BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit
epsilon [Candidatus Liberibacter asiaticus str. psy62]
         (245 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040495|gb|ACT57291.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 245

 Score =  504 bits (1297), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 245/245 (100%), Positives = 245/245 (100%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL
Sbjct: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP
Sbjct: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ
Sbjct: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY
Sbjct: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240

Query: 241 ISSNQ 245
           ISSNQ
Sbjct: 241 ISSNQ 245


>gi|315122041|ref|YP_004062530.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495443|gb|ADR52042.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 244

 Score =  420 bits (1080), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/242 (82%), Positives = 221/242 (91%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           KNKMRKI+FDIETTGLD KNDRIIEIGAVELLDYSKT RTFQVFL P+G+K +PEALKLH
Sbjct: 3   KNKMRKIIFDIETTGLDKKNDRIIEIGAVELLDYSKTGRTFQVFLSPDGKKVNPEALKLH 62

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITDEFL+DKP FS+IF EFWDFFN++NAEWIAHNAKFDVGFINAELQRINKDPLDPSRI
Sbjct: 63  GITDEFLRDKPFFSAIFPEFWDFFNDKNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 122

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL+DVY++MMVGGSQI+F
Sbjct: 123 VDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLADVYVQMMVGGSQIDF 182

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
           GFK NED  F +++    NIS LKR+KPL  RIT+EE+ EH KTIQ +GKN+IW+RY SS
Sbjct: 183 GFKANEDFLFGKDENIAQNISFLKREKPLSLRITEEEIAEHTKTIQMIGKNSIWNRYTSS 242

Query: 244 NQ 245
           NQ
Sbjct: 243 NQ 244


>gi|150398405|ref|YP_001328872.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419]
 gi|150029920|gb|ABR62037.1| DNA polymerase III, epsilon subunit [Sinorhizobium medicae WSM419]
          Length = 242

 Score =  248 bits (634), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 119/234 (50%), Positives = 160/234 (68%), Gaps = 4/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DR+IEIG +EL +   T RT  +++ P  RK  PEAL +HGIT
Sbjct: 1   MREIIFDTETTGLDNREDRVIEIGGIELENQFPTGRTIHIYINPGDRKVHPEALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+FLKDKPSF+ I  E  DFF   +A W+AHNA FD+GFINAE +R+   P+   R+IDT
Sbjct: 61  DDFLKDKPSFAEIAQEIVDFFG--DARWVAHNATFDMGFINAEFERLGLPPVGSDRVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRKHP   N L++LC+RYGI  SHR++HGALLDS LL++VYI+ M+GG Q   G  
Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTRHGALLDSELLAEVYIE-MIGGRQAALGLV 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             E      E    P I ++ R++PL  R+T+ E+  H   +  +G NAIW ++
Sbjct: 178 MTETGGRSLEADDGPVI-IVGRERPLRPRLTEAEIAAHAALVSKIGANAIWAKF 230


>gi|15963758|ref|NP_384111.1| DNA polymerase III subunit epsilon [Sinorhizobium meliloti 1021]
 gi|307302561|ref|ZP_07582318.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C]
 gi|307316108|ref|ZP_07595552.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83]
 gi|15072933|emb|CAC41392.1| Probable DNA polymerase III, epsilon chain [Sinorhizobium meliloti
           1021]
 gi|306897948|gb|EFN28690.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83]
 gi|306903231|gb|EFN33821.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C]
          Length = 242

 Score =  248 bits (634), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 117/236 (49%), Positives = 161/236 (68%), Gaps = 8/236 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DR+IEIG +EL +   T RT  +++ P  RK  PEAL +HGIT
Sbjct: 1   MREIIFDTETTGLDNREDRVIEIGGIELENQFPTGRTIHIYINPGERKVHPEALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDKP F+ +  E  DFF   +A W+AHNA FD+GFINAE +R+   P+   R+IDT
Sbjct: 61  DEFLKDKPPFADVAQEIVDFFG--DARWVAHNATFDIGFINAEFERLGLPPIGSDRVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LC+RYG+  SHR++HGALLDS LL++VYI+ M+GG Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCRRYGVDNSHRTRHGALLDSELLAEVYIE-MIGGRQAALGLV 177

Query: 187 TNE--DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             E  DR  + +   V    ++ R++PL  R+T+ E+  H   +  +G NAIW +Y
Sbjct: 178 VTEAGDRPIEADDGPV---VVVTRERPLRPRLTEAEIAAHAALVAKIGANAIWSKY 230


>gi|209551510|ref|YP_002283427.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537266|gb|ACI57201.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 245

 Score =  245 bits (626), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 120/244 (49%), Positives = 162/244 (66%), Gaps = 8/244 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T     +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNVIHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK  F+ +  E   FF   +A+WIAHNA FD+GFINAEL RI   P+ P R++DT
Sbjct: 61  DEFLKDKKPFAEVAEEILTFFG--DAKWIAHNATFDMGFINAELARIGLPPILPERVLDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+ M+GG Q  FG  
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIE-MIGGRQAAFGLS 177

Query: 187 TNE-----DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
                    R    E+  V   S+L+R +PL  R+++ E   H+  +  LG+  IW +Y 
Sbjct: 178 MTATSGQNGRGDATEEDDVVIASVLERPRPLAPRLSQSEAQAHEALVAKLGEKGIWAKYA 237

Query: 242 SSNQ 245
           S +Q
Sbjct: 238 SLDQ 241


>gi|227823864|ref|YP_002827837.1| DNA polymerase III subunit epsilon [Sinorhizobium fredii NGR234]
 gi|227342866|gb|ACP27084.1| DNA polymerase III, epsilon subunit [Sinorhizobium fredii NGR234]
          Length = 232

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/234 (50%), Positives = 159/234 (67%), Gaps = 4/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLDS+ DR+IEIG VEL +   T RT  +++ P  RK  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDSREDRVIEIGGVELENQFPTGRTIHIYINPGDRKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+FLKDKPSF+ +  E  DFF   +A W+AHNA FD+GFINAE  R+   P+   R+ DT
Sbjct: 61  DDFLKDKPSFADVVEEIVDFFG--DARWVAHNATFDIGFINAEFDRLGLPPVVIDRVTDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+ M+GG Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNSHRAKHGALLDSELLAEVYIE-MIGGRQAALGLV 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           T+E      +    P I +++R++ L  R+T+ E+  H   +  +G  AIW +Y
Sbjct: 178 TSEIGGLAVQADDGP-IIVMQRERLLAPRLTEAEIAAHAALVSKIGAKAIWMKY 230


>gi|86355674|ref|YP_467566.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42]
 gi|86279776|gb|ABC88839.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CFN 42]
          Length = 240

 Score =  242 bits (617), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 117/243 (48%), Positives = 162/243 (66%), Gaps = 8/243 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK  F+++  E   FF   + +WIAHNA FD+GFINAE  RI   P+ P ++IDT
Sbjct: 61  DEFLKDKKPFAAVADEILAFFG--DGKWIAHNATFDMGFINAEFARIGLPPILPDKVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+ M+GG Q  FG  
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIE-MIGGRQAAFGLS 177

Query: 187 TN-----EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
            +       R     +  +   + L+R +PL +R+++ E   H+  +  LG+  IW +Y 
Sbjct: 178 ISGQPGQAARGEMAMEDDMAFAAALERPRPLGSRLSRSEAQAHEALVAKLGEKGIWAKYA 237

Query: 242 SSN 244
           SSN
Sbjct: 238 SSN 240


>gi|222147020|ref|YP_002547977.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4]
 gi|221734010|gb|ACM34973.1| DNA polymerase III epsilon chain [Agrobacterium vitis S4]
          Length = 236

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 118/236 (50%), Positives = 162/236 (68%), Gaps = 6/236 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+SK DR+IEIG +EL ++  T R+F V++ P  R   P+AL +HGIT
Sbjct: 1   MREIVFDTETTGLESKLDRVIEIGGIELFNHFPTGRSFHVYINPADRAIHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            EFLKDKP F+ I  +   FF+   A+W+AHNA FD+GFINAE +R+ +  + P  +IDT
Sbjct: 61  PEFLKDKPVFADIVEDLVAFFD--GAKWVAHNATFDMGFINAEFERLGRPLVGPEHVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+M+ GG Q  FG +
Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEML-GGRQATFGLE 177

Query: 187 T--NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
              N D+  + +   V  + +  R K L +R+T+ E + H   ++ LG+ AIW  Y
Sbjct: 178 QSGNSDKRSRTQDSNV-TVEIAARPKTLASRLTEAEQERHAALVKRLGQKAIWAHY 232


>gi|325291458|ref|YP_004277322.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3]
 gi|325059311|gb|ADY63002.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3]
          Length = 233

 Score =  238 bits (607), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 117/235 (49%), Positives = 160/235 (68%), Gaps = 5/235 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGL+SK DR+IEIG +EL ++  T RT  +++ P  RK  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLESKLDRVIEIGGIELNNHFPTGRTLHIYINPEDRKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+FLKDKP F+ +  E  +FF  + A W+AHNA FD+GFINAE  R+   P+    + DT
Sbjct: 61  DDFLKDKPKFAEVVDEIREFF--EGARWVAHNATFDMGFINAEFARLGIAPVSSELVTDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+ M+GG Q   GF 
Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIE-MIGGRQTALGFG 177

Query: 187 T-NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           + ++ +    E   VP+   L+R  PL +R+  E +  H K +  +G  AIW+RY
Sbjct: 178 SGSKQQAVTIEDDDVPH-EPLQRPHPLPSRLDAETIAAHGKLVLGMGDKAIWNRY 231


>gi|218660611|ref|ZP_03516541.1| DNA polymerase III subunit epsilon [Rhizobium etli IE4771]
          Length = 238

 Score =  238 bits (606), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 113/241 (46%), Positives = 161/241 (66%), Gaps = 9/241 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK +F+ +  E   FF   +A+WIAHNA FD+GFINAE  RI   P+ P R++DT
Sbjct: 61  DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF- 185
           LS+ARRK+P   N L++LC+RYG+  SHR+KHGALLDS LL++VYI+ M+GG Q   G  
Sbjct: 119 LSMARRKNPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIE-MIGGRQAALGLG 177

Query: 186 ---KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
              +        E+   +  + +L+R +PL  R+++ E   H+  +  LG+  IW ++ S
Sbjct: 178 QSGQAAGGEMAMEDDGAI--LEVLERPRPLAPRLSQAEAQAHEALVAKLGEKGIWSKFAS 235

Query: 243 S 243
           S
Sbjct: 236 S 236


>gi|116249771|ref|YP_765609.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254419|emb|CAK05493.1| putative DNA polymerase subunit [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 240

 Score =  238 bits (606), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 117/239 (48%), Positives = 162/239 (67%), Gaps = 8/239 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +F+ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK  F+ +  +   FF   +A+WIAHNA FD+GFINAE  RI   P+ P R++DT
Sbjct: 61  DEFLKDKQPFAEVAEQILTFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVLDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF- 185
           LS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+ M+GG Q   G  
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIE-MIGGRQAALGLG 177

Query: 186 ---KTNE-DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
              K+N+  R     +  V   +LL+R +PL  R+++ E   H+  +  LG+ ++W +Y
Sbjct: 178 MVGKSNQAARGEMGMEDDVVIAALLERPRPLAPRLSQTEEQAHEALVAKLGEKSVWAKY 236


>gi|190889645|ref|YP_001976187.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652]
 gi|190694924|gb|ACE89009.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652]
          Length = 241

 Score =  237 bits (605), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 114/243 (46%), Positives = 159/243 (65%), Gaps = 12/243 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK +F+ +  E   FF   +A+WIAHNA FD+GFINAE  RI   P+ P R++DT
Sbjct: 61  DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF- 185
           LS+ARRKHP   N L++LC+RYG+  SHR+KHGALLDS LL++VYI+ M+GG Q   G  
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIE-MIGGRQAALGLG 177

Query: 186 ------KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                 +T       E+   +   ++L+R +PL  R+++ E   H   +  LG   IW +
Sbjct: 178 LSGQSGQTARGEMAMEDDGVIS--AVLERPRPLAPRLSQAEAQAHAALVSKLGDKGIWSK 235

Query: 240 YIS 242
           + S
Sbjct: 236 FAS 238


>gi|327191192|gb|EGE58235.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CNPAF512]
          Length = 241

 Score =  237 bits (605), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 114/243 (46%), Positives = 160/243 (65%), Gaps = 12/243 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK +F+ +  E   FF   +A+WIAHNA FD+GFINAE  RI   P+ P R++DT
Sbjct: 61  DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF- 185
           LS+ARRKHP   N L++LC+RYG+  SHR+KHGALLDS LL++VYI+ M+GG Q   G  
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIE-MIGGRQAALGLG 177

Query: 186 ------KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                 +T       E+   +   ++L+R +PL  R+++ E   H   +  LG+  IW +
Sbjct: 178 LSGQSGQTARGDMAMEDDGVIS--AVLERPRPLAPRLSQAEAQAHAALVSKLGEKGIWSK 235

Query: 240 YIS 242
           + S
Sbjct: 236 FAS 238


>gi|15887364|ref|NP_353045.1| DNA polymerase III subunit epsilon [Agrobacterium tumefaciens str.
           C58]
 gi|15154863|gb|AAK85830.1| DNA polymerase III, epsilon chain [Agrobacterium tumefaciens str.
           C58]
          Length = 232

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 114/237 (48%), Positives = 159/237 (67%), Gaps = 10/237 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGL+SK DR+IEIG +EL+++  T RT  +++ P  RK  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLESKLDRVIEIGGIELINHFPTGRTLHLYISPEDRKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDKP F+ +  +  +FF+   A W+AHNA FD+GFINAE  R+  +P+    + DT
Sbjct: 61  DEFLKDKPKFAEVIDQIREFFD--GARWVAHNATFDMGFINAEFARLGIEPVSAELVTDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRK+P   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+ M+GG Q   GF 
Sbjct: 119 LSLARRKNPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIE-MIGGRQTALGFG 177

Query: 187 T---NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           +    E    +E+    P    L+R   L +R+  + +  H K +  +G  AIW+RY
Sbjct: 178 SAARQETIIIEEDVPLAP----LQRPSALPSRLDADTIAAHGKLVLGMGDKAIWNRY 230


>gi|222084205|ref|YP_002542731.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
 gi|221721653|gb|ACM24809.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
          Length = 236

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 111/237 (46%), Positives = 157/237 (66%), Gaps = 6/237 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD+K DRIIEIG +EL ++  T +T  +++ P  RK  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNKADRIIEIGGIELFNHFPTGKTLHLYINPGDRKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE LKDKP F+ +  E   FF  + A+WIAHNA FD+GF+NAE  R+ + P+ P  +IDT
Sbjct: 61  DESLKDKPPFADVADEILAFF--EGAKWIAHNATFDMGFVNAEFNRLGRPPILPDMVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LC+RYGI  SHR++HGALLDS LL++VYI+ M+GG Q   G  
Sbjct: 119 LAMARRKHPMGPNSLDALCRRYGIDNSHRTRHGALLDSELLAEVYIE-MIGGRQTALGLG 177

Query: 187 TNEDRFFKEEKKTVPN---ISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           ++     +  +        + +L R +PL  R+++ E   H   +  LG+  IW +Y
Sbjct: 178 SSNGSSARSRQNNDVEEVVVEILARPQPLPGRVSETEEAAHAALVAKLGEKGIWSKY 234


>gi|241206948|ref|YP_002978044.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860838|gb|ACS58505.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 240

 Score =  234 bits (598), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 116/239 (48%), Positives = 161/239 (67%), Gaps = 8/239 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +F+ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK  F  +  +   FF   +A+WIAHNA FD+GFINAEL RI   P+ P R++DT
Sbjct: 61  DEFLKDKQPFGEVAEQILTFFG--DAKWIAHNATFDMGFINAELARIGLPPILPERVLDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF- 185
           LS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+ M+GG Q   G  
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIE-MIGGRQAALGLG 177

Query: 186 ---KTNE-DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
              ++N+  R     +  V   ++L+R +PL  R++  E   H+  +  LG+ ++W +Y
Sbjct: 178 MVGRSNQAARGDMGMEDDVVIAAVLERPRPLAPRVSDIEEQAHEALVAKLGEKSVWAKY 236


>gi|163757474|ref|ZP_02164563.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
 gi|162284976|gb|EDQ35258.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
          Length = 233

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 115/231 (49%), Positives = 156/231 (67%), Gaps = 4/231 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGLD+K DRIIEIG VEL +   T R+  +F+ P+GR   P+AL +HGIT
Sbjct: 1   MREIVFDTETTGLDNKVDRIIEIGCVELENQFPTGRSLHLFINPDGRAVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+FL DKP F+ +  E   FF+   A ++AHNA FD+GF+NAE  RI   P+DP  +IDT
Sbjct: 61  DQFLADKPVFADLADEIAAFFD--GAHYVAHNANFDMGFLNAEFDRIGLPPVDPGLVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARR+HP   N L++LC+RYGI  +HR+KHGALLD+ LL+DVYI+M  GG Q   G  
Sbjct: 119 LALARRRHPMGPNSLDALCRRYGIDNAHRTKHGALLDAELLTDVYIEMR-GGRQAALGLS 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           + E     EE ++V  I + +R   L  R+T  EL+ H   +  +G +A+W
Sbjct: 178 SAEAGNKTEESESV-VIEIGERPGKLPERLTAGELEAHSTLVNRIGADALW 227


>gi|239833112|ref|ZP_04681441.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG
           3301]
 gi|239825379|gb|EEQ96947.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG
           3301]
          Length = 233

 Score =  231 bits (588), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 112/236 (47%), Positives = 152/236 (64%), Gaps = 3/236 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  ++ P GR+   EAL +HGI+
Sbjct: 1   MREIVFDTETTGLERLEDRVIEIGGVELINKFPTGRTFHKYINPQGRQVHAEALAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E L DKP+F+ I  EF +FF+   A+ +AHNA FD+GFINAEL R+ +  +   R++DT
Sbjct: 61  NEQLLDKPTFAEILDEFLEFFD--GAKLVAHNAMFDLGFINAELARLGQAEIQVERVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LCKRYGI   HR+ HGALLDS +L++VYI+ ++GG Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIENGHRTLHGALLDSEILAEVYIE-LIGGKQTALGLS 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                       +   I L  R +PL  RI+ EE   H   +  LG  AIW +Y+S
Sbjct: 178 IGGTASGSNAGDSGAAIILAARPRPLAPRISDEERAAHAALVAGLGDKAIWKKYLS 233


>gi|153008185|ref|YP_001369400.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC
           49188]
 gi|151560073|gb|ABS13571.1| DNA polymerase III, epsilon subunit [Ochrobactrum anthropi ATCC
           49188]
          Length = 231

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 112/234 (47%), Positives = 151/234 (64%), Gaps = 3/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  ++ P GR+  PEAL +HGI+
Sbjct: 1   MREIVFDTETTGLERLEDRVIEIGGVELINKFPTGRTFHKYINPQGRQVHPEALAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E L DKP+F+ +  EF +FF+   A+ +AHNA FD+GFINAEL R+ +  +   RIIDT
Sbjct: 61  NEQLLDKPTFAEVLDEFLEFFD--GAKLVAHNAMFDLGFINAELARLGQAEIQSERIIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LCKRYGI   HR+ HGALLDS +L++VYI+ ++GG Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIENGHRTLHGALLDSEILAEVYIE-LIGGKQTALGLS 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
                      ++   I L  R +PL  RI+  E   H   +  LG  AIW +Y
Sbjct: 178 MGGAVSGNNAGESGAAIVLAARPRPLAPRISDAERAAHAALVDKLGDKAIWKKY 231


>gi|114706065|ref|ZP_01438968.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506]
 gi|114538911|gb|EAU42032.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506]
          Length = 242

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 111/235 (47%), Positives = 158/235 (67%), Gaps = 4/235 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGLD+  DR+IEIG VEL ++  T +T+  ++ P GRK  P A  +HGI+
Sbjct: 1   MREIVFDTETTGLDNTIDRVIEIGGVELWNHIPTGKTYHQYIRPAGRKVDPAAFDVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFL DKP F  I  EF  FF+  +A+ IAHNA FD+GF+NAELQR+   P++PS +IDT
Sbjct: 61  DEFLLDKPLFEEIADEFVAFFS--DAKLIAHNANFDIGFLNAELQRLRHPPIEPSLVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRK P +   L++LC R+ +  S R KHGALLDS LL+DVYI+ ++GG Q + G  
Sbjct: 119 LAMARRKFPMAPASLDALCSRFAVDTSKREKHGALLDSELLADVYIE-LIGGRQSSLGLI 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
              D  +   +   P +++  R+ PL  R++++E   H   +++LG  A+W RY+
Sbjct: 178 VEADETYASGEAGGP-VAVSAREAPLAPRLSEDEASRHLAFVESLGDEALWWRYL 231


>gi|110635810|ref|YP_676018.1| DNA polymerase III subunit epsilon [Mesorhizobium sp. BNC1]
 gi|110286794|gb|ABG64853.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1]
          Length = 242

 Score =  224 bits (572), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 112/237 (47%), Positives = 160/237 (67%), Gaps = 4/237 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD + DR+IE+G VEL +   T RT   F+ P GR   P+A  +HGI+
Sbjct: 1   MREIIFDTETTGLDPREDRVIELGCVELANRFPTGRTLHYFINPQGRSVHPDAQAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  L  KP F+ I  EF +F +   A+ +AHNA FD+GFINAE QR+ +  +DP+R+IDT
Sbjct: 61  DADLAGKPVFAEILDEFLEFID--GAKLVAHNANFDIGFINAEFQRVGQPYIDPARVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L+IARRKHP   N L++LC+RYGI  SHR+KHGALLD+ LL++VYI+ + GG Q +FG +
Sbjct: 119 LAIARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDAELLAEVYIE-LAGGKQASFGLE 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
                  +E   +V  ++L  R +PL +R+T EE   H+  +  +G+NA+W + + +
Sbjct: 178 IATQGVAEETSSSV-IVALPPRPRPLRSRLTPEEQQAHEALVAGIGENALWRKLMPA 233


>gi|225626451|ref|ZP_03784490.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo]
 gi|225618108|gb|EEH15151.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo]
          Length = 248

 Score =  224 bits (572), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 110/242 (45%), Positives = 156/242 (64%), Gaps = 6/242 (2%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R + MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +
Sbjct: 11  RGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI++E L DKP F+ I  EF +F +   A  +AHNA FD+GFINAEL R+++  +    
Sbjct: 71  HGISNEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEH 128

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+ ++GG Q  
Sbjct: 129 IVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIE-LIGGKQTA 187

Query: 183 FGFKTNEDRFFKEEK--KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            G          + +   + P + L  R +PL  RI+  E   H   ++ +G  A+W +Y
Sbjct: 188 LGLTMESGSAGGDSRGNGSAP-VVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKY 246

Query: 241 IS 242
           +S
Sbjct: 247 LS 248


>gi|237816422|ref|ZP_04595415.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A]
 gi|237788489|gb|EEP62704.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A]
          Length = 248

 Score =  224 bits (571), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 110/242 (45%), Positives = 156/242 (64%), Gaps = 6/242 (2%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R + MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +
Sbjct: 11  RGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI++E L DKP F+ I  EF +F +   A  +AHNA FD+GFINAEL R+++  +    
Sbjct: 71  HGISNEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEH 128

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+ ++GG Q  
Sbjct: 129 IVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIE-LIGGKQTA 187

Query: 183 FGFKTNEDRFFKEEK--KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            G          + +   + P + L  R +PL  RI+  E   H   ++ +G  A+W +Y
Sbjct: 188 LGLTMESGSAGGDSRGNGSAP-VVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKY 246

Query: 241 IS 242
           +S
Sbjct: 247 LS 248


>gi|17988339|ref|NP_540973.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           16M]
 gi|17984115|gb|AAL53237.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str.
           16M]
          Length = 248

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/242 (45%), Positives = 156/242 (64%), Gaps = 6/242 (2%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R + MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +
Sbjct: 11  RGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI++E L DKP F+ I  EF +F +   A  +AHNA FD+GFINAEL R+++  +    
Sbjct: 71  HGISNEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEH 128

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+ ++GG Q  
Sbjct: 129 IVDTLALARRKHPIGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIE-LIGGKQTA 187

Query: 183 FGFKTNEDRFFKEEK--KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            G          + +   + P + L  R +PL  RI+  E   H   ++ +G  A+W +Y
Sbjct: 188 LGLTMESGSAGGDSRGNGSAP-VVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKY 246

Query: 241 IS 242
           +S
Sbjct: 247 LS 248


>gi|256370469|ref|YP_003107980.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
 gi|256000632|gb|ACU49031.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
          Length = 234

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 109/238 (45%), Positives = 154/238 (64%), Gaps = 6/238 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +HGI+
Sbjct: 1   MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E L DKP F+ I  EF +F +   A  +AHNA FD+GFINAEL R+++  +    I+DT
Sbjct: 61  NEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEHIVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+ ++GG Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIENSHRTLHGALLDAQILAEVYIE-LIGGKQTALGLT 177

Query: 187 TNEDRFFKEEK--KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                   + +   + P + L  R +PL  RI+  E   H   ++ +G  A+W +Y+S
Sbjct: 178 MESGSAGGDSRGNGSAP-VVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234


>gi|254718114|ref|ZP_05179925.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|265983066|ref|ZP_06095801.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|306839740|ref|ZP_07472542.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653]
 gi|306842813|ref|ZP_07475453.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2]
 gi|306843489|ref|ZP_07476090.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1]
 gi|264661658|gb|EEZ31919.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|306276180|gb|EFM57880.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1]
 gi|306287007|gb|EFM58518.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2]
 gi|306405200|gb|EFM61477.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653]
          Length = 234

 Score =  222 bits (566), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 109/238 (45%), Positives = 154/238 (64%), Gaps = 6/238 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +HGI+
Sbjct: 1   MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E L DKP F+ I  EF +F +   A  +AHNA FD+GFINAEL R+++  +    I+DT
Sbjct: 61  NEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEIASEHIVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+ ++GG Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIE-LIGGKQTALGLT 177

Query: 187 TNEDRFFKEEK--KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                   + +   + P + L  R +PL  RI+  E   H   ++ +G  A+W +Y+S
Sbjct: 178 MESGSAGGDSRGNGSAP-VVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234


>gi|23502919|ref|NP_699046.1| DNA polymerase III subunit epsilon [Brucella suis 1330]
 gi|62290915|ref|YP_222708.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str.
           9-941]
 gi|82700826|ref|YP_415400.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar
           Abortus 2308]
 gi|148559666|ref|YP_001259876.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840]
 gi|161619985|ref|YP_001593872.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365]
 gi|163844089|ref|YP_001628493.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445]
 gi|189025128|ref|YP_001935896.1| DNA polymerase III subunit epsilon [Brucella abortus S19]
 gi|254690204|ref|ZP_05153458.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|254694694|ref|ZP_05156522.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|254696321|ref|ZP_05158149.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700703|ref|ZP_05162531.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|254705074|ref|ZP_05166902.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|254709049|ref|ZP_05170860.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|254713525|ref|ZP_05175336.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|254716120|ref|ZP_05177931.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|254731237|ref|ZP_05189815.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|256030574|ref|ZP_05444188.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|256060036|ref|ZP_05450218.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|256158570|ref|ZP_05456460.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|256253981|ref|ZP_05459517.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|256258458|ref|ZP_05463994.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260169479|ref|ZP_05756290.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99]
 gi|260546177|ref|ZP_05821917.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260567458|ref|ZP_05837928.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|260755744|ref|ZP_05868092.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|260758968|ref|ZP_05871316.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|260760692|ref|ZP_05873035.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884770|ref|ZP_05896384.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|261215021|ref|ZP_05929302.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|261217890|ref|ZP_05932171.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261221121|ref|ZP_05935402.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|261316547|ref|ZP_05955744.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|261321260|ref|ZP_05960457.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|261324012|ref|ZP_05963209.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261751212|ref|ZP_05994921.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261755776|ref|ZP_05999485.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|261759005|ref|ZP_06002714.1| DNA polymerase III [Brucella sp. F5/99]
 gi|265987621|ref|ZP_06100178.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|265997081|ref|ZP_06109638.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|294851300|ref|ZP_06791973.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
 gi|297247299|ref|ZP_06931017.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str.
           B3196]
 gi|23348951|gb|AAN30961.1| DNA polymerase III, epsilon subunit [Brucella suis 1330]
 gi|62197047|gb|AAX75347.1| DnaQ, DNA polymerase III, epsilon subunit [Brucella abortus bv. 1
           str. 9-941]
 gi|82616927|emb|CAJ12028.1| Beta tubulin:DNA polymerase III, epsilon subunit:Exonuclease:DNA
           polymerase 3, epsilon subunit [Brucella melitensis
           biovar Abortus 2308]
 gi|148370923|gb|ABQ60902.1| DNA polymerase III, epsilon subunit [Brucella ovis ATCC 25840]
 gi|161336796|gb|ABX63101.1| DNA polymerase III, epsilon subunit [Brucella canis ATCC 23365]
 gi|163674812|gb|ABY38923.1| DNA polymerase III, epsilon subunit [Brucella suis ATCC 23445]
 gi|189020700|gb|ACD73422.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|260096284|gb|EEW80160.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260156976|gb|EEW92056.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|260669286|gb|EEX56226.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|260671124|gb|EEX57945.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675852|gb|EEX62673.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|260874298|gb|EEX81367.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260916628|gb|EEX83489.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|260919705|gb|EEX86358.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|260922979|gb|EEX89547.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261293950|gb|EEX97446.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|261295770|gb|EEX99266.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|261299992|gb|EEY03489.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261738989|gb|EEY26985.1| DNA polymerase III [Brucella sp. F5/99]
 gi|261740965|gb|EEY28891.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261745529|gb|EEY33455.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|262551549|gb|EEZ07539.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|264659818|gb|EEZ30079.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|294819889|gb|EFG36888.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
 gi|297174468|gb|EFH33815.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str.
           B3196]
          Length = 234

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 109/238 (45%), Positives = 154/238 (64%), Gaps = 6/238 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +HGI+
Sbjct: 1   MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E L DKP F+ I  EF +F +   A  +AHNA FD+GFINAEL R+++  +    I+DT
Sbjct: 61  NEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEHIVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+ ++GG Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIE-LIGGKQTALGLT 177

Query: 187 TNEDRFFKEEK--KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                   + +   + P + L  R +PL  RI+  E   H   ++ +G  A+W +Y+S
Sbjct: 178 MESGSAGGDSRGNGSAP-VVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234


>gi|225853502|ref|YP_002733735.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457]
 gi|256045675|ref|ZP_05448553.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256263016|ref|ZP_05465548.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|260562976|ref|ZP_05833462.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|265992096|ref|ZP_06104653.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|225641867|gb|ACO01781.1| DNA polymerase III, epsilon subunit [Brucella melitensis ATCC
           23457]
 gi|260152992|gb|EEW88084.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|263003162|gb|EEZ15455.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092889|gb|EEZ17064.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|326410068|gb|ADZ67133.1| DNA polymerase III subunit epsilon [Brucella melitensis M28]
 gi|326539784|gb|ADZ87999.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90]
          Length = 234

 Score =  221 bits (564), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 109/238 (45%), Positives = 154/238 (64%), Gaps = 6/238 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +HGI+
Sbjct: 1   MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E L DKP F+ I  EF +F +   A  +AHNA FD+GFINAEL R+++  +    I+DT
Sbjct: 61  NEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEHIVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+ ++GG Q   G  
Sbjct: 119 LALARRKHPIGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIE-LIGGKQTALGLT 177

Query: 187 TNEDRFFKEEK--KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                   + +   + P + L  R +PL  RI+  E   H   ++ +G  A+W +Y+S
Sbjct: 178 MESGSAGGDSRGNGSAP-VVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234


>gi|90420992|ref|ZP_01228896.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334770|gb|EAS48546.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 239

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 113/235 (48%), Positives = 155/235 (65%), Gaps = 6/235 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGLD   +R+IEIG VEL ++  T + +  F+ P GRK  P A  +HGI+
Sbjct: 1   MREIVFDTETTGLDPDVERVIEIGGVELWNHIPTGKNYHAFIRPAGRKVDPAAFDVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+FL DKP FS I  EF +FF+   A+ IAHNA FDV F+NAEL+RI++ P+DPS +IDT
Sbjct: 61  DDFLADKPLFSEIADEFLEFFS--GAKLIAHNAAFDVRFLNAELKRIDQPPIDPSVVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +ARRK P +   L++LC R+ +  S R KHGALLDS LL++VYI+ ++GG Q   G  
Sbjct: 119 LPMARRKFPMAPATLDALCSRFSVDTSRRDKHGALLDSELLAEVYIE-LIGGRQAALGLA 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
             ED   ++    V  I+   R  PL +R++++E+  H   + TLG  AIW  Y+
Sbjct: 178 VEEDA-HEDADGNVWRIA--PRPVPLPSRLSQDEIVRHRAFVSTLGDEAIWWNYL 229


>gi|218513681|ref|ZP_03510521.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3]
          Length = 229

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 132/179 (73%), Gaps = 3/179 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK +F+ +  E   FF   +A+WIAHNA FD+GFINAE  RI   P+ P R++DT
Sbjct: 61  DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           LS+ARRKHP   N L++LC+RYG+  SHR+KHGALLDS LL++VYI+ M+GG Q   G 
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIE-MIGGRQAALGL 176


>gi|13473785|ref|NP_105353.1| DNA polymerase III subunit epsilon [Mesorhizobium loti MAFF303099]
 gi|14024536|dbj|BAB51139.1| DNA polymerase III epsilon chain [Mesorhizobium loti MAFF303099]
          Length = 240

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/239 (43%), Positives = 153/239 (64%), Gaps = 4/239 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLDS++DR+IE+G VEL++   T RTF  ++ P GR    EA  +HGI+
Sbjct: 1   MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHEEAQAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L  KP+F+ I  E+  F +   A+ +AHNA FD+GF+N E  R+    +DP R++DT
Sbjct: 61  AADLAGKPTFAEIAEEWLTFTD--GAKLVAHNATFDIGFLNVEFGRLGHPVVDPGRVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LC+RYGI  + R+KHGALLDS LL++VYI+ ++GG Q      
Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNTKRTKHGALLDSELLAEVYIE-LIGGKQAALILD 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245
           +       E  + +  I + +R +PL  R+T+ E   H   + TLG+ A+W +  SS +
Sbjct: 178 SATAPAQGENVRHI-EIIVAERPRPLLPRLTEAERAAHAAMVATLGEKALWLKANSSEK 235


>gi|323135821|ref|ZP_08070904.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242]
 gi|322398912|gb|EFY01431.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242]
          Length = 239

 Score =  208 bits (529), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 110/238 (46%), Positives = 149/238 (62%), Gaps = 10/238 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD SK DR++EIGAVE+L+   T R F  ++ P  R    EA ++HG+
Sbjct: 1   MREIVFDTETTGLDPSKGDRVVEIGAVEILNLIPTGRVFHAYIDPE-RDMPEEAFRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL     F  I  EF DF   +++  +AHNA+FDV FINAE   +N  PL P+RI+D
Sbjct: 60  SREFLSQHRKFREIAEEFIDFI--EDSPMVAHNAEFDVRFINAEFSMLNFAPLAPARIVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IARR HP S   L++LC+RYGI +S R KHGALLD+ LL++VY ++M GG Q     
Sbjct: 118 TLAIARRLHPGSPASLDALCQRYGIDLSRRDKHGALLDAGLLAEVYAELM-GGRQAALSL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
           +T         ++   +  L  R  PL  R+T  E + H   +  L K+AIWDRY++ 
Sbjct: 177 QT-----VSVSRRAQTSDLLRARPAPLEDRLTPAEDEAHRAFVAGLSKSAIWDRYLTG 229


>gi|260467189|ref|ZP_05813366.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259029042|gb|EEW30341.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 241

 Score =  207 bits (528), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 103/237 (43%), Positives = 147/237 (62%), Gaps = 3/237 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLDS++DR+IE+G VEL++   T RTF  ++ P GR    EA  +HGI+
Sbjct: 1   MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHAEAQAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L  KP+F+ I  E+  F +   A+ +AHNA FD+GF+N E  R+    +DP  ++DT
Sbjct: 61  AADLAGKPTFAEIVEEWLAFTD--GAKLVAHNATFDIGFLNVEFGRLGHPVIDPGLVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LC+RYGI  + R+KHGALLDS LL++VYI+ ++GG Q      
Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNAKRTKHGALLDSELLAEVYIE-LIGGKQAALILD 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
           +      + E      I    R  PL  R+T+ E   H   + TLG+ A+W +  SS
Sbjct: 178 SATAPAQRGENVRHIEIIAAVRPGPLLPRLTEAERAAHAAMVATLGEKALWLKATSS 234


>gi|240849687|ref|YP_002971075.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup]
 gi|240266810|gb|ACS50398.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup]
          Length = 235

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 109/236 (46%), Positives = 154/236 (65%), Gaps = 7/236 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD + DRIIEIG VE++D   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGRQFHVYLNPEGVIIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LK++ SFS I  EF +F   + A  IAHNA FD+GFINAEL+R+NK  +    I+DT
Sbjct: 61  NERLKNEKSFSDIVDEFLEFI--KGATMIAHNASFDIGFINAELKRVNKPLISVDNILDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFG 184
           L++ARRK P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+ ++GG Q  + FG
Sbjct: 119 LAMARRKFPMGPNSLDILCKRFGIDNSHRVLHGALLDAEILADVYIE-LIGGKQGVLGFG 177

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            +   D   + +K T   + +  R + L +R++ +E   H   I T+G+ A+W+ +
Sbjct: 178 NRRGVDEHIQNDKDTSYAVKI--RPQALPSRLSMQEKRLHADFINTMGEKALWNNF 231


>gi|220921281|ref|YP_002496582.1| DNA polymerase III subunit epsilon [Methylobacterium nodulans ORS
           2060]
 gi|219945887|gb|ACL56279.1| DNA polymerase III, epsilon subunit [Methylobacterium nodulans ORS
           2060]
          Length = 238

 Score =  202 bits (513), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 100/239 (41%), Positives = 150/239 (62%), Gaps = 10/239 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +R+IV D ETTG D+K DR+IEIG +ELL++  T R F  ++ P  R  S  A  +HG++
Sbjct: 2   LREIVLDTETTGTDAKTDRLIEIGGIELLNHIPTGREFHRYINPQ-RAVSQGAFAVHGLS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSRI 123
           D FL DKP F+ I  +F DF    +A ++ HNA FDVGF+NAE  R+ +    P++ S +
Sbjct: 61  DAFLADKPLFAEILPDFLDFCG--DATFVIHNAAFDVGFLNAEYARLGETAPPPIELSAV 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL++ARRKHP++ N+L++LC RYGI  S R+KHGALLD+ +L++VYI+++ GG Q + 
Sbjct: 119 VDTLALARRKHPNAANNLDALCARYGIDNSRRTKHGALLDAQILAEVYIELL-GGKQTSL 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           G         +  ++  P   +    + + +R+T  E   H     +LG NA+W  YI 
Sbjct: 178 GLTLEAASIVRVTQEAGP---VAHGPRSVRSRLTDAERTAHAAFTASLGANAVWRDYIG 233


>gi|49473693|ref|YP_031735.1| DNA polymerase III epsilon chain [Bartonella quintana str.
           Toulouse]
 gi|49239196|emb|CAF25512.1| DNA polymerase III epsilon chain [Bartonella quintana str.
           Toulouse]
          Length = 235

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 104/234 (44%), Positives = 152/234 (64%), Gaps = 3/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD + DRIIEIG VE++D   T + F V+L P G   S EA+ +HG+T
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIGCVEMIDRYLTGKRFHVYLNPQGVVISDEAVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LK++ SFS I  E  +F +   A  +AHNA FD+GF+NAEL R+NK  +    I+DT
Sbjct: 61  NERLKNEKSFSDIADELLEFIS--GATMVAHNASFDIGFLNAELGRVNKPLISVDNILDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRK P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+ ++GG Q   GF+
Sbjct: 119 LAMARRKFPMGPNSLDVLCKRFGIDNSHRVFHGALLDAEILADVYIE-LIGGKQGVLGFE 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            ++      +      +++  R +PL  R++ +E   H   I+ +G+ A+W+ +
Sbjct: 178 NSKSVEQDSQNDKNALLAVKVRPQPLSPRLSAQEKIMHADFIKKIGEKALWNFF 231


>gi|319404918|emb|CBI78518.1| DNA polymerase III epsilon chain [Bartonella sp. AR 15-3]
          Length = 235

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/236 (44%), Positives = 152/236 (64%), Gaps = 6/236 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGL+ ++DRIIEIG +E+++   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNPQGVVIPDEVIAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LKD+ +F  I     DF +  NA  +AHNA FD+GF+NAEL R+NK  +    +IDT
Sbjct: 61  NEHLKDEKNFEDIVDALLDFID--NATIVAHNANFDIGFLNAELGRVNKPLVSSDNVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LSIARR+ P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+ ++GG Q  F F 
Sbjct: 119 LSIARRRFPMGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIE-LIGGKQGIFSFD 177

Query: 187 TNE--DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             E  D    ++ K V   ++  R + L  R++K+E + H   I+ +G  A+W+R+
Sbjct: 178 NYENFDVMNVQDSKNVF-YTVKMRSQALPQRLSKQEKNMHANLIKKIGDKALWNRF 232


>gi|121602632|ref|YP_988343.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis
           KC583]
 gi|120614809|gb|ABM45410.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis
           KC583]
          Length = 234

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 106/236 (44%), Positives = 149/236 (63%), Gaps = 7/236 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD  NDRIIEIG VE++D   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLDKDNDRIIEIGCVEMVDRYLTGRQFHVYLNPQGVIIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LK +  F  I  E  +F +   A  IAHNA FD+ F+NAEL+R+NK  +    +IDT
Sbjct: 61  NERLKGEKKFDDIADELLEFID--GAMMIAHNANFDISFLNAELKRVNKPLISIDNVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRK P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+ ++GG Q   GF 
Sbjct: 119 LAMARRKFPMGPNSLDVLCKRFGIDNSHRILHGALLDAEILADVYIE-LIGGKQGTLGFY 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            +  R    E  +  NIS + + +P  L  R++++E   H   +  +GK A+W+++
Sbjct: 178 NSNGRHLNTENGS--NISYVFKIRPQALPPRLSEQEKSMHADLVNQIGKKALWNQF 231


>gi|163867311|ref|YP_001608505.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476]
 gi|161016952|emb|CAK00510.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476]
          Length = 235

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 109/236 (46%), Positives = 149/236 (63%), Gaps = 7/236 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD + DRIIEIG VE++D   T   F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGCQFHVYLNPEGVIIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LK++ SFS I  EF +F N   A  IAHNA FD+GFINAEL+R+NK  +    IIDT
Sbjct: 61  NERLKNEKSFSDIVDEFLEFIN--GATMIAHNASFDIGFINAELKRVNKPLISVDNIIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF- 185
           L++ARRK P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+ ++GG Q   GF 
Sbjct: 119 LAMARRKFPMGPNSLDILCKRFGIDNSHRVLHGALLDAEILADVYIE-LIGGKQGVLGFD 177

Query: 186 -KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            K N D   + +      +    R + L +R++ +E   H   I  +G+ A+W+ +
Sbjct: 178 NKRNLDEHIQNDTDMSYAVKF--RPQALPSRLSAQEKKLHADFINKMGEKALWNTF 231


>gi|319406407|emb|CBI80047.1| DNA polymerase III epsilon chain [Bartonella sp. 1-1C]
          Length = 235

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/237 (44%), Positives = 150/237 (63%), Gaps = 8/237 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGL+ ++DRIIEIG +E+++   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLNKESDRIIEIGCIEMVNRYLTGRRFHVYLNPQGVVIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LKD+  F  I     DF +   A  +AHNA FD+GF+NAEL+R+NK  ++   +IDT
Sbjct: 61  NERLKDEKKFDDIVDALLDFID--GATIVAHNANFDIGFLNAELERVNKPLINSDNVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LSIARR+ P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+ ++GG Q  F F 
Sbjct: 119 LSIARRRFPMGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIE-LIGGKQGIFSFD 177

Query: 187 TNED---RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             E       ++ K   P I +  R + L  R++K+E D H   I+ +G  A+W+ +
Sbjct: 178 NYESCDVMNVQDNKNAFPTIKI--RSQALPQRLSKQEKDMHIDLIKKIGDKALWNHF 232


>gi|319898197|ref|YP_004158290.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73]
 gi|319402161|emb|CBI75687.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73]
          Length = 235

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/236 (44%), Positives = 153/236 (64%), Gaps = 6/236 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGL+ ++DRIIEIG +E+++   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNPQGVVIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LKD+  F  I     DF +   A  +AHNA FD+GF+NAEL+R+NK  +  + +IDT
Sbjct: 61  NERLKDEKKFDDIVDALLDFID--GATIVAHNANFDIGFLNAELERVNKPLVSINHVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L+IARR+ P+  N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+ ++GG Q  FGF 
Sbjct: 119 LAIARRRFPTGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIE-LIGGKQGIFGFD 177

Query: 187 TNE--DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             E  D    ++ K   + + + R  PL  R++K+E D H   I+ +G  A+W+ +
Sbjct: 178 NCEDFDVMSVQDGKNAFHTTKI-RFHPLPQRLSKQEKDMHANLIKKIGDKALWNHF 232


>gi|304392717|ref|ZP_07374657.1| DNA polymerase III, epsilon subunit [Ahrensia sp. R2A130]
 gi|303295347|gb|EFL89707.1| DNA polymerase III, epsilon subunit [Ahrensia sp. R2A130]
          Length = 249

 Score =  199 bits (505), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 99/240 (41%), Positives = 151/240 (62%), Gaps = 8/240 (3%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M  I+FD ETTGL +K+ DR+IEIGAVE+ D   T RTF  ++ P  R+  P+AL++HGI
Sbjct: 1   MHAIIFDTETTGLSAKDGDRVIEIGAVEMKDLIPTGRTFHQYIHPGDREIHPDALRVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E L D+P F ++   F DF    +A  +AHNA FD+GF+NAE  R+N  P DP  ++D
Sbjct: 61  TMERLADEPRFEAVGQSFIDFCG--DAMLVAHNAPFDIGFLNAEYARMNLPPCDPELVLD 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+  AR+K P +R  L+ LC R+ I+ ++R  HGALLD+ LL++V+I++M GG+Q+  GF
Sbjct: 119 TVQAARKKFPGARVSLDMLCDRFNISRANRVLHGALLDARLLAEVFIELM-GGAQVKMGF 177

Query: 186 ----KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
               +T+  R     ++   +    +R   +   +T EE + H+     +GK A+W++Y+
Sbjct: 178 DDEAETDAQRADPRNRRQTQHPPQPQRPSAMVYELTPEERERHNAMRAKIGKGALWNQYL 237


>gi|328541691|ref|YP_004301800.1| DNA polymerase III, epsilon subunit [polymorphum gilvum
           SL003B-26A1]
 gi|326411443|gb|ADZ68506.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 240

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 103/242 (42%), Positives = 150/242 (61%), Gaps = 13/242 (5%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHG 64
           MR+I FD ETTGLD +N DR++EIG VEL ++  T  T+ V++ P   ++ PEA   +HG
Sbjct: 1   MREIAFDTETTGLDPRNGDRLVEIGGVELFNHVPTGNTYHVYINPE--RDMPEAAFNVHG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ++ EFL DKP F+ I  EF  F    +A  + HNA FD+GFIN EL R  + P+  ++++
Sbjct: 59  LSAEFLADKPVFAEIVDEFLAFVG--DARLVIHNAAFDMGFINMELSRAGRLPIPRTQVL 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +ARRKHP   N L++LC RYGI  S R++HGALLDS LL++VY++ ++GG Q   G
Sbjct: 117 DTLELARRKHPMGPNSLDALCGRYGIDNSRRTRHGALLDSELLAEVYLE-LIGGRQTALG 175

Query: 185 FKTNED----RFFKEEKKTVPNI--SLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
               E+     +  + + + P    S   R  PL + +T+EE   H   +  +G+ AIW 
Sbjct: 176 LVLQEEVSGRSYGGQSEGSGPAQVRSAPPRPVPLASWLTEEEKAAHATFVAGMGETAIWS 235

Query: 239 RY 240
           +Y
Sbjct: 236 KY 237


>gi|170739343|ref|YP_001767998.1| DNA polymerase III subunit epsilon [Methylobacterium sp. 4-46]
 gi|168193617|gb|ACA15564.1| DNA polymerase III, epsilon subunit [Methylobacterium sp. 4-46]
          Length = 238

 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 99/241 (41%), Positives = 148/241 (61%), Gaps = 10/241 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +R+IV D ETTG D+K DR++EIG +ELL++  T R F  ++ P  R  S  AL +HG+ 
Sbjct: 2   LREIVLDTETTGTDAKTDRLVEIGGIELLNHIPTGREFHRYINPQ-RPVSQGALAVHGLA 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSRI 123
           D FL DKP F++I   F DF  +  A ++ HNA FDVGF+NAE  R+       +D + +
Sbjct: 61  DAFLADKPPFAAILPAFLDFCGD--ATFVIHNAAFDVGFLNAEYARLGDAAPPAIDLAGV 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL++ARRKHP++ N+L++LC RYGI  S R+KHGALLD+ +L++VYI+++ GG Q + 
Sbjct: 119 VDTLALARRKHPNAANNLDALCARYGIDNSRRTKHGALLDAQILAEVYIELL-GGKQTSL 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
           G   +     +      P   +    + + +R+T+ E + H      LG  AIW  YI  
Sbjct: 178 GLTLDVASTVRVATLGGPAAHV---PRAVRSRLTQAEREAHAAFTAGLGGGAIWRDYIGE 234

Query: 244 N 244
           +
Sbjct: 235 D 235


>gi|296444995|ref|ZP_06886956.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium
           OB3b]
 gi|296257416|gb|EFH04482.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium
           OB3b]
          Length = 242

 Score =  197 bits (502), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 147/237 (62%), Gaps = 9/237 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD +K  RI+EIGAVE+ +   T RTF  +L P  R    EA ++HG+
Sbjct: 1   MREIVFDTETTGLDPAKGHRIVEIGAVEISNLIPTGRTFHFYLDPE-RDMPEEAFRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  FL  +  F  I   F +F    +A+ +AHNA+FD+ F+NAEL  +  + +   R++D
Sbjct: 60  STAFLTGQKKFREIAEAFLEFV--ADAQLVAHNAEFDMRFVNAELAMLGLEAIAADRVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IARR HP + N L++LC+RYG+  S R KHGALLDS+LL++VY ++M GG Q     
Sbjct: 118 TLTIARRLHPGAANSLDALCQRYGVDSSRRDKHGALLDSYLLAEVYAELM-GGRQSALVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           +T+         + +    L  R  PL  R+ +EE+  H++   TLGK  IW RY++
Sbjct: 177 QTS----VAAAAQDLGADLLRSRPAPLAPRLAEEEIAAHERFAATLGKAPIWSRYLT 229


>gi|198282704|ref|YP_002219025.1| DNA polymerase III subunit epsilon [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665705|ref|YP_002424896.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198247225|gb|ACH82818.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517918|gb|ACK78504.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 248

 Score =  197 bits (502), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 105/241 (43%), Positives = 152/241 (63%), Gaps = 13/241 (5%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R++V D ETTG+D K   R+IEIGAVEL+D   T   +Q +L P  R + PEAL++HG+
Sbjct: 3   VRQVVLDTETTGIDWKQGHRVIEIGAVELIDRRVTEAYYQQYLNPQ-RSSDPEALRIHGL 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDEFL+D+P F+ +   F +F    +AE I HNA FD+GF+N ELQ   K PL  + ++D
Sbjct: 62  TDEFLQDQPGFAEVADAFLEFLG--DAELIIHNAPFDLGFLNHELQLAGKAPLRQA-VMD 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM------MVGGS 179
           TL+ ARR+HP  +NDLNSLC+RY +  SHR  HGALLD+ +L++VY+ M      M+G  
Sbjct: 119 TLADARRRHPGQKNDLNSLCRRYSVENSHRELHGALLDTRILAEVYLAMTGGQVDMMGML 178

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDK-PL-FTRITKEELDEHDKTIQTLGKNAIW 237
               G    E R   +++++    + L R + PL   R + EE   H + +Q +G NA+W
Sbjct: 179 GAAGGSAATEMRSAGDDRRSEGIPAALSRPRGPLRVIRASAEECMLHRQYLQNMGGNALW 238

Query: 238 D 238
           +
Sbjct: 239 E 239


>gi|298293766|ref|YP_003695705.1| DNA polymerase III subunit epsilon [Starkeya novella DSM 506]
 gi|296930277|gb|ADH91086.1| DNA polymerase III, epsilon subunit [Starkeya novella DSM 506]
          Length = 232

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/238 (42%), Positives = 144/238 (60%), Gaps = 8/238 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+    DR++EIG VE+ +   T +TF V+L P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLNPLTGDRLVEIGCVEIFNRIPTGQTFHVYLNPE-RDMPLEAFNVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+++  +F  F        + HNA FD+GFINAEL R+ +  L   R++D
Sbjct: 60  SAEFLSDKPLFAAVVDDFLAFI--AGDPLVIHNAAFDIGFINAELARLARPALTFDRVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TLS+ARR+HP + N L+ L  RYGI  S R+KHGALLDS LL+DVY + + GG Q   G 
Sbjct: 118 TLSLARRRHPGASNRLDDLMNRYGIDGSRRTKHGALLDSELLADVYAE-LCGGRQTALGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
              E      E+++    + L+R +PL  R+   ++  H+  + TLG +AIW  Y + 
Sbjct: 177 TVVETTVVLAERQSA---APLQRPRPLAPRLDAAQVATHEAFVATLGDSAIWKDYAAG 231


>gi|182680101|ref|YP_001834247.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635984|gb|ACB96758.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 236

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 104/237 (43%), Positives = 151/237 (63%), Gaps = 11/237 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64
           MR+IV D ETTGLD ++  RIIEIG +E+L    T + F V++ P  +++ PE A+++HG
Sbjct: 1   MREIVLDTETTGLDPAEGHRIIEIGCIEILHTIPTGQIFHVYIDP--QRDIPEDAVRVHG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT EFL  KP F+ I SEF  F    +A+ +AHNA FD+ F+NAEL  +  +P+D  R++
Sbjct: 59  ITAEFLAGKPVFADIASEFLAFIG--DAKLVAHNAAFDMRFLNAELGLLGLEPIDSERVV 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++ARR+HP + N L++LC RYGI  + R+KHGALLDS +L+DVY +++ GG Q    
Sbjct: 117 DTLALARRRHPGASNSLDALCNRYGIDNTRRTKHGALLDSEILADVYAELL-GGRQAALT 175

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
           F+T      ++     P     +R  PL + ++ +E D H   I  LG  AIW  Y+
Sbjct: 176 FET-ATALRQDNTHQTP---FRQRPVPLESALSSQERDAHRAFIAKLGDKAIWVSYL 228


>gi|49474836|ref|YP_032877.1| DNA polymerase III epsilon chain [Bartonella henselae str.
           Houston-1]
 gi|49237641|emb|CAF26821.1| DNA polymerase III epsilon chain [Bartonella henselae str.
           Houston-1]
          Length = 235

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 104/234 (44%), Positives = 147/234 (62%), Gaps = 3/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD + DRIIEIG VE++D   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGRRFHVYLNPQGVIIPDEVVAVHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LK++ SFS I  EF +F N   A  IAHNA FD+GF+NAEL R NK  +    I+DT
Sbjct: 61  NERLKNEKSFSDIADEFLEFIN--GATMIAHNASFDIGFLNAELARANKPLISVDNILDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRK P + N L+ LCKR+GI  SHR  HGALLD+ +L+D+YI+ ++GG Q    F 
Sbjct: 119 LAMARRKFPMAPNSLDVLCKRFGIDNSHRVFHGALLDAEILADIYIE-LIGGKQGVLVFG 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            N     + E       ++  R + L  R++ +E   H   ++ +G+ A+W+ +
Sbjct: 178 NNGSVHEESENDKNAFSAVKIRPQNLSPRLSVQEKTMHADFVKKMGEKALWNSF 231


>gi|319407879|emb|CBI81531.1| DNA polymerase III epsilon chain [Bartonella schoenbuchensis R1]
          Length = 235

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 104/236 (44%), Positives = 148/236 (62%), Gaps = 7/236 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD  +DRIIEIG VE++D   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLDKDSDRIIEIGCVEMVDRYLTKRQFHVYLNPQGVIIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LK++  F  I  EF +F +   A  +AHNA FD+ F+NAEL RINK  +    +IDT
Sbjct: 61  NERLKNEKKFEDIADEFLEFID--GATMVAHNASFDISFLNAELGRINKPLISVDNVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L+IAR+K P   N L+ LCKR+GI  S+R  HGALLD+ +L+DVYI+ ++GG Q    F 
Sbjct: 119 LAIARQKFPMGPNSLDVLCKRFGIDNSNRVLHGALLDAEILADVYIE-LIGGKQGVLSFD 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            N D    E  +   N+S   + +P  L +R++ +E D H   ++ +G  A+W+ +
Sbjct: 178 NNSD--LDENIQNGKNVSHTVKTRPHALPSRLSTQEKDMHADLVKKIGDKALWNNF 231


>gi|307943432|ref|ZP_07658776.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4]
 gi|307773062|gb|EFO32279.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4]
          Length = 239

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 100/243 (41%), Positives = 150/243 (61%), Gaps = 11/243 (4%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I FD ETTGL+ +  DR++EIG VEL ++  T +++ V++ P  R    EA ++HG+
Sbjct: 1   MREISFDTETTGLNPRGGDRLVEIGGVELWNHIPTGKSYHVYINPQ-RDMPEEAFRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++EFL DK  F  +  EF DF    +A  + HNA FD+GFIN EL+R  +  +   +++D
Sbjct: 60  SEEFLSDKQLFDQVADEFLDFVG--DATLVIHNAAFDMGFINMELERSGRRIISNDQVLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP+  N L++LC RYGI  S R KHGALLD+ +L++VY++ ++GG Q   G 
Sbjct: 118 TLDLARRKHPTGPNSLDALCSRYGIDNSKRVKHGALLDAEILAEVYLE-LIGGRQTALGL 176

Query: 186 KTNEDR------FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             +ED           E   + N +  +R  PL   I++ E   H   I+ +G+NAIW++
Sbjct: 177 TADEDAQTASSGGSAAEPGELGNFNAKQRPSPLTRPISEAEFAAHKAFIEGMGENAIWNK 236

Query: 240 YIS 242
           Y S
Sbjct: 237 YGS 239


>gi|319403493|emb|CBI77072.1| DNA polymerase III epsilon chain [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 235

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/236 (43%), Positives = 150/236 (63%), Gaps = 6/236 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGL+ ++DRIIEIG +E+++   T R F V+L P       E + +HG+T
Sbjct: 1   MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNPQDVIIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LKD+  F  I     DF ++  A  +AHNA FD+GF+NAEL+R+NK  ++   +IDT
Sbjct: 61  NERLKDEKKFDDIVDALLDFIDD--ATIVAHNANFDIGFLNAELERVNKPLINSDNVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LSIARR+ P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+ ++GG Q  F F 
Sbjct: 119 LSIARRRFPMGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIE-LIGGKQGIFSFD 177

Query: 187 TNE--DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             E  D    ++ K     ++  R + L  R++K+E D H   I+ +G  A+W+ +
Sbjct: 178 NYESCDVMNVQDNKNAF-YTIKTRSQALPQRLSKQEKDMHADLIKKIGDKALWNHF 232


>gi|192288734|ref|YP_001989339.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           TIE-1]
 gi|192282483|gb|ACE98863.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 232

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 103/241 (42%), Positives = 145/241 (60%), Gaps = 13/241 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T RT+  +L P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHQYLNPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +  EF +F    +A  + HNA FD+GFINAEL R+++ P+   R++D
Sbjct: 60  SSEFLADKPLFAHVADEFLEFIG--DAPLVIHNASFDIGFINAELSRLSRAPVPRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG--SQINF 183
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI  ++G   SQ+  
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSQLIL 176

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
                E      E +        +R  PL  R+T+ +L+ H   I T+G+ AIW  Y+ +
Sbjct: 177 ADVPAEVVGAASENRR------RQRPAPLPNRLTEADLEAHRAFIATMGEKAIWPDYLPA 230

Query: 244 N 244
            
Sbjct: 231 G 231


>gi|118591451|ref|ZP_01548849.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM
           12614]
 gi|118436123|gb|EAV42766.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM
           12614]
          Length = 237

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 100/239 (41%), Positives = 150/239 (62%), Gaps = 9/239 (3%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I FD ETTGL+ +  DR++EIG VEL+++  T +++ V++ P  R    EA ++HG+
Sbjct: 1   MREISFDTETTGLNPRGGDRLVEIGGVELINHVATGKSYHVYINPQ-RDMPEEAFRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F  +  EF +F    +A  + HNA FD+GFIN EL+R  +  +  S+++D
Sbjct: 60  SVEFLSDKPLFEHVADEFLEFVG--DATLVIHNAAFDMGFINMELERAGRRTIPNSQVLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHPS  N L++LC RYGI  S R KHGALLD+ +L++VY++ ++GG Q   G 
Sbjct: 118 TLDLARRKHPSGPNSLDALCSRYGIDNSKRIKHGALLDAEILAEVYLE-LIGGRQTALGL 176

Query: 186 KTNEDRFFKE----EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            T+E+         E   +   +  KR  PL   + + EL+ H   I+ +G +AIW +Y
Sbjct: 177 ITDEEESSSASASFEPGELGTFNARKRPTPLQRLLQESELEAHKAFIEGMGDSAIWSKY 235


>gi|217978678|ref|YP_002362825.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2]
 gi|217504054|gb|ACK51463.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2]
          Length = 235

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 103/240 (42%), Positives = 147/240 (61%), Gaps = 16/240 (6%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD K   RI+EIGAVELL+   T ++F V++ P  R    EA ++HGI
Sbjct: 1   MREIVLDTETTGLDPKQGHRIVEIGAVELLNSIPTGQSFHVYIHPE-RDMPDEAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL  KP F+ I     DF  E  A+ IAHNA+FD  F+NAE  R   +PL   R++D
Sbjct: 60  SLEFLTGKPLFAEIVPALIDFLGE--AKIIAHNAEFDFRFLNAEFLRAEAEPLAWERVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INF 183
           TL++ARR+ P + N L++LC R+G+  S R KHGALLD+ +L++VY + + GG Q  + F
Sbjct: 118 TLALARRRFPGASNSLDALCARFGVDTSRRVKHGALLDAEILAEVYAE-LCGGRQAALVF 176

Query: 184 GFKTNEDRFFKEEKKTVPNISLLK-RDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           G     D             +L++ R +PL  +++ +E+  H   + TLG+ AIW  Y+S
Sbjct: 177 GGGLGSD--------AATEAALMRERPEPLAPQLSPQEVAAHAAFVATLGEKAIWQAYLS 228


>gi|209883542|ref|YP_002287399.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans
           OM5]
 gi|209871738|gb|ACI91534.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans
           OM5]
          Length = 230

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 99/235 (42%), Positives = 144/235 (61%), Gaps = 10/235 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD+ + DR++EIG VE+ ++  T +T+ V++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDALRGDRLVEIGCVEMFNHMPTGQTYHVYINPE-RDMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+++  EF +F    +A  I HNA FD+GFIN EL R+ +  +   R++D
Sbjct: 60  STEFLADKPLFAAVADEFLEFIG--DAPLIIHNASFDIGFINMELDRLKRAAIPCERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI  ++G  Q +   
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSSLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
              E       +  V  ++   R+ PL +RIT EE + H   + TLG + +W  +
Sbjct: 177 AETE-----RTQIHVVEVTRRVREVPLASRITVEEREAHRAFVATLGDHPLWAEF 226


>gi|39933378|ref|NP_945654.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
           CGA009]
 gi|39653003|emb|CAE25745.1| putative DNA polymerase III epsilon chain [Rhodopseudomonas
           palustris CGA009]
          Length = 232

 Score =  191 bits (486), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 103/241 (42%), Positives = 144/241 (59%), Gaps = 13/241 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T RT+  +L P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHQYLNPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +  EF +F    +A  + HNA FD+GFINAEL R+++ P+   R++D
Sbjct: 60  SSEFLADKPLFAHVADEFLEFIG--DAPLVIHNASFDIGFINAELSRLSRAPVPRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG--SQINF 183
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI  ++G   SQ+  
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSQLIL 176

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
                E      E +        +R  PL  R+T  +L+ H   I T+G+ AIW  Y+ +
Sbjct: 177 ADVPVEVAGAASESRR------RQRPAPLPNRLTDADLEAHRTFIATMGEKAIWPDYLPA 230

Query: 244 N 244
            
Sbjct: 231 G 231


>gi|83953070|ref|ZP_00961792.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1]
 gi|83842038|gb|EAP81206.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1]
          Length = 228

 Score =  191 bits (485), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 98/232 (42%), Positives = 150/232 (64%), Gaps = 8/232 (3%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D ++ DRI+EIGAVEL+ +  T  T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGNTYHQYINPE-RSMPAEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL+DKP F+ I  +F DF    +++ + HNA FD+ F+NAEL+ +    +   + +D
Sbjct: 60  GDEFLRDKPKFAQIGQDFLDFIG--DSKLVIHNAAFDIKFLNAELKWMGLPQIPWEQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR++ P S   L++LC+R+GI  + R+ HGALLDS +L+DVY++ ++GG Q +FG 
Sbjct: 118 TLAIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILADVYLE-LIGGRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            T  +   K+E  T P+ +   R  PL +RIT +E   H + +  LG +A+W
Sbjct: 177 STKPE---KKEGDTTPDWTPKPRPTPLPSRITPQEAAAHTEFVDKLGDSAVW 225


>gi|218680719|ref|ZP_03528616.1| DNA polymerase III subunit epsilon [Rhizobium etli CIAT 894]
          Length = 186

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/183 (50%), Positives = 122/183 (66%), Gaps = 7/183 (3%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGITDEFLKDK  F+ +  E   FF   +A+WIAHNA FD+GFINAEL RI   P+ P 
Sbjct: 1   MHGITDEFLKDKKPFAEVAEEILAFFG--DAKWIAHNATFDMGFINAELARIGLPPILPE 58

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           R++DTLS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+ M+GG Q 
Sbjct: 59  RVVDTLSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIE-MIGGRQA 117

Query: 182 NFGFKT----NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            FG  T       R    E+  V   S+L+R +PL  R+++ E   H+  +  LG+  IW
Sbjct: 118 AFGLSTATSGQNGRGDMAEEDDVVIASVLERPRPLAPRLSQSEAQAHEALVAKLGEKGIW 177

Query: 238 DRY 240
            +Y
Sbjct: 178 AKY 180


>gi|319780604|ref|YP_004140080.1| DNA polymerase III, subunit epsilon [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166492|gb|ADV10030.1| DNA polymerase III, epsilon subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 233

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/231 (44%), Positives = 146/231 (63%), Gaps = 4/231 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLDS++DR+IE+G VEL++   T RTF  ++ P GR    EA  +HGI+
Sbjct: 1   MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHVEAQAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L  KP+F+ I  E+ DF +   A+ +AHNA FDVGF+N E  R+    +D   ++DT
Sbjct: 61  AADLAGKPTFAEIVQEWLDFTD--GAKLVAHNATFDVGFLNVEFGRLGHPVIDNGVVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LC+RYGI  + R+KHGALLDS LL++VYI+ ++GG Q      
Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNTKRTKHGALLDSELLAEVYIE-LIGGKQAALILD 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           +       E  + +  I +  R  PL  R+T+ E   H   + TLG+ A+W
Sbjct: 178 SATAPAQGENVRQI-EIVVAPRPAPLPPRVTEAERAAHAGMVGTLGEKALW 227


>gi|316931718|ref|YP_004106700.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
           DX-1]
 gi|315599432|gb|ADU41967.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           DX-1]
          Length = 232

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/241 (42%), Positives = 144/241 (59%), Gaps = 13/241 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T RT+  +L P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHRYLNPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +  EF +F  +     + HNA FD+GFINAEL R+++ P+   R++D
Sbjct: 60  SAEFLADKPLFAQVADEFLEFIGDD--PLVIHNASFDIGFINAELSRLSRAPVPRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG--SQINF 183
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI  ++G   SQ+  
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSQLIL 176

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
                E      E +        +R  PL  R+T  +L+ H   I T+G+ AIW  Y+++
Sbjct: 177 ADVPAEVVGAASENRR------RQRPAPLPNRLTDADLEAHRAFIATMGEKAIWPDYLAA 230

Query: 244 N 244
            
Sbjct: 231 G 231


>gi|83942021|ref|ZP_00954483.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36]
 gi|83847841|gb|EAP85716.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36]
          Length = 228

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/232 (41%), Positives = 150/232 (64%), Gaps = 8/232 (3%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D ++ DRI+EIGAVEL+ +  T  T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGNTYHQYINPE-RSMPAEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I  +F DF    +++ + HNA FD+ F+NAEL+ +    +   + +D
Sbjct: 60  GDDFLRDKPKFAQIGQDFLDFIG--DSKLVIHNAAFDIKFLNAELKWMGLPQIPWEQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR++ P S   L++LC+R+GI  + R+ HGALLDS +L+DVY++ ++GG Q +FG 
Sbjct: 118 TLAIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILADVYLE-LIGGRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            T  +   K+E  T P+ +   R  PL +RIT +E   H + +  LG +A+W
Sbjct: 177 STKPE---KKEGDTTPDWTPKPRPTPLPSRITPQEAAAHTEFVDKLGDSAVW 225


>gi|158421629|ref|YP_001522921.1| DNA polymerase III [Azorhizobium caulinodans ORS 571]
 gi|158328518|dbj|BAF86003.1| DNA polymerase III [Azorhizobium caulinodans ORS 571]
          Length = 240

 Score =  188 bits (477), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 95/242 (39%), Positives = 145/242 (59%), Gaps = 18/242 (7%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++ K DR++EIG VE+++   T  TF V++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLEANKGDRVVEIGCVEMVNRILTGNTFHVYINPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +   F +F        + HNA FD+GF+NAEL R++++P+   R++D
Sbjct: 60  SSEFLSDKPKFAEVADAFLEFIAGDT--LVIHNAAFDIGFLNAELARLSREPIARDRVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+++ARRKHP +   L+ L KRYGI  S R KHGALLDS LL++VY +++ G   +  G 
Sbjct: 118 TVALARRKHPGASAKLDDLMKRYGIDASRRVKHGALLDSELLAEVYSELLGGRQAMLVG- 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK------PLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                    +E    P + +           PL +R++ EE+  H + I  +G+  IW++
Sbjct: 177 -------LADETSEAPRLVVEVAVAARARPVPLPSRLSAEEIAAHREFIGGMGEKGIWNQ 229

Query: 240 YI 241
           Y+
Sbjct: 230 YL 231


>gi|87119404|ref|ZP_01075302.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Marinomonas sp. MED121]
 gi|86165795|gb|EAQ67062.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Marinomonas sp. MED121]
          Length = 235

 Score =  187 bits (476), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 104/234 (44%), Positives = 145/234 (61%), Gaps = 13/234 (5%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTG+D K   RIIEIG VE+LD   T   F V++ P+ R+   EA ++HGI
Sbjct: 2   MRQIILDTETTGIDPKQGHRIIEIGCVEMLDRKLTKNHFHVYINPD-RQVEEEAFQVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRI 123
           +DEFL DKP F  +  +F ++   Q AE + HNA FDVGFI+ E  ++   P   D   +
Sbjct: 61  SDEFLADKPRFHQVAQDFLNYI--QGAELVIHNAPFDVGFIDHEFAKLGNFPKVADICSV 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL+ AR KHP  +N+L++LCKRYGI  SHR  HGALLDS +L+DVY+ +M GG Q + 
Sbjct: 119 FDTLAFARSKHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYL-LMTGG-QTSL 176

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDKTIQTLGKNA 235
           G   +ED     +  +VP I  L  D+P+    +  + ELD H++ +  + K A
Sbjct: 177 GLGDDED---GADGMSVPTIRRLSPDRPMIKVLKANQAELDLHNERLDLIEKQA 227


>gi|254502882|ref|ZP_05115033.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11]
 gi|222438953|gb|EEE45632.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11]
          Length = 239

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 97/244 (39%), Positives = 146/244 (59%), Gaps = 13/244 (5%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64
           MR+I FD ETTGL+ +  DR++EIG VEL+++  T   + V++ P  +++ PE A K+HG
Sbjct: 1   MREISFDTETTGLNPRGGDRLVEIGGVELINHVPTGNAYHVYINP--QRDMPEGAFKVHG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +++EFL DKP F  +  EF +F    +   + HNA FD+GFIN EL+R  +  +  +++I
Sbjct: 59  LSEEFLSDKPLFEQVADEFLEFVG--DGTLVIHNAAFDMGFINMELERCGRRTISNTQVI 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL IARRKHPS  N L++LC RYGI  S R KHGALLD+ +L++VY++ M+GG Q    
Sbjct: 117 DTLEIARRKHPSGPNSLDALCSRYGIDNSKRVKHGALLDAEILAEVYLE-MIGGKQRALI 175

Query: 185 FKTNEDRFF------KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
              +E+           E   + +     R  PL   +  EE   H   +  +G +A+W 
Sbjct: 176 LDPDEEDGLIGSGDAGSEPGELGSFKARPRPTPLSALLRGEEFAAHKAFVAGMGDSALWK 235

Query: 239 RYIS 242
           +Y+ 
Sbjct: 236 KYVG 239


>gi|148251776|ref|YP_001236361.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. BTAi1]
 gi|146403949|gb|ABQ32455.1| DNA polymerase III, epsilon subunit [Bradyrhizobium sp. BTAi1]
          Length = 232

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 98/239 (41%), Positives = 137/239 (57%), Gaps = 8/239 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD+ + DR++EIG VE+++   T + F  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHRYINPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F  I  EF +F    +A  + HNA FD+GFINAEL R+ +  +   R++D
Sbjct: 60  SSEFLADKPLFHEIVEEFLEFIG--DAPLVIHNASFDIGFINAELDRVKRAAIPRERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VY+  +VG  Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVD-LVGARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
             +            P     +R+ PL  R+T  E + H   I TLG   IW  +++  
Sbjct: 177 TQDTQEIRVGAAGDTPR---RQRETPLAARVTDAEREAHRAFIATLGDKPIWMEFLAGT 232


>gi|163850914|ref|YP_001638957.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens
           PA1]
 gi|163662519|gb|ABY29886.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens
           PA1]
          Length = 241

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/251 (39%), Positives = 149/251 (59%), Gaps = 22/251 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M  +  +R+IV D ETTG +++N DR+IEIG VEL+++ +T  TF   + P  R  S  A
Sbjct: 1   MESQKMLREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGI+D  L DKP F+ +   F +F    +A  + HNA FDVGF+N E  R+   P  
Sbjct: 60  FAVHGISDAMLADKPVFAEVVDAFLEFCG--DARLVIHNAPFDVGFLNMEFARLG--PAA 115

Query: 120 PSRI-----IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           P  I     +DTL +ARRKHP + N+L++LC RYG+  + R KHGALLD+ +L++VY+++
Sbjct: 116 PKAIALEDVVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVEL 175

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD----KPLFTRITKEELDEHDKTIQT 230
           + GG Q + G          E  +TV   +L        +P+ +R+T+ E   HD  +++
Sbjct: 176 L-GGKQTSLGLS------IAEPAETVALGALTDSGPVGPRPIRSRLTEGERLRHDSFVES 228

Query: 231 LGKNAIWDRYI 241
           LG NA+W  Y+
Sbjct: 229 LGTNAVWREYM 239


>gi|103488315|ref|YP_617876.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis
           RB2256]
 gi|98978392|gb|ABF54543.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis
           RB2256]
          Length = 231

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/240 (42%), Positives = 144/240 (60%), Gaps = 22/240 (9%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTG D +N DR++EIG VEL+D  +T  TF  +  P  R     A  +HG+
Sbjct: 1   MREIIFDTETTGFDPRNGDRLVEIGCVELIDRRETGVTFHAYFNPE-RDMPAAAEAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL DKP F++   E  DFF   +A  IAHNA FD GF+NAEL+RI + PLD +R+  
Sbjct: 60  SSQFLSDKPLFAARVDELLDFFG--DAPLIAHNAAFDFGFVNAELERIGRPPLDMARMCC 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +AR+ HP +++ L++LC RYGI  SHR KHGALLD+ LL+ +YI+ M GG QI  G 
Sbjct: 118 TVQMARKLHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAHLYIE-MTGGRQIGLGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLL--KRD------KPLFTRITKEELDEHDKTIQTLGKNAIW 237
            ++           +P  SLL  +RD      +P     +  EL  H + +  L +  +W
Sbjct: 177 ASS--------SAALPTASLLAARRDPARPFREPRPHMASAAELARHAEFVAGLNQ-PLW 227


>gi|91974903|ref|YP_567562.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB5]
 gi|91681359|gb|ABE37661.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 231

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/235 (42%), Positives = 136/235 (57%), Gaps = 9/235 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T + F  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIYNRMPTGQAFHRYINPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +  EF DF    +A  + HNA FD GF+NAEL R+++  +   R++D
Sbjct: 60  SAEFLADKPLFAQVVDEFLDFIG--DAPLVIHNASFDAGFLNAELARLSRAAIPRERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI  ++G  Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
                    E      +    +R  PL  R+T+ +LD H   I T+G  AIW  Y
Sbjct: 177 A----EVPSERAGQGGDKPRRQRSTPLAARVTELDLDAHRAFIATMGDKAIWKEY 227


>gi|126730109|ref|ZP_01745921.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37]
 gi|126709489|gb|EBA08543.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37]
          Length = 229

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/234 (43%), Positives = 145/234 (61%), Gaps = 7/234 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  + DRI+EIGAVEL ++  T  T+  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGFEPEQGDRIVEIGAVELFNHVPTGETYHQYINPE-RSMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I  EF  F    +++ + HNA FDV F+NAEL+  N+  L     ID
Sbjct: 60  GDDFLRDKPVFAKIVDEFRTFIG--DSKLVIHNAAFDVKFLNAELRWANRPTLAKDCAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IARRK P S   L++LC+R+GI  S R+ HGALLDS +L++VY++ ++GG Q +FG 
Sbjct: 118 TLDIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLE-LIGGKQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            +  +       +TV N     R  PL +R+T  E   H   ++ LG+NAIW+R
Sbjct: 177 TSASNT--PSVGETVTNWRPKPRSTPLPSRLTDTEKAAHAAFVEKLGENAIWNR 228


>gi|218529738|ref|YP_002420554.1| DNA polymerase III subunit epsilon [Methylobacterium
           chloromethanicum CM4]
 gi|218522041|gb|ACK82626.1| DNA polymerase III, epsilon subunit [Methylobacterium
           chloromethanicum CM4]
          Length = 236

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 148/245 (60%), Gaps = 22/245 (8%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+IV D ETTG +++N DR+IEIG VEL+++ +T  TF   + P  R  S  A  +HGI
Sbjct: 2   LREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGAFAVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123
           +D  L DKP F+ +   F +F +  +A  + HNA FDVGF+N E  R+   P  P  I  
Sbjct: 61  SDAMLADKPVFAEVVDAFLEFCS--DARLVIHNAPFDVGFLNMEFARLG--PAAPKAIAL 116

Query: 124 ---IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              +DTL +ARRKHP + N+L++LC RYG+  + R KHGALLD+ +L++VY++++ GG Q
Sbjct: 117 EDVVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQ 175

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRD----KPLFTRITKEELDEHDKTIQTLGKNAI 236
            + G          E  +TV   +L        +P+ +R+T+ E   HD  +++LG NA+
Sbjct: 176 TSLGLS------IAEPAETVALGALTDSGPVGPRPIRSRLTEGERLRHDSFVESLGTNAV 229

Query: 237 WDRYI 241
           W  Y+
Sbjct: 230 WREYM 234


>gi|240138045|ref|YP_002962517.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
 gi|240008014|gb|ACS39240.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
          Length = 236

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 147/245 (60%), Gaps = 22/245 (8%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+IV D ETTG +++N DR+IEIG VEL+++ +T  TF   + P  R  S  A  +HGI
Sbjct: 2   LREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGAFAVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123
           +D  L DKP F+ +   F +F    +A  + HNA FDVGF+N E  R+   P  P  I  
Sbjct: 61  SDAMLADKPVFAEVVDAFLEFCG--DARLVIHNAPFDVGFLNMEFARLG--PAAPKAIAL 116

Query: 124 ---IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              +DTL +ARRKHP + N+L++LC RYG+  + R KHGALLD+ +L++VY++++ GG Q
Sbjct: 117 EDVVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQ 175

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRD----KPLFTRITKEELDEHDKTIQTLGKNAI 236
            + G          E  +TV   +L        +P+ +R+T+ E   HD  +++LG NA+
Sbjct: 176 TSLGLS------IAEPAETVALGALTDSGPVGPRPIRSRLTEGERLRHDSFVESLGTNAV 229

Query: 237 WDRYI 241
           W  Y+
Sbjct: 230 WREYM 234


>gi|254560605|ref|YP_003067700.1| DNA polymerase III subunit epsilon [Methylobacterium extorquens
           DM4]
 gi|254267883|emb|CAX23749.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           DM4]
          Length = 236

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 147/245 (60%), Gaps = 22/245 (8%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+IV D ETTG +++N DR+IEIG VEL+++ +T  TF   + P  R  S  A  +HGI
Sbjct: 2   LREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGAFAVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123
           +D  L DKP F+ +   F +F    +A  + HNA FDVGF+N E  R+   P  P  I  
Sbjct: 61  SDAMLADKPVFAEVVDAFLEFCG--DARLVIHNAPFDVGFLNMEFARLG--PAAPKAIAL 116

Query: 124 ---IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              +DTL +ARRKHP + N+L++LC RYG+  + R KHGALLD+ +L++VY++++ GG Q
Sbjct: 117 EDVVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQ 175

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRD----KPLFTRITKEELDEHDKTIQTLGKNAI 236
            + G          E  +TV   +L        +P+ +R+T+ E   HD  +++LG NA+
Sbjct: 176 TSLGLS------IAEPAETVTLGALTDSGPVGPRPMRSRLTEGERLRHDSFVESLGTNAV 229

Query: 237 WDRYI 241
           W  Y+
Sbjct: 230 WREYM 234


>gi|332306364|ref|YP_004434215.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173693|gb|AEE22947.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 235

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 103/241 (42%), Positives = 149/241 (61%), Gaps = 18/241 (7%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D +   RIIEIG VEL++   T  TF V++ P  R    EA+++HGI
Sbjct: 1   MRQIVLDTETTGIDPRQGHRIIEIGCVELVNRRLTGNTFHVYINPQ-RLIEQEAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPS 121
           T+E+L DKP F+ I ++F  F N   A+ + HNA FDVGF++ E  R+     K   D  
Sbjct: 60  TNEYLLDKPVFADIAADFAQFIN--GAQLVIHNAPFDVGFMDHEFDRVASMVGKKTADMC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR+ HP  +N+L++LCKRYGI  SHR  HGALLDS +L+DVY+ M  G + +
Sbjct: 118 TVLDTLEMARQIHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLMMTGGQTAL 177

Query: 182 NFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
           N   K+N D   + E  ++  P+++ LK       R T +EL EH+K +  +   G + +
Sbjct: 178 NLSGKSNSDGGSQVEPIRRLDPSLNQLK-----VLRATADELAEHEKRLDLVTKEGGSCL 232

Query: 237 W 237
           W
Sbjct: 233 W 233


>gi|299133202|ref|ZP_07026397.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2]
 gi|298593339|gb|EFI53539.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2]
          Length = 230

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 100/238 (42%), Positives = 144/238 (60%), Gaps = 16/238 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD+ + DR++EIG VE+ ++  T +T+ V++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDALRGDRLVEIGCVEMFNHMPTGQTYHVYINPE-RDMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+++  +F  F    +A  I HNA FD+GFIN EL+R+ +  +   R++D
Sbjct: 60  SSEFLSDKPLFAAVAEDFLTFIG--DAPLIIHNASFDIGFINMELERVKRAAIPRERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI  ++G  Q +   
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSSL-- 174

Query: 186 KTNEDRFFKEEKKT---VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
                    E + T   V  +    R+ PL  R+T EE++ H   + TLG N IW  +
Sbjct: 175 ------ILAETRTTSIRVVEVERRVREVPLPPRMTPEEIEAHRAFVATLGDNPIWREF 226


>gi|85714087|ref|ZP_01045076.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A]
 gi|85699213|gb|EAQ37081.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A]
          Length = 230

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 97/237 (40%), Positives = 140/237 (59%), Gaps = 9/237 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++E+G VE+ +   T +TF  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPVRGDRLVELGCVEIFNRMPTGQTFHCYINPE-RDMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +  EF +F    +A  I HNA FD+ FINAEL+R+ +  +   R++D
Sbjct: 60  SSEFLADKPLFAQVVDEFLEFIG--DAPLIIHNASFDISFINAELERLKRQVIGRERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI  ++G  Q     
Sbjct: 118 TLLIARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                R    +      +   +R  PL +R+T+ +   H   + TLG+ AIW  +++
Sbjct: 177 TETTSR----QLGGTLELPRRQRTVPLASRVTEADRIAHRNFVATLGEKAIWTEFLA 229


>gi|254472171|ref|ZP_05085571.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062]
 gi|211958454|gb|EEA93654.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062]
          Length = 236

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 99/241 (41%), Positives = 148/241 (61%), Gaps = 12/241 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I FD ETTGL+    DR++EIG VEL+++  T RT  +++ P  R    EA ++HG+
Sbjct: 1   MREISFDTETTGLNPLDGDRLVEIGGVELINFIPTGRTCHLYVNPQ-RDMPEEAFRIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +  EF DF  +  A  + HNA FD+GFIN EL R NK  +  ++++D
Sbjct: 60  SAEFLSDKPVFADVADEFLDFVGD--ARLVIHNAPFDMGFINMELARCNKPKISNTQVLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRK P+    L++LC RYGI  S R  HGALLD+ LL++VY++M  GG Q N G 
Sbjct: 118 TLKLARRKFPTGSVSLDALCSRYGIDNSKRVYHGALLDAELLAEVYLEMN-GGKQKNLGL 176

Query: 186 KTNE-----DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             ++     D    ++ K    I+  +R  PL   +++EE++ H K I  +  +  W++Y
Sbjct: 177 MPDDEAIDLDNIGDDQPKQ--RIAAKQRPVPLSPALSEEEIEAHAKFIAGMKTDPAWNKY 234

Query: 241 I 241
           +
Sbjct: 235 L 235


>gi|21328725|gb|AAM48731.1| DNA polymerase III, epsilon subunit [uncultured marine
           proteobacterium]
          Length = 231

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 101/235 (42%), Positives = 151/235 (64%), Gaps = 8/235 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHG 64
           MR+IV D ETTG + S+ DRI+EIGAVEL ++  T RT+  ++ P   +N PEA   +HG
Sbjct: 1   MREIVLDTETTGFEPSEGDRIVEIGAVELFNHLPTGRTYHQYINP--ERNMPEAAFNVHG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +++EFL DKP F +I  EF DF    +++ + HNA FD+ F+NAEL  +N+  L   + I
Sbjct: 59  LSEEFLSDKPIFKNIAQEFIDFI--ADSKLVIHNASFDMKFLNAELGWVNRPALPNDQTI 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL+IARRK P S   L++LC+R+GI  S R+ HGALLDS +L++VY++ +VGG Q +  
Sbjct: 117 DTLAIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLE-LVGGRQPDLV 175

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
               E +   +  ++ P+     R KPL +R++ +E   H+  I  LG +A+W +
Sbjct: 176 LSGPEVKTSTDGSQS-PDWRPAPRPKPLASRLSDKEKAAHETFIAALGSDALWTK 229


>gi|254707409|ref|ZP_05169237.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|261314895|ref|ZP_05954092.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|261303921|gb|EEY07418.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
          Length = 201

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/205 (43%), Positives = 129/205 (62%), Gaps = 6/205 (2%)

Query: 40  TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
           T RTF  F+ P GR+  P+AL +HGI++E L DKP F+ I  EF +F +   A  +AHNA
Sbjct: 1   TGRTFHKFINPQGRQVHPDALAVHGISNEQLLDKPVFAEILDEFLEFID--GARLVAHNA 58

Query: 100 KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
            FD+GFINAEL R+++  +    I+DTL++ARRKHP   N L++LCKRYGI  SHR+ HG
Sbjct: 59  MFDLGFINAELARLDQAEITSEHIVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHG 118

Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEK--KTVPNISLLKRDKPLFTRIT 217
           ALLD+ +L++VYI+ ++GG Q   G          + +   + P + L  R +PL  RI+
Sbjct: 119 ALLDAQILAEVYIE-LIGGKQTALGLTMESGSAGGDSRGNGSAP-VVLAARPRPLPPRIS 176

Query: 218 KEELDEHDKTIQTLGKNAIWDRYIS 242
             E   H   ++ +G  A+W +Y+S
Sbjct: 177 DAERAAHAALVEKMGDKAVWKKYLS 201


>gi|146337369|ref|YP_001202417.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. ORS278]
 gi|146190175|emb|CAL74167.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Bradyrhizobium sp. ORS278]
          Length = 232

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/238 (40%), Positives = 137/238 (57%), Gaps = 8/238 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD+ + DR++EIG VE+++   T + F  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHRYINPQ-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F  +  +F  F    +A  + HNA FD+GFINAEL R+ +  +   R++D
Sbjct: 60  STEFLSDKPLFHEVVEDFLAFIG--DAPLVIHNASFDIGFINAELDRVKRAAIPRERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VY+  +VG  Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVD-LVGARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
             +            P     +RD PL  R+T+ E + H   + TLG   IW  +++ 
Sbjct: 177 TQDAQEIRIGNAGDTPR---RQRDVPLAPRVTEAEREAHRAFVATLGDKPIWMDFLTG 231


>gi|255264769|ref|ZP_05344111.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62]
 gi|255107104|gb|EET49778.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62]
          Length = 231

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/237 (42%), Positives = 149/237 (62%), Gaps = 12/237 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + ++ DRI+EIGAVELL++  T RT+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFEPNEGDRIVEIGAVELLNHVPTGRTYHQYINPK-RSMPKEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I   F DF      + I HNA FD+ F+NAEL  +N+  L   + +D
Sbjct: 60  GDDFLRDKPFFADIAQAFVDFVGTD--KMIIHNAAFDMKFLNAELGWVNRPLLPMDQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IARR+ P S   L++LC+R+GI  S R+ HGALLDS +L++VY++ ++GG Q +FG 
Sbjct: 118 TLAIARRRFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLE-LIGGRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNIS---LLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            T      KEEKK V + +      R  PL + +++EE   H   +  LG + +W +
Sbjct: 177 NTAP----KEEKKFVTSTTDNRPKSRSTPLVSLLSEEEATAHSAFVDKLGDDVLWKK 229


>gi|188580742|ref|YP_001924187.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001]
 gi|179344240|gb|ACB79652.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001]
          Length = 236

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 96/241 (39%), Positives = 144/241 (59%), Gaps = 14/241 (5%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+IV D ETTG D+KN DR+IEIG VEL+++ +T + +   + P  R  S  A  +HGI
Sbjct: 2   LREIVLDTETTGTDAKNGDRLIEIGCVELINHVQTGKFYHQLINPQ-RAVSEGAFAVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123
           +D  L DKP F+ +   F  F    +A  + HNA FDVGF+N E  R+   P  P  I  
Sbjct: 61  SDAMLADKPVFADVVDAFVAFCG--DARLVIHNAPFDVGFLNMEFARLG--PAAPKAIPL 116

Query: 124 ---IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              +DTL +ARRKHP + N+L++LC RYG+  + R KHGALLD+ +L++VY++++ GG Q
Sbjct: 117 EDVVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQ 175

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            + G    E       +    +  +  R  P+ +R+T+ E   HD  +++LG NA+W  Y
Sbjct: 176 TSLGLSIAEPTEAIAIESATDSGPVGPR--PMRSRLTESERLRHDSFVESLGTNAVWREY 233

Query: 241 I 241
           +
Sbjct: 234 L 234


>gi|109898679|ref|YP_661934.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
           T6c]
 gi|109700960|gb|ABG40880.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
           T6c]
          Length = 235

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 102/241 (42%), Positives = 148/241 (61%), Gaps = 18/241 (7%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D +   RIIEIG VELL+   T  TF V++ P  R    EA+++HGI
Sbjct: 1   MRQIVLDTETTGIDPRQGHRIIEIGCVELLNRRLTGNTFHVYVNPQ-RLIEQEAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPS 121
           T+E+L DKP F+ + ++F  F +   A+ + HNA FDVGF++ E  R+     K   D  
Sbjct: 60  TNEYLLDKPLFADVAADFVKFIS--GAQLVIHNAPFDVGFMDHEFARVAAMAGKKTSDMC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR+ HP  +N+L++LCKRYGI  SHR  HGALLDS +L+DVY+ M  G + +
Sbjct: 118 TVLDTLEMARQIHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLMMTGGQTDL 177

Query: 182 NFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
           N   K+N D   + E  ++  P ++ LK       R T +EL EH+K +  +   G + +
Sbjct: 178 NLSGKSNSDGGSQVERIRRLDPQLNQLK-----VLRATADELVEHEKRLDLVNKEGGSCL 232

Query: 237 W 237
           W
Sbjct: 233 W 233


>gi|90421821|ref|YP_530191.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB18]
 gi|90103835|gb|ABD85872.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 231

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 98/239 (41%), Positives = 139/239 (58%), Gaps = 17/239 (7%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T +TF  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGQTFHRYINPE-RDMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL  KP F+ +  EF +F  E  A  + HNA FD+GFINAEL +I + P+   R++D
Sbjct: 60  SAEFLSTKPLFAEVVDEFLEFIAE--APLVIHNASFDIGFINAELGKIARPPIPRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-- 183
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI  ++G  Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSQLIL 176

Query: 184 --GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
                +  +R     ++        +R+ PL  R+T  +   H + + TLG   IW+ Y
Sbjct: 177 AEAAPSRSNRPGDAPRR--------QRETPLAARVTDADRIAHREFVATLGDKPIWNEY 227


>gi|27375751|ref|NP_767280.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27348889|dbj|BAC45905.1| DNA polymerase III epsilon chain [Bradyrhizobium japonicum USDA
           110]
          Length = 239

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 96/238 (40%), Positives = 136/238 (57%), Gaps = 8/238 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T +T+ V++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEMFNRMPTGQTYHVYINPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL  KP F  +   F +F    +A  + HNA FD+ FINAEL RI +  +   +++D
Sbjct: 60  SAEFLSTKPVFHEVADAFLEFIG--DAPLVIHNASFDISFINAELDRIKRAAIPREQLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VY+  +VG  Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVD-LVGARQSQLLL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
            +  +          P     +R  PL  RI+  E + H   I TLG  AIW+ ++ +
Sbjct: 177 ASEAEEIRINAAGDTPR---RQRPTPLAPRISDAEREAHRAFIATLGDKAIWNEFLPA 231


>gi|115522405|ref|YP_779316.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisA53]
 gi|115516352|gb|ABJ04336.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 229

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 93/236 (39%), Positives = 136/236 (57%), Gaps = 9/236 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+L+   T + +  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEILNRMPTGQIYHCYINPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL  KP F+ +  EF  F    +A  + HNA FD+GFINAEL R+++ P+   R++D
Sbjct: 60  SAEFLSTKPLFAEVAEEFLAFI--ADAPLVIHNASFDIGFINAELARLSQPPIPRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VY+  ++G  Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVD-LIGARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
                    E      +    +R+  L  R++  + + H   + TLG   IW+ Y+
Sbjct: 177 AETG----SERASRAADAPRRQRETALVARVSDADREAHRAFVATLGDKPIWNEYL 228


>gi|84514924|ref|ZP_01002287.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Loktanella vestfoldensis SKA53]
 gi|84511083|gb|EAQ07537.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Loktanella vestfoldensis SKA53]
          Length = 228

 Score =  181 bits (460), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 97/234 (41%), Positives = 140/234 (59%), Gaps = 8/234 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + S+ DRI+EIGAVEL+ +  T RT+  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGFEPSEGDRIVEIGAVELIGHMPTGRTYHQYINPQ-RTMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL DKP F  I  +F  F    +A+ + HNA FD+ F+NAEL  ++K  L  +R +D
Sbjct: 60  GDDFLADKPLFKDIADDFLTFIG--DAKLVIHNAAFDMKFLNAELGWLHKPALPMNRAVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IARRK P S   L++LC+R+GI  + R+ HGALLDS +L++VY++ ++GG Q +F  
Sbjct: 118 TLMIARRKFPGSPASLDALCRRFGIDNAARTLHGALLDSEILAEVYLE-LIGGRQPDFAL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                      +K         R  PL +R+T EE   H   +  +G +A+W R
Sbjct: 177 AQGSA---DSTQKNGAAWRAGPRPAPLASRLTAEETAAHTAFVNAMGDDAVWKR 227


>gi|255019824|ref|ZP_05291900.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
 gi|254970753|gb|EET28239.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
          Length = 243

 Score =  181 bits (459), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 99/248 (39%), Positives = 144/248 (58%), Gaps = 31/248 (12%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTG+D +   R+IEIGAVEL+D   T   +Q +L P GR + PEAL++HGI
Sbjct: 1   MRQVVLDTETTGIDPRQGHRVIEIGAVELVDREITEGRYQQYLNP-GRSSDPEALRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRII 124
            D+FL D+P F+ I  +F  F    +AE I HNA FD+ F+NAEL+R+ +  L +P R  
Sbjct: 60  RDDFLADQPDFADIVEDFLAFLG--DAELIIHNAPFDLAFLNAELERVGRPALQNPVR-- 115

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL  ARR+HP  +NDL++LC+RYG+  S R +HGALLD  +L++VY++M  G      G
Sbjct: 116 DTLVEARRRHPGQKNDLDALCRRYGVDNSRRQQHGALLDCEILAEVYLRMSGG----QLG 171

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK---------------EELDEHDKTIQ 229
            +   DR     +   P+++   +    F    +                EL  H+  ++
Sbjct: 172 MRLAADR-----EAQGPSVAEEGQAGAPFQAHAQAADRRRPLRLRRADAAELAAHEAYLR 226

Query: 230 TLGKNAIW 237
            LG  A+W
Sbjct: 227 GLGGKALW 234


>gi|332186931|ref|ZP_08388672.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. S17]
 gi|332012941|gb|EGI55005.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. S17]
          Length = 232

 Score =  181 bits (458), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 101/233 (43%), Positives = 141/233 (60%), Gaps = 9/233 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTG   S+ DR++EIG VEL++  +T RT+  +  P  R    EA  +HG+
Sbjct: 1   MREIVFDTETTGFKFSEGDRLVEIGCVELVNRVETGRTYHAYFNPE-RSMPAEAQAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRII 124
           +D FLKDKP F+   +EF DF    +A  IAHNA FD GFIN EL  +      + +R++
Sbjct: 60  SDAFLKDKPVFAEGVAEFLDFIG--DAPLIAHNATFDFGFINGELGALGFPHVCEKTRMV 117

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL+IAR KHP +++ L++LC RYGI  SHR  HGALLD+ LL+ VY+++M GG QI  G
Sbjct: 118 DTLAIARSKHPGAKHTLDALCSRYGIDRSHRVLHGALLDAQLLAQVYVELM-GGRQIGLG 176

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
              + D     +  TV     + R   +F R +  EL  H   ++ +  + IW
Sbjct: 177 LLAD-DAGQGTQTITVTRAPAIVRPPRVF-RPSDAELAAHAAFLKGI-ADPIW 226


>gi|75674304|ref|YP_316725.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi
           Nb-255]
 gi|74419174|gb|ABA03373.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi
           Nb-255]
          Length = 239

 Score =  181 bits (458), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 96/239 (40%), Positives = 140/239 (58%), Gaps = 9/239 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T +TF  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEMFNRMPTGQTFHRYINPE-RDMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL DKP F+ +  EF +F    +A  + HNA FD+ FINAEL R+ +  +   R++D
Sbjct: 60  SSDFLADKPLFAHVVDEFLEFIG--DAPLVIHNASFDISFINAELDRLKRQAIGRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI  ++G  Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
                R    ++     +   +R  PL +R+T  +   H + I TLG+ AIW  ++  +
Sbjct: 177 VETAPR----QRGGSLEMPRRQRTVPLASRVTAADRIAHREFIATLGEKAIWMEFLEQD 231


>gi|170750672|ref|YP_001756932.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657194|gb|ACB26249.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans
           JCM 2831]
          Length = 240

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 99/248 (39%), Positives = 141/248 (56%), Gaps = 22/248 (8%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+IV D ETTG ++K  DR+IEIGAVELL++  T RTF  +  P  R  S  A  +HG+
Sbjct: 2   LREIVLDTETTGTEAKGGDRLIEIGAVELLNHIPTGRTFHRYCNPQ-RPVSEGAFNVHGL 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           +D FL DKP F+ I  E   F    +   + HNA FDVGF+N E  R+  +   P+    
Sbjct: 61  SDAFLADKPVFAEIVGELLAFL--ADGRLVIHNAPFDVGFLNMEYARLGANAPPPIQLED 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +ARRKHP + N+L++LC RYGI  + R+KHGALLD+ +L++VY++++ GG Q +
Sbjct: 119 VVDTLPMARRKHPGAANNLDALCARYGIDNTRRTKHGALLDAQILAEVYVELL-GGKQTS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLF------TRITKEELDEHDKTIQTLGKNAI 236
            G          E +K  P                  +R+T  E   HD    +LG  AI
Sbjct: 178 LG--------LLEAEKAAPAAGSTALAAAPAAPRPYRSRLTDAERARHDSFRASLGPAAI 229

Query: 237 WDRYISSN 244
           W  YI ++
Sbjct: 230 WADYIGAD 237


>gi|154251704|ref|YP_001412528.1| DNA polymerase III subunit epsilon [Parvibaculum lavamentivorans
           DS-1]
 gi|154155654|gb|ABS62871.1| DNA polymerase III, epsilon subunit [Parvibaculum lavamentivorans
           DS-1]
          Length = 228

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/234 (41%), Positives = 142/234 (60%), Gaps = 15/234 (6%)

Query: 7   MRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLH 63
           MR+IV D ETTG+ S ND  R++EIG +EL ++  T + F  ++ P   ++ PE A ++H
Sbjct: 1   MREIVLDTETTGI-SPNDGHRLVEIGCLELFNHVVTGKYFHAYIDPE--RDMPEGAFRIH 57

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G++ +FL+ KP F+ +  +F  F  E     + HNA FD+GFINAEL+RI +  L  SR 
Sbjct: 58  GLSSDFLRGKPKFAEVADDFLAFIGED--PLVIHNAAFDMGFINAELKRIGRPALPVSRA 115

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL IARRK P ++N L++LC+R+G+  S R+KHGALLDS LL++VY+++M GG Q   
Sbjct: 116 TDTLDIARRKFPGAQNSLDALCRRFGVDNSGRTKHGALLDSELLAEVYLELM-GGRQPGL 174

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
             + +      E     P      RD  L  R+T+ E   HD  + TLG   +W
Sbjct: 175 VLQADYAGMKGERVTRAP------RDIALPPRLTEAEKAAHDAFVATLGGEPLW 222


>gi|86747524|ref|YP_484020.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           HaA2]
 gi|86570552|gb|ABD05109.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           HaA2]
          Length = 231

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 95/238 (39%), Positives = 136/238 (57%), Gaps = 9/238 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T + +  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIYNRMPTGQVYHQYINPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +   F DF    +A  + HNA FD+GFINAEL R+++  +   R++D
Sbjct: 60  SSEFLADKPVFAQVADAFIDFIG--DAPLVIHNASFDIGFINAELARLSRAAIPRERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI  ++G  Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
                    E      +    +R   L  R+T  +L+ H   I  +G  AIW+ Y ++
Sbjct: 177 A----EVPSERSGAGGDTPRRQRSIALTPRVTDADLEAHRAFIALMGDKAIWNEYTAA 230


>gi|90416118|ref|ZP_01224051.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90332492|gb|EAS47689.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 239

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 98/240 (40%), Positives = 147/240 (61%), Gaps = 15/240 (6%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++  D RIIEIG VEL+    T R +  ++ P  RK    A+++HGI
Sbjct: 1   MRQIVLDTETTGLETSQDHRIIEIGCVELVGRKLTGRHYHQYVNPQ-RKVDVGAMEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           TD+FL+DKP F ++  EF +F +   A+ + HNA FDVGFIN E+ ++N   +      R
Sbjct: 60  TDQFLEDKPLFETVAREFLEFVD--GADLVIHNAPFDVGFINHEIAKLNGAYQAIESGCR 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IIDTL++AR+KHP  +N+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M  G   +N
Sbjct: 118 IIDTLALARQKHPGQKNNLDALCKRYGVDNSQRDLHGALLDAEILADVYLLMTGGQVNLN 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT--KEELDEHDKTIQTLGK---NAIW 237
              +   D     +  +   I  L +D+     +T  +EE++ H + ++ + K   N +W
Sbjct: 178 ISGQQASD---GGQDNSRSGIRRLAQDRQPLRVVTASREEIERHQQKLEAINKSSGNCLW 234


>gi|294009991|ref|YP_003543451.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S]
 gi|292673321|dbj|BAI94839.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S]
          Length = 230

 Score =  179 bits (453), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 99/239 (41%), Positives = 142/239 (59%), Gaps = 21/239 (8%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTG D +  DR++EIG +ELL+   T RTF  +  P  R     A  +HG+
Sbjct: 1   MREIIFDTETTGFDPASGDRLVEIGCIELLNRVPTGRTFHAYYNPQ-RSMPAAAEAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D FL+DKP FS    E   F   +++  +AHNA+FD GF+N EL+      +  +R+ID
Sbjct: 60  SDSFLRDKPLFSHGVEELLAFL--EDSHLVAHNARFDFGFLNHELRLCGLPEVSMARMID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T++IAR+ HP +++ L++LC RYGI  SHR KHGALLD+ LL+ +YI+ + GG QI  G 
Sbjct: 118 TVAIARQLHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAQLYIE-LTGGRQIGLGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLK-------RDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                   +EE+K V N+ L         R   +F   + EEL+ H   + TL K  +W
Sbjct: 177 A-------QEEEKRVANMELAAEVAVRPVRPARVFA-ASAEELERHAAFVATLEK-PLW 226


>gi|254485580|ref|ZP_05098785.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101]
 gi|214042449|gb|EEB83087.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101]
          Length = 228

 Score =  179 bits (453), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 93/232 (40%), Positives = 148/232 (63%), Gaps = 8/232 (3%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D ++ DRI+EIGAVEL+ +  T +T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHMATGKTYHQYINPE-RGMPDEAFQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I  +F DF    +++ I HNA FD+ F+NAEL+ +    +  ++ +D
Sbjct: 60  GDDFLRDKPKFAQIGQDFLDFIG--DSKLIIHNAAFDIKFLNAELKWMGLPQIPWAQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR++ P S   L++LC+R+ I  + R+ HGALLDS +L++VY++ ++GG Q +FG 
Sbjct: 118 TLAIARKRFPGSPASLDALCRRFNIDNTSRTLHGALLDSEILAEVYLE-LIGGRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                R   +E  T  + +   R  PL +RI+++E   H + +  LG  A+W
Sbjct: 177 SNQPQR---KEGDTSVDWTPKPRPNPLPSRISQDEAAAHAEFVSKLGDGAVW 225


>gi|315497200|ref|YP_004086004.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB
           48]
 gi|315415212|gb|ADU11853.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB
           48]
          Length = 232

 Score =  178 bits (452), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 97/233 (41%), Positives = 140/233 (60%), Gaps = 8/233 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D K   R+IE+G +E+ D   T +TF  +  P  R   P+A+++HGI
Sbjct: 1   MRQIVLDTETTGIDPKKGHRLIEVGCIEIEDLLPTGKTFHHYFNPE-RLIEPDAIRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE + DKP F+ +   F DF    +A  IAHNA FD GFIN EL+R+  DP DP R +D
Sbjct: 60  TDEMVADKPKFADLAQAFIDFVG--DAPIIAHNASFDRGFINMELERLGLDPTDPDRWVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR K P   N L++LCKRY I+++ R KHGALLD+ LL+ VY++ + GG +     
Sbjct: 118 TLELARYKFPGMANSLDALCKRYNISLAERDKHGALLDARLLAGVYLE-LSGGKERGLDL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK-TIQTLGKNAIW 237
           K +      E+   +  ++  +R +PL + I  EE + H    ++ L    +W
Sbjct: 177 KMH--GMVSEDGTEIRVMNHGQRPRPLPSHIHPEEAEAHKAFCLKYLKDQNMW 227


>gi|92115747|ref|YP_575476.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14]
 gi|91798641|gb|ABE61016.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14]
          Length = 239

 Score =  178 bits (452), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 97/240 (40%), Positives = 139/240 (57%), Gaps = 13/240 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV DIETTGLD  + DR++EIG VE+ +   T +TF  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDIETTGLDPLRGDRVVEIGCVEIFNRMPTGQTFHRYINPE-RDMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL +KP F+ I  +F +F    +A  + HNA FD+ FINAEL R+    +   R++D
Sbjct: 60  SSEFLAEKPLFTHIVDDFLEFIG--DAPLVIHNASFDISFINAELDRLKMRTIGRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI  ++G  Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQPQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
                R      +T   + + +R +  PL  R+T  +   H   + TLG+ AIW  +  +
Sbjct: 177 AETASR------RTGGTLDMPRRQRTVPLAPRVTDADRIAHRDFVATLGEKAIWKEFAGT 230


>gi|33591629|ref|NP_879273.1| DNA polymerase III subunit epsilon [Bordetella pertussis Tohama I]
 gi|33598340|ref|NP_885983.1| DNA polymerase III subunit epsilon [Bordetella parapertussis 12822]
 gi|33603250|ref|NP_890810.1| DNA polymerase III subunit epsilon [Bordetella bronchiseptica RB50]
 gi|33566898|emb|CAE39114.1| DNA polymerase III, epsilon chain [Bordetella parapertussis]
 gi|33571272|emb|CAE44737.1| DNA polymerase III, epsilon chain [Bordetella pertussis Tohama I]
 gi|33577374|emb|CAE34639.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica RB50]
 gi|332381049|gb|AEE65896.1| DNA polymerase III subunit epsilon [Bordetella pertussis CS]
          Length = 244

 Score =  178 bits (452), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 102/232 (43%), Positives = 141/232 (60%), Gaps = 15/232 (6%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTGLD ++  RI+EIG VE+++   T     ++L P+ R + PEAL +HG+
Sbjct: 1   MRQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNPD-RDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ +  +F  F    +AE IAHNA FDV F NAELQRI +DPL+     I
Sbjct: 60  TTEFLADKPRFAEVAEQFLAFI--ADAELIAHNAAFDVKFFNAELQRIGRDPLNTHCENI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +D+L  AR  HP  RN L++LC RYGI+ +HR+ HGALLDS LL++V++ M  G   +  
Sbjct: 118 VDSLLHARSLHPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI--TKEELDEHDKTIQTLGK 233
                +D+        V    L K D  + T +  ++ EL EH   +Q L K
Sbjct: 178 DV---DDQGANANGALV----LGKFDASVLTVLAASEAELAEHAAYLQALDK 222


>gi|310817168|ref|YP_003965132.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare
           Y25]
 gi|308755903|gb|ADO43832.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare
           Y25]
          Length = 224

 Score =  178 bits (451), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 95/229 (41%), Positives = 142/229 (62%), Gaps = 8/229 (3%)

Query: 12  FDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDEF 69
            D ETTG + +  DRI+EIG VELL++  T RT+  ++ P  +++ PE A K+HG++ EF
Sbjct: 1   MDTETTGFEPETGDRIVEIGCVELLNHLPTGRTYHQYINP--QRDMPEDAFKVHGLSAEF 58

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L DKP F+ +  +F DF  + N   + HNA FDV F+NAEL  + K  + P+R +DTL I
Sbjct: 59  LSDKPLFAQVAQDFLDFIGDAN--LVIHNAAFDVKFLNAELGWVKKPLIAPARAVDTLLI 116

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           ARR+ P ++N L++LC+R+GI  S R+ HGALLDS +L++VY++ ++GG Q +FG     
Sbjct: 117 ARRRFPGAQNSLDALCRRFGIDNSKRTLHGALLDSEILAEVYLE-LIGGRQPDFGLSAAA 175

Query: 190 DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
                +   T        R  PL TR+T++E   H   ++ LG  A W+
Sbjct: 176 ST-PAQGNVTRSAWRPQPRPNPLPTRLTEDEAKAHAAFVEKLGPEAAWN 223


>gi|85709813|ref|ZP_01040878.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1]
 gi|85688523|gb|EAQ28527.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1]
          Length = 234

 Score =  178 bits (451), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 98/240 (40%), Positives = 145/240 (60%), Gaps = 13/240 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++FD ETTGLD K  DR++EIG VE++   +T R++  +  P  R     A  +HG+
Sbjct: 1   MREVIFDTETTGLDPKTGDRMVEIGCVEMVGRVETGRSYHAYYNPE-RDMPSAAEAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  FL+ KP FS    E  +F    +A  +AHNA FD GF+NAEL+RI ++ +   R++D
Sbjct: 60  SISFLETKPRFSETADELLEFLG--DAPLVAHNAGFDFGFLNAELERIGRESIAMDRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T++IAR+KHP ++  L++LC RYGI  SHR KHGALLD+ LL+ VY++ + GG QI    
Sbjct: 118 TVAIARKKHPGAKLSLDALCTRYGIDRSHRVKHGALLDAELLAQVYVE-LTGGRQIGLEL 176

Query: 186 K--TNEDRFFKEEKKTVPNISLLKRDKPLFT----RITKEELDEHDKTIQTLGKNAIWDR 239
              T ED     E K V  +   + D+P         ++ EL  H + ++ + K+AIW R
Sbjct: 177 AADTVEDPHAAAE-KVVETVIGRRSDQPFREPRPHAASENELARHREFVEGI-KDAIWAR 234


>gi|126667360|ref|ZP_01738332.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
 gi|126628116|gb|EAZ98741.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
          Length = 236

 Score =  177 bits (450), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 127/175 (72%), Gaps = 7/175 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D ++  RIIEIG VEL++ + T R + V++ P GR+   EA+ +HGI
Sbjct: 1   MRQIVLDTETTGIDPNEGHRIIEIGCVELVERTLTGRNYHVYVNP-GREVEAEAVAIHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRI 123
           T+EFL DKP F+ +  EF++F   + AE + HNA FDVGF++AE  R++  +   +   I
Sbjct: 60  TNEFLADKPLFAVVADEFFEFI--RGAELVIHNAAFDVGFMDAEFGRLDGGRKTAEHCGI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +DTL+IAR++HP  +N+LN+LCKRYG+  S+R  HGALLD+ +L+DVY+ ++ GG
Sbjct: 118 VDTLAIARKRHPGQKNNLNALCKRYGVDNSNRELHGALLDAEILADVYL-LLTGG 171


>gi|254448791|ref|ZP_05062248.1| DNA polymerase III, epsilon subunit [gamma proteobacterium
           HTCC5015]
 gi|198261632|gb|EDY85920.1| DNA polymerase III, epsilon subunit [gamma proteobacterium
           HTCC5015]
          Length = 239

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/244 (43%), Positives = 150/244 (61%), Gaps = 19/244 (7%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTGLD K   RIIEIG VEL +   T     ++L P+ R+    A+++H I
Sbjct: 1   MRQVVLDTETTGLDPKQGHRIIEIGCVELENRRLTGNKLHMYLQPD-REIDDGAIEVHQI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           T+EFL DKP F  +  EF DF   + +E + HNA FDVGFI++EL  ++++     D   
Sbjct: 60  TNEFLADKPRFGDVVDEFLDFV--KGSELVIHNAAFDVGFIDSELNLLDRNLGQTKDYCG 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL++AR+ HP  RNDL+SLCKRY I  SHR+ HGALLD+ +L+DVY+ MM GG Q++
Sbjct: 118 VLDTLAMARKMHPGKRNDLDSLCKRYDINNSHRTLHGALLDAEILADVYL-MMTGG-QVS 175

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK--EELDEHDKTIQTL-GKNA---- 235
            GF   + +    E+     IS   +D+     IT   EE + H+K +  L GK+     
Sbjct: 176 LGFDAKQKQEADAEQGGAHRIS---QDRAPLQVITASPEEQERHEKLLANLRGKDGDQPC 232

Query: 236 IWDR 239
           +WD+
Sbjct: 233 LWDQ 236


>gi|312115401|ref|YP_004012997.1| DNA polymerase III subunit epsilon [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220530|gb|ADP71898.1| DNA polymerase III, epsilon subunit [Rhodomicrobium vannielii ATCC
           17100]
          Length = 241

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/238 (43%), Positives = 144/238 (60%), Gaps = 14/238 (5%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTGLD K+  RIIE+  VEL +Y  T   +  +  P  R    EA  +HG+
Sbjct: 1   MRELVLDTETTGLDPKSGHRIIELACVELHNYIPTGVFWHWYFNPE-RSVPREATAIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRII 124
           TD FL DKP F +I  +       + A  I HNA FDVGF+N E Q++  + P+   R+ 
Sbjct: 60  TDGFLADKPLFGAIAPDIVKVL--EGARLIIHNASFDVGFLNFEFQKLGYQQPISMERVT 117

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--IN 182
           DTL++ARRKHP S N+L++LC+RYGI  S R+KHGALLDS LL+DVY++ ++G  Q  ++
Sbjct: 118 DTLALARRKHPGSPNNLDALCRRYGIDNSTRTKHGALLDSELLADVYLR-LIGAEQAGLD 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            G ++ E     +        ++  R KPL +R+T EE   H   + TLG  AIW RY
Sbjct: 177 LGARSAEVTVAGQAA------AVQVRLKPLPSRLTAEEAAAHAAFVATLGDKAIWKRY 228


>gi|307824649|ref|ZP_07654873.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum
           SV96]
 gi|307734303|gb|EFO05156.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum
           SV96]
          Length = 241

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/241 (41%), Positives = 143/241 (59%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTGL+  +  RIIEIG VEL++   T + F  ++ P  R     A+++HGIT
Sbjct: 9   RLVVLDTETTGLNPQEGHRIIEIGCVELVNRRLTGKRFHTYINPE-RIIDDGAIEVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSRI 123
           ++FL+DKP F+ +  +F  F   Q+AE + HNA FDVGFIN E  R+N       D S++
Sbjct: 68  NQFLEDKPCFADVVKDFIAFI--QDAELVIHNAPFDVGFINYEFSRLNSQTGTVTDYSKV 125

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL+ AR+KHP  RN L++LCKRYGI  SHR  HGALLD+ +L+DV++ M  G S +  
Sbjct: 126 FDTLTYARKKHPGQRNSLDALCKRYGIDNSHRDLHGALLDAEILADVFLLMTGGQSSL-- 183

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDK---TIQTLGKNAIWD 238
               +E +  +E       I  L  D+P     R T+EEL+ H +    I+  G   IW+
Sbjct: 184 ---LDEGQGRQEGAAVNREIKHLSADRPALKIIRCTEEELNAHQQRLEAIEKAGGGCIWN 240

Query: 239 R 239
           +
Sbjct: 241 Q 241


>gi|161170263|gb|ABX59233.1| polymerase III epsilon subunit uncultured proteobacterium
           [uncultured marine bacterium EB000_55B11]
 gi|297183792|gb|ADI19915.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 230

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/234 (43%), Positives = 148/234 (63%), Gaps = 7/234 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV+D ETTG D    DRI+EIGAVEL  +  T R +  ++ P  R   P A ++HG+
Sbjct: 1   MREIVWDTETTGFDPFAGDRIVEIGAVELNQHLPTGRVYHQYINPE-RDMPPGAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FLKD P FS+I  +F DF  +  A  IAHNAKFD+ FINAEL+  N   +  ++ +D
Sbjct: 60  SIDFLKDFPVFSNIARDFIDFVGD--ATLIAHNAKFDMKFINAELKNANLPQVPLNQSLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IAR+K P ++N L++LC+R+ I  S R KHGALLDS +L++VY++ +VGG Q +F  
Sbjct: 118 TLEIARKKFPGAQNSLDALCRRFNIDNSSRQKHGALLDSEILAEVYLE-LVGGRQPDFSL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                   K E  +  + + L R K L + +T  E   H+  I++LG +A+W++
Sbjct: 177 SLVGQS--KLESTSDSSYAALSRPKKLNSLVTDVEKKAHNDFIKSLGTSAVWNK 228


>gi|83645320|ref|YP_433755.1| DNA polymerase III subunit epsilon [Hahella chejuensis KCTC 2396]
 gi|83633363|gb|ABC29330.1| DNA polymerase III, epsilon subunit [Hahella chejuensis KCTC 2396]
          Length = 240

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/239 (42%), Positives = 144/239 (60%), Gaps = 16/239 (6%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S+  RIIEIG VE++D S T   + V++ P  R+    A ++HGI
Sbjct: 1   MRQIVLDTETTGLETSQGHRIIEIGCVEVIDRSLTGNHYHVYINPE-REVDAGAFEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL----DPS 121
           ++EFL DKP F  +  +F DF +   AE + HNA FDVGFI+ E   +   P     D  
Sbjct: 60  SNEFLADKPKFKQVAQDFLDFIS--GAELVIHNAAFDVGFIDYEFSLLGA-PFGKVSDYC 116

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR+KHP  +N+L++LCKRYGI  SHR  HGALLDS +L+DVY+ M  G + +
Sbjct: 117 SVVDTLMMARKKHPGQKNNLDALCKRYGIDNSHRDLHGALLDSEILADVYLAMTGGQTSL 176

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IW 237
           +     +ED   +EE   V  I+  +R      R ++ EL EH + +  + K A   +W
Sbjct: 177 SL---HSEDGGTEEEASEVRRIN-TQRPSLRVIRASEAELAEHARQLDAVEKAAGFSLW 231


>gi|217970689|ref|YP_002355923.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|217508016|gb|ACK55027.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 239

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/231 (41%), Positives = 143/231 (61%), Gaps = 13/231 (5%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD +N DR+IEIG VELLD S T R + V++ P GR    EA+ +HGI
Sbjct: 1   MRQIVLDTETTGLDWRNGDRVIEIGCVELLDRSLTGRHYHVYINP-GRGIDAEAVAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T+EFL DKP F+ I ++F DF   ++AE + HNA FDVGF++AEL+R+ +  L    + +
Sbjct: 60  TEEFLADKPKFADIVADFEDFV--RDAELVIHNASFDVGFLDAELERLGRAKLGALCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +A+ ++P  +  L++LC RY I  +HR  HGALLD+ LL++V++ M  G   +  
Sbjct: 118 VDTLKLAKEQNPGKKASLDALCDRYEIDNAHRELHGALLDAELLAEVFLAMTRGQESLMI 177

Query: 184 GFKTNEDRFFKE-EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           G   +E+   +E + +  P +    R      R + +E   HD  +  + K
Sbjct: 178 GL--DEEAAPRESDSEGTPVLRAAVR----VLRASADECAAHDAALADIAK 222


>gi|84684641|ref|ZP_01012542.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Maritimibacter alkaliphilus HTCC2654]
 gi|84667620|gb|EAQ14089.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Rhodobacterales bacterium HTCC2654]
          Length = 230

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/239 (41%), Positives = 148/239 (61%), Gaps = 17/239 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64
           MR+IV D ETTG D K  DR++EIGAVEL ++  T RT+  ++ P  +++ PE A  +HG
Sbjct: 1   MREIVLDTETTGFDPKTGDRMVEIGAVELFNHMPTGRTYHQYINP--QRDMPEGAFAVHG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +++EFLKD P F+ I   F +F    +A+ + HNA FDV F+NAEL    +  +   + I
Sbjct: 59  LSEEFLKDYPVFADIADAFLEFIG--DAKLVIHNASFDVPFLNAELGWCKRRQIPMDQSI 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ---- 180
           DTL IAR+K P + N L++LC+R+GI  SHR+ HGALLDS +L++VY++ ++GG Q    
Sbjct: 117 DTLLIARKKFPGAGNSLDALCRRFGIDNSHRTLHGALLDSEILAEVYLE-LIGGRQPDLV 175

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
           +  G     D    E+ +  P      R + L +RIT+EE   H   ++ LG +A+W +
Sbjct: 176 LGGGGSQTSDTTQNEDWRPRP------RPEALPSRITEEERAAHQAFVEKLGASALWSK 228


>gi|326796075|ref|YP_004313895.1| DNA polymerase III subunit epsilon [Marinomonas mediterranea MMB-1]
 gi|326546839|gb|ADZ92059.1| DNA polymerase III, epsilon subunit [Marinomonas mediterranea
           MMB-1]
          Length = 235

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/239 (42%), Positives = 143/239 (59%), Gaps = 14/239 (5%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTG+D K   RIIEIG VE++    T R F V++ P+ R+   EA ++HGI
Sbjct: 1   MRQVVLDTETTGIDPKQGHRIIEIGCVEMIGRKLTKRHFHVYINPD-REVEEEAFQVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRI 123
           ++EFL DKP F  I  EF DF   + AE I HNA FDVGF++ E   +   P   D   I
Sbjct: 60  SNEFLADKPRFHEIAQEFLDFI--RGAELIIHNAPFDVGFMDHEFSMLGNFPKTRDVCEI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L  AR+KHP ++N+L++LC+RYGI  SHR  HGALLDS +L+DVY+ +M GG Q + 
Sbjct: 118 FDSLVFARKKHPGAKNNLDALCRRYGIDNSHRELHGALLDSEILADVYL-LMTGG-QTSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDKTIQTLGK---NAIW 237
           G   N D     +   V  I  L  D+P+    R  + E+  H++ +  + K    ++W
Sbjct: 176 GLSMN-DGSEGGDSDNVGEIRRLSPDRPMLKVLRANETEMAAHEERLDLIDKKSGQSLW 233


>gi|83950782|ref|ZP_00959515.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius nubinhibens ISM]
 gi|83838681|gb|EAP77977.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius nubinhibens ISM]
          Length = 231

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/235 (41%), Positives = 140/235 (59%), Gaps = 7/235 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVEL ++  T  T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPHSGDRIVEIGAVELFNHMPTGETYHQYINPE-RSMPQEAFQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F  I   F DF    +A+ I HNA FD+ F+NAEL  +    +   + ID
Sbjct: 60  GDDFLRDKPVFKRIGQAFLDFIG--DAKLIIHNAAFDMKFLNAELGWMGLPQIPWEQAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IARR+ P S   L++LC+R+ I  S R+ HGALLDS +L++VY++ ++GG Q +F  
Sbjct: 118 TLEIARRRFPGSPASLDALCRRFNIDNSSRTLHGALLDSEILAEVYLE-LIGGRQPDFSL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           K  E     E  + + N     R  PL +R+T+ E + H   +  +G  AIW +Y
Sbjct: 177 KVVEKA--PEPGEDMGNWRPKPRPTPLPSRLTEAEKNAHATFVGGMGDTAIWRKY 229


>gi|328474397|gb|EGF45202.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
          Length = 240

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/241 (41%), Positives = 148/241 (61%), Gaps = 24/241 (9%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V++ P+ R+  PEA++
Sbjct: 11  RIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPEAIQ 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118
           +HGITDEFL DKP ++SI  EF DF   + AE +AHNA FD GF++ E +++  DP    
Sbjct: 70  VHGITDEFLVDKPEYASIHQEFLDFI--KGAELVAHNASFDTGFMDYEFEKL--DPTIGK 125

Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ +M 
Sbjct: 126 TDDYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYL-LMT 184

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236
           GG Q +  F  N+     E  + +     LK       R T +EL+ H K ++ L  + I
Sbjct: 185 GG-QTSLEFNANKQEGGVETIRRIEGRKALK-----VLRATADELEAHQKRLE-LVNDCI 237

Query: 237 W 237
           W
Sbjct: 238 W 238


>gi|119385539|ref|YP_916595.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119375306|gb|ABL70899.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 239

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/243 (40%), Positives = 147/243 (60%), Gaps = 9/243 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVEL+++  T RTF V++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPDTGDRIVEIGAVELMNHLPTGRTFHVYINPE-RPMPQEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I ++F  F  + +A+ + HNA FD+ F+NAEL+ +    +  SR +D
Sbjct: 60  GDDFLRDKPKFAEIAADFVAFIGD-DAKLVIHNASFDMKFLNAELRMVGHATMPYSRAVD 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG---GSQIN 182
           TL IAR   P ++N L++LC+R+ I  S+R+ HGALLDS LL++VY+ +  G   G  + 
Sbjct: 119 TLEIARSMFPGAQNSLDALCRRFRIDNSNRTLHGALLDSELLAEVYLALRGGRQPGLVLE 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
            G          + +   P     +R +PL  RIT+ E + H   +  +G+ A+W RY  
Sbjct: 179 SGPMHGGTGTGAQAEGGTPRG---QRPRPLAPRITEAEAEAHAAFVAKMGEKAVWLRYGD 235

Query: 243 SNQ 245
           +N 
Sbjct: 236 ANH 238


>gi|23010300|ref|ZP_00051037.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 236

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 93/241 (38%), Positives = 142/241 (58%), Gaps = 14/241 (5%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+IV D ETTG D+KN DR+IEIG VEL+++ +T   +   + P  R  S  A  +HGI
Sbjct: 2   LREIVLDTETTGTDAKNGDRLIEIGCVELINHVQTGAYYHQLINPQ-RPVSEGAFAVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII- 124
           +D  L DKP F+ +   F  F    +A  + HNA FDVGF+N E  ++   P  P  I+ 
Sbjct: 61  SDAMLADKPVFADVVDAFVAFCG--DARLVIHNAPFDVGFLNMEFAKLG--PAAPPLIVL 116

Query: 125 ----DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
               DTL +ARRKHP + N+L++LC RYG+  + R KHGALLD+ +L++VY++++ GG Q
Sbjct: 117 EDVVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQ 175

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            + G    E       +    +  +  R   + +R+T++E   H   +++LG NA+W  Y
Sbjct: 176 TSLGLSIAEPAGSVAVEAVADSGPIAPR--AMRSRLTEDERLRHVSFVESLGTNAVWRDY 233

Query: 241 I 241
           +
Sbjct: 234 L 234


>gi|70730658|ref|YP_260399.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf-5]
 gi|68344957|gb|AAY92563.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens Pf-5]
          Length = 249

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/249 (39%), Positives = 140/249 (56%), Gaps = 14/249 (5%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+  +   RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 4   RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPSR 122
           +EFL  KP F+ +  EF+DF   Q A+ I HNA FDVGFIN E   + +    D      
Sbjct: 63  NEFLVGKPRFAEVADEFFDFI--QGAQLIIHNAAFDVGFINNEFALMGQHERADITQHCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++
Sbjct: 121 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLS 180

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKN----AI 236
                ++     E       I  L  D+P     + +  EL EH   ++ + K+    A+
Sbjct: 181 LAGNASDGNGSGEGAGQASEIRRLPADRPRGRIIQASDAELAEHQVRLEIIAKSAGAPAL 240

Query: 237 WDRYISSNQ 245
           W + + + Q
Sbjct: 241 WTQLLETQQ 249


>gi|300024773|ref|YP_003757384.1| DNA polymerase III subunit epsilon [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526594|gb|ADJ25063.1| DNA polymerase III, epsilon subunit [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 237

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 99/236 (41%), Positives = 149/236 (63%), Gaps = 7/236 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHG 64
           MR+IV D ETTGLD K  DR+IEIG +E+++   T   F  F+ P   +N P EA  +HG
Sbjct: 1   MREIVLDTETTGLDPKTGDRLIEIGGIEIINRIPTGVEFHRFINPE--RNVPMEAQNVHG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ EFL  KP F  ++ +F  F  +     + HNA+FDV F+N EL  + + PL   R++
Sbjct: 59  ISTEFLIGKPLFREVYRDFLAFIGDDI--LVIHNAQFDVNFLNHELGLVGEKPLSFDRVV 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++ARR+HP+  N L++LCKRYGI  S R+KHGA++DS LL++VY++++ G  Q  FG
Sbjct: 117 DTLALARRRHPAGPNSLDALCKRYGIDTSQRTKHGAIVDSLLLAEVYVELL-GERQATFG 175

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            +T        E++     +  +R +PL +R+T+ +L  H   I+ +G  AIW+R+
Sbjct: 176 LQTIGSGAATSERRNGKRAAAKQRPEPLPSRLTEADLVAHRSFIEKMGAKAIWNRF 231


>gi|28899066|ref|NP_798671.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837020|ref|ZP_01989687.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|260361704|ref|ZP_05774731.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|260876852|ref|ZP_05889207.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260897333|ref|ZP_05905829.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|260899809|ref|ZP_05908204.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|28807290|dbj|BAC60555.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749793|gb|EDM60538.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|308088283|gb|EFO37978.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308091367|gb|EFO41062.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308107229|gb|EFO44769.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308113581|gb|EFO51121.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
          Length = 240

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 101/241 (41%), Positives = 148/241 (61%), Gaps = 24/241 (9%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V++ P+ R+  PEA++
Sbjct: 11  RIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPEAIQ 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118
           +HGITDEFL DKP ++SI  EF DF   + AE +AHNA FD GF++ E +++  DP    
Sbjct: 70  VHGITDEFLVDKPEYASIHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEKL--DPTIGK 125

Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ +M 
Sbjct: 126 TDDYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYL-LMT 184

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236
           GG Q +  F  N+     E  + +     LK       R T +EL+ H K ++ L  + I
Sbjct: 185 GG-QTSLEFNANKQEGGVETIRRIEGRKALK-----VLRATADELEAHQKRLE-LVNDCI 237

Query: 237 W 237
           W
Sbjct: 238 W 238


>gi|114762190|ref|ZP_01441658.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Pelagibaca bermudensis HTCC2601]
 gi|114545214|gb|EAU48217.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Roseovarius sp. HTCC2601]
          Length = 229

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 101/235 (42%), Positives = 143/235 (60%), Gaps = 9/235 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + +  DRI+EIGAVEL ++  T  T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFEPETGDRIVEIGAVELYNHVPTGETYHQYINPE-RSMPQEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-I 124
            D+FL+DKP F+ I  EF +F    +++ + HNA FDV F+NAEL   +K PL P    +
Sbjct: 60  GDDFLRDKPLFAQIVDEFLEFIG--DSKLVIHNATFDVKFLNAELG-WSKRPLLPKDCAV 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL+IARRK P S   L++LC+R+GI  S R+ HGALLDS +L+DVY++ ++GG Q +  
Sbjct: 117 DTLAIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILADVYLE-LIGGKQPDLV 175

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                 R          N    +R +PL  RIT EE   H   ++ LG+ A+W R
Sbjct: 176 LSPV--RQGGGSDGGDDNWRPQRRPEPLSPRITDEEKAAHAAFVEKLGEAALWSR 228


>gi|154245775|ref|YP_001416733.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
 gi|154159860|gb|ABS67076.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
          Length = 240

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 97/235 (41%), Positives = 141/235 (60%), Gaps = 7/235 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR++EIG VE+++   T   F V++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLEAYGGDRLVEIGCVEMVNRILTGTVFHVYINPE-RDMPVEAFNVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F  +  EF +F  E     + HNA FD+GF+NAEL+R+ +  +   R++D
Sbjct: 60  SAEFLSDKPKFKDVADEFLNFIAEDT--LVIHNAAFDIGFLNAELERLGRPTIARDRVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++ARRKHP   N L+ L  RYGI  S R KHGALLD+ LL++VY +++ GG Q +   
Sbjct: 118 TLALARRKHPGGGNRLDDLMNRYGIDSSRRVKHGALLDAELLAEVYGELL-GGKQASL-I 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
              ED   +  +  V   +   R  PL  R+T  E + H   I ++G+ A+W +Y
Sbjct: 176 GLVEDT-SEAPRLVVAAAAAHPRPVPLAPRLTAAEAEAHAAFIASMGEKALWLKY 229


>gi|99082698|ref|YP_614852.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040]
 gi|99038978|gb|ABF65590.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040]
          Length = 243

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 144/245 (58%), Gaps = 21/245 (8%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVELL++  T  TF V++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPQ-RSMPHEAFGVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             KDKP F+ +   F DF   ++++ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQPPAPGQVILKDKPLFAEVGQAFLDFV--RDSKMVIHNASFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +N   L   + IDTL++AR++ P S   L++LC+R+GI  S+R+ HGALLDS +L+DVY+
Sbjct: 118 MNLPQLPMDQAIDTLAMARKRFPGSPATLDALCRRFGIDNSNRTLHGALLDSEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           + ++GG Q +FG           +     N     R+ PL +R+T EE   HD+ +  LG
Sbjct: 178 E-LIGGRQPDFGLSAQSS---GGQNAVDTNWRPAPRETPLPSRLTAEEKAAHDEFVGKLG 233

Query: 233 KNAIW 237
           ++A+W
Sbjct: 234 EDALW 238


>gi|159045988|ref|YP_001534782.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
 gi|157913748|gb|ABV95181.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
          Length = 230

 Score =  175 bits (443), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 93/234 (39%), Positives = 144/234 (61%), Gaps = 11/234 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + S+ DR++EIG VEL ++  T R +  ++ P  R     A ++HG+
Sbjct: 1   MREIVLDTETTGFEPSEGDRLVEIGGVELFNHVPTGRVYHQYINPQ-RSMPQSAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL DKP F+ +   F DF    +A+ + HNA FD+ F+NAEL  + K  L   + ID
Sbjct: 60  GDDFLADKPLFAEVAEAFLDFIG--DAKLVIHNAAFDMKFLNAELGWLGKPLLPMEQAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IARRK P S   L++LC+R+G+  S R KHGALLDS +L++VY++ ++GG Q     
Sbjct: 118 TLAIARRKFPGSPASLDALCRRFGVDNSAREKHGALLDSEILAEVYLE-LIGGQQPGLEL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKNAIW 237
            + +        + V N  L  R +  PL +R++++E   H   +++LG++A+W
Sbjct: 177 SSVQ----TPSTQNVDNGHLRARPRPAPLPSRVSEKEKAAHAAFVESLGQSALW 226


>gi|110677834|ref|YP_680841.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh
           114]
 gi|109453950|gb|ABG30155.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh
           114]
          Length = 228

 Score =  175 bits (443), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 98/232 (42%), Positives = 144/232 (62%), Gaps = 8/232 (3%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D ++ DRI+EIGAVEL+ +  T RT+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGRTYHQYINPE-RSMPEEAFQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ +   F DF    +A+ + HNA FD+ F+NAEL  IN   +   + ID
Sbjct: 60  GDDFLRDKPKFAEVGQAFLDFIG--DAKLVIHNAAFDIKFLNAELGWINLPKIPWEQAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IAR++ P S   L++LC+R+GI  + R+ HGALLDS +L++VY++ ++GG Q +FG 
Sbjct: 118 TLDIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILAEVYLE-LIGGRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                   K    T  + +   R  PL +RIT+EE   H   +  LG +A+W
Sbjct: 177 SNIPQ---KSAGDTSVDWTPRPRPTPLPSRITEEEAAAHADFVAKLGDDAVW 225


>gi|153840553|ref|ZP_01993220.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149745784|gb|EDM56914.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 229

 Score =  175 bits (443), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 99/239 (41%), Positives = 146/239 (61%), Gaps = 24/239 (10%)

Query: 10  IVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D ETTG++ +        RIIEIGAVE+++   T R F V++ P+ R+  PEA+++H
Sbjct: 2   VVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPEAIQVH 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL----- 118
           GITDEFL DKP ++SI  EF DF   + AE +AHNA FD GF++ E +++  DP+     
Sbjct: 61  GITDEFLVDKPEYASIHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEKL--DPIIGKTD 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M   G
Sbjct: 117 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMT--G 174

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            Q +  F  N+     E  + +     LK       R T +EL+ H K ++ L  + IW
Sbjct: 175 GQTSLEFNANKQEGGVETIRRIEGRKALK-----VLRATADELEAHQKRLE-LVNDCIW 227


>gi|114769767|ref|ZP_01447377.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [alpha proteobacterium HTCC2255]
 gi|114549472|gb|EAU52354.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [alpha proteobacterium HTCC2255]
          Length = 230

 Score =  174 bits (442), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 101/234 (43%), Positives = 147/234 (62%), Gaps = 7/234 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV+D ETTG D    DRI+EIGAVEL  +  T R +  ++ P  R   P A ++HG+
Sbjct: 1   MREIVWDTETTGFDPFAGDRIVEIGAVELNQHLPTGRVYHQYINPE-RDMPPGAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FLKD P FS+I  +F DF  +  A  IAHNAKFD+ FINAEL+  N   +  ++ +D
Sbjct: 60  SIDFLKDFPVFSNIARDFIDFVGD--ATLIAHNAKFDMKFINAELKNANLPQVPLNQSLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IAR+K P ++N L++LC+R+ I  S R KHGALLDS +L++VY++ +VGG Q +F  
Sbjct: 118 TLEIARKKFPGAQNSLDALCRRFNIDNSSRQKHGALLDSEILAEVYLE-LVGGRQPDFSL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                   K E  +  + + L R K L + +T  E   H+  I++L  +AIW++
Sbjct: 177 SLVGQS--KLESTSDSSYAALSRPKKLNSLVTDVEKKAHNDFIKSLCASAIWNK 228


>gi|120554453|ref|YP_958804.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
 gi|120324302|gb|ABM18617.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
          Length = 236

 Score =  174 bits (442), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 95/239 (39%), Positives = 147/239 (61%), Gaps = 14/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D ++  RIIEIG VE+++   T R + V++ P  R+   EA+ +HGI
Sbjct: 1   MRQIVLDTETTGIDPNEGHRIIEIGCVEVIERELTGRNYHVYINPE-REVEAEAITVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRI 123
           T+EFL DKP F+ +  EF++F   + AE + HNA FDVGF+++E  R+   +   D   I
Sbjct: 60  TNEFLADKPKFAEVADEFFEFI--KGAELVIHNAAFDVGFMDSEFARLKPVRKTADHCGI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +D+L+IAR+KHP  +N+L++LCKRYG+  S+R  HGALLD+ +L+DVY+ M  G + ++ 
Sbjct: 118 VDSLAIARKKHPGQKNNLDALCKRYGVDNSNRDLHGALLDAEILADVYLLMTGGQTALSL 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDR 239
              + +    +     +  IS  +R      R T +E   HD+ +  + K A   +W R
Sbjct: 178 DAGSGD----EGGDGGIRRIS-GERAPLAVVRATSDEASAHDEFMAMMEKQAGETVWSR 231


>gi|152995731|ref|YP_001340566.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1]
 gi|150836655|gb|ABR70631.1| DNA polymerase III, epsilon subunit [Marinomonas sp. MWYL1]
          Length = 237

 Score =  174 bits (442), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 102/239 (42%), Positives = 146/239 (61%), Gaps = 14/239 (5%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTG+D K   RIIEIG VE++    TNR F V++ P+ R+   EA ++HGI
Sbjct: 1   MRQVVLDTETTGIDPKQGHRIIEIGCVEMIGRKLTNRHFHVYINPD-REVEEEAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRI 123
           ++EFL DKP F  I  EF+DF   + AE I HNA FD+GF++ E  RI   P   +   +
Sbjct: 60  SNEFLADKPRFHEIAQEFFDFI--KGAELIIHNAPFDIGFMDHEFARIGGYPKTAEVCGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L  AR+KHP  +N+L+ LC+RYGI  SHR  HGALLDS +L+DVY+ +M GG Q + 
Sbjct: 118 FDSLVYARKKHPGQKNNLDILCRRYGIDNSHRELHGALLDSEILADVYL-LMTGG-QTSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDKTIQTLGK---NAIW 237
           G  ++ +    +E+  V  I     D+P     R + EEL  H++ +  + K    ++W
Sbjct: 176 GLASSSES-ESKEEGGVEEIRRFSADRPALKVIRASSEELKLHEERLDLIDKKSGQSLW 233


>gi|254480788|ref|ZP_05094035.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2148]
 gi|214039371|gb|EEB80031.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2148]
          Length = 244

 Score =  174 bits (442), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 96/239 (40%), Positives = 141/239 (58%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S+  RIIEIG VEL     T   +  ++ PN R+    A+++HGI
Sbjct: 1   MRQIVLDTETTGLEVSQGHRIIEIGCVELDTRRLTGNHYHQYINPN-REIDQGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122
           T+EFLKDKPSF  +F EF +F   + +E + HNA FD+GF+N+E+QR+  D     D  +
Sbjct: 60  TNEFLKDKPSFERVFREFLEFV--EGSELVIHNAPFDLGFLNSEIQRLEPDAPRLEDRCK 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR KHP  RN L++LC+RYG+  S R  HGALLDS +L+DVY+ M  G + + 
Sbjct: 118 IVDTLVMARGKHPGQRNSLDALCQRYGVDNSQRDLHGALLDSEILADVYLLMTGGQTALQ 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237
                +         + +  +   ++  P+    T EEL  H+  ++ +    G   +W
Sbjct: 178 LSDNDSGAESGASRSERIIRLDAGRQALPVIAAST-EELAAHEAQLEAISSASGGKVLW 235


>gi|56479129|ref|YP_160718.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum
           EbN1]
 gi|56315172|emb|CAI09817.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum
           EbN1]
          Length = 239

 Score =  174 bits (441), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 98/236 (41%), Positives = 145/236 (61%), Gaps = 22/236 (9%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD +N DR+IEIG VELL+ + T R + V++ P  R    EA+ +HGI
Sbjct: 1   MRQIVLDTETTGLDWRNGDRVIEIGCVELLNRNLTGRHYHVYINPE-RGIDAEAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T++FL DKP+FS+I +EF DF   ++AE I HNA FDVGF+N EL R+ +  LD   + +
Sbjct: 60  TEDFLADKPTFSAIAAEFEDFI--RDAELIIHNASFDVGFLNHELSRLGRGKLDSLCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +A+ ++P  +  L++LC R+ I  + R+ HGALLD+ LL++VY+ M  G      
Sbjct: 118 IDTLKMAKEQNPGKKASLDALCDRHQIDNASRTLHGALLDAELLAEVYLAMTRG------ 171

Query: 184 GFKTNEDRFFKEEKKTVPNIS-----LLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                ++      ++ VP  +     L+ R      R + EEL EH++ +Q + K 
Sbjct: 172 -----QESLIMVLEEPVPGSAEAGGVLVDRPPLKVLRASGEELAEHERVLQDIAKG 222


>gi|118161395|gb|ABK64077.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum]
          Length = 238

 Score =  174 bits (441), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 102/241 (42%), Positives = 140/241 (58%), Gaps = 23/241 (9%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +  DRI+EIGAVEL +   T   F  ++ P  R +   AL +HG+
Sbjct: 1   MRQIVLDTETTGLNPRTGDRILEIGAVELNNRMLTGNNFHHYINPE-RDSEEGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T EFL DKP F+ I  EF  F     AE I HNA FD+GF+NAE +R+N  P+      +
Sbjct: 60  TTEFLSDKPKFAEIAEEFRAFI--AGAELIIHNAPFDIGFLNAEFKRLNLPPVHEQVHGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A+  HP  RN L++LC RYG++ +HR  HGALLDS LL+DVY+ M  G + ++ 
Sbjct: 118 IDTLVQAKEMHPGKRNSLDALCDRYGVSNAHRKLHGALLDSELLADVYLAMTRGQNSLS- 176

Query: 184 GFKTNEDRFFKEEKKTVPNISLLK---RDKPLFTRITKEELDEHDKTIQTLGKNA----I 236
                     +EE +   + ++L+     + +F   T +EL  H+ TI  L K A    I
Sbjct: 177 ---------MEEEVEVAADGAVLEIVPLAEVIFQSATADELAAHEATIAGLDKAAKGQCI 227

Query: 237 W 237
           W
Sbjct: 228 W 228


>gi|229590113|ref|YP_002872232.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens SBW25]
 gi|229361979|emb|CAY48879.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens SBW25]
          Length = 248

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/237 (42%), Positives = 142/237 (59%), Gaps = 11/237 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R +V D ETTG+  +   RIIEIG VEL+    T R F V+L P+ R +   A+ +HGI
Sbjct: 3   IRSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPD-RDSDEGAIGVHGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSR-- 122
           TDEFLK KP F+ +  EF++F N   A+ I HNA FDVGFIN E   + + D  D S+  
Sbjct: 62  TDEFLKGKPRFAEVADEFFEFIN--GAQLIIHNAAFDVGFINNEFALMGQTDRADISKHC 119

Query: 123 -IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + +
Sbjct: 120 SILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSL 179

Query: 182 NFGFKTNEDRFFKEEKKTVPN-ISLLKRD-KPL-FTRITKEELDEHDKTIQTLGKNA 235
           +     ++     E     P+ I  L  D KP    R ++++L EH   ++ + K+A
Sbjct: 180 SLAGNASDGTGSAEGSGNRPSEIRRLPADRKPTPIIRASEQDLAEHAARLEAIAKSA 236


>gi|77464814|ref|YP_354318.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Rhodobacter sphaeroides 2.4.1]
 gi|221640733|ref|YP_002526995.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131]
 gi|77389232|gb|ABA80417.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Rhodobacter sphaeroides 2.4.1]
 gi|221161514|gb|ACM02494.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides KD131]
          Length = 229

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/234 (41%), Positives = 142/234 (60%), Gaps = 12/234 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + S+  RI+EIGAVEL ++  T RT+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL+DKP F++I   F DF  E  A  + HNA FD+ F+N EL R     L P + +D
Sbjct: 60  GDEFLRDKPVFAAIGRAFLDFVGE--ARLVIHNAAFDMKFLNFELGRAGLPRLAPDQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR++ P +   L++LC+R+G+  S R KHGALLDS +L++VY++ ++GG Q +FG 
Sbjct: 118 TLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLE-LIGGRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKNAIW 237
            ++        +   P      R +P  L  RIT+EE   H   +  LG  AIW
Sbjct: 177 ASSAG-----ARPGSPEGEWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIW 225


>gi|254283824|ref|ZP_04958792.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR51-B]
 gi|219680027|gb|EED36376.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR51-B]
          Length = 244

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/241 (40%), Positives = 138/241 (57%), Gaps = 15/241 (6%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTGL+ ++  RIIEIG VEL++   T   +  ++ P  R+  P A+++HGI
Sbjct: 1   MRHVVLDTETTGLEVTQGHRIIEIGCVELVNRKLTGNHYHQYVQPQ-REIDPGAMEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSR 122
           T +FL DKP+F  +  EF  F +   AE I HNA FDVGFI+AEL R+        D  R
Sbjct: 60  TPDFLADKPTFDRVADEFLAFID--GAELIIHNAPFDVGFIDAELDRLGARRTAVADHCR 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + D+L +ARRKHP  RN L++LC+RYG+  S R+ HGALLD+ +L+DV++ M   G Q +
Sbjct: 118 VTDSLVLARRKHPGQRNSLDALCQRYGVDNSTRTLHGALLDAEILADVFLLMT--GGQTS 175

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDKTIQTL----GKNAI 236
            G   +E+            I  L   +P     R + EEL  H++ +  +    G   I
Sbjct: 176 LGLSDDEEGSLDTADNPDGGIRRLPTSRPPLRVMRASAEELARHEQRLDAIAAASGGPVI 235

Query: 237 W 237
           W
Sbjct: 236 W 236


>gi|149204383|ref|ZP_01881350.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035]
 gi|149142268|gb|EDM30315.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035]
          Length = 231

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/235 (40%), Positives = 140/235 (59%), Gaps = 6/235 (2%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + ++ DRI+EIGAVEL ++  T RTF  ++ P  R     A  +HG+
Sbjct: 1   MREIVLDTETTGFEPESGDRIVEIGAVELYNHMPTGRTFHKYINPQ-RAMPEAAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I  EF DF   Q+A  + HNA FD+ F+NAEL  +    L   + +D
Sbjct: 60  GDDFLRDKPLFAEIAQEFLDFV--QDARLVIHNAAFDMKFLNAELGWLKLPQLPWDQAVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR+K P S   L++LC+R+ I  S R+ HGALLDS +L++VY++ ++GG Q +F  
Sbjct: 118 TLAIARKKFPGSPASLDALCRRFQIDNSARTLHGALLDSEILAEVYLE-LIGGRQPDFVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            T           T  +     R  PL +R+T  E D H   +  +G  A+W ++
Sbjct: 177 ATGPTAKSGGSTDTA-HWRPQPRPTPLASRLTATENDAHQAFVAKMGDAALWRKF 230


>gi|149377452|ref|ZP_01895195.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893]
 gi|149358293|gb|EDM46772.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893]
          Length = 236

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/244 (39%), Positives = 151/244 (61%), Gaps = 18/244 (7%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D ++  RIIEIG VEL++   T R + V++ P  R+   EA+ +HGI
Sbjct: 1   MRQIVLDTETTGIDPAEGHRIIEIGCVELMERQITGRHYHVYINPE-REVEAEAITVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRI 123
           T+EFL DKP F++I  EF++F   + AE + HNA FD+GF+++E  R+   +   +   +
Sbjct: 60  TNEFLADKPKFAAIADEFFEFI--KGAELVIHNAAFDIGFMDSEFARLKPVRRTTEHCGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +D+L+IAR+KHP  +N+L++LCKRYGI  S+R  HGALLD+ +L+DVY+ +  G + ++ 
Sbjct: 118 VDSLAIARKKHPGQKNNLDALCKRYGIDNSNRELHGALLDAEILADVYLLLTGGQTALSL 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDK-PL-FTRITKEELDEHDKTIQTLGKNA---IWD 238
               +       E      I  L  D+ PL   R + +E + HD+ +  L K A   +WD
Sbjct: 178 DAGGD-------EAGGEGGIRRLADDRNPLPVPRASDDERNAHDEFMALLAKQAGTTVWD 230

Query: 239 RYIS 242
           +  +
Sbjct: 231 KLTT 234


>gi|85375423|ref|YP_459485.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis
           HTCC2594]
 gi|84788506|gb|ABC64688.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis
           HTCC2594]
          Length = 229

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/233 (39%), Positives = 133/233 (57%), Gaps = 6/233 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD K  DR++EIG VEL++   T  TF  +  P  R   P A ++HG+
Sbjct: 1   MREIVFDTETTGLDPKTGDRMVEIGCVELMNRVPTGETFHAYYNPE-RDMPPAAEEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  FL DKP F        +F    +A  +AHNA FD GF+N EL+ I ++ +   R++D
Sbjct: 60  SAAFLSDKPLFRDTADALLEFLG--DAPLVAHNAGFDFGFLNTELELIEREAISLDRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ IAR+KHP ++  L++LC RYG+  SHR KHGALLD+ LL+ VY++++ GG QI  G 
Sbjct: 118 TVQIARKKHPGAKVSLDALCSRYGVDRSHRVKHGALLDAELLAQVYVELL-GGRQIGLGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
                     E    P         P     + EEL  H   ++ + ++ +W+
Sbjct: 177 DPEAADTDPSEAAWKPETVARAFRTPRPHAASAEELARHKVFLEGI-ESPLWN 228


>gi|311694693|gb|ADP97566.1| DNA polymerase 3, epsilon subunit [marine bacterium HP15]
          Length = 239

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/246 (39%), Positives = 145/246 (58%), Gaps = 18/246 (7%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             MR+IV D ETTG+D ++  RIIEIG VEL++   T R + V++ P+ R+   EA+ +H
Sbjct: 2   QAMRQIVLDTETTGIDPAEGHRIIEIGCVELMERQLTGRNYHVYINPD-REVEAEAITVH 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPS 121
           GIT+EFL DKP F+ I  EF++F   + AE + HNA FDVGF+++E  R+   +   D  
Sbjct: 61  GITNEFLADKPRFAEIADEFFEFI--KGAELVIHNAAFDVGFMDSEFARLKPVRKTADHC 118

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            I+D+L+IAR +HP  +N+L++LCKRYG+  S+R  HGALLD+ +L+DVY  +++ G Q 
Sbjct: 119 GIVDSLAIARARHPGQKNNLDALCKRYGVDNSNRDLHGALLDAEILADVY--LLLTGGQT 176

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDK-PL-FTRITKEELDEHDKTIQTLGKNA---I 236
                        E       I  L  D+ PL   R +  E + H + +  L K A   +
Sbjct: 177 ALSLDAG-----SENGGGNGGIRRLPADRAPLSVVRASSSEAEAHQEFMSLLEKQAGETV 231

Query: 237 WDRYIS 242
           W +  S
Sbjct: 232 WGKLQS 237


>gi|326386170|ref|ZP_08207794.1| DNA polymerase III, epsilon subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209395|gb|EGD60188.1| DNA polymerase III, epsilon subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 230

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/202 (45%), Positives = 127/202 (62%), Gaps = 10/202 (4%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD +N DR++EIG VEL++   T   F  +  P+ R    EA  +HG+
Sbjct: 1   MREIVFDTETTGLDPRNGDRLVEIGCVELVNRIATGSVFHCYFNPD-RDMPAEAEAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  FL DKP FS   +E  DF    +A  +AHNA FD GF+N+EL       +   R++D
Sbjct: 60  SAAFLSDKPKFSERAAELLDFLG--DAPLVAHNAGFDFGFLNSELTFCGMGEVSRDRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T++IARRKHP ++  L++LC RYGI  SHR+KHGALLD+ LL+ +Y+++M GG QI  G 
Sbjct: 118 TVAIARRKHPGAKLSLDALCSRYGIDRSHRTKHGALLDAELLAQLYVELM-GGRQI--GL 174

Query: 186 KTNEDRF---FKEEKKTVPNIS 204
           +   D       E+  T P ++
Sbjct: 175 ELAADTLTVAVSEDAPTRPQLA 196


>gi|126463657|ref|YP_001044771.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105321|gb|ABN77999.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 229

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/234 (41%), Positives = 142/234 (60%), Gaps = 12/234 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + S+  RI+EIGAVEL ++  T RT+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL+DKP F++I   F DF  E  A  + HNA FD+ F+N EL R     L P + +D
Sbjct: 60  GDEFLRDKPVFAAIGRAFLDFVGE--ARLVIHNAAFDMKFLNFELGRSGLPRLAPDQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR++ P +   L++LC+R+G+  S R KHGALLDS +L++VY++ ++GG Q +FG 
Sbjct: 118 TLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLE-LIGGRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKNAIW 237
            ++        +   P      R +P  L  RIT+EE   H   +  LG  AIW
Sbjct: 177 ASSAG-----ARPGSPEGEWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIW 225


>gi|254511557|ref|ZP_05123624.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           KLH11]
 gi|221535268|gb|EEE38256.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           KLH11]
          Length = 240

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/247 (39%), Positives = 146/247 (59%), Gaps = 22/247 (8%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D ++ DRI+EIGAVEL ++  T  T+ V++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELWNHVATGETYHVYINPE-RGMPDEAFGVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             KDKP F+ +   F DF    +A+ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLENPRPPEKGEVTLKDKPVFAKVGQGFRDFVG--DAQLVIHNASFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    +  ++ IDTL+IAR++ P S   L++LC+R+GI  S+R  HGALLDS +L++VY+
Sbjct: 118 MGVPLIPMAQAIDTLAIARKRFPGSPASLDALCRRFGIDNSNRVLHGALLDSEILAEVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           + ++GG Q +FG  T+         +  P      R  PL +RIT++E   H K ++ LG
Sbjct: 178 E-LIGGRQPDFGLSTSASNAAGGGDEWRPT----ARPTPLSSRITEDERAAHQKFVEGLG 232

Query: 233 KNAIWDR 239
           ++A+W R
Sbjct: 233 ESALWTR 239


>gi|260429270|ref|ZP_05783247.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
 gi|260419893|gb|EEX13146.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
          Length = 230

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/234 (41%), Positives = 144/234 (61%), Gaps = 6/234 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + +  DRI+EIGAVEL ++  T +T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFEPETGDRIVEIGAVELYNHVPTGKTYHQYINPE-RSMPNEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I  +F +F    +A+ + HNA FDV F+NAEL+   +  L     ID
Sbjct: 60  GDDFLRDKPLFAQIVDDFLEFIG--DAKLVIHNAAFDVKFLNAELRWSKRPQLPRDCAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IARRK P S   L++LC+R+GI  S R+ HGALLDS +L+DVY++ ++GG Q +   
Sbjct: 118 TLEIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILADVYLE-LIGGKQPDLVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            T   +    +  +  +    +R   L +R+++EE   H   ++ LG NA+W R
Sbjct: 177 -TPAGQKSGADSASAGDWRPQRRAVALPSRLSEEEKAAHAAFVEKLGANALWTR 229


>gi|307297035|ref|ZP_07576851.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum
           L-1]
 gi|306877561|gb|EFN08789.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum
           L-1]
          Length = 230

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 95/238 (39%), Positives = 138/238 (57%), Gaps = 19/238 (7%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTG D +  DR++EIG +EL +   T RTF  +  P  R     A  +HG+
Sbjct: 1   MREIIFDTETTGFDPASGDRLVEIGCIELFNRVPTGRTFHAYYNPQ-RSMPAAAEAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D FL+DKP F     E   F   +++  +AHNA+FD GF+N EL+      +   R+ID
Sbjct: 60  SDGFLRDKPLFGHGVQELLAFL--EDSHLVAHNARFDFGFLNHELKLCGLPEVSMDRMID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T++IAR+ HP +++ L++LC RYGI  SHR KHGALLD+ LL+ +YI+ + GG QI  G 
Sbjct: 118 TVAIARQIHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAQLYIE-LTGGRQIGLGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTR------ITKEELDEHDKTIQTLGKNAIW 237
                   +EE+K + N+ L  +      R       + EEL+ H   + TL K  +W
Sbjct: 177 A-------QEEEKLIVNMELAAKAAVRPVRPARVFAASAEELERHAAFVATLEK-PLW 226


>gi|332559710|ref|ZP_08414032.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides WS8N]
 gi|332277422|gb|EGJ22737.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides WS8N]
          Length = 229

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 98/234 (41%), Positives = 142/234 (60%), Gaps = 12/234 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + S+  RI+EIGAVEL ++  T RT+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL+DKP F++I   F DF  E  A  + HNA FD+ F+N EL R     L P + +D
Sbjct: 60  GDEFLRDKPVFAAIGRAFLDFVGE--ARLVIHNAVFDMKFLNFELGRAGLPRLAPDQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR++ P +   L++LC+R+G+  S R KHGALLDS +L++VY++ ++GG Q +FG 
Sbjct: 118 TLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLE-LIGGRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKNAIW 237
            ++        +   P      R +P  L  RIT+EE   H   +  LG  AIW
Sbjct: 177 ASSAG-----ARPGSPEGEWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIW 225


>gi|262276480|ref|ZP_06054289.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
 gi|262220288|gb|EEY71604.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
          Length = 247

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 100/248 (40%), Positives = 148/248 (59%), Gaps = 31/248 (12%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IV D ETTG++ +        RIIEIGAVE+++   T R F V++ P+ R+  PEA+ 
Sbjct: 7   RIIVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIDPEAIS 65

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGITDEFL+DKPS++ I +EF +F   + AE +AHNA FD GF++ E Q      LDPS
Sbjct: 66  VHGITDEFLRDKPSYADIHAEFLEFI--KGAELVAHNAPFDTGFMDHEFQM-----LDPS 118

Query: 122 --------RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                   ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 119 IGKTGDFCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLL 178

Query: 174 MMVGGSQINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           M  G + + FG   + D+    E  ++       LK       R + +EL EH+  +  +
Sbjct: 179 MTGGQTTLKFGGSESSDQDSGGEAIRRVEAGTKKLK-----IIRASADELKEHEAQLDVI 233

Query: 232 GK--NAIW 237
            K  + +W
Sbjct: 234 EKKGSCLW 241


>gi|254477303|ref|ZP_05090689.1| DNA polymerase III, epsilon subunit [Ruegeria sp. R11]
 gi|214031546|gb|EEB72381.1| DNA polymerase III, epsilon subunit [Ruegeria sp. R11]
          Length = 244

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 97/246 (39%), Positives = 144/246 (58%), Gaps = 20/246 (8%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVELL++  T  TF V++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPE-RSMPAEAFGVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             +DKP F+ +   F DF   ++++ I HNA FD+ F+N EL+R
Sbjct: 60  GPDLLEPPQQPAPGAVTLRDKPVFAKVGKAFVDFV--RDSKMIIHNASFDMKFLNYELER 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    L   + +DTL+IAR++ P S   L++LC+R+ I  S+R+ HGALLDS +L+DVY+
Sbjct: 118 MGLAALPMDQAVDTLAIARKRFPGSPATLDALCRRFNIDNSNRTLHGALLDSEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           + ++GG Q +FG  T +    K     V +     R  PL  RIT++E + H   +  +G
Sbjct: 178 E-LIGGRQPDFGLSTAKSE--KSSTVQVDDWRPTARPSPLPPRITEQEKEAHAAFVAKMG 234

Query: 233 KNAIWD 238
           + A+W+
Sbjct: 235 EGALWN 240


>gi|269101978|ref|ZP_06154675.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161876|gb|EEZ40372.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 241

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/240 (42%), Positives = 145/240 (60%), Gaps = 17/240 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R IVFD ETTG++      +  RIIEIGAVE+++   T  TF V++ P+ R   PEA+++
Sbjct: 7   RIIVFDTETTGMNMSGPHYEGHRIIEIGAVEIINRKLTGNTFHVYIKPD-RAIDPEAIEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119
           HGITDEFL  KP+++ I  EF DF   Q AE +AHNA FD+GF++ E +++    L   +
Sbjct: 66  HGITDEFLVGKPTYAEIHQEFMDFI--QGAELVAHNAPFDIGFMDYEFRKLGLKDLKTDE 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ DTL +A+R  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ MM GG 
Sbjct: 124 MCKVTDTLDMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYL-MMTGG- 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--IW 237
           Q +    + E      E +     S  K  K +  R + +E+  H+  +  +GK A  IW
Sbjct: 182 QTSLQLSSGESSAAGAENEIRRLTSGRKALKVI--RASADEIAAHEDRLDLIGKKADVIW 239


>gi|163745117|ref|ZP_02152477.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45]
 gi|161381935|gb|EDQ06344.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45]
          Length = 229

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 93/233 (39%), Positives = 143/233 (61%), Gaps = 10/233 (4%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D ++ DRI+EIGAVEL+++  T  T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMNHMATGETYHQYINPE-RGMPEEAFQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I   F DF     ++ I HNA FD+ F+NAEL+ +    +   + +D
Sbjct: 60  GDDFLRDKPKFAQIGKSFLDFIG--TSKLIIHNAAFDIKFLNAELRWMGLPQIPWEQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IAR++ P S   L++LC+R+GI  + R+ HGALLDS +L++VY++ ++GG Q +F  
Sbjct: 118 TLEIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILAEVYLE-LIGGRQPDFAL 176

Query: 186 KTNEDRFFKE-EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            +  +R   E + +  P      R  PL +R+T+ E   H   I  LG + +W
Sbjct: 177 SSAPERKSGEPDTRWTPK----ARPNPLPSRLTEAEAAAHADFIGKLGDDVLW 225


>gi|134095496|ref|YP_001100571.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans]
 gi|133739399|emb|CAL62449.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans]
          Length = 234

 Score =  172 bits (435), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 99/233 (42%), Positives = 139/233 (59%), Gaps = 18/233 (7%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ ++ DRIIEIG VEL+D   T   F  ++ P  R +   AL +HG+
Sbjct: 1   MRQIVLDTETTGLNPRSGDRIIEIGCVELIDRRLTGNNFHHYINPE-RDSEEGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122
           T EFL DKP F+ I  EF D+ +   AE + HNA FDVGF++AEL+R+   PL       
Sbjct: 60  TTEFLSDKPKFAEIVDEFRDYIS--GAEVVIHNAPFDVGFLDAELKRVEM-PLFKDHVGG 116

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI- 181
           I+DTL  A+  HP  RN L++LC RYG++ +HR+ HGALLD+ LL++VY+ M  G + + 
Sbjct: 117 ILDTLQQAKELHPGKRNSLDALCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLS 176

Query: 182 -NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
            + G +  +      E   + +I        L    T EEL EH+  +Q+L K
Sbjct: 177 MDLGGQDADSDGIALEVVAIADI--------LLQPATAEELAEHELLMQSLDK 221


>gi|307610085|emb|CBW99626.1| hypothetical protein LPW_13941 [Legionella pneumophila 130b]
          Length = 233

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 97/232 (41%), Positives = 140/232 (60%), Gaps = 10/232 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTG+   +  R+IEIG +EL+D   T + F ++L P  R+    A ++HGI
Sbjct: 1   MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRI 123
           + EFL+DKP F  I +EF  F   + +E I HNA FDVGF+N+EL+ +  NK   D  RI
Sbjct: 60  STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR KHP  RN L++LCKRY I   +R  HGALLD+ +L+ VY+ M  G S +  
Sbjct: 118 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            F   E  F + + KT   I  L   KP+  +  +EEL +H   ++ + K +
Sbjct: 176 -FTEVESSFSQSKIKT-QEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKS 225


>gi|54294270|ref|YP_126685.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens]
 gi|53754102|emb|CAH15575.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens]
          Length = 233

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 97/232 (41%), Positives = 140/232 (60%), Gaps = 10/232 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTG+   +  R+IEIG +EL+D   T + F ++L P  R+    A ++HGI
Sbjct: 1   MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRI 123
           + EFL+DKP F  I +EF  F   + +E I HNA FDVGF+N+EL+ +  NK   D  RI
Sbjct: 60  STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR KHP  RN L++LCKRY I   +R  HGALLD+ +L+ VY+ M  G S +  
Sbjct: 118 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            F   E  F + + KT   I  L   KP+  +  +EEL +H   ++ + K +
Sbjct: 176 -FTEVESSFSQSKIKT-QEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKS 225


>gi|71726088|gb|AAZ39211.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum]
          Length = 238

 Score =  171 bits (434), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 99/241 (41%), Positives = 138/241 (57%), Gaps = 23/241 (9%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +  DRI+EIG VEL +   T   F  ++ P  R +   AL +HG+
Sbjct: 1   MRQIVLDTETTGLNPRTGDRILEIGGVELNNRMLTGNNFHQYINPE-RDSEEGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T EFL DKP F+ I  EF  F     AE I HNA FD+GF+NAE +R+N  P+      +
Sbjct: 60  TTEFLSDKPKFAEIAEEFRAFI--AGAELIIHNAPFDIGFLNAEFKRLNLPPVHEQVHGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A+  HP  RN L++LC RYG++ +HR  HGALLDS LL+DVY+ M  G + ++ 
Sbjct: 118 IDTLVQAKEMHPGKRNSLDALCDRYGVSNAHRKLHGALLDSELLADVYLAMTRGQNSLS- 176

Query: 184 GFKTNEDRFFKEEKKTVPN---ISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----I 236
                     +EE +   +   + ++   + +F   T +EL  H+ +I  L K A    I
Sbjct: 177 ---------MEEEVEVAADGAALEIVPLAEVIFQSATADELAAHEASIAGLDKAAKGQCI 227

Query: 237 W 237
           W
Sbjct: 228 W 228


>gi|329900785|ref|ZP_08272589.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549374|gb|EGF33942.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 235

 Score =  171 bits (433), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 93/231 (40%), Positives = 142/231 (61%), Gaps = 13/231 (5%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ ++ DR+IEIG VE+++   T + F  +L P  R +   AL +HG+
Sbjct: 1   MRQIVLDTETTGLNPRSGDRVIEIGCVEMINRRLTGKNFHCYLNPE-RDSEEGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122
           T EFL+DKP F+++ +E  D+ +   AE I HNA FDVGF++AE +R++  PL     S 
Sbjct: 60  TTEFLRDKPKFAAVAAELRDYIS--GAEVIIHNAPFDVGFLDAEFKRLDI-PLFNTQVSG 116

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDTL  A+  HP  RN L+SLC RYG++ +HR+ HGALLD+ LL++VY+ M  G + ++
Sbjct: 117 VIDTLVQAKEMHPGKRNSLDSLCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLS 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
                 +     +  ++  ++ L+     L    + EEL EH+  +  L K
Sbjct: 177 MELDDGD-----QAGESGAHLELVPLADILVLPASAEELGEHELALTALDK 222


>gi|89075025|ref|ZP_01161470.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
 gi|89049264|gb|EAR54828.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
          Length = 241

 Score =  171 bits (433), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 100/246 (40%), Positives = 145/246 (58%), Gaps = 17/246 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R IVFD ETTG++      +  RI+EIGAVE+++   T +TF V++ P+ R   
Sbjct: 1   MKATNQRIIVFDTETTGMNMTGPHYEGHRIVEIGAVEIINRKLTGKTFHVYIKPD-RPID 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA+ +HGITDEFL  KPS++ I  EF DF +   AE +AHNA FD+GF++ E Q +  D
Sbjct: 60  PEAIDVHGITDEFLIGKPSYADIHQEFIDFID--GAELVAHNASFDIGFMDYEFQLMGSD 117

Query: 117 ---PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                D  ++ DTL +A+R  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 118 LKKTEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYL- 176

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           MM GG       K + D     EK+      + +R        + +EL  H++ +  +GK
Sbjct: 177 MMTGGQT---SLKLSGDNEGDSEKEFAIKRLVGERKGLKVICASADELVSHEERLDLIGK 233

Query: 234 NA--IW 237
            A  +W
Sbjct: 234 KADVLW 239


>gi|256823144|ref|YP_003147107.1| DNA polymerase III subunit epsilon [Kangiella koreensis DSM 16069]
 gi|256796683|gb|ACV27339.1| DNA polymerase III, epsilon subunit [Kangiella koreensis DSM 16069]
          Length = 233

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/238 (42%), Positives = 149/238 (62%), Gaps = 13/238 (5%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+  +  RIIEIG VEL++   T   +  +L P+ R+    A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPYDGHRIIEIGCVELVNRKFTGNHYHQYLQPD-REIDQGAMEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPL-DPSR 122
           T+EFL+DKP F  +  EF +F   + AE + HNA FDVGF++ EL  ++  K  L D   
Sbjct: 60  TNEFLEDKPRFVDVVDEFLEFI--EGAELVIHNAPFDVGFLDHELSMLDSSKGKLSDYCT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+ HP  RN L++LCKRY I  SHR  HGALLDS +L+DVY++M  G + + 
Sbjct: 118 VLDTLVLARQMHPGQRNSLDALCKRYEIDNSHRELHGALLDSEILADVYLRMTGGQTSLT 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKNAIWDR 239
            G +   ++   E   TV  IS  +  +PL   + T++E  EH + + +L  +AIW++
Sbjct: 178 LGRQNAANQQTTE--TTVRRISANR--QPLKVIKATEQESKEHQQKLSSL-NDAIWNQ 230


>gi|153835770|ref|ZP_01988437.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01]
 gi|156975479|ref|YP_001446386.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116]
 gi|148867537|gb|EDL66875.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01]
 gi|156527073|gb|ABU72159.1| hypothetical protein VIBHAR_03210 [Vibrio harveyi ATCC BAA-1116]
          Length = 238

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/239 (41%), Positives = 146/239 (61%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R+  P+A+ 
Sbjct: 11  RIVVLDTETTGMNLEGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPDAIG 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PL 118
           +HGITDEFL DKP +S++  EF DF   + AE +AHNA FD GF++ E + +N       
Sbjct: 70  VHGITDEFLVDKPEYSAVHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEMLNPSIGKTD 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ +M GG
Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYL-LMTGG 186

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            Q +  F  N+     E  + V     LK       R T +E++ H K ++ L  ++IW
Sbjct: 187 -QTSLEFNANKKDGEAEGIRRVEGRKALK-----VLRATADEVEAHQKRLE-LVNDSIW 238


>gi|146278706|ref|YP_001168865.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556947|gb|ABP71560.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 237

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/233 (42%), Positives = 140/233 (60%), Gaps = 10/233 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + S+  RI+EIGAVEL ++  T RT+  ++ P  R    EA ++HG+
Sbjct: 9   MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 67

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL+DKP FS I S F +F  E  A  + HNA FD+ F+N EL R+    L   R +D
Sbjct: 68  GDEFLRDKPVFSEIGSAFLEFVGE--ARLVIHNAAFDMKFLNFELGRVGLPRLPFERALD 125

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR++ P +   L++LC+R+G+  S R KHGALLDS +L++VY++ ++GG Q +FG 
Sbjct: 126 TLALARKRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLE-LIGGRQPDFGL 184

Query: 186 KTNED-RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                 R    E +  P      R   L  RIT+EE   H   +  LG  AIW
Sbjct: 185 SAASGTRSGGAEGEWRPR----PRPVALPPRITEEEAAAHAAFVAKLGDGAIW 233


>gi|90581658|ref|ZP_01237447.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
 gi|90437142|gb|EAS62344.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
          Length = 241

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/246 (40%), Positives = 145/246 (58%), Gaps = 17/246 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R IVFD ETTG++      +  RIIEIGAVE+++   T +TF V++ P+ R   
Sbjct: 1   MKATNQRIIVFDTETTGMNMTGPHYEGHRIIEIGAVEIINRKLTGKTFHVYIKPD-RPID 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA+ +HGITDEFL  KPS++ I  EF DF +   AE +AHNA FD+GF++ E Q +  D
Sbjct: 60  PEAIDVHGITDEFLIGKPSYADIHQEFIDFID--GAELVAHNASFDIGFMDYEFQLMGSD 117

Query: 117 ---PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                D  ++ DTL +A+R  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 118 LKKTEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYL- 176

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           MM GG       K + D     EK+      + +R        + +EL  H++ +  +GK
Sbjct: 177 MMTGGQT---SLKLSGDDEGDSEKEFAIKRLVSERKGLKVICASADELVSHEERLDLIGK 233

Query: 234 --NAIW 237
             + +W
Sbjct: 234 KTDVLW 239


>gi|259417863|ref|ZP_05741782.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
 gi|259346769|gb|EEW58583.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
          Length = 243

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/246 (39%), Positives = 142/246 (57%), Gaps = 21/246 (8%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVELL++  T  TF V++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPE-RSMPHEAFGVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             KDKP F+ +   F DF   ++++ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQPAAPGQVTLKDKPLFAEVGQAFLDFV--RDSKMVIHNASFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +N   L   + IDTL++AR++ P S   L++LC+R+ I  S+R+ HGALLDS +L+DVY+
Sbjct: 118 MNLRQLPMEQAIDTLAMARKRFPGSPATLDALCRRFSIDNSNRTLHGALLDSEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           + ++GG Q +FG  T        +     N     R  PL +R+T EE   H++ +  LG
Sbjct: 178 E-LIGGRQPDFGLSTQSG---SGQNAADTNWRPSPRATPLPSRLTSEEKTAHEEFVAKLG 233

Query: 233 KNAIWD 238
             A+W+
Sbjct: 234 AEALWN 239


>gi|261856413|ref|YP_003263696.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus
           c2]
 gi|261836882|gb|ACX96649.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus
           c2]
          Length = 237

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/234 (42%), Positives = 138/234 (58%), Gaps = 13/234 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG+ + +  R++EIGAVE+++   T +TF  +L P  R     A  +HG++
Sbjct: 4   RQIVLDTETTGMPAADGHRLVEIGAVEMIERRVTGKTFHCYLNPE-RLVDEGAFNVHGLS 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLD--PSRI 123
           D FL DKP F+ +  EF  F     AE I HNA+FDVGF++AEL R+ N   L      +
Sbjct: 63  DAFLADKPKFADVVDEFLAFI--AGAELIIHNAEFDVGFLDAELARLANGGRLADVAGSV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L+IAR+KHP  RN L++LC+RY I  S R+ HGALLDS +L+DVY+ +   G Q   
Sbjct: 121 TDSLAIARKKHPGQRNSLDALCRRYSIDNSARTLHGALLDSEILADVYLALT--GGQKTL 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT--KEELDEHDKTIQTLGKNA 235
           GF +   +   +E K   +I  L  D+P    IT  +EE   H   + TLGK  
Sbjct: 179 GFDSEHGQ--GDEHKQAASIIRLPADRPPLRVITANEEERAAHAAWLVTLGKEG 230


>gi|312883833|ref|ZP_07743552.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368582|gb|EFP96115.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 244

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/244 (38%), Positives = 142/244 (58%), Gaps = 19/244 (7%)

Query: 5   NKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           ++ R IV D ETTG++       +  RIIEIGAVE+++   T R F V++ P+ R    E
Sbjct: 8   DQHRIIVLDTETTGMNLEGGPHYQGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RDIQAE 66

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-- 116
           A+ +HGITDEFL+DKP +  + +EF  F N   AE +AHNA FDVGF++ E   ++    
Sbjct: 67  AVGVHGITDEFLRDKPEYKDVHAEFLAFIN--GAELVAHNASFDVGFMDYEFSMLDASIG 124

Query: 117 -PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M 
Sbjct: 125 KTAQYCKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMT 184

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            G + + F   +  +   +  K+       LK       R T +E+D H+K ++ + KN 
Sbjct: 185 GGQTSLQFNAGSASEEGVESIKRAAQGRKALK-----VLRATADEIDAHEKRLELIEKNG 239

Query: 236 --IW 237
             +W
Sbjct: 240 HCLW 243


>gi|269960617|ref|ZP_06174989.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3]
 gi|269834694|gb|EEZ88781.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3]
          Length = 238

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/239 (41%), Positives = 146/239 (61%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RI+EIGAVE+++   T R F V+L P+ R+  P+A+ 
Sbjct: 11  RIVVLDTETTGMNLEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYLKPD-REIQPDAIG 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PL 118
           +HGITDEFL DKP +S++  EF DF   + AE +AHNA FD GF++ E + +N       
Sbjct: 70  VHGITDEFLVDKPEYSAVHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEMLNPSIGKTD 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ +M GG
Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYL-LMTGG 186

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            Q +  F  N+     E  + V     LK       R T +E++ H K ++ L  ++IW
Sbjct: 187 -QTSLEFNANKKDGEAEGIRRVEGRKALK-----VLRATADEVEAHQKRLE-LVNDSIW 238


>gi|87198139|ref|YP_495396.1| DNA polymerase III, epsilon subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133820|gb|ABD24562.1| DNA polymerase III, epsilon subunit [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 230

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 92/234 (39%), Positives = 133/234 (56%), Gaps = 6/234 (2%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD ++ DR++EIG +E+ +   T   F  +  P  R    EA  +HG+
Sbjct: 2   MREIVFDTETTGLDPRSGDRLVEIGCIEMFNRVPTGAVFHCYFNPE-RDMPAEAEAVHGL 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  FL DKP F+    +   F    ++  +AHNA FD GFIN EL+   ++P+   R++D
Sbjct: 61  SIAFLSDKPKFAEKADDLLAFI--ADSPMVAHNAGFDFGFINNELELCGREPVSRDRMVD 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T++IARRKHP ++  L++LC RYGI  SHR+KHGALLD+ LL+ +Y+++  GG QI    
Sbjct: 119 TVAIARRKHPGAKLSLDALCSRYGIDRSHRTKHGALLDAELLAQLYVELQ-GGRQIGLEL 177

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                    EE  TV +        P     + EEL  H + +    +  IW R
Sbjct: 178 AAQSAIAVTEEVVTVTSSVTRVFRSPRPHSASAEELARHAEFMAGFSE-PIWSR 230


>gi|187479401|ref|YP_787426.1| DNA polymerase III subunit epsilon [Bordetella avium 197N]
 gi|115423988|emb|CAJ50541.1| DNA polymerase III, epsilon chain [Bordetella avium 197N]
          Length = 243

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/240 (40%), Positives = 138/240 (57%), Gaps = 20/240 (8%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTGLD ++  RI+EIG VEL++   T R   ++L P+ R + PEAL +HG+
Sbjct: 1   MRQIIFDTETTGLDPAQGHRIVEIGCVELVNRMVTGRNLHLYLNPD-RDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T  FL DKP F  I   F  F   + AE IAHNA FDV F NAELQ++ +  LD   + +
Sbjct: 60  TTAFLSDKPRFGDIAEAFIQFI--EGAELIAHNASFDVKFFNAELQKVGRKTLDNYCASV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L+ AR   P  RN L++LC RYGI+ +HR+ HGALLDS LL++V++ M  G   +  
Sbjct: 118 TDSLAHARTLFPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK--EELDEHDKTIQTL----GKNAIW 237
               N+    +        I+L   D  +   +    E+L EH+  +  L    G + +W
Sbjct: 178 DVDDNQAGGNR--------IALAAFDASVLPVVAAAGEDLTEHEAYLAALDKAVGGSCLW 229


>gi|126724532|ref|ZP_01740375.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Rhodobacterales bacterium HTCC2150]
 gi|126705696|gb|EBA04786.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Rhodobacterales bacterium HTCC2150]
          Length = 230

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/240 (38%), Positives = 137/240 (57%), Gaps = 18/240 (7%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTG D    DRI+EIGAVEL ++  T +T+  ++ P  R    EA ++HG+
Sbjct: 1   MRELVLDTETTGFDPFSGDRIVEIGAVELFNHMPTGKTYHQYINPQ-RAMPAEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL  +P F+ I   F DF        + HNA FD+ F+NAEL  + +  L   + +D
Sbjct: 60  GDEFLARQPVFADIAQAFVDFVGTDL--LVIHNASFDMKFLNAELDWLGRAKLPMEQSLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR+K P S   L++LC+R+G+    R KHGALLDS +L++VY++ ++GG Q +FG 
Sbjct: 118 TLAIARKKFPGSPASLDALCRRFGVNNDAREKHGALLDSEILAEVYLE-LIGGRQPDFGL 176

Query: 186 KT------NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            T        D  F E +          R  PL  RI++EE   H + ++ L    +W +
Sbjct: 177 NTAAAASSGTDAGFSEWRAQ-------PRPNPLAPRISEEEAKAHREFVEKLADGGLWPK 229


>gi|163801804|ref|ZP_02195701.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
 gi|159174312|gb|EDP59116.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
          Length = 238

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/241 (42%), Positives = 146/241 (60%), Gaps = 24/241 (9%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IV D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R+  PEA+ 
Sbjct: 11  RIIVLDTETTGMNLEGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPEAIG 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118
           +HGITDEFL DKP +S +  EF DF   + AE +AHNA FD GF++ E + +  DP    
Sbjct: 70  VHGITDEFLVDKPDYSHVHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEML--DPAIGK 125

Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ +M 
Sbjct: 126 TDDFCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYL-LMT 184

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236
           GG Q +  F  N+     E  + V     LK       R T +E++ H K ++ L  ++I
Sbjct: 185 GG-QTSLEFNANKKNGEPEGIRRVQGRKALK-----VLRATADEVEAHQKRLE-LVNDSI 237

Query: 237 W 237
           W
Sbjct: 238 W 238


>gi|126738511|ref|ZP_01754216.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6]
 gi|126720310|gb|EBA17016.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6]
          Length = 242

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/245 (37%), Positives = 146/245 (59%), Gaps = 20/245 (8%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVEL ++  T +T+  ++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELFNHMPTGKTYHEYINPE-RSMPHEAFGVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             +DKP F+ +   F DF   Q+++ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQQPEKGQVTLRDKPVFAKVGQSFLDFV--QDSKLVIHNASFDMKFLNAELDW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    L  ++ IDTL++AR++ P +   L++LC+R+ I  S+R+ HGALLDS +L++VY+
Sbjct: 118 MGLPKLPLNQAIDTLAVARKRFPGAPATLDALCRRFQIDNSNRTLHGALLDSEILAEVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           + ++GG Q +FG  T+      +E +   +    +R  PL +R+T+EEL  HD  ++ +G
Sbjct: 178 E-LIGGRQPDFGLSTSTSG--SKEGQVAEDWRPTQRATPLPSRLTQEELSAHDAFVEKMG 234

Query: 233 KNAIW 237
             A+W
Sbjct: 235 DAALW 239


>gi|209966072|ref|YP_002298987.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW]
 gi|209959538|gb|ACJ00175.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW]
          Length = 227

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/242 (37%), Positives = 139/242 (57%), Gaps = 31/242 (12%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D+ N DR++EIG VEL+++  T RT+  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGIDALNGDRVVEIGCVELMNHVATGRTYHQYINPE-RDMPIEAFNVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL  +P+F+ I   F DF   Q++  + HNA FDVGF+NAEL R+    L  +R ID
Sbjct: 60  STEFLSGQPTFAEIVGPFLDFI--QDSPLVIHNATFDVGFLNAELTRLGMRTLPAARAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-------- 177
           T+ +ARR+ P +   L++LC+R+ I  S RS HGALLD+ LL++VY++++ G        
Sbjct: 118 TVVLARRRFPGAPASLDALCRRFEIDNSARSYHGALLDAQLLAEVYLELLGGRQPDLVLA 177

Query: 178 --GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
             G+Q    F+T+  R  +E +   P                 EEL+ H+  ++      
Sbjct: 178 PTGAQAAASFRTDRPR--REPRPHAP---------------LPEELEAHEAFLKGFKTPP 220

Query: 236 IW 237
           +W
Sbjct: 221 LW 222


>gi|54297294|ref|YP_123663.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris]
 gi|53751079|emb|CAH12490.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris]
          Length = 233

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/232 (41%), Positives = 139/232 (59%), Gaps = 10/232 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTG+   +  R+IEIG +EL+D   T + F ++L P  R+    A ++HGI
Sbjct: 1   MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRI 123
           + EFL+DKP F  I +EF  F   + +E I HNA FDVGF+N+EL+ +  NK   D  RI
Sbjct: 60  STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR KHP  RN L++LCKRY I   +R  HGALLD+ +L+ VY+ M  G S +  
Sbjct: 118 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            F   E    + + KT   I  L   KP+  +  +EEL +H   ++ + K +
Sbjct: 176 -FTEVESSLSQSKIKT-QEIKSLSLKKPVIMKANEEELIQHQSFVEFISKKS 225


>gi|304311305|ref|YP_003810903.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1]
 gi|301797038|emb|CBL45251.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1]
          Length = 246

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/251 (38%), Positives = 148/251 (58%), Gaps = 22/251 (8%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+IV D ETTGL+ ++  RIIEIG VEL+D   T R +  ++ P  R     A+ +HGI
Sbjct: 4   LRQIVLDTETTGLEPAEGHRIIEIGCVELVDRRHTGRHYHQYINPE-RLVDAGAMAVHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--DPLDPSRI 123
           T+EFL DKP F+ I   F++F N   AE + HNA FDVGFIN E   + +     +   +
Sbjct: 63  TNEFLADKPKFAEIADAFFEFIN--GAELVIHNAAFDVGFINHEFNLLKRFGTVGEHCSV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR+KHP  +N+L++LC+RY I  S R  HGALLD+ +L+DVY+ M   G Q   
Sbjct: 121 LDTLLMARKKHPGQKNNLDALCRRYEIDNSQRELHGALLDAQILADVYLAMT--GGQTAL 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTLGK----N 234
            F + +     E +    +++ ++R      PL   R ++ E++ H++ +Q L K    N
Sbjct: 179 SFSSGD-----EGQSGAASVATVQRFSDNRAPLKVIRASQAEIEAHEQYVQLLDKRSSGN 233

Query: 235 AIWDRYISSNQ 245
            ++ +Y  S++
Sbjct: 234 TVYRKYSPSSE 244


>gi|52841614|ref|YP_095413.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628725|gb|AAU27466.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 251

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/232 (41%), Positives = 139/232 (59%), Gaps = 10/232 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTG+   +  R+IEIG +EL+D   T + F ++L P  R+    A ++HGI
Sbjct: 19  MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 77

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRI 123
           + EFL+DKP F  I +EF  F   + +E I HNA FDVGF+N+EL+ +  NK   D  RI
Sbjct: 78  STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 135

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR KHP  RN L++LCKRY I   +R  HGALLD+ +L+ VY+ M  G S +  
Sbjct: 136 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 193

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            F   E    + + KT   I  L   KP+  +  +EEL +H   ++ + K +
Sbjct: 194 -FTEVESSLSQSKIKT-QEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKS 243


>gi|330445182|ref|ZP_08308834.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489373|dbj|GAA03331.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 241

 Score =  169 bits (427), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 89/185 (48%), Positives = 121/185 (65%), Gaps = 12/185 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R IVFD ETTG++      +  RIIEIGAVE+++   T  TF V++ P+ R   
Sbjct: 1   MKATNQRIIVFDTETTGMNMSGPHYEGHRIIEIGAVEIINRKLTGNTFHVYIKPD-RPID 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA+ +HGITDEFL  KPS++ I  EF DF +   AE +AHNA FD+GF++ E Q +  D
Sbjct: 60  PEAIDVHGITDEFLVGKPSYAEIHQEFIDFID--GAELVAHNASFDIGFMDYEFQLMGSD 117

Query: 117 ---PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                D  ++ DTL +A+R  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 118 LKKTEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYL- 176

Query: 174 MMVGG 178
           MM GG
Sbjct: 177 MMTGG 181


>gi|330878790|gb|EGH12939.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 259

 Score =  169 bits (427), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 101/249 (40%), Positives = 143/249 (57%), Gaps = 15/249 (6%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+  +   RI+EIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSR--- 122
           +EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   I  +D  D +R   
Sbjct: 68  NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALIGAQDKADITRHCK 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++
Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLS 185

Query: 183 FGFKTNEDRFFKEEKKT-VPNISLLKRD-KPL-FTRITKEELDEHDKTIQTL----GKNA 235
                ++     E        I  L  D KP    R ++ EL EH+  + T+    G  A
Sbjct: 186 LAGNASDGNGSAEGSSNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTIAKATGAPA 245

Query: 236 IWDRYISSN 244
           +W + + + 
Sbjct: 246 LWVQMLEAG 254


>gi|94502173|ref|ZP_01308671.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65]
 gi|94425698|gb|EAT10708.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65]
          Length = 237

 Score =  169 bits (427), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 83/180 (46%), Positives = 120/180 (66%), Gaps = 6/180 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR++V D ETTG+   + RIIEIG VEL+    T R +  ++ P  R+  PEA+++HGIT
Sbjct: 1   MRQVVLDTETTGIGDGH-RIIEIGCVELVGRKLTGRHYHQYINPQ-REVDPEAMEVHGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRII 124
           DEFL DKP F+ + +EF DF N   AE + HNA FDVGF++ E  +++  P   +   ++
Sbjct: 59  DEFLADKPVFAQVANEFLDFIN--GAELVIHNAPFDVGFMDMEFAKLSNFPKTAEVCGVL 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR+ +P  RN L++LC+R GI  SHR  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 117 DTLTLARKMYPGQRNSLDALCRRLGIDNSHRELHGALLDSEILADVYLLMTGGQTALSLA 176


>gi|77458414|ref|YP_347919.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf0-1]
 gi|77382417|gb|ABA73930.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens Pf0-1]
          Length = 252

 Score =  169 bits (427), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 97/248 (39%), Positives = 140/248 (56%), Gaps = 15/248 (6%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+  +   RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 4   RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIAVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPSR 122
           +EFL  KP F+ +  EF++F N   A+ I HNA FDVGFIN E   + +    D      
Sbjct: 63  NEFLVGKPRFAEVADEFFEFIN--GAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++
Sbjct: 121 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLS 180

Query: 183 FGFKTNEDRFFKEEK-KTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKN----A 235
                ++     E    +   I  L  D+      R T+ EL EH   ++ + K+    A
Sbjct: 181 LAGNASDGNGTGEGADNSATEIRRLPADRQPGRIIRATEAELAEHQVRLEIIAKSAGAPA 240

Query: 236 IWDRYISS 243
           +W + + +
Sbjct: 241 LWTQLLEA 248


>gi|254491084|ref|ZP_05104265.1| DNA polymerase III, epsilon subunit [Methylophaga thiooxidans
           DMS010]
 gi|224463597|gb|EEF79865.1| DNA polymerase III, epsilon subunit [Methylophaga thiooxydans
           DMS010]
          Length = 245

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 93/245 (37%), Positives = 143/245 (58%), Gaps = 14/245 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M    + R+++ D ETTG+ + +D RIIEIG VE+++   T +TF  ++ P  R     A
Sbjct: 1   MAELTQKRQVILDTETTGISTADDHRIIEIGCVEMVNRRLTGQTFHQYINPQ-RDIDAGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           +++HGIT+EFL DKP F+ I  EF  F   + AE + HNA FDVGFIN EL +++ +   
Sbjct: 60  IEVHGITNEFLADKPLFTEIAEEFLSFI--EGAELVIHNAPFDVGFINHELAKLDGETRR 117

Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
               S ++DTL +AR KHP  +N+L++LCKRY +  ++R  HGALLD+ +L+DVY+ M  
Sbjct: 118 VETLSTVLDTLKMARDKHPGQKNNLDALCKRYDVNNANRELHGALLDAEILADVYLAMT- 176

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--- 233
            G Q++      ED   K+       I+ LKR+  +  +   +EL  H   ++ + K   
Sbjct: 177 -GGQVSLTLMAKEDATPKKGDGQA-EITQLKRESLMVLKANDDELAAHQDMLEKVNKASD 234

Query: 234 -NAIW 237
              +W
Sbjct: 235 GQCVW 239


>gi|148358915|ref|YP_001250122.1| DNA polymerase III subunit epsilon [Legionella pneumophila str.
           Corby]
 gi|296106963|ref|YP_003618663.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280688|gb|ABQ54776.1| DNA polymerase III, epsilon subunit [Legionella pneumophila str.
           Corby]
 gi|295648864|gb|ADG24711.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99
           Alcoy]
          Length = 233

 Score =  168 bits (426), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 96/232 (41%), Positives = 138/232 (59%), Gaps = 10/232 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTG+   +  R+IEIG +EL+D   T + F ++L P  R+    A ++HGI
Sbjct: 1   MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRI 123
           + EFL+DKP F  I +EF  F   + +E I HNA FDVGF+N+EL+ +  NK   D  RI
Sbjct: 60  STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR KHP  RN L++LCKRY I   +R  HGALLD+ +L+ VY+ M  G S +  
Sbjct: 118 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            F   E      + KT   I  L   KP+  +  +EEL +H   ++ + K +
Sbjct: 176 -FTEVESSMSHSKIKT-QEIKSLSLKKPVIMKANEEELIQHQSFVEFISKKS 225


>gi|296284843|ref|ZP_06862841.1| DNA polymerase III epsilon subunit [Citromicrobium bathyomarinum
           JL354]
          Length = 240

 Score =  168 bits (426), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 84/180 (46%), Positives = 116/180 (64%), Gaps = 5/180 (2%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTG+D +   R++EIG VEL+D   T  TF  +  P  R    EA  +HG+
Sbjct: 8   MREIIFDTETTGIDPRQGHRMVEIGCVELVDRMPTGETFHAYYNPE-RDMPAEAEAIHGL 66

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL DKP F+    EF DF  +     +AHNA FD  F+NAEL+   ++P+  +R ID
Sbjct: 67  SAQFLADKPRFADAVDEFLDFVRDDM--LVAHNAGFDFAFLNAELELCTREPICLTRKID 124

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRK+P  ++ L++LC RYG+  SHR  HGALLD+ LL+ VYI+ + GG QI  G 
Sbjct: 125 TLEMARRKNPGGKHSLDALCSRYGVDRSHRVFHGALLDAELLAQVYIE-LTGGRQIAMGL 183


>gi|317490808|ref|ZP_07949244.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920355|gb|EFV41678.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 244

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 98/243 (40%), Positives = 146/243 (60%), Gaps = 21/243 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+D+FL DKP+F+ I  EF +F   + AE + HNA FD+GF++ E +++N+D P   +
Sbjct: 66  HGISDDFLLDKPTFADIADEFLEFI--RGAELVIHNAPFDIGFMDYEFRKLNRDIPKTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +ARR  P  RN L++LC RY I  + R+ HGALLDS +L+DVY+ M  G +
Sbjct: 124 FCKITDSLVMARRLFPGKRNSLDALCNRYEIDNTKRTLHGALLDSQILADVYLTMTGGQT 183

Query: 180 QINFGFKTNED--RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234
            + F  ++  +  R   E +K V  +  LK       R + EEL EH+     +Q  G +
Sbjct: 184 SLTFSMESEGEKPRPTGEVQKIVRKMQALK-----VVRASAEELAEHEHRLDLVQKKGGS 238

Query: 235 AIW 237
            +W
Sbjct: 239 CLW 241


>gi|330829021|ref|YP_004391973.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565]
 gi|328804157|gb|AEB49356.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565]
          Length = 244

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 98/243 (40%), Positives = 143/243 (58%), Gaps = 21/243 (8%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+I+ D ETTG+++         RIIEIG VE+++   T   + V++ P+ R   PEA++
Sbjct: 8   RQIILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTGNHYHVYIKPD-RLVDPEAIQ 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLD 119
           +HGITDEFL+DKPSFS I  EF +F   + AE IAHNA FDV F++ E  ++  N    D
Sbjct: 67  VHGITDEFLRDKPSFSQIADEFLEFI--RGAELIAHNAPFDVSFMDYEFSKLGLNFKTAD 124

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I DTL++AR   P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G +
Sbjct: 125 ICTITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQT 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDK---TIQTLGKN 234
           ++N   ++NE+     E     +I  L+ ++P     R   E    H+     +Q  G +
Sbjct: 185 KLNLATESNEN-----ENNQDTSIRRLESNRPAIKVVRACAEVQALHEARLDLVQKKGGS 239

Query: 235 AIW 237
            +W
Sbjct: 240 CLW 242


>gi|121605184|ref|YP_982513.1| DNA polymerase III subunit epsilon [Polaromonas naphthalenivorans
           CJ2]
 gi|120594153|gb|ABM37592.1| DNA polymerase III, epsilon subunit [Polaromonas naphthalenivorans
           CJ2]
          Length = 240

 Score =  168 bits (425), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 97/238 (40%), Positives = 144/238 (60%), Gaps = 16/238 (6%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL ++N DRIIEIG VEL+    T      +L P GR +  +ALK+HGI
Sbjct: 1   MRQIVLDTETTGLSAENGDRIIEIGCVELVRRKLTGNNKHFYLNP-GRNSHEDALKVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           ++EFLKDKP FS++  E  D+   Q AE I HNA FDV F+N EL+ I ++PL    +++
Sbjct: 60  SNEFLKDKPKFSAVVDELLDYL--QGAEIIIHNAPFDVSFLNKELEIIGREPLMHCVAKV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L +A+   P  RN LN+LC R  +  S R+ HGALLD+ LL+DVYI +  G + +  
Sbjct: 118 TDSLMMAKEMFPGKRNSLNALCDRLEVDNSGRTLHGALLDAELLADVYINLTRGQNSLMM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237
              +       +  ++ P + L   + P+ +  +++E+D H+K + TL K +    +W
Sbjct: 178 DIGSP-----VQTGESEPLVDLRLFELPVLSA-SEQEMDAHEKVLLTLDKASRGKTVW 229


>gi|237746089|ref|ZP_04576569.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes HOxBLS]
 gi|229377440|gb|EEO27531.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes HOxBLS]
          Length = 248

 Score =  168 bits (425), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 100/239 (41%), Positives = 141/239 (58%), Gaps = 16/239 (6%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL + + DRIIEIG VE+L+   T+  F  ++ P  R + P+AL +HG+
Sbjct: 1   MRQIVLDTETTGLYANDGDRIIEIGCVEVLNRRVTDHHFHQYINPE-RDSHPDALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL DKP F+ I   F DF   + AE + HNA FDVGF+NAEL R+N  P++   S I
Sbjct: 60  TTEFLSDKPKFAEIAQAFCDFI--KGAELVIHNAPFDVGFLNAELARLNLPPVEELASCI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L  AR   P  RN L++LC+R+ I  +HR+ HGALLD+ LL++VY+ M  G   +  
Sbjct: 118 TDSLLKARDMFPGRRNSLDALCERFEIDNTHRTLHGALLDAELLAEVYLAMTRGQETLEI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-----GKNAIW 237
             K       +E +K  P  SL    + L    T+EEL +H++ +  +     G   +W
Sbjct: 178 E-KLTLSAAEEEARKNHPLSSL----RILVLAPTEEELQKHEEVLDDIEKGNKGAPCVW 231


>gi|220934132|ref|YP_002513031.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995442|gb|ACL72044.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 235

 Score =  167 bits (424), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 98/241 (40%), Positives = 141/241 (58%), Gaps = 17/241 (7%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N  R++V D ETTGL+ ++  RIIEIG VEL+    T RTF  +L P+ R+    AL +H
Sbjct: 4   NNHRQVVLDTETTGLEPAQGHRIIEIGCVELVGRRITRRTFHHYLQPD-REIDEGALAVH 62

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDP 120
           GI++EFL DKP F+ +  EF +F   + AE + HNA FDVGF++ EL+ ++       D 
Sbjct: 63  GISNEFLADKPRFADVVDEFLEFI--RGAELVIHNAPFDVGFLDHELKLLDAARGQVTDY 120

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           S I+DTL +ARR HP  RN L++LCKRY I  S R  HGALLD+ +L+DVY+ M  G + 
Sbjct: 121 SSILDTLDLARRMHPGQRNSLDALCKRYQIDNSGRELHGALLDARILADVYLAMTGGQTT 180

Query: 181 INFGFKT----NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236
           ++ G +      E R   E  + +P      R +    R ++ EL  H + ++ L   + 
Sbjct: 181 LSLGGEAAGVNGEAR--AESIRRLPE----ARARLRVIRPSEAELQAHTRLLEKLNPPSP 234

Query: 237 W 237
           W
Sbjct: 235 W 235


>gi|213968849|ref|ZP_03396990.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           tomato T1]
 gi|301384105|ref|ZP_07232523.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059179|ref|ZP_07250720.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           K40]
 gi|302135017|ref|ZP_07261007.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926452|gb|EEB60006.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           tomato T1]
          Length = 259

 Score =  167 bits (424), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 100/249 (40%), Positives = 143/249 (57%), Gaps = 15/249 (6%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+  +   RI+EIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSR--- 122
           +EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +  +D  D +R   
Sbjct: 68  NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCK 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++
Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLS 185

Query: 183 FGFKTNEDRFFKEEKKT-VPNISLLKRD-KPL-FTRITKEELDEHDKTIQTL----GKNA 235
                ++     E        I  L  D KP    R ++ EL EH+  + T+    G  A
Sbjct: 186 LAGNASDGNGSAEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTIAKATGAPA 245

Query: 236 IWDRYISSN 244
           +W + + + 
Sbjct: 246 LWVQMLEAG 254


>gi|91223500|ref|ZP_01258765.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|254228411|ref|ZP_04921837.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25]
 gi|262393546|ref|YP_003285400.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|269966277|ref|ZP_06180366.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
 gi|91191586|gb|EAS77850.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|151938999|gb|EDN57831.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25]
 gi|262337140|gb|ACY50935.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|269829192|gb|EEZ83437.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
          Length = 240

 Score =  167 bits (424), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 96/239 (40%), Positives = 144/239 (60%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R+  PEA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPEAVE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PL 118
           +HGITDEFL DKP ++S+  EF +F   + AE +AHNA FD GF++ E   ++ +     
Sbjct: 70  VHGITDEFLVDKPEYASVHQEFLEFI--KGAELVAHNAPFDTGFMDYEFGMLDPNIGKTD 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M   G
Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLFMT--G 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            Q +  F  N+     E  + +     LK       R + +EL+ H K ++ L  + IW
Sbjct: 186 GQTSLEFNANKQEGGVETIRRIEGRKALK-----VLRASADELEAHQKRLE-LVNDCIW 238


>gi|330963305|gb|EGH63565.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 259

 Score =  167 bits (424), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 100/249 (40%), Positives = 143/249 (57%), Gaps = 15/249 (6%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+  +   RI+EIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSR--- 122
           +EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +  +D  D +R   
Sbjct: 68  NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCK 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++
Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLS 185

Query: 183 FGFKTNEDRFFKEEKKT-VPNISLLKRD-KPL-FTRITKEELDEHDKTIQTL----GKNA 235
                ++     E        I  L  D KP    R ++ EL EH+  + T+    G  A
Sbjct: 186 LAGNASDGNGSAEGSSNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTIAKATGAPA 245

Query: 236 IWDRYISSN 244
           +W + + + 
Sbjct: 246 LWVQMLEAG 254


>gi|86136750|ref|ZP_01055328.1| DNA polymerase III, epsilon subunit [Roseobacter sp. MED193]
 gi|85826074|gb|EAQ46271.1| DNA polymerase III, epsilon subunit [Roseobacter sp. MED193]
          Length = 243

 Score =  167 bits (424), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 94/247 (38%), Positives = 144/247 (58%), Gaps = 21/247 (8%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVELL++  T  TF V++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPE-RSMPQEAFGVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             +DKP F+     F DF   +++  + HNA FD+ F+N EL R
Sbjct: 60  GPDLLEPPQKPEKGQVTLRDKPVFAKFGQAFLDFV--RDSRMVIHNASFDMKFLNFELDR 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    L   + +DTL++AR++ P S   L++LC+R+ I  S+R+ HGALLDS +L+DVY+
Sbjct: 118 MGLRTLPMEQALDTLAMARKRFPGSPATLDALCRRFQIDNSNRTLHGALLDSEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           + + GG Q +FG  TN         + V +     R  PL +R+T +E + H+  ++ +G
Sbjct: 178 E-LSGGRQPDFGLSTNAT---AGGGQVVEDWRPAPRHTPLPSRLTAKEAEAHEAFVEKMG 233

Query: 233 KNAIWDR 239
           ++A+W++
Sbjct: 234 EDALWNQ 240


>gi|237803575|ref|ZP_04591160.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331025557|gb|EGI05613.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 257

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/251 (40%), Positives = 145/251 (57%), Gaps = 19/251 (7%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+  +   RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR--- 122
           +EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   + ++D  D +R   
Sbjct: 68  NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGDQDRSDITRHCS 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M   G Q +
Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT--GGQTS 183

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTL----GK 233
                N        + +    S ++R     KP    R ++ EL EH+  + T+    G 
Sbjct: 184 LSLAGNASDGNGSGEGSGNRGSEIRRLPANRKPCRVIRASESELAEHEVRMSTIAKASGA 243

Query: 234 NAIWDRYISSN 244
           +A+W + + + 
Sbjct: 244 SALWVQMLEAG 254


>gi|331019245|gb|EGH99301.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 259

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 100/249 (40%), Positives = 143/249 (57%), Gaps = 15/249 (6%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+  +   RI+EIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSR--- 122
           +EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +  +D  D +R   
Sbjct: 68  NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCK 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++
Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLS 185

Query: 183 FGFKTNEDRFFKEEKKT-VPNISLLKRD-KPL-FTRITKEELDEHDKTIQTL----GKNA 235
                ++     E        I  L  D KP    R ++ EL EH+  + T+    G  A
Sbjct: 186 LAGNASDGNGSAEGSGNRGSEIRRLPADRKPCRVIRASESELAEHEVRMTTIAKATGAPA 245

Query: 236 IWDRYISSN 244
           +W + + + 
Sbjct: 246 LWVQMLEAG 254


>gi|28870866|ref|NP_793485.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28854115|gb|AAO57180.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 257

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 100/249 (40%), Positives = 143/249 (57%), Gaps = 15/249 (6%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+  +   RI+EIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 7   RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 65

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSR--- 122
           +EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +  +D  D +R   
Sbjct: 66  NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCK 123

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++
Sbjct: 124 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLS 183

Query: 183 FGFKTNEDRFFKEEKKT-VPNISLLKRD-KPL-FTRITKEELDEHDKTIQTL----GKNA 235
                ++     E        I  L  D KP    R ++ EL EH+  + T+    G  A
Sbjct: 184 LAGNASDGNGSAEGSGNRGSEIRRLPADRKPCRVIRASESELAEHEVRMTTIAKATGAPA 243

Query: 236 IWDRYISSN 244
           +W + + + 
Sbjct: 244 LWVQMLEAG 252


>gi|260753374|ref|YP_003226267.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552737|gb|ACV75683.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 234

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/240 (40%), Positives = 140/240 (58%), Gaps = 14/240 (5%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGL   N DR++EIG VEL++  +T  +F  +  P  R     A  +HG+
Sbjct: 1   MREIVFDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNPQ-RPMDAVAESIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D FL DKP F+    E   F   + +  +AHNA FD GF+N EL +     +  +R++D
Sbjct: 60  SDAFLADKPLFADKAQELLSFI--KLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR KHP +++ L++LC RYGI  SHR KHGALLD+ LL+ +Y++ + GG QI    
Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVE-LTGGRQIGMAL 176

Query: 186 KTNEDRFFKEEKKTVPN-ISLLKRDK-----PLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             N  +   + + +VPN +S L R+K     P     + +EL  H   I  +  N +W R
Sbjct: 177 DDNNGQ--SDGRLSVPNTVSGLPRNKKVKRQPRPHEASPQELLRHGAFIDKI-SNPVWRR 233


>gi|332141113|ref|YP_004426851.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551135|gb|AEA97853.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 239

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/249 (37%), Positives = 147/249 (59%), Gaps = 36/249 (14%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D K   RIIEIG VE+++   T   F V++ P GR    EA+++HGI
Sbjct: 1   MRQIVLDTETTGIDPKEGHRIIEIGCVEVVNRRLTGNHFHVYINP-GRHIEQEAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122
           T+EFL DKP+F+ +  EF +F   + A+ + HNA FDVGF++ E        ++PS    
Sbjct: 60  TNEFLTDKPTFAQVAQEFVNFI--KGAQLVIHNAPFDVGFMDHEF------GMEPSTKGV 111

Query: 123 -------IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                  ++DTL++AR+ HP  +N+L++LCKRYGI  SHR+ HGALLD+ +L+DVY+ M 
Sbjct: 112 ITNQICDVLDTLTLARQMHPGQKNNLDALCKRYGIDNSHRTLHGALLDAEILADVYLLMT 171

Query: 176 VGGSQINF----GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TI 228
            G +++      G +T+     + ++KT         +K    + + +EL +H+     +
Sbjct: 172 GGQTKLKLASSGGSETDSTAIRRVQRKT---------NKLKVIKASADELTQHEARLDIV 222

Query: 229 QTLGKNAIW 237
           +  G   +W
Sbjct: 223 EKAGGKCLW 231


>gi|254295485|ref|YP_003061508.1| DNA polymerase III subunit epsilon [Hirschia baltica ATCC 49814]
 gi|254044016|gb|ACT60811.1| DNA polymerase III, epsilon subunit [Hirschia baltica ATCC 49814]
          Length = 233

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/243 (38%), Positives = 150/243 (61%), Gaps = 18/243 (7%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGL +K+ DRIIE+GAVE++D   T R F   + P  R+ S + +++ GI
Sbjct: 1   MREIVFDTETTGLSAKDGDRIIELGAVEIVDLLPTGREFHRLIYPE-RQVSEDTIRITGI 59

Query: 66  TDEFLKDKPSFS--SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           TDE LK KP FS  S++ EF DF   +++  +AHNA+FD GF+N E++R+        R 
Sbjct: 60  TDEMLKGKPVFSDPSVYKEFLDFI--EDSPLVAHNAEFDRGFLNEEMRRVGGPDFPKERC 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL++AR K P +   L++LCKR+ I+++ R  H A++DS LL+ VY+++  GG   +F
Sbjct: 118 VDTLALAREKFPGASATLDALCKRFDISLAKRDVHTAVVDSQLLASVYLELR-GGRAHSF 176

Query: 184 GF----KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            F    +++ +  FK  ++        +R K L + +T+EE   H   I T  +  +W++
Sbjct: 177 EFENEGQSDAEVAFKRTQRR-------QRPKKLRSFLTEEENAAHQSFIATFDETPVWNK 229

Query: 240 YIS 242
            ++
Sbjct: 230 ILT 232


>gi|241761459|ref|ZP_04759547.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374366|gb|EER63863.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 234

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/240 (40%), Positives = 140/240 (58%), Gaps = 14/240 (5%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGL   N DR++EIG VEL++  +T  +F  +  P  R     A  +HG+
Sbjct: 1   MREIVFDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNPE-RPMDAVAESIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D FL DKP F+    E   F   + +  +AHNA FD GF+N EL +     +  +R++D
Sbjct: 60  SDAFLADKPLFADKAQELLSFI--KLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR KHP +++ L++LC RYGI  SHR KHGALLD+ LL+ +Y++ + GG QI    
Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVE-LTGGRQIGMAL 176

Query: 186 KTNEDRFFKEEKKTVPN-ISLLKRDK-----PLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             N  +   + + +VPN +S L R+K     P     + +EL  H   I  +  N +W R
Sbjct: 177 DDNNGQ--SDGRLSVPNTVSGLPRNKKVKRQPRPHEASPQELLRHGAFIDKI-SNPVWRR 233


>gi|163738000|ref|ZP_02145416.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           BS107]
 gi|163742604|ref|ZP_02149990.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161384189|gb|EDQ08572.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161388616|gb|EDQ12969.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           BS107]
          Length = 245

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/246 (38%), Positives = 145/246 (58%), Gaps = 19/246 (7%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVELL++  T  TF V++ P  R    +A K+HGI
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPQ-RSMPQDAFKVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             +DKP F+ +  +F DF   ++++ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQQPGPGAVTLRDKPVFAKVGQKFLDFV--RDSKMVIHNAAFDMKFLNAELDW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    L   + +DTL+IAR++ P S   L++LC+R+ I  S+R+ HGALLDS +L+DVY+
Sbjct: 118 MGLPKLPMDQAVDTLAIARKRFPGSPATLDALCRRFNIDNSNRTLHGALLDSEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           + ++GG Q +FG   + D+       T  +     R  PL +R+T++E + H   +  +G
Sbjct: 178 E-LIGGRQPDFGLSASNDKSSSGSVVTD-DWRPTARPSPLPSRLTEQEQEAHANFVAKMG 235

Query: 233 KNAIWD 238
             A+W+
Sbjct: 236 DAALWN 241


>gi|149908875|ref|ZP_01897535.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
 gi|149808149|gb|EDM68090.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
          Length = 245

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/239 (40%), Positives = 146/239 (61%), Gaps = 19/239 (7%)

Query: 8   RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IVFD ETTG++          R+IEIG +EL++   T RT+ V++ P+ R   PEA+ 
Sbjct: 14  RVIVFDTETTGMNMGAGGVHIGHRVIEIGCIELINRRPTGRTYHVYIKPD-RLVDPEAIA 72

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PL-- 118
           +HGITDEFL+DKPSF++I  EF  F     AE +AHNA FD  F++ E + +NK  P   
Sbjct: 73  VHGITDEFLQDKPSFATIADEFIAFI--VGAELVAHNASFDTNFLDHEFRLLNKGLPATK 130

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +  +I DTL+IA++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 131 EICKITDTLAIAKKLFPGKRNNLDVLCTRYGIDNSHRTLHGALLDAEILADVYLFMTGGQ 190

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           +++N   + + +      ++   + + LK       + T +EL  HD+ +  +G +A+W
Sbjct: 191 TKLNLS-QDSANSQGGGIRRVAASRAPLK-----VVQATDDELKAHDERLGIVG-DALW 242


>gi|71276291|ref|ZP_00652569.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Dixon]
 gi|71898480|ref|ZP_00680652.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|170730488|ref|YP_001775921.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M12]
 gi|71162899|gb|EAO12623.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Dixon]
 gi|71731793|gb|EAO33852.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|167965281|gb|ACA12291.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 239

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/243 (40%), Positives = 143/243 (58%), Gaps = 15/243 (6%)

Query: 4   KNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +NK R+IV D ETTGL+ SK +RI+EIGAVELLD   +   F  +L P+    S  A ++
Sbjct: 2   RNKKRQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPDVSFESG-AQEV 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119
            G+T EFL DKP FS I  EF  + N   AE I HNA FD+GF++ EL R+        D
Sbjct: 61  TGLTMEFLADKPEFSMIADEFLAYIN--GAELIIHNAAFDLGFLDYELSRLGSQYGKITD 118

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            + ++DTL +AR ++P  RN L++LCKR G+  +HR  HGALLD+ +L+DVYI +  G  
Sbjct: 119 RASVLDTLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTCGQE 178

Query: 180 QINFGF-KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--- 235
           +I F   +++           +P++ L    +P    +++ EL+ H+  +  L K A   
Sbjct: 179 EIGFALPESSCGGVDAASAAFMPDVLL---TRPCVV-VSQSELEAHEARLAKLRKIAGHV 234

Query: 236 IWD 238
           +WD
Sbjct: 235 LWD 237


>gi|85707524|ref|ZP_01038599.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius sp. 217]
 gi|85667957|gb|EAQ22843.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius sp. 217]
          Length = 231

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/233 (40%), Positives = 141/233 (60%), Gaps = 8/233 (3%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + ++ DRI+EIGAVEL ++  T RTF  ++ P  R     A  +HG+
Sbjct: 1   MREIVLDTETTGFEPESGDRIVEIGAVELYNHMPTGRTFHKYINPQ-RAMPEAAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL++KP F+ I  EF DF    +A+ + HNA FD+ F+NAEL  +    L   + ID
Sbjct: 60  GDDFLRNKPLFAEIAQEFLDFV--LDAKLVIHNAAFDMKFLNAELGWLKLPHLPWEQAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR+K P S   L++LC+R+ I  S R+ HGALLDS +L++VY++ ++GG Q +F  
Sbjct: 118 TLAIARQKFPGSPASLDALCRRFQIDNSARTLHGALLDSEILAEVYLE-LIGGRQPDFAL 176

Query: 186 KTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            +       +   T P++     R  PL  R+T+ E   H   +  +G+ A+W
Sbjct: 177 SSTSSTRSSD--MTEPDVWRPHPRPTPLAPRLTESEAAAHQAFVARMGEAALW 227


>gi|59712542|ref|YP_205318.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114]
 gi|59480643|gb|AAW86430.1| DNA polymerase III epsilon subunit [Vibrio fischeri ES114]
          Length = 243

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/239 (40%), Positives = 148/239 (61%), Gaps = 16/239 (6%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IV D ETTG++       +  RI+EIGAVE+++   T   F V++ P+ R    EA+ 
Sbjct: 10  RIIVLDTETTGMNFSGGPVYEGHRIVEIGAVEIINRKLTGNHFHVYIKPD-RLIDLEAID 68

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--DPLD 119
           +HGITDEFL DKP +  I  EF +F   + AE +AHNA FDVGF++ E  ++NK     D
Sbjct: 69  VHGITDEFLYDKPEYKDIHDEFLEFI--KGAELVAHNAPFDVGFMDYEFSKLNKLIGTTD 126

Query: 120 P-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              +I DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ +M GG
Sbjct: 127 QYCKITDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYL-LMTGG 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            Q +  F + E+    +E +T+  ++  ++   +  R T +EL+ H+K +  +G   +W
Sbjct: 186 -QTSLSFSSGENSSDSDE-ETIKRLNSGRKGLKVL-RATADELEAHEKRLDIVGDACLW 241


>gi|332993503|gb|AEF03558.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2]
          Length = 238

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 93/239 (38%), Positives = 142/239 (59%), Gaps = 16/239 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D K   R+IEIG VEL++   T   F V++ P GR+   EA+ +HGI
Sbjct: 1   MRQIVLDTETTGIDPKEGHRVIEIGCVELVNRKLTGNHFHVYINP-GRQIEQEAIDVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD----PLDPS 121
           T+EFL DKP+F  +  +F +F   + A+ + HNA FDVGF++ E     K       D  
Sbjct: 60  TNEFLTDKPTFRDVAEDFVNFI--RGAQLVIHNAPFDVGFMDHEFGMEPKTRGVITKDIC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL++AR+ HP  +N+L++LCKRYGI  SHR  HGALLD+ +L+DVY+ M  G +++
Sbjct: 118 SVLDTLAVARKMHPGQKNNLDALCKRYGIDNSHRELHGALLDAEILADVYLLMTGGQTKL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAIW 237
           N   K + +      ++   N + LK       + + +EL +H+     ++  G   +W
Sbjct: 178 NLASKGSGENQSDALRRLNRNGNKLK-----VIKASADELAQHESRLDIVEKAGGKCLW 231


>gi|89052685|ref|YP_508136.1| DNA polymerase III, epsilon subunit [Jannaschia sp. CCS1]
 gi|88862234|gb|ABD53111.1| DNA polymerase III epsilon subunit [Jannaschia sp. CCS1]
          Length = 231

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 93/237 (39%), Positives = 138/237 (58%), Gaps = 10/237 (4%)

Query: 7   MRKIVFDIETTGL---DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           MR+IV D ETTGL   D    RI+EIGAVE+ +   T +T+  ++ P  R    EA  +H
Sbjct: 1   MREIVLDTETTGLNPYDMPRHRIVEIGAVEIFNQVPTGKTYHQYIQPE-RDMPKEAFDVH 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI ++FL DKP F+ I  +F DF      + + HNA+FD+ F+NAEL+   K  L   + 
Sbjct: 60  GIGEDFLADKPIFADIAQDFLDFVG--GDQMVIHNAEFDMRFLNAELEWAGKHALPNDQA 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL IAR+K P S   L++LC+R+GI  S R KHGALLDS +L++VY++ + GG Q +F
Sbjct: 118 LDTLKIARQKFPGSPASLDALCRRFGIDNSAREKHGALLDSEILAEVYLE-LTGGKQPDF 176

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           G   ++    +++ +   N     R   L TR++  E   H   +  LG   +W ++
Sbjct: 177 GLSQSKSTPTQQQDE---NWRPRPRPSALPTRLSDVEKAAHAAFVDALGDQTVWSKF 230


>gi|15838748|ref|NP_299436.1| DNA polymerase III subunit epsilon [Xylella fastidiosa 9a5c]
 gi|9107294|gb|AAF84956.1|AE004030_2 DNA polymerase III, epsilon chain [Xylella fastidiosa 9a5c]
          Length = 239

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/246 (40%), Positives = 141/246 (57%), Gaps = 21/246 (8%)

Query: 4   KNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +NK R+IV D ETTGL+ SK +RI+EIGAVELLD   +   F  +L P+    S  A ++
Sbjct: 2   RNKKRQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPDVSFESG-AQEV 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119
            G+T EFL DKP FS I  EF  + N   AE I HNA FD+GF++ EL R+        D
Sbjct: 61  TGLTMEFLADKPEFSMIADEFLAYIN--GAELIIHNAAFDLGFLDYELSRLGSQYGKITD 118

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            + ++DTL +AR ++P  RN L++LCKR G+  +HR  HGALLD+ +L+DVYI +  G  
Sbjct: 119 RASVLDTLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQE 178

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR----ITKEELDEHDKTIQTLGKNA 235
           +I F          +  +  V   S+      L TR    +++ EL+ H+  +  L K A
Sbjct: 179 EIGFALP-------ESSRGGVDAASVAFMPDVLLTRPCVVVSQSELEAHEARLAKLRKIA 231

Query: 236 ---IWD 238
              +WD
Sbjct: 232 GHVLWD 237


>gi|331007390|ref|ZP_08330576.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989]
 gi|330418798|gb|EGG93278.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989]
          Length = 239

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/247 (39%), Positives = 143/247 (57%), Gaps = 28/247 (11%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ SK  RIIEIG VEL +   T R +  ++ P  R+   +A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPSKGHRIIEIGCVELENRKLTGRHYHQYIQPE-REIEAQAMEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPS 121
           T+E+LK KP+F  I  EF  F +   AE I HNA FDVGFIN EL +      ++     
Sbjct: 60  TNEYLKGKPTFVQIMDEFMAFVD--GAELIIHNAPFDVGFINNELAKYGDKKYQNITHYC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +IDTL +AR+KHP  +N+L++LCKRYG+  S R  HGALLDS +L+DVY+ +M GG + 
Sbjct: 118 GVIDTLVMARQKHPGQKNNLDALCKRYGVDNSQRDLHGALLDSEILADVYL-LMTGGQRA 176

Query: 182 NFGFKTNEDRFFKEEKKT-------VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233
                 + +      + T       VPN+ +++         + EEL +H++ +  + K 
Sbjct: 177 LSLSSASSEDDSGSRQVTGIRRLAEVPNLPIIQ--------ASPEELAQHEQKLAAIDKA 228

Query: 234 ---NAIW 237
                +W
Sbjct: 229 SQGQCVW 235


>gi|254462819|ref|ZP_05076235.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206679408|gb|EDZ43895.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 224

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/229 (39%), Positives = 137/229 (59%), Gaps = 8/229 (3%)

Query: 12  FDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D ETTG D  + DRI+EIGAVEL++   T RT+  ++ P  R    +A ++HG+ D+FL
Sbjct: 1   MDTETTGFDPQQGDRIVEIGAVELINQMPTGRTYHQYINPE-RAMPDDAFQVHGLGDDFL 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +DKP F  I  EF DF  +     + HNA FD+ F+NAEL  +N   L   + +DTL+IA
Sbjct: 60  RDKPVFKQIAQEFLDFVKDDTM--VIHNASFDMKFLNAELGWLNMKQLPMEQALDTLAIA 117

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R++ P S   L++LC+R+ I  S+R+ HGALLDS +L++VY++++ GG Q          
Sbjct: 118 RKRFPGSPASLDALCRRFNIDNSNRTLHGALLDSEILAEVYLELL-GGRQPGLVLANTGG 176

Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                 ++T       KR  PL +RIT+EE   H   ++ LG++A+W +
Sbjct: 177 SASGGSEET---WRASKRPTPLPSRITEEEAKAHTAFVEKLGEDALWSK 222


>gi|294675627|ref|YP_003576242.1| DNA polymerase III subunit epsilon [Rhodobacter capsulatus SB 1003]
 gi|294474447|gb|ADE83835.1| DNA polymerase III, epsilon subunit [Rhodobacter capsulatus SB
           1003]
          Length = 231

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/180 (46%), Positives = 123/180 (68%), Gaps = 4/180 (2%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + S+  RI+EIGAVEL+++  T RT+  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGFEPSEGHRIVEIGAVELMNHVPTGRTYHQYINPE-RAMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F +I  +F DF  + +++ + HNA FD+ F+NAEL  + K  L   R +D
Sbjct: 60  GDDFLRDKPKFGAIAQDFLDFIGD-DSKLVIHNAAFDMKFLNAELGWVQKPLLPMDRALD 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++ARRK P S   L++LC+R+GI  S R+ HGALLDS +L++VY++ ++GG Q  FG 
Sbjct: 119 TLAMARRKFPGSPATLDALCRRFGIDNSARTLHGALLDSEILAEVYLE-LIGGRQPGFGL 177


>gi|254786149|ref|YP_003073578.1| DNA polymerase III subunit epsilon [Teredinibacter turnerae T7901]
 gi|237685417|gb|ACR12681.1| DNA polymerase III, epsilon subunit [Teredinibacter turnerae T7901]
          Length = 239

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/242 (40%), Positives = 143/242 (59%), Gaps = 19/242 (7%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+  +  RIIEIG VEL +   T + F  ++ P+ R+    A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPEQGHRIIEIGCVELFNRKLTGKHFHQYIRPD-REIDEGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122
           T+EFL DKP F+ I  +F  F    +AE + HNA FDVGF++ EL+ +N+  L P R   
Sbjct: 60  TNEFLADKPVFAQIADDFLTFIG--DAELVIHNAPFDVGFLDHELRLLNRG-LAPIRERC 116

Query: 123 -IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL  ARRKHP  +N+L++LCKRY +  S R  HGALLD+ +L+DVY+ M  G + +
Sbjct: 117 GVLDTLVYARRKHPGQKNNLDALCKRYMVDNSQRDLHGALLDAEILADVYLAMTGGQTAL 176

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDKTIQTL----GKNA 235
             G +  +      E++ +     L  D+P     R   EE++ H   + TL    G N 
Sbjct: 177 ALGGQQGDGSGGDGEEQIIR----LSADRPRLKVLRANDEEIEAHKAKLATLDKASGGNC 232

Query: 236 IW 237
           +W
Sbjct: 233 LW 234


>gi|163732957|ref|ZP_02140401.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149]
 gi|161393492|gb|EDQ17817.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149]
          Length = 228

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/232 (41%), Positives = 147/232 (63%), Gaps = 8/232 (3%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D ++ DRI+EIGAVEL+ +  T +T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGKTYHQYINPE-RMMPDEAFQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL+DKP F+ +   F DF    +A+ + HNA FD+ F+NAEL+ +N   +   + ID
Sbjct: 60  GDEFLRDKPKFAEVGQAFLDFIG--DAKLVIHNAAFDIKFLNAELKWMNLPQIPWEQAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR++ P S   L++LC+R+GI  + R+ HGALLDS +L++VY++ ++GG Q +FG 
Sbjct: 118 TLAIARKRFPGSPASLDALCRRFGIDNASRTLHGALLDSEILAEVYLE-LIGGRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                   K    T  + +   R  PL +R+T+EE   H + +  LG +A+W
Sbjct: 177 SNIPQ---KSAGDTSVDWTPRPRPTPLPSRMTEEEAAAHAEFVAKLGDDAVW 225


>gi|119476004|ref|ZP_01616356.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2143]
 gi|119450631|gb|EAW31865.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2143]
          Length = 236

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/234 (42%), Positives = 140/234 (59%), Gaps = 14/234 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTGL+ S+  RIIEIG VEL+D   T R +  ++ P  R+    A+++HGI
Sbjct: 1   MRQVVLDTETTGLEPSQGHRIIEIGCVELVDRKLTGRHYHQYINPK-REIDTGAMEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSR-- 122
           T+EFL DKP FS +  EF DF     AE I HNA FD+GFIN+E + ++ K P       
Sbjct: 60  TNEFLADKPLFSQVAQEFLDFVT--GAELIIHNAPFDIGFINSEFKLLDSKSPGTMESYC 117

Query: 123 -IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR+KHP  RN L++LC RY +  S R  HGALLDS +L+DVY+ M  G +++
Sbjct: 118 GVVDTLVMARQKHPGQRNSLDALCSRYEVDNSQRDLHGALLDSEILADVYLLMTGGQTKL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDK-PL-FTRITKEELDEHDKTIQTLGK 233
                 NE+     +     NI  L  ++ PL       EEL EH++ +Q + K
Sbjct: 178 LLAGDDNEEGSGHSDN----NIRRLSTNRQPLKIILANDEELAEHEERMQKIDK 227


>gi|293603370|ref|ZP_06685798.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292818280|gb|EFF77333.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 239

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/240 (39%), Positives = 134/240 (55%), Gaps = 19/240 (7%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTGLD ++  RI+EIG VE+++   T     ++L P+ R + PEAL +HG+
Sbjct: 1   MRQIIFDTETTGLDPAQGHRIVEIGCVEMVNRMSTGNNLHIYLNPD-RDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ +  EF  F   Q AE IAHNA FDV F NAEL +  + P+      +
Sbjct: 60  TTEFLSDKPRFADVVDEFVKFI--QGAELIAHNAAFDVKFFNAELAKTGRGPITEYCETV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L  AR   P  RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M  G   +  
Sbjct: 118 TDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTL----GKNAIW 237
               N       +      I L K D    +  +   +EL EH+  +  L    G   +W
Sbjct: 178 DVDDN-------DGAGSDGIVLAKFDASGLVVIKAADDELAEHEAYLAALDKSVGGECVW 230


>gi|94496604|ref|ZP_01303180.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58]
 gi|94423964|gb|EAT08989.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58]
          Length = 230

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/232 (38%), Positives = 134/232 (57%), Gaps = 7/232 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTG D +  DR++EIG +EL++   T RTF  +  P  R     A  +HG+
Sbjct: 1   MREIIFDTETTGFDPASGDRMVEIGCIELVNRVPTGRTFHAYYHPE-RDMPAAAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL   P FS    E  DF   +++  +AHNA+FD GF+N EL       +   R+ID
Sbjct: 60  SADFLAKHPVFSLGALELLDFL--EDSPLVAHNARFDFGFLNHELTLCGHPQVGMHRMID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T++IAR+ HP +++ L++LC RYGI  SHR KHGALLD+ LL+ +YI+ + GG QI  G 
Sbjct: 118 TVAIARQLHPGAKHSLDALCTRYGIDRSHRVKHGALLDAELLAQLYIE-LTGGRQIGLGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
              E +     + T   +    R   +F   + +EL+ H   + TL +  +W
Sbjct: 177 AQEEAKEIVRVELTESPVVRPVRPARVFM-ASAQELERHAAFVATLDRP-LW 226


>gi|119898345|ref|YP_933558.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
 gi|119670758|emb|CAL94671.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 239

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/230 (41%), Positives = 136/230 (59%), Gaps = 12/230 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD +  DR+IEIG VEL++ S T R F V++ P+ R    EA+ +HGI
Sbjct: 1   MRQIVLDTETTGLDWRTGDRVIEIGCVELVNRSLTGRHFHVYINPD-RGIDAEAVAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T+EFL DKP F+ I   F DF   ++AE + HNA FDVGF+N EL  + +  LD   + +
Sbjct: 60  TEEFLADKPRFAGIVEAFEDFV--RDAELVIHNANFDVGFLNCELGLLGRPKLDVLCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +A+ ++P  +  L++LC RY I   HR+ HGALLD+ LL++VY+ M  G  Q + 
Sbjct: 118 IDTLRMAKEQNPGKKASLDALCDRYEIDNGHRTLHGALLDAELLAEVYLAMTRG--QESL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
               +E    + E   +P    + R      R T+ E + H   +  + K
Sbjct: 176 MIALDEPAPGQVETDGLP----VMRVGVKVVRATEAECEAHAANLADIAK 221


>gi|292493431|ref|YP_003528870.1| DNA polymerase III subunit epsilon [Nitrosococcus halophilus Nc4]
 gi|291582026|gb|ADE16483.1| DNA polymerase III, epsilon subunit [Nitrosococcus halophilus Nc4]
          Length = 242

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/240 (39%), Positives = 138/240 (57%), Gaps = 14/240 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ K   RIIEIG VEL++  +T +TF  +L P  R+    ALK+HG+
Sbjct: 1   MRQIILDTETTGLEPKEGHRIIEIGGVELINRRRTGQTFHCYLNPE-RRVDEGALKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS---R 122
           ++EFL DKP F  +  EF  F  E  AE + HNA FDVGF++ EL  +       S   +
Sbjct: 60  SNEFLSDKPRFVEVAEEFLAFIRE--AELVIHNAPFDVGFLDHELSLLGSQWGKVSLYCQ 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR++HP  +N L++LCKRYG+  S R  HGALLD+ +L+ VY+ M  G + ++
Sbjct: 118 VLDTLVLARQRHPGQKNSLDALCKRYGVDNSRRDLHGALLDAEILAGVYLAMTGGQASLS 177

Query: 183 F-GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237
             G+   + +    E K  P  +  KR      R ++EE   H   +  +    G   +W
Sbjct: 178 LRGYGGEDSQSQPGEGKYRPVAA--KRPPLKVVRASEEERSAHQARLAAIDKVSGGACLW 235


>gi|90021666|ref|YP_527493.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40]
 gi|89951266|gb|ABD81281.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40]
          Length = 238

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/239 (39%), Positives = 138/239 (57%), Gaps = 13/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S+  RIIEIG VEL++   T R +  ++ P  R+    A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPSQGHRIIEIGCVELINRKLTGRHYHQYIKPE-REIDEGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122
           T+EFL DKP F  I  EF  F +   AE + HNA FDVGF+N E   + +      D   
Sbjct: 60  TNEFLADKPVFKDIADEFMAFVD--GAELVIHNAPFDVGFLNHEFNLLGRGSTVINDRCS 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL++AR KHP  +N+L++LCKRYG   S R  HGALLD+ +L+DVY+ M  G + + 
Sbjct: 118 ILDTLALARNKHPGQKNNLDALCKRYGADNSARDLHGALLDAEILADVYLLMTGGQTNLA 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237
            G          +  + +  +S  ++  P+  R + EEL  H+K +  +    G   +W
Sbjct: 178 LG-GAGSSSGMDDGGEELVRVSADRKPLPII-RASAEELALHEKKLAEIDKASGGECLW 234


>gi|163854939|ref|YP_001629237.1| DNA polymerase III subunit epsilon [Bordetella petrii DSM 12804]
 gi|163258667|emb|CAP40966.1| DNA polymerase III, epsilon chain [Bordetella petrii]
          Length = 241

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/238 (39%), Positives = 137/238 (57%), Gaps = 15/238 (6%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTGLD S+  RI+EIG VE+++   T     ++L P+ R + PEAL +HG+
Sbjct: 1   MRQIIFDTETTGLDPSQGHRIVEIGCVEIVNRVVTGNHLHIYLNPD-RDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ +  +F +F   Q AE IAHNA FDV F NAEL  I +  L    + +
Sbjct: 60  TTEFLADKPRFADVAQQFLEFI--QGAELIAHNAAFDVKFFNAELSMIGRGDLSQYCALV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L  AR  +P  RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M  G   +  
Sbjct: 118 TDSLQHARTLYPGKRNSLDALCDRHGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237
                             + S+L    P+    T +EL EH++ + +L    G   +W
Sbjct: 178 DVDDASQGGGAGIALGAFDSSVL----PVLAA-TADELAEHEEYLASLDKSVGGACVW 230


>gi|42520014|ref|NP_965929.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|99034422|ref|ZP_01314429.1| hypothetical protein Wendoof_01000768 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|42409751|gb|AAS13863.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 231

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/239 (39%), Positives = 145/239 (60%), Gaps = 11/239 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           ++K+R+IV D ETTGLD+++  RIIEIG VEL++   T + F  +L P  R     + K+
Sbjct: 2   ESKLREIVLDTETTGLDTESGHRIIEIGCVELINRIPTGKVFHRYLNPE-RDIPYHSFKI 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI++EFL+DKP FS +  EF DF +  N   + HNA+FDV F+N EL ++N   +   R
Sbjct: 61  HGISEEFLEDKPLFSDVALEFLDFIS--NDILVIHNAEFDVKFLNMELSKLNARLISSDR 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+K   S   LN+LCKR+ I++ +R  HGAL+D+ LL+ VY+++  G     
Sbjct: 119 VLDTLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTFL 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
           F  + N+D      +  V N++      P       EE+DEH K +  +  N +W++YI
Sbjct: 179 FDNECNQDSNSTFVQHKVRNLT------PREHLPNSEEIDEHKKLLDKIN-NTLWNKYI 230


>gi|330503134|ref|YP_004380003.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
 gi|328917420|gb|AEB58251.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
          Length = 252

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/235 (40%), Positives = 133/235 (56%), Gaps = 12/235 (5%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+  +   RIIEIG VELL    T R F V+L P+ R+    A+ +HGIT
Sbjct: 9   RYVVLDTETTGMPVTDGHRIIEIGCVELLGRRLTGRHFHVYLNPD-REIDEGAIAVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPSR 122
           +E++ DKP F  +  EF++F   + A+ I HNA FDVGFIN E   + +    D  D   
Sbjct: 68  NEYVADKPRFREVADEFYEFI--KGAQLIIHNAAFDVGFINNEFALLGQSERADVSDYCS 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR +HP  RN L++LCKRYG+  S+R  HGALLDS +L+DVY+ M   G Q N
Sbjct: 126 VLDTLMMARERHPGQRNSLDALCKRYGVDNSNRELHGALLDSEILADVYLAMT--GGQTN 183

Query: 183 FGFKTNEDRFFKEEKKTVPNISLL--KRDKPLFTRITKEELDEHDKTIQTLGKNA 235
                +        ++    I  L   R +    R ++EEL  H   +  + K+A
Sbjct: 184 LSLAGDGADGDGSGRQQATPIRRLDPSRARTRVIRASEEELAAHMARLAVIEKSA 238


>gi|315634676|ref|ZP_07889960.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|315476624|gb|EFU67372.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 253

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/251 (38%), Positives = 150/251 (59%), Gaps = 21/251 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           I+ N  R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ PN R   
Sbjct: 3   IQINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPN-RPVD 61

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA+K+HGITDE L DKP FS I +EF ++   + AE + HNA FDVGF++ E  ++N  
Sbjct: 62  PEAIKVHGITDEMLADKPDFSQIANEFIEYI--KGAELLIHNAPFDVGFMDYEFAKLNL- 118

Query: 117 PL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           P+   D  ++ DTL++AR+ +P  +N+L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 119 PIKTNDICQVTDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLA 178

Query: 174 MMVGGSQINFGFKTNEDRFFKE-EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           M  G + +   F  NE    ++  ++ + +      +  L T  T+EEL  H + ++ + 
Sbjct: 179 MTGGQTSL---FDENESEIIQQVNEQQIQSAVAFSHNLRLLTP-TEEELQAHLEYLKLIN 234

Query: 233 K----NAIWDR 239
           K    N +W R
Sbjct: 235 KKSKDNCLWTR 245


>gi|58696733|ref|ZP_00372277.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58698126|ref|ZP_00373049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225629990|ref|YP_002726781.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi]
 gi|58535372|gb|EAL59448.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58537085|gb|EAL60207.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225591971|gb|ACN94990.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi]
          Length = 231

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 145/239 (60%), Gaps = 11/239 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           ++K+R++V D ETTGLD+++  RIIEIG VEL++   T + F  +L P  R     + K+
Sbjct: 2   ESKLRELVLDTETTGLDTESGHRIIEIGCVELINRIPTGKVFHRYLNPE-RDIPYHSFKI 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI++EFL+DKP FS +  EF DF +  N   + HNA+FDV F+N EL ++N   +   R
Sbjct: 61  HGISEEFLEDKPLFSDVALEFLDFIS--NDILVIHNAEFDVKFLNMELSKLNAGLISSDR 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+K   S   LN+LCKR+ I++ +R  HGAL+D+ LL+ VY+++  G     
Sbjct: 119 VLDTLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTFL 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
           F  + N+D      +  V N++      P       EE+DEH K +  +  N +W++YI
Sbjct: 179 FDNECNQDSNSTFVQHKVRNLT------PREHSPNSEEIDEHKKLLDKIN-NTLWNKYI 230


>gi|317402511|gb|EFV83078.1| DNA polymerase subunit III [Achromobacter xylosoxidans C54]
          Length = 240

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 94/240 (39%), Positives = 135/240 (56%), Gaps = 19/240 (7%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTGLD ++  RI+EIG VEL++   T     ++L P+ R + PEAL +HG+
Sbjct: 1   MRQIIFDTETTGLDPAQGHRIVEIGCVELVNRMATGNNLHIYLNPD-RDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ +  EF  F   Q AE IAHNA FDV F NAEL +  + P+    + +
Sbjct: 60  TTEFLSDKPRFAEVADEFVKFI--QGAELIAHNAAFDVKFFNAELAKTGRGPITEYCATV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L  AR   P  RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M  G   +  
Sbjct: 118 TDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDKTIQTL----GKNAIW 237
               N       +      + L + D       + ++ EL EH+  +  L    G   +W
Sbjct: 178 DVDDN-------DTGAGGGVVLARFDASGLPVVKASEAELAEHETYLAALDKSVGGECVW 230


>gi|300312711|ref|YP_003776803.1| DNA polymerase III subunit epsilon [Herbaspirillum seropedicae
           SmR1]
 gi|300075496|gb|ADJ64895.1| DNA polymerase III, epsilon subunit, protein [Herbaspirillum
           seropedicae SmR1]
          Length = 244

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/238 (38%), Positives = 136/238 (57%), Gaps = 15/238 (6%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL  +N +RI+EIG VE+L+   + +    ++ P  R +   AL +HG+
Sbjct: 1   MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPE-RDSEEGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123
           T EFL DKP+F  I +EF D+   + A+ I HNA FDVGF++AEL  +   P     I  
Sbjct: 60  TTEFLADKPTFKQIAAEFLDYV--RGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +D+L +A+  HP  RN L++LC RYGI+ +HR  HGALLD+ LL++VY+ M  G + +  
Sbjct: 118 VDSLQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237
                ED    E K     + L    + +    ++EEL  H+  +  L K A    +W
Sbjct: 178 DLGAEEDVSEGEGK-----LELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVW 230


>gi|183601084|ref|ZP_02962577.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827]
 gi|188019425|gb|EDU57465.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827]
          Length = 253

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/244 (39%), Positives = 147/244 (60%), Gaps = 22/244 (9%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P+ R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119
           HGI+DEFL+DKP F+ I  EF +F   + AE I HNA FD+GF++ E  ++NKD     D
Sbjct: 66  HGISDEFLQDKPVFADIADEFIEFI--RGAELIIHNAPFDIGFMDYEFSKLNKDIPPTAD 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR+  P  RN+L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCQITDSLVMARQIFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILADVYLAMTGGQT 183

Query: 180 QINFGFK--TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GK 233
            + F  +  T+ + + +E ++    +S L+         T EEL EH+K +  +    GK
Sbjct: 184 SLAFSMEADTSNESYVEEVQRIDRPVSGLR-----VLYATDEELIEHEKRLDIVDKKGGK 238

Query: 234 NAIW 237
             +W
Sbjct: 239 PCLW 242


>gi|144899676|emb|CAM76540.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 228

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/234 (40%), Positives = 141/234 (60%), Gaps = 10/234 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D     RI+EIG VEL ++  T + +  ++ P  R    EA K+HG+
Sbjct: 1   MREIVLDTETTGFDPLTGHRIVEIGCVELFNHLPTGKVYHQYVNPE-RDMPEEAFKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +++FL DKP F+ I ++F DF    +A  + HNA+FD+ FINAEL R+   PL  SR ID
Sbjct: 60  SEQFLSDKPVFAEIVADFMDFIG--DAILVIHNAEFDMRFINAELSRLGFQPLPMSRSID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+++AR+K P ++ +L++LC+R+ I  +HRS HGALLDS LL++VY++ ++GG Q     
Sbjct: 118 TVAMARKKFPGAQANLDALCRRFEIDNTHRSFHGALLDSELLAEVYLQ-LIGGRQPG--- 173

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                     +    P +  +KR+ P       EEL+ H   +  L K A+W R
Sbjct: 174 LELGLLGGNGKGGGGPVLERVKRE-PRPHAALPEELEAHAAFVGKL-KKALWLR 225


>gi|330810139|ref|YP_004354601.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378247|gb|AEA69597.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 253

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/248 (38%), Positives = 138/248 (55%), Gaps = 15/248 (6%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+  +   RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 4   RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPSR 122
           +EFL  KP F+ +  EF++F   Q A+ I HNA FDVGFIN E   + +    D      
Sbjct: 63  NEFLVGKPRFAEVADEFFEFI--QGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++
Sbjct: 121 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLS 180

Query: 183 FGFKTNEDRFFKE-EKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKN----A 235
                ++     E        I  L  D+      R ++ +L EH   ++ + K+    A
Sbjct: 181 LAGNASDGNGTGEGSGNQATEIRRLPADRQPSRIIRASESDLAEHAARLEAIAKSAGAPA 240

Query: 236 IWDRYISS 243
           +W +   S
Sbjct: 241 LWTQLAES 248


>gi|262404569|ref|ZP_06081124.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
 gi|262349601|gb|EEY98739.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
          Length = 247

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 85/189 (44%), Positives = 123/189 (65%), Gaps = 12/189 (6%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R+   EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118
           +HGITDEFL+DKP +  +  EF DF   + AE +AHNA FDVGF++ E  ++    +   
Sbjct: 70  VHGITDEFLRDKPEYKQVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGSVIKTT 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKT 187
           + + F   T
Sbjct: 188 TSLQFSAST 196


>gi|114798147|ref|YP_758739.1| DNA polymerase III subunit epsilon [Hyphomonas neptunium ATCC
           15444]
 gi|114738321|gb|ABI76446.1| DNA polymerase III, epsilon subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 232

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 92/235 (39%), Positives = 144/235 (61%), Gaps = 13/235 (5%)

Query: 6   KMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++R+I FD ETTGL+ ++ DRIIEIGAVE++++  T +TF+  + P G   S   +++ G
Sbjct: 4   RVREIAFDTETTGLNPNEGDRIIEIGAVEMINHIPTGKTFRRLINP-GMAVSEATIRITG 62

Query: 65  ITDEFLKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           ITD+ L+DKP F    I   F +F    +A  +AHNA FD GF+N ELQR  +D +   R
Sbjct: 63  ITDDHLRDKPPFEHPDIIDAFLEFTG--DAIIVAHNASFDRGFLNMELQRCGRDIIPEDR 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +DT+ +AR+++P +   L++LCKR+ I++  R+ HGALLDS LL+ VY++++ GG    
Sbjct: 121 WVDTVQMARKRYPGAPASLDALCKRFDISLESRTFHGALLDSQLLASVYLELL-GGRARA 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           F F+         E    P  +  +R  PL + +T  E   H + ++ LG +A+W
Sbjct: 180 FSFEPT----LGGEGYQRP--AARQRPAPLASLVTDAERAAHAELVEKLGADALW 228


>gi|114571517|ref|YP_758197.1| DNA polymerase III subunit epsilon [Maricaulis maris MCS10]
 gi|114341979|gb|ABI67259.1| DNA polymerase III, epsilon subunit [Maricaulis maris MCS10]
          Length = 230

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/232 (40%), Positives = 133/232 (57%), Gaps = 9/232 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD +  DR+ E+G VE++D+  T +TF  ++ P  R    E +++ G+
Sbjct: 1   MREIVFDTETTGLDPNTGDRVTELGCVEIIDFIPTGKTFHAYVNPQ-RSVPKEVVEITGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F  +  +F +F    +A  +AHNA FD GFIN EL R+  D     R  D
Sbjct: 60  TTEFLADKPLFDEVGPQFVEFVG--DATMVAHNAPFDRGFINMELARLGLDIYPDDRFKD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T  IAR K P S   L++LCKR+ I++  R KHGAL+DS LL++VY+++M G ++     
Sbjct: 118 TARIARAKFPGSYVSLDALCKRFDISLDTRDKHGALIDSLLLAEVYLELMGGRTR---AL 174

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
             +        K   P  S   R +PL  R T  E   H   +  +G+NA+W
Sbjct: 175 DLSGQGSGGGGKVVFPARS--PRAEPLTGRQTDSERAAHAAFVDEMGENALW 224


>gi|319787627|ref|YP_004147102.1| DNA polymerase III subunit epsilon [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466139|gb|ADV27871.1| DNA polymerase III, epsilon subunit [Pseudoxanthomonas suwonensis
           11-1]
          Length = 247

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 93/241 (38%), Positives = 143/241 (59%), Gaps = 14/241 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIG VELL+   + R F  +L P+    +  A ++ G+
Sbjct: 1   MRQIILDTETTGLEWKKGNRVVEIGCVELLERRPSGRNFHRYLKPDCDFEA-GAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122
           T EFL DKP+F  I  EF ++ +   AE I HNA FD+GF++ EL R        +D   
Sbjct: 60  TLEFLADKPAFEEIVDEFLEYID--GAELIIHNAAFDLGFLDYELSRCGAHLGRIVDRCS 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLLLARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWDR 239
           FG   + +   +    T  + + +  ++P  +    EEL+ H + ++ L K    A+WD+
Sbjct: 178 FG---DVEAASRGPVVTTVSFAPVSGERPRIS-AQPEELEAHARRLERLRKKAGRALWDQ 233

Query: 240 Y 240
           Y
Sbjct: 234 Y 234


>gi|114332140|ref|YP_748362.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91]
 gi|114309154|gb|ABI60397.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91]
          Length = 234

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/245 (38%), Positives = 147/245 (60%), Gaps = 27/245 (11%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +  D ETTGLD +   RI+EI AVE+ +   T R F  +L P GR++   AL++HG+
Sbjct: 1   MRYVFLDTETTGLDPALGHRIVEIAAVEVCNRRSTGRHFHRYLNP-GRESDEGALRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           + EFL+DKP+F  I SEF +F   ++AE + HNA FDVGFIN EL  I  +P+     +I
Sbjct: 60  SREFLQDKPAFQEICSEFLEFI--EDAEILIHNAPFDVGFINRELGLIRLEPMHNYCLQI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS---- 179
           +DTL +A+  HP  RN+L++LC+RY I  +HR+ HGALLD+ LL++VY+ M  G      
Sbjct: 118 VDTLMLAKELHPGKRNNLDALCERYQIDNAHRTLHGALLDAELLAEVYLAMTRGQESLLM 177

Query: 180 --QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---- 233
             ++    K+ + R      +   N++L+ +       +++ EL+ HD+ ++ +      
Sbjct: 178 EPEVPEAGKSGDSRL-----RATENLTLIVQP------VSQTELELHDRLLERINTESKG 226

Query: 234 NAIWD 238
           N +W+
Sbjct: 227 NCLWN 231


>gi|88608300|ref|YP_506355.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600469|gb|ABD45937.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 228

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 99/241 (41%), Positives = 144/241 (59%), Gaps = 27/241 (11%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           RK++ D ETTGLD KN DR+IEIG VE++D+  T   F ++L P  R+ S EA ++HGIT
Sbjct: 5   RKVILDTETTGLDMKNGDRVIEIGCVEVVDFRITGEIFHIYLNPE-REISKEATRVHGIT 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
            E L D P F  I  +F  F +  ++E +AHNA FD+ F+N+EL R  +  L     +ID
Sbjct: 64  FEQLADSPKFIDIADDFLKFID--SSEIVAHNASFDIRFLNSELIRARQRRLIKLENVID 121

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR+  P S   L++LC+R+ I++  R  HGALLD+ LL+ VYI++   GSQ++  F
Sbjct: 122 TLAMARKIFPGSPASLDALCRRFRISLEQRELHGALLDAQLLARVYIELS-KGSQVSMSF 180

Query: 186 -----KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
                 ++E + FKE +K +               IT EE  EH + I+ L KN +WD  
Sbjct: 181 LEGSSVSSEKKMFKEREKLI---------------ITPEESLEHSELIRRL-KNPLWDEI 224

Query: 241 I 241
           +
Sbjct: 225 L 225


>gi|323495336|ref|ZP_08100414.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
 gi|323310407|gb|EGA63593.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
          Length = 245

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/246 (38%), Positives = 146/246 (59%), Gaps = 23/246 (9%)

Query: 5   NKMRKIVFDIETTGLDS------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           N+ R +V D ETTG++       ++ RIIEIGAVE+++   T R F V++ P+ R+  P+
Sbjct: 8   NQHRIVVLDTETTGMNREGGPHYQDHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPD 66

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP- 117
           A+++HGITDEFL DKP +  + +EF +F   + AE +AHNA FDVGF++ E   +  DP 
Sbjct: 67  AVEVHGITDEFLVDKPDYRDVHAEFLEFI--KGAELVAHNAPFDVGFMDHEFGML--DPS 122

Query: 118 ----LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 123 IGKTVDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLL 182

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           M  G + + F    + +   +  K+       LK       R T +EL+ H   +  + K
Sbjct: 183 MTGGQTSLQFNAGNSSEDGGEAIKRVASGRKSLK-----VLRATADELEAHQSRLDIVEK 237

Query: 234 NA--IW 237
           +   +W
Sbjct: 238 SGSCLW 243


>gi|209695823|ref|YP_002263753.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238]
 gi|208009776|emb|CAQ80082.1| DNA polymerase III, epsilon chain [Aliivibrio salmonicida LFI1238]
          Length = 243

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 95/239 (39%), Positives = 143/239 (59%), Gaps = 16/239 (6%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IV D ETTG++       +  RIIEIGAVE+++   T   F V++ P+ R    EA+ 
Sbjct: 10  RIIVLDTETTGMNLSGGPIYEGHRIIEIGAVEIINRKLTGNHFHVYIKPD-RLIDLEAID 68

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--DPLD 119
           +HGITDEFL  KP +  I  EF  F   + AE +AHNA FDVGF++ E  ++NK     D
Sbjct: 69  VHGITDEFLYGKPEYKDIHDEFLAFI--KGAELVAHNAPFDVGFMDYEFSKLNKLIGTTD 126

Query: 120 P-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              +I DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 127 QYCKITDTLAMAKKISPGKRNNLDVLCGRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 186

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           + ++F    NE       ++++  ++L ++   +  R T +EL+ H+K +  +G   +W
Sbjct: 187 TSLSFSAGGNES---DSSEESINRLNLGRKGLKVL-RATADELEAHEKRLDIVGDACLW 241


>gi|83594940|ref|YP_428692.1| DNA polymerase III, subunit epsilon [Rhodospirillum rubrum ATCC
           11170]
 gi|83577854|gb|ABC24405.1| DNA polymerase III, epsilon subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 230

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/234 (36%), Positives = 141/234 (60%), Gaps = 12/234 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD +  DR++EIG +EL+++  +     +++ P  R   PEA ++HG+
Sbjct: 1   MREIVLDTETTGLDPATGDRLVEIGCIELINHMPSGNDLHLYVNPE-RDMPPEAFRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++ FL DKP F+ +  EF  F  E     I HNA FD+ F+NAEL R+ + PL  SR +D
Sbjct: 60  SEAFLADKPLFAEVVDEFLAFIGEDR--LIIHNAAFDMKFLNAELARLKRPPLPMSRALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +A+ + P ++  L++LC+R+G+  S R+KHGAL+D  LL++VY++ ++GG +     
Sbjct: 118 TLRMAQARFPGAQASLDALCRRFGVDTSSRTKHGALIDCVLLAEVYLE-LIGGREPGLAL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             ++ R    +   V      +  +P     + EEL  H++ ++ + K+ IW R
Sbjct: 177 SADKRR----DGAAVQVARPFRAPRP--HAASPEELAAHEEFLKKV-KDPIWRR 223


>gi|262170796|ref|ZP_06038474.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
 gi|261891872|gb|EEY37858.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
          Length = 247

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 85/190 (44%), Positives = 124/190 (65%), Gaps = 12/190 (6%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R+   EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118
           +HGITDEFL+DKP +  +  EF DF   ++AE +AHNA FDVGF++ E  ++    +   
Sbjct: 70  VHGITDEFLRDKPEYKDVHDEFLDFI--KDAELVAHNAPFDVGFMDYEFAKLGGSVVKTT 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTN 188
           + + F   T 
Sbjct: 188 TSLQFSAATQ 197


>gi|91775831|ref|YP_545587.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
 gi|91709818|gb|ABE49746.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
          Length = 231

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 99/237 (41%), Positives = 138/237 (58%), Gaps = 16/237 (6%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  ++  RIIEI  VEL++   TN  F V+L P+ R+    A ++HGI
Sbjct: 3   MRQIFLDTETTGLYHAQGHRIIEIAGVELVNRRLTNNHFHVYLNPD-REIDEAAQEVHGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T EFL+DKP F+ I  EF  F +   A+ I HNA FD+GF+NAEL R+ +  ++ S   I
Sbjct: 62  TLEFLQDKPRFADIVDEFLQFVS--GADLIIHNAPFDIGFLNAELNRVGRQNIEHSVLEI 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +A+   P  RN+L++LC+ YGI  S R+ HGALLD+ LL+DVY+ M  G   +  
Sbjct: 120 IDTLKMAKEMRPGQRNNLDALCRHYGIDNSSRTLHGALLDAELLADVYMAMTRGQESLMI 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE-ELDEHDKTIQTLGKNA--IW 237
                 D   +   +    I  L R KPL      E EL  H++ +Q + K+   +W
Sbjct: 180 ------DMLDQGPIEGSGEIR-LTRSKPLLVLTASEAELAAHEEYLQAMSKSGACVW 229


>gi|153876055|ref|ZP_02003569.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. PS]
 gi|152067479|gb|EDN66429.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. PS]
          Length = 239

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 98/239 (41%), Positives = 144/239 (60%), Gaps = 15/239 (6%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  K+  RIIEIG +E+L+   TN+ +  FL P+ RK+  EAL +HGI
Sbjct: 1   MRQIALDTETTGLSVKDGHRIIEIGCIEILNRRVTNKYYHQFLQPD-RKSDTEALAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDP-SR 122
           T EFLKDKP F  I ++F +F   + AE + HNA FD+ FIN EL+ +++D  PL+   +
Sbjct: 60  THEFLKDKPRFREIVNDFMNFI--KGAELLIHNAAFDMSFINRELELLHQDWQPLEHYCK 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I D+L +A+ +HP  +N+L++LCKRYG+  S+R  HGALLD+ +L++VY+ M      + 
Sbjct: 118 ITDSLVLAKERHPGQKNNLDALCKRYGVDNSNRQLHGALLDAEILAEVYLTMTAEQVSL- 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237
              + N   F K    T+  IS  +    L T  T+ EL  H + +  +    G   +W
Sbjct: 177 LASEGNNIEFLK--NNTIKRISSKRASLTLITP-TEGELQAHKQRLTAINKACGGKCLW 232


>gi|258627375|ref|ZP_05722159.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603]
 gi|258580413|gb|EEW05378.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603]
          Length = 247

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 85/189 (44%), Positives = 124/189 (65%), Gaps = 12/189 (6%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R+   EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118
           +HGITDEFL+DKP +  +  EF DF   ++AE +AHNA FDVGF++ E  ++    +   
Sbjct: 70  VHGITDEFLRDKPEYKDVHDEFLDFI--KDAELVAHNAPFDVGFMDYEFAKLGGSVVKTT 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKT 187
           + + F   T
Sbjct: 188 TSLQFSAAT 196


>gi|152986464|ref|YP_001348839.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PA7]
 gi|150961622|gb|ABR83647.1| DNA polymerase III, epsilon subunit [Pseudomonas aeruginosa PA7]
          Length = 246

 Score =  165 bits (417), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 137/239 (57%), Gaps = 18/239 (7%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+  +   RIIEIG VEL     T R F V+L P+ R+    A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPS 121
           T+E+LKDKP F  + ++F++F   + A+ I HNA FD+GFIN E     Q+   D  +  
Sbjct: 60  TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR +HP  RN+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M  G + +
Sbjct: 118 TVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-----FTRITKEELDEHDKTIQTLGKNA 235
           +      E      +    P +S ++R  P        R + EEL  H   +  + K+A
Sbjct: 178 SLAGSGAEG-----DGSGRPMVSPIRRLDPARVATPVLRASAEELAAHAARLAVIEKSA 231


>gi|71733799|ref|YP_273952.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|289627521|ref|ZP_06460475.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649928|ref|ZP_06481271.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298486280|ref|ZP_07004343.1| DNA polymerase III epsilon subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554352|gb|AAZ33563.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298159287|gb|EFI00345.1| DNA polymerase III epsilon subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330868357|gb|EGH03066.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330985658|gb|EGH83761.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331012696|gb|EGH92752.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 259

 Score =  165 bits (417), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 100/250 (40%), Positives = 144/250 (57%), Gaps = 19/250 (7%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+  +   RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR--- 122
           +EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   + ++D  D ++   
Sbjct: 68  NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M   G Q +
Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT--GGQTS 183

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTL----GK 233
                N        + +    S ++R     KP    R ++ EL EH+  + T+    G 
Sbjct: 184 LSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGA 243

Query: 234 NAIWDRYISS 243
            A+W + + +
Sbjct: 244 PALWVQMLEA 253


>gi|285017397|ref|YP_003375108.1| DNA polymerase III, epsilon subunit protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472615|emb|CBA15120.1| probable dna polymerase III, epsilon subunit protein [Xanthomonas
           albilineans]
          Length = 244

 Score =  165 bits (417), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 98/241 (40%), Positives = 141/241 (58%), Gaps = 17/241 (7%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   + R F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWKKGNRVVEIGAVELLERRPSGRHFHRYLRPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           T EFL DKP F  +  EF +F +   AE + HNA FD+GF++ EL R+ +     LD + 
Sbjct: 60  TLEFLADKPEFHEVVDEFLEFID--GAELVIHNASFDLGFLDYELSRLGESYGCILDRAS 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR + P  RN L++LCKR G+  +HR  HGALLD+ +L +VYI +  G  +I 
Sbjct: 118 VVDTLLLARERFPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILCEVYIALTSGQEEI- 176

Query: 183 FGFKTNEDRFFKEEKKTVP--NISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIW 237
            GF   E+   K +   V     +LL R + L    T  EL+ H   + TL K    A+W
Sbjct: 177 -GFALVEETTGKTDAHGVAFDMATLLPRPQVL---PTASELEAHQARLDTLRKKAGRALW 232

Query: 238 D 238
           D
Sbjct: 233 D 233


>gi|258621021|ref|ZP_05716055.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573]
 gi|262166312|ref|ZP_06034049.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
 gi|258586409|gb|EEW11124.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573]
 gi|262026028|gb|EEY44696.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
          Length = 247

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 85/190 (44%), Positives = 123/190 (64%), Gaps = 12/190 (6%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R+   EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118
           +HGITDEFL+DKP +  +  EF DF   + AE +AHNA FDVGF++ E  ++    +   
Sbjct: 70  VHGITDEFLRDKPEYKDVHDEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGSVVKTT 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTN 188
           + + F   T 
Sbjct: 188 TSLQFSAATQ 197


>gi|261211353|ref|ZP_05925641.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
 gi|260839308|gb|EEX65934.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
          Length = 247

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 84/185 (45%), Positives = 122/185 (65%), Gaps = 12/185 (6%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R+   EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PL 118
           +HGITDEFL+DKP +  + +EF DF   + AE +AHNA FDVGF++ E  ++        
Sbjct: 70  VHGITDEFLRDKPEYKEVHAEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGSSIGKTT 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINF 183
           + + F
Sbjct: 188 TSLQF 192


>gi|117619304|ref|YP_856106.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560711|gb|ABK37659.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 244

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 88/191 (46%), Positives = 125/191 (65%), Gaps = 11/191 (5%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+I+ D ETTG+++         RIIEIG VE+++   T   F V++ P+ R   PEA++
Sbjct: 8   RQIILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTGNHFHVYIKPD-RLVDPEAIQ 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLD 119
           +HGITDEFL+DKPSFS I  EF +F   + AE IAHNA FDV F++ E  ++  N    D
Sbjct: 67  VHGITDEFLRDKPSFSQIADEFIEFI--RGAELIAHNAPFDVSFMDYEFGKLGLNFKTAD 124

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I DTL++AR   P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G +
Sbjct: 125 ICGITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQT 184

Query: 180 QINFGFKTNED 190
           ++N   +++E+
Sbjct: 185 KLNLATESSEN 195


>gi|119503277|ref|ZP_01625361.1| response regulator receiver domain protein (CheY-like) [marine
           gamma proteobacterium HTCC2080]
 gi|119460923|gb|EAW42014.1| response regulator receiver domain protein (CheY-like) [marine
           gamma proteobacterium HTCC2080]
          Length = 239

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 95/238 (39%), Positives = 139/238 (58%), Gaps = 12/238 (5%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++V D ETTGL+ S+  RIIEIG VEL++   T R F  ++ P  R     AL +HGIT
Sbjct: 3   RQVVLDTETTGLEVSQGHRIIEIGCVELINRRLTGRHFHQYIQPE-RDIDAGALAVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS---RI 123
            EFL DKP+F  I ++F  F +   AE I HNA FDVGFI+AEL R N+D    S    I
Sbjct: 62  PEFLADKPTFDRIANDFVTFID--GAELIIHNAPFDVGFIDAELARFNRDHPSTSALCSI 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL++AR KHP  RN L++LC+RY +  + R+ HGALLD+ +L+DV++ M  G + +  
Sbjct: 120 VDTLTLARSKHPGQRNSLDALCQRYHVDNASRTLHGALLDAEILADVFLIMTGGQTSLGL 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237
             + +E+       + +  +S  ++  P+    T  EL  H+  +  +    G   +W
Sbjct: 180 HDEPSEEGGSGLGARGIRRLSSERKPLPVIN-ATAAELSRHENRLDQIATHSGGAVLW 236


>gi|238897890|ref|YP_002923569.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465647|gb|ACQ67421.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 241

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 99/243 (40%), Positives = 143/243 (58%), Gaps = 21/243 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTGL+      +   IIEIGAVE+++   T +TF  ++ PN R+  PEA ++
Sbjct: 3   RQIVLDTETTGLNKTGPHYEGHNIIEIGAVEVINRRLTGKTFHTYVRPN-RQVDPEAYQI 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL DKP FS IFS+F++F   + +E I HNA FD+GF++ E   + ++      
Sbjct: 62  HGISDEFLSDKPRFSEIFSQFFEFI--RGSELIIHNAAFDIGFMDYEFSALQQNIPKTNT 119

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              + DTL++ARR  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 120 FCTVTDTLALARRLFPGKRNSLDALCDRYQIDNSKRTLHGALLDAQILAEVYLAMTGGQT 179

Query: 180 QINFGFKTNED--RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---N 234
             +F  +T+E   R      K V   S LK         + +ELDEH  ++  L K   +
Sbjct: 180 LFSFSDETDETDIRNMTVRPKRVKTSSQLK-----IIYASCDELDEHQASLDLLEKKEGS 234

Query: 235 AIW 237
            IW
Sbjct: 235 CIW 237


>gi|27365234|ref|NP_760762.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
 gi|37680713|ref|NP_935322.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016]
 gi|320155618|ref|YP_004187997.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
 gi|27361381|gb|AAO10289.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus CMCP6]
 gi|37199462|dbj|BAC95293.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
 gi|319930930|gb|ADV85794.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
          Length = 243

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 94/241 (39%), Positives = 141/241 (58%), Gaps = 21/241 (8%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R+  P+A+ 
Sbjct: 11  RIVVLDTETTGMNREGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPDAID 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118
           +HGITD+FL DKP +  +  EF +F   + AE +AHNA FDVGF++ E  +++       
Sbjct: 70  VHGITDQFLVDKPEYRQVHQEFLEFI--KGAELVAHNAPFDVGFMDYEFGKLDAAIGKTD 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M   G
Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMT--G 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--I 236
            Q +  F  N      E+ + V     LK       R T +EL+ H   +  + K+   +
Sbjct: 186 GQTSLEFNANSQEGGGEDIRRVAGRKSLK-----VLRATADELEAHQSRLDIVEKSGTCL 240

Query: 237 W 237
           W
Sbjct: 241 W 241


>gi|89094533|ref|ZP_01167472.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Oceanospirillum sp. MED92]
 gi|89081269|gb|EAR60502.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Oceanospirillum sp. MED92]
          Length = 236

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 96/239 (40%), Positives = 144/239 (60%), Gaps = 17/239 (7%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S+   IIEIG VE+ +   T +T+  ++ P+ R    EA+++HGI
Sbjct: 1   MRQIVLDTETTGLEPSEGHNIIEIGCVEMFNRRLTGKTYHQYIKPD-RDVDAEAIQVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122
           T+EFL+DKP F  +  EF +F   + AE I HNA FD+GF++ EL R N  P    + S 
Sbjct: 60  TNEFLEDKPKFHEVMEEFVEFV--RGAELIIHNAAFDIGFLDTELDR-NGYPERMENFSL 116

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + D+L +AR+KHP  +N+L++LC RYGI  SHR  HGALLDS +L+DVY+ +  G + ++
Sbjct: 117 VTDSLKLARKKHPGQKNNLDALCNRYGINNSHRELHGALLDSEILADVYLALTGGQTNLS 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237
              + ++        K +        D PL  +I++ +  EHDK ++ L    G   +W
Sbjct: 177 LAGEGDDGEGAGAVIKRLSGAD----DLPL-VQISENDQQEHDKFLKMLDKKSGGECLW 230


>gi|260576103|ref|ZP_05844096.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2]
 gi|259021583|gb|EEW24886.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2]
          Length = 231

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 93/232 (40%), Positives = 138/232 (59%), Gaps = 6/232 (2%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + S+  RI+EIGA+EL ++  T RTF  +L P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGFEPSEGHRIVEIGALELFNHLPTGRTFHKYLNPE-RSMPKEAFDVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+ KP F ++  EF +F    +A  + HNA FD+ F+NAEL   N   L   R +D
Sbjct: 60  GDDFLRGKPLFRAVAREFLEFIG--DATLVIHNASFDMKFLNAELAAANLPLLPFERALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +AR+K P S   L++LC+R+G+  S R KHGALLDS +L++VY++ ++GG Q +   
Sbjct: 118 TVLMARKKFPGSPASLDALCRRFGVDNSGREKHGALLDSEILAEVYLE-LIGGRQPDLVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
             ++     +  +T  +     R  PL   +T+EE   H   +  LG +AIW
Sbjct: 177 AQHQSTKSGDTLETF-DWRPRPRSVPLPPGLTQEEAAAHTAFVARLGDDAIW 227


>gi|260772249|ref|ZP_05881165.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260611388|gb|EEX36591.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 246

 Score =  164 bits (416), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 92/242 (38%), Positives = 140/242 (57%), Gaps = 24/242 (9%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++       +  RIIEIGAVE++D   T R F V+L P+ R+  P+A++
Sbjct: 11  RIVVLDTETTGMNFEGGPHYEGHRIIEIGAVEIIDRKLTGRHFHVYLKPD-REIQPQAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118
           +HGITD FL DKP +  +  EF DF   + AE +AHNA FDVGF++ E  ++N       
Sbjct: 70  VHGITDAFLVDKPQYKEVHQEFLDFI--KGAELVAHNASFDVGFMDYEFAKVNPAIGKTE 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              +I DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 QYCKITDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDR----FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
           + + F   +        F +  +    N+ +L        R + +E++ H + +  + K+
Sbjct: 188 TSLQFSASSQSGEPAGSFVQRVQGERKNLKVL--------RASADEIEAHQQRLDVVEKS 239

Query: 235 AI 236
            I
Sbjct: 240 GI 241


>gi|146310412|ref|YP_001175486.1| DNA polymerase III subunit epsilon [Enterobacter sp. 638]
 gi|145317288|gb|ABP59435.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638]
          Length = 245

 Score =  164 bits (416), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 93/242 (38%), Positives = 146/242 (60%), Gaps = 20/242 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGRNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF ++ N   AE + HNA FD+GF++ E  ++N++      
Sbjct: 69  HGIADEFLLDKPTFADVADEFIEYIN--GAELVIHNASFDIGFMDYEFSKLNRNIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+ +P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ +M GG 
Sbjct: 127 FCKVTDSLALARKMYPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYL-LMTGG- 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDK---TIQTLGKNA 235
           Q +  F T  D    +++       ++++D  L     ++EEL EH+     +Q  G + 
Sbjct: 185 QTSMAFSTESD---SQQQANGGIQRVVRQDSRLRVILASEEELAEHESRLDIVQKKGGSC 241

Query: 236 IW 237
           +W
Sbjct: 242 LW 243


>gi|56550935|ref|YP_161774.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56542509|gb|AAV88663.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 234

 Score =  164 bits (416), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 96/240 (40%), Positives = 141/240 (58%), Gaps = 14/240 (5%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGL   N DR++EIG VEL++  +T  +F  +  P  R     A  +HG+
Sbjct: 1   MREIVFDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNPE-RPMDAVAESIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D FL DKP F+    E   F   + +  +AHNA FD GF+N EL +     +  +R++D
Sbjct: 60  SDAFLADKPLFADKAQELLSFI--KLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR KHP +++ L++LC RYGI  SHR KHGALLD+ LL+ +Y++ + GG QI  G 
Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVE-LTGGRQI--GM 174

Query: 186 KTNEDRFFKEEKKTVPN-ISLLKRDK-----PLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             +++    + + + PN +S L R+K     P     + +EL  H   I  +  N +W R
Sbjct: 175 ALDDNNGPSDGRLSAPNTVSGLPRNKKVKRQPRPHEASPQELLRHGAFIDKI-SNPVWRR 233


>gi|152980051|ref|YP_001352902.1| DNA polymerase III epsilon subunit [Janthinobacterium sp.
           Marseille]
 gi|151280128|gb|ABR88538.1| DNA polymerase III epsilon subunit [Janthinobacterium sp.
           Marseille]
          Length = 235

 Score =  164 bits (416), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 84/180 (46%), Positives = 119/180 (66%), Gaps = 6/180 (3%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ ++ DRIIEIG VEL++   T   F  ++ P  R +   AL +HG+
Sbjct: 1   MRQIVLDTETTGLNPRSGDRIIEIGCVELVNRRLTGNNFHHYINPE-RDSEEGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ I +EF D+ +   A+ I HNA FD+GF++AEL+R+N          +
Sbjct: 60  TTEFLSDKPKFAEIAAEFRDYIS--GADVIIHNAPFDIGFLDAELKRVNTPSFKEHVGEV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A+  HP  RN L++LC RYGI+ +HR+ HGALLD+ LL++VY+ M  G + ++ 
Sbjct: 118 IDTLVQAKEMHPGKRNSLDALCDRYGISNAHRALHGALLDAELLAEVYLAMTRGQNSLSM 177


>gi|330882898|gb|EGH17047.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 259

 Score =  164 bits (416), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 99/250 (39%), Positives = 144/250 (57%), Gaps = 19/250 (7%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+  +   RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR--- 122
           +EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   + ++D  D ++   
Sbjct: 68  NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M   G Q +
Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT--GGQTS 183

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTL----GK 233
                N        + +    S ++R     KP    R ++ EL EH+  + T+    G 
Sbjct: 184 LSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGA 243

Query: 234 NAIWDRYISS 243
            A+W + + +
Sbjct: 244 PALWVQMLEA 253


>gi|330889978|gb|EGH22639.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 259

 Score =  164 bits (416), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 100/250 (40%), Positives = 143/250 (57%), Gaps = 19/250 (7%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+  +   RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPS---R 122
           +EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   + ++D  D +    
Sbjct: 68  NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITLHCS 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M   G Q +
Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT--GGQTS 183

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTL----GK 233
                N        + +    S ++R     KP    R ++ EL EH+  + T+    G 
Sbjct: 184 LSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGA 243

Query: 234 NAIWDRYISS 243
            A+W + + +
Sbjct: 244 PALWVQMLEA 253


>gi|330959421|gb|EGH59681.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 259

 Score =  164 bits (416), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 101/256 (39%), Positives = 149/256 (58%), Gaps = 16/256 (6%)

Query: 1   MIRKNKM-RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M+ KN   R +V D ETTG+  +   RIIEIG VEL+    T R F V+L P+ R++   
Sbjct: 1   MVDKNGTHRAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDP 117
           A+ +HGIT+EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +  +D 
Sbjct: 60  AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDK 117

Query: 118 LDPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D +R   I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L++VY+ M
Sbjct: 118 ADITRHCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILAEVYLAM 177

Query: 175 MVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRDK-PL-FTRITKEELDEHDKTIQTL 231
             G + ++  G  ++ +   +        I  L  D+ P    R ++ EL EH+  + T+
Sbjct: 178 TGGQTSLSLAGNASDGNGSGEGGSSRGSEIRRLPADRLPCRVIRASESELAEHEVRMNTI 237

Query: 232 ----GKNAIWDRYISS 243
               G  A+W + + +
Sbjct: 238 AKASGAPALWVQMLEA 253


>gi|149185255|ref|ZP_01863572.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21]
 gi|148831366|gb|EDL49800.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21]
          Length = 229

 Score =  164 bits (416), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 83/178 (46%), Positives = 114/178 (64%), Gaps = 5/178 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD +  DR++EIG VE++    T  TF  +  P  R     A  +HG+
Sbjct: 1   MREIVFDTETTGLDPRTGDRMVEIGCVEMVSLVPTGNTFHAYYNPE-RDMPAGAEAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  FL DKP F     E  DF    +A  IAHNA FD GF+NAEL    ++ +  SR+ID
Sbjct: 60  SAAFLSDKPLFRDTAHELLDFIG--DAPLIAHNAGFDFGFLNAELALCEREAVCMSRMID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           T+++A+++HP ++  L++LC RYGI  SHR KHGALLD+ LL+ VY+++  GG QI  
Sbjct: 118 TVALAKKRHPGAKLSLDALCTRYGIDRSHRVKHGALLDAELLAQVYVELK-GGRQIGL 174


>gi|320325171|gb|EFW81239.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 259

 Score =  164 bits (416), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 99/250 (39%), Positives = 144/250 (57%), Gaps = 19/250 (7%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+  +   RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR--- 122
           +EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   + ++D  D ++   
Sbjct: 68  NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M   G Q +
Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT--GGQTS 183

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTL----GK 233
                N        + +    S ++R     KP    R ++ EL EH+  + T+    G 
Sbjct: 184 LSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGA 243

Query: 234 NAIWDRYISS 243
            A+W + + +
Sbjct: 244 PALWVQMLEA 253


>gi|49082166|gb|AAT50483.1| PA1816 [synthetic construct]
          Length = 247

 Score =  164 bits (416), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 136/239 (56%), Gaps = 18/239 (7%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+  +   RIIEIG VEL     T R F V+L P+ R+    A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPS 121
           T+E+LKDKP F  + ++F++F   + A+ I HNA FD+GFIN E     Q+   D  +  
Sbjct: 60  TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR +HP  RN+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M  G + +
Sbjct: 118 SVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-----FTRITKEELDEHDKTIQTLGKNA 235
           +      E      +    P +S ++R  P        R   EEL  H   +  + K+A
Sbjct: 178 SLAGSGAEG-----DGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSA 231


>gi|15597013|ref|NP_250507.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO1]
 gi|107101248|ref|ZP_01365166.1| hypothetical protein PaerPA_01002281 [Pseudomonas aeruginosa PACS2]
 gi|218892230|ref|YP_002441097.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa LESB58]
 gi|254234910|ref|ZP_04928233.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719]
 gi|296389793|ref|ZP_06879268.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAb1]
 gi|313110514|ref|ZP_07796399.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016]
 gi|9947801|gb|AAG05205.1|AE004608_4 DNA polymerase III, epsilon chain [Pseudomonas aeruginosa PAO1]
 gi|7229492|gb|AAF42851.1| mismatch repair protein MutD [Pseudomonas aeruginosa PAO1]
 gi|126166841|gb|EAZ52352.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719]
 gi|218772456|emb|CAW28238.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa LESB58]
 gi|310882901|gb|EFQ41495.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016]
          Length = 246

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 136/239 (56%), Gaps = 18/239 (7%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+  +   RIIEIG VEL     T R F V+L P+ R+    A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPS 121
           T+E+LKDKP F  + ++F++F   + A+ I HNA FD+GFIN E     Q+   D  +  
Sbjct: 60  TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR +HP  RN+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M  G + +
Sbjct: 118 SVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-----FTRITKEELDEHDKTIQTLGKNA 235
           +      E      +    P +S ++R  P        R   EEL  H   +  + K+A
Sbjct: 178 SLAGSGAEG-----DGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSA 231


>gi|126734401|ref|ZP_01750148.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2]
 gi|126717267|gb|EBA14131.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2]
          Length = 241

 Score =  164 bits (415), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 96/247 (38%), Positives = 140/247 (56%), Gaps = 24/247 (9%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  + DRI+EIGAVEL+ +  T RT+  ++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFEPHEGDRIVEIGAVELMGHVPTGRTYHQYINPQ-RSMPAEAFGVHGI 59

Query: 66  T-------------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
                          E L+DKP F  +  +F DF    +A+ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQDPKPGQETLRDKPLFKDVAQDFVDFVG--DAKLVIHNAAFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +N+  L   + +DTL+IARRK P S   L++LC+R+ I  S R+ HGALLDS +L++VY+
Sbjct: 118 LNRPLLPMDQALDTLAIARRKFPGSPASLDALCRRFAIDNSSRTLHGALLDSEILAEVYL 177

Query: 173 KMMVGGSQINFGFK--TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           + ++GG Q +F     T       +  +  P+     R +PL  ++T EE   H   ++ 
Sbjct: 178 E-LIGGRQPDFALAADTRSQSAGGQSDEWRPS----ARPEPLAPKLTIEEAAAHAAFVEQ 232

Query: 231 LGKNAIW 237
           LG  AIW
Sbjct: 233 LGDGAIW 239


>gi|254240209|ref|ZP_04933531.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192]
 gi|126193587|gb|EAZ57650.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192]
          Length = 246

 Score =  164 bits (415), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 136/239 (56%), Gaps = 18/239 (7%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+  +   RIIEIG VEL     T R F V+L P+ R+    A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRHLTGRHFHVYLQPD-REVDEGAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPS 121
           T+E+LKDKP F  + ++F++F   + A+ I HNA FD+GFIN E     Q+   D  +  
Sbjct: 60  TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR +HP  RN+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M  G + +
Sbjct: 118 SVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-----FTRITKEELDEHDKTIQTLGKNA 235
           +      E      +    P +S ++R  P        R   EEL  H   +  + K+A
Sbjct: 178 SLAGSGAEG-----DGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSA 231


>gi|56698700|ref|YP_169077.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3]
 gi|56680437|gb|AAV97103.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3]
          Length = 241

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/249 (38%), Positives = 141/249 (56%), Gaps = 25/249 (10%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL ++  T  T+  ++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPETGDRIVEIGAVELWNHIATGNTYHQYINPE-RMMPAEAFGVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             +DKP F+ +   F DF    ++  + HNA FD+ F+NAEL+ 
Sbjct: 60  GPDILEPPQQPEPGQVTLRDKPVFAKVGQAFRDFV--ADSHLVIHNASFDMKFLNAELRW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    +   R IDTL +ARRK P S   L++LC+R+GI  S+R  HGALLD+ +L++VY+
Sbjct: 118 MGLPEIPFDRAIDTLGMARRKFPGSPATLDALCRRFGIDNSNRVLHGALLDAEILAEVYL 177

Query: 173 KMMVGGSQINFGFK--TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           + ++GG Q +FG    T  D   +E          + R  PL  RIT+ E   H + ++ 
Sbjct: 178 E-LIGGKQPDFGLSTVTTGDGPGQETAWRA-----MPRPTPLPARITEAERTAHAEFVEK 231

Query: 231 LGKNAIWDR 239
           LG+NA+W R
Sbjct: 232 LGENAVWKR 240


>gi|257095469|ref|YP_003169110.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047993|gb|ACV37181.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 238

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/229 (41%), Positives = 131/229 (57%), Gaps = 11/229 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL+ K   RIIEI  VE+ +   TNR F  +L P+ R     AL +HGI
Sbjct: 1   MRQIFLDTETTGLEHKFGHRIIEIACVEMRNRRLTNRHFHRYLNPD-RDIDAGALSVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           + EFL DKP F+ +  EF DF   + AE + HNA FDVGF+NAEL  ++  P+D     +
Sbjct: 60  SREFLLDKPRFADVAVEFLDFV--RGAELVIHNAAFDVGFLNAELALLDMAPVDTVCHGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL +A+  HP  +N+LN+LC+RYG+  SHR+ HGALLD+ +L++VY+ M  G   +  
Sbjct: 118 CDTLRMAKDLHPGKKNNLNALCERYGVDNSHRTLHGALLDAEILAEVYLAMTRGQESLIM 177

Query: 184 GFK-TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
                N  R     +   P     +R      R + EEL EH + +  +
Sbjct: 178 DLGDDNGGRLDTAGRTPSPG----RRQTLQVKRASPEELAEHQQVLTAI 222


>gi|289207686|ref|YP_003459752.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sp. K90mix]
 gi|288943317|gb|ADC71016.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. K90mix]
          Length = 238

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/185 (46%), Positives = 121/185 (65%), Gaps = 11/185 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S+  R+IEIG +EL +   T R    +L P+ R+    A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPSEGHRVIEIGCLELDNRRPTGRKLHEYLQPD-REIDAGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-----DPLDP 120
           T+EFL DKP F+ +  EF +F   + AE I HNA FDVGFIN EL+ + +     + ++ 
Sbjct: 60  TNEFLADKPRFADVVGEFIEFV--RGAELIIHNAPFDVGFINHELRLLGEAAPVTELVEV 117

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             ++D+L +ARR HP +RN L++LCKRY I  S R+ HGALLD+ LL+DVY+ M   G Q
Sbjct: 118 CTVLDSLVMARRMHPGTRNSLDALCKRYEIDASGRTLHGALLDAELLADVYLAMT--GGQ 175

Query: 181 INFGF 185
           +  G 
Sbjct: 176 VALGL 180


>gi|116049766|ref|YP_791427.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584987|gb|ABJ11002.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 246

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 136/239 (56%), Gaps = 18/239 (7%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+  +   RIIEIG VEL     T R F V+L P+ R+    A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPS 121
           T+E+LKDKP F  + ++F++F   + A+ I HNA FD+GFIN E     Q+   D  +  
Sbjct: 60  TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVSEYC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR +HP  RN+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M  G + +
Sbjct: 118 SVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-----FTRITKEELDEHDKTIQTLGKNA 235
           +      E      +    P +S ++R  P        R   EEL  H   +  + K+A
Sbjct: 178 SLAGSGAEG-----DGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSA 231


>gi|88857806|ref|ZP_01132448.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudoalteromonas tunicata D2]
 gi|88819423|gb|EAR29236.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudoalteromonas tunicata D2]
          Length = 252

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 117/184 (63%), Gaps = 7/184 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG+D K   RIIEIG VEL++   T   F V++ P  R    EA+ +HGIT
Sbjct: 19  RQIVLDTETTGIDPKLGHRIIEIGCVELINRRFTGNNFHVYINPE-RDIEDEAIDVHGIT 77

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSRI 123
           ++FL+DKP F  I  EF+D+   Q AE + HNA FDVGF+++E QR+           ++
Sbjct: 78  NQFLRDKPKFHHIAQEFFDYI--QGAELVIHNAAFDVGFMDSEFQRLRTGYPKTAQFCQV 135

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR  HP  +N+L++LC+RY I    R+ HGALLDS +LSDVY+ M  G   +N 
Sbjct: 136 LDTLKMARELHPGQKNNLDALCRRYNIDNGKRTMHGALLDSEILSDVYLAMTGGQVSLNL 195

Query: 184 GFKT 187
             +T
Sbjct: 196 NTQT 199


>gi|153829952|ref|ZP_01982619.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39]
 gi|148874587|gb|EDL72722.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39]
          Length = 247

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/190 (45%), Positives = 122/190 (64%), Gaps = 12/190 (6%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R    EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118
           +HGITDEFLKDKP +  +  EF DF   + AE +AHNA FDVGF++ E  +++       
Sbjct: 70  VHGITDEFLKDKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLSGAIGKTS 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTN 188
           + + F   T 
Sbjct: 188 TSLQFSSATQ 197


>gi|239993463|ref|ZP_04713987.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC
           27126]
          Length = 239

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/178 (47%), Positives = 121/178 (67%), Gaps = 9/178 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D K   RIIEIG VE+++   T   F V++ P GR    EA+++HGI
Sbjct: 1   MRQIVLDTETTGIDPKEGHRIIEIGCVEVVNRRLTGNHFHVYINP-GRHIEQEAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE--LQRINKDPL--DPS 121
           T+EFL DKP+FS +  EF  F   + A+ + HNA FDVGF++ E  ++   K  +     
Sbjct: 60  TNEFLADKPTFSQVAQEFVSFI--KGAQLVIHNAPFDVGFMDHEFGMEASTKGVITNQIC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            ++DTL++AR+ HP  +N+L++LCKRYGI  SHR+ HGALLD+ +L+DVY+ +M GG 
Sbjct: 118 DVLDTLTLARQMHPGQKNNLDALCKRYGIDNSHRTLHGALLDAEILADVYL-LMTGGQ 174


>gi|323498002|ref|ZP_08103011.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
 gi|323317047|gb|EGA70049.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
          Length = 247

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/242 (38%), Positives = 141/242 (58%), Gaps = 19/242 (7%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IV D ETTG++ +        RIIEIGAVE+++   T R F V++ P+ R+  PEA+ 
Sbjct: 11  RIIVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RQIQPEAVL 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PL 118
           +HGITDEFL DKP +  +  EF +F   + AE +AHNA FD GF++ E + +N       
Sbjct: 70  VHGITDEFLVDKPEYQDVHQEFLEFI--KGAELVAHNAPFDTGFMDYEFEMLNAQIGKTE 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFG-FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA-- 235
           + + F    ++ D    E  K V +     R      R + +EL+ H   +  + K+   
Sbjct: 188 TSLQFNPGASDSDAVGGESIKRVAS----GRKALKVIRASADELEAHQSRLDIVEKSGSC 243

Query: 236 IW 237
           +W
Sbjct: 244 LW 245


>gi|153825368|ref|ZP_01978035.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2]
 gi|183179467|ref|ZP_02957678.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3]
 gi|229524236|ref|ZP_04413641.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|229528763|ref|ZP_04418153.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|254225776|ref|ZP_04919381.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51]
 gi|254286458|ref|ZP_04961415.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226]
 gi|262192140|ref|ZP_06050301.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|297580875|ref|ZP_06942800.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|125621682|gb|EAZ50011.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51]
 gi|149741052|gb|EDM55121.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2]
 gi|150423407|gb|EDN15351.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226]
 gi|183012878|gb|EDT88178.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3]
 gi|229332537|gb|EEN98023.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229337817|gb|EEO02834.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|262031989|gb|EEY50566.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|297534701|gb|EFH73537.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|327484751|gb|AEA79158.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4]
          Length = 247

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/190 (45%), Positives = 121/190 (63%), Gaps = 12/190 (6%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R    EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118
           +HGITDEFLKDKP +  +  EF DF   + AE +AHNA FDVGF++ E  ++        
Sbjct: 70  VHGITDEFLKDKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKTS 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTN 188
           + + F   T 
Sbjct: 188 TSLQFSSATQ 197


>gi|302187967|ref|ZP_07264640.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           syringae 642]
 gi|330952814|gb|EGH53074.1| DNA polymerase III subunit epsilon [Pseudomonas syringae Cit 7]
 gi|330972572|gb|EGH72638.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 259

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/236 (41%), Positives = 138/236 (58%), Gaps = 15/236 (6%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+  +   RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR--- 122
           +EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   + ++D  D ++   
Sbjct: 68  NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M   G Q +
Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT--GGQTS 183

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTLGK 233
                N        + +    S ++R     KP    R ++ EL EH+  + T+ K
Sbjct: 184 LSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAK 239


>gi|289679441|ref|ZP_06500331.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           syringae FF5]
 gi|330975085|gb|EGH75151.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 259

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 15/236 (6%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+  +   RI+EIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR--- 122
           +EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   + ++D  D ++   
Sbjct: 68  NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M   G Q +
Sbjct: 126 VLDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT--GGQTS 183

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTLGK 233
                N        + +    S ++R     KP    R ++ EL EH+  + T+ K
Sbjct: 184 LSLAGNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAEHEVRMSTIAK 239


>gi|84389766|ref|ZP_00991318.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
 gi|84376867|gb|EAP93741.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
          Length = 255

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/244 (38%), Positives = 142/244 (58%), Gaps = 26/244 (10%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IV D ETTG++++        RI+EIGAVE+++   T R F V++ P+ R    EA+ 
Sbjct: 22  RIIVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRRLTGRHFHVYIKPD-RAIQEEAIG 80

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118
           +HGITDEFL DKP +  I  EF DF   + AE +AHNA FD GF++ E +++N       
Sbjct: 81  VHGITDEFLIDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLNSAIGKTD 138

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ +M GG
Sbjct: 139 DYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYL-LMTGG 197

Query: 179 S---QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
               Q N G K  E    +  +    ++ +L        R T +E++ H   +  + K+ 
Sbjct: 198 QTSLQFNAGQKEGEGESIRRAESGRKSLKVL--------RATADEVEAHQSRLDLVEKSG 249

Query: 236 --IW 237
             +W
Sbjct: 250 SCLW 253


>gi|307545281|ref|YP_003897760.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
 gi|307217305|emb|CBV42575.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581]
          Length = 255

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 120/193 (62%), Gaps = 12/193 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTG+D +   R+IEIGAVE+++   T  T+  ++ P  R    EA+++HGI
Sbjct: 1   MRQIILDTETTGIDPREGHRLIEIGAVEMVNRRLTGNTYHQYINPE-RDIEAEAVEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----- 120
           T+E + D+P F+ +   FW F   + AE + HNA FDVGFI+ E  R+N+    P     
Sbjct: 60  TNEKVADEPVFAEVADAFWAFI--KGAELVIHNAPFDVGFIDHEFARLNEARGGPVLGPV 117

Query: 121 ---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
               RI+DTL +AR KHP  RN+L++LCKRY I   HR  HGALLD+ +L+DVY+ M  G
Sbjct: 118 AEHCRILDTLQLARDKHPGQRNNLDALCKRYEIQNGHRVLHGALLDAEILADVYLAMTGG 177

Query: 178 GSQINFGFKTNED 190
            + ++      +D
Sbjct: 178 QTALSLDASAGDD 190


>gi|66045009|ref|YP_234850.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255716|gb|AAY36812.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Pseudomonas syringae pv. syringae B728a]
          Length = 259

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/236 (41%), Positives = 138/236 (58%), Gaps = 15/236 (6%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+  +   RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR--- 122
           +EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   + ++D  D ++   
Sbjct: 68  NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M   G Q +
Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT--GGQTS 183

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTLGK 233
                N        + +    S ++R     KP    R ++ EL EH+  + T+ K
Sbjct: 184 LSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAK 239


>gi|46201693|ref|ZP_00054536.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 230

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/236 (40%), Positives = 140/236 (59%), Gaps = 10/236 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D     R++EIG VEL ++  T   F  +  P  R    EA K+HG+
Sbjct: 1   MREIVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGEVFHRYCNPE-RDMPEEAFKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ I ++F +F    +A  + HNA+FD+ FINAEL R+    L  SR ID
Sbjct: 60  SVEFLSDKPLFAEIVADFLEFIG--DAPLVIHNAEFDMRFINAELARLGFPALPMSRSID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +AR+K P ++ +L++LC+R+ I  +HR+KHGALLDS LL++VY++ ++GG Q   G 
Sbjct: 118 TVMMARKKFPGAQANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQ-LIGGRQP--GL 174

Query: 186 KTNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
           +    +          +   +KRD  +P     T+EE   H   +  L KNA+W R
Sbjct: 175 ELGGGKGNGAGSAASASTQEVKRDFREPRPHGPTEEETAAHTAFVAKL-KNAVWLR 229


>gi|28199104|ref|NP_779418.1| DNA polymerase III subunit epsilon [Xylella fastidiosa Temecula1]
 gi|71901532|ref|ZP_00683617.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|182681831|ref|YP_001829991.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M23]
 gi|28057202|gb|AAO29067.1| DNA polymerase III epsilon chain [Xylella fastidiosa Temecula1]
 gi|71728719|gb|EAO30865.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|182631941|gb|ACB92717.1| DNA polymerase III, epsilon subunit [Xylella fastidiosa M23]
 gi|307578082|gb|ADN62051.1| DNA polymerase III subunit epsilon [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 239

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/246 (40%), Positives = 140/246 (56%), Gaps = 21/246 (8%)

Query: 4   KNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +NK R+IV D ETTGL+ SK +RI+EIGAVELLD   +   F  +L P+    S  A ++
Sbjct: 2   RNKKRQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPDVSFESG-AQEV 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119
            G+T EFL DKP FS I  +F  + N   AE I HNA FD+GF++ EL R+        D
Sbjct: 61  TGLTMEFLADKPEFSMIADKFLAYIN--GAELIIHNAAFDLGFLDYELSRLGSQYGKITD 118

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            + ++DTL +AR ++P  RN L++LCKR G+  +HR  HGALLD+ +L+DVYI +  G  
Sbjct: 119 RASVLDTLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQE 178

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR----ITKEELDEHDKTIQTLGKNA 235
           +I F          +  +  V   S+      L TR     ++ EL+ H+  +  L K A
Sbjct: 179 EIGFALP-------ESSRGGVDAASVAFMPDVLLTRPCVVASQSELEAHEARLAKLRKIA 231

Query: 236 ---IWD 238
              +WD
Sbjct: 232 GHVLWD 237


>gi|190571471|ref|YP_001975829.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213018874|ref|ZP_03334682.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190357743|emb|CAQ55194.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212995825|gb|EEB56465.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 234

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/241 (39%), Positives = 144/241 (59%), Gaps = 11/241 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           K+++R+IV D ETTGLD+K+  RIIEIG VEL++   T +TF  +L P  R     + K+
Sbjct: 2   KSRLREIVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPE-RDIPYHSFKI 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI++EFL+DKP FS +  EF DF +  N   + HNA+FDV F+N EL ++N   +   R
Sbjct: 61  HGISEEFLEDKPLFSDVALEFLDFIS--NDILVIHNAEFDVKFLNMELGKLNAGLISSDR 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+K   S   LN+LCKR+ I++  R  HGAL+D+ LL+ VY+++  G     
Sbjct: 119 VLDTLPLARKKFVGSPASLNALCKRFDISLEGRELHGALVDAQLLAKVYVELTGGLQTFL 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           F  +  +D      +  V N++  +    +      +E+DEH K +  +  N +W  YI 
Sbjct: 179 FNNECAQDNNSTFIQHKVRNLARREHSPSI------KEIDEHKKLLDKIN-NPLWKEYIE 231

Query: 243 S 243
           S
Sbjct: 232 S 232


>gi|330939732|gb|EGH43019.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 259

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/236 (40%), Positives = 138/236 (58%), Gaps = 15/236 (6%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+  +   RI+EIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RAVVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR--- 122
           +EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   + ++D  D ++   
Sbjct: 68  NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M   G Q +
Sbjct: 126 VLDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT--GGQTS 183

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTLGK 233
                N        + +    S ++R     KP    R ++ EL EH+  + T+ K
Sbjct: 184 LSLAGNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAEHEVRMSTIAK 239


>gi|229513876|ref|ZP_04403338.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|229349057|gb|EEO14014.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
          Length = 247

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/185 (45%), Positives = 120/185 (64%), Gaps = 12/185 (6%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R    EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118
           +HGITDEFLKDKP +  +  EF DF   + AE +AHNA FDVGF++ E  ++        
Sbjct: 70  VHGITDEFLKDKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKTS 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINF 183
           + + F
Sbjct: 188 TSLQF 192


>gi|229522180|ref|ZP_04411597.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229341105|gb|EEO06110.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
          Length = 247

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/185 (45%), Positives = 120/185 (64%), Gaps = 12/185 (6%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R    EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118
           +HGITDEFLKDKP +  +  EF DF   + AE +AHNA FDVGF++ E  ++        
Sbjct: 70  VHGITDEFLKDKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKTS 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINF 183
           + + F
Sbjct: 188 TSLQF 192


>gi|238026771|ref|YP_002911002.1| DNA polymerase III subunit epsilon [Burkholderia glumae BGR1]
 gi|237875965|gb|ACR28298.1| DNA polymerase III, epsilon subunit [Burkholderia glumae BGR1]
          Length = 240

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/238 (39%), Positives = 135/238 (56%), Gaps = 13/238 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VE+L+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRIIEIGCVEMLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ I     DF   +  E I HNA FD+GFI+AEL+R+   PL    + +
Sbjct: 60  TTEFLSDKPKFAEIAQALCDFV--RGGELIIHNAPFDIGFIDAELERLGMPPLLEHCNGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A+   P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
                 D   +  +     +S    D P+    +++EL  H   +  L K+     +W
Sbjct: 176 VIDMLGDTGDRGGETGGSRVSFASLDLPVIAA-SEQELAAHQAQLDDLDKSVKGACVW 232


>gi|226328903|ref|ZP_03804421.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198]
 gi|225202089|gb|EEG84443.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198]
          Length = 250

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/246 (39%), Positives = 146/246 (59%), Gaps = 27/246 (10%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P  R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPE-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS- 121
           HGI+DEFL+D PSF+ I  EF ++   + AE I HNA FD+GF++ E +++N+D + P+ 
Sbjct: 66  HGISDEFLEDCPSFADIADEFLEYI--RGAELIIHNASFDIGFMDYEFRKLNRD-IPPTE 122

Query: 122 ---RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              +I D+L++AR   P  RN+L++LC RY I  S R+ HGALLD+ +LSDVY+ M   G
Sbjct: 123 TFCQITDSLAMARALFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMT--G 180

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL----FTRITKEELDEHDKTIQTL--- 231
            Q    F    +   ++E+  +  I     ++P+      R T EEL EH+  +  +   
Sbjct: 181 GQTALAFSMEGESNNEQEQNDIQRI-----ERPVSGLRVIRATAEELAEHESRLDLVEKK 235

Query: 232 GKNAIW 237
           G + +W
Sbjct: 236 GGHCLW 241


>gi|311103923|ref|YP_003976776.1| DNA polymerase III subunit epsilon [Achromobacter xylosoxidans A8]
 gi|310758612|gb|ADP14061.1| DNA polymerase III, epsilon subunit [Achromobacter xylosoxidans A8]
          Length = 240

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 114/174 (65%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTGLD ++  RI+EIG VE+++   T     ++L P+ R + PEAL +HG+
Sbjct: 1   MRQIIFDTETTGLDPAQGHRIVEIGCVEMVNRMSTGNNLHIYLNPD-RDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL DKP F+ +  EF  F   Q AE IAHNA FDV F NAEL +  + P+      +
Sbjct: 60  TTEFLSDKPRFADVADEFVKFI--QGAELIAHNAAFDVKFFNAELAKTGRGPVTDYCETV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D+L  AR   P  RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M  G
Sbjct: 118 TDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRG 171


>gi|15642231|ref|NP_231864.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586228|ref|ZP_01676018.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80]
 gi|121726541|ref|ZP_01679790.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52]
 gi|147674786|ref|YP_001217749.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395]
 gi|153213799|ref|ZP_01949007.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587]
 gi|153817083|ref|ZP_01969750.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457]
 gi|153820811|ref|ZP_01973478.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33]
 gi|227082357|ref|YP_002810908.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2]
 gi|229507692|ref|ZP_04397197.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229512113|ref|ZP_04401592.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229519248|ref|ZP_04408691.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229607196|ref|YP_002877844.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236]
 gi|254849364|ref|ZP_05238714.1| DNA polymerase III [Vibrio cholerae MO10]
 gi|255747069|ref|ZP_05421014.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262161386|ref|ZP_06030496.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262167744|ref|ZP_06035446.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|298500392|ref|ZP_07010197.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757]
 gi|9656792|gb|AAF95377.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121549494|gb|EAX59520.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80]
 gi|121630994|gb|EAX63373.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52]
 gi|124115723|gb|EAY34543.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587]
 gi|126512351|gb|EAZ74945.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457]
 gi|126521603|gb|EAZ78826.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33]
 gi|146316669|gb|ABQ21208.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|227010245|gb|ACP06457.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2]
 gi|227014129|gb|ACP10339.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229343937|gb|EEO08912.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229352078|gb|EEO17019.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229355197|gb|EEO20118.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229369851|gb|ACQ60274.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236]
 gi|254845069|gb|EET23483.1| DNA polymerase III [Vibrio cholerae MO10]
 gi|255735471|gb|EET90871.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262023809|gb|EEY42508.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262028697|gb|EEY47351.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|297541085|gb|EFH77139.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757]
          Length = 247

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/185 (45%), Positives = 120/185 (64%), Gaps = 12/185 (6%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R    EA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118
           +HGITDEFLKDKP +  +  EF DF   + AE +AHNA FDVGF++ E  ++        
Sbjct: 70  VHGITDEFLKDKPEYKDVHEEFVDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKTS 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINF 183
           + + F
Sbjct: 188 TSLQF 192


>gi|225677154|ref|ZP_03788153.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590821|gb|EEH12049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 231

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 142/239 (59%), Gaps = 11/239 (4%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           ++K+R+IV D ETTGLD+    RIIEIG VEL++   T + F  +L P  R     + K+
Sbjct: 2   ESKLREIVLDTETTGLDTGSGHRIIEIGCVELINRIPTGKVFHRYLNPE-RDIPYHSFKI 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI++EFL+DKP FS +  EF DF +  N   + HNA+FDV F+N EL ++N   +   R
Sbjct: 61  HGISEEFLEDKPLFSDVALEFLDFIS--NDILVIHNAEFDVKFLNMELSKLNAGLISSDR 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+K   S   LN+LCKR+ I++ +R  HGAL+D+ LL+ VY+++  G     
Sbjct: 119 VLDTLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTFL 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
           F  + N+D      +  V N++      P       EE+DEH K +  +  N +W++ I
Sbjct: 179 FDNECNQDSNSTFVQHKVRNLT------PREHSPNSEEIDEHKKLLDKIN-NTLWNKCI 230


>gi|237748501|ref|ZP_04578981.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes OXCC13]
 gi|229379863|gb|EEO29954.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes OXCC13]
          Length = 247

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/239 (39%), Positives = 136/239 (56%), Gaps = 17/239 (7%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL + N DRIIEIG VE+L    T   F  ++ P  R + P+AL +HG+
Sbjct: 1   MRQIVLDTETTGLYANNGDRIIEIGCVEVLSRHVTENHFHQYINPE-RDSHPDALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL DKP F+ I   F D+   + AE I HNA FD+GF+NAEL R+    ++     I
Sbjct: 60  TTEFLSDKPKFAEIAQAFCDYI--RGAELIIHNAPFDIGFLNAELARLGMPKVEEIAECI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L  AR   P  RN L++LC+R+ I+ +HR+ HGALLDS LL++VY+ M  G   +  
Sbjct: 118 TDSLVKARDMFPGRRNSLDALCERFEISNAHRTLHGALLDSELLAEVYLAMTRGQETLEI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-----GKNAIW 237
           G  + E+     +   + NI +      +    T+EEL  H++ +  +     G   +W
Sbjct: 178 GGMSIEEEEAAAKAAPLSNIHI------VVLAATEEELARHEEVLDDIEKSNKGAPCVW 230


>gi|114321140|ref|YP_742823.1| DNA polymerase III, epsilon subunit [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227534|gb|ABI57333.1| DNA polymerase III, epsilon subunit [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 243

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/243 (38%), Positives = 138/243 (56%), Gaps = 17/243 (6%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S+ DR+IEIG VEL+D   T   F  +L P+ R+   EA+++HGI
Sbjct: 1   MRQIVLDTETTGLEWSQGDRVIEIGCVELVDRRPTGNNFHQYLNPD-REVPQEAVEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           T++FL DKP F  +   F ++   + +E + HNA FDVGF++ EL R+ +      D + 
Sbjct: 60  TNDFLADKPRFHEVAERFVEYI--RGSELVIHNAAFDVGFLDYELSRLGRGWGRVEDFAS 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR++HP  RN L++LCKRY +  + R  HGALLD+ +L+DVY+  M GG +  
Sbjct: 118 VLDTLLLARQRHPGQRNSLDALCKRYDVDNTQRELHGALLDARILADVYLA-MTGGQKAL 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH------DKTIQTLGKNAI 236
           F     E +  + E      I  L  D+P    +   E +        D+  +  G    
Sbjct: 177 FTLDEEEAQAHEGEGG---GIRRLPSDRPRLAVVRAGEAERRAHEALLDRIDKASGGGCR 233

Query: 237 WDR 239
           W R
Sbjct: 234 WRR 236


>gi|88813349|ref|ZP_01128587.1| DNA polymerase III, epsilon subunit [Nitrococcus mobilis Nb-231]
 gi|88789407|gb|EAR20536.1| DNA polymerase III, epsilon subunit [Nitrococcus mobilis Nb-231]
          Length = 245

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/241 (38%), Positives = 135/241 (56%), Gaps = 17/241 (7%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +   R+IEIG  EL     + RTF  +L P+ R+  P A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPADGHRVIEIGCYELCYRRASGRTFHHYLNPD-REVEPGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           T+EFL DKP F  I ++F +F   ++AE I HNA FDVGF++ E  R+        D  +
Sbjct: 60  TNEFLADKPRFCDIATDFIEFI--RDAELIIHNAPFDVGFLDYEFSRLTGSWGRLADYCQ 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR +HP  RN L++LC RY +  + RS HGALLD+ LL++VY+ M   G Q  
Sbjct: 118 VTDTLALARERHPGQRNSLDALCTRYAVDNAQRSLHGALLDAQLLAEVYLLMT--GGQTA 175

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEH----DKTIQTLGKNAI 236
              ++        +   V  +  L   +P     R +  E  EH    D+  Q +G   +
Sbjct: 176 LSLESGAG--LSADLALVGGVRRLDPARPRLPVVRASSAEQAEHRHWLDELDQAVGGCCV 233

Query: 237 W 237
           W
Sbjct: 234 W 234


>gi|253999157|ref|YP_003051220.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4]
 gi|253985836|gb|ACT50693.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4]
          Length = 234

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/174 (49%), Positives = 119/174 (68%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  ++  RIIEI AVE+++   T++ + V+L P+ R+    A ++HGI
Sbjct: 1   MRQIFLDTETTGLYPAQGHRIIEIAAVEVINRRITSQHYHVYLNPD-REIDAGAQEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL+DKP F+ +  EF DF   Q++E I HNA FDVGF+NAEL RI K  ++   S I
Sbjct: 60  TLEFLQDKPRFADVVGEFLDFV--QDSELIIHNAPFDVGFLNAELGRIEKPGIESVASGI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL +A+   P  RN+L++LC+ +GI  S R+ HGALLD+ LL+DVY+ M  G
Sbjct: 118 IDTLKMAKEMRPGQRNNLDALCRHFGIDNSKRTLHGALLDAELLADVYLAMTRG 171


>gi|254429095|ref|ZP_05042802.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881]
 gi|196195264|gb|EDX90223.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881]
          Length = 246

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/241 (38%), Positives = 137/241 (56%), Gaps = 16/241 (6%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTGL+  +  R+IEIG VE+ +   T     ++L P  R+    AL +HGI
Sbjct: 1   MRQVVLDTETTGLEPNDGHRVIEIGCVEMENRRLTGNNLHLYLNPE-REIDAGALAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122
           + EFL DKP+F  +  EF  F +   AE + HNA FDVGF+N EL+R+        +   
Sbjct: 60  STEFLADKPTFDKVVDEFLAFVD--GAELVIHNAPFDVGFLNHELRRLGARYGTIEQRCG 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+KHP  +N+L++LC+RY +   HR  HGALLD+ +L+DVY+ M  G ++++
Sbjct: 118 VLDTLVMARQKHPGQKNNLDALCRRYFVENGHRELHGALLDAEILADVYLAMTGGQTRLS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT--RITKEELDEH-DKTIQTLGKNA---I 236
            G     D   +    T   I  L  D+P     R ++ E+  H DK     GKN    +
Sbjct: 178 LG---GNDGSEQGGDATAEAIRRLSADRPALAVVRPSESEMQRHNDKLTAIAGKNGEPTV 234

Query: 237 W 237
           W
Sbjct: 235 W 235


>gi|88703294|ref|ZP_01101010.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71]
 gi|88702008|gb|EAQ99111.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71]
          Length = 240

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/240 (40%), Positives = 136/240 (56%), Gaps = 16/240 (6%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S+  RIIEIG VE+ +   T R F  ++ P  R     A+++HGI
Sbjct: 1   MRQIVLDTETTGLEVSQGHRIIEIGCVEMENRQLTGRHFHRYINPE-RDIDAGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122
           T  FL DKP FS++  +F DF +   AE I HNA FD+GF+++EL R +   L  ++   
Sbjct: 60  TATFLADKPVFSAVAKDFIDFVD--GAELIIHNAPFDIGFLDSELSRWDASALPLAQRCD 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I DTL +AR +HP  RN L++LC RYG+  S R  HGALLD+ +L+DVY+ M   G Q  
Sbjct: 118 ITDTLIMARSRHPGQRNSLDALCGRYGVDNSSRELHGALLDAEILADVYLTMT--GGQTA 175

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI--TKEELDEHDK---TIQTLGKNAIW 237
                N+D    + +  V  +  L  D+     I  + EEL  H+    +I   G   +W
Sbjct: 176 LALGGNDDD--NQGRARVRGLRRLPADRVRLPVIQPSDEELAAHEGQLDSIAAAGAEPLW 233


>gi|254466659|ref|ZP_05080070.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I]
 gi|206687567|gb|EDZ48049.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I]
          Length = 241

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/248 (38%), Positives = 142/248 (57%), Gaps = 27/248 (10%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVEL ++  T +TF  ++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELYNHMPTGKTFHEYINPE-RSMPAEAFSVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             +DKP F+ I  +F DF   Q++  + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQKPEPGAVTLRDKPVFAKIGRKFLDFV--QDSRLVIHNASFDMKFLNAELDW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    L   + +DTL++AR++ P S   L++LC+R+ I  ++R+ HGALLDS +L+DVY+
Sbjct: 118 MGLPKLPMDQALDTLAMARKRFPGSPATLDALCRRFNIDNTNRTLHGALLDSEILADVYL 177

Query: 173 KMMVGGSQINFGF---KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
           + ++GG Q +FG     ++     +++ + VP      R  PL  RIT EE   H+  + 
Sbjct: 178 E-LIGGRQPDFGLSAQSSSSSAQVEDDWRPVP------RSAPLPARITAEEQAAHEAFVA 230

Query: 230 TLGKNAIW 237
            LG  A+W
Sbjct: 231 KLGDAALW 238


>gi|313201259|ref|YP_004039917.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688]
 gi|312440575|gb|ADQ84681.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688]
          Length = 234

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 86/174 (49%), Positives = 119/174 (68%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  ++  RIIEI AVE+++   T++ + V+L P+ R+    A ++HGI
Sbjct: 1   MRQIFLDTETTGLYPAQGHRIIEIAAVEVINRRITSQHYHVYLNPD-REIDAGAQEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL+DKP F+ +  EF DF   Q++E I HNA FDVGF+NAEL RI K  ++   S I
Sbjct: 60  TLEFLQDKPRFADVVGEFLDFV--QDSELIIHNAPFDVGFLNAELGRIEKPGIESVASGI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL +A+   P  RN+L++LC+ +GI  S R+ HGALLD+ LL+DVY+ M  G
Sbjct: 118 IDTLKMAKEMRPGQRNNLDALCRHFGIDNSKRTLHGALLDAELLADVYLAMTRG 171


>gi|254499192|ref|ZP_05111872.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12]
 gi|254351582|gb|EET10437.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12]
          Length = 232

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/232 (41%), Positives = 132/232 (56%), Gaps = 10/232 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+   +  R+IEIG VEL+D   T R F V+L P  R     A ++HGI
Sbjct: 1   MRQIVLDTETTGIGHEQGHRVIEIGCVELIDRKLTGRHFHVYLNPE-RLVDEGAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRI 123
           +DEFL+DKP F+   SEF  F     AE I HNA FD+GF+N+EL+ +   K   D   +
Sbjct: 60  SDEFLQDKPLFADKVSEFLQFVG--GAELIIHNAAFDMGFLNSELRHVQWKKKLEDYCDV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL+ AR K P  RN L++LCKR+GI   +R  HGALLD+ +L+ VY+ M  G S +  
Sbjct: 118 FDTLTYARDKFPGQRNSLDALCKRFGIDHFNRQLHGALLDAEILAFVYLAMTGGQSSLFA 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
             + N +         V  I+ L+   P+       ELD+H   ++ L K +
Sbjct: 178 DVEENANN----TTVKVQEIAALRLANPIVVLAEANELDQHQIFVEFLTKKS 225


>gi|218710290|ref|YP_002417911.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32]
 gi|218323309|emb|CAV19486.1| DNA polymerase III, epsilon subunit [Vibrio splendidus LGP32]
          Length = 255

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 94/244 (38%), Positives = 142/244 (58%), Gaps = 26/244 (10%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IV D ETTG++++        RI+EIGAVE+++   T R F V++ P+ R    EA+ 
Sbjct: 22  RIIVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYIKPD-RAIQEEAIG 80

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118
           +HGITDEFL DKP +  I  EF DF   + AE +AHNA FD GF++ E +++N       
Sbjct: 81  VHGITDEFLIDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLNPAIGKTD 138

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ +M GG
Sbjct: 139 DYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYL-LMTGG 197

Query: 179 S---QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
               Q N G +  E    +  +    ++ +L        R T +E++ H   +  + K+ 
Sbjct: 198 QTSLQFNAGQQEGEGESIRRAESGRKSLKVL--------RATADEVEAHQSRLDLVEKSG 249

Query: 236 --IW 237
             +W
Sbjct: 250 SCLW 253


>gi|330816255|ref|YP_004359960.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
 gi|327368648|gb|AEA60004.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
          Length = 240

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 92/240 (38%), Positives = 135/240 (56%), Gaps = 17/240 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VE+L+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRIIEIGCVEMLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ +     DF   + AE I HNA FD+GFI+AE +R+   PL+     +
Sbjct: 60  TTEFLSDKPKFAEVAHAICDFV--RGAELIIHNAPFDIGFIDAEFERVGLPPLNQHCDGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +  
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE------ELDEHDKTIQTLGKNAIW 237
               + D   +        +SL     P+      E      +LD+ DK+++      +W
Sbjct: 178 DMLGDGDD--EGGASGAARVSLATLALPVLAASEDELAAHLAQLDDLDKSVK---GACVW 232


>gi|197284137|ref|YP_002150009.1| DNA polymerase III subunit epsilon [Proteus mirabilis HI4320]
 gi|194681624|emb|CAR40653.1| DNA polymerase III, epsilon subunit [Proteus mirabilis HI4320]
          Length = 252

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/250 (38%), Positives = 150/250 (60%), Gaps = 21/250 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P  R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPE-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL+D PSF+ I  EF  +   + AE I HNA FD+GF++ E Q++N+D PL  +
Sbjct: 66  HGISDEFLEDCPSFAEIADEFLAYI--RGAELIIHNASFDIGFMDYEFQKLNRDIPLTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR   P  RN+L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCQITDSLAMARELFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILADVYLAMTGGQT 183

Query: 180 QINFGF--KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKN 234
            + F    ++NE++   + ++ V  +  L+       + + EEL  H+  +  +   G +
Sbjct: 184 ALAFSMEGESNEEQKGDDIQRIVRPVRGLR-----VIKASAEELVAHEARLDLVVKKGGH 238

Query: 235 AIWDRYISSN 244
            +W    +SN
Sbjct: 239 CLWRPAPASN 248


>gi|270156747|ref|ZP_06185404.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968]
 gi|289164806|ref|YP_003454944.1| DNA polymerase III, epsilon chain [Legionella longbeachae NSW150]
 gi|269988772|gb|EEZ95026.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968]
 gi|288857979|emb|CBJ11839.1| putative DNA polymerase III, epsilon chain [Legionella longbeachae
           NSW150]
          Length = 233

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/232 (41%), Positives = 136/232 (58%), Gaps = 10/232 (4%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTG+  ++  R+IEIG VEL+D   T   F V+L P  R     A ++HGI
Sbjct: 1   MRQVVLDTETTGIGHEHGHRVIEIGCVELIDRKLTGNHFHVYLNPQ-RLVDEGAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRI 123
           ++EFL+DKP F+ +  +FW F +   AE I HNA FDVGF+N+ELQ IN  K      +I
Sbjct: 60  SNEFLQDKPLFADVAEKFWRFIS--GAELIIHNAPFDVGFLNSELQLINWNKKLEVYCKI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL +AR K+P  RN L++LCKRYGI   +R  HGALLD+ +L+ VY+ M  G + +  
Sbjct: 118 TDTLVLAREKYPGQRNSLDALCKRYGIDHFNRELHGALLDAEILAFVYLAMTGGQTSL-- 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            F   E+       K+   ++ L  +  +    + EEL+ H   I  L K +
Sbjct: 176 -FAEVEETSLHVNSKSQETVA-LHLENSVVLPASAEELESHQLFIDFLHKKS 225


>gi|254514367|ref|ZP_05126428.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR5-3]
 gi|219676610|gb|EED32975.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR5-3]
          Length = 240

 Score =  162 bits (409), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/241 (39%), Positives = 138/241 (57%), Gaps = 18/241 (7%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S+  RIIEIG VEL +   T R F  ++ P  R     A+++HGI
Sbjct: 1   MRQIVLDTETTGLEVSQGHRIIEIGCVELQNRLLTGRHFHRYINPE-RDIDAGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122
           T  FL DKP FS++  +F DF +   AE I HNA FD+GF+++EL RI+   L  ++   
Sbjct: 60  TATFLADKPVFSAVAKDFVDFVD--GAELIIHNAPFDIGFLDSELSRIDPAALPLAQRCE 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I DTL +AR +HP  RN L++LC+RY +  S R  HGALLD+ +L+DVY+ M  G + + 
Sbjct: 118 ITDTLVMARSRHPGQRNSLDALCQRYAVDNSSRDLHGALLDAEILADVYLTMTGGQTALA 177

Query: 183 FGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRI--TKEELDEHDK---TIQTLGKNAI 236
            G    +      + +T P  +  L  ++P    I  +  EL  H+    +I   G   +
Sbjct: 178 LGGDDGD-----SQGRTRPRGLIRLPENRPRLPVIEPSDSELAAHEAQLDSIAAAGTEPL 232

Query: 237 W 237
           W
Sbjct: 233 W 233


>gi|161525206|ref|YP_001580218.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
           17616]
 gi|189350055|ref|YP_001945683.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
           17616]
 gi|160342635|gb|ABX15721.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC
           17616]
 gi|189334077|dbj|BAG43147.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 244

 Score =  162 bits (409), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/238 (40%), Positives = 135/238 (56%), Gaps = 13/238 (5%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL++++ DRIIEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARSGDRIIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ I  +  DF   + AE I HNA FD+GF++AE   +   P     + +
Sbjct: 60  TTEFLSDKPKFAEIAHQILDFV--KGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
                +D            +SL   D P+    T EEL EH   +  L K+     +W
Sbjct: 176 VIDMLDDDAGGAGAANGQRVSLAALDLPVLAA-TAEELAEHQAQLDDLDKSVKGACVW 232


>gi|134295347|ref|YP_001119082.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
 gi|134138504|gb|ABO54247.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 244

 Score =  162 bits (409), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 94/240 (39%), Positives = 136/240 (56%), Gaps = 17/240 (7%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ ++ DR+IEIG VELL+   T     +++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNPRSGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ +  +  DF   + AE I HNA FD+GF++AE  R+   P       +
Sbjct: 60  TTEFLSDKPKFAEVADQIRDFV--KGAELIIHNAPFDLGFLDAEFARLGLPPFIEHCDGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLAEAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE------ELDEHDKTIQTLGKNAIW 237
                +D            ISL   D P+      E      +LDE DK+++      +W
Sbjct: 176 VIDMLDDAGADGGTANGQRISLASLDLPVVAASDDELAAHQAQLDELDKSVK---GTCVW 232


>gi|221201955|ref|ZP_03574991.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
 gi|221204915|ref|ZP_03577932.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
 gi|221213892|ref|ZP_03586865.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
 gi|221166069|gb|EED98542.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
 gi|221175772|gb|EEE08202.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
 gi|221178038|gb|EEE10449.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
          Length = 244

 Score =  162 bits (409), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/238 (40%), Positives = 134/238 (56%), Gaps = 13/238 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRIIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ I  +  DF   + AE I HNA FD+GF++AE   +   P     + +
Sbjct: 60  TTEFLSDKPKFAEIAHQILDFV--KGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
                +D            +SL   D P+    T EEL EH   +  L K+     +W
Sbjct: 176 VIDMLDDDAGGAGAANGQRVSLAALDLPVLAA-TAEELAEHQAQLDDLDKSVKGACVW 232


>gi|88800079|ref|ZP_01115649.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297]
 gi|88777205|gb|EAR08410.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297]
          Length = 238

 Score =  162 bits (409), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 82/180 (45%), Positives = 117/180 (65%), Gaps = 12/180 (6%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTGL+ +K DRI+E+G VE++D   T R F  ++ P  R    E + +HGI
Sbjct: 1   MRQVVLDTETTGLNPTKGDRIVEVGCVEMVDRKLTGRHFHYYINPE-RDIPDEVVAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----- 120
            ++ +KD P F  I  E W +   + AE + HNA FD+GF+NAE +R  ++  +P     
Sbjct: 60  DNDKVKDSPKFRDIAVELWTWL--EGAELVIHNAAFDMGFLNAEFERFAQEQREPFEKLE 117

Query: 121 --SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               ++DTL +AR KHP S+  L++LCKRYGI  SHR+ HGALLDS +L+DVY+ M+ GG
Sbjct: 118 TVCGVLDTLKVARDKHPGSKVSLDALCKRYGIDNSHRTLHGALLDSEILADVYL-MLTGG 176


>gi|254796828|ref|YP_003081665.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str.
           Illinois]
 gi|254590057|gb|ACT69419.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str.
           Illinois]
          Length = 228

 Score =  162 bits (409), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 97/241 (40%), Positives = 142/241 (58%), Gaps = 27/241 (11%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           RK++ D ETTGLD KN DR+IEIG VE++D+  T   F ++L P  R+ S EA ++HGIT
Sbjct: 5   RKVILDTETTGLDMKNGDRVIEIGCVEMVDFRITGEIFHIYLNPE-REISKEATRVHGIT 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
            E L D P F  I  +F  F    ++E +AHNA FD+ F+N+EL R  +  L     +ID
Sbjct: 64  FEQLADSPKFIDIADDFLQFIG--SSEIVAHNASFDIRFLNSELIRARQRRLIKLENVID 121

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR+  P S   L++LC+R+ I++  R  HGALLD+ LL+ VYI++   GSQ++  F
Sbjct: 122 TLAMARKIFPGSPASLDALCRRFRISLEQREFHGALLDAQLLARVYIELS-KGSQVSMSF 180

Query: 186 -----KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
                 ++E + FKE +K +               IT EE   H + I+ L K+ +WD  
Sbjct: 181 LEGSSASSEKKMFKEREKLI---------------ITPEESLAHSELIKRL-KDPLWDEI 224

Query: 241 I 241
           +
Sbjct: 225 L 225


>gi|58040389|ref|YP_192353.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H]
 gi|58002803|gb|AAW61697.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H]
          Length = 228

 Score =  162 bits (409), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 97/235 (41%), Positives = 134/235 (57%), Gaps = 13/235 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I+FD ETTG D    DRIIEI A+EL+D   T   + V + P  R    EA K+HG  
Sbjct: 3   RSILFDTETTGFDPDMGDRIIEIAALELIDDLPTGEAYHVLIHPE-RDIPAEATKVHGFR 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIID 125
            E L+ KP FS +   F +F    ++  IAHNA+FD  F+NAEL+   ++PLD  SR ID
Sbjct: 62  IEDLEGKPIFSEVADGFLEFIG--DSPMIAHNARFDFKFVNAELKACGREPLDYASRAID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +AR+K+P     L++LC+R+GI +S R  H ALLD  LL++VY+++M GG Q   G 
Sbjct: 120 TVEMARKKYPGLPASLDALCRRFGIDLSQRGTHNALLDCKLLAEVYVELM-GGRQRGLGL 178

Query: 186 K-TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
              +  R   E    + N    K   P     T EEL  H+  + T+ K+A+W R
Sbjct: 179 AGPSRSRSMTEGINALANRKPRKMAPP-----TAEELQAHEAFVSTI-KDAVWLR 227


>gi|227357997|ref|ZP_03842339.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906]
 gi|227161732|gb|EEI46764.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906]
          Length = 252

 Score =  161 bits (408), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 96/250 (38%), Positives = 149/250 (59%), Gaps = 21/250 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P  R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPE-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL+D PSF+ I  EF  +   + AE I HNA FD+GF++ E Q++N+D PL  +
Sbjct: 66  HGISDEFLEDCPSFAEIADEFLAYI--RGAELIIHNASFDIGFMDYEFQKLNRDIPLTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR   P  RN+L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCQITDSLAMARELFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILADVYLAMTGGQT 183

Query: 180 QINFGF--KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKN 234
            + F    + NE++   + ++ V  +  L+       + + EEL  H+  +  +   G +
Sbjct: 184 ALAFSMEGEPNEEQKGDDIQRIVRPVRGLR-----VIKASAEELVAHEARLDLVVKKGGH 238

Query: 235 AIWDRYISSN 244
            +W    +SN
Sbjct: 239 CLWRPAPASN 248


>gi|86146863|ref|ZP_01065182.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
 gi|85835315|gb|EAQ53454.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
          Length = 255

 Score =  161 bits (408), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 93/244 (38%), Positives = 142/244 (58%), Gaps = 26/244 (10%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++++        RI+EIGAVE+++   T R F V++ P+ R    EA+ 
Sbjct: 22  RIVVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRRLTGRHFHVYIKPD-RAIQEEAIG 80

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118
           +HGITDEFL DKP +  I  EF DF   + AE +AHNA FD GF++ E +++N       
Sbjct: 81  VHGITDEFLIDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLNPAIGKTD 138

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ +M GG
Sbjct: 139 DYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYL-LMTGG 197

Query: 179 S---QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
               Q N G +  E    +  +    ++ +L        R T +E++ H   +  + K+ 
Sbjct: 198 QTSLQFNAGQQEGEGESIRRAESGRKSLKVL--------RATADEVEAHQSRLDLVEKSG 249

Query: 236 --IW 237
             +W
Sbjct: 250 SCLW 253


>gi|21230449|ref|NP_636366.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769557|ref|YP_244319.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992765|ref|YP_001904775.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112012|gb|AAM40290.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574889|gb|AAY50299.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734525|emb|CAP52735.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           campestris]
          Length = 245

 Score =  161 bits (408), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 137/239 (57%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLRPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           T EFL DKP F+ +  EF  + +   AE I HNA FD+GF++ EL  +       +D + 
Sbjct: 60  TLEFLADKPVFAEVVEEFLAYID--GAELIIHNAAFDLGFLDNELSLLGDQFGRIIDRAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           FG           E     + SLL   +P    +T  EL  H+  ++ L K    A+WD
Sbjct: 178 FGAMDAGQHAEGGEGMIAFDPSLLL-PRPRVV-VTPSELQAHEARLERLRKKAGRALWD 234


>gi|319775991|ref|YP_004138479.1| DNA polymerase III subunit epsilon [Haemophilus influenzae F3047]
 gi|329123857|ref|ZP_08252414.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           aegyptius ATCC 11116]
 gi|317450582|emb|CBY86799.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3047]
 gi|327468820|gb|EGF14294.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           aegyptius ATCC 11116]
          Length = 256

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 99/260 (38%), Positives = 146/260 (56%), Gaps = 29/260 (11%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG+       +  RIIEIGAVEL++   T   F +++ P+ R   P+A
Sbjct: 3   NPNRQIVLDTETTGMSQLGAHYEGHRIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           +K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E  ++N +   
Sbjct: 62  IKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFHKLNLNVKT 119

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ MM G
Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178

Query: 178 GSQINF---------GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
           G    F           +  +++  +E K  V     LK  +P     T +EL  H + +
Sbjct: 179 GQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQP-----TNDELQAHLEFL 233

Query: 229 QTL----GKNAIWDRYISSN 244
           + +    G N +WD+   +N
Sbjct: 234 KMMNKKSGNNCLWDKRFGNN 253


>gi|167949084|ref|ZP_02536158.1| DNA polymerase III, epsilon subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 203

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 82/181 (45%), Positives = 120/181 (66%), Gaps = 7/181 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+  +  RIIEIG VE++D   +   F  +L P+ R+    A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPQQGHRIIEIGCVEMIDRRLSGNNFHQYLQPD-REIDAGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PL-DPSR 122
           T+EFL DKP F+ + ++F D+   + AE I HNA FDVGF+N ELQ +  D  P+ +   
Sbjct: 60  TNEFLADKPRFADLAADFLDYI--RGAELIIHNAPFDVGFLNHELQLMGADSPPIGELCA 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDTL +A++ HP  RN L++LCKRY +  + R  HGALLD+ +L+DVY+ M  G + ++
Sbjct: 118 VIDTLVMAKKMHPGQRNSLDALCKRYDVDNTQRELHGALLDAEILADVYLAMTGGQATLS 177

Query: 183 F 183
            
Sbjct: 178 L 178


>gi|254508645|ref|ZP_05120760.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16]
 gi|219548402|gb|EED25412.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16]
          Length = 247

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 97/252 (38%), Positives = 143/252 (56%), Gaps = 33/252 (13%)

Query: 5   NKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           N+ R +V D ETTG++ +        RIIEIGAVE+++   T R F V++ P+ R    E
Sbjct: 8   NQHRIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RDIQAE 66

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A+++HGITDEFL DKP +  + +EF +F   + AE +AHNA FD GF++ E +      L
Sbjct: 67  AVQVHGITDEFLVDKPEYQDVHAEFLEFI--KGAELVAHNAPFDTGFMDYEFEM-----L 119

Query: 119 DPS--------RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           DPS        ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DV
Sbjct: 120 DPSIGKTDDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADV 179

Query: 171 YIKMMVGGS---QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
           Y+ +M GG    Q N G     D   +  K+       LK       R + +EL+ H   
Sbjct: 180 YL-LMTGGQTSLQFNAGNSDGSDVGGESIKRVASGRKALK-----VIRASADELEAHQNR 233

Query: 228 IQTLGKNA--IW 237
           +  + K+   +W
Sbjct: 234 LDIVEKSGSCLW 245


>gi|192359256|ref|YP_001982513.1| DNA polymerase III subunit epsilon [Cellvibrio japonicus Ueda107]
 gi|190685421|gb|ACE83099.1| DNA polymerase III, epsilon subunit [Cellvibrio japonicus Ueda107]
          Length = 237

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 94/241 (39%), Positives = 134/241 (55%), Gaps = 17/241 (7%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S+  RIIEIG VEL++   T R +  ++ P  R+    A  +HGI
Sbjct: 1   MRQIVLDTETTGLEYSQGHRIIEIGCVELMNRRLTGRHYHQYINPE-REVDAGAFAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           ++  L DKP F+ I  +F +F  +  AE I HNA FD+GFI+ EL  +            
Sbjct: 60  SNAMLNDKPVFARIVDDFLNFVGD--AELIIHNAAFDIGFIDHELNMLRPGFGSIKGRCG 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDTL +AR KHP  +N+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M   G Q +
Sbjct: 118 VIDTLLLARNKHPGQKNNLDALCKRYGVDNSQRDLHGALLDAEILADVYLAMT--GGQTS 175

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI--TKEELDEHDKTIQTL----GKNAI 236
                N+ +   E       I  L   +P    I  + EEL  H++ +  +    G N +
Sbjct: 176 LSLGGNQAK--AEGGGNQEGIRRLSSQRPALRVISASAEELQAHEEKLAAIARSSGDNCL 233

Query: 237 W 237
           W
Sbjct: 234 W 234


>gi|145299712|ref|YP_001142553.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852484|gb|ABO90805.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 244

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 87/190 (45%), Positives = 123/190 (64%), Gaps = 11/190 (5%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+I+ D ETTG+++         RIIEIG VE+++   T   + V++ P+ R   PEA++
Sbjct: 8   RQIILDTETTGMNTAGGPIYLGHRIIEIGCVEVINRKLTGNHYHVYIKPD-RLVDPEAIQ 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLD 119
           +HGITD FL DKPSFS I ++F DF   + AE IAHNA FDV F++ E  ++  N    D
Sbjct: 67  VHGITDVFLADKPSFSQIANDFIDFI--RGAELIAHNAPFDVSFMDYEFGKLGLNFKTRD 124

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I DTL+IAR   P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G +
Sbjct: 125 ICSITDTLAIARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQT 184

Query: 180 QINFGFKTNE 189
           ++N   +++E
Sbjct: 185 KLNLATESSE 194


>gi|104782586|ref|YP_609084.1| DNA polymerase III subunit epsilon [Pseudomonas entomophila L48]
 gi|95111573|emb|CAK16293.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudomonas entomophila L48]
          Length = 251

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 95/241 (39%), Positives = 133/241 (55%), Gaps = 11/241 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+      RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDQRLVILDTETTGMPVGDGHRIIEIGCVEVMGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPL 118
           + +HGITD FL  KP F  +  EF++F   + A  + HNA FDVGFIN E   + + D  
Sbjct: 60  IGVHGITDAFLVGKPRFGDVAQEFFEFI--EGATLVIHNAAFDVGFINNEFALLGQHDRA 117

Query: 119 DPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D S+   I+DTL +AR +HP  RN L++LCKRYGI  S R  HGALLDS LL+DVY+ M 
Sbjct: 118 DISQHCSILDTLMMARSRHPGQRNSLDALCKRYGIDNSGRELHGALLDSELLADVYLAMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLK-RDKPLFTRITKEELDEHDKTIQTLGKN 234
             G Q +     +  +    +  T   I  +  R         +EEL  H + +  + K+
Sbjct: 178 --GGQTSLSLAGDGAQSEDGQGGTGSEIRRISGRAAGRVIMANEEELQAHAERLAAIAKS 235

Query: 235 A 235
           A
Sbjct: 236 A 236


>gi|152978551|ref|YP_001344180.1| DNA polymerase III subunit epsilon [Actinobacillus succinogenes
           130Z]
 gi|150840274|gb|ABR74245.1| DNA polymerase III, epsilon subunit [Actinobacillus succinogenes
           130Z]
          Length = 259

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 99/250 (39%), Positives = 145/250 (58%), Gaps = 16/250 (6%)

Query: 7   MRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R+IV D ETTG++      +   IIEIGAVEL++   T R   +++ P+ R   PEA+K
Sbjct: 8   IRQIVLDTETTGMNQFGAHYEGHCIIEIGAVELINRKYTGRKLHLYVKPD-RPIDPEAIK 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLD 119
           +HGITDE L DKP FS++  EF DF   ++AE + HNA FDVGF++ E ++  I+    D
Sbjct: 67  VHGITDEMLADKPDFSTVAQEFIDFI--KDAELLIHNAPFDVGFMDYEFRKHHIDIKTAD 124

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              + DTL +ARR++P  RN+L++LC R  I  S R+ HGALLD+ +L DVY+  M GG 
Sbjct: 125 ICTVTDTLQMARRQYPGKRNNLDALCDRLHIDNSKRTLHGALLDAEILGDVYLA-MTGGQ 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT-RITKEELDEHDKTIQTLGK----N 234
              F  +  E    K E+     I +    + L    +T+EEL  H + +  + K    N
Sbjct: 184 VSLFAEEETEISVQKTEEIEEEFIPVQVSSEGLIALPLTEEELAAHTEYLSLINKKSKDN 243

Query: 235 AIWDRYISSN 244
            IW + +S +
Sbjct: 244 CIWIKRLSPD 253


>gi|83720697|ref|YP_443303.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           E264]
 gi|257139540|ref|ZP_05587802.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           E264]
 gi|83654522|gb|ABC38585.1| DNA polymerase III, epsilon subunit [Burkholderia thailandensis
           E264]
          Length = 241

 Score =  161 bits (407), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 92/238 (38%), Positives = 137/238 (57%), Gaps = 13/238 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIE+G VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL+DKP F+ I  +  DF   ++AE I HNA FD+GF++AE   +         + +
Sbjct: 60  TTEFLRDKPKFADIVDQLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPAFSDHCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
                ++      K   P ++    D P+    T EEL +H+  +  L K+     +W
Sbjct: 176 VIDMLDEAGDAHRKGDEPQMAFSGLDLPVLA-ATDEELADHEAQLDALDKSVKGACVW 232


>gi|170722630|ref|YP_001750318.1| DNA polymerase III subunit epsilon [Pseudomonas putida W619]
 gi|169760633|gb|ACA73949.1| DNA polymerase III, epsilon subunit [Pseudomonas putida W619]
          Length = 254

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 94/240 (39%), Positives = 130/240 (54%), Gaps = 8/240 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+  S+  RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDKRLVILDTETTGMPVSEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINK 115
           + +HGITD FL  KP F  +  EF++F   Q A  + HNA FDVGFIN E     QR   
Sbjct: 60  INVHGITDAFLVGKPRFGDVAEEFFEFI--QGATLVIHNAAFDVGFINNEFALLGQRDRA 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D      I+DTL +AR +HP  RN L++LCKRY I  S R  HGALLDS LL+DVY+ M 
Sbjct: 118 DISQHCTILDTLLLARARHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            G + ++      +     +         +  R        T EEL+ H + +  + K+A
Sbjct: 178 GGQTSLSLAGNGADGDNEGQGSGGSEIRRITGRAPGRVIMATAEELEAHAERLAAIAKSA 237


>gi|206559631|ref|YP_002230392.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia J2315]
 gi|198035669|emb|CAR51556.1| DNA polymerase III, epsilon chain [Burkholderia cenocepacia J2315]
          Length = 244

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 93/240 (38%), Positives = 135/240 (56%), Gaps = 17/240 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ +  +  DF   ++AE I HNA FD+GF++AE  R+   P       +
Sbjct: 60  TTEFLSDKPKFAEVAHQILDFV--KDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE------ELDEHDKTIQTLGKNAIW 237
                +D            +SL   D P+      E      +LDE DK+++      +W
Sbjct: 176 VIDMLDDASADGGAANGKRVSLAALDLPVVVASDDELAAHQAQLDELDKSVK---GTCVW 232


>gi|290476066|ref|YP_003468963.1| DNA polymerase III subunit epsilon [Xenorhabdus bovienii SS-2004]
 gi|289175396|emb|CBJ82199.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Xenorhabdus bovienii SS-2004]
          Length = 249

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 95/244 (38%), Positives = 145/244 (59%), Gaps = 23/244 (9%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F +++ P  R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRHFHLYIKPE-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119
           HGI+DEFL+DKP+F+ I  EF +F   + AE I HNA FD+GF++ E +++N+D     D
Sbjct: 66  HGISDEFLQDKPTFADIADEFIEFI--RGAELIIHNATFDIGFMDYEFRKLNRDIPPTAD 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +AR+  P  RN+LN+LC RY I  S R+ HGALLD+ +LSDVY+ M  G +
Sbjct: 124 FCTITDSLVLARQLFPGKRNNLNALCDRYQIDNSKRTLHGALLDAEILSDVYLTMTGGQT 183

Query: 180 QINFGFK---TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GK 233
            + F  +   +   +  + +K T P   L    K ++   + EEL +H+  +  +   G 
Sbjct: 184 SLTFSMEGEISGGAQMAEIQKITRPQTGL----KVIYA--SDEELLQHESRLDLVEKKGG 237

Query: 234 NAIW 237
           + +W
Sbjct: 238 SCLW 241


>gi|77166266|ref|YP_344791.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani ATCC
           19707]
 gi|254435200|ref|ZP_05048707.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani AFC27]
 gi|76884580|gb|ABA59261.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani ATCC
           19707]
 gi|207088311|gb|EDZ65583.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani AFC27]
          Length = 243

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 99/251 (39%), Positives = 140/251 (55%), Gaps = 24/251 (9%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ K   RIIEIG VEL    +T RTF  +L P  R+    ALK+HG+
Sbjct: 1   MRQIILDTETTGLEPKEGHRIIEIGGVELSCRRRTGRTFHCYLNPE-REVDKGALKIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-------QRINKDPL 118
           ++EFL DKP F  I  EF  F   + AE + HNA FDVGF++ EL        +I+ D  
Sbjct: 60  SNEFLSDKPRFIEIAEEFLAFI--EGAELVIHNAPFDVGFLDHELCLLGSKWGKISTD-- 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              +++DTL +AR++HP  +N+L++LCKRYGI  S R  HGALLD+ +L+ VY+ M   G
Sbjct: 116 --CQVLDTLQLARQRHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILAGVYLAMT--G 171

Query: 179 SQINFGFKTNEDRF--FKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----G 232
            Q++       D    F+        +S  +R      R ++EE   HD  +  +    G
Sbjct: 172 GQVSLSLHEYGDNGLPFRVGGGNYRPVS-AERASLTIARASREERMAHDARLTAIDKASG 230

Query: 233 KNAIWDRYISS 243
              +W +  SS
Sbjct: 231 GACLWRQLDSS 241


>gi|167582322|ref|ZP_02375196.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           TXDOH]
 gi|167620419|ref|ZP_02389050.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis Bt4]
          Length = 241

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/238 (38%), Positives = 137/238 (57%), Gaps = 13/238 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIE+G VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL+DKP F+ I  +  DF   ++AE I HNA FD+GF++AE   +         + +
Sbjct: 60  TTEFLRDKPKFADIVDQLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPAFSDHCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
                ++      K   P ++    D P+    T EEL +H+  +  L K+     +W
Sbjct: 176 VIDMLDEAGDAHRKGDEPRMAFSGLDLPVLA-ATDEELADHEAQLDALDKSVKGACVW 232


>gi|301168790|emb|CBW28381.1| DNA polymerase III epsilon subunit [Haemophilus influenzae 10810]
          Length = 255

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/259 (38%), Positives = 149/259 (57%), Gaps = 28/259 (10%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R   P+A
Sbjct: 3   NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           +K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N +   
Sbjct: 62  IKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  RN+L++LC+R GI  S R+ HGALLD+ +L+DVY+ MM G
Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCERLGIDNSKRTLHGALLDAEILADVYL-MMTG 178

Query: 178 GSQINFGFKTNEDRFF-------KEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQ 229
           G    F  ++ E            EE K+  + S  LK  +P     T +EL  H + ++
Sbjct: 179 GQTNLFDEESVESEVIHVMQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLEFLK 233

Query: 230 TL----GKNAIWDRYISSN 244
            +    G N +WD+   +N
Sbjct: 234 MMNKKSGNNCLWDKRFGNN 252


>gi|167034708|ref|YP_001669939.1| DNA polymerase III subunit epsilon [Pseudomonas putida GB-1]
 gi|166861196|gb|ABY99603.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1]
          Length = 252

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/240 (39%), Positives = 132/240 (55%), Gaps = 8/240 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+   +  RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPL 118
           + +HGITD FL  KP F  +  EF++F   Q A  + HNA FDVGFIN E   I + D  
Sbjct: 60  INVHGITDAFLVGKPRFGDVAEEFFEFI--QGATLVIHNAAFDVGFINNEFALIGQQDRA 117

Query: 119 DPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D S+   I+DTL +AR +HP  RN L++LCKRY I  S R  HGALLDS LL+DVY+ M 
Sbjct: 118 DVSQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            G + ++      +      E        +  R        + EEL+ H + +  + K+A
Sbjct: 178 GGQTSLSLAGHGADAEGEGSEAGGSEIRRITGRTPGRVIMASAEELEAHAERLAAIAKSA 237


>gi|119471754|ref|ZP_01614114.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Alteromonadales bacterium TW-7]
 gi|119445377|gb|EAW26665.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Alteromonadales bacterium TW-7]
          Length = 237

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/237 (38%), Positives = 142/237 (59%), Gaps = 13/237 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG+D K   RIIEIG VEL++   T   F V++ P  R    EA+ +HGIT
Sbjct: 4   RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQ-RSIEEEAIDVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSRI 123
           +EFL+DKP +  I  EF+D+   + AE + HNA FDVG ++ E   +N+   +  D  ++
Sbjct: 63  NEFLRDKPLYRDIAQEFFDYI--KGAELVIHNAPFDVGHMDNEFALLNQGFPNTHDYCQV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR  HP  +N+L++LC+RY I  + R+ HGALLDS +L+DVY+ M  G +++N 
Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDIDNAKRTLHGALLDSEILADVYLAMTGGQTKLN- 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIW 237
               N+D   ++++  +  ++  +R   +  R T EE   H+  +  +   G   +W
Sbjct: 180 -LNQNKDDGSEQQQGGIRRLN-SERAPLVVLRATDEEQSAHEARLDLVNKEGGQCLW 234


>gi|260767799|ref|ZP_05876734.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260617308|gb|EEX42492.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
          Length = 246

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/243 (38%), Positives = 138/243 (56%), Gaps = 22/243 (9%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R    EA++
Sbjct: 11  RIVVLDTETTGMNLEGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RAIQDEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-----KD 116
           +HGITDEFL DKP +  +  EF DF   + AE +AHNA FDVGF++ E  +++      D
Sbjct: 70  VHGITDEFLVDKPEYKDVHEEFLDFI--RGAELVAHNAPFDVGFMDYEFSKLSIPTAKTD 127

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            L   ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  
Sbjct: 128 EL--CKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTG 185

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA- 235
           G + + F   + E+       K V       R      R T +E+  H   +  + K+  
Sbjct: 186 GQTSLQFSGSSQENGMGAGAIKRVAE----GRKALKVLRATADEIQAHQDRLDIVEKSGT 241

Query: 236 -IW 237
            +W
Sbjct: 242 CLW 244


>gi|323526835|ref|YP_004228988.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001]
 gi|323383837|gb|ADX55928.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001]
          Length = 244

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/174 (46%), Positives = 114/174 (65%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRIIE+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARTGDRIIEVGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ I  EF DF   Q A+ I HNA FD+GF++AE   +   P+      I
Sbjct: 60  TTEFLSDKPKFAEIADEFRDFI--QGADLIIHNAPFDIGFLDAEFALLGLPPVSTHCGEI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G
Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171


>gi|30248167|ref|NP_840237.1| DNA polymerase III (epsilon chain) protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30180052|emb|CAD84052.1| probable DNA polymerase III (epsilon chain) protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 232

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/239 (38%), Positives = 137/239 (57%), Gaps = 15/239 (6%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +  D ETTGLD +   RI+EI AVE+ +   T+R F  +L P GR++   AL++HG+
Sbjct: 1   MRYVFLDTETTGLDPALGHRIVEIAAVEVCNRRLTDRHFHRYLNP-GRESDEGALRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T EFL+DKP F  + SEF +F    +AE   HNA FDVGFIN EL  I  + +     +I
Sbjct: 60  TREFLRDKPVFQDVCSEFLEFI--ADAEIFIHNAPFDVGFINRELDLIRFESMQNHCLQI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +A+  HP  RN+L++LC+RY I  SHR+ HGALLD+ LL++VY+ M  G   +  
Sbjct: 118 IDTLVLAKELHPGKRNNLDALCERYQIDNSHRTLHGALLDAELLAEVYLAMTRGQESLLM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                  R     +   P +  ++    +    T+ EL+ H + ++ +      N +W+
Sbjct: 178 EMDAPASR-----QADNPAVGKVENLALIVQPATQAELELHSRLVERINAESKGNCLWN 231


>gi|167562346|ref|ZP_02355262.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis
           EO147]
 gi|167574356|ref|ZP_02367230.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis
           C6786]
          Length = 240

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/244 (38%), Positives = 137/244 (56%), Gaps = 13/244 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P GR + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRVIEIGCVELLNRRLTGNNLHFYVNP-GRDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL DKP F+ I  E  DF   ++AE I HNA FD+GF++AE   +         + +
Sbjct: 60  TTEFLSDKPKFAEIVDELRDFV--RDAELIIHNAPFDLGFLDAEFSLLGLPTFTDHCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                ++          P ++    D P+    T +EL  H+  +  L K+     +W +
Sbjct: 176 VIDMLDEGGDAHRNGDAPRMAFSGLDLPVLA-ATDDELAAHEAQLDALDKSVKGACVWRK 234

Query: 240 YISS 243
              S
Sbjct: 235 EAGS 238


>gi|146307095|ref|YP_001187560.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina ymp]
 gi|145575296|gb|ABP84828.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
          Length = 252

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/221 (41%), Positives = 130/221 (58%), Gaps = 11/221 (4%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+  +   RIIEIG VELL    T R F V+L P+ R+    A+ +HGIT
Sbjct: 9   RYVVLDTETTGMPVTDGHRIIEIGCVELLGRRLTGRHFHVYLNPD-REIDEGAIAVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPSR 122
           +E++ DKP F  +  EF++F   + A+ I HNA FDVGFIN E   + +    D  D   
Sbjct: 68  NEYVADKPRFRDVADEFYEFI--KGAQLIIHNAAFDVGFINNEFALLGQSERADVSDYCS 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR +HP  RN L++LCKRYG+  S+R  HGALLDS +L+DVY+ M  G + ++
Sbjct: 126 VLDTLMMARERHPGQRNSLDALCKRYGVDNSNRELHGALLDSEILADVYLAMTGGQTHLS 185

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
              +   D      ++  P I  L   +P  TR+ +   DE
Sbjct: 186 LAGE-GADSDGSGRQQATP-IRRLDAARPR-TRVIRASEDE 223


>gi|37524935|ref|NP_928279.1| DNA polymerase III subunit epsilon [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784361|emb|CAE13238.1| DNA polymerase III epsilon chain [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 248

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/246 (39%), Positives = 143/246 (58%), Gaps = 27/246 (10%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R++V D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA ++
Sbjct: 7   RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIQPD-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119
           HGI+DEFL+DKP F+ I  EF +F   + AE I HNA FD+GFI+ E  ++N+D     D
Sbjct: 66  HGISDEFLQDKPLFADIADEFIEFI--RGAELIIHNAPFDIGFIDYEFGKLNRDIPPTAD 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR   P  RN+L++LC RY I  S R+ HGALLD+ +LSDVY+ M  G +
Sbjct: 124 FCKITDSLQLARGLFPGKRNNLDALCDRYDIDNSKRTLHGALLDAEILSDVYLIMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKR-DKPLFT----RITKEELDEHDKTIQTL--- 231
            + F  +         E  +  N+S ++R  +P         T EEL  H+  +  +   
Sbjct: 184 SLAFSMEG--------EIASGANVSEIQRITRPQMALKVIYATDEELAAHESRLDLVEKK 235

Query: 232 GKNAIW 237
           G + +W
Sbjct: 236 GGSCLW 241


>gi|145628970|ref|ZP_01784769.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21]
 gi|144978473|gb|EDJ88196.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21]
          Length = 256

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/260 (38%), Positives = 147/260 (56%), Gaps = 29/260 (11%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R   P+A
Sbjct: 3   NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           +K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N +   
Sbjct: 62  IKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ MM G
Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178

Query: 178 GSQINF---------GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
           G    F           +  +++  +E K  V     LK  +P     T +EL  H + +
Sbjct: 179 GQTNLFDEEESVESEVIRVVQEKAAEEIKSAVDFSHNLKLLQP-----TNDELQAHLELL 233

Query: 229 QTL----GKNAIWDRYISSN 244
           + L    G N +WD+   +N
Sbjct: 234 KMLNKKSGNNCLWDKRFGNN 253


>gi|329894914|ref|ZP_08270713.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088]
 gi|328922643|gb|EGG29978.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088]
          Length = 247

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/185 (45%), Positives = 118/185 (63%), Gaps = 11/185 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S   R+IEIG VEL++   + R F  ++ P  R+  P A+++HGI
Sbjct: 1   MRQIVLDTETTGLETSDGHRVIEIGCVELINRRLSGRHFHQYINPQ-REVDPGAMEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----- 120
           ++EFL+DKP FS+I  EF +F   + AE I HNA FD+GF++ EL   ++    P     
Sbjct: 60  SNEFLQDKPLFSAIADEFLEFI--KGAELIIHNAPFDIGFLDYELSLESERRAAPMPTVE 117

Query: 121 --SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               +IDTL +ARRKHP  RN L++LC RY +  S R  HGALLDS +L+DVY+ M  G 
Sbjct: 118 SLCGVIDTLVMARRKHPGQRNTLDALCTRYDVDNSSRDLHGALLDSEILADVYLAMTGGQ 177

Query: 179 SQINF 183
           + +  
Sbjct: 178 TALTL 182


>gi|254437617|ref|ZP_05051111.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           307]
 gi|198253063|gb|EDY77377.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           307]
          Length = 242

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/251 (37%), Positives = 146/251 (58%), Gaps = 28/251 (11%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + S+ DRI+EIGA+EL ++  T RT+  ++ P  R     A  +HGI
Sbjct: 1   MREIVLDTETTGFEPSEGDRIVEIGAIELHNHMPTGRTYHQYINPK-RSMPAGAFGIHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             +DKP F+ I   F DF    +A+ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLDPPQTPTAGQVILRDKPVFADIAQAFVDFIG--DAKLVIHNAAFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +N+  L   + +DTL IAR+K P S   L++LC+R+GI  S+R+ HGALLDS +L++VY+
Sbjct: 118 VNRPLLPMDQSLDTLGIARKKFPGSPASLDALCRRFGIDNSNRTLHGALLDSEILAEVYL 177

Query: 173 KMMVGGSQINF---GFKTNEDRFFKE-EKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
           + ++GG Q +    G  +++ +   E E +  P      R  PL  +I   E+  H   I
Sbjct: 178 E-LIGGRQPDLVMGGQTSSKSKTAAEGEWRAQP------RPTPLAPKIKAAEVGAHAAFI 230

Query: 229 QTLGKNAIWDR 239
           ++LG+ A+W++
Sbjct: 231 KSLGETALWNK 241


>gi|71907224|ref|YP_284811.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Dechloromonas aromatica RCB]
 gi|71846845|gb|AAZ46341.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Dechloromonas aromatica RCB]
          Length = 238

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/242 (39%), Positives = 138/242 (57%), Gaps = 24/242 (9%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD ++  RIIE+  +E+++   T      ++ P  R+    A  +HGI
Sbjct: 1   MRQIVLDTETTGLDPRSGHRIIEVACIEMVNRRFTGHHLHKYINPE-REIDEGAQAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ I  EF +F N   AE I HNA FD+GF+NAEL R+ + P+    + +
Sbjct: 60  TLEFLADKPKFADIADEFLEFIN--GAELIIHNAPFDIGFLNAELDRLGRVPVGTICNGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +A+  HP  RN L++LC+RY I  S R+ HGALLD+ LL+DV++ M  G + +  
Sbjct: 118 IDTLRMAKELHPGKRNSLDALCERYEIDNSSRTLHGALLDTELLADVFLAMTRGQNSL-- 175

Query: 184 GFKTNEDRFFKEEKKTVPNISL---LKRDKPL-FTRITKEELDEHDKTIQTLGKNA---- 235
                     + + +  PNI     ++  KPL   R   EE+ EH+  +  + K +    
Sbjct: 176 --------MIEPDAEPRPNIGADGQVRERKPLSVRRAAPEEIAEHETVLAAIDKESKGAC 227

Query: 236 IW 237
           IW
Sbjct: 228 IW 229


>gi|251792047|ref|YP_003006767.1| DNA polymerase III subunit epsilon [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533434|gb|ACS96680.1| DNA polymerase III, epsilon subunit [Aggregatibacter aphrophilus
           NJ8700]
          Length = 254

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/252 (38%), Positives = 150/252 (59%), Gaps = 22/252 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           I+ ++ R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R   
Sbjct: 3   IQTHQNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVD 61

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA+K+HGITDE L DKP FS I +EF ++   + AE + HNA FDVGF++ E +++N  
Sbjct: 62  PEAIKVHGITDEMLADKPDFSQIANEFIEYI--KGAELLIHNAPFDVGFMDYEFRKLNL- 118

Query: 117 PL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           P+   D   + DTL +AR+ +P  +N+L++LC R  I  S R+ HGALLD+ +L+DVY+ 
Sbjct: 119 PIKTNDICTVTDTLVMARQMYPGKKNNLDALCSRLDIDNSKRTLHGALLDAEILADVYLA 178

Query: 174 MMVGGSQINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           M  G + +   F  +E    ++      V +     R+  L T  T+EEL+ H + ++ +
Sbjct: 179 MTGGQTSL---FDESEQDVIQQAVTHHQVKSAVTFSRNLRLLTP-TEEELEAHLEYLKLI 234

Query: 232 GK----NAIWDR 239
            K    N +WDR
Sbjct: 235 NKKSKENCLWDR 246


>gi|261868455|ref|YP_003256377.1| DNA polymerase III subunit epsilon [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413787|gb|ACX83158.1| DNA polymerase III, epsilon subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 253

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/251 (37%), Positives = 150/251 (59%), Gaps = 21/251 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           I+ N  R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ PN R   
Sbjct: 3   IQINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPN-RPVD 61

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P+A+K+HGITDE L DKP FS + ++F ++   + AE + HNA FDVGF++ E  ++N  
Sbjct: 62  PDAIKVHGITDEMLADKPDFSQVANQFIEYI--KGAELLIHNAPFDVGFMDYEFAKLNL- 118

Query: 117 PL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           P+   D   + DTL++AR+ +P  +N+L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 119 PIKTNDICLVTDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDADILADVYLA 178

Query: 174 MMVGGSQINFGFKTNEDRFFKEE-KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           M  G + +   F  +E    +   ++ V +  +   +  L T  T+EEL  H + ++ + 
Sbjct: 179 MTGGQTSL---FDESEPEIIQHAGEQQVQSTVVFSHNLRLLTP-TEEELQAHLEYLKLIN 234

Query: 233 K----NAIWDR 239
           K    N +W+R
Sbjct: 235 KKSKDNCLWER 245


>gi|170697939|ref|ZP_02889022.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170137105|gb|EDT05350.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 244

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/240 (38%), Positives = 135/240 (56%), Gaps = 17/240 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  DR+IEIG VELL+   T     +++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL+DKP F+ +  +  DF   + AE I HNA FD+GF++AE  R++  P       +
Sbjct: 60  TTEFLRDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE------ELDEHDKTIQTLGKNAIW 237
                +D            +SL     P+      E      +LDE DK+++      +W
Sbjct: 176 VIDMLDDAGADGSAANGQRVSLASLVLPVLAASDDELAAHQTQLDELDKSVK---GTCVW 232


>gi|264678862|ref|YP_003278769.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2]
 gi|299532427|ref|ZP_07045819.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
 gi|262209375|gb|ACY33473.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2]
 gi|298719665|gb|EFI60630.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
          Length = 243

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/232 (39%), Positives = 133/232 (57%), Gaps = 11/232 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL +   DR+IE+G VEL++   T     ++    GR + P+AL++HGIT
Sbjct: 3   RQIVLDTETTGLSAIDGDRLIELGCVELVNRKLTGNNLHLYFNA-GRDSHPDALRVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124
            EFLKDKP F     E W++   Q AE I HNA FD+GF+N EL+   + PL      ++
Sbjct: 62  TEFLKDKPRFEEKIDEIWEYL--QGAELIIHNAPFDLGFLNNELKLAKRPPLKQCVGGVL 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +A+  +P  RN L+SLC R G+  S+R+ HGALLD+ LL+DVYI +  G   +   
Sbjct: 120 DTLVMAKEMYPGKRNSLDSLCDRLGVDNSNRTLHGALLDAELLADVYINLTRGQDAL--- 176

Query: 185 FKTNEDRFFKEEKK-TVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
             T E           VP++ L     P+  R  ++E   HD  ++ + K++
Sbjct: 177 LMTEEPADAPAAGAIVVPSVDLSSFKLPVL-RANEQEQQSHDDVLKQMDKSS 227


>gi|301021445|ref|ZP_07185469.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1]
 gi|300398081|gb|EFJ81619.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1]
          Length = 246

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/241 (37%), Positives = 137/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++ARR  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M   G 
Sbjct: 127 FCKVTDSLAVARRMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILADVYLAMT--GG 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+     +Q  G + +
Sbjct: 185 QTSMAFAMEGETQQQQGETTIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 W 237
           W
Sbjct: 244 W 244


>gi|293390398|ref|ZP_06634732.1| DNA polymerase III, epsilon subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950932|gb|EFE01051.1| DNA polymerase III, epsilon subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 253

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/251 (37%), Positives = 149/251 (59%), Gaps = 21/251 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           I+ N  R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ PN R   
Sbjct: 3   IQINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPN-RPVD 61

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P+A+K+HGITDE L DKP FS   +EF ++   + AE + HNA FDVGF++ E  ++N  
Sbjct: 62  PDAIKVHGITDEMLADKPDFSQAANEFIEYI--KGAELLIHNAPFDVGFMDYEFAKLNL- 118

Query: 117 PL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           P+   D   + DTL++AR+ +P  +N+L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 119 PIKTNDICLVTDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLA 178

Query: 174 MMVGGSQINFGFKTNEDRFFKEE-KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           M  G + +   F  +E    +   ++ V +  +   +  L T  T+EEL  H + ++ + 
Sbjct: 179 MTGGQTSL---FDESEPEIIQHAGEQQVQSAVVFSHNLRLLTP-TEEELQAHLEYLKLIN 234

Query: 233 K----NAIWDR 239
           K    N +W+R
Sbjct: 235 KKSRDNCLWER 245


>gi|78065897|ref|YP_368666.1| DNA polymerase III subunit epsilon [Burkholderia sp. 383]
 gi|77966642|gb|ABB08022.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
          Length = 244

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/240 (39%), Positives = 137/240 (57%), Gaps = 17/240 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL DKP F+ + ++  DF   Q+AE I HNA FD+GF++AE  R++  P       +
Sbjct: 60  TTEFLSDKPKFAEVANQIRDFV--QDAELIIHNAPFDLGFLDAEFARLDLPPFTKHCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE------ELDEHDKTIQTLGKNAIW 237
                +D            +SL   D P+      E      +LDE DK+++      +W
Sbjct: 176 VIDMLDDAGADGGAGNGQRVSLAALDLPVVAASDDELAAHQAQLDELDKSVK---GTCVW 232


>gi|90407281|ref|ZP_01215467.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3]
 gi|90311564|gb|EAS39663.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3]
          Length = 236

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/184 (45%), Positives = 121/184 (65%), Gaps = 11/184 (5%)

Query: 8   RKIVFDIETTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R++V D ETTG++         RIIEIG VE+++   T R + V+L P+ R+  PEA+ +
Sbjct: 8   RQVVLDTETTGMNKDGTIYLGHRIIEIGCVEVINRRLTGRHYHVYLQPD-REVDPEAVTV 66

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--DPLDP 120
           HGITDEFL+DKP F+ I  +F DF   + A+ + HNA FDVGF++ E + +NK   P + 
Sbjct: 67  HGITDEFLQDKPHFADIADDFIDFI--RGADLVIHNAPFDVGFMDQEFRFLNKKTQPTEE 124

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            + + DTL +A++  P  RN+L+ LC RYGI   HR+ HGALLD+ +L+DVY+ M  G S
Sbjct: 125 IATVTDTLVMAKKMFPGKRNNLDILCDRYGINTKHRTLHGALLDAEILADVYLLMSGGQS 184

Query: 180 QINF 183
           ++N 
Sbjct: 185 KLNL 188


>gi|148979853|ref|ZP_01815731.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
 gi|145961545|gb|EDK26846.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
          Length = 255

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/187 (44%), Positives = 120/187 (64%), Gaps = 16/187 (8%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++++        RI+EIGAVE+++   T R F V++ P+ R    EA+ 
Sbjct: 22  RIVVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYIKPD-RAIQEEAIG 80

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118
           +HGITDEFL DKP +  I  EF DF   + AE +AHNA FD GF++ E +++  DP    
Sbjct: 81  VHGITDEFLVDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKL--DPTIGK 136

Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             D  ++ DTL +A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  
Sbjct: 137 TDDYCKVTDTLDMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTG 196

Query: 177 GGSQINF 183
           G + + F
Sbjct: 197 GQTSLQF 203


>gi|309750446|gb|ADO80430.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2866]
          Length = 256

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/260 (38%), Positives = 146/260 (56%), Gaps = 29/260 (11%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R   P+A
Sbjct: 3   NPNRQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           +K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N +   
Sbjct: 62  IKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ MM G
Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178

Query: 178 GSQINF---------GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
           G    F           +  +++  +E K  V     LK  +P     T +EL  H + +
Sbjct: 179 GQTNLFDEEESVESEVIRVVQEKAAEEIKSAVDFSHNLKLLQP-----TNDELQAHLELL 233

Query: 229 QTL----GKNAIWDRYISSN 244
           + L    G N +WD+   +N
Sbjct: 234 KMLNKKSGNNCLWDKRFGNN 253


>gi|261253702|ref|ZP_05946275.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
 gi|260937093|gb|EEX93082.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
          Length = 223

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/220 (40%), Positives = 131/220 (59%), Gaps = 17/220 (7%)

Query: 25  RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFW 84
           RIIEIGAVE+++   T R F V++ P+ R    EA+++HGITDEFL DKP +  + +EF 
Sbjct: 13  RIIEIGAVEIINRKLTGRHFHVYIKPD-RDIQSEAVEVHGITDEFLVDKPEYQDVHAEFL 71

Query: 85  DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPSRIIDTLSIARRKHPSSRN 139
           DF   + AE +AHNA FD GF++ E   +  DP      D  ++ DTL++A++  P  RN
Sbjct: 72  DFI--KGAELVAHNAPFDTGFMDYEFGML--DPTIGKTDDYCKVTDTLAMAKKIFPGKRN 127

Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT 199
           +L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G + + F   ++ D   +  K+ 
Sbjct: 128 NLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLQFNAGSSNDDGGEAIKRA 187

Query: 200 VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--IW 237
                 LK       R T +E+D H+K +  + KN   +W
Sbjct: 188 ASGRKALK-----VLRATADEIDAHNKRLDIVEKNGSCLW 222


>gi|332528386|ref|ZP_08404380.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC
           19624]
 gi|332042149|gb|EGI78481.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC
           19624]
          Length = 252

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/238 (38%), Positives = 133/238 (55%), Gaps = 15/238 (6%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL ++  DRIIE+G VELL+   +      +  P GR +  +AL++HGI
Sbjct: 1   MRQIVLDTETTGLSAEGGDRIIELGCVELLNRKLSGNNLHFYFNP-GRDSHEDALRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           ++EFL+DKP F+ +  E   +   Q AE I HNA FDVGF+N EL+ I K  L      I
Sbjct: 60  SNEFLRDKPKFAEVAQEILAYL--QGAELIIHNAAFDVGFLNKELELIGKPALHTFVGGI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL++A+  +P  RN L++LC R G+  S R+ HGALLD+ LL+DVYI M  G   +  
Sbjct: 118 TDTLAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINMTRGQDAL-- 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI----QTLGKNAIW 237
               +     ++       I L + D P+    +++EL  H   +    +  G   +W
Sbjct: 176 --LIDAGDAVEQAGAGFERIDLSRFDLPVL-HASEQELAAHGDVLAQIDKACGGKTVW 230


>gi|221134302|ref|ZP_03560607.1| DNA polymerase III, epsilon subunit [Glaciecola sp. HTCC2999]
          Length = 240

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/230 (40%), Positives = 127/230 (55%), Gaps = 19/230 (8%)

Query: 7   MRKIVFDIETTGLD-------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MR+IV D ETTG+        +   RIIEIG VEL+D   T   + V++ P  +   PEA
Sbjct: 1   MRQIVLDTETTGMSRESGEHFTHGHRIIEIGCVELVDRKLTGNHYHVYINPQ-QDIDPEA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +HGIT+EFL+DKP F  I   F DF +   AE + HNA FDVGF++ E        L 
Sbjct: 60  IAVHGITNEFLEDKPLFKEIAQGFIDFID--GAELVIHNAPFDVGFMDLEFALNPATALT 117

Query: 120 PSR----IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +     ++DTL +A++  P  RN+L++LC+ YGI  SHR  HGALLD+ +L+DVY+ M 
Sbjct: 118 RTEKFCTVLDTLVLAKKMRPGQRNNLDALCREYGIDNSHRDLHGALLDAEILADVYLLMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            G   ++    T     F   +K  P  S LK         T +EL EH+
Sbjct: 178 GGQETLSLETGTKSSSGFDNVEKLAPRTSALK-----IIHATADELTEHE 222


>gi|148825595|ref|YP_001290348.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE]
 gi|229847255|ref|ZP_04467358.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1]
 gi|148715755|gb|ABQ97965.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE]
 gi|229809798|gb|EEP45521.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1]
          Length = 256

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/260 (38%), Positives = 147/260 (56%), Gaps = 29/260 (11%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R   P+A
Sbjct: 3   NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           +K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N +   
Sbjct: 62  IKVHGITDEMLADKPEFKDLAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ MM G
Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178

Query: 178 GSQINFG---------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
           G    F           +  +++  +E K  V     LK  +P     T +EL  H + +
Sbjct: 179 GQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLELL 233

Query: 229 QTL----GKNAIWDRYISSN 244
           + L    G N +WD+   +N
Sbjct: 234 KMLNKKSGNNCLWDKRFGNN 253


>gi|145637904|ref|ZP_01793548.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH]
 gi|145268904|gb|EDK08863.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH]
          Length = 256

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/260 (38%), Positives = 146/260 (56%), Gaps = 29/260 (11%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R   P+A
Sbjct: 3   NPNRQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           +K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N +   
Sbjct: 62  IKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ MM G
Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178

Query: 178 GSQINF---------GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
           G    F           +  +++  +E K  V     LK  +P     T +EL  H + +
Sbjct: 179 GQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLELL 233

Query: 229 QTL----GKNAIWDRYISSN 244
           + L    G N +WD+   +N
Sbjct: 234 KMLNKKSGNNCLWDKRFGNN 253


>gi|167648966|ref|YP_001686629.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31]
 gi|167351396|gb|ABZ74131.1| DNA polymerase III, epsilon subunit [Caulobacter sp. K31]
          Length = 238

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/235 (38%), Positives = 135/235 (57%), Gaps = 9/235 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTG D K  DR++EIG +E++D+  T R+F  + C   R    EA K+HG++
Sbjct: 3   REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEY-CDPLRDMPAEAQKVHGLS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            EFL  KP F  I   F +F  +     IAHNA FD  F+N EL++ N+ PL  SR +DT
Sbjct: 62  IEFLTGKPKFHEIADAFLEFVGDSPV--IAHNAAFDRSFVNFELEKCNRGPLPESRWVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LCKR+ I++  R KHGAL+D+HLL++VY+++  GG +      
Sbjct: 120 LAMAKKRFPGMYNSLDALCKRFKISLDSRDKHGALIDAHLLAEVYLELQ-GGKERALELT 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-AIWDRY 240
                            S   R +PL  R T+EE   H   +Q   K+ A+W ++
Sbjct: 179 QVVA---VNAVSAARAGSYGARPRPLPPRSTEEERQLHAAFVQKNFKDKAVWIQF 230


>gi|239815139|ref|YP_002944049.1| DNA polymerase III, subunit epsilon [Variovorax paradoxus S110]
 gi|239801716|gb|ACS18783.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus S110]
          Length = 235

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/231 (38%), Positives = 138/231 (59%), Gaps = 11/231 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++N DRIIE+G VEL     T     ++  P  R++  +ALK+HG+T
Sbjct: 3   RQIVLDTETTGLSAENGDRIIELGCVELFARKLTGNDLHIYFNPE-RESHEDALKVHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124
            +FL+DKP F+++ ++  ++   + AE I HNA FDVGF+N EL+     PL      + 
Sbjct: 62  TDFLRDKPKFATLANDIVEYL--RGAELIIHNAAFDVGFLNKELELAGLPPLRSFVGEVT 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++A++ +P  RN L++LC R+G+  S+R+ HGA LD+ LL+DVYI +  G   +   
Sbjct: 120 DTLAMAKQVYPGKRNSLDALCDRFGVDRSNRTFHGAKLDAQLLADVYINLTRGQDALLID 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
             +NE      +  TV  I L + D P+     ++EL  H+  +  L K++
Sbjct: 180 VASNE----PAQGTTVVAIDLSQFDLPVIM-AAEQELAAHEAVLSQLDKSS 225


>gi|92114064|ref|YP_573992.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens
           DSM 3043]
 gi|91797154|gb|ABE59293.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens
           DSM 3043]
          Length = 253

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/255 (37%), Positives = 145/255 (56%), Gaps = 21/255 (8%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D K+  R+IEIGAVE+++   T   +  ++ P  R   PEA+++HGI
Sbjct: 1   MRQIVLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPE-RDIDPEAVEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-------DPL 118
           T+E + D+P F+ I   FW++   + AE + HNA FDVGFI+ E   ++         P+
Sbjct: 60  TNERVADEPVFADIADAFWEYI--RGAELVIHNAAFDVGFIDHEFGLLHDKRGGPRLGPV 117

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   ++DTL++AR+ HP  RN+L++LCKRYGI    R  HGALLD+ +LSDVY+ M   
Sbjct: 118 ADYCSVLDTLAMARKLHPGQRNNLDALCKRYGIDNGRRVLHGALLDAEILSDVYLTMT-- 175

Query: 178 GSQINFGFKTNEDRFFKE--EKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQTLGK 233
           G Q        E+R   E  +  +V  I  + R+      TR ++ E   H   + ++ +
Sbjct: 176 GGQTALSLAGIEERAGDEGQDANSVSGIRRVSREGLSLAVTRPSEAEEAAHRAKLDSIRQ 235

Query: 234 NAI---WDRYISSNQ 245
            A    WD    ++Q
Sbjct: 236 AAGQCHWDALNDASQ 250


>gi|260775260|ref|ZP_05884157.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608441|gb|EEX34606.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 246

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/246 (37%), Positives = 138/246 (56%), Gaps = 22/246 (8%)

Query: 5   NKMRKIVFDIETTGLDS------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           N  R +V D ETTG++       +  RIIEIGAVE+++   T R F V++ P+ R+  P+
Sbjct: 8   NHNRIVVLDTETTGMNREGGPHYQGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPD 66

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A+++HGITDEFL DKP +  +  EF +F   + AE +AHNA FD GF++ E   +  DP 
Sbjct: 67  AVEVHGITDEFLVDKPEYQDVHKEFLEFI--KGAELVAHNAPFDTGFMDYEFNML--DPG 122

Query: 119 -----DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 123 IGKTDDYCKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLL 182

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           M  G + + F     +     E  K         R      R T +EL+ H   +  + K
Sbjct: 183 MTGGQTSLQFNSGNADGNVGGESIKRAAG----GRKSLKVIRATADELEAHQNRLDLVEK 238

Query: 234 NA--IW 237
           +   +W
Sbjct: 239 SGSCLW 244


>gi|57239226|ref|YP_180362.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161305|emb|CAH58228.1| DNA polymerase III, epsilon subunit [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 242

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 141/239 (58%), Gaps = 9/239 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   N +R+IV D ETTGLD+   DRIIE+G +EL+D   T + F  ++ P  R     A
Sbjct: 1   MSYYNGIREIVLDTETTGLDADGGDRIIEMGCIELIDRVFTGKVFHEYINPE-RDIPYYA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGIT + LKDKP FS I  +F DF    N+  + HNA FD+ FI  EL +I K    
Sbjct: 60  TKIHGITVDMLKDKPKFSEIADKFLDFIG--NSVLVIHNAVFDIKFIKMELDKIQKSYNS 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +++DTL +AR+K P   + L++LCKR+ I++  R  HGALLD+ LL  VY+++M GG 
Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCKRFNISLQDRKFHGALLDATLLGKVYVQLM-GGL 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           Q +  F+ N   F   +     + S +   +P   ++++EE+ +H   ++ + KN IW+
Sbjct: 177 QRSLNFQDNSSMFQSSDYSHDVSRSYI---EPRLYKVSEEEIVKHKMLLEKI-KNPIWN 231


>gi|332525346|ref|ZP_08401511.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
 gi|332108620|gb|EGJ09844.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
          Length = 234

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 119/174 (68%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL + + DR++E+G +E+L+   + RT   +L P  R ++PEA+K+HG+
Sbjct: 1   MRQIFLDTETTGLSAVDGDRLVEVGCIEMLNRRLSGRTLHHYLNPE-RSSNPEAVKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           TDEFL DKP F+++  EF +F   ++AE I HNA FDVGF++AEL R+ K  L      I
Sbjct: 60  TDEFLADKPLFAAVADEFIEFV--RDAELIIHNAAFDVGFLDAELTRLGKPRLVELGCTI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D+L +AR+  P   N L++LCKR  +  S+R+ HGALLD+ LL++VYI+M  G
Sbjct: 118 TDSLVMARQLFPGKANSLDALCKRLEVDNSNRALHGALLDAGLLAEVYIRMTRG 171


>gi|260581298|ref|ZP_05849115.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW]
 gi|260092047|gb|EEW75993.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW]
          Length = 256

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/260 (37%), Positives = 147/260 (56%), Gaps = 29/260 (11%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R   P+A
Sbjct: 3   NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           +K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N +   
Sbjct: 62  IKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ MM G
Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178

Query: 178 GSQINFG---------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
           G    F           +  +++  +E K  V     LK  +P     T +EL  H + +
Sbjct: 179 GQTNLFDEEESVESGVIRVMQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLEFL 233

Query: 229 QTL----GKNAIWDRYISSN 244
           + +    G N +WD+   +N
Sbjct: 234 KMMNKKSGNNCLWDKRFGNN 253


>gi|325527245|gb|EGD04625.1| DNA polymerase III subunit epsilon [Burkholderia sp. TJI49]
          Length = 243

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/240 (38%), Positives = 134/240 (55%), Gaps = 17/240 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  DR+IEIG VELL+   T     +++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ +  +  DF   + AE I HNA FD+GF++AE  R+   P       +
Sbjct: 60  TTEFLSDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE------ELDEHDKTIQTLGKNAIW 237
                +D            +SL   D P+      E      +LDE DK+++      +W
Sbjct: 176 VIDMLDDEAADGGAGGGQRVSLASLDLPVLAASDDELAAHQTQLDELDKSVK---GTCVW 232


>gi|295677150|ref|YP_003605674.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
 gi|295436993|gb|ADG16163.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
          Length = 244

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 79/174 (45%), Positives = 114/174 (65%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRI+E+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARGGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ I  +F DF   Q A+ I HNA FD+GF++AE   +   P+      I
Sbjct: 60  TTEFLSDKPKFAEIIDQFRDFI--QGADLIIHNAPFDIGFLDAEFALLGLPPVSTHCGEI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G
Sbjct: 118 IDTLAQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171


>gi|145633563|ref|ZP_01789291.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655]
 gi|144985769|gb|EDJ92383.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655]
          Length = 256

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/260 (38%), Positives = 146/260 (56%), Gaps = 29/260 (11%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R   P+A
Sbjct: 3   NPNRQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           +K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N +   
Sbjct: 62  IKVHGITDEMLADKPEFKDLAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ MM G
Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178

Query: 178 GSQINFG---------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
           G    F           +  +++  +E K  V     LK  +P     T +EL  H + +
Sbjct: 179 GQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLELL 233

Query: 229 QTL----GKNAIWDRYISSN 244
           + L    G N +WD+   +N
Sbjct: 234 KMLNKKSGNNCLWDKRFGNN 253


>gi|226945027|ref|YP_002800100.1| DNA polymerase III subunit epsilon [Azotobacter vinelandii DJ]
 gi|226719954|gb|ACO79125.1| DNA polymerase III, epsilon subunit [Azotobacter vinelandii DJ]
          Length = 244

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/234 (38%), Positives = 137/234 (58%), Gaps = 10/234 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+  ++  RIIEIG VEL     T R F V+L P+ R     A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTEGHRIIEIGCVELQGRRLTGRHFHVYLQPD-RTVDEGAVAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121
           TD+FL DKP F+ I  EF++F   + A+ I HNA FD+GFI  E  R+ +    D     
Sbjct: 60  TDDFLADKPRFADIAEEFFEFI--KGAQLIIHNAAFDIGFIEDEFSRLGQTERADVNAHC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR +HP  RN L++LCKRY +  S+R  HGALLD+ +L+DV++ M  G + +
Sbjct: 118 TVLDTLLMARERHPGQRNSLDALCKRYDVDNSNRDLHGALLDAEILADVWLAMTGGQTHL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           +   + +E+   + +   +  +S  +R +    R  ++EL  H + +  + K A
Sbjct: 178 SLSGEGSEN-GGRAQASAIRRLS-PERQRTRVIRAGEQELAAHAERLAAIEKAA 229


>gi|84501202|ref|ZP_00999407.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola batsensis HTCC2597]
 gi|84390493|gb|EAQ02981.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola batsensis HTCC2597]
          Length = 230

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/235 (40%), Positives = 142/235 (60%), Gaps = 8/235 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D  + DRI+EIGAVEL ++  T  T+ V++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPEQGDRIVEIGAVELWNHVPTGETYHVYINPE-RSMPQEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F  +   F +F   ++A+ + HNA FD+ FINAEL  +N   +   + ID
Sbjct: 60  GDDFLRDKPVFRDVARGFVEFV--KDAKLVIHNASFDMKFINAELGWLNIPAIPWDQAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR++ P S   L++LC+R+GI  S R+ HGALLDS +L++VY++ ++GG Q +F  
Sbjct: 118 TLAIARQRFPGSPASLDALCRRFGIDNSARTLHGALLDSEILAEVYLE-LIGGRQPDFAL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             +      +      +     R  PL  RIT EE   H + ++ LG  A+W  Y
Sbjct: 177 SASTG---TQTGTDTADWRPKPRPTPLPPRITAEEAAAHAEFVERLGDGALWKSY 228


>gi|186475632|ref|YP_001857102.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815]
 gi|184192091|gb|ACC70056.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815]
          Length = 249

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/240 (38%), Positives = 135/240 (56%), Gaps = 18/240 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRIIEIGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ I     DF   Q+AE I HNA FD+GF++AE   +   P       +
Sbjct: 60  TTEFLSDKPKFAEIADTLRDFI--QDAELIIHNAPFDIGFLDAEFALLGLPPFSQYCGEV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--I 181
           IDTL  A+   P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G     I
Sbjct: 118 IDTLVRAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
           +   +T  D     ++  +  + L      +    T +EL EH+  +  L K+    ++W
Sbjct: 178 DMLGETAADDAGGAKRVMLDTLEL------IVLAATDDELAEHEALLDGLDKSLKGTSVW 231


>gi|291616383|ref|YP_003519125.1| DnaQ [Pantoea ananatis LMG 20103]
 gi|291151413|gb|ADD75997.1| DnaQ [Pantoea ananatis LMG 20103]
          Length = 243

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/241 (37%), Positives = 142/241 (58%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIG VE+++   T   F ++L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNMIGVHYEGHRIIEIGGVEVINRRLTGNNFHMYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLD 119
           HGI DEFL DKP+FS I  EF D+   + AE + HNA FD+GF++ E   LQR  +    
Sbjct: 66  HGIADEFLLDKPTFSDIADEFLDYI--RGAELVIHNASFDIGFMDYEFGKLQRGIEKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++ARR  P  RN L++LC RY I  S R+ HGALLD+ +L++V++ M   G 
Sbjct: 124 FCKITDSLAMARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAEILAEVFLTMT--GG 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
           Q +  F + E+R  +++ + +  I+       + T  + EE+++H+  +  +   G + +
Sbjct: 182 QTSLSFSSEEERARQQQSEGIQRIARPSSGLRVVT-ASDEEVNQHESRLDLIMKKGGSCL 240

Query: 237 W 237
           W
Sbjct: 241 W 241


>gi|167587486|ref|ZP_02379874.1| DNA polymerase III subunit epsilon [Burkholderia ubonensis Bu]
          Length = 242

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/245 (37%), Positives = 138/245 (56%), Gaps = 13/245 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ +  +  DF   + AE I HNA FD+GF++AE  R++  P     + +
Sbjct: 60  TTEFLSDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                +D            +SL   D P+    + +EL  H   +  L K+     +W R
Sbjct: 176 VIDMLDDDAADGGAANGQRVSLASLDLPVLA-ASDDELAAHQAQLDGLDKSVKGTCVWRR 234

Query: 240 YISSN 244
             ++ 
Sbjct: 235 TPAAG 239


>gi|319898105|ref|YP_004136302.1| DNA polymerase iii epsilon subunit [Haemophilus influenzae F3031]
 gi|317433611|emb|CBY81995.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3031]
          Length = 256

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/260 (37%), Positives = 147/260 (56%), Gaps = 29/260 (11%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R   P+A
Sbjct: 3   NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           +K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N +   
Sbjct: 62  IKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ MM G
Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178

Query: 178 GSQINF---------GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
           G    F           +  +++  +E K  V     LK  +P     T +EL  H + +
Sbjct: 179 GQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQP-----TNDELQAHLEFL 233

Query: 229 QTL----GKNAIWDRYISSN 244
           + +    G N +WD+   +N
Sbjct: 234 KMMNKKSGNNCLWDKRFGNN 253


>gi|327392834|dbj|BAK10256.1| DNA polymerase III epsilon subunit DnaQ [Pantoea ananatis AJ13355]
          Length = 243

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/241 (38%), Positives = 142/241 (58%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T   F ++L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLD 119
           HGI DEFL DKP+FS I  EF D+   + AE + HNA FD+GF++ E   LQR  +    
Sbjct: 66  HGIADEFLLDKPTFSDIADEFLDYI--RGAELVIHNASFDIGFMDYEFGKLQRGIEKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++ARR  P  RN L++LC RY I  S R+ HGALLD+ +L++V + M   G 
Sbjct: 124 FCKITDSLAMARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAEILAEVLLTMT--GG 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
           Q +  F + E+R  +++ + +  I+       + T  + EE+++H+  +  +   G + +
Sbjct: 182 QTSLSFSSEEERARQQQSEGIQRIARPNSGLRVVT-ASDEEVNQHESRLDLIMKKGGSCL 240

Query: 237 W 237
           W
Sbjct: 241 W 241


>gi|309972740|gb|ADO95941.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2846]
          Length = 255

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 99/259 (38%), Positives = 148/259 (57%), Gaps = 28/259 (10%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R   P+A
Sbjct: 3   NPNRQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           +K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N +   
Sbjct: 62  IKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ MM G
Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178

Query: 178 GSQINFGFKTNEDRFFK-------EEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQ 229
           G    F  ++ E    +       EE K+  + S  LK  +P     T +EL  H + ++
Sbjct: 179 GQTNLFDEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQP-----TNDELQAHLEFLK 233

Query: 230 TL----GKNAIWDRYISSN 244
            +    G N +W++   +N
Sbjct: 234 MMNKKSGNNCLWEKRFGNN 252


>gi|89067418|ref|ZP_01154931.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola granulosus HTCC2516]
 gi|89046987|gb|EAR53041.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola granulosus HTCC2516]
          Length = 230

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/184 (45%), Positives = 121/184 (65%), Gaps = 5/184 (2%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D ++ DRI+EIGAVEL ++  T RT+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPEDGDRIVEIGAVELDNHMPTGRTYHQYINPQ-RAMPREAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL DKP F+ I   F DF    +A  + HNA FD+ F+NAEL   N   L  S+ +D
Sbjct: 60  GDEFLADKPVFARIGRAFLDFVG--DARLVIHNASFDMKFLNAELGWANLPRLPDSQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+++AR K P S   L++LC+R+GI  S R+ HGALLDS +L++VY++ ++GG Q +F  
Sbjct: 118 TVAMARSKFPGSPVSLDALCRRFGIDNSARTYHGALLDSEILAEVYLE-LIGGRQPDFAL 176

Query: 186 KTNE 189
             ++
Sbjct: 177 SVSQ 180


>gi|26990834|ref|NP_746259.1| DNA polymerase III subunit epsilon [Pseudomonas putida KT2440]
 gi|24985842|gb|AAN69723.1|AE016608_9 DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440]
          Length = 252

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 96/243 (39%), Positives = 135/243 (55%), Gaps = 14/243 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+   +  RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPL 118
           + +HGITD FL  KP F  +  EF+ F   Q A  + HNA FDVGFIN E   + + D  
Sbjct: 60  INVHGITDAFLVGKPRFGDVAEEFFQFI--QGATLVIHNAAFDVGFINNEFALLGQQDRA 117

Query: 119 DPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D S+   I+DTL +AR +HP  RN L++LCKRY I  S R  HGALLDS LL+DVY+ M 
Sbjct: 118 DISQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177

Query: 176 VGGSQINF---GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            G + ++    G  T ED    +         ++ R        + EEL+ H + +  + 
Sbjct: 178 GGQTSLSLAGNGADTEED---GQGAGGSEIRRIVGRAPGRVIMASAEELEAHAERLAAIA 234

Query: 233 KNA 235
           K+A
Sbjct: 235 KSA 237


>gi|58617240|ref|YP_196439.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Gardel]
 gi|58416852|emb|CAI27965.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Gardel]
          Length = 242

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 141/239 (58%), Gaps = 9/239 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   N +R+IV D ETTGLD+   DRIIE+G +EL+D   T + F  ++ P  R     A
Sbjct: 1   MSYYNGIREIVLDTETTGLDADGGDRIIEMGCIELIDRVFTGKVFHEYINPE-RDIPYYA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGIT + LKDKP FS I  +F DF    N+  + HNA FD+ FI  EL +I K    
Sbjct: 60  TKIHGITVDMLKDKPKFSEIADKFLDFIG--NSVLVIHNAVFDIKFIKMELDKIQKSYNS 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +++DTL +AR+K P   + L++LCKR+ I++  R  HGALLD+ LL  VY+++M GG 
Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCKRFNISLQDRKFHGALLDATLLGKVYVQLM-GGL 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           Q +  F+ N   F   +     + S +   +P   ++++EE+ +H   ++ + KN IW+
Sbjct: 177 QRSLNFQDNSGMFQSSDYSHDVSRSYI---EPRLYKVSEEEIVKHRMLLEKI-KNPIWN 231


>gi|171318244|ref|ZP_02907407.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171096588|gb|EDT41482.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 244

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 93/240 (38%), Positives = 136/240 (56%), Gaps = 17/240 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  DR+IEIG VELL+   T     +++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ +  +  DF   ++AE I HNA FD+GF++AE  R++  P       +
Sbjct: 60  TTEFLSDKPKFAEVVDQIRDFV--KDAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE------ELDEHDKTIQTLGKNAIW 237
                +D            +SL   D P+      E      +LDE DK+++      +W
Sbjct: 176 VIDMLDDAGADGGAANGQRVSLASLDLPVLAASDDELAAHQTQLDELDKSVK---GTCVW 232


>gi|145639808|ref|ZP_01795410.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII]
 gi|145271176|gb|EDK11091.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII]
          Length = 256

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/260 (37%), Positives = 146/260 (56%), Gaps = 29/260 (11%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R   P+A
Sbjct: 3   NPNRQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           +K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N +   
Sbjct: 62  IKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ MM G
Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178

Query: 178 GSQINFG---------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
           G    F           +  +++  +E K  V     LK  +P     T +EL  H + +
Sbjct: 179 GQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLELL 233

Query: 229 QTL----GKNAIWDRYISSN 244
           + +    G N +WD+   +N
Sbjct: 234 KMMNKKSGNNCLWDKRFGNN 253


>gi|329114274|ref|ZP_08243036.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001]
 gi|326696350|gb|EGE48029.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001]
          Length = 224

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 95/233 (40%), Positives = 131/233 (56%), Gaps = 12/233 (5%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I+FD ETTGLD +  DR+IEI A+EL+    T RTF   + P  R    EA ++HG T
Sbjct: 3   RSILFDTETTGLDPATGDRVIEIAALELVGDLPTGRTFHKLIDPE-RDVPEEASRVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+ KP F+ +  +F  F  +     IAHNA+FD GF+NAEL+R  K  L   R++DT
Sbjct: 62  RADLEGKPKFAEVADDFLAFVGDD--PLIAHNARFDFGFMNAELKRAGKKTLGLDRMVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +AR + P   N L++LC+R+G+ +S R+ H ALLD  LL+DVY+++M GG Q   G  
Sbjct: 120 LDMARERFPGMPNSLDALCRRFGVDLSARTTHNALLDCKLLADVYVELM-GGRQHGLGLM 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             ED          P    + R +P     T +EL  H   +  L K  IW+R
Sbjct: 179 A-EDGQLPSVMYEGPVNRKVVRVQP-----TPQELAAHAAFVAGL-KEPIWER 224


>gi|329891169|ref|ZP_08269512.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC
           11568]
 gi|328846470|gb|EGF96034.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC
           11568]
          Length = 241

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 89/235 (37%), Positives = 137/235 (58%), Gaps = 10/235 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG D K  DR+IE+G +E+ D   T RTF  F+ P  R   P+A+K+HGIT
Sbjct: 3   REIVLDTETTGFDPKTGDRLIEVGCIEIEDLLPTGRTFHRFINPE-RLIPPDAIKVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +KD P F  +  +  +F    +A  IAHNA FD  FI+ E+ RI + P    R IDT
Sbjct: 62  DDKVKDAPKFHEVVDDLMEFLG--DAPLIAHNANFDRNFIDFEIGRIGRTPPPQDRWIDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LCKRY I++  R+ HGAL+D+ LL++VY+++  GG +      
Sbjct: 120 LALAQKRFPGMANSLDALCKRYKISLVERTLHGALIDARLLAEVYLELR-GGKERALDLT 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-AIWDRY 240
           +          +T   ++   R +PL + +T EE   H   ++   K+ ++W  Y
Sbjct: 179 STR----GGAAETAERVAYGARPRPLPSFVTAEEEAAHLAFLKATIKDFSLWAGY 229


>gi|222110838|ref|YP_002553102.1| DNA polymerase iii subunit epsilon [Acidovorax ebreus TPSY]
 gi|221730282|gb|ACM33102.1| DNA polymerase III, epsilon subunit [Acidovorax ebreus TPSY]
          Length = 237

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/237 (38%), Positives = 135/237 (56%), Gaps = 15/237 (6%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++  DRIIE+G VEL++   T     ++L P  R +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSAEGGDRIIELGCVELVNRKLTGNNLHLYLNPE-RDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124
           +EFL+DKP F+    +   +   Q AE I HNA FDVGF++ EL+ +   PL      +I
Sbjct: 62  NEFLRDKPKFAERVQDILQYL--QGAELIIHNASFDVGFLDKELELVGLAPLSAHVGGVI 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++A+   P  RN L+SLC R G+  S R+ HGALLD+ LL+DVYI M  G   +   
Sbjct: 120 DTLAMAKEMFPGKRNSLDSLCDRLGVDNSSRTLHGALLDAELLADVYINMTRGQDALLI- 178

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI----QTLGKNAIW 237
               ++        TV  + L +    + T  + +EL EH++ +    ++ G   IW
Sbjct: 179 ---MDEATAGAGGTTVAAVDLSRIALTVLTA-SAQELAEHEEVLVQIDKSSGGKTIW 231


>gi|172060228|ref|YP_001807880.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6]
 gi|171992745|gb|ACB63664.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 244

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 80/174 (45%), Positives = 113/174 (64%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  DR+IEIG VELL+   T     +++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ +  +  DF   + AE I HNA FD+GF++AE  R++  P       +
Sbjct: 60  TTEFLSDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171


>gi|315179370|gb|ADT86284.1| DNA polymerase III, epsilon subunit [Vibrio furnissii NCTC 11218]
          Length = 234

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 93/241 (38%), Positives = 137/241 (56%), Gaps = 22/241 (9%)

Query: 10  IVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R    EA+++H
Sbjct: 1   MVLDTETTGMNLEGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RAIQDEAIEVH 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-----KDPL 118
           GITDEFL DKP +  +  EF DF   + AE +AHNA FDVGF++ E  +++      D L
Sbjct: 60  GITDEFLVDKPEYKDVHEEFLDFI--RGAELVAHNAPFDVGFMDYEFSKLSIPTAKTDEL 117

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 118 --CKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 175

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--I 236
           + + F   + E+       K V       R      R T +E+  H   +  + K+   +
Sbjct: 176 TSLQFSGSSQENGMGAGAIKRVAE----GRKALKVLRATADEIQAHQDRLDIVEKSGTCL 231

Query: 237 W 237
           W
Sbjct: 232 W 232


>gi|268592015|ref|ZP_06126236.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131]
 gi|291312407|gb|EFE52860.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131]
          Length = 247

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/246 (38%), Positives = 148/246 (60%), Gaps = 26/246 (10%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P+ R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI+DEFL+DKP F+ I  EF +F   + AE + HNA FD+GF++ E +++NK  + P++
Sbjct: 66  HGISDEFLQDKPVFAEIADEFLEFI--RGAELVIHNAPFDIGFMDYEFRKLNKG-IPPTQ 122

Query: 123 ----IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               I D+L +AR+  P  RN+L++LC RY I  S R+ HGALLD+ +LSDVY+ M  G 
Sbjct: 123 DFCTITDSLVLARKLFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQ 182

Query: 179 SQINFGFKT---NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---- 231
           + ++F   +   N ++ ++ ++   P   L    + +F   + EEL  H+  +  +    
Sbjct: 183 TSLSFSMDSESANNEQEYEIQRIERPQTGL----RVIFA--SDEELIAHEARLDIVDKKG 236

Query: 232 GKNAIW 237
           GK  +W
Sbjct: 237 GKPCLW 242


>gi|83313644|ref|YP_423908.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
 gi|82948485|dbj|BAE53349.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
          Length = 257

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 90/234 (38%), Positives = 135/234 (57%), Gaps = 6/234 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D     R++EIG VEL ++  T   F  +  P  R    EA K+HG+
Sbjct: 28  MREIVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGSVFHRYCNPE-RDMPEEAFKVHGL 86

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL DKP F+ I ++F +F    +   + HNA+FD+ FINAEL R+   PL  SR ID
Sbjct: 87  SADFLSDKPLFAEIVADFLEFIG--DVPLVIHNAEFDMRFINAELTRLGFPPLPMSRSID 144

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +AR++ P ++ +L++LC+R+ I  +HR+KHGALLDS LL++VY++ ++GG Q     
Sbjct: 145 TVMMARKRFPGAQANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQ-LIGGRQPGLEL 203

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
              +            +    +  +P     T+EE   H   +  L KNA+W R
Sbjct: 204 GGGKGNGAGGTANASTHQVTREFREPRPHGPTEEETAAHTAFVAKL-KNAVWLR 256


>gi|332535809|ref|ZP_08411542.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332034787|gb|EGI71325.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 237

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 95/239 (39%), Positives = 142/239 (59%), Gaps = 17/239 (7%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG+D K   RIIEIG VEL++   T   F V++ P  R +  EA+ +HGIT
Sbjct: 4   RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQ-RPSEEEAIDVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS--RI 123
           +EFL+DKP F  I  EF+D+   + AE + HNA FDVG ++ E   +N+  P   +  ++
Sbjct: 63  NEFLRDKPLFHQIAQEFFDYI--EGAELVIHNAPFDVGHMDNEFALLNQGYPKTETFCQV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR  HP  +N+L++LC+RY +  + R+ HGALLDS +L+DVY+ M  G +++N 
Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDVDNAKRTLHGALLDSEILADVYLAMTGGQTKLN- 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDK-PLFT-RITKEELDEHDKTIQTL---GKNAIW 237
               N+D   +++K     I  L  D+ PL   R +  E   H+  +  +   G   IW
Sbjct: 180 -LNQNKDDGSEQQKG---GIKRLNSDRAPLVVLRASDTEQSAHEARLDLVNKEGGQCIW 234


>gi|167836205|ref|ZP_02463088.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           MSMB43]
          Length = 241

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 91/246 (36%), Positives = 138/246 (56%), Gaps = 13/246 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIE+G VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGSNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL DKP F+ I  +  DF   ++AE I HNA FD+GF++AE   +         + +
Sbjct: 60  TTEFLSDKPKFAEIVDQLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPSFTDHCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239
                ++          P ++    D P+    T EEL  H+  +  L K    + +W +
Sbjct: 176 VIDMLDEAGDAHRNSNEPRMAFSGLDLPVLA-ATGEELAAHEAQLDALDKSVKGSCVWRK 234

Query: 240 YISSNQ 245
             ++ +
Sbjct: 235 EAAAGE 240


>gi|115351214|ref|YP_773053.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD]
 gi|115281202|gb|ABI86719.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
          Length = 244

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 80/174 (45%), Positives = 114/174 (65%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  DR+IEIG VELL+   T     +++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ +  +  DF   ++AE I HNA FD+GF++AE  R++  P       +
Sbjct: 60  TTEFLSDKPKFAEVVDQIRDFV--KDAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171


>gi|254252714|ref|ZP_04946032.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158]
 gi|124895323|gb|EAY69203.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158]
          Length = 244

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/240 (38%), Positives = 135/240 (56%), Gaps = 17/240 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ +  +  +F   + AE I HNA FD+GF++AE   +   P     + +
Sbjct: 60  TTEFLSDKPKFAEVADQIREFV--RGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE------ELDEHDKTIQTLGKNAIW 237
                +D            +SL   D P+     +E      +LDE DK+++      +W
Sbjct: 176 VIDMLDDAATVGGAANGQRVSLAALDLPVLAASDEELAAHHAQLDELDKSVK---GTCVW 232


>gi|300724515|ref|YP_003713838.1| DNA polymerase III subunit epsilon [Xenorhabdus nematophila ATCC
           19061]
 gi|297631055|emb|CBJ91741.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Xenorhabdus nematophila ATCC
           19061]
          Length = 249

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 95/244 (38%), Positives = 143/244 (58%), Gaps = 23/244 (9%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F +++ P  R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRHFHIYIKPE-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119
           HGI+DEFL+DKP F+ I  EF +F   + AE I HNA FD+GF++ E  ++N+D     D
Sbjct: 66  HGISDEFLQDKPLFADIADEFIEFI--RGAELIIHNATFDIGFMDYEFSKLNRDIPPTAD 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +AR+  P  RN+L++LC RY I  S R+ HGALLD+ +LSDVY+ M  G +
Sbjct: 124 FCTITDSLMLARKLFPGKRNNLDALCDRYHIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183

Query: 180 QINF---GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GK 233
            + F   G  ++     +  K T P + L    K ++   + EEL +H+  +  +   G 
Sbjct: 184 SLAFSMEGEVSSHALVSEIHKITRPQVGL----KVIYA--SDEELTQHESRLDLVEKKGG 237

Query: 234 NAIW 237
           + +W
Sbjct: 238 SCLW 241


>gi|315126186|ref|YP_004068189.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
 gi|315014700|gb|ADT68038.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
          Length = 237

 Score =  158 bits (400), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 90/239 (37%), Positives = 137/239 (57%), Gaps = 17/239 (7%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG+D K   RIIEIG VEL++   T   F V++ P  R    EA+ +HGIT
Sbjct: 4   RQIVLDTETTGIDPKQGHRIIEIGCVELMNRRLTGNNFHVYINPQ-RSIEEEAIDVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSRI 123
           +EFL+DKP F  I  EF+D+   ++AE + HNA FD+G ++ E   +N+   +  D   +
Sbjct: 63  NEFLRDKPLFRDIAQEFFDYI--KDAELVIHNAPFDIGHMDNEFALLNQGYQNTHDFCGV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR  HP  +N+L++LC+RY +  + R+ HGALLDS +L+DVY+ M   G Q+  
Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDVDNTKRTLHGALLDSEILADVYLAMT--GGQVKL 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT-----IQTLGKNAIW 237
               N+D   +++K     I  L  D+     +   E ++         +Q  G + +W
Sbjct: 179 NLNQNKDDSSEDQKG---GIRRLNSDRAPLVVVAASEAEQSAHQSRLDIVQKEGGHCLW 234


>gi|188534758|ref|YP_001908555.1| DNA polymerase III subunit epsilon [Erwinia tasmaniensis Et1/99]
 gi|188029800|emb|CAO97680.1| DNA polymerase III epsilon subunit [Erwinia tasmaniensis Et1/99]
          Length = 249

 Score =  158 bits (400), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/245 (37%), Positives = 141/245 (57%), Gaps = 19/245 (7%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F V+L P+ R   PEA
Sbjct: 5   NTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEA 63

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGI DEFL DKP+F+ I  +F  + N   AE + HNA FD+GF++ E  ++ +    
Sbjct: 64  FGVHGIADEFLLDKPTFAQIADDFLAYIN--GAELVIHNASFDIGFMDYEFAKLQRGIAK 121

Query: 120 P---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                +I D+L++ARR  P  RN L++LC RY I  S R+ HGALLDS +L++V++ M  
Sbjct: 122 TDTFCKITDSLAMARRLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFLTMT- 180

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTL---G 232
            G Q +  F    +R  +++ +TV  I+  +    L   R ++EEL  H+  +  +   G
Sbjct: 181 -GGQTSLAFSMEGERGKQQDGETVHRIA--RPSSGLRVVRASEEELFAHEARLDLVEKKG 237

Query: 233 KNAIW 237
            + +W
Sbjct: 238 GSCLW 242


>gi|145631632|ref|ZP_01787397.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
 gi|144982766|gb|EDJ90295.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
          Length = 256

 Score =  158 bits (400), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 147/265 (55%), Gaps = 39/265 (14%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R   P+A
Sbjct: 3   NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RSVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDP 117
           +K+HGITDE L DKP F  I  +F D+ N   AE + HNA FDVGF++ E +++  N   
Sbjct: 62  IKVHGITDEMLADKPEFKEIAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLDLNVKT 119

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ MM G
Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL--------------FTRITKEELDE 223
           G       +TN    F EE+    ++  + ++K                  + T +EL  
Sbjct: 179 G-------QTN---LFDEEESVESDVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQA 228

Query: 224 HDKTIQTL----GKNAIWDRYISSN 244
           H + ++ +    G N +WD+   +N
Sbjct: 229 HLEFLKMMNKKSGNNCLWDKRFGNN 253


>gi|53805082|ref|YP_113230.1| DNA polymerase III subunit epsilon [Methylococcus capsulatus str.
           Bath]
 gi|53758843|gb|AAU93134.1| DNA polymerase III, epsilon subunit [Methylococcus capsulatus str.
           Bath]
          Length = 267

 Score =  158 bits (400), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/272 (37%), Positives = 138/272 (50%), Gaps = 44/272 (16%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD K   RIIEIG VELLD   T   F V++ P  R+    A+++HG+
Sbjct: 1   MRQIVLDTETTGLDPKAGHRIIEIGCVELLDRRITQNRFHVYINPE-REIDAGAIEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122
           T+EFL   P F +I  +F +F +   AE I HNA FDVGF++ EL  + ++     D   
Sbjct: 60  TNEFLAGMPVFRNIADDFLNFIS--GAELIIHNAAFDVGFLDHELSLLGENRGRIADYCG 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I DTL++AR+ HP  RN L++LCKRY +  S R  HGALLD+ +L+DVY+ M   G QI 
Sbjct: 118 ICDTLAMARKNHPGQRNSLDALCKRYNVDNSRRELHGALLDAEILADVYLAMT--GGQIT 175

Query: 183 F--------GFKTNEDRFFK-----------------------EEKKTVPNISLLKRDKP 211
                    G     D  F+                       E ++  P      R + 
Sbjct: 176 MLLEADAESGGARGSDGGFERFVVNPSAGSVHAQPGPLGANSVEREQAAPRSVDTARPRL 235

Query: 212 LFTRITKEELDEHDKTIQTLGK----NAIWDR 239
              R T EE + H   ++ + K    N +W R
Sbjct: 236 RVIRSTPEEAEAHAARLEAIAKASSGNCLWSR 267


>gi|221066578|ref|ZP_03542683.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
 gi|220711601|gb|EED66969.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
          Length = 243

 Score =  158 bits (400), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 82/173 (47%), Positives = 111/173 (64%), Gaps = 6/173 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL +   DR+IE+G VEL++   T     ++    GR + P+AL++HGIT
Sbjct: 3   RQIVLDTETTGLSAIDGDRLIELGCVELVNRKLTGNNLHLYFNA-GRDSHPDALRVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124
            EFLKDKP F     E W++   Q AE I HNA FD+GF+N EL+   + PL      +I
Sbjct: 62  TEFLKDKPRFEEKIDEIWEYL--QGAELIIHNAPFDLGFLNNELKLAKRPPLKQCVGGVI 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           DTL +A+  +P  RN L+SLC R G+  S+R+ HGALLD+ LL+DVYI +  G
Sbjct: 120 DTLVMAKEMYPGKRNSLDSLCDRLGVDNSNRTLHGALLDAELLADVYINLTRG 172


>gi|145635316|ref|ZP_01791019.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA]
 gi|145267460|gb|EDK07461.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA]
          Length = 255

 Score =  158 bits (400), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 99/259 (38%), Positives = 148/259 (57%), Gaps = 28/259 (10%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R   P+A
Sbjct: 3   NPNRQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           +K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N +   
Sbjct: 62  IKVHGITDEMLADKPEFKDLAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ MM G
Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178

Query: 178 GSQINFGFKTNEDRFFK-------EEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQ 229
           G    F  ++ E    +       EE K+  + S  LK  +P     T +EL  H + ++
Sbjct: 179 GQTNLFDEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQP-----TNDELQAHLEFLK 233

Query: 230 TL----GKNAIWDRYISSN 244
            +    G N +W++   +N
Sbjct: 234 MMNKKSGNNCLWEKRFGNN 252


>gi|307730502|ref|YP_003907726.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003]
 gi|307585037|gb|ADN58435.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003]
          Length = 244

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 79/174 (45%), Positives = 114/174 (65%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRI+E+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ I  +F DF   Q A+ I HNA FD+GF++AE   +   P+      I
Sbjct: 60  TTEFLSDKPKFAEIADQFRDFI--QGADLIIHNAPFDIGFLDAEFALLGLPPVSTYCGEI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G
Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171


>gi|119944269|ref|YP_941949.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
 gi|119862873|gb|ABM02350.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
          Length = 239

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 93/242 (38%), Positives = 142/242 (58%), Gaps = 22/242 (9%)

Query: 7   MRKIVFDIETTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R++V D ETTG++         RIIEIG VE+++   T R F V++ P+ R+  PEA+ 
Sbjct: 7   IRQVVLDTETTGMNKGGTIYVGHRIIEIGCVEVINRRLTGRHFHVYVKPD-REIDPEAIA 65

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118
           +HGITDEFL DKP+FS I  EF +F   + AE + HNA FDVGF++ E + +NK      
Sbjct: 66  VHGITDEFLHDKPAFSDIADEFIEFI--KGAELVIHNAPFDVGFMDQEFRFLNKRTKPTA 123

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           + S I DTL +AR+ +P  R  L++LC+  GI   HR  HGALLD+ +L+DVY+ M  G 
Sbjct: 124 EISTITDTLVMARKMYPGKRASLDALCRELGIDNKHRVLHGALLDAEILADVYLLMTGGQ 183

Query: 179 SQINFGFK-TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA-- 235
            ++N      N+    K  +KT   ++++          +++E   H+K +  + K+A  
Sbjct: 184 KKLNLSSSGQNDTNTGKRVRKTQSPLTIIS--------ASEDEQQAHEKRLDLIEKSASC 235

Query: 236 IW 237
           +W
Sbjct: 236 LW 237


>gi|121594487|ref|YP_986383.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42]
 gi|120606567|gb|ABM42307.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42]
          Length = 237

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 92/237 (38%), Positives = 136/237 (57%), Gaps = 15/237 (6%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++  DRIIE+G VEL++   T     ++L P  R +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSAEGGDRIIELGCVELVNRKLTGNNLHLYLNPE-RDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124
           +EFL+DKP F+    +   +   Q AE I HNA FDVGF++ EL+ +   PL      +I
Sbjct: 62  NEFLRDKPKFAERVQDILQYL--QGAELIIHNASFDVGFLDKELELVGLAPLSAHVGGVI 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++A+   P  RN L+SLC R G+  S R+ HGALLD+ LL+DVYI M  G   +   
Sbjct: 120 DTLAMAKEMFPGKRNSLDSLCDRLGVDNSSRTLHGALLDAELLADVYINMTRGQDALLI- 178

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237
               ++        TV  + L +    + T  + +EL EH++ +  + K++    IW
Sbjct: 179 ---MDEATAGAGGTTVAAVDLSRIALTVLTA-SAQELAEHEEVLVQIDKSSSGKTIW 231


>gi|171057726|ref|YP_001790075.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170775171|gb|ACB33310.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
          Length = 241

 Score =  158 bits (399), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 80/174 (45%), Positives = 116/174 (66%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  ++ DR++E+G VE+++   T R    +  P  R N  EA+++HG+
Sbjct: 1   MRQIFLDTETTGLSHESGDRVVELGCVEMVNRRLTGRNLHHYFNPQ-RANHEEAVRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           TD FL DKP FS++  EF DF   ++AE IAHNA FDVGF++AEL+RI   PL     ++
Sbjct: 60  TDAFLADKPLFSAVAQEFVDFV--RDAEIIAHNANFDVGFLDAELKRIGHPPLKQLVDKV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D+L +AR + P   N L++LC+R  +  + R+ HGALLD+ LL++VYI+M  G
Sbjct: 118 TDSLVMAREQFPGKANSLDALCRRLEVDNTSRTVHGALLDAGLLAEVYIRMTRG 171


>gi|146282599|ref|YP_001172752.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri A1501]
 gi|145570804|gb|ABP79910.1| DNA polymerase III, epsilon chain [Pseudomonas stutzeri A1501]
 gi|327480856|gb|AEA84166.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri DSM 4166]
          Length = 241

 Score =  158 bits (399), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 92/225 (40%), Positives = 130/225 (57%), Gaps = 13/225 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+  +   RIIEIG VE++    T R + V+L P+ R+    A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVEVIGRRLTGRHYHVYLQPD-REVDEGAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPS 121
           T+EFL DKP F  I  EF++F   ++A+ + HNA FD+GFIN E     Q+   +  D  
Sbjct: 60  TNEFLVDKPRFRDIADEFFEFI--KDAQLVIHNAAFDLGFINNEFALLGQQDRAEITDHC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR +HP  RN L++LCKRYG+  S R  HGALLD+ +L+DV++ M   G Q 
Sbjct: 118 TVLDTLLMARERHPGQRNSLDALCKRYGVDNSGRDLHGALLDAEILADVWLTMT--GGQT 175

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEH 224
           N     + +       +  P I  L  D+P     R + EEL  H
Sbjct: 176 NLSLAGDGESSDGGRPQPSP-IRRLPADRPRTAVLRASDEELAAH 219


>gi|107022359|ref|YP_620686.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia AU
           1054]
 gi|116689306|ref|YP_834929.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia
           HI2424]
 gi|105892548|gb|ABF75713.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647395|gb|ABK08036.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
          Length = 244

 Score =  158 bits (399), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 80/174 (45%), Positives = 113/174 (64%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ +  +  DF   ++AE I HNA FD+GF++AE  R+   P       +
Sbjct: 60  TTEFLSDKPKFAEVAHQILDFV--KDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171


>gi|237730199|ref|ZP_04560680.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2]
 gi|226905738|gb|EEH91656.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2]
          Length = 245

 Score =  158 bits (399), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 93/241 (38%), Positives = 138/241 (57%), Gaps = 18/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++ +D     +
Sbjct: 69  HGIADEFLLDKPTFADVADEFLDYI--RGAELVIHNASFDIGFMDYEFAKLKRDIPKTNE 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ MM GG 
Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYL-MMTGG- 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q    F    D   +++  T     + +  K      T EEL  H+     +Q  G + +
Sbjct: 185 QTTMAFSMEGDS--QQQNDTGIQRIVRQSSKLRVVFATDEELAAHESRLDLVQKKGGSCL 242

Query: 237 W 237
           W
Sbjct: 243 W 243


>gi|145641463|ref|ZP_01797041.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
 gi|145273754|gb|EDK13622.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.4-21]
          Length = 205

 Score =  158 bits (399), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 121/191 (63%), Gaps = 12/191 (6%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R   P+A
Sbjct: 3   NPNRQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           +K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N +   
Sbjct: 62  IKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ MM G
Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178

Query: 178 GSQINFGFKTN 188
           G QI +  K N
Sbjct: 179 GKQI-YSMKKN 188


>gi|187924850|ref|YP_001896492.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN]
 gi|187716044|gb|ACD17268.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans
           PsJN]
          Length = 244

 Score =  158 bits (399), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 78/174 (44%), Positives = 116/174 (66%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRI+E+G VE+++   T      ++ P  R++ P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARTGDRILELGCVEMVNRRLTGNNLHFYINPE-RESDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ I  +F DF   Q+A+ I HNA FD+GF++AE   +   P+      I
Sbjct: 60  TTEFLSDKPKFAEIADQFRDFI--QDADLIIHNAPFDIGFLDAEFALLGLPPVKTYCGEI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G
Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171


>gi|170732605|ref|YP_001764552.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|169815847|gb|ACA90430.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 244

 Score =  158 bits (399), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 80/174 (45%), Positives = 113/174 (64%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ +  +  DF   ++AE I HNA FD+GF++AE  R+   P       +
Sbjct: 60  TTEFLSDKPKFAEVAHQILDFV--KDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171


>gi|283783999|ref|YP_003363864.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168]
 gi|282947453|emb|CBG87000.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168]
          Length = 243

 Score =  158 bits (399), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 142/241 (58%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F ++L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHIYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++N+D P   S
Sbjct: 66  HGIADEFLLDKPTFADVADEFLDYI--RGAELVIHNASFDIGFMDYEFSKLNRDIPKTSS 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            + F  +    +  ++ ++T+  +    R K      + EE+  H+  +  +   G + +
Sbjct: 184 SMTFAMEGETQQ--QQGEETIQRLVRQAR-KLRVVFASDEEVAAHEARLDLVEKKGGSCL 240

Query: 237 W 237
           W
Sbjct: 241 W 241


>gi|253988342|ref|YP_003039698.1| DNA polymerase III subunit epsilon [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779792|emb|CAQ82953.1| putative DNA polymerase III epsilon chain [Photorhabdus
           asymbiotica]
          Length = 248

 Score =  158 bits (399), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 92/244 (37%), Positives = 144/244 (59%), Gaps = 23/244 (9%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R++V D ETTG++      +  +IIEIGAVE+++   T R F +++ P+ R   PEA ++
Sbjct: 7   RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHIYVKPD-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119
           HGI+DEFL+DKP F+ I  EF +F   + AE I HNA FD+GF++ E  ++N+D     D
Sbjct: 66  HGISDEFLQDKPLFADIADEFIEFI--RGAELIIHNAPFDIGFMDYEFGKLNRDIPPTTD 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L +AR   P  RN+L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKVTDSLQLARALFPGKRNNLDALCDRYDIDNSQRTLHGALLDAEILADVYLIMTGGQT 183

Query: 180 QINF---GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GK 233
            + F   G  +      + ++ T P  +L    K ++   T EEL  H+  +  +   G 
Sbjct: 184 ALAFSMEGEVSGSANVSEVQRITRPQTAL----KVIYA--TGEELAAHESRLDLVEKKGG 237

Query: 234 NAIW 237
           + +W
Sbjct: 238 SCLW 241


>gi|77360888|ref|YP_340463.1| DNA polymerase III subunit epsilon [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875799|emb|CAI87020.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 237

 Score =  158 bits (399), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 90/237 (37%), Positives = 141/237 (59%), Gaps = 13/237 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG+D K   RIIEIG VEL++   T   F V++ P  R +  EA+ +HGIT
Sbjct: 4   RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQ-RNSEEEAIDVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS--RI 123
           +EFL+DKP F  I  EF+D+   + AE + HNA FD+G ++ E   +N+  P   +  ++
Sbjct: 63  NEFLRDKPLFHQIAQEFFDYI--KGAELVIHNAPFDIGHMDNEFSLLNQGYPKTATFCQV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR  HP  +N+L++LC+RY +  + R+ HGALLDS +L+DVY+ M  G  ++N 
Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDVDNAKRTLHGALLDSEILADVYLAMTGGQVKLNL 180

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIW 237
               N+D    ++K  +  +S  +R   +    ++ E   H+  +  +   G + IW
Sbjct: 181 NQNKNDDT--DQQKGGIRRLS-AQRAPLVVLSASEAEQAAHEARLDIVNNEGGHCIW 234


>gi|53718980|ref|YP_107966.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           K96243]
 gi|53725133|ref|YP_102525.1| DNA polymerase III subunit epsilon [Burkholderia mallei ATCC 23344]
 gi|126449393|ref|YP_001080124.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10247]
 gi|167719045|ref|ZP_02402281.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei DM98]
 gi|167738046|ref|ZP_02410820.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 14]
 gi|167815230|ref|ZP_02446910.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 91]
 gi|167823638|ref|ZP_02455109.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 9]
 gi|167845182|ref|ZP_02470690.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           B7210]
 gi|167893733|ref|ZP_02481135.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 7894]
 gi|167902185|ref|ZP_02489390.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei NCTC
           13177]
 gi|167910426|ref|ZP_02497517.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 112]
 gi|167918451|ref|ZP_02505542.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           BCC215]
 gi|254188362|ref|ZP_04894873.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|52209394|emb|CAH35339.1| DNA polymerase III, epsilon chain [Burkholderia pseudomallei
           K96243]
 gi|52428556|gb|AAU49149.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
           23344]
 gi|126242263|gb|ABO05356.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC
           10247]
 gi|157936041|gb|EDO91711.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 240

 Score =  158 bits (399), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 92/238 (38%), Positives = 134/238 (56%), Gaps = 13/238 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VELL+   T +    ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGKNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL DKP F+ I     DF   ++AE I HNA FD+GF++AE   +         + +
Sbjct: 60  TTEFLSDKPKFAEIVDPLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPSFTDHCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237
                ++          P ++    D P+    T  EL  H+  +  L K+A    +W
Sbjct: 176 VIDMLDEAGDAHRNGDAPRMAFSGLDLPVLA-ATDAELAAHEAQLDALDKSAKGVCVW 232


>gi|58579186|ref|YP_197398.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417812|emb|CAI27016.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 242

 Score =  158 bits (399), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 93/239 (38%), Positives = 140/239 (58%), Gaps = 9/239 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   N +R+I  D ETTGLD+   DRIIE+G +EL+D   T + F  ++ P  R     A
Sbjct: 1   MSYYNGIREIALDTETTGLDADGGDRIIEMGCIELIDRVFTGKVFHEYINPE-RDIPYYA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGIT + LKDKP FS I  +F DF    N+  + HNA FD+ FI  EL +I K    
Sbjct: 60  TKIHGITVDMLKDKPKFSEIADKFLDFIG--NSVLVIHNAVFDIKFIKMELDKIQKSYNS 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +++DTL +AR+K P   + L++LCKR+ I++  R  HGALLD+ LL  VY+++M GG 
Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCKRFNISLQDRKFHGALLDATLLGKVYVQLM-GGL 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           Q +  F+ N   F   +     + S +   +P   ++++EE+ +H   ++ + KN IW+
Sbjct: 177 QRSLNFQDNSSMFQSSDYSHDVSRSYI---EPRLYKVSEEEIVKHKMLLEKI-KNPIWN 231


>gi|283834499|ref|ZP_06354240.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC
           29220]
 gi|291070049|gb|EFE08158.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC
           29220]
          Length = 245

 Score =  158 bits (399), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 92/241 (38%), Positives = 138/241 (57%), Gaps = 18/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R++V D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQVVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++ +D     +
Sbjct: 69  HGIADEFLLDKPTFAEVADEFLDYI--RGAELVIHNASFDIGFMDYEFAKLKRDIPKTNE 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ MM GG 
Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYL-MMTGG- 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q    F    D   +++  T     + +  K      T EEL  H+     +Q  G + +
Sbjct: 185 QTTMAFSMEGDS--QQQNDTGIQRIVRQSSKLRVVFATDEELAAHESRLDLVQKKGGSCL 242

Query: 237 W 237
           W
Sbjct: 243 W 243


>gi|27479696|gb|AAO17223.1| DnaQ [Photorhabdus luminescens]
          Length = 248

 Score =  158 bits (399), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 97/254 (38%), Positives = 146/254 (57%), Gaps = 29/254 (11%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R++V D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA ++
Sbjct: 7   RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYIQPD-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119
           HGI+DEFL+DKP F+ +  EF +F   + AE I HNA FD+GFI+ E  ++++D     D
Sbjct: 66  HGISDEFLQDKPLFADVADEFVEFI--RGAELIIHNAPFDIGFIDYEFGKLDRDIPPTAD 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR   P  RN+L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKITDSLQLARGLFPGKRNNLDALCDRYDIDNSKRTLHGALLDAEILADVYLIMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI-----TKEELDEHDKTIQTL--- 231
            + F  +         E     N+S ++R     T +     T EEL  H+  +  +   
Sbjct: 184 SLAFSMEG--------EIAGGANVSEIQRVTRSQTALKVVYATDEELAAHESRLDLVEKK 235

Query: 232 GKNAIWDRYISSNQ 245
           G + +W   ISS Q
Sbjct: 236 GGSCLW--RISSEQ 247


>gi|308049181|ref|YP_003912747.1| DNA polymerase III, epsilon subunit [Ferrimonas balearica DSM 9799]
 gi|307631371|gb|ADN75673.1| DNA polymerase III, epsilon subunit [Ferrimonas balearica DSM 9799]
          Length = 240

 Score =  157 bits (398), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 99/261 (37%), Positives = 146/261 (55%), Gaps = 42/261 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M +   +R+IVFD ETTG++          ++IEIG VEL++   T RT+ V++ P+ R 
Sbjct: 1   MTQAADLRQIVFDTETTGMNQGAGPHYLGHKLIEIGCVELINRKPTGRTYHVYIQPD-RP 59

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              EA+++HGITDEFL  KP F  I  EF++F   + AE IAHNA FD+GFI+ E + + 
Sbjct: 60  VDEEAIQVHGITDEFLVGKPRFGEIAEEFFEFI--RGAELIAHNANFDIGFIDYEFEMLG 117

Query: 115 K--DPLDPSRIIDTLSIAR----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           +     D   ++DTL +AR    R       +L++LC+ YGI  SHR+ HGALLD+ +L+
Sbjct: 118 RFGKLEDHCSLVDTLQLAREKKNRGEIQGNLNLDALCRFYGIDNSHRTLHGALLDAEILA 177

Query: 169 DVYIKMMVGGSQINFG---------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           DV++ M  G  ++NFG          +  EDR               +R K +    T +
Sbjct: 178 DVFLYMTGGQVKMNFGSGDGDAGGIIRLPEDR---------------RRTKVVLA--TAD 220

Query: 220 ELDEHDKTIQTLGKNAIWDRY 240
           ELD H K ++ L  +AIW R+
Sbjct: 221 ELDNHTKRME-LVSDAIWLRH 240


>gi|254245771|ref|ZP_04939092.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|124870547|gb|EAY62263.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
          Length = 305

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 80/174 (45%), Positives = 113/174 (64%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 62  MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 120

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ +  +  DF   ++AE I HNA FD+GF++AE  R+   P       +
Sbjct: 121 TTEFLSDKPKFAEVAHQILDFV--KDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGV 178

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G
Sbjct: 179 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 232


>gi|76810101|ref|YP_333003.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           1710b]
 gi|121601053|ref|YP_992607.1| DNA polymerase III subunit epsilon [Burkholderia mallei SAVP1]
 gi|124385495|ref|YP_001026592.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10229]
 gi|126441990|ref|YP_001058508.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 668]
 gi|126455280|ref|YP_001065768.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           1106a]
 gi|134282747|ref|ZP_01769450.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305]
 gi|217423557|ref|ZP_03455058.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576]
 gi|226196200|ref|ZP_03791785.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237811761|ref|YP_002896212.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238563612|ref|ZP_00438559.2| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse
           4]
 gi|242318034|ref|ZP_04817050.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1106b]
 gi|251767848|ref|ZP_02268597.2| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20]
 gi|254177751|ref|ZP_04884406.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
           10399]
 gi|254180217|ref|ZP_04886816.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1655]
 gi|254197669|ref|ZP_04904091.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13]
 gi|254199436|ref|ZP_04905802.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH]
 gi|254258454|ref|ZP_04949508.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1710a]
 gi|254298053|ref|ZP_04965506.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           406e]
 gi|254358851|ref|ZP_04975124.1| DNA polymerase III, epsilon subunit [Burkholderia mallei
           2002721280]
 gi|76579554|gb|ABA49029.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1710b]
 gi|121229863|gb|ABM52381.1| DNA polymerase III, epsilon subunit [Burkholderia mallei SAVP1]
 gi|124293515|gb|ABN02784.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC
           10229]
 gi|126221483|gb|ABN84989.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 668]
 gi|126228922|gb|ABN92462.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1106a]
 gi|134245833|gb|EBA45924.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305]
 gi|147749032|gb|EDK56106.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH]
 gi|148027978|gb|EDK85999.1| DNA polymerase III, epsilon subunit [Burkholderia mallei
           2002721280]
 gi|157807726|gb|EDO84896.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           406e]
 gi|160698790|gb|EDP88760.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
           10399]
 gi|169654410|gb|EDS87103.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13]
 gi|184210757|gb|EDU07800.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1655]
 gi|217393415|gb|EEC33436.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576]
 gi|225931786|gb|EEH27788.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237504517|gb|ACQ96835.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238520320|gb|EEP83781.1| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse
           4]
 gi|242141273|gb|EES27675.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1106b]
 gi|243061566|gb|EES43752.1| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20]
 gi|254217143|gb|EET06527.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1710a]
          Length = 253

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 93/242 (38%), Positives = 135/242 (55%), Gaps = 13/242 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R   MR+I+ D ETTGL+++  DRIIEIG VELL+   T +    ++ P  R + P AL 
Sbjct: 10  RFPDMRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGKNLHFYVNPE-RDSDPGALA 68

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-- 119
           +HG+T EFL DKP F+ I     DF   ++AE I HNA FD+GF++AE   +        
Sbjct: 69  VHGLTTEFLSDKPKFAEIVDPLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPSFTDH 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            + +IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  
Sbjct: 127 CAGVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG-- 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---- 235
           Q +      ++          P ++    D P+    T  EL  H+  +  L K+A    
Sbjct: 185 QESLVIDMLDEAGDAHRNGDAPRMAFSGLDLPVLA-ATDAELAAHEAQLDALDKSAKGVC 243

Query: 236 IW 237
           +W
Sbjct: 244 VW 245


>gi|148546962|ref|YP_001267064.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1]
 gi|148511020|gb|ABQ77880.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1]
          Length = 252

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 92/240 (38%), Positives = 132/240 (55%), Gaps = 8/240 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+   +  RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPL 118
           + +HGITD FL  KP F  +  EF+ F   Q A  + HNA FDVGFIN E   + + D  
Sbjct: 60  INVHGITDAFLVGKPRFGDVAEEFFQFI--QGATLVIHNAAFDVGFINNEFALLGQQDRA 117

Query: 119 DPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D S+   I+DTL +AR +HP  RN L++LCKRY I  S R  HGALLDS LL+DVY+ M 
Sbjct: 118 DISQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            G + ++      +     +         ++ R        + EEL+ H + +  + K+A
Sbjct: 178 GGQTSLSLAGNGADAEEDGQGAGGSEIRRIVGRAPGRVIMASAEELEAHAERLAAIAKSA 237


>gi|329847376|ref|ZP_08262404.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum
           C19]
 gi|328842439|gb|EGF92008.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum
           C19]
          Length = 229

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 88/231 (38%), Positives = 137/231 (59%), Gaps = 8/231 (3%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +IV D ETTG+D  K  R+IEIG +E+ D   T RTF  F+ P  R+  P+A+++HGI++
Sbjct: 4   EIVLDTETTGIDHRKGHRLIEIGCIEIEDLLPTGRTFHHFVDPE-REIEPDAIRVHGISN 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++ KP F  I  E  +F  ++    IAHNA FD GFIN E++R+++      + IDTL
Sbjct: 63  EKVRGKPKFGQIADELCEFIGDKRI--IAHNAAFDRGFINMEMERLSRVCHPDDQWIDTL 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            +AR K P   N L++LC+R+ I+++ R  HGAL+D+ LL+ VY++++ GG +     + 
Sbjct: 121 ELARNKFPGMANSLDALCRRFNISLAERDLHGALIDARLLASVYLELL-GGKERGLDLEM 179

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIW 237
              R   E  +    IS   R +PL  RIT  E+  H+  + + L   ++W
Sbjct: 180 ASARI--EAVQVANPISYGARPRPLAPRITAAEVAAHEAFVAKYLKDKSLW 228


>gi|229845439|ref|ZP_04465569.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1]
 gi|229811635|gb|EEP47334.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1]
          Length = 256

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 98/255 (38%), Positives = 144/255 (56%), Gaps = 29/255 (11%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R   P+A
Sbjct: 3   NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           +K+HGITDE L DKP F  I  +F D+ N   AE + HNA FDVGF++ E  ++N +   
Sbjct: 62  IKVHGITDEMLADKPEFKEIAQDFLDYIN--GAELLIHNAPFDVGFMDYEFCKLNLNVKT 119

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ MM G
Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178

Query: 178 GSQINFG---------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
           G    F           +  +++  +E K  V     LK  +P     T +EL  H + +
Sbjct: 179 GQTNLFDAEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQP-----TDDELQAHLELL 233

Query: 229 QTL----GKNAIWDR 239
           + +    G N +WD+
Sbjct: 234 KMINKKSGNNCLWDK 248


>gi|62178830|ref|YP_215247.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224582105|ref|YP_002635903.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62126463|gb|AAX64166.1| DNA polymerase III, epsilon subunit, 3-5 exonucleolytic
           proofreading function [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224466632|gb|ACN44462.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322713281|gb|EFZ04852.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 246

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 90/242 (37%), Positives = 139/242 (57%), Gaps = 19/242 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKEELDEHDK---TIQTLGKNA 235
            + F  +    R  ++ + T+  I     R + +F   T+EEL  H+     +Q  G + 
Sbjct: 187 SMTFAMEGETQR--QQGEATIQRIVRQASRLRVVFA--TEEELAAHESRLDLVQKKGGSC 242

Query: 236 IW 237
           +W
Sbjct: 243 LW 244


>gi|313498009|gb|ADR59375.1| DnaQ [Pseudomonas putida BIRD-1]
          Length = 252

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 92/240 (38%), Positives = 132/240 (55%), Gaps = 8/240 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+   +  RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPL 118
           + +HGITD FL  KP F  +  EF+ F   Q A  + HNA FDVGFIN E   + + D  
Sbjct: 60  INVHGITDAFLVGKPRFGDVAEEFFQFI--QGATLVIHNAAFDVGFINNEFALLGQQDRA 117

Query: 119 DPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D S+   I+DTL +AR +HP  RN L++LCKRY I  S R  HGALLDS LL+DVY+ M 
Sbjct: 118 DISQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            G + ++      +     +         ++ R        + EEL+ H + +  + K+A
Sbjct: 178 GGQTSLSLAGNGADAEEDGQGAGGSEIRRIVGRTPGRVIMASAEELEAHAERLAAIAKSA 237


>gi|170768002|ref|ZP_02902455.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627]
 gi|170123490|gb|EDS92421.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627]
          Length = 243

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/241 (36%), Positives = 138/241 (57%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL+ H+     +Q  G + +
Sbjct: 182 QTSMAFAMEGETQQQQGEVTIQRI-VRQASKLRIVFATDEELEAHEARLDLVQKKGGSCL 240

Query: 237 W 237
           W
Sbjct: 241 W 241


>gi|319794398|ref|YP_004156038.1| DNA polymerase iii, epsilon subunit [Variovorax paradoxus EPS]
 gi|315596861|gb|ADU37927.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus EPS]
          Length = 240

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 138/231 (59%), Gaps = 11/231 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++N DR+IE+G VEL     T     ++  P  R++  +ALK+HG+T
Sbjct: 3   RQIVLDTETTGLSAENGDRVIELGCVELFARKLTGNDLHIYFNPE-RESHEDALKVHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124
            +FL+DKP F+++ ++  ++   + AE I HNA FDVGF+N E +R    PL    + + 
Sbjct: 62  TDFLRDKPKFATLANDIIEYL--RGAELIIHNAAFDVGFLNKEFERAGLPPLRTFVAEVT 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++A+  +P  RN L++LC R+G+  S+R+ HGA LD+ LL+DVYI +  G   +   
Sbjct: 120 DTLAMAKLVYPGKRNSLDALCDRFGVDRSNRTFHGAKLDAQLLADVYINLTRGQDALLID 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
             +NE      +  TV  I L + + P+     ++EL  H+  +  L K++
Sbjct: 180 VASNE----PAQGTTVVAIDLSQFELPVIA-AGEQELAAHEAVLSQLDKSS 225


>gi|91793373|ref|YP_563024.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
 gi|91715375|gb|ABE55301.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
          Length = 242

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/191 (44%), Positives = 119/191 (62%), Gaps = 14/191 (7%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+I+ D ETTG++          RIIEIG VE+++   T RT+  ++ P G+   PEA+ 
Sbjct: 9   RQIILDTETTGMNQAGGAIYIGHRIIEIGCVEVINRRLTGRTYHQYINP-GQSIDPEAIA 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPL 118
           +HGITDE + ++P F  I  EF DF   Q AE +AHNA FDV F++ E   LQ       
Sbjct: 68  VHGITDERVANEPRFHQIAQEFIDFI--QGAEIVAHNASFDVSFMDHEFSMLQPRGPKTK 125

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D + I+D+L+IA+R HP  +N+L++LCKRYGI  S R+ HGALLD+ +L+DVY+ M   G
Sbjct: 126 DITDILDSLAIAKRLHPGQKNNLDALCKRYGIDNSRRTYHGALLDAEILADVYLLMT--G 183

Query: 179 SQINFGFKTNE 189
            QI F     +
Sbjct: 184 GQIKFNLSNEQ 194


>gi|30061767|ref|NP_835938.1| DNA polymerase III subunit epsilon [Shigella flexneri 2a str.
           2457T]
 gi|56479626|ref|NP_706156.2| DNA polymerase III subunit epsilon [Shigella flexneri 2a str. 301]
 gi|218547665|ref|YP_002381456.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ATCC
           35469]
 gi|30040009|gb|AAP15743.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str.
           2457T]
 gi|56383177|gb|AAN41863.2| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str. 301]
 gi|218355206|emb|CAQ87813.1| DNA polymerase III epsilon subunit [Escherichia fergusonii ATCC
           35469]
 gi|313646728|gb|EFS11187.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str.
           2457T]
 gi|332754119|gb|EGJ84489.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2747-71]
 gi|332761998|gb|EGJ92270.1| DNA polymerase III, epsilon subunit [Shigella flexneri 4343-70]
 gi|332764639|gb|EGJ94869.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-671]
 gi|332768614|gb|EGJ98795.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2930-71]
 gi|333009688|gb|EGK29138.1| DNA polymerase III, epsilon subunit [Shigella flexneri VA-6]
 gi|333010755|gb|EGK30181.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-272]
 gi|333021254|gb|EGK40507.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-227]
 gi|333022178|gb|EGK41418.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-304]
          Length = 243

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+     +Q  G + +
Sbjct: 182 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 W 237
           W
Sbjct: 241 W 241


>gi|170683943|ref|YP_001742338.1| DNA polymerase III subunit epsilon [Escherichia coli SMS-3-5]
 gi|331651120|ref|ZP_08352145.1| DNA polymerase III, epsilon subunit [Escherichia coli M718]
 gi|331671744|ref|ZP_08372540.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280]
 gi|170521661|gb|ACB19839.1| DNA polymerase III, epsilon subunit [Escherichia coli SMS-3-5]
 gi|281599565|gb|ADA72549.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2002017]
 gi|324111223|gb|EGC05206.1| DNA polymerase III [Escherichia fergusonii B253]
 gi|325496141|gb|EGC94000.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ECD227]
 gi|331050861|gb|EGI22913.1| DNA polymerase III, epsilon subunit [Escherichia coli M718]
 gi|331070733|gb|EGI42092.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280]
          Length = 246

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+     +Q  G + +
Sbjct: 185 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 W 237
           W
Sbjct: 244 W 244


>gi|218557151|ref|YP_002390064.1| DNA polymerase III subunit epsilon [Escherichia coli S88]
 gi|218688085|ref|YP_002396297.1| DNA polymerase III subunit epsilon [Escherichia coli ED1a]
 gi|218698838|ref|YP_002406467.1| DNA polymerase III subunit epsilon [Escherichia coli IAI39]
 gi|218703464|ref|YP_002410983.1| DNA polymerase III subunit epsilon [Escherichia coli UMN026]
 gi|293403294|ref|ZP_06647385.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412]
 gi|293408304|ref|ZP_06652143.1| DNA polymerase III [Escherichia coli B354]
 gi|298378908|ref|ZP_06988789.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302]
 gi|218363920|emb|CAR01585.1| DNA polymerase III epsilon subunit [Escherichia coli S88]
 gi|218368824|emb|CAR16572.1| DNA polymerase III epsilon subunit [Escherichia coli IAI39]
 gi|218425649|emb|CAR06436.1| DNA polymerase III epsilon subunit [Escherichia coli ED1a]
 gi|218430561|emb|CAR11427.1| DNA polymerase III epsilon subunit [Escherichia coli UMN026]
 gi|221361649|emb|CAX20320.1| DNA polymerase III, epsilon subunit [Escherichia coli]
 gi|291429147|gb|EFF02167.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412]
 gi|291471482|gb|EFF13965.1| DNA polymerase III [Escherichia coli B354]
 gi|294493054|gb|ADE91810.1| DNA polymerase III, epsilon subunit [Escherichia coli IHE3034]
 gi|298280021|gb|EFI21525.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302]
 gi|323948751|gb|EGB44651.1| DNA polymerase III [Escherichia coli H252]
 gi|323958799|gb|EGB54498.1| DNA polymerase III [Escherichia coli H263]
          Length = 243

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+     +Q  G + +
Sbjct: 182 QTSMAFAMEGETQQQQGETTIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 W 237
           W
Sbjct: 241 W 241


>gi|269140166|ref|YP_003296867.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202]
 gi|267985827|gb|ACY85656.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202]
 gi|304559999|gb|ADM42663.1| DNA polymerase III epsilon subunit [Edwardsiella tarda FL6-60]
          Length = 243

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/242 (38%), Positives = 141/242 (58%), Gaps = 19/242 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPD-RLVDPEAFTV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+D+FL DKPSF+ +  EF  F   + AE + HNA FD+GF++ E  ++ +D P   +
Sbjct: 66  HGISDDFLLDKPSFAEVADEFLAFI--RGAELVIHNAPFDIGFMDYEFAKLGRDLPKTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M   G 
Sbjct: 124 FCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMT--GG 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDK---TIQTLGKNA 235
           Q +  F ++ D   + +   +  +  ++  K L     ++ EL  H++    +Q  G + 
Sbjct: 182 QTSLAFSSDGDGTSQSQASEIRRV--VRGAKGLRVVYASEAELAAHEQRLDLVQKKGGSC 239

Query: 236 IW 237
           +W
Sbjct: 240 LW 241


>gi|284009180|emb|CBA76234.1| DNA polymerase III subunit epsilon [Arsenophonus nasoniae]
          Length = 254

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/245 (37%), Positives = 145/245 (59%), Gaps = 24/245 (9%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P  R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGIHYEGHNIIEIGAVEVINRRLTGRHFHVYIKP-ARLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS- 121
           HGI+DEFL+DKP+F+ I  EF DF   + AE + HNA FD+GF++ E  ++N+D + P+ 
Sbjct: 66  HGISDEFLQDKPTFAQIADEFLDFI--RGAELVIHNAPFDIGFMDYEFSKLNRD-IPPTA 122

Query: 122 ---RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              +I D+L +AR+  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M   G
Sbjct: 123 NFCQITDSLVLARKLFPGKRNNLDALCDRYHIDNSKRTLHGALLDAEILAEVYMAMT--G 180

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI--TKEELDEHDKTIQTL----G 232
            Q +  F  + +   +  +  V  I   KR     + +   +EE+  H+  +  +    G
Sbjct: 181 GQTSLAFSVDSEPGSEVYRGDVKRI---KRQATGLSVVYANQEEIAAHEARLDLIEKKGG 237

Query: 233 KNAIW 237
           K ++W
Sbjct: 238 KISLW 242


>gi|26246159|ref|NP_752198.1| DNA polymerase III subunit epsilon [Escherichia coli CFT073]
 gi|91209283|ref|YP_539269.1| DNA polymerase III subunit epsilon [Escherichia coli UTI89]
 gi|117622497|ref|YP_851410.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1]
 gi|227884794|ref|ZP_04002599.1| DNA polymerase III subunit epsilon [Escherichia coli 83972]
 gi|237707792|ref|ZP_04538273.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA]
 gi|300900029|ref|ZP_07118226.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1]
 gi|300936085|ref|ZP_07151027.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1]
 gi|300988192|ref|ZP_07178593.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1]
 gi|331656205|ref|ZP_08357167.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206]
 gi|331681596|ref|ZP_08382232.1| DNA polymerase III, epsilon subunit [Escherichia coli H299]
 gi|26106556|gb|AAN78742.1|AE016755_242 DNA polymerase III, epsilon chain [Escherichia coli CFT073]
 gi|91070857|gb|ABE05738.1| DNA polymerase III epsilon chain [Escherichia coli UTI89]
 gi|115511621|gb|ABI99695.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1]
 gi|226899002|gb|EEH85261.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA]
 gi|227838235|gb|EEJ48701.1| DNA polymerase III subunit epsilon [Escherichia coli 83972]
 gi|300356434|gb|EFJ72304.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1]
 gi|300407506|gb|EFJ91044.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1]
 gi|300458760|gb|EFK22253.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1]
 gi|307552062|gb|ADN44837.1| DNA polymerase III, epsilon chain [Escherichia coli ABU 83972]
 gi|307628303|gb|ADN72607.1| DNA polymerase III subunit epsilon [Escherichia coli UM146]
 gi|315289701|gb|EFU49094.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 110-3]
 gi|315292140|gb|EFU51492.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 153-1]
 gi|315300178|gb|EFU59415.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 16-3]
 gi|331054453|gb|EGI26462.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206]
 gi|331081170|gb|EGI52332.1| DNA polymerase III, epsilon subunit [Escherichia coli H299]
          Length = 246

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+     +Q  G + +
Sbjct: 185 QTSMAFAMEGETQQQQGETTIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 W 237
           W
Sbjct: 244 W 244


>gi|332286832|ref|YP_004418743.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7]
 gi|330430785|gb|AEC22119.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7]
          Length = 236

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/183 (44%), Positives = 115/183 (62%), Gaps = 6/183 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD ++  R++E+  VE+ + S T R   ++L P GR + PEAL +HG+
Sbjct: 1   MRQIVLDTETTGLDPAQGHRVVELACVEMENRSLTGRHLHLYLNP-GRDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL   P F  +  +  D+   ++AE I HNA FDV F+NAEL R      +    +I
Sbjct: 60  TTEFLSGHPRFEEVAQQLVDYV--KDAEVIIHNAAFDVKFLNAELTRAGLPVFNSLCGKI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L  AR  HP  RN L++LC+RYGI+ +HR+ HGALLDS LL+DV++ M  G   +  
Sbjct: 118 TDSLLHARELHPGKRNSLDALCERYGISNAHRTLHGALLDSELLADVWLAMTRGQDALLM 177

Query: 184 GFK 186
            F+
Sbjct: 178 DFE 180


>gi|301050549|ref|ZP_07197422.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1]
 gi|300297757|gb|EFJ54142.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1]
          Length = 246

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 138/241 (57%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
            + F  +    +  ++ + T+  I + +  K      T EEL  H+     +Q  G + +
Sbjct: 187 SMTFAMEGETQQ--QQGETTIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 W 237
           W
Sbjct: 244 W 244


>gi|300112990|ref|YP_003759565.1| DNA polymerase III subunit epsilon [Nitrosococcus watsonii C-113]
 gi|299538927|gb|ADJ27244.1| DNA polymerase III, epsilon subunit [Nitrosococcus watsonii C-113]
          Length = 243

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/240 (38%), Positives = 134/240 (55%), Gaps = 14/240 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ K   RIIEIG VEL    +T +TF  +L P  R+    ALK+HG+
Sbjct: 1   MRQIILDTETTGLEPKEGHRIIEIGGVELNCRRRTGQTFHCYLNPE-REVDEGALKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS---R 122
           ++EFL DKP F  I  EF  F   + AE + HNA FDVGF++ EL  +  +    S   +
Sbjct: 60  SNEFLSDKPRFIEIAEEFLAFI--KGAELVIHNAPFDVGFLDHELYLLGSNWGKVSVNCQ 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR++HP  +N+L++LCKRYGI  S R  HGALLD+ +L+ VY+ M   G Q++
Sbjct: 118 VLDTLQLARQRHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILAGVYLAMT--GGQVS 175

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKNA----IW 237
                  D              +     PL   R ++EE   H+  +  + K +    +W
Sbjct: 176 LSLHEYGDNSTSSRSGEGNYRPVSAERAPLKIARASREEQRAHEACLTAIDKTSAGACVW 235


>gi|288549963|ref|ZP_05968783.2| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288316782|gb|EFC55720.1| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 246

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/244 (37%), Positives = 142/244 (58%), Gaps = 23/244 (9%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF ++   + AE + HNA FD+GF++ E  ++N+D      
Sbjct: 69  HGIADEFLLDKPTFADVADEFLEYI--KGAELVIHNASFDIGFMDYEFSKLNRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++ARR  P  RN L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKVTDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLTMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGK 233
            + F  + NE +  + E   ++ V   S L+         + EEL +H+     +Q  G 
Sbjct: 187 SMKFSME-NESQQSQGEAGIQRLVRQASRLR-----VVHASDEELLKHESRLDLVQKKGG 240

Query: 234 NAIW 237
           + +W
Sbjct: 241 SCMW 244


>gi|260431958|ref|ZP_05785929.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415786|gb|EEX09045.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 240

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/247 (38%), Positives = 138/247 (55%), Gaps = 22/247 (8%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D ++ DRI+EIGA+EL ++  T  T+ V++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAIELWNHVATGETYHVYINPE-RSMPAEAFGVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             KDKP F+ I   F DF    +A  + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQKPEPGQITLKDKPVFAQIGQAFRDFVG--DARLVIHNAAFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +   P+   + +DTL+IAR++ P S   L++LC+R+ I  S+R  HGALLDS +L++VY+
Sbjct: 118 MGLPPIPMEQALDTLAIARKRFPGSPASLDALCRRFNIDNSNRVLHGALLDSEILAEVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           + ++GG Q +FG          +            R  PL  RIT EE   H+  ++ LG
Sbjct: 178 E-LIGGRQPDFGLSAAR----SDSGGGGETWRPGPRPAPLPPRITAEERAAHEAFVKKLG 232

Query: 233 KNAIWDR 239
            NA+W R
Sbjct: 233 DNALWTR 239


>gi|161504623|ref|YP_001571735.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865970|gb|ABX22593.1| hypothetical protein SARI_02738 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 246

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/242 (37%), Positives = 138/242 (57%), Gaps = 19/242 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKEELDEHDK---TIQTLGKNA 235
            + F  +    R  ++ + T+  I     R + +F   T EEL  H+     +Q  G + 
Sbjct: 187 SMTFAIEGETQR--QQGEATIQRIVRQASRLRVVFA--TDEELAAHESRLDLVQKKGGSC 242

Query: 236 IW 237
           +W
Sbjct: 243 LW 244


>gi|191171395|ref|ZP_03032944.1| DNA polymerase III, epsilon subunit [Escherichia coli F11]
 gi|190908329|gb|EDV67919.1| DNA polymerase III, epsilon subunit [Escherichia coli F11]
 gi|222032040|emb|CAP74779.1| DNA polymerase III subunit epsilon [Escherichia coli LF82]
 gi|312944818|gb|ADR25645.1| DNA polymerase III subunit epsilon [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|320197298|gb|EFW71914.1| DNA polymerase III epsilon subunit [Escherichia coli WV_060327]
          Length = 243

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNATFDIGFMDYEFSLLKRDIPKTNT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+     +Q  G + +
Sbjct: 182 QTSMAFAMEGETQQQQGETTIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 W 237
           W
Sbjct: 241 W 241


>gi|16272104|ref|NP_438306.1| DNA polymerase III subunit epsilon [Haemophilus influenzae Rd KW20]
 gi|1169396|sp|P43745|DPO3E_HAEIN RecName: Full=DNA polymerase III subunit epsilon
 gi|1573090|gb|AAC21808.1| DNA polymerase III, epsilon subunit (dnaQ) [Haemophilus influenzae
           Rd KW20]
          Length = 256

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/260 (37%), Positives = 146/260 (56%), Gaps = 29/260 (11%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG++      +   IIEIGAVEL++   T     +++ P+ R   P+A
Sbjct: 3   NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPD-RPXDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           +K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N +   
Sbjct: 62  IKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ MM G
Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178

Query: 178 GSQINFG---------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
           G    F           +  +++  +E K  V     LK  +P     T +EL  H + +
Sbjct: 179 GQTNLFDEEESVESGVIRVMQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLEFL 233

Query: 229 QTL----GKNAIWDRYISSN 244
           + +    G N +WD+   +N
Sbjct: 234 KMMNKKSGNNCLWDKRFGNN 253


>gi|110640430|ref|YP_668158.1| DNA polymerase III subunit epsilon [Escherichia coli 536]
 gi|300990975|ref|ZP_07179425.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1]
 gi|306813365|ref|ZP_07447558.1| DNA polymerase III subunit epsilon [Escherichia coli NC101]
 gi|110342022|gb|ABG68259.1| DNA polymerase III, epsilon chain [Escherichia coli 536]
 gi|300305641|gb|EFJ60161.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1]
 gi|305854128|gb|EFM54567.1| DNA polymerase III subunit epsilon [Escherichia coli NC101]
 gi|324009120|gb|EGB78339.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 57-2]
 gi|324011829|gb|EGB81048.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 60-1]
          Length = 246

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNATFDIGFMDYEFSLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+     +Q  G + +
Sbjct: 185 QTSMAFAMEGETQQQQGETTIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 W 237
           W
Sbjct: 244 W 244


>gi|281177435|dbj|BAI53765.1| DNA polymerase III epsilon subunit [Escherichia coli SE15]
 gi|330910061|gb|EGH38571.1| DNA polymerase 3 epsilon subunit [Escherichia coli AA86]
          Length = 243

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/241 (36%), Positives = 136/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+     +Q  G   +
Sbjct: 182 QTSMAFAMEGETQQQQGETTIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGTCL 240

Query: 237 W 237
           W
Sbjct: 241 W 241


>gi|215485371|ref|YP_002327802.1| DNA polymerase III subunit epsilon [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312964723|ref|ZP_07778974.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75]
 gi|215263443|emb|CAS07763.1| DNA polymerase III, epsilon subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312290744|gb|EFR18622.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75]
          Length = 243

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/241 (36%), Positives = 136/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNATFDIGFMDYEFSLLKRDIPKTNT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+     +Q  G   +
Sbjct: 182 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGTCL 240

Query: 237 W 237
           W
Sbjct: 241 W 241


>gi|157147189|ref|YP_001454508.1| DNA polymerase III subunit epsilon [Citrobacter koseri ATCC
           BAA-895]
 gi|157084394|gb|ABV14072.1| hypothetical protein CKO_02968 [Citrobacter koseri ATCC BAA-895]
          Length = 246

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/241 (37%), Positives = 138/241 (57%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS- 121
           HGI DEFL DKP F+ +  +F ++   + AE + HNA FD+GF++ E  ++++     S 
Sbjct: 69  HGIADEFLLDKPVFADVVDDFLEYI--RGAELVIHNASFDIGFMDYEFAKLSRGIPKTSE 126

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++ARR  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M   G 
Sbjct: 127 FCKITDSLALARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLAMT--GG 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+     +Q  G + +
Sbjct: 185 QTSMAFSMEGETQQQQGEATIQRI-VRQASKLRVVLATDEELMAHESRLDLVQKKGGSCL 243

Query: 237 W 237
           W
Sbjct: 244 W 244


>gi|212709216|ref|ZP_03317344.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM
           30120]
 gi|212688128|gb|EEB47656.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM
           30120]
          Length = 253

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/244 (38%), Positives = 143/244 (58%), Gaps = 22/244 (9%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P+ R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI+DEFL+DKP F+ I  EF +F   + AE + HNA FD+GF++ E +++N+  + P+ 
Sbjct: 66  HGISDEFLQDKPVFADIADEFIEFI--RGAELVIHNAPFDIGFMDYEFRKLNRG-IPPTA 122

Query: 123 ----IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               I D+L +AR+  P  RN+L++LC RY I  S R+ HGALLD+ +LSDVY+ M   G
Sbjct: 123 EFCTITDSLVLARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMT--G 180

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTL----GK 233
            Q +  F    +    E+   +  I   +   K L+   + EE+ EH+  +  +    GK
Sbjct: 181 GQTSLAFSMESESSNTEQANAIQRIERPVSGLKVLYA--SDEEVAEHEARLDIVDKKGGK 238

Query: 234 NAIW 237
             +W
Sbjct: 239 PCLW 242


>gi|331645384|ref|ZP_08346488.1| DNA polymerase III, epsilon subunit [Escherichia coli M605]
 gi|331045546|gb|EGI17672.1| DNA polymerase III, epsilon subunit [Escherichia coli M605]
          Length = 246

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/241 (36%), Positives = 136/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+     +Q  G   +
Sbjct: 185 QTSMAFAMEGETQQQQGETTIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGTCL 243

Query: 237 W 237
           W
Sbjct: 244 W 244


>gi|209517197|ref|ZP_03266042.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
 gi|209502333|gb|EEA02344.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
          Length = 244

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/174 (44%), Positives = 113/174 (64%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+ +  DRI+E+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNPRGGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ I  +F DF   Q+A+ I HNA FD+GF++ E   +   P+      I
Sbjct: 60  TTEFLSDKPKFAEIIDQFRDFI--QDADLIIHNAPFDIGFLDTEFALLGLPPVSTYCGEI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G
Sbjct: 118 IDTLAQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171


>gi|148827278|ref|YP_001292031.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG]
 gi|148718520|gb|ABQ99647.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG]
          Length = 256

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/260 (37%), Positives = 147/260 (56%), Gaps = 29/260 (11%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R   P+A
Sbjct: 3   NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           +K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N +   
Sbjct: 62  IKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  R++L++LC+R GI  S R+ HGALLD+ +L+DVY+ MM G
Sbjct: 120 DDICLVTDTLQMARQMYPGKRSNLDALCERLGIDNSKRTLHGALLDAEILADVYL-MMTG 178

Query: 178 GSQINFG---------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
           G    F              +++  +E K  V     LK  +P     T +EL  H + +
Sbjct: 179 GQTNLFDEEESVESGVIHVMQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLEFL 233

Query: 229 QTL----GKNAIWDRYISSN 244
           + +    G N +WD+   +N
Sbjct: 234 KMMNKKSGNNCLWDKRFGNN 253


>gi|73667124|ref|YP_303140.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia canis str. Jake]
 gi|72394265|gb|AAZ68542.1| DNA polymerase III, epsilon subunit :DNA polymerase 3, epsilon
           subunit [Ehrlichia canis str. Jake]
          Length = 239

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/233 (39%), Positives = 138/233 (59%), Gaps = 9/233 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R++V D ETTGLD    DRIIEIG VEL+D   T + F  ++ P  R     A K+HGI
Sbjct: 7   VREVVLDTETTGLDPDGGDRIIEIGCVELIDRVFTGKVFHEYINPE-RDIPYYATKIHGI 65

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + LKDKP FS I  +F +F N  N+  + HNA FD+ FI  EL +I KD     +++D
Sbjct: 66  TIDMLKDKPKFSEIADKFLEFVN--NSVLVIHNAGFDIKFIKMELDKIQKDYDSDFQVVD 123

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR+K P   + L++LC+R+ I++  R  HGALLD+ LL  VY+++M GG Q +  F
Sbjct: 124 TLILARKKFPGVSSTLDALCRRFNISLQDRKFHGALLDATLLGKVYVQLM-GGLQRSLDF 182

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
             + +     +   + N       +P F  +++EE+ +H   ++ + KN IW+
Sbjct: 183 SYSNNII---DTSNINNQCEDVAIEPRFYEVSEEEITQHKMLLEKI-KNPIWN 231


>gi|257483794|ref|ZP_05637835.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 178

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/172 (48%), Positives = 109/172 (63%), Gaps = 8/172 (4%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+  +   RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSR 122
           +EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +      D      
Sbjct: 68  NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M
Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177


>gi|258541965|ref|YP_003187398.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633043|dbj|BAH99018.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636100|dbj|BAI02069.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639155|dbj|BAI05117.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642209|dbj|BAI08164.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645264|dbj|BAI11212.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648319|dbj|BAI14260.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651372|dbj|BAI17306.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654363|dbj|BAI20290.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 224

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/235 (39%), Positives = 132/235 (56%), Gaps = 18/235 (7%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I+FD ETTGLD +  DR+IEI A+EL+    T R F   + P  R    EA ++HG T
Sbjct: 3   RSILFDTETTGLDPATGDRVIEIAALELVGDLPTGRNFHTLIDPE-RDVPEEASRVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+ KP F+ I  +F  F  +     IAHNA+FD GF+NAEL+R  K  L   R++DT
Sbjct: 62  RADLEGKPKFAEIADDFLAFVGDD--PLIAHNARFDFGFMNAELKRAGKKTLGLDRMVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +AR + P   N L++LC+R+G+ +S R+ H ALLD  LL+DVY+++M GG Q   G  
Sbjct: 120 LDMARERFPGMPNSLDALCRRFGVDLSARTTHNALLDCKLLADVYVELM-GGRQHGLGLM 178

Query: 187 TNEDRFFKEEKKTVPNI---SLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
                    E   +P++     + R K +  + T EEL  H   +  L K  +W+
Sbjct: 179 A--------EDGQLPSVMYEGPVNR-KAVRVQPTAEELAAHAAFVAGL-KEPVWE 223


>gi|294340001|emb|CAZ88365.1| DNA polymerase III subunit epsilon [Thiomonas sp. 3As]
          Length = 239

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/241 (37%), Positives = 143/241 (59%), Gaps = 25/241 (10%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL+ +  DRIIE+  VEL +   T + +  +L P+ R + P+ALK+HG+T
Sbjct: 3   RQIVLDTETTGLNPASGDRIIEVAGVELFNRRLTGKHYHAYLNPD-RASHPDALKVHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD------PLDP 120
           +EFL DKP F+ I  +  +F   ++AE I HNA FD  F++AEL+R+N+       PL  
Sbjct: 62  EEFLSDKPRFAQIADDLLEFV--RDAEIIIHNAPFDCAFLDAELERLNRPAFKQHVPL-- 117

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             + DTL++A+ + P   N+L++LCKR+GI  +HR+ HGALLD+ LL++VY+ +  G   
Sbjct: 118 --VTDTLAMAKLQFPGKFNNLDALCKRFGIDNAHRTLHGALLDAELLAEVYLSLTRGQES 175

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAI 236
           +    +T + +      + + + SLL R        + +E   H+  +Q L K     +I
Sbjct: 176 LVIDLETPQQQMSVASHR-LDHFSLLVRAP------SSDEQAAHEAFLQLLDKKSQGKSI 228

Query: 237 W 237
           W
Sbjct: 229 W 229


>gi|333008996|gb|EGK28455.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-218]
          Length = 243

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAVFDIGFMDYEFSLLKRDIPKTNT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+     +Q  G + +
Sbjct: 182 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 W 237
           W
Sbjct: 241 W 241


>gi|237807686|ref|YP_002892126.1| DNA polymerase III, epsilon subunit [Tolumonas auensis DSM 9187]
 gi|237499947|gb|ACQ92540.1| DNA polymerase III, epsilon subunit [Tolumonas auensis DSM 9187]
          Length = 249

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/235 (36%), Positives = 137/235 (58%), Gaps = 14/235 (5%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R ++ D ETTG++          RIIEIG VE+++   T   + V++ P+ R    EA++
Sbjct: 8   RYVILDTETTGMNQSGGPVYIGHRIIEIGCVEVINRRLTGNHYHVYIKPD-RLVDEEAIR 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLD 119
           +HGITD FL DKP F++I  EF DF   + AE + HNA FDVGFI+ E  ++   +   D
Sbjct: 67  VHGITDAFLADKPPFAAIAQEFRDFI--RGAELVIHNASFDVGFIDHEFNKLGWTERVKD 124

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             R+ D+L++AR + P  RN L++LC R+GI  SHR+ HGALLD+ +L+DVY+ M  G +
Sbjct: 125 ICRVTDSLALARGQFPGKRNSLDALCTRFGIDNSHRTLHGALLDAEILADVYLLMTGGQT 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGK 233
           ++      N++        +   + +++R+  L     + +EL  H+K +  + K
Sbjct: 185 RLELHNTVNDNN--SASSASAQQLKMIQRNGSLKVLSASADELAAHEKRLDLVAK 237


>gi|83749368|ref|ZP_00946363.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551]
 gi|207742873|ref|YP_002259265.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum
           IPO1609]
 gi|83723945|gb|EAP71128.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551]
 gi|206594267|emb|CAQ61194.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum
           IPO1609]
          Length = 242

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 81/176 (46%), Positives = 115/176 (65%), Gaps = 10/176 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR+IEIG VEL++   T R    ++ P  R+  P A+ +HGI
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPE-REIDPGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPS 121
           T+EF+ DKP F+ + +E  D+   Q AE I HNA FD+GF++ E +R+     ++ LD  
Sbjct: 60  TNEFVADKPKFAEVVAEIRDYV--QGAEAIIHNAAFDLGFLDMEFRRLGLPSFREHLDGH 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             IDTL  ARR  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G
Sbjct: 118 --IDTLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRG 171


>gi|195938587|ref|ZP_03083969.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           EC4024]
 gi|217324145|ref|ZP_03440229.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|217320366|gb|EEC28790.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|320638235|gb|EFX07963.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           G5101]
 gi|320643619|gb|EFX12763.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str.
           493-89]
 gi|320654630|gb|EFX22631.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660198|gb|EFX27708.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 246

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  + + +  K      T EEL  H+     +Q  G + +
Sbjct: 185 QTSMAFAMEGETQQQQGEATIQRL-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 W 237
           W
Sbjct: 244 W 244


>gi|15799891|ref|NP_285903.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7
           EDL933]
 gi|15829465|ref|NP_308238.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           Sakai]
 gi|82775601|ref|YP_401948.1| DNA polymerase III subunit epsilon [Shigella dysenteriae Sd197]
 gi|168750163|ref|ZP_02775185.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757208|ref|ZP_02782215.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168763423|ref|ZP_02788430.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168776181|ref|ZP_02801188.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782940|ref|ZP_02807947.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789658|ref|ZP_02814665.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|168800383|ref|ZP_02825390.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|189403362|ref|ZP_02794985.2| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|208809432|ref|ZP_03251769.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813334|ref|ZP_03254663.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818379|ref|ZP_03258699.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400894|ref|YP_002268818.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|254791342|ref|YP_003076179.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223754|ref|ZP_05938035.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255836|ref|ZP_05948369.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281032|ref|YP_003497850.1| DNA polymerase III, epsilon subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|293413470|ref|ZP_06656119.1| DNA polymerase III [Escherichia coli B185]
 gi|309787110|ref|ZP_07681722.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617]
 gi|12512943|gb|AAG54511.1|AE005196_9 DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EDL933]
 gi|13359667|dbj|BAB33634.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|81239749|gb|ABB60459.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae Sd197]
 gi|187768434|gb|EDU32278.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015573|gb|EDU53695.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999632|gb|EDU68618.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355702|gb|EDU74121.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361034|gb|EDU79453.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366358|gb|EDU84774.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370736|gb|EDU89152.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|189377309|gb|EDU95725.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|208729233|gb|EDZ78834.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734611|gb|EDZ83298.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738502|gb|EDZ86184.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162294|gb|ACI39727.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209745474|gb|ACI71044.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|209745476|gb|ACI71045.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|209745478|gb|ACI71046.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|209745480|gb|ACI71047.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|209745482|gb|ACI71048.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|254590742|gb|ACT70103.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|290760905|gb|ADD54866.1| DNA polymerase III, epsilon subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|291433528|gb|EFF06501.1| DNA polymerase III [Escherichia coli B185]
 gi|308924688|gb|EFP70183.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617]
 gi|320190264|gb|EFW64914.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           EC1212]
 gi|320650355|gb|EFX18832.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str. H
           2687]
 gi|320665449|gb|EFX32511.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326338809|gb|EGD62628.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           1044]
 gi|326342399|gb|EGD66179.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           1125]
          Length = 243

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  + + +  K      T EEL  H+     +Q  G + +
Sbjct: 182 QTSMAFAMEGETQQQQGEATIQRL-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 W 237
           W
Sbjct: 241 W 241


>gi|300949353|ref|ZP_07163365.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1]
 gi|300958303|ref|ZP_07170446.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1]
 gi|301029642|ref|ZP_07192704.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1]
 gi|301645470|ref|ZP_07245407.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1]
 gi|307136810|ref|ZP_07496166.1| DNA polymerase III subunit epsilon [Escherichia coli H736]
 gi|331640665|ref|ZP_08341812.1| DNA polymerase III, epsilon subunit [Escherichia coli H736]
 gi|1552785|gb|AAB08637.1| DNA polymerase III epsilon chain [Escherichia coli]
 gi|260450588|gb|ACX41010.1| DNA polymerase III, epsilon subunit [Escherichia coli DH1]
 gi|299877469|gb|EFI85680.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1]
 gi|300315009|gb|EFJ64793.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1]
 gi|300451236|gb|EFK14856.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1]
 gi|301076259|gb|EFK91065.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1]
 gi|331040039|gb|EGI12247.1| DNA polymerase III, epsilon subunit [Escherichia coli H736]
          Length = 246

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EE+  H+     +Q  G + +
Sbjct: 185 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEEIAAHEARLDLVQKKGGSCL 243

Query: 237 W 237
           W
Sbjct: 244 W 244


>gi|16128202|ref|NP_414751.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. MG1655]
 gi|89107090|ref|AP_000870.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. W3110]
 gi|170079846|ref|YP_001729166.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|238899608|ref|YP_002925404.1| DNA polymerase III epsilon subunit [Escherichia coli BW2952]
 gi|256024146|ref|ZP_05438011.1| DNA polymerase III subunit epsilon [Escherichia sp. 4_1_40B]
 gi|118805|sp|P03007|DPO3E_ECOLI RecName: Full=DNA polymerase III subunit epsilon
 gi|42063|emb|CAA27661.1| unnamed protein product [Escherichia coli]
 gi|147679|gb|AAA24564.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|1786409|gb|AAC73320.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. MG1655]
 gi|4902952|dbj|BAA77886.1| DNA polymerase III epsilon subunit [Escherichia coli str. K12
           substr. W3110]
 gi|169887681|gb|ACB01388.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|238860830|gb|ACR62828.1| DNA polymerase III epsilon subunit [Escherichia coli BW2952]
 gi|315134900|dbj|BAJ42059.1| DNA polymerase III subunit epsilon [Escherichia coli DH1]
 gi|315616887|gb|EFU97504.1| DNA polymerase III, epsilon subunit [Escherichia coli 3431]
 gi|323943406|gb|EGB39558.1| DNA polymerase III [Escherichia coli E482]
 gi|332341543|gb|AEE54877.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli UMNK88]
          Length = 243

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EE+  H+     +Q  G + +
Sbjct: 182 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEEIAAHEARLDLVQKKGGSCL 240

Query: 237 W 237
           W
Sbjct: 241 W 241


>gi|292487330|ref|YP_003530202.1| DNA polymerase III subunit epsilon [Erwinia amylovora CFBP1430]
 gi|292898576|ref|YP_003537945.1| DNA polymerase III subunit epsilon [Erwinia amylovora ATCC 49946]
 gi|291198424|emb|CBJ45532.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC 49946]
 gi|291552749|emb|CBA19794.1| DNA polymerase III epsilon subunit [Erwinia amylovora CFBP1430]
 gi|312171436|emb|CBX79694.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC
           BAA-2158]
          Length = 249

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/248 (37%), Positives = 142/248 (57%), Gaps = 25/248 (10%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F V+L P+ R   PEA
Sbjct: 5   NTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLIDPEA 63

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN---AELQRINKD 116
             +HGI DEFL DKP+F+ I  +F  + N   AE + HNA FD+GF++   A+LQR    
Sbjct: 64  FGVHGIADEFLLDKPTFAQIADDFLAYIN--GAELVIHNASFDIGFMDYEFAKLQRGIAK 121

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLDS +L++V++ M  
Sbjct: 122 TETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFLTMT- 180

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL----FTRITKEELDEHDKTIQTL- 231
            G Q +  F    +R  +++ +T+  I+     +P       R +++EL  H+  +  + 
Sbjct: 181 -GGQTSLAFSMEGEREKQQDGETIQRIA-----RPASGLRVVRASEQELMAHEARLDLVE 234

Query: 232 --GKNAIW 237
             G + +W
Sbjct: 235 KKGGSCLW 242


>gi|85713113|ref|ZP_01044147.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145]
 gi|85693061|gb|EAQ31025.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145]
          Length = 236

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/238 (35%), Positives = 138/238 (57%), Gaps = 12/238 (5%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG++  +  RIIEIG VEL+D   T   F V++ P  R    EA+ +HGI
Sbjct: 1   MRQIVLDTETTGINPDDGHRIIEIGCVELIDRKPTGNHFHVYINPE-RVVEDEAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSR 122
           T+E+L DKP F+ +   F DF   + ++ + HNA FDVG ++AE +R+ K      D   
Sbjct: 60  TNEYLADKPVFAQVVDAFIDFI--KGSQLVIHNAPFDVGHMDAEFKRLGKMYGKTYDYCD 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++D+L +AR K P  RN L++LCK + +  S R  HGALLD+ +L+DVY+ M  G + ++
Sbjct: 118 VLDSLQLAREKRPGQRNSLDALCKAFHVDNSARELHGALLDAEILADVYLAMTGGQTALS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAIW 237
              +  ++    +E   + + ++  R +    R T +E ++H +    +++ G   +W
Sbjct: 178 LHGQNQDNE--NQEPGAIAHQAIKNRPQLKVLRATADEEEQHQQRLAIVKSEGGACLW 233


>gi|161615575|ref|YP_001589540.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161364939|gb|ABX68707.1| hypothetical protein SPAB_03350 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 246

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/242 (36%), Positives = 140/242 (57%), Gaps = 19/242 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP F+ +  EF D+   ++AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYI--RDAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKEELDEHDK---TIQTLGKNA 235
            + F  +    R  ++ + T+  I     R + +F   ++EEL  H+     +Q  G + 
Sbjct: 187 SMTFAMEGETQR--QQGEATIQRIVRQASRLRVVFA--SEEELAAHESRLDLVQKKGGSC 242

Query: 236 IW 237
           +W
Sbjct: 243 LW 244


>gi|160899427|ref|YP_001565009.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1]
 gi|160365011|gb|ABX36624.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1]
          Length = 238

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 81/173 (46%), Positives = 111/173 (64%), Gaps = 6/173 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL + N DR+IE+G VE+++   T     ++    GR + P+AL++HGIT
Sbjct: 3   RQIILDTETTGLSADNGDRLIELGCVEMVNRKLTGNNLHLYFNA-GRDSHPDALRVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124
            EFLKDKP F     E W++   Q AE I HNA FD+GF+N EL+  N+ P+    S +I
Sbjct: 62  TEFLKDKPRFEHKVDEIWEYL--QGAELIIHNAPFDLGFLNKELELANRPPIRQCVSGVI 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           DTL +A+   P  RN L+SLC R  +  S R+ HGALLD+ LL+DVYI +  G
Sbjct: 120 DTLVMAKEMFPGKRNSLDSLCDRLEVDNSGRTLHGALLDAELLADVYINLTRG 172


>gi|295096912|emb|CBK86002.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 246

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 140/241 (58%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL +KP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++N+D      
Sbjct: 69  HGIADEFLLNKPTFADVADEFLDYI--RGAELVIHNASFDIGFMDYEFSKLNRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLTMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
            + F  + NE +  ++E      +    R + +    + EEL  H+     +Q  G + +
Sbjct: 187 SMKFSME-NESQQTRDEGGIQRIVRQANRLRVVLA--SDEELMNHESRLDLVQKKGGSCL 243

Query: 237 W 237
           W
Sbjct: 244 W 244


>gi|260913733|ref|ZP_05920209.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella
           dagmatis ATCC 43325]
 gi|260632272|gb|EEX50447.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella
           dagmatis ATCC 43325]
          Length = 253

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/248 (37%), Positives = 147/248 (59%), Gaps = 21/248 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ P+ R   P+A+K+
Sbjct: 9   RQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPD-RPVDPDAIKV 67

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGITDE L DKP+F+ I  +F ++   Q AE + HNA FD+GF++ E  ++N   L+ S 
Sbjct: 68  HGITDEMLADKPTFNEIAQQFIEYI--QGAELLIHNASFDIGFMDYEFSKLNIG-LNTSE 124

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           I    DTL +AR+ +P  RN L++LC R GI  S R+ HGALLD+ +L+DVY+ M   G 
Sbjct: 125 ICLITDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMT--GG 182

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGK----N 234
           Q +   ++  +      ++ V +  +  +D K L    T++EL  H + I+ L K    N
Sbjct: 183 QTSLFDESEPEIIVATTQEEVQSAVVFSQDLKKLMP--TEDELQAHIEYIKLLNKKSKGN 240

Query: 235 AIWDRYIS 242
            +W++ +S
Sbjct: 241 CLWEKRLS 248


>gi|238913716|ref|ZP_04657553.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 246

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/242 (36%), Positives = 139/242 (57%), Gaps = 19/242 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPVFADVIDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKEELDEHDK---TIQTLGKNA 235
            + F  +    R  ++ + T+  I     R + +F   ++EEL  H+     +Q  G + 
Sbjct: 187 SMTFAMEGETQR--QQGEATIQRIVRQASRLRVVFA--SEEELAAHESRLDLVQKKGGSC 242

Query: 236 IW 237
           +W
Sbjct: 243 LW 244


>gi|110804261|ref|YP_687782.1| DNA polymerase III subunit epsilon [Shigella flexneri 5 str. 8401]
 gi|110613809|gb|ABF02476.1| DNA polymerase III, epsilon subunit [Shigella flexneri 5 str. 8401]
          Length = 246

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/241 (36%), Positives = 136/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L +AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 127 FCKVTDSLVVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+     +Q  G + +
Sbjct: 185 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 W 237
           W
Sbjct: 244 W 244


>gi|167995093|ref|ZP_02576183.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232195|ref|ZP_02657253.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168239998|ref|ZP_02664930.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261338|ref|ZP_02683311.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465317|ref|ZP_02699199.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819164|ref|ZP_02831164.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194445947|ref|YP_002039498.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449519|ref|YP_002044248.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194471875|ref|ZP_03077859.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197248793|ref|YP_002145264.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263319|ref|ZP_03163393.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198244203|ref|YP_002214220.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389565|ref|ZP_03216176.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|213419655|ref|ZP_03352721.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213428417|ref|ZP_03361167.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213646369|ref|ZP_03376422.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213852644|ref|ZP_03382176.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289828784|ref|ZP_06546543.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|194404610|gb|ACF64832.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407823|gb|ACF68042.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458239|gb|EDX47078.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195631798|gb|EDX50318.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197212496|gb|ACH49893.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241574|gb|EDY24194.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197938719|gb|ACH76052.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602010|gb|EDZ00556.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205327163|gb|EDZ13927.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333347|gb|EDZ20111.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339912|gb|EDZ26676.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344083|gb|EDZ30847.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349720|gb|EDZ36351.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|312911229|dbj|BAJ35203.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320084513|emb|CBY94305.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224918|gb|EFX49979.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323128579|gb|ADX16009.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326621964|gb|EGE28309.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326626623|gb|EGE32966.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 246

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/242 (36%), Positives = 139/242 (57%), Gaps = 19/242 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKEELDEHDK---TIQTLGKNA 235
            + F  +    R  ++ + T+  I     R + +F   ++EEL  H+     +Q  G + 
Sbjct: 187 SMTFAMEGETQR--QQGEATIQRIVRQASRLRVVFA--SEEELAAHESRLDLVQKKGGSC 242

Query: 236 IW 237
           +W
Sbjct: 243 LW 244


>gi|94311147|ref|YP_584357.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34]
 gi|93354999|gb|ABF09088.1| DNA polymerase III epsilon subunit [Cupriavidus metallidurans CH34]
          Length = 241

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 114/174 (65%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +  DR+IEIG VEL++   T R    ++ P  R    +A+ +HGI
Sbjct: 1   MRQIVLDTETTGLNHATGDRLIEIGCVELVNRRLTGRHLHFYVNPE-RDIHEDAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T +FL DKP F+ I ++  DF   Q+AE I HNA FD+GF++ E QR++  P     S +
Sbjct: 60  TLDFLADKPKFAEIVNDVRDFV--QDAELIIHNAPFDLGFLDMEFQRLDLPPFRQHASNV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL  AR+  P  RN L++LC R G++ SHR+ HGALLD+ LL++VY+ M  G
Sbjct: 118 IDTLREARQMFPGKRNSLDALCDRLGVSNSHRTLHGALLDAELLAEVYLAMTRG 171


>gi|325277453|ref|ZP_08143061.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
 gi|324097411|gb|EGB95649.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
          Length = 252

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/240 (37%), Positives = 129/240 (53%), Gaps = 8/240 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+   +  RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDKRYVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINK 115
           + +HGITD FL  KP F+ +  EF++F   Q A  + HNA FDVGFIN E     Q+   
Sbjct: 60  INVHGITDAFLVGKPRFADVADEFFEFI--QGATLVIHNAAFDVGFINNEFALLGQQHRA 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D      ++DTL +AR +HP  RN L++LCKRY I  S R  HGALLDS LL+DVY+ M 
Sbjct: 118 DVSQYCTVLDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            G + ++      +     +         +  R          +EL+ H + +  + K+A
Sbjct: 178 GGQTSLSLAGHGADAEGDGQAGGGSEIRRITGRAPGRVIMANAQELEAHAERLAAIAKSA 237


>gi|16759250|ref|NP_454867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16763647|ref|NP_459262.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29142975|ref|NP_806317.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56414616|ref|YP_151691.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363544|ref|YP_002143181.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|205351595|ref|YP_002225396.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207855776|ref|YP_002242427.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|60392203|sp|P0A1G9|DPO3E_SALTY RecName: Full=DNA polymerase III subunit epsilon
 gi|60392204|sp|P0A1H0|DPO3E_SALTI RecName: Full=DNA polymerase III subunit epsilon
 gi|25299960|pir||AF0534 DNA polymerase III epsilon chain [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|1172157|gb|AAA86422.1| dnaQ [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|1794290|gb|AAC44792.1| DNA polymerase III epsilon chain [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16418764|gb|AAL19221.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16501541|emb|CAD08718.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138607|gb|AAO70177.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56128873|gb|AAV78379.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095021|emb|CAR60567.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|205271376|emb|CAR36169.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206707579|emb|CAR31853.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261245489|emb|CBG23279.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267991951|gb|ACY86836.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156885|emb|CBW16361.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|332987210|gb|AEF06193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 243

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/242 (36%), Positives = 139/242 (57%), Gaps = 19/242 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKEELDEHDK---TIQTLGKNA 235
            + F  +    R  ++ + T+  I     R + +F   ++EEL  H+     +Q  G + 
Sbjct: 184 SMTFAMEGETQR--QQGEATIQRIVRQASRLRVVFA--SEEELAAHESRLDLVQKKGGSC 239

Query: 236 IW 237
           +W
Sbjct: 240 LW 241


>gi|260583276|ref|ZP_05851052.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127]
 gi|260093683|gb|EEW77595.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127]
          Length = 256

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/260 (36%), Positives = 148/260 (56%), Gaps = 29/260 (11%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R   P+A
Sbjct: 3   NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           +K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N +   
Sbjct: 62  IKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  R++L++LC+R GI  S R+ HGALLD+ +L+DVY+ MM G
Sbjct: 120 DDICLVTDTLQMARQMYPGKRSNLDALCERLGIDNSKRTLHGALLDAEILADVYL-MMTG 178

Query: 178 GSQINF---------GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
           G    F           +  +++  +E K  V     LK  +P     T +EL  H + +
Sbjct: 179 GQTNLFDEEESVESEVIRVMQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLEFL 233

Query: 229 QTL----GKNAIWDRYISSN 244
           + +    G N +W++   +N
Sbjct: 234 KMMNKKSGNNCLWEKRFGNN 253


>gi|91784549|ref|YP_559755.1| DNA polymerase III subunit epsilon [Burkholderia xenovorans LB400]
 gi|91688503|gb|ABE31703.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
          Length = 244

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 78/174 (44%), Positives = 112/174 (64%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRI+E+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F  I  +F DF   Q A+ I HNA FD+GF++ E   +   P+      I
Sbjct: 60  TTEFLSDKPKFGEIADQFRDFI--QGADLIIHNAPFDIGFLDVEFALLGLPPVSTYCGEI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G
Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171


>gi|110834086|ref|YP_692945.1| DNA polymerase III subunit epsilon [Alcanivorax borkumensis SK2]
 gi|110647197|emb|CAL16673.1| DNA polymerase III, epsilon subunit [Alcanivorax borkumensis SK2]
          Length = 247

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 86/231 (37%), Positives = 132/231 (57%), Gaps = 8/231 (3%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTGL+  +  R+IEIG VE+ +   T  +  ++L P  R+    AL +HGI
Sbjct: 1   MRQVVLDTETTGLEPNDGHRVIEIGCVEMENRRLTGNSLHLYLNPE-REIDAGALAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122
           + EFL DKP+F  +  EF  F +   AE + HNA FDVGF+N EL+R+        +   
Sbjct: 60  SSEFLADKPTFDKVVDEFLAFVD--GAELVIHNAPFDVGFLNHELRRLGTRYGTIEQRCG 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+KHP  +N L++LC+RY +   HR  HGALLD+ +L+DVY+ M  G +++ 
Sbjct: 118 VLDTLVMARQKHPGQKNSLDALCRRYFVENGHRELHGALLDAEILADVYLAMTGGQTRLF 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
            G   + +R      +T+  +S   R      R ++ E   H   +  + K
Sbjct: 178 SGGNDSSERGGGAAAETIRRLS-ADRVPLCVVRASENEQQRHRNKLAAIAK 227


>gi|74310830|ref|YP_309249.1| DNA polymerase III subunit epsilon [Shigella sonnei Ss046]
 gi|82542808|ref|YP_406755.1| DNA polymerase III subunit epsilon [Shigella boydii Sb227]
 gi|157156660|ref|YP_001461381.1| DNA polymerase III subunit epsilon [Escherichia coli E24377A]
 gi|157159676|ref|YP_001456994.1| DNA polymerase III subunit epsilon [Escherichia coli HS]
 gi|187734104|ref|YP_001879012.1| DNA polymerase III subunit epsilon [Shigella boydii CDC 3083-94]
 gi|191167032|ref|ZP_03028854.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A]
 gi|193067693|ref|ZP_03048660.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019]
 gi|194427534|ref|ZP_03060082.1| DNA polymerase III, epsilon subunit [Escherichia coli B171]
 gi|194432694|ref|ZP_03064979.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012]
 gi|209917402|ref|YP_002291486.1| DNA polymerase III subunit epsilon [Escherichia coli SE11]
 gi|218552790|ref|YP_002385703.1| DNA polymerase III subunit epsilon [Escherichia coli IAI1]
 gi|218693677|ref|YP_002401344.1| DNA polymerase III subunit epsilon [Escherichia coli 55989]
 gi|260842441|ref|YP_003220219.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2
           str. 12009]
 gi|260853420|ref|YP_003227311.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O26:H11
           str. 11368]
 gi|260866358|ref|YP_003232760.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O111:H-
           str. 11128]
 gi|293418309|ref|ZP_06660744.1| DNA polymerase III [Escherichia coli B088]
 gi|332281343|ref|ZP_08393756.1| DNA polymerase III epsilon subunit [Shigella sp. D9]
 gi|73854307|gb|AAZ87014.1| DNA polymerase III epsilon subunit [Shigella sonnei Ss046]
 gi|81244219|gb|ABB64927.1| DNA polymerase III epsilon subunit [Shigella boydii Sb227]
 gi|157065356|gb|ABV04611.1| DNA polymerase III, epsilon subunit [Escherichia coli HS]
 gi|157078690|gb|ABV18398.1| DNA polymerase III, epsilon subunit [Escherichia coli E24377A]
 gi|187431096|gb|ACD10370.1| DNA polymerase III, epsilon subunit [Shigella boydii CDC 3083-94]
 gi|190902925|gb|EDV62652.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A]
 gi|192959105|gb|EDV89541.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019]
 gi|194414304|gb|EDX30578.1| DNA polymerase III, epsilon subunit [Escherichia coli B171]
 gi|194418956|gb|EDX35040.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012]
 gi|209910661|dbj|BAG75735.1| DNA polymerase III epsilon subunit [Escherichia coli SE11]
 gi|218350409|emb|CAU96094.1| DNA polymerase III epsilon subunit [Escherichia coli 55989]
 gi|218359558|emb|CAQ97098.1| DNA polymerase III epsilon subunit [Escherichia coli IAI1]
 gi|257752069|dbj|BAI23571.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O26:H11
           str. 11368]
 gi|257757588|dbj|BAI29085.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2
           str. 12009]
 gi|257762714|dbj|BAI34209.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O111:H-
           str. 11128]
 gi|291324837|gb|EFE64252.1| DNA polymerase III [Escherichia coli B088]
 gi|320186397|gb|EFW61129.1| DNA polymerase III epsilon subunit [Shigella flexneri CDC 796-83]
 gi|320201190|gb|EFW75773.1| DNA polymerase III epsilon subunit [Escherichia coli EC4100B]
 gi|323160256|gb|EFZ46213.1| DNA polymerase III, epsilon subunit [Escherichia coli E128010]
 gi|323165914|gb|EFZ51696.1| DNA polymerase III, epsilon subunit [Shigella sonnei 53G]
 gi|323171002|gb|EFZ56651.1| DNA polymerase III, epsilon subunit [Escherichia coli LT-68]
 gi|323176527|gb|EFZ62119.1| DNA polymerase III, epsilon subunit [Escherichia coli 1180]
 gi|323181627|gb|EFZ67042.1| DNA polymerase III, epsilon subunit [Escherichia coli 1357]
 gi|324115459|gb|EGC09401.1| DNA polymerase III [Escherichia coli E1167]
 gi|332093741|gb|EGI98796.1| DNA polymerase III, epsilon subunit [Shigella boydii 3594-74]
 gi|332095033|gb|EGJ00068.1| DNA polymerase III, epsilon subunit [Shigella boydii 5216-82]
 gi|332097572|gb|EGJ02551.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 155-74]
 gi|332103695|gb|EGJ07041.1| DNA polymerase III epsilon subunit [Shigella sp. D9]
          Length = 243

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+  +  +   G + +
Sbjct: 182 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVEKKGGSCL 240

Query: 237 W 237
           W
Sbjct: 241 W 241


>gi|323938758|gb|EGB35004.1| DNA polymerase III [Escherichia coli E1520]
          Length = 246

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 136/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIG VE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGGVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+     +Q  G + +
Sbjct: 185 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 W 237
           W
Sbjct: 244 W 244


>gi|238893208|ref|YP_002917942.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238545524|dbj|BAH61875.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 246

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/243 (37%), Positives = 137/243 (56%), Gaps = 21/243 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++N+       
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNASFDIGFMDYEFSKLNRGIGKTET 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234
            + F  +    +   E   ++ V   S L+         + EEL  H+     +Q  G +
Sbjct: 187 SMAFSMEGESQQQAGEMGIQRVVRAGSQLR-----VVYASDEELANHESRLDLVQKKGGS 241

Query: 235 AIW 237
            +W
Sbjct: 242 CLW 244


>gi|167856497|ref|ZP_02479211.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755]
 gi|167852377|gb|EDS23677.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755]
          Length = 256

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/262 (36%), Positives = 149/262 (56%), Gaps = 31/262 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M ++  +R++V D ETTG++          IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSKQQILRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKP-PREV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+++HGIT+E L DKP+F+ I  EF +F   + AE I HNA FDVGFI+ E   +  
Sbjct: 60  EAEAMQVHGITNEMLADKPAFAEIADEFIEFI--KGAELIIHNAPFDVGFIDHEFSFLPN 117

Query: 116 DPLDPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P   ++   + D+L +AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPEKVAQMCTVTDSLQLARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNE-------DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            MM GG     G   +E       ++ ++       N+ +L  D        ++EL EH 
Sbjct: 178 -MMTGGQIALIGEDEHEQAKTSSVEQVYQPLNIDTSNLIVLAPD--------EKELAEHL 228

Query: 226 KTIQTLGK----NAIWDRYISS 243
           K ++ + K    N +W R +++
Sbjct: 229 KYLELINKKSKGNCLWTRELAT 250


>gi|193063208|ref|ZP_03044299.1| DNA polymerase III, epsilon subunit [Escherichia coli E22]
 gi|256020181|ref|ZP_05434046.1| DNA polymerase III subunit epsilon [Shigella sp. D9]
 gi|300819828|ref|ZP_07100014.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1]
 gi|300823399|ref|ZP_07103529.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7]
 gi|300926565|ref|ZP_07142351.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1]
 gi|301326098|ref|ZP_07219494.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1]
 gi|307314695|ref|ZP_07594293.1| DNA polymerase III, epsilon subunit [Escherichia coli W]
 gi|309797929|ref|ZP_07692309.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7]
 gi|331666456|ref|ZP_08367336.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271]
 gi|331675873|ref|ZP_08376590.1| DNA polymerase III, epsilon subunit [Escherichia coli H591]
 gi|192931116|gb|EDV83719.1| DNA polymerase III, epsilon subunit [Escherichia coli E22]
 gi|300417423|gb|EFK00734.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1]
 gi|300524017|gb|EFK45086.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7]
 gi|300527586|gb|EFK48648.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1]
 gi|300847158|gb|EFK74918.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1]
 gi|306905814|gb|EFN36339.1| DNA polymerase III, epsilon subunit [Escherichia coli W]
 gi|308118469|gb|EFO55731.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7]
 gi|315059428|gb|ADT73755.1| DNA polymerase III, epsilon subunit [Escherichia coli W]
 gi|320173695|gb|EFW48884.1| DNA polymerase III epsilon subunit [Shigella dysenteriae CDC
           74-1112]
 gi|320179852|gb|EFW54798.1| DNA polymerase III epsilon subunit [Shigella boydii ATCC 9905]
 gi|323380013|gb|ADX52281.1| DNA polymerase III, epsilon subunit [Escherichia coli KO11]
 gi|323945583|gb|EGB41633.1| DNA polymerase III [Escherichia coli H120]
 gi|324020673|gb|EGB89892.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 117-3]
 gi|331066301|gb|EGI38179.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271]
 gi|331076433|gb|EGI47710.1| DNA polymerase III, epsilon subunit [Escherichia coli H591]
          Length = 246

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+  +  +   G + +
Sbjct: 185 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVEKKGGSCL 243

Query: 237 W 237
           W
Sbjct: 244 W 244


>gi|33151469|ref|NP_872822.1| DNA polymerase III epsilon chain [Haemophilus ducreyi 35000HP]
 gi|33147689|gb|AAP95211.1| DNA polymerase III epsilon chain [Haemophilus ducreyi 35000HP]
          Length = 256

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/249 (37%), Positives = 141/249 (56%), Gaps = 27/249 (10%)

Query: 7   MRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R++V D ETTG++          IIEIGAVEL++   T RTF V++ P  R+   EA+K
Sbjct: 7   IRQVVLDTETTGMNFNGPPQIGHNIIEIGAVELINRRLTGRTFHVYIKPP-REVEEEAIK 65

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---L 118
           +HGIT+ FL+DKP+F+ I  EF  F   Q AE I HNA FDV FI+ E   +   P    
Sbjct: 66  VHGITNAFLQDKPTFAEIAHEFLAFI--QGAELIIHNAPFDVAFIDQEFSSLVNPPSKTA 123

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +   + DTL +AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++ MM GG
Sbjct: 124 EMCTVTDTLQMARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGG 182

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK-----PLFTRITKEELDEHDKTIQTLGK 233
                   T E+    ++++     SL  ++       +  ++++EE   H + +  L K
Sbjct: 183 ---QLALLTEEEHSHTQQQR---ETSLAVKEHFDTSGLIVLQLSQEECQAHQEYLALLDK 236

Query: 234 ----NAIWD 238
               N +W+
Sbjct: 237 KSKGNCLWN 245


>gi|296158207|ref|ZP_06841039.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
 gi|295891543|gb|EFG71329.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
          Length = 244

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 78/174 (44%), Positives = 112/174 (64%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRI+E+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F  I  +F DF   Q A+ I HNA FD+GF++ E   +   P+      I
Sbjct: 60  TTEFLSDKPKFGEIADQFRDFI--QGADLIIHNAPFDIGFLDVEFALLGLPPVSTYCGEI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G
Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171


>gi|323157950|gb|EFZ44052.1| DNA polymerase III, epsilon subunit [Escherichia coli EPECa14]
          Length = 246

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/236 (37%), Positives = 135/236 (57%), Gaps = 14/236 (5%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+  +  + K A
Sbjct: 182 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVEKKA 236


>gi|288937007|ref|YP_003441066.1| DNA polymerase III subunit epsilon [Klebsiella variicola At-22]
 gi|288891716|gb|ADC60034.1| DNA polymerase III, epsilon subunit [Klebsiella variicola At-22]
          Length = 246

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/243 (37%), Positives = 137/243 (56%), Gaps = 21/243 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++N+       
Sbjct: 69  HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNASFDIGFMDYEFGKLNRGIGKTET 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234
            + F  +    +   E   ++ V   S L+         + EEL  H+     +Q  G +
Sbjct: 187 SMAFSMEGESQQQAGEMGIQRVVRAASQLR-----VVYASDEELVNHESRLDLVQKKGGS 241

Query: 235 AIW 237
            +W
Sbjct: 242 CLW 244


>gi|188494951|ref|ZP_03002221.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638]
 gi|194438247|ref|ZP_03070339.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1]
 gi|254160329|ref|YP_003043437.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606]
 gi|312970313|ref|ZP_07784494.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70]
 gi|188490150|gb|EDU65253.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638]
 gi|194422911|gb|EDX38906.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1]
 gi|242376045|emb|CAQ30730.1| DNA polymerase III, epsilon subunit, subunit of DNA polymerase III,
           core enzyme and DNA polymerase III, holoenzyme
           [Escherichia coli BL21(DE3)]
 gi|253972230|gb|ACT37901.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606]
 gi|253976439|gb|ACT42109.1| DNA polymerase III subunit epsilon [Escherichia coli BL21(DE3)]
 gi|309700417|emb|CBI99706.1| DNA polymerase III epsilon subunit [Escherichia coli ETEC H10407]
 gi|310336962|gb|EFQ02100.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70]
          Length = 243

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T +EL  H+     +Q  G + +
Sbjct: 182 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDDELAAHEARLDLVQKKGGSCL 240

Query: 237 W 237
           W
Sbjct: 241 W 241


>gi|170695448|ref|ZP_02886593.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
 gi|170139639|gb|EDT07822.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
          Length = 247

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 78/174 (44%), Positives = 113/174 (64%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRI+E+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ I  +  DF   Q A+ I HNA FD+GF++AE   +   P+      I
Sbjct: 60  TTEFLSDKPKFADIADQIRDFI--QGADLIIHNAPFDIGFLDAEFALLGLPPVSTYCGEI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G
Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171


>gi|168238647|ref|ZP_02663705.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194736138|ref|YP_002113281.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|204927010|ref|ZP_03218212.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194711640|gb|ACF90861.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288607|gb|EDY27984.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204323675|gb|EDZ08870.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322614544|gb|EFY11473.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620062|gb|EFY16934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623357|gb|EFY20196.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629345|gb|EFY26124.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632065|gb|EFY28819.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637197|gb|EFY33899.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640310|gb|EFY36970.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645923|gb|EFY42443.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652378|gb|EFY48732.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652582|gb|EFY48932.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660392|gb|EFY56628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664545|gb|EFY60738.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669402|gb|EFY65552.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670948|gb|EFY67081.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678813|gb|EFY74868.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681842|gb|EFY77867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687968|gb|EFY83934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194322|gb|EFZ79517.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197738|gb|EFZ82870.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203466|gb|EFZ88491.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206789|gb|EFZ91742.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213392|gb|EFZ98193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214685|gb|EFZ99436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221462|gb|EGA05878.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226220|gb|EGA10436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229992|gb|EGA14112.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233731|gb|EGA17820.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238575|gb|EGA22633.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244263|gb|EGA28272.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246424|gb|EGA30407.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252193|gb|EGA36046.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258046|gb|EGA41725.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323265129|gb|EGA48628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272692|gb|EGA56099.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 246

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/243 (37%), Positives = 138/243 (56%), Gaps = 21/243 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234
            + F  +    R   EE  ++ V   S   R + +F   + EEL  H+     +Q  G +
Sbjct: 187 SMTFAMEGETQRQQGEETIQRIVRQAS---RLRVVFA--SDEELAAHESRLDLVQKKGGS 241

Query: 235 AIW 237
            +W
Sbjct: 242 CLW 244


>gi|156935271|ref|YP_001439187.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533525|gb|ABU78351.1| hypothetical protein ESA_03124 [Cronobacter sakazakii ATCC BAA-894]
          Length = 243

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/243 (37%), Positives = 138/243 (56%), Gaps = 21/243 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFMV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL +KP F  +  +F D+   + AE + HNA FD+GF++ E   +N+  P   +
Sbjct: 66  HGISDEFLMNKPVFGDVVDDFLDYI--RGAELVIHNASFDIGFMDYEFGMLNRGIPKTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234
            I F  + +  +   +   ++ V   S LK       R   EEL  H+     +Q  G +
Sbjct: 184 SIAFAMEGDGQQQQGDTGIQRVVRQASRLK-----VVRACDEELAAHESRLDLVQKKGGS 238

Query: 235 AIW 237
            +W
Sbjct: 239 CLW 241


>gi|170021437|ref|YP_001726391.1| DNA polymerase III subunit epsilon [Escherichia coli ATCC 8739]
 gi|253774763|ref|YP_003037594.1| DNA polymerase III subunit epsilon [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|297518674|ref|ZP_06937060.1| DNA polymerase III subunit epsilon [Escherichia coli OP50]
 gi|300905642|ref|ZP_07123388.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1]
 gi|300919145|ref|ZP_07135678.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1]
 gi|300927906|ref|ZP_07143466.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1]
 gi|301305771|ref|ZP_07211857.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1]
 gi|169756365|gb|ACA79064.1| DNA polymerase III, epsilon subunit [Escherichia coli ATCC 8739]
 gi|253325807|gb|ACT30409.1| DNA polymerase III, epsilon subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|300402534|gb|EFJ86072.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1]
 gi|300413743|gb|EFJ97053.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1]
 gi|300464061|gb|EFK27554.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1]
 gi|300838946|gb|EFK66706.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1]
 gi|315253528|gb|EFU33496.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 85-1]
 gi|323963578|gb|EGB59135.1| DNA polymerase III [Escherichia coli H489]
 gi|323972507|gb|EGB67713.1| DNA polymerase III [Escherichia coli TA007]
          Length = 246

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T +EL  H+     +Q  G + +
Sbjct: 185 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDDELAAHEARLDLVQKKGGSCL 243

Query: 237 W 237
           W
Sbjct: 244 W 244


>gi|15601971|ref|NP_245043.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|31563219|sp|Q9CPE0|DPO3E_PASMU RecName: Full=DNA polymerase III subunit epsilon
 gi|12720318|gb|AAK02190.1| DnaQ [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 253

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 96/253 (37%), Positives = 144/253 (56%), Gaps = 31/253 (12%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ PN R   P+A+K+
Sbjct: 9   RQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPN-RPVDPDAIKV 67

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPL 118
           HGITDE L DKP F+ +  +F D+   Q AE + HNA FDVGF++ E ++    IN D +
Sbjct: 68  HGITDEMLADKPMFNEVAQQFIDYI--QGAELLIHNAPFDVGFMDYEFKKLNLNINTDAI 125

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               + DTL +AR+ +P  RN L++LC R GI  S R+ HGALLD+ +L+DVY+ M  G 
Sbjct: 126 --CMVTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMTGGQ 183

Query: 179 SQINFGFKTNEDRF----FKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTLGK 233
           + +   F  NE        +E+ ++    S  LKR +P       +EL  H   +  L K
Sbjct: 184 TSL---FDENEPEIAVVAVQEQIQSAVAFSQDLKRLQP-----NADELQAHLDYLLLLNK 235

Query: 234 ----NAIWDRYIS 242
               N +W++ ++
Sbjct: 236 KSKGNCLWEKRLA 248


>gi|262044050|ref|ZP_06017130.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330005755|ref|ZP_08305367.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3]
 gi|259038622|gb|EEW39813.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328536123|gb|EGF62511.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3]
          Length = 246

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 90/243 (37%), Positives = 137/243 (56%), Gaps = 21/243 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++N+       
Sbjct: 69  HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNASFDIGFMDYEFSKLNRGIGKTET 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234
            + F  +    +   E   ++ V   S L+         + EEL  H+     +Q  G +
Sbjct: 187 SMAFSMEGESQQQAGEMGIQRVVRAGSQLR-----VVYASDEELANHESRLDLVQKKGGS 241

Query: 235 AIW 237
            +W
Sbjct: 242 CLW 244


>gi|152968805|ref|YP_001333914.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953654|gb|ABR75684.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 243

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 90/243 (37%), Positives = 137/243 (56%), Gaps = 21/243 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++N+       
Sbjct: 66  HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNASFDIGFMDYEFSKLNRGIGKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234
            + F  +    +   E   ++ V   S L+         + EEL  H+     +Q  G +
Sbjct: 184 SMAFSMEGESQQQAGEMGIQRVVRAGSQLR-----VVYASDEELANHESRLDLVQKKGGS 238

Query: 235 AIW 237
            +W
Sbjct: 239 CLW 241


>gi|323259856|gb|EGA43487.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
          Length = 243

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/243 (37%), Positives = 138/243 (56%), Gaps = 21/243 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234
            + F  +    R   EE  ++ V   S   R + +F   + EEL  H+     +Q  G +
Sbjct: 184 SMTFAMEGETQRQQGEETIQRIVRQAS---RLRVVFA--SDEELAAHESRLDLVQKKGGS 238

Query: 235 AIW 237
            +W
Sbjct: 239 CLW 241


>gi|327254934|gb|EGE66544.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_7v]
          Length = 243

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF ++   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMNYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+     +Q  G + +
Sbjct: 182 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 W 237
           W
Sbjct: 241 W 241


>gi|296101380|ref|YP_003611526.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055839|gb|ADF60577.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 243

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 138/241 (57%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++ +D      
Sbjct: 66  HGIADEFLLDKPTFAEVADEFLDYI--KGAELVIHNASFDIGFMDYEFSKLQRDIPKTNT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
            + F  + NE +  + E      +    R + +    + EEL  H+     +Q  G + +
Sbjct: 184 SMKFSME-NESQQTQGEAGIQRVVRQASRLRVVLA--SDEELLNHESRLDLVQKKGGSCM 240

Query: 237 W 237
           W
Sbjct: 241 W 241


>gi|206577790|ref|YP_002240302.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342]
 gi|290509928|ref|ZP_06549298.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55]
 gi|206566848|gb|ACI08624.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342]
 gi|289776644|gb|EFD84642.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55]
          Length = 243

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 90/243 (37%), Positives = 137/243 (56%), Gaps = 21/243 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++N+       
Sbjct: 66  HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNASFDIGFMDYEFGKLNRGIGKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234
            + F  +    +   E   ++ V   S L+         + EEL  H+     +Q  G +
Sbjct: 184 SMAFSMEGESQQQAGEMGIQRVVRAASQLR-----VVYASDEELVNHESRLDLVQKKGGS 238

Query: 235 AIW 237
            +W
Sbjct: 239 CLW 241


>gi|323963754|gb|EGB59256.1| DNA polymerase III [Escherichia coli M863]
          Length = 246

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF ++   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMNYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+     +Q  G + +
Sbjct: 185 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 W 237
           W
Sbjct: 244 W 244


>gi|238921062|ref|YP_002934577.1| DNA polymerase III subunit epsilon [Edwardsiella ictaluri 93-146]
 gi|238870631|gb|ACR70342.1| DNA polymerase III, epsilon subunit, putative [Edwardsiella
           ictaluri 93-146]
          Length = 243

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/242 (38%), Positives = 139/242 (57%), Gaps = 19/242 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPD-RLVDPEAFTV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+D+FL DKPSF+ +  EF  F   + AE + HNA FD+GF++ E  ++ +D P   +
Sbjct: 66  HGISDDFLLDKPSFAEVADEFLAFI--RGAELVIHNAPFDIGFMDYEFAKLGRDLPKTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M   G 
Sbjct: 124 FCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMT--GG 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE-ELDEHDK---TIQTLGKNA 235
           Q    F ++ D   + +   +  +  ++  K L      E EL  H++    +Q  G + 
Sbjct: 182 QTLLAFSSDGDGASQSQASEIRRV--VRGAKGLRVVYASEVELAAHEQRLDLVQKKGDSC 239

Query: 236 IW 237
           +W
Sbjct: 240 LW 241


>gi|323975918|gb|EGB71013.1| DNA polymerase III [Escherichia coli TW10509]
          Length = 243

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF ++   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMNYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+     +Q  G + +
Sbjct: 182 QTSMAFAMEGETQQQQGETTIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 W 237
           W
Sbjct: 241 W 241


>gi|297538708|ref|YP_003674477.1| DNA polymerase III subunit epsilon [Methylotenera sp. 301]
 gi|297258055|gb|ADI29900.1| DNA polymerase III, epsilon subunit [Methylotenera sp. 301]
          Length = 235

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/240 (37%), Positives = 140/240 (58%), Gaps = 18/240 (7%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  ++  R+IE+ AVE+++   T + F  +L P+ R+    A ++HGI
Sbjct: 1   MRQIFLDTETTGLYHAQGHRVIEVAAVEVINRRLTKQHFHYYLNPD-REIDQGAQEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           + EFL+DKP F+ I +E   F    ++E I HNA FDVGF+N E   I + P++   ++I
Sbjct: 60  SLEFLQDKPHFADIANELIAFI--ADSELIMHNAPFDVGFLNREFGLIEQKPVEAITAKI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL IA+   P  RN L++LCK YGI  S R+ HGALLD+ LL+DVY+ M  G   +  
Sbjct: 118 TDTLKIAKEMRPGQRNSLDALCKHYGIDNSKRTLHGALLDAELLADVYMAMTRGQDSLMM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE-ELDEHDKTIQTLGK--NAIWDRY 240
                     K ++K    I  +K  +P+  ++  + E+  HD+ I +L K  + +W ++
Sbjct: 178 ELD-------KPQQKNSDAIQEIK--QPVLVKLANQAEISAHDEYIASLAKSSDCLWAKF 228


>gi|309782421|ref|ZP_07677145.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA]
 gi|308918758|gb|EFP64431.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA]
          Length = 242

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 80/174 (45%), Positives = 112/174 (64%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL++   DR+IEIG VE+++   T R    ++ P  R+    A+ +HGI
Sbjct: 1   MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T+EF+ DKP F+ I +E  D+   Q AE I HNA FD+GF++ E QR+   P     S  
Sbjct: 60  TNEFVADKPKFAEIVNEIRDYV--QGAEAIIHNAAFDLGFLDMEFQRLGLPPFREHLSGH 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL  AR+  P  RN L++LC R GI+ +HR+ HGALLD+ LL++VY+ M  G
Sbjct: 118 IDTLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRG 171


>gi|68248745|ref|YP_247857.1| DNA polymerase III subunit epsilon [Haemophilus influenzae
           86-028NP]
 gi|68056944|gb|AAX87197.1| DNA polymerase III, epsilon chain [Haemophilus influenzae 86-028NP]
          Length = 255

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/259 (37%), Positives = 148/259 (57%), Gaps = 28/259 (10%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R   P+A
Sbjct: 3   NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
           +K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N +   
Sbjct: 62  IKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119

Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +   RN+L++LC+R GI  S R+ HGALLD+ +L+DVY+ MM G
Sbjct: 120 DDICLVTDTLQMARQMYLGKRNNLDALCERLGIDNSKRTLHGALLDAEILADVYL-MMTG 178

Query: 178 GSQINFGFKTNEDRFF-------KEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQ 229
           G    F  ++ E            EE K+  + S  LK  +P     T +EL  H + ++
Sbjct: 179 GQTNLFDEESVESEVIHVMQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLEFLK 233

Query: 230 TL----GKNAIWDRYISSN 244
            +    G N +W++   +N
Sbjct: 234 MMNKKSGNNCLWEKRFGNN 252


>gi|241663345|ref|YP_002981705.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12D]
 gi|240865372|gb|ACS63033.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12D]
          Length = 242

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 80/174 (45%), Positives = 112/174 (64%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL++   DR+IEIG VE+++   T R    ++ P  R+    A+ +HGI
Sbjct: 1   MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T+EF+ DKP F+ I +E  D+   Q AE I HNA FD+GF++ E QR+   P     S  
Sbjct: 60  TNEFVADKPKFAEIVNEIRDYV--QGAEAIIHNAAFDLGFLDMEFQRLGLPPFREHLSGH 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL  AR+  P  RN L++LC R GI+ +HR+ HGALLD+ LL++VY+ M  G
Sbjct: 118 IDTLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRG 171


>gi|310766705|gb|ADP11655.1| DNA polymerase III subunit epsilon [Erwinia sp. Ejp617]
          Length = 252

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 93/245 (37%), Positives = 142/245 (57%), Gaps = 19/245 (7%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F V+L P+ R   PEA
Sbjct: 5   NTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLIDPEA 63

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN---AELQRINKD 116
             +HGI DEFL DKP+F+ I  +F  + N   AE + HNA FD+GF++   A+LQR    
Sbjct: 64  FGVHGIADEFLLDKPTFAQIADDFLAYIN--GAELVIHNASFDIGFMDYEFAKLQRGIAK 121

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLDS +L++V++ M  
Sbjct: 122 TETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFLTMT- 180

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTL---G 232
            G Q +  F    +R  +++ +T+  I+  +    L   R +++EL  H+  +  +   G
Sbjct: 181 -GGQTSLAFSMEGEREKQQDGETIHRIA--RPSSGLRVVRASEQELMAHEARLDLVEKKG 237

Query: 233 KNAIW 237
            + +W
Sbjct: 238 GSCLW 242


>gi|238755084|ref|ZP_04616431.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473]
 gi|238706644|gb|EEP99014.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473]
          Length = 254

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 94/245 (38%), Positives = 141/245 (57%), Gaps = 25/245 (10%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-----NKDP 117
           HGI+DEFL DKP+F+ I  EF +F   + AE + HNA FD+GF+  E + +     N D 
Sbjct: 66  HGISDEFLLDKPTFADIAPEFIEFI--RGAELVIHNATFDIGFMYYEFRMLQQAIPNTDT 123

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +LS+VY+ M  G
Sbjct: 124 F--CTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILSEVYLAMTGG 181

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK--EELDEHDK---TIQTLG 232
            + ++F  + +++     +  +  +I  + R     T I    EELD H +    +Q  G
Sbjct: 182 QTSLSFSMEGDQN-----QSDSAADIQRIVRPTSGLTIIYANDEELDAHHQRLDLVQKKG 236

Query: 233 KNAIW 237
            + +W
Sbjct: 237 GSCLW 241


>gi|56460794|ref|YP_156075.1| DNA polymerase III, epsilon subunit [Idiomarina loihiensis L2TR]
 gi|56179804|gb|AAV82526.1| DNA polymerase III, epsilon subunit [Idiomarina loihiensis L2TR]
          Length = 235

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/240 (37%), Positives = 136/240 (56%), Gaps = 17/240 (7%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTG+D +K  RIIEIG VEL++   T   F V++ P  R    EA+++HGI
Sbjct: 1   MRQVVLDTETTGIDPAKGHRIIEIGCVELINRKLTGNHFHVYINPE-RVVEQEAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122
           T++FL DKP F+ +  +F +F   + ++ + HNA FDVGF++AE  RI        D   
Sbjct: 60  TNDFLTDKPVFAQVVQDFIEFI--KGSQLVIHNAPFDVGFMDAEFSRIRPAVGLTNDFCS 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR   P  RN L++LC+ Y +  S R  HGALLD+ +L+DVY+ M  G + +N
Sbjct: 118 VLDTLQLAREMRPGQRNSLDALCRAYDVDNSARELHGALLDAEILADVYLMMTGGQTALN 177

Query: 183 FG--FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIW 237
                K N+    K E + + N   LK       R T +E   H + +  +   G + +W
Sbjct: 178 LASHGKDNQGGSQKVEHQRITNRPALK-----VLRATADEEALHQERLARVKEEGGHCLW 232


>gi|223041838|ref|ZP_03612026.1| DNA polymerase III subunit epsilon [Actinobacillus minor 202]
 gi|223017331|gb|EEF15754.1| DNA polymerase III subunit epsilon [Actinobacillus minor 202]
          Length = 255

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 97/259 (37%), Positives = 144/259 (55%), Gaps = 33/259 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M+ +   R++V D ETTG++          IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MLEQEIHRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKPSF+ I  EF  F   + AE + HNA FDVGF++ E   +  
Sbjct: 60  EEEAIKVHGITNEFLQDKPSFAEIVDEFVAFI--KGAELVIHNAPFDVGFMDHEFSFLAN 117

Query: 116 DP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P    +   + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCTVTDSLALARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKR--------DKPLFTRITKEELDEH 224
            MM GG QI            +EE    P + LL+            +  +  + EL+ H
Sbjct: 178 -MMTGG-QIAL--------LAEEEHDENPQVDLLEEGPKIAFDTSNSVILKADESELEAH 227

Query: 225 DKTIQTLGK----NAIWDR 239
              ++ L K    N IW +
Sbjct: 228 QLFLKLLYKKSKQNCIWGK 246


>gi|261346344|ref|ZP_05973988.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM
           4541]
 gi|282565658|gb|EFB71193.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM
           4541]
          Length = 253

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 94/244 (38%), Positives = 142/244 (58%), Gaps = 22/244 (9%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS- 121
           HGI+DEFL+DKP F+ I  EF +F   + AE I HNA FD+GF++ E +++N+  + P+ 
Sbjct: 66  HGISDEFLQDKPVFAEIADEFIEFI--RGAELIIHNAPFDIGFMDYEFRKLNRG-IPPTA 122

Query: 122 ---RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               I D+L +AR+  P  RN+L++LC RY I  S R+ HGALLD+ +LSDVY+ M   G
Sbjct: 123 EFCSITDSLVLARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMT--G 180

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTL----GK 233
            Q +  F  + D    ++   +  I       K L+   + +E+ EH+  +  +    GK
Sbjct: 181 GQTSLAFSMDSDSKNIQQANEIQRIQRPASGLKVLYA--SDQEIAEHEARLDIVDKKGGK 238

Query: 234 NAIW 237
             +W
Sbjct: 239 PCLW 242


>gi|331661586|ref|ZP_08362509.1| DNA polymerase III, epsilon subunit [Escherichia coli TA143]
 gi|284919985|emb|CBG33040.1| DNA polymerase III epsilon subunit [Escherichia coli 042]
 gi|331060008|gb|EGI31972.1| DNA polymerase III, epsilon subunit [Escherichia coli TA143]
          Length = 246

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 136/241 (56%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P  R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPE-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF ++   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMNYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  K      T EEL  H+     +Q  G + +
Sbjct: 185 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 W 237
           W
Sbjct: 244 W 244


>gi|312795584|ref|YP_004028506.1| DNA polymerase III, epsilon chain [Burkholderia rhizoxinica HKI
           454]
 gi|312167359|emb|CBW74362.1| DNA polymerase III, epsilon chain (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 247

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 80/174 (45%), Positives = 111/174 (63%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTGL++K  DRIIEIG VE+++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRLLVLDTETTGLNAKGGDRIIEIGCVEIVNRQLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL+DKP F+ I     DF   ++A+ I HNA FD+GF+NAE   +   P       +
Sbjct: 60  TTEFLRDKPKFAEIADALRDFV--KDADIIIHNAPFDIGFLNAEFAMLGLPPFCDHCGEV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL  A+   P  RN L++LC+R+GI+ +HR+ HGALLD+ LL+DVY+ M  G
Sbjct: 118 IDTLVQAKAMFPGKRNSLDALCERFGISNAHRTLHGALLDAELLADVYLAMTRG 171


>gi|242240256|ref|YP_002988437.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech703]
 gi|242132313|gb|ACS86615.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech703]
          Length = 244

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 81/191 (42%), Positives = 125/191 (65%), Gaps = 13/191 (6%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R++V D ETTG++      +  RIIEIGAVE+++   T R + V+L P+ R   PEA ++
Sbjct: 7   RQVVLDTETTGMNRLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYLKPD-RLVDPEAFQI 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL D+P+++ I  EF +F   + AE + HNA FD+GF++ E + +N+D P   +
Sbjct: 66  HGISDEFLIDRPAYADIVDEFIEFI--RGAELVIHNASFDIGFMDYEFRMLNRDIPKTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++ARR  P  RN+L+ LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 124 FCKITDSLAMARRLFPGKRNNLDVLCTRYQIDNSKRTLHGALLDAEILAEVYLAMT--GG 181

Query: 180 QINFGFKTNED 190
           Q +  F ++ +
Sbjct: 182 QTSLAFSSDSE 192


>gi|68172041|ref|ZP_00545326.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998534|gb|EAM85303.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia chaffeensis str. Sapulpa]
          Length = 239

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/234 (39%), Positives = 137/234 (58%), Gaps = 11/234 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R++V D ETTGLD    DR+IEIG VEL+D   T + F  ++ P  R     A K+HGI
Sbjct: 7   VREVVLDTETTGLDPDGGDRVIEIGCVELIDRVFTGKVFHEYINPE-RDIPYYATKIHGI 65

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + LKDKP FS I  +F +F +  N   + HNA FD+ FI  EL RINK      +++D
Sbjct: 66  TIDMLKDKPKFSEIADKFLEFID--NGILVIHNAGFDIKFIKMELDRINKSYNSDFQVVD 123

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR+K P   + L++LC+R+ I++  R  HGALLD+ LL  VY+++M GG Q +  F
Sbjct: 124 TLVLARKKFPGVSSTLDALCRRFNISLQDRKFHGALLDATLLGKVYVQLM-GGLQRSLEF 182

Query: 186 KTNEDRFFKEE-KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
             N +        K   N+ +    +P    +++EE+ +H   ++ + KN IW+
Sbjct: 183 SYNNNVSSASNIDKRCENLCI----EPRIYEVSEEEIKKHKMLLEKI-KNPIWN 231


>gi|209364170|ref|YP_001425094.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway
           5J108-111]
 gi|212213173|ref|YP_002304109.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212]
 gi|212218153|ref|YP_002304940.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154]
 gi|215918940|ref|NP_819360.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493]
 gi|206583825|gb|AAO89874.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493]
 gi|207082103|gb|ABS77173.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway
           5J108-111]
 gi|212011583|gb|ACJ18964.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212]
 gi|212012415|gb|ACJ19795.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154]
          Length = 236

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 96/241 (39%), Positives = 136/241 (56%), Gaps = 16/241 (6%)

Query: 5   NKMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N MR+IV D ETTGL   +  RIIEIGA+E+++   T      ++ P  R    +A+++H
Sbjct: 3   NLMRQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPE-RSIERDAIEIH 61

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDP 120
           GITD FL DKP F  I +E   F   + AE I HNA FDVGF+N EL+      K     
Sbjct: 62  GITDSFLIDKPLFKDIATELISFL--KGAELIIHNAPFDVGFLNHELKLTGQSFKTLTHY 119

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +++DTL+IAR+KHP   N+L++LC+RY +  S+R  HGALLD+ LL+ VY+ +M GG  
Sbjct: 120 CQVLDTLTIARQKHPGQHNNLDALCRRYHVDNSNRDYHGALLDAELLAQVYL-LMTGGQT 178

Query: 181 INFGFKTNEDRFFKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTLGKNA--IW 237
           + F     E + F    ++V    L   RD     R    E + H   +Q L +N   +W
Sbjct: 179 VLF-----EQQGFAVASRSVSVRPLGTDRDSLSVIRANAAETEAHRAFLQLLTENGLCLW 233

Query: 238 D 238
           +
Sbjct: 234 N 234


>gi|238794443|ref|ZP_04638053.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909]
 gi|238726238|gb|EEQ17782.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909]
          Length = 259

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 82/192 (42%), Positives = 124/192 (64%), Gaps = 11/192 (5%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 12  RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+F+ I  EF DF   + AE + HNA FD+GF++ E + + +D P   +
Sbjct: 71  HGISDEFLADKPTFADITPEFLDFI--RGAELVIHNAAFDIGFMDYEFRMLQQDIPKTET 128

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G +
Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188

Query: 180 QINFGFKTNEDR 191
            ++F  + ++ +
Sbjct: 189 SLSFSMEGDQSQ 200


>gi|219871037|ref|YP_002475412.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165]
 gi|219691241|gb|ACL32464.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165]
          Length = 256

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 95/262 (36%), Positives = 148/262 (56%), Gaps = 31/262 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG++          IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQQILRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+++HGIT+E L DKP+F+ I  EF +F   + AE I HNA FDVGFI+ E   +  
Sbjct: 60  DAEAMQVHGITNEMLADKPAFAEIADEFIEFI--KGAELIIHNAPFDVGFIDHEFSFLPN 117

Query: 116 DPLDPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P   ++   + D+L +AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPEKVAQMCTVTDSLQLARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNE-------DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225
            MM GG     G   +E       ++ ++       N+ +L  D        ++EL EH 
Sbjct: 178 -MMTGGQIALIGEDEHEQVKTSSAEQVYQPLTIDTSNLIVLAPD--------EKELAEHL 228

Query: 226 KTIQTLGK----NAIWDRYISS 243
           K ++ + K    N +W R +++
Sbjct: 229 KYLELINKKSKGNCLWTRELAT 250


>gi|295698439|ref|YP_003603094.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola
           USDA]
 gi|291157346|gb|ADD79791.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola
           USDA]
          Length = 249

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 90/186 (48%), Positives = 116/186 (62%), Gaps = 13/186 (6%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           RKI+ D ETTG+ S     +   IIEIGAVE+++   T   F V++ P  R   P+A ++
Sbjct: 7   RKIILDTETTGMSSSGHPYEGHNIIEIGAVEMINRELTGNLFHVYINPK-RSVDPKAFEI 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           H I+D FLKDKP+FS I  +F DF   +N+E I HNA FDVGFIN EL RI         
Sbjct: 66  HKISDNFLKDKPTFSEIVDDFVDFI--RNSELIIHNASFDVGFINHELSRIEYSFCSIKK 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             RI DTL IAR   P  +N L++LC RY I  S RS H A+LD+ +LS++Y K+M GG 
Sbjct: 124 ICRITDTLKIARSLFPGKKNSLDALCDRYHIDRSKRSVHSAILDAKILSEIY-KLMTGG- 181

Query: 180 QINFGF 185
           QI+F F
Sbjct: 182 QISFNF 187


>gi|296135837|ref|YP_003643079.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
 gi|295795959|gb|ADG30749.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
          Length = 239

 Score =  154 bits (390), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 80/192 (41%), Positives = 123/192 (64%), Gaps = 14/192 (7%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL+ +  DRIIE+  VEL +   T + +  +L P+ R + P+ALK+HG+T
Sbjct: 3   RQIVLDTETTGLNPASGDRIIEVAGVELFNRRLTGKHYHAYLNPD-RASHPDALKVHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD------PLDP 120
           +EFL DKP F  I  +  +F   ++AE I HNA FD  F++AEL+R+N+       PL  
Sbjct: 62  EEFLSDKPRFEQIADDLLEFV--RDAEVIIHNAPFDCAFLDAELERLNRPAFRQHVPL-- 117

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             + DTL++A+ + P   N+L++LCKR+GI  +HR+ HGALLD+ LL++VY+ +  G   
Sbjct: 118 --VTDTLAMAKLQFPGKFNNLDALCKRFGIDNTHRTLHGALLDAELLAEVYLSLTRGQES 175

Query: 181 INFGFKTNEDRF 192
           +    +T + + 
Sbjct: 176 LVIDLETPQQQM 187


>gi|311280820|ref|YP_003943051.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae SCF1]
 gi|308750015|gb|ADO49767.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae SCF1]
          Length = 246

 Score =  154 bits (390), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 87/243 (35%), Positives = 137/243 (56%), Gaps = 21/243 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFNV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF ++   + AE + HNA FD+GF++ E  ++N+       
Sbjct: 69  HGIADEFLLDKPTFADVCDEFLEYI--RGAELVIHNASFDIGFMDYEFSKLNRGIAKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234
            + F  +    +   E   ++ V   S L+         + EEL  H+     +Q  G +
Sbjct: 187 SMAFAMEGEAQQTQGEAGIQRVVRAASKLR-----VVLASDEELMAHESRLDLVQKKGGS 241

Query: 235 AIW 237
            +W
Sbjct: 242 CLW 244


>gi|22126970|ref|NP_670393.1| DNA polymerase III subunit epsilon [Yersinia pestis KIM 10]
 gi|45442535|ref|NP_994074.1| DNA polymerase III subunit epsilon [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51597279|ref|YP_071470.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP
           32953]
 gi|108806557|ref|YP_650473.1| DNA polymerase III subunit epsilon [Yersinia pestis Antiqua]
 gi|108813076|ref|YP_648843.1| DNA polymerase III subunit epsilon [Yersinia pestis Nepal516]
 gi|145598912|ref|YP_001162988.1| DNA polymerase III subunit epsilon [Yersinia pestis Pestoides F]
 gi|149366915|ref|ZP_01888949.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125]
 gi|153948473|ref|YP_001400036.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP
           31758]
 gi|162419464|ref|YP_001607083.1| DNA polymerase III subunit epsilon [Yersinia pestis Angola]
 gi|165924368|ref|ZP_02220200.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938341|ref|ZP_02226899.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011939|ref|ZP_02232837.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166211805|ref|ZP_02237840.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399939|ref|ZP_02305457.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419869|ref|ZP_02311622.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424264|ref|ZP_02316017.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170023355|ref|YP_001719860.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis
           YPIII]
 gi|186896384|ref|YP_001873496.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928251|ref|YP_002346126.1| DNA polymerase III subunit epsilon [Yersinia pestis CO92]
 gi|229841013|ref|ZP_04461172.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843118|ref|ZP_04463264.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229895464|ref|ZP_04510636.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A]
 gi|229903519|ref|ZP_04518632.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516]
 gi|270487300|ref|ZP_06204374.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27]
 gi|294503098|ref|YP_003567160.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003]
 gi|21960013|gb|AAM86644.1|AE013910_6 DNA polymerase III, epsilon subunit [Yersinia pestis KIM 10]
 gi|45437400|gb|AAS62951.1| DNA polymerase III, epsilon chain [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51590561|emb|CAH22202.1| DNA polymerase III, epsilon chain [Yersinia pseudotuberculosis IP
           32953]
 gi|108776724|gb|ABG19243.1| DNA polymerase III, epsilon subunit [Yersinia pestis Nepal516]
 gi|108778470|gb|ABG12528.1| DNA polymerase III, epsilon subunit [Yersinia pestis Antiqua]
 gi|115346862|emb|CAL19748.1| DNA polymerase III, epsilon chain [Yersinia pestis CO92]
 gi|145210608|gb|ABP40015.1| DNA polymerase III, epsilon subunit [Yersinia pestis Pestoides F]
 gi|149291289|gb|EDM41364.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125]
 gi|152959968|gb|ABS47429.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|162352279|gb|ABX86227.1| DNA polymerase III, epsilon subunit [Yersinia pestis Angola]
 gi|165913719|gb|EDR32338.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923428|gb|EDR40560.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989106|gb|EDR41407.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207576|gb|EDR52056.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962610|gb|EDR58631.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050647|gb|EDR62055.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057113|gb|EDR66876.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749889|gb|ACA67407.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis
           YPIII]
 gi|186699410|gb|ACC90039.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679289|gb|EEO75392.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516]
 gi|229689465|gb|EEO81526.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697379|gb|EEO87426.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701619|gb|EEO89646.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A]
 gi|262361135|gb|ACY57856.1| DNA polymerase III subunit epsilon [Yersinia pestis D106004]
 gi|270335804|gb|EFA46581.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27]
 gi|294353557|gb|ADE63898.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003]
 gi|320014218|gb|ADV97789.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 254

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 82/187 (43%), Positives = 120/187 (64%), Gaps = 11/187 (5%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+F+ I  EF DF   + AE + HNA FD+GF++ E + + +D P   +
Sbjct: 66  HGISDEFLADKPTFADITPEFLDFI--RGAELVIHNAAFDIGFMDYEFRMLQQDIPKTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFK 186
            + F  +
Sbjct: 184 SLTFSME 190


>gi|325983345|ref|YP_004295747.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
 gi|325532864|gb|ADZ27585.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
          Length = 245

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 86/174 (49%), Positives = 112/174 (64%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ K   RI+EI AVEL +   T   F  +L P  R++   AL++HG+
Sbjct: 1   MRQIVLDTETTGLECKLGHRIVEIAAVELCNRQFTGSHFHYYLNPE-RESDEGALQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL+DK  F  I  EF +F +  +AE I HNA FDVGF+N EL   N   LD   S+I
Sbjct: 60  TMEFLQDKAKFYEISREFLNFIS--DAELIIHNAPFDVGFLNHELGLCNLKALDNYCSQI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            DTL +A+  HP  RN+L++LC+RY I  S R  HGALLD+ LL++VY+ M  G
Sbjct: 118 TDTLKLAKELHPGKRNNLDALCERYNIDNSKRKLHGALLDAELLAEVYLAMTRG 171


>gi|17546591|ref|NP_519993.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum GMI1000]
 gi|17428890|emb|CAD15574.1| probable dna polymerase III (epsilon chain) protein [Ralstonia
           solanacearum GMI1000]
          Length = 242

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 80/174 (45%), Positives = 111/174 (63%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR+IEIG VEL++   T R    +L P  R+    A+ +HGI
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYLNPE-REIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T+EF+ DKP F+ +  E  D+   Q AE I HNA FD+GF++ E +R+   P     +  
Sbjct: 60  TNEFVADKPKFAEVVDEIRDYV--QGAEAIIHNAAFDLGFLDMEFKRLGLPPFREHLAGH 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL  ARR  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G
Sbjct: 118 IDTLLDARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRG 171


>gi|332288192|ref|YP_004419044.1| DNA polymerase III subunit epsilon [Gallibacterium anatis UMN179]
 gi|330431088|gb|AEC16147.1| DNA polymerase III subunit epsilon [Gallibacterium anatis UMN179]
          Length = 248

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 81/191 (42%), Positives = 118/191 (61%), Gaps = 14/191 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++ ++ R +V D ETTG+   ++     RIIEIGAVEL++   T R F V+L P+ ++  
Sbjct: 1   MQMDENRIVVLDTETTGMSGTSEPQIGHRIIEIGAVELVNRRYTGRNFHVYLQPD-QQVD 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QR 112
           PEA+ +HGITDEFL DKP F  +  EF +F   + AE + HNA FDV F+N E     Q 
Sbjct: 60  PEAVAVHGITDEFLADKPRFKEVAQEFINFI--KGAELVIHNAPFDVAFMNQEFALQGQA 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  D L   ++ D+L +AR+ +P  +N L++LC R GI  S R+ HGALLD+ +L+DVY+
Sbjct: 118 LTTDQL--CKVTDSLKVARQLYPGKKNSLDALCSRLGIDNSKRTLHGALLDAEILADVYL 175

Query: 173 KMMVGGSQINF 183
            M  G   +  
Sbjct: 176 AMTGGQGSLQL 186


>gi|91788057|ref|YP_549009.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666]
 gi|91697282|gb|ABE44111.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666]
          Length = 234

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 114/174 (65%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL ++N DRIIEIG VEL+    T      +L P  R +  +ALK+HGI
Sbjct: 1   MRQIVLDTETTGLSAENGDRIIEIGCVELVGRKLTGNNRHFYLNPE-RDSHEDALKVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           ++EFLKDKP F+++  E  ++   Q AE I HNA FDV F+N EL+ I +DP+    +++
Sbjct: 60  SNEFLKDKPKFAAVADELLEYL--QGAEIIIHNAPFDVSFLNKELELIGRDPIRHCVAKV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D+L +A+   P  RN L++LC R  +  S R+ HGALLD+ LL+DVYI +  G
Sbjct: 118 TDSLMMAKELFPGKRNSLDALCDRLDVDNSGRTLHGALLDAELLADVYINLTRG 171


>gi|326317571|ref|YP_004235243.1| DNA polymerase III subunit epsilon [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323374407|gb|ADX46676.1| DNA polymerase III, epsilon subunit [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 243

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 90/237 (37%), Positives = 130/237 (54%), Gaps = 14/237 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++  DRIIE+G VELL+   T     ++  P  R +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSAEGGDRIIELGCVELLNRKLTGNNLHLYFNPE-RDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124
           +EFLKDKP F+ +  E  ++   Q AE I HNA FDVGF+N EL+   +         + 
Sbjct: 62  NEFLKDKPKFAEVVDEILEYL--QGAEIIIHNAAFDVGFLNKELELTGRPAFTSYVESVT 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +A+  +P  RN L++LC R G+  S R+ HGALLD+ LL+DVYI +  G   +   
Sbjct: 120 DTLVMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLIA 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237
               E     E    +  + L     P+    +++EL  HD+ +  +    G   IW
Sbjct: 180 DDAQEG---DESAVRLAPVDLSAFTLPVLLA-SEQELAAHDEVLAQIDKASGGKTIW 232


>gi|16124261|ref|NP_418825.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15]
 gi|221232944|ref|YP_002515380.1| DNA polymerase III subunit epsilon [Caulobacter crescentus NA1000]
 gi|13421091|gb|AAK21993.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15]
 gi|220962116|gb|ACL93472.1| DNA polymerase III, epsilon chain [Caulobacter crescentus NA1000]
          Length = 237

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 85/235 (36%), Positives = 131/235 (55%), Gaps = 9/235 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTG D K  DR++EIG +E++D+  T R+F  + C   R    EA K+HG++
Sbjct: 3   REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEY-CDPLRDMPAEAEKVHGLS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             FL  KP F  I   F DF  +     +AHNA FD  F+N EL++  K P+   R +DT
Sbjct: 62  SAFLTGKPKFHEIADRFLDFVGDSVV--VAHNAAFDRQFVNFELEKCGKAPIHEERWVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LCKR+ I++  R KHGAL+D+HLL++VY+++  GG +      
Sbjct: 120 LAMAKKRFPGMYNSLDALCKRFKISLESRDKHGALIDAHLLAEVYLELQ-GGKERALELT 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWDRY 240
            +          T        R +PL  R T  E + H   + + L   A+W ++
Sbjct: 179 HSTGAM---AVSTAIQGVYAARSRPLAPRSTDAEREIHAAWVRKNLKDKALWIQF 230


>gi|259909387|ref|YP_002649743.1| DNA polymerase III subunit epsilon [Erwinia pyrifoliae Ep1/96]
 gi|224965009|emb|CAX56539.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae Ep1/96]
 gi|283479460|emb|CAY75376.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae DSM 12163]
          Length = 252

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 93/245 (37%), Positives = 141/245 (57%), Gaps = 19/245 (7%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F V+L P+ R   PEA
Sbjct: 5   NTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLIDPEA 63

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN---AELQRINKD 116
             +HGI DEFL DKP+F+ I  +F  + N   AE + HNA FD+GF++   A+LQR    
Sbjct: 64  FGVHGIADEFLLDKPTFAQIADDFLAYIN--GAELVIHNASFDIGFMDYEFAKLQRGIAK 121

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLDS +L++V++ M  
Sbjct: 122 TETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFLTMT- 180

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTL---G 232
            G Q +  F    +R  ++  +T+  I+  +    L   R +++EL  H+  +  +   G
Sbjct: 181 -GGQTSLAFSMEGEREKQQGGETIHRIA--RPSSGLRVVRASEQELMAHEARLDLVEKKG 237

Query: 233 KNAIW 237
            + +W
Sbjct: 238 GSCLW 242


>gi|90414055|ref|ZP_01222038.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
 gi|90324850|gb|EAS41378.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
          Length = 246

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 92/249 (36%), Positives = 142/249 (57%), Gaps = 22/249 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDR-----IIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R IV D ETTG++          IIEIGAVE+++   T  +F V++ P+ R   
Sbjct: 5   MKATNQRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEIINRKLTGNSFHVYIKPD-RTIE 63

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            EA+ +HGITDEFL  KP +  +  EF +F   + AE +AHNA FDVGF++ E +++N +
Sbjct: 64  VEAIGVHGITDEFLIGKPVYKEVHDEFLEFI--KGAELVAHNAPFDVGFMDYEFRKLNPN 121

Query: 117 ---PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 122 IGKTEDFCKVTDTLAMAKKIFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLL 181

Query: 174 MMVGGSQINFGFKTNEDR---FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           M  G + +    +  EDR      E K+  P   LLK         + +E++ H+  +  
Sbjct: 182 MTGGQTSLALSAE-REDRDAGTGSEIKRIAPGRKLLK-----VLHASADEIEAHESRLDI 235

Query: 231 LGK--NAIW 237
           + K  + +W
Sbjct: 236 ISKKGDVMW 244


>gi|27904727|ref|NP_777853.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
 gi|31340041|sp|Q89AN3|DPO3E_BUCBP RecName: Full=DNA polymerase III subunit epsilon
 gi|27904124|gb|AAO26958.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
          Length = 245

 Score =  154 bits (389), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 99/255 (38%), Positives = 143/255 (56%), Gaps = 38/255 (14%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           RKIV DIETTG++      KN +IIEIGAVE+++   T   F  ++ PN R    ++ K+
Sbjct: 6   RKIVLDIETTGMNPAGCFYKNHKIIEIGAVEMINNVFTGNNFHSYIQPN-RLIDKQSFKI 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119
           HGITD FL DKP F  I  +F ++    N++ I HNAKFDVGFIN EL  IN D     D
Sbjct: 65  HGITDNFLLDKPKFHEISVKFLEYIT--NSDLIIHNAKFDVGFINYELNMINSDKRKISD 122

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              ++DTL +AR+  P  +N L++LC RY I +SHR  H AL+D+ LL+ VY  M     
Sbjct: 123 YCNVVDTLPLARQLFPGKKNSLDALCNRYKINVSHRDFHSALIDAKLLAKVYTFMTSFQQ 182

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI---------TKEELDEHDKTIQT 230
            I+  F  N             N++ ++++  L +R+         TK+EL +H K ++ 
Sbjct: 183 SISI-FDKNS------------NLNSIQKNAKLDSRVPFRSTLLLATKDELQQHMKYLKY 229

Query: 231 LGK---NAIW--DRY 240
           + +   N +W  D+Y
Sbjct: 230 VKQETGNCVWLEDKY 244


>gi|120611120|ref|YP_970798.1| DNA polymerase III subunit epsilon [Acidovorax citrulli AAC00-1]
 gi|120589584|gb|ABM33024.1| DNA polymerase III, epsilon subunit [Acidovorax citrulli AAC00-1]
          Length = 243

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/237 (37%), Positives = 130/237 (54%), Gaps = 14/237 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++  DRIIE+G VELL+   T     ++  P  R +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSAEGGDRIIELGCVELLNRKLTGNNLHLYFNPE-RDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124
           +EFLKDKP F+ +  E  ++   Q AE I HNA FDVGF+N EL+   +         + 
Sbjct: 62  NEFLKDKPKFAEVVDEILEYL--QGAEIIIHNAAFDVGFLNKELELTGRPAFTSYVESVT 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +A+  +P  RN L++LC R G+  S R+ HGALLD+ LL+DVYI +  G   +   
Sbjct: 120 DTLVMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLIA 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237
               E     E    +  + L     P+    +++EL  HD+ +  +    G   IW
Sbjct: 180 DDAQEG---DETAVRLAPVDLSAFTLPVLLA-SEQELAAHDEVLAQIDKASGGKTIW 232


>gi|121609336|ref|YP_997143.1| DNA polymerase III subunit epsilon [Verminephrobacter eiseniae
           EF01-2]
 gi|121553976|gb|ABM58125.1| DNA polymerase III, epsilon subunit [Verminephrobacter eiseniae
           EF01-2]
          Length = 237

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/173 (46%), Positives = 110/173 (63%), Gaps = 6/173 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL +   DRIIE+G VELL+   T     ++  P GR +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSADSGDRIIELGCVELLNRKLTGNNLHLYFNP-GRDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124
           +EFLKDKP F+ +  +   +   Q AE I HNA FDVGF+N EL+      L     R+ 
Sbjct: 62  NEFLKDKPRFAELVDDILQYL--QGAELIIHNAAFDVGFLNKELELAGHPALAHCVERVT 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           DTL++A+  +P  RN L++LC R G+  S R+ HGALLD+ LL+DVYI +  G
Sbjct: 120 DTLAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYIHLTRG 172


>gi|254468292|ref|ZP_05081698.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13]
 gi|207087102|gb|EDZ64385.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13]
          Length = 219

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/186 (45%), Positives = 115/186 (61%), Gaps = 6/186 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGLD ++  RIIEI AVE+++   TN  F V++ P  R+    A ++HG+
Sbjct: 1   MRQIFLDTETTGLDPAQGHRIIEIAAVEMINRQVTNNQFHVYINPE-REIDEAAQEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL DKP F SI  +F  F    ++E I HNA FD+GF+N EL RI K  ++     I
Sbjct: 60  TLEFLSDKPGFESISEKFISFI--ADSELIIHNAPFDIGFLNMELGRIKKGVVEDYAEVI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L +AR   P  RN+L++LC+ YG+  S R+ HGALLDS LL++V+I M  G   +  
Sbjct: 118 TDSLVMARELRPGQRNNLDALCRHYGVDNSERNLHGALLDSLLLAEVFIGMTRGQEALEI 177

Query: 184 GFKTNE 189
            F   E
Sbjct: 178 DFNNQE 183


>gi|117923346|ref|YP_863963.1| DNA polymerase III subunit epsilon [Magnetococcus sp. MC-1]
 gi|117607102|gb|ABK42557.1| DNA polymerase III, epsilon subunit [Magnetococcus sp. MC-1]
          Length = 237

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/241 (39%), Positives = 141/241 (58%), Gaps = 16/241 (6%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG D K   RIIEIG VEL++  K +   Q ++ P  R+   +A K+HGIT
Sbjct: 3   RLIVLDTETTGFDPKEGHRIIEIGCVELVNMRKGDER-QWYVNPE-REIPADATKVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           D  + + P F  I+ EF  F  E +   + HNA+FD+ F+NAEL R+NK  + P  R ID
Sbjct: 61  DADVANSPKFKEIYHEFLAFIGEDS--LVIHNAEFDMRFLNAELTRLNKRLVMPMERAID 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +ARRK P S  +L++LCKR G+  S R+ HGALLD+HLL++VY+++M GG+Q +   
Sbjct: 119 TIPLARRKFPGSTVNLDALCKRLGVDNSGRTFHGALLDAHLLAEVYVELM-GGNQFSLEM 177

Query: 186 KTNEDRFFKE----EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238
             +E     +     K   P   L+    P   ++++E    H+  +Q L +    A+W+
Sbjct: 178 AADESGRIAQPSDSPKDGAPGPGLMM--APRDWQVSEESTQAHEAFLQLLDRESGGAVWN 235

Query: 239 R 239
           +
Sbjct: 236 K 236


>gi|162148736|ref|YP_001603197.1| DNA polymerase III epsilon subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545498|ref|YP_002277727.1| DNA polymerase III subunit epsilon [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787313|emb|CAP56907.1| putative DNA polymerase III epsilon subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533175|gb|ACI53112.1| DNA polymerase III, epsilon subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 226

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/231 (38%), Positives = 130/231 (56%), Gaps = 10/231 (4%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I+FD ETTGLD ++ DR+IEI A+EL+    T R F V + P+ R    EA ++HG T
Sbjct: 3   RAILFDTETTGLDPARGDRVIEIAALELVGDLPTGRHFHVLIHPD-RDIPEEASRVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+ KP F  I  +F  F  + +   IAHNA+FD GF+NAEL+R  +  L   R++DT
Sbjct: 62  LADLEGKPRFHEIADDFLAFIGQDD--LIAHNARFDFGFLNAELKRAERPALSLDRMVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L IAR ++P   N L++LC+R+ I +S R+ H ALLD  LL++VY+++M GG Q   G  
Sbjct: 120 LDIARDRYPGLPNSLDALCRRFSIDLSARTTHNALLDCRLLAEVYLELM-GGRQRGLGLT 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
             +        +      L     P     T++EL  H + +  + K  IW
Sbjct: 179 VQD----GGGAQVSYAYDLAGARTPRLIVPTEQELAAHGRFLDKI-KEPIW 224


>gi|238759160|ref|ZP_04620328.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236]
 gi|238702576|gb|EEP95125.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236]
          Length = 259

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/192 (42%), Positives = 124/192 (64%), Gaps = 11/192 (5%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 12  RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKPSF+ I  EF +F   + AE + HNA FD+GF++ E + + +D P   +
Sbjct: 71  HGISDEFLADKPSFADITPEFLEFI--RGAELVIHNAAFDIGFMDYEFRMLQQDIPKTET 128

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G +
Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188

Query: 180 QINFGFKTNEDR 191
            ++F  + ++ +
Sbjct: 189 SLSFSMEGDQSQ 200


>gi|300703774|ref|YP_003745376.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum
           CFBP2957]
 gi|299071437|emb|CBJ42756.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum
           CFBP2957]
          Length = 242

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/176 (45%), Positives = 114/176 (64%), Gaps = 10/176 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR+IEIG VEL++   T R    ++ P  R+    A+ +HGI
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPS 121
           T+EF+ DKP F+ + +E  D+   Q AE I HNA FD+GF++ E +R+     ++ LD  
Sbjct: 60  TNEFVADKPKFAEVVAEIRDYV--QGAEAIIHNAAFDLGFLDMEFRRLGLPSFREHLDGH 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             IDTL  ARR  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G
Sbjct: 118 --IDTLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRG 171


>gi|238784821|ref|ZP_04628822.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970]
 gi|238714237|gb|EEQ06248.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970]
          Length = 259

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 123/192 (64%), Gaps = 11/192 (5%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 12  RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+F+ I  EF +F   + AE I HNA FD+GF++ E + + +D P   +
Sbjct: 71  HGISDEFLADKPTFADIAPEFLEFI--RGAELIIHNAAFDIGFMDHEFRMLQQDIPKTET 128

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +LS+VY+ M  G +
Sbjct: 129 FCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILSEVYLAMTGGQT 188

Query: 180 QINFGFKTNEDR 191
            + F  + ++ +
Sbjct: 189 SLTFSMEGDQSQ 200


>gi|52425625|ref|YP_088762.1| DNA polymerase III subunit epsilon [Mannheimia succiniciproducens
           MBEL55E]
 gi|52307677|gb|AAU38177.1| DnaQ protein [Mannheimia succiniciproducens MBEL55E]
          Length = 260

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/259 (36%), Positives = 143/259 (55%), Gaps = 36/259 (13%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+I+ D ETTG++      +   IIEIGAVE+++   T R   +++ P+ R   PEA+K+
Sbjct: 9   RQILLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPD-RLVDPEAIKV 67

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDP 120
           HGITDE L+DKP F+ +  EF DF   + AE + HNA FDVGF++ E ++  I+    D 
Sbjct: 68  HGITDEMLEDKPVFTEVAQEFIDFI--KGAELLIHNAPFDVGFMDYEFRKHHIDVKTADI 125

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             + DTL +AR+ +P  RN L++LC R GI  + R  HGALLD+ +L DVY+ M  G + 
Sbjct: 126 CSVTDTLQLARQMYPGKRNSLDALCDRLGIDNTKRVLHGALLDAEILGDVYLVMTGGQTS 185

Query: 181 INFGFKTNEDR-----------FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
           +   F  NE               +   K   ++SLL+         T EEL  H + I+
Sbjct: 186 L---FDDNEPELADIHSAKAHILAQNADKVAHHLSLLQP--------TDEELQAHLEYIK 234

Query: 230 TLGK----NAIWDRYISSN 244
            + K    N +W++ + S+
Sbjct: 235 LINKKSKDNCLWEKRLGSD 253


>gi|260596631|ref|YP_003209202.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032]
 gi|260215808|emb|CBA28259.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032]
          Length = 243

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/243 (37%), Positives = 137/243 (56%), Gaps = 21/243 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFMV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL +KP F  +  +F D+   + AE + HNA FD+GF++ E   + +  P   +
Sbjct: 66  HGISDEFLMNKPVFGDVVEDFLDYI--RGAELVIHNASFDIGFMDYEFGMLKRGLPKTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 183

Query: 180 QINFGFKTN--EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234
            I F  + +  + R     ++ V   S LK       R   EEL  H+     +Q  G +
Sbjct: 184 SIAFAMEGDGQQQRDDTGIQRVVRQASRLK-----VVRACDEELAAHESRLDLVQKKGGS 238

Query: 235 AIW 237
            +W
Sbjct: 239 CLW 241


>gi|194364623|ref|YP_002027233.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
           R551-3]
 gi|194347427|gb|ACF50550.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 243

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 130/239 (54%), Gaps = 13/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +RI+EIG VEL     T   +  ++ P+       A ++ G+
Sbjct: 1   MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQG-AQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           T EFL DKP F+ I  EF  F +   AE I HNA FD+GF++ EL  +        D   
Sbjct: 60  TLEFLDDKPDFAQIADEFLAFID--GAELIIHNAAFDLGFLDNELSLLGPQYGKITDRCT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDTL +AR + P  RN L++LC+R G+  SHR+ HG LLD+ +L DVYI +  G  +I 
Sbjct: 118 VIDTLVMARERFPGQRNSLDALCRRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238
           FG   +E        +      LL R + +    T  EL+ H   ++ L K   +A+WD
Sbjct: 178 FGLGDDEAGAAGAALQAFDTSKLLPRPRVV---ATPSELEAHTARLERLRKKAGHALWD 233


>gi|303250637|ref|ZP_07336834.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650625|gb|EFL80784.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 257

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/254 (36%), Positives = 142/254 (55%), Gaps = 22/254 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKP F+ +  EF +F   + AE I HNA FDV F++ E   +  
Sbjct: 60  EEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117

Query: 116 DP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P    +   + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKT---VPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
            MM GG     G    ED     E      +  I+  +    +   +++EE   H++ ++
Sbjct: 178 -MMTGGQLALLG---EEDATATHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLK 233

Query: 230 TLGK----NAIWDR 239
            + K    N IW R
Sbjct: 234 LIDKKSKGNCIWMR 247


>gi|302381472|ref|YP_003817295.1| DNA polymerase III subunit epsilon [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192100|gb|ADK99671.1| DNA polymerase III, epsilon subunit [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 247

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/235 (37%), Positives = 133/235 (56%), Gaps = 8/235 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG D +  DR+IE+G +E+LD   T RTF  F+ P  R    +A+++HGIT
Sbjct: 3   REIVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPE-RLIPADAIRVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +KD P F+ I  +  DF    +A  IAHNA+FD  FI+ E  R     L  +R IDT
Sbjct: 62  DDKVKDAPKFAQIVVDLMDFIG--DAPVIAHNAQFDRNFIDHECGRCGHPLLHETRWIDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +A+++ P   N L++LCKRY I++  R+ HGAL+D+ LL++VY+++  GG +      
Sbjct: 120 LQLAQKRFPGMANSLDALCKRYKISLVDRTLHGALIDARLLAEVYLELK-GGKERVLDLS 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWDRY 240
           +  +              L  R +PL  R+   E + H   +  TL   ++W+ Y
Sbjct: 179 SRRESVAAAAHAAAGGYGL--RPRPLAPRLHASEGEAHAAFLAATLKDLSLWEGY 231


>gi|78046646|ref|YP_362821.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925275|ref|ZP_08186679.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118]
 gi|78035076|emb|CAJ22721.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325544321|gb|EGD15700.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118]
          Length = 244

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 133/239 (55%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           T EFL DKP F  +  EF  + +   AE I HNA FD+GF++ EL  +       ++ + 
Sbjct: 60  TLEFLADKPLFGEVVDEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F    +  +        +     L   +P    +T  EL  H+  +  L K    A+WD
Sbjct: 178 FA-SADAGQQTDAASGVIAFDPALLLPRPRIA-VTASELQAHEARLAQLRKKAGRALWD 234


>gi|238762660|ref|ZP_04623629.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC
           33638]
 gi|238698965|gb|EEP91713.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC
           33638]
          Length = 259

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/192 (42%), Positives = 125/192 (65%), Gaps = 11/192 (5%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 12  RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+F+ I SEF +F   + AE + HNA FD+GF++ E + + +D P   +
Sbjct: 71  HGISDEFLADKPTFADIASEFLEFI--RGAELVIHNAAFDIGFMDYEFRMLQQDIPKTET 128

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G +
Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188

Query: 180 QINFGFKTNEDR 191
            ++F  + ++ +
Sbjct: 189 SLSFSMEGDQSQ 200


>gi|325914917|ref|ZP_08177249.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538810|gb|EGD10474.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 244

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 133/239 (55%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           T EFL DKP F  +  EF  + +   AE I HNA FD+GF++ EL  +       +D + 
Sbjct: 60  TLEFLADKPLFGDVVEEFLAYID--GAELIIHNAAFDLGFLDNELSLLGDGYGRIIDRAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  +HR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F    +  +   E    +     L   +P    +T  E   H+  +  L K    A+WD
Sbjct: 178 FA-SADAGQNSNESSGMIAFDPALLLPRPRVV-VTASESQAHEARLAQLRKKAGRALWD 234


>gi|322515310|ref|ZP_08068307.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus
           ureae ATCC 25976]
 gi|322118686|gb|EFX90898.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus
           ureae ATCC 25976]
          Length = 257

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/254 (37%), Positives = 144/254 (56%), Gaps = 22/254 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKP F+ +  EF +F   + AE I HNA FDV F++ E   +  
Sbjct: 60  EEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117

Query: 116 DPLDPSRII---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P   + I    D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEICSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKT---VPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
            +M GG     G    ED     E  T   +  I+  +    +  ++++EE   H++ ++
Sbjct: 178 -IMTGGQLALLG---EEDASTNHENITDLGLGTITKFETSGLIVLQLSEEEQAAHEEYLK 233

Query: 230 TLGK----NAIWDR 239
            + K    N IW R
Sbjct: 234 LIDKKSKGNCIWMR 247


>gi|121997071|ref|YP_001001858.1| DNA polymerase III subunit epsilon [Halorhodospira halophila SL1]
 gi|121588476|gb|ABM61056.1| DNA polymerase III, epsilon subunit [Halorhodospira halophila SL1]
          Length = 243

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/239 (38%), Positives = 133/239 (55%), Gaps = 16/239 (6%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTG+D ++  RIIEIG VEL+    T   F  +L P+ R     A  +HG+
Sbjct: 1   MRQILLDTETTGMDPTEGHRIIEIGCVELVRRRLTGNNFHEYLNPD-RAVDEGAENVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSR 122
           ++ FL DKP F+ I   F D+   Q+AE I HNA FDVGFI+AEL R+        D   
Sbjct: 60  SNRFLADKPRFADIARRFVDYV--QDAELIIHNAPFDVGFIDAELARLGPAWGQLEDYCT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I D+L +ARR HP  R  L++LCKRY +  S R  HGALLDS LL++VY+ M  G  +++
Sbjct: 118 ITDSLQMARRMHPGQRCSLDALCKRYSVDGSRRELHGALLDSELLAEVYLAMTGGQGKLS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ----TLGKNAIW 237
              +  E    +  ++       L+  +P      + E + H++ +Q    T G  A+W
Sbjct: 178 LEGEGLEPGGAEPVQRLSAERPRLRVPEP-----GELEREAHEQLLQRIEATCGGPALW 231


>gi|32035046|ref|ZP_00135112.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126208748|ref|YP_001053973.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           L20]
 gi|126097540|gb|ABN74368.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 257

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/254 (36%), Positives = 142/254 (55%), Gaps = 22/254 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKP F+ +  EF +F   + AE I HNA FDV F++ E   +  
Sbjct: 60  DEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLGN 117

Query: 116 DP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P    +   + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKT---VPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
            MM GG     G    ED     E      +  I+  +    +   +++EE   H++ ++
Sbjct: 178 -MMTGGQLALLG---EEDATATHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLK 233

Query: 230 TLGK----NAIWDR 239
            + K    N IW R
Sbjct: 234 LIDKKSKGNCIWMR 247


>gi|15616860|ref|NP_240073.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11132278|sp|P57337|DPO3E_BUCAI RecName: Full=DNA polymerase III subunit epsilon
 gi|25299956|pir||G84958 DNA-directed DNA polymerase (EC 2.7.7.7) epsilon chain [imported] -
           Buchnera sp. (strain APS)
 gi|10038924|dbj|BAB12959.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 237

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/244 (40%), Positives = 138/244 (56%), Gaps = 18/244 (7%)

Query: 5   NKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N+ R I+ D ETTG++       N RIIEIGAVE++D   T   F V++ P GR     A
Sbjct: 2   NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           LK+HGIT++FL DKP F  I   F ++   +N+  + HNA FDVGFIN EL+ +NK    
Sbjct: 61  LKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDVGFINQELEILNKKIKI 118

Query: 120 PS--RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +   IIDTL IAR   P  +N L++LC RY I  SHR+ H A++DS+LL  +Y+ +M G
Sbjct: 119 NTFCSIIDTLKIARELFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYL-LMTG 177

Query: 178 GSQINFGFKT-NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL--GKN 234
           G    F   T N    FK+ KK +     LK +       T +E D H+K +Q +     
Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYMKDKST 233

Query: 235 AIWD 238
            +W+
Sbjct: 234 CLWN 237


>gi|190150601|ref|YP_001969126.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303252089|ref|ZP_07338258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|189915732|gb|ACE61984.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302649071|gb|EFL79258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 257

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/254 (36%), Positives = 142/254 (55%), Gaps = 22/254 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKP F+ +  EF +F   + AE I HNA FDV F++ E   +  
Sbjct: 60  DEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117

Query: 116 DP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P    +   + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKT---VPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
            MM GG     G    ED     E      +  I+  +    +   +++EE   H++ ++
Sbjct: 178 -MMTGGQLALLG---EEDATATHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLK 233

Query: 230 TLGK----NAIWDR 239
            + K    N IW R
Sbjct: 234 LIDKKSKGNCIWMR 247


>gi|219681615|ref|YP_002468001.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682172|ref|YP_002468556.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471303|ref|ZP_05635302.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621905|gb|ACL30061.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624458|gb|ACL30613.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311087677|gb|ADP67756.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 237

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/244 (40%), Positives = 139/244 (56%), Gaps = 18/244 (7%)

Query: 5   NKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N+ R I+ D ETTG++       N RIIEIGAVE++D   T   F V++ P GR     A
Sbjct: 2   NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           LK+HGIT++FL DKP F  I   F ++   +N+  + HNA FDVGFIN EL+ +NK    
Sbjct: 61  LKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDVGFINQELEILNKKIKI 118

Query: 120 PS--RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +   IIDTL +AR+  P  +N L++LC RY I  SHR+ H A++DS+LL  +Y+ +M G
Sbjct: 119 NTFCSIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYL-LMTG 177

Query: 178 GSQINFGFKT-NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL--GKN 234
           G    F   T N    FK+ KK +     LK +       T +E D H+K +Q +     
Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYMKDKST 233

Query: 235 AIWD 238
            +W+
Sbjct: 234 CLWN 237


>gi|311086562|gb|ADP66643.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 237

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/235 (41%), Positives = 136/235 (57%), Gaps = 16/235 (6%)

Query: 5   NKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N+ R I+ D ETTG++       N RIIEIGAVE++D   T   F V++ P GR     A
Sbjct: 2   NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           LK+HGIT++FL DKP F  I   F ++   +N+  + HNA FDVGFIN EL+ +NK    
Sbjct: 61  LKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDVGFINQELEILNKKIKI 118

Query: 120 PS--RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +   IIDTL +AR+  P  +N L++LC RY I  SHR+ H A++DS+LL  +Y+ +M G
Sbjct: 119 NTFCSIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYL-LMTG 177

Query: 178 GSQINFGFKT-NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           G    F   T N    FK+ KK +     LK +       T +E D H+K +Q +
Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYM 228


>gi|307246199|ref|ZP_07528280.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255179|ref|ZP_07536997.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259617|ref|ZP_07541341.1| hypothetical protein appser11_14150 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306852808|gb|EFM85032.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862052|gb|EFM94028.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866262|gb|EFM98126.1| hypothetical protein appser11_14150 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 257

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/251 (35%), Positives = 140/251 (55%), Gaps = 16/251 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKP F+ +  EF +F   + AE I HNA FDV F++ E   +  
Sbjct: 60  EEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117

Query: 116 DP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P    +   + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            MM GG     G +             +  I+  +    +   +++EE   H++ ++ + 
Sbjct: 178 -MMTGGQLALLGEEDATSNHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236

Query: 233 K----NAIWDR 239
           K    N IW R
Sbjct: 237 KKSKGNCIWMR 247


>gi|227112969|ref|ZP_03826625.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 245

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/243 (36%), Positives = 143/243 (58%), Gaps = 20/243 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNMLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+++ I  +F DF   + AE + HNA FD+GF++ E + +N+D P   +
Sbjct: 66  HGISDEFLADKPTYADIVDDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRDLPKTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE--ELDEHDKTIQTL---GKN 234
            + F  +       +++ +    I  + R +   T +  +  EL  H++ +  +   G +
Sbjct: 184 SLTFSMEGET----QQKSENTETIQRIVRPQSALTVLYADEAELLAHEQRLDLIAKKGGS 239

Query: 235 AIW 237
            +W
Sbjct: 240 CLW 242


>gi|325920993|ref|ZP_08182879.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325548527|gb|EGD19495.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC
           19865]
          Length = 244

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 136/239 (56%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           T EFL DKP F+ +  EF  + +   AE I HNA FD+GF++ EL  +  +    ++ + 
Sbjct: 60  TLEFLADKPLFADVVEEFLAYID--GAELIIHNAAFDLGFLDNELSLLGDNYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F    +  +  ++    +     L   +P    +T  E   H+  +  L K    A+WD
Sbjct: 178 FA-SADAGQSTQDADGMISFDPALLLPRPRVA-VTASESQAHEARLAQLRKKAGRALWD 234


>gi|227329796|ref|ZP_03833820.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 245

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/187 (42%), Positives = 121/187 (64%), Gaps = 11/187 (5%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+++ I  +F DF   + AE + HNA FD+GF++ E + +N+D P   +
Sbjct: 66  HGISDEFLADKPTYADIVDDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRDLPKTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFK 186
            + F  +
Sbjct: 184 SLTFSME 190


>gi|85058570|ref|YP_454272.1| DNA polymerase III subunit epsilon [Sodalis glossinidius str.
           'morsitans']
 gi|84779090|dbj|BAE73867.1| DNA polymerase III epsilon subunit [Sodalis glossinidius str.
           'morsitans']
          Length = 252

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/246 (35%), Positives = 141/246 (57%), Gaps = 25/246 (10%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHFHVYLKPD-RLVDPEAFNV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL DKP+F+ +  EF  F   +  E + HNA FD+GF++ E   +N+       
Sbjct: 66  HGISDEFLADKPTFADVADEFLHFI--RGGELVIHNAPFDIGFMDYEFGMLNRGIAKTDT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L +AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DV++ M  G +
Sbjct: 124 FCKVTDSLLLARKMFPGKRNSLDALCDRYLIDNSKRTLHGALLDAEILADVFLLMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI-----TKEELDEHDK---TIQTL 231
            + F  +       ++E++ V     ++R + + T +     + EE+  H++    +Q  
Sbjct: 184 AMRFAMEG------EQEQRDVGETVQIQRVQRVQTSLKVIYASDEEVVAHEQRLDLVQKK 237

Query: 232 GKNAIW 237
           G + +W
Sbjct: 238 GGSCVW 243


>gi|319762901|ref|YP_004126838.1| DNA polymerase iii, epsilon subunit [Alicycliphilus denitrificans
           BC]
 gi|330824980|ref|YP_004388283.1| DNA polymerase III subunit epsilon [Alicycliphilus denitrificans
           K601]
 gi|317117462|gb|ADU99950.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans
           BC]
 gi|329310352|gb|AEB84767.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans
           K601]
          Length = 242

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/237 (38%), Positives = 135/237 (56%), Gaps = 15/237 (6%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++N DRIIE+G VELL    T     ++L P  R +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSAENGDRIIELGCVELLSRKLTGNNLHLYLNPE-RDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124
           +EFL+DKP F+ +  +  ++   + AE I HNA FDVGF++ EL+     PL      +I
Sbjct: 62  NEFLRDKPKFAEVVHDILEYL--RGAELIIHNASFDVGFLDKELELAGLPPLAAHVDGVI 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++A+   P  RN L++LC R  +  S R+ HGALLD+ LL+DVYI M  G   +   
Sbjct: 120 DTLAMAKEMFPGKRNSLDALCDRLEVDNSGRTLHGALLDAELLADVYINMTRGQDALLIM 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237
            +T       E    V  + L +   P+    + +EL EH+  +  + K++    IW
Sbjct: 180 DETAN----GEGGVKVAAVDLSRLVLPVLLA-SDQELAEHEDLLAQIDKSSAGKTIW 231


>gi|153208787|ref|ZP_01947019.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161831371|ref|YP_001596268.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331]
 gi|165920933|ref|ZP_02219603.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334]
 gi|120575749|gb|EAX32373.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161763238|gb|ABX78880.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331]
 gi|165916781|gb|EDR35385.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334]
          Length = 232

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/239 (39%), Positives = 135/239 (56%), Gaps = 16/239 (6%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL   +  RIIEIGA+E+++   T      ++ P  R    +A+++HGI
Sbjct: 1   MRQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPE-RSIERDAIEIHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           TD FL DKP F  I +E   F   + AE I HNA FDVGF+N EL+      K      +
Sbjct: 60  TDSFLIDKPLFKDIATELISFL--KGAELIIHNAPFDVGFLNHELKLTGQSFKTLTHYCQ 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL+IAR+KHP   N+L++LC+RY +  S+R  HGALLD+ LL+ VY+ +M GG  + 
Sbjct: 118 VLDTLTIARQKHPGQHNNLDALCRRYHVDNSNRDYHGALLDAELLAQVYL-LMTGGQTVL 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWD 238
           F     E + F    ++V    L   RD     R    E + H   +Q L +N   +W+
Sbjct: 177 F-----EQQGFAVASRSVSVRPLGTDRDSLSVIRANAAETEAHRAFLQLLTENGLCLWN 230


>gi|254361771|ref|ZP_04977906.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica PHL213]
 gi|261494027|ref|ZP_05990530.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261496213|ref|ZP_05992619.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|153093306|gb|EDN74302.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica PHL213]
 gi|261308165|gb|EEY09462.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261310193|gb|EEY11393.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 258

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/255 (35%), Positives = 142/255 (55%), Gaps = 17/255 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M  +  +R++V D ETTG++           IIEIGAVE+++   T RT+ V++ P  R+
Sbjct: 1   MTEEKIIRQVVLDTETTGMNMAGGPPQIGHNIIEIGAVEVINRRLTGRTYHVYIKPP-RE 59

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              EA+ +HGIT+EFL+DKP F+ I  EF DF   + AE I HNA FDV F++ E   + 
Sbjct: 60  VDEEAIAVHGITNEFLQDKPVFAEIAEEFLDFI--KGAELIIHNAPFDVAFMDQEFSYLP 117

Query: 115 KDPLDPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             P   +    + D+L +ARR +P  RN+L++LC R GI  S R  HGALLD+ +L+DV+
Sbjct: 118 NPPAKTAEMCTVTDSLQMARRMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVF 177

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           + MM GG     G +  E      + +   +  +L  D+ +  +   EE + H   ++ +
Sbjct: 178 L-MMTGGQISLLGEEETEVVSEVIDIEEEFSAIVLNADEAIILKANDEEEESHLALLKLI 236

Query: 232 GK----NAIWDRYIS 242
            K    N +W + ++
Sbjct: 237 EKKSKGNCLWTKALT 251


>gi|241763763|ref|ZP_04761810.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN]
 gi|241366982|gb|EER61378.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN]
          Length = 237

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/173 (46%), Positives = 112/173 (64%), Gaps = 6/173 (3%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++  DRIIEIG VEL+    T      +L P  R +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSAEGGDRIIEIGCVELVSRKLTGNNKHFYLNPE-RDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124
           +EFL+DKP F+++  E  ++   Q AE I HNA FDVGF+N EL+ + +  L      + 
Sbjct: 62  NEFLRDKPKFAAVADELLEYL--QGAEVIIHNAAFDVGFLNKELELLGRPALHTFVDSVT 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           DTL++A+  +P  RN L++LC R G+  S R+ HGALLD+ LL+DVYI +  G
Sbjct: 120 DTLAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRG 172


>gi|83944955|ref|ZP_00957321.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851737|gb|EAP89592.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii
           HTCC2633]
          Length = 236

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/231 (37%), Positives = 137/231 (59%), Gaps = 11/231 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+FD ETTGLD +  DR+ E+G VE++D   T +  ++ + P  R    E   + G T
Sbjct: 4   REIIFDTETTGLDPRGGDRVTELGCVEVIDLIPTGKDLRILINPE-RDIPAEVTAVTGHT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E LKD+P F+ I  +F DF   +++  +AHNA FD+GFIN EL+R  K  +  +R IDT
Sbjct: 63  WEMLKDEPKFAEIVDQFLDFI--EDSTLVAHNAMFDMGFINMELERCGKPIIPKARFIDT 120

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            +IAR K P +   L++LCKR+ +++  R+KHGAL+DS+LL++VY+++  GG + +  F 
Sbjct: 121 AAIAREKFPGAPASLDALCKRFDVSLDSRTKHGALIDSYLLAEVYLELN-GGREQSLSFT 179

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            ++         TV   +   R K L + +T+ E   H + I  +  + +W
Sbjct: 180 GSDGG-----DGTVVYPTRAARPKSLPSLVTERERAAHAEFISEM-DDPLW 224


>gi|289664175|ref|ZP_06485756.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668767|ref|ZP_06489842.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 244

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/244 (37%), Positives = 136/244 (55%), Gaps = 22/244 (9%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           T EFL DKP F  +  EF  + +   AE I HNA FD+GF++ EL  +  +    ++ + 
Sbjct: 60  TLEFLADKPLFGEVVDEFLAYID--GAELIIHNAAFDLGFLDNELSLLGDNYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 F-----GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--- 234
           F     G +TN           +    LL R +     +T  E   H+  +  L K    
Sbjct: 178 FASADAGQQTNSASGMIAFDPAL----LLPRPR---VAVTASESQAHEARLAQLRKKAGR 230

Query: 235 AIWD 238
           A+WD
Sbjct: 231 ALWD 234


>gi|253689504|ref|YP_003018694.1| DNA polymerase III, epsilon subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756082|gb|ACT14158.1| DNA polymerase III, epsilon subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 245

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/187 (42%), Positives = 121/187 (64%), Gaps = 11/187 (5%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNMLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+++ I  +F DF   + AE + HNA FD+GF++ E + +N+D P   +
Sbjct: 66  HGISDEFLADKPTYADIVDDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRDLPKTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFK 186
            + F  +
Sbjct: 184 SLTFSME 190


>gi|238750479|ref|ZP_04611980.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380]
 gi|238711410|gb|EEQ03627.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380]
          Length = 259

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/192 (42%), Positives = 124/192 (64%), Gaps = 11/192 (5%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 12  RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLIDPEAYGV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+F+ I  EF +F   + AE + HNA FD+GF++ E + + +D P   +
Sbjct: 71  HGISDEFLADKPTFADITPEFLEFI--RGAELVIHNAAFDIGFMDYEFRMLQQDIPKTET 128

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G +
Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188

Query: 180 QINFGFKTNEDR 191
            ++F  + ++ +
Sbjct: 189 SLSFSMEGDQSQ 200


>gi|160872285|ref|ZP_02062417.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli]
 gi|159121084|gb|EDP46422.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli]
          Length = 235

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/241 (40%), Positives = 132/241 (54%), Gaps = 16/241 (6%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTG D  N  RIIEIG +EL+D   T R F  +L P GR + P A  +HG+
Sbjct: 1   MRQIILDTETTGRDINNGHRIIEIGCLELIDRQLTKRQFHCYLNP-GRDSDPGAFAIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122
           + EFL DKP F++I  E  +F   ++++ I HNA FD+ F+  EL    K      D  +
Sbjct: 60  STEFLMDKPVFTTIADELLNFI--KDSQLIIHNAPFDLAFLEYELTLTKKKYKKMTDYCQ 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+D+L +AR+ HP  RN L++LCKRY I  S R KHGALLD+ LL+ VY+ M  G + + 
Sbjct: 118 ILDSLLLARQLHPGQRNSLDALCKRYNIDHSKRDKHGALLDAELLARVYLAMTGGQTHLF 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT---IQTLGKNAIWDR 239
              K    +    +KKT    +L     P+    T EEL  H      I +L     W  
Sbjct: 178 NEPKPLTIQTHARQKKTTEATTL-----PII-YATCEELTAHKNYLNHIYSLSGQCKWLH 231

Query: 240 Y 240
           Y
Sbjct: 232 Y 232


>gi|113460748|ref|YP_718815.1| DNA polymerase III subunit epsilon [Haemophilus somnus 129PT]
 gi|170719139|ref|YP_001784286.1| DNA polymerase III subunit epsilon [Haemophilus somnus 2336]
 gi|112822791|gb|ABI24880.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT]
 gi|168827268|gb|ACA32639.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 2336]
          Length = 252

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/184 (45%), Positives = 115/184 (62%), Gaps = 11/184 (5%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+I+ D ETTG++      +   IIEIGAVE+++   T R   +++ P+ R   PEA+K+
Sbjct: 9   RQIILDTETTGMNEFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPD-RLVDPEAIKV 67

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDP 120
           HGITDE L DKP FS+I  EF DF   + AE I HNA FD+GF++ E ++   N +  D 
Sbjct: 68  HGITDEMLADKPDFSAIAQEFIDFI--KGAELIIHNAPFDIGFMDYEFKKHNFNINTADI 125

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             I DTL +AR+ +P  RN L++LC R  I  S R+ HGALLD+ +L DVY+  M GG  
Sbjct: 126 CLITDTLQMARQMYPGKRNSLDALCDRLNIDNSKRTLHGALLDAEILGDVYLA-MTGGQT 184

Query: 181 INFG 184
             FG
Sbjct: 185 SLFG 188


>gi|311085987|gb|ADP66069.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 237

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/244 (40%), Positives = 139/244 (56%), Gaps = 18/244 (7%)

Query: 5   NKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N+ R I+ D ETTG++       N RIIEIGAVE++D   T   F V++ P GR     A
Sbjct: 2   NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           LK+HGIT++FL DKP F  I   F ++   +N+  + HNA FDVGFIN EL+ +NK    
Sbjct: 61  LKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDVGFINQELEILNKKIKI 118

Query: 120 PS--RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +   I+DTL +AR+  P  +N L++LC RY I  SHR+ H A++DS+LL  +Y+ +M G
Sbjct: 119 NTFCSIVDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYL-LMTG 177

Query: 178 GSQINFGFKT-NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL--GKN 234
           G    F   T N    FK+ KK +     LK +       T +E D H+K +Q +     
Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYMKDKST 233

Query: 235 AIWD 238
            +W+
Sbjct: 234 CLWN 237


>gi|238790133|ref|ZP_04633910.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC
           33641]
 gi|238721802|gb|EEQ13465.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC
           33641]
          Length = 259

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/243 (37%), Positives = 143/243 (58%), Gaps = 21/243 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 12  RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+F+ I  EF +F   + AE + HNA FD+GF++ E + + +D P   +
Sbjct: 71  HGISDEFLADKPTFADITPEFLEFI--RGAELVIHNAAFDIGFMDYEFRMLQQDIPKTET 128

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G +
Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188

Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKN 234
            ++F  + ++ +    E  ++ +   S LK           EEL+ H+  +  +   G +
Sbjct: 189 SLSFSMEGDQSQNDSSEDIQRIIRPASGLK-----IIYAADEELEAHNSRLDLVMKKGGS 243

Query: 235 AIW 237
            +W
Sbjct: 244 CLW 246


>gi|294637713|ref|ZP_06715990.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685]
 gi|291089143|gb|EFE21704.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685]
          Length = 243

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 139/245 (56%), Gaps = 25/245 (10%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVINRRLTGRNFHVYLKPD-RLVDPEAFMV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+D+FL  +PSF+ +  EF +F   + AE + HNA FD+GF++ E  ++ +D P   +
Sbjct: 66  HGISDDFLLGQPSFADVVDEFLEFI--RGAELVIHNAPFDIGFMDYEFAKLGRDLPKTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M   G 
Sbjct: 124 FCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMT--GG 181

Query: 180 QINFGFKTNEDRFFK----EEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLG 232
           Q +  F +  D   +    E ++ V     L+         ++ EL  H++    +Q  G
Sbjct: 182 QTSLSFASEGDSATQVQAAELRRVVRGAQGLR-----VVYASEAELAAHEQRLDLVQKKG 236

Query: 233 KNAIW 237
            + +W
Sbjct: 237 GSCLW 241


>gi|311087143|gb|ADP67223.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 237

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/244 (40%), Positives = 139/244 (56%), Gaps = 18/244 (7%)

Query: 5   NKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N+ R I+ D ETTG++       N RIIEIGAVE++D   T   F V++ P GR     A
Sbjct: 2   NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           LK+HGIT++FL DKP F  I   F ++   +N+  + HNA FD+GFIN EL+ +NK    
Sbjct: 61  LKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDIGFINQELEILNKKIKI 118

Query: 120 PS--RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +   IIDTL +AR+  P  +N L++LC RY I  SHR+ H A++DS+LL  +Y+ +M G
Sbjct: 119 NTFCSIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYL-LMTG 177

Query: 178 GSQINFGFKT-NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL--GKN 234
           G    F   T N    FK+ KK +     LK +       T +E D H+K +Q +     
Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYMKDKST 233

Query: 235 AIWD 238
            +W+
Sbjct: 234 CLWN 237


>gi|300691174|ref|YP_003752169.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07]
 gi|299078234|emb|CBJ50881.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07]
          Length = 242

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 82/175 (46%), Positives = 113/175 (64%), Gaps = 8/175 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR+IEIG VEL++   T R    ++ P  R+    A+ +HGI
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123
           T+EF+ DKP F+ I +E  D+   Q AE I HNA FD+GF++ E QR+ K P     +  
Sbjct: 60  TNEFVADKPKFAEIVAEIRDYV--QGAEAIIHNAAFDLGFLDMEFQRL-KLPSFREHLAG 116

Query: 124 -IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            IDTL  ARR  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G
Sbjct: 117 HIDTLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRG 171


>gi|94676582|ref|YP_588911.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
 gi|94219732|gb|ABF13891.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
          Length = 240

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 132/224 (58%), Gaps = 11/224 (4%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV DIETTG++         RIIEIGAVE+++   T + F V+L P  R    EA K+
Sbjct: 3   RQIVLDIETTGINKLGVHYYGHRIIEIGAVEIINRRITGKNFHVYLNPE-RFIDQEAFKI 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS- 121
           HGI++ FLKDKP+F+ +  +   F ++  +E + H+A FD+GFI+ E + +N+  +  + 
Sbjct: 62  HGISNNFLKDKPTFAQVADKLITFISQ--SELVIHHAPFDIGFIDYEFKLLNRSMISKTF 119

Query: 122 -RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++ DTL +AR+  P  RN L++LC RY I   HR+KHGALLD+ +L+++Y+ M  G + 
Sbjct: 120 VQVTDTLLLARKIFPGKRNSLDALCNRYHIKNIHRTKHGALLDAKILAEIYLIMTGGQTS 179

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
           INF   T E    ++ K       L   DK        +EL EH
Sbjct: 180 INFNL-TQESNIEQKYKGKNIYFPLSHEDKLKVIYANNKELSEH 222


>gi|238799153|ref|ZP_04642606.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969]
 gi|238716994|gb|EEQ08857.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969]
          Length = 259

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 82/187 (43%), Positives = 121/187 (64%), Gaps = 11/187 (5%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 12  RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+F+ I  EF +F   + AE I HNA FD+GF++ E + + +D P   +
Sbjct: 71  HGISDEFLADKPTFAEITPEFLEFI--RGAELIIHNAAFDIGFMDYEFRMLQQDIPKTET 128

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G +
Sbjct: 129 FCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188

Query: 180 QINFGFK 186
            ++F  +
Sbjct: 189 SLSFSME 195


>gi|119775015|ref|YP_927755.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119767515|gb|ABM00086.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 242

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/249 (37%), Positives = 140/249 (56%), Gaps = 24/249 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+I+ D ETTG++          RIIEIG VE+++   T RTF  ++ P G+  
Sbjct: 3   IISNAERQIILDTETTGMNQGAGAVYLGHRIIEIGCVEVVNRRLTGRTFHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-IN 114
             EA+ +HGIT++ +  +P F  I   F DF   + AE +AHNA FD+ FIN E    + 
Sbjct: 62  DEEAIAVHGITNDRVAGEPRFHEIVGGFLDFI--RGAELVAHNASFDMSFINHEFSMLVP 119

Query: 115 KDPL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + P   D   ++D+L+IA+  HP  +N+L++LCKRYGI  + R+ HGALLD+ +L+DVY+
Sbjct: 120 QGPKVEDICTVLDSLAIAKFLHPGQKNNLDALCKRYGIDNTRRTYHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDKTIQT 230
            M   G Q  F    +E     +E+     I  L  ++P     R T +EL  H+K +  
Sbjct: 180 VMT--GGQTKFNLHADEG---SQEQG---GIIRLDSNRPSLKVVRATADELGNHEKRLDL 231

Query: 231 LGKNA--IW 237
           +GK+   +W
Sbjct: 232 VGKSGKCLW 240


>gi|288940138|ref|YP_003442378.1| DNA polymerase III subunit epsilon [Allochromatium vinosum DSM 180]
 gi|288895510|gb|ADC61346.1| DNA polymerase III, epsilon subunit [Allochromatium vinosum DSM
           180]
          Length = 240

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/236 (39%), Positives = 130/236 (55%), Gaps = 14/236 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +   RIIEIG VEL+D   T R F  +L P  R+   EA  +HGI
Sbjct: 1   MRQIVLDTETTGLEPREGHRIIEIGCVELVDRRPTGRNFHEYLNPE-RQIDAEAEAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE--LQRINKDP--LDPS 121
           ++ FL DKP F+       ++   + AE I HNA FDVGF++ E  L R  + P   D  
Sbjct: 60  SNAFLADKPRFAERAERLVEYL--RGAELIIHNAAFDVGFLDHEFGLWRGAEAPRIADLC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            + D+L +AR+ HP  RN L++LCKRY I  SHR+ HGALLD+ +L+DVY+ M  G   +
Sbjct: 118 TVTDSLLMARKLHPGQRNGLDALCKRYAIDNSHRTLHGALLDAEILADVYLAMTGGQVSL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
             G +        E       +   +R +    R T+ EL+ H   +     +AIW
Sbjct: 178 YLGGEGMNGSGVGEGPVHRGRLD-PERPRLRVVRATQTELEAHRVRL-----DAIW 227


>gi|332184121|gb|AEE26375.1| DNA polymerase III epsilon subunit [Francisella cf. novicida 3523]
          Length = 230

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 85/186 (45%), Positives = 113/186 (60%), Gaps = 11/186 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T  T   +  PN    +  AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRVTGNTLHFYCNPNYEVEAG-ALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121
           +EFL DKP F     E  DF   + AE I HNA FDV FIN EL  +  +       + +
Sbjct: 62  NEFLADKPLFEDKVDEMIDFL--KGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M   G Q 
Sbjct: 120 KIVDSLELARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 177

Query: 182 NFGFKT 187
           N   +T
Sbjct: 178 NLSLQT 183


>gi|56416800|ref|YP_153874.1| DNA polymerase III epsilon chain [Anaplasma marginale str. St.
           Maries]
 gi|222475164|ref|YP_002563580.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Florida]
 gi|254995002|ref|ZP_05277192.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Mississippi]
 gi|255003148|ref|ZP_05278112.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Puerto Rico]
 gi|255004274|ref|ZP_05279075.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Virginia]
 gi|56388032|gb|AAV86619.1| DNA polymerase III epsilon chain [Anaplasma marginale str. St.
           Maries]
 gi|222419301|gb|ACM49324.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Florida]
          Length = 232

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 92/242 (38%), Positives = 144/242 (59%), Gaps = 15/242 (6%)

Query: 6   KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R+IV D ETTGLD+ + DRIIEIG VEL+D+  T + F  ++ P  R     A K+HG
Sbjct: 2   RTREIVLDTETTGLDAASGDRIIEIGCVELVDFVMTGQVFHKYINPE-RDIPIAATKIHG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRI 123
           IT + +K+ P F+ +  +F +F   Q++  + HNA FD+ FI  E++RI K  L +P  +
Sbjct: 61  ITTDMVKNMPKFAEMADQFLNFV--QDSVLVIHNAGFDLKFIETEMERIGKTKLYNP--V 116

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +ARRK P     L++LCKR+ I+ S R  HGAL D+ LL+ VY++ + GG Q + 
Sbjct: 117 VDTLEVARRKFPGMPASLDALCKRFDISTSSRRFHGALKDATLLARVYVE-LCGGIQRSL 175

Query: 184 GFKTNE-DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           GF + +  +  +  K + P +       P    I+  EL  H ++I  + K+ IW+ Y+ 
Sbjct: 176 GFVSGDLTQSTRASKASKPVLQ-----APRAFTISDLELKLHAESISKM-KDPIWNMYLK 229

Query: 243 SN 244
           ++
Sbjct: 230 TS 231


>gi|240950342|ref|ZP_04754612.1| DNA polymerase III subunit epsilon [Actinobacillus minor NM305]
 gi|240295153|gb|EER45972.1| DNA polymerase III subunit epsilon [Actinobacillus minor NM305]
          Length = 253

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/216 (40%), Positives = 129/216 (59%), Gaps = 21/216 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M+ +   R++V D ETTG++          IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MLEQEIHRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKP+F+ I  EF  F   + AE + HNA FDVGF++ E   +  
Sbjct: 60  EEEAIKVHGITNEFLQDKPTFAEIVDEFVAFI--KGAELVIHNAPFDVGFMDHEFSFLAN 117

Query: 116 DP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P    +   + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCTVTDSLALARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
            MM GG QI            +EE    P + LL+ 
Sbjct: 178 -MMTGG-QIAL--------LAEEEHDENPQVDLLEE 203


>gi|165976701|ref|YP_001652294.1| DNA polymerase III epsilon chain [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876802|gb|ABY69850.1| DNA polymerase III epsilon chain [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 257

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 92/254 (36%), Positives = 142/254 (55%), Gaps = 22/254 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+D+P F+ +  EF +F   + AE I HNA FDV F++ E   +  
Sbjct: 60  EEEAIKVHGITNEFLQDRPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117

Query: 116 DP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P    +   + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKT---VPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
            MM GG     G    ED     E      +  I+  +    +   +++EE   H++ ++
Sbjct: 178 -MMTGGQLALLG---EEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLK 233

Query: 230 TLGK----NAIWDR 239
            + K    N IW R
Sbjct: 234 LIDKKSKGNCIWMR 247


>gi|261820459|ref|YP_003258565.1| DNA polymerase III subunit epsilon [Pectobacterium wasabiae WPP163]
 gi|261604472|gb|ACX86958.1| DNA polymerase III, epsilon subunit [Pectobacterium wasabiae
           WPP163]
          Length = 245

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/243 (36%), Positives = 144/243 (59%), Gaps = 20/243 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNI 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+++ I  +F DF   + AE + HNA FD+GF++ E + +N+D P   +
Sbjct: 66  HGISDEFLADKPTYADIADDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRDLPKTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKITDSLFMARKIFPGKRNSLDALCDRYLIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD--EHDKTIQTL---GKN 234
            + F      D   +++ +    I  + R +   T +  +E++   H++ +  +   G +
Sbjct: 184 SLTFSM----DGETQQQNENSETIQRIVRPQSALTVLYADEVELLAHEQRLDLIAKKGGS 239

Query: 235 AIW 237
            +W
Sbjct: 240 CLW 242


>gi|332162776|ref|YP_004299353.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606882|emb|CBY28380.1| DNA polymerase III epsilon subunit [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667006|gb|ADZ43650.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861137|emb|CBX71400.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica W22703]
          Length = 260

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 80/192 (41%), Positives = 124/192 (64%), Gaps = 11/192 (5%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+F+ I  EF +F   + AE + HNA FD+GF++ E + + +D P   +
Sbjct: 66  HGISDEFLADKPTFADIAPEFIEFI--RGAELVIHNAAFDIGFMDYEFRMLQQDIPKTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCTITDSLLLARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDR 191
            ++F  + ++ +
Sbjct: 184 SLSFSMEGDQSQ 195


>gi|251788641|ref|YP_003003362.1| DNA polymerase III subunit epsilon [Dickeya zeae Ech1591]
 gi|247537262|gb|ACT05883.1| DNA polymerase III, epsilon subunit [Dickeya zeae Ech1591]
          Length = 244

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/241 (37%), Positives = 142/241 (58%), Gaps = 16/241 (6%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYLRPD-RLVDPEAYNI 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+++ +  +F DF   + AE + HNA FD+GF++ E + + +D P   +
Sbjct: 66  HGISDEFLVDKPTYADVADDFLDFI--RGAELVIHNASFDIGFMDYEFRLLGRDIPKTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            + F  +  E +    + +T+  IS       +    + EEL  H++ +  +   G + +
Sbjct: 184 SLAFSME-GEGQQQAVQTETIQRISRPASALAVLY-ASDEELIAHEQRLDLIMKKGGSCL 241

Query: 237 W 237
           W
Sbjct: 242 W 242


>gi|254452968|ref|ZP_05066405.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           238]
 gi|198267374|gb|EDY91644.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           238]
          Length = 242

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/249 (38%), Positives = 143/249 (57%), Gaps = 24/249 (9%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + S+ DRI+EIGA+EL ++  T RT+  ++ P  R     A  +HGI
Sbjct: 1   MREIVLDTETTGFEPSEGDRIVEIGAIELHNHMPTGRTYHQYINPK-RTMPAGAFGIHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             +DKP F+ I   F DF  +  ++ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQTPTAGQVLLRDKPVFAEIAQAFVDFIGD--SKLVIHNAAFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +N+  L   + +DTL IAR+K P S   L++LC+R+GI  S+R+ HGALLDS +L++VY+
Sbjct: 118 VNRPLLPMGQSLDTLGIARKKFPGSPASLDALCRRFGIDNSNRTLHGALLDSEILAEVYL 177

Query: 173 KMMVGGSQ--INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           + ++GG Q  +  G +T  +       +  P +    R  PL  +I   E D H   I+ 
Sbjct: 178 E-LIGGRQPDLVMGDQTGSNAKNGGGAEWRPQL----RTTPLAPKIKAAEADAHAAFIKL 232

Query: 231 LGKNAIWDR 239
           LG NA+W++
Sbjct: 233 LGDNALWNK 241


>gi|197335831|ref|YP_002156764.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11]
 gi|197317321|gb|ACH66768.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11]
          Length = 223

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 87/216 (40%), Positives = 129/216 (59%), Gaps = 10/216 (4%)

Query: 25  RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFW 84
           RI+EIGAVE+++   T   F V++ P+ R    EA+ +HGITDEFL DKP +  I  EF 
Sbjct: 13  RIVEIGAVEIINRKLTGNHFHVYIKPD-RLIDLEAIDVHGITDEFLYDKPEYKDIHDEFL 71

Query: 85  DFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSRIIDTLSIARRKHPSSRNDL 141
           +F   + AE +AHNA FDVGF++ E  ++NK         +I DTL++A++  P  RN+L
Sbjct: 72  EFI--KGAELVAHNAPFDVGFMDYEFSKLNKLIGTTDQYCKITDTLAMAKKIFPGKRNNL 129

Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP 201
           + LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G + ++F    N     +E  K + 
Sbjct: 130 DVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLSFSSGDNSSDSDEETIKRLN 189

Query: 202 NISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           +     R      R T +EL+ H+K +  +G   +W
Sbjct: 190 S----GRKGLKVLRATADELEAHEKRLDIVGDACLW 221


>gi|271501671|ref|YP_003334697.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech586]
 gi|270345226|gb|ACZ77991.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech586]
          Length = 244

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/243 (37%), Positives = 144/243 (59%), Gaps = 20/243 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYLRPD-RLIDPEAYNV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+++ +  +F DF   + AE + HNA FD+GF++ E + + +D P   +
Sbjct: 66  HGISDEFLADKPTYAEVADDFIDFI--RGAELVIHNASFDIGFMDYEFRLLGRDIPKTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI--TKEELDEHDKTIQTL---GKN 234
            + F  +  E +    + +T+  IS   R     T +  + +EL  H++ +  +   G +
Sbjct: 184 SLAFSME-GESQQQTVQAETIQRIS---RPTSALTVLYASDDELVAHEQRLDLIMKKGGS 239

Query: 235 AIW 237
            +W
Sbjct: 240 CLW 242


>gi|187929152|ref|YP_001899639.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12J]
 gi|187726042|gb|ACD27207.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12J]
          Length = 242

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 78/174 (44%), Positives = 111/174 (63%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL++   DR+IEIG VE+++   T R    ++ P  R+    A+ +HGI
Sbjct: 1   MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T+EF+ DKP F+ I +E  D+   Q AE I HNA FD+GF++ E QR+         S  
Sbjct: 60  TNEFVADKPKFAEIVNEIRDYV--QGAEAIIHNAAFDLGFLDMEFQRLGLPAFREHLSGH 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL  AR+  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G
Sbjct: 118 IDTLREARQMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRG 171


>gi|299066469|emb|CBJ37657.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum CMR15]
          Length = 242

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 80/176 (45%), Positives = 112/176 (63%), Gaps = 10/176 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR+IEIG VEL++   T R    +  P  R+    A+ +HGI
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYFNPE-RQIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPS 121
           T+EF+ DKP F+ +  E  D+   Q AE I HNA FD+GF++ E +R+     ++ LD  
Sbjct: 60  TNEFVADKPKFAEVVDEIRDYV--QGAEAIIHNAAFDLGFLDMEFKRLGLPSFREHLDGH 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             IDTL  ARR  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G
Sbjct: 118 --IDTLLDARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRG 171


>gi|294085203|ref|YP_003551963.1| DNA polymerase III subunit epsilon [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664778|gb|ADE39879.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 255

 Score =  151 bits (382), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 77/180 (42%), Positives = 115/180 (63%), Gaps = 5/180 (2%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTG++ ++  RIIEIG +ELL +  T     +++ P  R+    A+K+HG+
Sbjct: 1   MREIALDTETTGINPRDGHRIIEIGCLELLHHLPTGNKLHIYINPE-REIDEGAVKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T  FL DKP F+ I  EF  F      + + HNA FD+GF+NAEL R+++  L   R +D
Sbjct: 60  TSAFLADKPLFADIVDEFLAFIGGD--QMVIHNASFDMGFLNAELARLDRPVLPMDRAVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR+K P ++ +L++LC+R+ I   HR  HGAL+D+ LL+ VYI+++ GG Q   G 
Sbjct: 118 TLMMARKKFPGAQANLDALCRRFEIDNGHRDLHGALIDADLLASVYIELL-GGKQPGLGL 176


>gi|194290095|ref|YP_002006002.1| DNA polymerase III subunit epsilon [Cupriavidus taiwanensis LMG
           19424]
 gi|193223930|emb|CAQ69939.1| DNA polymerase III epsilon subunit [Cupriavidus taiwanensis LMG
           19424]
          Length = 246

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/239 (38%), Positives = 134/239 (56%), Gaps = 15/239 (6%)

Query: 6   KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            MR+IV D ETTGL++   DR+IEIG VEL++   T R    ++ P  R     A+ +HG
Sbjct: 3   AMRQIVLDTETTGLNAATGDRLIEIGCVELMNRRLTGRHLHFYVNPE-RDIDEGAIAVHG 61

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSR 122
           IT EFL DKP F+ +  +  +F   Q+AE I HNA+FD+GF++ E Q +   P       
Sbjct: 62  ITVEFLADKPRFAEVVHDIREFV--QDAELIIHNAQFDLGFLDMEFQLLGLPPFRQHVGN 119

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDTL  AR+  P  RN L++LC+R GI+ +HR  HGALLD+ LL++VY+ M  G  Q +
Sbjct: 120 VIDTLREARQMFPGKRNSLDALCERLGISNAHRKLHGALLDAELLAEVYLAMTRG--QDS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237
               T +    ++   T  ++S L    P+  R T EE   H   ++ L    G   +W
Sbjct: 178 LVIDTLDGGSGQDGVVTTADLSRLT--LPVL-RATDEEQQAHLALLKGLDKASGGKTVW 233


>gi|58580665|ref|YP_199681.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84622598|ref|YP_449970.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|166710938|ref|ZP_02242145.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|58425259|gb|AAW74296.1| DNA polymerase III epsilon chain [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366538|dbj|BAE67696.1| DNA polymerase III epsilon chai [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 244

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 78/182 (42%), Positives = 114/182 (62%), Gaps = 7/182 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           T EFL DKP F  +  EF  + +   AE I HNA FD+GF++ EL  +       ++ + 
Sbjct: 60  TLEFLADKPLFGEVVEEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FG 184
           F 
Sbjct: 178 FA 179


>gi|294627921|ref|ZP_06706500.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666553|ref|ZP_06731794.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292597835|gb|EFF41993.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603697|gb|EFF47107.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 244

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 89/244 (36%), Positives = 133/244 (54%), Gaps = 22/244 (9%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           T EFL DKP F  +  EF  + +   AE I HNA FD+GF++ EL  +       ++ + 
Sbjct: 60  TLEFLADKPLFGEVVDEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLF-----TRITKEELDEHDKTIQTLGKN--- 234
           F             ++T     ++  D  L        +T  E   H+  +  L K    
Sbjct: 178 FASA-------DAGQQTDAASGMIAFDPALLLPRPRVAVTASESQAHEARLAQLRKKAGR 230

Query: 235 AIWD 238
           A+WD
Sbjct: 231 ALWD 234


>gi|54310042|ref|YP_131062.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9]
 gi|46914481|emb|CAG21260.1| Putative DNA polymerase III, epsilon subunit [Photobacterium
           profundum SS9]
          Length = 246

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 91/249 (36%), Positives = 141/249 (56%), Gaps = 22/249 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDR-----IIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R IV D ETTG++          IIEIGAVE+++   T  +F V++ P+ R   
Sbjct: 5   MKATNQRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEIINRKLTGNSFHVYIKPD-RTIE 63

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            EA+ +HGITDEFL  KP +  +  EF +F   + AE +AHNA FDVGF++ E +++N +
Sbjct: 64  VEAIGVHGITDEFLIGKPVYKEVHDEFLEFI--KGAELVAHNAPFDVGFMDYEFRKLNPN 121

Query: 117 ---PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 122 IGKTEDFCKVTDTLAMAKKIFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLL 181

Query: 174 MMVGGSQINFGFKTNEDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           M  G + +    +  EDR    E   K+      LLK         + +E++ H+  +  
Sbjct: 182 MTGGQTSLALSAE-REDRDAGTESEIKRIASGRKLLK-----VLHASADEIEAHESRLDI 235

Query: 231 LGK--NAIW 237
           + K  + +W
Sbjct: 236 ISKKSDVMW 244


>gi|120599049|ref|YP_963623.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1]
 gi|146292880|ref|YP_001183304.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32]
 gi|120559142|gb|ABM25069.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1]
 gi|145564570|gb|ABP75505.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32]
 gi|319426198|gb|ADV54272.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200]
          Length = 242

 Score =  151 bits (381), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 83/191 (43%), Positives = 119/191 (62%), Gaps = 12/191 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+IV D ETTG++  +       RIIEIG VE+++   T R F  ++ P G+  
Sbjct: 3   IISNASRQIVLDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-N 114
            PEA+ +HGITDE + ++P F  I  +F +F +   AE +AHNA FDV F++ E   + +
Sbjct: 62  DPEAIAVHGITDERVANEPRFHQIAQQFIEFID--GAEIVAHNANFDVSFMDHEFSMLPS 119

Query: 115 KDP--LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           K P  +D   I+DTL IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+
Sbjct: 120 KGPKTMDICDILDTLEIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINF 183
            M  G ++ N 
Sbjct: 180 IMTGGQTKFNL 190


>gi|117920808|ref|YP_870000.1| DNA polymerase III subunit epsilon [Shewanella sp. ANA-3]
 gi|117613140|gb|ABK48594.1| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3]
          Length = 242

 Score =  151 bits (381), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 82/193 (42%), Positives = 117/193 (60%), Gaps = 16/193 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++  +       RIIEIG VE+++   T R F  ++ P G+  
Sbjct: 3   IISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA+ +HGITDE + ++P F  I  EF DF +   AE +AHNA FDV F++ E   +  
Sbjct: 62  DPEAIAVHGITDERVANEPRFHQIAQEFIDFIS--GAEIVAHNANFDVSFMDHEFSLLQ- 118

Query: 116 DPLDP-----SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            PL P       I+D+L IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DV
Sbjct: 119 -PLGPKTSEICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRLYHGALLDAEILADV 177

Query: 171 YIKMMVGGSQINF 183
           Y+ M  G ++ N 
Sbjct: 178 YLAMTGGQTKFNL 190


>gi|304413386|ref|ZP_07394859.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola
           LSR1]
 gi|304284229|gb|EFL92622.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola
           LSR1]
          Length = 242

 Score =  151 bits (381), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 80/192 (41%), Positives = 120/192 (62%), Gaps = 11/192 (5%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTGL+      +  R+IEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGLNKVGAHYQGHRVIEIGAVEMVNRRLTGNHFHVYLKPD-RLVDPEAYAI 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL DKP+F+     F DF   + A+ I HNA FD+GF++ E + + ++      
Sbjct: 66  HGISDEFLADKPTFADTAKTFLDFI--RGADLIIHNASFDIGFLDYEFRLLEQNSAKIET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +AR+  P  RN+LN+LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCTITDSLLLARQLFPGKRNNLNALCDRYHIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDR 191
            ++F  +T++ +
Sbjct: 184 SLSFSMETDQQQ 195


>gi|254372921|ref|ZP_04988410.1| hypothetical protein FTCG_00492 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570648|gb|EDN36302.1| hypothetical protein FTCG_00492 [Francisella novicida GA99-3549]
 gi|332678259|gb|AEE87388.1| DNA polymerase III epsilon subunit [Francisella cf. novicida Fx1]
          Length = 230

 Score =  151 bits (381), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 85/186 (45%), Positives = 113/186 (60%), Gaps = 11/186 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T  T   +  PN    +  AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNTLHFYCNPNYEVEAG-ALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN EL  +  +       + +
Sbjct: 62  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELGLLRNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           RI+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M   G Q 
Sbjct: 120 RIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 177

Query: 182 NFGFKT 187
           N   +T
Sbjct: 178 NLSLQT 183


>gi|24374102|ref|NP_718145.1| DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1]
 gi|24348589|gb|AAN55589.1|AE015697_11 DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1]
          Length = 242

 Score =  151 bits (381), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 81/191 (42%), Positives = 117/191 (61%), Gaps = 12/191 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++  +       RIIEIG VE+++   T R +  ++ P G+  
Sbjct: 3   IISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQR 112
            PEA+ +HGITDE + ++P F  I  EF DF +   AE +AHNA FDV F++ E   LQ 
Sbjct: 62  DPEAIAVHGITDERVANEPRFHQIAQEFIDFIS--GAEIVAHNANFDVSFMDHEFSLLQP 119

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +     D   I+D+L IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+
Sbjct: 120 LGPKTRDICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINF 183
            M  G ++ N 
Sbjct: 180 SMTGGQTKFNL 190


>gi|295691552|ref|YP_003595245.1| DNA polymerase III subunit epsilon [Caulobacter segnis ATCC 21756]
 gi|295433455|gb|ADG12627.1| DNA polymerase III, epsilon subunit [Caulobacter segnis ATCC 21756]
          Length = 237

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 134/237 (56%), Gaps = 13/237 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTG D K  DR++EIG +E++D+  T R+F  + C   R    EA K+HG++
Sbjct: 3   REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEY-CDPLRDMPAEAEKVHGLS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             FL  KP F  I   F +F  +     +AHNA FD  F+N EL++  + P+   R +DT
Sbjct: 62  SAFLTGKPKFHEIADRFVEFVGDSVV--VAHNAAFDRQFVNFELEKCGRAPIREDRWVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LCKR+ I++  R KHGAL+D+HLL++VY+++  GG +     +
Sbjct: 120 LAMAKKRFPGMYNSLDALCKRFKISLESRDKHGALIDAHLLAEVYLELQ-GGKE-----R 173

Query: 187 TNEDRFFKEEKKTVPNI--SLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWDRY 240
             E     E       I  S   R +PL  R T  E + H   + + L   A+W ++
Sbjct: 174 ALELTHVVETLAVSAAIQGSYGSRPRPLAPRSTDAEREVHAAWVRKNLKDQALWIKF 230


>gi|307132179|ref|YP_003884195.1| DNA polymerase III subunit epsilon [Dickeya dadantii 3937]
 gi|306529708|gb|ADM99638.1| DNA polymerase III epsilon subunit [Dickeya dadantii 3937]
          Length = 244

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 80/187 (42%), Positives = 119/187 (63%), Gaps = 11/187 (5%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYLRPD-RLVDPEAYNV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP++  +  +F DF   + AE + HNA FD+GF++ E + + +D P   +
Sbjct: 66  HGISDEFLADKPTYGDVVDDFLDFI--RGAELVIHNATFDIGFMDYEFRLLKRDIPKTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCTITDSLQMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFK 186
            + F  +
Sbjct: 184 SLAFSME 190


>gi|254374374|ref|ZP_04989856.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548]
 gi|151572094|gb|EDN37748.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548]
          Length = 238

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 85/186 (45%), Positives = 113/186 (60%), Gaps = 11/186 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T  T   +  PN    +  AL +HG+T
Sbjct: 11  RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNTLHFYCNPNYEVEAG-ALAIHGLT 69

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN EL  +  +       + +
Sbjct: 70  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELGLLRNNKYGTLEQNVA 127

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           RI+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M   G Q 
Sbjct: 128 RIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 185

Query: 182 NFGFKT 187
           N   +T
Sbjct: 186 NLSLQT 191


>gi|73541877|ref|YP_296397.1| DNA polymerase III subunit epsilon [Ralstonia eutropha JMP134]
 gi|72119290|gb|AAZ61553.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
          Length = 240

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 111/175 (63%), Gaps = 6/175 (3%)

Query: 6   KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            MR+IV D ETTGL++   DR+IEIG VEL++   T R    ++ P  R     A+ +HG
Sbjct: 3   AMRQIVLDTETTGLNAATGDRLIEIGCVELVNRRLTGRHLHFYVNPE-RDIDEGAIAVHG 61

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSR 122
           IT EFL DKP F+ + +E  DF   Q+AE I HNA+FD+GF++ E + +   P       
Sbjct: 62  ITVEFLADKPKFAEVVNEVRDFV--QDAELIIHNAQFDLGFLDMEFRLLGLPPFREHVGS 119

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +IDTL  AR+  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G
Sbjct: 120 VIDTLLEARQMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRG 174


>gi|188578361|ref|YP_001915290.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188522813|gb|ACD60758.1| DNA polymerase III, epsilon subunit [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 244

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 78/182 (42%), Positives = 114/182 (62%), Gaps = 7/182 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           T EFL DKP F  +  EF  + +   AE I HNA FD+GF++ EL  +       ++ + 
Sbjct: 60  TLEFLADKPLFGDVVEEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FG 184
           F 
Sbjct: 178 FA 179


>gi|113970494|ref|YP_734287.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-4]
 gi|114047729|ref|YP_738279.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-7]
 gi|113885178|gb|ABI39230.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4]
 gi|113889171|gb|ABI43222.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7]
          Length = 242

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 81/191 (42%), Positives = 117/191 (61%), Gaps = 12/191 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++  +       RIIEIG VE+++   T R +  ++ P G+  
Sbjct: 3   IISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQR 112
            PEA+ +HGITDE + ++P F  I  EF DF +   AE +AHNA FDV F++ E   LQ 
Sbjct: 62  DPEAIAVHGITDERVANEPRFHQIAQEFIDFIS--GAEIVAHNANFDVSFMDHEFSLLQP 119

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +     D   I+D+L IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+
Sbjct: 120 LGPKTSDICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRLYHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINF 183
            M  G ++ N 
Sbjct: 180 AMTGGQTKFNL 190


>gi|78485275|ref|YP_391200.1| DNA polymerase III, epsilon subunit [Thiomicrospira crunogena
           XCL-2]
 gi|78363561|gb|ABB41526.1| DNA polymerase III, epsilon subunit [Thiomicrospira crunogena
           XCL-2]
          Length = 231

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 90/233 (38%), Positives = 138/233 (59%), Gaps = 16/233 (6%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTG D KN D+IIEIGAVEL+    T+  +  ++ P  R    +A+++HGI
Sbjct: 1   MRQILLDTETTGFDPKNGDKIIEIGAVELIKRKLTHNNYHQYIQPE-RDVPIDAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL----DPS 121
           T+EFL  KP F+ +  +F ++     AE I HNA FDVGFIN EL ++  +      D  
Sbjct: 60  TNEFLVGKPIFADVVDDFMEYV--AGAELIIHNAPFDVGFINQELSQLPNNKWGKIEDHC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            I D+L +AR+ +P  RN L++LCKR+ I  S+R+ HGALLDS +L+DVY+ M  G + +
Sbjct: 118 TITDSLKMARKAYPGQRNSLDALCKRFLIDNSNRTLHGALLDSEILADVYLAMTGGQTAL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGK 233
                 +E+    +  +    ++L  +  PL   + + EEL  H+  +Q + +
Sbjct: 178 ---ILADEEGSSSDASR----VNLNTQRAPLKVLKASAEELAAHNGKLQQISE 223


>gi|74317680|ref|YP_315420.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC
           25259]
 gi|74057175|gb|AAZ97615.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
           ATCC 25259]
          Length = 232

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 114/183 (62%), Gaps = 6/183 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGLD ++  RIIE+ AVE+++   T      ++ P+ R     A+++HGI
Sbjct: 1   MRQIILDTETTGLDPAQGHRIIEVAAVEMVNRRLTGNHLHRYVNPD-RDIDAGAMQVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T EFL+DKP F  I  EF DF +   AE I HNA FDVGF+N EL+ +    L      +
Sbjct: 60  TPEFLQDKPRFGDIAREFVDFID--GAELIIHNAPFDVGFLNMELRLLGMPLLATCCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL++A+  HP  RN+L++LCKRY +  + R+ HGALLD  LL+ VY+ +  G   ++ 
Sbjct: 118 TDTLAMAKALHPGQRNNLDALCKRYAVDNTARTLHGALLDCELLAAVYLALTRGQESLSI 177

Query: 184 GFK 186
           G +
Sbjct: 178 GLE 180


>gi|253996734|ref|YP_003048798.1| DNA polymerase III subunit epsilon [Methylotenera mobilis JLW8]
 gi|253983413|gb|ACT48271.1| DNA polymerase III, epsilon subunit [Methylotenera mobilis JLW8]
          Length = 227

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 92/238 (38%), Positives = 133/238 (55%), Gaps = 18/238 (7%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  ++  R+IEI AVE+++   T   F  +L P+ R   P A ++HGI
Sbjct: 1   MRQIFLDTETTGLYHAQGHRVIEIAAVEVVNRRLTKHHFHYYLNPD-RDIDPGAQEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           + EFL+DKP F+ I +E   F    +AE I HNA FDVGF+N EL  I +  ++   +++
Sbjct: 60  SLEFLQDKPRFADIANELITFI--ADAELIMHNAPFDVGFLNCELGLIGQKKVEEISAKV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL IA+   P  RN+L++LCK +GI  S R+ HGALLD+ LL+DVY+ M  G   +  
Sbjct: 118 TDTLKIAKEMRPGQRNNLDALCKYFGIDNSKRTLHGALLDAELLADVYMAMTRGQDSLMI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE-ELDEHDKTIQTLGK--NAIWD 238
                       E   V  +S      PL  ++    EL +H+  +  L K  N +W+
Sbjct: 178 ALDQP-----SHETVEVSAVS----HAPLQVKLANSTELADHEAYLAGLAKSGNCVWN 226


>gi|304320447|ref|YP_003854090.1| putative DNA polymerase III subunit epsilon and related
           3'-5'exonuclease [Parvularcula bermudensis HTCC2503]
 gi|303299349|gb|ADM08948.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Parvularcula bermudensis HTCC2503]
          Length = 245

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/245 (38%), Positives = 141/245 (57%), Gaps = 19/245 (7%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHG 64
           MR+IVFD ETTGLD     R++EIGAVE+++ + T RTF V++ P   ++ PEA  ++H 
Sbjct: 1   MRQIVFDTETTGLDPLDGHRVVEIGAVEMVNGALTGRTFHVYVNPE--RDMPEAAYRVHK 58

Query: 65  ITDEFLKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119
           ++ +FL DKP F   +I   F+ F   + A  +AHNA FD  F+   L  I   P    +
Sbjct: 59  LSSQFLADKPIFKDPAIGQAFYQFC--EGAVLVAHNASFDCKFMQHHLDEIGL-PWAWGE 115

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYIKMMVG 177
           P  I+DTL IAR++ P S + L++LC+R+GI ++ R    HGALLDS LL++VYI+ + G
Sbjct: 116 PGDIVDTLQIARKRFPGSPSSLDALCQRFGIDLTEREAQGHGALLDSRLLAEVYIE-LTG 174

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           G Q    F  ++    + + +  P     +R  P    +T EE   H   I  + K+ +W
Sbjct: 175 GRQGGLIFDPDQSVGGRRKARGEPA---RQRPGPRPQLLTDEEHAAHAALIGEM-KDPLW 230

Query: 238 DRYIS 242
            RY +
Sbjct: 231 ARYTA 235


>gi|21241847|ref|NP_641429.1| DNA polymerase III subunit epsilon [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107228|gb|AAM35965.1| DNA polymerase III epsilon chain [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 244

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 133/239 (55%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           T EFL DKP F  +  EF  + +   AE I HNA FD+GF++ EL  +       ++ + 
Sbjct: 60  TLEFLADKPLFGEVVDEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F       +          + +LL   +P    +T  E   H+  +  L K    A+WD
Sbjct: 178 FASADAGQQADAASGMIAFDPALLL-PRPRVA-VTASESQAHEARLAQLRKKAGRALWD 234


>gi|226939810|ref|YP_002794883.1| DnaQ [Laribacter hongkongensis HLHK9]
 gi|226714736|gb|ACO73874.1| DnaQ [Laribacter hongkongensis HLHK9]
          Length = 240

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/241 (35%), Positives = 134/241 (55%), Gaps = 19/241 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+ D ETTGLD ++ R+IE+  +E+++   T R   +++ P  R   P+A ++HGI+
Sbjct: 1   MRQIILDTETTGLDPQSHRLIEVAGLEMVNRKLTGRHLHLYIHPQ-RDIDPDAQRVHGIS 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRII 124
            + L+ KP F ++  E  DF   ++AE I HNA FD+GF+NAE  R+           +I
Sbjct: 60  LDMLEGKPVFKAVAGEIADFL--RDAELIIHNAAFDIGFLNAEFARVGLPATQKVAGNVI 117

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR   P  RN+L++LC R+ I  S+R+ HGAL+D  LL+DVY+ M  G   +   
Sbjct: 118 DTLAMAREIFPGKRNNLDALCDRFDIDRSNRTLHGALIDCELLADVYLAMTRGQESLEMA 177

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE-ELDEHDKTIQTLGKNA----IWDR 239
            + ++      E  T+     L   KPL  +   E E   H + ++ L K A    +W  
Sbjct: 178 IEPDQG-----EGGTL----RLGNRKPLVVQKASEAECAVHSRYLELLDKKAGGPCVWRD 228

Query: 240 Y 240
           Y
Sbjct: 229 Y 229


>gi|58584800|ref|YP_198373.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58419116|gb|AAW71131.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 231

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/241 (39%), Positives = 139/241 (57%), Gaps = 15/241 (6%)

Query: 4   KNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +NK+R+IV D ETTGLD     RIIEIG VEL++   T + F  +L P  R     + K+
Sbjct: 2   ENKLREIVLDTETTGLDIESGHRIIEIGCVELINRIPTGKVFHKYLNPE-RDIPYHSFKI 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI++EFL+DKP FS +  EF DF +      I HNA+FD+ F+N EL ++N   +   R
Sbjct: 61  HGISEEFLEDKPLFSDVVFEFLDFIS--GDILIIHNAEFDIKFLNMELGKLNARLISSDR 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+K   S   L++LCKR+ I++ +R  HGAL D+ LL+ VY+++  G     
Sbjct: 119 VLDTLPLARKKFVGSPASLSALCKRFDISLENRELHGALTDAGLLAKVYVELTGGLQTFL 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWDRY 240
           F  +  +D      +  V N++  +   P     + EE++EH K    LGK  N +W   
Sbjct: 179 FDNECKQDHNSAFIQHKVRNLT-CREHSP-----SNEEINEHRK---LLGKIDNPLWKER 229

Query: 241 I 241
           I
Sbjct: 230 I 230


>gi|330813374|ref|YP_004357613.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486469|gb|AEA80874.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 225

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 111/169 (65%), Gaps = 3/169 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M +I+ D ETTGL    D+IIEI  +EL +   T   F VF+ PN    S  A + HGI+
Sbjct: 1   MLEIILDTETTGLSFNTDKIIEIACIELENQIPTKNKFHVFINPN-MDISDGAYQTHGIS 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +FL+DKP F  I  EF +F   ++++ + HNA FD+ F+N ELQ ++ +PL   R++DT
Sbjct: 60  RDFLRDKPVFKDIAKEFLNFI--KDSKLVIHNADFDLAFLNKELQELDLEPLSKDRVVDT 117

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L +AR+K P S+  L++LCKR+ I  S R KH AL+D +LL++VYI+++
Sbjct: 118 LFLARQKFPGSQASLDALCKRFKINTSEREKHSALVDCNLLTEVYIELL 166


>gi|50122261|ref|YP_051428.1| DNA polymerase III subunit epsilon [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612787|emb|CAG76237.1| DNA polymerase III, epsilon chain [Pectobacterium atrosepticum
           SCRI1043]
          Length = 245

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/192 (41%), Positives = 123/192 (64%), Gaps = 11/192 (5%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNI 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+++ +  +F DF   + AE + HNA FD+GF++ E + +N++ P   +
Sbjct: 66  HGISDEFLADKPTYADVADDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRNIPKTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR+  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKITDSLFMARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDR 191
            + F  +    R
Sbjct: 184 SLTFSMEGEAQR 195


>gi|296115251|ref|ZP_06833892.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295978352|gb|EFG85089.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 226

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/183 (44%), Positives = 112/183 (61%), Gaps = 5/183 (2%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I+FD ETTGLD  N DR+IEI A+EL+    + R+F+V + P  R    EA ++HG T
Sbjct: 3   RSILFDTETTGLDPLNGDRVIEIAALELIGDLPSGRSFRVLIDPE-RDVPEEASRVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+ +P F+ I  EF  F  +   E IAHNA FD GF+NAE +R     L  +R++DT
Sbjct: 62  RADLEGQPKFAQIADEFLAFIGDD--ELIAHNAAFDFGFLNAEFRRAGLPELAMTRMVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L IAR + P   N L++LC+R+ I +S R+ H ALLD  LL++VYI++  GG Q   G  
Sbjct: 120 LQIARARFPGMPNSLDALCRRFSIDLSARTTHNALLDCKLLAEVYIELS-GGRQRGLGLS 178

Query: 187 TNE 189
             E
Sbjct: 179 VEE 181


>gi|190573031|ref|YP_001970876.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
           K279a]
 gi|190010953|emb|CAQ44562.1| putative DNA polymerase III, epsilon chain [Stenotrophomonas
           maltophilia K279a]
          Length = 243

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 131/239 (54%), Gaps = 13/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +RI+EIG VEL     T   +  ++ P+       A ++ G+
Sbjct: 1   MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQ-GAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122
           T EFL DKP F+ I  EF  F +   AE I HNA FD+GF++ EL  +        D   
Sbjct: 60  TLEFLDDKPEFAQIADEFLAFID--GAELIIHNAAFDLGFLDNELSLLGPQYGKITDRCT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDTL++AR + P  RN L++LCKR G+  SHR+ HG LLD+ +L DVYI +  G  +I 
Sbjct: 118 VIDTLAMARERFPGQRNSLDALCKRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238
           FG   ++        +      LL R + +    T  EL+ H   ++ L K   +A+WD
Sbjct: 178 FGLGDDDGGGAGAALQAFDTSKLLPRPRVV---ATPSELEAHAARLERLRKKAGHALWD 233


>gi|293392715|ref|ZP_06637034.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera
           DSM 4582]
 gi|291424832|gb|EFE98042.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera
           DSM 4582]
          Length = 245

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/244 (36%), Positives = 138/244 (56%), Gaps = 22/244 (9%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R + V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+F  I  EF +F   +  E + HNA FD+GF++ E + + +D P   +
Sbjct: 66  HGISDEFLADKPTFDQIADEFIEFI--RGGELVIHNAAFDIGFMDHEFRMLQQDIPKTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 124 FCAITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAMT--GG 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI--TKEELDEHDKTIQTL----GK 233
           Q    F+   D    ++  +  +I  + R       I  + +E+  H+  +  +    G 
Sbjct: 182 QTTMAFQMEGD---TQQSDSTQDIQRIARPATSMKVIYASDDEVVAHESRLDLVAKKGGG 238

Query: 234 NAIW 237
           N +W
Sbjct: 239 NCLW 242


>gi|269958788|ref|YP_003328576.1| DNA polymerase III, epsilon subunit [Anaplasma centrale str.
           Israel]
 gi|269848618|gb|ACZ49262.1| DNA polymerase III, epsilon subunit [Anaplasma centrale str.
           Israel]
          Length = 232

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/242 (38%), Positives = 143/242 (59%), Gaps = 15/242 (6%)

Query: 6   KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R+IV D ETTGLD+ + DRIIEIG VEL+D+  T + F  ++ P  R     A K+HG
Sbjct: 2   RTREIVLDTETTGLDAASGDRIIEIGCVELVDFVMTGQVFHKYINPE-RDIPIAATKIHG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRI 123
           IT + +K+ P F+ +  +F +F   Q++  + HNA FD+ FI  E++RI K  L +P  +
Sbjct: 61  ITTDMVKNMPKFAEMADQFLNFV--QDSVLVIHNAGFDLKFIETEMERIGKTKLYNP--V 116

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +ARRK P     L++LCKR+ I+ S R  HGAL D+ LL+ VY++ + GG Q + 
Sbjct: 117 VDTLEVARRKFPGMPASLDALCKRFDISTSSRRFHGALKDATLLARVYVE-LCGGIQRSL 175

Query: 184 GFKTNE-DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           GF   E ++  KE   + P +       P    I+  E   H ++I  + K+ IW+ Y+ 
Sbjct: 176 GFVDGELNQSTKENNASKPVLQ-----APRTFTISDLEHKLHMESISKM-KDPIWNMYLK 229

Query: 243 SN 244
           ++
Sbjct: 230 TS 231


>gi|113868435|ref|YP_726924.1| DNA polymerase III subunit epsilon [Ralstonia eutropha H16]
 gi|113527211|emb|CAJ93556.1| DNA polymerase III epsilon subunit [Ralstonia eutropha H16]
          Length = 246

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 109/175 (62%), Gaps = 6/175 (3%)

Query: 6   KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            MR+IV D ETTGL +   DR+IEIG VEL++   T R    ++ P  R     A+ +HG
Sbjct: 3   AMRQIVLDTETTGLSAATGDRLIEIGCVELMNRRLTGRHLHFYVNPE-RDIDEGAIAVHG 61

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSR 122
           IT EFL DKP F+ + ++  +F   Q+AE I HNA FD+GF++ E Q +   P       
Sbjct: 62  ITVEFLADKPRFAEVVNDIREFI--QDAELIIHNAPFDLGFLDMEFQLLGLPPFRQHAGN 119

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +IDTL  AR+  P  RN L++LC R GI+ +HR+ HGALLD+ LL++VY+ M  G
Sbjct: 120 VIDTLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRG 174


>gi|114328806|ref|YP_745963.1| DNA polymerase III subunit epsilon [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316980|gb|ABI63040.1| DNA polymerase III, epsilon chain [Granulibacter bethesdensis
           CGDNIH1]
          Length = 225

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/179 (44%), Positives = 107/179 (59%), Gaps = 5/179 (2%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++FD ETTG D    DRI+EI A+EL +   T  TF   + P  R    EA ++HG T
Sbjct: 3   RSVLFDTETTGFDPLTGDRILEIAALELFNDLPTGNTFHTLVDPC-RDVPEEATRVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E L+ KP F+ I  +   FF       IAHNA FD  F+NAE  R+ K  LDP+R+IDT
Sbjct: 62  AEMLRGKPLFADIVEDLLAFFGRD--PLIAHNAPFDFNFLNAEFARLGKPKLDPARMIDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           L +A+ + P   N L++LC+R+ I +S R+ H ALLD  LL++VYI+ + GG Q   G 
Sbjct: 120 LVMAKARFPGMPNSLDALCRRFSIDLSQRTTHNALLDCKLLAEVYIE-LTGGRQRGLGL 177


>gi|308185776|ref|YP_003929907.1| DNA polymerase III epsilon subunit [Pantoea vagans C9-1]
 gi|308056286|gb|ADO08458.1| DNA polymerase III epsilon subunit [Pantoea vagans C9-1]
          Length = 243

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 113/178 (63%), Gaps = 11/178 (6%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T   F ++L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+FS I  EF D+   + AE + HNA FD+GF++ E  ++N+       
Sbjct: 66  HGIADEFLADKPAFSEIADEFLDYI--RGAELVIHNAPFDIGFMDYEFSKLNRGIEKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +I D+L++ARR  P  RN L++LC RY I  + R+ HGALLD+ +L++V++ M  G
Sbjct: 124 FCKITDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAEILAEVFLTMTGG 181


>gi|241668417|ref|ZP_04755995.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876950|ref|ZP_05249660.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842971|gb|EET21385.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 230

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 114/189 (60%), Gaps = 11/189 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN    +  AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRKVTGNNLHFYCNPNYEVEAG-ALAVHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-----S 121
           +EFL DKPSF     +  DF   + AE I HNA FDV FIN EL  +  +         +
Sbjct: 62  NEFLADKPSFEENVDQMIDFL--RGAEIIIHNAAFDVPFINWELGLLKNNKYGTLEQHVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M   G Q 
Sbjct: 120 KIVDSLELARKKHPLQKNNLDALCKRYHIRNDHRTFHGALLDSELLADVYLAMT--GGQT 177

Query: 182 NFGFKTNED 190
           N   +T ++
Sbjct: 178 NLVLQTTKN 186


>gi|270263405|ref|ZP_06191674.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13]
 gi|270042289|gb|EFA15384.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13]
          Length = 246

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/191 (43%), Positives = 118/191 (61%), Gaps = 13/191 (6%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R + V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+F  I  EF DF   +  E + HNA FD+GF++ E + + K  P   +
Sbjct: 66  HGISDEFLADKPTFDQIADEFIDFI--RGGELVIHNASFDIGFMDHEFRMLQKGLPKTDT 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCGRYEIDNSKRTLHGALLDAEILAEVYLAMT--GG 181

Query: 180 QINFGFKTNED 190
           Q +  F+   D
Sbjct: 182 QTSMAFQMEGD 192


>gi|330994285|ref|ZP_08318213.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1]
 gi|329758752|gb|EGG75268.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1]
          Length = 226

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/174 (45%), Positives = 109/174 (62%), Gaps = 5/174 (2%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I+FD ETTGLD  K DR+IEI A+EL+    T R F V + P  R    EA ++HG T
Sbjct: 3   RTILFDTETTGLDPLKGDRVIEIAALELVGDLPTGRNFHVLIDPE-RDVPEEASRVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+ KP F+ + S F +F  +     IAHNA+FD GF+NAEL R  +  LD  R++DT
Sbjct: 62  RADLEGKPKFAEVASGFLEFVGDD--PLIAHNARFDFGFLNAELARAGQPVLDMGRMVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           L +AR + P   N L++LC+R+ I +S R+ H ALLD  LL+ VY++ + GG Q
Sbjct: 120 LDMARERFPGMPNSLDALCRRFSIDLSERTTHNALLDCRLLAAVYLE-LTGGRQ 172


>gi|114777499|ref|ZP_01452496.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114552281|gb|EAU54783.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 300

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/249 (39%), Positives = 135/249 (54%), Gaps = 26/249 (10%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLD---YSKTNRTFQVFLCPNGRKNSP-EALK 61
           MR I+ D ETTGL   N DR++EIGA+E+L+    S     F  ++ P   +N P E ++
Sbjct: 53  MRLIMLDTETTGLSPLNGDRMVEIGAIEVLNRKVLSGDKHVFHRYINPE--RNIPDEVVR 110

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDP 120
           +HGI +  +KD+P+F  I  EF DF   + A  + HNA FD+GFI  EL RIN  P +  
Sbjct: 111 IHGIDNAKVKDQPTFREIAQEFLDFI--EGATLVIHNAPFDLGFIMNEL-RINNFPEIGH 167

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++IDTL  AR KHP  RN+L++LC RY I   HR  HGALLDS LL++VY+  M GG Q
Sbjct: 168 MQVIDTLVFAREKHPHQRNNLDALCDRYNIERGHRELHGALLDSELLAEVYLG-MTGGRQ 226

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK--------EELDEHDKTIQTL- 231
            + G      R        +P  S  + +K    RI +        E+L  H   ++ + 
Sbjct: 227 FSLGMDAT--RLPASAFVQLPETSRGRSEKAETARIMRRKALHIPEEDLSAHHLMLKRIH 284

Query: 232 ---GKNAIW 237
              G   IW
Sbjct: 285 KESGGQCIW 293


>gi|304395367|ref|ZP_07377250.1| DNA polymerase III, epsilon subunit [Pantoea sp. aB]
 gi|304356661|gb|EFM21025.1| DNA polymerase III, epsilon subunit [Pantoea sp. aB]
          Length = 243

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 113/178 (63%), Gaps = 11/178 (6%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T   F ++L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+FS I  EF D+   + AE + HNA FD+GF++ E  ++N+       
Sbjct: 66  HGIADEFLADKPAFSDIADEFLDYI--RGAELVIHNAPFDIGFMDYEFSKLNRGIEKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +I D+L++ARR  P  RN L++LC RY I  + R+ HGALLD+ +L++V++ M  G
Sbjct: 124 FCKITDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAEILAEVFLTMTGG 181


>gi|146329568|ref|YP_001209798.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus
           VCS1703A]
 gi|146233038|gb|ABQ14016.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus
           VCS1703A]
          Length = 233

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/185 (43%), Positives = 114/185 (61%), Gaps = 10/185 (5%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R ++FD ETTG++ ++D      RIIEIG VEL+D   T   F  +L P  +   P+A K
Sbjct: 4   RSVIFDTETTGMNFESDNKAEGHRIIEIGCVELIDRVPTEHYFHCYLNPE-QPVDPQAFK 62

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--D 119
           +HGI+DEFL DKP F  +  EF  +    + E +AHN  FD  FI+ ELQ    D    D
Sbjct: 63  VHGISDEFLADKPFFKDVLPEFEAYLASAD-ELVAHNIAFDRQFIDRELQLAGCDYRLGD 121

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              ++D+L IAR K   +RN+L++LCKR+G+  + R  HGALLD+ LL++VY+K+  G S
Sbjct: 122 KFTLVDSLKIAREKFAGARNNLDALCKRFGVDNTGRELHGALLDAQLLAEVYLKLTGGQS 181

Query: 180 QINFG 184
            ++F 
Sbjct: 182 DLSFA 186


>gi|148555737|ref|YP_001263319.1| DNA polymerase III subunit epsilon [Sphingomonas wittichii RW1]
 gi|148500927|gb|ABQ69181.1| DNA polymerase III, epsilon subunit [Sphingomonas wittichii RW1]
          Length = 234

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/229 (39%), Positives = 134/229 (58%), Gaps = 10/229 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGL+ +  DR++EIG VEL++  +T  +F  +  P  R    EA ++HG+
Sbjct: 1   MREIVFDTETTGLNPATGDRLVEIGCVELVNRVETGNSFHCYFNPQ-RSMPFEAEQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++ FL DKP F+    E   F    +A  +AHNA FD GF+N EL    +  +D  R++D
Sbjct: 60  SERFLSDKPLFADKVEELLAFIG--DAPLVAHNASFDFGFLNWELGACGRSIVDMGRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IAR+ HP +++ L++LC RYGI  SHR KHGALLD+ LL+ +Y++ + GG QI    
Sbjct: 118 TLQIARKMHPGAKHSLDALCSRYGIDRSHRVKHGALLDAQLLAQLYVE-LTGGRQIGLSM 176

Query: 186 KTNEDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
                         + TV     ++  +P F   ++EEL+ H   ++ L
Sbjct: 177 GEAVVEEVVVVATPRATVAASRTIRAIRPHFA--SEEELERHKAFVEKL 223


>gi|167010822|ref|ZP_02275753.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 230

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/186 (45%), Positives = 112/186 (60%), Gaps = 11/186 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  K    AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YKVEAGALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN EL  +  +       + +
Sbjct: 62  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M   G Q 
Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 177

Query: 182 NFGFKT 187
           N   +T
Sbjct: 178 NLSLQT 183


>gi|325578763|ref|ZP_08148810.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159587|gb|EGC71719.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 253

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/184 (42%), Positives = 116/184 (63%), Gaps = 10/184 (5%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ P+ R   P+A
Sbjct: 3   NPDRQIVLDTETTGMNQIGAHYEGHCIIEIGAVEMINRKYTGNNFHIYIKPD-RLVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--P 117
           +K+HGITDE L DKP F +I  +F ++   + AE + HNA FDVGF++ E +++  D   
Sbjct: 62  IKVHGITDEMLADKPDFKTIAQDFIEYI--RGAELLIHNAPFDVGFMDYEFRKLGLDIKT 119

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  RN L++LC R GI  S R+ HGALLD+ +L+DVY+ M  G
Sbjct: 120 TDICLVTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLSMTGG 179

Query: 178 GSQI 181
            + +
Sbjct: 180 QTSL 183


>gi|300715435|ref|YP_003740238.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661]
 gi|299061271|emb|CAX58380.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661]
          Length = 244

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 79/199 (39%), Positives = 123/199 (61%), Gaps = 11/199 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   + V+L P+ R  
Sbjct: 1   MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNYHVYLKPD-RLV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI DEFL DKP+F+ I   F ++ +   AE + HNA FD+GF++ E  ++ +
Sbjct: 60  DPEAFGVHGIADEFLADKPTFADIADGFLEYID--GAELVIHNASFDIGFMDYEFAKLGR 117

Query: 116 D-PLDPS--RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + P   +  RI D+L++AR+  P  RN L++LC RY I  + R+ HGALLDS +L++V++
Sbjct: 118 NIPKTETFCRITDSLAMARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDSEILAEVFL 177

Query: 173 KMMVGGSQINFGFKTNEDR 191
            M  G + + F  + ++ +
Sbjct: 178 AMTGGQTLLKFSMEGDQQQ 196


>gi|307261758|ref|ZP_07543424.1| hypothetical protein appser12_13170 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868576|gb|EFN00387.1| hypothetical protein appser12_13170 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 248

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/245 (37%), Positives = 137/245 (55%), Gaps = 22/245 (8%)

Query: 10  IVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+   EA+K+HG
Sbjct: 1   MVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVDEEAIKVHG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPS 121
           IT+EFL+DKP F+ +  EF +F   + AE I HNA FDV F++ E   +   P    +  
Sbjct: 60  ITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLGNPPPKTAEMC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++ MM GG   
Sbjct: 118 SVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLA 176

Query: 182 NFGFKTNEDRFFKEEKKT---VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----N 234
             G    ED     E      +  I+  +    +   +++EE   H++ ++ + K    N
Sbjct: 177 LLG---EEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGN 233

Query: 235 AIWDR 239
            IW R
Sbjct: 234 CIWMR 238


>gi|169656602|ref|YP_001428489.2| DNA polymerase III, subunit epsilon [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290954177|ref|ZP_06558798.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312420|ref|ZP_06803198.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|164551670|gb|ABU61533.2| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 238

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/186 (45%), Positives = 112/186 (60%), Gaps = 11/186 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  K    AL +HG+T
Sbjct: 11  RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YKVEAGALAIHGLT 69

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN EL  +  +       + +
Sbjct: 70  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 127

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M   G Q 
Sbjct: 128 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 185

Query: 182 NFGFKT 187
           N   +T
Sbjct: 186 NLSLQT 191


>gi|301155941|emb|CBW15411.1| DNA polymerase III epsilon subunit [Haemophilus parainfluenzae
           T3T1]
          Length = 253

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/184 (42%), Positives = 116/184 (63%), Gaps = 10/184 (5%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ P+ R   P+A
Sbjct: 3   NPDRQIVLDTETTGMNQIGAHYEGHCIIEIGAVEMINRKYTGNNFHIYIKPD-RLVDPDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--P 117
           +K+HGITDE L DKP F +I  +F ++   + AE + HNA FDVGF++ E +++  D   
Sbjct: 62  IKVHGITDEMLADKPDFKTIAQDFIEYI--RGAELLIHNAPFDVGFMDYEFRKLGLDIKT 119

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   + DTL +AR+ +P  RN L++LC R GI  S R+ HGALLD+ +L+DVY+ M  G
Sbjct: 120 TDICLVTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLSMTGG 179

Query: 178 GSQI 181
            + +
Sbjct: 180 QTSL 183


>gi|89256347|ref|YP_513709.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314792|ref|YP_763515.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|254367683|ref|ZP_04983704.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|254369321|ref|ZP_04985333.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|89144178|emb|CAJ79442.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129691|gb|ABI82878.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253494|gb|EBA52588.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|157122271|gb|EDO66411.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 238

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/186 (45%), Positives = 112/186 (60%), Gaps = 11/186 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  K    AL +HG+T
Sbjct: 11  RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YKVEAGALAIHGLT 69

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN EL  +  +       + +
Sbjct: 70  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 127

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M   G Q 
Sbjct: 128 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 185

Query: 182 NFGFKT 187
           N   +T
Sbjct: 186 NLSLQT 191


>gi|326405243|ref|YP_004285325.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
 gi|325052105|dbj|BAJ82443.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
          Length = 235

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 134/241 (55%), Gaps = 15/241 (6%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++FD ETTGL+    DR+IE+ A+EL +   T + F   + P  R    EA ++HG+T
Sbjct: 3   RAVLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGKVFHTLIDPE-RDIPAEASRVHGMT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +  KP F+ I +E  +FF E     +AHNA FD GF++AE  RI +  LD +R+IDT
Sbjct: 62  SADVAGKPKFAEIAAELLEFFAEDP--LVAHNAPFDFGFLDAEFARIGRAALDRARMIDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LC+R+ I +S R+ H ALLD  LL++VY++ + GG Q      
Sbjct: 120 LALAKQRFPGMPNSLDALCRRFDIDLSARTTHNALLDCKLLAEVYVE-LTGGRQRGLDLA 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW--DRYISSN 244
                   E +   P     +  +P+    +  EL  H+  I+ L K  +W  D+   ++
Sbjct: 179 AESTIRLVEYRSEGP-----RTPRPIVA--SAAELAAHEAFIEKL-KEPVWRLDQAAPTD 230

Query: 245 Q 245
           Q
Sbjct: 231 Q 231


>gi|307250533|ref|ZP_07532477.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857426|gb|EFM89538.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 248

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/245 (37%), Positives = 137/245 (55%), Gaps = 22/245 (8%)

Query: 10  IVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+   EA+K+HG
Sbjct: 1   MVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVEEEAIKVHG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPS 121
           IT+EFL+DKP F+ +  EF +F   + AE I HNA FDV F++ E   +   P    +  
Sbjct: 60  ITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++ MM GG   
Sbjct: 118 SVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLA 176

Query: 182 NFGFKTNEDRFFKEEKKT---VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----N 234
             G    ED     E      +  I+  +    +   +++EE   H++ ++ + K    N
Sbjct: 177 LLG---EEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGN 233

Query: 235 AIWDR 239
            IW R
Sbjct: 234 CIWMR 238


>gi|24987377|pdb|1J53|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The
           Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 8.5
 gi|24987378|pdb|1J54|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The
           Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 5.8
 gi|119390109|pdb|2IDO|A Chain A, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading
           Complex
 gi|119390111|pdb|2IDO|C Chain C, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading
           Complex
          Length = 186

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 11/182 (6%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QI 181
            +
Sbjct: 184 SM 185


>gi|145579465|pdb|2GUI|A Chain A, Structure And Function Of Cyclized Versions Of The
           Proofread Exonuclease Subunit Of E. Coli Dna Polymerase
           Iii
          Length = 194

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 11/182 (6%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QI 181
            +
Sbjct: 187 SM 188


>gi|145589210|ref|YP_001155807.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047616|gb|ABP34243.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 236

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 76/174 (43%), Positives = 112/174 (64%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+ +  DR+IEIG VE++D   T+RTF  ++ P  R     A  +HG+
Sbjct: 1   MRQVILDTETTGLNPATGDRVIEIGCVEVIDRRLTDRTFHYYINPE-RDIDAGAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           + EFL DKP F +I  +  +F +   AE + HNA FD+GF++ E   + + P     S++
Sbjct: 60  SREFLSDKPVFGNIAEQLIEFVD--GAEIVIHNAAFDLGFLDNEFALLKRPPFRGLASKV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL  AR+  P  RN L++LC+R+ I+  HR+ HGALLD+ LL++VYI M  G
Sbjct: 118 IDTLLDARQMFPGKRNSLDALCERFSISNKHRTLHGALLDAQLLAEVYIAMTRG 171


>gi|157369157|ref|YP_001477146.1| DNA polymerase III subunit epsilon [Serratia proteamaculans 568]
 gi|157320921|gb|ABV40018.1| DNA polymerase III, epsilon subunit [Serratia proteamaculans 568]
          Length = 246

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 81/191 (42%), Positives = 119/191 (62%), Gaps = 13/191 (6%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGA+E+++   T R + V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGALEVINRRPTGRHYHVYIKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+F+ I  EF DF   +  E + HNA FD+GF++ E + + +  P   +
Sbjct: 66  HGISDEFLADKPTFAQIADEFIDFI--RGGELVIHNAAFDIGFMDHEFRMLQQGIPKTDT 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M   G 
Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAMT--GG 181

Query: 180 QINFGFKTNED 190
           Q +  F+   D
Sbjct: 182 QTSMAFQMEGD 192


>gi|307257347|ref|ZP_07539117.1| hypothetical protein appser10_13450 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864197|gb|EFM96110.1| hypothetical protein appser10_13450 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 248

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/245 (37%), Positives = 137/245 (55%), Gaps = 22/245 (8%)

Query: 10  IVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+   EA+K+HG
Sbjct: 1   MVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVDEEAIKVHG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPS 121
           IT+EFL+DKP F+ +  EF +F   + AE I HNA FDV F++ E   +   P    +  
Sbjct: 60  ITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++ MM GG   
Sbjct: 118 SVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLA 176

Query: 182 NFGFKTNEDRFFKEEKKT---VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----N 234
             G    ED     E      +  I+  +    +   +++EE   H++ ++ + K    N
Sbjct: 177 LLG---EEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGN 233

Query: 235 AIWDR 239
            IW R
Sbjct: 234 CIWMR 238


>gi|320538891|ref|ZP_08038567.1| DNA polymerase III epsilon subunit [Serratia symbiotica str.
           Tucson]
 gi|320031051|gb|EFW13054.1| DNA polymerase III epsilon subunit [Serratia symbiotica str.
           Tucson]
          Length = 247

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 116/184 (63%), Gaps = 11/184 (5%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R + V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+F  I  EF DF   +  E + HNA FD+GF++ E + + +  P   +
Sbjct: 66  HGISDEFLADKPTFDQIADEFLDFI--RGGELVIHNAAFDIGFMDHEFRLLQQGIPKTET 123

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINF 183
            + F
Sbjct: 184 SMTF 187


>gi|254419681|ref|ZP_05033405.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3]
 gi|196185858|gb|EDX80834.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3]
          Length = 241

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 86/235 (36%), Positives = 133/235 (56%), Gaps = 7/235 (2%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG D K  DR+IE+G +E+ D   T RTF  F+ P  R   P+A+++HGIT
Sbjct: 3   REIVLDTETTGFDPKTGDRLIEVGCIEIQDLLPTGRTFHRFVNPE-RLIPPDAIRVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +KD P F  I  +  +F    +A  IAHNA FD  FI+ E +   +     +R IDT
Sbjct: 62  DDKVKDAPKFHEIADDLIEFIG--DAPMIAHNAGFDRNFIDFEYKLCGRPITGETRWIDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +A+ + P   N L++LCKR+ +++  R+ HGAL+D+ LL++VY+++  GG +      
Sbjct: 120 LKLAQARFPGMPNSLDALCKRFKVSLVERTLHGALIDARLLAEVYLELR-GGKERVLDL- 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWDRY 240
           ++     +     VP  +   R +PL  R + EE   H   + + L   A+W+ Y
Sbjct: 178 SSAPVAGRSAGVAVPTAAYGPRPQPLALRSSPEEQAAHIAFLAKALKDRALWEAY 232


>gi|288956846|ref|YP_003447187.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
 gi|288909154|dbj|BAI70643.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
          Length = 227

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 79/181 (43%), Positives = 118/181 (65%), Gaps = 7/181 (3%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG    +  R++EIG +EL+++  T   F V+L P  R   PEA  +HG+
Sbjct: 1   MREIVLDTETTGFKPEEGHRLVEIGCIELVNHLATGERFHVYLNPE-RDMPPEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RII 124
           ++EFL DKP F+ + ++F  F    ++  + HNA FD+ F+N EL +I   P+ P  R I
Sbjct: 60  SEEFLADKPLFNDVAADFVAFIG--DSPLVIHNAAFDMHFLNWEL-KIAGYPVMPKDRAI 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +AR+K P S   L++LCKR+G+  S+R+ HGALLD+ LL++VY++++ GG Q    
Sbjct: 117 DTLLMARQKFPGSPATLDALCKRFGVDNSNRTLHGALLDAQLLAEVYLELL-GGRQTGLS 175

Query: 185 F 185
           F
Sbjct: 176 F 176


>gi|71892007|ref|YP_277737.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796113|gb|AAZ40864.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 249

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 84/190 (44%), Positives = 123/190 (64%), Gaps = 14/190 (7%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N +R+IV D ETTG++      +  R+IEIGAVE+++   T+ TF V+L PN R    EA
Sbjct: 4   NIIRQIVLDTETTGMNKFGPHYEGHRVIEIGAVEIINRHLTDNTFHVYLKPN-RMIDIEA 62

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDP 117
           +++HGI+D+FLK+KP FS I +EF  F   + +E I HNA FD+GF+N EL+  + N   
Sbjct: 63  IQVHGISDQFLKNKPIFSEIINEFLTFI--RGSELIIHNASFDLGFLNQELRICKANSKK 120

Query: 118 LDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK-HGALLDSHLLSDVYIKMM 175
           ++    +ID+L +AR+K P  RN L++LC+RY I   +R   H ALLD+ LL++V++ M 
Sbjct: 121 IESYCTVIDSLKLARKKFPGQRNSLDALCERYSINNGNRRNLHSALLDARLLANVFLSM- 179

Query: 176 VGGSQINFGF 185
             G QI   F
Sbjct: 180 -SGGQIKMKF 188


>gi|54114497|gb|AAV29882.1| NT02FT1179 [synthetic construct]
          Length = 230

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 11/186 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN    +  AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYEVEAG-ALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN EL  +  +       + +
Sbjct: 62  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M   G Q 
Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 177

Query: 182 NFGFKT 187
           N   +T
Sbjct: 178 NLSLQT 183


>gi|56707679|ref|YP_169575.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670150|ref|YP_666707.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134301975|ref|YP_001121944.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|224456748|ref|ZP_03665221.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370187|ref|ZP_04986193.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874491|ref|ZP_05247201.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604171|emb|CAG45181.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320483|emb|CAL08564.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134049752|gb|ABO46823.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151568431|gb|EDN34085.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840490|gb|EET18926.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158843|gb|ADA78234.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 230

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 11/186 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN    +  AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYEVEAG-ALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN EL  +  +       + +
Sbjct: 62  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M   G Q 
Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 177

Query: 182 NFGFKT 187
           N   +T
Sbjct: 178 NLSLQT 183


>gi|170726953|ref|YP_001760979.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908]
 gi|169812300|gb|ACA86884.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908]
          Length = 242

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 91/241 (37%), Positives = 137/241 (56%), Gaps = 20/241 (8%)

Query: 8   RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+I+ D ETTG++          RIIEIG VE+++   T R +  ++ P  +    EA++
Sbjct: 9   RQIILDTETTGMNQGAGAIFLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QIIDEEAIE 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPL 118
           +HGIT+EF+  KP F+ +   F +F +   AE +AHNA FDV F++ E   LQ +     
Sbjct: 68  VHGITNEFVAHKPKFAEVAQSFIEFID--GAEIVAHNANFDVSFMDHEFSLLQPVGPKTA 125

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D   I+DTL IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+ MM GG
Sbjct: 126 DICPILDTLEIAKFLHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILADVYL-MMTGG 184

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--I 236
            Q  F   + ++     E   +  +S   R+K      T +EL  H++ +  + K+   I
Sbjct: 185 -QTKFNLSSEKE---GSESGGIRRLS-QSRNKLKVITATADELAMHEERLNLVAKSGQCI 239

Query: 237 W 237
           W
Sbjct: 240 W 240


>gi|118497560|ref|YP_898610.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           novicida U112]
 gi|195536256|ref|ZP_03079263.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|118423466|gb|ABK89856.1| DNA polymerase III, epsilon subunit [Francisella novicida U112]
 gi|194372733|gb|EDX27444.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           novicida FTE]
          Length = 230

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 11/186 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN    +  AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYEVEAG-ALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN EL  +  +       + +
Sbjct: 62  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M   G Q 
Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 177

Query: 182 NFGFKT 187
           N   +T
Sbjct: 178 NLSLQT 183


>gi|291613978|ref|YP_003524135.1| DNA polymerase III, subunit epsilon [Sideroxydans lithotrophicus
           ES-1]
 gi|291584090|gb|ADE11748.1| DNA polymerase III, epsilon subunit [Sideroxydans lithotrophicus
           ES-1]
          Length = 233

 Score =  148 bits (373), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 80/185 (43%), Positives = 114/185 (61%), Gaps = 5/185 (2%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD K   RIIE+ A+EL     + RTF  ++ P  R+    A  +HG+
Sbjct: 1   MRQIVLDTETTGLDPKQGHRIIEVAAIELNGRKVSERTFHRYINPE-REIDEGAAAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + L+D+P F+ +     +F     AE I HNA FD+GF+NAEL  +   PL  + +ID
Sbjct: 60  TLDRLQDEPKFAEVAPALLEFI--AGAELIIHNAPFDIGFLNAELA-LAGLPLLNNPVID 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +A+  HP  +N+LN+LC RY +  SHR+ HGALLD+ LL++VY+ M  G   +    
Sbjct: 117 TLKVAKELHPGKKNNLNALCDRYQVDNSHRTLHGALLDTELLAEVYLGMTRGQESLLGEE 176

Query: 186 KTNED 190
           ++ ED
Sbjct: 177 RSEED 181


>gi|62261930|gb|AAX78030.1| unknown protein [synthetic construct]
          Length = 265

 Score =  148 bits (373), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 11/186 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN    +  AL +HG+T
Sbjct: 29  RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYEVEAG-ALAIHGLT 87

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN EL  +  +       + +
Sbjct: 88  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 145

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M   G Q 
Sbjct: 146 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 203

Query: 182 NFGFKT 187
           N   +T
Sbjct: 204 NLSLQT 209


>gi|208779358|ref|ZP_03246704.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG]
 gi|208745158|gb|EDZ91456.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG]
          Length = 238

 Score =  148 bits (373), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 11/186 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN    +  AL +HG+T
Sbjct: 11  RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYEVEAG-ALAIHGLT 69

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN EL  +  +       + +
Sbjct: 70  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 127

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M   G Q 
Sbjct: 128 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRAFHGALLDSELLADVYLAMT--GGQT 185

Query: 182 NFGFKT 187
           N   +T
Sbjct: 186 NLSLQT 191


>gi|114563375|ref|YP_750888.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
 gi|114334668|gb|ABI72050.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
          Length = 242

 Score =  148 bits (373), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 77/187 (41%), Positives = 119/187 (63%), Gaps = 18/187 (9%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+++ D ETTG++          RIIEIG VE+++   T RT+  ++ P G+    EA++
Sbjct: 9   RQVILDTETTGMNQAGGPIYVGHRIIEIGCVEVINRRLTGRTYHQYINP-GQAIDEEAIQ 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP- 120
           +HGIT++ + ++P F  I  +F DF +   AE +AHNA FDV F++ E  ++N  P+ P 
Sbjct: 68  VHGITNDRVANEPRFHQIAKDFIDFID--GAEIVAHNANFDVSFMDHEFSKLN--PIGPK 123

Query: 121 ----SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                 I+D+L+IA+R HP  +N+L++LC+RYGI    R+ HGALLD+ +L+DVY+ M  
Sbjct: 124 TKDICSILDSLAIAKRLHPGQKNNLDALCRRYGIDNGRRTYHGALLDAEILADVYLIMT- 182

Query: 177 GGSQINF 183
            G QI F
Sbjct: 183 -GGQIKF 188


>gi|317047021|ref|YP_004114669.1| DNA polymerase III subunit epsilon [Pantoea sp. At-9b]
 gi|316948638|gb|ADU68113.1| DNA polymerase III, epsilon subunit [Pantoea sp. At-9b]
          Length = 243

 Score =  147 bits (372), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 77/190 (40%), Positives = 117/190 (61%), Gaps = 11/190 (5%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T   F ++L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHIYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKPSFS I  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLADKPSFSDIADEFLDYI--RGAELVIHNASFDIGFMDYEFAMLKRDIGKTDT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC R  I  S R+ HGALLD+ +L++V++ +  G +
Sbjct: 124 FCQVTDSLAMARKMFPGKRNSLDALCSRLEIDNSKRTLHGALLDAEILAEVFLTLTGGQT 183

Query: 180 QINFGFKTNE 189
            + F  ++ +
Sbjct: 184 SLAFSMESEQ 193


>gi|157962223|ref|YP_001502257.1| DNA polymerase III subunit epsilon [Shewanella pealeana ATCC
           700345]
 gi|157847223|gb|ABV87722.1| DNA polymerase III, epsilon subunit [Shewanella pealeana ATCC
           700345]
          Length = 242

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 117/191 (61%), Gaps = 12/191 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  +  R+I+ D ETTG++  +       RIIEIG VE+++   T R +  ++ P  +  
Sbjct: 3   IVSSAKRQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVVNRRLTGRHYHEYINPQ-QPI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQR 112
             EA+ +HGIT+EF+ DKP F  +   F +F +   AE +AHNA FDV F++ E   LQ 
Sbjct: 62  DEEAIAVHGITNEFVADKPKFHEVAQSFIEFID--GAEIVAHNANFDVSFMDHEFSMLQP 119

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +     D  +I+D+L+IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+
Sbjct: 120 LGPKTADICQILDSLAIAKHLHPGQKNNLDALCKRYGIDNSARDLHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINF 183
            M  G ++ N 
Sbjct: 180 LMTGGQTKFNL 190


>gi|153000540|ref|YP_001366221.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185]
 gi|160875177|ref|YP_001554493.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195]
 gi|217973494|ref|YP_002358245.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223]
 gi|151365158|gb|ABS08158.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185]
 gi|160860699|gb|ABX49233.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195]
 gi|217498629|gb|ACK46822.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223]
 gi|315267371|gb|ADT94224.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678]
          Length = 242

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 12/191 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++  +       RIIEIG VE+++   T R +  ++ P G+  
Sbjct: 3   IISNASRQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQR 112
            PEA+ +HGITDE +  +P F  +  +F +F +   AE +AHNA FDV F++ E   LQ 
Sbjct: 62  DPEAIAVHGITDERVSKEPRFHQVAQDFINFID--GAEIVAHNANFDVSFMDHEFSLLQP 119

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 D  +I+DTL IA+  HP  +N+L++LCKRYG+  S R  HGALLD+ +L+DVY+
Sbjct: 120 RGPKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINF 183
            M  G ++ N 
Sbjct: 180 IMTGGQTKFNL 190


>gi|167627857|ref|YP_001678357.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597858|gb|ABZ87856.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 230

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/189 (43%), Positives = 113/189 (59%), Gaps = 11/189 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN    +  AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRKVTGNNLHFYCNPNYEVEAG-ALAVHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-----S 121
           +EFL DKP F     +  DF   + AE I HNA FDV FIN EL  +  +         +
Sbjct: 62  NEFLADKPLFEENVDQMIDFL--RGAEIIIHNAAFDVPFINWELGLLKNNKYGTLEQHVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M   G Q 
Sbjct: 120 KIVDSLELARKKHPLQKNNLDALCKRYHIRNDHRTFHGALLDSELLADVYLAMT--GGQT 177

Query: 182 NFGFKTNED 190
           N   +T ++
Sbjct: 178 NLVLQTTKN 186


>gi|148261748|ref|YP_001235875.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5]
 gi|146403429|gb|ABQ31956.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5]
          Length = 225

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 128/231 (55%), Gaps = 13/231 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++FD ETTGL+    DR+IE+ A+EL +   T + F   + P  R    EA ++HG+T
Sbjct: 3   RAVLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGKVFHTLIDPE-RDIPAEASRVHGMT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +  KP F+ I +E  +FF E     +AHNA FD GF++AE  RI +  LD +R+IDT
Sbjct: 62  SADVAGKPKFAEIAAELLEFFAEDP--LVAHNAPFDFGFLDAEFARIGRAALDRARMIDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LC+R+ I  S R+ H ALLD  LL++VY++ + GG Q      
Sbjct: 120 LALAKQRFPGMPNSLDALCRRFDIDFSARTTHNALLDCKLLAEVYVE-LTGGRQRGLDLA 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                   E +   P     +  +P+    +  EL  H+  I+ L K  +W
Sbjct: 179 AESTIRLVEYRSEGP-----RTPRPVVA--SAAELAAHEAFIEKL-KEPVW 221


>gi|157375130|ref|YP_001473730.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157317504|gb|ABV36602.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 242

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/241 (37%), Positives = 137/241 (56%), Gaps = 20/241 (8%)

Query: 8   RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+++ D ETTG++          RIIEIG VE+++   T R +  ++ P  +    EA++
Sbjct: 9   RQVILDTETTGMNQGAGAIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QIIDEEAIE 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPL 118
           +HGIT+E++ +KP F+ I   F DF +   AE +AHNA FDV F++ E   LQ       
Sbjct: 68  VHGITNEYVANKPKFAEISQSFIDFID--GAEVVAHNASFDVNFMDHEFSLLQPRGPKTA 125

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  +I+DTL IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+ MM GG
Sbjct: 126 DICQILDTLDIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYL-MMTGG 184

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--I 236
                 F  + D+  + E   +   S   R      R T +EL +H++ +  + K+   I
Sbjct: 185 QT---KFNLSGDKAGEGEGGIIRLNS--NRANLKVIRATADELTKHEERLDLVAKSGQCI 239

Query: 237 W 237
           W
Sbjct: 240 W 240


>gi|171463544|ref|YP_001797657.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193082|gb|ACB44043.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 236

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/242 (35%), Positives = 137/242 (56%), Gaps = 24/242 (9%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+ +  DRIIEIG +E++    T+RTF  ++ P  R     A  +HG+
Sbjct: 1   MRQVILDTETTGLNPATGDRIIEIGCIEMVGRRLTDRTFHYYINPE-RDIDAGAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           + EFL DKP F++I  +  +F +   AE + HNA FD+GF++ E   + + P     S+I
Sbjct: 60  SREFLSDKPIFANIVEQLIEFVD--GAEILIHNAAFDLGFLDNEFALLKRPPFRNLASKI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN- 182
            DTL  AR+  P  RN L++LC+R+ I+  HR+ HGALLD+ LL++VY+ M  G   ++ 
Sbjct: 118 TDTLLDARQMFPGKRNSLDALCERFSISNKHRTLHGALLDAQLLAEVYVAMTRGQEDLSI 177

Query: 183 --FGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDEHDKTIQTLG----KNA 235
               +    D       K +P N+ LL          + E+L+ H+K +  +     K++
Sbjct: 178 DLIDYTVGADS--SVHTKALPTNLKLLSA--------SNEDLESHEKILAEIAKASKKDS 227

Query: 236 IW 237
           +W
Sbjct: 228 VW 229


>gi|126174224|ref|YP_001050373.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155]
 gi|125997429|gb|ABN61504.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155]
          Length = 242

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 12/191 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++  +       RIIEIG VE+++   T R +  ++ P G+  
Sbjct: 3   IISNANRQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQR 112
            PEA+ +HGITDE +  +P F  +  +F +F +   AE +AHNA FDV F++ E   LQ 
Sbjct: 62  DPEAIAVHGITDERVSKEPRFHQVAQDFINFID--GAEIVAHNANFDVSFMDHEFSLLQP 119

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 D  +I+DTL IA+  HP  +N+L++LCKRYG+  S R  HGALLD+ +L+DVY+
Sbjct: 120 RGPKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINF 183
            M  G ++ N 
Sbjct: 180 IMTGGQTKFNL 190


>gi|289809670|ref|ZP_06540299.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 187

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 111/178 (62%), Gaps = 11/178 (6%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGG 184


>gi|304408611|ref|ZP_07390232.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|307305439|ref|ZP_07585187.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
 gi|304352432|gb|EFM16829.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|306911742|gb|EFN42167.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
          Length = 242

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 12/191 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++  +       RIIEIG VE+++   T R +  ++ P G+  
Sbjct: 3   IISNANRQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINP-GQTI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQR 112
            PEA+ +HGITDE +  +P F  +  +F +F +   AE +AHNA FDV F++ E   LQ 
Sbjct: 62  DPEAIAVHGITDERVSKEPRFHQVAQDFINFID--GAEIVAHNANFDVSFMDHEFSLLQP 119

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 D  +I+DTL IA+  HP  +N+L++LCKRYG+  S R  HGALLD+ +L+DVY+
Sbjct: 120 RGPKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINF 183
            M  G ++ N 
Sbjct: 180 IMTGGQTKFNL 190


>gi|212635110|ref|YP_002311635.1| DNA polymerase III subunit epsilon [Shewanella piezotolerans WP3]
 gi|212556594|gb|ACJ29048.1| DNA polymerase III, epsilon subunit [Shewanella piezotolerans WP3]
          Length = 242

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/243 (36%), Positives = 139/243 (57%), Gaps = 24/243 (9%)

Query: 8   RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+I+ D ETTG++  +       RIIEIG VE+++   T R +  ++ P  +    EA++
Sbjct: 9   RQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVVNRKLTGRHYHEYINPL-QPIDEEAIE 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPL 118
           +HGIT+EF+ DKP F  I   F +F +   AE +AHNA FDV F++ E   LQ I     
Sbjct: 68  VHGITNEFVADKPKFHQIAQSFIEFID--GAEIVAHNANFDVSFMDHEFSMLQPIGPKTA 125

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +  +I+D+L+IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+ M   G
Sbjct: 126 EICQILDSLAIAKYLHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILADVYLIMT--G 183

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI--TKEELDEHDKTIQTLGKNA- 235
            Q  F   +      ++  +    I+ L +D+     I  + +EL  H++ +  + K+  
Sbjct: 184 GQTKFNLSS------EKAGQEGGGINRLPKDRAKLKVISASADELTRHEERLDLVAKSGQ 237

Query: 236 -IW 237
            IW
Sbjct: 238 CIW 240


>gi|187931822|ref|YP_001891807.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712731|gb|ACD31028.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 230

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/186 (44%), Positives = 111/186 (59%), Gaps = 11/186 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN    +  AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYEVEAG-ALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN E   +  +       + +
Sbjct: 62  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWEFSLLKNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M   G Q 
Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 177

Query: 182 NFGFKT 187
           N   +T
Sbjct: 178 NLSLQT 183


>gi|124267443|ref|YP_001021447.1| DNA polymerase III subunit epsilon [Methylibium petroleiphilum PM1]
 gi|124260218|gb|ABM95212.1| DNA polymerase III, epsilon subunit [Methylibium petroleiphilum
           PM1]
          Length = 234

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/175 (46%), Positives = 112/175 (64%), Gaps = 10/175 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           R+I  D ETTGL  +N DRIIEIG VE+L    S  NR F  +L P  R+N  +A+K+HG
Sbjct: 3   RQIFLDTETTGLSPENGDRIIEIGCVEMLSRRLSGNNRHF--YLNPE-RRNHEDAVKIHG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSR 122
           +TDEFL DKP F+ +  E  ++     AE I HNA FDVGF++AEL+R+ +         
Sbjct: 60  LTDEFLADKPKFAVVADELMEYL--AGAEIIIHNAAFDVGFLDAELKRLQRPRFAEQVGA 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           + D+L++AR   P   N L++LCKR  +  + R+ HGALLD+ LL++VYI+M  G
Sbjct: 118 VTDSLTMAREMFPGKSNSLDALCKRLEVDNASRTLHGALLDAGLLAEVYIRMTRG 172


>gi|32490818|ref|NP_871072.1| hypothetical protein WGLp069 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166024|dbj|BAC24215.1| dnaQ [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 246

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/190 (43%), Positives = 118/190 (62%), Gaps = 11/190 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++ N  R+IV D ETTG++         RIIEIGA+E+++   T R F  +L P+ R   
Sbjct: 1   MKINTERQIVLDTETTGMNKNGPHYYGHRIIEIGAIEMINRRLTGRCFHTYLKPD-RLVE 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            EA K+HGI+DEFL  +P+F  I  +F +F   + +E I HN+ FD+GFIN E+Q  NK+
Sbjct: 60  IEAFKIHGISDEFLFFQPTFEEIMEKFINFI--KGSELIIHNSVFDIGFINNEIQLCNKN 117

Query: 117 PLDPS---RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             + +    +IDTL +AR   P  RN+L++L  RYGI  + R  HGALLD+ +LS+VY+ 
Sbjct: 118 LNNINYYCSVIDTLKLARNIFPGKRNNLDALSDRYGIDTTKRILHGALLDAEILSNVYLL 177

Query: 174 MMVGGSQINF 183
           M  G   INF
Sbjct: 178 MTGGQIPINF 187


>gi|319944001|ref|ZP_08018281.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia
           mirabilis ATCC 51599]
 gi|319742762|gb|EFV95169.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia
           mirabilis ATCC 51599]
          Length = 238

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 116/186 (62%), Gaps = 6/186 (3%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++V D ETTGL+ SK  RIIEIG VE+++   T     +++ P  R+    A  +HG+T
Sbjct: 6   RQVVLDTETTGLEASKGHRIIEIGCVEMVNRRITRNNLHLYINPE-REVDEGAAAVHGMT 64

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124
            + L+DKP+F+ I  +F DF   + AE I HNA FD GF++AEL R+ +       + + 
Sbjct: 65  WDDLRDKPTFAQIVDQFLDFC--RGAEIIIHNASFDTGFLDAELARLGRGTFASHVACVT 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           D+L++AR ++P  RN+L++LC+R  +   HR+ HGALLDS LL++VY+ M  G    + G
Sbjct: 123 DSLAMARERYPGKRNNLDALCERLMVPNKHRTLHGALLDSELLAEVYLGMTRGQGSFDIG 182

Query: 185 FKTNED 190
               +D
Sbjct: 183 SSAEDD 188


>gi|254522635|ref|ZP_05134690.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
 gi|219720226|gb|EED38751.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
          Length = 243

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 130/239 (54%), Gaps = 13/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +RI+EIG VEL     T   +  ++ P+       A ++ G+
Sbjct: 1   MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQ-GAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           T EFL DKP F+ I  EF  F +   AE I HNA FD+GF++ EL  +        D   
Sbjct: 60  TLEFLDDKPGFAQIADEFLAFID--GAELIIHNAAFDLGFLDNELSLLGPQYGKITDRCT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDTL++AR + P  RN L++LCKR G+  SHR+ HG LLD+ +L DVYI +  G  +I 
Sbjct: 118 VIDTLAMARERFPGQRNSLDALCKRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238
           FG    +        +      LL R + +    T  EL+ H   ++ L K   +A+WD
Sbjct: 178 FGLGDEDGGGAGAALQAFDASKLLPRPRVM---ATPSELEAHAARLERLRKKAGHALWD 233


>gi|149912883|ref|ZP_01901417.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b]
 gi|149813289|gb|EDM73115.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b]
          Length = 244

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/248 (38%), Positives = 143/248 (57%), Gaps = 21/248 (8%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D  + DRI+EIGA+EL ++  T RTF  ++ P GR    EA ++HGI
Sbjct: 1   MREIVLDTETTGFDPEQGDRIVEIGALELYNHMPTGRTFHHYINP-GRGMPQEAFEVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             +DKP F  + + F +F    NA+ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLDAPRPPRPGEITLRDKPPFDHVANAFIEFVG--NAKLVIHNAAFDMKFLNAELGW 117

Query: 113 INKDPLDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           + K PL P  + IDTL+IAR+K P S   L++LC+R+ I  + R+ HGALLDS +L++VY
Sbjct: 118 L-KLPLLPWEQAIDTLAIARQKFPGSPASLDALCRRFAIDNTARTLHGALLDSEILAEVY 176

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           ++ ++GG Q +F    +        +  +       R +PL  RIT+ E   H   I+T+
Sbjct: 177 LE-LIGGRQPDFALSAHPVAQSGSAETDI-GWRPKPRPQPLPPRITETEAAAHAAFIETM 234

Query: 232 GKNAIWDR 239
           G  ++W +
Sbjct: 235 GDGSLWKK 242


>gi|167623805|ref|YP_001674099.1| DNA polymerase III subunit epsilon [Shewanella halifaxensis
           HAW-EB4]
 gi|167353827|gb|ABZ76440.1| DNA polymerase III, epsilon subunit [Shewanella halifaxensis
           HAW-EB4]
          Length = 242

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 12/191 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  +  R+I+ D ETTG++  +       RIIEIG VE+++   T R +  ++ P  +  
Sbjct: 3   IVSSAKRQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QPI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQR 112
             EA+ +HGIT+EF+ DKP F  I   F +F +   AE +AHNA FDV F++ E   LQ 
Sbjct: 62  DEEAIAVHGITNEFVADKPKFHEIAQSFIEFID--GAEIVAHNANFDVSFMDHEFSMLQP 119

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 D  +I+D+L+IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+
Sbjct: 120 RGPKTADICQILDSLAIAKHLHPGQKNNLDALCKRYGIDNSARDLHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINF 183
            M  G ++ N 
Sbjct: 180 LMTGGQTKFNL 190


>gi|189183653|ref|YP_001937438.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180424|dbj|BAG40204.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
           Ikeda]
          Length = 222

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 82/172 (47%), Positives = 111/172 (64%), Gaps = 5/172 (2%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           RKIV D ET+GLD K   RIIEIGAVEL  D ++   TF  ++ P  R  S EA K+HG+
Sbjct: 3   RKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPE-RDISKEAYKVHGL 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL DKP F  I  EF  F +   A+ I HNA FD+ F+N+EL RI K  +  + +ID
Sbjct: 62  SRDFLSDKPKFREIVDEFLQFID--GAQLIMHNANFDMQFLNSELFRIRKSAIPNTCVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           TL++AR++ P  R +L++LC ++ I  S R  HGAL D+ LL+ VY +MM G
Sbjct: 120 TLTLARKRFPKERVNLDALCYKFRIDTSDRHLHGALKDAKLLALVYGRMMRG 171


>gi|148284671|ref|YP_001248761.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
           Boryong]
 gi|146740110|emb|CAM80283.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
           Boryong]
          Length = 222

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 82/172 (47%), Positives = 111/172 (64%), Gaps = 5/172 (2%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           RKIV D ET+GLD K   RIIEIGAVEL  D ++   TF  ++ P  R  S EA K+HG+
Sbjct: 3   RKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPE-RDISKEAYKVHGL 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL DKP F  I  EF  F +   A+ I HNA FD+ F+N+EL RI K  +  + +ID
Sbjct: 62  SRDFLSDKPKFREIVDEFLQFIDR--AQLIMHNANFDMQFLNSELFRIRKSAIPNTCVID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           TL++AR++ P  R +L++LC ++ I  S R  HGAL D+ LL+ VY +MM G
Sbjct: 120 TLTLARKRFPKERVNLDALCYKFRIDTSDRHLHGALKDAKLLALVYGRMMHG 171


>gi|319760362|ref|YP_004124300.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039076|gb|ADV33626.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 251

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 81/185 (43%), Positives = 113/185 (61%), Gaps = 11/185 (5%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R ++ D ETTG++      +  +IIEIGAVE+++ S T   F V+L PN R    EA
Sbjct: 4   NTTRYVILDTETTGMNKFGIHYEGHKIIEIGAVEIINRSLTKNKFHVYLNPN-RPVDSEA 62

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KD 116
            K+HGI+D FLKDKP FS I ++F  F    N   + HNA FDVGF+N EL+  N   K 
Sbjct: 63  FKIHGISDRFLKDKPVFSDISNKFLSFICGSN--LVIHNASFDVGFLNFELRETNLKYKT 120

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                 IID+L +AR   P  RN L++LC+RY I IS R+ H AL+D+ +L+ V++ M  
Sbjct: 121 LETYCSIIDSLKLARNLFPGQRNSLDALCERYFIDISQRNLHNALIDAQILAYVFLAMTG 180

Query: 177 GGSQI 181
           G +++
Sbjct: 181 GQTEM 185


>gi|296536098|ref|ZP_06898231.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC
           49957]
 gi|296263574|gb|EFH10066.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC
           49957]
          Length = 241

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 75/174 (43%), Positives = 107/174 (61%), Gaps = 5/174 (2%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG D    DR++E+ AVE+++   T R F + + P  R    EA K+HG T
Sbjct: 3   RALVLDTETTGFDPLTGDRVLEVAAVEIVNLVPTGRHFHMLIDPE-RDVPEEATKVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E L  KP F+ I     DF  +     IAHNA FD GF++ EL++     LD +R++DT
Sbjct: 62  REMLIGKPKFAEIAPAMLDFLGDD--PIIAHNAPFDFGFLDWELKKAGHKALDRARMVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           L++A+++ P   N L++LC+RYGI  S R+ H ALLD  LL+ VY+++M GG Q
Sbjct: 120 LALAKKRFPGLPNSLDALCRRYGIDNSMRTAHNALLDVQLLAQVYLELM-GGKQ 172


>gi|89900967|ref|YP_523438.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
 gi|89345704|gb|ABD69907.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
          Length = 233

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 79/174 (45%), Positives = 105/174 (60%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL +   DRIIEIG VEL     T      +L P GR++  +AL++HGI
Sbjct: 1   MRQIFLDTETTGLSADTGDRIIEIGCVELFKRKLTGNNKHFYLNP-GRESHEDALRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T  FLKDKP F ++  E   +   ++AE I HNA FD+GF+N EL  + +         +
Sbjct: 60  TSAFLKDKPKFEAVADELLAYV--KDAEIIIHNAPFDLGFLNKELALLGRPRFKEFVGSV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            DTL +A+   P  RN LN+LC R G+  S R+ HGALLD+ LL+DVYI +  G
Sbjct: 118 TDTLVMAKEMFPGKRNSLNALCDRLGVDNSGRALHGALLDAELLADVYINLTRG 171


>gi|329296922|ref|ZP_08254258.1| DNA polymerase III subunit epsilon [Plautia stali symbiont]
          Length = 237

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 121/204 (59%), Gaps = 13/204 (6%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T   F ++L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ I  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLADKPTFAQIADEFLDYI--RGAELVIHNASFDIGFMDYEFAMLQRDIGKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++A +  P  RN L++LC R+ I  S R+ HGALLD+ +L++V++ M   G 
Sbjct: 124 FCQITDSLAMASKMFPGKRNSLDALCNRFEIDNSKRTLHGALLDAGILAEVFLTMT--GC 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203
           Q +  F    ++  + E + +  I
Sbjct: 182 QTSLAFSMEGEQSNQVEGEHIQRI 205


>gi|51473901|ref|YP_067658.1| DNA polymerase III subunit epsilon [Rickettsia typhi str.
           Wilmington]
 gi|81826284|sp|Q68W16|DPO3E_RICTY RecName: Full=DNA polymerase III subunit epsilon
 gi|51460213|gb|AAU04176.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 229

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 91/228 (39%), Positives = 132/228 (57%), Gaps = 15/228 (6%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+I+ D ETTGLD  +  RIIEIGA+E+++   T + F  ++ P  R    EA K+HGI
Sbjct: 4   LREIILDTETTGLDPQQGHRIIEIGAIEMVNKVLTGKHFHCYINPE-RDMPFEAYKIHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122
           + EFLKDKP F +I ++F  F    ++  I HNA FD+ F+N EL  + +     L+ + 
Sbjct: 63  SGEFLKDKPLFHTIANDFLKFI--ADSTLIIHNAPFDIKFLNHELSLLKRTEIKFLELTN 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            IDTL +AR   P +R  L++LCKR+ +  S R  HGAL D+ LL++VY+  + GG Q  
Sbjct: 121 TIDTLVMARSMFPGARYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVA-LTGGRQST 179

Query: 183 FGF--KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
           F    K NE         TV  I + K  + +  + TKEEL +H + I
Sbjct: 180 FKMIDKPNEINNL-----TVKCIEVQKIKRSIVVKPTKEELQKHKEFI 222


>gi|307252915|ref|ZP_07534803.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859553|gb|EFM91578.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 239

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 17/224 (7%)

Query: 26  IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85
           IIEIGAVE+++   T RTF V++ P  R+   EA+K+HGIT+EFL+DKP F+ +  EF +
Sbjct: 13  IIEIGAVEVINRRLTGRTFHVYIKPP-REVEEEAIKVHGITNEFLQDKPVFAEVADEFIE 71

Query: 86  FFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSRIIDTLSIARRKHPSSRNDLN 142
           F   + AE I HNA FDV F++ E   +   P    +   + D+L++AR+ +P  RN+L+
Sbjct: 72  FI--KGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCSVTDSLAVARKMYPGKRNNLD 129

Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT--- 199
           +LC R GI  S R  HGALLD+ +L+DV++ MM GG     G    ED     E      
Sbjct: 130 ALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLALLG---EEDATATHENVADLG 185

Query: 200 VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239
           +  I+  +    +   +++EE   H++ ++ + K    N IW R
Sbjct: 186 LGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWMR 229


>gi|307069564|ref|YP_003878041.1| putative DNA polymerase III subunit epsilon [Candidatus Zinderia
           insecticola CARI]
 gi|306482824|gb|ADM89695.1| putative DNA polymerase III, epsilon subunit [Candidatus Zinderia
           insecticola CARI]
          Length = 222

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/171 (44%), Positives = 113/171 (66%), Gaps = 6/171 (3%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           ++I+ DIETTGL+  K DRIIEI  +++L+   TN+ F  ++ PN RK++ +ALK+HGI+
Sbjct: 3   KEIILDIETTGLNVKKGDRIIEIACIKILNRKITNKKFHEYINPN-RKSNKDALKIHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124
           D+FLK+KP F  I  +  +F   +N   I HN+ FD+ F+N E + +           I+
Sbjct: 62  DKFLKNKPFFKDIIDKLINFI--KNYTIIIHNSSFDISFLNKEFKILKYKKFKYYVKNIV 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D+L IAR+K P+ +NDLNSLCKR+ I+I  R  H ALLD  LLS +Y+ ++
Sbjct: 120 DSLKIARKKFPNKKNDLNSLCKRFKISIKKRKLHNALLDCILLSKIYLILI 170


>gi|307248305|ref|ZP_07530330.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307263945|ref|ZP_07545548.1| hypothetical protein appser13_13530 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306855175|gb|EFM87353.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306870707|gb|EFN02448.1| hypothetical protein appser13_13530 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 239

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 17/224 (7%)

Query: 26  IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85
           IIEIGAVE+++   T RTF V++ P  R+   EA+K+HGIT+EFL+DKP F+ +  EF +
Sbjct: 13  IIEIGAVEVINRRLTGRTFHVYIKPP-REVDEEAIKVHGITNEFLQDKPVFAEVADEFIE 71

Query: 86  FFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSRIIDTLSIARRKHPSSRNDLN 142
           F   + AE I HNA FDV F++ E   +   P    +   + D+L++AR+ +P  RN+L+
Sbjct: 72  FI--KGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCSVTDSLAVARKMYPGKRNNLD 129

Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT--- 199
           +LC R GI  S R  HGALLD+ +L+DV++ MM GG     G    ED     E      
Sbjct: 130 ALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLALLG---EEDATATHENVADLG 185

Query: 200 VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239
           +  I+  +    +   +++EE   H++ ++ + K    N IW R
Sbjct: 186 LGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWMR 229


>gi|224824456|ref|ZP_03697563.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224602949|gb|EEG09125.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 242

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/174 (43%), Positives = 113/174 (64%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ S+  RIIE   +E+++   T R+  +++ P  R   P+A ++HGI
Sbjct: 1   MRQIILDTETTGLEPSQGHRIIEFAGLEMVNRKLTGRSLHLYIHPE-RDIDPDAERVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           + +FL DKP F+++  E  DF   ++AE I HNA FDVGF+NAE  RI  + +    + +
Sbjct: 60  SLDFLADKPRFAAVGPEIADFL--RDAELIIHNAPFDVGFLNAEFDRIGIERVSTLCASV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL +AR + P  RN L++LC R+ I  S+R+ HGAL+D  LL +VY+ M  G
Sbjct: 118 IDTLVMARDQFPGKRNSLDALCDRFEIDRSNRTLHGALIDCELLGEVYLWMTRG 171


>gi|149927491|ref|ZP_01915745.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
 gi|149823764|gb|EDM82990.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
          Length = 240

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/176 (43%), Positives = 108/176 (61%), Gaps = 10/176 (5%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTGL+ +   RIIEIG +E+     T+  F  ++ P  R+    A ++HGI
Sbjct: 1   MRYVVLDTETTGLEVRQGHRIIEIGCIEVNGRQVTDHHFHQYINPE-REVDEGAFQVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPS 121
           +DE L DKP F  I  +F DF   Q +  I HNA FD+GF++ EL+R+      D +D  
Sbjct: 60  SDEMLADKPKFKQIAKDFLDFV--QGSTLIIHNASFDIGFLDGELERLGLGKMADYVDG- 116

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +ID+L +AR   P  RN+L++LC R G+  +HR  HGALLDS +L++VY+ M  G
Sbjct: 117 -VIDSLGMAREMFPGKRNNLDALCDRLGVNNAHRQLHGALLDSQILAEVYLAMTRG 171


>gi|127513039|ref|YP_001094236.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
 gi|126638334|gb|ABO23977.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
          Length = 242

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/249 (35%), Positives = 142/249 (57%), Gaps = 24/249 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++          RIIEIG VE+++   T R F  ++ P  +  
Sbjct: 3   IISNAKRQVILDTETTGMNQGAGAVYFGHRIIEIGCVEVINRKLTGRHFHEYINPM-QAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114
             EA+ +HGIT+EF+ DKP F+ I   F +F +   AE +AHNA FDV F++ E   +  
Sbjct: 62  DEEAITVHGITNEFVADKPVFAQIAPAFLEFID--GAEIVAHNANFDVSFMDHEFSLLTP 119

Query: 115 KDP--LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + P   D  +++D+L IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+
Sbjct: 120 RGPKTTDICQVLDSLEIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI--TKEELDEHDKTIQT 230
            M  G ++    F+ + ++  +E       I  L  ++P    I  + +EL+ H++ +  
Sbjct: 180 IMTGGQTK----FELSNEKPGQESG----GIIRLANNRPSLKVIGASADELNMHEQRLDL 231

Query: 231 LGKNA--IW 237
           + K+   IW
Sbjct: 232 VEKSGQCIW 240


>gi|91205177|ref|YP_537532.1| DNA polymerase III subunit epsilon [Rickettsia bellii RML369-C]
 gi|157827486|ref|YP_001496550.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389]
 gi|122425898|sp|Q1RJM1|DPO3E_RICBR RecName: Full=DNA polymerase III subunit epsilon
 gi|91068721|gb|ABE04443.1| DNA polymerase III epsilon chain [Rickettsia bellii RML369-C]
 gi|157802790|gb|ABV79513.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389]
          Length = 229

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/240 (38%), Positives = 137/240 (57%), Gaps = 21/240 (8%)

Query: 5   NKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           + +R+I+ D ETTGLD K   RI+EIGA+E+++   T R F  +L P  R    EA ++H
Sbjct: 2   SSLREIILDTETTGLDPKGGHRIVEIGAIEMVNKVLTGRHFHFYLNPE-RDMPFEAYRIH 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDP 120
           GI+ EFLKDKP F +I  +F +F    +++ + HNA FDV F+N EL   +R     L+ 
Sbjct: 61  GISGEFLKDKPLFHTIADDFLEFI--ADSKLVIHNAPFDVKFLNHELSLLKRAEIKLLEL 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              IDTL +AR   P S+  L++LCKR+ +  S R  HGAL D+ LL++VY++ + GG Q
Sbjct: 119 EHAIDTLVMARSMFPGSKYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVE-LTGGRQ 177

Query: 181 INF-----GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
             F       K N   + + + +   NI ++K         TKEEL +H + +  + K A
Sbjct: 178 SAFKMLDKAAKINNLSYNRLDSQAHRNIPVIKP--------TKEELQKHKEFLSRVLKQA 229


>gi|123441273|ref|YP_001005260.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088234|emb|CAL11023.1| DNA polymerase III, epsilon chain [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 238

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/175 (42%), Positives = 114/175 (65%), Gaps = 6/175 (3%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
           G+  +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +HGI+DEFL DKP+F+
Sbjct: 5   GVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGVHGISDEFLADKPTFA 63

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS--RIIDTLSIARRKH 134
            I  EF +F   + AE I HNA FD+GF++ E + + +D P   +   I D+L +ARR  
Sbjct: 64  DITPEFLEFI--RGAELIIHNAAFDIGFMDYEFRMLQQDIPKTETFCTITDSLLLARRLF 121

Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G + ++F  + ++
Sbjct: 122 PGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLSFSMEGDQ 176


>gi|157964873|ref|YP_001499697.1| DNA polymerase III subunit epsilon [Rickettsia massiliae MTU5]
 gi|157844649|gb|ABV85150.1| DNA polymerase III epsilon chain [Rickettsia massiliae MTU5]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/233 (37%), Positives = 134/233 (57%), Gaps = 11/233 (4%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+I+ D ETTGLD +   RI+EIGA+E+++   T R F  ++ P  R    EA ++HGI
Sbjct: 4   LREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDPSR 122
           + EFLKDKP F +I  +F +F ++  ++ I HNA FD+ F+N EL   +R     L+ + 
Sbjct: 63  SGEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTEIKLLELAN 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY+++M GG Q  
Sbjct: 121 TIDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELM-GGRQSA 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           F                V N +       +  + TKEEL +H + +  + K A
Sbjct: 180 FKMVDKSAGINNLATNQVNNQT---EQATIVIKPTKEELQKHKEFLSRILKTA 229


>gi|15604567|ref|NP_221085.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
           Madrid E]
 gi|6685391|sp|Q9ZCJ9|DPO3E_RICPR RecName: Full=DNA polymerase III subunit epsilon
 gi|3861262|emb|CAA15161.1| DNA POLYMERASE III, EPSILON CHAIN (dnaQ) [Rickettsia prowazekii]
 gi|292572374|gb|ADE30289.1| DNA polymerase III epsilon chain [Rickettsia prowazekii Rp22]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/226 (38%), Positives = 131/226 (57%), Gaps = 11/226 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+I+ D ETTGLD  +  RI+EIGA+E+++   T + F  ++ P  R    EA K+HGI
Sbjct: 4   LREIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGKHFHFYINPE-RDMPFEAYKIHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122
           + EFLKDKP F +I ++F  F    ++  I HNA FD+ F+N EL  + +     L+ + 
Sbjct: 63  SGEFLKDKPLFKTIANDFLKFI--ADSTLIIHNAPFDIKFLNHELSLLKRTEIKFLELTN 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            IDTL +AR   P +R  L++LCKR+ +  S R  HGAL D+ LL++VY+  + GG Q  
Sbjct: 121 TIDTLVMARNMFPGARYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVA-LTGGRQST 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
           F      D       K V ++  +KR   +  + TKEEL +H + I
Sbjct: 180 FKMINKPDEINNLAVKCV-DVQQIKRG--IVVKPTKEELQKHKEFI 222


>gi|88606785|ref|YP_505310.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ]
 gi|88597848|gb|ABD43318.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ]
          Length = 244

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/171 (43%), Positives = 108/171 (63%), Gaps = 4/171 (2%)

Query: 6   KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K+R+IV D ETTGLD+   DRIIEIG VEL+DY  T R F  ++ P  R  S  A ++HG
Sbjct: 2   KVREIVLDTETTGLDADGGDRIIEIGCVELVDYVMTGRVFHKYIDPE-RDISVAATRVHG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT E L   P F+ +  E  DF   Q++  + HNA+FD+ F+  E++R++      + I+
Sbjct: 61  ITRESLIGMPKFAEVADELLDFL--QDSALVIHNARFDMRFLEVEIERLSNKRAITNTIV 118

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DTL +AR+K P     L++LCKR+ I+   R  HGAL D+ LL+ VY++++
Sbjct: 119 DTLEMARKKFPGMPASLDALCKRFNISTQERKFHGALKDATLLARVYVELL 169


>gi|15893035|ref|NP_360749.1| DNA polymerase III subunit epsilon [Rickettsia conorii str. Malish
           7]
 gi|20137858|sp|Q92GL1|DPO3E_RICCN RecName: Full=DNA polymerase III subunit epsilon
 gi|15620236|gb|AAL03650.1| DNA polymerase III epsilon chain [Rickettsia conorii str. Malish 7]
          Length = 230

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/233 (37%), Positives = 135/233 (57%), Gaps = 11/233 (4%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+I+ D ETTGLD +   RI+EIGA+E+++   T R F  ++ P  R    EA ++HGI
Sbjct: 4   LREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDPSR 122
           + EFLKDKP F +I  +F +F ++  ++ I HNA FD+ F+N EL   +R +   L+ + 
Sbjct: 63  SGEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTDIKLLELAN 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY+++M GG Q  
Sbjct: 121 TIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELM-GGRQSA 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           F                V N +       +  + TKEEL +H + +  + K A
Sbjct: 180 FKMVDKSAVINNLATNQVNNKT---EQTTIVIKPTKEELQKHKEFLSRILKTA 229


>gi|322831648|ref|YP_004211675.1| DNA polymerase III, subunit epsilon [Rahnella sp. Y9602]
 gi|321166849|gb|ADW72548.1| DNA polymerase III, epsilon subunit [Rahnella sp. Y9602]
          Length = 245

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 77/184 (41%), Positives = 117/184 (63%), Gaps = 11/184 (5%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D ETTG++      +  RIIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 9   RIVVLDTETTGMNKLGVHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPD-RLVDPEAFGV 67

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           HGI+DEFL DKP+F+ +  +F ++   +  E + HNA FD+GF++ E   + ++ P   +
Sbjct: 68  HGISDEFLADKPTFADVADDFIEYI--RGGELVIHNATFDIGFMDYEFDMLGRNLPKTET 125

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN+L++L  RY I  S R+ HGALLDS +L++VY+ M  G +
Sbjct: 126 FCKITDSLAMARKLFPGKRNNLDALSDRYLIDNSKRTLHGALLDSEILAEVYLMMTGGQT 185

Query: 180 QINF 183
            I F
Sbjct: 186 SIKF 189


>gi|262372107|ref|ZP_06065386.1| ribonuclease HI [Acinetobacter junii SH205]
 gi|262312132|gb|EEY93217.1| ribonuclease HI [Acinetobacter junii SH205]
          Length = 448

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 132/224 (58%), Gaps = 12/224 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   + NDRIIE+GA+E+++   T  +  +++ P   K   +++ +HGIT
Sbjct: 221 RQLILDTETTGFYYQDNDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVDVHGIT 278

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           DEFL DKP ++ I    ++F   + AE IAHNA FD+ F++ E +R     L +   + D
Sbjct: 279 DEFLADKPKYAEIADVLFEFL--KGAEIIAHNATFDMNFLDMEFKRAGLPALSEVCEVTD 336

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +L+DVY+ M   G Q++F  
Sbjct: 337 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMT--GGQVSFDM 394

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
                   ++ K T   + +   D P+    T +EL +H+  ++
Sbjct: 395 DALSQTEQQQNKTTRQRVQI---DLPIIYP-TDDELQQHETWVK 434


>gi|302878569|ref|YP_003847133.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
 gi|302581358|gb|ADL55369.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
          Length = 233

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/172 (45%), Positives = 108/172 (62%), Gaps = 5/172 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MRKIV D ETTGLD K   RIIEI A+ L     + R F  +L P  R+   +A ++HG 
Sbjct: 1   MRKIVLDTETTGLDPKKGHRIIEIAAIALEGRKVSKRHFHHYLDPE-REVDEDAARVHGF 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + LK +  F+ I + F +F +   AE +AHNA FD+ FIN EL+ +   PL+ + ++D
Sbjct: 60  TWDMLKGRAKFADIATSFLEFVD--GAELMAHNAPFDMSFINNELRLLGLPPLE-NPVVD 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           TL +AR  HP  +N L++LC RY I  +HR+ HGALLD+ LL++VY  M  G
Sbjct: 117 TLKMAREMHPGKKNGLDALCSRYEIDNTHRTLHGALLDTELLAEVYFAMTRG 168


>gi|34581277|ref|ZP_00142757.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246]
 gi|229587086|ref|YP_002845587.1| DNA polymerase III subunit epsilon [Rickettsia africae ESF-5]
 gi|238650388|ref|YP_002916240.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str.
           Rustic]
 gi|28262662|gb|EAA26166.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246]
 gi|228022136|gb|ACP53844.1| DNA polymerase III epsilon chain [Rickettsia africae ESF-5]
 gi|238624486|gb|ACR47192.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str.
           Rustic]
          Length = 229

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/233 (37%), Positives = 135/233 (57%), Gaps = 11/233 (4%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+I+ D ETTGLD +   RI+EIGA+E+++   T R F  ++ P  R    EA ++HGI
Sbjct: 4   LREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDPSR 122
           + EFLKDKP F +I  +F +F ++  ++ I HNA FD+ F+N EL   +R +   L+ + 
Sbjct: 63  SGEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTDIKLLELAN 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY+++M GG Q  
Sbjct: 121 TIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELM-GGRQSA 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           F                V N +       +  + TKEEL +H + +  + K A
Sbjct: 180 FKMVDKSAVINNLATNQVNNKT---EQTTIVIKPTKEELQKHKEFLSRILKTA 229


>gi|50084331|ref|YP_045841.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. ADP1]
 gi|49530307|emb|CAG68019.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
           ,epsilon subunit, 3-5 exonucleolytic proofreading
           function] [Acinetobacter sp. ADP1]
          Length = 450

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 138/231 (59%), Gaps = 12/231 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           I+    R+++ D ETTG   ++ DRIIE+GA+E+++   T  +  +++ P   K   +++
Sbjct: 217 IQAQGPRQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSV 274

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-D 119
            +HGITDEFL DKP ++ I    +++   + AE IAHNA FD+ F++ E +R     L +
Sbjct: 275 DVHGITDEFLLDKPKYAEIAEPLFEYL--KGAEIIAHNASFDMNFLDMEFKRAGLPTLSE 332

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              + DTL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M   G 
Sbjct: 333 VCEVTDTLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GG 390

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           Q++F       R   E+ +     + ++ D P+  R +  EL++H++ +++
Sbjct: 391 QVSFDMDALSQR---EQNQRKGQRARIEADLPVI-RPSANELEKHNEWVKS 437


>gi|157828957|ref|YP_001495199.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933682|ref|YP_001650471.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           Iowa]
 gi|157801438|gb|ABV76691.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165908769|gb|ABY73065.1| DNA polymerase III, epsilon chain [Rickettsia rickettsii str. Iowa]
          Length = 229

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/233 (37%), Positives = 135/233 (57%), Gaps = 11/233 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+I+ D ETTGLD  +  RI+EIGA+E+++   T R F  ++ P  R    EA ++HGI
Sbjct: 4   LREIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDPSR 122
           + EFLKDKP F +I  +F +F ++  ++ I HNA FD+ F+N EL   +R +   L+ + 
Sbjct: 63  SGEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTDIKLLELAN 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY+++M GG Q  
Sbjct: 121 TIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELM-GGRQSA 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           F                V N +       +  + TKEEL +H + +  + K A
Sbjct: 180 FKMVDKSAVINNLATNQVNNKT---EQTTIVIKPTKEELQKHKEFLSRILKTA 229


>gi|34496712|ref|NP_900927.1| DNA-directed DNA polymerase subunit epsilon [Chromobacterium
           violaceum ATCC 12472]
 gi|34102567|gb|AAQ58932.1| DNA-directed DNA polymerase, epsilon chain [Chromobacterium
           violaceum ATCC 12472]
          Length = 239

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/174 (43%), Positives = 109/174 (62%), Gaps = 6/174 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGLD  +  RIIE   +E++    T +   +++ P  R+  PEA ++HGI
Sbjct: 1   MRQIILDTETTGLDPQQGHRIIEFAGLEMVGRKLTGKHLHLYIHPE-REIDPEAQRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           + EFL  KP F+ +  E  DF   ++AE I HNA FDVGF+NAE  +   +P+    + +
Sbjct: 60  SLEFLAGKPVFAKVAHEIADFL--RDAELIIHNAPFDVGFLNAEFAKAGIEPVGKLCASV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IDTL+ AR   P  RN L++LC R+ I  S+R+ HGAL+D  LLS+VY+ M  G
Sbjct: 118 IDTLAEARDMFPGKRNSLDALCDRFEIDRSNRTLHGALVDCELLSEVYLWMTRG 171


>gi|239947177|ref|ZP_04698930.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921453|gb|EER21477.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 240

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 116/181 (64%), Gaps = 8/181 (4%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+I+ D ETTGLD +   RI+EIGA+E+++   T R F  ++ P  R    EA ++HGI
Sbjct: 15  LREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRMHGI 73

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDPSR 122
           + EFLKDKP F +I  +F +F    +++ I HNA FD+ F+N EL   +R     L+ + 
Sbjct: 74  SGEFLKDKPLFHTIADDFLEFI--ADSKLIIHNAPFDIKFLNHELSLLKRAEIKLLELAN 131

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY+++M GG Q  
Sbjct: 132 TIDTLVMARSMFPGSKYNLDALCKRFKVDNSSRQLHGALKDAALLAEVYVELM-GGRQSA 190

Query: 183 F 183
           F
Sbjct: 191 F 191


>gi|294141155|ref|YP_003557133.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12]
 gi|293327624|dbj|BAJ02355.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12]
          Length = 242

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 118/195 (60%), Gaps = 12/195 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  +  R+I+ D ETTG++          RIIEIG VE+++   T R +  ++ P  +  
Sbjct: 3   IVSSAKRQIILDTETTGMNQAAGAIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QLI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114
             EA+++HGI++E++ +KP F+ I   F +F +   AE +AHNA FD+ F++ E   +  
Sbjct: 62  DEEAIQVHGISNEYVANKPKFAEIAQSFIEFID--GAEVVAHNASFDISFMDHEFGLLRP 119

Query: 115 KDP--LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           K P   D   I+DTL+IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+
Sbjct: 120 KGPKTADICGILDTLAIAKYLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINFGFKT 187
            M  G ++ N    T
Sbjct: 180 LMTGGQTKFNLSGDT 194


>gi|67458568|ref|YP_246192.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2]
 gi|75536966|sp|Q4UN31|DPO3E_RICFE RecName: Full=DNA polymerase III subunit epsilon
 gi|67004101|gb|AAY61027.1| DNA polymerase III epsilon chain [Rickettsia felis URRWXCal2]
          Length = 229

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 86/233 (36%), Positives = 136/233 (58%), Gaps = 11/233 (4%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+I+ D ETTGLD +   RI+EIGA+E+++   T R F  ++ P  R    +A ++HGI
Sbjct: 4   LREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFDAYRIHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDPSR 122
           + EFLKDKP F +I  +F +F ++  ++ I HNA FD+ F+N EL   +R     L+ S 
Sbjct: 63  SGEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRAEIKLLELSN 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY++ + GG Q  
Sbjct: 121 AIDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVE-LTGGRQSA 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           F      D+  +        ++       +  + TKEEL +H + + ++ K A
Sbjct: 180 FKMV---DKSVETNNLATNQVNNKTEQATIVIKPTKEELQKHKEFLSSILKTA 229


>gi|163797056|ref|ZP_02191011.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199]
 gi|159177572|gb|EDP62125.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199]
          Length = 230

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 85/232 (36%), Positives = 136/232 (58%), Gaps = 6/232 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD    DRI+EIG VEL+++  T RT   ++ P  R     A ++HG+
Sbjct: 1   MREIVLDTETTGLDPDTGDRIVEIGCVELINHVPTGRTLHHYINPE-RDMPLGAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL   P F ++  E  +F    +A  + HNA FD+ FINAEL+R+N+  +  S+ +D
Sbjct: 60  SSEFLSAYPVFGALADEILEFLG--DAVLVIHNASFDMKFINAELRRLNRPEIPMSQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +ARRK+P ++  L++LC+R+ I   HR+ HGALLD+ LL+ VY++ ++GG Q +   
Sbjct: 118 TVQLARRKYPGAQASLDALCRRFEIDNGHRTLHGALLDADLLAAVYLE-LIGGRQPDLAL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
              +        +T  +       +P     + +EL  H   ++++ K+ IW
Sbjct: 177 AAQKPSDESPGSRTAEHREARPYREPRPHAPSADELAAHRTFLESI-KDPIW 227


>gi|260557363|ref|ZP_05829578.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606]
 gi|260408989|gb|EEX02292.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606]
          Length = 459

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 116/178 (65%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   ++ DRIIE+GA+E+++   T  +  +++ P   K   +++++HGIT
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVQVHGIT 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           DEFL DKP ++ I    +++   + AE IAHNA FD+ F++ E +R+    L +   + D
Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M   G Q++F
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSF 403


>gi|163752245|ref|ZP_02159446.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99]
 gi|161327875|gb|EDP99054.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99]
          Length = 240

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 116/191 (60%), Gaps = 12/191 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  +  R+++ D ETTG++          RIIEIG VE+++   T R +  ++ P  +  
Sbjct: 3   IVSSAKRQVILDTETTGMNQGAGAIFLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QLI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQR 112
             EA+ +HGI++E++ +KP F+ I   F +F +   AE +AHNA FD+ F++ E   LQ 
Sbjct: 62  DEEAIAVHGISNEYVANKPKFAEIAQSFIEFID--GAEVVAHNASFDISFMDHEFGLLQP 119

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 D   I+DTL+IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+
Sbjct: 120 KGPKTADICAILDTLAIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINF 183
            M  G +++N 
Sbjct: 180 LMTGGQTKLNL 190


>gi|240142395|ref|YP_002966905.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
 gi|240012339|gb|ACS43564.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
          Length = 248

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 84/207 (40%), Positives = 121/207 (58%), Gaps = 12/207 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG D K  DRIIE+G VE+++  +T R F  ++ P  R    +A  +HGIT
Sbjct: 6   RIVVGDTETTGTDPKGGDRIIEVGFVEIVNGFRTGRHFHSYVNPE-RPVPADATAIHGIT 64

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE LKD P F+++ ++  +F  +  A  I HNA FD+GF + E   ++   LD SR+ D+
Sbjct: 65  DEMLKDAPVFAAVAADIVEFIADSPA--IFHNAPFDLGFFDLEFGLLSLPSLDRSRVTDS 122

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFG 184
           L  AR+  P+ ++  L++LC RYGI  + R+KHGAL+DS LL+DV++ M   GG    FG
Sbjct: 123 LVHARKLLPAGAKAGLDALCNRYGIDRTRRTKHGALMDSELLADVWLAMTGTGGLAHGFG 182

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKP 211
                     EE   V  +  L+R  P
Sbjct: 183 PAAQ-----AEESAAVGRVP-LRRHAP 203


>gi|193076772|gb|ABO11486.2| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978]
          Length = 497

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 116/178 (65%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   ++ DRIIE+GA+E+++   T  +  +++ P   K   +++++HGIT
Sbjct: 270 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVQVHGIT 327

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           DEFL DKP ++ I    +++   + AE IAHNA FD+ F++ E +R+    L +   + D
Sbjct: 328 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 385

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M   G Q++F
Sbjct: 386 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSF 441


>gi|332852350|ref|ZP_08434135.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013150]
 gi|332870148|ref|ZP_08439060.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013113]
 gi|332875093|ref|ZP_08442929.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6014059]
 gi|332729293|gb|EGJ60634.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013150]
 gi|332732415|gb|EGJ63671.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013113]
 gi|332736710|gb|EGJ67701.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6014059]
          Length = 497

 Score =  141 bits (356), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 116/178 (65%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   ++ DRIIE+GA+E+++   T  +  +++ P   K   +++++HGIT
Sbjct: 270 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVQVHGIT 327

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           DEFL DKP ++ I    +++   + AE IAHNA FD+ F++ E +R+    L +   + D
Sbjct: 328 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 385

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M   G Q++F
Sbjct: 386 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSF 441


>gi|323143749|ref|ZP_08078417.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT
           12066]
 gi|322416462|gb|EFY07128.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT
           12066]
          Length = 309

 Score =  141 bits (355), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 75/184 (40%), Positives = 116/184 (63%), Gaps = 9/184 (4%)

Query: 7   MRKIVFDIETTGLD----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +R++  D ETTG      +   RIIE+G VE+++   T R  Q F+ P+ R    EA ++
Sbjct: 4   LRQVALDTETTGKSDDGTTGTHRIIEVGCVEIINRRLTGRQLQFFVNPD-RHIDEEATEV 62

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE--LQRINKDPLDP 120
           HGITDE L DKP F+ + +E  DF   + +E + HNAKFD  F++ E  L ++N+   D 
Sbjct: 63  HGITDEMLADKPHFADVANELIDFI--RGSELLIHNAKFDSAFLDKEWDLLKLNEHTKDM 120

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +I+DT+ +AR+ +P+++ +L++LC  Y I  S R+ HGALLD+ LL++VY+ M  G S 
Sbjct: 121 CKIVDTVELARKINPNNQANLDNLCSIYDIDNSRRTVHGALLDAQLLAEVYLAMTGGQSS 180

Query: 181 INFG 184
            +FG
Sbjct: 181 FDFG 184


>gi|301596826|ref|ZP_07241834.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB059]
          Length = 438

 Score =  141 bits (355), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 116/178 (65%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   ++ DRIIE+GA+E+++   T  +  +++ P   K   +++++HGIT
Sbjct: 211 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVQVHGIT 268

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           DEFL DKP ++ I    +++   + AE IAHNA FD+ F++ E +R+    L +   + D
Sbjct: 269 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 326

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M   G Q++F
Sbjct: 327 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSF 382


>gi|239503330|ref|ZP_04662640.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB900]
          Length = 459

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 116/178 (65%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   ++ DRIIE+GA+E+++   T  +  +++ P   K   +++++HGIT
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVQVHGIT 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           DEFL DKP ++ I    +++   + AE IAHNA FD+ F++ E +R+    L +   + D
Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M   G Q++F
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSF 403


>gi|126641104|ref|YP_001084088.1| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978]
          Length = 459

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 116/178 (65%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   ++ DRIIE+GA+E+++   T  +  +++ P   K   +++++HGIT
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVQVHGIT 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           DEFL DKP ++ I    +++   + AE IAHNA FD+ F++ E +R+    L +   + D
Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M   G Q++F
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSF 403


>gi|169796679|ref|YP_001714472.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter baumannii AYE]
 gi|184157414|ref|YP_001845753.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii ACICU]
 gi|213156097|ref|YP_002318517.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii
           AB0057]
 gi|215484167|ref|YP_002326392.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           AB307-0294]
 gi|301344775|ref|ZP_07225516.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB056]
 gi|301510946|ref|ZP_07236183.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB058]
 gi|169149606|emb|CAM87496.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
           ,epsilon subunit, 3-5 exonucleolytic proofreading
           function] [Acinetobacter baumannii AYE]
 gi|183209008|gb|ACC56406.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU]
 gi|213055257|gb|ACJ40159.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii
           AB0057]
 gi|213985858|gb|ACJ56157.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           AB307-0294]
 gi|322507294|gb|ADX02748.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           1656-2]
 gi|323517313|gb|ADX91694.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 459

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 116/178 (65%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   ++ DRIIE+GA+E+++   T  +  +++ P   K   +++++HGIT
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVQVHGIT 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           DEFL DKP ++ I    +++   + AE IAHNA FD+ F++ E +R+    L +   + D
Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M   G Q++F
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSF 403


>gi|169633080|ref|YP_001706816.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter baumannii SDF]
 gi|169151872|emb|CAP00707.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
           ,epsilon subunit, 3-5 exonucleolytic proofreading
           function] [Acinetobacter baumannii]
          Length = 459

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 116/178 (65%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   ++ DRIIE+GA+E+++   T  +  +++ P   K   +++++HGIT
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVQVHGIT 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           DEFL DKP ++ I    +++   + AE IAHNA FD+ F++ E +R+    L +   + D
Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M   G Q++F
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSF 403


>gi|261364618|ref|ZP_05977501.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996]
 gi|288567207|gb|EFC88767.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996]
          Length = 239

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/236 (36%), Positives = 131/236 (55%), Gaps = 14/236 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL ++N DR++E   +E+++   T R   +++ P  R    EA ++HG+T
Sbjct: 3   RQIILDTETTGLYAENGDRLVEFAGLEMVNRQMTGRFLHLYVHPQ-RDMPEEAARVHGLT 61

Query: 67  DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            + L++K  P F+ +  E  +F   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 62  IDVLEEKNAPPFAKVGQEISEFI--RGAELIIHNAKFDVGFLNMEFRRMGLPSVEELGCE 119

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I DTL++AR   P  +  L++LC R  I  S R  HGAL+D  LL +VY+ M    ++  
Sbjct: 120 ITDTLAMAREMFPGQKASLDALCNRLSIDRSKRVLHGALIDCELLGEVYLAM----TRQQ 175

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKNAIW 237
           F     E     +E K V  I+  KR   L   +   EEL+EH+K +  LG+  IW
Sbjct: 176 FDLMGGESEEETKEDKPVI-IAETKRSSSLKVIKANSEELEEHEKYLDALGEPCIW 230


>gi|82702745|ref|YP_412311.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
 gi|82410810|gb|ABB74919.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 234

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/241 (37%), Positives = 129/241 (53%), Gaps = 21/241 (8%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL+ K   RIIEIGAVE++    T R F  +L P  R+    AL++HGI
Sbjct: 1   MRQIFIDTETTGLEPKLGHRIIEIGAVEMMSRRLTGRRFHHYLNPE-REIEEGALQVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T EFL DK  F+ +  E  +F +   AE I HNA FDV F++ EL   N   L      +
Sbjct: 60  TSEFLLDKRKFADVVHELLEFID--GAELIMHNAAFDVAFLDHELGLANLPALCECCHSV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL +A+   P  RN L++LC+RY +  S R+ HGALLD+ LL++VY+ M  G      
Sbjct: 118 TDTLKMAKELFPGKRNSLDALCERYEVDNSRRALHGALLDAELLAEVYLAMTRG------ 171

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR-ITKEELDEHDKTIQTLGKNA----IWD 238
                E    + E  +  ++ +   D  L     + EEL+ H + ++ + K +    +W 
Sbjct: 172 ----QESLLMELEAPSPLDLDISLHDLQLVVLPASAEELEAHARQLEMIEKESKGKCLWM 227

Query: 239 R 239
           R
Sbjct: 228 R 228


>gi|118594819|ref|ZP_01552166.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Methylophilales bacterium HTCC2181]
 gi|118440597|gb|EAV47224.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Methylophilales bacterium HTCC2181]
          Length = 222

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 128/234 (54%), Gaps = 15/234 (6%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGLD ++  R+IEI A+E  +   T+  F  ++ P  R+    A ++HGI
Sbjct: 1   MRQIFLDTETTGLDPNQGHRVIEIAAIEFNNRQATSNRFHFYVNPQ-REIDAAAQEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T +FL DKP F  I ++F  F N   +E + HNA FDVGF+N EL +I  + L+     I
Sbjct: 60  TLDFLNDKPLFVDIAADFIAFIN--GSELVIHNAPFDVGFLNMELGKIGMEKLESYCDGI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +D+L  A+   P  RN L++LC+ + +  S RS HGALLD+ LL +VYI+M  G      
Sbjct: 118 MDSLKFAKEIRPGQRNSLDALCRAFDVDNSTRSLHGALLDAQLLGEVYIQMTRGQEAFTI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            F         EE  +   +  +     + T+   +E++ H+  ++++ +   W
Sbjct: 178 NF---------EEDSSKAALQSVDHGDLIVTQPALDEVEAHNSYLRSINRTDGW 222


>gi|255320390|ref|ZP_05361574.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens
           SK82]
 gi|262379328|ref|ZP_06072484.1| ribonuclease HI [Acinetobacter radioresistens SH164]
 gi|255302585|gb|EET81818.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens
           SK82]
 gi|262298785|gb|EEY86698.1| ribonuclease HI [Acinetobacter radioresistens SH164]
          Length = 455

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 135/225 (60%), Gaps = 14/225 (6%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   ++ DRIIE+GA+E+++   T  +  +++ P   K   +++ +HGIT
Sbjct: 228 RQLILDTETTGFYFQDGDRIIEVGAIEMVNRKLTGSSIHIYINP--EKPVGDSVDIHGIT 285

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           DEFL+DKP ++ I    +++   + AE IAHNA FD+ F++ E +R     L +   + D
Sbjct: 286 DEFLQDKPRYAEIAEVLFNYL--KGAEIIAHNASFDMNFLDMEFKRAGFPALSEVCEVTD 343

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M   G Q++F  
Sbjct: 344 TLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSFDM 401

Query: 186 KTNEDRFFKEE-KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
               D   + E  ++  +  ++  D P+    + EEL  H++ +Q
Sbjct: 402 ----DALSQSEISQSQASRQVINVDLPVIVP-SPEELAAHEEWVQ 441


>gi|260221145|emb|CBA29417.1| DNA polymerase III subunit epsilon [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 236

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 124/241 (51%), Gaps = 19/241 (7%)

Query: 7   MRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           MR+IV D ETTG  + +    DR++EIG VEL++   T      +L P GR +   AL++
Sbjct: 1   MRQIVLDTETTGFYANHPDNPDRMVEIGCVELVNRKLTGNNLHFYLNP-GRDSDEGALRV 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HG+T +FL DKP F  I  +  D+     AE I HNA FD+ F++ EL R  + P     
Sbjct: 60  HGLTTQFLSDKPRFEEIAQQLVDYVG--GAEIIIHNAPFDLSFLDMELGRTGRKPFKTCV 117

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           + ++DTL +A+   P  RN L++LC R  +  S R+ HGALLD+ LL+DVYI M  G   
Sbjct: 118 AGVLDTLVMAKEMFPGKRNSLDALCDRLEVDNSGRTLHGALLDAELLADVYINMTRGQDA 177

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAI 236
           +       E    +E    V  + L     P+      +E+  H+  +  L    G   +
Sbjct: 178 LIM-----ESSAPQEAGIVVEQLDLRSIQLPVL-EANAQEMAAHEDVLSQLDKSSGGKTV 231

Query: 237 W 237
           W
Sbjct: 232 W 232


>gi|260550748|ref|ZP_05824956.1| ribonuclease HI [Acinetobacter sp. RUH2624]
 gi|260406254|gb|EEW99738.1| ribonuclease HI [Acinetobacter sp. RUH2624]
          Length = 459

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 134/228 (58%), Gaps = 12/228 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   ++ DRIIE+GA+E+++   T  +  +++ P   K   E+  +HGI+
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGESENIHGIS 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           D+FLKDKP ++ I    +++   + AE IAHNA FD+ F++ E +R+    L +   + D
Sbjct: 290 DDFLKDKPVYADIADTLFEYL--KGAEIIAHNATFDMNFLDMEFRRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M   G Q++F  
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSFDM 405

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
                    ++K T   I +   D P+    + EEL+ H+  ++   K
Sbjct: 406 DALSQSESDQQKTTKARIQI---DLPVIYP-SDEELNIHETWVKEFEK 449


>gi|325121399|gb|ADY80922.1| bifunctional protein dnaQ [Acinetobacter calcoaceticus PHEA-2]
          Length = 459

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 134/224 (59%), Gaps = 12/224 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   ++ DRIIE+GA+E+++   T  +  +++ P  +K   ++  +HGI+
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--QKPVGDSENIHGIS 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           D+FLKDKP ++ I    +D+   + AE IAHNA FD+ F++ E +R+    L +   + D
Sbjct: 290 DDFLKDKPLYADIADTLFDYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +L+DVY+ M   G Q++F  
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMT--GGQVSFDI 405

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
                    E  +   N S ++ D P+    + EEL+ H+  ++
Sbjct: 406 DALSQ---SENSQQTTNRSRVQIDLPVIYP-SDEELNTHETWVK 445


>gi|226952576|ref|ZP_03823040.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. ATCC 27244]
 gi|226836656|gb|EEH69039.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. ATCC 27244]
          Length = 452

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 131/224 (58%), Gaps = 12/224 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   ++ DRIIE+GA+E+++   T  +  +++ P   K   +++ +HGIT
Sbjct: 225 RQLILDTETTGFYYQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVDVHGIT 282

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           DEFL+DKP ++ I    + +   + AE IAHNA FD+ F++ E +R+    L +   + D
Sbjct: 283 DEFLQDKPKYAEIADALFAYL--KGAEIIAHNATFDMNFLDMEFKRVGLPLLSEVCEVTD 340

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +L+DVY+ M   G Q++F  
Sbjct: 341 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMT--GGQVSFDI 398

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
                    + K T   + +         R ++ EL+EH+  ++
Sbjct: 399 DALSQHEQNQNKTTRQRVQI----DLAVIRPSEHELNEHETWVK 438


>gi|157803402|ref|YP_001491951.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str.
           McKiel]
 gi|157784665|gb|ABV73166.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str.
           McKiel]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 130/222 (58%), Gaps = 11/222 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+I+ D ETTGLD  +  RI+EIGA+E+++   T R F  ++ P  R    EA ++HG+
Sbjct: 4   LREIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGL 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDPSR 122
           +DEFLKDKP F +I  +F +F ++  ++ I HNA FD+ F+N EL   +R     L+ + 
Sbjct: 63  SDEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTEIKLLELAN 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            IDTL +AR   P ++ +L++LCKR+ +  S R  H AL D+ LL++VY+  + GG Q  
Sbjct: 121 TIDTLVMARSMFPGAKYNLDALCKRFKVDNSGRQVHSALKDAALLAEVYVA-LTGGRQST 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
           F      DR  +        ++   +   +  + TKEEL +H
Sbjct: 180 FKIV---DRSIRINNLATHQVNNKTQQTTIVIKPTKEELQKH 218


>gi|261400727|ref|ZP_05986852.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC
           23970]
 gi|269209492|gb|EEZ75947.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC
           23970]
          Length = 244

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 133/237 (56%), Gaps = 17/237 (7%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA K+HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAAKVHGLT 62

Query: 67  DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L++K  P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IEVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M    ++  
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRRQ 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISL-LKRDKPL-FTRITKEELDEHDKTIQTLGKNAIW 237
           F     ++   KEE    P +S+ +KR   L   +  + EL  H+K +  LG++ IW
Sbjct: 177 FDLMGEDE---KEEPAAQPAVSVEMKRSAKLKVVKADETELAAHEKYLDGLGESCIW 230


>gi|157826195|ref|YP_001493915.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford]
 gi|157800153|gb|ABV75407.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford]
          Length = 229

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/233 (36%), Positives = 135/233 (57%), Gaps = 11/233 (4%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+I+ D ETTGLD +   RI+EI A+E+++   T R F  ++ P  R    +A ++HGI
Sbjct: 4   LREIILDTETTGLDPRQGHRIVEIAAIEMMNKVLTGRNFHFYINPE-RDIPFDAYRIHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDPSR 122
           + EFLKDKP F +I  +F +F    +++ + HNA FD+ F+N EL   +R     L+ S 
Sbjct: 63  SGEFLKDKPLFHTIADDFLEFI--ADSKLVIHNAPFDIKFLNHELSLLKRAEIKLLELSN 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY++ + GG Q +
Sbjct: 121 AIDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVE-LTGGRQSS 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           F      D+        +  ++       +  + TKEEL +H + + ++ K A
Sbjct: 180 FKMV---DKSAGINNLAINQVNSKTEQASIVIKPTKEELQKHKEFLSSILKTA 229


>gi|294649872|ref|ZP_06727272.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter haemolyticus ATCC 19194]
 gi|292824246|gb|EFF83049.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 452

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 115/178 (64%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   ++ DRIIE+GA+E+++   T  +  +++ P   K   +++ +HGIT
Sbjct: 225 RQLILDTETTGFYYQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVDVHGIT 282

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           DEFL+DKP ++ I    + +   + AE IAHNA FD+ F++ E +R+    L +   + D
Sbjct: 283 DEFLQDKPKYAEIADALFAYL--KGAEIIAHNATFDMNFLDMEFKRVGLPLLSEVCEVTD 340

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +L+DVY+ M   G Q++F
Sbjct: 341 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMT--GGQVSF 396


>gi|319941413|ref|ZP_08015741.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B]
 gi|319805033|gb|EFW01863.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B]
          Length = 246

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/234 (36%), Positives = 131/234 (55%), Gaps = 21/234 (8%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           R I  D ETTGLD++N DRIIEIG V +   +  S      Q+F+ P  R+   EA+ +H
Sbjct: 6   RLITLDTETTGLDAQNGDRIIEIGCVAIEGRMMRSTDEHHLQIFVNPE-REVPEEAVAIH 64

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSR 122
           GIT E+L+DKP F+ I  +F DF   + +  + HNA FD GF++ EL R  +  + D  +
Sbjct: 65  GITTEYLQDKPKFAEIADKFIDFV--KGSTLVIHNAAFDTGFLDMELGRCGRGKISDYCQ 122

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDT+ +A++  P     L+SLC+ Y I  S+R+ HGALLD+ LL++VY+ +  G   + 
Sbjct: 123 VIDTVKLAKKLLPGRAVSLDSLCRYYEIDNSNRTLHGALLDAELLAEVYLSLSRGQDTLT 182

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR-DKPLFTRITKEELDEHDKTIQTLGKNA 235
                NED         + N+  +   D  +  + + EEL EH++ +    K A
Sbjct: 183 L---VNED---------IDNLPPMPAFDASIVIKASPEELAEHERILDIAEKKA 224


>gi|21672521|ref|NP_660588.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|21623143|gb|AAM67799.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 234

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/236 (42%), Positives = 137/236 (58%), Gaps = 17/236 (7%)

Query: 5   NKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R IV D ETTG++S      N RIIEIGA+E+++   T + F  ++ PN R    +A
Sbjct: 4   NTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN-RLIESDA 62

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGITD+FL DKPSF  I  +F+++   +N+E I HNA FDVGFIN E   + K   D
Sbjct: 63  SKIHGITDDFLSDKPSFKDIAKDFFNYI--KNSELIIHNASFDVGFINQEFSMLTKKIQD 120

Query: 120 PSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            S    IIDTL IAR+  P  +N L++LC RY I  SHR  HGA+LD+ LL  +Y+ M  
Sbjct: 121 ISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGKLYLLMTS 180

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTL 231
           G   I F      +R F+  KK     S+ K+ + L   +  K EL  H++ ++ L
Sbjct: 181 GQESIIFNKNIQNERNFRYIKK-----SITKKHRFLKIIKANKTELKLHNEYLKFL 231


>gi|33519691|ref|NP_878523.1| DNA polymerase III epsilon subunit [Candidatus Blochmannia
           floridanus]
 gi|33517354|emb|CAD83739.1| DNA polymerase III epsilon subunit [Candidatus Blochmannia
           floridanus]
          Length = 258

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/187 (41%), Positives = 113/187 (60%), Gaps = 11/187 (5%)

Query: 5   NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R +V D ETTG++      +  RIIEIGAVE+++   TN  F V+L PN R    EA
Sbjct: 4   NSNRYVVLDTETTGMNKFGVHYEGHRIIEIGAVEIINRRLTNNQFHVYLNPN-RSVDSEA 62

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDP 117
             +HGI+D+FL D+P F  I ++F  F   + +  + HNA FD+GF+N EL  I  N   
Sbjct: 63  FAIHGISDQFLVDQPCFLDIANDFLQFI--RGSTLVIHNASFDLGFLNFELHNIYLNSRT 120

Query: 118 LDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++    +ID+L +AR+  P  RN L++LC+RY I  S R  H AL+D+ LL+ V++ M  
Sbjct: 121 VESYCTVIDSLKLARKIFPGQRNSLDALCERYCIKNSKRILHNALIDAQLLAYVFLVMTG 180

Query: 177 GGSQINF 183
           G ++I F
Sbjct: 181 GQTRIQF 187


>gi|2833216|sp|Q08880|DPO3E_BUCAP RecName: Full=DNA polymerase III subunit epsilon
 gi|1794288|gb|AAC44791.1| DNA polymerase III epsilon chain [Buchnera aphidicola]
          Length = 233

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/236 (42%), Positives = 137/236 (58%), Gaps = 17/236 (7%)

Query: 5   NKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R IV D ETTG++S      N RIIEIGA+E+++   T + F  ++ PN R    +A
Sbjct: 3   NTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN-RLIESDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGITD+FL DKPSF  I  +F+++   +N+E I HNA FDVGFIN E   + K   D
Sbjct: 62  SKIHGITDDFLSDKPSFKDIAKDFFNYI--KNSELIIHNASFDVGFINQEFSMLTKKIQD 119

Query: 120 PSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            S    IIDTL IAR+  P  +N L++LC RY I  SHR  HGA+LD+ LL  +Y+ M  
Sbjct: 120 ISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGKLYLLMTS 179

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTL 231
           G   I F      +R F+  KK     S+ K+ + L   +  K EL  H++ ++ L
Sbjct: 180 GQESIIFNKNIQNERNFRYIKK-----SITKKHRFLKIIKANKTELKLHNEYLKFL 230


>gi|238022806|ref|ZP_04603232.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147]
 gi|237866009|gb|EEP67145.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147]
          Length = 244

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 103/172 (59%), Gaps = 8/172 (4%)

Query: 8   RKIVFDIETTGL----DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           R+I+ D ETTG         DR+IE   +E+++   T  T  +++ P  R    EA  +H
Sbjct: 7   RQIILDTETTGFYHSAAENPDRLIEFAGLEMVNRQLTENTLHLYIHPQ-RDIPAEAAAIH 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SR 122
           GIT + L+ KP F+ +  + +DF   + AE I HNAKFD+GF+NAE  R+   P+D    
Sbjct: 66  GITLDQLEGKPVFAQVAQQIFDFL--KGAELIIHNAKFDIGFLNAEFARVGLPPIDSVCS 123

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +IDTL +AR K+P  +N+L++LC R G+  S R  HGAL+D  LL  VY+ M
Sbjct: 124 VIDTLEMARNKYPGQKNNLDALCNRLGVDRSRRVLHGALIDCELLGGVYLAM 175


>gi|293608835|ref|ZP_06691138.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024]
 gi|292829408|gb|EFF87770.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024]
          Length = 459

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 134/224 (59%), Gaps = 12/224 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   ++ DRIIE+GA+E+++   T  +  +++ P  +K   ++  +HGI+
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--QKPVGDSENIHGIS 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           D+FLKDKP ++ I    +D+   + AE IAHNA FD+ F++ E +R+    L +   + D
Sbjct: 290 DDFLKDKPLYADIADTLFDYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +L+DVY+ M   G Q++F  
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMT--GGQVSFDI 405

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
                    E  +   N S ++ D P+    + EEL+ H+  ++
Sbjct: 406 DALSQ---SENSQQTTNRSRVQIDLPVIYP-SDEELNIHETWVK 445


>gi|299771048|ref|YP_003733074.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. DR1]
 gi|298701136|gb|ADI91701.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. DR1]
          Length = 458

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 134/228 (58%), Gaps = 12/228 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   ++ DRIIE+GA+E+++   T  +  +++ P  +K   ++  +HGI+
Sbjct: 231 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--QKPVGDSENIHGIS 288

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           D FLKDKP ++ I    +D+   + AE IAHNA FD+ F++ E +R     L +   + D
Sbjct: 289 DNFLKDKPLYAEIADTLFDYL--KGAEIIAHNATFDMNFLDMEFRRAGLPALSEVCEVTD 346

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M   G Q++F  
Sbjct: 347 TLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSFDI 404

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
                    E  +   N + ++ D P+    ++EEL+ H+  ++   K
Sbjct: 405 DALSQ---SENSQNTTNKTRIQIDLPVIYP-SEEELNTHETWVKEFEK 448


>gi|262277819|ref|ZP_06055612.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114]
 gi|262224922|gb|EEY75381.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114]
          Length = 223

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 86/223 (38%), Positives = 131/223 (58%), Gaps = 10/223 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M++++ D ETTGL S ND+IIEI  +E+ D+  T   F VFL P   + S  A   HGI+
Sbjct: 1   MKEVLLDTETTGLSSVNDKIIEIACIEIEDHIPTGEKFHVFLNPE-MEISQGAYDTHGIS 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            EFLK+KP F+ +  +F  F +    + + HNA+FD+ F+N EL+ + +  +    I+DT
Sbjct: 60  KEFLKNKPKFNDVAKDFTKFID--GKKLVIHNAEFDLAFLNKELKEVGEKQISKDNIVDT 117

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L+IAR K P ++N L++LCKR+ I  S R KH ALLD  LL+ VYI++     +  F F 
Sbjct: 118 LNIAREKFPGAQNSLDALCKRFKIDNSRRQKHSALLDCELLAKVYIELF-EKKEPTFEFD 176

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
            N       + +++ N+  +K  K +  +IT EE   H + +Q
Sbjct: 177 LN------AQDESIKNVKNIKDRKQIIAQITNEEKRLHKEFLQ 213


>gi|303256972|ref|ZP_07342986.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
           1_1_47]
 gi|302860463|gb|EFL83540.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
           1_1_47]
          Length = 260

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 74/173 (42%), Positives = 108/173 (62%), Gaps = 10/173 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTG+ +K  DRIIEIG VEL ++  T++ F  ++ P  R+   E +++H I
Sbjct: 1   MREICLDTETTGMAAKEGDRIIEIGCVELGEHGLTDKNFHEYIDPE-RQMEAEVIRVHKI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----S 121
           T+EFL  KP F+ I  +F +F   Q A  I HNA+FD+GF+N EL+++ K  ++      
Sbjct: 60  TNEFLVGKPKFADIADKFIEFV--QGARLIIHNAQFDIGFLNEELRKLGKPSMEEICGKD 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYI 172
            IID++ +A+   P   N L++LCKR  I  + R K  HGALLD+ LL  VY+
Sbjct: 118 NIIDSMELAKAAFPQMHNSLDALCKRLEIDTTRRVKEGHGALLDAELLGQVYL 170


>gi|309378712|emb|CBX22662.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 244

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 81/237 (34%), Positives = 132/237 (55%), Gaps = 17/237 (7%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L++K  P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IEVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M    ++  
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRRQ 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISL-LKRDKPL-FTRITKEELDEHDKTIQTLGKNAIW 237
           F     ++   KEE    P +S  +KR   L   +  + EL  H+K +  LG++ IW
Sbjct: 177 FDLMGEDE---KEEPAAQPAVSAEMKRSAKLKVVKADEAELAAHEKYLDGLGESCIW 230


>gi|71065393|ref|YP_264120.1| bifunctional ribonuclease HI/DNA polymerase III, epsilon subunit
           [Psychrobacter arcticus 273-4]
 gi|71038378|gb|AAZ18686.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
           epsilon subunit [Psychrobacter arcticus 273-4]
          Length = 527

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 71/186 (38%), Positives = 112/186 (60%), Gaps = 7/186 (3%)

Query: 3   RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R    R+++ D ETTGLD  K DRIIE+G VE++    T     V++ P  R    E ++
Sbjct: 297 RHESDRQLIMDTETTGLDPLKGDRIIEVGIVEMIGRKFTGEKLHVYINPQ-RGMDEEVIR 355

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDP 120
           +HGI++ FL DKP+F  +    +DF +   AE IAHNA FD+ F+N E  ++   D  + 
Sbjct: 356 IHGISEAFLTDKPTFDQVAQSLYDFMD--GAEIIAHNASFDMNFLNMEFAKVGMHDFAER 413

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            R+ D+L +A++++P  +N L++L +R  +    R+ HGALLDS +L++VY+ M   G Q
Sbjct: 414 VRVTDSLVMAKQQYPGQKNTLDALVRRLDVGKQDRTFHGALLDSEILAEVYLTMT--GGQ 471

Query: 181 INFGFK 186
           +  G +
Sbjct: 472 VTLGIE 477


>gi|225075242|ref|ZP_03718441.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens
           NRL30031/H210]
 gi|224953417|gb|EEG34626.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens
           NRL30031/H210]
          Length = 245

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/244 (34%), Positives = 135/244 (55%), Gaps = 15/244 (6%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL  +N DR++E   +E+++   T+    +++ P  R    EA K+HG+T
Sbjct: 4   RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++    +
Sbjct: 63  IEVLEAKNAPPFAQVGKQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCK 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M    ++  
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRQQ 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKNAIWDRYI 241
           F     E     E K+TV  I+  KR   L   +   +EL  H+K +  LG+  +W +  
Sbjct: 177 FDLMGGEAEEEGEVKQTV--IAETKRTSQLKVVKANADELAAHEKYLDDLGEACVWRKAE 234

Query: 242 SSNQ 245
           +S++
Sbjct: 235 TSDE 238


>gi|262375943|ref|ZP_06069174.1| ribonuclease HI [Acinetobacter lwoffii SH145]
 gi|262309037|gb|EEY90169.1| ribonuclease HI [Acinetobacter lwoffii SH145]
          Length = 458

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 135/224 (60%), Gaps = 12/224 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   ++ DRIIE+GA+E+++   T  +  +++ P  +    +++ +HGIT
Sbjct: 231 RQLILDTETTGFYYQDGDRIIEVGALEMINRKLTGSSIHIYINP--KTPVGDSVNVHGIT 288

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           DEFL+DKP F  I    +D+ +   AE IAHNA FD+ F++ E +R     L +   + D
Sbjct: 289 DEFLQDKPLFEEISQVLFDYLH--GAEIIAHNATFDMNFLDMEFKRAGFKALSEVCDVTD 346

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M   G Q++F  
Sbjct: 347 TLALAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILSDVYLAMT--GGQVSFDI 404

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
                    E++ +   ++ ++ + P+    +++EL EH+  ++
Sbjct: 405 DALSQ---SEDQNSRSGMARVEIELPVILP-SEQELQEHENWVK 444


>gi|298369358|ref|ZP_06980676.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298283361|gb|EFI24848.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 240

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 132/238 (55%), Gaps = 19/238 (7%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL ++  DR++E   +E+++   T+    +++ P  R    EA K+HG+T
Sbjct: 4   RQIILDTETTGLYAEGGDRLVEFAGLEMINRQMTDNNLHLYIHPE-RDMPEEAAKVHGLT 62

Query: 67  DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L++K  P F+ +  +  DF   ++AE I HNAKFD+GF+N E +R+    ++     
Sbjct: 63  IEVLEEKNAPPFAEVGRQIADFI--RDAELIIHNAKFDIGFLNMEFRRMGLPSIEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R  +  S R  HGAL+D  LL +VY+ M    ++  
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRLSVDRSKRVLHGALIDCELLGEVYLAM----TRQQ 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK---EELDEHDKTIQTLGKNAIW 237
           F     E    KEE + V  + + +  +P   ++ K   EEL  H++ +  LG+  +W
Sbjct: 177 FDLMGGE----KEEDEEVKPVIIAETKRPAHLKVIKANAEELAAHEQYLDGLGEACLW 230


>gi|255065954|ref|ZP_05317809.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256]
 gi|255049865|gb|EET45329.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256]
          Length = 255

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 131/238 (55%), Gaps = 19/238 (7%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL ++  DR++E   +E+++   T     +++ P  R    EA K+HG+T
Sbjct: 19  RQIILDTETTGLYAEGGDRLVEFAGLEMINRQITGNNLHLYVHPE-RDMPEEAAKVHGLT 77

Query: 67  DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L++K  P F+ +  +  DF   ++AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 78  IEVLEEKNAPPFAEVGRQIADFI--RDAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCT 135

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R  +  S R  HGAL+D  LL +VY+ M    ++  
Sbjct: 136 VTDTLAMAREMFPGQKASLDALCNRLSVDRSKRVLHGALIDCELLGEVYLAM----TRQQ 191

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK---EELDEHDKTIQTLGKNAIW 237
           F     E    KEE + V  + + +  +P   ++ K   EEL  H++ +  LG+  +W
Sbjct: 192 FDLMGGE----KEEDEEVKPVIIAETKRPAHLKVIKANAEELAAHEQYLDGLGEACLW 245


>gi|313668102|ref|YP_004048386.1| DNA polymerase III, epsilon chain [Neisseria lactamica ST-640]
 gi|313005564|emb|CBN87000.1| DNA polymerase III, epsilon chain [Neisseria lactamica 020-06]
          Length = 244

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 132/237 (55%), Gaps = 17/237 (7%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            + L++K  P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M    ++  
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRRQ 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISL-LKRDKPL-FTRITKEELDEHDKTIQTLGKNAIW 237
           F     ++   KEE    P +S  +KR   L   +  + EL  H+K +  LG++ IW
Sbjct: 177 FDLMGEDE---KEEPAAQPAVSAEMKRSAKLKVVKADEAELAAHEKYLDGLGESCIW 230


>gi|241758776|ref|ZP_04756889.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114]
 gi|241320984|gb|EER57197.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114]
          Length = 245

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/244 (34%), Positives = 135/244 (55%), Gaps = 15/244 (6%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL  +N DR++E   +E+++   T+    +++ P  R    EA K+HG+T
Sbjct: 4   RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++    +
Sbjct: 63  IEVLEAKNAPPFAQVGKQIADFI--RGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCK 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M    ++  
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRQQ 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKNAIWDRYI 241
           F     E     E K+TV  I+  KR   L   +   +EL  H+K +  LG+  +W +  
Sbjct: 177 FDLMGGEAEEEGEVKQTV--IAETKRTSQLKVIKANADELAAHEKYLDDLGEACVWRKAE 234

Query: 242 SSNQ 245
           +S++
Sbjct: 235 TSDE 238


>gi|262279776|ref|ZP_06057561.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202]
 gi|262260127|gb|EEY78860.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202]
          Length = 458

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 114/178 (64%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   ++ DRIIE+GA+E+++   T  +  +++ P  +K   ++  +HGI+
Sbjct: 231 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--QKPVGDSENIHGIS 288

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           D FLKDKP ++ I    +D+   + AE IAHNA FD+ F++ E +R     L +   + D
Sbjct: 289 DNFLKDKPLYADIADTLFDYL--KGAEIIAHNATFDMNFLDMEFRRAGLPALSEVCEVTD 346

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M   G Q++F
Sbjct: 347 TLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSF 402


>gi|197103471|ref|YP_002128848.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1]
 gi|196476891|gb|ACG76419.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1]
          Length = 234

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 107/173 (61%), Gaps = 6/173 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG D    DR++EI  +E+ D+  T R F  ++ P  R    EA K+HG++
Sbjct: 3   REIVLDTETTGFDPLTGDRLVEIACLEIEDFIPTGRHFHAYIDPC-RDMPAEAEKVHGLS 61

Query: 67  DEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
             FL+ KP F +  I   F DF    +A  +AHNA FD  F+N EL   ++  L   R I
Sbjct: 62  TAFLRGKPKFEAPEIVEAFLDFV--ADAPIVAHNAAFDRAFVNYELGLCSRAELPDHRWI 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           DTL++A+++ P   N L++LCKR+ I+++ R KHGAL+D+ LL+ VY+++  G
Sbjct: 120 DTLALAKQRFPGMHNSLDALCKRFKISLAEREKHGALIDTKLLAAVYLELRGG 172


>gi|256112396|ref|ZP_05453317.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str.
           Ether]
          Length = 153

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 96/154 (62%), Gaps = 4/154 (2%)

Query: 91  NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150
            A  +AHNA FD+GFINAEL R+++  +    I+DTL++ARRKHP   N L++LCKRYGI
Sbjct: 2   GARLVAHNAMFDLGFINAELARLDQAEITSEHIVDTLALARRKHPIGPNSLDALCKRYGI 61

Query: 151 TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEK--KTVPNISLLKR 208
             SHR+ HGALLD+ +L++VYI+ ++GG Q   G          + +   + P + L  R
Sbjct: 62  DNSHRTLHGALLDAQILAEVYIE-LIGGKQTALGLTMESGSAGGDSRGNGSAP-VVLAAR 119

Query: 209 DKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
            +PL  RI+  E   H   ++ +G  A+W +Y+S
Sbjct: 120 PRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 153


>gi|325267110|ref|ZP_08133779.1| DNA-directed DNA polymerase III epsilon subunit [Kingella
           denitrificans ATCC 33394]
 gi|324981463|gb|EGC17106.1| DNA-directed DNA polymerase III epsilon subunit [Kingella
           denitrificans ATCC 33394]
          Length = 245

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 123/239 (51%), Gaps = 21/239 (8%)

Query: 8   RKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           R+I+ D ETTG +       DR+IE   +E+++   T     +++ P  R    EA  +H
Sbjct: 4   RQIILDTETTGFEHSRADNPDRMIEFAGLEMVNRQFTQNDLHLYIHPE-RDIPAEATAVH 62

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SR 122
           GIT + L DKP F+ +  + +DF   + AE I HNAKFDVGF+NAE  R+    +D    
Sbjct: 63  GITLDDLADKPVFADVAQQIFDFL--KGAELIIHNAKFDVGFLNAEFARVGLPNIDSVCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+++P  +N L++LC R G+  S R  HGAL+D  LL  VY+ M  G   + 
Sbjct: 121 VVDTLEMARKRYPGQKNSLDALCTRLGVDRSRRVLHGALIDCELLGGVYLAMTRGQFSL- 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPL------FTRITKEELDEHDKTIQTLGKNA 235
                 +D F  +   +  N +      PL          ++EE   H+  +  L K A
Sbjct: 180 ------DDAFAADNAVSAGNAAKGALAAPLSAGKLKVQAASEEECAAHENYLDGLDKAA 232


>gi|93005683|ref|YP_580120.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis
           K5]
 gi|92393361|gb|ABE74636.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis
           K5]
          Length = 532

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/181 (37%), Positives = 111/181 (61%), Gaps = 7/181 (3%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTGLD  K DR+IE+G VE++    T     V++ P  R    E +++HGI+
Sbjct: 307 RQLIMDTETTGLDPQKGDRVIEVGIVEMIGRKFTGEKLHVYINPQ-RGMDEEVIRIHGIS 365

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIID 125
           + FL DKP+F  +    +DF +   AE IAHNA FD+ F+N E  ++   D  +  ++ D
Sbjct: 366 EAFLTDKPTFDQVAQSLYDFMD--GAEIIAHNASFDMNFLNMEFAKVGMHDFAERVKVTD 423

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L +A++++P  +N L++L +R  +    R+ HGALLDS +L++VY+ M   G Q+  G 
Sbjct: 424 SLVMAKQQYPGQKNTLDALVRRLDVGKQDRTFHGALLDSEILAEVYLAMT--GGQVTLGI 481

Query: 186 K 186
           +
Sbjct: 482 E 482


>gi|297250280|ref|ZP_06863987.2| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC
           43768]
 gi|296839296|gb|EFH23234.1| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC
           43768]
          Length = 253

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 127/235 (54%), Gaps = 13/235 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 13  RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 71

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 72  IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 129

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M     Q +
Sbjct: 130 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 187

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                 E++    E K V +    +  K    R  + EL EH + +  LG++ IW
Sbjct: 188 LMGAVAEEKM---ETKPVAHTETKRSGKLKVIRADENELAEHGQYLDGLGESCIW 239


>gi|71083046|ref|YP_265765.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762529|ref|ZP_01264494.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062159|gb|AAZ21162.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718331|gb|EAS84981.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002]
          Length = 223

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 72/170 (42%), Positives = 105/170 (61%), Gaps = 4/170 (2%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M++++ D ETTGL  ++  RI+EIG +EL +   T   F  +L P  RK S +AL++HG 
Sbjct: 1   MKEVILDTETTGLSVRDGHRIVEIGCIELENLIPTKNRFHCYLNPE-RKVSEKALEVHGY 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDEFL     F  I  EF  F   +N   + HNA+FD+  +N EL  + K+ L+   ++D
Sbjct: 60  TDEFLSTHKKFGDIVDEFLVFI--ENKRLVIHNAEFDLSHLNNELSLLGKEKLNSENVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL++AR K P S   L++LCKRY I  S R++H AL+D  LL+ VYI ++
Sbjct: 118 TLALARDKFPGSPISLDALCKRYRIDNSKRTQHTALIDCDLLAKVYINLL 167


>gi|261380159|ref|ZP_05984732.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703]
 gi|284796997|gb|EFC52344.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703]
          Length = 245

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 130/236 (55%), Gaps = 15/236 (6%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL  +N DR++E   +E+++   T+    +++ P  R    EA K+HG+T
Sbjct: 4   RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++    +
Sbjct: 63  IEVLEAKNAPPFAQVGKQIADFI--RGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCK 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M    ++  
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRQQ 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKNAIW 237
           F     E     E K+TV  I+  KR   L   +   +EL  H+K +  LG+  +W
Sbjct: 177 FDLMGGEAEEEGEVKQTV--IAETKRTSQLKVIKANADELAAHEKYLDDLGEACVW 230


>gi|254673235|emb|CBA08224.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha275]
 gi|325144796|gb|EGC67087.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M01-240013]
          Length = 244

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 126/235 (53%), Gaps = 13/235 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M     Q +
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                 E++    E K V +    +  K    R  + EL EH + +  LG+  IW
Sbjct: 179 LMGAAAEEKM---ETKPVAHTETKRSGKLKVIRADENELAEHGRYLDGLGEACIW 230


>gi|325142705|gb|EGC65085.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           961-5945]
 gi|325198636|gb|ADY94092.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis G2136]
          Length = 244

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 127/235 (54%), Gaps = 13/235 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M     Q +
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
              +  E++    E K V +    +  K    R  + EL EH + +  LG+  IW
Sbjct: 179 LMGEAAEEKM---ETKPVVHTETKRSGKLKVIRADENELAEHGQYLDGLGEACIW 230


>gi|118602424|ref|YP_903639.1| DNA polymerase III, epsilon subunit [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567363|gb|ABL02168.1| DNA polymerase III, epsilon subunit [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 222

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 114/178 (64%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGI 65
           R IV D ETTG++ S+  RIIEIG  E++D   T N  +  ++ P+  +N  +++++HGI
Sbjct: 3   RLIVLDTETTGIEPSEGHRIIEIGCTEIVDRQITENNEYHEYIQPS--RNVGDSVRIHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           TD+FL +KP F +I   F  +   + A  I HNA FD+GF+N EL+ I  D    D   I
Sbjct: 61  TDKFLTNKPKFKAIVKTFLTYI--EGATLIIHNAPFDLGFLNHELKLIGIDERIEDKCNI 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ID+L +++++ P + ++L++LC+R+ I  S R+ HGALLD+ +L+ VY+ M  G S +
Sbjct: 119 IDSLELSKQQRPGTLHNLDALCRRFEINSSARTVHGALLDAKILAQVYLAMTGGQSTL 176


>gi|213582095|ref|ZP_03363921.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 172

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 102/166 (61%), Gaps = 11/166 (6%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ 
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQ 172


>gi|253795564|ref|YP_003038660.1| putative DNA polymerase III, epsilon subunit [Candidatus Hodgkinia
           cicadicola Dsem]
 gi|253739872|gb|ACT34207.1| putative DNA polymerase III, epsilon subunit [Candidatus Hodgkinia
           cicadicola Dsem]
          Length = 182

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 99/166 (59%), Gaps = 3/166 (1%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K+R+I+ D ETTGL  K DR+IE+ A++L D  +T  T+  +  P   K S  A  +HGI
Sbjct: 5   KIREIILDTETTGLSVKTDRLIELAAIKLEDGRRTPHTYHSYFNPQPVKVSRSAFNVHGI 64

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++EFL DKP+F S   EF +F      E IAHNA+FD+  IN ELQ    DP+D     D
Sbjct: 65  SNEFLSDKPAFKSCAREFLEFV--AGHELIAHNARFDLQIINRELQMAGADPIDAGCWRD 122

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +LSIA++  P+  N + +LCKR+ +     + H A  D  LL+ VY
Sbjct: 123 SLSIAKQLFPNRSNSMAALCKRFNLECETET-HSAARDCELLARVY 167


>gi|330719972|gb|EGG98425.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC2047]
          Length = 212

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/211 (37%), Positives = 120/211 (56%), Gaps = 14/211 (6%)

Query: 34  LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE 93
           ++D   T R +  ++ P  R     A ++HGIT +FL DKP F+ I +EF  F   + AE
Sbjct: 3   VIDRKLTGRHYHQYINPE-RDIDDGAAEVHGITSDFLADKPVFADIANEFLAFI--KGAE 59

Query: 94  WIAHNAKFDVGFINAELQRINKDPLDPSRI---IDTLSIARRKHPSSRNDLNSLCKRYGI 150
            + HNA FDVGFI+ E + +N+     S I   IDT+ +AR+KHP  +N+L++LCKRYG+
Sbjct: 60  LVIHNAPFDVGFIDHEFRLLNQGHPKTSEICDIIDTIVMARKKHPGQKNNLDALCKRYGV 119

Query: 151 TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
             S R  HGALLD+ +L+DVY+ M  G + +  G   +E    +  +  +  +S  +R  
Sbjct: 120 DNSARDLHGALLDAEILADVYLLMTGGQTALMLG--ADEQAGGEAGQMVINRVSAERR-- 175

Query: 211 PL-FTRITKEELDEHDKTIQTLGK---NAIW 237
           PL   R + EEL  H   +Q L K   + +W
Sbjct: 176 PLKVIRASDEELAAHHDNLQQLEKVSGDCLW 206


>gi|319638369|ref|ZP_07993131.1| DNA polymerase subunit III [Neisseria mucosa C102]
 gi|317400118|gb|EFV80777.1| DNA polymerase subunit III [Neisseria mucosa C102]
          Length = 245

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 129/236 (54%), Gaps = 15/236 (6%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL  +N DR++E   +E+++   T+    +++ P  R    EA K+HG+T
Sbjct: 4   RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++    +
Sbjct: 63  IEVLEAKNAPPFAQVGKQIADFI--RGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCK 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M    ++  
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRQQ 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKNAIW 237
           F     E     E K T+  I+  KR   L   +   +EL  H+K +  LG+  +W
Sbjct: 177 FDLMGGEAEEEGEVKPTI--IAETKRTSQLKVIKADADELAAHEKYLDDLGEACVW 230


>gi|218461621|ref|ZP_03501712.1| DNA polymerase III subunit epsilon [Rhizobium etli Kim 5]
          Length = 115

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/117 (52%), Positives = 83/117 (70%), Gaps = 2/117 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           DEFLKDK +F+ +  E   FF   +A+WIAHNA FD+GFINAE  RI   P+ P R+
Sbjct: 61  DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERV 115


>gi|304387081|ref|ZP_07369332.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           meningitidis ATCC 13091]
 gi|304338830|gb|EFM04933.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           meningitidis ATCC 13091]
 gi|325132669|gb|EGC55354.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M6190]
 gi|325138557|gb|EGC61120.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           ES14902]
 gi|325204491|gb|ADY99944.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M01-240355]
          Length = 244

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 126/235 (53%), Gaps = 13/235 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            + L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IQVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M     Q +
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                 E++    E K V +    +  K    R  + EL EH + +  LG+  IW
Sbjct: 179 LMGAAAEEKM---ETKPVVHTETKRSGKLKVIRADENELAEHGQYLDGLGEACIW 230


>gi|329118044|ref|ZP_08246757.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465932|gb|EGF12204.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 247

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/245 (34%), Positives = 130/245 (53%), Gaps = 26/245 (10%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL S + DRI+E   +E+     T RT  +++ P+ R    EA  +HGIT
Sbjct: 5   RQIILDTETTGLYSDRGDRILEFAGIEMRKRRLTERTLHLYIHPD-RDIPEEAAAVHGIT 63

Query: 67  DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            + L +K  P F+++  E  DF   + AE I HNA+FDVGF++ E +R+    ++     
Sbjct: 64  LDTLAEKNAPKFAAVGQEIADFL--RGAELIIHNARFDVGFLDMEFERMGLPTIEELGCE 121

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM------MV 176
           + DTL++AR K+P  +  L++LC R  I  S R  HGAL+D  LL++VY+ M      +V
Sbjct: 122 VTDTLAMAREKYPGQKASLDALCGRLDIDRSKRVYHGALIDCELLAEVYLAMTREQFDLV 181

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH----DKTIQTLG 232
           GGS  N     N D   +  +   P   L++  +    +    EL  H    D+  Q  G
Sbjct: 182 GGSDDN-----NGDTPAQNTRTAAP---LVRTGRLKVIKADATELAAHAAILDEINQATG 233

Query: 233 KNAIW 237
            + +W
Sbjct: 234 GHCLW 238


>gi|325134669|gb|EGC57309.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M13399]
          Length = 244

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 13/235 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M     Q +
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                 E++    E K V +    +  K    R  + EL  H + +  LG+  IW
Sbjct: 179 LMGAAAEEKM---ETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIW 230


>gi|121635185|ref|YP_975430.1| DNA polymerase III, epsilon chain [Neisseria meningitidis FAM18]
 gi|120866891|emb|CAM10650.1| DNA polymerase III, epsilon chain [Neisseria meningitidis FAM18]
          Length = 253

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 13/235 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 13  RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 71

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 72  IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 129

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M     Q +
Sbjct: 130 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 187

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                 E++    E K V +    +  K    R  + EL  H + +  LG+  IW
Sbjct: 188 LMGAAAEEKM---ETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIW 239


>gi|262368670|ref|ZP_06061999.1| ribonuclease HI [Acinetobacter johnsonii SH046]
 gi|262316348|gb|EEY97386.1| ribonuclease HI [Acinetobacter johnsonii SH046]
          Length = 474

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 113/178 (63%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   ++ DRIIE+GA+E+++   T  +  +++ P  +K   ++  +HGI+
Sbjct: 247 RQLILDTETTGFYYQDGDRIIEVGAIEMVNRKLTGSSIHIYINP--KKPVGDSENVHGIS 304

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           D+FLKDKP +  I    + +   + AE IAHNA FD+ F++ E +R     L +   + D
Sbjct: 305 DDFLKDKPLYQEIADTLFAYL--KGAEIIAHNASFDMNFLDMEFKRAGFVALSEVCAVTD 362

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +L+DVY+ M   G Q++F
Sbjct: 363 TLAMAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILADVYLAMT--GGQVSF 418


>gi|332967672|gb|EGK06783.1| DNA-directed DNA polymerase III epsilon subunit [Kingella kingae
           ATCC 23330]
          Length = 252

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 132/244 (54%), Gaps = 20/244 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           + +  +R+I+ D ETTG +       DR+IE   +E+++   T     +++ P  R  +P
Sbjct: 1   MTETPIRQIILDTETTGFEHSAAENPDRMIEFAGLEMVNRQFTKNNLHLYIHPQ-RDINP 59

Query: 58  EALKLHGITDEFLK--DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           +A+ +HGIT E L+  + P F+ +  + +DF   + AE I HNAKFDVGF++AE  R+  
Sbjct: 60  DAIAVHGITLEKLESENAPVFAEVAQQIFDFI--KGAELIIHNAKFDVGFLDAEFARVGL 117

Query: 116 DPLDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +     ++DTL +AR ++P  +N L++LC R  +  S R  HGAL+D  LL +VY+ M
Sbjct: 118 PKVKTICTVVDTLEMARDRYPGQKNSLDALCNRLDVDRSRRVLHGALIDCELLGEVYLAM 177

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNIS----LLKRDKPL-FTRITKEELDEHDKTIQ 229
             G   ++  F ++       E    P I+    LL R + L     + EEL EH++ + 
Sbjct: 178 TRGQFSLDAAFASD-----VAESSASPVIATTATLLPRPEYLKVQAASPEELAEHEEYLN 232

Query: 230 TLGK 233
            L K
Sbjct: 233 QLDK 236


>gi|15677367|ref|NP_274522.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|7226758|gb|AAF41870.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|261392239|emb|CAX49759.1| DNA polymerase III epsilon subunit [Neisseria meningitidis 8013]
 gi|308389659|gb|ADO31979.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha710]
 gi|316986028|gb|EFV64965.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76]
 gi|325130586|gb|EGC53333.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           OX99.30304]
 gi|325136592|gb|EGC59193.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M0579]
 gi|325140658|gb|EGC63175.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis CU385]
 gi|325199883|gb|ADY95338.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76]
 gi|325201794|gb|ADY97248.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M01-240149]
 gi|325208453|gb|ADZ03905.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 244

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 125/235 (53%), Gaps = 13/235 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            + L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IQVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M     Q +
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                 E++    E K V +    +  K    R  + EL  H + +  LG+  IW
Sbjct: 179 LMGAAAEEKM---ETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIW 230


>gi|330903518|gb|EGH34090.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 147

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 90/142 (63%), Gaps = 7/142 (4%)

Query: 40  TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
           T R F V+L P+ R++   A+ +HGIT+EFL  KP F+ +  EF++F   + A+ I HNA
Sbjct: 6   TGRHFHVYLQPD-RESDEGAIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNA 62

Query: 100 KFDVGFINAELQRIN----KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR 155
            FDVGFIN E   +      D      ++DTL +AR +HP  RN L++LCKRYG+  S R
Sbjct: 63  AFDVGFINNEFALMGSQDRADITQHCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSGR 122

Query: 156 SKHGALLDSHLLSDVYIKMMVG 177
             HGALLDS +L+DVY+ M  G
Sbjct: 123 ELHGALLDSEILADVYLAMTGG 144


>gi|261377592|ref|ZP_05982165.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685]
 gi|269146340|gb|EEZ72758.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685]
          Length = 244

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 126/235 (53%), Gaps = 13/235 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYIHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IEVLEGKNAPPFARVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I DTLS+AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M     Q +
Sbjct: 121 ITDTLSMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--QQFD 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
              +  E+       K V +  +    K    +  + EL  H++ +  LG++ IW
Sbjct: 179 LMGEAEEE---GPAAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGESCIW 230


>gi|59801359|ref|YP_208071.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA 1090]
 gi|240080918|ref|ZP_04725461.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA19]
 gi|268597034|ref|ZP_06131201.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
 gi|59718254|gb|AAW89659.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA 1090]
 gi|268550822|gb|EEZ45841.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
          Length = 244

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 128/235 (54%), Gaps = 13/235 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            + L++K  P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M     Q +
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
              +T E+   +   K V +  +    K    +  + EL  H++ +  LG+  IW
Sbjct: 179 LMGETEEE---EPTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIW 230


>gi|349620|gb|AAA17435.1| DNA polymerase III epsilon subunit [Buchnera aphidicola]
          Length = 179

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/178 (47%), Positives = 112/178 (62%), Gaps = 11/178 (6%)

Query: 5   NKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R IV D ETTG++S      N RIIEIGA+E+++   T + F  ++ PN R    +A
Sbjct: 3   NTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN-RLIESDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGITD+FL DKPSF  I  +F+++   +N+E I HNA FDVGFIN E   + K   D
Sbjct: 62  SKIHGITDDFLSDKPSFKDIAKDFFNYI--KNSELIIHNASFDVGFINQEFSMLTKKIQD 119

Query: 120 PSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            S    IIDTL IAR+  P  +N L++LC RY I  SHR  HGA+LD+ LL  +Y+ M
Sbjct: 120 ISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGKLYLLM 177


>gi|196003864|ref|XP_002111799.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens]
 gi|190585698|gb|EDV25766.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens]
          Length = 289

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 104/171 (60%), Gaps = 5/171 (2%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R++V D ETTGL  +   RIIEIG +EL+D+  T+RTFQ ++ P     S  A ++H +
Sbjct: 13  LREVVLDTETTGLSVRTGHRIIEIGCLELIDHQPTSRTFQCYINPKF-PVSERAFEVHHL 71

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +++FL+  P+F  I  +F DF  E     I HN  FD+ FIN E Q++N   +   R+ID
Sbjct: 72  SNKFLEGFPTFDGIVQDFRDFIQEDT--LIIHNGHFDIKFINNEFQKLNIPEISFERVID 129

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRS-KHGALLDSHLLSDVYIKMM 175
           T+ +AR+ +P     L+SLC R+ I  S RS  HGAL D  LL  VY K++
Sbjct: 130 TMLMARKLYPRQPASLDSLCDRFNIDKSSRSLGHGALTDVKLLQLVYAKLL 180


>gi|332978349|gb|EGK15074.1| DNA polymerase III, epsilon subunit [Psychrobacter sp. 1501(2011)]
          Length = 577

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/177 (37%), Positives = 107/177 (60%), Gaps = 5/177 (2%)

Query: 3   RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R    R+++ D ETTGLD+ K DR+IE+G +EL++   T     V++ P  R    E ++
Sbjct: 301 RGKTGRQLIMDTETTGLDALKGDRVIEVGIIELVNRKFTGEKLHVYINPE-RGMDDEVIR 359

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDP 120
           +HGIT+ FL DKP F  +    ++F     AE IAHNA FD+ F++ E  R+   D  + 
Sbjct: 360 VHGITEAFLADKPKFKEVAKPLYEFM--LGAELIAHNAPFDMSFLSMEFDRVGLSDFAEK 417

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             + D+L +A++++P  +N L++L +R  +    R+ HGALLDS +L++VY+ M  G
Sbjct: 418 VTVTDSLVMAKQQYPGQKNTLDALVRRLNVGKMDRTFHGALLDSEILAEVYLAMTGG 474


>gi|194098390|ref|YP_002001448.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998794|ref|ZP_04718718.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           35/02]
 gi|240112723|ref|ZP_04727213.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           MS11]
 gi|240115471|ref|ZP_04729533.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID18]
 gi|240123321|ref|ZP_04736277.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID332]
 gi|240128023|ref|ZP_04740684.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493581|ref|ZP_05106752.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291]
 gi|260440719|ref|ZP_05794535.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           DGI2]
 gi|268594640|ref|ZP_06128807.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268598788|ref|ZP_06132955.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11]
 gi|268601147|ref|ZP_06135314.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18]
 gi|268681945|ref|ZP_06148807.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332]
 gi|268686413|ref|ZP_06153275.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035]
 gi|291044028|ref|ZP_06569744.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2]
 gi|293399220|ref|ZP_06643385.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62]
 gi|193933680|gb|ACF29504.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512621|gb|EEH61966.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291]
 gi|268548029|gb|EEZ43447.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268582919|gb|EEZ47595.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11]
 gi|268585278|gb|EEZ49954.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18]
 gi|268622229|gb|EEZ54629.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332]
 gi|268626697|gb|EEZ59097.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035]
 gi|291012491|gb|EFE04480.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2]
 gi|291610634|gb|EFF39744.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62]
 gi|317164085|gb|ADV07626.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 244

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 128/235 (54%), Gaps = 13/235 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            + L++K  P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M     Q +
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
              +T E+   +   K V +  +    K    +  + EL  H++ +  LG+  IW
Sbjct: 179 LMGETEEE---EPTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIW 230


>gi|254456100|ref|ZP_05069529.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083102|gb|EDZ60528.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 220

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 106/170 (62%), Gaps = 5/170 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+++V D ETTG+  K   RI+EIG +EL +   T   F  +L P  RK S +AL++HG 
Sbjct: 1   MKEVVLDTETTGISVKEGHRIVEIGCIELDNLIPTKNRFHCYLNPE-RKVSEKALEVHGY 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDEFL ++  FS I  +F  F   ++   I HNA+FD+G +N EL    K  ++ + I+D
Sbjct: 60  TDEFLSEQKKFSDIGEQFLAFI--KDKRLIIHNAEFDLGHLNNELSIFGKKKIN-NEIVD 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR K P S   L++LCKRY I  S R++H AL+D  LLS VYI ++
Sbjct: 117 TLILARDKFPGSPVSLDALCKRYRIDNSIRTQHTALIDCDLLSKVYINLI 166


>gi|294788746|ref|ZP_06753987.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC
           29453]
 gi|294483228|gb|EFG30914.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC
           29453]
          Length = 272

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 104/182 (57%), Gaps = 8/182 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           MI     R+I+ D ETTGL +      DR+IE   +E+++   T R   + + P  R+ S
Sbjct: 1   MILDKDKRQIILDTETTGLYANAAENPDRLIEFAGLEMMNRQLTGRNLHLLIHPQ-REIS 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            EA  +H IT   L DKP F+ +  + +DF   + AE I HNAKFDVGF+NAE  R+   
Sbjct: 60  EEATAVHNITLSQLVDKPIFAQVAQQIFDFI--KGAELIIHNAKFDVGFLNAEFARVGLP 117

Query: 117 PLDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++    I DTL +A+  +   +N L++LC R G+  S R  HGAL+D  LLS+VY+ M 
Sbjct: 118 NVETICEITDTLEMAKNLYHGQKNSLDALCNRLGVDRSKRVFHGALIDCELLSEVYLGMT 177

Query: 176 VG 177
            G
Sbjct: 178 RG 179


>gi|330901691|gb|EGH33110.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 209

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 112/188 (59%), Gaps = 9/188 (4%)

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           R++   A+ +HGIT+EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   
Sbjct: 4   RESDEGAIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFAL 61

Query: 113 I-NKDPLDPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           + ++D  D ++   ++DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+
Sbjct: 62  MGSQDRADITQHCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILA 121

Query: 169 DVYIKMMVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRD-KPL-FTRITKEELDEHD 225
           DVY+ M  G + ++  G  ++ +   +        I  L  D KP    R ++ EL EH+
Sbjct: 122 DVYLAMTGGQTSLSLAGNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAEHE 181

Query: 226 KTIQTLGK 233
             + T+ K
Sbjct: 182 VRMSTIAK 189


>gi|254670687|emb|CBA06809.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha153]
          Length = 244

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 125/235 (53%), Gaps = 13/235 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M    ++  
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRRQ 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           F     E    +   K V +  +    K    +  + EL  H+K +  LG+  IW
Sbjct: 177 FDL-MGEAEEEEPAAKPVASAEMKLGAKLKVIKADEAELAAHEKYLDGLGEACIW 230


>gi|240016725|ref|ZP_04723265.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA6140]
          Length = 244

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 126/235 (53%), Gaps = 13/235 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            + L++K  P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL+IAR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M    ++  
Sbjct: 121 VTDTLAIAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRRQ 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           F     E    +   K V +  +    K    +  + EL  H++ +  LG+  IW
Sbjct: 177 FDL-MGETEEEETTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIW 230


>gi|257454857|ref|ZP_05620108.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
           epsilon subunit [Enhydrobacter aerosaccus SK60]
 gi|257447790|gb|EEV22782.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
           epsilon subunit [Enhydrobacter aerosaccus SK60]
          Length = 595

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 5/172 (2%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG +++N DRIIE+G VE+++   T     V++ P       E +++HGI 
Sbjct: 366 RQLILDTETTGFEAQNGDRIIEVGIVEMINRRFTGEKLHVYINPKIEMGE-EVIRVHGIH 424

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125
           + FL D P F  +    +DF   Q AE IAHNA FD+ F+ AE  R+    ++ +  + D
Sbjct: 425 NAFLNDMPVFEQVGEAIYDFL--QGAELIAHNAGFDMSFLQAEFARLGLPDINQTVTVTD 482

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +L+IA+R     RN L++L KR  +    R+ HGALLD+ +L++VY+ M  G
Sbjct: 483 SLAIAKRMFAGQRNTLDALVKRLNVGKQDRTFHGALLDAEILAEVYLAMTGG 534


>gi|240014290|ref|ZP_04721203.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           DGI18]
 gi|240117765|ref|ZP_04731827.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID1]
 gi|240121853|ref|ZP_04734815.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID24-1]
 gi|240125570|ref|ZP_04738456.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           SK-92-679]
 gi|268603465|ref|ZP_06137632.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1]
 gi|268684159|ref|ZP_06151021.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679]
 gi|268587596|gb|EEZ52272.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1]
 gi|268624443|gb|EEZ56843.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679]
          Length = 244

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 13/235 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            + L++K  P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M    ++  
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRRQ 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           F     E    +   K V +  +    K    +  + EL  H++ +  LG+  IW
Sbjct: 177 FDL-MGETEEEETTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIW 230


>gi|265993833|ref|ZP_06106390.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str.
           Ether]
 gi|262764814|gb|EEZ10735.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str.
           Ether]
          Length = 143

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/144 (41%), Positives = 90/144 (62%), Gaps = 4/144 (2%)

Query: 101 FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
           FD+GFINAEL R+++  +    I+DTL++ARRKHP   N L++LCKRYGI  SHR+ HGA
Sbjct: 2   FDLGFINAELARLDQAEITSEHIVDTLALARRKHPIGPNSLDALCKRYGIDNSHRTLHGA 61

Query: 161 LLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEK--KTVPNISLLKRDKPLFTRITK 218
           LLD+ +L++VYI+ ++GG Q   G          + +   + P + L  R +PL  RI+ 
Sbjct: 62  LLDAQILAEVYIE-LIGGKQTALGLTMESGSAGGDSRGNGSAP-VVLAARPRPLPPRISD 119

Query: 219 EELDEHDKTIQTLGKNAIWDRYIS 242
            E   H   ++ +G  A+W +Y+S
Sbjct: 120 AERAAHAALVEKMGDKAVWKKYLS 143


>gi|218768496|ref|YP_002343008.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491]
 gi|254805280|ref|YP_003083501.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           alpha14]
 gi|121052504|emb|CAM08843.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491]
 gi|254668822|emb|CBA06831.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           alpha14]
 gi|319410744|emb|CBY91127.1| DNA polymerase III epsilon subunit [Neisseria meningitidis WUE
           2594]
 gi|325127153|gb|EGC50103.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis N1568]
          Length = 244

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 13/235 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M    ++  
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRRQ 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           F     E    +   K V +  +    K    +  + EL  H + +  LG+  IW
Sbjct: 177 FDL-MGEAEEEEPAAKPVASAEMKLGAKLKVIKADEAELAAHGQYLDGLGEACIW 230


>gi|325205739|gb|ADZ01192.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M04-240196]
          Length = 244

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 13/235 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M    ++  
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRRQ 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           F     E    +   K V +  +    K    +  + EL  H + +  LG+  IW
Sbjct: 177 FDL-MGEAEEEEPAAKPVASAEMKLGAKLKVIKADEAELAAHGQYLDGLGEACIW 230


>gi|225024402|ref|ZP_03713594.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC
           23834]
 gi|224942783|gb|EEG23992.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC
           23834]
          Length = 240

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 101/171 (59%), Gaps = 6/171 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+I+ D ETTG    ++DR+IE   +E++D   T     +++ P  R    EA K+HGI
Sbjct: 4   LRQIILDTETTGFYYDRDDRLIEFAGLEMIDRRLTGNYLHLYVHPE-RDIPEEAAKVHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T + L+ KP F+ I  +  DF      E + HNA FDVGF+NAE +R     ++   + +
Sbjct: 63  TLDQLEGKPKFAEIGQQIADFI--AGTELVIHNAPFDVGFLNAEFRRAGLPSVEELTANV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +DTL +AR  +P  +N L++LC R  +  S R  HGAL+D  LLS+VY+ M
Sbjct: 121 VDTLVMARAMYPGQKNSLDALCTRLEVDRSKRVFHGALIDCELLSEVYLGM 171


>gi|296113099|ref|YP_003627037.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
 gi|295920793|gb|ADG61144.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
 gi|326560092|gb|EGE10482.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 46P47B1]
 gi|326560475|gb|EGE10857.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 7169]
 gi|326561678|gb|EGE12015.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 103P14B1]
 gi|326564194|gb|EGE14430.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 12P80B1]
 gi|326565793|gb|EGE15955.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC1]
 gi|326570446|gb|EGE20486.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC8]
 gi|326571129|gb|EGE21153.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC7]
 gi|326573423|gb|EGE23391.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 101P30B1]
 gi|326575681|gb|EGE25604.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis CO72]
 gi|326577147|gb|EGE27041.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis O35E]
          Length = 432

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 105/177 (59%), Gaps = 5/177 (2%)

Query: 3   RKNKMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R    R+++ D ETTG  ++  DRI+E+G VEL+    T     V++ P  +      ++
Sbjct: 207 RDAPERQLIMDTETTGFNEAGGDRIVEVGIVELVGRKFTGNILHVYINPE-KHMDDAVIQ 265

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI++ F+ DKP F+ +  + ++F     +E IAHNA FD+ F+N E  R        S
Sbjct: 266 VHGISNAFVADKPKFAEVAQQIYEFM--AGSEVIAHNAAFDMKFLNMEFNRAGLSNFANS 323

Query: 122 -RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            ++ DTL++A++ +P  +N L++L KR G+    R+ HGALLDS +L++VY+ M  G
Sbjct: 324 VKVTDTLALAKQMYPGQKNSLDALVKRLGVGQKDRTFHGALLDSEILAEVYLAMTGG 380


>gi|330999159|ref|ZP_08322878.1| putative DNA polymerase III, epsilon subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|329575359|gb|EGG56903.1| putative DNA polymerase III, epsilon subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 248

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 9/157 (5%)

Query: 22  KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFS 81
           + DRIIEIG VEL ++  T++ F  ++ P  R+   E +++H IT+EFL  KP F+ I  
Sbjct: 5   EGDRIIEIGCVELGEHGLTDKNFHEYIDPE-RQMEAEVIRVHKITNEFLVGKPKFADIAD 63

Query: 82  EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----SRIIDTLSIARRKHPSS 137
           +F +F   Q A  I HNA+FD+GF+N EL+++ K  ++       IID++ +A+   P  
Sbjct: 64  KFIEFV--QGARLIIHNAQFDIGFLNEELRKLGKPSMEEICGKDNIIDSMELAKAAFPQM 121

Query: 138 RNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYI 172
            N L++LCKR  I  + R K  HGALLD+ LL  VY+
Sbjct: 122 HNSLDALCKRLEIDTTRRVKEGHGALLDAELLGQVYL 158


>gi|323191554|gb|EFZ76814.1| DNA polymerase III subunit epsilon domain protein [Escherichia coli
           RN587/1]
          Length = 155

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 93/151 (61%), Gaps = 11/151 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNATFDIGFMDYEFSLLKRDIPKTNT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150
             ++ D+L++AR+  P  RN L++LC RY I
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEI 154


>gi|213021700|ref|ZP_03336147.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213612768|ref|ZP_03370594.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 164

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 95/157 (60%), Gaps = 11/157 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
             ++ D+L++AR+  P  RN L++LC RY I  S R+
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRT 163


>gi|71281267|ref|YP_268980.1| DNA polymerase III, epsilon subunit [Colwellia psychrerythraea 34H]
 gi|71147007|gb|AAZ27480.1| DNA polymerase III, epsilon subunit [Colwellia psychrerythraea 34H]
          Length = 256

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 129/246 (52%), Gaps = 28/246 (11%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-----PEALK 61
           R I+ D ETTG++ +   RI+EIG VE+++   T RT+  ++ P  ++        E + 
Sbjct: 15  RLIILDTETTGINPREGHRIVEIGCVEMINRQLTGRTYHAYIKPLDQRGQVFQMEQEVIN 74

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN------- 114
           +HG+T+EFL DKP FS +  EF DF   + AE + HN+KFDVGF++ E    N       
Sbjct: 75  IHGLTNEFLADKPIFSQVVHEFIDFI--RGAELVIHNSKFDVGFMDHEFSLFNSMGRSQD 132

Query: 115 KDPL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVY 171
           K P+  D   I DTL +++ +  S +  L+ L + Y +  +  R+ HGAL+D+ LL+ VY
Sbjct: 133 KVPMTEDICTITDTLKVSKDELGSPKT-LDYLARFYRVDKLVDRTYHGALIDAQLLAYVY 191

Query: 172 IKMMVGGSQINF--GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
           I+M    S  N   G  TN D         +  +S   R+K      + +EL  H + + 
Sbjct: 192 IEMTRKQSSFNLSSGDGTNAD------ANAIRRVS-STRNKLKVIAASADELVAHTERVA 244

Query: 230 TLGKNA 235
            +GK  
Sbjct: 245 VIGKKG 250


>gi|294670031|ref|ZP_06734988.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308152|gb|EFE49395.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 244

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 99/172 (57%), Gaps = 8/172 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL + + DR++E   +E+     T     +++ P+ R    EA  +HGIT
Sbjct: 5   RQIILDTETTGLYADRGDRMLEFAGIEMKKRQLTMNNLHLYIHPD-RDIPEEAAAVHGIT 63

Query: 67  DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L+++  P F  +  +  DF   + AE I HNA+FDVGF+N E  R+    ++     
Sbjct: 64  LEQLEERNAPKFEQVGRQIADFL--RGAELIIHNARFDVGFLNMEFARMGLPSIEELDCE 121

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           I DTL++AR K P  +  L++LC R  +  S R  HGAL+D  LL++VY+ M
Sbjct: 122 ITDTLAMAREKFPGQKASLDALCSRLDVDRSKRVLHGALIDCELLAEVYLAM 173


>gi|116334989|ref|YP_802484.1| DNA polymerase III epsilon subunit [Candidatus Carsonella ruddii
           PV]
 gi|116235270|dbj|BAF35118.1| DNA polymerase III epsilon subunit [Candidatus Carsonella ruddii
           PV]
          Length = 181

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 105/172 (61%), Gaps = 8/172 (4%)

Query: 7   MRKIVF-DIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M++I+F D+ETTGL  ++ DRIIEIG VE+++   T R F  +  P   K +  A  +HG
Sbjct: 1   MKRIIFLDVETTGLFVEHGDRIIEIGCVEVINGHLTGRVFHSYFNPE-VKITQGAFNVHG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPS 121
           I D+FL  KP F    +EF  F N  N+  IAHNAKFD+ FIN E+   N   K   + +
Sbjct: 60  IKDDFLLLKPMFYEKINEFIGFIN--NSTIIAHNAKFDINFINKEIYLTNFKIKKIQNYA 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            I+D+L + R+ +P  +N+LN LC ++ +  + +  HGAL D+ LL+ + IK
Sbjct: 118 NILDSLLLFRKLYPRKKNNLNDLCLKFNLIKNKKRIHGALNDAFLLAVLIIK 169


>gi|148244527|ref|YP_001219221.1| DNA polymerase III epsilon subunit [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326354|dbj|BAF61497.1| DNA polymerase III epsilon subunit [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 223

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/178 (41%), Positives = 112/178 (62%), Gaps = 8/178 (4%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGI 65
           R IV D ETTG+  S+  RIIEIG +E++D   T N  +  ++ PN  +N  +++++HGI
Sbjct: 3   RLIVLDTETTGIKPSEGHRIIEIGCIEIIDRQITKNNKYHEYIQPN--RNVGDSVRIHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLDPSRI 123
           TD+FL  KP F  +  EF  +  E     I HNA FD+GF+N EL+   IN+   D   I
Sbjct: 61  TDKFLTKKPKFKEVVEEFLAYIKE--TTLIIHNAPFDLGFLNHELKLIGINERIEDKCTI 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ID+L +++++ P + ++L+SLC+R+ I  S R+ HGALLD  +L+ VY+ M  G S +
Sbjct: 119 IDSLELSKQQRPGTLHNLDSLCRRFKIDSSARTVHGALLDVQILAQVYLAMTGGQSTL 176


>gi|190576387|ref|YP_001974232.1| putative exonuclease [Stenotrophomonas maltophilia K279a]
 gi|190014309|emb|CAQ47956.1| putative exonuclease [Stenotrophomonas maltophilia K279a]
          Length = 169

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 97/167 (58%), Gaps = 9/167 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D ETTG+  +   R+IEIGAVEL+D   T R F  +L P  RK    A ++HGI+
Sbjct: 3   RIVALDTETTGISHRLGHRVIEIGAVELIDGQLTGRQFHTYLQPQ-RKVDWGAQRVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSRI 123
           D  L  KP FSS  +E  +F   + +E +AHNA FDVGF++ EL R++  P       RI
Sbjct: 62  DAMLVGKPLFSSKAAELLEFL--RGSEMVAHNATFDVGFLDNEL-RLSGIPGTLAQHCRI 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             +L +AR + P   N L+ + +R  I  S R  HGAL D+HLL+ V
Sbjct: 119 TCSLKLARGRWPGQGNKLDDVLQRLRIP-SQRGLHGALKDAHLLAQV 164


>gi|194367724|ref|YP_002030334.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
           R551-3]
 gi|194350528|gb|ACF53651.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 169

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 96/167 (57%), Gaps = 9/167 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D ETTG+  +   R+IEIGAVEL+D   T R F  +L P  RK    A ++HGI+
Sbjct: 3   RIVALDTETTGISHRLGHRVIEIGAVELIDGQLTGRQFHTYLQPQ-RKVDWGAQRVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSRI 123
           D  L  KP FSS  +E  DF   + +E +AHNA FDVGF++ EL R+   P       RI
Sbjct: 62  DAMLVGKPLFSSKAAELLDFL--RGSEMVAHNATFDVGFLDNEL-RLAGIPGTLAQHCRI 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             +L +AR + P   N L+ + +R  I   +R  HGAL D+HLL+ V
Sbjct: 119 TCSLKLARGRWPGQGNKLDDVLQRLRIP-GNRGLHGALKDAHLLAQV 164


>gi|116515093|ref|YP_802722.1| DNA polymerase III, e subunit [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256947|gb|ABJ90629.1| DNA polymerase III, e subunit [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 231

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/192 (39%), Positives = 115/192 (59%), Gaps = 12/192 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI+KN +R++  DIETTG++       N +IIEIG +E ++   T R    +L P  R  
Sbjct: 1   MIKKN-LRQVFLDIETTGMNKYGCIYLNHKIIEIGIIETINRKYTGRYIHYYLYPQ-RSI 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE--LQRI 113
              A K+HGI++ FL +KP+F  I+ E ++F   +N+E I HN+ FD+ F++ E  L  I
Sbjct: 59  ESSAYKIHGISESFLSNKPTFKDIYKEIFNFI--KNSEIIVHNSNFDISFLDYEFFLLNI 116

Query: 114 NKDPLDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             + +   S I DTL IAR+  P  +N+L++LC RY IT  +R+ H ALLD+ +L  +Y+
Sbjct: 117 GINKIKTFSTITDTLFIARKLFPGKKNNLDALCARYKITNINRNFHSALLDAKILMKLYM 176

Query: 173 KMMVGGSQINFG 184
            M     +INF 
Sbjct: 177 YMTSIQKEINFS 188


>gi|319779077|ref|YP_004129990.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9]
 gi|317109101|gb|ADU91847.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9]
          Length = 239

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 133/242 (54%), Gaps = 26/242 (10%)

Query: 7   MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  K+  R+IE+G  E++D   T    Q++  P  R+   EALK+HGI
Sbjct: 1   MRQICLDTETTGLSWKDGHRVIELGCCEIIDGLLTGNNLQIYFNPE-REVDEEALKVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SR 122
           ++EFL DKP FS    +  ++   ++A+ + HNA+FD+GF+N EL    K  L+    + 
Sbjct: 60  SNEFLSDKPLFSDKADKIIEYL--KDAQLVIHNAEFDMGFLNYELSLCGKPKLETFIHNP 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITI-------SHRSKHGALLDSHLLSDVYIKMM 175
           +IDT  +AR    SS   + +L K Y   +       + R  HGALLD+ +L+ V+IK+ 
Sbjct: 118 VIDTRELARENGFSSA--VITLNKLYKDLVDESYKQNTDRELHGALLDAVMLAKVFIKLN 175

Query: 176 VGGSQI----NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
            G ++I    +   + ++D  F  +     NI L K +  L  + ++EE+  H+  I TL
Sbjct: 176 SGQNEIFLETSARSEASDDLGFSSQ-----NIDLSKLNLKLI-KASEEEIAAHNDYIATL 229

Query: 232 GK 233
            K
Sbjct: 230 SK 231


>gi|254522385|ref|ZP_05134440.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
 gi|219719976|gb|EED38501.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
          Length = 169

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 96/167 (57%), Gaps = 9/167 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D ETTG+  +   R+IEIGAVEL+D   T R F  +L P  RK    A ++HGI+
Sbjct: 3   RIVALDTETTGISHRLGHRVIEIGAVELIDGQLTGRQFHTYLQPQ-RKVDRGAQRVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSRI 123
           D  L  KP FSS  +E   F   + +E +AHNA FDVGF++ EL R++  P       RI
Sbjct: 62  DAMLVGKPLFSSKAAELLAFL--RGSEMVAHNATFDVGFLDNEL-RLSGIPGTLAQHCRI 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             +L +AR + P   N L+ + +R  I   +R  HGAL D+HLL+ V
Sbjct: 119 TCSLKLARGRWPGQGNKLDDVLQRLRIP-GNRGLHGALKDAHLLAQV 164


>gi|303258008|ref|ZP_07344017.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
           1_1_47]
 gi|330999422|ref|ZP_08323136.1| putative DNA polymerase III, epsilon subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|302859351|gb|EFL82433.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
           1_1_47]
 gi|329574848|gb|EGG56407.1| putative DNA polymerase III, epsilon subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 196

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 93/171 (54%), Gaps = 5/171 (2%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R N+ R+I  D ETTG+    DRI+E+ A+E+ D      +F  F+ P  RK      ++
Sbjct: 18  RANRKRRIFLDTETTGMSQATDRIVEVCAIEVDDDFNEIDSFHAFINPQ-RKVPWFVTRI 76

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HG+ +EFL DKP FS I  +   F   + +E  AHN  FD G +NAE  R     L+   
Sbjct: 77  HGLNNEFLDDKPIFSDIGRDLLLFL--EGSELWAHNMSFDAGMLNAEFARNRLPTLEKVD 134

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            R+  TL +AR   P  +N L++L  R+ I  S R  HGA++D+ LL  VY
Sbjct: 135 CRLNCTLQLARSTFPGQKNSLDALLDRFAIDRSERRLHGAMIDTRLLVKVY 185


>gi|297530567|ref|YP_003671842.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3]
 gi|297253819|gb|ADI27265.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3]
          Length = 1444

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 98/161 (60%), Gaps = 8/161 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + IIE+ AV++ D    +R F +F  P G   S   ++L GITDE 
Sbjct: 430 VVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMLFANP-GHPLSVTTMELTGITDEM 487

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P    + + F D+    +A  +AHNA FD+GF+NA L R+ +  +  + +IDTL +
Sbjct: 488 VKDAPKPDEVLARFVDWAG--DATLVAHNASFDIGFLNAGLARMGRGKI-ANPVIDTLEL 544

Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLL 167
           AR  +P  +N  LN+LCK++ I ++  HR+ + A    HLL
Sbjct: 545 ARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLL 585


>gi|257458230|ref|ZP_05623380.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580]
 gi|257444340|gb|EEV19433.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580]
          Length = 216

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 90/154 (58%), Gaps = 8/154 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD ETTGLD    RI+EIGAV+  D       + V + P       EA K++GITDE 
Sbjct: 17  IAFDTETTGLDPAAGRIVEIGAVKF-DRRGIAARYNVLINPE-IPMPEEAGKVNGITDEM 74

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LKDKP  +++F +F+DF        +AHNA FD+ +INAEL+RI K PL  ++++DT   
Sbjct: 75  LKDKPLIAAVFPDFFDFIG--TGVLVAHNAPFDINYINAELKRIGKSPLG-NKVVDTRIF 131

Query: 130 ARRKHPS-SRNDLNSLCKRYGITI--SHRSKHGA 160
           A+   P  S   L  L  ++GIT   +HR++  A
Sbjct: 132 AKEVFPGLSSYALQDLAVQFGITALEAHRAEDDA 165


>gi|319779076|ref|YP_004129989.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9]
 gi|317109100|gb|ADU91846.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9]
          Length = 186

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 110/193 (56%), Gaps = 27/193 (13%)

Query: 7   MRKIVFDIETTGLDSK---NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           MR +  D ETTG  SK     RIIE+G VE++   K+ R   ++  P+ R++   A ++H
Sbjct: 1   MRYVCLDTETTG--SKYYLGHRIIELGCVEVICGQKSGRELHMYFNPD-RRSDFGAFRVH 57

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPL 118
            I+DEFL DKP F+    E  DF     +  + HNA FD+GF+N E +     ++N+  +
Sbjct: 58  KISDEFLLDKPRFADCVDEIIDFL--YGSTLVIHNAPFDMGFLNYEFKISGQPKLNEFVV 115

Query: 119 DPSRIIDTLSIARRK-----HPSSRNDLNSLCKR-----YGITISHRSKHGALLDSHLLS 168
           D   +IDT+ + R K     HP+ R  L++L K      Y   + HR+ HGAL+D+ +L+
Sbjct: 116 D---VIDTVILGRMKLPKKLHPNQRYSLDALYKTLVRSDYNPAL-HRNPHGALIDARMLA 171

Query: 169 DVYIKMMVGGSQI 181
           D++I++ +G  +I
Sbjct: 172 DLFIRLNMGQEEI 184


>gi|222151098|ref|YP_002560252.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
 gi|222120221|dbj|BAH17556.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
          Length = 1434

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 103/168 (61%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           +VFD+ETTGL S+ D+IIE+ AV++ D    ++ F+ F  P  R N  E +K L GITD+
Sbjct: 419 VVFDVETTGLSSQYDKIIELAAVKVKDGEIIDK-FERFSNPGERLN--ETIKNLTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P   S+ ++F DF    +A ++AHNA FD+GFI+    R+   P + + +IDTL 
Sbjct: 476 MLIDAPPIESVLNDFKDFVG--DAIYVAHNASFDMGFIDTGFDRLGYGPTE-NGVIDTLE 532

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + +++KM+
Sbjct: 533 LSRTINTEMGKHGLNFLAKKYGVELTQH--HRAIYDAETTAHIFVKML 578


>gi|261419458|ref|YP_003253140.1| DNA polymerase III subunit chi [Geobacillus sp. Y412MC61]
 gi|319766273|ref|YP_004131774.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52]
 gi|261375915|gb|ACX78658.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61]
 gi|317111139|gb|ADU93631.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52]
          Length = 1444

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 97/161 (60%), Gaps = 8/161 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + IIE+ AV++ D    +R F  F  P G   S   ++L GITDE 
Sbjct: 430 VVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANP-GHPLSVTTMELTGITDEM 487

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P    + + F D+    +A  +AHNA FD+GF+NA L R+ +  +  + +IDTL +
Sbjct: 488 VKDAPKPDEVLARFVDWAG--DATLVAHNASFDIGFLNAGLARMGRGKI-ANPVIDTLEL 544

Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLL 167
           AR  +P  +N  LN+LCK++ I ++  HR+ + A    HLL
Sbjct: 545 ARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLL 585


>gi|56419793|ref|YP_147111.1| DNA polymerase III PolC [Geobacillus kaustophilus HTA426]
 gi|56379635|dbj|BAD75543.1| DNA-directed DNA polymerase III alpha chain [Geobacillus
           kaustophilus HTA426]
          Length = 1444

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 96/161 (59%), Gaps = 8/161 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + IIE+ AV++ D    +R F  F  P G   S   ++L GITDE 
Sbjct: 430 VVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANP-GHPLSVTTMELTGITDEM 487

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P    + + F D+    +A  +AHNA FD+GF+N  L R+ +  +  + +IDTL +
Sbjct: 488 VKDAPKPDEVLARFVDWAG--DATLVAHNASFDIGFLNTGLARMGRGKI-ANPVIDTLEL 544

Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLL 167
           AR  +P  +N  LN+LCK++ I ++  HR+ + A    HLL
Sbjct: 545 ARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLL 585


>gi|161870374|ref|YP_001599545.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 053442]
 gi|161595927|gb|ABX73587.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 053442]
          Length = 187

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 11/180 (6%)

Query: 62  LHGITDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +HG+T E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++
Sbjct: 1   MHGLTIEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVE 58

Query: 120 P--SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M   
Sbjct: 59  ELGCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR- 117

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
             Q +   +  E++    E K V +    +  K    R  + EL  H + +  LG+  IW
Sbjct: 118 -RQFDLMGEAAEEKM---ETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIW 173


>gi|262365378|gb|ACY61935.1| DNA polymerase III, epsilon chain [Yersinia pestis D182038]
          Length = 128

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 75/114 (65%), Gaps = 8/114 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           HGI+DEFL DKP+F+ I  EF DF   + AE + HNA FD+GF++ E + + +D
Sbjct: 66  HGISDEFLADKPTFADITPEFLDFI--RGAELVIHNAAFDIGFMDYEFRMLQQD 117


>gi|296132882|ref|YP_003640129.1| DNA polymerase III, alpha subunit [Thermincola sp. JR]
 gi|296031460|gb|ADG82228.1| DNA polymerase III, alpha subunit [Thermincola potens JR]
          Length = 1442

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 96/168 (57%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG     D IIEIGAV++      +R F  F+CP GR+  PE  +L GIT+  
Sbjct: 431 VVFDLETTGFSPVTDEIIEIGAVKIHGNKILDR-FSAFVCP-GREIPPEVQELTGITNNM 488

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLS 128
           + D P  + +  +F DF    +A  +AHNA+FD GF+ A +++I N+    P  ++DTL 
Sbjct: 489 VSDAPPIAEVLPKFIDFVG--DAVLVAHNAQFDTGFLRANMEKILNRTLAQP--VLDTLG 544

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   P  +N  L +L K + + + +   H A+ D+   + + IK +
Sbjct: 545 LARGLFPDMKNHKLKTLAKEFNVKLENH--HRAVDDAEATAQLLIKFL 590


>gi|313885310|ref|ZP_07819061.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619416|gb|EFR30854.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 1435

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 98/167 (58%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL S  D+IIE+ AV++ +  +   TF+ F+ PN +  S    +L GIT+  
Sbjct: 421 VVFDVETTGLSSVYDKIIELAAVKMKE-GQVIDTFEAFINPN-QPLSSFTTELTGITNAM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D P    +  +F+DF   QN   +AHNA FD+GF+N   +RI  +   P  +IDTL +
Sbjct: 479 VEDAPQEDVVLKDFYDF--SQNTILVAHNASFDIGFLNKGYERIGIEN-TPLPVIDTLEL 535

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +P  ++  LN+L KRYG+ +     H A+ DS     +  K++
Sbjct: 536 SRMVNPHLKSHRLNTLAKRYGVNLEQH--HRAVYDSETTGYLMYKLL 580


>gi|213162306|ref|ZP_03348016.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 145

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/136 (40%), Positives = 82/136 (60%), Gaps = 11/136 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D      
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 121 -SRIIDTLSIARRKHP 135
             ++ D+L++AR+  P
Sbjct: 127 FCKVTDSLALARKIVP 142


>gi|229544431|ref|ZP_04433489.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
 gi|229324916|gb|EEN90593.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
          Length = 1442

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 98/167 (58%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIEI AV++ D  +   TF+ F  P GR  S   ++L  ITD+ 
Sbjct: 428 VVFDVETTGLSAVYDTIIEIAAVKIQD-GEVVDTFERFANP-GRPLSNTIIELTHITDDM 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LKD P  S +  E+ ++    +A  +AHNA FD+GF+N  L++    P   + +IDTL +
Sbjct: 486 LKDAPDISEVLKEYNEWIG--DAVLVAHNASFDIGFLNVGLKKAGL-PKSNNPVIDTLEL 542

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R  +P  +N  LN+L K++ + ++    H A+ D+     +++KM+
Sbjct: 543 GRFLYPDFKNYRLNTLAKKFNVELTQH--HRAIYDTEATGQIFLKML 587


>gi|309807200|ref|ZP_07701174.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166421|gb|EFO68626.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 03V1-b]
          Length = 1424

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 8/196 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + L  ITDE 
Sbjct: 408 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 465

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++    + +  +F DF+  Q+     HN +FD+GF+NA L+R N D +    ++DTL +
Sbjct: 466 VQNADDENIVIRQFQDFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 522

Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +R  HP  +R+ L+SL K+Y + +   HR+   A    +L+  +         + N G  
Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 582

Query: 187 TNEDRFFKEEKKTVPN 202
            +  +F +  K+  PN
Sbjct: 583 NDYAKFGQVYKRAKPN 598


>gi|212639526|ref|YP_002316046.1| DNA polymerase III PolC [Anoxybacillus flavithermus WK1]
 gi|212561006|gb|ACJ34061.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Anoxybacillus flavithermus WK1]
          Length = 1430

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 98/161 (60%), Gaps = 8/161 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++ +    +R F+ F  P+    S   ++L  ITD+ 
Sbjct: 416 VVFDVETTGLSAVYDTIIELAAVKVKNGEIIDR-FESFANPH-HPLSATTIELTKITDDM 473

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LKD P    +  +F+ + +  +   +AHNA FD+GF+NA  ++IN+  +  + +IDTL +
Sbjct: 474 LKDAPDVEEVLEKFYHWID--DCVLVAHNATFDIGFLNAGFKKINRGKVT-NPVIDTLEL 530

Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLL 167
           AR  +P  +N  LN+LCK++ I ++  HR+ + A    +LL
Sbjct: 531 ARYLYPELKNHRLNTLCKKFNIELTQHHRAIYDAEATGYLL 571


>gi|319645959|ref|ZP_08000189.1| PolC protein [Bacillus sp. BT1B_CT2]
 gi|317391709|gb|EFV72506.1| PolC protein [Bacillus sp. BT1B_CT2]
          Length = 1463

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 98/177 (55%), Gaps = 7/177 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++       R F+ F  P+ R  S   ++L GITD+ 
Sbjct: 423 VVFDVETTGLSAVYDTIIELAAVKVKGGEIIER-FERFANPH-RPLSATIIELTGITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LKD P    +  +F ++  +     +AHNA FD+GFIN   +R+       + +IDTL +
Sbjct: 481 LKDAPEVEEVIRDFKEWVGDHT--LVAHNASFDIGFINVAYKRLLNSEKVQNPVIDTLEL 538

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            R  +P  +N  LN+LCK++ I ++    H A+ D+     + +KM+   ++ N  +
Sbjct: 539 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATGYLLVKMLKDAAEKNILY 593


>gi|52080261|ref|YP_079052.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52785638|ref|YP_091467.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52003472|gb|AAU23414.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC
           14580]
 gi|52348140|gb|AAU40774.1| PolC [Bacillus licheniformis ATCC 14580]
          Length = 1438

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 98/177 (55%), Gaps = 7/177 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++       R F+ F  P+ R  S   ++L GITD+ 
Sbjct: 423 VVFDVETTGLSAVYDTIIELAAVKVKGGEIIER-FERFANPH-RPLSATIIELTGITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LKD P    +  +F ++  +     +AHNA FD+GFIN   +R+       + +IDTL +
Sbjct: 481 LKDAPEVEEVIRDFKEWVGDHT--LVAHNASFDIGFINVAYKRLLNSEKVQNPVIDTLEL 538

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            R  +P  +N  LN+LCK++ I ++    H A+ D+     + +KM+   ++ N  +
Sbjct: 539 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATGYLLVKMLKDAAEKNILY 593


>gi|330984026|gb|EGH82129.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 234

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGIT-D 67
           +FD ETTGLD K  D+++E   VEL+D  KT R   ++  P  +++ P EA ++H ++ D
Sbjct: 1   MFDTETTGLDPKTGDKMVEAAFVELIDRKKTGRFLHLYFDP--KRDVPDEAREVHNLSRD 58

Query: 68  EF--LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           E   L     F     +  DF   + A  +AHN+KFD GF + E Q      L      I
Sbjct: 59  ELVRLSGGRVFGHFAQQIIDFI--KGATLVAHNSKFDEGFFDMEFQHAGYGKLSDYCESI 116

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMV 176
           ID+L++A  K P  +N L++L + Y G     R  HGALLD+ LL+ VY+ M V
Sbjct: 117 IDSLAVASMKRPGRQNSLDALLREYVGTENYSREYHGALLDADLLAQVYLLMTV 170


>gi|325685948|gb|EGD28011.1| DNA polymerase III PolC [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 1402

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 86/149 (57%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+    S   + L  ITDE 
Sbjct: 384 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTINLTSITDEM 441

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++     + +  +F DF+   N     HN +FDVGF+NA L+R    P     ++DTL +
Sbjct: 442 VQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVNAALKRCGY-PEISQPVVDTLEV 498

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  SR+ L+SLC++Y + + H  +
Sbjct: 499 SRLLHPEQSRHTLDSLCRKYNVALEHHHR 527


>gi|313124033|ref|YP_004034292.1| DNA polymerase iii, alpha subunit (gram-positive type) (polc)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280596|gb|ADQ61315.1| DNA polymerase III, alpha subunit (Gram-positive type) (PolC)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 1445

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 86/149 (57%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+    S   + L  ITDE 
Sbjct: 427 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTINLTSITDEM 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++     + +  +F DF+   N     HN +FDVGF+NA L+R    P     ++DTL +
Sbjct: 485 VQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVNAALKRCGY-PEISQPVVDTLEV 541

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  SR+ L+SLC++Y + + H  +
Sbjct: 542 SRLLHPEQSRHTLDSLCRKYNVALEHHHR 570


>gi|309804220|ref|ZP_07698297.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
 gi|308163623|gb|EFO65893.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
          Length = 762

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + L  ITDE 
Sbjct: 408 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLL-SDTTINLTSITDEM 465

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +    ++DTL +
Sbjct: 466 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 522

Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +R  HP  +R+ L+SL K+Y + +   HR+   A    +L+  +         + N G  
Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 582

Query: 187 TNEDRFFKEEKKTVPN 202
            +  +F +  K+  PN
Sbjct: 583 NDYAKFGQVYKRAKPN 598


>gi|309805552|ref|ZP_07699597.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165203|gb|EFO67441.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
          Length = 758

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + L  ITDE 
Sbjct: 404 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLL-SDTTINLTSITDEM 461

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +    ++DTL +
Sbjct: 462 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 518

Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +R  HP  +R+ L+SL K+Y + +   HR+   A    +L+  +         + N G  
Sbjct: 519 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 578

Query: 187 TNEDRFFKEEKKTVPN 202
            +  +F +  K+  PN
Sbjct: 579 NDYAKFGQVYKRAKPN 594


>gi|221632241|ref|YP_002521462.1| DNA polymerase III subunit epsilon [Thermomicrobium roseum DSM
           5159]
 gi|221156344|gb|ACM05471.1| DNA polymerase III, epsilon subunit [Thermomicrobium roseum DSM
           5159]
          Length = 693

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 103/192 (53%), Gaps = 10/192 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTGL     RIIEIGAV   D     R F V + P+ R+     ++L GI DE 
Sbjct: 87  VALDVETTGLRPARHRIIEIGAVRYEDGCCVER-FSVLVNPH-RRLPVYIVRLTGIRDED 144

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   PSF  + + F  F  E     I +N  FD+ F+NAEL+RI + PL P+  +D L +
Sbjct: 145 LLTAPSFVDVAAAFRVFLGESTV--IGYNVGFDLDFLNAELRRIGQGPL-PNPALDVLPL 201

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           AR    +  R DL+++C+  G  ++  ++H AL D+   + +Y+ ++    Q+  G+++ 
Sbjct: 202 ARALLTANGRYDLDAICRSIG--LARGTRHRALPDAEATAVLYLHLVERAEQV--GYRSP 257

Query: 189 EDRFFKEEKKTV 200
            D      ++T+
Sbjct: 258 SDLQPAATRRTI 269


>gi|332976806|gb|EGK13634.1| DNA polymerase III PolC [Desmospora sp. 8437]
          Length = 1099

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 63/180 (35%), Positives = 104/180 (57%), Gaps = 12/180 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + +D IIE+ AV++ D    +R F+ F+ P+ RK +    +L GITDE 
Sbjct: 417 VVFDVETTGLSAVHDEIIELAAVKVKDGEIIDR-FESFINPH-RKLTATITELTGITDEM 474

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P  S +   + +F   +    +AHNA+FD+GF+ A  ++    P+D   ++DTL +
Sbjct: 475 VVDAPELSEVLPRYLEFI--EGTVLVAHNARFDMGFLQAACKKTGCQPVD-HPVLDTLEL 531

Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGA----LLDSHLLSDVYIKMMVGGSQIN 182
            R  +P  +N  LN+LCK++ I ++  HR+ + A     L   +L D   + +V   Q+N
Sbjct: 532 GRFLYPRLKNHRLNTLCKQFDIELTQHHRAIYDAEATGFLLWRMLQDCIERKIVRLDQLN 591


>gi|300812566|ref|ZP_07092983.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496439|gb|EFK31544.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 1402

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 86/149 (57%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+    S   + L  ITDE 
Sbjct: 384 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTINLTSITDEM 441

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++     + +  EF DF+   N     HN +FDVGF++A L+R    P     ++DTL +
Sbjct: 442 VQAADDEAVVIKEFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQPVVDTLEV 498

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  SR+ L+SLC++Y + + H  +
Sbjct: 499 SRLLHPEQSRHTLDSLCRKYNVALEHHHR 527


>gi|309808831|ref|ZP_07702716.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
 gi|308167957|gb|EFO70090.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
          Length = 946

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + L  ITDE 
Sbjct: 408 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 465

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +    ++DTL +
Sbjct: 466 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 522

Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +R  HP  +R+ L+SL K+Y + +   HR+   A    +L+  +         + N G  
Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 582

Query: 187 TNEDRFFKEEKKTVPN 202
            +  +F +  K+  PN
Sbjct: 583 NDYAKFGQVYKRAKPN 598


>gi|315653430|ref|ZP_07906352.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
 gi|315489355|gb|EFU78995.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
          Length = 1424

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + L  ITDE 
Sbjct: 408 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 465

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +    ++DTL +
Sbjct: 466 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 522

Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +R  HP  +R+ L+SL K+Y + +   HR+   A    +L+  +         + N G  
Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 582

Query: 187 TNEDRFFKEEKKTVPN 202
            +  +F +  K+  PN
Sbjct: 583 NDYAKFGQVYKRAKPN 598


>gi|289550944|ref|YP_003471848.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658446|ref|ZP_07911318.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
 gi|289180476|gb|ADC87721.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496775|gb|EFU85098.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
          Length = 1438

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 101/167 (60%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  P+ +K S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDQIIELAAVKVYDGEIIDK-FERFSNPH-QKLSETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +RI   P   + +IDTL +
Sbjct: 481 LTDAPEIDEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERIGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKML 582


>gi|312871361|ref|ZP_07731457.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 3008A-a]
 gi|312872402|ref|ZP_07732471.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311091984|gb|EFQ50359.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311093113|gb|EFQ51461.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 3008A-a]
          Length = 1420

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + L  ITDE 
Sbjct: 404 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 461

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +    ++DTL +
Sbjct: 462 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 518

Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +R  HP  +R+ L+SL K+Y + +   HR+   A    +L+  +         + N G  
Sbjct: 519 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 578

Query: 187 TNEDRFFKEEKKTVPN 202
            +  +F +  K+  PN
Sbjct: 579 NDYAKFGQVYKRAKPN 594


>gi|329919876|ref|ZP_08276814.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 1401G]
 gi|328936966|gb|EGG33396.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 1401G]
          Length = 1424

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + L  ITDE 
Sbjct: 408 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 465

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +    ++DTL +
Sbjct: 466 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 522

Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +R  HP  +R+ L+SL K+Y + +   HR+   A    +L+  +         + N G  
Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 582

Query: 187 TNEDRFFKEEKKTVPN 202
            +  +F +  K+  PN
Sbjct: 583 NDYAKFGQVYKRAKPN 598


>gi|325913471|ref|ZP_08175837.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 60-B]
 gi|325477240|gb|EGC80386.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 60-B]
          Length = 1424

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + L  ITDE 
Sbjct: 408 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 465

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +    ++DTL +
Sbjct: 466 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 522

Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +R  HP  +R+ L+SL K+Y + +   HR+   A    +L+  +         + N G  
Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 582

Query: 187 TNEDRFFKEEKKTVPN 202
            +  +F +  K+  PN
Sbjct: 583 NDYAKFGQVYKRAKPN 598


>gi|312873343|ref|ZP_07733396.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2052A-d]
 gi|311091133|gb|EFQ49524.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2052A-d]
          Length = 1420

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + L  ITDE 
Sbjct: 404 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 461

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +    ++DTL +
Sbjct: 462 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 518

Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +R  HP  +R+ L+SL K+Y + +   HR+   A    +L+  +         + N G  
Sbjct: 519 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 578

Query: 187 TNEDRFFKEEKKTVPN 202
            +  +F +  K+  PN
Sbjct: 579 NDYAKFGQVYKRAKPN 594


>gi|309809542|ref|ZP_07703400.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308170214|gb|EFO72249.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 1424

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + L  ITDE 
Sbjct: 408 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 465

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +    ++DTL +
Sbjct: 466 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 522

Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +R  HP  +R+ L+SL K+Y + +   HR+   A    +L+  +         + N G  
Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 582

Query: 187 TNEDRFFKEEKKTVPN 202
            +  +F +  K+  PN
Sbjct: 583 NDYAKFGQVYKRAKPN 598


>gi|259501583|ref|ZP_05744485.1| DNA polymerase III [Lactobacillus iners DSM 13335]
 gi|302191443|ref|ZP_07267697.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus iners
           AB-1]
 gi|259167101|gb|EEW51596.1| DNA polymerase III [Lactobacillus iners DSM 13335]
          Length = 1420

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + L  ITDE 
Sbjct: 404 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 461

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +    ++DTL +
Sbjct: 462 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 518

Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +R  HP  +R+ L+SL K+Y + +   HR+   A    +L+  +         + N G  
Sbjct: 519 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 578

Query: 187 TNEDRFFKEEKKTVPN 202
            +  +F +  K+  PN
Sbjct: 579 NDYAKFGQVYKRAKPN 594


>gi|312875787|ref|ZP_07735779.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2053A-b]
 gi|311088691|gb|EFQ47143.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2053A-b]
          Length = 1424

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + L  ITDE 
Sbjct: 408 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 465

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +    ++DTL +
Sbjct: 466 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 522

Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +R  HP  +R+ L+SL K+Y + +   HR+   A    +L+  +         + N G  
Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 582

Query: 187 TNEDRFFKEEKKTVPN 202
            +  +F +  K+  PN
Sbjct: 583 NDYAKFGQVYKRAKPN 598


>gi|229824076|ref|ZP_04450145.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
 gi|229786430|gb|EEP22544.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
          Length = 1435

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 94/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL S  DRIIE+ AV++ +  +   TF+ F+ P G   S    +L GITD  
Sbjct: 421 VVFDVETTGLSSVYDRIIELAAVKMRN-GEVIDTFEAFINP-GYHLSAMITELTGITDAM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P  + + + F +F   ++   +AHNA FD+GF+N    R+   P+    +IDTL +
Sbjct: 479 LADAPPEAEVMARFAEF--SKDTILVAHNASFDMGFLNKTYARLGM-PVPDQPVIDTLEL 535

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +P  R+  LN L K YG+T+     H A+ DS     V  K++
Sbjct: 536 SRLVNPDMRSHRLNVLAKHYGVTLEQH--HRAVYDSETTGYVCYKLL 580


>gi|317129167|ref|YP_004095449.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM
           2522]
 gi|315474115|gb|ADU30718.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM
           2522]
          Length = 1434

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 97/162 (59%), Gaps = 10/162 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGL +  + IIE+ AV++ +    +R F+ F  P+  K +P  + L GITD+ 
Sbjct: 421 IVFDVETTGLSAVYNTIIELAAVKVKNGEIVDR-FESFANPH-EKLTPLIIDLTGITDDM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +++ P    +  +F ++    +A  +AHNA FD+GFINA  Q+I      +P  +IDTL 
Sbjct: 479 VENAPEVDDVLKDFHEWIG--DATLVAHNASFDMGFINAGFQKIGYGHATNP--VIDTLE 534

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           + R  +P+ +N  LN+LCK++ I +   HR+ + A    HLL
Sbjct: 535 LGRLLYPTFKNYRLNTLCKKFNIELVAHHRAIYDAEATGHLL 576


>gi|325911796|ref|ZP_08174200.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 143-D]
 gi|325476302|gb|EGC79464.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 143-D]
          Length = 1416

 Score = 98.2 bits (243), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + L  ITDE 
Sbjct: 400 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 457

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +    ++DTL +
Sbjct: 458 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 514

Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +R  HP  +R+ L+SL K+Y + +   HR+   A    +L+  +         + N G  
Sbjct: 515 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 574

Query: 187 TNEDRFFKEEKKTVPN 202
            +  +F +  K+  PN
Sbjct: 575 NDYAKFGQVYKRAKPN 590


>gi|256003329|ref|ZP_05428320.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
           2360]
 gi|281417714|ref|ZP_06248734.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|255992619|gb|EEU02710.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
           2360]
 gi|281409116|gb|EFB39374.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|316940249|gb|ADU74283.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
           1313]
          Length = 1442

 Score = 98.2 bits (243), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 97/168 (57%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           +VFDIETTGL +  D+I EIGAV++ +  K   TF  F+ P      PE  +KL GITD+
Sbjct: 430 VVFDIETTGLSADKDKITEIGAVKIKE-GKIVDTFSTFVNP--EIPIPEFVVKLTGITDD 486

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +  EF +F     +  +AHNA FD GFI    + IN++  +P  +IDTL 
Sbjct: 487 MVSDAPTIDKVLPEFLEFVG--TSPLVAHNAVFDTGFIRHNARLINRNVDNP--VIDTLE 542

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R+  P   ++ L+ + K  G+++ +   H AL D+    +++IK +
Sbjct: 543 LSRQMFPELKKHKLDVVAKHLGVSLENH--HRALDDAKACGEIFIKCL 588


>gi|125973511|ref|YP_001037421.1| DNA polymerase III PolC [Clostridium thermocellum ATCC 27405]
 gi|125713736|gb|ABN52228.1| DNA polymerase III catalytic subunit, PolC type [Clostridium
           thermocellum ATCC 27405]
          Length = 1442

 Score = 98.2 bits (243), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 97/168 (57%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           +VFDIETTGL +  D+I EIGAV++ +  K   TF  F+ P      PE  +KL GITD+
Sbjct: 430 VVFDIETTGLSADKDKITEIGAVKIKE-GKIVDTFSTFVNP--EIPIPEFVVKLTGITDD 486

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +  EF +F     +  +AHNA FD GFI    + IN++  +P  +IDTL 
Sbjct: 487 MVSDAPTIDKVLPEFLEFVG--TSPLVAHNAVFDTGFIRHNARLINRNVDNP--VIDTLE 542

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R+  P   ++ L+ + K  G+++ +   H AL D+    +++IK +
Sbjct: 543 LSRQMFPELKKHKLDVVAKHLGVSLENH--HRALDDAKACGEIFIKCL 588


>gi|295399848|ref|ZP_06809829.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111640|ref|YP_003989956.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|294978251|gb|EFG53848.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216741|gb|ADP75345.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1]
          Length = 1436

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 97/167 (58%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + IIE+ AV++ D    +R F  F  P+    S   ++L GITD+ 
Sbjct: 422 VVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FTSFANPH-HPLSMTTIELTGITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LKD P    +  +F+D+    ++  +AHNA FD+GF+N    +I    +  + +IDTL +
Sbjct: 480 LKDAPDVEEVLRQFYDWIG--DSVLVAHNASFDIGFLNVGFAKIGLGKVT-NPVIDTLEL 536

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR  +P  +N  LN+LCK++ I ++    H A+ D+     + ++M+
Sbjct: 537 ARFLYPDLKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLLMRML 581


>gi|196247598|ref|ZP_03146300.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
 gi|196212382|gb|EDY07139.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
          Length = 1434

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 95/162 (58%), Gaps = 10/162 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + IIE+ AV++ D    +R F  F  P+    S   ++L GITDE 
Sbjct: 420 VVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANPH-HPLSVTTMELTGITDEM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +KD P    +   F D+    ++   AHNA FD+GF+NA L ++     ++P  +IDTL 
Sbjct: 478 VKDAPDVEEVLRRFIDWVG--DSTLAAHNASFDIGFLNAGLAKMGLGKVINP--VIDTLE 533

Query: 129 IARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLL 167
           +AR  +P  +N  LN+LCK++ I ++  HR+ + A    HLL
Sbjct: 534 LARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLL 575


>gi|138894778|ref|YP_001125231.1| DNA polymerase III PolC [Geobacillus thermodenitrificans NG80-2]
 gi|134266291|gb|ABO66486.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans
           NG80-2]
          Length = 1442

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 95/162 (58%), Gaps = 10/162 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + IIE+ AV++ D    +R F  F  P+    S   ++L GITDE 
Sbjct: 428 VVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANPH-HPLSVTTMELTGITDEM 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +KD P    +   F D+    ++   AHNA FD+GF+NA L ++     ++P  +IDTL 
Sbjct: 486 VKDAPDVEEVLRRFIDWVG--DSTLAAHNASFDIGFLNAGLAKMGLGKVINP--VIDTLE 541

Query: 129 IARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLL 167
           +AR  +P  +N  LN+LCK++ I ++  HR+ + A    HLL
Sbjct: 542 LARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLL 583


>gi|116093619|gb|ABJ58772.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1411

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+    S   + L  ITDE 
Sbjct: 393 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTINLTSITDEM 450

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++     + +  +F DF+   N     HN +FDVGF++A L+R    P     ++DTL +
Sbjct: 451 VQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQPVVDTLEV 507

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  SR+ L+SLC++Y + + H  +
Sbjct: 508 SRLLHPEQSRHTLDSLCRKYNVALEHHHR 536


>gi|315111548|ref|YP_813210.2| DNA polymerase III, alpha subunit ( type) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1445

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+    S   + L  ITDE 
Sbjct: 427 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTINLTSITDEM 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++     + +  +F DF+   N     HN +FDVGF++A L+R    P     ++DTL +
Sbjct: 485 VQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQPVVDTLEV 541

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  SR+ L+SLC++Y + + H  +
Sbjct: 542 SRLLHPEQSRHTLDSLCRKYNVALEHHHR 570


>gi|325126001|gb|ADY85331.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 1445

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+    S   + L  ITDE 
Sbjct: 427 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTINLTSITDEM 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++     + +  +F DF+   N     HN +FDVGF++A L+R    P     ++DTL +
Sbjct: 485 VQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQPVVDTLEV 541

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  SR+ L+SLC++Y + + H  +
Sbjct: 542 SRLLHPEQSRHTLDSLCRKYNVPLEHHHR 570


>gi|104774216|ref|YP_619196.1| DNA polymerase III, alpha subunit ( type) (PolC) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423297|emb|CAI98138.1| DNA polymerase III, alpha subunit (gram-positive type) (PolC)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 1411

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+    S   + L  ITDE 
Sbjct: 393 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTINLTSITDEM 450

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++     + +  +F DF+   N     HN +FDVGF++A L+R    P     ++DTL +
Sbjct: 451 VQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQPVVDTLEV 507

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  SR+ L+SLC++Y + + H  +
Sbjct: 508 SRLLHPEQSRHTLDSLCRKYNVPLEHHHR 536


>gi|228475024|ref|ZP_04059752.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis SK119]
 gi|228271009|gb|EEK12397.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis SK119]
          Length = 1438

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  PN  K S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDQIIELAAVKVKDGEIIDK-FERFSNPN-EKLSETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582


>gi|218288332|ref|ZP_03492631.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241691|gb|EED08864.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 1440

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 96/167 (57%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD ETTGL+++ D +IEI AV+ +   +   T+   + P  R   P+ ++L GIT+E 
Sbjct: 428 VVFDTETTGLNAREDTLIEIAAVK-VKAGQIVDTYATLIDPE-RALDPKIVELTGITNEM 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +P        F  F   + A  +AHNA+FDVGF+N   +R+  DP +   +IDTL++
Sbjct: 486 VAGQPKLKEALDGFRQF--ARGAVLVAHNAEFDVGFLNQCAERLGLDPWEEP-VIDTLAL 542

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR  +P  +N  L +L +++ + + +   H AL DS   + V++ M+
Sbjct: 543 ARVLYPGEKNYKLKTLTQKFSVDLVNH--HRALADSEATAKVFVHML 587


>gi|258511408|ref|YP_003184842.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478134|gb|ACV58453.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 1440

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 96/167 (57%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD ETTGL+++ D +IEI AV+ +   +   T+   + P  R   P+ ++L GIT+E 
Sbjct: 428 VVFDTETTGLNAREDTLIEIAAVK-VKAGQIVDTYATLIDPE-RSLDPKIVELTGITNEM 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +P        F  F   + A  +AHNA+FDVGF+N   +R+  DP +   +IDTL++
Sbjct: 486 VAGQPKLREALDGFRQF--ARGAVLVAHNAEFDVGFLNQCAERLGLDPWEQP-VIDTLAL 542

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR  +P  +N  L +L +++ + + +   H AL DS   + V++ M+
Sbjct: 543 ARVLYPGEKNYKLKTLTQKFSVDLVNH--HRALADSEATAKVFVHML 587


>gi|239826652|ref|YP_002949276.1| DNA polymerase III PolC [Geobacillus sp. WCH70]
 gi|239806945|gb|ACS24010.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70]
          Length = 1435

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 8/161 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + IIE+ AV++ D    +R F  F  P+    S   ++L GITD+ 
Sbjct: 421 VVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FTSFANPH-HPLSITTIELTGITDDM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LKD P    +  +F+D+    ++  +AHNA FD+GF+N    ++    +  + +IDTL +
Sbjct: 479 LKDAPDVEEVLRQFYDWMG--DSILVAHNASFDIGFLNVGFTKLGLGKVT-NPVIDTLEL 535

Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLL 167
           AR  +P  +N  LN+LCK++ I ++  HR+ + A    +LL
Sbjct: 536 ARFLYPELKNHRLNTLCKKFDIELTQHHRAIYDAEATGYLL 576


>gi|194015013|ref|ZP_03053630.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           pumilus ATCC 7061]
 gi|194014039|gb|EDW23604.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           pumilus ATCC 7061]
          Length = 1437

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 99/177 (55%), Gaps = 7/177 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++      +R F+ F  P+    S   ++L GITD+ 
Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKIKGGEIIDR-FEAFANPH-HPLSATTIELTGITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P    +  +F ++  +     +AHNA FD+GF+N   +R+ K     + +IDTL +
Sbjct: 480 VKDAPDVVDVVRDFKEWIGQDI--LVAHNASFDMGFLNTAYKRLLKTDKASNPVIDTLEL 537

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            R  +P  +N  LN+LCK++ I ++    H A+ D+     + +KM+   ++ +  +
Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLMLKMLKDAAEKDIAY 592


>gi|42527504|ref|NP_972602.1| DNA polymerase III domain-containing protein [Treponema denticola
           ATCC 35405]
 gi|41818089|gb|AAS12513.1| DNA polymerase III domain protein [Treponema denticola ATCC 35405]
 gi|325473756|gb|EGC76945.1| DNA polymerase III domain-containing protein [Treponema denticola
           F0402]
          Length = 217

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 8/153 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG ++K +R++EIG V+  D       + V + P  +   PEA K++ ITDE L
Sbjct: 18  AFDTETTGTEAKAERVVEIGCVKF-DIRGVIARYNVLIDPE-KPMPPEAGKVNQITDEML 75

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +P F+ +  +F DF   +N   +AHNA FD+ FIN EL+R  K  L  +++ DTL+ A
Sbjct: 76  AGQPKFAEVLPDFLDFI--RNTVLVAHNASFDINFINCELERCGKTKL-TNKVFDTLTFA 132

Query: 131 RRKHPSSRN-DLNSLCKRYGITI--SHRSKHGA 160
           R   P  ++  L +L  ++G+    +HR++  A
Sbjct: 133 RETLPGLQSYALQNLATQFGVQAVNAHRAEDDA 165


>gi|242373555|ref|ZP_04819129.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
 gi|242348918|gb|EES40520.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
          Length = 1442

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 427 VVFDVETTGLSNQYDKIIELAAVKVHDGEIIDK-FERFSNPHERL-SETIINLTHITDDM 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 485 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 541

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 586


>gi|15614981|ref|NP_243284.1| DNA polymerase III PolC [Bacillus halodurans C-125]
 gi|13959348|sp|Q9KA72|DPO3_BACHD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|10175038|dbj|BAB06137.1| DNA polymerase III (alpha subunit) [Bacillus halodurans C-125]
          Length = 1433

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 97/165 (58%), Gaps = 16/165 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  ++IIE+ AV++ +    +R F+ F  P+    +   ++L GITD+ 
Sbjct: 420 VVFDVETTGLSAVYNKIIELAAVKVKNGEIIDR-FERFADPH-EPLTNTIIELTGITDDM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           LK +P    + +EF  F    +A  +AHNA FD+GF+N   Q++     K+P     +ID
Sbjct: 478 LKGQPEVEQVLNEFHAFIG--DAVLVAHNASFDMGFLNTGFQKMGLGEAKNP-----VID 530

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITI--SHRSKHGALLDSHLL 167
           TL + R  +P+ +N  LN+LCK++ I +   HR+ + A    HLL
Sbjct: 531 TLELGRFLYPTLKNHRLNTLCKKFDIELVSHHRAIYDAEATGHLL 575


>gi|172057851|ref|YP_001814311.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
           255-15]
 gi|171990372|gb|ACB61294.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
           255-15]
          Length = 1431

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 101/180 (56%), Gaps = 9/180 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  ++IIE+ AV++ D    ++ F+ F  P     S   + L GITDE 
Sbjct: 415 VVFDVETTGLSAMYNKIIELAAVKIYDGDVIDK-FEAFADPK-HLLSATTIDLTGITDEM 472

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++ KP    +  EF D+     +  +AHNA FD+GF+NA L+  N +      +IDTL +
Sbjct: 473 VRGKPDPEQVVKEFMDWAG--GSILVAHNASFDIGFLNATLRSGNHEE-STLPVIDTLEL 529

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           AR   PS +N  LN+L KR+ I ++    H A+ D+     + +K++    ++ F  KT+
Sbjct: 530 ARVLMPSLKNHRLNTLAKRFDIELTQH--HRAIYDAEATGYLMLKLLQMADEM-FNMKTH 586


>gi|167470221|ref|ZP_02334925.1| DNA polymerase III, epsilon subunit [Yersinia pestis FV-1]
          Length = 143

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 70/114 (61%), Gaps = 8/114 (7%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+I+ D ETTG++      +  RIIEIG V +++   T R F V++ P  R   PEA  +
Sbjct: 7   RQILLDTETTGMNKLGVHYEGHRIIEIGTVAVINLPLTGRNFHVYVKP-ARLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           HGI+DEFL DKP+F+ I  EF DF   +  E + HNA FD+GF + E + + +D
Sbjct: 66  HGISDEFLADKPTFADITPEFLDFI--RGGELVIHNAAFDIGFKDYEFRMLQQD 117


>gi|164688523|ref|ZP_02212551.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM
           16795]
 gi|164602936|gb|EDQ96401.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM
           16795]
          Length = 1432

 Score = 95.5 bits (236), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 101/167 (60%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG  +KND+I EIGAV++ ++   +R F   + P  +  S +  +L GIT++ 
Sbjct: 419 VVFDLETTGFSNKNDKITEIGAVKVKNFEIVDR-FNELINPE-KDISYKVQELTGITNDL 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KDKP+   I  +F +F    ++  +AHNA+FD+GFIN + + +N +  + S  +DTL +
Sbjct: 477 IKDKPTIEEILPKFMEFVG--DSVLVAHNAEFDIGFINQKCKEMNIEFKNKS--VDTLML 532

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P   R  LN+L K  G+ + +   H A+ D+   + ++IK +
Sbjct: 533 ARILLPHLKRFKLNNLTKELGVPLHNH--HRAVDDAAATAQIFIKFL 577


>gi|228998594|ref|ZP_04158181.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
 gi|228761062|gb|EEM10021.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
          Length = 1433

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128
           L D P    +F +F  +  +     +AHNA FD+GF+N   ++   D P +P  +IDTL 
Sbjct: 477 LTDAPEVGEVFKKFESWMGDHT--LVAHNASFDMGFLNVGFKKCGLDKPKNP--VIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|228992546|ref|ZP_04152473.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
 gi|228767180|gb|EEM15816.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
          Length = 1433

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128
           L D P    +F +F  +  +     +AHNA FD+GF+N   ++   D P +P  +IDTL 
Sbjct: 477 LTDAPEVGEVFKKFESWMGDHT--LVAHNASFDMGFLNVGFKKCGLDKPKNP--VIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|229006094|ref|ZP_04163782.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
 gi|228755170|gb|EEM04527.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
          Length = 1433

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128
           L D P    +F +F  +  +     +AHNA FD+GF+N   ++   D P +P  +IDTL 
Sbjct: 477 LTDAPEVGEVFKKFESWMGDHT--LVAHNASFDMGFLNVGFKKCGLDKPKNP--VIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|311030091|ref|ZP_07708181.1| DNA polymerase III PolC [Bacillus sp. m3-13]
          Length = 1437

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 96/171 (56%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++      +R F+ F  P+    S   + L GITD+ 
Sbjct: 423 VVFDVETTGLSAMYDTIIELAAVKVKGGEIIDR-FESFANPH-HPLSATTINLTGITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           +++ P    +  +F ++   Q+   +AHNA FD+GF+N   QRI     K+P     +ID
Sbjct: 481 VQNAPEVGDVLKQFSEWM--QDDILVAHNASFDMGFLNIGFQRIGLGKAKNP-----VID 533

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL + R   PS +N  LN+LCK++ I ++    H A+ D+     + +KM+
Sbjct: 534 TLELGRLLFPSLKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLLVKML 582


>gi|308173621|ref|YP_003920326.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7]
 gi|307606485|emb|CBI42856.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM
           7]
 gi|328553447|gb|AEB23939.1| DNA polymerase III PolC [Bacillus amyloliquefaciens TA208]
 gi|328911762|gb|AEB63358.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3]
          Length = 1437

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 96/167 (57%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+    S   ++L GITD+ 
Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKIRGGEIIDK-FEAFANPH-HPLSATTIELTGITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D P    +  +F ++  +     +AHNA FD+GF+N   +R+ K     + +IDTL +
Sbjct: 480 VRDAPDVVDVVRDFKEWIGDDV--LVAHNASFDMGFLNVAYKRLLKTEKAKNPVIDTLEL 537

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR  +P  +N  LN+LCK++ I ++    H A+ D+     + +KM+
Sbjct: 538 ARFLYPEFKNHRLNTLCKKFDIELTQH--HRAVFDAEATGYLLLKML 582


>gi|229086370|ref|ZP_04218547.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
 gi|228696982|gb|EEL49790.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
          Length = 1433

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128
           L D P    +F +F  +  +     +AHNA FD+GF+N   ++   D P +P  +IDTL 
Sbjct: 477 LTDAPEVGEVFKKFEAWMGDHT--LVAHNASFDMGFLNVGFKKCGLDKPKNP--VIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|154686075|ref|YP_001421236.1| DNA polymerase III PolC [Bacillus amyloliquefaciens FZB42]
 gi|154351926|gb|ABS74005.1| PolC [Bacillus amyloliquefaciens FZB42]
          Length = 1437

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 96/167 (57%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+    S   ++L GITD+ 
Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKIRGGEIIDK-FEAFANPH-HPLSATTIELTGITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D P    +  +F ++  +     +AHNA FD+GF+N   +R+ K     + +IDTL +
Sbjct: 480 VRDAPDVVDVVRDFKEWIGDDV--LVAHNASFDMGFLNVAYKRLLKTEKAKNPVIDTLEL 537

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR  +P  +N  LN+LCK++ I ++    H A+ D+     + +KM+
Sbjct: 538 ARFLYPEFKNHRLNTLCKKFDIELTQH--HRAVFDAEATGYLLLKML 582


>gi|323705405|ref|ZP_08116980.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535307|gb|EGB25083.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 1410

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 101/165 (61%), Gaps = 9/165 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL S ND IIEIGAV++ ++   + TF+ F+ P     S    KL GITD+ 
Sbjct: 400 VVFDIETTGLSSINDNIIEIGAVKIKNFQIVD-TFETFVNPQVHI-SKFITKLTGITDDM 457

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+ PS   I  +F DF   +++  +AHNA FDV FI  + + +  +  +P  ++DTL +
Sbjct: 458 VKEYPSIEEILPKFLDFI--KDSILVAHNANFDVTFIKTKARNLGMEVDNP--VLDTLEL 513

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +R  + + +N  L+++ +  G+++ +   H A+ D+   ++++IK
Sbjct: 514 SRHMYENLKNYKLDTVAQHLGVSLENH--HRAVDDAKATAEIFIK 556


>gi|110004377|emb|CAK98715.1| probable dna polymerase III alpha subunit protein [Spiroplasma
           citri]
          Length = 1453

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 99/180 (55%), Gaps = 8/180 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++FD+ETTGL S  D IIE GAV ++D     R     L     K S    +L GITD
Sbjct: 409 KYVIFDLETTGLSSGYDEIIEFGAV-IMDGISGERQIINHLFKPSVKLSSFTTELTGITD 467

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L DKP+F     +  ++F  ++A  IAHNA+FD+GFI + L++  +  ++ + +IDTL
Sbjct: 468 ELLADKPTFIESIDQILEYF--KDAILIAHNAEFDLGFIQSWLKKAGRSEIN-NTVIDTL 524

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY---IKMMVGGSQINF 183
            ++R   P  +N  L ++ + Y +  +    H    D+ +L+D+Y   ++ M+    I F
Sbjct: 525 QLSRILEPHLKNYRLGTIARCYSVIYNEEVAHRGDYDAIVLTDIYEHQLRKMINNYGIEF 584


>gi|205373423|ref|ZP_03226227.1| DNA polymerase III PolC [Bacillus coahuilensis m4-4]
          Length = 1436

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 96/170 (56%), Gaps = 14/170 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGL +  D IIE+ AV++ D    +R F+ F  P+    S   + L GITD+ 
Sbjct: 422 IVFDVETTGLSANYDTIIELAAVKVFDGEIIDR-FERFANPH-HPLSATTINLTGITDDM 479

Query: 70  LKDKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDT 126
           +KD P  S + ++F  W     ++   +AHNA FD+GF+N   QR   K   +P  +IDT
Sbjct: 480 VKDAPEVSEVVTDFKKW----AEDGILVAHNASFDMGFLNISYQRAGLKKASNP--VIDT 533

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L +AR  +PS +N  LN+L K+  + ++    H A+ D+     +  K++
Sbjct: 534 LELARFLYPSMKNHRLNTLAKKLDVELTQH--HRAIYDAEATGYILAKLL 581


>gi|70726651|ref|YP_253565.1| DNA polymerase III PolC [Staphylococcus haemolyticus JCSC1435]
 gi|123660050|sp|Q4L5W6|DPO3_STAHJ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|68447375|dbj|BAE04959.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
           haemolyticus JCSC1435]
          Length = 1438

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  P+  K S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDQIIELAAVKVKDGEIIDK-FERFSNPH-EKLSETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTESTAYIFIKMV 582


>gi|314936575|ref|ZP_07843922.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655194|gb|EFS18939.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis subsp. hominis C80]
          Length = 1438

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  P+  K S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDQIIELAAVKVKDGEIIDK-FERFSNPH-EKLSETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582


>gi|251797402|ref|YP_003012133.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2]
 gi|247545028|gb|ACT02047.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2]
          Length = 1437

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 96/168 (57%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFDIETTGL   N++IIE+  V++ +  + +R F  F+ P+  K      +L  I DE 
Sbjct: 422 IVFDIETTGLSIINNKIIELAGVKMREGKEVDR-FSTFINPH-EKIPYHIQQLTNINDEM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +KD P       EF DF    ++  +AHNA+FD+GFI A L+ I   D  +P  ++DTL 
Sbjct: 480 VKDAPELEPKLREFIDFIG--DSILVAHNARFDIGFIQANLKSIGMPDVTNP--VLDTLE 535

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR  HP+ +N  LN+L  +Y +++ +   H A+ DS  L  V   ++
Sbjct: 536 LARFLHPTMKNHRLNTLSAKYKVSLDNH--HRAVDDSVALGGVLFGLI 581


>gi|157692337|ref|YP_001486799.1| DNA polymerase III PolC [Bacillus pumilus SAFR-032]
 gi|157681095|gb|ABV62239.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus
           SAFR-032]
          Length = 1437

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 99/177 (55%), Gaps = 7/177 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++      +R F+ F  P+    S   ++L GITD+ 
Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKIKGGEIIDR-FEAFANPH-HPLSATTIELTGITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D P    +  +F ++  +     +AHNA FD+GF+N   +R+ K     + +IDTL +
Sbjct: 480 VRDAPDVVDVVRDFKEWIGQDI--LVAHNASFDMGFLNTAYKRLLKTDKASNPVIDTLEL 537

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            R  +P  +N  LN+LCK++ I ++    H A+ D+     + +KM+   ++ +  +
Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLMLKMLKDAAEKDIAY 592


>gi|308068695|ref|YP_003870300.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
 gi|305857974|gb|ADM69762.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
          Length = 1438

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 10/174 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTGL    ++IIEI AV++ D  + +R +  F+ P+ R   P  + +L  I DE
Sbjct: 422 VVFDIETTGLSVTQNKIIEIAAVKMHDGKEVDR-YATFVNPHER--IPYNIQQLTNINDE 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  EF  F    +A  +AHNA+FDVGFI A L+ +   P   + ++DTL 
Sbjct: 479 MVKDAPDVEPVMKEFVAFAG--DAVLVAHNARFDVGFIQATLRNMGL-PEMTNPVLDTLE 535

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +AR   P+ +N  LN+L  +Y + +   S H A+ D+  L++V   ++    QI
Sbjct: 536 LARLLFPTMKNHRLNTLTTKYKVAL--ESHHRAIDDTVALTEVLNGLLNDAEQI 587


>gi|313888341|ref|ZP_07822012.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845744|gb|EFR33134.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 1012

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 100/168 (59%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           +VFDIETTGL S+ND+I EIGAV++ +    +R  Q+    N  K  P+  + L GI++ 
Sbjct: 1   MVFDIETTGLSSRNDKITEIGAVKIKNGMIVDRFSQLI---NPEKEIPQVVVDLTGISNA 57

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++++P+   +  +F+DF   ++A  +AHNAKFD+ FI  E    N + +    I+DTL 
Sbjct: 58  MVENEPTIEEVILKFYDF--AKDAVLVAHNAKFDISFIRREYA--NNNLVFNHPILDTLV 113

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR       R +L +LCK  G+++     H A+ D+   ++V+IK++
Sbjct: 114 LARATMSDMKRFNLGTLCKNLGVSLV--GAHRAVNDAEATAEVFIKLI 159


>gi|323464622|gb|ADX76775.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus pseudintermedius ED99]
          Length = 1435

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 102/169 (60%), Gaps = 10/169 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ +    E +K L  ITD+
Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVKNGEIIDK-FERFSNPHEKLT--ETIKNLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD P    + +EF  +    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 478 MLKDAPEIEEVLTEFKAWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-SANAVIDTLE 534

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++R  + S  ++ LN L K+YG+ ++    H A+ D+   + +++KM+ 
Sbjct: 535 LSRTINTSYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFVKMLA 581


>gi|152976184|ref|YP_001375701.1| DNA polymerase III PolC [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152024936|gb|ABS22706.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 1433

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 94/168 (55%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128
           L D P    +F +F  +  +     +AHNA FD+GF+N   ++   D P +P  +IDTL 
Sbjct: 477 LTDAPEVGEVFKKFQAWMGDHT--LVAHNASFDMGFLNVGFKKCGLDKPKNP--VIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   P  +N  LN+LCK+  I ++    H A+ D+     +  KM+
Sbjct: 533 LARFLFPDMKNHRLNTLCKKLDIELTQH--HRAIYDTEATGYLLAKML 578


>gi|229061421|ref|ZP_04198766.1| DNA polymerase III polC-type [Bacillus cereus AH603]
 gi|228717844|gb|EEL69492.1| DNA polymerase III polC-type [Bacillus cereus AH603]
          Length = 1433

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 96/171 (56%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           L D P    +F +F ++  +     +AHNA FD+GFIN   +++     K+P     +ID
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKVGIEKTKNP-----VID 529

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 530 TLELARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|312978245|ref|ZP_07789989.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus
           crispatus CTV-05]
 gi|310894963|gb|EFQ44033.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus
           crispatus CTV-05]
          Length = 836

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 8/150 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S + + L  ITDE 
Sbjct: 420 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH-HPLSEQTINLTSITDEM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +      + +  +F DF+ ++      HN +FDVGF+NA L+R   K+   P  ++DTL 
Sbjct: 478 VGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEITQP--VVDTLE 533

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           ++R  HP  SR+ L+SL K+Y +++ H  +
Sbjct: 534 VSRLLHPEQSRHTLDSLAKKYNVSLEHHHR 563


>gi|293402030|ref|ZP_06646169.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304422|gb|EFE45672.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 1443

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 15/170 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-----KLHGI 65
           VFD+ETTGL S+ D IIE G  +++      ++ Q+F+ P      P AL     +L  I
Sbjct: 398 VFDLETTGLSSRFDHIIEFGG-QIMKDRTCIKSLQLFVKP------PIALSAFTTELTNI 450

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++E +K+   F+    E  +F    ++  +AHNA FD GF+NAEL+RI + PL  + +ID
Sbjct: 451 SEENMKNAKPFAECVDEILEFIG--DSILVAHNASFDYGFLNAELERIGRKPL-MNPVID 507

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR         L +L ++YGI       H A  D+ +L+ V++ M+
Sbjct: 508 TLDLARSMMDRKGYRLGNLARQYGIRYDEDVAHRADYDAEVLAQVFMHML 557


>gi|324327715|gb|ADY22975.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 970

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      K+P     +ID
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+
Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|196044660|ref|ZP_03111895.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225865799|ref|YP_002751177.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|229186057|ref|ZP_04313227.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
 gi|196024695|gb|EDX63367.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225786021|gb|ACO26238.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|228597476|gb|EEK55126.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
          Length = 970

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      K+P     +ID
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+
Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|319892281|ref|YP_004149156.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161977|gb|ADV05520.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 1435

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 102/169 (60%), Gaps = 10/169 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ +    E +K L  ITD+
Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVKNGEIIDK-FERFSNPHEKLT--ETIKNLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD P    + +EF  +    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 478 MLKDAPEIEEVLTEFKAWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNAVIDTLE 534

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++R  + S  ++ LN L K+YG+ ++    H A+ D+   + +++KM+ 
Sbjct: 535 LSRTINTSYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFVKMLA 581


>gi|160947401|ref|ZP_02094568.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
 gi|158446535|gb|EDP23530.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
          Length = 1431

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 96/167 (57%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL    + I EIGAV + +  K    F   + P  ++ S E  ++ GIT+E 
Sbjct: 418 VVFDIETTGLSHLKNNITEIGAVRV-ESGKIVDVFNGLVNPE-QEISQEITEITGITNEM 475

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + DKP  S I  +F +F   +NA ++AHNA+FD+ FI    +R+N +  +P+  IDT+  
Sbjct: 476 VADKPLISEIMPKFLEF--SKNAVFVAHNAEFDISFIKTNCKRLNLE-FNPT-FIDTMGF 531

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +N  LN+LCK  G+ + +   H A  D+   + + ++++
Sbjct: 532 ARAILPHLKNHKLNTLCKELGVNLLNH--HRASFDAEACAGILLELI 576


>gi|256849838|ref|ZP_05555269.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|256713327|gb|EEU28317.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
          Length = 1436

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 8/150 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S + + L  ITDE 
Sbjct: 420 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH-HPLSEQTINLTSITDEM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +      + +  +F DF+ ++      HN +FDVGF+NA L+R   K+   P  ++DTL 
Sbjct: 478 VGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEITQP--VVDTLE 533

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           ++R  HP  SR+ L+SL K+Y +++ H  +
Sbjct: 534 VSRLLHPEQSRHTLDSLAKKYNVSLEHHHR 563


>gi|223044235|ref|ZP_03614272.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus capitis SK14]
 gi|222442385|gb|EEE48493.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus capitis SK14]
          Length = 1438

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMI 582


>gi|314933443|ref|ZP_07840808.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus caprae C87]
 gi|313653593|gb|EFS17350.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus caprae C87]
          Length = 1442

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 427 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 485 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 541

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMI 586


>gi|227878821|ref|ZP_03996728.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|227861569|gb|EEJ69181.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
          Length = 1436

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 8/150 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S + + L  ITDE 
Sbjct: 420 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH-HPLSEQTINLTSITDEM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +      + +  +F DF+ ++      HN +FDVGF+NA L+R   K+   P  ++DTL 
Sbjct: 478 VGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEITQP--VVDTLE 533

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           ++R  HP  SR+ L+SL K+Y +++ H  +
Sbjct: 534 VSRLLHPEQSRHTLDSLAKKYNVSLEHHHR 563


>gi|329724322|gb|EGG60834.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU144]
          Length = 1438

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582


>gi|256843343|ref|ZP_05548831.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|293381212|ref|ZP_06627220.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus crispatus 214-1]
 gi|256614763|gb|EEU19964.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|290922252|gb|EFD99246.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus crispatus 214-1]
          Length = 1436

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 8/150 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S + + L  ITDE 
Sbjct: 420 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH-HPLSEQTINLTSITDEM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +      + +  +F DF+ ++      HN +FDVGF+NA L+R   K+   P  ++DTL 
Sbjct: 478 VGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEITQP--VVDTLE 533

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           ++R  HP  SR+ L+SL K+Y +++ H  +
Sbjct: 534 VSRLLHPEQSRHTLDSLAKKYNVSLEHHHR 563


>gi|295693139|ref|YP_003601749.1| DNA polymerase iii, alpha subunit [Lactobacillus crispatus ST1]
 gi|295031245|emb|CBL50724.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus ST1]
          Length = 1436

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 8/150 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S + + L  ITDE 
Sbjct: 420 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH-HPLSEQTINLTSITDEM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +      + +  +F DF+ ++      HN +FDVGF+NA L+R   K+   P  ++DTL 
Sbjct: 478 VGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEITQP--VVDTLE 533

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           ++R  HP  SR+ L+SL K+Y +++ H  +
Sbjct: 534 VSRLLHPEQSRHTLDSLAKKYNVSLEHHHR 563


>gi|262046916|ref|ZP_06019876.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
 gi|260572898|gb|EEX29458.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
          Length = 1436

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 8/150 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S + + L  ITDE 
Sbjct: 420 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH-HPLSEQTINLTSITDEM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +      + +  +F DF+ ++      HN +FDVGF+NA L+R   K+   P  ++DTL 
Sbjct: 478 VGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEITQP--VVDTLE 533

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           ++R  HP  SR+ L+SL K+Y +++ H  +
Sbjct: 534 VSRLLHPEQSRHTLDSLAKKYNVSLEHHHR 563


>gi|154502558|ref|ZP_02039618.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149]
 gi|153796750|gb|EDN79170.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149]
          Length = 1503

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 95/169 (56%), Gaps = 13/169 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFDIETTG  +  D+IIEIGAV++ D +   + F  F+ P  R    E  +L  ITDE 
Sbjct: 468 IVFDIETTGFSAIKDKIIEIGAVKVKDGAIVEK-FSTFVNPK-RPIPFEITQLTSITDEM 525

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127
           + D P   S+  EF +F    +   +AHNA FDVGFI  N   Q I  D +     +DT+
Sbjct: 526 VLDAPDIESVLPEFLEFVG--DGVLVAHNAGFDVGFIEQNCRYQEIEPDFVS----VDTV 579

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++AR   P+ S+  LN + K  GI++ +   H A+ D+   +++++K +
Sbjct: 580 ALARVLLPTLSKYKLNIVAKALGISLENH--HRAVDDAGATAEIFVKFV 626


>gi|251810695|ref|ZP_04825168.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805855|gb|EES58512.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
          Length = 1442

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 427 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 485 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 541

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 586


>gi|242242547|ref|ZP_04796992.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
 gi|242233974|gb|EES36286.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
          Length = 1442

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 427 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 485 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 541

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 586


>gi|73919252|sp|Q5HPS7|DPO3_STAEQ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|329736245|gb|EGG72517.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU028]
 gi|329736547|gb|EGG72813.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU045]
          Length = 1438

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582


>gi|319401446|gb|EFV89656.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis FRI909]
          Length = 1438

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582


>gi|299534745|ref|ZP_07048075.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
 gi|298729833|gb|EFI70378.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
          Length = 1443

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 98/168 (58%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++ D    ++ ++ F  P+    S   ++L GITD+ 
Sbjct: 429 VVFDVETTGLSTAYDTIIELAAVKIKDGQVIDK-YESFANPH-HPLSATTIELTGITDDM 486

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +++ P    +  EF  F    +A  +AHNA FD+GF+    ++   +D + P  +IDTL 
Sbjct: 487 VRNAPEVEQVIKEFHAFIG--DAIVVAHNASFDIGFLYTGYKKFGLEDTVHP--VIDTLE 542

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR  +P+ +N  LN+LCK++ I ++    H A+ D+     + ++++
Sbjct: 543 LARLLYPTMKNHRLNTLCKKFNIELTQH--HRAIYDTEATGYLLLQLL 588


>gi|57866746|ref|YP_188413.1| DNA polymerase III PolC [Staphylococcus epidermidis RP62A]
 gi|293366772|ref|ZP_06613448.1| DNA polymerase III PolC [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|57637404|gb|AAW54192.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis RP62A]
 gi|291319073|gb|EFE59443.1| DNA polymerase III PolC [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 1436

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 479 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580


>gi|27467858|ref|NP_764495.1| DNA polymerase III PolC [Staphylococcus epidermidis ATCC 12228]
 gi|32469713|sp|Q8CPG6|DPO3_STAES RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|27315403|gb|AAO04537.1|AE016747_34 DNA polymerase III, alpha chain PolC-type [Staphylococcus
           epidermidis ATCC 12228]
          Length = 1442

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 427 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 485 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 541

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 586


>gi|282876304|ref|ZP_06285171.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis SK135]
 gi|281295329|gb|EFA87856.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis SK135]
          Length = 1438

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582


>gi|222097262|ref|YP_002531319.1| DNA polymerase iii polc [Bacillus cereus Q1]
 gi|221241320|gb|ACM14030.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
          Length = 1433

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      K+P     +ID
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+
Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|217961238|ref|YP_002339806.1| DNA polymerase III PolC [Bacillus cereus AH187]
 gi|229140459|ref|ZP_04269014.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
 gi|229197928|ref|ZP_04324644.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|217065194|gb|ACJ79444.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH187]
 gi|228585646|gb|EEK43748.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|228643020|gb|EEK99296.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
          Length = 1433

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      K+P     +ID
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+
Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|49478392|ref|YP_037879.1| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49329948|gb|AAT60594.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 1433

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      K+P     +ID
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+
Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|196036920|ref|ZP_03104304.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus W]
 gi|228928866|ref|ZP_04091898.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|195990475|gb|EDX54459.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus W]
 gi|228830673|gb|EEM76278.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 1433

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      K+P     +ID
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+
Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|30263821|ref|NP_846198.1| DNA polymerase III PolC [Bacillus anthracis str. Ames]
 gi|47529245|ref|YP_020594.1| DNA polymerase III PolC [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186668|ref|YP_029920.1| DNA polymerase III PolC [Bacillus anthracis str. Sterne]
 gi|52141670|ref|YP_085159.1| DNA polymerase III PolC [Bacillus cereus E33L]
 gi|65321145|ref|ZP_00394104.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bacillus anthracis str. A2012]
 gi|165872624|ref|ZP_02217255.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0488]
 gi|170687849|ref|ZP_02879063.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0465]
 gi|170706900|ref|ZP_02897358.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0389]
 gi|190568456|ref|ZP_03021363.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis Tsiankovskii-I]
 gi|196042171|ref|ZP_03109454.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus NVH0597-99]
 gi|218904946|ref|YP_002452780.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH820]
 gi|227813274|ref|YP_002813283.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. CDC 684]
 gi|228947537|ref|ZP_04109827.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229123331|ref|ZP_04252535.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|229601637|ref|YP_002868056.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0248]
 gi|254683475|ref|ZP_05147335.1| DNA polymerase III PolC [Bacillus anthracis str. CNEVA-9066]
 gi|254721996|ref|ZP_05183785.1| DNA polymerase III PolC [Bacillus anthracis str. A1055]
 gi|254756009|ref|ZP_05208040.1| DNA polymerase III PolC [Bacillus anthracis str. Vollum]
 gi|254759330|ref|ZP_05211355.1| DNA polymerase III PolC [Bacillus anthracis str. Australia 94]
 gi|301055308|ref|YP_003793519.1| DNA polymerase III subunit alpha [Bacillus anthracis CI]
 gi|30258465|gb|AAP27684.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. Ames]
 gi|47504393|gb|AAT33069.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49180595|gb|AAT55971.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. Sterne]
 gi|51975139|gb|AAU16689.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
 gi|164711656|gb|EDR17202.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0488]
 gi|170128318|gb|EDS97187.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0389]
 gi|170668165|gb|EDT18914.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0465]
 gi|190560460|gb|EDV14438.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis Tsiankovskii-I]
 gi|196027023|gb|EDX65647.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus NVH0597-99]
 gi|218536830|gb|ACK89228.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH820]
 gi|227006508|gb|ACP16251.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. CDC 684]
 gi|228660107|gb|EEL15743.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|228812057|gb|EEM58388.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229266045|gb|ACQ47682.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0248]
 gi|300377477|gb|ADK06381.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis
           str. CI]
          Length = 1433

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      K+P     +ID
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+
Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|167639871|ref|ZP_02398140.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0193]
 gi|177652036|ref|ZP_02934582.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0174]
 gi|254735856|ref|ZP_05193562.1| DNA polymerase III PolC [Bacillus anthracis str. Western North
           America USA6153]
 gi|167512272|gb|EDR87649.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0193]
 gi|172082405|gb|EDT67470.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0174]
          Length = 1433

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      K+P     +ID
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+
Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|228935132|ref|ZP_04097959.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824497|gb|EEM70302.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 1433

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      K+P     +ID
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+
Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|238854744|ref|ZP_04645074.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 269-3]
 gi|238832534|gb|EEQ24841.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 269-3]
          Length = 1405

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 8/150 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ D     R F  F+ P+    S   + L  ITDE 
Sbjct: 389 VIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTINLTSITDEM 446

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +      + +   F +F+ ++      HN +FDVGF+NA L+R   K+   P  ++DTL 
Sbjct: 447 VSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEITQP--VVDTLE 502

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           ++R  HP  +++ L+SLCK+Y + + H  +
Sbjct: 503 VSRLLHPEQTKHTLDSLCKKYNVVLEHHHR 532


>gi|313472267|ref|ZP_07812759.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 1153]
 gi|239529663|gb|EEQ68664.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 1153]
          Length = 1428

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 8/150 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ D     R F  F+ P+    S   + L  ITDE 
Sbjct: 412 VIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTINLTSITDEM 469

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +      + +   F +F+ ++      HN +FDVGF+NA L+R   K+   P  ++DTL 
Sbjct: 470 VSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEITQP--VVDTLE 525

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           ++R  HP  +++ L+SLCK+Y + + H  +
Sbjct: 526 VSRLLHPEQTKHTLDSLCKKYNVVLEHHHR 555


>gi|160915589|ref|ZP_02077800.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991]
 gi|158432709|gb|EDP10998.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991]
          Length = 1447

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 5/165 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL S+ D IIE G  +++      ++ Q+F+ P         ++L GI++E +
Sbjct: 401 VFDLETTGLSSRFDHIIEFGG-QIVKDRTCIKSLQLFIKPP-VPIPAHIVELTGISEEHV 458

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++  SF+    +  DF    ++  +AHNA FD  F+N+EL RI + PLD + +IDTL +A
Sbjct: 459 RNAKSFAECADQILDFIG--DSILVAHNADFDYNFLNSELVRIGRKPLD-NPVIDTLDLA 515

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R         L  + + YGI       H A  D+ +L++ Y+ M+
Sbjct: 516 RSMQDRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLANTYMNML 560


>gi|282932865|ref|ZP_06338262.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
 gi|281302900|gb|EFA95105.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
          Length = 1439

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 8/150 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ D     R F  F+ P+    S   + L  ITDE 
Sbjct: 423 VIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTINLTSITDEM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +      + +   F +F+ ++      HN +FDVGF+NA L+R   K+   P  ++DTL 
Sbjct: 481 VSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEITQP--VVDTLE 536

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           ++R  HP  +++ L+SLCK+Y + + H  +
Sbjct: 537 VSRLLHPEQTKHTLDSLCKKYNVVLEHHHR 566


>gi|282918963|ref|ZP_06326698.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C427]
 gi|282316773|gb|EFB47147.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C427]
          Length = 1438

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582


>gi|260663976|ref|ZP_05864829.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii SJ-7A-US]
 gi|260561862|gb|EEX27831.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii SJ-7A-US]
          Length = 1439

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 8/150 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ D     R F  F+ P+    S   + L  ITDE 
Sbjct: 423 VIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTINLTSITDEM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +      + +   F +F+ ++      HN +FDVGF+NA L+R   K+   P  ++DTL 
Sbjct: 481 VSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEITQP--VVDTLE 536

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           ++R  HP  +++ L+SLCK+Y + + H  +
Sbjct: 537 VSRLLHPEQTKHTLDSLCKKYNVVLEHHHR 566


>gi|258423895|ref|ZP_05686780.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9635]
 gi|257845924|gb|EEV69953.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9635]
          Length = 1438

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582


>gi|49483427|ref|YP_040651.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282903819|ref|ZP_06311707.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905582|ref|ZP_06313437.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908557|ref|ZP_06316387.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283958007|ref|ZP_06375458.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|297591291|ref|ZP_06949929.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|56748683|sp|Q6GHH1|DPO3_STAAR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|49241556|emb|CAG40242.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282327619|gb|EFB57902.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330874|gb|EFB60388.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595437|gb|EFC00401.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C160]
 gi|283790156|gb|EFC28973.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|297576177|gb|EFH94893.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|315194152|gb|EFU24545.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS00]
          Length = 1438

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582


>gi|283470479|emb|CAQ49690.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 1438

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582


>gi|320140919|gb|EFW32766.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 1436

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 479 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580


>gi|269940755|emb|CBI49137.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 1438

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582


>gi|269202881|ref|YP_003282150.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|295406201|ref|ZP_06816008.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297244429|ref|ZP_06928312.1| DNA polymerase III [Staphylococcus aureus A8796]
 gi|262075171|gb|ACY11144.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|294968789|gb|EFG44811.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297178459|gb|EFH37705.1| DNA polymerase III [Staphylococcus aureus A8796]
          Length = 1436

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 479 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580


>gi|257425318|ref|ZP_05601743.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427979|ref|ZP_05604377.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430612|ref|ZP_05606994.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433372|ref|ZP_05609730.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436214|ref|ZP_05612261.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M876]
 gi|282910836|ref|ZP_06318639.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914041|ref|ZP_06321828.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924086|ref|ZP_06331762.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C101]
 gi|293501073|ref|ZP_06666924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510035|ref|ZP_06668743.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M809]
 gi|293526621|ref|ZP_06671306.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257271775|gb|EEV03913.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274820|gb|EEV06307.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278740|gb|EEV09359.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281465|gb|EEV11602.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284496|gb|EEV14616.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M876]
 gi|282314058|gb|EFB44450.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C101]
 gi|282322109|gb|EFB52433.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325441|gb|EFB55750.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|290920693|gb|EFD97756.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291096078|gb|EFE26339.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466979|gb|EFF09497.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M809]
 gi|312438356|gb|ADQ77427.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH60]
          Length = 1438

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582


>gi|15924254|ref|NP_371788.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926847|ref|NP_374380.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus N315]
 gi|148267754|ref|YP_001246697.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH9]
 gi|150393813|ref|YP_001316488.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH1]
 gi|156979585|ref|YP_001441844.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315620|ref|ZP_04838833.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006051|ref|ZP_05144652.2| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795680|ref|ZP_05644659.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|258416083|ref|ZP_05682351.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|258421666|ref|ZP_05684590.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
           A9719]
 gi|258434822|ref|ZP_05688896.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A9299]
 gi|258444602|ref|ZP_05692931.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A8115]
 gi|258447565|ref|ZP_05695709.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6300]
 gi|258449407|ref|ZP_05697510.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6224]
 gi|258454786|ref|ZP_05702750.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5937]
 gi|282892752|ref|ZP_06300987.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A8117]
 gi|282927606|ref|ZP_06335222.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A10102]
 gi|296274822|ref|ZP_06857329.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MR1]
 gi|54036992|sp|P63982|DPO3_STAAN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040953|sp|P63981|DPO3_STAAM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217451|sp|A7X1P4|DPO3_STAA1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13701064|dbj|BAB42359.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247034|dbj|BAB57426.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147740823|gb|ABQ49121.1| DNA polymerase III catalytic subunit, PolC type [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946265|gb|ABR52201.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721720|dbj|BAF78137.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257789652|gb|EEV27992.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|257839231|gb|EEV63707.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|257842352|gb|EEV66777.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
           A9719]
 gi|257849183|gb|EEV73165.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A9299]
 gi|257850095|gb|EEV74048.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A8115]
 gi|257853756|gb|EEV76715.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6300]
 gi|257857395|gb|EEV80293.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6224]
 gi|257863169|gb|EEV85933.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5937]
 gi|282590609|gb|EFB95686.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A10102]
 gi|282764749|gb|EFC04874.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A8117]
 gi|285816946|gb|ADC37433.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981]
 gi|312829658|emb|CBX34500.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315131058|gb|EFT87042.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727084|gb|EGG63540.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21172]
          Length = 1438

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582


>gi|21282876|ref|NP_645964.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MW2]
 gi|49486103|ref|YP_043324.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|151221386|ref|YP_001332208.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|221142498|ref|ZP_03566991.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258452563|ref|ZP_05700569.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5948]
 gi|262048156|ref|ZP_06021043.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           D30]
 gi|262051326|ref|ZP_06023549.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           930918-3]
 gi|282920508|ref|ZP_06328229.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9765]
 gi|284024257|ref|ZP_06378655.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus 132]
 gi|297208090|ref|ZP_06924521.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300912171|ref|ZP_07129614.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381172|ref|ZP_07363825.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|56748669|sp|Q6G9U9|DPO3_STAAS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|73919251|sp|Q5HGG7|DPO3_STAAC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|172049022|sp|A6QGG4|DPO3_STAAE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21204315|dbj|BAB95012.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244546|emb|CAG42975.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|150374186|dbj|BAF67446.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|257859781|gb|EEV82623.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5948]
 gi|259160701|gb|EEW45722.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           930918-3]
 gi|259163722|gb|EEW48277.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           D30]
 gi|282594170|gb|EFB99157.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9765]
 gi|296887333|gb|EFH26235.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300886417|gb|EFK81619.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|302751087|gb|ADL65264.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340155|gb|EFM06096.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315198506|gb|EFU28835.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS01]
 gi|329313934|gb|AEB88347.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus T0131]
 gi|329727848|gb|EGG64299.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 1438

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582


>gi|329733603|gb|EGG69931.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 1438

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582


>gi|57651834|ref|YP_186140.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus COL]
 gi|87161645|ref|YP_493854.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194974|ref|YP_499774.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|161509430|ref|YP_001575089.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294848260|ref|ZP_06789007.1| DNA polymerase III [Staphylococcus aureus A9754]
 gi|56749834|sp|P68852|DPO3_STAAW RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|110808208|sp|Q2G1Z8|DPO3_STAA8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123486180|sp|Q2FHH4|DPO3_STAA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|12082347|dbj|BAB20885.1| PolC [Staphylococcus aureus]
 gi|57286020|gb|AAW38114.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127619|gb|ABD22133.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202532|gb|ABD30342.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|160368239|gb|ABX29210.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|294825060|gb|EFG41482.1| DNA polymerase III [Staphylococcus aureus A9754]
          Length = 1436

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 479 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580


>gi|282916524|ref|ZP_06324282.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770328|ref|ZP_06343220.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           H19]
 gi|282319011|gb|EFB49363.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460475|gb|EFC07565.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           H19]
          Length = 1438

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582


>gi|302332870|gb|ADL23063.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 1438

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582


>gi|256851261|ref|ZP_05556650.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 27-2-CHN]
 gi|260660685|ref|ZP_05861600.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 115-3-CHN]
 gi|282934729|ref|ZP_06339972.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
 gi|297206128|ref|ZP_06923523.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16]
 gi|256616323|gb|EEU21511.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 27-2-CHN]
 gi|260548407|gb|EEX24382.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 115-3-CHN]
 gi|281301304|gb|EFA93605.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
 gi|297149254|gb|EFH29552.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16]
          Length = 1439

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 8/150 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ D     R F  F+ P+    S   + L  ITDE 
Sbjct: 423 VIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTINLTSITDEM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +      + +   F +F+ ++      HN +FDVGF+NA L+R   K+   P  ++DTL 
Sbjct: 481 VSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEITQP--VVDTLE 536

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           ++R  HP  +++ L+SLCK+Y + + H  +
Sbjct: 537 VSRLLHPEQTKHTLDSLCKKYNVVLEHHHR 566


>gi|642270|emb|CAA88043.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1415

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 479 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580


>gi|323443912|gb|EGB01523.1| DNA polymerase III PolC [Staphylococcus aureus O46]
          Length = 1436

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 479 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580


>gi|298694556|gb|ADI97778.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 1436

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 479 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580


>gi|295427751|ref|ZP_06820383.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128109|gb|EFG57743.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 1436

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 479 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580


>gi|253733498|ref|ZP_04867663.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728552|gb|EES97281.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 1438

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582


>gi|239636258|ref|ZP_04677260.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus warneri L37603]
 gi|239597613|gb|EEQ80108.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus warneri L37603]
          Length = 1438

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+  K S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPH-EKLSETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LTDAPEIEDVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTDYGKHGLNFLAKKYGVDLTQH--HRAIYDTEATAYIFIKMV 582


>gi|323441043|gb|EGA98750.1| DNA polymerase III PolC [Staphylococcus aureus O11]
          Length = 1436

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 479 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580


>gi|253731883|ref|ZP_04866048.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724293|gb|EES93022.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|320144365|gb|EFW36131.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 1442

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 427 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 485 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 541

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 586


>gi|110808209|sp|P0C1P9|DPO3_STAAU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1483182|dbj|BAA13160.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1435

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 479 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580


>gi|289177416|gb|ADC84662.1| DNA polymerase III, epsilon chain [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 190

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 87/159 (54%), Gaps = 7/159 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D+ETTG  ++NDRI EIGAV++ D    +R  Q  L   GR+ S    +L GI+
Sbjct: 11  MNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDRFTQ--LVNPGRRVSARITELTGIS 68

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125
           +E L+D+P    I  +F  +   +N   + HN KFD+ F+ A  +R+  D    S R ID
Sbjct: 69  NEMLEDQPVIEDILGDFIHW--TENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRPID 126

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           T+ I R   PS R+ L  L +RYG  I    +H AL D+
Sbjct: 127 TMHIDRLLFPSERHRLVDLIQRYG--IGDVEEHRALSDA 163


>gi|30021907|ref|NP_833538.1| DNA polymerase III PolC [Bacillus cereus ATCC 14579]
 gi|229146389|ref|ZP_04274760.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
 gi|81433857|sp|Q819Y5|DPO3_BACCR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|29897463|gb|AAP10739.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
 gi|228637022|gb|EEK93481.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
          Length = 1435

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 421 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  + + +IDTL +
Sbjct: 479 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 535

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 536 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 580


>gi|15639630|ref|NP_219080.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025868|ref|YP_001933640.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
           pallidum SS14]
 gi|6014996|sp|O83649|DPO3E_TREPA RecName: Full=DNA polymerase III subunit epsilon
 gi|3322942|gb|AAC65617.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018443|gb|ACD71061.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060013|gb|ADD72748.1| DNA polymerase III subunit epsilon [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 215

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 95/174 (54%), Gaps = 10/174 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTGL ++ DRIIEIGAV   D       F   + P+ R   P+  K++ ITD+ L 
Sbjct: 18  FDTETTGLKAEEDRIIEIGAVT-FDRKGIIARFSTLIFPD-RAIPPDVSKINHITDDMLV 75

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           +KP F  I S+F  F   +    +AHNA FDV F+NAEL    K PL   +++DT ++A+
Sbjct: 76  NKPRFCEIVSDFSRFI--KGTVLVAHNANFDVEFLNAELSLCKKQPLS-HKVVDTYAMAQ 132

Query: 132 RKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
              P     +  L +L  ++G+T+   + H A  D+ +  +++  M+   ++ N
Sbjct: 133 AVFPGLGRHQYRLQNLALQFGLTV--HAAHRAEDDARVCMELFTTMIAHHAKQN 184


>gi|228909642|ref|ZP_04073465.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
 gi|228849931|gb|EEM94762.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
          Length = 1435

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 421 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  + + +IDTL +
Sbjct: 479 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 535

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 536 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 580


>gi|228954094|ref|ZP_04116123.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805660|gb|EEM52250.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 1433

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  + + +IDTL +
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|206972660|ref|ZP_03233601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH1134]
 gi|218234060|ref|YP_002368619.1| DNA polymerase III PolC [Bacillus cereus B4264]
 gi|228960034|ref|ZP_04121698.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047504|ref|ZP_04193094.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|229071316|ref|ZP_04204539.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|229081073|ref|ZP_04213583.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|229111289|ref|ZP_04240842.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|229129094|ref|ZP_04258067.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|229152017|ref|ZP_04280212.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|229180094|ref|ZP_04307438.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|229191987|ref|ZP_04318957.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|296504313|ref|YP_003666013.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
 gi|206732417|gb|EDZ49598.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH1134]
 gi|218162017|gb|ACK62009.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus B4264]
 gi|228591538|gb|EEK49387.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|228603303|gb|EEK60780.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|228631366|gb|EEK88000.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|228654331|gb|EEL10196.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|228672065|gb|EEL27356.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|228702117|gb|EEL54593.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|228711770|gb|EEL63722.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|228723751|gb|EEL75106.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|228799550|gb|EEM46503.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296325365|gb|ADH08293.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
          Length = 1433

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  + + +IDTL +
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|75760862|ref|ZP_00740876.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491646|gb|EAO54848.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 1435

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 421 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  + + +IDTL +
Sbjct: 479 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 535

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 536 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 580


>gi|228922572|ref|ZP_04085872.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837001|gb|EEM82342.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 1433

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  + + +IDTL +
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|218898970|ref|YP_002447381.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9842]
 gi|228902321|ref|ZP_04066478.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
 gi|228966763|ref|ZP_04127807.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218545449|gb|ACK97843.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9842]
 gi|228792862|gb|EEM40420.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857290|gb|EEN01793.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
          Length = 1433

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  + + +IDTL +
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|229031448|ref|ZP_04187448.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
 gi|228729737|gb|EEL80717.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
          Length = 1433

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  + + +IDTL +
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|229157394|ref|ZP_04285472.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
 gi|228626121|gb|EEK82870.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
          Length = 1433

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  + + +IDTL +
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|183602347|ref|ZP_02963713.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019]
 gi|241191299|ref|YP_002968693.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196705|ref|YP_002970260.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218266|gb|EDT88911.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019]
 gi|240249691|gb|ACS46631.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251259|gb|ACS48198.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794292|gb|ADG33827.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 188

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 87/159 (54%), Gaps = 7/159 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D+ETTG  ++NDRI EIGAV++ D    +R  Q  L   GR+ S    +L GI+
Sbjct: 9   MNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDRFTQ--LVNPGRRVSARITELTGIS 66

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125
           +E L+D+P    I  +F  +   +N   + HN KFD+ F+ A  +R+  D    S R ID
Sbjct: 67  NEMLEDQPVIEDILGDFIHW--TENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRPID 124

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           T+ I R   PS R+ L  L +RYG  I    +H AL D+
Sbjct: 125 TMHIDRLLFPSERHRLVDLIQRYG--IGDVEEHRALSDA 161


>gi|228940906|ref|ZP_04103465.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973835|ref|ZP_04134411.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980424|ref|ZP_04140734.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228779244|gb|EEM27501.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228785860|gb|EEM33863.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818742|gb|EEM64808.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326941584|gb|AEA17480.1| DNA polymerase III PolC [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 1433

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  + + +IDTL +
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|229174484|ref|ZP_04302016.1| DNA polymerase III polC-type [Bacillus cereus MM3]
 gi|228609044|gb|EEK66334.1| DNA polymerase III polC-type [Bacillus cereus MM3]
          Length = 1433

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  + + +IDTL +
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|317495743|ref|ZP_07954108.1| DNA polymerase III [Gemella moribillum M424]
 gi|316914196|gb|EFV35677.1| DNA polymerase III [Gemella moribillum M424]
          Length = 1446

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 112/177 (63%), Gaps = 10/177 (5%)

Query: 3   RKNKMRK---IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           +K K+R+   +VFD+ETTGL ++ DR+IEI AV++ + ++ + +F+ ++ P  R  S   
Sbjct: 417 KKLKLREATYVVFDVETTGLSAERDRLIEIAAVKVKNGAEID-SFESYINPE-RPISELI 474

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L  ITD+ ++D P    + ++F+++ +E +   +AHNAKFD+GFI+   +R+  +  +
Sbjct: 475 TRLTSITDDDVRDAPVEKEVMTDFYNWLDEDDI-LVAHNAKFDLGFIDKSFERLGLENKN 533

Query: 120 PSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +  IDTL I+R ++  + R+ L++L K Y + +     H A+ D+   ++++IKM+
Sbjct: 534 NAS-IDTLFISRAENKEAKRHGLSNLAKMYKVRLVQH--HRAIYDTKATAEIFIKML 587


>gi|228986961|ref|ZP_04147087.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772739|gb|EEM21179.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 1433

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  + + +IDTL +
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|229162754|ref|ZP_04290711.1| DNA polymerase III polC-type [Bacillus cereus R309803]
 gi|228620636|gb|EEK77505.1| DNA polymerase III polC-type [Bacillus cereus R309803]
          Length = 1433

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  + + +IDTL +
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|310641590|ref|YP_003946348.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2]
 gi|309246540|gb|ADO56107.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2]
          Length = 1438

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 10/174 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTGL    ++IIEI AV++ +  + +R +  F+ P+ R   P  + +L  I DE
Sbjct: 422 VVFDIETTGLSVTQNKIIEIAAVKMHEGKEIDR-YATFVNPHER--IPYNIQQLTNINDE 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  EF  F    +A  +AHNA+FD+GFI A L+++   P   + ++DTL 
Sbjct: 479 MVKDAPDVEPVMKEFVAFAG--DAVLVAHNARFDIGFIQATLRKMGL-PEMTNPVLDTLE 535

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +AR   P+ +N  LN+L  +Y + +   S H A+ D+  L++V   ++    QI
Sbjct: 536 LARLLFPTMKNHRLNTLTSKYKVAL--ESHHRAIDDTVALTEVLNGLLNDAEQI 587


>gi|220927905|ref|YP_002504814.1| DNA polymerase III PolC [Clostridium cellulolyticum H10]
 gi|219998233|gb|ACL74834.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10]
          Length = 1433

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 92/167 (55%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL+ + DRI EIGAV++ +    +R F  F+ P G       +KL GIT++ 
Sbjct: 423 VVFDIETTGLNPQQDRITEIGAVKVRNGQIVDR-FSAFVNP-GVSIPSFIVKLTGITNDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P    + +EF +F   Q +  +AHNA FDVGFI    + I +   +P   +DTL +
Sbjct: 481 VKDAPPIEQVLNEFMEFI--QGSVLVAHNANFDVGFIKHNAKIIGEKVKNP--YLDTLEL 536

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R+  P   R  LN + K   I + +   H A+ DS   + ++I  +
Sbjct: 537 CRKMFPELGRYKLNIVAKHLKIELENH--HRAVDDSMATAKIFIHCL 581


>gi|296330873|ref|ZP_06873348.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674391|ref|YP_003866063.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151878|gb|EFG92752.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412635|gb|ADM37754.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 1437

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 97/167 (58%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+ R  S   ++L GITD+ 
Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+D P    +  +F ++  +     +AHNA FD+GF+N   +++ +     + +IDTL +
Sbjct: 480 LRDAPDVVDVIRDFREWIGDDI--LVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLEL 537

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R  +P  +N  LN+LCK++ I ++    H A+ D+   + + +KM+
Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKML 582


>gi|47569095|ref|ZP_00239784.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
 gi|47554257|gb|EAL12619.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
          Length = 1433

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +  + + +IDTL +
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|167635812|ref|ZP_02394121.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0442]
 gi|254739618|ref|ZP_05197312.1| DNA polymerase III PolC [Bacillus anthracis str. Kruger B]
 gi|167528769|gb|EDR91527.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0442]
          Length = 1433

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      K+P     +ID
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINIGFKKAGLEKTKNP-----VID 529

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+
Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|229019012|ref|ZP_04175854.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
 gi|229025258|ref|ZP_04181678.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228736011|gb|EEL86586.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228742340|gb|EEL92498.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
          Length = 1433

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      K+P     +ID
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 530 TLELARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|16078721|ref|NP_389540.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221309536|ref|ZP_03591383.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221313860|ref|ZP_03595665.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221318783|ref|ZP_03600077.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323055|ref|ZP_03604349.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|118793|sp|P13267|DPO3_BACSU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|40060|emb|CAA36362.1| unnamed protein product [Bacillus subtilis]
 gi|2634030|emb|CAB13531.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 1437

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 97/167 (58%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+ R  S   ++L GITD+ 
Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+D P    +  +F ++  +     +AHNA FD+GF+N   +++ +     + +IDTL +
Sbjct: 480 LQDAPDVVDVIRDFREWIGDDI--LVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLEL 537

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R  +P  +N  LN+LCK++ I ++    H A+ D+   + + +KM+
Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKML 582


>gi|229168557|ref|ZP_04296280.1| DNA polymerase III polC-type [Bacillus cereus AH621]
 gi|228614963|gb|EEK72065.1| DNA polymerase III polC-type [Bacillus cereus AH621]
          Length = 1433

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      K+P     +ID
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGIEKTKNP-----VID 529

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 530 TLELARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|288556947|ref|YP_003428882.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4]
 gi|288548107|gb|ADC51990.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4]
          Length = 1432

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 96/168 (57%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + IIE+ AV++ +    +R F+ F  P+    +   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYNTIIELAAVKIKNGEIIDR-FESFADPH-EPLTNTIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +K +P    +  +F +F     A  +AHNA FD+GF+N   Q+I   D  +P  +IDTL 
Sbjct: 477 VKGQPEVGEVLKDFHEFVG--TATLVAHNASFDMGFLNVGYQKIGLGDATNP--VIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + R  +P  +N  LN+LCK++ I +   S H A+ D+     +  KM+
Sbjct: 533 LGRFLYPELKNHRLNTLCKKFDIELV--SHHRAIYDAEATGYLLWKMV 578


>gi|229092858|ref|ZP_04223992.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
 gi|228690480|gb|EEL44263.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
          Length = 1433

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      K+P     +ID
Sbjct: 477 LIDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+
Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|163941555|ref|YP_001646439.1| DNA polymerase III PolC [Bacillus weihenstephanensis KBAB4]
 gi|163863752|gb|ABY44811.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 1433

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      K+P     +ID
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGIEKTKNP-----VID 529

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 530 TLELARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|227892603|ref|ZP_04010408.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
 gi|227865588|gb|EEJ73009.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
          Length = 1435

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 8/150 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S + + L  ITDE 
Sbjct: 419 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH-HPLSEQTINLTSITDEM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +      + +  +F DF+ ++      HN +FDVGF+NA L+R   K+   P  ++DTL 
Sbjct: 477 VSAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEITQP--VVDTLE 532

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           ++R  HP  +R+ L+SL K+Y +++ H  +
Sbjct: 533 VSRLLHPEQNRHTLDSLAKKYNVSLEHHHR 562


>gi|229134625|ref|ZP_04263435.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
 gi|228648886|gb|EEL04911.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
          Length = 1433

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      K+P     +ID
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGIEKTKNP-----VID 529

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 530 TLELARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|321315425|ref|YP_004207712.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
 gi|320021699|gb|ADV96685.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
          Length = 1437

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 97/167 (58%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+ R  S   ++L GITD+ 
Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+D P    +  +F ++  +     +AHNA FD+GF+N   +++ +     + +IDTL +
Sbjct: 480 LQDAPDVVDVIRDFREWIGDDI--LVAHNASFDMGFLNVAYKKLLEVDKAKNPVIDTLEL 537

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R  +P  +N  LN+LCK++ I ++    H A+ D+   + + +KM+
Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKML 582


>gi|291484213|dbj|BAI85288.1| DNA polymerase III PolC [Bacillus subtilis subsp. natto BEST195]
          Length = 1437

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 97/167 (58%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+ R  S   ++L GITD+ 
Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+D P    +  +F ++  +     +AHNA FD+GF+N   +++ +     + +IDTL +
Sbjct: 480 LQDAPDVVDVIRDFREWIGDDI--LVAHNASFDMGFLNVAYKKLLEVDKAKNPVIDTLEL 537

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R  +P  +N  LN+LCK++ I ++    H A+ D+   + + +KM+
Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKML 582


>gi|229013001|ref|ZP_04170166.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
 gi|228748255|gb|EEL98115.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
          Length = 1435

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 421 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      K+P     +ID
Sbjct: 479 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGIEKTKNP-----VID 531

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 532 TLELARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 580


>gi|228916455|ref|ZP_04080021.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843034|gb|EEM88116.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 1433

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 94/171 (54%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           L D P    +F +F  +  +     +AHNA FD+GFIN   ++      K+P     +ID
Sbjct: 477 LTDAPEVDEVFKKFEKWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+
Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|229117304|ref|ZP_04246682.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
 gi|228666204|gb|EEL21668.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
          Length = 1435

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 94/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 421 VVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      + + +IDTL +
Sbjct: 479 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLAKTN-NPVIDTLEL 535

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 536 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 580


>gi|229104380|ref|ZP_04235049.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
 gi|228679078|gb|EEL33286.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
          Length = 1433

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 94/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      + + +IDTL +
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLAKTN-NPVIDTLEL 533

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|320535302|ref|ZP_08035422.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Treponema phagedenis F0421]
 gi|320147834|gb|EFW39330.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Treponema phagedenis F0421]
          Length = 216

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 10/151 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTGL  + D ++EIG ++  D+      F + + P G+    +   ++ ITD  L 
Sbjct: 18  FDTETTGLKQEEDSVVEIGGIKF-DHRGVIARFNILINP-GKPMPEDVTAVNNITDAMLA 75

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           DKP F+++  +F  F   +    +AHNA FD+GFIN EL+R  K PL  +++IDTL +A+
Sbjct: 76  DKPPFNAVIPDFLRFI--KKTVLVAHNAPFDIGFINNELKRCKKPPLT-NKVIDTLVLAQ 132

Query: 132 RKHPS---SRNDLNSLCKRYGITI--SHRSK 157
              P     +  L +L  ++GIT   +HR++
Sbjct: 133 EVFPGLGKHQYRLQNLALQFGITALEAHRAE 163


>gi|300813717|ref|ZP_07094037.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512174|gb|EFK39354.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 1415

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 98/162 (60%), Gaps = 11/162 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           +VFDIETTGL    D+I EIGAV+++D   T R  Q+    N +   PE ++ L  IT+ 
Sbjct: 402 VVFDIETTGLSPIRDKITEIGAVKIVDGIITERFSQLI---NPQMLIPEKVQELTRITNA 458

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++++P+   +  +F+DF   +++  +AHNAKFD  FI    +  + D ++P  I+DTLS
Sbjct: 459 LVENEPTIEEVAPKFYDFI--KDSVLVAHNAKFDTAFIRRVFKENDLDFINP--ILDTLS 514

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
            AR     ++  +L +LCK++G+++  +HR+ + A   +HL 
Sbjct: 515 FARATVKDTKKFNLATLCKKFGVSLVGAHRAVNDAEATAHLF 556


>gi|229098287|ref|ZP_04229234.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
 gi|228685185|gb|EEL39116.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
          Length = 1433

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 94/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      + + +IDTL +
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLAKTN-NPVIDTLEL 533

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+
Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|282882108|ref|ZP_06290749.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus lacrimalis 315-B]
 gi|281298138|gb|EFA90593.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus lacrimalis 315-B]
          Length = 1415

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 98/162 (60%), Gaps = 11/162 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           +VFDIETTGL    D+I EIGAV+++D   T R  Q+    N +   PE ++ L  IT+ 
Sbjct: 402 VVFDIETTGLSPIRDKITEIGAVKIVDGIITERFSQLI---NPQMLIPEKVQELTRITNA 458

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++++P+   +  +F+DF   +++  +AHNAKFD  FI    +  + D ++P  I+DTLS
Sbjct: 459 LVENEPTIEEVAPKFYDFI--KDSVLVAHNAKFDTAFIRRVFKENDLDFINP--ILDTLS 514

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
            AR     ++  +L +LCK++G+++  +HR+ + A   +HL 
Sbjct: 515 FARATVKDTKKFNLATLCKKFGVSLVGAHRAVNDAEATAHLF 556


>gi|18310673|ref|NP_562607.1| DNA polymerase III PolC [Clostridium perfringens str. 13]
 gi|168214476|ref|ZP_02640101.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens CPE str. F4969]
 gi|24418366|sp|Q8XJR3|DPO3_CLOPE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|18145354|dbj|BAB81397.1| DNA polymerase III alpha subunit [Clostridium perfringens str. 13]
 gi|170714031|gb|EDT26213.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens CPE str. F4969]
          Length = 1449

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 94/169 (55%), Gaps = 11/169 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTG  SKND+IIEIGAV+L D  +   +F  F+ P  + N P  + +L  IT  
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKD-GEIVDSFSTFVDP--KVNIPYKITELTSITQN 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P+   +  +F +F    N+  +AHNA FDVGFI   L  + K   +P  ++DT+ 
Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--NSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548

Query: 129 IARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKM 174
           +AR  +P  +   LN + K  GI++   HR+   A   + +L   + KM
Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKM 597


>gi|326204061|ref|ZP_08193922.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
           2782]
 gi|325985828|gb|EGD46663.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
           2782]
          Length = 1433

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 9/164 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL+   D+I EIGAV++ +    +R F  F+ P G       +KL GITD+ 
Sbjct: 423 VVFDIETTGLNPHQDKITEIGAVKVRNGQIVDR-FSAFVNP-GVSIPSFIVKLTGITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P    + +EF +F   Q +  +AHNA FDVGFI    + + +   +P   IDTL +
Sbjct: 481 VKDAPPVEQVLNEFMEFI--QGSVLVAHNANFDVGFIKQNAKLMGEKVKNP--YIDTLEL 536

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            R+  P   R  LN + K   I + +   H A+ DS   + +++
Sbjct: 537 CRKMFPELGRYKLNIVAKHLKIELENH--HRAVDDSMATAKIFM 578


>gi|304404288|ref|ZP_07385950.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus
           YK9]
 gi|304347266|gb|EFM13098.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus
           YK9]
          Length = 1439

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 93/168 (55%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL   N +IIE+  V++    + +R F  F+ P+  K      +L  ITDE 
Sbjct: 424 VVFDIETTGLSIINCKIIELAGVKMRGGQEIDR-FSTFINPH-EKIPYHIQQLTNITDEM 481

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           + D P       EF +F    +A  +AHNA+FD+GFI A  + I   + ++P  ++DTL 
Sbjct: 482 VVDAPELEPKLREFVEFIG--DAVLVAHNARFDIGFIQANCKAIGLPEVMNP--VLDTLE 537

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR  HPS +N  LN+L  RY I + +   H A+ DS  L  V   ++
Sbjct: 538 LARFLHPSMKNHRLNTLSARYKINLENH--HRAIDDSIALGGVLFGLI 583


>gi|309776025|ref|ZP_07671017.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916307|gb|EFP62055.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 1271

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 94/181 (51%), Gaps = 18/181 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL- 60
           I   K    VFD+ETTGL S+ D IIE G  +++      ++ Q+F+ P      P AL 
Sbjct: 214 IELEKGTYCVFDLETTGLSSRFDHIIEFGG-QIVKDRACIKSLQMFIKP------PVALS 266

Query: 61  ----KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
               +L GIT+E +K+  SF+    E  DF    ++  +AHNA FD  F+N EL RI + 
Sbjct: 267 AFTTELTGITEEHMKNAKSFADSIDEILDFIG--DSILVAHNATFDYNFLNDELARIGRK 324

Query: 117 P-LDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           P ++P  +IDTL +AR      +   L  + + YGI       H A  D+ +L+  Y+ M
Sbjct: 325 PIMNP--VIDTLDLARSMQADRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLAQTYMNM 382

Query: 175 M 175
           +
Sbjct: 383 L 383


>gi|110801936|ref|YP_698978.1| DNA polymerase III PolC [Clostridium perfringens SM101]
 gi|110682437|gb|ABG85807.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens SM101]
          Length = 1449

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 94/169 (55%), Gaps = 11/169 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTG  SKND+IIEIGAV+L D  +   +F  F+ P  + N P  + +L  IT  
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKD-GEIVDSFSTFVDP--KVNIPYKITELTSITQN 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P+   +  +F +F    N+  +AHNA FDVGFI   L  + K   +P  ++DT+ 
Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--NSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548

Query: 129 IARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKM 174
           +AR  +P  +   LN + K  GI++   HR+   A   + +L   + KM
Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKM 597


>gi|313899185|ref|ZP_07832705.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. HGF2]
 gi|312956008|gb|EFR37656.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. HGF2]
          Length = 1448

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 94/181 (51%), Gaps = 18/181 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL- 60
           I   K    VFD+ETTGL S+ D IIE G  +++      ++ Q+F+ P      P AL 
Sbjct: 391 IELEKGTYCVFDLETTGLSSRFDHIIEFGG-QIVKDRACIKSLQLFIKP------PVALS 443

Query: 61  ----KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
               +L GIT+E +K+  SF+    E  DF    ++  +AHNA FD  F+N EL RI + 
Sbjct: 444 AFTTELTGITEEHMKNAKSFADSIDEILDFIG--DSILVAHNATFDYNFLNDELARIGRP 501

Query: 117 P-LDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           P ++P  +IDTL +AR      +   L  + + YGI       H A  D+ +L+  Y+ M
Sbjct: 502 PIMNP--VIDTLDLARSMQADRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLAQTYMNM 559

Query: 175 M 175
           +
Sbjct: 560 L 560


>gi|330685683|gb|EGG97324.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU121]
          Length = 1438

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+  K S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPH-EKLSETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + ++F ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LTDAPEIEDVLTDFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVDLTQH--HRAIYDTEATAYIFIKMV 582


>gi|311068180|ref|YP_003973103.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
 gi|310868697|gb|ADP32172.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
          Length = 1437

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 96/167 (57%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+    S   ++L GITD+ 
Sbjct: 422 IVFDVETTGLSAVYDTIIELAAVKIRGGEIIDK-FERFANPH-HPLSATTIELTGITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D P    +  +F ++ ++     +AHNA FD+GF+N   +R+ K     + +IDTL +
Sbjct: 480 VRDAPDVIDVVRDFREWIDDDI--LVAHNASFDMGFLNVAYKRLLKVEKAQNPVIDTLEL 537

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R  +P  +N  LN+LCK++ I ++    H A+ D+     + +KM+
Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLLLKML 582


>gi|256112395|ref|ZP_05453316.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3
          str. Ether]
 gi|265993832|ref|ZP_06106389.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3
          str. Ether]
 gi|262764813|gb|EEZ10734.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3
          str. Ether]
          Length = 80

 Score = 91.7 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/80 (55%), Positives = 57/80 (71%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +HGI+
Sbjct: 1  MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60

Query: 67 DEFLKDKPSFSSIFSEFWDF 86
          +E L DKP F+ I  EF +F
Sbjct: 61 NEQLLDKPVFAEILDEFLEF 80


>gi|300361904|ref|ZP_07058081.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03]
 gi|300354523|gb|EFJ70394.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03]
          Length = 1432

 Score = 91.7 bits (226), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S   + L  ITDE 
Sbjct: 416 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH-HPLSDTTINLTSITDEM 473

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +        +  +F DF+ ++      HN +FDVGF+NA L+R   D +    ++DTL +
Sbjct: 474 VGAADDEKDVIKKFKDFYGDR--PLCGHNVQFDVGFVNAALRRAGLDEIS-QPVVDTLEV 530

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  +R+ L+SL K+Y + + H  +
Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEHHHR 559


>gi|226323840|ref|ZP_03799358.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
 gi|225207389|gb|EEG89743.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
          Length = 1535

 Score = 91.7 bits (226), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 97/169 (57%), Gaps = 13/169 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG  +  DRIIEIGAV++ D   T++ F  F+ P  R       +L  ITDE 
Sbjct: 490 VVFDIETTGFSAVTDRIIEIGAVKVEDGKITDK-FSTFVNPK-RPIPFRITELTSITDEM 547

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127
           + D P   +I  +F +F    +A  +AHNA FDVGFI  N + Q+I  D       +DT+
Sbjct: 548 VIDSPDIETILPQFIEFIG--DAVLVAHNASFDVGFIEQNCKRQKIEAD----FTYVDTV 601

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++AR   P+ +R  L+++ K   + IS  + H A+ D+   +++++K +
Sbjct: 602 ALARVLLPALNRFKLDTVAK--ALNISLENHHRAVDDAGCTAEIFVKFV 648


>gi|282850817|ref|ZP_06260191.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 224-1]
 gi|282557769|gb|EFB63357.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 224-1]
          Length = 1389

 Score = 91.7 bits (226), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S   + L  ITDE 
Sbjct: 373 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH-HPLSDTTINLTSITDEM 430

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +        +  +F DF+ ++      HN +FDVGF+NA L+R   D +    ++DTL +
Sbjct: 431 VGAADDEKDVIKKFKDFYGDR--PLCGHNVQFDVGFVNAALRRAGLDEIS-QPVVDTLEV 487

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  +R+ L+SL K+Y + + H  +
Sbjct: 488 SRLLHPEQTRHTLDSLAKKYNVVLEHHHR 516


>gi|238852616|ref|ZP_04643026.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 202-4]
 gi|238834762|gb|EEQ26989.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 202-4]
          Length = 1432

 Score = 91.7 bits (226), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S   + L  ITDE 
Sbjct: 416 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH-HPLSDTTINLTSITDEM 473

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +        +  +F DF+ ++      HN +FDVGF+NA L+R   D +    ++DTL +
Sbjct: 474 VGAADDEKDVIKKFKDFYGDR--PLCGHNVQFDVGFVNAALRRAGLDEIS-QPVVDTLEV 530

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  +R+ L+SL K+Y + + H  +
Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEHHHR 559


>gi|116629466|ref|YP_814638.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           ATCC 33323]
 gi|116095048|gb|ABJ60200.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           gasseri ATCC 33323]
          Length = 1432

 Score = 91.7 bits (226), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S   + L  ITDE 
Sbjct: 416 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH-HPLSDTTINLTSITDEM 473

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +        +  +F DF+ ++      HN +FDVGF+NA L+R   D +    ++DTL +
Sbjct: 474 VGAADDEKDVIKKFKDFYGDR--PLCGHNVQFDVGFVNAALRRAGLDEIS-QPVVDTLEV 530

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  +R+ L+SL K+Y + + H  +
Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEHHHR 559


>gi|229824922|ref|ZP_04450991.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC
           49176]
 gi|229790925|gb|EEP27039.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC
           49176]
          Length = 1463

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 104/187 (55%), Gaps = 16/187 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTG   KN RIIEIGAV+++   K    F  F+ P  +++ PE + KL  IT +
Sbjct: 436 VVFDIETTGFGPKNCRIIEIGAVKVMG-GKVIDKFSAFVNP--KQSIPEEITKLTSITQD 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++P    I   F +F   +    +AHNA FD  FI   ++R+  +  +   I DT++
Sbjct: 493 MVINEPEIDVILPAFLEFC--KGCFLVAHNASFDTSFIFENMKRLGLN--EDFTIADTVT 548

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV-----GGSQIN 182
           I+R   P  +N  L+++ +R GIT+ H   H A+ D+   +++YIK+        G+++ 
Sbjct: 549 ISRVLLPGLKNYKLDTVAERLGITLEHH--HRAVDDAGCTAEIYIKLCELAVTKYGNELL 606

Query: 183 FGFKTNE 189
             F TNE
Sbjct: 607 GNFNTNE 613


>gi|82750865|ref|YP_416606.1| DNA polymerase III PolC [Staphylococcus aureus RF122]
 gi|123549060|sp|Q2YXK4|DPO3_STAAB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|82656396|emb|CAI80815.1| DNA polymerase III [Staphylococcus aureus RF122]
          Length = 1438

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 100/167 (59%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ ++IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+ 
Sbjct: 423 VVFDVETTGLSNQYNKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL +
Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582


>gi|161507686|ref|YP_001577640.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348675|gb|ABX27349.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 1438

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S + + L  ITDE 
Sbjct: 422 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH-HPLSEQTINLTSITDEM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +        +  +F DF+ ++      HN +FDVGF+NA L+R     +    ++DTL +
Sbjct: 480 VSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEI-TQPVVDTLEV 536

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  +R+ L+SL K+Y +++ H  +
Sbjct: 537 SRLLHPEQNRHTLDSLAKKYNVSLEHHHR 565


>gi|323466335|gb|ADX70022.1| DNA polymerase subunit III [Lactobacillus helveticus H10]
          Length = 1436

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S + + L  ITDE 
Sbjct: 420 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH-HPLSEQTINLTSITDEM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +        +  +F DF+ ++      HN +FDVGF+NA L+R     +    ++DTL +
Sbjct: 478 VSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEIT-QPVVDTLEV 534

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  +R+ L+SL K+Y +++ H  +
Sbjct: 535 SRLLHPEQNRHTLDSLAKKYNVSLEHHHR 563


>gi|260101367|ref|ZP_05751604.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075]
 gi|260084819|gb|EEW68939.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075]
          Length = 1436

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S + + L  ITDE 
Sbjct: 420 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH-HPLSEQTINLTSITDEM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +        +  +F DF+ ++      HN +FDVGF+NA L+R     +    ++DTL +
Sbjct: 478 VSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEI-TQPVVDTLEV 534

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  +R+ L+SL K+Y +++ H  +
Sbjct: 535 SRLLHPEQNRHTLDSLAKKYNVSLEHHHR 563


>gi|325957051|ref|YP_004292463.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC]
 gi|325333616|gb|ADZ07524.1| DNA polymerase III, alpha subunit [Lactobacillus acidophilus 30SC]
 gi|327183774|gb|AEA32221.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL
           1118]
          Length = 1435

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S + + L  ITDE 
Sbjct: 419 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH-HPLSEQTINLTSITDEM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +        +  +F DF+ ++      HN +FDVGF+NA L+R     +    ++DTL +
Sbjct: 477 VSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEIT-QPVVDTLEV 533

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  +R+ L+SL K+Y +++ H  +
Sbjct: 534 SRLLHPEQNRHTLDSLAKKYNVSLEHHHR 562


>gi|315038577|ref|YP_004032145.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
 gi|312276710|gb|ADQ59350.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
          Length = 1435

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S + + L  ITDE 
Sbjct: 419 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH-HPLSEQTINLTSITDEM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +        +  +F DF+ ++      HN +FDVGF+NA L+R     +    ++DTL +
Sbjct: 477 VSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEIT-QPVVDTLEV 533

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  +R+ L+SL K+Y +++ H  +
Sbjct: 534 SRLLHPEQNRHTLDSLAKKYNVSLEHHHR 562


>gi|144897909|emb|CAM74773.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 677

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           IVFD ETTGL  S+ D+I++IGAV +++    +  +F   + P GR   PE++K HGITD
Sbjct: 485 IVFDTETTGLQPSQGDQIVQIGAVRIVNGRILSGESFNRIVNP-GRVIPPESIKFHGITD 543

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +KDKP    +  +F  F    +A  +AHNA FD+ F+    ++      +P  ++DT+
Sbjct: 544 DMVKDKPPLGVVLPQFKAF--AADAVLVAHNAAFDLKFLRMNERQFGLKFDNP--VLDTM 599

Query: 128 SIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            ++     P + + L+++C R GI+I+ R  H AL D+ + + V +
Sbjct: 600 MLSNYLDGPETGHSLDAICDRLGISITDR--HTALGDAIVTAAVLL 643


>gi|23099048|ref|NP_692514.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus
           iheyensis HTE831]
 gi|32469727|sp|Q8EQU6|DPO3_OCEIH RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|22777276|dbj|BAC13549.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus
           iheyensis HTE831]
          Length = 1428

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 90/161 (55%), Gaps = 8/161 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++      +R F+ F  P+    S   + L GITD+ 
Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKIKGGEIVDR-FESFANPH-HALSQTTIDLTGITDDM 472

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P  + +  +F  +    N   +AHNA FD+GF+N   QRI+ +    + ++DTL +
Sbjct: 473 VNDAPEVADVLKDFHTWMG--NDILVAHNASFDMGFLNQGFQRIDYEKAS-NPVVDTLEL 529

Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLL 167
           AR   P  RN  LN+LCK   I ++  HR+ + A    +LL
Sbjct: 530 ARFLLPELRNHRLNTLCKHLDIELTQHHRAIYDAEATGYLL 570


>gi|325282490|ref|YP_004255031.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP]
 gi|324314299|gb|ADY25414.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP]
          Length = 185

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 92/174 (52%), Gaps = 10/174 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSP-----EALKL 62
            +VFD+ETTGL  + D I+EIGA+ + D    T   +Q  + P             A ++
Sbjct: 11  AVVFDLETTGLSPERDGIVEIGALRIRDGRVVTEDPYQTLVRPQNSLGESVTIPWRAERI 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI++E +   PS + +  EF ++    +A  +AHN  FD GF+ A  +        P R
Sbjct: 71  HGISNEMVVAAPSIAQVLPEFLEWAG--DAPLVAHNIGFDSGFMRAAARHCGLR-WAPQR 127

Query: 123 IIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            I T+ ++RR  P   R++L+SL  R G++ S + +H +L D  + +  Y++++
Sbjct: 128 EICTVQLSRRAFPRERRHNLDSLAGRLGLSFSPQGRHRSLGDVEVTAAAYLRLL 181


>gi|150390440|ref|YP_001320489.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens
           QYMF]
 gi|149950302|gb|ABR48830.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens
           QYMF]
          Length = 1432

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 97/167 (58%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFDIETTGL ++NDRI EIGAV++ D S+    F   + P  +  S + ++L GITD+ 
Sbjct: 421 IVFDIETTGLSNRNDRITEIGAVKIKD-SQVIDKFSALVNPEMKIPS-KIVELTGITDDM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + DK +   I   F  F    ++  +AHN+ FD+GFI     RI +     +++IDTL +
Sbjct: 479 VVDKQTIDVILPGFLAFIG--SSPVVAHNSDFDMGFIRENANRIERTI--ENQVIDTLKL 534

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R   P   R+ LNS+ K   + +S  + H A+ D+   +++++K +
Sbjct: 535 SRILLPQLKRHRLNSIAKE--LNVSLENHHRAVDDAQATAEIFVKFI 579


>gi|159897533|ref|YP_001543780.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890572|gb|ABX03652.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 282

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 95/170 (55%), Gaps = 11/170 (6%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           ++FD+E+TGLD +   RI E+ A+ +      +R    FL    R+  P A  ++GI+ E
Sbjct: 27  VLFDMESTGLDVQIGHRICEMAAMRIQGREIIDRC--EFLVNPQREIDPAAFAVNGISAE 84

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + PSF  I+ +    F+E  A  +AHNA FD+GF+ +EL RI+  PL+ + +IDTL+
Sbjct: 85  MVANAPSFGEIWPKVNKLFHE--AVLVAHNAYFDIGFLTSELSRIDLPPLE-TPVIDTLA 141

Query: 129 IARRKHPSSRNDLNSLCKRYG-ITISHRSKHGAL----LDSHLLSDVYIK 173
           +ARR   + R +L SL    G    SHR+    +    +  HLL  +Y K
Sbjct: 142 LARRYITARRYNLTSLATNLGEKAPSHRAMSDVVALRPVFEHLLDILYRK 191


>gi|218295641|ref|ZP_03496437.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
 gi|218243800|gb|EED10327.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
          Length = 627

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ETTGLD + D II +GAV LL            L   GR     + ++HG+T E L
Sbjct: 445 AFDLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDPGRPIPKASTEVHGLTWEML 504

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KDKP    +   F  F   + +  +AHN  FD+ F       + K  +D   ++DTL +A
Sbjct: 505 KDKPKLEEVLPAFRAFL--EGSVLVAHNGAFDMAF-------LRKVGIDQPPLVDTLLLA 555

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               P  ++  L  L +R+G+ +  R  H AL D+ + ++VY +M+
Sbjct: 556 HLLFPDLKDHRLERLAERFGVPVLGR--HTALGDALMTAEVYARMI 599


>gi|158320555|ref|YP_001513062.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
 gi|158140754|gb|ABW19066.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
          Length = 1441

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 97/171 (56%), Gaps = 17/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEAL-KLHGITD 67
           I+FDIETTGL SKND I EIGA+++    K NR    F    N  ++ PE + +L GI+D
Sbjct: 427 IIFDIETTGLSSKNDEITEIGAIKI----KNNRIIDSFSTLINPERSIPEKIVELTGISD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIID 125
           + +KD+P+   +  +F DF    +   +AHN+ FD GFI   AE   ++ D +     ID
Sbjct: 483 DMVKDQPTIEVVLPQFLDFIG--DCPVVAHNSDFDTGFIRDKAERYELSFDNI----AID 536

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P   ++ LN + K   + IS  + H A+ D+   ++++IK +
Sbjct: 537 TLKLARALLPDLKKHRLNVIAKE--LNISLENHHRAVDDAKATAEIFIKFV 585


>gi|303233818|ref|ZP_07320472.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna BVS033A4]
 gi|302495252|gb|EFL55004.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna BVS033A4]
          Length = 1421

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 95/181 (52%), Gaps = 11/181 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTGL +  ++I EIGAV+++D    +   Q+    N     PE + +L  IT+E
Sbjct: 403 VVFDIETTGLSNATEKITEIGAVKIVDNKIVDEFNQLI---NPEIPIPEKITELTSITNE 459

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P   ++  EF  F    +   IAHNA FD+GFI      +  +P+     IDTL+
Sbjct: 460 MVKDMPKIDAVLPEFLKFVG--DCTLIAHNADFDMGFIKKNCIDLGINPV--RTYIDTLA 515

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            AR   P  +N  L++L K+Y + + +   H A  D+    +V+I M+    Q  F F  
Sbjct: 516 FARALEPHLKNHKLDTLTKKYNVNLFNH--HRACDDARATGEVFICMVNNLEQRGFKFDI 573

Query: 188 N 188
           N
Sbjct: 574 N 574


>gi|169824428|ref|YP_001692039.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328]
 gi|167831233|dbj|BAG08149.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328]
          Length = 1421

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 95/181 (52%), Gaps = 11/181 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTGL +  ++I EIGAV+++D    +   Q+    N     PE + +L  IT+E
Sbjct: 403 VVFDIETTGLSNATEKITEIGAVKIVDNKIVDEFNQLI---NPEIPIPEKITELTSITNE 459

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P   ++  EF  F    +   IAHNA FD+GFI      +  +P+     IDTL+
Sbjct: 460 MVKDMPKIDAVLPEFLKFVG--DCTLIAHNADFDMGFIKKNCIDLGINPV--RTYIDTLA 515

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            AR   P  +N  L++L K+Y + + +   H A  D+    +V+I M+    Q  F F  
Sbjct: 516 FARALEPHLKNHKLDTLTKKYNVNLFNH--HRACDDARATGEVFICMVNNLEQRGFKFDI 573

Query: 188 N 188
           N
Sbjct: 574 N 574


>gi|329769168|ref|ZP_08260588.1| DNA polymerase III [Gemella sanguinis M325]
 gi|328839387|gb|EGF88965.1| DNA polymerase III [Gemella sanguinis M325]
          Length = 1449

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 106/168 (63%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ DR+IEI AV++ + S+ + +F+ ++ P  R  S    +L  ITD+ 
Sbjct: 430 VVFDVETTGLSAERDRLIEIAAVKVKNGSEID-SFESYINPR-RPISELITRLTSITDDD 487

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +KD P    + + F+++ +E +   +AHNAKFD+GF++   +R+  K+  + S  IDTL 
Sbjct: 488 VKDAPFEEEVMTNFYNWLDEDDI-LVAHNAKFDLGFLDKSFERLGLKNKNNAS--IDTLF 544

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           I+R ++  + R+ L++L K Y + +     H A+ D+   +++++KM+
Sbjct: 545 ISRAENKEAKRHGLSNLAKLYKVRLVQH--HRAIYDTKATAEIFVKML 590


>gi|42782909|ref|NP_980156.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987]
 gi|42738836|gb|AAS42764.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus ATCC 10987]
          Length = 970

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPSRIID 125
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      K+P     +ID
Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+
Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578


>gi|261407941|ref|YP_003244182.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10]
 gi|261284404|gb|ACX66375.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10]
          Length = 1438

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 10/163 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTGL    ++IIE+ AV++ +  +  R +  F+ P+ R   P  + +L  I D+
Sbjct: 422 VVFDIETTGLSITANKIIELAAVKMHEGKEIGR-YATFVNPHER--IPYHIQQLTNINDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  EF +F    +   +AHNA+FD+GFI A L+    D L+ +  +DTL 
Sbjct: 479 MVKDAPELEPVLKEFVEFVG--DGVLVAHNARFDMGFIQAALKNAGMDTLE-NPYLDTLE 535

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +AR  HP  +N  LN+L  +Y + +   S H A+ D+  L+ +
Sbjct: 536 LARLVHPGLKNHRLNTLADKYKVLL--ESHHRAIDDTIALAGI 576


>gi|58337539|ref|YP_194124.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227904180|ref|ZP_04021985.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
 gi|58254856|gb|AAV43093.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227868199|gb|EEJ75620.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
          Length = 1437

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S + + L  ITDE 
Sbjct: 421 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH-HPLSEQTINLTSITDEM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +      + +  +F DF+ ++      HN +FDVGF+NA L+R     +    ++DTL +
Sbjct: 479 VSAADDEAIVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRNGFSEIT-QPVVDTLEV 535

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  +R+ L+SL K+Y +++ H  +
Sbjct: 536 SRLLHPEQNRHTLDSLAKKYNVSLEHHHR 564


>gi|329929349|ref|ZP_08283102.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Paenibacillus sp. HGF5]
 gi|328936718|gb|EGG33161.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Paenibacillus sp. HGF5]
          Length = 1438

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 10/163 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTGL    ++IIE+ AV++ +  +  R +  F+ P+ R   P  + +L  I D+
Sbjct: 422 VVFDIETTGLSITANKIIELAAVKMHEGKEIGR-YATFVNPHER--IPYHIQQLTNINDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  EF +F    +   +AHNA+FD+GFI A L+    D L+ +  +DTL 
Sbjct: 479 MVKDAPELEPVLKEFVEFVG--DGVLVAHNARFDMGFIQAALKNAGMDTLE-NPYLDTLE 535

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +AR  HP  +N  LN+L  +Y + +   S H A+ D+  L+ +
Sbjct: 536 LARLVHPGLKNHRLNTLADKYKVLL--ESHHRAIDDTIALAGI 576


>gi|295426318|ref|ZP_06818977.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664]
 gi|295063991|gb|EFG54940.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664]
          Length = 1435

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +  K    F  F+ P+    S + + L  ITDE 
Sbjct: 419 VIFDVETTGLSSVYDTIIEIGAVKMKN-GKVLERFDKFINPH-HPLSDQTINLTSITDEM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +        +  +F DF+ +       HN +FDVGF+NA L+R   + +    ++DTL +
Sbjct: 477 VGAADDEDVVIRQFKDFYGDM--PLCGHNVQFDVGFVNAALRRAGLEEIK-QPVVDTLEV 533

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  +R+ L+SL K+Y + + H  +
Sbjct: 534 SRLLHPEQTRHTLDSLVKKYDVVLEHHHR 562


>gi|94985918|ref|YP_605282.1| DNA polymerase III, epsilon subunit [Deinococcus geothermalis DSM
           11300]
 gi|94556199|gb|ABF46113.1| DNA polymerase III, epsilon subunit [Deinococcus geothermalis DSM
           11300]
          Length = 180

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 10/176 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSP-----EAL 60
           M  +VFD+ETTGL  + D I+EIGA+ ++D     +  F+  + P             A 
Sbjct: 1   MNVVVFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQ 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGI+D  ++D P    +  EF DF         AHN  FD  F+ A  +R       P
Sbjct: 61  RVHGISDAMVQDAPELGQVLPEFLDFVGRSAVA--AHNIGFDSSFMRAAARRCGLVWAPP 118

Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +    T+ ++RR  P  R ++L+ L +R G++ +   +H +L D  + ++ ++++M
Sbjct: 119 AEYC-TVQLSRRAFPRERTHNLDVLAQRLGLSFAPGGRHRSLGDVQVTAEAFVRLM 173


>gi|110799061|ref|YP_696378.1| DNA polymerase III PolC [Clostridium perfringens ATCC 13124]
 gi|168211421|ref|ZP_02637046.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens B str. ATCC 3626]
 gi|110673708|gb|ABG82695.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens ATCC 13124]
 gi|170710571|gb|EDT22753.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens B str. ATCC 3626]
          Length = 1449

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 94/169 (55%), Gaps = 11/169 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTG  SKND+IIEIGAV+L D  +   +F  F+ P  + N P  + +L  IT  
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKD-GEIVDSFSTFVDP--KVNIPYKITELTSITQN 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P+   +  +F +F    ++  +AHNA FDVGFI   L  + K   +P  ++DT+ 
Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--DSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548

Query: 129 IARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKM 174
           +AR  +P  +   LN + K  GI++   HR+   A   + +L   + KM
Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKM 597


>gi|169342745|ref|ZP_02863785.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens C str. JGS1495]
 gi|169299251|gb|EDS81321.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens C str. JGS1495]
          Length = 1449

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 94/169 (55%), Gaps = 11/169 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTG  SKND+IIEIGAV+L D  +   +F  F+ P  + N P  + +L  IT  
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKD-GEIVDSFSTFVDP--KVNIPYKITELTSITQN 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P+   +  +F +F    ++  +AHNA FDVGFI   L  + K   +P  ++DT+ 
Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--DSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548

Query: 129 IARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKM 174
           +AR  +P  +   LN + K  GI++   HR+   A   + +L   + KM
Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKM 597


>gi|229918664|ref|YP_002887310.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b]
 gi|229470093|gb|ACQ71865.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b]
          Length = 1430

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 8/161 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  ++IIE+  V++ D    +R F+ F  P     S   ++L GITD+ 
Sbjct: 411 VVFDVETTGLSAVYNKIIELAGVKIKDGEIIDR-FEAFADPK-HALSATTIELTGITDDM 468

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++ +P    I   F D+    ++  +AHNA FD+GF+ A L+    +P D   +IDTL +
Sbjct: 469 VQGQPDPEVITKRFVDWCG--DSILVAHNASFDMGFLEATLRSGGHEP-DDYPVIDTLEL 525

Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLL 167
           AR   P+ +N  LN+L KR+ I ++  HR+ + A   ++LL
Sbjct: 526 ARTLMPTLKNHRLNTLAKRFDIELTQHHRAIYDAEATAYLL 566


>gi|168208108|ref|ZP_02634113.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens E str. JGS1987]
 gi|170660599|gb|EDT13282.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens E str. JGS1987]
          Length = 1449

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 94/169 (55%), Gaps = 11/169 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTG  SKND+IIEIGAV+L D  +   +F  F+ P  + N P  + +L  IT  
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKD-GEIVDSFSTFVDP--KVNIPYKITELTSITQN 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P+   +  +F +F    ++  +AHNA FDVGFI   L  + K   +P  ++DT+ 
Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--DSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548

Query: 129 IARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKM 174
           +AR  +P  +   LN + K  GI++   HR+   A   + +L   + KM
Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKM 597


>gi|118479040|ref|YP_896191.1| DNA polymerase III, subunit alpha [Bacillus thuringiensis str. Al
           Hakam]
 gi|118418265|gb|ABK86684.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
           Hakam]
          Length = 972

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+ 
Sbjct: 421 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPSRIID 125
           L D P    +F +F ++  +     +AHNA FD+GFIN   ++      K+P     +ID
Sbjct: 479 LTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNP-----VID 531

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+
Sbjct: 532 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 580


>gi|168216978|ref|ZP_02642603.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens NCTC 8239]
 gi|182380934|gb|EDT78413.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens NCTC 8239]
          Length = 1449

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 94/169 (55%), Gaps = 11/169 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTG  SKND+IIEIGAV+L D  +   +F  F+ P  + N P  + +L  IT  
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKD-GEIVDSFSTFVDP--KVNIPYKITELTSITQN 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P+   +  +F +F    ++  +AHNA FDVGFI   L  + K   +P  ++DT+ 
Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--DSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548

Query: 129 IARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKM 174
           +AR  +P  +   LN + K  GI++   HR+   A   + +L   + KM
Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKM 597


>gi|297584076|ref|YP_003699856.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10]
 gi|297142533|gb|ADH99290.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10]
          Length = 1433

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 8/161 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + IIE+ AV++      +R F+ F  P+    SP  + L GITD+ 
Sbjct: 420 VVFDVETTGLSAVYNTIIELAAVKVQGGEIIDR-FESFANPH-EPLSPTIIDLTGITDDM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P    +  +F  +    N   +AHNA FD+ F++A  Q+   D    + +IDTL +
Sbjct: 478 VADAPEIHDVLKDFKAWCG--NDILVAHNAAFDMAFLDAGYQKAGMDKA-ANPVIDTLEM 534

Query: 130 ARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
            R  +P+ +N  LN+LCK++ I +   HR+ + A    HLL
Sbjct: 535 GRMLYPTFKNYRLNTLCKKFNIELVSHHRAIYDAEATGHLL 575


>gi|169350436|ref|ZP_02867374.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552]
 gi|169292756|gb|EDS74889.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552]
          Length = 1439

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 6/167 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL   +D I E GAV++ +    +R  Q F+ P G+  S     L  IT+E 
Sbjct: 403 VAFDLETTGLSVIHDGITEFGAVKIKNGEVIDR-MQKFINP-GKTISSRISSLTNITNEM 460

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K++P+   +  E  +FF +     +AHNA FDVGF+N  L+R N   +  + IID+L++
Sbjct: 461 VKNEPTIDKVLPEIMEFFGD--CILVAHNASFDVGFLNENLRRSNMSEIK-NPIIDSLAL 517

Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR    P     L ++C+ Y +       H A  D+ +L DV+  M+
Sbjct: 518 ARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAKVLGDVFNLMI 564


>gi|315651645|ref|ZP_07904656.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
 gi|315486099|gb|EFU76470.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
          Length = 1483

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 96/167 (57%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFDIETTG  +KND I EIGAV++++    +R F  F+ P  R       +L  I+D  
Sbjct: 460 IVFDIETTGFSAKNDAITEIGAVKVVNGEIVDR-FSTFVNPK-RPIPFRIEELTHISDAM 517

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P    I  +F DF   ++   +AHNA FD GFI    +RIN +  +PS IIDT+++
Sbjct: 518 VVNAPVIEEILPKFLDFC--EDYTIVAHNAGFDTGFIRENAKRINAE-YNPS-IIDTVAM 573

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +R  L+++CK   + IS    H A+ D+   ++++++ +
Sbjct: 574 ARLLLPDLNRFKLDTVCK--ALNISLEGHHRAVNDAEATAEIWVEFI 618


>gi|143342|gb|AAA22666.1| polymerase III [Bacillus subtilis]
          Length = 1437

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 95/167 (56%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+ R  S   ++L GITD+ 
Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+D P    +  +F     +     +AHNA FD+GF+N   +++ +     + +IDTL +
Sbjct: 480 LQDAPDVVDVIRDFRVRIGDDI--LVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLEL 537

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R  +P  +N  LN+LCK++ I ++    H A+ D+   + + +KM+
Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKML 582


>gi|259046785|ref|ZP_05737186.1| Gram-positive family DNA polymerase III, alpha chain
           [Granulicatella adiacens ATCC 49175]
 gi|259036553|gb|EEW37808.1| Gram-positive family DNA polymerase III, alpha chain
           [Granulicatella adiacens ATCC 49175]
          Length = 1444

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 11/178 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++ +    ++ F+ F+ P G   S   ++L GITD+ 
Sbjct: 428 VVFDVETTGLSAIYDSIIELAAVKMKNGVVIDK-FEEFIDP-GHPLSATTIQLTGITDDM 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +  EF +F   ++   +AHNA FD+GF+N   + +  +  +   +IDTL +
Sbjct: 486 VRGSKSVEQVLKEFHEF--SKDCILVAHNASFDMGFLNTGYENVGIERTE-QPVIDTLEL 542

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSH---LLSDVYIKMMVGGSQINF 183
           +R  HP  ++  LN+L KRY + +     H A+ DS     L  +++K      Q+ +
Sbjct: 543 SRMLHPQLKSHRLNTLAKRYNVALEQH--HRAVYDSETTGYLCHIFLKEAANDHQLLY 598


>gi|294500902|ref|YP_003564602.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551]
 gi|294350839|gb|ADE71168.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551]
          Length = 1436

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 96/162 (59%), Gaps = 8/162 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++ +    +R F+ F  P+    S   ++L GITD+ 
Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKMKEGEIIDR-FERFANPH-HPLSATTIELTGITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ P  S +  +F ++    ++  +AHNA FD+GF+N  LQ+I  +    + +IDTL +
Sbjct: 480 VQNAPEISEVLRDFHEWMG--DSILVAHNASFDMGFLNMGLQKIGLEKA-ANGVIDTLEL 536

Query: 130 ARRKHPSSRND-LNSLCKRYGITI--SHRSKHGALLDSHLLS 168
            R  +P  +N  LN+L K++ I +   HR+ + A    +LL+
Sbjct: 537 GRFLYPHMKNHRLNTLAKKFDIELVQHHRAIYDAETTGYLLN 578


>gi|299823038|ref|ZP_07054924.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
 gi|299816567|gb|EFI83805.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
          Length = 1470

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 94/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV+ ++  +   TF+ F+ P GR  S   + L GITD+ 
Sbjct: 455 VVFDVETTGLSAVYDTIIELAAVK-MENGQVVDTFESFIDP-GRPLSATIINLTGITDDM 512

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LK      ++   F ++    +A  +AHNA FD+GF+N    +   D  + + +IDTL +
Sbjct: 513 LKGSDDIETVLKRFKEWCG--DAVLVAHNASFDMGFLNTAYSKAGIDKAE-NAVIDTLEL 569

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR  +P  +N  LN+L K++ I +     H A+ D+   + +  K++
Sbjct: 570 ARFLYPHFKNHRLNTLTKKFNIVLEQH--HRAVFDAEATAYLAWKLI 614


>gi|257091883|ref|YP_003165524.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044407|gb|ACV33595.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 735

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 105/195 (53%), Gaps = 15/195 (7%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTG++ +  D II+IGAV +++     N  F   + P  R   PE +++HGI+D+
Sbjct: 547 VFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLVDPE-RFIRPEGIRIHGISDD 605

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ +P+   +     DF N  +   +AHNA FD+ F+  + +R       P  ++DTL 
Sbjct: 606 MVRGQPNIEVVLPALHDFCN--DTVLVAHNAAFDMRFLQLKEERTGVAFSQP--VLDTLL 661

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-----VGGSQIN 182
           ++   HP+  +  L+S+ +R GI I  R  H AL D+   ++V++KM+     +G + + 
Sbjct: 662 LSGVLHPNQESHQLDSIAERLGIGIEDR--HNALGDACATAEVFLKMLPLLAQMGITTLR 719

Query: 183 FGFKTNEDRFFKEEK 197
              + +E  +F   K
Sbjct: 720 QALEASEKTYFARVK 734


>gi|295706248|ref|YP_003599323.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319]
 gi|294803907|gb|ADF40973.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319]
          Length = 1436

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 96/162 (59%), Gaps = 8/162 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++ +    +R F+ F  P+    S   ++L GITD+ 
Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKMKEGEIIDR-FERFANPH-HPLSATTIELTGITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ P  S +  +F ++    ++  +AHNA FD+GF+N  LQ+I  +    + +IDTL +
Sbjct: 480 VQNAPEISEVLRDFHEWMG--DSILVAHNASFDMGFLNMGLQKIGLEKA-ANGVIDTLEL 536

Query: 130 ARRKHPSSRND-LNSLCKRYGITI--SHRSKHGALLDSHLLS 168
            R  +P  +N  LN+L K++ I +   HR+ + A    +LL+
Sbjct: 537 GRFLYPHMKNHRLNTLAKKFDIELVQHHRAIYDAETTGYLLN 578


>gi|260890306|ref|ZP_05901569.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
 gi|260859926|gb|EEX74426.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
          Length = 1151

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 92/168 (54%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG D  ND+IIEIGAV++         F  F+ P      P+  +L  ITDE 
Sbjct: 118 VVFDIETTGFDPFNDKIIEIGAVKMRGREIIGE-FSEFVNPE-IPIPPKITELTTITDEM 175

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTLS 128
           + +     ++   F +F  +     +AHNAKFDVGFI    Q+  +  L+ S  +IDTL 
Sbjct: 176 VANAEKIETVLPRFLEFCTDTTV--VAHNAKFDVGFIK---QKTIEQGLEYSPSVIDTLP 230

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   P SR   L +L K +GIT+   + H A+ D+   ++V+ K +
Sbjct: 231 LARTLLPDSRGYGLANLVKYFGITL--ETHHRAVDDAKATAEVFQKFL 276


>gi|331085480|ref|ZP_08334565.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330407718|gb|EGG87216.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 1492

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 91/170 (53%), Gaps = 15/170 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66
           +VFDIETTG  +  DRIIEIGAV++ D +  +R F  F+ P      P   E  +L  IT
Sbjct: 464 VVFDIETTGFSAAEDRIIEIGAVKITDGAIVDR-FSTFVNP----EVPIPFEIQQLTHIT 518

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ + + P        F DF  E  +  +AHNA FDVGFI     R+ +     S  +DT
Sbjct: 519 DDMVLEAPKIEEALPAFLDFVGE--SALVAHNAGFDVGFIEQNCVRLGRSRTFTS--VDT 574

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +AR   P+ S+  LN + K   + IS  + H A+ D+   +++Y+K +
Sbjct: 575 VGLARVLLPTLSKYKLNIVAK--ALNISLENHHRAVDDAAATAEIYVKFI 622


>gi|331090692|ref|ZP_08339541.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400106|gb|EGG79757.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 1487

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 15/170 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66
           +VFDIETTG  S  D+IIEIGAV++ +    +R +  F+ P      P   E  KL  IT
Sbjct: 453 VVFDIETTGFSSVKDKIIEIGAVKVENGKIVSR-YSTFVNP----EVPIPFEITKLTSIT 507

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P   ++  EF ++    +A  +AHNA FDVGFI    +R+  +    S  +DT
Sbjct: 508 DAMVIDAPKIETVLPEFMEYVG--DAVLVAHNAGFDVGFIEENCRRLGMERKLTS--VDT 563

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +++AR   P+ SR  LN + K  GI++ +   H A+ D+   +++++K +
Sbjct: 564 VALARVLLPTLSRYKLNIVAKTLGISLENH--HRAVDDAGATAEIFVKFV 611


>gi|331001986|ref|ZP_08325506.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411782|gb|EGG91187.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 1480

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 98/168 (58%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           IVFDIETTG  +KND I EIGAV+++     +R F  F+ P  R+  P  + +L  I+D 
Sbjct: 457 IVFDIETTGFSAKNDAITEIGAVKVVKGEIVDR-FSTFVNP--RRPIPFKIEELTHISDA 513

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P    I  +F DF   ++   +AHNA FD GFI    ++INK+  +PS IIDT++
Sbjct: 514 MVMNAPFIEDILPKFLDFC--EDYIIVAHNAGFDTGFIRENAKKINKE-YNPS-IIDTVA 569

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   P  +R  L+++CK   + IS    H A+ D+   + ++++ +
Sbjct: 570 MARLLLPELNRFKLDTVCK--ALNISLEGHHRAVNDAEATAQIWVEFI 615


>gi|325660790|ref|ZP_08149418.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325472864|gb|EGC76074.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 1492

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 91/170 (53%), Gaps = 15/170 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66
           +VFDIETTG  +  DRIIEIGAV++ D +  +R F  F+ P      P   E  +L  IT
Sbjct: 464 VVFDIETTGFSAAEDRIIEIGAVKITDGAIVDR-FSTFVNP----EVPIPFEIQQLTHIT 518

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ + + P        F DF  E  +  +AHNA FDVGFI     R+ +     S  +DT
Sbjct: 519 DDMVLEAPKIEEALPAFLDFVGE--SALVAHNAGFDVGFIEQNCVRLGRSRTFTS--VDT 574

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +AR   P+ S+  LN + K   + IS  + H A+ D+   +++Y+K +
Sbjct: 575 VGLARVLLPTLSKYKLNIVAK--ALNISLENHHRAVDDAAATAEIYVKFI 622


>gi|119387281|ref|YP_918315.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119377856|gb|ABL72619.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 659

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 6/175 (3%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R   +  +VFD ETTGLD   DRI++I  + +     T   F   + P GR   P +  +
Sbjct: 447 RLADLTCVVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDP-GRPIPPASTAV 505

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGITD  +   P  ++  + F  F   ++   +AHNA FD+GF+   +        D ++
Sbjct: 506 HGITDAMVAGAPDMTAALTAFHHF--AEDTVLVAHNAPFDMGFLRRAVPETGAH-FD-NQ 561

Query: 123 IIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++DT+ + A     S+ + L++L +R GI I   ++H A+ D+   ++ Y++++ 
Sbjct: 562 VLDTVLLSAMLWGQSAPHSLDALTERLGIVIPPEARHTAMGDARATAEAYLRLIA 616


>gi|253573562|ref|ZP_04850905.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251847090|gb|EES75095.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 1438

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 103/179 (57%), Gaps = 9/179 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL    ++IIEI AV++ +  + +R +  F+ P+ R       +L  I D+ 
Sbjct: 422 VVFDIETTGLSVTQNKIIEIAAVKMREGKEIDR-YATFVNPHERIPY-HIQQLTNINDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P    +   F +F   ++A  +AHNA+FD  F+NA+L+ +   P+  + ++DTL +
Sbjct: 480 VKDAPDVEPVLKRFVEF--AEDAILVAHNARFDYDFVNAKLKELGL-PIMENPVLDTLEL 536

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           AR   P+ +N  LN+L  +Y +++ +   H A+ D+  L ++   ++    +I  G+KT
Sbjct: 537 ARMLFPTMKNHRLNTLAAKYKVSLENH--HRAIDDTVALGEILNGLLDDAVKIE-GYKT 592


>gi|210622608|ref|ZP_03293268.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
 gi|210154109|gb|EEA85115.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
          Length = 1426

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 97/168 (57%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG  + ND+I EIGAV++ D+   +R F   + P  +  S    +L GIT+E 
Sbjct: 413 VVFDLETTGFSNINDKITEIGAVKIRDFEIVDR-FSELVNPE-KDISYRVQELTGITNEM 470

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLS 128
           +KDKP+   I  +F +F  +     +AHNA FD GFI   +Q+  +  L+  ++ +DTL 
Sbjct: 471 VKDKPTIEEILPKFMEFVGDDV--LVAHNADFDTGFI---MQKCKEQGLEYKNKKVDTLM 525

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   P+  R  L+ + K  G+ + +   H A+ D+   ++++IK +
Sbjct: 526 LARIMLPNLKRYKLDKVAKEVGVQLLNH--HRAVDDAEATANIFIKFL 571


>gi|153814386|ref|ZP_01967054.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
 gi|145848782|gb|EDK25700.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
          Length = 1459

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 9/165 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFDIETTG  S  D IIEIGAV++ D   T+R F  F+ P  R    E   L  ITDE 
Sbjct: 423 IVFDIETTGFSSIKDAIIEIGAVKVTDGKITDR-FSTFVNPK-RPIPFEITNLTSITDEM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +  +F +F    +   +AHNA FDVGFI    + +     D    +DT+++
Sbjct: 481 VMDSPTIDVVLPQFLEFAG--DGVLVAHNAGFDVGFIEQNCRSLGLS--DEFVYLDTVAL 536

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           AR   P+ S+  LN + K   + IS  + H A+ D+   +++++K
Sbjct: 537 ARVLLPTLSKYKLNIVAK--ALNISLENHHRAVDDAEATAEIFVK 579


>gi|291530449|emb|CBK96034.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium
           siraeum 70/3]
          Length = 1605

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 92/167 (55%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFDIETTGL   N+RI EIGAV+L +    +R F  F+ P     S    +L GITD+ 
Sbjct: 592 IVFDIETTGLHPANERITEIGAVKLRNMEIVDR-FSTFVNPMMPIPS-NITELTGITDDM 649

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+     S+F  F    N+   AHNAKFDV FI +   R+ K   +P  ++DTLSI
Sbjct: 650 VADAPTEDVAVSDFMAFCG--NSPVCAHNAKFDVSFIRSAATRMGKSFDNP--VVDTLSI 705

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+      +N  L+++ K +   +     H A+ D+ +L  +Y+ ++
Sbjct: 706 AKAALKGIKNYKLDTIAKYF--KLGDFDHHRAVADAEMLCMIYMHIV 750


>gi|326803581|ref|YP_004321399.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651581|gb|AEA01764.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 1437

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 87/156 (55%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL +  + IIEIGAV++   +     F  FL P G   S    +L GITD  
Sbjct: 422 VIFDVETTGLSAVYNTIIEIGAVKMHKGNVVGE-FSEFLNP-GHHLSSFTTELTGITDSM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + +      +  +F DF   Q    +AHNA FDVGFI+A  QR N  P   + +IDTL +
Sbjct: 480 VANARPEPEVMQDFLDFC--QGTILVAHNASFDVGFIDAAYQR-NGLPTIENPVIDTLEL 536

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           AR  +P  ++  LN+L K + +++ H   H A+ D+
Sbjct: 537 ARYLYPHLKSFRLNTLSKHFNVSLEHH--HRAIYDA 570


>gi|291557938|emb|CBL35055.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium
           siraeum V10Sc8a]
          Length = 1605

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 92/167 (55%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFDIETTGL   N+RI EIGAV+L +    +R F  F+ P     S    +L GITD+ 
Sbjct: 592 IVFDIETTGLHPANERITEIGAVKLRNMEIVDR-FSTFVNPMMPIPS-NITELTGITDDM 649

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+     S+F  F    N+   AHNAKFDV FI +   R+ K   +P  ++DTLSI
Sbjct: 650 VADAPTEDVAVSDFMAFCG--NSPVCAHNAKFDVSFIRSAAARMEKSFDNP--VVDTLSI 705

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+      +N  L+++ K +   +     H A+ D+ +L  +Y+ ++
Sbjct: 706 AKAALKGIKNYKLDTIAKYF--KLGDFDHHRAVADAEMLCMIYMHIV 750


>gi|213965283|ref|ZP_03393480.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
           SK46]
 gi|213952135|gb|EEB63520.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
           SK46]
          Length = 529

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 91/169 (53%), Gaps = 10/169 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL +KND IIEIGA++     KT  TF  F+ P G +       L GIT   
Sbjct: 24  VVVDLETTGLKAKNDHIIEIGAIKTRG-GKTIGTFSSFIDP-GMEIPDHITSLTGITTAD 81

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P   ++ ++F +F   + + W+AHNAKFD+GF+      +  D   PS ++DTL++
Sbjct: 82  VETAPQLGTVITQFLEF--ARGSVWVAHNAKFDIGFLRQACTDLGLDWPSPS-VVDTLTL 138

Query: 130 ARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR    S+     L+ L +  G    +R  H AL D+    DV   +M
Sbjct: 139 ARRVLDRSQVGSFKLSQLARYVG--SPNRPAHRALDDAIATVDVLHYLM 185


>gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 1410

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 97/165 (58%), Gaps = 9/165 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL S ND IIEIGAV++ D    + TF+ F+ P     S    KL GITD+ 
Sbjct: 400 VVFDIETTGLSSINDSIIEIGAVKIKDCQIVD-TFETFVNPQIHI-SNFITKLTGITDDM 457

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K  P    +  +F +F   + +  +AHNA FDV FI  + + +  +  +P  ++DTL +
Sbjct: 458 VKRYPPIDEVLPKFLEFI--KGSTLVAHNANFDVTFIKTKAKNLGIEVDNP--VLDTLEL 513

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +R  + + +N  L+++ +  G+++ +   H A+ D+   +++++K
Sbjct: 514 SRHMYENLKNYKLDTVAQHLGVSLENH--HRAVDDARATAEIFLK 556


>gi|56963998|ref|YP_175729.1| DNA polymerase III PolC [Bacillus clausii KSM-K16]
 gi|56910241|dbj|BAD64768.1| DNA polymerase III alpha subunit PolC [Bacillus clausii KSM-K16]
          Length = 1430

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 97/168 (57%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + IIE+ AV++ +  +   T++ F  P     S   ++L GITD+ 
Sbjct: 417 VVFDVETTGLSAVYNTIIELAAVKIKN-GEIIDTYESFADPK-EPLSATIIELTGITDDM 474

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           ++  P  + +  +F +F    NA  +AHNA FD+GF+N   +++   +  +P  +IDTL 
Sbjct: 475 VQGAPEPAEVLKQFREFAG--NATLVAHNASFDIGFLNVGYKKLGFSEVTNP--VIDTLE 530

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + R  +P  +N  LN+LCK++ I +   S H A+ D+   + +  KM+
Sbjct: 531 LGRFLYPELKNHRLNTLCKKFDIELV--SHHRAIYDTQATAYLLWKMV 576


>gi|42525158|ref|NP_970538.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
 gi|39577369|emb|CAE81192.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
          Length = 217

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 8/181 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR I FD+ETTG     D+I+EIGAV  +D  +    F   + P  R   P A  ++GI+
Sbjct: 13  MRFIAFDLETTGTVPGVDQIVEIGAVRFID-GQPEAIFATLIDPL-RPIPPGASAVNGIS 70

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +K KP   +I   F +F  E     +AHNA FD  F+ A++++ ++       I+D+
Sbjct: 71  DDMVKGKPLIDTILPAFAEFCGED--VLVAHNAPFDSQFLIADIKK-HETTAPRGVILDS 127

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           L IAR+  P   N  L +L +   I  S  HR++  A    H+ S +  ++ +GG     
Sbjct: 128 LPIARKVFPGLPNYKLGTLVQHLKIPTSNFHRAEEDATYLGHMFSQMMKRISIGGQAPQV 187

Query: 184 G 184
           G
Sbjct: 188 G 188


>gi|218510298|ref|ZP_03508176.1| DNA polymerase III subunit epsilon [Rhizobium etli Brasil 5]
          Length = 72

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 54/72 (75%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1  MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67 DEFLKDKPSFSS 78
          DEFLKDK +F+ 
Sbjct: 61 DEFLKDKKAFAE 72


>gi|317500099|ref|ZP_07958334.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898584|gb|EFV20620.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 1520

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 9/165 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFDIETTG  S  D IIE+GAV++ D   T+R F  F+ P  R    E   L  ITDE 
Sbjct: 484 IVFDIETTGFSSIKDAIIEVGAVKVTDGKITDR-FSTFVNPK-RPIPFEITNLTSITDEM 541

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +  +F +F    +   +AHNA FDVGFI    + +     D    +DT+++
Sbjct: 542 VMDSPTIDVVLPQFLEFAG--DGVLVAHNAGFDVGFIEQNCRSLGLS--DEFVYLDTVAL 597

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           AR   P+ S+  LN + K   + IS  + H A+ D+   +++++K
Sbjct: 598 ARVLLPTLSKYKLNIVAK--ALNISLENHHRAVDDAEATAEIFVK 640


>gi|15805882|ref|NP_294580.1| DNA polymerase III subunit epsilon [Deinococcus radiodurans R1]
 gi|6458571|gb|AAF10431.1|AE001939_8 DNA polymerase III, epsilon subunit, putative [Deinococcus
           radiodurans R1]
          Length = 197

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 94/174 (54%), Gaps = 12/174 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNS----P-EALKL 62
           +VFD+ETTG    +  I+EIGAV ++   + + T  F+  + P     S    P +A ++
Sbjct: 24  VVFDLETTGFSPASAAIVEIGAVRIVG-GQIDETLKFETLVRPTRPDGSLLSIPWQAQRV 82

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI+DE ++  P+   +  +F+DF +   +  +AHN  FD GF+ A  +R+      P R
Sbjct: 83  HGISDEMVRRAPAIKDVLPDFFDFVD--GSAVVAHNVSFDGGFMRAGAERLGLS-WAPER 139

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            + T+ ++RR  P  R ++L  L +R G+  +   +H +  D  + +  Y++++
Sbjct: 140 ELCTMQLSRRAFPRERTHNLTVLAERLGLEFAPGGRHRSYGDVQVTAQAYLRLL 193


>gi|223984468|ref|ZP_03634601.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
           12042]
 gi|223963539|gb|EEF67918.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
           12042]
          Length = 1451

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 6/167 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+ETTGL    D IIE GAV +++  +   T Q+F+ P    N+  + K + IT+E 
Sbjct: 400 VVYDLETTGLSCSFDHIIEFGAV-VIERGEIKETKQLFVKPPVPINAFISEKTN-ITNED 457

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +     F+ +  E  DF  ++    +AHNA FD  F+N EL+RI   PL  + ++DTL +
Sbjct: 458 VAQAKPFAEVAQELVDFIGDKV--LVAHNATFDYNFLNEELKRIGMAPLT-NPVVDTLDL 514

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR  H   R+  L ++ + Y IT      H A  D+ +L+ V++ M+
Sbjct: 515 ARALHSDRRSYRLGNIARHYRITYDEEVAHRADYDADVLASVFMLMI 561


>gi|295396947|ref|ZP_06807069.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
 gi|294974800|gb|EFG50505.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
          Length = 1439

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 105/185 (56%), Gaps = 11/185 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++ + +  + TF+ F+ P GR  S   + L GITD  
Sbjct: 424 VVFDVETTGLSAIYDNIIELAAVKMQNGNVID-TFEEFINP-GRPLSATIIDLTGITDAM 481

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L +  +   + S+F ++    +A ++AHNA FD+GFI+    R   +    + +IDTL +
Sbjct: 482 LANTRTEKEVISDFREWVG--DAIFVAHNASFDMGFIDTAYNRHGFEK-SHNAVIDTLEM 538

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSH---LLSDVYIKMMVGGSQINFGF 185
           +R  HP+ ++  LN+L KRY + +     H A+ D+     L+ ++IK      +I +  
Sbjct: 539 SRFLHPNLKSHRLNTLAKRYNVALEQH--HRAVYDAETTGALAWIFIKEAAADHEIFYHD 596

Query: 186 KTNED 190
           + N+D
Sbjct: 597 ELNKD 601


>gi|331087674|ref|ZP_08336601.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330410366|gb|EGG89799.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 1520

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 9/165 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFDIETTG  S  D IIE+GAV++ D   T+R F  F+ P  R    E   L  ITDE 
Sbjct: 484 IVFDIETTGFSSIKDAIIEVGAVKVTDGKITDR-FSTFVNPK-RPIPFEITNLTSITDEM 541

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +  +F +F    +   +AHNA FDVGFI    + +     D    +DT+++
Sbjct: 542 VMDSPTIDVVLPQFLEFAG--DGVLVAHNAGFDVGFIEQNCRSLGLS--DEFVYLDTVAL 597

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           AR   P+ S+  LN + K   + IS  + H A+ D+   +++++K
Sbjct: 598 ARVLLPTLSKYKLNIVAK--ALNISLENHHRAVDDAEATAEIFVK 640


>gi|289578391|ref|YP_003477018.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289528104|gb|ADD02456.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9]
          Length = 1406

 Score = 88.2 bits (217), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 96/166 (57%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTGL + ND IIEIGAV++ +  K   TF+ F+ P    +S    KL GI +  +
Sbjct: 395 VFDIETTGLSNINDEIIEIGAVKIKE-GKIIDTFETFVNPKIPISS-FITKLTGIDESMV 452

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD PS   I  +F +F    N+  +AHNA FDV FI ++ ++ N +    + ++DTL ++
Sbjct: 453 KDAPSIEEILPKFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLNV--NNTVLDTLELS 508

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R  +   +N  L++L +   + + H   H A+ D+   ++++IK +
Sbjct: 509 RHLYKDLKNYKLDTLAEHLQVKLEHH--HRAVDDARATAEIFIKTI 552


>gi|167464458|ref|ZP_02329547.1| DNA polymerase III PolC [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 686

 Score = 88.2 bits (217), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 92/162 (56%), Gaps = 8/162 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL   N++IIEI  V++ D  +  R +  F+ P+  K      +L  ITDE 
Sbjct: 422 VVFDIETTGLSVINNKIIEIAGVKMKDGKEIGR-YTTFIDPH-EKIPYNIQQLTNITDEM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P  +    +F +F    +A  +AHNA+FD+GFI A L+ I    L P+  +DTL +
Sbjct: 480 VQGAPDIAEELPKFVEFVG--DAVLVAHNARFDMGFIQANLKNIGMPEL-PNPSLDTLEL 536

Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLLS 168
           AR   PS +N  LN+L  ++ +++   HR+    +   H+L+
Sbjct: 537 ARLLFPSLKNHRLNTLADKFKVSLENHHRAIDDTVALMHILN 578


>gi|167750041|ref|ZP_02422168.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702]
 gi|167657062|gb|EDS01192.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702]
          Length = 1605

 Score = 88.2 bits (217), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 91/167 (54%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFDIETTGL   N+RI EIGAV+L +     R F  F+ P     S    +L GITD+ 
Sbjct: 592 IVFDIETTGLHPANERITEIGAVKLRNMEIVER-FSTFVNPMMPIPS-NITELTGITDDM 649

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+     S+F  F    N+   AHNAKFDV FI +   R+ K   +P  ++DTLSI
Sbjct: 650 VADAPTEDVAVSDFMAFCG--NSPVCAHNAKFDVSFIRSAAARMEKSFDNP--VVDTLSI 705

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+      +N  L+++ K +   +     H A+ D+ +L  +Y+ ++
Sbjct: 706 AKAALKGIKNYKLDTIAKYF--KLGDFDHHRAVADAEMLCMIYMHIV 750


>gi|256750786|ref|ZP_05491671.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750369|gb|EEU63388.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 1407

 Score = 88.2 bits (217), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 96/166 (57%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTGL + ND IIEIGAV++ +  K   TF+ F+ P    +S    KL GI +  +
Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKE-GKIIDTFETFVNPKIPISS-FITKLTGIDESMV 453

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD PS   I  +F +F    N+  +AHNA FDV FI ++ ++ N +    + ++DTL ++
Sbjct: 454 KDAPSIEEILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLDTLELS 509

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R  +   +N  L++L +   + + H   H A+ D+   ++++IK +
Sbjct: 510 RHLYKDLKNYKLDTLAEHLQVKLEHH--HRAVDDAMATAEIFIKTI 553


>gi|297544667|ref|YP_003676969.1| DNA polymerase III subunit alpha [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842442|gb|ADH60958.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 1406

 Score = 88.2 bits (217), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 96/166 (57%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTGL + ND IIEIGAV++ +  K   TF+ F+ P    +S    KL GI +  +
Sbjct: 395 VFDIETTGLSNINDEIIEIGAVKIKE-GKIIDTFETFVNPKIPISS-FITKLTGIDESMV 452

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD PS   I  +F +F    N+  +AHNA FDV FI ++ ++ N +    + ++DTL ++
Sbjct: 453 KDAPSIEEILPKFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLNV--NNTVLDTLELS 508

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R  +   +N  L++L +   + + H   H A+ D+   ++++IK +
Sbjct: 509 RHLYKDLKNYKLDTLAEHLQVKLEHH--HRAVDDARATAEIFIKTI 552


>gi|167040287|ref|YP_001663272.1| DNA polymerase III PolC [Thermoanaerobacter sp. X514]
 gi|300914371|ref|ZP_07131687.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307724393|ref|YP_003904144.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513]
 gi|166854527|gb|ABY92936.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514]
 gi|300889306|gb|EFK84452.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307581454|gb|ADN54853.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513]
          Length = 1407

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 96/166 (57%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTGL + ND IIEIGAV++ +  K   TF+ F+ P    +S    KL GI +  +
Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKE-GKIIDTFETFVNPKIPISS-FITKLTGIDESMV 453

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD PS   I  +F +F    N+  +AHNA FDV FI ++ ++ N +    + ++DTL ++
Sbjct: 454 KDAPSIEEILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLDTLELS 509

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R  +   +N  L++L +   + + H   H A+ D+   ++++IK +
Sbjct: 510 RHLYKDLKNYKLDTLAEHLQVKLEHH--HRAVDDAMATAEIFIKTI 553


>gi|237734614|ref|ZP_04565095.1| DNA-directed DNA polymerase [Mollicutes bacterium D7]
 gi|229382434|gb|EEO32525.1| DNA-directed DNA polymerase [Coprobacillus sp. D7]
          Length = 1440

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 6/167 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL   +D I E GAV++ +    +R  Q+F+ P G+  S     L  IT++ 
Sbjct: 404 VSFDLETTGLSVIHDGITEFGAVKIKNGEVIDR-LQMFVNP-GKSISSRITNLTSITNDM 461

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++++P+  ++     +FF++     +AHNA FD+GF+N  L+R N  P   + IID+L++
Sbjct: 462 VRNEPTIDALLPRIIEFFDD--CILVAHNANFDIGFLNENLRR-NNMPEITNPIIDSLAL 518

Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR    P     L ++C+ Y +       H A  D+ +L DV+  M+
Sbjct: 519 ARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAEVLGDVFNMML 565


>gi|325263721|ref|ZP_08130454.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. D5]
 gi|324030759|gb|EGB92041.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. D5]
          Length = 1498

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 96/168 (57%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTG  +  D+IIEIGAV++++    +R F  F+ P  R    +  +L  ITDE 
Sbjct: 462 IVFDLETTGFSAIKDKIIEIGAVKVVNGEIVDR-FSTFVNPK-RPIPFQITQLTSITDEM 519

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLS 128
           +   P   +I  +F +F   ++   +AHNA FDVGFI    Q      ++P  + +DT++
Sbjct: 520 VMGYPDIETILPQFLEF--AKDGVLVAHNAGFDVGFIE---QNCRYQDIEPHFVYVDTVA 574

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   P+ S+  LN + K  GI++ +   H A+ D+   S++++K +
Sbjct: 575 MARVLLPTLSKYKLNVVAKALGISLENH--HRAVDDAAATSEIFVKFV 620


>gi|299144044|ref|ZP_07037124.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518529|gb|EFI42268.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 1421

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 99/168 (58%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           +VFDIETTG   + D I EIGAV+++D    +R  Q+    N     P+  ++L GI+++
Sbjct: 407 VVFDIETTGFSPQVDEITEIGAVKIVDGVIVDRFSQLV---NPMIKIPDRVVELTGISND 463

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           F+KD+P+   +  +F DF   +N+  +AHNA FD+ FI  ++ + N        ++DTLS
Sbjct: 464 FVKDEPTIDKVIVDFNDFC--KNSVLVAHNAGFDISFIRRDMLKYNLSF--NFTVLDTLS 519

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR       R +L +L K+ G+++ +   H A+ D+   ++V+IKM+
Sbjct: 520 LARAIIKDIKRFNLTALSKKLGVSLVN--AHRAVNDAEATAEVFIKML 565


>gi|268319259|ref|YP_003292915.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785]
 gi|262397634|emb|CAX66648.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785]
          Length = 1432

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S   + L  ITDE 
Sbjct: 416 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH-HPLSDTTINLTSITDEM 473

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +        +  +F +F+ ++      HN +FDVGF+NA L+R   + +    ++DTL +
Sbjct: 474 VGAADDEKDVIKKFKEFYGDR--PLCGHNVQFDVGFVNAALRRAGLEEIT-QPVVDTLEV 530

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  +R+ L+SL K+Y + + H  +
Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEHHHR 559


>gi|288574409|ref|ZP_06392766.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570150|gb|EFC91707.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 193

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 7/163 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTGL ++ DRI+EIGA+     S+T  +FQ F+ P GR    EA+ +HGITDE 
Sbjct: 11  VAIDVETTGLSNRWDRIVEIGAIRFTPGSET-ESFQTFVSP-GRPIPSEAVAIHGITDEM 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P  S        F  ++    + HN  FD+GF++A ++ I K   +   + DT  +
Sbjct: 69  VEGAPGLSEASIALASFLKDEE-PMVFHNPSFDLGFLDANMRAI-KGSWNVMPVFDTCGL 126

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           AR+  P  +   L +L + +G  +S    H AL D    + ++
Sbjct: 127 ARKAFPGIKGYSLVALARHFG--LSGGGHHRALEDCRYSASLF 167


>gi|167756906|ref|ZP_02429033.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402]
 gi|167703081|gb|EDS17660.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402]
          Length = 1445

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 6/167 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL   +D I E GAV++ +    +R  Q+F+ P G+  S     L  IT++ 
Sbjct: 409 VSFDLETTGLSVIHDGITEFGAVKIKNGEVIDR-LQMFVNP-GKSISSRITNLTSITNDM 466

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++++P+  ++     +FF++     +AHNA FD+GF+N  L+R N  P   + IID+L++
Sbjct: 467 VRNEPTIDALLPRIIEFFDD--CILVAHNANFDIGFLNENLRR-NNMPEITNPIIDSLAL 523

Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR    P     L ++C+ Y +       H A  D+ +L DV+  M+
Sbjct: 524 ARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAEVLGDVFNMML 570


>gi|42519364|ref|NP_965294.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
 gi|41583652|gb|AAS09260.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
          Length = 1432

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S   + L  ITDE 
Sbjct: 416 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH-HPLSDTTINLTSITDEM 473

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +        +  +F +F+ ++      HN +FDVGF+NA L+R   + +    ++DTL +
Sbjct: 474 VGAADDEKDVIKKFKEFYGDR--PLCGHNVQFDVGFVNAALRRAGLEEIT-QPVVDTLEV 530

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  +R+ L+SL K+Y + + H  +
Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEHHHR 559


>gi|319649525|ref|ZP_08003681.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
 gi|317398687|gb|EFV79369.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
          Length = 1441

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 95/167 (56%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++ D    +R F+ F  P+    S   + L GITD+ 
Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKIHDGEIIDR-FESFANPH-HPLSATTINLTGITDDL 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ P    +  +F ++    +A  +AHNA FD+GF+N   +++       + +IDTL +
Sbjct: 485 VENAPEVEEVLKKFHEWAG--DAVLVAHNASFDMGFLNVGYKKMGIGKAS-NPVIDTLEL 541

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR  +P  +N  LN+L K++ + ++    H A+ D+     + +KM+
Sbjct: 542 ARFLYPDMKNHRLNTLAKKFDVELTQH--HRAIYDAEATGYLLLKML 586


>gi|227890229|ref|ZP_04008034.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849231|gb|EEJ59317.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 1432

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S   + L  ITDE 
Sbjct: 416 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH-HPLSDTTINLTSITDEM 473

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +        +  +F +F+ ++      HN +FDVGF+NA L+R   + +    ++DTL +
Sbjct: 474 VGAADDEKDVIKKFKEFYGDR--PLCGHNVQFDVGFVNAALRRAGLEEIT-QPVVDTLEV 530

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  +R+ L+SL K+Y + + H  +
Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEHHHR 559


>gi|322382351|ref|ZP_08056258.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153704|gb|EFX46079.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 1437

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 95/170 (55%), Gaps = 8/170 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I+  +   +VFDIETTGL   N++IIEI  V++ D  +  R +  F+ P+  K      +
Sbjct: 416 IKLKEATYVVFDIETTGLSVINNKIIEIAGVKMKDGKEIGR-YTTFIDPH-EKIPYNIQQ 473

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE ++  P  +    +F +F    +A  +AHNA+FD+GFI A L+ I    L P+
Sbjct: 474 LTNITDEMVQGAPDIAEELPKFVEFVG--DAVLVAHNARFDMGFIQANLKNIGMPEL-PN 530

Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLLS 168
             +DTL +AR   PS +N  LN+L  ++ +++   HR+    +   H+L+
Sbjct: 531 PSLDTLELARLLFPSLKNHRLNTLADKFKVSLENHHRAIDDTVALMHILN 580


>gi|149183493|ref|ZP_01861922.1| DNA polymerase III PolC [Bacillus sp. SG-1]
 gi|148848805|gb|EDL63026.1| DNA polymerase III PolC [Bacillus sp. SG-1]
          Length = 1375

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + IIE+ AV++ D    +R F+ F  P+    S   + L GITD+ 
Sbjct: 426 VVFDVETTGLSAMYNTIIELAAVKIRDGEIIDR-FESFANPH-HPLSATTINLTGITDDM 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P  +     F D+    +A  +AHNA FD+GF+N    +   D  + + +IDTL +
Sbjct: 484 VEGAPEVAEALKAFKDWAG--DAVLVAHNASFDMGFLNVGYGKAGLDKAE-NPVIDTLEL 540

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR  +P  +N  LN+L K++ + ++    H A+ D+     + +KM+
Sbjct: 541 ARLLYPEMKNHRLNTLAKKFDVELTQH--HRAIYDAEATGYLLLKML 585


>gi|310658999|ref|YP_003936720.1| DNA polymerase III polc [Clostridium sticklandii DSM 519]
 gi|308825777|emb|CBH21815.1| DNA polymerase III PolC [Clostridium sticklandii]
          Length = 1417

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 124/230 (53%), Gaps = 34/230 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK---LHGIT 66
           +VFDIETTG  + +D I EIGAV++ +    + +F   + P    + P  LK   L GIT
Sbjct: 407 VVFDIETTGFSNTSDEITEIGAVKIRNKEIID-SFGELINP----HMPIPLKVQELTGIT 461

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-----NKDPLDPS 121
           ++ +KDKPS   +   F +F    ++  +AHN+ FD+GFI A+ +R+     NKD     
Sbjct: 462 NDLIKDKPSIDEVLPRFLEFVG--SSILVAHNSDFDMGFIRAKAKRLNLAFENKD----- 514

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGG 178
             IDTL ++R   P+  R+ LN +    GI++ +   H A+ D+   + V+IK   M+  
Sbjct: 515 --IDTLKLSRILLPNLKRHKLNLITNHLGISLENH--HRAVDDAKATALVFIKFMEMLID 570

Query: 179 SQINFGFKTNEDRFFKEEKKTVPN--ISLLKRD----KPLFTRITKEELD 222
             IN  F+   D+  K + K++P+  I+++ RD    K L+  I+   +D
Sbjct: 571 KDIN-TFEMVNDKLGKLDYKSIPSNHITIIARDYTGLKNLYKLISASHID 619


>gi|116492651|ref|YP_804386.1| DNA polymerase III PolC [Pediococcus pentosaceus ATCC 25745]
 gi|122265885|sp|Q03FS8|DPO3_PEDPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116102801|gb|ABJ67944.1| DNA polymerase III catalytic subunit, PolC type [Pediococcus
           pentosaceus ATCC 25745]
          Length = 1437

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 96/158 (60%), Gaps = 8/158 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++FD+ETTGL +  D++IE+ AV++ + +  ++ F+ F+ P G   S   + L  ITD
Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDQ-FEEFIDP-GFPLSETTINLTSITD 476

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +F++F +F+  ++A  + HN  FD+GF+N    R   + +  + IIDTL
Sbjct: 477 EMVRGSMSEKEVFTKFREFY--EDAIIVGHNVTFDIGFMNTGYLRHGMEEIK-NPIIDTL 533

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           ++AR  +P+ +   LN+L K++G+ + H   H A+ DS
Sbjct: 534 TLARFLYPTLKGYRLNTLAKKFGVALEHH--HRAIYDS 569


>gi|254479461|ref|ZP_05092788.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034604|gb|EEB75351.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carboxydibrachium pacificum DSM 12653]
          Length = 1375

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 97/167 (58%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL + ND IIEIGAV++ +  K   TF+ F+ P    +S    KL GI +  
Sbjct: 389 VVFDIETTGLSNINDEIIEIGAVKIKN-KKIVDTFETFVNPQIPISS-FITKLTGIDESM 446

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P    +  +F +F   + A  +AHNA FDV FI ++ +++       + ++DTL +
Sbjct: 447 VKDAPLIEEVLPKFLEF--AKGAVLVAHNANFDVSFIKSKAKKLGLTV--ENTVLDTLEL 502

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +   +N  L++L + + + + H   H A+ D+   ++++IKM+
Sbjct: 503 SRHLYQDLKNYKLDTLAEFFEVKLLHH--HRAVEDAKATAEIFIKML 547


>gi|312865553|ref|ZP_07725780.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus downei F0415]
 gi|311099071|gb|EFQ57288.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus downei F0415]
          Length = 1468

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 81/146 (55%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +  ++ F  F+ P G   S     L GITD  
Sbjct: 431 VVFDVETTGLSAVNNSLIQIAASKMHKGNIIDQ-FDEFINP-GHPLSQFTTDLTGITDNH 488

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LKD      +  EF +F   Q+   +AHNA FDVGF+NA  +R +  PL    +IDTL  
Sbjct: 489 LKDAKPLLQVLEEFQEFC--QDTVLVAHNATFDVGFMNANYER-HDLPLISQPVIDTLEF 545

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ + + H
Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALDH 571


>gi|20807845|ref|NP_623016.1| DNA polymerase III PolC [Thermoanaerobacter tengcongensis MB4]
 gi|24418364|sp|Q8RA32|DPO3_THETN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|20516408|gb|AAM24620.1| DNA polymerase III alpha subunit, the Gram-positive type
           [Thermoanaerobacter tengcongensis MB4]
          Length = 1401

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 97/167 (58%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL + ND IIEIGAV++ +  K   TF+ F+ P    +S    KL GI +  
Sbjct: 389 VVFDIETTGLSNINDEIIEIGAVKIKN-KKIVDTFETFVNPQIPISS-FITKLTGIDESM 446

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P    +  +F +F   + A  +AHNA FDV FI ++ +++       + ++DTL +
Sbjct: 447 VKDAPLIEEVLPKFLEF--AKGAVLVAHNANFDVSFIKSKAKKLGLTV--ENTVLDTLEL 502

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +   +N  L++L + + + + H   H A+ D+   ++++IKM+
Sbjct: 503 SRHLYQDLKNYKLDTLAEFFEVKLLHH--HRAVEDAKATAEIFIKML 547


>gi|332686699|ref|YP_004456473.1| DNA polymerase III subunit alpha [Melissococcus plutonius ATCC
           35311]
 gi|332370708|dbj|BAK21664.1| DNA polymerase III alpha subunit [Melissococcus plutonius ATCC
           35311]
          Length = 1450

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 90/156 (57%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++   +  + TF+ F+ P G   S   + L GIT+E 
Sbjct: 426 VVFDVETTGLSAVYDTIIELSAVKMHKGNVID-TFEQFINP-GHPLSQTTIHLTGITNEM 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D  S   + + F  F   +N   +AHNA FD+GF+N   ++  K P   + +IDTL +
Sbjct: 484 VSDAKSEKVVLNMFKKF--SENTILVAHNAAFDMGFLNTSYRKY-KIPEAENPVIDTLEL 540

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           AR  +P+ ++  LN L K++G+ +     H A+ DS
Sbjct: 541 ARYLYPTLKSHRLNVLAKKFGVGLEQH--HRAIYDS 574


>gi|332298225|ref|YP_004440147.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM
           12168]
 gi|332181328|gb|AEE17016.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM
           12168]
          Length = 186

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 94/169 (55%), Gaps = 8/169 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTGL  + +R+IEIGA+   D +     + + + P G+   P A  ++ ITD+ +
Sbjct: 25  AFDTETTGLKPEYERLIEIGAIRF-DKNGIIARYDILINP-GKPIPPGASAINNITDDMV 82

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ P   S+  +F  F   +++  +AHNA FD+ F+N EL+R   +PL  +   DT+ +A
Sbjct: 83  RNCPLIESVLPDFLTFV--RDSVLVAHNAGFDLSFVNKELERSGFNPLK-NNAADTVHLA 139

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           R + P   N  L SL   +GI +  R+ H A  D+ +  +V+++ +  G
Sbjct: 140 RSRFPQLPNHKLQSLAAYFGIDV--RNAHRAEDDARVCMEVFLRCLNAG 186


>gi|307264910|ref|ZP_07546472.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920168|gb|EFN50380.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 1407

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTGL + ND IIEIGAV++ +  K   TF+ F+ P    +S    KL GI +  +
Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKE-GKIIDTFETFVNPKIPISS-FITKLTGIDESIV 453

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD PS   I   F +F    N+  +AHNA FDV FI ++ ++ N +    + ++DTL ++
Sbjct: 454 KDAPSIEEILPNFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLDTLELS 509

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R  +   +N  L++L +   + + H   H A+ D+   ++++IK +
Sbjct: 510 RHLYKDLKNYKLDTLSEHLQVKLEHH--HRAVDDARATAEIFIKTI 553


>gi|326389440|ref|ZP_08211007.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994445|gb|EGD52870.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 1407

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTGL + ND IIEIGAV++ +  K   TF+ F+ P    +S    KL GI +  +
Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKE-GKIIDTFETFVNPKIPISS-FITKLTGIDESMV 453

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD PS   I  +F +F    N+  +AHNA FDV FI ++ ++ N +    + ++DTL ++
Sbjct: 454 KDAPSIEEILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLDTLELS 509

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R  +   +N  L++L     + + H   H A+ D+   ++++IK +
Sbjct: 510 RHLYKDLKNYKLDTLADHLQVKLEHH--HRAVDDAMATAEIFIKTI 553


>gi|167037626|ref|YP_001665204.1| DNA polymerase III PolC [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320116041|ref|YP_004186200.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856460|gb|ABY94868.1| DNA polymerase III, alpha subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929132|gb|ADV79817.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 1407

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTGL + ND IIEIGAV++ +  K   TF+ F+ P    +S    KL GI +  +
Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKE-GKIIDTFETFVNPKIPISS-FITKLTGIDESMV 453

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD PS   I  +F +F    N+  +AHNA FDV FI ++ ++ N +    + ++DTL ++
Sbjct: 454 KDAPSIEEILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLDTLELS 509

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R  +   +N  L++L     + + H   H A+ D+   ++++IK +
Sbjct: 510 RHLYKDLKNYKLDTLADHLQVKLEHH--HRAVDDAMATAEIFIKTI 553


>gi|149201054|ref|ZP_01878029.1| putative exonuclease [Roseovarius sp. TM1035]
 gi|149145387|gb|EDM33413.1| putative exonuclease [Roseovarius sp. TM1035]
          Length = 688

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 6/168 (3%)

Query: 10  IVFDIETTGLDSKN-DRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD ETTGL  +  D I++I  + +++       +F + + P GR   P + ++H I+D
Sbjct: 495 VVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLVNP-GRPIPPASTRVHHISD 553

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++D P        F DF   Q A  +AHNA FD+ F+  + + I +   +P      +
Sbjct: 554 DMVQDAPDIIEAGRRFHDFC--QGAVLVAHNAPFDLAFLRLKEKVIGRRFDNPVLCTVLM 611

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           S     H S ++ L++LC+R+GITI   ++H A+ D+   ++V+++M+
Sbjct: 612 SAGLFDH-SGQHTLDALCERFGITIPPEARHTAMGDTVATAEVFVRML 658


>gi|329667117|gb|AEB93065.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii DPC 6026]
          Length = 1432

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S   + L  ITDE 
Sbjct: 416 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH-HPLSDTTINLTSITDEM 473

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +        +  +F +F+ ++      HN +FDVGF+NA L+R   + +    ++DTL +
Sbjct: 474 VGVADDEKDVIKKFKEFYGDR--PLCGHNVQFDVGFVNAALRRAGLEEIT-QPVVDTLEV 530

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157
           +R  HP  +R+ L+SL K+Y + + H  +
Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEHHHR 559


>gi|297588407|ref|ZP_06947050.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
 gi|297573780|gb|EFH92501.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
          Length = 1421

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTGL +  ++I EIGAV+++D    +   Q+    N     PE + +L  IT+E
Sbjct: 403 VVFDIETTGLSNATEKITEIGAVKIVDNQIVDEFNQLI---NPEIPIPEKITELTSITNE 459

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  EF  F    +   IAHNA FD+GFI      +  +P+     IDTL+
Sbjct: 460 MVKDMPKIEEVLPEFLKFVG--DCTLIAHNADFDMGFIKKNCLDLRINPI--RTYIDTLA 515

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            AR   P  +N  L++L K+Y + + +   H A  D+    +V+I M+
Sbjct: 516 FARALEPHLKNHKLDTLTKKYNVNLFNH--HRACDDARATGEVFICMV 561


>gi|170761721|ref|YP_001787734.1| DNA polymerase III PolC [Clostridium botulinum A3 str. Loch Maree]
 gi|169408710|gb|ACA57121.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 1432

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 9/165 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG  +KND+IIEIGAV+ ++  K    F  F+ P GR    +  +L  ITD+ 
Sbjct: 419 VVFDLETTGFSNKNDKIIEIGAVK-IEKGKIVDRFSEFVNP-GRSIPDKITELTSITDDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++DK +   I   F DF    ++  +AHNA FDV FIN   + +  +    + ++DT+++
Sbjct: 477 VQDKETIDKILPRFIDFIG--DSVVVAHNAAFDVSFINKNCKDLKIEF--ENSVMDTVTL 532

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +R   P   R  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 533 SRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575


>gi|15835437|ref|NP_297196.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
 gi|270285617|ref|ZP_06195011.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
 gi|270289627|ref|ZP_06195929.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss]
 gi|301337013|ref|ZP_07225215.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14]
 gi|8163328|gb|AAF73606.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum
           Nigg]
          Length = 250

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 6/163 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGLD K DR+IE  A+    + +   + +  + P  R  S E+ K+H I+D  
Sbjct: 10  VCLDCETTGLDVKKDRVIEFAAIRF-TFDEVIDSVEFLIHPE-RAVSAESQKIHKISDAM 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128
           LKDKP FS +FS    FF E++   + H+  FD+  ++ E +R+ +  L     +IDTL 
Sbjct: 68  LKDKPKFSEVFSTIKGFFKERDY-IVGHHVGFDLQVLSQESERLGETLLPKQHYVIDTLR 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +A+    S  N L +L + +   + H+  H A+ D  +   V+
Sbjct: 127 LAKEYGDSPNNSLEALARHF--NVPHQGNHRAMKDVEMNVKVF 167


>gi|302380708|ref|ZP_07269173.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna ACS-171-V-Col3]
 gi|302311651|gb|EFK93667.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna ACS-171-V-Col3]
          Length = 1421

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 94/181 (51%), Gaps = 11/181 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTGL +  ++I EIGAV+++D    +   Q+    N     PE + +L  IT+E
Sbjct: 403 VVFDIETTGLSNATEKITEIGAVKIVDNKIVDEFNQLI---NPEIPIPEKITELTSITNE 459

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P   ++  EF  F    +   IAHNA FD+GFI      +  +P+     IDTL+
Sbjct: 460 MVKDMPKIDAVLPEFLKFVG--DCTLIAHNADFDMGFIKKNCIDLGINPV--RTYIDTLA 515

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            AR      +N  L++L K+Y + + +   H A  D+    +V+I M+    Q  F F  
Sbjct: 516 FARALESHLKNHKLDTLTKKYNVNLFNH--HRACDDARATGEVFICMVNNLEQRGFKFDI 573

Query: 188 N 188
           N
Sbjct: 574 N 574


>gi|288904428|ref|YP_003429649.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus
           UCN34]
 gi|306830461|ref|ZP_07463631.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977425|ref|YP_004287141.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288731153|emb|CBI12701.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus
           UCN34]
 gi|304427486|gb|EFM30588.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177353|emb|CBZ47397.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 1464

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 6/154 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  N+   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 419 IELNEATYVVFDVETTGLSAVNNELIQIAASKMYKGNIVEQ-FDEFINP-GHHLSAFTTE 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +++      +   F DF   Q+   +AHNA FDVGF+NA  +R +  P+   
Sbjct: 477 LTGITDNHVRNAKPIEEVLQMFQDFC--QDTVLVAHNATFDVGFMNANYER-HGMPIITQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISH 154
            +IDTL  AR  +P   R+ L  L KR+ +++ H
Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEH 567


>gi|307690728|ref|ZP_07633174.1| DNA polymerase III PolC [Clostridium cellulovorans 743B]
          Length = 1439

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 96/166 (57%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           +VFDIETTG  S+NDRIIEIGAV++ +    +  F VF+ P  +K+ P E  +L GI + 
Sbjct: 427 VVFDIETTGFSSQNDRIIEIGAVKVKNGEIIDE-FSVFVNP--QKDIPLEITELTGIDNY 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD  +   +  EF+DF +   +  +AHNA FD  FI      ++ D      I+DT+ 
Sbjct: 484 MVKDAKTIDIVIKEFYDFVD--GSILVAHNAAFDTSFIKK--NYLDNDLEFNYPIMDTIP 539

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + +  +P+ ++  LN +CK  GIT+ +   H A+ D+   + V++K
Sbjct: 540 LCKYLYPALNKYKLNVICKYLGITLLNH--HRAVDDAKATAMVFLK 583


>gi|224540943|ref|ZP_03681482.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526094|gb|EEF95199.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM
           15897]
          Length = 1444

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 8/187 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++ N +  + FD+ETTGL   +D I EIGAV++ +  +  R  Q F+  + +  S +  +
Sbjct: 397 LKLNDLTYVSFDLETTGLSQIDDYITEIGAVKIKNGLEVGR-LQTFI-KSPKPISKKITE 454

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  IT+E +++ P+         +FF +     IAHN +FD+G ++  L+R+ K P+  +
Sbjct: 455 LTSITNEDIRNAPTIEEFMPRLMEFFGDD--LLIAHNGRFDIGMLDKALERMGKSPIS-N 511

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             IDTL ++RR  P  R+  L ++C+ Y I     + H A  D+ +LS  +  M+     
Sbjct: 512 PWIDTLPLSRRLIPLQRSYRLGAVCRFYHIPYDTEAAHRADYDAEVLSHSFNVML--QDL 569

Query: 181 INFGFKT 187
           I  GFKT
Sbjct: 570 IKKGFKT 576


>gi|304439997|ref|ZP_07399890.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371489|gb|EFM25102.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 1403

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 101/176 (57%), Gaps = 10/176 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIE+TGL   +D I EIGAV++ D    +R F  F+ P  R    + ++L  IT+E 
Sbjct: 394 VVFDIESTGLSPASDMITEIGAVKIEDGVIVDR-FSRFVNPM-RPIPEKVVELTRITNEM 451

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P    +  +F +F    +A  +AHNA+FD  FI  ++ ++      P  ++DTL +
Sbjct: 452 VANEPPIEVVIKDFVEFIG--DATLVAHNAEFDTAFIRRDMDKVGLKFDFP--VLDTLYL 507

Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINF 183
           +R   +   R +L+++CK+ G+ +     H A+ D+   ++ +IKMM +GGS  +F
Sbjct: 508 SRAILNDLKRFNLSAICKKLGVNL--EGAHRAVNDAEATAEAFIKMMKLGGSPKSF 561


>gi|224476387|ref|YP_002633993.1| DNA polymerase III PolC [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420994|emb|CAL27808.1| homolog of DNA polymerase III, alpha subunit [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 1437

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 97/167 (58%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  P+ R  S     L  I+D+ 
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHDGEIIDK-FERFSNPHERL-SDTIKNLTHISDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    + +EF ++    +A ++AHNA FD+GFI+   +R        + +IDTL +
Sbjct: 481 LVDAPEIDDVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERAGLGNY-TNGVIDTLEL 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 538 SRTINTEFGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKML 582


>gi|281202348|gb|EFA76553.1| DNA polymerase III [Polysphondylium pallidum PN500]
          Length = 725

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 95/170 (55%), Gaps = 7/170 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FD+ET+G    +D IIEIGAVEL++  +T  TFQ +  P  + + P A ++H +++
Sbjct: 320 RVVCFDLETSGF-GPDDSIIEIGAVELINGCRTGLTFQSYAKPKTQIH-PAAEQIHQLSN 377

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDT 126
             L+D P    + S F DF  +  +  +AHN  FD   +  EL R +K P D + +   T
Sbjct: 378 FLLQDAPPIEFVLSSFMDFVGD--SILVAHNLAFDRRMLIQELVR-SKTPFDINHKCFCT 434

Query: 127 LSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMM 175
           +   R+ +  S   L+S+ ++  I  +  R  HGAL+DS +L+ VY  ++
Sbjct: 435 MRYFRKMYKDSNYSLDSISQQLKINKLLLRRTHGALVDSEILAIVYKHLL 484


>gi|302874658|ref|YP_003843291.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
 gi|302577515|gb|ADL51527.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
          Length = 1443

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 96/166 (57%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           +VFDIETTG  S+NDRIIEIGAV++ +    +  F VF+ P  +K+ P E  +L GI + 
Sbjct: 431 VVFDIETTGFSSQNDRIIEIGAVKVKNGEIIDE-FSVFVNP--QKDIPLEITELTGIDNY 487

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD  +   +  EF+DF +   +  +AHNA FD  FI      ++ D      I+DT+ 
Sbjct: 488 MVKDAKTIDIVIKEFYDFVD--GSILVAHNAAFDTSFIKK--NYLDNDLEFNYPIMDTIP 543

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + +  +P+ ++  LN +CK  GIT+ +   H A+ D+   + V++K
Sbjct: 544 LCKYLYPALNKYKLNVICKYLGITLLNH--HRAVDDAKATAMVFLK 587


>gi|254974851|ref|ZP_05271323.1| DNA polymerase III PolC-type [Clostridium difficile QCD-66c26]
 gi|255313978|ref|ZP_05355561.1| DNA polymerase III PolC-type [Clostridium difficile QCD-76w55]
 gi|255516658|ref|ZP_05384334.1| DNA polymerase III PolC-type [Clostridium difficile QCD-97b34]
 gi|255649757|ref|ZP_05396659.1| DNA polymerase III PolC-type [Clostridium difficile QCD-37x79]
 gi|260682913|ref|YP_003214198.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
 gi|260686511|ref|YP_003217644.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
 gi|260209076|emb|CBA62219.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
 gi|260212527|emb|CBE03476.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
          Length = 1432

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 90/150 (60%), Gaps = 9/150 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG  + ND+I EIGAV++ ++   +R F   + P  +  S +  +L GIT+E 
Sbjct: 419 VVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGITNEL 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KDKP+   I  +F +F    ++  +AHNA+FD GFI+ + +   +  L  ++ +DTL +
Sbjct: 477 IKDKPTIEEILPKFMEFVG--DSVLVAHNAEFDTGFISQKCRE--QGLLYNNKKVDTLML 532

Query: 130 ARRKHPS-SRNDLNSLCKRYGITI--SHRS 156
           AR   P+  R+ LN + K  GI +   HR+
Sbjct: 533 ARVMLPNLKRHRLNVVAKELGIPLLNHHRA 562


>gi|73662813|ref|YP_301594.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642441|sp|Q49X49|DPO3_STAS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|72495328|dbj|BAE18649.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 1438

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 99/168 (58%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  P+ R +  E +K L  I+D+
Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVKDGEIIDK-FERFSNPHERLS--ETIKNLTHISDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF  +    +A ++AHNA FD+GFI+   + +       + +IDTL 
Sbjct: 480 MLVDAPEIEEVLTEFKSWVG--DAIFVAHNASFDMGFIDTGYEHVGIGA-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYMFIKML 582


>gi|296451302|ref|ZP_06893042.1| DNA polymerase III PolC [Clostridium difficile NAP08]
 gi|296880346|ref|ZP_06904309.1| DNA polymerase III PolC [Clostridium difficile NAP07]
 gi|296259908|gb|EFH06763.1| DNA polymerase III PolC [Clostridium difficile NAP08]
 gi|296428587|gb|EFH14471.1| DNA polymerase III PolC [Clostridium difficile NAP07]
          Length = 1432

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 9/150 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG  + ND+I EIGAV++ ++   +R F   + P  +  S +  +L GIT+E 
Sbjct: 419 VVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGITNEL 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KDKP+   +  +F +F    ++  +AHNA+FD GFI+ + +   +  L  ++ +DTL +
Sbjct: 477 IKDKPTIEEVLPKFMEFVG--DSVLVAHNAEFDTGFISQKCRE--QGLLYNNKKVDTLML 532

Query: 130 ARRKHPS-SRNDLNSLCKRYGITI--SHRS 156
           AR   P+  R+ LN + K  GI +   HR+
Sbjct: 533 ARVMLPNLKRHRLNVVAKELGIPLLNHHRA 562


>gi|317498937|ref|ZP_07957220.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893770|gb|EFV15969.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1228

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG +S NDRIIEIGAV +++  +   TF  F+ P  R    +  +L  ITD+ 
Sbjct: 203 VVFDIETTGFNSVNDRIIEIGAVRVVE-GEIKETFSEFVNPE-RPIPYKITQLTTITDDM 260

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD  +   I  +F  F   + +  +AHNA FD GFI    +R+N  P D + ++DTL +
Sbjct: 261 VKDAGTIEEILPQFLKFC--EGSVLVAHNAGFDTGFIRENAKRLNL-PYDHT-VVDTLGL 316

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR       +  L+++CK   I +   + H A+ D+     ++++ +
Sbjct: 317 ARCLMGHLGKFTLDNICKHLNIIL--ETHHRAVDDATATGKIFVEFI 361


>gi|255655317|ref|ZP_05400726.1| DNA polymerase III PolC-type [Clostridium difficile QCD-23m63]
          Length = 1432

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 9/150 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG  + ND+I EIGAV++ ++   +R F   + P  +  S +  +L GIT+E 
Sbjct: 419 VVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGITNEL 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KDKP+   +  +F +F    ++  +AHNA+FD GFI+ + +   +  L  ++ +DTL +
Sbjct: 477 IKDKPTIEEVLPKFMEFVG--DSVLVAHNAEFDTGFISQKCRE--QGLLYNNKKVDTLML 532

Query: 130 ARRKHPS-SRNDLNSLCKRYGITI--SHRS 156
           AR   P+  R+ LN + K  GI +   HR+
Sbjct: 533 ARVMLPNLKRHRLNVVAKELGIPLLNHHRA 562


>gi|330833568|ref|YP_004402393.1| DNA polymerase III PolC [Streptococcus suis ST3]
 gi|329307791|gb|AEB82207.1| DNA polymerase III PolC [Streptococcus suis ST3]
          Length = 1463

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/148 (37%), Positives = 80/148 (54%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL + N+ +I+I A ++    K N    F  F+ P G   S     L GITD
Sbjct: 426 VVFDVETTGLSAVNNALIQIAASKM---HKGNIIAEFDEFIDP-GHPLSQFTTDLTGITD 481

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++       +  EF DF   Q++  +AHNA FDVGF+N   +R    P+    +IDTL
Sbjct: 482 EHVRGSKPLEQVLREFQDFC--QDSVMVAHNATFDVGFMNVNYERAGL-PIISQPVIDTL 538

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+G+ + H
Sbjct: 539 EFARNLYPDFKRHGLGPLTKRFGVALEH 566


>gi|146319608|ref|YP_001199320.1| DNA polymerase III PolC [Streptococcus suis 05ZYH33]
 gi|146321806|ref|YP_001201517.1| DNA polymerase III PolC [Streptococcus suis 98HAH33]
 gi|253752606|ref|YP_003025747.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|253754432|ref|YP_003027573.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|253756365|ref|YP_003029505.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|166217454|sp|A4W428|DPO3_STRS2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217456|sp|A4VXT1|DPO3_STRSY RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|145690414|gb|ABP90920.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus suis 05ZYH33]
 gi|145692612|gb|ABP93117.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus suis 98HAH33]
 gi|251816895|emb|CAZ52544.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|251818829|emb|CAZ56672.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|251820678|emb|CAR47440.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|292559223|gb|ADE32224.1| DNA polymerase III, alpha subunit [Streptococcus suis GZ1]
 gi|319759021|gb|ADV70963.1| DNA polymerase III PolC [Streptococcus suis JS14]
          Length = 1463

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/148 (37%), Positives = 80/148 (54%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL + N+ +I+I A ++    K N    F  F+ P G   S     L GITD
Sbjct: 426 VVFDVETTGLSAVNNALIQIAASKM---HKGNIIAEFDEFIDP-GHPLSQFTTDLTGITD 481

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++       +  EF DF   Q++  +AHNA FDVGF+N   +R    P+    +IDTL
Sbjct: 482 EHVRGSKPLEQVLREFQDFC--QDSVMVAHNATFDVGFMNVNYERAGL-PIISQPVIDTL 538

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+G+ + H
Sbjct: 539 EFARNLYPDFKRHGLGPLTKRFGVALEH 566


>gi|302024523|ref|ZP_07249734.1| DNA polymerase III PolC [Streptococcus suis 05HAS68]
          Length = 1463

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/148 (37%), Positives = 80/148 (54%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL + N+ +I+I A ++    K N    F  F+ P G   S     L GITD
Sbjct: 426 VVFDVETTGLSAVNNALIQIAASKM---HKGNIIAEFDEFIDP-GHPLSQFTTDLTGITD 481

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++       +  EF DF   Q++  +AHNA FDVGF+N   +R    P+    +IDTL
Sbjct: 482 EHVRGSKPLEQVLREFQDFC--QDSVMVAHNATFDVGFMNVNYERAGL-PIISQPVIDTL 538

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+G+ + H
Sbjct: 539 EFARNLYPDFKRHGLGPLTKRFGVALEH 566


>gi|223933907|ref|ZP_03625870.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
 gi|223897433|gb|EEF63831.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
          Length = 1463

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 56/148 (37%), Positives = 80/148 (54%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL + N+ +I+I A ++    K N    F  F+ P G   S     L GITD
Sbjct: 426 VVFDVETTGLSAVNNALIQIAASKM---HKGNIIAEFDEFIDP-GHPLSQFTTDLTGITD 481

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++       +  EF DF   Q++  +AHNA FDVGF+N   +R    P+    +IDTL
Sbjct: 482 EHVRGSKPLEQVLREFQDFC--QDSVMVAHNATFDVGFMNVNYERAGL-PIISQPVIDTL 538

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+G+ + H
Sbjct: 539 EFARNLYPDFKRHGLGPLTKRFGVALEH 566


>gi|126698903|ref|YP_001087800.1| DNA polymerase III PolC-type [Clostridium difficile 630]
 gi|255100324|ref|ZP_05329301.1| DNA polymerase III PolC-type [Clostridium difficile QCD-63q42]
 gi|255306262|ref|ZP_05350434.1| DNA polymerase III PolC-type [Clostridium difficile ATCC 43255]
 gi|115250340|emb|CAJ68162.1| DNA polymerase III PolC-type (PolIII) [Clostridium difficile]
          Length = 1432

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 9/150 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG  + ND+I EIGAV++ ++   +R F   + P  +  S +  +L GIT+E 
Sbjct: 419 VVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGITNEL 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KDKP+   +  +F +F    ++  +AHNA+FD GFI+ + +   +  L  ++ +DTL +
Sbjct: 477 IKDKPTIEEVLPKFMEFVG--DSVLVAHNAEFDTGFISQKCRE--QGLLYNNKKVDTLML 532

Query: 130 ARRKHPS-SRNDLNSLCKRYGITI--SHRS 156
           AR   P+  R+ LN + K  GI +   HR+
Sbjct: 533 ARVMLPNLKRHRLNVVAKELGIPLLNHHRA 562


>gi|89098599|ref|ZP_01171481.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
 gi|89086561|gb|EAR65680.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
          Length = 1440

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGL +  D IIE+ AV++ D    +R F+ F  P+    S   + L GITD+ 
Sbjct: 426 IVFDVETTGLSAVYDTIIELAAVKIHDGEIIDR-FESFANPH-HPLSATTIDLTGITDDD 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ P    +   F ++   QN   +AHNA FD+GF+N   +R        + +IDTL +
Sbjct: 484 VRNAPEVEEVLRRFKEW--SQNDILVAHNASFDMGFLNTGYKRYGLGKA-ANPVIDTLEL 540

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P  +N  LN+L K++ + ++    H A+ D+     + IKM+
Sbjct: 541 ARFLLPEMKNHRLNTLAKKFDVELTQH--HRAIYDAEATGYLLIKML 585


>gi|56475526|ref|YP_157115.1| exonuclease [Aromatoleum aromaticum EbN1]
 gi|56311569|emb|CAI06214.1| conserved hypothetical protein, possibly exonuclease [Aromatoleum
           aromaticum EbN1]
          Length = 642

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 20/173 (11%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNR--TFQVFLCPNGRKNSPEALKLHGITD 67
           VFD ETTGLD SK D II+IGA  +++ SK  R  +F+  + P  R  SPE++K+HGIT 
Sbjct: 454 VFDTETTGLDPSKGDEIIQIGATRIVN-SKLLRQESFEQLIDPE-RGVSPESVKIHGITP 511

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR----I 123
           + L  +P+ + +   F  F   Q+   IAHNA FD+ F+        K+ +   R    +
Sbjct: 512 DMLAGQPTIARVLPAFHAF--AQDTVLIAHNAAFDMRFLQL------KETMTGLRFDQPV 563

Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DTL ++   HP+  +  L ++ +R  +TI  R  H AL D+ + ++V +K++
Sbjct: 564 LDTLLLSAVVHPNQESHRLEAIAERLNLTIIGR--HTALGDAIVTAEVLLKLI 614


>gi|237737108|ref|ZP_04567589.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC
           9817]
 gi|229420970|gb|EEO36017.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC
           9817]
          Length = 1450

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 95/168 (56%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           IVFD+ET GL+S    IIEIGAV+L      +R  Q+    N +K  P+ ++ L  IT E
Sbjct: 425 IVFDLETMGLNSHEHEIIEIGAVKLRGNRIVDRFSQLV---NPQKPIPKKIQELTNITQE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P+   +  +F +F    +A  +AHNA FD+GFI  +++R+      P+ IIDTL 
Sbjct: 482 MVDNMPTIEEVLPKFMEFVG--DATMVAHNAAFDMGFIRRDVKRLLGYDYTPA-IIDTLQ 538

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR  +P  +   L +L K  G+++   S H A+ DS   ++++I  M
Sbjct: 539 MARDLYPDLKGYGLKNLNKVLGLSL--ESHHRAVDDSQATANMFIIFM 584


>gi|170761478|ref|YP_001786710.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408467|gb|ACA56878.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 855

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 94/168 (55%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+E+TG+++  D I++I  +++ +  +   +FQ FL P  +K+  ++  +HG +D+F
Sbjct: 496 VVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLIP--KKSVGDSYLVHGFSDQF 553

Query: 70  LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK+   +   +  +F +F   ++   + HN  FD+  +N+EL+R++ +        DTL 
Sbjct: 554 LKENGENKKVVLKDFLEFI--KDTVIVGHNVTFDISILNSELERLSLEKASFKTYYDTLD 611

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IARR +PS  N  L +L K +      +S H A+ D     DV + M+
Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657


>gi|168179984|ref|ZP_02614648.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum NCTC 2916]
 gi|182669095|gb|EDT81071.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum NCTC 2916]
          Length = 855

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 94/168 (55%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+E+TG+++  D I++I  +++ +  +   +FQ FL P  +K+  ++  +HG +D+F
Sbjct: 496 VVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLTP--KKSVGDSYLVHGFSDQF 553

Query: 70  LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK+   +   +  +F +F   ++   + HN  FD+  +N+EL+R++ +        DTL 
Sbjct: 554 LKENGENKKVVLKDFLEFI--KDTVIVGHNVAFDISILNSELERLSLEKASFKTYYDTLD 611

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IARR +PS  N  L +L K +      +S H A+ D     DV + M+
Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657


>gi|257898236|ref|ZP_05677889.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
 gi|257836148|gb|EEV61222.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
          Length = 1450

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 8/165 (4%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N+   +VFD+ETTGL +  D IIE+ AV++        +F  F+ P G   S   + L G
Sbjct: 421 NEATYVVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTG 478

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITDE ++   S   +   F +F   +    +AHNA FD+GF+N    R    P   + +I
Sbjct: 479 ITDEMVRGSKSEEEVLRMFLEF--SKGTILVAHNAAFDMGFLNTSYARYGI-PEAANPVI 535

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166
           DTL +AR  +P   R  L  L K++G+++   HR+ + A    HL
Sbjct: 536 DTLELARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580


>gi|134299812|ref|YP_001113308.1| DNA polymerase III subunit alpha [Desulfotomaculum reducens MI-1]
 gi|134052512|gb|ABO50483.1| DNA polymerase III catalytic subunit, PolC type [Desulfotomaculum
           reducens MI-1]
          Length = 1426

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 12/152 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           ++ D ETTG   + D IIEIGAV+ L+  +  R F   + P  +K  P E  KL GITDE
Sbjct: 415 VIIDFETTGFSPQTDEIIEIGAVKYLNGEEVGR-FGTLVNP--KKEIPFEVTKLTGITDE 471

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127
            +KD P      +   +F  E  A  +AHNA FD+ F+   L++ + ++  +P+  IDTL
Sbjct: 472 MVKDAPDGKEALTALSEFMGE--AVLVAHNASFDLSFLRVGLRKYLKQEVTNPA--IDTL 527

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITIS--HRS 156
            +AR   P+ +N  LN+L K + I ++  HR+
Sbjct: 528 GVARVLFPNLKNHKLNTLVKEFKIELTNHHRA 559


>gi|85706434|ref|ZP_01037528.1| putative exonuclease [Roseovarius sp. 217]
 gi|85669207|gb|EAQ24074.1| putative exonuclease [Roseovarius sp. 217]
          Length = 688

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 90/168 (53%), Gaps = 6/168 (3%)

Query: 10  IVFDIETTGLDSKN-DRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD ETTGL  +  D I++I  + +++        F + + P GR   P + ++H I+D
Sbjct: 495 VVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGECFDMLVNP-GRAIPPASTRVHHISD 553

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++  P        F DF   Q A  +AHNA FD+ F+  + + I +   +P      +
Sbjct: 554 EMVQGAPGIVEAGRRFHDFC--QGAVLVAHNAPFDLAFLRLKEKVIGRRFDNPVLCTVLM 611

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           S     H S ++ L++LC R+GITI   ++H A+ D+   ++V+++M+
Sbjct: 612 SAGLFDH-SGQHTLDALCDRFGITIPPEARHTAMGDTVATAEVFVRML 658


>gi|293570615|ref|ZP_06681666.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E980]
 gi|291609286|gb|EFF38557.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E980]
          Length = 1450

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 8/165 (4%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N+   +VFD+ETTGL +  D IIE+ AV++        +F  F+ P G   S   + L G
Sbjct: 421 NEATYVVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTG 478

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITDE ++   S   +   F +F   +    +AHNA FD+GF+N    R    P   + +I
Sbjct: 479 ITDEMVRGSKSEEEVLRMFLEF--SKGTILVAHNAAFDMGFLNTSYARYGI-PEAANPVI 535

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166
           DTL +AR  +P   R  L  L K++G+++   HR+ + A    HL
Sbjct: 536 DTLELARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580


>gi|154484062|ref|ZP_02026510.1| hypothetical protein EUBVEN_01771 [Eubacterium ventriosum ATCC
           27560]
 gi|149735104|gb|EDM50990.1| hypothetical protein EUBVEN_01771 [Eubacterium ventriosum ATCC
           27560]
          Length = 237

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 90/170 (52%), Gaps = 15/170 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIET+G+  K D+IIEIGAV++ D  K   TF   + P G K SP   +L GITDE 
Sbjct: 6   VCVDIETSGIRVKWDKIIEIGAVKVRD-GKAVDTFSELINP-GLKLSPYITELTGITDEM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127
           LKDKP    +   F +F  +     + HN  FD  F+  NA  Q++  D +     IDTL
Sbjct: 64  LKDKPFIEEVLPRFIEFAGDDVI--MGHNIMFDYSFLKQNAINQKLKFDKMG----IDTL 117

Query: 128 SIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            IAR+  K   SR  L  LC  YG  I+  + H A  D+ + S +Y  +M
Sbjct: 118 KIARKTLKGLESRG-LEYLCNYYG--IADENHHRAFNDAEVTSKLYNVLM 164


>gi|310779125|ref|YP_003967458.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
 gi|309748448|gb|ADO83110.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
          Length = 1442

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 93/164 (56%), Gaps = 11/164 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           +V+D+ET GL+S  + IIEIGA++L      ++  Q+    N  K+ P  ++ L GITD+
Sbjct: 416 VVYDLETMGLNSHENEIIEIGAIKLKGTRIVDKYSQLI---NPGKSIPSKIQELTGITDD 472

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127
            +KD+PS   +   F +F    +A  +AHNA+FD+GF+  ++++  N     PS +IDTL
Sbjct: 473 MVKDEPSIEEVLPGFLEFAG--DATLVAHNARFDIGFLTRDVKKYTNIKDYKPS-VIDTL 529

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLS 168
             AR   P  R   L S+ K+ G+ +   HR+   +   +H+ +
Sbjct: 530 QWARDLLPDLRGYGLKSVTKKLGVALENHHRAVDDSQATAHMFA 573


>gi|282890058|ref|ZP_06298591.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500064|gb|EFB42350.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 231

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 94/171 (54%), Gaps = 11/171 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ + +D ETTG+ +  D +IE+   + +     NRTF+  + P G    PEA  +H IT
Sbjct: 1   MKALYYDTETTGIKADRDYVIELAVYDPVG----NRTFERLINP-GVPIPPEATAIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIID 125
           DE + + PSF  I  EF +F +  +   IAHN  +FD+ F+  E +R N++ L P + +D
Sbjct: 56  DEMVANAPSFGEIIEEFKEFCS-GDVVLIAHNNDQFDIHFLRNEFKRSNQE-LPPWKFLD 113

Query: 126 TLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL  ARR ++   R+ L  L   YG  I+  + H AL D  +L  V+  M+
Sbjct: 114 TLKWARRYRNDLPRHTLQFLRGIYG--IAENNAHRALDDVIVLHQVFSAML 162


>gi|160940984|ref|ZP_02088323.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436074|gb|EDP13841.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1565

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 101/173 (58%), Gaps = 18/173 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66
           +VFDIETTG   K ++IIEIGAV+++D   T++ F  F+ P    + P   +  KL GI 
Sbjct: 543 VVFDIETTGFSPKKNKIIEIGAVKVVDGRITDK-FSTFVNP----DVPIPFDIEKLTGIN 597

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  +   P    I  +F +F    +A  +AHNA FDVGFI    +++   P DP+ ++DT
Sbjct: 598 DSMVLPYPKIDVILPQFLEFVG--DAVLVAHNASFDVGFIGHFAEKLEL-PFDPT-VLDT 653

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMM 175
           ++IAR   P+ +R  L+++ K   + IS ++ H A+ D+   +++   ++KM+
Sbjct: 654 VAIARLLLPNLNRFKLDTVAK--ALNISLQNHHRAVDDAGATAEIFAAFVKML 704


>gi|21702589|gb|AAM75986.1|AF481102_22 DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps]
          Length = 203

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 5/169 (2%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + R +V D ETTGL  +  R+ E+G VE+     T   F  ++ P  R     A  +H +
Sbjct: 2   QTRYVVLDTETTGLSPRYHRLAEVGCVEIACGRITGNFFHSYINPRQRMTR-GAQAVHRL 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
            DEFL ++P+F +I      F        + HN  FD+ F++A L      P       +
Sbjct: 61  RDEFLAEQPTFRAIAQRLLFFLCRST--LVGHNLSFDLNFLDAGLATAGFMPAARYCHGV 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           IDT+    ++    R  L++ C R G+    R++HGAL D+ LL++ ++
Sbjct: 119 IDTMLHLAQRGRRRRFSLDACCDRLGVRRGDRARHGALEDAVLLAEAFV 167


>gi|226356768|ref|YP_002786508.1| DNA polymerase III subunit epsilon [Deinococcus deserti VCD115]
 gi|226318758|gb|ACO46754.1| putative DNA-directed DNA polymerase (DNA polymerase III, epsilon
           subunit) [Deinococcus deserti VCD115]
          Length = 202

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 22/182 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLD------------YSKTNRTFQVFLCPNGRK 54
           M  +VFD+ETTGL  + D I+EIGA+ +++               TN   +  + P    
Sbjct: 1   MNVVVFDLETTGLSPERDGIVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPW--- 57

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
               A ++HGI++E ++  P+   +  EF +F  +     +AHN  FD GF+ A+ +R+ 
Sbjct: 58  ---HAQRVHGISNEMVRSAPTIEEVLPEFLEFVGDSAV--VAHNVGFDCGFMRAQARRLG 112

Query: 115 KDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                P+    T+ ++RR  P  R ++L  L +R G+  +   +H +  D  + +  Y++
Sbjct: 113 MV-WAPAGEHCTVQLSRRAFPKERAHNLTVLAERLGLNFAPGGRHRSFGDVQVTAHAYVR 171

Query: 174 MM 175
           ++
Sbjct: 172 LL 173


>gi|257887081|ref|ZP_05666734.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257895646|ref|ZP_05675299.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|293377743|ref|ZP_06623932.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium PC4.1]
 gi|257823135|gb|EEV50067.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257832211|gb|EEV58632.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|292643743|gb|EFF61864.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium PC4.1]
          Length = 1450

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 8/165 (4%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N+   +VFD+ETTGL +  D IIE+ AV++        +F  F+ P G   S   + L G
Sbjct: 421 NEATYVVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTG 478

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITDE ++   S   +   F +F   +    +AHNA FD+GF+N    R    P   + +I
Sbjct: 479 ITDEMVRGSKSEEEVLRMFLEF--SKGTILVAHNAAFDMGFLNTSYARYGI-PEATNPVI 535

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166
           DTL +AR  +P   R  L  L K++G+++   HR+ + A    HL
Sbjct: 536 DTLELARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580


>gi|77414701|ref|ZP_00790833.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 515]
 gi|77159245|gb|EAO70424.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 515]
          Length = 1036

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD  
Sbjct: 431 VVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSAFTTELTGITDNH 488

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++       +  EF +F   Q    +AHNA FDVGF+NA  +R N  PL    +IDTL  
Sbjct: 489 VRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQPVIDTLEF 545

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ + + H
Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH 571


>gi|168180697|ref|ZP_02615361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum NCTC 2916]
 gi|182668382|gb|EDT80361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum NCTC 2916]
          Length = 1432

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFD+ETTG  SKND+IIEIGAV+ ++  K    F  F+ P  ++  P+ + +L  ITD 
Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVK-IEKGKIVDRFSEFVNP--KRTIPDKITELTSITDN 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + DK +   I   F DF    ++  +AHNA FDV FIN   + +  +    + ++DT++
Sbjct: 476 MVDDKETIDKILPRFIDFIG--DSVVVAHNASFDVSFINKNCKDLKIEF--ENSVMDTVT 531

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++R   P   R+ LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 532 LSRFLFPELKRHKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575


>gi|77412300|ref|ZP_00788615.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
 gi|77161647|gb|EAO72643.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
          Length = 1468

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD  
Sbjct: 431 VVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSAFTTELTGITDNH 488

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++       +  EF +F   Q    +AHNA FDVGF+NA  +R N  PL    +IDTL  
Sbjct: 489 VRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQPVIDTLEF 545

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ + + H
Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH 571


>gi|227551758|ref|ZP_03981807.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|227179063|gb|EEI60035.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
          Length = 1450

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 8/165 (4%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N+   +VFD+ETTGL +  D IIE+ AV++        +F  F+ P G   S   + L G
Sbjct: 421 NEATYVVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTG 478

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITDE ++   S   +   F +F   +    +AHNA FD+GF+N    R    P   + +I
Sbjct: 479 ITDEMVRGSKSEEEVLRMFLEF--SKGTILVAHNAAFDMGFLNTSYARYGI-PEATNPVI 535

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166
           DTL +AR  +P   R  L  L K++G+++   HR+ + A    HL
Sbjct: 536 DTLELARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580


>gi|22538049|ref|NP_688900.1| DNA polymerase III PolC [Streptococcus agalactiae 2603V/R]
 gi|25011937|ref|NP_736332.1| DNA polymerase III PolC [Streptococcus agalactiae NEM316]
 gi|76798733|ref|ZP_00780952.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 18RS21]
 gi|54036993|sp|P63984|DPO3_STRA5 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040954|sp|P63983|DPO3_STRA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|22534952|gb|AAN00773.1|AE014277_21 DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 2603V/R]
 gi|24413479|emb|CAD47557.1| DNA polymerase III (alpha subunit) [Streptococcus agalactiae
           NEM316]
 gi|76585912|gb|EAO62451.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 18RS21]
          Length = 1468

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 77/146 (52%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++         F  F+ P G   S    +L GITD  
Sbjct: 431 VVFDVETTGLSAANNDLIQIAASKMFK-GNIIEQFDEFIDP-GHPLSAFTTELTGITDNH 488

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++       +  EF +F   Q    +AHNA FDVGF+NA  +R N  PL    +IDTL  
Sbjct: 489 VRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQPVIDTLEF 545

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ + + H
Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH 571


>gi|332982461|ref|YP_004463902.1| DNA polymerase III catalytic subunit, PolC type [Mahella
           australiensis 50-1 BON]
 gi|332700139|gb|AEE97080.1| DNA polymerase III catalytic subunit, PolC type [Mahella
           australiensis 50-1 BON]
          Length = 1427

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 9/185 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTGL++  D+IIEIGAV + D  K    F  F+ P+     P  + L GITD+ 
Sbjct: 416 VVLDIETTGLNAGTDKIIEIGAVRIKD-GKYKDEFSSFINPH-VPIPPSIVNLTGITDDM 473

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P    +   F +F    +A  +AHNA+FD+GFI    Q+ N    +P  ++DTL++
Sbjct: 474 VSNAPDEGDVLQRFMEFAG--DAVLVAHNAQFDMGFIRQHGQKYNLKFANP--VLDTLTL 529

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           AR+     ++  L++L     I + +   H A+ D+   +++  + M   S++   F ++
Sbjct: 530 ARQLFKGLKHYKLDTLAHHLHIDMDNH--HRAVDDARTAAEILFRCMDKLSEMGCQFLSD 587

Query: 189 EDRFF 193
            +R F
Sbjct: 588 LNRVF 592


>gi|319745868|gb|EFV98158.1| DNA polymerase III PolC [Streptococcus agalactiae ATCC 13813]
          Length = 1468

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD  
Sbjct: 431 VVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSAFTTELTGITDNH 488

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++       +  EF +F   Q    +AHNA FDVGF+NA  +R N  PL    +IDTL  
Sbjct: 489 VRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQPVIDTLEF 545

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ + + H
Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH 571


>gi|255070749|ref|XP_002507456.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
 gi|226522731|gb|ACO68714.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
          Length = 1473

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 18/185 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL+   +RIIEI AV + D   T++     + P      P  + L GIT+  
Sbjct: 296 VVFDLETTGLNKDRNRIIEIAAVNVSD--PTHQPMSTLVNPGRFAVPPPVVALTGITNAM 353

Query: 70  LKDK--PSFSSIFSEFWDFFNEQNAE-------WIAHNAK-FDVGFINAELQRINKDPLD 119
           +     PSF      F ++ +E             AHNA+ FD GF+ AE +R+ ++  +
Sbjct: 354 VSAPAVPSFQRAAELFQEYIDEARRRCGGASVLLAAHNARQFDAGFLQAEYRRLGRELPE 413

Query: 120 PSRIIDTLSIARRKH-----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             R +DTL +AR+       P     L SL   +G+  +  S H A  D+ +L DV ++ 
Sbjct: 414 DWRFVDTLPLARKTLAKEAVPGGSYKLESLAAHFGVDTAGASAHRAEADARMLGDV-LQR 472

Query: 175 MVGGS 179
           +VG S
Sbjct: 473 LVGCS 477


>gi|260583917|ref|ZP_05851665.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
           700633]
 gi|260158543|gb|EEW93611.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
           700633]
          Length = 1441

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 92/158 (58%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++   +  ++ F+ F+ P G   S   ++L GITD+ 
Sbjct: 427 VVFDVETTGLSAIYDSIIELAAVKMHKGNVIDK-FEEFIDP-GHPLSATTIQLTGITDDM 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--IIDTL 127
           ++   S + +  EF  F   ++   +AHNA FD+GF+N   +   K+ L+ +   +IDTL
Sbjct: 485 VRGSKSQAQVLKEFAAF--TKDTILVAHNASFDMGFLNTGYE---KEGLEKTTQPVIDTL 539

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  HP  ++  LN+L KRY + +     H A+ DS
Sbjct: 540 ELSRLLHPHLKSHRLNTLAKRYNVALEQH--HRAVFDS 575


>gi|241888547|ref|ZP_04775855.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
           haemolysans ATCC 10379]
 gi|241864814|gb|EER69188.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
           haemolysans ATCC 10379]
          Length = 1449

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 105/167 (62%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ DR+IEI AV++ + ++ + +F+ ++ P  R  S    +L  IT++ 
Sbjct: 430 VVFDVETTGLSAERDRLIEIAAVKVKNGAEID-SFESYINPQ-RPISELITRLTSITNDD 487

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P    + + F+++ ++ +   +AHNAKFD+GF++   +R+  +  + +  IDTL +
Sbjct: 488 VKDAPLEKEVMTNFYNWLDKDDI-LVAHNAKFDLGFLDTCFERLGLENKNNAS-IDTLFV 545

Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R ++  + R+ L++L K Y + +     H A+ D+   +++++KM+
Sbjct: 546 SRAENKEAKRHGLSNLAKLYKVRLVQH--HRAIYDTKATAEIFVKML 590


>gi|167766537|ref|ZP_02438590.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1]
 gi|167711660|gb|EDS22239.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1]
          Length = 1473

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG +S NDRIIEIGAV +++  +   TF  F+ P  R    +  +L  ITD+ 
Sbjct: 448 VVFDIETTGFNSVNDRIIEIGAVRVVE-GEIKETFSEFVNPE-RPIPYKITQLTTITDDM 505

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD  +   I  +F  F     +  +AHNA FD GFI    +R+N  P D + ++DTL +
Sbjct: 506 VKDAGTIEEILPQFLKFC--AGSVLVAHNAGFDTGFIRENAKRLNL-PYDHT-VVDTLGL 561

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR       +  L+++CK   I +   + H A+ D+     ++++ +
Sbjct: 562 ARCLMGHLGKFTLDNICKHLNIIL--ETHHRAVDDATATGKIFVEFI 606


>gi|291558576|emb|CBL37376.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
           bacterium SSC/2]
          Length = 1470

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG +S NDRIIEIGAV +++  +   TF  F+ P  R    +  +L  ITD+ 
Sbjct: 445 VVFDIETTGFNSVNDRIIEIGAVRVVE-GEIKETFSEFVNPE-RPIPYKITQLTTITDDM 502

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD  +   I  +F  F     +  +AHNA FD GFI    +R+N  P D + ++DTL +
Sbjct: 503 VKDAGTIEEILPQFLKFC--AGSVLVAHNAGFDTGFIRENAKRLNL-PYDHT-VVDTLGL 558

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR       +  L+++CK   I +   + H A+ D+     ++++ +
Sbjct: 559 ARCLMGHLGKFTLDNICKHLNIIL--ETHHRAVDDATATGKIFVEFI 603


>gi|328868531|gb|EGG16909.1| DNA polymerase III [Dictyostelium fasciculatum]
          Length = 782

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 7/166 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I FD+ETTG  S+ D IIE+GAVEL+D  +T  TFQ +  P    + PEA K+H +  
Sbjct: 401 RVICFDLETTGFGSE-DSIIEVGAVELIDGCRTGLTFQSYAKPKAPIH-PEAAKVHNLNA 458

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDT 126
             L   P    + + F DF  +  A  +AHN  FD   +  E+ R +K P++ S +   T
Sbjct: 459 YLLSSAPPIEFVLASFMDFVGD--ALLVAHNLAFDHRMLIQEMMR-SKIPINRSKKCFCT 515

Query: 127 LSIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVY 171
           +   R+       +L+++  +  I  +  R  HGAL+DS +L+ VY
Sbjct: 516 MKYYRKVIKDVSYNLDAISSQLKIDKLLLRRTHGALVDSEILAIVY 561


>gi|309389228|gb|ADO77108.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium
           praevalens DSM 2228]
          Length = 1404

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 92/167 (55%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGL+     IIEIGAV+     K    F+ F+ P G +   +  ++ GI D  
Sbjct: 393 IVFDLETTGLNPSQHEIIEIGAVKYQGGKKIAE-FESFINP-GVRIPAKITEITGINDRM 450

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+ P    + ++F +F        +AHNA FD GFI   L+++  +  D   ++DTL +
Sbjct: 451 VKNAPGLEKVINDFIEFAG--TGVLVAHNADFDYGFIRTALEKLEIEK-DDYTVLDTLGL 507

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R     S+N  LN+L K +G+ + +   H AL D++  ++V  K++
Sbjct: 508 SRAVVKDSKNHKLNTLAKYFGVDLENH--HRALDDANATAEVLAKLL 552


>gi|269120698|ref|YP_003308875.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268614576|gb|ACZ08944.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC
           33386]
          Length = 1421

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+FDIETTG D   D+IIEIGAV+L   +  +R F  F+ P       E +KL  ITD+ 
Sbjct: 400 IIFDIETTGFDPYKDKIIEIGAVKLKGRNIIDR-FSAFVNPE-VPIPEEIIKLTNITDDM 457

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD     ++   F +F    +   +AHNAKFDVGF+  + +++  + L PS +IDTL  
Sbjct: 458 VKDAELIDTVLPRFLEFCG--DCTMVAHNAKFDVGFLTQKARQLELEFL-PS-VIDTLYW 513

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR       R +L +L   + I++ +   H A+ D+   + ++IKM+
Sbjct: 514 ARVLITDLKRFNLKALANYFNISLDNH--HRAVDDAEATASIFIKML 558


>gi|171778812|ref|ZP_02919874.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282458|gb|EDT47882.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 1464

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 6/154 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  N+   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 419 IELNEATFVVFDVETTGLSAVNNDLIQIAASKMYKGNIVEQ-FDEFINP-GHHLSAFTTE 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +++      +   F DF   Q+   +AHNA FDVGF+NA  +R +  P+   
Sbjct: 477 LTGITDNHVRNAKPIEEVLQMFQDFC--QDTVLVAHNATFDVGFMNANYER-HGMPIITQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISH 154
            +IDTL  AR  +P   R+ L  L KR+ +++ H
Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEH 567


>gi|295107656|emb|CBL05199.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 445

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 17/207 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + I FD+ETTGL    DRI+EIGA+   D  K  R+F   + P G + S EA +++ I
Sbjct: 5   KSKFIAFDVETTGLSEYADRIVEIGAICFED-RKPMRSFSTLVNP-GVRISVEASRINHI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           ++E L + PS +  + +F +F  +    N+   AHNA+FD+GF+   L+R+         
Sbjct: 63  SNEMLGNAPSENQAYEQFVEFLGDALAGNSILCAHNARFDMGFLKNTLERLGYS--GTIN 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +DTLS++RR      N       +Y   I + ++H A  D+ +   ++ K+   G Q  
Sbjct: 121 YVDTLSLSRRLISDLPNYKQPTVAQY-FNIQNNAEHRAYGDAEVCGMMFCKLASLGEQ-- 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRD 209
                        E++ +PN++ ++++
Sbjct: 178 -------RLALNREERGIPNLTDVEKE 197


>gi|218133709|ref|ZP_03462513.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991084|gb|EEC57090.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1403

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 19/173 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT- 66
           + +VFDIETTG  ++NDRIIEIGAV++ D    +R F  F+ P      P   K+  +T 
Sbjct: 372 KYVVFDIETTGFSAENDRIIEIGAVKIEDGEIIDR-FSTFVNP----EVPIPFKIEKLTS 426

Query: 67  --DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSR 122
             D  +   P    +  EF +F   +    +AHNA+FD GFI   A  Q +  D    + 
Sbjct: 427 INDSMVMGAPKIEQVLPEFLEFC--EGCVVVAHNAEFDTGFIRNKAAKQGMTFD----NT 480

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++DTL+IAR   P   N  L++L K + + ++  S H A+ D+   + +++KM
Sbjct: 481 VVDTLAIARFLVPRLHNFKLDTLTKHFNVVLT--SHHRAVDDAEATAGIFLKM 531


>gi|254519189|ref|ZP_05131245.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
 gi|226912938|gb|EEH98139.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
          Length = 1442

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFDIETTG  +KND+IIEIGAV++      + TF  F+ P  R    +  +L GITDE 
Sbjct: 430 IVFDIETTGFSAKNDKIIEIGAVKIKGREVID-TFSEFVYPKCRIPY-KITELTGITDEI 487

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D      +  +F +F +      +AHNA FD GFI      +  +    S I+DT+ +
Sbjct: 488 VQDADPIEVVLPKFIEFID--GCAVVAHNAAFDTGFIKKNCNDLGLE--FNSTIVDTVPL 543

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           AR  +P   R  LN + K  G+++ +   H A+ D+   +++++
Sbjct: 544 ARFLYPELKRVKLNLVAKHLGVSLENH--HRAVDDAKATAEIFL 585


>gi|315641197|ref|ZP_07896274.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
 gi|315482964|gb|EFU73483.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
          Length = 1445

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 8/160 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV+ +       +F  F+ P G   S   + L GITDE 
Sbjct: 426 VVFDVETTGLSAVYDTIIELAAVK-MHKGNVEASFDEFIDP-GHPLSNTTINLTGITDEM 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +   F +F   + A  +AHNA FD+GF+N   ++    P   + +IDTL +
Sbjct: 484 VRGSKSEEEVLRLFREF--SEGAVLVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLEL 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166
           AR  +P   R  L  L K++G+++   HR+ + A    HL
Sbjct: 541 ARYLYPEFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580


>gi|323489585|ref|ZP_08094812.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
 gi|323396716|gb|EGA89535.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
          Length = 1435

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 93/162 (57%), Gaps = 9/162 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+  + S   + L GITD+ 
Sbjct: 422 VVFDLETTGLSAVYDTIIELAAVKIKGGQIIDK-FESFANPH-HELSSTTIDLTGITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+ P    +  ++ ++  +     +AHNA FD+GF+    ++   D +  +  IDTL +
Sbjct: 480 VKNAPEVEEVIRKYHEWAGDHI--MVAHNASFDMGFLYVCYKKYGIDTVHAT--IDTLEL 535

Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLLS 168
           AR  HP  +N  LN+L K++GI ++  HR+ +     S+LL+
Sbjct: 536 ARMLHPELKNHRLNTLAKKFGIELTQHHRAIYDTEATSYLLT 577


>gi|226949776|ref|YP_002804867.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A2 str. Kyoto]
 gi|226841257|gb|ACO83923.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A2 str. Kyoto]
          Length = 1432

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFD+ETTG  SKND+IIEIGAV+ ++  K    F  F+ P   ++ P+ + +L  ITD+
Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVK-IEKGKIVDRFSEFVNP--ERSIPDKITELTSITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + DK +   I   F +F    N+  +AHNA FDV FIN   + +  +    + ++DT++
Sbjct: 476 MVDDKEAIDKILPRFIEFIG--NSVVVAHNAAFDVSFINKNCKDLKIEF--KNSVMDTVT 531

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++R   P   R  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 532 LSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575


>gi|322806689|emb|CBZ04258.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065]
          Length = 1432

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFD+ETTG  SKND+IIEIGAV+ ++  K    F  F+ P   ++ P+ + +L  ITD+
Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVK-IEKGKIVDRFSEFVNP--ERSIPDKITELTSITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + DK +   I   F +F    N+  +AHNA FDV FIN   + +  +    + ++DT++
Sbjct: 476 MVDDKEAIDKILPRFIEFIG--NSVVVAHNAAFDVSFINKNCKDLKIEF--KNSVMDTVT 531

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++R   P   R  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 532 LSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575


>gi|257894713|ref|ZP_05674366.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
 gi|257831092|gb|EEV57699.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
          Length = 1450

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 8/160 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++        +F  F+ P G   S   + L GITDE 
Sbjct: 426 VVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTGITDEM 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +   F +F   ++   +AHNA FD+GF+N    R    P   + +IDTL +
Sbjct: 484 VRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPVIDTLEL 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166
           AR  +P   R  L  L K++G+++   HR+ + A    HL
Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580


>gi|153938397|ref|YP_001391721.1| DNA polymerase III PolC [Clostridium botulinum F str. Langeland]
 gi|152934293|gb|ABS39791.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum F str. Langeland]
 gi|295319747|gb|ADG00125.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum F str. 230613]
          Length = 1432

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFD+ETTG  SKND+IIEIGAV+ ++  K    F  F+ P   ++ P+ + +L  ITD+
Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVK-IEKGKIVDRFSEFVNP--ERSIPDKITELTSITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + DK +   I   F +F    N+  +AHNA FDV FIN   + +  +    + ++DT++
Sbjct: 476 MVDDKEAIDKILPRFIEFIG--NSVVVAHNAAFDVSFINKNCKDLKIEF--KNSVMDTVT 531

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++R   P   R  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 532 LSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575


>gi|293556647|ref|ZP_06675212.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
 gi|291601182|gb|EFF31469.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
          Length = 1450

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 8/160 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++        +F  F+ P G   S   + L GITDE 
Sbjct: 426 VVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTGITDEM 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +   F +F   ++   +AHNA FD+GF+N    R    P   + +IDTL +
Sbjct: 484 VRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPVIDTLEL 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166
           AR  +P   R  L  L K++G+++   HR+ + A    HL
Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580


>gi|257867714|ref|ZP_05647367.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257874041|ref|ZP_05653694.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
 gi|257801797|gb|EEV30700.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257808205|gb|EEV37027.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
          Length = 1449

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 8/160 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGL +  D IIE+ AV  +       +F  F+ P G   S   ++L GITDE 
Sbjct: 424 IVFDVETTGLSAVYDTIIELAAVR-MHKGNVEASFDEFIDP-GHPLSRTTVELTGITDEM 481

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +   F +F   + A  +AHNA FD+GF+N   ++    P   + +IDTL +
Sbjct: 482 VRGSKSEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLEL 538

Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166
           AR  +P   R  L  L K++G+++   HR+ + A    HL
Sbjct: 539 ARYLYPEFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 578


>gi|257876620|ref|ZP_05656273.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
 gi|257810786|gb|EEV39606.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
          Length = 1449

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 8/160 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGL +  D IIE+ AV  +       +F  F+ P G   S   ++L GITDE 
Sbjct: 424 IVFDVETTGLSAVYDTIIELAAVR-MHKGNVEASFDEFIDP-GHPLSRTTVELTGITDEM 481

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +   F +F   + A  +AHNA FD+GF+N   ++    P   + +IDTL +
Sbjct: 482 VRGSKSEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLEL 538

Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166
           AR  +P   R  L  L K++G+++   HR+ + A    HL
Sbjct: 539 ARYLYPEFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 578


>gi|257878528|ref|ZP_05658181.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|293567721|ref|ZP_06679063.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1071]
 gi|294618725|ref|ZP_06698257.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1679]
 gi|294620761|ref|ZP_06699968.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium U0317]
 gi|257812756|gb|EEV41514.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|291589564|gb|EFF21370.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1071]
 gi|291595038|gb|EFF26383.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1679]
 gi|291599741|gb|EFF30751.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium U0317]
          Length = 1450

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 8/160 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++        +F  F+ P G   S   + L GITDE 
Sbjct: 426 VVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTGITDEM 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +   F +F   ++   +AHNA FD+GF+N    R    P   + +IDTL +
Sbjct: 484 VRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPVIDTLEL 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166
           AR  +P   R  L  L K++G+++   HR+ + A    HL
Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580


>gi|328957406|ref|YP_004374792.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
 gi|328673730|gb|AEB29776.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
          Length = 1446

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 89/159 (55%), Gaps = 14/159 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + IIE+ AV++    K N   +F+ F+ P G   S   + L GITD
Sbjct: 427 VVFDVETTGLSAVYNSIIELSAVKM---HKGNIIESFEQFIDP-GHPLSQTTINLTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDT 126
           E +    S   + + F +F  +     +AHNA FD+GF+N    + N  D  +P  +IDT
Sbjct: 483 EMVHGSKSEEEVLTLFKEFAGDHI--LVAHNASFDMGFLNTSNAKHNIPDATNP--VIDT 538

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           L ++R  HP  ++  LN+L K+YGI +     H A+ DS
Sbjct: 539 LELSRFLHPQYKSHRLNTLAKKYGINLEQH--HRAIFDS 575


>gi|294613939|ref|ZP_06693874.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
 gi|291593214|gb|EFF24788.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
          Length = 1450

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 8/160 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++        +F  F+ P G   S   + L GITDE 
Sbjct: 426 VVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTGITDEM 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +   F +F   ++   +AHNA FD+GF+N    R    P   + +IDTL +
Sbjct: 484 VRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPVIDTLEL 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166
           AR  +P   R  L  L K++G+++   HR+ + A    HL
Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580


>gi|76788222|ref|YP_329936.1| DNA polymerase III epsilon subunit family exonuclease
           [Streptococcus agalactiae A909]
 gi|77412263|ref|ZP_00788580.1| Unknown [Streptococcus agalactiae CJB111]
 gi|77414710|ref|ZP_00790841.1| Unknown [Streptococcus agalactiae 515]
 gi|76563279|gb|ABA45863.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Streptococcus agalactiae A909]
 gi|77159237|gb|EAO70417.1| Unknown [Streptococcus agalactiae 515]
 gi|77161697|gb|EAO72691.1| Unknown [Streptococcus agalactiae CJB111]
          Length = 604

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 108/191 (56%), Gaps = 12/191 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           K R I FDIETTGL+S+ DRI+E+GAV L +  K   +++  +  N + N S +  +++ 
Sbjct: 50  KNRFIAFDIETTGLNSQQDRIVEVGAV-LFENGKVVDSYESLV--NAKVNISADVTRINN 106

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           IT+  +K+ PS + ++ E  +F  +         AHNAKFD+GF+   L R+  +     
Sbjct: 107 ITNRMIKNAPSENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLGYNG--EI 164

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKMMVGG 178
           + +DTLS++R+     RN   N++ + + +    SHR+K  A++  ++L+ ++  +    
Sbjct: 165 KYLDTLSLSRKNVKGLRNYKQNTVAEYFNLQNKNSHRAKSDAIICGNILTKLFFIIENQK 224

Query: 179 SQINFGFKTNE 189
           S+ +F  K N+
Sbjct: 225 SRKSFSSKNNK 235


>gi|168184630|ref|ZP_02619294.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Bf]
 gi|182672306|gb|EDT84267.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Bf]
          Length = 1432

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFD+ETTG  SKND+IIEIGAV+ ++  K    F  F+ P  ++  P+ + +L  ITD+
Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVK-IEKGKIVDRFSEFVNP--KRIIPDKITELTSITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++DK +   I   F DF    ++  +AHNA FDV FIN   + +  +    + ++DT++
Sbjct: 476 MVQDKETIDKILPRFIDFIG--DSVVVAHNADFDVSFINKNCKDLKIEF--ENSVMDTVT 531

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++R   P   R  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 532 LSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575


>gi|237795859|ref|YP_002863411.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Ba4 str. 657]
 gi|229260819|gb|ACQ51852.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Ba4 str. 657]
          Length = 1432

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFD+ETTG  SKND+IIEIGAV+ ++  K    F  F+ P  ++  P+ + +L  ITD+
Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVK-IEKGKIVDRFSEFVNP--KRIIPDKITELTSITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++DK +   I   F DF    ++  +AHNA FDV FIN   + +  +    + ++DT++
Sbjct: 476 MVQDKETIDKILPRFIDFIG--DSVVVAHNADFDVSFINKNCKDLKIEF--ENSVMDTVT 531

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++R   P   R  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 532 LSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575


>gi|148380379|ref|YP_001254920.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932951|ref|YP_001384598.1| DNA polymerase III PolC [Clostridium botulinum A str. ATCC 19397]
 gi|153935522|ref|YP_001388114.1| DNA polymerase III PolC [Clostridium botulinum A str. Hall]
 gi|148289863|emb|CAL83971.1| DNA polymerase III PolC-type [Clostridium botulinum A str. ATCC
           3502]
 gi|152928995|gb|ABS34495.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931436|gb|ABS36935.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A str. Hall]
          Length = 1432

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFD+ETTG  SKND+IIEIGAV+ ++  K    F  F+ P   ++ P+ + +L  ITD+
Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVK-IEKGKIVDRFSEFVNP--ERSIPDKITELTSITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + DK +   I   F DF    ++  +AHNA FDV FIN   + +  +    + ++DT++
Sbjct: 476 MVDDKEAIDKILPRFIDFIG--DSVVVAHNASFDVSFINKNCKDLKIEF--ENSVMDTVT 531

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++R   P   R  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 532 LSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575


>gi|126654115|ref|ZP_01725933.1| DNA polymerase III PolC [Bacillus sp. B14905]
 gi|126589395|gb|EAZ83545.1| DNA polymerase III PolC [Bacillus sp. B14905]
          Length = 1443

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 93/167 (55%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++ D    ++ ++ F  P+    S   ++L GITD+ 
Sbjct: 429 VVFDVETTGLSTAYDTIIELAAVKIKDGQVIDK-YESFANPH-HPLSATTIELTGITDDM 486

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P    +  EF  F  +     +AHNA FD+GF+    ++   +      +IDTL +
Sbjct: 487 VRHAPEVEQVIKEFHAFIGDGIV--VAHNASFDIGFLYTGYKKFGLEG-TTHPVIDTLEL 543

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR  +P+ +N  LN+LCK++ I ++    H A+ D+     + ++++
Sbjct: 544 ARLLYPTMKNHRLNTLCKKFNIELTQH--HRAIYDTEATGYLLLQLL 588


>gi|257869605|ref|ZP_05649258.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
 gi|257803769|gb|EEV32591.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
          Length = 1449

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 8/160 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGL +  D IIE+ AV  +       +F  F+ P G   S   ++L GITDE 
Sbjct: 424 IVFDVETTGLSAVYDTIIELAAVR-MHKGNVEGSFDEFIDP-GHPLSRTTVELTGITDEM 481

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +   F +F   + A  +AHNA FD+GF+N   ++    P   + +IDTL +
Sbjct: 482 VRGSKSEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLEL 538

Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166
           AR  +P   R  L  L K++G+++   HR+ + A    HL
Sbjct: 539 ARYLYPEFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 578


>gi|257884340|ref|ZP_05663993.1| DNA polymerase III [Enterococcus faecium 1,231,501]
 gi|257820178|gb|EEV47326.1| DNA polymerase III [Enterococcus faecium 1,231,501]
          Length = 1450

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 8/160 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++        +F  F+ P G   S   + L GITDE 
Sbjct: 426 VVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTGITDEM 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +   F +F   ++   +AHNA FD+GF+N    R    P   + +IDTL +
Sbjct: 484 VRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPVIDTLEL 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166
           AR  +P   R  L  L K++G+++   HR+ + A    HL
Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580


>gi|302384787|ref|YP_003820609.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
           WM1]
 gi|302195415|gb|ADL02986.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
           WM1]
          Length = 235

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 86/168 (51%), Gaps = 13/168 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D+ETTGLD K D+IIEIGAV+++    T   FQ F+ P  RK     + L GI+D  
Sbjct: 6   IAVDLETTGLDPKLDKIIEIGAVKVVKGQMTEH-FQTFINPF-RKLESRVIILTGISDRQ 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+  P    +  EF +F   +    + H+  FD  F+      IN+      R IDTL +
Sbjct: 64  LEASPGIGEVIGEFLEF--AEGLPVLGHHVIFDYSFLKR--AAINEGYSFERRGIDTLKL 119

Query: 130 ARR-KHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKM 174
           ARR   P  + +L + C  +GI  T+SHR    AL D+     +Y +M
Sbjct: 120 ARRFMPPEEKKNLGAACGYFGIEQTMSHR----ALADASAAHGLYQEM 163


>gi|56808719|ref|ZP_00366439.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus pyogenes M49 591]
 gi|209560099|ref|YP_002286571.1| DNA polymerase III PolC [Streptococcus pyogenes NZ131]
 gi|209541300|gb|ACI61876.1| DNA polymerase III alpha subunit [Streptococcus pyogenes NZ131]
          Length = 1465

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 83/146 (56%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD+ 
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+D     ++   F DF   +++  +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 486 LQDAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568


>gi|237653313|ref|YP_002889627.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237624560|gb|ACR01250.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 769

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 101/175 (57%), Gaps = 12/175 (6%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNR--TFQVFLCPNGRKNSPEALK 61
           +++   VFD ETTGL+ S+ D II++GA  +L+  K  R  +F+  + P  R  +PE+ K
Sbjct: 575 SELSYTVFDTETTGLNPSQGDEIIQVGATRILN-GKLLRAESFEQLVDPE-RPLAPESAK 632

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT E L+ +P+   +   F  F    +   IAHNA FD+ F+  + ++       P 
Sbjct: 633 IHGITSEMLRGQPTIDKVLPAFHAF--AADTVLIAHNAAFDMRFLQLKEEQTGLRFDHP- 689

Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +IDTL ++   HP+  +  L ++ +R G+TI  R  H AL D+ + ++V++K++
Sbjct: 690 -VIDTLLLSAVVHPNQESHRLEAIAERLGLTIVGR--HTALGDAIVTAEVFLKLI 741


>gi|239626437|ref|ZP_04669468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516583|gb|EEQ56449.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1554

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 98/168 (58%), Gaps = 19/168 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66
           +VFDIETTG   K ++IIEIGAV+++D   T+R F  F+ P    + P   +  KL GI 
Sbjct: 532 VVFDIETTGFSPKKNKIIEIGAVKVVDGKITDR-FSSFVNP----DVPIPFDIEKLTGIN 586

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN--AELQRINKDPLDPSRII 124
           D  +   P    I  +F DF    +A  +AHNA FDVGFI+  AE Q ++ +P     ++
Sbjct: 587 DSMVLPYPKIDVILPQFLDFVG--DAVLVAHNASFDVGFISHFAEEQGLHFNP----TVL 640

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           DT++IAR   P+ +R  L+++ K   I++++   H A+ D+   ++++
Sbjct: 641 DTVTIARLLLPNLNRFKLDTVAKALNISLANH--HRAVDDAGATAEIF 686


>gi|77409408|ref|ZP_00786106.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae COH1]
 gi|77171990|gb|EAO75161.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae COH1]
          Length = 1468

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD  
Sbjct: 431 VVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSDFTTELTGITDNH 488

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++       +  EF +F   Q    +AHNA FDVGF+NA  +R N  PL    +IDTL  
Sbjct: 489 VRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQPVIDTLEF 545

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ + + H
Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH 571


>gi|77405656|ref|ZP_00782744.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae H36B]
 gi|77175729|gb|EAO78510.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae H36B]
          Length = 1468

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD  
Sbjct: 431 VVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSDFTTELTGITDNH 488

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++       +  EF +F   Q    +AHNA FDVGF+NA  +R N  PL    +IDTL  
Sbjct: 489 VRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQPVIDTLEF 545

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ + + H
Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH 571


>gi|325571082|ref|ZP_08146654.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
 gi|325156167|gb|EGC68353.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
          Length = 1449

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 8/160 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGL +  D IIE+ AV  +       +F  F+ P G   S   ++L GITDE 
Sbjct: 424 IVFDVETTGLSAVYDTIIELAAVR-MHKGNVEGSFDEFIDP-GHPLSRTTVELTGITDEM 481

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +   F +F   + A  +AHNA FD+GF+N   ++    P   + +IDTL +
Sbjct: 482 VRGSKSEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLEL 538

Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166
           AR  +P   R  L  L K++G+++   HR+ + A    HL
Sbjct: 539 ARYLYPEFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 578


>gi|187780046|ref|ZP_02996519.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
           15579]
 gi|187773671|gb|EDU37473.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
           15579]
          Length = 855

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 92/168 (54%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+E+TG+++  D I++I  +++ +  +    F+ FL P  +K   ++  +HG +D+F
Sbjct: 496 VVFDVESTGINTTEDEIVQIAGIKINNKGEVIEKFERFLTP--KKYVGDSYLVHGFSDQF 553

Query: 70  LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK+K      +  +F +F   ++   I HN  FD+  +N+ELQR+  +  +     DTL 
Sbjct: 554 LKEKGEDKERVLKDFLEFV--KDTVVIGHNITFDITILNSELQRLGLEKANFKTYYDTLD 611

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IARR +PS  N  L +L K +      +S H A+ D     DV + M+
Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMVML 657


>gi|71904322|ref|YP_281125.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS6180]
 gi|123747742|sp|Q48R90|DPO3_STRPM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|71803417|gb|AAX72770.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS6180]
          Length = 1465

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 83/146 (56%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD+ 
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+D     ++   F DF   +++  +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 486 LQDAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568


>gi|76787214|ref|YP_330464.1| DNA polymerase III PolC [Streptococcus agalactiae A909]
 gi|76562271|gb|ABA44855.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae A909]
          Length = 1468

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD  
Sbjct: 431 VVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSDFTTELTGITDNH 488

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++       +  EF +F   Q    +AHNA FDVGF+NA  +R N  PL    +IDTL  
Sbjct: 489 VRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQPVIDTLEF 545

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ + + H
Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH 571


>gi|167746785|ref|ZP_02418912.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662]
 gi|167653745|gb|EDR97874.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662]
          Length = 1475

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 95/170 (55%), Gaps = 15/170 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK---LHGIT 66
           +VFDIETTG +S+ DRIIEIGAV+++D  +   TF  F+ P      P   K   L  IT
Sbjct: 450 VVFDIETTGFNSQTDRIIEIGAVKVID-GEITETFSEFINP----QIPIPFKITQLTTIT 504

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE + +  +  ++   F +F    ++  +AHNA FD GFI+   +R++ D   P+ I+DT
Sbjct: 505 DEMVMNADTIDAVLPRFLEFCG--DSVLVAHNAGFDTGFIHENAKRLDLD-FHPT-IVDT 560

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L ++R      ++  L++LCK   I +   + H A+ D+     ++IK +
Sbjct: 561 LGLSRSLMTHLAKFTLDNLCKNLNIKL--ETHHRAVDDATATGKIFIKFV 608


>gi|169827163|ref|YP_001697321.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
 gi|168991651|gb|ACA39191.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
          Length = 1468

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 93/167 (55%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++ D    ++ ++ F  P+    S   ++L GITD+ 
Sbjct: 454 VVFDVETTGLSTAYDTIIELAAVKIKDGHVIDK-YESFANPH-HPLSATTIELTGITDDM 511

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P    +  EF  F  +     +AHNA FD+GF+    ++   +      +IDTL +
Sbjct: 512 VRHAPEVEQVIKEFHAFIGDGIV--VAHNASFDIGFLYTGYKKFGLEG-TTHPVIDTLEL 568

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR  +P+ +N  LN+LCK++ I ++    H A+ D+     + ++++
Sbjct: 569 ARLLYPTMKNHRLNTLCKKFNIELTQH--HRAIYDTEATGYLLLQLL 613


>gi|81428867|ref|YP_395867.1| DNA polymerase III PolC [Lactobacillus sakei subsp. sakei 23K]
 gi|123564054|sp|Q38W73|DPO3_LACSS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|78610509|emb|CAI55560.1| DNA-directed DNA polymerase III, polC-type [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 1446

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 6/152 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL +  D IIE+ AV++ D  +   +F  F+ P  R  S    +L  IT+E 
Sbjct: 426 VIFDVETTGLSAVYDSIIELAAVKMRD-GEVVASFDEFIDPE-RPLSAFTTQLTSITNEM 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +      + + + F +F    +A    HN  FD+GF+NA  +R + D +D + +IDTL +
Sbjct: 484 VHGAKKEAEVLAMFKEFTG--DAVLAGHNVSFDMGFLNAGYERNDIDLID-NPVIDTLEL 540

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160
           +R  HP  +N  L+SL KRY I + H  +  A
Sbjct: 541 SRMLHPEYKNHKLDSLTKRYKINLEHHHRANA 572


>gi|228477790|ref|ZP_04062418.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus salivarius SK126]
 gi|228250482|gb|EEK09696.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus salivarius SK126]
          Length = 1464

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL + ++ +I+I A ++    K N    F  F+ P G   S    +L GITD
Sbjct: 427 VVFDVETTGLSAVHNDLIQIAASKM---HKGNIIEQFDEFIDP-GHPLSAFTTELTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +K       +  EF +F   Q    +AHNA FDVGF+NA  +R ++ P     +IDTL
Sbjct: 483 NHVKGAKPLVQVLQEFQEFC--QGTVLVAHNATFDVGFMNANYER-HQLPTISQPVIDTL 539

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+G+ + H
Sbjct: 540 EFARNLYPEYKRHGLGPLTKRFGVALDH 567


>gi|328948895|ref|YP_004366232.1| DNA polymerase III subunit epsilon [Treponema succinifaciens DSM
           2489]
 gi|328449219|gb|AEB14935.1| DNA polymerase III, epsilon subunit [Treponema succinifaciens DSM
           2489]
          Length = 216

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 13/174 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           + FD ETTGL ++ + IIEIGAV+          F + + P      P+ +K L  ITD+
Sbjct: 23  VAFDTETTGLKAEKEFIIEIGAVKFNCDGIIGEPFDILIKPP--IELPQFIKDLTHITDK 80

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P       +F +F   +    +AHNA+FD+GFIN+EL+R +   L P+  IDTL+
Sbjct: 81  MISCCPCAKEAVPQFLNFVGGKETVLVAHNAQFDLGFINSELKRFSHPEL-PNVCIDTLN 139

Query: 129 IARRKHP-------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +R  +P         +  L SL KR+G  I  ++ H A  D+ L  +++ +++
Sbjct: 140 ASRWAYPDFIKEQEKGQYKLQSLAKRFG--IEAKAAHRANDDARLCMEIFKRII 191


>gi|312862610|ref|ZP_07722851.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus vestibularis F0396]
 gi|311101870|gb|EFQ60072.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus vestibularis F0396]
          Length = 1464

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL + ++ +I+I A ++    K N    F  F+ P G   S    +L GITD
Sbjct: 427 VVFDVETTGLSAVHNDLIQIAASKM---HKGNIVEQFDEFIDP-GHPLSAFTTELTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +K       +  EF +F   Q    +AHNA FDVGF+NA  +R ++ P     +IDTL
Sbjct: 483 NHVKGAKPLVQVLQEFQEFC--QGTVLVAHNATFDVGFMNANYER-HQLPTISQPVIDTL 539

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+G+ + H
Sbjct: 540 EFARNLYPEYKRHGLGPLTKRFGVALDH 567


>gi|187778984|ref|ZP_02995457.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC
           15579]
 gi|187772609|gb|EDU36411.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC
           15579]
          Length = 1442

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFD+ETTG  SKND+IIEIGAV+ ++  K    F  F+ P   ++ PE + +L  ITD+
Sbjct: 429 VVFDLETTGFSSKNDKIIEIGAVK-IEKGKIVDRFSEFVNP--ERSIPEKITELTSITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + DK +   I   F +F    ++  +AHNA FDV FIN   + +  +    + ++DT++
Sbjct: 486 MVDDKEAIDKILPRFIEFIG--DSVVVAHNAAFDVSFINKNCKDLKIEF--KNSVMDTVT 541

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++R   P   R  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 542 LSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 585


>gi|237802965|ref|YP_002888159.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231274199|emb|CAX10993.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 250

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 16/168 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +  D ETTGLD K DR+IE  A+     E++D  +       FL    R  S E+ K+H 
Sbjct: 10  VCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVE-------FLIHPERAVSAESQKIHK 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-I 123
           I+D  L+DKP F  +FS    FF E++   + H+  FD+  ++ E +R+ +  L     +
Sbjct: 63  ISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPKHHYV 121

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           IDTL +A+    S  N L +L + +   + H+  H A+ D  +   V+
Sbjct: 122 IDTLRLAKEYGDSPNNSLEALARHF--NVPHQGNHRAMKDVEMNVKVF 167


>gi|28210957|ref|NP_781901.1| DNA polymerase III PolC [Clostridium tetani E88]
 gi|32469700|sp|Q895K2|DPO3_CLOTE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28203396|gb|AAO35838.1| DNA polymerase III, alpha chain [Clostridium tetani E88]
          Length = 1427

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 9/165 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG  +KND+IIEIGAV++ +  K    +  F+ P  R    + ++L GI D  
Sbjct: 414 VVFDIETTGFSNKNDKIIEIGAVKIKE-GKVVDKYSTFVNPE-RIIPEKIIELTGIHDYM 471

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P    +  +F DF   +++  +AHNA FDV FI    +       +P  I+DT+ +
Sbjct: 472 VKDAPKIEEVLPKFIDFI--EDSILVAHNANFDVSFIKKNCKDFGIHFNNP--ILDTIPL 527

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +  +P   R  LN + K  GI + +   H A+ D+    D+ +K
Sbjct: 528 CKFLYPELKRYKLNVVAKHLGIPLLNH--HRAVEDAKTTGDILLK 570


>gi|226948601|ref|YP_002803692.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A2 str. Kyoto]
 gi|226844461|gb|ACO87127.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A2 str. Kyoto]
          Length = 855

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 94/168 (55%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+E+TG++   D I++I  +++ +  +   +FQ FL P  +K+  ++  +HG +D+F
Sbjct: 496 VVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIP--KKSVGDSYLVHGFSDQF 553

Query: 70  LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK+   +   +  +F +F   ++   + HN  FD+  +N+EL+R++ +  +     DTL 
Sbjct: 554 LKENGENKKVVLKDFLEFI--KDTVIVGHNVTFDISILNSELERLSLEKANFKTYYDTLD 611

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IARR +PS  N  L +L K +      +S H A+ D     DV + M+
Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657


>gi|329767541|ref|ZP_08259064.1| DNA polymerase III [Gemella haemolysans M341]
 gi|328835875|gb|EGF85597.1| DNA polymerase III [Gemella haemolysans M341]
          Length = 1449

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 105/167 (62%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL ++ DR+IEI AV++ + ++ + +F+ ++ P  R  S    +L  IT++ 
Sbjct: 430 VVFDVETTGLSAERDRLIEIAAVKVKNGTEID-SFESYINPQ-RPISELITRLTSITNDD 487

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D P    + + F+++ ++ +   +AHNAKFD+GF++   +R+  +  + +  IDTL +
Sbjct: 488 VRDAPLEKEVMTNFYNWLDKDDI-LVAHNAKFDLGFLDTCFERLGLENKNNAS-IDTLFV 545

Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R ++  + R+ L++L K Y + +     H A+ D+   +++++KM+
Sbjct: 546 SRAENKEAKRHGLSNLAKLYKVRLVQH--HRAIYDTKATAEIFVKML 590


>gi|76789273|ref|YP_328359.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13]
 gi|255311354|ref|ZP_05353924.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276]
 gi|255317655|ref|ZP_05358901.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s]
 gi|255348913|ref|ZP_05380920.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70]
 gi|255503453|ref|ZP_05381843.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s]
 gi|255507132|ref|ZP_05382771.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923]
 gi|76167803|gb|AAX50811.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13]
 gi|289525581|emb|CBJ15059.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2]
 gi|296435141|gb|ADH17319.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150]
 gi|296436069|gb|ADH18243.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768]
 gi|296436997|gb|ADH19167.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222]
 gi|296437930|gb|ADH20091.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074]
 gi|296438861|gb|ADH21014.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023]
 gi|297140430|gb|ADH97188.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301]
          Length = 250

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 16/168 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +  D ETTGLD K DR+IE  A+     E++D  +       FL    R  S E+ K+H 
Sbjct: 10  VCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVE-------FLIHPERAVSAESQKIHK 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-I 123
           I+D  L+DKP F  +FS    FF E++   + H+  FD+  ++ E +R+ +  L     +
Sbjct: 63  ISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPKHHYV 121

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           IDTL +A+    S  N L +L + +   + H+  H A+ D  +   V+
Sbjct: 122 IDTLRLAKEYGDSPNNSLEALARHF--NVPHQGNHRAMKDVEMNVKVF 167


>gi|116627026|ref|YP_819645.1| DNA polymerase III PolC [Streptococcus thermophilus LMD-9]
 gi|122268369|sp|Q03MX3|DPO3_STRTD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116100303|gb|ABJ65449.1| DNA polymerase III catalytic subunit, PolC type [Streptococcus
           thermophilus LMD-9]
 gi|312277486|gb|ADQ62143.1| DNA polymerase III polC-type [Streptococcus thermophilus ND03]
          Length = 1464

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL + ++ +I+I A ++    K N    F  F+ P G   S    +L GITD
Sbjct: 427 VVFDVETTGLSAVHNDLIQIAASKM---HKGNIVEQFDEFIDP-GYPLSAFTTELTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +K       +  EF +F   + A  +AHNA FDVGF+NA  +R ++ P     +IDTL
Sbjct: 483 NHVKGAKPLVQVLQEFQEFC--KGAVLVAHNATFDVGFMNANYER-HQLPTISQPVIDTL 539

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+G+ + H
Sbjct: 540 EFARNLYPEYKRHGLGPLTKRFGVALDH 567


>gi|24378642|ref|NP_720597.1| DNA polymerase III PolC [Streptococcus mutans UA159]
 gi|32469722|sp|Q8DWE0|DPO3_STRMU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|24376501|gb|AAN57903.1|AE014864_1 DNA polymerase III, alpha subunit [Streptococcus mutans UA159]
          Length = 1465

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 82/153 (53%), Gaps = 10/153 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKL 62
           N+   +VFD+ETTGL + N+ +I+I A ++    K N    F  F+ P G   S     L
Sbjct: 421 NEATYVVFDVETTGLSAINNDLIQIAASKM---HKGNIVEQFDEFIDP-GHPLSQFTTDL 476

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GITD+ +K     S +  EF  F   Q+   +AHNA FDVGF+NA  +R +  P     
Sbjct: 477 TGITDQHVKGAKPISQVLQEFQSFC--QDTVLVAHNATFDVGFMNANYER-HDLPKITQP 533

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISH 154
           +IDTL  AR  +P   R+ L  L KR+ +++ H
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEH 566


>gi|55820164|ref|YP_138606.1| DNA polymerase III PolC [Streptococcus thermophilus LMG 18311]
 gi|81561132|sp|Q5M6H0|DPO3_STRT2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|55736149|gb|AAV59791.1| DNA polymerase III alpha subunit [Streptococcus thermophilus LMG
           18311]
          Length = 1464

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL + ++ +I+I A ++    K N    F  F+ P G   S    +L GITD
Sbjct: 427 VVFDVETTGLSAVHNDLIQIAASKM---HKGNIVEQFDEFIDP-GYPLSAFTTELTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +K       +  EF +F   + A  +AHNA FDVGF+NA  +R ++ P     +IDTL
Sbjct: 483 NHVKGAKPLVQVLQEFQEFC--KGAVLVAHNATFDVGFMNANYER-HQLPTISQPVIDTL 539

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+G+ + H
Sbjct: 540 EFARNLYPEYKRHGLGPLTKRFGVALDH 567


>gi|55822053|ref|YP_140494.1| DNA polymerase III PolC [Streptococcus thermophilus CNRZ1066]
 gi|81559957|sp|Q5M1Y0|DPO3_STRT1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|55738038|gb|AAV61679.1| DNA polymerase III alpha subunit [Streptococcus thermophilus
           CNRZ1066]
          Length = 1464

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL + ++ +I+I A ++    K N    F  F+ P G   S    +L GITD
Sbjct: 427 VVFDVETTGLSAVHNDLIQIAASKM---HKGNIVEQFDEFIDP-GYPLSAFTTELTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +K       +  EF +F   + A  +AHNA FDVGF+NA  +R ++ P     +IDTL
Sbjct: 483 NHVKGAKPLVQVLQEFQEFC--KGAVLVAHNATFDVGFMNANYER-HQLPTISQPVIDTL 539

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+G+ + H
Sbjct: 540 EFARNLYPEYKRHGLGPLTKRFGVALDH 567


>gi|237804887|ref|YP_002889041.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273187|emb|CAX10100.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 250

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 16/168 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +  D ETTGLD K DR+IE  A+     E++D  +       FL    R  S E+ K+H 
Sbjct: 10  VCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVE-------FLIHPERAVSAESQKIHK 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-I 123
           I+D  L+DKP F  +FS    FF E++   + H+  FD+  ++ E +R+ +  L     +
Sbjct: 63  ISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPKHHYV 121

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           IDTL +A+    S  N L +L + +   + H+  H A+ D  +   V+
Sbjct: 122 IDTLRLAKEYGDSPNNSLEALARHF--NVPHQGNHRAMKDVEMNVKVF 167


>gi|313891131|ref|ZP_07824750.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120494|gb|EFR43614.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 1466

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/146 (37%), Positives = 78/146 (53%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++         F  F+ P G   S    +L GITD  
Sbjct: 429 VVFDVETTGLSAINNDLIQIAASKMYK-GNIIEQFDEFINP-GHPLSTFTTELTGITDNH 486

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L        +   F DF   QN   +AHNA FDVGF+NA  +R ++ PL    +IDTL  
Sbjct: 487 LIGAKPILKVLEAFQDFC--QNTILVAHNASFDVGFMNANYER-HQLPLINQPVIDTLEF 543

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 544 ARNLYPEYKRHGLGPLTKRFQVSLDH 569


>gi|322374172|ref|ZP_08048705.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C150]
 gi|321276877|gb|EFX53949.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C150]
          Length = 1464

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL + ++ +I+I A ++    K N    F  F+ P G   S    +L GITD
Sbjct: 427 VVFDVETTGLSAVHNDLIQIAASKM---HKGNIIEQFDEFIDP-GYPLSAFTTELTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +K       +  EF  F   Q    +AHNA FDVGF+NA  +R N+ P     +IDTL
Sbjct: 483 NHVKGAKPLLQVLQEFQVFC--QGTVLVAHNATFDVGFMNANYER-NQLPTISQPVIDTL 539

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+G+ + H
Sbjct: 540 EFARNLYPEYKRHGLGPLTKRFGVALDH 567


>gi|332653359|ref|ZP_08419104.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Ruminococcaceae bacterium D16]
 gi|332518505|gb|EGJ48108.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Ruminococcaceae bacterium D16]
          Length = 1396

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/126 (42%), Positives = 71/126 (56%), Gaps = 6/126 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FDIETTGLD + + IIEIGA  +L   +   TF  F+ P GR  SPE + L GITDE 
Sbjct: 372 VCFDIETTGLDKRREVIIEIGAA-VLKNGEVTETFNTFVAP-GRILSPEIIHLTGITDEM 429

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   PS       F DF  ++     AHNA+FD+GFI+   ++      +PS  ID+L +
Sbjct: 430 LVGAPSQEEALRAFLDFVGDR--PLAAHNAEFDMGFISTGCRKYGIPFTNPS--IDSLIL 485

Query: 130 ARRKHP 135
           A+   P
Sbjct: 486 AQNLLP 491


>gi|166154751|ref|YP_001654869.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu]
 gi|166155626|ref|YP_001653881.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336025|ref|ZP_07224269.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1]
 gi|165930739|emb|CAP04236.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu]
 gi|165931614|emb|CAP07190.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 250

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 16/168 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +  D ETTGLD K DR+IE  A+     E++D  +       FL    R  S E+ K+H 
Sbjct: 10  VCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVE-------FLIHPERAVSAESQKIHK 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-I 123
           I+D  L+DKP F  +FS    FF E++   + H+  FD+  ++ E +R+ +  L     +
Sbjct: 63  ISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPKHHYV 121

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           IDTL +A+    S  N L +L + +   + H+  H A+ D  +   V+
Sbjct: 122 IDTLRLAKEYGDSPNNSLEALARHF--NVPHQGNHRAMKDVEMNVKVF 167


>gi|167628537|ref|YP_001679036.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1]
 gi|167591277|gb|ABZ83025.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1]
          Length = 255

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 15/176 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVF--LCPNGRKNSPEALK 61
           +VFD ETTGL   ND +I +G V L       ++++     +VF  L    R     A +
Sbjct: 63  VVFDTETTGLSVPNDDVIALGGVALPPGGEGAEWTEDTGKVRVFDRLVNPHRPIPVLARE 122

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           + GI D+ +  +P+   +  +F DF +   A  +AH   FDVGF++  L+ +      P 
Sbjct: 123 ITGIDDDMVFSQPTIYPVLDDFLDFID--GAVLVAHGIAFDVGFLDKYLRPLRTKLYHP- 179

Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +IDT++++R   P  + + L++L   YGIT   R +H AL D+ + +D++  M+V
Sbjct: 180 -VIDTITLSRVLEPFRAEHSLDALVADYGIT--PRRRHSALGDAQMTADLFAAMLV 232


>gi|306832698|ref|ZP_07465835.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
 gi|304425154|gb|EFM28283.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
          Length = 1464

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 6/154 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  N+   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 419 IELNEATYVVFDVETTGLSAVNNDLIQIAASKMYKGNIVEQ-FDEFINP-GHHLSAFTTE 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +++      +   F +F   Q+   +AHNA FDVGF+NA  +R +  P+   
Sbjct: 477 LTGITDNHVRNAKPIEEVLQMFQNFC--QDTVLVAHNATFDVGFMNANYER-HGMPIITQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISH 154
            +IDTL  AR  +P   R+ L  L KR+ +++ H
Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEH 567


>gi|322517665|ref|ZP_08070529.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124]
 gi|322123697|gb|EFX95287.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124]
          Length = 1424

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL + ++ +I+I A ++    K N    F  F+ P G   S    +L GITD
Sbjct: 387 VVFDVETTGLSAVHNDLIQIAASKM---HKGNIVEQFDEFIDP-GHPLSAFTTELTGITD 442

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +K       +  EF +F   Q    +AHNA FDVGF+NA  +R ++ P     +IDTL
Sbjct: 443 NHVKGAKPLVQVLQEFQEFC--QGTVLVAHNATFDVGFMNANYER-HQLPTILQPVIDTL 499

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+G+ + H
Sbjct: 500 EFARNLYPEYKRHGLGPLTKRFGVALDH 527


>gi|323126468|gb|ADX23765.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 1465

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD+ 
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+      ++   F DF   +++  +AHNA FDVGF+NA  +R N  P     +IDTL  
Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHNL-PKITQPVIDTLEF 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568


>gi|256384095|gb|ACU78665.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|256384927|gb|ACU79496.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|296455696|gb|ADH21931.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
          Length = 1482

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 5/169 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FD+ETTGL  + D IIE GA+E    +   +   + + P  +  +    KL  IT+
Sbjct: 434 RMVFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDILIKPKAKLKAFTQ-KLTNITE 492

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L+DKPS    F +  +    ++A  +AHNA FD  F++   +++    L+ + IIDTL
Sbjct: 493 KMLEDKPSIEQAFKQINEII--KDAILVAHNANFDFTFLSYWSEKLGYGKLE-NTIIDTL 549

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +I+R  +P  ++  L SL KR  I+      H    D+ +L+D+Y +M+
Sbjct: 550 TISRIIYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERML 598


>gi|94991249|ref|YP_599349.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10270]
 gi|166217452|sp|Q1JEV4|DPO3_STRPD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94544757|gb|ABF34805.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10270]
          Length = 1465

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/146 (36%), Positives = 83/146 (56%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD+ 
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+D     ++   F DF   +++  +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 486 LQDAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568


>gi|251781676|ref|YP_002995978.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390305|dbj|BAH80764.1| DNA polymerase III subunit alpha [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 1465

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD+ 
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+      ++   F DF   +++  +AHNA FDVGF+NA  +R N  P     +IDTL  
Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHNL-PKITQPVIDTLEF 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568


>gi|163791589|ref|ZP_02185990.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carnobacterium sp. AT7]
 gi|159873138|gb|EDP67241.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carnobacterium sp. AT7]
          Length = 1395

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 102/186 (54%), Gaps = 15/186 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + IIE+ AV++    K N   +F+ F+ P G   S   + L GITD
Sbjct: 427 VVFDVETTGLSAVYNSIIELSAVKM---HKGNIIESFEQFIDP-GHPLSQTTINLTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDT 126
           E ++   S   + + F +F    ++  +AHNA FD+GF+N    + N  D  +P  +IDT
Sbjct: 483 EMVQGSKSEEEVLTLFKEFAG--DSILVAHNASFDMGFLNTSNAKHNIPDAENP--VIDT 538

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           L ++R  HP  ++  LN+L K+YG+ +   HR+   A    HL   V++K       I+F
Sbjct: 539 LELSRFLHPQFKSHRLNTLAKKYGVNLEQHHRAIFDAETTGHLCW-VFLKEAREEHDIHF 597

Query: 184 GFKTNE 189
             + NE
Sbjct: 598 QDQLNE 603


>gi|15605265|ref|NP_220051.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           D/UW-3/CX]
 gi|3328974|gb|AAC68138.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX]
 gi|297748666|gb|ADI51212.1| Exonuclease family protein [Chlamydia trachomatis D-EC]
 gi|297749546|gb|ADI52224.1| Exonuclease family protein [Chlamydia trachomatis D-LC]
          Length = 250

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 16/168 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +  D ETTGLD K DR+IE  A+     E++D  +       FL    R  S E+ K+H 
Sbjct: 10  VCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVE-------FLIHPERAVSAESQKIHK 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-I 123
           I+D  L+DKP F  +FS    FF E++   + H+  FD+  ++ E +R+ +  L     +
Sbjct: 63  ISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPKHHYV 121

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           IDTL +A+    S  N L +L + +   + H+  H A+ D  +   V+
Sbjct: 122 IDTLRLAKGYGDSPNNSLEALARHF--NVPHQGNHRAMKDVEMNVKVF 167


>gi|167770615|ref|ZP_02442668.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM
           17241]
 gi|167667210|gb|EDS11340.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM
           17241]
          Length = 1445

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGL +  +RI EIGAV+L +    +R F  F+ P  R   P+  +L GITD+ 
Sbjct: 427 IVFDLETTGLSAATERITEIGAVKLRNGEIVDR-FNTFVNPE-RSIPPKITELTGITDDD 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P       +F+ F    +A  IAHNA FD  F+    +R   +       IDT+ +
Sbjct: 485 VRGAPLEGEALRQFYAFCGGSSAVLIAHNAPFDTSFLRQCARRCGMEY--NFTAIDTVVL 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R   P   ++ L+ + K  G  +   + H A  D+ +L+ +YI+MM
Sbjct: 543 SRSLFPELKKHKLDIVAKHLG--LGEFNHHRACDDAEMLARIYIRMM 587


>gi|19746871|ref|NP_608007.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS8232]
 gi|24418360|sp|Q8NZB5|DPO3_STRP8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|19749113|gb|AAL98506.1| DNA polymerase III alpha chain [Streptococcus pyogenes MGAS8232]
          Length = 1465

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD+ 
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+      ++   F DF   +++  +AHNA FDVGF+NA  +R N  P     +IDTL  
Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHNL-PKITQPVIDTLEF 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568


>gi|28378678|ref|NP_785570.1| DNA polymerase III PolC [Lactobacillus plantarum WCFS1]
 gi|254556876|ref|YP_003063293.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300768189|ref|ZP_07078094.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180817|ref|YP_003924945.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|32469698|sp|Q88VK2|DPO3_LACPL RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28271514|emb|CAD64419.1| DNA-directed DNA polymerase III, alpha chain PolC-type
           [Lactobacillus plantarum WCFS1]
 gi|254045803|gb|ACT62596.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300494253|gb|EFK29416.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046308|gb|ADN98851.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 1437

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD ETTGL +  DR+IE+ AV+++  +  ++ F+ F+ P G   S     L  ITD+ 
Sbjct: 423 VIFDTETTGLSAIYDRVIELSAVKMVKGNVVDQ-FEEFIDP-GFHLSETTTNLTSITDDM 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +F  F +F+   +A  + HN  FD+GF+N    R +  P+  + IIDTL++
Sbjct: 481 VRGSKSEEEVFKLFREFYG--DAIVVGHNVTFDIGFMNTGYARHHMGPIT-NPIIDTLTL 537

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           AR  +P+ R   LN+L K++ + + H   H A+ D+
Sbjct: 538 ARWLYPNLRGYRLNTLAKKFNVNLEHH--HRAIYDA 571


>gi|146276555|ref|YP_001166714.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554796|gb|ABP69409.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 695

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 10/194 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61
           R   +  +VFD ETTGL    D I++I AV +++  +     F   + P  R   P + +
Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVFDTLVNPR-RPIPPSSTE 548

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGITD  + D P  + +  +F  F   + A  +AHNA FD+ F+      I++   +P 
Sbjct: 549 VHGITDAMVADAPDMTEVGRQFHKF--AEGAVLVAHNAPFDMEFLRRAELLIDRRFDNP- 605

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK---MMVG 177
            I+DT+ ++      +  + L++L  R GITI   ++H A+ D+   +D ++K   M+ G
Sbjct: 606 -ILDTVLLSAVLFGQTEVHSLDALAHRLGITIPEEARHTAIGDTVATADAFLKLLPMLQG 664

Query: 178 GSQINFGFKTNEDR 191
                FG   +E R
Sbjct: 665 RGFETFGAVLSEVR 678


>gi|327441015|dbj|BAK17380.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046]
          Length = 1443

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 94/167 (56%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTG  +  D IIE+ AV++ +  +   TF+ F  P+ RK + + ++L  ITD+ 
Sbjct: 430 IVFDVETTGFSNVYDTIIELAAVKIKN-GQVIDTFERFSNPH-RKLTAKIIELTHITDDM 487

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L + P  S +  EF DF    +   +AHNA FD+GF+    +    +   P   IDT+ +
Sbjct: 488 LVNAPELSDVIREFHDFIG--DGVVVAHNAAFDLGFLYVAYKNAGIEVRHPG--IDTVEL 543

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R  +P  + ++L +L K+Y I ++    H A+ D+    ++++ ++
Sbjct: 544 SRLVNPGQKSHNLKTLTKKYNIELTQH--HRAIYDTEATGELFLHLL 588


>gi|153939167|ref|YP_001390679.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum F str. Langeland]
 gi|152935063|gb|ABS40561.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum F str. Langeland]
          Length = 855

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+E+TG++   D I++I  +++ +  +   +FQ FL P  +K+  ++  +HG +D+F
Sbjct: 496 VVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIP--KKSVGDSYLVHGFSDQF 553

Query: 70  LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK+   +   +  +F +F   ++   + HN  FD+  +N+EL+R++ +        DTL 
Sbjct: 554 LKENGENKKVVLKDFLEFI--KDTVIVGHNVTFDISILNSELERLSLEKASFKTYYDTLD 611

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IARR +PS  N  L +L K +      +S H A+ D     DV + M+
Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657


>gi|170754352|ref|YP_001780953.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum B1 str. Okra]
 gi|169119564|gb|ACA43400.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum B1 str. Okra]
          Length = 855

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+E+TG++   D I++I  +++ +  +   +FQ FL P  +K+  ++  +HG +D+F
Sbjct: 496 VVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIP--KKSVGDSYLVHGFSDQF 553

Query: 70  LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK+   +   +  +F +F   ++   + HN  FD+  +N+EL+R++ +        DTL 
Sbjct: 554 LKENGENKKVVLKDFLEFI--KDTVIVGHNVTFDISILNSELERLSLEKASFKTYYDTLD 611

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IARR +PS  N  L +L K +      +S H A+ D     DV + M+
Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657


>gi|25011356|ref|NP_735751.1| hypothetical protein gbs1312 [Streptococcus agalactiae NEM316]
 gi|24412894|emb|CAD46971.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 604

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 107/191 (56%), Gaps = 12/191 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           K R I FDIET GL+S+ DRI+E+GAV L +  K   +++  +  N + N S +  +L+ 
Sbjct: 50  KNRFIAFDIETPGLNSQQDRIVEVGAV-LFENGKVVDSYESLV--NAKVNISADVTRLNN 106

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           IT+  +K+ PS + ++ E  +F  +         AHNAKFD+GF+   L R+  +     
Sbjct: 107 ITNRMIKNAPSENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLGYN--GEI 164

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKMMVGG 178
           + +DTLS++R+     RN   N++ + + +    SHR+K  A++  ++L+ ++  +    
Sbjct: 165 KYLDTLSLSRKNVKGLRNYKQNTVAEYFNLQNKNSHRAKSDAIICGNILTKLFFIIENQK 224

Query: 179 SQINFGFKTNE 189
           S+ +F  K N+
Sbjct: 225 SRKSFSSKNNK 235


>gi|288959104|ref|YP_003449445.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum
           sp. B510]
 gi|288911412|dbj|BAI72901.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum
           sp. B510]
          Length = 702

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 95/174 (54%), Gaps = 10/174 (5%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKL 62
           +++  +VFD ETTGL  S  D I++I AV ++     T  TF + + P  R   PE++  
Sbjct: 505 DRLHYVVFDTETTGLSPSAGDEIVQIAAVRIVGGRILTGETFNMLVDPK-RPIPPESIPF 563

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGITD  +  KP+  ++  +F  F +   A  +AHNA FD+ F+  + +R      D   
Sbjct: 564 HGITDAMVAGKPTIDTVLPQFRSFVS--GAVLVAHNAAFDLKFLKMK-ERAAGVTFD-CP 619

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++DT+ ++R    +   + L+ + +R GI +  R  H AL DS + + V+++M+
Sbjct: 620 VLDTMLLSRMLLGNDGDHTLDGIAQRLGIAVVDR--HTALGDSLVTAAVFLRMI 671


>gi|42560899|ref|NP_975350.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|42492396|emb|CAE76992.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320644|gb|ADK69287.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           mycoides subsp. mycoides SC str. Gladysdale]
          Length = 1482

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 5/169 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FD+ETTGL  + D IIE GA+E    +   +   + + P  +  +    KL  IT+
Sbjct: 434 RMVFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDILIKPKTKLKAFTQ-KLTNITE 492

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L+DKPS    F +  +    ++A  +AHNA FD  F++   +++    L+ + IIDTL
Sbjct: 493 KMLEDKPSIEQAFKQINEII--KDAILVAHNANFDFTFLSYWSEKLGYSKLE-NTIIDTL 549

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +I+R  +P  ++  L SL KR  I+      H    D+ +L+D+Y +M+
Sbjct: 550 TISRIIYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERML 598


>gi|312960550|ref|ZP_07775056.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
 gi|311285076|gb|EFQ63651.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
          Length = 142

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 3/116 (2%)

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++
Sbjct: 15  ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLS 74

Query: 183 FGFKTNEDRFFKEEKKTVPN-ISLLKRDKPLFT--RITKEELDEHDKTIQTLGKNA 235
                ++     E     P+ I  L  D+   T  R +++++ EH   ++ + K+A
Sbjct: 75  LAGNASDGSGSAEGSGNRPSEIRRLPADRKPTTIIRASEQDMAEHAARLEAIAKSA 130


>gi|289424040|ref|ZP_06425828.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptostreptococcus anaerobius 653-L]
 gi|289155559|gb|EFD04236.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptostreptococcus anaerobius 653-L]
          Length = 1440

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 94/167 (56%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL   +D + EIGAV++ +    + +F  F+ P     S +  +L  IT+E 
Sbjct: 427 VVFDIETTGLSPHSDNLTEIGAVKVQNCEIVD-SFSTFVNPK-MDISYQIQELTRITNEM 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD PS      EF +F   +++  +AHNA FD GFI  + Q++  +       +DTL++
Sbjct: 485 VKDAPSLEEALPEFLEF--AKDSVLVAHNADFDTGFIYQKCQQLGLEY--NFEKVDTLTL 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR  + +  R  L+ +CK  G+ ++    H A+ D+   ++V+IK +
Sbjct: 541 ARIINTNLKRFSLDKVCKEMGVVLA--GHHRAVNDAQATAEVFIKYL 585


>gi|254302688|ref|ZP_04970046.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148322880|gb|EDK88130.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 1454

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 24/207 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL+S  + IIEIGAV++      +R  Q  L   GR       ++  ITDE 
Sbjct: 428 VVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQ--LINPGRPIPYHITEITSITDEQ 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128
           + ++P    +  +F DF    +A  +AHNA FD+GFI  ++++ +N D    S +IDTL 
Sbjct: 486 VANEPKIDEVIGKFIDFVG--DAVLVAHNAPFDMGFIKRDVKKYLNIDL--QSSVIDTLQ 541

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179
           +AR   P   +  L  L K  G+ +     H A+ DS   ++++I        K +    
Sbjct: 542 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLDKYKEKGLEYIK 599

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLL 206
            IN GF+ N       +K+++ NI +L
Sbjct: 600 DINVGFEVN------VKKQSLKNIMVL 620


>gi|254519350|ref|ZP_05131406.1| helicase [Clostridium sp. 7_2_43FAA]
 gi|226913099|gb|EEH98300.1| helicase [Clostridium sp. 7_2_43FAA]
          Length = 872

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+E+TG D   D II+I A+++  Y +   +F+ FL    +K+   + K+HG +DEF
Sbjct: 498 IVFDVESTGTDVTEDEIIQIAAIKINKYGEVIDSFEKFL--KNKKSVESSFKVHGFSDEF 555

Query: 70  LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L +K      +  EF DF   + A  + HN ++D+  +N+EL R N D        DTL 
Sbjct: 556 LNEKGEDKKKVLKEFIDF--SKGAVIVGHNVQYDINILNSELYRNNLDGTKFKAFYDTLD 613

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           I RR + S  N  L +L K +     ++  H A+ D    SD+ ++ +
Sbjct: 614 IYRRFYTSLPNYKLETLSKIF--ETKNKPSHDAMDDILATSDLLVRAI 659


>gi|331703357|ref|YP_004400044.1| DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. capri
           LC str. 95010]
 gi|328801912|emb|CBW54065.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 1482

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 5/169 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FD+ETTGL  + D IIE GA+E    +   +   + + P  +  +    KL  IT+
Sbjct: 434 RMVFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDILIKPKTKLKAFTQ-KLTNITE 492

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L+DKPS    F +  +    ++A  +AHNA FD  F++   +++    L+ + IIDTL
Sbjct: 493 KMLEDKPSIEQAFKQINEII--KDAILVAHNANFDFTFLSYWSEKLGYGKLE-NTIIDTL 549

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +I+R  +P  ++  L SL KR  I+      H    D+ +L+D+Y +M+
Sbjct: 550 TISRIIYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERML 598


>gi|148379300|ref|YP_001253841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931399|ref|YP_001383675.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936519|ref|YP_001387223.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. Hall]
 gi|148288784|emb|CAL82868.1| putative DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927443|gb|ABS32943.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932433|gb|ABS37932.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. Hall]
          Length = 855

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+E+TG+++  D I++I  +++ +  +   +FQ FL P  +K   ++  +HG +D+F
Sbjct: 496 VVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLTP--KKFVGDSYLVHGFSDQF 553

Query: 70  LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK+   +   +  +F +F   ++   + HN  FD+  +N+EL+R++ +        DTL 
Sbjct: 554 LKENGENKKVVLKDFLEFI--KDTVIVGHNVAFDISILNSELERLSLEKASFKTYYDTLD 611

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IARR +P+  N  L +L K +      +S H A+ D     DV + M+
Sbjct: 612 IARRFYPNLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657


>gi|157961820|ref|YP_001501854.1| DNA polymerase III subunit epsilon [Shewanella pealeana ATCC
           700345]
 gi|157846820|gb|ABV87319.1| DNA polymerase III, epsilon subunit [Shewanella pealeana ATCC
           700345]
          Length = 215

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 19/173 (10%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL  ++ DR IEIGAV L D    +R FQ  + P G + S       GI++ 
Sbjct: 19  IVLDFETTGLSPTQGDRAIEIGAVMLKDGKVVDR-FQQLMNP-GFRISGFIESYTGISNA 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D PS   + ++F DF  + N   +AHNA FD  F++AEL+RIN   L   +   ++ 
Sbjct: 77  MLADAPSCEEVMAQFADFIGDYN--LVAHNASFDQRFLDAELKRINCHYL--GQFACSML 132

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSK------HGALLDSHLLSDVYIKMM 175
           IARR + ++ N       + G  +S+++       H AL DS + + +++ M+
Sbjct: 133 IARRLYQAAPN------HKLGSLVSYKNIQHDGVFHRALADSEMTASLWLAML 179


>gi|295696154|ref|YP_003589392.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
 gi|295411756|gb|ADG06248.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
          Length = 1428

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 18/154 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +VFD ETTGL+++   +IEI AV     EL+D+  +       L   G   SP+  +L G
Sbjct: 417 VVFDTETTGLNAREHTLIEIAAVKVRGGELVDHYTS-------LIDPGVPISPKIQELTG 469

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT + +K +P  S +   F  F     A  +AHNA+FD+GF+ +  +++ + P D   ++
Sbjct: 470 ITSDMVKGQPGLSEVLEAFRKF--AAGAVLVAHNAEFDMGFLQSAARKLGQPPWDHP-VL 526

Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITI--SHR 155
           DTL++AR  +P  RN  L +L +++ + +   HR
Sbjct: 527 DTLALARVLYPRERNHRLKTLTQKFNVELVNHHR 560


>gi|167624226|ref|YP_001674520.1| DNA polymerase III subunit epsilon [Shewanella halifaxensis
           HAW-EB4]
 gi|167354248|gb|ABZ76861.1| DNA polymerase III, epsilon subunit [Shewanella halifaxensis
           HAW-EB4]
          Length = 213

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 11/169 (6%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL  ++ DR IEIGAV L D    +R FQ  + P G + S       GI++E
Sbjct: 17  IVLDFETTGLSPNQGDRAIEIGAVMLKDGKVIDR-FQQLMNP-GFRVSGFIENYTGISNE 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D  S  ++ ++F DF  + N   +AHNA FD  F++AEL R+N +   P +   ++ 
Sbjct: 75  MLSDAKSCETVMTQFADFIGDYN--LVAHNASFDQRFLDAELSRVNCNY--PGQFACSML 130

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSK-HGALLDSHLLSDVYIKMM 175
           IARR +  + N  L SL   +   I H    H AL DS + +D+++ M+
Sbjct: 131 IARRLYQDAPNHKLGSLI--HYKNIQHDGVFHRALADSEMTADLWLVML 177


>gi|300856800|ref|YP_003781784.1| putative DNA polymerase III [Clostridium ljungdahlii DSM 13528]
 gi|300436915|gb|ADK16682.1| predicted DNA polymerase III [Clostridium ljungdahlii DSM 13528]
          Length = 362

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 11/173 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +  D ETTGLD +ND+I+EIGAV+  D  +T++ F   + P+   + PE + K++GI D 
Sbjct: 62  VALDFETTGLDYRNDKIVEIGAVKYKDEKETDK-FHFLINPHI--HIPEKITKINGIEDS 118

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD PS + +  +  DF    N   + HNA+FD+ F++   + ++ +    + +IDTLS
Sbjct: 119 MVKDSPSINEVIPKLIDFMG--NLPIVVHNARFDIDFLD---ENMSDNKYRGNSVIDTLS 173

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           I+R+   +  N      K Y + I   S H A+ D+ + +++Y+K    G  I
Sbjct: 174 ISRKMFENIDNHRLQTIKDY-LKIDLNS-HRAIDDAKVAAEIYLKYCREGYPI 224


>gi|307945225|ref|ZP_07660561.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium
           sp. TrichSKD4]
 gi|307771098|gb|EFO30323.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium
           sp. TrichSKD4]
          Length = 470

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 7/188 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD ETTGL    D I++IGAV +++           L   GR   P + K+HGITDE +
Sbjct: 280 VFDTETTGLMPNKDEIVQIGAVRVVNGKIVPGEVIDQLVDPGRPIPPASTKVHGITDEMV 339

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K  P   +   +F  F   +++  +AHNA FD+ F++   +    +   P  I+DT+ ++
Sbjct: 340 KGAPDAVTSVQQFHTF--AKDSVIVAHNAPFDMAFLHRYGRESGLEWDHP--IMDTVLLS 395

Query: 131 RRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
              + ++  + L++LC R G+TI    +H AL D+   ++V   ++     I+ G+KT  
Sbjct: 396 AVVYGTTEIHTLDALCDRLGVTIPVELRHTALGDAQATAEVLCHLL--PILISKGYKTFG 453

Query: 190 DRFFKEEK 197
           D   +  K
Sbjct: 454 DVLTQTRK 461


>gi|166032729|ref|ZP_02235558.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC
           27755]
 gi|166027086|gb|EDR45843.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC
           27755]
          Length = 1521

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           +VFD+ETTG  S  D+IIEIGAV++ +   T++ +  F+ P  +   P    +L  ITDE
Sbjct: 479 VVFDLETTGFSSAKDKIIEIGAVKVENGEITDK-YSTFVNP--KIPIPFRITQLTSITDE 535

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P   +I  +F  F    +A  +AHNA FDV FI    ++   +P   S  +DT+ 
Sbjct: 536 MVMESPEIETILPQFLKFVG--DAVLVAHNASFDVSFIEENCRQQGIEPDFTS--VDTVG 591

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   P+ S+  LN + K   + IS    H A+ D+ + +++Y+K +
Sbjct: 592 LARVLLPTLSKFKLNVVAK--ALNISQEHHHRAVDDARVTAEIYVKFI 637


>gi|126734517|ref|ZP_01750263.1| exonuclease, putative [Roseobacter sp. CCS2]
 gi|126715072|gb|EBA11937.1| exonuclease, putative [Roseobacter sp. CCS2]
          Length = 461

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 11/156 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGLD + D ++++GAV +++     + TF+  + P GR    ++ K+HGI+D+
Sbjct: 274 VVFDSETTGLDPQKDDVVQLGAVRIVNGRIIASETFEALVNP-GRPIPAQSTKVHGISDD 332

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F+ +   F  +    NA  +AHNA FD+ F+N        D +  + ++DT+ 
Sbjct: 333 MVAGAPDFTVVRDNFQRY--AANAVLVAHNAPFDMAFLN------RSDAIFQNPVMDTVH 384

Query: 129 I-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A     S+ + L++LC R  ++I    +H AL D
Sbjct: 385 LSAIVFGGSAEHTLDALCARLEVSIPEDLRHTALGD 420


>gi|257087409|ref|ZP_05581770.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|256995439|gb|EEU82741.1| DNA polymerase III [Enterococcus faecalis D6]
          Length = 1439

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 470

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 471 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 527

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 528 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 563


>gi|188997343|ref|YP_001931594.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932410|gb|ACD67040.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 205

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 9/167 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL+ K   IIEI A++ ++ S     F   + P+         KL GIT+  +
Sbjct: 13  VVDLETTGLNPKTSEIIEIAAIK-VEGSVITEKFHTLVKPSIGFIPEHITKLTGITNPLV 71

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIIDTLSI 129
            DKP    +F  F +F   +N+  IAHNAKFD+ F+N A LQ   K   +P  +I TL +
Sbjct: 72  IDKPKIEQVFPHFLEF--TKNSIIIAHNAKFDISFLNEASLQLTGKLIQNP--VICTLVL 127

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A R  P  ++  L +L   Y   I +  KH AL D+ +  +++ K +
Sbjct: 128 ANRLFPDLKSKSLTNLA--YHFNIPYHRKHRALADAEVTYELFKKFV 172


>gi|315150171|gb|EFT94187.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0012]
          Length = 1451

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575


>gi|293383603|ref|ZP_06629513.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|293387284|ref|ZP_06631841.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|312906153|ref|ZP_07765165.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|312909498|ref|ZP_07768353.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis DAPTO 516]
 gi|291079115|gb|EFE16479.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|291083321|gb|EFE20284.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|310627799|gb|EFQ11082.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|311290171|gb|EFQ68727.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis DAPTO 516]
          Length = 1451

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575


>gi|255972152|ref|ZP_05422738.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|257079586|ref|ZP_05573947.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|257082034|ref|ZP_05576395.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|257084659|ref|ZP_05579020.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257416589|ref|ZP_05593583.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
 gi|255963170|gb|EET95646.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|256987616|gb|EEU74918.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|256990064|gb|EEU77366.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|256992689|gb|EEU79991.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257158417|gb|EEU88377.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
          Length = 1439

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 470

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 471 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 527

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 528 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 563


>gi|315164832|gb|EFU08849.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1302]
          Length = 1451

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575


>gi|307287733|ref|ZP_07567776.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|306501471|gb|EFM70774.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|315032873|gb|EFT44805.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0017]
          Length = 1451

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575


>gi|296329433|ref|ZP_06871922.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296153442|gb|EFG94272.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 1454

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 24/207 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL+S  + IIEIGAV++      +R  Q  L   GR       ++  ITDE 
Sbjct: 428 VVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQ--LINPGRPIPYHITEITSITDEQ 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128
           + ++P    +  +F DF    +A  +AHNA FD+GFI  ++++ +N D      +IDTL 
Sbjct: 486 VANEPKIDEVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKKYLNIDY--QCSVIDTLQ 541

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179
           +AR   P   +  L  L K  G+ +     H A+ DS   ++++I        K +    
Sbjct: 542 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLDKYKEKGLEYMK 599

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLL 206
            IN GF+ N       +K+++ NI +L
Sbjct: 600 DINVGFEVN------VKKQSLKNIMVL 620


>gi|21314372|gb|AAM46912.1|AF508325_1 DNA polymerase III C [Enterococcus faecalis]
          Length = 1439

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 470

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 471 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 527

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 528 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 563


>gi|312899805|ref|ZP_07759124.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
 gi|311293055|gb|EFQ71611.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
          Length = 1451

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575


>gi|256956660|ref|ZP_05560831.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|256947156|gb|EEU63788.1| DNA polymerase III [Enterococcus faecalis DS5]
          Length = 1439

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 470

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 471 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 527

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 528 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 563


>gi|256763072|ref|ZP_05503652.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256963554|ref|ZP_05567725.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|256684323|gb|EEU24018.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256954050|gb|EEU70682.1| DNA polymerase III [Enterococcus faecalis HIP11704]
          Length = 1439

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 470

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 471 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 527

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 528 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 563


>gi|237742507|ref|ZP_04572988.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
 gi|229430155|gb|EEO40367.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
          Length = 1449

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 107/207 (51%), Gaps = 24/207 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FDIETTGL+S  + IIEIGAV++      +R  Q  L   GR       ++  ITDE 
Sbjct: 423 VIFDIETTGLNSHTNEIIEIGAVKIKSGRIVDRYSQ--LINPGRPIPYHITEITSITDEQ 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128
           + ++P  + +  +F DF    +A  +AHNA FD+GFI  ++++ +N D      +IDTL 
Sbjct: 481 VANEPKINEVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKYLNIDY--QCSVIDTLQ 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179
           +AR   P   +  L  L K  G+ +     H A+ DS   ++++I        K +    
Sbjct: 537 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEKGLEYMK 594

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLL 206
            IN GF+ N       +K+++ NI +L
Sbjct: 595 DINIGFEVN------VKKQSLKNIMVL 615


>gi|225163449|ref|ZP_03725765.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
 gi|224801949|gb|EEG20229.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
          Length = 197

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 98/175 (56%), Gaps = 9/175 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65
           M  ++FD+ETTG   + + II+I AV L+D   ++ TF  ++ P  R+  P+ + +L GI
Sbjct: 1   MNLVIFDLETTGFSPRWNDIIQIAAVRLVDGRISDETFSTYVSP--RRPVPDHITELTGI 58

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNA-KFDVGFINAELQRINKDPLDPSRI 123
           TD  + D P  S     F  F  +      +AHN  +FD+ FI AE   ++  P+ P R 
Sbjct: 59  TDADVADAPETSDALRAFARFVGDVGPTTLVAHNGHRFDMRFI-AESCTLHGLPMRPIRF 117

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMM 175
           ID++ ++++  P+ S ++L+ + +R GI   I+   +H A  D HLL++   +M+
Sbjct: 118 IDSIWLSKKLWPAESLHNLDVIVERLGIETGITGHRRHDARADVHLLANAVRRMI 172


>gi|237794676|ref|YP_002862228.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum Ba4 str. 657]
 gi|229260614|gb|ACQ51647.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum Ba4 str. 657]
          Length = 855

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+E+TG+++  D I++I  +++ +  +   +FQ FL P  +K+  ++  +HG +D+F
Sbjct: 496 VVFDVESTGINTTEDEIVQIAGIKINNKGEAIESFQRFLNP--KKSVGDSYLVHGFSDQF 553

Query: 70  LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK+   +   +  +F  F   ++   + HN  FD+  +N+EL+R++ +        DTL 
Sbjct: 554 LKENGENKKVVLKDFLKFI--KDTVIVGHNVTFDISILNSELERLSLEKASFKTYYDTLD 611

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IARR +PS  N  L +L K +      +S H A+ D     D+ + M+
Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDILMVML 657


>gi|46202557|ref|ZP_00053013.2| COG5002: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 711

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 92/167 (55%), Gaps = 10/167 (5%)

Query: 10  IVFDIETTGL-DSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD ETTGL  S+ D+I+ I  V +++    +  +F   + P GR    E+++ HGITD
Sbjct: 519 VVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNP-GRSIPAESIRYHGITD 577

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + DKP    +  +F  +    +A  +AHNA FD+ F+    + +      P  ++DT+
Sbjct: 578 EMVIDKPPAGVVLPQFRSYV--ADAVLVAHNAAFDLKFLRMREKEMGVRFDSP--VLDTM 633

Query: 128 SIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++     P + + L+ +C+RYGI I+ R  H AL DS + + V ++
Sbjct: 634 ILSNFLDGPEAGHSLDDICERYGIEITDR--HTALGDSMVTAAVLLR 678


>gi|315170319|gb|EFU14336.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1342]
          Length = 1451

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575


>gi|312903703|ref|ZP_07762877.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|310632895|gb|EFQ16178.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|315578694|gb|EFU90885.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0630]
          Length = 1451

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575


>gi|307285835|ref|ZP_07565969.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
 gi|306502596|gb|EFM71863.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
          Length = 1451

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575


>gi|256961318|ref|ZP_05565489.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|256951814|gb|EEU68446.1| DNA polymerase III [Enterococcus faecalis Merz96]
          Length = 1439

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 470

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 471 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 527

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 528 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 563


>gi|29376875|ref|NP_816029.1| DNA polymerase III PolC [Enterococcus faecalis V583]
 gi|227519898|ref|ZP_03949947.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227553915|ref|ZP_03983962.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|29344340|gb|AAO82099.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis V583]
 gi|227072692|gb|EEI10655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227176901|gb|EEI57873.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|315574385|gb|EFU86576.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309B]
 gi|315580141|gb|EFU92332.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309A]
          Length = 1451

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575


>gi|315025440|gb|EFT37372.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2137]
          Length = 1451

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575


>gi|307271493|ref|ZP_07552765.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
 gi|306511765|gb|EFM80763.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
          Length = 1451

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575


>gi|229545206|ref|ZP_04433931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300860665|ref|ZP_07106752.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis TUSoD Ef11]
 gi|229309751|gb|EEN75738.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300849704|gb|EFK77454.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis TUSoD Ef11]
 gi|315035641|gb|EFT47573.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0027]
          Length = 1451

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575


>gi|229549448|ref|ZP_04438173.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256853720|ref|ZP_05559085.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257421977|ref|ZP_05598967.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294779462|ref|ZP_06744860.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis PC1.1]
 gi|307270863|ref|ZP_07552150.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|307277206|ref|ZP_07558310.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|307291051|ref|ZP_07570937.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|312953417|ref|ZP_07772257.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|229305685|gb|EEN71681.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256710663|gb|EEU25706.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257163801|gb|EEU93761.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294453468|gb|EFG21872.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis PC1.1]
 gi|306497900|gb|EFM67431.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|306506136|gb|EFM75302.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|306512776|gb|EFM81421.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|310628626|gb|EFQ11909.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|315030983|gb|EFT42915.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4000]
 gi|315146013|gb|EFT90029.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2141]
 gi|315146659|gb|EFT90675.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4244]
 gi|315152085|gb|EFT96101.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0031]
 gi|315155311|gb|EFT99327.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0043]
 gi|315159111|gb|EFU03128.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0312]
 gi|315161731|gb|EFU05748.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0645]
 gi|315166431|gb|EFU10448.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1341]
 gi|315173645|gb|EFU17662.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1346]
 gi|323481337|gb|ADX80776.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis 62]
 gi|327535664|gb|AEA94498.1| DNA polymerase III PolC [Enterococcus faecalis OG1RF]
 gi|329569948|gb|EGG51703.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467]
          Length = 1451

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575


>gi|320449814|ref|YP_004201910.1| DNA polymerase III subunit epsilon [Thermus scotoductus SA-01]
 gi|320149983|gb|ADW21361.1| DNA polymerase III, subunit epsilon [Thermus scotoductus SA-01]
          Length = 637

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 16/168 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
            FD+ETTGLD + D II +GAV +L   KT    +VF  L   GR     + ++HG+T E
Sbjct: 455 AFDLETTGLDPEKDAIIALGAVHIL--GKTVLRHEVFEALVNPGRPIPKASTEVHGLTWE 512

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK+KP    +   F  F   ++   +AHN  FD+ F    L+R+    +D   ++DTL 
Sbjct: 513 MLKEKPKLEEVLPGFRLFL--EDTVLLAHNGAFDMAF----LRRVG---IDQPPLVDTLL 563

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++    P  ++  L +L +R+G+ +  R  H AL D+ + ++V+  M+
Sbjct: 564 LSYLLFPDLQDHRLETLAERFGVPVIGR--HTALGDALMTAEVFAGMV 609


>gi|257419836|ref|ZP_05596830.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|257161664|gb|EEU91624.1| DNA polymerase III [Enterococcus faecalis T11]
          Length = 1439

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 470

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 471 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 527

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 528 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 563


>gi|257090543|ref|ZP_05584904.1| DNA polymerase III polC [Enterococcus faecalis CH188]
 gi|256999355|gb|EEU85875.1| DNA polymerase III polC [Enterococcus faecalis CH188]
          Length = 1439

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 470

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 471 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 527

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 528 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 563


>gi|19703626|ref|NP_603188.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713736|gb|AAL94487.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 1454

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 24/207 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL+S  + IIEIGAV++      +R  Q  L   GR       ++  ITDE 
Sbjct: 428 VVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQ--LINPGRPIPYHITEITSITDEQ 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128
           + ++P    +  +F DF    +A  +AHNA FD+GFI  ++++ +N D      +IDTL 
Sbjct: 486 VANEPKIDEVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKKYLNIDY--QCSVIDTLQ 541

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179
           +AR   P   +  L  L K  G+ +     H A+ DS   ++++I        K +    
Sbjct: 542 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLDKYKEKGLEYMK 599

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLL 206
            IN GF+ N       +K+++ NI +L
Sbjct: 600 DINVGFEVN------VKKQSLKNIMVL 620


>gi|255975216|ref|ZP_05425802.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|255968088|gb|EET98710.1| DNA polymerase III [Enterococcus faecalis T2]
          Length = 1439

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GITD
Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 470

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDTL
Sbjct: 471 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 527

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 528 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 563


>gi|332522391|ref|ZP_08398643.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332313655|gb|EGJ26640.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 1466

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 78/146 (53%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++         F  F+ P G   S    +L GITD  
Sbjct: 429 VVFDVETTGLSAINNDLIQIAASKMYK-GNIIEQFDEFINP-GHPLSSFTTELTGITDNH 486

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L    +   +   F  F   Q+A  +AHNA FDVGF+NA  +R +  PL    +IDTL  
Sbjct: 487 LIGAKTLLQVLEAFQAFC--QDAILVAHNASFDVGFMNANYER-HHLPLIKQPVIDTLEF 543

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 544 ARNLYPEYKRHGLGPLTKRFQVSLDH 569


>gi|15675759|ref|NP_269933.1| DNA polymerase III PolC [Streptococcus pyogenes M1 GAS]
 gi|81175278|sp|P0C0B8|DPO3_STRP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13622981|gb|AAK34654.1| DNA polymerase III (alpha subunit) [Streptococcus pyogenes M1 GAS]
          Length = 1465

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD+ 
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+      ++   F DF   +++  +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568


>gi|50915026|ref|YP_060998.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10394]
 gi|73919253|sp|Q5X9U8|DPO3_STRP6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|50904100|gb|AAT87815.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10394]
          Length = 1465

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD+ 
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+      ++   F DF   +++  +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568


>gi|69246860|ref|ZP_00604152.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
           subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257882946|ref|ZP_05662599.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257889275|ref|ZP_05668928.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260560113|ref|ZP_05832291.1| DNA polymerase III [Enterococcus faecium C68]
 gi|293560202|ref|ZP_06676704.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1162]
 gi|314937503|ref|ZP_07844836.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|314942162|ref|ZP_07849016.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|314947498|ref|ZP_07850913.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
 gi|314951485|ref|ZP_07854534.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|314992575|ref|ZP_07857993.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|314995490|ref|ZP_07860590.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|68195041|gb|EAN09504.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
           subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257818604|gb|EEV45932.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257825635|gb|EEV52261.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260073948|gb|EEW62272.1| DNA polymerase III [Enterococcus faecium C68]
 gi|291605874|gb|EFF35306.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1162]
 gi|313590324|gb|EFR69169.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|313592867|gb|EFR71712.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|313596325|gb|EFR75170.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|313599085|gb|EFR77930.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|313643144|gb|EFS07724.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|313646048|gb|EFS10628.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
          Length = 1452

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 8/160 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++        +F  F+ P G   S   + L GITD  
Sbjct: 428 VVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTGITDGM 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +   F +F   ++   +AHNA FD+GF+N    R    P   + +IDTL +
Sbjct: 486 VRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPVIDTLEL 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166
           AR  +P   R  L  L K++G+++   HR+ + A    HL
Sbjct: 543 ARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 582


>gi|297571338|ref|YP_003697112.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931685|gb|ADH92493.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 200

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 80/163 (49%), Gaps = 8/163 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+ETTGLD   DRIIEIG V L D  + +  F   + P   + S  A  +H I+
Sbjct: 1   MTYAVVDVETTGLDLATDRIIEIGIVLLSDSLEQSGYFHSLIDP---QRSITAQHIHHIS 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIID 125
              + D PSF+ +        + Q    +AHNA FD+GF+NAE  R      +D +  + 
Sbjct: 58  SAMVADAPSFALVAERVAKVLDGQII--VAHNAPFDLGFLNAEFARAQAGISIDRANAVC 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHL 166
           TL  +R   P   + L  L  R GI   ++HR+   AL  + L
Sbjct: 116 TLDQSRIYCPEGSHSLIGLAARLGIETPVAHRALADALTCTEL 158


>gi|71911485|ref|YP_283035.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS5005]
 gi|71854267|gb|AAZ52290.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS5005]
          Length = 1465

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD+ 
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+      ++   F DF   +++  +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568


>gi|94989303|ref|YP_597404.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS9429]
 gi|94993192|ref|YP_601291.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS2096]
 gi|123257711|sp|Q1J9R4|DPO3_STRPB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123382486|sp|Q1JJW3|DPO3_STRPC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94542811|gb|ABF32860.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS9429]
 gi|94546700|gb|ABF36747.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS2096]
          Length = 1465

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD+ 
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+      ++   F DF   +++  +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568


>gi|306826600|ref|ZP_07459906.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782]
 gi|304431208|gb|EFM34211.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782]
          Length = 1465

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD+ 
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+      ++   F DF   +++  +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568


>gi|322411039|gb|EFY01947.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 1465

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD+ 
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+      ++   F DF   +++  +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568


>gi|139474447|ref|YP_001129163.1| DNA polymerase III PolC [Streptococcus pyogenes str. Manfredo]
 gi|166217453|sp|A2RGI3|DPO3_STRPG RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|134272694|emb|CAM30965.1| DNA polymerase III PolC-type [Streptococcus pyogenes str. Manfredo]
          Length = 1465

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD+ 
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+      ++   F DF   +++  +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568


>gi|261207399|ref|ZP_05922085.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289566679|ref|ZP_06447096.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium D344SRF]
 gi|260078290|gb|EEW65995.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289161538|gb|EFD09421.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium D344SRF]
          Length = 1452

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 8/160 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++        +F  F+ P G   S   + L GITD  
Sbjct: 428 VVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTGITDGM 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +   F +F   ++   +AHNA FD+GF+N    R +  P   + +IDTL +
Sbjct: 486 VRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYAR-HGIPEAANPVIDTLEL 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166
           AR  +P   R  L  L K++G+++   HR+ + A    HL
Sbjct: 543 ARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 582


>gi|283769479|ref|ZP_06342375.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
           extructa W1219]
 gi|283103747|gb|EFC05133.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
           extructa W1219]
          Length = 1442

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 96/169 (56%), Gaps = 8/169 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFD+ETTGL +K D +IE GAV++ +  + +   Q+F+ P    + P  + K   I++E
Sbjct: 394 VVFDLETTGLSAKYDYMIEFGAVKIKNGLRLDSK-QLFIKPP--ISIPAFIEKKTNISNE 450

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++  SFS +  E   +    +A  +AHNA FD  F+N EL+R+++ PL  + +IDTL 
Sbjct: 451 MVRNAKSFSEVVDELLAYIG--DAVLVAHNASFDFPFLNEELRRLSRKPLT-NPVIDTLD 507

Query: 129 IARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +AR      SR  L  +   Y +  S    H A  D+++L+D +  ++V
Sbjct: 508 MARAILSDRSRFALEYVSNHYKLNYSRSDAHRADYDANILADAFEHLLV 556


>gi|168184157|ref|ZP_02618821.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf]
 gi|182672739|gb|EDT84700.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf]
          Length = 855

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+E+TG+++  D I++I  +++    +   +FQ FL P  +K+  ++  +HG +D+F
Sbjct: 496 VVFDVESTGINTTEDEIVQIAGIKINSKGEAIESFQRFLNP--KKSVGDSYLVHGFSDQF 553

Query: 70  LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK+   +   +  +F  F   ++   + HN  FD+  +N+EL+R++ +        DTL 
Sbjct: 554 LKENGENKKVVLKDFLKFI--KDTVIVGHNVTFDISILNSELERLSLEKASFKTYYDTLD 611

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IARR +PS  N  L +L K +      +S H A+ D     D+ + M+
Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDILMVML 657


>gi|330793394|ref|XP_003284769.1| hypothetical protein DICPUDRAFT_75736 [Dictyostelium purpureum]
 gi|325085263|gb|EGC38673.1| hypothetical protein DICPUDRAFT_75736 [Dictyostelium purpureum]
          Length = 501

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K R I FD+ET+G  S  D IIEIGAVEL+D  +T   FQ +  P  + + P A ++H +
Sbjct: 286 KGRVICFDLETSGF-SAEDSIIEIGAVELIDGCRTGVIFQSYAKPKAQIH-PRAEEIHQL 343

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII- 124
            +  L+  P    +   F D+  +  +  IAHN  FD   +  EL R  K P D   I  
Sbjct: 344 NNYLLQYSPPIEVMLCSFMDWVGD--SPLIAHNLSFDKRMLLQELVRY-KIPFDNDHICF 400

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMMVGG 178
            T+   R+ +      L+S+ ++  I  +  R  HGAL+D+ +LS VY  ++   
Sbjct: 401 CTMKYFRKVYMGLNYSLDSVSQKLKINKLLLRKTHGALVDAEILSIVYTHLLTAN 455


>gi|257125285|ref|YP_003163399.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257049224|gb|ACV38408.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b]
          Length = 1459

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 89/168 (52%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTG D  ND+IIEIGAV++         F  F+ P      P+ + +L  ITDE
Sbjct: 426 VVFDIETTGFDPFNDKIIEIGAVKMRGREVIGE-FSEFVNP--EIPIPQKITELTTITDE 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +     ++   F +F        +AHNAKFDVGFI    + I++       +IDTL 
Sbjct: 483 MVANAEKIETVLPRFLEFCT--GTTVVAHNAKFDVGFIKQ--KTIDQGLEYSPSVIDTLP 538

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   P  R   L +L K +GIT+   + H A+ D+   ++V+ K +
Sbjct: 539 LARTLLPELRGYGLANLVKYFGITL--ETHHRAVDDAKATAEVFQKFL 584


>gi|319939893|ref|ZP_08014248.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV]
 gi|319810904|gb|EFW07223.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV]
          Length = 1464

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S     L GITDE 
Sbjct: 427 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTDLTGITDEH 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF DF   Q+   +AHNA FDVGF+N   +R +  P     +IDTL  
Sbjct: 485 VKNAKPLEQVLQEFQDFC--QDTVLVAHNATFDVGFMNVNYER-HGLPRITQPVIDTLEF 541

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 542 ARNLYPEYKRHGLGPLTKRFQVSLDH 567


>gi|258615946|ref|ZP_05713716.1| DNA polymerase III PolC [Enterococcus faecium DO]
          Length = 663

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 8/160 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D IIE+ AV++        +F  F+ P G   S   + L GITD  
Sbjct: 428 VVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTGITDGM 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +   F +F   ++   +AHNA FD+GF+N    R    P   + +IDTL +
Sbjct: 486 VRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPVIDTLEL 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166
           AR  +P   R  L  L K++G+++   HR+ + A    HL
Sbjct: 543 ARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 582


>gi|71907264|ref|YP_284851.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71846885|gb|AAZ46381.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 721

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 10/168 (5%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGL+  N D II+IGA  +++     + TF   + P      P ++ +HGIT++
Sbjct: 533 VFDTETTGLEPSNGDEIIQIGAARIVNNRLLRQETFNQIVDPE-IPLKPASIPIHGITED 591

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ +P+   +   F +F   ++   IAHNA FD+ F+  + +R N     P  ++DTL 
Sbjct: 592 MVRGQPNIDVVLPAFHEFC--EDTVLIAHNAAFDMRFLQLKEERTNIRFTQP--VLDTLL 647

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++   HP+  +  L+ + +R GITI  R  H AL D+    +V++K++
Sbjct: 648 LSAVVHPNQESHKLDVILERLGITIGKR--HNALEDALATGEVFLKLV 693


>gi|197301360|ref|ZP_03166441.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC
           29176]
 gi|197299517|gb|EDY34036.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC
           29176]
          Length = 1517

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 13/169 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFDIETTG  +  D+IIEIGAV++++    +R F  F+ P  R    E   L  ITDE 
Sbjct: 482 IVFDIETTGFSAIRDKIIEIGAVKVVNGEIVDR-FSTFVNPQ-RPIPFEITNLTSITDEM 539

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127
           + +     ++  +F +F    +   +AHNA FDVGFI  N   Q I          +DT+
Sbjct: 540 VLEADPIENVLPQFLEFVG--DGVLVAHNASFDVGFIEQNCRYQEIEYR----FTYVDTV 593

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++AR   P+ S+  LN + K  GI++ +   H A+ D+   +++++K +
Sbjct: 594 AMARVLLPTLSKYKLNLVAKTLGISLENH--HRAVDDAGATAEIFVKFV 640


>gi|227524394|ref|ZP_03954443.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
 gi|227088625|gb|EEI23937.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
          Length = 1438

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD ETTGL +  DR+IE+ AV++ + S     F+ F+ P G   S +   L  ITDE 
Sbjct: 420 VVFDTETTGLSAIYDRVIELSAVKMKN-SNVIDQFEEFIDP-GFHLSEQTTNLTSITDEM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    S   +F  F DF   ++A  + HN  FD+GF+N    R +  P   + IIDTL++
Sbjct: 478 VHGSKSEEEVFKLFRDFC--EDAIVVGHNVTFDIGFMNTGYVR-HGMPEIKNPIIDTLTL 534

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           AR  +P+ R   LN+L K++ + + H   H A+ D+
Sbjct: 535 ARFLYPNMRGYRLNTLAKKFDVNLEHH--HRAIYDA 568


>gi|227510250|ref|ZP_03940299.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189902|gb|EEI69969.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 1438

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD ETTGL +  DR+IE+ AV++ + S     F+ F+ P G   S +   L  ITDE 
Sbjct: 420 VVFDTETTGLSAIYDRVIELSAVKMKN-SNVIDQFEEFIDP-GFHLSEQTTNLTSITDEM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    S   +F  F DF   ++A  + HN  FD+GF+N    R +  P   + IIDTL++
Sbjct: 478 VHGSKSEEEVFKLFRDFC--EDAIVVGHNVTFDIGFMNTGYVR-HGMPEIKNPIIDTLTL 534

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           AR  +P+ R   LN+L K++ + + H   H A+ D+
Sbjct: 535 ARFLYPNMRGYRLNTLAKKFDVNLEHH--HRAIYDA 568


>gi|322375786|ref|ZP_08050297.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C300]
 gi|321279054|gb|EFX56096.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C300]
          Length = 1463

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   +N   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KNTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|317471587|ref|ZP_07930931.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
 gi|316900902|gb|EFV22872.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
          Length = 1478

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 94/170 (55%), Gaps = 15/170 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK---LHGIT 66
           +VFDIETTG +S+ DRIIEIGAV+++   +   TF  F+ P      P   K   L  IT
Sbjct: 453 VVFDIETTGFNSQTDRIIEIGAVKVIA-GEITETFSEFINP----QIPIPFKITQLTTIT 507

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE + +  +  ++   F +F    ++  +AHNA FD GFI+   +R++ D   P+ I+DT
Sbjct: 508 DEMVMNADTIDAVLPRFLEFCG--DSVLVAHNAGFDTGFIHENAKRLDLD-FHPT-IVDT 563

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L ++R      ++  L++LCK   I +   + H A+ D+     ++IK +
Sbjct: 564 LGLSRSLMTHLAKFTLDNLCKNLNIKL--ETHHRAVDDATATGKIFIKFV 611


>gi|290579638|ref|YP_003484030.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025]
 gi|254996537|dbj|BAH87138.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025]
          Length = 1470

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 10/153 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKL 62
           N+   +VFD+ETTGL + N+ +I+I A ++    K N    F  F+ P G   S     L
Sbjct: 426 NEATYVVFDVETTGLSAINNDLIQIAASKM---HKGNIVEQFDEFIDP-GHPLSQFTTDL 481

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GITD+ +K       +  EF  F   Q+   +AHNA FDVGF+NA  +R +  P     
Sbjct: 482 TGITDQHVKGAKPILQVLQEFQSFC--QDTVLVAHNATFDVGFMNANYER-HDLPKITQP 538

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISH 154
           +IDTL  AR  +P   R+ L  L KR+ +++ H
Sbjct: 539 VIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEH 571


>gi|259415529|ref|ZP_05739450.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
 gi|259348759|gb|EEW60521.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
          Length = 473

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 91/186 (48%), Gaps = 8/186 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGL  + D I++I A  +++        F  ++ P GR   P + ++HG+ D 
Sbjct: 271 VVFDTETTGLSVETDAIVQIAAQRVMNGRLVKGEVFDAYVNP-GRAIPPASTRIHGVRDA 329

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D PS   +   F  F   ++A  +AHNA FD+G +  + +R      D   +   L 
Sbjct: 330 DVADAPSIEQVIPAFHHF--SKDAVLVAHNAPFDIGLLRQQ-ERATGIKWDHPVLDTVLL 386

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQI-NFGF 185
            A     S  + L++LC+R  I I  + +H AL D+   ++  +K+  ++ G  I  FG 
Sbjct: 387 SAVVFGISQEHSLDALCQRLAIEIPAQHRHTALGDAKATAEALVKLLPLLQGKGIETFGE 446

Query: 186 KTNEDR 191
              E R
Sbjct: 447 LVQETR 452


>gi|227513179|ref|ZP_03943228.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
 gi|227083560|gb|EEI18872.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
          Length = 1438

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD ETTGL +  DR+IE+ AV++ + S     F+ F+ P G   S +   L  ITDE 
Sbjct: 420 VVFDTETTGLSAIYDRVIELSAVKMKN-SNVIDQFEEFIDP-GFHLSEQTTNLTSITDEM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    S   +F  F DF   ++A  + HN  FD+GF+N    R +  P   + IIDTL++
Sbjct: 478 VHGSKSEEEVFKLFRDFC--EDAIVVGHNVTFDIGFMNTGYVR-HGMPEIKNPIIDTLTL 534

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           AR  +P+ R   LN+L K++ + + H   H A+ D+
Sbjct: 535 ARFLYPNMRGYRLNTLAKKFDVNLEHH--HRAIYDA 568


>gi|227498668|ref|ZP_03928812.1| DNA polymerase III [Acidaminococcus sp. D21]
 gi|226904124|gb|EEH90042.1| DNA polymerase III [Acidaminococcus sp. D21]
          Length = 225

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 81/163 (49%), Gaps = 9/163 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDE 68
           +V DIETTGLD     IIEIGAV + + + + R FQ FL P   ++ SP    L GITD 
Sbjct: 58  VVIDIETTGLDVARSAIIEIGAVHVRNGAVSGR-FQTFLTPEPYQSLSPFITNLTGITDS 116

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P+F  I     DF        + HN  FD+ F+   + R   + L+ +  +DT  
Sbjct: 117 DLVGAPTFREILPRLRDFLG--GYTLVGHNVNFDINFLYDRIYRETGEHLN-NPYLDTKK 173

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +A+   P  S   L +LCK +GI  +H   H A+ D  L   V
Sbjct: 174 LAKTVVPGLSHYSLEALCKHFGIAGNH---HRAVDDCELTEKV 213


>gi|46198769|ref|YP_004436.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus
           HB27]
 gi|55980782|ref|YP_144079.1| DNA polymerase III subunit epsilon-like protein [Thermus
           thermophilus HB8]
 gi|46196392|gb|AAS80809.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus
           HB27]
 gi|55772195|dbj|BAD70636.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus
           HB8]
          Length = 624

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 14/172 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLH 63
           +++    FD+ETTGLD + D ++ +  V +L      +  F+  + P GR  SP A  +H
Sbjct: 436 DQLLYTAFDLETTGLDPEQDAVVALAGVHVLGRRVLRQEVFEALVNP-GRPISPAATAVH 494

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G+T E L+DKP   ++   F  F   Q+   +AHN  FD+ F       + +  LD   +
Sbjct: 495 GLTAEMLRDKPPLEAVLPAFRAFV--QDTVLVAHNGAFDLAF-------LRRAGLDQPPL 545

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +DTL +A+   P  ++  L +L  R+G+  + R  H AL D+ + ++V+++M
Sbjct: 546 LDTLLLAQLLFPDLKDYRLEALAHRFGVPATGR--HTALGDALMTAEVFVRM 595


>gi|56696683|ref|YP_167044.1| DNA polymerase III epsilon subunit family exonuclease [Ruegeria
           pomeroyi DSS-3]
 gi|56678420|gb|AAV95086.1| exonuclease, DNA polymerase III, epsilon subunit family [Ruegeria
           pomeroyi DSS-3]
          Length = 470

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 9/168 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGL    D I++IGAV ++        R  Q  L   GR   P + ++HG++D 
Sbjct: 280 VFDTETTGLLPHKDEIVQIGAVRVVKGRIVPGERIDQ--LVDPGRPIPPASTRVHGVSDA 337

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P   +   +F  F   ++A  +AHNA FD+ F+     R   D   P  I+DT+ 
Sbjct: 338 MVAGAPDIVAAARQFHQF--ARDAVIVAHNAPFDIAFLRRHGPRCGLDWDHP--ILDTVL 393

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++     +S  + L++LC R G+TI    +H AL D+   ++V  +M+
Sbjct: 394 LSAVLFGASETHTLDALCDRLGVTIPAPLRHTALGDAQATAEVLCRML 441


>gi|319950859|ref|ZP_08024742.1| DNA polymerase III [Dietzia cinnamea P4]
 gi|319435472|gb|EFV90709.1| DNA polymerase III [Dietzia cinnamea P4]
          Length = 313

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ET+G+    DR++ + AV + D  +    F   L P      P  + +HG+T   
Sbjct: 5   VVVDVETSGMTPAVDRVLSVAAVVIGDDGEVVEEFATLLNPG---VDPGPVHVHGLTPAL 61

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           L  KP FS + +E     + +    +AHNA FD  F+ AE +R     PL+  R + TL 
Sbjct: 62  LAGKPRFSDVAAELGRVLDGRTV--VAHNAAFDASFLAAEARRAGLAPPLE--RFVCTLD 117

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            A R H S+ +  L++L   +G  +  R+ H A  D+  L+ V+  ++
Sbjct: 118 FAGRLHLSTADLKLSTLAAHFG--VRQRAAHDAHDDALALAGVFAGLL 163


>gi|309799630|ref|ZP_07693854.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302]
 gi|308116752|gb|EFO54204.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302]
          Length = 681

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 427 VVFDVETTGLSAIYNDLIQVAASKMYK-GNIIAEFDEFINP-GHHLSAFTTELTGITDDH 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 485 VKNAKPLVQVLKEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKITQPVIDTLEF 541

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALEH 567


>gi|170754900|ref|YP_001781966.1| DNA polymerase III PolC [Clostridium botulinum B1 str. Okra]
 gi|169120112|gb|ACA43948.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum B1 str. Okra]
          Length = 1432

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 94/166 (56%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFD+ETTG  SKND+IIEIGAV+ ++  K    F  F+ P   ++ P+ + +L  ITD+
Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVK-IEKGKIVDRFSEFVNP--ERSIPDKITELTSITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + DK +   I   F +F    ++  +AHNA FD  FIN   + +  +    + ++DT++
Sbjct: 476 MVDDKEAIDKILPRFIEFIG--DSVVVAHNAAFDASFINKNCKDLKIEF--KNSVMDTVT 531

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++R   P   R  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 532 LSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575


>gi|256028575|ref|ZP_05442409.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289766495|ref|ZP_06525873.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289718050|gb|EFD82062.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
          Length = 1449

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 98/189 (51%), Gaps = 18/189 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL+S  + IIEIGAV++      +R  Q  L   GR       ++  ITDE 
Sbjct: 423 VVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQ--LINPGRPIPYHITEITSITDEQ 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128
           + ++P  + +  +F DF    +A  +AHNA FD+GFI  ++++ +N D      +IDTL 
Sbjct: 481 VANEPKINEVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKYLNIDY--KCSVIDTLQ 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179
           +AR   P   +  L  L K  G+ +     H A+ DS   ++++I        K +    
Sbjct: 537 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEKGLEYMK 594

Query: 180 QINFGFKTN 188
            IN GF+ N
Sbjct: 595 DINTGFEVN 603


>gi|229829203|ref|ZP_04455272.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
           14600]
 gi|229792366|gb|EEP28480.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
           14600]
          Length = 1532

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 86/167 (51%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG  ++ DRIIEIGAV +     T+R F  F+ P GR       +L  I D+ 
Sbjct: 501 VVFDIETTGFSAEKDRIIEIGAVRMEGGRITDR-FSSFVNP-GRPIPFRITELTSIRDDM 558

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +        +  +F  F   Q A  +AHNA FD+GFI     R++ +   P+  +DT+++
Sbjct: 559 VIGSAGIEEVLPDFLAF--SQGAIMVAHNADFDMGFIRQNCLRLHLEA--PATYMDTVAM 614

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R   PS  N  LN+L K   I   H   H A+ D+   + ++ K +
Sbjct: 615 GRYLMPSLHNQKLNTLAKALKIDPGHH--HRAVDDAEATAHIFEKFI 659


>gi|218283081|ref|ZP_03489176.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
 gi|218216150|gb|EEC89688.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
          Length = 1446

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 9/169 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           +VFD+ETTGL +  D IIE G V++ +  +  R  Q+F+ P  ++  P  +  L  IT  
Sbjct: 398 VVFDLETTGLSNTRDEIIEFGGVKIKNREEVGR-LQMFINP--KRTIPAHISNLTHITQN 454

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +           E  +F    ++  +AHNA FDVGF+NA  ++  +D L  + +IDTL 
Sbjct: 455 DVDCAKPIEDALDELLEFIG--DSILVAHNATFDVGFMNAACRKTGRDEL-TNPVIDTLP 511

Query: 129 IARRKHP--SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++    P    R +L S+C+ Y ++      H A  D+ +LS V   MM
Sbjct: 512 LSYAMLPDEQKRFNLGSVCRHYRVSYDGEGAHRADYDADVLSQVMYNMM 560


>gi|7272366|gb|AAA27192.2| polymerase III epsilon (editing) subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium]
          Length = 132

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 59/97 (60%), Gaps = 8/97 (8%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
           HGI DEFL DKP F+ +  EF D+     AE + HNA
Sbjct: 66  HGIADEFLLDKPVFADVVDEFLDY--XXGAELVIHNA 100


>gi|319945650|ref|ZP_08019902.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
 gi|319748249|gb|EFW00491.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
          Length = 1463

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 54/148 (36%), Positives = 81/148 (54%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPISAFTTDLTGITD 481

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +++      +  EF +F   Q+A  +AHNA FDVGF+NA  +R +  P     +IDTL
Sbjct: 482 DHVRNAKPLKQVLEEFQEFC--QDAVLVAHNATFDVGFMNANYER-HGLPKITQPVIDTL 538

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+G+ + H
Sbjct: 539 EFARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|260494375|ref|ZP_05814506.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_33]
 gi|260198521|gb|EEW96037.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_33]
          Length = 1449

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 97/189 (51%), Gaps = 18/189 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL+S  + IIEIGAV++      +R  Q  L   GR       ++  ITDE 
Sbjct: 423 VVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQ--LINPGRPIPYHITEITSITDEQ 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128
           + ++P    +  +F DF    +A  +AHNA FD+GFI  ++++ +N D      +IDTL 
Sbjct: 481 VANEPKIDKVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKKYLNIDY--QCSVIDTLQ 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179
           +AR   P   +  L  L K  G+ +     H A+ DS   ++++I        K +    
Sbjct: 537 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEKGLEYMK 594

Query: 180 QINFGFKTN 188
            IN GF+ N
Sbjct: 595 DINTGFEVN 603


>gi|256845844|ref|ZP_05551302.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_36A2]
 gi|256719403|gb|EEU32958.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_36A2]
          Length = 1449

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 97/189 (51%), Gaps = 18/189 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL+S  + IIEIGAV++      +R  Q  L   GR       ++  ITDE 
Sbjct: 423 VVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQ--LINPGRPIPYHITEITSITDEQ 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128
           + ++P    +  +F DF    +A  +AHNA FD+GFI  ++++ +N D      +IDTL 
Sbjct: 481 VANEPKIDEVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKYLNIDY--QCSVIDTLQ 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179
           +AR   P   +  L  L K  G+ +     H A+ DS   ++++I        K +    
Sbjct: 537 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEKGLEYMK 594

Query: 180 QINFGFKTN 188
            IN GF+ N
Sbjct: 595 DINTGFEVN 603


>gi|78044072|ref|YP_360592.1| DNA polymerase III subunit alpha [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996187|gb|ABB15086.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 1407

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD ET+GL S+ D IIEIGAV++ D  +   TF V + P  +  S +  +L GIT++ 
Sbjct: 395 VAFDFETSGLSSQRDEIIEIGAVKIFD-GEIKETFSVLIRPQ-KPISAKISELTGITNDL 452

Query: 70  L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L K+   F     +F  F +   +  +AHNA FD GF+   L+R+  +      ++D L+
Sbjct: 453 LEKEGLDFGEAIEKFLRFCD--GSILLAHNAAFDYGFLRQALKRLGHE--RKFSVVDNLA 508

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + R   P  +N  L ++ +   + +S  + H AL DS+ L++V++K++
Sbjct: 509 LVRILFPELKNHKLKTITEH--LEVSLNNHHRALADSYALAEVFLKLL 554


>gi|237744035|ref|ZP_04574516.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
 gi|229431264|gb|EEO41476.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
          Length = 1449

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 97/189 (51%), Gaps = 18/189 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL+S  + IIEIGAV++      +R  Q  L   GR       ++  ITDE 
Sbjct: 423 VVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQ--LINPGRPIPYHITEITSITDEQ 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128
           + ++P    +  +F DF    +A  +AHNA FD+GFI  ++++ +N D      +IDTL 
Sbjct: 481 VANEPKIDKVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKKYLNIDY--QCSVIDTLQ 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179
           +AR   P   +  L  L K  G+ +     H A+ DS   ++++I        K +    
Sbjct: 537 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEKGLEYMK 594

Query: 180 QINFGFKTN 188
            IN GF+ N
Sbjct: 595 DINTGFEVN 603


>gi|166240304|ref|XP_001733024.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4]
 gi|165988531|gb|EDR41046.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4]
          Length = 483

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 92/173 (53%), Gaps = 7/173 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K R I FD+ET+G+ S +D IIEIGAVEL+D  +T   FQ +  P  + + P + ++H +
Sbjct: 298 KGRVICFDLETSGVTS-SDTIIEIGAVELIDGCRTGVIFQSYAQPKAQIH-PVSEQIHQL 355

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII- 124
           T   L   P    I + F D+    N+  +AHN  FD   +  EL R N  P +   I  
Sbjct: 356 TSLQLMSAPPIEIILASFMDWVG--NSPLVAHNLAFDKRILIQELIRYNI-PFNIDHICF 412

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMMV 176
            T+   ++ +      L+S+ ++  I  +  R  HGAL+DS +L+ +Y  +++
Sbjct: 413 CTMKYFKKIYNGLNYSLDSISQKLKINKLLLRKTHGALIDSEILAIIYTHLLI 465


>gi|34762810|ref|ZP_00143796.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887512|gb|EAA24596.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 1216

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 97/189 (51%), Gaps = 18/189 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL+S  + IIEIGAV++      +R  Q  L   GR       ++  ITDE 
Sbjct: 423 VVFDIETTGLNSHTNEIIEIGAVKIKSGRIMDRYSQ--LINPGRPIPYHITEITSITDEQ 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128
           + ++P    +  +F DF    +A  +AHNA FD+GFI  ++++ +N D      +IDTL 
Sbjct: 481 VANEPKIDKVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKYLNIDY--QCSVIDTLQ 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179
           +AR   P   +  L  L K  G+ +     H A+ DS   ++++I        K +    
Sbjct: 537 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEKGLEYMK 594

Query: 180 QINFGFKTN 188
            IN GF+ N
Sbjct: 595 DINTGFEVN 603


>gi|313673170|ref|YP_004051281.1| DNA polymerase iii, epsilon subunit [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939926|gb|ADR19118.1| DNA polymerase III, epsilon subunit [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 226

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 98/185 (52%), Gaps = 14/185 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETTGLD    +II + AV++  + K    + VF+ P G+   PE++K HGITDE +
Sbjct: 46  VVDTETTGLDINTAKIINLAAVKIKGF-KIIDYYNVFINP-GKSIDPESIKWHGITDEMV 103

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KDKP    +  EF  F   + +  + H+ KFDV  I+ EL       L   + +DT+ I 
Sbjct: 104 KDKPFVVEVMPEFVKFI--RKSVIVGHHIKFDVDMISKELMETFGCSL-KQKCLDTMFIY 160

Query: 131 RRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            R   + +ND   L+ L   Y +  + R  H AL D+   ++V+ KM++   QI+  FKT
Sbjct: 161 TRG-IAKKNDHVGLDFLLDLYKVRCNGR--HTALGDAMATAEVFNKMVM---QISDRFKT 214

Query: 188 NEDRF 192
             D +
Sbjct: 215 VRDLY 219


>gi|300214373|gb|ADJ78789.1| DNA polymerase III polC-type (PolIII) [Lactobacillus salivarius
           CECT 5713]
          Length = 1444

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD ETTGL ++ D++IE+ AV+ ++      TF+ F+ P G   S   + L  ITD+ 
Sbjct: 427 VIFDTETTGLSAQYDKVIELAAVK-MEKGNVIDTFEEFIDP-GHPLSQTTINLTSITDDM 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +F  F +F   ++   + HNA FDV F+N   +R N + +     IDTL +
Sbjct: 485 VRGSKSEEEVFRLFKEFC--KDCIIVGHNATFDVDFMNTGYERHNMEMIQEPW-IDTLPL 541

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR  +P  +   LN+L K+  I + H   H A+ D+     +Y  M+
Sbjct: 542 ARYLYPEMKGFRLNTLAKKLNIKLEHH--HRAIYDAEATGFIYYAML 586


>gi|303271977|ref|XP_003055350.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
 gi|226463324|gb|EEH60602.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
          Length = 1468

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 95/185 (51%), Gaps = 18/185 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGL    DRIIEI A +L D  KT+      + P     + +  +L GIT+  
Sbjct: 308 IVFDLETTGLAKLKDRIIEIAAYDLND--KTHAPMSTLVNPGRTYLTGQITRLTGITNAM 365

Query: 70  LKDK--PSF---SSIFSEFWDFFNEQNAE----WIAHNAK-FDVGFINAELQRINKDPLD 119
           + +   PSF   + +  EF D    +         AHNA+ FD GF+ AE  RI ++  D
Sbjct: 366 VSNPGVPSFVRAAELLEEFVDEARRRGGGASVILAAHNARQFDAGFLKAEYDRIQREFPD 425

Query: 120 PSRIIDTLSIARRKHPSSR----NDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKM 174
             R +DTL IAR+  P +     + + +L  RY +  +   + H A  D+ +L ++ ++ 
Sbjct: 426 DWRFVDTLPIARKLVPKTEVFGSHKMEALATRYDVKPVDGETAHRAGADARVLGEI-VEA 484

Query: 175 MVGGS 179
           M+G S
Sbjct: 485 MLGVS 489


>gi|21911223|ref|NP_665491.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS315]
 gi|28896601|ref|NP_802951.1| DNA polymerase III PolC [Streptococcus pyogenes SSI-1]
 gi|25452927|sp|Q8K5S8|DPO3_STRP3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21905436|gb|AAM80294.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
           MGAS315]
 gi|28811855|dbj|BAC64784.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
           SSI-1]
          Length = 1465

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD+ 
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+      ++   F DF   +++  +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568


>gi|94995162|ref|YP_603260.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10750]
 gi|123382133|sp|Q1J4M0|DPO3_STRPF RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94548670|gb|ABF38716.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10750]
          Length = 1465

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD+ 
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+      ++   F DF   +++  +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568


>gi|325841946|ref|ZP_08167523.1| UvrD/REP helicase [Turicibacter sp. HGF1]
 gi|325489779|gb|EGC92134.1| UvrD/REP helicase [Turicibacter sp. HGF1]
          Length = 849

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 92/171 (53%), Gaps = 7/171 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K R ++FD+E+TGLD   D +I+I A+EL++  +  R+F+ F+ P+   +  ++  +HG 
Sbjct: 492 KGRIVIFDVESTGLDVTQDEVIQIAAIELVN-GEYTRSFERFIKPS--HSVGDSALVHGF 548

Query: 66  TDEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +D++L +    +  +F +F  F   + A  I HN ++D+  +++++ R+     +     
Sbjct: 549 SDDYLNEHGEEAREVFLQFQAFV--EGALLIGHNVQYDLKIVSSQMNRLGLMFENSMGYY 606

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DTL I RR +P  +N        Y + +SH   H A+ D     DV +K M
Sbjct: 607 DTLDIVRRLYPDLKNHKLDTVSAY-VGVSHEPTHNAMDDILATKDVLVKSM 656


>gi|293375967|ref|ZP_06622227.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
 gi|292645404|gb|EFF63454.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
          Length = 849

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 92/171 (53%), Gaps = 7/171 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K R ++FD+E+TGLD   D +I+I A+EL++  +  R+F+ F+ P+   +  ++  +HG 
Sbjct: 492 KGRIVIFDVESTGLDVTQDEVIQIAAIELVN-GEYTRSFERFIKPS--HSVGDSALVHGF 548

Query: 66  TDEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +D++L +    +  +F +F  F   + A  I HN ++D+  +++++ R+     +     
Sbjct: 549 SDDYLNEHGEEAREVFLQFQAFV--EGALLIGHNVQYDLKIVSSQMNRLGLMFENSMGYY 606

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DTL I RR +P  +N        Y + +SH   H A+ D     DV +K M
Sbjct: 607 DTLDIVRRLYPDLKNHKLDTVSAY-VGVSHEPTHNAMDDILATKDVLVKSM 656


>gi|90961543|ref|YP_535459.1| DNA polymerase III PolC [Lactobacillus salivarius UCC118]
 gi|122449173|sp|Q1WUF9|DPO3_LACS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|90820737|gb|ABD99376.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118]
          Length = 1444

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD ETTGL ++ D++IE+ AV+ ++      TF+ F+ P G   S   + L  ITD+ 
Sbjct: 427 VIFDTETTGLSAQYDKVIELAAVK-MEKGNVIDTFEEFIDP-GHPLSQTTINLTSITDDM 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +F  F +F   ++   + HNA FDV F+N   +R N + +     IDTL +
Sbjct: 485 VRGSKSEEEVFRLFKEFC--KDCIIVGHNATFDVDFMNTGYERHNMEMIQEPW-IDTLPL 541

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR  +P  +   LN+L K+  I + H   H A+ D+     +Y  M+
Sbjct: 542 ARYLYPEMKGFRLNTLAKKLNIKLEHH--HRAIYDAEATGFIYYAML 586


>gi|301300283|ref|ZP_07206492.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852124|gb|EFK79799.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 1444

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD ETTGL ++ D++IE+ AV+ ++      TF+ F+ P G   S   + L  ITD+ 
Sbjct: 427 VIFDTETTGLSAQYDKVIELAAVK-MEKGNVIDTFEEFIDP-GHPLSQTTINLTSITDDM 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +F  F +F   ++   + HNA FDV F+N   +R N + +     IDTL +
Sbjct: 485 VRGSKSEEEVFRLFKEFC--KDCIIVGHNATFDVDFMNTGYERHNMEMIQEPW-IDTLPL 541

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR  +P  +   LN+L K+  I + H   H A+ D+     +Y  M+
Sbjct: 542 ARYLYPEMKGFRLNTLAKKLNIKLEHH--HRAIYDAEATGFIYYAML 586


>gi|227890631|ref|ZP_04008436.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
 gi|227867569|gb|EEJ74990.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
          Length = 1451

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD ETTGL ++ D++IE+ AV+ ++      TF+ F+ P G   S   + L  ITD+ 
Sbjct: 434 VIFDTETTGLSAQYDKVIELAAVK-MEKGNVIDTFEEFIDP-GHPLSQTTINLTSITDDM 491

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +F  F +F   ++   + HNA FDV F+N   +R N + +     IDTL +
Sbjct: 492 VRGSKSEEEVFRLFKEFC--KDCIIVGHNATFDVDFMNTGYERHNMEMIQEPW-IDTLPL 548

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR  +P  +   LN+L K+  I + H   H A+ D+     +Y  M+
Sbjct: 549 ARYLYPEMKGFRLNTLAKKLNIKLEHH--HRAIYDAEATGFIYYAML 593


>gi|322392646|ref|ZP_08066106.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
 gi|321144638|gb|EFX40039.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
          Length = 1463

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNIIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   Q+   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLKQVLQEFQEFC--QDTVLVAHNATFDVGFMNANYER-HGLPKITQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALDH 566


>gi|320547752|ref|ZP_08042036.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
 gi|320447512|gb|EFW88271.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
          Length = 1464

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 6/151 (3%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N+   +VFD+ETTGL + ++ +I+I A ++   +   + F  F+ P G   S    +L G
Sbjct: 422 NEATYVVFDVETTGLSAVHNDLIQIAASKMYKGNIVEQ-FDEFINP-GHHLSAFTTELTG 479

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD  +++      +   F DF   ++   +AHNA FDVGF+NA  +R +  P     +I
Sbjct: 480 ITDNHVRNAKPIEQVLQMFQDFC--KDTVLVAHNATFDVGFMNANYKR-HGMPTITQPVI 536

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISH 154
           DTL +AR  +P   R+ L  L KR+ +++ H
Sbjct: 537 DTLELARNLYPEYKRHGLGPLTKRFQVSLEH 567


>gi|167586484|ref|ZP_02378872.1| DNA polymerase III, epsilon subunit [Burkholderia ubonensis Bu]
          Length = 375

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  S   RI EIG VE+     +  T    L   G+   P   +L GI+D  
Sbjct: 16  VFVDLETTGGSSAEHRITEIGVVEIGPLGVSTWTS---LVNPGQPIPPFIQQLTGISDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+S+    ++  + +   ++AHNA FD GF+ AE +RI     +P  ++ T+ +
Sbjct: 73  VRDAPSFASLAPALFERLDGKL--FVAHNASFDRGFLRAEFERIGLA-FNPD-VLCTVRL 128

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+G+  S  ++H AL D+ LL   + ++
Sbjct: 129 SRALFPRESRHGLDALIERHGLVPS--ARHRALADADLLWQFWRQL 172


>gi|226313025|ref|YP_002772919.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
 gi|226095973|dbj|BAH44415.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
          Length = 1434

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 93/167 (55%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD ETTGL++    IIEI AV++      ++  +  L     +  P+  ++ GIT+E 
Sbjct: 422 VVFDTETTGLNASEHTIIEIAAVKMKGAEIIDQWTE--LIDPQLQIGPKTTEITGITNEM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+ + +   +  +F DF    +A  +AHNA+FD  FINA  +RI  +P   +  +DTL +
Sbjct: 480 LRGQETLDVVLRKFKDFTG--DAILVAHNAEFDKAFINACAKRIGMEPWT-NPFLDTLPL 536

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR  +   RN  L SL K++ + +   + H AL D+  L+ V+ +M+
Sbjct: 537 ARLMYKGMRNYRLGSLAKKFNVELI--NAHRALDDTVALAHVFQQML 581


>gi|304384865|ref|ZP_07367211.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
 gi|304329059|gb|EFL96279.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
          Length = 1436

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 94/158 (59%), Gaps = 8/158 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++FD+ETTGL +  D++IE+ AV++ + +  +  F+ F+ P G   S   + L  IT+
Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDE-FEEFIDP-GFPLSETTINLTSITN 476

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +F++F +F+  ++A  + HN  FD+GF+N    R   + +  + IIDTL
Sbjct: 477 EMVRGSLSEKEVFTKFREFY--EDAIIVGHNVTFDIGFMNTGYLRHGMEEIK-NPIIDTL 533

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           ++AR  +P+ +   LN+L K++ + + H   H A+ D+
Sbjct: 534 TLARFLYPTLKGYRLNTLAKKFNVALEHH--HRAIYDA 569


>gi|241895743|ref|ZP_04783039.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
 gi|241870786|gb|EER74537.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
          Length = 1437

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D++IE+ AV+++        F  F+ P G   S   + L  ITD+ 
Sbjct: 422 VVFDVETTGLSAAYDKVIELSAVKMVK-GNVIAEFSEFIDP-GFSLSQTTVDLTSITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +F+ F +F+ +  A  + HN  FD+GF+N   +R     +  + +IDTL++
Sbjct: 480 VRGSKSEKEVFTAFREFYGD--AILVGHNVTFDMGFMNEGYERHGMGSIT-NPVIDTLTL 536

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           AR  +P+ R+  LN+L K +G+ +     H A+ DS
Sbjct: 537 ARFLYPNMRSYRLNTLAKHFGVLLEQH--HRAIFDS 570


>gi|270290316|ref|ZP_06196541.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
 gi|270281097|gb|EFA26930.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
          Length = 1436

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 94/158 (59%), Gaps = 8/158 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++FD+ETTGL +  D++IE+ AV++ + +  +  F+ F+ P G   S   + L  IT+
Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDE-FEEFIDP-GFPLSETTINLTSITN 476

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +F++F +F+  ++A  + HN  FD+GF+N    R   + +  + IIDTL
Sbjct: 477 EMVRGSLSEKEVFTKFREFY--EDAIIVGHNVTFDIGFMNTGYLRHGMEEIK-NPIIDTL 533

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           ++AR  +P+ +   LN+L K++ + + H   H A+ D+
Sbjct: 534 TLARFLYPTLKGYRLNTLAKKFNVALEHH--HRAIYDA 569


>gi|114319829|ref|YP_741512.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226223|gb|ABI56022.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 719

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 7/173 (4%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +++  +VFD ETTGL  ++ D II IGAV L++       +   L    R     A + H
Sbjct: 520 DQLSCVVFDTETTGLSPARGDEIIAIGAVRLVNGRVLQDEYFEQLVKPCRAIPDSATRFH 579

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++E +   P    +   F  F  E++   +AHNA FD+GF+     R       P  +
Sbjct: 580 GISNEDVARAPEIGPVLRAFSRFIGEESV-LVAHNAAFDMGFLRRAQARAGLA--FPQPV 636

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DTL ++   H  S +  L  + +R G+ +  R  H AL D+ + +DV+ +M+
Sbjct: 637 LDTLLLSVYLHDHSPDHTLEGVAERLGVEVQKR--HSALADARVTADVFARMI 687


>gi|210612665|ref|ZP_03289413.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787]
 gi|210151467|gb|EEA82475.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787]
          Length = 234

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 12/168 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGLD +ND IIEIGA+++ +   T+R F  FL P+    SP    + GIT+E 
Sbjct: 6   VVFDLETTGLDVENDNIIEIGALKVREGKVTDR-FMEFLKPD-MPISPMITGITGITNEM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+     ++  +F +F  +     + HN  FD  F+     +  +      + IDTL I
Sbjct: 64  VKNARDTKTVIRDFVNFCEDHI--LVGHNIMFDYKFMKKYASQYGES--FEKKGIDTLKI 119

Query: 130 ARRKHPS-SRNDLNSLCKRYGI--TISHRSKHGALLDS---HLLSDVY 171
           AR+ H       L +LC+ Y I  T +HR+ H AL  +   H+++  +
Sbjct: 120 ARKVHKDLESKSLEALCEHYQIVNTAAHRAYHDALATAKVYHMMAHYF 167


>gi|116333947|ref|YP_795474.1| DNA polymerase III PolC [Lactobacillus brevis ATCC 367]
 gi|122269369|sp|Q03QS9|DPO3_LACBA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116099294|gb|ABJ64443.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           brevis ATCC 367]
          Length = 1445

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 89/156 (57%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D++IE+ AV+ +++      F+ F+ P G   S +   L  ITD+ 
Sbjct: 426 VVFDVETTGLSAIYDKVIELSAVK-MEHQNVVDQFEEFIDP-GFPLSEQTTNLTSITDDM 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    S   +F  F +F  +  A  + HN  FDVGF+N   QR     +  + IIDTL++
Sbjct: 484 VAGSKSEEEVFKLFREFCGD--AIIVGHNVTFDVGFMNTGYQRHGMAEIS-NPIIDTLTL 540

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           AR  +P+ ++  LN+L KR+ +++ H   H A+ D+
Sbjct: 541 ARFLYPTLKSYRLNTLAKRFHVSLEHH--HRAVYDA 574


>gi|50365104|ref|YP_053529.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
 gi|50363660|gb|AAT75645.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
          Length = 1493

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 97/176 (55%), Gaps = 7/176 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           IR++KM  +VFD+ETTGL  + + IIE GAV + D      T   +L    +      + 
Sbjct: 435 IRESKM--VVFDLETTGLSPEFNEIIEFGAV-VFDPVTGKTTKYDYLFKPKQPLKQFTID 491

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  IT E L+DK +    F + ++    +++  +AHNA FD  F+N+  +R+    L  +
Sbjct: 492 LTNITPEMLEDKKNIDDDFDKIYELI--KDSILVAHNANFDFNFLNSLSKRLGYGDLQ-N 548

Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +IDTL+++R   P+ ++  L ++CK++GI       H    D+ +L+D++ K++ 
Sbjct: 549 TVIDTLTLSRLVRPALKSHRLGAVCKKFGILYDEHVAHRGDYDADVLNDLFFKIIA 604


>gi|71907536|ref|YP_285123.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71847157|gb|AAZ46653.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 453

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 10/170 (5%)

Query: 7   MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR + F D+ETTG  + +DRI EIG VE +D   + R +Q  + P G +  P   +L GI
Sbjct: 1   MRPLAFVDLETTGATATHDRITEIGIVE-VDADGSVREWQQLVNP-GMRIPPFIEQLTGI 58

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +DE + D P F +I  E       +   +IAHNA+FD GF+  E +R+       + ++ 
Sbjct: 59  SDEMVADAPPFEAIAGEVMKRL--EGRLFIAHNARFDYGFLKNEFKRLGVT--FRAAVLC 114

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           T+ ++R   P   R++L+SL +R+   +   ++H AL D+ L+   + K+
Sbjct: 115 TVKLSRTLFPEHKRHNLDSLIERH--ELRAEARHRALADAQLIHQFWQKI 162


>gi|320332653|ref|YP_004169364.1| DNA polymerase III subunit epsilon [Deinococcus maricopensis DSM
           21211]
 gi|319753942|gb|ADV65699.1| DNA polymerase III, epsilon subunit [Deinococcus maricopensis DSM
           21211]
          Length = 174

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 8/172 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL-KLHG 64
           M  +VFD+ETTGL  + D I+EIGA+ + +     + TF   + P   ++ P  + ++HG
Sbjct: 1   MEYVVFDLETTGLSPERDAIVEIGAIRIRNGEVLEDDTFHTLVNPE--RDIPWYVSRVHG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I +  +   P  +     F  +        +AHNA FD GFI A   R   +   P R I
Sbjct: 59  IRNAHVASAPRITEALPAFLQYAGTTPV--VAHNAAFDTGFIRAAAARQGLE-WRPQREI 115

Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            TL ++RR  P  + + L++L +R G+    R  H A  D+ L +  +  ++
Sbjct: 116 CTLQLSRRAFPREKSHKLDALAQRLGLLQEARGLHSAHADARLTAHAFAHLL 167


>gi|257068588|ref|YP_003154843.1| hypothetical protein Bfae_14220 [Brachybacterium faecium DSM 4810]
 gi|256559406|gb|ACU85253.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Brachybacterium faecium DSM 4810]
          Length = 551

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 10/164 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG D   D I EIGAV++    +    F+ F+ P  R        L GITD  
Sbjct: 22  VVVDLETTGTDPAADAITEIGAVKVRG-GEVLGEFRTFVDPE-RPIPAYIASLTGITDAA 79

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + PS  ++   F DF    +A  +AHNA+FD+GF++A+          P R++DTL++
Sbjct: 80  VAEAPSIRTVLPMFLDFAG--DAALVAHNARFDIGFLSAQAAACEITWPRP-RVLDTLAL 136

Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           AR   R+     + L++L +  G  I+    H AL D+    DV
Sbjct: 137 ARTVFRRDEVRDHRLSTLARHVGAGIT--PDHRALSDARATVDV 178


>gi|302386245|ref|YP_003822067.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
 gi|302196873|gb|ADL04444.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
          Length = 1516

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 95/170 (55%), Gaps = 15/170 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66
           +VFDIETTG  S  +RIIEIGAV++ + +  ++ F  F+ P    + P   E  KL GI 
Sbjct: 493 VVFDIETTGFSSSRNRIIEIGAVKVENGTIADK-FSTFVNP----DVPIPFEIEKLTGIN 547

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  +   P  + I   F +F    N+  +AHNA FDV FI     R+N    +P+ +IDT
Sbjct: 548 DNMVLPYPKINEILPRFLEFCG--NSVLVAHNAAFDVSFIAYNAARLNL-AFEPT-VIDT 603

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +++AR   P+ +R  L+++ K   + +S  + H A+ D+   +++++  +
Sbjct: 604 VALARLLLPNLNRYKLDTVAK--ALVVSLENHHRAVDDAGCTAEIFVAFV 651


>gi|218282259|ref|ZP_03488558.1| hypothetical protein EUBIFOR_01140 [Eubacterium biforme DSM 3989]
 gi|218216727|gb|EEC90265.1| hypothetical protein EUBIFOR_01140 [Eubacterium biforme DSM 3989]
          Length = 525

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 8/171 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FD+ETTGLDSK DRIIE+GA+ L +   T  T+   + P   K S EA  ++ IT+
Sbjct: 51  RYVAFDVETTGLDSKKDRIIEVGAI-LFENGHTVETYSSLVNPE-VKISKEATTINHITN 108

Query: 68  EFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
             +K  P+   +  E   F  +   +     AHNA FD+ F++  L R   D       +
Sbjct: 109 GMVKKAPTEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLSQALMRQGYDA--QILCL 166

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DTLS++R+  P   N   +   ++   I ++ +H A+ D+ +  ++  K++
Sbjct: 167 DTLSLSRKIIPGLSNYKQTTVAKH-FNIKNKQEHRAISDAEVCGEILWKLL 216


>gi|302338443|ref|YP_003803649.1| DNA polymerase III subunit epsilon [Spirochaeta smaragdinae DSM
           11293]
 gi|301635628|gb|ADK81055.1| DNA polymerase III, epsilon subunit [Spirochaeta smaragdinae DSM
           11293]
          Length = 210

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 68/127 (53%), Gaps = 5/127 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD ETTGLDS  DRI+EIGAV      KT  TF   + P G    P +  +HGITD+ 
Sbjct: 26  VSFDFETTGLDSFRDRILEIGAVSWRQ-GKTKETFSSLVRP-GIPVPPASTAVHGITDDD 83

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P        F  F   + A  +AHN  FD GF+ + + R+    L  +  IDTL++
Sbjct: 84  LLDAPDEKGALVSFLRFIEGKVA--VAHNLPFDYGFLESSVDRLGLS-LGDTLFIDTLTL 140

Query: 130 ARRKHPS 136
           +RR +P 
Sbjct: 141 SRRVYPG 147


>gi|225858122|ref|YP_002739632.1| DNA polymerase III PolC [Streptococcus pneumoniae 70585]
 gi|225720766|gb|ACO16620.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae 70585]
          Length = 1463

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|168484148|ref|ZP_02709100.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1873-00]
 gi|172042563|gb|EDT50609.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1873-00]
          Length = 1463

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|149006027|ref|ZP_01829756.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP18-BS74]
 gi|147762383|gb|EDK69344.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP18-BS74]
          Length = 1463

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|298256053|ref|ZP_06979639.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502091|ref|YP_003724031.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|298237686|gb|ADI68817.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
          Length = 1463

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|194397447|ref|YP_002036972.1| DNA polymerase III PolC [Streptococcus pneumoniae G54]
 gi|194357114|gb|ACF55562.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae G54]
          Length = 1463

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|168576299|ref|ZP_02722182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae MLV-016]
 gi|307066950|ref|YP_003875916.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae AP200]
 gi|183577861|gb|EDT98389.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae MLV-016]
 gi|306408487|gb|ADM83914.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae AP200]
          Length = 1463

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|332204293|gb|EGJ18358.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA47901]
          Length = 1463

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|307126490|ref|YP_003878521.1| DNA polymerase III subunit alpha, Gram-positive type [Streptococcus
           pneumoniae 670-6B]
 gi|306483552|gb|ADM90421.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae 670-6B]
 gi|332076720|gb|EGI87182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA17545]
          Length = 1463

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|225860309|ref|YP_002741818.1| DNA polymerase III PolC [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229634|ref|ZP_06963315.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|225727760|gb|ACO23611.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae Taiwan19F-14]
          Length = 1463

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|168493969|ref|ZP_02718112.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC3059-06]
 gi|183576230|gb|EDT96758.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC3059-06]
 gi|332077575|gb|EGI88036.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA41301]
          Length = 1463

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|148988015|ref|ZP_01819478.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP6-BS73]
 gi|147926479|gb|EDK77552.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP6-BS73]
          Length = 1463

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|149011144|ref|ZP_01832449.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764780|gb|EDK71710.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP19-BS75]
          Length = 1463

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|15902295|ref|NP_357845.1| DNA polymerase III PolC [Streptococcus pneumoniae R6]
 gi|116515846|ref|YP_815772.1| DNA polymerase III PolC [Streptococcus pneumoniae D39]
 gi|32469721|sp|Q8DRA5|DPO3_STRR6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|122279342|sp|Q04MH6|DPO3_STRP2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|15457800|gb|AAK99055.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae R6]
 gi|116076422|gb|ABJ54142.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae D39]
          Length = 1463

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|15900208|ref|NP_344812.1| DNA polymerase III PolC [Streptococcus pneumoniae TIGR4]
 gi|111658314|ref|ZP_01409003.1| hypothetical protein SpneT_02000504 [Streptococcus pneumoniae
           TIGR4]
 gi|21263563|sp|Q97SQ2|DPO3_STRPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14971745|gb|AAK74452.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae TIGR4]
          Length = 1463

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|332202187|gb|EGJ16256.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA41317]
          Length = 1463

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|182683255|ref|YP_001835002.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|303255179|ref|ZP_07341253.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
 gi|182628589|gb|ACB89537.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|301801215|emb|CBW33889.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV200]
 gi|302597812|gb|EFL64884.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
          Length = 1463

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|126729411|ref|ZP_01745225.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Sagittula stellata E-37]
 gi|126710401|gb|EBA09453.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Sagittula stellata E-37]
          Length = 468

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 5/172 (2%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            ++   V D ETTGL    D I++IGAV +++           L   GR   P + K+HG
Sbjct: 272 GRLTYTVLDTETTGLLPHKDEIVQIGAVRIVNGRIVPGERMDQLVNPGRPIPPASSKVHG 331

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +TD  +   P  +     F  F   +++  +AHNA FD+ F++    R+  +   P  I+
Sbjct: 332 VTDAMVAGAPGIAEAGRRFHTF--ARDSVIVAHNAPFDMAFLHRHKTRMGVEWTHP--IL 387

Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+ ++     +S+ + L++LC R  +TI    +H AL D+   ++V+ +M+
Sbjct: 388 DTVLLSAVLFGASQTHTLDALCDRLAVTIPPNLRHTALGDAQATAEVFGRML 439


>gi|116872751|ref|YP_849532.1| DNA polymerase III PolC [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123466238|sp|A0AIC1|DPO3_LISW6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116741629|emb|CAK20753.1| DNA polymerase III [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 1444

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +
Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K       +   F ++  +     +AHNA FD+GFIN   +++  +  D + ++DTL +A
Sbjct: 488 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAD-NAVVDTLELA 544

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           R  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 545 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577


>gi|301793541|emb|CBW35916.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV104]
          Length = 1463

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|255284409|ref|ZP_05348964.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella
           formatexigens DSM 14469]
 gi|255265034|gb|EET58239.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella
           formatexigens DSM 14469]
          Length = 1530

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 19/172 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--- 66
           +VFD+ETTG     +RIIEIGAV++ +   T+R F  F+ P      P   ++  +T   
Sbjct: 511 VVFDLETTGFSPTQNRIIEIGAVKVENGEITDR-FSTFVNP----QVPIPFRIEQLTSIN 565

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRII 124
           D  + D P+   +  EF DF    +A   AHNA FDV FI   ++R+   +D       +
Sbjct: 566 DNMVMDAPTIEQVLPEFLDFVG--DAVLAAHNASFDVSFIEENMRRLGLWRD----FTYV 619

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+++AR   P  +R  L+++ K   + + H   H A+ D+   + +Y+K M
Sbjct: 620 DTVALARVLLPQLNRFKLDTVAKALHVQLQHH--HRAVDDAECTAGIYLKFM 669


>gi|291519550|emb|CBK74771.1| DNA polymerase III catalytic subunit, PolC type [Butyrivibrio
           fibrisolvens 16/4]
          Length = 1480

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 92/168 (54%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG + KN++IIEIGAV+  D    +  F  F+ P          +L  ITD+ 
Sbjct: 449 VVFDIETTGFNPKNNKIIEIGAVKFKDGEIVDH-FSEFINPE-VPIPYRITELTSITDDM 506

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   I  +F +F   +    +AHNA FD  FI    +++  +  D +  +DT+ +
Sbjct: 507 VLDAPTIDVILPKFMEFC--KGTVLVAHNAGFDTSFIRYNCKQLGLE-YDYTH-VDTVEV 562

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           AR  HP ++R +L+++CK   +   H   H A+ D+ + + ++ K +V
Sbjct: 563 ARYLHPNNARFNLDAVCKLENVVNEHH--HRAVADAEVTAKIFEKFIV 608


>gi|262037779|ref|ZP_06011221.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
           goodfellowii F0264]
 gi|261748251|gb|EEY35648.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
           goodfellowii F0264]
          Length = 1438

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTGLD   D+IIEIGA++L      +  F VF+ P    + PE +  L  IT++
Sbjct: 413 VVFDIETTGLDPYKDKIIEIGAIKLKGKEIIDE-FSVFINP--EIDIPEEITALTNITND 469

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD     ++  +F +F  +     +AHNAKFDVGFIN + + +  +   PS +IDTL 
Sbjct: 470 MVKDAEKVETVLPKFLEFCKDTTV--VAHNAKFDVGFINQKAKNLGLE-YSPS-VIDTLH 525

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            AR   P   R  L  +   + + + +   H A+ D+   ++++ K +
Sbjct: 526 WARILLPEQKRFGLKYIANYFNVVLDNH--HRAVDDAKATAEIFQKFL 571


>gi|225568406|ref|ZP_03777431.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM
           15053]
 gi|225162634|gb|EEG75253.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM
           15053]
          Length = 1487

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 93/168 (55%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           +VFD+ETTG  S  D+IIEIGAV+ ++  +    F  F+ P  +   P    +L GITD+
Sbjct: 449 VVFDLETTGFSSIKDKIIEIGAVK-VEGGRITEKFSTFVDP--KIPIPFRITQLTGITDQ 505

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   +    F +F    +A  +AHNA FDVGFI+   + ++  P      +DT++
Sbjct: 506 MVMDAPEIEAALPAFLEFAG--DAALVAHNAGFDVGFIDQNCRYMDITP--DFTAVDTVA 561

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R   P+ S+  LN + K   + IS  + H A+ D+   ++++++ +
Sbjct: 562 MSRILLPTLSKFKLNVVAK--ALNISLENHHRAVDDAGATAEIFVRFV 607


>gi|73537451|ref|YP_297818.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
 gi|72120788|gb|AAZ62974.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
          Length = 530

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 96/169 (56%), Gaps = 11/169 (6%)

Query: 8   RKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IVF D+ETTG D+++DRI EIG VE+    +  + +   L P G    P   +L GIT
Sbjct: 30  RPIVFVDLETTGADAQHDRITEIGVVEV--GPEGIQEWDTLLDP-GVSIPPFIQRLTGIT 86

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE ++ +P+F+SI     +    Q   ++AHNA+FD GF+  E +R        + ++ T
Sbjct: 87  DETVQGQPTFASIAEALAERL--QGRLFVAHNARFDYGFLKNEFRRAGLT--FRADVLCT 142

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + ++R   PS +R+ L+++  R+   +  R++H AL D+ LL   + K+
Sbjct: 143 VRLSRSLFPSAARHGLDAIIARF--DLQPRARHRALADAELLWQFWQKI 189


>gi|256847046|ref|ZP_05552492.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256715710|gb|EEU30685.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 1448

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 8/161 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL +  D++IE+ A ++ D    +R F  F+ P G   S +  +L  ITD+ 
Sbjct: 429 VIFDVETTGLSAIYDKVIELSATKMKDGKVLDR-FDEFIDP-GFPLSEQTTELTSITDDM 486

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +F  F DF     +    HN  FD+GF+N   QR +  P     +IDTL +
Sbjct: 487 VQGSKSEEEVFKMFQDFC--AGSIIAGHNVSFDMGFMNTGYQR-HHLPEITQPVIDTLPL 543

Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167
           AR  +P  R   LN+L K++ +++   HR+ + A    HLL
Sbjct: 544 ARFLYPDLRGYRLNTLSKKFKVSLEHHHRANYDAEATGHLL 584


>gi|307710886|ref|ZP_07647313.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK321]
 gi|307617331|gb|EFN96504.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK321]
          Length = 1463

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPRISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|149017968|ref|ZP_01834427.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931532|gb|EDK82510.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP23-BS72]
          Length = 1463

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|237649657|ref|ZP_04523909.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974]
 gi|237821357|ref|ZP_04597202.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974M2]
          Length = 1463

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|332203439|gb|EGJ17506.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA47368]
          Length = 1463

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|307705682|ref|ZP_07642529.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK597]
 gi|307620762|gb|EFN99851.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK597]
          Length = 1463

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|306830212|ref|ZP_07463396.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
 gi|304427738|gb|EFM30834.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
          Length = 1463

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|322377559|ref|ZP_08052049.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M334]
 gi|321281324|gb|EFX58334.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M334]
          Length = 1463

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|303259383|ref|ZP_07345360.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|303261138|ref|ZP_07347087.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|303263466|ref|ZP_07349389.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
 gi|303265758|ref|ZP_07351656.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|303267811|ref|ZP_07353613.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302637975|gb|EFL68461.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|302639317|gb|EFL69775.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|302642507|gb|EFL72852.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302644666|gb|EFL74915.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|302647239|gb|EFL77463.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
          Length = 1463

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|148983680|ref|ZP_01816999.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP3-BS71]
 gi|147923827|gb|EDK74939.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP3-BS71]
 gi|301799415|emb|CBW31952.1| DNA polymerase III PolC-type [Streptococcus pneumoniae OXC141]
          Length = 1463

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|307707703|ref|ZP_07644182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis NCTC 12261]
 gi|307616201|gb|EFN95395.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis NCTC 12261]
          Length = 1463

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|168490797|ref|ZP_02714940.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC0288-04]
 gi|225853872|ref|YP_002735384.1| DNA polymerase III PolC [Streptococcus pneumoniae JJA]
 gi|183574875|gb|EDT95403.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC0288-04]
 gi|225723163|gb|ACO19016.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae JJA]
          Length = 1463

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|148994700|ref|ZP_01823804.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|168489751|ref|ZP_02713950.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP195]
 gi|147927100|gb|EDK78140.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|183571799|gb|EDT92327.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP195]
 gi|332075131|gb|EGI85601.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA17570]
          Length = 1463

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|315611914|ref|ZP_07886833.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
 gi|315316092|gb|EFU64125.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
          Length = 1463

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|270292055|ref|ZP_06198270.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M143]
 gi|270279583|gb|EFA25425.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M143]
          Length = 1463

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|221231173|ref|YP_002510325.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
 gi|220673633|emb|CAR68120.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
          Length = 1463

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|222152446|ref|YP_002561621.1| DNA polymerase III PolC [Streptococcus uberis 0140J]
 gi|222113257|emb|CAR40776.1| DNA polymerase III PolC-type [Streptococcus uberis 0140J]
          Length = 1465

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++         F  F+ P G   S    +L GITD  
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMYK-GNIIEQFDEFIDP-GHPLSAFTTELTGITDNH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L        +  EF  F +  +   +AHNA FD+GF+NA  +R N  P     +IDTL  
Sbjct: 486 LIGAKPLLQVLEEFQAFCH--DTVLVAHNASFDIGFMNANYER-NGLPQITQPVIDTLEF 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLEH 568


>gi|332799219|ref|YP_004460718.1| DNA polymerase III subunit alpha [Tepidanaerobacter sp. Re1]
 gi|332696954|gb|AEE91411.1| DNA polymerase III, alpha subunit [Tepidanaerobacter sp. Re1]
          Length = 1422

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 95/180 (52%), Gaps = 13/180 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTGL   ND IIEIGAV++L+    +R F  F+ P  R      + L GIT++ 
Sbjct: 409 VVVDIETTGLCFDNDEIIEIGAVKILNNEIIDR-FSSFIKPQ-RLIPTNIINLTGITNDM 466

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LK       +   F +F    +  ++AHNA+FD GFI  E  ++   P   + I+DTL++
Sbjct: 467 LKTARPIEKVLPSFMEFLG--DGVFVAHNAEFDSGFIRREASKLGI-PFK-NNILDTLAL 522

Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGG----SQIN 182
           AR      +N  L++L K   I +   HR+   A   + +L ++ IK+   G    SQIN
Sbjct: 523 ARIIFSKLKNHRLDTLAKELNIKMGSHHRAIDDAKTAALILQELLIKVNEAGINNLSQIN 582


>gi|295094742|emb|CBK83833.1| DNA polymerase III catalytic subunit, PolC type [Coprococcus sp.
           ART55/1]
          Length = 1603

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 13/169 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL  K+++IIEIGAV++ D  +   TF  F+ P G     +  +L  I D+ 
Sbjct: 548 VVFDIETTGLSKKHNKIIEIGAVKVKD-GEVVDTFSEFINP-GVPIPYQIEQLTSINDDM 605

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127
           +KD P F  I   F +F  +     +AHNA FD GF+  NAE   +  D    + ++DT+
Sbjct: 606 VKDAPMFDVIVPRFVEFCGDDIV--VAHNASFDTGFVRMNAEELGLKFD----NTVLDTM 659

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +++    P   +  L+ +CK   +  +H   H A+ D+   + V+ K++
Sbjct: 660 TLSHILLPELGKFTLDRVCKELKVVNAHH--HRAIDDAEATAKVFFKLL 706


>gi|306824435|ref|ZP_07457781.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304433222|gb|EFM36192.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 1463

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|332637692|ref|ZP_08416555.1| DNA polymerase III PolC [Weissella cibaria KACC 11862]
          Length = 1440

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D++IE+ AV+++        F  F+ P G   S   + L  ITD+ 
Sbjct: 425 VVFDVETTGLSAVYDKVIELSAVKMVK-GNVIAEFSEFIDP-GFPLSQTTVDLTSITDDM 482

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++       +F EF +F+ +  A  + HN  FD+GF+     R    P+  + +IDTL +
Sbjct: 483 VRGSKPEKQVFEEFREFYGD--AVLVGHNVTFDMGFMQEGYARHQLAPIT-NPVIDTLIL 539

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           AR  +P+ R+  LN+L K +GI +     H A+ DS
Sbjct: 540 ARFLYPNMRSYRLNTLAKHFGIVLEQH--HRAIFDS 573


>gi|293364694|ref|ZP_06611411.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307702942|ref|ZP_07639889.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus oralis ATCC 35037]
 gi|291316144|gb|EFE56580.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307623335|gb|EFO02325.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus oralis ATCC 35037]
          Length = 1463

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|169833032|ref|YP_001693801.1| DNA polymerase III PolC [Streptococcus pneumoniae Hungary19A-6]
 gi|168995534|gb|ACA36146.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae Hungary19A-6]
          Length = 1463

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|312960549|ref|ZP_07775055.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
 gi|311285075|gb|EFQ63650.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
          Length = 105

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 2/91 (2%)

Query: 6  KMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +R +V D ETTG+  +   RIIEIG VEL+    T R F V+L P+ R +   A+ +HG
Sbjct: 2  AIRSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPD-RDSDEGAIGVHG 60

Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI 95
          ITDEFLK KP F+ +  EF++F N     +I
Sbjct: 61 ITDEFLKGKPRFAEVADEFFEFINGAQLSFI 91


>gi|153867763|ref|ZP_01998021.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. SS]
 gi|152144917|gb|EDN71979.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. SS]
          Length = 149

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 24/150 (16%)

Query: 107 NAELQRINKDPLD--PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           N EL  +N+  +     +I DTL++AR+ HP  +N L++LCKRY +  S R +HGALLD+
Sbjct: 10  NYELGLLNRQAVTHYCQKITDTLALARKCHPGQKNTLDALCKRYHVDNSTRQRHGALLDA 69

Query: 165 HLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP------LFTRIT- 217
            +L++VY+ M  G   +     TNE            N +++K+ KP      +  RIT 
Sbjct: 70  KILAEVYLAMTGGQVSLLVQRNTNESN----------NANIMKQLKPIPSQRAILVRITP 119

Query: 218 -KEELDEHDKTIQTL----GKNAIWDRYIS 242
            +EEL  H++ +  +    G   +W ++++
Sbjct: 120 SEEELRAHEQCLIAIEKASGGKCLWQKFMT 149


>gi|210608497|ref|ZP_03287873.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787]
 gi|210152988|gb|EEA83994.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787]
          Length = 1269

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 15/170 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66
           +VFDIETTG  +  D IIEIGAV++ +   T++ +  F+ P      P   E  +L  I 
Sbjct: 457 VVFDIETTGFSAVEDHIIEIGAVKVENGKITDK-YSTFVNP----EVPIPFEITQLTSID 511

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P    I  +F +F    +A  +AHNA FDVGFI    + +N +    S  +DT
Sbjct: 512 DSMVMDAPKIDVILPQFLEFVG--DASLVAHNAGFDVGFIEQNCKNLNIEQEFVS--VDT 567

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +++AR   P+ S+  LN + K   + IS  + H A+ D+   +++++K +
Sbjct: 568 VALARVLLPTLSKYKLNIVAK--ALNISLENHHRAVDDAGATAEIFVKFV 615


>gi|149001610|ref|ZP_01826583.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
 gi|147760068|gb|EDK67057.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
          Length = 1113

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|83590002|ref|YP_430011.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC
           39073]
 gi|83572916|gb|ABC19468.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC
           39073]
          Length = 921

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGLD   DRIIEI AV  L+     R FQ  + P GR   P   +L GI+D  
Sbjct: 7   VVLDVETTGLDPARDRIIEIAAVR-LEGGNITRQFQTLVNP-GRPIPPAIERLTGISDAM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ P    +     D F  ++A  + HN  FD+ F+N  L      PL     +DTL++
Sbjct: 65  VREAPPLPEVLPGLLDLF--RDAIPVGHNGTFDLAFLNQALGHGWHSPL-----LDTLAL 117

Query: 130 ARRKHP---SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +R   P   S R D  S       T  HR+    L  + LL +++
Sbjct: 118 SRILFPCLASHRLDYMSKYLTLEATGHHRALDDVLTTARLLENLW 162


>gi|325265145|ref|ZP_08131871.1| DNA polymerase III PolC-type (PolIII) [Clostridium sp. D5]
 gi|324029549|gb|EGB90838.1| DNA polymerase III PolC-type (PolIII) [Clostridium sp. D5]
          Length = 233

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 11/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD+ETTGL+ + + IIEIGA+++ D  K    F  F+ P     SP  + L GIT+E 
Sbjct: 6   IAFDLETTGLNPEQNEIIEIGALKVRD-GKVQERFMEFVRPT-ENISPVVMNLTGITNEM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLS 128
           + D  S  ++  +F DF  +     I HN  FD  F+         + LD  R  IDTL 
Sbjct: 64  VADARSSRNVIPDFLDFCGDDI--LIGHNVIFDYSFVKIGAM---AEGLDFERAGIDTLK 118

Query: 129 IARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHL 166
           IAR+ H    +  L  LC  Y I    +HR+ H AL  + L
Sbjct: 119 IARKVHKDMESKSLGCLCDYYHIENNAAHRAYHDALATAKL 159


>gi|237756693|ref|ZP_04585197.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691145|gb|EEP60249.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 205

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 87/167 (52%), Gaps = 9/167 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL+ K   IIEI A+++     T + F   + P+         KL GIT+  +
Sbjct: 13  VVDLETTGLNPKTSEIIEIAAIKVEGNVITEK-FHTLVKPSIGFIPEHITKLTGITNPLV 71

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIIDTLSI 129
            DKP    +F  F +F   +N+  IAHNAKFD+ F+N A  Q   K   +P  +I TL +
Sbjct: 72  IDKPKIEQVFPHFLEF--TKNSIIIAHNAKFDISFLNEASFQLTGKLIQNP--VICTLVL 127

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A R  P  ++  L +L   Y   I +  KH AL D+ +  +++ K +
Sbjct: 128 ANRLFPDLKSKSLTNLA--YHFNIPYHRKHRALADAEVTYELFKKFV 172


>gi|306820890|ref|ZP_07454510.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551004|gb|EFM38975.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 1398

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 11/170 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGIT 66
           + IVFD+ETTG  ++ND I EIGA+++ +        Q+    N  +  PE + KL GIT
Sbjct: 381 KYIVFDLETTGFSNRNDAITEIGAIKVENGEIVEEFSQLI---NPERPIPEKIQKLTGIT 437

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E + DKP+ S +  +F DF   +++  +AHN+ FD GF+  +    N  P D    IDT
Sbjct: 438 NEMVIDKPTISEVLPKFLDFC--KDSILVAHNSDFDTGFVREKASE-NNLPYDFDA-IDT 493

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + ++R   P  +N  LN++ K   + +S  + H A+ D+   + +++  +
Sbjct: 494 VILSRLLMPDLKNHKLNTIAKE--LNVSLENHHRAVDDATATAQIFLNFI 541


>gi|253582216|ref|ZP_04859439.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
           ATCC 27725]
 gi|251835755|gb|EES64293.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
           ATCC 27725]
          Length = 1446

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 10/165 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           +VFD+ET GL+S    IIEIGAV+L       R  Q+    N +K  P+ ++ L  I+ +
Sbjct: 421 VVFDLETMGLNSHEHEIIEIGAVKLQGTRIVERYSQLV---NPKKTIPKKIQELTNISQD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P+   +  +F +F    ++  +AHNA FD+GFI  ++++I      P+ +IDTL 
Sbjct: 478 MVDNMPTIEEVLPKFMEFVG--DSTMVAHNAPFDMGFIRRDVKKIMGYDYKPA-VIDTLQ 534

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +AR  +P  +   L +L K  G+++ +   H A+ DS   ++++I
Sbjct: 535 MARDLYPELKAYGLKNLNKVLGLSLDNH--HRAVDDSQATANMFI 577


>gi|148996698|ref|ZP_01824416.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70]
 gi|147757273|gb|EDK64312.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70]
          Length = 910

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|289167137|ref|YP_003445404.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
 gi|288906702|emb|CBJ21536.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
          Length = 1463

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNIVAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|163815213|ref|ZP_02206590.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759]
 gi|158449408|gb|EDP26403.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759]
          Length = 1623

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 13/169 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL  K+++IIEIGAV++ D  +   TF  F+ P G     +  +L  I D+ 
Sbjct: 568 VVFDIETTGLSKKHNKIIEIGAVKVKD-GEVVDTFSEFINP-GVPIPYQIEQLTSINDDM 625

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127
           +KD P +  I   F +F  +     +AHNA FD GF+  NAE   +  D    + ++DT+
Sbjct: 626 VKDAPMYDVIVPRFVEFCGDDIV--VAHNASFDTGFVKKNAEELGLRFD----NTVLDTM 679

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +++    P   +  L+ +CK   +  +H   H A+ D+   S V+ K++
Sbjct: 680 TLSHILLPELGKFTLDRVCKELKVVNAHH--HRAIDDAEATSKVFFKLL 726


>gi|295695291|ref|YP_003588529.1| DNA polymerase III, epsilon subunit [Bacillus tusciae DSM 2912]
 gi|295410893|gb|ADG05385.1| DNA polymerase III, epsilon subunit [Bacillus tusciae DSM 2912]
          Length = 250

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 8/169 (4%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEAL-KL 62
           +++  +VFD ETTG D + D +IEIGAV + +   + ++TF   +     +  PE + ++
Sbjct: 54  DRLTYVVFDTETTGFDWRTDALIEIGAVRVENGQVREDQTFSSLIALEPGRRVPEVVRRI 113

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G++++ L   P    + S F  F    +A  +AH+A  DV F+N  L +     L P R
Sbjct: 114 TGLSEQELWRAPKVQDVLSRFMAF--SSDAVLVAHHAGHDVNFLNVPLNQFYGIEL-PRR 170

Query: 123 IIDTLSIARRKHP-SSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLS 168
           ++DT  +ARR  P +    L+ L +R  I     HR+ + ALL + + S
Sbjct: 171 VVDTAQVARRLWPDTGEATLDYLIERMAIPPLTRHRALNDALLTARIWS 219


>gi|168485959|ref|ZP_02710467.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1087-00]
 gi|183570911|gb|EDT91439.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1087-00]
          Length = 1463

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSVFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|315222325|ref|ZP_07864231.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
 gi|315188658|gb|EFU22367.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
          Length = 1456

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S     L GITDE 
Sbjct: 419 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTDLTGITDEH 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF DF   Q+   +AHNA FDVGF+N   +R +  P     +IDTL  
Sbjct: 477 VKNAKPLEQVLQEFQDFC--QDTVLVAHNATFDVGFMNVNYER-HGLPRITQPVIDTLEF 533

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 534 ARNLYPEYKRHGLGPLTKRFQVSLDH 559


>gi|221640011|ref|YP_002526273.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131]
 gi|221160792|gb|ACM01772.1| DNA polymerase III, epsilon subunit precursor [Rhodobacter
           sphaeroides KD131]
          Length = 695

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 8/193 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R   +  +VFD ETTGL    D I++I AV +++  +        L    R   P + ++
Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPHRSIPPSSTEV 549

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGITD  + + P    +   F  F   + A  +AHNA FD+ F+      I +   +P  
Sbjct: 550 HGITDAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNAPFDMEFLRRAEPLIGRRFDNP-- 605

Query: 123 IIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK---MMVGG 178
           I+DT+ + A     S  + L++L  R GITI   ++H A+ D+   +D ++K   M+ G 
Sbjct: 606 ILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVATADAFLKLLPMLQGR 665

Query: 179 SQINFGFKTNEDR 191
               FG   +E R
Sbjct: 666 GFETFGAVLSEVR 678


>gi|332559019|ref|ZP_08413341.1| putative exonuclease [Rhodobacter sphaeroides WS8N]
 gi|332276731|gb|EGJ22046.1| putative exonuclease [Rhodobacter sphaeroides WS8N]
          Length = 695

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 8/193 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R   +  +VFD ETTGL    D I++I AV +++  +        L    R   P + ++
Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPHRPIPPSSTEV 549

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGITD  + + P    +   F  F   + A  +AHNA FD+ F+      I +   +P  
Sbjct: 550 HGITDAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNAPFDMEFLRRAEPLIGRRFDNP-- 605

Query: 123 IIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK---MMVGG 178
           I+DT+ + A     S  + L++L  R GITI   ++H A+ D+   +D ++K   M+ G 
Sbjct: 606 ILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVATADAFLKLLPMLQGR 665

Query: 179 SQINFGFKTNEDR 191
               FG   +E R
Sbjct: 666 GFETFGAVLSEVR 678


>gi|315302974|ref|ZP_07873694.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           ivanovii FSL F6-596]
 gi|313628654|gb|EFR97067.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           ivanovii FSL F6-596]
          Length = 1452

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 20/161 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +
Sbjct: 438 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 495

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           K       +   F         EW      +AHNA FD+GFIN   +++   P   + ++
Sbjct: 496 KGSDPIDVVLQRF--------KEWSADDILVAHNASFDMGFINTAYEKVGI-PKAENAVV 546

Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           DTL +AR  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 547 DTLELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 585


>gi|77464143|ref|YP_353647.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1]
 gi|77388561|gb|ABA79746.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1]
          Length = 695

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 8/193 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R   +  +VFD ETTGL    D I++I AV +++  +        L    R   P + ++
Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPHRPIPPSSTEV 549

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGITD  + + P    +   F  F   + A  +AHNA FD+ F+      I +   +P  
Sbjct: 550 HGITDAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNAPFDMEFLRRAEPLIGRRFDNP-- 605

Query: 123 IIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK---MMVGG 178
           I+DT+ + A     S  + L++L  R GITI   ++H A+ D+   +D ++K   M+ G 
Sbjct: 606 ILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVATADAFLKLLPMLQGR 665

Query: 179 SQINFGFKTNEDR 191
               FG   +E R
Sbjct: 666 GFETFGAVLSEVR 678


>gi|327390689|gb|EGE89029.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA04375]
          Length = 1463

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GYPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|293115337|ref|ZP_05790986.2| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810483|gb|EFF69688.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
          Length = 1476

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 94/169 (55%), Gaps = 10/169 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFD+ETTGL   ND IIEIGAV++ +    +R F  F+ P  +   P  + +L GI D 
Sbjct: 452 VVFDLETTGLSPVNDSIIEIGAVKIQNKKVVDR-FSTFVNP--KIPIPYNIEQLTGIDDS 508

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D  +  +I  EF  F +   A  +AHNA+FDV FI  + + I     + + ++DT+S
Sbjct: 509 MVVDADTIENILPEFLKFCD--GAVMVAHNAEFDVTFIREKTKTILGKAFECT-VVDTVS 565

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +AR   P+  +  L+ + K   +++ H   H A+ D+   +D+++ ++ 
Sbjct: 566 LARALIPNLGKFTLDHVAKALNVSLLHH--HRAVDDAECCADIFLALVA 612


>gi|320528407|ref|ZP_08029569.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
 gi|320131321|gb|EFW23889.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
          Length = 1449

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD+ETTGL    D IIE GAV + + +  +R  Q+F+ P          K + IT++ 
Sbjct: 395 ISFDLETTGLSCYFDHIIEFGAVRIKNSTIIDRK-QLFIKPPVSIPGFITSKTN-ITNDM 452

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+   F+    E  D+   ++   +AHNA FD  F+N EL+RI + PL  + +IDTL +
Sbjct: 453 VKNAKPFAEAIDEILDYI--KDDVLVAHNATFDYYFLNEELRRIGRKPL-TNVVIDTLDM 509

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R   P  R   L +L + Y +  +    H A  D+  L+DV++ ++
Sbjct: 510 SRAVLPDRRAYRLGNLSRYYHVNYNEEEAHRADFDAGALADVFLCLL 556


>gi|114707953|ref|ZP_01440845.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Fulvimarina pelagi HTCC2506]
 gi|114536582|gb|EAU39714.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Fulvimarina pelagi HTCC2506]
          Length = 466

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 91/170 (53%), Gaps = 13/170 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNG---RKNSPEALKLHGIT 66
           VFD ETTGL    D I++IGA+ ++D       TF   + P G   R +S    K+HGIT
Sbjct: 276 VFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTLVDPGGPIPRASS----KIHGIT 331

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +  +P  +     F++F  E  +  +AHNA FD+ F+    + +      P  I+DT
Sbjct: 332 DKMVMGQPRIAEAGRRFFEFSKE--SVLVAHNAPFDMSFLRRHEKAMGVAFDHP--IVDT 387

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + ++     ++ R+ L+ +C+R GI I  + +H AL D+ + ++   +M+
Sbjct: 388 VLVSAIIFGTTERHMLDVVCERLGIRIEKKDRHTALGDARVTAEAMKRML 437


>gi|126462986|ref|YP_001044100.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104650|gb|ABN77328.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 695

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 8/193 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R   +  +VFD ETTGL    D I++I AV +++  +        L    R   P + ++
Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPHRPIPPSSTEV 549

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGITD  + + P    +   F  F   + A  +AHNA FD+ F+      I +   +P  
Sbjct: 550 HGITDAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNAPFDMEFLRRAEPLIGRRFDNP-- 605

Query: 123 IIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK---MMVGG 178
           I+DT+ + A     S  + L++L  R GITI   ++H A+ D+   +D ++K   M+ G 
Sbjct: 606 ILDTVLLSAVLFGQSDVHSLDALTHRIGITIPEEARHTAIGDTVATADAFLKLLPMLQGR 665

Query: 179 SQINFGFKTNEDR 191
               FG   +E R
Sbjct: 666 GFETFGAVLSEVR 678


>gi|225856031|ref|YP_002737542.1| DNA polymerase III PolC [Streptococcus pneumoniae P1031]
 gi|225725805|gb|ACO21657.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae P1031]
          Length = 1463

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GYPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|314981011|gb|EFT25105.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA3]
 gi|315093023|gb|EFT64999.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL060PA1]
          Length = 597

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 97/190 (51%), Gaps = 25/190 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G  + P +++ L GITD 
Sbjct: 33  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--SIPASVQVLTGITDV 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSRIID 125
            ++  PS +++    W  F+   A  +AHNA+FD+GF    LQR       P D   ++D
Sbjct: 89  MVRSAPSLNAVLPS-WSEFSRSTA-LVAHNARFDIGF----LQRAYAQHDYPWDDPAVVD 142

Query: 126 TLSIARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQ 180
           TL++AR        RN  L++L + +  T +    H AL D+    DV   ++  VG   
Sbjct: 143 TLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG--- 197

Query: 181 INFGFKTNED 190
            N G  T ED
Sbjct: 198 -NLGVTTLED 206


>gi|99078640|ref|YP_611898.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040]
 gi|99035778|gb|ABF62636.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040]
          Length = 479

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 90/175 (51%), Gaps = 7/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61
           R +++  +VFD ETTGL    D I+E+ A  +L+    +   F+ ++ P GR     + K
Sbjct: 267 RLSELNFVVFDTETTGLSVTKDAIVELAAARVLNGRILDGEVFETYVDP-GRPIPAASTK 325

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG+ D  +   P   ++   F DF   Q+A  +AHNA FD+G +  +  +       P 
Sbjct: 326 IHGVRDADVAQSPRIEAVIPAFHDF--AQSAVLVAHNAPFDIGLLRQQEVQTGCSWDHP- 382

Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DT+ ++      S+ + L++LC R  I I  R +H A  D+   ++  I+++
Sbjct: 383 -VVDTVLLSALVFGISADHSLDALCSRLSIEIPARHRHTAKGDARATAEALIRLL 436


>gi|314966430|gb|EFT10529.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA2]
 gi|315091670|gb|EFT63646.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA4]
 gi|327327874|gb|EGE69650.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL103PA1]
          Length = 590

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 97/190 (51%), Gaps = 25/190 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G  + P +++ L GITD 
Sbjct: 26  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--SIPASVQVLTGITDV 81

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSRIID 125
            ++  PS +++    W  F+   A  +AHNA+FD+GF    LQR       P D   ++D
Sbjct: 82  MVRSAPSLNAVLPS-WSEFSRSTA-LVAHNARFDIGF----LQRAYAQHDYPWDDPAVVD 135

Query: 126 TLSIARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQ 180
           TL++AR        RN  L++L + +  T +    H AL D+    DV   ++  VG   
Sbjct: 136 TLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG--- 190

Query: 181 INFGFKTNED 190
            N G  T ED
Sbjct: 191 -NLGVTTLED 199


>gi|294784973|ref|ZP_06750261.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_27]
 gi|294486687|gb|EFG34049.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_27]
          Length = 1449

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 18/189 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL+S  + IIEIGAV++      +R  Q  L   GR       ++  IT+E 
Sbjct: 423 VVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQ--LINPGRPIPYHITEITSITNEQ 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128
           + ++P    +  +F DF    +A  +AHNA FD+GFI  ++++ +N D      +IDTL 
Sbjct: 481 VANEPKIDKVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKYLNIDY--QCSVIDTLQ 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179
           +AR   P   +  L  L K  G+ +     H A+ DS   ++++I        K +    
Sbjct: 537 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEKGLEYMK 594

Query: 180 QINFGFKTN 188
            IN GF+ N
Sbjct: 595 DINTGFEVN 603


>gi|313633403|gb|EFS00239.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri FSL N1-067]
          Length = 1452

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 12/157 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +
Sbjct: 438 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 495

Query: 71  KDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           K       +       F E +A+   +AHNA FD+GFIN   +++   P   + ++DTL 
Sbjct: 496 KGSDPIDVVLKR----FKEWSADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLE 550

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           +AR  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 551 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 585


>gi|312869005|ref|ZP_07729182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus oris PB013-T2-3]
 gi|311095431|gb|EFQ53698.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus oris PB013-T2-3]
          Length = 1444

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 8/161 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL +  D++IE+ AV++ +     R F  F+ P G   S +   L  ITDE 
Sbjct: 424 VIFDVETTGLSAIYDKVIELSAVKMKNGEVLAR-FDEFIDP-GFPLSEQTTNLTSITDEM 481

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   +   +F  F DF   Q      HN  FD+GF+N   +R   + +    +IDTL +
Sbjct: 482 VRGSKTEEEVFKMFKDFC--QGTIIAGHNVSFDMGFMNTGYRRHQMEEIT-EPVIDTLPL 538

Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167
           AR  +P+ R   LN+L K++ + +   HR+ + A    HLL
Sbjct: 539 ARFLYPNMRGYRLNTLSKKFKVALEHHHRANYDAEATGHLL 579


>gi|289434601|ref|YP_003464473.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170845|emb|CBH27387.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 1444

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 12/157 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +
Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487

Query: 71  KDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           K       +       F E +A+   +AHNA FD+GFIN   +++   P   + ++DTL 
Sbjct: 488 KGSDPIDVVLKR----FKEWSADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLE 542

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           +AR  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577


>gi|313638095|gb|EFS03362.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri FSL S4-171]
          Length = 1444

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 12/157 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +
Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487

Query: 71  KDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           K       +       F E +A+   +AHNA FD+GFIN   +++   P   + ++DTL 
Sbjct: 488 KGSDPIDVVLKR----FKEWSADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLE 542

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           +AR  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577


>gi|325686582|gb|EGD28608.1| DNA polymerase III PolC [Streptococcus sanguinis SK72]
          Length = 1462

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++      +  EF +F   Q++  +AHNA FDVGF+N   +R N  P     +IDTL
Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHNL-PKITQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|262283487|ref|ZP_06061253.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
 gi|262260978|gb|EEY79678.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
          Length = 1462

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++  S   +  EF +F   Q++  +AHNA FDVGF+N   +R +  P     +IDTL
Sbjct: 481 EHVRNAKSLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|291536049|emb|CBL09161.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis M50/1]
          Length = 911

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 19/172 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--- 66
           +VFD+ETTG     ++IIEIGAV+++    T R F  F+ P      P   ++  +T   
Sbjct: 482 VVFDLETTGFSPDKNKIIEIGAVKVVHGEITER-FSTFVNP----EVPIPYRIEELTSIR 536

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124
           D+ + D P   +I  +F +F    +A  +AHNA FD+ FI  N E Q I K+      II
Sbjct: 537 DDMVIDAPKIETILPQFMEFCG--DAIMVAHNADFDMSFIIKNCERQGIEKE----FTII 590

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+++AR   P  +R  L+++ K  G+++ +   H A+ D+   +++++K +
Sbjct: 591 DTVALARILLPQLNRFKLDTVAKALGVSLENH--HRAVDDAGCTAEIFVKFV 640


>gi|282854298|ref|ZP_06263635.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139]
 gi|282583751|gb|EFB89131.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139]
          Length = 633

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 97/190 (51%), Gaps = 25/190 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G  + P +++ L GITD 
Sbjct: 69  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--SIPASVQVLTGITDV 124

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSRIID 125
            ++  PS +++    W  F+   A  +AHNA+FD+GF    LQR       P D   ++D
Sbjct: 125 MVRSAPSLNAVLPS-WSEFSRSTA-LVAHNARFDIGF----LQRAYAQHDYPWDDPAVVD 178

Query: 126 TLSIARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQ 180
           TL++AR        RN  L++L + +  T +    H AL D+    DV   ++  VG   
Sbjct: 179 TLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG--- 233

Query: 181 INFGFKTNED 190
            N G  T ED
Sbjct: 234 -NLGVTTLED 242


>gi|307709855|ref|ZP_07646304.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK564]
 gi|307619404|gb|EFN98531.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK564]
          Length = 1463

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R     +    +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGLSKISQP-VIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|50842208|ref|YP_055435.1| hypothetical protein PPA0720 [Propionibacterium acnes KPA171202]
 gi|50839810|gb|AAT82477.1| DNA polymerase III epsilon subunit (3'-5' exonuclease)
           [Propionibacterium acnes KPA171202]
 gi|314923288|gb|EFS87119.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL001PA1]
 gi|315107037|gb|EFT79013.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA1]
          Length = 633

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 97/190 (51%), Gaps = 25/190 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G  + P +++ L GITD 
Sbjct: 69  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--SIPASVQVLTGITDV 124

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSRIID 125
            ++  PS +++    W  F+   A  +AHNA+FD+GF    LQR       P D   ++D
Sbjct: 125 MVRSAPSLNAVLPS-WSEFSRSTA-LVAHNARFDIGF----LQRAYAQHDYPWDDPAVVD 178

Query: 126 TLSIARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQ 180
           TL++AR        RN  L++L + +  T +    H AL D+    DV   ++  VG   
Sbjct: 179 TLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG--- 233

Query: 181 INFGFKTNED 190
            N G  T ED
Sbjct: 234 -NLGVTTLED 242


>gi|77920206|ref|YP_358021.1| DNA polymerase III subunit [Pelobacter carbinolicus DSM 2380]
 gi|77546289|gb|ABA89851.1| DNA polymerase III subunit [Pelobacter carbinolicus DSM 2380]
          Length = 222

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 15/190 (7%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+G+   + DR IEIGAV ++     +R FQ  + P  R +S       GI++ 
Sbjct: 20  VVLDFETSGMSPVQGDRAIEIGAVRIVGGQIADR-FQSLMNPGCRISS-FIESFTGISNA 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P  + + + F DF    +A  +AHNA FD  F++AELQRI++          +L 
Sbjct: 78  MVQAAPPATQVMAAFHDFIG--DAPLVAHNASFDRRFLDAELQRIDR--CRRQEFACSLL 133

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV------GGSQI 181
           +ARR +P S N  L +L    G+  +    H AL D+ + + ++++M        G SQ+
Sbjct: 134 VARRVYPDSPNHKLATLVSYKGLP-TDGCFHRALADAEMTAHLWLRMAADLQDAYGFSQV 192

Query: 182 NFGFKTNEDR 191
            F   +   R
Sbjct: 193 PFALMSALAR 202


>gi|217964533|ref|YP_002350211.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes HCC23]
 gi|217333803|gb|ACK39597.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes HCC23]
 gi|307570901|emb|CAR84080.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes L99]
          Length = 1443

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +
Sbjct: 429 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 486

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL +A
Sbjct: 487 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 543

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           R  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 544 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 576


>gi|315103201|gb|EFT75177.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA2]
          Length = 658

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 97/190 (51%), Gaps = 25/190 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G  + P +++ L GITD 
Sbjct: 94  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--SIPASVQVLTGITDV 149

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSRIID 125
            ++  PS +++    W  F+   A  +AHNA+FD+GF    LQR       P D   ++D
Sbjct: 150 MVRSAPSLNAVLPS-WSEFSRSTA-LVAHNARFDIGF----LQRAYAQHDYPWDDPAVVD 203

Query: 126 TLSIARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQ 180
           TL++AR        RN  L++L + +  T +    H AL D+    DV   ++  VG   
Sbjct: 204 TLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG--- 258

Query: 181 INFGFKTNED 190
            N G  T ED
Sbjct: 259 -NLGVTTLED 267


>gi|16803360|ref|NP_464845.1| DNA polymerase III PolC [Listeria monocytogenes EGD-e]
 gi|21263551|sp|Q8Y7G1|DPO3_LISMO RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16410736|emb|CAC99398.1| polC [Listeria monocytogenes EGD-e]
          Length = 1444

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +
Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL +A
Sbjct: 488 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 544

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           R  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 545 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577


>gi|322388734|ref|ZP_08062331.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
 gi|321140353|gb|EFX35861.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
          Length = 1464

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GITD+ 
Sbjct: 427 VVFDVETTGLSAIYNDLIQVAASKMYK-GNIIAEFDEFINP-GHPLSAFTTELTGITDDH 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 485 VKNAKPLVQVLKEFQEFC--KDTVLVAHNASFDVGFMNANYER-HGLPKITQPVIDTLEF 541

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALEH 567


>gi|224501737|ref|ZP_03670044.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-561]
          Length = 1444

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +
Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL +A
Sbjct: 488 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 544

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           R  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 545 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577


>gi|224499902|ref|ZP_03668251.1| DNA polymerase III PolC [Listeria monocytogenes Finland 1988]
          Length = 1444

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +
Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL +A
Sbjct: 488 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 544

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           R  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 545 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577


>gi|254828680|ref|ZP_05233367.1| polC [Listeria monocytogenes FSL N3-165]
 gi|254829923|ref|ZP_05234578.1| DNA polymerase III PolC [Listeria monocytogenes 10403S]
 gi|254898515|ref|ZP_05258439.1| DNA polymerase III PolC [Listeria monocytogenes J0161]
 gi|254911994|ref|ZP_05262006.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|254936321|ref|ZP_05268018.1| polC [Listeria monocytogenes F6900]
 gi|255026351|ref|ZP_05298337.1| DNA polymerase III PolC [Listeria monocytogenes FSL J2-003]
 gi|284801705|ref|YP_003413570.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284994847|ref|YP_003416615.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|258601084|gb|EEW14409.1| polC [Listeria monocytogenes FSL N3-165]
 gi|258608911|gb|EEW21519.1| polC [Listeria monocytogenes F6900]
 gi|284057267|gb|ADB68208.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284060314|gb|ADB71253.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|293589958|gb|EFF98292.1| DNA polymerase III [Listeria monocytogenes J2818]
          Length = 1444

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +
Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL +A
Sbjct: 488 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 544

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           R  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 545 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577


>gi|240146857|ref|ZP_04745458.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
 gi|257200990|gb|EEU99274.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
          Length = 697

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 19/172 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--- 66
           +VFD+ETTG     ++IIEIGAV+++    T R F  F+ P      P   ++  +T   
Sbjct: 476 VVFDLETTGFSPDKNKIIEIGAVKVVHGEITER-FSTFVNP----EVPIPYRIEELTSIR 530

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124
           D+ + D P   +I  +F +F    +A  +AHNA FD+ FI  N E Q I K+      II
Sbjct: 531 DDMVIDAPKIETILPQFMEFCG--DAIMVAHNADFDMSFIIKNCERQGIEKE----FTII 584

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+++AR   P  +R  L+++ K  G+++ +   H A+ D+   +++++K +
Sbjct: 585 DTVALARILLPQLNRFKLDTVAKALGVSLENH--HRAVDDAGCTAEIFVKFV 634


>gi|313608987|gb|EFR84729.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL F2-208]
          Length = 1447

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +
Sbjct: 433 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 490

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL +A
Sbjct: 491 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 547

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           R  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 548 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 580


>gi|16800425|ref|NP_470693.1| DNA polymerase III PolC [Listeria innocua Clip11262]
 gi|21263558|sp|Q92C34|DPO3_LISIN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16413830|emb|CAC96588.1| polC [Listeria innocua Clip11262]
 gi|313619136|gb|EFR90925.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           innocua FSL S4-378]
          Length = 1444

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +
Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K       +  +F ++  +     +AHNA FD+GFIN   +++  +    + ++DTL +A
Sbjct: 488 KGSDPIDVVLKQFREWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAK-NAVVDTLELA 544

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           R  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 545 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577


>gi|145223545|ref|YP_001134223.1| hypothetical protein Mflv_2958 [Mycobacterium gilvum PYR-GCK]
 gi|145216031|gb|ABP45435.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK]
          Length = 617

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 28/211 (13%)

Query: 10  IVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +V D+ETTG  +  DR   I EIGAV++    +    F   + P GR   P+ + L GIT
Sbjct: 23  VVVDLETTGGRASGDRHDAITEIGAVKVRG-GEVLGEFATLVDP-GRAIPPQIVALTGIT 80

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              + D P   S+   F +F   + A  +AHNA FD+GF+ A  +R N+ P     ++ T
Sbjct: 81  SAMVYDAPRIESVLPSFLEFC--RGAVLVAHNAGFDMGFLRAAAER-NQVPWPKPPVLCT 137

Query: 127 LSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGS 179
           +++ARR     + PS +  L++L + +G + +    H AL D+    DV   ++  VG  
Sbjct: 138 VALARRVLTRDEAPSVK--LSALARLFGASTT--PTHRALDDARATVDVLHALIERVG-- 191

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
             N G  T     + E +  +P+++  +R K
Sbjct: 192 --NQGVHT-----YAELRAYLPDVTPAQRRK 215


>gi|254252965|ref|ZP_04946283.1| DNA polymerase III [Burkholderia dolosa AUO158]
 gi|124895574|gb|EAY69454.1| DNA polymerase III [Burkholderia dolosa AUO158]
          Length = 375

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 93/166 (56%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  S   RI EIG VE+     +  T+   + P G+   P   +L GI+D  
Sbjct: 16  VFVDLETTGGSSAEHRITEIGVVEVGPLGVS--TWTTLVNP-GQSIPPFIQQLTGISDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+S+    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ +
Sbjct: 73  VRDAPSFASLAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGYA-FNPD-VLCTVRL 128

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  +R+ L++L +R+G+  S  ++H AL D+ LL   + ++
Sbjct: 129 SRALFPREARHGLDALIERHGLVPS--ARHRALADADLLWQFWRQL 172


>gi|226223921|ref|YP_002758028.1| DNA polymerase III (alpha subunit) [Listeria monocytogenes
           Clip81459]
 gi|225876383|emb|CAS05092.1| Putative DNA polymerase III (alpha subunit) [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 1444

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +
Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL +A
Sbjct: 488 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 544

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           R  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 545 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577


>gi|254932365|ref|ZP_05265724.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|293583921|gb|EFF95953.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|328475042|gb|EGF45830.1| DNA polymerase III PolC [Listeria monocytogenes 220]
          Length = 1444

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +
Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL +A
Sbjct: 488 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 544

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           R  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 545 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577


>gi|329117787|ref|ZP_08246504.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parauberis NCFD 2020]
 gi|326908192|gb|EGE55106.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parauberis NCFD 2020]
          Length = 1465

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 74/146 (50%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++         F  F+ P G   S    +L GITD  
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMYK-GNILEQFDEFIDP-GHPLSAFTTELTGITDNH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L        +  EF  F   ++   +AHNA FDVGF+NA   R N  P     +IDTL  
Sbjct: 486 LVGAKPLHQVLVEFQAFC--KDTVLVAHNASFDVGFMNANYARENL-PKITQPVIDTLEF 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ + + H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVALDH 568


>gi|315443891|ref|YP_004076770.1| exonuclease, DNA polymerase III subunit epsilon family
           [Mycobacterium sp. Spyr1]
 gi|315262194|gb|ADT98935.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Mycobacterium sp. Spyr1]
          Length = 617

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 28/211 (13%)

Query: 10  IVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +V D+ETTG  +  DR   I EIGAV++    +    F   + P GR   P+ + L GIT
Sbjct: 23  VVVDLETTGGRASGDRHDAITEIGAVKVRG-GEVLGEFATLVDP-GRAIPPQIVALTGIT 80

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              + D P   S+   F +F   + A  +AHNA FD+GF+ A  +R N+ P     ++ T
Sbjct: 81  SAMVYDAPRIESVLPSFLEFC--RGAVLVAHNAGFDMGFLRAAAER-NQVPWPKPPVLCT 137

Query: 127 LSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGS 179
           +++ARR     + PS +  L++L + +G + +    H AL D+    DV   ++  VG  
Sbjct: 138 VALARRVLTRDEAPSVK--LSALARLFGASTT--PTHRALDDARATVDVLHALIERVG-- 191

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
             N G  T     + E +  +P+++  +R K
Sbjct: 192 --NQGVHT-----YAELRAYLPDVTPAQRRK 215


>gi|150020931|ref|YP_001306285.1| DNA polymerase III PolC [Thermosipho melanesiensis BI429]
 gi|149793452|gb|ABR30900.1| DNA polymerase III, alpha subunit [Thermosipho melanesiensis BI429]
          Length = 1362

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 69/121 (57%), Gaps = 5/121 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTG ++K D IIEIGAV+  D  K   TF  F+ P  +  S    KL GITDE +
Sbjct: 346 VFDLETTGTNAKFDEIIEIGAVKYRD-GKVINTFSSFVKPT-KSISEFTQKLTGITDEMV 403

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD  S   +F EF  F +      +AHNA FD GFI    +R+    LD +  +DTL ++
Sbjct: 404 KDAKSIEEVFPEFLKFID--GTVLVAHNADFDYGFIREVNRRLYNKELDFAY-LDTLKLS 460

Query: 131 R 131
           +
Sbjct: 461 K 461


>gi|332311763|gb|EGJ24858.1| DNA polymerase III polC-type [Listeria monocytogenes str. Scott A]
          Length = 1457

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +
Sbjct: 443 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 500

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL +A
Sbjct: 501 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 557

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           R  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 558 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 590


>gi|313665237|ref|YP_004047108.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           leachii PG50]
 gi|312949309|gb|ADR23905.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           leachii PG50]
          Length = 1480

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 5/169 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + + FD+ETTGL  + D IIE GA+E    +   +   + + P  +       KL  I +
Sbjct: 432 KMVFFDLETTGLSPELDEIIEFGAIEYNFKTGERKKIDILIKPKAKLKDFTK-KLTNINE 490

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L++KP     F +       ++A  +AHNA FD  F++   Q++    L+ + IIDTL
Sbjct: 491 EMLENKPGIEVAFKQINQII--KDAILVAHNANFDYTFLSHWSQKLGYGKLE-NTIIDTL 547

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +I+R  +P  ++  L SL KR  I+      H    D+ +L+D+Y +M+
Sbjct: 548 TISRIIYPELKSHRLGSLAKRVNISYDPSVAHRGDYDADILADIYERML 596


>gi|119898701|ref|YP_933914.1| DNA polymerase III epsilon subunit-like protein [Azoarcus sp. BH72]
 gi|119671114|emb|CAL95027.1| DNA polymerase III epsilon chain-like protein [Azoarcus sp. BH72]
          Length = 734

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 18/172 (10%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGL+ S+ D II+IGAV +L+     +  F+  + P  R    E+ ++HGIT +
Sbjct: 546 VFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDPC-RPLPEESARVHGITAD 604

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR----II 124
            L  +P   ++   F  F    +   +AHNA FD+ F+        K+ L   R    ++
Sbjct: 605 MLAGQPVIEAVLPSFHAF--AADTVLVAHNAAFDMRFLQL------KEDLTGLRFDQPVL 656

Query: 125 DTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DTL ++   HP+   + L ++ +R GIT+  R  H AL D+ + ++V++K++
Sbjct: 657 DTLLLSAVIHPNQDSHRLEAIAERLGITVVGR--HTALGDAMVTAEVFLKLV 706


>gi|46907546|ref|YP_013935.1| DNA polymerase III PolC [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093944|ref|ZP_00231681.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes str. 4b H7858]
 gi|254824621|ref|ZP_05229622.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300765440|ref|ZP_07075422.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL N1-017]
 gi|67460321|sp|Q720A2|DPO3_LISMF RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|46880814|gb|AAT04112.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47017682|gb|EAL08478.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes str. 4b H7858]
 gi|293593859|gb|EFG01620.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300513877|gb|EFK40942.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL N1-017]
 gi|328468603|gb|EGF39603.1| DNA polymerase III PolC [Listeria monocytogenes 1816]
          Length = 1444

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +
Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL +A
Sbjct: 488 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 544

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           R  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 545 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577


>gi|154484752|ref|ZP_02027200.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC
           27560]
 gi|149734600|gb|EDM50517.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC
           27560]
          Length = 1474

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 98/181 (54%), Gaps = 17/181 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---KLHG 64
           R +VFD+ETTG  +K+D+IIEIGAV++ +    +R F  F+ P      P      KL  
Sbjct: 408 RYVVFDLETTGFSAKSDKIIEIGAVKVENGKIIDR-FSTFVNP----EIPIPFRIEKLTS 462

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I DE + D P    I  +F +F   +++  +AHN+ FD+ FI A  +R  +D      +I
Sbjct: 463 INDEMVIDAPKIEEILPQFMEFC--KDSVMVAHNSDFDMSFIEANCKR--QDLECDFTVI 518

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQI 181
           DT++++R       R  L+++ K  GI + H   H A+ D+   + +++K+  M+ G  I
Sbjct: 519 DTVAMSRYLIIGLGRYKLDNVAKALGIVLDHH--HRAVDDAECTALIFLKLCKMLEGKGI 576

Query: 182 N 182
           +
Sbjct: 577 D 577


>gi|225388986|ref|ZP_03758710.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme
           DSM 15981]
 gi|225044966|gb|EEG55212.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme
           DSM 15981]
          Length = 1561

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 96/174 (55%), Gaps = 20/174 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66
           +VFDIETTG   + +RIIEIGAV++ D   T++ F  F+ P    + P   +  KL  I 
Sbjct: 539 VVFDIETTGFSPEKNRIIEIGAVKVTDGKITDK-FSTFVNP----DVPIPFDIEKLTSIN 593

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN--AELQRINKDPLDPSRII 124
           D  +   P    I  +F +F    +A  +AHNA FDVGFI   AE Q +  +P     ++
Sbjct: 594 DAMVLPYPKIDVILPQFLEFVG--DAALVAHNASFDVGFIGHYAEKQGLAFNP----TVL 647

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMM 175
           DT+++AR   P+ +R  L+++ K   I+++  HR+   A   + + +  ++KM+
Sbjct: 648 DTVTMARLLLPNLNRFKLDTVAKALNISLANHHRAVDDAGCTAEIFA-AFVKML 700


>gi|258611758|ref|ZP_05711628.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
 gi|258605945|gb|EEW18553.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
          Length = 1144

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +
Sbjct: 130 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 187

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL +A
Sbjct: 188 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 244

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           R  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 245 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 277


>gi|161986630|ref|YP_445565.2| hypothetical protein SRU_1441 [Salinibacter ruber DSM 13855]
          Length = 563

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 13/176 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D+ETTG    +DRI+EIGAV++ D S  +R FQ  + P   ++ P  + K+ GIT  
Sbjct: 9   VVTDLETTGTTPDDDRIMEIGAVKVRDGSVVDR-FQQLVNPQ--QSVPGRITKMTGITTG 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P    +  ++  F    +   +AHN  FD  F++AELQR+  + L P+  + T+ 
Sbjct: 66  MVFEAPPADEVLPDYRAFLG--DGILVAHNVSFDGSFLDAELQRMGDETL-PNETLCTVR 122

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +ARR  P      L+ L + Y I +  R  H AL D+   S V  + +   SQ+ F
Sbjct: 123 LARRLLPGLDSKGLSRLAQFYDIDVEGR--HRALGDAEATSVVLRRFV---SQLAF 173


>gi|323342031|ref|ZP_08082264.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464456|gb|EFY09649.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 1433

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDE 68
           + FD+ETTGL +  D IIE G V L++  +  +  Q F+  P   +  P   +L  ITD 
Sbjct: 386 VSFDLETTGLSNYYDHIIEFGGV-LIENGRVVKKMQTFIKAPVPVR--PFIQELTNITDA 442

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L + PS      E  +F  +     +AHNA+FD+ FI   L+RI K+P+  + +IDTL 
Sbjct: 443 DLVNAPSIEEAMDEILEFLGDH--VLVAHNAQFDIDFIQETLRRIGKEPIQ-NAVIDTLD 499

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R    + R+  L S+ +   I       H A  D+ +LS V+++M+
Sbjct: 500 LSRALFDNRRSYRLGSIARFMRIGYDEGVAHRADYDAEVLSLVFLEML 547


>gi|319937397|ref|ZP_08011804.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
 gi|319807763|gb|EFW04356.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
          Length = 1438

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD+ETTGL   +D I E GAV++ +  +  R  Q  + PN R  S +   L  IT+E 
Sbjct: 398 ISFDLETTGLSVMDDDITEFGAVKIKNGQEIGR-LQSLIKPNKRI-SQKITNLTHITNED 455

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTLS 128
           +KD P+      +  +FF +     +AHNA FDVGF+N  LQR   + L +P+  ID+L+
Sbjct: 456 VKDAPTIQEYIPKILEFFGDDVI--VAHNATFDVGFLNEILQRHGYEKLKNPA--IDSLA 511

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A +  P  +   L ++ + Y I       H A  D+ +L+ V+  M+
Sbjct: 512 LAWKLLPQLKGFRLGNVARYYRIAYDGDDAHRADYDAEVLAGVFNMML 559


>gi|169629058|ref|YP_001702707.1| hypothetical protein MAB_1971c [Mycobacterium abscessus ATCC 19977]
 gi|169241025|emb|CAM62053.1| Probable DNA polymerase III epsilon subunit [Mycobacterium
           abscessus]
          Length = 600

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 10/164 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG  ++ND I EIGAV++    +        + P  R   P+ ++L GIT   
Sbjct: 29  VVVDLETTGGSAENDAITEIGAVKVRG-GEVLGELATLVDPQ-RSLPPQIVRLTGITSAM 86

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P  + +   F +F   + A  +AHNA FD+GF+ A  ++   D   P+ ++ T+ +
Sbjct: 87  LVDAPPIAQVLPAFLEF--ARGAVLVAHNAGFDIGFLKAAARQCGIDWPQPA-VLCTVRL 143

Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ARR   +  + R  L +L +  G + +    H AL D+    DV
Sbjct: 144 ARRVLSRDEAPRVSLGALAQLLGASTT--PNHRALDDARATVDV 185


>gi|269302439|gb|ACZ32539.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Chlamydophila pneumoniae LPCoLN]
          Length = 249

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 3/140 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D E TGLD K DRIIEI AV    +     + +  + P  R  S E+ ++H I++  L
Sbjct: 11  CLDCEMTGLDVKKDRIIEIAAVRF-TFDSVISSIEFLINPE-RVVSAESQRVHHISNAML 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D+P  + +F +   FF E +   + H+  FD+  ++ E++RI +  L    IIDTL +A
Sbjct: 69  RDQPKIAEVFPQIKAFFKEGDY-IVGHSVGFDLQVLSQEMERIGETFLSKYTIIDTLRLA 127

Query: 131 RRKHPSSRNDLNSLCKRYGI 150
           +    S  N L SL   + +
Sbjct: 128 KEYGDSPNNSLESLAVHFNV 147


>gi|118586857|ref|ZP_01544291.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163]
 gi|290890494|ref|ZP_06553569.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429]
 gi|118432689|gb|EAV39421.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163]
 gi|290479890|gb|EFD88539.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429]
          Length = 1437

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 10/181 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           +FDIETTGL + ND+II++ AV++ +    + TF  F+ P G   S + + L GITD+ +
Sbjct: 412 IFDIETTGLSAVNDKIIQLSAVKMKNGVVLD-TFDQFINP-GFPLSEQTINLTGITDDLV 469

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           K+    + +   F  F+         HN  KFD GF+N  L  ++K P   + +IDTL++
Sbjct: 470 KNSKPEAEVLKMFQQFY--AGTILAGHNVIKFDYGFVNHALA-VHKLPKINTLVIDTLNL 526

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           AR  +P+  R  L+ L K++ + + H   H   +D    + + + + +  ++ N+G   +
Sbjct: 527 ARWLYPNFGRYTLDFLSKKFSVNLEH---HHRAIDDSTATGMLLHIFLKEAEENYGVVYD 583

Query: 189 E 189
           E
Sbjct: 584 E 584


>gi|313905074|ref|ZP_07838444.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
 gi|313470144|gb|EFR65476.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
          Length = 1536

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 15/170 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK---LHGIT 66
           +VFDIETTGL +   +IIEIGAV  +++ +    F  F+ P      P   K   L  IT
Sbjct: 503 VVFDIETTGLSNLTCKIIEIGAVR-VEHGEVVSRFSEFINP----EVPIPFKITELTSIT 557

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  ++D P    I  +F +F    +A  +AHNA FD GFI  E +R   D       +DT
Sbjct: 558 DAMVEDAPVIEEILPKFREFCG--DAVLVAHNADFDTGFIKMECERQKLDW--EFTYVDT 613

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +++A+   P  SR  L+++ K  G+ + H   H A+ D+   + +++K +
Sbjct: 614 VAMAQMLLPGLSRFKLDTVAKAVGVPLEHH--HRAVDDAECTAWIFVKFV 661


>gi|189425539|ref|YP_001952716.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ]
 gi|189421798|gb|ACD96196.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ]
          Length = 168

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 9/171 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTGL  +N  R+IEIGAV + +   T       L  +G   S  A ++HGI+
Sbjct: 3   RVIVVDTETTGLSVRNQGRVIEIGAVAVENGQITAEL--ATLINSGTPISYGAYRVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ L  +P+   ++  F +F    N+  +AHNA FD  FIN EL  +     +P     T
Sbjct: 61  EQMLAGRPTPQEVWPWFLEFAG--NSPLVAHNAAFDRAFINHELHLLGMSLANPWHC--T 116

Query: 127 LSIARRKHPSSRND-LNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKMM 175
           + ++RRK P   N  L ++ K  +G       +H AL D+ + + V+++++
Sbjct: 117 VRLSRRKLPRLMNHKLETVYKHLFGELPEEVQRHRALDDARMAARVWVELL 167


>gi|256617164|ref|ZP_05474010.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|256596691|gb|EEU15867.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
          Length = 1440

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 88/159 (55%), Gaps = 13/159 (8%)

Query: 10  IVFDIETT-GLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGIT 66
           +VFD+ETT GL +  D IIE+ AV++    K N   TF+ F+ P G   S   + L GIT
Sbjct: 415 VVFDVETTTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGIT 470

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE ++   S   +   F +F   +    +AHNA FD+GF+N    + +  P   + +IDT
Sbjct: 471 DEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDT 527

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           L ++R  +P  ++  LN+L K++G+ +     H A+ DS
Sbjct: 528 LELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 564


>gi|171315543|ref|ZP_02904779.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171099380|gb|EDT44118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 375

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 93/166 (56%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  S   RI EIG VE+     +  T+   + P G+   P   +L GI+DE 
Sbjct: 16  VFVDLETTGGSSAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQSIPPFIQQLTGISDEM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+S+    ++  + +   ++AHNA FD GF+ AE  R      +P  ++ T+ +
Sbjct: 73  VRDAPSFASLAPTLFERLDGKL--FVAHNASFDRGFLRAEFDRAGIA-FNPD-VLCTVRL 128

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  +R+ L++L +R+G+  +  ++H AL D+ LL   + ++
Sbjct: 129 SRALFPREARHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172


>gi|255505426|ref|ZP_05346027.3| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
 gi|255267960|gb|EET61165.1| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
          Length = 1010

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 90/167 (53%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG+ SK D +IEI AV+ ++  +    F   + P GRK  P A +++GITD+ 
Sbjct: 26  VVFDLETTGISSKYDEVIEISAVK-VEAGQVTGEFSTLVNP-GRKIPPAASRVNGITDKM 83

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLS 128
           +     FS +  +F+ F  +     + HN   FD+ F+  + ++  +   D +  +DTL 
Sbjct: 84  VAGALPFSEVLGDFFAFAGD--FVLVGHNINSFDMKFLYRDAKKYFRKVPD-NDYVDTLL 140

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +AR   P  S + L  L + YG  IS +  H AL D H+   VY K+
Sbjct: 141 LARAALPELSHHRLVDLAEHYG--ISAKGAHRALNDCHMNQKVYGKL 185


>gi|225871273|ref|YP_002747220.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047]
 gi|225700677|emb|CAW95265.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047]
          Length = 1465

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++         F  F+ P G   S    +L GITD  
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFK-GNIIEQFDEFINP-GHPLSAFTTELTGITDNH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L        +   F  F   Q    +AHNA FDVGF+NA   R     +    +IDTL +
Sbjct: 486 LVGAKPIQQVLEAFQAFC--QGTILVAHNASFDVGFMNANYDRYGLAKIS-QPVIDTLEL 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLEH 568


>gi|21684658|gb|AAL87523.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps]
          Length = 212

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 5/156 (3%)

Query: 19  LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSS 78
           L  +  R+ E+G VE+     T   F  ++ P  R     A  +HG+ DEFL  +P+FS+
Sbjct: 1   LSPRYHRLAEVGCVEIACGRITGNYFHAYINPRQRMTR-GAQAVHGLRDEFLATQPAFSA 59

Query: 79  IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRIIDTLSIARRKHPS 136
           I      F  +     + HN  FD+ F++A L      P       +IDT+    ++   
Sbjct: 60  IAQRLLFFLCQST--LVGHNLSFDLNFLDAGLATAGFMPAARYCHGVIDTMCHLAQRGSR 117

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            R  L++ C   G+    R++HGAL+D+ LL++ ++
Sbjct: 118 RRFSLDACCDMLGVRRGDRARHGALVDAVLLAEAFV 153


>gi|116694719|ref|YP_728930.1| exconuclease [Ralstonia eutropha H16]
 gi|113529218|emb|CAJ95565.1| Exconuclease [Ralstonia eutropha H16]
          Length = 528

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 11/169 (6%)

Query: 8   RKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IVF D+ETTG D++ DRI EIG VE+         +   L P G    P   ++ GIT
Sbjct: 28  RPIVFVDLETTGADAQRDRITEIGVVEVGPDGIIE--WDTLLDP-GMSIPPFIQRMTGIT 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++ +PSF S+     +    Q   ++AHNA+FD GF+    +R        + ++ T
Sbjct: 85  EEMVRGQPSFESLAESLAERL--QGRLFVAHNARFDYGFLKNAFRRAGVT--FRADVLCT 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + ++R   PS  R+ L++L  R+G+T   + +H AL D+ LL   + K+
Sbjct: 141 VRLSRSLFPSVERHGLDALIARFGLT--PKGRHRALADAELLWQFWQKI 187


>gi|291538542|emb|CBL11653.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis XB6B4]
          Length = 905

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 95/172 (55%), Gaps = 19/172 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--- 66
           +VFD+ETTG     ++IIEIGAV+ +++ +    F  F+ P      P   ++  +T   
Sbjct: 476 VVFDLETTGFSPDKNKIIEIGAVK-VEHGEITERFSTFVNP----EVPIPYRIEELTSIR 530

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124
           D+ + D P   +I  +F +F    +A  +AHNA FD+ FI  N E Q I K+      II
Sbjct: 531 DDMVIDAPKIETILPQFMEFCG--DAIMVAHNADFDMSFIIKNCERQGIEKE----FTII 584

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+++AR   P  +R  L+++ K  G+++ +   H A+ D+   +++++K +
Sbjct: 585 DTVALARILLPQLNRFKLDTVAKALGVSLENH--HRAVDDAGCTAEIFVKFV 634


>gi|225867817|ref|YP_002743765.1| DNA polymerase III PolC-type [Streptococcus equi subsp.
           zooepidemicus]
 gi|197941223|gb|ACH78331.1| DNA polymerase [Streptococcus equi subsp. zooepidemicus]
 gi|225701093|emb|CAW97928.1| DNA polymerase III PolC-type [Streptococcus equi subsp.
           zooepidemicus]
          Length = 1465

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++         F  F+ P G   S    +L GITD  
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFK-GNIIEQFDEFINP-GHPLSAFTTELTGITDNH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L        +   F  F   Q    +AHNA FDVGF+NA   R     +    +IDTL +
Sbjct: 486 LVGAKPIQQVLEAFQAFC--QGTILVAHNASFDVGFMNANYDRYGLAKIS-QPVIDTLEL 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLEH 568


>gi|220931624|ref|YP_002508532.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
 gi|219992934|gb|ACL69537.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
          Length = 1397

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 28/232 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL+   + IIEIGAV+ +   K    F  F+ P G     +  +L GIT+E 
Sbjct: 386 VVFDLETTGLNKFKNEIIEIGAVK-VKSGKVIDEFSSFVKP-GESIPNKITELTGITNEM 443

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P    +  +F +F +   +  +AHNA FD GF+   L++  +  +    ++DTL++
Sbjct: 444 VSRAPDIEGVIGDFLEFID--GSILVAHNADFDYGFLQVALKKTGQGDIS-YPVLDTLTL 500

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +R   P  S + LN+L +   + + +   H A+ D+   S+++I  +   S I       
Sbjct: 501 SRALLPDLSNHKLNTLARHLNVRLDNH--HRAVEDARATSEIFINFL---SNIK------ 549

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
                 E  +TVP I+ L       T+I   EL  +   I    K  + D Y
Sbjct: 550 -----NEGIETVPGINRLS------TKINWRELPTYHTVIFAKNKQGLKDIY 590


>gi|240142703|ref|YP_002967216.1| Protein with DNA-directed DNA polymerase-like domain
           [Methylobacterium extorquens AM1]
 gi|240012650|gb|ACS43875.1| Protein with DNA-directed DNA polymerase-like domain
           [Methylobacterium extorquens AM1]
          Length = 754

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 9/169 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTGL   N DR+IE+GAVE++D  +  R FQ    P G   S     + GI+
Sbjct: 543 RFVVIDFETTGLSPNNGDRVIEVGAVEIVD-GRIGRRFQSLANP-GFPVSARITAITGIS 600

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  L D P  + +  E   F   + A  +AHNA FD  F+ AE++R+     D   ++ T
Sbjct: 601 NAMLVDAPPLAEVIREVSAFI--EGATLVAHNAGFDRRFLQAEMERLGL--WDDREMLCT 656

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + + +R +P      L  L +  G+ +   + H AL D+   +++++ M
Sbjct: 657 MRLGKRAYPGLGSYKLAFLAEHAGVALPD-AMHRALADAMATAELFLVM 704


>gi|195978859|ref|YP_002124103.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975564|gb|ACG63090.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 1465

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + N+ +I+I A ++         F  F+ P G   S    +L GITD  
Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFK-GNIIEQFDEFINP-GHPLSAFTTELTGITDNH 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L        +   F  F   Q    +AHNA FDVGF+NA   R     +    +IDTL +
Sbjct: 486 LVGAKPIQQVLEAFQAFC--QGTILVAHNASFDVGFMNANYDRYGLAKIS-QPVIDTLEL 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+ +++ H
Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLEH 568


>gi|170698522|ref|ZP_02889593.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170136606|gb|EDT04863.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 375

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 93/166 (56%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  S   RI EIG VE+     +  T+   + P G+   P   +L GI+DE 
Sbjct: 16  VFVDLETTGGSSAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQAIPPFIQQLTGISDEM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+S+     +  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ +
Sbjct: 73  VRDAPSFASLAPALVERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRL 128

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  +R+ L++L +R+G+  +  ++H AL D+ LL   + ++
Sbjct: 129 SRALFPREARHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172


>gi|116495060|ref|YP_806794.1| DNA polymerase III PolC [Lactobacillus casei ATCC 334]
 gi|122263523|sp|Q038M0|DPO3_LACC3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116105210|gb|ABJ70352.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           casei ATCC 334]
          Length = 1444

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 6/152 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D++IE+ AV++ D  K    F+  + P G   S   + L  ITD+ 
Sbjct: 422 VVFDVETTGLSAVYDKVIELAAVKMKD-GKVIDQFEEMIDP-GFPLSELTINLTHITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    S   +F  F  F +   A  + HN  FDVGF++   +R     +D + +IDTL +
Sbjct: 480 VHGSKSEVDVFKLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLEL 536

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160
           +R  HP  +N  L++L K+Y +++ H  +  A
Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEHHHRANA 568


>gi|227534929|ref|ZP_03964978.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187685|gb|EEI67752.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 1437

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 6/152 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D++IE+ AV++ D  K    F+  + P G   S   + L  ITD+ 
Sbjct: 415 VVFDVETTGLSAVYDKVIELAAVKMKD-GKVIDQFEEMIDP-GFPLSELTINLTHITDDM 472

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    S   +F  F  F +   A  + HN  FDVGF++   +R     +D + +IDTL +
Sbjct: 473 VHGSKSEVDVFKLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLEL 529

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160
           +R  HP  +N  L++L K+Y +++ H  +  A
Sbjct: 530 SRMLHPERKNHKLDTLAKQYKVSLEHHHRANA 561


>gi|116491013|ref|YP_810557.1| DNA polymerase III, alpha subunit ( type) [Oenococcus oeni PSU-1]
 gi|116091738|gb|ABJ56892.1| DNA polymerase III, alpha subunit (gram-positive type) [Oenococcus
           oeni PSU-1]
          Length = 1437

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 10/181 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           +FDIETTGL + ND+II++ AV++ +    + TF  F+ P G   S + + L GITD+ +
Sbjct: 412 IFDIETTGLSAVNDKIIQLSAVKMKNGVVLD-TFDQFINP-GFPLSEQTINLTGITDDLV 469

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           K+    + +   F  F+         HN  KFD GF+N  L  ++K P   + +IDTL++
Sbjct: 470 KNSKPEAEVLKMFQQFY--ARTILAGHNVIKFDYGFVNHALA-VHKLPKINTLVIDTLNL 526

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           AR  +P+  R  L+ L K++ + + H   H   +D    + + + + +  ++ N+G   +
Sbjct: 527 ARWLYPNFGRYTLDFLSKKFSVNLEH---HHRAIDDSTATGMLLHIFLKEAEENYGVVYD 583

Query: 189 E 189
           E
Sbjct: 584 E 584


>gi|21684660|gb|AAL87524.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps]
          Length = 201

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 5/157 (3%)

Query: 19  LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSS 78
           L  +  R+ E+G VE+     T   F  ++ P  R     A  +HG+ DEFL  +P+F +
Sbjct: 1   LSPRYHRLAEVGCVEIAGGRITGNYFHSYINPCQRMTR-GAQAVHGLKDEFLATQPTFGA 59

Query: 79  IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRIIDTLSIARRKHPS 136
           I      F     A  + HN  FD+ F++A L      P     + +IDT+    ++   
Sbjct: 60  IAQRLLYFLC--GAVLVGHNLTFDLNFLDAGLVSAGFMPAARYCAGVIDTMRHLAQRGSR 117

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R  L+ LC R G+    R++HGAL D+ LL++ ++ 
Sbjct: 118 RRFSLDDLCDRLGVRRGERARHGALEDAVLLAEAFVA 154


>gi|302668622|ref|YP_003833070.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
 gi|302397586|gb|ADL36488.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
          Length = 1490

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 9/163 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL    D+IIEIGAV++LD    ++ F  F+ P     SP   KL  ITD+ 
Sbjct: 460 VVFDIETTGLSPTEDKIIEIGAVKMLDGVVVDK-FSEFVDPK-IPISPATTKLTTITDDM 517

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P   ++  +F +F    +   + HN  FD+ FI    +R+          IDT+ +
Sbjct: 518 VIGAPLIDAVVPKFVEFCG--DCVLVGHNVGFDISFIIENCRRLGIK--KEFTCIDTMGL 573

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +R  +P  +++ L ++CK   + + +   H A+ D+   ++++
Sbjct: 574 SRAFYPQQAKHSLEAVCKT--LKVVNEQHHRAISDAECTAEIF 614


>gi|331701344|ref|YP_004398303.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
 gi|329128687|gb|AEB73240.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
          Length = 1439

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD ETTGL +  DR+IE+ AV++ + S     F+ F+ P G   S     L  ITDE 
Sbjct: 421 VVFDTETTGLSAIYDRVIELSAVKMQN-SNVIDQFEEFIDP-GFHLSERTTNLTSITDEM 478

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    S   +F  F +F  +  A  + HN  FD+GF+N    R     +  + IIDTL++
Sbjct: 479 VHGSKSEEEVFKLFREFCGD--AIVVGHNVTFDMGFMNTGYVRHGMHEMQ-NPIIDTLTL 535

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           AR  +P+ R   LN+L K++ +++ H   H A+ D+
Sbjct: 536 ARFLYPNLRGYRLNTLAKKFDVSLEHH--HRAIYDA 569


>gi|291278558|ref|YP_003495393.1| hypothetical protein DEFDS_0125 [Deferribacter desulfuricans SSM1]
 gi|290753260|dbj|BAI79637.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 207

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 106/182 (58%), Gaps = 21/182 (11%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVEL-----LDYSKTNRTFQVFLCPNGRKNSPE 58
           N++   VFDIE+TG++    DRI+EIGAV++     +DY      F V + P G     +
Sbjct: 14  NEVEYCVFDIESTGINPFDGDRIVEIGAVKIKPGFVIDYK---NKFHVLVNP-GIPIPED 69

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           + K+HGITDE + + P     +  F +F   +    +AHNA+ D+ F    L+RI+K+ L
Sbjct: 70  SQKIHGITDEDVANAPDECEAYYNFIEF--AKGCIPVAHNARKDMAF----LRRISKEYL 123

Query: 119 --DPSR-IIDTLSIARRKHPSSR-NDLNSLCKRYGITI-SHRSKHGALLDSHLLSDVYIK 173
             +P   ++DTL+++++ +  SR ++L++L ++Y + I S+  +H AL D+   S ++  
Sbjct: 124 IDEPFEFVLDTLALSKKVNVLSRYHNLDALIEKYNVRIKSNYKRHRALYDAEATSVIFKI 183

Query: 174 MM 175
           MM
Sbjct: 184 MM 185


>gi|239631345|ref|ZP_04674376.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066623|ref|YP_003788646.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang]
 gi|239525810|gb|EEQ64811.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300439030|gb|ADK18796.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus casei str. Zhang]
          Length = 1444

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 6/152 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D++IE+ AV++ D  K    F+  + P G   S   + L  ITD+ 
Sbjct: 422 VVFDVETTGLSAVYDKVIELAAVKMKD-GKVIDQFEEMIDP-GFPLSELTINLTHITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    S   +F  F  F +   A  + HN  FDVGF++   +R     +D + +IDTL +
Sbjct: 480 VHGSKSEVDVFKLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLEL 536

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160
           +R  HP  +N  L++L K+Y +++ H  +  A
Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEHHHRANA 568


>gi|191638563|ref|YP_001987729.1| DNA polymerase III PolC [Lactobacillus casei BL23]
 gi|190712865|emb|CAQ66871.1| DNA polymerase III polC-type (PolIII) [Lactobacillus casei BL23]
 gi|327382601|gb|AEA54077.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus casei LC2W]
 gi|327385799|gb|AEA57273.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus casei BD-II]
          Length = 1444

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 6/152 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D++IE+ AV++ D  K    F+  + P G   S   + L  ITD+ 
Sbjct: 422 VVFDVETTGLSAVYDKVIELAAVKMKD-GKVIDQFEEMIDP-GFPLSELTINLTHITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    S   +F  F  F +   A  + HN  FDVGF++   +R     +D + +IDTL +
Sbjct: 480 VHGSKSEVDVFKLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLEL 536

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160
           +R  HP  +N  L++L K+Y +++ H  +  A
Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEHHHRANA 568


>gi|78065586|ref|YP_368355.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
 gi|77966331|gb|ABB07711.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
          Length = 378

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 90/163 (55%), Gaps = 18/163 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG      RI EIG VE+     +  T+   + P G+   P   +L GI+DE 
Sbjct: 17  VFVDLETTGGSPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDEM 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSRIID 125
           ++D PSF+S+    ++  + +   ++AHNA FD GF+ AE +R     N D      ++ 
Sbjct: 74  VRDAPSFASLAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGFAFNPD------VLC 125

Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           T+ ++R   P  +R+ L++L +R+G+  +  ++H AL D+ LL
Sbjct: 126 TVRLSRALFPRETRHGLDALIERHGLVPA--ARHRALADADLL 166


>gi|146341316|ref|YP_001206364.1| DNA-directed DNA polymerase [Bradyrhizobium sp. ORS278]
 gi|146194122|emb|CAL78141.1| hypothetical protein; putative DNA-directed DNA polymerase
           [Bradyrhizobium sp. ORS278]
          Length = 737

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTG  S  DRI EIGAV++ ++    + +   + P  R    + ++L GIT++ 
Sbjct: 564 VVVDIETTGSWSSGDRITEIGAVKVRNHQLVEQ-WHSLINPQ-RPIPAKIVELTGITNQM 621

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D P F  I   F  F  +    ++AHN  FD GF+++E +R+ +    P   + T   
Sbjct: 622 VRDAPVFHEIADSFMAFMGD--GIFVAHNVNFDYGFLSSEFERLERRFRFPK--LCTCVG 677

Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIK 173
            RR++P   +  L  LC  YGI +   HR+   A   +HLL+ +  K
Sbjct: 678 MRRRYPGHTSYGLGKLCAIYGIELDDHHRALCDARAAAHLLNLINTK 724


>gi|289426266|ref|ZP_06428012.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187]
 gi|289153431|gb|EFD02146.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187]
          Length = 584

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G    P +++ L GIT  
Sbjct: 20  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PS S+I   + +F   ++   +AHNA+FD+GF+     + +    DP+ ++DTL+
Sbjct: 76  MVRSAPSLSAILPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 132

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T +    H AL D+    DV   ++  VG    N 
Sbjct: 133 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 186

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 187 GVTTLED 193


>gi|209964314|ref|YP_002297229.1| exonuclease, putative [Rhodospirillum centenum SW]
 gi|209957780|gb|ACI98416.1| exonuclease, putative [Rhodospirillum centenum SW]
          Length = 699

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 90/169 (53%), Gaps = 10/169 (5%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD ETTGL+ S+ D ++ +  V +++    T  TFQ  + P GR     +  +HGITD
Sbjct: 507 VVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINP-GRAIPAASAAIHGITD 565

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + + P   ++   F  F    +A  +AHNA FD+ F+  + QR      D   ++DT+
Sbjct: 566 AMVAEAPRAEAVLPPFRAFVG--DAVLVAHNAAFDLKFLRLK-QRAAGVRFD-GPVLDTM 621

Query: 128 SIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++R+ +     + L+ L  R GI +  R  H A+ DS + + +++++M
Sbjct: 622 ILSRQIQGDHGEHSLDGLAARLGIGLVDR--HSAMGDSLMTAAIFLRLM 668


>gi|15618565|ref|NP_224851.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
           CWL029]
 gi|15836187|ref|NP_300711.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138]
 gi|16752385|ref|NP_444644.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39]
 gi|33242012|ref|NP_876953.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
           TW-183]
 gi|4376954|gb|AAD18794.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029]
 gi|8163364|gb|AAF73628.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila
           pneumoniae AR39]
 gi|8979027|dbj|BAA98862.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138]
 gi|33236522|gb|AAP98610.1| DNA polymerase III [Chlamydophila pneumoniae TW-183]
          Length = 249

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 3/140 (2%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D E TGLD K DRIIEI AV    +     + +  + P  R  S E+ ++H I++  L
Sbjct: 11  CLDCEMTGLDVKKDRIIEIAAVRF-TFDSVISSIEFLINPE-RVVSAESQRVHHISNAML 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D+P  + +F +   FF E +   + H+  FD+  +  E++RI +  L    IIDTL +A
Sbjct: 69  RDQPKIAEVFPQIKAFFKEGDY-IVGHSVGFDLQVLAQEMERIGETFLSKYTIIDTLRLA 127

Query: 131 RRKHPSSRNDLNSLCKRYGI 150
           +    S  N L SL   + +
Sbjct: 128 KEYGDSPNNSLESLAVHFNV 147


>gi|260662302|ref|ZP_05863198.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus fermentum 28-3-CHN]
 gi|260553685|gb|EEX26577.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus fermentum 28-3-CHN]
          Length = 1447

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 13/169 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FDIETTGL +  DRII++ AV++ D    +  F  F+ P G   S +   L  ITD+ 
Sbjct: 428 VIFDIETTGLSAIYDRIIQVSAVKMQDGEVLDH-FDQFIDP-GFHLSEQTTALTSITDDM 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   +   +   F DF +   +    HN  FD+GF+N   +R     +    +IDTL +
Sbjct: 486 VQGSKTEEEVLKLFDDFAD--GSLLAGHNVSFDMGFMNVAYERHGMGQIKQP-VIDTLPL 542

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS----HLLSDVYIK 173
           AR  HP  R   LN+L KR+ +++ H   H A  DS    HLL+ +++K
Sbjct: 543 ARFLHPDFRGYRLNTLSKRFKVSLEHH--HLASYDSEATGHLLA-IFLK 588


>gi|134295037|ref|YP_001118772.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
 gi|134138194|gb|ABO53937.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 375

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 93/166 (56%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG      RI EIG VE+     +  T+   + P G+   P   +L GI+D+ 
Sbjct: 16  VFVDLETTGGSPAEHRITEIGVVEIGPGHMS--TWTTLVNP-GQPIPPFIQQLTGISDDM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+S+    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ +
Sbjct: 73  VRDAPSFASLAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGLA-FNPD-VLCTVKL 128

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +RYG+  +  ++H AL D+ L+   + ++
Sbjct: 129 SRALFPRESRHGLDALIERYGLVPA--ARHRALADADLIWQFWRQL 172


>gi|260589219|ref|ZP_05855132.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
 gi|260540300|gb|EEX20869.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
          Length = 1487

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 15/170 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK---LHGIT 66
           +VFDIETTG  +  D+IIEIGAV++ +   T R F  F+ P      P   +   L  I 
Sbjct: 464 VVFDIETTGFSALKDKIIEIGAVKVENGRITER-FSEFVNP----QIPIPFRIEELTSIN 518

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P+   I  +F  F   +    +AHNA+FD+ FI    + I  +  D   ++DT
Sbjct: 519 DNMVADAPTIDVILPKFEKFC--EGCVMVAHNAEFDMSFIRKNYEDIGIERED--TVVDT 574

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +AR   P  +R  L+++ K  G+++ H   H A+ D+   +D+++K +
Sbjct: 575 VGMARFLLPQLNRFKLDTVAKAVGVSLEHH--HRAVDDASCTADIFVKFI 622


>gi|291521660|emb|CBK79953.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Coprococcus catus GD/7]
          Length = 245

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 24/193 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL    D IIEIGA++++     +R F  F+ P+ +K + +  +L GITD+ 
Sbjct: 6   VVFDLETTGLSPDKDTIIEIGALKVIQGKVADR-FSEFINPH-QKLTQQISELTGITDDM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L    +   +  +F DF   ++   + HN  FD  F     ++ +  P +    IDTL I
Sbjct: 64  LAGARNLQVVVGDFVDFC--EDYVVVGHNLGFDYRFTKMAAEKYHL-PFEHEG-IDTLKI 119

Query: 130 ARRKH---PSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           A+  H   PS    L +LC+ YGI  + +HR+ H AL  + L              +   
Sbjct: 120 AKTVHKDLPS--RSLGALCEHYGIINSSAHRAYHDALATAKLY-----------QTLAHY 166

Query: 185 FKTNEDRFFKEEK 197
           F+T+E + F  EK
Sbjct: 167 FETSEPKLFVPEK 179


>gi|298244280|ref|ZP_06968086.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297551761|gb|EFH85626.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 684

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 17/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTGL    DR+IE+  V     E+LD      TFQ  + P  R+  P  ++  G
Sbjct: 102 VVVDTETTGLRPGPDRVIEVAGVRMRNGEILD------TFQSLVHPE-RRIPPFIVRFTG 154

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ E L D P    I  +F  F   + A  + HN  FDV F+  E Q +   P  P   +
Sbjct: 155 ISPEMLADAPKARDIMPDFLRFI--EGATLVGHNLSFDVNFLTHEAQLLGL-PF-PVEGL 210

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+ ++RR  P  +     +  +Y + I   ++H AL D+ + +DV+ +++
Sbjct: 211 DTILLSRRLLPGLKRFKLDMVAQY-LQIQTHNRHRALGDAQVTADVFARLL 260


>gi|154500376|ref|ZP_02038414.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC
           29799]
 gi|150270881|gb|EDM98164.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC
           29799]
          Length = 1390

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 6/126 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FDIETTGLD++ D IIEIGAV +L   +   TF  F+ P GR  S E ++L  ITD+ 
Sbjct: 370 VCFDIETTGLDNRRDVIIEIGAV-ILRNGEIAETFDTFVSP-GRPLSREIVELTSITDKM 427

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+  PS       F +F  ++     AHNA+FD+GFI AE  R    P + +  IDTL +
Sbjct: 428 LEGAPSQEEAIRAFLEFAGDR--PLAAHNAEFDMGFI-AEGCRRYGIPFEKTS-IDTLIL 483

Query: 130 ARRKHP 135
           A+   P
Sbjct: 484 AQNLLP 489


>gi|331082627|ref|ZP_08331750.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400246|gb|EGG79888.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 1487

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 15/170 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK---LHGIT 66
           +VFDIETTG  +  D+IIEIGAV++ +   T R F  F+ P      P   +   L  I 
Sbjct: 464 VVFDIETTGFSALKDKIIEIGAVKVENGRITER-FSEFVNP----QIPIPFRIEELTSIN 518

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P+   I  +F  F   +    +AHNA+FD+ FI    + I  +  D   ++DT
Sbjct: 519 DNMVADAPTIDVILPKFEKFC--EGCVMVAHNAEFDMSFIRKNYEDIGIERED--TVVDT 574

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +AR   P  +R  L+++ K  G+++ H   H A+ D+   +D+++K +
Sbjct: 575 VGMARFLLPQLNRFKLDTVAKAVGVSLEHH--HRAVDDASCTADIFVKFI 622


>gi|227514713|ref|ZP_03944762.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227086917|gb|EEI22229.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 1447

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 13/169 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FDIETTGL +  DRII++ AV++ D    +  F  F+ P G   S +   L  ITD+ 
Sbjct: 428 VIFDIETTGLSAIYDRIIQVSAVKMQDGEVLDH-FDQFIDP-GFHLSEQTTALTSITDDM 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   +   +   F DF +   +    HN  FD+GF+N   +R     +    +IDTL +
Sbjct: 486 VQGSKTEEEVLKLFDDFAD--GSLLAGHNVSFDMGFMNVAYERHGMGQIKQP-VIDTLPL 542

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS----HLLSDVYIK 173
           AR  HP  R   LN+L KR+ +++ H   H A  DS    HLL+ +++K
Sbjct: 543 ARFLHPDFRGYRLNTLSKRFKVSLEHH--HLASYDSEATGHLLA-IFLK 588


>gi|184155198|ref|YP_001843538.1| DNA polymerase III PolC [Lactobacillus fermentum IFO 3956]
 gi|183226542|dbj|BAG27058.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
           fermentum IFO 3956]
          Length = 1447

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 13/169 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FDIETTGL +  DRII++ AV++ D    +  F  F+ P G   S +   L  ITD+ 
Sbjct: 428 VIFDIETTGLSAIYDRIIQVSAVKMQDGEVLDH-FDQFIDP-GFHLSEQTTALTSITDDM 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   +   +   F DF +   +    HN  FD+GF+N   +R     +    +IDTL +
Sbjct: 486 VQGSKTEEEVLKLFDDFAD--GSLLAGHNVSFDMGFMNVAYERHGMGQIKQP-VIDTLPL 542

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS----HLLSDVYIK 173
           AR  HP  R   LN+L KR+ +++ H   H A  DS    HLL+ +++K
Sbjct: 543 ARFLHPDFRGYRLNTLSKRFKVSLEHH--HLASYDSEATGHLLA-IFLK 588


>gi|313791823|gb|EFS39934.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA1]
          Length = 597

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G    P +++ L GIT  
Sbjct: 33  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ ++DTL+
Sbjct: 89  MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 145

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T +    H AL D+    DV   ++  VG    N 
Sbjct: 146 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 199

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 200 GVTTLED 206


>gi|153954051|ref|YP_001394816.1| DNA polymerase III PolC [Clostridium kluyveri DSM 555]
 gi|219854664|ref|YP_002471786.1| hypothetical protein CKR_1321 [Clostridium kluyveri NBRC 12016]
 gi|146346932|gb|EDK33468.1| PolC [Clostridium kluyveri DSM 555]
 gi|219568388|dbj|BAH06372.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1439

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 9/165 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FDIETTG    ND IIEIGA+++ +  K    F  F+ P  R       +L GITDE 
Sbjct: 427 VIFDIETTGFSMTNDNIIEIGAIKIKE-GKVVGKFSEFVNPE-RPIPLTITQLTGITDEM 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++  S   I  +F +F +  N+  +AHNA FDVGFI      +N    +P  ++DT+ +
Sbjct: 485 VQNCESIKYILPKFMEFID--NSVVVAHNANFDVGFIKKNCMELNLKFKNP--VMDTIPL 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +   P   R  LN + K   + IS  + H A+ D+    ++ ++
Sbjct: 541 CKFLFPELKRFKLNVVAKH--LDISLENHHRAVDDAGATCEILLR 583


>gi|313818253|gb|EFS55967.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA2]
          Length = 597

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G    P +++ L GIT  
Sbjct: 33  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ ++DTL+
Sbjct: 89  MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 145

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T +    H AL D+    DV   ++  VG    N 
Sbjct: 146 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 199

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 200 GVTTLED 206


>gi|313815838|gb|EFS53552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA1]
 gi|314931784|gb|EFS95615.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL067PA1]
 gi|314956043|gb|EFT00441.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA1]
 gi|314958449|gb|EFT02552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA1]
 gi|314976217|gb|EFT20312.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL045PA1]
 gi|315088618|gb|EFT60594.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA1]
 gi|327451091|gb|EGE97745.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA3]
 gi|328753779|gb|EGF67395.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL020PA1]
 gi|328760388|gb|EGF73957.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL099PA1]
          Length = 590

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G    P +++ L GIT  
Sbjct: 26  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 81

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ ++DTL+
Sbjct: 82  MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 138

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T +    H AL D+    DV   ++  VG    N 
Sbjct: 139 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 192

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 193 GVTTLED 199


>gi|94312850|ref|YP_586059.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34]
 gi|93356702|gb|ABF10790.1| DNA polymerase III, epsilon subunit [Cupriavidus metallidurans
           CH34]
          Length = 530

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 11/169 (6%)

Query: 8   RKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IVF D+ETTG D++ DRI EIG VE+       + +   + P      P    L GIT
Sbjct: 33  RPIVFVDLETTGADAQRDRITEIGVVEV--GPDGIQEWDTLVDPL-TSIPPFVQGLTGIT 89

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE ++ +P+F+ I     +    Q   ++AHNA+FD GF+  E +R        + ++ T
Sbjct: 90  DEMVRGQPTFALIAEALAEKL--QGRLFVAHNARFDYGFLKNEFRRAGVT--FRADVLCT 145

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L ++R   PS  R+ L++L  R+G+T   + +H AL D+ LL   + K+
Sbjct: 146 LRLSRSLFPSVERHGLDALIARFGLT--PKGRHRALADAELLWQFWQKI 192


>gi|115350920|ref|YP_772759.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD]
 gi|115280908|gb|ABI86425.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
          Length = 375

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 94/166 (56%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  S   RI EIG VE+     +  T+   + P G+   P   +L GI+D+ 
Sbjct: 16  VFVDLETTGGSSAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQSIPPFIQQLTGISDDM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+S+    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ +
Sbjct: 73  VRDAPSFASLAPTLFERLDGKL--FVAHNASFDRGFLRAEFERAGI-AFNPD-VLCTVRL 128

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  +R+ L++L +R+G+  +  ++H AL D+ LL   + ++
Sbjct: 129 SRALFPREARHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172


>gi|328944876|gb|EGG39036.1| DNA polymerase III PolC [Streptococcus sanguinis SK1087]
          Length = 1462

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++      +  EF +F   Q++  +AHNA FDVGF+N   +R +  P     +IDTL
Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|323350531|ref|ZP_08086193.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
 gi|322123213|gb|EFX94898.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
          Length = 1462

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++      +  EF +F   Q++  +AHNA FDVGF+N   +R +  P     +IDTL
Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|313809712|gb|EFS47433.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA1]
 gi|314915265|gb|EFS79096.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA4]
 gi|314978176|gb|EFT22270.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA2]
 gi|314983574|gb|EFT27666.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA1]
 gi|315098227|gb|EFT70203.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA2]
 gi|327330574|gb|EGE72320.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL097PA1]
 gi|327442625|gb|EGE89279.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA2]
 gi|327445348|gb|EGE92002.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA2]
          Length = 597

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G    P +++ L GIT  
Sbjct: 33  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ ++DTL+
Sbjct: 89  MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 145

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T +    H AL D+    DV   ++  VG    N 
Sbjct: 146 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 199

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 200 GVTTLED 206


>gi|314987763|gb|EFT31854.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA2]
          Length = 587

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G    P +++ L GIT  
Sbjct: 23  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ ++DTL+
Sbjct: 79  MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 135

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T +    H AL D+    DV   ++  VG    N 
Sbjct: 136 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 189

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 190 GVTTLED 196


>gi|294507448|ref|YP_003571506.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8]
 gi|294343776|emb|CBH24554.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8]
          Length = 563

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 93/176 (52%), Gaps = 13/176 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D+ETTG    +DRI+EIGAV++ D +  +R FQ  + P   ++ P  + K+ GIT  
Sbjct: 9   VVTDLETTGTTPDDDRIMEIGAVKVRDGAVVDR-FQQLVNPQ--QSVPGRITKMTGITTG 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P    +  ++  F    +   +AHN  FD  F++AELQR+  + L P+  + T+ 
Sbjct: 66  MVFEAPPADEVLPDYRAFLG--DGILVAHNVSFDGSFLDAELQRMGDETL-PNETLCTVR 122

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +ARR  P      L+ L + Y I +  R  H AL D+   S V  + +   SQ+ F
Sbjct: 123 LARRLLPGLDSKGLSRLAQFYDIDVEGR--HRALGDAEATSVVLRRFV---SQLAF 173


>gi|315282169|ref|ZP_07870636.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           marthii FSL S4-120]
 gi|313614186|gb|EFR87863.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           marthii FSL S4-120]
          Length = 1367

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +
Sbjct: 429 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 486

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL +A
Sbjct: 487 KGSDPIDVVLKRFKEWSGDDIL--VAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 543

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           R  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 544 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 576


>gi|289426896|ref|ZP_06428622.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165]
 gi|295130296|ref|YP_003580959.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Propionibacterium acnes SK137]
 gi|289159985|gb|EFD08163.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165]
 gi|291376452|gb|ADE00307.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Propionibacterium acnes SK137]
 gi|313772552|gb|EFS38518.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL074PA1]
 gi|313802090|gb|EFS43322.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA2]
 gi|313838422|gb|EFS76136.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL086PA1]
 gi|314918505|gb|EFS82336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA1]
 gi|314925502|gb|EFS89333.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA3]
 gi|314963121|gb|EFT07221.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA1]
 gi|314973624|gb|EFT17720.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA1]
 gi|315077585|gb|EFT49643.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA2]
 gi|315084628|gb|EFT56604.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA2]
 gi|327447777|gb|EGE94431.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA1]
 gi|327453554|gb|EGF00209.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA2]
          Length = 584

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G    P +++ L GIT  
Sbjct: 20  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ ++DTL+
Sbjct: 76  MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 132

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T +    H AL D+    DV   ++  VG    N 
Sbjct: 133 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 186

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 187 GVTTLED 193


>gi|332365112|gb|EGJ42875.1| DNA polymerase III PolC [Streptococcus sanguinis SK1059]
          Length = 1462

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++      +  EF +F   Q++  +AHNA FDVGF+N   +R +  P     +IDTL
Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|332359305|gb|EGJ37126.1| DNA polymerase III PolC [Streptococcus sanguinis SK49]
          Length = 1462

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++      +  EF +F   Q++  +AHNA FDVGF+N   +R +  P     +IDTL
Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|327472427|gb|EGF17858.1| DNA polymerase III PolC [Streptococcus sanguinis SK408]
          Length = 1462

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++      +  EF +F   Q++  +AHNA FDVGF+N   +R +  P     +IDTL
Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|327460706|gb|EGF07041.1| DNA polymerase III PolC [Streptococcus sanguinis SK1]
          Length = 1462

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++      +  EF +F   Q++  +AHNA FDVGF+N   +R +  P     +IDTL
Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|325695495|gb|EGD37395.1| DNA polymerase III PolC [Streptococcus sanguinis SK150]
          Length = 1462

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++      +  EF +F   Q++  +AHNA FDVGF+N   +R +  P     +IDTL
Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|325688979|gb|EGD30987.1| DNA polymerase III PolC [Streptococcus sanguinis SK115]
          Length = 1462

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++      +  EF +F   Q++  +AHNA FDVGF+N   +R +  P     +IDTL
Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|324992474|gb|EGC24395.1| DNA polymerase III PolC [Streptococcus sanguinis SK405]
 gi|324995996|gb|EGC27907.1| DNA polymerase III PolC [Streptococcus sanguinis SK678]
 gi|327488780|gb|EGF20579.1| DNA polymerase III PolC [Streptococcus sanguinis SK1058]
          Length = 1462

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++      +  EF +F   Q++  +AHNA FDVGF+N   +R +  P     +IDTL
Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|315080369|gb|EFT52345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL078PA1]
          Length = 597

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G    P +++ L GIT  
Sbjct: 33  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ ++DTL+
Sbjct: 89  MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 145

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T +    H AL D+    DV   ++  VG    N 
Sbjct: 146 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 199

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 200 GVTTLED 206


>gi|314990240|gb|EFT34331.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA3]
          Length = 604

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G    P +++ L GIT  
Sbjct: 40  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 95

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ ++DTL+
Sbjct: 96  MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 152

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T +    H AL D+    DV   ++  VG    N 
Sbjct: 153 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 206

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 207 GVTTLED 213


>gi|237739760|ref|ZP_04570241.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
 gi|229423368|gb|EEO38415.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
          Length = 1449

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 8/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL+S  ++IIEIGAV++      +R  Q  L   G        ++  IT+E 
Sbjct: 423 VVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDRYSQ--LINPGISIPYHITEITSITNEQ 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P    +  +F DF    +A  +AHNA FD+GFI  +++      L+ S +IDTL +
Sbjct: 481 VANQPKIDEVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKEYLNIDLENS-VIDTLQM 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           AR   P   +  L  L K  G+ +     H A+ DS   ++++I
Sbjct: 538 ARDLFPDFKKYGLGDLNKSLGLALEKH--HRAVDDSQATANMFI 579


>gi|327452827|gb|EGE99481.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL092PA1]
          Length = 587

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G    P +++ L GIT  
Sbjct: 23  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ ++DTL+
Sbjct: 79  MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 135

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T +    H AL D+    DV   ++  VG    N 
Sbjct: 136 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 189

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 190 GVTTLED 196


>gi|315085964|gb|EFT57940.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA3]
          Length = 584

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G    P +++ L GIT  
Sbjct: 20  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ ++DTL+
Sbjct: 76  MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 132

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T +    H AL D+    DV   ++  VG    N 
Sbjct: 133 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 186

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 187 GVTTLED 193


>gi|199597102|ref|ZP_03210534.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
 gi|199591906|gb|EDY99980.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
          Length = 1444

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 84/152 (55%), Gaps = 6/152 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P G   S   + L  ITD+ 
Sbjct: 422 VVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDP-GFPLSELTINLTHITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    S   +F  F  F +   A  + HN  FDVGF++   +R     +D + +IDTL +
Sbjct: 480 VHGSKSEEEVFRLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLEL 536

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160
           +R  HP  +N  L++L K+Y +++ H  +  A
Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEHHHRANA 568


>gi|83319984|ref|YP_424323.1| DNA polymerase III, alpha subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283870|gb|ABC01802.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 1479

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 5/169 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + + FD+ETTGL  + D IIE GA+E    +   +   + + P  +       KL  I +
Sbjct: 431 KMVFFDLETTGLSPELDEIIEFGAIEYNFKTGERKKIDILIKPKSKLKDFTK-KLTNINE 489

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L++KP     F E       ++A  +AHNA FD  F++   +++    L+ + IIDTL
Sbjct: 490 EMLENKPGIEVAFKEINQVI--KDAILVAHNANFDYTFLSHWSEKLGYGKLE-NTIIDTL 546

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +I+R  +P  ++  L SL KR  I+      H    D+ +L+D+Y +M+
Sbjct: 547 TISRIIYPELKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERML 595


>gi|322386941|ref|ZP_08060565.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
 gi|321269223|gb|EFX52159.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
          Length = 1462

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++      +  EF +F   Q++  +AHNA FDVGF+N   +R +  P     +IDTL
Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPQITQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|254774974|ref|ZP_05216490.1| hypothetical protein MaviaA2_09919 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 648

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 34/226 (15%)

Query: 10  IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ETTG  S +      D I EIGAV++ D       F   + P  R   P+ ++L 
Sbjct: 46  VVVDLETTGGRSTSTGETAPDAITEIGAVKVRDGVVLGE-FATLVDPQ-RSIPPQIMRLT 103

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           GIT   + D P+  ++   F +F   ++ A  +AHNA FDVGF+ A  Q+ +     P R
Sbjct: 104 GITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRP-R 162

Query: 123 IIDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-- 175
           ++ T+ +ARR     + PS R  L SL + + +T   +  H AL D+    DV   ++  
Sbjct: 163 VLCTVRLARRVLSREEAPSVR--LASLARLFAVTT--QPTHRALDDARATVDVLHALIER 218

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           VG    N G  T     + + +  +P+++  +R K    R+  E L
Sbjct: 219 VG----NQGVHT-----YADLRGYLPDVTPAQRRK----RVLAEGL 251


>gi|325697436|gb|EGD39322.1| DNA polymerase III PolC [Streptococcus sanguinis SK160]
          Length = 1462

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++      +  EF +F   Q++  +AHNA FDVGF+N   +R +  P     +IDTL
Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|324989747|gb|EGC21690.1| DNA polymerase III PolC [Streptococcus sanguinis SK353]
          Length = 1462

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++      +  EF +F   Q++  +AHNA FDVGF+N   +R +  P     +IDTL
Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|313764773|gb|EFS36137.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA1]
 gi|313807207|gb|EFS45694.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA2]
 gi|313813245|gb|EFS50959.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA1]
 gi|313820015|gb|EFS57729.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA1]
 gi|313825546|gb|EFS63260.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA1]
 gi|313830622|gb|EFS68336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL007PA1]
 gi|315096369|gb|EFT68345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL038PA1]
 gi|315101083|gb|EFT73059.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA1]
 gi|327325880|gb|EGE67670.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL096PA2]
 gi|328753125|gb|EGF66741.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA1]
 gi|328759130|gb|EGF72746.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA2]
 gi|332675138|gb|AEE71954.1| hypothetical protein PAZ_c07700 [Propionibacterium acnes 266]
          Length = 587

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G    P +++ L GIT  
Sbjct: 23  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ ++DTL+
Sbjct: 79  MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 135

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T +    H AL D+    DV   ++  VG    N 
Sbjct: 136 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 189

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 190 GVTTLED 196


>gi|225573157|ref|ZP_03781912.1| hypothetical protein RUMHYD_01348 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039486|gb|EEG49732.1| hypothetical protein RUMHYD_01348 [Blautia hydrogenotrophica DSM
           10507]
          Length = 234

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 79/160 (49%), Gaps = 9/160 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGLD + + IIEIGA+++ +  K    F  F+ P   + S     L GIT+E 
Sbjct: 6   VAFDVETTGLDPEQNEIIEIGALKVRN-GKVVERFMKFIRPT-EEISQTITDLTGITNEM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + +  S   +  EF DF  E     I HN  FD  F+      +  D +  S+ IDTL I
Sbjct: 64  VVNAQSREQVIPEFLDFCREDI--LIGHNVAFDYSFMKMGALAVGLDFV--SQGIDTLKI 119

Query: 130 ARRKHPS-SRNDLNSLCKRYGIT--ISHRSKHGALLDSHL 166
           AR+ H       L  LC  Y I    +HR+ H AL  + L
Sbjct: 120 ARKVHGDLESKSLERLCAYYQIENKAAHRAYHDALATAKL 159


>gi|157150704|ref|YP_001451113.1| DNA polymerase III PolC [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075498|gb|ABV10181.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 1462

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++      +  EF +F   Q++  +AHNA FDVGF+N   +R +  P     +IDTL
Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|327332247|gb|EGE73984.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL096PA3]
          Length = 584

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G    P +++ L GIT  
Sbjct: 20  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ ++DTL+
Sbjct: 76  MVRSAPSLSTVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 132

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T +    H AL D+    DV   ++  VG    N 
Sbjct: 133 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 186

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 187 GVTTLED 193


>gi|206561350|ref|YP_002232115.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
 gi|198037392|emb|CAR53327.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
          Length = 375

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 94/166 (56%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  S + RI EIG VE+     +  T+   + P G+   P   +L GI+D  
Sbjct: 16  VFVDLETTGGSSADHRITEIGVVEIGPLGVS--TWTSLVNP-GQAIPPFIQQLTGISDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D P+F+S+    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ +
Sbjct: 73  VRDAPTFASLAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGLT-FNPD-VLCTVRL 128

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+G+  +  ++H AL D+ LL   + ++
Sbjct: 129 SRALFPRESRHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172


>gi|314968043|gb|EFT12142.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA1]
          Length = 584

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G    P +++ L GIT  
Sbjct: 20  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ ++DTL+
Sbjct: 76  MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 132

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T +    H AL D+    DV   ++  VG    N 
Sbjct: 133 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 186

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 187 GVTTFED 193


>gi|258508612|ref|YP_003171363.1| DNA polymerase III PolC [Lactobacillus rhamnosus GG]
 gi|257148539|emb|CAR87512.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
 gi|259649919|dbj|BAI42081.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
          Length = 1444

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 84/152 (55%), Gaps = 6/152 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P G   S   + L  ITD+ 
Sbjct: 422 VVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDP-GFPLSELTINLTHITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    S   +F  F  F +   A  + HN  FDVGF++   +R     +D + +IDTL +
Sbjct: 480 VHGSKSEEEVFRLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLEL 536

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160
           +R  HP  +N  L++L K+Y +++ H  +  A
Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEHHHRANA 568


>gi|227529104|ref|ZP_03959153.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540]
 gi|227350948|gb|EEJ41239.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540]
          Length = 1442

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 80/149 (53%), Gaps = 6/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL +  D++IE+ A ++ D     R F  F+ P G   S +   L  ITDE 
Sbjct: 426 VIFDVETTGLSAIYDKVIELSASKMKDGEVLER-FDEFIDP-GFPLSEQTTNLTSITDEM 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +F  F DF   +      HN  FD+GF+N   +R N + +  + +IDTL +
Sbjct: 484 VQGSKSEEEVFRMFRDFC--EGCIIAGHNVSFDMGFMNTGYRRHNMEEIT-APVIDTLPL 540

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSK 157
           AR  +P  R   LN+L K++ + + H  +
Sbjct: 541 ARFLYPHMRGYRLNTLSKKFKVALEHHHR 569


>gi|314960311|gb|EFT04413.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA2]
          Length = 604

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G    P +++ L GIT  
Sbjct: 40  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 95

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ ++DTL+
Sbjct: 96  MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 152

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T +    H AL D+    DV   ++  VG    N 
Sbjct: 153 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 206

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 207 GVTTLED 213


>gi|260881564|ref|ZP_05404714.2| helicase, UvrD/REP/exonuclease family protein [Mitsuokella
           multacida DSM 20544]
 gi|260848768|gb|EEX68775.1| helicase, UvrD/REP/exonuclease family protein [Mitsuokella
           multacida DSM 20544]
          Length = 874

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 14/159 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+E TG+D   D II+I  + L    K    F+  L    R++  ++ ++H I+D  
Sbjct: 514 VVFDVEATGVDPTRDEIIQIAGLRLGRDGKAKAEFKRLL--RARRSVGDSYRVHKISDAI 571

Query: 70  LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L+ +     ++  EF  F   + A  + HN  +D+  + +EL R+   PL   R  DTL 
Sbjct: 572 LQQEGEEPEAVLREFCAF--AEGAVIVGHNVTYDLSILGSELARLGLPPLSYQRYYDTLD 629

Query: 129 IARRKHPSSRND----LNSLCKRYGITISHRSKHGALLD 163
           I RR +P+  N     L   CK     +SHRS H A+ D
Sbjct: 630 IFRRFYPNLPNHKLEYLGEFCK-----VSHRSTHDAMDD 663


>gi|313823175|gb|EFS60889.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA2]
 gi|313833843|gb|EFS71557.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL056PA1]
 gi|314919771|gb|EFS83602.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA3]
          Length = 604

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G    P +++ L GIT  
Sbjct: 40  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 95

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ ++DTL+
Sbjct: 96  MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 152

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T +    H AL D+    DV   ++  VG    N 
Sbjct: 153 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 206

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 207 GVTTLED 213


>gi|327468385|gb|EGF13870.1| DNA polymerase III PolC [Streptococcus sanguinis SK330]
          Length = 1462

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++      +  EF +F   Q++  +AHNA FDVGF+N   +R +  P     +IDTL
Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|268316801|ref|YP_003290520.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252]
 gi|262334335|gb|ACY48132.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252]
          Length = 565

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 83/168 (49%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG     DRIIE+ AV +       R F   + P GR   P   +L GIT   
Sbjct: 9   VVVDTETTG-SGPADRIIELAAVRVQGGRIVER-FATLINP-GRSVPPFITRLTGITTAM 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128
           L  +PS   +  +F DF    +   +AHN  FD   + AELQRI    P +P+  + TL 
Sbjct: 66  LVGRPSADEVLPDFLDFLG--DGVLVAHNLAFDRKMLEAELQRIGLAWPGNPA--LCTLR 121

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +ARR  P      L+ L + Y I + +R  H AL D+   + V ++++
Sbjct: 122 LARRLLPGLPAKGLDGLIRFYQIPVENR--HRALGDAEATAHVLLRLL 167


>gi|167759386|ref|ZP_02431513.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704]
 gi|167662943|gb|EDS07073.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704]
          Length = 1499

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           +VFD+ETTG     D+IIEIGAV++ +   T R F  F+ P  +   P    +L  ITD+
Sbjct: 463 VVFDLETTGFSPIKDKIIEIGAVKVENGKITER-FSTFVNP--KIPIPFRITQLTSITDQ 519

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   ++  +F +F    +A  +AHNA FDVGFI    +  +  P   S  +DT++
Sbjct: 520 MVMDAPDIDTVLPQFLEFIG--DAVLVAHNASFDVGFIEQNCRYQDIVPNFTS--VDTVA 575

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   P+ S+  LN +     + IS  + H A+ D+   +++++K +
Sbjct: 576 MARILLPTLSKFKLNVVAN--ALHISLENHHRAVDDAGATAEIFVKFV 621


>gi|149915092|ref|ZP_01903620.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. AzwK-3b]
 gi|149810813|gb|EDM70652.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. AzwK-3b]
          Length = 481

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 91/168 (54%), Gaps = 7/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD ETTGL ++ D ++++GAV +L+       T   ++ P GR   P + ++H +TD 
Sbjct: 278 VAFDTETTGLSAQTDDVVQLGAVRVLNGRVVPGETLDTYVNP-GRPIPPASTEIHRVTDG 336

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++    F ++   F  F   ++A  +AHNA FD+ F++    R+  +   P  ++DT+ 
Sbjct: 337 HVRGASDFVTVGRNFHHF--ARDAVLVAHNAPFDLAFLHRFADRMGVEWTHP--VLDTVL 392

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++     ++ ++ L++LC R  ITI    +H A  D+   ++  ++++
Sbjct: 393 LSAVVFGTTEQHSLDALCDRLAITIPDNLRHTAFGDAQATAEALVRLI 440


>gi|160893350|ref|ZP_02074137.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50]
 gi|156865042|gb|EDO58473.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50]
          Length = 1514

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 100/185 (54%), Gaps = 17/185 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           IVFDIETTGL  K ++IIEIGAV++ D  + +R F  F+ P   +  P ++ +L  ITDE
Sbjct: 459 IVFDIETTGLSQKKNKIIEIGAVKVKDGEEIDR-FSEFINP--EEPIPYSIEQLTSITDE 515

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDT 126
            +   P+   I  +F +F  +     +AHNA FD GFI  NA+   +  D    + I+DT
Sbjct: 516 MVMHAPTVDVILPKFLEFCGDDIV--VAHNAAFDTGFIKKNAKDLGMKFD----NTIMDT 569

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           ++++    P   +  L+ +CK   +   H   H A+ D++  + +++K+      +  G 
Sbjct: 570 MTLSHVLLPELGKFTLDRVCKALNVKNEHH--HRAVDDANATAKIFVKLY--EMLVERGV 625

Query: 186 KTNED 190
           KT ED
Sbjct: 626 KTVED 630


>gi|13357937|ref|NP_078211.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762156|ref|YP_001752460.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|13959349|sp|Q9PQB4|DPO3_UREPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|11279168|pir||C82898 DNA polymerase III alpha chain 1 UU377 [imported] - Ureaplasma
           urealyticum
 gi|6899360|gb|AAF30786.1|AE002135_2 DNA polymerase III alpha chain 1 [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827733|gb|ACA32995.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
          Length = 1442

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FDIETTGL    D IIE GAV + +  +     Q F+ P  + N      L  I+ E 
Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAVIMQNNKQIGEKIQFFIKPIQQINE-NVTNLTNISQEM 468

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-DPSRIIDTL 127
           + +     +   +  + F++     +AHN   FD+ FIN  L +   +PL +PS  IDTL
Sbjct: 469 VNNAIDEKTALLKIKEIFDDH--ILVAHNGINFDINFINQRLLKWGLEPLKNPS--IDTL 524

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            I+R  +P   + L ++CK+Y +  +  S H A  D+ +L+DV+  M
Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDESAHRADYDAIVLADVFKVM 571


>gi|323484216|ref|ZP_08089585.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
           WAL-14163]
 gi|323692098|ref|ZP_08106345.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
 gi|323402458|gb|EGA94787.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
           WAL-14163]
 gi|323503898|gb|EGB19713.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
          Length = 1511

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 94/172 (54%), Gaps = 19/172 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66
           +VFDIETTG     +RIIEIGAV + +    ++ F  F+ P    + P   E  KL GI 
Sbjct: 487 VVFDIETTGFSPLKNRIIEIGAVRVEEGRIVDK-FSSFVNP----DVPIPFEIEKLTGIN 541

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124
           D  + D P    +  EF +F   + A  +AHNA FD+ FI  NA  Q +  +P     ++
Sbjct: 542 DNMVLDAPKIDRVLPEFLEFC--RGAVMVAHNAGFDISFIKENARQQGLEFNP----TVL 595

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+S+AR   P+ +R  L+++ K   I +++   H A+ D+   ++++++ +
Sbjct: 596 DTVSLARVLLPNLNRFKLDTVAKELKINLANH--HRAVDDAGATAEIFVRFI 645


>gi|34556664|ref|NP_906479.1| DNA polymerase III subunit epsilon [Wolinella succinogenes DSM
           1740]
 gi|34482378|emb|CAE09379.1| DNA POLYMERASE III EPSILON SUBUNIT DNAQ [Wolinella succinogenes]
          Length = 206

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 86/158 (54%), Gaps = 12/158 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEAL-KLHGI 65
           R  + D+ET G     D+IIEIGA+ L    K   +F+ ++ C    K  PE + K+ GI
Sbjct: 15  RFCIVDVETNGSLPAKDQIIEIGAI-LYQGGKIIDSFESYVFC----KEVPEYITKITGI 69

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E LKD PS   + + F  F    +A ++AHNA FD GF+ A ++R   D L  +R + 
Sbjct: 70  TSEELKDAPSMKEVLTRFRLFLG--DAVFVAHNALFDYGFLGAMMKRSGMDRLH-NRKLC 126

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGAL 161
           T+ +AR+  P+ R  L+ L +   I   +SHR+   AL
Sbjct: 127 TIDLARKTIPADRYGLSFLNEFLEIHTEVSHRAYADAL 164


>gi|118466522|ref|YP_881505.1| hypothetical protein MAV_2300 [Mycobacterium avium 104]
 gi|118167809|gb|ABK68706.1| DNA polymerase III, epsilon subunit [Mycobacterium avium 104]
          Length = 643

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 34/226 (15%)

Query: 10  IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ETTG  S +      D I EIGAV++ D       F   + P  R   P+ ++L 
Sbjct: 41  VVVDLETTGGRSTSTGETAPDAITEIGAVKVRDGVVLGE-FATLVDPQ-RSIPPQIMRLT 98

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           GIT   + D P+  ++   F +F   ++ A  +AHNA FDVGF+ A  Q+ +     P R
Sbjct: 99  GITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRP-R 157

Query: 123 IIDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-- 175
           ++ T+ +ARR     + PS R  L SL + + +T   +  H AL D+    DV   ++  
Sbjct: 158 VLCTVRLARRVLSREEAPSVR--LASLARLFAVTT--QPTHRALDDARATVDVLHALIER 213

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           VG    N G  T     + + +  +P+++  +R K    R+  E L
Sbjct: 214 VG----NQGVHT-----YADLRGYLPDVTPAQRRK----RVLAEGL 246


>gi|257469515|ref|ZP_05633607.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|317063759|ref|ZP_07928244.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|313689435|gb|EFS26270.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
          Length = 1446

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 10/165 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           +VFD+ET GL+S    IIEIGAV+L       R  Q+    N +K  P+ ++ L  I+ +
Sbjct: 421 VVFDLETMGLNSHEHEIIEIGAVKLQGTRIVERYSQLV---NPKKPIPKKIQELTNISQD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P+   +  +F +F    ++  +AHNA FD+GFI  ++++       P+ +IDTL 
Sbjct: 478 MVDNMPTIEEVLPKFMEFVG--DSTMVAHNAPFDMGFIRRDVKKFMGYDYKPA-VIDTLQ 534

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +AR  +P  +   L +L K  G+++ +   H A+ DS   ++++I
Sbjct: 535 MARDLYPELKAYGLKNLNKVLGLSLDNH--HRAVDDSQATANMFI 577


>gi|229552421|ref|ZP_04441146.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314158|gb|EEN80131.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 1437

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 84/152 (55%), Gaps = 6/152 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P G   S   + L  ITD+ 
Sbjct: 415 VVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDP-GFPLSELTINLTHITDDM 472

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    S   +F  F  F +   A  + HN  FDVGF++   +R     +D + +IDTL +
Sbjct: 473 VHGSKSEEEVFRLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLEL 529

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160
           +R  HP  +N  L++L K+Y +++ H  +  A
Sbjct: 530 SRMLHPERKNHKLDTLAKQYKVSLEHHHRANA 561


>gi|315108203|gb|EFT80179.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA2]
          Length = 584

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G    P +++ L GIT  
Sbjct: 20  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ ++DTL+
Sbjct: 76  MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 132

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T +    H AL D+    DV   ++  VG    N 
Sbjct: 133 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 186

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 187 GVTTFED 193


>gi|194291379|ref|YP_002007286.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular
           protein) [Cupriavidus taiwanensis LMG 19424]
 gi|193225283|emb|CAQ71225.1| DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (modular
           protein) [Cupriavidus taiwanensis LMG 19424]
          Length = 532

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 11/169 (6%)

Query: 8   RKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IVF D+ETTG D++ DRI EIG VE+         ++  L P G    P   ++ GI+
Sbjct: 31  RPIVFVDLETTGADAQRDRITEIGVVEVGPDGIVE--WETLLDP-GMSIPPFIQRMTGIS 87

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ ++ +P+F S+     +    Q   ++AHNA+FD GF+    +R        + ++ T
Sbjct: 88  DDMVRGQPTFESLAESLAERL--QGRLFVAHNARFDYGFLKNAFRRAGVT--FRADVLCT 143

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + ++R   PS  R+ L++L  R+G+T   + +H AL D+ LL   + K+
Sbjct: 144 VRLSRSLFPSVERHGLDALIARFGLT--PKGRHRALADAELLWQFWQKI 190


>gi|261251946|ref|ZP_05944520.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
 gi|260938819|gb|EEX94807.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
          Length = 204

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 91/173 (52%), Gaps = 19/173 (10%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL  +  DR IEIGAV+L+D  +   TFQ  + P G + S       GIT+ 
Sbjct: 8   IVLDFETTGLSPNMGDRAIEIGAVKLID-GQVVDTFQQLMNP-GFRVSSFIEGYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   PS + + S+F DF    N   +AHNA FD  F++AE +RIN++         +L 
Sbjct: 66  MLAGAPSCAEVMSDFNDFIGNDN--LVAHNASFDKRFLDAEFERINRNY--RGEFACSLL 121

Query: 129 IARR---KHPSSRNDLNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKMM 175
           ++RR   + PS +  L  L +   I    + HR    AL DS + + +++ M+
Sbjct: 122 VSRRLNQEAPSHK--LGDLVRYMNIDNDGVFHR----ALADSQMTAKLWLLML 168


>gi|85057593|ref|YP_456509.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789698|gb|ABC65430.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 1572

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D+IIEI  +++ + +K    FQ F+ P  +K +     +  ITDE 
Sbjct: 482 VVFDLETTGLSNVRDKIIEIAGIKIKNGNKIGE-FQKFIDPQ-QKLTKTITNITNITDEM 539

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+ + +   +  +F  F   ++   +AHNA FDV F+  + + + K  L+P  IIDT+++
Sbjct: 540 LQGQQTIDQVLPQFLAF--AKDCVLVAHNASFDVDFLKEKAKEL-KISLEPKPIIDTMAL 596

Query: 130 ARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R   +      L  L   + + +     H AL D+   S+++IKM+
Sbjct: 597 SQRYFSNLLKYFSLKRLATVFKVKL--EDHHRALADATATSEIFIKMI 642


>gi|313827785|gb|EFS65499.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA2]
          Length = 590

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG  S+  +I EIGAV++    +    FQ  +CP G    P +++ L GIT  
Sbjct: 26  CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 81

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ ++DTL+
Sbjct: 82  MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 138

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T +    H AL D+    DV   ++  VG    N 
Sbjct: 139 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 192

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 193 GVTTFED 199


>gi|323493701|ref|ZP_08098821.1| DNA polymerase III, alpha subunit [Vibrio brasiliensis LMG 20546]
 gi|323312041|gb|EGA65185.1| DNA polymerase III, alpha subunit [Vibrio brasiliensis LMG 20546]
          Length = 204

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 88/168 (52%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL  +  DR IEIGAV+L++    + TFQ  + P G + S       GIT+ 
Sbjct: 8   IVLDFETTGLSPNMGDRAIEIGAVKLINGEVVD-TFQQLMNP-GFRVSSFIEGYTGITNA 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L + PS   + S+F  F  + N   +AHNA FD  F++AE  RINKD L       +L 
Sbjct: 66  MLANAPSCEEVMSQFHSFIADDN--LVAHNASFDKRFLDAEFDRINKDYL--GDFACSLL 121

Query: 129 IARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++RR    +  + L  L  RY    +    H AL DS + + +++ M+
Sbjct: 122 VSRRLNQDAPSHKLGDLV-RYKQIDNDGVFHRALADSQMTAKLWLLML 168


>gi|310287853|ref|YP_003939111.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum S17]
 gi|309251789|gb|ADO53537.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum S17]
          Length = 180

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 9/157 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG+    D IIE GAV+++D    + T+Q  + P  R  +P   +L GIT + 
Sbjct: 12  VVLDLETTGVSWYRDTIIEFGAVKVVDRKPVD-TYQQLVNP-MRNLNPFITQLTGITPDM 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L+  P+  ++  +F  +  +     I HN  +FD+ FI+   QRI    + P+RIIDTL 
Sbjct: 70  LEPAPTLDTVLPDFLRWCGDDAM--IGHNIMRFDIKFIDLAAQRILHHAV-PNRIIDTLQ 126

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           ++R  +P  +R+ L  L +R+   I+   +H AL D+
Sbjct: 127 MSRSMYPQYNRHRLVDLIQRFD--IADVEEHRALSDA 161


>gi|76363558|sp|P0C0B7|DPO3_STRPY RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|9789541|gb|AAF98345.1| DNA polymerase III alpha chain [Streptococcus pyogenes]
          Length = 1465

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 6/143 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD+ L+ 
Sbjct: 431 DVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKHLQG 488

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                ++   F DF   +++  +AHNA FDVGF+NA  +R +  P     +IDTL  AR 
Sbjct: 489 AKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEFARN 545

Query: 133 KHPS-SRNDLNSLCKRYGITISH 154
            +P   R+ L  L KR+ +++ H
Sbjct: 546 LYPEYKRHGLGPLTKRFQVSLDH 568


>gi|114321202|ref|YP_742885.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227596|gb|ABI57395.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 714

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKN-DRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD E TGL+ +  D II I  V +++    T  TF   + P GR   P +++ HGITD
Sbjct: 510 VVFDCEMTGLNPEGGDEIISIAGVRVVNGRVLTGETFDRIINP-GRPIPPGSVRFHGITD 568

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++DKP    +  +F  F    +A  +AHNA FD+ FI+ + +R      D   +   L
Sbjct: 569 DDVQDKPPIEVVLPQFKSFVG--DAVLVAHNAAFDMKFISMK-EREAGVRFDNPVLDTLL 625

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             A        + L++LC RYGI I+ R  H AL D+   +++ ++++
Sbjct: 626 LSALLDGDEEDHSLDALCDRYGIAITGR--HTALGDTLATAELLVRII 671


>gi|224283886|ref|ZP_03647208.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum NCIMB
           41171]
 gi|311064734|ref|YP_003971459.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum PRL2010]
 gi|313141038|ref|ZP_07803231.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB
           41171]
 gi|310867053|gb|ADP36422.1| DnaQ DNA polymerase III alpha subunit [Bifidobacterium bifidum
           PRL2010]
 gi|313133548|gb|EFR51165.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB
           41171]
          Length = 180

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 9/157 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG+    D IIE GAV+++D    + T+Q  + P  R  +P   +L GIT + 
Sbjct: 12  VVLDLETTGVSWYRDTIIEFGAVKVVDRKPVD-TYQQLVNP-MRNLNPFITQLTGITPDM 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L+  P+  ++  +F  +  +     I HN  +FD+ FI+   QRI    + P+RIIDTL 
Sbjct: 70  LEPAPTLDTVLPDFLRWCGDDAM--IGHNIMQFDIKFIDLAAQRILHHAV-PNRIIDTLQ 126

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           ++R  +P  +R+ L  L +R+   I+   +H AL D+
Sbjct: 127 MSRSMYPQYNRHRLVDLIQRFD--IADVEEHRALSDA 161


>gi|327462769|gb|EGF09091.1| DNA polymerase III PolC [Streptococcus sanguinis SK1057]
          Length = 1462

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GYPLSAFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++      +  EF +F   Q++  +AHNA FDVGF+N   +R +  P     +IDTL
Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|83310642|ref|YP_420906.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
 gi|82945483|dbj|BAE50347.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
          Length = 412

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 91/167 (54%), Gaps = 10/167 (5%)

Query: 10  IVFDIETTGL-DSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD ETTGL  S+ D+I+ I  V +++    +  +F   + P GR    E+++ HGITD
Sbjct: 220 VVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNP-GRPIPAESIRYHGITD 278

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + DKP    +  +F  +    +A  +AHNA FD+ F+    + +      P  ++DT+
Sbjct: 279 DMVVDKPPAGVVLPQFRSYV--ADAVLVAHNAAFDLKFLRMREKDMGIRFDIP--VLDTM 334

Query: 128 SIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++     P + + L+ +C RYGI I+ R  H AL D+ + + V ++
Sbjct: 335 ILSNFLDGPDAGHSLDDICDRYGIEITDR--HTALGDAMVTAAVLLR 379


>gi|332143320|ref|YP_004429058.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327553342|gb|AEB00061.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 715

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 9/164 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R      +V DIETTG ++  +RI EIG V+L+   + +R FQ  L P  R+      +
Sbjct: 536 VRDPAQPYVVVDIETTGGNNSYNRITEIGMVKLVGGKEVDR-FQTLLNPQ-RRIPSSITR 593

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GI+D+ + D P F+ +      F   ++A ++AHN  FD GFI  E  R+ +    P 
Sbjct: 594 LTGISDDMVADAPLFAEVADHIASF--TEDAVFVAHNVNFDYGFIKQEFARLEQSFRRPK 651

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
             + T+   RR HP  S   L +L K + I +     H AL D+
Sbjct: 652 --MCTVREMRRTHPGLSSYSLANLTKHFHIDMEQH--HRALSDA 691


>gi|125718854|ref|YP_001035987.1| DNA polymerase III PolC [Streptococcus sanguinis SK36]
 gi|166217455|sp|A3CQI2|DPO3_STRSV RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|125498771|gb|ABN45437.1| DNA polymerase III polC-type, putative [Streptococcus sanguinis
           SK36]
          Length = 1462

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++      +  EF +F   Q++  +AHNA FDVGF+N   +R +  P     +IDTL
Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKIIQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|260906794|ref|ZP_05915116.1| hypothetical protein BlinB_15797 [Brevibacterium linens BL2]
          Length = 581

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 19/188 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+ETTG  +    I EIGAV+     +    FQ  + P     SP   +L GIT   
Sbjct: 32  VIVDLETTGTTAGKSEITEIGAVKTRG-GEVLGEFQSLVKPEESVISPFVARLTGITHAM 90

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D PS  S+   F +F     A  +AHNA FD+GFI +  ++++     P+ ++DT+++
Sbjct: 91  VDDAPSIRSVLPSFLEFC--VGAVLVAHNAPFDIGFIRSACEKLDYHWPQPT-VLDTVTL 147

Query: 130 ARRKHPSSRND-----LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQIN 182
           +RR    SR++     L++L   +G  +S    H AL D+    +V  +++   GG    
Sbjct: 148 SRRV--VSRDEVRNHKLSTLAAHFGTEVS--PDHRALSDAKATGEVLHRVLERFGG---- 199

Query: 183 FGFKTNED 190
           +G  T E+
Sbjct: 200 YGITTLEE 207


>gi|153815178|ref|ZP_01967846.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756]
 gi|145847437|gb|EDK24355.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756]
          Length = 279

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 82/163 (50%), Gaps = 9/163 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD+ETTGLD  N+ IIEIGA+++ D  K +  F  F+ P     SP    L GI+++ 
Sbjct: 40  IAFDLETTGLDPMNNEIIEIGALKVRD-GKVSERFMEFIKPQ-ELISPAITGLTGISNDM 97

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +       S+ ++F DF  E     I HN  FD  F      R    P +    IDTL I
Sbjct: 98  VASARPARSVITDFIDFCEEDI--LIGHNIIFDYSFTKCTAAR-EGLPFE-KMGIDTLKI 153

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           A++ HP      L++LC+ Y   I +++ H A  D+   + +Y
Sbjct: 154 AKKVHPELESKSLSALCEHY--KIENKAAHRAYFDALATAKLY 194


>gi|315497459|ref|YP_004086263.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB
           48]
 gi|315415471|gb|ADU12112.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB
           48]
          Length = 717

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 13/162 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG  S N+R+ EIGAV++ +  +   T+Q  + P  R+  P   +L GI++  +
Sbjct: 547 VVDIETTGGQSANERVTEIGAVKIRN-GEIIDTWQSLINPE-RRIPPFITELTGISNAMV 604

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D P F+ I  +F  F   +   ++AHN  FD GF++AE +R+ +    P R     ++A
Sbjct: 605 RDAPRFADIADDFDAFL--KGTVFVAHNVNFDYGFLSAEYRRLER----PFRYPKMCTVA 658

Query: 131 --RRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHLL 167
             RR  P  +   L  L + +GI +   HR+   A+  + LL
Sbjct: 659 SMRRHFPGLAAYGLGPLSREFGIELKNHHRALSDAMAAAELL 700


>gi|331084769|ref|ZP_08333857.1| hypothetical protein HMPREF0987_00160 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410863|gb|EGG90285.1| hypothetical protein HMPREF0987_00160 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 238

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 83/161 (51%), Gaps = 11/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL  + D IIEIGAV++ D   T+R F  FL P   + SP   ++ GIT+E 
Sbjct: 6   VAFDLETTGLSEERDSIIEIGAVKVTDGKVTDR-FMEFLKP-AEEISPMITQITGITNEM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    +  ++  +F  F  E+    + HN  FD  F+     +         R IDTL I
Sbjct: 64  VAHARNTKAVIDDFMGFCGEEV--LLGHNILFDYKFMKRYACKYQHS--FERRGIDTLKI 119

Query: 130 ARRKHP--SSRNDLNSLCKRYGIT--ISHRSKHGALLDSHL 166
           AR+ H    SR+ L +LC  Y I    +HR+ H AL  + L
Sbjct: 120 ARKVHKDLESRS-LEALCAHYQIKNDAAHRAYHDALATAKL 159


>gi|224826734|ref|ZP_03699834.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224600954|gb|EEG07137.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 707

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 97/175 (55%), Gaps = 12/175 (6%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPE-ALK 61
           +++   VFD ETTGL+ +  D II+IGA  +++     +  F+  + P  R+  PE ++K
Sbjct: 513 SELSYTVFDTETTGLEPAAGDEIIQIGATRIVNRRLLQHEGFEQLIDP--RRPLPEDSVK 570

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT E L  +P   ++   F  +    +   +AHNA FD+ F+  +L+  +       
Sbjct: 571 IHGITPEMLAGQPPLDTVLPAFRAYCA--DTVLVAHNAAFDMRFL--QLKEASTGVRFDQ 626

Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DTL ++   HP+  +  L ++ +R G+TI  R  H A+ D+ +  +V++KM+
Sbjct: 627 PVLDTLLLSAVLHPNQESHRLEAIAERLGVTIIGR--HTAMGDAIVTGEVFLKMI 679


>gi|281355248|ref|ZP_06241742.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
           BAA-548]
 gi|281318128|gb|EFB02148.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
           BAA-548]
          Length = 185

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 5/125 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           +FD+ETTG+    DRI+E+ AV  +D   +   FQ  + P G +   +A+ +H ITD+ +
Sbjct: 11  IFDVETTGMSPVRDRIVELAAVR-VDRDGSLSRFQSLVNP-GVRIPAQAVAVHHITDDMV 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              PSF+ +  +F +F +E     +AHNA+FD+GF+   L R    PL   + +D+L + 
Sbjct: 69  AGAPSFARMGLDFLEFASESTL--VAHNARFDLGFLQESLARTGL-PLWKGKTLDSLRLL 125

Query: 131 RRKHP 135
           +   P
Sbjct: 126 KTTFP 130


>gi|121998681|ref|YP_001003468.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1]
 gi|121590086|gb|ABM62666.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1]
          Length = 707

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 10/169 (5%)

Query: 10  IVFDIETTGL-DSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           ++FD ETTGL  S+ D II I  V +++        F+  + P GR     ++K HGI D
Sbjct: 515 VIFDTETTGLAPSEGDEIISIAGVRMVNGRILEGECFEQLVNP-GRPIPKASIKFHGIRD 573

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + DKP  +++  +F  F    ++  +AHNA FD+ FI  +  +      +P  ++DTL
Sbjct: 574 EMVADKPGIATVLPQFSAFVG--DSVLVAHNAAFDMKFIRLKEGQCGLKFENP--VLDTL 629

Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++   H  +  + L ++  R G+ IS R  H AL D+ +  +++ +M+
Sbjct: 630 LLSVFLHDHTPEHTLEAIANRLGVEISGR--HTALGDTLVTGEIFAQML 676


>gi|294677643|ref|YP_003578258.1| PAS domain/exonuclease domain-containing protein [Rhodobacter
           capsulatus SB 1003]
 gi|6014992|sp|O68045|DPO3E_RHOCA RecName: Full=DNA polymerase III subunit epsilon-like protein
 gi|3128279|gb|AAC16131.1| DNA polymerase III alpha chain [Rhodobacter capsulatus SB 1003]
 gi|294476463|gb|ADE85851.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB
           1003]
          Length = 704

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 8/174 (4%)

Query: 5   NKMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
           +K+  +VFD ETTGL  +  D I++I AV +++  +     F   + P GR     +  +
Sbjct: 506 DKLTFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNP-GRPIPAASTAV 564

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGIT+  +   P+ + +   F  F   + A  +AHNA FD+ F+  +   I K+  +P  
Sbjct: 565 HGITEAMVATAPAIAEVGRRFHKF--AEGAVLVAHNAPFDLEFLRRKELLIGKNFDNP-- 620

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++DT+ ++     ++  + L++L  R GITI   ++H AL D+   ++ +++++
Sbjct: 621 VLDTVLLSAVVFGAAEGHSLDALTHRLGITIPEEARHTALGDTVATAEAFLRLL 674


>gi|225026305|ref|ZP_03715497.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353]
 gi|224956369|gb|EEG37578.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353]
          Length = 1484

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 88/169 (52%), Gaps = 13/169 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG    +D IIEIGAV+ +   K +  + VF+ P  R       +L  I D  
Sbjct: 454 VVFDLETTGFSPIHDAIIEIGAVK-VSKGKISDHYSVFVNPQ-RPIPLRITELTSIDDSM 511

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127
           + D  S   I  EF  F   +    +AHNA+FDV FI  NA+ Q    D      ++DT+
Sbjct: 512 VADAKSIEEILPEFLSFC--EGCSLVAHNAEFDVSFIEENAKRQGFETD----FTVLDTV 565

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +AR      ++  LN++CKR  I   H   H A+ D+ + ++V+++ +
Sbjct: 566 QMARLLLTDLNKFKLNTVCKRLNIKQEHH--HRAVDDARVTAEVFLRFV 612


>gi|294678385|ref|YP_003579000.1| PAS domain/exonuclease domain-containing protein [Rhodobacter
           capsulatus SB 1003]
 gi|294477205|gb|ADE86593.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB
           1003]
          Length = 704

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 8/174 (4%)

Query: 5   NKMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
           +K+  +VFD ETTGL  +  D I++I AV +++  +     F   + P GR     +  +
Sbjct: 506 DKLTFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNP-GRPIPAASTAV 564

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGIT+  +   P+ + +   F  F   + A  +AHNA FD+ F+  +   I K+  +P  
Sbjct: 565 HGITEAMVATAPAIAEVGRRFHKF--AEGAVLVAHNAPFDLEFLRRKELLIGKNFDNP-- 620

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++DT+ ++     ++  + L++L  R GITI   ++H AL D+   ++ +++++
Sbjct: 621 VLDTVLLSAVVFGAAEGHSLDALTHRLGITIPEEARHTALGDTVATAEAFLRLL 674


>gi|317502363|ref|ZP_07960529.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089964|ref|ZP_08338855.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896236|gb|EFV18341.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403102|gb|EGG82665.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 245

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 82/163 (50%), Gaps = 9/163 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD+ETTGLD  N+ IIEIGA+++ D  K +  F  F+ P     SP    L GI+++ 
Sbjct: 6   IAFDLETTGLDPMNNEIIEIGALKVRD-GKVSERFMEFIKPQ-ELISPAITGLTGISNDM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +       S+ ++F DF  E     I HN  FD  F      R    P +    IDTL I
Sbjct: 64  VASARPARSVITDFIDFCEEDI--LIGHNIIFDYSFTKCTAAR-EGLPFE-KMGIDTLKI 119

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           A++ HP      L++LC+ Y   I +++ H A  D+   + +Y
Sbjct: 120 AKKVHPELESKSLSALCEHY--KIENKAAHRAYFDALATAKLY 160


>gi|225180860|ref|ZP_03734308.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT
           1]
 gi|225168341|gb|EEG77144.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT
           1]
          Length = 269

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 97/172 (56%), Gaps = 11/172 (6%)

Query: 8   RKIVFDIETTGL-DSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEAL-KLHG 64
           R I+FD ETTG    + D II I AV + +   K ++ F   + P+  ++ P+A+  L G
Sbjct: 77  RYIIFDTETTGFYPYQGDEIINIAAVVIENGEIKEDQIFDELVNPH--RSIPQAVCDLTG 134

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD+ + DK    S+ S+F DF    ++  +AHNA+FD+ F+N +L    +  +  + +I
Sbjct: 135 ITDDMVADKCGICSVLSDFLDFIG--DSVLVAHNAEFDLAFLNIKLNWYTQTEI-YNPVI 191

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT  + R  +P    +DL++L + +   +  R +H AL DS + +++++  +
Sbjct: 192 DTYKLGRALYPQLLSHDLDTLIRHH--RVKERPRHTALGDSLMTAEIFLDYL 241


>gi|332359968|gb|EGJ37782.1| DNA polymerase III PolC [Streptococcus sanguinis SK1056]
          Length = 866

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++      +  EF +F   Q++  +AHNA FDVGF+N   +R +  P     +IDTL
Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|260434020|ref|ZP_05787991.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417848|gb|EEX11107.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 470

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 7/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGL    D I++IGAV ++         F   + P G    P + ++H ++D 
Sbjct: 279 VVFDTETTGLLPHKDEIVQIGAVRVVKGRIVEGEQFDTLVNP-GIPIPPASTRVHKVSDR 337

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P   +   +F  F   ++A  +AHNA FD+ F+    +R+  +   P  I+DT+ 
Sbjct: 338 MVQDAPDIITAGRQFHHF--ARDAVIVAHNAPFDMAFLRRHAKRMEVEWDHP--ILDTVL 393

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++     +S  + L++LC R GI I    +H AL D+   ++  ++M+
Sbjct: 394 LSAVLFGASETHTLDALCDRLGIEIPETLRHTALGDAVATAEALVRML 441


>gi|257466340|ref|ZP_05630651.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917497|ref|ZP_07913737.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691372|gb|EFS28207.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 1450

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 8/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+ET G +S   +IIEIGAV++++    +R  Q  L   G+      + +  ITD  
Sbjct: 425 VVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDRFSQ--LVNPGQSIPQNIVDVTNITDSM 482

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++++P+   +  +F DF   + +  +AHNA FD+G++  + ++      +PS  IDTL +
Sbjct: 483 VQNEPNIEEVLPKFLDFI--EGSILVAHNADFDIGYLKQQCKQQGYSDFNPS-FIDTLQM 539

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           A+  +P  +   L  L K+ G+++ +   H A+ D     ++++
Sbjct: 540 AKDLYPELKQFGLGPLNKKLGLSLENH--HRAVDDCQATGNMFL 581


>gi|255523029|ref|ZP_05390001.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans
           P7]
 gi|255513144|gb|EET89412.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans
           P7]
          Length = 862

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+E+TG+D   D II+I A+++    +    F+ FL  N  K+   +  +HG +DEF
Sbjct: 498 IVFDVESTGVDVTEDEIIQIAAIKVNKNGQVTEKFERFLKNN--KSVKNSEHVHGFSDEF 555

Query: 70  LK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK +    +++  EF  F   +++  + HN ++D+  + +ELQR            DTL 
Sbjct: 556 LKKNGEDKNTVLKEFVKF--SEDSVIVGHNVQYDINILTSELQRAGLGEPKFKAFYDTLD 613

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           I RR HP+ RN  L +L   +     ++  H A+ D     D+ ++ +
Sbjct: 614 IYRRFHPNLRNHKLETLSHIF--ETENKPSHDAMDDIQATKDILVRAI 659


>gi|258539791|ref|YP_003174290.1| DNA polymerase III PolC [Lactobacillus rhamnosus Lc 705]
 gi|257151467|emb|CAR90439.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705]
          Length = 1444

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P G   S   + L  ITD+ 
Sbjct: 422 VVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDP-GFPLSELTINLTHITDDM 479

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    S   +F  F  F +   A  + HN  FDVGF++   +R     +D + +IDTL +
Sbjct: 480 VHGSKSEEEVFRLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLEL 536

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           +R  HP  +N  L++L K+Y +++ H   H A +D+
Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEHH--HRANVDA 570


>gi|262066554|ref|ZP_06026166.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
 gi|291379736|gb|EFE87254.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
          Length = 1449

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 8/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL+S  ++IIEIGAV++      +R  Q  L   G        ++  IT+E 
Sbjct: 423 VVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDRYSQ--LINPGISIPYHITEITSITNEQ 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P    +  +F +F    +A  +AHNA FD+GFI  +++      L+ S +IDTL +
Sbjct: 481 VANQPKIDEVIGKFVEFIG--DAVLVAHNAPFDMGFIKRDIKEYLNIDLESS-VIDTLQM 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           AR   P   +  L  L K  G+ +     H A+ DS   ++++I
Sbjct: 538 ARDLFPDFKKYGLGDLNKSLGLALEKH--HRAVDDSQATANMFI 579


>gi|257452473|ref|ZP_05617772.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|317059014|ref|ZP_07923499.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|313684690|gb|EFS21525.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
          Length = 1450

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 8/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+ET G +S   +IIEIGAV++++    +R  Q  L   G+      + +  ITD  
Sbjct: 425 VVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDRFSQ--LVNPGQSIPQNIVDVTNITDSM 482

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++++P+   +  +F DF   + +  +AHNA FD+G++  + ++      +PS  IDTL +
Sbjct: 483 VQNEPNIEEVLPKFLDFI--EGSILVAHNADFDIGYLKQQCKQQGYSDFNPS-FIDTLQM 539

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           A+  +P  +   L  L K+ G+++ +   H A+ D     ++++
Sbjct: 540 AKDLYPELKQFGLGPLNKKLGLSLENH--HRAVDDCQATGNMFL 581


>gi|291544892|emb|CBL18001.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp.
           18P13]
          Length = 1444

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 89/167 (53%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+FD+ETTGL ++ DR+ EIGA+++ +  +   +F  ++ P  R   PE   L GI +  
Sbjct: 429 IIFDVETTGLSAERDRLTEIGAIKVKNM-RVADSFHTYVNPE-RPIPPEITDLTGIHEGM 486

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P  S    EF+ F  E +   +AHNA+FD  FI+A   R  +        ID+L +
Sbjct: 487 VAEAPKASQALKEFFAFCGE-DPVLVAHNARFDTSFIDAAAGRAGQR--YAYAYIDSLVL 543

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +   P  +++ LN + K   + +     H A  D+ +L+ +Y++++
Sbjct: 544 CQAMLPDLAKHKLNVVAKH--LKLGKFDHHRADNDAMMLAKIYLELV 588


>gi|172059933|ref|YP_001807585.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6]
 gi|171992450|gb|ACB63369.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 375

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 94/166 (56%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  +   RI EIG VE+     +  T+   + P G+   P   +L GI+D+ 
Sbjct: 16  VFVDLETTGGSTAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQSIPPFIQQLTGISDDM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+S+    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ +
Sbjct: 73  VRDAPSFASLAPTLFERLDGKL--FVAHNASFDRGFLRAEFERAGI-AFNPD-VLCTVRL 128

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  +R+ L++L +R+G+  +  ++H AL D+ LL   + ++
Sbjct: 129 SRALFPREARHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172


>gi|29839853|ref|NP_828959.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC]
 gi|29834200|gb|AAP04837.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC]
          Length = 249

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 5/157 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E TGLD K DRIIE  A+    + K   + +  + P+ R  S E+ ++H I+D  
Sbjct: 10  VCLDCEMTGLDVKKDRIIEFAAMRF-TFDKVIDSMETLINPD-RVISAESQRIHRISDAM 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LKD+P  + +F +   F  E +   + H+  FD+  +  E +RI +  L    IIDTL +
Sbjct: 68  LKDQPRIAEVFPKIKSFLKEGDY-IVGHSVGFDLQVLTQEAERIGESFLSKYYIIDTLRL 126

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A+    S  N L +L   +   + +   H A+ D  +
Sbjct: 127 AKEYGDSPNNSLEALAVHF--NVPYDGNHRAMKDVEI 161


>gi|331265607|ref|YP_004325237.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
 gi|326682279|emb|CBY99896.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
          Length = 1463

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 6/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L GIT + 
Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITYDH 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P     +IDTL  
Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154
           AR  +P   R+ L  L KR+G+ + H
Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566


>gi|251796155|ref|YP_003010886.1| hypothetical protein Pjdr2_2143 [Paenibacillus sp. JDR-2]
 gi|247543781|gb|ACT00800.1| DNA polymerase III, epsilon subunit [Paenibacillus sp. JDR-2]
          Length = 244

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 15/173 (8%)

Query: 10  IVFDIETTGL-DSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +VFD+ETTG   S  D II  GAV +    LD S   R F   + P  R+   + ++L G
Sbjct: 61  VVFDLETTGFYPSNGDEIISFGAVHMKGLELDES---RQFYSLVNPK-RRIPRQIIELTG 116

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E ++D P    +  +F +F   +    IAH A  D  F+NA L R +K  L+  R++
Sbjct: 117 ITNEMVQDAPDLMQVLHDFMEFIGRRLL--IAHAAGHDKQFLNAALWRTSKVSLN-HRVL 173

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           DT+ +A+   P  +   L+ L +  GI I+ R  H AL DS + + ++ + +V
Sbjct: 174 DTMLVAKWLEPKRASYALDDLLEDCGIPITER--HHALQDSLMTAKLWQQFLV 224


>gi|254821932|ref|ZP_05226933.1| hypothetical protein MintA_18512 [Mycobacterium intracellulare ATCC
           13950]
          Length = 323

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 30/215 (13%)

Query: 10  IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ETTG  +K+      D I EIGAV++         F   + P  R   P+ ++L 
Sbjct: 18  VVVDLETTGGRTKSAAGTEPDAITEIGAVKVRGGVVLGE-FATLIDPQ-RSIPPQVVRLT 75

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           GIT   + D P+  ++   F +F   +Q A  +AHNA FD+GF+ A  QR +     P +
Sbjct: 76  GITTAMVSDAPTIDAVLPMFLEFARLDQGAVLVAHNAGFDIGFLRAAAQRCDIAWPRP-Q 134

Query: 123 IIDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-- 175
           ++ T+ +ARR     + PS R  L SL + + +T   +  H AL D+    DV   ++  
Sbjct: 135 VLCTVRLARRVLSREEAPSVR--LASLARLFAVTT--QPTHRALDDARATVDVLHALIER 190

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
           VG    N G  T     + + +  +P+++  +R K
Sbjct: 191 VG----NQGVHT-----YADLRSYLPDVAPAQRRK 216


>gi|160880751|ref|YP_001559719.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans
           ISDg]
 gi|160429417|gb|ABX42980.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans
           ISDg]
          Length = 1527

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTG  S  D+IIEIGAV++   +  +R F  F+ P      P  + KL  ITDE
Sbjct: 498 VVFDIETTGFSSVKDKIIEIGAVKIQHGTIVDR-FSTFINP--EVPIPYHIQKLTSITDE 554

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    +   I  EF  F   +    +AHNA FD+GFI  + + +N  PL  +  +DT+ 
Sbjct: 555 MVIGSRTIEEILPEFLSFC--EGCYLVAHNASFDIGFITKKAEFLNI-PLTVTS-VDTVG 610

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR       N  L+++ K   ++IS  + H A+ D+   +++Y+K +
Sbjct: 611 LARVLLNHLNNFKLDTVAK--ALSISLENHHRAVDDAGCTAEIYLKFL 656


>gi|307717390|gb|ADN88748.1| DNA polymerase III [Listeria welshimeri]
          Length = 231

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 20/159 (12%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                 +   F         EW      +AHNA FD+GFIN   +++  +  D + ++DT
Sbjct: 59  SDPIDVVLKRF--------KEWSGDDILVAHNASFDMGFINTAYEKVGLEKAD-NAVVDT 109

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           L +AR  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 110 LELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146


>gi|307717338|gb|ADN88722.1| DNA polymerase III [Listeria welshimeri]
 gi|307717340|gb|ADN88723.1| DNA polymerase III [Listeria welshimeri]
 gi|307717362|gb|ADN88734.1| DNA polymerase III [Listeria welshimeri]
 gi|307717368|gb|ADN88737.1| DNA polymerase III [Listeria welshimeri]
 gi|307717392|gb|ADN88749.1| DNA polymerase III [Listeria welshimeri]
          Length = 231

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 20/159 (12%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                 +   F         EW      +AHNA FD+GFIN   +++  +  D + ++DT
Sbjct: 59  SDPIDVVLKRF--------KEWSGDDILVAHNASFDMGFINTAYEKVGLEKAD-NAVVDT 109

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           L +AR  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 110 LELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146


>gi|259503120|ref|ZP_05746022.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041]
 gi|259168986|gb|EEW53481.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041]
          Length = 1444

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL +  D++IE+ AV++ +     R F  F+ P G   S +   L  ITDE 
Sbjct: 424 VIFDVETTGLSAIYDKVIELSAVKMKNGEVLAR-FDEFIDP-GFPLSEQTTNLTSITDEM 481

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   S   +F  F DF          HN  FD+GF+N   +R   + +    +IDTL +
Sbjct: 482 VRGSKSEEEVFKMFKDFC--AGTIIAGHNVSFDMGFMNTGYRRHQMEEIT-EPVIDTLPL 538

Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167
           AR  +P+ R   LN+L K++ + +   HR+   A    HLL
Sbjct: 539 ARFLYPNMRGYRLNTLSKKFKVALEHHHRANFDAEATGHLL 579


>gi|307298437|ref|ZP_07578240.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915602|gb|EFN45986.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 1412

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGL+ K D IIEIGA++ +  ++   TF  F+ P  ++ S     L GIT++ 
Sbjct: 403 IVFDLETTGLNPKEDEIIEIGAIK-MKGNEILETFSSFVKPQ-KELSSLITSLTGITEDM 460

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTLS 128
           L    +   +  EF  F   +    +AHNA FD GFI N+  +    D   P   IDTL+
Sbjct: 461 LSGAGTIKQVLPEFTKF--AEGGILVAHNASFDYGFIRNSVKKYFGGDWEMPC--IDTLA 516

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+  + +    L+++ KR  + + H   H A  D+ + ++V  K +
Sbjct: 517 LAKSLYRAKSYSLDNVVKR--LKLGHFDHHRAYEDAKVTAEVLKKFL 561


>gi|258545959|ref|ZP_05706193.1| ribonuclease T [Cardiobacterium hominis ATCC 15826]
 gi|258518837|gb|EEV87696.1| ribonuclease T [Cardiobacterium hominis ATCC 15826]
          Length = 212

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 99/200 (49%), Gaps = 22/200 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G D+K D ++E+ AV L+++ +  R     T    + P  G    PEALK+ 
Sbjct: 16  VVIDVETGGFDAKKDALLELAAV-LVNFDENQRLCRTHTIHYHIHPFPGANIDPEALKIT 74

Query: 64  GITDEFLKDKPSFSS------IFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN 114
           GI D +   +P++         F E   +  +Q       + HNA FD+GFINA  +R +
Sbjct: 75  GI-DPYHPLRPAYHEDKAAERFFDEIRAYQKQQECTRSILVGHNATFDLGFINALAERTD 133

Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             ++P  P  ++DT+S+    +   +  L  + ++ G        HGA  D+ L +D++ 
Sbjct: 134 YKRNPFHPFSVLDTVSLGALAY--GQTVLARIARQGGFEYDSSKAHGAKYDAELTADIFC 191

Query: 173 KMM-VGGSQINFGFKTNEDR 191
            ++     ++ + +  +E++
Sbjct: 192 HIVNTWAEKVGYSWPASEEQ 211


>gi|227432323|ref|ZP_03914316.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351929|gb|EEJ42162.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 1437

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 8/160 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL +  DRIIE+ AV+ +        F  ++ P G   S    KL  ITD  
Sbjct: 420 VAFDLETTGLSAVTDRIIELSAVK-MQLGNVIEKFSEYINP-GFLLSEFTTKLTSITDAM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + +  +  +I   F ++    NA  + HN  FDVGF+NA   R N+ P+  + IIDTL  
Sbjct: 478 VANSDTEENIIKRFREW--SGNAVLVGHNVTFDVGFMNAAYTRYNQ-PIITNAIIDTLPF 534

Query: 130 ARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHL 166
            R  +P  ++  L ++ KR+ I +  +HR+   A    H+
Sbjct: 535 TRWLYPDYKSYRLGTIAKRFNINLEQAHRAIFDAETTGHI 574


>gi|269123116|ref|YP_003305693.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
           12112]
 gi|268314442|gb|ACZ00816.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
           12112]
          Length = 1465

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 94/167 (56%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG    ND+IIEIGAV+L +    +R F  F+ P       + ++L GI D  
Sbjct: 405 VVFDIETTGFSPINDKIIEIGAVKLKNGKVLDR-FSEFVNPQTII-PKKIVELTGINDNM 462

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD      +   F +F   +    +AHNAKFDVGFI+ + + +N +  D S  IDTL  
Sbjct: 463 VKDSDIIDKVMPRFLEFV--KGTTLVAHNAKFDVGFISKKCEDLNLET-DFSY-IDTLEW 518

Query: 130 AR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++       R +L++L KR+ I + +   H A+ D++  ++++ K++
Sbjct: 519 SKILVDDVKRFNLDTLTKRFNIKLENH--HRAVDDANATAELFKKLL 563


>gi|302875356|ref|YP_003843989.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
 gi|307688937|ref|ZP_07631383.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
 gi|302578213|gb|ADL52225.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
          Length = 867

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 77/137 (56%), Gaps = 6/137 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+E+TG D   D II+I A+ +    +   +F+ FL P  +K+   +  +HG +DEF
Sbjct: 502 IVFDVESTGTDVTEDEIIQIAAIRINRNGEVIDSFERFLKP--KKSVKNSEHIHGFSDEF 559

Query: 70  LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK+K     ++  EF  F   +NA  + HN ++D+  +++E+ R+N          DTL 
Sbjct: 560 LKEKGEDKETVIKEFLRF--SENAVIVGHNVQYDINILSSEIHRLNLGKSKFLAFYDTLD 617

Query: 129 IARRKHPSSRN-DLNSL 144
           I RR +P+  N  LN+L
Sbjct: 618 IYRRFYPNLVNHKLNTL 634


>gi|294783112|ref|ZP_06748436.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 1_1_41FAA]
 gi|294479990|gb|EFG27767.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 1_1_41FAA]
          Length = 1449

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 8/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL+S  ++IIEIGAV++      +R  Q  L   G        ++  IT+E 
Sbjct: 423 VVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDRYSQ--LINPGISIPYHITEITSITNEQ 480

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P    +  +F +F    +A  +AHNA FD+GFI  +++      L+ S +IDTL +
Sbjct: 481 VANQPKIDEVIGKFVEFIG--DAVLVAHNAPFDMGFIKRDIKEYLNIDLECS-VIDTLQM 537

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           AR   P   +  L  L K  G+ +     H A+ DS   ++++I
Sbjct: 538 ARDLFPDFKKYGLGDLNKALGLALEKH--HRAVDDSQATANMFI 579


>gi|90408002|ref|ZP_01216174.1| putative DNA polymerase III [Psychromonas sp. CNPT3]
 gi|90310846|gb|EAS38959.1| putative DNA polymerase III [Psychromonas sp. CNPT3]
          Length = 210

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 10/179 (5%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  ++ DR IEIGAV +++   T++ FQ  + P  R NS       GIT+ 
Sbjct: 10  VVLDFETTGLSPNQGDRAIEIGAVRIVNGEVTDQ-FQALMNPGIRVNSFIE-DYTGITNH 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK+  S S + ++F DF  + N   +AHNA FD  F++ EL  I++          +L 
Sbjct: 68  MLKEAASCSDVMAQFCDFIGDDN--LLAHNASFDKKFLDNELDEISRTY--QGEFTCSLL 123

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           ++RR +  S++  L +L K+  ++      H AL D+ + + +++ M+   SQ  +G K
Sbjct: 124 VSRRINIDSQSHSLGNLVKQLNLS-EEGGFHRALFDAQMTAKLWLHMLDNISQ-TYGIK 180


>gi|116513078|ref|YP_811985.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris SK11]
 gi|116108732|gb|ABJ73872.1| DNA polymerase III catalytic subunit, PolC type [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 1635

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + ++ +I+I A ++   +  +  F  F+ P G + S    +L GITD+ 
Sbjct: 594 VVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDDH 651

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      + ++F  F   +    +AHNA FDVGF+N    R N  P+    ++DTL  
Sbjct: 652 VKNAKPLYEVLTKFQKFC--EGTILVAHNASFDVGFMNMNYSR-NGLPIISQPVVDTLEF 708

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           AR  +P   R  L  L K++ I + H   H A  D+
Sbjct: 709 ARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDA 742


>gi|125625168|ref|YP_001033651.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493976|emb|CAL98973.1| DNA polymerase III alpha subunit [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071977|gb|ADJ61377.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 1635

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + ++ +I+I A ++   +  +  F  F+ P G + S    +L GITD+ 
Sbjct: 594 VVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDDH 651

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      + ++F  F   +    +AHNA FDVGF+N    R N  P+    ++DTL  
Sbjct: 652 VKNAKPLYEVLTKFQKFC--EGTILVAHNASFDVGFMNMNYSR-NGLPIISQPVVDTLEF 708

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           AR  +P   R  L  L K++ I + H   H A  D+
Sbjct: 709 ARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDA 742


>gi|15674106|ref|NP_268281.1| DNA polymerase III PolC [Lactococcus lactis subsp. lactis Il1403]
 gi|12725180|gb|AAK06222.1|AE006440_8 DNA polymerase III, alpha chain [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 1658

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + ++ +I+I A ++   +  +  F  F+ P G + S    +L GITD+ 
Sbjct: 617 VVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDDH 674

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      + ++F  F   +    +AHNA FDVGF+N    R N  P+    ++DTL  
Sbjct: 675 VKNAKPLYEVLTKFQKFC--EGTILVAHNATFDVGFMNMNYSR-NGLPIITQPVVDTLEF 731

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           AR  +P   R  L  L K++ I + H   H A  D+
Sbjct: 732 ARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDA 765


>gi|307717322|gb|ADN88714.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717324|gb|ADN88715.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717408|gb|ADN88757.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717412|gb|ADN88759.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717418|gb|ADN88762.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
          Length = 231

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 12/155 (7%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                 +   F     E +A+   +AHNA FD+GFIN   +++   P   + ++DTL +A
Sbjct: 59  SDPIEVVLQRF----KEWSADDILVAHNASFDMGFINTAYEKVGI-PKAKNAVVDTLELA 113

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           R  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 114 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146


>gi|13959345|sp|Q9CDT7|DPO3_LACLA RecName: Full=DNA polymerase III polC-type; Short=PolIII
          Length = 1638

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + ++ +I+I A ++   +  +  F  F+ P G + S    +L GITD+ 
Sbjct: 597 VVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDDH 654

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      + ++F  F   +    +AHNA FDVGF+N    R N  P+    ++DTL  
Sbjct: 655 VKNAKPLYEVLTKFQKFC--EGTILVAHNATFDVGFMNMNYSR-NGLPIITQPVVDTLEF 711

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           AR  +P   R  L  L K++ I + H   H A  D+
Sbjct: 712 ARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDA 745


>gi|322390849|ref|ZP_08064359.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
 gi|321142519|gb|EFX37987.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
          Length = 1464

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 6/151 (3%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N+   +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L G
Sbjct: 422 NEATYVVFDVETTGLSAIYNDLIQVAASKMYK-GNVIEEFDEFIDP-GHPLSAFTTQLTG 479

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E ++       +  EF  F   +    +AHNA FDVGF+NA  +R +  P     +I
Sbjct: 480 ITNEHVRGAKPLVQVLKEFQAFC--EGTVLVAHNATFDVGFMNANYER-HGLPKITQPVI 536

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISH 154
           DTL  AR  +P   R+ L  L KR+G+ + H
Sbjct: 537 DTLEFARNLYPDFKRHGLGPLTKRFGVGLEH 567


>gi|312868001|ref|ZP_07728205.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parasanguinis F0405]
 gi|311096405|gb|EFQ54645.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parasanguinis F0405]
          Length = 1464

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 6/151 (3%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N+   +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L G
Sbjct: 422 NEATYVVFDVETTGLSAIYNDLIQVAASKMYK-GNVIEEFDEFIDP-GHPLSAFTTQLTG 479

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E ++       +  EF  F   +    +AHNA FDVGF+NA  +R +  P     +I
Sbjct: 480 ITNEHVRGAKPLVQVLKEFQAFC--EGTVLVAHNATFDVGFMNANYER-HGLPKITQPVI 536

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISH 154
           DTL  AR  +P   R+ L  L KR+G+ + H
Sbjct: 537 DTLEFARNLYPDFKRHGLGPLTKRFGVGLEH 567


>gi|296877258|ref|ZP_06901298.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
 gi|296431778|gb|EFH17585.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
          Length = 1464

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 6/151 (3%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N+   +VFD+ETTGL +  + +I++ A ++         F  F+ P G   S    +L G
Sbjct: 422 NEATYVVFDVETTGLSAIYNDLIQVAASKMYK-GNVIEEFDEFIDP-GHPLSAFTTQLTG 479

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E ++       +  EF  F   +    +AHNA FDVGF+NA  +R +  P     +I
Sbjct: 480 ITNEHVRGAKPLVQVLKEFQAFC--EGTVLVAHNATFDVGFMNANYER-HGLPKITQPVI 536

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISH 154
           DTL  AR  +P   R+ L  L KR+G+ + H
Sbjct: 537 DTLEFARNLYPDFKRHGLGPLTKRFGVGLEH 567


>gi|83311148|ref|YP_421412.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
 gi|82945989|dbj|BAE50853.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
          Length = 216

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 89/196 (45%), Gaps = 26/196 (13%)

Query: 8   RKIVFDIETTGLDSKNDR--------------IIEIGAVELL---DYSKTNRTFQVFLCP 50
           R I  D ETTG                     +IEIG VELL   D  KT  ++   + P
Sbjct: 13  RLIAIDAETTGFRVPTAAEIKKMPKGLRLPGVMIEIGCVELLRGEDGWKTGESWHRRIQP 72

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
            G   +  ++ +HGIT   LKD P F  +  EF  F  +     +AH+A+ ++ F+N E 
Sbjct: 73  GG-PIAKASIAVHGITPAELKDAPQFRDVLDEFETFIGQDML--LAHSAENEIEFLNFEY 129

Query: 111 QRINKDPLDPSRIID-----TLSIARRKHPSSRNDLNSLCKRYGITISHR-SKHGALLDS 164
            R+ +   D     D     T  ++R+  P     L+ LC R  I  S R   HGALLD+
Sbjct: 130 ARVGRCGFDDVIFSDNDFVCTQELSRQFFPGVPGSLDVLCDRLWIDRSDRFEHHGALLDA 189

Query: 165 HLLSDVYIKMMVGGSQ 180
            L ++ ++KM  G  Q
Sbjct: 190 ILTAEAFMKMAGGFVQ 205


>gi|307243879|ref|ZP_07526004.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678]
 gi|306492701|gb|EFM64729.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678]
          Length = 172

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 13/171 (7%)

Query: 10  IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITD 67
           +V D+ETTGL   N D IIEIG  E+    +  R +   + PNG    P  + ++  IT+
Sbjct: 9   VVVDLETTGLSPFNGDEIIEIGVTEIKG-DRIYRNYSRLVKPNGF--IPSVITEITNITN 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++D      +   F  F  ++    IAHNAKFD+GF+N  L+++N DP+D  + I T+
Sbjct: 66  DMVQDALPLEDVLPNFRKFIGDRTI--IAHNAKFDIGFLNYYLEKMNLDPID--KYICTM 121

Query: 128 SIAR--RKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKM 174
            + +  +++      L + C  YGI    +HR+    L  + L   + + M
Sbjct: 122 EMLKKNKEYKGKNKKLQTACDYYGILNENAHRADSDTLATAKLFMKIRLSM 172


>gi|197294585|ref|YP_001799126.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
 gi|171853912|emb|CAM11875.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
          Length = 1530

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG  S  D+IIEI  V+ + + K  + FQ  + P   K S   + +  ITD+ 
Sbjct: 451 VVFDLETTGFSSTKDKIIEIAGVK-IKHGKKIQEFQALINPQ-EKLSQTIINITNITDDM 508

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+ K +   +  +F +F   +N   +AHNA FD+ F+  +++ +      P  +IDT+++
Sbjct: 509 LEGKNTIDQVLPDFLNFI--ENCILVAHNATFDITFLKEKIKELGI-AYKPQPVIDTMTL 565

Query: 130 ARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R          L  L   + + +     H AL D++  + V+IKM+
Sbjct: 566 SQRFFSEFLKYFSLKRLATVFKVKMEEH--HRALSDANTTAQVFIKMI 611


>gi|281492785|ref|YP_003354765.1| DNA polymerase III subunit alpha [Lactococcus lactis subsp. lactis
           KF147]
 gi|281376437|gb|ADA65923.1| DNA polymerase III, alpha subunit [Lactococcus lactis subsp. lactis
           KF147]
          Length = 1638

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + ++ +I+I A ++   +  +  F  F+ P G + S    +L GITD+ 
Sbjct: 597 VVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDDH 654

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      + ++F  F   +    +AHNA FDVGF+N    R N  P+    ++DTL  
Sbjct: 655 VKNAKPLYEVLTKFQKFC--EGTILVAHNATFDVGFMNMNYSR-NGLPIITQPVVDTLEF 711

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           AR  +P   R  L  L K++ I + H   H A  D+
Sbjct: 712 ARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDA 745


>gi|148543926|ref|YP_001271296.1| DNA polymerase III PolC [Lactobacillus reuteri DSM 20016]
 gi|184153322|ref|YP_001841663.1| DNA polymerase III PolC [Lactobacillus reuteri JCM 1112]
 gi|227364835|ref|ZP_03848882.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3]
 gi|325682539|ref|ZP_08162056.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A]
 gi|166918295|sp|A5VJD5|DPO3_LACRD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|148530960|gb|ABQ82959.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           reuteri DSM 20016]
 gi|183224666|dbj|BAG25183.1| DNA polymerase III alpha subunit [Lactobacillus reuteri JCM 1112]
 gi|227070098|gb|EEI08474.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3]
 gi|324978378|gb|EGC15328.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A]
          Length = 1443

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL +  D++IE+ AV++ D +   R F  F+ P G   S +   L  IT E 
Sbjct: 427 VIFDVETTGLSAIYDKVIELSAVKMQDGNVLER-FDEFIDP-GFPLSEQTTNLTSITTEM 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   +   +F  F DF   +      HN  FD+GF+N   +R     +    +IDTL +
Sbjct: 485 VQGSKTEEEVFQMFKDFC--KGCIIAGHNVSFDMGFMNTGYERHQMGKI-AEPVIDTLPL 541

Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167
           AR  +P  R   LN+L K++ + +   HR+ + +    HLL
Sbjct: 542 ARFLYPDMRGYRLNTLSKKFKVALEHHHRANYDSEATGHLL 582


>gi|168334980|ref|ZP_02693097.1| DNA polymerase III, alpha subunit [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 1454

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 101/169 (59%), Gaps = 13/169 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           ++FD+ETTGL S +++IIEIGAV++ +  K   TF  F+ P    + PE + +L GIT  
Sbjct: 437 VIFDLETTGLSSSSNKIIEIGAVKIRN-GKIIDTFSSFVNP--ETDIPEHITELTGITTT 493

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTL 127
            + D P+ +++  +F +F    +A  +AHNA FD+GFI   L       ++ ++  IDT+
Sbjct: 494 DIADAPTIAAVLPQFVEFC--ASAILVAHNADFDMGFI---LHNTRDLAIEFNKTYIDTV 548

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           S+AR   P+  N  L+++  +  + +S ++ H A+ D+   +++++K +
Sbjct: 549 SMARILLPNLGNAKLSNIANK--LKVSLKNHHRAVDDASATAEIFLKFI 595


>gi|329942403|ref|ZP_08291213.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Chlamydophila psittaci Cal10]
 gi|332287044|ref|YP_004421945.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
 gi|313847640|emb|CBY16628.1| putative DNA polymerase III epsilon chain [Chlamydophila psittaci
           RD1]
 gi|325507354|gb|ADZ18992.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
 gi|328815313|gb|EGF85301.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Chlamydophila psittaci Cal10]
 gi|328914277|gb|AEB55110.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC]
          Length = 249

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 5/154 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E TGLD K DRIIE  A+    + +   + +  + P+ R  S E+ ++H I+D  
Sbjct: 10  VCLDCEMTGLDVKKDRIIEFAAIRF-TFDRVIDSMETLINPD-RVISAESQRIHHISDAM 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LKD+P  + +F +   F  E +   + H+  FD+  ++ E +RI +  L    +IDTL +
Sbjct: 68  LKDQPRIAEVFPKIKSFLKEGDY-IVGHSVGFDLQVLSQEAERIGESFLSKYYVIDTLRL 126

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           A+    S  N L +L   +   + +   H A+ D
Sbjct: 127 AKEYGDSPNNSLEALAVHF--NVPYDGNHRAMKD 158


>gi|307717410|gb|ADN88758.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
 gi|307717414|gb|ADN88760.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
 gi|307717416|gb|ADN88761.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
          Length = 231

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 12/155 (7%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                 +   F     E +A+   +AHNA FD+GFIN   +++   P   + ++DTL +A
Sbjct: 59  SDPIDVVLQRF----KEWSADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLELA 113

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           R  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 114 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146


>gi|171056929|ref|YP_001789278.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170774374|gb|ACB32513.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
          Length = 731

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 12/169 (7%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNR--TFQVFLCPNGRKNSPEALKLHGITD 67
           VFD ETTGL+ S  D II+IGA  +    K  R  +F+  + P  R   P  + +HGI  
Sbjct: 543 VFDTETTGLNPSDGDEIIQIGATRI-SGGKLRRQESFEQLVDPQ-RPIPPAGIPIHGIKP 600

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +P+   +   F  F   Q+   +AHNA FD+ F+  +  R       P  ++DTL
Sbjct: 601 DMVAGQPTIDHVLPAFHAF--AQDTVLVAHNAAFDMRFLQLKQDRTGLVFDQP--VLDTL 656

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++   HP+  +  L ++ +R+ IT+  R  H AL D+ + ++V+++++
Sbjct: 657 LLSAVVHPNQESHRLEAIAERFSITVVGR--HTALGDAMVTAEVFVRLI 703


>gi|116617801|ref|YP_818172.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096648|gb|ABJ61799.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 1437

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL +  DRIIE+ AV+ +        F  ++ P G   S    KL  ITD  
Sbjct: 420 VAFDLETTGLSAVTDRIIELSAVK-MQLGNVIEKFSEYINP-GFPLSEFTTKLTSITDAM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + +  +  +I   F ++    NA  + HN  FDVGF+NA   R N+ P+  + IIDTL  
Sbjct: 478 VANSDTEENIIKRFREW--SGNAVLVGHNVTFDVGFMNAAYTRYNQ-PIITNAIIDTLPF 534

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
            R  +P  ++  L ++ KR+ I +     H A+ D+
Sbjct: 535 TRWLYPDYKSYRLGTIAKRFNINLEQ--AHRAIFDA 568


>gi|194467743|ref|ZP_03073729.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
 gi|194452596|gb|EDX41494.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
          Length = 1443

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL +  D++IE+ AV++ D +   R F  F+ P G   S +   L  IT E 
Sbjct: 427 VIFDVETTGLSAIYDKVIELSAVKMQDGNVLER-FDEFIDP-GFPLSEQTTNLTSITTEM 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   +   +F  F DF   +      HN  FD+GF+N   +R     +    +IDTL +
Sbjct: 485 VQGSKTEEEVFQMFKDFC--KGCIIAGHNVAFDMGFMNTGYERHQMGKI-AEPVIDTLPL 541

Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167
           AR  +P  R   LN+L K++ + +   HR+ + +    HLL
Sbjct: 542 ARFLYPDMRGYRLNTLSKKFKVALEHHHRANYDSEATGHLL 582


>gi|227544953|ref|ZP_03975002.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300910016|ref|ZP_07127476.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112]
 gi|227185064|gb|EEI65135.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300892664|gb|EFK86024.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112]
          Length = 1443

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGL +  D++IE+ AV++ D +   R F  F+ P G   S +   L  IT E 
Sbjct: 427 VIFDVETTGLSAIYDKVIELSAVKMQDGNVLER-FDEFIDP-GFPLSEQTTNLTSITTEM 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   +   +F  F DF   +      HN  FD+GF+N   +R     +    +IDTL +
Sbjct: 485 VQGSKTEEEVFQMFKDFC--KGCIIAGHNVAFDMGFMNTGYERHQMGKI-AEPVIDTLPL 541

Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167
           AR  +P  R   LN+L K++ + +   HR+ + +    HLL
Sbjct: 542 ARFLYPDMRGYRLNTLSKKFKVALEHHHRANYDSEATGHLL 582


>gi|254463814|ref|ZP_05077225.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacterales bacterium Y4I]
 gi|206684722|gb|EDZ45204.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacterales bacterium Y4I]
          Length = 469

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 7/173 (4%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           + +  +VFD ETTGL    D I++IGA+ ++ +       F   + P G      + K+H
Sbjct: 273 SNLSYVVFDTETTGLLPHKDEIVQIGALRVVRNRIVAGEQFGTLVDP-GTPIPAASTKVH 331

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+D  ++  P        F  F    +A  +AHNA FD+ F+    +R       P  +
Sbjct: 332 GISDAMVQGAPDIGQAARAFHRF--ASDAVIVAHNAPFDMAFLRRHAKRAGVSWDQP--V 387

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DT+ ++     +S++  L++LC+R  +TI    +H A+ D+   ++V+ KM+
Sbjct: 388 LDTVLLSAVLFGASQSHTLDALCERLEVTIPPALRHTAMGDAQATAEVFCKML 440


>gi|314929290|gb|EFS93121.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL044PA1]
          Length = 597

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG   +  +I EIGAV++    +    FQ  +CP G    P +++ L GITD 
Sbjct: 33  CVVDLETTG-TGEGAQITEIGAVKVRG-GRVEGEFQTLVCPTG--PIPASVQVLTGITDA 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P  S++   + +F   ++   +AHNA+FD+GF+     + N    DP+ ++DTL+
Sbjct: 89  MVRPAPPLSAVLPSWSEF--SRSTVLVAHNARFDIGFLKRAYAQHNYPWGDPT-LVDTLA 145

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T    S H AL D+    DV   ++  VG    +F
Sbjct: 146 LARSVLSRGEVRNYKLSTLSQLFRTTTM--SSHRALADARATVDVLHGLIERVG----SF 199

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 200 GVTTLED 206


>gi|307717400|gb|ADN88753.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 12/155 (7%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                 +   F     E +A+   +AHNA FD+GFIN   +++   P   + ++DTL +A
Sbjct: 59  SDPIDVVLKRF----KEWSADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLELA 113

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           R  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 114 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146


>gi|313837498|gb|EFS75212.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA2]
 gi|314971705|gb|EFT15803.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA3]
 gi|328906955|gb|EGG26721.1| GIY-YIG catalytic domain protein [Propionibacterium sp. P08]
          Length = 598

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
            V D+ETTG   +  +I EIGAV++    +    FQ  +CP G    P +++ L GITD 
Sbjct: 34  CVVDLETTG-TGEGAQITEIGAVKVRG-GRVEGEFQTLVCPTG--PIPASVQVLTGITDA 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P  S++   + +F   ++   +AHNA+FD+GF+     + N    DP+ ++DTL+
Sbjct: 90  MVRPAPPLSAVLPSWSEF--SRSTVLVAHNARFDIGFLKRAYAQHNYPWGDPT-LVDTLA 146

Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +AR        RN  L++L + +  T    S H AL D+    DV   ++  VG    +F
Sbjct: 147 LARSVLSRGEVRNYKLSTLSQLFRTTTM--SSHRALADARATVDVLHGLIERVG----SF 200

Query: 184 GFKTNED 190
           G  T ED
Sbjct: 201 GVTTLED 207


>gi|307717334|gb|ADN88720.1| DNA polymerase III [Listeria seeligeri]
 gi|307717336|gb|ADN88721.1| DNA polymerase III [Listeria seeligeri]
 gi|307717366|gb|ADN88736.1| DNA polymerase III [Listeria seeligeri]
 gi|307717402|gb|ADN88754.1| DNA polymerase III [Listeria seeligeri]
 gi|307717406|gb|ADN88756.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 12/155 (7%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                 +   F     E +A+   +AHNA FD+GFIN   +++   P   + ++DTL +A
Sbjct: 59  SDPIDVVLKRF----KEWSADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLELA 113

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           R  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 114 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146


>gi|307717332|gb|ADN88719.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 12/155 (7%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                 +   F     E +A+   +AHNA FD+GFIN   +++   P   + ++DTL +A
Sbjct: 59  SDPIDVVLKRF----KEWSADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLELA 113

Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           R  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 114 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146


>gi|222529790|ref|YP_002573672.1| DNA polymerase III subunit alpha [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456637|gb|ACM60899.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM
           6725]
          Length = 1402

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTG DS+ DRIIEIGAV++ +   T R F  F+ P G K      +L GI  + 
Sbjct: 391 VVVDIETTGFDSQRDRIIEIGAVKIENGQITER-FSTFVDPEG-KIPVRISELTGIYQDM 448

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  S    EF  F     +  +AHNA+FD+GF+    Q      +     IDTL +
Sbjct: 449 VDKAPKLSDAILEFEKF--ASGSVLVAHNAQFDIGFLKKAYQECGI--IFDYTYIDTLEL 504

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +RR     S + LN + +   I + H   H A  D+   + ++I ++
Sbjct: 505 SRRLLTDLSSHKLNKVAEFLNIELKHH--HRADSDAETTAGIFISLV 549


>gi|188518224|ref|ZP_03003759.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188998138|gb|EDU67235.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
          Length = 1442

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 7/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FDIETTGL    D IIE GA+ + +  +     Q F+ P    N      L  I+ E 
Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINE-NITNLTNISQEM 468

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-DPSRIIDTL 127
           + D     +   +  + F   N   +AHN   FD+ FIN  L +   +PL +PS  IDTL
Sbjct: 469 VNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLKNPS--IDTL 524

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+
Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVF 568


>gi|153854163|ref|ZP_01995471.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
 gi|149753212|gb|EDM63143.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
          Length = 1513

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 15/170 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           +VFD+ETTG     D+IIEIGAV+ +++ +    F  F+ P  +   P +  +L  ITD+
Sbjct: 471 VVFDLETTGFSPIKDKIIEIGAVK-VEHGEITDKFSTFVNP--KVPIPFQITQLTSITDQ 527

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDT 126
            +   P   ++  +F +F    +A  +AHNA FDV FI  N   Q I  D       +DT
Sbjct: 528 MVIGAPDIETVLPQFLEFIG--DAALVAHNASFDVSFIEQNCRYQDIQPDFTS----VDT 581

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +++AR   P+ S+  LN +     + IS  + H A+ D+   +++++K +
Sbjct: 582 VAMARILLPTLSKYKLNVVAN--ALHISLENHHRAVDDAGATAEIFVKFV 629


>gi|307717344|gb|ADN88725.1| DNA polymerase III [Listeria innocua]
 gi|307717350|gb|ADN88728.1| DNA polymerase III [Listeria innocua]
 gi|307717352|gb|ADN88729.1| DNA polymerase III [Listeria innocua]
 gi|307717386|gb|ADN88746.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 85/153 (55%), Gaps = 8/153 (5%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +  +F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL +AR 
Sbjct: 59  SDPIDVVLKQFREWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAN-NAVVDTLELARF 115

Query: 133 KHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146


>gi|258653407|ref|YP_003202563.1| hypothetical protein Namu_3243 [Nakamurella multipartita DSM 44233]
 gi|258556632|gb|ACV79574.1| DNA polymerase III, epsilon subunit [Nakamurella multipartita DSM
           44233]
          Length = 613

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 6/162 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG     + I EIGAV++    +    F   + P GR   P+   L GIT+  
Sbjct: 50  VVVDLETTGGSPATEAITEIGAVKVRG-GQVLGEFATLVDP-GRTIPPQITMLTGITNAM 107

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P  SS+   F +F   + +  +AHNA+FDVGF+ A   R  + P     ++DT+ +
Sbjct: 108 VYDAPRISSVLPAFLEF--ARGSVLVAHNARFDVGFLRAACAR-QQVPWPGPAVVDTVRL 164

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           AR+  P +    +        +    R  H AL D+    DV
Sbjct: 165 ARKVLPRAEAPSVRLSALAALLGARTRPDHRALTDARATVDV 206


>gi|325661635|ref|ZP_08150259.1| hypothetical protein HMPREF0490_00993 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472162|gb|EGC75376.1| hypothetical protein HMPREF0490_00993 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 238

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 82/161 (50%), Gaps = 11/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL  + D IIEIGAV++ D   T+R F  FL P   + SP   ++ GIT+E 
Sbjct: 6   VAFDLETTGLSEERDSIIEIGAVKVTDGKVTDR-FMEFLKP-AEEISPMITQITGITNEM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    +   +  +F  F  E+    + HN  FD  F+     +         R IDTL I
Sbjct: 64  VAHARNTKEVIDDFMGFCGEEV--LLGHNILFDYKFMKRYACKYQHS--FERRGIDTLKI 119

Query: 130 ARRKHP--SSRNDLNSLCKRYGIT--ISHRSKHGALLDSHL 166
           AR+ H    SR+ L +LC  Y I    +HR+ H AL  + L
Sbjct: 120 ARKVHKDLESRS-LEALCVHYQIKNDAAHRAYHDALATAKL 159


>gi|15616303|ref|NP_244608.1| hypothetical protein BH3741 [Bacillus halodurans C-125]
 gi|10176365|dbj|BAB07460.1| BH3741 [Bacillus halodurans C-125]
          Length = 219

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 7/165 (4%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           VFD ETTG      DR+IE+ AV +     T+ TFQ ++ P  R    E  +L GI+++ 
Sbjct: 29  VFDTETTGFAVGAGDRLIEVAAVHVEGLEVTDFTFQTYVNPE-RNIPAEIEELTGISEDK 87

Query: 70  LKDKPSFSSIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +K+ P+       F+ F  +  +A W+ H A FDV  +  ELQR     L+   + DTL 
Sbjct: 88  VKNAPASLPAIESFFRFVEQSGSAAWVGHYASFDVTVLKKELQRYQFS-LNVPLLFDTLD 146

Query: 129 IARRKHPSS-RNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDV 170
           +     PS    DL    K++G  I   H++   AL  +HL  ++
Sbjct: 147 LIGYISPSKDMRDLEVYAKQFGTYIYERHQALGDALTTAHLFCEL 191


>gi|104161981|emb|CAJ75690.1| DNA polymerase III, alpha subunit [uncultured Thermotogales
           bacterium]
          Length = 1428

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL+ K D IIEIGA++ +  S+   T+  F+ P  ++ S     L GIT++ 
Sbjct: 419 LVFDLETTGLNPKEDEIIEIGAIK-MKGSEVLGTYSTFVKPE-KELSAMITSLTGITEDM 476

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTLS 128
           L +      +  EF  F   +    +AHNA FD GF+ N+  +    D   P   IDTL+
Sbjct: 477 LSEARPIKEVLPEFTKF--TEGCILVAHNASFDYGFVRNSVKKHFGGDWEMPC--IDTLA 532

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+    S    L+++ KR  + + H   H A  D+ + ++V  K +
Sbjct: 533 LAKSLFRSKSYSLDNVVKR--LKLGHFDHHRAFEDAKVTAEVLKKFV 577


>gi|317132568|ref|YP_004091882.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense
           YUAN-3]
 gi|315470547|gb|ADU27151.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense
           YUAN-3]
          Length = 1457

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 89/167 (53%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL+ +NDRI EIGAV + +  +    F +F+ P+ +   P   +L GITD+ 
Sbjct: 444 VAFDLETTGLNRENDRITEIGAVRIRN-GEIGERFDLFVNPH-KPIPPRITELTGITDDM 501

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD         +F+ F  +  A  +AHNA+FD GF  A   R   +   P   +D++ +
Sbjct: 502 VKDAAEEDEALRQFFAFCGD--AVLVAHNAEFDTGFCRAAAARCGME--FPYTYMDSIPL 557

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R   P  +N  L+++    G+ +   + H A  D+ +L  + ++++
Sbjct: 558 CRTVLPGLKNYKLDTVAG--GLHLPPFNHHRASDDAFVLGQILVQVL 602


>gi|188524415|ref|ZP_03004436.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|198273773|ref|ZP_03206307.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|195659873|gb|EDX53253.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|198249528|gb|EDY74310.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
          Length = 1442

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 7/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FDIETTGL    D IIE GA+ + +  +     Q F+ P    N      L  I+ E 
Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINE-NITNLTNISQEM 468

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-DPSRIIDTL 127
           + D     +   +  + F   N   +AHN   FD+ FIN  L +   +PL +PS  IDTL
Sbjct: 469 VNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLKNPS--IDTL 524

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+
Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVF 568


>gi|170288161|ref|YP_001738399.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
 gi|170175664|gb|ACB08716.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
          Length = 1367

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 92/167 (55%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGLD + D IIEIGAV++ D    +  +   + P+ R+ S  + ++ GIT E 
Sbjct: 359 VVLDFETTGLDPQVDEIIEIGAVKIQDGQIVDE-YHTLIKPS-REISRRSSEITGITQEM 416

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128
           L++K S   +  EF  F   +N+  +AHNA FD  F+   ++++    LD  R  IDTL+
Sbjct: 417 LENKRSIEEVLPEFLGFL--ENSIIVAHNANFDYRFLRLWIKKVMG--LDWERPYIDTLA 472

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+         L+S+ ++ G  +     H AL D+ + + V+++ +
Sbjct: 473 LAKSLLKMRSYSLDSVVEKLG--LGPFRHHRALDDARVTAQVFLRFV 517


>gi|148269487|ref|YP_001243947.1| DNA polymerase III PolC [Thermotoga petrophila RKU-1]
 gi|281411795|ref|YP_003345874.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
 gi|166217457|sp|A5IJJ8|DPO3_THEP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|147735031|gb|ABQ46371.1| DNA polymerase III catalytic subunit, PolC type [Thermotoga
           petrophila RKU-1]
 gi|281372898|gb|ADA66460.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
          Length = 1367

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 92/167 (55%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGLD + D IIEIGAV++ D    +  +   + P+ R+ S  + ++ GIT E 
Sbjct: 359 VVLDFETTGLDPQVDEIIEIGAVKIQDGQIVDE-YHTLIKPS-REISRRSSEITGITQEM 416

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128
           L++K S   +  EF  F   +N+  +AHNA FD  F+   ++++    LD  R  IDTL+
Sbjct: 417 LENKRSIEEVLPEFLGFL--ENSIIVAHNANFDYRFLRLWIKKVMG--LDWERPYIDTLA 472

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+         L+S+ ++ G  +     H AL D+ + + V+++ +
Sbjct: 473 LAKSLLKMRSYSLDSVVEKLG--LGPFRHHRALDDARVTAQVFLRFV 517


>gi|39938951|ref|NP_950717.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722060|dbj|BAD04550.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 1571

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 19/173 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D+IIEI  V++   +K    FQ F+ P  +K +     +  ITDE 
Sbjct: 482 VVFDLETTGLSNVRDKIIEIAGVKIKKGNKIGE-FQKFIDPQ-QKLTKTITDITNITDEM 539

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+ + +   +  +F  F   ++   +AHNA FD+ F+  + + + K  L+P  IIDT+++
Sbjct: 540 LQGQQTIDQVLPQFLAF--AKDCVLVAHNASFDINFLKEKAKEL-KISLEPQPIIDTMAL 596

Query: 130 ARRKHPSSRNDLNSLCKRYGI-------TISHRSKHGALLDSHLLSDVYIKMM 175
           ++R         ++L K + +        +     H AL D+   ++++IKM+
Sbjct: 597 SQRY-------FSNLLKYFSLKRLATFFKVKLEDHHRALADATATAEIFIKMI 642


>gi|302872252|ref|YP_003840888.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575111|gb|ADL42902.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 1402

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTG DS+ DRIIEIGAV++ +   T R F  F+ P G K      +L GI  + 
Sbjct: 391 VVVDIETTGFDSQRDRIIEIGAVKIENGQITER-FSTFVDPEG-KIPVRISELTGIYQDM 448

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  S    EF  F     +  +AHNA+FD+GF+    Q      +     IDTL +
Sbjct: 449 VDKAPKLSDAILEFERF--ASGSVLVAHNAQFDIGFLKKAYQECG--IIFDYTYIDTLEL 504

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +RR     S + LN + +   + + H   H A  D+   ++++I ++
Sbjct: 505 SRRLLTDLSSHKLNKVAEFLNVELKHH--HRADSDAETTANIFISLV 549


>gi|226941443|ref|YP_002796517.1| DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9]
 gi|226716370|gb|ACO75508.1| Probable DNA-directed DNA polymerase III [Laribacter hongkongensis
           HLHK9]
          Length = 493

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 19/178 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+ETTG     DRI EIG VE + +  T R  Q  L   G+   P   ++ GI+D  
Sbjct: 7   VIVDLETTGGHITRDRITEIGLVE-VSHGVTTRWSQ--LVNPGQPIPPFIEEMTGISDAM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125
           + + P F+ +        N +    IAHNA+FD GF+  E +R+      DPL       
Sbjct: 64  VAEAPPFAELAPALLARLNGKL--LIAHNARFDYGFLKNEFRRLGLTFTTDPL------C 115

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           T+ ++RR +P  +++ L+SL  R+GI +    +H AL D+     VY+ +    +++ 
Sbjct: 116 TVKLSRRLYPQHAKHSLDSLIARHGIDVPPGMRHRALGDAE---AVYVFLQTAVAELG 170


>gi|148255092|ref|YP_001239677.1| hypothetical protein BBta_3691 [Bradyrhizobium sp. BTAi1]
 gi|146407265|gb|ABQ35771.1| hypothetical protein BBta_3691 [Bradyrhizobium sp. BTAi1]
          Length = 720

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 9/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTG  S  DRI EIGAV++ ++      +   + P  R    + ++L GIT++ 
Sbjct: 547 VVVDIETTGSWSSGDRITEIGAVKVRNHQIVEE-WHSLINPQ-RPIPAKIVELTGITNQM 604

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D P F  I   F  F    +  ++AHN  FD GF++ E +R+ +    P   + T   
Sbjct: 605 VRDAPFFHDIADSFIAFMG--DGIFVAHNVNFDYGFLSYEYERLERRFRFPK--LCTCVG 660

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
            RR++P  ++  L  LC  YGI +     H AL D+
Sbjct: 661 MRRRYPGHKSYGLGKLCAIYGIALD--DHHRALCDA 694


>gi|308807965|ref|XP_003081293.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
 gi|116059755|emb|CAL55462.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
          Length = 1259

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 91/183 (49%), Gaps = 22/183 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           IVFD+ETTGL  +  RIIE+ A  L D S     F   + P GR N P A+K L GIT+ 
Sbjct: 196 IVFDLETTGLSKEKSRIIELAAQSLTDPSA---AFSTLVNP-GRFNIPPAIKALTGITNS 251

Query: 69  FLK--DKPSFSSIFSEFWDFFNEQNAE--------WIAHNAK-FDVGFINAELQRINKDP 117
            +   D PSF+    +F + F EQ  +         +AHNA+ FD  FI  E +R+ ++ 
Sbjct: 252 MVSAPDVPSFAMAAEQF-EMFIEQVRQSRPGAPVLLVAHNARQFDAAFIQYEYRRLGREL 310

Query: 118 LDPSRIIDTLSIAR---RKHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYI 172
               R  DTL +AR   R     +  ++ L   Y I +       H A  D+ +L+D+  
Sbjct: 311 PSSWRFCDTLPLARQLLRPDGLGKFSMDVLRGHYDIELEGGDVQMHRAGTDARVLADILN 370

Query: 173 KMM 175
           KM+
Sbjct: 371 KML 373


>gi|62184729|ref|YP_219514.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3]
 gi|62147796|emb|CAH63542.1| putative DNA polymerase III epsilon chain [Chlamydophila abortus
           S26/3]
          Length = 249

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E TGLD K DRIIE  A+    +     + +  + P+ R  S E+ ++H I+D  
Sbjct: 10  VCLDCEMTGLDVKKDRIIEFAAIRF-TFDSVIDSMETLINPD-RVISAESQRIHHISDAM 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LKD+P  + +F +   F  E +   + H+  FD+  ++ E +RI +  L    IIDTL +
Sbjct: 68  LKDQPRIAEVFPKIKSFLKEGDY-IVGHSVGFDLQVLSQEAERIGETFLSKYYIIDTLRL 126

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           A+    S  N L +L   +   + +   H A+ D
Sbjct: 127 AKEYGDSPNNSLEALAVHF--NVPYDGNHRAMKD 158


>gi|239995207|ref|ZP_04715731.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC
           27126]
          Length = 711

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 9/170 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           IR      +V DIETTG +S  +RI EIG V+L+   + +R FQ  L P  R+      +
Sbjct: 536 IRDPAQPYVVVDIETTGGNSSYNRITEIGMVKLVGGKEVDR-FQTLLNPQ-RRIPSNITR 593

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GI+D+ + D P F+ +     +F   ++A ++AHN  FD GFI  E  R+ +    P 
Sbjct: 594 LTGISDDMVADAPLFAEVAEHVANF--TEDAVFVAHNVNFDYGFIKQEFARLEQSFRRPK 651

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             + T+   RR +P      L +L K + I +     H AL D+   +++
Sbjct: 652 --MCTVREMRRTYPGLPSYSLANLTKHFHIEMEQH--HRALSDAKAAAEL 697


>gi|254502460|ref|ZP_05114611.1| exonuclease family [Labrenzia alexandrii DFL-11]
 gi|222438531|gb|EEE45210.1| exonuclease family [Labrenzia alexandrii DFL-11]
          Length = 471

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 13/170 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGL    D I++IGAV +++       R  Q  L   GR   P + K+HGI+D 
Sbjct: 281 VFDTETTGLMPNKDDIVQIGAVRVVNGRMVPGERIDQ--LVNPGRPIPPASSKVHGISDT 338

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLD-PSRIIDT 126
            + D P      ++F +F  E  +  +AHNA FD+ F    LQ+  K   L+ P  I+DT
Sbjct: 339 MVADAPQPLEAVADFHEFARE--SVIVAHNAPFDLAF----LQKYGKVAGLEWPHPILDT 392

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + ++     S+  + L++LC+R  I I    +H AL D+   ++   K++
Sbjct: 393 VLLSAVVFGSNEVHTLDALCERLCIDIRPEVRHTALGDAEATAEALCKLL 442


>gi|332365809|gb|EGJ43566.1| DNA polymerase III PolC [Streptococcus sanguinis SK355]
          Length = 1462

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTGL +  + +I++ A ++    K N    F  F+ P G   S     L GITD
Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSVFTTDLTGITD 480

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++      +  EF +F   +++  +AHNA FDVGF+N   +R +  P     +IDTL
Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--KDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
             AR  +P   R+ L  L KR+ I + H
Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565


>gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198642|gb|EGD55825.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 623

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 16/186 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG  + +DRI EIGAV++    +    F   + P GR   P+ + L GIT   
Sbjct: 60  VVVDLETTGGSADDDRITEIGAVKIRG-GEVLGEFATLVDP-GRAIPPQIVALTGITTAM 117

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    +   F +F   +    +AHNA+FD+GF+     R+ + P   S  + T+ +
Sbjct: 118 LYDAPRIEEVLPAFAEF--ARGTVLVAHNARFDMGFLRKSAARM-RLPWPFSTSLCTVVM 174

Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFG 184
           ARR   +  +    L++L + + +++  R  H AL D+    +V+ +++  VG    N G
Sbjct: 175 ARRILSRQEAPTVKLSALAELFQVSV--RPTHRALDDARATVEVFHRLLERVG----NQG 228

Query: 185 FKTNED 190
            +T  D
Sbjct: 229 VQTVGD 234


>gi|325524698|gb|EGD02688.1| putative DNA polymerase/helicase [Burkholderia sp. TJI49]
          Length = 374

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 89/163 (54%), Gaps = 10/163 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  S   RI EIG VE+     +  T    L   G+   P   +L GI++  
Sbjct: 16  VFVDLETTGGSSVEHRITEIGVVEIGPLGVSTWTS---LVNPGQSIPPFIQQLTGISEAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+S+    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ +
Sbjct: 73  VRDAPSFASLAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGLA-FNPD-VLCTVRL 128

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +R   P  SR+ L++L +R+G+  +  ++H AL D+ LL   +
Sbjct: 129 SRALFPRESRHGLDALIERHGLVPA--ARHRALADADLLWQFW 169


>gi|71279381|ref|YP_267529.1| exonuclease [Colwellia psychrerythraea 34H]
 gi|71145121|gb|AAZ25594.1| exonuclease [Colwellia psychrerythraea 34H]
          Length = 203

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 88/168 (52%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I+ D ETTGL   N DR IEIGAV+L +   T+R FQ  + P GR  S       GIT+ 
Sbjct: 7   IILDFETTGLSPDNGDRAIEIGAVKLENGVVTDR-FQELMYP-GRPVSHFIADYTGITNV 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L        +   F  F   QN   +AHNA FD  F+++EL+RI+       +   +L 
Sbjct: 65  MLSKAAPCHEVMDRFSGFIQGQN--LVAHNASFDKRFLDSELKRISSGY--DGQFACSLL 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++RR + ++ N  L +L    GI  S+ S H AL DS + + +++ M+
Sbjct: 121 LSRRLYQTAPNHKLGTLINYKGIA-SNGSFHRALYDSEMTAKLWVAML 167


>gi|256375516|ref|YP_003099176.1| hypothetical protein Amir_1378 [Actinosynnema mirum DSM 43827]
 gi|255919819|gb|ACU35330.1| DNA polymerase III, epsilon subunit [Actinosynnema mirum DSM 43827]
          Length = 578

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 14/171 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG  +  D I EIGAV++    +    F   + P  R   P+ + L GIT   
Sbjct: 32  VVFDLETTGPRAAEDGITEIGAVKVRG-GRVIGEFGTLVDPE-RGIPPQIVALTGITQNM 89

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  +S+   F +F   + A  +AHN+ FDVGF+ A  +R       P  ++ T+ +
Sbjct: 90  VTGAPVLASVLPAFLEF--AEGAVLVAHNSGFDVGFMKAACERHGYAWPKPP-VVCTVKL 146

Query: 130 ARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR     + PS +  L++L   +G  +     H AL+D+    +V  +++
Sbjct: 147 ARRVLSREEAPSCK--LSALSALFG--VPEAPNHRALVDARATVEVLHRLL 193


>gi|209554353|ref|YP_002284813.1| DNA polymerase III PolC [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|209541854|gb|ACI60083.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
          Length = 1442

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FDIETTGL    D IIE GA+ + +  +     Q F+ P    N      L  I  E 
Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINE-NITNLTNINQEM 468

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD-PSRIIDTL 127
           + D     +   +  + F   N   +AHN   FD+ FIN  L +   +PL+ PS  IDTL
Sbjct: 469 VNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLENPS--IDTL 524

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+
Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVF 568


>gi|195867849|ref|ZP_03079848.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|195660426|gb|EDX53684.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
          Length = 1442

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FDIETTGL    D IIE GA+ + +  +     Q F+ P    N      L  I  E 
Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINE-NITNLTNINQEM 468

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD-PSRIIDTL 127
           + D     +   +  + F   N   +AHN   FD+ FIN  L +   +PL+ PS  IDTL
Sbjct: 469 VNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLENPS--IDTL 524

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+
Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVF 568


>gi|171920838|ref|ZP_02932008.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
 gi|171903036|gb|EDT49325.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
          Length = 1442

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FDIETTGL    D IIE GA+ + +  +     Q F+ P    N      L  I  E 
Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINE-NITNLTNINQEM 468

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD-PSRIIDTL 127
           + D     +   +  + F   N   +AHN   FD+ FIN  L +   +PL+ PS  IDTL
Sbjct: 469 VNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLENPS--IDTL 524

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+
Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVF 568


>gi|225375372|ref|ZP_03752593.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
           16841]
 gi|225212861|gb|EEG95215.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
           16841]
          Length = 1512

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 95/172 (55%), Gaps = 19/172 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--- 66
           +VFD+ETTG     ++IIEIGAV+++    T+R F  F+ P      P   ++  +T   
Sbjct: 490 VVFDLETTGFSPDKNKIIEIGAVKVVGGVITDR-FSTFVNP----EVPIPFRIEELTSIK 544

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124
           D+ + D P    I  EF  F   + A  +AHNA+FD+ FI  N + Q I ++      II
Sbjct: 545 DDMVIDAPKIEEILPEFMKFC--EGAIMVAHNAEFDMSFIKKNCKDQGIERE----FTII 598

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+++AR   P+ +R  L+++ K   + +S  + H A+ D+   +++++K +
Sbjct: 599 DTVALARILLPNLNRFKLDTVAK--ALNVSLENHHRAVDDAACTAEIFVKFI 648


>gi|225550655|ref|ZP_03771604.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
 gi|225379809|gb|EEH02171.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
          Length = 1442

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FDIETTGL    D IIE GA+ + +  +     Q F+ P    N      L  I  E 
Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINE-NITNLTNINQEM 468

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD-PSRIIDTL 127
           + D     +   +  + F   N   +AHN   FD+ FIN  L +   +PL+ PS  IDTL
Sbjct: 469 VNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLENPS--IDTL 524

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+
Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVF 568


>gi|307717354|gb|ADN88730.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 20/159 (12%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                 +  +F         EW      +AHNA FD+GFIN   +++  +    + ++DT
Sbjct: 59  SDPIDVVLKQF--------KEWSGDNILVAHNASFDMGFINTAYEKVGIEKA-KNAVVDT 109

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           L +AR  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 110 LELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146


>gi|307717346|gb|ADN88726.1| DNA polymerase III [Listeria innocua]
 gi|307717356|gb|ADN88731.1| DNA polymerase III [Listeria innocua]
 gi|307717358|gb|ADN88732.1| DNA polymerase III [Listeria innocua]
 gi|307717360|gb|ADN88733.1| DNA polymerase III [Listeria innocua]
 gi|307717374|gb|ADN88740.1| DNA polymerase III [Listeria innocua]
 gi|307717388|gb|ADN88747.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 84/153 (54%), Gaps = 8/153 (5%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +  +F ++  +     +AHNA FD+GFIN   +++  +    + ++DTL +AR 
Sbjct: 59  SDPIDVVLKQFREWSGDDI--LVAHNASFDMGFINTAYEKVGLEKA-KNAVVDTLELARF 115

Query: 133 KHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146


>gi|194467815|ref|ZP_03073801.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23]
 gi|194452668|gb|EDX41566.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23]
          Length = 283

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 89/163 (54%), Gaps = 11/163 (6%)

Query: 10  IVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL     D+II++ A++ +D  K   TF   + P+G  N+ +++  + I++ 
Sbjct: 16  VSVDTETTGLYPMYGDKIIQLSAIKYID-DKLVDTFDTLINPDGSNNNAKSV--NNISES 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK++P+F  +  +F +F   ++  W+ HN  FD  F+ +E  +I     +    +DTL 
Sbjct: 73  SLKNQPTFDEVIGDFVNFV--EDLPWVGHNLSFDFSFLKSEELKIASFKKNS---VDTLQ 127

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           IAR  + +  N L  L K++   I +++ H +L D+ + + +Y
Sbjct: 128 IARSIYGNKGNKLQQLAKKFN--IDYKNLHNSLYDAQIAASLY 168


>gi|253579638|ref|ZP_04856907.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849139|gb|EES77100.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1489

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 11/170 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGIT 66
           R +VFDIETTG  S   +IIEIGAV + +   T+R F  F+ P  +   P  + +L  I 
Sbjct: 461 RFVVFDIETTGFSSLTCQIIEIGAVLVENGEITDR-FSTFVNP--KVPIPFRIEQLTSIN 517

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P+   +  +F +F   ++A  +AHNA FD+GFI     R+          +DT
Sbjct: 518 DSMVMDAPTIEEVLPKFLEF--SKDAVMVAHNADFDMGFIMKNCDRLGI--AHDFTYVDT 573

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +AR   P+ +R  L+++ K  G+++ +   H A+ D+   +++++K +
Sbjct: 574 VGMARFLLPALNRFKLDTVAKAVGVSLENH--HRAVDDAACTAEIFVKFV 621


>gi|307717320|gb|ADN88713.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717330|gb|ADN88718.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717378|gb|ADN88742.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717380|gb|ADN88743.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717394|gb|ADN88750.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717396|gb|ADN88751.1| DNA polymerase III [Listeria monocytogenes]
          Length = 231

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 20/159 (12%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                 +   F         EW      +AHNA FD+GFIN   +++  +  + + ++DT
Sbjct: 59  SDPIDVVLKRF--------KEWSGDDILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDT 109

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           L +AR  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 110 LELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146


>gi|222099063|ref|YP_002533631.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
 gi|221571453|gb|ACM22265.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
          Length = 1367

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 94/167 (56%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD ETTGLD + D IIEIGAV++ +  +    +   + P+G  +   A ++ GIT E 
Sbjct: 361 VVFDFETTGLDPQVDEIIEIGAVKIKE-GRIIDEYHTLIKPSGTISRKSA-EITGITQEM 418

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLS 128
           L+ + +   +  EF +F   +++  +AHNA FD  F+   ++++  KD   P   +DTL+
Sbjct: 419 LEGERAIEEVLPEFLEFL--EDSILVAHNANFDYRFLRLWIKKVLGKDWEKP--YVDTLA 474

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+         L+S+ K+ G+  S R  H AL D+ + + V+++ +
Sbjct: 475 LAKSLLRLKSYSLDSVVKKLGLG-SFRH-HRALDDARVTAQVFLRFI 519


>gi|91789989|ref|YP_550941.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666]
 gi|91699214|gb|ABE46043.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666]
          Length = 729

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 95/168 (56%), Gaps = 10/168 (5%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGL+ S  D II+IGA+ +++     N T    + P  R+  PE++ +HGIT++
Sbjct: 541 VFDTETTGLEPSAGDEIIQIGAIRIVNGRLLRNETIDQLIDPR-RRLKPESIAIHGITED 599

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K +P+       F +F   ++   +AHNA FD+ F+  +L+  +   +    ++DTL 
Sbjct: 600 MVKGQPTIEQALPAFHEFC--EDTVLVAHNAAFDMRFL--QLKEASTGIVFRQPVLDTLL 655

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++   HP+  +  L ++  R GI +  R  H AL D+ +  ++++KM+
Sbjct: 656 LSALLHPNQESHRLEAIAGRLGINVIGR--HTALGDAIVTGEIFLKMI 701


>gi|307717326|gb|ADN88716.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717328|gb|ADN88717.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717342|gb|ADN88724.1| DNA polymerase III [Listeria marthii]
 gi|307717348|gb|ADN88727.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717364|gb|ADN88735.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717370|gb|ADN88738.1| DNA polymerase III [Listeria marthii]
 gi|307717372|gb|ADN88739.1| DNA polymerase III [Listeria marthii]
 gi|307717376|gb|ADN88741.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717382|gb|ADN88744.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717384|gb|ADN88745.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717398|gb|ADN88752.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717404|gb|ADN88755.1| DNA polymerase III [Listeria monocytogenes]
          Length = 231

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 20/159 (12%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                 +   F         EW      +AHNA FD+GFIN   +++  +  + + ++DT
Sbjct: 59  SDPIDVVLKRF--------KEWSGDDILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDT 109

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           L +AR  +P  +N  LN+L K++ I +     H A+ D+
Sbjct: 110 LELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146


>gi|145219710|ref|YP_001130419.1| DNA polymerase III, epsilon subunit [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205874|gb|ABP36917.1| DNA polymerase III, epsilon subunit [Chlorobium phaeovibrioides DSM
           265]
          Length = 221

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 16/183 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +VFD ETTG D +NDR+I IGAV L   + T   +F+V +   G     E++ +HG+ 
Sbjct: 33  RFVVFDTETTGFDLQNDRVISIGAVALEGSAITIADSFEVLVRQPG-VGQKESVSVHGLL 91

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +    S     + F D+    N+  +A +A FDV  +N  L  + +  L  + ++DT
Sbjct: 92  KKDIASGVSERDGVTSFLDYIG--NSILVAQHASFDVAMLNRLLWELFRIRL-FNGVVDT 148

Query: 127 LSIARR---------KHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMM 175
            S+A+R          H +    L+ LC+RYGI +   H S   A L + LL  +  K  
Sbjct: 149 ASLAKRLEKGPYHNLAHKAGEYRLDHLCQRYGIRLHDRHTSAGDAYLTAQLLQRLLAKGR 208

Query: 176 VGG 178
             G
Sbjct: 209 TAG 211


>gi|188024469|ref|ZP_02997117.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
 gi|188018579|gb|EDU56619.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
          Length = 1442

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FDIETTGL    D IIE GA+ + +  +     Q F+ P    N      L  I+ E 
Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINE-NITNLTNISQEM 468

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-DPSRIIDTL 127
           + D     +   +  + F   N   +AHN   FD+ FIN  L +   +PL +PS  IDTL
Sbjct: 469 VNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLKNPS--IDTL 524

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            I R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+
Sbjct: 525 MILRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVF 568


>gi|183508608|ref|ZP_02958116.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
 gi|182676065|gb|EDT87970.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
          Length = 1442

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FDIETTGL    D IIE GAV + +  +     Q F+ P  + N      L  I+ E 
Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAVIMQNNKQIGEKIQFFVKPIQQINE-NVTNLTNISQEM 468

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-DPSRIIDTL 127
           + +     +   +  + F++     +AHN   FD+ FIN  L +   +PL +PS  IDTL
Sbjct: 469 VNNAIDEKTALLKIKEIFDDH--ILVAHNGINFDINFINQRLLKWGLEPLKNPS--IDTL 524

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M
Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEIAHRADYDAIVLTDVFKVM 571


>gi|332670685|ref|YP_004453693.1| DNA polymerase III subunit epsilon [Cellulomonas fimi ATCC 484]
 gi|332339723|gb|AEE46306.1| DNA polymerase III, epsilon subunit [Cellulomonas fimi ATCC 484]
          Length = 620

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 10/169 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG    +  I EIGAV++    +    FQ  + P G    P    L GIT   
Sbjct: 44  VVVDLETTGGTPADCAITEIGAVKVRG-GQVLGEFQTLVDPGG-PVPPYIQVLTGITTSM 101

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P   ++   F +F    +A  +AHNA FDVGF+ A   R    P   +R++DT+ +
Sbjct: 102 LVGAPRIETVLPSFLEFAG--DAVLVAHNAPFDVGFLKAAAARTGH-PWPGNRVLDTVRL 158

Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR   +  +  + L++L   +  T++    H AL D+    DV   ++
Sbjct: 159 ARRAVTRDEAPNHKLSTLAALFHATVT--PNHRALSDARATVDVLHALL 205


>gi|41408028|ref|NP_960864.1| hypothetical protein MAP1930 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396383|gb|AAS04247.1| hypothetical protein MAP_1930 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 643

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 34/226 (15%)

Query: 10  IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ETTG  S +      D I EIGAV++         F   + P  R   P+ ++L 
Sbjct: 41  VVVDLETTGGRSTSTEETAPDAITEIGAVKVRGGVVLGE-FATLVDPQ-RSIPPQIMRLT 98

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           GIT   + D P+  ++   F +F   ++ A  +AHNA FDVGF+ A  Q+ +     P R
Sbjct: 99  GITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRP-R 157

Query: 123 IIDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-- 175
           ++ T+ +ARR     + PS R  L SL + + +T   +  H AL D+    DV   ++  
Sbjct: 158 VLCTVRLARRVLSREEAPSVR--LASLARLFAVTT--QPTHRALDDARATVDVLHALIER 213

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           VG    N G  T     + + +  +P+++  +R K    R+  E L
Sbjct: 214 VG----NQGVHT-----YADLRGYLPDVTPTQRRK----RVLAEGL 246


>gi|107022085|ref|YP_620412.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116689029|ref|YP_834652.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|170732318|ref|YP_001764265.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|254246035|ref|ZP_04939356.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|105892274|gb|ABF75439.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647118|gb|ABK07759.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|124870811|gb|EAY62527.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|169815560|gb|ACA90143.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 375

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 91/166 (54%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG    + RI EIG VE+     +  T    L   G+   P   +L GI+D  
Sbjct: 16  VFVDLETTGGSLADHRITEIGVVEIGPLGVSTWTS---LVNPGQAIPPFIQQLTGISDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D P+F+S+    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ +
Sbjct: 73  VRDAPTFASLAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGLA-FNPD-VLCTVRL 128

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+G+  +  ++H AL D+ LL   + ++
Sbjct: 129 SRALFPRESRHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172


>gi|37677155|ref|NP_937551.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016]
 gi|320159243|ref|YP_004191621.1| DNA polymerase III subunit alpha [Vibrio vulnificus MO6-24/O]
 gi|37201700|dbj|BAC97521.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016]
 gi|319934555|gb|ADV89418.1| DNA polymerase III alpha subunit [Vibrio vulnificus MO6-24/O]
          Length = 204

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 13/170 (7%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV+L++  +   TFQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPNLGDRAIEIGAVKLVN-GEVVETFQQLMNP-GFRVSSFIESYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RIN D         +L 
Sbjct: 66  MLRSAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCDY--SGEFACSLL 121

Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +ARR     PS +  L  L  RY    +    H AL D+ + + +++ M+
Sbjct: 122 VARRLIQDAPSHK--LGELV-RYKNIDNDGVFHRALADAQMTAKLWLLMV 168


>gi|238062933|ref|ZP_04607642.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149]
 gi|237884744|gb|EEP73572.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149]
          Length = 286

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 9/155 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL S +DRI+EI  V  ++  +    +   + P GR   P+   +H IT E 
Sbjct: 38  VVVDVETTGLSSTSDRIVEIALVR-IEGGRVVDEWATLVDP-GRD--PDPTFVHHITAEM 93

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P+F+ +  E     +   A  +AHNA+F+ GFI  E  R+      P   + TL +
Sbjct: 94  LSGAPTFADVAGEILSRLD--GAVVVAHNARFEEGFIAQEFARVGIS-TAPLPAVCTLRL 150

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           AR+   +    L S C  YGI +     H AL D+
Sbjct: 151 ARQVLAAPNFQLVSCCTVYGIEL--HDAHTALGDT 183


>gi|291166154|gb|EFE28200.1| DNA polymerase III, alpha subunit, Gram-positive type [Filifactor
           alocis ATCC 35896]
          Length = 1407

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 92/167 (55%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG  S ND IIEIGAV++ +    +R F  F+ P  R+      +L  IT+E 
Sbjct: 391 VVFDIETTGFSSINDAIIEIGAVKIKNREIIDR-FSEFVNPK-REIPYHITELTSITNEM 448

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++ +   +   F +F   +++ ++AHN+ FD  FI    +R+  D L     IDT+ +
Sbjct: 449 VCNEDTIEEVLPRFMEF--SKDSVFVAHNSDFDTSFIKENCKRL--DLLYDRIAIDTVEL 504

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R       R+ LN + K+ GI++ +   H A+ D+   + +++K +
Sbjct: 505 SRALLTDLKRHKLNVVAKKLGISLENH--HRAVDDAEATAQIFLKFL 549


>gi|295397429|ref|ZP_06807516.1| DNA polymerase III [Aerococcus viridans ATCC 11563]
 gi|294974330|gb|EFG50070.1| DNA polymerase III [Aerococcus viridans ATCC 11563]
          Length = 314

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 8/173 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ DIETTGL   ND I+E+ A+ + D+ + +RTF   + PN R  S     L GI++  
Sbjct: 26  VMIDIETTGLKPSNDEILELSAIRIRDH-QMDRTFSTLVQPN-RPISGFITNLTGISNHM 83

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P       EF DF  E     + +N  FD+ FI      +   P+  +  +D L+I
Sbjct: 84  VMTAPPIEQAIPEFLDFIQED--IILGYNVNFDLSFIYDTAVNLYNFPVR-NDYLDVLTI 140

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           AR+    + N  L ++ + YG  IS+   H  L D ++  +VY ++     Q+
Sbjct: 141 ARKLVTETPNHKLGTMAQFYG--ISYEGAHRGLTDCYITVEVYNQLFNQAKQV 191


>gi|163732758|ref|ZP_02140203.1| exonuclease, putative [Roseobacter litoralis Och 149]
 gi|161394118|gb|EDQ18442.1| exonuclease, putative [Roseobacter litoralis Och 149]
          Length = 465

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 7/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61
           R   +  +VFD ETTGLD   D ++++GAV +++        F   + P GR   P +  
Sbjct: 267 RLRDLTFVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNP-GRTIPPGSTA 325

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H I D  + D P F      F  F   ++A  +AHNA FD+ F+  + +  N+D    +
Sbjct: 326 VHQINDAMVADAPGFDVACRAFHQF--AEHAVIVAHNAPFDMAFLRRQCR--NQDYAFDN 381

Query: 122 RIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DT+ + A     S+ + L++LC R  + I    +H  L D+   +   + ++
Sbjct: 382 PVLDTVHLSAVVFGGSAEHTLDALCNRLNVHIPDDVRHTGLGDALATAKALVALI 436


>gi|127512799|ref|YP_001093996.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
 gi|126638094|gb|ABO23737.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
          Length = 204

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 78/156 (50%), Gaps = 11/156 (7%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   + DR IEIGAV+L      +R FQ  + P G   S       GIT+ 
Sbjct: 7   VVLDFETTGLSPLQGDRAIEIGAVKLQQGVVVDR-FQQLMNP-GFAVSSFIADYTGITNA 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D PS  ++ ++F DF   Q    +AHNA FD  F+ AE  RI+ +   P     +L 
Sbjct: 65  MLSDAPSCETVMADFADFI--QGCHLVAHNASFDQKFLTAEFARIDLEQSQPFAC--SLL 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGIT---ISHRSKHGA 160
           +ARR   +  N  L +L    GI    + HR+ + A
Sbjct: 121 LARRLFQAVPNHQLGTLVNYLGIANDGVFHRALNDA 156


>gi|296269280|ref|YP_003651912.1| DNA polymerase III subunit epsilon [Thermobispora bispora DSM
           43833]
 gi|296092067|gb|ADG88019.1| DNA polymerase III, epsilon subunit [Thermobispora bispora DSM
           43833]
          Length = 574

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 74/166 (44%), Gaps = 14/166 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG     D I EIGAV++    +    F   + P GR   P    L GITD  
Sbjct: 21  VVFDLETTGGSPAEDAITEIGAVKVCG-GQVRGEFATLIDP-GRPIPPFISVLTGITDAM 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +   P    +   F +F   + A  +AHNA FD+GF+ A         P +P  ++DT  
Sbjct: 79  VVAAPKLPQVLPAFLEFI--RGATLVAHNAPFDLGFLRAACAEYGYPPPANP--VVDTAD 134

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSK----HGALLDSHLLSDV 170
           +ARR       D    CK   +    RS     H AL D+    DV
Sbjct: 135 LARRML---TRDETPDCKLATLARYFRSATEPCHRALADARATVDV 177


>gi|323701859|ref|ZP_08113529.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
           574]
 gi|323533163|gb|EGB23032.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
           574]
          Length = 1421

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 10/175 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           +V D ETTG   + D IIEIGAV+ ++  + +R F   + P+  K  P E  KL GIT +
Sbjct: 410 VVLDFETTGFSPQTDEIIEIGAVKFINGMEVDR-FGTLVKPD--KEIPFEVSKLTGITLD 466

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P      +   +F    +A  +AHNA FD+ F+    ++  +  +  ++++DTL 
Sbjct: 467 MVKDAPDARQALAALREFIG--DAVLVAHNAAFDLSFLKVGFRKYLQVEVT-NQVVDTLG 523

Query: 129 IARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            AR   P  +N  L++L K + I ++  HR+   A     L   +  K +  G+Q
Sbjct: 524 TARVLLPHLKNHKLDTLVKEFKIELANHHRAVDDAAATGKLWQVLLTKAVEQGAQ 578


>gi|309791196|ref|ZP_07685728.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
 gi|308226758|gb|EFO80454.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
          Length = 272

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 26/203 (12%)

Query: 10  IVFDIETTGLDSK-NDRIIEIG-------AVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + FD+ETTGLD +   R+ E+        AVE  DY  +       L P+ R   PEA  
Sbjct: 15  VFFDLETTGLDLRAGHRVCELALLRVRGAAVE--DYLGSA------LRPD-RLLDPEAAA 65

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           ++G  D  L+  P F+S+            A  IAHN  FD+ F+NAEL RI + PL  S
Sbjct: 66  VNGFQDAELRGAPRFASVAGRVQRM--AHGAVLIAHNLPFDMAFLNAELARIGQPPLA-S 122

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
             +DTL +ARR        L +L + +G+    R  H AL D   L  V+ ++ +  +++
Sbjct: 123 VTLDTLVLARRLLRRPSYSLAALAEHFGLP---RPTHRALADVLALRGVFAQLQLAMAEL 179

Query: 182 NFGFKTNEDRFFKEEKKTVPNIS 204
             G  T +D   + E+   P ++
Sbjct: 180 --GVTTLQD-VLRLERGLAPGVA 199


>gi|307243534|ref|ZP_07525682.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptostreptococcus stomatis DSM 17678]
 gi|306493090|gb|EFM65095.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptostreptococcus stomatis DSM 17678]
          Length = 1202

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 11/171 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGIT 66
           R +VFDIETTG     D I EIGAV L D    +R F  F+ P  + + P E  +L  IT
Sbjct: 186 RFVVFDIETTGFSVTGDNITEIGAVLLEDGQIKDR-FSTFVNP--KMDIPYEVQELTNIT 242

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++D P      ++F DF   +++  +AHNA FD GFI  +   +  D       +DT
Sbjct: 243 NDMVEDAPGIEEALNKFMDF--AKDSILVAHNAYFDTGFIAQKCSEVGLDY--KHEKLDT 298

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           L +AR   P   R  L+ L K   I +S    H A+ D+   + ++++ + 
Sbjct: 299 LLLARVLMPHMKRFGLDRLTKALSINLS--GHHRAVNDAEATAQLFLRFIA 347


>gi|302389800|ref|YP_003825621.1| DNA polymerase III catalytic subunit, PolC type
           [Thermosediminibacter oceani DSM 16646]
 gi|302200428|gb|ADL07998.1| DNA polymerase III catalytic subunit, PolC type
           [Thermosediminibacter oceani DSM 16646]
          Length = 1415

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 7/151 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTGL    D IIEIGAV++      +R F  F+ P GR  S     L GI +  
Sbjct: 405 VVTDIETTGLSLDADEIIEIGAVKVYRGQIIDR-FHSFVNP-GRPISSHITNLTGINNAM 462

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P    + S+F  F    N  ++AHNA+FD GFI  + ++      D ++++DTL++
Sbjct: 463 VSQAPPVKDVMSDFLRFIG--NGIFVAHNAEFDAGFIRRDCKKFGMK-FD-NKVMDTLNL 518

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHG 159
           +    P  +N  L+++ K++ I +    + G
Sbjct: 519 SALVFPELKNHRLDTIAKKFNINMGSHHRAG 549


>gi|23099217|ref|NP_692683.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Oceanobacillus iheyensis HTE831]
 gi|22777446|dbj|BAC13718.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 939

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 95/174 (54%), Gaps = 17/174 (9%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D+ETTG   SKND+IIEIG V +++  +   T   F  P G+   P    L GI+
Sbjct: 3   RFVVIDLETTGHAPSKNDKIIEIGMV-IIEGDEIIDTKTTFFNP-GQPIPPFITNLTGIS 60

Query: 67  DEFLKDKPSFS----SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           D+ + D P F+    SI S   D +       IAHN  FD+GF+NAEL+    D L  ++
Sbjct: 61  DDDVADAPLFTEKALSIKSILEDSY------IIAHNVNFDLGFLNAELKENGIDRLH-NQ 113

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++DT+ ++R   P++    L+ L   +   + H   H AL D+++ + ++ K+M
Sbjct: 114 VLDTVELSRILFPTAPGYKLSQLSDHFN--LQHDDPHRALSDAYVTAKLFQKLM 165


>gi|291320001|ref|YP_003515259.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae]
 gi|290752330|emb|CBH40301.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae]
          Length = 1459

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 6/168 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FDIETTGL  K   IIE GAV++    K  +  Q F+ P  +  +    +L GIT + 
Sbjct: 426 VSFDIETTGLSPKFHEIIEFGAVDINQDLKVGKVTQFFIKPQAKIGA-FTTELTGITQQM 484

Query: 70  LKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L  +  S        +D  + + A  IAHNAKFD  F+  +  R+N  P     +IDTL 
Sbjct: 485 LDSEGLSIKDGLQRIYDCLDGKVA--IAHNAKFDFNFLKEQF-RLNNVPFPNVTVIDTLI 541

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +R   P+  R+ L  +  R G+       H    D+ +L++V++ ++
Sbjct: 542 ASRIGFPNYKRHKLEDVASRLGVVYDPNVAHRGDYDAKVLANVWVNII 589


>gi|195542024|gb|ACF98221.1| putative DNA polymerase III epsilon subunit [uncultured bacterium
           1114]
          Length = 312

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 17/177 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLH 63
           +++     D ETTGLD   DRI+ IGAV L       +RTF+  + P G      A  +H
Sbjct: 24  SELPVTALDTETTGLDPGRDRIVAIGAVRLHGRRLYPSRTFETLVRP-GISIPASASAIH 82

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDP--L 118
           GI D  +   P  + I+     +   +    + H+  FD+  I A  +R      +P  L
Sbjct: 83  GIGDAMVAGAPGMAEIWPRLSPWLAGRVV--LGHHVDFDLAMIGAAARRHGFSWTEPFAL 140

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D +R++  L        SS  DL+   +R+G+T+  R  H AL DS + + VY++++
Sbjct: 141 DTARLVAALD------GSSPVDLDEAAQRHGVTLEGR--HSALGDSLIAARVYLRLV 189


>gi|256544693|ref|ZP_05472065.1| Gram-positive family DNA polymerase III, alpha subunit
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399582|gb|EEU13187.1| Gram-positive family DNA polymerase III, alpha subunit
           [Anaerococcus vaginalis ATCC 51170]
          Length = 1398

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 17/172 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPE-ALKLHGI 65
           R IVFD+ETTGL    D+I EIGAV++    +     +VF    N  K  P+  ++L GI
Sbjct: 383 RFIVFDLETTGLSKYIDKITEIGAVKI----ENGEIIEVFNELVNPEKMIPQKVVELTGI 438

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--DPLDPSRI 123
           T+E + DKP    +  +F +F   +++ ++  N  FD+GFI      ++   +P+     
Sbjct: 439 TNEMVMDKPKIDEVLPKFLEF--SKDSYFVGQNTDFDIGFIKEACDNLSYKFEPI----Y 492

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +DTL +AR   P+  R  L+ L K+ G  +   + H A  D+   + ++IK+
Sbjct: 493 LDTLPMARAVFPTMGRFSLDKLAKKLG--VGPFNHHRASDDAMTTAKIFIKL 542


>gi|185178976|ref|ZP_02964733.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|225551037|ref|ZP_03771983.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
 gi|184209258|gb|EDU06301.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|225378852|gb|EEH01217.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
          Length = 1442

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FDIETTGL    D IIE GA+ + +  +     Q F+ P    N      L  I  E 
Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINE-NITNLTNINQEM 468

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-DPSRIIDTL 127
           + D     +   +  + F+  N   +AHN   FD+ FIN  L +    PL +PS  IDTL
Sbjct: 469 VNDAIDEKTALLKIKEIFD--NHILVAHNGISFDINFINQRLLKWGLKPLKNPS--IDTL 524

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+
Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVF 568


>gi|221213616|ref|ZP_03586590.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
 gi|221166405|gb|EED98877.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
          Length = 375

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 18/163 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG      RI EIG VE+     +  T+   + P G+   P   +L GI+D  
Sbjct: 16  VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSRIID 125
           ++D PSF+ +    ++  + +   ++AHNA FD GF+ AE +R     N D      ++ 
Sbjct: 73  VRDAPSFAELAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGFAFNPD------VLC 124

Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           T+ ++R   P  SR+ L++L  R+G+  +  ++H AL D+ LL
Sbjct: 125 TVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLL 165


>gi|221206334|ref|ZP_03579347.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
 gi|221173643|gb|EEE06077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
          Length = 375

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 18/163 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG      RI EIG VE+     +  T+   + P G+   P   +L GI+D  
Sbjct: 16  VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSRIID 125
           ++D PSF+ +    ++  + +   ++AHNA FD GF+ AE +R     N D      ++ 
Sbjct: 73  VRDAPSFAELAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGFAFNPD------VLC 124

Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           T+ ++R   P  SR+ L++L  R+G+  +  ++H AL D+ LL
Sbjct: 125 TVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLL 165


>gi|189349710|ref|YP_001945338.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
 gi|189333732|dbj|BAG42802.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 375

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 18/163 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG      RI EIG VE+     +  T+   + P G+   P   +L GI+D  
Sbjct: 16  VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSRIID 125
           ++D PSF+ +    ++  + +   ++AHNA FD GF+ AE +R     N D      ++ 
Sbjct: 73  VRDAPSFAELAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGFAFNPD------VLC 124

Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           T+ ++R   P  SR+ L++L  R+G+  +  ++H AL D+ LL
Sbjct: 125 TVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLL 165


>gi|154246367|ref|YP_001417325.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
 gi|154160452|gb|ABS67668.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
          Length = 719

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 20/173 (11%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEA-LKLHGITD 67
           VFD ETTGLD +  D I++IGA  +++     +  F   + P  +++ PEA + +HGI  
Sbjct: 531 VFDTETTGLDPAGGDEILQIGATRIVNGRLLASECFDQLVDP--QRSIPEAGIAVHGIRP 588

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI----NAELQRINKDPLDPSRI 123
           E ++ KP+   +   F  F    +   + HN  FD+ F+    NA   R ++       +
Sbjct: 589 EMVRGKPTLPQVLPAFHAF--AADTVLVGHNVAFDMRFLTLKENASGVRFDQP------V 640

Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DTL +A   HP    + L ++  R GI +S R  H AL D+   +++++K++
Sbjct: 641 LDTLLLAAIVHPGEDSHGLEAMAARLGIAVSGR--HTALGDALATAEIFLKLL 691


>gi|302392350|ref|YP_003828170.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium
           arabaticum DSM 5501]
 gi|302204427|gb|ADL13105.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium
           arabaticum DSM 5501]
          Length = 1440

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 84/160 (52%), Gaps = 9/160 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           IVFD+ETTG +  ++ IIEIGA ++ D    +R F   + P      PE  ++L GI + 
Sbjct: 429 IVFDLETTGFNPYHNEIIEIGAAKVKDGRIIDR-FGTLVDP--ETEIPERIVELTGIDNS 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  KP      +EF DF  E  A  +AHN  FD  FIN +LQ I +  LD S  +DTL+
Sbjct: 486 MVAGKPKKEEALNEFLDFVGE--ATIVAHNLSFDRNFINNKLQAIGESALDNSA-LDTLN 542

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           +AR         LN L K +  ++ +   H A+ D+ + +
Sbjct: 543 LARALLDLKSFKLNRLAKEFDKSLDNH--HRAVDDAEVTA 580


>gi|251779220|ref|ZP_04822140.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243083535|gb|EES49425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 1452

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEAL-KLHGITD 67
           +VFD+ETTG    ND+IIEIGAV++    K+      F C  N +++ P  + +L  I +
Sbjct: 440 VVFDLETTGFSPINDKIIEIGAVKI----KSGEIIDKFSCFVNPKRDIPYKITQLTSIDN 495

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +KD     +I  +F +F   +    +AHNA FD GFI    + +N +   P  I+DT+
Sbjct: 496 NMVKDADVIENILPKFMEFC--EGTVVVAHNAAFDTGFIKKNCRDLNINFDLP--ILDTV 551

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++ R  +P  +   LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 552 TLCRFLYPELKKVKLNIVAKFLGISLENH--HRAVDDAKATADILLK 596


>gi|28900648|ref|NP_800303.1| hypothetical protein VPA0793 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153836411|ref|ZP_01989078.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ3810]
 gi|28809028|dbj|BAC62136.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149750313|gb|EDM61058.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ3810]
          Length = 214

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 13/172 (7%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV+L+D    + +FQ  + P G + S       GIT+ 
Sbjct: 18  VVLDFETTGLSPTLGDRAIEIGAVKLVDGEVVD-SFQQLMNP-GFRVSSFIENYTGITNN 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  PS   + + F +F + +N   IAHNA FD  F++AEL+RIN           +L 
Sbjct: 76  MLRTAPSCEEVMASFSEFIDGEN--LIAHNASFDKRFLDAELERINCGY--SGEFACSLL 131

Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +ARR     PS +  L  L  RY    +    H AL D+ + + +++ M+ G
Sbjct: 132 VARRLIQDAPSHK--LGELV-RYKNIDNDGVFHRALADAQMTAKLWLLMVEG 180


>gi|225076263|ref|ZP_03719462.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens
           NRL30031/H210]
 gi|224952387|gb|EEG33596.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens
           NRL30031/H210]
          Length = 463

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 13/170 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           +V D+ETTG +   DRI E+  V       T+    V  C    ++ PE   +L GI DE
Sbjct: 22  VVVDLETTGGNFYQDRITEVALVRFEQGRATHYEQLVNPC----RSIPEFVARLTGIHDE 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+ P F+ I ++       Q A  +AHN++FD  F+  E  RI+ D   PS  + T+ 
Sbjct: 78  TVKNAPVFADIAADLLPLL--QGAVVVAHNSRFDYTFLRHEFARIHTDFAAPS--LCTVQ 133

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           ++RR +P   ++ L+S+ +R GI  ++R  H A+ D   L D Y+++ + 
Sbjct: 134 LSRRLYPEFYKHSLDSIIERTGIQTANR--HRAMTDVAALCD-YLELSLA 180


>gi|194246813|ref|YP_002004452.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
 gi|193807170|emb|CAP18609.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
          Length = 1449

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 105/195 (53%), Gaps = 18/195 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD ETTGL   ND+IIEI A+++ + ++    FQ  + P  ++ +P    L  I+++ 
Sbjct: 410 VIFDFETTGLSKINDQIIEIAAIKIQN-NQIIDEFQTLINPQ-QELTPFIENLTNISNQD 467

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-INAELQRINKDPLDPSRIIDTLS 128
           LK++P  ++I  +F  F   +N+  IAHN  FD+GF +N   + +N     P   IDTL+
Sbjct: 468 LKNQPLIATILPKFLKFC--ENSILIAHNISFDMGFLVNQTKKHLNLKLNLP--FIDTLN 523

Query: 129 IARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR    S+    +L SL K +   IS  + H A      +SDV I   +    +N+   
Sbjct: 524 LARYCLDSNLRYFNLKSLAKYFK--ISFENHHRA------MSDVLITKTIFQQLLNYLL- 574

Query: 187 TNEDRFFKEEKKTVP 201
           T   +F+++ K T+P
Sbjct: 575 TKNIQFYQQLKLTLP 589


>gi|188589600|ref|YP_001920613.1| DNA polymerase III PolC [Clostridium botulinum E3 str. Alaska E43]
 gi|188499881|gb|ACD53017.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 1452

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEAL-KLHGITD 67
           +VFD+ETTG    ND+IIEIGAV++    K+      F C  N +++ P  + +L  I +
Sbjct: 440 VVFDLETTGFSPINDKIIEIGAVKI----KSGEIIDKFSCFVNPKRDIPYKITQLTSIDN 495

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +KD     +I  +F +F   +    +AHNA FD GFI    + +N +   P  I+DT+
Sbjct: 496 NMVKDADVIENILPKFMEFC--EGTVVVAHNAAFDTGFIKKNCRDLNINFDLP--ILDTV 551

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++ R  +P  +   LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 552 TLCRFLYPELKKVKLNIVAKFLGISLENH--HRAVDDAKATADILLK 596


>gi|161525562|ref|YP_001580574.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
           17616]
 gi|160342991|gb|ABX16077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 398

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 18/167 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG      RI EIG VE+     +  T+   + P G+   P   +L GI+D  
Sbjct: 39  VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 95

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSRIID 125
           ++D PSF+ +    ++  + +   ++AHNA FD GF+ AE +R     N D      ++ 
Sbjct: 96  VRDAPSFAELAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGFAFNPD------VLC 147

Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           T+ ++R   P  SR+ L++L  R+G+  +  ++H AL D+ LL   +
Sbjct: 148 TVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLLWQFW 192


>gi|221201212|ref|ZP_03574252.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
 gi|221179062|gb|EEE11469.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
          Length = 398

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 18/167 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG      RI EIG VE+     +  T+   + P G+   P   +L GI+D  
Sbjct: 39  VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 95

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSRIID 125
           ++D PSF+ +    ++  + +   ++AHNA FD GF+ AE +R     N D      ++ 
Sbjct: 96  VRDAPSFAELAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGFAFNPD------VLC 147

Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           T+ ++R   P  SR+ L++L  R+G+  +  ++H AL D+ LL   +
Sbjct: 148 TVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLLWQFW 192


>gi|308273149|emb|CBX29752.1| hypothetical protein N47_F14470 [uncultured Desulfobacterium sp.]
          Length = 182

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 98/174 (56%), Gaps = 9/174 (5%)

Query: 5   NKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N  + ++FD+ETTG + ++  RIIEIG V + + +  +    +  C  G+  S +A K++
Sbjct: 13  NSDKYVIFDVETTGFNPQHGARIIEIGVVHIENGNIISEFKSLINC--GKAVSKQAQKVN 70

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT+E L  +P+   +F +F  F ++  +  +AHNA FD+ F+  EL R+    +  +  
Sbjct: 71  GITNEMLSGEPTPEEVFPDFLKFISK--STLVAHNAVFDISFLRYELSRLGF--VLSNDY 126

Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITIS-HRSKHGALLDSHLLSDVYIKMM 175
           + TL+I+R+  P   N  L ++ K   + +  +   H AL D+ L + ++++MM
Sbjct: 127 LCTLNISRKIFPDLENHKLLTVAKHILVNLPKNLHLHRALDDARLTAMIWMEMM 180


>gi|110678446|ref|YP_681453.1| exonuclease, putative [Roseobacter denitrificans OCh 114]
 gi|109454562|gb|ABG30767.1| exonuclease, putative [Roseobacter denitrificans OCh 114]
          Length = 465

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 7/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61
           R   +  +VFD ETTGLD   D ++++GAV +++        F   + P GR   P +  
Sbjct: 267 RLRDLTFVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNP-GRTIPPGSTA 325

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H I+D  + D P F      F  F   ++A  +AHNA FD+ F+  + +  ++D    +
Sbjct: 326 VHQISDAMVADAPGFDVACRAFHQF--AEHAVIVAHNAPFDMAFLRRQCR--DQDYAFDN 381

Query: 122 RIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            I+DT+ + A     S+ + L++LC R  + I    +H  L D+   +   + ++
Sbjct: 382 PILDTVHLSAVVFGGSAEHTLDALCDRLNVHIPDDVRHTGLGDALATAKALVALI 436


>gi|311695934|gb|ADP98807.1| DNA polymerase III, epsilon subunit [marine bacterium HP15]
          Length = 486

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 9/153 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIETTG +S  DRI EIG +      +    +Q  L P  R  SP      GI++E + 
Sbjct: 16  LDIETTGGNSARDRITEIG-IRFWRAGEVVGEWQTLLNPETRI-SPFIENFTGISNEMVA 73

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D P F  +  E       +   ++AHNA+FD GFI +E +R+ +  L  ++++ T+ ++R
Sbjct: 74  DAPLFEEVADELEAQL--KGKVFVAHNARFDYGFIKSEFRRLGR--LFSAKVLCTVKLSR 129

Query: 132 RKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163
           R +P   R+++++L  R+G+    R  H A+ D
Sbjct: 130 RLYPEFRRHNMDALIARHGLARVQR--HRAMGD 160


>gi|146297347|ref|YP_001181118.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410923|gb|ABP67927.1| DNA polymerase III catalytic subunit, PolC type
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 1402

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTG D++ DRIIEIGAV++ +    +R F  F+ P G K      +L GI    
Sbjct: 391 VVVDIETTGFDNQKDRIIEIGAVKIENGEIVDR-FSTFVDPEG-KIPIRISELTGIYQNM 448

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P  S    EF  F +   A  +AHNA+FD+GF+    Q      +     IDTL +
Sbjct: 449 VDNAPKLSDAILEFEKFCS--GAILVAHNAQFDIGFLKRSYQECGL--IFDYTYIDTLEL 504

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +RR     S + LN + +   I + H   H A  D+   + ++I ++
Sbjct: 505 SRRVLTDLSSHKLNKVAEFLNIELKHH--HRADSDAETTAKIFISLI 549


>gi|268610447|ref|ZP_06144174.1| DNA polymerase III, alpha subunit [Ruminococcus flavefaciens FD-1]
          Length = 1441

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 99/180 (55%), Gaps = 11/180 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           IVFD+ETTGL+ + DR+ EIGAV+L +    + +F   + P   K  PE + +L GI+D 
Sbjct: 426 IVFDVETTGLNFRTDRLTEIGAVKLKNLQVVD-SFNTKVNP--EKPIPEKITELTGISDA 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P  +     F +F  ++    IAHNA++D   IN   +R N D  D +  +DTL 
Sbjct: 483 DVKDAPHEAEALRMFMEFCGDKPV-LIAHNARYDTNMINQVCKRQNID-FDYTW-VDTLV 539

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           + +   P   R+ LN + K+  + +     H A  D+ +L+ +YI+ + G  + + GFK+
Sbjct: 540 MCQSMLPEMGRHKLNLVAKQ--LKLGKFDHHRASDDALMLAKIYIE-LAGRLKNDRGFKS 596


>gi|225018411|ref|ZP_03707603.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum
           DSM 5476]
 gi|224948829|gb|EEG30038.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum
           DSM 5476]
          Length = 1453

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 13/168 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD ETTGL+++ +R+ EIGAV +L   +    +  F+ P  +   P+  +L GITD  
Sbjct: 435 VVFDTETTGLNAQTERLTEIGAV-VLKNGEITEEYDEFVNPE-KPIPPKITELTGITDSM 492

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDPSRIIDTL 127
           + D P+       F+ F   +    IAHNA FD+GF+ A   R  ++ D       IDTL
Sbjct: 493 VADAPTEKEALERFFAF--AKGRILIAHNANFDMGFLAAAAARHGLSCD----FTYIDTL 546

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            I R   P+ RN  L+++ K   + +   + H A  D+ +L  V+ ++
Sbjct: 547 PIVRTLFPTLRNHKLDTVVKH--LKLGDFNHHRACDDAKILGLVFAEV 592


>gi|260365523|ref|ZP_05778060.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus K5030]
 gi|260877586|ref|ZP_05889941.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AN-5034]
 gi|260895401|ref|ZP_05903897.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|260901674|ref|ZP_05910069.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ4037]
 gi|308085274|gb|EFO34969.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308090931|gb|EFO40626.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AN-5034]
 gi|308108950|gb|EFO46490.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ4037]
 gi|308114429|gb|EFO51969.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus K5030]
          Length = 204

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 13/172 (7%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV+L+D    + +FQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPTLGDRAIEIGAVKLVDGEVVD-SFQQLMNP-GFRVSSFIENYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  PS   + + F +F + +N   IAHNA FD  F++AEL+RIN           +L 
Sbjct: 66  MLRTAPSCEEVMASFSEFIDGEN--LIAHNASFDKRFLDAELERINCGY--SGEFACSLL 121

Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +ARR     PS +  L  L  RY    +    H AL D+ + + +++ M+ G
Sbjct: 122 VARRLIQDAPSHK--LGELV-RYKNIDNDGVFHRALADAQMTAKLWLLMVEG 170


>gi|82703123|ref|YP_412689.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
 gi|82411188|gb|ABB75297.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 463

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 89/166 (53%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+ETTG    +DRIIEI  +   +  ++ R ++  + P G    P    L GI++  
Sbjct: 7   VILDLETTGGTPLHDRIIEIALIRFEEGMESER-WETLVNP-GISIPPFITHLTGISNGM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD PSF  I    + F +   A   AHN +FD GF+  E +R+    L   R++ T  +
Sbjct: 65  VKDAPSFGDIAHRLYGFLD--GAVLAAHNVRFDYGFLKNEYRRMGA--LLQHRVLCTARL 120

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R+ +P  + + L+++ +R+G+    R  H A+ D  L++  Y++M
Sbjct: 121 SRKLYPQHKGHGLDAIMQRHGLKTEMR--HRAMGDVELVA-AYLEM 163


>gi|291301852|ref|YP_003513130.1| DNA polymerase III subunit epsilon [Stackebrandtia nassauensis DSM
           44728]
 gi|290571072|gb|ADD44037.1| DNA polymerase III, epsilon subunit [Stackebrandtia nassauensis DSM
           44728]
          Length = 578

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 14/171 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG+ S    I EIGAV++    +    +   + P G         L GITD  
Sbjct: 27  MVVDLETTGVASDACSITEIGAVKVRG-GEVLGEYATLVNP-GEAIDARISALTGITDAM 84

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F +F   + A W+AHNA FDVGF+ +   +    P    +++DT+ +
Sbjct: 85  VADAPAIEEVLPSFLEF--ARGAVWVAHNAPFDVGFLRSACAQAEL-PWPRPQVVDTVVL 141

Query: 130 ARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR     + P+ R  L++L + +G  +  +  H AL D+    DV   ++
Sbjct: 142 ARRLVDRSEVPNKR--LSTLARYFGARV--KPSHRALDDARATVDVLHALL 188


>gi|239617281|ref|YP_002940603.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239506112|gb|ACR79599.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 1430

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 95/167 (56%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGLD   D IIEIGAV+ L  ++    F  F+ P  R  S +  ++ GI+D  
Sbjct: 420 VVFDLETTGLDPSADEIIEIGAVK-LKGTEVIGEFSSFVKPE-RNLSEKVTRITGISDRE 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTLS 128
           L+D PS S +  +F +F   +++  +AHNA FD  F+ NA  Q  N+D   P   IDTL+
Sbjct: 478 LEDAPSLSEVLPKFLEFC--KDSVLVAHNATFDYRFVRNAVKQLYNEDWKLP--YIDTLA 533

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +++    S    L+++ KR  + +     H A  D+ + ++V+ K++
Sbjct: 534 LSKSLLKSKSYSLDNVVKR--LKLGDFEHHRASEDARITAEVFKKLL 578


>gi|326407708|gb|ADZ64779.1| DNA polymerase III subunit alpha, Gram-positive type [Lactococcus
           lactis subsp. lactis CV56]
          Length = 1638

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL + ++ +I+I A ++   +  +  F  F+ P G + S    +L GITD+ 
Sbjct: 597 VVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDDH 654

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+      + ++F  F   +    +AHNA FDVGF+N    R N  P+    ++DTL  
Sbjct: 655 VKNAKPLYEVLTKFQKFC--EGTILVAHNATFDVGFMNMNYSR-NGLPIITQPVVDTLEF 711

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           AR  +P   R  L  L K++ I + +   H A  D+
Sbjct: 712 ARNLYPEMKRFGLGQLTKKFQIGLEYH--HMANFDA 745


>gi|119387836|ref|YP_918870.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119378411|gb|ABL73174.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 706

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 96/177 (54%), Gaps = 16/177 (9%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALK 61
            ++   VFD ETTGL+ ++ D II+IGA+ +L+  K  R   F   + P GR+  PE++ 
Sbjct: 512 ERLSYTVFDTETTGLNPAQGDEIIQIGALRILN-GKLLRGERFDQLVDP-GREIPPESIP 569

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            HGI  E ++ +P  + +   F  + +  +   + HN  FD+ F+  +L+          
Sbjct: 570 YHGIHPEMVQGQPRIAEVLPAFHAYAS--DTVLVGHNVAFDMRFL--QLKEAATGLRFDQ 625

Query: 122 RIIDTL---SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DTL   SIA+   PS  + L ++  R G+ I+ R  H AL D+ + ++V+++++
Sbjct: 626 PVLDTLLLASIAQPHEPS--HSLEAIAARLGVEITQR--HNALSDALVTAEVFLRLL 678


>gi|47458892|ref|YP_015754.1| DNA polymerase III PolC [Mycoplasma mobile 163K]
 gi|47458220|gb|AAT27543.1| DNA polymerase III alpha subunit [Mycoplasma mobile 163K]
          Length = 1433

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 10/175 (5%)

Query: 2   IRKNKMRK----IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           ++KN + K    +VFD+ETTGL    D IIE GA ++L+  K   T Q F+ PN ++ S 
Sbjct: 389 LKKNTLIKNETYVVFDLETTGLSPIFDDIIEFGAQKILN-GKVIDTLQFFVKPN-KEISE 446

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +   + GI ++ +++  S      +  +F  +     +AHNA FD+ FIN ++++ N   
Sbjct: 447 KITLITGIKNQDVENAISEKEALKKILEFMGDHTV--VAHNATFDMNFINEKIEKYNFQE 504

Query: 118 LDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +  +IIDTL +++   P ++   L +L  R GI  +    H A  D+ +L+ V+
Sbjct: 505 SNL-QIIDTLVVSKIIEPEAKKFSLENLASRSGIIYNSTEAHRADYDADVLAKVW 558


>gi|162455854|ref|YP_001618221.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum 'So ce
           56']
 gi|161166436|emb|CAN97741.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum 'So ce
           56']
          Length = 258

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 79/156 (50%), Gaps = 16/156 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ETTG D   DRIIE+G V  +  S    T   +L   GR    E+  +HGI D  ++
Sbjct: 48  VDVETTGRDPAGDRIIELGIV--IGRSGEILTRYNWLIHPGRPIPAESTAIHGIKDADVE 105

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-------I 124
            KPSF+ +  E    F  + A   A+NA FD  F+ AEL+R+   P +P          +
Sbjct: 106 GKPSFAEVAEEILGCF--KGAIPAAYNATFDRSFLLAELERVGMRPREPPPAMRREVDWV 163

Query: 125 DTLSIARR--KHPSSRNDLNSLCKRYGITI--SHRS 156
           D L+ AR   K+  SR  L  +  R GI++  +HR+
Sbjct: 164 DPLTFARELYKNEESRA-LGDMAARLGISLEKAHRA 198


>gi|312127164|ref|YP_003992038.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777183|gb|ADQ06669.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 1402

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTG DS+ DRIIEIGAV++ +   T + F  F+ P G K      +L GI  + 
Sbjct: 391 VVVDIETTGFDSQRDRIIEIGAVKIENGQITEK-FSTFVDPEG-KIPVRISELTGIYQDM 448

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  S    EF  F     +  +AHNA+FD+GF+    Q      +     IDTL +
Sbjct: 449 VDKAPKLSDAILEFEKF--ASGSVLVAHNAQFDIGFLKKAYQECG--IIFDYTYIDTLEL 504

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +RR     S + LN + +   + + H   H A  D+   + ++I ++
Sbjct: 505 SRRLLTDLSSHKLNKVAEFLNVELKHH--HRADSDAETTAGIFISLV 549


>gi|31747869|gb|AAN10194.1| DNA polymerase III epsilon subunit [Candidatus Fritschea bemisiae]
          Length = 249

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 26/195 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD E+TGLD + DRIIEI A++   ++    + +  + P       E  ++H ITDE 
Sbjct: 10  VCFDCESTGLDPEKDRIIEIAAIK-FSFNAIIDSIEDLINPETLIPQ-ETTRIHHITDEM 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-----I 124
           ++  P  + +   + DF  E     + H   FD+  + AE +R       PSR+     +
Sbjct: 68  VQKSPKINEVIQSYLDFIGESIV--VGHGIPFDLALLEAEAKRAGV----PSRLLNQRYL 121

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           DTL +AR    S  N L SL K + I    +HR+          +SDV + + V    ++
Sbjct: 122 DTLRLARLYGESPTNSLESLRKHFNIQGINAHRA----------MSDVLVNIDV-FKYLS 170

Query: 183 FGFKTNEDRFFKEEK 197
            GF T E+ F K EK
Sbjct: 171 QGFNTVEELFKKLEK 185


>gi|23012539|ref|ZP_00052599.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 218

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 26/196 (13%)

Query: 8   RKIVFDIETTGLDSKNDR--------------IIEIGAVELL---DYSKTNRTFQVFLCP 50
           R I  D ETTG                     +IEIG +EL+   +  KT +++Q  + P
Sbjct: 12  RIIAIDAETTGFQVPTPAEIRKMPKGLRLPGIVIEIGCLELVRSEEGWKTGKSWQRRIQP 71

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
            G   S  ++++HGI+   LK+ PSF  I  EF  F  +     +AH+A+ ++ F+N E 
Sbjct: 72  GG-PVSKASVEVHGISPAELKNAPSFRDILDEFEAFIGQDVL--LAHSAENEMAFLNFEY 128

Query: 111 QRINKDPLDP-----SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR-SKHGALLDS 164
            R  +   D         + T  ++R+  P     L+ LC R  +  S R   HGALLD+
Sbjct: 129 ARAGRCGFDEMIFSVDDFVCTQDLSRQFFPGVPGSLDVLCDRLWVDRSDRFEHHGALLDA 188

Query: 165 HLLSDVYIKMMVGGSQ 180
            L ++ ++KM  G  Q
Sbjct: 189 ILTAEAFMKMAGGFVQ 204


>gi|89898728|ref|YP_515838.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56]
 gi|89332100|dbj|BAE81693.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56]
          Length = 249

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 5/162 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E TGLD K DRIIE  A +   +     + +  + P+ R  S E+ ++H I+D  
Sbjct: 10  VCLDCEMTGLDVKKDRIIEFAA-KRFTFDNVIDSMETLINPD-RVISAESQRIHRISDAM 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LKD+P  S +F +   F  E +   + H+  FD+  +  E +RI +  L    IIDTL +
Sbjct: 68  LKDQPRISEVFPKIQAFLKEGDY-IVGHSVGFDLQVLTQEAERIGETFLSKYCIIDTLRL 126

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           A+    S  N L +L   +   + +   H A+ D  +  +++
Sbjct: 127 AKEYGDSPNNSLEALAVHF--NVPYDGNHRAMKDVEININIF 166


>gi|110598328|ref|ZP_01386602.1| DNA polymerase III, epsilon subunit [Chlorobium ferrooxidans DSM
           13031]
 gi|110340026|gb|EAT58527.1| DNA polymerase III, epsilon subunit [Chlorobium ferrooxidans DSM
           13031]
          Length = 219

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 91/180 (50%), Gaps = 15/180 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M RK     +V D ETTGL  +  DR IEIGAV LL+  +    FQ  + P G + S   
Sbjct: 1   MQRKLAESVVVLDFETTGLSPEYGDRAIEIGAV-LLEEGEIVGRFQKLMNP-GFRISQFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+E LK +P    + +EF +F   +N   +AHNA FD  F++ EL+R  +    
Sbjct: 59  EGYTGITNEMLKGQPCCEEVMAEFSEFIAGRNI--VAHNAAFDRRFLDFELKRAKRAY-- 114

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKMM 175
                 +L ++RR +  S N  L +L    GI    + HR    AL D+ + + +++ M+
Sbjct: 115 EGSCCCSLLVSRRIYQDSPNHRLQTLVSHAGIRQTGVFHR----ALADAEMTAQLWLSMI 170


>gi|90415683|ref|ZP_01223617.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90333006|gb|EAS48176.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 528

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 17/171 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++ D+ETTG  + + RIIEIG + +++  K    +Q F+ P      P   KL GI  
Sbjct: 23  KMVLLDLETTGGKATHHRIIEIGLL-VIEQGKVLERWQSFVDPETVL-PPFIQKLTGIAP 80

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPSRI 123
             L+  P FS +      + N++    +AHNA+FD GF+  E QRI    N  PL     
Sbjct: 81  SMLRGAPLFSEVAETLLTYLNDRT--LVAHNARFDYGFLKNEFQRIGISYNAKPL----- 133

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             ++  +R  +P   R+ L+ + KR+ + I +R  H AL D+ ++   ++K
Sbjct: 134 -CSVKFSRSLYPQFKRHGLDQIIKRFQLPIENR--HRALDDAEMIQRFFLK 181


>gi|46198514|ref|YP_004181.1| hypothetical protein TTC0206 [Thermus thermophilus HB27]
 gi|55980543|ref|YP_143840.1| DNA polymerase III subunit epsilon [Thermus thermophilus HB8]
 gi|46196136|gb|AAS80554.1| hypothetical conserved protein [Thermus thermophilus HB27]
 gi|55771956|dbj|BAD70397.1| probable DNA polymerase III epsilon subunit [Thermus thermophilus
           HB8]
          Length = 247

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 14/173 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL    D +IE+G + L    +    FQ  + P+ R  SP   +L GI  E 
Sbjct: 74  VVLDLETTGLAPGLDEVIEVGLLRLEGGRRL--PFQSLVRPS-RPPSPFVERLTGIPREA 130

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L++ PS   +  + +      +A  + HNA FD+GF+   L+ +     +P  ++D+L +
Sbjct: 131 LEEAPSLEEVLEKAYPLL--ADATLVIHNAAFDLGFLRPALEGLGYRLENP--VVDSLRL 186

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSH----LLSDVYIKMMVG 177
           ARR  P  R   L++L +   + +  R+ H AL D      ++ +VY  +  G
Sbjct: 187 ARRGLPGLRRYGLDALSEV--LELPRRTCHRALEDVERTLAVVHEVYYMLTSG 237


>gi|187935470|ref|YP_001885466.1| DNA polymerase III PolC [Clostridium botulinum B str. Eklund 17B]
 gi|187723623|gb|ACD24844.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum B str. Eklund 17B]
          Length = 1452

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEAL-KLHGITD 67
           +VFD+ETTG    ND+IIEIGAV++    K+      F C  N +++ P  + +L  I +
Sbjct: 440 VVFDLETTGFSPVNDKIIEIGAVKI----KSGEIIDEFSCFVNPQRDIPYKITQLTSIDN 495

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +KD     +I  +F +F   ++   +AHNA FD GFI    + +N     P  I+DT+
Sbjct: 496 NMVKDADVIENILPKFMEFC--EDTVIVAHNAAFDTGFIKKNCRDLNIRFDIP--ILDTV 551

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++ R  +P  +   LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 552 TLCRFLYPELKKVKLNIVAKFLGISLENH--HRAVDDAKATADILLK 596


>gi|291545334|emb|CBL18442.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp.
           SR1/5]
          Length = 1129

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 19/172 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--- 66
           +VFDIETTG  +   RIIEIGAV++     T+R F  F+ P      P   ++  +T   
Sbjct: 103 VVFDIETTGFSALTCRIIEIGAVKVEKGQITDR-FSTFVNP----EVPIPFRIEQLTSIN 157

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124
           D  + D P    +  +F +F   +    +AHNA FD+ FI  N + Q I+ D       +
Sbjct: 158 DSMVLDAPVIEEVLPKFLEFC--EGCVMVAHNADFDMSFIIENCKRQGISDD----FTYV 211

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+ +AR   P+ +R  L+++ K  G+++ H   H A+ D+   ++++++ +
Sbjct: 212 DTVGMARFLLPALNRFKLDTVAKAVGVSLDHH--HRAVDDAACTAEIFVRFV 261


>gi|153810942|ref|ZP_01963610.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174]
 gi|149832830|gb|EDM87913.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174]
          Length = 1439

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 92/170 (54%), Gaps = 15/170 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTG      +IIEIGAV + +   T+R F  F+ P  +   P  + +L  I D 
Sbjct: 414 VVFDIETTGFSPLTCQIIEIGAVRVENGVITDR-FSTFVNP--KVPIPYRIEQLTSINDS 470

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDT 126
            + D P   +I  +F +F     A  +AHNA FD+ FI  N + Q + ++       +DT
Sbjct: 471 MVMDAPDIQTILPQFLEFC--AGAVMVAHNADFDMSFIIENCKRQGLPQE----YTYVDT 524

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +AR   P+ +R  L+++ K  G+++ H   H A+ D+   ++++++ +
Sbjct: 525 VGMARFLLPALNRFKLDTVAKAVGVSLDHH--HRAVDDAACTAEIFVRFV 572


>gi|89902537|ref|YP_525008.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
 gi|89347274|gb|ABD71477.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
          Length = 722

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 94/168 (55%), Gaps = 10/168 (5%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGL+ ++ D II+IGA  +++     + +F+  + P+ R  S  ++++HGIT +
Sbjct: 534 VFDTETTGLNPAEGDEIIQIGAARIVNKKILRQESFEQLVNPD-RLISAASVQIHGITQD 592

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P    +   F  F   Q+   +AHNA FD+ F+  +          P  ++DTL 
Sbjct: 593 RVIGQPRIGEVLPAFHAF--AQDTVLVAHNAAFDMKFLQLKEAATGLAFHQP--VLDTLL 648

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++   HP+  +  L ++ +R+ IT+  R  H AL D+ + ++V+++++
Sbjct: 649 LSAVVHPNQESHRLEAIAERFNITVLGR--HTALGDAMVTAEVWLRLI 694


>gi|332525056|ref|ZP_08401237.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
 gi|332108346|gb|EGJ09570.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
          Length = 645

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 93/169 (55%), Gaps = 12/169 (7%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPE-ALKLHGITD 67
           VFD ETTGL+ S  D II+IGA  ++    + + +F+  + P   +  PE  + +HGIT 
Sbjct: 457 VFDTETTGLEPSAGDEIIQIGATRIVAGKLRRHESFEQLVDPQ--RAIPERTVAIHGITP 514

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +  +P+   +      F +  +   +AHNA FD+ F+  + +R      D   ++DTL
Sbjct: 515 AMVAGQPTIREVLPALHAFAH--DTVLVAHNAAFDLRFLELK-ERAAGVRFDMP-VLDTL 570

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +++  HP+  R+ L ++ +R G+ +  R  H AL D+ + ++V++KM+
Sbjct: 571 LLSQVLHPNQERHSLEAIAERLGVPVLGR--HTALGDAIVTAEVFLKMI 617


>gi|134098272|ref|YP_001103933.1| hypothetical protein SACE_1689 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910895|emb|CAM01008.1| DNA polymerase III, epsilon subunit [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 572

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 21/211 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N++  +V D+ETTG  +  D + EIGAV++         FQ  + P  R   P  + + G
Sbjct: 21  NEVTFVVVDLETTGGSNAQDAVTEIGAVKVRGGEVVGE-FQTLVDPE-RDIPPSVVTITG 78

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+  ++D P   S+   F +F   + +  +AHNA FD GF+ A  +R+      P +++
Sbjct: 79  ITEAMVRDAPRLDSVLPAFLEFC--RGSVLVAHNAPFDTGFLRAGCERLGLRWPKP-KVV 135

Query: 125 DTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            T+ +ARR     + P+ R  L +L    G        H AL D+    DV   ++    
Sbjct: 136 CTVRLARRVLTRDETPNYR--LGTLAGVLGARTE--PVHRALDDARATVDVLHALLERLG 191

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
            I  G +T ED         +P+++ L+R K
Sbjct: 192 PI--GVRTLEDLLGH-----LPDVTPLQRRK 215


>gi|219669053|ref|YP_002459488.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium
           hafniense DCB-2]
 gi|219539313|gb|ACL21052.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium
           hafniense DCB-2]
          Length = 929

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 60/182 (32%), Positives = 90/182 (49%), Gaps = 13/182 (7%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64
           K + +V DIETTG D  ND IIE  A+  ++  +    F V + P  R+  PE  L+L G
Sbjct: 3   KGKIVVIDIETTGFDIYNDEIIEFAAL-CIEEGEEAEAFSVLISP--RRQVPERILRLTG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ E LK   S  +   +  D F  Q+A  + HN +FD+GF+   L    ++ L      
Sbjct: 60  ISPEELKQAGSLQAYRDKILDLF--QDAIIVGHNVEFDLGFLEQALTIHFENTL-----W 112

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           DTL IAR  +P+  +  L  L K  G+T   ++ H AL D+    ++       G  ++ 
Sbjct: 113 DTLEIARILYPNMPKYKLGDLTKSLGLTPLEKA-HRALFDARAAWELLQACWEKGLTLDL 171

Query: 184 GF 185
           GF
Sbjct: 172 GF 173


>gi|269956916|ref|YP_003326705.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305597|gb|ACZ31147.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 547

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 17/183 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL  + DR+IE+  + L    +T   +   L P   + +  A  +HGITD  +
Sbjct: 51  VVDVETTGLSPRYDRVIEVAILRLDTNGRTVDEWSTRLNP---QRTVGATWIHGITDADV 107

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              PSF+ + ++         A ++ HNA+FD GF+ AEL R   D  +P+ I  T + +
Sbjct: 108 AHAPSFADVAAQVAQRLT--GAVFVGHNARFDAGFVLAELTRAGWDAPEPT-IWCTQAAS 164

Query: 131 RRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
               P +S   L  +    GI+++H   H AL D+   + +  + +        G  T  
Sbjct: 165 HHWLPDASSRRLVDVAAAAGISLTH--AHSALGDARATAAMLTRYI--------GASTGV 214

Query: 190 DRF 192
           DR 
Sbjct: 215 DRL 217


>gi|194015490|ref|ZP_03054106.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061]
 gi|194012894|gb|EDW22460.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061]
          Length = 240

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 17/168 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ETTGLD K D+IIEIGA+++       ++ + +R   +     GR        L 
Sbjct: 7   VVLDLETTGLDHKKDQIIEIGAIKIRLGGRVREFEEVSRFHTMVALEEGRDLPEFITNLT 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT+E L+D P       E  +F    +A  +A NA FD+ F       I++  ++P R 
Sbjct: 67  GITEEDLEDAPEEWDALDELQNFIG--DAIVVAQNAPFDLSF-------ISRGDIEPERF 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             T ++AR   P     L  + KR GI++     H AL D     +V+
Sbjct: 118 YCTRAMARFVEPELSASLKDVTKRIGISLD--GHHRALNDVEATIEVF 163


>gi|319638605|ref|ZP_07993367.1| DNA polymerase III subunit [Neisseria mucosa C102]
 gi|317400354|gb|EFV81013.1| DNA polymerase III subunit [Neisseria mucosa C102]
          Length = 463

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           +V D+ETTG +   DRI E+  V       T+    V  C    ++ PE   +L GI DE
Sbjct: 22  VVVDLETTGGNFYQDRITEVALVRFEQGRATHYEQLVNPC----RSIPEFVARLTGIHDE 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+ P F+ I ++       Q A  +AHN++FD  F+  E  RI+ D   PS  + T+ 
Sbjct: 78  TVKNAPVFADIAADLLPLL--QGAVVVAHNSRFDYTFLRHEFARIHTDFAAPS--LCTVQ 133

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++RR +P   ++ L+S+ +R GI  ++R  H A+ D   L D Y+++
Sbjct: 134 LSRRLYPEFYKHSLDSIIERTGIQTANR--HRAMTDVVALCD-YLEL 177


>gi|295091739|emb|CBK77846.1| DNA polymerase III, alpha chain, Gram-positive type [Clostridium
           cf. saccharolyticum K10]
          Length = 1037

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 95/172 (55%), Gaps = 19/172 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66
           +VFDIETTG     +RIIEIGAV++ +    +R F  F+ P      P   E  KL  I+
Sbjct: 198 VVFDIETTGFSPLKNRIIEIGAVKVENGKIVDR-FSTFVNP----EVPIPFEIEKLTSIS 252

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124
           D  +   P    +  +F +F +  +A  +AHNA FD+ FI  NA +Q  + +P     ++
Sbjct: 253 DNMVLGAPKIEEVLPKFLEFCS--DAVMVAHNASFDMSFIRHNAMIQGKSFEP----TVL 306

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+S+AR   P+ +R  L+++ K   + IS  + H A+ D+   +++++K +
Sbjct: 307 DTVSMARFLLPNLNRFKLDTVAKE--LRISLENHHRAVDDAGATAEIFVKFV 356


>gi|260426760|ref|ZP_05780739.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
 gi|260421252|gb|EEX14503.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
          Length = 468

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 5/166 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD ETTGL    D +++IGAV +L+           L   G      + ++H +TD  +
Sbjct: 278 VFDTETTGLLPHKDEVVQIGAVRVLNGRIVPGEVLDLLVDPGIPIPASSSRVHKVTDAMV 337

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             KP        F  F   + +  +AHNA FD+ F+     R+  +   P  I+DT+ ++
Sbjct: 338 AGKPDIGEAGRRFHRF--AKGSVIVAHNAPFDMAFLRRHRDRMGVEWDHP--ILDTVLLS 393

Query: 131 RRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                +S  + L++LC+R G+ I    +H AL D++  + V + M+
Sbjct: 394 AVLFGASETHTLDALCQRLGVEIPQALRHTALGDANATAQVLVMML 439


>gi|302670324|ref|YP_003830284.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316]
 gi|302394797|gb|ADL33702.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316]
          Length = 1529

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTG     +RIIEIGAV++ +     R F  F+ P  +   P  + KL  ITDE
Sbjct: 499 VVFDIETTGFSPIKNRIIEIGAVKIRNGEILER-FSEFINP--QVPIPYRIEKLTSITDE 555

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   I  +F +F   ++A  + HN  FD+ FIN   Q +  D +D +  +DTL 
Sbjct: 556 MVMDAPTREVIIPKFVEFC--KDAVLVGHNVAFDISFINQNCQDLGID-VDYTT-VDTLW 611

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   P  +++ L+++ K   + + H   H A+ D+   + ++ K +
Sbjct: 612 LARYFFPLQAKHTLDAVAKTLNVVLDHH--HRAVDDAECTALIFNKFI 657


>gi|239827467|ref|YP_002950091.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus sp. WCH70]
 gi|239807760|gb|ACS24825.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           WCH70]
          Length = 921

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 9/180 (5%)

Query: 6   KMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K R ++ D+ETTG +  K DRII++G V +++  K    F  F  P  R   P   +L  
Sbjct: 2   KDRFVIIDLETTGNVPKKGDRIIQLGMV-VIENGKIVDRFSSFFNPE-RDIPPFVQQLTN 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT++ + D PSF+   ++  D    Q + ++AHN  FD+ F+  EL      P      I
Sbjct: 60  ITEQMVADAPSFAEEAAKVADML--QQSYFVAHNVSFDLQFLQEELHMAGLPPFS-GPTI 116

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           DT+ +AR   P++ +  L  L K+  + I H   H A  D+ + + ++I ++    Q+ F
Sbjct: 117 DTVELARIVFPTAESYKLGDLAKQ--LHIDHDQPHQADSDAEVTAKLFIALLNRLRQLPF 174


>gi|21673865|ref|NP_661930.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS]
 gi|21647000|gb|AAM72272.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS]
          Length = 232

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 18/185 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLH 63
           +++R ++FD ET+G D   DRI+ IGAV +   +     +F+V L         +A+ +H
Sbjct: 41  DELRFVIFDTETSGFDLVKDRILSIGAVSMKGSTIDIADSFEVLLRQEA-IGGKDAVSVH 99

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSR 122
           GI    L            F D+    N   +AH+A FD+  +N  L QR     L+ + 
Sbjct: 100 GILKRDLTQGMEEGEAVCRFLDYLG--NGVIVAHHADFDIAMVNRVLSQRYGIKLLNEA- 156

Query: 123 IIDTLSIARR---------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +DT S A+R          H S    L++LC RYGI +  R  H +  D++L + ++ +
Sbjct: 157 -LDTASFAKRLEKGPYYNLAHKSGEYRLDNLCARYGICLYDR--HTSAGDAYLTAQLFQR 213

Query: 174 MMVGG 178
           ++  G
Sbjct: 214 LLAVG 218


>gi|148377333|ref|YP_001256209.1| DNA polymerase III PolC [Mycoplasma agalactiae PG2]
 gi|148291379|emb|CAL58763.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae PG2]
          Length = 1459

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 6/168 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FDIETTGL  K   IIE GAV++    K     Q F+ P  +  +    +L GIT + 
Sbjct: 426 VSFDIETTGLSPKFHEIIEFGAVDINQDLKVGEVTQFFIKPQAKIGA-FTTELTGITQQM 484

Query: 70  LKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L  +  S        +D  + + A  IAHNAKFD  F+  +  R+N  P     +IDTL 
Sbjct: 485 LDSEGLSIKDGLQRIYDCLDGKVA--IAHNAKFDFNFLKEQF-RLNNVPFPNVTVIDTLI 541

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +R   P+  R+ L  +  R G+       H    D+ +L++V++ ++
Sbjct: 542 ASRIGFPNYKRHKLEDVTSRLGVVYDPNVAHRGDYDAKVLANVWVNII 589


>gi|153820610|ref|ZP_01973277.1| DNA polymerase III epsilon subunit [Vibrio cholerae NCTC 8457]
 gi|126508846|gb|EAZ71440.1| DNA polymerase III epsilon subunit [Vibrio cholerae NCTC 8457]
          Length = 136

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 47/65 (72%)

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 17  DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 76

Query: 179 SQINF 183
           + + F
Sbjct: 77  TSLQF 81


>gi|225017584|ref|ZP_03706776.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum
           DSM 5476]
 gi|224949644|gb|EEG30853.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum
           DSM 5476]
          Length = 865

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+E+TG D+ +D II+I AV + +  +  R+F+  L P+      EA  +H  +D  
Sbjct: 500 VVFDVESTGTDTSSDEIIQIAAVRIDETGRVLRSFEQLLHPSKPVGQSEA--VHHFSDAL 557

Query: 70  LKDKPSF-SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L ++      + +EF  F   + A  + HN  FD+  + +EL R+   P +     DTL 
Sbjct: 558 LAERGGEPPQVLAEFCSFV--RGAVVVGHNVGFDLTILASELSRLGLPPAEYEEYYDTLD 615

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +ARR +P   N  L +L K     +  +S H A+ D     DV + +
Sbjct: 616 LARRFYPDLPNHKLETLSKLLDTEV--KSSHDAMDDILATKDVLLHL 660


>gi|159046099|ref|YP_001534893.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
 gi|157913859|gb|ABV95292.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
          Length = 485

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 91/173 (52%), Gaps = 10/173 (5%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALKLH 63
           ++ ++FD ETTGL   + D + +I A  +++  K  +T  F   + P GR     A  +H
Sbjct: 289 LKYVIFDTETTGLLPERGDEVCQIAACRVVN-GKMVKTEMFDTLVNP-GRPIPLSATNIH 346

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD  + D P F +    F  F +   A  IAHNA FD+ F   +   I      P  +
Sbjct: 347 GITDAMVADAPDFLTAGRAFHGFAD--GAVLIAHNAPFDMAFFYRKQAEIGARFDHP--V 402

Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DT+ ++   +  + ++ L++L +R  +TI   ++H AL D+   ++V++K++
Sbjct: 403 LDTVLLSAVIYGQTEQHSLDALAERLNVTIPEEARHTALGDALATTEVFLKLL 455


>gi|217077387|ref|YP_002335105.1| DNA polymerase III PolC [Thermosipho africanus TCF52B]
 gi|217037242|gb|ACJ75764.1| DNA polymerase III, alpha subunit, Gram-positive type [Thermosipho
           africanus TCF52B]
          Length = 1365

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 7/122 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTG +++ D IIE GAV+  D  K   TF+ F+ PN   N     KL GIT++ L
Sbjct: 350 VFDLETTGTNARFDEIIEFGAVKYKD-GKIIDTFKSFVKPNKDIND-FTQKLTGITNDML 407

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLSI 129
           KD P    +  +F +F   +    +AHNA FD GFI    +++ +KD + P   +DTL +
Sbjct: 408 KDAPGIEEVVPKFLEFI--EGTVLVAHNADFDYGFIREVYRKMYDKDLIMPY--LDTLKL 463

Query: 130 AR 131
           ++
Sbjct: 464 SK 465


>gi|118580761|ref|YP_902011.1| DNA-directed DNA polymerase [Pelobacter propionicus DSM 2379]
 gi|118503471|gb|ABK99953.1| DNA-directed DNA polymerase [Pelobacter propionicus DSM 2379]
          Length = 170

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 9/167 (5%)

Query: 11  VFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ET+GL  +   R+IE+ AV LL   K     +  L  N   + P A ++HGI  E 
Sbjct: 7   VVDVETSGLSPRGGGRVIEVAAV-LLREGKVVGELESLLRVNCSIH-PAAARVHGIGWEM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+  P    ++  F  F   +    +AHNA FD+GFI  EL  +   PL  +R I TL +
Sbjct: 65  LRHAPEPEDVWRRFLSFVGRR--PLVAHNAPFDMGFIRHELALLGL-PLA-NRSICTLRM 120

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSK-HGALLDSHLLSDVYIKM 174
           ARR+ P  + + L +L +    +I    + H AL D+ L + V++ M
Sbjct: 121 ARRRFPELASHRLEALARHLLGSIPEDCRLHRALGDARLAARVWLAM 167


>gi|269219422|ref|ZP_06163276.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211118|gb|EEZ77458.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 206

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+ETTGL    DRI+EIG V L +  +    +Q  + P        A+ +HG+T
Sbjct: 1   MGYAVVDVETTGLSPVRDRIVEIGVVLLDESGEPEGEWQSLVNP---LRGMGAVFVHGLT 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           D  + D P+ + +  +    F+ +    +AHNA FDVGF+NA   R       P    + 
Sbjct: 58  DADVADAPTLADLLPQIRGLFSGR--ALVAHNATFDVGFLNASFARAGYGMHVPREATVC 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           T+ +++   P  R+ L +  +R G+  + R  H AL D+H
Sbjct: 116 TMELSKIYLPPGRHGLAAAAERAGVATAKR--HRALADAH 153


>gi|30171791|gb|AAP20774.1| DNA polymerase III alpha subunit [Peanut witches'-broom
           phytoplasma]
          Length = 1492

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 9/172 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKLHGITDE 68
           +V DIETTG     DRII I AV++ +  K    F   + P    K S    +L  I+DE
Sbjct: 406 VVLDIETTGFSKTRDRIISIAAVKIQN-GKIIEYFDELINPGKDIKISNLIQRLTNISDE 464

Query: 69  FLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126
            L +KP    I S+F DF  +  N   +AHNA FD+ F+    + I    PL P  +IDT
Sbjct: 465 ILLNKPHIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPLLP--VIDT 522

Query: 127 LSIARRKHPSSRN--DLNSLCKRYGITI-SHRSKHGALLDSHLLSDVYIKMM 175
           L++A++          L  + K + I + S    H AL D+   + ++++M+
Sbjct: 523 LTLAQKYFNKILKYFSLEKIVKSFKIKLDSEGQYHNALFDARATALIFLEML 574


>gi|254229191|ref|ZP_04922610.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp.
           Ex25]
 gi|262395541|ref|YP_003287394.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25]
 gi|151938276|gb|EDN57115.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp.
           Ex25]
 gi|262339135|gb|ACY52929.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25]
          Length = 204

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 13/172 (7%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV+L+D    + +FQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPTLGDRAIEIGAVKLVDGEVVD-SFQRLMNP-GFRVSSFIENYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RIN           +L 
Sbjct: 66  MLRSAPSCEEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCGY--SGEFACSLL 121

Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +ARR     PS +  L  L  RY    +    H AL D+ + + +++ M+ G
Sbjct: 122 VARRLIQDAPSHK--LGELV-RYKNIDNDGVFHRALADAQMTAKLWLLMVEG 170


>gi|313678200|ref|YP_004055940.1| DNA polymerase III subunit alpha [Mycoplasma bovis PG45]
 gi|312950476|gb|ADR25071.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           bovis PG45]
          Length = 1458

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 6/168 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FDIETTGL  K   IIE GAV++    K  +T Q F+ P  +  S    +L GIT + 
Sbjct: 425 VSFDIETTGLSPKFHEIIEFGAVDINQDLKVGKTTQFFIKPKDKIGS-FTTELTGITQQM 483

Query: 70  LKDKPSF-SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L  K  +      + +D  + + A  IAHNAKFD  F+  +  R+N        +IDTL 
Sbjct: 484 LDSKGLYIKEGLEKIYDCLDGKIA--IAHNAKFDFNFLKEQF-RLNNMQFPRVTVIDTLV 540

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +R   P   R+ L  +  R G+       H    D+ +L++V++ ++
Sbjct: 541 ASRIGFPGYKRHKLEDVASRLGVVYDPNVAHRGDYDAKVLANVWVNII 588


>gi|313672047|ref|YP_004050158.1| DNA polymerase iii, epsilon subunit [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312938803|gb|ADR17995.1| DNA polymerase III, epsilon subunit [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 201

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 14/172 (8%)

Query: 10  IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---KLHGI 65
           +VFD+ETTGL+  N D+IIE+GA       K    F++   P      P+     ++HGI
Sbjct: 18  VVFDLETTGLNPDNGDQIIEMGAF------KIEEGFKLVRDPFHTMVKPDIFIPNEIHGI 71

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+  LK+ P   +   +F DF   + +  +AH A  D+ F+ A ++    D      +ID
Sbjct: 72  TEMELKNAPDICTALYDFIDF--SRGSVLVAHKASKDIAFLRAAMREYLIDDSFDFLVID 129

Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSK-HGALLDSHLLSDVYIKMM 175
           T+  ++R +P  + ++L+ L +++ I+I+ + K H A+ D+   + +++KM+
Sbjct: 130 TIKFSQRLYPDFKYHNLDYLIEKHHISINSKFKRHRAIYDAEATAKIFLKMI 181


>gi|271965325|ref|YP_003339521.1| DNA polymerase III subunit epsilon-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270508500|gb|ACZ86778.1| DNA polymerase III epsilon subunit and related 3'-5'
           exonuclease-like protein [Streptosporangium roseum DSM
           43021]
          Length = 407

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 7/144 (4%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTGL  S NDR+IEIG V L    +    +   + P GR   P+   +HGIT   
Sbjct: 12  VIDLETTGLRPSWNDRVIEIGIVHLDLSGEVTGEWATLVNP-GRDLGPQ--HIHGITAAD 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128
           ++  P+F  I     +  + +     AHN  FD GF++ E  R+  D PLD +  + T++
Sbjct: 69  IRHAPAFGEIAGAVAERLDGRVVA--AHNLPFDAGFLSHEFGRLGLDTPLDHTAGVCTMA 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITI 152
            + +  P +   L + C R G+++
Sbjct: 127 WSAQFLPGAPRSLAACCARAGVSL 150


>gi|257463693|ref|ZP_05628083.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|317061240|ref|ZP_07925725.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|313686916|gb|EFS23751.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
          Length = 1450

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 88/164 (53%), Gaps = 8/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+ET G +S   +IIEIGAV++++    +R F   + P G+      + +  ITD  
Sbjct: 425 VVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDR-FSQLINP-GQSIPQNIVDVTNITDSM 482

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++++P    +   F +F   + +  +AHNA FD+G++  + ++      +P+  IDTL +
Sbjct: 483 VQNEPKLEEVLPNFLEFI--RGSILVAHNADFDIGYLKQQCKKYGYSDFNPA-FIDTLQM 539

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           A+  +P  +   L  L K+ G+ + +   H A+ D     ++++
Sbjct: 540 AKDLYPELKQFGLGPLNKKLGLYLENH--HRAVDDCQATGNMFL 581


>gi|89894618|ref|YP_518105.1| hypothetical protein DSY1872 [Desulfitobacterium hafniense Y51]
 gi|89334066|dbj|BAE83661.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 929

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 60/182 (32%), Positives = 90/182 (49%), Gaps = 13/182 (7%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64
           K + +V DIETTG D  ND IIE  A+  ++  +    F V + P  R+  PE  L+L G
Sbjct: 3   KGKIVVIDIETTGFDIYNDEIIEFAAL-CIEEGEEAEAFSVLISP--RRQVPERILRLTG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ E LK   S  +   +  D F  Q+A  + HN +FD+GF+   L    ++ L      
Sbjct: 60  ISPEELKQAGSLHAYRDKILDLF--QDAIIVGHNVEFDLGFLEQALTIHFENTL-----W 112

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           DTL IAR  +P+  +  L  L K  G+T   ++ H AL D+    ++       G  ++ 
Sbjct: 113 DTLEIARILYPNMPKYKLGDLTKSLGLTPLEKA-HRALFDARAAWELLQACWEKGLTLDL 171

Query: 184 GF 185
           GF
Sbjct: 172 GF 173


>gi|219683338|ref|YP_002469721.1| DNA polymerase III polC-type [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|219620988|gb|ACL29145.1| DNA polymerase III polC-type [Bifidobacterium animalis subsp.
           lactis AD011]
          Length = 123

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 61/107 (57%), Gaps = 4/107 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D+ETTG  ++NDRI EIGAV++ D    +R  Q  L   GR+ S    +L GI+
Sbjct: 9   MNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDRFTQ--LVNPGRRVSARITELTGIS 66

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           +E L+D+P    I  +F  +   +N   + HN KFD+ F+ A  +R+
Sbjct: 67  NEMLEDQPVIEDILGDFIHW--TENDRLVGHNTKFDLSFLIANAERV 111


>gi|27367395|ref|NP_762922.1| DNA polymerase III subunit alpha [Vibrio vulnificus CMCP6]
 gi|27358964|gb|AAO07912.1| DNA polymerase III alpha subunit [Vibrio vulnificus CMCP6]
          Length = 204

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 89/173 (51%), Gaps = 19/173 (10%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV+++D    + +FQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPNLGDRAIEIGAVKIVDGEVVD-SFQQLMNP-GFRVSSFIESYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RIN D         +L 
Sbjct: 66  MLRSAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCDY--SGEFACSLL 121

Query: 129 IARR---KHPSSRNDLNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKMM 175
           +ARR     PS +  L  L +   I    I HR    AL D+ + + +++ M+
Sbjct: 122 VARRLIQDAPSHK--LGELVRYKNIDNDGIFHR----ALADAQMTAKLWLLMV 168


>gi|312143668|ref|YP_003995114.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904319|gb|ADQ14760.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
          Length = 1401

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 89/169 (52%), Gaps = 10/169 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFD+ETTGL+     IIEIGAV++    K    F+ F+  +  KN P  + ++ GI   
Sbjct: 389 VVFDLETTGLNPSQHDIIEIGAVKIKAGEKIAE-FETFI--DIDKNVPAKITEITGINTS 445

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P   +    F DF  +     +AHNA FD GF+   LQ++  +  + + ++DTL+
Sbjct: 446 MLTGAPKLKAAIERFIDFIGD--GVLVAHNADFDYGFLRTALQKLEINRKEYT-VLDTLA 502

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++R     S+N  LN+L + + + +     H AL D+   +++  K++ 
Sbjct: 503 LSRALIKDSKNYKLNTLAEYFSVELDDH--HRALADADATAEILKKLLA 549


>gi|255321503|ref|ZP_05362661.1| mature parasite-infected erythrocyte surface antigen [Campylobacter
           showae RM3277]
 gi|255301359|gb|EET80618.1| mature parasite-infected erythrocyte surface antigen [Campylobacter
           showae RM3277]
          Length = 311

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 15/173 (8%)

Query: 3   RKNKMRKIVF---DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPE 58
           R+N+++  +F   DIET+G    + +IIEIGA++L +     + F+ F+  P   +N  E
Sbjct: 64  RRNEIKDQIFCVVDIETSG-GINSGQIIEIGALKLQNGEIIGK-FETFVYAPYVPENISE 121

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
              L GIT E LK+ PS + +  +F  F  +  + ++AHN +FD GFI+A L+ +    L
Sbjct: 122 ---LTGITAEHLKNAPSLAFVMEQFKVFLGQ--SVFVAHNVRFDYGFISATLEALGYGEL 176

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +R + T+ +ARR   S +  L +L +  GI  +H   H AL D+   ++++
Sbjct: 177 -LNRKLCTIDLARRTIASPKYGLGTLKEILGIDNTH---HRALSDAIAAAEIF 225


>gi|238924126|ref|YP_002937642.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
 gi|238875801|gb|ACR75508.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
          Length = 1510

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 94/174 (54%), Gaps = 19/174 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT- 66
           + +VFDIETTG   + ++IIEIGAV+++     +R +  F+ P      P   ++  +T 
Sbjct: 479 KYVVFDIETTGFSPEKNKIIEIGAVKVIGGEIVDR-YSTFINP----EVPIPFRIEELTS 533

Query: 67  --DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSR 122
             D+ +   P+   I  +F +F   ++   +AHNA FD+ FI  N  L  +  +P     
Sbjct: 534 IRDDMVITSPTVDVILPQFMEFC--KDCIMVAHNADFDMSFIKRNCALLGMECNP----T 587

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           I+DT+++AR   P  +R  L+++ K   I++ H   H A+ D+   +++++K +
Sbjct: 588 IVDTVALARVLLPQLNRFKLDTVAKALNISLDHH--HRAVDDAACTAEIFVKFI 639


>gi|254360642|ref|ZP_04976791.1| exoribonuclease T [Mannheimia haemolytica PHL213]
 gi|153091182|gb|EDN73187.1| exoribonuclease T [Mannheimia haemolytica PHL213]
          Length = 215

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET GL+++ D ++E+ A+ L +D   Y   ++     + P  G   +PE+LK +G
Sbjct: 23  VVIDVETAGLNAQTDALLELAAITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNG 82

Query: 65  I-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQRIN-- 114
           I  D  L+   + +    E +    +       Q A  +AHNA FD GF+ A ++RIN  
Sbjct: 83  IDIDNPLRGAVAENIAIPEMFKMVRKAMKEQGCQRAVIVAHNAAFDQGFLQAAIKRINAK 142

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +DP  P  + DT ++A   +   +  L   C+   I    +  H AL D+   ++++  M
Sbjct: 143 RDPFHPFAMFDTATLAGFMY--GQTVLVKACQVAKIPFDGKQAHSALYDTERTAELFCAM 200

Query: 175 M 175
           +
Sbjct: 201 V 201


>gi|219850553|ref|YP_002464986.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM
           9485]
 gi|219544812|gb|ACL26550.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM
           9485]
          Length = 233

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 17/176 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFL-CPNGRKNSPEALKLHGITDE 68
           V D+ETTGLD ++D +I IGAV + +      +T+   +  P GR+ S E++++H +T E
Sbjct: 40  VIDVETTGLDPRHDALIAIGAVNVENGRVLLKQTWHSLIRPPPGREPSVESIRVHHLTPE 99

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ----RINKDPLDPSRII 124
            L+D P  + + +E       +    + H A+ DV FINA L+    R+ +  LD +R+ 
Sbjct: 100 ELRDAPPPAEVLAELLRLIAGRVL--VVHVAEIDVRFINAALKPFGGRLRRPILDTARLA 157

Query: 125 DTLSI-------ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            TL +         R  P+   +L  L    G+ I   ++H AL D+   + ++I 
Sbjct: 158 MTLHLNAQWLGELPRDMPAPAVELRGLTGALGLPIY--AQHNALNDAVTTAQLFIA 211


>gi|56478059|ref|YP_159648.1| excinuclease Cho [Aromatoleum aromaticum EbN1]
 gi|56314102|emb|CAI08747.1| Excinuclease Cho, similar to DNA polymerase III epsilon subunit
           family [Aromatoleum aromaticum EbN1]
          Length = 478

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 92/157 (58%), Gaps = 12/157 (7%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           DIETTG  + +D I EI  +E+ +     R +   + P+ R   P+ + ++ GI++  + 
Sbjct: 22  DIETTGTTASHDSITEIAIIEIGE--DGVREWSSLVRPDSR--IPDYIERMTGISNHMVA 77

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D P+F+ +    +D  +E+   ++AHNA+FD GFI A  +R+  D   P +++ T+ ++R
Sbjct: 78  DAPTFAELAETVFDRLHERV--FVAHNARFDHGFIRAAFRRLGVD-FRP-KVLCTVRLSR 133

Query: 132 RKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           R +P   R++L++L  R+G+ +   ++H AL D+  L
Sbjct: 134 RLYPQERRHNLDALIARHGLEVE--AQHRALGDAQAL 168


>gi|160934103|ref|ZP_02081490.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753]
 gi|156866776|gb|EDO60148.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753]
          Length = 1451

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD+ETTGL + NDRI EIGAV + +   T+  F  F+ P  R    +  +L GI D  
Sbjct: 435 ISFDLETTGLSAANDRITEIGAVRIHNGEITD-VFNTFVNPE-RPIPAKITELTGINDSM 492

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P        F +F  ++    +AHNA FD  FI A   R N D    +  +DT+ +
Sbjct: 493 VIDAPKEKEAVEAFLEFCGKEPV-LLAHNAPFDTSFIQAVAARHNLD--FSNTYLDTVPM 549

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R   P  +N  L+++ K   + ++  + H A  D+ +L+++++ ++
Sbjct: 550 CRAMLPGIKNHKLDTVAKH--LKLAPFNHHRASDDAMVLANIFLVLL 594


>gi|238916793|ref|YP_002930310.1| DNA polymerase III subunit alpha, the Gram-positive type
           [Eubacterium eligens ATCC 27750]
 gi|238872153|gb|ACR71863.1| DNA polymerase III subunit alpha, the Gram-positive type
           [Eubacterium eligens ATCC 27750]
          Length = 1513

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 19/172 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--- 66
           +VFD+ETTG  ++ DRIIEIGAV++ +    +R F  F+ P      P   ++  +T   
Sbjct: 474 VVFDLETTGFSAEVDRIIEIGAVKVCNGEIVDR-FSTFVNP----EIPIPFRIETLTHIN 528

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124
           D+ + + P    I  EF +F   + A  +AHNA+FD  FI   AE   IN D    + II
Sbjct: 529 DQMVMNAPKIEEILPEFLEFC--EGAVMVAHNAEFDTSFIINKAEKIGINVD----TTII 582

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+ +A+   P+  N  L++L K   + +   S H A+ D+   +D+++KM+
Sbjct: 583 DTVLLAQFLMPNLHNYKLDTLTKHLNVVL--ESHHRAVDDAAATADIFVKMI 632


>gi|91225444|ref|ZP_01260566.1| hypothetical protein V12G01_08955 [Vibrio alginolyticus 12G01]
 gi|91189807|gb|EAS76080.1| hypothetical protein V12G01_08955 [Vibrio alginolyticus 12G01]
          Length = 204

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 13/172 (7%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV+L++    + +FQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPTLGDRAIEIGAVKLVNGEVVD-SFQQLMNP-GFRVSSFIENYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RIN           +L 
Sbjct: 66  MLRSAPSCEEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCGY--SGEFACSLL 121

Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +ARR   + PS +  L  L  RY    +    H AL D+ + + +++ M+ G
Sbjct: 122 VARRLIQEAPSHK--LGELV-RYKNIDNDGVFHRALADAQMTAKLWLLMVEG 170


>gi|269963944|ref|ZP_06178254.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831319|gb|EEZ85468.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 204

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 13/170 (7%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV+++D  +   +FQ  + P G + SP      GIT+ 
Sbjct: 8   VVLDFETTGLSPNMGDRAIEIGAVKIVD-GEVVDSFQQLMNP-GFRVSPFIEGYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RI  D         +L 
Sbjct: 66  MLRTAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERI--DCGYSGEFACSLL 121

Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +ARR     PS +  L  L  RY    +    H AL D+ + + +++ M+
Sbjct: 122 VARRLIQDAPSHK--LGELV-RYKNIENDGVFHRALADAQVTAKLWLLMV 168


>gi|241759673|ref|ZP_04757773.1| DNA polymerase III subunit [Neisseria flavescens SK114]
 gi|241319681|gb|EER56077.1| DNA polymerase III subunit [Neisseria flavescens SK114]
          Length = 463

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 13/170 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           +V D+ETTG +S  DRI E+  V      +  RT       N  ++ PE   +L  I DE
Sbjct: 22  VVVDLETTGGNSYQDRITEVALVRF----EQGRTTHYEQLVNPCRSIPEFVARLTEIHDE 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+ P F+ I  +       Q A  +AHN++FD  F+  E  RI+ D   PS  + T+ 
Sbjct: 78  TVKNAPVFADIAGDLLPLL--QGAVVVAHNSRFDYTFLRHEFARIHTDFAAPS--LCTVQ 133

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           ++RR +P   ++ L+S+ +R GI  ++R  H A+ D   L D Y+++ + 
Sbjct: 134 LSRRLYPEFYKHSLDSIIERTGIQTANR--HRAMTDVVALCD-YLELSLA 180


>gi|15614254|ref|NP_242557.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus halodurans C-125]
 gi|10174308|dbj|BAB05410.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
          Length = 942

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 9/164 (5%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V DIETTG   ++ DRIIEIGAV + D  +   +F   + P  R   P   +L GI+
Sbjct: 4   RFVVIDIETTGQSVAQGDRIIEIGAVVIED-EEAVESFCTLVNPE-RSIPPFIEELTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE +K  P+F     E       +   ++AHN  FD+ F+   L+     PL    IIDT
Sbjct: 62  DEMVKGAPTFHQCIPELMSML--EGGVFVAHNVHFDLSFLQKLLEHEGYGPL-LVPIIDT 118

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R   P+  +  L++L ++ G  + H + H A  D+ + +D
Sbjct: 119 VELSRILLPTEESYKLSALTEQLG--LEHENPHRADSDAKVTAD 160


>gi|288554371|ref|YP_003426306.1| hypothetical protein BpOF4_06780 [Bacillus pseudofirmus OF4]
 gi|288545531|gb|ADC49414.1| hypothetical protein BpOF4_06780 [Bacillus pseudofirmus OF4]
          Length = 220

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 9/169 (5%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +FD ETTG   +  DR+IEI  V +       +TFQ F+ P+  +  PE +  L GI+ E
Sbjct: 30  IFDTETTGFAINGADRMIEIAGVRVAGLEVQEQTFQTFVNPD--REIPEKITSLTGISGE 87

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +KD PS       F+ F  + +++ W+ H   FD+  +  EL R +K   D   ++DTL
Sbjct: 88  KVKDAPSSLEALERFFQFNEDIDSKLWVGHYVSFDMMVVKKELLR-HKYTYDTPLVVDTL 146

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +    +PS    DL     ++G  +  R  H AL D+   + ++ ++M
Sbjct: 147 DLIGYLNPSRDMRDLEVYALQFGTLVYER--HQALGDAMTTAHLFCELM 193


>gi|261408383|ref|YP_003244624.1| hypothetical protein GYMC10_4596 [Paenibacillus sp. Y412MC10]
 gi|261284846|gb|ACX66817.1| DNA polymerase III, epsilon subunit [Paenibacillus sp. Y412MC10]
          Length = 246

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 92/174 (52%), Gaps = 9/174 (5%)

Query: 5   NKMRKIVFDIETTGLDSKN-DRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +++  +VFD+ETTG + ++ D I+  GA+ ++ +    N TF + +  +G   SP   +L
Sbjct: 57  DELEVVVFDLETTGFNHQHGDEILSFGAIRVIGEQVIENETFHM-IVNSGAPVSPFIAEL 115

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT + +   P       +F  F   +    +AH A  D GF+NA L + +K  L   R
Sbjct: 116 TGITQQMVDAAPPLMEGLHDFMAFIGGR--VLVAHAAAHDRGFLNAALWKTSKVRLT-HR 172

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++DT+ +A+R +P  ++  L+ L +  GI +  R  H AL D+ + + ++   M
Sbjct: 173 LLDTMMLAQRLYPEQKDYSLDELLRSSGIPVEGR--HHALSDARMTARLWADYM 224


>gi|329929369|ref|ZP_08283117.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Paenibacillus sp. HGF5]
 gi|328936456|gb|EGG32901.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Paenibacillus sp. HGF5]
          Length = 246

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 92/174 (52%), Gaps = 9/174 (5%)

Query: 5   NKMRKIVFDIETTGLDSKN-DRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +++  +VFD+ETTG + ++ D I+  GA+ ++ +    N TF + +  +G   SP   +L
Sbjct: 57  DELEVVVFDLETTGFNHQHGDEILSFGAIRVIGEQVIENETFHM-IVNSGAPVSPFIAEL 115

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT + +   P       +F  F   +    +AH A  D GF+NA L + +K  L   R
Sbjct: 116 TGITQQMVDAAPPLMEGLHDFMAFIGGR--VLVAHAAAHDRGFLNAALWKTSKVRLT-HR 172

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++DT+ +A+R +P  ++  L+ L +  GI +  R  H AL D+ + + ++   M
Sbjct: 173 LLDTMMLAQRLYPEQKDYSLDELLRSSGIPVEGR--HHALSDARMTARLWADYM 224


>gi|193212627|ref|YP_001998580.1| DNA polymerase III subunit epsilon [Chlorobaculum parvum NCIB 8327]
 gi|193086104|gb|ACF11380.1| DNA polymerase III, epsilon subunit [Chlorobaculum parvum NCIB
           8327]
          Length = 232

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 22/184 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           R +++D ETTG D ++DRII IGAV    E++D +    +F+V L      +  +A+ +H
Sbjct: 44  RFVIYDTETTGFDFRHDRIISIGAVGTKGEVIDIAD---SFEVLL-RQEVCSERDAVTVH 99

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G+    +      S     F D+    NA  +AH+A FD+  IN  L R     L  +  
Sbjct: 100 GLLKRDIDSGLEESEAVCRFLDYLG--NAVIVAHHADFDIAMINQVLSRRFGMRL-FNEA 156

Query: 124 IDTLSIARR---------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +DT S A+R          H      L++LC RYGI +  R  H A  D++L + ++ ++
Sbjct: 157 LDTASFAKRLEKGPYYNLAHKGGEYRLDNLCARYGIRLYDR--HTAPGDAYLTAQLFQRL 214

Query: 175 MVGG 178
           +  G
Sbjct: 215 LALG 218


>gi|261416372|ref|YP_003250055.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372828|gb|ACX75573.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326099|gb|ADL25300.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 188

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 7/141 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   +++RI+EIG + L+D S+   T+   + P G+  +P   +L GITDE +
Sbjct: 6   VVDLETTGGHGEDNRIMEIG-IALMDGSEIVETYHALVDP-GKPITPFVRELTGITDEMV 63

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +P F  I          Q+  ++AHN +FD  ++ AEL+R      +P+R+  T+ ++
Sbjct: 64  SGQPQFGVIAEHVAALL--QDRIFVAHNVQFDCKYMTAELKRCCIK-FNPARLC-TVKLS 119

Query: 131 RRKHPSSRN-DLNSLCKRYGI 150
           RR  P   +  L+ L +  G+
Sbjct: 120 RRVFPGQPSYSLHKLTESLGL 140


>gi|296140382|ref|YP_003647625.1| DNA polymerase III subunit epsilon [Tsukamurella paurometabola DSM
           20162]
 gi|296028516|gb|ADG79286.1| DNA polymerase III, epsilon subunit [Tsukamurella paurometabola DSM
           20162]
          Length = 610

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 22/207 (10%)

Query: 10  IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D+ETTG   K  D I EIGAV++    +    F   + P  R  +P    L GIT  
Sbjct: 23  VVVDLETTGGSPKGGDAITEIGAVKVRG-GEVLGEFATLVDPE-RGIAPHITHLTGITTA 80

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+ +S+   F +F   Q A  +AHNA+FD+GF+ A        P    + + T+ 
Sbjct: 81  MVTGAPTIASVLPAFLEF--AQGAVLVAHNARFDIGFLKAAAA-ATGTPWPKPQTLCTVQ 137

Query: 129 IARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +ARR     + PS +    +   R   T +HR    AL D+    DV   ++  G   N 
Sbjct: 138 LARRVLTRDEAPSVKLSEMARLFRAETTPTHR----ALDDARATVDVLHGLI--GRVGNL 191

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDK 210
           G +T     F E +  +P+++  +R K
Sbjct: 192 GIRT-----FAELRGHLPSVTPQQRAK 213


>gi|171920237|ref|ZP_02690314.2| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 1 str. ATCC 27813]
 gi|171902634|gb|EDT48923.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 1 str. ATCC 27813]
          Length = 1442

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 7/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FDIETTGL    D IIE GA+ + +  +     Q F+ P    N      L  I+ E 
Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINE-NITNLTNISQEM 468

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-DPSRIIDTL 127
           + +     +   +  + F+  N   +AHN   FD+ FIN  L +   +PL +PS  IDTL
Sbjct: 469 VNNAIDEKTALLKIKEIFD--NHILVAHNGINFDINFINQRLLKWGLEPLKNPS--IDTL 524

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            I+R  +P   + L ++CK+Y +  +    H A  D+ +L+D +
Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADAF 568


>gi|330448476|ref|ZP_08312124.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492667|dbj|GAA06621.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 214

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           ++ D ETTGL  ++ DR IEIGAV+L +     + FQ  + P G + S       GI++ 
Sbjct: 18  VILDFETTGLSPNQGDRAIEIGAVKLQNGEVVGQ-FQQLMNP-GFRVSSFIEGYTGISNN 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  PS   + +EF DF  + N   +AHNA FD  F++AEL++IN+          ++ 
Sbjct: 76  MLRTAPSCDVVMNEFADFIGDAN--LVAHNASFDQRFLDAELEQINRHY--GGTFTCSML 131

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IARR +  + N        Y     +   H AL DS + + +++ M+
Sbjct: 132 IARRLYQDAPNHKLGTLVDYKNIYHNGVFHRALADSEMTARLWLVML 178


>gi|108805769|ref|YP_645706.1| hypothetical protein Rxyl_2984 [Rubrobacter xylanophilus DSM 9941]
 gi|108767012|gb|ABG05894.1| DNA polymerase III, epsilon subunit [Rubrobacter xylanophilus DSM
           9941]
          Length = 560

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 9/142 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG  ++   I E+GA++L+     +R F   + P GR   P   +L GITDE 
Sbjct: 34  VVFDLETTGSSAREGGITELGALKLVRGRVVDR-FSTLVNP-GRPIEPFVARLTGITDEM 91

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P    +   F +F   + +  +AHNA FD  F+ A   R  +   +P  ++DTL +
Sbjct: 92  VSGAPPAREVIPRFEEF--AEGSVLVAHNAGFDCSFLAA--ARGGRGLPNP--VLDTLRL 145

Query: 130 ARRKHPSSRN-DLNSLCKRYGI 150
           AR   P  R   L++L   +G+
Sbjct: 146 ARLLVPGLRRYRLSALVSHFGV 167


>gi|315924481|ref|ZP_07920702.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622185|gb|EFV02145.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 1442

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 13/169 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL +  D IIEI AV++ +    + TFQ F+ P+ R    +  +L  ITD+ 
Sbjct: 428 VFFDLETTGLYAGRDAIIEIAAVKIKNKHVLD-TFQTFVNPH-RPIPQKITELTSITDQM 485

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTL 127
           +       +    F DF + +     AHNA FD+GF++  L+R       P+ I  +DTL
Sbjct: 486 VAQGKEEEAAVRAFLDFCDGKI--LAAHNASFDMGFMSIALERYGI----PNTITYVDTL 539

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +AR   P  +R++L  L   + I + H   H A+ DS   + +++++M
Sbjct: 540 PMARTLIPDIARHNLKKLASYFKIDMGHH--HRAIDDSICSAKIFVRLM 586


>gi|328470587|gb|EGF41498.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus 10329]
          Length = 204

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 90/175 (51%), Gaps = 19/175 (10%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV+L+D    + +FQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPTLGDRAIEIGAVKLVDGEVVD-SFQQLMNP-GFRVSSFIENYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RIN           +L 
Sbjct: 66  MLRIAPSCEEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCGY--SGEFACSLL 121

Query: 129 IARR---KHPSSRNDLNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKMMVG 177
           +ARR     PS +  L  L +   I    I HR    AL D+ + + +++ M+ G
Sbjct: 122 VARRLIQDAPSHK--LGELVRYKNIDNDGIFHR----ALADAQMTAKLWLLMVEG 170


>gi|307718875|ref|YP_003874407.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
           6192]
 gi|306532600|gb|ADN02134.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
           6192]
          Length = 198

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGLD     ++EI  V+        R F   L         E  K+HGI D+ 
Sbjct: 22  VTFDLETTGLDPVRHSVVEIACVKF--QGGEPRAFFSLLVKPPHPIPAEVTKIHGIGDQD 79

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ P   S+      F        +AHNA FD+ F+  E  R  + P    R IDT  +
Sbjct: 80  VEEAPPLPSVLPMLESFVGTHL--LVAHNAPFDLSFLRMEYARCGR-PYPGFRAIDTRLL 136

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           AR   P   R  L SL +   I + H   H AL D+    D++  +
Sbjct: 137 ARSVLPHLGRYSLASLTRALDIPLQHH--HRALSDAWACGDLFYAL 180


>gi|262202943|ref|YP_003274151.1| DNA polymerase III subunit epsilon [Gordonia bronchialis DSM 43247]
 gi|262086290|gb|ACY22258.1| DNA polymerase III, epsilon subunit [Gordonia bronchialis DSM
           43247]
          Length = 595

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 20/174 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG D   DRI EIGAV++    +    F   + P  R   P+ + L GIT   
Sbjct: 39  VVVDLETTGSDPAGDRITEIGAVKIRG-GEVLGEFATLVDPE-RSIPPQIVTLTGITHAM 96

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSRIIDT 126
           +   P    +   F +F   + +  +AHNA+FD+GF+    QR++ D   PL     + T
Sbjct: 97  VSAAPRIEEVLPAFIEF--ARGSILVAHNARFDMGFLRRNAQRLHLDFPFPLS----LCT 150

Query: 127 LSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +++ARR     + P+ R  L++L   + +++  R  H AL D+    +V+  ++
Sbjct: 151 VTMARRILHREEAPTVR--LSALADLFDVSV--RPTHRALDDARATVEVFHHLL 200


>gi|326692542|ref|ZP_08229547.1| DNA polymerase III, alpha subunit [Leuconostoc argentinum KCTC
           3773]
          Length = 1437

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL +  D+IIE+ AV+ +        F  ++ P G   S    +L  ITD  
Sbjct: 420 VAFDLETTGLSAVTDKIIELSAVK-MQLGNVVDQFSEYINP-GFPLSEFTTELTSITDSM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + +    S +   F D+  +  A  I HN  FD+GF+NA   R  K P   + +IDTL  
Sbjct: 478 VANADPESDVIQRFRDWVGD--AVLIGHNVTFDIGFMNAAYARYQK-PAIGNPVIDTLPF 534

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R  +P  ++  L ++ KR+ I +     H A+ DS     +  ++M
Sbjct: 535 TRWLYPDYKSYRLGTIAKRFNINLEQ--AHRAIFDSETTGHIAWRLM 579


>gi|254510913|ref|ZP_05122980.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacteraceae bacterium KLH11]
 gi|221534624|gb|EEE37612.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacteraceae bacterium KLH11]
          Length = 470

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 5/167 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD ETTGL    D I++IGAV ++            L   G      + ++H I D  
Sbjct: 279 VVFDTETTGLLPHKDEIVQIGAVRVIKGRIVEGEQLDMLVDPGIPIPAASTRVHKINDAM 338

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  +     F  F   ++A  +AHNA FD+ F++   +R+  +   P  ++DT+ +
Sbjct: 339 VLGAPDIAKAGLIFHQF--SRDAVIVAHNAPFDMAFLHRHAKRMGVEWTHP--VLDTVLL 394

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +     +S  + L+++C R G+TI    +H AL D+   ++V ++M+
Sbjct: 395 SAVLFGASETHTLDAVCARLGVTIPATLRHTALGDAVATAEVLVRML 441


>gi|261753605|ref|ZP_05997314.1| DNA polymerase III [Brucella suis bv. 3 str. 686]
 gi|261743358|gb|EEY31284.1| DNA polymerase III [Brucella suis bv. 3 str. 686]
          Length = 233

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 7/172 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 18  IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 76  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172
            +  T+  ARR        L+    + G+  + HR  HGAL D++L + +Y+
Sbjct: 134 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARMGHR--HGALEDAYLTAGLYL 183


>gi|312793079|ref|YP_004026002.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180219|gb|ADQ40389.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 1402

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTG DS+ DRIIEIGAV++ +   T+R F  F+ P G K      +L GI  + 
Sbjct: 391 VVVDIETTGFDSQRDRIIEIGAVKIENGQITDR-FSTFVDPEG-KIPVRISELTGIYQDM 448

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P       EF  F    ++  +AHNA+FD+GF+    Q      +     IDTL +
Sbjct: 449 VDKAPKLIDAILEFERF--ASSSVLVAHNAQFDIGFLKKAYQECG--IIFDYTYIDTLEL 504

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +RR     S   LN + +   + + H   H A  D+   + ++I ++
Sbjct: 505 SRRLLTDLSSYKLNKVAEFLNVELRHH--HRADSDAETTAGIFISLL 549


>gi|269215783|ref|ZP_06159637.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122]
 gi|269130733|gb|EEZ61809.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122]
          Length = 291

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT-DE 68
           +V DIETTGL+   D IIE+ A+ +    +T+  FQ  +   G  +   A KL G++   
Sbjct: 129 VVVDIETTGLNPNKDEIIELAAIRVRGGRETD-AFQCLVRCGGELSDAIA-KLTGLSHSR 186

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +     +    F +F ++     +AHNA+FD+GFI +  + ++ D  D +  +DTL+
Sbjct: 187 LMAEGLILENALMNFLEFVSDDLI--VAHNAEFDIGFIQSACEELDWDDFD-NDYLDTLA 243

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +AR+K P  S + L+SL +R  + + +R  H AL D  L   + +K+
Sbjct: 244 LARKKLPQISDHRLSSLAER--LHLENRQPHRALSDCRLTHCLLVKL 288


>gi|317051112|ref|YP_004112228.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5]
 gi|316946196|gb|ADU65672.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5]
          Length = 169

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+ETTGL  ++  R+IEI AV++ +  +    F   L   G   S     +HGIT  
Sbjct: 5   VAIDVETTGLSPARGARVIEIAAVKM-EQGQVIAEF-CSLIQVGVPVSAATTGVHGITTA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  +P+   I+ +F  F        +AHNA FD+ F+++ELQR+     +PS    TL 
Sbjct: 63  MLAGQPAPGEIWPQFIWFIEHHPI--VAHNAPFDMRFVHSELQRLGLSMANPSHC--TLR 118

Query: 129 IARRKHPSSRND-LNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKM 174
           + RRK+P   N  L  L +   G        H AL D+ L + V+ +M
Sbjct: 119 LGRRKYPRLPNHKLEYLAQHVLGKLPPEIQLHRALGDARLTAMVWEEM 166


>gi|323485384|ref|ZP_08090732.1| DNA polymerase III PolC-type [Clostridium symbiosum WAL-14163]
 gi|323401247|gb|EGA93597.1| DNA polymerase III PolC-type [Clostridium symbiosum WAL-14163]
          Length = 263

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 10/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTGLD K+D+IIEIGAV ++D  +   TF  F+ P  R+      +L GIT E 
Sbjct: 27  VAIDLETTGLDPKHDKIIEIGAVLVID-GEIKETFSTFVNPR-RELDGRIRELTGITGEM 84

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
               P    +     +F   ++   + H+  FD  F+      +NK  +     IDTL++
Sbjct: 85  TAGAPDIGDVIGRVVEFC--RDLPLLGHHIIFDYSFLKRAA--VNKGLVFEKSGIDTLTL 140

Query: 130 ARRKHP-SSRNDLNSLCKRYGI--TISHRSKHGALLDSHLL 167
            RR  P   + +L +  + YGI  T +HR+   A L +HLL
Sbjct: 141 CRRFMPEEEKKNLENASRYYGIKQTDAHRALADA-LTAHLL 180


>gi|23500370|ref|NP_699810.1| exonuclease [Brucella suis 1330]
 gi|161620685|ref|YP_001594571.1| exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|254702995|ref|ZP_05164823.1| exonuclease, RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
 gi|260568091|ref|ZP_05838560.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|23463988|gb|AAN33815.1| exonuclease, putative [Brucella suis 1330]
 gi|161337496|gb|ABX63800.1| Exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|260154756|gb|EEW89837.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
          Length = 224

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 7/172 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172
            +  T+  ARR        L+    + G+  + HR  HGAL D++L + +Y+
Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARMGHR--HGALEDAYLTAGLYL 174


>gi|226307078|ref|YP_002767038.1| DNA polymerase III epsilon subunit [Rhodococcus erythropolis PR4]
 gi|226186195|dbj|BAH34299.1| putative DNA polymerase III epsilon subunit [Rhodococcus
           erythropolis PR4]
          Length = 586

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 25/208 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG  +  D I EIGAV++             L   GR   P  ++L GIT   
Sbjct: 42  VVVDLETTGGSADQDSITEIGAVKIRGGEVLGE--MATLVDPGRSIPPYIVELTGITTAM 99

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P    +   F +F   + A  +AHNA FD+GF+ A   R  + P    R++ T+ +
Sbjct: 100 LIGAPPIERVLPAFLEF--AEGAVLVAHNAPFDIGFLKAAASRSAR-PWPSFRVLCTVKL 156

Query: 130 ARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQIN 182
           ARR     + PS +  L++L   + +T   +  H AL D+    DV   ++  VG   ++
Sbjct: 157 ARRVLTRDEAPSVK--LSALAHLFQVTT--QPTHRALDDARATVDVLHGLIDRVGNQGVH 212

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDK 210
                     + E    +PNIS  +R K
Sbjct: 213 ---------SYSELVDYLPNISSHQRAK 231


>gi|229490475|ref|ZP_04384316.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis
           SK121]
 gi|229322765|gb|EEN88545.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis
           SK121]
          Length = 608

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 25/208 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG  +  D I EIGAV++             L   GR   P  ++L GIT   
Sbjct: 64  VVVDLETTGGSADQDSITEIGAVKIRGGEVLGE--MATLVDPGRSIPPYIVELTGITTAM 121

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P    +   F +F   + A  +AHNA FD+GF+ A   R +  P    R++ T+ +
Sbjct: 122 LIGAPPIERVLPAFLEF--AEGAVLVAHNAPFDIGFLKAAASR-SARPWPAFRVLCTVKL 178

Query: 130 ARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQIN 182
           ARR     + PS +  L++L   + +T   +  H AL D+    DV   ++  VG   ++
Sbjct: 179 ARRVLTRDEAPSVK--LSALAHLFQVTT--QPTHRALDDARATVDVLHGLIDRVGNQGVH 234

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDK 210
                     + E    +PNIS  +R K
Sbjct: 235 ---------SYSELVDYLPNISSHQRAK 253


>gi|225572667|ref|ZP_03781422.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039967|gb|EEG50213.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1464

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFD+ETTG    + +IIEIGAV + D  K    F  F+ P  +   P  + +L  I D 
Sbjct: 441 VVFDLETTGFSPMSCQIIEIGAVRVED-GKIVERFSTFVNP--KVPIPFRIEQLTSINDS 497

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P    +  +F +F +   A  +AHNA FD+ F+     R+   P D +  IDT+ 
Sbjct: 498 MVMDAPVIEEVLPKFLEFCS--GAVMVAHNADFDMSFVEFNCDRLGI-PHDFT-YIDTVG 553

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   PS +R  L+++ K   I + H   H A+ D+   +D+++K +
Sbjct: 554 MARFLLPSLNRFKLDTVAKALEIPLGHH--HRAVDDAACTADIFVKFV 599


>gi|283798089|ref|ZP_06347242.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
 gi|291074233|gb|EFE11597.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
          Length = 1538

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 19/172 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66
           +VFDIETTG     ++IIEIGAV++ +    +R F  F+ P      P   E  KL  I+
Sbjct: 514 VVFDIETTGFSPLKNKIIEIGAVKVENGKIVDR-FSTFVNP----EVPIPFEIEKLTSIS 568

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124
           D  +   P    +  +F +F +  +A  +AHNA FD+ FI  NA +Q  + +P     ++
Sbjct: 569 DNMVLGAPKIEEVLPKFLEFCS--DAVMVAHNASFDMSFIRHNAMIQGKSFEP----TVL 622

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+S+AR   P+ +R  L+++ K   + IS  + H A+ D+   +++++K +
Sbjct: 623 DTVSMARFLLPNLNRFKLDTVAKE--LRISLENHHRAVDDAGATAEIFVKFV 672


>gi|189346954|ref|YP_001943483.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245]
 gi|189341101|gb|ACD90504.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245]
          Length = 214

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 11/169 (6%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITD 67
           +V D ETTGL  +  DR IEIGAV L+++ +    FQ  + P  R +S  E     GIT+
Sbjct: 10  VVLDFETTGLSPQYGDRAIEIGAV-LVEHGEIVDRFQKLMNPGFRISSFIEGYT--GITN 66

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LK +P    + +EF  F   +N   +AHNA FD  F++ EL+R  +  +       +L
Sbjct: 67  EMLKGQPCCEEVMAEFSGFIAGRNI--VAHNASFDRRFLDFELKRAKR--VYEGACCCSL 122

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++RR +  S N  L +L    GI  +  S H AL D+ + + +++ M+
Sbjct: 123 LVSRRIYQDSPNHRLQTLVTHAGIPETG-SFHRALADAEMTALLWMSMI 170


>gi|312876753|ref|ZP_07736732.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796484|gb|EFR12834.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 1402

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTG DS+ DRIIEIGAV++ +   T+R F  F+ P G K      +L GI  + 
Sbjct: 391 VVVDIETTGFDSQRDRIIEIGAVKIENGQITDR-FSTFVDPEG-KIPVRISELTGIYQDM 448

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P       EF  F     +  +AHNA+FD+GF+    Q      +     IDTL +
Sbjct: 449 VDKAPKLIDAILEFERF--ASGSVLVAHNAQFDIGFLKKAYQECG--IIFDYTYIDTLEL 504

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +RR     S   LN + +   + + H   H A  D+   + ++I ++
Sbjct: 505 SRRLLTDLSSYKLNKVAEFLNVELRHH--HRADSDAETTAGIFISLL 549


>gi|291287661|ref|YP_003504477.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884821|gb|ADD68521.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
          Length = 228

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 94/175 (53%), Gaps = 15/175 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETTGLD  + RII + AV++ ++ K    +  F+ P       E+++ H ITDE +
Sbjct: 47  VIDTETTGLDLNDARIINVAAVKVQNF-KIIDFYNSFINPETEI-PKESIQWHNITDEMV 104

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPSRIID 125
            DKP+   +  +F +F ++  +  + H+  FD+  IN E+      +IN + LD + +I 
Sbjct: 105 ADKPTAGEVLPDFLNFVDD--SIIVGHHVTFDIKMINKEMMDSFSCQINNNWLD-TMLIY 161

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           + +I ++     R  L+ L   Y +T + R  H AL D+   ++V+ KM++  S+
Sbjct: 162 SHAIIKK---DERYSLDYLLDLYNVTCNGR--HTALGDALATAEVFTKMIMQASR 211


>gi|291459111|ref|ZP_06598501.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418365|gb|EFE92084.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 1517

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 15/168 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK---LHGIT 66
           +VFDIETTG   + D+IIEIGAV+L +    +R   VF+ P      P   +   L  I 
Sbjct: 493 VVFDIETTGFHPQTDKIIEIGAVKLREGKICDR-MDVFVNP----EIPIPFRITQLTSID 547

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  +  + +   +  EF  F    +A  +AHNA FD GFI    +R+     DP+ ++DT
Sbjct: 548 DSMVIGERTIEELLPEFLSFCG--DAVIVAHNADFDTGFIRENARRLGLS-YDPT-VVDT 603

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + ++R   P  +R  L+++ K  GI++ +   H A+ D+   +++Y K
Sbjct: 604 VGLSRLLLPKLNRFKLDTVAKELGISLLNH--HRAVDDAEATAEIYQK 649


>gi|291280248|ref|YP_003497083.1| hypothetical protein DEFDS_1873 [Deferribacter desulfuricans SSM1]
 gi|290754950|dbj|BAI81327.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 200

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 96/178 (53%), Gaps = 14/178 (7%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSP-EALKLHGIT 66
           V D ETTGL   K  R++EI AV L +    + +R F   + P  +K  P +A K+H I+
Sbjct: 14  VVDTETTGLSPYKGARLVEIAAVRLDEGLNIRLDRGFSTLINP--KKPIPFQAYKIHKIS 71

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIID 125
           DE +KD P+   +   F  +   +N  ++AHNA FD  FI+   ++   + PL    +ID
Sbjct: 72  DEMVKDAPTIEEVLPHFSKYV--ENTVFVAHNAPFDFKFIDYFYKKTGMNCPL--IAVID 127

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           TL ++RR  P  ++  L+SL + + I   I+   +H A+ D+   + ++ K++   SQ
Sbjct: 128 TLKLSRRIIPGLKSYSLDSLIQHFNIKLKINGSYRHRAIYDALHTAIIFKKLIEIESQ 185


>gi|297620852|ref|YP_003708989.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU
           86-1044]
 gi|297376153|gb|ADI37983.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU
           86-1044]
          Length = 231

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 90/169 (53%), Gaps = 11/169 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I +D ETTG+ +++DRI+EI A + +    +  + +  + P G     EA K+H ITD
Sbjct: 4   RPIFYDTETTGIKAEHDRIVEIAAYDPI----SGCSLEELVNP-GIPIPKEASKVHHITD 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAH-NAKFDVGFINAELQRINKDPLDPSRIIDT 126
           + +KD P+F  +  +F +F +  +   IAH N  FDV F+  E +R   + +   R  DT
Sbjct: 59  DMVKDAPTFKEVGQKFIEFCS-GDVILIAHNNDNFDVHFLRHEFKRHALE-MPEWRFFDT 116

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L  ARR  P   R+ L  L + Y I  +  + H AL D  +L  V+ KM
Sbjct: 117 LKWARRYRPDLPRHALQFLREIYSIEAN--NAHRALDDVIVLHKVFEKM 163


>gi|227873963|ref|ZP_03992179.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268]
 gi|227840171|gb|EEJ50585.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268]
          Length = 178

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 9/174 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R IVFD+ET   + KN+RI  IG + +++  K ++ F   + P    +    +KL GI+ 
Sbjct: 3   RFIVFDVETP--NRKNNRISAIG-ITVVEEGKISKEFYSLVNPETNFDYFN-VKLTGISK 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +KD P+F  ++ +    F++     +AHNA FD+  +   L     D    +R + T+
Sbjct: 59  ASVKDAPTFPELWQQIEPLFSD--GMLVAHNASFDMNVLKNCLLDYEIDWKPYARYLCTV 116

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            + R   P   + LN +C+ +GI++ H   H A  DSH  +++ ++ +  G+++
Sbjct: 117 KMGRSLFPDRSHKLNMVCEDFGISLQH---HRADSDSHACAEILLRYLEAGAEV 167


>gi|146300234|ref|YP_001194825.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
 gi|146154652|gb|ABQ05506.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
          Length = 209

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 94/182 (51%), Gaps = 15/182 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEAL 60
           I   + R +V D ETTG D +NDRI+ IGA+ L +       +F+++L  +    S    
Sbjct: 18  ITIEETRFVVLDTETTGFDYENDRILCIGALALQNGVISVQDSFEIYLHQDHYDKSTA-- 75

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGI  + L  +P+      +F DF    ++  IAH+  FDV  IN  L+R N  P   
Sbjct: 76  QIHGILKDLLVKRPTELEALQQFLDFLG--DSIIIAHHTVFDVTMINKALER-NGLPQLT 132

Query: 121 SRIIDTLSIARR----KHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++ +DT  + ++     H   R D   L+ L  ++   IS + +H AL D+++ +  ++K
Sbjct: 133 NKTLDTAYLYKKTLIQSHLFERKDHYTLDDLADKFD--ISKKDRHTALGDAYITAIAFLK 190

Query: 174 MM 175
           ++
Sbjct: 191 IV 192


>gi|120436251|ref|YP_861937.1| exonuclease family protein [Gramella forsetii KT0803]
 gi|117578401|emb|CAL66870.1| exonuclease family protein [Gramella forsetii KT0803]
          Length = 223

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 96/178 (53%), Gaps = 17/178 (9%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R IVFD ETTG +   DR++ IGAV + + S + +  F+VFL    +K +PE +K+HGI
Sbjct: 37  IRFIVFDTETTGFNYDEDRVLSIGAVRIENNSIEISDNFEVFL--EQKKFNPETVKIHGI 94

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                 +K S      +F  +   QN+  +AH+A FD+  IN  L R N  P   ++++D
Sbjct: 95  IQNEKFEKLSELEALKKFLSYI--QNSVLVAHHAGFDMKMINKALSR-NGLPKLKNKVLD 151

Query: 126 TLSIARRKHPSSRN--------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T SI  +K   + N         L+ + + Y I +  R  H A  D+++ + +++K++
Sbjct: 152 T-SILYKKTRIATNFIDRDKIYSLDEIAEAYNIDLIDR--HTASGDAYITALIFMKLL 206


>gi|323694146|ref|ZP_08108325.1| DNA polymerase III subunit epsilon [Clostridium symbiosum
           WAL-14673]
 gi|323501863|gb|EGB17746.1| DNA polymerase III subunit epsilon [Clostridium symbiosum
           WAL-14673]
          Length = 226

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 10/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTGLD K+D+IIEIGAV ++D  +   TF  F+ P  R+      +L GIT E 
Sbjct: 27  VAIDLETTGLDPKHDKIIEIGAVLVID-GEIKETFSTFVNPR-RELDGRIRELTGITGEM 84

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
               P    +     +F   ++   + H+  FD  F+      +NK  +     IDTL++
Sbjct: 85  TAGAPDIGDVIGRVVEFC--RDLPLLGHHIIFDYSFLKR--AAVNKGLVFEKSGIDTLTL 140

Query: 130 ARRKHP-SSRNDLNSLCKRYGI--TISHRSKHGALLDSHLL 167
            RR  P   + +L +  + YGI  T +HR+   A L +HLL
Sbjct: 141 CRRFMPEEEKKNLENASRYYGIKQTDAHRALADA-LTAHLL 180


>gi|330815857|ref|YP_004359562.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia gladioli BSR3]
 gi|327368250|gb|AEA59606.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia gladioli BSR3]
          Length = 388

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 20/168 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEFLK 71
           D+ETTG  + + RI EIG VE+     +  T+   + P   +  P  ++ L GI+DE ++
Sbjct: 19  DLETTGGSAADHRITEIGVVEVGPQGVS--TWTSLIDPQ--QPIPAFIQQLTGISDEMVR 74

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSRIIDTL 127
             P+FSSI +E   F   +   +IAHNA FD GF+ AE +R     N D      ++ T+
Sbjct: 75  GAPTFSSIAAEL--FARLEGRLFIAHNASFDRGFLRAEFERAGFAFNPD------MLCTV 126

Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++R   P  SR+ L++L +R+ +  + R  H AL D+ L+   + ++
Sbjct: 127 RLSRALFPRESRHGLDALIERHALVPNAR--HRALADADLVWQFWQRL 172


>gi|163784927|ref|ZP_02179686.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879804|gb|EDP73549.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 206

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 88/163 (53%), Gaps = 11/163 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKL 62
           N+   ++ D+ETTGL + N+ +IE+ A++   Y       Q+      R+N    + + L
Sbjct: 8   NEATFVIIDLETTGLSASNNSVIEVAAIK---YQSGMIIDQLHHLTKPRENFIPSKVINL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT+  + DKP F  I+ E ++F   +++  +AHNAKFD+ F++   + + K+ L    
Sbjct: 65  TGITNAMVIDKPYFEDIYPEVYNFL--KDSIVVAHNAKFDISFLSEVHKIVFKNNLRLHY 122

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           I  T ++ARR  P   +  L+SL    G  I+ + KH AL D+
Sbjct: 123 IC-TDNLARRIFPEIQKKSLSSLTNYLG--INFKQKHRALSDA 162


>gi|86741790|ref|YP_482190.1| hypothetical protein Francci3_3104 [Frankia sp. CcI3]
 gi|86568652|gb|ABD12461.1| DNA polymerase III, epsilon subunit [Frankia sp. CcI3]
          Length = 584

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 77/168 (45%), Gaps = 18/168 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHGITD 67
           +VFD+ETTG     D I EIGAV +    +  R       L   G    P    L GITD
Sbjct: 31  VVFDLETTGTSPGRDEITEIGAVRV----RGGRILAEMATLVRPGVGIPPMVSVLTGITD 86

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P  + +   F +F   + A  +AHNA FD+GF+ A ++ +   P+     +DTL
Sbjct: 87  VMVATAPPVTQVLPTFLEF--ARGAVLVAHNAPFDLGFLRAAVE-LCGYPVPVWEYLDTL 143

Query: 128 SIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            IARR     + P  R  L SL   +   +  R  H AL D+    DV
Sbjct: 144 RIARRVVTRDESPDCR--LTSLASLFRSPVEPR--HRALADARATVDV 187


>gi|309812650|ref|ZP_07706394.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185]
 gi|308433345|gb|EFP57233.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185]
          Length = 608

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 9/169 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+ET G       I EIGAV++         F   + P G    P+  +L GIT   
Sbjct: 29  VIVDLETAGGRPGAQGITEIGAVKVRGGEVLGE-FATLVDP-GCAIPPQIQRLTGITTAM 86

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P  +S+   F++F    +A  +AHNA FDVGF+ A  + +   P     ++DT+ +
Sbjct: 87  VHNAPKLASVLPAFFEFLGP-DAVLVAHNAPFDVGFLTAAARDLEV-PWPAPAVVDTVKL 144

Query: 130 ARRKHP--SSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P    RN  L +L   +G +++    H AL D+    DV   ++
Sbjct: 145 ARALVPRDEVRNHRLGTLAAHFGASVN--PNHRALADAQATVDVLHALL 191


>gi|302519143|ref|ZP_07271485.1| DNA polymerase III [Streptomyces sp. SPB78]
 gi|302428038|gb|EFK99853.1| DNA polymerase III [Streptomyces sp. SPB78]
          Length = 664

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 9/164 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ET+GL ++ DR++ +  V +    +    F   + P      P  + +HG+T E L
Sbjct: 74  LVDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTLVDPG---CDPGPVDVHGLTRERL 130

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P+F  I          Q+   +AHNA+FD  F+  E  R     L  +R + TL++ 
Sbjct: 131 SGAPAFGQIAGRLGAML--QDRVLVAHNAQFDYDFLAHEFARARLY-LPVTRRLCTLALN 187

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           R+  P +R+  L SL   YG+  +    H AL D+ +L+ ++++
Sbjct: 188 RQVDPPTRDMKLGSLAAHYGVPRTR--AHDALDDTRVLAGIFLR 229


>gi|291542732|emb|CBL15842.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus
           bromii L2-63]
          Length = 1452

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 11/167 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           I FDIETTGL +  D+I EIGAV++ +   T+ TF  F  P      P+ + +L GITD+
Sbjct: 436 ICFDIETTGLSAARDKITEIGAVKVENGVITD-TFSTFANP--EMPIPQKITQLTGITDD 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD PS S     F +F  +     +AHNA FD  FI    + + ++    S  IDT++
Sbjct: 493 MVKDAPSQSEAVGAFLEFAGDN--VLVAHNAPFDTSFIAKACEDMGREYNYTS--IDTVA 548

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           I+R      +N  L+++ K   + +   + H A  D+ +L+ ++I +
Sbjct: 549 ISRAILTDIKNCKLDTVAKF--LRLGDFNHHRATDDAEMLARIFINL 593


>gi|110638081|ref|YP_678290.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280762|gb|ABG58948.1| DNA polymerase III, epsilon subunit [Cytophaga hutchinsonii ATCC
           33406]
          Length = 449

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 14/171 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   + DIETTG  +  +RIIEI A+   D  K   T+Q  + P  R+       L GI 
Sbjct: 1   MMYSIIDIETTGGHASGNRIIEI-AIYKFDGEKITDTYQTLINPE-RRIPVFITSLTGID 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E + D P F+ +  E  DF   +++ ++AHN  FD  F+  ELQ +N  P +  ++  T
Sbjct: 59  TEMVADAPVFADVAREITDF--TRDSVFVAHNVNFDYTFVKKELQALNM-PYNLPKLC-T 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA-------LLDSHLLSD 169
           + ++R+  P      L +LC   GI + +R +          LL+  LL+D
Sbjct: 115 VRLSRKIFPGLPSYSLGNLCGSLGIDVQNRHRAAGDAEATVRLLNKLLLND 165


>gi|134299597|ref|YP_001113093.1| DNA polymerase III subunit epsilon [Desulfotomaculum reducens MI-1]
 gi|134052297|gb|ABO50268.1| DNA polymerase III, epsilon subunit [Desulfotomaculum reducens
           MI-1]
          Length = 930

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 18/169 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           +  D+ET+GLD   D IIEIG V+++D  K   +F   + P G    P  +K L GI D 
Sbjct: 5   VALDLETSGLDCLQDEIIEIGLVKMVD-GKEIDSFSTLIRPKGIL--PVKIKRLTGIKDH 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P    +      F    +   + HN KFD  F++  +Q    +PL      DTL 
Sbjct: 62  ELQDAPKLQEVLPVILQFI--ADLPLVGHNVKFDYDFLSTAVQSPLANPL-----YDTLE 114

Query: 129 IARRKHPSSRND-LNSLCKRYGITI--SHR----SKHGALLDSHLLSDV 170
           +++   P + N  L  LC   GI I   HR    ++  A+L  HLL+  
Sbjct: 115 LSKYLMPGASNHRLGYLCSYLGIDIPNQHRALDDARGAAMLLIHLLNQC 163


>gi|306835084|ref|ZP_07468126.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC
           49726]
 gi|304569032|gb|EFM44555.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC
           49726]
          Length = 231

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 15/147 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLHGITDE 68
           V D ETTG++ + DRIIE+ AV    +     ++   L P+G+  KNS     +HGIT++
Sbjct: 33  VIDTETTGVNKRYDRIIELAAVRADAHFNPVDSWHTLLSPDGKAIKNS----HIHGITND 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-----NKDPLDPSRI 123
            +   P+FS ++ +F  + +    + +AHNA FD   I AE+ R+     ++D   P   
Sbjct: 89  MVATAPTFSDVYGDFTSYID--GMQLLAHNAPFDSKMIIAEVDRMTGVGDSEDEYFP--F 144

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGI 150
           IDT+ +A++       +L +L  R G+
Sbjct: 145 IDTIDLAKQMLDHGPYNLPALLDRLGL 171


>gi|297249562|ref|ZP_06933263.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|297173431|gb|EFH32795.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|326554073|gb|ADZ88712.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90]
          Length = 235

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 7/172 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 20  IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 77

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 78  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 135

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172
            +  T+  ARR        L+    + G+    HR  HGAL D++L + +Y+
Sbjct: 136 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 185


>gi|254699857|ref|ZP_05161685.1| DNA polymerase III, epsilon chain [Brucella suis bv. 5 str. 513]
          Length = 224

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 7/172 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172
            +  T+  ARR        L+    + G+    HR  HGAL D++L + +Y+
Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 174


>gi|228992309|ref|ZP_04152240.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM
           12442]
 gi|228767334|gb|EEM15966.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM
           12442]
          Length = 315

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  NDRII++ AV   ++   ++ F  F+ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDRIIQVAAVRYRNHELADQ-FVSFVNPE-RFIPNRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127
           + D P+   +   F  F  E     +AHNA FD+ F+  NA++ R+   P   + +IDT+
Sbjct: 69  VSDAPTIQEVLPLFLAFLGEDTI--VAHNASFDMRFLKSNAKMLRL---PEPKNIVIDTV 123

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +A+R    +RN  L +L +  GI +   S H AL D    + VY K
Sbjct: 124 FLAKRYMKHARNHKLETLKRMLGIRL---SSHNALDDCITCAAVYQK 167


>gi|68535768|ref|YP_250473.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411]
 gi|68263367|emb|CAI36855.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411]
          Length = 222

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 76/148 (51%), Gaps = 16/148 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLHGITDE 68
           V D ETTG + + DRIIEI AV    +     ++   L P+G+  KNS     +HGIT++
Sbjct: 23  VIDTETTGFNKRYDRIIEIAAVRADAHFNPVDSWHTLLNPDGKAIKNS----HIHGITND 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI------NKDPLDPSR 122
            +   P+FS ++ +F  + +       AHNA FD   I AE+ R+      N+D   P  
Sbjct: 79  MVATAPTFSEVYGDFTSYID--GMHLFAHNAPFDSKMIVAEVDRMTGVDDGNEDEFFP-- 134

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGI 150
            IDT+ +A++       +L +L  R G+
Sbjct: 135 FIDTIDLAKQMLDRGPYNLPALLDRLGL 162


>gi|186701836|ref|ZP_02971504.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
 gi|186701125|gb|EDU19407.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
          Length = 1442

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 85/167 (50%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FDIETTGL    D IIE GA+ + +  +     Q  + P  + N      L  I+ E 
Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFLVKPIQQINE-NITNLTNISQEM 468

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-DPSRIIDTL 127
           + +     +   +  + F+  N   +AHN   FD+ FIN  L +   +PL +PS  IDTL
Sbjct: 469 VNNAIDEKTALLKIKEIFD--NHILVAHNGINFDINFINQRLLKWGLEPLKNPS--IDTL 524

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M
Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEIAHRADYDAIVLADVFKVM 571


>gi|84514691|ref|ZP_01002055.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella
           vestfoldensis SKA53]
 gi|84511742|gb|EAQ08195.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella
           vestfoldensis SKA53]
          Length = 469

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 94/198 (47%), Gaps = 11/198 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD ETTG     D +++IGA+ +++  +        L   GR     +  +H ITD  
Sbjct: 277 VVFDTETTGFLPNKDEVVQIGALRVVNGQQAPGEVLDLLVNPGRAIPASSTAVHRITDAM 336

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P       +F  F   ++A  +AHNA FD+ F +    +I      P  ++DT+ +
Sbjct: 337 VKDAPDMVHAGRKFHSF--ARDAVLVAHNAPFDLSFFHRYAPKIGMKFDHP--VLDTVLL 392

Query: 130 -ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK---MMVGGSQINFGF 185
            A     +  + L+ L KR GI +  + +H A+ D+    D++++   M+       FG 
Sbjct: 393 SAVLFGITEGHTLDELAKRLGIELLDKHRHTAIGDAIATRDIFLRMIPMLEARGLTTFGA 452

Query: 186 KTNEDRFFKEEKKTVPNI 203
              E    ++ K+ +P++
Sbjct: 453 VVAE---IRKHKRLLPDM 467


>gi|265989936|ref|ZP_06102493.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1]
 gi|263000605|gb|EEZ13295.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1]
          Length = 233

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 7/172 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 18  IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 76  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172
            +  T+  ARR        L+    + G+    HR  HGAL D++L + +Y+
Sbjct: 134 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 183


>gi|261750330|ref|ZP_05994039.1| DNA polymerase III [Brucella suis bv. 5 str. 513]
 gi|261740083|gb|EEY28009.1| DNA polymerase III [Brucella suis bv. 5 str. 513]
          Length = 233

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 7/172 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 18  IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 76  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172
            +  T+  ARR        L+    + G+    HR  HGAL D++L + +Y+
Sbjct: 134 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 183


>gi|17988995|ref|NP_541628.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str.
           16M]
 gi|260756615|ref|ZP_05868963.1| DNA polymerase III [Brucella abortus bv. 6 str. 870]
 gi|260760045|ref|ZP_05872393.1| DNA polymerase III [Brucella abortus bv. 4 str. 292]
 gi|260763284|ref|ZP_05875616.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882432|ref|ZP_05894046.1| DNA polymerase III [Brucella abortus bv. 9 str. C68]
 gi|261216075|ref|ZP_05930356.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya]
 gi|261217238|ref|ZP_05931519.1| DNA polymerase III [Brucella ceti M13/05/1]
 gi|261220458|ref|ZP_05934739.1| DNA polymerase III [Brucella ceti B1/94]
 gi|261313312|ref|ZP_05952509.1| DNA polymerase III [Brucella pinnipedialis M163/99/10]
 gi|261318701|ref|ZP_05957898.1| DNA polymerase III [Brucella pinnipedialis B2/94]
 gi|261320109|ref|ZP_05959306.1| DNA polymerase III [Brucella ceti M644/93/1]
 gi|265986499|ref|ZP_06099056.1| DNA polymerase III [Brucella pinnipedialis M292/94/1]
 gi|265992959|ref|ZP_06105516.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether]
 gi|265996191|ref|ZP_06108748.1| DNA polymerase III [Brucella ceti M490/95/1]
 gi|17984832|gb|AAL53892.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str.
           16M]
 gi|260670363|gb|EEX57303.1| DNA polymerase III [Brucella abortus bv. 4 str. 292]
 gi|260673705|gb|EEX60526.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676723|gb|EEX63544.1| DNA polymerase III [Brucella abortus bv. 6 str. 870]
 gi|260871960|gb|EEX79029.1| DNA polymerase III [Brucella abortus bv. 9 str. C68]
 gi|260917682|gb|EEX84543.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya]
 gi|260919042|gb|EEX85695.1| DNA polymerase III [Brucella ceti B1/94]
 gi|260922327|gb|EEX88895.1| DNA polymerase III [Brucella ceti M13/05/1]
 gi|261292799|gb|EEX96295.1| DNA polymerase III [Brucella ceti M644/93/1]
 gi|261297924|gb|EEY01421.1| DNA polymerase III [Brucella pinnipedialis B2/94]
 gi|261302338|gb|EEY05835.1| DNA polymerase III [Brucella pinnipedialis M163/99/10]
 gi|262550488|gb|EEZ06649.1| DNA polymerase III [Brucella ceti M490/95/1]
 gi|262763829|gb|EEZ09861.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether]
 gi|264658696|gb|EEZ28957.1| DNA polymerase III [Brucella pinnipedialis M292/94/1]
          Length = 233

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 7/172 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 18  IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 76  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172
            +  T+  ARR        L+    + G+    HR  HGAL D++L + +Y+
Sbjct: 134 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 183


>gi|118474671|ref|YP_892037.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118413897|gb|ABK82317.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 265

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 85/161 (52%), Gaps = 10/161 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIET+G    + +IIEIGA++LLD  +  R       PN  +N  E   L GI    L
Sbjct: 75  VVDIETSG-GINSGQIIEIGALKLLDGVEIGRFESFVYAPNVPENISE---LTGIYAADL 130

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              PS +++  +F  F  +  + ++AHN KFD  FI+  L+R+    L   RI  T+ +A
Sbjct: 131 AKAPSLANVLEKFKLFLGD--SVFVAHNVKFDYDFISISLERLGFGMLLNRRIC-TIDLA 187

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           RR   S +  L +L +  GI+ +H   H AL D+   ++++
Sbjct: 188 RRTIISQKYGLGTLKELLGISNAH---HRALNDAIAAAEIF 225


>gi|225629116|ref|ZP_03787149.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella ceti str. Cudo]
 gi|237817070|ref|ZP_04596062.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
           abortus str. 2308 A]
 gi|225615612|gb|EEH12661.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella ceti str. Cudo]
 gi|237787883|gb|EEP62099.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
           abortus str. 2308 A]
          Length = 248

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 7/172 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 33  IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 90

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 91  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 148

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172
            +  T+  ARR        L+    + G+    HR  HGAL D++L + +Y+
Sbjct: 149 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 198


>gi|240144403|ref|ZP_04743004.1| putative DNA polymerase III, alpha chain [Roseburia intestinalis
           L1-82]
 gi|257203586|gb|EEV01871.1| putative DNA polymerase III, alpha chain [Roseburia intestinalis
           L1-82]
          Length = 235

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 11/164 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D+E TGL++K D I+E+GAV + ++   ++ F   LC N +   PE + +L GIT+ 
Sbjct: 5   VVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDK-FGAILCQNVK--IPEKVTELTGITEA 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++          +F++F  E     +  N  FD GF+       N  PL+ S  +DTL 
Sbjct: 62  MVQGGMEKEEAMRQFFEFIGEDII--VGQNVIFDYGFLKQWAVNHNM-PLERS-AVDTLK 117

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +AR+  P   + DL SLC  +G  +   + H A  D++    +Y
Sbjct: 118 LARKFLPKEQKKDLESLCAYFG--VKRENAHRAFDDAYETWQIY 159


>gi|62317520|ref|YP_223373.1| exonuclease [Brucella abortus bv. 1 str. 9-941]
 gi|83269503|ref|YP_418794.1| DNA polymerase III subunit epsilon:exonuclease [Brucella melitensis
           biovar Abortus 2308]
 gi|148557905|ref|YP_001257609.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189022776|ref|YP_001932517.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|225686408|ref|YP_002734380.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella melitensis ATCC 23457]
 gi|254691019|ref|ZP_05154273.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 6 str. 870]
 gi|254695674|ref|ZP_05157502.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698803|ref|ZP_05160631.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254705882|ref|ZP_05167710.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis
           M163/99/10]
 gi|254711110|ref|ZP_05172921.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis B2/94]
 gi|254712430|ref|ZP_05174241.1| DNA polymerase III, epsilon chain [Brucella ceti M644/93/1]
 gi|254715502|ref|ZP_05177313.1| DNA polymerase III, epsilon chain [Brucella ceti M13/05/1]
 gi|254732250|ref|ZP_05190828.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 4 str. 292]
 gi|256015402|ref|YP_003105411.1| exonuclease, putative [Brucella microti CCM 4915]
 gi|256029491|ref|ZP_05443105.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis
           M292/94/1]
 gi|256111454|ref|ZP_05452474.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 3 str.
           Ether]
 gi|256157686|ref|ZP_05455604.1| DNA polymerase III, epsilon chain [Brucella ceti M490/95/1]
 gi|256253341|ref|ZP_05458877.1| DNA polymerase III, epsilon chain [Brucella ceti B1/94]
 gi|256256204|ref|ZP_05461740.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 9 str. C68]
 gi|256262453|ref|ZP_05464985.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|260167417|ref|ZP_05754228.1| DNA polymerase III, epsilon chain [Brucella sp. F5/99]
 gi|260544758|ref|ZP_05820579.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260564713|ref|ZP_05835198.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|261756828|ref|ZP_06000537.1| DNA polymerase III [Brucella sp. F5/99]
 gi|62197713|gb|AAX76012.1| exonuclease, hypothetical [Brucella abortus bv. 1 str. 9-941]
 gi|82939777|emb|CAJ12783.1| DNA polymerase III, epsilon subunit:Exonuclease [Brucella
           melitensis biovar Abortus 2308]
 gi|148369190|gb|ABQ62062.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189021350|gb|ACD74071.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|225642513|gb|ACO02426.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella melitensis ATCC 23457]
 gi|255998062|gb|ACU49749.1| exonuclease, putative [Brucella microti CCM 4915]
 gi|260098029|gb|EEW81903.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260152356|gb|EEW87449.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|261736812|gb|EEY24808.1| DNA polymerase III [Brucella sp. F5/99]
 gi|263092188|gb|EEZ16485.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|326410781|gb|ADZ67845.1| DNA polymerase III, epsilon subunit [Brucella melitensis M28]
          Length = 224

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 7/172 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172
            +  T+  ARR        L+    + G+    HR  HGAL D++L + +Y+
Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 174


>gi|261885284|ref|ZP_06009323.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 243

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 85/161 (52%), Gaps = 10/161 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIET+G    + +IIEIGA++LLD  +  R       PN  +N  E   L GI    L
Sbjct: 53  VVDIETSG-GINSGQIIEIGALKLLDGVEIGRFESFVYAPNVPENISE---LTGIYAADL 108

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              PS +++  +F  F  +  + ++AHN KFD  FI+  L+R+    L   RI  T+ +A
Sbjct: 109 AKAPSLANVLEKFKLFLGD--SVFVAHNVKFDYDFISISLERLGFGMLLNRRIC-TIDLA 165

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           RR   S +  L +L +  GI+ +H   H AL D+   ++++
Sbjct: 166 RRTIISQKYGLGTLKELLGISNAH---HRALNDAIAAAEIF 203


>gi|224826335|ref|ZP_03699437.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224601436|gb|EEG07617.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 476

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 10/160 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTG     DRI EIG + L+D  +  R ++  + P G+   P    + GI+D  +
Sbjct: 9   IVDLETTGGHITRDRITEIG-ILLIDGERIER-YETLVNP-GQPIPPFIENMTGISDAMV 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + P F+++     +    Q    +AHNA+FD GF+  E +R     +  S ++ T+ ++
Sbjct: 66  AEAPPFAALVETLLEKL--QGRLLLAHNARFDYGFLKNEFKRAGH--VFQSEVLCTVKLS 121

Query: 131 RRKHPSS-RNDLNSLCKRYGITIS--HRSKHGALLDSHLL 167
           RR +P   ++ L+SL  R+GI ++  HR+   AL   H +
Sbjct: 122 RRLYPQHFKHSLDSLIARHGIVLADRHRAMADALAVYHFI 161


>gi|118473161|ref|YP_890494.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
           MC2 155]
 gi|118174448|gb|ABK75344.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
           MC2 155]
          Length = 337

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 11/162 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG      RI+ + A+ + D      +    L P      P    +HG+T E L
Sbjct: 26  VVDVETTGFRPGQARIVSVAALAVGDDGSVEHSMSSLLNPG---VDPGPTHVHGLTAEML 82

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
           + +P F+ +  E  +    +    +AHNA FD  F+ AE + +  + P+D +  + T+ +
Sbjct: 83  EGQPCFADVVDELIEVLRGRT--LVAHNAGFDYSFLAAEAELVGAELPIDTA--MCTVEL 138

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ARR    + N  L +L   +G+T      H AL D+ +L+ +
Sbjct: 139 ARRLELGTENLRLETLAAHWGVT--QMKPHDALDDALVLAQI 178


>gi|194333813|ref|YP_002015673.1| DNA polymerase III subunit epsilon [Prosthecochloris aestuarii DSM
           271]
 gi|194311631|gb|ACF46026.1| DNA polymerase III, epsilon subunit [Prosthecochloris aestuarii DSM
           271]
          Length = 208

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 90/170 (52%), Gaps = 13/170 (7%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITD 67
           +V D ETTGL  +  DR IEIGAV L++  +    FQ  + P  R +S  EA    GIT+
Sbjct: 11  VVLDFETTGLSPQYGDRAIEIGAV-LVEEGRIVDRFQKLMNPGFRISSFIEAYT--GITN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LK +     + ++F +F    N   +AHNA FD  F++ EL+R N+          +L
Sbjct: 68  EMLKGEACCEEVMAQFSEFIAGHNI--VAHNASFDKRFLDFELKRANRSY--EGVCCCSL 123

Query: 128 SIARRKHPSSRND-LNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMM 175
            ++RR +  S N  L +L    G+ TI   S H AL D+ + + +++ M+
Sbjct: 124 LVSRRIYQDSPNHKLQTLVSHAGVPTIG--SFHRALADAEMTAHLWLAMI 171


>gi|144900310|emb|CAM77174.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 459

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 8/173 (4%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLH 63
           +++  +V D ETTGLD+  D I+ +GAV     S+  R   + L  N GR+    A  +H
Sbjct: 253 SQLPVVVLDTETTGLDAARDAIVSVGAVR-CHGSRIYRAAMLDLLVNPGRRIPARATAIH 311

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI +  +  KP  ++   E     ++  A  + H   FD+  +    +R+  D   P R 
Sbjct: 312 GIDESMVAGKPDLAASLPEIAAIMDK--AVVVGHQIGFDLALLRHGTERLGLDWTPPPR- 368

Query: 124 IDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +D L ++    P  S ++++    R G+ IS R  H AL D+ + ++++++++
Sbjct: 369 LDILLLSAALAPDESGHEIDDQAARMGVNISGR--HTALGDALVTAELWVRLI 419


>gi|119945580|ref|YP_943260.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
 gi|119864184|gb|ABM03661.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
          Length = 204

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           ++FD ETTGL  K  DR IEIGAV + +     R FQ  + P G + S       GI+++
Sbjct: 8   VIFDFETTGLSPKMGDRPIEIGAVRIKNGLLVER-FQALMHP-GIRISSFIENFTGISNK 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +    + +   F DF    N   +AHNA FD  F++AEL RI++      +I  ++ 
Sbjct: 66  MLAEAKPCAEVMGRFCDFIGSDN--LVAHNASFDKRFLDAELHRISRG--YSGQISCSML 121

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +ARR    + N  L +L     I  +    H AL DS + ++V++ M+
Sbjct: 122 LARRVLRDAPNHKLGTLVDYLNIQ-TEGVYHRALFDSEMTANVWLAMI 168


>gi|256043519|ref|ZP_05446446.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 224

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 7/172 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172
            +  T+  ARR        L+    + G+    HR  HGAL D++L + +Y+
Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 174


>gi|166032846|ref|ZP_02235675.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC
           27755]
 gi|166027203|gb|EDR45960.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC
           27755]
          Length = 232

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 17/164 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FDIETTGL  +++ IIEIGA+++ +    +R F  F+ P      P   +L GIT++ 
Sbjct: 6   VAFDIETTGLSPEHNEIIEIGALKVREGKVVDR-FIRFIEPEA-GIPPMITQLTGITNDM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDTL 127
           ++   +   +  EF +F        I HN +FD  F+  + + +    D +     IDTL
Sbjct: 64  VEGAGNCGEVLPEFLEFCERDT--LIGHNVQFDFSFVKTKAKELGYTYDHMG----IDTL 117

Query: 128 SIARRKH---PSSRNDLNSLCKRYGI--TISHRSKHGALLDSHL 166
            IA+  H   PS +  L +LC+ Y I    +HR+ H AL  + L
Sbjct: 118 KIAKVVHADLPSRK--LGALCEYYHIENVAAHRAYHDALATAKL 159


>gi|154487101|ref|ZP_02028508.1| hypothetical protein BIFADO_00941 [Bifidobacterium adolescentis
           L2-32]
 gi|154084964|gb|EDN84009.1| hypothetical protein BIFADO_00941 [Bifidobacterium adolescentis
           L2-32]
          Length = 256

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 11/172 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFL 70
            D+ETTG    +DRI+EIGA+ + +     R  Q+    N ++  PE + +L+G+TD  L
Sbjct: 89  IDLETTGFSPSDDRIVEIGAIRVRNGRPVKRYSQLI---NPQRPLPEEITRLNGLTDADL 145

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++P+   +  +F  F    N   I HN  +FD  F+ A   R+    +  ++ IDTL +
Sbjct: 146 RNQPTVDQVLPDFIRFIG--NDTLIGHNINEFDAAFLLANTTRLGMRHIG-NKTIDTLPL 202

Query: 130 ARRKHP-SSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGG 178
            R  +P   ++ L  + +R+GI  T SHR+   AL  +     +   M   G
Sbjct: 203 DRALYPEEPKHRLVDIIRRFGIAQTESHRAADDALQTAQCYETMKAYMKANG 254


>gi|186475443|ref|YP_001856913.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815]
 gi|184191902|gb|ACC69867.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815]
          Length = 392

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 21/172 (12%)

Query: 10  IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IVF D+ETTG    + RI E+G VE+     ++ T    L   G+   P   +L GIT++
Sbjct: 15  IVFVDLETTGGSVGDHRITEVGVVEVGPNGVSSWTT---LVDPGQPIPPFIQQLTGITND 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQR----INKDPLDPSRI 123
            ++  P+F +I +   D F   + + +IAHNA FD GF+ +E QR     N D      +
Sbjct: 72  MVRGAPTFEAIAA---DLFARLDGKLFIAHNASFDRGFLRSEFQRAGFAFNPD------V 122

Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + T+ ++R   P+  R+ L++L +R+ +  S R  H AL D+ LL   + ++
Sbjct: 123 LCTVRLSRALFPAEKRHGLDALVERHALMPSDR--HRALADADLLWQFWQRL 172


>gi|227872422|ref|ZP_03990766.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
 gi|227841719|gb|EEJ52005.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
          Length = 821

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG D + + IIEIGAV++ +    +R   VF+ P G        +L  I D  
Sbjct: 519 VVFDLETTGFDPRVNHIIEIGAVKIENGKIIDR-MDVFVNP-GVPIPFRITQLTSIDDSM 576

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D      +  +F DF   ++A  +AHNA FD  F++ + + +N     P  +IDT+++
Sbjct: 577 VMDAKGIEEVLPQFLDF--AKDAILVAHNADFDYHFVSTKAKALNIPFSAP--VIDTVAL 632

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R   P  +R  L+++ K   I + H   H A+ D+   + +Y+K +
Sbjct: 633 SRLLLPRLNRFKLDTVAKELKIELLHH--HRAVDDAEATARIYLKEL 677


>gi|152990071|ref|YP_001355793.1| DNA polymerase III subunit epsilon [Nitratiruptor sp. SB155-2]
 gi|151421932|dbj|BAF69436.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2]
          Length = 276

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 93/168 (55%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V DIET G   +  ++IEIGA++    +  +R F+ F+     ++ PE + KL GI  E
Sbjct: 71  VVVDIETNGSKPEFSQVIEIGAIKFKGNTIIDR-FESFIYA---EDVPEYISKLTGILQE 126

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ PS   +   F +F   Q+A ++AHN +FD  FI+++L+++  + L  +R + ++ 
Sbjct: 127 DLENAPSQKEVLLSFKEFL--QDAVFVAHNVRFDYNFISSKLEQLGLEKL-ANRKLCSID 183

Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKM 174
           +AR+   S R  L  L +  GI   +SHR+   AL    +L   + K+
Sbjct: 184 LARKTIESERYGLEFLNETLGINTAVSHRAYADALTAYKILQMSFEKL 231


>gi|296129915|ref|YP_003637165.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM
           20109]
 gi|296021730|gb|ADG74966.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM
           20109]
          Length = 631

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 12/184 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG  +  D I EIGAV++         FQ  + P G    P    L GIT   
Sbjct: 65  VVVDLETTGGRAAEDAITEIGAVKVRGGEVLGE-FQTLVDPGG-PVPPFIQVLTGITTSM 122

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P+   +   F +F   + A  +AHNA FDVGF+ A   R  +      +++DT+ +
Sbjct: 123 LVGAPTIGEVLPSFLEF--ARGAVLVAHNAPFDVGFLRAAAARSERA-WPGFQVVDTVRL 179

Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           ARR   +  +  + L++L   +G T++    H AL D+    DV   ++  G     G  
Sbjct: 180 ARRVVLRDEAPNHKLSTLAALFGATVT--PNHRALADARATVDVLHALL--GRLAPLGVT 235

Query: 187 TNED 190
             ED
Sbjct: 236 HLED 239


>gi|154505436|ref|ZP_02042174.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149]
 gi|153794279|gb|EDN76699.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149]
          Length = 219

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTG+ +  D IIEI AV++        TF   + P GR    +A K++GITD+ +
Sbjct: 17  VFDLETTGISANMDDIIEISAVKVKG-GIVQDTFSTLVNP-GRHIPAQATKVNGITDQMV 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSI 129
            + P      +EF  F  E     + HN + FD+ FI  E++ + ++ +  +  IDTL +
Sbjct: 75  SEAPLIREAMTEFLRFVGEDI--LVGHNIQSFDMKFIYREVEELFQETVS-NDFIDTLYM 131

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           AR+  P  ++  L  L + +G  IS +  H AL D  +    + +M
Sbjct: 132 ARKCLPELKHHRLTDLAEHFG--ISSKGAHRALNDCVMNQKCFEEM 175


>gi|28210814|ref|NP_781758.1| DNA polymerase III subunit epsilon [Clostridium tetani E88]
 gi|28203252|gb|AAO35695.1| DNA polymerase III alpha subunit [Clostridium tetani E88]
          Length = 380

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 9/164 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           +V D+ETTGL    D+IIEI A++   Y       +     N + N P+ A +++ IT+ 
Sbjct: 85  VVIDLETTGLYPVTDKIIEITAIK---YKSGQIVEKYNTLINPKINIPKRATEINNITNN 141

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  E   F  E     +AHNA FD+ F+NA L  IN++  + +  IDTL 
Sbjct: 142 MVKDSPVIEDVLPELLKFIKEY--PLVAHNASFDIKFLNANLALINREIKNVA--IDTLQ 197

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           ++R  +    N   +  K + + IS  + H AL D    +++Y+
Sbjct: 198 LSRAMYTFLPNHKLTTIKEH-LCISEDNSHRALPDCITTAEIYL 240


>gi|291561902|emb|CBL40706.1| exonuclease, DNA polymerase III, epsilon subunit family
           [butyrate-producing bacterium SS3/4]
          Length = 247

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 84/163 (51%), Gaps = 9/163 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG+ +++++I EIG V+++D  +T  T+   + P+ R+     ++L GITD+ 
Sbjct: 10  VALDLETTGIGARHEKITEIGMVKVID-GETTDTYHTMVNPH-REIPKRIVELTGITDDM 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P    I  E   F   ++   + H   FD GF+      +N+        +DTL +
Sbjct: 68  VKDAPGIEEILDEVLAF--TEDLPLLGHQIIFDYGFLVQ--AAVNQKRKFEKYGVDTLKL 123

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            R   P   + +L++ C  + +T    + H AL D++   ++Y
Sbjct: 124 CRYLMPGEEKKNLSAACAYFEVT--QDTAHRALSDAYAAHNLY 164


>gi|323496243|ref|ZP_08101301.1| DNA polymerase III, alpha subunit [Vibrio sinaloensis DSM 21326]
 gi|323318520|gb|EGA71473.1| DNA polymerase III, alpha subunit [Vibrio sinaloensis DSM 21326]
          Length = 204

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV+L++    + TFQ  + P G + S       GIT++
Sbjct: 8   VVLDFETTGLSPNMGDRAIEIGAVKLVNGEVVD-TFQQLMNP-GFRVSAFIEGYTGITNQ 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   PS   + +EF DF   +N   +AHNA FD  F++ EL+R+            +L 
Sbjct: 66  MLSGAPSCDEVMTEFADFIRGEN--LVAHNASFDKRFLDDELERVKVAY--RGEFACSLL 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           I+RR H  + +       RY    +    H AL D+ + + +++ M+
Sbjct: 122 ISRRLHQDAPSHKLGDIVRYKHIENDGVFHRALADAQVTAKLWMVMV 168


>gi|149376092|ref|ZP_01893858.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
 gi|149359729|gb|EDM48187.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
          Length = 483

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 85/155 (54%), Gaps = 13/155 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIETTG +  +DRI EIG +           +Q  + P  R  SP    L GIT++ + 
Sbjct: 16  LDIETTGGNPSHDRITEIG-IRFWRAGAVVGEWQTLVNPETRI-SPFIESLTGITNDMVA 73

Query: 72  DKPSFSSIFSEFWDFFNEQ--NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           D P    +F +  +   +Q  +  ++AHNA+FD GFI AE +R+    L  ++++ T+ +
Sbjct: 74  DAP----VFEDIAEVLEKQLKDTIFVAHNARFDYGFIKAEFRRLGL--LFSAKVLCTVKL 127

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163
           +R+ +P   R+++++L +R+G+    R  H AL D
Sbjct: 128 SRKLYPGFRRHNMDALIERHGLEQVQR--HRALGD 160


>gi|323340059|ref|ZP_08080325.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
 gi|323092565|gb|EFZ35171.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
          Length = 1448

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD ETTGL ++ +++IE+ AV++ D  K    F+ F+ P G   S   + L  ITD  
Sbjct: 429 VVFDTETTGLSAQYNKVIELAAVKMKDGEKIGE-FEEFIDP-GHPLSQTTINLTHITDAM 486

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++   +   +F  F +F   +    + HNA FDV F+N    R +  P      +DTL +
Sbjct: 487 VRGSKTEEEVFKLFREFC--KGCIIVGHNATFDVDFMNTGYLR-HGMPEIKEPWVDTLPL 543

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           AR  +    R  L++L KR  + + H   H A+ D+     ++ KM+ 
Sbjct: 544 ARILYSDMKRFTLDTLAKRLKVDLEHH--HRAIYDAEATGYIFYKMLA 589


>gi|237654602|ref|YP_002890916.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237625849|gb|ACR02539.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 502

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 91/164 (55%), Gaps = 12/164 (7%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           DIETTG  ++ + I EIG V++ +     R +   + P  R   PE + +L GI D+ + 
Sbjct: 16  DIETTGGPAQRESITEIGIVQVDE--DGVREWSTLVRPASR--IPETIQRLTGIDDDMVA 71

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D P F  I  E +D  + +   ++AHNA+FD G + A  +R   D + P +++ T+ ++R
Sbjct: 72  DAPRFEDIADEVFDRLDGRL--FVAHNARFDHGHLRAAFRRAGLD-MRP-QVLCTVKLSR 127

Query: 132 RKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           R  P   R+ L+ L +R+G+ ++ R  H AL D+ LL   + K+
Sbjct: 128 RLFPDHRRHGLDHLIERHGLAVADR--HRALGDARLLWQFWQKI 169


>gi|157375547|ref|YP_001474147.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157317921|gb|ABV37019.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 208

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL  ++ DR IEIGAV+L D    + TFQ  + P G + S       GIT+ 
Sbjct: 10  IVLDFETTGLSPNQGDRAIEIGAVKLQDGIVVD-TFQELMNP-GFRVSGFIEGYTGITNA 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P  + + ++F  F    N   +AHNA FD  F++AEL  I +          ++ 
Sbjct: 68  MLNSAPPCNEVMAQFAGFIGNDN--LVAHNASFDKRFLDAELDGIGRTY--GGEFACSML 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IARR + ++ N        Y    +    H AL DS + + +++KM+
Sbjct: 124 IARRLYQAAPNHKLGGLVEYKQIENDGVFHRALADSEVTAKLWLKML 170


>gi|311741608|ref|ZP_07715431.1| epsilon subunit family exonuclease [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303272|gb|EFQ79352.1| epsilon subunit family exonuclease [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 221

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 13/159 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLHGITDE 68
           V D ETTG + + DRIIE+ AV    +     ++   L P+G+  KNS     +HGIT++
Sbjct: 23  VIDTETTGFNKRYDRIIELAAVRADSHFNPIDSWHTLLNPDGKAIKNS----HIHGITND 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR---IID 125
            +   P+FS ++ +F  + +    +  AHNA FD   I AE+ R+     D       ID
Sbjct: 79  MVVTAPTFSEVYGDFTSYID--GMQLFAHNAPFDSKMIVAEVDRMTGGDNDGDEFFPFID 136

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           T+ +A++       +L +L  R G  + +   H A+ D+
Sbjct: 137 TIDLAKQMLDCGPYNLPALLDRLG--LDNPDAHAAVADA 173


>gi|126174568|ref|YP_001050717.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155]
 gi|125997773|gb|ABN61848.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155]
          Length = 208

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 12/197 (6%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  ++ DR IEIGAV + D   T R F   + P G + S       GI+++
Sbjct: 10  VVLDFETTGLSPNQGDRAIEIGAVLIEDGVITQR-FSELMNP-GFRISRFIEDYTGISNQ 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D    + + + F DF  + N   +AHNA FD  F++AE  +I    L   +   +L 
Sbjct: 68  MLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYL--GQFGCSLL 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +ARR + ++ N       RY    +  + H AL D+ +   +++ M+    Q  FG  + 
Sbjct: 124 VARRLYQAAPNHQLGTLVRYKQLPTDGTFHRALADAEMTGHLWLAMLADLQQ-EFGLCSP 182

Query: 189 E----DRFFKEEKKTVP 201
                 +  K+ K  VP
Sbjct: 183 TFELLQKLAKKTKAEVP 199


>gi|301167913|emb|CBW27498.1| putative DNA polymerase III PolC-type [Bacteriovorax marinus SJ]
          Length = 438

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 15/185 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLH 63
           N +   VFD+ETTG + K+D+IIEIG V++ ++   ++     + P  +   PE + KL 
Sbjct: 9   NNLEFCVFDLETTGGNHKSDKIIEIGLVKIKNFEVIDQK-NYLIQPEIK--IPEFIQKLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I +E +KD P    +  E   F  +  +  +AHN  FDV F N+ L+R+ K  L    +
Sbjct: 66  SIKEEDVKDSPVIEDVIDEILKFMGD--SILVAHNTSFDVPFFNSVLKRLGKPQLKNKSL 123

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMV--G 177
              L + +   P+  N +LN + K +G  I H+  H AL D+   ++   +Y+K+ +  G
Sbjct: 124 CTNL-MTKYLIPNLMNSNLNYMSKIFG--IKHKKAHRALDDALATAELLLIYLKIYIDKG 180

Query: 178 GSQIN 182
            ++IN
Sbjct: 181 ITKIN 185


>gi|170016990|ref|YP_001727909.1| DNA polymerase III, alpha subunit [Leuconostoc citreum KM20]
 gi|169803847|gb|ACA82465.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc
           citreum KM20]
          Length = 1437

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL +  D+IIE+ AV++   +  ++ F  ++ P G   S    +L  ITD  
Sbjct: 420 VAFDLETTGLSAVTDKIIELSAVKMQMGNVIDK-FSEYINP-GFPLSDFTTELTSITDAM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + +  +  SI S F  +   ++A  + HN  FD+GF+NA   R N+ P   + IIDTL  
Sbjct: 478 VANADTEESIVSRFRAWV--RDAILVGHNVTFDIGFMNAAYSRYNQ-PDISNPIIDTLPF 534

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
            R  +P  ++  L ++ KR+ I +     H A+ DS
Sbjct: 535 TRWLYPDYKSYRLGTIAKRFNINLEQ--AHRAIFDS 568


>gi|86137282|ref|ZP_01055859.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. MED193]
 gi|85825617|gb|EAQ45815.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. MED193]
          Length = 484

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 9/174 (5%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N++   VFD ETTGL    D I++IGAV +L+           L   GR     + ++HG
Sbjct: 273 NQLCFAVFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDPGRPIPEASTRVHG 332

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSR 122
           ++   ++  P  +   +EF  F    +A  +AHNA FD+ F+  +A+   +  D      
Sbjct: 333 VSTAMVQGAPDIAEAAAEFHLF--ATDAVIVAHNAPFDMAFLRRHAKASGLAWD----HP 386

Query: 123 IIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           I+DT+ ++     +S  + L++LC+R  ITI    +H AL D+   +   ++M+
Sbjct: 387 ILDTVLLSAVLFGASVPHTLDALCERLDITIPPALRHTALGDAQATACALVQMI 440


>gi|325983091|ref|YP_004295493.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
 gi|325532610|gb|ADZ27331.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
          Length = 463

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 85/160 (53%), Gaps = 9/160 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+ETTG+    DRI EIG +   +  +T R +   + P G    P   +L GIT + 
Sbjct: 9   VLLDLETTGVTPTQDRITEIGLIRYENGVETGR-WNTLINP-GINIPPFIQRLTGITQDM 66

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P+FS ++     + ++  A   AHNA+FD GF+  E +RI        +++ T+ +
Sbjct: 67  VDHAPTFSQVYETLLQWLDQ--AVLCAHNARFDYGFLKNEFKRIGVT--FQKKLLCTVKL 122

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           +R+ +P    + LN++ +R+ +    R  H A+ D+ +++
Sbjct: 123 SRKLYPQHHSHSLNAIIERFRLICDQR--HRAMGDTEMIA 160


>gi|257094042|ref|YP_003167683.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046566|gb|ACV35754.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 484

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 92/167 (55%), Gaps = 10/167 (5%)

Query: 7   MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +  +VF D+ET+G +  +DR+IE+G VE+   +   R + V + P     SP   +L GI
Sbjct: 9   LEPLVFVDLETSGANFASDRVIEVGLVEV--DADGVREWSVLVNPEA-PISPFITRLTGI 65

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D  +   P+F  +          +    +AHNA+FD GF+  E +R+  +   P+  + 
Sbjct: 66  DDAMVGSAPTFRQLAPT--LLDRLRGRLLVAHNARFDYGFLQCEFKRLGVEFRTPT--LC 121

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           T+ ++R+  P   R++L++L  R+G+ ++  ++H AL D+ +L +++
Sbjct: 122 TVKLSRKLFPEHHRHNLDALVTRHGLKVAG-NRHRALADARILWELW 167


>gi|223040436|ref|ZP_03610710.1| mature parasite-infected erythrocyte surface antigen [Campylobacter
           rectus RM3267]
 gi|222878286|gb|EEF13393.1| mature parasite-infected erythrocyte surface antigen [Campylobacter
           rectus RM3267]
          Length = 289

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDEF 69
           V DIET+G    + +IIEIGA++L +     + F+ F+  P   +N  E   L GIT E 
Sbjct: 75  VVDIETSG-GINSGQIIEIGALKLQNGEIIGK-FETFVHAPYVPENISE---LTGITAEH 129

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LK+ P+ + +  +F  F  +  + ++AHN +FD GFI A L+ +    L   R+  T+ +
Sbjct: 130 LKNAPNLAFVMEKFKVFLGQ--SVFVAHNVRFDYGFIGATLEALGYGELLNHRLC-TIDL 186

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           ARR   S +  L +L +  GI  +H   H AL D+   ++++
Sbjct: 187 ARRTIASPKYGLGTLKEILGINNAH---HRALSDAIAAAEIF 225


>gi|153000864|ref|YP_001366545.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185]
 gi|160875572|ref|YP_001554888.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195]
 gi|151365482|gb|ABS08482.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185]
 gi|160861094|gb|ABX49628.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195]
 gi|315267759|gb|ADT94612.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678]
          Length = 208

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 12/197 (6%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  ++ DR IEIGAV + D   T R F   + P G + S       GI+++
Sbjct: 10  VVLDFETTGLSPNQGDRAIEIGAVLIEDGVITQR-FSELMNP-GFRISRFIEDYTGISNQ 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D    + + + F DF  + N   +AHNA FD  F++AE  +I    L   +   +L 
Sbjct: 68  MLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYL--GQFGCSLL 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +ARR + ++ N       RY    +  + H AL D+ +   +++ M+    Q  FG  + 
Sbjct: 124 VARRLYQAAPNHQLGTLVRYKQLPTDGTFHRALADAEMTGHLWLAMLADLQQ-EFGLCSP 182

Query: 189 E----DRFFKEEKKTVP 201
                 +  K+ K  VP
Sbjct: 183 TFELLQKLAKKTKAEVP 199


>gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1]
 gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum
           Rt17-B1]
          Length = 1390

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL+ ++D I+EIGAV+  D  K    F  F+ PN  K + ++L + GIT++ 
Sbjct: 384 VVLDLETTGLNPRSDEIMEIGAVKTRD-GKVIDEFHTFVRPN--KLNKKSLNITGITEDM 440

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LKD P    +  +  +F   +++  +AHNA FD+ F+   L +   +   P   IDTL +
Sbjct: 441 LKDAPDIMQVLPKLLEFI--KDSILVAHNADFDMTFLKNILSKSGIEFNPP--YIDTLRL 496

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++   ++      L+ L   +G+       H AL D+ +  +V+ K++
Sbjct: 497 SQALLRNKIKSFSLDKLVDHFGLGAFQH--HRALDDARVTVNVFWKLI 542


>gi|284048335|ref|YP_003398674.1| DNA polymerase III, epsilon subunit [Acidaminococcus fermentans DSM
           20731]
 gi|283952556|gb|ADB47359.1| DNA polymerase III, epsilon subunit [Acidaminococcus fermentans DSM
           20731]
          Length = 223

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 82/170 (48%), Gaps = 11/170 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP----NGRKNSPEALKLHGI 65
           +V D+ETTGLD + D+IIEIGA+E +   K  RTF   L P     G+  SP   +L GI
Sbjct: 26  VVVDLETTGLDPERDQIIEIGALE-VTAGKRGRTFSTLLQPRTPLEGQYVSPFITRLTGI 84

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+E L   P        F  F   + A  + +N  FD+GF+  + Q     PL  +  +D
Sbjct: 85  TNEMLAAAPQPRQALEAFGKFLGSRVA--VGYNVGFDMGFLQQQFQDQLYRPL-ANDWVD 141

Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            L +A+   P    + LN+L   Y   + ++  H AL D       + K+
Sbjct: 142 VLPMAQTLFPLWDHHRLNNLAAWY--HVENKEAHRALSDVETTETCFRKL 189


>gi|315446380|ref|YP_004079259.1| DNA polymerase III subunit epsilon [Mycobacterium sp. Spyr1]
 gi|315264683|gb|ADU01425.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. Spyr1]
          Length = 333

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RI+ + A+ L D     ++    L P      P    +HG+T E L
Sbjct: 22  VVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPG---VDPGPTHVHGLTAEML 78

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
           + +P+F  +  +  +    +    +AHN  FD  F++AE + +  + P+D   ++ T+ +
Sbjct: 79  EGQPTFGDVVGDLCEVLRGRT--LVAHNVGFDYSFLSAEAELVGAELPID--TVMCTVEL 134

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ARR      N  L +L   +G+T      H AL D+ +L+ +   ++V
Sbjct: 135 ARRLDLGLENLRLETLAAHWGVT--QMRPHDALDDAMVLAQILKPVLV 180


>gi|291279025|ref|YP_003495860.1| hypothetical protein DEFDS_0623 [Deferribacter desulfuricans SSM1]
 gi|290753727|dbj|BAI80104.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 247

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 105/191 (54%), Gaps = 17/191 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETTGLD +  ++I I AV+++++ K    + VF+ P       E++K HGITD+ +
Sbjct: 65  VIDTETTGLDFETAKLINIAAVKVVNF-KILDIYDVFINPE-IPIPEESIKWHGITDDMV 122

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KDKP+ + I  +F  F   +++  + H+  FD+  IN +L+      +  +  IDT+ + 
Sbjct: 123 KDKPTVAEILPDFLKFI--RDSVIVGHHVNFDLKMINKDLKLYYGSEI-KNIWIDTMFL- 178

Query: 131 RRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
             K+   R+D   L+ L +++ +    R  H AL D+   ++V+ K++V   ++  GFKT
Sbjct: 179 YSKNILCRDDHISLDFLLEKFNVKCIGR--HTALGDALATAEVFNKIVV---KMKNGFKT 233

Query: 188 NEDRF---FKE 195
             D +   FKE
Sbjct: 234 VSDLYRSQFKE 244


>gi|126665661|ref|ZP_01736642.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17]
 gi|126629595|gb|EBA00212.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17]
          Length = 483

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 79/147 (53%), Gaps = 7/147 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ETTG     DRI EIG ++     +    +Q  + P  R  SP   +L GI++  + 
Sbjct: 16  LDLETTGGSVATDRITEIG-IQFWRAGECVGQWQTLVNPKTRI-SPFIEQLTGISNAMVA 73

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D P F  I  E     +     ++AHNA+FD GF+  E +R+ +  +  ++++ T+ ++R
Sbjct: 74  DAPLFEDIADELEQRLD--GVVFVAHNARFDYGFVKGEFRRLGR--MFVAKVLCTVKLSR 129

Query: 132 RKHPS-SRNDLNSLCKRYGITISHRSK 157
           R +P   R+++++L +R+G+    R +
Sbjct: 130 RLYPEFRRHNMDALIERHGLQQVQRHR 156


>gi|269968192|ref|ZP_06182223.1| hypothetical protein VMC_36530 [Vibrio alginolyticus 40B]
 gi|269827190|gb|EEZ81493.1| hypothetical protein VMC_36530 [Vibrio alginolyticus 40B]
          Length = 204

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 13/172 (7%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV+L++    + +FQ  + P G + S        IT+ 
Sbjct: 8   VVLDFETTGLSPTLGDRAIEIGAVKLVNGEVVD-SFQQLMNP-GFRVSSFIENYTSITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  PS   + + F +F   +N   +AHNA FD  F++AEL+RIN           +L 
Sbjct: 66  MLRSAPSCEEVMASFSEFIAGEN--LVAHNASFDKRFLDAELERINCG--SSGEFACSLL 121

Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +ARR   + PS +  L  L  RY    +    H AL D+ + + +++ M+ G
Sbjct: 122 VARRLIQEAPSHK--LGELV-RYKNIDNDGVFHRALADAQMTAKLWLLMVEG 170


>gi|312883799|ref|ZP_07743518.1| DNA polymerase III, alpha subunit [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368548|gb|EFP96081.1| DNA polymerase III, alpha subunit [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 204

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 87/176 (49%), Gaps = 25/176 (14%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV+L+D  +   +FQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPNMGDRAIEIGAVKLVD-GQVVDSFQRLMNP-GFRVSTFIEGYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  PS   + + F  F   +N   IAHNA FD  F++AEL+R+N           +L 
Sbjct: 66  MLRTAPSCDEVMTSFSQFIAGEN--LIAHNASFDKRFLDAELERVNCGY--SGEFACSLL 121

Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSK------HGALLDSHLLSDVYIKMM 175
           +ARR     PS          + G  + HR+       H AL D+ + + +++ M+
Sbjct: 122 VARRLIQDAPS---------HKLGELVRHRNIENDGVFHRALADAQVTAKLWLLMV 168


>gi|328544128|ref|YP_004304237.1| DNA polymerase III, epsilon subunit [polymorphum gilvum
           SL003B-26A1]
 gi|326413871|gb|ADZ70934.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 719

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 20/179 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPE-ALKLHGITD 67
           +V D ETTGLD ++DRI++IGAV +          F+V + P      PE A ++HG+ D
Sbjct: 21  VVLDTETTGLDVRHDRIVQIGAVRMHGAEIDETAVFEVTVDPG--IPIPEVASRIHGLAD 78

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSRII 124
             +  KP  +++  +   F    +A  + H+  FD+  +  E +R   + K+P    R +
Sbjct: 79  ADVAGKPGLAAVMPDLVAFIG--DAVVVGHSIHFDMAVLRHEAERHGFVWKEP----RAL 132

Query: 125 D-TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI----KMMVGG 178
           D  L  A          L+SL    G+TI+ R  H AL D+   + VY     K++VGG
Sbjct: 133 DVALMAAGLDRELVDTSLDSLALGLGVTITGR--HTALGDALATARVYAALQPKLLVGG 189


>gi|145221884|ref|YP_001132562.1| DNA polymerase III subunit epsilon [Mycobacterium gilvum PYR-GCK]
 gi|145214370|gb|ABP43774.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK]
          Length = 345

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RI+ + A+ L D     ++    L P      P    +HG+T E L
Sbjct: 34  VVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPG---VDPGPTHVHGLTAEML 90

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
           + +P+F  +  +  +    +    +AHN  FD  F++AE + +  + P+D   ++ T+ +
Sbjct: 91  EGQPTFGDVVGDLCEVLRGRT--LVAHNVGFDYSFLSAEAELVGAELPID--TVMCTVEL 146

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ARR      N  L +L   +G+T      H AL D+ +L+ +   ++V
Sbjct: 147 ARRLDLGLENLRLETLAAHWGVT--QMRPHDALDDAMVLAQILKPVLV 192


>gi|318060238|ref|ZP_07978961.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318076974|ref|ZP_07984306.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
          Length = 647

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 9/162 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ET+GL ++ DR++ +  V +    +    F   + P      P  + +HG+T E L
Sbjct: 18  LVDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTLVDPG---CDPGPVDVHGLTRERL 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P+F  I          Q+   +AHNA+FD  F+  E  R     L  +R + TL++ 
Sbjct: 75  SGAPAFGQIAGRLGAML--QDRVLVAHNAQFDYDFLAHEFARARLY-LPVTRRLCTLALN 131

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           R+  P +R+  L SL   YG+  +    H AL D+ +L+ ++
Sbjct: 132 RQVDPPTRDMKLGSLAAHYGVPRTR--AHDALDDTRVLAGIF 171


>gi|306845957|ref|ZP_07478524.1| DNA polymerase III, epsilon chain [Brucella sp. BO1]
 gi|306273592|gb|EFM55437.1| DNA polymerase III, epsilon chain [Brucella sp. BO1]
          Length = 235

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 5/171 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGDELLTQSLYLIFDPR-KDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  IHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDIHYIQREFRKAEVDMLD-Q 124

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +  T+  ARR        L+    + G+  +   +HGAL D++L + +Y+
Sbjct: 125 PVYCTMEGARRLWRGDSAKLDHCLAKIGLARTG-YRHGALEDAYLTAGLYL 174


>gi|284931104|gb|ADC31042.1| DNA polymerase III alpha subunit polC/Gram positive-type
           [Mycoplasma gallisepticum str. F]
          Length = 1494

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 96/189 (50%), Gaps = 14/189 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVF-------LCPNGR 53
           ++ +K+  ++FDIETTGL++  ++IIEI AV +  + ++TN   +         L  N +
Sbjct: 403 LKLDKLSFVIFDIETTGLNAYYEQIIEIAAVRVKAELNETNHQLEFVQLGKFEKLIKNEK 462

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQR 112
             S    +L G+ D  LKD     ++  EF +F  + +   +AHN   FD  +IN +L +
Sbjct: 463 PLSKFTTQLTGLKDSDLKDAQDEKTVLEEFANFIQKDDV-LVAHNGIDFDFIWINTKLDK 521

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               PLD + ++D+L +A + +   R  L +L  + G        H A  D+ LL+    
Sbjct: 522 YKLKPLD-NPMLDSLRLAYQLYQFKRYTLENLSLKLGYEYDKTLAHRANYDTELLAKC-- 578

Query: 173 KMMVGGSQI 181
            +M+  SQI
Sbjct: 579 -LMIMLSQI 586


>gi|237785314|ref|YP_002906019.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758226|gb|ACR17476.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 616

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 5/122 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL +  DRIIEIGAV++    + +R F  F+ P GR   P    + GI+D+ 
Sbjct: 35  VVVDLETTGLSAHEDRIIEIGAVKIHGGEEISR-FSTFVDP-GRLIPPLITNITGISDDD 92

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  +    +F +F   +    +AHNA+FD+GF+ A   R +     P+ +  TL +
Sbjct: 93  VNGAPKEAQAVKDFLEF--ARGTVLVAHNARFDIGFLQAASMRAHITWPQPTHLC-TLVL 149

Query: 130 AR 131
           AR
Sbjct: 150 AR 151


>gi|148973897|ref|ZP_01811430.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3]
 gi|145965594|gb|EDK30842.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3]
          Length = 213

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 14/206 (6%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL  +  DR IEIGAV+L++    + TFQ  + P G + S       GIT+ 
Sbjct: 10  IVLDFETTGLSPNMGDRAIEIGAVKLVNGEVVD-TFQQLMNP-GFRVSGFIEGYTGITNR 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L    S   +  EF DF   Q+++ +AHNA FD  F++AEL  I +D     +   ++ 
Sbjct: 68  MLSTAASCGEVMDEFADFI--QDSQLVAHNASFDKRFLDAELDYIGRDY--NGQFACSML 123

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           IARR    +  + L  L  R+    +  + H AL DS + + +++ +M+   Q + G   
Sbjct: 124 IARRLIQDAPTHKLGDLV-RFKSIDNDGTFHRALADSEMTARLWL-LMIDELQSDHGIHQ 181

Query: 188 NE----DRFFKEEKKTVPNISLLKRD 209
                  +  K  K  +P + +  RD
Sbjct: 182 PSFQLMQKISKTAKGAIPKLLMSSRD 207


>gi|291540867|emb|CBL13978.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis XB6B4]
          Length = 235

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 11/164 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D+E TGL++K D I+E+GAV + ++   ++ F   LC N +   PE + +L GIT+ 
Sbjct: 5   VVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDK-FGAILCQNVK--IPEKVTELTGITEA 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++          +F++F  E     +  N  FD GF+       N  PL+    +DTL 
Sbjct: 62  MVQGGMEKEEAMRQFFEFIGEDII--VGQNVIFDYGFLKQWAVNHNM-PLE-RNAVDTLK 117

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +AR+  P   + DL SLC  +G  +   + H A  D++    VY
Sbjct: 118 LARKFLPKEQKKDLESLCACFG--VKRENAHRAFDDAYETWQVY 159


>gi|167854538|ref|ZP_02477319.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Haemophilus parasuis 29755]
 gi|219872178|ref|YP_002476553.1| ribonuclease T [Haemophilus parasuis SH0165]
 gi|167854293|gb|EDS25526.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Haemophilus parasuis 29755]
 gi|219692382|gb|ACL33605.1| ribonuclease T [Haemophilus parasuis SH0165]
          Length = 216

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 20/190 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN- 55
           KN+ R    +V D+ET GL+++ D ++EI A+ L +D   Y   +  F   + P    N 
Sbjct: 13  KNRFRGYLPVVVDVETGGLNAQTDALLEIAAITLKMDDDGYLHLDEKFHRHVKPFENANI 72

Query: 56  SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107
           +PEALK++GI  D   +         +E +    +       Q A  +AHNA FD  F+ 
Sbjct: 73  NPEALKVNGIDVDNAERGAVPEDIAITEMFKMVRKAVKDNGCQRAVIVAHNATFDQAFLQ 132

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A ++RIN  +DP  P  + DT ++A   +   +  L   C+   I    +  H AL D+ 
Sbjct: 133 AAVKRINTKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAQIPFDGKQAHSALYDTE 190

Query: 166 LLSDVYIKMM 175
             ++++  M+
Sbjct: 191 RTAELFCAMV 200


>gi|326791606|ref|YP_004309427.1| DNA polymerase III subunit alpha [Clostridium lentocellum DSM 5427]
 gi|326542370|gb|ADZ84229.1| DNA polymerase III, alpha subunit [Clostridium lentocellum DSM
           5427]
          Length = 1468

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 15/170 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFD+ETTG   K +RIIEIGAV+++   +   TF  F+ P  +   P  + KL GI D 
Sbjct: 443 VVFDLETTGFSPKMNRIIEIGAVKVVG-GQIVDTFSEFVNP--KVPIPYQIEKLTGINDR 499

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDT 126
            + +  +   +  +F  F   +    +AHNA FD+ FI  NA+ Q +  D      ++DT
Sbjct: 500 MVMEAETIEVLLPQFLAFC--EGCVMVAHNADFDMSFIEANAKEQGLAAD----FTVMDT 553

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +++AR   P   N  LN++ K   + IS  + H A+ D+    +++++ +
Sbjct: 554 VALARILMPHLGNFKLNNVAKH--LDISLENHHRAVDDATATGEIFVRFI 601


>gi|167041229|gb|ABZ05986.1| putative exonuclease [uncultured marine microorganism
           HF4000_001N02]
          Length = 299

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 7/148 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGIT 66
           R + FD+ETTGLD++ DRI++   +   D   ++      + P  R+  P A  ++HGI+
Sbjct: 38  RVLGFDLETTGLDARKDRIVQYALIGS-DVDGSHINLASLVDP--RRGIPTAASRIHGIS 94

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIID 125
           +E ++   SF +      +    ++A  + HN + FD  F+  E  R   +   P  I+D
Sbjct: 95  EEDVRGVGSFETHVGAISELI--EDAVIVGHNISNFDWRFLELECMRAGVETPIPRAIVD 152

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITIS 153
           T S+AR+     R  L  LC RY I+I 
Sbjct: 153 TYSLARKLRIPGRRTLGVLCARYDISIG 180


>gi|34496475|ref|NP_900690.1| DNA-directed DNA polymerase III subunit epsilon [Chromobacterium
           violaceum ATCC 12472]
 gi|34102328|gb|AAQ58694.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Chromobacterium violaceum ATCC 12472]
          Length = 481

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 10/155 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTG +   DRI E+G V L+D  +  R    +L   G+   P    + GI++E +
Sbjct: 8   IIDLETTGGNIARDRITEVGMV-LIDGERVERL--SWLVNPGQPIPPFIENMTGISNEMV 64

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P FS+   E  D    Q    +AHNA+FD GF+  E +R        +R + T+ ++
Sbjct: 65  AGAPPFSAQADELLDRL--QGRLLLAHNARFDYGFLKNEFRRHGLR--FQARALCTVKLS 120

Query: 131 RRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDS 164
           RR +P   ++ L+SL  R+GI +  R  H AL D+
Sbjct: 121 RRLYPQHFKHSLDSLIARHGIDMPER--HRALADA 153


>gi|291535622|emb|CBL08734.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis M50/1]
          Length = 235

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 11/164 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D+E TGL++K D I+E+GAV + ++   ++ F   LC N +   PE + +L GIT+ 
Sbjct: 5   VVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDK-FGAILCQNVK--IPEKVTELTGITEA 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++          +F++F  E     +  N  FD GF+       N  PL+    +DTL 
Sbjct: 62  MVQGGMEKEEAMRQFFEFIGEDII--VGQNVIFDYGFLKQWAVNHNM-PLE-RNAVDTLK 117

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +AR+  P   + DL SLC  +G  +   + H A  D++    VY
Sbjct: 118 LARKFLPKEQKKDLESLCACFG--VKRENAHRAFDDAYETWQVY 159


>gi|193212860|ref|YP_001998813.1| DNA polymerase III subunit epsilon [Chlorobaculum parvum NCIB 8327]
 gi|193086337|gb|ACF11613.1| DNA polymerase III, epsilon subunit [Chlorobaculum parvum NCIB
           8327]
          Length = 208

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 9/177 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M R +    +V D ETTGL  +  DR IEIGAV L +    +R FQ  + P G + SP  
Sbjct: 1   MQRASADSVVVLDFETTGLSPQYGDRAIEIGAVLLENGVIVDR-FQRLMNP-GFRISPFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+E LK +P    + + F DF    N   +AHNA FD  F++ EL+R  +    
Sbjct: 59  ESYTGITNEMLKVEPPCEEVMAGFSDFIAGHNI--VAHNASFDRRFLDFELKRARRAY-- 114

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 +L ++RR +  + N  L +L    GI     S H AL D+ + + +++ M+
Sbjct: 115 EGDCCCSLLLSRRIYQDAPNHKLQTLVNHAGIP-KVGSFHRALADAEMTAHLWLSMI 170


>gi|254482913|ref|ZP_05096149.1| exonuclease, DNA polymerase III, epsilon subunit family [marine
           gamma proteobacterium HTCC2148]
 gi|214036785|gb|EEB77456.1| exonuclease, DNA polymerase III, epsilon subunit family [marine
           gamma proteobacterium HTCC2148]
          Length = 206

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   + DR IEIGAV + +  K    FQ  + P GR+         GIT+ 
Sbjct: 8   VVLDFETTGLSPGEGDRAIEIGAVRI-ESGKVTARFQELMNP-GRRVDSFIESFTGITNL 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D    S +  +F DF  E N   +AHNA FD  F++AEL+RI    L  +       
Sbjct: 66  MLADARPCSDVMRDFADFIGEDN--LVAHNASFDKRFLDAELERI---ALSYTGQFSCSM 120

Query: 129 IARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A R+    +  + L +L +   I +     H AL DS + + +++ M+
Sbjct: 121 LAARRIFQQAPDHKLGTLVEFMNIPVEG-VFHRALYDSEMTAKLWLAML 168


>gi|261493343|ref|ZP_05989869.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261310987|gb|EEY12164.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 221

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 94/192 (48%), Gaps = 20/192 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGR 53
           + KN+ R    +V D+ET GL+++ D ++E+ A+ + +D   Y   ++     + P  G 
Sbjct: 20  LLKNRFRGYLPVVIDVETAGLNAQTDALLELAAITVKMDENGYLVEDQKCHFHIKPFEGA 79

Query: 54  KNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGF 105
             +PE+LK +GI  D  L+   + +    E +            Q A  +AHNA FD GF
Sbjct: 80  NINPESLKFNGIDIDNPLRGAVAENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQGF 139

Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A ++RIN  +DP  P  + DT ++A   +   +  L   C+   I+      H AL D
Sbjct: 140 LQAAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQAAQISFDGHQAHCALYD 197

Query: 164 SHLLSDVYIKMM 175
           +   ++++  M+
Sbjct: 198 TEKTTELFCAMV 209


>gi|167570838|ref|ZP_02363712.1| possible DNA polymerase/helicase [Burkholderia oklahomensis C6786]
          Length = 408

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 22/169 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEFL 70
           D+ETTG  +   RI EIG V +  D+  T  T       N R+  P  ++ L GITD+ +
Sbjct: 19  DLETTGGSAVEHRITEIGVVVVSADHVSTWTTLV-----NPRQAIPPFIQQLTGITDDMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSRIIDT 126
           +  P+F+ + S  ++  + +   ++AHNA FD GF+ AE +R     N D      ++ T
Sbjct: 74  RGAPTFADVASALFERLDGKL--FVAHNASFDRGFLRAEFERAGFAFNPD------VLCT 125

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + ++R   P  SR+ L++L  R+ +T S  ++H AL D+ L+   + K+
Sbjct: 126 VRLSRVLFPRESRHGLDALIARHALTPS--ARHRALADADLIWQFWQKL 172


>gi|261323134|ref|ZP_05962331.1| DNA polymerase III [Brucella neotomae 5K33]
 gi|261299114|gb|EEY02611.1| DNA polymerase III [Brucella neotomae 5K33]
          Length = 233

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 7/172 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 18  IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 76  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172
               T+  ARR        L+    + G+    HR  HGAL D++L + +Y+
Sbjct: 134 PFYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 183


>gi|298369304|ref|ZP_06980622.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sp. oral taxon 014 str. F0314]
 gi|298283307|gb|EFI24794.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sp. oral taxon 014 str. F0314]
          Length = 463

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 88/168 (52%), Gaps = 12/168 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69
           V D+E+TG +   DRI E+  +     +     + V    N ++  P+ +  L GITDE 
Sbjct: 23  VVDLESTGGNFYRDRITEVAVLRFERGAAKRYEWLV----NPQQPIPKFVADLTGITDEA 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P FS I ++     +   A  +AHN++FD  F+  E +R   D   P+  + T+ +
Sbjct: 79  VSGAPVFSDIAADLLPLLH--GAVVVAHNSRFDYTFLRHEFRRAGMDFAAPA--LCTVQL 134

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +RR +P   R++L+S+ +R+GI +   S+H A+ D   LSD   + +V
Sbjct: 135 SRRLYPQFYRHNLDSIIERFGIAVE--SRHRAMADVAALSDFLERSLV 180


>gi|229220849|ref|YP_287921.2| DNA polymerase III PolC [Mycoplasma hyopneumoniae 7448]
 gi|144575503|gb|AAZ53898.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448]
          Length = 1469

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 94/174 (54%), Gaps = 17/174 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +K++ ++FD+ETTGL +  + IIE GAV L +  +  +  Q F+ P G K  P   K+ G
Sbjct: 407 DKLKFVIFDLETTGLSAFYNEIIEFGAVVLQNGIEIEKH-QFFIKPTG-KIPPAITKITG 464

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE------QNAEWIAHNAKFDVGFINAELQRINKDPL 118
           I+ + + D+ + S      W+   E      +++  +AHNA FD  F+    ++  K  L
Sbjct: 465 ISQKMI-DETAIS------WEIALEKITKIIKDSVLVAHNAAFDFSFLEQFFRQKAKKSL 517

Query: 119 DPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             + IIDTL ++R  +P+ ++  L ++ KRY I  +    H A  D+ +L+ ++
Sbjct: 518 K-NPIIDTLEVSRFLNPNEKSHSLKNVAKRYEIEYAEEIAHRADYDAKILTTIW 570


>gi|302880064|ref|YP_003848628.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
 gi|302582853|gb|ADL56864.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
          Length = 204

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+  +  DR  E+  V + D  K +  +Q  +   G    P    L GI++E 
Sbjct: 6   VIDFETTGMSPELGDRATEVAVVIVSD-GKISSRYQSLMN-TGAYIPPFIEDLTGISNEM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P  + +  E  DF     A W+AHNA FD  F++AE  R+            ++ +
Sbjct: 64  IRQAPPAAQVMKELADFVGA--APWVAHNASFDSRFLDAEWSRMGHR--REQAFACSMLL 119

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR +P S N  L +L +  G+  + R  H AL D+ + + ++++M+
Sbjct: 120 ARRLYPDSPNHKLGTLVRFLGLPDTAR-HHRALADAEMTAHLWLRMV 165


>gi|283796625|ref|ZP_06345778.1| DNA polymerase III PolC-type [Clostridium sp. M62/1]
 gi|291076048|gb|EFE13412.1| DNA polymerase III PolC-type [Clostridium sp. M62/1]
          Length = 251

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 99/219 (45%), Gaps = 31/219 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTGLD K D+IIE+GA  L++  K  R     + P+ R+ S     L GIT   +
Sbjct: 20  AIDLETTGLDPKRDKIIEVGAC-LVEQGKVKRELSFLINPH-REISERVELLTGITGRMV 77

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-----INAELQRINKDPLDPSRIID 125
           +  P    +  E   F  E     + H+  FD  F     +NA L      P + +  ID
Sbjct: 78  EHAPGIEEVIGEIAAFVGE--LPLLGHHVIFDYSFLKHAAVNAGL------PFEKNG-ID 128

Query: 126 TLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           TLS+ RR   P  + +L++ C  +   I   + H AL D+     +Y  +       +  
Sbjct: 129 TLSLCRRFMPPEEKKNLSAACGWF--QIPRETAHRALADAKAAHLLYQSLR------DCH 180

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           F+ NE+ F  +     P I  +KR++P   R  KE L E
Sbjct: 181 FQENEEAFAAK-----PLIYKVKREQPASKR-QKEGLRE 213


>gi|212696923|ref|ZP_03305051.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676213|gb|EEB35820.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 1010

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 11/163 (6%)

Query: 14  IETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDEFLKD 72
           +ETTGL   +D+I EIGAV++ +  +    F   + P   K  PE  ++L GIT+E + D
Sbjct: 1   METTGLYKYSDKITEIGAVKV-ENGEITEVFNELVNP--EKMIPEKVVELTGITNEMVMD 57

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
           KP    I  +F +F   ++A ++  N  FD+GFI      ++    +P   +DTL +AR 
Sbjct: 58  KPKIDEILPKFLEF--SKDAYFVGQNTDFDIGFIKEACDNLSYQ-FEPVY-LDTLPMARA 113

Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             PS  R  L+ L K+  + +   + H A  D+   + V+IK+
Sbjct: 114 VFPSMGRFSLDKLAKK--LAVGPFNHHRASDDAMTTAKVFIKL 154


>gi|320450504|ref|YP_004202600.1| putative DNA polymerase III subunit epsilon [Thermus scotoductus
           SA-01]
 gi|320150673|gb|ADW22051.1| putative DNA polymerase III, subunit epsilon [Thermus scotoductus
           SA-01]
          Length = 247

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 10/155 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL    + +IE+G V L       R+FQ  + P+ R  SP   +L GI    
Sbjct: 74  VVLDLETTGLSPGLNEVIEVGLVRL--EQGERRSFQSLVRPS-RPPSPFIERLTGIRAWE 130

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L++ PS   +  + +     + A  +  NA FD+GF+   L+ +     +P  ++DTL +
Sbjct: 131 LEEAPSLEEVLEKAYPLL--RGATLVIQNASFDLGFLRPALEGMGYSLENP--VVDTLRL 186

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163
           A+R  P  R   L++L +   + +  R  H AL D
Sbjct: 187 AKRAMPGLRRYGLDALSQV--LELPPREAHRALGD 219


>gi|331696575|ref|YP_004332814.1| DNA polymerase III subunit epsilon [Pseudonocardia dioxanivorans
           CB1190]
 gi|326951264|gb|AEA24961.1| DNA polymerase III, epsilon subunit [Pseudonocardia dioxanivorans
           CB1190]
          Length = 586

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 28/192 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHG 64
           +V D+ETTG  S N  I EIGAV++       R  +V      L   G    P  + L G
Sbjct: 32  VVLDLETTGGSSANHSITEIGAVKV-------RGGEVLGELATLVDPGTGVPPGVVALTG 84

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRI 123
           IT   +   P  + +     +F     A  +AHNA FD GF+ A  +R ++  P  P   
Sbjct: 85  ITTAMVTGAPRLAQVLPTLLEFMG--GAVLVAHNAPFDAGFLRAACERHDRRWPRPPQLC 142

Query: 124 IDTLS---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGG 178
              L+   ++R + PS R  L +L + +G   + +  H AL D+    +V  +++  VG 
Sbjct: 143 TARLARAVLSRAEAPSVR--LGALARLFG--TATQPTHRALADARATVEVLHRLLERVG- 197

Query: 179 SQINFGFKTNED 190
              N G ++ E+
Sbjct: 198 ---NLGVQSLEE 206


>gi|256059183|ref|ZP_05449390.1| DNA polymerase III, epsilon chain [Brucella neotomae 5K33]
          Length = 224

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 7/172 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172
               T+  ARR        L+    + G+    HR  HGAL D++L + +Y+
Sbjct: 125 PFYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 174


>gi|118471901|ref|YP_888535.1| hypothetical protein MSMEG_4259 [Mycobacterium smegmatis str. MC2
           155]
 gi|118173188|gb|ABK74084.1| DNA polymerase III, epsilon subunit [Mycobacterium smegmatis str.
           MC2 155]
          Length = 672

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 33/179 (18%)

Query: 10  IVFDIETTGLDSKN-------DRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSP 57
           +V D+ETTG  +K        D I EIGAV++       R  +V      L   GR   P
Sbjct: 77  VVVDLETTGGRAKATAPGGLCDAITEIGAVKV-------RGGEVLGELATLVDPGRAIPP 129

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
           + ++L GIT   ++D P   ++   F +F   + A  +AHNA FD+GF+ A  +R     
Sbjct: 130 QIVELTGITTAMVRDAPRIDAVLPMFLEF--ARGAVLVAHNAGFDIGFLRAAAERTQLTW 187

Query: 117 PLDPSRIIDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           P  P  ++ T+ +ARR     + PS R  L+ L + +G + +    H AL D+    DV
Sbjct: 188 PRPP--VLCTVKLARRVLTRDEAPSVR--LSELARLFGASTT--PTHRALDDARATVDV 240


>gi|170739695|ref|YP_001768350.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
 gi|168193969|gb|ACA15916.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 222

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 12/171 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-----GRKNSPEALKL 62
           R +  D+ETTGL ++ DR++  GAV LLD +       V  C +     GR + P A  +
Sbjct: 21  RLLAVDVETTGLGAE-DRVVSFGAV-LLDTATLLGGSPVLACHHLIFDPGRPSHPRAEAV 78

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPS 121
           HG  D  L+ +                 +   +AHNA FD+GF+  E +   + DP  P+
Sbjct: 79  HGYDDWLLRHQDPARGHLDAVAALLAGADLV-VAHNAAFDLGFLAREFRAAGRPDPARPT 137

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               T+   RR+     + L+++C+R  +  +  ++HGAL D+ L   VY+
Sbjct: 138 YC--TMEAYRRRGEPGSSALDAVCRRVKLARAG-ARHGALEDAWLALRVYL 185


>gi|167563688|ref|ZP_02356604.1| possible DNA polymerase/helicase [Burkholderia oklahomensis EO147]
          Length = 405

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 22/169 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEFL 70
           D+ETTG  +   RI EIG V +  D+  T  T       N R+  P  ++ L GITD+ +
Sbjct: 19  DLETTGGSAVEHRITEIGVVVVSADHVSTWTTLV-----NPRQAIPPFIQQLTGITDDMV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSRIIDT 126
           +  P+F+ + S  ++  + +   ++AHNA FD GF+ AE +R     N D      ++ T
Sbjct: 74  RGAPTFADVASALFERLDGKL--FVAHNASFDRGFLRAEFERAGFAFNPD------VLCT 125

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + ++R   P  SR+ L++L  R+ +T S  ++H AL D+ L+   + K+
Sbjct: 126 VRLSRVLFPRESRHGLDALIARHALTPS--ARHRALADADLIWQFWQKL 172


>gi|83312383|ref|YP_422647.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
 gi|82947224|dbj|BAE52088.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
          Length = 215

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 26/193 (13%)

Query: 8   RKIVFDIETTGLDSKNDR--------------IIEIGAVELL---DYSKTNRTFQVFLCP 50
           R +  D ETTG                     +IEIG +EL+   +  KT  ++Q  L P
Sbjct: 12  RIVAIDAETTGFKVPTPAEIKKMPKGLRLPGVVIEIGCLELVRGDEGWKTGESWQRRLQP 71

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
            G   S  ++ +HGI+   LK  PSF  +  +F  F   Q+A  +AH+A+ ++ F+N E 
Sbjct: 72  GG-PISKASIDVHGISPAELKTAPSFRDVLDDFEAFIG-QDA-LLAHSAENEMEFLNFEY 128

Query: 111 QRINKDPLDP-----SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR-SKHGALLDS 164
            R  +   D         + T  ++R+  P     L+ LC R  +  S R   HGALLD+
Sbjct: 129 ARAGRCGFDEMIFGDGDFVCTQELSRQFFPGVPGSLDVLCDRLWVDRSDRFEHHGALLDA 188

Query: 165 HLLSDVYIKMMVG 177
            L ++ ++KM  G
Sbjct: 189 ILTAEAFMKMAGG 201


>gi|227505453|ref|ZP_03935502.1| possible exonuclease, RNase T and DNA polymerase III
           [Corynebacterium striatum ATCC 6940]
 gi|227197946|gb|EEI77994.1| possible exonuclease, RNase T and DNA polymerase III
           [Corynebacterium striatum ATCC 6940]
          Length = 1118

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 11/176 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG  S  DR+IEIG V LLD+++    T++  + P  +++ P +  +H IT
Sbjct: 6   RYAVVDFETTGFGS-TDRVIEIGVV-LLDHNREVESTWETLVQP--QRDIPNSF-VHHIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIID 125
              + D P F  +  EF+D  N +    +AHNA F+V F+  E   +    P   + ++D
Sbjct: 61  PTDVVDAPLFGEVAGEFFDLLNGRTV--VAHNAPFEVRFLQREFSNLGVAWPNYGAWVVD 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           T  + ++ +P     L    K  GIT  +   H AL D+   ++++  ++  G+ +
Sbjct: 119 TKRLFQQTYPGEGTTLEHALKVVGIT--NARPHSALADTLATAELFAWLVSQGNDV 172


>gi|170764220|ref|ZP_02638287.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens CPE str. F4969]
 gi|170715785|gb|EDT27967.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens CPE str. F4969]
          Length = 876

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 14/159 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+E+TG+D   D II+I A++L    +    F+ FL    +K+  ++  +HG +DE 
Sbjct: 511 IVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFL--KNKKSVKDSYYVHGFSDEM 568

Query: 70  LK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           L+    DK     +  EF ++   +++  + HN ++D+  + +EL+R N          D
Sbjct: 569 LQRIGEDK---EKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFKTFYD 623

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163
           TL I RR +P + N  L +L K Y     H+  H A+ D
Sbjct: 624 TLDIYRRFYPGNINYKLENLSKVYD--TKHKPSHDAMDD 660


>gi|261416331|ref|YP_003250014.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372787|gb|ACX75532.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325547|gb|ADL24748.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 215

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 19/181 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-------FQVFLCPNGRKNSPEALKL 62
           + FD+ETTGL ++ D IIEIGAV+     K  R        F   + PN    + EA  +
Sbjct: 9   VAFDLETTGLVNRKDEIIEIGAVKFTVEVKNGRVVPKLISEFDTLVKPNMLIPA-EATNV 67

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPS 121
           + ITD+ +++ P       +F  F    +   +AHNA FD  F+  A  Q     P +P 
Sbjct: 68  NHITDKMVENAPPVGEALKQFTAFCGPGSI-LLAHNANFDASFLRTAYEQNPQFTPGNP- 125

Query: 122 RIIDTLSIARRKHPSSRND-----LNSLCKR--YGITISHRSKHGALLDSHLLSDVYIKM 174
            ++D+L+I++   P   N       N   KR    +TI     H ++ D  +L +V++ +
Sbjct: 126 -VVDSLAISKTIMPELANHKLGFMANMFMKRGEISMTIDEEKMHRSVYDCEMLMEVFVAL 184

Query: 175 M 175
           +
Sbjct: 185 L 185


>gi|78044638|ref|YP_360855.1| putative DNA polymerase III, epsilon subunit [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996753|gb|ABB15652.1| putative DNA polymerase III, epsilon subunit [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 222

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 10/168 (5%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D+ETTGL   + D II IGAV++++ + T   F  ++ P  ++  PE + +L GI+ +
Sbjct: 40  VIDLETTGLKPFQGDEIIAIGAVKIINGNITRPAFHAYVNP--QREIPEVVQRLTGISPK 97

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P  ++  +   DF   +N+  + H+  FD+ F+N  L  +    L P R++DT+ 
Sbjct: 98  TVQNAPPLTNTLTTLLDF--ARNSVIVGHSVNFDLAFLNKHLSSLTGKKLTP-RLLDTVD 154

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +     P   N  L +  +++ I++  R  H AL D+ + + V++  +
Sbjct: 155 LGIYLFPREPNYSLENFAQKFAISLQGR--HTALGDAVICAKVFLNFL 200


>gi|170764037|ref|ZP_02630402.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens E str. JGS1987]
 gi|170664085|gb|EDT16768.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens E str. JGS1987]
          Length = 876

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 14/159 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+E+TG+D   D II+I A++L    +    F+ FL    +K+  ++  +HG +DE 
Sbjct: 511 IVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFL--KNKKSVKDSYYVHGFSDEM 568

Query: 70  LK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           L+    DK     +  EF ++   +++  + HN ++D+  + +EL+R N          D
Sbjct: 569 LQRIGEDK---EKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFKTFYD 623

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163
           TL I RR +P + N  L +L K Y     H+  H A+ D
Sbjct: 624 TLDIYRRFYPGNINYKLENLSKVYD--TKHKPSHDAMDD 660


>gi|295092491|emb|CBK78598.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium cf. saccharolyticum K10]
 gi|295115331|emb|CBL36178.1| exonuclease, DNA polymerase III, epsilon subunit family
           [butyrate-producing bacterium SM4/1]
          Length = 251

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 100/221 (45%), Gaps = 35/221 (15%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTGLD K D+IIE+GA  L++  K  R     + P+ R+ S     L GIT   +
Sbjct: 20  AIDLETTGLDPKRDKIIEVGAC-LVEQGKVKRELSFLINPH-REISERVELLTGITGRMV 77

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-----INAELQRINKDPLDPSRIID 125
           +  P    +  E   F  E     + H+  FD  F     +NA L      P + +  ID
Sbjct: 78  EHAPGIEEVIGEIAAFVGE--LPLLGHHVIFDYSFLKHAAVNAGL------PFEKNG-ID 128

Query: 126 TLSIARR-KHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           TLS+ RR   P  + +L++ C  + I    +HR+          LSD     ++  S  +
Sbjct: 129 TLSLCRRFMPPEEKKNLSAACGWFQIPRETAHRA----------LSDAKAAHLLYQSLRD 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
             F+ NE+ F  +     P I  +KR++P   R  KE L E
Sbjct: 179 CHFQENEEAFAAK-----PLIYKVKREQPASKR-QKEGLRE 213


>gi|291563198|emb|CBL42014.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
           bacterium SS3/4]
          Length = 1376

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 93/172 (54%), Gaps = 19/172 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66
           +VFDIETTG     ++IIEIGAV++ +    +R  + F+ P      P   +  +L GI 
Sbjct: 416 VVFDIETTGFSPIKNKIIEIGAVKVRNGEIIDRMDE-FVNP----EVPIPFDIERLTGIN 470

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124
           D  +    +   +   F +F    +A  +AHNA FDV FI  NA L  ++ DP     ++
Sbjct: 471 DAMVMGADTVDKVLPRFLEFVG--DAALVAHNASFDVSFISHNAGLLGLSFDP----TVL 524

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+++AR   P+ +R  L+++ K  G+++ +   H A+ D+   + +++K +
Sbjct: 525 DTVTLARALLPNLNRFKLDTVAKALGVSLENH--HRAVDDAEATAGIFLKFV 574


>gi|163802995|ref|ZP_02196881.1| DNA polymerase III, alpha subunit [Vibrio sp. AND4]
 gi|159173169|gb|EDP57998.1| DNA polymerase III, alpha subunit [Vibrio sp. AND4]
          Length = 209

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 88/170 (51%), Gaps = 13/170 (7%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV+++D    + +FQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPNMGDRAIEIGAVKIVDGEVVD-SFQQLMNP-GFRVSSFIEGYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RIN           +L 
Sbjct: 66  MLRTAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINLGY--SGEFACSLL 121

Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +ARR     PS +  L  L  RY    +    H AL D+ + + +++ M+
Sbjct: 122 VARRLIQDAPSHK--LGELV-RYKNIENDGVFHRALADAQVTARLWLLMV 168


>gi|163844775|ref|YP_001622430.1| DNA polymerase III epsilon subunit family exonuclease [Brucella
           suis ATCC 23445]
 gi|163675498|gb|ABY39608.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
           suis ATCC 23445]
          Length = 224

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 7/172 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +     +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  VHGFDNWMTCYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172
            +  T+  ARR        L+    + G+    HR  HGAL D++L + +Y+
Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 174


>gi|315187162|gb|EFU20919.1| DNA polymerase III, epsilon subunit [Spirochaeta thermophila DSM
           6578]
          Length = 198

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGLD     ++EI  V+        R F   L         E  K+HGI D+ 
Sbjct: 22  VAFDLETTGLDPVRHSVVEIACVKF--QGGEPRAFFSLLVKPPHPIPAEVTKIHGIGDQD 79

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ P   S+      F        +AHNA FD+ F+  E  R  + P    R IDT  +
Sbjct: 80  VEEAPPLPSVLPMLESFVGTHL--LVAHNAPFDLSFLRIEYARCGR-PYPGFRAIDTRLL 136

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           AR   P   R  L SL +   I +  +  H AL D+    D++  +
Sbjct: 137 ARSVLPHLGRYSLASLTRALDIPL--QQHHRALSDAWACGDLFYAL 180


>gi|311033291|ref|ZP_07711381.1| Exonuclease [Bacillus sp. m3-13]
          Length = 216

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 7/174 (4%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
           +K+   VFD ETTG + +++DR+IE+GAV++ +     N  +Q ++ PN R+   E ++L
Sbjct: 25  DKLEFTVFDTETTGFNVARDDRLIELGAVKIKNLQVIDNSAYQTYINPN-RQIPREIIEL 83

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             IT E   + P      ++  +  N+ +  ++ H   FD+  I AEL+R N    +P +
Sbjct: 84  TSITQEQTDEAPQALEAITKLTNMANQTSVCYVGHYLAFDMQAIQAELKRNNLKWKNP-K 142

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +DTL +     PS    DL    + +G  I  R  H AL D+   + ++ +++
Sbjct: 143 SLDTLDLIGYIAPSYDMRDLEKYARDFGTRIYQR--HSALGDALTTAYLFTELL 194


>gi|254443946|ref|ZP_05057422.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Verrucomicrobiae bacterium DG1235]
 gi|198258254|gb|EDY82562.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Verrucomicrobiae bacterium DG1235]
          Length = 205

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  S  DR IEIGAV +     T R FQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPSLGDRAIEIGAVRIEGGEVTGR-FQELMNP-GCRISGFIEDYTGITNG 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D      +   F +F    N   +AHNA FD  F++AEL RI++  +     + ++ 
Sbjct: 66  MLRDAEPCEVVMERFAEFIGGHN--LVAHNASFDQRFLDAELARISQRRV--GDFVCSML 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ARR    + N       RY         H AL DS + + ++I+M+
Sbjct: 122 AARRLFQDAPNHQLGTLVRYANFSVDGVFHRALYDSEMTTKLWIRML 168


>gi|84385238|ref|ZP_00988270.1| DNA polymerase III, alpha subunit [Vibrio splendidus 12B01]
 gi|84379835|gb|EAP96686.1| DNA polymerase III, alpha subunit [Vibrio splendidus 12B01]
          Length = 207

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL  +  DR IEIGAV+L++    + TFQ  + P G + S       GI++ 
Sbjct: 10  IVLDFETTGLSPNMGDRAIEIGAVKLVNGEVVD-TFQQLMNP-GFRVSGFIESYTGISNR 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L    S S +  EF DF   Q ++ +AHNA FD  F++AEL  I +D     +   ++ 
Sbjct: 68  MLSTAASCSEVMDEFADFI--QGSQLVAHNASFDKRFLDAELDFIGRDY--TGKFACSML 123

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IARR    +  + L  L +   I  +  + H AL DS + + +++ M+
Sbjct: 124 IARRLIQDAPTHKLGDLVRFKNID-NDGTFHRALADSEMTARLWLLMI 170


>gi|304408937|ref|ZP_07390558.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|307302940|ref|ZP_07582695.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
 gi|304352758|gb|EFM17155.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|306913300|gb|EFN43722.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
          Length = 208

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 16/208 (7%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  ++ DR IEIGAV + D   T R F   + P G + S       GI+++
Sbjct: 10  VVLDFETTGLSPNQGDRAIEIGAVLIEDGVITQR-FSELMNP-GFRISRFIEDYTGISNQ 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D    + + + F DF  + N   +AHNA FD  F++AE  +I    L   +   +L 
Sbjct: 68  MLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYL--GQFGCSLL 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +ARR + ++ N       RY    +  + H AL D+ +   +++ M+    Q  FG    
Sbjct: 124 VARRLYQAAPNHQLGTLVRYKKLPTDGTFHRALADAEMTGYLWLAMLADLQQ-EFGVNAP 182

Query: 189 EDRFFKE-EKKTVPNISLLKRDKPLFTR 215
                ++  KKT       K D P F R
Sbjct: 183 TFELLQKIAKKT-------KADVPKFLR 203


>gi|307730690|ref|YP_003907914.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003]
 gi|307585225|gb|ADN58623.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003]
          Length = 383

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 91/168 (54%), Gaps = 13/168 (7%)

Query: 10  IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67
           IVF D+ETTG  +   RI E+G VE+     T  +  V    + ++  P  ++ L GIT+
Sbjct: 15  IVFVDLETTGGSTNEHRITEVGVVEVGPTGVTRWSSLV----DPQQPIPSFIQQLTGITN 70

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  P+F +I  E +   N +   ++AHNA FD GF+  E +R+     DP  ++ T+
Sbjct: 71  AMVRGAPTFDAIAPELFARLNGKL--FVAHNASFDRGFLRGEFRRVGIS-FDPD-VLCTV 126

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++R   PS  R+ L++L +R+ +  S R  H AL D+ L+   + ++
Sbjct: 127 RLSRALFPSEKRHGLDALVERHSLVPSDR--HRALADADLIWQFWQRL 172


>gi|217973179|ref|YP_002357930.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223]
 gi|217498314|gb|ACK46507.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223]
          Length = 208

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 16/208 (7%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  ++ DR IEIGAV L++     + F   + P G + S       GI+++
Sbjct: 10  VVLDFETTGLSPNQGDRAIEIGAV-LIENGVITQRFSELMNP-GFRISRFIEDYTGISNQ 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D    + + + F DF  + N   +AHNA FD  F++AE  +I    L   +   +L 
Sbjct: 68  MLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYL--GQFGCSLL 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +ARR + ++ N       RY    +  + H AL D+ +   +++ M+    Q  FG  + 
Sbjct: 124 VARRLYQAAPNHQLGTLVRYKQLPTDGTFHRALADAEMTGHLWLAMLADLQQ-EFGLCSP 182

Query: 189 EDRFFKE-EKKTVPNISLLKRDKPLFTR 215
                ++  KKT       K D P F R
Sbjct: 183 TFELLQKLAKKT-------KADVPKFLR 203


>gi|225450649|ref|XP_002282861.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
 gi|225450651|ref|XP_002282855.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 337

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 81/175 (46%), Gaps = 20/175 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD ETTGL   NDRIIEIG  +L      N TFQ  + P     +P    +HGIT   
Sbjct: 134 IVFDTETTGLSRANDRIIEIGLQDL--GGGENSTFQTLVNPERIVPNPH---VHGITTYM 188

Query: 70  L--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121
           +   D P +  +      +   +        W+AHN + FDV F+  E  R N +     
Sbjct: 189 VNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPNW 248

Query: 122 RIIDTLSIARRKHPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           R +DTL +AR    S+ +D      L +L + Y I +   + H  L D + LS V
Sbjct: 249 RFLDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVGPA-HRVLSDVYTLSQV 302


>gi|183983226|ref|YP_001851517.1| hypothetical protein MMAR_3235 [Mycobacterium marinum M]
 gi|183176552|gb|ACC41662.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 674

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 103/214 (48%), Gaps = 31/214 (14%)

Query: 10  IVFDIETTGL------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ETTG        S  D I EIGAV++         F   + P  R   P+ ++L 
Sbjct: 58  VVVDLETTGGRATGTEASPPDAITEIGAVKVRGGVILGE-FATLVDPQ-RSIPPQIVRLT 115

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   L D P+  S+   F++F    N+  +AHNA FD+GF+ A   R +      S++
Sbjct: 116 GITTAMLCDAPTIDSVLPMFFEFVG--NSVLVAHNAGFDIGFLRAAAGRCDIA-WPGSKV 172

Query: 124 IDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176
           + T+ +ARR     + PS R  L +L + +  +++ +  H AL D+    +V   ++  V
Sbjct: 173 LCTVRLARRVLSREEAPSVR--LAALARLF--SVATQPTHRALDDARATVEVLHALIERV 228

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
           G    N G  +     + E +  +P ++  +R K
Sbjct: 229 G----NQGVHS-----YAELRAYLPGVTPAQRRK 253


>gi|90023051|ref|YP_528878.1| DNA-directed DNA polymerase [Saccharophagus degradans 2-40]
 gi|89952651|gb|ABD82666.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40]
          Length = 215

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 82/169 (48%), Gaps = 9/169 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV L +    +R FQ  + P G + S       GI + 
Sbjct: 16  VVLDFETTGLSPDMGDRAIEIGAVRLHNGEIVDR-FQALMNP-GFQISGFIASYTGIDNS 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P    +   F ++    N   +AHNA FD  F++AEL RI +          +L 
Sbjct: 74  MLAKAPPCDEVMDAFANYIGNDN--LVAHNASFDKRFLDAELYRIGRS--YSGDFTCSLL 129

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            ARR  P++ N  L +L K   +  S  + H AL DS + + V++ M++
Sbjct: 130 AARRLFPNAENHKLGTLVKHTKLQ-SDGAFHRALYDSEMTAKVWMVMLM 177


>gi|296089746|emb|CBI39565.3| unnamed protein product [Vitis vinifera]
          Length = 332

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 81/175 (46%), Gaps = 20/175 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD ETTGL   NDRIIEIG  +L      N TFQ  + P     +P    +HGIT   
Sbjct: 129 IVFDTETTGLSRANDRIIEIGLQDL--GGGENSTFQTLVNPERIVPNPH---VHGITTYM 183

Query: 70  L--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121
           +   D P +  +      +   +        W+AHN + FDV F+  E  R N +     
Sbjct: 184 VNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPNW 243

Query: 122 RIIDTLSIARRKHPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           R +DTL +AR    S+ +D      L +L + Y I +   + H  L D + LS V
Sbjct: 244 RFLDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVGPA-HRVLSDVYTLSQV 297


>gi|167837493|ref|ZP_02464376.1| possible DNA polymerase/helicase [Burkholderia thailandensis
           MSMB43]
          Length = 379

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 91/163 (55%), Gaps = 10/163 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTG  +   RI EIG V +++ S  + T+   + P  +   P   +L GITD  ++ 
Sbjct: 19  DLETTGGSAAEHRITEIGVV-VVNASHVS-TWTTLVDPR-QPIPPFIQQLTGITDAMVRG 75

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P+F+ I S  ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ ++R 
Sbjct: 76  APTFADIASALFERLDGKL--FVAHNASFDRGFLRAEFERAGVA-FNPD-VLCTVRLSRA 131

Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|225849433|ref|YP_002729598.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644689|gb|ACN99739.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 205

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 90/168 (53%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+ETTGL+  N  IIEI A+ +      ++ F   + P+         KL GIT+  
Sbjct: 12  LIVDLETTGLNPVNSEIIEIAALRVEGGIVVDK-FHTLVKPSIGFIPTYITKLTGITNAL 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + DKP+   +F +F  F   +N+  +AHNA+FD+ F+N+   +I    +  + ++ T ++
Sbjct: 71  VVDKPTIEEVFPQFLKF--SENSIIVAHNAQFDMSFLNSVSYQITGRSIQ-NPVLCTQNL 127

Query: 130 ARRKHP--SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+R  P   S++ +N     Y   I +  KH AL D+ +  +++ K++
Sbjct: 128 AKRLFPDLPSKSLVN---LAYHFNIPYNKKHRALEDALVTYELFKKII 172


>gi|312135559|ref|YP_004002897.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis
           OL]
 gi|311775610|gb|ADQ05097.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis
           OL]
          Length = 1402

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG DS+ ++IIEIGAV++ +   T R F  F+ P G K      +L GI  + 
Sbjct: 391 VVVDVETTGFDSQKNKIIEIGAVKIENGQITER-FSTFVDPEG-KIPVRISELTGIYQDM 448

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P       EF  F     +  +AHNA+FD+GF+    Q      +     IDTL +
Sbjct: 449 VDKAPKLRDAILEFEKF--ASGSVLVAHNAQFDIGFLKKAYQECG--IIFDYTYIDTLEL 504

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +RR     S + LN + +   + + H   H A  D+   + ++  +M
Sbjct: 505 SRRLLTGLSSHKLNKVAEFLNVELRHH--HRADSDAETTAGIFTSLM 549


>gi|333027027|ref|ZP_08455091.1| putative DNA polymerase III [Streptomyces sp. Tu6071]
 gi|332746879|gb|EGJ77320.1| putative DNA polymerase III [Streptomyces sp. Tu6071]
          Length = 611

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 9/162 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ET+GL ++ DR++ +  V +    +    F   + P      P  + +HG+T E L
Sbjct: 22  LVDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTLVDPG---CDPGPVDVHGLTRERL 78

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P+F  I          Q+   +AHNA+FD  F+  E  R     L  +R + TL++ 
Sbjct: 79  SGAPAFDQIAGRLGAML--QDRVLVAHNAQFDYDFLAHEFARARLY-LPVTRRLCTLALN 135

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           R+  P +R+  L+SL   YG+  +    H AL D+ +L+ ++
Sbjct: 136 RQVDPPTRDMKLDSLAAHYGVPRTR--AHDALDDTRVLAGIF 175


>gi|319650832|ref|ZP_08004969.1| hypothetical protein HMPREF1013_01575 [Bacillus sp. 2_A_57_CT2]
 gi|317397430|gb|EFV78131.1| hypothetical protein HMPREF1013_01575 [Bacillus sp. 2_A_57_CT2]
          Length = 220

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITD 67
           IVFD ETTG   S  DRIIEIGAV +  +    +  FQ ++ P  R+ S E  +L  I+D
Sbjct: 29  IVFDTETTGFQVSATDRIIEIGAVPVKGFQVQEKDLFQTYVNPK-RQISREIRELTSISD 87

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           E +KD P        F+D+   + A   + H   FD   I +E +R  K  L     IDT
Sbjct: 88  ELVKDAPQALEAILSFFDYVESREAVCLVGHYVGFDALAIKSEFKR-EKLALKNFLTIDT 146

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHR--SKHGALLDSHLLSDVYIKMM 175
           L +     PS   D+  L +RY +    R   +H A+ D+   + +Y++++
Sbjct: 147 LDLIGFIAPS--YDMRDL-ERYAMAFGTRIYDRHSAVGDALTTAYLYVELL 194


>gi|251772732|gb|EES53294.1| DNA polymerase III, epsilon subunit [Leptospirillum
           ferrodiazotrophum]
          Length = 288

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 104/220 (47%), Gaps = 28/220 (12%)

Query: 10  IVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+ETTGL  +ND RI+EIG + + D           + P G    P   ++HGI D 
Sbjct: 32  LFVDVETTGLLFENDARIVEIG-ISVWDSFGLKERMTSLINP-GSPIPPMYTRIHGIDDV 89

Query: 69  FLKDKPSFSSIFSEFW--DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
            ++  P+F     EFW  +    Q    IAHN  FD+G IN EL R +  PL +P   ID
Sbjct: 90  MVEHSPTFL----EFWMENGIRFQGKVVIAHNLSFDMGMINRELMRRDMAPLGNPG--ID 143

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY-------IKMMVG 177
           T+ I +   P  +N  L+ L K  G  + H S+H A  D   L  V        ++ + G
Sbjct: 144 TVPILKSLLPREKNHKLSHLAKSLG--VRHDSRHRAEDDVAALEQVLTIALDRPLEDLRG 201

Query: 178 GSQINFGF--KTNEDRFFKEE----KKTVPNISLLKRDKP 211
              ++F F       R+F++     +KT   ++++  +KP
Sbjct: 202 PLGMDFSFWGGAPSHRYFRDSVAWCQKTCEPLTIMLAEKP 241


>gi|146328835|ref|YP_001209227.1| ribonuclease T [Dichelobacter nodosus VCS1703A]
 gi|146232305|gb|ABQ13283.1| ribonuclease T [Dichelobacter nodosus VCS1703A]
          Length = 206

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-----RTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G D + D ++E+ AV L+++++        TF   + P  G   +P++LK++
Sbjct: 15  VVVDVETGGFDHEKDALLEVAAV-LVNFNEAGNLAPVETFHYHVKPFEGAHLNPDSLKIN 73

Query: 64  GITDEFLKDKPSFSSI------FSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN 114
           GI D F   +P+   +      F    ++   Q+      + HNA FD+GFINA   R N
Sbjct: 74  GI-DPFHPLRPALDEVTVAKQLFGAIREYQKAQSCTRSILVGHNAHFDLGFINALAARCN 132

Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              +P  P   +DT+S+    +   +  L  + K  G        HGA  D+ L + ++ 
Sbjct: 133 YQHNPFHPFSSLDTVSLGALAY--GQTVLARIAKAAGFEYDSERAHGAKYDTELTAQIFC 190

Query: 173 KMM 175
            ++
Sbjct: 191 HII 193


>gi|323527026|ref|YP_004229179.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001]
 gi|323384028|gb|ADX56119.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001]
          Length = 386

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 13/168 (7%)

Query: 10  IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67
           IVF D+ETTG  +   RI E+G VE+     T  +  V    + ++  P  ++ L GIT+
Sbjct: 15  IVFVDLETTGGSTNEHRITEVGVVEVGPTGVTRWSSLV----DPQQPIPSFIQQLTGITN 70

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  P+F +I  E   F       ++AHNA FD GF+  E +R+     DP  ++ T+
Sbjct: 71  AMVRGAPTFEAIAPEL--FARLDGKLFVAHNASFDRGFLRGEFRRVGIS-FDPD-VLCTV 126

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++R   PS  R+ L++L +R+ +  S R  H AL D+ L+   + ++
Sbjct: 127 RLSRALFPSEKRHGLDALVERHALVPSDR--HRALADADLIWQFWQRL 172


>gi|152967191|ref|YP_001362975.1| hypothetical protein Krad_3247 [Kineococcus radiotolerans SRS30216]
 gi|151361708|gb|ABS04711.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans
           SRS30216]
          Length = 601

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 17/188 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---KLHGIT 66
           +V D+ETTG    +  I EIGAV++    +    FQ  +    R +SP       L GIT
Sbjct: 29  VVVDLETTGGAPADAGITEIGAVKVRG-GQVLGEFQTLV----RPSSPIPAFVQVLTGIT 83

Query: 67  DEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  +   PS + +   F +F   E+    +AHNA +D  F+ A  Q +   P    R++D
Sbjct: 84  NGMVATAPSLAQVLPAFLEFAGFERGTVLVAHNAPYDTSFLKAACQ-VTGRPWPKPRVVD 142

Query: 126 TLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           T+ +AR+   +  +    L +L + +G   +    H AL D+    DV   ++  G   N
Sbjct: 143 TVVLARQLVDRDEAPDRKLGTLARLFGTATT--PDHRALHDARATVDVLHALL--GRVGN 198

Query: 183 FGFKTNED 190
            G  + ED
Sbjct: 199 RGVHSLED 206


>gi|325847082|ref|ZP_08169908.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481054|gb|EGC84099.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 1010

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 15/165 (9%)

Query: 14  IETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDEFLKD 72
           +ETTGL   +D+I EIGAV++ +  +    F   + P   K  PE  ++L GIT+E + D
Sbjct: 1   METTGLYKYSDKITEIGAVKV-ENGEITEVFNELVNP--EKMIPEKVVELTGITNEMVMD 57

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--DPLDPSRIIDTLSIA 130
           KP    I  +F +F   ++A ++  N  FD+GF+      ++   +P+     +DTL +A
Sbjct: 58  KPKIDEILPKFLEF--SKDAYFVGQNTDFDIGFVKEACDNLSYQFEPI----YLDTLPMA 111

Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           R   PS  R  L+ L K+  + +   + H A  D+   + V+IK+
Sbjct: 112 RAVFPSMGRFSLDKLAKK--LAVGPFNHHRASDDAMTTAKVFIKL 154


>gi|119357378|ref|YP_912022.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354727|gb|ABL65598.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides
           DSM 266]
          Length = 219

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV L+++ +    +Q  + P G + S       GIT+E
Sbjct: 10  VVLDFETTGLSPQYGDRAIEIGAV-LVEHGEIVDRYQKLMNP-GFRISRFIESYTGITNE 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  +P    + +EF +F    N   +AHNA FD  F++ EL+R  +  +       +L 
Sbjct: 68  MLSGQPCCEEVMTEFSEFIAGHNI--VAHNASFDRRFLDFELKRAKR--VYEGACCCSLL 123

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++RR +  S N  L +L    GI     S H AL D+ + + +++ M+
Sbjct: 124 VSRRIYQDSPNHKLQTLVSHAGIP-EIGSFHRALADAEMTAHLWMSMI 170


>gi|162447117|ref|YP_001620249.1| DNA polymerase III subunit alpha [Acholeplasma laidlawii PG-8A]
 gi|161985224|gb|ABX80873.1| DNA polymerase III alpha subunit [Acholeplasma laidlawii PG-8A]
          Length = 1504

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 92/186 (49%), Gaps = 28/186 (15%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTG     D+IIEI A ++       R F+V + P   + S    ++  ITDE +
Sbjct: 414 VFDIETTGFSFTRDKIIEIAAYKVRGGFIAER-FEVLINPE-EQLSETTKRITNITDEMV 471

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +++ +   +   F +F   +    +AHNA FD+GFI  E  R+     +P  +IDTL+IA
Sbjct: 472 ENEKTIEEVLPTFLEFI--KGTVLVAHNASFDIGFI-YEKSRLLGLQHEPFAVIDTLNIA 528

Query: 131 RRKHPSS---------------------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           R  + ++                     R +L +L K + + +   + H A+ D++  ++
Sbjct: 529 RYFYNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNL--EAHHRAIYDAYATAE 586

Query: 170 VYIKMM 175
           V++ M+
Sbjct: 587 VFLNML 592


>gi|157363106|ref|YP_001469873.1| DNA polymerase III PolC [Thermotoga lettingae TMO]
 gi|157313710|gb|ABV32809.1| DNA polymerase III, alpha subunit [Thermotoga lettingae TMO]
          Length = 1379

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 7/161 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  ++ R ++ DIETTGL      IIEIGAV + +   T+  F  F+ P+ + N+   ++
Sbjct: 363 IEIDQERYVIVDIETTGLHPMFSEIIEIGAVAIENGQITDE-FHSFVKPSEKLNA-FTVQ 420

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
              ITD+ L ++PS   +  +F +F   ++   +AHNA FD  F+   +++  K   +P+
Sbjct: 421 FTKITDQMLANQPSIEEVLPKFMEFC--KDTTLVAHNANFDYRFLRYWIEKSLKLNWEPA 478

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY--GITISHRSKHGA 160
            +IDTL++A++    S  +L  L   +  G    HR+   A
Sbjct: 479 -VIDTLALAKKLVRLSSYNLEKLASHFKLGPFSHHRASEDA 518


>gi|254489685|ref|ZP_05102881.1| exonuclease family [Methylophaga thiooxidans DMS010]
 gi|224465094|gb|EEF81347.1| exonuclease family [Methylophaga thiooxydans DMS010]
          Length = 488

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 9/159 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTG  +  DR+ EI  +E+ D     R +Q  L P  R   P   +L GITD  
Sbjct: 12  VILDCETTGGRASRDRLTEIALIEVEDGHVVKR-WQTLLNPL-RPIPPWITRLTGITDAT 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+F  I  E +   + +    +AHNA+FD  F+    QR        ++ + ++ +
Sbjct: 70  VADAPTFDEIADELFACLDGKVI--VAHNARFDYSFLRQSFQRCGYTL--GNKTLCSVKL 125

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLL 167
           +R+  P  R + L+ + +R G+TI +R  H A+ D+ +L
Sbjct: 126 SRQLFPEHRSHGLDRIIERLGLTIDNR--HRAMADTEVL 162


>gi|239906614|ref|YP_002953355.1| DNA polymerase III epsilon subunit [Desulfovibrio magneticus RS-1]
 gi|239796480|dbj|BAH75469.1| DNA polymerase III epsilon subunit [Desulfovibrio magneticus RS-1]
          Length = 242

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 80/183 (43%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D E TG D K D I+ + AV L   S     TF     P  R    ++  +HG+T  
Sbjct: 47  VVLDTELTGFDPKRDAIVSVAAVRLRGLSIMAGETFAALTRPQ-RDVPRQSSLVHGLTAS 105

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L       ++     DF     A  + H+   D+GF+NA  +R   D L  +  IDTL 
Sbjct: 106 TLSQAADLEAVLLRLLDFIGP--AVIVGHHVDLDMGFLNAASRRYFGDEL-AAPCIDTLR 162

Query: 129 IARRKHPS------------SRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKM 174
           +A                  +  DL SLC+RYG+    +H ++H AL  ++L   VY+  
Sbjct: 163 LAMAYEEKRLSLEGGAGLEHAAFDLPSLCRRYGLPEFAAHDARHDALAAAYLF--VYLAK 220

Query: 175 MVG 177
            +G
Sbjct: 221 KLG 223


>gi|116333503|ref|YP_795030.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367]
 gi|116098850|gb|ABJ63999.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367]
          Length = 948

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 17/168 (10%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V DIETTG   +  DRII+IG V  + +++    F+  + P   K  P A+ +L GIT++
Sbjct: 9   VVDIETTGTSVTDGDRIIQIGCV-FVQHNQVINHFETDVNP--LKEIPAAISRLTGITNK 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    +      N  ++AHN  FD+ FINAEL+R+   P  P   +DT+S
Sbjct: 66  RVRHAPLFDDVAGTLYSLLT--NTVFVAHNVNFDLPFINAELERVGY-PALPIAAVDTVS 122

Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +++   P++ +    DL+ L       I H + H A  D+   ++++I
Sbjct: 123 LSQILLPTATSFRLRDLSRL-----FNIEHDNPHSADSDASATAELFI 165


>gi|331269632|ref|YP_004396124.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925]
 gi|329126182|gb|AEB76127.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum BKT015925]
          Length = 1443

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 9/164 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG  S  D+IIEIGAV++ + +  + +F  F+ P   K      +L  IT++ 
Sbjct: 431 VVFDLETTGFSSAYDKIIEIGAVKIKNGNIID-SFSTFVNPE-IKVPYNITELTSITNDD 488

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+  +  SI  +F +F  +  +  +AHNA FD+ FI      +N D      ++DT+ +
Sbjct: 489 VKNADTIDSILPKFIEFCGD--SVLVAHNANFDMSFIRKNCNDLNIDI--NYTVMDTVPL 544

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           A+   P   R  LN++ K  G+++ +   H A+ D+    D+ +
Sbjct: 545 AKFLFPELKRYKLNTIAKHLGVSLENH--HRAVDDAKATGDILL 586


>gi|319955911|ref|YP_004167174.1| DNA polymerase iii, epsilon subunit [Nitratifractor salsuginis DSM
           16511]
 gi|319418315|gb|ADV45425.1| DNA polymerase III, epsilon subunit [Nitratifractor salsuginis DSM
           16511]
          Length = 272

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 10/160 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDEF 69
           + DIET G      ++IEIGAV L +    +R      C       PE  +KL GI    
Sbjct: 75  IIDIETNGSKPGRSQVIEIGAVMLKEGKIIDRLETFVAC----AYLPEHIIKLTGIEPTD 130

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L + PS     ++  +F    +A + AHNA FD GF+NA  QR    P+  + ++ T+ +
Sbjct: 131 LAEAPSRKEALTQLRNFMG--DAVFTAHNAGFDHGFLNASFQRFGLGPIG-NPVLCTIDL 187

Query: 130 ARRKHPSSRNDLNSLCKR--YGITISHRSKHGALLDSHLL 167
           ARR   S R  L  L +    G+   HR+ + AL  S +L
Sbjct: 188 ARRTFESERYGLAYLNESLDLGMQAHHRAYNDALAASKVL 227


>gi|296110428|ref|YP_003620809.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc
           kimchii IMSNU 11154]
 gi|295831959|gb|ADG39840.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc
           kimchii IMSNU 11154]
          Length = 1437

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL +  D+IIE+ AV+ +        F  ++ P G   S    KL  ITD  
Sbjct: 420 VAFDLETTGLSAVTDKIIELSAVK-MQLGNVIEKFSEYINP-GFPLSDFTTKLTSITDTM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    +  +I + F  +  +  A  I HN  FD+GF+NA   R N+  +  + +IDTL  
Sbjct: 478 VAHADTEENIITRFRKWIGD--AVLIGHNVTFDIGFMNAAYARYNQTVIK-NPVIDTLPF 534

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
            R  +P  ++  L +L KR+ I +     H A+ D+
Sbjct: 535 TRWLYPDYKSYRLGTLAKRFNINLEQ--AHRAIFDA 568


>gi|193215454|ref|YP_001996653.1| DNA polymerase III subunit epsilon [Chloroherpeton thalassium ATCC
           35110]
 gi|193088931|gb|ACF14206.1| DNA polymerase III, epsilon subunit [Chloroherpeton thalassium ATCC
           35110]
          Length = 229

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 16/175 (9%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R +VFD ETTGLD K D+II IGAV + D++ +   +F+  +      +  E++ +HGI
Sbjct: 42  VRFVVFDTETTGLDVKKDKIISIGAVAISDFAIQVADSFETLIRQEASGDK-ESIPVHGI 100

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             + L    +       F  +     +  +AH+A FD+  +N  L R   D    + +ID
Sbjct: 101 LKKDLAMAATEQGALESFLSYI--AGSVLVAHHAMFDIEILNQALGRFF-DLKIFNAVID 157

Query: 126 TLSIARR--KHPSSRND-------LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           T   A+R  K P S  D       L+ LC+RY I I  R  H A  D+ + + ++
Sbjct: 158 TADFAKRIEKGPFSSQDTKAGDYSLDKLCERYRIPIYDR--HTAPGDAFITAQLF 210


>gi|120406462|ref|YP_956291.1| DNA polymerase III subunit epsilon [Mycobacterium vanbaalenii
           PYR-1]
 gi|119959280|gb|ABM16285.1| DNA polymerase III, epsilon subunit [Mycobacterium vanbaalenii
           PYR-1]
          Length = 333

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 11/168 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RI+ + A+ L D     ++    L P      P    +HG+T E L
Sbjct: 22  VVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPG---VDPGPTHVHGLTAEML 78

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
             +P+F  +  +  +    +    +AHN  FD  F+ AE + ++ + P+D   ++ T+ +
Sbjct: 79  AGQPAFGDVVGDLIEVLRGRT--LVAHNVGFDYSFLTAEAEMVHAELPVD--TVMCTVEL 134

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ARR      N  L +L   +G+T      H AL D+ +L+ +   ++V
Sbjct: 135 ARRLDLGLDNLRLETLAAHWGVT--QMKPHDALDDAMVLAQILKPVLV 180


>gi|254505589|ref|ZP_05117736.1| DNA polymerase III PolC-type [Vibrio parahaemolyticus 16]
 gi|219551706|gb|EED28684.1| DNA polymerase III PolC-type [Vibrio parahaemolyticus 16]
          Length = 204

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 5/106 (4%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV+L++    + TFQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPNMGDRAIEIGAVKLVNGEVVD-TFQQLMNP-GFRVSSFIEGYTGITNV 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            L+D PS   + ++F  F   +N   +AHNA FD  F++ EL+R+N
Sbjct: 66  MLRDAPSCDEVMAQFAQFIAGEN--LVAHNASFDKRFLDDELERVN 109


>gi|228998363|ref|ZP_04157954.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17]
 gi|228761284|gb|EEM10239.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17]
          Length = 315

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 15/168 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  NDRII++ AV   ++   ++ F  F+ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDRIIQVAAVRYRNHELADQ-FVSFVNPE-RFIPNRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127
           + D P+   +   F  F  E     +AHNA FD+ F+  NA + R+   P   + +IDT+
Sbjct: 69  VSDAPTIQEVLPLFLAFLGEDTI--VAHNASFDMRFLKSNANMLRL---PEPKNIVIDTV 123

Query: 128 SIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +A+R  KH +  + L +L +  GI +   S H AL D    + VY K
Sbjct: 124 FLAKRYMKH-APNHKLETLKRMLGICL---SSHNALDDCITCAAVYQK 167


>gi|261856008|ref|YP_003263291.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus
           c2]
 gi|261836477|gb|ACX96244.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus
           c2]
          Length = 481

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 9/160 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             DIETTG  ++ DRI EIG V  L    T   +   + P G         L GIT+E +
Sbjct: 23  CLDIETTGSHTERDRITEIGIVT-LHPDGTQSNWSCLIHP-GCAIPARITTLTGITNEMV 80

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D+P F+       +    +N   IAHNA+FD+GF+    +R      +PS ++ ++ ++
Sbjct: 81  ADQPVFAHRAQALLERL--ENHIVIAHNARFDLGFLKQAFRREGIR-FNPS-VLCSVKLS 136

Query: 131 RRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           R+  P+  R++L+S+ +R G++ +  ++H AL D+ +++D
Sbjct: 137 RQMFPAERRHNLDSVMQRMGLSCA--ARHRALGDAAVVAD 174


>gi|117920694|ref|YP_869886.1| DNA polymerase III subunit epsilon [Shewanella sp. ANA-3]
 gi|117613026|gb|ABK48480.1| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3]
          Length = 229

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 10/184 (5%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL  ++  R IEIGAV L++  +    F   + P  R NS       GI+++
Sbjct: 31  VVLDFETSGLSPNQGARAIEIGAV-LIEQGQITARFSELMNPGFRINS-FIEDYTGISNQ 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L      + + + F +F  + +   +AHNA FD  F++AE  +I      P +   +L 
Sbjct: 89  MLAHAAPCAEVMARFAEFIGKHH--LVAHNATFDQRFLDAEFSQIGHQ--YPGQFGCSLL 144

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +ARR +P + N   +   R+    ++ + H AL D+ +   ++++M+    Q   G+   
Sbjct: 145 LARRLYPEAINHQLATLVRHKQLPTNGTYHRALADAEMTGHLWLRMLADLKQ---GYAIT 201

Query: 189 EDRF 192
           E  F
Sbjct: 202 EPPF 205


>gi|329901259|ref|ZP_08272784.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549191|gb|EGF33783.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 462

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 99/183 (54%), Gaps = 14/183 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGIT 66
           R    D+ETTG  +  DRI E+G VE+ +    + +  V    N  ++ PE ++ L GI+
Sbjct: 9   RLAFVDLETTGATAVIDRITEVGIVEVDEDGVRHWSSLV----NPHRHIPEFIEGLTGIS 64

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + D P F  + +E       +   ++AHNA+FD GF+  E +R+  D   P+ ++ T
Sbjct: 65  NAMVADAPGFDELAAEIHQRL--EGRIFLAHNARFDHGFLKNEFKRVGID-FRPT-VLCT 120

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMMVGGSQINF 183
           + ++R+ +P  ++++L++L +R+ + ++ R  H AL D+ L+   +  I      +QIN 
Sbjct: 121 VKLSRKLYPEFAKHNLDTLAERHQLQVTER--HRALGDAQLIWQFWETIHTTFPHAQINA 178

Query: 184 GFK 186
             K
Sbjct: 179 AIK 181


>gi|54302908|ref|YP_132901.1| putative DNA polymerase III [Photobacterium profundum SS9]
 gi|46916332|emb|CAG23101.1| putative DNA polymerase III [Photobacterium profundum SS9]
          Length = 214

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 15/171 (8%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL  ++ DR IEIGAV L++  +    FQ  + P G + S       GIT+ 
Sbjct: 16  IVLDFETTGLSPTQGDRAIEIGAV-LMENGEVVDRFQKLMNP-GFRVSSFIESYTGITNN 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+       +  +F DF  + N   +AHNA FD  F++AEL  IN+          ++ 
Sbjct: 74  MLRTAAPCDEVMDQFTDFIGDYN--LVAHNASFDKRFLDAELDIINRSY--GGEFACSML 129

Query: 129 IARRKHPSSRND-LNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKMM 175
           IARR + ++ N  L SL     I    + HR    AL DS + + ++++M+
Sbjct: 130 IARRLYQNAPNHKLGSLVAYKNIDHDGVFHR----ALADSEMTAKLWLQML 176


>gi|71893884|ref|YP_279330.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae J]
 gi|71852011|gb|AAZ44619.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J]
          Length = 1468

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 93/174 (53%), Gaps = 17/174 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +K++ ++FD+ETTGL +  + I+E GAV L +  +  +  Q F+ P G K  P   K+ G
Sbjct: 406 DKLKFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKH-QFFIKPTG-KIPPAITKITG 463

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE------QNAEWIAHNAKFDVGFINAELQRINKDPL 118
           I+ + + D+ + S      W+   E      +++  +AHNA FD  F+    ++  K  L
Sbjct: 464 ISQKMI-DETAIS------WEIALEKITKIIKDSVLVAHNAAFDFSFLEQFFRQKAKKSL 516

Query: 119 DPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             + IIDTL ++R  +P+ + + L ++ KRY I       H A  D+ +L+ ++
Sbjct: 517 K-NPIIDTLEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIW 569


>gi|189346782|ref|YP_001943311.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245]
 gi|189340929|gb|ACD90332.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245]
          Length = 205

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 26/191 (13%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLH 63
           +++R +VFD ETTG D K D+II IGA+ L     +   +F+V L    +    +A+ +H
Sbjct: 14  SEVRFVVFDTETTGFDLKTDKIISIGAIALTAQRIEVGDSFEV-LVRQEKVGDRDAVSVH 72

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPL 118
           G+  + +       S  + F D+    N+  +A +A FD+  +N  L      R+  D  
Sbjct: 73  GLLRKDIASGIDEKSAVTAFLDYIG--NSVLVAQHAGFDITMVNRVLWKHFGIRLFND-- 128

Query: 119 DPSRIIDTLSIARR---------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
               ++DT S+A+R          H +    L++LC+RY I +  R  H +  D++L + 
Sbjct: 129 ----VVDTASLAKRLEKGPYYNLAHKAGEYRLDNLCERYNIRLHDR--HTSAGDAYLTAQ 182

Query: 170 VYIKMMVGGSQ 180
           ++ +++  G +
Sbjct: 183 LFQRLLAKGKK 193


>gi|310827165|ref|YP_003959522.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
 gi|308738899|gb|ADO36559.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
          Length = 1369

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL    D IIEI AV++ +    + TF   + P+ R   P    L GIT++ 
Sbjct: 355 VFFDLETTGLIPGKDNIIEIAAVKIKNKHIVD-TFSKIVNPH-RPIPPFITNLTGITNQM 412

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTLS 128
           ++D     +    F +F    +   +AHNAKFD+GF+   L   N   L+ +   IDTL+
Sbjct: 413 VEDGEEEEAAVKAFCEFCG--DLILVAHNAKFDMGFMEIAL---NAHHLENNITYIDTLA 467

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R   P+ ++++L  L   + + + H   H AL DS   + +++K+M
Sbjct: 468 MSRTLIPTINKHNLKKLASYFKVDMGHH--HRALDDSVCSAKIFVKLM 513


>gi|31793370|ref|NP_855863.1| hypothetical protein Mb2214 [Mycobacterium bovis AF2122/97]
 gi|121638072|ref|YP_978296.1| hypothetical protein BCG_2207 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224990566|ref|YP_002645253.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|31618962|emb|CAD97067.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493720|emb|CAL72195.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224773679|dbj|BAH26485.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 645

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 35/225 (15%)

Query: 10  IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ETTG  +        D I EIGAV++   +     F   + P      P+ ++L 
Sbjct: 44  VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRLT 101

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   + + P+  ++   F++F    ++  +AHNA FD+GF+ A  +R +     P ++
Sbjct: 102 GITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDITWPQP-QV 158

Query: 124 IDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176
           + T+ +ARR     + PS R  L +L + +   ++    H AL D+    DV   ++  V
Sbjct: 159 LCTMRLARRVLSRDEAPSVR--LAALARLF--AVASNPTHRALDDARATVDVLHALIERV 214

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           G    N G  T     + E +  +PN++  +R K    R+  E L
Sbjct: 215 G----NQGVHT-----YAELRSYLPNVTQAQRCK----RVLAETL 246


>gi|304406903|ref|ZP_07388557.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
           curdlanolyticus YK9]
 gi|304343890|gb|EFM09730.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
           curdlanolyticus YK9]
          Length = 957

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  V D+ETTG  ++ D +I+IG V L +      TF  F+ P      P   +L GIT
Sbjct: 1   MKFAVLDLETTGHQAE-DEMIQIGIVMLDEELNVTDTFSSFVRP-ATDIPPFITQLTGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E + D PS   + ++      +  A  +AHN  FD  F+N  L R    P    R +DT
Sbjct: 59  NEMVADAPSVEDVLTDVVKLLGD--AVLVAHNVGFDAHFMNRALDRCGYSPFTGRR-LDT 115

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           + + R  +P+     L ++ + +GIT  H  KH A  D+
Sbjct: 116 IDLLRMLYPTLPSYQLGAVSEAFGIT--HERKHQADSDA 152


>gi|227486439|ref|ZP_03916755.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235620|gb|EEI85635.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
          Length = 1463

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 13/168 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL    D I EIGAV  ++  +   T+   + P  R    + +++ GITD  
Sbjct: 449 VVFDIETTGLLKYRDAITEIGAVR-VENGEITETYNQLINPE-RILPEKIVEITGITDAM 506

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--DPLDPSRIIDTL 127
           L DKP    +   F DF    ++  +  N  FDVGFI    +R+    DP+     +DTL
Sbjct: 507 LADKPKIDEVLPGFLDFCG--DSLIVGQNTDFDVGFIRENAKRLGLKFDPI----YLDTL 560

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +AR       +  L+ + ++  + I   + H A  D+   + ++IKM
Sbjct: 561 PMARALFDDMGKFSLDKIARK--LDIPAFNHHRASDDARATAQIFIKM 606


>gi|254232344|ref|ZP_04925671.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|289750785|ref|ZP_06510163.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|124601403|gb|EAY60413.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|289691372|gb|EFD58801.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|323719091|gb|EGB28236.1| hypothetical protein TMMG_01471 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 647

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 35/225 (15%)

Query: 10  IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ETTG  +        D I EIGAV++   +     F   + P      P+ ++L 
Sbjct: 46  VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRLT 103

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   + + P+  ++   F++F    ++  +AHNA FD+GF+ A  +R +     P ++
Sbjct: 104 GITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDITWPQP-QV 160

Query: 124 IDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176
           + T+ +ARR     + PS R  L +L + +   ++    H AL D+    DV   ++  V
Sbjct: 161 LCTMRLARRVLSRDEAPSVR--LAALARLF--AVASNPTHRALDDARATVDVLHALIERV 216

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           G    N G  T     + E +  +PN++  +R K    R+  E L
Sbjct: 217 G----NQGVHT-----YAELRSYLPNVTQAQRCK----RVLAETL 248


>gi|15841682|ref|NP_336719.1| hypothetical protein MT2247 [Mycobacterium tuberculosis CDC1551]
 gi|289754299|ref|ZP_06513677.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|308232063|ref|ZP_07414780.2| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis
           SUMu001]
 gi|308369651|ref|ZP_07418557.2| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis
           SUMu002]
 gi|308370940|ref|ZP_07423289.2| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis
           SUMu003]
 gi|308372166|ref|ZP_07427656.2| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis
           SUMu004]
 gi|308373349|ref|ZP_07431961.2| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis
           SUMu005]
 gi|308374520|ref|ZP_07436352.2| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis
           SUMu006]
 gi|308375805|ref|ZP_07668121.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis
           SUMu007]
 gi|308376938|ref|ZP_07668388.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis
           SUMu008]
 gi|308377937|ref|ZP_07480989.2| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis
           SUMu009]
 gi|308379142|ref|ZP_07485216.2| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis
           SUMu010]
 gi|308380293|ref|ZP_07489432.2| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis
           SUMu011]
 gi|308404461|ref|ZP_07493965.2| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis
           SUMu012]
 gi|13881937|gb|AAK46533.1| DNA polymerase III, epsilon subunit, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|289694886|gb|EFD62315.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|308215084|gb|EFO74483.1| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis
           SUMu001]
 gi|308326837|gb|EFP15688.1| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis
           SUMu002]
 gi|308330190|gb|EFP19041.1| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis
           SUMu003]
 gi|308334026|gb|EFP22877.1| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis
           SUMu004]
 gi|308337834|gb|EFP26685.1| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis
           SUMu005]
 gi|308341594|gb|EFP30445.1| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis
           SUMu006]
 gi|308345002|gb|EFP33853.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis
           SUMu007]
 gi|308349313|gb|EFP38164.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis
           SUMu008]
 gi|308354021|gb|EFP42872.1| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis
           SUMu009]
 gi|308357963|gb|EFP46814.1| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis
           SUMu010]
 gi|308361897|gb|EFP50748.1| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis
           SUMu011]
 gi|308365560|gb|EFP54411.1| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis
           SUMu012]
          Length = 637

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 35/225 (15%)

Query: 10  IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ETTG  +        D I EIGAV++   +     F   + P      P+ ++L 
Sbjct: 36  VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRLT 93

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   + + P+  ++   F++F    ++  +AHNA FD+GF+ A  +R +     P ++
Sbjct: 94  GITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDITWPQP-QV 150

Query: 124 IDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176
           + T+ +ARR     + PS R  L +L + +   ++    H AL D+    DV   ++  V
Sbjct: 151 LCTMRLARRVLSRDEAPSVR--LAALARLF--AVASNPTHRALDDARATVDVLHALIERV 206

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           G    N G  T     + E +  +PN++  +R K    R+  E L
Sbjct: 207 G----NQGVHT-----YAELRSYLPNVTQAQRCK----RVLAETL 238


>gi|116672512|ref|YP_833445.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24]
 gi|116612621|gb|ABK05345.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24]
          Length = 406

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 110/256 (42%), Gaps = 37/256 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTGL   N RI EI  V +  D + +NR ++  + P  R   P+   +HGI    
Sbjct: 7   VVDVETTGLFPGNHRIAEIAVVHVDPDGTVSNR-WETLVNPQ-RDLGPQ--HIHGIRAAD 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128
           +   P F  I  +  +    +    +AHN  FD  F++ EL R   + P +    + T+ 
Sbjct: 63  ILHAPVFGDIAHDVMELLAGR--VLVAHNVHFDYRFVSHELGRAGLELPFEVHDCLCTMK 120

Query: 129 IARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +ARR  P +   L   C  +G+ +  +H +   A   +H+LS+ Y++M  G  +    F 
Sbjct: 121 LARRYLPGAGRSLKDCCDSFGLNLANAHSAGDDAEAAAHVLSN-YLRMDSGNPEW---FS 176

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL-----------------DEHDKTIQ 229
             +  +F       P     KR +P   R   E                   DEH+  + 
Sbjct: 177 ALDRAYFSSWPAVEP-----KRRQPALRRPAGEPQTHFLERLVNRLPEVAGPDEHNAYLA 231

Query: 230 TLGKNAIWDRYISSNQ 245
            L + A+ DR IS ++
Sbjct: 232 MLDR-ALMDRQISVSE 246


>gi|18309405|ref|NP_561339.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13]
 gi|18144081|dbj|BAB80129.1| probable ATP-dependent DNA helicase [Clostridium perfringens str.
           13]
          Length = 870

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 14/159 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+E+TG+D   D II+I A++L    +    F+ FL    +K   ++  +HG +DE 
Sbjct: 505 IVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFL--KNKKPVKDSYYVHGFSDEM 562

Query: 70  LK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           L+    DK     +  EF ++   +++  + HN ++D+  + +EL+R N          D
Sbjct: 563 LQRIGEDK---EKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFKTFYD 617

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163
           TL I RR +P + N  L +L K Y     H+  H A+ D
Sbjct: 618 TLDIYRRFYPGNINYKLENLSKVYD--TKHKPSHDAMDD 654


>gi|260205487|ref|ZP_05772978.1| hypothetical protein MtubK8_14429 [Mycobacterium tuberculosis K85]
 gi|289574877|ref|ZP_06455104.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289539308|gb|EFD43886.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
          Length = 645

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 35/225 (15%)

Query: 10  IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ETTG  +        D I EIGAV++   +     F   + P      P+ ++L 
Sbjct: 44  VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRLT 101

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   + + P+  ++   F++F    ++  +AHNA FD+GF+ A  +R +     P ++
Sbjct: 102 GITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDITWPQP-QV 158

Query: 124 IDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176
           + T+ +ARR     + PS R  L +L + +   ++    H AL D+    DV   ++  V
Sbjct: 159 LCTMRLARRVLSRDEAPSVR--LAALARLF--AVASNPTHRALDDARATVDVLHALIERV 214

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           G    N G  T     + E +  +PN++  +R K    R+  E L
Sbjct: 215 G----NQGVHT-----YAELRSYLPNVTQAQRCK----RVLAETL 246


>gi|109898663|ref|YP_661918.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
           T6c]
 gi|109700944|gb|ABG40864.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
           T6c]
          Length = 769

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 9/164 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG      RI EIGAV+++D SK   ++   + P  R+      +L GI+++ 
Sbjct: 605 VVVDVETTGGCKPGHRITEIGAVKVID-SKVVDSWSSLINPE-RRVPHFITRLTGISNDM 662

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D P F  +  +   F   Q+  ++AHN  FD GF   E  R+ +    P   + T+  
Sbjct: 663 VEDAPLFCEVIDDLEAFM--QDCIFVAHNVNFDYGFFKLEYGRLERAFSMPK--LCTVRE 718

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            R+ +P S +  L  L K YG+++ +   H AL D+   +++ I
Sbjct: 719 MRKYYPGSPSYSLGKLSKEYGLSLDNH--HRALCDAQAAAELLI 760


>gi|147814790|emb|CAN74413.1| hypothetical protein VITISV_042394 [Vitis vinifera]
          Length = 340

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 68/142 (47%), Gaps = 13/142 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD ETTGL   NDRIIEIG  +L      N TFQ  + P     +P    +HGIT   
Sbjct: 137 IVFDTETTGLSRANDRIIEIGLQDL--GGGENSTFQTLVNPERIVPNPH---VHGITTYM 191

Query: 70  L--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121
           +   D P +  +      +   +        W+AHN + FDV F+  E  R N +     
Sbjct: 192 VNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPNW 251

Query: 122 RIIDTLSIARRKHPSSRNDLNS 143
           R +DTL +AR    S+ +DL S
Sbjct: 252 RFMDTLPLAREFIKSAGSDLPS 273


>gi|15609328|ref|NP_216707.1| hypothetical protein Rv2191 [Mycobacterium tuberculosis H37Rv]
 gi|148662008|ref|YP_001283531.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra]
 gi|148823398|ref|YP_001288152.1| hypothetical protein TBFG_12219 [Mycobacterium tuberculosis F11]
 gi|167969416|ref|ZP_02551693.1| hypothetical protein MtubH3_15860 [Mycobacterium tuberculosis
           H37Ra]
 gi|215403581|ref|ZP_03415762.1| hypothetical protein Mtub0_07840 [Mycobacterium tuberculosis
           02_1987]
 gi|215411916|ref|ZP_03420690.1| hypothetical protein Mtub9_11341 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215427566|ref|ZP_03425485.1| hypothetical protein MtubT9_14751 [Mycobacterium tuberculosis T92]
 gi|215431125|ref|ZP_03429044.1| hypothetical protein MtubE_10707 [Mycobacterium tuberculosis
           EAS054]
 gi|215446420|ref|ZP_03433172.1| hypothetical protein MtubT_10948 [Mycobacterium tuberculosis T85]
 gi|219558170|ref|ZP_03537246.1| hypothetical protein MtubT1_13062 [Mycobacterium tuberculosis T17]
 gi|253798744|ref|YP_003031745.1| hypothetical protein TBMG_04035 [Mycobacterium tuberculosis KZN
           1435]
 gi|254551229|ref|ZP_05141676.1| hypothetical protein Mtube_12318 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187187|ref|ZP_05764661.1| hypothetical protein MtubCP_14313 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201308|ref|ZP_05768799.1| hypothetical protein MtubT4_14636 [Mycobacterium tuberculosis T46]
 gi|289443698|ref|ZP_06433442.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289447819|ref|ZP_06437563.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289554022|ref|ZP_06443232.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289570307|ref|ZP_06450534.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289745464|ref|ZP_06504842.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
           02_1987]
 gi|294993576|ref|ZP_06799267.1| hypothetical protein Mtub2_03474 [Mycobacterium tuberculosis 210]
 gi|297634780|ref|ZP_06952560.1| hypothetical protein MtubK4_11686 [Mycobacterium tuberculosis KZN
           4207]
 gi|297731771|ref|ZP_06960889.1| hypothetical protein MtubKR_11808 [Mycobacterium tuberculosis KZN
           R506]
 gi|298525683|ref|ZP_07013092.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|313659105|ref|ZP_07815985.1| hypothetical protein MtubKV_11818 [Mycobacterium tuberculosis KZN
           V2475]
 gi|1722908|sp|Q10384|Y2191_MYCTU RecName: Full=Uncharacterized protein Rv2191/MT2247
 gi|1237044|emb|CAA94260.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148506160|gb|ABQ73969.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra]
 gi|148721925|gb|ABR06550.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|253320247|gb|ACT24850.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289416617|gb|EFD13857.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289420777|gb|EFD17978.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289438654|gb|EFD21147.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289544061|gb|EFD47709.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289685992|gb|EFD53480.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
           02_1987]
 gi|298495477|gb|EFI30771.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|326903805|gb|EGE50738.1| DNA polymerase III [Mycobacterium tuberculosis W-148]
 gi|328458507|gb|AEB03930.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 645

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 35/225 (15%)

Query: 10  IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ETTG  +        D I EIGAV++   +     F   + P      P+ ++L 
Sbjct: 44  VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRLT 101

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   + + P+  ++   F++F    ++  +AHNA FD+GF+ A  +R +     P ++
Sbjct: 102 GITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDITWPQP-QV 158

Query: 124 IDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176
           + T+ +ARR     + PS R  L +L + +   ++    H AL D+    DV   ++  V
Sbjct: 159 LCTMRLARRVLSRDEAPSVR--LAALARLF--AVASNPTHRALDDARATVDVLHALIERV 214

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           G    N G  T     + E +  +PN++  +R K    R+  E L
Sbjct: 215 G----NQGVHT-----YAELRSYLPNVTQAQRCK----RVLAETL 246


>gi|54020575|ref|YP_116058.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae 232]
 gi|53987748|gb|AAV27949.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 232]
          Length = 1469

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 93/174 (53%), Gaps = 17/174 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +K++ ++FD+ETTGL +  + I+E GAV L +  +  +  Q F+ P G K  P   K+ G
Sbjct: 407 DKLKFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKH-QFFIKPTG-KIPPAITKITG 464

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE------QNAEWIAHNAKFDVGFINAELQRINKDPL 118
           I+ + + D+ + S      W+   E      +++  +AHNA FD  F+    ++  K  L
Sbjct: 465 ISQKMI-DETAIS------WEIALEKITKIIKDSVLVAHNAAFDFSFLEQFFRQKAKKSL 517

Query: 119 DPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             + IIDTL ++R  +P+ + + L ++ KRY I       H A  D+ +L+ ++
Sbjct: 518 K-NPIIDTLEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIW 570


>gi|229818165|ref|ZP_04448447.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM
           20098]
 gi|229784416|gb|EEP20530.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM
           20098]
          Length = 186

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 7/166 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG+    DRIIEIGAV  +++      +   + P GR        L GI+DE 
Sbjct: 20  VVVDLETTGISPARDRIIEIGAVR-VEHGTVTAEYSKLVNP-GRPVGGFITGLTGISDEM 77

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + +     ++  +F       +   +AHNA FD+ F+     R    P      IDTL +
Sbjct: 78  VGNASPIEAVLPDFLAHLRPSDT-IVAHNANFDINFLYDNCMRTLGKPFS-YDFIDTLRL 135

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  R   L  L +R+G  I+   +H  L D+    + Y +M
Sbjct: 136 SRALFPQERQHRLVDLIQRFG--IADEEEHRGLSDALQTVECYERM 179


>gi|218753913|ref|ZP_03532709.1| hypothetical protein MtubG1_10964 [Mycobacterium tuberculosis GM
           1503]
          Length = 493

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 35/225 (15%)

Query: 10  IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ETTG  +        D I EIGAV++   +     F   + P      P+ ++L 
Sbjct: 36  VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRLT 93

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   + + P+  ++   F++F    ++  +AHNA FD+GF+ A  +R +     P ++
Sbjct: 94  GITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDITWPQP-QV 150

Query: 124 IDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176
           + T+ +ARR     + PS R  L +L + +   ++    H AL D+    DV   ++  V
Sbjct: 151 LCTMRLARRVLSRDEAPSVR--LAALARLFA--VASNPTHRALDDARATVDVLHALIERV 206

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           G    N G  T     + E +  +PN++  +R K    R+  E L
Sbjct: 207 G----NQGVHT-----YAELRSYLPNVTQAQRCK----RVLAETL 238


>gi|51892650|ref|YP_075341.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
           14863]
 gi|51856339|dbj|BAD40497.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
           14863]
          Length = 1475

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 20/173 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V DIETTG     D IIE+GAV     E++D      +FQ F+ P  +   PE  KL  
Sbjct: 455 VVLDIETTGFSPIGDDIIELGAVRCRGGEIVD------SFQSFVRPT-KPVPPEVQKLTN 507

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRI 123
           IT + L+  P  +     F+ F  +  A  +AHNA+FD  F+    Q+ + ++  +P  +
Sbjct: 508 ITPDMLEGAPEAAEALRAFFQFVGD--AIVVAHNAQFDYSFLRYHRQKYLGEEFANP--V 563

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DTL++AR   P  R+  L +L K   + +     H A  D+   + V +K++
Sbjct: 564 LDTLTLARAVLPHMRSHSLAALTKELQVPLV--DHHRADADAKTAAMVLMKLL 614


>gi|227501930|ref|ZP_03931979.1| possible exonuclease [Corynebacterium accolens ATCC 49725]
 gi|227077314|gb|EEI15277.1| possible exonuclease [Corynebacterium accolens ATCC 49725]
          Length = 1118

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 11/176 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG  S  DR+IEIG V LLD+++    T++  + P  +++ P +  +H IT
Sbjct: 6   RYAVVDFETTGFGS-TDRVIEIGVV-LLDHNREVESTWETLVQP--QRDIPNSF-VHRIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIID 125
              + D P F  +  EF++  N +    +AHNA F+V F+  E   +    P   + ++D
Sbjct: 61  PTDVVDAPLFGEVAGEFFELLNGRTV--VAHNAPFEVRFLQREFSNLGVAWPNYGAWVVD 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           T  + ++ +P     L    +  GIT  +   H AL D+   ++++ +++  G+ +
Sbjct: 119 TKRLFQQTYPGEGTTLEHALEVVGIT--NARPHSALADALATAELFAQLVSQGTDV 172


>gi|271964195|ref|YP_003338391.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507370|gb|ACZ85648.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 574

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 13/184 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG+ +    I EIGAV++    +    F   + P G    P    L GITD  
Sbjct: 22  VVFDLETTGVSAGEHAITEIGAVKVRG-GEVLGEFGTLVDP-GSPIPPFISVLTGITDTM 79

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P   S+   F +F   +    +AHNA FD+GFI A     +  P     ++DT+ +
Sbjct: 80  VVAAPKIESVLPSFLEF--AEGTTLVAHNAGFDLGFIKAACA-AHGYPPPAHPVVDTVVL 136

Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           AR+   +  +    L++L + +  T     +H AL D+    DV   ++      +FG  
Sbjct: 137 ARKLLTRDEAPNCKLSTLARIFSKT---EPRHRALADAQATVDVLHALLERAG--SFGVH 191

Query: 187 TNED 190
           T E+
Sbjct: 192 TLEE 195


>gi|119476123|ref|ZP_01616475.1| exonuclease [marine gamma proteobacterium HTCC2143]
 gi|119450750|gb|EAW31984.1| exonuclease [marine gamma proteobacterium HTCC2143]
          Length = 216

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 9/169 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV L      +R FQ  + P G++ S       GIT+ 
Sbjct: 7   VVLDFETTGLSPDAGDRAIEIGAVRLESGEVVDR-FQALMNP-GQRVSGFIEDHTGITNT 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +    + +  +F DF    N   +AHNA FD  F++AEL RI++          +L 
Sbjct: 65  MLANSDHSAKVMHQFADFIEGHN--LVAHNASFDKRFLDAELARISRSY--SGDFSCSLL 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +RR +  + N  L +L K  GI  S    H AL DS +   +++ ++ 
Sbjct: 121 ASRRIYQQAPNHQLGTLIKYTGIA-STGDFHRALYDSEMTVKLWLHLLA 168


>gi|229820392|ref|YP_002881918.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM
           12333]
 gi|229566305|gb|ACQ80156.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM
           12333]
          Length = 590

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 20/201 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG     D I EIGAV +             + P GR   P    L GIT+  
Sbjct: 33  VVVDLETTGGSPNADAITEIGAVRVRG-GVVEGELGTLVDP-GRSIPPTITVLTGITNAM 90

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSRIIDT 126
           +   P    +   F +F +   A  +AHNA+FD GF+    +R+      PL    ++DT
Sbjct: 91  VIGAPPIEEVLPSFLEFAH--GAVLVAHNARFDTGFLRVAAERMGLTWPKPL----VVDT 144

Query: 127 LSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           + +ARR   +  +  + L SL + +  +++    H AL D+    DV   ++   + +  
Sbjct: 145 VQLARRVVSRDEAPNHRLGSLARLFHASVT--PDHRALTDARATVDVLHGLLARMAPLGV 202

Query: 184 G----FKTNEDRFFKEEKKTV 200
                 +T  D    E ++ V
Sbjct: 203 THLEDLRTAGDSVPPERRRKV 223


>gi|167816919|ref|ZP_02448599.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 91]
          Length = 346

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 10/163 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTG  +   RI EIG V +++ + T+ T+   + P  +   P   +L GITD  ++ 
Sbjct: 19  DLETTGGSAAEHRITEIGVV-VVNANGTS-TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P+F+ I    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ ++R 
Sbjct: 76  APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131

Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P  SR+ L++L +R+ +  S R  H AL D+ L+   + K+
Sbjct: 132 LFPRESRHGLDALIERHALAPSAR--HRALADADLIWQFWQKL 172


>gi|308049989|ref|YP_003913555.1| RNAse T [Ferrimonas balearica DSM 9799]
 gi|307632179|gb|ADN76481.1| RNAse T [Ferrimonas balearica DSM 9799]
          Length = 222

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L      + + ++T    + P  G    P AL+ +G
Sbjct: 20  VVIDVETAGFNAQTDALLEIAAVTLKMDEQGWLQPDQTIHFHVAPFEGANLEPAALEFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFFNE-QNAEW------IAHNAKFDVGFINAELQR--I 113
           ITD F  L+   S     SE +    + Q A        +AHNA FD  F+NA  +R  +
Sbjct: 80  ITDPFSALRGAVSEREALSEIFKLVRKGQKAAGCNRSIIVAHNATFDQSFVNAASERTKM 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++       +  L   C+  GI   ++  H AL D+   ++++  
Sbjct: 140 KRVPFHPFGTFDTAALSGLAL--GQTVLAKACRAAGIPFDNKEAHSALYDTQRTAELFCY 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|194334228|ref|YP_002016088.1| DNA-directed DNA polymerase [Prosthecochloris aestuarii DSM 271]
 gi|194312046|gb|ACF46441.1| DNA-directed DNA polymerase [Prosthecochloris aestuarii DSM 271]
          Length = 180

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 21/170 (12%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLH 63
           R I  D+ETTGL  +  DR+IE+ AV ++     N   +   C     N+P      K+H
Sbjct: 12  RVIAVDVETTGLSPRRGDRVIEVAAVAIV-----NGVIEEHFCCLINVNAPIPTVVQKIH 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E L  +    +++ EF  F        IAHNA FD+ FI  EL+ +    L+ S+ 
Sbjct: 67  GITPELLAGEKPPEAVWPEFLKFIGSN--ILIAHNAPFDISFIRNELRFLGLSLLNGSQC 124

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRY------GITISHRSKHGALLDSHL 166
             TL+ +R+K P  +N  L ++ +        GI + HR+   ALL + +
Sbjct: 125 --TLAFSRKKFPQLKNHKLENVARHVLGGMPKGIKL-HRASGDALLTAMI 171


>gi|53720167|ref|YP_109153.1| DNA polymerase/helicase [Burkholderia pseudomallei K96243]
 gi|52210581|emb|CAH36564.1| possible DNA polymerase/helicase [Burkholderia pseudomallei K96243]
          Length = 381

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 91/163 (55%), Gaps = 10/163 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTG  +   RI EIG V +++ + T+ T+   + P  +   P   +L GITD  ++ 
Sbjct: 19  DLETTGGSAAEHRITEIGVV-VVNANGTS-TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P+F+ I    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ ++R 
Sbjct: 76  APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131

Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|290580136|ref|YP_003484528.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025]
 gi|254997035|dbj|BAH87636.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025]
          Length = 300

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 10/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIET GLD   + IIEIGAV+ +D S+    F  +L    +    +  KL GI+ E 
Sbjct: 132 VVIDIETDGLDENENSIIEIGAVK-IDPSQLEE-FN-YLVKYDKILPKQISKLTGISQEL 188

Query: 70  L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L +D      +  EF +F    N + + +   FD+ FIN +L+ +N+ PL  +R+ D + 
Sbjct: 189 LDRDGKDLQVVLQEFLNFIG--NHDLVGYGINFDIKFINKKLKELNQ-PLLKNRVYDLMQ 245

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            A+++     N  L ++ K Y   I     H AL DS L+ D+  KM
Sbjct: 246 YAKKEKLFLDNYKLQTVLKAY--EIEDEVPHRALHDSKLIYDLSTKM 290


>gi|168209034|ref|ZP_02634659.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|170712869|gb|EDT25051.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens B str. ATCC 3626]
          Length = 870

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 14/159 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+E+TG+D   D II+I A++L    +    F+ FL    +K   ++  +HG +DE 
Sbjct: 505 IVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFL--KNKKPVKDSYYVHGFSDEM 562

Query: 70  LK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           L+    DK     +  EF ++   +++  + HN ++D+  + +EL+R N          D
Sbjct: 563 LQRIGEDK---EKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYD 617

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163
           TL I RR +P + N  L +L K Y     H+  H A+ D
Sbjct: 618 TLDIYRRFYPGNINYKLENLSKVYD--TKHKPSHDAMDD 654


>gi|126737494|ref|ZP_01753224.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. SK209-2-6]
 gi|126720887|gb|EBA17591.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. SK209-2-6]
          Length = 465

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 90/179 (50%), Gaps = 10/179 (5%)

Query: 2   IRKNKMRKI---VFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSP 57
           +R   +R +   VFD ETTGL    D I++IGA+ +++    N   F+  + P G     
Sbjct: 248 LRTRPLRSLSFTVFDTETTGLLPHKDEIVQIGALRVVNGRLVNGEGFETLVNP-GFDIPA 306

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            +  +HG+T E +++ P   +  + F  F   +++  +AHNA FD+ F+    +    D 
Sbjct: 307 ASTAVHGVTTEMVRNSPMIKTAGAAFHQFC--KDSVLVAHNAPFDIAFLRRHAKSSGVD- 363

Query: 118 LDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                ++DT+ ++     +S  + L++LC R  I I    +H A+ D+   ++  ++M+
Sbjct: 364 -WNHMVLDTVLLSAVIFGASVPHTLDALCDRLEINIPEALRHTAMGDAQATAEALLRML 421


>gi|303228659|ref|ZP_07315484.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Veillonella atypica ACS-134-V-Col7a]
 gi|302516639|gb|EFL58556.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 861

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 6/155 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+E+TG D+  DRII+I A+ +         F+ F+ P   K+   +  +HG TD +
Sbjct: 495 VVYDVESTGTDTTQDRIIQIAAMRIDKDGNEIERFERFINPG--KSVGTSQLVHGFTDAY 552

Query: 70  LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L +   S   +   F +F N  N   + HN  +D+  ++ EL R N        + DTL 
Sbjct: 553 LAEHGESPKVVLEAFKEFSN--NRIIVGHNVNYDISILSHELARHNLGEPQFKAVYDTLD 610

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           I RR +P+  N       +Y   I+H   H A+ D
Sbjct: 611 IFRRFYPTLENHKLGFLSKY-FPINHTPTHNAMDD 644


>gi|229825431|ref|ZP_04451500.1| hypothetical protein GCWU000182_00790 [Abiotrophia defectiva ATCC
           49176]
 gi|229789994|gb|EEP26108.1| hypothetical protein GCWU000182_00790 [Abiotrophia defectiva ATCC
           49176]
          Length = 223

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 9/158 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTG+  + D++IEI A+++ +  +T   F   + P  R     A +++GITDE +
Sbjct: 19  VFDLETTGVSPQTDKVIEISAIKVRN-GQTVGEFSSLVNPM-RGIPYGATRVNGITDEMV 76

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP F  +  +F DF   ++   + HN   FD+ FI+ + +   +  L  +  IDTL I
Sbjct: 77  ADKPVFEKVLGDFLDFV--EDDILVGHNIHDFDMKFIHRDCEAFFRMFLG-NDYIDTLPI 133

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           AR+  P    + L  L   Y I+I+    H AL D  +
Sbjct: 134 ARKCLPQLGHHRLTDLALYYKISIN--GAHRALNDCRM 169


>gi|52080748|ref|YP_079539.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus licheniformis ATCC 14580]
 gi|52786119|ref|YP_091948.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus licheniformis ATCC 14580]
 gi|319645294|ref|ZP_07999527.1| DinG protein [Bacillus sp. BT1B_CT2]
 gi|52003959|gb|AAU23901.1| ATP-dependent helicase [Bacillus licheniformis ATCC 14580]
 gi|52348621|gb|AAU41255.1| DinG [Bacillus licheniformis ATCC 14580]
 gi|317393103|gb|EFV73897.1| DinG protein [Bacillus sp. BT1B_CT2]
          Length = 930

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 95/174 (54%), Gaps = 11/174 (6%)

Query: 5   NKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KL 62
           N  R +V D+ETTG    K DRII+I AV + +   T R F  ++ PN  +  P  + +L
Sbjct: 2   NNQRYVVIDVETTGNSPKKGDRIIQIAAVVIENGQITER-FSKYVNPN--QPIPAFIEQL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI++E ++++  FS+I  + ++  +  ++ +IAHN  FD+ F+  ELQ      ++ S 
Sbjct: 59  TGISNEMVENEEPFSAIAEDIFELLH--DSCFIAHNIHFDLAFVKHELQLAGFGEIECS- 115

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++DT+ ++R   P      L  L +   + I H + H A  D+ + + +++ MM
Sbjct: 116 VLDTVELSRIVFPGFDGYKLTELSEE--LQIRHENPHRADSDAEVTALIFLHMM 167


>gi|170693649|ref|ZP_02884807.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
 gi|170141431|gb|EDT09601.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
          Length = 423

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 13/168 (7%)

Query: 10  IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67
           IVF D+ETTG  +   RI E+G VE+     T  +  V    + ++  P  ++ L GIT+
Sbjct: 54  IVFVDLETTGGSTSEHRITEVGVVEVGPAGVTRWSSLV----DPQQPIPSFIQQLTGITN 109

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  P+F +I  E +   N +   ++AHNA FD GF+  E +R      DP  ++ T+
Sbjct: 110 AMVRGAPTFDAIAPELFARLNGKL--FVAHNASFDRGFLRGEFRRAGIS-FDPD-VLCTV 165

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++R   PS  R+ L++L +R+ +  S R  H AL D+ L+   + ++
Sbjct: 166 RLSRALFPSEKRHGLDALVERHSLVPSDR--HRALADADLIWQFWQRL 211


>gi|330444105|ref|YP_004377091.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58]
 gi|328807215|gb|AEB41388.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58]
          Length = 249

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 78/149 (52%), Gaps = 5/149 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E TGLD K DRIIEI  V    + +   + +  + P  ++ S E+ ++H I++  
Sbjct: 10  VCLDCEMTGLDVKKDRIIEIAIVRF-TFERILDSIEFLINPE-KEVSIESQRIHHISNAM 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LK++P F++++ +   F  + +   + H+  FD+  +  E++R+ +       +IDTL +
Sbjct: 68  LKNQPKFAAVYPKIKAFLKDDD-NIVGHSVGFDLQVLAQEVERLGETFPTKYHVIDTLRL 126

Query: 130 ARRKHPSSRNDLNSLCKRYGITI--SHRS 156
           A+    S  N L SL   + +    +HR+
Sbjct: 127 AKEYGDSPNNSLESLAVHFNVPYDGNHRA 155


>gi|170726548|ref|YP_001760574.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908]
 gi|169811895|gb|ACA86479.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908]
          Length = 205

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 87/183 (47%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PE 58
           M+       IV D ETTGL  ++ DR IEIGAV+L D    + TFQ  + P  R  S  E
Sbjct: 1   MLNPASNSAIVLDFETTGLSPNQGDRAIEIGAVKLEDGVVVD-TFQALMNPGFRITSFIE 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           +    GIT++ L        +   F DF +  N   +AHNA FD  F++AEL  IN+   
Sbjct: 60  SYT--GITNQMLSTAAPCEVVMDRFADFIHGSN--LVAHNASFDQRFLDAELSLINRH-- 113

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK------HGALLDSHLLSDVYI 172
                  ++ IARR +  + N       + G  ++ R        H AL DS + + +++
Sbjct: 114 YTGEFACSMLIARRIYQEAPN------HKLGGLVAFRQIENDGVFHRALADSEMTAKLWL 167

Query: 173 KMM 175
            M+
Sbjct: 168 TMI 170


>gi|182624633|ref|ZP_02952415.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
 gi|177910237|gb|EDT72625.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
          Length = 876

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 14/159 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+E+TG+D   D II+I A++L    +    F+ FL    +K   ++  +HG +DE 
Sbjct: 511 IVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFL--KNKKPVKDSYYVHGFSDEM 568

Query: 70  LK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           L+    DK     +  EF ++   +++  + HN ++D+  + +EL+R N          D
Sbjct: 569 LQRIGEDK---EKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYD 623

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163
           TL I RR +P + N  L +L K Y     H+  H A+ D
Sbjct: 624 TLDIYRRFYPGNINYKLENLSKVYD--TKHKPSHDAMDD 660


>gi|110799207|ref|YP_694883.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
 gi|110673854|gb|ABG82841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
          Length = 870

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 14/159 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+E+TG+D   D II+I A++L    +    F+ FL    +K   ++  +HG +DE 
Sbjct: 505 IVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFL--KNKKPVKDSYYVHGFSDEM 562

Query: 70  LK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           L+    DK     +  EF ++   +++  + HN ++D+  + +EL+R N          D
Sbjct: 563 LQRIGEDK---EKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYD 617

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163
           TL I RR +P + N  L +L K Y     H+  H A+ D
Sbjct: 618 TLDIYRRFYPGNINYKLENLSKVYD--TKHKPSHDAMDD 654


>gi|110801811|ref|YP_697750.1| helicase/exonuclease [Clostridium perfringens SM101]
 gi|110682312|gb|ABG85682.1| helicase/exonuclease [Clostridium perfringens SM101]
          Length = 870

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+E+TG+D   D II+I A++L    +    F+ FL    +K+  ++  +HG +DE 
Sbjct: 505 IVFDVESTGVDVTEDEIIQIAAIKLNKNVEVVDKFEKFL--KNKKSVKDSYYVHGFSDEM 562

Query: 70  LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L+        +  EF ++   +++  + HN ++D+  + +EL+R N          DTL 
Sbjct: 563 LQRIGEEKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYDTLD 620

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163
           I RR +P + N  L +L K Y     H+  H A+ D
Sbjct: 621 IYRRFYPGNINYKLENLSKVYD--TKHKPSHDAMDD 654


>gi|169342971|ref|ZP_02863999.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens C str. JGS1495]
 gi|169298880|gb|EDS80954.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens C str. JGS1495]
          Length = 876

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 14/159 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+E+TG+D   D II+I A++L    +    F+ FL    +K   ++  +HG +DE 
Sbjct: 511 IVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFL--KNKKPVKDSYYVHGFSDEM 568

Query: 70  LK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           L+    DK     +  EF ++   +++  + HN ++D+  + +EL+R N          D
Sbjct: 569 LQRIGEDK---EKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYD 623

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163
           TL I RR +P + N  L +L K Y     H+  H A+ D
Sbjct: 624 TLDIYRRFYPGNINYKLENLSKVYD--TKHKPSHDAMDD 660


>gi|86145733|ref|ZP_01064062.1| DNA polymerase III, alpha subunit [Vibrio sp. MED222]
 gi|218676919|ref|YP_002395738.1| DNA polymerase III, alpha subunit [Vibrio splendidus LGP32]
 gi|85836432|gb|EAQ54561.1| DNA polymerase III, alpha subunit [Vibrio sp. MED222]
 gi|218325187|emb|CAV27099.1| DNA polymerase III, alpha subunit [Vibrio splendidus LGP32]
          Length = 207

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL  +  DR IEIGAV+L++    + TFQ  + P G + S       GI++ 
Sbjct: 10  IVLDFETTGLSPNMGDRAIEIGAVKLVNGEVVD-TFQQLMNP-GFRVSGFIESYTGISNR 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L    S S +  EF +F   Q ++ +AHNA FD  F++AEL  I +D     +   ++ 
Sbjct: 68  MLSTAASCSEVMDEFANFI--QGSQLVAHNASFDKRFLDAELDFIGRDY--TGKFACSML 123

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IARR    +  + L  L +   I  +  + H AL DS + + +++ M+
Sbjct: 124 IARRLIQDAPTHKLGDLVRFKNID-NDGTFHRALADSEMTARLWLLMI 170


>gi|312140182|ref|YP_004007518.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S]
 gi|311889521|emb|CBH48838.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S]
          Length = 577

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 24/171 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHG 64
           +V D+ETTG  S++D I EIGAV++       R  +V      L   GR   P  ++L G
Sbjct: 30  VVVDLETTGGSSESDAITEIGAVKV-------RGGEVLGELGTLVDPGRAIPPYIVELTG 82

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT   ++  P   ++   F +F     A  +AHNA FDVGF+ A   R    P    +++
Sbjct: 83  ITTAMVRTAPRIDTVLPAFLEFAG--GAVLVAHNAGFDVGFLKAAAAR-QGLPWPKFQVL 139

Query: 125 DTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            T+ +ARR     + PS +    +       T +HR    AL D+    DV
Sbjct: 140 CTVKLARRVLGRDEAPSVKLSALAALLGADTTPTHR----ALDDARATVDV 186


>gi|320353730|ref|YP_004195069.1| DNA polymerase III, subunit epsilon [Desulfobulbus propionicus DSM
           2032]
 gi|320122232|gb|ADW17778.1| DNA polymerase III, epsilon subunit [Desulfobulbus propionicus DSM
           2032]
          Length = 218

 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTG   ++ DR IE+GAV + ++ +    FQ  + P G   S    +L GI+++
Sbjct: 7   IVLDFETTGHSPNRGDRPIEVGAVRI-EHDRIVDRFQALMNP-GFTISWFIERLTGISND 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P    + + F D+  +     +AHNA FD  F++AEL  I +   +P  +  T+ 
Sbjct: 65  LIAHAPPCEEVMNRFADWMGD--LPLVAHNAGFDRAFLDAELALIGRHQSNP--MACTVL 120

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +RR  P S N  L +L    GI  +  + H AL D+ +   V+I M
Sbjct: 121 ASRRLFPESPNHKLATLVNHLGI-FTDGTFHRALADAEMTGHVWIAM 166


>gi|227536604|ref|ZP_03966653.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243681|gb|EEI93696.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 469

 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 75/149 (50%), Gaps = 9/149 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69
           + DIETTG  + N  I EI A+ L D  +   ++Q  + P+  K  P  ++ L GIT E 
Sbjct: 15  IVDIETTGGYAANSGITEI-AIYLHDGHQVIDSYQTLINPH--KEIPYHIQMLTGITPEM 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D PSF  + ++ + F   +N  ++AHN  FD  FI A L+        P   + T+ +
Sbjct: 72  LTDAPSFEDVAADIYSFL--ENKVFVAHNVNFDYSFIYAHLKACGYQWKSPK--LCTVRL 127

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSK 157
           AR      S   L +LC+R  I IS R +
Sbjct: 128 ARNIFKGFSSYSLGNLCQRLDIPISDRHR 156


>gi|325676936|ref|ZP_08156608.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707]
 gi|325552236|gb|EGD21926.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707]
          Length = 577

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 25/178 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHG 64
           +V D+ETTG  S++D I EIGAV++       R  +V      L   GR   P  ++L G
Sbjct: 30  VVVDLETTGGSSESDAITEIGAVKV-------RGGEVLGELGTLVDPGRAIPPYIVELTG 82

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT   ++  P   ++   F +F     A  +AHNA FDVGF+ A   R    P    +++
Sbjct: 83  ITTAMVRTAPRIDTVLPAFLEFAG--GAVLVAHNAGFDVGFLKAAAAR-QGLPWPKFQVL 139

Query: 125 DTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            T+ +ARR     + PS +    +       T +HR    AL D+    DV +  ++G
Sbjct: 140 CTVKLARRVLGRDEAPSVKLSALAALLGADTTPTHR----ALDDARATVDV-LHALIG 192


>gi|218134802|ref|ZP_03463606.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990187|gb|EEC56198.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC
           43243]
          Length = 237

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 19/170 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG +   DRIIE+GA + ++  +    F  F+ P     SP    L GITDE 
Sbjct: 6   VAIDLETTGTNPAEDRIIEVGAAK-VECGRVVSIFSTFVNPQ-ISISPRITSLTGITDED 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-----NAELQRINKDPLDPSRII 124
           +   P  + I ++   +   ++   + HN  FD  FI     N++L+   +        I
Sbjct: 64  VAGAPVIADIIADMIAY--TKDVPILGHNVIFDYSFIKKAAANSKLEYAKEG-------I 114

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVY 171
           DTL IARR  P     +L +LC+ + I    SHR+   A+  S L   +Y
Sbjct: 115 DTLKIARRILPDVPHKNLPALCEHFKIDPGKSHRALDDAISASKLYYALY 164


>gi|256825435|ref|YP_003149395.1| hypothetical protein Ksed_16150 [Kytococcus sedentarius DSM 20547]
 gi|256688828|gb|ACV06630.1| exonuclease, DNA polymerase III, epsilon subunit family [Kytococcus
           sedentarius DSM 20547]
          Length = 584

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG  S +  I E GAV++         FQ  + P      P    L GIT   
Sbjct: 28  VVFDLETTGTSSADSEITEFGAVKVRGGEVVGE-FQTLVRPAA-GIPPYIQVLTGITTAM 85

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   PS   +   F +F    +A  +AHNA+FD  F+    +R  + P   + ++DT+ +
Sbjct: 86  VSAAPSIEQVLPNFLEFVG--DAVLVAHNARFDTAFVRRACERTGR-PAPGNPVLDTVHL 142

Query: 130 ARRKHPSSR---NDLNSLCK--RYGITISHRS 156
           AR+  P      + L++L    R   T SHR+
Sbjct: 143 ARQLLPRPEVPNHKLSTLAAYFRAETTPSHRA 174


>gi|266619529|ref|ZP_06112464.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
 gi|288868940|gb|EFD01239.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
          Length = 235

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTGLD K D+IIEIGAV  ++  +    F+ F+ P  R    +   L GI D+ 
Sbjct: 6   VAVDLETTGLDPKRDKIIEIGAVR-IEAGEITAEFESFVNPY-RMLEAKTRTLTGIRDQD 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P    +   F +F  E     + H   FD  F+      +N+        IDTL++
Sbjct: 64  VVHAPGIEEVLPVFLNFAGE--LPLLGHRIIFDYSFLKRAA--VNQGESFSRAGIDTLTL 119

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           AR   P+  R +L + C  +G  I  R  H A+ D+     +Y  M
Sbjct: 120 ARLFMPAEERKNLKAACGWFG--IDQRETHRAMADAVAAHQLYQAM 163


>gi|126437831|ref|YP_001073522.1| DNA polymerase III subunit epsilon [Mycobacterium sp. JLS]
 gi|126237631|gb|ABO01032.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS]
          Length = 330

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 11/162 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RI+ + A+ + D     ++    L P      P    +HG+T E L
Sbjct: 19  VVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATLLNPG---VDPGPTHVHGLTAEML 75

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
           +  P F  I ++  +    +    +AHN  FD  F+ AE + +  + P+D   ++ T+ +
Sbjct: 76  EGAPRFGDIVADLAELLRGRT--LVAHNVGFDYSFLTAEAELVGAELPID--SVMCTVEL 131

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ARR    + N  L +L   +G  +     H AL D+ +L+ +
Sbjct: 132 ARRLDLGTENLRLETLAAHWG--VPQLKPHDALDDAQVLAQI 171


>gi|182417583|ref|ZP_02948906.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237668138|ref|ZP_04528122.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378596|gb|EDT76124.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237656486|gb|EEP54042.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 1450

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFDIETTG    ND+IIEIGAV++ +  +    F  F+ P   ++ P  + +L  I ++
Sbjct: 438 VVFDIETTGFSPVNDKIIEIGAVKIKN-GEVIDNFSHFVNP--ERSIPYVITELTSINND 494

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D  +   +  +F +F    ++  +AHNA FD GFI    + +  D  + S I+DT+ 
Sbjct: 495 MVRDAETIEILLPKFMEFC--ADSVLVAHNAAFDTGFIKKNCRDLGID-FNYS-IMDTVP 550

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +AR   P  +   LN + K  GI++ +   H A+ D+   +++ +K
Sbjct: 551 LARFLCPDLKKVKLNLVAKHLGISLDNH--HRAVDDAKCTAEILLK 594


>gi|168187912|ref|ZP_02622547.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum C str. Eklund]
 gi|169294244|gb|EDS76377.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum C str. Eklund]
          Length = 1441

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 9/164 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG  S+ D+IIE GAV++ + +  + +F  F+ P   K      +L  IT+E 
Sbjct: 429 VVFDLETTGFSSQYDKIIEFGAVKIKNGNIID-SFSAFVNPE-MKIPYRITELTSITNED 486

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD  +   +  +F  F   ++   +AHN+ FD+ FI      +N +      ++DT+ +
Sbjct: 487 VKDAETIDKVLPKFMKF--AEDTVLVAHNSNFDMSFIRKNCNDLNIEC--NYTVMDTIPL 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           A+   P   R  LN++ K  G+++ +   H A+ D+    D+ +
Sbjct: 543 AKFLFPELKRYKLNTIAKHLGVSLENH--HRAVDDAKATGDILV 584


>gi|134093833|ref|YP_001098908.1| putative DNA polymerase/helicase [Herminiimonas arsenicoxydans]
 gi|133737736|emb|CAL60781.1| putative DNA-polymerase/ribonuclease/exonuclease [Herminiimonas
           arsenicoxydans]
          Length = 193

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 92/169 (54%), Gaps = 12/169 (7%)

Query: 9   KIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           K++F D+ETTG +  NDRI EIG V +      +R +  F+ P GR        L GI+D
Sbjct: 6   KLIFIDLETTGANLINDRITEIGIVTVNADGDIDR-WSSFVNP-GRPIPSFIQDLTGISD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126
             +   P+F ++     +    ++  +IAHNA+FD GF++  L R      +D   ++ T
Sbjct: 64  RMVATAPTFETLADTVRERL--EDGLFIAHNARFDYGFLHHALARAGHALSID---VLCT 118

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + ++RR  P   R++L++L  R+G+     ++H AL D+ LL  ++ K+
Sbjct: 119 VKLSRRFFPEEKRHNLDTLIARHGLV--PEARHRALADADLLWQLWEKL 165


>gi|238026493|ref|YP_002910724.1| exonuclease, DNA polymerase III subunit epsilon family/GIY-YIG
           catalytic domain-containing protein [Burkholderia glumae
           BGR1]
 gi|237875687|gb|ACR28020.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia glumae BGR1]
          Length = 381

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 12/164 (7%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEFLK 71
           D+ETTG  +   RI EIG VE+     +  +  +  C    +  P  ++ L GITD  ++
Sbjct: 23  DLETTGGSATEHRITEIGVVEVGPNGVSTWSSLIDPC----QPIPAFIQQLTGITDAMVR 78

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             PSF+SI +    +   +   +IAHNA FD GF+ AE +R      +P  ++ T+ ++R
Sbjct: 79  GAPSFASIAAAL--YARLEGRFFIAHNASFDRGFLRAEFERAGY-AFNPD-VLCTVRLSR 134

Query: 132 RKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              P  SR+ L++L +R+ +  +  ++H AL D+ L+   + ++
Sbjct: 135 ALFPRESRHGLDALIERHALVPN--ARHRALADADLVWQFWRRL 176


>gi|154686487|ref|YP_001421648.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus amyloliquefaciens FZB42]
 gi|154352338|gb|ABS74417.1| DinG [Bacillus amyloliquefaciens FZB42]
          Length = 928

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 9/173 (5%)

Query: 5   NKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN +   P   +L 
Sbjct: 2   NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-QAIPPFIEQLT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+   ++++  F ++  E +   +   A ++AHN  FD+GF+  EL     + L    +
Sbjct: 60  GISSGMVENELPFEAVAEEIFHLLD--GAYFVAHNIHFDLGFVRHELSEAGYE-LPDCEV 116

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DT+ ++R   P      L  LC    + I H   H A  D+ +   V++ ++
Sbjct: 117 LDTVELSRIVFPGFEGYKLGELCAE--LNIVHDRPHRADSDAEVTGLVFLDIL 167


>gi|300933403|ref|ZP_07148659.1| exonuclease, RNase T and DNA polymerase III [Corynebacterium
           resistens DSM 45100]
          Length = 1144

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/145 (35%), Positives = 74/145 (51%), Gaps = 7/145 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+ETTG  SK DR+IEIG V L       RT++  + PN  ++ P +  +H +T 
Sbjct: 6   RYAVIDLETTGF-SKTDRVIEIGVVLLDQAGNVERTWETIVQPN--RDIPNSF-VHKLTP 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126
             L   P F  I  E  +  + +    IAHNA FD+ F+ +E +RI    P   + + DT
Sbjct: 62  SHLVHAPLFEEIAEELAEILHGRTI--IAHNAPFDIRFLTSEFERIGVALPAYGAWVHDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGIT 151
           L + R+  P +   L  + K  GIT
Sbjct: 120 LPLCRQCFPGTNGSLEKVTKLLGIT 144


>gi|90414417|ref|ZP_01222394.1| putative DNA polymerase III [Photobacterium profundum 3TCK]
 gi|90324530|gb|EAS41086.1| putative DNA polymerase III [Photobacterium profundum 3TCK]
          Length = 214

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 15/171 (8%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL  ++ DR IEIGAV L++  K    FQ  + P G + S       GIT+ 
Sbjct: 16  IVLDFETTGLSPTQGDRAIEIGAV-LMENGKVVDRFQKLMNP-GFRVSSFIEGYTGITNN 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+     + +  +F DF  + N   +AHNA FD  F++AEL  I +          ++ 
Sbjct: 74  MLRTAAPCNEVMDQFTDFIGDYN--LVAHNASFDKRFLDAELDIIKRSY--GGEFACSML 129

Query: 129 IARRKHPSSRND-LNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKMM 175
           IARR + ++ N  L SL     I    + HR    AL DS + + ++++M+
Sbjct: 130 IARRLYQNAPNHKLGSLVAYKNIDHDGVFHR----ALADSEMTAKLWLQML 176


>gi|312869960|ref|ZP_07730099.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris
           PB013-T2-3]
 gi|311094545|gb|EFQ52850.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris
           PB013-T2-3]
          Length = 949

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 27/191 (14%)

Query: 1   MIRKNKMRK----------IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           M +KNK R            V D+ETTG   +  DRII+IG V + D    N  F+  + 
Sbjct: 1   MQKKNKRRTPKRDRTAPIYSVVDLETTGTSVNHGDRIIQIGCVLVQDGQVINH-FETKVN 59

Query: 50  PNGRKNSPEAL-KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           P  R+  P A+ +L GI D  ++  P F  +    +         ++AHN  FD  F+NA
Sbjct: 60  P--REKIPRAVVQLTGIQDRDVRKAPLFEDVAGTIYSLLT--GTTFVAHNVNFDFPFLNA 115

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDS 164
           EL+R    PL P + IDT+++++   P++++    DL S      + I H   H A+ D+
Sbjct: 116 ELERAGYPPL-PIKAIDTVTLSQILLPTAKSFRLRDLTS-----SLQIEHDHPHSAVSDA 169

Query: 165 HLLSDVYIKMM 175
              + + + ++
Sbjct: 170 EATASLLVDLL 180


>gi|300173484|ref|YP_003772650.1| DNA polymerase III subunit alpha [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887863|emb|CBL91831.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 1437

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL +  D+IIE+ AV+ +        F  ++ P G   S    KL  ITD  
Sbjct: 420 VAFDLETTGLSAVTDKIIELSAVK-MQLGNVIEKFSEYINP-GFPLSDFTTKLTSITDTM 477

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    +  +I   F  +  E  A  I HN  FD+GF+NA   R +++ +  + +IDTL  
Sbjct: 478 VAHTDTEENIIKRFRQWVGE--AVLIGHNVTFDIGFMNAAYARYSQESI-TNPVIDTLPF 534

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
            R  +P  ++  L ++ KR+ I +     H A+ D+
Sbjct: 535 TRWLYPDYKSYRLGTIAKRFNINLEQ--AHRAIFDA 568


>gi|227485452|ref|ZP_03915768.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227236582|gb|EEI86597.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 295

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+ D+ETTGLD  NDRIIEIGA+++    K N+ +   +  +  K S +   + GI+DE 
Sbjct: 130 IIIDLETTGLDPINDRIIEIGAIKI---GKENKEYSSIIWQD-IKLSEKISNITGISDED 185

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K      +  +EF DF  E     + +N  FD+ FIN  L+R  K P   +   D +  
Sbjct: 186 IKKGKDEKNAINEFIDFIGEDTL--VGYNINFDIKFINESLKRQEK-PKIKNMTYDVMQY 242

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +      +N  L ++ K YG  I+    H AL D  ++  +  K+
Sbjct: 243 VKNDKLFLKNYKLETVIKEYG--INKNVPHRALEDVKIIQKLIAKL 286


>gi|82523686|emb|CAI78468.1| Rad3-related DNA helicases [uncultured candidate division WS3
           bacterium]
          Length = 965

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 8/183 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ETTG+DS+ DRIIE+GAV ++D  +   TF+ F+ P G     + + L GI+D  + 
Sbjct: 31  LDLETTGVDSRVDRIIEVGAVRVVD-GRVADTFESFVNP-GCPIPSDIVHLTGISDADVA 88

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P+   +     +F     +  +AH+A FD GF++          +    + DTL + R
Sbjct: 89  GAPTIDEVLPRIIEFIG--GSPIVAHHAPFDTGFLDEAAGGRPGLLVGRGGVFDTLPLTR 146

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191
              P   N   +   R+    + RS H A  D+  +SD+++ ++    QI     T  DR
Sbjct: 147 ALLPRLPNHRLATAARFFDIPTGRS-HRATDDARAVSDLFLALLGVLDQIG---ATVLDR 202

Query: 192 FFK 194
            ++
Sbjct: 203 MYR 205


>gi|303231325|ref|ZP_07318060.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514005|gb|EFL56012.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
          Length = 861

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 6/155 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+E+TG D+  DRI++I A+ +         F+ F+ P   K+   +  +HG TD +
Sbjct: 495 VVYDVESTGTDTTEDRIVQIAAMRIDKDGNEIERFERFINPG--KSVGTSQLVHGFTDAY 552

Query: 70  LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L +   S   +   F +F N  N   + HN  +D+  ++ EL R N        + DTL 
Sbjct: 553 LAEHGESPKVVLEAFKEFSN--NRIIVGHNVNYDISILSHELARHNLGEPQFKAVYDTLD 610

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           I RR +P+  N       +Y   I+H   H A+ D
Sbjct: 611 IFRRFYPTLENHKLGFLSKY-FPINHTPTHNAMDD 644


>gi|237733311|ref|ZP_04563792.1| 3'-5' exonuclease [Mollicutes bacterium D7]
 gi|229383692|gb|EEO33783.1| 3'-5' exonuclease [Coprobacillus sp. D7]
          Length = 443

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 24/171 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEA------LKLHGI 65
           D+ET   + +N+ I  IG + +  D   T + F V          PEA      ++L GI
Sbjct: 9   DVETP--NYQNNSISSIGVINVDGDGVVTTKYFLV---------DPEAHFDRFNIELTGI 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E + D+P+F  ++SE   +F   N+  +AHNA FD+G I+A LQR +  P+ P     
Sbjct: 58  TPEMVADQPNFKEVWSEIEPYFT--NSLVVAHNAVFDLGVISACLQRYDL-PIFPIFYTC 114

Query: 126 TLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T  I+R  K PS+   LN L   Y +T+ +   H AL DS    +++  ++
Sbjct: 115 TYRISRALKIPSNSYKLNDLSSYYHVTLDNH--HNALADSKACMEIFYYLL 163


>gi|323701749|ref|ZP_08113420.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533285|gb|EGB23153.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 930

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 14/168 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           +  D+ETTGLD  +D IIEIG V+++D  +    FQ  + P G    P  +K L G+ D+
Sbjct: 6   VALDLETTGLDCWSDDIIEIGMVKVID-GQERDFFQSLVRPGG--PLPVKIKQLTGLKDD 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +  P F +I  +   F    +   + HN KFD  F+ A           P+ + DTL 
Sbjct: 63  DFQSAPWFQTIIPKILTFIG--DLPLVGHNIKFDRDFLAAACGHQL-----PNDLYDTLE 115

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   PS+ +  L  LCK  G+ ++   +H AL D+   + + +K++
Sbjct: 116 LARILQPSAPSHRLGELCKIAGVEVN--VEHRALDDARSSARLMLKLL 161


>gi|307545330|ref|YP_003897809.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
 gi|307217354|emb|CBV42624.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581]
          Length = 682

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 10/158 (6%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + FD ETTGL  +  DR+I +GA  +++     + TF+  + P  R     +  +HG+ D
Sbjct: 491 VAFDTETTGLALREGDRLISLGACRIVNGRLLADETFEQHVNPQ-RPIPSASTAIHGLGD 549

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +++ P+   +   F D+    +A  +AHNA FD+  I         D  D   ++DTL
Sbjct: 550 QDVENAPTAEQVLPRFRDYVG--SAVLLAHNAAFDMLAIRPG---PGTDAFD-MPVLDTL 603

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
            ++R   P    +DL+SL KRYG+     ++H AL D+
Sbjct: 604 LLSRALDPGLEGHDLDSLAKRYGLRFPPGTRHTALGDA 641


>gi|217076887|ref|YP_002334603.1| DNA polymerase III PolC-type [Thermosipho africanus TCF52B]
 gi|217036740|gb|ACJ75262.1| DNA polymerase III PolC-type [Thermosipho africanus TCF52B]
          Length = 186

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 95/185 (51%), Gaps = 11/185 (5%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITDE 68
           V D ETTGL+    DRIIEI  V +       +  +   + PN R  +    K+HGI+++
Sbjct: 9   VMDTETTGLNPYFGDRIIEIAIVPVYKNKIVKKWIYHSLVNPNIRIPALTE-KIHGISND 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D PS  +I S    +   +   ++ HNA  D+ FI+   + I + P++  R IDTL 
Sbjct: 68  AITDAPSLENIISNVRAY--AKGTIFVMHNAYVDLSFIDIATKEIGEFPIN-FRYIDTLE 124

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFGFK 186
           I++  +   R+ L SL K +   I+ +  H AL D+ L + V++K+   +G + IN   +
Sbjct: 125 ISQVLYNKKRS-LESLVKEF--KIADKVPHRALEDAILTAKVFLKLYEKIGYNNINEFIR 181

Query: 187 TNEDR 191
              DR
Sbjct: 182 IWGDR 186


>gi|261363839|ref|ZP_05976722.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           mucosa ATCC 25996]
 gi|288568430|gb|EFC89990.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           mucosa ATCC 25996]
          Length = 479

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 12/162 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           +V D+ETTG +   DR+ E+  +     S     + V  C    K  PE   +L GI+++
Sbjct: 34  VVVDLETTGGNLYQDRVTEVALLRFDGQSVCRYEWLVNPC----KPIPEFVAQLTGISNK 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K  P F  I S+       Q A  +AHN++FD  F+  E +R   D   P+  + T+ 
Sbjct: 90  MVKTAPLFEEIASQLLPLL--QGAVVVAHNSRFDYTFLRHEFRRAGIDFAAPA--LCTVQ 145

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++RR +P   +++L+S+ +R  I + +R  H A+ D   LSD
Sbjct: 146 LSRRLYPEFYKHNLDSIIERNAIAVENR--HRAMTDVLALSD 185


>gi|147677749|ref|YP_001211964.1| hypothetical protein PTH_1414 [Pelotomaculum thermopropionicum SI]
 gi|146273846|dbj|BAF59595.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 937

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 10/149 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGLD  +DRIIEIG V L D  K    +   + P GR    +   L G+ D  
Sbjct: 6   VVCDLETTGLDPLSDRIIEIGLVRLKDL-KIVDIYHTMVNP-GRPLPLKIKNLTGLDDSD 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P+FS +  +   F    +A    HN +FD+GF+ A      K+P       DT+ +
Sbjct: 64  LASAPAFSGVREKVLGFIG--DAPIAGHNIRFDMGFLAAAGGISFKNP-----AYDTVEL 116

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSK 157
           AR   P      L SLC+R  +  + R +
Sbjct: 117 ARLAVPGLPTYRLESLCERLNVEAAARHR 145


>gi|222099149|ref|YP_002533717.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM
           4359]
 gi|281411717|ref|YP_003345796.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila
           RKU-10]
 gi|221571539|gb|ACM22351.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM
           4359]
 gi|281372820|gb|ADA66382.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila
           RKU-10]
          Length = 186

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 11/168 (6%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL-KLHGITD 67
           V D ETTG D    DRIIEI AV +      +NR F   + P+ R   P  + K+HGI++
Sbjct: 10  VVDTETTGTDPFGGDRIIEIAAVPVFKGKIFSNRAFHSLVNPHVR--IPALIQKVHGISN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++ P   +++  F D+   +    + HNA FD+ F++   +     PL  +  IDTL
Sbjct: 68  EEVEEAPDMGTVYERFRDYV--KGTVLVFHNANFDLTFLDMMAKETRNFPL-TNAYIDTL 124

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            I++       + L  LC++ G  I  + +H AL D+ + + V+++++
Sbjct: 125 DISQEVF-GRPHSLKWLCEKLG--IRDKIEHRALSDALVTAKVFVRLV 169


>gi|78186872|ref|YP_374915.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273]
 gi|78166774|gb|ABB23872.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273]
          Length = 236

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 16/173 (9%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R +VFD ETTG D K D +I IGAV +   S     +F+V L    R    EA+ +HG+
Sbjct: 47  VRMVVFDTETTGFDLKTDGVISIGAVAINGLSINVADSFEV-LVRQDRVGRSEAVAVHGL 105

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             + +            F ++    ++  +A +A FDV  +N  L    +  L    ++D
Sbjct: 106 LKKDIAGGAGEVEAAEAFLEYIG--SSILVAQHASFDVAMLNRILSETFRIRLFNG-VVD 162

Query: 126 TLSIARR---------KHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           T S+A+R          H +    L+ LC+RYGI +   H +   A L + LL
Sbjct: 163 TASLAKRLEKGPYYNLAHKAGEYRLDHLCQRYGIRLYDRHTAAGDAFLTAQLL 215


>gi|91775906|ref|YP_545662.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
 gi|91709893|gb|ABE49821.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
          Length = 462

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 84/161 (52%), Gaps = 9/161 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+ETTG     DRI EIG +   +  +  R +Q  + P     SP    + GI++  
Sbjct: 6   VLLDLETTGATPVTDRITEIGLIRYENGIEVKR-WQTLVNPE-MHISPFITSITGISNAM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P F  + +E     +   A   AHN +FD GF+  E +R+  D      ++ T+ +
Sbjct: 64  VKDAPLFKDVANELLSHLH--GAVLCAHNVRFDYGFLKNEFRRL--DITLRQNVLCTVKL 119

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           +RR +P  + + L+++  R+GI  +  ++H A+ D  ++++
Sbjct: 120 SRRLYPEYKSHGLDAIIARHGIACA--ARHRAMGDVEVMAE 158


>gi|269836971|ref|YP_003319199.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM
           20745]
 gi|269786234|gb|ACZ38377.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM
           20745]
          Length = 658

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 8/150 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V DIETTGL     RIIE+ A+    Y    R        N  +  P  + KL GI + 
Sbjct: 89  VVIDIETTGLRPLRQRIIEVAAIR---YRGGRRQGVFSTLVNPERPVPAYIRKLTGIDET 145

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  +  E   F  +     I +N +FD+ F+NAEL+R+ + PL   R +D L 
Sbjct: 146 ALAGAPVFRRVADELTAFLGDDL--LIGYNVEFDIAFLNAELKRLGRPPLINPR-LDLLP 202

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSK 157
           ++ +  P   R+ L++ C   G+    R +
Sbjct: 203 LSTQLIPGMRRSGLDAACLALGLEFRERHR 232


>gi|159039058|ref|YP_001538311.1| hypothetical protein Sare_3518 [Salinispora arenicola CNS-205]
 gi|157917893|gb|ABV99320.1| DNA polymerase III, epsilon subunit [Salinispora arenicola CNS-205]
          Length = 585

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 96/224 (42%), Gaps = 28/224 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG       I EIGAV++    +        + P G    P    L GIT   
Sbjct: 33  VVVDLETTGGAPDGGGITEIGAVKVRGGEQLG-VLATLVNP-GVPVPPFVTVLTGITQAM 90

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   PS + +   F +F +  +A  +AHNA +DVGF+ A          +P RI+DT ++
Sbjct: 91  LLPAPSIAQVLPSFLEFLS-ADAVLVAHNAPYDVGFLKAACAAHGHRWPNP-RILDTAAL 148

Query: 130 ARRKHPSSRNDLNSLCKRYGITISH-----RSKHGALLDSHLLSDV---YIKMMVG---- 177
           ARR    SR+++ +  +R G   ++     +  H AL D+    DV    I  + G    
Sbjct: 149 ARRVL--SRDEVPN--RRLGTLAAYFRTSTQPTHRALDDAKATVDVLHGLIARLGGHRVH 204

Query: 178 --GSQINFGFKTNED----RFFKEEKKTVPNISLLKR--DKPLF 213
             G  I F           R   E     P + L +   D+PL+
Sbjct: 205 TIGEAIEFARAVTPTQRRKRHLAEGLPRTPGVYLFRGADDRPLY 248


>gi|154509184|ref|ZP_02044826.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798818|gb|EDN81238.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC
           17982]
          Length = 550

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL +  D I EIGAV + D +  +  F   + P+ R   P    L GIT   
Sbjct: 30  VVVDLETTGLGAGAD-ITEIGAVRIRDGAVVDE-FSSLVKPS-RPIPPFITSLTGITPAM 86

Query: 70  LKDKPSFSSIFSEF--WDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           + D    +S+   F  W      ++   +AHNA FDVGF+     R    P    RI+DT
Sbjct: 87  VADAAPIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRA-ARACARPWPRVRIVDT 145

Query: 127 LSIARRKHPSS--RN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L++AR   P    RN  L ++   +G       +H AL D+   +++ +  +
Sbjct: 146 LALARLALPRPLVRNHKLGTVASYFGTATV--PEHRALGDARATAEILLGFI 195


>gi|294660232|ref|NP_852876.2| DNA polymerase III subunit alpha polC/Gram positive-type
           [Mycoplasma gallisepticum str. R(low)]
 gi|284811887|gb|AAP56444.2| DNA polymerase III alpha subunit polC/Gram positive-type
           [Mycoplasma gallisepticum str. R(low)]
 gi|284930337|gb|ADC30276.1| DNA polymerase III alpha subunit polC/Gram positive-type
           [Mycoplasma gallisepticum str. R(high)]
          Length = 1494

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 11/183 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVF-------LCPNGR 53
           ++ +++  ++FDIETTGL++  ++IIEI AV +  + + TN   +         L  N +
Sbjct: 403 LKLDQLSFVIFDIETTGLNAYYEQIIEIAAVRVKAELNVTNHQLEFVQIGKFEKLIKNKK 462

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQR 112
             S    +L G+ D  LKD     ++  EF +F  + +   +AHN   FD  +IN +L +
Sbjct: 463 PLSKFTTQLTGLKDSDLKDAQDEKTVLEEFVNFIQKDDV-LVAHNGIDFDFIWINTKLDK 521

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               PLD + ++D+L +A + +   R  L +L  + G        H A  D+ LL+   +
Sbjct: 522 YKLKPLD-NPMLDSLRLAYQLYQFKRYTLENLSLKLGYEYDKTLAHRANYDTELLAKCLM 580

Query: 173 KMM 175
            M+
Sbjct: 581 IML 583


>gi|307326641|ref|ZP_07605834.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306887625|gb|EFN18618.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 638

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 9/174 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ET+GL ++ DR++ +  + +    +    F   L P      P  +K+HG+T E L
Sbjct: 22  LVDVETSGLMARRDRVLSVAVITVGPDGEQTGEFSTLLNPG---CDPGPVKVHGLTVERL 78

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P+F  +          Q+   +AHNA+FD  F+  E  R  +  L  S+ + TL++ 
Sbjct: 79  QGAPTFDQVAGRIGAML--QDRVLVAHNAQFDYDFLAHEFAR-ARTWLPVSQRLCTLALN 135

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           R+  P + +  L +L   YG  I  +  H AL D+ +L+ +    +   +Q++ 
Sbjct: 136 RQVDPPTGDMKLGTLAAHYG--IPQQRAHDALDDTRVLAGILRASLREAAQLDL 187


>gi|74316845|ref|YP_314585.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC
           25259]
 gi|74056340|gb|AAZ96780.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
           ATCC 25259]
          Length = 470

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 89/162 (54%), Gaps = 11/162 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGIT 66
           R    D+ETTG ++  DR+ EIG V          T+   + P   +  P+ ++ L GI+
Sbjct: 9   RLAFVDLETTGANAARDRVTEIGVVV--VDGDRVETWSTLVNPE--RAIPQFIQQLTGIS 64

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E + D P+F+ +  E  +  + +   +IAHNA+FD GF+  E QR+ +     + ++ T
Sbjct: 65  NEMVADAPTFARVADELAERLDGRL--FIAHNARFDYGFLKHEYQRLGRR--FRADVLCT 120

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           + ++RR  P   R++L+SL  R+G+  +   +H AL D+ L+
Sbjct: 121 VRLSRRLFPEHYRHNLDSLIARHGLA-TEGDRHRALADADLI 161


>gi|322417781|ref|YP_004197004.1| putative PAS/PAC sensor protein [Geobacter sp. M18]
 gi|320124168|gb|ADW11728.1| putative PAS/PAC sensor protein [Geobacter sp. M18]
          Length = 835

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 9/172 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHG 64
           +  +VFD ETTGL  S+ D+++ I AV +      N   F   + P GR    E+   H 
Sbjct: 639 LEYVVFDTETTGLQISQGDKVVSISAVRIRRGKVQNADIFHTLVNP-GRHIPAESTAFHR 697

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I D  + D PS + ++ +F  +  +  A  +AHNA FD   ++         PL  + I+
Sbjct: 698 IEDHMVADAPSMNEVYPQFVKYAGD--AVLVAHNAAFDKKCLDMAAAEAGL-PLVENPIL 754

Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DTL ++   H  +  + L+++ +R GI I  R  H +L D+   + +++ ++
Sbjct: 755 DTLFLSVGLHSGTEGHSLDAMAQRMGIAIEGR--HTSLGDARATAQIFLGLL 804


>gi|257066105|ref|YP_003152361.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
 gi|256797985|gb|ACV28640.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
          Length = 1365

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 11/167 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDE 68
           +VFD+ETTGL    DRI EIGA   ++  K    +   + P      PE  +++ GIT+E
Sbjct: 350 VVFDLETTGLSRYKDRITEIGACR-VEGGKITEIYNELVNP--EMVIPEKIIEITGITNE 406

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P+   +   F DF   +++  +  N  FDVGF+     R+  D  +P   +DTL 
Sbjct: 407 MVKDCPTIEEVLPGFLDFC--KDSILVGQNTDFDVGFVRENCHRMGLD-FNPI-YLDTLP 462

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +AR      +   L+ + ++  + I   + H A  D+   + ++IKM
Sbjct: 463 MARALFSDMKKFSLDKIARK--LEIPAFNHHRASDDARATAQIFIKM 507


>gi|84496154|ref|ZP_00995008.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649]
 gi|84382922|gb|EAP98803.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649]
          Length = 572

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 14/158 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           +V D+ETTG       I EIGAV++    +    FQ F+ P   +  P  +  L GITD 
Sbjct: 21  VVVDLETTGGSPSECGITEIGAVKV-RAGEVLGEFQTFVNPG--QPIPAFISVLTGITDA 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127
            ++D P        F +F     +  +AHNA FDV F+ A   R  +D P  P  ++DT+
Sbjct: 78  MVRDAPRVEPALVAFLEF--AAGSVLVAHNAGFDVSFLKAACGRAERDWPSFP--VVDTV 133

Query: 128 SIARR---KHPSSRNDLNSLCKRYGITIS--HRSKHGA 160
            +AR+   +  +  + L SL   +G T +  HR+ H A
Sbjct: 134 HLARQLVTRDEAPNHRLGSLAVLFGATTTPDHRALHDA 171


>gi|323351851|ref|ZP_08087502.1| DNA polymerase III [Streptococcus sanguinis VMC66]
 gi|322121908|gb|EFX93640.1| DNA polymerase III [Streptococcus sanguinis VMC66]
          Length = 814

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S N +II+IG V L++     +T++  + P+   +  E +K
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-NAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56

Query: 62  -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P
Sbjct: 57  ELTGLNDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +LC    + IS  + H AL D+   + +++K+
Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165


>gi|321272268|gb|ADW80153.1| DNA polymerase III [Wolbachia endosymbiont wVitA of Nasonia
           vitripennis phage WOVitA1]
 gi|321272325|gb|ADW80207.1| putative DNA polymerase III [Wolbachia endosymbiont wVitB of
           Nasonia vitripennis phage WOVitB]
          Length = 74

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 47/66 (71%)

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           EL ++N   +  +R++DTL +AR+K P S   LN LCKR+ I+++ R+ HGAL+D+ LL+
Sbjct: 2   ELGKLNAKLISSNRVLDTLPLARKKFPKSPASLNELCKRFDISLNDRTSHGALIDAQLLA 61

Query: 169 DVYIKM 174
            VY ++
Sbjct: 62  KVYAQL 67


>gi|108801863|ref|YP_642060.1| DNA polymerase III subunit epsilon [Mycobacterium sp. MCS]
 gi|119871016|ref|YP_940968.1| DNA polymerase III subunit epsilon [Mycobacterium sp. KMS]
 gi|108772282|gb|ABG11004.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
 gi|119697105|gb|ABL94178.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
          Length = 330

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 11/162 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RI+ + A+ + D     ++    L P      P    +HG+T E L
Sbjct: 19  VVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATLLNPG---VDPGPTHVHGLTAEML 75

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
           +  P F  + ++  +    +    +AHN  FD  F+ AE + +  + P+D   ++ T+ +
Sbjct: 76  EGAPRFGDVVADLAELLRGRT--LVAHNVGFDYSFLTAEAELVGAELPID--SVMCTVEL 131

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ARR    + N  L +L   +G  +     H AL D+ +L+ +
Sbjct: 132 ARRLDLGTENLRLETLAAHWG--VPQLKPHDALDDAQVLAQI 171


>gi|297203185|ref|ZP_06920582.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
 gi|197717364|gb|EDY61398.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
          Length = 240

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 23/160 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68
           I FD+ETTG D +  RI+    +EL D     R  + +L   G +   +A+ +HGI++E 
Sbjct: 9   IGFDLETTGTDPREARIVTAAVIELRDGQSLGR--REWLADPGMEIPADAVAVHGISNER 66

Query: 69  -FLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---- 117
              + +P      + + + + +W    +     +A+NA FD+  ++AEL+R         
Sbjct: 67  AAAEGRPADQVADAIADVLTTYW----KTGVPVVAYNAAFDLSLLSAELRRYGLPSLRER 122

Query: 118 ---LDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
              LDP+ +ID  +I R   ++   + +L ++C  YG+ +
Sbjct: 123 LGGLDPAPVIDPYTIDRSVDRYRRGKRNLEAVCTEYGVAL 162


>gi|149188690|ref|ZP_01866982.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Vibrio
           shilonii AK1]
 gi|148837600|gb|EDL54545.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Vibrio
           shilonii AK1]
          Length = 207

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 15/180 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M+  +    +V D ETTGL  ++ DR IEIGAV+L + +  +R FQ  + P G + S   
Sbjct: 1   MMLSSAKSVVVLDFETTGLSPNQGDRAIEIGAVKLENGTVVDR-FQSLMNP-GFRVSGFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GI++  L + PS   +  EF  F   +N+  +AHNA FD  F++AEL+ IN+    
Sbjct: 59  ENYTGISNAMLANAPSCKDVMGEFSTFI--KNSNLVAHNASFDKRFLDAELELINESY-- 114

Query: 120 PSRIIDTLSIARR-KHPSSRNDLNSLCKRYGIT---ISHRSKHGALLDSHLLSDVYIKMM 175
                 +L ++RR    +  + L  L   + I    + HR    AL D+ + + +++ ++
Sbjct: 115 TGEFACSLLVSRRLNQEAHSHKLGDLVAYHNIANDGVFHR----ALADAEVTASLWLLLV 170


>gi|266619696|ref|ZP_06112631.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
 gi|288868749|gb|EFD01048.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
          Length = 264

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG+ +  D IIEI A+++ ++ +   TF   + P  R     A K++GITDE 
Sbjct: 59  VVFDLETTGISAVKDDIIEISALKVKNHEQV-ETFSRLVNPR-RPIPAGATKVNGITDEM 116

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLS 128
           ++ +P    I  EF DF + +    I HN + FD+ F+N     + +  +  +  IDTL 
Sbjct: 117 VQSEPGLEFILPEFLDFIDGE--ILIGHNIQSFDLLFLNRAADEVCRKAV-LNDFIDTLF 173

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +AR   P  SR+ L  L   +   IS    H A  D  +    Y  M
Sbjct: 174 MARALLPGLSRHRLTDLADYF--KISSEGAHRAFNDCVMNQICYEHM 218


>gi|294629410|ref|ZP_06707970.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
 gi|292832743|gb|EFF91092.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
          Length = 653

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ET+GL ++ DRI+ I  +           +   + P      P  + +HG+T E L
Sbjct: 21  LVDVETSGLIARRDRILSIAVLTFGPDGTQTGEYSTLVNPG---CDPGPVHIHGLTAERL 77

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D P+F  +          Q+   +AHNA+FD  F+  E  R     L  ++ + TL++ 
Sbjct: 78  RDAPAFEQVAGRIGALL--QDRVMVAHNAQFDYDFLAHEFARARLC-LPVNQRLCTLALN 134

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           RR  P + +  L SL   YG+  +    H AL D+ +L+ ++
Sbjct: 135 RRVEPPAADLSLASLAAHYGVPQTR--AHDALDDTRVLAGIF 174


>gi|153833352|ref|ZP_01986019.1| DNA polymerase III, alpha subunit [Vibrio harveyi HY01]
 gi|148870361|gb|EDL69287.1| DNA polymerase III, alpha subunit [Vibrio harveyi HY01]
          Length = 204

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 87/170 (51%), Gaps = 13/170 (7%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV+++D  +   +FQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPNMGDRAIEIGAVKIVD-GEVVDSFQQLMNP-GFRVSSFIEGYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  PS   + + F +F   +N   IAHNA FD  F++ EL+RI  D         +L 
Sbjct: 66  MLRTAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDTELERI--DCGYSGEFACSLL 121

Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +ARR     PS +  L  L  RY    +    H AL D+ + + +++ M+
Sbjct: 122 VARRLIQDAPSHK--LGELV-RYKNIENDGVFHRALADAQVTAKLWLLMV 168


>gi|289423581|ref|ZP_06425382.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
 gi|289156083|gb|EFD04747.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
          Length = 174

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 23/174 (13%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           IV D+ETTGLD  +   IIEIG  E+      L+YS+        + P G  +S     L
Sbjct: 11  IVVDLETTGLDPLQGHEIIEIGVTEIKKGDITLNYSR-------LIKPKGIISS-FITNL 62

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             I++E ++ + +   +  +F ++    ++  IAHNAKFD+ F+N  L+++  +P+    
Sbjct: 63  THISNEMVEGEKTLEEVLPKFREYIG--DSVLIAHNAKFDIPFLNYYLEKMGLEPI--KN 118

Query: 123 IIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            I TL + +  + +P  +  L++ C  YG  I +   H A  D+H  + +++K+
Sbjct: 119 YICTLEMLKMNKMYPLKKKSLSAACDFYG--IKNVEAHRAYADTHATALLFLKI 170


>gi|269965971|ref|ZP_06180063.1| ribonuclease T [Vibrio alginolyticus 40B]
 gi|269829367|gb|EEZ83609.1| ribonuclease T [Vibrio alginolyticus 40B]
          Length = 214

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D         T    + P  G     EAL+ +G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLKMDEHGVLHPASTIHFHVEPFEGANLEKEALEFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD+GF+NA  +R  +
Sbjct: 80  IRDPFSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLGFVNAANERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++   +   +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCG 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|326333554|ref|ZP_08199794.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae
           bacterium Broad-1]
 gi|325948663|gb|EGD40763.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae
           bacterium Broad-1]
          Length = 580

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 101/233 (43%), Gaps = 34/233 (14%)

Query: 10  IVFDIETTGLDSKNDRII-EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            V D+ETTG    N  +I EIGAV++    +    FQ  + P+     P    L GIT+ 
Sbjct: 45  CVVDLETTGNSPDNGGMITEIGAVKVRG-GEVLGEFQTLVNPHT-GIPPSIAVLTGITNS 102

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+  S+   F +F   +    +AHNA FDVGF+        + P     ++DT+ 
Sbjct: 103 MVASSPTIESVLPAFLEF--AEGCVLVAHNAPFDVGFLK-HFAAKQERPWPRFEVLDTVK 159

Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           IARR   +  +  + L SL + +G   +    H AL D+    DV   MM  +G    N 
Sbjct: 160 IARRVITRDEAPNHKLGSLARVFGSPTT--PNHRALQDARATVDVLHGMMERLG----NL 213

Query: 184 GFKTNED---------------RFFKEEKKTVPNISLLK--RDKPLFTRITKE 219
           G  T ED               R   E+    P + L K  +D+ L+   +K+
Sbjct: 214 GVLTLEDLAAFSAKVTTAQRKKRHLAEDLPHAPGVYLFKDSQDRVLYIGTSKD 266


>gi|226310490|ref|YP_002770384.1| hypothetical protein BBR47_09030 [Brevibacillus brevis NBRC 100599]
 gi|226093438|dbj|BAH41880.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 235

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 9/185 (4%)

Query: 2   IRKNKMRKIVFDIETTGL-DSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           I  + +  +V D+ETTG      D II +GAV +  ++     +F   + P GR   P  
Sbjct: 46  IPLHDLEVVVVDLETTGFYPDHGDAIISMGAVAMRGEHLLLGDSFYTLVNP-GRAIPPHI 104

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             L GITD+ + D P      S F+ +  ++    +AH+++ +  F+ + L + ++ P  
Sbjct: 105 RSLTGITDDMVADAPPLLEALSRFFQYVGDR--PLVAHHSRHEREFLRSGLWKTSRRPFT 162

Query: 120 PSRIIDTLSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             R++DT+ + R   +P     L++LC  + I IS R  H A  D+     ++ K +V  
Sbjct: 163 -HRMLDTMLLIRLLNNPIGNGSLDALCAAHDIPISRR--HHAYCDALAAGTLWAKYLVKA 219

Query: 179 SQINF 183
               F
Sbjct: 220 QSQGF 224


>gi|295395939|ref|ZP_06806124.1| nuclease subunit of the excinuclease complex [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971212|gb|EFG47102.1| nuclease subunit of the excinuclease complex [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 560

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG +S    I EIGAV+          FQ  + P     SP   +L GIT+  +
Sbjct: 17  VVDLETTGANSAQGDITEIGAVKSRGGEIIGE-FQTLVRPTRSVISPFVERLTGITNSMV 75

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P  +S+   F +F     +  +AHNA FDVGF+     R++  P     ++DT+ +A
Sbjct: 76  ATAPELASVIPMFLEF--AHGSILVAHNAGFDVGFLKEACARLDY-PWPGYEVVDTVRLA 132

Query: 131 R---RKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVY 171
           R    +     + L +L   + +    +HR+   A    H+L  ++
Sbjct: 133 RLCVTRQEVRNHKLGTLATFFNVPTPPTHRALDDARATHHILQSMF 178


>gi|312195665|ref|YP_004015726.1| DNA polymerase III epsilon subunit [Frankia sp. EuI1c]
 gi|311227001|gb|ADP79856.1| DNA polymerase III, epsilon subunit [Frankia sp. EuI1c]
          Length = 615

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 79/186 (42%), Gaps = 16/186 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG       I E GAV++           +     G    P    L GITD  
Sbjct: 53  VVFDLETTGTGPTTAEITEFGAVKVRGGEVVAEFATLVRASTG--IPPLITVLTGITDAM 110

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P  + +   F +F   Q    +AHNA FD+ F+ A  +R+   P+     +DT  +
Sbjct: 111 LATAPPLAEVLPAFLEFI--QGTVLVAHNAGFDLSFLKAACERVGY-PVPTWEHLDTARL 167

Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFG 184
           ARR   +  S  N L+SL + +         H AL D+    DV   +   +G    N G
Sbjct: 168 ARRIVTRDESPNNKLSSLARLF--RARTEPCHRALADARATVDVLHGLFERLG----NLG 221

Query: 185 FKTNED 190
             T ED
Sbjct: 222 VTTLED 227


>gi|289423924|ref|ZP_06425717.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
 gi|289155701|gb|EFD04373.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
          Length = 188

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 16/165 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEF 69
           V DIET+GL+ + + I+E+GAV + D        Q+      RK+ S EA K++G+T   
Sbjct: 29  VIDIETSGLNPEKNEILELGAVRVRDNIVVAEYEQLI---RPRKSISKEATKVNGLTKRM 85

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D+P    +  +F DF  +     I HN +FD+ FI  +L   NK        IDTL +
Sbjct: 86  LIDEPFVEDVIWDFKDFLGKD--VLIGHNIEFDLEFIRNQLPIRNK-------YIDTLPL 136

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           AR+     R+ L  +C  Y I       H ++ D +     Y KM
Sbjct: 137 ARKLLKIKRHRLIDICHHYKIP---EPNHRSISDCNATHLCYQKM 178


>gi|56477410|ref|YP_158999.1| nuclease subunit Cho of the excinuclease complex (UvrC homolog
           protein) [Aromatoleum aromaticum EbN1]
 gi|56313453|emb|CAI08098.1| Nuclease subunit Cho of the excinuclease complex (UvrC homolog
           protein) [Aromatoleum aromaticum EbN1]
          Length = 469

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 86/159 (54%), Gaps = 9/159 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+ETTG +  +DR+ EI AV  ++  +    ++  + P  R       +L GITDE 
Sbjct: 8   VLIDVETTGANPVSDRVTEI-AVLRIERGEIVGRWESLVNPE-RPIPALIQRLVGITDEM 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P+F+ +        +   A ++AHNA+FD GFI  E  R+ +     + ++ T+ +
Sbjct: 66  VAGAPTFAELADSVRGHLD--GAVFVAHNARFDYGFIRNEFSRLGQQ--FEASVLCTVKL 121

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           +R  +P   R+ L++L +R+G T    ++H A+ D+ +L
Sbjct: 122 SRALYPEHHRHGLDALIERHGFTCG--ARHRAMGDTDVL 158


>gi|193213751|ref|YP_001994950.1| hypothetical protein Ctha_0031 [Chloroherpeton thalassium ATCC
           35110]
 gi|193087228|gb|ACF12503.1| DNA polymerase III, epsilon subunit [Chloroherpeton thalassium ATCC
           35110]
          Length = 578

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 93/183 (50%), Gaps = 13/183 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG     +RIIEI A++  +  +     +  + P  ++ S    +  GIT+  +
Sbjct: 26  VVDLETTGGLKPENRIIEICAIKCRNGQEVG-MLESLVNPE-QQISYFISQYTGITNSMV 83

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + P   S+ ++  +FF  Q   ++AHN  FD+GFIN EL+R     L  +R + T  +A
Sbjct: 84  DNAPVIQSLLTKVSEFF--QETIFVAHNVPFDMGFINMELERNGYAKLT-NRWLCTFRLA 140

Query: 131 RRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           RR  P+  + +L  L K +GI +   HR++        LL+++ I      +Q   G +T
Sbjct: 141 RRLLPTQQKKNLGDLAKYFGIIVENRHRARGDCEATIKLLAELIIL-----AQEQHGVET 195

Query: 188 NED 190
            E+
Sbjct: 196 AEE 198


>gi|160878305|ref|YP_001557273.1| DNA polymerase III, epsilon subunit [Clostridium phytofermentans
           ISDg]
 gi|160426971|gb|ABX40534.1| DNA polymerase III, epsilon subunit [Clostridium phytofermentans
           ISDg]
          Length = 235

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 11/169 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65
           M  +  DIE+TGL  + DRIIEI A+  +D  K    F+  + P      PE + +L GI
Sbjct: 1   MNFLAIDIESTGLSPEKDRIIEIAAIRYID-GKPKERFEKLINPGC--PLPERITELTGI 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T++ L    +   +  EF  F  E     + HN   D  FI     R+        + ID
Sbjct: 58  TEDMLAGAMTEREVIKEFLTFAGEDV--LLGHNVSVDFSFIKTAADRLKIGY--ERQGID 113

Query: 126 TLSIARR-KHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVY 171
           TL ++R  K    + +L S+C+ YGI    SHR+   A+  + L   +Y
Sbjct: 114 TLYLSRTLKSDLEKKNLESMCEHYGIIRECSHRALEDAIAAATLYQKLY 162


>gi|319440229|ref|ZP_07989385.1| putative exonuclease [Corynebacterium variabile DSM 44702]
          Length = 186

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 13/162 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEA 59
           +R++    +V D ETTGLD  +DRIIE+ A+ +    +  R   +F  +   GR      
Sbjct: 14  LRRSLRDCVVVDCETTGLDPDSDRIIEVAALRV----REGRPVALFHRVVDPGRPLPGFI 69

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             L G+TD+ ++  P    I  +   F        + HN  FD+ FI+AE+   +  P  
Sbjct: 70  TSLTGLTDQQVRQAPPVGDILGDLSAFLAHDTV--VGHNVGFDLAFIDAEITTTHSTPRA 127

Query: 120 PSRIIDTLSIARRKHPSSRND---LNSLCKRYGITISHRSKH 158
            S  + T   AR   P SR     LN+L + +   + HR  H
Sbjct: 128 ASLSLCTAESARALVPRSRVGRYRLNTLAEAFD--LDHRPSH 167


>gi|257055123|ref|YP_003132955.1| hypothetical protein Svir_10720 [Saccharomonospora viridis DSM
           43017]
 gi|256584995|gb|ACU96128.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Saccharomonospora viridis DSM 43017]
          Length = 570

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 10/169 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG+      I EIGAV++         F   + P G    P+ + L GIT   
Sbjct: 18  VVVDLETTGVTPDGAGITEIGAVKVRGGEVVGE-FATLVDP-GVPIPPQIVALTGITPAM 75

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P    +   F +F +   A  +AHNA FDV F+ A  Q    +   P+ ++ TL +
Sbjct: 76  VRSAPRIEQVLPTFLEFVS--GAVLVAHNAGFDVSFLKAACQTHGYEWPKPT-VVCTLKL 132

Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR   +  +  + L++L   +G   +   KH AL D+    DV   ++
Sbjct: 133 ARRVLGRQETRGHRLSTLASLFGARST--PKHRALDDAKATVDVLHGLL 179


>gi|187925051|ref|YP_001896693.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN]
 gi|187716245|gb|ACD17469.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans
           PsJN]
          Length = 383

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 90/168 (53%), Gaps = 13/168 (7%)

Query: 10  IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67
           IVF D+ETTG  +   RI E+G VE+     +  +  V    + ++  P  ++ L GIT+
Sbjct: 15  IVFVDLETTGGSTAEHRITEVGVVEIGPAGVSRWSSLV----DPQQPIPSFIQQLTGITN 70

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  P+F  I  E +   N +   ++AHNA FD GF+  E +R+     DP  ++ T+
Sbjct: 71  AMVRGAPTFDVIAPELFKRLNGKL--FVAHNASFDRGFLRGEFRRVGLA-FDPD-VLCTV 126

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++R   P+  R+ L++L +R+ +  S R  H AL D+ L+   + ++
Sbjct: 127 RLSRALFPAEKRHGLDALVERHALVPSDR--HRALADADLIWQFWQRL 172


>gi|82548268|gb|ABB82959.1| putative DNA polymerase type III, exonuclease domain [uncultured
           organism HF70_19B12]
          Length = 270

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 7/143 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTGL+ + DRI++   +   +D S      QV L   G K    ++ +HGI++E +
Sbjct: 12  FDTETTGLNPRKDRILQYAFIGRDVDGSSV---CQVELIDPGIKIPEASMNVHGISNEDV 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSI 129
             + SF    ++  +  +   A  + HN   FD  FI  E  R+ +    P  ++DTL +
Sbjct: 69  TGRGSFGMHSNDIAELID--GAIIVGHNINAFDWRFIEFEFMRVGEAVPSPYALVDTLEL 126

Query: 130 ARRKHPSSRNDLNSLCKRYGITI 152
           AR      R+ L  LCKRYGI +
Sbjct: 127 ARGLRIPGRHTLGHLCKRYGIGL 149


>gi|300773503|ref|ZP_07083372.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300759674|gb|EFK56501.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 469

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 9/149 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69
           + DIETTG  + N  I EI A+ L D  +   ++Q  + P+  K  P  ++ L GIT E 
Sbjct: 15  IVDIETTGGYAANSGITEI-AIYLHDGHQIIDSYQTLINPH--KEIPYHIQMLTGITPEM 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D PSF  + ++ + F   +N  ++AHN  FD  F+ A L+        P   + T+ +
Sbjct: 72  LTDAPSFEDVAADIYSFL--ENKVFVAHNVNFDYSFVYAHLKACGYQWKSPK--LCTVRL 127

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSK 157
           AR      S   L +LC+R  I IS R +
Sbjct: 128 ARNIFKGFSSYSLGNLCQRLDIPISDRHR 156


>gi|312601484|gb|ADQ90739.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 168]
          Length = 1447

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 95/175 (54%), Gaps = 19/175 (10%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLH 63
           +K++ ++FD+ETTGL +  + IIE GA+ L +  +  +  Q F+ P G+   P A+ K+ 
Sbjct: 385 DKLKFVIFDLETTGLSAFYNEIIEFGAIVLQNGIEIEKH-QFFIKPTGK--IPSAITKIT 441

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE------QNAEWIAHNAKFDVGFINAELQRINKDP 117
           GI+ + + D+ + S      W+   E      +++  +AHNA FD  F+    ++  K  
Sbjct: 442 GISQKMI-DETAIS------WEIALEKITKIIKDSVLVAHNAAFDFSFLEQFFRQKAKKS 494

Query: 118 LDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           L  + IIDTL ++R  +P+ + + L ++ KRY I       H A  D+ +L+ ++
Sbjct: 495 LK-NPIIDTLEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIW 548


>gi|284991755|ref|YP_003410309.1| DNA polymerase III subunit epsilon [Geodermatophilus obscurus DSM
           43160]
 gi|284065000|gb|ADB75938.1| DNA polymerase III, epsilon subunit [Geodermatophilus obscurus DSM
           43160]
          Length = 609

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG   K+  I EIGAV++    +    FQ  + P G +  P    L GIT   
Sbjct: 40  VVVDLETTGGSPKDSAITEIGAVKVRG-GEVLGEFQTLVDP-GCEIPPYISVLTGITSTM 97

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P   ++   F +F   + A  +AHNA FD+GF+ A     N  P   +  +DT  +
Sbjct: 98  VAAAPRIGAVLPHFLEF--ARGAVLVAHNAPFDLGFLKAACA-ANGIPWPATASVDTAVL 154

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSK----HGALLDSHLLSDV 170
           ARR    SR+++ + CK   +    R+     H AL D+    DV
Sbjct: 155 ARRLL--SRDEVPN-CKLATLAPYFRTSTEPCHRALADARATVDV 196


>gi|156741527|ref|YP_001431656.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM
           13941]
 gi|156232855|gb|ABU57638.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM
           13941]
          Length = 944

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 15/168 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           +  D+ETTGL++  D IIEI AV+     +   TF   + P  R + P  + +L GIT E
Sbjct: 6   VAIDVETTGLEAGVDEIIEIAAVK-FRTGEVIETFDTLVQP--RHSLPLNSSRLTGITAE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P FS +   F  F   +N   + HN +FD+  + A+  R+      P    DT  
Sbjct: 63  MLAGAPRFSEVAPRFAAFL--KNYPLVGHNVRFDINMLQAQGMRL------PQPAFDTFE 114

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A    P +    L++L +  GI   H   H AL D+ +   V++ ++
Sbjct: 115 LATLLMPRTPAYRLSALAETLGIV--HDEAHRALSDADVTRQVFLHLL 160


>gi|315221792|ref|ZP_07863704.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           anginosus F0211]
 gi|315189025|gb|EFU22728.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           anginosus F0211]
          Length = 819

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 93/174 (53%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + + K +  V D+E T   S N +II++G V L++  +  +T++  + P+  K  P   +
Sbjct: 1   MTQEKRKYAVVDLEATSASS-NAKIIQVGIV-LIENGQIVKTYETDVNPH-EKLDPHIRQ 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L+  P FS +  E ++    ++A ++AHN KFD   +   L     + + P 
Sbjct: 58  LTGLTDKRLRKAPDFSQVAREIYELI--EDAIFVAHNVKFDANLLAEALFWEGFELVTPR 115

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+   P+  + +L  LC++  I + H   H AL D+   + +++K+
Sbjct: 116 --VDTVELAQVFFPTFEKYNLGILCEQLDIPLKH--AHTALADASATATLFLKI 165


>gi|308446414|ref|XP_003087176.1| hypothetical protein CRE_18392 [Caenorhabditis remanei]
 gi|308260385|gb|EFP04338.1| hypothetical protein CRE_18392 [Caenorhabditis remanei]
          Length = 137

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 3/82 (3%)

Query: 103 VGFINAELQRINKDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           + F++ E +R     L +   + DTL++A+ KHP  +N L++L +RY I    R+ HGAL
Sbjct: 1   MNFLDMEFKRSGLQALSEVCEVTDTLAMAKSKHPGQKNSLDALVRRYEIPQRDRTFHGAL 60

Query: 162 LDSHLLSDVYIKMMVGGSQINF 183
           LD+ +LSDVY+ M   G Q++F
Sbjct: 61  LDAEILSDVYLAMT--GGQVSF 80


>gi|195646046|gb|ACG42491.1| DNA polymerase III subunit epsilon [Zea mays]
          Length = 315

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 21/179 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDE 68
           +VFDIETTG   ++DRIIE    +L+     N TFQ  + P    KN+     +HGI + 
Sbjct: 116 LVFDIETTGFSRRDDRIIEFAVRDLM--GGKNSTFQTLINPEKDVKNT----YVHGINNS 169

Query: 69  FL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDP 120
            L   D P F  I      +   +  +     W+AHN + FDV F+  E +R   +    
Sbjct: 170 MLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGD 229

Query: 121 SRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DTL IA++   S+ + L+S     L +RY I ++  S H A+ D   LS V  K+
Sbjct: 230 WLFVDTLPIAKQLVDSNGSKLSSVSLKFLRERYKIPLTG-SAHRAMQDVTTLSYVLQKL 287


>gi|294140713|ref|YP_003556691.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12]
 gi|293327182|dbj|BAJ01913.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12]
          Length = 206

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 21/199 (10%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I+ D ETTGL  ++ DR IEIGAV + D    + TFQ  + P G + S       GI++ 
Sbjct: 10  IILDFETTGLSPNQGDRAIEIGAVRIQDGIVVD-TFQELMNP-GFRVSGFIEGYTGISNA 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +      + + F DF  + N   +AHNA FD  F++AEL  IN       +   ++ 
Sbjct: 68  MLANAAPCEEVMARFADFIGDHN--LVAHNASFDQRFLDAELDGINLSY--GGKFACSML 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           IARR +  + N        Y    +    H AL DS + + ++++M+             
Sbjct: 124 IARRLYQDAPNHKLGGLVEYKQIENDGVFHRALADSEMTAKLWLQML------------- 170

Query: 189 EDRFFKEEKKTVPNISLLK 207
            D    E   T P+ +L++
Sbjct: 171 -DDMRSEHGITAPSFTLMQ 188


>gi|223946833|gb|ACN27500.1| unknown [Zea mays]
 gi|224030613|gb|ACN34382.1| unknown [Zea mays]
          Length = 315

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 21/179 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDE 68
           +VFDIETTG   ++DRIIE    +L+     N TFQ  + P    KN+     +HGI + 
Sbjct: 116 LVFDIETTGFSRRDDRIIEFAVRDLM--GGKNSTFQTLINPEKDVKNT----YVHGINNS 169

Query: 69  FL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDP 120
            L   D P F  I      +   +  +     W+AHN + FDV F+  E +R   +    
Sbjct: 170 MLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGD 229

Query: 121 SRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DTL IA++   S+ + L+S     L +RY I ++  S H A+ D   LS V  K+
Sbjct: 230 WLFVDTLPIAKQLVDSNGSKLSSVSLKFLRERYKIPLTG-SAHRAMQDVTTLSYVLQKL 287


>gi|59713199|ref|YP_205974.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
 gi|59481447|gb|AAW87086.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
          Length = 212

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 13/170 (7%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  ++ DR IEIGAV+L +    +R FQ  + P G + SP      GI++ 
Sbjct: 16  VVLDFETTGLSPNQGDRAIEIGAVKLENGVVVDR-FQGLMNP-GFRVSPFIENYTGISNR 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D  S   + +EF +F   Q    +AHNA FD  F++ EL  I ++  D       L 
Sbjct: 74  MLADAASCDEVMNEFANFI--QGCNLVAHNASFDKRFLDGELALIQRE-YDGDFACSLLV 130

Query: 129 IARRKHPSSRNDLNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKMM 175
             R    +S + L  L   + I    + HR    AL D+ + + +++ ++
Sbjct: 131 SRRLTQEASSHKLGDLVAYHQIENDGVFHR----ALADAEVTASLWLVLL 176


>gi|113970108|ref|YP_733901.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-4]
 gi|113884792|gb|ABI38844.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4]
          Length = 229

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 10/184 (5%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL  ++  R IEIGAV L++  +    F   + P  R NS       GI+++
Sbjct: 31  VVLDFETSGLSPNQGARAIEIGAV-LIEQGQITARFSELMNPGFRINS-FIEDYTGISNQ 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L      + + + F  F  + +   +AHNA FD  F++AE  +I      P +   +L 
Sbjct: 89  MLAHAAPCAEVMARFAAFIGKHH--LVAHNAAFDQRFLDAEFAQIGHH--YPGQFGCSLL 144

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +ARR +P + N   +   R+    S  + H AL D+ +   ++++M+    Q   G+   
Sbjct: 145 LARRLYPEAINHQLATLVRHKQLPSDGTFHRALADAEMTGHLWLRMLADLKQ---GYAIT 201

Query: 189 EDRF 192
           E  F
Sbjct: 202 EPPF 205


>gi|298244072|ref|ZP_06967878.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297551553|gb|EFH85418.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 1009

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 13/175 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K+ +R I  D+ETTGL ++ D I+E+ A++    S+   TF+ F+ P GR       
Sbjct: 1   MAKKSAIR-IALDLETTGLHAEQDAILEVAAIK-FQGSEVLDTFETFISP-GRSIPYRVQ 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GI  E L   P F +I  +   F  +     + H+  FDVGF    L+R      +P
Sbjct: 58  RLTGIKPELLVGAPPFDAISRQLHTFLGDYPI--VGHSIPFDVGF----LRRWGLAHSNP 111

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             ++DT  +A    PS S  +L  +    GI +    +H A++D+ L   V++ +
Sbjct: 112 --MVDTFELATVLLPSLSSYNLGQVAHSLGIQVP-SDRHRAMVDTVLAMQVFLSL 163


>gi|322515227|ref|ZP_08068225.1| ribonuclease T [Actinobacillus ureae ATCC 25976]
 gi|322118732|gb|EFX90938.1| ribonuclease T [Actinobacillus ureae ATCC 25976]
          Length = 218

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 26/195 (13%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCP 50
           + KN+ R    ++ D+ET GL+++ D ++E+ A+         L+   K +   Q F   
Sbjct: 10  LLKNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPF--- 66

Query: 51  NGRKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFD 102
            G   +P++LK +GI  D  L+     +    E +            Q A  +AHNA FD
Sbjct: 67  EGANINPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKDQGCQRAVIVAHNATFD 126

Query: 103 VGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
             F+ A ++RIN  +DP  P  + DT ++A   +   +  L   C+   I+   +  H A
Sbjct: 127 QAFVQAAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAKISFDGKQAHSA 184

Query: 161 LLDSHLLSDVYIKMM 175
           L D+   ++++  M+
Sbjct: 185 LYDTEKTTELFCAMV 199


>gi|225376763|ref|ZP_03753984.1| hypothetical protein ROSEINA2194_02405 [Roseburia inulinivorans DSM
           16841]
 gi|225211389|gb|EEG93743.1| hypothetical protein ROSEINA2194_02405 [Roseburia inulinivorans DSM
           16841]
          Length = 241

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 9/166 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+E TGL++K DRI+E GA  +   +    TF   + P  RK   + + L GIT+E 
Sbjct: 6   VVIDLEMTGLNAKTDRILEAGAARVRG-NVVTATFSEIINPK-RKLPEKVVSLTGITNEM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                   +  + F+DF  E     +  N  FD  F+      +N         +DTL +
Sbjct: 64  AAQGKETDATLAAFFDFIGEDI--LVGQNVIFDYSFLKQ--WAVNHKRTFERNAVDTLKL 119

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           AR+  P   + DL SLC  +GI   H   H AL D      ++ +M
Sbjct: 120 ARKFLPQEQKKDLASLCSYFGIERVH--AHRALDDVMETQQIFEQM 163


>gi|212723090|ref|NP_001131224.1| hypothetical protein LOC100192533 [Zea mays]
 gi|194690922|gb|ACF79545.1| unknown [Zea mays]
          Length = 315

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 21/179 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDE 68
           +VFDIETTG   ++DRIIE    +L+     N TFQ  + P    KN+     +HGI + 
Sbjct: 116 LVFDIETTGFSRRDDRIIEFAVRDLM--GGKNNTFQTLINPEKDVKNT----YVHGINNS 169

Query: 69  FL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDP 120
            L   D P F  I      +   +  +     W+AHN + FDV F+  E +R   +    
Sbjct: 170 MLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGD 229

Query: 121 SRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DTL IA++   S+ + L+S     L +RY I ++  S H A+ D   LS V  K+
Sbjct: 230 WLFVDTLPIAKQLVDSNGSKLSSVSLKFLRERYKIPLTG-SAHRAMQDVTTLSYVLQKL 287


>gi|221135181|ref|ZP_03561484.1| ribonuclease T [Glaciecola sp. HTCC2999]
          Length = 212

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G +++ D ++EI AV + +D +     ++     + P  G    P A++ +G
Sbjct: 17  VIIDVETAGFNAQTDALLEIAAVTVRMDEAGMLHPDQEIHYHINPFEGANIEPAAIEFNG 76

Query: 65  I---------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114
           I          DE    K   S   S+     N Q +  +AHNA FD+ F+NA L R N 
Sbjct: 77  IKVDCALRGAVDETEAMK-GLSKAISKLQKAANCQRSVIVAHNASFDMSFVNAALARTNV 135

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT S+A       +  L   C+   I    +  HGAL D+   ++++  
Sbjct: 136 KRSPFHPFVSFDTTSLAALT--LGQTVLVKACEAANIAFDQKQAHGALYDAQRTAELFCF 193

Query: 174 MM 175
           MM
Sbjct: 194 MM 195


>gi|261868521|ref|YP_003256443.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413853|gb|ACX83224.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 217

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 26/195 (13%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV--------ELLDYSKTNRTFQVFLCP 50
           I K++ R    +V D+ET GL++K D ++E+ A+         LL   K +   Q F   
Sbjct: 12  ILKHRFRGYLPVVIDVETAGLNAKTDALLELAAITLKMDENGNLLPDQKCHFHIQAF--- 68

Query: 51  NGRKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFD 102
            G    PE+LK +GI  D  L+   S +   SE +    +       Q +  +AHNA FD
Sbjct: 69  EGANIDPESLKFNGIDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNAAFD 128

Query: 103 VGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
            GF+ A  QR+N  ++P  P    DT +++       +  L   C+   I    +  H A
Sbjct: 129 QGFLMAAAQRMNAKRNPFHPFSTFDTATLSGFMF--GQTVLVKACQAAKIPFDSQQAHSA 186

Query: 161 LLDSHLLSDVYIKMM 175
           L D+   ++++  M+
Sbjct: 187 LYDTERTAELFCYMV 201


>gi|319950676|ref|ZP_08024577.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4]
 gi|319435659|gb|EFV90878.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4]
          Length = 547

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 10/169 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG     D I EIGAV +    +       F+  +G        +L GI  E 
Sbjct: 39  VVVDLETTGTRPGGDEITEIGAVRIRG-GEVQAELSTFVSIDGVLPG-HISRLTGIAPED 96

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   PS   + + F +F   + A  +AHNA+FD+GF+ A          DP  +  TL++
Sbjct: 97  LVGAPSLGEVMATFLEF--SRGAVLVAHNARFDLGFLRAAAAATGHRWPDPPSVC-TLAL 153

Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR   +  +  + L  L    G T+     H AL D+    DV   ++
Sbjct: 154 ARRVLHRGETRGHRLGVLAAHLGATVE--PNHRALQDARATVDVLHALI 200


>gi|297194325|ref|ZP_06911723.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152225|gb|EFH31608.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 658

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ET+GL ++ DR++ +  V +         F   L P      P  + +HG+T E L
Sbjct: 22  LVDVETSGLVARRDRVLSVAVVTVGPDGAQTGEFSTLLDPG---CDPGPVHVHGLTAERL 78

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P+F  +          +    +AHNA+FD  F+  E  R     L  +R + TL++ 
Sbjct: 79  HGAPAFEEVAQRISQML--EGRVLVAHNAQFDYDFLAHEFARAGVS-LPVARRLCTLALN 135

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           RR  P +++  L +L   YG  +     H AL D+ +L+ V
Sbjct: 136 RRVDPPTQDLRLGTLAAHYG--VPQLRAHDALDDTRVLAGV 174


>gi|209519136|ref|ZP_03267941.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
 gi|209500436|gb|EEA00487.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
          Length = 382

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 90/168 (53%), Gaps = 13/168 (7%)

Query: 10  IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67
           IVF D+ETTG  +   RI E+G VE+     T  +  +    + ++  P  ++ L GIT+
Sbjct: 15  IVFVDLETTGGSTSEHRITEVGVVEVGPTGVTRWSSLI----DPQQPIPSFIQQLTGITN 70

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +   P+F SI    ++  N +   ++AHNA FD GF+ +E +R      DP  ++ T+
Sbjct: 71  DMVHGAPTFESIAPALYERLNGKL--FVAHNASFDRGFLRSEFRRAGLA-FDPD-VLCTV 126

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++R   P   R+ L++L +R+ +  S R  H AL D+ L+   + ++
Sbjct: 127 RLSRALFPGEKRHGLDALVERHALVPSDR--HRALADADLIWQFWQRL 172


>gi|156975103|ref|YP_001446010.1| hypothetical protein VIBHAR_02830 [Vibrio harveyi ATCC BAA-1116]
 gi|156526697|gb|ABU71783.1| hypothetical protein VIBHAR_02830 [Vibrio harveyi ATCC BAA-1116]
          Length = 204

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 13/170 (7%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV+++D    + +FQ  + P G + S       GIT+ 
Sbjct: 8   VVLDFETTGLSPNMGDRAIEIGAVKIVDGEVVD-SFQQLMNP-GFRVSSFIEGYTGITNN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P+   + + F +F   +N   IAHNA FD  F++AEL+RI            +L 
Sbjct: 66  MLRTAPNCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERIGCGY--SGEFACSLL 121

Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +ARR     PS +  L  L  RY    +    H AL D+ + + +++ M+
Sbjct: 122 VARRLIQDAPSHK--LGELV-RYKNIENDGVFHRALADAQVTAKLWLLMV 168


>gi|311068754|ref|YP_003973677.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus atrophaeus 1942]
 gi|310869271|gb|ADP32746.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus atrophaeus 1942]
          Length = 930

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 92/174 (52%), Gaps = 11/174 (6%)

Query: 5   NKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KL 62
           NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN  K+ P  + +L
Sbjct: 2   NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN--KSIPFFIEQL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT+  ++++  F ++  E +   +   A ++AHN  FD+GF+  EL       L    
Sbjct: 59  TGITNSMVENEQPFEAVAEEVFQLLD--GAYFVAHNIHFDLGFVKYELNEAGFR-LPDCE 115

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++DT+ ++R  +P      L  L +   + + H + H A  D+ +   +++K++
Sbjct: 116 VLDTVELSRIVYPGFEGYKLTELSEE--LQLKHENPHRADSDAEVTGFIFLKII 167


>gi|332705935|ref|ZP_08426009.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L]
 gi|332355339|gb|EGJ34805.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L]
          Length = 818

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 8/154 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTG     D ++EI A+ L+D  K  R F  ++      +  E+ ++HG +D FL
Sbjct: 465 VFDVETTGFSVSQDEVVEIAAIRLVDGKKQAR-FHAYI--TNTVSVGESERIHGHSDRFL 521

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +   +   +F EF++F    ++  + HN  FD+  + A+ Q+         +  DTL +
Sbjct: 522 AENGRNAKHVFGEFFEFVG--DSLLVGHNVGFDIKMVTAQAQKAGVSYPKKLQWEDTLEL 579

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           A R   S R  L  L +   +T  H   H A+ D
Sbjct: 580 ANRFIESERYSLEVLAEHLNLT--HLPSHKAMDD 611


>gi|152975987|ref|YP_001375504.1| DNA polymerase III subunit epsilon [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024739|gb|ABS22509.1| DNA polymerase III, epsilon subunit [Bacillus cytotoxicus NVH
           391-98]
          Length = 299

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 11/164 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG    NDRII++ AV   ++   ++ F  F+ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFHPYNDRIIQVAAVRYRNHELADQ-FVSFVNPE-RSIPSRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIIDTLS 128
           + D P+   +   F  F    N   +AHNA FD+ F+ + + R      +P +++IDT+ 
Sbjct: 69  VSDAPTVQEVLPLFLAFLG--NDTIVAHNASFDMRFLKSNMSRFQLG--EPNNKVIDTVL 124

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +A++    + N  L +L +  GI +   S H AL D    + VY
Sbjct: 125 LAKKYMKHAPNFKLETLKRMLGIRL---SSHNALDDCITCAAVY 165


>gi|308174031|ref|YP_003920736.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606895|emb|CBI43266.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens
           DSM 7]
 gi|328552843|gb|AEB23335.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus amyloliquefaciens TA208]
 gi|328912360|gb|AEB63956.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens
           LL3]
          Length = 928

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 9/173 (5%)

Query: 5   NKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN +   P   +L 
Sbjct: 2   NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-QDIPPFIEQLT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+   ++++  F ++  E +   +   A ++AHN  FD+GF+  EL     +  D   +
Sbjct: 60  GISTGMVENELPFEAVAEEIFHLLD--GAYFVAHNIHFDLGFVRHELSEAGYELTD-CEV 116

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DT+ ++R   P      L  LC    + I H   H A  D+ +   +++ ++
Sbjct: 117 LDTVELSRIVFPGFEGYKLGELCAE--LNIVHDRPHRADSDAEVTGLIFLDIL 167


>gi|154148582|ref|YP_001406342.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC
           BAA-381]
 gi|153804591|gb|ABS51598.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC
           BAA-381]
          Length = 262

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 12/160 (7%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDEFLK 71
           DIET G   K  +IIEIGA+++      N TF+ F+  +   N PE  ++L GI    LK
Sbjct: 79  DIETNGGIDKG-QIIEIGAIKVRAKEILN-TFKTFVYAS---NIPENIVELTGIHTNDLK 133

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + P  S++   F  F  +  + ++AHN KFD GFI+  LQ+I    L  +R IDT+ +A+
Sbjct: 134 NAPHLSNVLENFRLFLGD--SVFVAHNVKFDYGFISESLQKIGFGGL-LNRRIDTIDLAK 190

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           R   + +  L+SL +  GI   H   H A  D+    +++
Sbjct: 191 RTIAAQKYGLSSLKELLGIENEH---HRAFSDALSCYEIF 227


>gi|253682510|ref|ZP_04863307.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum D str. 1873]
 gi|253562222|gb|EES91674.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum D str. 1873]
          Length = 1443

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 92/164 (56%), Gaps = 9/164 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG  S+ D+IIEIGAV++ + +  + +F  F+ P   K      +L  IT++ 
Sbjct: 431 VVFDLETTGFSSEYDKIIEIGAVKIKNGNIID-SFSTFVNPE-IKIPYNITELTSITNDD 488

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+  +  ++  +F +F   +++  +AHNA FD+ FI      ++ D      ++DT+ +
Sbjct: 489 VKNADTIDNVLPKFMEFC--KDSVLVAHNANFDMSFIRKNCNDLSIDI--NYTVMDTVPL 544

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           A+   P   R  LN++ K  G+++ +   H A+ D+   +D+ +
Sbjct: 545 AKFLFPELKRYKLNTIAKHLGVSLENH--HRAVDDAKATADILL 586


>gi|261496609|ref|ZP_05992989.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307812|gb|EEY09135.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 221

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 20/192 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGR 53
           + KN+ R    +V D+ET GL+++ D ++E+ A+ + +D   Y   ++     + P  G 
Sbjct: 20  LLKNRFRGYLPVVIDVETAGLNAQTDALLELAAITVKMDENGYLVEDQKCHFHIKPFEGA 79

Query: 54  KNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGF 105
             +PE+LK +GI  D  L+   + +    E +            Q A  +AHNA FD  F
Sbjct: 80  NINPESLKFNGIDIDNPLRGAVAENIAIPEMFKMVRRAMKEQGCQRAIIVAHNATFDQSF 139

Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A ++RIN  +DP  P  + DT ++A   +   +  L   C+   I       H AL D
Sbjct: 140 LQAAIKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQAAQINFDGHQAHSALYD 197

Query: 164 SHLLSDVYIKMM 175
           +   ++++  M+
Sbjct: 198 TEKTTELFCAMV 209


>gi|95929273|ref|ZP_01312017.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
 gi|95134771|gb|EAT16426.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
          Length = 217

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 7/166 (4%)

Query: 10  IVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ET+G+   + DR IE+GAV++ D  +    F+  + P G + S    +  GIT++
Sbjct: 11  IVLDFETSGMAPQRGDRAIEVGAVKVND-GRIVDHFESLMNP-GFRVSSFIEEFTGITND 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P    +  +F +F     A  +AHNA FD  F+ +E  RI +  L   R   ++ 
Sbjct: 69  ELRRAPRCEEVMHQFSEFIG--GAPLVAHNASFDQRFLKSEFARIGECKL--LRFGCSML 124

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +ARR +P + N   +    Y    S    H AL D+ + + ++++M
Sbjct: 125 VARRLYPEAPNHKLATLVAYKNLPSQGVFHRALADAEMTAHLWMEM 170


>gi|323489901|ref|ZP_08095123.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2]
 gi|323396408|gb|EGA89232.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2]
          Length = 202

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 75/133 (56%), Gaps = 11/133 (8%)

Query: 4   KNKMRKI----VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           K+ M+K+    V D ETTGL   ND+II+IGAV+ +++ +   T  + + P  R  S   
Sbjct: 33  KSSMQKVENYVVLDFETTGLRPGNDKIIQIGAVKYVNHER-EETMYLMVNPQ-RSISNTI 90

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            ++ GIT++ +++ P    I  +   F    +   IAHNA FD+GF+ A L+ I   P+ 
Sbjct: 91  TRITGITNKDVENAPVIEDIAHDLITFIG--DLPIIAHNAPFDMGFLYA-LEDIT--PIP 145

Query: 120 PSRIIDTLSIARR 132
              +IDT+ +AR+
Sbjct: 146 EYTVIDTVKLARK 158


>gi|212635482|ref|YP_002312007.1| DNA polymerase III [Shewanella piezotolerans WP3]
 gi|212556966|gb|ACJ29420.1| DNA polymerase III [Shewanella piezotolerans WP3]
          Length = 222

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 85/169 (50%), Gaps = 11/169 (6%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL  ++ DR IEIGAV+L      +R FQ  + P G + S       GI+++
Sbjct: 25  IVLDFETTGLSPNQGDRAIEIGAVKLQHGIVVDR-FQELMNP-GFRISGFIESYTGISNQ 82

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +      +   F DF  + N   +AHNA FD  F++AEL  I ++         ++ 
Sbjct: 83  MLNNAAPCEEVMERFADFIADYN--MVAHNASFDQRFLDAELNSIGREY--RGEFACSML 138

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSK-HGALLDSHLLSDVYIKMM 175
           IARR +  + N  L SL       I H    H AL DS + +D+++ M+
Sbjct: 139 IARRLYQEAPNHKLGSLINYK--QIKHDGVFHRALADSEMTADLWLVML 185


>gi|300767360|ref|ZP_07077272.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300495179|gb|EFK30335.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 936

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 19/181 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPE 58
           M  K      V DIETTG   K+ DRII+IG      + K N+    F    N     P 
Sbjct: 1   MTMKPNTTYAVVDIETTGTSVKDGDRIIQIGCA----FVKNNKIINTFATDVNPLTTVPA 56

Query: 59  ALK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            ++ L GI++  ++  P F  +    +     Q   ++AHN  FD+ FIN+ELQR+    
Sbjct: 57  VIENLTGISNARVRKAPPFDDLAGTVYSLL--QGTVFVAHNVNFDLPFINSELQRVGYPE 114

Query: 118 LDPSRIIDTLSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L P + +DT+S+++   P++ +    DL+ L     + I H   H A  D+   + ++I 
Sbjct: 115 L-PIQAVDTVSLSQILLPTASSFRLRDLSHL-----LAIDHNHPHSADSDAIATAHLFIT 168

Query: 174 M 174
           +
Sbjct: 169 L 169


>gi|39996485|ref|NP_952436.1| exonuclease [Geobacter sulfurreducens PCA]
 gi|39983365|gb|AAR34759.1| exonuclease [Geobacter sulfurreducens PCA]
 gi|298505487|gb|ADI84210.1| 3'-to-5' exonuclease, putative [Geobacter sulfurreducens KN400]
          Length = 181

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 12/185 (6%)

Query: 4   KNKMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           KN   +   D+ETTGL     DR++E+ AV L+D  +    F   +     K  P  + +
Sbjct: 2   KNHHLQAAIDVETTGLFPGYGDRVVEVAAV-LVDEGQIVSEFSSLI--RVTKAIPRHVSM 58

Query: 63  -HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            HGIT++ L D+P    ++    DF     A  +AHNA+FD+ F+  E  R+    L+ S
Sbjct: 59  IHGITNDMLADQPLPEEVYPALGDFIG--TALLVAHNARFDLAFLRHEFGRLGLS-LN-S 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           R   TL +ARR+ P  + + L ++ +  +G        H AL D+ L + V+ ++  GG 
Sbjct: 115 RSACTLELARRRLPELTDHRLETVYQHLFGAVPEGTRCHRALDDARLTARVWGELG-GGK 173

Query: 180 QINFG 184
            +  G
Sbjct: 174 AMKSG 178


>gi|291276271|ref|YP_003516043.1| DNA polymerase III subunit epsilon [Helicobacter mustelae 12198]
 gi|290963465|emb|CBG39295.1| Putative dna polymerase III epsilon subunit [Helicobacter mustelae
           12198]
          Length = 247

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 20/165 (12%)

Query: 13  DIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGIT 66
           DIETTG    +  IIEIGA+     E++D      TF+  +     ++ PE + +L GI 
Sbjct: 71  DIETTGSKPNHSSIIEIGAIKYHGGEIID------TFETLVFS---QSVPENITELTGID 121

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L D PS   +   F  F    N+ ++AHN  FD GFI+  L R N+  L   R+  T
Sbjct: 122 AGMLADAPSEREVLQRFRKFLG--NSVFVAHNVVFDYGFISDRLLRYNEPYLLNPRLC-T 178

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           + +ARR   S+R  L  L    GI I    +H AL D+ +   V+
Sbjct: 179 VELARRGILSARYSLGHLNAFLGIGID--KQHRALSDAFICLKVF 221


>gi|269115238|ref|YP_003303001.1| DNA polymerase III polC-type [Mycoplasma hominis]
 gi|268322863|emb|CAX37598.1| DNA polymerase III polC-type [Mycoplasma hominis ATCC 23114]
          Length = 1437

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 90/169 (53%), Gaps = 10/169 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL  + D IIE GA  + + + T +  Q FL    R+ S   ++   I +E 
Sbjct: 408 VVFDLETTGLSPRLDDIIEFGATIVKNNTITQK-IQFFL-QTKRELSAFTVESSHINNEM 465

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTL 127
           LK+  +      + ++   ++ A  +AHNA FD+ F   +  ++    LD S+I  +DTL
Sbjct: 466 LKNGYAQEEGIKKIYEILKDKIA--VAHNANFDINFCKEKFSKLG---LDNSKIFGLDTL 520

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +++   +P   R+ L  + KR+ I       H    D+++L+ ++IKM+
Sbjct: 521 ALSYFLNPDEFRHSLGYVAKRFNIIYDTTVAHRGDYDANVLAKIWIKMI 569


>gi|89898431|ref|YP_515541.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56]
 gi|89331803|dbj|BAE81396.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56]
          Length = 228

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG     DRIIEI A      + T  +F  ++ P       EA K+HGIT   
Sbjct: 5   IFYDTETTGTQIDKDRIIEIAAFN----NVTKESFVTYVNPK-IPIPEEASKIHGITTST 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLS 128
           +   P F   + +F DF   + A  +AHN   FD   +  E +R + +PL   R ID+L 
Sbjct: 60  VASAPDFPEAYKQFRDFCGNE-AVLVAHNNDGFDFPLLEKECRRHSLEPLT-LRTIDSLK 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            A++  P   +++L  L + YG   +    H AL D   L DV+  ++
Sbjct: 118 WAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLHDVFSALI 163


>gi|296166059|ref|ZP_06848506.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295898580|gb|EFG78139.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 648

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 35/225 (15%)

Query: 10  IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ETTG  +K       D I EIGAV++         F   + P  R   P+ ++L 
Sbjct: 44  VVVDLETTGGRTKATGGNAPDAITEIGAVKVRGGVVLGE-FATLVDPE-RSIPPQIVRLT 101

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   + D P   ++   F +F    +A  +AHNA FD+GF+ A   R +     P ++
Sbjct: 102 GITTAMVSDAPRIDAVLPMFLEFAG--DAVLVAHNAGFDIGFLRAAAARCDIAWPRP-KV 158

Query: 124 IDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176
           + T+ +ARR     + PS R  L +L + +   ++ +  H AL D+    +V   ++  V
Sbjct: 159 LCTVRLARRVLSREEAPSVR--LGALARLF--AVAAQPTHRALDDARATVEVLHALIERV 214

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           G    N G  T     + + +  +P+++  +R K    R+  E L
Sbjct: 215 G----NQGVHT-----YADLRSYLPDVTPTQRRK----RVLAEGL 246


>gi|111224492|ref|YP_715286.1| hypothetical protein FRAAL5108 [Frankia alni ACN14a]
 gi|111152024|emb|CAJ63748.1| putative DNA-directed DNA polymerase [Frankia alni ACN14a]
          Length = 580

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 77/167 (46%), Gaps = 16/167 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG  +    I EIGAV +    +        + P+     P    + GITD  
Sbjct: 22  VVVDLETTGTSAATSEITEIGAVRVRG-GEVLAEMSTLVRPSA-GIPPMVSVITGITDAM 79

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTLS 128
           +   P+ + +   F +F   + A  +AHNA FD+GF+ A  QR    P  P+   +DTL 
Sbjct: 80  VATAPAEAEVVPTFLEF--ARGAVLVAHNAPFDLGFLRAAAQRCGYPP--PAWEHLDTLR 135

Query: 129 IARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           IARR     + P  R  L SL + +    S    H AL D+    DV
Sbjct: 136 IARRLVSRDEAPDCR--LASLARLF--RSSTEPCHRALADARATVDV 178


>gi|324995504|gb|EGC27416.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK678]
          Length = 814

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+   +  E +K
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56

Query: 62  -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P
Sbjct: 57  ELTGLDDERLSQAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAESLFWEGFDLLTP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +LC    + IS  + H AL D+   + +++K+
Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165


>gi|220907711|ref|YP_002483022.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
 gi|219864322|gb|ACL44661.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
          Length = 829

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 15/155 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP--EALKLHGI 65
           R +VFD+ETTG     D +IE+ A+  L++ +    F  ++    R   P  E  ++HG 
Sbjct: 460 RLVVFDVETTGFSGAADEVIELAAIA-LEHGQIREEFNRYI----RNTVPVGETQQVHGY 514

Query: 66  TDEFLKD--KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           +D+FL    +P+ +++F EF +F   Q A  + HN  FD+  + A  +R+  +   P R 
Sbjct: 515 SDDFLATHGQPA-ATVFREFCEF--SQGAVLVGHNLGFDIKMVTAHARRVGIEFPSP-RW 570

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGI--TISHRS 156
            DTL++A R   S    L +L     +  T +HR+
Sbjct: 571 EDTLNLAHRFIQSENYKLATLASSLNLSATPTHRA 605


>gi|260769807|ref|ZP_05878740.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
 gi|260615145|gb|EEX40331.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
          Length = 205

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL  +  DR IEIGAV+L+D  +   TFQ  + P G + S       GIT+ 
Sbjct: 9   IVLDFETTGLSPNMGDRAIEIGAVKLVD-GQVAGTFQQLMNP-GFRVSGFIEGYTGITNT 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+       + +EF  F  +     +AHNA FD  F++AE  RI      P +   ++ 
Sbjct: 67  MLRTALPCEEVMAEFAHFIGD--TPLVAHNASFDKRFLDAEFDRIGVR--YPGQFACSML 122

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IARR    +  + L  L  R+    +  + H AL DS + + +++ M+
Sbjct: 123 IARRLIQNAPTHKLGDLV-RFKQIENDGTFHRALADSQMTASLWMLMV 169


>gi|114047347|ref|YP_737897.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-7]
 gi|113888789|gb|ABI42840.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7]
          Length = 239

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 10/184 (5%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL  ++  R IEIGAV L++  +    F   + P  R NS       GI+++
Sbjct: 41  VVLDFETSGLSPNQGARAIEIGAV-LIEQGQITARFSELMNPGFRINS-FIEDYTGISNQ 98

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L      + + + F  F  + +   +AHNA FD  F++AE  +I      P +   +L 
Sbjct: 99  MLAHAAPCAEVMARFAAFIGKHH--LVAHNAAFDQRFLDAEFAQIGHQ--YPGQFGCSLL 154

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +ARR +P + N   +   R+    +  + H AL D+ +   ++++M+    Q   G+   
Sbjct: 155 LARRLYPEAINHQLATLVRHKQLPTDGTFHRALADAEMTGHLWLRMLADLKQ---GYAIT 211

Query: 189 EDRF 192
           E  F
Sbjct: 212 EPPF 215


>gi|226227286|ref|YP_002761392.1| DNA polymerase III epsilon subunit [Gemmatimonas aurantiaca T-27]
 gi|226090477|dbj|BAH38922.1| DNA polymerase III epsilon subunit [Gemmatimonas aurantiaca T-27]
          Length = 214

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 13/215 (6%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG  +   DRI EI  V++    +    +   + P  R   P    L  IT + 
Sbjct: 8   VVDVETTGTRAAGGDRITEIAIVQV-QGGQVGEVYSQLVNPE-RPIPPYITSLTHITWDM 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D+P+F  I S   D    + + ++AHNA FD  F++ E++R +   L   R+  T+  
Sbjct: 66  VRDQPTFREITSNVLDRL--RGSIFVAHNAPFDWRFVSEEVRRGSGQELSGPRLC-TVRF 122

Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           AR   P  SR  L+ + + +GI I+  HR+   AL  +H L     +M+   S+      
Sbjct: 123 ARAALPQLSRRSLDHVTRYFGIEIAARHRAAGDALATAHALC----RMLNIASEHGVESW 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           T    F      T P  +  +R +     +TK+++
Sbjct: 179 TALQAFVDGPVGTRPRTASDRRRRAFPLPVTKDDI 213


>gi|78224248|ref|YP_385995.1| DNA polymerase III subunit epsilon [Geobacter metallireducens
           GS-15]
 gi|78195503|gb|ABB33270.1| DNA polymerase III, epsilon subunit [Geobacter metallireducens
           GS-15]
          Length = 218

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 82/178 (46%), Gaps = 19/178 (10%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            K   ++ D ETTGL     DR IEIGAV + +    +R FQ  + P G++ S    +  
Sbjct: 2   GKFTAVILDFETTGLSPGYGDRAIEIGAVLVRNNRIVDR-FQSLMNP-GKRVSGFIEEYT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT+E L   P    +   F  F    N   +AHNA FD  F++AEL RI +        
Sbjct: 60  GITNEMLAKAPPAEQVMERFASFIAGHN--LVAHNASFDRRFLDAELSRIGRR--RTGDF 115

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK------HGALLDSHLLSDVYIKMM 175
             ++  ARR + ++ N       R    +SH S       H AL D+ + + ++  M+
Sbjct: 116 ACSMLAARRIYTNAPN------HRLETLVSHLSLQTDGVFHRALADAEMTAQLWTAMI 167


>gi|15618325|ref|NP_224610.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
           CWL029]
 gi|15835943|ref|NP_300467.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138]
 gi|16752629|ref|NP_444893.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39]
 gi|4376690|gb|AAD18554.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029]
 gi|8163413|gb|AAF73657.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila
           pneumoniae AR39]
 gi|8978782|dbj|BAA98618.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138]
 gi|269303286|gb|ACZ33386.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Chlamydophila pneumoniae LPCoLN]
          Length = 237

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG   + DRIIEI A      S T+ +F  ++ P       EA K+HGIT + 
Sbjct: 10  IFYDTETTGTQIERDRIIEIAAYN----SVTDESFLTYVNPEIPIPD-EASKIHGITTDA 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P F   +  F  F  E +     +N  FD   +  E +R + +PL  +R ID+L  
Sbjct: 65  VLSAPKFPEAYEGFRKFCGEDSILVAHNNDGFDFPLLGKECRRHSLEPLT-NRTIDSLKW 123

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A++  P   +++L  L + YG   +    H AL D  +L  V+  ++
Sbjct: 124 AQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVVILHKVFTSLI 168


>gi|242077240|ref|XP_002448556.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor]
 gi|241939739|gb|EES12884.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor]
          Length = 283

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 16/179 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG    ++RI+E    +L      + TFQ  + P  R     A +L+ IT E 
Sbjct: 86  LVFDLETTGFFHVDNRIVEFALRDL--SGGKDCTFQTLINPE-RDVPIYASELNNITTEL 142

Query: 70  L--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121
           +   D P FS +      +   + A      WIAHNAK FDV F+N E  R +       
Sbjct: 143 VCRPDVPRFSDVLPILLAYVRSRQAPGKPVLWIAHNAKGFDVPFLNQEFDRCSAQVPSDW 202

Query: 122 RIIDTLSIAR--RKHPSSRNDLN--SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             +D+L +AR  +K    +N +N  +L +RYG++ S    H A+ D   L ++  K+ +
Sbjct: 203 LFVDSLRLARKLKKIDGKKNLVNLVALGERYGLS-SEGPSHRAMPDVEALCNILPKITL 260


>gi|297562082|ref|YP_003681056.1| DNA polymerase III subunit epsilon [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846530|gb|ADH68550.1| DNA polymerase III, epsilon subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 595

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 11/160 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG  +   RI E+GAV +         F   + P G         L GIT   
Sbjct: 27  VVLDLETTGTSASGSRITEVGAVRVRGGEVVGE-FATLVNP-GTPIPANITLLTGITQSM 84

Query: 70  LKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127
           +   P    +      F + E +   +AHNA FD GF+ A  +R   D P  P  ++DTL
Sbjct: 85  VASAPPMEEVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDWPGYP--VVDTL 142

Query: 128 SIARR--KHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
            +AR       +RN  L +L   +G+ ++    H AL D+
Sbjct: 143 RLARAVLARGETRNHRLATLAAYFGVPVA--PNHRALEDA 180


>gi|53728911|ref|ZP_00134639.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126207670|ref|YP_001052895.1| ribonuclease T [Actinobacillus pleuropneumoniae L20]
 gi|165975638|ref|YP_001651231.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|303250752|ref|ZP_07336948.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307251713|ref|ZP_07533617.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|166228560|sp|A3MYQ4|RNT_ACTP2 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|126096462|gb|ABN73290.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
 gi|165875739|gb|ABY68787.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|302650422|gb|EFL80582.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860799|gb|EFM92808.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 218

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 26/193 (13%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCPNG 52
           KN+ R    ++ D+ET GL+++ D ++E+ A+         L+   K +   Q F    G
Sbjct: 12  KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPF---EG 68

Query: 53  RKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG 104
              +P++LK +GI  D  L+     +    E +            Q A  +AHNA FD  
Sbjct: 69  ANINPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQA 128

Query: 105 FINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+ A ++RIN  +DP  P  + DT ++A   +   +  L   C+   I    +  H AL 
Sbjct: 129 FVQAAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAKIPFDGKQAHSALY 186

Query: 163 DSHLLSDVYIKMM 175
           D+   ++++  M+
Sbjct: 187 DTEKTTELFCAMV 199


>gi|284032480|ref|YP_003382411.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
           17836]
 gi|283811773|gb|ADB33612.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
           17836]
          Length = 415

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 9/167 (5%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL      R+IEI  V L  + +    +   L P  R   P+   +HGI    
Sbjct: 4   VIDTETTGLLPGHRHRVIEIAVVLLDQHGRFEHEWVTLLNPQ-RDLGPQ--HIHGILTAD 60

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIIDTLS 128
           +   P F  +          +    + HN +FD+GF+ AE  R+    PL   R + T++
Sbjct: 61  VLAAPEFVDVARHLGALLAGRMV--VGHNVEFDLGFLRAEFARLGHVVPLITERSMCTMA 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A   +P S+  L + C   GI++  +  H AL D+   ++++   +
Sbjct: 119 LAGYLYPGSKRTLGACCAAAGISL--QGWHSALADTRATAELFATYL 163


>gi|303252005|ref|ZP_07338176.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247168|ref|ZP_07529219.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302649435|gb|EFL79620.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306856306|gb|EFM88458.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 218

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 26/193 (13%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCPNG 52
           KN+ R    ++ D+ET GL+++ D ++E+ A+         L+   K +   Q F    G
Sbjct: 12  KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPF---EG 68

Query: 53  RKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG 104
              +P++LK +GI  D  L+     +    E +            Q A  +AHNA FD  
Sbjct: 69  ANINPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQA 128

Query: 105 FINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+ A ++RIN  +DP  P  + DT ++A   +   +  L   C+   I    +  H AL 
Sbjct: 129 FVQAAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAKIPFDGKQAHSALY 186

Query: 163 DSHLLSDVYIKMM 175
           D+   ++++  M+
Sbjct: 187 DTEKTTELFCAMV 199


>gi|295677334|ref|YP_003605858.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
 gi|295437177|gb|ADG16347.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
          Length = 382

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 91/168 (54%), Gaps = 13/168 (7%)

Query: 10  IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67
           IVF D+ETTG  +   RI E+G VE+     +  +  V    + ++  P  ++ L GIT+
Sbjct: 15  IVFVDLETTGGSTSEHRITEVGVVEVGPAGVSRWSSLV----DPQQPIPSFIQQLTGITN 70

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++  P+F SI    ++  N +   ++AHNA FD GF+ +E +R      DP  ++ T+
Sbjct: 71  DMVRGAPTFESIAPALFERLNGKL--FVAHNASFDRGFLRSEFRRAGIA-FDPD-VLCTV 126

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++R   P   R+ L++L +R+ +  S R  H AL D+ L+   + ++
Sbjct: 127 RLSRALFPGEKRHGLDALVERHALVPSDR--HRALADADLIWQFWQRL 172


>gi|257464923|ref|ZP_05629294.1| ribonuclease T [Actinobacillus minor 202]
 gi|257450583|gb|EEV24626.1| ribonuclease T [Actinobacillus minor 202]
          Length = 216

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 31/206 (15%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCP 50
           + KN+ R    ++ D+ET GL+++ D ++EI A+         L+   K +   Q F   
Sbjct: 10  LLKNRFRGYLPVIIDVETAGLNAQTDALLEIAAITVKMDENGYLVPDQKCHYHIQPF--- 66

Query: 51  NGRKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFD 102
            G   + ++LK +GI  D  L+     +    E +    +       Q A  +AHNA FD
Sbjct: 67  EGANINQDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRKAMKDQGCQRAVIVAHNAAFD 126

Query: 103 VGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
            GF+ A  +RIN  +DP  P  + DT ++A   +   +  L   C+   I    +  H A
Sbjct: 127 QGFLQAAAKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMANIAFDGKQAHSA 184

Query: 161 LLDSHLLSDVYIKMM-----VGGSQI 181
           L D+   ++++  M+     +GG  I
Sbjct: 185 LYDTEKTTELFCTMVNRLKDLGGYPI 210


>gi|148245142|ref|YP_001219835.1| DNA polymerase III subunit epsilon [Clostridium kluyveri DSM 555]
 gi|146337022|gb|ABQ23633.1| DNA polymerase III, epsilon subunit related exonuclease
           [Clostridium kluyveri DSM 555]
          Length = 441

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 103/225 (45%), Gaps = 36/225 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D+ETTGL+   D IIEI A      E++D   T    +VF+ PN          ++ 
Sbjct: 132 VVVDLETTGLEPTRDYIIEIAAAKYENNEIIDTYTTLVNPEVFIPPN-------ITNINH 184

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I ++ +KD P    +   F +F  +     +AHNA FD+ F+NA L  +     +P  II
Sbjct: 185 IDNDMVKDCPEIKEVLPGFMNFIGQ--LPLVAHNAPFDIKFLNANLALLGLYLNNP--II 240

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL I+R+      N      K Y + I  +  H AL D ++   +Y++           
Sbjct: 241 DTLPISRKLFSEIENHKLGTIKEY-LNIDVQDSHRALPDCYVCGQIYLE----------- 288

Query: 185 FKTNEDRFFKEEKKTVPNISL---LKRDKPLFTRITKEELDEHDK 226
           + T E     + KK + NI L   +  +K     I KE L +H+K
Sbjct: 289 YSTKE-----KNKKALANIKLHSDIGLNKEECYSIVKEILKKHNK 328


>gi|33241759|ref|NP_876700.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
           TW-183]
 gi|33236268|gb|AAP98357.1| DNA-directed DNA polymerase III alpha chain [Chlamydophila
           pneumoniae TW-183]
          Length = 232

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG   + DRIIEI A      S T+ +F  ++ P       EA K+HGIT + 
Sbjct: 5   IFYDTETTGTQIERDRIIEIAAYN----SVTDESFLTYVNPEIPIPD-EASKIHGITTDA 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P F   +  F  F  E +     +N  FD   +  E +R + +PL  +R ID+L  
Sbjct: 60  VLSAPKFPEAYEGFRKFCGEDSILVAHNNDGFDFPLLGKECRRHSLEPLT-NRTIDSLKW 118

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A++  P   +++L  L + YG   +    H AL D  +L  V+  ++
Sbjct: 119 AQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVVILHKVFTSLI 163


>gi|28378418|ref|NP_785310.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1]
 gi|28271254|emb|CAD64158.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1]
          Length = 934

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 19/171 (11%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK-LHGITD 67
           V DIETTG   K+ DRII+IG      + K N+    F    N     P  ++ L GI++
Sbjct: 9   VVDIETTGTSVKDGDRIIQIGCA----FVKNNKIINTFATDVNPLTTVPAVIENLTGISN 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  P F  +    +     Q   ++AHN  FD+ FIN+ELQR+    L P + +DT+
Sbjct: 65  ARVRKAPPFDDLAGTVYSLL--QGTVFVAHNVNFDLPFINSELQRVGYPEL-PIQAVDTV 121

Query: 128 SIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           S+++   P++ +    DL+ L     + I H   H A  D+   + ++I +
Sbjct: 122 SLSQILLPTASSFRLRDLSHL-----LAIDHNHPHSADSDAIATAHLFITL 167


>gi|262393711|ref|YP_003285565.1| ribonuclease T [Vibrio sp. Ex25]
 gi|262337305|gb|ACY51100.1| ribonuclease T [Vibrio sp. Ex25]
          Length = 214

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D         T    + P  G     EAL+ +G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLKMDEDGVLHPASTIHFHVEPFEGANLEKEALEFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D +  L+   S      E +     EQ A        +AHNA FD+GF+NA  +R  +
Sbjct: 80  IRDPYSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLGFVNAANERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++   +   +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCG 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|134292561|ref|YP_001116297.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
 gi|134135718|gb|ABO56832.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 205

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL     DR  EI  + L D    +R +Q  +   GR+   + + L GIT+E 
Sbjct: 6   VLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLM-NAGRRIPSDVVALTGITNEM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  S +  E   F        +AHNA FD  F  AEL  +      P     T+ +
Sbjct: 64  IATAPPVSKVMKEAAAFVGSHPV--VAHNAGFDKRFWQAELGSLGVAADHP--FACTMLV 119

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ARR +P +R+  L+SL     +  + R+ H A++D+ + S ++ +M
Sbjct: 120 ARRLYPHARSHRLSSLADLLRLPQAGRA-HRAMVDAEIASHLWCRM 164


>gi|308180572|ref|YP_003924700.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308046063|gb|ADN98606.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 934

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 19/171 (11%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK-LHGITD 67
           V DIETTG   K+ DRII+IG      + K N+    F    N     P  ++ L GI++
Sbjct: 9   VVDIETTGTSVKDGDRIIQIGCA----FVKNNKIINTFATDVNPLTTVPAVIENLTGISN 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  P F  +    +     Q   ++AHN  FD+ FIN+ELQR+    L P + +DT+
Sbjct: 65  ARVRKAPPFDDLAGTVYSLL--QGTVFVAHNVNFDLPFINSELQRVGYPEL-PIQAVDTV 121

Query: 128 SIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           S+++   P++ +    DL+ L     + I H   H A  D+   + ++I +
Sbjct: 122 SLSQILLPTASSFRLRDLSHL-----LAIDHNHPHSADSDAIATAHLFITL 167


>gi|29840147|ref|NP_829253.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC]
 gi|29834495|gb|AAP05131.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC]
          Length = 228

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG     DRIIEI A      + T ++F  ++ P       EA K+HGIT   
Sbjct: 5   IFYDTETTGTQIDKDRIIEIAAYN----NVTKQSFVTYVNPEIPIPE-EASKIHGITTST 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +   P F   + +F DF   + A  +AHN   FD   +  E +R + +PL   R ID+L 
Sbjct: 60  VSSAPKFPEAYKQFCDFCGNE-AILVAHNNDSFDFPLLEKECRRHSLEPLS-LRTIDSLK 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            A++  P   +++L  L + YG   +    H AL D   L +V+  ++
Sbjct: 118 WAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLYNVFSALI 163


>gi|90409038|ref|ZP_01217165.1| ribonuclease T [Psychromonas sp. CNPT3]
 gi|90309845|gb|EAS38003.1| ribonuclease T [Psychromonas sp. CNPT3]
          Length = 204

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-ELLD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ DIET+GL+S+ D I+EI A+   +D   Y  + +T    + P  G    P+AL+  G
Sbjct: 15  VIIDIETSGLNSQTDAILEIAAIFPAMDEQGYLYSAQTIHFNVQPFEGANMDPKALEFTG 74

Query: 65  ITDEF--LKDKPSFSSIFSEFWDF------FNEQN-AEWIAHNAKFDVGFINAELQRIN- 114
           I D F  L+       + +E +         N+ N +  +AHNA FD GFIN   +R N 
Sbjct: 75  I-DPFNPLRGAIDEKEVLTEIFKLVRKHQKINDCNRSILVAHNAAFDQGFINKASERCNF 133

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT S+A       +  L   C++  I  ++   H AL D+ + +D++  
Sbjct: 134 KRIPFHPFVCFDTASMAGLM--LGQTVLAKACEQANIDYNNEEAHSALYDTQVTADLFFY 191

Query: 174 MM 175
           M+
Sbjct: 192 MV 193


>gi|326407322|gb|ADZ64393.1| ATP-dependent DNA helicase DinG [Lactococcus lactis subsp. lactis
           CV56]
          Length = 794

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 94/177 (53%), Gaps = 18/177 (10%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           KN  R  V D+E T   S  ++II+IG V L++  +   TF   + P+     P   +L 
Sbjct: 2   KNMTRYAVVDLEATDAHSSENKIIQIGIV-LVEDGEIVETFSTEVNPH-EPLLPRISELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-----FINAELQRINKDPL 118
           G++D+ LK  P FS + ++  +     ++ ++AHNA+FD G     F+NA L+       
Sbjct: 60  GLSDKQLKTAPEFSEVAAKVRELLT--DSVFVAHNARFDYGLLEKSFLNAGLE------F 111

Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +    +DT+ +AR  +P+  +  L SL ++  + ++H   H A+ D++  +++ +K+
Sbjct: 112 NEMLRVDTVDLARVFYPTFEKYGLESLSEK--LDLAHDHPHAAVSDAYATAELLLKI 166


>gi|225419839|ref|ZP_03762142.1| hypothetical protein CLOSTASPAR_06180 [Clostridium asparagiforme
           DSM 15981]
 gi|225041521|gb|EEG51767.1| hypothetical protein CLOSTASPAR_06180 [Clostridium asparagiforme
           DSM 15981]
          Length = 255

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 110/240 (45%), Gaps = 22/240 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIETTGL+ + D+I EI A+ ++D +   R F   + P GR      ++L GITD  
Sbjct: 17  VAIDIETTGLEPRLDKITEIAALRVVDGAVEGR-FVTLVNP-GRPLGERIVELTGITDGM 74

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128
           L   P+   +      F    +   + HN  FD  F+      +N+  LD  R  IDTL+
Sbjct: 75  LAGAPAIGDVIGPLVRFCG--DLPLLGHNILFDYSFLKR--AAVNQG-LDFQREGIDTLN 129

Query: 129 IARRKHPSS-RNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           + R   P   + +L++ C  Y I    +HR++  A L +HLL   Y K++ G  +     
Sbjct: 130 LCRAFMPGEHKKNLSAACAFYCIEQVEAHRAEADA-LSAHLL---YQKLLEGRGEGREEL 185

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDRYIS 242
            T +   +K +K+      + KR K     + K    +    I TL +N    + DR +S
Sbjct: 186 FTPKSLIYKAKKEQ----PVTKRQKEYLQDLIKCHRIDVTVQIDTLSRNEASRMIDRILS 241


>gi|219684048|ref|YP_002470430.1| hypothetical protein CKR_P20 [Clostridium kluyveri NBRC 12016]
 gi|219570556|dbj|BAH08539.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 444

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 103/225 (45%), Gaps = 36/225 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D+ETTGL+   D IIEI A      E++D   T    +VF+ PN          ++ 
Sbjct: 135 VVVDLETTGLEPTRDYIIEIAAAKYENNEIIDTYTTLVNPEVFIPPN-------ITNINH 187

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I ++ +KD P    +   F +F  +     +AHNA FD+ F+NA L  +     +P  II
Sbjct: 188 IDNDMVKDCPEIKEVLPGFMNFIGQ--LPLVAHNAPFDIKFLNANLALLGLYLNNP--II 243

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL I+R+      N      K Y + I  +  H AL D ++   +Y++           
Sbjct: 244 DTLPISRKLFSEIENHKLGTIKEY-LNIDVQDSHRALPDCYVCGQIYLE----------- 291

Query: 185 FKTNEDRFFKEEKKTVPNISL---LKRDKPLFTRITKEELDEHDK 226
           + T E     + KK + NI L   +  +K     I KE L +H+K
Sbjct: 292 YSTKE-----KNKKALANIKLHSDIGLNKEECYSIVKEILKKHNK 331


>gi|254556626|ref|YP_003063043.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1]
 gi|254045553|gb|ACT62346.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1]
          Length = 934

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 19/171 (11%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK-LHGITD 67
           V DIETTG   K+ DRII+IG      + K N+    F    N     P  ++ L GI++
Sbjct: 9   VVDIETTGTSVKDGDRIIQIGCA----FVKNNKIINTFATDVNPLTTVPAVIENLTGISN 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  P F  +    +     Q   ++AHN  FD+ FIN+ELQR+    L P + +DT+
Sbjct: 65  ARVRKAPPFDDLAGTVYSLL--QGTVFVAHNVNFDLPFINSELQRVGYPEL-PIQAVDTV 121

Query: 128 SIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           S+++   P++ +    DL+ L     + I H   H A  D+   + ++I +
Sbjct: 122 SLSQILLPTASSFRLRDLSHL-----LAIDHNHPHSADSDAIATAHLFITL 167


>gi|332366322|gb|EGJ44074.1| DNA polymerase III [Streptococcus sanguinis SK1059]
          Length = 267

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+   +  E +K
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56

Query: 62  -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P
Sbjct: 57  ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +LC    + IS  + H AL D+   + +++K+
Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165


>gi|296160037|ref|ZP_06842857.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
 gi|295889783|gb|EFG69581.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
          Length = 383

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 91/168 (54%), Gaps = 13/168 (7%)

Query: 10  IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67
           IVF D+ETTG  +   RI E+G VE+     +  +  V    + ++  P  ++ L GIT+
Sbjct: 15  IVFVDLETTGGSTAEHRITEVGVVEVGPAGVSRWSSLV----DPQQPIPSFIQQLTGITN 70

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  P+F +I    ++  N +   ++AHNA FD GF+  E +R+     DP  ++ T+
Sbjct: 71  AMVRGAPTFEAIAPALFERLNGKL--FVAHNASFDRGFLRGEFRRVGLA-FDPD-VLCTV 126

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++R   P+  R+ L++L +R+ +  S R  H AL D+ L+   + ++
Sbjct: 127 RLSRALFPAEKRHGLDALVERHTLVPSDR--HRALADADLIWQFWQRL 172


>gi|190149453|ref|YP_001967978.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307260640|ref|ZP_07542332.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|307262772|ref|ZP_07544399.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|189914584|gb|ACE60836.1| DNA polymerase III, epsilon subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306869717|gb|EFN01502.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306871917|gb|EFN03634.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 218

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 26/193 (13%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCPNG 52
           KN+ R    ++ D+ET GL+++ D ++E+ A+         L+   K +   Q F    G
Sbjct: 12  KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPF---EG 68

Query: 53  RKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG 104
              +P++LK +GI  D  L+     +    E +            Q A  +AHNA FD  
Sbjct: 69  ANINPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQA 128

Query: 105 FINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+ A ++RIN  +DP  P  + DT ++A   +   +  L   C+   I    +  H AL 
Sbjct: 129 FVQAAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAKIPFDDKQAHSALY 186

Query: 163 DSHLLSDVYIKMM 175
           D+   ++++  M+
Sbjct: 187 DTEKTTELFCAMV 199


>gi|212702995|ref|ZP_03311123.1| hypothetical protein DESPIG_01033 [Desulfovibrio piger ATCC 29098]
 gi|212673583|gb|EEB34066.1| hypothetical protein DESPIG_01033 [Desulfovibrio piger ATCC 29098]
          Length = 173

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D ET+G  + +     +G   + D + T+  + +   P+ R        +HG+T 
Sbjct: 5   RYVALDFETSGYAAHS--ACAVGLCRIEDGAVTDSFYSLIRPPSSRVLFTH---VHGLTW 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDT 126
             LKD P+F+ ++ +   F  E +   +AHNA FD   ++A  Q +    P  P   + T
Sbjct: 60  PLLKDAPTFTEVWPQLAAFM-EGSRAILAHNAGFDRRVLHASCQALGLVQPQLP--FLCT 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           L  ARR  P +   L+S+C  +GI + H   H A  D+   +++Y+++   G
Sbjct: 117 LKGARRSLPLASRALDSVCDYFGIPLDH---HHAGSDARACAEIYLRLHALG 165


>gi|291484662|dbj|BAI85737.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. natto BEST195]
          Length = 931

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 92/174 (52%), Gaps = 11/174 (6%)

Query: 5   NKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KL 62
           NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN  K+ P  + +L
Sbjct: 2   NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN--KSIPAFIEQL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI+++ ++++  F ++  E +   +   A ++AHN  FD+GF+  EL +     L    
Sbjct: 59  TGISNQMVENEQPFEAVAEEVFQLLD--GAYFVAHNIHFDLGFVKYELHKAGFQ-LPDCE 115

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++DT+ ++R   P      L  L +   + + H   H A  D+ +   ++++++
Sbjct: 116 VLDTVELSRIVFPGFEGYKLTELSEE--LQLRHDQPHRADSDAEVTGLIFLEIL 167


>gi|15673814|ref|NP_267989.1| DinG [Lactococcus lactis subsp. lactis Il1403]
 gi|12724861|gb|AAK05930.1|AE006413_6 ATP-dependent helicase DinG [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 794

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 94/177 (53%), Gaps = 18/177 (10%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           KN  R  V D+E T   S  ++II+IG V L++  +   TF   + P+     P   +L 
Sbjct: 2   KNMTRYAVVDLEATDAHSSENKIIQIGIV-LVEDGEIVETFSTEVNPH-EPLLPRISELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-----FINAELQRINKDPL 118
           G++D+ LK  P FS + ++  +     ++ ++AHNA+FD G     F+NA L+       
Sbjct: 60  GLSDKQLKTAPEFSEVAAKVRELLT--DSVFVAHNARFDYGLLEKSFLNAGLE------F 111

Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +    +DT+ +AR  +P+  +  L SL ++  + ++H   H A+ D++  +++ +K+
Sbjct: 112 NEMLRVDTVDLARVFYPTFEKYGLESLSEK--LDLAHDHPHAAVSDAYATAELLLKI 166


>gi|16079297|ref|NP_390121.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310156|ref|ZP_03592003.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. 168]
 gi|221314478|ref|ZP_03596283.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221319400|ref|ZP_03600694.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221323676|ref|ZP_03604970.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. SMY]
 gi|1706437|sp|P54394|DING_BACSU RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|1146243|gb|AAB38451.1| 22.4% identity with Escherichia coli DNA-damage inducible protein
           ...; putative [Bacillus subtilis subsp. subtilis str.
           168]
 gi|2634658|emb|CAB14156.1| damage inducible ATP-dependent helicase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 931

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 92/174 (52%), Gaps = 11/174 (6%)

Query: 5   NKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KL 62
           NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN  K+ P  + +L
Sbjct: 2   NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN--KSIPAFIEQL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI+++ ++++  F ++  E +   +   A ++AHN  FD+GF+  EL +     L    
Sbjct: 59  TGISNQMVENEQPFEAVAEEVFQLLD--GAYFVAHNIHFDLGFVKYELHKAGFQ-LPDCE 115

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++DT+ ++R   P      L  L +   + + H   H A  D+ +   ++++++
Sbjct: 116 VLDTVELSRIVFPGFEGYKLTELSEE--LQLRHDQPHRADSDAEVTGLIFLEIL 167


>gi|311896062|dbj|BAJ28470.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 617

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 15/196 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ET+GL ++ DR++ I  +           +   L P      P  + +HG+T E L
Sbjct: 21  LVDVETSGLVARRDRVLSIAVLTFAPDGTQTGEYTTLLDPG---CDPGPVHVHGLTAERL 77

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P+F  +        + +    +AHNA+FD  F+  E  R     L  +R + TL++ 
Sbjct: 78  RGAPAFEQVADRIGALLDGRV--MVAHNAQFDYDFLAHEFARARLH-LPVARRLCTLALN 134

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT-- 187
           RR  P      L SL   YG  +     H AL D+ +L+ ++   +   +++        
Sbjct: 135 RRVEPPVAGLSLASLAAYYG--VPQTRAHDALDDTRVLAGIFRSSLAEAARLGVPLPLVA 192

Query: 188 ----NEDRFFKEEKKT 199
                + RF  +  KT
Sbjct: 193 CPPRQDARFAPKPPKT 208


>gi|90410853|ref|ZP_01218868.1| ribonuclease T [Photobacterium profundum 3TCK]
 gi|90328484|gb|EAS44782.1| ribonuclease T [Photobacterium profundum 3TCK]
          Length = 223

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +SK D ++EI AV L +D   + K   T    + P  G     EAL+ +G
Sbjct: 20  VVIDVETAGFNSKTDALLEICAVTLQMDEDGWLKPASTIHFHVAPFEGAVLHKEALEFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFW-DFFNEQNAE------WIAHNAKFDVGFI--NAELQRI 113
           I D F  L+   S  +   E +     EQ A        +AHNA FD  F+   +E  R+
Sbjct: 80  IRDPFSPLRGAVSEETALKEIYKQIRKEQKAADCSRAIMVAHNANFDHSFVMEASERARL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   CK  G+   ++  H AL D+   ++++ +
Sbjct: 140 KRNPFHPFATFDTAALSGLAF--GQTVLAKACKTAGVAFDNKEAHSALYDTERTAELFCE 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|119718032|ref|YP_924997.1| exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
 gi|119538693|gb|ABL83310.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
          Length = 405

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 8/161 (4%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + D+ETTGL   K+DRI+EIG +E+ D     R +   + P  R   P    +HGIT   
Sbjct: 6   IIDLETTGLFPQKHDRIVEIGLIEVSDSGAIEREWATLVNPQ-RDVGPT--HIHGITARD 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+F  +          +    +AHNA+FD  F++ E +R +     P+  + T+ +
Sbjct: 63  VLDAPTFQEVAPYLIGSLAGRT--LVAHNARFDTQFLDYEFERASVGTRPPTPSLCTMQL 120

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +      +   L   C      + H  +H AL D+  ++ +
Sbjct: 121 SSSYLRGASRKLKDCC--VAANVPHADEHTALGDARAVAGL 159


>gi|321311709|ref|YP_004203996.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis BSn5]
 gi|320017983|gb|ADV92969.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis BSn5]
          Length = 931

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 92/174 (52%), Gaps = 11/174 (6%)

Query: 5   NKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KL 62
           NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN  K+ P  + +L
Sbjct: 2   NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN--KSIPAFIEQL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI+++ ++++  F ++  E +   +   A ++AHN  FD+GF+  EL +     L    
Sbjct: 59  TGISNQMVENEQPFEAVAEEVFQLLD--GAYFVAHNIHFDLGFVKYELHKAGFQ-LPDCE 115

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++DT+ ++R   P      L  L +   + + H   H A  D+ +   ++++++
Sbjct: 116 VLDTVELSRIVFPGFEGYKLTELSEE--LQLRHDQPHRADSDAEVTGLIFLEIL 167


>gi|312621985|ref|YP_004023598.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202452|gb|ADQ45779.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 1402

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTG DS+ D+IIEIGAV++ +     R F  F+ P G K      +L GI  + 
Sbjct: 391 VVVDIETTGFDSQRDKIIEIGAVKIENGQIIER-FSTFVDPEG-KIPVRISELTGIYQDM 448

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  +    EF  F     +  +AHNA+FD+GF+           +     IDTL +
Sbjct: 449 VDKAPKLNDAILEFEKF--ASGSILVAHNAQFDIGFLKKAYHECGI--IFDYTYIDTLEL 504

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +RR     S + LN + +   + + H   H A  D+   + ++  ++
Sbjct: 505 SRRLLTDLSSHKLNKVAEFLNVELKHH--HRADSDAETTAGIFTSLL 549


>gi|295100646|emb|CBK98191.1| DNA polymerase III catalytic subunit, PolC type [Faecalibacterium
           prausnitzii L2-6]
          Length = 1417

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 16/194 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD ETTGLD   + + EIGAV ++   +    F  F+ P G+  + +  +L GIT+E +
Sbjct: 399 VFDTETTGLDPGVEYLTEIGAV-IVRNGEVVEEFDTFVKP-GKPITSKITELTGITNEMV 456

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            D PS +     F DF + +    + HNA  FD+ F+ A  +R   +  +P+  IDTL++
Sbjct: 457 ADAPSEAEALKAFLDFVDGRIL--VGHNAHSFDIRFLRAAAKRSGIE-FEPT-YIDTLTM 512

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH--------LLSDVYIKMMVGGSQI 181
           A+  +P   N       ++ + +     H A  DS         +L D+  K +   S I
Sbjct: 513 AQAMYPGLHNYKQGTINKH-LELPAYEAHRACEDSAALGRIFCVMLKDLEEKQVTAVSGI 571

Query: 182 NFGFKTNEDRFFKE 195
           N G   N +   K+
Sbjct: 572 NTGLGGNREVLKKK 585


>gi|329569951|gb|EGG51706.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Enterococcus faecalis TX1467]
          Length = 240

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V L+   K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCV-LVQDGKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|254517741|ref|ZP_05129797.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium
           sp. 7_2_43FAA]
 gi|226911490|gb|EEH96691.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium
           sp. 7_2_43FAA]
          Length = 188

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 7/133 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I+  K R I FD+ETTGL   ND+IIE+GAV L +  +  + +  +L          A  
Sbjct: 21  IKNLKNRYIAFDVETTGLSPINDKIIEVGAV-LFENGEIIKKYS-YLVNLEVVIPASATA 78

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRINKDPL 118
           ++ IT+E ++D     ++++E   F ++   E     AHNA FD+ FI+  L R+  D  
Sbjct: 79  VNHITNEMIQDATKEDTVYAELVKFLDDALKEQTVICAHNATFDMKFISETLMRLGYDG- 137

Query: 119 DPSRIIDTLSIAR 131
                +DTLS++R
Sbjct: 138 -KIHYVDTLSLSR 149


>gi|332667256|ref|YP_004450044.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM
           1100]
 gi|332336070|gb|AEE53171.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 282

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 11/163 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FDIE TGL+   DRI++I  ++     +  +   + + P G   S EA+ +HGI  + + 
Sbjct: 12  FDIEATGLNVVRDRIVQIAIIKYFKDGREPQELSLMINP-GIPISLEAILVHGIQPKDVA 70

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
           +KP+F  +  + WDF    NA+   +N+ +FD+  +  E  R+  +  +   R ID   I
Sbjct: 71  NKPTFQQLAQKIWDFIG--NADLAGYNSNRFDIPMLMEEFARVGMEFDVTKRRSIDVQRI 128

Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +  P + +  L   C++      H   H A+ D     DV+
Sbjct: 129 FYKMEPRTLKAALKFYCEK-----EHEDAHDAMADVRATIDVF 166


>gi|325694226|gb|EGD36142.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK150]
          Length = 814

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+   +  E +K
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56

Query: 62  -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P
Sbjct: 57  ELTGLNDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +LC    + IS  + H AL D+   + +++K+
Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165


>gi|293390535|ref|ZP_06634869.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951069|gb|EFE01188.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 217

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 26/195 (13%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV--------ELLDYSKTNRTFQVFLCP 50
           I K++ R    +V D+ET GL++K D ++E+ A+         LL   K +   Q F   
Sbjct: 12  ILKHRFRGYLPVVIDVETAGLNAKTDALLELAAITLKMDENGNLLPDQKCHFHIQPF--- 68

Query: 51  NGRKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFD 102
            G    PE+LK +GI  D  L+   S +   SE +    +       Q +  +AHNA FD
Sbjct: 69  EGANIDPESLKFNGIDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNAAFD 128

Query: 103 VGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
            GF+ A  QR+N  ++P  P    DT +++       +  L   C+   I    +  H A
Sbjct: 129 QGFLMAAAQRMNAKRNPFHPFSTFDTATLSGFMF--GQTVLVKACQAAKIPFDSQQAHSA 186

Query: 161 LLDSHLLSDVYIKMM 175
           L D+   ++++  M+
Sbjct: 187 LYDTERTAELFCYMV 201


>gi|206603443|gb|EDZ39923.1| DNA polymerase III, epsilon subunit [Leptospirillum sp. Group II
           '5-way CG']
          Length = 265

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 86/176 (48%), Gaps = 19/176 (10%)

Query: 7   MRKIVFDIETTGL--DSKNDRIIEIG--AVELLDYSKTNRTF--QVFLCPNGRKNSPEAL 60
           M+    D+ETTGL  DS+  RIIE+G    E     + N T    V + P+         
Sbjct: 1   MKITFLDVETTGLLRDSRA-RIIELGFSTWENGKLLRKNSTLIKSVDVVPDNIS------ 53

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K++GIT E LKD P F  ++    + F  Q +  +AHN  FDVG +N EL   N+ PL  
Sbjct: 54  KINGITTEMLKDAPGFEDVWKSIKEDF--QGSILVAHNLAFDVGMVNRELILANRIPLG- 110

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +  IDTL ++R+  P  S   L  + K  GI   + S H A+ D   L  +   ++
Sbjct: 111 NMGIDTLPLSRKMLPELSSYRLGEIAKHMGIL--NESPHRAMGDLETLEKILSNLL 164


>gi|330444392|ref|YP_004377378.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58]
 gi|328807502|gb|AEB41675.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58]
          Length = 232

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           I +D ETTG     DR+IEI A      S T  +F  ++  N     PE + K+HGIT  
Sbjct: 5   IFYDTETTGTQIDKDRVIEIAAYN----SSTKESFVTYV--NPEIPVPEDSSKIHGITTA 58

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+F   +  F  F    +     +N  FD+  +  E QR + +PL+  R ID+L 
Sbjct: 59  MVSSAPTFPEAYHNFKQFCGSASILVAHNNDNFDLPLLQKECQRYSLEPLN-LRTIDSLK 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            A++  P   +++L  L + YG   +    H AL D   L  V+   +VG
Sbjct: 118 WAKKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLHKVF-SALVG 164


>gi|239928032|ref|ZP_04684985.1| DNA polymerase III [Streptomyces ghanaensis ATCC 14672]
 gi|291436367|ref|ZP_06575757.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291339262|gb|EFE66218.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 631

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 9/161 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ET+GL ++ DR++ +  + +    +    F   L P      P  +++HG+T E L
Sbjct: 22  LVDVETSGLMARRDRVLSVAVITIGPDGEQTGEFSTLLNPG---CDPGPVEVHGLTVERL 78

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P+F  +          Q    +AHNA+FD  F+  E  R     L  S+ + TL++ 
Sbjct: 79  QGAPTFDQVAGRIGAML--QGRVLVAHNAQFDYDFLAHEFARARMW-LPVSQRLCTLALN 135

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           R+  P + +  L +L   YG  +S +  H AL D+ +L+ +
Sbjct: 136 RQVDPPTDDMKLGTLAAHYG--VSRQRAHDALDDTRVLAGI 174


>gi|239831040|ref|ZP_04679369.1| exonuclease [Ochrobactrum intermedium LMG 3301]
 gi|239823307|gb|EEQ94875.1| exonuclease [Ochrobactrum intermedium LMG 3301]
          Length = 214

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 7/172 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEAL 60
           +   K R IV D ETTGL    DRI+ IGAV++      +++  +   P  RK+S P+A 
Sbjct: 9   VHTRKKRVIVVDTETTGL-LPYDRIVTIGAVKIEGDDFLHQSLHLIFDP--RKDSHPQAE 65

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HG  +   + +  FS + +    +F+  + E +AHNA FD+ ++  E ++   D L P
Sbjct: 66  AVHGYDNWMTRYQDLFSDLAAPIRKWFDWAD-EIVAHNADFDMRYVQREFRKAEVDML-P 123

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             +  T+  +R         L+    R G++   + +HGAL D++L + +Y+
Sbjct: 124 HPVFCTMERSREIWSGQSAKLDDCLARIGLSRIGK-RHGALEDAYLTAGLYL 174


>gi|288922213|ref|ZP_06416412.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f]
 gi|288346447|gb|EFC80777.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f]
          Length = 565

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 98/238 (41%), Gaps = 47/238 (19%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHG 64
           +V D+ETTG       I EIGAV++       R  QV      L        P    L G
Sbjct: 30  VVVDLETTGGSPATSEITEIGAVKV-------RGGQVLGEMSSLVRASTPIPPVVSVLTG 82

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD  L   P+   +   F +F   + A  +AHNA FD+GF+ A  Q     P+     +
Sbjct: 83  ITDSMLATAPTLDEVVPTFLEF--SRGAVLVAHNAAFDLGFLRAAAQACGY-PVPAWEHL 139

Query: 125 DTLSIARR-----KHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKMMVG 177
           DT+ IARR     + P+ R  L SL   +G     +HR+   A     +L  ++ ++   
Sbjct: 140 DTVLIARRVVTRDEAPNCR--LASLATLFGSPTEPNHRALADARATVAVLHGLFERLG-- 195

Query: 178 GSQINFGFKTNED---------------RFFKEEKKTVPNISLLK--RDKPLFTRITK 218
               N G  T ED               R   ++  T P + + +   D+PL+   ++
Sbjct: 196 ----NLGVTTLEDVREYSARVSPAQRRKRHLADDLPTGPGVYVFRDGADRPLYVGTSR 249


>gi|240947949|ref|ZP_04752376.1| ribonuclease T [Actinobacillus minor NM305]
 gi|240297743|gb|EER48202.1| ribonuclease T [Actinobacillus minor NM305]
          Length = 216

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 31/204 (15%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCPNG 52
           KN+ R    ++ D+ET GL+++ D ++EI A+         L+   K +   Q F    G
Sbjct: 12  KNRFRGYLPVIIDVETAGLNAQTDALLEIAAITVKMDENGYLVPDQKCHYHIQPF---EG 68

Query: 53  RKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG 104
              + ++LK +GI  D  L+     +    E +    +       Q A  +AHNA FD G
Sbjct: 69  ANINQDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRKAMKEQGCQRAVIVAHNAAFDQG 128

Query: 105 FINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+ A  +RIN  +DP  P  + DT ++A   +   +  L   C+   I    +  H AL 
Sbjct: 129 FLQAAAKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQIANIAFDGKQAHSALY 186

Query: 163 DSHLLSDVYIKMM-----VGGSQI 181
           D+   ++++  M+     +GG  I
Sbjct: 187 DTEKTTELFCTMVNRLKDLGGYPI 210


>gi|78777649|ref|YP_393964.1| DNA polymerase III subunit epsilon [Sulfurimonas denitrificans DSM
           1251]
 gi|78498189|gb|ABB44729.1| Exonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 205

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 15/173 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGL+ K D I+ IGAV++ D    T++TF+VFL  N ++ S  ++K+HGI   
Sbjct: 35  VVFDTETTGLNPKVDEILSIGAVKIKDNRVLTSQTFEVFL-QNSKEISSNSIKIHGIRPF 93

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRIID 125
            LKD  +      EF +F   +    I +  +FDV  IN    R  K  L    P+++I+
Sbjct: 94  DLKDAKTTKEGIVEFLNFIGSR--PLIGYYLEFDVAMIN----RYTKPLLGINLPNKMIE 147

Query: 126 TLSIARRKH----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              I   K     P    DL         +I +   H A+ D+ + + +Y+K+
Sbjct: 148 VSEIYFDKTISLIPQGNIDLRFDTILKNCSIPNMGAHNAVNDAIMTAMIYLKL 200


>gi|320160945|ref|YP_004174169.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea
           thermophila UNI-1]
 gi|319994798|dbj|BAJ63569.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea
           thermophila UNI-1]
          Length = 934

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 15/174 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +  DIETTGLD + D IIEIGAV   +  +    +   + P   KN P  + +L GIT++
Sbjct: 8   VAIDIETTGLDPEKDCIIEIGAVRFSN-RRVEAEWSSLIKPT--KNIPSFITQLTGITND 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+   +  +   F    N   + HN +FD+ F+  +    N      + +IDT  
Sbjct: 65  MVRKAPTIQDVIGDLAHFVG--NCPIVGHNIRFDLSFLQKQHILWN------NHVIDTYE 116

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +A    P+ SR +L  L +  GI +   + H AL D+ +   ++I ++   S++
Sbjct: 117 LASVLLPTASRYNLGVLAQSLGILLP--ATHRALDDARVTHALFIALLEKASEL 168


>gi|149183101|ref|ZP_01861552.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. SG-1]
 gi|148849178|gb|EDL63377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. SG-1]
          Length = 933

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 11/163 (6%)

Query: 10  IVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D+ETTG    K D+II++ A+ ++       ++  F+ P G        +L GI D 
Sbjct: 7   VVVDLETTGNSPKKGDKIIQLAAM-VVQGGAVVDSYTTFVNP-GITIPSFIEELTGIHDG 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127
            +KD P FS I  +  +  +   A + AHN +FD+GF+ AEL+    +P   PS   DT+
Sbjct: 65  MVKDAPEFSEIAPKVLELLD--GAVFCAHNVQFDLGFLQAELEEAGYNPFSGPS--FDTV 120

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167
            +A+   P++ +  L  L  R+ +  S  H++   AL+ + LL
Sbjct: 121 ELAKITLPTADSYKLTELSDRFSLNHSRPHQADSDALVTAELL 163


>gi|240168250|ref|ZP_04746909.1| hypothetical protein MkanA1_02987 [Mycobacterium kansasii ATCC
           12478]
          Length = 680

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 99/197 (50%), Gaps = 25/197 (12%)

Query: 21  SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80
           +  D I EIGAV++   +     F   + P  R   P+ ++L GIT   ++D P  S++ 
Sbjct: 75  APPDAITEIGAVKVRGGTVLAE-FATLVDPQ-RSIPPQIVQLTGITTAMVRDAPVISAVL 132

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR-----KHP 135
             F++F    N+ ++AHNA FD+GF+ A  ++ +     P +++ T+ +ARR     + P
Sbjct: 133 PMFFEFAG--NSVFVAHNAGFDIGFLRAAARQCDITWPRP-KVLCTVRLARRVLSREEAP 189

Query: 136 SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFGFKTNEDRFF 193
           S R  L  L + +  +++ +  H AL D+    DV   ++  VG    N G  T     F
Sbjct: 190 SVR--LAELARLF--SVATQPTHRALDDARATVDVLHALIERVG----NQGVHT-----F 236

Query: 194 KEEKKTVPNISLLKRDK 210
            + +  +PN++  +R K
Sbjct: 237 ADLRSYLPNVTPAQRRK 253


>gi|269796817|ref|YP_003316272.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
 gi|269099002|gb|ACZ23438.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
          Length = 611

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 9/161 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+GL   + R++++   ++       R++   L P      P  + +HG+T E L
Sbjct: 24  VVDVETSGLSPTHHRVLQVAVTQVEPDGALGRSWSSLLDPG---VDPGPVHVHGLTRERL 80

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P +  +     +   ++    +AHNA+FD GF+ AE  R  + PL   R + TL+++
Sbjct: 81  AGAPQYQDVAGTLDELVRDRV--LVAHNARFDWGFLAAESDR-ARAPLSVDRRLCTLALS 137

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           RR   P S   L ++   +G  +  R  H A  D  +L +V
Sbjct: 138 RRLDLPVSDLRLATVAAHWG--VQQRRAHDAEDDVRVLVEV 176


>gi|152979979|ref|YP_001352248.1| hypothetical protein mma_0558 [Janthinobacterium sp. Marseille]
 gi|151280056|gb|ABR88466.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 195

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 18/172 (10%)

Query: 9   KIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGIT 66
           K++F D+ETTG +  NDRI EIG V +      +R +  F+ P   +  PE ++ L GI+
Sbjct: 6   KLIFVDLETTGANLVNDRITEIGIVAVDPDGCIDR-WSTFVNPG--RPIPEFIQGLTGIS 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSR 122
           DE ++  P F ++     +    Q+  +IAHNA+FD GF++    R    +N + L   +
Sbjct: 63  DEMVESAPMFETLADTVRERL--QDGLFIAHNARFDYGFLHHAFVRSGHVLNAEMLCTVK 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +   L  A +KH     +L+SL  R+ +     ++H AL D+ LL  ++ K+
Sbjct: 121 LSRALFPAEKKH-----NLDSLIARHDLI--PEARHRALADADLLWQLWRKL 165


>gi|168216491|ref|ZP_02642116.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens NCTC 8239]
 gi|182381517|gb|EDT78996.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens NCTC 8239]
          Length = 870

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+E+TG+D   D II+I A++L    +    F+ FL    +K   ++  +HG +DE 
Sbjct: 505 IVFDVESTGVDVIEDEIIQIAAIKLNKKGEVVDKFEKFL--KNKKPVKDSYYVHGFSDEM 562

Query: 70  L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L K       +  EF ++   + +  + HN ++D+  + +EL+R N          DTL 
Sbjct: 563 LQKIGEDKEKVLKEFVEY--SKGSIIVGHNVQYDINILCSELERSNLGKPKFKTFYDTLD 620

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163
           I RR +P + N  L +L   Y     H+  H A+ D
Sbjct: 621 IYRRFYPGNINYKLENLSNVYD--TKHKPSHDAMDD 654


>gi|15643342|ref|NP_228386.1| DNA polymerase III PolC [Thermotoga maritima MSB8]
 gi|6225287|sp|Q9ZHF6|DPO3_THEMA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|4981093|gb|AAD35661.1|AE001732_6 DNA polymerase III, alpha subunit [Thermotoga maritima MSB8]
 gi|3930535|gb|AAC80438.1| DNA polymerase III [Thermotoga maritima]
          Length = 1367

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 92/167 (55%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGLD + D IIEIGAV+ +   +    +   + P+ R+ S ++ ++ GIT E 
Sbjct: 359 VVLDFETTGLDPQVDEIIEIGAVK-IQGGQIVDEYHTLIKPS-REISRKSSEITGITQEM 416

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128
           L++K S   +  EF  F   +++  +AHNA FD  F+   ++++    LD  R  IDTL+
Sbjct: 417 LENKRSIEEVLPEFLGFL--EDSIIVAHNANFDYRFLRLWIKKVMG--LDWERPYIDTLA 472

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+         L+S+ ++ G  +     H AL D+ + + V+++ +
Sbjct: 473 LAKSLLKLRSYSLDSVVEKLG--LGPFRHHRALDDARVTAQVFLRFV 517


>gi|111018828|ref|YP_701800.1| DNA polymerase III [Rhodococcus jostii RHA1]
 gi|110818358|gb|ABG93642.1| probable DNA polymerase III [Rhodococcus jostii RHA1]
          Length = 649

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+ET+GL S   R++ + A+ L +     R     L P      P  + +H +T 
Sbjct: 70  RWVVVDVETSGLRSSTHRVLSVAALALREDGSVERELVTLLNPG---CDPGPVHIHNLTP 126

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P F  + ++  +  + +    +AHNA FD GF++AE++R         R+  TL
Sbjct: 127 QRLAGAPRFEEVANDLLELLDGRT--LVAHNASFDYGFLDAEVRRAGMTMPTRQRLC-TL 183

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +++RR      N  L++L   +   +     H A  D+ +L++V+
Sbjct: 184 ALSRRLEIDVPNHKLSTLAAHW--KVRQNRAHDAYDDALVLTEVF 226


>gi|330469366|ref|YP_004407109.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
           AB-18-032]
 gi|328812337|gb|AEB46509.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
           AB-18-032]
          Length = 584

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 16/180 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG       I EIGAV++    +        + P G    P    L GIT+  
Sbjct: 33  VVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITEAM 90

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   PS   +   F +F +  +A  +AHNA +DVGF+ A   R      +P R++DT ++
Sbjct: 91  LLPAPSIEQVLPSFLEFVS--DAVLVAHNAPYDVGFLKAACARHGYRWPNP-RVLDTAAL 147

Query: 130 ARR---KHPSSRNDLNSLCK--RYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQIN 182
           ARR   +       L +L    R   T +HR    AL D+    DV   ++  +GG +++
Sbjct: 148 ARRVLLRDEVPNRKLGTLAAYFRAATTPTHR----ALDDARATVDVLHGLIGRLGGHRVD 203


>gi|268611881|ref|ZP_06145608.1| hypothetical protein RflaF_20541 [Ruminococcus flavefaciens FD-1]
          Length = 176

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 9/173 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ET   +  NDR+  IG   + D +K    +   + P    +S    +L GI  E 
Sbjct: 5   IVFDVETP--NHANDRMSAIGITAVKD-NKIVANYFSLVDPETHFDSFNT-QLTGIDAEK 60

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P+F+ ++ +     ++     +AHNA FD+  + + L+         +  + T+ I
Sbjct: 61  VKDAPNFAELWKKIEPIMSK--GILVAHNAVFDMSVLRSCLRSYGITWKPTAEYLCTVQI 118

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            RR  P+ +++LN +C  YGI + H   H A  D+H  +++ ++ M  G  ++
Sbjct: 119 GRRVLPNMKHNLNVMCDHYGIALDH---HQADSDAHACAEILLRYMESGVDVS 168


>gi|149911269|ref|ZP_01899891.1| exonuclease [Moritella sp. PE36]
 gi|149805654|gb|EDM65654.1| exonuclease [Moritella sp. PE36]
          Length = 138

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 57/107 (53%), Gaps = 5/107 (4%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I+ D ETTGL     DR IEIGAV++ D   T R FQ  + P GR+ S        IT++
Sbjct: 9   IILDFETTGLSPDMGDRAIEIGAVKIEDGEITGR-FQELMYP-GRRVSSFIADYTSITND 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            L D      +   F DF   Q    +AHNA FD  F++AEL RI++
Sbjct: 67  MLVDAAPCEEVMHRFADFI--QGYNLVAHNASFDKRFLDAELTRIDR 111


>gi|145580424|pdb|2P1J|A Chain A, Crystal Structure Of A Polc-Type Dna Polymerase Iii
           Exonuclease Domain From Thermotoga Maritima
 gi|145580425|pdb|2P1J|B Chain B, Crystal Structure Of A Polc-Type Dna Polymerase Iii
           Exonuclease Domain From Thermotoga Maritima
          Length = 186

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 92/167 (55%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGLD + D IIEIGAV++      +  +   + P+ R+ S ++ ++ GIT E 
Sbjct: 15  VVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDE-YHTLIKPS-REISRKSSEITGITQEM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128
           L++K S   +  EF  F   +++  +AHNA FD  F+   ++++    LD  R  IDTL+
Sbjct: 73  LENKRSIEEVLPEFLGFL--EDSIIVAHNANFDYRFLRLWIKKVMG--LDWERPYIDTLA 128

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+         L+S+ ++ G  +     H AL D+ + + V+++ +
Sbjct: 129 LAKSLLKLRSYSLDSVVEKLG--LGPFRHHRALDDARVTAQVFLRFV 173


>gi|332359593|gb|EGJ37411.1| DNA polymerase III [Streptococcus sanguinis SK49]
          Length = 814

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+   +  E +K
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56

Query: 62  -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P
Sbjct: 57  ELTGLNDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +LC    + IS  + H AL D+   + +++K+
Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165


>gi|118619457|ref|YP_907789.1| DNA polymerase III subunit epsilon [Mycobacterium ulcerans Agy99]
 gi|118571567|gb|ABL06318.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium ulcerans
           Agy99]
          Length = 329

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G    + R+I + A+ L        +    L P G    P    +HG+T   L
Sbjct: 18  VVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGG---DPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
           +D+P F+ I  +  +    +    +AHN  FD  F+ AE +  + + P+D   ++ T+ +
Sbjct: 75  EDQPQFADIVGDLTELLRGRT--LVAHNVAFDYSFLAAEAELTDAELPVD--SVMCTVEL 130

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR      N  L +L   +G+T      H A  D+ +LS +    +
Sbjct: 131 ARRLELGIDNLRLETLAAHWGVT--QERPHDAFDDALVLSGILAPAL 175


>gi|281492444|ref|YP_003354424.1| ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
           [Lactococcus lactis subsp. lactis KF147]
 gi|281376108|gb|ADA65599.1| ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit
           [Lactococcus lactis subsp. lactis KF147]
          Length = 794

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 93/177 (52%), Gaps = 18/177 (10%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           KN  R  V D+E T   S  ++II+IG V L++  +   TF   + P+     P   +L 
Sbjct: 2   KNMTRYAVVDLEATDAHSSENKIIQIGIV-LVEDGEIVETFSTEVNPH-EPLLPRISELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-----FINAELQRINKDPL 118
           G++D+ LK  P FS +  +  +     ++ ++AHNA+FD G     F+NA L+       
Sbjct: 60  GLSDKQLKTAPEFSEVAGKVRELLT--DSVFVAHNARFDYGLLEKSFLNAGLE------F 111

Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +    +DT+ +AR  +P+  +  L SL ++  + ++H   H A+ D++  +++ +K+
Sbjct: 112 NEMLRVDTVDLARVFYPTFEKYGLESLSEK--LDLAHDHPHAAVSDAYATAELLLKI 166


>gi|227495992|ref|ZP_03926303.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM
           15434]
 gi|226834480|gb|EEH66863.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM
           15434]
          Length = 547

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG    +  I EIGAV +    +        + P GR    +   L GIT+  
Sbjct: 32  VVVDLETTGAGPGSHTITEIGAVRVRG-GQVEDELSTLVNP-GRAIPAQITVLTGITNAM 89

Query: 70  LKDKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +   P        F  W    E+    +AHNA+FDVG +    + +  D  +P R++DTL
Sbjct: 90  VAGAPPVPEALERFLQWARLWEEETVLVAHNARFDVGHLRGAARALELDWHEP-RVLDTL 148

Query: 128 SIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++ARR    S    + L +L    G     R  H AL D+    DV
Sbjct: 149 ALARRAWTRSEVPNHRLATLASFVGSPT--RPTHRALDDARATVDV 192


>gi|303246654|ref|ZP_07332932.1| DNA polymerase III, epsilon subunit [Desulfovibrio fructosovorans
           JJ]
 gi|302491994|gb|EFL51872.1| DNA polymerase III, epsilon subunit [Desulfovibrio fructosovorans
           JJ]
          Length = 240

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 20/179 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D E TG D +   ++ IGAV L   +     +F   + P+ R    +A  +HG+TD 
Sbjct: 44  VVVDTELTGFDPRRHAMVAIGAVRLRGLTLLPGESFFSLVRPS-RDVPRDASLIHGLTDA 102

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P  +   + F DF     A  + H+ + D+ FINA  +R     L  +  IDTL 
Sbjct: 103 ALADAPETAETLAAFLDFLGP--AIIVGHHVELDMAFINAASRRYFGGELA-APCIDTLR 159

Query: 129 IA------RRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +A      R+     +        DL SLC+RYG+     + H AL D++  + +++ +
Sbjct: 160 LALTYEEKRQMGQGGQGDFERLEFDLASLCRRYGLPPF--AAHDALGDAYGAAYLFLYL 216


>gi|269956792|ref|YP_003326581.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305473|gb|ACZ31023.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 584

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 14/171 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG  + +  I EIGAV++         FQ  + P GR+      +L GIT   
Sbjct: 34  VVVDLETTGTRTTDSGITEIGAVKVRGGEVLGE-FQSLVNP-GREVPAFVARLTGITTAM 91

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   PS   +   F ++ +  +   +AHNA FDVGF+ A    +   P     ++DT+ +
Sbjct: 92  VSTAPSIDLVLPSFLEWAH--DCVLVAHNAPFDVGFLKAAAAGLGY-PWPGFPVVDTVPL 148

Query: 130 ARRKHP---SSRNDLNSLCK--RYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR  P   +  + L +L    R  +T  HR    AL D+    DV   ++
Sbjct: 149 ARRVVPKDEAPNHKLATLAHLFRARVTPEHR----ALADARATVDVLHGLL 195


>gi|125717716|ref|YP_001034849.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit
           [Streptococcus sanguinis SK36]
 gi|125497633|gb|ABN44299.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit,
           putative [Streptococcus sanguinis SK36]
          Length = 814

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 94/175 (53%), Gaps = 12/175 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+  ++  E +K
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH--EDLDEHIK 56

Query: 62  -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P
Sbjct: 57  ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +LC    + IS  + H AL D+   + +++K+
Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165


>gi|331091091|ref|ZP_08339933.1| hypothetical protein HMPREF9477_00576 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405313|gb|EGG84849.1| hypothetical protein HMPREF9477_00576 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 236

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 77/165 (46%), Gaps = 11/165 (6%)

Query: 7   MRK--IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           MRK  I FD+ETTGL  + D IIEIGAV++ +    +R F  FL P     S     L G
Sbjct: 1   MRKTYISFDLETTGLSEEKDYIIEIGAVKVNNGKVVDR-FARFLKP-PISISNTITNLTG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD+ +K+         +F  F +      + HN  FD  F+     R           I
Sbjct: 59  ITDDMVKNAGDTQETIKDFIKFCD--GYFLLGHNIMFDYKFMKTYAARFGLHF--EKEGI 114

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGIT--ISHRSKHGALLDSHL 166
           DTL IAR+ H +     L SLC  Y I    +HR+ H AL  + L
Sbjct: 115 DTLKIARKVHKNLESKSLESLCTYYNIVNASAHRAYHDALATAKL 159


>gi|227544617|ref|ZP_03974666.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri CF48-3A]
 gi|300910253|ref|ZP_07127713.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
 gi|227185400|gb|EEI65471.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri CF48-3A]
 gi|300892901|gb|EFK86261.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
          Length = 954

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 19/167 (11%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D+ETTG + +  DRII+IG V + D    N  F+  + P  R+  P ++ +L GI D+
Sbjct: 21  VVDLETTGTNVNHGDRIIQIGCVLVQDGEIMNH-FETKINP--REKIPRSIVQLTGIEDK 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127
            ++  P F  I    +    E    ++AHN  FD  F+NAEL+R     L  P+  IDT+
Sbjct: 78  DVRKAPLFEDIAGTIYSLLAE--TTFVAHNVNFDFPFLNAELERAGYPSLSIPA--IDTV 133

Query: 128 SIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++++   P++++    DL S      + I H   H A+ D+   +D+
Sbjct: 134 TLSQILLPTAKSFRLRDLTS-----SLHIEHDHPHSAVSDAEATADL 175


>gi|324990933|gb|EGC22868.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK353]
          Length = 814

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S   +II+IG V L++     +T++  + P+  ++  E +K
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-GAKIIQIGIV-LIENGIITKTYETDVNPH--EDLDEHIK 56

Query: 62  -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P
Sbjct: 57  ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +LC    + IS  + H AL D+   + +++K+
Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165


>gi|169334141|ref|ZP_02861334.1| hypothetical protein ANASTE_00535 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258858|gb|EDS72824.1| hypothetical protein ANASTE_00535 [Anaerofustis stercorihominis DSM
           17244]
          Length = 204

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 6/157 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTGL+   + IIE+GAV++ D  K    F  F+ P     SPE  KL GI +  +
Sbjct: 26  VIDIETTGLNPDENEIIEVGAVKVRD-RKIVDEFSSFVSPKKDIISPEIRKLTGIDEAMI 84

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +       +   F +F + +    + HN  FD+ F+    +R + D    +  +D L I+
Sbjct: 85  EGADQIEDVIPRFNEFIDGEI--LLGHNVNFDINFLYDNYERYS-DFYLSNDYVDLLKIS 141

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGA-LLDSH 165
           R+  P   N  L ++ K+ GI +  + +  +  +D+H
Sbjct: 142 RKLSPEFENHKLETVLKKLGIKVDQQHRAVSDCIDAH 178


>gi|125549801|gb|EAY95623.1| hypothetical protein OsI_17478 [Oryza sativa Indica Group]
          Length = 260

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 22/180 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI---T 66
           +VFD+ETTG   K+ RI+E    +L      N TF+  + P   +  P+ ++ H I   T
Sbjct: 63  LVFDLETTGYFHKDHRIVEFALCDL--SGGKNSTFETLVNPE--RTVPDYVQ-HLIKIGT 117

Query: 67  DEFLKDK-PSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLD 119
           D   +   P FS +      F   + A      W+AHNAK FD  F+  E  R +  PL 
Sbjct: 118 DLVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSA-PLP 176

Query: 120 PSRI-IDTLSIARRKHPSS----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +  DTL +A++   +     R  L +L + YGI +SH   H A+ D  +LS V+ KM
Sbjct: 177 ADWLFFDTLLLAKKMVKAEGKKRRTSLEALREHYGI-VSHDDAHRAMRDVMILSQVFQKM 235


>gi|242041211|ref|XP_002468000.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor]
 gi|241921854|gb|EER94998.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor]
          Length = 583

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 19/178 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG   + DRIIE    +L+     N TFQ  + P     +     +HGI++  
Sbjct: 384 LVFDIETTGFSRREDRIIEFAVRDLM--GGKNSTFQTLINPEKEVRNA---YVHGISNSM 438

Query: 70  L--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121
           L   D P F  +      +   +  +     W+AHN + FDV F+  E +R   +     
Sbjct: 439 LCRPDVPRFGELVPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLIFEFRRCKLEMPGDW 498

Query: 122 RIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DTL IAR+   S  + L+S     L +RY I ++  S H A+ D   L  V  K+
Sbjct: 499 LFVDTLPIARQLVDSDGSKLSSVSLKNLRERYNIPLTG-SAHRAMQDVTTLCYVLQKL 555


>gi|118443832|ref|YP_878213.1| DNA polymerase III PolC [Clostridium novyi NT]
 gi|118134288|gb|ABK61332.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           novyi NT]
          Length = 1444

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 88/164 (53%), Gaps = 9/164 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG  S+ D+IIE GAV++ + +  + +F  F+ P   K   +  +L  IT++ 
Sbjct: 432 VVFDLETTGFSSQYDKIIEFGAVKIKNGNIID-SFSAFVNPE-IKIPYKITELTSITNDD 489

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD  +   +  +F  F   +    +AHN+ FD+ FI    + +N +      ++DT+ +
Sbjct: 490 VKDAETIDKVLPKFIKF--AEGTVLVAHNSNFDMSFIRKNCKDLNIEC--NYTVMDTIPL 545

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           A+   P   R  LN++ K  G+++ +   H A+ D+    D+ +
Sbjct: 546 AKFLFPELKRYKLNTIAKHLGVSLENH--HRAVDDAKATGDILV 587


>gi|149190247|ref|ZP_01868521.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
 gi|148835854|gb|EDL52817.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
          Length = 144

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 78/145 (53%), Gaps = 9/145 (6%)

Query: 99  AKFDVGFINAELQRINKD---PLDPSRIIDTLSIARR-KHPSSRNDLNSLCKRYGITISH 154
           A FDVGF++ E ++++          ++ DTL++A+R  +  +R +L+SL K Y I  S 
Sbjct: 1   APFDVGFMDYEFEKLDASIGKTEQYCKVTDTLAMAKRMANMPARKNLDSLAKHYTIDTSA 60

Query: 155 RSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214
           R  HGALLD+ +L+DVY+ M   G Q +  F   +    +   +T+  ++  ++   +  
Sbjct: 61  RVLHGALLDAEILADVYLAMT--GGQTSMQFNAGQSDGDESGGETIKRLTTGRKSLKIL- 117

Query: 215 RITKEELDEHDKTIQTL--GKNAIW 237
             + +E++ H+  +  +  G + +W
Sbjct: 118 HASADEIEAHNSRLDIVEKGGSCLW 142


>gi|319939450|ref|ZP_08013810.1| DNA polymerase III [Streptococcus anginosus 1_2_62CV]
 gi|319811436|gb|EFW07731.1| DNA polymerase III [Streptococcus anginosus 1_2_62CV]
          Length = 819

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 94/174 (54%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + + K +  V D+E T   S N +II++G V L++  +  +T++  + P+ + +S    +
Sbjct: 1   MTQEKRKYAVVDLEATS-ASSNAKIIQVGIV-LIENGQIVKTYETDVNPHEKLDS-HICQ 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L+  P FS +  E ++    ++A ++AHN KFD   +   L     + + P 
Sbjct: 58  LTGLTDKRLRRAPDFSQVAREIYELI--EDAIFVAHNVKFDANLLAEALFWEGFELVTPR 115

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+   P+  + +L  LC++  I + H   H AL D+   + +++K+
Sbjct: 116 --VDTVELAQVFFPTFEKYNLGILCEQLDIPLKH--AHTALADASATATLFLKI 165


>gi|86140827|ref|ZP_01059386.1| DNA polymerase III, epsilon subunit [Leeuwenhoekiella blandensis
           MED217]
 gi|85832769|gb|EAQ51218.1| DNA polymerase III, epsilon subunit [Leeuwenhoekiella blandensis
           MED217]
          Length = 221

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 93/181 (51%), Gaps = 24/181 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCPNGRKNSPEALKL 62
           R +VFD ETTG +++ DR++ IGA+EL    K N+     +F++++       + EA+ +
Sbjct: 35  RFVVFDTETTGTNAREDRMLSIGALEL----KGNKISLSSSFELYV--KQEVFNEEAVAI 88

Query: 63  HGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           HGI  E  K  K S       F +F    +A  + H+  FD+G IN  L+R+    L  +
Sbjct: 89  HGILRENRKYKKVSEEEAVKAFLEFIG--DAILVGHHVGFDIGIINYALKRLGAPKLK-N 145

Query: 122 RIIDTLSIARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  DT  + +R         P+    L+ LC+   + I+   +H A+ D+++ +  ++K+
Sbjct: 146 KFTDTGVLYKRTVHLVNITDPNKVYTLDDLCEE--LNIAKTDRHKAMGDAYITALAFLKV 203

Query: 175 M 175
           M
Sbjct: 204 M 204


>gi|325689970|gb|EGD31974.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK115]
          Length = 814

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+   +  E +K
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56

Query: 62  -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P
Sbjct: 57  ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +LC    + IS  + H AL D+   + +++K+
Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165


>gi|54309733|ref|YP_130753.1| ribonuclease T [Photobacterium profundum SS9]
 gi|54036326|sp|Q6LP25|RNT_PHOPR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|46914171|emb|CAG20951.1| putative ribonuclease T [Photobacterium profundum SS9]
          Length = 223

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L +D   + K   T    + P  G     EAL+ +G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPASTIHFHVAPFEGAVLHKEALEFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFI--NAELQRI 113
           I D F  L+   S  +   E +    ++        A  +AHNA FD  F+   +E  R+
Sbjct: 80  IRDPFSPLRGAVSEETALKEIYKQIRKEQKTADCSRAIMVAHNANFDHSFVMEASERARL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   CK  GI   ++  H AL D+   ++++ +
Sbjct: 140 KRNPFHPFATFDTAALSGLAF--GQTVLAKACKTAGIAFDNKEAHSALYDTERTAELFCE 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|300856235|ref|YP_003781219.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
 gi|300436350|gb|ADK16117.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
          Length = 1449

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 15/152 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDEF 69
           V D+ETTG     ++I EIG +++ D  K   TF  F+ P   K  P   +++  ITD+ 
Sbjct: 428 VLDLETTGFSPVTEKITEIGIMKIKD-GKVIDTFSTFVNP--EKPIPLRVVEVTNITDDM 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127
           +++  +   +F +  DF   +++  +AHNA+FDVGF+  NA++   + D       +DTL
Sbjct: 485 VRNAETIEQVFPKMLDFI--KDSVLVAHNAEFDVGFLKHNAKILGCDFD----FTYVDTL 538

Query: 128 SIARRKHPSSRN-DLNSLCKRYGI--TISHRS 156
           S+A+   P  +   L  + K  GI   ++HR+
Sbjct: 539 SLAQEVFPDFKTYKLGRIAKNLGIKVEVAHRA 570


>gi|328945970|gb|EGG40117.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis
           SK1087]
          Length = 814

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+   +  E +K
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56

Query: 62  -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P
Sbjct: 57  ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +LC    + IS  + H AL D+   + +++K+
Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165


>gi|327459895|gb|EGF06235.1| DNA polymerase III [Streptococcus sanguinis SK1057]
          Length = 814

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+   +  E +K
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56

Query: 62  -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P
Sbjct: 57  ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +LC    + IS  + H AL D+   + +++K+
Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165


>gi|229545209|ref|ZP_04433934.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
 gi|229309754|gb|EEN75741.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
          Length = 175

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|254282911|ref|ZP_04957879.1| ribonuclease T [gamma proteobacterium NOR51-B]
 gi|219679114|gb|EED35463.1| ribonuclease T [gamma proteobacterium NOR51-B]
          Length = 214

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 22/191 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-----GRKNSPEALKLHG 64
           +V D+ET G ++  D ++EI A  +        T +  LC N     G    P AL+  G
Sbjct: 19  VVIDVETGGFNADTDAVLEIAATLVGMNDDGILTPKQTLCHNVEPFEGANLEPSALEFTG 78

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  E      + +  +F  IFS       EQ    A  + HNA FD GFINA   R  I 
Sbjct: 79  IDPESPLRDAVPEAIAFGEIFSAIRKEIREQGCNRAILVGHNAHFDAGFINAASMRADIK 138

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+  GI   +   H A  D+   ++++  +
Sbjct: 139 RNPFHPFSHFDTATLAGLAY--GQTVLAKACRTAGIDFDNNEAHSAAYDAAKTAELFCNI 196

Query: 175 M-----VGGSQ 180
           +     +GG Q
Sbjct: 197 VNRWQALGGWQ 207


>gi|227499278|ref|ZP_03929390.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
 gi|227218629|gb|EEI83863.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
          Length = 1358

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 15/169 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFD+ETTGL    DRI EIGA +++D  K    +   + P      PE + ++ GIT++
Sbjct: 343 VVFDLETTGLSRYRDRITEIGACKVID-GKICEIYNELVNP--EMLIPEKITEITGITNQ 399

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDPSRIIDT 126
            ++  P    +   F +F   Q +  +  N  FDVGF+     R+  D  PL     +DT
Sbjct: 400 MVESCPKIEEVLPGFLEFC--QGSILVGQNTDFDVGFVRENCTRLGLDFNPL----YLDT 453

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L +AR      +   L+ + ++  + I   + H A  D+   + ++IKM
Sbjct: 454 LPMARALFADMKKFSLDKIARK--LEIPAFNHHRASDDARATAQIFIKM 500


>gi|148544145|ref|YP_001271515.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri
           DSM 20016]
 gi|184153518|ref|YP_001841859.1| ATP-dependent helicase [Lactobacillus reuteri JCM 1112]
 gi|227364574|ref|ZP_03848635.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM2-3]
 gi|325682311|ref|ZP_08161828.1| ATP-dependent DNA helicase DinG [Lactobacillus reuteri MM4-1A]
 gi|148531179|gb|ABQ83178.1| DnaQ family exonuclease/DinG family helicase, putative
           [Lactobacillus reuteri DSM 20016]
 gi|183224862|dbj|BAG25379.1| ATP-dependent helicase [Lactobacillus reuteri JCM 1112]
 gi|227070411|gb|EEI08773.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM2-3]
 gi|324978150|gb|EGC15100.1| ATP-dependent DNA helicase DinG [Lactobacillus reuteri MM4-1A]
          Length = 954

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 19/167 (11%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D+ETTG + +  DRII+IG V + D    N  F+  + P  R+  P ++ +L GI D+
Sbjct: 21  VVDLETTGTNVNHGDRIIQIGCVLVQDGEIINH-FETKINP--REKIPRSIVQLTGIEDK 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127
            ++  P F  I    +    E    ++AHN  FD  F+NAEL+R     L  P+  IDT+
Sbjct: 78  DVRKAPLFEDIAGTIYSLLAE--TTFVAHNVNFDFPFLNAELERAGYPSLSIPA--IDTV 133

Query: 128 SIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++++   P++++    DL S      + I H   H A+ D+   +D+
Sbjct: 134 TLSQILLPTAKSFRLRDLTS-----SLHIEHDHPHSAVSDAEATADL 175


>gi|327469619|gb|EGF15088.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK330]
          Length = 814

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+   +  E +K
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56

Query: 62  -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P
Sbjct: 57  ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +LC    + IS  + H AL D+   + +++K+
Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165


>gi|327473768|gb|EGF19186.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK408]
          Length = 814

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+   +  E +K
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56

Query: 62  -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P
Sbjct: 57  ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +LC    + IS  + H AL D+   + +++K+
Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165


>gi|160944143|ref|ZP_02091373.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444819|gb|EDP21823.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1417

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 16/194 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD ETTGLD   + + EIGAV ++   +    F  F+ P G+  +P+  +L GIT+E +
Sbjct: 399 VFDTETTGLDPGVEYLTEIGAV-IIRNGEVVEEFDTFVKP-GKPITPKITELTGITNEMV 456

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            D PS       F  F  ++    + HN   FD+ F+ A  +R +   L+P+  IDTL++
Sbjct: 457 ADAPSEKEALEAFLAFAGDRIL--VGHNVHAFDMRFLRAAAKR-SGIKLEPT-YIDTLTM 512

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH--------LLSDVYIKMMVGGSQI 181
           A+  +P   N       ++ + +     H A  DS         +L+D+  K +   S+I
Sbjct: 513 AQTMYPGLHNYKQGTINKH-LELPAYEAHRACEDSAALGRIFCVMLNDLAEKEVTKVSEI 571

Query: 182 NFGFKTNEDRFFKE 195
           N G   N +   K+
Sbjct: 572 NTGLGGNREVLKKK 585


>gi|38344168|emb|CAE03499.2| OSJNBa0053K19.7 [Oryza sativa Japonica Group]
 gi|116309750|emb|CAH66793.1| H0215F08.4 [Oryza sativa Indica Group]
 gi|125591688|gb|EAZ32038.1| hypothetical protein OsJ_16216 [Oryza sativa Japonica Group]
 gi|215712387|dbj|BAG94514.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 260

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 22/180 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI---T 66
           +VFD+ETTG   K+ RI+E    +L      N TF+  + P   +  P+ ++ H I   T
Sbjct: 63  LVFDLETTGYFHKDHRIVEFALCDL--SGGKNSTFETLVNPE--RTVPDYVE-HLIKIGT 117

Query: 67  DEFLKDK-PSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLD 119
           D   +   P FS +      F   + A      W+AHNAK FD  F+  E  R +  PL 
Sbjct: 118 DLVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSA-PLP 176

Query: 120 PSRI-IDTLSIARRKHPSS----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +  DTL +A++   +     R  L +L + YGI +SH   H A+ D  +LS V+ KM
Sbjct: 177 ADWLFFDTLLLAKKMVKAEGKKRRTSLEALREHYGI-VSHDDAHRAMRDVMILSQVFQKM 235


>gi|111018139|ref|YP_701111.1| hypothetical protein RHA1_ro01126 [Rhodococcus jostii RHA1]
 gi|110817669|gb|ABG92953.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
          Length = 588

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 18/174 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG     D I EIGAV++             L   GR   P  +++ GIT   
Sbjct: 25  VVVDLETTGARPGEDAITEIGAVKIRGGEVIAE--MATLVDPGRSIPPHIVEITGITTAM 82

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P    +   F +F   + A  +AHNA FD GF+ A     +  P     ++ T+ +
Sbjct: 83  VIDAPRIERVLPAFLEF--ARGAVLVAHNAPFDTGFLKAAASATDT-PWPKFTVLCTVKL 139

Query: 130 ARR-----KHPSSRNDLNSLCKRY--GITISHRSKHGALLDSHLLSDVYIKMMV 176
           ARR     + PS +  L+SL + +  G T +HR    AL D+    DV   ++ 
Sbjct: 140 ARRVLSRDEAPSVK--LSSLARLFDVGTTPTHR----ALDDARATVDVLHALIA 187


>gi|325479569|gb|EGC82665.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 1369

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 27/205 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL    DRI EIGAV+ ++  K    +   + P     S +   + GIT+E 
Sbjct: 354 VVFDLETTGLSKYKDRITEIGAVK-VENGKITEEYNQLVNPE-MVISEKITDITGITNEM 411

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127
           ++D P    +  +F  F  +  +  +  N  FDVGFI  N     I  +PL     +DTL
Sbjct: 412 VEDCPKIDEVMKDFLKFCGD--SILVGQNTDFDVGFIKENCFRMEIEFNPL----YLDTL 465

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            +AR      +   L+ + ++  + I   + H A  D+   + ++IKM            
Sbjct: 466 PMARALFSDMKKFSLDKIARK--LEIPAFNHHRASDDARATAQIFIKMF----------- 512

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211
              DR  K    ++ NI+ LK  +P
Sbjct: 513 ---DRIMKMNGISLSNINKLKSYRP 534


>gi|255523926|ref|ZP_05390889.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296185167|ref|ZP_06853577.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           carboxidivorans P7]
 gi|255512357|gb|EET88634.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296050001|gb|EFG89425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           carboxidivorans P7]
          Length = 1449

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 9/149 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG     ++I EIG +++ D  K    F  F+ P  +   P  +++  ITD+ +
Sbjct: 428 VLDLETTGFSPVIEKITEIGIMKIKD-GKVIDKFSCFVNPK-KPIPPRVVEVTNITDDMV 485

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D  +   +F +  DF   +++  +AHNA+FD+GF+    + +  D  D +  +DTL++A
Sbjct: 486 RDAETIEQVFPKMLDFI--KDSVLVAHNAEFDIGFLKHNARVLGYD-FDFTY-LDTLTLA 541

Query: 131 RRKHPSSRN-DLNSLCKRYGI--TISHRS 156
           +   P  +   L  + K  GI   ++HR+
Sbjct: 542 QELFPDFKTYKLGRIAKNLGIKVEVAHRA 570


>gi|254458194|ref|ZP_05071620.1| exonuclease [Campylobacterales bacterium GD 1]
 gi|207085030|gb|EDZ62316.1| exonuclease [Campylobacterales bacterium GD 1]
          Length = 272

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 71/134 (52%), Gaps = 6/134 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIET G      +IIEIGAV++ D    ++   +  C    K+  E   + GI+ E  
Sbjct: 71  IVDIETNGSKIDKHQIIEIGAVKVRDGVIIDKFESLVYCREINKHITE---ITGISVEDT 127

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K+ P+   +  EF  F    NA ++AH+ KFD  FI+  +Q+I  +PL  +R I +L++A
Sbjct: 128 KNAPNLKKVLYEFKSFLG--NAIFVAHDVKFDYKFISLSMQKIGLEPL-LNRSICSLALA 184

Query: 131 RRKHPSSRNDLNSL 144
            R   S R  L+ L
Sbjct: 185 ERTIESYRYALSYL 198


>gi|115460648|ref|NP_001053924.1| Os04g0623400 [Oryza sativa Japonica Group]
 gi|113565495|dbj|BAF15838.1| Os04g0623400 [Oryza sativa Japonica Group]
          Length = 282

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 22/180 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI---T 66
           +VFD+ETTG   K+ RI+E    +L      N TF+  +  N  +  P+ ++ H I   T
Sbjct: 63  LVFDLETTGYFHKDHRIVEFALCDL--SGGKNSTFETLV--NPERTVPDYVE-HLIKIGT 117

Query: 67  DEFLKDK-PSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLD 119
           D   +   P FS +      F   + A      W+AHNAK FD  F+  E  R +  PL 
Sbjct: 118 DLVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSA-PLP 176

Query: 120 PSRI-IDTLSIARRKHPSS----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +  DTL +A++   +     R  L +L + YGI +SH   H A+ D  +LS V+ KM
Sbjct: 177 ADWLFFDTLLLAKKMVKAEGKKRRTSLEALREHYGI-VSHDDAHRAMRDVMILSQVFQKM 235


>gi|307244994|ref|ZP_07527091.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306854159|gb|EFM86367.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
          Length = 218

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 26/193 (13%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCPNG 52
           KN+ R    ++ D+ET GL+++ D ++E+ A+         L+   K +   Q F    G
Sbjct: 12  KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPF---EG 68

Query: 53  RKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG 104
              +P++LK +GI  D  L+     +    E +            Q A  +AHNA FD  
Sbjct: 69  ANINPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQA 128

Query: 105 FINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+ A ++RIN  +DP  P  + DT ++A       +  L   C+   I    +  H AL 
Sbjct: 129 FVQAAVKRINAKRDPFHPFAMFDTATLAGFMF--GQTVLVKACQMAKIPFDGKQAHSALY 186

Query: 163 DSHLLSDVYIKMM 175
           D+   ++++  M+
Sbjct: 187 DTEKTTELFCAMV 199


>gi|162449983|ref|YP_001612350.1| exonuclease [Sorangium cellulosum 'So ce 56']
 gi|161160565|emb|CAN91870.1| exonuclease [Sorangium cellulosum 'So ce 56']
          Length = 298

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 16/170 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+E TGL  ++DR+IE+ A     D  +   T  V   P    N+     +HGI   
Sbjct: 34  VFLDLEMTGLRPESDRVIEVCAERTRGDACEDAITSLVRPEPGVFGNA----HVHGIDPR 89

Query: 69  FLKDKPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            L   P+    F+E  D  ++  + A  +AH A +DV F+ AEL R  +    P   +DT
Sbjct: 90  ELAGAPT----FAELCDRIDQVTEGAVLVAHAAAWDVAFLEAELARAGRARRLPH-YLDT 144

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSK-HGALLDSHLLSDVYIKMM 175
           L ++RR      + L SLC+  G+   HR + H A  D H L  V+ K++
Sbjct: 145 LVLSRRAFALPSHSLASLCRELGV---HRERAHRAEDDVHALRAVFRKIV 191


>gi|325687825|gb|EGD29845.1| DNA polymerase III [Streptococcus sanguinis SK72]
          Length = 814

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+   +  E +K
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56

Query: 62  -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P
Sbjct: 57  ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +LC    + IS  + H AL D+   + +++K+
Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCGL--LDISLENAHTALADAQATAQLFLKI 165


>gi|258546253|ref|ZP_05706487.1| DNA polymerase III, epsilon subunit [Cardiobacterium hominis ATCC
           15826]
 gi|258518519|gb|EEV87378.1| DNA polymerase III, epsilon subunit [Cardiobacterium hominis ATCC
           15826]
          Length = 141

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 53/87 (60%), Gaps = 3/87 (3%)

Query: 101 FDVGFINAE--LQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSK 157
           FD  F N E  L  +     D  R++DTL +AR+K    SR  L+SLCK YGI  S+R+ 
Sbjct: 3   FDQSFFNREFKLAGLKYKLEDRFRLLDTLDLARKKISGISRFSLDSLCKYYGIDNSNRTL 62

Query: 158 HGALLDSHLLSDVYIKMMVGGSQINFG 184
           HGALLDS LL++VY+K+    S  +F 
Sbjct: 63  HGALLDSQLLAEVYLKLTTEQSGFDFA 89


>gi|209809036|ref|YP_002264574.1| exonuclease [Aliivibrio salmonicida LFI1238]
 gi|208010598|emb|CAQ80976.1| exonuclease [Aliivibrio salmonicida LFI1238]
          Length = 227

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  ++ DR IEIGAV+L +    +R FQ  + P  R +S  A    GIT+ 
Sbjct: 31  VVLDFETTGLSPNQGDRAIEIGAVKLENGVIVDR-FQKLMNPGFRVSSFIA-NYTGITNA 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            L      +++  EF DF   Q    +AHNA FD  F++AEL  I +D
Sbjct: 89  MLMGADDCATVMHEFADFI--QGCNLVAHNASFDQRFLDAELDAIQRD 134


>gi|167755995|ref|ZP_02428122.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
 gi|167703987|gb|EDS18566.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
          Length = 443

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 24/171 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEA------LKLHGI 65
           D+ET   + +N+ I  IG + +  D   T + F V          PEA      ++L GI
Sbjct: 9   DVETP--NYQNNSISSIGVINVDGDGVVTTKYFLV---------DPEAHFDRFNIELTGI 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E + D+P+F  ++SE   +F   N+  +AHNA FD+  I+A LQR +  P+ P     
Sbjct: 58  TPEMVADQPNFKEVWSEIEPYFT--NSLVVAHNAVFDLSVISACLQRYDL-PIFPIFYTC 114

Query: 126 TLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T  I+R  K PS+   LN L   Y +T+ +   H AL DS    +++  ++
Sbjct: 115 TYRISRALKIPSNSYKLNDLSSYYHVTLDNH--HNALADSKACMEIFYYLL 163


>gi|219847899|ref|YP_002462332.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM
           9485]
 gi|219542158|gb|ACL23896.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM
           9485]
          Length = 280

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 8/150 (5%)

Query: 10  IVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTGLD +N  RI E+  +   ++ +        + P  R+  P+A +++GI  E
Sbjct: 16  VFFDVETTGLDLQNGHRICELAMLRR-EHRQITGQINTLINPE-RELDPQASQVNGIRAE 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  +       Q A  +AHN  FD  F+N EL R    PL     +DTL 
Sbjct: 74  DLQSAPRFAELTVQVVQL--SQQAVRVAHNLPFDESFLNMELARAGYPPLT-GPALDTLE 130

Query: 129 IARRKHPSSRN-DLNSLCKRYGI-TISHRS 156
           +ARR      +  L +L   +G+ T +HR+
Sbjct: 131 LARRLGIRRGSLSLGALATSFGLPTPTHRA 160


>gi|28898888|ref|NP_798493.1| ribonuclease T [Vibrio parahaemolyticus RIMD 2210633]
 gi|260879442|ref|ZP_05891797.1| ribonuclease T [Vibrio parahaemolyticus AN-5034]
 gi|29611937|sp|P46232|RNT_VIBPA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|28807107|dbj|BAC60377.1| ribonuclease T [Vibrio parahaemolyticus RIMD 2210633]
 gi|308093530|gb|EFO43225.1| ribonuclease T [Vibrio parahaemolyticus AN-5034]
 gi|328474555|gb|EGF45360.1| ribonuclease T [Vibrio parahaemolyticus 10329]
          Length = 214

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D         T    + P  G     EAL+ +G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLRMDEEGVLHPASTIHFHIEPFEGANLEKEALEFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD+ F+NA  +R  +
Sbjct: 80  IRDPFSPLRGAVSEQEALKEIYKLIRKEQKASDCSRAIMVAHNAAFDLSFVNAANERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++   +   +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCG 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|307253947|ref|ZP_07535799.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307256208|ref|ZP_07537995.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|307258402|ref|ZP_07540143.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306863151|gb|EFM95093.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306865389|gb|EFM97285.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306867586|gb|EFM99433.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 218

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 26/193 (13%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCPNG 52
           KN+ R    ++ D+ET GL+++ D ++E+ A+         L+   K +   Q F    G
Sbjct: 12  KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPF---EG 68

Query: 53  RKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG 104
              +P++LK +GI  D  L+     +    E +            Q A  +AHNA FD  
Sbjct: 69  ANINPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQA 128

Query: 105 FINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+ A ++RIN  +DP  P  + DT ++A       +  L   C+   I    +  H AL 
Sbjct: 129 FVQAAVKRINAKRDPFHPFAMFDTATLAGFMF--GQTVLVKACQMAKIPFDGKQAHSALY 186

Query: 163 DSHLLSDVYIKMM 175
           D+   ++++  M+
Sbjct: 187 DTEKTTELFCAMV 199


>gi|91795118|ref|YP_564769.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
 gi|91717120|gb|ABE57046.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
          Length = 204

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 58/101 (57%), Gaps = 5/101 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV+L+D  +   +FQ  + P  R NS    +  GI+++
Sbjct: 8   VVLDFETTGLSPDMGDRAIEIGAVKLVD-GQVVDSFQALINPGQRVNSFIE-QYTGISNQ 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
            LKD P  + +  +F +F    N   +AHNA FD  F++AE
Sbjct: 66  MLKDAPRSNVVMGQFTEFIAGFN--LVAHNASFDKKFLDAE 104


>gi|269127278|ref|YP_003300648.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
           43183]
 gi|268312236|gb|ACY98610.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
           43183]
          Length = 605

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 14/166 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG    +  I E+GAV++    +    F   + P G    P    L GIT + 
Sbjct: 45  VVVDLETTGGSPADSAITEVGAVKVRGGERLGE-FATLVDP-GVPIPPFITALTGITQQM 102

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P  S++   F +F   +    +AHNA FD+GF+ A     +  P     ++DT  +
Sbjct: 103 VTNAPPMSAVLPAFLEF--ARGCVLVAHNAPFDIGFLRAACT-AHDHPWPAFPVVDTADL 159

Query: 130 ARR---KHPSSRNDLNSLCK--RYGITISHRSKHGALLDSHLLSDV 170
           ARR   +       L +L +  R G    HR    AL D+    DV
Sbjct: 160 ARRVLTREEVPNCKLATLARYFRTGTEPCHR----ALADARATVDV 201


>gi|270284149|ref|ZP_05965623.2| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093]
 gi|270277190|gb|EFA23044.1| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093]
          Length = 214

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 29/172 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  DIETTGL  + + I EIGAV + D    +R F + + P G+        L GI+D  
Sbjct: 19  ISLDIETTGLAPRQETITEIGAVRVRDGRIADR-FSMLINP-GKHIPSRITALTGISDAM 76

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--------NKDPLDPS 121
           ++D P        F D+ +      I HN +FD+ F+  E   +        N   ++P+
Sbjct: 77  VEDAPMIDEAIPAFVDWVDGD--RLIGHNIRFDLSFLLKEAMLLDAALATPFNAKAVNPA 134

Query: 122 RI---------------IDTLSIARRKHPSSRNDLNSLCKRYGI--TISHRS 156
            +               +DT+ I R   PS R+ L+ L  RYG+  T +HR+
Sbjct: 135 AMTTTAEITRAMLGPDPLDTMMIDRWLFPSERHRLSDLIVRYGVADTEAHRA 186


>gi|294155324|ref|YP_003559708.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
           MP145]
 gi|291600469|gb|ADE19965.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
           MP145]
          Length = 1447

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 32/226 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLHGITD 67
           + FDIETTGL  +   +IE GA  + + S  +R  Q F+     KNS  A  + L GITD
Sbjct: 417 VCFDIETTGLSPRYHELIEFGATIIKNGSVISRE-QFFI---KAKNSLSAFTINLTGITD 472

Query: 68  EFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDP 120
           + LK+     KP+   I   F      +N   +AHN+ FD+ F+    Q+   NK  +  
Sbjct: 473 QMLKNEGLELKPALLKISKLF------ENRIAVAHNSTFDMNFL---FQKFLDNKMEIPK 523

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +  IDTL ++R      S++ L +   R GI  +  + H A  D+ +L++ +I  M   +
Sbjct: 524 TTFIDTLVVSRLLFSKDSKHRLENYVGRLGIIYNSDAAHRADYDAEILANAWIPSMNLLA 583

Query: 180 QINFG-------FKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRIT 217
           +IN         +K+N+  +FK+    V  I+L ++  K LF  ++
Sbjct: 584 EININTIVELRDYKSNQ-LYFKKFSDDVSVIALNQKGLKELFNFVS 628


>gi|308234286|ref|ZP_07665023.1| CRISPR-associated endoribonuclease Cas2 [Atopobium vaginae DSM
           15829]
          Length = 297

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 17/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ DIET+GL+  +D+IIEIGA+ + D  K    +Q  +  +    SP   +L G+TD  
Sbjct: 131 VILDIETSGLNETDDKIIEIGAIRICD--KQVDDYQCLIKRDSLNLSPAITQLTGLTDIE 188

Query: 70  LKDK---PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           L ++   P+ +   +    F    +   + +N  FD+ FIN EL+ +N++ LD +R ID 
Sbjct: 189 LANRGVNPNLA--LNGLKQFIG--HLPVLGYNIAFDMRFINNELRSMNEELLD-NREIDV 243

Query: 127 LS-IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKM 174
           +  I + K       L+++ K YGI  T+ HR    AL D+ L++ + +K+
Sbjct: 244 MRFIKKEKMFLESYALDNVLKVYGISATVPHR----ALGDAKLIAKLALKV 290


>gi|156975262|ref|YP_001446170.1| ribonuclease T [Vibrio harveyi ATCC BAA-1116]
 gi|269962098|ref|ZP_06176452.1| ribonuclease T [Vibrio harveyi 1DA3]
 gi|166200023|sp|A7MUL2|RNT_VIBHB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|156526856|gb|ABU71942.1| hypothetical protein VIBHAR_02991 [Vibrio harveyi ATCC BAA-1116]
 gi|269833182|gb|EEZ87287.1| ribonuclease T [Vibrio harveyi 1DA3]
          Length = 214

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D +       T    + P  G     EAL+ +G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHIEPFEGANLEKEALEFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD+ F+NA  +R  +
Sbjct: 80  IRDPFSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++   +   +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMEFDNREAHSALYDTQQTAELFCG 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|296333022|ref|ZP_06875479.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674874|ref|YP_003866546.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296149873|gb|EFG90765.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413118|gb|ADM38237.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 954

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 95/185 (51%), Gaps = 11/185 (5%)

Query: 2   IRKNKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           I  NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN  K+ P  +
Sbjct: 22  ILMNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN--KSIPAFI 78

Query: 61  -KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L GI+++ ++ +  F ++  E +   +   A ++AHN  FD+GF+  EL +     L 
Sbjct: 79  EQLTGISNQMVEHEQPFEAVAEEVFHLLD--GAYFVAHNIHFDLGFVKYELHKAGFH-LP 135

Query: 120 PSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              ++DT+ ++R   P      L  L +   + + H   H A  D+ +   ++++++   
Sbjct: 136 DCEVLDTVELSRIVFPGFEGYKLTELSEE--LQLRHDQPHRADSDAEVTGLIFLEILEKL 193

Query: 179 SQINF 183
            Q+ +
Sbjct: 194 RQLPY 198


>gi|262277835|ref|ZP_06055628.1| DNA polymerase III PolC-type (PolIII) [alpha proteobacterium
           HIMB114]
 gi|262224938|gb|EEY75397.1| DNA polymerase III PolC-type (PolIII) [alpha proteobacterium
           HIMB114]
          Length = 223

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 90/172 (52%), Gaps = 13/172 (7%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           VFD ETTGL+ +  D+II +  V++ ++           C    + +PE  ++H I++  
Sbjct: 29  VFDTETTGLNYNSGDKIISVSGVKVQNFQIDTEGKLDEFCDPMVEITPENEQIHHISNRM 88

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-----I 124
           +K KP+   + S+F  FF  + +  +AHN KFD  F+ + L     +    SRI     +
Sbjct: 89  VKGKPNIYDLESKFRGFF--KRSVLVAHNVKFDCNFLISNLSHTKLE----SRIREAVKL 142

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+  +   +P  ++ +L++LC    IT   + +H +L DS + + ++I ++
Sbjct: 143 DTVLYSAGVYPDLKSYELSALCDELNITHHDQLRHSSLGDSIITARLFIHLL 194


>gi|196248636|ref|ZP_03147336.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           G11MC16]
 gi|196211512|gb|EDY06271.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           G11MC16]
          Length = 911

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 15/174 (8%)

Query: 7   MRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---KL 62
           MR ++ D+ETTG +  K DRII++G   + D S   R F  F  P      P  L   +L
Sbjct: 3   MRFVIIDLETTGNVPKKGDRIIQLGMAVVEDGSIVKR-FASFFNPE----QPIPLFIQQL 57

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             I ++ ++  P F+    E       + A ++AHN  FD+ F+ AEL+R    P     
Sbjct: 58  TNIDEQTVEGAPLFADKADEITAMM--EGAYFVAHNVDFDLPFLQAELERAGWPPFT-GP 114

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            IDT+ +AR   P++ +  L  L K+ G  + H   H A  D+ + + ++I ++
Sbjct: 115 TIDTVELARIVLPTAESYKLGDLAKQLG--LHHDRPHQADSDAEVTAKLFIALL 166


>gi|167581005|ref|ZP_02373879.1| possible DNA polymerase/helicase [Burkholderia thailandensis TXDOH]
          Length = 379

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 89/163 (54%), Gaps = 10/163 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTG  +   RI EIG V +++ +  + T+   + P  +   P   +L GITD  ++ 
Sbjct: 19  DLETTGGSAVEHRITEIGVV-VVNANHVS-TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P+F+ I     +  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ ++R 
Sbjct: 76  APTFADIAPALLERLDGKL--FVAHNASFDRGFLRAEFERAGVA-FNPD-VLCTVRLSRA 131

Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 132 LFPRESRHGLDALIERHALVPS--ARHRALADADLIWQFWQKL 172


>gi|163802823|ref|ZP_02196712.1| ribonuclease T [Vibrio sp. AND4]
 gi|159173363|gb|EDP58186.1| ribonuclease T [Vibrio sp. AND4]
          Length = 214

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L      N     T    + P  G     EAL+ +G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLSMDDTGNLHPASTIHFHIEPFEGANLEKEALEFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD+ F+NA  +R  +
Sbjct: 80  IRDPFSPLRGAISEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++   +   +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMEFDNREAHSALYDTQQTAELFCG 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|138895754|ref|YP_001126207.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus thermodenitrificans NG80-2]
 gi|134267267|gb|ABO67462.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2]
          Length = 911

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 15/174 (8%)

Query: 7   MRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---KL 62
           MR ++ D+ETTG +  K DRII++G   + D S   R F  F  P      P  L   +L
Sbjct: 3   MRFVIIDLETTGNVPKKGDRIIQLGMAVVEDGSIVKR-FASFFNPE----QPIPLFIQQL 57

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             I ++ ++  P F+    E       + A ++AHN  FD+ F+ AEL+R    P     
Sbjct: 58  TNIDEQTVEGAPLFADKADEITAMM--EGAYFVAHNVDFDLPFLQAELERAGWPPFT-GP 114

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            IDT+ +AR   P++ +  L  L K+ G  + H   H A  D+ + + ++I ++
Sbjct: 115 TIDTVELARIVLPTAESYKLGDLAKQLG--LHHDRPHQADSDAEVTAKLFIALL 166


>gi|253573313|ref|ZP_04850656.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846841|gb|EES74846.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 247

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 11/174 (6%)

Query: 6   KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLH 63
           +++  VFD+ETTG      D I+  GA+++     T+  +     P  +   PE  ++L 
Sbjct: 60  ELKTAVFDLETTGFHYHYGDEILSFGAIKVEGERITDEVYYSLAKPACQ--IPERIIELT 117

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E  +  PS      EF  F +++    +AH +  D  F++  L +  K  L   R+
Sbjct: 118 GITPEMAQSAPSLLEALREFMAFVDDRVL--VAHGSAHDKAFLDVALWKTTKAHLG-HRV 174

Query: 124 IDTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DT+ IAR+  P  R    L+     Y I ++ R  H AL DS + + ++  ++
Sbjct: 175 LDTMMIARKLEPDRRISGSLDEWLAVYEIPVTKR--HHALEDSKMTAQLWTALI 226


>gi|229918731|ref|YP_002887377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Exiguobacterium sp. AT1b]
 gi|229470160|gb|ACQ71932.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium sp.
           AT1b]
          Length = 936

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           ++ D+ETTG   K+ D +IE  AV + +     R +   + P+ R   P   +L  I+DE
Sbjct: 5   VIVDLETTGHSVKSGDELIEFAAVVVQEGEVIER-YSTLIRPS-RPIPPFITQLTTISDE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +  + W   + +   ++AHN  FD+ F+N  L++         R IDT+ 
Sbjct: 63  DVSDAPTFEDVIPDIWKMLDGR--VFVAHNVAFDLTFLNESLEQAGYLAFQ-GRAIDTVE 119

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR  +P+   + L +L   + +   H   H AL D+   ++++I+M+
Sbjct: 120 LARILYPTLESHALEALSDTFDLV--HTDAHRALSDAEATAELFIRML 165


>gi|328950488|ref|YP_004367823.1| DNA polymerase III, epsilon subunit [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450812|gb|AEB11713.1| DNA polymerase III, epsilon subunit [Marinithermus hydrothermalis
           DSM 14884]
          Length = 248

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 20/162 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-----LDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D+ETTGL  + D IIE+  + +     L+YS+        L   GR   P   +L G
Sbjct: 77  VVLDLETTGLSPERDEIIEVALIRVEGARRLEYSR--------LVNPGRPIPPRITRLTG 128

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I    ++D+P   ++  E       + A  +  NA FD+GF+     +++    +   +I
Sbjct: 129 IRSGDVRDQPDVYTVLEEVVPLL--EGATLVIQNAPFDLGFLRPRFAKLSVTIRN--EVI 184

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH 165
           DT+  ARR  P   R  L+ L + +   +  RS+H A  D+ 
Sbjct: 185 DTVQWARRALPGMRRRSLDHLIEVF--EVPKRSRHRAFEDAE 224


>gi|57168588|ref|ZP_00367721.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli
           RM2228]
 gi|57020093|gb|EAL56770.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli
           RM2228]
          Length = 251

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 102/192 (53%), Gaps = 18/192 (9%)

Query: 3   RKNKMRKIVF---DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R  K+++ +F   DIE+TG   KN +I+EIGAV++ +  + +R    F      K  PE 
Sbjct: 61  RTKKIKEEIFCIVDIESTG-GIKNGQILEIGAVKIKNLQEIDR----FSSLVQVKEIPEN 115

Query: 60  L-KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           + +L GI  + +KD PS + + ++F  F   +++ ++AHN +FD GFI+  L       L
Sbjct: 116 ITELTGINLDMVKDAPSLTKVLNDFRLFL--KDSIFVAHNVRFDYGFISKALNECGFGIL 173

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              RI  T+  A+    S R  L+ L +  GI  +H   H AL D+   ++++ K  +G 
Sbjct: 174 LNRRIC-TIEFAQCCIESPRYKLDVLKELLGIKNAH---HRALNDALAAAEIF-KHCLG- 227

Query: 179 SQINFGFKTNED 190
            ++ +  KT E+
Sbjct: 228 -KLPYHIKTTEE 238


>gi|26554369|ref|NP_758303.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
 gi|26454379|dbj|BAC44707.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
          Length = 1458

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 11/170 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR--TFQVFLCPNGRKNSPEALKLHGITD 67
           ++FDIETTGL    D+IIE GA++   Y K  +  + Q+F+ P   K S +   +  I++
Sbjct: 422 VIFDIETTGLSPYYDKIIEFGAIK---YHKGVQVESIQMFINPE-EKISDKIFAITKISN 477

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126
           E +KD         +  DF  +  +  IAHN  KFD+ F+N +L+  NK  +  + +IDT
Sbjct: 478 EDVKDALKIKEALVKIKDFIGD--SVLIAHNGIKFDLPFLNCKLEE-NKMDIIKNPLIDT 534

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L I+R  +     + L  + ++Y I       H A  D+  L +++ +M+
Sbjct: 535 LQISRAINEQIHGHSLGVIARKYKIDYDETQAHRADKDAEYLLNIWKRML 584


>gi|160937823|ref|ZP_02085182.1| hypothetical protein CLOBOL_02715 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439262|gb|EDP17015.1| hypothetical protein CLOBOL_02715 [Clostridium bolteae ATCC
           BAA-613]
          Length = 245

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 74/169 (43%), Gaps = 11/169 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D+ETTGL+++ D+I EI A+ + D  +    F   + P GR+       L GITD+ 
Sbjct: 6   IALDLETTGLEARLDKITEIAALRVED-GRVEERFVTLVNP-GRQLGERITALTGITDDM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128
           +KD P       +   F    N   + HN  FD  F+    +      LD  R  IDTL 
Sbjct: 64  VKDAPVIEDTIGDVVRFCG--NLPLLGHNILFDYAFLK---RAAVNSGLDFEREGIDTLG 118

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           I R   P   + +L   C  Y   +S  + H A  D+     +Y  MM 
Sbjct: 119 ICRLFMPEDVKRNLTCACSFY--EVSQSAAHRAQADAEAAHGLYQVMMA 165


>gi|83720800|ref|YP_442134.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
 gi|167619083|ref|ZP_02387714.1| possible DNA polymerase/helicase [Burkholderia thailandensis Bt4]
 gi|257138320|ref|ZP_05586582.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
 gi|83654625|gb|ABC38688.1| possible DNA polymerase/helicase [Burkholderia thailandensis E264]
          Length = 379

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 89/163 (54%), Gaps = 10/163 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTG  +   RI EIG V +++ +  + T+   + P  +   P   +L GITD  ++ 
Sbjct: 19  DLETTGGSAVEHRITEIGVV-VVNANHVS-TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P+F+ I     +  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ ++R 
Sbjct: 76  APTFADIAPALLERLDGKL--FVAHNASFDRGFLRAEFERAGVA-FNPD-VLCTVRLSRA 131

Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 132 LFPRESRHGLDALIERHALVPS--ARHRALADADLIWQFWQKL 172


>gi|163751714|ref|ZP_02158932.1| putative DNA polymerase III [Shewanella benthica KT99]
 gi|161328366|gb|EDP99525.1| putative DNA polymerase III [Shewanella benthica KT99]
          Length = 206

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 7/167 (4%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I+ D ETTGL  ++ DR IEIGAV + D    + TFQ  + P G + S       GI++ 
Sbjct: 10  IILDFETTGLSPNQGDRAIEIGAVRIQDGIVVD-TFQELMNP-GFRVSGFIAGYTGISNA 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +      + + F DF    N   +AHNA FD  F++AEL  IN           ++ 
Sbjct: 68  MLANAAPCEEVMARFADFIGNHN--LVAHNASFDQRFLDAELDAINLSY--GGEFACSML 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IARR +  + N        Y    +    H AL DS + + +++ M+
Sbjct: 124 IARRLYQDAPNHKLGGLVEYKQIENDGVFHRALADSEMTAKLWLLML 170


>gi|157165763|ref|YP_001466765.1| DNA polymerase III subunit epsilon [Campylobacter concisus 13826]
 gi|112800127|gb|EAT97471.1| DNA polymerase III subunit epsilon [Campylobacter concisus 13826]
          Length = 267

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 15/181 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           V DIETTG  + N +IIEIGA+++ + ++  R F+ F+  +     PE + +L GI    
Sbjct: 78  VVDIETTG-GTTNGQIIEIGAIKMKNGTEIGR-FESFVAAS---VVPENITELTGIRASD 132

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P+  ++   F  F     + +IAHN  FD GFI+  L  I    L  +R + T+ +
Sbjct: 133 LVGAPNLLNVLERFKIFLG--TSVFIAHNVNFDYGFISHSLNEIGLGIL-LNRKLCTIDL 189

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           +RR   S +  L SL +  GI  +H   H AL D+   ++++    V    + F  +T E
Sbjct: 190 SRRTIASQKYGLGSLKELLGINNTH---HRALNDAIAAAEIF---KVCLKSLPFSIQTTE 243

Query: 190 D 190
           D
Sbjct: 244 D 244


>gi|328943837|ref|ZP_08241302.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Atopobium vaginae DSM 15829]
 gi|327491806|gb|EGF23580.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Atopobium vaginae DSM 15829]
          Length = 337

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 17/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ DIET+GL+  +D+IIEIGA+ + D  K    +Q  +  +    SP   +L G+TD  
Sbjct: 171 VILDIETSGLNETDDKIIEIGAIRICD--KQVDDYQCLIKRDSLNLSPAITQLTGLTDIE 228

Query: 70  LKDK---PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           L ++   P+ +   +    F    +   + +N  FD+ FIN EL+ +N++ LD +R ID 
Sbjct: 229 LANRGVNPNLA--LNGLKQFIG--HLPVLGYNIAFDMRFINNELRSMNEELLD-NREIDV 283

Query: 127 LS-IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKM 174
           +  I + K       L+++ K YGI  T+ HR    AL D+ L++ + +K+
Sbjct: 284 MRFIKKEKMFLESYALDNVLKVYGISATVPHR----ALGDAKLIAKLALKV 330


>gi|260578114|ref|ZP_05846035.1| exonuclease [Corynebacterium jeikeium ATCC 43734]
 gi|258603753|gb|EEW17009.1| exonuclease [Corynebacterium jeikeium ATCC 43734]
          Length = 198

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 30/185 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           IV D+ETTGL  + +RIIEI A+ + +    ++ +   L PN   + P+ +  L GI+D 
Sbjct: 13  IVIDLETTGLRPQEERIIEIAALHIRNGELQDK-YTTLLNPN--LSVPQEITDLTGISDG 69

Query: 69  FLKDKPSFSSIFSEFWDFFN-------------EQNAEWIAHNAKFDVGFINAELQRIN- 114
            L DKP+FS +  E  +F               E     + HN  FD  F+  E+ R   
Sbjct: 70  LLADKPTFSEVMPELLNFLRDATLTEPSTSLGFESTPRLVGHNVSFDFSFLQHEILRTQL 129

Query: 115 ------KDPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSH 165
                   P  P R++ T   +R   P     R  L ++     + I HR  H A+ D+ 
Sbjct: 130 KNSADANRPYTP-RLVCTAEASRTLIPRESVGRYRLGNVASY--LKIPHRPLHRAMSDAL 186

Query: 166 LLSDV 170
              DV
Sbjct: 187 ATYDV 191


>gi|189485715|ref|YP_001956656.1| DNA polymerase III epsilon subunit [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287674|dbj|BAG14195.1| DNA polymerase III epsilon subunit [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 198

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 9/155 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  DIETTGLD  K   I+EI  +++         ++  + P G     E  K+H I D+
Sbjct: 19  VFLDIETTGLDPEKGANIVEIAMLKVC--GGIEERYESLVNP-GLPIPSECSKIHAIYDD 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+ PSF  I    + F    ++  + HNA FD+ F+  EL  +   P+   R IDTL 
Sbjct: 76  MIKNSPSFDEIAGNVFSFIG--HSVVVCHNAPFDLLFVYRELY-LAGVPVKNIRYIDTLK 132

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +AR+      N L ++    GI    R  H A+ D
Sbjct: 133 LARQYFSFDSNKLGNIADAIGIEAELR--HRAMAD 165


>gi|325529244|gb|EGD06199.1| DNA polymerase III, epsilon subunit [Burkholderia sp. TJI49]
          Length = 205

 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL     DR  EI  + L D    +R +Q  +   GR+   + + L GIT++ 
Sbjct: 6   VLDFETTGLSPNLGDRATEIAVILLRDGQIVDR-YQSLM-NAGRRIPSDVVALTGITNDM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  + +  E   F  +     +AHNA FD  F  AEL R+  D         T+ +
Sbjct: 64  IASAPPAAKVMKEAAAFVGKHAV--VAHNAGFDKRFWQAELGRL--DVSAEHAFACTMLV 119

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ARR +P +R+  L+SL +   +  S R+ H A++D+ +   ++ ++
Sbjct: 120 ARRIYPDARSHRLSSLAEMLQLPKSGRA-HRAMVDAEMAGHLWCRL 164


>gi|497127|gb|AAA21572.1| RNase T [Vibrio parahaemolyticus]
          Length = 214

 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D         T    + P  G     EAL+ +G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLRMDEEGVLHPASTIHFHIEPFEGANLEKEALEFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD+ F+NA  +R  +
Sbjct: 80  IRDPFSPLRGAISEQEALKEIYKLIRKEQKASDCSRAIMVAHNAAFDLSFVNAANERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++   +   +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCG 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|305433007|ref|ZP_07402163.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20]
 gi|304443708|gb|EFM36365.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20]
          Length = 253

 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 102/192 (53%), Gaps = 18/192 (9%)

Query: 3   RKNKMRKIVF---DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R  K+++ +F   DIE+TG   KN +I+EIGAV++ +  + +R    F      K  PE 
Sbjct: 63  RTKKIKEEIFCIVDIESTG-GIKNGQILEIGAVKIKNLQEIDR----FSSLVQVKEIPEN 117

Query: 60  L-KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           + +L GI  + +KD PS + + ++F  F   +++ ++AHN +FD GFI+  L       L
Sbjct: 118 ITELTGINLDMVKDAPSLTKVLNDFRLFL--KDSIFVAHNVRFDYGFISKALNECGFGIL 175

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              RI  T+  A+    S R  L+ L +  GI  +H   H AL D+   ++++ K  +G 
Sbjct: 176 LNRRIC-TIEFAQCCIESPRYKLDVLKELLGIKNAH---HRALNDALAAAEIF-KHCLG- 229

Query: 179 SQINFGFKTNED 190
            ++ +  KT E+
Sbjct: 230 -KLPYHIKTTEE 240


>gi|297625374|ref|YP_003687137.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921139|emb|CBL55686.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 203

 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 11/164 (6%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG   ++ DRIIEIG V L      +  +   + P   + +  A ++H IT   
Sbjct: 6   VLDLETTGFSPARGDRIIEIGLVRLDPQGHVDDEWSTLVNP---RRTVRATRVHHITSAD 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128
           +   P+ + +     D   ++    +AHN+ FDVGF+ AEL+      P +P   + T+ 
Sbjct: 63  VAAAPTMAELAPGLVDKLRDRVV--VAHNSSFDVGFLTAELRTAGMTIPPEPIPSVCTMR 120

Query: 129 IARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            + R  H  SR  L   C+  G+++  R  H AL D+   ++++
Sbjct: 121 QSTRFLHARSRR-LVDCCEAAGVSL--RDAHSALGDARATAELF 161


>gi|294632065|ref|ZP_06710625.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
 gi|292835398|gb|EFF93747.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
          Length = 240

 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 15/157 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68
           I FD+ETTG D +  RI+    +E+ D     R  + +L   G    P+A+ +HGI+ E 
Sbjct: 9   IGFDLETTGTDPRTARIVTAAVIEVRDGEPAGR--REWLADPGVPIPPDAVAVHGISTER 66

Query: 69  -FLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL------- 118
              + +P+   +   +E    +       +A+NA FD+  ++AEL+R     L       
Sbjct: 67  AAAEGQPADRVADAIAEALTGYWRAGVPVVAYNAAFDLTLLSAELRRYGLPSLADRLGGA 126

Query: 119 DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITIS 153
           +P  ++D  +I R   ++   +  L ++C  YG+ + 
Sbjct: 127 EPGPVVDPYTIDRWADRYRRGKRTLEAVCTEYGVVLG 163


>gi|293189820|ref|ZP_06608534.1| putative DNA polymerase III, epsilon subunit [Actinomyces
           odontolyticus F0309]
 gi|292821235|gb|EFF80180.1| putative DNA polymerase III, epsilon subunit [Actinomyces
           odontolyticus F0309]
          Length = 540

 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL +  + I EIGAV + D +  +  F   + P+ R   P    L GIT   
Sbjct: 20  VVVDLETTGLGAGAE-ITEIGAVRIRDGAVVDE-FSSLVKPS-RPIPPFITSLTGITPAM 76

Query: 70  LKDKPSFSSIFSEF--WDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           + D    +S+   F  W      ++   +AHNA FDVGF+     R    P    R++DT
Sbjct: 77  VADADPIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRA-ARACARPWPRVRVVDT 135

Query: 127 LSIARRKHPSS--RN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L++AR   P    RN  L ++   +G       +H AL D+   +++ +  +
Sbjct: 136 LALARLALPRPLVRNHKLGTVASYFGTATV--PEHRALGDARATAEILLGFI 185


>gi|91784877|ref|YP_560083.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
 gi|91688831|gb|ABE32031.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
          Length = 395

 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 90/168 (53%), Gaps = 13/168 (7%)

Query: 10  IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67
           IVF D+ETTG  +   RI E+G VE+     +  +  V    + ++  P  ++ L GIT+
Sbjct: 27  IVFVDLETTGGSTAEHRITEVGVVEVGPAGVSRWSSLV----DPQQPIPSFIQQLTGITN 82

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  P+F +I    ++  N +   ++AHNA FD GF+  E +R      DP  ++ T+
Sbjct: 83  AMVRGAPTFEAIAPALFERLNGKL--FVAHNASFDRGFLRGEFRRAGLA-FDPD-VLCTV 138

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++R   P+  R+ L++L +R+ +  S R  H AL D+ L+   + ++
Sbjct: 139 RLSRALFPAEKRHGLDALVERHTLVPSDR--HRALADADLIWQFWQRL 184


>gi|120598713|ref|YP_963287.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1]
 gi|120558806|gb|ABM24733.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1]
          Length = 212

 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 7/168 (4%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL  ++  R IEIGAV L++     + F   + P G + S       GI+++
Sbjct: 14  VVLDFETSGLSPNQGARAIEIGAV-LIENGVITQRFSELMGP-GFRISSFIEDYTGISNQ 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++      + + F DF  + +   +AHNA FD  F++AE   I+ +     +   +L 
Sbjct: 72  MLRNAAPCHEVMARFADFIGDNH--LVAHNAAFDQRFLDAEFAHIHHE--YQGQFACSLL 127

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +ARR +P + N   +   RY    ++ + H AL D+ +   +++ M+ 
Sbjct: 128 LARRLYPLASNHQLATLVRYKQLPNNGTFHRALADAEMTGHLWLAMLA 175


>gi|332361545|gb|EGJ39349.1| DNA polymerase III [Streptococcus sanguinis SK1056]
          Length = 814

 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG + L++     +T++  + P+   +  E +K
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIG-IALIENGIITKTYETDVNPHEELD--EHIK 56

Query: 62  -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P
Sbjct: 57  ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +LC    + IS  + H AL D+   + +++K+
Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCGL--LDISLENAHTALADAQATAQLFLKI 165


>gi|311899062|dbj|BAJ31470.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae
           KM-6054]
          Length = 329

 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 12/163 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL  ++DR+I  G  +L    +    +   + P   +  P  + +HG+T E L
Sbjct: 27  VVDVETTGL-GRSDRVISAGVYQLDPDGEITDHWYTLVNP---QRDPGPVWIHGLTSEVL 82

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSI 129
              P+F  + +EF +   ++    +AHNA FD   I+ E  R   + P++  + + T+ +
Sbjct: 83  AGAPTFPEVAAEFAERLRDRVL--VAHNALFDWNMISREFSRAGLRAPVE--QRLCTMVL 138

Query: 130 AR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           AR  + P     L+SL   +   +  R  H AL D+ +L++V+
Sbjct: 139 ARDLRLPLPNGKLSSLAAHF--DVRQRQAHHALDDARVLAEVF 179


>gi|68535798|ref|YP_250503.1| putative exonuclease [Corynebacterium jeikeium K411]
 gi|68263397|emb|CAI36885.1| putative exonuclease [Corynebacterium jeikeium K411]
          Length = 198

 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 30/185 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           IV D+ETTGL  + +RIIEI A+ + +    ++ +   L PN   + P+ +  L GI+D 
Sbjct: 13  IVIDLETTGLRPQEERIIEIAALHIRNGELQDK-YTTLLNPN--LSVPQEITDLTGISDG 69

Query: 69  FLKDKPSFSSIFSEFWDFFN-------------EQNAEWIAHNAKFDVGFINAELQRIN- 114
            L DKP+FS +  E  +F               E     + HN  FD  F+  E+ R   
Sbjct: 70  LLADKPTFSEVMPELLNFLRDATLTEPSTSLGFESTPRLVGHNVSFDFSFLQHEILRTQL 129

Query: 115 ------KDPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSH 165
                   P  P R++ T   +R   P     R  L ++     + + HR  H A+ D+ 
Sbjct: 130 KNSAYANRPYTP-RLVCTAEASRTLIPRESVGRYRLGNVASY--LKVPHRPLHRAMSDAL 186

Query: 166 LLSDV 170
              DV
Sbjct: 187 ATYDV 191


>gi|291454901|ref|ZP_06594291.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
 gi|291357850|gb|EFE84752.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 247

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 21/159 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD+ETTG D +  RI+    +E+ D  +  R  + +L   G      A  +HGITD  
Sbjct: 19  IGFDLETTGTDPREARIVTAAVIEVADGER--RGHRTWLADPGIPIPAGATAVHGITDAR 76

Query: 70  LKDKPS----FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---------QRINKD 116
              + S     +   +E    +       +A+NA FD+  + AEL         +R+   
Sbjct: 77  AAAEGSPPDRVADAVAEALTGYWRAGVPVVAYNAPFDLTLLAAELRRHRLPSLAERLGGA 136

Query: 117 PLDPSRIIDTLSIAR---RKHPSSRNDLNSLCKRYGITI 152
           P+ P  +ID L++ R   R    SR  L+++C  YG+T+
Sbjct: 137 PVGP--VIDPLTVDRAVDRYRKGSRR-LSAVCAEYGVTL 172


>gi|116696325|ref|YP_841901.1| putative exonuclease [Ralstonia eutropha H16]
 gi|113530824|emb|CAJ97171.1| putative exonuclease [Ralstonia eutropha H16]
          Length = 220

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 6/129 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFDIETTGLDS+   I+EIGA+ +   S  + TFQV + P+ RK   +  +L GIT 
Sbjct: 51  RFVVFDIETTGLDSERHEILEIGAIRVNRNSNNHDTFQVLVKPS-RKVPKKITELTGITP 109

Query: 68  EFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           E ++ +  S  S   +F  F    N   ++ NA+FD+ FI+    + +    +P  +   
Sbjct: 110 EMIEAEGVSLESAVQDFAKF--AGNLRLVSFNAEFDMAFISKAAGKSSITFANP--VSCA 165

Query: 127 LSIARRKHP 135
           L ++RR  P
Sbjct: 166 LKMSRRAWP 174


>gi|90577496|ref|ZP_01233307.1| putative DNA polymerase III [Vibrio angustum S14]
 gi|90440582|gb|EAS65762.1| putative DNA polymerase III [Vibrio angustum S14]
          Length = 207

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 11/169 (6%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  ++ DR IEIGAV+L++    ++ FQ  + P G + S       GI++ 
Sbjct: 11  VVLDFETTGLSPNQGDRAIEIGAVKLVNGEVVDQ-FQQLMNP-GFRVSSFIEGYTGISNN 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P  + +   F DF  + N   +AHNA FD  F++AEL  I +          ++ 
Sbjct: 69  MLRTAPPCNEVMDAFADFIGDAN--LVAHNASFDQRFLDAELADIGR--YYTGTFTCSML 124

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSK-HGALLDSHLLSDVYIKMM 175
           IARR +  + N  L +L       I H    H AL DS + + +++ M+
Sbjct: 125 IARRLYQHAPNHKLGTLVDFK--HIEHNGVFHRALADSEMTARLWLVMI 171


>gi|260655785|ref|ZP_05861254.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
 gi|260629401|gb|EEX47595.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
          Length = 208

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 5/130 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIETTGL  ++  IIE+GA++ +   K    F   + P G         +HGITD+ 
Sbjct: 13  VALDIETTGLSPRSCSIIEVGALKFVP-GKKGEEFSSLIDP-GCPIPASGRSIHGITDDM 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +P    + +   DF     A  + HNA FD+ FI   L ++ +       + DTL +
Sbjct: 71  VAGQPRVEEVIAGLLDFVGP--APLVLHNAPFDLSFIAPVLDKLGRK-WQAMTVFDTLPL 127

Query: 130 ARRKHPSSRN 139
           +R   P  R+
Sbjct: 128 SRVAFPGLRS 137


>gi|307249394|ref|ZP_07531386.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306858580|gb|EFM90644.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 218

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 26/193 (13%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCPNG 52
           KN+ R    ++ D+ET GL+++ D ++E+ A+         L+   K +   Q F    G
Sbjct: 12  KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPF---EG 68

Query: 53  RKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG 104
              +P++LK +GI  D  L+     +    E +            Q A  +AHNA FD  
Sbjct: 69  ANINPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQA 128

Query: 105 FINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+ A ++RIN  +DP  P  + DT ++    +   +  L   C+   I    +  H AL 
Sbjct: 129 FVQAAVKRINAKRDPFHPFAMFDTATLTGFMY--GQTVLVKACQMAKIPFDGKQAHSALY 186

Query: 163 DSHLLSDVYIKMM 175
           D+   ++++  M+
Sbjct: 187 DTEKTTELFCAMV 199


>gi|125624796|ref|YP_001033279.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124493604|emb|CAL98589.1| Probable ATP-dependent helicase dinG homolog [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300071596|gb|ADJ60996.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 791

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 91/173 (52%), Gaps = 18/173 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E T   S  ++II+IG + L++  K   T+   + P+     P   +L G++D
Sbjct: 3   RYAVVDLEATDAHSSENKIIQIG-IALVEGGKIVETYSTEVNPH-EPLLPRISELTGLSD 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-----FINAELQRINKDPLDPSR 122
           + LK  P FS + SE        ++ ++AHNA+FD G     F+NA L+       +   
Sbjct: 61  KQLKSAPDFSEVASEVRKLLT--DSVFVAHNARFDYGLLEKSFLNAGLE------FNEML 112

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +DT+ +AR  +P+  +  L +L ++  + ++H   H A+ D++  +++ I++
Sbjct: 113 RVDTVDLARVFYPTFEKYGLEALSEK--LDLAHDHPHAAVSDAYATAELLIRI 163


>gi|194246482|ref|YP_002004121.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
 gi|193806839|emb|CAP18268.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
          Length = 1522

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 15/174 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALK-LHG 64
           M  +VFDIETTG     D+IIEI   ++    K N    Q +   N   + PE +  L  
Sbjct: 414 MEYVVFDIETTGFSKVRDKIIEISGFKI----KNNIVIDQFYSLVNPEIDLPENIYLLTK 469

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRI 123
           I +E LK+ P    +  +F  F   +N   +AHNA FDV FI  + +++N   PL P  +
Sbjct: 470 IKNETLKNAPKILQVLPDFLKFI--KNTCLVAHNASFDVSFIFEKSKQLNISFPLLP--V 525

Query: 124 IDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IDTL++++    S      L  L  ++ + +     H A  D+   +++++K++
Sbjct: 526 IDTLALSQYYFSSFMKFFSLKRLAAKFKVKLEEH--HRAKDDAKATTEIFMKIL 577


>gi|119717352|ref|YP_924317.1| hypothetical protein Noca_3128 [Nocardioides sp. JS614]
 gi|119538013|gb|ABL82630.1| DNA polymerase III, epsilon subunit [Nocardioides sp. JS614]
          Length = 601

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 89/184 (48%), Gaps = 23/184 (12%)

Query: 10  IVFDIETTGLDSKNDRII-EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67
            V D+ETTG  ++   +I EIGAV++    +    FQ  +  N R   P  +  L GI++
Sbjct: 31  CVVDLETTGGSAEGGAMITEIGAVKVRG-GEVLGEFQTLV--NPRTEIPAFIAVLTGISN 87

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN--AELQRINKDPLDPSRIID 125
             + D P   +    F +F     +  +AHNA FDVGF+   AE Q     P     ++D
Sbjct: 88  SMVADAPPVEAALPAFLEF--AAGSVLVAHNAPFDVGFLRYFAEQQ---GRPWPGFEVVD 142

Query: 126 TLSIARRKHPSSRND-----LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGG 178
           T  +ARR    SR+D     L+SL K +G T +    H AL D+    DV   +M  +GG
Sbjct: 143 TARLARRV--VSRDDAPNCKLSSLAKAFGSTTT--PNHRALSDARATVDVLHGLMERLGG 198

Query: 179 SQIN 182
             ++
Sbjct: 199 VGVH 202


>gi|145589827|ref|YP_001156424.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048233|gb|ABP34860.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 466

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 20/161 (12%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEAL-KLHGITDEFL 70
           DIETTG     DRI EIG   L      N   QV+    N +   P+ + +L GI+ + +
Sbjct: 15  DIETTGSHFDRDRITEIGIKTL-----ANDGIQVWERLINPQTFIPQNIQRLTGISPQMV 69

Query: 71  KDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +PSF  +  E      +Q  E   ++AHNA+FD GFI A  +R+  D   P +++ T+
Sbjct: 70  EGQPSFDQVAKEL-----KQELEGKIFVAHNARFDYGFIKASFKRVGID-FKP-KVLCTV 122

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            ++R   P   R++L+++   +G+ +S R  H AL D+ LL
Sbjct: 123 KLSRLLFPEQPRHNLDTIINAHGLQVSAR--HRALGDADLL 161


>gi|257461276|ref|ZP_05626373.1| DNA polymerase III subunit epsilon [Campylobacter gracilis RM3268]
 gi|257441304|gb|EEV16450.1| DNA polymerase III subunit epsilon [Campylobacter gracilis RM3268]
          Length = 268

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 74/152 (48%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           DIET G    N +IIEIGA++     + +R       P   +N  E   L GI  + L  
Sbjct: 77  DIETNG-GLSNGQIIEIGAIKTRGTQELDRFESFVYAPVVPENITE---LTGICADDLVG 132

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P  +S+   F  F    ++ ++AHN KFD GFI+A LQ+     L   R+  T+ +ARR
Sbjct: 133 APPLASVLERFRLFLG--DSVFVAHNVKFDYGFIDASLQKCGFGMLLNRRLC-TVELARR 189

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
              + R  L SL +  G+   H   H AL D+
Sbjct: 190 TIEAQRYGLGSLKELLGVQNVH---HRALSDA 218


>gi|116512711|ref|YP_811618.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108365|gb|ABJ73505.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11]
          Length = 791

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 91/173 (52%), Gaps = 18/173 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E T   S  ++II+IG + L++  K   T+   + P+     P   +L G++D
Sbjct: 3   RYAVVDLEATDAHSSENKIIQIG-IALVEGGKIVETYSTEVNPH-EPLLPRISELTGLSD 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-----FINAELQRINKDPLDPSR 122
           + LK  P FS + SE        ++ ++AHNA+FD G     F+NA L+       +   
Sbjct: 61  KQLKSAPDFSEVASEVRKLLT--DSVFVAHNARFDYGLLEKSFLNAGLE------FNEML 112

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +DT+ +AR  +P+  +  L +L ++  + ++H   H A+ D++  +++ I++
Sbjct: 113 RVDTVDLARVFYPTFEKYGLEALSEK--LDLAHDHPHAAVSDAYATAELLIRI 163


>gi|332306380|ref|YP_004434231.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173709|gb|AEE22963.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 788

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG      RI EIGAV++++  +   ++   + P  R+      +L GI+++ 
Sbjct: 624 VVVDVETTGGCKPGHRITEIGAVKVIN-GRVVDSWSSLINPE-RRVPHFITRLTGISNDM 681

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ P F  +  +   F   Q+  ++AHN  FD GF   E  R+ +    P   + T+  
Sbjct: 682 VEEAPLFCEVIDDLECFM--QDCIFVAHNVNFDYGFFKLEYARLERSFSMPK--LCTVRE 737

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            R+ +P S++  L +L K YG+++ +   H AL D+   +++ I
Sbjct: 738 MRKYYPGSKSYSLGNLTKEYGLSLDNH--HRALCDAQAAAELLI 779


>gi|268680225|ref|YP_003304656.1| DNA polymerase III subunit epsilon [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618256|gb|ACZ12621.1| DNA polymerase III, epsilon subunit [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 260

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 10/165 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           + DIE  G     D IIEIGAV +++  K    F            PE++ +L GIT E 
Sbjct: 73  IVDIEANGSKPALDAIIEIGAV-MVEKGKIVGEFSSL---AKTDVLPESIVQLTGITLEE 128

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   PS +S+   F  F   ++A ++AHN  FD  FI+  L+     PL  +R +DT+ +
Sbjct: 129 LSFAPSLNSVLEGFRLFI--KDAVFVAHNVNFDYYFISHSLEMAGFGPL-LNRRLDTIDL 185

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           AR+   + +  L++L +  GIT  +   H AL D+   ++V + +
Sbjct: 186 ARKCIEAPKYGLSALAEHLGITFENH--HRALYDAKATTEVLLHV 228


>gi|310642523|ref|YP_003947281.1| dnaq family exonuclease/ding family helicase [Paenibacillus
           polymyxa SC2]
 gi|309247473|gb|ADO57040.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
           polymyxa SC2]
          Length = 960

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGI 65
           M+  V D ETTG  S +D II++G + ++D+  + +R +  ++ P GR   P    L GI
Sbjct: 1   MKFAVLDFETTGTQSADD-IIQVG-LAIIDHDNSISRVYGSYVNP-GRSIPPFITGLTGI 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+ +KD P+   +  E     ++     + HN  FD  F+ + L R    P    RI+D
Sbjct: 58  TDDDVKDAPALEEMMMELVPMLDD--VVLVGHNVAFDFNFLQSALDRCGYLPFS-GRILD 114

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+   +   PS S   L  +   +G  ++H   H A  D+   ++V++K +
Sbjct: 115 TMDFLKIMFPSLSSYQLGFVSSEFG--LAHDRPHQADSDALATAEVFLKCL 163


>gi|300087648|ref|YP_003758170.1| DNA polymerase III subunit epsilon [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527381|gb|ADJ25849.1| DNA polymerase III, epsilon subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 260

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 8/162 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTGL+   DRI+EI  V+LL D ++ +R+    L   G      A  +HGITD+
Sbjct: 11  VFFDLETTGLNPLKDRIVEITLVKLLPDGTEESRS---RLIDPGIPIPETATAIHGITDD 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-PLDPSRIIDT 126
            +  +PSF+ I   F DF   +  +    N  KFD+  + AE +R   D      RIIDT
Sbjct: 68  RVAGQPSFNRIAKSFRDFL--EGCDLCGFNIKKFDIPMLEAEFRRAGVDFSRAGRRIIDT 125

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             I  + HP       SL     +   H S   A   + +LS
Sbjct: 126 QVIFHKFHPRGLEAAYSLYCGKQLANLHSSDADARACAEILS 167


>gi|239983070|ref|ZP_04705594.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 237

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 21/159 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD+ETTG D +  RI+    +E+ D  +  R  + +L   G      A  +HGITD  
Sbjct: 9   IGFDLETTGTDPREARIVTAAVIEVADGER--RGHRTWLADPGIPIPAGATAVHGITDAR 66

Query: 70  LKDKPS----FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---------QRINKD 116
              + S     +   +E    +       +A+NA FD+  + AEL         +R+   
Sbjct: 67  AAAEGSPPDRVADAVAEALTGYWRAGVPVVAYNAPFDLTLLAAELRRHRLPSLAERLGGA 126

Query: 117 PLDPSRIIDTLSIAR---RKHPSSRNDLNSLCKRYGITI 152
           P+ P  +ID L++ R   R    SR  L+++C  YG+T+
Sbjct: 127 PVGP--VIDPLTVDRAVDRYRKGSRR-LSAVCAEYGVTL 162


>gi|194468010|ref|ZP_03073996.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri
           100-23]
 gi|194452863|gb|EDX41761.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri
           100-23]
          Length = 954

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 19/172 (11%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D+ETTG + +  DRII+IG V + D    N  F+  + P  R+  P ++ +L GI D+
Sbjct: 21  VVDLETTGTNVNHGDRIIQIGCVLVQDGEIINH-FETKINP--REKIPRSIVQLTGIEDK 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127
            ++  P F  I    +    E    ++AHN  FD  F+NAEL+R     L  P+  IDT+
Sbjct: 78  DVRKAPLFEDIAGTIYSLLAE--TTFVAHNVNFDFPFLNAELERAGYPSLSIPA--IDTV 133

Query: 128 SIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++++   P++++    DL S      + I H   H A+ D+   +++   ++
Sbjct: 134 TLSQILLPTAKSFRLRDLTS-----SLHIEHDHPHSAVSDAEATAELLTDLL 180


>gi|224541223|ref|ZP_03681762.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525868|gb|EEF94973.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM
           15897]
          Length = 212

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 86/191 (45%), Gaps = 24/191 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--------- 60
           IV DIE TGL+ + +R+IE+ A++ +++ +  R F   + P  R   P  L         
Sbjct: 16  IVVDIEATGLNPETERLIEVAAIKYINHKEVAR-FSELINP-LRDQLPVDLLDKDKTIYI 73

Query: 61  -----KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
                 L GI++  L D      +  E+  F    N   I HN +FD+ FI   L R + 
Sbjct: 74  SDFIENLTGISNRMLHDARGEKDVLREYIKFIG--NDVIIGHNVRFDIRFIYDALLR-DY 130

Query: 116 DPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L  +  IDTL IAR+       R  L  L   Y I  SH   H A+ D  +  DVY +
Sbjct: 131 GVLFQNDYIDTLKIARKLLHEDLKRYRLKDLADHYHIDYSH--AHRAVNDCEITHDVY-E 187

Query: 174 MMVGGSQINFG 184
           MM+     NFG
Sbjct: 188 MMMEDIFNNFG 198


>gi|212634649|ref|YP_002311174.1| ribonuclease T [Shewanella piezotolerans WP3]
 gi|212556133|gb|ACJ28587.1| Ribonuclease T [Shewanella piezotolerans WP3]
          Length = 235

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 26/193 (13%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRK 54
           KN+ R    +V D+ET G +SK D ++EI AV +L        + ++T    + P  G  
Sbjct: 15  KNRFRGYFPVVIDVETAGFNSKTDALLEI-AVTMLKMDDDGVLQLDKTLHYHIEPFEGAN 73

Query: 55  NSPEALKLHGI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAEW-----IAHNAKFDVG 104
             PEAL  +GI  T+     + +K +F  IF E      ++ +E      +AHNA FD G
Sbjct: 74  LEPEALAFNGIDPTNPLRGAVSEKEAFLEIFKEVKK--AQKASECHRSIIVAHNAAFDHG 131

Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F++  ++R  + + P  P    DT ++A       +  L   C   GI   +R  H AL 
Sbjct: 132 FVSEAIERNGLKRTPFHPFATFDTAALAGLA--IGQTVLAKACAMAGIPFDNREAHSALY 189

Query: 163 DSHLLSDVYIKMM 175
           D+   ++++  ++
Sbjct: 190 DTERTAELFCLIV 202


>gi|317056777|ref|YP_004105244.1| DNA polymerase III subunit alpha [Ruminococcus albus 7]
 gi|315449046|gb|ADU22610.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7]
          Length = 1500

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 8/166 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD+ETTG ++K D+IIEIGAV+L +    ++ F + + P     +     L  ITD+ 
Sbjct: 450 ICFDLETTGTNAKEDKIIEIGAVKLRNLEIVDK-FDMLVDPE-VPLTEFISNLTNITDDM 507

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LK +    +    F  F  +     +AHNA FD GFI    +R+  D    S  +DT+ +
Sbjct: 508 LKGQADIRTAIDAFIAFCGDSPC-LVAHNAPFDTGFIRNTCERLGIDFNFSS--VDTVPM 564

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++   P   R+ LN + + +G        H    D+ +L  ++I++
Sbjct: 565 SQLMLPQLERHKLNYVAEHFG--YGDFQHHRGCDDAEVLGHIFIEL 608


>gi|290969003|ref|ZP_06560538.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290780959|gb|EFD93552.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 869

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 15/216 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+E+TG +   D II+I AV L         F  +L P+  +   ++  +HG++DEF
Sbjct: 501 IVFDVESTGTNPLQDEIIQIAAVRLRTDGTIQEKFMTYLRPS--RTVGDSYAIHGLSDEF 558

Query: 70  L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L K+          F  F   +++  + HN  +D+  + +EL R++         +DTL 
Sbjct: 559 LQKNGTDARRALQNFLTF--AKDSLIVGHNVLYDISILQSELSRLSLPCPTEMPYMDTLD 616

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGA----LLDSHLLSDVYIKMMVGGSQINF 183
           I RR +P   +  L  L   +  + +H+  H A    L  + LL  V  + ++  +    
Sbjct: 617 IYRRFYPDLEKYTLEFLSHHF--STAHKPSHNAWDDILATADLLQTVLQEKILSQTATRR 674

Query: 184 G-FKTNEDRF--FKEEKKTVPNISLLKRDKPLFTRI 216
             F T   RF  F E+   +   S   R   L TRI
Sbjct: 675 ELFTTYAHRFISFSEKISALRRQSYSLRPHELLTRI 710


>gi|170697844|ref|ZP_02888929.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170137231|gb|EDT05474.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 205

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL     DR  EI  + L D    +R +Q  +   GR+   + + L GIT+E 
Sbjct: 6   VLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLM-NAGRRIPSDVVALTGITNEM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  S +  E   F    N   +AHNA FD  F  AEL  +            T+ +
Sbjct: 64  IASAPPVSQVMKEAAAFVG--NHPLVAHNAGFDKRFWQAELGMLGMAA--EHAFACTMLV 119

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ARR +P +R+  L+SL     +  + R+ H A++D+ + S ++ ++
Sbjct: 120 ARRIYPHARSHRLSSLADMLRLPQTGRA-HRAMVDAEIASHLWCRL 164


>gi|89098849|ref|ZP_01171730.1| hypothetical protein B14911_05299 [Bacillus sp. NRRL B-14911]
 gi|89086525|gb|EAR65645.1| hypothetical protein B14911_05299 [Bacillus sp. NRRL B-14911]
          Length = 243

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 7/169 (4%)

Query: 5   NKMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           ++M  IV DIETTG    + D II IGAV++ + +         L    +  SP+  +L 
Sbjct: 55  DRMEAIVMDIETTGFFPDQGDEIISIGAVKIENGTINEDKKFYSLIRYEKTLSPQIEQLT 114

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G+    LK+ P    +  EF+ F   +    IAH+A+ +  F+     +  K PL   RI
Sbjct: 115 GLRGSQLKEAPPLPEVLIEFFKFCEARTI--IAHHARHEKSFLQNASWKHFKAPLK-HRI 171

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           IDT  + R   P  +   L  LC   GI +  R  H AL D+ L ++++
Sbjct: 172 IDTSFLYRIAEPELNLQRLEDLCSHNGIPVMER--HHALEDARLAAELW 218


>gi|210621010|ref|ZP_03292395.1| hypothetical protein CLOHIR_00338 [Clostridium hiranonis DSM 13275]
 gi|210154994|gb|EEA86000.1| hypothetical protein CLOHIR_00338 [Clostridium hiranonis DSM 13275]
          Length = 276

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 7/124 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGL++  + I EI A++  DY +    F  ++ P  +K   +   L GIT+E 
Sbjct: 97  IVFDLETTGLEAHKEAITEIAAIK-FDYDEPVEYFHTYVNPK-KKIREKITDLTGITNEM 154

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
           +   P    +   F  F ++     I+HN  FD+ FI   +  +  K P   ++ IDTL+
Sbjct: 155 VASAPPIEYVLPNFLKFIDKYT--LISHNVSFDMSFILDPMYNLGYKKP--GNKAIDTLA 210

Query: 129 IARR 132
           +ARR
Sbjct: 211 LARR 214


>gi|291557306|emb|CBL34423.1| CRISPR-associated protein Cas2, E. coli subfamily [Eubacterium
           siraeum V10Sc8a]
          Length = 268

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           V DIETTGL+  +D IIE+GAV + + S    T+ V +  +  K  PEA+ +L GIT+E 
Sbjct: 107 VIDIETTGLNP-DDEIIELGAVTVENGS-VAETYSVLVKTD--KKIPEAIIRLTGITEEL 162

Query: 70  LKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L  + +  S   SEF    N +    + HN  FD+ FI +     NK    PS+IIDT+ 
Sbjct: 163 LASEGTDKSKALSEFAMRCNGK--PLVGHNIGFDLNFIKSACAE-NKIDFVPSKIIDTVK 219

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           I+R+    +   L ++   + +  +    H AL D  L   +Y K+
Sbjct: 220 ISRKLLDINSYSLAAIADYFDLHYNKDRIHRALDDCLLTQRIYEKL 265


>gi|212640084|ref|YP_002316604.1| Exonuclease [Anoxybacillus flavithermus WK1]
 gi|212561564|gb|ACJ34619.1| Exonuclease [Anoxybacillus flavithermus WK1]
          Length = 222

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 8/169 (4%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTG      DR+IEIGAV++   +   + TF  ++ PN R   P  ++L  IT+E
Sbjct: 31  VFDTETTGFHVATVDRLIEIGAVQVKGTAVIEDETFHTYVNPN-RDLPPVIVELTNITEE 89

Query: 69  FLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +K  P+      +F+ F  + Q+  ++ H   FD+  +  EL+R       P+  IDTL
Sbjct: 90  KVKHAPTAIEALQQFFQFVEQKQSVCFVGHYISFDLFVLKHELRREKMKFRKPT-FIDTL 148

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +     PS    DL    + +G  +  R  H A+ D+   + ++++++
Sbjct: 149 DLIGFIAPSYDMRDLERYAQAFGTRMYER--HSAIGDALTTAYLFVELL 195


>gi|238060312|ref|ZP_04605021.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
 gi|237882123|gb|EEP70951.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
          Length = 604

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 94/224 (41%), Gaps = 29/224 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG       I EIGAV++    +        + P G    P    L GIT   
Sbjct: 53  VVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITQAM 110

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P    +   F +F    +A  +AHNA +DVGF+ A   R      +P R++DT ++
Sbjct: 111 LVPAPPIEQVLPSFLEFV--ADAVLVAHNAPYDVGFLKAACARHGYRWPNP-RVLDTAAL 167

Query: 130 ARRKHPSSRNDLNSLCKRYGITISH-----RSKHGALLDSHLLSDV---YIKMMVG---- 177
           ARR     R+++ +  ++ G   S+     R  H AL D+    DV    I  + G    
Sbjct: 168 ARRVL--GRDEVPN--RKLGTLASYFRTATRPTHRALDDAKATVDVLHGLIARLGGHRVD 223

Query: 178 --GSQINFGFKTNED----RFFKEEKKTVPNISLLKR--DKPLF 213
             G  I F           R   +    VP I + +   D+PL+
Sbjct: 224 TVGEAIEFARAVTPTQRRKRHLADGLPKVPGIYIFRAADDRPLY 267


>gi|89072880|ref|ZP_01159437.1| putative DNA polymerase III [Photobacterium sp. SKA34]
 gi|89051402|gb|EAR56857.1| putative DNA polymerase III [Photobacterium sp. SKA34]
          Length = 207

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 21/174 (12%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITD 67
           +V D ETTGL  ++ DR IEIGAV+L++    ++ FQ  + P  R +S  E     GI++
Sbjct: 11  VVLDFETTGLSPNQGDRAIEIGAVKLVNGEIVDQ-FQQLMNPGFRVSSFIEGYT--GISN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L+  P    +   F DF  + N   +AHNA FD  F++AEL  I +          ++
Sbjct: 68  NMLRTAPPCHEVMDAFADFIGDAN--LVAHNASFDQRFLDAELADIGR--YYTGTFTCSM 123

Query: 128 SIARRKHPSSRND-LNSLC-----KRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            IARR +  + N  L +L      K  G+       H AL DS + + +++ M+
Sbjct: 124 LIARRLYQHAPNHKLGTLVDFKHIKHNGVF------HRALADSEMTARLWLVML 171


>gi|257439598|ref|ZP_05615353.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
           A2-165]
 gi|257197965|gb|EEU96249.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
           A2-165]
          Length = 1417

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 8/166 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD ETTGLD   + + EIGAV ++   +    F  F+ P G+  +P+  +L GIT+E +
Sbjct: 399 VFDTETTGLDPGVEYLTEIGAV-IVRNGEVVEEFDTFVKP-GKPITPKITELTGITNEMV 456

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            D P        F  F + +    +AHNA  FD+ F+ A  +R +    +P+  IDTL++
Sbjct: 457 ADAPGEKEALEAFLRFADGRIL--VAHNAHAFDIRFLKAAAKR-SGISFEPT-YIDTLTM 512

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+  +P   N       ++ + +     H A  DS  L  ++  M+
Sbjct: 513 AQAMYPGLHNYKQGTINKH-LELPSYEAHRACEDSAALGRIFCVML 557


>gi|227510342|ref|ZP_03940391.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227189994|gb|EEI70061.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 945

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 9/153 (5%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKL 62
           +K    V DIETTG D S ++RII+     L+ + K   T+   + P  ++  PE  ++L
Sbjct: 3   SKTTYAVVDIETTGTDMSVDNRIIQFSCT-LVAHGKIVETYVSDINP--QREVPERIIQL 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT E LK  P+F  + S+ +   +     ++AHN  FD  F+N E QR+    LD   
Sbjct: 60  TGITPERLKKAPTFDQVSSKLYKLLS--GTVFVAHNVNFDFPFLNGEFQRVGYPELD-IE 116

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISH 154
            IDT+++++   P+ S   L  L   + I  +H
Sbjct: 117 AIDTVTLSQILLPTLSSYRLQDLSAYFNIIHNH 149


>gi|295398912|ref|ZP_06808894.1| DnaQ family exonuclease/DinG family helicase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978378|gb|EFG53974.1| DnaQ family exonuclease/DinG family helicase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 921

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 9/172 (5%)

Query: 6   KMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K R ++ D+ETTG +  K DRII++G V +++  +    F  F  P  R   P   +L  
Sbjct: 2   KDRFVIMDLETTGNVPKKGDRIIQLGMV-VVENGQIIERFSSFFNPE-RDIPPFVQQLTN 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I ++ + D P F+   ++  D    Q + ++AHN  FD+ F+  EL      P      I
Sbjct: 60  INEQMVADAPVFAEEAAKVVDML--QQSYFVAHNVSFDLQFLQEELHMAGFPPFS-GPTI 116

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+ +AR   P + +  L  L K   + I+H   H A  D+ + + ++I ++
Sbjct: 117 DTVELARIVFPDAESYKLADLAKL--LCIAHDQPHHADSDAEVTAKLFIALL 166


>gi|172040912|ref|YP_001800626.1| putative exonuclease [Corynebacterium urealyticum DSM 7109]
 gi|171852216|emb|CAQ05192.1| putative exonuclease [Corynebacterium urealyticum DSM 7109]
          Length = 270

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 6/117 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+ETTGL+   DR+IEI AV  +++     +F   L P       E+  ++G+ D
Sbjct: 90  RCAVVDLETTGLEPATDRVIEI-AVLTVEHGSIVGSFHCLLNPECSIPG-ESSNINGLRD 147

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           + + + P+F+ +  E        N   + HN KFDVGF+ AE  R+     D +R++
Sbjct: 148 DDVANSPTFAEVAQELLPHV--LNRTLVGHNVKFDVGFLAAEYARLGH--ADAARVL 200


>gi|15616394|ref|NP_244699.1| hypothetical protein BH3832 [Bacillus halodurans C-125]
 gi|10176457|dbj|BAB07551.1| BH3832 [Bacillus halodurans C-125]
          Length = 265

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 12/191 (6%)

Query: 5   NKMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPE-ALK 61
            K+  +VFD+ET+G    + DRI+ IGAV+++  + +   TF  +   +     PE  L+
Sbjct: 76  EKLPVVVFDLETSGFYPDQGDRILSIGAVKVVGLTIQEEETF--YSVVHTDTVPPENILE 133

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G++ E L+  P  +S+   F+ F   +++  +AH+A  +  F++    +  K P +  
Sbjct: 134 LTGLSVEELEAAPPLTSVLESFYAFI--RHSTLVAHHASHEKAFMSHVTWQTMKLPFE-H 190

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           R+IDT  + +   P     L+  C  Y I + +R  H A  DS + + ++I  +    + 
Sbjct: 191 RVIDTSFLTKIVAPQELVTLDDCCAYYSIPVQNR--HHAFEDSLMTAKLWIAAIAAAREA 248

Query: 182 NFGFKTNEDRF 192
             GF+T  D +
Sbjct: 249 --GFETLRDIY 257


>gi|317128725|ref|YP_004095007.1| exonuclease RNase T and DNA polymerase III [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473673|gb|ADU30276.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           cellulosilyticus DSM 2522]
          Length = 242

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 9/163 (5%)

Query: 5   NKMRKIVFDIETTGLDSKN-DRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +K+  +VFD+ETTG    N DRI+ IG +++  D    + TF   +  NG   S E  KL
Sbjct: 53  SKLDVVVFDLETTGFYPNNGDRILSIGGIKVKGDKVIDSETFYSLINSNGGV-SEEITKL 111

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             IT++ L + P  + +   F+ F +      +AH+A  +  F+      I K   +  R
Sbjct: 112 TNITEKDLIEAPPINDVLQNFYTFMS--GCTLVAHHANHERSFMQHMTWSILKSRFE-HR 168

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164
           IIDT  + +   P+     L+  C  YGITI  + +H AL D+
Sbjct: 169 IIDTAFLTKIVEPNKNLVSLDECCDHYGITI--KKRHHALYDA 209


>gi|312110481|ref|YP_003988797.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y4.1MC1]
 gi|311215582|gb|ADP74186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y4.1MC1]
          Length = 921

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 9/172 (5%)

Query: 6   KMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K R ++ D+ETTG +  K DRII++G V +++  +    F  F  P  R   P   +L  
Sbjct: 2   KDRFVIMDLETTGNVPKKGDRIIQLGMV-VVENGQIIERFSSFFNPE-RDIPPFVQQLTN 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I ++ + D P F+   ++  D    Q + ++AHN  FD+ F+  EL      P      I
Sbjct: 60  INEQMVADAPVFAEEAAKVVDML--QQSYFVAHNVSFDLQFLQEELHMAGFPPFS-GPTI 116

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+ +AR   P + +  L  L K   + I+H   H A  D+ + + ++I ++
Sbjct: 117 DTVELARIVFPDAESYKLADLAKL--LCIAHDQPHHADSDAEVTAKLFIALL 166


>gi|226312093|ref|YP_002771987.1| ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
 gi|226095041|dbj|BAH43483.1| probable ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
          Length = 967

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG   +  D II+IGAV + D  +   +F   + P G+   P   +L GIT
Sbjct: 3   RLLVVDFETTGSHPRQGDSIIQIGAVAI-DDGQITESFSTLIHP-GQDIPPFITQLTGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E + D PS   +F +F    + +   ++AHNA FD+ F+   L        D   ++DT
Sbjct: 61  NEMVADAPSLEEVFPDFLRLLDGR--AFVAHNASFDLQFLQEALLSQGYYAFD-GYVLDT 117

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + ++R   P   +  L  L     + I H + H A  D+   + +++ ++
Sbjct: 118 VELSRVLLPMQNSYRLGELASE--LEIEHDNPHQADSDALATAQLFLHLL 165


>gi|260587424|ref|ZP_05853337.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
           20583]
 gi|331083705|ref|ZP_08332816.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542291|gb|EEX22860.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
           20583]
 gi|330403916|gb|EGG83468.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 236

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 11/160 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65
           M  +  D+ETTGL+   DRIIEIGAV++ +         +    N +   P+ + +L GI
Sbjct: 2   MEYVALDLETTGLEPSKDRIIEIGAVKVRNKEVVGEYGTLI---NPQMEIPDRITELTGI 58

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +++ ++ KP  +    E  DF  E     + HN  FD  F+    Q +N   +   + +D
Sbjct: 59  SNDMVQGKPLIAQALGELLDFCEE--LPLLGHNLMFDYSFVKH--QAVNAGMVFEKKGMD 114

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           TL +AR   P      L +L   Y   I  +  H AL D+
Sbjct: 115 TLKLARALLPELPSRSLQNLRMHY--EIPQKDAHRALEDA 152


>gi|303238571|ref|ZP_07325105.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
 gi|302593969|gb|EFL63683.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
          Length = 1446

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 13/151 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG     ++I E+G ++L D  K    F  F+ P  +      +++  ITD  +
Sbjct: 425 VLDLETTGFSPLTEKITEVGIMKLKD-GKVIDQFSCFVNPE-KPIPARVVEVTNITDYMV 482

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTLS 128
           +D  +   +F +  +F   + +  +AHNA+FD+GF+  NA++   N D       +DTLS
Sbjct: 483 QDAETIEKVFPKMLEFI--EGSVLVAHNAEFDIGFLKHNAKVLGYNFD----FTYLDTLS 536

Query: 129 IARRKHPSSRN-DLNSLCKRYGIT--ISHRS 156
           +A+   P  ++  L  + K  GI   ++HR+
Sbjct: 537 LAKEIFPDYKSYKLGRIAKNLGIKVDVAHRA 567


>gi|313202457|ref|YP_004041115.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688]
 gi|312441773|gb|ADQ85879.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688]
          Length = 473

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 9/161 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+ETTG     DRI EI  +   +  + +R +Q  + P      P   +L GI D  
Sbjct: 6   VLLDLETTGATPLVDRITEIALIRFENGQEVSR-WQTLVNPE-TAIPPFIQRLTGIDDGM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P F  +  E  D    + A   AHN +FD GF+  E +RI  D     +++ T+ +
Sbjct: 64  VATAPHFKEVAGELLDHL--EGAVLCAHNVRFDHGFLKNEFKRIGIDLRQ--KVLCTVKL 119

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           +R+ +P  R + L+S+ +R+ +     ++H A+ D   L D
Sbjct: 120 SRKLYPQHRSHSLDSIIERHSLQCG--ARHRAMGDVVALVD 158


>gi|313115651|ref|ZP_07801107.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622037|gb|EFQ05536.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 1417

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 16/194 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD ETTGLD   + + EIGAV ++   +    F  F+ P G+  +P+  +L GIT+E +
Sbjct: 399 VFDTETTGLDPGVEYMTEIGAV-IVKNGEVVEEFDTFVKP-GKPITPKITELTGITNEMV 456

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            D P        F  F  ++    + HN   FD+ F+ A  +R +   L+P+  IDTL++
Sbjct: 457 ADAPGEKEALEAFLKFAGDRIL--VGHNVHAFDMRFLRAAAKR-SGIKLEPT-YIDTLTM 512

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH--------LLSDVYIKMMVGGSQI 181
           A+  +P   N       ++ + +     H A  DS         +L+D+  K +   S+I
Sbjct: 513 AQAMYPGLHNYKQGTINKH-LELPAYEAHRACEDSAALGRIFGVMLNDLKEKQVAKVSEI 571

Query: 182 NFGFKTNEDRFFKE 195
           N G   N +   K+
Sbjct: 572 NTGLGGNREVLKKK 585


>gi|170288240|ref|YP_001738478.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2]
 gi|170175743|gb|ACB08795.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2]
          Length = 186

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 17/179 (9%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEAL-KLHGITD 67
           V D ETTG D    DRI+EI AV +       N+ F   + P  R   P  + K+HGI++
Sbjct: 10  VVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNP--RIRIPALIQKVHGISN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +++ P   ++++ F D+   +    + HNA FD+ F++   +     P+  +  IDTL
Sbjct: 68  MDIEEAPDMDAVYNLFRDYV--KGTVLVFHNANFDLTFLDMMAKETGNFPIT-NPYIDTL 124

Query: 128 SIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQIN 182
            ++      P S   L  LC+R GI  + R  H AL D+ + + V++K++  +G +++N
Sbjct: 125 DLSEEIFGRPHS---LKWLCERLGIKTTIR--HRALPDALVTARVFVKLVEFLGENRVN 178


>gi|315648491|ref|ZP_07901590.1| hypothetical protein PVOR_24689 [Paenibacillus vortex V453]
 gi|315276185|gb|EFU39531.1| hypothetical protein PVOR_24689 [Paenibacillus vortex V453]
          Length = 246

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 10/174 (5%)

Query: 5   NKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +++  +VFD+ETTG + ++ D I+  GAV ++      +     +  +G    P   +L 
Sbjct: 57  DELEVVVFDLETTGFNHQHGDEILSFGAVRVIGEQVIEQESFHMIVNSGSPVPPFITELT 116

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   +   P       +F  F   +    +AH A  D GF+NA L + +K  L   R+
Sbjct: 117 GITQHMVDAAPPLMEGLHDFMAFVGGR--VLVAHAAAHDRGFLNAALWKTSKVRLT-HRL 173

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIK 173
           +DT+ +A+R +P   +  L+ L +   I +  R  H AL D+ + + +   YIK
Sbjct: 174 LDTMMLAQRLYPEQTDYSLDELLRNCSIPVEGR--HHALSDARMTARLWADYIK 225


>gi|227513350|ref|ZP_03943399.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           buchneri ATCC 11577]
 gi|227083223|gb|EEI18535.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           buchneri ATCC 11577]
          Length = 945

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 9/153 (5%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKL 62
           +K    V DIETTG D S ++RII+     L+ + K   T+   + P  ++  PE  ++L
Sbjct: 3   SKTTYAVVDIETTGTDMSVDNRIIQFSCT-LVAHGKIVETYVSDINP--QREVPERIIQL 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT E LK  P+F  + S+ +   +     ++AHN  FD  F+N E QR+    LD   
Sbjct: 60  TGITPERLKKAPTFDQVSSKLYKLLS--GTVFVAHNVNFDFPFLNGEFQRVGYPELD-IE 116

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISH 154
            IDT+++++   P+ S   L  L   + I  +H
Sbjct: 117 AIDTVTLSQILLPTLSSYRLQDLSTYFNIIHNH 149


>gi|226360268|ref|YP_002778046.1| hypothetical protein ROP_08540 [Rhodococcus opacus B4]
 gi|226238753|dbj|BAH49101.1| putative DNA polymerase III epsilon subunit [Rhodococcus opacus B4]
          Length = 588

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 18/174 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG     D I EIGAV++             L   GR   P  +++ GIT   
Sbjct: 25  VVVDLETTGARPGEDAITEIGAVKIRGGEVIAE--MATLVDPGRSIPPHIVEITGITTAM 82

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P    +   F +F   + A  +AHNA FD GF+ A     +  P     ++ T+ +
Sbjct: 83  VIDAPRIERVLPAFLEF--ARGAVLVAHNAPFDTGFLKAAAAATDT-PWPKFTVLCTVKL 139

Query: 130 ARR-----KHPSSRNDLNSLCKR--YGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ARR     + PS +  L+SL +    G T +HR    AL D+    DV   ++ 
Sbjct: 140 ARRVLTRDEAPSVK--LSSLARLLDVGTTPTHR----ALDDARATVDVLHALIA 187


>gi|171317951|ref|ZP_02907125.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171096851|gb|EDT41725.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 205

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL     DR  EI  + L D    +R +Q  +   GR+   + + L GIT+E 
Sbjct: 6   VLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLM-NAGRRIPSDVVALTGITNEM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  S +  E   F    N   +AHNA FD  F  AEL  +            T+ +
Sbjct: 64  IASAPPVSQVMKEAAAFVG--NHPVVAHNAGFDKRFWQAELGMLGMAA--EHAFACTMLV 119

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ARR +P +R+  L+SL     +  + R+ H A++D+ + S ++ ++
Sbjct: 120 ARRIYPHARSHRLSSLADMLRLPQTGRA-HRAMVDAEIASHLWCRL 164


>gi|194017045|ref|ZP_03055658.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           pumilus ATCC 7061]
 gi|194011651|gb|EDW21220.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           pumilus ATCC 7061]
          Length = 930

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V DIETTG    K D+II+I AV +++  +    +  ++ P G+       +L GI 
Sbjct: 5   RFVVVDIETTGNSPKKGDKIIQIAAV-VIENGQIVERYSKYVNP-GKAIPGFIEQLTGIQ 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              + D   F  I  E +D    Q A ++AHN  FD+ F+N EL+   K+ LD    IDT
Sbjct: 63  QHMVDDAVFFEDIAQEVYDLI--QGAYFVAHNVHFDLNFLNDELKACGKNELD-VLAIDT 119

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + I+R  +P      L  L +   + + H   H A  D+ + + +++ ++
Sbjct: 120 VEISRILYPELEGYKLTELSEE--LMLPHDHPHRADSDAEVTAMLFLTLL 167


>gi|115359655|ref|YP_776793.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
 gi|172064467|ref|YP_001812118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
 gi|115284943|gb|ABI90459.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
 gi|171996984|gb|ACB67902.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 205

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL     DR  EI  + L D    +R +Q  +   GR+   + + L GIT+E 
Sbjct: 6   VLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLM-NAGRRIPSDVVALTGITNEM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  S +  E   F    N   +AHNA FD  F  AEL  +            T+ +
Sbjct: 64  IASAPPVSQVMKEAAAFVG--NHPVVAHNAGFDKRFWQAELGMLGMAA--EHAFACTMLV 119

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ARR +P +R+  L+SL     +  + R+ H A++D+ + S ++ ++
Sbjct: 120 ARRIYPHARSHRLSSLADMLRLPQTGRA-HRAMVDAEIASHLWCRL 164


>gi|227524493|ref|ZP_03954542.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088363|gb|EEI23675.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           hilgardii ATCC 8290]
          Length = 945

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 9/153 (5%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKL 62
           +K    V DIETTG D S ++RII+     L+ + K   T+   + P  ++  PE  ++L
Sbjct: 3   SKTTYAVVDIETTGTDMSVDNRIIQFSCT-LVAHGKIVETYVSDINP--QREVPERIIQL 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT E LK  P+F  + S+ +   +     ++AHN  FD  F+N E QR+    LD   
Sbjct: 60  TGITPERLKKAPTFDQVSSKLYKLLS--GTVFVAHNVNFDFPFLNGEFQRVGYPELD-IE 116

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISH 154
            IDT+++++   P+ S   L  L   + I  +H
Sbjct: 117 AIDTVTLSQILLPTLSSYRLQDLSTYFNIIHNH 149


>gi|254469279|ref|ZP_05082684.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Pseudovibrio sp. JE062]
 gi|211961114|gb|EEA96309.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Pseudovibrio sp. JE062]
          Length = 471

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 11/170 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGL    D I++IGAV +++       T    + P GR     +  +H ITD+
Sbjct: 280 VVFDTETTGLMPNKDEIVQIGAVRVVNRRIIPGETVDQLVNP-GRPIPAASTGVHRITDD 338

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            + + P   +  S+F  F   ++A  +AHNA FD+ F    LQR       +    I+DT
Sbjct: 339 MVVNAPDPVTATSDFHVF--AKDAVIVAHNAPFDMAF----LQRYGHMSGHVWDHPILDT 392

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + ++     + + + L++LC R  I I    +H AL D+   +    K++
Sbjct: 393 VLLSAVVFGAEQEHTLDALCARLDIEIPEALRHTALGDAQATAQALCKLL 442


>gi|110634574|ref|YP_674782.1| DNA polymerase III, epsilon subunit [Mesorhizobium sp. BNC1]
 gi|110285558|gb|ABG63617.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1]
          Length = 498

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 59/107 (55%), Gaps = 4/107 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            + FD ETTGLD++  R++++  V +   + + + +F+  + P G    P+++++HGITD
Sbjct: 15  AVAFDTETTGLDTRTARVVQVAGVAISRGAVRQDESFESLVHP-GMSIPPDSIRIHGITD 73

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             L++ P+F++++  F  F   +    I +   FD+  I  E  R  
Sbjct: 74  GMLREAPAFAAVWRSFEMFRGVR--PLIGYAVGFDLAIIEREAARAG 118


>gi|238917782|ref|YP_002931299.1| DNA polymerase [Eubacterium eligens ATCC 27750]
 gi|238873142|gb|ACR72852.1| DNA polymerase [Eubacterium eligens ATCC 27750]
          Length = 233

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 79/171 (46%), Gaps = 23/171 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  DIETTGL+   DRIIE+G   + D   T + +   + P G   S    +L GI +
Sbjct: 4   RYVALDIETTGLNPAVDRIIEVGMARVEDGQITQK-YSTLVYP-GISVSERITELTGIHN 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGF-----INAELQRINKDPLDP 120
           E L  KP    I  E  +F      +W  + HN  FD  F     +N  L  IN D    
Sbjct: 62  EELTGKPRIEDIIGEITEFI----GDWPVLGHNVIFDFSFLKKAAVNNGLT-INDDG--- 113

Query: 121 SRIIDTLSIARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLLS 168
              IDTL +ARR  P   +  L+ LC+ + I    SHR+   A+  S L +
Sbjct: 114 ---IDTLKLARRILPEVEHKSLSFLCQYFNIDPGRSHRAYDDAVSASLLYA 161


>gi|302525360|ref|ZP_07277702.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
 gi|302434255|gb|EFL06071.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
          Length = 572

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 12/184 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG     D I EIGAV+ +   +    F   + P G    P+ ++L GIT   
Sbjct: 27  VVFDLETTGTKPGPDGITEIGAVK-VRAGQVLGEFATLVNP-GTPIPPQIVELTGITQAM 84

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P    +   F +F +   A  +AHN+ FD  F+ A  +        P+ ++ T+ +
Sbjct: 85  VYDAPRIERVLPAFLEFIS--GAVLVAHNSGFDTSFMKAACEGHGYVWPRPT-VVCTVKL 141

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFGFK 186
           ARR  P               +    R  H AL D+   +DV   ++  VG    N G  
Sbjct: 142 ARRVIPREEARSYRLSSLSMLLGSRTRPTHRALDDARATTDVLHALLERVG----NLGVH 197

Query: 187 TNED 190
           T E+
Sbjct: 198 TVEE 201


>gi|297621916|ref|YP_003710053.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044]
 gi|297377217|gb|ADI39047.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044]
          Length = 249

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 88/181 (48%), Gaps = 15/181 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64
           K + +  D ETTGLD K DR+IE+  V      K +  F+  + P   ++ PE ++ +H 
Sbjct: 6   KQQFVCLDCETTGLDPKEDRVIEVACVAFTLEEKLD-AFETLIDPE--RDIPETSIAIHH 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDPSR 122
           IT + +  KP    +  +  DF        + H  +FD+  I+    R  I+K+ L  + 
Sbjct: 63  ITQKMVAGKPKVKEVLPKVLDFVGSHI--IVGHGIQFDIEAISHSCDRAGISKN-LRDNP 119

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            IDTL +AR    S  N L  L K + I   I+HR    A+ D  +  +V+ +++ G S 
Sbjct: 120 FIDTLRMARLYGESPINSLEHLRKHFNIESEIAHR----AMSDVMVNIEVFKQLLKGYSS 175

Query: 181 I 181
           +
Sbjct: 176 L 176


>gi|255030410|ref|ZP_05302361.1| DNA polymerase III PolC [Listeria monocytogenes LO28]
          Length = 459

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 5/119 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +
Sbjct: 346 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 403

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL +
Sbjct: 404 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLEL 459


>gi|297566609|ref|YP_003685581.1| DNA polymerase III subunit epsilon [Meiothermus silvanus DSM 9946]
 gi|296851058|gb|ADH64073.1| DNA polymerase III, epsilon subunit [Meiothermus silvanus DSM 9946]
          Length = 252

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 14/180 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL +  + IIEI  + L    +  + FQ F+ P G    P   +L GIT   
Sbjct: 80  VVLDLETTGLSALENEIIEIAFIRL--EGEKRQVFQRFVNP-GSPIPPFISRLTGITHRD 136

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+  P   ++  E       +++  I  NA FD+GF+     R+    +D + +IDT++ 
Sbjct: 137 LEGAPDVYTVLEEALPLL--EDSVLIIQNAPFDLGFLRPRFLRLGYK-MD-NEVIDTVAW 192

Query: 130 ARRKHPS-SRNDLNSLCKRYGI-TISHRSKHGALLD---SHLLSDVYIKMMVGGSQINFG 184
           ARR  P  S+  L+ L   + + TI   S+H AL D   + L++     M+  G  +  G
Sbjct: 193 ARRALPGLSKRGLDHLAWAFDLDTIV--SRHRALGDVEATLLVAKEMYYMLTAGKPLALG 250


>gi|330816132|ref|YP_004359837.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
 gi|327368525|gb|AEA59881.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
          Length = 203

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 13/168 (7%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL  ++ DR  EI  V L D    +R +Q  +   GR+   + + L GIT++ 
Sbjct: 6   VLDFETTGLSPAQGDRATEIAIVLLRDGEIVDR-YQSLMN-AGRRIPSDVVALTGITNDM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDTL 127
           +   P  +S+  E   F    N   +AHNA FD  F  +EL  +      PS      TL
Sbjct: 64  IASAPPVASVMREAAAFVG--NHPVVAHNAGFDRRFWQSELGLLGV----PSAHEFACTL 117

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +ARR +P +  + L+SL +   +  + R+ H A++D+ + S ++ ++
Sbjct: 118 LVARRIYPQAPSHRLSSLVEMLSLPKTGRA-HRAMVDAEMASHLWCRL 164


>gi|225374652|ref|ZP_03751873.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM
           16841]
 gi|225213511|gb|EEG95865.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM
           16841]
          Length = 228

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 11/165 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL-HGITDE 68
           ++FD+ETTG     D +IEI AV++    K    F   +  N ++  P A  + + I+DE
Sbjct: 18  VLFDLETTGTSCIYDEVIEISAVKVRS-GKVVEEFSQLV--NPKRPIPYAASMVNHISDE 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTL 127
            + ++P F  +  EF  F  +     + HN + FD+ F+  + +R+ +  L  +  +DTL
Sbjct: 75  MVANEPDFGQVLPEFLTFAGDDI--LVGHNIQTFDMKFLYRDCERLFQQKLT-NDYVDTL 131

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +A+   P  R+  L+ L + YG  IS R  H AL D  +   V+
Sbjct: 132 RVAKLCFPEWRHRRLSDLAEHYG--ISTRGAHRALTDCKMNQQVF 174


>gi|157692739|ref|YP_001487201.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus pumilus SAFR-032]
 gi|157681497|gb|ABV62641.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032]
          Length = 930

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V DIETTG    K D+II+I AV +++  +    +  ++ P G+       +L GI 
Sbjct: 5   RFVVVDIETTGNSPKKGDKIIQIAAV-VIENGQIVERYSKYVNP-GKPIPGFIEQLTGIQ 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              + D   F  I  E +D    Q A ++AHN  FD+ F+N EL+   K+ LD    IDT
Sbjct: 63  QHMVDDAVFFEDIAQEVYDLI--QGAYFVAHNVHFDLNFLNDELKACGKNELD-VLAIDT 119

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + I+R  +P      L  L +   + + H   H A  D+ + + +++ ++
Sbjct: 120 VEISRILYPELEGYKLTELSEE--LMLPHDHPHRADSDAEVTAMLFLTLL 167


>gi|46445870|ref|YP_007235.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399511|emb|CAF22960.1| putative DNA polymerase III epsilon chain [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 249

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 13/160 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-AL 60
           I KNK   I  D ETTGLD + DRIIE+ AV   D ++     +  + P      PE ++
Sbjct: 4   IEKNKF--ICIDCETTGLDPQQDRIIEV-AVMCFDGNQVYAQMESLINPEC--PIPETSI 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--L 118
            +H IT + +KDKP+ + +  +  +  ++     I H   FD+  +    +R +  P  +
Sbjct: 59  AIHHITQDMVKDKPTINHVLPQILELISDHII--IGHGVGFDIEILAVAAER-HGIPCKI 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRS 156
             +R +DTL +AR    S  N L  L K + I +  +HR+
Sbjct: 116 RKNRFLDTLRMARLYGESPVNSLEYLRKHFNIPLEGAHRA 155


>gi|146293210|ref|YP_001183634.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32]
 gi|145564900|gb|ABP75835.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32]
          Length = 212

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 7/168 (4%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL  ++  R IEIGAV L++     + F   + P G + S       GI+++
Sbjct: 14  VVLDFETSGLSPNQGARAIEIGAV-LIENGVITQRFSELMDP-GFRISSFIEDYTGISNQ 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++      + + F DF  + +   +AHNA FD  F++AE   I+ +     +   +L 
Sbjct: 72  MLRNAAPCHEVMARFADFIGDNH--LVAHNAAFDQRFLDAEFAHIHHE--YQGQFACSLL 127

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +ARR +P + N   +   RY    ++ + H AL D+ +   +++ M+ 
Sbjct: 128 LARRLYPLASNHQLATLVRYKQLPNNGTFHRALADAEMTGHLWLAMLA 175


>gi|304310986|ref|YP_003810584.1| hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1]
 gi|301796719|emb|CBL44931.1| Hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1]
          Length = 300

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 14/168 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ETTGL++ +  I EIGAV+     +    F++F  P G        +L GITDE 
Sbjct: 36  IAIDFETTGLEASSAAITEIGAVKFKISGEIVDQFEMFAYP-GTPIPVRIQELTGITDEM 94

Query: 70  LK--DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +   + P F  ++ +F D+ +  N  +IAHNA F+  F+ A  ++  + P      IDTL
Sbjct: 95  VTGCEPPLF--VWKKFLDWADGANT-FIAHNAPFEARFVRALYEKEGEMP--NIYFIDTL 149

Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            I+R + P  S   L +L K           H AL D+   S +Y ++
Sbjct: 150 QISRNRLPEESSYSLKNLVK-----FKEGEPHRALADAKACSTLYCRL 192


>gi|296135545|ref|YP_003642787.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
 gi|295795667|gb|ADG30457.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
          Length = 469

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 9/159 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+ETTG +   DRI E+ AV  ++  +    +   L P G++  P   +L GI D  
Sbjct: 6   VLLDLETTGSNPVLDRITEV-AVMRVEQGEVVAKWSRLLNP-GQRIPPFIQQLTGIDDAM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P+F  +  E     +   A  +AHN +FD GF+     R   D     + + T+ +
Sbjct: 64  VAGAPAFGEVLPELLAVLD--GAVLVAHNVRFDHGFLKQAAAREGVD--LRVKTLCTVRL 119

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLL 167
           +R+ +P +R + L+++ +R+G+  +  ++H A+ D  LL
Sbjct: 120 SRKLYPQARGHGLDAIMRRHGLHTT--ARHRAMGDVELL 156


>gi|300784117|ref|YP_003764408.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
 gi|299793631|gb|ADJ44006.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
          Length = 567

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 23/207 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG       I EIGAV++    +    F   + P G    P+ + L GIT   
Sbjct: 23  VVFDLETTGAPPGPSGITEIGAVKVRG-GEVLGEFATLVNP-GAPIPPQIVSLTGITQAM 80

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIIDTLS 128
           + D P    +   F +F     A  +AHN+ FD   + A  +      + P + ++ T+ 
Sbjct: 81  VYDAPPIEEVLPAFLEFIG--GAVLVAHNSGFDTSHMRAACE--GHGYVWPKATVVCTVR 136

Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +ARR  P     R +L +L   +G     R  H AL D+    DV   ++  VG    N 
Sbjct: 137 LARRVVPRDEVGRYNLTALALLFGART--RPTHRALDDARATVDVLHGLLERVG----NL 190

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDK 210
           G  +      +E    +P +++ +R K
Sbjct: 191 GVHS-----LEELMGYLPEVTVAQRAK 212


>gi|27366371|ref|NP_761899.1| ribonuclease T [Vibrio vulnificus CMCP6]
 gi|320156882|ref|YP_004189261.1| ribonuclease T [Vibrio vulnificus MO6-24/O]
 gi|29611837|sp|Q8D882|RNT_VIBVU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|27362572|gb|AAO11426.1| ribonuclease T [Vibrio vulnificus CMCP6]
 gi|319932194|gb|ADV87058.1| ribonuclease T [Vibrio vulnificus MO6-24/O]
          Length = 217

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D +       T    + P +G     EAL+ +G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFDGANLEKEALEFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   +      E +     EQ A        +AHNA FD+ F+NA  +R  +
Sbjct: 80  IRDPFSPLRGAVTEQEALKEIYKLIRREQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++   +   +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSALYDTEKTAELFCG 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|329942731|ref|ZP_08291510.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Chlamydophila psittaci Cal10]
 gi|332287328|ref|YP_004422229.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
 gi|313847912|emb|CBY16907.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci RD1]
 gi|325506611|gb|ADZ18249.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
 gi|328814991|gb|EGF84980.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Chlamydophila psittaci Cal10]
 gi|328914571|gb|AEB55404.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC]
          Length = 228

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 78/168 (46%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG     DRIIEI A       KT  +F  ++ P       EA K+HGIT   
Sbjct: 5   IFYDTETTGTQIDKDRIIEIAAYN----HKTKESFVTYVNPEIPIPE-EASKIHGITTST 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +   P F   +  F DF   + A  +AHN   FD   +  E +R    PL   + ID+L 
Sbjct: 60  VISAPKFPEAYKHFCDFCGNE-AVLVAHNNDSFDFPLLEKECRRHALPPLS-LKTIDSLK 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            A++  P   +++L  L + YG   +    H AL D   L +V+  ++
Sbjct: 118 WAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLHNVFSALI 163


>gi|288556130|ref|YP_003428065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus pseudofirmus OF4]
 gi|288547290|gb|ADC51173.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus pseudofirmus OF4]
          Length = 940

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D+ETTG   +K DRII+IGAV +++  +    F  F+ P   +  P   +L GI 
Sbjct: 4   RFIVVDVETTGHSVAKGDRIIQIGAV-VIENGEIIERFASFVNPE-VEIPPFIEELTGIN 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++  P+F  +  E    F  +N  ++AHN  FD+ F+  + + I  +     +  DT
Sbjct: 62  QAMVEHAPTFKELAVELLPLF--ENVGFVAHNVPFDLSFLKNQFELIG-EKFPKMKCYDT 118

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + ++R   P   +  L  L   + + +SH   H A  D+ + +++++ ++
Sbjct: 119 VELSRMLLPKEESYKLGHLA--FSLGLSHDRPHQADSDAEVTAEIFLYLL 166


>gi|323342398|ref|ZP_08082630.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463510|gb|EFY08704.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 200

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 26/174 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS--PEALKLHGITDE 68
           V D+ETTG  +K + I E+ A++  +Y + +  F   + P+   NS  P  ++L GIT+E
Sbjct: 17  VIDLETTGRSNKFEDITELSAIKYRNYKQVD-AFSTLVKPD---NSILPFVVELTGITEE 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQ----RINKDPLDPSRI 123
            + D P    +  +F DF        + HN  FD G + +A L     R++ D       
Sbjct: 73  MVSDAPKIDQVIKQFVDFIGTD--VILGHNVMFDYGLVYDAYLATVGLRMHND------Y 124

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKM 174
           +DTL ++R  +  S+N  L +LC  + +   + HR     L      ++VYIKM
Sbjct: 125 VDTLRVSRLLNKDSKNHKLETLCAYFDVERLVGHRGSEDCLQT----AEVYIKM 174


>gi|197337514|ref|YP_002157585.1| DNA polymerase III epsilon subunit [Vibrio fischeri MJ11]
 gi|197314766|gb|ACH64215.1| DNA polymerase III epsilon subunit [Vibrio fischeri MJ11]
          Length = 212

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 13/170 (7%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  ++ DR IEIGAV+L +    +R FQ  + P G + S       GI++ 
Sbjct: 16  VVLDFETTGLSPNQGDRAIEIGAVKLENGVVVDR-FQGLMNP-GFRVSSFIENYTGISNR 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D  S   + +EF +F   Q    +AHNA FD  F++ EL  I ++  D       L 
Sbjct: 74  MLADAASCDEVMNEFANFI--QGCNLVAHNASFDKRFLDGELALIQRE-YDGDFACSLLV 130

Query: 129 IARRKHPSSRNDLNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKMM 175
             R    +S + L  L   + I    + HR    AL D+ + + +++ ++
Sbjct: 131 SRRLTQEASSHKLGDLVAYHQIENDGVFHR----ALADAEVTASLWLVLL 176


>gi|148269564|ref|YP_001244024.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1]
 gi|147735108|gb|ABQ46448.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1]
          Length = 186

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 17/179 (9%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEAL-KLHGITD 67
           V D ETTG D    DRI+EI AV +       N+ F   + P  R   P  + K+HGI++
Sbjct: 10  VVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNP--RIRIPALVQKVHGISN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +++ P   ++++ F D+   +    + HNA FD+ F++   +     P+  +  IDTL
Sbjct: 68  MDIEEAPDMDAVYNLFRDYV--KGTVLVFHNANFDLTFLDMMAKETGNFPIT-NPYIDTL 124

Query: 128 SIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQIN 182
            ++      P S   L  LC+R GI  + R  H AL D+ + + V++K++  +G +++N
Sbjct: 125 DLSEEIFGRPHS---LKWLCERLGIKTTIR--HRALPDALVTARVFVKLVEFLGENRVN 178


>gi|88855710|ref|ZP_01130373.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
 gi|88815034|gb|EAR24893.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
          Length = 417

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL    +DR++E+  V L         ++  + P GR   P+  ++H I    
Sbjct: 8   VIDFETTGLFAGGHDRVVEVAVVHLDAQGTVEGRWETLVNP-GRDLGPQ--RIHQIRASD 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+F  I  +  D    +    +AHNA FD+ F+ AEL+R           + T+ +
Sbjct: 65  IVDAPAFEHIAGQLVDLL--EGRVLVAHNASFDLKFLVAELERTAAWMSTDFVSLCTMQL 122

Query: 130 ARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIK 173
           AR   P +   L   C    I +  +HR+   A   + LL+  YI+
Sbjct: 123 AREYLPGAGRALADCCAALDIQLDDAHRASADAFATAQLLA-AYIE 167


>gi|309811312|ref|ZP_07705099.1| exonuclease [Dermacoccus sp. Ellin185]
 gi|308434619|gb|EFP58464.1| exonuclease [Dermacoccus sp. Ellin185]
          Length = 221

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 7/150 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+GLD    R+IE+   +L       R +   +   G       + +HG++D  +
Sbjct: 17  VVDVETSGLDPLRHRVIEVAVTQLTPSGGLEREWSSLVRARGGTGP---VHIHGLSDYDV 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D P F+ +  E  +  + +    +AHNA FD  F+ AE +R  ++ L  S  + T  +A
Sbjct: 74  RDAPGFADLVDELSELLDGRIL--VAHNAAFDWAFLAAEARRAGRE-LPVSERLCTWHLA 130

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHG 159
           R  + P+    L +L + + I + +  + G
Sbjct: 131 RGLELPTDNLRLGTLAEYWSIPVENAHRAG 160


>gi|322380763|ref|ZP_08054869.1| DNA polymerase III subunit epsilon [Helicobacter suis HS5]
 gi|321146767|gb|EFX41561.1| DNA polymerase III subunit epsilon [Helicobacter suis HS5]
          Length = 219

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 13/157 (8%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           DIETTG   +N  +IEI A+        +   +  R+F   +  +  +  P+  +L G++
Sbjct: 40  DIETTGSKPENSSMIEIAALLYEPPKNPMHKGQIIRSFSSLI--HCLEVPPKITELTGLS 97

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + LK+ P   ++  +F  F   Q+  ++AHNA FD  FI+A   ++    L  +++  T
Sbjct: 98  TDDLKEAPPLEAVLQDFKLFI--QDHIFVAHNADFDFHFISACCAQVLDSALSNAKLC-T 154

Query: 127 LSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGAL 161
           L++AR+  PS R+ L  L    G  I ISHR+   AL
Sbjct: 155 LNLARKCIPSPRHGLQFLNTFLGLDIPISHRAYADAL 191


>gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
           43183]
 gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
           43183]
          Length = 328

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+GL     R++ +  + L         F   L P      P  + +HG+T E L
Sbjct: 18  VVDVETSGLRPDRHRVLSLAVLTLRPDGHLVEEFSTLLDPG---CDPGPVHIHGLTPERL 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P+F  +     +  + +    +AHNA FD  F+  E  R     L   + + TL++ 
Sbjct: 75  RGAPTFDRVAERVAELLSGRV--MVAHNAAFDYAFLAHEFGRAGLH-LPVEQRLCTLALG 131

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           RR   P+    L++L   YG+   HR+ H AL D+ +L+ V
Sbjct: 132 RRIGLPTPDLRLSTLAAHYGVP-QHRA-HDALDDARVLAGV 170


>gi|325681442|ref|ZP_08160968.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
           albus 8]
 gi|324106932|gb|EGC01222.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
           albus 8]
          Length = 1498

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 8/166 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD+ETTG + ++D+IIEIGAV+L      ++ F + + P G   +     L  ITD+ 
Sbjct: 448 ICFDLETTGTNPRDDKIIEIGAVKLRGLEIVDK-FDMLVDP-GCPLTEFISNLTNITDDM 505

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LK +    +    F +F  E+    +AHNA FD GFI    +R        S  IDT+ +
Sbjct: 506 LKGQSDIKTALEAFVEFCGEKPC-LVAHNAPFDTGFIKHACEREGIKFEFSS--IDTVPM 562

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++   P   ++ LN + + +G        H    D+ +L  ++I++
Sbjct: 563 SQLMLPQLEKHKLNYVAEHFG--YGDFQHHRGCDDAEVLGKIFIEL 606


>gi|182419729|ref|ZP_02950970.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237665534|ref|ZP_04525522.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376466|gb|EDT74047.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237658481|gb|EEP56033.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 1472

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 81/149 (54%), Gaps = 9/149 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   K ++I EIG +++ D  K    F  F+ P  +   P  +++  ITD+ +
Sbjct: 448 VLDLETTGFSPKLEKITEIGIMKVKD-GKVIDKFSTFVNPE-KPIPPRVVEVTNITDDMV 505

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++  +   +F +  +F   + +  +AHNA+FD+GF+    + +  D  D +  +DTLS+A
Sbjct: 506 RNAETIDKVFPKMLEFI--EGSILVAHNAEFDIGFLRHYAKVLGHD-FDFTY-LDTLSLA 561

Query: 131 RRKHPSSRN-DLNSLCKRYGI--TISHRS 156
           +   P  ++  L  + K  GI   ++HR+
Sbjct: 562 QDLFPQYKSYKLGRIAKNLGIKVEVAHRA 590


>gi|311740325|ref|ZP_07714155.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311304608|gb|EFQ80681.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 229

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 11/157 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLHGITDE 68
           V D ETTG + + DRIIE+      +  +    +   + P+G+  KNS     +HGIT+ 
Sbjct: 33  VIDTETTGFNKRYDRIIELAVARFDESFRLVDQWHTLINPDGKQIKNS----HIHGITNA 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTL 127
            +   P+F  +++EF    +      +AHNA FD   I AE +RI  D  D     +DT+
Sbjct: 89  DVAHAPTFPEVYTEFAARVD--GMVLMAHNAPFDSKMILAEAERITPDGEDVYFPFVDTI 146

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           ++A++        L++L    G  + +   H A+ D+
Sbjct: 147 ALAKQMVSLRSYKLSALLDHVG--LHNPQSHAAIADA 181


>gi|37679366|ref|NP_933975.1| ribonuclease T [Vibrio vulnificus YJ016]
 gi|54036328|sp|Q7MM91|RNT_VIBVY RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|37198109|dbj|BAC93946.1| ribonuclease T [Vibrio vulnificus YJ016]
          Length = 217

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D +       T    + P  G     EAL+ +G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKEALEFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   +      E +     EQ A        +AHNA FD+ F+NA  +R  +
Sbjct: 80  IRDPFSPLRGAVTEQEALKEIYKLIRREQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++   +   +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSALYDTEKTAELFCG 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|212638970|ref|YP_002315490.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Anoxybacillus flavithermus WK1]
 gi|212560450|gb|ACJ33505.1| DNA polymerase III, epsilon subunit and Rad3-related DNA helicase
           [Anoxybacillus flavithermus WK1]
          Length = 880

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 17/163 (10%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R +V DIETTG    K DRII+IG V +++  K  + F  F+ P   ++ P  ++ L GI
Sbjct: 4   RFVVVDIETTGNAPKKEDRIIQIGFV-VIEGDKVKKRFSTFVQP--ERDIPLFIQQLTGI 60

Query: 66  TDEFLKDKPSF---SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
               + D P F   +++  E W     + A ++AHN +FD  F+  E  R    P    R
Sbjct: 61  DHAMVHDAPPFQHIAAMLVEQW-----EGAYFVAHNVQFDWAFLQEEFIRSGIQP-PTCR 114

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           ++DT+ +AR   P+ S   LN L +   ++ +H   H A  D+
Sbjct: 115 LLDTVELARFLMPTQSSYKLNHLAE--ALSFAHDRPHQADYDA 155


>gi|192362510|ref|YP_001983050.1| ribonuclease T [Cellvibrio japonicus Ueda107]
 gi|190688675|gb|ACE86353.1| ribonuclease T [Cellvibrio japonicus Ueda107]
          Length = 223

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 26/202 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G +++ D ++EI AV + +D   +   + TF   + P  G      AL   G
Sbjct: 24  VIVDVETGGFNAQTDALLEIAAVTIRMDEDGFLHRHETFAFQVEPFEGANIEQAALDFTG 83

Query: 65  ITDEFLKDKPS---------FSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR 112
           I      D P           + +FS       E     A  + HNA FD+GF+NA ++R
Sbjct: 84  ID----PDSPDRIAEPELMVMTDLFSAVRRAVKESGCTRAVMVGHNAHFDLGFVNAAVER 139

Query: 113 IN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            N  ++P  P  + DT ++A       +  L   CK  GI  S+ + H A  D+   +D+
Sbjct: 140 CNIKRNPFHPFSVFDTATLAGLAF--GQTVLAKACKTAGIEFSNSAAHCAAYDAEKTADL 197

Query: 171 YIKMMVGGSQINFGFKTNEDRF 192
           +  ++V   Q   G+  ++D  
Sbjct: 198 FC-LIVNRWQTLGGWCASDDEL 218


>gi|325001618|ref|ZP_08122730.1| hypothetical protein PseP1_22781 [Pseudonocardia sp. P1]
          Length = 403

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 16/186 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            V D+ETTG   + D I E+GAV +             + P  R  + +  +L GIT+  
Sbjct: 26  CVVDLETTGGSHRADAITEVGAVSVRGGESIGE-LSTLVDPGTRVPA-DVTRLTGITNGM 83

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P   ++     D    + +  +AHNA FD GF+ A  +R ++ P     ++ T  +
Sbjct: 84  LAGAPPLGAVLPPVLDLL--RGSVLVAHNAPFDTGFLRAACER-HERPWPSPPVLCTARL 140

Query: 130 ARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFG 184
           AR   P S      L +L   +G   +    H AL D+    +V   ++  +G    N G
Sbjct: 141 ARAVLPRSECPSVRLGALAAHFGCRTT--PDHRALTDARATVEVLHHLLERIG----NLG 194

Query: 185 FKTNED 190
            ++ E+
Sbjct: 195 VQSLEE 200


>gi|332995649|gb|AEF05704.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2]
          Length = 710

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 4/104 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTG ++  +RI EIG V+++   +   T+Q  + P  R+      +L GI+D+ 
Sbjct: 544 VVVDIETTGGNNSYNRITEIGMVKIVA-GEVVDTYQTLINPQ-RRIPATITRLTGISDDM 601

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           + D P F  +      F +E  A ++AHN  FD GFI  E  R+
Sbjct: 602 VADAPLFVEVAERIASFTDE--AVFVAHNVNFDYGFIKQEFARL 643


>gi|224373045|ref|YP_002607417.1| exonuclease [Nautilia profundicola AmH]
 gi|223588855|gb|ACM92591.1| exonuclease [Nautilia profundicola AmH]
          Length = 203

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 21/176 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-----FQVFLCPNGRKNSPEALKLHG 64
           +V D ETTGLD K D II IGAV      K NR      F +F+ P+ ++ S E++K+H 
Sbjct: 32  VVVDTETTGLDRKKDEIISIGAV----IVKNNRVLLSRKFHIFVKPS-KELSIESIKIHK 86

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT + LK+     +    F +F   +N   + +  +FDV  +N   +R     L P+R I
Sbjct: 87  ITPDMLKNALEPETAIKMFLNFI--KNRPLVGYYLEFDVAMLNKLTKRYLGIKL-PNRQI 143

Query: 125 DTLSIARRKH----PSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  ++   K     P    DL  +S+ K   + I    KH AL D+ + + +YIK+
Sbjct: 144 EVSAVYYDKKIGLIPQKHIDLRFDSIMKDLNLPII--GKHDALNDAIMTALMYIKL 197


>gi|114773251|ref|ZP_01450486.1| hypothetical protein OM2255_00307 [alpha proteobacterium HTCC2255]
 gi|114546370|gb|EAU49279.1| hypothetical protein OM2255_00307 [alpha proteobacterium HTCC2255]
          Length = 313

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 7/161 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTG  + + +I EIG V++++    +  +Q  L P  R+       L GI D  
Sbjct: 143 VVVDIETTGGRATSHKITEIGMVKVINGQVVDE-YQTLLNPK-RRIPRNITALTGIDDVM 200

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P F+ +  E   F   +   ++AHN  FD GFI  E  R+ +     +++     +
Sbjct: 201 VSNAPIFAEVADEVAQF--TKGCVFVAHNVNFDYGFIKQEFTRLERH-FSRAKLCTVREM 257

Query: 130 ARRKHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLS 168
            + +   +   L +L + +GI +S  HR+   A+  + LL+
Sbjct: 258 RKARPGLASYSLANLTRHFGIEMSRHHRAMSDAIAANELLT 298


>gi|193216948|ref|YP_002000190.1| DNA polymerase III PolC [Mycoplasma arthritidis 158L3-1]
 gi|193002271|gb|ACF07486.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1]
          Length = 1438

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 10/170 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL  + + IIE GA  +++      + Q F+ P  +   P   ++  ITD  
Sbjct: 406 VVFDLETTGLSPRFNEIIEFGA-SIIENGIIKESHQFFIKPT-KPIPPSITEITKITDNT 463

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTL 127
           + +  S      + +D    +N   +AHNAKFD   IN   +   K  LD S+I  ID+L
Sbjct: 464 VANGYSQEEGVRKIYDIL--KNRICVAHNAKFD---INVCKENFLKYGLDNSKIIGIDSL 518

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +IAR     +++  L  + K++ +  +    H A  D+++L++V+I M++
Sbjct: 519 AIARFLIDEAKSYRLEIVAKKFNVYYARNEAHRADYDANVLANVWILMIL 568


>gi|322378997|ref|ZP_08053400.1| DNA polymerase III subunit epsilon (DnaQ) [Helicobacter suis HS1]
 gi|321148489|gb|EFX42986.1| DNA polymerase III subunit epsilon (DnaQ) [Helicobacter suis HS1]
          Length = 219

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 13/157 (8%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           DIETTG   +N  +IEI A+        +   +  R+F   +  +  +  P+  +L G++
Sbjct: 40  DIETTGSKPENSSMIEIAALLYEPPKNPMHKGQIIRSFSSLI--HCLEVPPKITELTGLS 97

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + LK+ P   ++  +F  F   Q+  ++AHNA FD  FI+A   ++    L  +++  T
Sbjct: 98  TDDLKEAPPLEAVLQDFKLFI--QDHIFVAHNADFDFHFISACCVQVLDSALSNAKLC-T 154

Query: 127 LSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGAL 161
           L++AR+  PS R+ L  L    G  I ISHR+   AL
Sbjct: 155 LNLARKCIPSPRHGLQFLNTFLGLDIPISHRAYADAL 191


>gi|291287762|ref|YP_003504578.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884922|gb|ADD68622.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
          Length = 205

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 24/176 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVEL-----LDYSKTNRTFQVFLCPNGRKN 55
           I  +++   VFD ETTG+   K  R++EIGAV++     LD   +  T       N +  
Sbjct: 4   IPFDQLTFTVFDTETTGMSPDKGARLLEIGAVKVKPGLVLDLQDSFCTLI-----NPKAP 58

Query: 56  SP-EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI---NAELQ 111
            P  A  +HGI+   + DKP    +   F+ F   +N    AHNA+FD  F+   +AE  
Sbjct: 59  IPYNAYSVHGISTAMVADKPEIKDVLPGFFSF--TENTIIAAHNARFDCSFVSHHSAECC 116

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYG--ITISHRSKHGALLDS 164
            +N  P+  ++I+DT+ +A+  H   ++  L +L   +   I +    +H AL D+
Sbjct: 117 IVN--PM--TKIVDTVKLAKSAHSGLKSYSLGNLIHYFSMDIPLPDTYRHRALYDA 168


>gi|11498577|ref|NP_069805.1| DNA polymerase III, subunit epsilon (dnaQ) [Archaeoglobus fulgidus
           DSM 4304]
 gi|2649627|gb|AAB90271.1| DNA polymerase III, subunit epsilon (dnaQ) [Archaeoglobus fulgidus
           DSM 4304]
          Length = 205

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 16/192 (8%)

Query: 4   KNKMRKIVF---DIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEA 59
           +  +RK+ F   D+ETTGL+ K D II IGAV ++        ++   L P   K+  E+
Sbjct: 2   EGSLRKVQFLSIDLETTGLNQKKDEIIAIGAVPIIGTRILAGESYYRLLRPEKFKH--ES 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INK 115
           +K HG+    LK    FS I  E  D    +    + +  + D GF+   L+R    +  
Sbjct: 60  MKFHGLDPARLKTAHDFSEIAEEVADLL--RGKVLVGYAIELDYGFLKRALKREGYKVEN 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +D       +     + P     L++L K+Y + +S+R  H AL D+ + + ++   +
Sbjct: 118 KRIDVIDFEKAVCYILGERPVGEMTLDNLAKKYRVEVSYR--HNALADAFITAQIFQVQL 175

Query: 176 VGGSQINFGFKT 187
           +    + +G KT
Sbjct: 176 L--KILKYGIKT 185


>gi|256847331|ref|ZP_05552777.1| helicase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715995|gb|EEU30970.1| helicase [Lactobacillus coleohominis 101-4-CHN]
          Length = 950

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 24/185 (12%)

Query: 4   KNKMRK-----IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           K K RK      V D+ETTG   K+ DRII++G V + D    N+ F+  + P   K   
Sbjct: 6   KTKQRKRGPIYSVVDLETTGTSVKSGDRIIQVGLVMIQDGKIINQ-FETRINPL-MKIPR 63

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              +L GITD+ +   P    I        +     ++AHN  FD  FIN EL R+ +DP
Sbjct: 64  SVQQLTGITDKDVSKAPLLEDIAPTLESLLS--GTIFVAHNVNFDFPFINHELTRVGRDP 121

Query: 118 LDPSRIIDTLSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSH----LLSD 169
           L  S  IDT+++++   P++++    DL S      + I H   H A+ D+     LL D
Sbjct: 122 LRIS-AIDTVTLSQILMPTAKSYRLRDLTSY-----LHIEHDHPHSAVSDAEATGVLLKD 175

Query: 170 VYIKM 174
           +  K+
Sbjct: 176 LLAKL 180


>gi|212715911|ref|ZP_03324039.1| hypothetical protein BIFCAT_00820 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661278|gb|EEB21853.1| hypothetical protein BIFCAT_00820 [Bifidobacterium catenulatum DSM
           16992]
          Length = 196

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 11/160 (6%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67
           IV D ETTGL   K  R+IEIGAV++ +    +   Q+    N  ++ P  +  L GI D
Sbjct: 23  IVIDTETTGLSVRKGARLIEIGAVKIHNDELVDEFDQLI---NPFEHIPSRITGLTGIDD 79

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN--AELQRINKDPLDPSRIID 125
             L  KP    +  EF  + ++  A  +AHNA FD+ F++   +L   ++D       +D
Sbjct: 80  GMLLGKPDVREVMDEFARWCSD-TAVVMAHNASFDMSFLDNAVQLAYADRDARFAHHFVD 138

Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164
           TL ++RR HP  R + +++L   Y   I+   +H AL D+
Sbjct: 139 TLDLSRRLHPEKRTHKVSTLIVDY--HIADMEEHRALSDA 176


>gi|126664190|ref|ZP_01735182.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
 gi|126623722|gb|EAZ94418.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
          Length = 202

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 7/153 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHG 64
           K R +VFD ETTGLD K+DRI+ IGAV + +       F +VFL  +  K   E++ +HG
Sbjct: 31  KKRYVVFDCETTGLDYKSDRILSIGAVAIENNQIIVGDFMEVFLLQDVFK--AESVPIHG 88

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I  E  ++K   +     F +F   ++A  + H+  FD+  IN  L R+    L    + 
Sbjct: 89  ILKEGKEEKIVEAEAIIRFLEFI--KDATLVGHHVDFDIEMINQGLARLEVGKLKNQAMD 146

Query: 125 DTLSIARRKH--PSSRNDLNSLCKRYGITISHR 155
             +   + K+      + L+ LC  Y I  S R
Sbjct: 147 TDVMYQKLKYLPQEQHSSLDELCDIYKIRKSDR 179


>gi|228940696|ref|ZP_04103259.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973614|ref|ZP_04134196.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980172|ref|ZP_04140486.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
 gi|228779530|gb|EEM27783.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
 gi|228786075|gb|EEM34072.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818940|gb|EEM65002.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 324

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 20  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 77

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 78  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPTNKVIDTVFL 134

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H AL D    + VY K
Sbjct: 135 AKKYMKH-APNHKLETLKRMLGIRL---SSHNALDDCITCAAVYQK 176


>gi|322381856|ref|ZP_08055810.1| ATP-dependent DNA helicase-like protein/DNA polymerase 3 subunit
           epsilon-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154244|gb|EFX46566.1| ATP-dependent DNA helicase-like protein/DNA polymerase 3 subunit
           epsilon-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 957

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 8/151 (5%)

Query: 26  IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85
           II++G V + ++  T+R +   + P  R  S     L GITDE +++ PS   + ++ + 
Sbjct: 24  IIQVGLVIIDEFDITDR-YTSLVNPGVRIPS-SITSLTGITDEMVENAPSVEKVMADLYP 81

Query: 86  FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSL 144
             +  +   +AH+A FD  F+   L +    P    R++DT+   R   PS  +  L  +
Sbjct: 82  LLS--DCVLVAHHASFDHAFLQRSLTKAGYPPFT-GRVLDTIDALRVAFPSLGSFQLGHV 138

Query: 145 CKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           C  +G  I H + H A  D+ + ++++I++M
Sbjct: 139 CSLFG--IEHENPHQANCDAQVTAELWIRIM 167


>gi|325128513|gb|EGC51390.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis N1568]
          Length = 470

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   V D+E+TG +   DR+IE+  V+     +  R  +     N +K  P+ +  L GI
Sbjct: 28  MPVAVVDLESTGGNLYEDRVIEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    +AHN++FD  F+  E  R+      P+  + 
Sbjct: 84  SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA--LC 139

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|326941329|gb|AEA17225.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 315

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPTNKVIDTVFL 125

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H AL D    + VY K
Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNALDDCITCAAVYQK 167


>gi|218295556|ref|ZP_03496369.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
 gi|218244188|gb|EED10714.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
          Length = 247

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 13/174 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL    + IIE+  V L    +    FQ    P  R  SP   +L GIT E 
Sbjct: 74  VVLDLETTGLAPGLNEIIEVALVRLEGERRV--AFQSLARPR-RPPSPFIQRLTGITLEE 130

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+  P    +    +     + A  +  NA FD+GF+   L  +  +  +P  ++D++ +
Sbjct: 131 LEKAPPLEEVLFRAYPLL--EGATLVIQNASFDLGFLRPALGELGLELENP--VVDSIRL 186

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD-SHLLSDVY--IKMMVGGS 179
           ++R     R   L++L +   + ++ R++H ALLD    L+ VY    M+  GS
Sbjct: 187 SKRAMRGLRRYGLDALSEV--LELAPRAEHRALLDVERTLAVVYEVYYMLTSGS 238


>gi|319426278|gb|ADV54352.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200]
          Length = 212

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 7/168 (4%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL  ++  R IEIGAV L++     + F   + P G + S       GI+++
Sbjct: 14  VVLDFETSGLSPNQGARAIEIGAV-LIENGVITQRFSELMDP-GFRISTFIEDYTGISNQ 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++      + + F DF  + +   +AHNA FD  F++AE   I+       +   +L 
Sbjct: 72  MLRNAAPCHEVMARFADFIGDNH--LVAHNAAFDQRFLDAEFAHIHHQ--YQGQFACSLL 127

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +ARR +P + N   +   RY    ++ + H AL D+ +   +++ M+ 
Sbjct: 128 LARRLYPLASNHQLATLVRYKQLPNNGTFHRALADAEMTGHLWLAMLA 175


>gi|171056716|ref|YP_001789065.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170774161|gb|ACB32300.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
          Length = 210

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+  S+  R  EIGAV L+   +    +Q  +  +G    P   +L GI++  
Sbjct: 6   VIDFETTGMTPSQGARATEIGAV-LVRGGEIVGQYQSLMY-SGVHIPPFIEQLTGISNAM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+D P    +  E   F   +    +AHNA FD GF  AE +R   +P        T+ +
Sbjct: 64  LRDAPPAEQVMREVAAF--TRGCPMVAHNAAFDRGFWLAERERAGCEPDLAQEFACTVLL 121

Query: 130 ARRKHPSSRN-DLNSLCKRYGIT---ISHRSKHGALLDSHLL 167
           +RR +  + N  L +L   +G+     +HR+   AL  +HLL
Sbjct: 122 SRRLNTEAPNHKLGTLASWFGLPNNGRAHRALADALTTAHLL 163


>gi|240047815|ref|YP_002961203.1| DNA polymerase III PolC [Mycoplasma conjunctivae HRC/581]
 gi|239985387|emb|CAT05400.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae]
          Length = 1455

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 9/171 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGIT 66
           R +VFD+ETTGL    + IIE GAV + D  +T  + Q F+    ++  P E  K+  IT
Sbjct: 400 RYVVFDLETTGLSPVYNEIIEFGAVVIQDGIQT-ESHQFFV--KAKEPIPTEITKITNIT 456

Query: 67  DEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            E + ++    +  F         +++  +AHNAKFD  F+ AEL +          IID
Sbjct: 457 QEMVDEQGIEATEAFYRISKII--KDSILVAHNAKFDFNFL-AELFKKEASMTIDQPIID 513

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL ++R  +PS ++  L ++ K  G+       H A  D+ +LS V++  +
Sbjct: 514 TLQVSRFLNPSQKSHSLKNVSKLIGLYYDETVAHRADYDAEILSKVWLNFL 564


>gi|114565211|ref|YP_752725.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
 gi|114336504|gb|ABI73886.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
          Length = 204

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 59/101 (58%), Gaps = 5/101 (4%)

Query: 10  IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   N DR IEIGAV+L++  +   TFQ  + P GR+ +    +  GI+++
Sbjct: 8   VVLDFETTGLSPDNGDRAIEIGAVKLVN-GQIVDTFQELINP-GRRVNSFIEQYTGISND 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
            LK  P+   +  +F  F +  N   +AHNA FD  F++AE
Sbjct: 66  MLKHAPTSKQVMGQFAKFIDGFN--LVAHNASFDKKFLDAE 104


>gi|310830408|ref|YP_003965509.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2]
 gi|309249875|gb|ADO59441.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2]
          Length = 311

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 11/169 (6%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V DIETTG   +K  RIIE+  V++ +  K    F   + P  +K  P+  +L GIT+E
Sbjct: 27  VVADIETTGFSPAKGGRIIEVAGVKI-ENGKIVDEFNQLINPE-QKIYPKITELTGITNE 84

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDPLDPSRIIDTL 127
            +  KP F  +  EF+ F  +  A ++AHN  FD   ++    +++     + S  I T 
Sbjct: 85  MVSGKPVFGQVLPEFYRFIGD--AVFVAHNKSFDWDRYLLHYFEKVGIIADNAS--ICTK 140

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +A+   P+     L  +CK  G+ I++   H AL DS  L+ V+++ +
Sbjct: 141 ILAKMYRPNLPAYGLEDICKDAGVQITNH--HRALDDSIALAHVFLRYL 187


>gi|188586746|ref|YP_001918291.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351433|gb|ACB85703.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 864

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 18/165 (10%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP--EALK 61
           +NK+  +VFD+ETTGLD+  D IIE+ A++       +  F  +L    R + P  E+ +
Sbjct: 497 QNKL--VVFDVETTGLDTTKDEIIELAALKAGKDGVVDE-FHEYL----RNSKPVGESFQ 549

Query: 62  LHGITDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +HGI+D+ L  + KP   S+ S F +F ++   + + HN  +D+  +  + +++    L+
Sbjct: 550 VHGISDQVLLEQGKPPEKSLAS-FTNFIDD--CDLVGHNVNYDITMVENQCKKLLNQDLE 606

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163
                DT+ I+RR  P   + +L SLC+   + IS +  H A+ D
Sbjct: 607 LHG-YDTVDISRRYFPRLEKYNLESLCE--DLQISSKPTHRAMDD 648


>gi|167462331|ref|ZP_02327420.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 816

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 8/151 (5%)

Query: 26  IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85
           II++G V + ++  T+R +   + P  R  S     L GITDE +++ PS   + ++ + 
Sbjct: 24  IIQVGLVIIDEFDITDR-YTSLVNPGVRIPS-SITSLTGITDEMVENAPSVEKVMADLYP 81

Query: 86  FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSL 144
             +  +   +AH+A FD  F+   L +    P    R++DT+   R   PS  +  L  +
Sbjct: 82  LLS--DCVLVAHHASFDHAFLQRSLTKAGYPPF-TGRVLDTIDALRVAFPSLGSFQLGHV 138

Query: 145 CKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           C  +G  I H + H A  D+ + ++++I++M
Sbjct: 139 CSLFG--IEHENPHQANCDAQVTAELWIRIM 167


>gi|152968358|ref|YP_001364142.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans
           SRS30216]
 gi|151362875|gb|ABS05878.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans
           SRS30216]
          Length = 224

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 8/111 (7%)

Query: 3   RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60
           R+ + R  V D+ETTGL  +  DR+++I AV LLD   T  R++   + P+     P   
Sbjct: 20  RRYRHRYAVLDVETTGLRPETGDRVVQI-AVTLLDARGTVERSWSSLVDPH---RDPGPT 75

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            +HGIT E L   P+F+ +        + +   ++AHNA+FD  F++AE++
Sbjct: 76  HVHGITAERLAGAPTFAQLAPTVAGLLDGRV--FVAHNARFDWKFVSAEMR 124


>gi|329847967|ref|ZP_08262995.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Asticcacaulis biprosthecum C19]
 gi|328843030|gb|EGF92599.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Asticcacaulis biprosthecum C19]
          Length = 708

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 7/144 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG  + NDR+ EI AV++    K    +   + P  R+      +L GIT+E 
Sbjct: 544 VVVDVETTGGRAVNDRVTEIAAVKVRG-GKIIAEWSSLINPE-RRIPGYITQLTGITNEM 601

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P F+ I  +   F +   A ++AHN  FD  FI +E +R+ +    P   + T + 
Sbjct: 602 VAGAPKFAEIADDLAAFLS--GAVFVAHNVNFDHSFIASEYRRLERRFHAPK--LCTCAG 657

Query: 130 ARRKHPSSRN-DLNSLCKRYGITI 152
            R+ +P   +  L  L K YGI +
Sbjct: 658 MRKYYPGHGSYGLGPLSKEYGIRL 681


>gi|268317061|ref|YP_003290780.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252]
 gi|262334595|gb|ACY48392.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252]
          Length = 616

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 10/157 (6%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD ETTGL   + D II IGAV ++    +   TF   + P  R  S +++++HGI   
Sbjct: 424 VFDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEETFDQLVNPR-RPISLDSVRVHGIQPV 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+DKP    +   F+ F   ++   + HN  FD+ FI  + + +      P  ++DT+ 
Sbjct: 483 LLQDKPPIEEVLPRFYRF--ARDTVLVGHNVAFDLKFIRQKEKALGLRFDQP--VLDTML 538

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           +A    P  ++  L+ L   +GI    R  H AL D+
Sbjct: 539 LAAVVDPERQHYGLDELAAAFGIEPVGR--HSALGDA 573


>gi|310659214|ref|YP_003936935.1| helicase, uvrd/rep/exonuclease family protein [Clostridium
           sticklandii DSM 519]
 gi|308825992|emb|CBH22030.1| putative Helicase, UvrD/REP/exonuclease family protein [Clostridium
           sticklandii]
          Length = 828

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 16/192 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGLD K D+II+I A++    +   + F+ F+  +   +  ++ K+H I+DEF
Sbjct: 469 VVFDVETTGLDIKKDKIIQIAALK-GGKNGVLQKFERFIKID--YSVGDSFKIHNISDEF 525

Query: 70  L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRIIDT 126
           L ++     S   +F  F   Q++  + HN  +D+  +   ++ I  N D L  S+I DT
Sbjct: 526 LFQNGVDAKSAIDDFLLF--SQDSVIVGHNVSYDINILKENMKAIDLNIDKL-SSKIFDT 582

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS----HLLSDVYIKMMVGGSQI 181
           L + R+ +P   +  L +L K +  +++H   H A+ D      +L  V  K++   ++ 
Sbjct: 583 LILTRKTYPGFFSYKLGNLFKEF--SLNHTPTHNAMDDVICTLEVLEKVVAKLLEKQAKR 640

Query: 182 NFGFKTNEDRFF 193
              F   +D F+
Sbjct: 641 QAVFTKYQDYFY 652


>gi|305666543|ref|YP_003862830.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170]
 gi|88708810|gb|EAR01045.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170]
          Length = 222

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 8/174 (4%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLH 63
           +++R IVFD ETTGLD  NDRI+ IGA+ +         + +++L     K   E++++H
Sbjct: 30  DEVRFIVFDTETTGLDIVNDRILSIGAISVFSGKLDIGDSLEIYLKQKIFK--AESVEIH 87

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI  E   +K +       F  +   +N   +AH+A FD+  INA L+R+    L  +++
Sbjct: 88  GILKEGSIEKHTEEEAIISFLKYI--ENGILVAHHAAFDIAMINAGLRRMGLPKL-KNKV 144

Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMM 175
           +DT  + ++      +N + SL    GI    +  +H +  D+ L   + +K++
Sbjct: 145 LDTGVLFKKTTLCEDKNKIYSLDYLSGIFKFRNHDRHTSSGDAFLTGMILLKIL 198


>gi|329940244|ref|ZP_08289526.1| DNA exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329301070|gb|EGG44966.1| DNA exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 251

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 23/161 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68
           + FD+ETTG D    RI+    +E+ D        + +L   G +   +A+ +HGIT+E 
Sbjct: 9   VGFDLETTGTDPYEARIVTGAVIEVRDGEPLG--HRQWLADPGVEIPEDAIAVHGITNER 66

Query: 69  -FLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN------- 114
              +  P      S + + + +W          +A+NA FD+  + AEL+R         
Sbjct: 67  ATAEGTPPDRVAESIAEVLTGYW----RAGVPVVAYNAAFDLTLLGAELRRHGLPSLRER 122

Query: 115 KDPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITIS 153
            D  DP+ ++D  +I RR  ++   + +L ++C  YG+ + 
Sbjct: 123 LDGADPAPVVDPYTIDRRVDRYRRGKRNLEAVCGEYGVVLG 163


>gi|259503450|ref|ZP_05746352.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041]
 gi|259168528|gb|EEW53023.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041]
          Length = 929

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 17/169 (10%)

Query: 13  DIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFL 70
           D+ETTG   +  DRII++G V + D    NR F+  + P  R+  P A+ +L GI +  +
Sbjct: 3   DLETTGTSVNHGDRIIQVGCVLVQDGQVINR-FETKINP--RERIPRAVVQLTGIQERDV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  +    +         ++AHN  FD  F+NAEL+R    PL   + IDT++++
Sbjct: 60  RKAPLFEDVAGTIYSLLT--GTIFVAHNVNFDFPFLNAELERAGYPPLS-IKAIDTVTLS 116

Query: 131 RRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +   P++++    DL S      + I H   H A+ D+   + + + ++
Sbjct: 117 QILLPTAKSFRLRDLTS-----SLQIEHDHPHSAVSDAEATTGLLVDLL 160


>gi|257094710|ref|YP_003168351.1| Exonuclease RNase T and DNA polymerase III [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047234|gb|ACV36422.1| Exonuclease RNase T and DNA polymerase III [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 469

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 12/169 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGIT 66
           R     +ETTG +   DRI +IG +E    ++ +R        N ++  PE ++ L+G  
Sbjct: 5   RLAFIGLETTGANPLRDRITKIGVLE----AEGDRVSTWSTLVNPQRPIPEFIQQLNGSR 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P+F+ + +E  D  + +   +IAH+A+F+  F+  E QR+ K     + ++ T
Sbjct: 61  DATVADAPTFAQVAAELADRLHGRL--FIAHHARFNYAFVKREFQRLGKS--FRADVLCT 116

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + ++R+  P   ++ L SL  R+ +T    S  GAL  +HLL   +  +
Sbjct: 117 VRLSRKLFPEHQKHHLESLMVRHDLTTGVHS--GALAAAHLLGQFWCVL 163


>gi|312795413|ref|YP_004028335.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454]
 gi|312167188|emb|CBW74191.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454]
          Length = 281

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 11/176 (6%)

Query: 1   MIRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           +I     R + F D+ETTG     DRI E+G +E+ D     R +   + P  +   P  
Sbjct: 36  LIHDADARPLAFVDLETTGGRPGLDRITEVGVIEV-DRDGVRR-WSTLVDPL-QPIPPFV 92

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L GITD  ++  P+F ++ +E     + +   +IAHNA+FD GF+    ++I     D
Sbjct: 93  QQLTGITDAMVRGAPTFDALAAELARRLDGKL--FIAHNARFDHGFLKKAFEQIGIR-FD 149

Query: 120 PSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           P  ++ T+ ++R   P  SR+ L++L +R  + +S   +H AL D+ L+   + ++
Sbjct: 150 PD-VLCTVRLSRALFPRESRHGLDALAQR--LDLSACGRHRALADADLVWQFWQRV 202


>gi|324993194|gb|EGC25114.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK405]
 gi|327461463|gb|EGF07794.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK1]
 gi|327489318|gb|EGF21111.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK1058]
          Length = 814

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 92/173 (53%), Gaps = 12/173 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           +N  +  V D+E TG  S N +II+IG V L++     +T++  + P+   +  E +K L
Sbjct: 3   QNDYKYAVVDLEATGTGS-NAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIKEL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P  
Sbjct: 59  TGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTPR- 115

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +DT+ +A+  +P+  +  L +LC    + IS  + H AL D+   + +++K+
Sbjct: 116 -VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165


>gi|328956370|ref|YP_004373703.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2]
 gi|328456694|gb|AEB07888.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2]
          Length = 977

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 25/224 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGL  ++D +IEI A  L     T R F+ F+ P+ +    E ++L GI D  
Sbjct: 50  VVLDTETTGLSRQDDELIEISAAVLSGREVTER-FETFVRPS-KPIPAEIVELTGIRDAD 107

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLS 128
           ++D P  +    +   F   +    IAHNA FD  FI A          D S I ID+L+
Sbjct: 108 VRDAPPATQAVRDLARFVGGRPV--IAHNAAFDRAFIEAV-----PGGSDASDIWIDSLA 160

Query: 129 IARRKHPS-SRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           ++R   P  + + L+SL + +G   +SHR+      D   L  V+  ++   + +  G  
Sbjct: 161 LSRIALPRLASHRLSSLAETFGCADVSHRAGD----DVRALCGVWRILLCALADLPAG-- 214

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
                  +      P+++   R  P+F+ I  E   EH    Q+
Sbjct: 215 -----LLRRLADMHPDVAWSYR--PIFSHIASENPGEHFSLAQS 251


>gi|237654661|ref|YP_002890975.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237625908|gb|ACR02598.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 482

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 9/161 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R    D+E+TG     DRI EI  + + D     R ++  + P G+   P   ++ GI+D
Sbjct: 6   RLAFIDVESTGAHPVRDRITEIAILRVEDGEVVAR-WESLVAP-GQPIPPLIEEVTGISD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + + P+F  +          +   ++AH+A+FD GFI     RI ++   P  ++ T+
Sbjct: 64  AMVAEAPAFEVLADTVAALL--EGCVFVAHSARFDYGFIRNAFTRIGREFEAP--VLCTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            ++R  +P   R+ L++L +R+G+  +  ++H A+ D  +L
Sbjct: 120 KLSRALYPEHHRHGLDALIERHGLVCA--ARHRAMGDVEVL 158


>gi|121635139|ref|YP_975384.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18]
 gi|120866845|emb|CAM10604.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18]
 gi|325132197|gb|EGC54893.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M6190]
 gi|325138130|gb|EGC60703.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis ES14902]
 gi|325198587|gb|ADY94043.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis G2136]
          Length = 470

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           M   V D+E+TG +   DR+ E+  V+     +  R  +     N +K  P+  + L GI
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVVGLTGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    +AHN++FD  F+  E  R+      P  ++ 
Sbjct: 84  SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSP--VLC 139

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|282856872|ref|ZP_06266130.1| DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens
           W5455]
 gi|282585290|gb|EFB90600.1| DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens
           W5455]
          Length = 196

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 8/166 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             DIETTGL      I+EI A+++     + R+FQ+ + P GR    +   +HGI D  +
Sbjct: 12  ALDIETTGLSPAFCGIVEIAALKIFP-DGSQRSFQMLVDP-GRPIPRDVSAIHGIDDAMV 69

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + +PS +   +    F     +  + HNA FD+ F+N  ++R  +   D   + DTL ++
Sbjct: 70  RGQPSAADAVAALVSFVGP--SPLVLHNAPFDMSFLNPVVRR-QRLQWDSPAVFDTLRLS 126

Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R+  P  +   L SL + +         H AL D      ++ +++
Sbjct: 127 RQAFPGLNSYSLESLSRFFDFDAG--GHHRALADCRYCVQLFARIL 170


>gi|254295577|ref|ZP_04963035.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           406e]
 gi|157805524|gb|EDO82694.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           406e]
          Length = 381

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTG  +   RI EIG V +     +  T+   + P  +   P   +L GITD  ++ 
Sbjct: 19  DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P+F+ I    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ ++R 
Sbjct: 76  APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131

Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|289450465|ref|YP_003475243.1| DNA polymerase III subunit alpha, Gram-positive type [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289185012|gb|ADC91437.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 1495

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 16/174 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCPNGRKNSPE-ALKLHG 64
           +  D+ETTGLD   +R+IEIGA + +  S    + + TF   L P  +   PE  +KL G
Sbjct: 446 VALDVETTGLDPVKERVIEIGAAKFVRNSSGEYEVSETFHRMLNPEVKL--PEFIMKLTG 503

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPS 121
           IT   +           +  DF  +      AHNA FD+GFI AE    Q IN   L  +
Sbjct: 504 ITQAEVDSGIKPLQAVQDLIDFVGDLPV--CAHNAMFDIGFIRAEGFRTQDINDPKLKFN 561

Query: 122 RI-IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            I IDTL ++    PS S + L+++C    I ++H   H A+ D+     ++ +
Sbjct: 562 PITIDTLRLSVLFWPSLSNHKLDTVCNFLQIDLAHH--HRAVDDAIACGQIFAR 613


>gi|76808562|ref|YP_334417.1| DNA polymerase/helicase [Burkholderia pseudomallei 1710b]
 gi|126455164|ref|YP_001067249.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia
           pseudomallei 1106a]
 gi|134278018|ref|ZP_01764733.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 305]
 gi|217420886|ref|ZP_03452391.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 576]
 gi|242315973|ref|ZP_04814989.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106b]
 gi|254195634|ref|ZP_04902061.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei S13]
 gi|254261397|ref|ZP_04952451.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1710a]
 gi|76578015|gb|ABA47490.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 1710b]
 gi|126228806|gb|ABN92346.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106a]
 gi|134251668|gb|EBA51747.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 305]
 gi|169652380|gb|EDS85073.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei S13]
 gi|217396298|gb|EEC36315.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 576]
 gi|242139212|gb|EES25614.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106b]
 gi|254220086|gb|EET09470.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1710a]
          Length = 381

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTG  +   RI EIG V +     +  T+   + P  +   P   +L GITD  ++ 
Sbjct: 19  DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P+F+ I    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ ++R 
Sbjct: 76  APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131

Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|297584199|ref|YP_003699979.1| DNA polymerase III subunit epsilon [Bacillus selenitireducens
           MLS10]
 gi|297142656|gb|ADH99413.1| DNA polymerase III, epsilon subunit [Bacillus selenitireducens
           MLS10]
          Length = 242

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 14/170 (8%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           VFD+ETTG      D ++ IGA +L    +D+ +    F   + P  +  S     L G+
Sbjct: 62  VFDLETTGFFCNLGDEVLAIGATKLNRNRIDFPEQ---FYEVIEPV-KPMSAFVSNLTGM 117

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E +    +F   FS+F +F   + +  +AH A FDV F+     R      DP   ID
Sbjct: 118 THEEVTAGLAFPEAFSKFLEF--SKGSILVAHPASFDVQFLKILADRWRLHGYDP-LYID 174

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +A+  +P  RN L+ L K Y I  S R  H AL D+++ + V+  ++
Sbjct: 175 QYQLAKSLYPRKRNSLDELIKLYQIETSGR--HHALADAYMTATVFHHLL 222


>gi|291548851|emb|CBL25113.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Ruminococcus torques L2-14]
          Length = 231

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 11/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD+ETTGL  +   IIEIGA+++ +    +R F  F+ P+ +  +P    +  IT++ 
Sbjct: 6   IAFDLETTGLSPQEHEIIEIGALKVREGKVVDR-FMEFVHPD-KPITPMITNITHITNDM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLS 128
           +    S   +  +F  F   ++   I HN  FD  F+     R   + L   ++ IDTL 
Sbjct: 64  VAGARSCPEVIHDFLSFC--EDDVLIGHNVMFDYSFVKCSAVR---EGLTFEKMGIDTLK 118

Query: 129 IARRKHPS-SRNDLNSLCKRYGI--TISHRSKHGALLDSHL 166
           IAR+ H       L +LC  Y I    +HR+ + AL  + L
Sbjct: 119 IARKVHKDFESKSLGALCDYYHIENPAAHRAYYDALATAKL 159


>gi|321309654|ref|YP_004191983.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801498|emb|CBY92144.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           haemofelis str. Langford 1]
          Length = 1393

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 90/200 (45%), Gaps = 29/200 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNR--TFQVFLCPNGRKNSPEALKLH----- 63
           VFDIETTGL+   D I EI    +  YS   R  T+  +          E LK H     
Sbjct: 353 VFDIETTGLNPLFDEITEIA---IYKYSNKRRIATYHSYF------KISEPLKQHIKDLT 403

Query: 64  GITDEFLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPS 121
            ITDE L +K      +  E  DF   Q +  +AHN  +FD  F+NA+  ++  +PL  +
Sbjct: 404 HITDELLAEKGQDLEVVLKEVKDF--TQGSVLVAHNGIEFDFPFLNAKYIKLGMEPLS-N 460

Query: 122 RIIDTLSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI-----K 173
            +IDTL +++      +   + L ++CKR G+       H A  D  +L  V++     K
Sbjct: 461 PLIDTLRLSQTIFSEEKYKSHSLGAICKRVGVEYDLEHAHSADFDVDVLWQVFMYSLEPK 520

Query: 174 MMVGGSQINFGFKTNEDRFF 193
           +   G  +  G K   D  F
Sbjct: 521 LKEWGVNLEDGLKEANDAVF 540


>gi|237750780|ref|ZP_04581260.1| DNA polymerase III subunit epsilon [Helicobacter bilis ATCC 43879]
 gi|229373225|gb|EEO23616.1| DNA polymerase III subunit epsilon [Helicobacter bilis ATCC 43879]
          Length = 268

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 76/168 (45%), Gaps = 20/168 (11%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNS 56
           I  N+ +    DIETT    KN +IIEIGA+     E+LD   T   +  F+        
Sbjct: 73  INLNEAKLCFVDIETTSASVKNGQIIEIGAIIAQNGEILDTFDT-LVYSPFV-------- 123

Query: 57  PE-ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           PE  + L GI    L+D P    +  +F  F    ++ ++AHN  FD  FI   L   + 
Sbjct: 124 PEDIIDLTGIDSYMLEDAPRLEQVLKQFRAFLG--DSVFVAHNVSFDYNFIAESLHEYDM 181

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGAL 161
            PL   R+  TL ++RR   S +  L  L    GI    +HR+   AL
Sbjct: 182 PPLFNPRLC-TLDLSRRTIVSKKYALAYLNDMLGINTAQAHRAYADAL 228


>gi|225850145|ref|YP_002730379.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
 gi|225645024|gb|ACO03210.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
          Length = 205

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 7/166 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG + +++ IIEI A++       +R F   + P          KL GIT   +
Sbjct: 13  IIDIETTGFNPESNDIIEIAAIKYQGNIILDR-FWSLIKPEIELIPEHISKLTGITTAMV 71

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLSI 129
            D+P+   +  +F +F   +N   + HN +FD+ F+N + + I NK   +P    D L+ 
Sbjct: 72  IDQPTVDKVLPDFLNFI--ENTILVGHNIRFDLAFLNKKAKEILNKTIKNPFICTDHLAR 129

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                  S++ L S+ + + I  S   +H A+ D+ +  +++IKM+
Sbjct: 130 KILSDIDSKS-LASIAQHFNIPFSR--QHRAMYDAEVNLEIFIKML 172


>gi|167920040|ref|ZP_02507131.1| possible DNA polymerase/helicase [Burkholderia pseudomallei BCC215]
          Length = 346

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTG  +   RI EIG V +     +  T+   + P  +   P   +L GITD  ++ 
Sbjct: 19  DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P+F+ I    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ ++R 
Sbjct: 76  APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131

Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|205373870|ref|ZP_03226672.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus coahuilensis m4-4]
          Length = 194

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 11/156 (7%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65
           R +V D+ETTG   K  DRII++ A  L+++ +    F  FL PN  K  P  + +L GI
Sbjct: 5   RYVVVDLETTGNSPKRGDRIIQLSAC-LIEHGEIVEQFTSFLNPN--KTIPIFIEELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   + D P+F  I  +     N+  + ++AHN  FD+ F+  EL            I+D
Sbjct: 62  TQPMVDDAPNFEQIAPKLISMLND--SVFVAHNVTFDLSFLQWELHAAGYKTFQ-GPILD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160
           T+ +A+   P+S +  L  L +++ +   H   H A
Sbjct: 119 TVELAKICFPTSNSYKLGDLSEKFNLL--HERPHQA 152


>gi|126438667|ref|YP_001059957.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia
           pseudomallei 668]
 gi|126218160|gb|ABN81666.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 668]
          Length = 381

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTG  +   RI EIG V +     +  T+   + P  +   P   +L GITD  ++ 
Sbjct: 19  DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P+F+ I    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ ++R 
Sbjct: 76  APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131

Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|293568616|ref|ZP_06679931.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1071]
 gi|291588576|gb|EFF20409.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1071]
          Length = 929

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG + K DRII+ G V +++  +    F + + P GRK S +   L GIT++ +
Sbjct: 8   VVDIETTGTNPKEDRIIQFGCV-MIEAGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
           +  P F  +    ++     +  ++AHN  FD  F+N EL R     L  P   IDT+ +
Sbjct: 66  QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121

Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A+      PS R  L  L +  G    H + H A  D+ +
Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157


>gi|257886903|ref|ZP_05666556.1| DNA polymerase III [Enterococcus faecium 1,141,733]
 gi|257822957|gb|EEV49889.1| DNA polymerase III [Enterococcus faecium 1,141,733]
          Length = 929

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG + K DRII+ G V +++  +    F + + P GRK S +   L GIT++ +
Sbjct: 8   VVDIETTGTNPKEDRIIQFGCV-MIEAGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
           +  P F  +    ++     +  ++AHN  FD  F+N EL R     L  P   IDT+ +
Sbjct: 66  QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121

Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A+      PS R  L  L +  G    H + H A  D+ +
Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157


>gi|226197921|ref|ZP_03793495.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813373|ref|YP_002897824.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|254181036|ref|ZP_04887634.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1655]
 gi|184211575|gb|EDU08618.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1655]
 gi|225930109|gb|EEH26122.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506315|gb|ACQ98633.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           MSHR346]
          Length = 381

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTG  +   RI EIG V +     +  T+   + P  +   P   +L GITD  ++ 
Sbjct: 19  DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P+F+ I    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ ++R 
Sbjct: 76  APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131

Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|167825322|ref|ZP_02456793.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 9]
          Length = 352

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTG  +   RI EIG V +     +  T+   + P  +   P   +L GITD  ++ 
Sbjct: 19  DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P+F+ I    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ ++R 
Sbjct: 76  APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131

Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|294622016|ref|ZP_06701159.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium U0317]
 gi|291598406|gb|EFF29480.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium U0317]
          Length = 929

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG + K DRII+ G V +++  +    F + + P GRK S +   L GIT++ +
Sbjct: 8   VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
           +  P F  +    ++     +  ++AHN  FD  F+N EL R     L  P   IDT+ +
Sbjct: 66  QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121

Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A+      PS R  L  L +  G    H + H A  D+ +
Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157


>gi|227813558|ref|YP_002813567.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. CDC 684]
 gi|227004983|gb|ACP14726.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. CDC 684]
          Length = 315

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R      + L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRIMSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|167903799|ref|ZP_02491004.1| possible DNA polymerase/helicase [Burkholderia pseudomallei NCTC
           13177]
          Length = 349

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTG  +   RI EIG V +     +  T+   + P  +   P   +L GITD  ++ 
Sbjct: 19  DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P+F+ I    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ ++R 
Sbjct: 76  APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131

Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|167739715|ref|ZP_02412489.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 14]
          Length = 323

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTG  +   RI EIG V +     +  T+   + P  +   P   +L GITD  ++ 
Sbjct: 19  DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P+F+ I    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ ++R 
Sbjct: 76  APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131

Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|329938978|ref|ZP_08288352.1| exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329301863|gb|EGG45756.1| exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 242

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 16/156 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D + DRI+   AV + + +      + +L   G     EA  +HG+T+E L
Sbjct: 11  AFDTETTGVDVEGDRIVS-AAVVVQEAAGARPRVRRWLVDPGVPVPAEATAVHGLTEEHL 69

Query: 71  K-----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD------ 119
           +       P    +  E   +        +  NA FD+  ++ EL+R     LD      
Sbjct: 70  RRNGRWPAPVMREMADEL-QYLAAAGRPLVVMNAPFDLTLLDRELRRHRASSLDRWLAAS 128

Query: 120 -PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
            P R++D   + R   ++   R  L  LC  YG+T+
Sbjct: 129 APLRVLDPRVLDRHLDRYRKGRRTLTDLCAHYGVTL 164


>gi|326791343|ref|YP_004309164.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM
           5427]
 gi|326542107|gb|ADZ83966.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM
           5427]
          Length = 837

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 17/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+E+TGL +  D +I+I A+    Y K     Q+ +     K+  E+  +HG +D+ 
Sbjct: 477 VVLDVESTGLSTIKDDVIQIAAIR---YGKEGVVDQLDILLKPTKSVGESYYVHGFSDDL 533

Query: 70  L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L K+         +F  F   Q A  + HN  +D+  I + + R   +P+   ++ DTL 
Sbjct: 534 LQKEGMEPKEALKQFVHFI--QGAVLVGHNVNYDLQIIKSMMSRYKLEPIGEYQVYDTLD 591

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD--------SHLLSDV 170
           +A + +P  S + L +L K   I       H A+ D        SHLL  +
Sbjct: 592 LAYKVYPKLSNHKLETLSKL--IVTETIPTHNAMQDILATSEVLSHLLKHI 640


>gi|167912066|ref|ZP_02499157.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 112]
          Length = 343

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTG  +   RI EIG V +     +  T+   + P  +   P   +L GITD  ++ 
Sbjct: 19  DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P+F+ I    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ ++R 
Sbjct: 76  APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131

Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|167720732|ref|ZP_02403968.1| possible DNA polymerase/helicase [Burkholderia pseudomallei DM98]
          Length = 334

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTG  +   RI EIG V +     +  T+   + P  +   P   +L GITD  ++ 
Sbjct: 19  DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P+F+ I    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ ++R 
Sbjct: 76  APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131

Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|257898090|ref|ZP_05677743.1| DNA polymerase III [Enterococcus faecium Com15]
 gi|257836002|gb|EEV61076.1| DNA polymerase III [Enterococcus faecium Com15]
          Length = 929

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG + K DRII+ G V +++  +    F + + P GRK S +   L GIT++ +
Sbjct: 8   VVDIETTGTNPKEDRIIQFGCV-MIEAGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
           +  P F  +    ++     +  ++AHN  FD  F+N EL R     L  P   IDT+ +
Sbjct: 66  QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121

Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A+      PS R  L  L +  G    H + H A  D+ +
Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157


>gi|257883091|ref|ZP_05662744.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257818749|gb|EEV46077.1| DNA polymerase III [Enterococcus faecium 1,231,502]
          Length = 929

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG + K DRII+ G V +++  +    F + + P GRK S +   L GIT++ +
Sbjct: 8   VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
           +  P F  +    ++     +  ++AHN  FD  F+N EL R     L  P   IDT+ +
Sbjct: 66  QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121

Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A+      PS R  L  L +  G    H + H A  D+ +
Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157


>gi|227551932|ref|ZP_03981981.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecium TX1330]
 gi|257895474|ref|ZP_05675127.1| DNA polymerase III [Enterococcus faecium Com12]
 gi|293378340|ref|ZP_06624509.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecium PC4.1]
 gi|227178933|gb|EEI59905.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecium TX1330]
 gi|257832039|gb|EEV58460.1| DNA polymerase III [Enterococcus faecium Com12]
 gi|292643204|gb|EFF61345.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecium PC4.1]
          Length = 929

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG + K DRII+ G V +++  +    F + + P GRK S +   L GIT++ +
Sbjct: 8   VVDIETTGTNPKEDRIIQFGCV-MIEAGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
           +  P F  +    ++     +  ++AHN  FD  F+N EL R     L  P   IDT+ +
Sbjct: 66  QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121

Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A+      PS R  L  L +  G    H + H A  D+ +
Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157


>gi|167846824|ref|ZP_02472332.1| possible DNA polymerase/helicase [Burkholderia pseudomallei B7210]
          Length = 348

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTG  +   RI EIG V +     +  T+   + P  +   P   +L GITD  ++ 
Sbjct: 19  DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P+F+ I    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ ++R 
Sbjct: 76  APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131

Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|299821667|ref|ZP_07053555.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601]
 gi|299817332|gb|EFI84568.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601]
          Length = 929

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M RK K R +V D+ETTG  + ++DRII+  A  L++ SK   T+  F+ P  R+  P  
Sbjct: 1   MKRKEK-RYLVVDLETTGNQANRHDRIIQFAAT-LVEGSKRLETYSTFINPE-REIPPFI 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L GI      D P F+ +     +    ++  ++AHN  FD  F+  E+QR    PL 
Sbjct: 58  QQLTGIKPSDCYDAPIFTDVAPIIQNLL--EDCIFVAHNVSFDWTFLAREMQRAGY-PLP 114

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            ++ +DT+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 115 KTKKLDTVELARIIYPGIDSYKLQDLSDEF--KLGHDRPHQADSDAEVTAD 163


>gi|293571662|ref|ZP_06682683.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E980]
 gi|291608332|gb|EFF37633.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E980]
          Length = 929

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG + K DRII+ G V +++  +    F + + P GRK S +   L GIT++ +
Sbjct: 8   VVDIETTGTNPKEDRIIQFGCV-MIEAGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
           +  P F  +    ++     +  ++AHN  FD  F+N EL R     L  P   IDT+ +
Sbjct: 66  QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121

Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A+      PS R  L  L +  G    H + H A  D+ +
Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157


>gi|69247318|ref|ZP_00604300.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase
           [Enterococcus faecium DO]
 gi|257890489|ref|ZP_05670142.1| DNA polymerase III [Enterococcus faecium 1,231,410]
 gi|258614363|ref|ZP_05712133.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Enterococcus faecium DO]
 gi|260558928|ref|ZP_05831115.1| DNA polymerase III [Enterococcus faecium C68]
 gi|293559766|ref|ZP_06676286.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1162]
 gi|314940162|ref|ZP_07847340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133a04]
 gi|314942421|ref|ZP_07849264.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133C]
 gi|314950181|ref|ZP_07853466.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0082]
 gi|314952303|ref|ZP_07855314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133A]
 gi|314994254|ref|ZP_07859557.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133B]
 gi|68194888|gb|EAN09359.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase
           [Enterococcus faecium DO]
 gi|257826849|gb|EEV53475.1| DNA polymerase III [Enterococcus faecium 1,231,410]
 gi|260075036|gb|EEW63351.1| DNA polymerase III [Enterococcus faecium C68]
 gi|291606249|gb|EFF35663.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1162]
 gi|313591341|gb|EFR70186.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133B]
 gi|313595562|gb|EFR74407.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133A]
 gi|313598821|gb|EFR77666.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133C]
 gi|313640601|gb|EFS05181.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133a04]
 gi|313643491|gb|EFS08071.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0082]
          Length = 929

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG + K DRII+ G V +++  +    F + + P GRK S +   L GIT++ +
Sbjct: 8   VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
           +  P F  +    ++     +  ++AHN  FD  F+N EL R     L  P   IDT+ +
Sbjct: 66  QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121

Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A+      PS R  L  L +  G    H + H A  D+ +
Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157


>gi|30263558|ref|NP_845935.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Ames]
 gi|47528957|ref|YP_020306.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186408|ref|YP_029660.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Sterne]
 gi|65320888|ref|ZP_00393847.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bacillus anthracis str. A2012]
 gi|165871011|ref|ZP_02215662.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0488]
 gi|167636474|ref|ZP_02394772.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0442]
 gi|167640607|ref|ZP_02398869.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0193]
 gi|170688408|ref|ZP_02879616.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0465]
 gi|170708125|ref|ZP_02898572.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0389]
 gi|177652488|ref|ZP_02934955.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0174]
 gi|190565123|ref|ZP_03018044.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|229603113|ref|YP_002867802.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0248]
 gi|254686178|ref|ZP_05150037.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
           CNEVA-9066]
 gi|254726056|ref|ZP_05187838.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. A1055]
 gi|254738651|ref|ZP_05196354.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744791|ref|ZP_05202469.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Kruger
           B]
 gi|254752968|ref|ZP_05205004.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Vollum]
 gi|254759240|ref|ZP_05211266.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
           Australia 94]
 gi|30258193|gb|AAP27421.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. Ames]
 gi|47504105|gb|AAT32781.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49180335|gb|AAT55711.1| DNA polymerase III, epsilon subunit, putative [Bacillus anthracis
           str. Sterne]
 gi|164713222|gb|EDR18748.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0488]
 gi|167511475|gb|EDR86859.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0193]
 gi|167528133|gb|EDR90925.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0442]
 gi|170126933|gb|EDS95813.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0389]
 gi|170667578|gb|EDT18333.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0465]
 gi|172082162|gb|EDT67229.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0174]
 gi|190564440|gb|EDV18404.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|229267521|gb|ACQ49158.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0248]
          Length = 315

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R      + L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRIMSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|314997169|ref|ZP_07862155.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133a01]
 gi|313588743|gb|EFR67588.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133a01]
          Length = 929

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG + K DRII+ G V +++  +    F + + P GRK S +   L GIT++ +
Sbjct: 8   VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
           +  P F  +    ++     +  ++AHN  FD  F+N EL R     L  P   IDT+ +
Sbjct: 66  QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121

Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A+      PS R  L  L +  G    H + H A  D+ +
Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157


>gi|293553821|ref|ZP_06674436.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1039]
 gi|291602027|gb|EFF32264.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1039]
          Length = 929

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG + K DRII+ G V +++  +    F + + P GRK S +   L GIT++ +
Sbjct: 8   VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
           +  P F  +    ++     +  ++AHN  FD  F+N EL R     L  P   IDT+ +
Sbjct: 66  QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121

Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A+      PS R  L  L +  G    H + H A  D+ +
Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157


>gi|294619947|ref|ZP_06699320.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1679]
 gi|291593804|gb|EFF25305.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1679]
          Length = 929

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG + K DRII+ G V +++  +    F + + P GRK S +   L GIT++ +
Sbjct: 8   VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
           +  P F  +    ++     +  ++AHN  FD  F+N EL R     L  P   IDT+ +
Sbjct: 66  QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121

Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A+      PS R  L  L +  G    H + H A  D+ +
Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157


>gi|294616364|ref|ZP_06696157.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1636]
 gi|291590878|gb|EFF22594.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1636]
          Length = 929

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG + K DRII+ G V +++  +    F + + P GRK S +   L GIT++ +
Sbjct: 8   VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
           +  P F  +    ++     +  ++AHN  FD  F+N EL R     L  P   IDT+ +
Sbjct: 66  QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121

Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A+      PS R  L  L +  G    H + H A  D+ +
Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157


>gi|261209451|ref|ZP_05923814.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289566622|ref|ZP_06447041.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           D344SRF]
 gi|260076579|gb|EEW64343.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289161563|gb|EFD09444.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           D344SRF]
          Length = 929

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG + K DRII+ G V +++  +    F + + P GRK S +   L GIT++ +
Sbjct: 8   VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
           +  P F  +    ++     +  ++AHN  FD  F+N EL R     L  P   IDT+ +
Sbjct: 66  QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121

Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A+      PS R  L  L +  G    H + H A  D+ +
Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157


>gi|257884118|ref|ZP_05663771.1| DNA polymerase III [Enterococcus faecium 1,231,501]
 gi|257819956|gb|EEV47104.1| DNA polymerase III [Enterococcus faecium 1,231,501]
          Length = 929

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG + K DRII+ G V +++  +    F + + P GRK S +   L GIT++ +
Sbjct: 8   VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
           +  P F  +    ++     +  ++AHN  FD  F+N EL R     L  P   IDT+ +
Sbjct: 66  QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121

Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A+      PS R  L  L +  G    H + H A  D+ +
Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157


>gi|257879980|ref|ZP_05659633.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|257894416|ref|ZP_05674069.1| DNA polymerase III [Enterococcus faecium 1,231,408]
 gi|257814208|gb|EEV42966.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|257830795|gb|EEV57402.1| DNA polymerase III [Enterococcus faecium 1,231,408]
          Length = 929

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG + K DRII+ G V +++  +    F + + P GRK S +   L GIT++ +
Sbjct: 8   VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
           +  P F  +    ++     +  ++AHN  FD  F+N EL R     L  P   IDT+ +
Sbjct: 66  QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121

Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A+      PS R  L  L +  G    H + H A  D+ +
Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157


>gi|119478307|ref|ZP_01618338.1| ribonuclease T [marine gamma proteobacterium HTCC2143]
 gi|119448647|gb|EAW29892.1| ribonuclease T [marine gamma proteobacterium HTCC2143]
          Length = 235

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D + D I+EI A  L    +     ++TF   + P  G    P AL+  G
Sbjct: 35  VVIDVETGGFDCQTDAILEIAASTLTMNDEGIICIDKTFSFNVAPFEGANLEPAALEFTG 94

Query: 65  I--TDEFLKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQR--I 113
           I     F +  P    +F++  +   +Q        A  + HNA FD GF+ A ++R  I
Sbjct: 95  IDPYHPFREADPE-EVVFTDLLNAIRKQVKVHDCTRAVLVGHNAHFDHGFVMAAVERCQI 153

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT ++A       +  L   C+  GI+ ++   H A  D+   ++++  
Sbjct: 154 KRNPFHPFSVFDTATLAGLAF--GQTVLAKACQTAGISFNNAEAHSAAYDTGKTAELFCL 211

Query: 174 MM 175
           ++
Sbjct: 212 IV 213


>gi|262274550|ref|ZP_06052361.1| ribonuclease T [Grimontia hollisae CIP 101886]
 gi|262221113|gb|EEY72427.1| ribonuclease T [Grimontia hollisae CIP 101886]
          Length = 223

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++EI AV L +D   +   ++T    + P  G     EAL  +G
Sbjct: 20  VVIDVETAGFNPQTDALLEICAVTLKMDEDGWLSPDKTIHFHVTPFEGANLEQEALAFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQRIN- 114
           I D F  L+          E +    +       Q A  +AHNA FD  F+ A  +R N 
Sbjct: 80  IKDPFSPLRGAVDEEHALKEIFKLIRKEQKASGCQRAIMVAHNANFDHSFVMAASERANL 139

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   CK  GI   +   H AL D+   ++++ +
Sbjct: 140 KRNPFHPFATFDTAALSGLA--LGQTVLAKACKTAGIAFDNNEAHSALYDTERTAELFCE 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|315640656|ref|ZP_07895761.1| DNA polymerase III [Enterococcus italicus DSM 15952]
 gi|315483595|gb|EFU74086.1| DNA polymerase III [Enterococcus italicus DSM 15952]
          Length = 911

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 8/165 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG + K DRI + G V + +     R F   + P GR  SP+   L   T++ +
Sbjct: 6   IVDIETTGTNPKEDRIFQFGCVFVENGEIVGR-FATMIHP-GRSISPQIQHLTHTTNKDV 63

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  +    ++  +     ++AHN  FD  F+NAEL+R   + L   + IDT+ +A
Sbjct: 64  RHSPYFEDVAPTIYELLS--GTVFVAHNIHFDYRFLNAELERCGCERLQ-LKGIDTVELA 120

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +   P+  +  L+ L +  G  ++H   H A  D+ + + ++I +
Sbjct: 121 QILFPTEISFRLSDLSESLG--LAHERPHQADSDAEVTAQLFIAL 163


>gi|239623211|ref|ZP_04666242.1| DNA polymerase III subunit epsilon [Clostridiales bacterium
           1_7_47_FAA]
 gi|239522177|gb|EEQ62043.1| DNA polymerase III subunit epsilon [Clostridiales bacterium
           1_7_47FAA]
          Length = 240

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 10/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D+ETTGL+ K ++I EI A++++D   + R +  F+ P GR       +L GITD  
Sbjct: 6   IALDLETTGLEPKQEKITEIAALKVVDGVISQR-YVTFVNP-GRSLGAYITQLTGITDGM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P    +  +   F    +   + HN +FD  F+      +N+        IDTL++
Sbjct: 64  LADAPPIEELIEDVVKFCG--DLPLLGHNIRFDYSFLKHAA--VNRRLEFEREGIDTLTL 119

Query: 130 ARR-KHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLL 167
            R      +R +L+  C  + +  + +HR++  A   +HLL
Sbjct: 120 CRAFMTGETRKNLSCACSYFHVPQSTAHRAQADAEA-AHLL 159


>gi|126435878|ref|YP_001071569.1| hypothetical protein Mjls_3300 [Mycobacterium sp. JLS]
 gi|126235678|gb|ABN99078.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS]
          Length = 630

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 33/177 (18%)

Query: 10  IVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALK 61
           +V D+ETTG  +  +R   I EIGAV++       R  +V      L   GR   P+ + 
Sbjct: 31  VVVDLETTGGRATGERPDAITEIGAVKV-------RGGEVLGELATLVDPGRAIPPQIVS 83

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDP 120
           L GIT   +   P   S+   F +F   + +  +AHNA FD+GF+ A  ++     P  P
Sbjct: 84  LTGITTAMVCAAPRIESVLPAFLEF--ARGSVLVAHNAGFDIGFLRAAAEQCGLTWPRPP 141

Query: 121 SRIIDTLSIARR-----KHPSSRNDLNSLCK--RYGITISHRSKHGALLDSHLLSDV 170
             ++ T+ +ARR     + PS R  L++L +  R   T +HR    AL D+    DV
Sbjct: 142 --VLCTVKLARRVLTRDEAPSVR--LSALAQLFRAKTTPTHR----ALDDARATVDV 190


>gi|309807670|ref|ZP_07701611.1| putative CRISPR-associated endoribonuclease Cas2 [Lactobacillus
           iners LactinV 01V1-a]
 gi|308169103|gb|EFO71180.1| putative CRISPR-associated endoribonuclease Cas2 [Lactobacillus
           iners LactinV 01V1-a]
          Length = 275

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 14/161 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALK-LHGITD 67
           ++ D+ETTGLD  N+ IIEIGA+      K  +  + + C   +  + P A+K L GI+D
Sbjct: 110 VIIDLETTGLDYINNNIIEIGAI------KIAKNIEEYSCIVKQNITLPNAIKILTGISD 163

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             LK+    S    E   F  ++    + +N  FD+ FIN  L+R  +  L  +++ D +
Sbjct: 164 AELKNGKDESVAIKELCTFIGDK--ALVGYNVNFDIRFINEALKRNGQSQL-TNKVYDVM 220

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLL 167
              +R     +N  L+++   YGI I  +  H A+ D  ++
Sbjct: 221 KYVKRDKMFLKNYKLDTVLSEYGINI--KVPHRAIEDVKII 259


>gi|167895415|ref|ZP_02482817.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 7894]
          Length = 350

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTG  +   RI EIG V +     +  T+   + P  +   P   +L GITD  ++ 
Sbjct: 19  DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P+F+ I    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ ++R 
Sbjct: 76  APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131

Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|89901349|ref|YP_523820.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
 gi|89346086|gb|ABD70289.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
          Length = 476

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 7/149 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+ETTG +  +DRI EI AV + +  +  R +   + P G   SP    L GI++  
Sbjct: 6   VLLDLETTGGNPVHDRITEIAAVRIENGQEVAR-WSTLVNP-GCSISPFIQHLTGISNAM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P F ++        +   A  +AHN +FD GF+  EL R+  D     + + T+ +
Sbjct: 64  VRGAPGFETVAQHLLALLD--GAVLVAHNVRFDHGFLLNELARL--DVALRVKTLCTVRL 119

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSK 157
           +R  +P  + + L+++ +R+GI    R +
Sbjct: 120 SRLLYPQHKGHGLDAIMQRHGIRTLERHR 148


>gi|116511811|ref|YP_809027.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116107465|gb|ABJ72605.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 277

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 8/128 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKN-SPEALKLHG 64
           + +VFD ETTG  ++ + II+IGAV+   Y + N+    F  L  N R   S E  +L G
Sbjct: 4   KYVVFDFETTGFSAQKNEIIQIGAVK---YDENNQELARFNQLVKNQRSYVSTEITQLTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I    L ++P+   I  +F DF   +    +AHNA FD+ F+   +       ++  R+ 
Sbjct: 61  IKPADLLNQPTIEEILPDFLDFI--KGHLLVAHNAPFDISFLYQAIIDCAITDVEAFRVY 118

Query: 125 DTLSIARR 132
           DTL+ +++
Sbjct: 119 DTLAESKK 126


>gi|301166002|emb|CBW25576.1| putative DNA polymerase III PolC-type alpha subunit [Bacteriovorax
           marinus SJ]
          Length = 295

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 11/164 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           +  D+ETTGL    D++IE+ A+++  Y +    F   + P  +   P+  + +HGIT++
Sbjct: 21  VALDLETTGLSPLIDKVIELSAIKVTPYGE--EVFDELIDP--KIEIPKFTIDIHGITND 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ K +   +  EF +F    +   +AHNAKFD+GFI   + +I   PL  S +  +  
Sbjct: 77  MVQGKRTLDKVLPEFINFIG--SLPLVAHNAKFDLGFIVFGMHQIGL-PLHESHVYCSCK 133

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +R     S N  L++L     I + +   H AL D+     VY
Sbjct: 134 FSRYALRGSTNFKLSTLTTELEIPLENH--HRALDDAIACLKVY 175


>gi|124265242|ref|YP_001019246.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
 gi|124258017|gb|ABM93011.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
          Length = 208

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+   +  R  EI AV L+   +    +Q  +  +G    P   +L GI++  
Sbjct: 6   VIDFETTGISPGQGARATEIAAV-LVRGGQIVGRYQSLM-NSGAWVPPFIEQLTGISNRM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+  P    +  E  DF        +AHNA FD GF  AE  R   D         TL +
Sbjct: 64  LERAPPAERVMREVLDF--TAGCPLVAHNAAFDRGFWQAERARAGCDEDAAHAFACTLLL 121

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ARR +P + N  L +L K + +    R+ H AL D+   + + ++M
Sbjct: 122 ARRLYPEAPNHRLGTLAKLHALPDGGRA-HRALADAETAAHLLLRM 166


>gi|239978772|ref|ZP_04701296.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 324

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 14/198 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRI+  G  +L    +    +   + P   +  P  + +HG+T   L
Sbjct: 21  VVDVETTGL-ARDDRIVSAGVYQLDALGRVEDHWYTLVNP---ERDPGPVWIHGLTTGVL 76

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLSI 129
           KD P F  I  E      ++    +AHNA FD   +  E  R  +  + P R  + T+++
Sbjct: 77  KDAPLFKDISDELSARLADRVL--VAHNAAFDWSMLAREYARAER--VAPVRQRLCTIAL 132

Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           ++    P   + L SL   +G+ +  R+ H AL D+ +L++ +   +V  +         
Sbjct: 133 SKELGLPLPNHKLESLAAHFGV-VQERAHH-ALDDARVLAEAFRPSLVAAAGGGVRLPLL 190

Query: 189 EDRFFKE--EKKTVPNIS 204
           E R   E  E    P I 
Sbjct: 191 ECRPLTEWSEPPATPRIG 208


>gi|30021712|ref|NP_833343.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 14579]
 gi|29897267|gb|AAP10544.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
          Length = 315

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH ++ + L +L +  GI +   S H A  D    + VY K
Sbjct: 126 AKKYMKH-ATNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|310641367|ref|YP_003946125.1| DNA polymerase iii, epsilon subunit [Paenibacillus polymyxa SC2]
 gi|309246317|gb|ADO55884.1| DNA polymerase III, epsilon subunit [Paenibacillus polymyxa SC2]
          Length = 245

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 10/172 (5%)

Query: 5   NKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KL 62
           +++  +VFD+ETTG  +++ D I+  GA+ ++      +  Q +   N R   PE + +L
Sbjct: 56  DRLETVVFDLETTGFSAQHGDEILSFGAIRVVGDVIMEKE-QFYTLVNPRTEIPEQITRL 114

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT E     P   +   +F  F   +    +AH +  D  F+NA L + +K  L   R
Sbjct: 115 TGITREMTDGAPPLMNGLHDFMSFVGGRVL--VAHASAHDKAFLNAALWKTSKVQLT-HR 171

Query: 123 IIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           ++DT+ +A+   P       L+ L     I I  R  H AL D+ + + +++
Sbjct: 172 VLDTMMLAKWLEPQQHQTYSLDELLAYQSIPIEGR--HHALEDAKMTAKLWV 221


>gi|281491483|ref|YP_003353463.1| DNA polymerase III subunit epsilon [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375201|gb|ADA64714.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis
           KF147]
          Length = 277

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 8/128 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKN-SPEALKLHG 64
           + +VFD ETTG  ++ + II+IGAV+   Y + N+    F  L  N R   S E  +L G
Sbjct: 4   KYVVFDFETTGFSAQKNEIIQIGAVK---YDENNQEQARFNQLVKNQRSYVSTEITQLTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I    L ++P+   I  EF DF   +    +AHNA FD+ F+   +       ++  R+ 
Sbjct: 61  IKPADLLNQPTIEEILPEFLDFI--KGHLLVAHNAPFDISFLYQAIIDCAITDVEAFRVY 118

Query: 125 DTLSIARR 132
           DTL+ +++
Sbjct: 119 DTLAESKK 126


>gi|257084662|ref|ZP_05579023.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|256992692|gb|EEU79994.1| DNA polymerase III [Enterococcus faecalis Fly1]
          Length = 929

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QAVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|326406526|gb|ADZ63597.1| DNA polymerase III subunit epsilon [Lactococcus lactis subsp.
           lactis CV56]
          Length = 277

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 8/128 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKN-SPEALKLHG 64
           + +VFD ETTG  ++ + II+IGAV+   Y + N+    F  L  N R   S E  +L G
Sbjct: 4   KYVVFDFETTGFSAQKNEIIQIGAVK---YDENNQEQARFNQLVKNQRSYVSTEITQLTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I    L ++P+   I  EF DF   +    +AHNA FD+ F+   +       ++  R+ 
Sbjct: 61  IKPADLLNQPTIEEILPEFLDFI--KGHLLVAHNAPFDISFLYQAIIDCAITDVEAFRVY 118

Query: 125 DTLSIARR 132
           DTL+ +++
Sbjct: 119 DTLAESKK 126


>gi|15672964|ref|NP_267138.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723925|gb|AAK05080.1|AE006332_9 DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 277

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 8/128 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKN-SPEALKLHG 64
           + +VFD ETTG  ++ + II+IGAV+   Y + N+    F  L  N R   S E  +L G
Sbjct: 4   KYVVFDFETTGFSAQKNEIIQIGAVK---YDENNQEQARFNQLVKNQRSYVSTEITQLTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I    L ++P+   I  EF DF   +    +AHNA FD+ F+   +       ++  R+ 
Sbjct: 61  IKPADLLNQPTIEEILPEFLDFI--KGHLLVAHNAPFDISFLYQAIIDCAITDVEAFRVY 118

Query: 125 DTLSIARR 132
           DTL+ +++
Sbjct: 119 DTLAESKK 126


>gi|294668271|ref|ZP_06733376.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309790|gb|EFE51033.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 493

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 13/174 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           ++ D+E TG +   DRI EI  +   D +  +   Q+    N ++N PE +  L GI DE
Sbjct: 22  VIIDLEATGGNPYTDRITEIAFLRF-DGNGVSSYRQLV---NPQRNIPEFVSNLTGIDDE 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P F+ +  +       +    +AHN+KFD  F+  E  R       P+  + T+ 
Sbjct: 78  MVADAPPFADLSDDL--LHRLRGTLLLAHNSKFDYTFLRHEFSRCRLSYAAPT--LCTVQ 133

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++RR +P   +++L+S+ +R+ I +S  S+H A+ D   L+D Y+++      I
Sbjct: 134 LSRRLYPQFFKHNLDSIIERHQIAVS--SRHRAMNDVLALAD-YLELTAASHGI 184


>gi|229174271|ref|ZP_04301804.1| DNA polymerase III alpha subunit [Bacillus cereus MM3]
 gi|228609128|gb|EEK66417.1| DNA polymerase III alpha subunit [Bacillus cereus MM3]
          Length = 318

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 88/167 (52%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P   ++ P+ +  L GIT+ 
Sbjct: 14  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNP--ERSIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      IAHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIIAHNASFDMRFLKSNVSMLGL-PEPQNKVIDTVF 127

Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 128 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170


>gi|229128882|ref|ZP_04257858.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
 gi|228654587|gb|EEL10449.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
          Length = 318

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 14  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH ++ + L +L +  GI +   S H A  D    + VY K
Sbjct: 129 AKKYMKH-ATNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170


>gi|124516571|gb|EAY58079.1| DNA polymerase III, epsilon subunit [Leptospirillum rubarum]
          Length = 265

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 13/173 (7%)

Query: 7   MRKIVFDIETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLH 63
           M+    D+ETTGL  DS+  RIIE+G     +     +T  +     G    P+ + K++
Sbjct: 1   MKVTFLDVETTGLLRDSRA-RIIELGFSSWENGKLLRKTSTLI---KGADIVPDNISKIN 56

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E LKD P F  ++       + Q +  +AHN  FDVG +N EL   ++ PL  +  
Sbjct: 57  GITTEMLKDAPRFEEVWKSIKG--DIQGSLLVAHNLAFDVGMVNRELILADRIPLG-NMG 113

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IDTL ++R+  P  S   L  + K  GI   + + H A+ D   L  +   ++
Sbjct: 114 IDTLPLSRKMLPELSSYRLGEIAKHMGIL--NENPHRAMGDLETLEKIVSNLL 164


>gi|256961321|ref|ZP_05565492.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|293383606|ref|ZP_06629516.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           R712]
 gi|293387281|ref|ZP_06631838.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           S613]
 gi|312906156|ref|ZP_07765168.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           DAPTO 512]
 gi|312909501|ref|ZP_07768356.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis DAPTO 516]
 gi|256951817|gb|EEU68449.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|291079118|gb|EFE16482.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           R712]
 gi|291083318|gb|EFE20281.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           S613]
 gi|310627802|gb|EFQ11085.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           DAPTO 512]
 gi|311290174|gb|EFQ68730.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis DAPTO 516]
          Length = 929

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V L+   K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCV-LVQEGKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|21684668|gb|AAM09079.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps]
          Length = 157

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 4/116 (3%)

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A  +HG+ DEFL  +P+F +I      F        + HN  FD+ F++A L      P 
Sbjct: 25  AQAVHGLRDEFLATQPTFCAIAQGLLFFLCRST--LVGHNLSFDLNFLDAGLASAGFMPT 82

Query: 119 D--PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 +IDT+    ++    R  L+S C   G+    R++HGAL D+ LL++ ++
Sbjct: 83  ARYCHGVIDTMPHLAQRGSRRRFSLDSCCDMLGVRREDRARHGALEDAVLLAEAFV 138


>gi|8134659|sp|O54364|RNT_PASHA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|2731432|gb|AAB93471.1| RNAse T [Mannheimia haemolytica]
          Length = 216

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET GL+++ D ++E+ A+ L +D   Y   ++     + P  G   +PE+LK +G
Sbjct: 23  VVIDVETAGLNAQTDALLELAAITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNG 82

Query: 65  I-TDEFLK----DKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFI-NAELQRIN- 114
           I  D  L+    +  +   +F        EQ  +    +AHNA  D GF   A ++RIN 
Sbjct: 83  IDIDNPLRGAVAENIAIPGMFIMVRKAMKEQGCQRGVIVAHNAASDPGFFYRAAIKRINA 142

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +DP  P  + DT ++A   +   +  L   C+   I    +  H AL D+   ++++  
Sbjct: 143 KRDPFHPFAMFDTATLAGFMY--GQTVLVKACQVAKIPFDGKQAHSALYDTERTAELFCA 200

Query: 174 MM 175
           M+
Sbjct: 201 MV 202


>gi|290956499|ref|YP_003487681.1| DNA exonuclease [Streptomyces scabiei 87.22]
 gi|260646025|emb|CBG69116.1| putative DNA exonuclease [Streptomyces scabiei 87.22]
          Length = 239

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 22/159 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD-- 67
           I FD+ETTG D +  RI+    +E+ D  +     + +L   G +   EA+ +HGIT+  
Sbjct: 9   IGFDLETTGTDPREARIVTGAVIEVRDGERIG--HREWLADPGVEIPEEAVAVHGITNAR 66

Query: 68  EFLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118
              + +P      + + +   +W          +A+NA FD+  ++AEL+R     L   
Sbjct: 67  AVAEGRPADRVADAIADVLVSYW----RTGVPVVAYNAAFDLSLLSAELRRHALPSLRDR 122

Query: 119 ---DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
              DP+ +ID  +I R   ++   + +L ++C  YG+ +
Sbjct: 123 LGTDPAPVIDPYTIDRSVDRYRRGKRNLEAVCGEYGVAL 161


>gi|239944923|ref|ZP_04696860.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998]
 gi|239991387|ref|ZP_04712051.1| DNA polymerase III [Streptomyces roseosporus NRRL 11379]
 gi|291448385|ref|ZP_06587775.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351332|gb|EFE78236.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 641

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 9/161 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ET+GL ++ DR++ +  + +    +    F   L P      P  +++HG+T E L
Sbjct: 22  LVDVETSGLVARRDRVLSVAVITIGPDGEQTGEFSTLLDPG---CDPGPVEVHGLTAERL 78

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P+F  +          Q+   +AHNA+FD  F+  E  R     L  S+ + TL++ 
Sbjct: 79  RGAPTFDQVAGRIGAML--QDRVLVAHNAQFDYDFLAHEFARARMW-LPVSQRLCTLALN 135

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           R+  P + +  L +L   Y   +  +  H AL D+ +L+ +
Sbjct: 136 RQVDPPTDDMKLGTLATHY--DVPQQRAHDALDDTRVLAGI 174


>gi|315634736|ref|ZP_07890020.1| ribonuclease T [Aggregatibacter segnis ATCC 33393]
 gi|315476684|gb|EFU67432.1| ribonuclease T [Aggregatibacter segnis ATCC 33393]
          Length = 217

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET GL++K D ++E+ A+ L +D +     ++     + P  G    PE++K +G
Sbjct: 23  VVIDVETAGLNAKTDALLELAAITLKMDDAGNLVPDQKCHFHIHPFEGANIDPESIKFNG 82

Query: 65  I-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQRIN-- 114
           I  D  L+   S +   SE +    +       Q +  +AHNA FD GF+ A  QR+N  
Sbjct: 83  IDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNASFDHGFVMAAAQRMNAK 142

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C+   I    +  H AL D+   ++++  M
Sbjct: 143 RNPFHPFSTFDTATLSGFMF--GQTVLVKACQAAKIPFDSQQAHSALYDTERTAELFCYM 200

Query: 175 M 175
           +
Sbjct: 201 V 201


>gi|317125104|ref|YP_004099216.1| DNA polymerase III subunit epsilon [Intrasporangium calvum DSM
           43043]
 gi|315589192|gb|ADU48489.1| DNA polymerase III, epsilon subunit [Intrasporangium calvum DSM
           43043]
          Length = 590

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 93/221 (42%), Gaps = 37/221 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           +V D+E+TG       I EIGAV++         FQ  + P   +  P  +  L GITD 
Sbjct: 21  VVVDLESTGGSPAQCGITEIGAVKVRGGDVIGE-FQTLVNPA--EPIPAFISVLTGITDA 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   S F  F +F     +  +AHNA FD+ F+ A   R    P     ++DTL+
Sbjct: 78  MVADSPRIESAFPAFLEF--AAGSVLVAHNAGFDISFLKAAAVRTGT-PWPGFDVLDTLT 134

Query: 129 IARR---KHPSSRNDLNSLCKRYG--ITISHRSKHGALLDSHLLSDVYIKMM--VGGSQI 181
           +AR+   +     + L+SL + +    T  HR+ H    D+    DV   ++  VG    
Sbjct: 135 LARQLVTRDEVPNHKLSSLARVFASPTTPDHRALH----DARATVDVLHGLIERVG---- 186

Query: 182 NFGFKTNED---------------RFFKEEKKTVPNISLLK 207
           N G  T E+               RF  +     P + L K
Sbjct: 187 NLGVHTLEELASYTSRVSPAQRRKRFLADALPHAPGVYLFK 227


>gi|149190366|ref|ZP_01868638.1| ribonuclease T [Vibrio shilonii AK1]
 gi|148835745|gb|EDL52710.1| ribonuclease T [Vibrio shilonii AK1]
          Length = 241

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L    + N          + P  G     EAL+  G
Sbjct: 44  VVVDVETAGFNAKTDALLEICAITLTMDDQGNLQPASVLHFHIEPFEGANLEKEALEFTG 103

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINA--ELQRI 113
           I D F  L+   S      E +    ++        A  +AHNA FD  F++A  E  ++
Sbjct: 104 IRDPFSPLRGAVSEQEALKEIYKVIRKEQKQHDCSRAIMVAHNANFDHSFVSAANERAKL 163

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++   +   +  L   CK  G+   +R  H AL D+   ++++ +
Sbjct: 164 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMEFDNREAHSALYDTQKTAELFCR 221

Query: 174 MM 175
           ++
Sbjct: 222 IV 223


>gi|262204572|ref|YP_003275780.1| exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
           DSM 43247]
 gi|262087919|gb|ACY23887.1| Exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
           DSM 43247]
          Length = 590

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 13/165 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           ++ D+ETTG +++ DR++ + A   LDY  +    +   L P      P  + +H +T +
Sbjct: 11  VLVDVETTGTNARRDRVLSL-ATMTLDYDGRVEDEYATLLNPG---CDPGPVHIHNLTRD 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127
            L   P+F    S        +    +AHNA FD GF+  E +R+    P+D  R+  T+
Sbjct: 67  RLHGAPTFDVTMSPLQQMLAGRT--MVAHNATFDHGFLVEEARRLGATLPID-HRLC-TV 122

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           ++ARR      N  L +L   +G  I  R+ H A  D   L++V+
Sbjct: 123 TLARRLQLDVPNVKLGTLATYWG--IRQRAAHDARDDVRTLAEVF 165


>gi|313674131|ref|YP_004052127.1| DNA polymerase iii, epsilon subunit [Marivirga tractuosa DSM 4126]
 gi|312940829|gb|ADR20019.1| DNA polymerase III, epsilon subunit [Marivirga tractuosa DSM 4126]
          Length = 465

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG  +  +RI EI A+ L D  K  + +Q  + P  R   P+   +HGI D+ +
Sbjct: 4   IVDIETTGGYAARNRICEI-AIILHDGEKVVKEYQTLINPE-RHIPPQLSAIHGINDQMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D P F        +   E N  ++AH+  FD  F+ A  Q +  + L   ++  T+ ++
Sbjct: 62  EDAPKFYEEAKTIHELL-EGNI-FVAHSVNFDYSFVKAAFQDLGYE-LKLKKLC-TVRLS 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R+  P  ++  L ++C+  GI I+ R  H A  D+   ++++ +++
Sbjct: 118 RKIFPGLKSYSLGNICENRGIKINDR--HRAFGDAIATAELFTQLV 161


>gi|291295885|ref|YP_003507283.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279]
 gi|290470844|gb|ADD28263.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279]
          Length = 267

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 15/182 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTGL   +  IIE+  + L +  +T   F+  + P G    P   +L GI  + 
Sbjct: 90  VVLDIETTGLSPTDHEIIELALIRLENGRRT--VFERLVNP-GVLIPPFISRLTGIRSQD 146

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D     ++  E W   +  NA  I  NA FD+GF+    +R+     +P  ++DT+  
Sbjct: 147 VRDAADIYTVLEEAWPLLD--NATLIIQNASFDLGFLQPRFKRLGYRLDNP--VVDTIHW 202

Query: 130 ARRKHPS-SRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVG----GSQI 181
           AR+  P  ++  L+SL   +    I   HR+         +  ++Y  +  G     SQ+
Sbjct: 203 ARKALPGLTKRGLDSLAWAFDLGPIPARHRAMGDVETTLQVAHEMYYMLTAGHPAPTSQL 262

Query: 182 NF 183
            F
Sbjct: 263 AF 264


>gi|315146656|gb|EFT90672.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4244]
          Length = 929

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V L+   K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCV-LVQEGKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|188533941|ref|YP_001907738.1| ribonuclease T [Erwinia tasmaniensis Et1/99]
 gi|188028983|emb|CAO96849.1| Ribonuclease T [Erwinia tasmaniensis Et1/99]
          Length = 218

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 22/201 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D+K + ++EI AV L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFDAKTNALLEIAAVTLKMDNDGWLVKDETLHFHVEPFPGSILLPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  S  +IF        +     A  +AHNA FD+ F+NA  +R  + 
Sbjct: 80  IDPANPLRGAVSEYESLHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   G+T      H AL D+   +D++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLV--LGQTVLAKACHAAGMTFDSSQAHSALYDTLQTADLFCEL 197

Query: 175 M-----VGGSQINFGFKTNED 190
           +     +GG  +    K++ D
Sbjct: 198 VNRWKRLGGWPLPLAAKSDAD 218


>gi|29376872|ref|NP_816026.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Enterococcus faecalis V583]
 gi|227519901|ref|ZP_03949950.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis TX0104]
 gi|29344337|gb|AAO82096.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Enterococcus faecalis V583]
 gi|227072695|gb|EEI10658.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis TX0104]
 gi|315574388|gb|EFU86579.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0309B]
 gi|315580138|gb|EFU92329.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0309A]
          Length = 929

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|150018035|ref|YP_001310289.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
           8052]
 gi|149904500|gb|ABR35333.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
           8052]
          Length = 1446

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 15/152 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDEF 69
           V D+ETTG   + ++I EIG +++ D  K    F  F+ P  +K+ P   +++  ITD+ 
Sbjct: 425 VLDLETTGFSPQTEKITEIGVMKIKD-GKVIDKFSTFVNP--QKSIPMRVVEVTKITDDM 481

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127
           +K+  +   +F +  +F   + +  +AHNA FD+GF+  NA++     D       IDTL
Sbjct: 482 VKNAETIDKVFPKLLEFI--EGSVLVAHNADFDIGFLKHNAKVLGYEFD----FTYIDTL 535

Query: 128 SIARRKHPSSRN-DLNSLCKRYGI--TISHRS 156
            +A+   P  ++  L  + K  GI   ++HR+
Sbjct: 536 GLAQDVFPDYKSYKLGRIAKNLGIKVEVAHRA 567


>gi|326522268|dbj|BAK07596.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 323

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 83/179 (46%), Gaps = 21/179 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKLHGITDE 68
           +VFDIETTG   + DRIIE    +L      N TFQ  + P    KN+     +HGI+  
Sbjct: 124 LVFDIETTGFSRRGDRIIEFAVRDLT--GGKNSTFQTLINPEREVKNA----AVHGISTN 177

Query: 69  FL--KDKPSFSSIFSEFWDF-FNEQNAE----WIAHNAK-FDVGFINAELQRINKDPLDP 120
            +   D P F         + ++ Q A     W+AHN K FDV F+  E QR  ++    
Sbjct: 178 MVCSSDIPRFGEFIPILLQYVWSRQVAGKPVMWVAHNGKTFDVPFLIFEFQRCKQEMPGD 237

Query: 121 SRIIDTLSIARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DTL IA++   S     S   + +L + Y I +  ++ H A+ D   L  V  K+
Sbjct: 238 WLFVDTLPIAKQLVDSNGKKISSASMKNLVEHYKIPVDGKA-HRAMRDVTALCYVLQKL 295


>gi|227553912|ref|ZP_03983959.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis HH22]
 gi|227176898|gb|EEI57870.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis HH22]
          Length = 929

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|157962392|ref|YP_001502426.1| ribonuclease T [Shewanella pealeana ATCC 700345]
 gi|157847392|gb|ABV87891.1| ribonuclease T [Shewanella pealeana ATCC 700345]
          Length = 232

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 28/196 (14%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NG 52
           + KN+ R    +V D+ET G ++K D ++EI AV +L          ++T    + P  G
Sbjct: 9   LMKNRFRGYFPVVIDVETAGFNAKTDALLEI-AVSMLKMDDEGVLALDKTLHFNIEPFEG 67

Query: 53  RKNSPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNAEW------IAHNAKF 101
               PEAL   GI         + +K +F  IF E       Q A        +AHNA F
Sbjct: 68  ANLEPEALAFTGIDPTSPLRGAVSEKEAFLEIFKEVK---KAQKAAGCHRSIIVAHNAAF 124

Query: 102 DVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
           D GF+   ++R  + + P  P    DT ++A          L   C   GI   +R  H 
Sbjct: 125 DHGFVTQAIERNALKRTPFHPFATFDTAALAGLA--IGHTVLAKACAMAGIPFDNREAHS 182

Query: 160 ALLDSHLLSDVYIKMM 175
           AL D+   ++++  ++
Sbjct: 183 ALYDTERTAELFCLIV 198


>gi|254000498|ref|YP_003052561.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4]
 gi|253987177|gb|ACT52034.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4]
          Length = 470

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 9/161 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+ETTG     DRI EI  +   +  + +R +Q  + P      P   +L GI D  
Sbjct: 6   VLLDLETTGATPLVDRITEIALIRFENGQEVSR-WQTLVNPE-TAIPPFIQRLTGIDDGM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P F  +  E  +    + A   AHN +FD GF+  E +RI  D     +++ T+ +
Sbjct: 64  VATAPRFREVAGELLNHL--EGAVLCAHNVRFDHGFLKNEFKRIGIDLRQ--KVLCTVKL 119

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           +R+ +P  R + L+S+ +R+ +     ++H A+ D   L D
Sbjct: 120 SRKLYPQHRSHSLDSIIERHSLQCG--ARHRAMGDVVALVD 158


>gi|315604561|ref|ZP_07879624.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313573|gb|EFU61627.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 525

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 15/178 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL ++ + I EIGAV + +  +    F   + P G    P    L GIT   
Sbjct: 11  VVVDLETTGLGARAE-ITEIGAVRVRE-GRLCEEFSSLVRPVG-PIPPAITALTGITPAM 67

Query: 70  LKDKPSFSSIFSEF--WDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++     +++   F  W  F  ++    +AHNA FD+GF+       +  P    R++DT
Sbjct: 68  VRGADPIATVLDRFLTWAGFEAKDPVVLVAHNAPFDIGFLRRAAAACSL-PWPRVRVVDT 126

Query: 127 LSIARRKHPSS--RN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGG 178
           L++AR   P    RN  L ++   +G        H AL D+   ++V   ++ ++ G 
Sbjct: 127 LALARLALPRPIVRNHKLATVASYFGTATV--PGHRALGDARATAEVLLGFVDLLAGA 182


>gi|257082037|ref|ZP_05576398.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|256990067|gb|EEU77369.1| DNA polymerase III [Enterococcus faecalis E1Sol]
          Length = 929

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|289772455|ref|ZP_06531833.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289702654|gb|EFD70083.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
          Length = 330

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 11/196 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRII      L    +    +   + P   +  P  + +HG+T + L
Sbjct: 27  VVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNP---QRDPGPVWIHGLTSDVL 82

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D P F  +  EF    + +    +AHNA FD   I  E  R  ++     R+  T++++
Sbjct: 83  RDAPLFPDVAEEFAARLDGRVL--VAHNAVFDWQMIAREYARAEREAPVRQRLC-TIALS 139

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           +    P   + L SL   +G+ +  R+ H AL D+ +L++ +   ++  +  +     +E
Sbjct: 140 KALDLPLPNHKLESLAAHFGV-VQQRAHH-ALDDARVLAEAFRPSLLAAAAGDVRLPLHE 197

Query: 190 DRFFKE-EKKTVPNIS 204
            R   E   +  P I 
Sbjct: 198 CRPLTEWSDRPAPRIG 213


>gi|114321155|ref|YP_742838.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227549|gb|ABI57348.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 729

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 90/174 (51%), Gaps = 10/174 (5%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKL 62
           + +  +VFD ETTGL  ++ D I+ I  V +++    +   F+  + P GR     ++  
Sbjct: 532 DALNYVVFDTETTGLSPAEGDEIVSIAGVRMVNGRLLDGERFEQLVNP-GRTIPRSSILF 590

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI D  + DKP   ++   F  F    ++  +AHNA FD+ FI  + +R      +P  
Sbjct: 591 HGIHDTTVADKPRIETVLPRFHTFVG--DSVLVAHNAAFDMKFIRLKERRCGVRFDNP-- 646

Query: 123 IIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++DTL ++   H  ++ + L ++  R G+ ++  ++H A  D+ + + V+  ++
Sbjct: 647 VLDTLLLSVFLHDHTADHTLEAIAARLGVEVT--AQHTAWGDALVTARVFACLL 698


>gi|229031267|ref|ZP_04187273.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271]
 gi|228730025|gb|EEL80999.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271]
          Length = 315

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P   ++ P+ +  L GIT+ 
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNP--ERSIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVF 124

Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|297584389|ref|YP_003700169.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           selenitireducens MLS10]
 gi|297142846|gb|ADH99603.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           selenitireducens MLS10]
          Length = 935

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 11/156 (7%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R ++ D+ETTG+   K DRII+I A ++L+  +  + F  ++  N  K  P  ++ L GI
Sbjct: 3   RYVILDLETTGVAYDKGDRIIQI-AYQVLEDQEVLKRFSTYI--NYDKPVPAFIQSLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + E LK+ P F  +  E      E  A ++AHN +FD+ F+N  L+           +ID
Sbjct: 60  SGEHLKNAPLFEEVAPEILSDLEE--AYFVAHNVEFDLKFLNESLEDAGYASFQ-GPVID 116

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160
           T+ +AR   PS  +  L+ L K   +  +H + H A
Sbjct: 117 TVELARICLPSEDSYRLSDLAK--TVQATHTAPHQA 150


>gi|125624340|ref|YP_001032823.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124493148|emb|CAL98112.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071124|gb|ADJ60524.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 277

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 8/128 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKN-SPEALKLHG 64
           + +VFD ETTG  ++ + II+IGAV+   Y + N+    F  L  N R   S E  +L G
Sbjct: 4   KYVVFDFETTGFSAQKNEIIQIGAVK---YDENNQELARFNQLVKNQRSYVSTEITQLTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I    L ++P+   I  +F DF   +    +AHNA FD+ F+   +       ++  R+ 
Sbjct: 61  IKPADLLNQPTIEEILPDFLDFI--KGHLVVAHNAPFDISFLYQAIIDCAITDVEAFRVY 118

Query: 125 DTLSIARR 132
           DTL+ +++
Sbjct: 119 DTLAESKK 126


>gi|167623615|ref|YP_001673909.1| ribonuclease T [Shewanella halifaxensis HAW-EB4]
 gi|167353637|gb|ABZ76250.1| ribonuclease T [Shewanella halifaxensis HAW-EB4]
          Length = 231

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 28/196 (14%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NG 52
           + KN+ R    +V D+ET G ++K D ++EI AV +L          ++T    + P  G
Sbjct: 9   LLKNRFRGYFPVVIDVETAGFNAKTDALLEI-AVSMLKMDDEGVLSLDKTLHFNIEPFEG 67

Query: 53  RKNSPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNAEW------IAHNAKF 101
               PEAL   GI         + +K +F  IF E       Q A        +AHNA F
Sbjct: 68  SNLEPEALAFTGIDPTSPLRGAVSEKEAFLEIFKEVK---KAQKAAGCHRSIIVAHNAAF 124

Query: 102 DVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
           D GF+   ++R  + + P  P    DT ++A          L   C   GI   +R  H 
Sbjct: 125 DHGFVTQAIERNALKRTPFHPFATFDTAALAGLA--IGHTVLAKACAMAGIAFDNREAHS 182

Query: 160 ALLDSHLLSDVYIKMM 175
           AL D+   ++++  ++
Sbjct: 183 ALYDTERTAELFCLIV 198


>gi|120599313|ref|YP_963887.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1]
 gi|120559406|gb|ABM25333.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1]
          Length = 298

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 3/105 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ETTGL+++ D+IIEI A++    S  +  F+  + P   K   +   + GIT++ 
Sbjct: 20  IALDAETTGLEAETDKIIEIAAIKFDLLSNDHPVFESLINP-AVKVPRKITNITGITNKM 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           L D+P F+ +  +   F    +   +A+NAKFD GF++AE   + 
Sbjct: 79  LVDQPPFAELAQDLKAFIG--DLPIVAYNAKFDKGFLDAEFANVG 121


>gi|167772669|ref|ZP_02444722.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
           17241]
 gi|167665147|gb|EDS09277.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
           17241]
          Length = 866

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFD+E+TG D   D I++I AV L         F+ FLCP+    + E  ++HG +D
Sbjct: 511 RVVVFDVESTGADVYTDDIVQIAAVRLSPGGGEAVRFERFLCPSRPVGASE--RVHGFSD 568

Query: 68  EFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            FL +      +   +F DF   +    + HN  FD+   +  L R        +   DT
Sbjct: 569 AFLAENGGAPCAALEDFLDF--SKGCVLVGHNVMFDLTITSQNLARAGSVQTLSNVWYDT 626

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163
           L I+RR      N  L+++    G   +H   H A+ D
Sbjct: 627 LDISRRYMKDLPNHKLSTVSAALG--AAHDPSHNAMDD 662


>gi|291450661|ref|ZP_06590051.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
 gi|291353610|gb|EFE80512.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 345

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 14/198 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRI+  G  +L    +    +   + P   +  P  + +HG+T   L
Sbjct: 42  VVDVETTGL-ARDDRIVSAGVYQLDALGRVEDHWYTLVNP---ERDPGPVWIHGLTTGVL 97

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLSI 129
           KD P F  I  E      ++    +AHNA FD   +  E  R  +  + P R  + T+++
Sbjct: 98  KDAPLFKDISDELSARLADRVL--VAHNAAFDWSMLAREYARAER--VAPVRQRLCTIAL 153

Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           ++    P   + L SL   +G+ +  R+ H AL D+ +L++ +   +V  +         
Sbjct: 154 SKELGLPLPNHKLESLAAHFGV-VQERAHH-ALDDARVLAEAFRPSLVAAAGGGVRLPLL 211

Query: 189 EDRFFKE--EKKTVPNIS 204
           E R   E  E    P I 
Sbjct: 212 ECRPLTEWSEPPATPRIG 229


>gi|269794889|ref|YP_003314344.1| exonuclease, DNA polymerase III subunit epsilon family
           [Sanguibacter keddieii DSM 10542]
 gi|269097074|gb|ACZ21510.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Sanguibacter keddieii DSM 10542]
          Length = 616

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 10/164 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG  SK+  I EIGAV++         FQ  + P G        +L GIT   
Sbjct: 63  VVVDLETTGGSSKDAGITEIGAVKVRGGEVIGE-FQSLVNP-GHPVPAFIARLTGITTLM 120

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   PS   +   F +F   +    +AHNA FD+ F+ A  + ++      ++++DT+ +
Sbjct: 121 VSSAPSIELVLPSFLEF--ARGTVLVAHNAPFDISFLKAAARSMDLA-WPGNQVLDTVPL 177

Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ARR   +  +  + L +L   +  TI+    H AL D+    DV
Sbjct: 178 ARRVVTRDEAPNHKLGTLAALFRATIT--PDHRALSDARATVDV 219


>gi|326568596|gb|EGE18667.1| ribonuclease T [Moraxella catarrhalis BC7]
          Length = 232

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 87/211 (41%), Gaps = 24/211 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++  D ++EI  V +L  +  N          + P +G    P ALK  G
Sbjct: 22  VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81

Query: 65  ITDE--FLK-----DKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN 114
           I  +  F K     +K +   IF        E        + HNA FD+GF+NA + R N
Sbjct: 82  INPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLNAAIARTN 141

Query: 115 K---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                P     ++DT+S A   +      L   C   GI   ++  H AL D+   ++++
Sbjct: 142 SKNHSPFHTFSVLDTVSFAALTY--GHTVLAKTCMIAGIEFDNQHAHSALYDAQKTAELF 199

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPN 202
             ++      N    TN     + +  T P+
Sbjct: 200 CHIV----NQNTLLSTNHANLTQNDTPTSPH 226


>gi|108800255|ref|YP_640452.1| hypothetical protein Mmcs_3289 [Mycobacterium sp. MCS]
 gi|119869383|ref|YP_939335.1| hypothetical protein Mkms_3351 [Mycobacterium sp. KMS]
 gi|108770674|gb|ABG09396.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
 gi|119695472|gb|ABL92545.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
          Length = 630

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 33/177 (18%)

Query: 10  IVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALK 61
           +V D+ETTG  +  +R   I EIGAV++       R  +V      L   GR   P+ + 
Sbjct: 31  VVVDLETTGGRATGERPDAITEIGAVKV-------RGGEVLGELATLVDPGRAIPPQIVS 83

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDP 120
           L GIT   +   P   S+   F +F   + +  +AHNA FD+GF+ A  ++     P  P
Sbjct: 84  LTGITTAMVCAAPRIESVLPAFLEF--ARGSVLVAHNAGFDIGFLRAAAEQCALTWPRPP 141

Query: 121 SRIIDTLSIARR-----KHPSSRNDLNSLCK--RYGITISHRSKHGALLDSHLLSDV 170
             ++ T+ +ARR     + PS R  L++L +  R   T +HR    AL D+    DV
Sbjct: 142 --VLCTVKLARRVLTRDEAPSVR--LSALAQLFRAKTTPTHR----ALDDARATVDV 190


>gi|294140465|ref|YP_003556443.1| exonuclease [Shewanella violacea DSS12]
 gi|293326934|dbj|BAJ01665.1| exonuclease [Shewanella violacea DSS12]
          Length = 232

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 19/200 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R N M     D+E TGLD  +D+I+ IG + +     K +R     +  +G  +  ++  
Sbjct: 44  RANLM---ALDLEMTGLDPNHDQILSIGIIPIEAGMLKLDRAQHKLIRVHG--SVGQSAT 98

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI D  L+D        S  W     +    +AH+A  D+ F+   + R+  +P+   
Sbjct: 99  IHGILDRHLQDAIEIEDGIS--WFLAQTRGKVLVAHHAPLDISFLQDAISRVKGEPVT-L 155

Query: 122 RIIDTLSIARRKHPSSRNDLNS------LCK-RYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDTL++ RR+    +  L +       C+ RYG+ I     H AL+D+    ++ +  
Sbjct: 156 LAIDTLAVERRRLLRKQEVLQTGSLRLGACRIRYGLPIY--GAHDALVDALACGELLLAQ 213

Query: 175 MVGGSQINFGFKTNEDRFFK 194
           +   +Q   G    E  F K
Sbjct: 214 ICAIAQ-GEGLTVGELVFIK 232


>gi|325286963|ref|YP_004262753.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489]
 gi|324322417|gb|ADY29882.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489]
          Length = 221

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 91/175 (52%), Gaps = 15/175 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTG   + DR++ IGA++L +       +F+VF+  +    + E  ++HGI  E
Sbjct: 37  VVLDTETTGFSYQEDRMLCIGALKLKNNDINIGDSFEVFIHQDHY--NQETAEIHGILKE 94

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               +         F  +   +N+  +AH+A FDV FIN  L+R +  P   ++I+DT +
Sbjct: 95  GKTTRLEELETLKLFLAYL--KNSVIVAHHAGFDVTFINMALER-HSLPKLKNKILDTST 151

Query: 129 IARRKHPSS-------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           + ++    S          L+ L +++ I++  R  H AL D+++ +  ++K++V
Sbjct: 152 LYKKTLIRSNLLVKKEHYSLDELAEKFSISVKDR--HTALGDAYITAIAFLKILV 204


>gi|229151805|ref|ZP_04280004.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
 gi|228631618|gb|EEK88248.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
          Length = 318

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 9/165 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 14  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 72  VSDAPTIEEVLPLFLAFLHAN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++    + N  L +L +  GI +   S H A  D    + VY K
Sbjct: 129 AKKYMKQAPNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170


>gi|312875182|ref|ZP_07735195.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           2053A-b]
 gi|311089289|gb|EFQ47720.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           2053A-b]
          Length = 299

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 14/161 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALK-LHGITD 67
           ++ D+ETTGLD  N+ IIEIGA+      K  +  + + C   +  + P A+K L GI+D
Sbjct: 132 VIIDLETTGLDYINNNIIEIGAI------KIAKNIEEYSCIVKQNITLPNAIKILTGISD 185

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             LK+    S    E   F  ++    + +N  FD+ FIN  L+R  +  L  +++ D +
Sbjct: 186 AELKNGKDESVAIKELCTFIGDK--ALVGYNVNFDIRFINEALKRNGQSQL-TNKVYDVM 242

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLL 167
              +R     +N  L+++   YGI I  +  H A+ D  ++
Sbjct: 243 KYVKRDKMFLKNYKLDTVLSEYGINI--KVPHRAIEDVKII 281


>gi|294339674|emb|CAZ88034.1| putative protein fusion of DNA polymerase III, epsilon subunit and
           Excinuclease ABC, C subunit [Thiomonas sp. 3As]
          Length = 469

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 9/159 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+ETTG +   DRI E+ AV  ++  +    +   + P G++  P   +L GI D  
Sbjct: 6   VLLDLETTGSNPVLDRITEV-AVMRVEQGEVVAKWSRLVNP-GQRIPPFIQQLTGIDDAM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P+F  +  E     +   A  +AHN +FD GF+     R   D     + + T+ +
Sbjct: 64  VAGAPAFGEVLPELLAALD--GAVLVAHNVRFDHGFLKQAAAREGVDLR--VKTLCTVRL 119

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLL 167
           +R+ +P +R + L+++ +R+G+  +  ++H A+ D  LL
Sbjct: 120 SRKLYPQARGHGLDAIMRRHGLHTT--ARHRAMGDVELL 156


>gi|290962326|ref|YP_003493508.1| DNA polymerase III subunit epsilon [Streptomyces scabiei 87.22]
 gi|260651852|emb|CBG74981.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
           [Streptomyces scabiei 87.22]
          Length = 613

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 28/230 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ET+GL    DR++ +  + L         F   L P+     P  + +HG+T + L
Sbjct: 21  LVDVETSGLRPGRDRVLSLSILTLDAQGNQTGEFSTLLNPD---CDPGPVHVHGLTADRL 77

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIIDTLSI 129
              P+F  I  +     + +    +AHNA+FD  F+  E  ++    P+  SR + TL++
Sbjct: 78  AGAPAFEEIAPQVGALLSSR--VLVAHNAQFDYDFLAHEFAQVRSWAPV--SRRLCTLAL 133

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
            R   P++ +  L +L   YG  +     H A  D  +LS +    +    Q+       
Sbjct: 134 NRLVGPATPDLKLGTLAAHYG--VRQEKAHDAQDDVRVLSGILRGSLSAAEQLGLALPVL 191

Query: 189 EDRFFKEEKKTVPNISLLKRDK-------PLF----------TRITKEEL 221
                ++ +  VP      R+        PL           TR+++EEL
Sbjct: 192 GCPPRQDYRPYVPKTPCAYRNPGRMAPGGPLVQGMKVAITGDTRVSREEL 241


>gi|21220316|ref|NP_626095.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)]
 gi|256788562|ref|ZP_05526993.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|6117870|emb|CAB59443.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
           [Streptomyces coelicolor A3(2)]
          Length = 328

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 11/196 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRII      L    +    +   + P   +  P  + +HG+T + L
Sbjct: 25  VVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNP---QRDPGPVWIHGLTSDVL 80

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D P F  +  EF    + +    +AHNA FD   I  E  R  ++     R+  T++++
Sbjct: 81  RDAPLFPDVAEEFAARLDGRVL--VAHNAVFDWQMIAREYARAEREAPVRQRLC-TIALS 137

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           +    P   + L SL   +G+ +  R+ H AL D+ +L++ +   ++  +  +     +E
Sbjct: 138 KALDLPLPNHKLESLAAHFGV-VQQRAHH-ALDDARVLAEAFRPSLLAAAAGDVRLPLHE 195

Query: 190 DRFFKE-EKKTVPNIS 204
            R   E   +  P I 
Sbjct: 196 CRPLTEWSDRPAPRIG 211


>gi|33151799|ref|NP_873152.1| ribonuclease T [Haemophilus ducreyi 35000HP]
 gi|54036330|sp|Q7VND8|RNT_HAEDU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|33148020|gb|AAP95541.1| ribonuclease T [Haemophilus ducreyi 35000HP]
          Length = 214

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 23/184 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++ D+ET GL++K D ++E+ A+         L+   K +   Q F   N   N+ ++LK
Sbjct: 21  VIIDVETAGLNAKTDALLELAAITVKMDQQGYLVPDQKCHFHIQPF--ENANINA-DSLK 77

Query: 62  LHGI-----TDEFLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRI 113
            +GI         + +  +   +F        EQ  +    +AHNA FD  F+ A ++RI
Sbjct: 78  FNGIDIHNPLRGAVAEAIAIPEMFKMVRRAIKEQGCQRAVIVAHNATFDQAFLQAAVKRI 137

Query: 114 N--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           N  +DP  P  + DT S+A   +   +  L   C+   I    +  H AL D+   ++++
Sbjct: 138 NAKRDPFHPFAMFDTASLAGLMY--GQTVLVKACQIANIAFDGKQAHSALYDTEKTTELF 195

Query: 172 IKMM 175
             M+
Sbjct: 196 CAMV 199


>gi|324327507|gb|ADY22767.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 315

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++  N  ++ P+ +  L GIT+ 
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYV--NPERSIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVF 124

Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|315173642|gb|EFU17659.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1346]
          Length = 929

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|312899802|ref|ZP_07759121.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0470]
 gi|311293052|gb|EFQ71608.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0470]
 gi|315146017|gb|EFT90033.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2141]
          Length = 929

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|307287736|ref|ZP_07567779.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0109]
 gi|306501474|gb|EFM70777.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0109]
 gi|315164835|gb|EFU08852.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1302]
          Length = 929

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|257421980|ref|ZP_05598970.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
 gi|257163804|gb|EEU93764.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
 gi|315155308|gb|EFT99324.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0043]
          Length = 929

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|256763069|ref|ZP_05503649.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|257079582|ref|ZP_05573943.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|294779459|ref|ZP_06744857.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis PC1.1]
 gi|307270866|ref|ZP_07552153.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4248]
 gi|312903707|ref|ZP_07762881.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0635]
 gi|256684320|gb|EEU24015.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256987612|gb|EEU74914.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|294453465|gb|EFG21869.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis PC1.1]
 gi|306512779|gb|EFM81424.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4248]
 gi|310632899|gb|EFQ16182.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0635]
 gi|315166434|gb|EFU10451.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1341]
          Length = 929

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|255972155|ref|ZP_05422741.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|255963173|gb|EET95649.1| DNA polymerase III [Enterococcus faecalis T1]
          Length = 929

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|228928662|ref|ZP_04091698.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229123127|ref|ZP_04252334.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
 gi|228660421|gb|EEL16054.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
 gi|228830981|gb|EEM76582.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 315

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++  N ++  P+ +  L GIT+ 
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYV--NPKRPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|228986699|ref|ZP_04146829.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773030|gb|EEM21466.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 315

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P   ++ P+ +  L GIT+ 
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNP--ERSIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|71667552|ref|XP_820724.1| exonuclease [Trypanosoma cruzi strain CL Brener]
 gi|70886080|gb|EAN98873.1| exonuclease, putative [Trypanosoma cruzi]
          Length = 223

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 53/218 (24%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVE-------LLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M  I  D+ETTG  ++ D ++ IGAVE       L  +    R+F   + P+ + +S +A
Sbjct: 1   MSAICVDLETTGFSAQRDDVVSIGAVELRWDGTTLQQWVLGARSFFRTVRPS-KPSSHQA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFF------------NEQN---------------- 91
             +HG++ E L+D P    + S+F  F              E+N                
Sbjct: 60  EAVHGLSFEMLRDAPPLEDVISDFAAFLIQLDGNLPQSGQTEENYRAKPGDLSAKKRCTA 119

Query: 92  ----------AEWIAHNAKFDVGFINAELQ----RINKDPLDPSRIIDTLSIARRKHPSS 137
                        IAHNA FD  F+   +     R+  D   P  +  T S+ R  +   
Sbjct: 120 ATTAGCVLTLPPVIAHNANFDASFLQRAVSRAGWRVVWDEYAP--LTCTQSMFRALYSHQ 177

Query: 138 RNDLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKM 174
             DL+  C+  G+  S R  +H AL D+ L   +++++
Sbjct: 178 AADLSRACQFCGVDTSGRDERHDALHDAQLCGRLFLRL 215


>gi|94501331|ref|ZP_01307852.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65]
 gi|94426602|gb|EAT11589.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65]
          Length = 738

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 85/164 (51%), Gaps = 11/164 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           ++ D+ETTG   +  R+ E+G V++L+    +  +Q  + P   ++ P+++ +L GI++E
Sbjct: 574 VIVDVETTGGRKEQHRVTEVGMVKVLNGEIVDE-WQSLINP--MRHIPQSITRLTGISNE 630

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P F  +  E  +F     + ++AHN  FD GF  +E +R+ +    P   + T+ 
Sbjct: 631 MVSNAPVFDDVADEIAEFC--AGSVFVAHNVNFDYGFFRSEFERLGRRFHAPK--LCTVQ 686

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           ++R+  P  S   L  LC    + I   + H AL D+   + V+
Sbjct: 687 MSRKYLPGHSSYSLGKLCA--ALDIDLENHHRALDDAKAAAHVF 728


>gi|226325409|ref|ZP_03800927.1| hypothetical protein COPCOM_03214 [Coprococcus comes ATCC 27758]
 gi|225206152|gb|EEG88506.1| hypothetical protein COPCOM_03214 [Coprococcus comes ATCC 27758]
          Length = 231

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 11/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGLD   + IIEIGA+++ D  K    F  F+ P   + SP    L GIT+E 
Sbjct: 6   VCFDLETTGLDPLYNEIIEIGALKVRD-GKVAERFMEFIHPQ-EEISPMITNLTGITNEM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLS 128
           + +     ++ S+F +F   ++   I HN  FD  F+ +    +    L   +  IDT  
Sbjct: 64  VANARPADAVISDFLEFC--EDDVLIGHNVGFDYSFMKSGASNLG---LTFEKFGIDTFK 118

Query: 129 IARR-KHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHL 166
           IA+R         L+SLC+ Y I    +HR+ + AL  + L
Sbjct: 119 IAQRTLKSLPSKSLSSLCEYYQIENKAAHRAYYDALATAKL 159


>gi|114562633|ref|YP_750146.1| ribonuclease T [Shewanella frigidimarina NCIMB 400]
 gi|122300177|sp|Q084K7|RNT_SHEFN RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|114333926|gb|ABI71308.1| RNAse T [Shewanella frigidimarina NCIMB 400]
          Length = 221

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-----TNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G ++  D ++EI AV LL  +       +RT    + P  G    P AL  +
Sbjct: 20  VVIDVETAGFNANTDALLEI-AVSLLKMNSDGVIVLDRTLHFNIEPFEGANLEPAALAFN 78

Query: 64  GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113
           GI  T+     + +K +F  IF E        +      +AHNA FD+GF+N  ++R  +
Sbjct: 79  GIDPTNPLRGAVDEKVAFLEIFKEVKKAQKAADCHRSIIVAHNAAFDLGFVNKAIERNGL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT ++A          L   CK  GI   ++  H AL D+   ++++  
Sbjct: 139 KRSPFHPFASFDTATLAGLA--IGHTVLAKACKMAGIDFDNKEAHSALYDTERTAELFCL 196

Query: 174 MM 175
           ++
Sbjct: 197 IV 198


>gi|315504521|ref|YP_004083408.1| DNA polymerase iii, epsilon subunit [Micromonospora sp. L5]
 gi|315411140|gb|ADU09257.1| DNA polymerase III, epsilon subunit [Micromonospora sp. L5]
          Length = 584

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG       I EIGAV++    +        + P G    P    L GIT   
Sbjct: 33  VVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITQAM 90

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P    +   F +F +  +A  +AHNA +DVGF+ A   +      +P R++DT ++
Sbjct: 91  LLPAPPIEQVLPSFLEFIS--DAVLVAHNAPYDVGFLKAACAKHGYRWPNP-RVLDTAAL 147

Query: 130 ARR 132
           ARR
Sbjct: 148 ARR 150


>gi|169627433|ref|YP_001701082.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus ATCC
           19977]
 gi|169239400|emb|CAM60428.1| DNA polymerase III, epsilon subunit (DnaQ) [Mycobacterium
           abscessus]
          Length = 327

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ET+G      R+I + A+ + D   T     V L   G    P    +HG+T E 
Sbjct: 15  VVVDLETSGFQPGRARVISVAALAM-DADGTITDSVVSLLNPGVDPGPT--HVHGLTPEM 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+ +P FS I  +       +    +AHN  FD  F+ AE + +  + L    ++ T+ +
Sbjct: 72  LEGQPEFSDIAPDLIALLRGRTL--VAHNVGFDYSFLAAEAELVGAE-LPTEAVMCTVEL 128

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            RR    + N  L +L   +G  +     H A  D+ +L++V  K++
Sbjct: 129 TRRLELDTPNLRLETLAAHWG--VEQLKAHDAYDDARVLAEVLPKVL 173


>gi|323481332|gb|ADX80771.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           62]
          Length = 929

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|315150174|gb|EFT94190.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0012]
          Length = 929

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|257416585|ref|ZP_05593579.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
 gi|257158413|gb|EEU88373.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
          Length = 929

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|256853717|ref|ZP_05559082.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|307291048|ref|ZP_07570934.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0411]
 gi|256710660|gb|EEU25703.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|306497897|gb|EFM67428.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0411]
 gi|315030986|gb|EFT42918.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4000]
          Length = 929

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|256617168|ref|ZP_05474014.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|307277210|ref|ZP_07558314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2134]
 gi|256596695|gb|EEU15871.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|295113409|emb|CBL32046.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus sp. 7L76]
 gi|306506140|gb|EFM75306.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2134]
          Length = 929

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|229549451|ref|ZP_04438176.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis ATCC 29200]
 gi|256956656|ref|ZP_05560827.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|257419833|ref|ZP_05596827.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|300861259|ref|ZP_07107346.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
           faecalis TUSoD Ef11]
 gi|312953414|ref|ZP_07772254.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0102]
 gi|229305688|gb|EEN71684.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis ATCC 29200]
 gi|256947152|gb|EEU63784.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|257161661|gb|EEU91621.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|300850298|gb|EFK78048.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
           faecalis TUSoD Ef11]
 gi|310628623|gb|EFQ11906.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0102]
 gi|315152082|gb|EFT96098.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0031]
 gi|315159114|gb|EFU03131.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0312]
 gi|315170323|gb|EFU14340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1342]
 gi|327535661|gb|AEA94495.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis OG1RF]
          Length = 929

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|42782681|ref|NP_979928.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 10987]
 gi|42738607|gb|AAS42536.1| DNA polymerase III, epsilon subunit, putative [Bacillus cereus ATCC
           10987]
          Length = 315

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++  N  ++ P+ +  L GIT+ 
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYV--NPERSIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|196034235|ref|ZP_03101645.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
 gi|228947225|ref|ZP_04109519.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|195993309|gb|EDX57267.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
 gi|228812472|gb|EEM58799.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 315

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++  N ++  P+ +  L GIT+ 
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYV--NPKRPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|304403858|ref|ZP_07385520.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus
           YK9]
 gi|304346836|gb|EFM12668.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus
           YK9]
          Length = 244

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 10/170 (5%)

Query: 10  IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITD 67
           IVFD+ETTG    N D II  GAV L+   +       +   N ++  P  + +L GIT+
Sbjct: 61  IVFDLETTGFYPYNGDEIISFGAV-LVKGDEIFEDVSFYSLVNPKRRIPMHITQLTGITN 119

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++  P    +  +F +F   +    +AH +  D  F+NA L R +K  L   R++DT+
Sbjct: 120 EMVEGAPDLMQVLHDFMEFVGRRIL--LAHGSGHDKQFLNAALWRTSKVNLT-HRLLDTM 176

Query: 128 SIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +A+   P   +   L+ L +   I I+ R  H AL DS + + +++  +
Sbjct: 177 MVAKWLEPKRPDGYGLDELLESANIPIADR--HHALKDSIMTAKLWMAYL 224


>gi|218231342|ref|YP_002368423.1| DNA polymerase III subunit epsilon [Bacillus cereus B4264]
 gi|229146178|ref|ZP_04274553.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
 gi|296504117|ref|YP_003665817.1| DNA polymerase III subunit epsilon TlpA [Bacillus thuringiensis
           BMB171]
 gi|218159299|gb|ACK59291.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           B4264]
 gi|228637237|gb|EEK93692.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
 gi|296325169|gb|ADH08097.1| DNA polymerase III subunit epsilon tlpA [Bacillus thuringiensis
           BMB171]
          Length = 315

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A++  KH +  + L +L +  GI +   S H A  D    + VY K +
Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQKCV 169


>gi|330446493|ref|ZP_08310145.1| ribonuclease T [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490684|dbj|GAA04642.1| ribonuclease T [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 218

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L +D   + K   T    + P  G   + EAL+ +G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVAPFEGAILNKEALEFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFW-DFFNEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 80  IRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHSFVMAASERAKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C+   I   +R  H AL D+   ++++ +
Sbjct: 140 KRNPFHPFATFDTAALSGLAF--GQTVLAKACQTANIPFDNREAHSALYDTERTAELFCE 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|89094681|ref|ZP_01167617.1| ribonuclease T [Oceanospirillum sp. MED92]
 gi|89081027|gb|EAR60263.1| ribonuclease T [Oceanospirillum sp. MED92]
          Length = 209

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 22/201 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S+ D ++EI AV L      +   +++F+  + P  G      AL   G
Sbjct: 11  VVVDVETAGFNSRTDALLEIAAVTLTMDENGFLMIDQSFEAQVEPFEGANLEQSALDFTG 70

Query: 65  ITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I       E + ++ +   IF              A  + HNA FD GF+NA   R  I 
Sbjct: 71  IDPYDPDREAVPERDAMEEIFKPVRKAIKAHGCKRAVLVGHNASFDQGFVNAAANRADIK 130

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++        +  L   C+  GI    +  H AL D+   ++++  +
Sbjct: 131 RNPFHPFSTFDTATLGGLAF--GQTVLARACQVAGIEFDGKQAHSALYDTMKTAELFCLI 188

Query: 175 M-----VGGSQINFGFKTNED 190
           +     +GG ++   F+ +E+
Sbjct: 189 VNRWKELGGWEMAESFQDDEE 209


>gi|315161735|gb|EFU05752.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0645]
          Length = 929

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|315035644|gb|EFT47576.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0027]
          Length = 929

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|315032870|gb|EFT44802.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0017]
          Length = 929

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|257087406|ref|ZP_05581767.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|256995436|gb|EEU82738.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|315025444|gb|EFT37376.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2137]
          Length = 929

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|256963550|ref|ZP_05567721.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|307271490|ref|ZP_07552762.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0855]
 gi|256954046|gb|EEU70678.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|306511762|gb|EFM80760.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0855]
          Length = 929

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|255975219|ref|ZP_05425805.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|307285838|ref|ZP_07565972.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0860]
 gi|255968091|gb|EET98713.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|306502599|gb|EFM71866.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0860]
          Length = 929

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|24373798|ref|NP_717841.1| DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1]
 gi|24348190|gb|AAN55285.1|AE015666_9 DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1]
          Length = 212

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL  ++  R IEIGAV L++  +    F   + P  R N+       GI+++
Sbjct: 14  VVLDFETSGLSPNQGARAIEIGAV-LIEQGQITTRFSELMNPGFRINA-FIEDYTGISNQ 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L      + + + F +F  + +   +AHNA FD  F++AE   I        +   +L 
Sbjct: 72  MLAHAAPCAEVMARFAEFIGKHH--LVAHNAAFDQRFLDAEFAHIGHQ--YSGQFGCSLL 127

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +ARR +P + N   +   R+    ++ + H AL D+ +   ++++M+ 
Sbjct: 128 LARRLYPEAINHQLATLVRHKQLPNNGTFHRALADAEMTGHLWLRMLA 175


>gi|52141929|ref|YP_084901.1| DNA polymerase III subunit epsilon [Bacillus cereus E33L]
 gi|51975398|gb|AAU16948.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
          Length = 315

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 69  VSDAPTIEEVLPVFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|71907013|ref|YP_284600.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71846634|gb|AAZ46130.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 204

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 11/163 (6%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D ETTGL  ++ DR  EI AV +L+  K    +Q  +  N     P  + +L GI++ 
Sbjct: 6   VIDFETTGLSPAQGDRATEIAAV-ILENGKVVDRYQSLM--NAGVRIPSFIEQLTGISNA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P  + +  E  DF    +   +AHNA FD  F +AE+ RIN           +L 
Sbjct: 63  MIRSAPPAAQVMREVSDFVG--DIPLVAHNASFDCKFWDAEVARINLQRCQ--EFACSLL 118

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +ARR  P +  + L +L +   + ++ R+ H AL D+ + + +
Sbjct: 119 LARRLMPLAPSHKLGALIEFAKLPVAGRA-HRALADAEMAASL 160


>gi|47567894|ref|ZP_00238601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
 gi|47555372|gb|EAL13716.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
          Length = 303

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 14  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F ++     +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 72  VSDAPTIEEVLPLFLAFLHKN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 129 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170


>gi|228966505|ref|ZP_04127558.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793227|gb|EEM40777.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 315

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|229117071|ref|ZP_04246451.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
 gi|228666360|gb|EEL21822.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
          Length = 315

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGF-PEPKNKVIDTVFL 125

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|118478852|ref|YP_896003.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al
           Hakam]
 gi|196038559|ref|ZP_03105868.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           NVH0597-99]
 gi|196044683|ref|ZP_03111918.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB108]
 gi|225865592|ref|YP_002750970.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB102]
 gi|229092581|ref|ZP_04223732.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
 gi|229185845|ref|ZP_04313018.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
 gi|118418077|gb|ABK86496.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|196024718|gb|EDX63390.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB108]
 gi|196030967|gb|EDX69565.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           NVH0597-99]
 gi|225789766|gb|ACO29983.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB102]
 gi|228597557|gb|EEK55204.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
 gi|228690734|gb|EEL44510.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
          Length = 315

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVLL 125

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|54023690|ref|YP_117932.1| hypothetical protein nfa17220 [Nocardia farcinica IFM 10152]
 gi|54015198|dbj|BAD56568.1| putative DNA polymerase III subunit [Nocardia farcinica IFM 10152]
          Length = 598

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 14/166 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG   + D I EIGAV++    +    F   + P GR   P  +++ GIT   
Sbjct: 28  VVVDLETTGTSPEGDAITEIGAVKVRG-GEVLGEFATLVNP-GRAIPPAVVQVTGITTAL 85

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P   ++   F +F     A  +AHNA+FD              P   + ++ T+ +
Sbjct: 86  VYAAPRIEAVLPGFLEF--AAGAVLVAHNARFDT-AFLRAAAARCALPWPDAPVLCTVKL 142

Query: 130 ARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ARR     + PS R  L SL +  G   S +  H AL D+    DV
Sbjct: 143 ARRVLGRDEAPSVR--LASLARLLG--ASTQPTHRALDDARATVDV 184


>gi|229080815|ref|ZP_04213333.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
 gi|229191695|ref|ZP_04318674.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
 gi|228591857|gb|EEK49697.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
 gi|228702549|gb|EEL55017.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
          Length = 318

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 14  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 129 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170


>gi|228922317|ref|ZP_04085624.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837372|gb|EEM82706.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 318

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 14  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 129 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170


>gi|229098054|ref|ZP_04229002.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
 gi|228685245|gb|EEL39175.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
          Length = 318

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 14  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNYR 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGF-PEPKNKVIDTVFL 128

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 129 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170


>gi|206969177|ref|ZP_03230132.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH1134]
 gi|229071110|ref|ZP_04204336.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
 gi|206736218|gb|EDZ53376.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH1134]
 gi|228712050|gb|EEL63999.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
          Length = 315

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|302869008|ref|YP_003837645.1| DNA polymerase III subunit epsilon [Micromonospora aurantiaca ATCC
           27029]
 gi|302571867|gb|ADL48069.1| DNA polymerase III, epsilon subunit [Micromonospora aurantiaca ATCC
           27029]
          Length = 584

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG       I EIGAV++    +        + P G    P    L GIT   
Sbjct: 33  VVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITQAM 90

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P    +   F +F +  +A  +AHNA +DVGF+ A   +      +P R++DT ++
Sbjct: 91  LLPAPPIEQVLPSFLEFVS--DAVLVAHNAPYDVGFLKAACAKHGYRWPNP-RVLDTAAL 147

Query: 130 ARR 132
           ARR
Sbjct: 148 ARR 150


>gi|170733343|ref|YP_001765290.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|169816585|gb|ACA91168.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 212

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL     DR  EI  + L D    +R FQ  +   GR+   + + L GIT++ 
Sbjct: 13  VLDFETTGLSPNLGDRATEIAVILLRDGQVVDR-FQSLMN-AGRRIPSDVVALTGITNDM 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  S +  E   F  +     +AHNA FD  F  +EL  +            T+ +
Sbjct: 71  IATAPPASEVMKEAAAFVGKHAV--VAHNAGFDKRFWQSELGMLGMSA--DHAFACTMLV 126

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ARR +P +R+  L+SL +   +  + R+ H A++D+ +   ++ ++
Sbjct: 127 ARRIYPDARSHRLSSLAEMLRLPQTGRA-HRAMVDAEMAGHLWCRL 171


>gi|189501071|ref|YP_001960541.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1]
 gi|189496512|gb|ACE05060.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1]
          Length = 180

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 25/172 (14%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLH 63
           R +  D+ETTGL   + DR+IE+ AV ++     N   +   C     N+P      K+H
Sbjct: 12  RVVAVDVETTGLSPLRGDRVIEVAAVAIV-----NGVIEEHFCCLINVNAPIPTVVQKIH 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E L  +    +++ EF +F        IAHNA FD+ FI  ELQ +    L+ S+ 
Sbjct: 67  GITPELLAGEKPPEAVWPEFLNFIGSNI--LIAHNAPFDISFIRNELQLLGLSLLNGSQC 124

Query: 124 IDTLSIARRKHPS---------SRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             TL+ +R+K P          +R+ L  + K  GI + HR+   ALL + +
Sbjct: 125 --TLAFSRKKFPQLKSHKLDNVARHVLGGMPK--GIKL-HRASGDALLTAMI 171


>gi|218904738|ref|YP_002452572.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH820]
 gi|218538798|gb|ACK91196.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH820]
          Length = 315

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++  N ++  P+ +  L GIT+ 
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYV--NPKRPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++    + N  L +L +  GI +   S H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNYKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|163848613|ref|YP_001636657.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526548|ref|YP_002571019.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl]
 gi|163669902|gb|ABY36268.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450427|gb|ACM54693.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl]
          Length = 278

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 77/177 (43%), Gaps = 7/177 (3%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I FD+ETTGL+     RI E+  +      +  R     + P  R+  P+A +++G+   
Sbjct: 16  IFFDVETTGLEIQAGHRICEVAMLRWEHGQEVGR-INTLINPE-RELDPQAAQINGLQPA 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L + P F+ I  +       QNA  IAHN  FD  F+N EL R    P      +DTL 
Sbjct: 74  ELNNAPLFTDIAPQVVQL--SQNAVRIAHNLPFDESFLNMELCRAGYPPFT-GPALDTLE 130

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           +ARR      +  L +L   +G+          +L    L D ++  M+    I  G
Sbjct: 131 LARRLGIRRGSLSLAALATTFGLPAPTHRAMDDVLTLRALFDHFVNEMISFGIITLG 187


>gi|332523978|ref|ZP_08400230.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332315242|gb|EGJ28227.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 820

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 10/165 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+E T   S + RII+IG V +++  K   +FQ  + P+  K S     L GITD+ L
Sbjct: 10  VIDLEATNAGS-DARIIQIGIV-IVEDKKIINSFQTDINPHS-KLSEHIKSLTGITDQQL 66

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P FS +  E ++    ++  ++AHN KFD   ++  L     D L P   +DT+ +A
Sbjct: 67  ATAPEFSQVAGEIFELI--KDCVFVAHNVKFDANLLSEALFFEGFDLLTPR--VDTVELA 122

Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +   P+  + +L  L K   + +SH   H A+ D+   + ++IK+
Sbjct: 123 QVFFPNLEKYNLGHLAKNMDLNLSH--AHTAISDALATAKLFIKI 165


>gi|228953879|ref|ZP_04115918.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805847|gb|EEM52427.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 315

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|160901638|ref|YP_001567219.1| DNA polymerase III, epsilon subunit [Petrotoga mobilis SJ95]
 gi|160359282|gb|ABX30896.1| DNA polymerase III, epsilon subunit [Petrotoga mobilis SJ95]
          Length = 187

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 9/178 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITD 67
           +  D ETTGL+ +  DRIIEI A+ + D  K N  +      N     P E  K H + +
Sbjct: 9   LALDFETTGLNPELGDRIIEIAAIPIYD-KKINFKYAFHTLVNPNIFIPGEVSKFHKLNN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + + PS S +F  F ++ ++     ++HN K D+ F++   +      +D +  IDTL
Sbjct: 68  QDISNAPSLSEVFPRFKEYIDDSII--VSHNVKMDLRFLDIAAKESGMFSID-NYYIDTL 124

Query: 128 SIARRKHPSSRNDLNSLCKRY--GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            I++        +L  L K++  GI   HR+   AL  + L    YIK+    + INF
Sbjct: 125 EISKYYFDKGPYNLEFLSKKFNLGIKQFHRAWDDALSTAKLFQK-YIKLFSFEAIINF 181


>gi|229047293|ref|ZP_04192892.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
 gi|228724035|gb|EEL75381.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
          Length = 318

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 14  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 129 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170


>gi|240146656|ref|ZP_04745257.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82]
 gi|257201200|gb|EEU99484.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82]
          Length = 226

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 15/180 (8%)

Query: 3   RKNKMRK------IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           RK K R+      +++D+ETTG+ S  D +IEI AV++ +  K    F   + P GR   
Sbjct: 5   RKGKQRREYVRDYVLYDLETTGISSLYDEVIEISAVKVRN-GKIVDEFSELVNP-GRPIP 62

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINK 115
             A  ++ I+D+ +++  SF  +  EF  F  +       HN A FD+ F+  + ++   
Sbjct: 63  YAASSVNNISDKMVENARSFEKVLPEFLAFAGDD--VLAGHNIAGFDMKFLYRDCEKYFG 120

Query: 116 DPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             L  +  IDTL+IA+   P  ++  L+ L + YG  IS +  H AL D  +   V+  M
Sbjct: 121 QTL-TNDYIDTLAIAKLCFPEWKHRKLSDLAEHYG--ISTKGAHRALADCRMNQQVFELM 177


>gi|307545334|ref|YP_003897813.1| ribonuclease T [Halomonas elongata DSM 2581]
 gi|307217358|emb|CBV42628.1| ribonuclease T [Halomonas elongata DSM 2581]
          Length = 221

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 19/183 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D I+EI AV L    + N     T+   + P  G      AL   G
Sbjct: 20  VVVDLETGGFNAKGDAILEIAAVTLTMDPEGNLMPDATYAYHVTPFEGANVEQSALDFTG 79

Query: 65  I-TDEFLK------DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR-- 112
           I  D+ L+      +  +   IF              A  + HNA FD GF+NA ++R  
Sbjct: 80  IRLDDPLRRQVAVSEAEALGEIFRPVRKAIKAHGCTRAILVGHNAAFDHGFLNAAVERCA 139

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I ++P  P    DT S+A   +   +  L   C+  GI   + + H A  D+   ++++ 
Sbjct: 140 IKRNPFHPFSSFDTASLAGLIY--GQTVLARACRAAGIEFDNGAAHSARYDTERTAELFC 197

Query: 173 KMM 175
            M+
Sbjct: 198 AMI 200


>gi|257090540|ref|ZP_05584901.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
 gi|256999352|gb|EEU85872.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
 gi|315578691|gb|EFU90882.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0630]
          Length = 929

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           K+K    V D+ETTG D  +DRII+ G V + D  K    F   + PN  +  P+ ++ L
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL  P+
Sbjct: 65  TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYDFLARELVRCGTPPLTIPA 122

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ +
Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170


>gi|75760700|ref|ZP_00740725.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228902109|ref|ZP_04066273.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
 gi|74491818|gb|EAO55009.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228857535|gb|EEN02031.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
          Length = 318

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 14  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 129 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170


>gi|218898703|ref|YP_002447114.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           G9842]
 gi|218544955|gb|ACK97349.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           G9842]
          Length = 315

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|154174963|ref|YP_001408508.1| DNA polymerase III subunit epsilon [Campylobacter curvus 525.92]
 gi|112803051|gb|EAU00395.1| nickel transport permease component NikD [Campylobacter curvus
           525.92]
          Length = 273

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 100/196 (51%), Gaps = 17/196 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           + DIET+G    + +IIEIGA+++ +  +  R F+ F+        PE + +L GI+   
Sbjct: 78  IVDIETSG-GITSGQIIEIGALKIKNGVEIGR-FESFV---DAPFVPENITQLTGISQSD 132

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   PS  S+   F  F     + ++AHN  FD GFI+  L  I    L  +R + T+ +
Sbjct: 133 LTGAPSLKSVLERFKIFLG--TSVFVAHNVNFDYGFISQSLSNIGLGML-LNRKLCTIDL 189

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           +RR   S +  L SL +  GI  +H   H AL D+   +++ +K+ +  S++ F  ++ E
Sbjct: 190 SRRTIASQKYGLGSLKELLGINNTH---HRALNDAIAATEI-LKICI--SRLPFSIQSVE 243

Query: 190 DRFFKEEKKTVPNISL 205
           D       KT P++ L
Sbjct: 244 DLI--NFSKTAPSMKL 257


>gi|325696784|gb|EGD38672.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK160]
          Length = 814

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 91/173 (52%), Gaps = 12/173 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62
           +N  +  V D+E TG  S   +II+IG V L++     +T++  + P+   +  E +K L
Sbjct: 3   QNDYKYAVVDLEATGTGS-GAKIIQIGIV-LIENGSITKTYETDVNPHEELD--EHIKEL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P  
Sbjct: 59  TGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTPR- 115

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +DT+ +A+  +P+  +  L +LC    + IS  + H AL D+   + +++K+
Sbjct: 116 -VDTVELAQVFYPTFDKYSLGNLCDL--LDISLENAHTALADAQATAQLFLKI 165


>gi|229111034|ref|ZP_04240593.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
 gi|228672397|gb|EEL27682.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
          Length = 318

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 14  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 129 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170


>gi|307297316|ref|ZP_07577122.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916576|gb|EFN46958.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 182

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 24/179 (13%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS---PEAL-- 60
           M  +V D ETTG++  +  ++IE+  V + ++          LC +   +S   PE +  
Sbjct: 1   MEFVVIDTETTGMNPYRGAKLIEVAGVRVKNWE---------LCRDDFFDSLIDPECIIP 51

Query: 61  ----KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
                L GI++  +KDK +   +   F+ F    +A  + HNA FD+ FIN    +    
Sbjct: 52  IAITALTGISNLTVKDKSTVCDVLRGFYSF--AGDATLVIHNAPFDLSFINFYGDKCGLG 109

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            L  ++ IDT+ +++      RN+L+ L  R GI     S+H AL D+   ++ ++ M+
Sbjct: 110 KLR-NQFIDTIEVSKAVFRYGRNNLDILLARLGII--PESRHRALGDALATAEAFVAML 165


>gi|228959796|ref|ZP_04121471.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228799926|gb|EEM46868.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 318

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 14  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 129 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170


>gi|229104149|ref|ZP_04234821.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
 gi|228679166|gb|EEL33371.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
          Length = 315

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGF-PEPKNKVIDTVFL 125

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|229075504|ref|ZP_04208492.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
 gi|228707600|gb|EEL59785.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
          Length = 318

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 14  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNYR 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGF-PEPKNKVIDTVFL 128

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 129 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170


>gi|229179896|ref|ZP_04307242.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W]
 gi|228603577|gb|EEK61052.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W]
          Length = 315

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIIDTLS 128
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +    L+P +++IDT+ 
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL--LEPKNKVIDTVF 124

Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|332307350|ref|YP_004435201.1| ribonuclease T [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174679|gb|AEE23933.1| ribonuclease T [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 211

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G +++ D ++E+ A+   +D   Y   ++TF   + P  G      AL+ +G
Sbjct: 18  VIVDVETAGFNAQTDALLEVAAITTKMDADGYLTPDKTFHYHVVPFEGANLEKAALEFNG 77

Query: 65  I---------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113
           I          DE    K     I  E  D  + Q +  +AHNA FD+GFINA ++R  I
Sbjct: 78  IDPWCALRGALDETEVMKDLCKQIRKEQKDA-DCQRSVMVAHNAAFDLGFINAAIERSKI 136

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT ++A       +  L   C+   I+      H AL D+   +++Y  
Sbjct: 137 KRTPFHPFVSFDTTTLAGLA--LGQTVLVKACQAANISFDQSEAHSALYDTQKTAELYCY 194

Query: 174 MM 175
           ++
Sbjct: 195 IV 196


>gi|260102980|ref|ZP_05753217.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
 gi|260083211|gb|EEW67331.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
 gi|328464560|gb|EGF35931.1| DNA polymerase III [Lactobacillus helveticus MTCC 5463]
          Length = 317

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 8/156 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTGL    DRI E+G V++ +    ++   +   P   K      KL+GIT+E L
Sbjct: 35  MLDVETTGLSPFRDRITELGGVKVRNGQIVDQYTNLVKFPKNNKVPAFITKLNGITEEQL 94

Query: 71  KDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+  +I  EF +F  +     I +N  FD+ F+    Q+ N  P+  +  +D L 
Sbjct: 95  TNEGIPAEQAI-KEFREFIGDDTI--IGYNVNFDLNFLYDLSQKYNL-PVLNNDYVDVLR 150

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +AR  +P   N L    +R G  I+   +H  L DS
Sbjct: 151 LARVYYPRQHNRLIDCMQRAG--IAQVEQHHGLADS 184


>gi|194333861|ref|YP_002015721.1| DNA polymerase III subunit epsilon [Prosthecochloris aestuarii DSM
           271]
 gi|194311679|gb|ACF46074.1| DNA polymerase III, epsilon subunit [Prosthecochloris aestuarii DSM
           271]
          Length = 232

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 92/185 (49%), Gaps = 18/185 (9%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFL-CPNGRKNSPEALKLHG 64
           +R +VFD ETTG D   D +I IGAV +++ S   + +F+V + C   R    +A+ +HG
Sbjct: 43  VRYVVFDTETTGFDLSRDNVISIGAVAVMNGSIDISDSFEVLIRCD--RVGDGDAVSVHG 100

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +    L    +       F ++  +  +  +A +A FD+  +NA ++R     L  + ++
Sbjct: 101 LLRRDLVGGCNEREALDGFLNYIGD--SILVAQHAGFDIAMMNAIMRRHYHMEL-LNDVL 157

Query: 125 DTLSIARR---------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT S+A+R          H S    L+SL +RY I +  R  H +  D+ L + ++ +++
Sbjct: 158 DTASLAKRLEKGPYYNLAHKSGEYRLDSLLERYHIRLYDR--HTSAGDAFLTAQLFQRLL 215

Query: 176 VGGSQ 180
              + 
Sbjct: 216 YSAAS 220


>gi|163848275|ref|YP_001636319.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526189|ref|YP_002570660.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl]
 gi|163669564|gb|ABY35930.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450068|gb|ACM54334.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl]
          Length = 232

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 17/176 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALKLHGITDE 68
           V D+ETTGLD+++D +I +GAV + +     +   + +   P  R+ S E++++H +T  
Sbjct: 39  VIDVETTGLDTRHDALIAVGAVNIENGRVLLKQTWYSLIKPPPDREPSVESIRVHHLTPA 98

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ----RINKDPLDPSRII 124
            L++ P    + +E            + H A+ DV FINA L+    ++ +  LD +R+ 
Sbjct: 99  ELQNAPPAEEVLAEL--LRRIAGRVLVVHVAQVDVRFINAALKPFGGKLRRPILDTARLA 156

Query: 125 DTLSIARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            TL +  R         P    +L  L    G+ +   ++H AL D+   + ++I 
Sbjct: 157 LTLHMNARWLGEQPHDMPDPAIELRGLATALGLPVY--AQHNALNDAVTTAQLFIA 210


>gi|322822112|gb|EFZ28257.1| exonuclease, putative [Trypanosoma cruzi]
          Length = 271

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 90/218 (41%), Gaps = 53/218 (24%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVE-------LLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M  I  D+ETTG  ++ D I+ IGAVE       L  +    R+F   + P+ + +S +A
Sbjct: 49  MSAICVDLETTGFSAQCDDIVSIGAVELRWDGTTLQQWVLGARSFFRTVRPS-KPSSHQA 107

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFF------------NEQN---------------- 91
             +HG++ E L+D P    + S+F  F              E+N                
Sbjct: 108 EAVHGLSFEMLRDAPPLEDVISDFAAFLIQLDDNLAQSGQTEENYCAKPGDLSAKKRCTA 167

Query: 92  ----------AEWIAHNAKFDVGFINAELQ----RINKDPLDPSRIIDTLSIARRKHPSS 137
                        IAHNA FD  F+   +     R+  D   P  +  T S+ R  +   
Sbjct: 168 ATTAGCVLTLPPVIAHNANFDASFLQRAVSGAGWRVVWDEYAP--LTCTQSMFRALYSHQ 225

Query: 138 RNDLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKM 174
             DL+  C+  G+  S R  +H AL D+ L   +++++
Sbjct: 226 AADLSRACQFCGVDTSGRDERHDALHDAQLCGRLFLRL 263


>gi|225352024|ref|ZP_03743047.1| hypothetical protein BIFPSEUDO_03631 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157271|gb|EEG70610.1| hypothetical protein BIFPSEUDO_03631 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 196

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 82/160 (51%), Gaps = 11/160 (6%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67
           IV D ETTGL   K  ++IEIGAV++ +    +   Q+    N  ++ P  +  L GI D
Sbjct: 23  IVIDTETTGLSVRKGAKLIEIGAVKIRNDELVDEFDQLI---NPFEHVPSRITGLTGIDD 79

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN--AELQRINKDPLDPSRIID 125
             L  KP    +  EF  + ++  A  +AHNA FD+ F++   +L    +D       +D
Sbjct: 80  GMLLGKPDVREVMDEFARWCSD-TAVVMAHNASFDMSFLDNAVQLAYSERDARFAHHFVD 138

Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164
           TL ++RR HP  R + +++L   Y   I+   +H AL D+
Sbjct: 139 TLDLSRRLHPEKRSHKVSTLIVDY--HIADMEEHRALSDA 176


>gi|254247914|ref|ZP_04941235.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|124872690|gb|EAY64406.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
          Length = 212

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL     DR  EI  + L D    +R FQ  +   GR+   + + L GIT++ 
Sbjct: 13  VLDFETTGLSPNLGDRATEIAVILLRDGQVVDR-FQSLMN-AGRRIPSDVVALTGITNDM 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  S +  E   F  +     +AHNA FD  F  +EL  +            T+ +
Sbjct: 71  IATAPPASEVMKEAAAFVGKHAV--VAHNAGFDKRFWQSELGMLGMSA--DHAFACTMLV 126

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ARR +P +R+  L+SL +   +  + R+ H A++D+ +   ++ ++
Sbjct: 127 ARRIYPDARSHRLSSLAEMLRLPQTGRA-HRAMVDAEMAGHLWCRL 171


>gi|119026003|ref|YP_909848.1| putative DNA polymerase III epsilon subunit [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765587|dbj|BAF39766.1| putative DNA polymerase III epsilon subunit [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 207

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 73/163 (44%), Gaps = 11/163 (6%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N     V D ETTGL  +K DR IEIG V +          +  +  +    S  A  +H
Sbjct: 2   NSQGYAVVDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLIHVD---RSVGASWVH 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSR 122
            IT   L   P F  I  E  D    +   ++AHN  FD  F+ AE  R+    P+D S 
Sbjct: 59  HITARELLHAPDFEGIAHELRDLLAGRV--FVAHNVSFDSRFLLAEYSRMGASIPVDQST 116

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           ++ T+ ++R      R  L   C+ +G  I++   H AL D+H
Sbjct: 117 MLCTMKLSRSL--IGRGKLADCCEYFG--IANEDAHSALSDAH 155


>gi|291531551|emb|CBK97136.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium siraeum 70/3]
          Length = 361

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 13/151 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           + DIETTGL   ND IIEIGA+ + D    N+    F  L    +  S    ++ GITD+
Sbjct: 11  IVDIETTGLSPDNDNIIEIGALRVRD----NKIVADFSQLIKASKPLSKTISQITGITDD 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D        S+F  F +  N   + HN  FD  FI+ +      D  + +   DTL+
Sbjct: 67  MLADAKELDDTLSDFLRFVD--NDTVVGHNIAFDANFISKKCVAYGLDFKNDTY--DTLA 122

Query: 129 IARRKHPSSRNDLNSLCKRYGI---TISHRS 156
             ++++P   + L  +  + GI    I HR+
Sbjct: 123 ACKQEYPDVSHKLEDMIIQLGIKDSGIHHRA 153


>gi|322833483|ref|YP_004213510.1| ribonuclease T [Rahnella sp. Y9602]
 gi|321168684|gb|ADW74383.1| ribonuclease T [Rahnella sp. Y9602]
          Length = 238

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 22/209 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   + +++ T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAKTDALLEIAAITLKMDEDGWLQSDETVHFHVEPFEGAILVPEALAFNG 90

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +   IF        EQN   A  +AHNA FD  F+ A  +R  + 
Sbjct: 91  IDPTNPLRGAVSEYEALHEIFKVIRKGMKEQNCNRAIIVAHNANFDHSFLMAAAERAGLK 150

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D+   ++++ ++
Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACISAGIVFDSSQAHSALYDTERTAELFCEL 208

Query: 175 M-----VGGSQINFGFKTNEDRFFKEEKK 198
           +     +GG  +    +  ED    EE +
Sbjct: 209 VNRWKRLGGWPLALSDEEVEDETASEENQ 237


>gi|308068487|ref|YP_003870092.1| DNA polymerase III subunit epsilon [Paenibacillus polymyxa E681]
 gi|305857766|gb|ADM69554.1| DNA polymerase III, epsilon chain [Paenibacillus polymyxa E681]
          Length = 245

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 10/172 (5%)

Query: 5   NKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KL 62
           +++  +VFD+ETTG  +++ D I+  GA+ ++      +  Q +   N R   PE + +L
Sbjct: 56  DRLETVVFDLETTGFSAQHGDEILSFGAIRVVGDMVMEKE-QFYTLVNPRTVIPEHITEL 114

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT E     P   +   +F  F   +    +AH +  D  F+NA L + +K  L   R
Sbjct: 115 TGITREMTDQAPPLMNGLHDFMSFVGGRVL--VAHASAHDKAFLNAALWKTSKVQLT-HR 171

Query: 123 IIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           ++DT+ +A+   P       L+ L     I I  R  H AL D+ + + +++
Sbjct: 172 VLDTMMLAKWLEPQQHQTYSLDELLAYQSIPIEGR--HHALEDAKMTAKLWV 221


>gi|228916240|ref|ZP_04079810.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843438|gb|EEM88516.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 315

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|328479965|gb|EGF49008.1| DNA polymerase III PolC [Lactobacillus rhamnosus MTCC 5462]
          Length = 132

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 5/122 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P G   S   + L  ITD+ 
Sbjct: 14  VVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDP-GFPLSELTINLTHITDDM 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    S   +F  F  F +   A  + HN  FDVGF++   +R     +D + +IDTL +
Sbjct: 72  VHGSKSEEEVFRLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLEL 128

Query: 130 AR 131
           +R
Sbjct: 129 SR 130


>gi|291537849|emb|CBL10960.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis XB6B4]
          Length = 226

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 104/224 (46%), Gaps = 29/224 (12%)

Query: 3   RKNKMRK------IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           RK K R+      +++D+ETTG+ S  D +IEI AV++ +  K    F   + P GR   
Sbjct: 5   RKGKQRREYVPDYVLYDLETTGISSLYDEVIEISAVKVRN-GKIVDEFSELVNP-GRPIP 62

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINK 115
             A  ++ I+D+ +++  SF  +  EF  F  +       HN A FD+ F+  + ++   
Sbjct: 63  YAASSVNNISDKMVENARSFEKVLPEFLAFAGDD--VLAGHNIAGFDMKFLYRDCEKYFG 120

Query: 116 DPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             L  +  IDTL+IA+   P  ++  L+ L + YG  IS +  H AL D  +   V+  M
Sbjct: 121 QTLT-NDYIDTLAIAKLCFPEWKHRRLSDLAEHYG--ISTKGAHRALADCRMNQQVFELM 177

Query: 175 M--VGGSQINFGFKTNEDRFFKEEKKTVPNISL-LKRDKPLFTR 215
               GG+              + E+K  P   L LK+    F R
Sbjct: 178 AKESGGTSAK-----------QTEEKICPRCGLALKKRNGRFGR 210


>gi|308235755|ref|ZP_07666492.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14018]
          Length = 301

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 21/166 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA----LKLHGIT 66
           V D ETTGL +  D IIEIG + + +    +R  Q+       K S E       L GIT
Sbjct: 18  VLDTETTGLSAYYDEIIEIGILRVRNNEIVDRYDQLI------KPSIEVDGFITALTGIT 71

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ L+D PS SS+ ++   F +E     + HN  FD+ F+N       K+ L  ++ +DT
Sbjct: 72  NDMLEDMPSISSVKNDVLSFISEDII--LGHNTSFDMRFLNEGF----KEQL-SNQYMDT 124

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +  AR+ +P  ++  L+ L    G+   H ++H AL D     ++Y
Sbjct: 125 MQFARKLYPELKHHRLSDLTDYLGL---HNNEHRALADCIATKELY 167


>gi|206560423|ref|YP_002231187.1| putative exonuclease [Burkholderia cenocepacia J2315]
 gi|198036464|emb|CAR52360.1| putative exonuclease [Burkholderia cenocepacia J2315]
          Length = 205

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL     DR  EI  + L D    +R FQ  +   GR+   + + L GIT++ 
Sbjct: 6   VLDFETTGLSPNLGDRATEIAVILLRDGEVVDR-FQSLM-NAGRRIPSDVVALTGITNDM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  S +  E   F  +     +AHNA FD  F  +EL  +            T+ +
Sbjct: 64  IAAAPPASEVMKEAAAFVGKHAV--VAHNAGFDKRFWQSELGLLGMSA--DHAFACTMLV 119

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ARR +P +R+  L+SL +   +  S R+ H A++D+ +   ++ ++
Sbjct: 120 ARRIYPDARSHRLSSLIEMLRLPQSGRA-HRAMVDAEMAGHLWCRL 164


>gi|227529135|ref|ZP_03959184.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350979|gb|EEJ41270.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           vaginalis ATCC 49540]
          Length = 960

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 17/171 (9%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D+ETTG   +  DRII++G V + D    N  F+  + P  R   P  + +L GI + 
Sbjct: 27  VVDLETTGTSVNHGDRIIQVGCVLVQDGEIINH-FETKINP--RVAVPRHITQLTGIKNN 83

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P F  I    +   +     ++AHN  FD  F+NAEL+R     L   + IDT++
Sbjct: 84  DVRNAPLFEDIAGTLYSLLS--GTIFVAHNVNFDFPFLNAELERAGYPSLS-IKAIDTVT 140

Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +++   P+ ++    DL S      ++I H   H A+ D+   + + + +M
Sbjct: 141 LSQILMPTVKSYRLRDLTS-----SLSIEHDHPHSAVSDAEATAHLLVDLM 186


>gi|206976138|ref|ZP_03237047.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           H3081.97]
 gi|217961012|ref|YP_002339580.1| DNA polymerase III subunit epsilon [Bacillus cereus AH187]
 gi|222097065|ref|YP_002531122.1| DNA polymerase iii subunit epsilon [Bacillus cereus Q1]
 gi|229140223|ref|ZP_04268781.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
 gi|206745592|gb|EDZ56990.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           H3081.97]
 gi|217066526|gb|ACJ80776.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH187]
 gi|221241123|gb|ACM13833.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
 gi|228643309|gb|EEK99582.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
          Length = 315

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVFL 125

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|297584227|ref|YP_003700007.1| exonuclease RNase T and DNA polymerase III [Bacillus
           selenitireducens MLS10]
 gi|297142684|gb|ADH99441.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           selenitireducens MLS10]
          Length = 233

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 90/165 (54%), Gaps = 10/165 (6%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           VFD+ETTG    K DRI+ IG V++ +   T+ TF  F+  + +  S     L GI +E 
Sbjct: 53  VFDLETTGFFPQKQDRILSIGGVKIKNNEITDDTFYSFVYYD-QPISETIRHLTGIQEED 111

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P+ + + + F+ F   ++  +IAH+A  + GF+   L R  +      R+IDT+ +
Sbjct: 112 VLNAPAEADVLTRFFAF--AEDDLFIAHHAAHEKGFMQDALWRSFRATFQ-RRLIDTIFL 168

Query: 130 ARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            + + P  R+  +L + C+ + I  + R  H AL D+ L ++++I
Sbjct: 169 TKLQ-PDLRDTAELEACCRYFNIEPAGR--HHALHDAKLAAELWI 210


>gi|304387160|ref|ZP_07369404.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC
           13091]
 gi|304338764|gb|EFM04874.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC
           13091]
 gi|325201850|gb|ADY97304.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M01-240149]
          Length = 470

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   V D+E+TG +   DR+ E+  V+     +  R  +     N +K  P+ +  L GI
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    +AHN++FD  F+  E  R+      P+  + 
Sbjct: 84  SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA--LC 139

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|229162442|ref|ZP_04290403.1| DNA polymerase III alpha subunit [Bacillus cereus R309803]
 gi|228620921|gb|EEK77786.1| DNA polymerase III alpha subunit [Bacillus cereus R309803]
          Length = 315

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIIDTLS 128
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +    L+P +++IDT+ 
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL--LEPKNKVIDTVF 124

Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|311114663|ref|YP_003985884.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019]
 gi|310946157|gb|ADP38861.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019]
          Length = 307

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 21/166 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA----LKLHGIT 66
           V D ETTGL +  D IIEIG + + +    +R  Q+       K S E       L GIT
Sbjct: 24  VLDTETTGLSAYYDEIIEIGILRVRNNEIVDRYDQLI------KPSIEVDGFITALTGIT 77

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ L+D PS SS+ ++   F +E     + HN  FD+ F+N       K+ L  ++ +DT
Sbjct: 78  NDMLEDMPSISSVKNDVLSFISEDII--LGHNTSFDMRFLNEGF----KEQL-SNQYMDT 130

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +  AR+ +P  ++  L+ L    G+   H ++H AL D     ++Y
Sbjct: 131 MQFARKLYPELKHHRLSDLTDYLGL---HNNEHRALADCIATKELY 173


>gi|72160587|ref|YP_288244.1| DNA polymerase III subunit epsilon [Thermobifida fusca YX]
 gi|71914319|gb|AAZ54221.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX]
          Length = 250

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 12/150 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF-L 70
           FDIETTG++ + DR++    +E      + RT + +L   G +  PEA+ +HGI+ E  +
Sbjct: 19  FDIETTGINLEQDRVVTAAIIE-TAADGSQRTRRTWLVNPGVEIPPEAVAIHGISTELAV 77

Query: 71  KDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDP-----SR 122
            D        +E  D      +     +  NA FD+  ++ E +R    PL       + 
Sbjct: 78  ADGIPAPVAVAEITDLLEQVLQSGTPLVIMNAPFDLTILDRECRRYGVVPLSERLDTVAP 137

Query: 123 IIDTLSIARR--KHPSSRNDLNSLCKRYGI 150
           +ID L + R   ++   +  L +LC  YG+
Sbjct: 138 VIDPLILDRHIDRYRRGKRTLEALCAHYGV 167


>gi|326562712|gb|EGE13014.1| ribonuclease T [Moraxella catarrhalis 103P14B1]
 gi|326568721|gb|EGE18791.1| ribonuclease T [Moraxella catarrhalis BC8]
 gi|326574186|gb|EGE24134.1| ribonuclease T [Moraxella catarrhalis 101P30B1]
 gi|326575625|gb|EGE25549.1| ribonuclease T [Moraxella catarrhalis O35E]
          Length = 232

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 20/184 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++  D ++EI  V +L  +  N          + P +G    P ALK  G
Sbjct: 22  VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81

Query: 65  ITDE--FLK-----DKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN 114
           I  +  F K     +K +   IF        E +      + HNA FD+GF+NA + R N
Sbjct: 82  INPDSPFRKAISEDEKTALRRIFKALKALKKEHSCRQCILVGHNAHFDLGFLNAAIARTN 141

Query: 115 K---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                P     ++DT+S A   +      L   C   G+   ++  H AL D+   ++++
Sbjct: 142 SKNHSPFHTFSVLDTVSFAALTY--GHTVLAKTCMIAGLEFDNQHAHSALYDAQKTAELF 199

Query: 172 IKMM 175
             ++
Sbjct: 200 CHIV 203


>gi|228934882|ref|ZP_04097713.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824782|gb|EEM70583.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 315

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVFL 125

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|308069470|ref|YP_003871075.1| DnaQ family exonuclease/DinG family helicase, [Paenibacillus
           polymyxa E681]
 gi|305858749|gb|ADM70537.1| DnaQ family exonuclease/DinG family helicase, putative
           [Paenibacillus polymyxa E681]
          Length = 955

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGI 65
           M+  V D ETTG  S +D II++G + ++D+  + +R +  ++ P GR   P    L GI
Sbjct: 1   MKFAVLDFETTGTQSADD-IIQVG-LAIIDHDNSISRVYGSYVNP-GRSIPPFITGLTGI 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+ +KD P+   +  E     ++     + HN  FD  F+   L R    P    RI+D
Sbjct: 58  TDDDVKDAPALEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFS-GRILD 114

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+   +   PS S   L  +   +   ++H   H A  D+   ++V++K +
Sbjct: 115 TMDFLKIMFPSLSSYQLGFVSSEF--ELAHDRPHQADSDALATAEVFLKCL 163


>gi|269968066|ref|ZP_06182103.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827312|gb|EEZ81609.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 238

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 70/159 (44%), Gaps = 6/159 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D+ETTGLDS+ + I+ +G VE+        T Q     +  K  PE + ++ IT + 
Sbjct: 52  IVLDLETTGLDSEEEVILSMGWVEIRQGHIDLATSQHLYVHSDSKIKPETIVVNHITQQM 111

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D  S       F  F   +N   +AH    +  FIN  LQR+      P   IDTL I
Sbjct: 112 LTDGISIHEAMRTF--FKAAENKVIVAHGCIVETSFINQYLQRVFNIKELPLIWIDTLRI 169

Query: 130 ARRKH----PSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            +R       S  +D+     R    +   + H AL D+
Sbjct: 170 EKRLQRAINASDESDVTLAATRERYGLPAYNGHNALADA 208


>gi|294498159|ref|YP_003561859.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium
           QM B1551]
 gi|294348096|gb|ADE68425.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           megaterium QM B1551]
          Length = 933

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D+ETTG   K  D++I+  AV +++  K    F  FL P G    P   +L  I 
Sbjct: 4   RFVVVDLETTGHSPKQGDKMIQFAAV-IVEDGKIVERFSSFLNP-GMDIPPFITQLTNIQ 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ +KD P F  I  +  +  +  +A ++AHN  FD+ F+  EL +  ++ L  S  +DT
Sbjct: 62  NDMVKDAPLFEEISPKIIELLD--DAYFVAHNVAFDLTFLQEELYQCGEETLYNST-VDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +AR   P+      S    Y + I H + H A  D+ + + +
Sbjct: 119 VELARILLPTVDGYKLSQLAEY-LHIEHENPHQADSDAEVTARI 161


>gi|229197718|ref|ZP_04324438.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
 gi|228585795|gb|EEK43893.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
          Length = 315

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|49478968|ref|YP_037688.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|301055098|ref|YP_003793309.1| DNA polymerase III subunit epsilon [Bacillus anthracis CI]
 gi|49330524|gb|AAT61170.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|300377267|gb|ADK06171.1| DNA polymerase III subunit epsilon [Bacillus cereus biovar
           anthracis str. CI]
          Length = 315

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVFL 125

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|312870744|ref|ZP_07730851.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           3008A-a]
 gi|312873738|ref|ZP_07733783.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           2052A-d]
 gi|329919615|ref|ZP_08276604.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners SPIN
           1401G]
 gi|311090736|gb|EFQ49135.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           2052A-d]
 gi|311093756|gb|EFQ52093.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           3008A-a]
 gi|328937420|gb|EGG33842.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners SPIN
           1401G]
          Length = 299

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 14/161 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALK-LHGITD 67
           ++ D+ETTGLD  N+ IIEIGA+      K  +  + + C   +  + P A+K L GI+D
Sbjct: 132 VIIDLETTGLDYINNNIIEIGAI------KIAKNIEEYSCIVKQNITLPNAIKILTGISD 185

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             LK     S    E   F  ++    + +N  FD+ FIN  L+R  +  L  +++ D +
Sbjct: 186 AELKTGKDESVAIKELCTFIGDK--ALVGYNVNFDIRFINEALKRNGQSQL-TNKVYDVM 242

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLL 167
              +R     +N  L+++   YGI I  +  H A+ D  ++
Sbjct: 243 KYVKRDKMFLKNYKLDTVLSEYGINI--KVPHRAIEDVKII 281


>gi|302554973|ref|ZP_07307315.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
 gi|302472591|gb|EFL35684.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
          Length = 238

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 23/160 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68
           I FD+ETTG D +  RI+    +E+     + R  + +L   G     +A+ +HGI+ E 
Sbjct: 9   IGFDLETTGTDPREARIVTGAVIEVRGGEPSGR--REWLADPGVPIPEDAVAVHGISTER 66

Query: 69  -FLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118
              + +P      + + + + +W    +     +A+NA FD+  ++AEL+R     L   
Sbjct: 67  AAAEGRPADQVADAMAEVLTSYW----KTGVPVVAYNAAFDLTLLSAELRRHGLPSLRDR 122

Query: 119 ----DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
               DP+ +ID  +I R   ++   + +L ++C  YG+ +
Sbjct: 123 LGGVDPAPVIDPYTIDRWVDRYRRGKRNLEAVCAEYGVVL 162


>gi|62185003|ref|YP_219788.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3]
 gi|62148070|emb|CAH63824.1| DNA polymerase III, epsilon chain [Chlamydophila abortus S26/3]
          Length = 228

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG     DRIIEI A   +    T  +F  ++ P       EA K+HGIT   
Sbjct: 5   IFYDTETTGTQIDKDRIIEIAAYNHI----TKESFVTYVNPEIPIPE-EASKIHGITTST 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +   P F   +  F +F    +A  +AHN   FD   +  E +R   +PL   + ID+L 
Sbjct: 60  VISAPKFPEAYKHFCEFCG-NDAVLVAHNNDSFDFPLMEKECRRHALEPLS-LKTIDSLK 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            A++  P   +++L  L + YG   +    H AL D   L +V+  ++
Sbjct: 118 WAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLHNVFSALI 163


>gi|291537711|emb|CBL10823.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis M50/1]
          Length = 226

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 15/180 (8%)

Query: 3   RKNKMRK------IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           RK K R+      +++D+ETTG+ S  D +IEI AV++ +  K    F   + P GR   
Sbjct: 5   RKGKQRREYVPDYVLYDLETTGISSLYDEVIEISAVKVRN-GKIVDEFSELVNP-GRPIP 62

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINK 115
             A  ++ I+D+ +++  SF  +  EF  F  +       HN A FD+ F+  + ++   
Sbjct: 63  YAASSVNNISDKMVENARSFEKVLPEFLAFAGDD--VLAGHNIAGFDMKFLYRDCEKYFG 120

Query: 116 DPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             L  +  IDTL+IA+   P  ++  L+ L + YG  IS +  H AL D  +   V+  M
Sbjct: 121 QTLT-NDYIDTLAIAKLCFPEWKHRRLSDLAEHYG--ISTKGAHRALADCRMNQQVFELM 177


>gi|161870321|ref|YP_001599491.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442]
 gi|161595874|gb|ABX73534.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442]
          Length = 461

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   V D+E+TG +   DR+ E+  V+     +  R  +     N +K  P+ +  L GI
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 74

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    +AHN++FD  F+  E  R+      P+  + 
Sbjct: 75  SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA--LC 130

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 131 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173


>gi|288921215|ref|ZP_06415500.1| stress protein [Frankia sp. EUN1f]
 gi|288347369|gb|EFC81661.1| stress protein [Frankia sp. EUN1f]
          Length = 622

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 9/163 (5%)

Query: 14  IETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDK 73
           +ET+GL +  DRI+ I  V++         +   L P      P  + +HG+T E L   
Sbjct: 1   METSGLAADRDRILSIAVVQVGADGAVGERWTTLLDPG---CDPGPVHIHGLTRELLAGS 57

Query: 74  PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR- 132
           P+F+ +  E       +    +AHNA FD  F+ AE  R  ++ L   R + +  +ARR 
Sbjct: 58  PTFADVVDELASRLAGR--VMVAHNASFDWRFLTAEAVRAGRE-LPTERRMCSCVLARRL 114

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             P     L ++   + +      +H AL D+ ++++V  +M+
Sbjct: 115 DLPVPDFRLATIADFWAVPFER--QHDALADAMVVAEVLPRML 155


>gi|293363994|ref|ZP_06610730.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           alligatoris A21JP2]
 gi|292552484|gb|EFF41258.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           alligatoris A21JP2]
          Length = 1432

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 15/180 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FDIETTGL  +   IIE GA  + + S   R  + F     +  S     L GITD+ 
Sbjct: 402 ISFDIETTGLSPRYHEIIEFGASIIKNGSIVAR--EQFFIKASKPLSSFTTNLTGITDKM 459

Query: 70  LKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           L++     K +   I   F      +N   +AHNA+FD+ F+  +L   N   +     +
Sbjct: 460 LQEEGIELKTALERILKLF------ENKIALAHNAQFDMNFVFQKLLD-NCYAIPSISFV 512

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           DTL I+R   P+ S++ L       GI  S    H A  D+ +L+  +I  +   +Q+N 
Sbjct: 513 DTLMISRIIFPNKSKHRLGDYTSNLGINYSVDDAHRADYDAEILAQAWIASISHLAQLNL 572


>gi|254805232|ref|YP_003083453.1| putative DNA polymerase III subunit [Neisseria meningitidis
           alpha14]
 gi|254668774|emb|CBA06684.1| putative DNA polymerase III subunit [Neisseria meningitidis
           alpha14]
          Length = 461

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   V D+E+TG +   DR+ E+  V+     +  R  +     N +K  P+ +  L GI
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 74

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    +AHN++FD  F+  E  R+      P+  + 
Sbjct: 75  SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA--LC 130

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 131 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173


>gi|296113547|ref|YP_003627485.1| ribonuclease T [Moraxella catarrhalis RH4]
 gi|295921241|gb|ADG61592.1| ribonuclease T [Moraxella catarrhalis RH4]
 gi|326559550|gb|EGE09964.1| ribonuclease T [Moraxella catarrhalis 7169]
 gi|326564652|gb|EGE14870.1| ribonuclease T [Moraxella catarrhalis 46P47B1]
 gi|326567767|gb|EGE17873.1| ribonuclease T [Moraxella catarrhalis BC1]
          Length = 232

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 87/211 (41%), Gaps = 24/211 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++  D ++EI  V +L  +  N          + P +G    P ALK  G
Sbjct: 22  VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81

Query: 65  ITDE--FLK-----DKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN 114
           I  +  F K     +K +   IF        E        + HNA FD+GF+NA + R N
Sbjct: 82  INPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLNAAIARTN 141

Query: 115 K---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                P     ++DT+S A   +      L   C   G+   ++  H AL D+   ++++
Sbjct: 142 SKNHSPFHTFSVLDTVSFAALTY--GHTVLAKTCMIAGLEFDNQHAHSALYDAQKTAELF 199

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPN 202
             ++      N    TN     + +  T P+
Sbjct: 200 CHIV----NQNTLLSTNHANLTQNDTPTSPH 226


>gi|256784395|ref|ZP_05522826.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289768274|ref|ZP_06527652.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289698473|gb|EFD65902.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
          Length = 244

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 25/159 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD+ETTG D +  RI+    +E++      R  + +L   G +   +A+ +HGI++E 
Sbjct: 9   IGFDLETTGTDPREARIVTGAVIEVMGSEPLGR--REWLADPGVEIPADAVAVHGISNER 66

Query: 70  L--KDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---- 117
              + +P      + +++  + W    +     +A+NA FD+  + AEL+R +  P    
Sbjct: 67  AAREGRPADQVADAIATVLVDHW----KAGVPVVAYNAAFDLTLLAAELRR-HALPSLRE 121

Query: 118 ----LDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGI 150
               LDP+ +ID  +I R   ++   + +L ++C+ YG+
Sbjct: 122 RLGGLDPAPVIDPYTIDRSVDRYRRGKRNLEAVCREYGV 160


>gi|163941216|ref|YP_001646100.1| DNA polymerase III subunit epsilon [Bacillus weihenstephanensis
           KBAB4]
 gi|163863413|gb|ABY44472.1| DNA polymerase III, epsilon subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 315

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P   ++ P+ +  L GIT+ 
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNP--ERSIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F + +    +AHNA FD+ F+ + +  +   P   + +IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTK--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 124

Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|326565468|gb|EGE15639.1| ribonuclease T [Moraxella catarrhalis 12P80B1]
 gi|326572590|gb|EGE22579.1| ribonuclease T [Moraxella catarrhalis CO72]
          Length = 232

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 20/184 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++  D ++EI  V +L  +  N          + P +G    P ALK  G
Sbjct: 22  VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81

Query: 65  ITDE--FLK-----DKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN 114
           I  +  F K     +K +   IF        E        + HNA FD+GF+NA + R N
Sbjct: 82  INPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLNAAIARTN 141

Query: 115 K---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                P     ++DT+S A   +      L   C   G+   ++  H AL D+   ++++
Sbjct: 142 SKNHSPFHTFSVLDTVSFAALTY--GHTVLAKTCMIAGLEFDNQHAHSALYDAQKTAELF 199

Query: 172 IKMM 175
             ++
Sbjct: 200 CHIV 203


>gi|229109097|ref|ZP_04238697.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-15]
 gi|228674375|gb|EEL29619.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-15]
          Length = 934

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL+++    +   + ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQVGYTEIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|228909419|ref|ZP_04073244.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
 gi|228850196|gb|EEM95025.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
          Length = 318

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 14  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 129 AKKYMKH-APNHKLETLKRILGIRL---SSHNAFDDCITCAAVYQK 170


>gi|15896683|ref|NP_350032.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
           824]
 gi|15026532|gb|AAK81372.1|AE007841_7 DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
           824]
 gi|325510847|gb|ADZ22483.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum EA
           2018]
          Length = 1452

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 13/151 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   K ++I EIG ++  +  K    F +F+ P  +      +++  ITD+ +
Sbjct: 430 VLDLETTGFSPKTEKITEIGIMK-YENGKVIDKFSLFVNPE-KPIPARVVEVTNITDDMV 487

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTLS 128
           K+  +   +F +  +F   + +  +AHNA FD+GF+  NA++     D       +DTLS
Sbjct: 488 KNAETIDKVFPKMLEFI--KGSVLVAHNASFDIGFLKHNAKVLGYEFD----FTYLDTLS 541

Query: 129 IARRKHPSSRN-DLNSLCKRYGI--TISHRS 156
           +A+   P  ++  L  + K  GI   ++HR+
Sbjct: 542 LAQAVFPQYKSYKLGRIAKNLGIKVEVAHRA 572


>gi|209695329|ref|YP_002263258.1| ribonuclease T [Aliivibrio salmonicida LFI1238]
 gi|208009281|emb|CAQ79547.1| ribonuclease T [Aliivibrio salmonicida LFI1238]
          Length = 221

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +SK D ++EI AV L      Y K   T    + P  G     EAL   G
Sbjct: 20  VVIDVETAGFNSKTDALLEICAVTLAMDDEGYLKPATTIHFHVTPFEGANLEQEALDFIG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFI--NAELQRI 113
           I D F  L+   +      E +    ++        A  +AHNA FD  F+   AE  ++
Sbjct: 80  IRDPFSPLRGAVTEDVALKEIFKLIRKEQKQHDCRRAIMVAHNANFDHSFVMEAAERTKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +I+       +  L   CK  G+    +  H AL D+   ++++  
Sbjct: 140 KRIPFHPFCTFDTAAISGLA--LGQTVLAKACKTAGMDFDGKEAHSALYDTEKTAELFCH 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|127512449|ref|YP_001093646.1| ribonuclease T [Shewanella loihica PV-4]
 gi|126637744|gb|ABO23387.1| RNAse T [Shewanella loihica PV-4]
          Length = 257

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-----NRTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G +++ D ++EI AV LL          ++T    + P  G    PEAL  +
Sbjct: 40  VVIDVETAGFNAQTDALLEI-AVTLLKMDDNGDLVLDKTLHYHIEPFEGANLEPEALAFN 98

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113
           GI         + +K +F  IF E        N      +AHNA FD GF+   ++R  +
Sbjct: 99  GIDPSNPLRGAVSEKEAFLEIFKEVKKHQKASNCHRSIIVAHNAAFDHGFVTQAIERNAL 158

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++          L   C+  GI   ++  H AL D+   ++++  
Sbjct: 159 KRTPFHPFATFDTAALSGLA--LGHTVLAKACEIAGIPFDNKEAHSALYDTERTAELFCH 216

Query: 174 MM 175
           ++
Sbjct: 217 IV 218


>gi|331701432|ref|YP_004398391.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128775|gb|AEB73328.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           buchneri NRRL B-30929]
          Length = 945

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 9/152 (5%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V DIETTG D S ++R I+     L+  +K  +TF   + P  R+     ++L GIT+E 
Sbjct: 9   VVDIETTGTDISADNRTIQFSCC-LVSNNKIIKTFVTDINPQ-REVPNRIVQLTGITNER 66

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   +F  + ++ +   N  N  ++AHN  FD  F+N+E QR+    L     IDT+++
Sbjct: 67  LQKAKTFDQVAAQLYSLLN--NTVFVAHNVNFDFPFLNSEFQRVGYPELQ-IEAIDTVTL 123

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           ++   P+ S   L  L   +   I H   H A
Sbjct: 124 SQILLPTLSSYRLQDLSSYFN--IEHDHPHTA 153


>gi|302533719|ref|ZP_07286061.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
 gi|302442614|gb|EFL14430.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
          Length = 332

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 10/162 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRI+   AV  LD ++ N     +   N R++ P    +HG+T   L
Sbjct: 29  VVDVETTGL-ARDDRIVS-AAVYRLD-AQGNVEDHWYTLVNPRRD-PGPTWIHGLTSAML 84

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D P F+ I  EF     ++    +AHNA FD   I  E  R +       R+  T++++
Sbjct: 85  QDAPLFADIAEEFAGRLADRVL--VAHNAIFDWQMIAREYARASATAPVRQRLC-TIALS 141

Query: 131 RRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +  + P   + L SL   YG+ +  R+ H AL D+ +L++ +
Sbjct: 142 KELNLPLPNHKLESLAAHYGV-VQQRAHH-ALDDARVLAEAF 181


>gi|71414299|ref|XP_809256.1| exonuclease [Trypanosoma cruzi strain CL Brener]
 gi|70873611|gb|EAN87405.1| exonuclease, putative [Trypanosoma cruzi]
          Length = 316

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 90/218 (41%), Gaps = 53/218 (24%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVE-------LLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M  I  D+ETTG  ++ D I+ IGAVE       L  +    R+F   + P+ + +S +A
Sbjct: 94  MSAICVDLETTGFSAQRDDIVSIGAVELRWDGTTLQQWVLGARSFFRTVRPS-KPSSHQA 152

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFF------------NEQN---------------- 91
             +HG++ E L+D P    + S+F  F              E+N                
Sbjct: 153 EAVHGLSFEMLRDAPLLEDVISDFAAFLIQLDGNLPQSGQTEENHRAKPGDLSAKKRCTA 212

Query: 92  ----------AEWIAHNAKFDVGFINAELQ----RINKDPLDPSRIIDTLSIARRKHPSS 137
                        IAHNA FD  F+   +     R+  D   P  +  T S+ R  +   
Sbjct: 213 ATTAGCVLTLPPVIAHNANFDASFLQRAVSGAGWRVVWDEYAP--LTCTQSMFRALYSHQ 270

Query: 138 RNDLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKM 174
             DL+  C+  G+  S R  +H AL D+ L   +++++
Sbjct: 271 AADLSRACQFCGVDTSGRDERHDALHDAQLCGRLFLRL 308


>gi|330723726|gb|AEC46096.1| DNA polymerase III PolC [Mycoplasma hyorhinis MCLD]
          Length = 1457

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 9/172 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGIT 66
           R +VFD+ETTGL  K + +IE GAV +    +T    +  + P  ++  P  +  L GIT
Sbjct: 403 RYVVFDLETTGLSPKFNELIEFGAV-VWQNGQTLEKHEFLIKP--KEKIPSYISDLTGIT 459

Query: 67  DEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++ ++++  S      +    F  QN+  +AHNA+FD G +    + +    L+   +ID
Sbjct: 460 NQMIENEAISVEEAAIKIKQIF--QNSILVAHNARFDYGCLVEFFKELELYELEQP-VID 516

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           TL ++R   P+  R++L  L K   I       H    D+ +L+ V+ + ++
Sbjct: 517 TLEVSRFLAPTQKRHNLKELAKNASIHYDETESHRGGYDAEVLAKVWDQFLI 568


>gi|237785812|ref|YP_002906517.1| putative DNA polymerase III subunit epsilon [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758724|gb|ACR17974.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 256

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 11/172 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEALKLHGITD 67
           +  D+ETTGLD+  DR++ +G V +   +    T   +L     G  +  ++  +HGITD
Sbjct: 65  LAVDVETTGLDADRDRLLSVGMVAINGRAIPLATADHWLVRYHEGDVSVGQSATIHGITD 124

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNA-EWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             L++  S   I +   D  N       +AH A  +  FI+   +R    P  P  ++DT
Sbjct: 125 SQLENGRSLLDILT---DVVNAAAGRALLAHLALIEHDFISTACERAVGVPWSPLCVVDT 181

Query: 127 LSIARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + + RR   S      R ++  +  RY   +     H AL+D+   +++Y+ 
Sbjct: 182 MDLERRSAVSFGRRPGRGEVRLMNARYSRGLPSYHNHNALVDALACAELYLA 233


>gi|163791070|ref|ZP_02185490.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Carnobacterium sp. AT7]
 gi|159873626|gb|EDP67710.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Carnobacterium sp. AT7]
          Length = 939

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 89/167 (53%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V DIETTG + +  DR+I+ G V LL+  +    F   + P    + P+ ++ L G++++
Sbjct: 9   VVDIETTGGNVASGDRMIQFGCV-LLEGDQVVHRFATNINP--LTSIPKQIEHLTGLSNK 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F  I +  ++  +      IAHN +FD  F++AELQR     L  ++ IDT+ 
Sbjct: 66  TVAQAPYFEDIAATIYNLLD--GCIIIAHNIQFDYTFLSAELQRCGMPALQ-NKGIDTVE 122

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +A+   P+ S   LN L  ++   I H + H A  D+ + +++++ +
Sbjct: 123 LAQVLLPTESSYRLNDLVSKFN--IEHTNPHQADSDAAVTAELFLVL 167


>gi|119946100|ref|YP_943780.1| ribonuclease T [Psychromonas ingrahamii 37]
 gi|119864704|gb|ABM04181.1| RNAse T [Psychromonas ingrahamii 37]
          Length = 207

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 23/184 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-ELLD-----YSKTNRTFQVFLCPNGRKNSPEALKLH 63
           ++ DIET+GL+++ D I+EI A+   +D     ++     F V L   G    P+AL   
Sbjct: 15  VIIDIETSGLNAQTDAILEIAAILPAMDSQGYLFAAEKIHFNV-LPFEGANLDPKALAFT 73

Query: 64  GITDEF------LKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRI 113
           GI D F      + ++ + + IF +      +QN    +  +AHNA FD GFIN   +R 
Sbjct: 74  GI-DPFNPLRAAVDERDALTEIF-KLVRKHQKQNLCNRSIIVAHNATFDQGFINKATERC 131

Query: 114 N--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           N  + P  P    DT S+A       +  L   C++  I   ++  H AL D+ + +D++
Sbjct: 132 NLKRMPFHPFVSFDTASMAGLI--LGQTVLAKACQQASIPYDNKQAHSALYDTEVTADLF 189

Query: 172 IKMM 175
             M+
Sbjct: 190 FYMV 193


>gi|327439003|dbj|BAK15368.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046]
          Length = 251

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 12/146 (8%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKLHGITD 67
           +V DIETTG  + + D+I+EI A+++  + +T   F  F+ P    KNS     +HGIT+
Sbjct: 88  VVVDIETTGGSAARGDKIVEIAALKI-RHGETVDLFHRFVNPEKPIKNS----HIHGITN 142

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRIIDT 126
           E +KD+ + S +   F  F  +     ++H+  FD   F+  E  R    P +P+    T
Sbjct: 143 ERVKDEQTISPVIHAFKAFLGD--LPIVSHHIGFDWYSFLALEFFRNGIRPTNPAAC--T 198

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITI 152
           + +AR+   S RN+LN + + Y I +
Sbjct: 199 VLLARKYLDSPRNNLNVIAETYNIPL 224


>gi|268679559|ref|YP_003303990.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617590|gb|ACZ11955.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 246

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 26/171 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I+FD ETTG +++ DRII+IGA+ ++D       F   LC        EA+ +HGIT 
Sbjct: 3   KYILFDTETTG-NNEEDRIIQIGAM-IVDAKGQVEVFDE-LCSTVLPIKVEAMAVHGITP 59

Query: 68  EFLKDKPSFSSI-FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125
             ++ K  F+   F +     N Q    IAHN  FD+G        + K+   P  +IID
Sbjct: 60  NLIEGKGLFTDTNFYKTLLSLNNQENYLIAHNMPFDMGM-------LQKEGFIPDLKIID 112

Query: 126 TLSIARRKHPSS--------RNDL------NSLCKRYGITISHRSKHGALL 162
           TL +A+   P+S        R DL       +   +Y ITI      G +L
Sbjct: 113 TLRVAKHLIPNSPSKALQYLRYDLELYKNEQAEADKYNITIKAHDAIGDVL 163


>gi|332362812|gb|EGJ40606.1| DNA polymerase III [Streptococcus sanguinis SK355]
          Length = 814

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+   +  E +K
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56

Query: 62  -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P
Sbjct: 57  ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +LC    + IS  + H AL D+   + +++K+
Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165


>gi|331002519|ref|ZP_08326037.1| hypothetical protein HMPREF0491_00899 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410335|gb|EGG89769.1| hypothetical protein HMPREF0491_00899 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 235

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 9/175 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D+ET+G+  ++D+IIE+G +++ D S    TF   + P    N  E L+L GI    
Sbjct: 7   IAIDLETSGIKLRSDKIIEVGLLKIKD-SHITDTFSCLINPEIEINE-EILRLTGIKKRE 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L +  S + +     +F   ++ + + HN  FD  FI  E  R     +   + +DT  +
Sbjct: 65  LYNAESINEVIGHIVEFC--EDYDLLGHNTVFDYSFIKREASRAG--LVFDKKGLDTYKL 120

Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            ++  P+  + +L   C+ +G  I  ++ H A  D++    ++ K+M      NF
Sbjct: 121 CKKILPADIKKNLTDACRYFG--IERKNPHRAFSDAYYTHLLFQKIMENFPDFNF 173


>gi|303326602|ref|ZP_07357044.1| exonuclease [Desulfovibrio sp. 3_1_syn3]
 gi|302862590|gb|EFL85522.1| exonuclease [Desulfovibrio sp. 3_1_syn3]
          Length = 175

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 10/165 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET+G  + +   + +  +E  D   T+  +++   P+ R    E   +HG+T   
Sbjct: 9   VAIDFETSGYAAHSACAVGLARIE--DGRVTDCFYRLLRPPSARVLFTE---IHGLTWPM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+D PSF+  + E        +   +AHNA FD   + A   R    P   +  + TL  
Sbjct: 64  LRDAPSFAQAWPEAGAILCGAH-FLLAHNASFDRRVLLA-CCRAAGLPAPEAPFLCTLKG 121

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +RR  P     LN +C+ +GI + H   H A  D+   ++VY+++
Sbjct: 122 SRRSLPLPSKKLNLVCEYFGIALKH---HNAASDAQACAEVYLRL 163


>gi|282881940|ref|ZP_06290585.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
 gi|281298215|gb|EFA90666.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
          Length = 298

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 36/220 (16%)

Query: 1   MIRKNKMRKI-----VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  KN  ++I     V D ETTGL S  D IIEIG +++ D    +R  Q+ + P+   +
Sbjct: 1   MANKNYTKQIINDYCVLDTETTGLSSYYDEIIEIGILKVRDNKIVDRYSQL-IKPDYEID 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           S     L GIT+E +K+ P+ + + S+   F  +     I HN  FD+ F+NA       
Sbjct: 60  SF-ITSLTGITNEMVKEMPAINFVMSDVLSFIGKD--VIIGHNTSFDIRFLNAGFNI--- 113

Query: 116 DPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITIS-HRSKHGALLDSHL------- 166
             LD ++ +DT+  AR+  P  ++  L+ L    G++ + HRS    +    L       
Sbjct: 114 -ELD-NKYMDTMQFARKLFPELKHHRLSDLTSYLGLSNNEHRSIADCIATKELYDSIKDT 171

Query: 167 -------LSDVYIKMMVGGSQINFG------FKTNEDRFF 193
                  + D+++K   GG  I+         + +ED FF
Sbjct: 172 MTKRGLGIQDLWVKSNHGGKGIDIKSIHPTEVEIDEDNFF 211


>gi|157151695|ref|YP_001450717.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157076489|gb|ABV11172.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 824

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 21/180 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M RKN M+  + D+E TG  S   +II++G V +L+  +   T+Q  + P+      EAL
Sbjct: 1   MKRKN-MKYAIVDLEATGTGS-TAKIIQVGIV-ILEDGEIKETYQTDINPH------EAL 51

Query: 61  KLH-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           + H     G++D+ L   P FS +  E ++    ++A ++AHN KFD   +   L     
Sbjct: 52  EEHIKQLTGLSDQRLSQAPDFSQVAREIYELI--EDAVFVAHNVKFDANLLAESLFWEGF 109

Query: 116 DPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           D L P   +DT+ +A+   P+  +  L+SLC+   I +     H A+ D+   + +++K+
Sbjct: 110 DLLSPR--VDTVELAQVVFPTYEKYGLSSLCELLEIPLEQ--AHTAISDAMATALLFLKI 165


>gi|78355675|ref|YP_387124.1| DNA polymerase III subunit epsilon [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218080|gb|ABB37429.1| DNA polymerase III, epsilon subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 239

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 21/184 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+E TGLD ++D I+ IGAV +   S  T   F  ++ P      P  L +H IT   
Sbjct: 43  VTDMEMTGLDPEHDEIVAIGAVRIRGLSIITGDVFHTYVRPQRSMARPATL-IHRITPAQ 101

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128
           L+  P+ + +   F D+  +  A    H+   D+GF+    +R +   P  P   +DT+ 
Sbjct: 102 LQHSPALAGLLPGFVDWCGQ--ALITGHHVGLDMGFLTRACRRHLGGAPATPC--VDTMR 157

Query: 129 IARRK------------HPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKM 174
           +A+               P+    L  L  RYG+    +H +   AL  ++L   +  K+
Sbjct: 158 LAQAWERERWERSFDPFQPTVSYTLADLSARYGLPQFRAHDALEDALQTAYLFLYLVRKL 217

Query: 175 MVGG 178
             GG
Sbjct: 218 KGGG 221


>gi|315182194|gb|ADT89107.1| DNA polymerase III, alpha subunit [Vibrio furnissii NCTC 11218]
          Length = 184

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 8/154 (5%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSE 82
            DR IEIGAV+L+D  +   TFQ  + P G + S       GIT+  L+  P    + +E
Sbjct: 2   GDRAIEIGAVKLVD-GQVAGTFQQLMNP-GFRVSGFIEGYTGITNTMLRTAPRCEEVMAE 59

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK-HPSSRNDL 141
           F  F  +     +AHNA FD  F++AE  RI      P +   ++ IARR    +  + L
Sbjct: 60  FAHFIGD--TPLVAHNASFDKRFLDAEFDRIGVRY--PGQFACSMLIARRLIQNAPTHKL 115

Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             L  R+    +  + H AL DS + + +++ M+
Sbjct: 116 GDLV-RFKQIENDGTFHRALADSQMTASLWMLMV 148


>gi|56420711|ref|YP_148029.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus kaustophilus HTA426]
 gi|56380553|dbj|BAD76461.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426]
          Length = 909

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 15/173 (8%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---KLH 63
           R ++ D+ETTG    K DRII++G   + D     R F  F  P      P  L   +L 
Sbjct: 4   RFVIIDLETTGNGPKKGDRIIQLGMAVVEDGLIVER-FASFFNPE----QPIPLFIQQLT 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I +E ++  P F+    E     +   A ++AHN  FD+ F+ AEL+R    P      
Sbjct: 59  NINEEMVEGAPLFADKAGEIAALMH--GAYFVAHNVDFDLPFLQAELERAGWPPFS-GPT 115

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IDT+ +AR   P++ +  L  L ++ G  + H   H A  D+ + + ++I ++
Sbjct: 116 IDTVELARIVLPTAESYKLGDLARQLG--LHHNRPHQADSDAEVTAKLFIALL 166


>gi|78066765|ref|YP_369534.1| DNA-directed DNA polymerase [Burkholderia sp. 383]
 gi|77967510|gb|ABB08890.1| DNA-directed DNA polymerase [Burkholderia sp. 383]
          Length = 205

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL  +  DR  EI  + L D    +R FQ  +   GR+   + + L GIT+E 
Sbjct: 6   VLDFETTGLSPNMGDRATEIAVILLRDGQVVDR-FQSLM-NAGRRIPSDVVALTGITNEM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  S++  E   F  +     +AHNA FD  F  +EL  +            T+ +
Sbjct: 64  IAAAPPASNVMKEAAAFVGKHAV--VAHNAGFDKRFWQSELGILGMSA--EHAFACTMLV 119

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ARR +P +++  L+SL     +  S R+ H A++D+ +   ++ ++
Sbjct: 120 ARRIYPDAQSHRLSSLVDMLRLPKSGRA-HRAMVDAEMAGHLWCRL 164


>gi|255068237|ref|ZP_05320092.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sicca ATCC 29256]
 gi|255047507|gb|EET42971.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sicca ATCC 29256]
          Length = 449

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 12/162 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           +V D+E+TG +   DR+ EI  +   +  +     Q+    N  K  PE  ++L GIT+E
Sbjct: 1   MVVDLESTGGNLYQDRVTEIAFLRF-ENGRVEHYEQLI---NPGKPIPEFVVQLTGITNE 56

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+F  I  +       + +  +AHN++FD  F+  E  R   D   P+  + T+ 
Sbjct: 57  MVAQAPAFDQIAPDILPLL--RGSLIVAHNSRFDYTFLRHEFYRAGIDFAAPA--LCTVQ 112

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++RR +P   +++L+S+  R GI    R  H AL D   L+D
Sbjct: 113 LSRRLYPQFYKHNLDSIISRMGIQTDDR--HRALADVLALAD 152


>gi|256851162|ref|ZP_05556551.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN]
 gi|260660586|ref|ZP_05861501.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN]
 gi|282934628|ref|ZP_06339871.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 208-1]
 gi|297206027|ref|ZP_06923422.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16]
 gi|256616224|gb|EEU21412.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN]
 gi|260548308|gb|EEX24283.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN]
 gi|281301203|gb|EFA93504.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 208-1]
 gi|297149153|gb|EFH29451.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16]
          Length = 936

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 88/167 (52%), Gaps = 10/167 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69
           V D+ETTG     DRII+ G   ++   +  +T+   + P  + + P+A++ L GI    
Sbjct: 12  VVDLETTGTRRGQDRIIQFGCA-IIKNRQIIKTYSFLINP--KADIPQAVQNLTGIKPAD 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P F +  ++  D    Q+  ++AHN  FD+ F+NAEL   N  P   +R IDT+ +
Sbjct: 69  VVNQPVFKNFATQIEDIL--QDTVFVAHNINFDLPFLNAELAA-NGFPKLRNRAIDTVEL 125

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++   P+     L+ L   + + + H + H A  D++  + + +K++
Sbjct: 126 SKIAFPTLPSYRLSDLT--HSLNLKHTNPHQADSDAYATASLLLKIL 170


>gi|226355452|ref|YP_002785192.1| DNA polymerase III subunit [Deinococcus deserti VCD115]
 gi|226317442|gb|ACO45438.1| putative DNA-directed DNA polymerase (DNA polymerase III, subunit)
           [Deinococcus deserti VCD115]
          Length = 204

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 89/174 (51%), Gaps = 22/174 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +  D E+TG++  +D +I++G +  LD    +    +  ++ P  R    + + +HG++ 
Sbjct: 14  VALDFESTGMNPAHDEVIQVG-LAPLDAGAVDLGGAWAQWVRPT-RPFRADTVAIHGLSY 71

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L++ P+ S++  E       Q    +AH A  ++GF       + +  L P+  +DTL
Sbjct: 72  ELLQEAPAISTVRLELGARL--QGRVLVAHYAALELGF-------LKRWGLRPAATLDTL 122

Query: 128 SIA----RRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +A    R+   ++R D   L++L +R+G+ +    +H AL D+ + + V++ +
Sbjct: 123 MLALALDRQSTATARRDAYTLSALARRFGVEVY--GEHDALADALITAQVFLVL 174


>gi|89897057|ref|YP_520544.1| hypothetical protein DSY4311 [Desulfitobacterium hafniense Y51]
 gi|89336505|dbj|BAE86100.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1447

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 9/149 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG  +  ++I EIG +++    K    F  F+ P  +      +++  ITD+ +
Sbjct: 426 VLDLETTGFSAATEKITEIGIMKIQG-GKIIDQFGCFVNPE-KPIPARVVEVTNITDDMV 483

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D  +   +F +  +F   + +  +AHNA FD+GF+    + +  D  D +  +DTLS+A
Sbjct: 484 RDAETIDQVFPKILNFI--EGSVLVAHNADFDMGFLKHNAKVLGYD-FDYTY-LDTLSLA 539

Query: 131 RRKHPSSRN-DLNSLCKRYGI--TISHRS 156
           +   P  +   L  + K  GI   ++HR+
Sbjct: 540 KELFPDYKTYKLGRIAKNLGIKVEVAHRA 568


>gi|251793080|ref|YP_003007806.1| ribonuclease T [Aggregatibacter aphrophilus NJ8700]
 gi|247534473|gb|ACS97719.1| ribonuclease T [Aggregatibacter aphrophilus NJ8700]
          Length = 217

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 23/184 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--------ELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++ D+ET GL++K + ++E+ A+         L+   K +   Q F    G    PE++K
Sbjct: 23  VIIDVETAGLNAKTNALLELAAITVKMDDNGHLVPDQKCHFHIQPF---EGANIDPESIK 79

Query: 62  LHGI-TDEFLKDKPSFSSIFSEFWDFFN--EQNAEW-----IAHNAKFDVGFINAELQRI 113
            +GI  D  L+   S +   SE +      +++AE      +AHNA FD GFI A  QR 
Sbjct: 80  FNGIDIDNPLRGAISENIAISEMFKMVRRAQKDAECQRSIIVAHNAAFDQGFIMAAAQRT 139

Query: 114 N--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           N  ++P  P    DT +++       +  L   C+   I       H AL D+   ++++
Sbjct: 140 NAKRNPFHPFSTFDTATLSGFMF--GQTVLIKACQAAKIPFDGSQAHSALYDTERTAELF 197

Query: 172 IKMM 175
             M+
Sbjct: 198 CYMV 201


>gi|117928176|ref|YP_872727.1| hypothetical protein Acel_0968 [Acidothermus cellulolyticus 11B]
 gi|117648639|gb|ABK52741.1| DNA polymerase III, epsilon subunit [Acidothermus cellulolyticus
           11B]
          Length = 566

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 75/172 (43%), Gaps = 20/172 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG       I E+ AV++    +     Q  + P GR   P    L GITD  
Sbjct: 27  VVVDLETTGGAPGTGAITELAAVKVRG-GEVLGELQTLVNP-GRPIPPFITVLTGITDAM 84

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P   ++   F +F     +  +AHNA FDVGF+ A       D      ++DT  +
Sbjct: 85  VAPAPPIDAVLPTFLEFAT--GSVLVAHNAPFDVGFLRAACAAAGYD-WPEFEVLDTARL 141

Query: 130 ARR---KHPSSRNDLNSLCK--RYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ARR   +  +    L +L +  R   T +HR+          L+DVY  + V
Sbjct: 142 ARRVLTREEAPNCTLATLARVFRAKTTPNHRA----------LADVYATIDV 183


>gi|219667072|ref|YP_002457507.1| DNA polymerase III subunit alpha [Desulfitobacterium hafniense
           DCB-2]
 gi|219537332|gb|ACL19071.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense
           DCB-2]
          Length = 1447

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 9/149 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG  +  ++I EIG +++    K    F  F+ P  +      +++  ITD+ +
Sbjct: 426 VLDLETTGFSAATEKITEIGIMKIQG-GKIIDQFGCFVNPE-KPIPARVVEVTNITDDMV 483

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D  +   +F +  +F   + +  +AHNA FD+GF+    + +  D  D +  +DTLS+A
Sbjct: 484 RDAETIDQVFPKILNFI--EGSVLVAHNADFDMGFLKHNAKVLGYD-FDYTY-LDTLSLA 539

Query: 131 RRKHPSSRN-DLNSLCKRYGI--TISHRS 156
           +   P  +   L  + K  GI   ++HR+
Sbjct: 540 KELFPDYKTYKLGRIAKNLGIKVEVAHRA 568


>gi|302557603|ref|ZP_07309945.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302475221|gb|EFL38314.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 240

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 23/160 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68
           I FD+ETTG D +  RI+    +E+       R  + +L   G     +A+ +HGI+ E 
Sbjct: 9   IGFDLETTGTDPREARIVTGAVIEVRAGEPLGR--REWLADPGVPIPEDAVAVHGISGER 66

Query: 69  -FLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118
              + +P      + + + + +W    +     +A+NA FD+  ++AEL+R     L   
Sbjct: 67  AAAEGRPADQVADAIAGVLTAYW----QTGVPVVAYNAAFDLTLLSAELRRYGLPSLSDR 122

Query: 119 ----DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
               +P+ +ID  +I R   ++   + +L ++C  YG+ +
Sbjct: 123 LGGIEPAPVIDPYTIDRAVDRYRRGKRNLEAVCAEYGVVL 162


>gi|269214643|ref|ZP_05986966.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           lactamica ATCC 23970]
 gi|269209302|gb|EEZ75757.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           lactamica ATCC 23970]
          Length = 470

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           M   V D+E+TG +   DR+ E+  V+     +  R  +     N +K  P+   +L GI
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAELTGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    IAHN++FD  F+  E  R       P+  + 
Sbjct: 84  SDGMVADAPVFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|311030323|ref|ZP_07708413.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. m3-13]
          Length = 844

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 9/172 (5%)

Query: 6   KMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K R +V D+ETTG    KND+II++GAV + D     R F  F+ P      P   +L  
Sbjct: 2   KQRFVVLDLETTGNTPKKNDKIIQVGAVLIEDGEIVER-FASFVNPQCTI-PPFIEQLTN 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I  + +   P+F+ I     +    + +  +AHN  FD+ F+  EL + +  P       
Sbjct: 60  INQDMVGRAPTFAQIAPMLCEML--KGSSLVAHNVPFDLSFLQHEL-KTSGHPTFSGNTF 116

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+ +AR   P+ ++  L  L   Y   ++H + H A  D+   + +++K++
Sbjct: 117 DTVELARILLPTQKSYKLTDLSIFY--ELNHDNPHRADSDAEATAIIFLKLL 166


>gi|325854302|ref|ZP_08171501.1| exonuclease [Prevotella denticola CRIS 18C-A]
 gi|325484096|gb|EGC87030.1| exonuclease [Prevotella denticola CRIS 18C-A]
          Length = 284

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 9/141 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGLD  NDRII+I  +++L   K  R   +F+ P  +    E  +L GI+D+ 
Sbjct: 10  VVFDLETTGLDLVNDRIIQISFIKVLPDGKEERE-NIFINPE-KPIPTEVTQLTGISDKD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127
           + D P+F     E  D F     ++   N+ +FDV  +  E  R   D     SR+ID  
Sbjct: 68  VADAPTFRQKAKELADRFT--GCDFAGFNSNRFDVPMLAEEFLRAGVDFDFSKSRLIDAQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
           +I    H   R +L +  K Y
Sbjct: 126 NIY---HKMERRNLAAAYKFY 143


>gi|323467153|gb|ADX70840.1| DNA polymerase III [Lactobacillus helveticus H10]
          Length = 317

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 8/156 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTGL    DRI E+G V++ +    ++   +   P   K      KL+GIT+E L
Sbjct: 35  MLDIETTGLSPFRDRITELGGVKVRNGQIVDQYTNLVKFPKNNKVPAFITKLNGITEEQL 94

Query: 71  KDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+  +I  EF +F  +     I +N  FD+ F+    Q+ N  P+  +  +D L 
Sbjct: 95  TNEGIPAEQAI-KEFREFIGDDTI--IGYNVNFDLNFLYDLSQKYNL-PVLNNDYVDVLR 150

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +A+  +P   N L    +R G  I+   +H  L DS
Sbjct: 151 LAKVYYPRQHNRLIDCMQRAG--IAQVEQHHGLADS 184


>gi|294790489|ref|ZP_06755647.1| DNA polymerase III domain protein [Scardovia inopinata F0304]
 gi|294458386|gb|EFG26739.1| DNA polymerase III domain protein [Scardovia inopinata F0304]
          Length = 241

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 8/166 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+FD ETTG +  + RIIEIG + L         +Q  + P G   +  +  L GI D  
Sbjct: 44  IIFDTETTG-NFSDQRIIEIGGLFLRKGVPIGE-WQQLINP-GVNITHFSQHLSGINDAM 100

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P  S++    W   + QN   + +N  FD+  +N E  R+    +  S +ID + I
Sbjct: 101 IANEPPASTVIP--WFINSIQNLTIVGYNVNFDINALNEEANRLGMSGISVSNVIDVIDI 158

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           AR+  P+S +  L  +     + +S   KH AL D+ L    + KM
Sbjct: 159 ARQSLPNSPSYSLEQVA--ILLNVSDTEKHRALDDAILTWKCWQKM 202


>gi|269219439|ref|ZP_06163293.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269211135|gb|EEZ77475.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 589

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 11/171 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG     + I EIGAV++    +T   F   + P G+        L GIT   
Sbjct: 45  VVVDLETTGAKPGPESITEIGAVKVRG-GETVGEFSTLVNP-GQPIPAFITSLTGITTAM 102

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPS-RIIDTL 127
               P  +++     +F     +  + AHNA+FDVG + A       D   PS R++DT+
Sbjct: 103 TARAPRIAAVIPSLIEFLCAGPSTVVAAHNARFDVGHLKAAFA--GADFTWPSVRVLDTV 160

Query: 128 SIARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++ARR   S       L++L    G T +    H AL D+    DV   M+
Sbjct: 161 ALARRAFSSDEVPNFKLSTLAGACGATTA--PNHRALDDARATVDVLHAML 209


>gi|260893685|ref|YP_003239782.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
 gi|260865826|gb|ACX52932.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
          Length = 233

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 15/170 (8%)

Query: 10  IVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTGL     D II +GAV L         F   + P GR+  P   KL GI+  
Sbjct: 48  VAFDLETTGLKPGAGDEIIALGAVRLRGNELLYPAFDQLVRP-GRRVPPLVEKLTGISSG 106

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P  +S+   F  + +      +  N  FD+ F+N  L+   +  L    ++D  +
Sbjct: 107 LLRYAPPLASVLPFFLGYLSRGFP--LGFNVAFDLAFLNQALKPHGR--LSEQAVLDVWT 162

Query: 129 IAR----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +AR    R   ++ +++ S  K     ++   +H AL D+ + + +++K+
Sbjct: 163 VARALDARCEHATMDEIASFLK-----VNLEGRHTALGDALIHARMWLKL 207


>gi|229168326|ref|ZP_04296051.1| DNA polymerase III alpha subunit [Bacillus cereus AH621]
 gi|228615152|gb|EEK72252.1| DNA polymerase III alpha subunit [Bacillus cereus AH621]
          Length = 318

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P   ++ P+ +  L GIT+ 
Sbjct: 14  VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNP--ERSIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   + +IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 127

Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 128 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170


>gi|161507964|ref|YP_001577928.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348953|gb|ABX27627.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 317

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 8/156 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTGL    DRI E+G V++ +    ++   +   P   K      KL+GIT+E +
Sbjct: 35  MLDVETTGLSPFRDRITELGGVKVRNGQIVDQYTNLVKFPKNNKVPAFITKLNGITEEQI 94

Query: 71  KDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+  +I  EF +F  +     I +N  FD+ F+    Q+ N  P+  +  +D L 
Sbjct: 95  TNEGIPAEQAI-KEFREFIGDDTI--IGYNVNFDLNFLYDLSQKYNL-PVLNNDYVDVLR 150

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +AR  +P   N L    +R G  I+   +H  L DS
Sbjct: 151 LARVYYPRQHNRLIDCMQRAG--IAQVEQHHGLADS 184


>gi|83757883|gb|ABC45996.1| exonuclease family [Salinibacter ruber DSM 13855]
          Length = 538

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 13/159 (8%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLKDKPSFSSIFSEFWD 85
           +EIGAV++ D S  +R FQ  + P   ++ P  + K+ GIT   + + P    +  ++  
Sbjct: 1   MEIGAVKVRDGSVVDR-FQQLVNPQ--QSVPGRITKMTGITTGMVFEAPPADEVLPDYRA 57

Query: 86  FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSL 144
           F    +   +AHN  FD  F++AELQR+  + L P+  + T+ +ARR  P      L+ L
Sbjct: 58  FLG--DGILVAHNVSFDGSFLDAELQRMGDETL-PNETLCTVRLARRLLPGLDSKGLSRL 114

Query: 145 CKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            + Y I +  R  H AL D+   S V  + +   SQ+ F
Sbjct: 115 AQFYDIDVEGR--HRALGDAEATSVVLRRFV---SQLAF 148


>gi|217973787|ref|YP_002358538.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223]
 gi|217498922|gb|ACK47115.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223]
          Length = 300

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 3/105 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ETTGL +  D+IIEI A++    S  +  F+  + PN  K S +   + GIT+  
Sbjct: 20  IALDAETTGLSADVDKIIEIAAIKFDLLSNDHPVFEALINPN-VKVSRKITSITGITNAM 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           L D+ +F+ I  +   F  +     +A+NAKFD GF++ E   + 
Sbjct: 79  LADQETFTDIAQDLKQFIGDL--PIVAYNAKFDKGFLDTEFANVG 121


>gi|229018800|ref|ZP_04175648.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
 gi|229025042|ref|ZP_04181470.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
 gi|228736248|gb|EEL86815.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
 gi|228742492|gb|EEL92644.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
          Length = 315

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 11/164 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+  
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RPIPNRITSLTGITNYR 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ +
Sbjct: 69  VSDAPTIEEVLPFFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           A++  KH +  + L +L +  GI +   S H A  D    + VY
Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVY 165


>gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260650992|emb|CBG74110.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 331

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 12/197 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRII      L    +    +   + P   +  P  + +HG+T + L
Sbjct: 24  VVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNP---ERDPGPVWIHGLTSDVL 79

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  I  EF     ++    +AHNA FD   I  E  R   +     R+  T++++
Sbjct: 80  EGAPLFRDIAQEFSARLADRVL--VAHNAVFDWSMIAREYARAETEAPVRQRLC-TIALS 136

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           +    P   + L SL   +G+ +  R+ H AL D+ +L++ +   +   +  N     +E
Sbjct: 137 KELGLPLPNHKLESLAAHFGV-VQQRAHH-ALDDARVLAEAFRPSLRAAAASNVRLPLHE 194

Query: 190 DRFFKE--EKKTVPNIS 204
            R   E  E    P I 
Sbjct: 195 CRPLTEWRESPAAPRIG 211


>gi|254786953|ref|YP_003074382.1| ribonuclease T [Teredinibacter turnerae T7901]
 gi|237685615|gb|ACR12879.1| ribonuclease T [Teredinibacter turnerae T7901]
          Length = 211

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G ++  D ++EI AV L +D   + + + TF   + P  G      AL+  G
Sbjct: 21  VIIDVETGGFNAATDALLEIAAVTLHMDDNGFLQRDETFSFHVEPFEGANIEKAALEFTG 80

Query: 65  I-----TDEFLKDKPSFSSIFS---EFWDFFNEQNAEWIAHNAKFDVGFINAELQR--IN 114
           I       E + +  +   IF+   +    +    A  + HNA FD+ F+NA   R  I 
Sbjct: 81  IDLESEDREAVPEAIALGDIFAGVRKAVKGYGCNRAVLVGHNAHFDLNFLNAAAARSDIK 140

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++           L + CK  G+  S+R  H A  D+   +D++  M
Sbjct: 141 RNPFHPFSCFDTATLCGLIF--GHTVLATSCKLAGLEFSNREAHSAAYDAEKTADLFCLM 198

Query: 175 M 175
           +
Sbjct: 199 V 199


>gi|229061173|ref|ZP_04198523.1| DNA polymerase III alpha subunit [Bacillus cereus AH603]
 gi|228718044|gb|EEL69684.1| DNA polymerase III alpha subunit [Bacillus cereus AH603]
          Length = 318

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P   ++ P+ +  L GIT+ 
Sbjct: 14  VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNP--ERSIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   + +IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 127

Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 128 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170


>gi|229134413|ref|ZP_04263226.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196]
 gi|228649034|gb|EEL05056.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196]
          Length = 318

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P   ++ P+ +  L GIT+ 
Sbjct: 14  VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNP--ERSIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   + +IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 127

Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 128 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170


>gi|309379715|emb|CBX21704.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 326

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           M   V D+E+TG +   DR+ E+  V+          + V    N +K  P+   +L GI
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV----NPKKPIPQFVAELTGI 74

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    IAHN++FD  F+  E  R       P+  + 
Sbjct: 75  SDGMVVDAPVFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 131 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173


>gi|325103921|ref|YP_004273575.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145]
 gi|324972769|gb|ADY51753.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145]
          Length = 459

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 76/149 (51%), Gaps = 9/149 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69
           + DIETTG  +   R+ EI AV + D  +    +   + P  +++ P  ++ L GI+D+ 
Sbjct: 9   IVDIETTGAYAGGSRMTEI-AVLIHDGVQVVEEYHTLINP--KQSIPHYIQVLTGISDDM 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P F ++ ++ +     Q+  ++AHN  FD  F++++L+        P   + T+ +
Sbjct: 66  VSDAPEFENVAAKVFSLL--QDKIFVAHNVGFDYSFVHSQLRECGYYLRSPK--LCTVRL 121

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSK 157
           +R+  P      L  LC+  GI I+ R +
Sbjct: 122 SRKCFPGLPSYSLGKLCQSLGIAINDRHR 150


>gi|294853583|ref|ZP_06794255.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
 gi|294819238|gb|EFG36238.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
          Length = 191

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 4/149 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++  +   P  + +SP+A  
Sbjct: 33  IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 90

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 91  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQP 149

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGI 150
            +  T+  ARR        L+   +R  +
Sbjct: 150 -VYCTMDGARRLWRGDSTKLDHCSQRLAL 177


>gi|148977600|ref|ZP_01814176.1| ribonuclease T [Vibrionales bacterium SWAT-3]
 gi|145963115|gb|EDK28383.1| ribonuclease T [Vibrionales bacterium SWAT-3]
          Length = 211

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A+ L +D +   +   T    + P  G      AL  +G
Sbjct: 20  VVIDVETAGFNAETDALLEICAITLKMDENGDLQPASTLHFHIEPFEGANIEQAALDFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD+ F+NA  +R  +
Sbjct: 80  IKDPFSPLRGAVSEQEALKEIYKLVRKEQKASDCSRAIMVAHNATFDLNFVNAASERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++   +   +  L   C+  G+   ++  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTAALSGLAY--GQTVLAKACRTAGMEFDNKEAHSALYDTQKTTELFCG 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|188995649|ref|YP_001929901.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis
           ATCC 33277]
 gi|188595329|dbj|BAG34304.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis
           ATCC 33277]
          Length = 259

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 24/171 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I FD+ETTG+D   DRI+EI  ++++ D S+  +T ++   P  R   PE+  +HGITDE
Sbjct: 10  IFFDLETTGVDLVRDRIVEISILKVMPDGSEECKTRRI--NPE-RSIPPESTAIHGITDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIA-------HNAKFDVGFINAELQRINKD-PLDP 120
            +KD P F S+            A+WI        ++ +FDV  +  E  R   D  L  
Sbjct: 67  DVKDCPPFRSVAKSL--------AQWIEGCDLAGFNSTRFDVPMLVEEFLRAGVDIDLRH 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            ++ID  +I  +  P +         R+    +  + H A  D+    DV+
Sbjct: 119 RKLIDVQTIFHKMEPRTL----EAATRFYCNRTLENAHSAEADTRATYDVF 165


>gi|81428950|ref|YP_395950.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78610592|emb|CAI55643.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 178

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 7/115 (6%)

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGI ++ +   P F  ++     FF  Q    +AHNA FD+G + + LQ  + D  +P
Sbjct: 51  QIHGIYEDDVAQAPKFDQVWPHIAPFFTPQKL-VVAHNATFDIGVLRSTLQ--HYDIPEP 107

Query: 121 SRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             + +DTL+ +RR +P  +N  LN+LC    I +   + H AL DS   + + IK
Sbjct: 108 HYLALDTLTTSRRLYPQFKNHKLNTLCTNLEIPL--ENHHNALADSIACAKILIK 160


>gi|113460646|ref|YP_718712.1| ribonuclease T [Haemophilus somnus 129PT]
 gi|123327179|sp|Q0I251|RNT_HAES1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|112822689|gb|ABI24778.1| RNAse T [Haemophilus somnus 129PT]
          Length = 218

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 26/195 (13%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCP 50
           + KN+ R    ++ D+ET G +++ D ++E+ A+         L+   K +   Q F   
Sbjct: 13  LLKNRFRGFFPVIIDVETAGFNAQTDALLELAAITLKMDENGLLVPDEKCHFHIQPF--- 69

Query: 51  NGRKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFD 102
            G   +PE+LK +GI  D  L+   S +   SE +            Q +  +AHNA FD
Sbjct: 70  EGANINPESLKFNGIDIDNPLRGAISENVAMSELFKMVRHGQKKADCQRSVIVAHNATFD 129

Query: 103 VGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
             F+ A  +R  I ++P  P  I DT +++       +  L   C+   I+   +  H A
Sbjct: 130 QSFVMAAAERTKIKRNPFHPFSIFDTATLSGFMF--GQTVLVKGCQVANISFDGKKAHSA 187

Query: 161 LLDSHLLSDVYIKMM 175
           L D+   ++++  M+
Sbjct: 188 LYDAERTAELFCYMV 202


>gi|223937241|ref|ZP_03629147.1| DNA-directed DNA polymerase [bacterium Ellin514]
 gi|223894026|gb|EEF60481.1| DNA-directed DNA polymerase [bacterium Ellin514]
          Length = 199

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 10/170 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           ++FD+ETTGL S  D II+I AV + +    ++ +F  ++ P GR  S       GIT++
Sbjct: 6   VIFDLETTGLSSYQDEIIQIAAVRMSNGVVCSSDSFFSYVNP-GRSISSFITSYTGITNQ 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
            + D P   ++  +F  +  +  A  IAHN  +FD+ F++A   R N  P       D++
Sbjct: 65  DVGDAPRVGTVLKDFSRYAGK--ATLIAHNGHRFDMKFLHAGCSR-NALPTRAVNYHDSI 121

Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++R    K P   + L+S+  R  I+     +H A  D  LL++   KM
Sbjct: 122 YLSRLVWGKCPGG-HGLDSVLNRLQISNHGVRRHDARGDVELLAEAVEKM 170


>gi|227894158|ref|ZP_04011963.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047]
 gi|227864030|gb|EEJ71451.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047]
          Length = 318

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 9/157 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTGL    DRI E+GAV++ +    ++   +   P   K      KL+GIT+E +
Sbjct: 35  MLDIETTGLSPYRDRITELGAVKVRNNQIVDQYTNLVKFPKNNKVPAFITKLNGITEEQI 94

Query: 71  KDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+  +I  EF +F  +     I +N  FD+ F+    Q+ N  P+  +  +D L 
Sbjct: 95  VNEGIPAEQAI-KEFREFIGDD--PIIGYNVNFDLNFLYDLSQKYNL-PVLNNDYVDVLR 150

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164
           +AR  +P  R N L    +R G  I+   +H  L DS
Sbjct: 151 LARAYYPRERHNRLIDCMQRAG--IAQVEQHHGLADS 185


>gi|282600891|ref|ZP_06257782.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM
           15176]
 gi|282571272|gb|EFB76807.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM
           15176]
          Length = 1347

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 11/170 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +VFD ETTGLDS  + + EIGAV  ++  K N  + F  F+ P G+    + ++L GI D
Sbjct: 322 VVFDTETTGLDSNVEALTEIGAV-YVENGKINEEKKFCTFVNP-GKPIPQKVVELTGIND 379

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126
             + D P+       F +F  +     +AHNA  FD+ FI    ++      D +  IDT
Sbjct: 380 AMVADAPTPEEAIRAFKEFCGDH--VLVAHNAHSFDMLFIRKAGEKAGIS-FDENTYIDT 436

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L + +   P  RN  L+++ K   + I   + H A+ D+  L+ ++  M+
Sbjct: 437 LPMGQALFPGLRNYKLDTINKH--LEIPPFNHHRAVDDAMALARIFEVML 484


>gi|51892851|ref|YP_075542.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51856540|dbj|BAD40698.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 958

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 15/153 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALK-LHGI 65
           +  D+ETTG   ++DR+IE+ AV   D  +    F   +   CP      P+ ++ L GI
Sbjct: 7   VAIDVETTGTSPEHDRLIEVAAVRFEDGREIG-CFSRLIDPGCP-----VPQRIQHLTGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
               L  KP    +  +   F  +     +AHNA FDV F+ A   R  +    P+   D
Sbjct: 61  HPAMLAGKPRIEEVVPDLASFLGD--LPLVAHNAPFDVAFLQAAFARAGRSL--PNWSYD 116

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSK 157
           T  +AR   P +RN  L +L +  G+ + H  +
Sbjct: 117 TAELARVALPLARNHRLATLAELLGLPLEHHHR 149


>gi|302561692|ref|ZP_07314034.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302479310|gb|EFL42403.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 241

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 13/154 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D +NDRI+   A+ + D S        +L   G      A ++HG+T+E L
Sbjct: 11  AFDTETTGVDVENDRIVS-AALVVQDASGARPRVTRWLVNPGVPVPAAATEVHGLTEEHL 69

Query: 71  KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPL------DP 120
           +    + + +  E  +   EQ A     +  NA FD+  ++ EL+R     L       P
Sbjct: 70  QRNGRWPAPVMYEMAEALAEQAAVGRPLVVMNAPFDLTLLDRELRRHRASSLGRWLERSP 129

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
            R++D   + +   ++   R  L  LC  YG+ +
Sbjct: 130 LRVLDPWVLDKHLDRYRKGRRTLTDLCAHYGVPL 163


>gi|332980705|ref|YP_004462146.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1
           BON]
 gi|332698383|gb|AEE95324.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1
           BON]
          Length = 288

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +  D+ETTGL+  ND+IIE+ AV+  D    +R F   +  N   + P  + +++ ITDE
Sbjct: 116 VAIDLETTGLNPINDKIIEVAAVKFKDGQIIDR-FTTLI--NPEIHIPSGITRINHITDE 172

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P  + +     +F   +++  + HNA FD+ F+         D    +  IDTL 
Sbjct: 173 MVKDAPVLAEVMPCLVNFI--EDSILVMHNASFDLKFLKHHAMNFGHD--INNSYIDTLP 228

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R       N  L ++    G  I   S H A  D+ +   V IK +
Sbjct: 229 TCRNIFSGLENYKLPTIASHLG--ICGDSFHRACNDAEICGQVLIKCI 274


>gi|269213464|ref|ZP_05982022.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           cinerea ATCC 14685]
 gi|269146173|gb|EEZ72591.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           cinerea ATCC 14685]
          Length = 470

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   V D+E+TG +   DR+ E+  V+     +  R  +     N +K  P+ +  L GI
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVSGLTGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    IAHN++FD  F+  E  R       P+  + 
Sbjct: 84  SDGMVADAPVFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|329940730|ref|ZP_08290010.1| exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329300024|gb|EGG43922.1| exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 336

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 10/162 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRII      L    +    +   + P   +  P  + +HG+T E L
Sbjct: 24  VVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTTVNP---ERDPGPVWIHGLTSEAL 79

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  +  EF      +    +AHNA FD   I  E  R  ++P    R+  T++++
Sbjct: 80  EGAPLFHEVAGEFAARLTGRV--LVAHNAVFDWSMIAREYARAGQEPPVRQRLC-TIALS 136

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +    P   + L +L   +G+    R  H AL D+ +L++ +
Sbjct: 137 KALALPLPNHKLETLAAHFGVV--QRRAHHALDDARVLAEAF 176


>gi|260663059|ref|ZP_05863952.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           fermentum 28-3-CHN]
 gi|260552680|gb|EEX25680.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           fermentum 28-3-CHN]
          Length = 946

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 19/172 (11%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D+ETTG   K   RII+IG V + D    N  F+  + P  R   P  + +L GI + 
Sbjct: 16  VVDLETTGTSVKTGSRIIQIGCVLVQDGQVINE-FETKINP--RTVVPLTIEQLTGIKNN 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127
            +KD P F  +        ++    ++AHN  FD  F+NAE +R  + PL  P+  IDT+
Sbjct: 73  DVKDAPLFEDVAPTLKSLLDD--TIFVAHNVNFDFPFLNAEFERAGEAPLTIPA--IDTV 128

Query: 128 SIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++++   P++ +    DL S      + I H   H A+ D+   + + I+++
Sbjct: 129 TLSQILMPTAPSFRLRDLTSY-----LAIDHDQPHSAVSDAVATAHLLIELL 175


>gi|319649890|ref|ZP_08004041.1| hypothetical protein HMPREF1013_00645 [Bacillus sp. 2_A_57_CT2]
 gi|317398470|gb|EFV79157.1| hypothetical protein HMPREF1013_00645 [Bacillus sp. 2_A_57_CT2]
          Length = 242

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 8/167 (4%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           VFDIETTG    K D+II IGAV+++    +  +F   L    +  S E  +L G+++  
Sbjct: 60  VFDIETTGFYPDKGDQIISIGAVKIIKGKVSEDSFYS-LARFEKPLSNEIKELTGLSEAD 118

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+  P  S +   F +F   ++   +AH+A  +  F+     ++ + P    RI+DT  +
Sbjct: 119 LEKAPPLSEVLISFLEFV--KDMPLVAHHANHEKSFMQHSCWKLFRTPFK-YRILDTSFL 175

Query: 130 AR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R   H  S   L  LC+ Y I +  + +H AL D+ L + ++ +++
Sbjct: 176 YRIADHNKSFWRLEDLCEFYSIPV--KDRHHALGDAKLTALLWCRLI 220


>gi|284030730|ref|YP_003380661.1| DNA polymerase III subunit epsilon [Kribbella flavida DSM 17836]
 gi|283810023|gb|ADB31862.1| DNA polymerase III, epsilon subunit [Kribbella flavida DSM 17836]
          Length = 602

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 85/189 (44%), Gaps = 22/189 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            V D+ETTG    +  I EIGAV++         FQ  + P      P    L GITD  
Sbjct: 40  CVVDLETTGGAPGDSGITEIGAVKVRAGELVGE-FQSLVNP-AEPIPPFIAVLTGITDLM 97

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128
           +   P   S+   F +F   +    +AHNA FDVGF+  + Q    D P  P  ++DT  
Sbjct: 98  VASSPRIGSVLPAFLEF--ARGCVLVAHNAPFDVGFLKHDSQVHGYDWPDFP--VVDTAL 153

Query: 129 IARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQI 181
           +ARR     + P+ +  L +L K +  T +    H AL D+    DV   +   VG    
Sbjct: 154 LARRVLTPDEVPNCK--LGTLAKLFRATTT--PNHRALSDARATVDVLHGLFERVG---- 205

Query: 182 NFGFKTNED 190
           + G +T ED
Sbjct: 206 SLGVQTLED 214


>gi|169831719|ref|YP_001717701.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638563|gb|ACA60069.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 236

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 11/158 (6%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           V D ETTGL     D +I +  V ++     N  F   + P   +  PE A  + GIT E
Sbjct: 51  VIDTETTGLRPDAGDEVISVACVRVVSAKIQNDYFYTLVDPE--REVPELAATITGITTE 108

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            ++ +P    +         E     I   N +FD+ F+N  L+R     L+P  ++D L
Sbjct: 109 RVQGQPVLEKVLPRM---LREMAGGVITGFNIQFDLVFLNNGLKRKCGTTLNPPMVLDVL 165

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           S+ R   P +R   L ++ + Y I++  R  H AL D+
Sbjct: 166 SLCRILKPRARTFGLGAMAREYQISVKDR--HNALGDA 201


>gi|184155667|ref|YP_001844007.1| helicase [Lactobacillus fermentum IFO 3956]
 gi|183227011|dbj|BAG27527.1| helicase [Lactobacillus fermentum IFO 3956]
          Length = 943

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 19/172 (11%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D+ETTG   K   RII+IG V + D    N  F+  + P  R   P  + +L GI + 
Sbjct: 13  VVDLETTGTSVKTGSRIIQIGCVLVQDGQVINE-FETKINP--RTVVPLTIEQLTGIKNN 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127
            +KD P F  +        ++    ++AHN  FD  F+NAE +R  + PL  P+  IDT+
Sbjct: 70  DVKDAPLFEDVAPTLKSLLDD--TIFVAHNVNFDFPFLNAEFERAGEAPLTIPA--IDTV 125

Query: 128 SIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++++   P++ +    DL S      + I H   H A+ D+   + + I+++
Sbjct: 126 TLSQILMPTAPSFRLRDLTSY-----LAIDHDQPHSAVSDAVATAHLLIELL 172


>gi|332291593|ref|YP_004430202.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169679|gb|AEE18934.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 232

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 15/176 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +VFD ETTGL  K DRI+ IGAV +++      ++ +++L  +  K  PE+ K+HGI 
Sbjct: 46  RFVVFDTETTGLHYKEDRILSIGAVTVINNEISIAQSLELYLKQDIYK--PESAKIHGIL 103

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                ++ +      +  +F        I H+  FDV  IN+ L+R     L  +R++DT
Sbjct: 104 RNGSYEQVNEQEAIEKCLEFIGTDI--LIGHHIGFDVAVINSALKRAQLGKLK-NRVLDT 160

Query: 127 LSIARR-KHP------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++ +R  HP        R  L+ L +   I +  R  H +  D+ + +  +IK++
Sbjct: 161 ETLYKRLVHPINRPLQEKRYTLDELAEALKIPLHDR--HTSAGDALITAIAFIKIV 214


>gi|225018549|ref|ZP_03707741.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum
           DSM 5476]
 gi|224948681|gb|EEG29890.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum
           DSM 5476]
          Length = 319

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 93/221 (42%), Gaps = 23/221 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG D   D IIE+GA+ + +  +   +F     P  R      ++L GI++E 
Sbjct: 23  VVIDLETTGYDPHRDEIIELGALRIHE-GEVVESFSSLTKPQ-RDLDDYIIQLTGISNEM 80

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P  S +F  + DF  +     + HN  FDV FI     +     L  + ++D L +
Sbjct: 81  LASAPELSDVFPRYLDFIGDSIV--VGHNVHFDVNFIYDTCIK-ESLKLFTNDLVDLLWL 137

Query: 130 ARRKHPSSRNDLNS--LCKRYG-ITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +R+  P    DL S  LC+      I     H +L D     + + K  +   +  +G  
Sbjct: 138 SRKLLP----DLTSHKLCRVSSHFNICVEGMHRSLFDCKTTFECFEKCRILAKE-RYGQV 192

Query: 187 TNEDRFFKEEKKT----------VPNISLLKRDKPLFTRIT 217
            N  + F+  K+T          +P         PLF ++ 
Sbjct: 193 DNLSQVFRPIKRTPCPKLKACDILPECDEFDEAHPLFNKVC 233


>gi|116492693|ref|YP_804428.1| Rad3-related DNA helicase [Pediococcus pentosaceus ATCC 25745]
 gi|116102843|gb|ABJ67986.1| Rad3-related DNA helicase [Pediococcus pentosaceus ATCC 25745]
          Length = 929

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 19/177 (10%)

Query: 5   NKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KL 62
           NK +  V D+E TG D   D RII+IG    ++  K   TFQ  + P  ++  P  + KL
Sbjct: 2   NKTKYAVVDLEMTGSDFDGDNRIIQIGCA-FVENGKIVDTFQSKVNP--QRPIPAGITKL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121
            GITDE +++ P F+ I  E +      +  ++AHN +FD  F+N EL R     L+ P+
Sbjct: 59  TGITDEQVQNAPKFNDIVDEVYRKL--VDTVFVAHNVEFDFPFLNQELVRSGYPELNIPA 116

Query: 122 RIIDTLSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+S+++     ++     DL S  K     I H   H A  D+   +++ I +
Sbjct: 117 --VDTVSLSQIVFSFTKGYRLRDLTSYLK-----IEHDDPHSADSDAIATANLLIAI 166


>gi|317133746|ref|YP_004089657.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
 gi|315450208|gb|ADU23771.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
          Length = 284

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 12/166 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQ---VFLCPNGRKNSPEALKLHGIT 66
           V D+ETTG  +K+  + +   ++ ++D S T +  +   VF+ P    N     ++ G T
Sbjct: 26  VIDLETTGRSAKDSYVFQFAGLKCIIDKSLTPKIIESLCVFIKPEVPLNE-RITEITGFT 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LKDK    ++F     F +  N    +HN  F+  F+NA   R N     P+ IIDT
Sbjct: 85  NEDLKDKADEETVFPRIKKFMD--NCIMCSHNTAFEESFMNAMYAR-NGCVFKPAEIIDT 141

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITIS---HRSKHGALLDSHLLS 168
           L ++R  H   ++  L  + +RYGI      H ++   ++   LLS
Sbjct: 142 LKMSRDLHKEEKSHKLGVIAERYGIADGVKFHDARDDTIICGRLLS 187


>gi|262365379|gb|ACY61936.1| DNA polymerase III, epsilon chain [Yersinia pestis D182038]
          Length = 122

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 39/58 (67%)

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G + + F  +
Sbjct: 1   MARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLTFSME 58


>gi|59711532|ref|YP_204308.1| ribonuclease T [Vibrio fischeri ES114]
 gi|197335112|ref|YP_002155688.1| ribonuclease T [Vibrio fischeri MJ11]
 gi|59479633|gb|AAW85420.1| ribonuclease T (RNase T) [Vibrio fischeri ES114]
 gi|197316602|gb|ACH66049.1| ribonuclease T [Vibrio fischeri MJ11]
          Length = 222

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 21/193 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGR 53
           + KN+ R    +V D+ET G ++K D ++EI AV L    + N     T    + P  G 
Sbjct: 10  LLKNRFRGYFPVVIDVETAGFNAKTDALLEICAVTLAMDEQGNLKPATTIHFHVTPFEGA 69

Query: 54  KNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG 104
               EAL+ +GI D F  L+   +      E +    +       Q A  +AHNA FD  
Sbjct: 70  NIEKEALEFNGIRDPFSPLRGAVTEDVALKEIFKLVRKEQKQHDCQRAIMVAHNAHFDHS 129

Query: 105 FI--NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+   A   ++ + P  P    DT +I+       +  L   CK  G+    +  H AL 
Sbjct: 130 FVMEAAARTKLKRIPFHPFCTFDTAAISGLA--LGQTVLAKACKTAGMDFDGKEAHSALY 187

Query: 163 DSHLLSDVYIKMM 175
           D+   ++++ +++
Sbjct: 188 DTEKTAELFCRIV 200


>gi|332290155|ref|YP_004421007.1| ribonuclease T [Gallibacterium anatis UMN179]
 gi|330433051|gb|AEC18110.1| ribonuclease T [Gallibacterium anatis UMN179]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 27/186 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           ++ D+ET+GL+++ D ++E+ A+ +      L +      FQ+ L   G    P +LK++
Sbjct: 33  VIVDVETSGLNAQTDGLLELAAITVKMDEQGLLHPDEKCHFQIKLF-EGANVDPNSLKIN 91

Query: 64  GITDEFLKDKPSFSSI--FSEFWDFF-----NEQNAEW-----IAHNAKFDVGFINAELQ 111
           GI      D P   ++   +    FF      ++ AE      +AHNA FD  F+ A + 
Sbjct: 92  GIN----PDDPQREAVDELTALTGFFQMVRRGQKAAECKRSILVAHNAMFDYNFLMAAIN 147

Query: 112 R--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           R  I ++P  P    DT ++A       +  L + C   GI       H AL D+   ++
Sbjct: 148 RTGIKRNPFHPFSTFDTATLAGFMF--GQTVLRTACDNAGIPFEPSKAHSALYDTEKTAE 205

Query: 170 VYIKMM 175
           ++  M+
Sbjct: 206 LFCLMV 211


>gi|148656033|ref|YP_001276238.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1]
 gi|148568143|gb|ABQ90288.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1]
          Length = 956

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 15/168 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           I  D+ETTGL++  D IIEI AV+  +  +   TF   + P    + P  + +L GIT +
Sbjct: 6   IAIDVETTGLEAGVDEIIEIAAVK-FNADEVLETFSTLVQP--VHSLPLNSSRLTGITAD 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ +   F  F   +N   + HN +FD+  + A+  R+      P    DT  
Sbjct: 63  MLASAPRFAEVAPRFAAFL--KNYPLVGHNVEFDLRMLRAQGMRL------PQPAFDTFE 114

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A    P +    L++L    G  I H   H AL D+ +   +++ ++
Sbjct: 115 LATLLMPRTPAYRLSALAATLG--IHHDEAHRALSDADVTRQIFLYLL 160


>gi|332971471|gb|EGK10424.1| ribonuclease T [Psychrobacter sp. 1501(2011)]
          Length = 268

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 20/191 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R  K   +V D+ET G D+K D ++E+  + ++   +            L P  G     
Sbjct: 57  RFRKFLPVVVDVETAGFDAKTDALLELACIPIIMDEQGKFIPGEALNAHLNPFEGANLEQ 116

Query: 58  EALKLHGITDE-------FLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFIN 107
            AL   GI            +++P+   IF E      E +      + HNA FD+ F+N
Sbjct: 117 RALDFTGIDPNNPMRKAIAEEEQPALRRIFKELKAVRKENDCLKCILVGHNAHFDLSFLN 176

Query: 108 AELQRINK---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A ++R N    +P     ++DT++++       +  L   CK  GI  S    H AL D+
Sbjct: 177 AAIERTNSKNHNPFHQFSVLDTVTLSALAF--GQTVLARACKAAGIEFSGTEAHSALYDT 234

Query: 165 HLLSDVYIKMM 175
              ++++  ++
Sbjct: 235 QKTAELFCHIL 245


>gi|71894029|ref|YP_278137.1| DNA polymerase III PolC [Mycoplasma synoviae 53]
 gi|71850817|gb|AAZ43426.1| DNA polymerase III alpha subunit [Mycoplasma synoviae 53]
          Length = 1451

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 13/174 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFDIETT L + +  IIE  A  + + +  ++   +F+  +  K S    +L  IT+
Sbjct: 410 RYVVFDIETTSLSAYHGEIIEFAATIIENKAVVDKV-DIFI-KSKEKLSHFTTRLTSITN 467

Query: 68  EFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--II 124
           E L  K         + +D  N   A  +AHNA FD  F+   +++ +++ +   +   I
Sbjct: 468 EMLDQKGIELKEALQKIYDVLNNNVA--VAHNANFDYNFL---IEKFDQNNMQAPKCTFI 522

Query: 125 DTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           D+L ++R   +H    N LN  C+   +       H AL D+ +L+D +I+  +
Sbjct: 523 DSLVVSRILFEHRDKHN-LNEFCRNLSVNYDTEKAHRALYDTEVLADAWIEATL 575


>gi|308190354|ref|YP_003923285.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
 gi|307625096|gb|ADN69401.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
          Length = 1461

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 16/173 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDE 68
           + FDIETTGL  +   IIE G++ +    K  R  Q F+ C    K  P    L GIT+ 
Sbjct: 427 VSFDIETTGLCPRFAEIIEYGSLPIHSNMKYGRKTQFFIKCQEPIK--PFTENLTGITNA 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            ++   S   +       +N+ N +  +AHNA+FD  F+  +  R  K       +IDTL
Sbjct: 485 MIEK--SGLELKEALQKIYNDLNGKIALAHNARFDFNFLKEKF-RQAKIEFPNVTVIDTL 541

Query: 128 SIARRKHPSS-RNDLNSLCKRYGI----TISHRSKHGALLDSHLLSDVYIKMM 175
            ++R   P + ++ L  +  R G+    T++HR  +    D+ +L++V++ +M
Sbjct: 542 IVSRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDY----DAKVLAEVWVALM 590


>gi|304440352|ref|ZP_07400241.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371104|gb|EFM24721.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 296

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 11/162 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIET GLD K ++IIEIGA++    S +   F   +  +  K     ++L GITD+ 
Sbjct: 130 VFLDIETDGLDEKTNKIIEIGAIK----SDSKEEFHKIVKID-TKLPKNIIELTGITDKE 184

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   +   I  E  +F   ++   + +  KFD+ FIN +L+    D L  ++  D +  
Sbjct: 185 LESGENIKEILKELKEFIGLEDL--VGYGIKFDIKFINRKLKLNGLDVL-TNKTWDLMDF 241

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            +R+     N  L ++ K YG  I  +  H AL DS L+ ++
Sbjct: 242 VKREKSFLENYKLETVLKEYG--IDKKVPHRALEDSKLIYEL 281


>gi|325478691|gb|EGC81802.1| CRISPR-associated endoribonuclease Cas2 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 292

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 17/169 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV------ELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V DIET+GLD +  +IIEIGAV      E+LD  ++       L     K S E +KL 
Sbjct: 126 VVVDIETSGLDYEKHKIIEIGAVLTNSQGEVLDKFES-------LIRQEIKLSNEIIKLT 178

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD  L +      +  +F  F   +N   + +N  FD+ F+N  L++ +   +  +  
Sbjct: 179 GITDNDLINGGDEKKVLEDFVCFI--KNHPLVGYNFNFDMKFLNYNLEKNSLKEITNTTY 236

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDV 170
                + R K       L ++ K YGI   + HR+   AL+  +L S V
Sbjct: 237 DLKTYVKREKMFLKNYKLETVLKEYGIKKKVDHRALADALVTVNLASQV 285


>gi|302550499|ref|ZP_07302841.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
 gi|302468117|gb|EFL31210.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
          Length = 330

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 12/197 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRII      L    +    +   + P   +  P  + +HG+T E L
Sbjct: 25  VVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTMVNP---ERDPGPVWIHGLTSEAL 80

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  I  EF      +    +AHNA FD   I  E  R  ++     R+  T++++
Sbjct: 81  EGAPLFQDIAEEFTTRL--EGRVLVAHNAVFDWQMIAREYARAQREVPVRQRLC-TIALS 137

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           +    P   + L SL   YG+    R  H AL D+ +L++ +   +   +         E
Sbjct: 138 KELGLPLPNHKLESLAAHYGVV--QRRAHHALDDARVLAEAFQPSLRAAAAGGVRLPLLE 195

Query: 190 DRFFKE--EKKTVPNIS 204
            R   E  ++   P I 
Sbjct: 196 CRPLTEWSDRPATPRIG 212


>gi|29828689|ref|NP_823323.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
           MA-4680]
 gi|29605793|dbj|BAC69858.1| putative DNA polymerase III epsilon subunit [Streptomyces
           avermitilis MA-4680]
          Length = 240

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 23/158 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68
           I FD+ETTG D +  RI+    +E+       R  + +L   G +   +A+ +HGIT+E 
Sbjct: 9   IGFDLETTGTDPREARIVTGAVIEVKGQEPVGR--REWLADPGVEIPADAVAVHGITNER 66

Query: 69  -FLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118
              +  P      S +     +W          +A+NA FD+  ++AEL+R     L   
Sbjct: 67  AAAEGGPPDRVAESLAQTLVGYW----RTGVPVVAYNATFDLTLLSAELRRYGLPSLRER 122

Query: 119 ----DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGI 150
               DP+ +ID  +I R   ++   + +L ++C  YG+
Sbjct: 123 LDGRDPAPVIDPYTIDRWVDRYRRGKRNLEAVCTEYGV 160


>gi|257867744|ref|ZP_05647397.1| DNA polymerase III [Enterococcus casseliflavus EC30]
 gi|257874072|ref|ZP_05653725.1| DNA polymerase III [Enterococcus casseliflavus EC10]
 gi|257801827|gb|EEV30730.1| DNA polymerase III [Enterococcus casseliflavus EC30]
 gi|257808236|gb|EEV37058.1| DNA polymerase III [Enterococcus casseliflavus EC10]
          Length = 918

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG DS  DRII+ G V + D    NR F   + P+ R+ S +  +L  IT++ +
Sbjct: 7   VVDLETTGTDSTIDRIIQFGCVLVQDGKIINR-FAADINPD-RRISKQIQRLTHITNQQV 64

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
              P F  I    ++  +  N  ++AHN  FD  F++ E  R    PL  P   IDT+ +
Sbjct: 65  SKAPYFEDIADTIYNLLS--NTIFVAHNIYFDYHFLSNEFVRCGLPPLSIPG--IDTVEL 120

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           A+   P+ S   L  L    G    H + H A  D+ + + +++
Sbjct: 121 AQVFLPTESSFRLGDLADSIG--FRHDNPHQADSDAEVTAALFL 162


>gi|89073343|ref|ZP_01159867.1| ribonuclease T [Photobacterium sp. SKA34]
 gi|89050830|gb|EAR56304.1| ribonuclease T [Photobacterium sp. SKA34]
          Length = 221

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L +D   + K   T    + P  G     EAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVSPFEGAILHKEALDFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFW-DFFNEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 80  IRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHSFVMAASERAKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C+   I   +R  H AL D+   ++++ +
Sbjct: 140 KRNPFHPFATFDTAALSGLAF--GQTVLAKACQTANIPFDNREAHSALYDTERTAELFCE 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|315038988|ref|YP_004032556.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112]
 gi|325957414|ref|YP_004292826.1| DNA polymerase III [Lactobacillus acidophilus 30SC]
 gi|312277121|gb|ADQ59761.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112]
 gi|325333979|gb|ADZ07887.1| DNA polymerase III [Lactobacillus acidophilus 30SC]
 gi|327184122|gb|AEA32569.1| DNA polymerase III [Lactobacillus amylovorus GRL 1118]
          Length = 318

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 9/157 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTGL    DRI E+GAV++ +    ++   +   P   K      KL+GIT+E +
Sbjct: 35  MLDIETTGLSPYRDRITELGAVKVRNGQIVDQYTNLIKFPKNNKVPAFITKLNGITEEQI 94

Query: 71  KDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+  +I  EF +F ++     I +N  FD+ F+  +L +  K P+  +  +D L 
Sbjct: 95  VNEGIPAEQAI-KEFREFIDDD--IIIGYNVNFDLNFL-YDLSQKYKLPILNNDYVDVLR 150

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164
           +AR  +P  R N L    +R G  I+   +H  L DS
Sbjct: 151 LARAYYPRERHNRLIDCMQRAG--IAQVEEHHGLADS 185


>gi|90579159|ref|ZP_01234969.1| ribonuclease T [Vibrio angustum S14]
 gi|90439992|gb|EAS65173.1| ribonuclease T [Vibrio angustum S14]
          Length = 221

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L +D   + K   T    + P  G     EAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVSPFEGAILHKEALDFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFW-DFFNEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 80  IRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHSFVMAASERAKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C+   I   +R  H AL D+   ++++ +
Sbjct: 140 KRNPFHPFATFDTAALSGLAF--GQTVLAKACQTANIPFDNREAHSALYDTERTAELFCE 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|325208398|gb|ADZ03850.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis NZ-05/33]
          Length = 469

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   V D+E+TG +   DR+ E+  V+     +  R  +     N +K  P+ +  L GI
Sbjct: 27  MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 82

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 83  SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 138

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 139 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 181


>gi|326773509|ref|ZP_08232792.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
 gi|326636739|gb|EGE37642.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
          Length = 465

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG       + EIGAV++    +    F   + P G     +   L GIT+  
Sbjct: 23  VVVDLETTGGAPGARSVTEIGAVKVRG-GQVLAEFSTLVNP-GVAIPAQITMLTGITNAM 80

Query: 70  LKDKPSFSSIFSEFWDFFN--EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +   P   +    F D+ +    +   +AHNA+FDVG +      +  +  +P R++DTL
Sbjct: 81  VAGAPGVRTCVEAFLDWADLLADDVILVAHNARFDVGHLRGAAAAVGLEWPEP-RVLDTL 139

Query: 128 SIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++ARR    S    + L +L    G     R  H AL D+    DV
Sbjct: 140 ALARRAWTRSEVPNHKLGTLAAFVG--SQTRPTHRALDDARATVDV 183


>gi|169832144|ref|YP_001718126.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638988|gb|ACA60494.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 247

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 13/167 (7%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALK 61
           +K+R +V D ETTG + +  D +I +GAV +   +   R  QVF  L   GR   P    
Sbjct: 51  SKLRFVVLDTETTGFEPAGGDEVIALGAVVV--KNGRPRPEQVFHRLVNPGRSIPPLVTA 108

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DP 120
           L GI+DE +  +    ++   F +F    N     H+  FD+ F+N  L+  +   + +P
Sbjct: 109 LTGISDEAVAGEDDLVAVLPCFLEFLG--NDCLAGHHLGFDLEFLNLRLREFSGAAIRNP 166

Query: 121 SRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHL 166
           +  +DT  IAR  +P+ +   L+++   +GI  + R  H AL D+ L
Sbjct: 167 A--LDTAVIARALYPALKYFSLDAMLSFHGIEPAGR--HTALGDAWL 209


>gi|254672325|emb|CBA05474.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria
           meningitidis alpha275]
          Length = 312

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   V D+E+TG +   DR+ E+  V+          + V    N +K  P+ +  L GI
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV----NPQKPIPQFVAGLTGI 74

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 75  SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 131 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173


>gi|325204438|gb|ADY99891.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M01-240355]
          Length = 470

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   V D+E+TG +   DR+ E+  V+     +  R  +     N +K  P+ +  L GI
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 84  SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|317128618|ref|YP_004094900.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473566|gb|ADU30169.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 922

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++ D+ETTG+   K DRII+I  V +++  K    F  ++ P  R   P    L  I 
Sbjct: 3   RFVIVDVETTGVSFIKGDRIIQIAFV-VIEGKKIIDRFNSYVNPM-RDIPPFIRSLTNIN 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  +KD P+F  +        +   A ++AHN  FD+ FIN EL  +    L    +IDT
Sbjct: 61  DNEVKDAPTFDLVAPRLLQALD--GAFFVAHNVDFDLSFINEELHALGYTGLS-GPVIDT 117

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +++  +P++    L+ L +   + ++H   H A  D+   + +++++M
Sbjct: 118 VELSKIAYPTADGFRLSQLSE--SLHMNHDQPHRADSDAEATALIFLEIM 165


>gi|319788791|ref|YP_004090106.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
 gi|315450658|gb|ADU24220.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
          Length = 177

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 19/178 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG---RKNSPEALKLHG 64
           R IVFD+ET   +  N+R+  IG   + + + T   F  ++ P     R N+    +L G
Sbjct: 3   RYIVFDVETP--NRYNNRMSAIGIAVIENGAVTEEYFS-YVDPQTYFDRFNT----QLTG 55

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI--AHNAKFDVGFINAELQRINKDPLDPSR 122
           I    +   P+F     E W+      +  +  AHNA FD+G +   L+    +  +  +
Sbjct: 56  INKYTVSGAPTFP----ELWERIEPIMSSGVLAAHNAVFDLGVLKKCLKAYGIEWKNTVK 111

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              T+ + RR  P   + LN LC+ YGI + H   H A  DS   +D+ ++    G+Q
Sbjct: 112 YCCTVQMGRRVLPGISHKLNVLCEHYGIALDH---HKADSDSRACADILLRYFESGAQ 166


>gi|229149839|ref|ZP_04278067.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1550]
 gi|228633520|gb|EEK90121.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1550]
          Length = 934

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHNQPHRADSDALATAELFLQFL 167


>gi|15677307|ref|NP_274462.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|7226692|gb|AAF41810.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|316984587|gb|EFV63552.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Neisseria meningitidis H44/76]
 gi|325199934|gb|ADY95389.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis H44/76]
          Length = 470

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   V D+E+TG +   DR+ E+  V+     +  R  +     N +K  P+ +  L GI
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 84  SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|325134568|gb|EGC57212.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M13399]
 gi|325144729|gb|EGC67024.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M01-240013]
 gi|325205795|gb|ADZ01248.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M04-240196]
          Length = 470

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   V D+E+TG +   DR+ E+  V+     +  R  +     N +K  P+ +  L GI
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 84  SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|319651314|ref|ZP_08005444.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp.
           2_A_57_CT2]
 gi|317397094|gb|EFV77802.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp.
           2_A_57_CT2]
          Length = 933

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 84/164 (51%), Gaps = 9/164 (5%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + +V D+ETTG    K D+II+  AV +++  K    +   + P  +   P   +L G++
Sbjct: 4   KYVVVDLETTGNAPKKGDKIIQFAAV-VIENGKITEEYSSLVNPE-QSIPPFIEELTGLS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE +++ P FS I  +       + A ++AHN  FD+ F+  EL     +      ++DT
Sbjct: 62  DEMVENAPLFSEIAPKVLTLL--EGAYFVAHNVLFDLSFLQEELIEAGYNGF-YGPVLDT 118

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + +AR   P++ +  L+ L  R G  ++H   H A  D+++ ++
Sbjct: 119 VEMARILFPTADSFKLSDLALREG--LNHERPHQADSDAYVTAE 160


>gi|295133689|ref|YP_003584365.1| exonuclease family protein [Zunongwangia profunda SM-A87]
 gi|294981704|gb|ADF52169.1| exonuclease family protein [Zunongwangia profunda SM-A87]
          Length = 218

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 89/178 (50%), Gaps = 23/178 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTG D + DRI+ IG V++    K N+     +F+++L     K +P+ +++HG
Sbjct: 38  VVLDTETTGFDQEKDRILSIGCVKI----KNNKLLVADSFEIYL--KQEKFNPDTVEIHG 91

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +      +  S       F  +   +++  +AH+A FD+  INA L+R N  P   +R++
Sbjct: 92  LIKHERFETISEEKAIQLFLKYI--KDSVLVAHHAGFDINMINAALKR-NHLPKLKNRVL 148

Query: 125 DTLSIARRKHPSSR-------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT  + R+    S          L+ +   Y I +  R  H A+ D+ + +  ++K++
Sbjct: 149 DTGILYRKTRIISNFIDQHKTYSLDEVALAYNIDLKDR--HTAIGDAFITAIAFLKIL 204


>gi|56963828|ref|YP_175559.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus clausii KSM-K16]
 gi|56910071|dbj|BAD64598.1| ATP-dependent DNA helicase DinG [Bacillus clausii KSM-K16]
          Length = 942

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 88/168 (52%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D+ETTG    +  ++I+IGAV++   + T+R F  F+ P G    P   +L GITD+
Sbjct: 6   VVIDLETTGNSPDQGAKMIQIGAVKVEGCTITDR-FSTFVDP-GCSIPPFITELTGITDK 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  I ++   F   + +  +AHN  FD GF+ A+L+      L      DT+ 
Sbjct: 64  DVEGAPVFREIATDLLAFM--EGSSLVAHNVPFDKGFLEAQLE-TEGLRLPKCCQFDTVE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R   P+  +  L+ L     + + H   H A  D+ + ++++IK++
Sbjct: 121 LSRVLLPTQESYKLSELSS--SLDMDHDRPHRADSDAEITAELFIKLL 166


>gi|332993984|gb|AEF04039.1| ribonuclease T [Alteromonas sp. SN2]
          Length = 218

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCP-NGRKNSPEALKL 62
           +V D+ET G ++  D ++EI AV +      L Y   ++TF   + P  G    P AL+ 
Sbjct: 18  VVIDVETAGFNAGTDALLEIAAVTVKMEEDGLIYP--DQTFHYHVDPFEGANLEPAALEF 75

Query: 63  HGITDEF-----LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN 114
           +GI         +++  +  S+         + + +    +AHNA FD  F+NA + R N
Sbjct: 76  NGIDPHCALRGAIEESEAMKSLCKGIRKAQKDADCQRSVIVAHNATFDQSFVNAAIARCN 135

Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             + P  P    DT S+A       +  L   C+  GI    +  H AL D+   ++++ 
Sbjct: 136 IKRTPFHPFVSFDTTSLAGLT--LGQTVLVKACRAAGIEFDQKEAHSALYDAQKTTELFC 193

Query: 173 KMM 175
            M+
Sbjct: 194 FMV 196


>gi|325140605|gb|EGC63125.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis CU385]
          Length = 469

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   V D+E+TG +   DR+ E+  V+     +  R  +     N +K  P+ +  L GI
Sbjct: 27  MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 82

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 83  SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 138

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 139 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 181


>gi|119900237|ref|YP_935450.1| putative DNA-directed polymerase III [Azoarcus sp. BH72]
 gi|119672650|emb|CAL96564.1| putative DNA-directed polymerase III [Azoarcus sp. BH72]
          Length = 474

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 83/161 (51%), Gaps = 9/161 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R ++ D+ETTG     DRI EI A+  ++  +  + ++  + P G    P    + GI D
Sbjct: 6   RYVLVDLETTGAHPLRDRITEI-AILRIERGQLVQRWESLINP-GVPIPPTIQGVTGIDD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P F+++        +  +  ++AHNA+FD GF+      + ++   P  ++ T+
Sbjct: 64  TMVAGAPDFAAVADTVAALLD--DCVFVAHNARFDYGFLKTAYAALGREFDAP--VLCTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            ++R  +P   R+ L+++ +R+G+     ++H A+ D+ +L
Sbjct: 120 KLSRALYPDHHRHGLDAIIERHGLACG--ARHRAMGDTEVL 158


>gi|325136504|gb|EGC59108.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M0579]
          Length = 469

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   V D+E+TG +   DR+ E+  V+     +  R  +     N +K  P+ +  L GI
Sbjct: 27  MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 82

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 83  SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 138

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 139 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 181


>gi|218768453|ref|YP_002342965.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491]
 gi|121052461|emb|CAM08798.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491]
          Length = 470

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   V D+E+TG +   DR+ E+  V+     +  R  +     N +K  P+ +  L GI
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 84  SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|254670274|emb|CBA05558.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria
           meningitidis alpha153]
          Length = 461

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   V D+E+TG +   DR+ E+  V+     +  R  +     N +K  P+ +  L GI
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 74

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 75  SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 131 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173


>gi|240143784|ref|ZP_04742385.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
 gi|257204219|gb|EEV02504.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
          Length = 228

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 5/170 (2%)

Query: 5   NKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + +KIVF D ETTGLD + D+IIE+ A  + +     +       P G K   + ++L 
Sbjct: 2   QQFKKIVFFDTETTGLDPEKDQIIELAAALVTENGIELKIDAFCKLPEGEKIPEKIVELT 61

Query: 64  GITDEFLKDKP-SFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            ITD+ L DK   +      F +  + +     +AHN +FD+ FI    +R    P  P 
Sbjct: 62  HITDDMLADKGIDYREACRIFCNMLHSDSEVLLVAHNIQFDLLFILEMFKRCGMVPKAPK 121

Query: 122 -RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            R +D+L++ + +        N++ + YG+    ++ H A+ D   L +V
Sbjct: 122 LRALDSLTVYKDRAAYPHKLANAI-EHYGLADKVQNSHRAIDDVLALYEV 170


>gi|228996755|ref|ZP_04156392.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
           Rock3-17]
 gi|228763074|gb|EEM11984.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
           Rock3-17]
          Length = 930

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  DRI +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDRITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A +IAHN  FD  F+  EL++     ++  + ID
Sbjct: 62  DENLVKQAPLFCDVAPMVAELL--QGAYFIAHNVHFDWNFLKEELKQAGYGEVNCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+ + ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALVTAELFLQFL 167


>gi|121607002|ref|YP_984331.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
 gi|120595971|gb|ABM39410.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
          Length = 203

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 11/159 (6%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D ETTG+     DR  E+ A+ LL+  +    FQ  +  N     P  + +L GIT+ 
Sbjct: 6   VIDFETTGISPGCGDRATEV-AIVLLEGGRVVDRFQSLM--NAGVRIPSFITQLTGITNA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  + + ++   F  +  A  +AHNA FD  F  AEL R       P   I TL 
Sbjct: 63  MVAGAPDAAQVMTQASRFVGD--APLVAHNAAFDRKFWQAELDRAGLA--APQPFICTLL 118

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHL 166
           ++RR +P + N  L SL   +G+  + ++ H AL D+ +
Sbjct: 119 LSRRLYPQAPNHKLGSLVDFHGLPRTGQA-HRALADAEM 156


>gi|261392288|emb|CAX49811.1| putative DnaQ-like exonuclease [Neisseria meningitidis 8013]
          Length = 470

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   V D+E+TG +   DR+ E+  V+     +  R  +     N +K  P+ +  L GI
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 84  SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|158316676|ref|YP_001509184.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec]
 gi|158112081|gb|ABW14278.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec]
          Length = 389

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 15/169 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL    DR++ +  V           +   L P      P  + +HG+T + L
Sbjct: 79  VVDVETTGLSPTRDRVLSVAVVLTAADGTVEHRWSTLLDPG---CDPGPVHIHGLTRQRL 135

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
              P+F+++  E       +    +AHNA FD   +  E  RI    P++  R+  TL++
Sbjct: 136 AGSPTFAAVADEVAGLLAGRV--LVAHNAAFDWRMLAGEAMRIGTTIPVE-WRLC-TLTL 191

Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A R   + PS R  L SL   +G+    R  H A  D+ +L+ +  +++
Sbjct: 192 ASRLGLELPSLR--LASLAAYWGVV--QRRAHDAQDDAEVLAALLPRIL 236


>gi|325130506|gb|EGC53261.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis OX99.30304]
          Length = 470

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   V D+E+TG +   DR+ E+  V+     +  R  +     N +K  P+ +  L GI
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 84  SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|308389143|gb|ADO31463.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           alpha710]
          Length = 461

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   V D+E+TG +   DR+ E+  V+     +  R  +     N +K  P+ +  L GI
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 74

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 75  SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 131 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173


>gi|294628658|ref|ZP_06707218.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
 gi|292831991|gb|EFF90340.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
          Length = 328

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 10/162 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRII      L    +    +   + P   +  P  + +HG+T E L
Sbjct: 25  VVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNP---ERDPGPVWIHGLTSEAL 80

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F+ I  EF     ++    +AHNA FD   I  E  R  ++     R+  T++++
Sbjct: 81  EGAPLFTDIAEEFAARLADRVL--VAHNAVFDWQMIAREYARARREAPVRQRLC-TIALS 137

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +    P   + L SL   +G+    R  H AL D+ +L++ +
Sbjct: 138 KELGLPLPNHKLESLAAHFGVV--QRRAHHALDDARVLAEAF 177


>gi|319410698|emb|CBY91078.1| putative DnaQ-like exonuclease [Neisseria meningitidis WUE 2594]
          Length = 461

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   V D+E+TG +   DR+ E+  V+     +  R  +     N +K  P+ +  L GI
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 74

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 75  SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 131 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173


>gi|315924662|ref|ZP_07920879.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621561|gb|EFV01525.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 178

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 25/182 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL------K 61
           R +VFD+ET   + +N R+  IG   + D   T+  + +         +PE        +
Sbjct: 3   RFVVFDVETP--NRENRRMSAIGITVIEDGKITDEFYSLV--------NPETYFDYFNTR 52

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLD 119
           L GI ++ + + P+F  ++       +  +   +AHNA FD+G +   L+  RI   P  
Sbjct: 53  LTGICEDAVWNAPTFPELWKTIAPMLS--SGLLVAHNAVFDMGVLKRCLRDYRIEWKP-- 108

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             R + T+ + RR  P   + LN LC  YGI ++H   H A  DS   + + ++ +  G+
Sbjct: 109 HVRYLCTVQMGRRIIPGMSHKLNVLCDYYGINLAH---HQAASDSRACAQILLRYLEVGA 165

Query: 180 QI 181
            +
Sbjct: 166 DV 167


>gi|124005083|ref|ZP_01689925.1| exonuclease [Microscilla marina ATCC 23134]
 gi|123989335|gb|EAY28896.1| exonuclease [Microscilla marina ATCC 23134]
          Length = 245

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ETTG D+ NDRI++I  ++L  D +K  +  +  + P      PE  K+HG++DE
Sbjct: 8   VFFDLETTGTDTLNDRIVQIAIIKLAADGTKVEK--ERLINPT-IPIPPEVTKVHGVSDE 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTL 127
            +KD P+F  +    ++F    +     H   FD+  +  E  R      +P  + ID +
Sbjct: 65  MVKDAPTFHQVAKSLFEFIRGCDLAGYNH-LNFDMPLLIEEFARAGVVFPEPDVQYIDVM 123

Query: 128 SIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVY 171
            +    HP + +    L C +        + H A+ D+    +++
Sbjct: 124 KVYYHFHPRTLSAAYQLYCHK-----ELENAHNAMADTQATLEIF 163


>gi|302546442|ref|ZP_07298784.1| putative DNA polymerase III epsilon subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464060|gb|EFL27153.1| putative DNA polymerase III epsilon subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 335

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 10/162 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRI+     +L         +   + P   +  P  + +HG+T E L
Sbjct: 28  VVDVETTGL-ARDDRIVSAAVYQLDARGAVQDRWYTLVNP---QRDPGPVWIHGLTRETL 83

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P F  I + F +  + +    +AHNA FD   I  E  R   +     R+  T++++
Sbjct: 84  SDAPLFPDIATAFAERLDGRV--LVAHNAAFDWSMIAREFARSKTEAPVRQRLC-TIALS 140

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +    P + + L +L   YG+ +  R+ H AL D+ +L++ +
Sbjct: 141 KELGLPLANHKLETLAAHYGV-VQERAHH-ALDDARVLAETF 180


>gi|302668948|ref|YP_003832773.1| exonuclease family protein [Butyrivibrio proteoclasticus B316]
 gi|302397288|gb|ADL36191.1| exonuclease family protein [Butyrivibrio proteoclasticus B316]
          Length = 302

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 21/221 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD---YSKTNRTFQVFLCPNGRKNSP 57
           ++R NK+  I++D ETTG   K   I++I A++L     Y   +   Q    P     + 
Sbjct: 25  VLRNNKVPIIIYDTETTGT-GKKAYIVQISALKLSPGNPYYIVDTLDQYIRPPIPMPAAA 83

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA--HNAKFDVGFINAELQRINK 115
            A+  + ITDEFL+DKPS     S   +FF + N   IA  ++  FD   +N   QR   
Sbjct: 84  SAV--NHITDEFLEDKPSEEIALSWIQNFFGDPNDSVIAGYNHISFDNKMMNNMYQRAAG 141

Query: 116 DPLDPSRIIDTLSIA-----RRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSD 169
              DP   +D L +A     R +    R  L S+ + YGI T   +  H A      ++D
Sbjct: 142 LTFDPKWNVDALVMARCLVDRNEITDGRFTLASIAETYGIKTDEDQQLHNA------MTD 195

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
           + + M V  + IN    +  ++ +  +  T P I +L   K
Sbjct: 196 IQVTMKVMWALINDYVDSGLEQVYLSQ-STKPIIQILGAPK 235


>gi|294811879|ref|ZP_06770522.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|326440385|ref|ZP_08215119.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|294324478|gb|EFG06121.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 334

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 10/162 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRI+      L    +    +   + P   +  P  + +HG+T + L
Sbjct: 22  VVDVETTGL-ARDDRIVSAAVYRLDARGEVEDHWYTLVNP---ERDPGPVWIHGLTSDVL 77

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P F  I  EF    + +    +AHNA FD   I  E  R  +      R+  T+++A
Sbjct: 78  AGAPLFQDIADEFSQRLDGRVL--VAHNAMFDWSMIAREYARARRTAPTRQRLC-TIALA 134

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +  + P   + L SL   +G+    R  H AL D+ +L++ +
Sbjct: 135 KELRLPLPNHKLESLAAHFGVV--QRQAHHALDDARVLAEAF 174


>gi|107028837|ref|YP_625932.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116690004|ref|YP_835627.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|105898001|gb|ABF80959.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116648093|gb|ABK08734.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
          Length = 212

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL     DR  EI  + L +    +R FQ  +   GR+   + + L GIT++ 
Sbjct: 13  VLDFETTGLSPNLGDRATEIAVILLRNGQVVDR-FQSLMN-AGRRIPSDVVALTGITNDM 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  S +  E   F  +     +AHNA FD  F  +EL  +            T+ +
Sbjct: 71  IATAPPASEVMKEAAAFVGKHAV--VAHNAGFDKRFWQSELGMLGMSA--DHAFACTMLV 126

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ARR +P +R+  L+SL +   +  + R+ H A++D+ +   ++ ++
Sbjct: 127 ARRIYPDARSHRLSSLAEMLRLPQTGRA-HRAMVDAEMAGHLWCRL 171


>gi|300776313|ref|ZP_07086171.1| exonuclease [Chryseobacterium gleum ATCC 35910]
 gi|300501823|gb|EFK32963.1| exonuclease [Chryseobacterium gleum ATCC 35910]
          Length = 254

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 71/128 (55%), Gaps = 8/128 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           +FD+ETTG +   DRI+EI  +++  D S+ ++T++V    N     P E  ++HGI DE
Sbjct: 11  IFDLETTGTNIGKDRIVEICILKVNPDASRESKTWRV----NPEMPIPKECSEIHGIYDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127
            +KD P+F  I ++  +  +  +      N +FDV  +  EL R+  D  L+  R++D  
Sbjct: 67  DVKDAPTFRDIAAKIMEMISGSDLGGFNSN-RFDVPLLAEELLRVGMDFDLNKFRLVDAQ 125

Query: 128 SIARRKHP 135
           +I  +K P
Sbjct: 126 TIFHKKEP 133


>gi|311742833|ref|ZP_07716641.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM
           15272]
 gi|311313513|gb|EFQ83422.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM
           15272]
          Length = 569

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 80/168 (47%), Gaps = 19/168 (11%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG    K  RI EIGAV L+   +    FQ  + P+  ++ P  +  L GITD+
Sbjct: 34  VVDLETTGGSPQKGSRITEIGAV-LVRGGEVLGEFQTLVNPD--ESIPAFITVLTGITDQ 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN---AELQRINKDPLDPSRIID 125
            +   P  +     F +F   + +  +AHNA FD GF+    AELQ     P     ++D
Sbjct: 91  MVVQAPRIAEALPSFLEF--ARGSVLVAHNAPFDTGFLRHAAAELQ----IPWPRFEVLD 144

Query: 126 TLSIARRKHPSS--RN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           T  +ARR   +   RN  L +L    G T +    H AL D+    DV
Sbjct: 145 TALLARRVLLAGEVRNCKLGTLAAHVGATTT--PNHRALSDARATVDV 190


>gi|205355328|ref|ZP_03222099.1| exonuclease possibly DNA polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346562|gb|EDZ33194.1| exonuclease possibly DNA polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 233

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 9/145 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           + DIE+TG  SK + I+EIGAV++ +  +  R FQ F+     K  PE + +L GIT E 
Sbjct: 51  IVDIESTGGVSKGE-ILEIGAVKIQNSKEIGR-FQSFV---KVKEIPENITELTGITYEM 105

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ PS + + S+F  F   +++ ++AHN +FD  FI+  L       L   RI  T+  
Sbjct: 106 VENAPSLTKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 162

Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154
           A+    S +  L  L +  G+  +H
Sbjct: 163 AQCCIESPKYKLEVLKEFLGVENTH 187


>gi|109897723|ref|YP_660978.1| ribonuclease T [Pseudoalteromonas atlantica T6c]
 gi|109700004|gb|ABG39924.1| RNAse T [Pseudoalteromonas atlantica T6c]
          Length = 211

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 20/196 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G +++ D ++E+ A+   +D   +   ++TF   + P  G      AL+ +G
Sbjct: 18  VIVDVETAGFNAQTDALLEVAAITTQMDADGFLTPDKTFHYHVVPFEGANLEKAALEFNG 77

Query: 65  I---------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113
           I          DE    K     I  E  D  + Q +  +AHNA FD+GFINA ++R  I
Sbjct: 78  IDPWCALRGALDETEVMKDLCKQIRKEQKDA-DCQRSVMVAHNAAFDLGFINAAIERSKI 136

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++       +  L   C+   I+      H AL D+   +++Y  
Sbjct: 137 KRTPFHPFVSFDTTTLSGLA--LGQTVLVKACQAANISFDQSEAHSALYDTQKTAELYC- 193

Query: 174 MMVGGSQINFGFKTNE 189
            +V   Q   G+ T E
Sbjct: 194 YIVNKWQSACGWPTPE 209


>gi|304373374|ref|YP_003856583.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
 gi|304309565|gb|ADM22045.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
          Length = 1457

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 7/171 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFD+ETTGL  K + +IE GAV   +     +    FL     K       L GIT+
Sbjct: 403 RYVVFDLETTGLSPKFNELIEFGAVVWQNGQILEK--HEFLIKPKEKIPSYISDLTGITN 460

Query: 68  EFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           + ++++  S      +    F  QN+  +AHNA+FD G +    + +    L+   +IDT
Sbjct: 461 QMIENEAISVEEAAIKIKQIF--QNSILVAHNARFDYGCLVEFFKELELYELEQP-VIDT 517

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           L ++R   P+  R++L  L K   I       H    D+ +L+ V+ + ++
Sbjct: 518 LEVSRFLAPTQKRHNLKELAKNASIHYDETESHRGGYDAEVLAKVWDQFLI 568


>gi|325068629|ref|ZP_08127302.1| hypothetical protein AoriK_12441 [Actinomyces oris K20]
          Length = 204

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 10/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG       + EIGAV++    +    F   + P G     +   L GIT+  
Sbjct: 23  VVVDLETTGGAPGARSLTEIGAVKV-RGGQVLAEFSTLVNP-GVAIPAQITLLTGITNAM 80

Query: 70  LKDKPSFSSIFSEFWDFFN--EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +   P   +    F D+ +    +   +AHNA+FDVG +      ++ +  +P R++DTL
Sbjct: 81  VAGAPGVRTCVEAFLDWADLLADDVVLVAHNARFDVGHLRGAAAALDLEWPEP-RVLDTL 139

Query: 128 SIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           ++AR+    S    + L +L    G  I  R  H AL D+    DV 
Sbjct: 140 ALARKAWTRSEVPNHKLGTLAAFVGSQI--RPTHRALDDARATVDVL 184


>gi|295398569|ref|ZP_06808601.1| possible DNA-directed DNA polymerase III epsilon subunit
           [Aerococcus viridans ATCC 11563]
 gi|294973170|gb|EFG48965.1| possible DNA-directed DNA polymerase III epsilon subunit
           [Aerococcus viridans ATCC 11563]
          Length = 957

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 9/161 (5%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG    N DRII+IG V  +   +    F   + PN ++   E  KL GIT+E 
Sbjct: 10  VLDLETTGSTYDNGDRIIQIG-VAFVQNGQVVDQFATDIFPN-QEIPREITKLTGITNEQ 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K  P F ++    W   +  N   +AHN  FD  F++   Q      +   R +DT+ +
Sbjct: 68  VKRAPKFEAVAEILWQKLS--NTVIVAHNIGFDYKFLDKSFQAHGYPAMTHDR-VDTVEM 124

Query: 130 ARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
            R   P++ +  L   C  +GI +  +H +   A+  +H+L
Sbjct: 125 VRTLFPTADSYKLGEFCLAHGIQLENAHTAIDDAVATAHIL 165


>gi|217970248|ref|YP_002355482.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|217507575|gb|ACK54586.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 203

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 11/161 (6%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D ETTGL  ++ DR  EI AV + D    +R +Q  +  N     P  ++ L GI++ 
Sbjct: 6   VIDFETTGLSPAQGDRATEIAAVIVRDGRVVDR-YQSLM--NAGVRIPAHIESLTGISNA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+ + +  E  DF        +AHNA FD  F +AEL RI +        + +L 
Sbjct: 63  MIRSAPTAAQVMREVADFIG--GIPMVAHNAAFDAKFWDAELARIERA--RKQDFVCSLL 118

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           ++RR  P +  + L +L +   + ++ R  H AL D+ + +
Sbjct: 119 LSRRLFPLAPSHRLGALVEYARLPVAGRF-HRALADAEMAA 158


>gi|332652795|ref|ZP_08418540.1| exonuclease [Ruminococcaceae bacterium D16]
 gi|332517941|gb|EGJ47544.1| exonuclease [Ruminococcaceae bacterium D16]
          Length = 195

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 10/181 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I FD+ET   +S NDRI  IG V +++           + P  R  S   + L GIT 
Sbjct: 4   RYIAFDVETP--NSANDRISAIG-VTVVERGAVVEQHDYLVNPETRFASFN-VALTGITP 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + DKP+F  ++ E    F+  +   IAHNA FD+  +   L+              T 
Sbjct: 60  EMVADKPAFPQLWQELEPIFD--SGLLIAHNAPFDMSVLAKCLRDYGIRWRPSVSYACTC 117

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            ++RR  P   N  LN+LC   G+ + H   H A  DS    ++ +  +  G+ +    +
Sbjct: 118 QMSRRLLPQLPNHKLNTLCDFLGLELDH---HRAGSDSLACGEILLHHLHSGADLTPFIR 174

Query: 187 T 187
           T
Sbjct: 175 T 175


>gi|284040095|ref|YP_003390025.1| DNA polymerase III subunit epsilon [Spirosoma linguale DSM 74]
 gi|283819388|gb|ADB41226.1| DNA polymerase III, epsilon subunit [Spirosoma linguale DSM 74]
          Length = 180

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTG      R+ EI A+   D  +   +F   L P G    P    L GI+DE +
Sbjct: 4   IVDVETTGGVKGPTRLTEI-AIFRHDGQQVVDSFHSLLNP-GCPIPPFIRHLTGISDEMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D P+F+ + ++  +    Q+A ++AHN  FD  FI  EL  +  D L   R + T+  +
Sbjct: 62  QDAPTFADVANDVLNI--TQDAIFVAHNVGFDFSFIQKELNWLGHDFL--RRTLCTVRTS 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK-HGALLDSHLLSDVYIK 173
           R+  P   +  L  LC+   I ++ R +  G    + LL ++ +K
Sbjct: 118 RKLLPGYPSYSLGKLCRSLEIPLNGRHRAQGDAAATVLLFEMLLK 162


>gi|229160592|ref|ZP_04288587.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           R309803]
 gi|228623002|gb|EEK79833.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           R309803]
          Length = 933

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|148925831|ref|ZP_01809518.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844817|gb|EDK21921.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 256

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 9/145 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           + DIE+TG  SK + I+EIGAV++ +  +  R FQ F+     K  PE + +L GIT E 
Sbjct: 74  IVDIESTGSVSKGE-ILEIGAVKIQNSKEIGR-FQSFV---KVKEIPENITELTGITYEM 128

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ PS + + S+F  F   +++ ++AHN +FD  FI+  L       L   RI  T+  
Sbjct: 129 VENAPSLTKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 185

Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154
           A+    S +  L  L +  G+  +H
Sbjct: 186 AQCCIESPKYKLEVLKEFLGVENTH 210


>gi|238018443|ref|ZP_04598869.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748]
 gi|237864914|gb|EEP66204.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748]
          Length = 862

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 6/164 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+E+TG D+  DRII+I A+ + +  +   TF+ F+ P       E  ++HG +D +
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLETFERFINPGVPVGQSE--EVHGFSDAY 552

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LK+     +I  + +  F+ +NA  + HN  +DV     EL R N    +   I DTL I
Sbjct: 553 LKEHGEEPAIVLQAFKEFS-KNAIIVGHNVNYDVTIFTNELARHNLGNPEFKAIYDTLDI 611

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            RR +P+  N  L  L   +   I+H   H A+ D    S + I
Sbjct: 612 YRRFYPNLPNHKLGFLASEF--PINHEPTHNAMDDILATSQLLI 653


>gi|229126955|ref|ZP_04255966.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-Cer4]
 gi|228656555|gb|EEL12382.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-Cer4]
          Length = 934

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|238810189|dbj|BAH69979.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 1467

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 16/173 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDE 68
           + FDIETTGL  +   IIE G++ +    K  R  Q F+ C    K  P    L GIT+ 
Sbjct: 433 VSFDIETTGLCPRFAVIIEYGSLPIHSNMKYGRKTQFFIKCQEPIK--PFTENLTGITNA 490

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            ++   S   +       +N+ N +  +AHNA+FD  F+  +  R  K       +IDTL
Sbjct: 491 MIEK--SGLELKEALQKIYNDLNGKIALAHNARFDFNFLKEKF-RQAKIEFPNVTVIDTL 547

Query: 128 SIARRKHPSS-RNDLNSLCKRYGI----TISHRSKHGALLDSHLLSDVYIKMM 175
            ++R   P + ++ L  +  R G+    T++HR  +    D+ +L++V++ +M
Sbjct: 548 IVSRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDY----DAKVLAEVWVALM 596


>gi|228938753|ref|ZP_04101356.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228971635|ref|ZP_04132257.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228978244|ref|ZP_04138621.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis Bt407]
 gi|228781261|gb|EEM29462.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis Bt407]
 gi|228788048|gb|EEM36005.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228820928|gb|EEM66950.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326939259|gb|AEA15155.1| ATP-dependent helicase DinG [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 934

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|317126517|ref|YP_004100629.1| exonuclease RNase T and DNA polymerase III [Intrasporangium calvum
           DSM 43043]
 gi|315590605|gb|ADU49902.1| Exonuclease RNase T and DNA polymerase III [Intrasporangium calvum
           DSM 43043]
          Length = 228

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 21/190 (11%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +R +  D+ETTGLD + D I+ +G V     ++D S   +     LC     +  ++  +
Sbjct: 42  LRLLAVDLETTGLDPRTDHILTVGFVPVDGLVIDLSGATQ----LLC-RAEGDVGQSAVV 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGITD+ L      + +          +    +AH+A  +  F+ A  +R +  PL P  
Sbjct: 97  HGITDDALAGGLPLADVVDRVAAALRGRV--LLAHHAVIEREFLAAACERTHGVPL-PME 153

Query: 123 IIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHR-----SKHGALLDSHLLSDVYIKMMV 176
            +DT+ + AR     S  DL     R G   +H      + H AL D+   +++Y+  + 
Sbjct: 154 AVDTMQLQARVLGSQSGADLPPGALRLGTARAHLGLPRYAAHQALTDALACAELYLAQVA 213

Query: 177 ---GGSQINF 183
              GG  ++ 
Sbjct: 214 RLSGGQPMSL 223


>gi|229144240|ref|ZP_04272654.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST24]
 gi|228639248|gb|EEK95664.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST24]
          Length = 934

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|152993730|ref|YP_001359451.1| DNA polymerase III subunit epsilon [Sulfurovum sp. NBC37-1]
 gi|151425591|dbj|BAF73094.1| DNA polymerase III, epsilon subunit [Sulfurovum sp. NBC37-1]
          Length = 272

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 10/166 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLH 63
            + R  V DIET G      ++IEIGAV +      +R      C       PE + K+ 
Sbjct: 70  QEQRYCVIDIETNGSKPGTSQVIEIGAVMVEKGEIVDRLETFVECAF----LPEYITKIT 125

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI    LKD P+  +  ++   F    +A ++AHNA FD  F+ A  +R     +   ++
Sbjct: 126 GIEPIDLKDAPTRRAALTQLRQFMG--DAVFVAHNANFDYSFLTASFERFGLGGIGNPKL 183

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHLL 167
             T+ +A+R   S R  L  L    GI  +  HR+   AL    ++
Sbjct: 184 C-TIDLAKRTFESERYGLAYLIDFLGIETATHHRAYSDALCAEKVM 228


>gi|310828723|ref|YP_003961080.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612]
 gi|308740457|gb|ADO38117.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612]
          Length = 461

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 8/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+ETTGLD  N+ IIEIGA+++ D      +F+ F+ P     S +   + GIT+  
Sbjct: 147 VMVDVETTGLDPSNNEIIEIGALKITD-GNVIDSFKTFVKPINSIPS-KITSITGITNNM 204

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDPSRIIDTL 127
           + D PS  ++  EF  F ++     + +N  FD+ F++    +   N D L     ID L
Sbjct: 205 VADAPSIKTVLMEFKSFLSDN--YIVGYNVLFDIKFLHDSYYKNFGNCDWLSHDY-IDVL 261

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              R+   S+ N   +    Y + I  +  H AL D +   + Y
Sbjct: 262 RFCRKYFKSAPNHKLTTMIDY-LNIDVKEHHRALADCYATLECY 304


>gi|228952021|ref|ZP_04114116.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228957917|ref|ZP_04119657.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228801833|gb|EEM48710.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228807553|gb|EEM54077.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 934

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|224417820|ref|ZP_03655826.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|253827160|ref|ZP_04870045.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|313141361|ref|ZP_07803554.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|253510566|gb|EES89225.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|313130392|gb|EFR48009.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
          Length = 247

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEAL-KLHGI 65
           R  + DIET G +    + IEIGA+ +    K   +F  F+ C    +  PE + KL GI
Sbjct: 70  RFCIVDIETNGHNPFVHQPIEIGAI-VYQGGKICESFHSFVFC----EEIPEYITKLTGI 124

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   L+  P    +   F  F +  +  ++AHN  FD  F++  L       L   R+  
Sbjct: 125 TSPMLEKAPKIHQVLESFKLFLS--DCVFVAHNVNFDYQFLSNALYHYGFGYLYNPRLC- 181

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           T+ +A++   S R  L  L +  G  I H   H AL DS + S+V+ K ++G
Sbjct: 182 TIKLAQKTFTSPRYSLEFLNEFLG--IRHSPLHRALEDSKVASEVFKKSLMG 231


>gi|206970727|ref|ZP_03231679.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH1134]
 gi|229078824|ref|ZP_04211377.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock4-2]
 gi|229178049|ref|ZP_04305421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           172560W]
 gi|206734363|gb|EDZ51533.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH1134]
 gi|228605537|gb|EEK62986.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           172560W]
 gi|228704506|gb|EEL56939.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock4-2]
          Length = 934

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|218230901|ref|YP_002366323.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus B4264]
 gi|228907275|ref|ZP_04071134.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 200]
 gi|229069194|ref|ZP_04202485.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           F65185]
 gi|218158858|gb|ACK58850.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus B4264]
 gi|228713946|gb|EEL65830.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           F65185]
 gi|228852329|gb|EEM97124.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 200]
          Length = 934

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|330989528|gb|EGH87631.1| ribonuclease T [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 225

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV + +D   +     T+   + P  G    P AL+  G
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFEGANVEPAALEFTG 92

Query: 65  I-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114
           I  D  L+    ++ + + IF            + A  + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  +
Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 210

Query: 175 M 175
           +
Sbjct: 211 V 211


>gi|320531410|ref|ZP_08032377.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320136382|gb|EFW28363.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 299

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG       + EIGAV++    +    F   + P G     +   L GIT+  
Sbjct: 23  VVVDLETTGGAPGARSLTEIGAVKVRG-GQVLADFSTLVNP-GVAIPAQITMLTGITNAM 80

Query: 70  LKDKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +   P  S+    F  W      +   +AHNA+FDVG +      +  +  +P R++DTL
Sbjct: 81  VAGAPGVSTCVEAFLSWADLLADDVVLVAHNARFDVGHLRGAAAALGLEWPEP-RVLDTL 139

Query: 128 SIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++AR+    S    + L +L    G     R  H AL D+    DV
Sbjct: 140 ALARKAWTRSEVPNHKLGTLAAFVG--SRTRPSHRALDDARATVDV 183


>gi|57237506|ref|YP_178520.1| DNA polymerase III subunit epsilon [Campylobacter jejuni RM1221]
 gi|57166310|gb|AAW35089.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Campylobacter jejuni RM1221]
          Length = 233

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 9/145 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           + DIE+TG  SK + I+EIGAV++ +  +  R FQ F+     K  PE + +L GIT E 
Sbjct: 51  IVDIESTGGVSKGE-ILEIGAVKIQNSKEIGR-FQSFV---KVKEIPENITELTGITYEM 105

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ PS + + S+F  F   +++ ++AHN +FD  FI+  L       L   RI  T+  
Sbjct: 106 VENAPSLTKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 162

Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154
           A+    S +  L  L +  G+  +H
Sbjct: 163 AQCCIESPKYKLEVLKEFLGVENTH 187


>gi|296502210|ref|YP_003663910.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171]
 gi|296323262|gb|ADH06190.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171]
          Length = 934

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|229189723|ref|ZP_04316737.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           10876]
 gi|228593772|gb|EEK51577.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           10876]
          Length = 934

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|15835150|ref|NP_296909.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
 gi|270285322|ref|ZP_06194716.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
 gi|270289339|ref|ZP_06195641.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss]
 gi|301336719|ref|ZP_07224921.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14]
 gi|8163241|gb|AAF73567.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum
           Nigg]
          Length = 232

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 76/169 (44%), Gaps = 10/169 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG     DRI+EI A        T  +FQ  + P     + EA K+HGIT   
Sbjct: 5   IFYDTETTGTQIDKDRIVEIAAYN----GTTGESFQTLVNPEIPIPA-EATKIHGITTSE 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P F   + +F DF    N     +N  FD   +  E +R +  P    R ID+L  
Sbjct: 60  VANAPKFPEAYQQFSDFCGTDNILVAHNNNAFDYPLLLRECRR-HGLPEPQLRTIDSLKW 118

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           A++      ++ L  L + YG      + H AL D   L  V+  ++VG
Sbjct: 119 AKKYRTDLPQHSLQYLRQVYG--FEENNAHRALDDVITLHRVF-SVLVG 164


>gi|229043387|ref|ZP_04191104.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH676]
 gi|228725968|gb|EEL77208.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH676]
          Length = 934

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVEMAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|218896571|ref|YP_002444982.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus G9842]
 gi|218545327|gb|ACK97721.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus G9842]
          Length = 934

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|295703510|ref|YP_003596585.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium
           DSM 319]
 gi|294801169|gb|ADF38235.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           megaterium DSM 319]
          Length = 933

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 7/164 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D+ETTG   K  D++I+  AV + D  K    F  FL P G    P   +L  I 
Sbjct: 4   RFVVVDLETTGHSPKQGDKMIQFAAVIVED-GKIVERFSSFLNP-GMDIPPFITQLTNIQ 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ +K  P F  I  +  +  +  +A ++AHN  FD+ F+  EL +  ++ L  S  +DT
Sbjct: 62  NDMVKGAPLFEEISPKIIELLD--DAYFVAHNVAFDLTFLQEELYQCGRETLYNST-VDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +AR   P+      S    Y + I H + H A  D+ + + +
Sbjct: 119 VELARILLPTVDGYKLSQLAEY-LHIEHENPHQADSDAEVTARI 161


>gi|258422513|ref|ZP_05685421.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9635]
 gi|257847270|gb|EEV71276.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9635]
          Length = 897

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +     +  P    L  I ++
Sbjct: 8   VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEK 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           I +   P+ ++  L+ L + +GIT+  +HR+   A   + L+
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162


>gi|228920352|ref|ZP_04083698.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228839274|gb|EEM84569.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 934

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|228990657|ref|ZP_04150622.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           pseudomycoides DSM 12442]
 gi|228769183|gb|EEM17781.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           pseudomycoides DSM 12442]
          Length = 930

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  DRI +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDRITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     ++  + ID
Sbjct: 62  DENLVKQAPLFCDVAPMVAELL--QGAYFVAHNVHFDWNFLKEELKQAGYGEVNCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+ + ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALVTAELFLQFL 167


>gi|319777750|ref|YP_004137401.1| DNA polymerase iii alpha subunit [Mycoplasma fermentans M64]
 gi|318038825|gb|ADV35024.1| DNA polymerase III alpha subunit [Mycoplasma fermentans M64]
          Length = 1461

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 16/173 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDE 68
           + FDIETTGL  +   IIE G++ +    K  R  Q F+ C    K  P    L GIT+ 
Sbjct: 427 VSFDIETTGLCPRFAVIIEYGSLPIHSNMKYGRKTQFFIKCQEPIK--PFTENLTGITNA 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            ++   S   +       +N+ N +  +AHNA+FD  F+  +  R  K       +IDTL
Sbjct: 485 MIEK--SGLELKEALQKIYNDLNGKIALAHNARFDFNFLKEKF-RQAKIEFPNVTVIDTL 541

Query: 128 SIARRKHPSS-RNDLNSLCKRYGI----TISHRSKHGALLDSHLLSDVYIKMM 175
            ++R   P + ++ L  +  R G+    T++HR  +    D+ +L++V++ +M
Sbjct: 542 IVSRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDY----DAKVLAEVWVALM 590


>gi|228900222|ref|ZP_04064453.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 4222]
 gi|228859391|gb|EEN03820.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 4222]
          Length = 934

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|75760399|ref|ZP_00740443.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492110|gb|EAO55282.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 934

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|325571052|ref|ZP_08146624.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC
           12755]
 gi|325156137|gb|EGC68323.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC
           12755]
          Length = 918

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG DS  DRII+ G V + D    NR F   + P+ R+ S +  +L  IT++ +
Sbjct: 7   VVDLETTGTDSTIDRIIQFGCVLVQDGKIINR-FAADINPD-RRISKQIQRLTHITNQQV 64

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
              P F  +    ++  +  N  ++AHN  FD  F++ E  R    PL  P   IDT+ +
Sbjct: 65  SKAPYFEDVADTIYNLLS--NTIFVAHNIYFDYHFLSNEFVRCGLPPLSLPG--IDTVEL 120

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           A+   P+ S   L  L    G    H + H A  D+ + + +++
Sbjct: 121 AQVFLPTESSFRLGDLADSIG--FRHDNPHQADSDAEVTAALFL 162


>gi|315057872|gb|ADT72201.1| Exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 256

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 9/145 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           + DIE+TG  SK + I+EIGAV++ +  +  R FQ F+     K  PE + +L GIT E 
Sbjct: 74  IVDIESTGGVSKGE-ILEIGAVKIQNSKEIGR-FQSFV---KVKEIPENITELTGITYEM 128

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ PS + + S+F  F   +++ ++AHN +FD  FI+  L       L   RI  T+  
Sbjct: 129 VENAPSLTKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 185

Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154
           A+    S +  L  L +  G+  +H
Sbjct: 186 AQCCIESPKYKLEVLKEFLGVENTH 210


>gi|218291538|ref|ZP_03495419.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238658|gb|EED05882.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 240

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 99/237 (41%), Gaps = 15/237 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++ +  R +V D ETTGL  +  R++E+  VE+    +    +   + P G    PEA  
Sbjct: 1   MKLSDARFVVVDTETTGLPPEG-RVVELALVEVGLEREPQIVYSALVDP-GCPIPPEASA 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H ITD  +  KP  S ++ +   +    +A  +AHNA+FD G     L    +  L   
Sbjct: 59  VHHITDRDVAGKPRMSQVWPKVLGYIG--DAVLVAHNAEFDRGM----LPETGRPWLCSK 112

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           R++  L       P +    N + + + GI +     H AL D+ + + V+ + +    +
Sbjct: 113 RLVQHL------WPDAPKHANQVLRYWLGIDVEVGQPHRALGDALVTAHVFQRELRAYLE 166

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
             +    +E   F E    V  +   K        +  + LD   + +Q L  +  W
Sbjct: 167 AGYPDDVDELTAFAESPIEVQTMPFGKHKGMPLKEVPLDYLDWALRNLQDLSPDLRW 223


>gi|260769062|ref|ZP_05877996.1| ribonuclease T [Vibrio furnissii CIP 102972]
 gi|260617092|gb|EEX42277.1| ribonuclease T [Vibrio furnissii CIP 102972]
 gi|315180803|gb|ADT87717.1| ribonuclease T [Vibrio furnissii NCTC 11218]
          Length = 219

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++EI AV L +D +       T    + P  G      AL+ +G
Sbjct: 20  VVIDVETAGFNPQTDALLEICAVTLAMDENGDLHPASTIHFHVEPFEGANLEKAALEFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFW-DFFNEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD GF+ A  +R  +
Sbjct: 80  IYDPFSPLRGAVSEEHALKEIYKQVRKEQKAADCSRAIIVAHNAAFDHGFVMAASERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++   +   +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMAFDNREAHSALYDTQQTAELFCG 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|228964616|ref|ZP_04125724.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228795047|gb|EEM42545.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 365

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|157414745|ref|YP_001482001.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157385709|gb|ABV52024.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747384|gb|ADN90654.1| DNA polymerase III, epsilon subunit [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931109|gb|EFV10083.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni 327]
          Length = 253

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 9/145 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           + DIE+TG  SK + I+EIGAV++ +  +  R FQ F+     K  PE + +L GIT E 
Sbjct: 74  IVDIESTGGVSKGE-ILEIGAVKIQNSKEIGR-FQSFV---KVKEIPENITELTGITYEM 128

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ PS + + S+F  F   +++ ++AHN +FD  FI+  L       L   RI  T+  
Sbjct: 129 VENAPSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 185

Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154
           A+    S +  L  L +  G+  +H
Sbjct: 186 AQCCIESPKYKLEVLKEFLGVENTH 210


>gi|301058175|ref|ZP_07199227.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [delta proteobacterium NaphS2]
 gi|300447807|gb|EFK11520.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [delta proteobacterium NaphS2]
          Length = 233

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 7/124 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD E TGL  + D II IGAV + +       TF   + P G+  +P  L +H IT  
Sbjct: 43  VVFDTELTGLKQRRDEIIAIGAVRIKNARICFEDTFYALIKPQGKLYTPSTL-IHRITPG 101

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L+       +   F DF     A  + H+   D+GF+N   Q      +  PS  +DTL
Sbjct: 102 ELRGAEPIEEVLPRFIDFCG--GAFLVGHHVSLDLGFVNRACQNYLGGVIKSPS--LDTL 157

Query: 128 SIAR 131
            +AR
Sbjct: 158 RLAR 161


>gi|21224413|ref|NP_630192.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)]
 gi|13276811|emb|CAC33929.1| putative DNA polymerase [Streptomyces coelicolor A3(2)]
          Length = 244

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 25/159 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD+ETTG D +  RI+    +E+       R  + +L   G +   +A+ +HGI++E 
Sbjct: 9   IGFDLETTGTDPREARIVTGAVIEVRGSEPLGR--REWLADPGVEIPADAVAVHGISNER 66

Query: 70  L--KDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---- 117
              + +P      + +++  + W    +     +A+NA FD+  + AEL+R +  P    
Sbjct: 67  AAREGRPADQVADAIATVLVDHW----KAGVPVVAYNAAFDLTLLAAELRR-HALPSLRE 121

Query: 118 ----LDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGI 150
               LDP+ +ID  +I R   ++   + +L ++C+ YG+
Sbjct: 122 RLGGLDPAPVIDPYTIDRSVDRYRRGKRNLEAVCREYGV 160


>gi|320528160|ref|ZP_08029325.1| DNA polymerase III subunit epsilon domain protein [Solobacterium
           moorei F0204]
 gi|320131508|gb|EFW24073.1| DNA polymerase III subunit epsilon domain protein [Solobacterium
           moorei F0204]
          Length = 186

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 7/121 (5%)

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           SP  +++HGIT   +K  P+FS I+SE   +F  ++A  +AHNA+FD+  +        K
Sbjct: 50  SPYNIRIHGITARDVKGAPTFSEIYSELTGYF--EDAVIVAHNARFDMSCLKQTCLNTGK 107

Query: 116 DPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +      DT+ + +R   +   + LN +C+  GI + H   H AL D++   ++ + +
Sbjct: 108 -KIPVLEYFDTVELCKRVFSNLEHHRLNDVCEYIGIELDH---HNALSDANGCLEIVMAV 163

Query: 175 M 175
           M
Sbjct: 164 M 164


>gi|313672733|ref|YP_004050844.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939489|gb|ADR18681.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 195

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 8/169 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITD 67
           IV D+ETTG+   K  +I+EI A+++    K N     +   N     P  A ++H I++
Sbjct: 12  IVIDLETTGISPYKGAKIVEIAALKIEKGLKINPKNSFYSLVNPLIPIPYSAYRVHKISN 71

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +KD P+   +  +F +F +      I  N  FD  FI      +    L    IIDT+
Sbjct: 72  EIVKDYPTIEKVLPKFLEFLD--TPFIIGQNISFDYSFIKY-FSDLYNFRLKEFIIIDTI 128

Query: 128 SIARRKHPS-SRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIK 173
           +IA++  P+  R +L++L   +GI   + +  +H A  D +  + ++IK
Sbjct: 129 NIAKKIAPNLKRYNLDNLITYFGIENILGNGKRHRADFDIYATALIFIK 177


>gi|326790794|ref|YP_004308615.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM
           5427]
 gi|326541558|gb|ADZ83417.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM
           5427]
          Length = 237

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 14/165 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +V DIETTG       IIEIGAV  ++  +  + F   + P  +  S   + + GIT+
Sbjct: 3   KYVVVDIETTGAHPVQSEIIEIGAV-YIEEGQVKKIFNELVRPT-QIISDYIISITGITN 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRI-ID 125
           E + D P    +   F DF   ++   I HN   FD   +  +   +        ++ +D
Sbjct: 61  EMVADAPPIEEVMPRFIDFC--EDVPLIGHNIILFDYRMLKTKATALG---FTFEKMGVD 115

Query: 126 TLSIARR--KHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHL 166
           TL I+R+   H  SR  L  LC+ Y I++  +HR+ H A     L
Sbjct: 116 TLVISRKMLAHLPSRK-LGDLCEHYAISLENAHRAYHDAFATYEL 159


>gi|307330749|ref|ZP_07609886.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306883641|gb|EFN14690.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 328

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 10/162 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRI+     +L         +   + P   +  P  + +HG+T+E L
Sbjct: 28  VVDVETTGL-ARDDRIVSAAVYQLDARGAVQDHWYTLVNP---QRDPGPVWIHGLTEEVL 83

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  I  E  +   ++    +AHNA FD   +  E  R +K      + + T++++
Sbjct: 84  EGAPRFPEIAGELAERLADRVL--VAHNAAFDWSMLAREYAR-SKSAAPVRQRLCTIALS 140

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +    P   + L +L   YG+    R  H AL D+ +L++ +
Sbjct: 141 KELGLPLPNHKLETLAAHYGVV--QRRAHHALDDARVLAETF 180


>gi|300904709|ref|ZP_07122542.1| exonuclease [Escherichia coli MS 84-1]
 gi|301304416|ref|ZP_07210528.1| exonuclease [Escherichia coli MS 124-1]
 gi|300403376|gb|EFJ86914.1| exonuclease [Escherichia coli MS 84-1]
 gi|300840267|gb|EFK68027.1| exonuclease [Escherichia coli MS 124-1]
 gi|315257344|gb|EFU37312.1| exonuclease [Escherichia coli MS 85-1]
          Length = 220

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N   Q  L    R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSQ--LVRPDRPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|270290279|ref|ZP_06196504.1| DnaQ family exonuclease/DinG family helicase [Pediococcus
           acidilactici 7_4]
 gi|270281060|gb|EFA26893.1| DnaQ family exonuclease/DinG family helicase [Pediococcus
           acidilactici 7_4]
          Length = 927

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 9/178 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLH 63
           K R  V D+ETTG  S +  RII+IG    ++  +   T+Q  + P  +   P+ + +L 
Sbjct: 3   KTRYAVVDLETTGTGSVEESRIIQIGCA-FIEGDQITETYQTKINP--QMTIPKRISRLT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD+ ++  P F+ +  + +         ++AHN  FD  F+N EL R     LD  + 
Sbjct: 60  GITDQQVRQAPKFADVADKIYQKL--AGTVFVAHNVNFDFPFLNRELVRSGYPELD-LKA 116

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           IDT+++++     +R         Y + I H   H A  D+   + +++K+    S++
Sbjct: 117 IDTVTLSQVLFSRTRGYRLRDLTNY-LHIEHDDPHSADSDAVATAHLFLKIKAALSEL 173


>gi|197121230|ref|YP_002133181.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K]
 gi|196171079|gb|ACG72052.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K]
          Length = 206

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 15/175 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEF 69
            D+ET GLD + D I+ +G V + L   +   +F   + P       P +++ H +    
Sbjct: 22  LDLETGGLDPRRDAILAVGMVPVRLGSVRLGESFSTLIRPEATAAIDPGSIRAHQLVPHD 81

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   PS  S+ ++  D    + A  + H A  DV F+    QR  +   DP  ++DT+++
Sbjct: 82  VASAPSLDSVLADV-DVRAREGA-LLVHQASLDVAFLKRAYQRCGRRWPDPP-VVDTVAL 138

Query: 130 ----ARRKH------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               A+R+       P+   +LN L  R    +    +H AL D+   +++++ +
Sbjct: 139 LIKAAKRQRFVDPDAPAIEPELNLLAARRRRGLPDYGQHDALTDAVATAELFLVL 193


>gi|297198375|ref|ZP_06915772.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
 gi|197714433|gb|EDY58467.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
          Length = 241

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 13/154 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D + DRI+   AV + D + T      +L   G      A  +HG+T+E L
Sbjct: 11  AFDTETTGVDVETDRIVS-AAVVVQDAAGTRPRVSRWLVNPGVPVPAGATAVHGLTEEHL 69

Query: 71  KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLD------P 120
           +    + + +  E  +   EQ A     +  NA FD+  ++ EL+R     LD      P
Sbjct: 70  QRNGRWPAPVMFEIAETLAEQAAAGRPLVVMNAPFDLTVLDRELRRHRASSLDRWLDSSP 129

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
             ++D   + +   ++   R  L  LC+ YG+T+
Sbjct: 130 LLVLDPRVLDKHLDRYRKGRRTLTDLCEHYGVTL 163


>gi|110805789|ref|YP_689309.1| exodeoxyribonuclease X [Shigella flexneri 5 str. 8401]
 gi|110615337|gb|ABF04004.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 220

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K      + + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSLLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRCVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|268601098|ref|ZP_06135265.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18]
 gi|268585229|gb|EEZ49905.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18]
          Length = 264

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           M   V D+E+TG +   DR+ E+  V+          + V    N +K  P+   +L GI
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPQFVAELTGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 84  SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 140 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182


>gi|229012784|ref|ZP_04169953.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048]
 gi|228748465|gb|EEL98321.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048]
          Length = 318

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 86/167 (51%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P    + P+ +  L GIT+ 
Sbjct: 14  VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNP--ELSIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   + +IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 127

Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 128 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170


>gi|86157195|ref|YP_463980.1| exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773706|gb|ABC80543.1| Exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 207

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 16/176 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNS--PEALKLHGITDE 68
            D+ET GLD + D I+ +G V +   S +   +F   + P     +  P +++ H +   
Sbjct: 22  LDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFSTLIRPEAAAAAIDPGSIRAHQLVPH 81

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   PS  S+ ++  D    + A  + H A  DV F+    +R  +   +P  ++DT++
Sbjct: 82  DVATAPSLDSVLADV-DLRAREGA-LLVHQASLDVAFLKRAYRRCGRRWPEPP-VVDTVA 138

Query: 129 I----ARRKH------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +    A+R+       PS   DLN L  R    +    +H AL D+   +++++ +
Sbjct: 139 LLIKAAKRQRFVNPDAPSMEPDLNLLAARRQRGLPDYGQHDALTDAVATAELFLVL 194


>gi|313681496|ref|YP_004059234.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154356|gb|ADR33034.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 267

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 9/163 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+E+ G    + +IIEIGAV+L +    +    +  C +    S +  ++ GI  E  
Sbjct: 67  IVDVESNGSKPAHHQIIEIGAVKLQNGKIIDTYESLVYCTD---ISDQIQEITGIKTEQT 123

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P+ S +  EF  F    +A ++ H+AKFD  F++A ++R+    L  +R + T+ +A
Sbjct: 124 LKAPAMSKVMREFRLFLG--DAIFVGHDAKFDYNFVSAMMERVGLSKL-LNRSLCTIDLA 180

Query: 131 RRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            R   S R     LN+  + Y     HR+   A+  + LL  V
Sbjct: 181 ERTIESERYGLAYLNTALELYKEATHHRALSDAMTTTKLLKRV 223


>gi|304384907|ref|ZP_07367253.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
 gi|304329101|gb|EFL96321.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 927

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 9/178 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLH 63
           K R  V D+ETTG  S +  RII+IG    ++  +   T+Q  + P  +   P+ + +L 
Sbjct: 3   KTRYAVVDLETTGTGSVEESRIIQIGCA-FIEGDQITETYQTKINP--QMTIPKRISRLT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD+ ++  P F+ +  + +         ++AHN  FD  F+N EL R     LD  + 
Sbjct: 60  GITDQQVRQAPKFADVADKIYQKL--AGTVFVAHNVNFDFPFLNRELVRSGYPELD-LKA 116

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           IDT+++++     +R         Y + I H   H A  D+   + +++K+    S++
Sbjct: 117 IDTVTLSQVLFSRTRGYRLRDLTNY-LHIEHDDPHSADSDAVATAHLFLKIKAALSEL 173


>gi|261417986|ref|YP_003251668.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus sp. Y412MC61]
 gi|319767201|ref|YP_004132702.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y412MC52]
 gi|261374443|gb|ACX77186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y412MC61]
 gi|317112067|gb|ADU94559.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y412MC52]
          Length = 909

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 15/173 (8%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---KLH 63
           R ++ D+ETTG    K DRII++G   + D     R F  F  P      P  L   +L 
Sbjct: 4   RFVIIDLETTGNGPKKGDRIIQLGMAVVEDGLIVER-FASFFNPE----QPIPLFIQQLT 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I ++ ++  P F+    E     +   A ++AHN  FD+ F+ AEL+R    P      
Sbjct: 59  NINEQMVEGAPLFADKAGEIAALMH--GAYFVAHNVDFDLPFLQAELERAGWPPF-AGPT 115

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IDT+ +AR   P++ +  L  L ++ G  + H   H A  D+ + + ++I ++
Sbjct: 116 IDTVELARIVLPTAESYKLGDLARQLG--LRHDRPHQADSDAEVTAKLFIALL 166


>gi|237731882|ref|ZP_04562363.1| exodeoxyribonuclease X [Citrobacter sp. 30_2]
 gi|226907421|gb|EEH93339.1| exodeoxyribonuclease X [Citrobacter sp. 30_2]
          Length = 226

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 26/179 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +++ M +I+ D ET GL      I+EI +V+++D  K        + P+ R  SP+A+
Sbjct: 1   MGQEHGMLRII-DTETCGLQGG---IVEIASVDVVD-GKIVNPMSHLVRPD-RPISPQAM 54

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLD 119
            +H IT+  + DKP    +  +++       +EW +AHNA FD        +R+  D   
Sbjct: 55  AIHRITEAMVADKPWIEDVIPQYY------GSEWYVAHNASFD--------RRVLPD--M 98

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           P   I T+ ++RR  P  +    +L K   +++   +    H AL D ++ + + I +M
Sbjct: 99  PGEWICTMKLSRRLWPGIKYSNMALYKSRKLSVQTPAGLHHHRALYDCYITAALLIDIM 157


>gi|160874893|ref|YP_001554209.1| ribonuclease T [Shewanella baltica OS195]
 gi|160860415|gb|ABX48949.1| ribonuclease T [Shewanella baltica OS195]
 gi|315267130|gb|ADT93983.1| ribonuclease T [Shewanella baltica OS678]
          Length = 223

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-----TNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G +S+ D ++EI AV LL          ++T    + P  G    PEAL  +
Sbjct: 20  VVIDVETAGFNSQTDALLEI-AVTLLKMDNEGVIGIDKTLHFHIEPFEGANLEPEALAFN 78

Query: 64  GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113
           GI  T+     + +K +F  IF          +      +AHNA FD GF++  ++R  +
Sbjct: 79  GIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT ++A          L   C   GI   ++  H AL D+   ++++  
Sbjct: 139 KRSPFHPFATFDTATLAGLA--IGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCH 196

Query: 174 MM 175
           ++
Sbjct: 197 IV 198


>gi|297529654|ref|YP_003670929.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           C56-T3]
 gi|297252906|gb|ADI26352.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           C56-T3]
          Length = 909

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 15/173 (8%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---KLH 63
           R ++ D+ETTG    K DRII++G   + D     R F  F  P      P  L   +L 
Sbjct: 4   RFVIIDLETTGNGPKKGDRIIQLGMAVVEDGLIVER-FASFFNPE----QPIPLFIQQLT 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I ++ ++  P F+    E     +   A ++AHN  FD+ F+ AEL+R    P      
Sbjct: 59  NINEQMVEGAPLFADKAGEIAALMH--GAYFVAHNVDFDLPFLQAELERAGWPPF-AGPT 115

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IDT+ +AR   P++ +  L  L ++ G  + H   H A  D+ + + ++I ++
Sbjct: 116 IDTVELARIVLPTAESYKLGDLARQLG--LHHDRPHQADSDAEVTAKLFIALL 166


>gi|295395919|ref|ZP_06806104.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971192|gb|EFG47082.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 536

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 12/158 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ETTG D     I+    +++    +T+ T++  + P G   + EA  +HGIT E+ 
Sbjct: 321 AFDLETTGRDPHTAHIVSAALIDM----RTHETWEWLIYPEGEIPA-EASAVHGITTEYA 375

Query: 71  KDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           ++   P   +I      F     A  +AHNA +D+     E  +     L    +IDTL 
Sbjct: 376 RENGMPRAQAIAQIHQVFAERTPACIVAHNAPYDLTIFARECAQYGLA-LPDFFVIDTLV 434

Query: 129 IARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDS 164
           I +   P  +    L+++C R+G+++ +   H A  D+
Sbjct: 435 IDKHAEPFRKGPRTLDAVCARWGVSLDN--AHDATADA 470


>gi|218708963|ref|YP_002416584.1| ribonuclease T [Vibrio splendidus LGP32]
 gi|218321982|emb|CAV17988.1| Ribonuclease T (RNase T) [Vibrio splendidus LGP32]
          Length = 241

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A+ L +D +       T    + P  G      AL  +G
Sbjct: 47  VVIDVETAGFNAETDALLEICAITLRMDENGDLHPASTLHFHIEPFEGANIEQAALDFNG 106

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD+ F+NA  +R  +
Sbjct: 107 IKDPFSPLRGAVSEQEALKEIYKLVRKEQKASDCSRAIMVAHNATFDLNFVNAASERCKL 166

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++   +   +  L   C+  G+   ++  H AL D+   ++++  
Sbjct: 167 KRVPFHPFATFDTAALSGLAY--GQTVLAKACRTAGMEFDNKEAHSALYDTQKTTELFCG 224

Query: 174 MM 175
           ++
Sbjct: 225 IV 226


>gi|221140978|ref|ZP_03565471.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|302751286|gb|ADL65463.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus str. JKD6008]
          Length = 897

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +     +  P    L  I + 
Sbjct: 8   VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           I +   P+ ++  L+ L + +GIT+  +HR+   A   + L+
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162


>gi|170746460|ref|YP_001752720.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
 gi|170652982|gb|ACB22037.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
          Length = 289

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 10/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + + D    +G   + D     R   +   P  R  +P  +++HGI 
Sbjct: 1   MTVLALDFETA--NERRDSACAVGLAWIADGRVVRRESHLIRPPEMR-FAPGNIRVHGIL 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              + DKP F+++ + +    +      +AHNA FD+G + A L R    P+     + T
Sbjct: 58  PADVADKPDFAAVMAPYLG--DLARGLILAHNASFDIGVLRAGLTRAGL-PVPDLAYLCT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + ++RR  P+     L  + +R GI   H   H A  D++  +++ +  M
Sbjct: 115 VQVSRRVFPAPEGCGLGKVARRLGIRFEH---HDAGEDAYACAEIALAAM 161


>gi|238749424|ref|ZP_04610929.1| Ribonuclease T [Yersinia rohdei ATCC 43380]
 gi|238712079|gb|EEQ04292.1| Ribonuclease T [Yersinia rohdei ATCC 43380]
          Length = 226

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 22/195 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D   +   ++T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAQTDALLEIAAVTLRMDKDGWLLPDQTLHFHVEPFEGANLQPEALAFNG 90

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF+       EQ    A  +AHNA FD  F+ A  +R  + 
Sbjct: 91  IDPTNPLRGAVSEYNALHAIFTAIRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASLK 150

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ ++
Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLTAGIPFDSSQAHSALYDTMQTATLFCEL 208

Query: 175 M-----VGGSQINFG 184
           +     +GG  +  G
Sbjct: 209 VNRWKKLGGWPVPAG 223


>gi|156979774|ref|YP_001442033.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|156721909|dbj|BAF78326.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp.
           aureus Mu3]
          Length = 897

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +     +  P    L  I + 
Sbjct: 8   VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           I +   P+ ++  L+ L + +GIT+  +HR+   A   + L+
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162


>gi|240115419|ref|ZP_04729481.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID18]
          Length = 255

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           M   V D+E+TG +   DR+ E+  V+          + V    N +K  P+   +L GI
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPQFVAELTGI 74

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 75  SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 131 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173


>gi|282916722|ref|ZP_06324480.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus D139]
 gi|282319209|gb|EFB49561.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus D139]
 gi|298694746|gb|ADI97968.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED133]
 gi|323439542|gb|EGA97263.1| ATP-dependent DNA helicase [Staphylococcus aureus O11]
          Length = 897

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +     +  P    L  I + 
Sbjct: 8   VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           I +   P+ ++  L+ L + +GIT+  +HR+   A   + L+
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162


>gi|42524627|ref|NP_970007.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
 gi|39576837|emb|CAE78066.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
          Length = 276

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 8/173 (4%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N+   + FD ET+G       ++E GAV+     +  R  Q    P     +   + +HG
Sbjct: 8   NEYTYVAFDTETSGAYPVGHDVVEFGAVKWYKGEEVGR-LQFLFKPR-EPMTDFIIGIHG 65

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E + D P  +    E  +FF  + A  +AH+A FD+GF+  + ++ N+ PL P   +
Sbjct: 66  ITNEMVADAPLITEKIREIHEFF--KGAIVMAHHAPFDLGFMAIDFEK-NQLPLLPEPAL 122

Query: 125 DTLSIARRK-HPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKM 174
            T  ++R+  H    + L +L +   I    +HR+   A    H+    + KM
Sbjct: 123 CTSLLSRKWIHGVENHKLQTLVRHLNIDGGQAHRAYDDAKACLHVGLACFAKM 175


>gi|302879448|ref|YP_003848012.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
 gi|302582237|gb|ADL56248.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
          Length = 303

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 11/124 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY----SKTNRTFQVF--LCPNGRKNSP 57
           +  +R +V D ETTG++S  D IIE+G V L +Y     +  R    F  L   G    P
Sbjct: 37  REMLRGVVVDTETTGINSAQDAIIELGMV-LFEYDPDTGEAGRVLGSFDQLEDPGMAIPP 95

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           E+ ++HGITDE ++ K    +  + F D  +      IAHN+KFD  F+   L      P
Sbjct: 96  ESTEVHGITDEMVQGKRIDDAAVAAFLDGVSVV----IAHNSKFDRVFLEKRLSVFETLP 151

Query: 118 LDPS 121
              S
Sbjct: 152 WGCS 155


>gi|283770528|ref|ZP_06343420.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus
           H19]
 gi|283460675|gb|EFC07765.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus
           H19]
          Length = 897

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +     +  P    L  I + 
Sbjct: 8   VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           I +   P+ ++  L+ L + +GIT+  +HR+   A   + L+
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162


>gi|261253571|ref|ZP_05946144.1| ribonuclease T [Vibrio orientalis CIP 102891]
 gi|260936962|gb|EEX92951.1| ribonuclease T [Vibrio orientalis CIP 102891]
          Length = 218

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L +D +       T    + P  G     EAL+ +G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLKMDENGDLAPASTIHFHVEPFEGANLEKEALEFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFI--NAELQRI 113
           I D F  L+   + +    E +     EQ A        +AHNA FD  F+   +E  ++
Sbjct: 80  IRDPFSPLRGAVTEAEALKEIYKLVRKEQKAADCSRAIMVAHNATFDHSFVMEASERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++   +   +  L   CK  G+   ++  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTAALSGLAY--GQTVLAKACKTAGMDFDNKEAHSALYDTQKTAELFCG 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|21283074|ref|NP_646162.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486295|ref|YP_043516.1| hypothetical protein SAS1398 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253732097|ref|ZP_04866262.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253733298|ref|ZP_04867463.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|297207885|ref|ZP_06924318.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911970|ref|ZP_07129413.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|81827855|sp|Q6G9A7|DING_STAAS RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81847815|sp|Q8NWP2|DING_STAAW RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|21204514|dbj|BAB95210.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244738|emb|CAG43174.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253724144|gb|EES92873.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253728838|gb|EES97567.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|296887459|gb|EFH26359.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300886216|gb|EFK81418.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus TCH70]
          Length = 897

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +     +  P    L  I + 
Sbjct: 8   VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           I +   P+ ++  L+ L + +GIT+  +HR+   A   + L+
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162


>gi|156368138|ref|XP_001627553.1| predicted protein [Nematostella vectensis]
 gi|156214466|gb|EDO35453.1| predicted protein [Nematostella vectensis]
          Length = 275

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 16/171 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEA 59
           MI +N     V D+ETTGL   NDRI++I  V++     K +    +  C +  K     
Sbjct: 20  MIPRNATY-CVLDVETTGLSKLNDRIVQIACVKVKPTGDKESWMSYINPCMDREKQLAGG 78

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPL 118
            K+H ++ + L  KP FS I    W F     AE+ +A+N  +D   +  E +RI++   
Sbjct: 79  YKVHHLSPDMLLKKPKFSEIVESLWRFLC--GAEYLVAYNCLYDWDMLCQEFRRIDRTES 136

Query: 119 DPSRI----------IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKH 158
             +++          ID L ++    PS S + L ++ K   I    R+ +
Sbjct: 137 GYTKLEEEFVKKFTWIDVLRLSISSFPSLSNHKLETVAKHLKIEYMSRTTY 187


>gi|15643262|ref|NP_228306.1| DNA polymerase III, epsilon subunit, putative [Thermotoga maritima
           MSB8]
 gi|4981007|gb|AAD35581.1|AE001726_15 DNA polymerase III, epsilon subunit, putative [Thermotoga maritima
           MSB8]
          Length = 189

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 17/179 (9%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEAL-KLHGITD 67
           V D ETTG D    DRI+EI AV +       N+ F   + P  R   P  + K+HGI++
Sbjct: 13  VVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNP--RIRIPALIQKVHGISN 70

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + + P   +++  F D+   +    + HNA FD+ F++   +     P+  +  IDTL
Sbjct: 71  MDIVEAPDMDTVYDLFRDYV--KGTVLVFHNANFDLTFLDMMAKETGNFPIT-NPYIDTL 127

Query: 128 SIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQIN 182
            ++      P S   L  L +R GI  + R  H AL D+ + + V++K++  +G +++N
Sbjct: 128 DLSEEIFGRPHS---LKWLSERLGIKTTIR--HRALPDALVTARVFVKLVEFLGENRVN 181


>gi|15924445|ref|NP_371979.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927036|ref|NP_374569.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus N315]
 gi|57650410|ref|YP_186339.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus COL]
 gi|87161026|ref|YP_494043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88195189|ref|YP_499990.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|148267941|ref|YP_001246884.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394004|ref|YP_001316679.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151221578|ref|YP_001332400.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509623|ref|YP_001575282.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253315964|ref|ZP_04839177.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|255006242|ref|ZP_05144843.2| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257795489|ref|ZP_05644468.1| DnaQ family protein [Staphylococcus aureus A9781]
 gi|258413298|ref|ZP_05681574.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9763]
 gi|258420595|ref|ZP_05683537.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9719]
 gi|258426791|ref|ZP_05688011.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9299]
 gi|258444789|ref|ZP_05693118.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8115]
 gi|258447377|ref|ZP_05695521.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6300]
 gi|258449738|ref|ZP_05697839.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6224]
 gi|258451113|ref|ZP_05699148.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5948]
 gi|258454593|ref|ZP_05702557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5937]
 gi|269203080|ref|YP_003282349.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892951|ref|ZP_06301186.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8117]
 gi|282927982|ref|ZP_06335591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A10102]
 gi|284024454|ref|ZP_06378852.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848419|ref|ZP_06789165.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9754]
 gi|295407205|ref|ZP_06817005.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8819]
 gi|296275347|ref|ZP_06857854.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297244629|ref|ZP_06928512.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8796]
 gi|304380963|ref|ZP_07363621.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|81832505|sp|Q7A5K4|DING_STAAN RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81855933|sp|Q99U34|DING_STAAM RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81859586|sp|Q5HFW8|DING_STAAC RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|122539544|sp|Q2FYH5|DING_STAA8 RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|123485907|sp|Q2FGY5|DING_STAA3 RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|13701253|dbj|BAB42548.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247226|dbj|BAB57617.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|57284596|gb|AAW36690.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127000|gb|ABD21514.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202747|gb|ABD30557.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147741010|gb|ABQ49308.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946456|gb|ABR52392.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus JH1]
 gi|150374378|dbj|BAF67638.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368432|gb|ABX29403.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|257789461|gb|EEV27801.1| DnaQ family protein [Staphylococcus aureus A9781]
 gi|257839862|gb|EEV64330.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9763]
 gi|257843543|gb|EEV67950.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9719]
 gi|257849952|gb|EEV73910.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9299]
 gi|257850282|gb|EEV74235.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8115]
 gi|257853568|gb|EEV76527.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6300]
 gi|257856986|gb|EEV79886.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6224]
 gi|257861168|gb|EEV83981.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5948]
 gi|257862976|gb|EEV85740.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5937]
 gi|262075370|gb|ACY11343.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940948|emb|CBI49332.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282590279|gb|EFB95359.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A10102]
 gi|282764948|gb|EFC05073.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8117]
 gi|285817135|gb|ADC37622.1| DinG family ATP-dependent helicase YoaA [Staphylococcus aureus
           04-02981]
 gi|294824445|gb|EFG40868.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9754]
 gi|294967918|gb|EFG43947.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8819]
 gi|297178659|gb|EFH37905.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8796]
 gi|304340488|gb|EFM06424.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|315129170|gb|EFT85165.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus CGS03]
 gi|315197799|gb|EFU28133.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320140373|gb|EFW32229.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142700|gb|EFW34503.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314132|gb|AEB88545.1| Probable ATP-dependent helicase dinG -like protein [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329723190|gb|EGG59721.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329727432|gb|EGG63888.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 897

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +     +  P    L  I + 
Sbjct: 8   VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           I +   P+ ++  L+ L + +GIT+  +HR+   A   + L+
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162


>gi|302333066|gb|ADL23259.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 897

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +     +  P    L  I + 
Sbjct: 8   VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           I +   P+ ++  L+ L + +GIT+  +HR+   A   + L+
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162


>gi|91792755|ref|YP_562406.1| ribonuclease T [Shewanella denitrificans OS217]
 gi|123356922|sp|Q12PE3|RNT_SHEDO RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|91714757|gb|ABE54683.1| RNAse T [Shewanella denitrificans OS217]
          Length = 226

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-----TNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G ++  D ++EI AV LL  +       ++T    + P  G    PEAL  +
Sbjct: 20  VVIDVETAGFNANTDALLEI-AVTLLKMNDDGILVLDKTVHFHIEPFEGANLEPEALAFN 78

Query: 64  GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113
           GI  T+     + +K +F  IF          +      +AHNA FD+ F+N  ++R  +
Sbjct: 79  GIDPTNPLRGAVSEKEAFLEIFKTVKKGQKASDCHRSIIVAHNAAFDLSFVNKAIERNDL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT ++A          L   CK  GI   ++  H AL D+   ++++  
Sbjct: 139 KRSPFHPFASFDTATLAGLS--IGHTVLAKACKMAGIDFDNKEAHSALYDTERTAELFCH 196

Query: 174 MM 175
           ++
Sbjct: 197 IV 198


>gi|82751054|ref|YP_416795.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122]
 gi|123549199|sp|Q2YY51|DING_STAAB RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|82656585|emb|CAI81008.1| probable ATP-dependent DNA helicase [Staphylococcus aureus RF122]
          Length = 897

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 20/166 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGA-----VELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           V D+ETTG     D II+IG      ++++D Y    RT          +  P    L  
Sbjct: 8   VVDLETTGNQLDFDDIIQIGITFVRNIQIIDTYHSMIRT--------NLEIPPFIQALTS 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I +  L+  P F+ +    +D  N ++  ++AHN  FD+ FI    +  N     P R+I
Sbjct: 60  IEENMLQQAPYFNQVAQGIYD--NMKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKRVI 116

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           DTL I +   P+ ++  L+ L + +GIT+  +HR+   A   + L+
Sbjct: 117 DTLEIFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162


>gi|323442219|gb|EGA99850.1| ATP-dependent DNA helicase [Staphylococcus aureus O46]
          Length = 897

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +     +  P    L  I + 
Sbjct: 8   VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           I +   P+ ++  L+ L + +GIT+  +HR+   A   + L+
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162


>gi|153000260|ref|YP_001365941.1| ribonuclease T [Shewanella baltica OS185]
 gi|304409837|ref|ZP_07391457.1| ribonuclease T [Shewanella baltica OS183]
 gi|307304193|ref|ZP_07583946.1| ribonuclease T [Shewanella baltica BA175]
 gi|166200019|sp|A6WM39|RNT_SHEB8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|151364878|gb|ABS07878.1| ribonuclease T [Shewanella baltica OS185]
 gi|304352355|gb|EFM16753.1| ribonuclease T [Shewanella baltica OS183]
 gi|306913091|gb|EFN43514.1| ribonuclease T [Shewanella baltica BA175]
          Length = 223

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-----TNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G +S+ D ++EI AV LL          ++T    + P  G    PEAL  +
Sbjct: 20  VVIDVETAGFNSQTDALLEI-AVTLLKMDNEGVIGIDKTLHFHIEPFEGANLEPEALAFN 78

Query: 64  GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113
           GI  T+     + +K +F  IF          +      +AHNA FD GF++  ++R  +
Sbjct: 79  GIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT ++A          L   C   GI   ++  H AL D+   ++++  
Sbjct: 139 KRSPFHPFATFDTATLAGLA--IGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCH 196

Query: 174 MM 175
           ++
Sbjct: 197 IV 198


>gi|282921701|ref|ZP_06329418.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9765]
 gi|282593963|gb|EFB98952.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9765]
          Length = 897

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +     +  P    L  I + 
Sbjct: 8   VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           I +   P+ ++  L+ L + +GIT+  +HR+   A   + L+
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162


>gi|260779364|ref|ZP_05888256.1| ribonuclease T [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605528|gb|EEX31823.1| ribonuclease T [Vibrio coralliilyticus ATCC BAA-450]
          Length = 219

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L +D +   +   T    + P  G     EAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLKMDENGELQPASTIHFHVEPFEGANLEKEALDFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+     S    E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 80  IHDPFSPLRGAVPESEALKEIYKLVRKEQKAADCSRAIMVAHNATFDHNFVMAASERSKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++   +   +  L   CK  G+   ++  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMDFDNKEAHSALYDTLKTAELFCG 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|257876649|ref|ZP_05656302.1| DNA polymerase III [Enterococcus casseliflavus EC20]
 gi|257810815|gb|EEV39635.1| DNA polymerase III [Enterococcus casseliflavus EC20]
          Length = 918

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG DS  DRII+ G V + D    NR F   + P+ R+ S +  +L  IT++ +
Sbjct: 7   VVDLETTGTDSTIDRIIQFGCVLVQDGKIINR-FAADINPD-RRISKQIQRLTHITNQQV 64

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
              P F  I    ++  +  N  ++AHN  FD  F++ E  R    PL  P   IDT+ +
Sbjct: 65  SKAPYFEDIADTIYNLLS--NTIFVAHNIYFDYHFLSNEFVRCGLPPLSIPG--IDTVEL 120

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           ++   P+ S   L  L    G    H + H A  D+ + + +++
Sbjct: 121 SQVFLPTESSFRLGDLADSIG--FRHDNPHQADSDAEVTAALFL 162


>gi|126173968|ref|YP_001050117.1| ribonuclease T [Shewanella baltica OS155]
 gi|217973711|ref|YP_002358462.1| ribonuclease T [Shewanella baltica OS223]
 gi|166200018|sp|A3D3D5|RNT_SHEB5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|125997173|gb|ABN61248.1| RNAse T [Shewanella baltica OS155]
 gi|217498846|gb|ACK47039.1| ribonuclease T [Shewanella baltica OS223]
          Length = 223

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-----TNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G +S+ D ++EI AV LL          ++T    + P  G    PEAL  +
Sbjct: 20  VVIDVETAGFNSQTDALLEI-AVTLLKMDNEGVIGIDKTLHFHIEPFEGANLEPEALAFN 78

Query: 64  GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113
           GI  T+     + +K +F  IF          +      +AHNA FD GF++  ++R  +
Sbjct: 79  GIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT ++A          L   C   GI   ++  H AL D+   ++++  
Sbjct: 139 KRSPFHPFATFDTATLAGLA--IGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCH 196

Query: 174 MM 175
           ++
Sbjct: 197 IV 198


>gi|49483644|ref|YP_040868.1| hypothetical protein SAR1466 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425521|ref|ZP_05601946.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428180|ref|ZP_05604578.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257433568|ref|ZP_05609926.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436410|ref|ZP_05612457.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282904038|ref|ZP_06311926.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905803|ref|ZP_06313658.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908773|ref|ZP_06316591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911034|ref|ZP_06318836.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914246|ref|ZP_06322033.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M899]
 gi|282919169|ref|ZP_06326904.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282924353|ref|ZP_06332027.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C101]
 gi|283958220|ref|ZP_06375671.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293501272|ref|ZP_06667123.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510233|ref|ZP_06668941.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M809]
 gi|293526828|ref|ZP_06671512.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295427965|ref|ZP_06820597.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297591065|ref|ZP_06949703.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|81828017|sp|Q6GGV4|DING_STAAR RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|49241773|emb|CAG40464.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271978|gb|EEV04116.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275021|gb|EEV06508.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257281661|gb|EEV11798.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284692|gb|EEV14812.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282313740|gb|EFB44133.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C101]
 gi|282316979|gb|EFB47353.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282322314|gb|EFB52638.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M899]
 gi|282324729|gb|EFB55039.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327037|gb|EFB57332.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282331095|gb|EFB60609.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595656|gb|EFC00620.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus C160]
 gi|283790369|gb|EFC29186.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920386|gb|EFD97450.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291096277|gb|EFE26538.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291467177|gb|EFF09695.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M809]
 gi|295128323|gb|EFG57957.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297575951|gb|EFH94667.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312438140|gb|ADQ77211.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195353|gb|EFU25740.1| hypothetical protein CGSSa00_06780 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 897

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +     +  P    L  I + 
Sbjct: 8   VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAEEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           I +   P+ ++  L+ L + +GIT+  +HR+   A   + L+
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162


>gi|88860421|ref|ZP_01135059.1| RNase T [Pseudoalteromonas tunicata D2]
 gi|88817619|gb|EAR27436.1| RNase T [Pseudoalteromonas tunicata D2]
          Length = 221

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 19/178 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI    L +D       ++T    + P  G      A++ +G
Sbjct: 19  VVIDVETAGFNNQTDALLEIAVTTLKMDDEGVLSLDKTLHFHITPFEGANIEQAAIEFNG 78

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQR--I 113
           I D F  L+     S  F E   F ++       Q +  +AHNA FD GF+NA ++R  I
Sbjct: 79  I-DPFSALRGAVEESIAFKEICKFVSKSQKDAGCQRSVIVAHNAAFDQGFVNAAVERCKI 137

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            + P  P    DT S+A       +  L   C   GI   +   H A+ D+   ++++
Sbjct: 138 KRTPFHPFVSFDTTSLAGLAL--GQTVLAKACIAAGIEFDNSQAHSAVYDTERTAELF 193


>gi|332756741|gb|EGJ87088.1| exonuclease family protein [Shigella flexneri 4343-70]
 gi|333004838|gb|EGK24360.1| exonuclease family protein [Shigella flexneri K-218]
          Length = 220

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K      + + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSLLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD        +R+   P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFD--------RRVL--PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|329896219|ref|ZP_08271397.1| Ribonuclease T [gamma proteobacterium IMCC3088]
 gi|328921890|gb|EGG29257.1| Ribonuclease T [gamma proteobacterium IMCC3088]
          Length = 211

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 28/197 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--------ELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++ D+ET G +++ D ++E+ A         EL  +   +     F    G      AL+
Sbjct: 20  VIIDVETGGFNAQTDALLEVAATIVRMEPDGELYVHETVHHNVVPF---EGANLEASALE 76

Query: 62  LHGITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR- 112
             GI       E L +  +  SIF          N   A  + HNA FD GFINA ++R 
Sbjct: 77  FTGIDPYHPFREALSEADALESIFKAIRKEIKSTNCTRAVLVGHNAHFDAGFINAAVERT 136

Query: 113 -INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD----SHLL 167
            + ++P  P    DT ++A       +  L   C + GI   +++ H A  D    +HL 
Sbjct: 137 GLKRNPFHPFSYFDTATLAGLAF--GQTVLAKACLQAGIEFDNKAAHSAAYDADRTAHLF 194

Query: 168 SDVY-IKMMVGGSQINF 183
            ++  I    GG   N 
Sbjct: 195 CNIVNIWRQCGGFDANL 211


>gi|312829847|emb|CBX34689.1| dnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus ECT-R 2]
          Length = 897

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +     +  P    L  I + 
Sbjct: 8   VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           I +   P+ ++  L+ L + +GIT+  +HR+   A   + L+
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162


>gi|152979466|ref|YP_001345095.1| ribonuclease T [Actinobacillus succinogenes 130Z]
 gi|150841189|gb|ABR75160.1| ribonuclease T [Actinobacillus succinogenes 130Z]
          Length = 226

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 26/196 (13%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGR 53
           + KN+ R    +V D+ET GL+ + D ++E+ AV L    +     ++T+   + P  G 
Sbjct: 19  LLKNRFRGYYPVVIDVETAGLNCQTDGLLELAAVTLKMNDRGDLLPDQTYHCHIRPFEGA 78

Query: 54  KNSPEALKLHGITDE-------FLKDKPSFSSIFSEFWDFFNEQNAEW-----IAHNAKF 101
             +PE++K++GI  E        + +  + + +F        ++NA       +AHNA F
Sbjct: 79  GINPESMKINGIDLESPIRNAIAVSESEAITGLFQMVRR--GQKNAGCQRSIIVAHNAAF 136

Query: 102 DVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
           D GF+ A  +R  I ++P  P    DT +++       +  L   C+   I       H 
Sbjct: 137 DHGFVMAAAERTKIKRNPFHPFGSFDTATLSGLMF--GQTVLIKACQSASIPFDSNQAHS 194

Query: 160 ALLDSHLLSDVYIKMM 175
           AL D+   ++++  M+
Sbjct: 195 ALYDTERTAELFCYMV 210


>gi|227495535|ref|ZP_03925851.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226831082|gb|EEH63465.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 206

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67
           +  DIETTGL   +D I E+ AV+   Y K     TF   + P GR+      +L GI +
Sbjct: 18  VSVDIETTGL-GDSDAITELAAVK---YQKGQVVETFSSLVNP-GRQIPVFITRLTGIDN 72

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + D P+   +   F +F +   +  +AHNA+FD  F+     ++  +   P+  IDT+
Sbjct: 73  QLVADAPTLREVLPVFLEFCDFPRSVLLAHNARFDTRFLMNACAQLGLEWQFPAS-IDTV 131

Query: 128 SIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +R   P  +   + L +L   +G  I + + H AL D++   ++Y
Sbjct: 132 FFSRALLPRPQVQNHRLGTLAHHFG--IKNPNAHRALADAYTCLELY 176


>gi|262283016|ref|ZP_06060783.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp.
           2_1_36FAA]
 gi|262261268|gb|EEY79967.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp.
           2_1_36FAA]
          Length = 818

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 20/174 (11%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH--- 63
           M+  + D+E TG  S   +II++G V +L+  +  +T+Q  + P+      EAL+ H   
Sbjct: 1   MKYAIVDLEATGTGS-TAKIIQVGIV-ILEDGEIKQTYQTDINPH------EALEEHIKQ 52

Query: 64  --GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
             G++D+ L   P FS +  E ++    ++A ++AHN KFD   +   L     D L P 
Sbjct: 53  LTGLSDQRLSQAPDFSQVAREIYELI--EDAVFVAHNVKFDANLLAESLFWEGFDLLSPR 110

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+   P+  +  L+SLC+   I +     H A+ D+   + +++K+
Sbjct: 111 --VDTVELAQVVFPTYEKYGLSSLCELLEIPLEQ--AHTAISDAMATALLFLKI 160


>gi|238854632|ref|ZP_04644962.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 269-3]
 gi|260664425|ref|ZP_05865277.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US]
 gi|282932977|ref|ZP_06338374.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 208-1]
 gi|238832422|gb|EEQ24729.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 269-3]
 gi|260561490|gb|EEX27462.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US]
 gi|281303012|gb|EFA95217.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 208-1]
          Length = 936

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 10/166 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69
           V D+ETTG     DRII+ G   ++   +  +T+   + P    + P+A++ L GI    
Sbjct: 12  VVDLETTGTRRGQDRIIQFGCA-IIKNRQIIKTYSFLINPEA--DIPQAVQNLTGIKPTD 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P F    ++  D    Q+  ++AHN  FD+ F+NAEL   N  P   +R IDT+ +
Sbjct: 69  VINQPVFKKYAAQIEDIL--QDTVFVAHNINFDLPFLNAELAA-NSFPKLHNRAIDTVEL 125

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++   P+     L+ L   + + + H + H A  D++  + + +K+
Sbjct: 126 SKIAFPTLPSYRLSDLT--HSLNLKHTNPHQADSDAYATASLLLKI 169


>gi|259908542|ref|YP_002648898.1| ribonuclease T [Erwinia pyrifoliae Ep1/96]
 gi|224964164|emb|CAX55671.1| Ribonuclease T [Erwinia pyrifoliae Ep1/96]
 gi|283478503|emb|CAY74419.1| ribonuclease T [Erwinia pyrifoliae DSM 12163]
          Length = 219

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D+K + ++EI AV L +D   + + + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDDTLHFHVEPFAGSVLLPEALTFNG 79

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF        +     A  +AHNA FD+ F+NA  +R  + 
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   G+       H AL D+   +D++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLAKACHAAGMAFDSAQAHSALYDTLQTADLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|254426843|ref|ZP_05040550.1| ribonuclease T [Alcanivorax sp. DG881]
 gi|196193012|gb|EDX87971.1| ribonuclease T [Alcanivorax sp. DG881]
          Length = 228

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 19/190 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRT-----FQVFLCPNGRKN 55
           +R      +V D+ET G +S+ D ++EI AV + +D     R      F V   P G   
Sbjct: 16  LRFRGFLPVVIDVETGGFNSQTDALLEIAAVLIEMDAQGNLRPSTRIQFHVDPFP-GANL 74

Query: 56  SPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFIN 107
              AL   GI         + ++ +   +F        +     A  + HN+ FD GF+N
Sbjct: 75  EQAALDFTGIDPSNPLRGAVSEETALKGVFEPIRKAVKQHGCSRAVLVGHNSFFDQGFLN 134

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A   R  I + P  P    DT ++A   +   +  L   C+  GI  S R  H AL D+ 
Sbjct: 135 AATDRADIKRSPFHPFSSFDTATLAGLVY--GQTVLAKACEAAGIRFSQREAHSALYDAT 192

Query: 166 LLSDVYIKMM 175
             ++++  M+
Sbjct: 193 RTAELFCSMV 202


>gi|108759005|ref|YP_633932.1| exonuclease [Myxococcus xanthus DK 1622]
 gi|108462885|gb|ABF88070.1| exonuclease [Myxococcus xanthus DK 1622]
          Length = 988

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 19/172 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGIT 66
           R +  D+ETTGLD + D +IE+G +   +  +  R  +++   +  +  P  + +L G+T
Sbjct: 10  RHVFLDLETTGLDPRVDEVIELGCIFFENGREVERFARLY---SASRPLPLTIRRLTGLT 66

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124
           D  L+  P F +  +E      E+ + W  +AHNA F+ GF+   L  I+   LD   ++
Sbjct: 67  DADLEGHPRFGTDIAE----LREKLSGWTVVAHNAPFEKGFLPDLLGPIHAPVLDSCELM 122

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             L      HP    + L SL +  G+ +  R  H A+ D   +  V +  M
Sbjct: 123 HYL------HPELPSHSLESLLRWGGLAL--RQPHRAVSDCEAVYSVLVHAM 166


>gi|282890349|ref|ZP_06298877.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499731|gb|EFB42022.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 249

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 19/163 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           +  D ETTGLD   DRIIE+ AV    + +    F+  + P      PE ++++H IT E
Sbjct: 10  VCIDCETTGLDVHADRIIEV-AVARFTFDQILEQFESLINPEC--PIPESSIQIHHITAE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR------INKDPLDPSR 122
            + DKP  + +  +  D         + H   FD+  I    +R      I ++P     
Sbjct: 67  MVADKPPITQVIPQILDAVRSHT--IVGHGVLFDIELIAVAAERAGIPCSIRQNPY---- 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLD 163
            +DTL +AR    S  N L  L   + I    +HR+    L++
Sbjct: 121 -LDTLRLARLYGESPINSLEQLRMHFNIQFEGAHRAMSDVLVN 162


>gi|257785157|ref|YP_003180374.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
 gi|257473664|gb|ACV51783.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
          Length = 978

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 10/149 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGL  K   +IEI A +L       R FQ F+ P G     E   L  ITDE 
Sbjct: 20  VVLDTETTGLSFKKCSLIEISAAKLSGREIIER-FQTFVDP-GCPIPEEITTLTSITDED 77

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K  PS     +   +F        +AHNA FD  FI    +R+          IDTLS+
Sbjct: 78  VKGAPSAKEAVAALAEFVG--GLPVLAHNATFDRTFI----ERVPGGTSVSDTWIDTLSL 131

Query: 130 ARRKHPS-SRNDLNSLCKRYG-ITISHRS 156
           +R   P  S + L+S+ + +G + ++HR+
Sbjct: 132 SRIALPRLSSHKLSSMAEAFGTMKVTHRA 160


>gi|251796459|ref|YP_003011190.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           JDR-2]
 gi|247544085|gb|ACT01104.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           JDR-2]
          Length = 953

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 10/172 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65
           M+  V D+ETTG  S +D I+++G   L D  +   T+  F+ P      P  + +L GI
Sbjct: 1   MKFAVLDLETTG-HSVSDDILQVGLAVLDDNLEIVETYSSFVRPT--IEIPAFITQLTGI 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             + + D P    +  +   +   ++A  +AHN  FD GF+N  L R    P    R +D
Sbjct: 58  DADMVADAPELDEVLMQLIPYL--EDAVLVAHNVNFDAGFLNQALDRCGYHPFIGRR-LD 114

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKM 174
           T+ + R  +PS +   L ++ + +GI     HR+   A+  + L +    K+
Sbjct: 115 TIELLRILYPSITTYQLGAVTELFGIAHDQHHRADSDAIATAELFAQSVQKL 166


>gi|86153724|ref|ZP_01071927.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121612917|ref|YP_001000159.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005117|ref|ZP_02270875.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85842685|gb|EAQ59897.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87250067|gb|EAQ73025.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 253

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 9/145 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           + DIE+TG  SK + I+EIGAV++ +  +  R FQ F+     K  PE + +L GIT E 
Sbjct: 74  IVDIESTGGVSKGE-ILEIGAVKIQNSKEIAR-FQSFV---KVKEIPENITELTGITYEM 128

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ PS + + S+F  F   +++ ++AHN +FD  FI+  L       L   RI  T+  
Sbjct: 129 VENAPSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISRALNECGFGILLNRRIC-TIEF 185

Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154
           A+    S +  L  L +  G+  +H
Sbjct: 186 AQCCIESPKYKLEVLKEFLGVENTH 210


>gi|333003546|gb|EGK23086.1| exonuclease family protein [Shigella flexneri VA-6]
 gi|333004693|gb|EGK24216.1| exonuclease family protein [Shigella flexneri K-272]
 gi|333018414|gb|EGK37712.1| exonuclease family protein [Shigella flexneri K-227]
          Length = 220

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K      + + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSLLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|332983437|ref|YP_004464878.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1
           BON]
 gi|332701115|gb|AEE98056.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1
           BON]
          Length = 296

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 6/166 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTGL+   D+I+EI AV+   Y +   ++   + P G      A K++ ITDE 
Sbjct: 123 VAIDLETTGLNPAIDKIVEIAAVK-FKYGEIIDSYTTLINP-GIHIPSSASKINHITDET 180

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  S +     +F  +  +  + HNA FD+ F+     ++  D  +P   IDTL  
Sbjct: 181 VHGAPDLSEVLPNLLNFIGD--SILVMHNASFDLKFLKYHAAKLGYDISNP--FIDTLPT 236

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++      N   +    Y    +  + H A  D+ +   V IK +
Sbjct: 237 CKKLFTDFENYQLATVANYLKISTADTFHRACNDAEICGPVLIKCI 282


>gi|283470668|emb|CAQ49879.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 897

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N     +  +     +  P    L  I + 
Sbjct: 8   VVDLETTGNQLDFDDIIQIG----ITFVRNNHIIDTYHSMIRTNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAEEIYD--KIKDCIFVAHNVDFDLNFIKKAFKNCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           I +   P+ ++  L+ L + +GIT+  +HR+   A   + L+
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162


>gi|257430810|ref|ZP_05607192.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257278938|gb|EEV09557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 68-397]
          Length = 905

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +     +  P    L  I + 
Sbjct: 8   VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAEEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           I +   P+ ++  L+ L + +GIT+  +HR+   A   + L+
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162


>gi|254493534|ref|ZP_05106705.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291]
 gi|268681897|ref|ZP_06148759.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332]
 gi|226512574|gb|EEH61919.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291]
 gi|268622181|gb|EEZ54581.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332]
 gi|317164039|gb|ADV07580.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 264

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           M   V D+E+TG +   DR+ E+  V+          + V    N +K  P+   +L GI
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 84  SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 140 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182


>gi|291044082|ref|ZP_06569798.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
 gi|291012545|gb|EFE04534.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
          Length = 264

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           M   V D+E+TG +   DR+ E+  V+          + V    N +K  P+   +L GI
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 84  SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 140 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182


>gi|317503311|ref|ZP_07961361.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
 gi|315665570|gb|EFV05187.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
          Length = 286

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 11/142 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFD+ETTGLD  NDRII++  +++    K  R   +    N  ++ PE + +L GI DE
Sbjct: 10  VVFDLETTGLDIVNDRIIQLSFIKVYPDGKEERGDHLI---NPGRHIPEMITELTGIDDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDT 126
            +KD PSF  I +   + F  +  ++   N+ +FDV  +  E  R   D      R+ID 
Sbjct: 67  KVKDAPSFKQISTTLAETF--KGCDFAGFNSNRFDVPMLAEEFLRAGIDFDFSKCRLIDA 124

Query: 127 LSIARRKHPSSRNDLNSLCKRY 148
            +I    H   R +L +  K Y
Sbjct: 125 QAIF---HKMERRNLAAAYKFY 143


>gi|194098334|ref|YP_002001392.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           NCCP11945]
 gi|268598740|ref|ZP_06132907.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11]
 gi|193933624|gb|ACF29448.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           NCCP11945]
 gi|268582871|gb|EEZ47547.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11]
          Length = 264

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           M   V D+E+TG +   DR+ E+  V+          + V    N +K  P+   +L GI
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 84  SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 140 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182


>gi|319954745|ref|YP_004166012.1| exonuclease rnase t and DNA polymerase iii [Cellulophaga algicola
           DSM 14237]
 gi|319423405|gb|ADV50514.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga algicola
           DSM 14237]
          Length = 220

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 19/175 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPN--GRKNSPEALKLHGITD 67
           V D ETTG D  NDRI+ IGAV+L+      R  F+VF+     G+  +P    +HGI  
Sbjct: 38  VLDTETTGFDYSNDRILCIGAVKLVQQQIAIRDGFEVFVTQQVYGKDAAP----IHGILK 93

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                + +      +F  +    N+  IAH+A FD+  IN  L R N  P   +  +DT 
Sbjct: 94  NSTVPRVTELEALEQFITYVG--NSVIIAHHAIFDLNMINNALLR-NGLPELKNTYLDTS 150

Query: 128 SIAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            + +    R +  +R +   L+ L  ++  +IS + +H A+ D+++ + +++K++
Sbjct: 151 HLYKKTIIRSNLITRKENYTLDELADKF--SISKKDRHTAMGDAYITAILFLKII 203


>gi|268603417|ref|ZP_06137584.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1]
 gi|268587548|gb|EEZ52224.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1]
          Length = 264

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           M   V D+E+TG +   DR+ E+  V+          + V    N +K  P+   +L GI
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 84  SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 140 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182


>gi|238757732|ref|ZP_04618915.1| Ribonuclease T [Yersinia aldovae ATCC 35236]
 gi|238703975|gb|EEP96509.1| Ribonuclease T [Yersinia aldovae ATCC 35236]
          Length = 226

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 22/195 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAKTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFNG 90

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF        EQ    A  +AHNA FD  F+ A  +R  + 
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNANFDHSFVMAAAERASLK 150

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ ++
Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCEL 208

Query: 175 M-----VGGSQINFG 184
           +     +GG  +  G
Sbjct: 209 VNRWKKLGGWPVPAG 223


>gi|257900260|ref|ZP_05679913.1| DNA polymerase subunit III [Enterococcus faecium Com15]
 gi|257838172|gb|EEV63246.1| DNA polymerase subunit III [Enterococcus faecium Com15]
          Length = 295

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 6/162 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGL   +  I++IGA++     + +R +Q  + P     S    K+ G+  E 
Sbjct: 125 VVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQ-NIKPFRSNISKRITKITGLELED 183

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P+F     +   F +      +AHNA FD+ F+  +L   N +     R+IDTL +
Sbjct: 184 VVNMPTFEDFSPQLMSFIS--CYTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLPL 241

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           ARR   +  + L +L K Y + + + S H AL D  + + VY
Sbjct: 242 ARRHFETPNHKLITL-KDY-LNLDNNS-HDALEDCLVTNKVY 280


>gi|268684113|ref|ZP_06150975.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679]
 gi|268624397|gb|EEZ56797.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679]
          Length = 264

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           M   V D+E+TG +   DR+ E+  V+          + V    N +K  P+   +L GI
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 84  SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 140 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182


>gi|257897430|ref|ZP_05677083.1| DNA polymerase subunit III [Enterococcus faecium Com12]
 gi|257833995|gb|EEV60416.1| DNA polymerase subunit III [Enterococcus faecium Com12]
          Length = 291

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 6/162 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGL   +  I++IGA++     + +R +Q  + P     S    K+ G+  E 
Sbjct: 125 VVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQ-NIKPFRSNISKRITKITGLELED 183

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P+F     +   F +      +AHNA FD+ F+  +L   N +     R+IDTL +
Sbjct: 184 VVNMPTFEDFSPQLMSFIS--CYTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLPL 241

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           ARR   +  + L +L K Y + + + S H AL D  + + VY
Sbjct: 242 ARRHFETPNHKLITL-KDY-LNLDNNS-HDALEDCLVTNKVY 280


>gi|262199242|ref|YP_003270451.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262082589|gb|ACY18558.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 308

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 10/109 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---SPEALKLHGIT 66
           +VFD+ETTG D + D+IIE+     L     NR +++      R +    P A ++HGI+
Sbjct: 7   LVFDVETTGTDRRRDQIIELCVQFGLGDDAPNRVWRI------RPDVAIEPAAQEVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            + L + P F  +  E  + F       + +N  FD+G + AE +R+ +
Sbjct: 61  MDDLAECPRFPEVADELRELFASATV-LVGYNVSFDIGMLQAEYERLGQ 108


>gi|332140721|ref|YP_004426459.1| ribonuclease T [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550743|gb|AEA97461.1| ribonuclease T [Alteromonas macleodii str. 'Deep ecotype']
          Length = 210

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++  D ++E+ AV + +D       + TF   + P  G    P AL+ +G
Sbjct: 18  VVIDVETAGFNAGTDALLELAAVTVKMDDDGILHPDETFHYHIDPFEGANLEPAALEFNG 77

Query: 65  I-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQRIN-- 114
           I  +  L+     S    +      +       Q +  +AHNA FD  F+NA ++R N  
Sbjct: 78  IDPNCALRGAIEESEAMKDLCKGIRKAQKNAGCQRSVIVAHNATFDQSFVNAAIERCNIK 137

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + P  P    DT S+A       +  L   C+  GI       H AL D+   ++++  M
Sbjct: 138 RTPFHPFVSFDTTSLAGLA--LGQTVLVKACRAAGIAFDQSEAHSALYDAQKTTELFCFM 195

Query: 175 M 175
           +
Sbjct: 196 V 196


>gi|268686367|ref|ZP_06153229.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035]
 gi|268626651|gb|EEZ59051.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035]
          Length = 264

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           M   V D+E+TG +   DR+ E+  V+          + V    N +K  P+   +L GI
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 84  SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 140 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182


>gi|257889197|ref|ZP_05668850.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733]
 gi|257825269|gb|EEV52183.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733]
          Length = 295

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 6/162 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGL   +  I++IGA++     + +R +Q  + P     S    K+ G+  E 
Sbjct: 125 VVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQ-NIKPFRSNISKRITKITGLELED 183

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P+F     +   F +      +AHNA FD+ F+  +L   N +     R+IDTL +
Sbjct: 184 VVNMPTFEDFSPQLMSFIS--CYTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLPL 241

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           ARR   +  + L +L K Y + + + S H AL D  + + VY
Sbjct: 242 ARRHFETPNHKLITL-KDY-LNLDNNS-HDALEDCLVTNKVY 280


>gi|227550341|ref|ZP_03980390.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium
           TX1330]
 gi|257886431|ref|ZP_05666084.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501]
 gi|227180543|gb|EEI61515.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium
           TX1330]
 gi|257822287|gb|EEV49417.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501]
          Length = 297

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 6/162 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGL   +  I++IGA++     + +R +Q  + P     S    K+ G+  E 
Sbjct: 127 VVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQ-NIKPFRSNISKRITKITGLELED 185

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P+F     +   F +      +AHNA FD+ F+  +L   N +     R+IDTL +
Sbjct: 186 VVNMPTFEDFSPQLMSFIS--CYTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLPL 243

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           ARR   +  + L +L K Y + + + S H AL D  + + VY
Sbjct: 244 ARRHFETPNHKLITL-KDY-LNLDNNS-HDALEDCLVTNKVY 282


>gi|293374694|ref|ZP_06621002.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sanguinis PC909]
 gi|292646608|gb|EFF64610.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sanguinis PC909]
          Length = 1528

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 5/130 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  N    +V+D+ETTG  +  D IIEI AV++ + +  +  F  F  P+ RK S + ++
Sbjct: 426 IPLNDATYVVYDVETTGFSTNYDVIIEIAAVKIKNGTIIDE-FSDFANPH-RKLSLKTIE 483

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  I    + + P    +   F ++   ++   +AHNA FD+G +    +R N    D +
Sbjct: 484 LTHILQSDVDNAPELEDVMKRFKEW--SEDCVLVAHNAAFDMGHLEQTYKRFNLGVCD-N 540

Query: 122 RIIDTLSIAR 131
            ++DTL++AR
Sbjct: 541 PVLDTLALAR 550


>gi|30063256|ref|NP_837427.1| exodeoxyribonuclease X [Shigella flexneri 2a str. 2457T]
 gi|56479974|ref|NP_707706.2| exodeoxyribonuclease X [Shigella flexneri 2a str. 301]
 gi|30041508|gb|AAP17236.1| hypothetical protein S1920 [Shigella flexneri 2a str. 2457T]
 gi|56383525|gb|AAN43413.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|281601259|gb|ADA74243.1| Exodeoxyribonuclease 10 [Shigella flexneri 2002017]
 gi|313650662|gb|EFS15064.1| exonuclease family protein [Shigella flexneri 2a str. 2457T]
 gi|332757646|gb|EGJ87979.1| exonuclease family protein [Shigella flexneri 2747-71]
 gi|332758031|gb|EGJ88357.1| exonuclease family protein [Shigella flexneri K-671]
 gi|332766817|gb|EGJ97018.1| exonuclease family protein [Shigella flexneri 2930-71]
 gi|333018617|gb|EGK37911.1| exonuclease family protein [Shigella flexneri K-304]
          Length = 220

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K      + + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSLLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD        +R+   P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFD--------RRVL--PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHR---SKHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGLKYSNMALYKTRKLNVQTPLGLHHHRALYDCYITAALLIDIM 151


>gi|220920536|ref|YP_002495837.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
 gi|219945142|gb|ACL55534.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
          Length = 189

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 10/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR +  D ET   + + D    +G   + D     R  ++   P   + SP  +++HGI 
Sbjct: 1   MRTLAIDFETA--NERRDSACAVGLAWIEDGRVVRREARLIR-PAEMRFSPFNVRVHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E + D P F++  + F        A  +AHNA FD+G + A L        D + +  T
Sbjct: 58  PEDVADAPDFAAAMAPF--LPEIAGALVLAHNASFDIGVLAAALAACGLPQPDYTSLC-T 114

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L +ARR+ P   R  L +L  R GI   H   H A  D+ + ++V +  M
Sbjct: 115 LQLARRQWPGQERYRLPALAARLGIAFRH---HDAGEDAFVCAEVALAAM 161


>gi|325269040|ref|ZP_08135661.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
           multiformis DSM 16608]
 gi|324988661|gb|EGC20623.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
           multiformis DSM 16608]
          Length = 284

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 9/141 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+E TGLD  NDRII+I  ++     K  R   +F+ P G+    E  +L GI+DE 
Sbjct: 10  VIFDLEATGLDLVNDRIIQISFIKAYPDGKEERE-NIFINP-GKPIPSEVTQLTGISDED 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127
           + + P+F     E  D F+    ++   N+ +FDV  +  E  R   D     SR+ID  
Sbjct: 68  VAEAPTFKQKAKELADKFS--GCDFAGFNSNRFDVPMLAEEFLRAGVDFDFTKSRLIDAQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
           +I    H   R +L +  K Y
Sbjct: 126 NIY---HKMERRNLAAAYKFY 143


>gi|302561385|ref|ZP_07313727.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302479003|gb|EFL42096.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 314

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 10/186 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRII      L    +    +   + P   +  P  + +HG+T + L
Sbjct: 12  VVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTTVNP---ERDPGPVWIHGLTSDVL 67

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  + +EF      +    +AHNA FD   I  E  R   +     R+  T++++
Sbjct: 68  EGAPLFKDVAAEFAARL--EGRVLVAHNAVFDWQMIAREYARARGEAPVRQRLC-TIALS 124

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           +  K P   + L SL   +G+    R  H AL D+ +L++ +   +   +        +E
Sbjct: 125 KELKLPLPNHKLESLAAHFGVV--QRRAHHALDDARVLAEAFRPSLRAAAAGGVRLPLHE 182

Query: 190 DRFFKE 195
            R   E
Sbjct: 183 CRPLTE 188


>gi|240016771|ref|ZP_04723311.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA6140]
 gi|240112673|ref|ZP_04727163.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae MS11]
          Length = 255

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           M   V D+E+TG +   DR+ E+  V+          + V    N +K  P+   +L GI
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 74

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 75  SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 131 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173


>gi|149194547|ref|ZP_01871643.1| Exonuclease [Caminibacter mediatlanticus TB-2]
 gi|149135291|gb|EDM23771.1| Exonuclease [Caminibacter mediatlanticus TB-2]
          Length = 204

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 15/173 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT--NRTFQVFLCPNGRKNSPEALKLHGITD 67
           +V D ETTGLD+K D II IGAV ++  +K   ++ F ++     +K S +++K+H IT 
Sbjct: 31  VVIDTETTGLDTKKDEIISIGAV-IVKNNKILLSKKFHIY-VKTTKKISNDSIKIHKITP 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             LK+         EF +F   QN   + +  +FD+  IN   ++     L  +R I+  
Sbjct: 89  TTLKNAVETKEAIYEFLNFI--QNRPIVGYYLEFDIAMINKLTKKYLGIKL-SNRQIEVS 145

Query: 128 SIARRKH----PSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           S+   K     P    DL  +S+ K   + I    KH AL D+ + + +YIK+
Sbjct: 146 SLYYDKKIGIIPQKNVDLRFDSIMKDLNLPIF--KKHNALNDAIMTALIYIKL 196


>gi|269102191|ref|ZP_06154888.1| ribonuclease T [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162089|gb|EEZ40585.1| ribonuclease T [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 221

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 22/184 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D   +     T    + P  G     EAL+ +G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLKMDDDGWLHPATTLHFHVTPFEGAILHKEALEFNG 79

Query: 65  ITDEF------LKDKPSFSSIFSEFWDFFNEQNAEW-----IAHNAKFDVGFINAELQR- 112
           I D F      + +  +   IF +      ++NA+      +AHNA FD  F+ A  +R 
Sbjct: 80  IRDPFSPLRGAVSEDTALKEIFKQIRK--EQKNADCSRAIMVAHNANFDHSFVMAAAERA 137

Query: 113 -INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            + ++P  P    DT +++       +  L   C+   I   ++  H AL D+   ++++
Sbjct: 138 KLKRNPFHPFATFDTAALSGLA--LGQTVLAKACQTANIPFDNKEAHSALYDTERTAELF 195

Query: 172 IKMM 175
            K++
Sbjct: 196 CKIV 199


>gi|240127974|ref|ZP_04740635.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 255

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           M   V D+E+TG +   DR+ E+  V+          + V    N +K  P+   +L GI
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 74

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 75  SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 131 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173


>gi|229084648|ref|ZP_04216916.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-44]
 gi|228698671|gb|EEL51388.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-44]
          Length = 930

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 88/171 (51%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I ++ AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQVAAVVVED-GEILEIFSSFVNPE-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            ++ +K  P F  +     +    Q A ++AHN  FD  F+  EL++     ++  + ID
Sbjct: 62  DEDLVKQAPLFCDVAPMIVELL--QGAYFVAHNVHFDWNFLREELKQAGYGEVNCQK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+ + ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALVTAELFLQFL 167


>gi|310823691|ref|YP_003956049.1| exonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|309396763|gb|ADO74222.1| Exonuclease [Stigmatella aurantiaca DW4/3-1]
          Length = 982

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 17/154 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D+ETTGLD + D +IE+GA+   ++ +  R       P+ R       +L GI D
Sbjct: 10  RHVFLDLETTGLDPRVDEVIELGAL-FFEHGREVRRIARMYAPS-RPLPITIRRLTGIED 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             L  KP F S   E      E    W  +AHNA F+ GF+   L  I    LD   ++ 
Sbjct: 68  AMLAGKPRFGSDLDE----LREALTGWTVVAHNAPFEKGFLPKLLGPIRAPVLDSCELLH 123

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKH 158
            L      HP  S + L ++ +  G  +  RS H
Sbjct: 124 YL------HPELSSHSLEAMMRWAG--LKPRSTH 149


>gi|290961805|ref|YP_003492987.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260651331|emb|CBG74453.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 233

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 15/172 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D + DRI+   AV + D   T      +L   G      A  +HG+TDE L
Sbjct: 3   AFDTETTGVDVETDRIVS-AAVVVQDAPGTRPRVTRWLVNPGVPVPAGATAVHGLTDERL 61

Query: 71  -KDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLD------P 120
            +D    + +  E      EQ       +  NA FD+  ++ EL+R     LD      P
Sbjct: 62  QRDGRWPAPVMEEIARALAEQAVRGRPLVVMNAPFDLTLLDRELRRHRASSLDRWFEATP 121

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            R++D   + +   ++   R  L  LC  Y + +     H A  D+    DV
Sbjct: 122 LRVLDPRVLDKHLDRYRKGRRTLTDLCAHYEVVLD--GAHDAGADAQAAMDV 171


>gi|260440770|ref|ZP_05794586.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI2]
          Length = 255

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           M   V D+E+TG +   DR+ E+  V+          + V    N +K  P+   +L GI
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 74

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 75  SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 131 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173


>gi|240125521|ref|ZP_04738407.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           SK-92-679]
          Length = 255

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           M   V D+E+TG +   DR+ E+  V+          + V    N +K  P+   +L GI
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 74

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 75  SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 131 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173


>gi|269798688|ref|YP_003312588.1| UvrD/REP helicase [Veillonella parvula DSM 2008]
 gi|269095317|gb|ACZ25308.1| UvrD/REP helicase [Veillonella parvula DSM 2008]
          Length = 862

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 6/155 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+E+TG D+  DRII+I A+ + +  +   TF+ F+ P       E  ++HG +D +
Sbjct: 495 VVYDVESTGTDTAQDRIIQIAAIRIDEDGQVLETFERFINPGVPVGQSE--EVHGFSDAY 552

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L++     +I  + +  F+ +NA  + HN  +DV     EL R N    +   I DTL I
Sbjct: 553 LQEHGEEPAIVLQAFKEFS-KNAIIVGHNVNYDVTIFTNELARHNLGNPEFKAIYDTLDI 611

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163
            RR +P+  N  L  L  ++   I H   H A+ D
Sbjct: 612 YRRFYPNLPNHKLGFLASKF--PIHHEPTHNAMDD 644


>gi|89099885|ref|ZP_01172757.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911]
 gi|89085443|gb|EAR64572.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911]
          Length = 934

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 9/160 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + +V D+ETTG  +K  D+II+  AV +++  K    +   L P G++      +L G+ 
Sbjct: 4   KYVVVDLETTGNSAKKGDKIIQFAAV-VMEGGKIIDQYSSLLNP-GKEIPAFIEELTGLN 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  +  +    ++A ++AHN  FD+ F+  EL      P     +IDT
Sbjct: 62  DSMVSDAPVFAEIAPKVMELL--EDAYFVAHNVLFDLSFLQEELLDAGF-PGFYGPVIDT 118

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSH 165
           + +AR   P S +  L+ L  + GI   H   H A  D++
Sbjct: 119 VELARTVLPCSDSYKLSDLSAKEGIM--HDRPHQADSDAY 156


>gi|239998744|ref|ZP_04718668.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae 35/02]
 gi|240014337|ref|ZP_04721250.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI18]
 gi|240080968|ref|ZP_04725511.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA19]
 gi|240121900|ref|ZP_04734862.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID24-1]
 gi|240123269|ref|ZP_04736225.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID332]
 gi|268594593|ref|ZP_06128760.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268597081|ref|ZP_06131248.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
 gi|268547982|gb|EEZ43400.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268550869|gb|EEZ45888.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
          Length = 255

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           M   V D+E+TG +   DR+ E+  V+          + V    N +K  P+   +L GI
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 74

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 75  SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 131 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173


>gi|240117716|ref|ZP_04731778.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID1]
          Length = 255

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           M   V D+E+TG +   DR+ E+  V+          + V    N +K  P+   +L GI
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 74

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 75  SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 131 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173


>gi|229157184|ref|ZP_04285264.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342]
 gi|228626248|gb|EEK82995.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342]
          Length = 315

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 88/167 (52%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P   ++ P+ +  L GIT+ 
Sbjct: 11  VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNP--ERSIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D  +   +   F  F +      +AHNA FD+ F+ + +  ++  P   +++IDT+ 
Sbjct: 68  RVSDARTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLSL-PEPKNKVIDTVF 124

Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++  KH +  + L +L +  GI +   S H A  D    + VY K
Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167


>gi|24379729|ref|NP_721684.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus mutans UA159]
 gi|24377689|gb|AAN58990.1|AE014965_11 putative ATP-dependent DNA helicase; DNA polymerase III, epsilon
           subunit (3'-5' exonuclease) [Streptococcus mutans UA159]
          Length = 820

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 90/175 (51%), Gaps = 10/175 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K   +  V D+E TG  S +  II++G V +++  +  +T+   + P+ +  S   +
Sbjct: 1   MTEKKTRKYAVVDLEATG-ASHSASIIQVGIV-IIENEQIIQTYTTDVNPH-KPLSKAII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GITD  L+  P FS + ++ +   +  +  ++AHN KFD   +   L     + L P
Sbjct: 58  RLTGITDAQLQQAPDFSEVAADIYHLID--DCVFVAHNVKFDANLLAEHLFLEGFELLTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +L +   I +S    H A+ D+   +++++K+
Sbjct: 116 R--VDTVELAQVFYPTFEKYSLGNLTELLKIDLS--DAHTAIADAKATAELFLKL 166


>gi|290580273|ref|YP_003484665.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025]
 gi|254997172|dbj|BAH87773.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025]
          Length = 842

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 90/175 (51%), Gaps = 10/175 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K   +  V D+E TG  S +  II++G V +++  +  +T+   + P+ +  S   +
Sbjct: 23  MTEKKTRKYAVVDLEATG-ASHSASIIQVGIV-IIENEQIIQTYTTDVNPH-KPLSKAII 79

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GITD  L+  P FS + ++ +   +  +  ++AHN KFD   +   L     + L P
Sbjct: 80  RLTGITDAQLQQAPDFSEVAADIYHLID--DCVFVAHNVKFDANLLAEHLFLEGFELLTP 137

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +L +   I +S    H A+ D+   +++++K+
Sbjct: 138 R--VDTVELAQVFYPTFEKYSLGNLTELLKIDLS--DAHTAIADAKATAELFLKL 188


>gi|121997525|ref|YP_001002312.1| ribonuclease T [Halorhodospira halophila SL1]
 gi|121588930|gb|ABM61510.1| RNAse T [Halorhodospira halophila SL1]
          Length = 226

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLC---P-NGRKNSPEALKLH 63
           +V D+ET GL ++ D +++I AV L     T R +  +   C   P  G +  P+AL+L+
Sbjct: 34  VVVDVETGGLQAETDALLQIAAVILRAEEGTGRLYPAETHTCHVQPFEGARIDPKALELN 93

Query: 64  GITDEF-----LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN- 114
           GI  E      + ++ +   +F+             A  + HNA FD+ F+NA + R   
Sbjct: 94  GIDPEHPLRMAVPERDALGKMFNPVRQELRNTGCNRAVLVGHNAFFDLAFLNAAVTRTGF 153

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++    +   +  L    K  GI    +  H A+ D+   ++++  
Sbjct: 154 KRNPFHPFSSFDTATLGGLAY--GQTVLAKAVKAAGIEWDAKEAHSAIYDAEKTAELFCA 211

Query: 174 MM 175
           ++
Sbjct: 212 IV 213


>gi|229155207|ref|ZP_04283319.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           4342]
 gi|228628334|gb|EEK85049.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           4342]
          Length = 934

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L KR+   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKRH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|314055097|ref|YP_004063435.1| putative exonuclease RNase T and DNA polymerase III [Ostreococcus
           tauri virus 2]
 gi|313574988|emb|CBI70001.1| putative exonuclease RNase T and DNA polymerase III [Ostreococcus
           tauri virus 2]
          Length = 447

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 18/143 (12%)

Query: 7   MRKIVFDIETTGL---------------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
           M  I FD ET+GL               +    R + + A       +  +TF   + PN
Sbjct: 5   MNYIAFDFETSGLPRGRRNTKVTHETLSNFDGCRAVSLSAARFSQRGRLIKTFDAIIRPN 64

Query: 52  GRKNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           G +   E++ +HGI++E  L +   F  +F +F +F   +    +AHNA+FD   + +E+
Sbjct: 65  GFQIGEESIAIHGISNEKALSEGRPFPDVFKDFMEFIGPRTKTLVAHNAQFDTSVLQSEM 124

Query: 111 QR--INKDPLDPSRIIDTLSIAR 131
            R  I  + +D   I  TL + R
Sbjct: 125 LRHGIPLEQIDDLVIRCTLEMYR 147


>gi|307327522|ref|ZP_07606708.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
 gi|306886921|gb|EFN17921.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
          Length = 274

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 15/175 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHGIT-DE 68
           FD ETTGLD   DRI++     L+   ++ R    + +L   G     EA K+HGIT D 
Sbjct: 15  FDTETTGLDVFKDRIVQAA---LVGQDRSGREVFREEWLINPGILIPREATKIHGITSDR 71

Query: 69  FLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122
            ++D    +    +      +        +  NA +D+  ++AE QR +  PL   R   
Sbjct: 72  AMEDGQDPAEAIEQITGLLEKALRAGCALVIQNAPYDLALLDAEAQRHSVVPLAERRPVA 131

Query: 123 -IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            ++D + +A+      R+ L +L  R+G+T  +   H A  D+     V  K+M+
Sbjct: 132 PVLDPVMLAKVAKVEGRHSLAALSARFGVT--NPRAHTAYADAVTTLAVLRKLMM 184


>gi|310767562|gb|ADP12512.1| ribonuclease T [Erwinia sp. Ejp617]
          Length = 219

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D+K + ++EI AV L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLGKDDTLHFHVEPFAGSVLLPEALTFNG 79

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF        +     A  +AHNA FD+ F+NA  +R  + 
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   G+       H AL D+   +D++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLAKACHAAGMAFDSAQAHSALYDTLQTADLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|309789846|ref|ZP_07684425.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
 gi|308228150|gb|EFO81799.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
          Length = 230

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 22/179 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFL-CPNGRKNSPEALKLHGITDE 68
           V DIET+GL+ K D ++ IG VE+ +     NR +   +  P G +    ++++HGIT  
Sbjct: 36  VLDIETSGLNHKRDALLAIGLVEIEEGRIHLNRHWYTLVRPPEGLEVDASSIRIHGITRA 95

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTL 127
            L+D P    +  E            + H A+ DV F+N  ++ R     + P  IIDT 
Sbjct: 96  ELEDAPLADVVLPEL--LARLAGRVMVVHVAQVDVSFLNQAMRTRWGAKLVGP--IIDTA 151

Query: 128 SIARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            IA   H             P     L +L  R+G  +    +H AL D+   + +++ 
Sbjct: 152 RIAMSLHETAKILGSVQPDMPMPAIQLRALATRFG--LPSYGEHNALNDALTTAQLFLA 208


>gi|308177924|ref|YP_003917330.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis
           Re117]
 gi|307745387|emb|CBT76359.1| putative DNA polymerase III subunit epsilon [Arthrobacter
           arilaitensis Re117]
          Length = 227

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 23/219 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +K   I FD+ETTG+D+   RI+   +V LLD        + +L   G +    A 
Sbjct: 1   MTEWHKGLAIGFDLETTGVDTNTARIV-TASVVLLDAEGNVVNNREWLVDPGVEIPEAAA 59

Query: 61  KLHGITDEFLKDK--PSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            +HGI+ E  + +  P+  S+  E  +   F  + A  +A NA +D   + +E  R + +
Sbjct: 60  AVHGISTEKARAEGAPAKQSV-EEILNLLKFASEQAPIVAFNASYDFSVLYSEAVRYDLE 118

Query: 117 PLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK- 173
           P  P  +ID   I ++  +    +  L + C+ YG+ + +   H +L D+    +V  + 
Sbjct: 119 PFFPGNVIDPFIIDKQVDRFRKGKRTLAAACEFYGVVLEN--AHTSLADAVACVEVARQL 176

Query: 174 -----------MMVGGSQINFGFKTNEDRFFKEEKKTVP 201
                      M++ G QI +  K   + F    +KT P
Sbjct: 177 GERYPQLQVDPMVLHGWQIGWA-KEQAESFQAYLRKTKP 214


>gi|15606258|ref|NP_213636.1| DNA polymerase III epsilon subunit [Aquifex aeolicus VF5]
 gi|6014995|sp|O67074|DPO3E_AQUAE RecName: Full=DNA polymerase III subunit epsilon
 gi|2983450|gb|AAC07031.1| DNA polymerase III epsilon subunit [Aquifex aeolicus VF5]
          Length = 202

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 12/169 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V D+E TG D +   +I++ AV  ++       F   + P      PE + KL GIT+ 
Sbjct: 20  VVIDLEATGFDVEKSEVIDLAAVR-VEGGIITEKFSTLVYPG--YFIPERIKKLTGITNA 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTL 127
            L  +P+   +  EF +F  +     + H  + D+ FIN   ++   K   +PS  + TL
Sbjct: 77  MLVGQPTIEEVLPEFLEFVGDNIV--VGHFVEQDIKFINKYTKQYRGKKFRNPS--LCTL 132

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +AR+  P   +  L  + + +G   +    H AL D+ L ++++IK++
Sbjct: 133 KLARKVFPGLKKYSLKEIAENFGFETN--GVHRALKDATLTAEIFIKIL 179


>gi|296102681|ref|YP_003612827.1| ribonuclease T [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295057140|gb|ADF61878.1| ribonuclease T [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 216

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 22/195 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEEGWLTPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        E N   A  +AHNA FD  F  A  +R  + 
Sbjct: 80  IDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCSRAIMVAHNATFDHSFTMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   GI       H AL D+   ++++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACITAGIEFDGTQAHSALYDTERTAELFCEI 197

Query: 175 M-----VGGSQINFG 184
           +     +GG  +  G
Sbjct: 198 VNRWKRLGGWPLAMG 212


>gi|320011855|gb|ADW06705.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           flavogriseus ATCC 33331]
          Length = 241

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D + DRI+   A+ + D +        +L   G    P A ++HG+TD+ L
Sbjct: 11  AFDTETTGVDVEEDRIVS-AALVVQDAAGGRLRVTRWLVNPGIPVPPGATEIHGLTDDHL 69

Query: 71  KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR---------INKDP 117
           +    + + +  E      EQ A     +  NA FD+  ++ EL+R         + K P
Sbjct: 70  QRNGRWPAPVVEEIARSLAEQCATGRPLVVMNAPFDLTLLDRELRRHRASSLAGYLGKKP 129

Query: 118 ---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
              LDP R++D      RK    R  L  LC+ YG+T+
Sbjct: 130 LCVLDP-RVLDKHLDRYRK---GRRTLTDLCELYGVTL 163


>gi|239616933|ref|YP_002940255.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239505764|gb|ACR79251.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 180

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 90/180 (50%), Gaps = 13/180 (7%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL-H 63
           M  +V D ETTG    K   +IEI  V + D+      +F   + P  +++ P ++ +  
Sbjct: 1   MEFVVIDTETTGSSPHKGAELIEIAGVVVRDWEIIYEESFNELIKP--KRHVPISITMIT 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI +  L+DK     +   F+DF  ++    +  NA FD+ F++   ++I    L P+  
Sbjct: 59  GINNLMLEDKLPIEIVLPRFYDFVRDRV--LVIQNAPFDLSFLDYFGKKIGIGEL-PNPF 115

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQI 181
           +DT+S++R      R++L+ +  R GI    R  H AL D+   +  +IKM  M+G  +I
Sbjct: 116 VDTISLSRSLF-RGRHNLDIILARLGIFCEDR--HRALGDAVATAKAFIKMVKMIGVEEI 172


>gi|302541826|ref|ZP_07294168.1| putative DNA polymerase III epsilon subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459444|gb|EFL22537.1| putative DNA polymerase III epsilon subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 239

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 20/169 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD+ETTG D +  RI+    VE+       R    +L         +A+ +HGIT+E 
Sbjct: 9   IGFDLETTGTDPRTARIVTAAVVEVRGGEPIGR--HEWLAAPEVPIPDDAVAVHGITNER 66

Query: 70  LKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAEL---------QRINKDP 117
                    +  E  D         A  +A+NA FD+  + AEL         +R+   P
Sbjct: 67  AAAGRPIREVADEIADVLVAHWRAGAPVVAYNAAFDLSLLAAELDRHGLRSLGERLGGAP 126

Query: 118 LDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
             P  ++D  +I R   ++   +  L ++C  YG  ++H   H A  D+
Sbjct: 127 TGP--VVDPYTIDRAVDRYRKGKRTLEAVCGEYG--VAHERAHEAGADA 171


>gi|222151350|ref|YP_002560506.1| hypothetical protein MCCL_1103 [Macrococcus caseolyticus JCSC5402]
 gi|222120475|dbj|BAH17810.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 850

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 10/165 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF- 69
           V DIETTG +  +D II++G + ++   K   T+  F+  N     P  ++     D F 
Sbjct: 7   VVDIETTGNNLDSDEIIQVG-IAIVQNKKIIETYDTFIACNNE--IPAFIQSLTKIDAFD 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P+FS + S      +     ++AHN +FD+ F+             P  IIDT+  
Sbjct: 64  LVDAPNFSHVASHIIKLLD--GCVFVAHNVQFDLRFLQKYFSEAGH-KFQPRYIIDTVDW 120

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +  +PS  R  L S+    GI +S  S H A+ D+   ++V+I+
Sbjct: 121 FKIVYPSLERYQLKSIADDLGIELS--SAHRAIDDAVATAEVFIE 163


>gi|221195007|ref|ZP_03568063.1| putative exonuclease, RNase T and DNA polymerase III [Atopobium
           rimae ATCC 49626]
 gi|221184910|gb|EEE17301.1| putative exonuclease, RNase T and DNA polymerase III [Atopobium
           rimae ATCC 49626]
          Length = 251

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 5/100 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGLD + D II++  ++          F+  +CP  RK  P A +++GIT + 
Sbjct: 24  LCIDTETTGLDPRKDEIIQLSMID----GHGKSIFESLICPPTRKRWPNAQEINGITPKM 79

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           +K KP    +  +  +  N  +   + +N  FD+  + AE
Sbjct: 80  VKGKPELEEVADQVQEAINAADL-IVGYNLPFDISMMEAE 118


>gi|170019811|ref|YP_001724765.1| exodeoxyribonuclease X [Escherichia coli ATCC 8739]
 gi|169754739|gb|ACA77438.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli ATCC
           8739]
          Length = 220

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K  +     + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVKPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|306841731|ref|ZP_07474417.1| DNA polymerase III, epsilon chain [Brucella sp. BO2]
 gi|306288136|gb|EFM59523.1| DNA polymerase III, epsilon chain [Brucella sp. BO2]
          Length = 193

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 6/150 (4%)

Query: 24  DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
           DRII +GAV++       ++  +   P  + +SP+A  +HG  +   + +  F  + +  
Sbjct: 4   DRIITLGAVKIEGDELLTQSLYLIFDPR-KDSSPQAEAIHGFDNWMTRYQDLFHELAAPI 62

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNS 143
             +F+  + E +AHNA+FD+ +I  E ++   D LD   +  T+  ARR        L+ 
Sbjct: 63  RKWFSWAD-EVVAHNAQFDIHYIQREFRKAEVDMLD-QPVYCTMEGARRLWRGDPAKLDH 120

Query: 144 LCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172
              + G+    HR  HGAL D++L + +Y+
Sbjct: 121 CLAKIGLARTGHR--HGALEDAYLTAGLYL 148


>gi|298252829|ref|ZP_06976623.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella
           vaginalis 5-1]
 gi|297533193|gb|EFH72077.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella
           vaginalis 5-1]
          Length = 337

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 20/174 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL------CPNGRKNS---PEAL 60
           +V D ETTGL+SK D+IIEIGAV+ +D       FQ  +        N  KN+    E +
Sbjct: 157 VVIDCETTGLNSKVDKIIEIGAVKFID--GKIEEFQKLININCDSVSNFNKNNFILNEII 214

Query: 61  KLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---D 116
           +L GIT   L+           EF DF   +    + +N +FD+ F+N+ L  +++    
Sbjct: 215 ELTGITSSMLESYGVRLDLALKEFIDFV--EKLPVLGYNVQFDMSFLNSALSSLDERFDH 272

Query: 117 PLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHLL 167
            L  ++I D     +++    +N  L ++   Y I  ++ HR+   A L +HL+
Sbjct: 273 SLSINKIFDISRFVKKEKKFLKNYQLKTVLHEYNIAESVPHRALLDARLTAHLV 326


>gi|251789330|ref|YP_003004051.1| ribonuclease T [Dickeya zeae Ech1591]
 gi|247537951|gb|ACT06572.1| ribonuclease T [Dickeya zeae Ech1591]
          Length = 226

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 22/201 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L +D S   + + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDATLHFHIEPFEGAILRPEALAFNG 79

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +   IF        EQ+   A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPTNPLRGAVSEYEALHEIFKSVRKGIKEQDCNRAIIVAHNATFDHSFLMAAAERCGLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C    I       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACIAADIPFDASQAHSALYDTERTAQLFCEL 197

Query: 175 M-----VGGSQINFGFKTNED 190
           +     +GG  +  G  TN +
Sbjct: 198 VNRWKRMGGWPLASGIDTNTE 218


>gi|210634765|ref|ZP_03298293.1| hypothetical protein COLSTE_02220 [Collinsella stercoris DSM 13279]
 gi|210158705|gb|EEA89676.1| hypothetical protein COLSTE_02220 [Collinsella stercoris DSM 13279]
          Length = 975

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 10/149 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGL  + + +IEI A  L       R F  F+ P+    + E  +L  IT+  
Sbjct: 48  VVLDTETTGLSHRENELIEIAAARLRGREVVER-FDTFIKPHALIPA-EITELTSITNAD 105

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   PS     +   DF     A  IAHNA FD GFI A    ++         ID+L++
Sbjct: 106 VAHAPSAEEAVARLADFVG--GAPVIAHNAAFDRGFIEA----VSGGAEVTDIWIDSLAL 159

Query: 130 ARRKHPS-SRNDLNSLCKRYGIT-ISHRS 156
           +R   P  S + L S+ + +G + +SHR+
Sbjct: 160 SRIALPRLSSHKLASMAELFGCSGVSHRA 188


>gi|152992669|ref|YP_001358390.1| exonuclease [Sulfurovum sp. NBC37-1]
 gi|151424530|dbj|BAF72033.1| exonuclease [Sulfurovum sp. NBC37-1]
          Length = 244

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 8/105 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           + ++FD ETTG + + DRII+IGA  ++ +SK     +VF  LC      S EA+++H I
Sbjct: 3   KYVLFDTETTG-NQEADRIIQIGA--MIVHSKDE--IEVFDELCSTQVPISIEAMEVHNI 57

Query: 66  TDEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           T + +  KP++S + F++     N      IAHN  FD+G +  E
Sbjct: 58  TPDVIAGKPTYSETAFAKRVQELNTTENYLIAHNISFDLGMLEKE 102


>gi|313894242|ref|ZP_07827807.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441066|gb|EFR59493.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 862

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 6/155 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+E+TG D+  DRII+I A+ + +  +   TF+ F+ P       E  ++HG +D +
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLETFERFINPGVPVGQSE--EVHGFSDAY 552

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L++     +I  + +  F+ +NA  + HN  +DV     EL R N    +   I DTL I
Sbjct: 553 LQEHGEEPAIVLQAFKEFS-KNAIIVGHNVNYDVTIFTNELARHNLGNPEFKAIYDTLDI 611

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163
            RR +P+  N  L  L   +   I H   H A+ D
Sbjct: 612 YRRFYPNLPNHKLGFLASEF--PIHHEPTHNAMDD 644


>gi|110833585|ref|YP_692444.1| ribonuclease T [Alcanivorax borkumensis SK2]
 gi|110646696|emb|CAL16172.1| Ribonuclease T [Alcanivorax borkumensis SK2]
          Length = 228

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 19/190 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRT-----FQVFLCPNGRKN 55
           +R      +V D+ET G +S+ D ++EI AV + +D     R      F V   P G   
Sbjct: 16  LRFRGFLPVVIDVETGGFNSQTDALLEIAAVLIEMDAQGNLRPSTRIQFHVDPFP-GANL 74

Query: 56  SPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFIN 107
              AL   GI         + ++ +   +F        +     A  + HN+ FD GF+N
Sbjct: 75  EQAALDFTGIDPNNPLRGAVPEETALKGVFDPVRKAIKQHACSRAVLVGHNSFFDQGFLN 134

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A   R  I ++P  P    DT ++A   +   +  L   C+  GI  S R  H AL D+ 
Sbjct: 135 AATDRTDIKRNPFHPFSSFDTATLAGLVY--GQTVLAKACEAAGIRFSQREAHSALYDAT 192

Query: 166 LLSDVYIKMM 175
             ++++  M+
Sbjct: 193 RTAELFCSMV 202


>gi|158313649|ref|YP_001506157.1| hypothetical protein Franean1_1813 [Frankia sp. EAN1pec]
 gi|158109054|gb|ABW11251.1| DNA polymerase III, epsilon subunit [Frankia sp. EAN1pec]
          Length = 603

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 80/197 (40%), Gaps = 38/197 (19%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV---------ELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +V D+ETTG       I EIGAV         E+    + +     F+            
Sbjct: 30  VVVDLETTGGSPATSEITEIGAVRVRGGQILGEMSSLVRPSAPIPAFIS----------- 78

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GIT   +   P    +   F +F   + A  +AHNA FD+GF+ A        P   
Sbjct: 79  VLTGITGAMVATAPGIGEVVPTFLEF--ARGAVLVAHNAPFDLGFLRAAATACGY-PAPA 135

Query: 121 SRIIDTLSIARRKHPSSRND-----LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DT+ IARR    SR++     L+SL   +G   + +  H AL D+    DV   + 
Sbjct: 136 WEHLDTVRIARRV--ISRDETRDCRLSSLAALFG--SATQPNHRALADARATVDVLHGLF 191

Query: 176 --VGGSQINFGFKTNED 190
             +G    N G  T ED
Sbjct: 192 ERLG----NLGVTTIED 204


>gi|220921028|ref|YP_002496329.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
 gi|219945634|gb|ACL56026.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
          Length = 222

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 10/172 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +  D+E TGL ++ DRI+  GAV      LL  S       +   P  R + P A  +
Sbjct: 19  RLLAIDVEATGLAAR-DRIVSFGAVALDTASLLGPSPAPTCHHLIFDPQ-RVSHPRAEAV 76

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG  D  L+ +   +   +       + +   +AHNA FD G +  E     +     +R
Sbjct: 77  HGYDDWLLRHQDPAALHLNAIAALLGQADLI-VAHNAAFDFGLLQREFAAAGRP-ALAAR 134

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              TL   RR+  +    L+++C+R  +  +   +HGAL D+ L   VY+ +
Sbjct: 135 TYCTLEAYRRRGEAGPATLDAVCRRVRLQRTG-ERHGALEDAWLALRVYLWL 185


>gi|24374295|ref|NP_718338.1| ribonuclease T [Shewanella oneidensis MR-1]
 gi|54036332|sp|Q8EDJ2|RNT_SHEON RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|24348836|gb|AAN55782.1|AE015715_1 ribonuclease T [Shewanella oneidensis MR-1]
          Length = 222

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G +S+ D ++EI AV LL          ++T    + P  G    PEAL  +
Sbjct: 20  VVIDVETAGFNSQTDALLEI-AVTLLKMDDEGLLGIDKTLHFHIEPFEGANLEPEALAFN 78

Query: 64  GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113
           GI  T+     + +K +F  IF          +      +AHNA FD GF++  ++R  +
Sbjct: 79  GIDPTNPLRGAVSEKDAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT ++A          L   C   GI   ++  H AL D+   ++++  
Sbjct: 139 KRSPFHPFATFDTATLAGLA--IGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCY 196

Query: 174 MM 175
           ++
Sbjct: 197 IV 198


>gi|115452527|ref|NP_001049864.1| Os03g0301400 [Oryza sativa Japonica Group]
 gi|108707691|gb|ABF95486.1| exonuclease family protein, expressed [Oryza sativa Japonica Group]
 gi|113548335|dbj|BAF11778.1| Os03g0301400 [Oryza sativa Japonica Group]
 gi|215678888|dbj|BAG95325.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 313

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 81/179 (45%), Gaps = 21/179 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKLHGITDE 68
           +VFDIETTG   + +RIIE    +L+     N T Q  + P    KN+     +HGI+  
Sbjct: 114 LVFDIETTGFSRRYERIIEFAVRDLM--GGKNSTIQTLINPEREIKNA----YVHGISSS 167

Query: 69  FL--KDKPSFSSIFSEFWDF-FNEQNAE----WIAHNAK-FDVGFINAELQRINKDPLDP 120
            +   D P F         +  + Q A+    W+AHN + FDV F+  E QR   +    
Sbjct: 168 MVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGD 227

Query: 121 SRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DTL IAR+   S    L S     L + Y I ++  S H A+ D   L  V  K+
Sbjct: 228 WLFVDTLPIARQLIGSDGEKLKSVSLDNLREHYKIPLAG-SAHRAMQDVITLCYVLQKL 285


>gi|254386412|ref|ZP_05001717.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
 gi|194345262|gb|EDX26228.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
          Length = 334

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 10/162 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL ++ DRI+      L         +   + P   +  P  + +HG+T + L
Sbjct: 33  VVDVETTGL-AREDRIVSAAVYRLDAQGNVEDHWYTLVNP---QRDPGPVWIHGLTSDML 88

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D P F  I  EF     ++    +AHNA FD   I  E  R  +      R+  T++++
Sbjct: 89  QDAPLFKDIAGEFAGRLADRVL--VAHNAIFDWQMIAREYARAEETAPVRQRLC-TIALS 145

Query: 131 RRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +  + P   + L SL   +G+ +  R+ H AL D+ +L++ +
Sbjct: 146 KELNLPLPNHKLESLAAHFGV-VQQRAHH-ALDDARVLAEAF 185


>gi|120555417|ref|YP_959768.1| ribonuclease T [Marinobacter aquaeolei VT8]
 gi|166228568|sp|A1U3L2|RNT_MARAV RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|120325266|gb|ABM19581.1| RNAse T [Marinobacter aquaeolei VT8]
          Length = 221

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++EI AV L      + +   T    + P  G      AL   G
Sbjct: 21  VVVDVETAGFNPERDALLEIAAVMLTMDEDGWLRRGETHVQQIDPFEGANLEQSALDFTG 80

Query: 65  ITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I       E + ++   S IFS       E +   A  + HNA FD  F+ A   R  I 
Sbjct: 81  IDPWNPEREAVPEREGLSEIFSPIRKAVKEHDCKRAVLVGHNATFDHNFVFAAALRADIK 140

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +      L   CK  GI  S++  H A  D+   +D++  +
Sbjct: 141 RNPFHPFSTFDTATLAGLAY--GHTVLAQACKLAGIPFSNKEAHSAAYDAEKTADLFCGI 198

Query: 175 M 175
           +
Sbjct: 199 V 199


>gi|34541463|ref|NP_905942.1| exonuclease [Porphyromonas gingivalis W83]
 gi|34397780|gb|AAQ66841.1| exonuclease [Porphyromonas gingivalis W83]
          Length = 259

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 24/171 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I FD+ETTG+D   DRI+EI  ++++ D S+  +T ++      R   PE+  +HGI DE
Sbjct: 10  IFFDLETTGVDLVRDRIVEISILKVMPDGSEECKTRRI---NPERPIPPESTAIHGIRDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIA-------HNAKFDVGFINAELQRINKD-PLDP 120
            +KD P F S+            A+WI        ++ +FDV  +  E  R   D  L  
Sbjct: 67  DVKDCPPFRSVAKSL--------AQWIEGCDLAGFNSTRFDVPMLVEEFLRAGVDIDLRH 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            ++ID  +I  +  P +         R+    +  + H A  D+    DV+
Sbjct: 119 RKLIDVQTIFHKMEPRTL----EAATRFYCNRTLENAHSAEADTRATYDVF 165


>gi|328881521|emb|CCA54760.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC
           10712]
          Length = 330

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 10/186 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRI+      L         +   + P   +  P  + +HG+T + L
Sbjct: 23  VVDVETTGL-ARDDRIVSAAVYRLDAQGNVEDHWYTLVNP---ERDPGPVWIHGLTTDVL 78

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P F  I +EF    + +    +AHNA FD   I  E  R         R+  T+++A
Sbjct: 79  AGAPLFPEIAAEFAARLDGRVL--VAHNAMFDWQMIAREYARAESAAPVRQRLC-TIALA 135

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           +    P   + L SL   +G+    +  H AL D+ +L++ +   +   ++ N      E
Sbjct: 136 KELSLPLPNHKLESLAAHFGVV--QQRAHNALDDARVLAEAFRPSLHAAAERNVRLPLLE 193

Query: 190 DRFFKE 195
            R   E
Sbjct: 194 CRPLTE 199


>gi|325843612|ref|ZP_08168008.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sp. HGF1]
 gi|325489298|gb|EGC91675.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sp. HGF1]
          Length = 1528

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 5/130 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  N    +V+D+ETTG  +  D IIEI AV++ + +  +  F  F  P+ RK S + ++
Sbjct: 426 IPLNDATYVVYDVETTGFSTNYDVIIEIAAVKIKNGTIIDE-FSDFANPH-RKLSLKTIE 483

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  I    + + P    +   F ++   ++   +AHNA FD+G +    +R N    D +
Sbjct: 484 LTHILQSDVDNAPELEDVMKRFKEW--SEDCILVAHNAAFDMGHLEQTYKRFNLGVCD-N 540

Query: 122 RIIDTLSIAR 131
            ++DTL++AR
Sbjct: 541 PVLDTLALAR 550


>gi|118616866|ref|YP_905198.1| DNA polymerase [Mycobacterium ulcerans Agy99]
 gi|118568976|gb|ABL03727.1| DNA polymerase [Mycobacterium ulcerans Agy99]
          Length = 500

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 110/252 (43%), Gaps = 26/252 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETTG  ++ DR++E+G V L         +   + P+    + E    HGI    +
Sbjct: 100 VLDFETTGFAAEYDRVVEVGLVLLSAEGDIEDEWSTLINPHRDVGATER---HGIRARDV 156

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTLS 128
              P+F +I        + +   ++AHN  FD  F+ AEL+R    PLD   +  + T+ 
Sbjct: 157 LGAPAFEAIIPRL--LRDLRGRVFVAHNVNFDQRFLLAELRRAGV-PLDNPWLTGLCTMR 213

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV--GGSQINFGFK 186
            A R  P++   L   C   G+ ++    H AL D+   + + +K ++   GS   +  +
Sbjct: 214 WAGRLLPAASRKLPDCCDAAGVFLT--DAHRALADARATASL-LKYLIDHCGSPPPWAKE 270

Query: 187 TNEDRFFKEEKKTVPNISLLKR-------DKP---LFTRITKEELDEHDKTIQT---LGK 233
            +    F+  +   P + L+ R        +P      RI      E D  +++   + +
Sbjct: 271 IDGAEDFEWPQVAGPEVRLVTRAAWGAAPPRPPAGWLDRIVARMPHEDDPRVESYLEILE 330

Query: 234 NAIWDRYISSNQ 245
           +A+ D Y+S ++
Sbjct: 331 SALLDCYLSCHE 342


>gi|117920981|ref|YP_870173.1| ribonuclease T [Shewanella sp. ANA-3]
 gi|166200021|sp|A0KY98|RNT_SHESA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|117613313|gb|ABK48767.1| RNAse T [Shewanella sp. ANA-3]
          Length = 222

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G +S+ D ++EI AV LL          ++T    + P  G    PEAL  +
Sbjct: 20  VVIDVETAGFNSQTDALLEI-AVTLLKMDDEGLLGIDKTLHFNIEPFEGANLEPEALAFN 78

Query: 64  GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113
           GI  T+     + +K +F  IF          +      +AHNA FD GF++  ++R  +
Sbjct: 79  GIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT ++A          L   C   GI   ++  H AL D+   ++++  
Sbjct: 139 KRSPFHPFATFDTATLAGLA--IGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCH 196

Query: 174 MM 175
           ++
Sbjct: 197 IV 198


>gi|311279484|ref|YP_003941715.1| ribonuclease T [Enterobacter cloacae SCF1]
 gi|308748679|gb|ADO48431.1| ribonuclease T [Enterobacter cloacae SCF1]
          Length = 217

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++E+ A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAITLKMDEQGWLMPDTTLHFHVEPFEGANLMPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +QN   A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPSNPLRGAVSEYDALHAIFKAVRKGIKDQNCNRAIMVAHNATFDHSFVMAAAERAGLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACIAAGMAFDGAQAHSALYDTEQTAQLFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|308234672|ref|ZP_07665409.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis ATCC
           14018]
 gi|311114561|ref|YP_003985782.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Gardnerella vaginalis ATCC 14019]
 gi|310946055|gb|ADP38759.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Gardnerella vaginalis ATCC 14019]
          Length = 359

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 20/188 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL------CPNGRK 54
            I K     +V D ETTGL+SK D+IIEIGAV+ +D       FQ  +        N  K
Sbjct: 170 FIGKTSKNFVVIDCETTGLNSKVDKIIEIGAVKFIDGKI--EEFQKLININCDSVSNFNK 227

Query: 55  NS---PEALKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           N+    E ++L GIT   L+           EF DF  +     + +N  FD+GF N+ L
Sbjct: 228 NNFIPNEIIELTGITSNMLESYGVGLDLALREFIDFVGK--LPLLGYNVSFDIGFFNSAL 285

Query: 111 QRINK---DPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHL 166
             +++        +++ID     +      +N  L ++   Y   IS    H ALLD+ L
Sbjct: 286 FSLDEKLSSAFSVNKVIDISRFVKHDRRFLKNYQLKTVLHEYN--ISESVPHRALLDARL 343

Query: 167 LSDVYIKM 174
            + + + +
Sbjct: 344 TARLVLNL 351


>gi|157364228|ref|YP_001470995.1| DNA polymerase III, epsilon subunit [Thermotoga lettingae TMO]
 gi|157314832|gb|ABV33931.1| DNA polymerase III, epsilon subunit [Thermotoga lettingae TMO]
          Length = 188

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 14/175 (8%)

Query: 12  FDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
            D ETTG+D  N DRI+E+  V +       R+    L  N +   P  + K+H IT+E 
Sbjct: 11  MDTETTGIDPMNGDRIVEVAIVPVYKGRILYRSIYHTLV-NPKIRIPATIEKIHRITNED 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTLS 128
           +++ P+   +F +   F   + +  I H A+FD+ FI+   + I   P  PS   IDT  
Sbjct: 70  IENAPTIEQVFGQMRSFM--RRSIMIFHRAEFDLTFIDISAKEIGIFP--PSIDYIDTRE 125

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQI 181
           I+       +  L+ L +R+G     +  H AL D+   + +++KM   + GSQI
Sbjct: 126 ISEIIF-GEKKALSWLAERFGF---EKPNHRALTDAITTAKLFLKMTRKLAGSQI 176


>gi|148827473|ref|YP_001292226.1| ribonuclease T [Haemophilus influenzae PittGG]
 gi|166228566|sp|A5UGD7|RNT_HAEIG RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|148718715|gb|ABQ99842.1| ribonuclease T [Haemophilus influenzae PittGG]
          Length = 229

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 20/190 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L +D   Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73

Query: 56  SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S  +  +  +            Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELNAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVM 133

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R  + ++P  P  + DT S+A       +  L   C+   I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMM 175
             + ++  M+
Sbjct: 192 RTAKLFCYMV 201


>gi|327313528|ref|YP_004328965.1| exonuclease [Prevotella denticola F0289]
 gi|326944167|gb|AEA20052.1| exonuclease [Prevotella denticola F0289]
          Length = 284

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 9/141 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGLD  NDRII+I  +++L   K  R   +F+ P  +    E  +L GI+ + 
Sbjct: 10  VVFDLETTGLDLVNDRIIQISFIKVLPDGKEERE-NIFINPE-KPIPTEVTQLTGISHKD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127
           + D P+F     E  D F     ++   N+ +FDV  +  E  R   D     SR+ID  
Sbjct: 68  VADAPTFRQKAKELADRF--AGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFSKSRLIDAQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
           +I    H   R +L +  K Y
Sbjct: 126 NIY---HKMERRNLAAAYKFY 143


>gi|15607062|ref|NP_214444.1| hypothetical protein aq_2108 [Aquifex aeolicus VF5]
 gi|2984321|gb|AAC07843.1| putative protein [Aquifex aeolicus VF5]
          Length = 210

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 89/172 (51%), Gaps = 16/172 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL--LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +VFD E T LD K  +++ IGAVE+  L+   +   +++      + +  +A ++HGI
Sbjct: 36  RFVVFDCEATELDVKKAKLLSIGAVEVKNLEIDLSKSFYEIL-----KSDEIKAAEIHGI 90

Query: 66  TDEFLKDKPSFSSIFSE-FWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           T E   D   +     E  +DF    + +  + +  KFDV  +     +  + P+   + 
Sbjct: 91  TRE---DVEKYGKEPKEVIYDFLKYIKGSVLVGYYVKFDVSLVEKYSIKYFQYPIINYK- 146

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +D  S  +R++ S R+ L+ L K  G+ I  R++H AL D+++ + +++K +
Sbjct: 147 LDLFSFVKREYQSGRS-LDDLMKELGVEI--RARHNALEDAYITALLFLKYV 195


>gi|289435248|ref|YP_003465120.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171492|emb|CBH28036.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 928

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 11/165 (6%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R IV D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  ++ L GI
Sbjct: 5   RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYATFLNPE--KPIPAFIQELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +KD P F  +          ++  ++AHN  FD  F+  E+ R     L   + +D
Sbjct: 62  SPKDVKDAPLFEDVAPIIAGLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           T+ +AR  +P      L  L   +G  + H   H A  D+ + +D
Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHQADSDAEVTAD 161


>gi|297161567|gb|ADI11279.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
           BCW-1]
          Length = 324

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 10/162 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRI+     +L         +   + P   +  P  + +HG+T + L
Sbjct: 24  VVDVETTGL-ARDDRIVSAAVYQLDARGAVQDHWYTLVNP---QRDPGPVWIHGLTSDTL 79

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P FS I  E     + +    +AHNA FD   +  E  R         R+  T++++
Sbjct: 80  ADAPLFSEIADELAQHLDGRVL--VAHNAVFDWSMLAREYARAGSAAPVRQRLC-TIALS 136

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +    P   + L SL   YG+ +  R+ H AL D+ +L++ +
Sbjct: 137 KELGLPLPNHKLESLAAHYGV-VQERAHH-ALDDARVLAETF 176


>gi|190573537|ref|YP_001971382.1| ribonuclease T [Stenotrophomonas maltophilia K279a]
 gi|190011459|emb|CAQ45077.1| putative ribonuclease T [Stenotrophomonas maltophilia K279a]
          Length = 216

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 19/171 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ET G DS+ + ++EI AV +      L Y     +  V +   G +  P++L++ 
Sbjct: 33  VVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHV-VPAEGLEIDPKSLEVT 91

Query: 64  GITDEFL-----KDKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +       ++K +   IF+        +  Q A  + HNA FD+GF+NA + R   
Sbjct: 92  GIILDHPFRLAKEEKAALDHIFTPVRAAMKKYGCQRAILVGHNAHFDLGFVNAAVARTGH 151

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            ++P  P  + DT+++A   +   +  L       G+       H A+ D+
Sbjct: 152 KRNPFHPFSVFDTVTLAGIAY--GQTVLARAATAAGLGWDANEAHSAVYDT 200


>gi|119896359|ref|YP_931572.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
 gi|119668772|emb|CAL92685.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 231

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           V D ETTG+  ++  R  EI  V + +    +R +Q  +  N   + P E   L GIT+ 
Sbjct: 33  VIDFETTGMAPEHGARPTEIAVVLVRNGCVIDR-YQSLM--NAGVHVPYEIQALTGITNA 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P  + + ++  DF        +AHNA FD  F +AEL R+ +     +  + +L 
Sbjct: 90  MVRAAPPLAQVMAQAADFVGSH--ALVAHNAAFDRKFWDAELDRLGRR--READFVCSLL 145

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++RR  P S N  L +L +  G+  S R  H AL D+   + ++ ++
Sbjct: 146 LSRRVFPDSPNHKLGTLVRTLGLPASGRF-HRALADAEATAQLFARI 191


>gi|291544952|emb|CBL18061.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Ruminococcus sp. 18P13]
          Length = 176

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 25/180 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA------LKLH 63
           IVFD+ET   +  NDR+  IG   + D       F +          PE        KL 
Sbjct: 5   IVFDVETP--NRSNDRMSAIGISAIKDNKIVANYFSLV--------DPETHFDYFNTKLT 54

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI--AHNAKFDVGFINAELQRINKDPLDPS 121
           GI  + +K  P+F+    E W   +   ++ I  AHNA F++  + A L+         +
Sbjct: 55  GIDADKVKGAPNFA----ELWKKIDPIMSKGILVAHNAVFNMSVLRACLRDYGISWKPTA 110

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           + +  + I RR  P  +++LN +C  YGI + H   H A  DSH  +++ ++ +  G  +
Sbjct: 111 KYLCMVRIGRRVLPDMKHNLNVMCDHYGIALDH---HQADSDSHACAEILLRYIESGIDV 167


>gi|239917363|ref|YP_002956921.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Micrococcus luteus NCTC 2665]
 gi|281414154|ref|ZP_06245896.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Micrococcus luteus NCTC 2665]
 gi|239838570|gb|ACS30367.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Micrococcus luteus NCTC 2665]
          Length = 381

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 29  IGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87
           +GAV + D    +R   +   P G  +  P  +++HGIT++ + D P F+ ++ E  DF 
Sbjct: 31  VGAVRVRDGVMVDRAEWLIRPPVGFDRFDPRNVRIHGITEDRVLDAPRFAQVYDELADFV 90

Query: 88  NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR 147
                   AHNA FDVG I + L+   +D +     + TL +ARR +      L S  + 
Sbjct: 91  GTDV--LAAHNAGFDVGVIESGLEVSGRD-VPGLEFVCTLVLARRVYDLPSYALPSAARE 147

Query: 148 YGIT 151
            G T
Sbjct: 148 AGFT 151


>gi|222624763|gb|EEE58895.1| hypothetical protein OsJ_10524 [Oryza sativa Japonica Group]
          Length = 901

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 81/179 (45%), Gaps = 21/179 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKLHGITDE 68
           +VFDIETTG   + +RIIE    +L+     N T Q  + P    KN+     +HGI+  
Sbjct: 702 LVFDIETTGFSRRYERIIEFAVRDLM--GGKNSTIQTLINPEREIKNA----YVHGISSS 755

Query: 69  FL--KDKPSFSSIFSEFWDF-FNEQNAE----WIAHNAK-FDVGFINAELQRINKDPLDP 120
            +   D P F         +  + Q A+    W+AHN + FDV F+  E QR   +    
Sbjct: 756 MVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGD 815

Query: 121 SRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DTL IAR+   S    L S     L + Y I ++  S H A+ D   L  V  K+
Sbjct: 816 WLFVDTLPIARQLIGSDGEKLKSVSLDNLREHYKIPLAG-SAHRAMQDVITLCYVLQKL 873


>gi|297156451|gb|ADI06163.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
           BCW-1]
          Length = 254

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 25/171 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD+ETTG D    RI+    VE+       R  + +L   G     +A+ +HGIT E+
Sbjct: 9   IGFDLETTGTDPGEARIVTAAVVEVRGGEPVGR--REWLADPGVTIPDDAVAVHGITTEW 66

Query: 70  --LKDKPS------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118
              + +PS       + +    W    +  A  +A+NA FD+  + AEL+R     L   
Sbjct: 67  AAAEGRPSREVADEIADVLVAHW----QAGAPVVAYNAAFDLSLLAAELRRHGLPSLGER 122

Query: 119 ----DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
               +   ++D  +I R   ++   +  L ++C  YG+   H   H A  D
Sbjct: 123 LGGAETGPVVDPYTIDRAVDRYRKGKRTLEAVCGEYGVV--HERAHDAGAD 171


>gi|293411964|ref|ZP_06654689.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469519|gb|EFF12008.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 185

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 13  DIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFL 70
           DIE+TGLD     +IIEI A+   +         + +  N R+N  P+A  +HGI+ E L
Sbjct: 9   DIESTGLDFLAGHKIIEI-AITRYELETQRHIDSLEMRFNPRRNIDPKAQAVHGISLEQL 67

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRIN-KDPLDPSRIIDT-L 127
             +P  S+  SE   +    +A WIAHN + FD+ FI  E      + P  P  +IDT L
Sbjct: 68  AAEPLLSNHASEIGAYMGACSA-WIAHNGEAFDIPFIRHEFSGYGVRLPEVP--VIDTML 124

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           S         R  L  L    G    H   H AL D++L+   + K
Sbjct: 125 SGLWATEDGKRPRLEELAFSLGFIYDHAKAHSALYDTNLMMQCFFK 170


>gi|154487175|ref|ZP_02028582.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis
           L2-32]
 gi|154085038|gb|EDN84083.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis
           L2-32]
          Length = 261

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 10/151 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +  DIETTGL  ++ RIIE+GAV +    K     Q+    N +   P  + ++ GITD 
Sbjct: 100 VAVDIETTGL-GRDARIIELGAVRIRHGRKVASYSQLV---NPQIPIPAKVTQITGITDR 155

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
            +K KP+      +F+ F       WI HN  +FD+  I  E QR+     D S   DT+
Sbjct: 156 NVKGKPTIDKALPKFYAFCGRDT--WIGHNIRRFDIPVIAREAQRVGAGMPDVS-FYDTM 212

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSK 157
            +++   P    + +  L + +GI  + R +
Sbjct: 213 ELSQALLPQLDHHRVVDLIRYFGIAKTERHR 243


>gi|145628675|ref|ZP_01784475.1| ribonuclease T [Haemophilus influenzae 22.1-21]
 gi|145638764|ref|ZP_01794373.1| ribonuclease T [Haemophilus influenzae PittII]
 gi|144979145|gb|EDJ88831.1| ribonuclease T [Haemophilus influenzae 22.1-21]
 gi|145272359|gb|EDK12267.1| ribonuclease T [Haemophilus influenzae PittII]
 gi|309750254|gb|ADO80238.1| Ribonuclease T [Haemophilus influenzae R2866]
          Length = 229

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 20/190 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L +D   Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73

Query: 56  SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +            Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRRQKDADCQRSIIVAHNAAFDQSFVM 133

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R  + ++P  P  + DT S+A       +  L   C+   I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMM 175
             + ++  M+
Sbjct: 192 RTAKLFCYMV 201


>gi|313632670|gb|EFR99647.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           seeligeri FSL N1-067]
          Length = 928

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 11/165 (6%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R IV D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  ++ L GI
Sbjct: 5   RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYATFLNPE--KPIPAFIQELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +KD P F  +          ++  ++AHN  FD  F+  E+ R     L   + +D
Sbjct: 62  SPKDVKDAPLFEDVAPIIAGLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           T+ +AR  +P      L  L   +G  + H   H A  D+ + +D
Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHQADSDAEVTAD 161


>gi|322384417|ref|ZP_08058103.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321150775|gb|EFX44235.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 204

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 15/155 (9%)

Query: 7   MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLH 63
           MR+I  VFD+ETTGLD   D+I EI A+   D  +      V +  N G K +PE + L 
Sbjct: 1   MREIYTVFDLETTGLDPTKDQITEIAAIR-TDLIREYGRLDVRITKNSGTKLTPEIINLT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI +  ++              F +   +  +AH+A FD+ F+   L       ++PS  
Sbjct: 60  GINESMMRGGIPEELAIPLLACFMS--GSIVVAHHAPFDLSFLARYL-------VEPSSF 110

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITIS--HRS 156
           + T  +++   P     L ++ +R GI ++  HR+
Sbjct: 111 VCTRVLSKLVEPGESASLAAVAERRGIELTGHHRA 145


>gi|229016898|ref|ZP_04173826.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1273]
 gi|229023104|ref|ZP_04179618.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1272]
 gi|228738250|gb|EEL88732.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1272]
 gi|228744459|gb|EEL94533.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1273]
          Length = 934

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEVHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++I+ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFIQFL 167


>gi|297243541|ref|ZP_06927472.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella
           vaginalis AMD]
 gi|296888292|gb|EFH27033.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella
           vaginalis AMD]
          Length = 338

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 20/174 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL------CPNGRKNS---PEAL 60
           +V D ETTGL+SK D+IIEIGAV+ +D       FQ  +        N  KN+    E +
Sbjct: 158 VVIDCETTGLNSKVDKIIEIGAVKFID--GKIEEFQKLININCDSVSNFNKNNFIPNEII 215

Query: 61  KLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---D 116
           +L GIT   L+           EF DF   +    + +N +FD+ F+N+ L  +++    
Sbjct: 216 ELTGITSNMLESYGVRLDLALKEFIDFV--EKLPVLGYNVQFDMSFLNSALSSLDERFDH 273

Query: 117 PLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHLL 167
            L  ++I D     +++    +N  L ++   Y I  ++ HR+   A L +HL+
Sbjct: 274 SLSINKIFDISRFVKKEKKFLKNYKLKTVLHEYNIAESVPHRALLDARLTAHLV 327


>gi|326314849|ref|YP_004232521.1| DNA-directed DNA polymerase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323371685|gb|ADX43954.1| DNA-directed DNA polymerase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 222

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 8/151 (5%)

Query: 8   RKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+  S+  R  E+ A+ L++  +    FQ  +   G    P  ++L GIT
Sbjct: 5   RIAVIDFETTGMTPSQGARATEV-AIVLMEEGRPVDRFQSLM-KTGAWLPPFIVQLTGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L   P   S+  E   F    +A  +AHNA FD  F  AEL R   D   P     T
Sbjct: 63  PAMLDTAPPAESVMREAARFVG--DAPMVAHNASFDSRFWAAELAR--ADLPSPHAFACT 118

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRS 156
           + ++RR +P ++ + L  +    G+  + R+
Sbjct: 119 VLLSRRLYPEATSHQLGRIVAHLGLPPAARA 149


>gi|16272277|ref|NP_438489.1| ribonuclease T [Haemophilus influenzae Rd KW20]
 gi|260581209|ref|ZP_05849028.1| ribonuclease T [Haemophilus influenzae RdAW]
 gi|1173107|sp|P44639|RNT_HAEIN RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|1573293|gb|AAC21987.1| ribonuclease T (rnt) [Haemophilus influenzae Rd KW20]
 gi|260092134|gb|EEW76078.1| ribonuclease T [Haemophilus influenzae RdAW]
          Length = 229

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 20/190 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L +D   Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73

Query: 56  SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +            Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVM 133

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R  + ++P  P  + DT S+A       +  L   C+   I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMM 175
             + ++  M+
Sbjct: 192 RTAKLFCYMV 201


>gi|154488710|ref|ZP_02029559.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis
           L2-32]
 gi|154082847|gb|EDN81892.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis
           L2-32]
          Length = 210

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 71/157 (45%), Gaps = 11/157 (7%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL  +K DR IEIG V +          +  +  +    S  A  +H IT   
Sbjct: 7   VVDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLIHVD---RSVGASWVHHITARD 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128
           L   P F  I  E  D    +   ++AHN  FD  F+ AE  R+    P+  S ++ T+ 
Sbjct: 64  LLHAPDFEGIAHELRDLLAGR--VFVAHNVSFDSRFLLAEYSRMGASIPVHQSTMLCTMK 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           ++R      R  L+  C  +G  I++   H AL D+H
Sbjct: 122 LSRSL--IGRGKLSDCCDYFG--IANEDAHSALSDAH 154


>gi|188579669|ref|YP_001923114.1| exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
 gi|179343167|gb|ACB78579.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
          Length = 297

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 10/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + + D    +G +  ++  +  R     + P   + SP  +++HGI 
Sbjct: 1   MSVVAIDFETA--NERRDSACAVG-LAWIEGGRVVRRETRLIRPPQMRFSPGNIRIHGIL 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P+F  +F+EF    +   A  +AHNA FD+G + A L     +P+       T
Sbjct: 58  PADVRDAPTFPEVFAEFRP--DLTGALLLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L IARR  P  + + L  +  R GI   H   H A  D+   +++ +  +
Sbjct: 115 LQIARRIFPDPAGHGLAKVAGRLGIRFEH---HDAGEDAFACAEIALAAL 161


>gi|113970710|ref|YP_734503.1| ribonuclease T [Shewanella sp. MR-4]
 gi|114047939|ref|YP_738489.1| ribonuclease T [Shewanella sp. MR-7]
 gi|122944589|sp|Q0HTX3|RNT_SHESR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|123029558|sp|Q0HHM1|RNT_SHESM RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|113885394|gb|ABI39446.1| RNAse T [Shewanella sp. MR-4]
 gi|113889381|gb|ABI43432.1| RNAse T [Shewanella sp. MR-7]
          Length = 222

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G +S+ D ++EI AV LL          ++T    + P  G    PEAL  +
Sbjct: 20  VVIDVETAGFNSQTDALLEI-AVTLLKMDDEGLLGIDKTLHFNIEPFEGANLEPEALAFN 78

Query: 64  GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113
           GI  T+     + +K +F  IF          +      +AHNA FD GF++  ++R  +
Sbjct: 79  GIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT ++A          L   C   GI   ++  H AL D+   ++++  
Sbjct: 139 KRSPFHPFATFDTATLAGLA--IGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCY 196

Query: 174 MM 175
           ++
Sbjct: 197 IV 198


>gi|220904848|ref|YP_002480160.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869147|gb|ACL49482.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 176

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 10/165 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET+G  + +   + +  +E  D   T + + +   P+ R    E   +HG+T   
Sbjct: 10  VAIDFETSGYAAHSACAVGLARIE--DGRVTEQFYSLVRPPSSRVLFTE---IHGLTWPM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LK+ P F  ++ +   F        +AHNA FD   + A  +      +     + TL  
Sbjct: 65  LKNAPVFGDVWPQMESFMKGAGV-LLAHNASFDRRVLLACCREAGAG-VPEQHFLCTLKG 122

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ARR  P     LN +C+ +GI + H   H A  D+   ++VY+ +
Sbjct: 123 ARRSLPLPSKKLNHVCEHFGIALEH---HHAGSDAAACAEVYLHL 164


>gi|68248930|ref|YP_248042.1| ribonuclease T [Haemophilus influenzae 86-028NP]
 gi|81336659|sp|Q4QNL5|RNT_HAEI8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|68057129|gb|AAX87382.1| ribonuclease T [Haemophilus influenzae 86-028NP]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 20/190 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L +D   Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73

Query: 56  SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +            Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVM 133

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R  + ++P  P  + DT S+A       +  L   C+   I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMM 175
             + ++  M+
Sbjct: 192 RTAKLFCYMV 201


>gi|194365080|ref|YP_002027690.1| ribonuclease T [Stenotrophomonas maltophilia R551-3]
 gi|194347884|gb|ACF51007.1| ribonuclease T [Stenotrophomonas maltophilia R551-3]
          Length = 194

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 19/171 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ET G DS+ + ++EI AV +      L Y     +  V +   G +  P++L++ 
Sbjct: 11  VVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHV-VPAEGLEIDPKSLEVT 69

Query: 64  GITDEFL-----KDKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +       ++K +   IF+        +  Q A  + HNA FD+GF+NA + R   
Sbjct: 70  GIILDHPFRLAKEEKAALDHIFTPVRAAMKKYGCQRAILVGHNAHFDLGFVNAAVARTGH 129

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            ++P  P  + DT+++A   +   +  L       G+       H A+ D+
Sbjct: 130 KRNPFHPFSVFDTVTLAGIAY--GQTVLARAANAAGLGWDANEAHSAVYDT 178


>gi|86151527|ref|ZP_01069741.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315123999|ref|YP_004066003.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|85841156|gb|EAQ58404.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315017721|gb|ADT65814.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 253

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 9/145 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           + DIE+TG  SK + I+EIGA ++ +  +  R FQ F+     K  PE + +L GIT E 
Sbjct: 74  IVDIESTGGVSKGE-ILEIGAAKIQNSKEIGR-FQSFV---KVKEIPENITELTGITYEM 128

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ PS + + S+F  F   +++ ++AHN +FD  FI+  L       L   RI  T+  
Sbjct: 129 VENAPSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 185

Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154
           A+    S +  L  L +  G+  +H
Sbjct: 186 AQCCIESPKYKLEVLKEFLGVENTH 210


>gi|227514853|ref|ZP_03944902.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum ATCC 14931]
 gi|227086785|gb|EEI22097.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum ATCC 14931]
          Length = 946

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 19/172 (11%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D+ETTG   K   RII+IG V + D    N  F+  + P  R   P  + +L GI + 
Sbjct: 16  VVDLETTGTSVKTGSRIIQIGCVLVQDGQVINE-FETKINP--RTVVPLTIEQLTGIKNN 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127
            +K  P F  +        ++    ++AHN  FD  F+NAE +R  + PL  P+  IDT+
Sbjct: 73  DVKGAPLFEDVAPTLKSLLDD--TIFVAHNVNFDFPFLNAEFERAGEAPLTIPA--IDTV 128

Query: 128 SIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++++   P++ +    DL S      + I H   H A+ D+   + + I+++
Sbjct: 129 TLSQILMPTAPSFRLRDLTSY-----LAIDHDQPHSAVSDAVATAHLLIELL 175


>gi|330504960|ref|YP_004381829.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
 gi|328919246|gb|AEB60077.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina NK-01]
          Length = 200

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETTG+     R  EIG V +++  +    +Q  +  +G    P   +L GI++  L
Sbjct: 6   VIDFETTGVSPTQARATEIG-VAIIEGGRIVDRYQSLM-NSGAWVPPFIEQLTGISNAML 63

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P    + +E  DF  E+    +AHNA FD  F +AEL R+ +  L P      LS  
Sbjct: 64  RKAPPSDQVMNEVADFIGER--PLLAHNASFDQKFWDAELARVRRRRLQPFACSLLLSRR 121

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                 S + L +L    G+  + R+ H AL D+ + +++ + +
Sbjct: 122 LLPEAPS-HKLGNLNAWAGLPDTGRA-HRALADAEMAANLTLHL 163


>gi|289706337|ref|ZP_06502695.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Micrococcus luteus SK58]
 gi|289556832|gb|EFD50165.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Micrococcus luteus SK58]
          Length = 371

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 29  IGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87
           +GAV + D    +R   +   P G  +  P  +++HGIT++ + D P F+ ++ E  DF 
Sbjct: 24  VGAVRVRDGVMVDRAEWLIRPPVGFDRFDPRNVRIHGITEDRVLDAPRFAQVYDELADFV 83

Query: 88  NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR 147
                   AHNA FDVG I + L+   +D +     + TL +ARR +      L S  + 
Sbjct: 84  GTD--VLAAHNAGFDVGVIESGLEVSGRD-VPGLEFVCTLVLARRVYDLPSYALPSAARE 140

Query: 148 YGIT 151
            G T
Sbjct: 141 AGFT 144


>gi|260582581|ref|ZP_05850371.1| ribonuclease T [Haemophilus influenzae NT127]
 gi|319775811|ref|YP_004138299.1| ribonuclease T [Haemophilus influenzae F3047]
 gi|329123653|ref|ZP_08252213.1| ribonuclease T [Haemophilus aegyptius ATCC 11116]
 gi|260094392|gb|EEW78290.1| ribonuclease T [Haemophilus influenzae NT127]
 gi|317450402|emb|CBY86618.1| ribonuclease T [Haemophilus influenzae F3047]
 gi|327469852|gb|EGF15317.1| ribonuclease T [Haemophilus aegyptius ATCC 11116]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 20/190 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L +D   Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73

Query: 56  SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +            Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVM 133

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R  + ++P  P  + DT S+A       +  L   C+   I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMM 175
             + ++  M+
Sbjct: 192 RTAKLFCYMV 201


>gi|120608729|ref|YP_968407.1| DNA-directed DNA polymerase [Acidovorax citrulli AAC00-1]
 gi|120587193|gb|ABM30633.1| DNA-directed DNA polymerase [Acidovorax citrulli AAC00-1]
          Length = 221

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 8/151 (5%)

Query: 8   RKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+  S+  R  E+ A+ L++  +    FQ  +   G    P  ++L GIT
Sbjct: 4   RIAVIDFETTGMTPSQGARATEV-AIVLMEEGRPVDRFQSLMR-TGAWLPPFIIQLTGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L   P   S+  E   F    +A  +AHNA FD  F  AEL R   D   P     T
Sbjct: 62  PAMLDTAPPAESVMREAARFVG--DAPMVAHNASFDSRFWAAELAR--ADLPAPHAFACT 117

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRS 156
           + ++RR +P ++ + L  +    G+  + R+
Sbjct: 118 VLLSRRLYPEAASHQLGRIVAHLGLPPAARA 148


>gi|220980061|emb|CAP72253.1| Hypothetical protein [Escherichia coli LF82]
 gi|323934293|gb|EGB30715.1| exonuclease [Escherichia coli E1520]
          Length = 185

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 72/164 (43%), Gaps = 5/164 (3%)

Query: 13  DIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFL 70
           DIE+TGLD     +IIEI A+   +         + +  N R+N  P+A  +HGI+ E L
Sbjct: 9   DIESTGLDFLAGHKIIEI-AITRYELETQRHIDSLEMRFNPRRNIDPKAQAVHGISLEQL 67

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSI 129
             +P  S+  SE   +  E  + W+AHN + FD+ FI  E         D   I   LS 
Sbjct: 68  AAEPLLSNHASEIGAYM-EACSAWVAHNGEAFDIPFIRHEFSGYGVRLPDVPVIDTMLSG 126

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                   R  L  L    G    H   H AL D++L+   + K
Sbjct: 127 LWATEDGKRPRLEELAFSLGFIYDHAKAHSALYDTNLMMQCFFK 170


>gi|332161660|ref|YP_004298237.1| ribonuclease T [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325665890|gb|ADZ42534.1| ribonuclease T [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330864087|emb|CBX74161.1| ribonuclease T [Yersinia enterocolitica W22703]
          Length = 232

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 22/195 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFNG 90

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF        EQ    A  +AHNA FD  F+ A  +R  + 
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASLK 150

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ ++
Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCEL 208

Query: 175 M-----VGGSQINFG 184
           +     +GG  +  G
Sbjct: 209 VNRWKKLGGWPVPAG 223


>gi|239932092|ref|ZP_04689045.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291440458|ref|ZP_06579848.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291343353|gb|EFE70309.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
          Length = 327

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 10/186 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRI+      L    +    +   + P   +  P  + +HG+T E L
Sbjct: 25  VVDVETTGL-ARDDRIVSAAVYRLDARGEVEDHWYTVVNP---ERDPGPVWIHGLTSEAL 80

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  +  EF      +    +AHNA FD   I  E  R   +     R+  T++++
Sbjct: 81  EGAPLFRDVAEEFATRL--EGRVLVAHNAVFDWQMIAREYARARSEAPVKQRLC-TIALS 137

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           +    P   + L SL   +G+    R  H AL D+ +L++ +   +   +        +E
Sbjct: 138 KELGLPLPNHKLESLAAHFGVV--QRRAHHALDDARVLAEAFRPSLRAAAASGVRLPLHE 195

Query: 190 DRFFKE 195
            R   E
Sbjct: 196 CRPLTE 201


>gi|283851810|ref|ZP_06369087.1| DNA polymerase III, epsilon subunit [Desulfovibrio sp. FW1012B]
 gi|283572726|gb|EFC20709.1| DNA polymerase III, epsilon subunit [Desulfovibrio sp. FW1012B]
          Length = 249

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 25/187 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D E TG D +   ++ IGAV L   S      F   + P       +A  +H +T  
Sbjct: 50  VAVDTELTGFDPRRHALVSIGAVRLRGLSILPGEAFYTLVRPPAAVPR-DATLIHRLTGA 108

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P  +   + F DF     A  + H+   D+GF+NA  +R     L  +  IDTL 
Sbjct: 109 ALADAPPVAEALAAFLDFLGP--AVVVGHHVDLDMGFLNAAARRHMGGELA-APCIDTLR 165

Query: 129 IAR------------RKHPSS--RND--LNSLCKRYGIT--ISHRSKHGALLDSHLLSDV 170
           +A                P    R D  L +LC+RYG+    +H ++  AL  ++L   +
Sbjct: 166 LAMALEEKRLAVAGGAGGPDGFERVDYRLPALCRRYGLPGFAAHDARADALATAYLF--L 223

Query: 171 YIKMMVG 177
           Y+    G
Sbjct: 224 YLARHCG 230


>gi|258511479|ref|YP_003184913.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478205|gb|ACV58524.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 240

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 97/236 (41%), Gaps = 13/236 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R  + R +V D ETTGL  +  R++E+  VE+    +    +   + P G    PEA  
Sbjct: 1   MRLQEARFVVVDTETTGLPPEG-RVVELALVEVGLECEPQIVYSALVDP-GCPIPPEASA 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H ITD  +  KP  S ++ +   +    +A  +AHNA+FD G     L    +  +   
Sbjct: 59  VHHITDRDVAGKPRLSQVWPKVLGYIG--DAILVAHNAEFDRGM----LPETGRPWICSK 112

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           R+   L    R  P   N +  L    GI +     H AL D+ + + V+ + +    + 
Sbjct: 113 RLAQHLW---RDAPKHSNQV--LRYWLGIDVEVGQPHRALGDAIVTAHVFQRELRAYLEA 167

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            +    +E   F E    V  +   K        +  + LD   + +Q L  +  W
Sbjct: 168 GYPDDVDELIAFAESPIEVQTMPFGKHKGMPLKEVPLDYLDWALRNLQDLSPDLRW 223


>gi|319946618|ref|ZP_08020852.1| DNA polymerase III, epsilon subunit [Streptococcus australis ATCC
           700641]
 gi|319746666|gb|EFV98925.1| DNA polymerase III, epsilon subunit [Streptococcus australis ATCC
           700641]
          Length = 819

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 63/115 (54%), Gaps = 7/115 (6%)

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GIT++ LK  P FS +  + ++    ++A ++AHN KFD   +   L     + + P
Sbjct: 58  QLTGITNQQLKKAPDFSQVARQVYELI--EDAVFVAHNVKFDANLLAESLFWEGFELITP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              IDT+ +A+   P+  R +L+SLC+   I + H   H A+ D+   + +++K+
Sbjct: 116 R--IDTVELAQVFFPTLERYNLSSLCEELAIPLDH--AHSAISDAQATAQLFLKL 166


>gi|167767436|ref|ZP_02439489.1| hypothetical protein CLOSS21_01955 [Clostridium sp. SS2/1]
 gi|167710728|gb|EDS21307.1| hypothetical protein CLOSS21_01955 [Clostridium sp. SS2/1]
 gi|291558729|emb|CBL37529.1| exonuclease, DNA polymerase III, epsilon subunit family
           [butyrate-producing bacterium SSC/2]
          Length = 235

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 9/155 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL   +D+IIEIGAV++ D  K +  +   + P   + S   + L GI+ + 
Sbjct: 5   VAFDLETTGLSPDSDQIIEIGAVKIRD-GKISGKYNCIIHPE-IEVSDFIINLTGISRDM 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+          EF +F    +   + HN  FD  F+        K P + +  +DTL +
Sbjct: 63  LRKGIPLKEGVEEFLEFSG--DLPILGHNVMFDYKFMKMAAASF-KYPFEKTG-VDTLKV 118

Query: 130 ARRKHPSSRN-DLNSLCKRYGIT--ISHRSKHGAL 161
           AR+      N  L +LC  Y      +HR+   AL
Sbjct: 119 ARKLLTGLENKKLETLCAHYHYVNQAAHRAYDDAL 153


>gi|123442415|ref|YP_001006394.1| ribonuclease T [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|166200024|sp|A1JP36|RNT_YERE8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|122089376|emb|CAL12224.1| ribonuclease T [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 215

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 22/195 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFNG 79

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF        EQ    A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCEL 197

Query: 175 M-----VGGSQINFG 184
           +     +GG  +  G
Sbjct: 198 VNRWKKLGGWPVPAG 212


>gi|196039095|ref|ZP_03106402.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus NVH0597-99]
 gi|196030240|gb|EDX68840.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus NVH0597-99]
          Length = 934

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 110/255 (43%), Gaps = 33/255 (12%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGIT--ISHRSKHGALLDSHL---------------- 166
           T+ +A+   P++ +  L  L K++ +     HR+   AL  + L                
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQHELEHDQPHRADSDALATAELFLQFLNEIEKLPLVTL 178

Query: 167 -----LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEE 220
                LSDV+   +     +N   K    +   EE +   NI+L KR+  L  + I   +
Sbjct: 179 QSLYELSDVFQSDIADVLSVNILKKMMHGKKAAEEYEVYRNIALRKRNYSLNLSEICSSK 238

Query: 221 LDEH-DKTIQTLGKN 234
            D    KTI  L  N
Sbjct: 239 FDAFLHKTIDKLALN 253


>gi|197285252|ref|YP_002151124.1| ribonuclease T [Proteus mirabilis HI4320]
 gi|227355678|ref|ZP_03840072.1| exoribonuclease T [Proteus mirabilis ATCC 29906]
 gi|194682739|emb|CAR42945.1| ribonuclease T [Proteus mirabilis HI4320]
 gi|227164285|gb|EEI49178.1| exoribonuclease T [Proteus mirabilis ATCC 29906]
          Length = 212

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   + K + T    + P  G    P AL+  G
Sbjct: 20  VVIDVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVDPFEGANLEPAALEFTG 79

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF        + N   A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKMVRKGMKDANCNRAIIVAHNANFDHSFVMAAAERAGLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI    +  HGAL D++  S ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTILAKACITAGIPFDSKLAHGALYDTNRTSLLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|317048499|ref|YP_004116147.1| exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
 gi|316950116|gb|ADU69591.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
          Length = 222

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V+++D    N      +CP+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGLQGG---VVEVASVDVIDGQILN-PMSDLICPD-RPISHQAMAVHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP+       +       +  ++AHNA FD   +          P  P + I T+++A
Sbjct: 59  ADKPTIEQAIGRY-----HGSPHYVAHNASFDRRML----------PEMPGQWICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           R+  P  +    +L     + ++  +    H AL D ++ + + I++M
Sbjct: 104 RQLWPGQKYGNQALRHSLKLDVTPPADLHAHRALYDCYVTAALLIRIM 151


>gi|146292700|ref|YP_001183124.1| ribonuclease T [Shewanella putrefaciens CN-32]
 gi|166200020|sp|A4Y5U2|RNT_SHEPC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|145564390|gb|ABP75325.1| RNAse T [Shewanella putrefaciens CN-32]
          Length = 224

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G +S+ D ++EI AV LL          ++T    + P  G    P AL  +
Sbjct: 20  VVIDVETAGFNSQTDALLEI-AVTLLKMDDEGMLGIDKTLHFHIEPFEGANLEPAALAFN 78

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN- 114
           GI         + +K +F  IF          +      +AHNA FD GF++  ++R + 
Sbjct: 79  GIDPNNPLRGAVSEKEAFLDIFKAVKKAQKAADCHRCIIVAHNAAFDHGFVSKAIERCDL 138

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT ++A          L   C   GI   ++  H AL D+   ++++  
Sbjct: 139 KRSPFHPFATFDTATLAGLA--IGHTVLAKACMMAGIPFDNKEAHSALYDTERTAELFCY 196

Query: 174 MM 175
           ++
Sbjct: 197 IV 198


>gi|302342239|ref|YP_003806768.1| DNA polymerase III, subunit epsilon [Desulfarculus baarsii DSM
           2075]
 gi|301638852|gb|ADK84174.1| DNA polymerase III, epsilon subunit [Desulfarculus baarsii DSM
           2075]
          Length = 240

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 27/183 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D+ETTG+D   D ++  GAV L        + F   + P G   +  ++ +HG+T +
Sbjct: 48  VVLDLETTGVDLARDGVVSAGAVRLRGGRVLLGQYFDEMILPQGEVPA-SSITIHGLTPQ 106

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---------------RI 113
            L      + +F +   F        +AHNA FD+ FI+  ++               R+
Sbjct: 107 RLAAGRPLAQVFDDLAGFIGADIV--VAHNAGFDLHFIDRHMRAHHGLALQNLALCTLRL 164

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +  L PS   D   + R K    +  L+++ +R+G+    R  H A+ D+ + + ++ +
Sbjct: 165 CRALLLPS---DPFGVGRHK---GQCRLDAIAERFGLDTPQR--HTAIGDALVTALIFQR 216

Query: 174 MMV 176
           M+ 
Sbjct: 217 MLA 219


>gi|300811276|ref|ZP_07091776.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497736|gb|EFK32758.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 290

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 13/168 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIETTGL++++D+I+ IGAV      K + T    L         + ++L GIT   
Sbjct: 127 VAVDIETTGLNTESDQILSIGAV------KHDGTEFYRLIKQDIDVPKQIVELTGITPAM 180

Query: 70  L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L KD      +  E  DF  +     + +N +FD  F+N E ++     L  + I D L 
Sbjct: 181 LDKDGVPLQDVLGELTDFVGD--VPIVGYNFRFDSAFLNREYRKCGMQEL-KNEIKDLLP 237

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +RK     N  L ++   YG  I ++  H A+ D+    ++ +K++
Sbjct: 238 VVKRKEKFLDNYKLQTVLSNYG--IENKVPHNAVSDARATKELAMKLI 283


>gi|296127268|ref|YP_003634520.1| DNA polymerase III, epsilon subunit [Brachyspira murdochii DSM
           12563]
 gi|296019084|gb|ADG72321.1| DNA polymerase III, epsilon subunit [Brachyspira murdochii DSM
           12563]
          Length = 252

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 11/164 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH-GITDEF 69
           + D+ETTGL  + D+IIEIGA++  D    N+    F         P  +  +  IT++ 
Sbjct: 63  IIDVETTGLKPREDKIIEIGAIKYRD----NKEIDYFSTLVKVDYIPNFISSYTNITNKM 118

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLS 128
           +K+ P       +F+DF  +     + +N  FD+ F+   L  + N + L  +  ID + 
Sbjct: 119 VKNAPRVDEAIKQFYDFVGDD--ILVGYNVPFDIKFLYDALYEVSNGELLLNNDFIDVMY 176

Query: 129 IARRKHPSSRNDLN-SLCKRYGITISHRSKHGALLDSHLLSDVY 171
           IA+R      N    ++   Y I+I +   H A+ D  L S +Y
Sbjct: 177 IAKRVLKDLENYKQVTVASYYNISIDNL--HRAMGDCKLCSAIY 218


>gi|295135414|ref|YP_003586090.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
 gi|294983429|gb|ADF53894.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
          Length = 282

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 10/165 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD ET    ++      +G VE  +  K  R F   + P     +P A+++HGIT E 
Sbjct: 6   VVFDFET----ARGKNPCSLGMVEYKN-GKKYREFYELINPEVAYFNPFAIQIHGITYED 60

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++ + +FS ++     F   +    +AHNAKFD   +   LQR   D + P     TL  
Sbjct: 61  VQHERNFSELWDAMLPFI--EGKTLVAHNAKFDNAVLLYSLQRYGID-VPPYASFCTLQR 117

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ARR        L+SL   +   +     H AL D+ +  ++++K+
Sbjct: 118 ARRLVALPSYKLSSLANFF--EVPQLRHHNALEDAFVCGELFLKL 160


>gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
 gi|297147193|gb|EDY59400.2| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
          Length = 327

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 9/195 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRII      L    +    +   + P   +  P  + +HG+T + L
Sbjct: 25  VVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNP---ERDPGPVWIHGLTSDAL 80

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  I  EF    + +    +AHNA FD   I  E  R  +      R+   +   
Sbjct: 81  EGAPLFQDIADEFSSRLDGRVL--VAHNAVFDWQMIAREYARAGRVAPVSQRLCTIVLSK 138

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
               P   + L SL   +G+ +  R+ H AL D+ +L++ +   +   +  +     +E 
Sbjct: 139 ELGLPLPNHKLESLAAHFGV-VQQRAHH-ALDDARVLAEAFRPSLRAAAARSVRLPLHEC 196

Query: 191 RFFKE-EKKTVPNIS 204
           R   E   + VP  S
Sbjct: 197 RPLTEWTDRAVPRQS 211


>gi|78776758|ref|YP_393073.1| exonuclease [Sulfurimonas denitrificans DSM 1251]
 gi|78497298|gb|ABB43838.1| Exonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 234

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 15/132 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D+ETTGL++  D+I  IG + +   S+T    +  L   G+K S +A  ++ IT+E 
Sbjct: 3   IFLDVETTGLEN-GDKICSIGIICV---SETAIFSKYELVNEGKKISSKASSINHITNEM 58

Query: 70  LKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +KDKP F    S+ W+  +E   Q++  IAHN  FD+  +      +    L   +++DT
Sbjct: 59  IKDKPKFKD--SKTWEILHENNNQSSTIIAHNVNFDLKML------LQSGFLWQGKVVDT 110

Query: 127 LSIARRKHPSSR 138
           L + +   P   
Sbjct: 111 LRVTKHLIPECE 122


>gi|15802257|ref|NP_288281.1| exodeoxyribonuclease X [Escherichia coli O157:H7 EDL933]
 gi|15831808|ref|NP_310581.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. Sakai]
 gi|168762363|ref|ZP_02787370.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501]
 gi|168788263|ref|ZP_02813270.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869]
 gi|217328801|ref|ZP_03444882.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588]
 gi|261227657|ref|ZP_05941938.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258177|ref|ZP_05950710.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. FRIK966]
 gi|12515897|gb|AAG56834.1|AE005407_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13362022|dbj|BAB35977.1| exonuclease X [Escherichia coli O157:H7 str. Sakai]
 gi|189367397|gb|EDU85813.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501]
 gi|189372044|gb|EDU90460.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869]
 gi|209767640|gb|ACI82132.1| exonuclease X [Escherichia coli]
 gi|217318148|gb|EEC26575.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588]
 gi|320188544|gb|EFW63206.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC1212]
 gi|326342223|gb|EGD66004.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. 1044]
          Length = 220

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVHPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|317497265|ref|ZP_07955589.1| exonuclease [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895510|gb|EFV17668.1| exonuclease [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 235

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 9/155 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL   +D+IIEIGAV++ D  K +  +   + P   + S   + L GI+ + 
Sbjct: 5   VAFDLETTGLSPDSDQIIEIGAVKIRD-GKISGKYNCIIHPE-IEVSDFIINLTGISRDM 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+          EF +F    +   + HN  FD  F+        K P + +  +DTL +
Sbjct: 63  LRKGIPLKEGVEEFLEFSG--DLPVLGHNVMFDYKFMKMAAASF-KYPFEKTG-VDTLKV 118

Query: 130 ARRKHPSSRN-DLNSLCKRYGIT--ISHRSKHGAL 161
           AR+      N  L +LC  Y      +HR+   AL
Sbjct: 119 ARKLLTGLENKKLETLCAHYHYVNQAAHRAYDDAL 153


>gi|313618186|gb|EFR90268.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           innocua FSL S4-378]
          Length = 931

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 11/172 (6%)

Query: 1   MIRKNKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M +  K R IV D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  
Sbjct: 1   MEQMKKKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYSTFLNPE--KPIPAF 57

Query: 60  LK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           ++ L GI+ + +K+ P F  +          ++  ++AHN  FD  F+  E+ R     L
Sbjct: 58  IQELTGISPKDVKNAPLFEDVAPIIASLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-L 114

Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              + +DT+ +AR  +P      L  L   +G  + H   H A  D+ + +D
Sbjct: 115 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 164


>gi|313887234|ref|ZP_07820929.1| exonuclease [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923325|gb|EFR34139.1| exonuclease [Porphyromonas asaccharolytica PR426713P-I]
          Length = 255

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGITD 67
           +VFDIE TGLD  NDRIIE+  ++L+ D  +  RT +     N     P E+  +HGITD
Sbjct: 10  VVFDIEATGLDITNDRIIELTILKLMPDGERIVRTRRF----NPEMPIPAESTAIHGITD 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIID 125
           E ++D P F +      +  +    +   +N+ +FD+  +  E  R   +  L   + ID
Sbjct: 66  EDVRDCPPFRACAKSLAELID--GCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLSRQHID 123

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +I  +  P +    +   C R      H   HGA  D+    DV +  +
Sbjct: 124 VQTIFHKMEPRTLEGAVRFYCHR-----EHIGAHGAEADTIATLDVLLAQL 169


>gi|120599226|ref|YP_963800.1| ribonuclease T [Shewanella sp. W3-18-1]
 gi|166200022|sp|A1RKQ1|RNT_SHESW RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|120559319|gb|ABM25246.1| RNAse T [Shewanella sp. W3-18-1]
 gi|319426004|gb|ADV54078.1| ribonuclease T [Shewanella putrefaciens 200]
          Length = 223

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G +S+ D ++EI AV LL          ++T    + P  G    P AL  +
Sbjct: 20  VVIDVETAGFNSQTDALLEI-AVTLLKMDDEGMLGIDKTLHFHIEPFEGANLEPAALAFN 78

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN- 114
           GI         + +K +F  IF          +      +AHNA FD GF++  ++R + 
Sbjct: 79  GIDPNNPLRGAVSEKEAFLDIFKAVKKAQKAADCHRCIIVAHNAAFDHGFVSKAIERCDL 138

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT ++A          L   C   GI   ++  H AL D+   ++++  
Sbjct: 139 KRSPFHPFATFDTATLAGLA--IGHTVLAKACMMAGIPFDNKEAHSALYDTERTAELFCY 196

Query: 174 MM 175
           ++
Sbjct: 197 IV 198


>gi|330829256|ref|YP_004392208.1| ribonuclease T [Aeromonas veronii B565]
 gi|328804392|gb|AEB49591.1| Ribonuclease T [Aeromonas veronii B565]
          Length = 225

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A  L      +   ++ F   + P  G      AL+  G
Sbjct: 18  VVIDVETAGFNAKTDALLEIAAYTLKMDEQGWLVPDQVFHFHVEPFEGANLEKAALEFTG 77

Query: 65  ITDEF------LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--I 113
           I D +      + +K + + IF        EQ+   A  +AHNA FD GF+ A  +R  +
Sbjct: 78  I-DPYNPLRGAVSEKEALTEIFKGIRKGMKEQDCGRAIIVAHNATFDHGFVMAAAERAGL 136

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C+   I   ++  H AL D+   ++++  
Sbjct: 137 KRNPFHPFATFDTAALSGLA--LGQTVLAKACQSARIPFDNKEAHSALYDTERTTELFCH 194

Query: 174 MM 175
           ++
Sbjct: 195 IV 196


>gi|300938801|ref|ZP_07153512.1| exonuclease [Escherichia coli MS 21-1]
 gi|300456266|gb|EFK19759.1| exonuclease [Escherichia coli MS 21-1]
          Length = 220

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDIID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|294083688|ref|YP_003550445.1| DNA polymerase III subunit epsilon [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663260|gb|ADE38361.1| DNA polymerase III, epsilon subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 730

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 36/185 (19%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT----FQVFLCPNGRKNSPEALKLHGI 65
           +  D+ETTGL  + DRI++IGA+ +      +R      ++ + P G      +  +HGI
Sbjct: 34  VSLDLETTGLKPQTDRIVQIGAIGVDVAVAADRAEDDHIEMLVDP-GIAVPAASTAVHGI 92

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---------------L 110
            D  L D    +        F N++    + +N  FD+ F+  E               L
Sbjct: 93  NDAMLADAKPIAVALPALRSFINKRII--LGYNIGFDLAFLTNEAKRQGLEWKWSGALCL 150

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +++    L P  +   L IA         DL++L   YG+ +  R  H AL D+ + + V
Sbjct: 151 RQLATVLLGPEAM---LMIA---------DLDALAAHYGVPVIGR--HTALGDATITAQV 196

Query: 171 YIKMM 175
           Y KM+
Sbjct: 197 YHKMV 201


>gi|312881846|ref|ZP_07741617.1| ribonuclease T [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370492|gb|EFP97973.1| ribonuclease T [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 215

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++  D ++EI A+ L      N     T    + P  G     EAL+ +G
Sbjct: 20  VVIDVETAGFNADTDALLEICAITLTMDEFGNLIPASTLHFHVEPFEGANIEKEALEFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   + +    E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 80  IRDPFSPLRGAVTEAEALKEIYKLVRKEQKAADCNRAIIVAHNATFDHNFVMAASERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++   +   +  L   CK  G+   ++  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNKEAHSALYDTQKTAELFCG 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|194433962|ref|ZP_03066234.1| exodeoxyribonuclease X [Shigella dysenteriae 1012]
 gi|194417834|gb|EDX33931.1| exodeoxyribonuclease X [Shigella dysenteriae 1012]
 gi|320182620|gb|EFW57509.1| Exodeoxyribonuclease X [Shigella boydii ATCC 9905]
 gi|332095285|gb|EGJ00309.1| exonuclease family protein [Shigella dysenteriae 155-74]
          Length = 220

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|168752095|ref|ZP_02777117.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4113]
 gi|168758576|ref|ZP_02783583.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4401]
 gi|168770825|ref|ZP_02795832.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4486]
 gi|168783143|ref|ZP_02808150.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4076]
 gi|168802378|ref|ZP_02827385.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC508]
 gi|195939745|ref|ZP_03085127.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4024]
 gi|208810405|ref|ZP_03252281.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4206]
 gi|208816703|ref|ZP_03257823.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4045]
 gi|208820052|ref|ZP_03260372.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4042]
 gi|209398184|ref|YP_002270926.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4115]
 gi|254793468|ref|YP_003078305.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14359]
 gi|188013988|gb|EDU52110.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4113]
 gi|188999500|gb|EDU68486.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4076]
 gi|189354630|gb|EDU73049.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4401]
 gi|189360293|gb|EDU78712.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4486]
 gi|189375616|gb|EDU94032.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC508]
 gi|208724921|gb|EDZ74628.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4206]
 gi|208731046|gb|EDZ79735.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4045]
 gi|208740175|gb|EDZ87857.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4042]
 gi|209159584|gb|ACI37017.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4115]
 gi|209767642|gb|ACI82133.1| exonuclease X [Escherichia coli]
 gi|209767646|gb|ACI82135.1| exonuclease X [Escherichia coli]
 gi|254592868|gb|ACT72229.1| DNA exonuclease X [Escherichia coli O157:H7 str. TW14359]
 gi|326343773|gb|EGD67535.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. 1125]
          Length = 220

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVHPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|94676709|ref|YP_588563.1| ribonuclease T [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|166228561|sp|Q1LU01|RNT_BAUCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|94219859|gb|ABF14018.1| ribonuclease T [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 218

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI A+ L +D+    KT++T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNSGTDALLEIAAITLQMDHHGWLKTHKTLHFNIEPFPGSILQPEALIFNG 79

Query: 65  I-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQR--IN 114
           I  D  L+   +      E +   ++         A  +AHNA FD  F+ A   R  I 
Sbjct: 80  IDPDNPLRYAVTEREALYELFTIVHQGIKDDDCHRAILVAHNAAFDHSFLMAAANRTKIK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +P  P    DT +++       +  L   C   GI  +    H AL D+   ++++ ++
Sbjct: 140 HNPFHPFATFDTAALSGLV--LGQTVLLKACLTAGIPFNTSEAHSALYDAERTAELFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|313668201|ref|YP_004048485.1| DNA polymerase III subunit [Neisseria lactamica ST-640]
 gi|313005663|emb|CBN87106.1| putative DNA polymerase III subunit [Neisseria lactamica 020-06]
          Length = 470

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           M   V D+E+TG +   D + E+  V+     +  R  +     N +K  P+   +L GI
Sbjct: 28  MPVAVVDLESTGGNLYEDMVTEVALVKF----EQGRAERYEWLVNPQKPIPKFVAELTGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + 
Sbjct: 84  SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|148825392|ref|YP_001290145.1| ribonuclease T [Haemophilus influenzae PittEE]
 gi|229846411|ref|ZP_04466519.1| ribonuclease T [Haemophilus influenzae 7P49H1]
 gi|166228565|sp|A5UAG1|RNT_HAEIE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|148715552|gb|ABQ97762.1| ribonuclease T [Haemophilus influenzae PittEE]
 gi|229810504|gb|EEP46222.1| ribonuclease T [Haemophilus influenzae 7P49H1]
          Length = 229

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 20/190 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L +D   Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73

Query: 56  SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +            Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMIRRGQKDADCQRSIIVAHNAAFDQSFVM 133

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R  + ++P  P  + DT S+A       +  L   C    I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMM 175
             ++++  M+
Sbjct: 192 RTAELFCYMV 201


>gi|291524324|emb|CBK89911.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium rectale DSM 17629]
          Length = 260

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 21/173 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHG 64
           V D+E TGL +KND+IIEIGA      E++D      T    + P  +++ P+ ++ L G
Sbjct: 27  VIDLEMTGLSAKNDKIIEIGAARVRGGEIVD------TISTLVNP--KQHIPQRVQELTG 78

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD  +++            +F  +     +  N  FD  F+      +N          
Sbjct: 79  ITDSDVENAADMDVAVDNLLNFIGDDII--LGQNVTFDYSFLKQ--WAVNHKRTLSLNAY 134

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           DTL IAR+  P+ ++  L  LC+ +G  +S  + H AL D+     ++ K++V
Sbjct: 135 DTLKIARKCLPAEQSKKLEDLCEYFG--VSRENAHRALDDAIETKQIFEKLLV 185


>gi|58337906|ref|YP_194491.1| DNA polymerase III [Lactobacillus acidophilus NCFM]
 gi|227902927|ref|ZP_04020732.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796]
 gi|58255223|gb|AAV43460.1| DNA polymerase III [Lactobacillus acidophilus NCFM]
 gi|227869343|gb|EEJ76764.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796]
          Length = 318

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 11/158 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTGL    DRI E+GAV++ +    ++   +   P   K      KL+GIT+E +
Sbjct: 35  MLDIETTGLSPYRDRITELGAVKVRNGQIVDQYTNLVKFPKNNKVPAFITKLNGITEEQI 94

Query: 71  KDK--PSFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            ++  P+  +I +EF +F  +   + IA +N  FD+ F+  +L +  K P+  +  +D L
Sbjct: 95  INEGIPAEQAI-TEFREFIGD---DVIAGYNINFDLNFL-YDLSQKFKLPILNNDYVDVL 149

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164
            +AR  +P  R N L    +R G  I+   +H  L DS
Sbjct: 150 RLARAYYPRERHNRLIDCMQRAG--IAKVEQHHGLADS 185


>gi|189500246|ref|YP_001959716.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides
           BS1]
 gi|189495687|gb|ACE04235.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides
           BS1]
          Length = 232

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 20/182 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE--ALKLH 63
           +R +VFD ETTG D+  D +I IGAV +   +     +F+V +    R N  E  A+  H
Sbjct: 43  VRYVVFDTETTGFDTSRDLVISIGAVAINALHIDVQDSFEVLI---RRDNVGEKDAVTTH 99

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G+  + L +          F ++ +      +A +A FDV  IN  L R     L  + +
Sbjct: 100 GLLCKDLDEGGEEQESLDAFINYVS--TGVLVAQHADFDVAMINRMLHRYYGFEL-FNHV 156

Query: 124 IDTLSIARR---------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           IDT S+A+R          H S    L+ L  RY I +  R  H A  D+ L + ++  +
Sbjct: 157 IDTASLAKRLEKGPYFNLAHKSGEYRLDMLLDRYNIRMHDR--HTAAGDAFLTARLFQML 214

Query: 175 MV 176
           + 
Sbjct: 215 LA 216


>gi|16129797|ref|NP_416358.1| DNA exonuclease X [Escherichia coli str. K-12 substr. MG1655]
 gi|74311833|ref|YP_310252.1| exodeoxyribonuclease X [Shigella sonnei Ss046]
 gi|82776429|ref|YP_402778.1| exodeoxyribonuclease X [Shigella dysenteriae Sd197]
 gi|89108684|ref|AP_002464.1| DNA exonuclease X [Escherichia coli str. K-12 substr. W3110]
 gi|91211067|ref|YP_541053.1| exodeoxyribonuclease X [Escherichia coli UTI89]
 gi|110641962|ref|YP_669692.1| exodeoxyribonuclease X [Escherichia coli 536]
 gi|117623997|ref|YP_852910.1| exodeoxyribonuclease X [Escherichia coli APEC O1]
 gi|157159299|ref|YP_001463146.1| exodeoxyribonuclease X [Escherichia coli E24377A]
 gi|161486210|ref|NP_754148.2| exodeoxyribonuclease X [Escherichia coli CFT073]
 gi|170081500|ref|YP_001730820.1| DNA exonuclease X [Escherichia coli str. K-12 substr. DH10B]
 gi|170681411|ref|YP_001743401.1| exodeoxyribonuclease X [Escherichia coli SMS-3-5]
 gi|188495324|ref|ZP_03002594.1| exodeoxyribonuclease X [Escherichia coli 53638]
 gi|191168492|ref|ZP_03030279.1| exodeoxyribonuclease X [Escherichia coli B7A]
 gi|191172968|ref|ZP_03034502.1| exodeoxyribonuclease X [Escherichia coli F11]
 gi|193066046|ref|ZP_03047103.1| exodeoxyribonuclease X [Escherichia coli E22]
 gi|194429668|ref|ZP_03062186.1| exodeoxyribonuclease X [Escherichia coli B171]
 gi|194439062|ref|ZP_03071145.1| exodeoxyribonuclease X [Escherichia coli 101-1]
 gi|209919210|ref|YP_002293294.1| exodeoxyribonuclease X [Escherichia coli SE11]
 gi|218554418|ref|YP_002387331.1| exodeoxyribonuclease X [Escherichia coli IAI1]
 gi|218558708|ref|YP_002391621.1| exodeoxyribonuclease X [Escherichia coli S88]
 gi|218689782|ref|YP_002397994.1| exodeoxyribonuclease X [Escherichia coli ED1a]
 gi|218695410|ref|YP_002403077.1| exodeoxyribonuclease X [Escherichia coli 55989]
 gi|218699585|ref|YP_002407214.1| exodeoxyribonuclease X [Escherichia coli IAI39]
 gi|218705343|ref|YP_002412862.1| exodeoxyribonuclease X [Escherichia coli UMN026]
 gi|227885729|ref|ZP_04003534.1| exodeoxyribonuclease X [Escherichia coli 83972]
 gi|237705796|ref|ZP_04536277.1| exodeoxyribonuclease X [Escherichia sp. 3_2_53FAA]
 gi|238901059|ref|YP_002926855.1| DNA exonuclease X [Escherichia coli BW2952]
 gi|256017967|ref|ZP_05431832.1| exodeoxyribonuclease X [Shigella sp. D9]
 gi|256022492|ref|ZP_05436357.1| exodeoxyribonuclease X [Escherichia sp. 4_1_40B]
 gi|260844189|ref|YP_003221967.1| DNA exonuclease X [Escherichia coli O103:H2 str. 12009]
 gi|260855770|ref|YP_003229661.1| DNA exonuclease X [Escherichia coli O26:H11 str. 11368]
 gi|260868365|ref|YP_003234767.1| DNA exonuclease X [Escherichia coli O111:H- str. 11128]
 gi|291283026|ref|YP_003499844.1| Exodeoxyribonuclease 10 [Escherichia coli O55:H7 str. CB9615]
 gi|293405339|ref|ZP_06649331.1| exodeoxyribonuclease X [Escherichia coli FVEC1412]
 gi|293410154|ref|ZP_06653730.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293415159|ref|ZP_06657802.1| exodeoxyribonuclease X [Escherichia coli B185]
 gi|293446216|ref|ZP_06662638.1| exodeoxyribonuclease X [Escherichia coli B088]
 gi|298380980|ref|ZP_06990579.1| exodeoxyribonuclease X [Escherichia coli FVEC1302]
 gi|300816266|ref|ZP_07096488.1| exonuclease [Escherichia coli MS 107-1]
 gi|300824216|ref|ZP_07104334.1| exonuclease [Escherichia coli MS 119-7]
 gi|300899088|ref|ZP_07117373.1| exonuclease [Escherichia coli MS 198-1]
 gi|300917583|ref|ZP_07134236.1| exonuclease [Escherichia coli MS 115-1]
 gi|300924914|ref|ZP_07140845.1| exonuclease [Escherichia coli MS 182-1]
 gi|300928872|ref|ZP_07144378.1| exonuclease [Escherichia coli MS 187-1]
 gi|300951460|ref|ZP_07165297.1| exonuclease [Escherichia coli MS 116-1]
 gi|300956649|ref|ZP_07168925.1| exonuclease [Escherichia coli MS 175-1]
 gi|300982052|ref|ZP_07175871.1| exonuclease [Escherichia coli MS 200-1]
 gi|300994204|ref|ZP_07180761.1| exonuclease [Escherichia coli MS 45-1]
 gi|301025418|ref|ZP_07188970.1| exonuclease [Escherichia coli MS 196-1]
 gi|301050807|ref|ZP_07197661.1| exonuclease [Escherichia coli MS 185-1]
 gi|301327607|ref|ZP_07220824.1| exonuclease [Escherichia coli MS 78-1]
 gi|306814328|ref|ZP_07448494.1| exodeoxyribonuclease X [Escherichia coli NC101]
 gi|307138504|ref|ZP_07497860.1| exodeoxyribonuclease X [Escherichia coli H736]
 gi|307314078|ref|ZP_07593690.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W]
 gi|309789238|ref|ZP_07683831.1| exonuclease family protein [Shigella dysenteriae 1617]
 gi|309794224|ref|ZP_07688648.1| exonuclease [Escherichia coli MS 145-7]
 gi|312969882|ref|ZP_07784065.1| exonuclease family protein [Escherichia coli 1827-70]
 gi|331642455|ref|ZP_08343590.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H736]
 gi|331653250|ref|ZP_08354255.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M718]
 gi|331668536|ref|ZP_08369384.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA271]
 gi|331673376|ref|ZP_08374144.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA280]
 gi|331677723|ref|ZP_08378398.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H591]
 gi|331683348|ref|ZP_08383949.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H299]
 gi|332279002|ref|ZP_08391415.1| exodeoxyribonuclease X [Shigella sp. D9]
 gi|84027958|sp|P0AEK1|EXOX_ECOL6 RecName: Full=Exodeoxyribonuclease 10; AltName:
           Full=Exodeoxyribonuclease X; Short=Exo X;
           Short=Exonuclease X
 gi|84027959|sp|P0AEK0|EXOX_ECOLI RecName: Full=Exodeoxyribonuclease 10; AltName:
           Full=Exodeoxyribonuclease X; Short=Exo X;
           Short=Exonuclease X
 gi|6166471|gb|AAF04847.1|AF194116_1 exonuclease X [Escherichia coli]
 gi|1788149|gb|AAC74914.1| DNA exonuclease X [Escherichia coli str. K-12 substr. MG1655]
 gi|73855310|gb|AAZ88017.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81240577|gb|ABB61287.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|85675148|dbj|BAE76547.1| DNA exonuclease X [Escherichia coli str. K12 substr. W3110]
 gi|91072641|gb|ABE07522.1| exodeoxyribonuclease X [Escherichia coli UTI89]
 gi|110343554|gb|ABG69791.1| exodeoxyribonuclease X [Escherichia coli 536]
 gi|115513121|gb|ABJ01196.1| exodeoxyribonuclease X [Escherichia coli APEC O1]
 gi|157081329|gb|ABV21037.1| exodeoxyribonuclease X [Escherichia coli E24377A]
 gi|169889335|gb|ACB03042.1| DNA exonuclease X [Escherichia coli str. K-12 substr. DH10B]
 gi|170519129|gb|ACB17307.1| exodeoxyribonuclease X [Escherichia coli SMS-3-5]
 gi|188490523|gb|EDU65626.1| exodeoxyribonuclease X [Escherichia coli 53638]
 gi|190901445|gb|EDV61207.1| exodeoxyribonuclease X [Escherichia coli B7A]
 gi|190906679|gb|EDV66284.1| exodeoxyribonuclease X [Escherichia coli F11]
 gi|192926283|gb|EDV80920.1| exodeoxyribonuclease X [Escherichia coli E22]
 gi|194412310|gb|EDX28614.1| exodeoxyribonuclease X [Escherichia coli B171]
 gi|194422021|gb|EDX38025.1| exodeoxyribonuclease X [Escherichia coli 101-1]
 gi|209767638|gb|ACI82131.1| exonuclease X [Escherichia coli]
 gi|209767644|gb|ACI82134.1| exonuclease X [Escherichia coli]
 gi|209912469|dbj|BAG77543.1| DNA exonuclease X [Escherichia coli SE11]
 gi|218352142|emb|CAU97881.1| DNA exonuclease X [Escherichia coli 55989]
 gi|218361186|emb|CAQ98770.1| DNA exonuclease X [Escherichia coli IAI1]
 gi|218365477|emb|CAR03204.1| DNA exonuclease X [Escherichia coli S88]
 gi|218369571|emb|CAR17340.1| DNA exonuclease X [Escherichia coli IAI39]
 gi|218427346|emb|CAR08241.2| DNA exonuclease X [Escherichia coli ED1a]
 gi|218432440|emb|CAR13333.1| DNA exonuclease X [Escherichia coli UMN026]
 gi|222033593|emb|CAP76334.1| exodeoxyribonuclease 10 [Escherichia coli LF82]
 gi|226900553|gb|EEH86812.1| exodeoxyribonuclease X [Escherichia sp. 3_2_53FAA]
 gi|227837302|gb|EEJ47768.1| exodeoxyribonuclease X [Escherichia coli 83972]
 gi|238860815|gb|ACR62813.1| DNA exonuclease X [Escherichia coli BW2952]
 gi|257754419|dbj|BAI25921.1| DNA exonuclease X [Escherichia coli O26:H11 str. 11368]
 gi|257759336|dbj|BAI30833.1| DNA exonuclease X [Escherichia coli O103:H2 str. 12009]
 gi|257764721|dbj|BAI36216.1| DNA exonuclease X [Escherichia coli O111:H- str. 11128]
 gi|260449035|gb|ACX39457.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli DH1]
 gi|281178912|dbj|BAI55242.1| DNA exonuclease X [Escherichia coli SE15]
 gi|284921762|emb|CBG34835.1| exodeoxyribonuclease X [Escherichia coli 042]
 gi|290762899|gb|ADD56860.1| Exodeoxyribonuclease 10 [Escherichia coli O55:H7 str. CB9615]
 gi|291323046|gb|EFE62474.1| exodeoxyribonuclease X [Escherichia coli B088]
 gi|291427547|gb|EFF00574.1| exodeoxyribonuclease X [Escherichia coli FVEC1412]
 gi|291432807|gb|EFF05786.1| exodeoxyribonuclease X [Escherichia coli B185]
 gi|291470622|gb|EFF13106.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294490108|gb|ADE88864.1| exodeoxyribonuclease X [Escherichia coli IHE3034]
 gi|298278422|gb|EFI19936.1| exodeoxyribonuclease X [Escherichia coli FVEC1302]
 gi|299880094|gb|EFI88305.1| exonuclease [Escherichia coli MS 196-1]
 gi|300297496|gb|EFJ53881.1| exonuclease [Escherichia coli MS 185-1]
 gi|300307354|gb|EFJ61874.1| exonuclease [Escherichia coli MS 200-1]
 gi|300316527|gb|EFJ66311.1| exonuclease [Escherichia coli MS 175-1]
 gi|300357297|gb|EFJ73167.1| exonuclease [Escherichia coli MS 198-1]
 gi|300406332|gb|EFJ89870.1| exonuclease [Escherichia coli MS 45-1]
 gi|300415183|gb|EFJ98493.1| exonuclease [Escherichia coli MS 115-1]
 gi|300418932|gb|EFK02243.1| exonuclease [Escherichia coli MS 182-1]
 gi|300449289|gb|EFK12909.1| exonuclease [Escherichia coli MS 116-1]
 gi|300463162|gb|EFK26655.1| exonuclease [Escherichia coli MS 187-1]
 gi|300523287|gb|EFK44356.1| exonuclease [Escherichia coli MS 119-7]
 gi|300530956|gb|EFK52018.1| exonuclease [Escherichia coli MS 107-1]
 gi|300845856|gb|EFK73616.1| exonuclease [Escherichia coli MS 78-1]
 gi|305852487|gb|EFM52938.1| exodeoxyribonuclease X [Escherichia coli NC101]
 gi|306906216|gb|EFN36733.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W]
 gi|307553862|gb|ADN46637.1| exodeoxyribonuclease X [Escherichia coli ABU 83972]
 gi|307626675|gb|ADN70979.1| exodeoxyribonuclease X [Escherichia coli UM146]
 gi|308122129|gb|EFO59391.1| exonuclease [Escherichia coli MS 145-7]
 gi|308922992|gb|EFP68506.1| exonuclease family protein [Shigella dysenteriae 1617]
 gi|310338167|gb|EFQ03256.1| exonuclease family protein [Escherichia coli 1827-70]
 gi|312946443|gb|ADR27270.1| exodeoxyribonuclease X [Escherichia coli O83:H1 str. NRG 857C]
 gi|315061147|gb|ADT75474.1| DNA exonuclease X [Escherichia coli W]
 gi|315136487|dbj|BAJ43646.1| exodeoxyribonuclease 10 [Escherichia coli DH1]
 gi|315286537|gb|EFU45972.1| exonuclease [Escherichia coli MS 110-3]
 gi|315290373|gb|EFU49749.1| exonuclease [Escherichia coli MS 153-1]
 gi|320194441|gb|EFW69072.1| Exodeoxyribonuclease X [Escherichia coli WV_060327]
 gi|320198024|gb|EFW72632.1| Exodeoxyribonuclease X [Escherichia coli EC4100B]
 gi|320641696|gb|EFX11084.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. G5101]
 gi|320647056|gb|EFX15889.1| exodeoxyribonuclease X [Escherichia coli O157:H- str. 493-89]
 gi|320652339|gb|EFX20637.1| exodeoxyribonuclease X [Escherichia coli O157:H- str. H 2687]
 gi|320657940|gb|EFX25702.1| exodeoxyribonuclease X [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320658513|gb|EFX26207.1| exodeoxyribonuclease X [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668411|gb|EFX35238.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. LSU-61]
 gi|323152600|gb|EFZ38877.1| exonuclease family protein [Escherichia coli EPECa14]
 gi|323158672|gb|EFZ44686.1| exonuclease family protein [Escherichia coli E128010]
 gi|323166600|gb|EFZ52360.1| exonuclease family protein [Shigella sonnei 53G]
 gi|323180624|gb|EFZ66169.1| exonuclease family protein [Escherichia coli 1180]
 gi|323186407|gb|EFZ71755.1| exonuclease family protein [Escherichia coli 1357]
 gi|323378276|gb|ADX50544.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli KO11]
 gi|323940489|gb|EGB36680.1| exonuclease [Escherichia coli E482]
 gi|323948271|gb|EGB44259.1| exonuclease [Escherichia coli H120]
 gi|323952346|gb|EGB48219.1| exonuclease [Escherichia coli H252]
 gi|323956475|gb|EGB52217.1| exonuclease [Escherichia coli H263]
 gi|323968612|gb|EGB64018.1| exonuclease [Escherichia coli M863]
 gi|323972649|gb|EGB67852.1| exonuclease [Escherichia coli TA007]
 gi|323977972|gb|EGB73058.1| exonuclease [Escherichia coli TW10509]
 gi|324007199|gb|EGB76418.1| exonuclease [Escherichia coli MS 57-2]
 gi|324012816|gb|EGB82035.1| exonuclease [Escherichia coli MS 60-1]
 gi|324018034|gb|EGB87253.1| exonuclease [Escherichia coli MS 117-3]
 gi|324118904|gb|EGC12793.1| exonuclease [Escherichia coli E1167]
 gi|327252967|gb|EGE64621.1| exonuclease family protein [Escherichia coli STEC_7v]
 gi|331039253|gb|EGI11473.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H736]
 gi|331049348|gb|EGI21420.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M718]
 gi|331063730|gb|EGI35641.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA271]
 gi|331069574|gb|EGI40961.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA280]
 gi|331074183|gb|EGI45503.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H591]
 gi|331079563|gb|EGI50760.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H299]
 gi|332101354|gb|EGJ04700.1| exodeoxyribonuclease X [Shigella sp. D9]
 gi|332343569|gb|AEE56903.1| exonuclease [Escherichia coli UMNK88]
          Length = 220

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|332090017|gb|EGI95117.1| exonuclease family protein [Shigella boydii 5216-82]
          Length = 220

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|315303836|ref|ZP_07874324.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           ivanovii FSL F6-596]
 gi|313627797|gb|EFR96442.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           ivanovii FSL F6-596]
          Length = 928

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 11/165 (6%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R IV D+ETTG   S++DRII+  A   ++  K   T+  FL P   K  P  ++ L GI
Sbjct: 5   RYIVVDLETTGNQASRDDRIIQFAAC-FVESGKRLETYATFLNPE--KPIPAFIQELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + ++D P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +D
Sbjct: 62  SPKDVRDAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMNRAGIS-LGKMKKLD 118

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           T+ +AR  +P      L  L   +G  + H   H A  D+ + +D
Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 161


>gi|82543665|ref|YP_407612.1| exodeoxyribonuclease X [Shigella boydii Sb227]
 gi|81245076|gb|ABB65784.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|320177515|gb|EFW52509.1| Exodeoxyribonuclease X [Shigella dysenteriae CDC 74-1112]
 gi|320183242|gb|EFW58099.1| Exodeoxyribonuclease X [Shigella flexneri CDC 796-83]
 gi|332096685|gb|EGJ01676.1| exonuclease family protein [Shigella boydii 3594-74]
          Length = 220

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|323186850|gb|EFZ72169.1| exonuclease family protein [Escherichia coli RN587/1]
          Length = 220

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|311746711|ref|ZP_07720496.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1]
 gi|126578388|gb|EAZ82552.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1]
          Length = 456

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 14/191 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   + DIETTG  +    I EI A+ + D  K    F+  +  N  ++ P  +  L GI
Sbjct: 1   MEFAIVDIETTGGAASTCGITEI-AILIHDGEKVIEEFESLI--NPEQDIPTYITGLTGI 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRII 124
            +  + D P+F  +  + WD  + +   ++AH+  FD GF+ A    I ++  +D    +
Sbjct: 58  DNSMVSDAPTFEELSDKLWDLLHGRV--FVAHSVNFDYGFVRACFNAIGREFKVDK---L 112

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            T+ +AR+  P  S   L  +C+   I I  R  H A+ D+   + ++ +M+   SQ  F
Sbjct: 113 CTVRLARKIIPGLSSYSLGRICETQKIPILAR--HRAMGDARATAILFDQMLKKDSQTVF 170

Query: 184 -GFKTNEDRFF 193
              K N    F
Sbjct: 171 QALKKNSGEAF 181


>gi|220915934|ref|YP_002491238.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953788|gb|ACL64172.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 207

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 16/176 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNS--PEALKLHGITDE 68
            D+ET GLD + D I+ +G V +   S +   +F   + P     +  P ++  H +   
Sbjct: 22  LDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFSTLIRPEAAAAAIDPGSILAHQLVPH 81

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   PS  S+ ++  D    + A  + H A  DV F+    +R  +   +P  ++DT++
Sbjct: 82  DVATAPSLDSVLADV-DLRAREGA-LLVHQASLDVAFLKRAYRRCGRRWPEPP-VVDTVA 138

Query: 129 I----ARRKH------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +    A+R+       PS   DLN L  R    +    +H AL D+   +++++ +
Sbjct: 139 LLIKAAKRQRFVNPDAPSMEPDLNLLAARRQRGLPDYGQHDALTDAVATAELFLVL 194


>gi|309702068|emb|CBJ01382.1| exodeoxyribonuclease X [Escherichia coli ETEC H10407]
 gi|323937102|gb|EGB33382.1| exonuclease [Escherichia coli E1520]
          Length = 220

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD        +R+   P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFD--------RRVL--PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|304312854|ref|YP_003812452.1| Ribonuclease T [gamma proteobacterium HdN1]
 gi|301798587|emb|CBL46817.1| Ribonuclease T [gamma proteobacterium HdN1]
          Length = 223

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEA-LKLHG 64
           +V D+ET G +S+ D ++EI A+ L      + K  RT    + P    N  +A L+  G
Sbjct: 19  VVIDVETGGFNSQTDALLEIAAISLHFDENGWLKKYRTSHFHVSPFAGANIEKASLEFTG 78

Query: 65  ITD-----EFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQR--IN 114
           I         + +K + + IF E     +    + A  + HNA FD  F+ A  QR  I 
Sbjct: 79  IDPWHPFRNAVDEKVALTEIFGEVRKALSNLECKRAILVGHNAFFDHQFLFAATQRAAIK 138

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++        +  L   C   GI+ + +  H AL D+   +D++  +
Sbjct: 139 RNPFHPFSCFDTATLGGVA--LGQTVLARACIAAGISFNQKEAHSALYDADKTADLFCHI 196

Query: 175 M 175
           +
Sbjct: 197 V 197


>gi|296273686|ref|YP_003656317.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM
           7299]
 gi|296097860|gb|ADG93810.1| DNA polymerase III, epsilon subunit [Arcobacter nitrofigilis DSM
           7299]
          Length = 279

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 13/178 (7%)

Query: 3   RKNKMRKIVF---DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           ++N+++  VF   DIET G +    ++IEIGAV+L    K       +      K+ P  
Sbjct: 70  KENQIKDQVFCIVDIETNGSNVNKGQVIEIGAVKL----KNGEIIDSYESLVYAKDVPPY 125

Query: 60  LK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           ++ +  IT   LKD P   ++  EF  F   ++  ++AH+ KFD  FI+   ++ N   L
Sbjct: 126 IQEVTNITPSMLKDAPVLKTVLEEFKIFL--EDDVFVAHDIKFDYRFISESFKKYNLGEL 183

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKM 174
             +R + T+ +++R   + R  L+ L     I I   HR+   AL  +++L +   K+
Sbjct: 184 H-NRKLCTIDLSKRTIEAQRYGLDFLKDLLHIDIDTQHRAYSDALSTTYILKESLSKL 240


>gi|187734182|ref|YP_001880647.1| exodeoxyribonuclease X [Shigella boydii CDC 3083-94]
 gi|187431174|gb|ACD10448.1| exodeoxyribonuclease X [Shigella boydii CDC 3083-94]
          Length = 220

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|331663335|ref|ZP_08364245.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA143]
 gi|331059134|gb|EGI31111.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA143]
          Length = 220

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|229822935|ref|ZP_04449005.1| hypothetical protein GCWU000282_00227 [Catonella morbi ATCC 51271]
 gi|229787748|gb|EEP23862.1| hypothetical protein GCWU000282_00227 [Catonella morbi ATCC 51271]
          Length = 828

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 100/197 (50%), Gaps = 14/197 (7%)

Query: 2   IRKNKMRKIVFDIETTG--LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           ++   +R  V D+ETTG  LD + D+II+IGAV L++  +      + L P   +N P  
Sbjct: 1   MKAKGIRIAVVDLETTGSHLD-QGDQIIQIGAV-LIEDGQVLAQHSMLLNP--ERNIPTH 56

Query: 60  LK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           +  + GI  + ++D P+FS +   +++    ++  ++AHN  FD+ F+ A+      D  
Sbjct: 57  ITAITGIQSDQVQDAPTFSQVAGLWYERL--KDCFFVAHNLGFDLTFLQAKFAEQGLDFQ 114

Query: 119 DPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            P+  +DT+ +A+   P +   +L  L + +G+    +  H AL D+ + + +   +   
Sbjct: 115 PPA--LDTVQLAKIFLPQAPGFNLQDLSQFFGLNF--QDAHDALGDARMTAHLLDVLAHQ 170

Query: 178 GSQINFGFKTNEDRFFK 194
            + +++G K      FK
Sbjct: 171 AADLDYGTKLALQPIFK 187


>gi|332299738|ref|YP_004441659.1| Exonuclease RNase T and DNA polymerase III [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176801|gb|AEE12491.1| Exonuclease RNase T and DNA polymerase III [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 255

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGITD 67
           +VFDIE TGLD  NDRIIE+  ++L+ D  +  RT +     N     P E+  +HGITD
Sbjct: 10  VVFDIEATGLDITNDRIIELTILKLMPDGERIVRTRRF----NPEMPIPAESTAIHGITD 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIID 125
           E ++D P F +      +  +    +   +N+ +FD+  +  E  R   +  L   + ID
Sbjct: 66  EDVRDCPPFRACAKSLAELID--GCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLSRQHID 123

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +I  +  P +    +   C R      H   HGA  D+    DV +  +
Sbjct: 124 VQTIFHKMEPRTLEGAVRFYCHR-----EHIGAHGAEADTIATLDVLLAQL 169


>gi|304382373|ref|ZP_07364875.1| DNA polymerase III epsilon chain [Prevotella marshii DSM 16973]
 gi|304336490|gb|EFM02724.1| DNA polymerase III epsilon chain [Prevotella marshii DSM 16973]
          Length = 284

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 9/141 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGLD  NDRII++  +++L      R   +F+ P  R    E ++L GITD+ 
Sbjct: 10  IVFDLETTGLDLVNDRIIQLSYIKVLPDGTELRK-NIFINPE-RSIPKEVVELTGITDDD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD-PLDPSRIIDTL 127
           +K+ P+F  +  +  + F  +  ++  +N+  FD+  +  E  R   D      R+ID  
Sbjct: 68  VKEAPTFKEMAPDLNNEF--RGCDFAGYNSNHFDIPMLAEEFLRAGIDFDFSKCRLIDAQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
           +I    H   R  L +  K Y
Sbjct: 126 TIF---HKMERRHLAAAYKFY 143


>gi|320011539|gb|ADW06389.1| DNA polymerase III, epsilon subunit [Streptomyces flavogriseus ATCC
           33331]
          Length = 346

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 10/186 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRII      L         +   + P   +  P  + +HG+T + L
Sbjct: 34  VVDVETTGL-ARDDRIISAAVYRLDARGDVEDHWYTLVNP---ERDPGPVWIHGLTSDVL 89

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  + +E  +    +    +AHNA FD   I  E  R         R+  T+++A
Sbjct: 90  EGAPLFPQVAAELSERLAGRVL--VAHNAAFDWSMIAREYARAAVTAPVEQRLC-TIALA 146

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           +  + P   + L SL   +G+   H   H AL D+ +L++ +   +   ++        E
Sbjct: 147 KELRLPLPNHKLESLAAHFGVVQQH--AHHALDDARVLAEAFRPSLHAAAKGGVRLPLLE 204

Query: 190 DRFFKE 195
            R   E
Sbjct: 205 CRPLTE 210


>gi|297568933|ref|YP_003690277.1| DNA polymerase III, epsilon subunit [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924848|gb|ADH85658.1| DNA polymerase III, epsilon subunit [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 238

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 9/125 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD E TGL+ + D I+ IGAV++ +       TF V++ P+ R    ++  +H IT +
Sbjct: 41  VVFDTELTGLNRQRDEIVSIGAVKIRNLQILVGETFHVYIKPS-RALPKDSTLIHRITPQ 99

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-----INKDPLDPSRI 123
            ++  P  +++  +F  F  +  A  + H    DV F+N   +R     ++   LD  R+
Sbjct: 100 QIEQAPQLATVLPDFISFCGQ--ALLVGHYVGLDVAFLNRACRRHYGAVVSNPCLDTMRL 157

Query: 124 IDTLS 128
             T +
Sbjct: 158 AQTYT 162


>gi|328957363|ref|YP_004374749.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Carnobacterium sp. 17-4]
 gi|328673687|gb|AEB29733.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Carnobacterium sp. 17-4]
          Length = 940

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 90/167 (53%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V DIETTG + +  DR+I+ G V L++  K    F   + P    + P+ ++ L G++++
Sbjct: 12  VVDIETTGGNVTSGDRMIQFGCV-LIEDDKIVHRFATTVNP--LTSIPKQIEHLTGLSNK 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F  + +  ++    ++   +AHN +FD  F++ ELQR    P   ++ IDT+ 
Sbjct: 69  SVALAPYFEDVAATIYNLL--EDCIIVAHNIQFDYIFLSGELQRCGM-PALKNKGIDTVE 125

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +A+   P+ S   LN L  ++   I H + H A  D+ + +++++++
Sbjct: 126 LAQILLPTESSYRLNDLVSKFN--IEHTNPHQADSDAAVTAELFLEL 170


>gi|160902928|ref|YP_001568509.1| DNA polymerase III PolC [Petrotoga mobilis SJ95]
 gi|160360572|gb|ABX32186.1| DNA polymerase III, alpha subunit [Petrotoga mobilis SJ95]
          Length = 1388

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 85/166 (51%), Gaps = 7/166 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL+   + IIEIGAV++ +    ++ F   + P  +  S       GIT++ 
Sbjct: 383 VVFDLETTGLEPAMNEIIEIGAVKIKNMKIVSK-FHRLVKPR-KPVSNFTSNFTGITNQM 440

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+ +     +  +F  F   + A  +AHNA FD  FI   ++R+  +  + +  IDT+++
Sbjct: 441 LEVEKPIEEVLPQFLSFI--EGAVLVAHNAIFDYRFIREWVRRVYNEHFEQTY-IDTVAL 497

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++         L  + +   + +     H A  D+++ + V++K++
Sbjct: 498 SKSLLTLKSYGLAKVVEE--LKLGSFEHHRAHEDANITALVFLKLI 541


>gi|144901019|emb|CAM77883.1| DNA polymerase III epsilon chain-like protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 619

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 11/170 (6%)

Query: 10  IVFDIETTGL-DSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + FD ETTGL   + DR+I++GAV +      +  +F+  + P G     +++  HGI++
Sbjct: 431 VAFDCETTGLRPDQGDRLIQVGAVRIGQGRVLSGESFERLIDP-GIPIPAQSMAYHGISN 489

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +K KP  + +  +F        +    HN  FD+ F++A           P  ++DT+
Sbjct: 490 DMVKGKPPLAVVLPQF--AAFAGASALAGHNVAFDLKFLHAAQGETGIALRQP--VLDTM 545

Query: 128 SIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMV 176
            +A    P     L ++  R G+  + HRS   AL D+ + +++  +++ 
Sbjct: 546 ILAALLDPGYDLSLEAVAGRLGVPPLPHRS---ALSDALVTAEILARLIA 592


>gi|291531228|emb|CBK96813.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium siraeum 70/3]
          Length = 458

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 13/173 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPE--ALKLHGIT 66
           +V+D+ETTGL+S+   +I+IGAV+++D     ++TF+  + P   K S      K+ GIT
Sbjct: 272 VVYDLETTGLNSEFHAVIQIGAVKVVDGVVDESQTFEELVNPKYSKVSVSDNITKITGIT 331

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE  K+      +  EF  F  +       +NA FD  F+  E    + + +  ++  D 
Sbjct: 332 DEEAKNARQVWEVIPEFVKFIGDDTLAGF-NNAAFDSKFL--ERAGRHSNIIITNKQFDI 388

Query: 127 LSIARRKHPSSR-----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  A+R           ++LN+  + +G  I +   H AL D+   + VYIK+
Sbjct: 389 MKYAKRIKKKCNLEINGDELNNYAEYFG--IKNEKAHTALSDAITTAKVYIKL 439


>gi|157161311|ref|YP_001458629.1| exodeoxyribonuclease X [Escherichia coli HS]
 gi|157066991|gb|ABV06246.1| exodeoxyribonuclease X [Escherichia coli HS]
          Length = 220

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|256831880|ref|YP_003160607.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans
           DSM 20603]
 gi|256685411|gb|ACV08304.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans
           DSM 20603]
          Length = 238

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 21/154 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+D+ +DR++      L+  +    T   +L   G     EA ++HGIT E+  
Sbjct: 11  FDTETTGVDTAHDRVV---TAALVLRTGEVTTVDTWLIDPGVPIPDEAARIHGITTEYAV 67

Query: 72  DKP-----SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--------KDPL 118
           +       + S I     D  + Q    +A NA FDV  + AEL R            P+
Sbjct: 68  EHGANPVDALSVIADRIVDHMS-QGWALVAFNATFDVCIVEAELARHGLPTLAQRLGGPV 126

Query: 119 DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGI 150
            P  +ID L + R   ++   +  L +LC  YG+
Sbjct: 127 AP--VIDPLVLDRAVDRYRRGQRKLANLCSEYGV 158


>gi|90022074|ref|YP_527901.1| ribonuclease T [Saccharophagus degradans 2-40]
 gi|89951674|gb|ABD81689.1| RNAse T [Saccharophagus degradans 2-40]
          Length = 231

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NGRKNSPEALKLHG 64
           ++ D+ET G +S  D ++EI AV L +D       + TF   + P  G      AL   G
Sbjct: 26  VIVDVETGGFNSHTDALLEIAAVTLRMDEDGVLHRHETFDFHVDPFEGANIEQSALDFTG 85

Query: 65  I---TDE--FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I   +D+   + +  + + IF        E     A  +AHNA FD+GF+NA   R  + 
Sbjct: 86  IDLDSDDRCAVPEDIAINEIFRSVRKAVKENGCNRAVMVAHNAHFDLGFVNAASNRCDVK 145

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++      +   L   C+   I  S+R  H A  D+   +D++  +
Sbjct: 146 RNPFHPFSCFDTATLSGLAFGHTV--LARACQLAKIEFSNREAHSAAYDAEKTADLFCTI 203

Query: 175 M 175
           +
Sbjct: 204 V 204


>gi|31794883|ref|NP_857376.1| DNA polymerase III subunit epsilon [Mycobacterium bovis AF2122/97]
 gi|121639627|ref|YP_979851.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224992123|ref|YP_002646812.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260184632|ref|ZP_05762106.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           CPHL_A]
 gi|289445310|ref|ZP_06435054.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           CPHL_A]
 gi|31620481|emb|CAD95924.1| PUTATIVE DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ [Mycobacterium
           bovis AF2122/97]
 gi|121495275|emb|CAL73761.1| Putative dna polymerase III (epsilon subunit) dnaQ [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|224775238|dbj|BAH28044.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289418268|gb|EFD15469.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           CPHL_A]
          Length = 329

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
            D+P F+ I  E  D    +    +AHN  FD  F+ AE +    + P+D   ++ T+ +
Sbjct: 75  DDQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR      N  L +L   +G  +  +  H A  D+ +L+ +    +
Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDARVLTGILAAAL 175


>gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
           MA-4680]
 gi|29610102|dbj|BAC74150.1| putative DNA polymerase III epsilon subunit [Streptomyces
           avermitilis MA-4680]
          Length = 325

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 10/162 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRII      L    +    +   + P   +  P  + +HG+T + L
Sbjct: 24  VVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTMVNP---ERDPGPVWIHGLTSDVL 79

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  I +EF     ++    +AHNA FD   I  E  R         R+  T++++
Sbjct: 80  EGAPLFEDIAAEFASRLADRV--LVAHNAVFDWSMIAREYARAKSQAPVRQRLC-TIALS 136

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +    P   + L SL   +G+ +  R+ H AL D+ +L++ +
Sbjct: 137 KELGLPLPNHKLESLAAHFGV-VQQRAHH-ALDDARVLAEAF 176


>gi|283785581|ref|YP_003365446.1| exodeoxyribonuclease X [Citrobacter rodentium ICC168]
 gi|282949035|emb|CBG88638.1| exodeoxyribonuclease X [Citrobacter rodentium ICC168]
          Length = 220

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVVD-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    I   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDIIPHYY------GSEWYVAHNASFDSRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           +RR  P  +    +L K   + +   +    H AL D ++ + + I +M
Sbjct: 103 SRRLWPGIKYSNMALYKSRKLNVQTPAGLHHHRALYDCYITAALLIDIM 151


>gi|215424954|ref|ZP_03422873.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T92]
 gi|289748229|ref|ZP_06507607.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T92]
 gi|289688816|gb|EFD56245.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T92]
          Length = 329

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
            D+P F+ I  E  D    +    +AHN  FD  F+ AE +    + P+D   ++ T+ +
Sbjct: 75  DDQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR      N  L +L   +G  +  +  H A  D+ +L+ +    +
Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDARVLTGILAAAL 175


>gi|182417780|ref|ZP_02949096.1| putative exonuclease [Clostridium butyricum 5521]
 gi|237667945|ref|ZP_04527929.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182378504|gb|EDT76035.1| putative exonuclease [Clostridium butyricum 5521]
 gi|237656293|gb|EEP53849.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 975

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 11/138 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  DIETTGLD  +  IIEIGA++  D + T  TF+  + P GR          G++ E 
Sbjct: 13  IYLDIETTGLDETSSEIIEIGAIKFKDNTIT--TFETLIRPRGRVPIGIYNLCTGLSKEE 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   PS  ++      F   ++   I HN  F+  F    L +I       + I+D++ +
Sbjct: 71  LYSAPSLGNVRESLSQFL--EDLPLICHNGNFEKKFFRYHLPQIK------NTIMDSMEL 122

Query: 130 ARRKHPSSRN-DLNSLCK 146
           A    P  +  +LN+L K
Sbjct: 123 AAILEPYHKEYNLNALMK 140


>gi|283832758|ref|ZP_06352499.1| exodeoxyribonuclease 10 [Citrobacter youngae ATCC 29220]
 gi|291072441|gb|EFE10550.1| exodeoxyribonuclease 10 [Citrobacter youngae ATCC 29220]
          Length = 220

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVVD-GKIVNPMSNLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    I  +++       ++W +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDIIPQYY------GSDWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           +RR  P  +    +L K   +++   +    H AL D ++ + + I +M
Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPAGLHHHRALYDCYITAALLIDIM 151


>gi|288932698|ref|YP_003436758.1| DNA polymerase III subunit epsilon [Ferroglobus placidus DSM 10642]
 gi|288894946|gb|ADC66483.1| DNA polymerase III, epsilon subunit [Ferroglobus placidus DSM
           10642]
          Length = 200

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 88/185 (47%), Gaps = 14/185 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL+ K D II I  +  +D  K   +   +     R+   +++K HGIT   +
Sbjct: 8   VVDVETTGLNVKKDEIISIAIIP-MDGLKILFSEAYYRILKPRRFKIDSVKYHGITPRMV 66

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ P+F  +  E  +  NE+    + ++   D+ F+    +    + +   + +D   + 
Sbjct: 67  EEAPTFCEVKEEILEKLNERI--IVGYSINLDIEFLKKSFKEC--EVVFECKYVDIADVE 122

Query: 131 R---RKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +   R       D  L  L K+YG+ +++R  H AL D+++ + ++   ++    + +G 
Sbjct: 123 KLVGRLFGDYMKDVTLEDLAKKYGVDVAYR--HSALSDAYITAQIFQMQLL--RLLKYGL 178

Query: 186 KTNED 190
           +  ED
Sbjct: 179 RKFED 183


>gi|154496866|ref|ZP_02035562.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC
           29799]
 gi|150273824|gb|EDN00937.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC
           29799]
          Length = 191

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 10/175 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I FD+ET   +  NDR+  IG + +++  +    +   + P  R +    + L GIT 
Sbjct: 4   RYIAFDVETP--NYANDRMSAIG-ITVVEAGEIAGEYYTLVNPEQRFDRFN-IALTGITP 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + DKP+F  ++ E     +  +   IAHNA FD+  +   L+          R   T 
Sbjct: 60  EMVADKPTFPELWREIGPLMD--SGLLIAHNAPFDMSVLAKCLRDYGICWHPTVRYACTC 117

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++RR  P   N  LN+L    G+ + H   H A  DS    ++ +  + GG+ +
Sbjct: 118 QMSRRLLPQLPNHKLNTLSDYLGLELDH---HHAGSDSMACGEILLYHLRGGASV 169


>gi|27904678|ref|NP_777804.1| ribonuclease T [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|29611836|sp|P59497|RNT_BUCBP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|27904075|gb|AAO26909.1| ribonuclease T [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 217

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIET G + + D I+EI  + L        +        + P  G +   +A++ HG
Sbjct: 20  VVIDIETAGFNPETDAILEIAIITLKMNEFGLLEKEHLLHFHIQPFKGSRIDKKAIEFHG 79

Query: 65  ITDEF------LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113
           I D F      + +  +  SIF+         N      +AHNA FD  F+ A + R  I
Sbjct: 80  I-DPFSPLRRAISEYEALYSIFNLIHKGIKSNNCTKSIIVAHNAIFDYNFLTAAITRTKI 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             +P     I DT +++       +  L   CK  G+T  +   H AL D+   ++++ K
Sbjct: 139 KNNPFHSFVIFDTATLSGLA--VGQTVLARACKAIGLTFDNNQAHSALYDTQQTANLFCK 196

Query: 174 MM 175
           ++
Sbjct: 197 IV 198


>gi|188589009|ref|YP_001921284.1| putative exonuclease [Clostridium botulinum E3 str. Alaska E43]
 gi|188499290|gb|ACD52426.1| putative exonuclease [Clostridium botulinum E3 str. Alaska E43]
          Length = 974

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 16/158 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK--LHGITD 67
           I  DIETTGLD  N  IIEIGAV++ + S T  T++V + P G  N P ++     G+ +
Sbjct: 12  IYLDIETTGLDENNCEIIEIGAVKIKNLSVT--TYEVLIRPKG--NVPVSIYKLCQGLKE 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L +      I  E   F   ++   I HN  F+  F++  +  I  +  D   +   L
Sbjct: 68  EDLMNSRHLEDIKKELLVFL--EDLPLICHNGGFERKFLSYHIPEIKNEIFDSMELSAIL 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK-HGALLDS 164
              R+++     +L+SL K   ITI  + + H  L DS
Sbjct: 126 EPWRKEY-----NLDSLIK--SITILDKDEFHRGLEDS 156


>gi|301155716|emb|CBW15184.1| ribonuclease T (RNase T) [Haemophilus parainfluenzae T3T1]
          Length = 229

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 20/190 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L +D +   + ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGNLQPDQKCHFHIEPFEGANI 73

Query: 56  SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFF--NEQNAEW-----IAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +      +++AE      +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDAECQRSIIVAHNAAFDQSFVM 133

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R  + ++P  P  + DT ++A       +  L   C+   I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTATLAGFMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMM 175
             ++++  M+
Sbjct: 192 RTAELFCYMV 201


>gi|301645642|ref|ZP_07245570.1| exonuclease [Escherichia coli MS 146-1]
 gi|301076071|gb|EFK90877.1| exonuclease [Escherichia coli MS 146-1]
          Length = 220

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNVALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|157374989|ref|YP_001473589.1| ribonuclease T [Shewanella sediminis HAW-EB3]
 gi|157317363|gb|ABV36461.1| ribonuclease T [Shewanella sediminis HAW-EB3]
          Length = 223

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G +++ D ++EI AV +L          ++T    + P  G    PEAL   
Sbjct: 20  VVIDVETAGFNAQTDALLEI-AVTMLKMDDEGVLGLDKTLHYHIEPFEGANLEPEALAFT 78

Query: 64  GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113
           GI  T+     + +K +F  IF E               +AHNA FD GF++  ++R  +
Sbjct: 79  GIDPTNPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVSKAVERNGL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT ++A          L   C   GI   +   H AL D+   ++++  
Sbjct: 139 KRTPFHPFATFDTATLAGLA--IGHTVLAKACSIAGIPFDNNEAHSALYDTERTAELFCL 196

Query: 174 MM 175
           ++
Sbjct: 197 IV 198


>gi|253773201|ref|YP_003036032.1| exodeoxyribonuclease X [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161904|ref|YP_003045012.1| exodeoxyribonuclease X [Escherichia coli B str. REL606]
 gi|297519020|ref|ZP_06937406.1| exodeoxyribonuclease X [Escherichia coli OP50]
 gi|242377565|emb|CAQ32320.1| exonuclease X [Escherichia coli BL21(DE3)]
 gi|253324245|gb|ACT28847.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973805|gb|ACT39476.1| exodeoxyribonuclease X [Escherichia coli B str. REL606]
 gi|253977999|gb|ACT43669.1| exodeoxyribonuclease X [Escherichia coli BL21(DE3)]
          Length = 220

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAIAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|219559793|ref|ZP_03538869.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T17]
 gi|289571955|ref|ZP_06452182.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T17]
 gi|289545709|gb|EFD49357.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T17]
          Length = 284

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 11/180 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
            D+P F+ I  E  D    +    +AHN  FD  F+ AE +    + P+D   ++ T+ +
Sbjct: 75  DDQPQFADIAGEVVDVLRGRTL--VAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           ARR      N  L +L   +G  +  +  H A  D+ +L+ +    +    +++     +
Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDARVLTGILAAALESARELDVWLPVH 188


>gi|329903276|ref|ZP_08273408.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548440|gb|EGF33116.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 216

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 15/186 (8%)

Query: 15  ETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDK 73
           ETTG+  +  DR+ E+ A+ ++     +R   +  C    + SP   +L GIT   +   
Sbjct: 5   ETTGMSPALGDRVTEVAALRIVGGVVVDRFVSLINC--DVRISPFISQLTGITQAMVDRA 62

Query: 74  PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK 133
           P    +  E   F         AHN  FD  F+ AE  R+   P   + +I ++ ++RR 
Sbjct: 63  PPVEQVMPELVRFIGSD--ALAAHNVSFDEKFLLAESARLGIVPAH-AGVICSVKLSRRV 119

Query: 134 HPSSRN-DLNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
            P  R+  L +L    GI     +HR++  A + S L+  ++I   +G    ++G +  +
Sbjct: 120 FPGLRSYALGALANSLGIRFKGTAHRAEADAEVASALM--LHIAAHLGD---HYGIREVD 174

Query: 190 DRFFKE 195
            RF ++
Sbjct: 175 PRFLQQ 180


>gi|289755840|ref|ZP_06515218.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon
           [Mycobacterium tuberculosis EAS054]
 gi|289696427|gb|EFD63856.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon
           [Mycobacterium tuberculosis EAS054]
          Length = 330

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
            D+P F+ I  E  D    +    +AHN  FD  F+ AE +    + P+D   ++ T+ +
Sbjct: 75  DDQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR      N  L +L   +G  +  +  H A  D+ +L+ +    +
Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDARVLTGILAAAL 175


>gi|282849748|ref|ZP_06259132.1| UvrD/REP helicase [Veillonella parvula ATCC 17745]
 gi|282580685|gb|EFB86084.1| UvrD/REP helicase [Veillonella parvula ATCC 17745]
          Length = 862

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 6/155 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+E+TG D+  DRII+I A+ + +  +    F+ F+ P       E  ++HG +D +
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLEAFERFINPGIPVGQSE--EVHGFSDAY 552

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L++     +I  + +  F+ +NA  + HN  +DV     EL R N    +   I DTL I
Sbjct: 553 LQEHGEEPAIVLQAFKEFS-KNAIIVGHNVNYDVTIFTNELARHNLGNPEFKAIYDTLDI 611

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163
            RR +P+  N  L  L  ++   I H   H A+ D
Sbjct: 612 YRRFYPNLPNHKLGFLASKF--PIHHEPTHNAMDD 644


>gi|29374711|ref|NP_813863.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
 gi|227555735|ref|ZP_03985782.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
 gi|256761903|ref|ZP_05502483.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|29342169|gb|AAO79935.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
 gi|227175140|gb|EEI56112.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
 gi|256683154|gb|EEU22849.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|315573941|gb|EFU86132.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecalis TX0309B]
 gi|315581892|gb|EFU94083.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecalis TX0309A]
          Length = 289

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 16/169 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FDIETTGLD   D +I+I A   +D  + +  F   +  N      E  KL GIT++ 
Sbjct: 9   IAFDIETTGLDFHQDAVIQISAARYVDGIEVDY-FDTLV--NSDYIPDEITKLTGITNDQ 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDT-L 127
           + + P+   +    +D+  +     + HN K FD  F+ A+   I     +   I DT  
Sbjct: 66  VLNAPTLDEVMPYLFDYLGD--TILVGHNIKSFDFPFLKAKGYNI----AEGHEIYDTRY 119

Query: 128 SIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMM 175
             A RKH +  N L +L   +GI  ISH     AL D  + + V+++++
Sbjct: 120 FAATRKHGAVNNQLTTLKLLFGIDAISHN----ALNDVRISAIVFMELL 164


>gi|260198755|ref|ZP_05766246.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T46]
 gi|289441146|ref|ZP_06430890.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T46]
 gi|289414065|gb|EFD11305.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T46]
          Length = 319

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
            D+P F+ I  E  D    +    +AHN  FD  F+ AE +    + P+D   ++ T+ +
Sbjct: 75  DDQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR      N  L +L   +G  +  +  H A  D+ +L+ +    +
Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDARVLTGILAAAL 175


>gi|239945175|ref|ZP_04697112.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
 gi|239991636|ref|ZP_04712300.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           11379]
 gi|291448639|ref|ZP_06588029.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998]
 gi|291351586|gb|EFE78490.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998]
          Length = 237

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 13/155 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI-TDE 68
           + FD+ETTG D ++DRI+    V  LD   T    + +L   G     +A  +HGI TD 
Sbjct: 9   VGFDLETTGTDVESDRIVTAALVR-LDPDGTVAEQRTWLLDPGVVIPEQASAIHGIGTDH 67

Query: 69  FLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLD------ 119
             K     +S   E      E    +   +  NA++D+  ++ E +R     ++      
Sbjct: 68  ARKHGTRAASAVEEIAHAVAEVLRSDVPLVVMNARYDLSLLDRECRRYGLPSVEERVDGA 127

Query: 120 PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
           PS +ID L I +   K+   +  L +LC  YG+T+
Sbjct: 128 PSPVIDPLVIDKHVDKYRKGKRALQALCDHYGVTL 162


>gi|114321417|ref|YP_743100.1| ribonuclease T [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227811|gb|ABI57610.1| RNAse T [Alkalilimnicola ehrlichii MLHE-1]
          Length = 216

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 23/184 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD-----YSKTNRTFQV--FLCPNGRKNSPEALK 61
           +V D+ET GL++  D +++I AV L +D     Y     T  V  F    G    P+AL+
Sbjct: 25  VVVDVETGGLNAATDALLQIAAVVLRMDENGRLYPAATHTCHVKPF---EGANIDPKALE 81

Query: 62  LHGITDEF-----LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR- 112
           L+GI  +      L +  +   +F        +     A  I HN+ FD+GF+NA +QR 
Sbjct: 82  LNGIDPDHPLRMALPEDEALKKVFRPIRQEVRQTGCNRAVLIGHNSFFDLGFLNAAVQRC 141

Query: 113 -INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            I ++P  P    DT ++A   +   +  L       G     ++ H A+ D+   +D++
Sbjct: 142 GIKRNPFHPFTSFDTATLAGLAY--GQTVLAKALVASGEEWDGKAAHSAIYDAEKTADLF 199

Query: 172 IKMM 175
             ++
Sbjct: 200 CGIV 203


>gi|15598724|ref|NP_252218.1| ribonuclease T [Pseudomonas aeruginosa PAO1]
 gi|107103040|ref|ZP_01366958.1| hypothetical protein PaerPA_01004109 [Pseudomonas aeruginosa PACS2]
 gi|116051527|ref|YP_789637.1| ribonuclease T [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218890245|ref|YP_002439109.1| ribonuclease T [Pseudomonas aeruginosa LESB58]
 gi|254242188|ref|ZP_04935510.1| ribonuclease T [Pseudomonas aeruginosa 2192]
 gi|296387969|ref|ZP_06877444.1| ribonuclease T [Pseudomonas aeruginosa PAb1]
 gi|313108873|ref|ZP_07794856.1| ribonuclease T [Pseudomonas aeruginosa 39016]
 gi|14548235|sp|Q9HY82|RNT_PSEAE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|122260667|sp|Q02QZ9|RNT_PSEAB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|9949677|gb|AAG06916.1|AE004773_5 ribonuclease T [Pseudomonas aeruginosa PAO1]
 gi|115586748|gb|ABJ12763.1| ribonuclease T [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126195566|gb|EAZ59629.1| ribonuclease T [Pseudomonas aeruginosa 2192]
 gi|218770468|emb|CAW26233.1| ribonuclease T [Pseudomonas aeruginosa LESB58]
 gi|310881358|gb|EFQ39952.1| ribonuclease T [Pseudomonas aeruginosa 39016]
          Length = 224

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI A  + +D   +     T+   + P  G    P AL+  G
Sbjct: 32  VVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTG 91

Query: 65  ITDEF-----LKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQR--IN 114
           I  +      ++++ + + IF            + A  + HN+ FD+GF+NA + R  I 
Sbjct: 92  IKLDHPLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIK 151

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+  G+   +R  H A  D+   ++++  +
Sbjct: 152 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGI 209

Query: 175 M 175
           +
Sbjct: 210 V 210


>gi|315127531|ref|YP_004069534.1| DNA polymerase, exonuclease activity [Pseudoalteromonas sp. SM9913]
 gi|315016045|gb|ADT69383.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas
           sp. SM9913]
          Length = 207

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 16/186 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K R +V D+E TGLD K   I+ +  V L+D      +    L     K+  ++   HGI
Sbjct: 22  KQRYLVIDLELTGLDPKQHEIVSVAWV-LIDNECIKNSLSQHLVNKEVKSLEQSPVFHGI 80

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +    S  SI +     F+  +   + HNA  D GF+   L+        P  IID
Sbjct: 81  STDSVAQGQSLQSIITSLSAHFS--DCILVFHNAMLDWGFLKLALKNAGITQ-RPKLIID 137

Query: 126 TLSIARRKHPSSRND-------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           TL I +++     +D       LN   KRY +   H   H AL D+   +++   ++   
Sbjct: 138 TLQIEKKRLLKHSSDIKLDDLTLNECRKRYDLPSYH--CHHALTDAQATAEL---LLAQC 192

Query: 179 SQINFG 184
            QI+ G
Sbjct: 193 HQISAG 198


>gi|215432688|ref|ZP_03430607.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           EAS054]
          Length = 347

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
            D+P F+ I  E  D    +    +AHN  FD  F+ AE +    + P+D   ++ T+ +
Sbjct: 75  DDQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR      N  L +L   +G  +  +  H A  D+ +L+ +    +
Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDARVLTGILAAAL 175


>gi|148656137|ref|YP_001276342.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1]
 gi|148568247|gb|ABQ90392.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1]
          Length = 233

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 88/187 (47%), Gaps = 29/187 (15%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           V D+ETTGL+ + D ++ IG V++ D       R + +   P+    +PEA+++HG+  +
Sbjct: 40  VIDVETTGLNPRRDALLAIGLVDIDDGRIRMDQRWYTLVRPPDDAPVNPEAIRVHGLLPQ 99

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIIDTL 127
            ++  P    +          +    + H A  D+GF+   L+R+ + DP  P+  IDT 
Sbjct: 100 DVEQAPPPGDVLPVLLRRLTGR--VLVVHVADIDIGFLRQALRRLYQVDPRGPA--IDTA 155

Query: 128 SIA------------RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +A              + P+ +  L +L +  G+ +   ++H AL D+   + V++   
Sbjct: 156 RLAWHFQRNQRLIDGADQEPALQ--LRALAESAGLPVY--AEHNALNDALTTAQVFL--- 208

Query: 176 VGGSQIN 182
              +QIN
Sbjct: 209 ---AQIN 212


>gi|317154702|ref|YP_004122750.1| exonuclease RNase T and DNA polymerase III [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944953|gb|ADU64004.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 179

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 16/180 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D ET   D+K D    +G V +       R +++   P  R+ +P  +++HGI  
Sbjct: 9   RFVAIDFETA--DAKRDSACAVGLVVVDRGEIVARDYRLIR-PPRRRFNPFCVQVHGIHW 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINK-DPLDPSRIID 125
           E + D+P+F  ++ +    F  + A++ +AHNA FD   + A  +      P+ P   + 
Sbjct: 66  EDVADQPAFGELWPDLSPLF--EGADFLVAHNASFDKSVLAACCRESRCLPPVQP--FLC 121

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +AR       N L ++C   GIT++H   H A  D    ++   ++ V G + N  F
Sbjct: 122 TVQLARTTWQLPSNKLPNVCCHLGITLTH---HHAASD----AEACARIAVSGLRENPAF 174


>gi|26108511|gb|AAN80713.1|AE016761_288 Exodeoxyribonuclease X [Escherichia coli CFT073]
          Length = 238

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 22  IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 76

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD        +R+   P  P   I T+ +
Sbjct: 77  ADKPWIEDVIPHYY------GSEWYVAHNASFD--------RRVL--PEMPGEWICTMKL 120

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 121 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 169


>gi|313681469|ref|YP_004059207.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154329|gb|ADR33007.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 247

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 17/128 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           + I+ D ETTG    +DRII++G + L       +  +V+  +C      S  A+++HGI
Sbjct: 3   KYILLDTETTGA-GDDDRIIQLGYMVL-----DGKNVEVYNEMCSTEVAISYGAMEVHGI 56

Query: 66  TDEFLKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           T E ++ KPS   +S F +  +     N   I HNA FD+G +  E      +     R+
Sbjct: 57  TPEMIEGKPSCRETSAFQKLCELNTSDNV-LIIHNAPFDLGMLTKE------NFSSQMRL 109

Query: 124 IDTLSIAR 131
           IDTL  AR
Sbjct: 110 IDTLRCAR 117


>gi|86130881|ref|ZP_01049480.1| exonuclease [Dokdonia donghaensis MED134]
 gi|85818292|gb|EAQ39452.1| exonuclease [Dokdonia donghaensis MED134]
          Length = 229

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 13/175 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +VFD ETTGLD K DRI+ +G V ++ +      T ++FL  +    +P++ ++HGI 
Sbjct: 45  RFVVFDTETTGLDYKKDRILSLGGVAVVGNQVIVADTLELFLKQDFY--NPDSAQIHGIL 102

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +    K +     ++  DF        + H+  FDV  +N  L+R     L   ++   
Sbjct: 103 KQGNYLKVNEKEAIAQCLDFIGTD--ILVGHHVGFDVAVVNQSLKRAGLGRLKNRQLDTE 160

Query: 127 LSIARRKHPSS------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +   R  HP +      R  L+ L +   I +  R  H A  DS + +  +IK++
Sbjct: 161 ILYKRLVHPVNRPLQDKRYTLDELAEALKIPLHDR--HTAAGDSLITALAFIKIV 213


>gi|238782582|ref|ZP_04626613.1| Ribonuclease T [Yersinia bercovieri ATCC 43970]
 gi|238796368|ref|ZP_04639877.1| Ribonuclease T [Yersinia mollaretii ATCC 43969]
 gi|238716509|gb|EEQ08490.1| Ribonuclease T [Yersinia bercovieri ATCC 43970]
 gi|238719813|gb|EEQ11620.1| Ribonuclease T [Yersinia mollaretii ATCC 43969]
          Length = 226

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 22/195 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAQTDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF        +Q    A  +AHNA FD  F+ A  +R  + 
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGLKDQGCNRAIIVAHNANFDHSFVMAAAERASLK 150

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ ++
Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCEL 208

Query: 175 M-----VGGSQINFG 184
           +     +GG  I  G
Sbjct: 209 VNRWKKLGGWPIPAG 223


>gi|254524060|ref|ZP_05136115.1| ribonuclease T [Stenotrophomonas sp. SKA14]
 gi|219721651|gb|EED40176.1| ribonuclease T [Stenotrophomonas sp. SKA14]
          Length = 194

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 19/171 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ET G DS+ + ++EI AV +      L Y     +  V +   G +  P++L++ 
Sbjct: 11  VVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHV-VPAEGLEIDPKSLEVT 69

Query: 64  GITDEFL-----KDKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +       ++K +   IF         +  Q A  + HNA FD+GF+NA + R   
Sbjct: 70  GIILDHPFRLAKEEKAALDHIFVPVRAAMKKYGCQRAILVGHNAHFDLGFVNAAVARTGH 129

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            ++P  P  + DT+++A   +   +  L       G+       H A+ D+
Sbjct: 130 KRNPFHPFSVFDTVTLAGIAY--GQTVLARAATAAGLGWDANEAHSAVYDT 178


>gi|323492356|ref|ZP_08097509.1| ribonuclease T [Vibrio brasiliensis LMG 20546]
 gi|323313403|gb|EGA66514.1| ribonuclease T [Vibrio brasiliensis LMG 20546]
          Length = 219

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 24/185 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--------ELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +V D+ET G ++K D ++EI AV        +L+  S  +   + F   N  K   EAL 
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLKMDENGDLVPASTIHFHVEPFEGANLEK---EALD 76

Query: 62  LHGITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFI--NAEL 110
            +GI D F  L+   +      E +     EQ A        +AHNA FD  F+   +E 
Sbjct: 77  FNGIRDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIMVAHNANFDHSFVMEASER 136

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            ++ + P  P    DT +++   +   +  L   CK  G+   ++  H AL D+   +++
Sbjct: 137 CKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNKEAHSALYDTQKTAEL 194

Query: 171 YIKMM 175
           +  ++
Sbjct: 195 FCGIV 199


>gi|329119491|ref|ZP_08248176.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464424|gb|EGF10724.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 484

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 8/148 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTG     DRI EI     L +     T    L    R   P   +L GI DE +
Sbjct: 45  IVDLETTGGSFDTDRITEIA---FLRFDGGTVTPYHSLVHPERPIPPFIRRLTGIGDETV 101

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P FS++  E       +    +AHN+KFD  F+     R       P+  + T+ ++
Sbjct: 102 AGAPPFSALAHELLPLL--RGCILLAHNSKFDYTFLRRAFARCGLPFAAPT--LCTVQLS 157

Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSK 157
           RR +P   ++ L S+ +R+GI  + R +
Sbjct: 158 RRLYPQFYKHSLESIIERHGIAAASRHR 185


>gi|325989695|ref|YP_004249394.1| DNA polymerase III polC-type [Mycoplasma suis KI3806]
 gi|323574780|emb|CBZ40440.1| DNA polymerase III, polC-type [Mycoplasma suis]
          Length = 1438

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 16/169 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           +FD+ETTGL+   D IIEI  ++    +  +  + +  C   +K   E + L  IT+E L
Sbjct: 396 IFDLETTGLNPIFDEIIEIFVLKYSSGTVIDHYYSLIRC--NKKLRKEIINLTHITEEKL 453

Query: 71  ----KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIID 125
               +DK    ++  E  DF +      IAHN   FD  F+N+EL++   +PLD + I+D
Sbjct: 454 NMSGRDK---LTVLQEVRDFVS--GTVLIAHNGIDFDFPFLNSELRKSGLEPLD-NPILD 507

Query: 126 TLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           TL + +      ++    L ++ K+  I +  +  H +  D+  L+ ++
Sbjct: 508 TLRLCKALEEGKKSKSYSLFAIAKKMSINVVEQELHNSEYDTRCLAKMW 556


>gi|302387397|ref|YP_003823219.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
           WM1]
 gi|302198025|gb|ADL05596.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
           WM1]
          Length = 222

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 24/202 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG+    D I+EI A+++  +          + P G      A +++GITD+ 
Sbjct: 19  VVFDLETTGISPAEDSILEISAIKVKGHEPVAE-LNTLVNP-GTHIPAGATRINGITDDM 76

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLS 128
           +K  P    +  +F  F   +    + HN + FD+ F+    Q +    + P+  +DTL 
Sbjct: 77  VKAAPGLKEVLPDFLSFI--EGEILVGHNIQSFDLLFLYRAAQELFGKEV-PNDYVDTLF 133

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P   R+ L  +   +   I+    H AL D  +    Y +M   G  ++     
Sbjct: 134 MAKTTLPQLGRHRLTDISAYF--HINTEGAHRALSDCVMNQKCYEQM---GKLVH----- 183

Query: 188 NEDRFFKEEKKTVPNI-SLLKR 208
                 KEE +  P   S+LKR
Sbjct: 184 ------KEEAEICPQCGSVLKR 199


>gi|319440529|ref|ZP_07989685.1| DNA polymerase III subunit epsilon [Corynebacterium variabile DSM
           44702]
          Length = 214

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 21/182 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFL--CPNGRKNSPEALKLH 63
           +  D+ETTGLD K DR++ IG V L    +D S      +V L    +      E+  LH
Sbjct: 27  LAVDVETTGLDPKRDRLLSIGWVPLDGRVIDLSGAR---EVILRDTVDHDAGVGESATLH 83

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G+TD+ +           E  +    +    +AH A  + GF++A  +R      +   +
Sbjct: 84  GLTDDTVATGIPAGEALGELLEAI--RGRALLAHFAVMETGFLDAVCRRELGLRFEVP-V 140

Query: 124 IDTLSIARR------KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +DTL + RR       +P   +  L  + +RYG  + + S H A+ D+   +++Y+ +  
Sbjct: 141 VDTLDLERRHMERMGTYPRGEDLRLPRVRQRYG--LPYYSNHRAVTDALACAELYLALTA 198

Query: 177 GG 178
           GG
Sbjct: 199 GG 200


>gi|325973260|ref|YP_004250324.1| DNA polymerase III PolC [Mycoplasma suis str. Illinois]
 gi|323651862|gb|ADX97944.1| DNA polymerase III, PolC [Mycoplasma suis str. Illinois]
          Length = 1438

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 16/169 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           +FD+ETTGL+   D IIEI  ++    +  +  + +  C   +K   E + L  IT+E L
Sbjct: 396 IFDLETTGLNPIFDEIIEIFVLKYSSGTVIDHYYSLIRC--NKKLRKEIINLTHITEEKL 453

Query: 71  ----KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIID 125
               +DK    ++  E  DF +      IAHN   FD  F+N+EL++   +PLD + I+D
Sbjct: 454 NMSGRDK---LTVLQEVRDFVS--GTVLIAHNGIDFDFPFLNSELRKSGLEPLD-NPILD 507

Query: 126 TLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           TL + +      ++    L ++ K+  I +  +  H +  D+  L+ ++
Sbjct: 508 TLRLCKALEEGKKSKSYSLFAIAKKMSINVVEQELHNSEYDTRCLAKMW 556


>gi|78777804|ref|YP_394119.1| DNA polymerase III subunit epsilon [Sulfurimonas denitrificans DSM
           1251]
 gi|78498344|gb|ABB44884.1| Exonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 266

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 12/190 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIET G   +  +IIEI A+++ +     R   +  C    + +P   ++ GI+    
Sbjct: 73  IVDIETNGSKIEKHQIIEIAALKVKNGLVVERFESLVEC---HEINPHITEITGISTNET 129

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P+   +  +F  F    +A +IAH+ KFD  FI+  +Q+I   PL  +R + +LS+A
Sbjct: 130 IDAPNLKKVMYDFRTFLG--DAVFIAHDVKFDYKFISLSMQKIGLPPL-LNRSLCSLSLA 186

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
            R   S R  L+ L   + +     + H A+ D   +   Y    +  + ++   KT ED
Sbjct: 187 ERTIESYRYALSYLNTIFNLH-PEATHHRAMSD---VITTYELFKLSLNSVDKEVKTVED 242

Query: 191 --RFFKEEKK 198
             RF KE K+
Sbjct: 243 LIRFSKEAKR 252


>gi|238792291|ref|ZP_04635926.1| Ribonuclease T [Yersinia intermedia ATCC 29909]
 gi|238728528|gb|EEQ20047.1| Ribonuclease T [Yersinia intermedia ATCC 29909]
          Length = 226

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 22/195 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVEPFEGANLQPEALAFNG 90

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF        +Q    A  +AHNA FD  F+ A  +R  + 
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGLKDQGCNRAIIVAHNANFDHSFVMAAAERASLK 150

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ ++
Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCEL 208

Query: 175 M-----VGGSQINFG 184
           +     +GG  I  G
Sbjct: 209 VNRWKKLGGWPIPAG 223


>gi|323961899|gb|EGB57498.1| exonuclease [Escherichia coli H489]
          Length = 220

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNIALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|149277808|ref|ZP_01883948.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39]
 gi|149231496|gb|EDM36875.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39]
          Length = 456

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 7/155 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V DIETTG  +  + I EI ++ + +     + ++  + P G+        L GI+
Sbjct: 1   MLYAVVDIETTGGHASGNGITEI-SILVHNGHSIVQNYETLINP-GQYIPAHIEALTGIS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++  PSF+ + +E +   +++   ++AHN  FD  FI  +L     +     R + T
Sbjct: 59  NEMVETAPSFNQVAAEVYQLLHDK--IFVAHNVNFDFSFIRHQLGVCGYEL--SCRKLCT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160
           + ++R+  P  R+  L  LC    I++++R + G 
Sbjct: 115 VRMSRKIIPGHRSYSLGKLCAALNISLNNRHRAGG 149


>gi|152988793|ref|YP_001347003.1| ribonuclease T [Pseudomonas aeruginosa PA7]
 gi|166200015|sp|A6V1R8|RNT_PSEA7 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|150963951|gb|ABR85976.1| ribonuclease T [Pseudomonas aeruginosa PA7]
          Length = 224

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI A  + +D   +     T+   + P  G    P AL+  G
Sbjct: 32  VVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTG 91

Query: 65  ITDEF-----LKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQR--IN 114
           I  +      ++++ + + IF            + A  + HN+ FD+GF+NA + R  I 
Sbjct: 92  IKLDHPLRMAVQEEQALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIK 151

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+  G+   +R  H A  D+   ++++  +
Sbjct: 152 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGI 209

Query: 175 M 175
           +
Sbjct: 210 V 210


>gi|332969609|gb|EGK08627.1| DNA polymerase III, epsilon subunit [Kingella kingae ATCC 23330]
          Length = 463

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  ++ D+ETTG     DRI E   V  L + + +     +L    ++ SP   KL GI 
Sbjct: 26  MPVVILDLETTGGHFVQDRITE---VAFLRFWQGDVQRVSYLVNPQKEISPFVQKLTGID 82

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++  P+ + I  +       + A +IAHN++FD  F   E QR        +  + +
Sbjct: 83  NQMVRRAPALAKILPDLLPLL--RGALFIAHNSRFDYTFWRNECQRAGVA--FAALTLCS 138

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R+ +P   ++ L+S+ +R G+ +   S+H A+ D   L+ 
Sbjct: 139 VQLSRKLYPQYHKHSLDSIIERNGLIVP--SRHRAMADVDALAQ 180


>gi|228984721|ref|ZP_04144893.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228774919|gb|EEM23313.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 934

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|229121184|ref|ZP_04250421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           95/8201]
 gi|228662303|gb|EEL17906.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           95/8201]
          Length = 934

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 31/231 (13%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGIT--ISHRSKHGALLDSHL---------------- 166
           T+ +A+   P++ +  L  L K++ +     HR+   AL  + L                
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQHELEHDQPHRADSDALATAELFLQFLNEIEKLPLVTL 178

Query: 167 -----LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
                LSDV+   +     +N   K    +   EE +   NI+L KR+  L
Sbjct: 179 QSLYELSDVFQSDIADVLSVNILKKMMHGKKAAEEYEVYRNIALRKRNYSL 229


>gi|92114250|ref|YP_574178.1| ribonuclease T [Chromohalobacter salexigens DSM 3043]
 gi|122419726|sp|Q1QVM9|RNT_CHRSD RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|91797340|gb|ABE59479.1| RNAse T [Chromohalobacter salexigens DSM 3043]
          Length = 221

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 19/183 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L   ++ N     T    + P  G      AL   G
Sbjct: 20  VVVDLETGGFNAQRDALLEIAAVTLTMDAQGNLMPDDTHAFHVRPFEGANIEQAALDFTG 79

Query: 65  I-TDEFLKDKPSFSS------IFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR-- 112
           I  D  L+ + + S       IF              A  + HNA FD GF+NA ++R  
Sbjct: 80  IDLDSPLRQQVALSEHDALGEIFKPVRKAIKANQCTRAILVGHNAAFDQGFLNAAVERNG 139

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I ++P  P    DT ++    +   +  L   C+  GI   + S H A  D+   ++++ 
Sbjct: 140 IKRNPFHPFSCFDTATLGGLVY--GQTVLARACRAAGIEFDNASAHSARYDTERTAELFC 197

Query: 173 KMM 175
            M+
Sbjct: 198 AMV 200


>gi|218528419|ref|YP_002419235.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           chloromethanicum CM4]
 gi|218520722|gb|ACK81307.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           chloromethanicum CM4]
          Length = 297

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 10/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ET   + + D    +G +  ++  +  R     + P   + SP  +++HGI 
Sbjct: 1   MKVVAIDFETA--NERRDSACAVG-LAWIEGGRVARRESRLIRPPQLRFSPGNIRVHGIL 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P+F  + +EF    +      +AHNA FD+G + A L     +P+       T
Sbjct: 58  PADVRDAPTFPEVIAEF--LPDLSGGLMLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L IARR  P  + + L  +  R GI   H   H A  D+   +++ +  +
Sbjct: 115 LQIARRVFPDPAGHGLAKVAGRLGIRFEH---HDAGEDAFACAEIALAAL 161


>gi|300727971|ref|ZP_07061349.1| exonuclease [Prevotella bryantii B14]
 gi|299774813|gb|EFI71427.1| exonuclease [Prevotella bryantii B14]
          Length = 279

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 11/142 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           I+FD+ETTGLD  NDRII+I  ++++   +  R  ++    N  K  P  +  L GIT+E
Sbjct: 10  IIFDLETTGLDMVNDRIIQISYIKVMPNGEEKRGDELV---NPEKPIPAFVSDLTGITNE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDT 126
            +K+ P+F  I ++  D F  +  ++   N+ +FD+  +  E  R   D      R+ID 
Sbjct: 67  QVKNAPTFKEIGTKLADIF--KGCDFAGFNSNRFDIPLLCEEFLRAGIDFDFSKCRLIDA 124

Query: 127 LSIARRKHPSSRNDLNSLCKRY 148
            +I    H   + +L +  K Y
Sbjct: 125 QTIF---HKMEKRNLAAAYKFY 143


>gi|206890301|ref|YP_002247886.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742239|gb|ACI21296.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 230

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 10/173 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D E TGL+   D II IGA+++   + K    F   + P+ +K   E++ +H IT  
Sbjct: 25  VVVDTELTGLNEFRDNIIAIGAIKMKGRTIKIGDIFYRTVSPSTKKFRKESIMIHEITPS 84

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL- 127
            L+  P    I  EF  F   +N   + H    D+ F+  E++   ++  +P   IDTL 
Sbjct: 85  ELEKCPQIEPILREFIKF--SKNCLVVGHCVDIDLTFLKKEIRNNLREIFEPFS-IDTLL 141

Query: 128 ----SIARRKHPSSRNDLNSLCK-RYGITISHRSKHGALLDSHLLSDVYIKMM 175
                I +   PS  ++ NSL      + I  +  H AL D+ + + ++ +++
Sbjct: 142 IYKWLIKKEILPSDFSNKNSLEDIALSLDIEPKELHDALSDAFITAQIFQRLL 194


>gi|146281584|ref|YP_001171737.1| ribonuclease T [Pseudomonas stutzeri A1501]
 gi|145569789|gb|ABP78895.1| ribonuclease T [Pseudomonas stutzeri A1501]
          Length = 203

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKN-SPEALKL 62
           +V D+E  G +   D ++EI AV +      L Y +    ++V   P    N  P AL+ 
Sbjct: 11  VVIDVECGGFNCATDALLEIAAVTIGMDEQGLLYPQDTLFYRVE--PFAGANIEPAALEF 68

Query: 63  HGI-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR-- 112
            GI  D  L+    ++ + + IF              A  + HN+ FD+GF+NA + R  
Sbjct: 69  TGIKLDHPLRMAVPEQQALTDIFRSVRKAVKSAGCKRAILVGHNSSFDLGFLNAAIARCE 128

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++ 
Sbjct: 129 IKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFC 186

Query: 173 KMM 175
            ++
Sbjct: 187 GIV 189


>gi|117620471|ref|YP_857153.1| ribonuclease T [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561878|gb|ABK38826.1| ribonuclease T [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 240

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A  L +D   +   ++ F   + P  G      AL+  G
Sbjct: 39  VVIDVETAGFNARTDALLEIAAYTLKMDEQGWLVPDQIFHFHVEPFEGANLEKAALEFTG 98

Query: 65  ITDEF------LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--I 113
           I D F      + +K + + IF        EQ+   A  +AHNA FD GF+ A  +R  +
Sbjct: 99  I-DPFNPLRGAVSEKEALTEIFKGIRKGMKEQDCGRAIIVAHNATFDHGFVMAAAERAGL 157

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C+   I   ++  H AL D+   ++++  
Sbjct: 158 KRNPFHPFATFDTAALSGLA--LGQTVLAKACQSARIPFDNKEAHSALYDTERTTELFCH 215

Query: 174 MM 175
           ++
Sbjct: 216 IV 217


>gi|70726458|ref|YP_253372.1| ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435]
 gi|123660231|sp|Q4L6F9|DING_STAHJ RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|68447182|dbj|BAE04766.1| probable ATP-dependent DNA helicase [Staphylococcus haemolyticus
           JCSC1435]
          Length = 900

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG     D II+IG +  +  +K + T+   +        P    L  I D  L
Sbjct: 8   VVDLETTGNQLDYDEIIQIG-ITFVSNNKISGTYHS-MIRTDLDIPPFIQALTSIEDTML 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  I  E +    ++   ++AHN  FD+ FI    Q  N D   P +++DTL + 
Sbjct: 66  EQAPYFHEIAQEIYKQLKDR--VFVAHNVDFDLNFIKKAFQNCNID-FKPKKVLDTLELF 122

Query: 131 RRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           +  +P+ ++  L+ L + + I +  +HR+   A   + L+
Sbjct: 123 KIAYPTDKSYQLSELAEAHDIPLDNAHRADEDATTTALLM 162


>gi|228982633|ref|ZP_04142892.1| DNA polymerase III PolC [Bacillus thuringiensis Bt407]
 gi|228776816|gb|EEM25124.1| DNA polymerase III PolC [Bacillus thuringiensis Bt407]
          Length = 286

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 13/159 (8%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITD 67
           +V DIETT     K  RI EIGAV+ +D    ++  Q+    N     P  + KL GIT+
Sbjct: 20  VVLDIETTAFSPVKGGRITEIGAVKYIDGKVVDKYSQLI---NPEMKIPANITKLTGITN 76

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDPLDPSRIIDT 126
           + ++ KP +  +   F  F +      +AHNAKFD   F+    +++   P   + ++D+
Sbjct: 77  DMVQGKPVYGQVLPVFQQFID--GFLVVAHNAKFDWNRFLLFYFEKVGIHP--KNEVLDS 132

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           +++ +   P+  +  L+  C  +G    ++++H A  D+
Sbjct: 133 VAVFQHFCPNKGKYKLDDFCTTFGYL--NKNRHRAYEDA 169


>gi|49477263|ref|YP_035758.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196033564|ref|ZP_03100976.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus W]
 gi|218902753|ref|YP_002450587.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH820]
 gi|49328819|gb|AAT59465.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|195993998|gb|EDX57954.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus W]
 gi|218538657|gb|ACK91055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH820]
          Length = 934

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 31/231 (13%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGIT--ISHRSKHGALLDSHL---------------- 166
           T+ +A+   P++ +  L  L K++ +     HR+   AL  + L                
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQHELEHDQPHRADSDALATAELFLQFLNEIEKLPLVTL 178

Query: 167 -----LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
                LSDV+   +     +N   K    +   EE +   NI+L KR+  L
Sbjct: 179 QSLYELSDVFQSDIADVLSVNILKKMMHGKKAAEEYEVYRNIALRKRNYSL 229


>gi|251777997|ref|ZP_04820917.1| putative exonuclease [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082312|gb|EES48202.1| putative exonuclease [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 974

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 16/158 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK--LHGITD 67
           I  DIETTGLD  N  IIEIGAV++ + S T  T++V + P G  N P ++     G+ +
Sbjct: 12  IYLDIETTGLDENNCEIIEIGAVKIKNLSVT--TYEVLIRPKG--NVPVSIYKLCQGLKE 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L +      I  E   F   ++   I HN  F+  F++  +  I     D   +   L
Sbjct: 68  EELMNSRHLEDIKKELLVFL--EDLPLICHNGGFERKFLSYHIPEIKNQIFDSMELSAIL 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK-HGALLDS 164
              R+++     +L+SL K   ITI  + + H  L DS
Sbjct: 126 EPWRKEY-----NLDSLIK--SITILDKDEFHRGLEDS 156


>gi|228945241|ref|ZP_04107597.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228814476|gb|EEM60741.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 934

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 31/231 (13%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGIT--ISHRSKHGALLDSHL---------------- 166
           T+ +A+   P++ +  L  L K++ +     HR+   AL  + L                
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQHELEHDQPHRADSDALATAELFLQFLNEIEKLPLVTL 178

Query: 167 -----LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
                LSDV+   +     +N   K    +   EE +   NI+L KR+  L
Sbjct: 179 QSLYELSDVFQSDIADVLSVNILKKMMHGKKAAEEYEVYRNIALRKRNYSL 229


>gi|42780745|ref|NP_977992.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus ATCC 10987]
 gi|42736665|gb|AAS40600.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           cereus ATCC 10987]
          Length = 934

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|327400242|ref|YP_004341081.1| DNA polymerase III subunit epsilon [Archaeoglobus veneficus SNP6]
 gi|327315750|gb|AEA46366.1| DNA polymerase III, epsilon subunit [Archaeoglobus veneficus SNP6]
          Length = 196

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 15/195 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E+TGL+ K D I+ I  + ++  S+   +   F     +K   E++K HGI  
Sbjct: 8   RYSVIDVESTGLNPKKDEIVAIAVIPMVG-SRIILSDYFFSLVRPKKLKGESIKYHGIDI 66

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ----RINKDPLDPSRI 123
           + +   P F SI S       +     I    +FD   + +       R+  D +D S++
Sbjct: 67  KAVSKAPEFQSIASRLKHMLEDS---IIVSYTEFDAKILKSHFSRLKIRLELDCIDISQV 123

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                IAR++  +  +D++ L K+Y +   +R  H AL D++  + ++ + +V  ++  +
Sbjct: 124 --EHWIARKEGRAENHDMDGLIKKYSLEEIYR--HSALADAYYTACIFQRQLVKLAE--Y 177

Query: 184 GFKTNE-DRFFKEEK 197
           G    E  R  K EK
Sbjct: 178 GVTLQELKRIGKREK 192


>gi|301053179|ref|YP_003791390.1| ATP-dependent DNA helicase [Bacillus anthracis CI]
 gi|300375348|gb|ADK04252.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 934

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|270290674|ref|ZP_06196898.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4]
 gi|270280734|gb|EFA26568.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4]
          Length = 178

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 7/126 (5%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI +  ++D P+F  ++     FF       +AHNA FD   +   L+R   + L 
Sbjct: 50  VQVHGIHEADVQDAPTFPELWPILQPFFTPDQLV-VAHNANFDNSVLKKTLERYELNRL- 107

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMV 176
           P + +DTL  +R   P+  N  LN+LC   GI + H   H AL DS   +++  Y K   
Sbjct: 108 PYQTLDTLRTSRSFFPNYPNHKLNTLCDNLGIELEHH--HNALDDSLACANILLYEKKQF 165

Query: 177 GGSQIN 182
           G   I+
Sbjct: 166 GADAIS 171


>gi|298528189|ref|ZP_07015593.1| DNA polymerase III, epsilon subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511841|gb|EFI35743.1| DNA polymerase III, epsilon subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 249

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 18/189 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLH 63
           N+   +V D E TGL+ K D I+ IGA+ + +      ++F    CP  R    +++ +H
Sbjct: 48  NEYDFVVLDTELTGLNVKKDEIVTIGALRISEMRIDMEQSFYFCACPT-RDVPKQSIVIH 106

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT    +  P          DF    N+  + HN   D+  IN EL++     L  +  
Sbjct: 107 GITPSEAQKAPPLKEALQGLLDFCG--NSIIVGHNINLDISVINRELKKEFGGELH-NPC 163

Query: 124 IDTLSIARRK-----------HPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDV 170
           IDT+ +AR+            +     +L  L + +G+ +   H +   AL  ++L   +
Sbjct: 164 IDTMRLARQYREGQWTGAYECYEEYSYNLRKLSREFGLPLFTEHNAFTDALQTAYLFIYL 223

Query: 171 YIKMMVGGS 179
             KM V  +
Sbjct: 224 VHKMQVNAA 232


>gi|313623167|gb|EFR93428.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           innocua FSL J1-023]
          Length = 928

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 11/167 (6%)

Query: 6   KMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LH 63
           K R IV D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  ++ L 
Sbjct: 3   KKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYSTFLNPE--KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+ + +K+ P F  +          ++  ++AHN  FD  F+  E+ R     L   + 
Sbjct: 60  GISPKDVKNAPLFEDVAPIIASLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKK 116

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           +DT+ +AR  +P      L  L   +G  + H   H A  D+ + +D
Sbjct: 117 LDTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 161


>gi|269986750|gb|EEZ93030.1| Exonuclease RNase T and DNA polymerase III [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 199

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 17/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDE 68
           IV DIET+G    N  I+ IGAV   D+S   R F Q       ++ + EAL ++G   E
Sbjct: 2   IVVDIETSGTSPYNHSILSIGAV---DFSNPERQFYQECQIEKDKEYTEEALNVNGFKKE 58

Query: 69  FLKD--KPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRIID 125
            L D  K +  S+ +EF  +      + I  HN  FD  F+N   ++ N +     R+ID
Sbjct: 59  ELTDPKKKTLESVLNEFIVWIQPVKDKTIGGHNVNFDANFLNYSFKKYNINFSFGHRVID 118

Query: 126 TLS------IARRKHPSSRN---DLNS-LCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T S      ++R   P ++N   D+NS     Y         H AL  + + ++   +++
Sbjct: 119 THSLVYASLLSRHIDPPTKNEKTDINSDYVFNYAGLPPEPKPHNALNGAKMEAEALSRLI 178

Query: 176 VG 177
           +G
Sbjct: 179 LG 180


>gi|253577523|ref|ZP_04854836.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843063|gb|EES71098.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 951

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 8/170 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  V D ETTG  S +D II++G   +      ++ ++ F+ P G    P    L GIT
Sbjct: 1   MKYAVLDFETTGNQSSDD-IIQVGLAIIEPDRSISQVYRSFVKP-GVPIPPFITGLTGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE +KD P    +  E     N+     + HN  FD  ++ + L +    P    RI+DT
Sbjct: 59  DEDVKDAPELDEVMMEMVPLLND--VVLVGHNVAFDFNYLQSALDKTGYLPFT-GRILDT 115

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +   +   PS +   L  +   +   + H   H A  D+   + +++K +
Sbjct: 116 MDFLKILFPSLTSYQLGMVAAEF--EVEHERPHQADSDALATALIFLKCL 163


>gi|52143806|ref|YP_083022.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus E33L]
 gi|51977275|gb|AAU18825.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
          Length = 934

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|228932930|ref|ZP_04095795.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826733|gb|EEM72502.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 934

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFQDVAPMVGELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|16801079|ref|NP_471347.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria innocua Clip11262]
 gi|16414514|emb|CAC97243.1| dinG [Listeria innocua Clip11262]
          Length = 928

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 11/167 (6%)

Query: 6   KMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LH 63
           K R IV D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  ++ L 
Sbjct: 3   KKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYSTFLNPE--KPIPAFIQELT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+ + +K+ P F  +          ++  ++AHN  FD  F+  E+ R     L   + 
Sbjct: 60  GISPKDVKNAPLFEDVAPIIASLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKK 116

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           +DT+ +AR  +P      L  L   +G  + H   H A  D+ + +D
Sbjct: 117 LDTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 161


>gi|215487057|ref|YP_002329488.1| exodeoxyribonuclease X [Escherichia coli O127:H6 str. E2348/69]
 gi|312967045|ref|ZP_07781263.1| exonuclease family protein [Escherichia coli 2362-75]
 gi|331647439|ref|ZP_08348531.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M605]
 gi|331657890|ref|ZP_08358852.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA206]
 gi|215265129|emb|CAS09517.1| DNA exonuclease X [Escherichia coli O127:H6 str. E2348/69]
 gi|312288509|gb|EFR16411.1| exonuclease family protein [Escherichia coli 2362-75]
 gi|315299931|gb|EFU59169.1| exonuclease [Escherichia coli MS 16-3]
 gi|330911653|gb|EGH40163.1| exodeoxyribonuclease X [Escherichia coli AA86]
 gi|331043163|gb|EGI15301.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M605]
 gi|331056138|gb|EGI28147.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA206]
          Length = 220

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKIRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|313124719|ref|YP_004034978.1| DNA polymerase iii polc-type [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312281282|gb|ADQ62001.1| DNA polymerase III PolC-type [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 298

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 22/178 (12%)

Query: 5   NKMRKIV-----FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N ++KIV      D ETTGL +  D +IEIG + + +   T+R ++  + P   +N  + 
Sbjct: 3   NYVKKIVSDYCVLDTETTGLSAYYDEVIEIGILRVRNGEITDR-YEQLIKP---ENEIDG 58

Query: 60  L--KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
               L GIT+E + DKP+   + S+   F        + HN  FDV F+ A      +D 
Sbjct: 59  FITSLTGITNEMVADKPAIEDVKSDVLAFLGSDII--VGHNTSFDVRFLAAGFH---EDI 113

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +  +DT+  AR+ +P  + + L+ L +   +T    ++H AL D     ++Y  M
Sbjct: 114 --ANEYMDTMQFARKLYPDLTHHRLSDLSEYLYLT---NNEHRALADCVTTEELYEAM 166


>gi|300117431|ref|ZP_07055221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus SJ1]
 gi|298725266|gb|EFI65918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus SJ1]
          Length = 934

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|260437725|ref|ZP_05791541.1| DNA polymerase III PolC-type [Butyrivibrio crossotus DSM 2876]
 gi|292809747|gb|EFF68952.1| DNA polymerase III PolC-type [Butyrivibrio crossotus DSM 2876]
          Length = 234

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 12/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +  D+ETTGL   +++IIE+GAV   D  K    +   + P    + PE + ++ GI D+
Sbjct: 6   VAIDLETTGLSPYDNKIIELGAVRYRD-GKPVDQYNTLINPG--VHIPERITEITGIDDD 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P          +F    N   + HN  FD  FI   L   + +    +  IDTL 
Sbjct: 63  MVSKAPYIDDELDRIMEFIG--NDVILGHNVIFDYTFIAGALAGHSIEY--SAEAIDTLK 118

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            A++  P++ + +L  LC+ + I   H   H A  D+   ++VY ++
Sbjct: 119 FAKKVLPANESKNLEHLCEMFDIVTIH---HRAYEDAMSAANVYFRL 162


>gi|145636543|ref|ZP_01792211.1| ribonuclease T [Haemophilus influenzae PittHH]
 gi|145270368|gb|EDK10303.1| ribonuclease T [Haemophilus influenzae PittHH]
          Length = 229

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 20/190 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L +D   Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73

Query: 56  SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +            Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMIRRGQKDADCQRSIIVAHNAAFDQSFVM 133

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R  + ++P  P  + DT S+A       +  L   C    I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMM 175
             + ++  M+
Sbjct: 192 RTAKLFCYMV 201


>gi|313682951|ref|YP_004060689.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155811|gb|ADR34489.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 204

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 9/170 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGL++K D ++ IGAV++  D   T+ +F++FL P+ R+ S E++K+H I   
Sbjct: 32  VVFDTETTGLNTKKDEVLSIGAVKIKGDKILTSESFELFLKPS-REISVESIKIHHIRPC 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++         +F +F    N   I +  +FD+  +N  ++      L P+R I+   
Sbjct: 91  DLENAIEPVEGAKKFLEFVG--NRPLIGYYLEFDMAMMNRLIKPWIGVNL-PNRQIEVSG 147

Query: 129 IARRKH----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +   K     P    DL        + I    +H AL D+ + + VYIK+
Sbjct: 148 LYFDKKIELIPQGNIDLRFDTILRDLNIPRMGQHNALNDAIMTAMVYIKL 197


>gi|260773225|ref|ZP_05882141.1| ribonuclease T [Vibrio metschnikovii CIP 69.14]
 gi|260612364|gb|EEX37567.1| ribonuclease T [Vibrio metschnikovii CIP 69.14]
          Length = 218

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++EI A+ L    + +     T    + P  G      AL+ +G
Sbjct: 20  VVIDVETAGFNPQTDALLEICAITLCMDEQGDLHPASTLHFHIEPFEGANIEKAALEFNG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFW-DFFNEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   +      E +     EQ A        +AHNA FD GF+ A  +R  +
Sbjct: 80  IHDPFSALRGAVTEEYALKEIYKQVRKEQKAADCSRAIIVAHNASFDHGFVMAANERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++   +   +  L   CK  G+   +R  H AL D+   + ++  
Sbjct: 140 KRVPFHPFATFDTAALSGLAY--GQTVLAKACKAAGMEFDNREAHSALYDTQQTAALFCG 197

Query: 174 MM 175
           ++
Sbjct: 198 II 199


>gi|238925353|ref|YP_002938870.1| DNA polymerase III, epsilon subunit [Eubacterium rectale ATCC
           33656]
 gi|238877029|gb|ACR76736.1| DNA polymerase III, epsilon subunit [Eubacterium rectale ATCC
           33656]
          Length = 245

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 21/173 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHG 64
           V D+E TGL +KND+IIEIGA      E++D      T    + P  +++ P+ ++ L G
Sbjct: 12  VIDLEMTGLSAKNDKIIEIGAARVRGGEIVD------TISTLVNP--KQHIPQRVQELTG 63

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD  +++            +F  +     +  N  FD  F+      +N          
Sbjct: 64  ITDSDVENAADMDEAVDNLLNFIGDDII--LGQNVTFDYSFLKQ--WAVNHKRTLSLNAY 119

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           DTL IAR+  P+ ++  L  LC+ +G  +S ++ H AL D+     ++ K++ 
Sbjct: 120 DTLKIARKCLPAEQSKKLEDLCEYFG--VSRKNAHRALDDAIETKQIFEKLLA 170


>gi|289209028|ref|YP_003461094.1| exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
           K90mix]
 gi|288944659|gb|ADC72358.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
           K90mix]
          Length = 246

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 24/181 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           R +  D+ETTGLD ++D I+ IG V +    +D S  ++      CP   +++     +H
Sbjct: 55  RFLAVDLETTGLDPEHDAILSIGWVAMDGVRIDLSTADQRLVRADCPVPEQSA----VIH 110

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPS 121
            ITD       +  S     ++    Q    +AH+A  ++GF+     R+   + PL   
Sbjct: 111 RITDREAAGGTTVDSALDALFEVL--QGRVLVAHHAALELGFLEEACYRLYGVRPPLP-- 166

Query: 122 RIIDTLSIARRKH-------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++DTL +A R+        P+    L++L  RY   +     H AL D+    ++++ +
Sbjct: 167 -VVDTLRLAERQLRRAGRPIPADGMRLHTLRGRY--NLPQYRAHDALFDALAAGELFVAL 223

Query: 175 M 175
           +
Sbjct: 224 V 224


>gi|329946892|ref|ZP_08294304.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328526703|gb|EGF53716.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 552

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 20/171 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHG 64
           +V D+ETTG       + EIGAV+        R  QV      L   G     +   L G
Sbjct: 23  VVVDLETTGGAPGAQALTEIGAVK-------ARGGQVLTDFFTLVNPGVAIPAQITMLTG 75

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFN--EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           IT+  +   P   +    F D+ +    +   +AHNA+FDVG +      +  +  +P R
Sbjct: 76  ITNAMVAGAPGVRTCVEAFLDWADLLAGDVVLVAHNARFDVGHLRGAAAALGLEWPEP-R 134

Query: 123 IIDTLSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++DTL++AR+    S    + L +L    G     R  H AL D+    DV
Sbjct: 135 VLDTLALARKAWTRSEVPNHKLGTLAAFVGSQT--RPTHRALDDACATVDV 183


>gi|326332133|ref|ZP_08198417.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium
           Broad-1]
 gi|325950104|gb|EGD42160.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium
           Broad-1]
          Length = 228

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 3/112 (2%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R N+    V D+ETTGLD   DR+I++   ++         ++  + P G    P  +++
Sbjct: 23  RGNRRGFAVLDVETTGLDPYRDRVIQVAIRQIAADGTAESEWETLVNP-GAGVDPGPVEV 81

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           HG+T   L   P F  + +   +    +   ++AHNA FD  F+  E  R  
Sbjct: 82  HGLTTADLAGAPPFRDVAATIAERLAGRV--FVAHNAAFDWAFVAVESDRAG 131


>gi|324325658|gb|ADY20918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 934

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|87120665|ref|ZP_01076558.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121]
 gi|86163893|gb|EAQ65165.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121]
          Length = 203

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           ++ D ETTGL   + DR IEIGAV+L +  +    FQ  + P G   +       GI++ 
Sbjct: 7   VILDFETTGLSPDQGDRAIEIGAVKL-EAGEVVAEFQALMNP-GFSVTSFIEGYTGISNA 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L    S   +   F +F  + N   IAHNA FD  F++AE  R N   +       +L 
Sbjct: 65  MLAQADSCREVMESFAEFIADNN--LIAHNASFDRRFLDAEFSRFNH--VYQGDFSCSLL 120

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++RR    +  + L +L     ++      H AL D+ + + +++ M+
Sbjct: 121 LSRRIFQDAPSHSLGALVNYINLS-GTGDFHRALYDAQMTAKLWMAML 167


>gi|327479762|gb|AEA83072.1| ribonuclease T [Pseudomonas stutzeri DSM 4166]
          Length = 224

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKN-SPEALKL 62
           +V D+E  G +   D ++EI AV +      L Y +    ++V   P    N  P AL+ 
Sbjct: 32  VVIDVECGGFNCATDALLEIAAVTVGMDEQGLLYPQDTLFYRVE--PFAGANIEPAALEF 89

Query: 63  HGI-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR-- 112
            GI  D  L+    ++ + + IF              A  + HN+ FD+GF+NA + R  
Sbjct: 90  TGIKLDHPLRMAVPEQQALTDIFRSVRKAVKSAGCKRAILVGHNSSFDLGFLNAAIARCE 149

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++ 
Sbjct: 150 IKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFC 207

Query: 173 KMM 175
            ++
Sbjct: 208 GIV 210


>gi|313889930|ref|ZP_07823570.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121696|gb|EFR44795.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 820

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 10/165 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+E T   S + RII+IG V +++  K    FQ  + P+  K S     L GITD+ L
Sbjct: 10  VIDLEATNAGS-DARIIQIGIV-IVENKKIIDRFQTDINPHS-KLSEHIKSLTGITDQQL 66

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P FS + S+ ++    ++  ++AHN KFD   +   L     + L P   +DT+ +A
Sbjct: 67  ASAPEFSQVASQIFELI--KDCVFVAHNVKFDANLLAEALFFEGFELLTPR--MDTVELA 122

Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +   P+  + +L  L K   + ++H   H A+ D+   + ++IK+
Sbjct: 123 QVFFPNLEKYNLGHLAKNMDLHLAH--AHTAIDDALATAKLFIKI 165


>gi|257869632|ref|ZP_05649285.1| DNA polymerase III [Enterococcus gallinarum EG2]
 gi|257803796|gb|EEV32618.1| DNA polymerase III [Enterococcus gallinarum EG2]
          Length = 920

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 10/158 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG D   DRII+ G V + D    NR F   + P+ R+ S +   L  IT++ +
Sbjct: 7   VVDLETTGTDPAIDRIIQFGCVLIQDGQVINR-FATDINPD-RRISKQIQNLTHITNQQV 64

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
           K  P F  +    ++   +    ++AHN  FD  F++ EL R     L+ P   IDT+ +
Sbjct: 65  KRAPYFEDVAHTIYNLLTQ--TVFVAHNIYFDYHFLSQELIRCGMPSLEIPG--IDTVEL 120

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A+   P+ S   L  L +  G    H + H A  D+ +
Sbjct: 121 AQVFLPTESSFRLGDLAESIGFV--HENPHQADSDAEV 156


>gi|118477094|ref|YP_894245.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus thuringiensis str. Al Hakam]
 gi|196046614|ref|ZP_03113838.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB108]
 gi|225863505|ref|YP_002748883.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB102]
 gi|229183836|ref|ZP_04311053.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC
           6E1]
 gi|118416319|gb|ABK84738.1| ATP-dependent DNA helicase [Bacillus thuringiensis str. Al Hakam]
 gi|196022547|gb|EDX61230.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB108]
 gi|225789838|gb|ACO30055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB102]
 gi|228599685|gb|EEK57288.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC
           6E1]
          Length = 934

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|152975065|ref|YP_001374582.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023817|gb|ABS21587.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           cytotoxicus NVH 391-98]
          Length = 929

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV +++  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAV-VVEGGEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + ID
Sbjct: 62  DENLVKQAPLFQDVAPMIVELL--QGASFVAHNVHFDWNFLKEELKQAGYADIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|30261638|ref|NP_844015.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Ames]
 gi|47526838|ref|YP_018187.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184469|ref|YP_027721.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Sterne]
 gi|165869397|ref|ZP_02214056.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0488]
 gi|167639095|ref|ZP_02397368.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0193]
 gi|170706543|ref|ZP_02897003.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0389]
 gi|177650486|ref|ZP_02933453.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0174]
 gi|190568647|ref|ZP_03021552.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis Tsiankovskii-I]
 gi|227815611|ref|YP_002815620.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. CDC 684]
 gi|229602233|ref|YP_002866045.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0248]
 gi|254734478|ref|ZP_05192190.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Western North America
           USA6153]
 gi|254755128|ref|ZP_05207162.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Vollum]
 gi|254759665|ref|ZP_05211689.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Australia 94]
 gi|30255866|gb|AAP25501.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. Ames]
 gi|47501986|gb|AAT30662.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49178396|gb|AAT53772.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           anthracis str. Sterne]
 gi|164714837|gb|EDR20355.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0488]
 gi|167512885|gb|EDR88258.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0193]
 gi|170128641|gb|EDS97508.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0389]
 gi|172083630|gb|EDT68690.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0174]
 gi|190560247|gb|EDV14227.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis Tsiankovskii-I]
 gi|227006832|gb|ACP16575.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. CDC 684]
 gi|229266641|gb|ACQ48278.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0248]
          Length = 934

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|229195843|ref|ZP_04322602.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1293]
 gi|228587616|gb|EEK45675.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1293]
          Length = 934

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|295096042|emb|CBK85132.1| RNAse T [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 219

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 22/195 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLVPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF        E +   A  +AHNA FD  F  A  +R  + 
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKMVRKGMKENDCSRAIMVAHNATFDHSFTMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   GI       H AL D+   ++++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACITAGIAFDGTQAHSALYDTERTAELFCEI 197

Query: 175 M-----VGGSQINFG 184
           +     +GG  +  G
Sbjct: 198 VNRWKRLGGWPLPMG 212


>gi|229090605|ref|ZP_04221839.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-42]
 gi|228692748|gb|EEL46473.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-42]
          Length = 934

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|304386198|ref|ZP_07368531.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
 gi|304327555|gb|EFL94782.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 181

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 7/126 (5%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI +  ++D P+F  ++     FF       +AHNA FD   +   L+R   + L 
Sbjct: 53  VQVHGIHEADVQDAPTFPELWPILQPFFTPDQLV-VAHNANFDNSVLKKTLERYELNRL- 110

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMV 176
           P + +DTL  +R   P+  N  LN+LC   GI + H   H AL DS   +++  Y K   
Sbjct: 111 PYQTLDTLRTSRSFFPNYPNHKLNTLCDNLGIELEHH--HNALDDSLACANILLYEKKQF 168

Query: 177 GGSQIN 182
           G   I+
Sbjct: 169 GADAIS 174


>gi|206974778|ref|ZP_03235693.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus H3081.97]
 gi|217959123|ref|YP_002337671.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus AH187]
 gi|222095271|ref|YP_002529331.1| bifunctional ATP-dependent DNA helicase/DNA polymerase iii subunit
           epsilon [Bacillus cereus Q1]
 gi|206746797|gb|EDZ58189.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus H3081.97]
 gi|217066733|gb|ACJ80983.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH187]
 gi|221239329|gb|ACM12039.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
          Length = 934

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|91223850|ref|ZP_01259114.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|91191342|gb|EAS77607.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
          Length = 248

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 19/190 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+S+ D I+ IG V   +D  + N +    + PN R+ + E++ +HGITD 
Sbjct: 59  VSVDFETTGLNSEEDVILTIGLVPFTIDRVQCNGSAHWVVNPN-RELNHESVIIHGITDS 117

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127
            +K+ P  S I  E  D  + +    + H    +  F  NA L  I +    P  ++DTL
Sbjct: 118 EVKNAPQLSQILGEILDALSGKVV--LVHYKNIERQFFNNALLNSIGEGIQFP--VVDTL 173

Query: 128 ----SIARRKHPSSRNDLNSL-CKRYG-ITISH-RSKHG--ALLDSHLLSDVYIKMMVGG 178
               +I RR+    R  +N L  K+ G + + H R ++G  A    H L+D      +  
Sbjct: 174 DIEYAIQRRE---CRGFINKLKGKKPGSVRLGHARERYGLPAYQPHHALTDALATAELFQ 230

Query: 179 SQINFGFKTN 188
           +Q+ + F  N
Sbjct: 231 AQLQYHFNRN 240


>gi|229844583|ref|ZP_04464723.1| ribonuclease T [Haemophilus influenzae 6P18H1]
 gi|229812832|gb|EEP48521.1| ribonuclease T [Haemophilus influenzae 6P18H1]
 gi|301169030|emb|CBW28627.1| ribonuclease T (RNase T) [Haemophilus influenzae 10810]
          Length = 229

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 20/190 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L +D   Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73

Query: 56  SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +            Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVM 133

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R  + ++P  P  + DT S+A       +  L   C    I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMM 175
             + ++  M+
Sbjct: 192 RTAKLFCYMV 201


>gi|104773929|ref|YP_618909.1| hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423010|emb|CAI97696.1| Hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 290

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 13/168 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIETTGL+++ D+I+ IGAV      K + T    L         + ++L GIT E 
Sbjct: 127 VAVDIETTGLNTETDQILSIGAV------KHDGTEFYRLIKQDIDVPKQIVELTGITSEM 180

Query: 70  L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L K+         E  DF    N   + +N +FD  F+N + ++     L  + I D L 
Sbjct: 181 LSKEGVPLQDALEELTDFVG--NVPIVGYNFRFDSAFLNRDYRKCGMQELK-NEIKDLLP 237

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +RK     N  L ++   YG  I ++  H A+ D+    ++ +K++
Sbjct: 238 VVKRKEKFLDNYKLQTVLSNYG--IENKVPHNAVSDARATKELAMKLI 283


>gi|260912251|ref|ZP_05918803.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260633685|gb|EEX51823.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 284

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 9/141 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGLD  NDRII+I  +++    K  R   +F+ P G+    E  +L GIT + 
Sbjct: 10  IVFDLETTGLDLVNDRIIQISYIKVYPDGKEERE-NLFVYP-GKPIPDEVSELTGITTDL 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD-PLDPSRIIDTL 127
           ++D P+F  +     + F  +  ++   N+  FD+  +  E  R   D      R+ID  
Sbjct: 68  VEDAPTFEELAPRLNEVF--KGCDFAGFNSNHFDIPMLAEEFLRAEIDFDFSSVRLIDAQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
           +I    H   + +L +  K Y
Sbjct: 126 TIF---HKMEKRNLAAAYKFY 143


>gi|289207535|ref|YP_003459601.1| ribonuclease T [Thioalkalivibrio sp. K90mix]
 gi|288943166|gb|ADC70865.1| ribonuclease T [Thioalkalivibrio sp. K90mix]
          Length = 228

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 87/181 (48%), Gaps = 19/181 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D +   ++++ AV L     D+   +RT  + + P  G +  P++L+++G
Sbjct: 24  VVVDVETGGFDCRRHALLQVAAVFLRRDENDHLVRDRTVSLHVRPYEGSEMDPKSLEVNG 83

Query: 65  ITD------EFLKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113
           I         + +D+ +   +FSE        + + A  + HNA FD+GF++   +R  I
Sbjct: 84  IDPYHPLRAAYPEDQ-AMGRLFSEVRREVKINHCKRAILVGHNAHFDLGFVHTAAERCGI 142

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P   +DT+S+A       +  L       G+     + H A  D+   +D++ +
Sbjct: 143 KRNPFHPFSSLDTVSLAALAF--GQTVLARAADAAGLGWDAEAAHSAAFDAEKTADIFCQ 200

Query: 174 M 174
           +
Sbjct: 201 I 201


>gi|90109308|pdb|2F96|A Chain A, 2.1 A Crystal Structure Of Pseudomonas Aeruginosa Rnase T
           (Ribonuclease T)
 gi|90109309|pdb|2F96|B Chain B, 2.1 A Crystal Structure Of Pseudomonas Aeruginosa Rnase T
           (Ribonuclease T)
          Length = 224

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI A  +    K       T+   + P  G    P AL+  G
Sbjct: 32  VVVDVETGGFNSATDALLEIAATTVGXDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTG 91

Query: 65  ITDEF-----LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  +      ++++ + + IF              A  + HN+ FD+GF+NA + R  I 
Sbjct: 92  IKLDHPLRXAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIK 151

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+  G    +R  H A  D+   ++++  +
Sbjct: 152 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGXEFDNREAHSARYDTEKTAELFCGI 209

Query: 175 M 175
           +
Sbjct: 210 V 210


>gi|294789265|ref|ZP_06754503.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Simonsiella muelleri ATCC 29453]
 gi|294482690|gb|EFG30379.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Simonsiella muelleri ATCC 29453]
          Length = 450

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 85/166 (51%), Gaps = 11/166 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHG 64
           ++  ++ D+E TG    +DRI EI  +   D     R  Q+    N +K   E + +L G
Sbjct: 16  RLPVVILDLEATGGHFMHDRITEIAFLR-FDGQNVERFTQLV---NPQKEISEFVTQLTG 71

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I++E + + P+F+ +          + +  +AHN++FD   +  E +R       P+  +
Sbjct: 72  ISNEMVANAPTFADVIPHILPML--RGSLLVAHNSRFDYTLLRNEFRRAGVPFATPT--L 127

Query: 125 DTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            T+ ++R  +P+  +++L+++  R+G+T S   +H A  D  +L+D
Sbjct: 128 CTVKLSRTLYPNEHKHNLDAVANRFGLT-SDGKRHRAWADVAILAD 172


>gi|253989411|ref|YP_003040767.1| ribonuclease T [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253780861|emb|CAQ84023.1| ribonuclease T [Photorhabdus asymbiotica]
          Length = 217

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + +    + P  G    P AL+  G
Sbjct: 20  VVIDVETGGFNAKTDALLEIAAITLKMDDEGWITPDESLHFHIEPFEGANLEPAALEFTG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFI--NAELQRIN 114
           I         + +  +  +IF          +   A  +AHNA FD GF+   AE  R+ 
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKNSHCNRAIIVAHNANFDHGFVMAAAERARLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++        +  L   C   G++  +   H AL D++  ++++ +M
Sbjct: 140 RNPFHPFATFDTAALGGLV--LGQTILAKACITAGVSFDNNQAHSALYDTNRTAELFCEM 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|229029323|ref|ZP_04185411.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1271]
 gi|228731982|gb|EEL82876.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1271]
          Length = 934

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEVHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|224584057|ref|YP_002637855.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224468584|gb|ACN46414.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 257

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 17/190 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P    N  PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +     A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEI 197

Query: 175 MVGGSQINFG 184
            + GS    G
Sbjct: 198 SIAGSAWAAG 207


>gi|289676753|ref|ZP_06497643.1| ribonuclease T [Pseudomonas syringae pv. syringae FF5]
          Length = 225

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV + +D   +     T+   + P  G      AL+  G
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92

Query: 65  I-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114
           I  D  L+    ++ + + IF            + A  + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  +
Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 210

Query: 175 M 175
           +
Sbjct: 211 V 211


>gi|239502706|ref|ZP_04662016.1| hypothetical protein AbauAB_10367 [Acinetobacter baumannii AB900]
          Length = 179

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 73/168 (43%), Gaps = 15/168 (8%)

Query: 13  DIETTGLDSKN-DRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           D ETTGL+ +N D+IIEI  ++  LD +K     Q  + P  R   P+A  +HGI+   L
Sbjct: 9   DTETTGLEVENGDKIIEIALIKYDLDGAKLEEFVQR-IDPE-RNIDPKAQAVHGISYSDL 66

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P F  I  E     N  +   +AHN  FD  FI  EL+R    P   S    T+   
Sbjct: 67  IGCPKFVDIAEEVASIVNHASL-LVAHNFAFDGPFIATELKRAGMTPKKVSSFC-TMEYG 124

Query: 131 R-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           R      K+P     L  LC   G+     + H A  D  ++   + K
Sbjct: 125 RWATFDGKYPK----LADLCFSLGVEYDASAAHAASYDVDVMMQCFFK 168


>gi|228926672|ref|ZP_04089741.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228833048|gb|EEM78616.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 934

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|323174733|gb|EFZ60349.1| exonuclease family protein [Escherichia coli LT-68]
          Length = 220

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L +   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYRTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|313681812|ref|YP_004059550.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154672|gb|ADR33350.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 232

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 17/124 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ETTGL++K DRI  +G +       T       L   G+K  P +  +H IT+E 
Sbjct: 2   IFLDTETTGLEAK-DRICALGMI-------TEDEAHYELINPGKKIPPSSSAIHHITNEM 53

Query: 70  LKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127
           +KD P+F+ S+ +E     N      ++HNA F       EL  + K+ L    RIIDTL
Sbjct: 54  VKDAPAFAESLSAEKLKLLNTPETILVSHNAPF-------ELDMLQKEGLAWQGRIIDTL 106

Query: 128 SIAR 131
             ++
Sbjct: 107 KCSK 110


>gi|114766856|ref|ZP_01445783.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Pelagibaca bermudensis HTCC2601]
 gi|114540977|gb|EAU44036.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseovarius sp. HTCC2601]
          Length = 401

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 4/117 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD ETTGL    D +++IGAV +L+           L   G    P + K+H ++D  +
Sbjct: 279 VFDTETTGLLPHKDEVVQIGAVRVLNGRIVPGEVMDQLVDPGIPIPPSSTKVHQVSDAMV 338

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +P  +     F  F   + +  +AHNA FD+ F+     R+  +   P  I+DT+
Sbjct: 339 RGQPDIAEAGRRFHRF--AKGSVIVAHNAPFDMAFLRRHRNRMGVEWDHP--ILDTV 391


>gi|66047122|ref|YP_236963.1| ribonuclease T [Pseudomonas syringae pv. syringae B728a]
 gi|302184721|ref|ZP_07261394.1| ribonuclease T [Pseudomonas syringae pv. syringae 642]
 gi|75500938|sp|Q4ZPJ7|RNT_PSEU2 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|63257829|gb|AAY38925.1| Ribonuclease T [Pseudomonas syringae pv. syringae B728a]
          Length = 225

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 22/191 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV + +D   +     T+   + P  G      AL+  G
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92

Query: 65  I-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114
           I  D  L+    ++ + + IF            + A  + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  +
Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 210

Query: 175 M-----VGGSQ 180
           +     +GG Q
Sbjct: 211 VNRWKEMGGWQ 221


>gi|291617286|ref|YP_003520028.1| Rnt [Pantoea ananatis LMG 20103]
 gi|291152316|gb|ADD76900.1| Rnt [Pantoea ananatis LMG 20103]
 gi|327393738|dbj|BAK11160.1| ribonuclease T Rnt [Pantoea ananatis AJ13355]
          Length = 223

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++E+ A+ L +D   +   ++T    + P  G    PEAL   G
Sbjct: 20  VVIDVETAGFNAQTDALLEVAAITLKMDDEGWLHHDQTLHFHVEPFVGALLHPEALAFTG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +     A  +AHNA FD+ F+NA  +R  + 
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKLVRKGIKDTGCNRAIMVAHNATFDLNFMNAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   CK  G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACKAAGMEFDSSQAHSALYDTQQTATLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|145634678|ref|ZP_01790387.1| ribonuclease T [Haemophilus influenzae PittAA]
 gi|145268223|gb|EDK08218.1| ribonuclease T [Haemophilus influenzae PittAA]
 gi|309972517|gb|ADO95718.1| Ribonuclease T [Haemophilus influenzae R2846]
          Length = 229

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 20/190 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L +D   Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73

Query: 56  SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +            Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVM 133

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R  + ++P  P  + DT S+A       +  L   C    I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMM 175
             + ++  M+
Sbjct: 192 RTAKLFCYMV 201


>gi|330957749|gb|EGH58009.1| ribonuclease T [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 225

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           +V D+ET G +S  D ++EI AV + +D   +     T+   + P    N    AL+  G
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFAGANIEAAALEFTG 92

Query: 65  I-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114
           I  D  L+    ++ + + IF            + A  + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETALNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  +
Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 210

Query: 175 M 175
           +
Sbjct: 211 V 211


>gi|329731357|gb|EGG67723.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 784

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +     +  P    L  I + 
Sbjct: 8   VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +     ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYG--KIKDCIFVAHNVDFDLNFIKKAFKDYNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           I +   P+ ++  L+ L + +GIT+  +HR+   A   + L+
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162


>gi|210620723|ref|ZP_03292209.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275]
 gi|210155224|gb|EEA86230.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275]
          Length = 179

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D+ETTGL+      I    +  +   K  R++  F+ P  ++  P   +L GI++E 
Sbjct: 14  IVVDLETTGLNPFEGNEIIEIGITEIRNGKIVRSYSRFVKPE-QEIPPFITELTGISNEM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++ +   +   F  F        IAHNAKFD+ F+N  L ++  + +     I TL +
Sbjct: 73  VANEDTIEQVLPRFRKFIGSNT--IIAHNAKFDIKFLNYYLNKLGLEEI--KDYICTLEL 128

Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++   +      L + C+ YG  I +++ H A  D+   +++++K+
Sbjct: 129 LKKVSSYGGKNKKLATACEYYG--IENKNAHRASSDTQATAELFLKI 173


>gi|15604982|ref|NP_219766.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76788983|ref|YP_328069.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13]
 gi|166154472|ref|YP_001654590.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu]
 gi|166155347|ref|YP_001653602.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237802684|ref|YP_002887878.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804606|ref|YP_002888760.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311062|ref|ZP_05353632.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276]
 gi|255317363|ref|ZP_05358609.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s]
 gi|255348621|ref|ZP_05380628.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70]
 gi|255503161|ref|ZP_05381551.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s]
 gi|255506839|ref|ZP_05382478.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923]
 gi|301335732|ref|ZP_07223976.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1]
 gi|3328673|gb|AAC67854.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX]
 gi|76167513|gb|AAX50521.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13]
 gi|165930460|emb|CAP03953.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu]
 gi|165931335|emb|CAP06907.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231272906|emb|CAX09817.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273918|emb|CAX10710.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           B/Jali20/OT]
 gi|289525300|emb|CBJ14776.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2]
 gi|296434850|gb|ADH17028.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150]
 gi|296435777|gb|ADH17951.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768]
 gi|296436702|gb|ADH18872.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222]
 gi|296437637|gb|ADH19798.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074]
 gi|296438570|gb|ADH20723.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023]
 gi|297140136|gb|ADH96894.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301]
 gi|297748391|gb|ADI50937.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-EC]
 gi|297749271|gb|ADI51949.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-LC]
          Length = 232

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 12/170 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG     DRI+E+ A        T+ +FQ  + P     + EA K+HGIT   
Sbjct: 5   IFYDTETTGTQIDKDRIVELAAYN----GTTSESFQTLVNPEIPIPA-EATKIHGITTAE 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTLS 128
           + D P F   + +F +F    N     +N  FD   +  E +R      +P  R ID+L 
Sbjct: 60  VADAPRFPEAYQKFIEFCGTDNILVAHNNNAFDYPLLVRECRRHGLS--EPQLRTIDSLK 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            A++      ++ L  L + YG        H AL D   L  V+   +VG
Sbjct: 118 WAKKYRTDLPQHSLQYLRQVYG--FEENQAHRALDDVITLYRVF-SALVG 164


>gi|222824026|ref|YP_002575600.1| DNA polymerase III, epsilon subunit [Campylobacter lari RM2100]
 gi|222539248|gb|ACM64349.1| DNA polymerase III, epsilon subunit [Campylobacter lari RM2100]
          Length = 254

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 92/161 (57%), Gaps = 12/161 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           V DIE+TG   K+ +I+EIGAV++ +Y + +R F+ F+     ++ PE + +L GI+ + 
Sbjct: 74  VVDIESTG-GIKSGQILEIGAVKIQNYKEIDR-FESFV---KVESIPENITELTGISLDM 128

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ PS  ++ + F  F   +++ ++AHN +FD  FI+  +   N   +  +R + T+ +
Sbjct: 129 VENAPSLKTVLNNFKLFL--KDSIFVAHNVRFDYHFISKAMYE-NDFGVLLNRRLCTIDL 185

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           A++   S +  L++L +   I   H   H AL D+   S++
Sbjct: 186 AKKCIESPKYGLDALKEFLCIESKH---HRALSDALAASEI 223


>gi|322805639|emb|CBZ03204.1| ATP-dependent DNA helicase UvrD/PcrA,clostridial paralog
           [Clostridium botulinum H04402 065]
          Length = 322

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 6/125 (4%)

Query: 53  RKNSPEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           +K+  ++  +HG +D+FLK+   +   +  +F +F   ++   + HN  FD   +N+EL+
Sbjct: 4   KKSVGDSYLVHGFSDQFLKENGENKKVVLKDFLEFI--KDTVIVGHNVTFDTSILNSELE 61

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           R++ +        DTL IARR +PS  N  L +L K +      +S H A+ D     DV
Sbjct: 62  RLSLEKASFKTYYDTLDIARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDV 119

Query: 171 YIKMM 175
            + M+
Sbjct: 120 LMAML 124


>gi|282879820|ref|ZP_06288549.1| exonuclease [Prevotella timonensis CRIS 5C-B1]
 gi|281306330|gb|EFA98361.1| exonuclease [Prevotella timonensis CRIS 5C-B1]
          Length = 286

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 9/141 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           I+FD+ETTGLD  NDRII+I  +++L   +  R   +F+ P   K  P E ++L GIT+E
Sbjct: 10  IIFDLETTGLDLVNDRIIQISYIKVLPNGEEERE-SIFVNP--EKPIPHEVIELTGITNE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127
            + + P F  I +   + F + +      N  FDV  +  E  R   D       +ID  
Sbjct: 67  DVANAPKFKEIAAHLQNQFKDSDIAGFNSN-HFDVPLLAEEFLRAGIDFDFSKCNLIDVQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
           +I    H   R +L +  K Y
Sbjct: 126 TIF---HKMERRNLAAAYKFY 143


>gi|330973093|gb|EGH73159.1| ribonuclease T [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 213

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV + +D   +     T+   + P  G      AL+  G
Sbjct: 21  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 80

Query: 65  I-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114
           I  D  L+    ++ + + IF              A  + HNA FD+GF+NA + R++  
Sbjct: 81  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 140

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  +
Sbjct: 141 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 198

Query: 175 M 175
           +
Sbjct: 199 V 199


>gi|330950000|gb|EGH50260.1| ribonuclease T [Pseudomonas syringae Cit 7]
          Length = 225

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV + +D   +     T+   + P  G      AL+  G
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92

Query: 65  I-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114
           I  D  L+    ++ + + IF            + A  + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  +
Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 210

Query: 175 M 175
           +
Sbjct: 211 V 211


>gi|218548753|ref|YP_002382544.1| ribonuclease T [Escherichia fergusonii ATCC 35469]
 gi|218356294|emb|CAQ88912.1| ribonuclease T (RNase T) [Escherichia fergusonii ATCC 35469]
 gi|324113426|gb|EGC07401.1| ribonuclease T [Escherichia fergusonii B253]
 gi|325497162|gb|EGC95021.1| ribonuclease T [Escherichia fergusonii ECD227]
          Length = 215

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDNTLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         +++  +  +IF        +     A  +AHNA FD GF+ A   R  + 
Sbjct: 80  IDPNDPQRGAVREYDALHAIFKMVRKGIKDTGCNRAIMVAHNATFDHGFLMAAANRASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACTAAGMAFDSTQAHSALYDTEQTAMLFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|330877336|gb|EGH11485.1| ribonuclease T [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330966675|gb|EGH66935.1| ribonuclease T [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 225

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           +V D+ET G +S  D ++EI AV + +D   +     T+   + P    N    AL+  G
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFAGANIEAAALEFTG 92

Query: 65  I-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114
           I  D  L+    ++ + + IF            + A  + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  +
Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 210

Query: 175 M 175
           +
Sbjct: 211 V 211


>gi|145631430|ref|ZP_01787200.1| ribonuclease T [Haemophilus influenzae R3021]
 gi|145632574|ref|ZP_01788308.1| ribonuclease T [Haemophilus influenzae 3655]
 gi|145640270|ref|ZP_01795854.1| ribonuclease T [Haemophilus influenzae R3021]
 gi|144982967|gb|EDJ90476.1| ribonuclease T [Haemophilus influenzae R3021]
 gi|144986769|gb|EDJ93321.1| ribonuclease T [Haemophilus influenzae 3655]
 gi|145274856|gb|EDK14718.1| ribonuclease T [Haemophilus influenzae 22.4-21]
          Length = 229

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 20/190 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L +D   Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73

Query: 56  SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +            Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVM 133

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R  + ++P  P  + DT S+A       +  L   C    I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMM 175
             + ++  M+
Sbjct: 192 RTAKLFCYMV 201


>gi|71737285|ref|YP_276026.1| ribonuclease T [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257486623|ref|ZP_05640664.1| ribonuclease T [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289624955|ref|ZP_06457909.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289650468|ref|ZP_06481811.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488734|ref|ZP_07006763.1| Ribonuclease T [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|123635391|sp|Q48F11|RNT_PSE14 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|71557838|gb|AAZ37049.1| ribonuclease T [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298156807|gb|EFH97898.1| Ribonuclease T [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|320325627|gb|EFW81689.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327089|gb|EFW83103.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330867245|gb|EGH01954.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330879065|gb|EGH13214.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330889564|gb|EGH22225.1| ribonuclease T [Pseudomonas syringae pv. mori str. 301020]
 gi|331010105|gb|EGH90161.1| ribonuclease T [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 225

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV + +D   +     T+   + P  G      AL+  G
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92

Query: 65  I-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114
           I  D  L+    ++ + + IF            + A  + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  +
Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 210

Query: 175 M 175
           +
Sbjct: 211 V 211


>gi|170727084|ref|YP_001761110.1| ribonuclease T [Shewanella woodyi ATCC 51908]
 gi|169812431|gb|ACA87015.1| ribonuclease T [Shewanella woodyi ATCC 51908]
          Length = 222

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 24/203 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G +++ D ++EI AV +L          ++T    + P  G    PEAL   
Sbjct: 22  VVIDVETAGFNAQTDALLEI-AVTMLKMDDEGILSLDKTLHFHIEPFEGANLEPEALAFT 80

Query: 64  GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113
           GI  T+     + +K +F  IF E               +AHNA FD GF++  ++R  +
Sbjct: 81  GIDPTNPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVSQAIERCAL 140

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++          L   C   GI   +   H AL D+   ++++  
Sbjct: 141 KRTPFHPFATFDTAALSGLA--LGHTVLAKACAIAGIPFDNSEAHSALYDTERTAELFCL 198

Query: 174 MM-----VGGSQINFGFKTNEDR 191
           ++     +GG  I    ++ E++
Sbjct: 199 IVNRWKALGGWPIAIDEESKEEQ 221


>gi|288926239|ref|ZP_06420165.1| exonuclease [Prevotella buccae D17]
 gi|315606363|ref|ZP_07881379.1| DNA polymerase III epsilon chain [Prevotella buccae ATCC 33574]
 gi|288337018|gb|EFC75378.1| exonuclease [Prevotella buccae D17]
 gi|315252054|gb|EFU32027.1| DNA polymerase III epsilon chain [Prevotella buccae ATCC 33574]
          Length = 284

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 9/141 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGLD  NDR+I++  +++       R  ++ + P G+  +PE   L GI+D+ 
Sbjct: 10  VVFDLETTGLDLVNDRVIQLSYIKVCPDGTELRGNEI-INP-GKPIAPEITALTGISDDD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD-PLDPSRIIDTL 127
           +KD+P+F  +     + F  +  ++   N+  FD+  +  E  R   D      R+ID  
Sbjct: 68  VKDRPAFKELAPRLAEEF--KGCDFAGFNSNHFDIPMLAEEFLRAGIDFDFGKCRLIDAQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
           +I    H   R +L +  K Y
Sbjct: 126 AIF---HKMERRNLAAAYKFY 143


>gi|260202912|ref|ZP_05770403.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis K85]
 gi|289572362|ref|ZP_06452589.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           K85]
 gi|289536793|gb|EFD41371.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           K85]
          Length = 329

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETLGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
            D+P F+ I  E  D    +    +AHN  FD  F+ AE +    + P+D   ++ T+ +
Sbjct: 75  DDQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR      N  L +L   +G  +  +  H A  D+ +L+ +    +
Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDARVLTGILAAAL 175


>gi|325579056|ref|ZP_08149012.1| ribonuclease T [Haemophilus parainfluenzae ATCC 33392]
 gi|325159291|gb|EGC71425.1| ribonuclease T [Haemophilus parainfluenzae ATCC 33392]
          Length = 229

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 29/215 (13%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L      N    +     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDGNGNLHPDQKCHFHIEPFEGANI 73

Query: 56  SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFF--NEQNAEW-----IAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +      +++AE      +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDAECQRSIIVAHNAAFDQSFVM 133

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R  + ++P  P  + DT ++A       +  L   C+   I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTATLAGFMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMM-----VGG----SQINFGFKTNEDR 191
             ++++  M+     +GG    +Q N   KT E++
Sbjct: 192 RTAELFCYMVNHLKELGGFPHIAQTNETEKTAENQ 226


>gi|332668025|ref|YP_004450813.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM
           1100]
 gi|332336839|gb|AEE53940.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 463

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 21/165 (12%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL----- 60
           K +  + D+ETTG  +  DRIIEI AV + D ++   +++  +       +PE L     
Sbjct: 2   KKKYAIIDVETTGGKASRDRIIEI-AVVIHDGNQILESWESLI-------NPETLIPWNI 53

Query: 61  -KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             L GI D+ + + P F  +  +  +    + A ++AHNA+FD  FI  E +R+      
Sbjct: 54  TILTGINDQMVANAPKFYEVARKIVEL--TEGAIFVAHNARFDYSFIGEEFKRLGYT--Y 109

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163
             + + TL +AR+  P      L++L + +   I ++++H A+ D
Sbjct: 110 TRKQLCTLRLARQTLPGLYAYGLDALSRHF--NIHNQARHRAMGD 152


>gi|327483724|gb|AEA78131.1| Ribonuclease T [Vibrio cholerae LMA3894-4]
          Length = 224

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D +       T    + P  G      AL+  G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 80  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++       +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGVEFDNREAHSALYDTQKTAELFCT 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|283783236|ref|YP_003373990.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis
           409-05]
 gi|283441075|gb|ADB13541.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis
           409-05]
          Length = 359

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 20/174 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL------CPNGRKNS---PEAL 60
           +V D ETTGL+SK D+IIEIGAV+ +D       FQ  +        N  KN+    E +
Sbjct: 179 VVIDCETTGLNSKVDKIIEIGAVKFID--GKIEEFQKLININCDSVSNFNKNNFIPNEII 236

Query: 61  KLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---D 116
           +L GIT   L+           EF +F   +    + +N +FD+ F+N+ L  +++    
Sbjct: 237 ELTGITSNMLESYGVRLDLALKEFINFV--ERLPVLGYNVQFDMSFLNSALSSLDERFDH 294

Query: 117 PLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHLL 167
            L  ++I D     +++    +N  L ++   Y I  ++ HR+   A L +HL+
Sbjct: 295 SLSINKIFDISRFVKKEKKFLKNYQLKTVLHEYNIAESVPHRALLDARLTAHLV 348


>gi|83643302|ref|YP_431737.1| putative exonuclease [Hahella chejuensis KCTC 2396]
 gi|83631345|gb|ABC27312.1| putative exonuclease [Hahella chejuensis KCTC 2396]
          Length = 192

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 8/95 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D ETTGLD + + +IEI  +++    + N  F   + P      PEA ++HG+T+
Sbjct: 16  RVVVLDTETTGLDDQAE-VIEISVMDM----RGNVLFDQLVRPLN-PVPPEAAEIHGVTN 69

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           E L +KP+F  ++   W     +    +A+NA FD
Sbjct: 70  EKLANKPNFPDVYISLWRAIGGRTV--VAYNADFD 102


>gi|37677065|ref|NP_937461.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
 gi|37201610|dbj|BAC97431.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
          Length = 239

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGLD+K+D+I+ IG V+L        + +  L  +G     E+ +++G+T + 
Sbjct: 54  LALDFETTGLDAKHDKILSIGMVDLTLEGINLSSAEEILLNHGAYIKAESARINGLTPQA 113

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   S          F   Q    +AH+A  + GF+ A  Q+  +    P   +DTL I
Sbjct: 114 LEQGCSLEQGMMRL--FERAQGKVLLAHSAIIEQGFLQAFAQQHFQLAKLPCHFVDTLQI 171

Query: 130 ARR 132
            +R
Sbjct: 172 EKR 174


>gi|309807268|ref|ZP_07701238.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166328|gb|EFO68537.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
          Length = 233

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 16/180 (8%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   K +DRII+ G   + D  K  +T+   + P   K  P A++ L GI+++
Sbjct: 13  VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +FS    +  +    +N  ++AHN  FD+ F+N EL      P D  + IDT+ 
Sbjct: 70  EAAKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFD-GKAIDTVE 126

Query: 129 IARRKHPSS-----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-MVGGSQIN 182
           +A+   P+      ++  N+L  ++     HR+   AL+ + +L  +  K+ M+  + +N
Sbjct: 127 LAQIAFPTIPSYKLQDITNTLHIKHA--NPHRADSDALVTAKMLLKIIDKIEMLPTATLN 184


>gi|294792636|ref|ZP_06757783.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           6_1_27]
 gi|294456535|gb|EFG24898.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           6_1_27]
          Length = 862

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 6/155 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+E+TG D+  DRII+I A+ + +  +    F+ F+ P       E  ++HG +D +
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLEAFERFINPGIPVGQSE--EVHGFSDAY 552

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L++     +I  + +  F+ +NA  + HN  +DV     EL R N    +   I DTL I
Sbjct: 553 LQEHGEEPAIVLQAFKEFS-KNAIIVGHNVNYDVTIFTNELARHNLGNPEFKAIYDTLDI 611

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163
            RR +P+  N  L  L   +   I H   H A+ D
Sbjct: 612 YRRFYPNLPNHKLGFLASEF--PIHHEPTHNAMDD 644


>gi|88705709|ref|ZP_01103419.1| Ribonuclease T [Congregibacter litoralis KT71]
 gi|88700222|gb|EAQ97331.1| Ribonuclease T [Congregibacter litoralis KT71]
          Length = 210

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 20/193 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NG 52
           M  K++ R    ++ D+ET G  S  D I+EI A  V + D  +   + T    + P  G
Sbjct: 1   MSMKSRFRGFLPVIVDMETGGFSSSTDAILEIAATVVRMDDTGQIAVHETHSFNVAPFEG 60

Query: 53  RKNSPEALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVG 104
                 AL   GI       E L +K +   +F        +Q    A  + HNA FD G
Sbjct: 61  ANIEQSALDFTGIDPWHPFREALAEKEALGELFQIIRREIRDQECTRAILVGHNAHFDAG 120

Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+NA ++R  I ++P  P    DT +++   +   +  L   C   GI   +   H A  
Sbjct: 121 FLNAAVERCEIKRNPFHPFSHFDTATLSGLAY--GQTVLAKSCYEAGIPFDNEQAHSAAY 178

Query: 163 DSHLLSDVYIKMM 175
           D+   ++++  ++
Sbjct: 179 DAERTAELFCGIV 191


>gi|323496850|ref|ZP_08101887.1| ribonuclease T [Vibrio sinaloensis DSM 21326]
 gi|323318109|gb|EGA71083.1| ribonuclease T [Vibrio sinaloensis DSM 21326]
          Length = 220

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D +   +   T    + P  G     EAL   G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLKMDENGDLQPASTIHFHVEPFEGANIEKEALDFIG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFI--NAELQRI 113
           + D F  L+     S    E +     EQ A        +AHNA+FD  F+   +E  ++
Sbjct: 80  LRDPFSPLRGAIPESEALKEIYKLVRKEQKAADCSRAIIVAHNAQFDHSFVMQASERSKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++   +   +  L   CK  G+   ++  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMDFDNKEAHSALYDTQKTAELFCG 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|326800820|ref|YP_004318639.1| DNA polymerase III subunit epsilon [Sphingobacterium sp. 21]
 gi|326551584|gb|ADZ79969.1| DNA polymerase III, epsilon subunit [Sphingobacterium sp. 21]
          Length = 463

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 9/156 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65
           M   + DIETTG  +    I EI A+ + D +     ++  + P  + + P  +  L GI
Sbjct: 1   MEYAIVDIETTGGHAAGHGITEI-AICIHDGAGICHRYETLVNP--QAHIPLHISALTGI 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++E + D P+F+ I +  +     +   ++AHN  FD  FI   L         P   + 
Sbjct: 58  SNEMVADAPTFAEIAATVYQLL--EGRIFVAHNVNFDYSFIKHHLAFCGYSWNAPK--LC 113

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           T+ ++R+  P  +   L  LC++  I+I++R + G 
Sbjct: 114 TVRLSRKVLPGFASYSLGKLCQQLNISITNRHRAGG 149


>gi|170769422|ref|ZP_02903875.1| exodeoxyribonuclease X [Escherichia albertii TW07627]
 gi|170121746|gb|EDS90677.1| exodeoxyribonuclease X [Escherichia albertii TW07627]
          Length = 220

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K        + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVVD-GKIVNPMSHLVRPD-RPITPQAMAIHRITESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|238787143|ref|ZP_04630943.1| Ribonuclease T [Yersinia frederiksenii ATCC 33641]
 gi|238724931|gb|EEQ16571.1| Ribonuclease T [Yersinia frederiksenii ATCC 33641]
          Length = 228

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 22/200 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAQTDALLEIAAVTLQMNKEGWLLPDETLHFHVDPFEGANLQPEALAFNG 90

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF        +Q    A  +AHNA FD  F+ A  +R  + 
Sbjct: 91  IDPTNPLRGAVSEYDALHAIFKAVRKGLKDQGCNRAIIVAHNAHFDHSFVMAAAERASLK 150

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ ++
Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCEL 208

Query: 175 M-----VGGSQINFGFKTNE 189
           +     +GG  +  G   +E
Sbjct: 209 VNRWKKLGGWPVPAGESESE 228


>gi|172057786|ref|YP_001814246.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Exiguobacterium sibiricum 255-15]
 gi|171990307|gb|ACB61229.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium
           sibiricum 255-15]
          Length = 937

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 9/157 (5%)

Query: 10  IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D+ETTG   K+ D +IEIG   + D   T R    F+ P  +   P   +L GITDE
Sbjct: 6   VVVDLETTGHSIKSGDEMIEIGVAVIEDGQITER-LSAFVRPQ-KPIPPFISQLTGITDE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    SF++I        +     ++AHN +FD+ F+N  L+     P     +IDT+ 
Sbjct: 64  DVAQAESFATIAPRVLQLLD--GGVFVAHNVQFDLTFLNEALEEEGYLPYT-GPVIDTVE 120

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164
           +AR   P++  + L+ L +   + ++H   H A  D+
Sbjct: 121 LARILLPTAESHSLSHLTE--ALQLTHHEAHRAGSDA 155


>gi|269104806|ref|ZP_06157502.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161446|gb|EEZ39943.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 249

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 13/187 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+ETTGLDS+ D+II +G V   LD     ++    + P+   N  E++ +HGITD 
Sbjct: 60  VALDLETTGLDSQQDQIISVGLVPFTLDRIYCRQSAHWVVNPHRLLNE-ESVVIHGITDS 118

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIIDTL 127
            ++D P    I  +       +    + H    + GF+N A L+R+ +    P  ++DTL
Sbjct: 119 EVQDAPDLRVILEQVLQALAGKIV--VVHYKNIERGFLNQALLKRLGEGIEFP--VVDTL 174

Query: 128 SI-ARRKHPSSRNDLNSL-CKRYG-ITISH-RSKHG--ALLDSHLLSDVYIKMMVGGSQI 181
            + A  ++   R   N L  K+ G + + H R ++G       H L+D      +  +Q+
Sbjct: 175 DLEAAIQYRQCRGFFNRLKGKKPGSVRLGHARERYGLPTYQPHHALTDALASAELLQAQL 234

Query: 182 NFGFKTN 188
            + F  N
Sbjct: 235 AYYFTPN 241


>gi|237798772|ref|ZP_04587233.1| ribonuclease T [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021625|gb|EGI01682.1| ribonuclease T [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 225

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 22/191 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV + +D   +     T+   + P  G      AL+  G
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92

Query: 65  I-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114
           I  D  L+    ++ + + IF            + A  + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAINDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  +
Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 210

Query: 175 M-----VGGSQ 180
           +     +GG Q
Sbjct: 211 VNRWKEMGGWQ 221


>gi|205352416|ref|YP_002226217.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207856601|ref|YP_002243252.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|205272197|emb|CAR37055.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206708404|emb|CAR32708.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326627468|gb|EGE33811.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 232

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           +RR  P  +    SL K   +++        H AL D ++ + + I +M
Sbjct: 103 SRRLWPGIKYSNMSLYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|319896653|ref|YP_004134846.1| ribonuclease t [Haemophilus influenzae F3031]
 gi|317432155|emb|CBY80506.1| ribonuclease T [Haemophilus influenzae F3031]
          Length = 229

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 20/190 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L +D   Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73

Query: 56  SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +            Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVM 133

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R  + ++P  P  + DT S++       +  L   C    I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLSGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMM 175
             ++++  M+
Sbjct: 192 RTAELFCYMV 201


>gi|293396307|ref|ZP_06640585.1| ribonuclease T [Serratia odorifera DSM 4582]
 gi|291421096|gb|EFE94347.1| ribonuclease T [Serratia odorifera DSM 4582]
          Length = 226

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 22/195 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIET G +++ D ++EI AV L +D   + + + T    + P  G    PEAL  +G
Sbjct: 31  VVIDIETAGFNARTDALLEIAAVTLKMDQDGWLQQDETLHFHVEPFEGANLQPEALAFNG 90

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +Q    A  +AHNA FD  F+ A  +R  + 
Sbjct: 91  IDPHNPLRGAVSEYDALHAIFKAVRKGIKDQGCNRAIIVAHNANFDHSFLMAAAERAGLK 150

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   G+       H AL D+   + ++ ++
Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACIAAGMAFDSSQAHSALYDTEQTALLFCEL 208

Query: 175 M-----VGGSQINFG 184
           +     +GG  +  G
Sbjct: 209 VNRWKRLGGWPLAVG 223


>gi|254558840|ref|YP_003065935.1| hypothetical protein METDI0201 [Methylobacterium extorquens DM4]
 gi|254266118|emb|CAX21870.1| hypothetical protein, putative exonuclease domain [Methylobacterium
           extorquens DM4]
          Length = 297

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 10/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ET   + + D    +G +  ++  +  R     + P   + SP  +++HGI 
Sbjct: 1   MKVVAIDFETA--NERRDSACAVG-LAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGIL 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P+F  + +EF    +      +AHNA FD+G + A L     +P+       T
Sbjct: 58  PADVRDAPTFPEVIAEF--LPDLSGGLMLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L IARR  P  + + L  +  R GI   H   H A  D+   +++ +  +
Sbjct: 115 LQIARRVFPDPAGHGLAKVAGRLGIRFEH---HDAGEDAFACAEIALAAL 161


>gi|312172307|emb|CBX80564.1| ribonuclease T [Erwinia amylovora ATCC BAA-2158]
          Length = 224

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D+K + ++EI AV L +D   + + + T    + P  G     EAL  +G
Sbjct: 22  VVIDVETAGFDAKTNALLEIAAVTLKMDSEGWLEKDETLHFNVEPFPGSVMLAEALAFNG 81

Query: 65  ITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +     A  +AHNA FD+ F+NA  +R  + 
Sbjct: 82  IDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 141

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   G++      H AL D+   +D++ ++
Sbjct: 142 RNPFHPFVTFDTAALSGLVL--GQTVLAKACNAAGMSFDSAQAHSALYDTLQTADLFCEL 199

Query: 175 M 175
           +
Sbjct: 200 V 200


>gi|224476950|ref|YP_002634556.1| hypothetical protein Sca_1466 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421557|emb|CAL28371.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 185

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 9/166 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   + K   I  +G V+++D ++   TF   + PN    S + + +HGI  E 
Sbjct: 8   VALDFETA--NGKRTSICSVGMVKVVD-NEIVETFYTLVNPNDYF-SQQNINVHGIQPED 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P F+ +      F   +N   +AHNA FD+  ++A +Q +  D  + +    +L +
Sbjct: 64  VATAPVFNFVLPYMLQFI--ENLPVVAHNAAFDMTVLHASIQALGLDTPEMTYFC-SLQL 120

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR   ++R  LN + + Y +       H AL D+   + +  +++
Sbjct: 121 ARRTVNANRYGLNHMMEYYHLDF--HGHHDALNDAKACAMITFRLL 164


>gi|240136987|ref|YP_002961456.1| hypothetical protein MexAM1_META1p0217 [Methylobacterium extorquens
           AM1]
 gi|240006953|gb|ACS38179.1| hypothetical protein, putative exonuclease domain [Methylobacterium
           extorquens AM1]
          Length = 297

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 10/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ET   + + D    +G +  ++  +  R     + P   + SP  +++HGI 
Sbjct: 1   MKVVAIDFETA--NERRDSACAVG-LAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGIL 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P+F  + +EF    +      +AHNA FD+G + A L     +P+       T
Sbjct: 58  PADVRDAPTFPEVIAEF--LPDLSGGLMLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L IARR  P  + + L  +  R GI   H   H A  D+   +++ +  +
Sbjct: 115 LQIARRVFPDPAGHGLAKVASRLGIRFEH---HDAGEDAFACAEIALAAL 161


>gi|322389907|ref|ZP_08063447.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           parasanguinis ATCC 903]
 gi|321143343|gb|EFX38781.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           parasanguinis ATCC 903]
          Length = 836

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 90/175 (51%), Gaps = 10/175 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ + K +  + D+E T   S N +II++G V +++  +  ++++  + P+ R +     
Sbjct: 19  IMTRQKRKYAIVDLEATSAGS-NAKIIQVGIV-IIEDGRIRQSYETDVNPHERLDE-HIK 75

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+TD  LK  P F+ +  E ++    ++A ++AHN KFD   +   L     +   P
Sbjct: 76  QLTGLTDARLKKAPEFAQVAKEIFELI--EDAVFVAHNVKFDANLLAEALFWEGFELTTP 133

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              IDT+ +++  +P+  R +L +L     I + H   H AL D+   + + +K+
Sbjct: 134 R--IDTVELSQIFYPTLERYNLGALAAELEIELHH--AHSALADAMATAQLLLKL 184


>gi|253688762|ref|YP_003017952.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755340|gb|ACT13416.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 223

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++E+ AV L +D   + + + T    + P  G    P AL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +   IF        EQN   A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPTNPLRGAVSEYDALHEIFKVVRKGIKEQNCNRAIIVAHNATFDHSFMMAAAERCSLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D++  + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|294140554|ref|YP_003556532.1| ribonuclease T [Shewanella violacea DSS12]
 gi|293327023|dbj|BAJ01754.1| ribonuclease T [Shewanella violacea DSS12]
          Length = 223

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G +S+ D ++EI AV +L          ++T    + P  G    P+AL  +
Sbjct: 20  VVIDVETAGFNSQTDALLEI-AVTMLKMDDEGILSLDKTLHYHIEPFEGANLEPDALAFN 78

Query: 64  GI--TDEF---LKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI  T+     + +K +F  IF E            +  +AHNA FD GF++  ++R  +
Sbjct: 79  GIDPTNPLRGAVSEKEAFLEIFKEVKKAQKAVGCHRSIIVAHNAAFDHGFVSKAIERCAL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++          L   C   GI   +   H AL D+   ++++  
Sbjct: 139 KRTPFHPFATFDTAALSGLA--LGHTVLAKACSIAGIDFDNNEAHSALYDTERTAELFCH 196

Query: 174 MM 175
           ++
Sbjct: 197 IV 198


>gi|315650464|ref|ZP_07903534.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Eubacterium saburreum DSM 3986]
 gi|315487260|gb|EFU77572.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Eubacterium saburreum DSM 3986]
          Length = 299

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 10/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ DIET GLD++ + IIE+GA++    S     FQ  +   G       + L GIT + 
Sbjct: 131 VIVDIETDGLDNEKNVIIEVGAIK--SVSGVLSEFQSLVNYEGTL-PKHIVSLTGITTDM 187

Query: 70  L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L KD      +  +F DF  +   + I +N  FD+ FIN  L +   + L+  R  D + 
Sbjct: 188 LKKDGSDIVVVLKDFVDFLGD--LDIIGYNIGFDIDFINIALLKSGLENLNNKR-YDLMR 244

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + +     N  L ++ K YG  +  +  H AL D+ ++  + +K+
Sbjct: 245 FVKNEKLFLENYKLQTVIKEYG--VGDKVPHRALEDAKMIYKLAMKV 289


>gi|163782941|ref|ZP_02177936.1| hypothetical protein HG1285_00160 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881621|gb|EDP75130.1| hypothetical protein HG1285_00160 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 215

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 85/168 (50%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGIT-D 67
           +VFD ETTGLD +   ++ IGA+ +++YS   + +F  F+ P  ++ +  ++++HGIT  
Sbjct: 41  VVFDTETTGLDLRRAELVSIGALRVVNYSFNLSESFHRFVKP--KELTRVSVEIHGITPH 98

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E  K   S   +  +F ++   + +  +  N +FD   +     ++   PL   R +D  
Sbjct: 99  ELEKKAESHDRVLEDFMEYV--RGSVLVGFNVEFDRKIVEKYSLKVLGLPLLNYR-LDVF 155

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +  +K       L  + +  GI +     H AL D+++ + V++K++
Sbjct: 156 RLW-KKRGGREGSLKDIAEELGIPVV--GAHSALDDAYITALVFLKLL 200


>gi|221195203|ref|ZP_03568259.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626]
 gi|221185106|gb|EEE17497.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626]
          Length = 1031

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 10/149 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGL  K   +IEI A ++       R F+ F+ P  +   PE + L  ITDE 
Sbjct: 65  VVLDTETTGLSFKTCGLIEISAAKISGREIVER-FETFVDPR-KPIPPEIVALTHITDED 122

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P      S   DF        +AHNA FD  FI    +R+       +  IDTLS+
Sbjct: 123 VAGAPRAKEAVSALADFVG--GLPVLAHNAVFDRTFI----ERVPGGHEVSNTWIDTLSL 176

Query: 130 ARRKHPS-SRNDLNSLCKRYG-ITISHRS 156
           +R   P  S + L+ + + +G + ++HR+
Sbjct: 177 SRIALPRLSSHKLSRMAEAFGALRVTHRA 205


>gi|229102245|ref|ZP_04232954.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-28]
 gi|228681146|gb|EEL35314.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-28]
          Length = 934

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+      +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPVFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|94499178|ref|ZP_01305716.1| ribonuclease T [Oceanobacter sp. RED65]
 gi|94428810|gb|EAT13782.1| ribonuclease T [Oceanobacter sp. RED65]
          Length = 222

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 89/206 (43%), Gaps = 22/206 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G +S+ D ++EI  V ++D  +             + P  G      AL   
Sbjct: 19  VVVDVETAGFNSQTDALLEIAMV-IMDMDEQGNMLPGPAMSAHIKPFEGANLEQSALDFT 77

Query: 64  GITDEFLKDK------PSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR-- 112
           GI D F  D+      P+   +F         +    A  + HNA FD+GF+NA ++R  
Sbjct: 78  GI-DPFDPDRRAEDEGPALKDMFKTIRKAMKVKGCKRAILVGHNAHFDLGFLNAAIERNN 136

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I + P  P    DT +++          L   CK  GI   + S H AL D+   ++++ 
Sbjct: 137 IKRSPFHPFSGFDTATLSGLA--LGHTVLARSCKLAGIDFDNHSAHSALYDTQKTAELFA 194

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKK 198
            ++    Q+  G+    ++  KE +K
Sbjct: 195 LIVNKWKQLG-GWDWAYEQHVKENEK 219


>gi|50954845|ref|YP_062133.1| DNA polymerase III subunit epsilon [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951327|gb|AAT89028.1| DNA polymerase III, epsilon subunit [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 227

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 10/151 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTG+D +  R++    + LLD        + +L   G +   EA  +HGI+ E  
Sbjct: 9   VFDLETTGVDVETARVV-TAHIGLLDEHGEIVHGRSWLLDPGVEIPAEASAVHGISTELA 67

Query: 71  KDKP-----SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRII 124
           ++K        + I  +    F  ++   +A+NA +D   ++ E +R   +PL  P  II
Sbjct: 68  REKGMDAARGIAGIVDQLRRLFA-RSVPVVAYNAPYDFSLLDREARRHGIEPLHSPGPII 126

Query: 125 DTLSIARR--KHPSSRNDLNSLCKRYGITIS 153
           D L I R   K    +  L      YGI ++
Sbjct: 127 DPLVIDRAVDKFRPGKRTLTVTADHYGIVLT 157


>gi|313123567|ref|YP_004033826.1| 3'-5' exonuclease with to crispr-associated protein [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280130|gb|ADQ60849.1| 3'-5' exonuclease with to CRISPR-associated protein [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 290

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 13/168 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIETTGL++++D+I+ IGAV      K + T    L         + ++L GIT   
Sbjct: 127 VAVDIETTGLNTESDQILSIGAV------KHDGTEFYRLIKQDIDVPKQIVELTGITPAM 180

Query: 70  L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L K+      +  E  DF  +     + +N +FD  F+N E ++     L  + I D L 
Sbjct: 181 LDKEGVPLQDVLGELTDFVGD--VPIVGYNFRFDSAFLNREYRKCGMQEL-KNEIKDLLP 237

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +RK     N  L ++   YG  I ++  H A+ D+    ++ +K++
Sbjct: 238 VVKRKEKFLDNYKLQTVLSNYG--IENKVPHNAVSDARATKELAMKLI 283


>gi|307720491|ref|YP_003891631.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978584|gb|ADN08619.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
          Length = 269

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 6/134 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIET G   +  +IIE+ AV++ +    +R F+  +  + ++ +P   ++ GI  +  
Sbjct: 71  IVDIETNGSKIEKHQIIELAAVKVKNGQIIDR-FESLV--HTKEINPHITEITGIAADDT 127

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + P    +   F  F    NA ++AH+ KFD  FI+  LQ+I  +PL  +R + +L++A
Sbjct: 128 TNAPQLKDVLIRFKLFLG--NAVFVAHDVKFDYSFISKSLQKIGLEPL-LNRSLCSLALA 184

Query: 131 RRKHPSSRNDLNSL 144
            R   S R  L+ L
Sbjct: 185 ERTVVSYRYALSYL 198


>gi|330004210|ref|ZP_08304836.1| exonuclease [Klebsiella sp. MS 92-3]
 gi|328536727|gb|EGF63048.1| exonuclease [Klebsiella sp. MS 92-3]
          Length = 180

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 6/165 (3%)

Query: 12  FDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEF 69
            DIETTGLD     +IIEI  V   +   + +  +V L  N R+N   +A  +H I+ E 
Sbjct: 7   IDIETTGLDVYSGHKIIEIALVSY-ELETSRKINEVSLRFNPRRNIDAKAQAVHHISLEM 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLS 128
           L D P F    +         +  W+AHN + FD+ FI  +++    + L    +IDT+ 
Sbjct: 66  LADCPLFEDKAASLAKALAAADV-WVAHNGRQFDIPFITKQMRDCGVE-LIQRPLIDTMD 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                       L  L    G        HGAL D+ L+   +IK
Sbjct: 124 ARWACESGKIPRLQELAVAMGFVYDEEKAHGALYDTDLMMQCFIK 168


>gi|254509159|ref|ZP_05121258.1| ribonuclease T [Vibrio parahaemolyticus 16]
 gi|219547910|gb|EED24936.1| ribonuclease T [Vibrio parahaemolyticus 16]
          Length = 213

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L +D S   +   T    + P  G     EAL   G
Sbjct: 14  VVIDVETAGFNAKTDALLEICAVTLKMDDSGDLQPASTIHFHVEPFEGANIEKEALDFIG 73

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFI--NAELQRI 113
           + D F  L+     S    E +     EQ A        +AHNA+FD  F+   ++  ++
Sbjct: 74  LRDPFSPLRGAIPESEALKEIYKLVRKEQKAADCSRAIIVAHNAQFDHSFVMEASDRSKL 133

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++   +   +  L   CK  G+   ++  H AL D+   ++++  
Sbjct: 134 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMEFDNKEAHSALYDTKKTAELFCG 191

Query: 174 MM 175
           ++
Sbjct: 192 IV 193


>gi|213970865|ref|ZP_03398988.1| ribonuclease T [Pseudomonas syringae pv. tomato T1]
 gi|213924388|gb|EEB57960.1| ribonuclease T [Pseudomonas syringae pv. tomato T1]
          Length = 203

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQV--FLCPNGRKNSPE--A 59
           +V D+ET G +S  D ++EI AV +        + +    F+V  F+  N    + E   
Sbjct: 11  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFTG 70

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114
           +KL       + ++ + + IF              A  + HNA FD+GF+NA + R++  
Sbjct: 71  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 130

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  +
Sbjct: 131 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 188

Query: 175 M 175
           +
Sbjct: 189 V 189


>gi|163849777|ref|YP_001637820.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           extorquens PA1]
 gi|163661382|gb|ABY28749.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           extorquens PA1]
          Length = 297

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 10/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ET   + + D    +G +  ++  +  R     + P   + SP  +++HGI 
Sbjct: 1   MKVVAIDFETA--NERRDSACAVG-LAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGIL 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P+F  + +EF    +      +AHNA FD+G + A L     +P+       T
Sbjct: 58  PADVRDAPTFPEVIAEF--LPDLSGGLMLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L IARR  P  + + L  +  R GI   H   H A  D+   +++ +  +
Sbjct: 115 LQIARRVFPDPAGHGLAKVAGRLGIRFEH---HDAGEDAFACAEIALAAL 161


>gi|229096133|ref|ZP_04227106.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-29]
 gi|229115089|ref|ZP_04244499.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-3]
 gi|228668229|gb|EEL23661.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-3]
 gi|228687093|gb|EEL40998.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-29]
          Length = 934

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+      +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPVFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|283955874|ref|ZP_06373364.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792534|gb|EFC31313.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 253

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 9/145 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           + DIE+TG  SK + I+EIGAV++ +  +  R FQ F+     K  PE + +L GIT E 
Sbjct: 74  IVDIESTGGVSKGE-ILEIGAVKIQNSKEIGR-FQSFV---KVKEIPENITELTGITYEM 128

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++  S + + S+F  F   +++ ++AHN +FD  FI+  L       L   RI  T+  
Sbjct: 129 VENALSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 185

Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154
           A+    S +  L  L +  G+  +H
Sbjct: 186 AQCCIESPKYKLEVLKEFLGVENTH 210


>gi|215405762|ref|ZP_03417943.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           02_1987]
 gi|215413638|ref|ZP_03422306.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           94_M4241A]
 gi|215448050|ref|ZP_03434802.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85]
 gi|289747550|ref|ZP_06506928.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           02_1987]
 gi|289759871|ref|ZP_06519249.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85]
 gi|294995379|ref|ZP_06801070.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 210]
 gi|298527188|ref|ZP_07014597.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis 94_M4241A]
 gi|289688078|gb|EFD55566.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           02_1987]
 gi|289715435|gb|EFD79447.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85]
 gi|298496982|gb|EFI32276.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis 94_M4241A]
 gi|326905550|gb|EGE52483.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           W-148]
          Length = 329

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
            D+P F+ I  E  D    +    +AHN  FD  F+ AE +    + P+D   ++ T+ +
Sbjct: 75  DDQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR      N  L +L   +G  +  +  H A  D  +L+ +    +
Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDVRVLTGILAAAL 175


>gi|27468061|ref|NP_764698.1| dinG protein [Staphylococcus epidermidis ATCC 12228]
 gi|57866955|ref|YP_188602.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus epidermidis RP62A]
 gi|251810883|ref|ZP_04825356.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876111|ref|ZP_06284978.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus epidermidis SK135]
 gi|293366576|ref|ZP_06613253.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|81819394|sp|Q5HP88|DING_STAEQ RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81842831|sp|Q8CP71|DING_STAES RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|27315606|gb|AAO04740.1|AE016747_237 dinG protein [Staphylococcus epidermidis ATCC 12228]
 gi|57637613|gb|AAW54401.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus epidermidis RP62A]
 gi|251805563|gb|EES58220.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295136|gb|EFA87663.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus epidermidis SK135]
 gi|291319345|gb|EFE59714.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329725381|gb|EGG61864.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU144]
 gi|329735254|gb|EGG71546.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU045]
 gi|329737465|gb|EGG73719.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU028]
          Length = 902

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +     +  P    L  I +E
Sbjct: 8   VVDLETTGNQLDYDEIIQIG----ITFVRQNQVIDTYHSMIRTDLEIPPFIQALTSIEEE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ +  + +     ++  ++AHN  FD+ FI    ++ N     P R++DTL 
Sbjct: 64  MLVQAPYFNEVADDIYQLI--KDCVFVAHNISFDLNFIKKAFEKCNI-QFKPKRVMDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           + +   P+ ++  L++L + + I +  +HR+   A   + L+
Sbjct: 121 LFKIAFPTDKSYQLSALAESHHIPLNNAHRADEDATTTAKLM 162


>gi|319400807|gb|EFV89026.1| putative dnaQ family exonuclease/DinG family helicase
           [Staphylococcus epidermidis FRI909]
          Length = 902

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +     +  P    L  I +E
Sbjct: 8   VVDLETTGNQLDYDEIIQIG----ITFVRQNQVIDTYHSMIRTDLEIPPFIQALTSIEEE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ +  + +     ++  ++AHN  FD+ FI    ++ N     P R++DTL 
Sbjct: 64  MLVQAPYFNEVADDIYQLI--KDCVFVAHNISFDLNFIKKAFEKCNI-QFKPKRVMDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           + +   P+ ++  L++L + + I +  +HR+   A   + L+
Sbjct: 121 LFKIAFPTDKSYQLSALAESHHIPLNNAHRADEDATTTAKLM 162


>gi|312884148|ref|ZP_07743860.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368196|gb|EFP95736.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 239

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 23/192 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITD 67
           +  D ETTGLDS +D II IG V   +D    N+     + P  RK  P E++ +HGIT 
Sbjct: 50  LAMDFETTGLDSNDDDIITIGTVPFTIDRIMINKAKHWTVKP--RKQLPEESVVIHGITH 107

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQ-RINKDPLDPSRII 124
             + D P  S ++ E      EQ A    + H  + +  F +  L+ RIN+    P  +I
Sbjct: 108 SDILDAPDLSGVYREVL----EQMAGKVMVVHYQRIEREFFDKALKTRINEGIEFP--VI 161

Query: 125 DTL---SIARRKHPSSRNDLNSLCKRYGITI---SHRSKHGALL--DSHLLSDVYIKMMV 176
           DT+   +IA++K  S    +N L +R   ++   + RS++G  L    H L+D      +
Sbjct: 162 DTMQLETIAQQKMTSGL--INRLKRRQPESVRLGASRSRYGLPLYPPHHALTDAVATAEL 219

Query: 177 GGSQINFGFKTN 188
             +QI   +K N
Sbjct: 220 LQAQIAHHYKRN 231


>gi|226330322|ref|ZP_03805840.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198]
 gi|225201117|gb|EEG83471.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198]
          Length = 212

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   + K + T    + P  G    P AL+  G
Sbjct: 20  VVIDVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVEPFEGANLEPAALEFTG 79

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF        + +   A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKMVRKGMKDADCNRAIIVAHNANFDHSFVMAAAERAGLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI    +  HGAL D++  S ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTILAKACITAGIPFDSKLAHGALYDTNRTSLLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|171780060|ref|ZP_02920964.1| hypothetical protein STRINF_01848 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281408|gb|EDT46843.1| hypothetical protein STRINF_01848 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 827

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++ N  +  V D+E TG  +  + II++G V +++  +  +T+Q  + P+    +   +
Sbjct: 1   MMQVNSQKYAVVDLEATGAHAMAE-IIQVGIV-IIENDQIVKTYQTDVNPH-EALTEHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITDE L   P FS +  E +   +  +  ++AHN KFD   +  +L     +   P
Sbjct: 58  HLTGITDEQLAKAPDFSKVAQEIYHLIS--DCVFVAHNVKFDANLLAEKLFLEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             ++DT+ +++  +P+  +  L  L     + ++    H A+ D++  + + +K+
Sbjct: 116 --LVDTVELSQVFYPTLEKYTLGHLADVLQLDLT--DAHTAISDAYATAQLLLKL 166


>gi|157374891|ref|YP_001473491.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis
           HAW-EB3]
 gi|157317265|gb|ABV36363.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis
           HAW-EB3]
          Length = 228

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 15/163 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+E TGLD  +D+I+ IG + +     + +R  Q  +  NG  +  ++  +HGI D 
Sbjct: 44  MAVDLEMTGLDPNSDQILSIGLIPIEKGLLQLSRAEQKLIQING--SVGQSATIHGIVDH 101

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+   S  S    F D    +    +AH++  D+GF+   ++++  + +     IDTL+
Sbjct: 102 QLQAGVSIDSAIEWFLD--RTRGKLLVAHHSPLDLGFLQVAIKQVTGESIKL-LAIDTLA 158

Query: 129 IARRKHPSSRNDLN------SLCK-RYGITISHRSKHGALLDS 164
           + R++    ++ L         C+ RYG+ +   + H AL+D+
Sbjct: 159 LERKRLLRKQDVLKEGTLRLGACRARYGLPV--YAAHNALVDA 199


>gi|28871300|ref|NP_793919.1| ribonuclease T [Pseudomonas syringae pv. tomato str. DC3000]
 gi|301384500|ref|ZP_07232918.1| ribonuclease T [Pseudomonas syringae pv. tomato Max13]
 gi|302130507|ref|ZP_07256497.1| ribonuclease T [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|37999382|sp|Q87XM0|RNT_PSESM RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|28854550|gb|AAO57614.1| ribonuclease T [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331015669|gb|EGH95725.1| ribonuclease T [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 225

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQV--FLCPNGRKNSPE--A 59
           +V D+ET G +S  D ++EI AV +        + +    F+V  F+  N    + E   
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFTG 92

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114
           +KL       + ++ + + IF            + A  + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  +
Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 210

Query: 175 M 175
           +
Sbjct: 211 V 211


>gi|269960762|ref|ZP_06175133.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834426|gb|EEZ88514.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 238

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 10/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D+ETTGLDS+ D I+ IG V++ +      T Q     +  +  PE   ++ IT + 
Sbjct: 52  IVLDLETTGLDSEEDLILSIGWVDIANGKVDLATSQHMYINSDSQIKPETAVINHITPQM 111

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L +  S       F  F   +    +AH    +  FIN  L R+ K    P   +DT+ I
Sbjct: 112 LSEGVSIHDAMRAF--FHAAKGKILVAHACVVETQFINQYLHRVFKLSEPPLVWLDTMCI 169

Query: 130 AR--RKHPSSRND----LNSLCKRYGITISHRSKHGALLDS 164
            +  +K  + R++    L+    RYG  +   + H AL D+
Sbjct: 170 EKHLQKAINPRDEIDVTLSGTRARYG--LPEYNGHNALADA 208


>gi|242242736|ref|ZP_04797181.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis W23144]
 gi|242233872|gb|EES36184.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis W23144]
          Length = 902

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +     +  P    L  I +E
Sbjct: 8   VVDLETTGNQLDYDEIIQIG----ITFVRQNQVIDTYHSMIRTDLEIPPFIQALTSIEEE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ +  + +     ++  ++AHN  FD+ FI    ++ N     P R++DTL 
Sbjct: 64  MLVQAPYFNEVADDIYQLI--KDCVFVAHNISFDLNFIKKAFEKCNI-QFKPKRVMDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           + +   P+ ++  L++L + + I +  +HR+   A   + L+
Sbjct: 121 LFKIAFPTDKSYQLSALAESHHIPLNNAHRADEDATTTAKLM 162


>gi|148653458|ref|YP_001280551.1| ribonuclease T [Psychrobacter sp. PRwf-1]
 gi|148572542|gb|ABQ94601.1| RNAse T [Psychrobacter sp. PRwf-1]
          Length = 274

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 20/191 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL--DYSK--TNRTFQVFLCP-NGRKNSP 57
           R  K   +V D+ET G ++  D ++EI  + ++  D  K          L P  G     
Sbjct: 56  RFRKFLPVVVDVETAGFNAATDALLEIACIPIVMDDEGKFVPGEPLSAHLNPFEGANLEQ 115

Query: 58  EALKLHGITDE-------FLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFIN 107
            AL   GI            +++P+   IF E      + +      + HNA FD+ F+N
Sbjct: 116 RALDFTGIDPNNPMRKAIAEEEQPALRRIFKELKAVRKDNDCLKCILVGHNAHFDLSFLN 175

Query: 108 AELQRINK---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A ++R N    +P     ++DT++++       +  L   C+  GI       H AL D+
Sbjct: 176 AAIERTNSKNHNPFHQFSVLDTVTLSALAF--GQTVLARACRAAGIEFDGSEAHSALYDT 233

Query: 165 HLLSDVYIKMM 175
              ++++ K++
Sbjct: 234 QKTAELFCKIL 244


>gi|327440746|dbj|BAK17111.1| Rad3-related DNA helicase [Solibacillus silvestris StLB046]
          Length = 926

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 4   KNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK- 61
           K   +  + DIETTG   +  DR+I+I A+ ++   +  + +  F+ P   K  P  ++ 
Sbjct: 2   KESQKYAIVDIETTGHSPASGDRMIQI-AIVIMQGWEIVKKYSTFINPG--KPIPLFIQD 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +KD   F +     ++    + A ++AHN  FD+ F+ AE  R         
Sbjct: 59  LTNITDEDVKDALPFEAYADYIYELL--EGAVFVAHNTDFDLNFLQAEFNRAGLSKWHGK 116

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKMM 175
           + IDT+ + +   P S +  L+ L   + I +  +HR+   AL  ++LL   + +++
Sbjct: 117 K-IDTVELTKILFPMSLSYKLSDLANDFNILLQSAHRADDDALATAYLLKHCWEELL 172


>gi|312887472|ref|ZP_07747071.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM
           18603]
 gi|311300112|gb|EFQ77182.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM
           18603]
          Length = 456

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 9/167 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG  +    I EI  +    ++ TNR F+  + P G         L GI ++ +
Sbjct: 4   IVDIETTGGHASAHGITEIAIIIHDGHTITNR-FETLINP-GMLIPMHIQVLTGIDNDMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K+ P FSSI    ++    +   ++AHN  FD  F+   L     D   P   + T+ + 
Sbjct: 62  KNAPPFSSIAQHVYEIL--EPCTFVAHNVNFDYSFVKHHLMASGYDLQSPK--LCTVRLG 117

Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           R+  P      L   C   GI  S R  H A+ D+   + ++  M++
Sbjct: 118 RKIFPGLPSYSLGKFCGHMGIDNSAR--HRAMGDADATAKLFSMMLL 162


>gi|283954255|ref|ZP_06371779.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794273|gb|EFC33018.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 253

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 76/145 (52%), Gaps = 9/145 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           + DIE+TG  SK + I+EIGAV++ +  +  R FQ F+     K  PE + +L GIT E 
Sbjct: 74  IVDIESTGGVSKGE-ILEIGAVKIQNSKEIGR-FQSFI---KVKEIPENITELTGITYEM 128

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ P  + + S+F  F   +++ ++AHN +FD  FI+  L       L   RI  T+  
Sbjct: 129 VENAPILAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 185

Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154
           A+    S +  L  L +   I  +H
Sbjct: 186 AQCCIESPKYKLEVLKELLSIENTH 210


>gi|226308478|ref|YP_002768438.1| exonuclease [Rhodococcus erythropolis PR4]
 gi|226187595|dbj|BAH35699.1| putative exonuclease [Rhodococcus erythropolis PR4]
          Length = 241

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             FD+ETTG D    RI+    V ++D S  N   + +L   G     +A  +HGI+ E+
Sbjct: 25  CAFDLETTGRDPSTARIVS-ACVAVIDGS--NVETRTWLLDPGVDIPADASAIHGISTEY 81

Query: 70  -LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             +   +++  + E  D  +   A     +A NA +D+  ++AE  RI K    P  +ID
Sbjct: 82  AARHGQNYAEGYEEIRDALHNSWARDHAVVAFNASYDLTVMHAEGLRIGKPAFVPGLVID 141

Query: 126 TLSIARRKHP--SSRNDLNSLCKRYGITI 152
              I R        +  L ++C+ YGI++
Sbjct: 142 PYVIDRAMDTFRKGKRTLAAVCEHYGISL 170


>gi|320547177|ref|ZP_08041471.1| DNA polymerase III [Streptococcus equinus ATCC 9812]
 gi|320448164|gb|EFW88913.1| DNA polymerase III [Streptococcus equinus ATCC 9812]
          Length = 827

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 89/175 (50%), Gaps = 10/175 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++ N  +  V D+E TG  +  + II++G V +++  K  +T+Q  + P+    +   +
Sbjct: 1   MMQVNSQKYAVVDLEATGAHAMAE-IIQVGIV-IIENKKIVKTYQTDVNPH-EPLTEHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITDE L   P FS +  + ++  +  +  ++AHN KFD   +  +L     +   P
Sbjct: 58  NLTGITDEQLAKAPDFSQVAQKIYNMIS--DCVFVAHNVKFDANLLAEKLFLEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             ++DT+ +++  +P+  +  L  L     + ++    H A+ D++  + + +K+
Sbjct: 116 --LVDTVELSQVFYPTLEKYTLGHLADVLQLDLT--DAHTAISDAYATAQLLLKL 166


>gi|269796146|ref|YP_003315601.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
 gi|269098331|gb|ACZ22767.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
          Length = 241

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 84/205 (40%), Gaps = 25/205 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+D   DRI+    V     +   RT   +L   G    PEA  +HGIT E  +
Sbjct: 11  FDTETTGVDVSEDRIVSAALVRRHVGTTEVRT---WLLDPGVPIPPEASSIHGITTEVAR 67

Query: 72  DK-----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP------ 120
            +      +   I  E     +E     +A NA FD+  + AEL+R     L+       
Sbjct: 68  AEGQDPAGALDEIAKEIAAALSE-GIPVVAFNATFDLCILQAELRRYGLQTLEERTGAEV 126

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           + +ID L + R   ++   +  L  LC  YGI       H A +D     DV   M+   
Sbjct: 127 APVIDPLVLDRAVDRYRRGKRKLVDLCGVYGIE-GDGELHTADVDVLATLDVLGAMVTQY 185

Query: 179 SQIN-------FGFKTNEDRFFKEE 196
            +I         G++  E R + E+
Sbjct: 186 PEIGARTLQDLHGYQATEHRRWAED 210


>gi|254291880|ref|ZP_04962663.1| ribonuclease T [Vibrio cholerae AM-19226]
 gi|150422240|gb|EDN14204.1| ribonuclease T [Vibrio cholerae AM-19226]
          Length = 224

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D +       T    + P  G      AL+  G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 80  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++       +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|229505395|ref|ZP_04394905.1| ribonuclease T [Vibrio cholerae BX 330286]
 gi|229510935|ref|ZP_04400414.1| ribonuclease T [Vibrio cholerae B33]
 gi|229512432|ref|ZP_04401905.1| ribonuclease T [Vibrio cholerae TMA 21]
 gi|229518056|ref|ZP_04407500.1| ribonuclease T [Vibrio cholerae RC9]
 gi|229529900|ref|ZP_04419290.1| ribonuclease T [Vibrio cholerae 12129(1)]
 gi|229608414|ref|YP_002879062.1| ribonuclease T [Vibrio cholerae MJ-1236]
 gi|255744788|ref|ZP_05418739.1| ribonuclease T [Vibrio cholera CIRS 101]
 gi|262151277|ref|ZP_06028413.1| ribonuclease T [Vibrio cholerae INDRE 91/1]
 gi|262167159|ref|ZP_06034872.1| ribonuclease T [Vibrio cholerae RC27]
 gi|14548237|sp|Q9KT97|RNT_VIBCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|229333674|gb|EEN99160.1| ribonuclease T [Vibrio cholerae 12129(1)]
 gi|229344771|gb|EEO09745.1| ribonuclease T [Vibrio cholerae RC9]
 gi|229350513|gb|EEO15460.1| ribonuclease T [Vibrio cholerae TMA 21]
 gi|229350900|gb|EEO15841.1| ribonuclease T [Vibrio cholerae B33]
 gi|229357618|gb|EEO22535.1| ribonuclease T [Vibrio cholerae BX 330286]
 gi|229371069|gb|ACQ61492.1| ribonuclease T [Vibrio cholerae MJ-1236]
 gi|255737819|gb|EET93213.1| ribonuclease T [Vibrio cholera CIRS 101]
 gi|262024380|gb|EEY43068.1| ribonuclease T [Vibrio cholerae RC27]
 gi|262030968|gb|EEY49596.1| ribonuclease T [Vibrio cholerae INDRE 91/1]
          Length = 224

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D +       T    + P  G      AL+  G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 80  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++       +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|220913226|ref|YP_002488535.1| DNA polymerase III subunit epsilon [Arthrobacter chlorophenolicus
           A6]
 gi|219860104|gb|ACL40446.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
          Length = 236

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 90/193 (46%), Gaps = 20/193 (10%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N + +  FD+ETTG +S+  RI+   +V ++D+         +L   G +   EA  +HG
Sbjct: 5   NTLPRAAFDLETTGRNSRAARIV-TASVTVVDHRGEVIREHEWLADPGVEIPTEASDVHG 63

Query: 65  ITDEFLK--DKPS------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           +T E  +   +P+       +++  E +D         IA NA +D   + AE  R    
Sbjct: 64  VTTEQARKDGRPAHEVTRELAAVLQELFD----TGVPVIAFNASYDFTVLAAESARYGVP 119

Query: 117 PLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDV-- 170
            L    ++D   + ++  ++   +  L +LC+ YG+ +  +H S   AL    +L  +  
Sbjct: 120 QLTRFPVLDPYIMNKQVDRYRKGKRTLTALCEEYGVVLDNAHTSAADALATLKVLDAMAG 179

Query: 171 -YIKMMVGGSQIN 182
            + K+M+  SQ++
Sbjct: 180 KFPKLMMPASQLH 192


>gi|81428523|ref|YP_395523.1| ATP-dependent helicase [Lactobacillus sakei subsp. sakei 23K]
 gi|78610165|emb|CAI55214.1| Putative ATP-dependent helicase, DinG family [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 944

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 17/170 (10%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG + K+ DRII+ G   L+   K  +T    + P   ++ P  ++ L  IT +
Sbjct: 9   VVDLETTGTNIKDGDRIIQFGCA-LVQNGKIIQTISQDVNP--LRDVPTKIQHLTHITAD 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  +     +  +     ++AHN  FD+ F+N EL R+   PLD +  IDT+ 
Sbjct: 66  QLELAPIFEDLAPTLVEILS--GTVFVAHNINFDLPFLNGELTRVGLQPLDLAG-IDTVE 122

Query: 129 IAR---RKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +A+    + PS R  DL  L     + I H + H A  D+ + + +++K+
Sbjct: 123 LAQIILPEAPSYRLQDLTQL-----LEIEHDNPHQADSDALVTAKLFLKL 167


>gi|313843978|ref|YP_004061641.1| hypothetical protein OlV1_008c [Ostreococcus lucimarinus virus
           OlV1]
 gi|312599363|gb|ADQ91385.1| hypothetical protein OlV1_008c [Ostreococcus lucimarinus virus
           OlV1]
          Length = 447

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 18/143 (12%)

Query: 7   MRKIVFDIETTGL---------------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
           M  I FD ET+GL               +    R + + A       +  +TF   + P+
Sbjct: 5   MNYIAFDFETSGLPRGRRNTKVTHETLSNFDGCRAVSLSAARFSQRGRLIKTFDAIIRPD 64

Query: 52  GRKNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           G +   E++ +HGI++E  L +   F  ++ +F +F   +    +AHNA+FD   + +E+
Sbjct: 65  GFQIGEESIAIHGISNEKALSEGRPFPEVYRDFMEFIGPRTKTLVAHNAQFDTSVLQSEM 124

Query: 111 QR--INKDPLDPSRIIDTLSIAR 131
            R  I  + +D   I  TL + R
Sbjct: 125 LRHGIPLEQIDDLVIRCTLEMYR 147


>gi|260597773|ref|YP_003210344.1| ribonuclease T [Cronobacter turicensis z3032]
 gi|260216950|emb|CBA30569.1| Ribonuclease T [Cronobacter turicensis z3032]
          Length = 223

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAVTLKMDADGWLTPDETLHFHVEPFEGAILQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        E N   A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCNRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLAKACIAAGMPFDSAQAHSALYDTEQTALLFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|149188401|ref|ZP_01866694.1| DNA polymerase III, epsilon subunit [Vibrio shilonii AK1]
 gi|148837619|gb|EDL54563.1| DNA polymerase III, epsilon subunit [Vibrio shilonii AK1]
          Length = 197

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 16/180 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFL-CPNGRKNSPEA 59
           +   ++  +V D ETTGLD+  + I+ +G VE+ +++       Q+F+  PN  K   E 
Sbjct: 3   VLATEVEYLVLDFETTGLDANTNTILSLGWVEIANFTVNVASAKQLFIESPNEVK--AET 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPL 118
             ++ I  E L+D  S  S  ++   F   +N   IAH +  +  F++  L Q+     L
Sbjct: 61  AVINHIMPEMLQDGISLDSAMTQL--FQAAKNKILIAHGSMIEAAFVDEYLTQKYGVSDL 118

Query: 119 DPSRIIDTLSIARRKHPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P   +DTL+I +    +   D      L+   KRYG  +   + H AL+D+   +++++
Sbjct: 119 -PVMWLDTLAIEKSMALAVNKDAEIDVRLSETRKRYG--LPEYNGHEALIDAIATAELFL 175


>gi|315925789|ref|ZP_07921996.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315620898|gb|EFV00872.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 158

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 10/112 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDE 68
           +V D+ET GLD+  +RIIEIGAV++    +T  TF Q+ + P+  +   +     GITD 
Sbjct: 49  VVIDLETDGLDAAKNRIIEIGAVKV--DGQTVSTFEQLIVHPH--RLPKKITDPTGITDT 104

Query: 69  FLKD--KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            L D  +P   +I   F  F    +   I ++  FDV FIN  L R++ +PL
Sbjct: 105 LLADGGRPEAEAI-KAFLAFIGSDD--LIRYHVDFDVQFINQTLHRMDIEPL 153


>gi|147675730|ref|YP_001216478.1| ribonuclease T [Vibrio cholerae O395]
 gi|153216049|ref|ZP_01950254.1| ribonuclease T [Vibrio cholerae 1587]
 gi|153826220|ref|ZP_01978887.1| ribonuclease T [Vibrio cholerae MZO-2]
 gi|124114499|gb|EAY33319.1| ribonuclease T [Vibrio cholerae 1587]
 gi|146317613|gb|ABQ22152.1| ribonuclease T [Vibrio cholerae O395]
 gi|149740080|gb|EDM54249.1| ribonuclease T [Vibrio cholerae MZO-2]
 gi|227012823|gb|ACP09033.1| ribonuclease T [Vibrio cholerae O395]
          Length = 243

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D +       T    + P  G      AL+  G
Sbjct: 39  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 99  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++       +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 159 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 216

Query: 174 MM 175
           ++
Sbjct: 217 IV 218


>gi|187932764|ref|YP_001885887.1| exonuclease [Clostridium botulinum B str. Eklund 17B]
 gi|187720917|gb|ACD22138.1| putative exonuclease [Clostridium botulinum B str. Eklund 17B]
          Length = 974

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 16/158 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK--LHGITD 67
           I  DIETTGLD  N  IIEIGAV++ + + T  T++V + P  ++N P ++     G+ +
Sbjct: 12  IYLDIETTGLDENNCEIIEIGAVKIKNSNVT--TYEVLIRP--KRNVPISIYKLCQGLKE 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L +      I +E   F   ++   I HN  F+  F++  +  I  +  D   +   L
Sbjct: 68  EELMNSKYLEDIKNELLVFL--EDLPLICHNGGFERKFLSCHIPEIKNEIFDSMELSAIL 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK-HGALLDS 164
              R+++     +L+SL K   ITI  + + H  L DS
Sbjct: 126 EPWRKEY-----NLDSLIK--SITILDKDEFHRGLEDS 156


>gi|156934185|ref|YP_001438101.1| ribonuclease T [Cronobacter sakazakii ATCC BAA-894]
 gi|166228564|sp|A7MFC6|RNT_ENTS8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|156532439|gb|ABU77265.1| hypothetical protein ESA_02012 [Cronobacter sakazakii ATCC BAA-894]
          Length = 223

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAVTLKMDADGWLTPDETLHFHVEPFEGAILQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        E N   A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCNRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLAKACIAAGMPFDSTQAHSALYDTEQTALLFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|330981566|gb|EGH79669.1| ribonuclease T [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 193

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV + +D   +     T+   + P  G      AL+  G
Sbjct: 1   MVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 60

Query: 65  I-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114
           I  D  L+    ++ + + IF              A  + HNA FD+GF+NA + R++  
Sbjct: 61  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 120

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  +
Sbjct: 121 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 178

Query: 175 M 175
           +
Sbjct: 179 V 179


>gi|301026596|ref|ZP_07190019.1| exonuclease [Escherichia coli MS 69-1]
 gi|300395429|gb|EFJ78967.1| exonuclease [Escherichia coli MS 69-1]
          Length = 220

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I++I +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVDIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|225849248|ref|YP_002729412.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643190|gb|ACN98240.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 204

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 21/176 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-----FQVFLCPNGRKNSPEALKLHG 64
           +VFD ETTGL+ K D I+ IGAV++    K NR      F   + P  R+ + E +K+HG
Sbjct: 35  VVFDTETTGLNPKTDDILSIGAVKI----KQNRILLNDRFYTVVKPE-REINEETIKIHG 89

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +  + L++         +F  F   +    + +   FDV  IN   ++I   PL P++ I
Sbjct: 90  LRKKDLENGIPIEKAIKDFLRFIGSR--PLVGYYIDFDVAMINKYTKKIIGIPL-PNKKI 146

Query: 125 DTLSIARRKH----PSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +   +         P    DL  +S+ K  G+ I    KH AL D+ +   +++K+
Sbjct: 147 EVSGMYYDYKIGTIPQGFVDLRFDSILK--GLKIPSFGKHDALNDAIMTGLIFLKL 200


>gi|156743855|ref|YP_001433984.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM
           13941]
 gi|156235183|gb|ABU59966.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM
           13941]
          Length = 232

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 9/124 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNSPEALKLHGITD 67
           V D+ETTGL+ + D ++ IG VE +D  +     R + +   P+    +PE++++HG+  
Sbjct: 37  VMDVETTGLNPRRDALLAIGLVE-IDEGRIRMDRRWYTLVHPPDDAPINPESIRIHGLLP 95

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDT 126
           + ++  P   ++  +       +    + H A  D+GF+   ++R+   DP  P+  IDT
Sbjct: 96  QDVEHAPPLDAVVPDVLRRLTGRV--LVVHVADVDIGFLRQAMRRLYGVDPRGPA--IDT 151

Query: 127 LSIA 130
             +A
Sbjct: 152 ARLA 155


>gi|294628378|ref|ZP_06706938.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
 gi|292831711|gb|EFF90060.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
          Length = 242

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 13/152 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D + DRI+   AV + D   T      +L   G     EA  +HG+T+E L
Sbjct: 12  AFDTETTGVDVETDRIVS-AAVVVQDAPGTRPRVSRWLVNPGVPVPREATAVHGLTEERL 70

Query: 71  KDKPSF-SSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLD------P 120
           +    + + +  E  +   EQ A     +  NA FD+  ++ EL+R     L+      P
Sbjct: 71  QRTGRWPAPVMYEIAEQLAEQAARGRPLVVMNAPFDLTLLDRELRRHRASSLERWFEGSP 130

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGI 150
            R++D   + +   ++   R  L  LC  Y +
Sbjct: 131 LRVLDPRVLDKHLDRYRKGRRTLTDLCAHYEV 162


>gi|145595801|ref|YP_001160098.1| hypothetical protein Strop_3286 [Salinispora tropica CNB-440]
 gi|145305138|gb|ABP55720.1| DNA polymerase III, epsilon subunit [Salinispora tropica CNB-440]
          Length = 607

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 15/180 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG       I EIGAV++    +        + P G    P    L GIT   
Sbjct: 55  VVVDLETTGGTPDGGGITEIGAVKVRGGEQLG-VLATLVNP-GTPVPPFVTVLTGITQSM 112

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P  + +   F +F    +A  +AHNA +DVGF+ A           P R++DT ++
Sbjct: 113 LLPAPPITEVLPSFLEFL-PPDAVLVAHNAPYDVGFLKAACAAHGYRWPSP-RVLDTAAL 170

Query: 130 ARRKHPSSRNDLNSLCKRYGITISH-----RSKHGALLDSHLLSDVYIKMM--VGGSQIN 182
           ARR    +R+++ +  +R G   ++     R  H AL D+    DV   ++  +GG +++
Sbjct: 171 ARRV--LTRDEVPN--RRLGTLAAYFRTATRPTHRALDDALATVDVLHGLISRLGGHRVH 226


>gi|15641021|ref|NP_230652.1| ribonuclease T [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|227081180|ref|YP_002809731.1| ribonuclease T [Vibrio cholerae M66-2]
 gi|254848136|ref|ZP_05237486.1| ribonuclease T [Vibrio cholerae MO10]
 gi|298498880|ref|ZP_07008687.1| ribonuclease T [Vibrio cholerae MAK 757]
 gi|9655469|gb|AAF94167.1| ribonuclease T [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|227009068|gb|ACP05280.1| ribonuclease T [Vibrio cholerae M66-2]
 gi|254843841|gb|EET22255.1| ribonuclease T [Vibrio cholerae MO10]
 gi|297543213|gb|EFH79263.1| ribonuclease T [Vibrio cholerae MAK 757]
          Length = 243

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D +       T    + P  G      AL+  G
Sbjct: 39  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 99  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++       +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 159 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 216

Query: 174 MM 175
           ++
Sbjct: 217 IV 218


>gi|297578613|ref|ZP_06940541.1| ribonuclease T [Vibrio cholerae RC385]
 gi|297536207|gb|EFH75040.1| ribonuclease T [Vibrio cholerae RC385]
          Length = 249

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D +       T    + P  G      AL+  G
Sbjct: 39  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 99  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++       +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 159 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 216

Query: 174 MM 175
           ++
Sbjct: 217 IV 218


>gi|153823922|ref|ZP_01976589.1| ribonuclease T [Vibrio cholerae B33]
 gi|126518562|gb|EAZ75785.1| ribonuclease T [Vibrio cholerae B33]
          Length = 227

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D +       T    + P  G      AL+  G
Sbjct: 23  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 82

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 83  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 142

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++       +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 143 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 200

Query: 174 MM 175
           ++
Sbjct: 201 IV 202


>gi|116873334|ref|YP_850115.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742212|emb|CAK21336.1| ATP-dependent helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 928

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 11/165 (6%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R IV D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  ++ L GI
Sbjct: 5   RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYSTFLNPE--KPIPAFIQELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             + +K+ P F  +          ++  ++AHN  FD  F+  E+ R     L   + +D
Sbjct: 62  APKDVKNAPLFEDVAPIIASLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           T+ +AR  +P      L  L   +G  + H   H A  D+ + +D
Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 161


>gi|121728127|ref|ZP_01681163.1| ribonuclease T [Vibrio cholerae V52]
 gi|121629595|gb|EAX62017.1| ribonuclease T [Vibrio cholerae V52]
          Length = 212

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D +       T    + P  G      AL+  G
Sbjct: 8   VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 67

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 68  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 127

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++       +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 128 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 185

Query: 174 MM 175
           ++
Sbjct: 186 IV 187


>gi|229523203|ref|ZP_04412610.1| ribonuclease T [Vibrio cholerae TM 11079-80]
 gi|229339566|gb|EEO04581.1| ribonuclease T [Vibrio cholerae TM 11079-80]
          Length = 224

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D +       T    + P  G      AL+  G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTVHFHVEPFEGANLEKAALEFTG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 80  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++       +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|170739960|ref|YP_001768615.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
 gi|168194234|gb|ACA16181.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 186

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 10/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR +  D ET   + + D    +G   + D     R  ++   P+ R  SP  +++HGI 
Sbjct: 1   MRTLAIDFETA--NERRDSACAVGLAWIEDGRVVRREARLIRPPDLR-FSPFNIRVHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E + D   F    + F        A  +AHNA FDVG + A L      P      + T
Sbjct: 58  PEDVADAKPFGEAMAPFLPEI--AGALVLAHNASFDVGVLCAALAACGL-PRPRFTSLCT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +ARR+ P  +R  L  L +R GI + H   H A  D+   + + +  M
Sbjct: 115 VQLARRQWPGEARYRLPILAERLGIPLRH---HDAGEDAFACAQIALAAM 161


>gi|72161118|ref|YP_288775.1| exonuclease [Thermobifida fusca YX]
 gi|71914850|gb|AAZ54752.1| exonuclease [Thermobifida fusca YX]
          Length = 516

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 30/182 (16%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKLHGITDE 68
           V D+ETTGL+ K   R+ EI  V +         +   + P    +NS      HGITD 
Sbjct: 23  VLDLETTGLNPKRGARVCEIAVVRMRGDGTVLDEYSTLVNPGSSIRNS----AFHGITDT 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           ++K  PSF  +  +   + +   A  + H   F+  F+ AE  R+   PL     + TL 
Sbjct: 79  WVKTAPSFDQVAGDLLAYLD--GAIVVGHKLDFEEKFLAAEFARLGV-PLTGIPGLCTLV 135

Query: 129 IARRKHPSSRNDLNSLCKRYGITISH----------RSKHGALLDSHLLSDVYIKMMVGG 178
            AR +             RYG  ++H           ++H AL D+  L+ V  +++   
Sbjct: 136 AARYQ-----------LDRYGYRLAHLHHLLTGRWPTAEHSALGDARSLAAVLTELINAA 184

Query: 179 SQ 180
            Q
Sbjct: 185 PQ 186


>gi|268609211|ref|ZP_06142938.1| exonuclease [Ruminococcus flavefaciens FD-1]
          Length = 179

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 21/181 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA------LK 61
           R IVFD+ET      N+ +  IG   + D    +  F +          PE       ++
Sbjct: 3   RYIVFDVETPNF--ANNHMSAIGITVVEDGRIADSFFSLV--------DPETHFDHFNIR 52

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GI  + ++  P+F+ ++ +     N  +   +AHNA FD+  +   L     +    +
Sbjct: 53  LTGIDPKKVQGAPNFAQLWQKIEPIMN--SGILVAHNAVFDMSVLKKCLSAYGIEWKSTA 110

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           + + T+   R+  P   + LN +C  YGI++ H   H A  DS   +++ ++ +  G+ +
Sbjct: 111 KYLCTVQAGRKLLPGRGHKLNEMCDYYGISLDH---HQADSDSRACAEILLRYIESGADV 167

Query: 182 N 182
           N
Sbjct: 168 N 168


>gi|119472859|ref|ZP_01614766.1| ribonuclease T [Alteromonadales bacterium TW-7]
 gi|119444691|gb|EAW25998.1| ribonuclease T [Alteromonadales bacterium TW-7]
          Length = 227

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 26/212 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G + + D ++EI AV +L          ++T    + P  G      A++ +
Sbjct: 19  VVIDVETAGFNKETDALLEI-AVSVLKMDDDGLLSIDQTVHFHVEPFEGANIEQAAIEFN 77

Query: 64  GITDEF--LKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQR-- 112
           GI D F  L+   +      E      +       Q +  +AHNA FD GF+NA ++R  
Sbjct: 78  GI-DPFSPLRGAVAEEEAIKEICKVVRKAQKAAGCQRSVIVAHNAAFDHGFLNAAIERNN 136

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I + P  P    DT ++A       +  L   C+  GI   +   H AL D+   +++Y 
Sbjct: 137 IKRTPFHPFVSFDTTTLAGLA--LGQTVLAKACRAAGIEFDNSQAHSALYDTERTAELYC 194

Query: 173 KMM-----VGGSQINFGFKTNEDRFFKEEKKT 199
            ++     +GG  +    ++ +D   KE K T
Sbjct: 195 LIVNRWQELGGWPLAPLDESGDDEAAKEPKTT 226


>gi|152995559|ref|YP_001340394.1| ribonuclease T [Marinomonas sp. MWYL1]
 gi|150836483|gb|ABR70459.1| ribonuclease T [Marinomonas sp. MWYL1]
          Length = 222

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + K D ++E+ A  L +D +     + T    + P  G      AL   G
Sbjct: 16  VVIDVETAGFNQKTDALLEMAASILRMDENGDLYIHETLDFLIKPFEGANLEKAALDFTG 75

Query: 65  ITDEFL---KDKPSFSSIFSEFWDFFNE------QNAEWIAHNAKFDVGFINAELQR--I 113
           I D F    +D P   ++   F     E      + A  + HNA FD GF+NA ++R  I
Sbjct: 76  I-DPFAPGRQDMPETEALNQMFSKVRKELKSVGCKRAILVGHNAAFDHGFLNAAIERADI 134

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT S+A       +  L   C+   I  S+   H A  D+   ++++ +
Sbjct: 135 KRNPFHPFSSFDTASLAGLVF--GQTVLAKACEAASIPFSNSEAHSAKYDTEKTAELFCE 192

Query: 174 MM 175
           M+
Sbjct: 193 MV 194


>gi|46446795|ref|YP_008160.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400436|emb|CAF23885.1| putative DNA polymerase III, epsilon chain, mutD [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 216

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 10/152 (6%)

Query: 26  IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85
           +IEI A + +     NR F+ F+ P G    PE+  +H ITDE + +  SF+ + +EF +
Sbjct: 1   MIEIAAYDPVQ----NRRFEKFVHP-GFPIPPESTAIHHITDEMVANAGSFADVGAEFVE 55

Query: 86  FFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSIARR-KHPSSRNDLNS 143
           F   +    IAHN   FD+ F+  E +R         + +D+L  ARR +    R+ L  
Sbjct: 56  FCAGE-VVLIAHNNDNFDLHFLRHEFERNQLILPTHWKFLDSLKWARRYRSDLPRHTLQF 114

Query: 144 LCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L + YGIT +  + H AL D  +L  V+  M+
Sbjct: 115 LREIYGITAN--NAHRALDDVIVLERVFRSMV 144


>gi|332638894|ref|ZP_08417757.1| helicase [Weissella cibaria KACC 11862]
          Length = 940

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETT   S+  RII+I AV  +   K    F   + P G +     ++L GIT   +
Sbjct: 9   VVDLETTRTTSETGRIIQI-AVAFVQNKKIINQFSTLVNP-GEQIPRNIIQLTGITQNMV 66

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K  P F  +          Q   ++AHN  FD+ F+NAE +R+    L  S  +DT+ ++
Sbjct: 67  KGAPFFEDVAMTLHAML--QGTIFVAHNVNFDLPFLNAEFERVGLTALK-STALDTVPLS 123

Query: 131 RRKHPSS 137
           +   P++
Sbjct: 124 QILWPTA 130


>gi|256832848|ref|YP_003161575.1| DNA polymerase III, epsilon subunit [Jonesia denitrificans DSM
           20603]
 gi|256686379|gb|ACV09272.1| DNA polymerase III, epsilon subunit [Jonesia denitrificans DSM
           20603]
          Length = 298

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 5/141 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL S+NDR+IE+  V    +      ++  + P   + +  A  +H I    +
Sbjct: 6   VIDVETTGLSSRNDRVIELAVVHTDTHGTITGHWETLINP---QRNLTAQHIHHIHASHI 62

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F+ I ++     + +    +AHNA FD  F+ AEL R  K        + T++++
Sbjct: 63  QHAPLFADIATDLLTLLDGRVP--VAHNAPFDARFLAAELHRTGKTLHQQHDFLCTMNLS 120

Query: 131 RRKHPSSRNDLNSLCKRYGIT 151
           RR  P     L        IT
Sbjct: 121 RRYLPGVGKPLADCLAATNIT 141


>gi|119775228|ref|YP_927968.1| ribonuclease T [Shewanella amazonensis SB2B]
 gi|119767728|gb|ABM00299.1| RNAse T [Shewanella amazonensis SB2B]
          Length = 258

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G +++ D ++EI AV LL          ++T    + P  G    P AL  +
Sbjct: 40  VVIDVETAGFNAQTDALLEI-AVTLLTMDDNGMLALDKTLHFHIEPFEGANLEPAALAFN 98

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--I 113
           GI         + +K +   IF          +   A  +AHNA FD GF+   + R  +
Sbjct: 99  GIDPSNPLRGAVSEKEAMLEIFKAVRKGMKAADCHRAVIVAHNAAFDHGFVTKAIDRSGV 158

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT  ++          L   CK  GI   ++  H AL D+   ++++  
Sbjct: 159 KRSPFHPFATFDTACLSGLA--LGHTVLAQACKIAGIPFDNKEAHSALYDTERTAELFCY 216

Query: 174 MM 175
           ++
Sbjct: 217 IV 218


>gi|145299434|ref|YP_001142275.1| ribonuclease T [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142852206|gb|ABO90527.1| ribonuclease T [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 223

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A  L +D   +   ++ F   + P  G      AL+  G
Sbjct: 18  VVIDVETAGFNARTDALLEIAAYTLKMDEDGWLAPDQVFHFHVEPFEGANLEKAALEFTG 77

Query: 65  ITDEF------LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--I 113
           I D F      + +K + + IF        E +   A  +AHNA FD GF+ A  +R  +
Sbjct: 78  I-DPFNPLRGAVSEKEALTEIFKGIRKGMKESDCNRAIIVAHNATFDHGFVMAAAERAGL 136

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C+   I   ++  H AL D+   ++++  
Sbjct: 137 KRNPFHPFATFDTAALSGLA--LGQTVLAKACQSARIPFDNKEAHSALYDTERTTELFCH 194

Query: 174 MM 175
           ++
Sbjct: 195 IV 196


>gi|327405996|ref|YP_004346834.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823]
 gi|327321504|gb|AEA45996.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM
           16823]
          Length = 458

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 11/166 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65
           M   + DIETTG  +K+ +I EI A+   D  K   +F   + P      PE + +L GI
Sbjct: 1   MNYAIVDIETTGGSTKSSKITEI-AIYKHDGMKIIDSFDTLVNP--EMPIPEFISRLTGI 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+ +++ P F  I  +  +F   ++  ++AHN  FD G I  E + +  D       + 
Sbjct: 58  HDDMVENAPKFYEIAKQIIEF--TEDCIFVAHNVGFDYGIIRHEFKLLGYDYRKAH--LC 113

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLLS 168
           T+  +R   P   +  L  L K  GI +   HR+K  A   +HL +
Sbjct: 114 TVRASRYVIPDHESYSLGKLTKALGIQLIGRHRAKGDAEATAHLFT 159


>gi|255542840|ref|XP_002512483.1| exonuclease, putative [Ricinus communis]
 gi|223548444|gb|EEF49935.1| exonuclease, putative [Ricinus communis]
          Length = 334

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 18/174 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTG   + +RIIEI   +L  +   N TFQ  + P   +  P +  +HGIT   
Sbjct: 135 IVFDLETTGFSREYERIIEIALQDL--HGGENSTFQTLINPG--RIVPNS-HIHGITTHM 189

Query: 70  LKDK--PSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121
           +     P    +      +   +         +AHN + FDV F+  E +R   D     
Sbjct: 190 VCKPHVPRMEDLIPILLQYIRSRQKPGGYVLLVAHNGRSFDVPFLINEFKRSGVDVPCNW 249

Query: 122 RIIDTLSIARRKHPSS----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +DTL +AR+   S      + L  L + +GI +   S H A+ D  LL+ ++
Sbjct: 250 LFMDTLPLARKWMKSKGLKISSSLQGLREAFGIKLEG-SAHRAMSDVRLLAKLF 302


>gi|90417008|ref|ZP_01224937.1| ribonuclease T [marine gamma proteobacterium HTCC2207]
 gi|90331355|gb|EAS46599.1| ribonuclease T [marine gamma proteobacterium HTCC2207]
          Length = 221

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 23/184 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-----GRKNSPEALKLHG 64
           +V D+ET G +S+ D ++EI AV L   ++ N   +     N     G      AL+  G
Sbjct: 29  VVVDVETGGFNSRTDAMLEIAAVILEMDAQGNIQIKETHSKNIDPFPGAVVEKAALEFTG 88

Query: 65  I-----------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR- 112
           I             E L+D   F  I  E       ++   +AHNA FD+GF+NA + R 
Sbjct: 89  IDIYDPERMPEEEGEALRDI--FRPIRHEISATGCTRSV-MVAHNAHFDLGFVNAAVNRN 145

Query: 113 -INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            I ++P  P    DT ++A   +   +  L   C+   +   +RS H AL D+   ++++
Sbjct: 146 QIKRNPFHPFSCFDTSTLAGLAY--GQTVLAKACQAAKMDFDNRSAHSALYDAVKTAELF 203

Query: 172 IKMM 175
             ++
Sbjct: 204 CGIV 207


>gi|292488168|ref|YP_003531050.1| ribonuclease T [Erwinia amylovora CFBP1430]
 gi|291553597|emb|CBA20642.1| ribonuclease T [Erwinia amylovora CFBP1430]
          Length = 226

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D+K + ++EI AV L +D   + + + T    + P  G     EAL  +G
Sbjct: 22  VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDETLHFNVEPFPGSVLLAEALAFNG 81

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +     A  +AHNA FD+ F+NA  +R  + 
Sbjct: 82  IDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 141

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   G++      H AL D+   +D++ ++
Sbjct: 142 RNPFHPFVTFDTAALSGLVL--GQTVLAKACNAAGMSFDSAQAHSALYDTLQTADLFCEL 199

Query: 175 M 175
           +
Sbjct: 200 V 200


>gi|302533422|ref|ZP_07285764.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
 gi|302442317|gb|EFL14133.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
          Length = 241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 79/186 (42%), Gaps = 23/186 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M R  +     FD ETTG+D + DRI+    V         R+ +  + P G    P A 
Sbjct: 1   MTRWYEGPLAAFDTETTGVDVEQDRIVSAALVVQECAGGRVRSTRWLVNP-GVPVPPGAT 59

Query: 61  KLHGITDEFLKDKPSF-SSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQR---- 112
           ++HG+TDE L+    + + +  E      EQ       +  NA FD+  ++ EL+R    
Sbjct: 60  EVHGLTDEHLQRNGRWPAPVVEEIARALGEQRMAGRPVVVMNAPFDLTLLDRELRRHRAS 119

Query: 113 -----INKDP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
                ++  P   LDP R++D      RK    R  L  LC  YGI +     H A  D+
Sbjct: 120 TLARYLDNRPLTVLDP-RVLDKHLDRYRK---GRRTLTDLCAHYGIELE--GAHDASADA 173

Query: 165 HLLSDV 170
               +V
Sbjct: 174 QAALEV 179


>gi|182435215|ref|YP_001822934.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326775853|ref|ZP_08235118.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
           griseus XylebKG-1]
 gi|178463731|dbj|BAG18251.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326656186|gb|EGE41032.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
           griseus XylebKG-1]
          Length = 236

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 13/155 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI-TDE 68
           + FD+ETTG D +NDRI+    V  LD   T    + +L   G     +A  +HGI TD 
Sbjct: 9   VGFDLETTGTDVENDRIVTAALVR-LDADGTVAEQRTWLLDPGVAIPEQASAIHGIGTDH 67

Query: 69  FLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLD------ 119
             +          E      E        +  NA++D+  ++ E +R     +D      
Sbjct: 68  ARRHGARAVVAVEEIAHAVAEVLRSGVPLVVMNARYDLSLLDRECRRHGLPSVDERVGGE 127

Query: 120 PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
           PS +ID L I +   K+   +  L +LC  YG+ +
Sbjct: 128 PSPVIDPLVIDKHVDKYRKGKRALQALCDHYGVAL 162


>gi|91785922|ref|YP_546874.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666]
 gi|91695147|gb|ABE41976.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666]
          Length = 203

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 11/163 (6%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D ETTGL  +  DR  E+ A+ L++  +    FQ  +  N     P  +  L GIT+ 
Sbjct: 6   VIDFETTGLSPAMGDRATEV-AIVLVEGGRVVDRFQSLM--NAGVRIPAFITSLTGITNA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  +++ ++   F    NA  +AHNA FD  F  AEL R  +    P     T+ 
Sbjct: 63  MVASAPDAATVMTDANRFVG--NAPLVAHNASFDRKFWEAELSRAGERASQP--FACTML 118

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++RR +P +  + L  L   + +  + R+ H AL D+ + + +
Sbjct: 119 VSRRLYPQAPSHKLGVLVDYHHLPKAGRA-HRALADAEMAASL 160


>gi|72161431|ref|YP_289088.1| hypothetical protein Tfu_1027 [Thermobifida fusca YX]
 gi|71915163|gb|AAZ55065.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX]
          Length = 590

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 11/164 (6%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
           G       +IE+GAV L D    +  F   + P+    +   L L GIT   ++  PS +
Sbjct: 57  GTHPATAALIEVGAVRLRDGQVLDE-FTTLVNPHAPVPASITL-LTGITTAMVESAPSPA 114

Query: 78  SIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS 136
           +  S F DF         +AHNA FDV F+ A   R +  P     ++DTL +ARR  P 
Sbjct: 115 AALSAFLDFAGFRPGTVLVAHNAPFDVRFLKAACAR-HGIPWPSPAVLDTLQLARRLVPR 173

Query: 137 S--RND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              RN  L++L + +G   +H   H AL D+   +DV ++ +VG
Sbjct: 174 GEVRNHRLDTLARVFG---AHPPAHRALDDARATADV-LRGLVG 213


>gi|297195480|ref|ZP_06912878.1| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297152819|gb|EFH32011.1| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 21/157 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D + DRI+   AV + D          +L   G    P A+++HG+TD+ L
Sbjct: 11  AFDTETTGVDVEEDRIVS-AAVVVQDSPGGRPRITRWLVNPGVPVPPGAIEVHGLTDDHL 69

Query: 71  KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR---------INKDP 117
           +    + + +  E      EQ A     +  NA FD+  ++ EL+R         +++ P
Sbjct: 70  QRNGRWPAPVMEEIARSLAEQCAAGRPLVVMNAPFDLTLLDRELRRHRASSLSRYLDRSP 129

Query: 118 ---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT 151
              LDP R++D      RK    R  L  LC +Y + 
Sbjct: 130 LCVLDP-RVLDKHLDRYRK---GRRTLTDLCAQYEVV 162


>gi|237732820|ref|ZP_04563301.1| DNA polymerase III subunit epsilon [Mollicutes bacterium D7]
 gi|229384061|gb|EEO34152.1| DNA polymerase III subunit epsilon [Coprobacillus sp. D7]
          Length = 224

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 16/187 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKN---SPEALKLHGI 65
           +VFD+ETTG + K DRIIEIGA+++ +    +R F     P  G K    S +  ++ GI
Sbjct: 42  VVFDLETTGFNKKEDRIIEIGAIKVKNGRVVDR-FSTLCAPIKGGKPMYISAKITEVTGI 100

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRII 124
            +  L ++   S     F  +  E     +AHN  KFD+ F+    +R N +    + I+
Sbjct: 101 KNVDLLNQIPESEAVKNFMCWLGESKIS-VAHNGLKFDIPFLKEACKRSNVE-FKFTHIL 158

Query: 125 DTLSIARRKHPSSRNDL-----NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           DT+ +++  +  +  ++      +L + +G+       H A+ D   L  ++ K+     
Sbjct: 159 DTMLLSKALNYVNNGNIPNNKQETLARYFGV---DYQAHRAVNDCEALLKIFDKLKNDAK 215

Query: 180 QINFGFK 186
            INF  K
Sbjct: 216 NINFSLK 222


>gi|229058278|ref|ZP_04196665.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH603]
 gi|228720049|gb|EEL71635.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH603]
          Length = 934

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+      +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPLFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            ++ +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DEDLVKQAPLFRDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEVHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|323489712|ref|ZP_08094939.1| ATP-dependent helicase dinG [Planococcus donghaensis MPA1U2]
 gi|323396843|gb|EGA89662.1| ATP-dependent helicase dinG [Planococcus donghaensis MPA1U2]
          Length = 920

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N  + +V DIETTG   +K DRII++  V + +   T+ T+  F+ P GR        L 
Sbjct: 2   NTQKYVVVDIETTGHSPAKGDRIIQLAMVTIENGEITD-TYTEFINP-GRTIPLFIQDLT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            ITD  + +  +F       ++    Q+A ++AHN  FD+ F+ AEL+R +  P      
Sbjct: 60  NITDADVAEAKAFEHYAQTVYE--KMQDAIFVAHNTNFDLPFLQAELKR-SGLPKWQGLT 116

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           +DT+ + R  +P++ +  L  +    GI +  +HR+   A+  + L 
Sbjct: 117 MDTVELVRLMYPTAFSFKLQDITSELGIPLESAHRADDDAMATALLF 163


>gi|257439307|ref|ZP_05615062.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
           A2-165]
 gi|257198182|gb|EEU96466.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
           A2-165]
          Length = 244

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 76/140 (54%), Gaps = 17/140 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-------TFQVFL-CPNGRKNSPEALK 61
           + FD ETTGL++++ +IIE+ A+ +    KT R       +  VF+  P G +   + ++
Sbjct: 15  VFFDTETTGLEAESCQIIELAAIRV---EKTERGTLRMADSADVFVKLPEGERIPQKIVE 71

Query: 62  LHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDP-- 117
           L GITDE L+++  + +   + F +  +      +AHNA+FD+ F    L+R  N  P  
Sbjct: 72  LTGITDEQLENEGITEAEAAARFTELISGGRVLLVAHNAQFDLLFTAEMLRRHGNGGPEA 131

Query: 118 LDPSRIIDTLSIA--RRKHP 135
           L  +  +D+L++   RR +P
Sbjct: 132 LKAADYLDSLTVYKDRRAYP 151


>gi|487436|gb|AAA18178.1| DNA polymerase III [Mycoplasma pulmonis]
 gi|1090178|prf||2018296A DNA polymerase III
          Length = 1435

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 6/167 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+DIETTGL    + +I+ GA  ++   +   T   F+ P  + +S    KL GIT E 
Sbjct: 405 VVYDIETTGLSPMLNELIQFGA-SVIKNGRIIETHHFFIKPKSKLDSFTT-KLTGITQEH 462

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+          +    F  +    +AHNA FD  F+  +    N    +    IDTL++
Sbjct: 463 LEKGYELQEALEKISSIFKARIM--VAHNAAFDHNFLKQKFID-NNIEFEEMISIDTLNL 519

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+  +P  R+  L  +  +  +       H A  DS +L++++I  M
Sbjct: 520 AKVLNPIYRSYRLGEVASKLSVVYDPSIAHRADYDSSVLTNIFILQM 566


>gi|291300433|ref|YP_003511711.1| exonuclease RNase T and DNA polymerase III [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569653|gb|ADD42618.1| Exonuclease RNase T and DNA polymerase III [Stackebrandtia
           nassauensis DSM 44728]
          Length = 410

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 12/173 (6%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           VFD ETTG+    + RIIEI  V   D      T+   L P+ R   P+   +HGI    
Sbjct: 4   VFDTETTGIIPGMHHRIIEIAVVLADDEGSIENTWSTLLNPD-RDLGPQ--HIHGIKARQ 60

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLS 128
           + D P F  I  +     + +    +AHN  FD+ F++AE +R+         + + T++
Sbjct: 61  VIDAPKFGDIAGQLIQMLSGRTL--VAHNLPFDLRFLSAEFERLGHQLTYNHHLGVCTMN 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGG 178
            +      +   L   CK  G+ ++    H AL D+   + +   YI    GG
Sbjct: 119 WSTTFLEGASRSLPECCKAAGVQLT--GWHSALSDAEATAALLKHYINAARGG 169


>gi|71281998|ref|YP_270147.1| ribonuclease T [Colwellia psychrerythraea 34H]
 gi|71147738|gb|AAZ28211.1| ribonuclease T [Colwellia psychrerythraea 34H]
          Length = 231

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 26/186 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCP-NGRKNSPEALKL 62
           +V D+ET G +S+ D ++E+ A  L       D+S  + T Q  + P  G    P+AL+ 
Sbjct: 34  VVIDVETAGFNSQTDALLELAASVLHLDEDTGDFS-IDETIQFNIEPFEGANLEPKALEF 92

Query: 63  HGI-----------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            GI            DE LKD      +  +       Q A  +AHNA FD+GF+NA  +
Sbjct: 93  TGIDPTNPLRGAVDEDEALKD---LFKLVRKKMKVAGCQRAIIVAHNAAFDLGFLNAATE 149

Query: 112 R--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           R  I + P       DT ++A       +  L   C    I  ++   H AL D+   ++
Sbjct: 150 RCKIKRSPFHSFVSFDTTTLAGLAL--GQTVLAKACIAAKIDFNNSEAHSALYDTEKTAE 207

Query: 170 VYIKMM 175
           ++  ++
Sbjct: 208 LFCHIV 213


>gi|309803980|ref|ZP_07698062.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus iners
           LactinV 11V1-d]
 gi|308163899|gb|EFO66164.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus iners
           LactinV 11V1-d]
          Length = 933

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 8/128 (6%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   K +DRII+ G   + D  K  +T+   + P   K  P A++ L GI+++
Sbjct: 13  VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +FS    +  +    +N  ++AHN  FD+ F+N EL      P D  + IDT+ 
Sbjct: 70  EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFD-GKAIDTVE 126

Query: 129 IARRKHPS 136
           +A+   P+
Sbjct: 127 LAQIAFPT 134


>gi|302184787|ref|ZP_07261460.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           syringae 642]
          Length = 203

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 9/169 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+   +  R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 3   RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF    +   +AHNA FD  F + EL RI +          
Sbjct: 60  SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIQRT--REQSFAC 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +L +ARR  P + N       RY         H A+ D+ + +++ + +
Sbjct: 116 SLLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTVHL 164


>gi|34557013|ref|NP_906828.1| DNA polymerase III subunit epsilon [Wolinella succinogenes DSM
           1740]
 gi|34482728|emb|CAE09728.1| DNA POLYMERASE III, EPSILON SUBUNIT, PUTATIVE [Wolinella
           succinogenes]
          Length = 203

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 9/170 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD ETTGLD K D II + AV++ D    T+   Q+F+ P G  N  +++K+H I   
Sbjct: 32  VAFDCETTGLDPKKDEIISLAAVKIRDNKILTSEKLQLFVKPKGEINI-DSIKIHHIRAC 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +  +       F DF    N   + +  +FDV  IN  +  +    L P ++I+  +
Sbjct: 91  DVSNGITSEEAALRFLDFLG--NRPLVGYYLEFDVALINRIIHPLLGITL-PQKMIEVSA 147

Query: 129 IARRKH----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           I   K     P    DL        + +   ++H AL D+   + +Y+K+
Sbjct: 148 IYYDKKIGLIPEGHVDLRLRSILRDLKLPELTQHDALGDAITSALIYLKL 197


>gi|124002035|ref|ZP_01686889.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134]
 gi|123992501|gb|EAY31846.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134]
          Length = 463

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTGL   +D+I EI A+   D      +F   + P     S    ++ GIT++ +
Sbjct: 4   IIDVETTGLRPTDDKITEI-AIYKHDGESVVDSFHSLVNPECYI-SDRITQITGITNDMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + P F  I  +       +   ++AHNA FD GF+  E + +        + + T+ ++
Sbjct: 62  ANAPKFYEIAKDILAI--TEGTVFVAHNAHFDYGFVREEFKALGYK--FTRKTLCTVRVS 117

Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R+  P      L  LCK + I +++   H A  D+    +V+ K++
Sbjct: 118 RKVFPGLPSYSLAKLCKHFKIQLTNH--HRASADALATVEVFEKLL 161


>gi|323163498|gb|EFZ49324.1| ribonuclease T [Escherichia coli E128010]
          Length = 215

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQRIN 114
           I D    D+ + S  +    + F              A  +AHNA FD  F+ A  +R++
Sbjct: 80  I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERVS 137

Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             ++P  P    DT ++A       +  L+  C+  G+       H AL D+   + ++ 
Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195

Query: 173 KMM 175
           +++
Sbjct: 196 EIV 198


>gi|292899378|ref|YP_003538747.1| ribonuclease T [Erwinia amylovora ATCC 49946]
 gi|291199226|emb|CBJ46341.1| ribonuclease T [Erwinia amylovora ATCC 49946]
          Length = 224

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D+K + ++EI AV L +D   + + + T    + P  G     EAL  +G
Sbjct: 20  VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDETLHFNVEPFPGSVLLAEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +     A  +AHNA FD+ F+NA  +R  + 
Sbjct: 80  IDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   G++      H AL D+   +D++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLVL--GQTVLAKACNAAGMSFDSAQAHSALYDTLQTADLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|15829146|ref|NP_326506.1| DNA polymerase III PolC [Mycoplasma pulmonis UAB CTIP]
 gi|14424449|sp|P47729|DPO3_MYCPU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14090090|emb|CAC13848.1| DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII) [Mycoplasma
           pulmonis]
          Length = 1435

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 6/167 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+DIETTGL    + +I+ GA  ++   +   T   F+ P  + +S    KL GIT E 
Sbjct: 405 VVYDIETTGLSPMLNELIQFGA-SVIKNGRIIETHHFFIKPKSKLDSFTT-KLTGITQEH 462

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+          +    F  +    +AHNA FD  F+  +    N    +    IDTL++
Sbjct: 463 LEKGYELQEALEKISSIFKARIM--VAHNAAFDHNFLKQKFID-NNIEFEEMISIDTLNL 519

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+  +P  R+  L  +  +  +       H A  DS +L++++I  M
Sbjct: 520 AKVLNPIYRSYRLGEVASKLSVVYDPSIAHRADYDSSVLTNIFILQM 566


>gi|146308744|ref|YP_001189209.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
 gi|145576945|gb|ABP86477.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
          Length = 199

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 6/164 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETTG+     R  EIG   + D    +R +Q  +  +G    P   +L GI++  L
Sbjct: 6   VIDFETTGVSPSQARATEIGVAIIEDGRIVDR-YQSLMN-SGAWVPPFIEQLTGISNAML 63

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P    + +E  DF  E+    +AHNA FD  F +AEL R+ +    P      LS  
Sbjct: 64  RKAPPSEQVMNEVADFIGER--PLLAHNASFDQKFWDAELARVRRRRSQPFACSLLLSRR 121

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                 S + L +L    G+  + R+ H AL D+ + +++ + +
Sbjct: 122 LLPEAPS-HKLGNLNAWAGLPDTGRA-HRALADAEMAANLTLHL 163


>gi|262375958|ref|ZP_06069189.1| ribonuclease T [Acinetobacter lwoffii SH145]
 gi|262309052|gb|EEY90184.1| ribonuclease T [Acinetobacter lwoffii SH145]
          Length = 219

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 24/186 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ET G +++ D ++EI A+ ++ Y++  + F      +   N  E   L   + EF
Sbjct: 23  VVVDVETAGFNAQTDALLEIAAIPIV-YNEEGQ-FVPGQAYHAHINPFEGANLDRRSLEF 80

Query: 70  LKDKPS--------------FSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR 112
           +   PS                 IF    +   +QN   A  + HNA FD+GF+ A + R
Sbjct: 81  IGIDPSNPMRIAMAEDEKTALKRIFKSVNEVRRQQNCTHAVLVGHNAHFDLGFLQAAIAR 140

Query: 113 I---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
               N++P     + DT++++       +  L   C + GI    +  H AL D+   ++
Sbjct: 141 TGTKNQNPFHSFSVFDTVTLSAVMF--GQTVLAKSCIQAGIEFDGKEAHSALYDTQKTAE 198

Query: 170 VYIKMM 175
           ++  ++
Sbjct: 199 LFCYIL 204


>gi|183985197|ref|YP_001853488.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium marinum M]
 gi|183178523|gb|ACC43633.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium marinum M]
          Length = 329

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G    + R+I + A+ L        +    L P      P    +HG+T   L
Sbjct: 18  VVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPG---VDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-INAELQRINKDPLDPSRIIDTLSI 129
           +D+P F+ I  +  +    +    +AHN  FD  F          + P+D   ++ T+ +
Sbjct: 75  EDQPQFADIVGDLTELLRGRTL--VAHNVAFDYSFLAAEAELADAELPVD--SVMCTVEL 130

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR      N  L +L   +G+T      H A  D+ +LS +    +
Sbjct: 131 ARRLELGIDNLRLETLAAHWGVT--QERPHDAFDDALVLSGILAPAL 175


>gi|320539160|ref|ZP_08038831.1| ribonuclease T (RNase T) [Serratia symbiotica str. Tucson]
 gi|320030798|gb|EFW12806.1| ribonuclease T (RNase T) [Serratia symbiotica str. Tucson]
          Length = 248

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 22/195 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L +D   + + + T    + P  G    PEAL  +G
Sbjct: 52  VVIDVETAGFNAKTDALLEIAAVTLKMDEGGWLQQDETLHFHVEPFEGANLQPEALAFNG 111

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF         +    A  +AHNA FD  F+ A  +R  + 
Sbjct: 112 IDPHNPLRGAVSEYDALHAIFKTVRAGIKHRGCNRAIIVAHNANFDHSFLMAAAERASLK 171

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   G+       H AL D+   + ++ ++
Sbjct: 172 RNPFHPFATFDTAALSGLV--LGQTVLAKACTAAGMPFDSSQAHSALYDTEQTALLFCEL 229

Query: 175 M-----VGGSQINFG 184
           +     +GG  +  G
Sbjct: 230 VNRWKRLGGWPLTLG 244


>gi|315638420|ref|ZP_07893597.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis JV21]
 gi|315481411|gb|EFU72038.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis JV21]
          Length = 260

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 13/172 (7%)

Query: 3   RKNKMRKIVF---DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R NK+++ VF   DIE+TG    + +I+EIGAV++ ++ + +R F+ F+     +     
Sbjct: 63  RTNKIKEQVFCIVDIESTG-GINSGQILEIGAVKIQNHKELDR-FESFV--KVDEIPLNI 118

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L GI    +KD P+ + +   F  F N  ++ ++AHN KFD  FI+  L       L 
Sbjct: 119 TELTGIELNMVKDAPNLTRVLEAFRLFLN--DSVFVAHNVKFDYNFISKSLYECGFGIL- 175

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +R I T+  A+    SS   L++L +   I  +H   H AL D+   ++++
Sbjct: 176 LNRKICTIDFAQCCIESSHYKLDALKEILKIESTH---HRALNDALAAAEIF 224


>gi|262165240|ref|ZP_06032977.1| ribonuclease T [Vibrio mimicus VM223]
 gi|262024956|gb|EEY43624.1| ribonuclease T [Vibrio mimicus VM223]
          Length = 224

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L      N     T    + P  G      AL+  G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGNLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   +      E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 80  IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++       +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|167462368|ref|ZP_02327457.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 203

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 21/174 (12%)

Query: 7   MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLH 63
           MR+I  VFD+ETTGLD   D+I EI A+   D  +      + +  N G K +PE + L 
Sbjct: 1   MREIYTVFDLETTGLDPTKDQITEIAAIR-TDLIREYGRLDIRITKNSGTKLTPEIVNLT 59

Query: 64  GITDEFLKD---KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           GI++  ++    +P    + S F           +AH+A FD+ F+ A  Q       +P
Sbjct: 60  GISESMMRGGVPEPVAIMLLSCFM-----SGTIVVAHHAPFDLAFL-ARYQ------FEP 107

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              + T ++++         L S+ +R GI ++    H A+ D      V+ +M
Sbjct: 108 DSFVCTRALSKLVESDESASLASVAERRGIELT--GHHRAMNDVEATVKVFQQM 159


>gi|229166488|ref|ZP_04294244.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH621]
 gi|228617062|gb|EEK74131.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH621]
          Length = 934

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+      +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPLFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            ++ +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DEDLVKQAPLFRDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEVHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|260587155|ref|ZP_05853068.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
 gi|260542350|gb|EEX22919.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
          Length = 244

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 17/140 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-------TFQVFL-CPNGRKNSPEALK 61
           + FD ETTGL++++ +IIE+ A+ +    KT R       +  VF+  P G +   + ++
Sbjct: 15  VFFDTETTGLEAESCQIIELAAIRV---EKTERGTLRMADSADVFVKLPEGERIPQKIVE 71

Query: 62  LHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDP-- 117
           L GITDE L+++  + +   + F +         +AHNA+FD+ F    L+R  N  P  
Sbjct: 72  LTGITDEQLENEGITEAEAAARFTELIGGGRVLLVAHNAQFDLLFTAEMLRRHGNGGPEA 131

Query: 118 LDPSRIIDTLSIA--RRKHP 135
           L  +  +D+L++   RR +P
Sbjct: 132 LKAADYLDSLTVYKDRRAYP 151


>gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
 gi|295827583|gb|EDY45420.2| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
          Length = 331

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 12/187 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRI+      +    +    +   + P   +  P  + +HG+T E L
Sbjct: 21  VVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTLVNP---ERDPGPVWIHGLTSEVL 76

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSI 129
           +  P F  I  E     + +    +AHNA FD   +  E  R     P+   R + T+++
Sbjct: 77  EGAPLFPEIAGELSRRLDGRVL--VAHNAVFDWSMLAREYARAGITAPV--RRRLCTIAL 132

Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           A+    P   + L +L   +G  +  R  H AL D+ +L++ +   +   +  N      
Sbjct: 133 AKELALPLPNHKLETLAAHFG--VEQRRAHHALDDARVLAEAFRPSLRAAALGNVRLPLL 190

Query: 189 EDRFFKE 195
           E R   E
Sbjct: 191 ECRPLTE 197


>gi|262041960|ref|ZP_06015142.1| exodeoxyribonuclease 10 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040658|gb|EEW41747.1| exodeoxyribonuclease 10 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 219

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 29/168 (17%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++D   TN      L    R  SP+A+ +H IT+E +
Sbjct: 4   VIDTETCGLQGG---IVEIASVDIVDGQITNPMSH--LVRPDRPISPQAMAIHRITEEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    I   +        + W +AHNA FD   +          P      I T+ +
Sbjct: 59  ADKPWIEEIIPHY------HGSRWYVAHNASFDRRVL----------PEMHGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITIS-------HRSKHGALLDSHLLSDV 170
           ARR  P  +     L K   + ++       HR+ +   + + LL D+
Sbjct: 103 ARRLWPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYITAALLLDI 150


>gi|47566006|ref|ZP_00237044.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           cereus G9241]
 gi|47556923|gb|EAL15253.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           cereus G9241]
          Length = 934

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ + +   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELGQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|16760829|ref|NP_456446.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16765220|ref|NP_460835.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29141480|ref|NP_804822.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62180453|ref|YP_216870.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|167993853|ref|ZP_02574946.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168233692|ref|ZP_02658750.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168259853|ref|ZP_02681826.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168820696|ref|ZP_02832696.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194469318|ref|ZP_03075302.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197265660|ref|ZP_03165734.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|200390618|ref|ZP_03217229.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|213419003|ref|ZP_03352069.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
 gi|213426806|ref|ZP_03359556.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213648159|ref|ZP_03378212.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|213851907|ref|ZP_03381439.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|224583619|ref|YP_002637417.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|238912063|ref|ZP_04655900.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289829019|ref|ZP_06546715.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25511843|pir||AB0741 exodeoxyribonuclease X (EC 3.1.11.-) [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16420413|gb|AAL20794.1| DNA exonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16503126|emb|CAD05629.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29137107|gb|AAO68671.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62128086|gb|AAX65789.1| DNA exonuclease X, degrades ss and ds DNA with 3'-5' polarity
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194455682|gb|EDX44521.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197243915|gb|EDY26535.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|199603063|gb|EDZ01609.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205328180|gb|EDZ14944.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205332278|gb|EDZ19042.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205342565|gb|EDZ29329.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205351180|gb|EDZ37811.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|224468146|gb|ACN45976.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261247049|emb|CBG24868.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993856|gb|ACY88741.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158399|emb|CBW17906.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912871|dbj|BAJ36845.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320085616|emb|CBY95394.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321224521|gb|EFX49584.1| Exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322714928|gb|EFZ06499.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323130162|gb|ADX17592.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332988772|gb|AEF07755.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           +RR  P  +    +L K   +++        H AL D ++ + + I +M
Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|283798273|ref|ZP_06347426.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
 gi|291074053|gb|EFE11417.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
          Length = 244

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 17/140 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-------TFQVFL-CPNGRKNSPEALK 61
           + FD ETTGL++++ +IIE+ A+ +    KT R       +  VF+  P G +   + ++
Sbjct: 15  VFFDTETTGLEAESCQIIELAAIRV---EKTERGTLRMADSADVFVKLPEGERIPQKIVE 71

Query: 62  LHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDP-- 117
           L GITDE L+++  + +   + F +         +AHNA+FD+ F    L+R  N  P  
Sbjct: 72  LTGITDEQLENEGITETEAAARFTELIGGGRVLLVAHNAQFDLLFTAEMLRRHGNGGPEV 131

Query: 118 LDPSRIIDTLSIA--RRKHP 135
           L  +  +D+L++   RR +P
Sbjct: 132 LKAADYLDSLTVYKDRRAYP 151


>gi|260592337|ref|ZP_05857795.1| exonuclease [Prevotella veroralis F0319]
 gi|260535724|gb|EEX18341.1| exonuclease [Prevotella veroralis F0319]
          Length = 283

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGLD   DRII+I  +++    K  R    F+ P G+       +L GI+DE 
Sbjct: 10  IVFDLETTGLDLVADRIIQISYIKVYADGKEERE-NFFINP-GKHIPTIVTELTGISDED 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127
           + D P+F     E  D F     ++   N+ +FDV  +  E  R   D      R+ID  
Sbjct: 68  VADAPTFKQKAKELADKF--AGCDFAGFNSNRFDVPMLAEEFLRAGIDFDFSKCRLIDAQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
           +I    H   R +L +  K Y
Sbjct: 126 NIY---HKMERRNLAAAYKFY 143


>gi|161613571|ref|YP_001587536.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|198244129|ref|YP_002215209.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|161362935|gb|ABX66703.1| hypothetical protein SPAB_01291 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197938645|gb|ACH75978.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326622957|gb|EGE29302.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSK---HGALLDSHLLSDVYIKMM 175
           +RR  P  +    +L K   +++        H AL D ++ + + I +M
Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHYHRALYDCYITAALLIDIM 151


>gi|307823995|ref|ZP_07654222.1| ribonuclease T [Methylobacter tundripaludum SV96]
 gi|307734779|gb|EFO05629.1| ribonuclease T [Methylobacter tundripaludum SV96]
          Length = 207

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--EL---LDYSKTNR-TFQVFLCPNGRKNSPEALKLH 63
           +V DIET G + K + ++EI AV  EL    D   T R T  V    N   +   ALK +
Sbjct: 18  VVVDIETAGFNPKKNALLEIAAVIVELNSNSDLEITERYTTHVIPFKNAELDE-AALKFN 76

Query: 64  GITDEF-----LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--I 113
           GI         +++K +   +F    +     N   A  + HN  FD+GF+NA +QR  I
Sbjct: 77  GIDPHHPFRMAIEEKDALHMLFKPIKEAVKRNNCTRAILVGHNPAFDIGFLNAAIQRTQI 136

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT ++    +   +  L  + +  G+   +   H AL D+   ++++  
Sbjct: 137 KRSPFHPFSTFDTATLGGLVY--QQTVLAKIAQTAGLDWDNEKAHSALYDAEKTAELFCM 194

Query: 174 MM 175
           ++
Sbjct: 195 IV 196


>gi|269139030|ref|YP_003295731.1| ribonuclease T [Edwardsiella tarda EIB202]
 gi|267984691|gb|ACY84520.1| ribonuclease T [Edwardsiella tarda EIB202]
 gi|304558963|gb|ADM41627.1| Ribonuclease T [Edwardsiella tarda FL6-60]
          Length = 254

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D+  + ++EI AV L      + +T++     + P  G   SPEAL  +G
Sbjct: 53  VVIDVETAGFDANRNALLEIAAVTLRMNDDGWLETDQCLHFHITPFEGAVLSPEALAFNG 112

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +Q    A  +AHNA FD  F+ A  +R  + 
Sbjct: 113 IDPHNPLRGAVSEYTALHAIFKMVRKGIKDQACNRAVVVAHNAHFDHSFLMAAAERAGLK 172

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C    I       H AL D+   + ++ ++
Sbjct: 173 RNPFHPFATFDTAALSGLV--LGQTVLAKACLSAEIPFDSAQAHSALYDTQQTATLFCEL 230

Query: 175 M 175
           +
Sbjct: 231 V 231


>gi|332534627|ref|ZP_08410459.1| ribonuclease T [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035907|gb|EGI72388.1| ribonuclease T [Pseudoalteromonas haloplanktis ANT/505]
          Length = 234

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 23/184 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++EI A  L +D       + T    + P  G      A+  +G
Sbjct: 19  VVIDVETAGFNKETDALLEIAASVLKMDDEGLLSIDHTVHFHVQPFEGANIEQAAIDFNG 78

Query: 65  I-----------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR- 112
           I            DE +K+      +  +       Q +  +AHNA FD GF+NA ++R 
Sbjct: 79  IDPFSPLRGAVPEDEVIKE---ICKVVRKAQKAAGCQRSVIVAHNAAFDHGFLNAAIERN 135

Query: 113 -INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            I + P  P    DT S+A       +  L   C+  GI   +   H AL D+   +++Y
Sbjct: 136 NIKRTPFHPFVSFDTTSLAGLA--LGQTVLAKACRAAGIEFDNSQAHSALYDTERTAELY 193

Query: 172 IKMM 175
             ++
Sbjct: 194 CLIV 197


>gi|167753685|ref|ZP_02425812.1| hypothetical protein ALIPUT_01966 [Alistipes putredinis DSM 17216]
 gi|167658310|gb|EDS02440.1| hypothetical protein ALIPUT_01966 [Alistipes putredinis DSM 17216]
          Length = 257

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 7/109 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I FD+ETTG+D   DRI+EI  V+++ D  +  RT ++     G     EA  +HGITDE
Sbjct: 10  IFFDLETTGIDIARDRIVEISMVKVMPDGEEIVRTRRI---NPGMPIPAEATAIHGITDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
            +KD P F  I      F   +  ++   N+ +FD+  +  E  R   D
Sbjct: 67  DVKDCPLFPQIAKSLAQFI--EGCDFGGFNSNRFDLPMLVEEFMRAGVD 113


>gi|167552492|ref|ZP_02346245.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|197251607|ref|YP_002146145.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197215310|gb|ACH52707.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205322894|gb|EDZ10733.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           +RR  P  +    +L K   +++        H AL D ++ + + I +M
Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|311694106|gb|ADP96979.1| ribonuclease T [marine bacterium HP15]
          Length = 208

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++E+ AV L      + +   T    + P  G      AL   G
Sbjct: 11  VVVDVETAGFNPERDALLEVAAVILTMDDDGWVRRAETHVQQIDPFEGANLEQSALDFTG 70

Query: 65  ITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I       E + ++   S IFS         +   A  + HNA FD  FI A   R  I 
Sbjct: 71  IDPWNPEREAVPEREGLSEIFSPIRKAVKNHDCKRAVLVGHNATFDHNFIFAAALRADIR 130

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +      L   CK  GI  S++  H A  D+   +D++  +
Sbjct: 131 RNPFHPFSTFDTATLAGLAY--GHTVLAQACKLAGIPFSNKEAHSAAYDAEKTADLFCGI 188

Query: 175 M 175
           +
Sbjct: 189 V 189


>gi|182439459|ref|YP_001827178.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780122|ref|ZP_08239387.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|178467975|dbj|BAG22495.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326660455|gb|EGE45301.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 341

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 10/186 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRII      L         +   + P   +  P  + +HG+T + L
Sbjct: 21  VVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNP---ERDPGPVWIHGLTSDVL 76

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  +  E      ++    +AHNA FD   I  E  R +       R+  T+++A
Sbjct: 77  EGAPLFPEVAEELSARLADRVL--VAHNAAFDWSMIAREYARASVVAPVEQRLC-TIALA 133

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           +  + P   + L SL   +G+ +  R+ H AL D+ +L++ +   +   ++        E
Sbjct: 134 KELRLPLPNHKLASLAAHFGV-VQQRAHH-ALDDARVLAEAFRPSLHAAARGGVRLPLLE 191

Query: 190 DRFFKE 195
            R   E
Sbjct: 192 CRPLTE 197


>gi|262368659|ref|ZP_06061988.1| ribonuclease T [Acinetobacter johnsonii SH046]
 gi|262316337|gb|EEY97375.1| ribonuclease T [Acinetobacter johnsonii SH046]
          Length = 219

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 28/188 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLHGITD 67
           +V D+ET G +++ D ++EI A+ ++     N   Q    P  +   N  E   L   + 
Sbjct: 23  VVVDVETAGFNAQTDALLEIAAIPII----YNEEGQFVPGPAHHAHINPFEGANLDRRSL 78

Query: 68  EFLK--------------DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAEL 110
           +F+               +K +   IF    +   +QN   A  + HNA FD+GF+ A +
Sbjct: 79  DFIGIDPFNPMRMAMAEDEKTALKRIFKAVNEVRRQQNCTHAVLVGHNAHFDLGFVQAAI 138

Query: 111 QRI---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            R    N++P     + DT++++       +  L   C + GI    R  H AL D+   
Sbjct: 139 ARTGTKNQNPFHSFSVFDTVTLSAVMF--GQTVLAKSCIQAGIEFDGREAHSALYDTQKT 196

Query: 168 SDVYIKMM 175
           ++++  ++
Sbjct: 197 AELFCYIL 204


>gi|238898583|ref|YP_002924264.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466342|gb|ACQ68116.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 221

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L      +    ++    + P +G    PEAL  +G
Sbjct: 27  VVIDVETAGFNTKTDALLEIAAVTLFMDKEGWLHIEQSMHFHVEPFSGANFEPEALAFNG 86

Query: 65  I-TDEFLKDKPS----FSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR--IN 114
           I     L+D  S       IF        EQ    A  +AHNA FD  F+    +R  + 
Sbjct: 87  IDPHSPLRDAKSEFEVLKKIFKWVQKGMKEQYCKRAIIVAHNAGFDHAFVMNAAKRTGLK 146

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   G+       H AL D+   + ++ ++
Sbjct: 147 QNPFHPFSTFDTAALSGLA--LGQTVLAKACLTAGLNFDMSRAHSALYDTQQTARLFCEL 204

Query: 175 M 175
           +
Sbjct: 205 V 205


>gi|269102313|ref|ZP_06155010.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162211|gb|EEZ40707.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 242

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 21/170 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+SK D I+ IG +    +   ++  Q ++    R  + E++ +HGIT   
Sbjct: 53  VALDFETTGLNSKTDDIVSIGLIPFTIHRIYSKQAQHWVVKPKRPLAEESVVIHGITHSD 112

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTLS 128
           ++  P    I  +  D    +    + H    +  F++A LQ RI +    P  ++DTL+
Sbjct: 113 IQAAPDLRRILDQVLDALAGKVV--VVHYKTIERQFMDAALQLRIGEGIEFP--VVDTLA 168

Query: 129 ----IARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDS 164
               I R+KH    N           LN   +RYG+       H AL D+
Sbjct: 169 LEYEIERQKHSGFWNRLRGRRPGSVRLNKCRERYGLPTY--QPHHALTDA 216


>gi|194442926|ref|YP_002041143.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194401589|gb|ACF61811.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           +RR  P  +    +L K   +++        H AL D ++ + + I +M
Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|168238504|ref|ZP_02663562.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194735808|ref|YP_002114913.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204930999|ref|ZP_03221825.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194711310|gb|ACF90531.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288686|gb|EDY28061.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204320043|gb|EDZ05248.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322616877|gb|EFY13785.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618116|gb|EFY15008.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625787|gb|EFY22606.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626239|gb|EFY23049.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632652|gb|EFY29397.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638997|gb|EFY35690.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640437|gb|EFY37090.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644201|gb|EFY40746.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649525|gb|EFY45957.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655432|gb|EFY51740.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660811|gb|EFY57042.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662892|gb|EFY59099.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668077|gb|EFY64236.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674164|gb|EFY70258.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675483|gb|EFY71557.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683103|gb|EFY79119.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686797|gb|EFY82775.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195312|gb|EFZ80492.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323199204|gb|EFZ84299.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202983|gb|EFZ88016.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207461|gb|EFZ92409.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213958|gb|EFZ98726.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217444|gb|EGA02163.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323219962|gb|EGA04435.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323231467|gb|EGA15580.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235907|gb|EGA19986.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240478|gb|EGA24521.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245369|gb|EGA29369.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323246734|gb|EGA30706.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323253590|gb|EGA37418.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255358|gb|EGA39128.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323260250|gb|EGA43871.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266842|gb|EGA50328.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323269048|gb|EGA52504.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           +RR  P  +    +L K   +++        H AL D ++ + + I +M
Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|315652207|ref|ZP_07905202.1| DNA polymerase III PolC-type [Eubacterium saburreum DSM 3986]
 gi|315485513|gb|EFU75900.1| DNA polymerase III PolC-type [Eubacterium saburreum DSM 3986]
          Length = 237

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 11/164 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG+    D+IIE+G +++++ S     F   + PN    S + L L GI +  
Sbjct: 7   VAIDLETTGISVSKDKIIEVGLIKVIN-SHIEEMFSCIINPN-MPVSTKILNLTGIDENE 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLS 128
           +K       +  +  +F +    + I HN  FD  FI  E    N   L+   R IDT  
Sbjct: 65  IKTARYIQDVIGDIVEFCD--GFDLIGHNTIFDYSFIKKEA---NNAGLNFEKRGIDTYK 119

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           + ++  P   + +L   C  +G  I  ++ H A  D++    +Y
Sbjct: 120 LCKKILPPYIQKNLTDACAYFG--IERKNMHRAFSDAYFTHMLY 161


>gi|149196822|ref|ZP_01873875.1| exonuclease [Lentisphaera araneosa HTCC2155]
 gi|149139932|gb|EDM28332.1| exonuclease [Lentisphaera araneosa HTCC2155]
          Length = 261

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 10/151 (6%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  R IVF D+ETTGL+   DRIIEI  +++  +    R  +       +  S EA 
Sbjct: 1   MKLNLQRPIVFFDLETTGLNPTEDRIIEICCIKV--HPDGKRDIKTRRVNPEKPISSEAS 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLD 119
           ++ GITDE +KD+P+F  +    + FF  +  +   +N  +FD+  +  E +R      D
Sbjct: 59  EITGITDEDVKDEPTFKQMAKGIYKFF--EGCDISGYNIMRFDLRVLTEEFKRAGI-SFD 115

Query: 120 PSR--IIDTLSIARRKHPSS-RNDLNSLCKR 147
            S   ++D   I  +K P +    L   CK+
Sbjct: 116 ASAHDLVDVQRIFHKKEPRTLEAALRFYCKK 146


>gi|242309952|ref|ZP_04809107.1| DNA polymerase III subunit epsilon [Helicobacter pullorum MIT
           98-5489]
 gi|239523249|gb|EEQ63115.1| DNA polymerase III subunit epsilon [Helicobacter pullorum MIT
           98-5489]
          Length = 247

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 17/183 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEAL-KLHGITDE 68
           + DIET G +    + IEIGA+ L       + FQ F+ C    +  PE + K+  IT E
Sbjct: 73  IVDIETNGHNPFLHQPIEIGAI-LYQNGMVQKEFQSFVFC----EEIPEYITKITNITTE 127

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            L++ P    +   F  F  +    ++AHN  FD GF++  L       L +PS  + T+
Sbjct: 128 MLRNAPPIHQVLESFRIFLGD--CVFVAHNVGFDYGFLSNSLHHYGFGYLYNPS--LCTI 183

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            +A++   + R  L  L     + I+H   H AL D+ +  +V+     G   +N    T
Sbjct: 184 KLAQKTFQAPRYSLEFLNGF--LNINHSPLHRALEDAKVALEVF---KTGLKNLNKNIYT 238

Query: 188 NED 190
           +ED
Sbjct: 239 SED 241


>gi|152970907|ref|YP_001336016.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238895421|ref|YP_002920156.1| exodeoxyribonuclease X [Klebsiella pneumoniae NTUH-K2044]
 gi|150955756|gb|ABR77786.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238547738|dbj|BAH64089.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 219

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 29/168 (17%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++D   TN      L    R  SP+A+ +H IT+E +
Sbjct: 4   VIDTETCGLQGG---IVEIASVDIVDGQITNPMSH--LVRPDRPISPQAMAIHRITEEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    I   +        + W +AHNA FD        +R+   P      I T+ +
Sbjct: 59  ADKPWIEEIIPHY------HGSPWYVAHNASFD--------RRVL--PEMHGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITIS-------HRSKHGALLDSHLLSDV 170
           ARR  P  +     L K   + ++       HR+ +   + + LL D+
Sbjct: 103 ARRLWPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYITAALLLDI 150


>gi|289640817|ref|ZP_06472988.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca
           glomerata]
 gi|289509393|gb|EFD30321.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca
           glomerata]
          Length = 629

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 5/123 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG  + +  I EIGAV++    +        + P+     P    L GITD  
Sbjct: 94  VVVDLETTGSRAADSEITEIGAVKIRG-GEVLAELATLVRPDA-PIPPFISVLTGITDAM 151

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P   +    F +F +   +  +AHNA FD+GF+     R    P+     +DTL I
Sbjct: 152 VATAPRIDAALPTFLEFAH--GSVLVAHNAPFDLGFLREACVRCGH-PVPDWEHLDTLRI 208

Query: 130 ARR 132
           AR+
Sbjct: 209 ARQ 211


>gi|168462596|ref|ZP_02696527.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195633859|gb|EDX52211.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           +RR  P  +    +L K   +++        H AL D ++ + + I +M
Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|317492115|ref|ZP_07950545.1| ribonuclease T [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919820|gb|EFV41149.1| ribonuclease T [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 218

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D+  + ++EI AV L      + + + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFDANTNALLEIAAVTLRMTDDGWLEPDETLHFHVEPFVGSVLVPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114
           I  E      + +  +  +IF        E +   A  +AHNA FD  F+ A  +R+   
Sbjct: 80  IDPENPLRGAVSEYEALHAIFKAVRKGIKEHDCNRAVIVAHNAHFDHSFVMAAAERVGLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C    I       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACIAANIPFDSTQAHSALYDTEQTATLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|229525619|ref|ZP_04415024.1| ribonuclease T [Vibrio cholerae bv. albensis VL426]
 gi|229339200|gb|EEO04217.1| ribonuclease T [Vibrio cholerae bv. albensis VL426]
          Length = 224

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D +       T    + P  G      AL+  G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTVHFHVEPFEGANLEKAALEFTG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 80  IYDPFSPLRGAVSEDHALKEIYRLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++       +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|224541140|ref|ZP_03681679.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525949|gb|EEF95054.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM
           15897]
          Length = 297

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           +FDIE   L++    +  IG V L D  K   TF   + P      P   K+H I  + L
Sbjct: 7   IFDIEE--LNNDPVSVCSIGIVVLEDM-KVKETFYSLIRPPKLTFDPYRYKVHKIRPQDL 63

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSI 129
           K +P+F  I+ +   +F  +N+  I+H+ + D+  + A  +R   + P     +  TL +
Sbjct: 64  KKQPTFPEIWPKISKYF--ENSIVISHDIQSDLNHLLAVFRRFRIRKPT--CYLSCTLVL 119

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+  HP   +  L SLC  Y + +   + H AL DS   +++  KMM
Sbjct: 120 AKLFHPELQKYGLGSLCDFYSVDL--ENAHNALADSLACAELLKKMM 164


>gi|53803894|ref|YP_114507.1| ribonuclease T [Methylococcus capsulatus str. Bath]
 gi|53757655|gb|AAU91946.1| ribonuclease T [Methylococcus capsulatus str. Bath]
          Length = 209

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET+G D   + ++EI AV L +D S      RT Q+ + P  G K    AL  + 
Sbjct: 18  VVVDVETSGFDPHANALLEIAAVHLDMDESGNLHPVRTHQLHVKPFEGAKLDEAALNFNK 77

Query: 65  ITD----EFLKD-KPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINA--ELQRIN 114
           I       F  D + + S IF        +     A  + HN  FD+ F+NA     RI 
Sbjct: 78  INPFHPFRFAVDEREALSQIFDAVQQSIRQHGCTRAILVGHNPAFDIAFLNAASSRARIK 137

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           K+P  P    DT ++    +   +  L    +  G++  H+  H A  D++  + ++  +
Sbjct: 138 KNPFHPFSTFDTATLGGLAY--GQTVLARAAQAAGLSWDHQEAHSAAYDANQTARLFCTI 195

Query: 175 M 175
           +
Sbjct: 196 V 196


>gi|256390707|ref|YP_003112271.1| exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
 gi|256356933|gb|ACU70430.1| Exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
          Length = 295

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 20/161 (12%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++ R   FD ETTG D K+ RI+    V       ++   + FL   G +   EA  +HG
Sbjct: 68  HRRRLAGFDTETTGRDPKSVRIVSAALV------TSDGAEKAFLIDPGVEIPAEATAIHG 121

Query: 65  ITDEFLKDKPSFS-SIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR------IN 114
           IT E+ ++  +       E  D    +       +  NA +D+  + AEL R       +
Sbjct: 122 ITTEYAREHGTEPRRTLDEIADALAAELRAGTPLVVFNAPYDLTLLEAELARNGLTPLAS 181

Query: 115 KDPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITIS 153
           + P+ P  +ID L I R+  K       L + C+ YG+TI+
Sbjct: 182 RAPVAP--VIDPLVIDRQMDKFRKGARTLEAQCQFYGVTIT 220


>gi|229172279|ref|ZP_04299843.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3]
 gi|228611267|gb|EEK68525.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3]
          Length = 934

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL+      +   + +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRWAGYTEVHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|162447750|ref|YP_001620882.1| DNA polymerase III subunit epsilon [Acholeplasma laidlawii PG-8A]
 gi|161985857|gb|ABX81506.1| DNA polymerase III, epsilon subunit [Acholeplasma laidlawii PG-8A]
          Length = 227

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 14/162 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-----FLCPNGRKNSPEALKLHG 64
           +VFD ETTGL  K D++IE+GAV L    K   T+++     +L       +     L G
Sbjct: 9   LVFDFETTGLTPKRDKVIEVGAVLL---EKIGDTYEIVQEIDYLIKQQTPITDFISNLTG 65

Query: 65  ITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSR 122
           IT+E L +D       F +  +  +E +   +A+N  FD+GF++A  Q  +  +    + 
Sbjct: 66  ITNEMLARDGVEEEYAFRQLDNLIDE-DTLLVAYNLAFDIGFLSALYQTYVAHNYKIQND 124

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           I+D +++ + ++P      N++ +     +S+   H A  D+
Sbjct: 125 ILDCMAVYKDRYPYPHKLENAVAR---FELSNNQAHRASEDA 163


>gi|325288177|ref|YP_004263967.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489]
 gi|324323631|gb|ADY31096.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489]
          Length = 454

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ DIETTG     + I EI A+   D  K    F   + P  ++  P  +KL GI D+ 
Sbjct: 3   VILDIETTGGKFNEEGITEI-AIHRFDGHKVVDKFISLVNPE-KEIQPFVVKLTGINDKM 60

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+  P F  I     +    ++A  +AHNA+FD   +  E +R+  +     + + T+++
Sbjct: 61  LRTAPKFYEIAKRIVEI--TEDAVLVAHNAQFDYRILRTEFRRLGYNF--ERKTLCTVNL 116

Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167
           ++   P   +  L  L +  GI +S  HR+   AL    L 
Sbjct: 117 SKELIPDKESYSLGKLVRSLGIPVSDRHRANGDALATLQLF 157


>gi|318060902|ref|ZP_07979623.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
          Length = 239

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 17/165 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI-TDEFL 70
           FD+ETTG D + DRI+   AV  LD S T    + +L   G +   EA  +HGI T    
Sbjct: 11  FDLETTGTDVEQDRIV-TAAVIRLDSSGTVAHTRTWLLDPGVEIPAEATAIHGIPTARAR 69

Query: 71  KDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPL------DPS 121
            D        +E  +    +       +  NA++D+  ++ E +R     L      +P+
Sbjct: 70  ADGAPARGAVAEITEALAAELRAGTPLVVMNARYDLSLLDRECRRHGVPALAELLGAEPA 129

Query: 122 RIIDTLSI---ARRKHPSSRNDLNSLCKRYGITI--SHRSKHGAL 161
            +ID L +   A R    SR  L +LC  YG+ +  +H ++  AL
Sbjct: 130 PVIDPLVLDKHADRYRRGSRV-LAALCAHYGVRLDTAHDARSDAL 173


>gi|238753629|ref|ZP_04614991.1| Ribonuclease T [Yersinia ruckeri ATCC 29473]
 gi|238708181|gb|EEQ00537.1| Ribonuclease T [Yersinia ruckeri ATCC 29473]
          Length = 217

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L +D   + + + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAVTLKMDENGWLQRDETLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFI--NAELQRIN 114
           I         + +  +  +IF        ++    A  +AHNA FD  F+   AE   + 
Sbjct: 80  IDPSNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFVMEAAERACLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D+   ++++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACLTAGIPFDSTQAHSALYDTEQTAELFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|319936397|ref|ZP_08010813.1| DNA polymerase III [Coprobacillus sp. 29_1]
 gi|319808512|gb|EFW05064.1| DNA polymerase III [Coprobacillus sp. 29_1]
          Length = 187

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 11/130 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL   +D+IIE+G +++ +    ++  Q  L    R+ SP   KL GIT++ L
Sbjct: 24  VIDLETTGLSWADDKIIEVGILKIRNQQIIDKYSQ--LINPEREVSPFITKLTGITNDML 81

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
              P+   I  + + F  +     + HN  FD+ F+       N+  +D  +  +DTL  
Sbjct: 82  LGMPTLDEIRDDVFSFIGDDI--LLGHNTSFDLNFVA------NQFHIDIENEYMDTLQF 133

Query: 130 ARRKHPSSRN 139
            R+ +P  ++
Sbjct: 134 CRKVYPHMKH 143


>gi|57242277|ref|ZP_00370216.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis RM3195]
 gi|57016957|gb|EAL53739.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis RM3195]
          Length = 260

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 11/163 (6%)

Query: 3   RKNKMRKIVF---DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R +K+++ VF   DIE+TG    + +I+EIGAV++ ++ + +R F+ F+     +     
Sbjct: 63  RTSKIKEQVFCIVDIESTG-GINSGQILEIGAVKIQNHKELDR-FESFV--KVDEIPLNI 118

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            KL GI    +KD P+ + +   F  F N+  + ++AHN KFD  FI+  L       L 
Sbjct: 119 TKLTGIELNMVKDAPNLTRVLEAFRLFLND--SVFVAHNVKFDYNFISKSLYECGFGIL- 175

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGAL 161
            +R I T+  A+    SS   L++L +   I +I HR+ + AL
Sbjct: 176 LNRKICTVDFAQCCIQSSHYKLDTLKEILKIESIHHRALNDAL 218


>gi|302059908|ref|ZP_07251449.1| ribonuclease T [Pseudomonas syringae pv. tomato K40]
          Length = 225

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQV--FLCPNGRKNSPE--A 59
           +V D+ET G +S  D ++EI AV +        + +    F+V  F+  N    + E   
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFTG 92

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114
           +KL       + ++ + + IF            + A  + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  +
Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKPAELFCGI 210

Query: 175 M 175
           +
Sbjct: 211 V 211


>gi|228476288|ref|ZP_04060989.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis
           SK119]
 gi|314936052|ref|ZP_07843401.1| exonuclease [Staphylococcus hominis subsp. hominis C80]
 gi|228269571|gb|EEK11077.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis
           SK119]
 gi|313655869|gb|EFS19612.1| exonuclease [Staphylococcus hominis subsp. hominis C80]
          Length = 185

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 9/155 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ET   + K   I  +G V+++D ++   TF   + P+    S   + +HGI  + 
Sbjct: 7   IALDFETA--NKKRTSICSVGMVKVVD-NEIVETFYTLVNPHDYF-SETHIHVHGIHPKD 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P F  +F     F N+     +AHNA FD+G ++  L+ +N   +       +  +
Sbjct: 63  VKDAPDFKEVFPYMLQFINQ--LPVVAHNAAFDMGVLHQSLKHLNI-AVPSLTYFCSYQL 119

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           ARR   + R  L  L   Y +       H AL D+
Sbjct: 120 ARRTIKAYRYGLKHLMNHYNLNF--HGHHDALNDA 152


>gi|168241502|ref|ZP_02666434.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194450291|ref|YP_002045931.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194408595|gb|ACF68814.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205339659|gb|EDZ26423.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 232

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           +RR  P  +    +L K   +++        H AL D ++ + + I +M
Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|315127223|ref|YP_004069226.1| ribonuclease T [Pseudoalteromonas sp. SM9913]
 gi|315015737|gb|ADT69075.1| ribonuclease T [Pseudoalteromonas sp. SM9913]
          Length = 224

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 23/184 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++EI A  L +D       + T    + P  G      A++ +G
Sbjct: 19  VVIDVETAGFNKETDALLEIAASVLKMDDEGLLSIDHTVHFHVQPFEGANIEQAAIEFNG 78

Query: 65  IT-----------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR- 112
           I            +E +K+      +  +       Q +  +AHNA FD GF+NA ++R 
Sbjct: 79  IEPFSALRGAVPEEEAIKE---ICKVVRKAQKAAGCQRSVVVAHNAAFDHGFLNAAIERN 135

Query: 113 -INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            I + P  P    DT S+A       +  L   C+  GI   ++  H AL D+   +++Y
Sbjct: 136 NIKRTPFHPFVSFDTTSLAGLA--LGQTVLAKACRAAGIEFDNKQAHSALYDTERTAELY 193

Query: 172 IKMM 175
             ++
Sbjct: 194 CLIV 197


>gi|255038895|ref|YP_003089516.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
           18053]
 gi|254951651|gb|ACT96351.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
           18053]
          Length = 174

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 9/151 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG      RI EI AV   D ++    F   + P      P   +L GI +E +
Sbjct: 4   IVDIETTG-GGGTSRITEI-AVFRHDGARIVDFFHSLINPE-IYIPPFITRLTGIDNEMV 60

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD P+F  +          ++A ++AHNAKFD GFI  E   +  D      ++ T+ ++
Sbjct: 61  KDAPTFYEVQDAVRAM--TRDAWFVAHNAKFDYGFIKREFGAL--DEYFQRDLLCTVQLS 116

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK-HG 159
           R+  P  ++  L +LC+   I I +R + HG
Sbjct: 117 RKIFPGLKSYSLGNLCESLEIMIENRHRAHG 147


>gi|146311450|ref|YP_001176524.1| ribonuclease T [Enterobacter sp. 638]
 gi|166991090|sp|A4W9U3|RNT_ENT38 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|145318326|gb|ABP60473.1| RNAse T [Enterobacter sp. 638]
          Length = 224

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLTPDTTLHFHVDPFEGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +I+        + N   A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPHNPLRGAVSEYDALHAIYKMVRKGMKDSNCNRAIMVAHNATFDHSFMMAASERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   GI       H AL D+   ++++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACITAGIDFDGNQAHSALYDTERTAELFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|166711531|ref|ZP_02242738.1| ribonuclease T [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 211

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 17/181 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCPN-GRKNSPEALKLH 63
            +V D+ET G DS    ++EI  V + +D         T    L P  G +  P++L++ 
Sbjct: 25  PVVVDVETGGFDSNKHALLEIACVPIEMDADGRFFPGDTASAHLVPAPGLEIEPKSLEIT 84

Query: 64  GITDEFL-----KDKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +       ++K +   +F+        +  Q A  + HNA FD+ F+NA + R+  
Sbjct: 85  GIVLDHPFRLAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 144

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ K
Sbjct: 145 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCK 202

Query: 174 M 174
           +
Sbjct: 203 I 203


>gi|288803395|ref|ZP_06408828.1| exonuclease [Prevotella melaninogenica D18]
 gi|288334215|gb|EFC72657.1| exonuclease [Prevotella melaninogenica D18]
          Length = 284

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 9/141 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGLD  NDRII+I  +++    K  R   +F+ P  +    E   L GI+D  
Sbjct: 10  IVFDLETTGLDLVNDRIIQISFIKVHPDGKEERE-NIFINPE-KPIPAEVTLLTGISDAD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127
           + D P+F     +  D F     ++  +N+ +FDV  +  E  R   D      R+ID  
Sbjct: 68  VADAPTFKQKAKDLSDKF--AGCDFAGYNSNRFDVPMLAEEFLRAGVDFDFSKCRLIDAQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
           +I    H   R +L +  K Y
Sbjct: 126 NIY---HKMERRNLAAAYKFY 143


>gi|282878677|ref|ZP_06287446.1| exonuclease [Prevotella buccalis ATCC 35310]
 gi|281299222|gb|EFA91622.1| exonuclease [Prevotella buccalis ATCC 35310]
          Length = 284

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 11/142 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           IVFD+ETTGLD   DRII+I  +++    K  R     +  N  KN P E   L GIT+E
Sbjct: 10  IVFDLETTGLDLVKDRIIQISYIKVFPDGKEERE---NILVNPEKNIPLEVSALTGITNE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD-PLDPSRIIDT 126
            + D P F  I  +  + F  +  ++  +N+  FD+  +  E  R   D     S ++D 
Sbjct: 67  DVADAPKFQDIAQKLAEEF--KGCDFAGYNSNHFDIPILAEEFLRAGIDFDFSKSNLVDA 124

Query: 127 LSIARRKHPSSRNDLNSLCKRY 148
            +I    H   R +L +  K Y
Sbjct: 125 QAIF---HKMERRNLAAAYKFY 143


>gi|261339587|ref|ZP_05967445.1| ribonuclease T [Enterobacter cancerogenus ATCC 35316]
 gi|288318408|gb|EFC57346.1| ribonuclease T [Enterobacter cancerogenus ATCC 35316]
          Length = 216

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 22/195 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLTPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  +      + +  +  +IF        + +   A  +AHNA FD  F  A  +R  + 
Sbjct: 80  IDPKNPLRGAVSEYDALHAIFKMVRKGMKDNDCSRAIMVAHNATFDHSFTMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   GI       H AL D+   ++++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACITAGIEFDGTQAHSALYDTERTAELFCEI 197

Query: 175 M-----VGGSQINFG 184
           +     +GG  +  G
Sbjct: 198 VNRWKRLGGWPLPMG 212


>gi|239986791|ref|ZP_04707455.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           11379]
 gi|291443743|ref|ZP_06583133.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
 gi|291346690|gb|EFE73594.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 343

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 12/187 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRII      L         +   + P   +  P  + +HG+T + L
Sbjct: 23  VVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNP---ERDPGPVWIHGLTSDVL 78

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSI 129
           +  P F  +  E      ++    +AHNA FD   I  E  R +   P++  + + T+++
Sbjct: 79  EGAPLFPEVAEELSARLADRV--LVAHNAAFDWSMIAREYARASVVAPVE--QRLCTIAL 134

Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           A+  + P   + L SL   +G+    +  H AL D+ +L++ +   +   ++        
Sbjct: 135 AKELRLPLPNHKLASLAAHFGVV--QQQAHHALDDARVLAEAFRPSLHAAARGGVRLPLL 192

Query: 189 EDRFFKE 195
           E R   E
Sbjct: 193 ECRPLTE 199


>gi|167771957|ref|ZP_02444010.1| hypothetical protein ANACOL_03330 [Anaerotruncus colihominis DSM
           17241]
 gi|167665755|gb|EDS09885.1| hypothetical protein ANACOL_03330 [Anaerotruncus colihominis DSM
           17241]
          Length = 270

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 10/134 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-----TNRTFQVFLCPNGRKNSPEALKLHG 64
           I+FD ET+GLD   D+IIE+ A+ +   +        +  Q    P G++ + + ++L G
Sbjct: 39  ILFDTETSGLDFDKDQIIELAALRIEQTAAKGLRIAGQMDQFIRLPEGQQLTEKIVELTG 98

Query: 65  ITDEFLK-DKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPS 121
           ITD  L+ +  +     + F    N  +     +AHNA+FD+ F+ + L+ +   P    
Sbjct: 99  ITDRILEAEGVAPHKAATAFAKLINAGDGPVLLVAHNAQFDLLFVRSLLKGVKLAP--RL 156

Query: 122 RIIDTLSIARRKHP 135
             +DTL++ + + P
Sbjct: 157 EFLDTLTVYKDRRP 170


>gi|169827550|ref|YP_001697708.1| ATP-dependent helicase dinG [Lysinibacillus sphaericus C3-41]
 gi|168992038|gb|ACA39578.1| Probable ATP-dependent helicase dinG [Lysinibacillus sphaericus
           C3-41]
          Length = 923

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 12/131 (9%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           + D+ETTG    N DR+I+I  V + D+ +  RT+  F+ P   K  P  ++ L  IT+E
Sbjct: 9   IVDLETTGHSPANGDRMIQIAIVIMKDW-EIERTYTKFINPG--KAIPTFIQDLTHITNE 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +KD    S  F E  D+  E  A+  ++AHNA FD+ F+ AE +R    P    + +DT
Sbjct: 66  DVKD----SYPFEEHADYIYELLADCVFVAHNADFDLSFLQAEFKRAGL-PKWQGKKMDT 120

Query: 127 LSIARRKHPSS 137
           + +A+   P S
Sbjct: 121 VELAKILFPMS 131


>gi|239940309|ref|ZP_04692246.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 341

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 12/187 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRII      L         +   + P   +  P  + +HG+T + L
Sbjct: 21  VVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNP---ERDPGPVWIHGLTSDVL 76

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSI 129
           +  P F  +  E      ++    +AHNA FD   I  E  R +   P++  + + T+++
Sbjct: 77  EGAPLFPEVAEELSARLADRV--LVAHNAAFDWSMIAREYARASVVAPVE--QRLCTIAL 132

Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           A+  + P   + L SL   +G+    +  H AL D+ +L++ +   +   ++        
Sbjct: 133 AKELRLPLPNHKLASLAAHFGVV--QQQAHHALDDARVLAEAFRPSLHAAARGGVRLPLL 190

Query: 189 EDRFFKE 195
           E R   E
Sbjct: 191 ECRPLTE 197


>gi|217970527|ref|YP_002355761.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|217507854|gb|ACK54865.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 203

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D ETTGL  ++ DR  EI AV + D    +R +Q  +  N     P  ++ L GIT+ 
Sbjct: 6   VIDFETTGLSPAQGDRATEIAAVIVEDGRVVDR-YQSLM--NAGVRIPAYIEALTGITNA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            ++  P    +  +  DF  +     +AHNA FD  F +AEL RI ++
Sbjct: 63  MVRSAPLAGEVMRDVSDFVGDM--PIVAHNASFDAKFWDAELGRIQRN 108


>gi|225010791|ref|ZP_03701259.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium
           MS024-3C]
 gi|225004999|gb|EEG42953.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium
           MS024-3C]
          Length = 204

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 17/166 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEALKLHGITD 67
           IV D ETTG D + +RI+ IGAV LL+ S+     +F+V+L  +   NS ++  +HGI  
Sbjct: 20  IVIDTETTGFDYEKERILCIGAV-LLEKSQIAVKDSFEVYLTQD-HYNS-DSTPIHGILK 76

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E  K+K +       F  +    NA  IAH+  FDV  IN  L R    P   ++++DT+
Sbjct: 77  EEKKEKTAEIEALKSFLTYIG--NAPIIAHHTMFDVNMINKALHR-QGLPSLKNKLLDTV 133

Query: 128 SIARRKHPSS-------RNDLNSLCKRYGITISHRSKHGALLDSHL 166
            + ++    S          L+ L  ++   IS + +H AL D+++
Sbjct: 134 VLYKKSLLRSPLIEKKDHYSLDELADKFN--ISKKDRHTALGDAYI 177


>gi|256390076|ref|YP_003111640.1| exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
 gi|256356302|gb|ACU69799.1| Exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
          Length = 204

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 7/160 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G       I+E+  V +    +   ++   L P G      A ++HGIT E +
Sbjct: 14  VVDVETSGFQPPIAEILEVAIVHVDATGQVTGSWDSLLRPQGGVG---ATRVHGITREMV 70

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  +  E      ++    +AHN  FD  F+  +  R+     + +    TL  +
Sbjct: 71  EPAPRFEDVGMELHGLLVDRVV--VAHNLAFDAKFLVTQFARLGVHSPEIAGGACTLRTS 128

Query: 131 RRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLS 168
           +   P     L   C+  G+  T +H +   AL  + LL 
Sbjct: 129 QAMLPGPSYKLLDCCEAVGVELTDAHSALGDALATARLLG 168


>gi|312864644|ref|ZP_07724875.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei
           F0415]
 gi|311099771|gb|EFQ57984.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei
           F0415]
          Length = 823

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 21/181 (11%)

Query: 1   MIRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K + RK  V D+E T   S   +II++G V +++  +  +T+Q  + P+      EA
Sbjct: 1   MTDKKQGRKYAVVDLEATSA-STTAQIIQVGIV-IVEQGQIVQTYQTDVNPH------EA 52

Query: 60  LKLH-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           L  H     GITD+ L   P FS +  + +     Q+  ++AHN KFD   +  +L    
Sbjct: 53  LTQHIIDLTGITDQQLAQAPDFSQVAGDIFQLI--QDCIFVAHNVKFDANLLAEQLFLEG 110

Query: 115 KDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +   P   +DT+ +++   P+  R  L+ L K   + ++H   H A+ D++  + + I 
Sbjct: 111 YELRTPR--VDTVELSQVFFPTLERYRLSDLAKYLDLDLTH--AHTAIADAYATAQLLIS 166

Query: 174 M 174
           +
Sbjct: 167 I 167


>gi|240173340|ref|ZP_04751998.1| DNA polymerase III subunit epsilon [Mycobacterium kansasii ATCC
           12478]
          Length = 329

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII I  + L    +  ++    L P      P +  +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISIAVLGLDADGRVEQSLVSLLNPG---VDPGSTHIHGLTAGML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
           +D+P F+ I  +  +    +    +AHN  FD  F+ AE +    + P+D   ++ T+ +
Sbjct: 75  EDQPQFADIVGDVVELLRGRTL--VAHNVAFDYAFLAAEAEMAGAELPVD--TVMCTVEL 130

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +RR      N  L +L   +G+ I  R  H A  D+ +L+ V    +
Sbjct: 131 SRRLELGVDNLRLETLAAHWGV-IQER-PHDAFDDARVLTGVLAAAL 175


>gi|238762495|ref|ZP_04623465.1| Ribonuclease T [Yersinia kristensenii ATCC 33638]
 gi|238699140|gb|EEP91887.1| Ribonuclease T [Yersinia kristensenii ATCC 33638]
          Length = 226

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 22/195 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVEPFEGANLQPEALAFNG 90

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        ++    A  +AHNA FD  F+ A  +R  + 
Sbjct: 91  IDPSNPLRGAVSEHDALHAIFKAVRKGLKDKGCNRAIIVAHNAHFDHSFVMAAAERASLK 150

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ ++
Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCEL 208

Query: 175 M-----VGGSQINFG 184
           +     +GG  +  G
Sbjct: 209 VNRWKKLGGWPVPAG 223


>gi|29833361|ref|NP_827995.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
           MA-4680]
 gi|29610484|dbj|BAC74530.1| putative DNA polymerase III epsilon subunit [Streptomyces
           avermitilis MA-4680]
          Length = 241

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 13/154 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D + DRI+   AV + D          +L   G      A  +HG+TDE L
Sbjct: 11  AFDTETTGVDVETDRIVS-AAVVVQDAPGARPRVSRWLVNPGVPVPAGATAVHGLTDEHL 69

Query: 71  KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLD------P 120
           +    + S +  E      EQ       +  NA FD+  ++ EL+R     LD      P
Sbjct: 70  QRNGRWPSPVMDEIARELGEQATAGRPLVVMNAPFDLTLLDRELRRHRASCLDHWFESAP 129

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
            R++D   + +   ++   R  L  LC  Y + +
Sbjct: 130 LRVLDPRVLDKHLDRYRKGRRTLTDLCAHYDVAL 163


>gi|296133462|ref|YP_003640709.1| DnaQ family exonuclease/DinG family helicase [Thermincola sp. JR]
 gi|296032040|gb|ADG82808.1| DnaQ family exonuclease/DinG family helicase [Thermincola potens
           JR]
          Length = 994

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 15/157 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIETTGL+  +  IIE+ AV   +  +   TFQ  + P  +K   +  +L GI +  
Sbjct: 7   VAVDIETTGLNPADSEIIEVAAVRFAE-GRVLETFQSLVKPE-KKIPLKIQQLTGINESM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTLS 128
           + D P+ + +     +F ++     I HN  FD+ F+       +  P+   +R  DTL 
Sbjct: 65  VADAPACAEVTGMLAEFVHDSII--IGHNIGFDLNFLQ------HYHPVFIRARYYDTLP 116

Query: 129 IARRKHPSSRN-DLNSLCKRYGITIS---HRSKHGAL 161
           +AR   P +    L +L +   I ++   HR+ H AL
Sbjct: 117 LARLVWPKAHGYRLANLVEALKIQLNGSPHRAFHDAL 153


>gi|157736758|ref|YP_001489441.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|315635934|ref|ZP_07891196.1| exonuclease [Arcobacter butzleri JV22]
 gi|157698612|gb|ABV66772.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|315479913|gb|EFU70584.1| exonuclease [Arcobacter butzleri JV22]
          Length = 202

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 19/175 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD ETTGL+ K D II IGAV + D +  +++ F  F+ P  +  + EA+K+H I + 
Sbjct: 33  VCFDCETTGLNPKKDDIISIGAVIIKDNTIISSKKFVKFIKPKTKLQA-EAIKVHHIREC 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +      +  EF +F    N   + +  +FD+  IN  L    K  L  +    TL 
Sbjct: 92  DLNNANDIDLVIEEFLEFIG--NRTLVGYFLEFDISMINKYL----KPKLGITLPNKTLE 145

Query: 129 IARRKH-------PSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++   H       P    DL  NS+ +   + I    KH A  D+ + + ++IK+
Sbjct: 146 VSEIYHDYKIEIIPQGHIDLRFNSIMEE--LEIPSLGKHDAFNDALMTAMIFIKL 198


>gi|309790215|ref|ZP_07684787.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
 gi|308227800|gb|EFO81456.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
          Length = 935

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 15/168 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           +  D+ETTGL +  D IIE  AV+  D     R F   + P  R+  P +  +L GIT +
Sbjct: 7   VALDVETTGLQAGIDEIIEFAAVKFRDGEILER-FSQLIAP--RQPLPLKITRLTGITAQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P F+ +  +   F   ++   + H+  FD+G + A+     +       + DT  
Sbjct: 64  DLADAPHFNDVGGKIAGFI--KSYPLVGHSINFDLGMLRAQGMNFTQP------VYDTFD 115

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A    P  +   L ++  R G  I H   H AL D+ + + V+  ++
Sbjct: 116 LATILMPQIAVYKLGAIADRLG--IPHPDDHRALNDAEVTAHVFTHLL 161


>gi|153829541|ref|ZP_01982208.1| ribonuclease T [Vibrio cholerae 623-39]
 gi|148875001|gb|EDL73136.1| ribonuclease T [Vibrio cholerae 623-39]
          Length = 243

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D +       T    + P  G      AL+  G
Sbjct: 39  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   S      E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 99  IYDPFSPLRGAVSEDHALKEIYRLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++       +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 159 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 216

Query: 174 MM 175
           ++
Sbjct: 217 IV 218


>gi|306833904|ref|ZP_07467028.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis
           ATCC 700338]
 gi|304423905|gb|EFM27047.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis
           ATCC 700338]
          Length = 827

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 90/175 (51%), Gaps = 10/175 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++ N  +  + D+E TG  +  + II++G V +++  +  +T+Q  + P+    S   +
Sbjct: 1   MMQVNSQKYAIVDLEATGAHAMAE-IIQVGIV-IIENDEIVKTYQTDVNPH-EALSEHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITDE L   P FS +  E ++    ++  ++AHN KFD   +  +L     +   P
Sbjct: 58  NLTGITDEQLAKAPDFSQVAQEIFNLI--EDCVFVAHNVKFDANLLAEQLFMEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +L     + ++    H A+ D++  + +++K+
Sbjct: 116 R--VDTVELAQVFYPTFEKYSLGNLADVLALDLA--DAHTAISDAYATAQLFLKL 166


>gi|296119762|ref|ZP_06838316.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295966916|gb|EFG80187.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 1149

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 11/160 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D E TGL S  DRI+EIG V L +  +  +T+   + PN  +  P +  +H +T   L
Sbjct: 9   VVDFEATGL-SAADRIVEIGVVLLDNNLEVEQTWDTLVQPN--REVPNSF-VHKLTTADL 64

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
           +  P+F  I ++F    + +    +AHNA F+  F+  E  R+    P   S IIDT  +
Sbjct: 65  EKAPTFEGISAKFASLLDGRTV--VAHNASFEEHFMRQEFSRLGVLWPNYGSWIIDTAVL 122

Query: 130 ARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLL 167
           + +    +++    +    GI     H++  GA+  + LL
Sbjct: 123 SEKFL--NKSQFQEVLAAAGIINKNPHQALSGAMATADLL 160


>gi|296876164|ref|ZP_06900218.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit
           [Streptococcus parasanguinis ATCC 15912]
 gi|296432875|gb|EFH18668.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit
           [Streptococcus parasanguinis ATCC 15912]
          Length = 817

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 90/175 (51%), Gaps = 11/175 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M R+ +   IV D+E T   S N +II++G V +++  +  ++++  + P+ R +     
Sbjct: 1   MTRQKRKYAIV-DLEATSAGS-NAKIIQVGIV-IIEDGRITQSYETDVNPHERLDE-HIK 56

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+TD  L+  P F+ +  E ++    ++A ++AHN KFD   +   L     +   P
Sbjct: 57  QLTGLTDARLRKAPEFAQVAKEIFELI--EDAVFVAHNVKFDANLLAEALFWEGFELTTP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              IDT+ +++  +P+  R +L +L     I + H   H AL D+   + + +K+
Sbjct: 115 R--IDTVELSQIFYPTLERYNLGALAAELEIELHH--AHSALADAMATAQLLLKL 165


>gi|262402653|ref|ZP_06079214.1| ribonuclease T [Vibrio sp. RC586]
 gi|262351435|gb|EEZ00568.1| ribonuclease T [Vibrio sp. RC586]
          Length = 224

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D +       T    + P  G      AL+  G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   +      E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 80  IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++       +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTAALSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|261211954|ref|ZP_05926240.1| ribonuclease T [Vibrio sp. RC341]
 gi|260838562|gb|EEX65213.1| ribonuclease T [Vibrio sp. RC341]
          Length = 224

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D +       T    + P  G      AL+  G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   +      E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 80  IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++       +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTAALSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|332073070|gb|EGI83549.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Streptococcus pneumoniae GA17570]
          Length = 168

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|302554712|ref|ZP_07307054.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
 gi|302472330|gb|EFL35423.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
          Length = 623

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 13/207 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALKLHGITDE 68
           + D+ET+GL    DR++ + A+  LD ++ N+T  F   L P      P  + +HG+T  
Sbjct: 34  LVDVETSGLRPGRDRVLSL-AILTLD-ARGNQTGEFATLLNPG---CDPGPVHIHGLTPA 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P+F  I  +     + +    +AHNA+FD  F+  E   + +  +  SR + TL+
Sbjct: 89  RLAGAPTFEEIAPQVGALLSGR--VLVAHNAQFDYDFLAHEFAHV-RSWVPVSRRLCTLA 145

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           + R    ++ +  L +L   YG  +     H A  D  +LS +    +    ++      
Sbjct: 146 LNRLVGSATPDLKLGTLAAHYG--VRQERAHDAQDDVRVLSGILRGSLGAAERLGLSLPL 203

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFT 214
            +    ++ +  VP      R+   FT
Sbjct: 204 LDCPPRQDYQPYVPKTPCAYRNPGRFT 230


>gi|330684981|gb|EGG96656.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU121]
          Length = 902

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +        P    L  I + 
Sbjct: 8   VVDLETTGNQLDYDDIIQIG----ITFVRQNKIIGTYHSMIRTDLDIPPFIQALTSIEET 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  + +     Q+  ++AHN  FD+ FI    +  N     P R++DTL 
Sbjct: 64  MLEQAPYFKEIAQDIYQ--QLQDCVFVAHNVAFDLNFIKKAFKNCNI-KYRPKRVMDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           + +   P+ ++  L+ L + + I +  +HR+   A   +HL+
Sbjct: 121 LFKIAFPTDKSYQLSELAEAHDIPLNNAHRADEDATTTAHLM 162


>gi|258622020|ref|ZP_05717049.1| ribonuclease T [Vibrio mimicus VM573]
 gi|258627109|ref|ZP_05721905.1| ribonuclease T [Vibrio mimicus VM603]
 gi|262171988|ref|ZP_06039666.1| ribonuclease T [Vibrio mimicus MB-451]
 gi|258580627|gb|EEW05580.1| ribonuclease T [Vibrio mimicus VM603]
 gi|258585773|gb|EEW10493.1| ribonuclease T [Vibrio mimicus VM573]
 gi|261893064|gb|EEY39050.1| ribonuclease T [Vibrio mimicus MB-451]
          Length = 224

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D +       T    + P  G      AL+  G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 65  ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113
           I D F  L+   +      E +     EQ A        +AHNA FD  F+ A  +R  +
Sbjct: 80  IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++       +  L   CK  G+   +R  H AL D+   ++++  
Sbjct: 140 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 197

Query: 174 MM 175
           ++
Sbjct: 198 IV 199


>gi|52424757|ref|YP_087894.1| ribonuclease T [Mannheimia succiniciproducens MBEL55E]
 gi|52306809|gb|AAU37309.1| DnaQ protein [Mannheimia succiniciproducens MBEL55E]
          Length = 223

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 20/192 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCP-NGR 53
           + KN+ R    ++ D+ET G ++K D ++E+ A+ L +D +     ++     + P  G 
Sbjct: 19  LLKNRFRGYYPVIIDVETAGFNAKTDALLELAAITLKMDENGLLVPDQKCHFHIKPFEGA 78

Query: 54  KNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFF--NEQNAEW-----IAHNAKFDVGF 105
             +PE++K +GI  D  L+     S   +  +      ++NA       +AHNA FD  F
Sbjct: 79  NINPESIKFNGIDIDNPLRGAVPESEAITGLFQMVRKGQKNAGCQRSIIVAHNATFDQSF 138

Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A   R  I ++P  P    DT S++       +  L   C+   I    +  H AL D
Sbjct: 139 VMAAADRTKIKRNPFHPFSSFDTASLSGLMF--GQTVLVKACQAAHIAFDGKQAHSALYD 196

Query: 164 SHLLSDVYIKMM 175
           +   ++++  M+
Sbjct: 197 TERTAELFCYMV 208


>gi|326772455|ref|ZP_08231739.1| DNA polymerase III, epsilon subunit [Actinomyces viscosus C505]
 gi|326637087|gb|EGE37989.1| DNA polymerase III, epsilon subunit [Actinomyces viscosus C505]
          Length = 280

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 14/149 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEF 69
           V D+ETTGL    D I+E+  V      +  R++   + P  G    P    +HG+  E 
Sbjct: 44  VVDLETTGLSPTTDSILEVALVLTDAAGRVERSWSTLIDPGAGVDVGP--THIHGLVAEE 101

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLS 128
           L   P F  +        +      +AHNA+FDVGF+  EL    +  LD  +R+    +
Sbjct: 102 LIGAPGFDEVADLL--VADLAGRAVVAHNARFDVGFLTQELG--TRGLLDRGARVPRVCT 157

Query: 129 IARRKH----PSSRNDLNSLCKRYGITIS 153
           +   +H    PS R  L + C+  G+ I 
Sbjct: 158 MEWARHFMTTPSRR--LTTCCEVAGVEIG 184


>gi|163751265|ref|ZP_02158493.1| ribonuclease T [Shewanella benthica KT99]
 gi|161328979|gb|EDQ00053.1| ribonuclease T [Shewanella benthica KT99]
          Length = 225

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G + + D ++EI AV +L          ++T    + P  G    P+AL  +
Sbjct: 20  VVIDVETAGFNCQTDALLEI-AVTMLKMDDEGILSLDKTLHYHIEPFEGANLEPDALAFN 78

Query: 64  GI--TDEF---LKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI  T+     + +K +F  IF E            +  +AHNA FD GF++  ++R  +
Sbjct: 79  GIDPTNPLRGAVSEKEAFLEIFKEVKKAQKAVGCHRSIIVAHNAAFDHGFVSKAIERCAL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++          L   C   GI   +   H AL D+   ++++  
Sbjct: 139 KRTPFHPFATFDTAALSGLA--LGHTVLAKACSIAGIDFDNSEAHSALYDTERTAELFCH 196

Query: 174 MM 175
           ++
Sbjct: 197 IV 198


>gi|241896118|ref|ZP_04783414.1| DNA-directed DNA polymerase III epsilon subunit [Weissella
           paramesenteroides ATCC 33313]
 gi|241870632|gb|EER74383.1| DNA-directed DNA polymerase III epsilon subunit [Weissella
           paramesenteroides ATCC 33313]
          Length = 970

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 7/134 (5%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLH 63
           NK    V D+ETT   S++ RII+I A+  +   K    F   + P+  ++ P   ++L 
Sbjct: 30  NKDIYAVVDLETTRTTSESGRIIQI-AIAFVQNKKIINQFSTLINPH--ESIPRNVVQLT 86

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI  E +   PSF  +              ++AHN  FD+ F+NAE QRI  + L+    
Sbjct: 87  GINAEMVAGAPSFEEVAESIHTMLT--GTIFVAHNVNFDLPFLNAEFQRIGMNTLNLV-A 143

Query: 124 IDTLSIARRKHPSS 137
           IDT+++++   P++
Sbjct: 144 IDTVTLSQIVWPTA 157


>gi|258511090|ref|YP_003184524.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477816|gb|ACV58135.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 240

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R ++ R +V D ETTGL   + R++E+  VE+    +    +   + P G    PEA  
Sbjct: 1   MRLSEARFVVIDTETTGL-PPDGRVVELALVEVGLDREPQIVYSALVDP-GCPIPPEASA 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           +H ITD  +  KP    I+ +   +    +A  +AHNA+FD G +
Sbjct: 59  VHHITDRDVAGKPRLMQIWPKVMGYIG--DAILVAHNAEFDRGML 101


>gi|77460741|ref|YP_350248.1| ribonuclease T [Pseudomonas fluorescens Pf0-1]
 gi|123603449|sp|Q3K7J7|RNT_PSEPF RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|77384744|gb|ABA76257.1| ribonuclease T [Pseudomonas fluorescens Pf0-1]
          Length = 224

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI A  +      +   + T+   + P  G    P AL+  G
Sbjct: 32  VVVDVETGGFNSATDALLEIAATTIAMDEKGFVYPDHTYFFRVEPFEGANVEPAALEFTG 91

Query: 65  I-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114
           I  D  L+    ++ + + IF              A  + HN+ FD+GF+NA + R++  
Sbjct: 92  IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 151

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+   I    R  H A  D+   ++++  +
Sbjct: 152 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAADIDFDGREAHSARYDTEKTAELFCGI 209

Query: 175 M 175
           +
Sbjct: 210 V 210


>gi|315290558|gb|EFU49932.1| ribonuclease T [Escherichia coli MS 153-1]
          Length = 215

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112
           I D    D+ + S  +    + F              A  +AHNA FD  F+ A  +R  
Sbjct: 80  I-DPSDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 137

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   + ++ 
Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195

Query: 173 KMM 175
           +++
Sbjct: 196 EIV 198


>gi|293380779|ref|ZP_06626825.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Lactobacillus crispatus 214-1]
 gi|290922665|gb|EFD99621.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Lactobacillus crispatus 214-1]
          Length = 318

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 11/158 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--KLHGITDE 68
           + DIETTGL    DRIIE+G V++ +    ++     L    + NS  A   KL+GIT+E
Sbjct: 35  MLDIETTGLYPYRDRIIELGGVKVRNGQIVDQYTN--LVKFSKNNSVPAFITKLNGITEE 92

Query: 69  -FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +K+         EF +F  +     I +N  FD+ F+    Q+     LD +  +D L
Sbjct: 93  QIVKEGIPAEQAIREFREFIGDD--VIIGYNVNFDLNFLYDLSQKYGLPVLD-NDYVDVL 149

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164
            +AR  +P  R N L    +R G  I+    H  L DS
Sbjct: 150 RLARTYYPRERHNRLLDCMQRAG--IAQVEAHHGLQDS 185


>gi|163939458|ref|YP_001644342.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus weihenstephanensis KBAB4]
 gi|163861655|gb|ABY42714.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           weihenstephanensis KBAB4]
          Length = 934

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+      +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPLFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DENLVKQAPLFRDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEVHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|305680841|ref|ZP_07403648.1| exonuclease, DNA polymerase III, epsilon subunit family protein
            [Corynebacterium matruchotii ATCC 14266]
 gi|305659046|gb|EFM48546.1| exonuclease, DNA polymerase III, epsilon subunit family protein
            [Corynebacterium matruchotii ATCC 14266]
          Length = 2479

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 9/155 (5%)

Query: 11   VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            V D+ETTG  S  DRI+E+  V L D  +    +   + P  R  S  A+  HGIT + +
Sbjct: 2087 VVDVETTGF-STADRIVELAIVVLDDDGENLYEWSTLINPM-RDISNGAI--HGITAKDV 2142

Query: 71   KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSI 129
               P+F  +  +       +   ++AHNA FDV  + +E  R+  K        IDTL +
Sbjct: 2143 AVAPTFDQVADDVAALL--EGKIFVAHNAIFDVRMLKSEFDRVGLKMAGLADGHIDTLRL 2200

Query: 130  ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            A+   P S   L+S     GIT  +   H AL D+
Sbjct: 2201 AQNSLPISSRSLDSCLAFMGIT--NEQAHSALSDA 2233


>gi|225021279|ref|ZP_03710471.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC
            33806]
 gi|224946012|gb|EEG27221.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC
            33806]
          Length = 2493

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 9/155 (5%)

Query: 11   VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            V D+ETTG  S  DRI+E+  V L D  +    +   + P  R  S  A+  HGIT + +
Sbjct: 2101 VVDVETTGF-STADRIVELAIVVLDDDGENLYEWSTLINPM-RDISNGAI--HGITAKDV 2156

Query: 71   KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSI 129
               P+F  +  +       +   ++AHNA FDV  + +E  R+  K        IDTL +
Sbjct: 2157 AVAPTFDQVADDVAALL--EGKIFVAHNAIFDVRMLKSEFDRVGLKMAGLADGHIDTLRL 2214

Query: 130  ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            A+   P S   L+S     GIT  +   H AL D+
Sbjct: 2215 AQNSLPISSRSLDSCLAFMGIT--NEQAHSALSDA 2247


>gi|311279254|ref|YP_003941485.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae
           SCF1]
 gi|308748449|gb|ADO48201.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae
           SCF1]
          Length = 219

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 27/167 (16%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET  L      ++EI +V+++D   TN      + P+ R  SP+A+ +H IT+E +
Sbjct: 4   VIDTETCDLQGG---VVEIASVDIVDGKITN-PMSHLIRPD-RPISPQAMAIHRITEEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   +     + +A ++AHNA FD       L  +N +       I T+ +A
Sbjct: 59  ADKPWIEEVVPLY-----QGSAWYVAHNASFD----RRVLPEMNGE------WICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITIS-------HRSKHGALLDSHLLSDV 170
           RR  P  +    +L K   ++++       HR+ +   + + LL D+
Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVATPPGLHHHRALYDCYITAALLIDI 150


>gi|229010951|ref|ZP_04168147.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM
           2048]
 gi|229132450|ref|ZP_04261304.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST196]
 gi|228651156|gb|EEL07137.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST196]
 gi|228750351|gb|EEM00181.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM
           2048]
          Length = 934

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+      +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPLFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +   + ID
Sbjct: 62  DENLVKQAPLFRDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEVHCPK-ID 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|229544028|ref|ZP_04433087.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans
           36D1]
 gi|229325167|gb|EEN90843.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans
           36D1]
          Length = 930

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 11/171 (6%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D+ETTG  +K  DRII+  AV +++  +    F  F+ P  +   P   +L GI 
Sbjct: 3   RYVVVDLETTGNSAKKGDRIIQFSAV-VVEGREIKTQFTSFVNPE-KPVPPFISELTGID 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
           +  L++ P FS I     +    +++ ++AHN  FD+ F+  EL+     P   PS  +D
Sbjct: 61  NGMLEEAPVFSEIAPRIMEIL--EDSIFVAHNVLFDLPFLQQELKAAGFPPFRGPS--LD 116

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+  +R   P+ +   L  L     +++ H   H A  D+ + + + +  M
Sbjct: 117 TVEFSRIAFPTLNSYKLGDLAD--SLSLYHERPHRADSDAFVTAKLLLACM 165


>gi|271500216|ref|YP_003333241.1| ribonuclease T [Dickeya dadantii Ech586]
 gi|270343771|gb|ACZ76536.1| ribonuclease T [Dickeya dadantii Ech586]
          Length = 226

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 22/201 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L +D S   + + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDDTLHFHIEPFEGAILRPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +   IF        +QN   A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPSNPLRGAVSEYDALHDIFKAVRKGIKDQNCNRAIIVAHNATFDHSFLMAAAERCGLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C    I       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACIAAEIPFDASQAHSALYDTERTAQLFCEL 197

Query: 175 M-----VGGSQINFGFKTNED 190
           +     +GG  +       ED
Sbjct: 198 VNRWKRMGGWPLAGAVGDTED 218


>gi|51893409|ref|YP_076100.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857098|dbj|BAD41256.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 390

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 6/168 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGL+    RII+IG V + +  +  +T++  L     + S  A++++ +    
Sbjct: 25  VVIDTETTGLEYDQHRIIQIGVVAIKE-QRIVKTWESKLRLIDGEVSAYAMQVNRLDPSD 83

Query: 70  LKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           ++ +  P   ++  +  + F        AHN  FD+GF+ AE  R +  P      +D++
Sbjct: 84  MRSEKYPHPKAVLRKLQEEFLRPGVLLGAHNLSFDLGFLQAEFAR-HGLPQWQGNFVDSM 142

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++ R   P     L SL + + + ++    H AL D+   + V + ++
Sbjct: 143 ALGRALLPDLSASLESLARHFRVELT--QHHDALADAVATAHVLLHLL 188


>gi|189499454|ref|YP_001958924.1| Exonuclease RNase T and DNA polymerase III [Chlorobium
           phaeobacteroides BS1]
 gi|189494895|gb|ACE03443.1| Exonuclease RNase T and DNA polymerase III [Chlorobium
           phaeobacteroides BS1]
          Length = 159

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 6/112 (5%)

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E LKDKP    +  EF  F  + N   +AHNA FD  F+++EL+R N+         
Sbjct: 8   ITNEMLKDKPCCEEVMLEFSGFIADHNI--VAHNASFDRRFLDSELKRANRK--YEGSCC 63

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +L ++RR +  S N  L +L    GI  +  + H AL D+ + + +++ M+
Sbjct: 64  CSLLLSRRVYQDSPNHTLQTLVSHAGIPETG-TFHRALADAEMTAYLWLSMI 114


>gi|284925719|gb|ADC28071.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 256

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 9/145 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           + DIE+TG  SK + I+EIGAV++ +  +  R FQ F+     K  P+ + +L GIT E 
Sbjct: 74  IVDIESTGGVSKGE-ILEIGAVKIQNSKEIGR-FQSFV---KVKEIPKNITELTGITYEM 128

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++  S + + S+F  F   +++ ++AHN +FD  FI+  L       L   RI  T+  
Sbjct: 129 VENASSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 185

Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154
           A+    S +  L  L +  G+  +H
Sbjct: 186 AQCCIESPKYKLEVLKEFLGVENTH 210


>gi|302345413|ref|YP_003813766.1| exonuclease [Prevotella melaninogenica ATCC 25845]
 gi|302149990|gb|ADK96252.1| exonuclease [Prevotella melaninogenica ATCC 25845]
          Length = 284

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 9/141 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGLD  NDRII+I  +++    K  R   +F+ P  +    E   L GI+D  
Sbjct: 10  IVFDLETTGLDLVNDRIIQISFIKVHPDGKEERE-NIFINPE-KPIPAEVTLLTGISDAD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127
           + D P+F     +  D F     ++  +N+ +FDV  +  E  R   D      R+ID  
Sbjct: 68  VADAPTFKQKAKDLSDKF--AGCDFAGYNSNRFDVPMLAEEFLRAGVDFDFSKCRLIDAQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
           +I    H   R +L +  K Y
Sbjct: 126 NIY---HKMERRNLAAAYKFY 143


>gi|58582091|ref|YP_201107.1| ribonuclease T [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623997|ref|YP_451369.1| ribonuclease T [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576299|ref|YP_001913228.1| ribonuclease T [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426685|gb|AAW75722.1| ribonuclease T [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367937|dbj|BAE69095.1| ribonuclease T [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520751|gb|ACD58696.1| ribonuclease T [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 211

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 17/181 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCPN-GRKNSPEALKLH 63
            +V D+ET G DS    ++EI  V + +D         T    L P  G +  P++L++ 
Sbjct: 25  PVVVDVETGGFDSNKHALLEIACVPIEMDADGRFFPGDTASAHLVPAPGLEIDPKSLEIT 84

Query: 64  GITDEFL-----KDKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +       ++K +   +F+        +  Q A  + HNA FD+ F+NA + R+  
Sbjct: 85  GIVLDHPFRLAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 144

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ K
Sbjct: 145 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCK 202

Query: 174 M 174
           +
Sbjct: 203 I 203


>gi|325912570|ref|ZP_08174953.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
 gi|325477991|gb|EGC81120.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
          Length = 241

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 17/171 (9%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   K +DRII+ G   + D  K  +T+   + P   K  P A++ L GI+++
Sbjct: 13  VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+ 
Sbjct: 70  EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126

Query: 129 IARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+   P+       D+ S      + I H + H A  D+ + + + +K++
Sbjct: 127 LAQIAFPTIPSYKLQDITS-----TLHIKHANPHRADSDALVTAKMLLKII 172


>gi|227514420|ref|ZP_03944469.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC
           14931]
 gi|227087286|gb|EEI22598.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC
           14931]
          Length = 189

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGI +  +KD P+F  ++    +FF       IAHNA FD   +   L     +P   
Sbjct: 61  QVHGIHERDVKDAPTFPEVWEHIQEFFTPDKLV-IAHNATFDNSVLKNTLLHFEIEP-PV 118

Query: 121 SRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            + +DTL  +R+  P+  N  LN++C +  I + H   H AL D+H  +++ +
Sbjct: 119 YQTLDTLKTSRQLFPAFPNHKLNTICDQLNIDLHHH--HNALDDAHACANILL 169


>gi|121596441|ref|YP_988337.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42]
 gi|120608521|gb|ABM44261.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42]
          Length = 218

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 8/148 (5%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+  ++  R  E+ A+ L++  +    +Q  +   G +  P   +L GIT+  
Sbjct: 8   VIDFETTGMMPAQGARATEV-AIVLMEGGRVVDRYQSLMR-TGVRIPPFITQLTGITNAM 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P  +++  E   F    +A  +AHNA FD  F  AELQ        P     T+ +
Sbjct: 66  VEAAPDAAAVMREAARFVG--DAPMVAHNAAFDRKFWQAELQHAGLA--APHPFACTVLL 121

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRS 156
           +RR +P +  + L  L    G+  + R+
Sbjct: 122 SRRVYPDAPSHSLGRLTDHLGLPRAGRA 149


>gi|319938082|ref|ZP_08012482.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1]
 gi|319806988|gb|EFW03627.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1]
          Length = 221

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 18/158 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITD 67
           I++D+ETTGL +K D IIEIGA+    Y + N     F  LC  G   +   +++ GIT+
Sbjct: 41  IMYDLETTGLTNK-DHIIEIGAI----YVEDNTIVDSFSALCNPGIFITQRIVEITGITN 95

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNA-KFDVGFINAELQRINKD-PLDPSRII 124
           + L DKP    +  +F ++ N +     +  N   FD   +    +R   + P +  R +
Sbjct: 96  KMLSDKPPEYDVVKQFVEWCNSKETSLAVGQNINSFDNRMLKVATKRFKLNFPFE--RSL 153

Query: 125 DTLSIA-----RRKHPSSRNDLNSLCKRYGIT-ISHRS 156
           DTL +A     + K   + N  + L K YGI  ++HR+
Sbjct: 154 DTLKMAINMKLKEKGLVASNQQSDLGKLYGIEYVAHRA 191


>gi|320007769|gb|ADW02619.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           flavogriseus ATCC 33331]
          Length = 241

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 15/156 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68
           + FD+ETTG D + DRI+    V L      +      L P G     +A  +HGI+ E 
Sbjct: 9   LAFDLETTGTDVETDRIVTAAVVRLEADGSVSAELTWLLDP-GVAIPEQASAIHGISTER 67

Query: 69  ----FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD----- 119
                L    +   I     D         +  NA++D+  ++ E +R   D +      
Sbjct: 68  AREHGLPAAAAIEEITRAVADGLR-SGTPLVVMNARYDLSLLDRECRRYGVDSVSERLGD 126

Query: 120 -PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
            PS +ID L I +   K+   +  L++LC  YG+ +
Sbjct: 127 APSPVIDPLVIDKHVDKYRKGKRALHALCAHYGVRL 162


>gi|187251744|ref|YP_001876226.1| DNA polymerase III subunit epsilon [Elusimicrobium minutum Pei191]
 gi|186971904|gb|ACC98889.1| DNA polymerase III, epsilon subunit [Elusimicrobium minutum Pei191]
          Length = 201

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 14/173 (8%)

Query: 12  FDIETTGLDSKND-RIIEIGAV---ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            D ETTGL   +  R+ EI  +    L+  S+    +   + P     S E + +HGIT+
Sbjct: 16  LDTETTGLSPYDGARLCEIAVITNGALIAKSE----YGTIINPRCVI-SQEVINIHGITN 70

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E     P F  I         +  +  + HNA FD+ F+ AE  R     +  + I+DTL
Sbjct: 71  EMAAQAPYFEDIAPLLIGLLTD--SVIVCHNADFDIPFLAAEFARCGLR-MPQTVILDTL 127

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             AR+     +N+L  +    G  +S+   H A+ D+ +   V+   +    Q
Sbjct: 128 KFARKNGNFKKNNLGFIVSELG--LSNEGWHRAMADAKMTEKVFYHFLAAFKQ 178


>gi|56413202|ref|YP_150277.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362128|ref|YP_002141765.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127459|gb|AAV76965.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093605|emb|CAR59069.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 232

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RLITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           +RR  P  +    +L K   +++        H AL D ++ + + I +M
Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|323187079|gb|EFZ72395.1| ribonuclease T [Escherichia coli RN587/1]
          Length = 215

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112
           I D    D+ + S  +    + F              A  +AHNA FD  F+ A  +R  
Sbjct: 80  I-DPNDPDRGAISE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 137

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   + ++ 
Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195

Query: 173 KMM 175
           +++
Sbjct: 196 EIV 198


>gi|86142317|ref|ZP_01060827.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella
           blandensis MED217]
 gi|85831069|gb|EAQ49526.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella
           blandensis MED217]
          Length = 257

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG++   DRI+EI  +++L   K  +    +L        PE   +HGI DE + 
Sbjct: 12  FDLETTGINVAKDRIVEISVLKVLPNGKEEK--HTWLVNPTIPIPPETTAVHGIKDEDVA 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           DKP+F  + +E  +   + +      N +FD+  +  E+ R   D
Sbjct: 70  DKPTFKELANEIHNLIKDSDLAGFNSN-RFDIPLLAEEMLRAEVD 113


>gi|330001239|ref|ZP_08303928.1| exodeoxyribonuclease 10 [Klebsiella sp. MS 92-3]
 gi|328537753|gb|EGF63955.1| exodeoxyribonuclease 10 [Klebsiella sp. MS 92-3]
          Length = 219

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 29/168 (17%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++D   TN      L    R  SP+A+ +H IT+E +
Sbjct: 4   VIDTETCGLQGG---IVEIASVDIVDGQITNPMSH--LVRPDRPISPQAMAIHRITEEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    I   +        + W +AHNA FD        +R+   P      I T+ +
Sbjct: 59  ADKPWIEEIIPHY------HGSPWYVAHNASFD--------RRVL--PEMHGEGICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITIS-------HRSKHGALLDSHLLSDV 170
           ARR  P  +     L K   + ++       HR+ +   + + LL D+
Sbjct: 103 ARRLWPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYITAALLLDI 150


>gi|325963971|ref|YP_004241877.1| DNA polymerase III subunit epsilon [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470058|gb|ADX73743.1| DNA polymerase III, epsilon subunit [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 236

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 14/190 (7%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N + +  FD+ETTG +S+  RI+   +V ++D+         +L   G +   EA  +HG
Sbjct: 5   NTLPRAAFDLETTGRNSRAARIV-TASVTVVDHQAEVMREHEWLADPGVEIPTEASDVHG 63

Query: 65  ITDEFLK--DKPSFS---SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           IT E  +   +P+      + +   + F+  N   IA NA +D   + AE  R     L 
Sbjct: 64  ITTEQARREGRPAHEVTREVAAALQELFD-SNIPVIAFNASYDFTVLAAESARYGIPQLT 122

Query: 120 PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDV---YI 172
              ++D   + ++  ++   +  L +LC+ YG+ +  +H S   AL    +L  +   + 
Sbjct: 123 RFPVLDPYIMNKQVDRYRKGKRTLTALCEEYGVVLDNAHTSAADALATLRVLDAMAGKFP 182

Query: 173 KMMVGGSQIN 182
           K+ +  SQ++
Sbjct: 183 KLSMPASQLH 192


>gi|261340232|ref|ZP_05968090.1| exodeoxyribonuclease 10 [Enterobacter cancerogenus ATCC 35316]
 gi|288317749|gb|EFC56687.1| exodeoxyribonuclease 10 [Enterobacter cancerogenus ATCC 35316]
          Length = 220

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET  L      I+E+ +V+++D    N      L    R  SP+A+ +H IT+  +
Sbjct: 4   VIDTETCDLQGG---IVEVASVDVVDGQIVNPMSH--LVRPDRPISPQAMAIHRITESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    + S +        + W +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEEVISHY------HGSPWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   +++        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKSRKLSVQTPEGLHHHRALYDCYITAALLIDIM 151


>gi|184154853|ref|YP_001843193.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260663117|ref|ZP_05864009.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|183226197|dbj|BAG26713.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260552309|gb|EEX25360.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 179

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGI +  +KD P+F  ++    +FF       IAHNA FD   +   L     +P   
Sbjct: 51  QVHGIHERDVKDAPTFPEVWEHIQEFFTPDKLV-IAHNATFDNSVLKNTLLHFEIEP-PV 108

Query: 121 SRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            + +DTL  +R+  P+  N  LN++C +  I + H   H AL D+H  +++ +
Sbjct: 109 YQTLDTLKTSRQLFPAFPNHKLNTICDQLNIDLHHH--HNALDDAHACANILL 159


>gi|269966452|ref|ZP_06180536.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
 gi|269828909|gb|EEZ83159.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
          Length = 248

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 19/190 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+S+ D I+ IG V   +D  + N +    + PN R+ + E++ +HGITD 
Sbjct: 59  VSVDFETTGLNSEEDVILTIGLVPFTIDRVQCNGSAHWVVNPN-RELNHESVIIHGITDS 117

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127
            +K+ P  S I  E  D  + +    + H    +  F  NA L  I +    P  ++DTL
Sbjct: 118 EVKNAPQLSQILGEILDALSGKVV--LVHYKNIERQFFNNALLNSIGEGIQFP--VVDTL 173

Query: 128 ----SIARRKHPSSRNDLNSL-CKRYG-ITISH-RSKHG--ALLDSHLLSDVYIKMMVGG 178
               +I RR+    R  +N L  K+ G + + + R ++G  A    H L+D      +  
Sbjct: 174 DIEYAIQRRE---CRGFINKLKGKKPGSVRLGYARERYGLPAYQPHHALTDALATAELFQ 230

Query: 179 SQINFGFKTN 188
           +Q+ + F  N
Sbjct: 231 AQLQYHFNRN 240


>gi|27367317|ref|NP_762844.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
 gi|27358886|gb|AAO07834.1| DNA polymerase III epsilon subunit [Vibrio vulnificus CMCP6]
          Length = 245

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 4/127 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGLD+K+D+I+ IG V+L        + +  L  +G     E+ +++G+T + 
Sbjct: 54  LALDFETTGLDAKHDKILSIGMVDLTLEGINLSSAEEILLNHGAYIKAESARINGLTPQA 113

Query: 70  LKDKPSF---SSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           L+   S     S+       F   Q    +AH+A  + GF+ A  Q+  +    P   +D
Sbjct: 114 LEQGCSLEQGCSLEQGMMRLFERAQGKVLLAHSAIIEQGFLQAFAQQHFQLAKLPCHFVD 173

Query: 126 TLSIARR 132
           TL I +R
Sbjct: 174 TLQIEKR 180


>gi|65318908|ref|ZP_00391867.1| COG1199: Rad3-related DNA helicases [Bacillus anthracis str. A2012]
          Length = 934

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  E ++     +   + +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEEXRQAGYTEIHCPK-VD 118

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|323462903|pdb|3NGY|A Chain A, Crystal Structure Of Rnase T (E92g Mutant)
 gi|323462904|pdb|3NGY|B Chain B, Crystal Structure Of Rnase T (E92g Mutant)
 gi|323462905|pdb|3NGY|C Chain C, Crystal Structure Of Rnase T (E92g Mutant)
 gi|323462906|pdb|3NGY|D Chain D, Crystal Structure Of Rnase T (E92g Mutant)
 gi|323462908|pdb|3NGZ|A Chain A, Crystal Structure Of Rnase T In Complex With A
           Non-Preferred Ssdna (Gc) With One Mg In The Active Site
 gi|323462909|pdb|3NGZ|B Chain B, Crystal Structure Of Rnase T In Complex With A
           Non-Preferred Ssdna (Gc) With One Mg In The Active Site
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 40  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 99

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112
           I D    D+ + S  +    + F              A  +AHNA FD  F+ A  +R  
Sbjct: 100 I-DPNDPDRGAVSG-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 157

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   + ++ 
Sbjct: 158 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 215

Query: 173 KMM 175
           +++
Sbjct: 216 EIV 218


>gi|320159156|ref|YP_004191534.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
 gi|319934468|gb|ADV89331.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
          Length = 238

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGLD+K+D+I+ IG V+L        + +  L  +G     E+ +++G+T + 
Sbjct: 53  LALDFETTGLDAKHDKILSIGMVDLTLEGINLSSAEEILLNHGAYIKAESARINGLTPQA 112

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   S          F   Q    +AH+A  + GF+    Q+  +    P   +DTL I
Sbjct: 113 LEQGCSLEQGMMRL--FERAQGKVLLAHSAIIEQGFLQTFAQQHFQLAKLPCHFVDTLQI 170

Query: 130 ARR 132
            +R
Sbjct: 171 EKR 173


>gi|56460902|ref|YP_156183.1| ribonuclease T [Idiomarina loihiensis L2TR]
 gi|56179912|gb|AAV82634.1| RNase T, degrades tRNA [Idiomarina loihiensis L2TR]
          Length = 215

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCPNGRKNSPEA----- 59
           +V D+ET G ++K D ++EI AV LLD+      K   +    + P    N  +A     
Sbjct: 19  VVVDVETAGFNAKTDALLEIAAV-LLDFDDDGILKPVDSVHYHVKPFEGANIEQAAIDFN 77

Query: 60  -----LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
                  L G  +E    +  F  I  +       Q +  + HN+ FD GF+ A  +R N
Sbjct: 78  GIDPHCPLRGAVEEGEALRELFKPI-RKAQKAAGCQRSVLVGHNSNFDHGFMMAAAERAN 136

Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             ++P  P    DT S+A       +  L   C+  GI    +  H AL D+   +++Y 
Sbjct: 137 LKRNPFHPFVSFDTTSLAAMT--LGQTVLIKACQAAGIEFDSKQAHSALYDTERTAELYC 194

Query: 173 KMM 175
            M+
Sbjct: 195 WMI 197


>gi|332343370|gb|AEE56704.1| ribonuclease T [Escherichia coli UMNK88]
          Length = 215

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112
           I D    D+ + S  +    + F              A  +AHNA FD  F+ A  +R  
Sbjct: 80  I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 137

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   + ++ 
Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195

Query: 173 KMM 175
           +++
Sbjct: 196 EIV 198


>gi|302518301|ref|ZP_07270643.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
 gi|302427196|gb|EFK99011.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
          Length = 329

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 12/163 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRI+      +    +    +   + P   +  P  + +HG+T E L
Sbjct: 23  VVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTLVNP---ERDPGPVWIHGLTSEVL 78

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSI 129
           +  P F  I  E     + +    +AHNA FD   +  E  R     P+   R + T+++
Sbjct: 79  EGAPLFPEIAEELSRRLDGRVL--VAHNAVFDWSMLAREYARAGITAPV--RRRLCTIAL 134

Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           A+    P   + L +L   +G  +  R  H AL D+ +L++ +
Sbjct: 135 AKELALPLPNHKLETLAAHFG--VEQRRAHHALDDARVLAEAF 175


>gi|300904499|ref|ZP_07122340.1| ribonuclease T [Escherichia coli MS 84-1]
 gi|300918020|ref|ZP_07134642.1| ribonuclease T [Escherichia coli MS 115-1]
 gi|301303165|ref|ZP_07209291.1| ribonuclease T [Escherichia coli MS 124-1]
 gi|300403565|gb|EFJ87103.1| ribonuclease T [Escherichia coli MS 84-1]
 gi|300414762|gb|EFJ98072.1| ribonuclease T [Escherichia coli MS 115-1]
 gi|300841574|gb|EFK69334.1| ribonuclease T [Escherichia coli MS 124-1]
 gi|315257547|gb|EFU37515.1| ribonuclease T [Escherichia coli MS 85-1]
          Length = 215

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112
           I D    D+ + S  +    + F              A  +AHNA FD  F+ A  +R  
Sbjct: 80  I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 137

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   + ++ 
Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195

Query: 173 KMM 175
           +++
Sbjct: 196 EIV 198


>gi|221316927|ref|YP_002533071.1| bacteriophage 186 Orf81-like protein [Bacillus cereus Q1]
 gi|221243259|gb|ACM15967.1| bacteriophage 186 Orf81-like protein [Bacillus cereus Q1]
          Length = 288

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 8/116 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I KNK   I+ D ETTGL   ++ I+EI A++L      N     F+ P     + ++ K
Sbjct: 120 IEKNKDNYIILDTETTGLGLGHE-IVEIAAIDLYG----NTLLNTFVTPTIPIPA-DSTK 173

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGITD+ +KD PS+   + +       Q    + +NA FD+  I+   +  N  P
Sbjct: 174 IHGITDDMVKDAPSWEETYMKLLTI--SQGKTILIYNAAFDIPKISYTCEVHNIAP 227


>gi|323345727|ref|ZP_08085950.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella oralis
           ATCC 33269]
 gi|323093841|gb|EFZ36419.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella oralis
           ATCC 33269]
          Length = 284

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGLD  ND II+I  +++    K  R   +F+ P G     E   L GI ++ 
Sbjct: 10  IVFDLETTGLDLVNDHIIQISYIKVYPDGKEERE-NIFVNP-GISIPEEVTLLTGIGNDD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD-PLDPSRIIDTL 127
           +KD P+F  I S   + F  +  ++  +N+  FD+  +  E  R   D      R+ID  
Sbjct: 68  VKDAPTFKEIASSLCEKF--KGCDFAGYNSNHFDIPMLAEEFLRAGIDFDFAHCRLIDAQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
           +I    H   + +L +  K Y
Sbjct: 126 TIF---HKMEKRNLAAAYKFY 143


>gi|126651265|ref|ZP_01723475.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. B14905]
 gi|126592103|gb|EAZ86169.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. B14905]
          Length = 914

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 15/171 (8%)

Query: 12  FDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69
            D+ETTG    N DR+I+I  V + D+ +  RT+  F+ P   K  P  ++ L  IT+E 
Sbjct: 1   MDLETTGHSPANGDRMIQIAIVIMKDW-EIERTYTKFINPG--KAIPSFIQDLTHITNED 57

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +KD    S  F E  D+  E  A+  ++AHNA FD+ F+ AE +R    P    + +DT+
Sbjct: 58  VKD----SYPFEEHADYIYELLADCVFVAHNADFDLSFLQAEFKRAGL-PKWQGKKMDTV 112

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKMM 175
            +A+   P S    L  L     I +  +HR+   A   + L    + +++
Sbjct: 113 ELAKILFPMSLGFKLGDLAADLNIELANAHRADDDARATAELFKCCWKELL 163


>gi|139439869|ref|ZP_01773234.1| Hypothetical protein COLAER_02268 [Collinsella aerofaciens ATCC
           25986]
 gi|133774797|gb|EBA38617.1| Hypothetical protein COLAER_02268 [Collinsella aerofaciens ATCC
           25986]
          Length = 964

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 10/149 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D ETTGL  +++ +IEI A  L      +R F  F+ P  +    E  +L  IT+  
Sbjct: 39  IVLDTETTGLSVQDNELIEISAARLSGREVVDR-FDTFVHPK-QLIPAEITELTSITNAD 96

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D PS     +   DF        IAHNA FD  FI +    +N   +     ID+L++
Sbjct: 97  VADAPSAVEAVAALADFVG--GCPVIAHNATFDRSFIESVKGGVNVSDI----WIDSLAL 150

Query: 130 ARRKHPS-SRNDLNSLCKRYGI-TISHRS 156
           +R   P  + + L+ +   +G  ++SHR+
Sbjct: 151 SRIALPRLASHKLSFMADLFGCDSVSHRA 179


>gi|291527626|emb|CBK93212.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium rectale M104/1]
          Length = 260

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 21/173 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHG 64
           V D+E TGL +KND+IIEIGA      E++D      T    + P  +++ P+ ++ L G
Sbjct: 27  VIDLEMTGLSAKNDKIIEIGAARVRGGEIVD------TISTLVNP--KQHIPQRVQELTG 78

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD  +++            DF  +     +  N  FD  F+      +N          
Sbjct: 79  ITDSDVENAADMDVAVDNLLDFIGDDII--LGQNVTFDYSFLKQ--WAVNHKRTLSLNAY 134

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           DTL IAR+  P+ ++  L  LC+ +   +S  + H AL D+     ++ K++ 
Sbjct: 135 DTLKIARKCLPAEQSKKLEDLCEYFD--VSRENAHRALDDAIETKQIFEKLLA 185


>gi|108563906|ref|YP_628222.1| DNA polymerase III subunit epsilon [Helicobacter pylori HPAG1]
 gi|107837679|gb|ABF85548.1| DNA polymerase III epsilon subunit [Helicobacter pylori HPAG1]
          Length = 323

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 17/214 (7%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GIT E   
Sbjct: 113 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 168

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 169 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 225

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQINFGFKT 187
           R   S R  L+ L     +GI +SHR+   AL    L     + +   +  +     F  
Sbjct: 226 RAILSMRYSLSFLKELLGFGIEVSHRAYADALASYKLFEICLLNLPSYIKTTMDLIDFSK 285

Query: 188 NEDRFFK-----EEKKTVPNISLLKRDKPLFTRI 216
             +   K       ++T P  SL +R K LF  I
Sbjct: 286 CANTLIKRPPRARHQETPPPFSLFERTKGLFNII 319


>gi|15802066|ref|NP_288088.1| ribonuclease T [Escherichia coli O157:H7 EDL933]
 gi|15831615|ref|NP_310388.1| ribonuclease T [Escherichia coli O157:H7 str. Sakai]
 gi|24113043|ref|NP_707553.1| ribonuclease T [Shigella flexneri 2a str. 301]
 gi|26247900|ref|NP_753940.1| ribonuclease T [Escherichia coli CFT073]
 gi|30063168|ref|NP_837339.1| ribonuclease T [Shigella flexneri 2a str. 2457T]
 gi|74312020|ref|YP_310439.1| ribonuclease T [Shigella sonnei Ss046]
 gi|82777129|ref|YP_403478.1| ribonuclease T [Shigella dysenteriae Sd197]
 gi|91210866|ref|YP_540852.1| ribonuclease T [Escherichia coli UTI89]
 gi|110641774|ref|YP_669504.1| ribonuclease T [Escherichia coli 536]
 gi|117623836|ref|YP_852749.1| ribonuclease T [Escherichia coli APEC O1]
 gi|157159164|ref|YP_001462944.1| ribonuclease T [Escherichia coli E24377A]
 gi|157161115|ref|YP_001458433.1| ribonuclease T [Escherichia coli HS]
 gi|168752335|ref|ZP_02777357.1| ribonuclease T [Escherichia coli O157:H7 str. EC4113]
 gi|168759015|ref|ZP_02784022.1| ribonuclease T [Escherichia coli O157:H7 str. EC4401]
 gi|168765301|ref|ZP_02790308.1| ribonuclease T [Escherichia coli O157:H7 str. EC4501]
 gi|168771196|ref|ZP_02796203.1| ribonuclease T [Escherichia coli O157:H7 str. EC4486]
 gi|168775884|ref|ZP_02800891.1| ribonuclease T [Escherichia coli O157:H7 str. EC4196]
 gi|168783923|ref|ZP_02808930.1| ribonuclease T [Escherichia coli O157:H7 str. EC4076]
 gi|168789491|ref|ZP_02814498.1| ribonuclease T [Escherichia coli O157:H7 str. EC869]
 gi|168802776|ref|ZP_02827783.1| ribonuclease T [Escherichia coli O157:H7 str. EC508]
 gi|170019996|ref|YP_001724950.1| ribonuclease T [Escherichia coli ATCC 8739]
 gi|170681755|ref|YP_001743601.1| ribonuclease T [Escherichia coli SMS-3-5]
 gi|187731741|ref|YP_001880408.1| ribonuclease T [Shigella boydii CDC 3083-94]
 gi|188496363|ref|ZP_03003633.1| ribonuclease T [Escherichia coli 53638]
 gi|191165895|ref|ZP_03027732.1| ribonuclease T [Escherichia coli B7A]
 gi|191173445|ref|ZP_03034973.1| ribonuclease T [Escherichia coli F11]
 gi|193064949|ref|ZP_03046025.1| ribonuclease T [Escherichia coli E22]
 gi|193070264|ref|ZP_03051208.1| ribonuclease T [Escherichia coli E110019]
 gi|194426088|ref|ZP_03058644.1| ribonuclease T [Escherichia coli B171]
 gi|194436646|ref|ZP_03068747.1| ribonuclease T [Escherichia coli 101-1]
 gi|195940215|ref|ZP_03085597.1| ribonuclease T [Escherichia coli O157:H7 str. EC4024]
 gi|208810464|ref|ZP_03252340.1| ribonuclease T [Escherichia coli O157:H7 str. EC4206]
 gi|208816877|ref|ZP_03257997.1| ribonuclease T [Escherichia coli O157:H7 str. EC4045]
 gi|208820253|ref|ZP_03260573.1| ribonuclease T [Escherichia coli O157:H7 str. EC4042]
 gi|209396384|ref|YP_002270721.1| ribonuclease T [Escherichia coli O157:H7 str. EC4115]
 gi|209918966|ref|YP_002293050.1| ribonuclease T [Escherichia coli SE11]
 gi|217328725|ref|ZP_03444806.1| ribonuclease T [Escherichia coli O157:H7 str. TW14588]
 gi|218554220|ref|YP_002387133.1| ribonuclease T [Escherichia coli IAI1]
 gi|218558523|ref|YP_002391436.1| ribonuclease T [Escherichia coli S88]
 gi|218689598|ref|YP_002397810.1| ribonuclease T [Escherichia coli ED1a]
 gi|218695215|ref|YP_002402882.1| ribonuclease T [Escherichia coli 55989]
 gi|218699780|ref|YP_002407409.1| ribonuclease T [Escherichia coli IAI39]
 gi|218705152|ref|YP_002412671.1| ribonuclease T [Escherichia coli UMN026]
 gi|227885930|ref|ZP_04003735.1| exoribonuclease T [Escherichia coli 83972]
 gi|237705597|ref|ZP_04536078.1| ribonuclease T [Escherichia sp. 3_2_53FAA]
 gi|253773389|ref|YP_003036220.1| ribonuclease T [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161714|ref|YP_003044822.1| ribonuclease T [Escherichia coli B str. REL606]
 gi|254793269|ref|YP_003078106.1| ribonuclease T [Escherichia coli O157:H7 str. TW14359]
 gi|256018153|ref|ZP_05432018.1| ribonuclease T [Shigella sp. D9]
 gi|260843958|ref|YP_003221736.1| ribonuclease T [Escherichia coli O103:H2 str. 12009]
 gi|260855477|ref|YP_003229368.1| ribonuclease T [Escherichia coli O26:H11 str. 11368]
 gi|260868144|ref|YP_003234546.1| ribonuclease T [Escherichia coli O111:H- str. 11128]
 gi|261227902|ref|ZP_05942183.1| ribonuclease T (RNase T) [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258364|ref|ZP_05950897.1| ribonuclease T [Escherichia coli O157:H7 str. FRIK966]
 gi|291282784|ref|YP_003499602.1| Ribonuclease T [Escherichia coli O55:H7 str. CB9615]
 gi|293405152|ref|ZP_06649144.1| ribonuclease T [Escherichia coli FVEC1412]
 gi|293409965|ref|ZP_06653541.1| ribonuclease T [Escherichia coli B354]
 gi|293414968|ref|ZP_06657611.1| ribonuclease T [Escherichia coli B185]
 gi|293446028|ref|ZP_06662450.1| ribonuclease T [Escherichia coli B088]
 gi|297520520|ref|ZP_06938906.1| ribonuclease T [Escherichia coli OP50]
 gi|298380798|ref|ZP_06990397.1| ribonuclease T [Escherichia coli FVEC1302]
 gi|300819590|ref|ZP_07099783.1| ribonuclease T [Escherichia coli MS 107-1]
 gi|300821475|ref|ZP_07101622.1| ribonuclease T [Escherichia coli MS 119-7]
 gi|300901538|ref|ZP_07119609.1| ribonuclease T [Escherichia coli MS 198-1]
 gi|300924684|ref|ZP_07140632.1| ribonuclease T [Escherichia coli MS 182-1]
 gi|300930881|ref|ZP_07146250.1| ribonuclease T [Escherichia coli MS 187-1]
 gi|300939029|ref|ZP_07153724.1| ribonuclease T [Escherichia coli MS 21-1]
 gi|300987874|ref|ZP_07178425.1| ribonuclease T [Escherichia coli MS 200-1]
 gi|300995389|ref|ZP_07181069.1| ribonuclease T [Escherichia coli MS 45-1]
 gi|301026836|ref|ZP_07190236.1| ribonuclease T [Escherichia coli MS 69-1]
 gi|301051019|ref|ZP_07197863.1| ribonuclease T [Escherichia coli MS 185-1]
 gi|301326587|ref|ZP_07219926.1| ribonuclease T [Escherichia coli MS 78-1]
 gi|306813383|ref|ZP_07447573.1| ribonuclease T [Escherichia coli NC101]
 gi|307310775|ref|ZP_07590421.1| ribonuclease T [Escherichia coli W]
 gi|309788378|ref|ZP_07682982.1| ribonuclease T [Shigella dysenteriae 1617]
 gi|309793418|ref|ZP_07687845.1| ribonuclease T [Escherichia coli MS 145-7]
 gi|312969674|ref|ZP_07783857.1| ribonuclease T [Escherichia coli 1827-70]
 gi|331653048|ref|ZP_08354053.1| ribonuclease T [Escherichia coli M718]
 gi|331663127|ref|ZP_08364037.1| ribonuclease T [Escherichia coli TA143]
 gi|331668331|ref|ZP_08369179.1| ribonuclease T [Escherichia coli TA271]
 gi|332279200|ref|ZP_08391613.1| ribonuclease T [Shigella sp. D9]
 gi|54039257|sp|P66682|RNT_ECO57 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|54039258|sp|P66683|RNT_SHIFL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|54042001|sp|P66681|RNT_ECOL6 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|122423656|sp|Q1RBE3|RNT_ECOUT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|123148046|sp|Q0THH6|RNT_ECOL5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|123562458|sp|Q32FB8|RNT_SHIDS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|123617229|sp|Q3Z208|RNT_SHISS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|166228563|sp|A1ABJ5|RNT_ECOK1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|166991088|sp|A7ZMB5|RNT_ECO24 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|166991089|sp|A8A0J6|RNT_ECOHS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|12515647|gb|AAG56641.1|AE005388_6 RNase T, degrades tRNA [Escherichia coli O157:H7 str. EDL933]
 gi|26108303|gb|AAN80505.1|AE016761_80 Ribonuclease T [Escherichia coli CFT073]
 gi|13361828|dbj|BAB35784.1| RNase T [Escherichia coli O157:H7 str. Sakai]
 gi|24052011|gb|AAN43260.1| RNase T [Shigella flexneri 2a str. 301]
 gi|30041420|gb|AAP17148.1| RNase T [Shigella flexneri 2a str. 2457T]
 gi|73855497|gb|AAZ88204.1| RNase T [Shigella sonnei Ss046]
 gi|81241277|gb|ABB61987.1| RNase T [Shigella dysenteriae Sd197]
 gi|91072440|gb|ABE07321.1| RNase T, degrades tRNA [Escherichia coli UTI89]
 gi|110343366|gb|ABG69603.1| ribonuclease T [Escherichia coli 536]
 gi|115512960|gb|ABJ01035.1| RNase T [Escherichia coli APEC O1]
 gi|157066795|gb|ABV06050.1| ribonuclease T [Escherichia coli HS]
 gi|157081194|gb|ABV20902.1| ribonuclease T [Escherichia coli E24377A]
 gi|169754924|gb|ACA77623.1| ribonuclease T [Escherichia coli ATCC 8739]
 gi|170519473|gb|ACB17651.1| ribonuclease T [Escherichia coli SMS-3-5]
 gi|187428733|gb|ACD08007.1| ribonuclease T [Shigella boydii CDC 3083-94]
 gi|187768648|gb|EDU32492.1| ribonuclease T [Escherichia coli O157:H7 str. EC4196]
 gi|188013802|gb|EDU51924.1| ribonuclease T [Escherichia coli O157:H7 str. EC4113]
 gi|188491562|gb|EDU66665.1| ribonuclease T [Escherichia coli 53638]
 gi|188998818|gb|EDU67804.1| ribonuclease T [Escherichia coli O157:H7 str. EC4076]
 gi|189354299|gb|EDU72718.1| ribonuclease T [Escherichia coli O157:H7 str. EC4401]
 gi|189360025|gb|EDU78444.1| ribonuclease T [Escherichia coli O157:H7 str. EC4486]
 gi|189364907|gb|EDU83323.1| ribonuclease T [Escherichia coli O157:H7 str. EC4501]
 gi|189370964|gb|EDU89380.1| ribonuclease T [Escherichia coli O157:H7 str. EC869]
 gi|189375329|gb|EDU93745.1| ribonuclease T [Escherichia coli O157:H7 str. EC508]
 gi|190904026|gb|EDV63738.1| ribonuclease T [Escherichia coli B7A]
 gi|190906287|gb|EDV65898.1| ribonuclease T [Escherichia coli F11]
 gi|192927436|gb|EDV82054.1| ribonuclease T [Escherichia coli E22]
 gi|192956445|gb|EDV86904.1| ribonuclease T [Escherichia coli E110019]
 gi|194416143|gb|EDX32409.1| ribonuclease T [Escherichia coli B171]
 gi|194424678|gb|EDX40664.1| ribonuclease T [Escherichia coli 101-1]
 gi|208724980|gb|EDZ74687.1| ribonuclease T [Escherichia coli O157:H7 str. EC4206]
 gi|208731220|gb|EDZ79909.1| ribonuclease T [Escherichia coli O157:H7 str. EC4045]
 gi|208740376|gb|EDZ88058.1| ribonuclease T [Escherichia coli O157:H7 str. EC4042]
 gi|209157784|gb|ACI35217.1| ribonuclease T [Escherichia coli O157:H7 str. EC4115]
 gi|209769438|gb|ACI83031.1| RNase T [Escherichia coli]
 gi|209769440|gb|ACI83032.1| RNase T [Escherichia coli]
 gi|209769442|gb|ACI83033.1| RNase T [Escherichia coli]
 gi|209769444|gb|ACI83034.1| RNase T [Escherichia coli]
 gi|209769446|gb|ACI83035.1| RNase T [Escherichia coli]
 gi|209912225|dbj|BAG77299.1| ribonuclease T [Escherichia coli SE11]
 gi|217318072|gb|EEC26499.1| ribonuclease T [Escherichia coli O157:H7 str. TW14588]
 gi|218351947|emb|CAU97679.1| ribonuclease T (RNase T) [Escherichia coli 55989]
 gi|218360988|emb|CAQ98561.1| ribonuclease T (RNase T) [Escherichia coli IAI1]
 gi|218365292|emb|CAR03013.1| ribonuclease T (RNase T) [Escherichia coli S88]
 gi|218369766|emb|CAR17537.1| ribonuclease T (RNase T) [Escherichia coli IAI39]
 gi|218427162|emb|CAR08045.2| ribonuclease T (RNase T) [Escherichia coli ED1a]
 gi|218432249|emb|CAR13139.1| ribonuclease T (RNase T) [Escherichia coli UMN026]
 gi|222033411|emb|CAP76152.1| ribonuclease T [Escherichia coli LF82]
 gi|226900354|gb|EEH86613.1| ribonuclease T [Escherichia sp. 3_2_53FAA]
 gi|227837109|gb|EEJ47575.1| exoribonuclease T [Escherichia coli 83972]
 gi|242377382|emb|CAQ32129.1| RNase T [Escherichia coli BL21(DE3)]
 gi|253324433|gb|ACT29035.1| ribonuclease T [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973615|gb|ACT39286.1| ribonuclease T [Escherichia coli B str. REL606]
 gi|253977810|gb|ACT43480.1| ribonuclease T [Escherichia coli BL21(DE3)]
 gi|254592669|gb|ACT72030.1| ribonuclease T (RNase T) [Escherichia coli O157:H7 str. TW14359]
 gi|257754126|dbj|BAI25628.1| ribonuclease T [Escherichia coli O26:H11 str. 11368]
 gi|257759105|dbj|BAI30602.1| ribonuclease T [Escherichia coli O103:H2 str. 12009]
 gi|257764500|dbj|BAI35995.1| ribonuclease T [Escherichia coli O111:H- str. 11128]
 gi|281601087|gb|ADA74071.1| Ribonuclease T [Shigella flexneri 2002017]
 gi|284921576|emb|CBG34648.1| ribonuclease T [Escherichia coli 042]
 gi|290762657|gb|ADD56618.1| Ribonuclease T [Escherichia coli O55:H7 str. CB9615]
 gi|291322858|gb|EFE62286.1| ribonuclease T [Escherichia coli B088]
 gi|291427360|gb|EFF00387.1| ribonuclease T [Escherichia coli FVEC1412]
 gi|291432616|gb|EFF05595.1| ribonuclease T [Escherichia coli B185]
 gi|291470433|gb|EFF12917.1| ribonuclease T [Escherichia coli B354]
 gi|294491548|gb|ADE90304.1| ribonuclease T [Escherichia coli IHE3034]
 gi|298278240|gb|EFI19754.1| ribonuclease T [Escherichia coli FVEC1302]
 gi|300297314|gb|EFJ53699.1| ribonuclease T [Escherichia coli MS 185-1]
 gi|300306022|gb|EFJ60542.1| ribonuclease T [Escherichia coli MS 200-1]
 gi|300355068|gb|EFJ70938.1| ribonuclease T [Escherichia coli MS 198-1]
 gi|300395276|gb|EFJ78814.1| ribonuclease T [Escherichia coli MS 69-1]
 gi|300406150|gb|EFJ89688.1| ribonuclease T [Escherichia coli MS 45-1]
 gi|300419111|gb|EFK02422.1| ribonuclease T [Escherichia coli MS 182-1]
 gi|300456057|gb|EFK19550.1| ribonuclease T [Escherichia coli MS 21-1]
 gi|300461297|gb|EFK24790.1| ribonuclease T [Escherichia coli MS 187-1]
 gi|300525978|gb|EFK47047.1| ribonuclease T [Escherichia coli MS 119-7]
 gi|300527838|gb|EFK48900.1| ribonuclease T [Escherichia coli MS 107-1]
 gi|300846749|gb|EFK74509.1| ribonuclease T [Escherichia coli MS 78-1]
 gi|305853128|gb|EFM53568.1| ribonuclease T [Escherichia coli NC101]
 gi|306908953|gb|EFN39449.1| ribonuclease T [Escherichia coli W]
 gi|307553675|gb|ADN46450.1| ribonuclease T [Escherichia coli ABU 83972]
 gi|307626861|gb|ADN71165.1| ribonuclease T [Escherichia coli UM146]
 gi|308123005|gb|EFO60267.1| ribonuclease T [Escherichia coli MS 145-7]
 gi|308923760|gb|EFP69263.1| ribonuclease T [Shigella dysenteriae 1617]
 gi|310337959|gb|EFQ03048.1| ribonuclease T [Escherichia coli 1827-70]
 gi|312946253|gb|ADR27080.1| ribonuclease T [Escherichia coli O83:H1 str. NRG 857C]
 gi|313648931|gb|EFS13368.1| ribonuclease T [Shigella flexneri 2a str. 2457T]
 gi|315060959|gb|ADT75286.1| ribonuclease T (RNase T) [Escherichia coli W]
 gi|315286357|gb|EFU45793.1| ribonuclease T [Escherichia coli MS 110-3]
 gi|320174139|gb|EFW49304.1| Ribonuclease T [Shigella dysenteriae CDC 74-1112]
 gi|320181325|gb|EFW56244.1| Ribonuclease T [Shigella boydii ATCC 9905]
 gi|320188340|gb|EFW63002.1| Ribonuclease T [Escherichia coli O157:H7 str. EC1212]
 gi|320195450|gb|EFW70075.1| Ribonuclease T [Escherichia coli WV_060327]
 gi|320197835|gb|EFW72443.1| Ribonuclease T [Escherichia coli EC4100B]
 gi|320642007|gb|EFX11371.1| ribonuclease T [Escherichia coli O157:H7 str. G5101]
 gi|320647324|gb|EFX16132.1| ribonuclease T [Escherichia coli O157:H- str. 493-89]
 gi|320652618|gb|EFX20887.1| ribonuclease T [Escherichia coli O157:H- str. H 2687]
 gi|320653004|gb|EFX21200.1| ribonuclease T [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320658687|gb|EFX26364.1| ribonuclease T [Escherichia coli O55:H7 str. USDA 5905]
 gi|323152841|gb|EFZ39111.1| ribonuclease T [Escherichia coli EPECa14]
 gi|323169213|gb|EFZ54889.1| ribonuclease T [Shigella sonnei 53G]
 gi|323169961|gb|EFZ55617.1| ribonuclease T [Escherichia coli LT-68]
 gi|323180968|gb|EFZ66506.1| ribonuclease T [Escherichia coli 1180]
 gi|323186075|gb|EFZ71431.1| ribonuclease T [Escherichia coli 1357]
 gi|323378470|gb|ADX50738.1| ribonuclease T [Escherichia coli KO11]
 gi|323948052|gb|EGB44044.1| ribonuclease T [Escherichia coli H120]
 gi|323952162|gb|EGB48035.1| ribonuclease T [Escherichia coli H252]
 gi|323956663|gb|EGB52400.1| ribonuclease T [Escherichia coli H263]
 gi|323962144|gb|EGB57739.1| ribonuclease T [Escherichia coli H489]
 gi|323968420|gb|EGB63826.1| ribonuclease T [Escherichia coli M863]
 gi|323973968|gb|EGB69140.1| ribonuclease T [Escherichia coli TA007]
 gi|323978209|gb|EGB73295.1| ribonuclease T [Escherichia coli TW10509]
 gi|324007017|gb|EGB76236.1| ribonuclease T [Escherichia coli MS 57-2]
 gi|324011423|gb|EGB80642.1| ribonuclease T [Escherichia coli MS 60-1]
 gi|324016541|gb|EGB85760.1| ribonuclease T [Escherichia coli MS 117-3]
 gi|324119138|gb|EGC13026.1| ribonuclease T [Escherichia coli E1167]
 gi|326342019|gb|EGD65800.1| Ribonuclease T [Escherichia coli O157:H7 str. 1044]
 gi|326343571|gb|EGD67333.1| Ribonuclease T [Escherichia coli O157:H7 str. 1125]
 gi|327252769|gb|EGE64423.1| ribonuclease T [Escherichia coli STEC_7v]
 gi|331049146|gb|EGI21218.1| ribonuclease T [Escherichia coli M718]
 gi|331058926|gb|EGI30903.1| ribonuclease T [Escherichia coli TA143]
 gi|331063525|gb|EGI35436.1| ribonuclease T [Escherichia coli TA271]
 gi|332101552|gb|EGJ04898.1| ribonuclease T [Shigella sp. D9]
 gi|332756966|gb|EGJ87309.1| ribonuclease T [Shigella flexneri 4343-70]
 gi|332758172|gb|EGJ88497.1| ribonuclease T [Shigella flexneri 2747-71]
 gi|332758486|gb|EGJ88807.1| ribonuclease T [Shigella flexneri K-671]
 gi|332767056|gb|EGJ97255.1| ribonuclease T [Shigella flexneri 2930-71]
 gi|333004001|gb|EGK23536.1| ribonuclease T [Shigella flexneri K-218]
 gi|333005308|gb|EGK24828.1| ribonuclease T [Shigella flexneri VA-6]
 gi|333005888|gb|EGK25404.1| ribonuclease T [Shigella flexneri K-272]
 gi|333017888|gb|EGK37193.1| ribonuclease T [Shigella flexneri K-304]
 gi|333018868|gb|EGK38161.1| ribonuclease T [Shigella flexneri K-227]
          Length = 215

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112
           I D    D+ + S  +    + F              A  +AHNA FD  F+ A  +R  
Sbjct: 80  I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 137

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   + ++ 
Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195

Query: 173 KMM 175
           +++
Sbjct: 196 EIV 198


>gi|332090790|gb|EGI95882.1| ribonuclease T [Shigella boydii 5216-82]
          Length = 215

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112
           I D    D+ + S  +    + F              A  +AHNA FD  F+ A  +R  
Sbjct: 80  I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 137

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   + ++ 
Sbjct: 138 LKRNPFHPFATFDTTALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195

Query: 173 KMM 175
           +++
Sbjct: 196 EIV 198


>gi|318057718|ref|ZP_07976441.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318079748|ref|ZP_07987080.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
 gi|333028027|ref|ZP_08456091.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
 gi|332747879|gb|EGJ78320.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
          Length = 331

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 12/163 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRI+      +    +    +   + P   +  P  + +HG+T E L
Sbjct: 21  VVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTLVNP---ERDPGPVWIHGLTSEVL 76

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSI 129
           +  P F  I  E     + +    +AHNA FD   +  E  R     P+   R + T+++
Sbjct: 77  EGAPLFPEIAEELSRRLDGRVL--VAHNAVFDWSMLAREYARAGITAPV--RRRLCTIAL 132

Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           A+    P   + L +L   +G  +  R  H AL D+ +L++ +
Sbjct: 133 AKELALPLPNHKLETLAAHFG--VEQRRAHHALDDARVLAEAF 173


>gi|237752604|ref|ZP_04583084.1| DNA polymerase III subunit epsilon [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376093|gb|EEO26184.1| DNA polymerase III subunit epsilon [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 267

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 10/162 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           + DIET G +      IEIG +++ +  K    F+ F+        PE + K+ GI  + 
Sbjct: 73  IVDIETNGHNPCVHTPIEIGTLKVRN-GKVVDCFESFV---FNAEIPEYITKITGINAQM 128

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L++ P  +S+  +F  F  +  + ++AHN  FD  F++  L++     L   R+  T+ +
Sbjct: 129 LENAPKLASVLEKFKLFLGD--SIFVAHNVDFDYNFLSQSLEKCGFGYLYNPRLC-TIKL 185

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           A+R   + R  L  L +  G  I+H++ H AL DS    +++
Sbjct: 186 AQRVLQAPRYSLGFLNEFLG--INHQNLHRALQDSKTALEIF 225


>gi|300773554|ref|ZP_07083423.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300759725|gb|EFK56552.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 316

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 5/106 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG++   DRI+EI  ++++     N+         G     E+   HGI DE +K
Sbjct: 12  FDLETTGVNIPLDRIVEISILKVM--PDGNKEVLTRRINPGMPIPAESSMFHGIYDEDVK 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           D PSF  +  E  DF    +A+   +N+ KFDV  +  E  R N D
Sbjct: 70  DLPSFKELGQEIADFIG--DADLAGYNSNKFDVPMLMEEFLRANVD 113


>gi|116513938|ref|YP_812844.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093253|gb|ABJ58406.1| 3'-5' exonuclease with to CRISPR-associated protein from COG1343
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 290

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 15/171 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGIT 66
           R +  DIETTGL++++D+I+ IGAV+       +   + +       + P + ++L GIT
Sbjct: 125 RFVAVDIETTGLNTESDQILSIGAVK-------HDGIEFYRLIKQDIDVPKQIVELTGIT 177

Query: 67  DEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            E L K+         E  DF    N   + +N +FD  F+N + ++     L  + I D
Sbjct: 178 SEMLSKEGVPLQDALEELTDFVG--NVPIVGYNFRFDSVFLNRDYRKCGMQEL-KNEIKD 234

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            L + +R+     N  L ++   YG  I ++  H A+ D+    ++ +K++
Sbjct: 235 LLPVVKRREKFLDNYKLQTVLSNYG--IENKVPHNAVSDARATKELAMKLI 283


>gi|315646467|ref|ZP_07899585.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex
           V453]
 gi|315278110|gb|EFU41430.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex
           V453]
          Length = 961

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 71/166 (42%), Gaps = 10/166 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  V D ETTG  S  D II++G   + +    +R +  ++ P G    P    L GI+
Sbjct: 1   MKFAVLDFETTGNQSA-DEIIQVGLAIIEEDRSISRVYGTYVNP-GIPIPPFITGLTGIS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D PS   +  E     ++     + HN  FD  F+   L R    P    RI+DT
Sbjct: 59  DSDVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFS-GRILDT 115

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +   +   PS S   L  +   +G  + H   H A  DS  L+  Y
Sbjct: 116 MHFLKICFPSLSSYQLGMVSSHFG--LEHDRPHQA--DSDALATAY 157


>gi|270261613|ref|ZP_06189886.1| ribonuclease T [Serratia odorifera 4Rx13]
 gi|270045097|gb|EFA18188.1| ribonuclease T [Serratia odorifera 4Rx13]
          Length = 226

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 22/195 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIET G ++K D ++EI AV L +D   + + + T    + P  G    PEAL  +G
Sbjct: 31  VVIDIETAGFNAKTDALLEIAAVTLKMDEEGWLQQDETLHFHVEPFEGANLQPEALAFNG 90

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        ++    A  +AHNA FD  F+ A  +R  + 
Sbjct: 91  IDPHNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFLMAAAERASLK 150

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C    I       H AL D+   + ++ ++
Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACIAADIPFDSTQAHSALYDTEQTAQLFCEL 208

Query: 175 M-----VGGSQINFG 184
           +     +GG  +  G
Sbjct: 209 VNRWKRLGGWPLAIG 223


>gi|323140812|ref|ZP_08075727.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414694|gb|EFY05498.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Phascolarctobacterium sp. YIT 12067]
          Length = 304

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 24/173 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEAL-KLHGITD 67
           V DIETTGL  +ND I EI A++   Y    R   F   + P    + P  + +L GI D
Sbjct: 24  VLDIETTGLSPQNDYITEISAIK---YRNNRRVDEFSSLVKP--ELSIPYYITRLTGIND 78

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAEL-----QRINKDPLDPS 121
             + D P+   +   F DF  +   + IA +N  FD+ FI   L     +R+  D     
Sbjct: 79  AMVADAPAIDEVILSFMDFLAD---DIIAGYNVAFDLSFIAENLAGHYAKRLAND----- 130

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +D + +A+ + P       +    Y   I+    H AL+D ++ +  Y K+
Sbjct: 131 -YVDVMKLAQNELPFLGRYKQTAVAEY-FNIATAGAHRALVDCNICNGCYQKL 181


>gi|258510511|ref|YP_003183945.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477237|gb|ACV57556.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 240

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R  + R +V D ETTGL  +  R++E+  VE+    +    +   + P G    PEA  
Sbjct: 1   MRLQEARFVVVDTETTGLPPEG-RVVELALVEVGLEREPQIVYSALVDP-GCPIPPEASA 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           +H ITD  +  KP    ++ +  ++    +A  +AHNA+FD G +
Sbjct: 59  VHHITDRDVAGKPRLFQVWPKVLEYIG--DAILVAHNAEFDRGML 101


>gi|215486829|ref|YP_002329260.1| ribonuclease T [Escherichia coli O127:H6 str. E2348/69]
 gi|312966583|ref|ZP_07780803.1| ribonuclease T [Escherichia coli 2362-75]
 gi|331647141|ref|ZP_08348235.1| ribonuclease T [Escherichia coli M605]
 gi|331657625|ref|ZP_08358587.1| ribonuclease T [Escherichia coli TA206]
 gi|215264901|emb|CAS09287.1| ribonuclease T (RNase T) [Escherichia coli O127:H6 str. E2348/69]
 gi|281178725|dbj|BAI55055.1| ribonuclease T [Escherichia coli SE15]
 gi|312288693|gb|EFR16593.1| ribonuclease T [Escherichia coli 2362-75]
 gi|315299705|gb|EFU58947.1| ribonuclease T [Escherichia coli MS 16-3]
 gi|330911459|gb|EGH39969.1| ribonuclease T [Escherichia coli AA86]
 gi|331043924|gb|EGI16060.1| ribonuclease T [Escherichia coli M605]
 gi|331055873|gb|EGI27882.1| ribonuclease T [Escherichia coli TA206]
          Length = 215

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112
           I D    D+ + S  +    + F              A  +AHNA FD  F+ A  +R  
Sbjct: 80  I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 137

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   + ++ 
Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195

Query: 173 KMM 175
           +++
Sbjct: 196 EIV 198


>gi|330952959|gb|EGH53219.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae Cit 7]
          Length = 203

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+   +  R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 3   RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF    +   +AHNA FD  F + EL RI +          
Sbjct: 60  SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIQRT--REQSFAC 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +L +ARR  P + N       RY         H A+ D+ + +++
Sbjct: 116 SLLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANL 160


>gi|269955496|ref|YP_003325285.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304177|gb|ACZ29727.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 247

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 18/155 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD ETTG+D  NDRI+    V  L     +   + +L   G +   EA  +HG+T E 
Sbjct: 19  VGFDTETTGVDVANDRIVTAAVV--LRIPGVSTDVRTWLVDPGVEIPAEAAAIHGVTTEH 76

Query: 70  LKD---KPSFS--SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-- 122
            +     P+ +   I +E      E     +A+NA FD+  ++AEL R     L P R  
Sbjct: 77  ARAHGVAPAVALEEIAAELAAHLRE-GVPVVAYNAAFDLSLLDAELARHGLATL-PERLG 134

Query: 123 -----IIDTLSIARR--KHPSSRNDLNSLCKRYGI 150
                ++D L + R   ++   +  L  L   YG+
Sbjct: 135 RAVTPVLDPLVLDRWQDRYRRGKRRLGDLVTHYGV 169


>gi|225012673|ref|ZP_03703108.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium
           MS024-2A]
 gi|225003206|gb|EEG41181.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium
           MS024-2A]
          Length = 257

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 15/111 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSP-EALKLHGIT 66
           FD+ETTG D   DRI+EI  ++L    L   K  RT       N  +  P EA  +HGIT
Sbjct: 12  FDLETTGTDISKDRIVEIAVLKLHPDGLQEKKEWRT-------NPEQPIPAEASAVHGIT 64

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           DE +  +P+F  + +E + F   +  +   +N+ +FD+  +  EL R   D
Sbjct: 65  DEMVASEPTFKELSNEIYSFI--KGCDLAGYNSDRFDIPLLVEELLRAEVD 113


>gi|16129610|ref|NP_416169.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89108494|ref|AP_002274.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. W3110]
 gi|170081315|ref|YP_001730635.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B]
 gi|238900868|ref|YP_002926664.1| ribonuclease T (RNase T) [Escherichia coli BW2952]
 gi|300951237|ref|ZP_07165090.1| ribonuclease T [Escherichia coli MS 116-1]
 gi|300958527|ref|ZP_07170660.1| ribonuclease T [Escherichia coli MS 175-1]
 gi|301027673|ref|ZP_07190989.1| ribonuclease T [Escherichia coli MS 196-1]
 gi|301647832|ref|ZP_07247616.1| ribonuclease T [Escherichia coli MS 146-1]
 gi|307138309|ref|ZP_07497665.1| ribonuclease T [Escherichia coli H736]
 gi|331642247|ref|ZP_08343382.1| ribonuclease T [Escherichia coli H736]
 gi|266952|sp|P30014|RNT_ECOLI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|147688|gb|AAC37008.1| RNaseT [Escherichia coli]
 gi|1787941|gb|AAC74724.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675063|dbj|BAA15418.2| ribonuclease T (RNase T) [Escherichia coli str. K12 substr. W3110]
 gi|169889150|gb|ACB02857.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B]
 gi|238863473|gb|ACR65471.1| ribonuclease T (RNase T) [Escherichia coli BW2952]
 gi|260449223|gb|ACX39645.1| ribonuclease T [Escherichia coli DH1]
 gi|299879216|gb|EFI87427.1| ribonuclease T [Escherichia coli MS 196-1]
 gi|300314801|gb|EFJ64585.1| ribonuclease T [Escherichia coli MS 175-1]
 gi|300449493|gb|EFK13113.1| ribonuclease T [Escherichia coli MS 116-1]
 gi|301074022|gb|EFK88828.1| ribonuclease T [Escherichia coli MS 146-1]
 gi|309701879|emb|CBJ01191.1| ribonuclease T [Escherichia coli ETEC H10407]
 gi|315136293|dbj|BAJ43452.1| ribonuclease T [Escherichia coli DH1]
 gi|315618843|gb|EFU99426.1| ribonuclease T [Escherichia coli 3431]
 gi|323937257|gb|EGB33536.1| ribonuclease T [Escherichia coli E1520]
 gi|323940680|gb|EGB36871.1| ribonuclease T [Escherichia coli E482]
 gi|331039045|gb|EGI11265.1| ribonuclease T [Escherichia coli H736]
          Length = 215

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112
           I D    D+ + S  +    + F              A  +AHNA FD  F+ A  +R  
Sbjct: 80  I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 137

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   + ++ 
Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195

Query: 173 KMM 175
           +++
Sbjct: 196 EIV 198


>gi|327404630|ref|YP_004345468.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823]
 gi|327320138|gb|AEA44630.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM
           16823]
          Length = 284

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 24/171 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV------ELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
           ++ D+ETTGLD   DRIIEI  +      E  +Y K  N T  +         S E+ ++
Sbjct: 10  VMLDLETTGLDVAKDRIIEIALIKTTPTGEQSEYCKRVNPTIPI---------SKESAEI 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDP 120
            GITDE +  +P+F  +  E   F    +A+   +N+ KFD+  +  E  RI+    ++ 
Sbjct: 61  TGITDEMVATEPTFEQLADEIAAFIG--DADLGGYNSNKFDIPVLAEEFLRISHSFKIND 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            + ID  +I    H   +  L +  + Y       + H AL D+ +  DV+
Sbjct: 119 RKFIDVQNIF---HKMEQRTLAAAYQFY-CKEPMENAHNALYDTKVTLDVF 165


>gi|15240411|ref|NP_198046.1| exonuclease family protein [Arabidopsis thaliana]
 gi|30690464|ref|NP_851082.1| exonuclease family protein [Arabidopsis thaliana]
 gi|30690468|ref|NP_851083.1| exonuclease family protein [Arabidopsis thaliana]
 gi|42573491|ref|NP_974842.1| exonuclease family protein [Arabidopsis thaliana]
 gi|51968684|dbj|BAD43034.1| unknown protein [Arabidopsis thaliana]
 gi|108385373|gb|ABF85778.1| At5g26940 [Arabidopsis thaliana]
 gi|332006246|gb|AED93629.1| exonuclease family protein [Arabidopsis thaliana]
 gi|332006247|gb|AED93630.1| exonuclease family protein [Arabidopsis thaliana]
 gi|332006248|gb|AED93631.1| exonuclease family protein [Arabidopsis thaliana]
 gi|332006249|gb|AED93632.1| exonuclease family protein [Arabidopsis thaliana]
          Length = 316

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 19/181 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D+ETTGL  KN+RIIEI A ++     +  TFQ  + P G      A  +HGI ++ 
Sbjct: 112 IVSDLETTGLHRKNERIIEIAAQDIAGGGYS--TFQTLVNP-GVVPITNA-HIHGIRNDM 167

Query: 70  L--KDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAK-FDVGFINAELQRINKDPLDPS 121
           +   + P    +   F  +   +         +AHN K FD  F+  E  R + +     
Sbjct: 168 VCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNW 227

Query: 122 RIIDTLSIARRKHPSSR------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++D+L +AR    S        + L +L   Y +T      H AL D  LLS V+ K+ 
Sbjct: 228 LLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLT-REGDAHRALSDVLLLSKVFQKLT 286

Query: 176 V 176
           +
Sbjct: 287 I 287


>gi|238919999|ref|YP_002933514.1| ribonuclease T [Edwardsiella ictaluri 93-146]
 gi|238869568|gb|ACR69279.1| ribonuclease T, putative [Edwardsiella ictaluri 93-146]
          Length = 221

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D+  + ++EI AV L      + +T++     + P  G + SPEAL  +G
Sbjct: 20  VVIDVETAGFDANRNALLEIAAVTLRMNDDGWLETDQCLHFHIDPFEGAELSPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +Q    A  +AHNA FD  F+ A   R  + 
Sbjct: 80  IDPHNPLRGAVSEYTALHAIFKMVRKGIKDQACNRAVVVAHNAHFDHSFLMAAAARAGLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C    I       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACISAQIPFDSAQAHSALYDTQQTATLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|156303079|ref|XP_001617467.1| hypothetical protein NEMVEDRAFT_v1g226058 [Nematostella vectensis]
 gi|156193984|gb|EDO25367.1| predicted protein [Nematostella vectensis]
          Length = 256

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 27/117 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS------------PEA 59
           FD+ETTG+D   DRI+EI              F+VF  PNG K S            P+ 
Sbjct: 12  FDLETTGIDVARDRIVEISV------------FKVF--PNGNKESKTWLVNPTIPIPPQT 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
             +HGITDE + ++P+F+ +    ++   + +     ++ +FD+  +  EL R   D
Sbjct: 58  TAVHGITDEKVANEPTFNELAPHVYNMIKDSDLAGF-NSDRFDIPLLAEELLRAGVD 113


>gi|330969506|gb|EGH69572.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 203

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+   +  R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 3   RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF    +   +AHNA FD  F + EL RI +          
Sbjct: 60  SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIQRT--REQSFAC 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +L +ARR  P + N       RY         H A+ D+ + +++
Sbjct: 116 SLLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANL 160


>gi|323462912|pdb|3NH0|A Chain A, Crystal Structure Of Rnase T In Complex With A
           Non-Preferred Ssdna (Aac)
 gi|323462913|pdb|3NH0|B Chain B, Crystal Structure Of Rnase T In Complex With A
           Non-Preferred Ssdna (Aac)
 gi|323462916|pdb|3NH1|A Chain A, Crystal Structure Of Rnase T In Complex With A Preferred
           Ssdna (Tagg) With Two Mg In The Active Site
 gi|323462917|pdb|3NH1|B Chain B, Crystal Structure Of Rnase T In Complex With A Preferred
           Ssdna (Tagg) With Two Mg In The Active Site
 gi|323462918|pdb|3NH1|C Chain C, Crystal Structure Of Rnase T In Complex With A Preferred
           Ssdna (Tagg) With Two Mg In The Active Site
 gi|323462919|pdb|3NH1|D Chain D, Crystal Structure Of Rnase T In Complex With A Preferred
           Ssdna (Tagg) With Two Mg In The Active Site
 gi|323462924|pdb|3NH2|A Chain A, Crystal Structure Of Rnase T In Complex With A Stem Dna
           With A 3' Overhang
 gi|323462925|pdb|3NH2|B Chain B, Crystal Structure Of Rnase T In Complex With A Stem Dna
           With A 3' Overhang
 gi|323462928|pdb|3NH2|E Chain E, Crystal Structure Of Rnase T In Complex With A Stem Dna
           With A 3' Overhang
 gi|323462929|pdb|3NH2|F Chain F, Crystal Structure Of Rnase T In Complex With A Stem Dna
           With A 3' Overhang
          Length = 235

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 40  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 99

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112
           I D    D+ + S  +    + F              A  +AHNA FD  F+ A  +R  
Sbjct: 100 I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 157

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   + ++ 
Sbjct: 158 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 215

Query: 173 KMM 175
           +++
Sbjct: 216 EIV 218


>gi|227536554|ref|ZP_03966603.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243631|gb|EEI93646.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 316

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 5/106 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG++   DRI+EI  ++++     N+         G     E+   HGI DE +K
Sbjct: 12  FDLETTGVNIPLDRIVEISILKVM--PDGNKEVLTRRINPGMPIPAESSMFHGIYDEDVK 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           D PSF  +  E  DF    +A+   +N+ KFDV  +  E  R N D
Sbjct: 70  DLPSFKELGQEIADFIG--DADLAGYNSNKFDVPMLMEEFLRANVD 113


>gi|199598401|ref|ZP_03211820.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001]
 gi|258508490|ref|YP_003171241.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
           rhamnosus GG]
 gi|199590720|gb|EDY98807.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001]
 gi|257148417|emb|CAR87390.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus
           rhamnosus GG]
 gi|259649800|dbj|BAI41962.1| DNA helicase [Lactobacillus rhamnosus GG]
          Length = 933

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 11/157 (7%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D+ETTG   K+ DR+I+ G   L+ + K  +T    + P+  ++ P+ + +L GI+ E
Sbjct: 9   VVDLETTGTSVKDGDRMIQFGCA-LVRHGKIIQTISQMINPD--RSVPQTIQRLTGISPE 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  +         +    ++AHN  FD  F+NAE +RI    L     IDT+ 
Sbjct: 66  RLVAAPYFDEVAPALHQVLTK--TVFVAHNVNFDYPFLNAEFERIGLPKLQ-LEAIDTVE 122

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           +A+   P  S   L+ L   +   I H + H A  D+
Sbjct: 123 LAQVLLPEISSFRLSDLTTHFA--IQHDNPHQADSDA 157


>gi|229552292|ref|ZP_04441017.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           rhamnosus LMS2-1]
 gi|258539701|ref|YP_003174200.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
           rhamnosus Lc 705]
 gi|229314364|gb|EEN80337.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           rhamnosus LMS2-1]
 gi|257151377|emb|CAR90349.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus
           rhamnosus Lc 705]
          Length = 933

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 11/157 (7%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D+ETTG   K+ DR+I+ G   L+ + K  +T    + P+  ++ P+ + +L GI+ E
Sbjct: 9   VVDLETTGTSVKDGDRMIQFGCA-LVRHGKIIQTISQMINPD--RSVPQTIQRLTGISPE 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  +         +    ++AHN  FD  F+NAE +RI    L     IDT+ 
Sbjct: 66  RLVAAPYFDEVAPALHQVLTK--TVFVAHNVNFDYPFLNAEFERIGLPKLQ-LEAIDTVE 122

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           +A+   P  S   L+ L   +   I H + H A  D+
Sbjct: 123 LAQVLLPEISSFRLSDLTTHFA--IQHDNPHQADSDA 157


>gi|227890751|ref|ZP_04008556.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           salivarius ATCC 11741]
 gi|227867160|gb|EEJ74581.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           salivarius ATCC 11741]
          Length = 937

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 13/168 (7%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRT---FQVFLCPNGRKNSPEALKLHGIT 66
           V D+ETTG     +D+II+       D+ ++N+    F   + P G     E  KL GI 
Sbjct: 17  VVDLETTGPKQDGSDKIIQFSC----DFVQSNKIVNHFSTLINP-GMPIPAEVKKLTGIK 71

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ ++  P F  +    +     QN  ++AHN  FD  F+++EL+R     L+   ++DT
Sbjct: 72  DKDVRYAPYFDEVAGTIYAML--QNTTFVAHNVNFDYSFLSSELERAGYPELELP-MMDT 128

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + + +  +P+  +       +Y + +SH   H A  D+   +++ I +
Sbjct: 129 VQLTQIIYPTLVSYRLIDVSKY-LQLSHIHPHKADSDTKATAELLINL 175


>gi|182418640|ref|ZP_02949917.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521]
 gi|237668503|ref|ZP_04528487.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377502|gb|EDT75056.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521]
 gi|237656851|gb|EEP54407.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 308

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 109/257 (42%), Gaps = 40/257 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      IG V ++  S+        + P   +  P  + +HGI 
Sbjct: 1   MDYIAIDFETA--NEKRSSPCSIGIV-VVKNSEVVEKIHYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++++P F  I+     +F+  N   IAHNA FD+  +   ++  N +P+   + I T
Sbjct: 58  PGMVENEPEFDEIWKRIKGYFD--NGFVIAHNASFDISVLRRTMELYNIEPVS-FKYICT 114

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM----------- 174
           + +++  +P   N  LN++ +  G    H   H AL D+   S++ I +           
Sbjct: 115 MKLSKNFYPQIENSKLNTVNRFLGYEFDH---HDALADALACSNILINISKELGNEDIDE 171

Query: 175 ---MVGGSQINF---GFK--TNEDRFFKEEKKTV----------PNISLLKRDKPLFT-R 215
               VG +  N    G+K  + + R F++  +            PN  + K D  +FT R
Sbjct: 172 ICRCVGVTIGNVNEEGYKPSSAKGRIFRKSSRVSSCNNSNSLGNPNYDVFKGDTVVFTGR 231

Query: 216 ITKEELDEHDKTIQTLG 232
           ++    DE  + ++ LG
Sbjct: 232 LSSMTRDEAIRLVRRLG 248


>gi|288928331|ref|ZP_06422178.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331165|gb|EFC69749.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108]
          Length = 284

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 9/141 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGLD  NDRII+I  +++    K  R   + + P  R    E  +L GIT + 
Sbjct: 10  VVFDLETTGLDLVNDRIIQISYIKIYPDGKEERE-NLLVYPQ-RPIPDEVSELTGITTDL 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD-PLDPSRIIDTL 127
           ++D P+F  +     + F  +  ++   N+  FD+  +  E  R   D     +R+ID  
Sbjct: 68  VEDAPTFEELAPRLNEVF--KGCDFAGFNSNHFDIPMLAEEFLRAEIDFDFSSARLIDAQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
           +I    H   + +L +  K Y
Sbjct: 126 TIF---HKMEKRNLAAAYKFY 143


>gi|93006690|ref|YP_581127.1| ribonuclease T [Psychrobacter cryohalolentis K5]
 gi|92394368|gb|ABE75643.1| RNAse T [Psychrobacter cryohalolentis K5]
          Length = 246

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 20/191 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R  K   +V D+ET G +++ D ++EI  + +L   +        F   + P  G    P
Sbjct: 33  RFRKFLPVVVDVETAGFNAQTDALLEIACIPVLLNEQGVFYPGEAFNAHIEPFEGANLEP 92

Query: 58  EALKLHGI-TDEFLK------DKPSFSSIF---SEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            AL   GI  +  L+      +K +   IF    E     + +    I HNA FD+ F+N
Sbjct: 93  SALAFTGIDPNNPLRKAIAEDEKTALRRIFKGLKEVRRIEDCRQCVLIGHNAHFDLAFLN 152

Query: 108 AELQRINK---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A + R N    +P     + DT++++       +  L   CK  G+       H AL D+
Sbjct: 153 AAVLRTNNKSHNPFHNFSVFDTVTLSALAF--GQTVLARACKAAGLDFDGNDAHSALYDT 210

Query: 165 HLLSDVYIKMM 175
              ++++  ++
Sbjct: 211 QKTAELFCYIL 221


>gi|332293348|ref|YP_004431957.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171434|gb|AEE20689.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 466

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 7/148 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG     +RI EI AV L D    ++ F   + P  +   P    L GI D  +
Sbjct: 11  VIDVETTGKGINGNRITEICAVRLKDGEVVDK-FTSLVNPE-QYIPPFITNLTGIDDAMV 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P F+ I     +      A ++AHN  FD   + +E +R+        + + T+ ++
Sbjct: 69  ADAPLFNEIADRIIEI--SSGAIFVAHNVTFDFNVLRSEFKRLGHS--FTRKKLCTVRLS 124

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK 157
           R+  PS  +  L +LC   GI +++R +
Sbjct: 125 RKLIPSLFSYSLGNLCASIGIPLNNRHR 152


>gi|331683160|ref|ZP_08383761.1| ribonuclease T [Escherichia coli H299]
 gi|331079375|gb|EGI50572.1| ribonuclease T [Escherichia coli H299]
          Length = 215

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112
           I D    D+ + S  +    + F              A  +AHNA FD  F+ A  +R  
Sbjct: 80  I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHNFMMAAAERAS 137

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   + ++ 
Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195

Query: 173 KMM 175
           +++
Sbjct: 196 EIV 198


>gi|297191229|ref|ZP_06908627.1| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297150828|gb|EDY62400.2| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 259

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 21/160 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68
           + FD+ETTG D  + RI+    VEL            ++   G     +A  +HGI++E 
Sbjct: 28  VGFDLETTGTDPLDARIVTAAVVELRAGEPVRS--HGWMADPGISIPAQASAIHGISNER 85

Query: 69  -FLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQ---------RINK 115
              + +P+   +  E  D       Q    +A+NA FD+  + AELQ         R++ 
Sbjct: 86  ASAEGRPA-REVAEEIADTLTAHWRQGVPVVAYNAAFDLTLLAAELQRHGLPSLGERLDG 144

Query: 116 DPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITIS 153
            P+ P  +ID  +I R   ++   +  L ++C  YG+ + 
Sbjct: 145 RPIGP--VIDPYTIDRAVDRYRKGKRTLEAVCVEYGVLLG 182


>gi|21592760|gb|AAM64709.1| unknown [Arabidopsis thaliana]
          Length = 316

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 19/181 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D+ETTGL  KN+RIIEI A ++     +  TFQ  + P G      A  +HGI ++ 
Sbjct: 112 IVSDLETTGLHRKNERIIEIAAQDIAGGGYS--TFQTLVNP-GVVPITNA-HIHGIRNDM 167

Query: 70  L--KDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAK-FDVGFINAELQRINKDPLDPS 121
           +   + P    +   F  +   +         +AHN K FD  F+  E  R + +     
Sbjct: 168 VCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNW 227

Query: 122 RIIDTLSIARRKHPSSR------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++D+L +AR    S        + L +L   Y +T      H AL D  LLS V+ K+ 
Sbjct: 228 LLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLT-REGDAHRALSDVLLLSKVFQKLT 286

Query: 176 V 176
           +
Sbjct: 287 I 287


>gi|161503473|ref|YP_001570585.1| ribonuclease T [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|204927787|ref|ZP_03218988.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205352852|ref|YP_002226653.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207857062|ref|YP_002243713.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|160864820|gb|ABX21443.1| hypothetical protein SARI_01547 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|204323129|gb|EDZ08325.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205272633|emb|CAR37543.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206708865|emb|CAR33195.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326627923|gb|EGE34266.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 215

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P    N  PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        E     A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|186895675|ref|YP_001872787.1| ribonuclease T [Yersinia pseudotuberculosis PB1/+]
 gi|186698701|gb|ACC89330.1| ribonuclease T [Yersinia pseudotuberculosis PB1/+]
          Length = 226

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++++D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF        ++    A  +AHNA FD  F+ A  +R  + 
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 150

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ ++
Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCEL 208

Query: 175 M 175
           +
Sbjct: 209 V 209


>gi|206580062|ref|YP_002238188.1| ribonuclease T [Klebsiella pneumoniae 342]
 gi|288935177|ref|YP_003439236.1| ribonuclease T [Klebsiella variicola At-22]
 gi|290509235|ref|ZP_06548606.1| ribonuclease T [Klebsiella sp. 1_1_55]
 gi|206569120|gb|ACI10896.1| ribonuclease T [Klebsiella pneumoniae 342]
 gi|288889886|gb|ADC58204.1| ribonuclease T [Klebsiella variicola At-22]
 gi|289778629|gb|EFD86626.1| ribonuclease T [Klebsiella sp. 1_1_55]
          Length = 215

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGF--INAELQRIN 114
           I         + +  +  +IF        E +   A  +AHNA FD  F    AE   + 
Sbjct: 80  INPHDPERGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACIAAGMAFDGAQAHSALYDTEQTAQLFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|66047527|ref|YP_237368.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           syringae B728a]
 gi|63258234|gb|AAY39330.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           syringae B728a]
          Length = 204

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+   +  R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 4   RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF    +   +AHNA FD  F + EL RI +          
Sbjct: 61  SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIQRT--REQSFAC 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +L +ARR  P + N       RY         H A+ D+ + +++
Sbjct: 117 SLLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANL 161


>gi|330938176|gb|EGH41873.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 203

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+   +  R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 3   RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF    +   +AHNA FD  F + EL RI +          
Sbjct: 60  SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIERT--REQSFAC 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +L +ARR  P + N       RY         H A+ D+ + +++
Sbjct: 116 SLLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANL 160


>gi|309807500|ref|ZP_07701459.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
 gi|308169250|gb|EFO71309.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
          Length = 234

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 16/180 (8%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   K +DRII+ G   + D  K  +T+   + P   K  P A++ L GI+++
Sbjct: 6   VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+ 
Sbjct: 63  EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 119

Query: 129 IARRKHPSS-----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-MVGGSQIN 182
           +A+   P+      ++  N+L  ++     HR+   AL+ + +L  +  K+ M+  + +N
Sbjct: 120 LAQIAFPTIPSYKLQDITNTLHIKHA--NPHRADSDALVTAKMLLKIIDKIEMLPTATLN 177


>gi|300717064|ref|YP_003741867.1| exodeoxyribonuclease X [Erwinia billingiae Eb661]
 gi|299062900|emb|CAX60020.1| Exodeoxyribonuclease X [Erwinia billingiae Eb661]
          Length = 221

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+E+ +V+++D  K        +CP+ R  SP A+ +H IT+  +
Sbjct: 4   VIDTETCGLQGG---IVEVASVDVID-GKIVNPMSDLICPD-RPISPHAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP        +       +  ++AHNA FD   +          P      I T+++A
Sbjct: 59  ADKPPIEHAIGRY-----HGSPYYVAHNASFDRRML----------PEMHGEWICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           R   P  +    +L +   + ++  +    H AL D ++ + + I++M
Sbjct: 104 RGLWPGIKYSNQALRETLKLEVTPPADLHAHRALYDCYVTAALLIRIM 151


>gi|323340217|ref|ZP_08080481.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           ruminis ATCC 25644]
 gi|323092408|gb|EFZ35016.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           ruminis ATCC 25644]
          Length = 180

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 11/140 (7%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +HGI  + + D P FS ++     FF  ++   +AHNA FD   +   L++       
Sbjct: 50  IAIHGIKPQMVADSPDFSELWPHIESFFTPESL-VVAHNAPFDCSVLTRTLEKYGIAA-- 106

Query: 120 PS-RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           P   +IDT+  +++ +    N L++LC+   I ++H   H AL DS   + + +  +   
Sbjct: 107 PHFNVIDTVKTSKQFYDFQDNKLDTLCQNLDIDLAHH--HNALDDSQACAKILLSQLQ-- 162

Query: 179 SQINFGFKTNEDRFFKEEKK 198
              NFG  T +   +K  +K
Sbjct: 163 ---NFGSDTLKSFIYKYPRK 179


>gi|330976913|gb|EGH76936.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 203

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+   +  R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 3   RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF    +   +AHNA FD  F + EL RI +          
Sbjct: 60  SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIERT--REQSFAC 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +L +ARR  P + N       RY         H A+ D+ + +++
Sbjct: 116 SLLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANL 160


>gi|309809881|ref|ZP_07703731.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308169833|gb|EFO71876.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 233

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 16/180 (8%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   K +DRII+ G   + D  K  +T+   + P   K  P A++ L GI+++
Sbjct: 13  VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+ 
Sbjct: 70  EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126

Query: 129 IARRKHPSS-----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-MVGGSQIN 182
           +A+   P+      ++  N+L  ++     HR+   AL+ + +L  +  K+ M+  + +N
Sbjct: 127 LAQIAFPTIPSYKLQDITNTLHIKHA--NPHRADSDALVTAKMLLKIIEKIEMLPTATLN 184


>gi|217032955|ref|ZP_03438429.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128]
 gi|216945324|gb|EEC23998.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128]
          Length = 287

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GIT E   
Sbjct: 77  DLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 132

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 133 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221


>gi|88801444|ref|ZP_01116972.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P]
 gi|88782102|gb|EAR13279.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P]
          Length = 462

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 11/165 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65
           M   V DIETTG   K  +I EI A+ + D  K    F   + P   +N P  +  L GI
Sbjct: 1   MLYAVVDIETTGNGPKGQKITEISAL-IFDGKKIVDEFTSLVNP--EQNIPAFITSLTGI 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+  +++ P F  I  +  +    +N  ++AHN  FD   I AE + +  D     + + 
Sbjct: 58  TNAMVRNAPRFFEIAKKVAEI--TENTIFVAHNVNFDYNIIQAEFKSLGFD--FKRKKLC 113

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHLL 167
           T+ + R+  P      L ++C    I I+  HR+K  A   + LL
Sbjct: 114 TIRLTRKIIPGLPSYSLGNICTGENIPINGRHRAKGDAEATAELL 158


>gi|108807723|ref|YP_651639.1| ribonuclease T [Yersinia pestis Antiqua]
 gi|108811999|ref|YP_647766.1| ribonuclease T [Yersinia pestis Nepal516]
 gi|162420848|ref|YP_001606979.1| ribonuclease T [Yersinia pestis Angola]
 gi|165926445|ref|ZP_02222277.1| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165938652|ref|ZP_02227208.1| ribonuclease T [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010664|ref|ZP_02231562.1| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211013|ref|ZP_02237048.1| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167400761|ref|ZP_02306267.1| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167422151|ref|ZP_02313904.1| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167424940|ref|ZP_02316693.1| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|270490511|ref|ZP_06207585.1| ribonuclease T [Yersinia pestis KIM D27]
 gi|294503612|ref|YP_003567674.1| ribonuclease T [Yersinia pestis Z176003]
 gi|108775647|gb|ABG18166.1| RNAse T [Yersinia pestis Nepal516]
 gi|108779636|gb|ABG13694.1| RNAse T [Yersinia pestis Antiqua]
 gi|162353663|gb|ABX87611.1| ribonuclease T [Yersinia pestis Angola]
 gi|165913526|gb|EDR32147.1| ribonuclease T [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921666|gb|EDR38863.1| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165990366|gb|EDR42667.1| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166208193|gb|EDR52673.1| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166958963|gb|EDR55984.1| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167049614|gb|EDR61022.1| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167056127|gb|EDR65905.1| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|262361655|gb|ACY58376.1| ribonuclease T [Yersinia pestis D106004]
 gi|262365605|gb|ACY62162.1| ribonuclease T [Yersinia pestis D182038]
 gi|270339015|gb|EFA49792.1| ribonuclease T [Yersinia pestis KIM D27]
 gi|294354071|gb|ADE64412.1| ribonuclease T [Yersinia pestis Z176003]
          Length = 226

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++++D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF        ++    A  +AHNA FD  F+ A  +R  + 
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 150

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ ++
Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCEL 208

Query: 175 M 175
           +
Sbjct: 209 V 209


>gi|229488668|ref|ZP_04382534.1| DNA polymerase III subunit epsilon [Rhodococcus erythropolis SK121]
 gi|229324172|gb|EEN89927.1| DNA polymerase III subunit epsilon [Rhodococcus erythropolis SK121]
          Length = 226

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 9/148 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF- 69
            FD+ETTG D    RI+    V ++D S      + +L   G      A  +HGI+ EF 
Sbjct: 11  AFDLETTGRDPSTARIVS-ACVAVIDGSSVET--RTWLLDPGVDIPAGASAVHGISTEFA 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +    +S  + E  +  +   A     +A NA +D+  ++AE  RI K    P  +ID 
Sbjct: 68  AQHGQDYSEGYEEIREALHNSWARDHAVVAFNASYDLTVMHAEGLRIGKPAFVPGLVIDP 127

Query: 127 LSIARRKHP--SSRNDLNSLCKRYGITI 152
             I R        +  L ++C+ YGI++
Sbjct: 128 YVIDRAMDTFRKGKRTLAAVCEHYGISL 155


>gi|145598067|ref|YP_001162143.1| ribonuclease T [Yersinia pestis Pestoides F]
 gi|170024107|ref|YP_001720612.1| ribonuclease T [Yersinia pseudotuberculosis YPIII]
 gi|145209763|gb|ABP39170.1| RNAse T [Yersinia pestis Pestoides F]
 gi|169750641|gb|ACA68159.1| ribonuclease T [Yersinia pseudotuberculosis YPIII]
          Length = 226

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++++D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 31  VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF        ++    A  +AHNA FD  F+ A  +R  + 
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 150

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ ++
Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCEL 208

Query: 175 M 175
           +
Sbjct: 209 V 209


>gi|146306423|ref|YP_001186888.1| ribonuclease T [Pseudomonas mendocina ymp]
 gi|145574624|gb|ABP84156.1| RNAse T [Pseudomonas mendocina ymp]
          Length = 224

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 31/188 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-----------GRKNSP 57
           +V D+ET G +S  D ++EI A  + +D S        FL P+           G     
Sbjct: 32  VVVDVETGGFNSATDALLEIAATTIAMDESG-------FLYPDHTHFFRIEPFEGANIEA 84

Query: 58  EALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAE 109
            AL+  GI  D  L+   S      E +    +       + A  + HN+ FD+GF+NA 
Sbjct: 85  AALEFTGIKLDHPLRMAVSEEHALGEIFKGLRKSIKSAGCKRAILVGHNSSFDLGFLNAA 144

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           + R  I ++P  P    DT ++A   +   +  L   C+  GI    +  H A  D+   
Sbjct: 145 VARCGIKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIEFDGKEAHSARYDTEKT 202

Query: 168 SDVYIKMM 175
           ++++  ++
Sbjct: 203 AELFCGIV 210


>gi|289675841|ref|ZP_06496731.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           syringae FF5]
          Length = 204

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+   +  R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 4   RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF    +   +AHNA FD  F + EL RI +          
Sbjct: 61  SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIERT--REQSFAC 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +L +ARR  P + N       RY         H A+ D+ + +++
Sbjct: 117 SLLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANL 161


>gi|269941365|emb|CBI49762.1| putative exonuclease [Staphylococcus aureus subsp. aureus TW20]
          Length = 184

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 9/166 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   + K   I  +G V+++D S+  +TF   + P     S + +K+HGI  E 
Sbjct: 7   VALDFETA--NGKRTSICSVGMVKVID-SQITKTFHTLVNPQDYF-SQQNIKIHGIQPED 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ P+F  +F     F  +     +AHNA FD+  ++  +Q I   P        +  +
Sbjct: 63  VENAPTFDYVFPYMMQFIAD--LPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQL 119

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+R   S R  L  + + Y   +     H AL D+   + +  +++
Sbjct: 120 AKRTVDSYRYGLKHMMEFY--QLDFHGHHDALNDAKACAMITFRLL 163


>gi|228471317|ref|ZP_04056120.1| exonuclease [Porphyromonas uenonis 60-3]
 gi|228306894|gb|EEK16002.1| exonuclease [Porphyromonas uenonis 60-3]
          Length = 255

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGITD 67
           + FDIE TGLD  NDRIIE+  ++L+ D  +  RT +     N     P E+  +HGITD
Sbjct: 10  VFFDIEATGLDITNDRIIELTILKLMPDGERIVRTRRF----NPEMPIPAESTAIHGITD 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIID 125
           + ++D P F +      +  +    +   +N+ +FD+  +  E  R   +  L   + ID
Sbjct: 66  DDVRDCPPFRACAKSLAELID--GCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLAMQHID 123

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +I  +  P +    +   C R      H   HGA  D+    DV +  +
Sbjct: 124 VQTIFHKMEPRTLEGAVRFYCHR-----EHIGAHGAEADTIATLDVLMAQL 169


>gi|323339821|ref|ZP_08080090.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644]
 gi|323092694|gb|EFZ35297.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644]
          Length = 968

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 9/164 (5%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+E TG + + ++R+I+   V   + +K   TF   + P  RK   +   L  ITD+ 
Sbjct: 42  VVDLEMTGTNPNGSERLIQFSCV-FTEGNKIVNTFSTLINPL-RKIPEDVQNLTNITDKD 99

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K  P+F  +    +   +  +  ++AHN + D  F+N+E +RI    LD    IDT+ +
Sbjct: 100 VKSAPTFDEVAGTIYALLS--DTVFVAHNIELDYRFLNSEFERIGFPKLDLEG-IDTVQL 156

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           A+   P+ +   L  L    G    H+  H A  D+ + ++++I
Sbjct: 157 AQIAFPTLASYRLGDLAHFLG--FKHKHPHHADSDAFVTAELFI 198


>gi|149374321|ref|ZP_01892095.1| ribonuclease T [Marinobacter algicola DG893]
 gi|149361024|gb|EDM49474.1| ribonuclease T [Marinobacter algicola DG893]
          Length = 211

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++EI AV L      + K   T    + P  G      AL   G
Sbjct: 11  VVVDVETGGFNPEKDALLEIAAVILTMDDDGWLKRAETHVQQIDPFEGANLEQSALDFTG 70

Query: 65  ITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I       E + ++   S IF          +   A  + HNA FD  F+ A   R  I 
Sbjct: 71  IDPWNPEREAVPEREGMSEIFGPIRKAVKAHDCKRAVLVGHNATFDHNFVFAAALRSDIR 130

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +      L   CK  GI  S++  H A  D+   +D++  +
Sbjct: 131 RNPFHPFSTFDTATLAGLAY--GHTVLAQACKLAGIPFSNKDAHSAAYDAEKTADLFCGI 188

Query: 175 M 175
           +
Sbjct: 189 V 189


>gi|94263435|ref|ZP_01287248.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
 gi|94270278|ref|ZP_01291698.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
 gi|93450870|gb|EAT01889.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
 gi|93456165|gb|EAT06304.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
          Length = 238

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 19/184 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD E TGLD + D I+ IGAV + +       TF V + P+        L +H +T  
Sbjct: 41  VVFDTELTGLDRRRDEIVSIGAVRINNLRIMVGDTFYVQVKPSQALPKDSTL-IHRLTPH 99

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P  +++   F D+  +  +  + H    DV F+N    R     L  +  +DT+ 
Sbjct: 100 QLSDAPPLATVLPGFIDYCGQ--SLLVGHFVGLDVAFVNRACLRYYGARLS-NPCLDTMH 156

Query: 129 IA--------RRKHPSSRND----LNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKM 174
           +A        ++ H   R D    L +L  +YG+     H +   AL  ++L   +  KM
Sbjct: 157 LAQTHTEMQWQQYHDRFRMDISYNLAALGAKYGLPAFTHHNAYEDALQTAYLFIYLVKKM 216

Query: 175 MVGG 178
              G
Sbjct: 217 RSQG 220


>gi|270676235|ref|ZP_06222692.1| ribonuclease T [Haemophilus influenzae HK1212]
 gi|270316426|gb|EFA28313.1| ribonuclease T [Haemophilus influenzae HK1212]
          Length = 164

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 18/145 (12%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L +D   Y   ++     + P  G   
Sbjct: 2   KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 61

Query: 56  SPEALKLHGIT--DEFLKDKPSFSSIFSEFWDF------FNEQNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI   +      P   +I   F          + Q +  +AHNA FD  F+ 
Sbjct: 62  NPESLKFNGIDIHNPLRGTVPELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVM 121

Query: 108 AELQR--INKDPLDPSRIIDTLSIA 130
           A  +R  + ++P  P  + DT S+A
Sbjct: 122 AAAERTGVKRNPFHPFGMFDTASLA 146


>gi|255689883|ref|ZP_05413558.1| exonuclease [Bacteroides finegoldii DSM 17565]
 gi|260624488|gb|EEX47359.1| exonuclease [Bacteroides finegoldii DSM 17565]
          Length = 183

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 7/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ET     K   I E G   + D  K   T    + P G   S   +++HGI    
Sbjct: 7   IAIDFETA--TGKRASICEAGICVVRD-GKIVETRSWLVRPQGNSYSYWNMQIHGIRPND 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
             D P F  +++E   +  +     +AHNA FD+G I   L+    + L+ +    +L  
Sbjct: 64  TADSPEFPEVWTEISKYLKDIPVL-VAHNAAFDIGCIRHSLELYGMEKLEITYYC-SLRA 121

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           AR+ +    N L+ LC ++   I +   H A  D+ + + +++K
Sbjct: 122 ARKLYSFGCNSLDYLCDQF--RIPYGQHHRAGDDAEMCARLFLK 163


>gi|86143556|ref|ZP_01061941.1| nuclease subunit Cho of the excinuclease complex (UvrC-like
           protein) [Leeuwenhoekiella blandensis MED217]
 gi|85830003|gb|EAQ48464.1| nuclease subunit Cho of the excinuclease complex (UvrC-like
           protein) [Leeuwenhoekiella blandensis MED217]
          Length = 519

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 9/155 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTG   K ++I EI  + L +  + NR F   + P GR+      KL GI D  +
Sbjct: 52  IIDVETTGGGIKGNKITEICIIVLQEGKEINR-FASLVNP-GREIPLYIEKLTGINDRMV 109

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D P F  +  +       Q+  ++AHN  FD   + AE +    D  +  R+  T+ +A
Sbjct: 110 EDAPYFDELAPQIDAL--TQDCIFVAHNVGFDYNVVRAEFKEAGLD-FNRKRLC-TVRLA 165

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           ++  P   +  L +LC    I I H  +H A  D+
Sbjct: 166 KKLIPGLFSYSLGNLCT--SINIPHYDRHRATGDT 198


>gi|51596620|ref|YP_070811.1| ribonuclease T [Yersinia pseudotuberculosis IP 32953]
 gi|81825791|sp|Q66A36|RNT_YERPS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|51589902|emb|CAH21534.1| ribonuclease T [Yersinia pseudotuberculosis IP 32953]
          Length = 215

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++++D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF        ++    A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|227328518|ref|ZP_03832542.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 223

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++E+ AV L +D   + K + T    + P  G    P AL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLKPDETLHFHVEPFEGAILEPAALAFNG 79

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +   IF        +Q    A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAAERCSLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D++  + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|222109241|ref|YP_002551505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY]
 gi|221728685|gb|ACM31505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY]
          Length = 218

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 8/148 (5%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+  ++  R  E+ A+ L++  +    +Q  +   G +  P   +L GIT+  
Sbjct: 8   VIDFETTGMMPAQGARATEV-AIVLMEGGRVVDRYQSLMR-TGVRIPPFITQLTGITNAM 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P  +++  E   F    +A  +AHNA FD  F  AE+Q        P     T+ +
Sbjct: 66  VEAAPDAAAVMREAARFVG--DAPMVAHNAAFDRKFWQAEMQHAGLA--APHPFACTVLL 121

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRS 156
           +RR +P +  + L  L    G+  + R+
Sbjct: 122 SRRVYPDAPSHSLGRLTDHLGLPRAGRA 149


>gi|26987821|ref|NP_743246.1| ribonuclease T [Pseudomonas putida KT2440]
 gi|37999414|sp|Q88NW8|RNT_PSEPK RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|24982520|gb|AAN66710.1|AE016299_6 ribonuclease T [Pseudomonas putida KT2440]
          Length = 203

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 29/187 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-----------NGRKNSPE 58
           +V D+ET G +S  D ++EI AV +    K       FL P            G    P 
Sbjct: 11  VVVDVETGGFNSATDALLEIAAVTIGMDEKG------FLFPEHTYFHRVEPFEGANIEPA 64

Query: 59  ALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAEL 110
           AL+  GI  D  L+   S  S  ++ +    +       + A  + HN+ FD+GF+NA +
Sbjct: 65  ALEFTGIKLDHPLRMAVSEESAMTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAV 124

Query: 111 QR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            R  + ++P  P    DT ++A   +   +  L   C+   I    R  H A  D+   +
Sbjct: 125 ARNDLKRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTA 182

Query: 169 DVYIKMM 175
           +++  ++
Sbjct: 183 ELFCGIV 189


>gi|326794723|ref|YP_004312543.1| ribonuclease T [Marinomonas mediterranea MMB-1]
 gi|326545487|gb|ADZ90707.1| Ribonuclease T [Marinomonas mediterranea MMB-1]
          Length = 224

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 25/195 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + K D ++EI A  L +D +     + T +  + P  G      AL   G
Sbjct: 16  VVIDVETAGFNEKTDALLEIAASILRMDENGDLYIHETLEYIVQPFEGANLEKAALDFTG 75

Query: 65  ITDEFLKDK---PSFSSIFSEFWDFFNE------QNAEWIAHNAKFDVGFINAELQR--I 113
           I D F  D+   P   ++         E      + A  + HN+ FD GF+NA ++R  I
Sbjct: 76  I-DPFDPDRNDMPESEALTQMLSKVRKELKSVGCKRAILVGHNSSFDHGFLNAAIERCSI 134

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI- 172
            ++P  P    DT S+A   +   +  L   C+   I  S+   H A  D+   ++++  
Sbjct: 135 KRNPFHPFSSFDTASLAGLAY--GQTVLAKACEAANIPFSNSQAHSAKYDTEKTAELFCE 192

Query: 173 -----KMMVGGSQIN 182
                K M G SQ +
Sbjct: 193 IVNRWKQMGGWSQFS 207


>gi|321309652|ref|YP_004191981.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801496|emb|CBY92142.1| DNA polymerase III, alpha subunit, Gram-positive type (fragment)
           [Mycoplasma haemofelis str. Langford 1]
          Length = 216

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 84/201 (41%), Gaps = 21/201 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHGI 65
           V DIETTG   K   I EI   +  +  + ++          L P  R  +P       I
Sbjct: 22  VLDIETTGTSYKTSEITEISIHKYRNGKRVDKYHSFVKISRPLPPFIRIFTPH------I 75

Query: 66  TDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI 123
           TDE L ++      +  E  DF   + +  +AHN   FD+ F+ A   +    PL  + I
Sbjct: 76  TDELLAREGKDLDVVIKEVKDF--TKGSILVAHNGVTFDLLFLKAACIKYGLKPLS-NPI 132

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG----G 178
           IDTL ++R   P+ R + L  +C+R  +       H A  D  +L  V+    VG    G
Sbjct: 133 IDTLRLSRSTFPNERYHTLGDVCRRMQVNYDEDRAHSADYDVDVLWQVFWNFAVGLKKIG 192

Query: 179 SQINFGFKTNEDRFFKEEKKT 199
             +  G +   +  F   KKT
Sbjct: 193 VNLEDGLQEANEAIFNMFKKT 213


>gi|206889195|ref|YP_002247891.1| DNA polymerase III PolC-type, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741133|gb|ACI20190.1| DNA polymerase III PolC-type, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 225

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 15/182 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D E TGLD KND II IGA+ + + S      F   L P   K   +A+ +H +T  
Sbjct: 21  VVIDTELTGLDEKNDSIISIGAITMRERSILIGDIFYRILNPQC-KPKDKAVLIHKLTST 79

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-----INKDPLDPSRI 123
            L+  P    I  EF DF   +N   + H  + D+ F+  E  +        + +D   I
Sbjct: 80  ELEQCPDIKLILKEFIDFI--KNRPIVGHFIEIDIKFLRKETSKWLNTGFTPEAIDTYII 137

Query: 124 IDTL---SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            + L    I  +K   +++ L  + + + I +     H AL D+ + + ++ + ++   +
Sbjct: 138 FNWLIEREIISKKFKGAKS-LPEIAEAFDIKVDML--HDALYDAFITAQIFQREIIMVQK 194

Query: 181 IN 182
           IN
Sbjct: 195 IN 196


>gi|302550179|ref|ZP_07302521.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
 gi|302467797|gb|EFL30890.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
          Length = 242

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 13/153 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+D + DRI+   AV + D          +L   G     EA  +HG+T+E L+
Sbjct: 13  FDTETTGVDVETDRIVS-AAVVVQDAPGVRPRVSRWLVNPGVPVPAEATAVHGLTEEHLQ 71

Query: 72  DKPSF-SSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLD------PS 121
               + + +  E  +   EQ       +  NA FD+  ++ EL+R     L       P 
Sbjct: 72  RNGRWPAPVVYEIAETLAEQAHAGRPVVVMNAPFDLTLLDRELRRHRASALGRWFESAPL 131

Query: 122 RIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
            ++D   + +   ++   R  L  LC  YG+ +
Sbjct: 132 WVLDPRVLDKHLDRYRKGRRTLTDLCAHYGVAL 164


>gi|153949552|ref|YP_001400734.1| ribonuclease T [Yersinia pseudotuberculosis IP 31758]
 gi|166991091|sp|A7FHK6|RNT_YERP3 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|152961047|gb|ABS48508.1| ribonuclease T [Yersinia pseudotuberculosis IP 31758]
          Length = 215

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++++D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF        ++    A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|228476066|ref|ZP_04060774.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           hominis SK119]
 gi|228269889|gb|EEK11369.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           hominis SK119]
          Length = 905

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   ++D II+IG   + D +K + T+   +     +  P    L  I +  L
Sbjct: 8   VVDLETTGNQLEHDEIIQIGITFVRD-NKISGTYHS-MIRTDLEIPPFIQALTSIEETML 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  I  + ++    ++  ++AHN  FD+ FI    ++ N     P +++DTL + 
Sbjct: 66  EQAPYFHEIADDIYE--QLKDCIFVAHNVDFDLNFIKKAFEKSNIH-FKPKKVLDTLELF 122

Query: 131 RRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHLL 167
           +   P+ ++  L+ L   + I  T +HR+   A   ++L+
Sbjct: 123 KIAFPTEKSYQLSELANAHNIPLTNAHRADEDATTTAYLM 162


>gi|86149218|ref|ZP_01067450.1| DNA polymerase III PolC-type [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88596976|ref|ZP_01100212.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562107|ref|YP_002343886.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85840576|gb|EAQ57833.1| DNA polymerase III PolC-type [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190665|gb|EAQ94638.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359813|emb|CAL34600.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|315928220|gb|EFV07537.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315930011|gb|EFV09154.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni 305]
          Length = 253

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 9/145 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           + DIE+TG  SK + I+EIGAV++ +  +  R FQ F+     K  P+ + +L GIT E 
Sbjct: 74  IVDIESTGGVSKGE-ILEIGAVKIQNSKEIGR-FQSFV---KVKEIPKNITELTGITYEM 128

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++  S + + S+F  F   +++ ++AHN +FD  FI+  L       L   RI  T+  
Sbjct: 129 VENASSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 185

Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154
           A+    S +  L  L +  G+   H
Sbjct: 186 AQCCIESPKYKLEVLKEFLGVENMH 210


>gi|254516595|ref|ZP_05128654.1| ribonuclease T [gamma proteobacterium NOR5-3]
 gi|219675018|gb|EED31385.1| ribonuclease T [gamma proteobacterium NOR5-3]
          Length = 209

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 25/201 (12%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NG 52
           M  K++ R    ++ D+ET G  S  D I+E+ A  + +D   +   + T    + P  G
Sbjct: 1   MAMKSRFRGFLPVIIDMETGGFSSSTDAILELAATIIRMDDSGHVAVHETHSFNVAPFEG 60

Query: 53  RKNSPEALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVG 104
                 AL   GI       E   +K + + +F        +Q    A  + HNA FD G
Sbjct: 61  ANIEQSALDFTGIDPWHPFREAHSEKDALAELFQVVRREIRDQECNRAILVGHNAHFDAG 120

Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+NA ++R  I ++P  P    DT +++   +   +  L   C   GI   +   H A  
Sbjct: 121 FLNAAVERCEIKRNPFHPFSHFDTATLSGLAY--GQTVLAKSCLEAGIPFDNEQAHSAAY 178

Query: 163 DSHLLSDVYIKM-----MVGG 178
           D+   ++++  +     M+GG
Sbjct: 179 DAERTAELFCSIVNRWQMLGG 199


>gi|82543982|ref|YP_407929.1| ribonuclease T [Shigella boydii Sb227]
 gi|194434706|ref|ZP_03066959.1| ribonuclease T [Shigella dysenteriae 1012]
 gi|123559690|sp|Q321A7|RNT_SHIBS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|81245393|gb|ABB66101.1| RNase T [Shigella boydii Sb227]
 gi|194417044|gb|EDX33160.1| ribonuclease T [Shigella dysenteriae 1012]
 gi|320186326|gb|EFW61062.1| Ribonuclease T [Shigella flexneri CDC 796-83]
 gi|332093985|gb|EGI99038.1| ribonuclease T [Shigella dysenteriae 155-74]
 gi|332096070|gb|EGJ01075.1| ribonuclease T [Shigella boydii 3594-74]
          Length = 215

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112
           I D    D+ + S  +    + F              A  +AHNA FD  F+ A  +R  
Sbjct: 80  I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMIAAAERAS 137

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   + ++ 
Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195

Query: 173 KMM 175
           +++
Sbjct: 196 EIV 198


>gi|22125847|ref|NP_669270.1| ribonuclease T [Yersinia pestis KIM 10]
 gi|45441960|ref|NP_993499.1| ribonuclease T [Yersinia pestis biovar Microtus str. 91001]
 gi|149365707|ref|ZP_01887742.1| ribonuclease T [Yersinia pestis CA88-4125]
 gi|218929473|ref|YP_002347348.1| ribonuclease T [Yersinia pestis CO92]
 gi|229837906|ref|ZP_04458065.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229895067|ref|ZP_04510244.1| ribonuclease T (RNase T) [Yersinia pestis Pestoides A]
 gi|229898469|ref|ZP_04513615.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902309|ref|ZP_04517429.1| ribonuclease T (RNase T) [Yersinia pestis Nepal516]
 gi|24638167|sp|Q8ZE08|RNT_YERPE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|21958778|gb|AAM85521.1|AE013798_8 RNase T, degrades tRNA [Yersinia pestis KIM 10]
 gi|45436823|gb|AAS62376.1| ribonuclease T [Yersinia pestis biovar Microtus str. 91001]
 gi|115348084|emb|CAL21010.1| ribonuclease T [Yersinia pestis CO92]
 gi|149292120|gb|EDM42194.1| ribonuclease T [Yersinia pestis CA88-4125]
 gi|229680644|gb|EEO76740.1| ribonuclease T (RNase T) [Yersinia pestis Nepal516]
 gi|229688513|gb|EEO80583.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694272|gb|EEO84319.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701955|gb|EEO89977.1| ribonuclease T (RNase T) [Yersinia pestis Pestoides A]
 gi|320015036|gb|ADV98607.1| ribonuclease T [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 215

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++++D ++EI AV L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF        ++    A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|300934175|ref|ZP_07149431.1| putative exonuclease [Corynebacterium resistens DSM 45100]
          Length = 214

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 49/112 (43%), Gaps = 11/112 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+ D+ETTGL+ KN RIIE+  + + D    N   Q +L       S     L GIT+  
Sbjct: 18  IIIDVETTGLEPKNHRIIEVATLTVRDAQPINS--QRWLLNPEDHISEFITDLTGITNAH 75

Query: 70  LKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQR 112
           +   P+F S+  E     N          Q    + HN  FD  F+  EL R
Sbjct: 76  VAKCPTFRSVAEEIMSVLNPAGEHGSDTGQAPILVGHNVAFDYSFLQHELLR 127


>gi|288934625|ref|YP_003438684.1| exonuclease RNase T and DNA polymerase III [Klebsiella variicola
           At-22]
 gi|290508826|ref|ZP_06548197.1| exodeoxyribonuclease X [Klebsiella sp. 1_1_55]
 gi|288889334|gb|ADC57652.1| Exonuclease RNase T and DNA polymerase III [Klebsiella variicola
           At-22]
 gi|289778220|gb|EFD86217.1| exodeoxyribonuclease X [Klebsiella sp. 1_1_55]
          Length = 219

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 29/168 (17%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++D   TN      L    R  +P+A+ +H IT+E +
Sbjct: 4   VIDTETCGLQGG---IVEIASVDIVDGRITNPMSH--LVRPDRPITPQAMAIHRITEEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    I   +        + W +AHNA FD        +R+   P      I T+ +
Sbjct: 59  ADKPWIEEIIPHY------LGSPWYVAHNASFD--------RRVL--PEMSGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITIS-------HRSKHGALLDSHLLSDV 170
           ARR  P  +     L K   + ++       HR+ +   + + LL D+
Sbjct: 103 ARRLWPGIKYSNMGLYKSRKLNVATPPGLHHHRALYDCYITAALLLDI 150


>gi|332686697|ref|YP_004456471.1| DinG family ATP-dependent helicase YoaA [Melissococcus plutonius
           ATCC 35311]
 gi|332370706|dbj|BAK21662.1| DinG family ATP-dependent helicase YoaA [Melissococcus plutonius
           ATCC 35311]
          Length = 924

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 5/128 (3%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG+D   DRII+ G V L++  +        + PN R    +   L GI++  +
Sbjct: 9   VVDLETTGVDPTVDRIIQFGCV-LIENGEIVSHIGTDVNPN-RIIPKQIQHLTGISNARV 66

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  I    ++     +  ++AHN  FD  F++ EL R    PL     IDT+ +A
Sbjct: 67  QKAPYFEDIAIMIFNLLT--DTIFVAHNVHFDYRFLSHELVRCGLPPLTIDA-IDTVELA 123

Query: 131 RRKHPSSR 138
           +   P+ R
Sbjct: 124 QIFLPTER 131


>gi|229816213|ref|ZP_04446523.1| hypothetical protein COLINT_03263 [Collinsella intestinalis DSM
           13280]
 gi|229808221|gb|EEP44013.1| hypothetical protein COLINT_03263 [Collinsella intestinalis DSM
           13280]
          Length = 977

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 62/217 (28%), Positives = 96/217 (44%), Gaps = 27/217 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           IV D ETTGL  ++  +IEI A  L      +R F  F+ P+G    PE + KL  IT+ 
Sbjct: 48  IVLDTETTGLSHRDSELIEIAAARLRGREIVDR-FDTFVKPSGL--IPEEITKLTSITNV 104

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTL 127
            +   PS     +   +F        +AHNA FD GFI            D S I ID+L
Sbjct: 105 DVAHAPSAVDAVASLAEFVG--GCPVVAHNAAFDRGFIEQV-----PGGADVSDIWIDSL 157

Query: 128 SIARRKHPS-SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +++R   P  + + L  + + +G  ++SHR+      D   L  V+  ++ G + +  G 
Sbjct: 158 ALSRIALPRLASHKLAVMAELFGCESVSHRAN----ADVEALCGVWRILLCGLADLPAGL 213

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
                R   +    VP        +P+F+ +  EE D
Sbjct: 214 M----RRLADMHPDVP-----WSYRPIFSFLAAEEPD 241


>gi|148546369|ref|YP_001266471.1| ribonuclease T [Pseudomonas putida F1]
 gi|166200017|sp|A5VZH7|RNT_PSEP1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|148510427|gb|ABQ77287.1| RNAse T [Pseudomonas putida F1]
 gi|313497451|gb|ADR58817.1| Ribonuclease T [Pseudomonas putida BIRD-1]
          Length = 224

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 29/187 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-----------NGRKNSPE 58
           +V D+ET G +S  D ++EI AV +    K       FL P            G    P 
Sbjct: 32  VVVDVETGGFNSATDALLEIAAVTIGMDEKG------FLFPEHTYFHRVEPFEGANIEPA 85

Query: 59  ALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAEL 110
           AL+  GI  D  L+   S  S  ++ +    +       + A  + HN+ FD+GF+NA +
Sbjct: 86  ALEFTGIKLDHPLRMAVSEESAMTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAV 145

Query: 111 QR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            R  + ++P  P    DT ++A   +   +  L   C+   I    R  H A  D+   +
Sbjct: 146 ARNDLKRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTA 203

Query: 169 DVYIKMM 175
           +++  ++
Sbjct: 204 ELFCGIV 210


>gi|109898818|ref|YP_662073.1| DNA polymerase III subunit epsilon [Pseudoalteromonas atlantica
           T6c]
 gi|109701099|gb|ABG41019.1| Exonuclease, RNase T and DNA polymerase III [Pseudoalteromonas
           atlantica T6c]
          Length = 251

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 5/124 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+ K D I+ IG V +       +  Q ++     +   +++ +HGIT   
Sbjct: 61  VALDFETTGLNPKTDSIVSIGLVAMTVKRIRCQEAQHWIIKPDTELKTKSVVIHGITHSD 120

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128
           + D PSF+ +  E       Q    +AH+   +V F+N+ L+  I ++ + P   IDT++
Sbjct: 121 VADAPSFNRVLDELLQHL--QGKVVVAHHKDIEVRFLNSALKHYIGEEIVFPC--IDTMA 176

Query: 129 IARR 132
           +  R
Sbjct: 177 LEAR 180


>gi|291456364|ref|ZP_06595754.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Bifidobacterium breve DSM 20213]
 gi|291381641|gb|EFE89159.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Bifidobacterium breve DSM 20213]
          Length = 235

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 15/163 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITD 67
           +  D+ETTG       I EIGAV +      ++  Q+   LCP  R+ +     L GITD
Sbjct: 35  VALDLETTGFYPNRCAITEIGAVRVRGGRVVDQFQQLINPLCPIPRQIT----ALTGITD 90

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEW-----IAHNAKFDVGFINAELQRINKDPLDPSR 122
             + D      +  +F  +  + NA       + HN  FD+ F++   + I       + 
Sbjct: 91  AMVADHDPIDGVLPQFISWLADSNAAAETEPIVGHNVSFDLRFLDYNTRHIAGCGFACAD 150

Query: 123 IIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDS 164
             DT+ I+R   P  S + L  L  R+G  I+   +H AL D+
Sbjct: 151 -YDTMQISRALFPKQSHHRLADLIVRFG--IADNEEHRALSDA 190


>gi|332312340|gb|EGJ25435.1| ATP-dependent helicase [Listeria monocytogenes str. Scott A]
          Length = 931

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 11/172 (6%)

Query: 1   MIRKNKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M +  + R IV D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  
Sbjct: 1   MEQMKQKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAF 57

Query: 60  LK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           ++ L GI+ + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L
Sbjct: 58  IQELTGISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-L 114

Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              + +DT+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 115 GKMKKLDTVELARIMYPGIDSYKLQDLSDEF--NLGHDKPHRADSDAEVTAD 164


>gi|314936410|ref|ZP_07843757.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655029|gb|EFS18774.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 905

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG   ++D II+IG   + D +K + T+   +     +  P    L  I +  L
Sbjct: 8   VVDLETTGNQLEHDEIIQIGITFVRD-NKISGTYHS-MIRTDLEIPPFIQALTSIEETML 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  I  + ++    ++  ++AHN  FD+ FI    ++ N     P +++DTL + 
Sbjct: 66  EQAPYFHEIADDIYE--QLKDCIFVAHNVDFDLNFIKKAFEKSNIH-FKPKKVLDTLELF 122

Query: 131 RRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHLL 167
           +   P+ ++  L+ L   + I  T +HR+   A   ++L+
Sbjct: 123 KIAFPTEKSYQLSELANAHNIPLTNAHRADEDATTTAYLM 162


>gi|290343478|ref|YP_003494845.1| hypothetical protein OTV1_005 [Ostreococcus tauri virus 1]
 gi|260160893|emb|CAY39593.1| hypothetical protein OTV1_005 [Ostreococcus tauri virus 1]
          Length = 446

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 80/184 (43%), Gaps = 22/184 (11%)

Query: 10  IVFDIETTGLD-----------SKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           + +D ET G+            SK D  RI+ + AV+     +   TF   + P G +  
Sbjct: 9   VAWDTETCGIPKTRVRPTRENLSKFDDARIVSLSAVKFSSRGREIDTFNRIIKPIGYQVG 68

Query: 57  PEALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
             A  +HGIT E+ ++    F + F EF +F  ++     AHN+ FD G I  EL RI  
Sbjct: 69  --ATHIHGITHEYAEEHGVPFKTAFQEFIEFIGDRCNILCAHNSLFDEGIIGHELLRIGL 126

Query: 114 --NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             NKD LD      T  + +++  SS    N     +G      + H +L D+     VY
Sbjct: 127 DPNKDFLDKYIFNCTHEMYKKRFLSSIKLTNLYKDIFGKEFD--NAHNSLADARACGQVY 184

Query: 172 IKMM 175
             +M
Sbjct: 185 PYLM 188


>gi|163751907|ref|ZP_02159120.1| exonuclease [Shewanella benthica KT99]
 gi|161328190|gb|EDP99355.1| exonuclease [Shewanella benthica KT99]
          Length = 227

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 25/168 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE------LLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           I  D+E TGL+  +D+I+ IG +       LLD ++     Q  +  +G      A  +H
Sbjct: 43  IALDLEMTGLNPNHDQILSIGLIPIENNLLLLDKAE-----QKLIKVDGGVGQSAA--IH 95

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI D+ L+D        S  W          +AH+A  D+ F+   + +   +P+     
Sbjct: 96  GILDKHLQDAIDIEEAIS--WFLEKTLGKVLVAHHAPLDINFLQNAMSKTVGEPVKLCA- 152

Query: 124 IDTLSIAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDS 164
           IDTL++ R    RKH   +     L +   RYG+ +   + H AL+D+
Sbjct: 153 IDTLAVERRRLLRKHDVLKEGSLRLGACRTRYGLPVY--AAHNALVDA 198


>gi|309805626|ref|ZP_07699668.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165064|gb|EFO67305.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
          Length = 225

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 16/180 (8%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   K +DRII+ G   + D  K  +T+   + P   K  P A++ L GI+++
Sbjct: 13  VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+ 
Sbjct: 70  EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126

Query: 129 IARRKHPSS-----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-MVGGSQIN 182
           +A+   P+      ++  N+L  ++     HR+   AL+ + +L  +  K+ M+  + +N
Sbjct: 127 LAQIAFPTIPSYKLQDITNTLHIKHA--NPHRADSDALVTAKMLLKIIEKIEMLPTATLN 184


>gi|256421379|ref|YP_003122032.1| exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis
           DSM 2588]
 gi|256036287|gb|ACU59831.1| Exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis
           DSM 2588]
          Length = 257

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 14/163 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG +   DRIIEI  +++  D S   +  ++     G    P +  +HGI+DE 
Sbjct: 12  VIDLETTGTNVATDRIIEIAIIKVFPDKSVQTKVKRIH---PGMPIPPASTAIHGISDED 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127
           +KD P+F    +E   +   +N +   +N+ +FD+  +  E  R   D      R ID  
Sbjct: 69  IKDCPTFKQCANELRQYM--ENCDLAGYNSNRFDIPLLVEEFLRAGLDFDTKDRRFIDVQ 126

Query: 128 SIARRKHPSSRNDLNSLCKRYG---ITISHRSKHGALLDSHLL 167
            I    H   +  L++  K Y    +T +H ++  AL    +L
Sbjct: 127 KIF---HLMEKRTLSAAYKFYCDKDLTNAHSAEADALATYEIL 166


>gi|157370439|ref|YP_001478428.1| ribonuclease T [Serratia proteamaculans 568]
 gi|157322203|gb|ABV41300.1| ribonuclease T [Serratia proteamaculans 568]
          Length = 226

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIET G ++K D ++EI AV L +D   + + + T    + P  G    PEAL  +G
Sbjct: 31  VVIDIETAGFNAKTDALLEIAAVTLKMDEDGWLQQDETLHFHVEPFEGANLQPEALAFNG 90

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        ++    A  +AHNA FD  F+ A  +R  + 
Sbjct: 91  IDPSNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFLMAAAERASLK 150

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C    I       H AL D+   + ++ ++
Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACIAADIPFDSAQAHSALYDTEQTAQLFCEL 208

Query: 175 M 175
           +
Sbjct: 209 V 209


>gi|254233206|ref|ZP_04926532.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis C]
 gi|124602999|gb|EAY61274.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis C]
          Length = 329

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
             +P F+ I  E  D    +    +AHN  FD  F+ AE +    + P+D   ++ T+ +
Sbjct: 75  DGQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR      N  L +L   +G  +  +  H A  D  +L+ +    +
Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDVRVLTGILAAAL 175


>gi|291513942|emb|CBK63152.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Alistipes shahii WAL 8301]
          Length = 255

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 13/112 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           I FD+ETTG+D+  DRI+EI  V+++    + +KT R     L P G     EA  +HGI
Sbjct: 10  IFFDLETTGVDTARDRIVEISMVKVMPDGEEITKTRR-----LNP-GMHIPEEASAIHGI 63

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           TD+ ++D P+F+ +      F   +  ++   N+ +FD+  +  E  R   D
Sbjct: 64  TDDDVRDCPTFAQVARSLEQFI--RGCDFGGFNSNRFDLPVLVEEFLRAGVD 113


>gi|323497526|ref|ZP_08102544.1| putative exonuclease [Vibrio sinaloensis DSM 21326]
 gi|323317609|gb|EGA70602.1| putative exonuclease [Vibrio sinaloensis DSM 21326]
          Length = 238

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 12/162 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGLD+++D I+ +G VE+ +      T Q F   N  +  PE   ++ IT + 
Sbjct: 52  LVLDLETTGLDAESDLILSMGWVEISNGVIDLSTAQHFYLSNESQIKPETAVINHITPQM 111

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSRIIDT 126
           L+D  S     +  ++    Q    +AH+   +  FI   L    +IN  PL     +DT
Sbjct: 112 LEDGISIHDAMNALFEV--AQGKVLVAHSCSVENSFIQRYLSYRFQINAVPL---MWLDT 166

Query: 127 LSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDS 164
           L I ++   +  N    D++    R    +    +H AL+D+
Sbjct: 167 LCIEKKLARAINNHQDLDVSLGATRERYQLPEYIEHNALMDA 208


>gi|254443961|ref|ZP_05057437.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Verrucomicrobiae bacterium DG1235]
 gi|198258269|gb|EDY82577.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Verrucomicrobiae bacterium DG1235]
          Length = 220

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 11/171 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEAL-KLHGITD 67
           + FD+ETTGL  K + I +I  V L         +F  ++ P   K  PE + KL  + D
Sbjct: 8   VAFDLETTGLRYKQEEITQIAGVRLGGVIMNVEDSFCTYVNPG--KPIPENIQKLTRVRD 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126
           E +KD P        F D+    +A    H+  +FD  FI  +  R         R IDT
Sbjct: 66  EDVKDAPKPLEALQAFSDWVG--DATLFGHDIYRFDFNFIR-KYARQEGVETRTVRFIDT 122

Query: 127 LSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + I     P     RN L+ + +R    +S   +H A  D+ LL+ +Y ++
Sbjct: 123 MDIFEVMWPDFSRLRNSLDDIAERLSAGLSSMRRHDAQSDAILLAHIYQRI 173


>gi|306822551|ref|ZP_07455929.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309801474|ref|ZP_07695601.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554096|gb|EFM42005.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308221989|gb|EFO78274.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 328

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL+ ++ DR IEIG V +          +  +  +       A  +H I+   
Sbjct: 19  VVDFETTGLNPARGDRAIEIGLVHVAPDGTLEDEHETLIRVH---RDIGAQWIHHISAVE 75

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128
           L   P F  I  E  D    +   ++AHN  FD  F+ +E +R+  D P++   ++ T+ 
Sbjct: 76  LIHAPEFEGIARELRDLLAGRV--FVAHNVAFDSKFLLSEYRRLGADIPVNSHTMLCTMK 133

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R         L   C+ +G  I +   H AL D+H  + +  ++M
Sbjct: 134 LSRSL--IGVGSLADCCREFG--IDNEDAHSALSDAHATALLLGRLM 176


>gi|317051245|ref|YP_004112361.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
 gi|316946329|gb|ADU65805.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
          Length = 206

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 9/170 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD ETTGLD  +D II IGAV +  +   T+   ++F  P  ++   E++K+H +   
Sbjct: 32  VSFDCETTGLDVHHDEIISIGAVRIRGNQILTSEKLELFFNPQ-QEMRVESIKIHHLLTC 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D         +F +F    N   + +  +FDV  +N  L+ +    L P+R I+   
Sbjct: 91  DLVDGVPLEEGIRQFLNFIG--NRPLVGYYLEFDVAMVNRVLKPMLGITL-PNRQIEVSG 147

Query: 129 IARRKH----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +   K     P    DL      + + +   +KH AL D+ + + +Y+K+
Sbjct: 148 LYYDKKIAAIPQGNVDLRFDSIMHDLDLPPFAKHDALGDAIMTAMMYVKL 197


>gi|261879422|ref|ZP_06005849.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
           bergensis DSM 17361]
 gi|270333990|gb|EFA44776.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
           bergensis DSM 17361]
          Length = 287

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 6/128 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+FD+ETTGLD   DRII+I  +++       R   +F+ P  +   P   +L  ITD+ 
Sbjct: 10  IIFDLETTGLDLATDRIIQISYIKVDPQGNEERK-SLFVNPE-KPIPPFVQELTHITDDM 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127
           +KD P+F  I     + F     ++   N+ +FDV  +  E  R   D      R+ID  
Sbjct: 68  VKDAPTFKQIAKSLQETF--AGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFQRCRLIDAQ 125

Query: 128 SIARRKHP 135
           +I  +  P
Sbjct: 126 NIFHKMEP 133


>gi|270293052|ref|ZP_06199263.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus sp. M143]
 gi|270279031|gb|EFA24877.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus sp. M143]
          Length = 157

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 10/159 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + +    N+ +   + P+   +S    +L G+TD
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIENGEIINQ-YATDVNPHEPLDS-HIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L   P FS +  + ++    ++  ++AHN +FD   + AE        L   R +DT+
Sbjct: 64  RRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLL-AEFLFFEGYELRTPR-VDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH 165
            +A+  +P   + +L  LC+  GI + H   H AL D+ 
Sbjct: 120 ELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQ 156


>gi|226227968|ref|YP_002762074.1| exonuclease [Gemmatimonas aurantiaca T-27]
 gi|226091159|dbj|BAH39604.1| exonuclease [Gemmatimonas aurantiaca T-27]
          Length = 323

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 12/102 (11%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-----FLCPNGRKNSPEALK 61
           MR +V D+ETTGLD+  D IIE GAV   D+    R + V     +    GR    EA  
Sbjct: 47  MRGLVVDVETTGLDTARDVIIEFGAVP-FDFDGEGRVYTVHPPLSYFEDPGRPIPAEASA 105

Query: 62  LHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           + GITD+ ++ K    +++ +       +Q    IAHNA FD
Sbjct: 106 ITGITDDDVRGKRIDDAAVLAAL-----DQAVLVIAHNAGFD 142


>gi|152970543|ref|YP_001335652.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|330015632|ref|ZP_08308213.1| ribonuclease T [Klebsiella sp. MS 92-3]
 gi|166228567|sp|A6TA01|RNT_KLEP7 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|150955392|gb|ABR77422.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|328531231|gb|EGF58076.1| ribonuclease T [Klebsiella sp. MS 92-3]
          Length = 215

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGF--INAELQRIN 114
           I         + +  +  +IF        E +   A  +AHNA FD  F    AE   + 
Sbjct: 80  INPHDPQRGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACIAAGMPFDGAQAHSALYDTEQTAQLFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|317013348|gb|ADU83956.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           Lithuania75]
          Length = 287

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 91/214 (42%), Gaps = 17/214 (7%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GI  E   
Sbjct: 77  DLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 133 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQINFGFKT 187
           R   S R  L+ L     +GI +SHR+   AL    L     + +   +  +     F  
Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADALASYKLFEICLLNLPSYIKTTMDLIDFSK 249

Query: 188 NEDRFFKEEKK-----TVPNISLLKRDKPLFTRI 216
             +   K   K     T P  SL +R K LF  I
Sbjct: 250 CANTLIKRPPKARHQETPPPFSLFERTKGLFNII 283


>gi|291548714|emb|CBL24976.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Ruminococcus torques L2-14]
          Length = 168

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 17/106 (16%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAV----ELL--DYSKTNRTFQVFLCPNGRKNSPEALKL 62
           K+ FDIE+TGLD   D I+++  +    E+L  DY +  R           K   EA K+
Sbjct: 2   KVFFDIESTGLDPVRDEILQLSIINENEEVLFSDYIRLVR----------HKTWNEAEKI 51

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           + I+ E +KDK +F S   E    F+ Q  E IA+NA FD+ F+ A
Sbjct: 52  NHISPEMVKDKQTFESRKQEIQKIFD-QATELIAYNANFDISFLKA 96


>gi|15843331|ref|NP_338368.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           CDC1551]
 gi|148824916|ref|YP_001289670.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis F11]
 gi|218755494|ref|ZP_03534290.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis GM
           1503]
 gi|254366256|ref|ZP_04982300.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254552821|ref|ZP_05143268.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289763891|ref|ZP_06523269.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis GM 1503]
 gi|306778600|ref|ZP_07416937.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu002]
 gi|306786623|ref|ZP_07424945.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu003]
 gi|306790989|ref|ZP_07429311.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu004]
 gi|306791307|ref|ZP_07429609.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu005]
 gi|306795373|ref|ZP_07433675.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu006]
 gi|306801344|ref|ZP_07438012.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu008]
 gi|306805555|ref|ZP_07442223.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu007]
 gi|306969951|ref|ZP_07482612.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu009]
 gi|13883693|gb|AAK48182.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|134151768|gb|EBA43813.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148723443|gb|ABR08068.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           F11]
 gi|289711397|gb|EFD75413.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis GM 1503]
 gi|308328330|gb|EFP17181.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu002]
 gi|308328734|gb|EFP17585.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu003]
 gi|308332576|gb|EFP21427.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu004]
 gi|308340068|gb|EFP28919.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu005]
 gi|308344057|gb|EFP32908.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu006]
 gi|308347855|gb|EFP36706.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu007]
 gi|308351843|gb|EFP40694.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu008]
 gi|308352508|gb|EFP41359.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu009]
 gi|323717575|gb|EGB26777.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           CDC1551A]
          Length = 329

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
             +P F+ I  E  D    +    +AHN  FD  F+ AE +    + P+D   ++ T+ +
Sbjct: 75  DGQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR      N  L +L   +G  +  +  H A  D  +L+ +    +
Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDVRVLTGILAAAL 175


>gi|313637226|gb|EFS02740.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           seeligeri FSL S4-171]
          Length = 921

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 11/162 (6%)

Query: 11  VFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           + D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  ++ L GI+ +
Sbjct: 1   MVDLETTGNQASREDRIIQFAAC-FVESGKRLETYATFLNPE--KPIPAFIQELTGISPK 57

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P F  +          ++  ++AHN  FD  F+  E+ R     L   + +DT+ 
Sbjct: 58  DVKDAPLFEDVAPIIAGLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLDTVE 114

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           +AR  +P      L  L   +G  + H   H A  D+ + +D
Sbjct: 115 LARIMYPGIDSYKLQDLSDEFG--LGHDKPHQADSDAEVTAD 154


>gi|293395725|ref|ZP_06640007.1| exodeoxyribonuclease X [Serratia odorifera DSM 4582]
 gi|291421662|gb|EFE94909.1| exodeoxyribonuclease X [Serratia odorifera DSM 4582]
          Length = 222

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 23/163 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GLD     I+E+ +++++D    N      +CP+ R    EA+ +H IT+  +
Sbjct: 5   VIDTETCGLDGG---IVEVASIDIIDGQLAN-PMSDLVCPD-RPIGIEAMAIHHITEAMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP  +     +       +  ++AHNA FD G     L  +N       R I T+ +A
Sbjct: 60  EGKPRIAVAIGRYMG-----SEYYVAHNAAFDRGV----LPEMN------GRWICTVKLA 104

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH-LLSDVYI 172
           R  +P  +     L  RY + +  +      L  H  L D Y+
Sbjct: 105 RALYPGIKYGNQYL--RYALNLEVQLPQDTTLYPHRALYDCYV 145


>gi|149195052|ref|ZP_01872144.1| Exonuclease [Caminibacter mediatlanticus TB-2]
 gi|149134765|gb|EDM23249.1| Exonuclease [Caminibacter mediatlanticus TB-2]
          Length = 293

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 36/188 (19%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-----EALK 61
           M+ I+ D ETTG + + DRI +      L Y   N   ++    N     P     EA+ 
Sbjct: 1   MKIIILDTETTG-NKQEDRICQ------LSYLVLNEDLEIEEIHNELVKPPIPISYEAMA 53

Query: 62  LHGITDEFLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +H IT+E ++DKP   F++ +    +  + +N   + HN++FD       L+ + K+  +
Sbjct: 54  VHHITNEMVEDKPQIKFTNSYKRLKELNSPENI-IVIHNSEFD-------LEMLRKEGFN 105

Query: 120 P-SRIIDTLSIARRKHPSSRNDLN-------------SLCKRYGITISHRSKHGALLDSH 165
           P  ++IDT  + +   P  +  L               +CK+Y ITI+     G ++  +
Sbjct: 106 PFFKLIDTFRVLKHILPDGKFGLQYNRYALGLYKKEKDICKKYNITINAHDALGDVVVLY 165

Query: 166 LLSDVYIK 173
           LL +  +K
Sbjct: 166 LLFEYILK 173


>gi|322388190|ref|ZP_08061794.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus infantis ATCC 700779]
 gi|321140862|gb|EFX36363.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus infantis ATCC 700779]
          Length = 816

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 10/168 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D  +    +   + P+ R +S    +L G+TD
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIED-GEIVEQYATDVNPHERLDS-HIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + ++    ++  ++AHN +FD   + AE        L   R IDT+
Sbjct: 64  KRLAKAPEFSQVAEKIFELV--KDGIFVAHNVQFDANLL-AEFLFFEGYELRTPR-IDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +A+  +P   + +L  LC+  GI +     H AL D+   +++++ M
Sbjct: 120 ELAQIFYPQLEKYNLGILCQELGIPLEQ--AHSALSDAQATAELFLCM 165


>gi|307565674|ref|ZP_07628146.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
 gi|307345619|gb|EFN90984.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
          Length = 892

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 17/141 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-------GRKNSPEALKL 62
           +VFD ETTGLD  ND IIEI A+++ +  +  +T  +++  +       G K++P    L
Sbjct: 511 VVFDTETTGLDVFNDDIIEISAIKIRNGKQIGKTLDLYIYTDKTILPKLGIKDNP----L 566

Query: 63  HGITDEFLKDKP--SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           + I +E L      +     +EF  F    N+  +AHN  +D   ++  L+R   D L+ 
Sbjct: 567 YEIYNEKLNSGELINIKEALNEFLKF--ADNSILMAHNINYDYHILDNCLRRYTGDNLNN 624

Query: 121 S--RIIDTLSIARRKHPSSRN 139
              +  D+L I R   PS R+
Sbjct: 625 YNFKYFDSLKIIRLLEPSLRS 645


>gi|307297299|ref|ZP_07577105.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916559|gb|EFN46941.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 185

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 10/172 (5%)

Query: 7   MRKI--VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
           M+KI  V D ETTG    + DRI+EI A+ +       N +FQ  + P     + +   +
Sbjct: 1   MKKIYLVIDTETTGSSPLEGDRILEIAAIPVYGNKILHNLSFQSLVNPLVMIPA-QITGI 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+ +E + D+P+ + +F  F ++     A  + HN   D+ F +   +     PL  + 
Sbjct: 60  HGLKNEDVLDEPTMAEVFPRFRNYVG--GATIVGHNIVNDMTFFDIASKETGILPL-ANN 116

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            IDT+ IA          L S+ KR  + I     H A+ D+ + + V++ +
Sbjct: 117 YIDTIDIAHEVFSEGPYGLKSIAKR--LRIRDVPTHRAMDDARVTAKVFLAL 166


>gi|294636395|ref|ZP_06714781.1| ribonuclease T [Edwardsiella tarda ATCC 23685]
 gi|291090340|gb|EFE22901.1| ribonuclease T [Edwardsiella tarda ATCC 23685]
          Length = 221

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D+  + ++EI AV L      + +T++     + P  G   SPEAL  +G
Sbjct: 20  VVIDVETAGFDANRNALLEIAAVTLRMNDAGWLETDQCLHFHIEPFEGAILSPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +Q    A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPHNPLRGAVSEYEALHAIFKVVRKGIKDQECNRAVIVAHNAHFDHSFLMAAAERAKLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C    I       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACISAEIPFDSSQAHSALYDTQQTALLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|262379336|ref|ZP_06072492.1| ribonuclease T [Acinetobacter radioresistens SH164]
 gi|262298793|gb|EEY86706.1| ribonuclease T [Acinetobacter radioresistens SH164]
          Length = 219

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 24/186 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G +++ D ++EI  + ++ Y +  +      +   + P  G      +L   
Sbjct: 23  VVVDVETAGFNAQTDALLEIACIPII-YDEEGKFIPGPAYHAHINPFEGANLDRRSLDFI 81

Query: 64  GITDEF--------LKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR 112
           G+ D F          +K +   IF    D   EQ   +A  + HNA FD+GF+ A + R
Sbjct: 82  GV-DPFNPMRMAMAEDEKTALKRIFKSIHDIRREQLCTHAILVGHNAHFDLGFLQAAINR 140

Query: 113 I---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
               N++P     + DT++++       +  L   C + GI    +  H AL D+   ++
Sbjct: 141 SGTKNQNPFHSFSVFDTVTLSALMF--GQTVLAKSCLQAGIEFDGKEAHSALYDTQKTAE 198

Query: 170 VYIKMM 175
           ++  ++
Sbjct: 199 LFCYIL 204


>gi|46908132|ref|YP_014521.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes serotype 4b str. F2365]
 gi|46881402|gb|AAT04698.1| ATP-dependent helicase DinG [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 928

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R IV D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  ++ L GI
Sbjct: 5   RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +D
Sbjct: 62  SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           T+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161


>gi|262044634|ref|ZP_06017689.1| ribonuclease T [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259038035|gb|EEW39251.1| ribonuclease T [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 215

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGF--INAELQRIN 114
           I         + +  +  +IF        E +   A  +AHNA FD  F    AE   + 
Sbjct: 80  INPHDPQLGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACIAAGMPFDGAQAHSALYDTEQTAQLFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|254827216|ref|ZP_05231903.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165]
 gi|258599599|gb|EEW12924.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165]
          Length = 928

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R IV D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  ++ L GI
Sbjct: 5   RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +D
Sbjct: 62  SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           T+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161


>gi|47096482|ref|ZP_00234074.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254899404|ref|ZP_05259328.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes J0161]
 gi|254912457|ref|ZP_05262469.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818]
 gi|254936784|ref|ZP_05268481.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900]
 gi|284802344|ref|YP_003414209.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5578]
 gi|284995486|ref|YP_003417254.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5923]
 gi|47015135|gb|EAL06076.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258609379|gb|EEW21987.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900]
 gi|284057906|gb|ADB68847.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5578]
 gi|284060953|gb|ADB71892.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5923]
 gi|293590439|gb|EFF98773.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818]
          Length = 928

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R IV D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  ++ L GI
Sbjct: 5   RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +D
Sbjct: 62  SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           T+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEF--NLGHDKPHRADSDAEVTAD 161


>gi|320668677|gb|EFX35482.1| ribonuclease T [Escherichia coli O157:H7 str. LSU-61]
          Length = 215

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDITLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112
           I D    D+ + S  +    + F              A  +AHNA FD  F+ A  +R  
Sbjct: 80  I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 137

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   + ++ 
Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195

Query: 173 KMM 175
           +++
Sbjct: 196 EIV 198


>gi|255320382|ref|ZP_05361566.1| ribonuclease T [Acinetobacter radioresistens SK82]
 gi|255302577|gb|EET81810.1| ribonuclease T [Acinetobacter radioresistens SK82]
          Length = 215

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 24/186 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G +++ D ++EI  + ++ Y +  +      +   + P  G      +L   
Sbjct: 19  VVVDVETAGFNAQTDALLEIACIPII-YDEEGKFIPGPAYHAHINPFEGANLDRRSLDFI 77

Query: 64  GITDEF--------LKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR 112
           G+ D F          +K +   IF    D   EQ   +A  + HNA FD+GF+ A + R
Sbjct: 78  GV-DPFNPMRMAMAEDEKTALKRIFKSIHDIRREQLCTHAILVGHNAHFDLGFLQAAINR 136

Query: 113 I---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
               N++P     + DT++++       +  L   C + GI    +  H AL D+   ++
Sbjct: 137 SGTKNQNPFHSFSVFDTVTLSALMF--GQTVLAKSCLQAGIEFDGKEAHSALYDTQKTAE 194

Query: 170 VYIKMM 175
           ++  ++
Sbjct: 195 LFCYIL 200


>gi|224500250|ref|ZP_03668599.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes Finland 1988]
 gi|254831500|ref|ZP_05236155.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 10403S]
          Length = 928

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R IV D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  ++ L GI
Sbjct: 5   RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +D
Sbjct: 62  SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           T+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161


>gi|261335679|emb|CBH18673.1| exonuclease, putative [Trypanosoma brucei gambiense DAL972]
          Length = 366

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 10/137 (7%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-------DYSKTNRTFQVFLCPNGRKN 55
           R   +  +  D+ETTG+    D II I  VELL        +  + R+F   + P  +K 
Sbjct: 97  RLQPLSAVCIDVETTGIAPTKDEIISIAVVELLFGAAGHNQWVLSGRSFHRLVKPT-KKV 155

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRIN 114
           S  A ++H +T + L+ +P F++I  +   F ++  +   +  A  D+ +   +    + 
Sbjct: 156 SSSAYRVHKLTSKVLERQPPFAAILPDLAAFLSDVRSGSTS-TAAGDIHYKGPDGTNNVE 214

Query: 115 KDPLDPSRIIDTLSIAR 131
             PL   R   T+S++R
Sbjct: 215 CVPLSSGRAAATVSVSR 231



 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 95  IAHNAKFDVGFINAELQRINKDPL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
           IAHNA FD  F+     R   + +    S +  T+S+ R  +P    +L   C   GI  
Sbjct: 266 IAHNAAFDRNFLYQSALRNGWEVVWDKQSPLTCTMSMFRALYPECPTNLTKACSLAGIDA 325

Query: 153 SHRS-KHGALLDSHLLSDVYIKM 174
           + R  +H AL D+ L   ++I +
Sbjct: 326 AGREDRHDALQDAQLCGHLFIYL 348


>gi|184200503|ref|YP_001854710.1| DNA polymerase III subunit epsilon [Kocuria rhizophila DC2201]
 gi|183580733|dbj|BAG29204.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila
           DC2201]
          Length = 232

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 17/172 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  FD+ETTG D +  RI+    V +       + ++ +L   G +   EA  +HG++ +
Sbjct: 12  RACFDLETTGRDPQQARIVTASVVLVSPAGDVLQEWE-WLADPGVEIPEEAAAVHGVSTD 70

Query: 69  FLK--DKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
             +   +P        S + + FW     +    +A NA +D+  +  E +R      +P
Sbjct: 71  RARAEGRPVAEVAAELSEVLAGFW----REGVPVLAFNAAYDLTVLTRETERHGLPAPEP 126

Query: 121 SRIIDTLSIARRKHPSSRN--DLNSLCKRYGITI--SHRSKHGALLDSHLLS 168
             ++D   + ++ H   R    L +LC+ YG+ +  +H S   AL    L +
Sbjct: 127 FPVLDPFVLNKQVHRYRRGKRTLGALCEEYGVVLDAAHTSAEDALATERLAA 178


>gi|15602853|ref|NP_245925.1| ribonuclease T [Pasteurella multocida subsp. multocida str. Pm70]
 gi|13431828|sp|P57896|RNT_PASMU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|12721315|gb|AAK03072.1| Rnt [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 220

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 83/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           ++ D+ET G ++K D ++E+ A+ +          ++T    + P    N +PE+L+ +G
Sbjct: 24  VIIDVETAGFNAKTDALLELAAITVKMNEDGLLVPDQTCHFHIEPFAGANINPESLQFNG 83

Query: 65  I-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQR--IN 114
           I     L+   S +   +E +    +       Q +  +AHNA FD  F+ A  +R  + 
Sbjct: 84  IDIHNPLRGAVSETVAITELFKMVRKAQKAADCQRSIIVAHNAAFDQSFLMAAAERTGVK 143

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P  + DT +++       +  L   C+   I    +  H AL D+   ++++  M
Sbjct: 144 RNPFHPFGMFDTATLSGFMF--GQTVLVKACQAAQIAFDGKQAHSALYDTERTAELFCYM 201

Query: 175 M 175
           +
Sbjct: 202 V 202


>gi|330502360|ref|YP_004379229.1| ribonuclease T [Pseudomonas mendocina NK-01]
 gi|328916646|gb|AEB57477.1| ribonuclease T [Pseudomonas mendocina NK-01]
          Length = 224

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 31/188 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-----------GRKNSP 57
           +V D+ET G +S  D ++EI A  + +D S        FL P+           G     
Sbjct: 32  VVVDVETGGFNSATDALLEIAATTIAMDESG-------FLYPDHTHFFRIEPFEGANIEQ 84

Query: 58  EALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAE 109
            AL+  GI  D  L+   S      E +    +       + A  + HN+ FD+GF+NA 
Sbjct: 85  AALEFTGIKLDHPLRMAVSEEHALGEIFKGLRKSIKSAGCKRAILVGHNSSFDLGFLNAA 144

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           + R  I ++P  P    DT ++A   +   +  L   C+  GI    +  H A  D+   
Sbjct: 145 VARCGIKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIEFDGKEAHSARYDTEKT 202

Query: 168 SDVYIKMM 175
           ++++  ++
Sbjct: 203 AELFCGIV 210


>gi|283833269|ref|ZP_06353010.1| ribonuclease T [Citrobacter youngae ATCC 29220]
 gi|291070906|gb|EFE09015.1| ribonuclease T [Citrobacter youngae ATCC 29220]
          Length = 215

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        E     A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPNNPLRGAVSEYDALHAIFKMVRKGIKESGCNRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLS--LGQTVLSKACLAAGMEFDGNQAHSALYDTERTAVLFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|281355577|ref|ZP_06242071.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
           BAA-548]
 gi|281318457|gb|EFB02477.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
           BAA-548]
          Length = 268

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 6/130 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIE+TG+  + DRI+EI  +++     T  T +  L P      P A  +HGI+D  
Sbjct: 12  VVFDIESTGVMPQRDRIVEIAVLKIFPDGHTQNTVRR-LNPE-MPIPPGATAIHGISDAD 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-PLDPSRIIDTL 127
           + D P+F  I  + + +   ++ +   +N   FD+  + AE +R      +D  ++ID  
Sbjct: 70  VADCPTFLLIAEKLFRYI--EDCDLAGYNITGFDIPMLEAEFKRAGFTFKVDDRKVIDAY 127

Query: 128 SIARRKHPSS 137
           +I  + +P +
Sbjct: 128 NIFCKLYPRT 137


>gi|15610847|ref|NP_218228.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           H37Rv]
 gi|148663576|ref|YP_001285099.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           H37Ra]
 gi|167970866|ref|ZP_02553143.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           H37Ra]
 gi|306778068|ref|ZP_07416405.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu001]
 gi|306974185|ref|ZP_07486846.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu010]
 gi|307081893|ref|ZP_07491063.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu011]
 gi|307086506|ref|ZP_07495619.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu012]
 gi|2960135|emb|CAA18033.1| PROBABLE DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ [Mycobacterium
           tuberculosis H37Rv]
 gi|148507728|gb|ABQ75537.1| DNA polymerase III subunit epsilon DnaQ [Mycobacterium tuberculosis
           H37Ra]
 gi|308213597|gb|EFO72996.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu001]
 gi|308356458|gb|EFP45309.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu010]
 gi|308360405|gb|EFP49256.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu011]
 gi|308364101|gb|EFP52952.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu012]
          Length = 329

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
             +P F+ I  E  D    +    +AHN  FD  F+ AE +    + P+D   ++ T+ +
Sbjct: 75  DGQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR      N  L +L   +G  +  +  H A  D  +L+ +    +
Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDVRVLTGILAAAL 175


>gi|304397653|ref|ZP_07379530.1| ribonuclease T [Pantoea sp. aB]
 gi|304354825|gb|EFM19195.1| ribonuclease T [Pantoea sp. aB]
          Length = 222

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 22/195 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A+ L +D   + + ++T    + P  G    PEAL   G
Sbjct: 20  VVIDVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHPEALAFTG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +     A  +AHNA FD+ F++A  +R  + 
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFDLNFMSAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACIAAGMEFDSTQAHSALYDTQQTATLFCEL 197

Query: 175 M-----VGGSQINFG 184
           +     +GG  + F 
Sbjct: 198 VNRWKRLGGWPLPFA 212


>gi|171743164|ref|ZP_02918971.1| hypothetical protein BIFDEN_02291 [Bifidobacterium dentium ATCC
           27678]
 gi|283455845|ref|YP_003360409.1| DNA polymerase III, subunit epsilon [Bifidobacterium dentium Bd1]
 gi|171278778|gb|EDT46439.1| hypothetical protein BIFDEN_02291 [Bifidobacterium dentium ATCC
           27678]
 gi|283102479|gb|ADB09585.1| DNA polymerase III, epsilon subunit [Bifidobacterium dentium Bd1]
          Length = 212

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 40/179 (22%)

Query: 10  IVFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEAL-KLHGIT 66
           ++ D ETTGL  +    IIEIGA+ +   ++  R  F+  + P  ++  PE + +L GI+
Sbjct: 26  VMLDTETTGLHPEEGATIIEIGALLVTPGNENARPRFEQLVDP--QRPLPEFISRLTGIS 83

Query: 67  DEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           D  L+DKP+  +    F  + ++     +    IAHNA+FD+GF++A             
Sbjct: 84  DGMLRDKPTADAAMLRFHQWLDDVWPTGKPLTIIAHNAEFDIGFLDA------------- 130

Query: 122 RIIDTLSIARRKHPSSRN--DLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                   A R H    N  D   LC K     ++ R +H      H +SD+ +   +G
Sbjct: 131 --------AERAHDPDANEFDCRWLCTKEMSWELNPRKRH------HRVSDLIVDYRIG 175


>gi|170768829|ref|ZP_02903282.1| ribonuclease T [Escherichia albertii TW07627]
 gi|170122377|gb|EDS91308.1| ribonuclease T [Escherichia albertii TW07627]
          Length = 215

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +   IF              A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPNDPERGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A       +  L+  C+  G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMEFDSNQAHSALYDTERTAVLFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|254852803|ref|ZP_05242151.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503]
 gi|300763791|ref|ZP_07073788.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017]
 gi|258606130|gb|EEW18738.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503]
 gi|300515527|gb|EFK42577.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017]
          Length = 928

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R IV D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  ++ L GI
Sbjct: 5   RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +D
Sbjct: 62  SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           T+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEF--NLGHDKPHRADSDAEVTAD 161


>gi|156933577|ref|YP_001437493.1| exodeoxyribonuclease X [Cronobacter sakazakii ATCC BAA-894]
 gi|156531831|gb|ABU76657.1| hypothetical protein ESA_01397 [Cronobacter sakazakii ATCC BAA-894]
          Length = 220

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      ++E+ +V+++D +  N      + P+ R  S +A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---VVEVASVDIIDGAIVN-PMSDLVRPD-RPISHQAMAIHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   +        ++W +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPYIEEVIPRY------HGSQWYVAHNASFDRKVL----------PEMPGEWICTVKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  R     L K   + +        H AL D ++ + + +++M
Sbjct: 103 ARRLWPGIRYSNMGLYKSLKLQVETPEGLHHHRALFDCYITAALLLEIM 151


>gi|332534821|ref|ZP_08410645.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035733|gb|EGI72220.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 207

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 18/193 (9%)

Query: 1   MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           ++ KN +  R +V D+E TGLD+K   I+ +  V ++D      +    L     K+  +
Sbjct: 15  LLGKNALQQRYLVIDLELTGLDAKQHEIVSVAWV-IIDNQCIKMSKSQHLINKDVKSLAQ 73

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           +   HGI+D+ +    S +SI  +  + F++     + HNA  D  F+   L+  N   +
Sbjct: 74  SPVFHGISDDAIAKGLSLNSILMQLSNHFSD--CILVFHNAMLDWVFLKIALKNANI-TI 130

Query: 119 DPSRIIDTLSIARRK--HPSS--RND---LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            P  I+DTL I +++  H S+  + D   LN+   RY +   H   H AL D+   +++ 
Sbjct: 131 RPKLILDTLHIEQKRLLHHSTEIKQDDLTLNACRTRYELPSYH--CHHALTDAQATAEL- 187

Query: 172 IKMMVGGSQINFG 184
             ++    QI+ G
Sbjct: 188 --LLAQCHQISRG 198


>gi|21230975|ref|NP_636892.1| ribonuclease T [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66769021|ref|YP_243783.1| ribonuclease T [Xanthomonas campestris pv. campestris str. 8004]
 gi|188992135|ref|YP_001904145.1| ribonuclease T [Xanthomonas campestris pv. campestris str. B100]
 gi|24638163|sp|Q8PAG3|RNT_XANCP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|81305015|sp|Q4UT60|RNT_XANC8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|21112595|gb|AAM40816.1| ribonuclease T [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574353|gb|AAY49763.1| ribonuclease T [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733895|emb|CAP52101.1| Ribonuclease T [Xanthomonas campestris pv. campestris]
          Length = 216

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 17/181 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCPN-GRKNSPEALKLH 63
            +V D+ET G D     ++EI  V + +D         T    L P  G +  P++L++ 
Sbjct: 27  PVVVDVETGGFDWNKHALLEIACVPIEMDAQGHFFPGETASAHLVPAPGLEIDPKSLEIT 86

Query: 64  GITDE----FLK-DKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +    F K +K +   +F+        +  Q A  + HNA FD+ F+NA + R+  
Sbjct: 87  GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 146

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ K
Sbjct: 147 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNSADAHSAVYDTEQTARLFCK 204

Query: 174 M 174
           +
Sbjct: 205 I 205


>gi|307638212|gb|ADN80662.1| DNA polymerase III epsilon subunit [Helicobacter pylori 908]
 gi|325996805|gb|ADZ52210.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2018]
 gi|325998398|gb|ADZ50606.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2017]
          Length = 287

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GIT E   
Sbjct: 77  DLETTGSCPLKHEILEIGAVQVRGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 132

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 133 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221


>gi|295106393|emb|CBL03936.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 1031

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 9/149 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG    +D + +I A  + +  +    F  F+ P G+    +   L  I DE 
Sbjct: 48  VVVDTETTGFSFNHDELTQIAAARM-EQGRIVDWFITFVNP-GKPIPEDVAYLTDIHDED 105

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P  S   SE  +F  +  A+ +AHNA+FD  F     +  +  PL  +  ID+L +
Sbjct: 106 VADAPLPSEALSELAEFVGD--AKIVAHNAEFDRTFTT---RHPSGYPLLENTWIDSLDL 160

Query: 130 ARRKHPSSRND-LNSLCKRYGITIS-HRS 156
           AR   P  ++  L  L K +G  +S HR+
Sbjct: 161 ARIALPRLKSHRLLDLVKAFGAPLSTHRA 189


>gi|226224503|ref|YP_002758610.1| ATP-dependent helicase [Listeria monocytogenes Clip81459]
 gi|254825606|ref|ZP_05230607.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194]
 gi|225876965|emb|CAS05674.1| Putative ATP-dependent helicase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|293594849|gb|EFG02610.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194]
 gi|328466248|gb|EGF37405.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 1816]
          Length = 928

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R IV D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  ++ L GI
Sbjct: 5   RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +D
Sbjct: 62  SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           T+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEF--NLGHDKPHRADSDAEVTAD 161


>gi|317014965|gb|ADU82401.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           Gambia94/24]
          Length = 287

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GIT E   
Sbjct: 77  DLETTGSCPLKHEILEIGAVQVRGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 132

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 133 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221


>gi|16803938|ref|NP_465423.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes EGD-e]
 gi|224501301|ref|ZP_03669608.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes FSL R2-561]
 gi|16411352|emb|CAC99977.1| dinG [Listeria monocytogenes EGD-e]
          Length = 928

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R IV D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  ++ L GI
Sbjct: 5   RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +D
Sbjct: 62  SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           T+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161


>gi|329920271|ref|ZP_08277055.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus iners SPIN 1401G]
 gi|328936316|gb|EGG32764.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus iners SPIN 1401G]
          Length = 933

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   K +DRII+ G   + D  K  +T+   + P   K  P A++ L GI+++
Sbjct: 13  VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+ 
Sbjct: 70  EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126

Query: 129 IARRKHPS 136
           +A+   P+
Sbjct: 127 LAQIAFPT 134


>gi|116492274|ref|YP_804009.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Pediococcus pentosaceus ATCC 25745]
 gi|116102424|gb|ABJ67567.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Pediococcus pentosaceus ATCC 25745]
          Length = 178

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 5/114 (4%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI    + D P+F  ++     FF       +AHNA FD   +   L+R   + L 
Sbjct: 50  VQVHGIHQADVSDAPTFPELWPVVKQFFTPDKLV-VAHNATFDNSVLKKTLERYQINRL- 107

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P + +DTL  ++  +P   N  LN++C   GI + H   H AL DS   +++ +
Sbjct: 108 PYQTLDTLRTSKSFYPDYTNHKLNTICDNLGIDLQHH--HNALDDSRACANILL 159


>gi|312872972|ref|ZP_07733032.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2062A-h1]
 gi|311091494|gb|EFQ49878.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2062A-h1]
          Length = 933

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   K +DRII+ G   + D  K  +T+   + P   K  P A++ L GI+++
Sbjct: 13  VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+ 
Sbjct: 70  EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126

Query: 129 IARRKHPS 136
           +A+   P+
Sbjct: 127 LAQIAFPT 134


>gi|301300766|ref|ZP_07206950.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851616|gb|EFK79316.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 929

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITD 67
           V D+ETTG     +D+II+       D+ ++N+    F  L   G     E  KL GI D
Sbjct: 9   VVDLETTGPKQDGSDKIIQFSC----DFVQSNKIVNHFSTLINPGMPIPVEVKKLTGIKD 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++  P F  +    +     QN  ++AHN  FD  F+++EL+R     L+   ++DT+
Sbjct: 65  KDVRYAPYFDEVAGTIYAML--QNTTFVAHNVNFDYSFLSSELERAGYPELELP-MMDTV 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            + +  +P+  +       +Y + +SH   H A  D+   +++ I +
Sbjct: 122 QLTQIIYPTLVSYRLIDISKY-LQLSHIHPHKADSDTKATAELLINL 167


>gi|169830753|ref|YP_001716735.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637597|gb|ACA59103.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 921

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 19/190 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           +V D+ETTGLD + D I+E+G V + D  K    F   + P+  +  P  +K L G+ D 
Sbjct: 6   VVLDLETTGLDPQADEIVEVGLVRVED-GKPGAVFHALVRPS--RPLPARIKSLTGLDDA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L ++P +S +      F    N   + H+  FD+ F+              ++  DT+ 
Sbjct: 63  DLAERPDWSEVRPAVTAFLG--NEPVVGHHVHFDLAFLERHAG------YRATQAYDTVD 114

Query: 129 IAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +AR      PS R +L  LC    + +  R  H A+ D+   + ++  ++    ++ F  
Sbjct: 115 LARLVLPGLPSYRLEL--LCAH--LDLPERPGHRAMEDARAAAGLFTALLERFCRLEFTT 170

Query: 186 KTNEDRFFKE 195
           +    R   +
Sbjct: 171 QATVHRILSQ 180


>gi|325912075|ref|ZP_08174473.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus iners
           UPII 143-D]
 gi|325476025|gb|EGC79193.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus iners
           UPII 143-D]
          Length = 933

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   K +DRII+ G   + D  K  +T+   + P   K  P A++ L GI+++
Sbjct: 13  VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+ 
Sbjct: 70  EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126

Query: 129 IARRKHPS 136
           +A+   P+
Sbjct: 127 LAQIAFPT 134


>gi|315653552|ref|ZP_07906472.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195]
 gi|315488914|gb|EFU78556.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195]
          Length = 936

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   K +DRII+ G   + D  K  +T+   + P   K  P A++ L GI+++
Sbjct: 16  VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+ 
Sbjct: 73  EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 129

Query: 129 IARRKHPS 136
           +A+   P+
Sbjct: 130 LAQIAFPT 137


>gi|312875685|ref|ZP_07735686.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2053A-b]
 gi|311088939|gb|EFQ47382.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2053A-b]
          Length = 933

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   K +DRII+ G   + D  K  +T+   + P   K  P A++ L GI+++
Sbjct: 13  VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+ 
Sbjct: 70  EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126

Query: 129 IARRKHPS 136
           +A+   P+
Sbjct: 127 LAQIAFPT 134


>gi|163794470|ref|ZP_02188441.1| DNA polymerase III, epsilon subunit [alpha proteobacterium BAL199]
 gi|159180194|gb|EDP64717.1| DNA polymerase III, epsilon subunit [alpha proteobacterium BAL199]
          Length = 458

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 8/169 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            I  DIETTGLD+     ++ GA+ +     K +   +  L P G      ++ +HGITD
Sbjct: 14  AIAIDIETTGLDASRAHAVQFGAIPIAKGVLKPDDACEQMLNP-GIPIPSSSIAIHGITD 72

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +++ P+ S ++         +N   I H+  FD+  + AE +R   D   P R +   
Sbjct: 73  AMVRNAPTLSDVWPNL--VGQWKNRVVIGHSIGFDLTVLAAEAKRKKLDWQKP-RALCVR 129

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +A    P+ + + L++L     + +  R++H AL D+     +++ ++
Sbjct: 130 MLATIAAPTLASHSLDALAT--WLNLETRNRHRALGDAEAAGLIFLALI 176


>gi|238755817|ref|ZP_04617148.1| Exodeoxyribonuclease 10 [Yersinia ruckeri ATCC 29473]
 gi|238705975|gb|EEP98361.1| Exodeoxyribonuclease 10 [Yersinia ruckeri ATCC 29473]
          Length = 249

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 27/175 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           KM   V D ET GLD     I+EI +++ +D   TN      + P+ R  S EA+ +H I
Sbjct: 29  KMNFRVIDTETCGLDGG---IVEIASLDFIDGEITN-PMSDLVSPD-RPISIEAMAIHHI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+E ++ KP  +    ++     + +  ++AHNA FD G +          P      I 
Sbjct: 84  TEEMVEGKPRIAVAVGKY-----QGSPYYVAHNAPFDRGVL----------PEMGGEWIC 128

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITI-----SHRSKHGALLDSHLLSDVYIKMM 175
           T  +AR  +P  +     L  RY + +     +    H AL D ++ + ++ ++M
Sbjct: 129 TYKLARALYPDIKYSNQYL--RYALRLDVTPPADLYPHRALYDCYITAALFQRIM 181


>gi|218548595|ref|YP_002382386.1| exodeoxyribonuclease X [Escherichia fergusonii ATCC 35469]
 gi|218356136|emb|CAQ88753.1| DNA exonuclease X [Escherichia fergusonii ATCC 35469]
 gi|324113580|gb|EGC07555.1| exonuclease [Escherichia fergusonii B253]
 gi|325497013|gb|EGC94872.1| exodeoxyribonuclease X [Escherichia fergusonii ECD227]
          Length = 220

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++D   TN      L    R  +P+A+ +H IT+  +
Sbjct: 4   VIDTETCGLQGG---IVEIASVDVVDGKITNPMSH--LVRPDRPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       ++W +AHNA FD        +R+   P  P   I T+ +
Sbjct: 59  ADKPWIEEVIPHYY------GSDWYVAHNASFD--------RRVL--PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           +R   P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 103 SRHLWPGIKYSNMALYKSRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|312874151|ref|ZP_07734185.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2052A-d]
 gi|311090221|gb|EFQ48631.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2052A-d]
          Length = 933

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   K +DRII+ G   + D  K  +T+   + P   K  P A++ L GI+++
Sbjct: 13  VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+ 
Sbjct: 70  EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126

Query: 129 IARRKHPS 136
           +A+   P+
Sbjct: 127 LAQIAFPT 134


>gi|259500615|ref|ZP_05743517.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335]
 gi|259167999|gb|EEW52494.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335]
          Length = 936

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   K +DRII+ G   + D  K  +T+   + P   K  P A++ L GI+++
Sbjct: 16  VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+ 
Sbjct: 73  EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 129

Query: 129 IARRKHPS 136
           +A+   P+
Sbjct: 130 LAQIAFPT 137


>gi|149912028|ref|ZP_01900621.1| ribonuclease T [Moritella sp. PE36]
 gi|149804889|gb|EDM64924.1| ribonuclease T [Moritella sp. PE36]
          Length = 231

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIET G +++ D ++EI A  L +D   Y K + T    + P  G      AL   G
Sbjct: 19  VVIDIETAGFNAQTDAMLEIAASILEMDEDGYLKISHTLHFNVEPFEGANLEQAALDFTG 78

Query: 65  I--TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQR--I 113
           I  T+      P   +I +E +    +         A  +AHNA FD  F++A   R  I
Sbjct: 79  IDPTNPLRGAVPEREAI-TEIYKAVRKGLKDTGCHRAIMVAHNAAFDHAFLSAASNREKI 137

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A       +  L   C   GI   H+  H A  D+   ++++  
Sbjct: 138 KRNPFHPFATFDTTTLAGLA--VGQTVLAKACVAAGIPFDHKQAHSAKYDTEQTAELFCY 195

Query: 174 MM 175
           ++
Sbjct: 196 IV 197


>gi|87121336|ref|ZP_01077226.1| ribonuclease T [Marinomonas sp. MED121]
 gi|86163493|gb|EAQ64768.1| ribonuclease T [Marinomonas sp. MED121]
          Length = 216

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 25/185 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--------ELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +V D+ET G ++K D ++EI A         EL  +       + F   N  K+   AL+
Sbjct: 14  VVIDVETAGFNNKTDALLEIAASILRMDENGELYIHETIEFNVRPFEGANLEKS---ALE 70

Query: 62  LHGITDEF------LKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             GI D F      + +      IFS+          + A  + HNA FD GF+NA ++R
Sbjct: 71  FTGI-DPFDPERKDVVEAEVLGQIFSKVRKELKSVGCKRAILVGHNAAFDHGFLNAAIER 129

Query: 113 --INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             I ++P  P    DT S+A       +  L   C+   I  S+   H A  D+   +++
Sbjct: 130 CDIKRNPFHPFSSFDTASLAGLAF--GQTVLAKACEAAAIPFSNAEAHSAKYDTEKTAEL 187

Query: 171 YIKMM 175
           + +++
Sbjct: 188 FCEIV 192


>gi|332653929|ref|ZP_08419673.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae
           bacterium D16]
 gi|332517015|gb|EGJ46620.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae
           bacterium D16]
          Length = 236

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 22/177 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-------LDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +VFD ET+GLD  ND+IIE+ A+ +       L  +    TF     P G       + L
Sbjct: 15  VVFDTETSGLDFDNDQIIELAALRVERTATGGLRIAGKMDTF--IKLPEGETLPENIVSL 72

Query: 63  HGITDEFLKD---KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            GITDE L+    +P+ ++  S+            IAHNA+FD  F+   L+      +D
Sbjct: 73  TGITDERLQTEGVQPAKAA--SQIAKLMQNGPTLMIAHNAQFDACFLRGLLRGQKVGRID 130

Query: 120 PSRIIDTLSIA--RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +D+L++   RR +P   + L +    Y +T   ++ H A+ D   L +V   M
Sbjct: 131 ---WLDSLTVYKDRRAYP---HKLANAIIAYDLTGKVQNSHRAIDDVLALFEVLKAM 181


>gi|302191304|ref|ZP_07267558.1| Rad3-related DNA helicase [Lactobacillus iners AB-1]
          Length = 933

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   K +DRII+ G   + D  K  +T+   + P   K  P A++ L GI+++
Sbjct: 13  VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+ 
Sbjct: 70  EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126

Query: 129 IARRKHPS 136
           +A+   P+
Sbjct: 127 LAQIAFPT 134


>gi|298737180|ref|YP_003729710.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8]
 gi|298356374|emb|CBI67246.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8]
          Length = 323

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GIT E   
Sbjct: 113 DLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 168

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 169 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 225

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 226 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 257


>gi|21242321|ref|NP_641903.1| ribonuclease T [Xanthomonas axonopodis pv. citri str. 306]
 gi|24638164|sp|Q8PM62|RNT_XANAC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|21107753|gb|AAM36439.1| ribonuclease T [Xanthomonas axonopodis pv. citri str. 306]
          Length = 213

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 19/181 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-----QVFLCPN-GRKNSPEALKLH 63
           +V D+ET G D     ++EI  V + +     R F        L P  G +  P++L++ 
Sbjct: 28  VVVDVETGGFDWNKHALLEIACVPI-EMGADGRFFPGETASAHLVPAPGLEIDPKSLEIT 86

Query: 64  GITDE----FLK-DKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +    F K +K +   +F+        +  Q A  + HNA FD+ F+NA + R+  
Sbjct: 87  GIVLDHPFRFAKQEKEALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 146

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ K
Sbjct: 147 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCK 204

Query: 174 M 174
           +
Sbjct: 205 I 205


>gi|15616807|ref|NP_240019.1| ribonuclease T [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219681560|ref|YP_002467946.1| ribonuclease T [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|219682118|ref|YP_002468502.1| ribonuclease T [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|257471245|ref|ZP_05635244.1| ribonuclease T [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|11387052|sp|P57285|RNT_BUCAI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|25356015|pir||A84952 ribonuclease T [imported] - Buchnera sp. (strain APS)
 gi|10038870|dbj|BAB12905.1| ribonuclease T [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219621851|gb|ACL30007.1| ribonuclease T [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219624403|gb|ACL30558.1| ribonuclease T [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|311085930|gb|ADP66012.1| ribonuclease T [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086501|gb|ADP66582.1| ribonuclease T [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
 gi|311087083|gb|ADP67163.1| ribonuclease T [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
 gi|311087635|gb|ADP67714.1| ribonuclease T [Buchnera aphidicola str. JF98 (Acyrthosiphon
           pisum)]
          Length = 221

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIET G ++  D ++EI  + L    L +     T    + P  G   + +A+  + 
Sbjct: 20  VVIDIETAGFNANTDAVLEIAIITLKMDELGWLHKEDTLHFHIEPFKGSIINSDAIAFNK 79

Query: 65  ITDEF------LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113
           I D F      + +K +  SI  +  +    Q       +AHNA FD  F+ A +QR  I
Sbjct: 80  I-DPFNPLRGAISEKIAIQSILKKVRNGIKIQGCSRGIVVAHNANFDHNFLMAAIQRVKI 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             +P  P    DT +++       +  L+  CK  G++  +   H AL D+   ++++ +
Sbjct: 139 KNNPFHPFATFDTAALSGL--VVGQTVLSKACKAIGLSFDNHQAHSALYDTLQTANLFCE 196

Query: 174 MM 175
           ++
Sbjct: 197 LV 198


>gi|312871734|ref|ZP_07731822.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           3008A-a]
 gi|311092676|gb|EFQ51032.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           3008A-a]
          Length = 933

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   K +DRII+ G   + D  K  +T+   + P   K  P A++ L GI+++
Sbjct: 13  VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+ 
Sbjct: 70  EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126

Query: 129 IARRKHPS 136
           +A+   P+
Sbjct: 127 LAQIAFPT 134


>gi|163755942|ref|ZP_02163059.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1]
 gi|161324113|gb|EDP95445.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1]
          Length = 257

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 82/161 (50%), Gaps = 10/161 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG++   DRI+EI  +++  Y   N+  + +L         E  ++HGITD+ + 
Sbjct: 12  FDLETTGVEVAKDRIVEIAILKV--YPNGNKESKTWLVNPEMPIPAETSEIHGITDDKVA 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI-IDTLSI 129
           ++P+F  +  E ++    ++++   +N+ +FD+  +  EL R + D    +++ ID  +I
Sbjct: 70  NEPTFKELSKEIYNMI--KDSDLAGYNSDRFDIPLLAEELLRADIDFDMKNKVSIDVQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
               H   +  L++  K Y         HGA  D++   +V
Sbjct: 128 F---HKMEKRTLSAAYKFY-CGKELEGAHGAEADTNATYEV 164


>gi|288800441|ref|ZP_06405899.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332654|gb|EFC71134.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
          Length = 285

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 11/142 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           +VFD+ETTGLD  NDRII+I  +++    K  R   +F+ P  +K  P+ ++ L  IT++
Sbjct: 10  VVFDLETTGLDLVNDRIIQISYIKVHPDGKEERE-NLFINP--QKPIPQEVEALTHITND 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD-PLDPSRIIDT 126
            +KD P+F+ I  + ++ F     ++   N+  FD+  +  E  R         S+++D 
Sbjct: 67  MVKDAPTFAEIAQKLYEKFT--GCDFAGFNSNHFDIPMLAEEFSRAGLSYDFSRSKLVDA 124

Query: 127 LSIARRKHPSSRNDLNSLCKRY 148
             I    H   R +L +  K Y
Sbjct: 125 QVIF---HKMERRNLAAAYKFY 143


>gi|308185320|ref|YP_003929453.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180]
 gi|308061240|gb|ADO03136.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180]
          Length = 287

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GIT E   
Sbjct: 77  DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 132

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 133 NAPSTHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221


>gi|283456242|ref|YP_003360806.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
 gi|283102876|gb|ADB09982.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
          Length = 317

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL+ ++ DR IEIG V +          +  +  +       A  +H I+   
Sbjct: 8   VVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLIRVH---RDIGAQWIHHISAVE 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128
           L   P F  I  E  D    +   ++AHN  FD  F+ +E +R+  D P++   ++ T+ 
Sbjct: 65  LIHAPEFEGIARELRDLLAGRV--FVAHNVAFDSKFLLSEYRRLGTDIPVNSHTMLCTMK 122

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R         L   C+ +G  I +   H AL D+H  + +  ++M
Sbjct: 123 LSRSL--IGVGSLADCCREFG--IDNEDAHSALSDAHATALLLGRLM 165


>gi|254931930|ref|ZP_05265289.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262]
 gi|293583482|gb|EFF95514.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262]
          Length = 928

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R IV D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  ++ L GI
Sbjct: 5   RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +D
Sbjct: 62  SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           T+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEF--NLGHDKPHRADSDAEVTAD 161


>gi|90961663|ref|YP_535579.1| ATP-dependent helicase DinG [Lactobacillus salivarius UCC118]
 gi|90820857|gb|ABD99496.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius
           UCC118]
          Length = 929

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITD 67
           V D+ETTG     +D+II+       D+ ++N+    F  L   G     E  KL GI D
Sbjct: 9   VVDLETTGPKQDGSDKIIQFSC----DFVQSNKIVNHFSTLINPGMPIPVEVKKLTGIKD 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++  P F  +    +     QN  ++AHN  FD  F+++EL+R     L+   ++DT+
Sbjct: 65  KDVRYAPYFDEVAGTIYAML--QNTTFVAHNVNFDYSFLSSELERAGYPELELP-MMDTV 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            + +  +P+  +       +Y + +SH   H A  D+   +++ I +
Sbjct: 122 QLTQIIYPTLVSYRLIDISKY-LQLSHIHPHKADSDTKATAELLINL 167


>gi|299140892|ref|ZP_07034030.1| exonuclease [Prevotella oris C735]
 gi|298577858|gb|EFI49726.1| exonuclease [Prevotella oris C735]
          Length = 286

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 8/123 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           +VFD+ETTGLD  NDRII++  +++       R   +    N  K+ P+ +  L GI DE
Sbjct: 10  VVFDLETTGLDIVNDRIIQLSFIKVCPDGTEERGDHLI---NPGKHIPDMVSDLTGIDDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDT 126
            +KD PSF  + +   + F  +  ++   N+ +FDV  +  E  R   D      R+ID 
Sbjct: 67  KVKDAPSFKQLSATLAEKF--KGCDFAGFNSNRFDVPMLAEEFLRAGIDFDFSKCRLIDA 124

Query: 127 LSI 129
            +I
Sbjct: 125 QTI 127


>gi|206579741|ref|YP_002237768.1| exodeoxyribonuclease X [Klebsiella pneumoniae 342]
 gi|206568799|gb|ACI10575.1| exodeoxyribonuclease X [Klebsiella pneumoniae 342]
          Length = 219

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 29/168 (17%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++D   TN      L    R  +P+A+ +H IT+E +
Sbjct: 4   VIDTETCGLQGG---IVEIASVDIVDGRITNPMSH--LVRPDRPITPQAMAIHRITEEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    I   +        + W +AHNA FD        +R+   P      I T+ +
Sbjct: 59  ADKPWIEEIIPYY------LGSPWYVAHNASFD--------RRVL--PEMSGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITIS-------HRSKHGALLDSHLLSDV 170
           ARR  P  +     L K   + ++       HR+ +   + + LL D+
Sbjct: 103 ARRLWPGIKYSNMGLYKSRKLNVATPPGLHHHRALYDCYITAALLLDI 150


>gi|109948241|ref|YP_665469.1| DNA polymerase III subunit epsilon [Helicobacter acinonychis str.
           Sheeba]
 gi|109715462|emb|CAK00470.1| DNA polymerase III [Helicobacter acinonychis str. Sheeba]
          Length = 282

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ +  L GI  E   
Sbjct: 72  DLETTGSCPLKHEILEIGAVQVSGGKIINR-FETLV---KVKSVPDYISDLTGIAYEDTL 127

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL ++R
Sbjct: 128 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSR 184

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 185 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 216


>gi|95930297|ref|ZP_01313034.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
 gi|95133549|gb|EAT15211.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
          Length = 193

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 10/173 (5%)

Query: 7   MRKIVF---DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           MR+  F   D+ETTGLD   D II   AV++    +  + ++ ++ P      PE+++ H
Sbjct: 1   MREAAFCIVDLETTGLDLTTDTIINAAAVKI-KKGRITKIYETYVKP-PTSIPPESIQFH 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD+ L DKPS   +  EF  F  +  +    H+  FD+  ++  L+      L+ +  
Sbjct: 59  GITDDMLVDKPSIGEVLPEFMTFIGD--SMITGHHINFDLKMLDRHLRENYDCNLEGAPW 116

Query: 124 IDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DT+ + +     ++   L+ L   Y I    R  H AL DS   + V+++++
Sbjct: 117 LDTMLLHKLVMENNTSTQLDDLLNVYCIDCEQR--HRALGDSIATAKVFLRIL 167


>gi|229051643|ref|ZP_04195113.1| exonuclease [Bacillus cereus AH676]
 gi|228721754|gb|EEL73228.1| exonuclease [Bacillus cereus AH676]
          Length = 287

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 10/105 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ-VFLCPNGRKNSPEALKLH 63
           NK + ++ D ETTGL  + D+IIEI  ++L      N   +   + P       EA  +H
Sbjct: 127 NKDQFVILDTETTGLTLR-DQIIEISVIDLAGKILLNSLVKPTIIIP------AEATSIH 179

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           GIT+E + D PS+  I+ E  +         + +NA+FD+G I +
Sbjct: 180 GITNEMVHDAPSWIEIYKELCEV--TAGKTLLIYNAEFDLGMIES 222


>gi|208435412|ref|YP_002267078.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27]
 gi|208433341|gb|ACI28212.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27]
          Length = 264

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GIT E   
Sbjct: 54  DLETTGSCPIKHEILEIGAVQVRGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 109

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 110 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 166

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 167 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 198


>gi|308186683|ref|YP_003930814.1| ribonuclease T [Pantoea vagans C9-1]
 gi|308057193|gb|ADO09365.1| ribonuclease T [Pantoea vagans C9-1]
          Length = 222

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 22/195 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A+ L +D   + + ++T    + P  G    PEAL   G
Sbjct: 20  VVIDVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHPEALAFTG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +     A  +AHNA FD+ F++A  +R  + 
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFDLNFMSAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACIAAGMEFDSTQAHSALYDTQQTATLFCEL 197

Query: 175 M-----VGGSQINFG 184
           +     +GG  + F 
Sbjct: 198 VNRWKRLGGWPLPFA 212


>gi|217033856|ref|ZP_03439281.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10]
 gi|216943754|gb|EEC23197.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10]
          Length = 287

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GIT E   
Sbjct: 77  DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 132

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 133 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221


>gi|281424378|ref|ZP_06255291.1| exonuclease [Prevotella oris F0302]
 gi|281401647|gb|EFB32478.1| exonuclease [Prevotella oris F0302]
          Length = 286

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 8/123 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +VFD+ETTGLD  NDRII++  +++       R   +    N  K+ P+ +  L GI DE
Sbjct: 10  VVFDLETTGLDIVNDRIIQLSFIKVCPDGTEERGDHLI---NPGKHIPDMVSALTGIDDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDT 126
            +KD PSF  + +   + F  +  ++   N+ +FDV  +  E  R   D      R+ID 
Sbjct: 67  KVKDAPSFKQLSATLAEKF--KGCDFAGFNSNRFDVPMLAEEFLRAGIDFDFSKCRLIDA 124

Query: 127 LSI 129
            +I
Sbjct: 125 QTI 127


>gi|281419997|ref|ZP_06250996.1| exonuclease [Prevotella copri DSM 18205]
 gi|281405797|gb|EFB36477.1| exonuclease [Prevotella copri DSM 18205]
          Length = 287

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 8/123 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IVFD+ETTGLD   DRII+I  ++++ D ++  +   V  C    +   E + L GI++E
Sbjct: 10  IVFDLETTGLDMIKDRIIQISYIKVMPDGTEDRKNLYVNPC---MEIPAEVVALTGISNE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD-PLDPSRIIDT 126
            +KD P+F  + +     F     ++  +N+  FDV  +  E  R   D   +  R+ID 
Sbjct: 67  DVKDAPTFKQLAATLEKEFT--GCDFAGYNSNHFDVPMLAEEFLRAGIDFDFNKCRLIDA 124

Query: 127 LSI 129
            +I
Sbjct: 125 QTI 127


>gi|77461145|ref|YP_350652.1| exonuclease [Pseudomonas fluorescens Pf0-1]
 gi|77385148|gb|ABA76661.1| putative exonuclease [Pseudomonas fluorescens Pf0-1]
          Length = 203

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 9/169 (5%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65
           R  V D ETTG+  S + R  EI AV +L+  +    +Q  +  N     P  + +L GI
Sbjct: 3   RIAVIDFETTGISPSSSCRATEI-AVVMLENGRIVERYQSLM--NAGVRIPAFIEQLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  L+  PS   + +E  +F        +AHNA FD  F + EL RI +  L       
Sbjct: 60  SNAMLRTAPSAEKVMNEVNEFVG--CTPLLAHNAAFDQKFWDFELGRIKRTRLQ--NFAC 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +L +ARR  P++ N        +         H A+ D+ + +++ + +
Sbjct: 116 SLLLARRLMPAAPNHKLGTLTTFAQLPHTGQAHRAMADAEMAANLMVHL 164


>gi|218261817|ref|ZP_03476532.1| hypothetical protein PRABACTJOHN_02203 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223763|gb|EEC96413.1| hypothetical protein PRABACTJOHN_02203 [Parabacteroides johnsonii
           DSM 18315]
          Length = 256

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 14/126 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + FD+ETTG++   DRI+EI  V++     + SKT R       P      PE+  +HGI
Sbjct: 10  VFFDLETTGINIVKDRIVEISFVKVYPNGKEESKTRRINPEMPIP------PESTAIHGI 63

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRI 123
           TDE +KD P+F  I          +  +   +N+ +FD+  +  E  R   D  L+  + 
Sbjct: 64  TDEDVKDCPTFKEIAKSLATQI--EGCDLAGYNSNRFDIPLLAEEFLRAGVDIDLNRRKF 121

Query: 124 IDTLSI 129
           ID  +I
Sbjct: 122 IDVQTI 127


>gi|299538599|ref|ZP_07051882.1| ATP-dependent helicase dinG [Lysinibacillus fusiformis ZC1]
 gi|298726186|gb|EFI66778.1| ATP-dependent helicase dinG [Lysinibacillus fusiformis ZC1]
          Length = 923

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 11/170 (6%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           + D+ETTG    N DR+I+I  V + D+ +  RT+  F+ P   K  P  ++ L  IT+E
Sbjct: 9   IVDLETTGHSPANGDRMIQIAIVIMKDW-EIERTYTKFINPG--KAIPTFIQDLTHITNE 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD   F +     ++     +  ++AHNA FD+ F+ AE +R    P    + +DT+ 
Sbjct: 66  DVKDAFPFEAHADYIYELLA--DCVFVAHNADFDLSFLQAEFKRAGL-PKWQGKKMDTVE 122

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKMM 175
           +A+   P S    L  L     I +  +HR+   A   + L    + +++
Sbjct: 123 LAKILFPMSLGFKLGDLAADLNIELANAHRADDDARATAELFKHCWKELL 172


>gi|161503006|ref|YP_001570118.1| exodeoxyribonuclease X [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864353|gb|ABX20976.1| hypothetical protein SARI_01068 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 231

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 29/168 (17%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       ++W +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPLYY------GSQWYVAHNASFDRRVL----------PELPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITIS-------HRSKHGALLDSHLLSDV 170
           +RR  P  +    +L K   +++        HR+ +   + + LL D+
Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDI 150


>gi|124025389|ref|YP_001014505.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. NATL1A]
 gi|123960457|gb|ABM75240.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. NATL1A]
          Length = 292

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGLD++ND  +E+G++     S++    Q FL P    N   A K++ I  E 
Sbjct: 69  LILDTETTGLDNENDDCLEVGSILFNVKSRSVLAQQSFLLPVEINN---AEKINNIPAEI 125

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIIDTLS 128
            +     S     F       N   +AHNA+FD  +    +L +I K P   S  +D ++
Sbjct: 126 TRLPQPLSEAIKYFESLVRVSNV-IVAHNAEFDKKWFGLKKLPQIEK-PWICS--MDDIT 181

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +   +R  +  L   YG+ + +   H AL D   L++V+I+
Sbjct: 182 WPADRQLKTRPSVRDLALAYGVPVWN--AHRALTDCIYLAEVFIR 224


>gi|171742687|ref|ZP_02918494.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
 gi|171278301|gb|EDT45962.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
          Length = 328

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTGL+ ++ DR IEIG V +          +  +  +       A  +H I+   
Sbjct: 19  VVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLIRVH---RDIGAQWIHHISAVE 75

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128
           L   P F  I  E  D    +   ++AHN  FD  F+ +E +R+  D P++   ++ T+ 
Sbjct: 76  LIHAPEFEGIARELRDLLAGRV--FVAHNVAFDSKFLLSEYRRLGTDIPVNSHTMLCTMK 133

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R         L   C+ +G  I +   H AL D+H  + +  ++M
Sbjct: 134 LSRSL--IGVGSLADCCREFG--IDNEDAHSALSDAHATALLLGRLM 176


>gi|329946199|ref|ZP_08293812.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527797|gb|EGF54788.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 276

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 14/149 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEF 69
           V D+ETTGL    D I+E+  V      +  R++   + P  G    P   ++HG+  E 
Sbjct: 58  VVDLETTGLSPTTDSILEVALVLTDAAGRVERSWSTLIDPGAGVDVGPT--RIHGLVAEE 115

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLS 128
           L   P    +        +      +AHNA+FDVGF+   L    +  LD  +R+    +
Sbjct: 116 LSGAPGLDDVADLL--VADLAGRAVVAHNARFDVGFLTQALG--ARGLLDRGARVPRVCT 171

Query: 129 IARRKH----PSSRNDLNSLCKRYGITIS 153
           +   +H    PS R  L + C+  G+ I 
Sbjct: 172 MEWARHFMTTPSRR--LTTCCEVAGVEIG 198


>gi|302522606|ref|ZP_07274948.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
 gi|302431501|gb|EFL03317.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
          Length = 239

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 17/165 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI-TDEFL 70
           FD+ETTG D + DRI+   AV  LD S      + +L   G +   EA  +HGI T    
Sbjct: 11  FDLETTGTDIEQDRIV-TAAVIRLDASGAVAHTRTWLLDPGVEIPAEATAIHGIPTARAR 69

Query: 71  KDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPL------DPS 121
            D        +E  +    +       +  NA++D+  ++ E +R     L      +P+
Sbjct: 70  ADGAPARGAVAEITEALAAELRAGTPLVVMNARYDLSLLDRECRRHGVPALAEMLGTEPA 129

Query: 122 RIIDTLSI---ARRKHPSSRNDLNSLCKRYGITI--SHRSKHGAL 161
            +ID L +   A R    SR  L +LC  YG+ +  +H ++  AL
Sbjct: 130 PVIDPLVLDKHADRYRRGSRV-LAALCAHYGVRLDTAHDARSDAL 173


>gi|57652115|ref|YP_186779.1| exonuclease [Staphylococcus aureus subsp. aureus COL]
 gi|87160447|ref|YP_494527.1| exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195792|ref|YP_500602.1| hypothetical protein SAOUHSC_02110 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151222044|ref|YP_001332866.1| exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161510116|ref|YP_001575775.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141184|ref|ZP_03565677.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258451040|ref|ZP_05699076.1| exonuclease [Staphylococcus aureus A5948]
 gi|262049938|ref|ZP_06022798.1| hypothetical protein SAD30_1408 [Staphylococcus aureus D30]
 gi|262053185|ref|ZP_06025343.1| hypothetical protein SA930_1190 [Staphylococcus aureus 930918-3]
 gi|282923233|ref|ZP_06330914.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9765]
 gi|284024940|ref|ZP_06379338.1| exonuclease [Staphylococcus aureus subsp. aureus 132]
 gi|294849443|ref|ZP_06790185.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9754]
 gi|304379080|ref|ZP_07361827.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57286301|gb|AAW38395.1| exonuclease [Staphylococcus aureus subsp. aureus COL]
 gi|87126421|gb|ABD20935.1| exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87203350|gb|ABD31160.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374844|dbj|BAF68104.1| exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368925|gb|ABX29896.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257861282|gb|EEV84094.1| exonuclease [Staphylococcus aureus A5948]
 gi|259158912|gb|EEW43998.1| hypothetical protein SA930_1190 [Staphylococcus aureus 930918-3]
 gi|259161946|gb|EEW46528.1| hypothetical protein SAD30_1408 [Staphylococcus aureus D30]
 gi|282593144|gb|EFB98143.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9765]
 gi|294823580|gb|EFG40007.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9754]
 gi|302751766|gb|ADL65943.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304342315|gb|EFM08207.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315196235|gb|EFU26590.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320139726|gb|EFW31595.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320142357|gb|EFW34171.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329314570|gb|AEB88983.1| Exonuclease [Staphylococcus aureus subsp. aureus T0131]
 gi|329728665|gb|EGG65095.1| exonuclease [Staphylococcus aureus subsp. aureus 21189]
          Length = 184

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 9/166 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   + K   I  +G V+++D S+   TF   + P     S + +K+HGI  E 
Sbjct: 7   VALDFETA--NGKRTSICSVGMVKVID-SQITETFHTLVNPQDYF-SQQNIKIHGIQPED 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ P+F  +F     F    +   +AHNA FD+  ++  +Q I   P        +  +
Sbjct: 63  VENAPTFDYVFPYMMQFI--ADLPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQL 119

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+R   S R  L  + + Y   +     H AL D+   + +  +++
Sbjct: 120 AKRTVDSYRYGLKHMMEFY--QLDFHGHHDALNDAKACAMITFRLL 163


>gi|330967688|gb|EGH67948.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 203

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+  S   R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 3   RVAVIDFETTGISPSPGCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF    +   +AHNA FD  F + EL RI +          
Sbjct: 60  SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++ +ARR  P + N        Y    +    H A+ D+ + +++
Sbjct: 116 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 160


>gi|296273413|ref|YP_003656044.1| exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis
           DSM 7299]
 gi|296097587|gb|ADG93537.1| Exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis
           DSM 7299]
          Length = 252

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 18/165 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++FD ETTG + + DRII++GA+ ++D       +   LC +  +   EA+++H IT 
Sbjct: 3   KYVLFDTETTG-NQEEDRIIQLGAM-IVDAKAPVEVYDE-LCFSDVEIKLEAMEVHNITP 59

Query: 68  EFLKDKPSFSSI-FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           + +  KP  +   F +    +N  +   IAHN  FD+G I  E            +I+DT
Sbjct: 60  DMIIGKPEATQTKFYQKLQEYNNPSNYLIAHNINFDLGMIKKEGFE------SQYQILDT 113

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITI-----SHRSKHGALLDSH 165
           L  A+   P    + L  L  RY + I        +KH   + +H
Sbjct: 114 LRCAQHLFPELPYHRLQYL--RYALDIYMDEEEEAAKHNITIKAH 156


>gi|12044881|ref|NP_072691.1| DNA polymerase III PolC [Mycoplasma genitalium G37]
 gi|1352298|sp|P47277|DPO3_MYCGE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|3844641|gb|AAC71247.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           genitalium G37]
 gi|166078825|gb|ABY79443.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
           Mycoplasma genitalium JCVI-1.0]
          Length = 1451

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 9/165 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           ++FDIETTGL  + D +IE  A ++ + S+ +   Q FL  +  K  P+ + ++  ITDE
Sbjct: 417 VIFDIETTGLHGRYDDVIEFSARKIKNNSEIDHQ-QFFLKID--KPIPKTITEITKITDE 473

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
            L+          +  ++ ++     +AHN   FD+ F+  + ++ N  PL  + +IDTL
Sbjct: 474 MLEGGIDQQQGLEKIRNYLDD--CVMVAHNGINFDLPFLQTQFEKYNIKPL-TNPLIDTL 530

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            ++   +P  S + L+++C +  +       H A  D+  L  V+
Sbjct: 531 CLSWALNPLFSSHTLSNICSKLKLEFDDERLHRAEYDTEALKKVF 575


>gi|257784354|ref|YP_003179571.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
 gi|257472861|gb|ACV50980.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
          Length = 342

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGLD     IIEI A++++D  K    F   + P  R+    A  ++ IT+  
Sbjct: 79  VVVDLETTGLDVHYCEIIEIAALKVVD-GKITEEFSSLIHP-PREIPSGATAINHITNHM 136

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +K+ P+   +  +F  F   +    I HN+ ++D   +     R  +D L      DT  
Sbjct: 137 VKNAPTLDKVIPQFDTFV--KGFPLIGHNSLRYDAIVLEENFFR--RDFLCDYVWYDTYK 192

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +AR+        +N + KR  +   H   H AL D ++   +Y KM
Sbjct: 193 LARQILEPPYKLIN-IAKRLNVK-QHGKAHRALADCYMTYGIYEKM 236


>gi|219849043|ref|YP_002463476.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM
           9485]
 gi|219543302|gb|ACL25040.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM
           9485]
          Length = 934

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 15/164 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           +  D+ETTGL S  D IIE+ AV        +R F+  + P  R++ P +  +L GI   
Sbjct: 7   VAIDVETTGLQSGLDEIIEVAAVTFRGRDILDR-FERLVRP--RQSVPLKITRLTGIDPA 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ I ++   F    N   + H+  FD+  + A+    N+       I DT  
Sbjct: 64  ALAQAPRFNEIGADLARFIG--NRPIVGHSIGFDLMMLRAQGMNFNQP------IYDTFE 115

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +A    P + +  L++L  R G  I H   H AL D+ + + ++
Sbjct: 116 LATLLLPQATSYKLSALAARLG--IPHPDAHRALNDAEVAAQLF 157


>gi|300813469|ref|ZP_07093813.1| CRISPR-associated endoribonuclease Cas2 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512418|gb|EFK39574.1| CRISPR-associated endoribonuclease Cas2 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 297

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 88/178 (49%), Gaps = 15/178 (8%)

Query: 2   IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPE 58
           ++KN ++  +V DIET GLD   + IIEIGAV++      N  F+ F  L    +K +  
Sbjct: 122 VKKNNLKPYVVIDIETDGLDFDKNLIIEIGAVKV-----ENEKFEEFTRLIKYNKKLNST 176

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              L GI ++ L ++        S F  F   ++   + +N  +D+ F+N     +  +P
Sbjct: 177 IKDLTGIDEKLLNEEGIELKEALSLFKTFI--KDYPILGYNTSYDIKFLNKSFLDLGMEP 234

Query: 118 LDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  +++ D ++  +++     N  L +  + YG  I+ +  H AL DS L +++  K+
Sbjct: 235 I-ANKVYDLMTFVKKEKILLPNYKLQTALQAYG--INKQVPHRALEDSRLTAELSTKV 289


>gi|317047907|ref|YP_004115555.1| ribonuclease T [Pantoea sp. At-9b]
 gi|316949524|gb|ADU68999.1| ribonuclease T [Pantoea sp. At-9b]
          Length = 222

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A  L +D   +   + T    + P  G   +PEAL   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAATTLKMDDDGWLHCDETLHFHVEPFEGAILNPEALAFTG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114
           I         + +  +  +IF        + +   A  +AHNA FD  F+ A  +R+   
Sbjct: 80  IDPSNPLRGAVSEYDALHAIFKMVRKGMKDSHCNRAIIVAHNATFDHNFLMAAAERVGLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   CK  G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACKAAGMDFDSTQAHSALYDTEQTAILFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|78047167|ref|YP_363342.1| ribonuclease T [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325925832|ref|ZP_08187202.1| RNAse T [Xanthomonas perforans 91-118]
 gi|123585431|sp|Q3BV71|RNT_XANC5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|78035597|emb|CAJ23268.1| ribonuclease T [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325543767|gb|EGD15180.1| RNAse T [Xanthomonas perforans 91-118]
          Length = 213

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 17/181 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCPN-GRKNSPEALKLH 63
            +V D+ET G D     ++EI  V + +D         T    L P  G +  P++L++ 
Sbjct: 27  PVVVDVETGGFDWNKHALLEIACVPIEMDTDGRFFPGETASAHLVPAPGLEIDPKSLEIT 86

Query: 64  GITDE----FLK-DKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +    F K +K +   +F+        +  Q A  + HNA FD+ F+NA + R+  
Sbjct: 87  GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 146

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ K
Sbjct: 147 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCK 204

Query: 174 M 174
           +
Sbjct: 205 I 205


>gi|302333559|gb|ADL23752.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 184

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 9/166 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   + K   I  +G V+++D S+   TF   + P     S + +K+HGI  E 
Sbjct: 7   VALDFETA--NGKRTSICSVGMVKVID-SQITETFHTLVNPQDYF-SQQNIKVHGIQPED 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ P+F  +F     F  +     +AHNA FD+  ++  +Q I   P        +  +
Sbjct: 63  VENAPTFDYVFPYMMQFIAD--LPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQL 119

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+R   S R  L  + + Y +       H AL D+   + +  +++
Sbjct: 120 AKRTVDSYRYGLKHMMEFYQLDF--HGHHDALNDAKACAMITFRLL 163


>gi|124485750|ref|YP_001030366.1| hypothetical protein Mlab_0928 [Methanocorpusculum labreanum Z]
 gi|124363291|gb|ABN07099.1| Exonuclease, RNase T and DNA polymerase III [Methanocorpusculum
           labreanum Z]
          Length = 228

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 4/167 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGL+ K DRI E+ A++   Y   +   +    PN         ++ GIT E 
Sbjct: 2   LIVDTETTGLNPKIDRITELAAIKFDKYGNKSVMDEYISLPNDICYPENVQEMTGITPEI 61

Query: 70  --LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             LK  P     +       +      + HNA+FD+ FI   L R      +   +IDTL
Sbjct: 62  LELKGHPEEEIAWMFAMMLKSPGRVLLVTHNAQFDLRFIQEMLSRHRYVFPNGWGVIDTL 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++ R + P     L+     YG+    ++ H A+ D   L  V+  M
Sbjct: 122 TVFRDRKPQPHR-LSDAISYYGLD-GVKNSHRAIDDVVALCAVFDAM 166


>gi|260061966|ref|YP_003195046.1| DNA polymerase III subunit epsilon [Robiginitalea biformata
           HTCC2501]
 gi|88783528|gb|EAR14699.1| DNA polymerase III, epsilon subunit [Robiginitalea biformata
           HTCC2501]
          Length = 456

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 13/185 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG     +RI EI A+  +D  +   ++   + P G +       L GIT   +
Sbjct: 4   VVDIETTGNGIYGNRITEI-ALFNIDQGRIADSYSTLVNP-GCEIPAFITGLTGITTAMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLSI 129
           ++ P FS I  +  D F+     ++AH+  FD   +  E +R     LD  R  + T+ +
Sbjct: 62  RNAPDFSEIAPKI-DAFSSGRV-FVAHSVNFDYPIVRKEFERCG---LDFGRKKLCTVRL 116

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFGFK 186
           +RR  P  R+  L  LC+   I +S R  H A  D+   + + ++ M   GG     GF 
Sbjct: 117 SRRVFPGLRSYSLGKLCRSLEIPLSDR--HRAAGDARATALLLLRAMEQPGGQDTIAGFL 174

Query: 187 TNEDR 191
               R
Sbjct: 175 NARSR 179


>gi|282861901|ref|ZP_06270964.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
 gi|282562926|gb|EFB68465.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
          Length = 333

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 10/186 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTGL +++DRI+      L         +   + P   +  P  + +HG+T E L
Sbjct: 21  VVDVETTGL-ARDDRIVSAAVYRLDALGDVEDHWYTLVNP---ERDPGPVWIHGLTSEAL 76

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  + ++  +  + +    +AHNA FD   +  E  R         R+  T++++
Sbjct: 77  EGAPLFPEVAAQLSERLDGRVL--VAHNAAFDWSMLAREYARAAITAPVRQRLC-TIALS 133

Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           +  + P   + L SL   +G+ +  R+ H AL D+ +L++ +   +   ++        E
Sbjct: 134 KELRLPLPNHKLESLAAHFGV-VQQRAHH-ALDDARVLAEAFRPSLHAAARGGVRLPLLE 191

Query: 190 DRFFKE 195
            R   E
Sbjct: 192 CRPLTE 197


>gi|108802442|ref|YP_642638.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
 gi|119855268|ref|YP_935871.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
 gi|108772861|gb|ABG11582.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
 gi|119697985|gb|ABL95056.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
          Length = 193

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ET+G D    RI+ + A+ +     T       L P      P    +HG+T   
Sbjct: 8   VVVDVETSGFDPHTARILSVAALVVTTNGVTTTALHTLLDPG---VDPGPTDIHGLTTAM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L  +P ++ I ++     + +    +AHNA FD  F+ AE +R   + L  S ++ TL +
Sbjct: 65  LAGQPRYADIATDLAALLSGRI--LVAHNAAFDYAFLAAEARRAGAE-LPVSSVLCTLEL 121

Query: 130 ARRKH 134
           A R H
Sbjct: 122 AGRLH 126


>gi|294794415|ref|ZP_06759551.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           3_1_44]
 gi|294454745|gb|EFG23118.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           3_1_44]
          Length = 862

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 14/159 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+E+TG D+  DRII+I A+ + +  +    F+ F+ P       ++ ++HG +D +
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLEAFERFINPGIPVG--QSKEVHGFSDAY 552

Query: 70  LK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           L+    D  +    F EF      ++A  + HN  +DV     EL R N    +   I D
Sbjct: 553 LQEHGEDPATVLKAFKEF-----SKDAIIVGHNVNYDVTIFTNELARHNLGNPEFKAIYD 607

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163
           TL I RR +P+  N  L  L  ++   I H   H A+ D
Sbjct: 608 TLDIYRRFYPNLPNHKLGFLASKF--PIHHEPTHNAMDD 644


>gi|116493923|ref|YP_805657.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Lactobacillus casei ATCC 334]
 gi|116104073|gb|ABJ69215.1| 3'-5' exonuclease and CRISPR-associated protein cas2 [Lactobacillus
           casei ATCC 334]
          Length = 301

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 7/101 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGIT-D 67
           +  DIETTGLD++ D II IGAV+    ++T + F   + P  R+  P  + KL G++ +
Sbjct: 131 VALDIETTGLDAERDAIIAIGAVKGPSVNETEK-FTTLVNP--RRPLPSTVAKLTGLSAE 187

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           E + +  S S       DF    +   + +N +FD+GF++A
Sbjct: 188 ELVANGISLSEAVQALRDFTG--SLPLVGYNLRFDMGFLSA 226


>gi|217978759|ref|YP_002362906.1| DNA polymerase III subunit epsilon [Methylocella silvestris BL2]
 gi|217504135|gb|ACK51544.1| Exonuclease RNase T and DNA polymerase III [Methylocella silvestris
           BL2]
          Length = 222

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD ETTGLD + D II I AV++  +   T+  F+  + P  R N+ EA+K+H + + 
Sbjct: 33  VAFDCETTGLDPRRDDIITIAAVKIRGNRILTSERFEAVIRPEARMNA-EAIKVHRLREA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++       I  +F  F   +    I +  +FDV  I+  L  +    L P+ +I+  +
Sbjct: 92  DVEAGKRIEKIMPQFLHFIGGR--PLIGYYLEFDVRMIDKYLLGLLGIEL-PNPLIEVSN 148

Query: 129 I-ARRKH----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +   RK+    P +  DL+       + +    +H A  D+ + + +YIK+
Sbjct: 149 LYYERKYGDAPPGATIDLSFAAILKDLDLPMLDQHDAFNDALMTAMIYIKL 199


>gi|317011686|gb|ADU85433.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           SouthAfrica7]
          Length = 287

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ +  L GI  E   
Sbjct: 77  DLETTGSCPIKHEILEIGAVQVSGGKIINR-FETLV---KVKSVPDYISDLTGIAYEDTL 132

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL ++R
Sbjct: 133 NAPSVYEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSR 189

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221


>gi|322650293|gb|EFY46707.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
          Length = 205

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P    N  PEAL  +G
Sbjct: 10  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 69

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        E     A  +AHNA FD  F+ A   R  + 
Sbjct: 70  IDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAGRASLK 129

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   G+       H AL D+   + ++ ++
Sbjct: 130 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEI 187

Query: 175 M 175
           +
Sbjct: 188 V 188


>gi|315658260|ref|ZP_07911132.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           lugdunensis M23590]
 gi|315496589|gb|EFU84912.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           lugdunensis M23590]
          Length = 893

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG     D II+IG   + D  K   T+   +  +     P    L  I ++ L
Sbjct: 8   VVDLETTGNQLDYDEIIQIGITFVRD-QKIVGTYHSMINTDVEI-PPFIQALTSIEEDML 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K  P F  +  + +     +++ ++AHN  FD+ FI    +R N     P ++IDT+ + 
Sbjct: 66  KQAPYFHEVAEDVYK--QLKDSVFVAHNVSFDLTFIKKAFKR-NHIHFQPKKVIDTVELF 122

Query: 131 RRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           +   P+ ++  L+ L + + I +  +HR+   A   + L+
Sbjct: 123 KIAFPTDKSYQLSELAEAHHIPLDNAHRADEDATTTAKLM 162


>gi|126661959|ref|ZP_01732958.1| putative DNA polymerase III epsilon chain [Flavobacteria bacterium
           BAL38]
 gi|126625338|gb|EAZ96027.1| putative DNA polymerase III epsilon chain [Flavobacteria bacterium
           BAL38]
          Length = 256

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D   DRI+EI   ++  Y   N+  + +L        P+   +HGITDE + 
Sbjct: 12  FDLETTGIDVARDRIVEISIFKV--YPNGNKESKTWLVNPTIPIPPQTTAVHGITDEKVA 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           ++P+F  + ++  +   + +     ++ +FD+  +  EL R   D
Sbjct: 70  NEPTFKELATQVHNMIKDSDLAGF-NSDRFDIPLLAEELLRAEVD 113


>gi|15924884|ref|NP_372418.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927468|ref|NP_375001.1| hypothetical protein SA1710 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283564|ref|NP_646652.1| hypothetical protein MW1835 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49484135|ref|YP_041359.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486713|ref|YP_043934.1| putative exonuclease [Staphylococcus aureus subsp. aureus MSSA476]
 gi|82751547|ref|YP_417288.1| DNA polymerase III alpha chain [Staphylococcus aureus RF122]
 gi|148268366|ref|YP_001247309.1| exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394428|ref|YP_001317103.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156980210|ref|YP_001442469.1| hypothetical protein SAHV_1879 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253316903|ref|ZP_04840116.1| hypothetical protein SauraC_12304 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253729653|ref|ZP_04863818.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253734998|ref|ZP_04869163.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|255006681|ref|ZP_05145282.2| hypothetical protein SauraM_09445 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257426026|ref|ZP_05602448.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428699|ref|ZP_05605094.1| exonuclease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431309|ref|ZP_05607685.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257434027|ref|ZP_05610378.1| DNA polymerase subunit III alpha [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436931|ref|ZP_05612973.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus M876]
 gi|257793752|ref|ZP_05642731.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9781]
 gi|258408894|ref|ZP_05681176.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|258421002|ref|ZP_05683933.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9719]
 gi|258422971|ref|ZP_05685870.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9635]
 gi|258430026|ref|ZP_05688396.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9299]
 gi|258443456|ref|ZP_05691798.1| DNA polymerase subunit III alpha [Staphylococcus aureus A8115]
 gi|258445314|ref|ZP_05693505.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A6300]
 gi|258447878|ref|ZP_05696012.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A6224]
 gi|258453311|ref|ZP_05701296.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A5937]
 gi|269203547|ref|YP_003282816.1| exonuclease [Staphylococcus aureus subsp. aureus ED98]
 gi|282894561|ref|ZP_06302789.1| exonuclease [Staphylococcus aureus A8117]
 gi|282904525|ref|ZP_06312410.1| exonuclease [Staphylococcus aureus subsp. aureus C160]
 gi|282906298|ref|ZP_06314150.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282909214|ref|ZP_06317030.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911519|ref|ZP_06319319.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914692|ref|ZP_06322477.1| exonuclease [Staphylococcus aureus subsp. aureus M899]
 gi|282917241|ref|ZP_06324996.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus D139]
 gi|282919729|ref|ZP_06327461.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus C427]
 gi|282925133|ref|ZP_06332793.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus C101]
 gi|282928067|ref|ZP_06335674.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A10102]
 gi|283771044|ref|ZP_06343935.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus H19]
 gi|283958655|ref|ZP_06376101.1| exonuclease [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293507769|ref|ZP_06667611.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510786|ref|ZP_06669488.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus M809]
 gi|293539326|ref|ZP_06672005.1| exonuclease [Staphylococcus aureus subsp. aureus M1015]
 gi|295407274|ref|ZP_06817073.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A8819]
 gi|295428476|ref|ZP_06821103.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296276903|ref|ZP_06859410.1| exonuclease [Staphylococcus aureus subsp. aureus MR1]
 gi|297208922|ref|ZP_06925326.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297246200|ref|ZP_06930051.1| exonuclease [Staphylococcus aureus A8796]
 gi|297590053|ref|ZP_06948693.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|300913021|ref|ZP_07130459.1| exonuclease [Staphylococcus aureus subsp. aureus TCH70]
 gi|13701687|dbj|BAB42980.1| SA1710 [Staphylococcus aureus subsp. aureus N315]
 gi|14247666|dbj|BAB58056.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21205005|dbj|BAB95700.1| MW1835 [Staphylococcus aureus subsp. aureus MW2]
 gi|49242264|emb|CAG40971.1| putative exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49245156|emb|CAG43622.1| putative exonuclease [Staphylococcus aureus subsp. aureus MSSA476]
 gi|82657078|emb|CAI81515.1| probable DNA polymerase III alpha chain [Staphylococcus aureus
           RF122]
 gi|147741435|gb|ABQ49733.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946880|gb|ABR52816.1| Exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156722345|dbj|BAF78762.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253726594|gb|EES95323.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253727180|gb|EES95909.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257271169|gb|EEV03326.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274343|gb|EEV05855.1| exonuclease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257277958|gb|EEV08614.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257280953|gb|EEV11097.1| DNA polymerase subunit III alpha [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257283720|gb|EEV13845.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus M876]
 gi|257787724|gb|EEV26064.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9781]
 gi|257840341|gb|EEV64803.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|257842950|gb|EEV67368.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9719]
 gi|257846758|gb|EEV70773.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9635]
 gi|257849620|gb|EEV73588.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9299]
 gi|257851341|gb|EEV75281.1| DNA polymerase subunit III alpha [Staphylococcus aureus A8115]
 gi|257855832|gb|EEV78756.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A6300]
 gi|257858810|gb|EEV81679.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A6224]
 gi|257864519|gb|EEV87262.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A5937]
 gi|262075837|gb|ACY11810.1| exonuclease [Staphylococcus aureus subsp. aureus ED98]
 gi|282313091|gb|EFB43489.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316367|gb|EFB46744.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus C427]
 gi|282318868|gb|EFB49223.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus D139]
 gi|282321406|gb|EFB51732.1| exonuclease [Staphylococcus aureus subsp. aureus M899]
 gi|282324528|gb|EFB54840.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282326782|gb|EFB57079.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330495|gb|EFB60012.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282590131|gb|EFB95212.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A10102]
 gi|282595081|gb|EFC00048.1| exonuclease [Staphylococcus aureus subsp. aureus C160]
 gi|282763048|gb|EFC03180.1| exonuclease [Staphylococcus aureus A8117]
 gi|283459638|gb|EFC06729.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus H19]
 gi|283471164|emb|CAQ50375.1| exonuclease [Staphylococcus aureus subsp. aureus ST398]
 gi|283789695|gb|EFC28517.1| exonuclease [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285817574|gb|ADC38061.1| DNA polymerase III polC-type [Staphylococcus aureus 04-02981]
 gi|290919861|gb|EFD96930.1| exonuclease [Staphylococcus aureus subsp. aureus M1015]
 gi|291094832|gb|EFE25100.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466417|gb|EFF08941.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus M809]
 gi|294967849|gb|EFG43879.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A8819]
 gi|295127458|gb|EFG57097.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296886412|gb|EFH25341.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297176907|gb|EFH36164.1| exonuclease [Staphylococcus aureus A8796]
 gi|297577181|gb|EFH95895.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|298695233|gb|ADI98455.1| probable DNA polymerase III alpha chain [Staphylococcus aureus
           subsp. aureus ED133]
 gi|300885799|gb|EFK81006.1| exonuclease [Staphylococcus aureus subsp. aureus TCH70]
 gi|312437640|gb|ADQ76711.1| exonuclease [Staphylococcus aureus subsp. aureus TCH60]
 gi|312830266|emb|CBX35108.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129297|gb|EFT85291.1| hypothetical protein CGSSa03_08545 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315193423|gb|EFU23820.1| hypothetical protein CGSSa00_04826 [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|329724805|gb|EGG61309.1| exonuclease [Staphylococcus aureus subsp. aureus 21172]
 gi|329731424|gb|EGG67787.1| exonuclease [Staphylococcus aureus subsp. aureus 21193]
          Length = 184

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 9/166 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   + K   I  +G V+++D S+   TF   + P     S + +K+HGI  E 
Sbjct: 7   VALDFETA--NGKRTSICSVGMVKVID-SQITETFHTLVNPQDYF-SQQNIKVHGIQPED 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ P+F  +F     F    +   +AHNA FD+  ++  +Q I   P        +  +
Sbjct: 63  VENAPTFDYVFPYMMQFI--ADLPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQL 119

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+R   S R  L  + + Y +       H AL D+   + +  +++
Sbjct: 120 AKRTVDSYRYGLKHMMEFYQLDF--HGHHDALNDAKACAMITFRLL 163


>gi|294626315|ref|ZP_06704917.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294665592|ref|ZP_06730872.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292599316|gb|EFF43451.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292604641|gb|EFF48012.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 213

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 19/181 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-----QVFLCPN-GRKNSPEALKLH 63
           +V D+ET G D     ++EI  V + +     R F        L P  G +  P++L++ 
Sbjct: 28  VVVDVETGGFDWNKHALLEIACVPI-EMGADGRFFPGETASAHLVPAPGLEIDPKSLEIT 86

Query: 64  GITDE----FLK-DKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +    F K +K +   +F+        +  Q A  + HNA FD+ F+NA + R+  
Sbjct: 87  GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 146

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ K
Sbjct: 147 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCK 204

Query: 174 M 174
           +
Sbjct: 205 I 205


>gi|227111797|ref|ZP_03825453.1| ribonuclease T [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 223

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++E+ AV L +D   + + + T    + P  G    P AL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +   IF        +Q    A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAAERCSLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D++  + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|15612503|ref|NP_224156.1| DNA polymerase III subunit epsilon [Helicobacter pylori J99]
 gi|4156060|gb|AAD07016.1| DNA POLYMERASE III [Helicobacter pylori J99]
          Length = 323

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GIT E   
Sbjct: 113 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 168

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 169 NAPSAHEALQELRIFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 225

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 226 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 257


>gi|47094224|ref|ZP_00231936.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858]
 gi|47017396|gb|EAL08217.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858]
          Length = 618

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R IV D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  ++ L GI
Sbjct: 5   RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNP--EKPIPAFIQELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +D
Sbjct: 62  SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           T+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEF--NLGHDKPHRADSDAEVTAD 161


>gi|254386752|ref|ZP_05002044.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
 gi|194345589|gb|EDX26555.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
          Length = 246

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 27/162 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD-- 67
           + FD+ETTG +    RI+    VE+       R  + +L   G     +A  +HGI+   
Sbjct: 10  VGFDLETTGTEPGESRIVTAAVVEVRGGEVRER--RGWLADPGIPIPEQASAIHGISTAR 67

Query: 68  EFLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---------R 112
              + +P        ++   E W     + A  +A+NA FD+  ++AEL          R
Sbjct: 68  AVAEGRPVREVAQEVAAALVEHW----RRGAVVVAYNAAFDLTLLSAELARHGLPSLSDR 123

Query: 113 INKDPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
           +   P  P  ++D L+I R   ++   +  L ++C  YG+T+
Sbjct: 124 LGGAPTGP--VVDPLTIDRAVDRYRRGKRTLEAVCGVYGVTL 163


>gi|260598318|ref|YP_003210889.1| exodeoxyribonuclease X [Cronobacter turicensis z3032]
 gi|260217495|emb|CBA31655.1| Exodeoxyribonuclease 10 [Cronobacter turicensis z3032]
          Length = 220

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      ++E+ +V+++D +  N      + P+ R  S +A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---VVEVASVDIIDGAIVN-PMSDLVRPD-RPISHQAMAIHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   +        + W +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPYIEDVIPRY------HGSPWYVAHNASFDRKVL----------PEMPGEWICTVKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           ARR  P  R     L K   + +   +    H AL D ++ + + +++M
Sbjct: 103 ARRLWPGIRYSNMGLYKSLKLQVETPAGLHHHRALFDCYITAALLLEIM 151


>gi|271970236|ref|YP_003344432.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270513411|gb|ACZ91689.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 189

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 11/144 (7%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + D+ETTG   +K DRI EI  V L     T   +   + P   +    A+ +HGIT+  
Sbjct: 1   MVDVETTGFSPAKGDRICEIALVSLDADGTTVDEWHSLVDP---RRGTGAVHVHGITEAM 57

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P    +  E W     +    +AHN  FD+ F+     ++       +  + T  +
Sbjct: 58  VEGAPVIEEVLDEVWQRIAGRVL--VAHNVSFDLRFL-----KVLPGSHWLTEALCTQQL 110

Query: 130 ARRKHPSSRNDLNSLCKRYGITIS 153
           A    P  +  L + C+R GI  S
Sbjct: 111 APDLIPGGKWTLGACCQRAGIPFS 134


>gi|150007345|ref|YP_001302088.1| DNA polymerase III subunit epsilon [Parabacteroides distasonis ATCC
           8503]
 gi|255014024|ref|ZP_05286150.1| DNA polymerase III epsilon chain [Bacteroides sp. 2_1_7]
 gi|256839636|ref|ZP_05545145.1| DNA polymerase subunit III epsilon [Parabacteroides sp. D13]
 gi|262382080|ref|ZP_06075218.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_33B]
 gi|298375333|ref|ZP_06985290.1| exonuclease [Bacteroides sp. 3_1_19]
 gi|301310653|ref|ZP_07216592.1| exonuclease [Bacteroides sp. 20_3]
 gi|149935769|gb|ABR42466.1| DNA polymerase III epsilon chain [Parabacteroides distasonis ATCC
           8503]
 gi|256738566|gb|EEU51891.1| DNA polymerase subunit III epsilon [Parabacteroides sp. D13]
 gi|262297257|gb|EEY85187.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_33B]
 gi|298267833|gb|EFI09489.1| exonuclease [Bacteroides sp. 3_1_19]
 gi|300832227|gb|EFK62858.1| exonuclease [Bacteroides sp. 20_3]
          Length = 256

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 14/126 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + FD+ETTG++   DRI+EI  V++     + +KT R     + P G    PE+  +HGI
Sbjct: 10  VFFDLETTGINIVKDRIVEISYVKVFPNGKEETKTRR-----INP-GMPIPPESTAIHGI 63

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRI 123
           TDE +KD P+F  I          +  +   +N+ +FD+  +  E  R   D  L+  + 
Sbjct: 64  TDEDVKDCPTFKEIAKSLAT--QIEGCDLAGYNSNRFDIPMLAEEFLRAGVDIDLNRRKF 121

Query: 124 IDTLSI 129
           ID  +I
Sbjct: 122 IDVQTI 127


>gi|325142622|gb|EGC65013.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           961-5945]
          Length = 405

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 8/121 (6%)

Query: 51  NGRKNSPE-ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           N +K  P+  + L GI+D  + D P F+ I  E +     +    +AHN++FD  F+  E
Sbjct: 3   NPQKPIPQFVVGLTGISDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHE 60

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             R+      P  ++ ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L 
Sbjct: 61  FHRVGIGFSSP--VLCSVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALC 116

Query: 169 D 169
           D
Sbjct: 117 D 117


>gi|254391300|ref|ZP_05006504.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|326440213|ref|ZP_08214947.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|197704991|gb|EDY50803.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 241

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D +NDRI+   AV + D +        +L   G    P A ++HG+TD+ +
Sbjct: 11  AFDTETTGVDVENDRIVA-AAVVVQDMAGGRPRITRWLINPGIPVPPGATEVHGLTDDHV 69

Query: 71  KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLD------P 120
           +    + + +  E         A     +  NA FD+  ++ EL+R    PL       P
Sbjct: 70  QRNGRWPAPVLEEVAKTVAGHCAAGRPLVVMNAPFDLTILDRELRRHRATPLSRYLEHTP 129

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
             ++D   + ++  ++   R  L  LC +Y + +
Sbjct: 130 LTVLDPRVLDKQLDRYRKGRRSLVDLCSQYEVVL 163


>gi|15645997|ref|NP_208178.1| DNA polymerase III subunit epsilon [Helicobacter pylori 26695]
 gi|2314554|gb|AAD08426.1| DNA polymerase III epsilon subunit (dnaQ) [Helicobacter pylori
           26695]
          Length = 350

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GIT E   
Sbjct: 113 DLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 168

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 169 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 225

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 226 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 257


>gi|322615086|gb|EFY12009.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619925|gb|EFY16798.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322622237|gb|EFY19082.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627759|gb|EFY24549.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632896|gb|EFY29640.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322636613|gb|EFY33316.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322641194|gb|EFY37836.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644871|gb|EFY41404.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322655865|gb|EFY52167.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660193|gb|EFY56432.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665242|gb|EFY61430.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669499|gb|EFY65647.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673425|gb|EFY69527.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322677353|gb|EFY73417.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322679984|gb|EFY76023.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687456|gb|EFY83428.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323194090|gb|EFZ79289.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198572|gb|EFZ83673.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202899|gb|EFZ87934.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208618|gb|EFZ93556.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211154|gb|EFZ96001.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217595|gb|EGA02310.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323218944|gb|EGA03454.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227078|gb|EGA11258.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229397|gb|EGA13520.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236896|gb|EGA20968.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240342|gb|EGA24386.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323242669|gb|EGA26690.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323250235|gb|EGA34126.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252445|gb|EGA36292.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323256463|gb|EGA40196.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323261433|gb|EGA45016.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323267209|gb|EGA50694.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323272728|gb|EGA56133.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 215

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P    N  PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        E     A  +AHNA FD  F+ A   R  + 
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAGRASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|326444059|ref|ZP_08218793.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 285

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 21/159 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68
           + FD+ETTG D +  RI+    VE        R  + +L   G +   +A  +HGIT E 
Sbjct: 54  VGFDLETTGTDPREARIVTAAVVEARAGEPVRR--RTWLADPGVRIPAQASAIHGITSER 111

Query: 69  -FLKDKPS---FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---------RINK 115
              + +P+      + +E   ++  +    +A+NA FD+  + AE++         R+  
Sbjct: 112 AAAEGRPAREVADEVAAELCGYWA-RGVPVVAYNAAFDLSLLAAEIRRYGLPSLSDRLGG 170

Query: 116 DPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
            P  P  +ID  +I R   ++   +  L ++   YG+ +
Sbjct: 171 RPTGP--VIDPYTIDRAVDRYRKGKRTLEAVSAEYGVPL 207


>gi|149927335|ref|ZP_01915591.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
 gi|149824049|gb|EDM83272.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
          Length = 248

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+ + D II IGAV L+         + ++     K   + + +HGIT   
Sbjct: 56  LAIDFETTGLNPEYDDIISIGAVPLMSNRIMLGQSRYWILKPAAKLRSDTIPIHGITHSD 115

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTLS 128
           + + P    +  E     + + A  +AH A  +  F++  LQ R+ +  + P  +IDT+ 
Sbjct: 116 IANAPDLIDVLPELLKMMSGKLA--VAHCAAIETRFLDTALQYRVGEGIVFP--VIDTMG 171

Query: 129 IAR 131
           I R
Sbjct: 172 IER 174


>gi|309797899|ref|ZP_07692280.1| exonuclease [Escherichia coli MS 145-7]
 gi|308118507|gb|EFO55769.1| exonuclease [Escherichia coli MS 145-7]
          Length = 182

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 73/164 (44%), Gaps = 6/164 (3%)

Query: 13  DIETTGLD-SKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           DIE+TGLD     +IIEI  V+  ++      +F +   P  R   P+A  +HGI+ E L
Sbjct: 7   DIESTGLDFLSGHKIIEIAMVKYEIETQTMVDSFVMRFNPR-RSIDPKAQAVHGISLEDL 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSI 129
             +P  +   +     +   +  WIAHN + FD+ FI  EL+      L    +IDTL  
Sbjct: 66  AAEPLLAD-HASSVASYLSSSDIWIAHNGEAFDIPFIRHELKSYGFS-LPDIPLIDTLFS 123

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                   R  L  L    G    H   H AL D++L+   + K
Sbjct: 124 LWATEDGKRPRLEELAFSLGFIYDHAKAHSALYDTNLMMQCFFK 167


>gi|261838819|gb|ACX98585.1| DNA polymerase III epsilon subunit [Helicobacter pylori 51]
          Length = 323

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GIT E   
Sbjct: 113 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 168

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 169 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 225

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 226 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 257


>gi|332306913|ref|YP_004434764.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174242|gb|AEE23496.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 251

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 5/124 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+ K D I+ IG V +          Q ++     +   +++ +HGIT   
Sbjct: 61  VALDFETTGLNPKTDSIVSIGLVAMTTQRIRCAQAQHWIIKPDTELKSKSVVIHGITHSD 120

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDTLS 128
           + D P+F+ +  E  +    Q    +AH+   +  F+N+ + Q I ++ + P   IDT+S
Sbjct: 121 VADAPTFNRVLDELLEHL--QGKVVVAHHKDIESRFLNSAMKQYIGEEIVFPC--IDTMS 176

Query: 129 IARR 132
           +  R
Sbjct: 177 LEAR 180


>gi|330895532|gb|EGH27842.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 203

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+   +  R  EI AV ++   +    FQ  +  N     P  ++ L GI
Sbjct: 3   RIAVIDFETTGISPGHSCRATEI-AVVIMAQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF    +   +AHNA FD  F + EL RI +          
Sbjct: 60  SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIERT--REQSFAC 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +L +ARR  P + N       RY         H A+ D+ + +++
Sbjct: 116 SLLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANL 160


>gi|308234071|ref|ZP_07664808.1| DNA polymerase III, epsilon subunit [Atopobium vaginae DSM 15829]
          Length = 1008

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 10/149 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL  KND++ +I AV+L + S  +  F  F+ P+ R       KL  I    
Sbjct: 51  VALDTETTGLSHKNDQLTQIAAVKLEEGSVADE-FTTFVNPS-RPIPHNIEKLTNIYSVD 108

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+  +  +   DF        +AHNA FD  FI A       D       IDTL++
Sbjct: 109 VEHAPTPQTAVARLADFVELDPI--LAHNASFDRAFIEAA----QNDTCVSDTWIDTLAL 162

Query: 130 ARRKHPS-SRNDLNSLCKRYGI-TISHRS 156
           +R   P+ + + L  L   +G  +++HR+
Sbjct: 163 SRIAFPALTSHKLQDLAYIFGCESVTHRA 191


>gi|70732717|ref|YP_262480.1| exonuclease [Pseudomonas fluorescens Pf-5]
 gi|68347016|gb|AAY94622.1| exonuclease [Pseudomonas fluorescens Pf-5]
          Length = 203

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 11/170 (6%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65
           R  V D ETTG+  S + R  EI AV +L+  +    +Q  +  N     P  + +L GI
Sbjct: 3   RIAVIDFETTGISPSSSCRATEI-AVVILEQGRIVERYQSLM--NAGVRVPAFIEQLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  L+  P    + +E  +F        +AHNA FD  F + EL RI +  L       
Sbjct: 60  SNAMLRSAPPAEQVMNEVNEFVG--ITPLLAHNAAFDQKFWDFELGRIKRTRLQ--NFAC 115

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +L +ARR  P++ N  L +L    G+  + ++ H A+ D+ + +++   +
Sbjct: 116 SLLLARRLMPAAPNHKLGTLTSFAGLPHTGQA-HRAMADAEMAANLVAHL 164


>gi|226943525|ref|YP_002798598.1| ribonuclease T [Azotobacter vinelandii DJ]
 gi|226718452|gb|ACO77623.1| ribonuclease T [Azotobacter vinelandii DJ]
          Length = 202

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 23/184 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQV--FLCPNGRKNSPEALK 61
           +V D+ET G +S  D ++EI A+ +      L + + +  F+V  F    G      AL+
Sbjct: 11  VVVDVETGGFNSATDALLEIAAITIGMDEQGLLFPEHSHFFRVEPF---EGANIEAAALE 67

Query: 62  LHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQR- 112
             GI  D  L+   S      E +    +       + A  + HN+ FD+ F+NA + R 
Sbjct: 68  FTGIKLDHPLRMAVSEEHALQEIFRGVRKAVKSHGCKRAILVGHNSSFDLAFLNAAVARC 127

Query: 113 -INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            I ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++
Sbjct: 128 DIKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQSAGIEFDGREAHSARYDTEKTAELF 185

Query: 172 IKMM 175
             ++
Sbjct: 186 CGIV 189


>gi|217963949|ref|YP_002349627.1| DnaQ family exonuclease/DinG family helicase [Listeria
           monocytogenes HCC23]
 gi|217333219|gb|ACK39013.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           monocytogenes HCC23]
 gi|307571481|emb|CAR84660.1| ATP-dependent helicase [Listeria monocytogenes L99]
          Length = 928

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 11/165 (6%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R IV D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  ++ L GI
Sbjct: 5   RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +K+ P F  +          ++  ++AHN  FD  F+  E+ R     L   + +D
Sbjct: 62  SPKDVKNAPLFEDVAPIIAGLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           T+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEF--NLGHDKPHRADSDAEVTAD 161


>gi|328943468|ref|ZP_08240933.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829]
 gi|327491437|gb|EGF23211.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829]
          Length = 1011

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 10/149 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL  KND++ +I AV+L + S  +  F  F+ P+ R       KL  I    
Sbjct: 54  VALDTETTGLSHKNDQLTQIAAVKLEEGSVADE-FTTFVNPS-RPIPHNIEKLTNIYSVD 111

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+  +  +   DF        +AHNA FD  FI A       D       IDTL++
Sbjct: 112 VEHAPTPQTAVARLADFVELDPI--LAHNASFDRAFIEAA----QNDTCVSDTWIDTLAL 165

Query: 130 ARRKHPS-SRNDLNSLCKRYGI-TISHRS 156
           +R   P+ + + L  L   +G  +++HR+
Sbjct: 166 SRIAFPALTSHKLQDLAYIFGCESVTHRA 194


>gi|154492230|ref|ZP_02031856.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC
           43184]
 gi|154087455|gb|EDN86500.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC
           43184]
          Length = 256

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 14/126 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + FD+ETTG++   DRI+EI  V++     + SKT R       P      PE+  +HGI
Sbjct: 10  VFFDLETTGINIVKDRIVEISFVKVYPNGKEESKTRRINPEMPIP------PESTAIHGI 63

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRI 123
           TDE +KD P+F  I          +  +   +N+ +FD+  +  E  R   D  L+  + 
Sbjct: 64  TDEDVKDCPTFKEIAKSLAAQI--EGCDLAGYNSNRFDIPLLAEEFLRAGVDIDLNKRKF 121

Query: 124 IDTLSI 129
           +D  +I
Sbjct: 122 VDVQTI 127


>gi|260913082|ref|ZP_05919564.1| ribonuclease T [Pasteurella dagmatis ATCC 43325]
 gi|260632669|gb|EEX50838.1| ribonuclease T [Pasteurella dagmatis ATCC 43325]
          Length = 221

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 90/192 (46%), Gaps = 20/192 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGR 53
           + KN+ R    ++ D+ET G ++K D ++E+ A+ + +D     + ++     + P  G 
Sbjct: 17  LLKNRFRGYFPVIIDVETAGFNAKTDALLELAAITVKMDDNGLLQPDQKCHFHIEPFEGA 76

Query: 54  KNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGF 105
             +PE+L+ +GI     L+   S +   +E +    +       Q +  +AHNA FD  F
Sbjct: 77  NINPESLQFNGIDIHNPLRGAVSETHAITELFRMVRKGQKDADCQRSIIVAHNAVFDQSF 136

Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           I A  +R  + ++P  P  + DT +++       +  L   C+   I    +  H AL D
Sbjct: 137 IMAAAERTGVKRNPFHPFGMFDTATLSGFM--LGQTVLVKACQVAKIPFDGKQAHSALYD 194

Query: 164 SHLLSDVYIKMM 175
           +   ++++  M+
Sbjct: 195 TERTTELFCYMV 206


>gi|238022741|ref|ZP_04603167.1| hypothetical protein GCWU000324_02650 [Kingella oralis ATCC 51147]
 gi|237865944|gb|EEP67080.1| hypothetical protein GCWU000324_02650 [Kingella oralis ATCC 51147]
          Length = 464

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 90/175 (51%), Gaps = 11/175 (6%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R   +  ++ D+ETTG     DRI E+  +       T    Q  + PN    S     L
Sbjct: 18  RTLPIPVVILDLETTGGHFYADRITELAFLHFWQGKIT--AVQQLVQPN-MPISGFVRDL 74

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI+DE L+ +P+F+    +       + +  IAHN++FD  F+  E +R N      + 
Sbjct: 75  TGISDEMLQGQPTFAQFAPQVLPLL--RGSLLIAHNSRFDYTFLRHECRR-NGFAFATAG 131

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +  ++ ++R+ +P   +++L+S+ +R+G+ ++  S+H A+ D   +++ Y+++ +
Sbjct: 132 LC-SVQLSRKLYPEFFKHNLDSIIERHGLAVA--SRHRAMSDVLAVAE-YLQLAL 182


>gi|167624484|ref|YP_001674778.1| exonuclease RNase T and DNA polymerase III [Shewanella halifaxensis
           HAW-EB4]
 gi|167354506|gb|ABZ77119.1| Exonuclease RNase T and DNA polymerase III [Shewanella halifaxensis
           HAW-EB4]
          Length = 205

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 21/184 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +++  +  D+E TGLD + D+I+ IG +     LL  +K+     + +  +G     ++ 
Sbjct: 18  SQLPLMAVDLEMTGLDCQFDQILSIGLIPIHNGLLQVAKSQH---LLVSIDGSVG--DSA 72

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI D  L    S     +  W     +    +AH+A  D+ F+  E+QR     +  
Sbjct: 73  TIHGILDNQLTQAVSAKQAMA--WFLEQSKGHVLVAHHAPLDLCFLKTEIQRCYGQTMQF 130

Query: 121 SRIIDTLSIAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              IDT+++ +    R+H   +     L++  +RYG+ +   + H A +D+    ++ + 
Sbjct: 131 VA-IDTMAVEKKRLLRQHDVIKEGTLRLDACRQRYGLPV--YTAHNAAVDALACGELLLA 187

Query: 174 MMVG 177
            M G
Sbjct: 188 QMAG 191


>gi|260063517|ref|YP_003196597.1| putative DNA polymerase III subunit epsilon [Robiginitalea
           biformata HTCC2501]
 gi|88782961|gb|EAR14135.1| putative DNA polymerase III epsilon chain [Robiginitalea biformata
           HTCC2501]
          Length = 258

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG +   DRI+E+  +++  +   N+  + +L   G     EA  +HGITDE + 
Sbjct: 12  FDLETTGTNIATDRIVELAILKV--FPNGNKESKTWLVNPGVPIPEEASAIHGITDEKVA 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
            +P+F  +  E +     Q  +    N+ +FD+  +  EL R   D
Sbjct: 70  GEPTFRELAREVYQMI--QGCDLAGFNSNRFDIPLLAEELLRAGVD 113


>gi|331701662|ref|YP_004398621.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri
           NRRL B-30929]
 gi|329129005|gb|AEB73558.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri
           NRRL B-30929]
          Length = 177

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 12/127 (9%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +HGI +  + D P+F  ++      F+  N   IAHNA FD   +   L+R    P  
Sbjct: 50  INVHGIHERDVVDAPTFPEVWRHIQPLFS-ANKLVIAHNASFDNSVLKRTLERYEVQP-- 106

Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           P  + +DTL  +++ +P+  N  LN+LC +  I + H   H AL DS   +++ +     
Sbjct: 107 PHYLTLDTLRTSKQFYPTLENHKLNTLCDKLNIVLKHH--HNALDDSVACANILL----- 159

Query: 178 GSQINFG 184
             Q  FG
Sbjct: 160 TEQAQFG 166


>gi|183598873|ref|ZP_02960366.1| hypothetical protein PROSTU_02308 [Providencia stuartii ATCC 25827]
 gi|188021081|gb|EDU59121.1| hypothetical protein PROSTU_02308 [Providencia stuartii ATCC 25827]
          Length = 213

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    P AL   G
Sbjct: 20  VVIDVETGGFNAKTDGLLEIAAITLKMDKDGWLSPDETLHFHVEPFEGANLEPAALAFTG 79

Query: 65  I--TDEFLKDKPSFSSIFSEF------WDFFNEQNAEWIAHNAKFDVGFI--NAELQRIN 114
           I  T+        + ++ + F          +   A  +AHNA FD  F+   AE   + 
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKMVRKGMKATDCNRAIIVAHNATFDHSFVMNAAERAGLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI    +  HGAL D++  + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLVF--GQTILAKACVAAGIPFDGKQAHGALYDTNRTALLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|146299725|ref|YP_001194316.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
 gi|146154143|gb|ABQ04997.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
          Length = 459

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           KN+   IV DIETTG ++   RI EI A+ + D       ++  + P  +   P    L 
Sbjct: 2   KNQEYAIV-DIETTGGNASGSRITEI-AIIIHDGKNVLDRYETLVNPE-QDIPPSIFGLT 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI +E + + P F  I  +  +   ++   ++AHN  FD  F++ +L++        ++ 
Sbjct: 59  GINNEMVANAPIFDDISEKVLEMLTDR--IFVAHNVNFDYSFVHHQLEQAGFKW--SAKK 114

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           + T+  AR+  P      L +LC    I++ +R + G   D+
Sbjct: 115 LCTVRAARKIKPGLGSYSLGNLCNSLNISLENRHRAGGDADA 156


>gi|313156971|gb|EFR56403.1| exonuclease [Alistipes sp. HGB5]
          Length = 255

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 9/110 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGITD 67
           I FD+ETTG+D+  DRI+EI   +++ D  +  +T ++    N   + P EA  +HGITD
Sbjct: 10  IFFDLETTGVDTAKDRIVEISMAKIMPDGEEIVKTRKL----NPEMHIPEEATAIHGITD 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           E +KD P+F+ +      F   +  ++   N+ +FD+  +  E  R   D
Sbjct: 66  EDVKDCPTFAQVAKSLEQFI--RGCDFGGFNSNRFDLPVLVEEFLRAGVD 113


>gi|168492961|ref|ZP_02717104.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC3059-06]
 gi|183577104|gb|EDT97632.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC3059-06]
          Length = 816

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    +N  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--ENGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|241767097|ref|ZP_04764869.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
 gi|241362329|gb|EER58323.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
          Length = 153

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 8/142 (5%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+   +  R  E+ A+ LLD       FQ  L   G    P   +L GIT+  
Sbjct: 7   VIDFETTGMGPGQGARATEV-AIVLLDNGVVVDRFQS-LMKTGAWIPPFITQLTGITNAM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  +++  E   F    NA  +AHNA FD  F  AEL         P     T+ +
Sbjct: 65  VNAAPQAAAVMREAARFVG--NAPMVAHNAAFDRKFWQAELALAGLP--APHPFACTVLL 120

Query: 130 ARRKHP-SSRNDLNSLCKRYGI 150
           +RR +P +  + L  L   +G+
Sbjct: 121 SRRLYPQAPSHKLGMLVDYHGL 142


>gi|255615473|ref|XP_002539676.1| DNA polymerase III epsilon subunit, putative [Ricinus communis]
 gi|223503630|gb|EEF22707.1| DNA polymerase III epsilon subunit, putative [Ricinus communis]
          Length = 205

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 13/107 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-------TNRTFQVFLCPNGRKNSPEA 59
           +R ++ D ETTG D   D++IE+G V   DY          + TF     P G    PE+
Sbjct: 2   LRAVILDTETTGTDYVQDKVIELGMVA-FDYCPQTGMIGDVHGTFNQLEDP-GFPIPPES 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
            K+H ITDE +  K    SI  E  + F +  +  IAHN++FD  F+
Sbjct: 60  TKVHHITDEMVAGK----SINDEEVEAFIKPASIIIAHNSRFDRRFV 102


>gi|295693537|ref|YP_003602147.1| DNA polymerase iii [Lactobacillus crispatus ST1]
 gi|295031643|emb|CBL51122.1| DNA polymerase III [Lactobacillus crispatus ST1]
          Length = 318

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 11/158 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--KLHGITDE 68
           + DIETTGL    DRI E+G V++ +    ++     L    + NS  A   KL+GIT+E
Sbjct: 35  MLDIETTGLYPYRDRITELGGVKVRNGQIVDQYTN--LVKFSKNNSVPAFITKLNGITEE 92

Query: 69  -FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +K+         EF +F  +     I +N  FD+ F+    Q+     LD +  +D L
Sbjct: 93  QIVKEGIPAEQAIREFREFIGDD--VIIGYNVNFDLNFLYDLSQKYGLPVLD-NDYVDVL 149

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164
            +AR  +P  R N L    +R G  I+    H  L DS
Sbjct: 150 RLARTYYPRERHNRLLDCMQRAG--IAQVEAHHGLQDS 185


>gi|311895419|dbj|BAJ27827.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 235

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 20/164 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG D +  RI+    V+ L       T   +L   G     EA  +HGITD   +
Sbjct: 11  FDLETTGTDPEESRIVTAAVVDTLGGGVQGAT--TWLLDPGVPIPDEAAAIHGITDAEAR 68

Query: 72  --DKPSFSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRIN--------KDPL 118
              +P+  +I  E      E+ A     +A NA FD+  ++AEL+R            P+
Sbjct: 69  ANGRPAAEAI-EEIARTLAERLAAGRPVVAFNAPFDLSLLDAELRRHGLPTLADRLGGPV 127

Query: 119 DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGA 160
            P  ++D + + R   K+      L  +C+ YG+ +    + G+
Sbjct: 128 AP--VVDAMVVDRALDKYRKGSRTLQRVCEVYGVELRDAHEAGS 169


>gi|301167502|emb|CBW27085.1| putative exonuclease [Bacteriovorax marinus SJ]
          Length = 963

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 5/107 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V DIETTG+D   D+II++G ++  + +   R +   +  +G K S    KL GI  
Sbjct: 7   RWAVIDIETTGIDPSYDQIIDVGYLQ-FEGTTLVRKYSSLVQYDG-KLSQFIKKLTGIDS 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           + L + PS+  +  E  D F       IAHNA+F+  F++    RI+
Sbjct: 65  KMLINAPSWQVVSPEVMDVFGHH---LIAHNAEFERSFLSDHFARID 108


>gi|294815713|ref|ZP_06774356.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|294328312|gb|EFG09955.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 251

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 21/159 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68
           + FD+ETTG D +  RI+    VE        R  + +L   G +   +A  +HGIT E 
Sbjct: 20  VGFDLETTGTDPREARIVTAAVVEARAGEPVRR--RTWLADPGVRIPAQASAIHGITSER 77

Query: 69  -FLKDKPS---FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---------RINK 115
              + +P+      + +E   ++  +    +A+NA FD+  + AE++         R+  
Sbjct: 78  AAAEGRPAREVADEVAAELCGYWA-RGVPVVAYNAAFDLSLLAAEIRRYGLPSLSDRLGG 136

Query: 116 DPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
            P  P  +ID  +I R   ++   +  L ++   YG+ +
Sbjct: 137 RPTGP--VIDPYTIDRAVDRYRKGKRTLEAVSAEYGVPL 173


>gi|32266846|ref|NP_860878.1| DNA polymerase III subunit epsilon [Helicobacter hepaticus ATCC
           51449]
 gi|32262898|gb|AAP77944.1| DNA polymerase III [Helicobacter hepaticus ATCC 51449]
          Length = 266

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +  DIET G   +  +IIEIGA+++    K       F         PE + +L GI   
Sbjct: 74  VFVDIETNGAKPQQCQIIEIGALKV----KGGEIIDKFESYVYADEVPENITQLTGICQA 129

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIIDTL 127
            +   PS   +  EF  F       ++AHN  FD GF++  L++      L+P   + T+
Sbjct: 130 DIAYAPSIKEVLGEFRAFLGTD--VFVAHNVNFDYGFVDYHLRQCGLFGLLNPK--LCTI 185

Query: 128 SIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGAL 161
            +A++   S R  L  L +  GI   ++HR+   AL
Sbjct: 186 ELAKKTILSPRYALGFLNEFLGIRTAVTHRAYADAL 221


>gi|307328999|ref|ZP_07608167.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
 gi|306885361|gb|EFN16379.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
          Length = 240

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 31/175 (17%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-----FQVFLCPNGRKNSPEALKLHG 64
           I FD+ETTG D +  RI+    VE+ D     R       QV + P+G      A+ +HG
Sbjct: 9   IGFDLETTGTDPRTSRIVTAAVVEVRDGEPIGRREWLADPQVPI-PDG------AVAVHG 61

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDVGFINAELQRINKDPL 118
           IT+E  +      S      +      A W      +A+NA FD+  + AEL R    PL
Sbjct: 62  ITNE--RAAAEGRSAREVVEEVAEVLVAHWRAGAPVVAYNAAFDLSLLAAELGRHGLRPL 119

Query: 119 -------DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
                  +   ++D  +I R   ++   +  L ++C  YG+   H   H A  D+
Sbjct: 120 SERLEGAETGPVVDPYTIDRAVDRYRKGKRTLEAVCGEYGVV--HDRAHDAGADA 172


>gi|228914217|ref|ZP_04077833.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228845421|gb|EEM90456.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 927

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 10/167 (5%)

Query: 12  FDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI +  
Sbjct: 1   MDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGIDESM 58

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +   + +DT+ +
Sbjct: 59  VKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VDTVEL 115

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+   P++ +  L  L K++   + H   H A  D+   ++++++ +
Sbjct: 116 AQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 160


>gi|51969194|dbj|BAD43289.1| unknown protein [Arabidopsis thaliana]
          Length = 316

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 19/181 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D+ETTGL  +N+RIIEI A ++     +  TFQ  + P G      A  +HGI ++ 
Sbjct: 112 IVSDLETTGLHRENERIIEIAAQDIAGGGYS--TFQTLVNP-GVVPITNA-HIHGIRNDM 167

Query: 70  L--KDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAK-FDVGFINAELQRINKDPLDPS 121
           +   + P    +   F  +   +         +AHN K FD  F+  E  R + +     
Sbjct: 168 VCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNW 227

Query: 122 RIIDTLSIARRKHPSSR------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++D+L +AR    S        + L +L   Y +T      H AL D  LLS V+ K+ 
Sbjct: 228 LLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLT-REGDAHRALSDVLLLSKVFQKLT 286

Query: 176 V 176
           +
Sbjct: 287 I 287


>gi|227892520|ref|ZP_04010325.1| possible DNA-directed DNA polymerase III epsilon subunit
           [Lactobacillus ultunensis DSM 16047]
 gi|227865641|gb|EEJ73062.1| possible DNA-directed DNA polymerase III epsilon subunit
           [Lactobacillus ultunensis DSM 16047]
          Length = 370

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 15/170 (8%)

Query: 11  VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG   +N   II+ G   ++   K  +T+   + P+ R+     + L GI +E 
Sbjct: 12  VVDLETTGTQRENGHHIIQFGCA-IIKNLKVVKTYSFMINPH-REIPQSVVNLTGIHNED 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +  F     +       QNA ++AHN  FD+ F+N EL +   D L  ++ IDT+ +
Sbjct: 70  VAKEKDFKFYAPKIVKIL--QNAVFVAHNVDFDLPFLNYELTQHGYDALT-NKAIDTVEL 126

Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+   P+      +DL S      + I H + H A  D++  + + IK++
Sbjct: 127 AKIAFPTLPSYKLSDLTS-----QLEIKHLNPHKADSDAYGTAILLIKII 171


>gi|71734762|ref|YP_276473.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555315|gb|AAZ34526.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 204

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+   +  R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 4   RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVELFQSLM--NAGVRIPAFIEGLTGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF        +AHNA FD  F + EL RI +  L+ S    
Sbjct: 61  SNNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK-LEQSFACS 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            L +ARR  P + N        Y    +    H A+ D+ + +++
Sbjct: 118 ML-LARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 161


>gi|73662598|ref|YP_301379.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642618|sp|Q49XR1|DING_STAS1 RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|72495113|dbj|BAE18434.1| putative ATP-dependent DNA helicase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 900

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +     +  P    L  I ++
Sbjct: 8   VVDLETTGNQLDYDEIIQIG----ITFVRENKIIGTYHSMIKTDLEIPPFIQALTSIEED 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  I  + +   +     ++AHN  FD+ FI    ++ + +   P +++DTL 
Sbjct: 64  MLNQAPYFHEIAEDIYKQID--GCIFVAHNVAFDLNFIKKSFKQCHIN-YRPKKVMDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           + +   P+ ++  L+ L + +GI +  +HR+   A   + L+
Sbjct: 121 LFKVAFPTDKSYQLSELAEAHGIILNNAHRADEDAATTAQLM 162


>gi|332703188|ref|ZP_08423276.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553337|gb|EGJ50381.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 246

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 8/123 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKL-HGITDE 68
           V D E TG+D + D I+ IGAV +   + +    +   + P+     P+A  L H IT  
Sbjct: 51  VLDTELTGMDHRRDEIVSIGAVRIRGMAIQPGANWYAVVRPS---CLPKACTLIHRITPS 107

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P  S +  EF D+  +     + H+   D  F+N   +RI   P+  +  +DT+ 
Sbjct: 108 EVEAAPELSDVLPEFADYLGQSLI--VGHHVGMDAAFLNRACKRILGGPM-ANPCLDTMR 164

Query: 129 IAR 131
           +A+
Sbjct: 165 LAQ 167


>gi|256424475|ref|YP_003125128.1| DNA polymerase III subunit epsilon [Chitinophaga pinensis DSM 2588]
 gi|256039383|gb|ACU62927.1| DNA polymerase III, epsilon subunit [Chitinophaga pinensis DSM
           2588]
          Length = 456

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 7/148 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG  +  + I EI A+ + D     + ++  + P G         L GITDE +
Sbjct: 4   IVDIETTGGHASANGITEI-AIYIYDGRNIVQQYETLINP-GVPIPRYIQSLTGITDEMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + P+F  +  + +   +++   ++AHN  FD  FI   L +        ++ + T+ + 
Sbjct: 62  ANAPAFDEVAGDIFALLHDKI--FVAHNVNFDYSFIQYHLAQAGYQLR--TKKLCTVRLG 117

Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSK 157
           R+  P      L +LCK   I+++ R +
Sbjct: 118 RKIIPGLPSYSLGNLCKSLEISVTQRHR 145


>gi|325921138|ref|ZP_08183009.1| RNAse T [Xanthomonas gardneri ATCC 19865]
 gi|325548410|gb|EGD19393.1| RNAse T [Xanthomonas gardneri ATCC 19865]
          Length = 213

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 17/181 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCPN-GRKNSPEALKLH 63
            +V D+ET G D     ++EI  V + +D         T    L P  G +  P++L++ 
Sbjct: 27  PVVVDVETGGFDWNKHALLEIACVPIEMDAEGRFFPGDTASAHLVPAPGLEIDPKSLEIT 86

Query: 64  GITDE----FLK-DKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +    F K +K +   +F+        +  Q A  + HNA FD+ F+NA + R+  
Sbjct: 87  GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 146

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ K
Sbjct: 147 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCK 204

Query: 174 M 174
           +
Sbjct: 205 I 205


>gi|212712065|ref|ZP_03320193.1| hypothetical protein PROVALCAL_03142 [Providencia alcalifaciens DSM
           30120]
 gi|212685587|gb|EEB45115.1| hypothetical protein PROVALCAL_03142 [Providencia alcalifaciens DSM
           30120]
          Length = 214

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + K D ++EI A+ L +D   +   + T    + P  G    P AL+  G
Sbjct: 20  VVIDVETGGFNPKTDGLLEIAAITLKMDKDGWLAIDETLHFHVEPFEGANLEPSALEFTG 79

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFI--NAELQRIN 114
           I  T+     + +  +  +IF          +   A  +AHNA FD  F+   AE   + 
Sbjct: 80  IDPTNPLRGAVSEYDALHAIFKTIRKGMKNTDCNRAIMVAHNANFDHSFVMNAAERSGLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI    +  HGAL D++  + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLVF--GQTILAKACVTAGIPFDGKQAHGALYDTNRTALLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|295835840|ref|ZP_06822773.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
 gi|197698852|gb|EDY45785.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
          Length = 239

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 19/186 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG D ++DR++   AV  LD S      + +L   G +   EA  +HGI     +
Sbjct: 11  FDLETTGTDVEHDRVV-TAAVIRLDASGAVAQTRTWLLDPGIEIPAEATAIHGIPTARAR 69

Query: 72  DK--PSFSSI--FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL------DPS 121
            +  P+  ++   +E            +  NA++D+  ++ E +R     L      +P+
Sbjct: 70  AEGAPARGAVAEITEALAAGLRAGTPLVVMNARYDLSLLDRECRRHGVPALAELLGGEPA 129

Query: 122 RIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            ++D L +   A R    SR  L +LC+ YG+ +   S H A  D+  L+   +   +G 
Sbjct: 130 PVVDPLVLDKHADRYRRGSRV-LAALCEHYGVRLD--SAHDARSDA--LAATLLARSLGA 184

Query: 179 SQINFG 184
                G
Sbjct: 185 RHPRLG 190


>gi|329929867|ref|ZP_08283543.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp.
           HGF5]
 gi|328935845|gb|EGG32306.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp.
           HGF5]
          Length = 971

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 10/167 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +M+  V D ETTG  S  D II++G   + +    +R +  ++ P G    P    L GI
Sbjct: 13  EMKFAVLDFETTGNQSA-DEIIQVGLAIIEEDRSISRVYGTYVNP-GIPIPPFITGLTGI 70

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D PS   +  E     ++     + HN  FD  F+   L R    P    RI+D
Sbjct: 71  SDSDVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFS-GRILD 127

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           T+   +   PS     L  +   +G  + H   H A  DS  L+  Y
Sbjct: 128 TMHFLKICFPSLPSYQLGMVSSHFG--LEHDRPHQA--DSDALATAY 170


>gi|62180023|ref|YP_216440.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161614147|ref|YP_001588112.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|168819183|ref|ZP_02831183.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|198245565|ref|YP_002215700.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|81309702|sp|Q57PK2|RNT_SALCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|62127656|gb|AAX65359.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161363511|gb|ABX67279.1| hypothetical protein SPAB_01887 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197940081|gb|ACH77414.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|205343777|gb|EDZ30541.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320086089|emb|CBY95863.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|322714491|gb|EFZ06062.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|326623447|gb|EGE29792.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 215

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P    N  PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +     A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|224476576|ref|YP_002634182.1| hypothetical protein Sca_1089 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421183|emb|CAL27997.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 895

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 8/160 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG     D II+IG   +  +          L     +  P    L  I D+ L
Sbjct: 8   VVDLETTGNQKDYDDIIQIGITFVKGFEIVGSYHS--LIKTDLEIPPFIQALTSIEDQML 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P F+ +  E ++    +++ ++AHN  FD+ F+    ++ N     P ++IDT+ + 
Sbjct: 66  TQAPYFNEVAEEIYELM--KDSVFVAHNVAFDLTFLKKAFKKSNI-TYQPRKVIDTVELF 122

Query: 131 RRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           +   P+ ++  L+ L + + I +  +HR+   A   + L+
Sbjct: 123 KIAFPTDKSYQLSELAEYHDIPLENAHRADEDAATTAKLM 162


>gi|21220034|ref|NP_625813.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)]
 gi|256788866|ref|ZP_05527297.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289772754|ref|ZP_06532132.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|6822230|emb|CAB70936.1| putative DNA polymerase III [Streptomyces coelicolor A3(2)]
 gi|289702953|gb|EFD70382.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
          Length = 241

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 13/154 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D++ DRI+   A+ + D          +L   G      A  +HG+T+E++
Sbjct: 11  AFDTETTGVDTETDRIVS-AALVVQDAPGLRPRVTRWLVNPGVPVPESATAVHGLTEEYV 69

Query: 71  KDKPSF-SSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLD------P 120
           +    + + +  E  +   EQ       +  NA FD+  ++ EL+R     L       P
Sbjct: 70  QRHGRWPAPVMYEMAEALTEQARAGRPLVVMNAPFDLTLLDRELRRHRASSLGRWLERTP 129

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
             ++D   + +   ++   R  L  LC  YG+ +
Sbjct: 130 LHVLDPHVLDKHLDRYRKGRRTLTDLCAHYGVEL 163


>gi|319786534|ref|YP_004146009.1| ribonuclease T [Pseudoxanthomonas suwonensis 11-1]
 gi|317465046|gb|ADV26778.1| ribonuclease T [Pseudoxanthomonas suwonensis 11-1]
          Length = 219

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 21/183 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE-------LLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            +V D+ET G D     ++E+ AV        LL   KT      F+   G +  P++L+
Sbjct: 31  PVVVDVETGGFDWNRHALLEMAAVPIEMDEQGLLVPGKTAAAH--FIPAPGTEIDPKSLE 88

Query: 62  LHGIT--DEFLKDKP---SFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRI 113
           + GI     F   KP   +   +F++          Q A  + HNA FD+ F+NA + R 
Sbjct: 89  VTGIVLDHPFRLAKPERDALGHVFNQVRAAVRRNGCQRAILVGHNAHFDLNFVNAAVARS 148

Query: 114 N--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              ++P  P  + DT+++    +   +  L    +  G+    R  H A+ D+   + ++
Sbjct: 149 GHKRNPFHPFSVFDTVTLGGIAY--GQTVLARALQAAGLEWDAREAHSAVYDAEQTAKLF 206

Query: 172 IKM 174
            ++
Sbjct: 207 CRI 209


>gi|296101815|ref|YP_003611961.1| exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295056274|gb|ADF61012.1| exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 220

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET  L      I+E+ +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 4   VIDTETCDLQGG---IVEVASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD        +R+   P  P   I T+ +A
Sbjct: 59  ADKPWIEEVIPHYYG-----SPWYVAHNASFD--------RRVL--PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   +++        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVRTPEGLHHHRALYDCYITAALLIDIM 151


>gi|283457705|ref|YP_003362291.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa DY-18]
 gi|283133706|dbj|BAI64471.1| DNA polymerase III, epsilon subunit [Rothia mucilaginosa DY-18]
          Length = 231

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 12/177 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   N +R   FD+ETTG+D    RI+    + LLD          +L   G +    A 
Sbjct: 1   MTWMNGLRA-TFDLETTGVDVTTARIVTASLI-LLDPQGNVVRRGEWLADPGVEIPAGAA 58

Query: 61  KLHGITDEFLKD--KPSFSSIF--SEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--IN 114
            +HGIT E+ ++  +P+   ++  +      N      IA NA +D   ++ E+ R  I 
Sbjct: 59  AVHGITTEYAREHGRPAREVVWELAGAIGALNLDGVPIIAFNAAYDFSVLHHEMLRHNIA 118

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
              L P  ++D   + +   P  R    L  L   YG+++  +H S   AL    LL
Sbjct: 119 NGELPPGVVLDPYVLHKHVIPRKRGKRTLEVLAAEYGVSLENAHTSADDALAAERLL 175


>gi|288939927|ref|YP_003442167.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum
           DSM 180]
 gi|288895299|gb|ADC61135.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum
           DSM 180]
          Length = 225

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 22/175 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEA-LKLHG 64
           +  D+ETTGLD + D I+ +G V L    +D S T R   V +     ++ PEA   +H 
Sbjct: 42  LAIDLETTGLDQRQDLILSVGYVVLHGPEIDLS-TARHHLVRI----DRSIPEASAVIHQ 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD+          +  E       +    IAH+A  + GF++   QR     L P R++
Sbjct: 97  ITDDQAATGRELEDVLGEVLAALTGRVM--IAHHAGIEQGFLSQACQRCWGRGL-PLRLV 153

Query: 125 DTLSIA-----RRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           DT ++A     RR+ P   +D  L++L  RY   +     H AL D+   +++++
Sbjct: 154 DTQTLAHRTLERRQIPFKASDLRLHALTSRY--NLPRHGAHNALSDALSAAELFL 206


>gi|325955495|ref|YP_004239155.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
 gi|323438113|gb|ADX68577.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
          Length = 466

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 9/152 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69
           + DIET G  + +  I EI A+ L +  +    +Q  + P   K  P  ++ L GIT E 
Sbjct: 13  IVDIETNGSAAAHGGITEI-AIFLHNGKEIIDEYQTLVNP--EKPIPFHIQTLTGITPEM 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P F  +  + + +   + A ++AHN  FD  F++ +   +  D   P ++  T+ +
Sbjct: 70  LVDAPRFDEVAKDVYSYL--EKAIFVAHNVSFDFSFLHKQFLDVGID-WKPIKLC-TVRL 125

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           AR+  P  +   L SLCK   I +  R +   
Sbjct: 126 ARKIFPGYTSYSLGSLCKNLNIPLHDRHRAAG 157


>gi|126665981|ref|ZP_01736961.1| ribonuclease T [Marinobacter sp. ELB17]
 gi|126629303|gb|EAZ99920.1| ribonuclease T [Marinobacter sp. ELB17]
          Length = 214

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +   D ++EI AV +      +     T+   + P  G      +L   G
Sbjct: 21  VVVDVETAGFNPAKDALLEIAAVMVTMDENGFLHRGETYLQQIDPFEGANFEQSSLDFTG 80

Query: 65  ITD-----EFLKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQR--IN 114
           I       E + ++   S IFS        F+ + A  + HNA FD  F+ A  +R  I 
Sbjct: 81  IDPWDPEREAVPEREGLSEIFSPIRKAMKAFDCKRAVLVGHNATFDHNFVFAASERADIK 140

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +      L   CK   I    +  H A  D+   +D++  +
Sbjct: 141 RNPFHPFSTFDTATLAGLAY--GHTVLAQACKLARIPFDSKEAHSAAYDAEKTADLFCSI 198

Query: 175 M 175
           +
Sbjct: 199 V 199


>gi|315585931|gb|ADU40312.1| DNA polymerase III subunit epsilon [Helicobacter pylori 35A]
          Length = 287

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GI  E   
Sbjct: 77  DLETTGSCPLKHEILEIGAVQVRGGGIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 133 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221


>gi|110805628|ref|YP_689148.1| ribonuclease T [Shigella flexneri 5 str. 8401]
 gi|123147001|sp|Q0T4C2|RNT_SHIF8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|110615176|gb|ABF03843.1| RNase T [Shigella flexneri 5 str. 8401]
          Length = 215

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDKPSFS--SIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQR--I 113
           I D    D+ + S      E      +         A  +AHNA FD  F+ A  +R  +
Sbjct: 80  I-DPNDPDRGAVSEYEALHEICKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A       +  L+  C+  G+       H AL D+   + ++ +
Sbjct: 139 KRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCE 196

Query: 174 MM 175
           ++
Sbjct: 197 IV 198


>gi|308183650|ref|YP_003927777.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4]
 gi|308065835|gb|ADO07727.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4]
          Length = 287

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 92/214 (42%), Gaps = 17/214 (7%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GI  E   
Sbjct: 77  DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 133 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQINFGFKT 187
           R   S R  L+ L     +GI +SHR+   AL    L     + +   +  +     F  
Sbjct: 190 RTILSMRYSLSFLKELLGFGIEVSHRAYADALASYKLFEICLLNLPSYIKTTMDLIDFSK 249

Query: 188 NEDRFFK-----EEKKTVPNISLLKRDKPLFTRI 216
             +   K       ++T P  SL +R K LF  I
Sbjct: 250 CANTLIKRPPRARHQETPPPFSLFERTKGLFNII 283


>gi|294811599|ref|ZP_06770242.1| Putative DNA polymerase III epsilon subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324198|gb|EFG05841.1| Putative DNA polymerase III epsilon subunit [Streptomyces
           clavuligerus ATCC 27064]
          Length = 287

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D +NDRI+   AV + D +        +L   G    P A ++HG+TD+ +
Sbjct: 57  AFDTETTGVDVENDRIVA-AAVVVQDMAGGRPRITRWLINPGIPVPPGATEVHGLTDDHV 115

Query: 71  KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLD------P 120
           +    + + +  E         A     +  NA FD+  ++ EL+R    PL       P
Sbjct: 116 QRNGRWPAPVLEEVAKTVAGHCAAGRPLVVMNAPFDLTILDRELRRHRATPLSRYLEHTP 175

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
             ++D   + ++  ++   R  L  LC +Y + +
Sbjct: 176 LTVLDPRVLDKQLDRYRKGRRSLVDLCSQYEVVL 209


>gi|16760479|ref|NP_456096.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16764782|ref|NP_460397.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29141761|ref|NP_805103.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56413597|ref|YP_150672.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|167551596|ref|ZP_02345350.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167994263|ref|ZP_02575355.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168229807|ref|ZP_02654865.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168235505|ref|ZP_02660563.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168240948|ref|ZP_02665880.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168264727|ref|ZP_02686700.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|194451220|ref|YP_002045472.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194469134|ref|ZP_03075118.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194737431|ref|YP_002114446.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197251543|ref|YP_002146611.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197264202|ref|ZP_03164276.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197362521|ref|YP_002142158.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|200389402|ref|ZP_03216013.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|213426003|ref|ZP_03358753.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213586461|ref|ZP_03368287.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
 gi|213609934|ref|ZP_03369760.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|213649691|ref|ZP_03379744.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|213855187|ref|ZP_03383427.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|238913165|ref|ZP_04657002.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289805704|ref|ZP_06536333.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
 gi|289824912|ref|ZP_06544333.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|54039259|sp|P66685|RNT_SALTI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|54042002|sp|P66684|RNT_SALTY RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|81821446|sp|Q5PH07|RNT_SALPA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|25356018|pir||AD0695 ribonuclease T [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16419954|gb|AAL20356.1| RNase T [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16502775|emb|CAD01933.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29137389|gb|AAO68952.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56127854|gb|AAV77360.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|194409524|gb|ACF69743.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194455498|gb|EDX44337.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194712933|gb|ACF92154.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197093998|emb|CAR59494.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197215246|gb|ACH52643.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197242457|gb|EDY25077.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197291124|gb|EDY30477.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|199601847|gb|EDZ00393.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205323544|gb|EDZ11383.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205327828|gb|EDZ14592.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205335262|gb|EDZ22026.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205339447|gb|EDZ26211.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205346854|gb|EDZ33485.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|261246638|emb|CBG24448.1| Exoribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993323|gb|ACY88208.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301157967|emb|CBW17462.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912417|dbj|BAJ36391.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224052|gb|EFX49115.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323129704|gb|ADX17134.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332988319|gb|AEF07302.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 215

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P    N  PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +     A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|326803711|ref|YP_004321529.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651377|gb|AEA01560.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 890

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 11/168 (6%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   ++ DRII+IG V  L+  K    F+  + P      P+ +  L GI  E
Sbjct: 7   VVDLETTGTKYNRGDRIIQIGVV-FLEGQKKIGEFKSNIQP--LIPVPKNISDLTGIQTE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P F  I  +   F   Q+  ++AHN  FD  F++A  + +    LD    IDT+ 
Sbjct: 64  DLRDAPLFEDIAPDL--FQQLQDCVFVAHNINFDYKFLSASFEGVGLPALDLEG-IDTVE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + R  +P + +  L      +GI +     H A+ D+   + + +++M
Sbjct: 121 LIRVLYPQAASYKLGDFSLDHGINLV--KAHTAIEDARATAQLLVQVM 166


>gi|118602537|ref|YP_903752.1| ribonuclease T [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567476|gb|ABL02281.1| RNAse T [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 195

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 92/192 (47%), Gaps = 21/192 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD-----YSKTNRTFQVFLCPN 51
           M+ K+++R    +V D ET G + K D ++EI A+ + +D     Y K ++ F +     
Sbjct: 1   MLIKDRIRGYLPVVIDTETGGFNEKTDAMLEICAIVIGIDKMNNLYPKGSQHFHIEPFKG 60

Query: 52  GRKNSPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDV 103
           G   S  ALK +GI  +      +K+  +   I+++ +    +++   A  + HNA FD+
Sbjct: 61  GMLES-SALKFNGIDVDNPFRMAVKEIDAIKQIYTKVYAELKQESCTRAILVGHNAFFDL 119

Query: 104 GFINAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           GF++A   R   K P      +DT+S++   +  +   L    ++  I       H AL 
Sbjct: 120 GFLHAATDRCKLKSPFHQFSTLDTVSLSALHYGETV--LAKAMRKANIEWDDSCAHSALY 177

Query: 163 DSHLLSDVYIKM 174
           D+   ++++ K+
Sbjct: 178 DTQKTAELFCKI 189


>gi|260063099|ref|YP_003196179.1| hypothetical protein RB2501_15959 [Robiginitalea biformata
           HTCC2501]
 gi|88784668|gb|EAR15838.1| hypothetical protein RB2501_15959 [Robiginitalea biformata
           HTCC2501]
          Length = 375

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 9/164 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V DIETTG     + I EI A+   D  +   TF   + P  R   P   KL GI 
Sbjct: 1   MTYAVLDIETTGGKFDEEGITEI-AIHRFDGHEVVDTFISLINPE-RPIQPYVQKLTGID 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + ++  P F  +     +    +++  +AHNA+FD   +  E +R+  +     + + T
Sbjct: 59  PKMVQTAPRFHQVAKRIVEI--TRDSVLVAHNAQFDYRILRTEFRRLGYN--FERKTLCT 114

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITIS--HRSKHGALLDSHLL 167
           + +++R  P +  + L  L +  GI +S  HR+   AL    LL
Sbjct: 115 VDLSQRLIPDAESHSLGKLVRSLGIPVSNRHRANGDALATLKLL 158


>gi|262279766|ref|ZP_06057551.1| ribonuclease T [Acinetobacter calcoaceticus RUH2202]
 gi|262260117|gb|EEY78850.1| ribonuclease T [Acinetobacter calcoaceticus RUH2202]
          Length = 220

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 83/185 (44%), Gaps = 22/185 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI  + ++  ++        F   + P  G      +L   G
Sbjct: 24  VVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRI 113
           I D F          ++ +   IF    +   +Q+   A  + HNA FD+GF+ A + R 
Sbjct: 84  I-DPFNPMRMAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFVQAAIART 142

Query: 114 ---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              N++P     ++DT++++       +  L   C + GI    +  H AL D+   +++
Sbjct: 143 STKNQNPFHSFSVMDTVTLSAVMF--GQTVLAKACIQAGIEFDGKEAHSALYDTQKTAEL 200

Query: 171 YIKMM 175
           +  ++
Sbjct: 201 FCYIL 205


>gi|154333792|ref|XP_001563151.1| mitochondrial DNA polymerase I protein B [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134060163|emb|CAM45570.1| putative mitochondrial DNA polymerase I protein B [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 1419

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FDIETTGL+   D I+E+   + ++    N TF   + P  R  SP  + +H IT+
Sbjct: 764 RIVFFDIETTGLNPSTDAIVEVAMFDPIE----NSTFHTLVNPQ-RPISPRTVGIHHITN 818

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
           E ++D P+   +      +     A +  H     VG
Sbjct: 819 EMVRDAPTVDVVAKSIGQYLRLDMASYNPHEILVLVG 855


>gi|255029619|ref|ZP_05301570.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes LO28]
          Length = 132

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 8/131 (6%)

Query: 8   RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R IV D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  ++ L GI
Sbjct: 5   RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +D
Sbjct: 62  SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118

Query: 126 TLSIARRKHPS 136
           T+ +AR  +P 
Sbjct: 119 TVELARIMYPG 129


>gi|21929661|gb|AAM81963.1|AF445377_1 DNA polymerase I-like protein B [Trypanosoma brucei]
          Length = 1404

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+ K R +VFDIE+TGL++  D IIE+ A + ++      +F   + P  R   P++  +
Sbjct: 757 RRRKYRLVVFDIESTGLNTATDAIIEVAAFDPVE----GTSFSSLVNPQ-RPIPPQSTAI 811

Query: 63  HGITDEFLKDKPSFSSIFSEF 83
           H ITD  ++  P  S +   F
Sbjct: 812 HHITDSMVQGAPRLSEVTQAF 832


>gi|71755261|ref|XP_828545.1| mitochondrial DNA polymerase I protein B [Trypanosoma brucei
           TREU927]
 gi|70833931|gb|EAN79433.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
           brucei]
 gi|261334421|emb|CBH17415.1| conserved hypothetical protein, conserved [Trypanosoma brucei
           gambiense DAL972]
          Length = 1404

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+ K R +VFDIE+TGL++  D IIE+ A + ++      +F   + P  R   P++  +
Sbjct: 757 RRRKYRLVVFDIESTGLNTATDAIIEVAAFDPVE----GTSFSSLVNPQ-RPIPPQSTAI 811

Query: 63  HGITDEFLKDKPSFSSIFSEF 83
           H ITD  ++  P  S +   F
Sbjct: 812 HHITDSMVQGAPRLSEVTQAF 832


>gi|293608826|ref|ZP_06691129.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|299771039|ref|YP_003733065.1| ribonuclease T [Acinetobacter sp. DR1]
 gi|292829399|gb|EFF87761.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|298701127|gb|ADI91692.1| ribonuclease T [Acinetobacter sp. DR1]
 gi|325121407|gb|ADY80930.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse
           activity) [Acinetobacter calcoaceticus PHEA-2]
          Length = 220

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 83/185 (44%), Gaps = 22/185 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI  + ++  ++        F   + P  G      +L   G
Sbjct: 24  VVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRI 113
           I D F          ++ +   IF    +   +Q+   A  + HNA FD+GF+ A + R 
Sbjct: 84  I-DPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFVQAAIART 142

Query: 114 ---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              N++P     ++DT++++       +  L   C + GI    +  H AL D+   +++
Sbjct: 143 STKNQNPFHSFSVMDTVTLSAVMF--GQTVLAKACIQAGIEFDGKEAHSALYDTQKTAEL 200

Query: 171 YIKMM 175
           +  ++
Sbjct: 201 FCYIL 205


>gi|168463155|ref|ZP_02697086.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195634173|gb|EDX52525.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 215

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P    N  PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +     A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|323439142|gb|EGA96870.1| DNA polymerase III alpha chain [Staphylococcus aureus O11]
 gi|323441573|gb|EGA99223.1| DNA polymerase III alpha chain [Staphylococcus aureus O46]
          Length = 157

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 9/155 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   + K   I  +G V+++D S+   TF   + P     S + +K+HGI  E 
Sbjct: 7   VALDFETA--NGKRTSICSVGMVKVID-SQITETFHTLVNPQDYF-SQQNIKVHGIQPED 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ P+F  +F     F  +     +AHNA FD+  ++  +Q I   P        +  +
Sbjct: 63  VENAPTFDYVFPYMMQFIAD--LPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQL 119

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A+R   S R  L  + + Y +       H AL D+
Sbjct: 120 AKRTVDSYRYGLKHMMEFYQLDF--HGHHDALNDA 152


>gi|194445493|ref|YP_002040683.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194404156|gb|ACF64378.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 215

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P    N  PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +     A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|323699453|ref|ZP_08111365.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio sp.
           ND132]
 gi|323459385|gb|EGB15250.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
           desulfuricans ND132]
          Length = 178

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   + +R +  D ET   D K D    +G V +       R +++   P  R N P  +
Sbjct: 1   MPTLDDVRFVAIDFETA--DPKRDSACALGIVVVDRGEIVARDYRLIRPPRARFN-PFCV 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRIN-KDPL 118
           ++HGI  E + ++PSF  ++ E    F  + A++ +AHNA FD   ++   +      P 
Sbjct: 58  RVHGIHWEDVCNEPSFGDLWPELEVHF--RGADFLVAHNAAFDKSVLHTCCKESGWTAPE 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P   + T+ +AR+    S N L ++C+  GI ++H   H A  D+   + + +
Sbjct: 116 QP--FLCTVQLARKTWELSCNKLPNVCEYLGIELNH---HNAASDAEACALIAV 164


>gi|255534839|ref|YP_003095210.1| DNA Pol III Epsilon Chain [Flavobacteriaceae bacterium 3519-10]
 gi|255341035|gb|ACU07148.1| DNA Pol III Epsilon Chain [Flavobacteriaceae bacterium 3519-10]
          Length = 254

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 9/141 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           +FD+ETTG++   DRI+EI  +++  D S+ ++T+ V    N     P E+ ++HGI+D+
Sbjct: 11  IFDLETTGVNVAKDRIVEISILKVNPDGSRESKTWLV----NPEMYIPKESTEIHGISDD 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127
            +K+ P F  I  +  +     +      N +FDV  +  EL R   D  L   +++D  
Sbjct: 67  DVKNSPKFKEIAPKVMEMITGTDLGGFNSN-RFDVPLLAEELLRAGIDFDLTKFKLVDVQ 125

Query: 128 SIARRKHPSSRN-DLNSLCKR 147
           +I  +  P + +   N  CK+
Sbjct: 126 TIYHKMEPRNLSAAYNFYCKK 146


>gi|312867475|ref|ZP_07727684.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           parasanguinis F0405]
 gi|311097176|gb|EFQ55411.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           parasanguinis F0405]
          Length = 817

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 87/172 (50%), Gaps = 10/172 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           + K +  + D+E T   S N +II++G V + D   T ++++  + P+ R +     +L 
Sbjct: 3   RQKRKYAIVDLEATSAGS-NAKIIQVGIVIVEDGVIT-QSYETDVNPHERLDE-HIKQLT 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G+TD  L+  P F+ +  E ++    ++A ++AHN KFD   +   L     +   P   
Sbjct: 60  GLTDARLRKAPEFAQVAKEIFELI--EDAVFVAHNVKFDANLLAEALFWEGFELTTPR-- 115

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           IDT+ +++  +P+  R +L +L     I + H   H AL D+   + + +K+
Sbjct: 116 IDTVELSQIFYPTLERYNLGALAAELQIELHH--AHSALADAMATAQLLLKV 165


>gi|114562725|ref|YP_750238.1| exonuclease, RNase T and DNA polymerase III [Shewanella
           frigidimarina NCIMB 400]
 gi|114334018|gb|ABI71400.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
           frigidimarina NCIMB 400]
          Length = 229

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 19/165 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+E TGLD  +D++I IG V +++     ++   + +  +G     ++  +HGI D 
Sbjct: 44  MAIDLEMTGLDPIHDQVISIGLVPIINGVIPLDKAQHMMISISGSVG--QSATVHGIVDN 101

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWI--AHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            L      +   +E  D+F  +   +I  AH+A  D+ FI  +L R     + P   IDT
Sbjct: 102 QLH----MALTLAEAIDWFLSKTKGYILVAHHAPLDIQFIQQQLIRCFGQSI-PLVFIDT 156

Query: 127 LSIARRK----HPSSRND---LNSLCKRYGITISHRSKHGALLDS 164
           L+I +++     P  +     LN+   RY + +   S H AL+D+
Sbjct: 157 LAIEKKRCLMQQPVLKEGSLRLNASRTRYRLPV--YSAHNALIDA 199


>gi|307326746|ref|ZP_07605938.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
 gi|306887509|gb|EFN18503.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
          Length = 241

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 21/159 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D ++DRI+   A+ +   + +    + +L   G    P A ++HG+TD  L
Sbjct: 11  AFDTETTGVDVEHDRIVS-AALVVQRGTGSLPEIRRWLVSPGVPVPPAATEIHGLTDAHL 69

Query: 71  KDKPSF-SSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR------------IN 114
           +    + + +  E      EQ A     +  NA FD+  ++ EL+R             +
Sbjct: 70  QRHGRWPAPVMDEMARAIAEQTARGTPLVVMNAPFDLTLLDRELKRHRNSSLAGYLSLRS 129

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS 153
              LDP R++D      RK    R  L  LC  YG+ ++
Sbjct: 130 MSVLDP-RVLDKHLDRYRK---GRRTLLDLCAHYGVELT 164


>gi|261406087|ref|YP_003242328.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           Y412MC10]
 gi|261282550|gb|ACX64521.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           Y412MC10]
          Length = 958

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 10/166 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  V D ETTG  S  D II++G   + +    +R +  ++ P G    P    L GI+
Sbjct: 1   MKFAVLDFETTGNQSA-DEIIQVGLAIIEEDRSISRVYGTYVNP-GIPIPPFITGLTGIS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D PS   +  E     ++     + HN  FD  F+   L R    P    RI+DT
Sbjct: 59  DSDVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFS-GRILDT 115

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +   +   PS     L  +   +G  + H   H A  DS  L+  Y
Sbjct: 116 MHFLKICFPSLPSYQLGMVSSHFG--LEHDRPHQA--DSDALATAY 157


>gi|157145382|ref|YP_001452701.1| exodeoxyribonuclease X [Citrobacter koseri ATCC BAA-895]
 gi|157082587|gb|ABV12265.1| hypothetical protein CKO_01122 [Citrobacter koseri ATCC BAA-895]
          Length = 220

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++     N      L    R  SP+A+ +H I++  +
Sbjct: 4   VIDTETCGLQGG---IVEIASVDVVAGRIVNPMSH--LVRPDRPISPQAMAIHRISESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    I   +        +EW +AHNA FD        +R+   P  P   I T+ +
Sbjct: 59  ADKPWIEDIIPLY------HGSEWYVAHNASFD--------RRVL--PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           +RR  P  +    +L K   +++        H AL D ++ + + I +M
Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|89891036|ref|ZP_01202544.1| putative DNA polymerase III, epsilon subunit [Flavobacteria
           bacterium BBFL7]
 gi|89516680|gb|EAS19339.1| putative DNA  polymerase III, epsilon subunit [Flavobacteria
           bacterium BBFL7]
          Length = 255

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 7/107 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           FD+ETTG++   DRI+EI   ++L D ++   T++V    N     P A   +HGITD+ 
Sbjct: 12  FDLETTGVNISKDRIVEIAIHKVLPDGTEKTYTYRV----NPTVPIPAATTAVHGITDDM 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           +KD+P+F  +  E  +   + +      N +FD+  +  E+ R   D
Sbjct: 68  VKDEPTFKELAHEIHNIIKDSDLAGFNSN-RFDIPLLAEEMLRAGVD 113


>gi|72161306|ref|YP_288963.1| DNA polymerase III subunit epsilon [Thermobifida fusca YX]
 gi|71915038|gb|AAZ54940.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX]
          Length = 210

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +HGIT E + D P++  + +   +F     + ++AHNA FD+G I A          +
Sbjct: 55  IAVHGITPEHVADAPAWPQVHTTILEF--AAGSPFVAHNAVFDMGVIRAACAHAGLP--E 110

Query: 120 PS-RIIDTLSIARRKHPSSRND-LNSLCKRYG 149
           PS     +L IARR  P+ RN  L ++C+  G
Sbjct: 111 PSLHYACSLDIARRTWPALRNHRLPTVCRTIG 142


>gi|307131423|ref|YP_003883439.1| ribonuclease T (RNase T) [Dickeya dadantii 3937]
 gi|306528952|gb|ADM98882.1| ribonuclease T (RNase T) [Dickeya dadantii 3937]
          Length = 225

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 24/199 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L +D S   + + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDETLHFHIEPFEGAILRPEALAFNG 79

Query: 65  I---------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113
           I           E+      F ++     D  N      +AHNA FD  F+ A  +R  +
Sbjct: 80  IDPANPLRGAVSEYEALHEIFKAVRKGIKD-LNCNRGIIVAHNATFDHSFLMAAAERCGL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C    I       H AL D+   + ++ +
Sbjct: 139 KRNPFHPFATFDTAALSGLV--LGQTVLAKACIAAEIPFDASQAHSALYDTERTAQLFCE 196

Query: 174 MM-----VGGSQINFGFKT 187
           ++     +GG  +  G  T
Sbjct: 197 LVNRWKRMGGWPLASGTDT 215


>gi|332674336|gb|AEE71153.1| DNA-directed DNA polymerase III epsilon subunit [Helicobacter
           pylori 83]
          Length = 287

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GI  E   
Sbjct: 77  DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 133 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221


>gi|331006083|ref|ZP_08329419.1| Ribonuclease T [gamma proteobacterium IMCC1989]
 gi|330420120|gb|EGG94450.1| Ribonuclease T [gamma proteobacterium IMCC1989]
          Length = 201

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 29/187 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S+ D ++E+ A  L          ++ ++  + P  G      AL   G
Sbjct: 11  VVIDVETGGFNSRTDALLEVSAATLAMDDEGILSIDQLYEYHVTPFEGANIEQSALDFTG 70

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE--------------QNAEWIAHNAKFDVGFINAEL 110
           I  E     P  ++I  E  D  NE                A  +AHNA FD+GF+N   
Sbjct: 71  IDLE----NPDRNAIPEE--DMLNELFRVIRKAVKRNDCTRAIMVAHNAHFDLGFVNEAA 124

Query: 111 QR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           +R  + ++P  P   +DT +++          L   C+   I  S++  H A  D+   +
Sbjct: 125 ERCGMKRNPFHPFSCMDTATLSGLAF--GHTVLAQACQLAKIGFSNKEAHAASYDTRKTA 182

Query: 169 DVYIKMM 175
           +++  ++
Sbjct: 183 ELFCVIV 189


>gi|318076131|ref|ZP_07983463.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
          Length = 384

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 17/170 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI-TDEFL 70
           FD+ETTG D + DRI+   AV  LD S T    + +L   G +   EA  +HGI T    
Sbjct: 11  FDLETTGTDVEQDRIVTA-AVIRLDSSGTVAHTRTWLLDPGVEIPAEATAIHGIPTARAR 69

Query: 71  KDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPL------DPS 121
            D        +E  +    +       +  NA++D+  ++ E +R     L      +P+
Sbjct: 70  ADGAPARGAVAEITEALAAELRAGTPLVVMNARYDLSLLDRECRRHGVPALAELLGAEPA 129

Query: 122 RIIDTLSI---ARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHL 166
            +ID L +   A R    SR  L +LC  YG+ +  +H ++  AL  + L
Sbjct: 130 PVIDPLVLDKHADRYRRGSRV-LAALCAHYGVRLDTAHDARSDALAATLL 178


>gi|71066188|ref|YP_264915.1| ribonuclease T [Psychrobacter arcticus 273-4]
 gi|71039173|gb|AAZ19481.1| RNAse T [Psychrobacter arcticus 273-4]
          Length = 239

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 20/191 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R  K   +V D+ET G +++ D ++EI  + +L   +            + P  G    P
Sbjct: 29  RFRKFLPVVVDVETAGFNAQTDALLEIACIPVLMNEQGVFYPGEALNAHIEPFEGANLEP 88

Query: 58  EALKLHGI-TDEFLK------DKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFIN 107
            AL   GI  +  L+      +K +   IF    +    ++      I HNA FD+ F+N
Sbjct: 89  SALAFTGIDPNNPLRKAIAEDEKTALRRIFKGLKEVRRNEDCRQCVLIGHNAHFDLAFLN 148

Query: 108 AELQRINK---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A + R N    +P     + DT++++       +  L   CK  G+       H AL D+
Sbjct: 149 AAVLRTNNKSHNPFHNFSVFDTVTLSALAF--GQTVLARACKAAGLDFDGNDAHSALYDT 206

Query: 165 HLLSDVYIKMM 175
              ++++  ++
Sbjct: 207 QKTAELFCYIL 217


>gi|42523607|ref|NP_968987.1| DNA polymerase III subunit epsilon [Bdellovibrio bacteriovorus
           HD100]
 gi|39575813|emb|CAE79980.1| DNA polymerase III polC-type [Bdellovibrio bacteriovorus HD100]
          Length = 295

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 19/107 (17%)

Query: 11  VFDIETTGLDSKNDRIIEIG---------AVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + D+ETTGL+   D IIEIG         + E+L  +K+  +FQ      G+  SPE   
Sbjct: 48  ILDVETTGLNQTEDTIIEIGIRQFLFNKNSGEVLAVTKSYSSFQ----DPGKPISPEIQA 103

Query: 62  LHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           L GITDE +  K   ++++     D    +    IAHNAKFD  FI+
Sbjct: 104 LTGITDEMVAGKQIDWTAV-----DALLNECQLIIAHNAKFDRPFID 145


>gi|312959243|ref|ZP_07773761.1| ribonuclease T [Pseudomonas fluorescens WH6]
 gi|311286503|gb|EFQ65066.1| ribonuclease T [Pseudomonas fluorescens WH6]
          Length = 225

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCP-NGRKNSPEALKL 62
           +V D+ET G +   D ++EI A  +        Y +    F+V   P  G      AL+ 
Sbjct: 33  VVIDVETGGFNCATDALLEIAATTIGMDEQGFVYPEHTHFFRVE--PFEGANIEAAALEF 90

Query: 63  HGI-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN 114
            GI  D  L+    ++ + + IF            + A  + HN+ FD+GF+NA + R++
Sbjct: 91  TGIKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLD 150

Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++ 
Sbjct: 151 MKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFC 208

Query: 173 KMM 175
            ++
Sbjct: 209 GIV 211


>gi|146309558|ref|YP_001190023.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina ymp]
 gi|145577759|gb|ABP87291.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina
           ymp]
          Length = 235

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 7/131 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+ETTGLD +   I+ +G V L L   + +      + P G + S E++  H IT  
Sbjct: 46  VALDVETTGLDPREHAIVSLGLVPLNLQRIRCSEARYWVVKPAG-ELSAESVTFHHITHS 104

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127
            ++  P  +S+  E  +    +    +AH    +  F++  L+R + +  + P  IIDT+
Sbjct: 105 DIRHAPRLASVLDELLEALAGKVV--VAHYRHIERSFLDQALRRHLGEGLIFP--IIDTM 160

Query: 128 SIARRKHPSSR 138
            +  R HP  R
Sbjct: 161 ELEARLHPKRR 171


>gi|241894744|ref|ZP_04782040.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides
           ATCC 33313]
 gi|241871956|gb|EER75707.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides
           ATCC 33313]
          Length = 177

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 15/171 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG---RKNSPEALKLH 63
           M  I  D ET    +K    + +G   + D +K    F   + P+    ++N+    ++H
Sbjct: 1   MNFIAMDFETAS--AKRYSAVSLGLAVVRD-NKLVDEFYTLIKPDSFFDKRNT----RIH 53

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT+  +++ P F  ++ +   F+   N   IAHNA FD G +   L   + D L     
Sbjct: 54  GITEADVRNAPIFPEVWEQIQQFYTP-NQLVIAHNAPFDNGVLRETLTHYDID-LPHYLS 111

Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +DT+  +R+ +P   N  LN++    GI + H   H AL D+   +++ ++
Sbjct: 112 LDTVRTSRKLYPELPNHKLNTVAAALGIDLKHH--HNALNDTVAAAEILVR 160


>gi|74026182|ref|XP_829657.1| exonuclease [Trypanosoma brucei TREU927]
 gi|70835043|gb|EAN80545.1| exonuclease, putative [Trypanosoma brucei]
          Length = 366

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 10/137 (7%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-------DYSKTNRTFQVFLCPNGRKN 55
           R   +  +  D+ETTG+    D II I  VELL        +  + R+F   + P  +K 
Sbjct: 97  RLQPLSAVCIDVETTGIAPTKDEIISIAVVELLFGAAGHNQWELSGRSFHRLVKPT-KKV 155

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRIN 114
           S  A ++H +T + L+ +P F++I  +   F ++  +   +  A  D+ +        + 
Sbjct: 156 SSSAYRVHKLTSKVLERQPPFAAILPDLAAFLSDVRSGSTS-TAAGDIHYKGPGGTNNVE 214

Query: 115 KDPLDPSRIIDTLSIAR 131
           + PL       T+S++R
Sbjct: 215 RVPLSSGGAAATVSVSR 231



 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 95  IAHNAKFDVGFINAELQRINKDPL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
           IAHNA FD  F+     R   + +    S +  T+S+ R  +P    +L   C   GI  
Sbjct: 266 IAHNAAFDRNFLYQSALRNGWEVVWDKQSPLTCTMSMFRALYPECPTNLTKACSLAGIDA 325

Query: 153 SHRS-KHGALLDSHLLSDVYIKM 174
           + R  +H AL D+ L   ++I +
Sbjct: 326 AGREDRHDALQDAQLCGHLFIYL 348


>gi|317179729|dbj|BAJ57517.1| DNA polymerase III subunit epsilon [Helicobacter pylori F30]
          Length = 287

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GI  E   
Sbjct: 77  DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 133 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221


>gi|282598821|ref|YP_003359140.1| putative exonuclease [Clavibacter phage CMP1]
 gi|262212609|gb|ACY35945.1| putative exonuclease [Clavibacter phage CMP1]
          Length = 236

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 13/184 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M R +K+  +VFD ET+G+D +NDRI+    + L+D   T   F  +L   G      A 
Sbjct: 1   MPRVDKI--MVFDTETSGVDVENDRIV-TAFIGLMDPDGTMTEFHEWLIDPGIPIPEGAS 57

Query: 61  KLHGITDE--FLKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114
            +HGIT E    + +        E     D+ +  N   +  NA +D+  ++ EL+R   
Sbjct: 58  DIHGITTEKAHAEGRKDIDKALMEIATKLDYASRWNYPVVIMNAPYDLTILDRELRRHVG 117

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            K+   P+ ++DT  I ++ +   +    L  L + YG+ +   + H A  D  +   V 
Sbjct: 118 IKNFRAPNVVLDTFVIDKKLYTFRKGSRKLVDLARIYGVPVEENA-HDAQADCRMAGRVT 176

Query: 172 IKMM 175
           +K +
Sbjct: 177 LKQL 180


>gi|27383194|ref|NP_774723.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27356368|dbj|BAC53348.1| bll8083 [Bradyrhizobium japonicum USDA 110]
          Length = 304

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV------FLCPNGRKNSPEALK 61
           R +  D+ETTGLD   D I+EI  V   DYS   R F V      F  P GR   PE   
Sbjct: 46  RAVFIDLETTGLDPVADEIVEIAMVP-FDYSDDGRIFAVHESFARFRDP-GRPIPPEVSA 103

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           + GITD  +      +   +E   F  +  A  +AHN  FD  F
Sbjct: 104 MTGITDAMVAGA---AIEPAEIEAFLGDTAALVVAHNCSFDRRF 144


>gi|317181232|dbj|BAJ59018.1| DNA polymerase III subunit epsilon [Helicobacter pylori F32]
          Length = 287

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GI  E   
Sbjct: 77  DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 133 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221


>gi|268592614|ref|ZP_06126835.1| ribonuclease T [Providencia rettgeri DSM 1131]
 gi|291311752|gb|EFE52205.1| ribonuclease T [Providencia rettgeri DSM 1131]
          Length = 214

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    P AL   G
Sbjct: 20  VVIDVETGGFNAKTDGLLEIAAITLKMDKDGWLSMDETLHFHVEPFEGANLEPSALAFTG 79

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFI--NAELQRIN 114
           I  T+     + +  +  +IF          +   A  +AHNA FD  F+   AE   + 
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKVIRKGMKNTDCNRAIIVAHNANFDHSFVMNAAERAGLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI    +  HGAL D++  + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLVF--GQTILAKACVSAGIPFDGKQAHGALYDTNRTALLFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|209963909|ref|YP_002296824.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
 gi|209957375|gb|ACI98011.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
          Length = 212

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 14/170 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   + +      IG   + +  +  RT +  + P   + +P  + +HGI  E 
Sbjct: 8   LAIDFETA--NEQRASACSIGLCRV-ENGRVVRTAEYLIRPPELRFTPFTIAIHGIRPED 64

Query: 70  LKDKPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + D P F  I    WD      + A  +AHNA FD+  + A L        D   +  TL
Sbjct: 65  VVDAPEFPDI----WDAMRPELEGAVLLAHNASFDMSVLRAMLGTYGLAVPDHGYLC-TL 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             ARR  P   ++ LN L +++GI + H   H A  D+   + + ++ M 
Sbjct: 120 VAARRAWPDLEKHRLNHLARQFGIELEH---HRAGSDARACAAIALRAMA 166


>gi|300214468|gb|ADJ78884.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius CECT
           5713]
          Length = 929

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 13/168 (7%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRT---FQVFLCPNGRKNSPEALKLHGIT 66
           V D+ETTG     +D+II+       D+ ++N+    F   + P G     E  KL GI 
Sbjct: 9   VVDLETTGPKQDGSDKIIQFSC----DFVQSNKIVNHFSTLINP-GMPIPAEVKKLTGIK 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++  P F  +    +     QN  ++AHN  FD  F+++EL+R     L+   ++DT
Sbjct: 64  NKDVRYAPYFDEVAGTIYAML--QNTTFVAHNVNFDYSFLSSELERAGYPELELP-MMDT 120

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + + +  +P+  +       +Y + +SH   H A  D+   +++ I +
Sbjct: 121 VQLTQIIYPTLVSYRLIDVSKY-LQLSHIHPHKADSDTKATAELLINL 167


>gi|86130357|ref|ZP_01048957.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
 gi|85819032|gb|EAQ40191.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
          Length = 466

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 7/148 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTG     +RI E  AV L D    ++ F   + P  +   P    L GI D  +
Sbjct: 11  IIDVETTGKGINGNRITEFCAVRLKDGEIIDK-FTSLVNPE-QYIPPFITNLTGIDDAMV 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D P F  I     +    + A ++AHN  FD   I  E +R+    +   + + T+ ++
Sbjct: 69  EDAPLFEEIAQRVLEI--TEGAIFVAHNVNFDFNVIKGEFKRLGVSFV--RKKLCTVRLS 124

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK 157
           R+  P+  +  L +LC   GI +++R +
Sbjct: 125 RKLIPNLFSYSLGNLCASIGIPLNNRHR 152


>gi|308062811|gb|ADO04699.1| DNA polymerase III subunit epsilon [Helicobacter pylori Cuz20]
          Length = 287

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GI  E   
Sbjct: 77  DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 133 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221


>gi|330811888|ref|YP_004356350.1| exonuclease [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379996|gb|AEA71346.1| Putative exonuclease [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 203

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 17/173 (9%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65
           R  V D ETTG+  S + R  EI AV +L+  +    +Q  +  N     P  + +L GI
Sbjct: 3   RIAVIDFETTGITPSSSCRATEI-AVVMLEQGRIVDRYQSLM--NAGVRVPAFIEQLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  L+  PS   + +E  +F        +AHNA FD  F + EL RI +  L       
Sbjct: 60  SNAMLRSAPSAEKVMNEVNEFVG--ITPLLAHNAAFDQKFWDFELGRIKRTRLQ--NFAC 115

Query: 126 TLSIARRKHPSSRN----DLNSLCKRYGITISHR----SKHGALLDSHLLSDV 170
           +L +ARR  P++ N     LN+         +HR    ++  A L +HL S +
Sbjct: 116 SLLLARRLMPAAPNHKLGTLNTFAGLPHTGQAHRAMADAEMAANLTAHLASQL 168


>gi|254392979|ref|ZP_05008143.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|197706630|gb|EDY52442.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 240

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 21/159 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68
           + FD+ETTG D +  RI+    VE        R  + +L   G +   +A  +HGIT E 
Sbjct: 9   VGFDLETTGTDPREARIVTAAVVEARAGEPVRR--RTWLADPGVRIPAQASAIHGITSER 66

Query: 69  -FLKDKPS---FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---------RINK 115
              + +P+      + +E   ++  +    +A+NA FD+  + AE++         R+  
Sbjct: 67  AAAEGRPAREVADEVAAELCGYWA-RGVPVVAYNAAFDLSLLAAEIRRYGLPSLSDRLGG 125

Query: 116 DPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
            P  P  +ID  +I R   ++   +  L ++   YG+ +
Sbjct: 126 RPTGP--VIDPYTIDRAVDRYRKGKRTLEAVSAEYGVPL 162


>gi|41406411|ref|NP_959247.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|254773395|ref|ZP_05214911.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|41394760|gb|AAS02630.1| DnaQ [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 329

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    K  ++    L P      P    +HG+T   L
Sbjct: 19  VIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPG---VDPGPTHVHGLTAAML 75

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
           +D+P F+ I  +  +    +    +AHN  FD  F+ AE +    + P+D   ++ T+ +
Sbjct: 76  EDQPQFADIAGDVVEVLRGRT--LVAHNVAFDYAFLAAEAELAGIELPVD--TVMCTVEL 131

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR      N  L +L   +G+T   +  H A  D+ +L+ V    +
Sbjct: 132 ARRLDLGIDNLRLETLAAHWGVT--QQRPHDAFDDAMVLTGVLASAL 176


>gi|261343971|ref|ZP_05971616.1| ribonuclease T [Providencia rustigianii DSM 4541]
 gi|282568361|gb|EFB73896.1| ribonuclease T [Providencia rustigianii DSM 4541]
          Length = 214

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + K D ++EI A+ L +D   +   + T    + P  G    P AL   G
Sbjct: 20  VVIDVETGGFNPKTDGLLEIAAITLKMDNEGWLSIDETLHFHVEPFEGANLEPAALAFTG 79

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFI--NAELQRIN 114
           I  T+     + +  +  +IF          +   A  +AHNA FD  F+   AE   + 
Sbjct: 80  IDPTNPLRGAVSEYDALHAIFKTIRKGMKNTDCNRAIMVAHNANFDHSFVMNAAERSGLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI    +  HGAL D++  + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLVF--GQTILAKACVTAGIPFDGKQAHGALYDTNRTALLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|253700819|ref|YP_003022008.1| exonuclease RNase T and DNA polymerase III [Geobacter sp. M21]
 gi|251775669|gb|ACT18250.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M21]
          Length = 312

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 12/125 (9%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS- 56
           ++RK   R    +  D ETTGLD K D++IE+G V      +T   F++    +G ++  
Sbjct: 43  LVRKAPERCQVALCLDTETTGLDYKRDKVIELGIVAFEYDPETGEIFRISERYSGFEDPG 102

Query: 57  ---PEALK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
              PE +K + GI+D+ ++ +    +    F +   E++   IAHNA FD  F+ A    
Sbjct: 103 VPIPEEVKEITGISDDMVRGQ----AFDDPFINLLAEKSHLVIAHNAAFDRKFVEARFPA 158

Query: 113 INKDP 117
             K P
Sbjct: 159 FTKLP 163


>gi|146386891|pdb|2IS3|A Chain A, Crystal Structure Of Escherichia Coli Rnase T
 gi|146386892|pdb|2IS3|B Chain B, Crystal Structure Of Escherichia Coli Rnase T
 gi|146386893|pdb|2IS3|C Chain C, Crystal Structure Of Escherichia Coli Rnase T
 gi|146386894|pdb|2IS3|D Chain D, Crystal Structure Of Escherichia Coli Rnase T
          Length = 215

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKXDEQGWLXPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112
           I D    D+ + S  +    + F              A  +AHNA FD  F  A  +R  
Sbjct: 80  I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIXVAHNANFDHSFXXAAAERAS 137

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + ++P  P    DT ++A       +  L+  C+  G        H AL D+   + ++ 
Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGXDFDSTQAHSALYDTERTAVLFC 195

Query: 173 KMM 175
           +++
Sbjct: 196 EIV 198


>gi|288819191|ref|YP_003433539.1| DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|46849522|dbj|BAD17850.1| putative DNA polymerase III epsilon subunit [Hydrogenobacter
           thermophilus]
 gi|288788591|dbj|BAI70338.1| DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|308752773|gb|ADO46256.1| DNA polymerase III, epsilon subunit [Hydrogenobacter thermophilus
           TK-6]
          Length = 191

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 8/167 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIETTG D ++  IIEI  V +     T+R F   + P G       +KL GIT+  
Sbjct: 11  VSIDIETTGFDEESSDIIEIACVRVEGCIITDR-FSTLVNP-GYLLPDRIVKLTGITNAM 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  KP+   +   F  F  +  +  + H+ + D+ FI+   + +         I  TL++
Sbjct: 69  IVGKPNIYEVLPHFLRFVGD--SIIVGHHVEKDMAFIDKAYRVLYGKKFKHPHIC-TLNL 125

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           AR   P   R  L  L   +   I +R  H AL D+   + ++I+++
Sbjct: 126 ARNILPDLKRYSLKDLADHF--NIRYRRLHRALDDAETTAYLFIELL 170


>gi|307564574|ref|ZP_07627114.1| exonuclease [Prevotella amnii CRIS 21A-A]
 gi|307346732|gb|EFN92029.1| exonuclease [Prevotella amnii CRIS 21A-A]
          Length = 287

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 9/141 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGLD  NDRII+I  +++    K  R   +F+ P G++   E + L GIT+E 
Sbjct: 10  IVFDLETTGLDLVNDRIIQISYIKVYPDGKEERE-NIFINP-GKQIPEEVIALTGITNED 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127
           +   P+F     E    F     ++   N+ +FD+  +  E  R   +      +++D  
Sbjct: 68  VAKAPTFKEKGKELSLKFT--GCDFAGFNSNRFDIPMLAEEFLRAGIEFDFSKCQLVDAQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
           SI    H   R +L +  + Y
Sbjct: 126 SIF---HKMERRNLAAAYEFY 143


>gi|37526494|ref|NP_929838.1| ribonuclease T [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|54036329|sp|Q7N3W0|RNT_PHOLL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|36785925|emb|CAE14977.1| ribonuclease T [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 217

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI AV L +D   +     +    + P  G    P AL+  G
Sbjct: 20  VVIDVETGGFNAKTDALLEIAAVTLEMDGEGWLTPGESLHFHIEPFEGANLEPAALEFTG 79

Query: 65  ITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF          +   A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPLNPLRGAVSEYEALHAIFKMVRKGIKNNHCNRAIIVAHNANFDHSFVMAATERTGLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++        +  L   C   GI   +   H AL D+   ++++ +M
Sbjct: 140 RNPFHPFATFDTAALGGLV--LGQTILAKACITAGIPFDNNQAHSALYDTDRTAELFCEM 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|308125815|ref|ZP_05777630.2| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|308111533|gb|EFO49073.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
          Length = 247

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 17/186 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL++++D I+ IG V   +D  + + +    + PN R+ + E++ +HGITD 
Sbjct: 58  VSVDFETTGLNAEDDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITDS 116

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127
            +K+ P  + I  E  D    +    + H    +  F  NA L  I +    P  ++DTL
Sbjct: 117 EVKNAPQLTQILGEILDALAGKVV--LVHYKNIERQFFYNALLNTIGEGIQFP--VVDTL 172

Query: 128 ----SIARRKHPSSRNDLNSLCKRYG-ITISH-RSKHG--ALLDSHLLSDVYIKMMVGGS 179
               ++ RR+     N L    K+ G + + H R ++G  A    H L+D      +  +
Sbjct: 173 DIEYALQRRECSGIWNKLKG--KKPGSVRLGHARERYGLPAYQPHHALTDALATAELFQA 230

Query: 180 QINFGF 185
           Q+ + F
Sbjct: 231 QLQYHF 236


>gi|313768210|ref|YP_004061890.1| hypothetical protein MpV1_007c [Micromonas sp. RCC1109 virus MpV1]
 gi|312598906|gb|ADQ90930.1| hypothetical protein MpV1_007c [Micromonas sp. RCC1109 virus MpV1]
          Length = 443

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 14/120 (11%)

Query: 7   MRKIVFDIETTGLDSK-------------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53
           M+ I FD ET+GL                + R + + A       +   TF   + PN  
Sbjct: 4   MQYIAFDFETSGLPEGRRPVTPETLHQFDSCRAVSLSAARFSSRGRLVDTFDAIVYPNDF 63

Query: 54  KNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           + S  ++ +HGIT +   ++   F+ +F +F  F   +    +AHNAKFD   + +E+ R
Sbjct: 64  QISQGSIDVHGITQQRAEREGRPFTEVFLDFVRFIGPRTTTMVAHNAKFDTSVLRSEMIR 123


>gi|320096178|ref|ZP_08027770.1| DNA polymerase III PolC [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319976891|gb|EFW08642.1| DNA polymerase III PolC [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 210

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 11/180 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL    + I EIGA+ +      +  F+  + P+     P   K+ GIT + 
Sbjct: 20  LVVDVETTGLGRACE-ITEIGALRMRGTQVVDE-FEELVRPSA-PIPPFIEKMTGITTDM 76

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +       +++  F  +          +AHNA FD+GF+ A   R    P      +DTL
Sbjct: 77  VAGADPVQAVYPRFAAWAGAGAPGRVLVAHNADFDMGFL-ARAARACSMPWRTPPSVDTL 135

Query: 128 SIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           S+AR   P    + + L ++ + +    +    H AL D+    +V   +    ++  FG
Sbjct: 136 SLARLALPRPVVANHRLGTVARHFRTATA--PGHRALGDARATGEVLCGLAGLAAEAGFG 193


>gi|315612858|ref|ZP_07887769.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sanguinis ATCC 49296]
 gi|315314968|gb|EFU63009.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sanguinis ATCC 49296]
          Length = 830

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 20/180 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKN 55
           M+     R +V D+E T   SK  +II++G V     E++D   T+      + P+   +
Sbjct: 1   MMNARNDRYVVVDLEATSTGSKA-KIIQVGIVVIENGEIIDQYATD------VNPHEPLD 53

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           S    +L G+TD+ L   P FS +  + ++    ++  ++AHN +FD   + AE      
Sbjct: 54  S-HIKELTGLTDQRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLL-AEFLFFEG 109

Query: 116 DPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             L   R +DT+ +A+  +P   + +L  LC+  GI + H   H AL D+   +++ + M
Sbjct: 110 YELRTPR-VDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYM 166


>gi|150025497|ref|YP_001296323.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86]
 gi|149772038|emb|CAL43514.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 256

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 27/117 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS------------PEA 59
           FD+ETTG+D   DRI+EI              F++F  PNG K S             + 
Sbjct: 12  FDLETTGIDIGKDRIVEISV------------FKIF--PNGNKESKTWLVNPTIPIPAQT 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
             +HGITDE + ++P+F+ + S+ ++   + +     ++ +FD+  +  EL R   D
Sbjct: 58  TAVHGITDEKVANEPTFNELASQVYNMIKDSDLAGF-NSDRFDIPLLAEELLRAGVD 113


>gi|289550764|ref|YP_003471668.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180296|gb|ADC87541.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis
           HKU09-01]
          Length = 893

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG     D II+IG +  +   K   T+   +  +     P    L  I ++ L
Sbjct: 8   VVDLETTGNQLDYDEIIQIG-ITFVRGQKIVGTYHSMINTDVEI-PPFIQALTSIEEDML 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K  P F  +  + +     +++ ++AHN  FD+ FI    +R N     P ++IDT+ + 
Sbjct: 66  KQAPYFHEVAEDVYK--QLKDSVFVAHNVSFDLTFIKKAFKR-NHIHFQPKKVIDTVELF 122

Query: 131 RRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           +   P+ ++  L+ L + + I +  +HR+   A   + L+
Sbjct: 123 KIAFPTDKSYQLSELAEAHHIPLDNAHRADEDATTTAKLM 162


>gi|157737501|ref|YP_001490184.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|157699355|gb|ABV67515.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
          Length = 247

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 34/186 (18%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD ETTG  ++ DR+I+ GA+ ++D       F   LC        EA+++H IT + 
Sbjct: 5   VLFDTETTGA-AQEDRVIQFGAM-IVDNKGKVEAFDE-LCSAPIPIKLEAMEVHNITPDL 61

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125
           L++KP   ++ + F+    E N++    IAHN  FD       L  I K+  + S ++ID
Sbjct: 62  LENKP--KAVETNFYKRLEELNSDENYLIAHNINFD-------LDMIKKEGFENSYKLID 112

Query: 126 TLSIA----------RRKHPSSRNDLNSL----CKRYGITISHRSKHGALLDSHLLSDVY 171
           TL  A          R ++     DL         +YGITI     H A+ D  L+  ++
Sbjct: 113 TLRCAKHLFSDLPYHRLQYLRYALDLYKFEENEASKYGITI---KAHDAIGDV-LVMKLF 168

Query: 172 IKMMVG 177
           +  +VG
Sbjct: 169 LSKLVG 174


>gi|315637226|ref|ZP_07892446.1| exonuclease [Arcobacter butzleri JV22]
 gi|315478498|gb|EFU69211.1| exonuclease [Arcobacter butzleri JV22]
          Length = 247

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 34/186 (18%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD ETTG  ++ DR+I+ GA+ ++D       F   LC        EA+++H IT + 
Sbjct: 5   VLFDTETTGA-AQEDRVIQFGAM-IVDNKGKVEAFDE-LCSAPIPIKLEAMEVHNITPDL 61

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125
           L++KP   ++ + F+    E N++    IAHN  FD       L  I K+  + S ++ID
Sbjct: 62  LENKP--KAVETNFYKRLEELNSDENYLIAHNINFD-------LDMIKKEGFENSYKLID 112

Query: 126 TLSIA----------RRKHPSSRNDLNSL----CKRYGITISHRSKHGALLDSHLLSDVY 171
           TL  A          R ++     DL         +YGITI     H A+ D  L+  ++
Sbjct: 113 TLRCAKHLFSDLPYHRLQYLRYALDLYKFEENEASKYGITI---KAHDAIGDV-LVMKLF 168

Query: 172 IKMMVG 177
           +  +VG
Sbjct: 169 LSKLVG 174


>gi|255022249|ref|ZP_05294243.1| Ribonuclease T [Acidithiobacillus caldus ATCC 51756]
 gi|254968305|gb|EET25873.1| Ribonuclease T [Acidithiobacillus caldus ATCC 51756]
          Length = 211

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 28/186 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN---------GRKNSPEAL 60
           +V D+E+ G ++    ++EI A+ +     T+   Q  L P          G +  P AL
Sbjct: 15  VVVDVESAGFEAHRHALLEIAAIVI-----THADGQWQLGPRHHFHVEPFAGAELDPAAL 69

Query: 61  KLHGITDEF------LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQ 111
             +GI D +      L +   F +++        E +   A  + HNA FD+ F++A  +
Sbjct: 70  AFNGI-DPYQPLRGALPEAEVFGTLYRALRKAVKEAHCRRAVLVGHNAHFDLSFLHAAEK 128

Query: 112 --RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             R+   P  P  +IDT+S+A      +   L    ++ G+    R  H AL D+   ++
Sbjct: 129 RLRLKNSPFHPFSVIDTVSLAALA--LAETVLAKAVQKAGLAWDGREAHSALYDAERTAE 186

Query: 170 VYIKMM 175
           ++  ++
Sbjct: 187 LFCWIV 192


>gi|77407162|ref|ZP_00784150.1| exonuclease, putative [Streptococcus agalactiae H36B]
 gi|77174231|gb|EAO77112.1| exonuclease, putative [Streptococcus agalactiae H36B]
          Length = 124

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           K R I FDIETTGL+S+ DRI+E+GAV L +  K   +++  +  N + N S +  +++ 
Sbjct: 50  KNRFIAFDIETTGLNSQQDRIVEVGAV-LFENGKVVDSYESLV--NAKVNISADVTRINN 106

Query: 65  ITDEFLKDKPS 75
           IT+  +K+ PS
Sbjct: 107 ITNRMIKNAPS 117


>gi|313144535|ref|ZP_07806728.1| DNA polymerase III [Helicobacter cinaedi CCUG 18818]
 gi|313129566|gb|EFR47183.1| DNA polymerase III [Helicobacter cinaedi CCUG 18818]
          Length = 254

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 13/170 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDE 68
           +  DIET G   ++  IIEIGA+ + + S+   +F+ ++  P   +N  E   L GI  E
Sbjct: 74  VFVDIETNGAKPQSSEIIEIGALRVKN-SQILESFESYVYAPFVPENITE---LTGIRQE 129

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIIDTL 127
            +++ P    +   F +F       ++AHN  FD  F++  L++      L+P   + T+
Sbjct: 130 DIQNAPQSKEVLRAFREFLG--GGVFVAHNVNFDFSFLDYHLRQNGLFGLLNPK--LCTI 185

Query: 128 SIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMM 175
            +A++   S R  L+ L +  GI   +SHR+   A L S  + ++ I M+
Sbjct: 186 DLAKKTILSKRYALSYLNEFLGINTAMSHRAYADA-LTSFRIFEIAISML 234


>gi|317471044|ref|ZP_07930419.1| exonuclease [Anaerostipes sp. 3_2_56FAA]
 gi|316901485|gb|EFV23424.1| exonuclease [Anaerostipes sp. 3_2_56FAA]
          Length = 234

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 13/157 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL  + D++IEIGAV++ +  K    +   + P  R+ S   ++L GIT + 
Sbjct: 5   VAFDLETTGLSVEEDQVIEIGAVKVKN-GKIAGKYNCIIYPE-REVSDFIIRLTGITRKM 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L            F  F   +    + HN  FD  F+    +R           +DTL  
Sbjct: 63  LDGGIPMREGVEGFLAF--SEGYPVLGHNLMFDYRFMKTAAKRFRYAFEKEG--VDTLRA 118

Query: 130 AR---RKHPSSRNDLNSLCKRYGIT--ISHRSKHGAL 161
           AR   R   S +  L+SLC+ Y      +HR+   AL
Sbjct: 119 ARLLLRGLESKK--LSSLCEHYHYVNQAAHRAYDDAL 153


>gi|297380606|gb|ADI35493.1| DNA polymerase III polC-type [Helicobacter pylori v225d]
          Length = 287

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 92/214 (42%), Gaps = 17/214 (7%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GI  E   
Sbjct: 77  DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 133 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQINFGFKT 187
           R   S R  L+ L     +GI +SHR+   AL    L     + +   +  +     F  
Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADALASYKLFEICLLNLPSYIKTTMDLIDFSK 249

Query: 188 NEDRFFK-----EEKKTVPNISLLKRDKPLFTRI 216
             +   K       ++T+P  SL +R K L   I
Sbjct: 250 CANTLIKRPPRARHQETLPPFSLFERTKGLLNII 283


>gi|255532547|ref|YP_003092919.1| DNA polymerase III subunit epsilon [Pedobacter heparinus DSM 2366]
 gi|255345531|gb|ACU04857.1| DNA polymerase III, epsilon subunit [Pedobacter heparinus DSM 2366]
          Length = 456

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 7/155 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V DIETTG  +  + I EI ++ + D  +    ++  + P G++       L GI+
Sbjct: 1   MLYAVVDIETTGGFASGNGITEI-SILVHDGREVVEAYETLINP-GQEIPAYIETLTGIS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E +   P F  + +E +   +++   ++AHN  FD  FI   L     D     + + T
Sbjct: 59  NEMVVTAPLFGGVAAEIYAMLHDKI--FVAHNVNFDFSFIKHHLSLSGYDL--RCKKLCT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           + ++R+  P  S   L  LC    I I  R + G 
Sbjct: 115 VRLSRKLFPGYSSYSLGKLCNALNIAIHDRHRAGG 149


>gi|229060993|ref|ZP_04198347.1| exonuclease [Bacillus cereus AH603]
 gi|228718362|gb|EEL69996.1| exonuclease [Bacillus cereus AH603]
          Length = 221

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 8/102 (7%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N+ + ++ D ETTGL  + D+IIEI  ++L       +     L         EA  +HG
Sbjct: 61  NRDQFVILDTETTGLTLR-DQIIEISVIDL-----AGKILLDSLVKPTTNIPAEAASIHG 114

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           IT+E + D PS+++I+ E  +         + +NA+FD+G I
Sbjct: 115 ITNEMVHDAPSWTAIYKELREV--TVGKTLLIYNAEFDLGMI 154


>gi|167747300|ref|ZP_02419427.1| hypothetical protein ANACAC_02014 [Anaerostipes caccae DSM 14662]
 gi|167653278|gb|EDR97407.1| hypothetical protein ANACAC_02014 [Anaerostipes caccae DSM 14662]
          Length = 234

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 13/157 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL  + D++IEIGAV++ +  K    +   + P  R+ S   ++L GIT + 
Sbjct: 5   VAFDLETTGLSVEEDQVIEIGAVKVKN-GKIAGKYNCIIYPE-REVSDFIIRLTGITRKM 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L            F  F   +    + HN  FD  F+    +R           +DTL  
Sbjct: 63  LDGGIPMREGVEGFLAF--SEGYPVLGHNLMFDYRFMKTAAKRFRYAFEKEG--VDTLRA 118

Query: 130 AR---RKHPSSRNDLNSLCKRYGIT--ISHRSKHGAL 161
           AR   R   S +  L+SLC+ Y      +HR+   AL
Sbjct: 119 ARLLLRGLESKK--LSSLCEHYHYVNQAAHRAYDDAL 153


>gi|325297487|ref|YP_004257404.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
 gi|324317040|gb|ADY34931.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
          Length = 183

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 7/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ET     K   I E G + ++   +  +T    + P G + S   +++HGI    
Sbjct: 7   IAIDFETA--TGKRASICEAG-ICVVRNGEVTKTRSWLVRPQGNRYSYWNMQIHGIRPND 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
             D P F  +++E  ++  +     +AHNA FDVG I   L+    +  D +    +L  
Sbjct: 64  TVDSPEFPEVWAEISEYLKDIPI-LVAHNAAFDVGCIRHSLELYGMEKPDITYYC-SLRA 121

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           AR+ +    N L+ LC ++   I +   H A  D+ + + ++++
Sbjct: 122 ARKLYDFGCNSLDYLCDQF--KIPYGRHHRAGDDAEMCARLFLR 163


>gi|261840222|gb|ACX99987.1| DNA polymerase III subunit epsilon [Helicobacter pylori 52]
          Length = 323

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GI  E   
Sbjct: 113 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYITELTGIAYEDTL 168

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 169 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 225

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 226 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 257


>gi|199597302|ref|ZP_03210733.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus rhamnosus HN001]
 gi|199591818|gb|EDY99893.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus rhamnosus HN001]
          Length = 180

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P+ +++HGIT + ++D+PSF  ++     F+        AHNA FDV  +   L R    
Sbjct: 47  PQNIRIHGITPDMVQDQPSFDRVWPHIQMFYTPGRI-VTAHNAPFDVSVLRLTLDRYGIA 105

Query: 117 PLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                ++IDT+  +R+  P   N  L+++     I + H   H AL DS+  + + I
Sbjct: 106 -APRYQVIDTVKTSRQFLPKLPNHRLDTVSAALKIPLEHH--HNALADSYACARILI 159


>gi|70726060|ref|YP_252974.1| hypothetical protein SH1059 [Staphylococcus haemolyticus JCSC1435]
 gi|68446784|dbj|BAE04368.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 219

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 11/156 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ET   + K   I  +G V++++ ++   +F   + P     S   +++HGIT E 
Sbjct: 42  IALDFETA--NGKRTSICSVGMVKVVN-NEIVESFYTLVNPFDYF-SQTNIEVHGITPED 97

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLS 128
           + D PSF  +F     F ++     +AHNA FD+  ++  L+++N +   PS I   +  
Sbjct: 98  VIDAPSFEYVFPYMMQFIDK--LPVVAHNAAFDMNVLHQSLKQLNIE--TPSMIYFCSYQ 153

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +A+R   + R  L  L K Y +       H AL D+
Sbjct: 154 LAKRTIDAYRYGLKHLMKHYKLDF--HGHHDALNDA 187


>gi|157961523|ref|YP_001501557.1| exonuclease RNase T and DNA polymerase III [Shewanella pealeana
           ATCC 700345]
 gi|157846523|gb|ABV87022.1| Exonuclease RNase T and DNA polymerase III [Shewanella pealeana
           ATCC 700345]
          Length = 228

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 83/170 (48%), Gaps = 19/170 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +++  +  D+E TGL+S+ D+I+ IG + + +   + + +  + +  +G     ++  +H
Sbjct: 41  SQLPLMAVDLEMTGLNSQFDQILSIGLIPIRNGLLQVSHSKHLLVSIDGSVG--DSAVIH 98

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI D  L    + S   +  W     Q    +AH+A  D+ F+ AE+QR     +     
Sbjct: 99  GIVDNQLTQ--AVSPKLAMAWFLEQTQGHVLVAHHAPLDLCFLKAEIQRCYGQTIQFVA- 155

Query: 124 IDTLSIARR---------KHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           IDT+++ +R         K  S R  L++  +RYG+ +   + H A +D+
Sbjct: 156 IDTMAVEKRRLLMQIDVIKEGSLR--LDACRQRYGLPV--YAAHNAAIDA 201


>gi|104780415|ref|YP_606913.1| ribonuclease T [Pseudomonas entomophila L48]
 gi|166200016|sp|Q1IE06|RNT_PSEE4 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|95109402|emb|CAK14102.1| ribonuclease T [Pseudomonas entomophila L48]
          Length = 224

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV + +D   +     T+   + P  G      AL+  G
Sbjct: 32  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFYRVEPFEGANIEAAALEFTG 91

Query: 65  I-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQR--IN 114
           I  D  L+   S  S  ++ +    +       + A  + HN+ FD+GF+NA + R  I 
Sbjct: 92  IKLDHPLRMAVSEESALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARNDIK 151

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+   I    R  H A  D+   ++++  +
Sbjct: 152 RNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTAELFCGI 209

Query: 175 M 175
           +
Sbjct: 210 V 210


>gi|33596994|ref|NP_884637.1| putative exonuclease [Bordetella parapertussis 12822]
 gi|33566445|emb|CAE37698.1| putative exonuclease [Bordetella parapertussis]
          Length = 247

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 68/156 (43%), Gaps = 10/156 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD-E 68
           +V D+ETTGL      I+E  AV +    +  R F   +  +GR   P   +L GIT  E
Sbjct: 81  VVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVRTDGRV-PPFISRLTGITQAE 139

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +D       F +F DF   +      HNA FD  F+ A   R    P + ++   TL 
Sbjct: 140 VERDGVPVRQAFGDFLDFI--EGGPLFFHNASFDRRFLQAAADRTGL-PFE-AQTHCTLM 195

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163
           +AR+  P    + LN L +  G   +    H AL D
Sbjct: 196 LARQAWPELPSHKLNVLARHLG---ASEPTHRALAD 228


>gi|28898498|ref|NP_798103.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260879545|ref|ZP_05891900.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260894980|ref|ZP_05903476.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|28806716|dbj|BAC59987.1| putative DNA polymerase III, epsilon subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308086038|gb|EFO35733.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308093371|gb|EFO43066.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
          Length = 248

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 17/186 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL++++D I+ IG V   +D  + + +    + PN R+ + E++ +HGITD 
Sbjct: 59  VSVDFETTGLNAEDDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITDS 117

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127
            +K+ P  + I  E  D    +    + H    +  F  NA L  I +    P  ++DTL
Sbjct: 118 EVKNAPQLTQILGEILDALAGKVV--LVHYKNIERQFFYNALLNTIGEGIQFP--VVDTL 173

Query: 128 ----SIARRKHPSSRNDLNSLCKRYG-ITISH-RSKHG--ALLDSHLLSDVYIKMMVGGS 179
               ++ RR+     N L    K+ G + + H R ++G  A    H L+D      +  +
Sbjct: 174 DIEYALQRRECSGIWNKLKG--KKPGSVRLGHARERYGLPAYQPHHALTDALATAELFQA 231

Query: 180 QINFGF 185
           Q+ + F
Sbjct: 232 QLQYHF 237


>gi|301633239|gb|ADK86793.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           pneumoniae FH]
          Length = 1443

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 9/165 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           ++FDIETTGL  + D +IE   +++    +  R  Q FL  +G    P A+ ++  IT  
Sbjct: 409 VIFDIETTGLHGRYDSVIEFAGIKVKHNREVER-MQFFLKIDG--PLPAAVTEITKITQA 465

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
            L+D     +   +   + +      +AHN   FD+ F+  + ++ N  PL  + +IDTL
Sbjct: 466 QLEDGMEQQAGLEKLRAWLD--GCVMVAHNGLSFDLPFLQTQFEKYNIAPLT-NPLIDTL 522

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +++   +P  + + L+++C +          H A  D+  L  V+
Sbjct: 523 ALSWALNPGFASHTLSNICAKLKFDFDDERLHRADYDTQALKKVF 567


>gi|289663085|ref|ZP_06484666.1| ribonuclease T [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 211

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 29/170 (17%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCPN-GRKNSPEALKLH 63
            +V D+ET G D     ++EI  V + +D +       T    L P  G +  P++L++ 
Sbjct: 25  PVVVDVETGGFDWNKHALLEIACVPIEMDAAGRFFPGDTASAHLVPAPGLEIDPKSLEIT 84

Query: 64  GITDE----FLK-DKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +    F K +K +   +F+        +  Q A  + HNA FD+ F+NA + R+  
Sbjct: 85  GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 144

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++P  P  + DT+++A                 YG T+  R+   A LD
Sbjct: 145 KRNPFHPFSVFDTVTLAGVA--------------YGQTVLARAAQAAGLD 180


>gi|58337449|ref|YP_194034.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM]
 gi|58254766|gb|AAV43003.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM]
          Length = 927

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 15/176 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           NK    V D+ETTG   +N   II+ G   ++   K  +T+   + P+ R+     + L 
Sbjct: 6   NKDTFAVVDLETTGTQRENGHHIIQFGCA-IIKNMKVVKTYSFLINPH-REIPQSVVNLT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++E ++ +  F     +       Q+  ++AHN  FD+ F+N EL +   D L  ++ 
Sbjct: 64  GISNEDVQKQKDFDYYAPKIVSIL--QDTVFVAHNVDFDLPFLNYELTQHGYDAL-TNKA 120

Query: 124 IDTLSIARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IDT+ +A+   P+       DL S  K     I H + H A  D++  + + I+++
Sbjct: 121 IDTVELAKIAFPTLPSYKLGDLTSQLK-----IKHLNPHKADSDAYGTAVLLIEII 171


>gi|33600836|ref|NP_888396.1| putative exonuclease [Bordetella bronchiseptica RB50]
 gi|33568436|emb|CAE32348.1| putative exonuclease [Bordetella bronchiseptica RB50]
          Length = 247

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 68/156 (43%), Gaps = 10/156 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD-E 68
           +V D+ETTGL      I+E  AV +    +  R F   +  +GR   P   +L GIT  E
Sbjct: 81  VVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVRTDGRV-PPFISRLTGITQAE 139

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +D       F +F DF   +      HNA FD  F+ A   R    P + ++   TL 
Sbjct: 140 VERDGVPVRQAFGDFLDFI--EGGPLFFHNASFDRRFLQAAADRTGL-PFE-AQTHCTLM 195

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163
           +AR+  P    + LN L +  G   +    H AL D
Sbjct: 196 LARQAWPELPSHKLNVLARHLG---ASEPTHRALAD 228


>gi|237731384|ref|ZP_04561865.1| ribonuclease T [Citrobacter sp. 30_2]
 gi|226906923|gb|EEH92841.1| ribonuclease T [Citrobacter sp. 30_2]
          Length = 215

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +     A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPNNPLRGAVSEYDALHAIFKMVRKGIKDSGCNRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLS--LGQTVLSKACLAAGMEFDGNQAHSALYDTERTAVLFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|72381899|ref|YP_291254.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. NATL2A]
 gi|72001749|gb|AAZ57551.1| DNA polymerase III, epsilon subunit [Prochlorococcus marinus str.
           NATL2A]
          Length = 292

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGLD++ND  +E+G++     S++    Q FL P    N   A K++ I  E 
Sbjct: 69  LILDTETTGLDNENDDCLEVGSILFNVKSRSVLAQQSFLLPVEINN---AEKINNIPAEI 125

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIIDTLS 128
            +     S     F       N   +AHN++FD  +    +L +I K P   S  +D ++
Sbjct: 126 TRLPQPLSEAIKYFESLVRVSNV-IVAHNSEFDKKWFGLKKLPQIEK-PWICS--MDDIT 181

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +   +R  +  L   YG+ + +   H AL D   L++V+I+
Sbjct: 182 WPADRQLKTRPSVRDLALAYGVPVWN--AHRALTDCIYLAEVFIR 224


>gi|13507773|ref|NP_109722.1| DNA polymerase III PolC [Mycoplasma pneumoniae M129]
 gi|2494192|sp|P75080|DPO3_MYCPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1673778|gb|AAB95768.1| DNA polymerase III (dnaE) alpha chain [Mycoplasma pneumoniae M129]
          Length = 1443

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 9/165 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           ++FDIETTGL  + D +IE   +++    +  R  Q FL  +G    P A+ ++  IT  
Sbjct: 409 VIFDIETTGLHGRYDSVIEFAGIKVKHNREVER-MQFFLKIDG--PLPAAVTEITKITQA 465

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
            L+D     +   +   + +      +AHN   FD+ F+  + ++ N  PL  + +IDTL
Sbjct: 466 QLEDGMEQQAGLEKLRAWLD--GCVMVAHNGLSFDLPFLQTQFEKYNIAPLT-NPLIDTL 522

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +++   +P  + + L+++C +          H A  D+  L  V+
Sbjct: 523 ALSWALNPGFASHTLSNICAKLKFDFDDERLHRADYDTQALKKVF 567


>gi|317182753|dbj|BAJ60537.1| DNA polymerase III subunit epsilon [Helicobacter pylori F57]
          Length = 287

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GI  E   
Sbjct: 77  DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 133 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 190 RAILSIRYSLSFLKELLGFGIEVSHRAYADAL 221


>gi|289670069|ref|ZP_06491144.1| ribonuclease T [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 211

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 29/170 (17%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCPN-GRKNSPEALKLH 63
            +V D+ET G D     ++EI  V + +D +       T    L P  G +  P++L++ 
Sbjct: 25  PVVVDVETGGFDWNKHALLEIACVPIEMDAAGRFFPGDTASAHLVPAPGLEIDPKSLEIT 84

Query: 64  GITDE----FLK-DKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +    F K +K +   +F+        +  Q A  + HNA FD+ F+NA + R+  
Sbjct: 85  GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 144

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++P  P  + DT+++A                 YG T+  R+   A LD
Sbjct: 145 KRNPFHPFSVFDTVTLAGVA--------------YGQTVLARAAQAAGLD 180


>gi|91202954|emb|CAJ72593.1| strongly similar DNA polymerase epsilon subunit (3'-5' exonuclease)
           [Candidatus Kuenenia stuttgartiensis]
          Length = 204

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 6/129 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ET   ++K   +  +G   + + +   RT    + P      P +  +HGI+
Sbjct: 1   MKCVAIDFETA--NAKRSSVCSLGLAIIEEQTIVKRT-SWLIRPPELYFDPFSTYIHGIS 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + ++DKP F  ++ E + F   + +  +AHNA FD+  +   L  + K P  P     T
Sbjct: 58  AKDVEDKPEFYQLWDEIFPFL--EGSYLVAHNASFDMSVLCCILD-VYKIPYPPLNYFCT 114

Query: 127 LSIARRKHP 135
           L+IA+R  P
Sbjct: 115 LAIAKRVWP 123


>gi|118463087|ref|YP_879676.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104]
 gi|118164374|gb|ABK65271.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104]
          Length = 329

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    K  ++    L P      P    +HG+T   L
Sbjct: 19  VIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPG---VDPGPTHVHGLTAAML 75

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
           +D+P F+ I  +  +    +    +AHN  FD  F+ AE +    + P+D   ++ T+ +
Sbjct: 76  EDQPQFADIAGDVVEVLRGRT--LVAHNVAFDYAFLAAEAELAGIELPVD--TVMCTVEL 131

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR      N  L +L   +G+T   +  H A  D+ +L+ V    +
Sbjct: 132 ARRLDLGIDNLRLETLAAYWGVT--QQRPHDAFDDAMVLTGVLASAL 176


>gi|46402125|ref|YP_006619.1| Gp39 [Klebsiella phage phiKO2]
 gi|40218269|gb|AAR83055.1| Gp39 [Klebsiella phage phiKO2]
          Length = 202

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 40/196 (20%)

Query: 1   MIRKNKMRK--IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M+  N +R   ++ D ETTGL    D IIEI  + +      N      L    R   PE
Sbjct: 11  MMMANWLRSDHVIIDTETTGL-MDFDEIIEITIINMRGEILLNS-----LVKPSRPIPPE 64

Query: 59  ALKLHGITDEFLKDKPSFSSIFSE----FWDFFNEQNAEWIAHNAKFDVGF-INAELQRI 113
           A K++ IT+E + D P++S +F       W +      +W+A N+ FD    + + L+  
Sbjct: 65  ATKINHITNEMVADAPTWSDVFPAVLKIIWKY------KWLAWNSSFDARLMVQSCLKTW 118

Query: 114 NKDPLDPSRIIDTLSIARRKHPSS-------------------RNDLNSLCKRYGITISH 154
             D L P RI   +     +H  +                   R  L +   R+G++ + 
Sbjct: 119 FFDDLKPHRITSIIMAIETRHIDAKAVYDQWYGEFDEKRKNFKRQSLATAAARHGVSTA- 177

Query: 155 RSKHGALLDSHLLSDV 170
              H AL D  ++  V
Sbjct: 178 -GAHRALADCLMILGV 192


>gi|157145913|ref|YP_001453232.1| ribonuclease T [Citrobacter koseri ATCC BAA-895]
 gi|166228562|sp|A8AH33|RNT_CITK8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|157083118|gb|ABV12796.1| hypothetical protein CKO_01664 [Citrobacter koseri ATCC BAA-895]
          Length = 215

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++E+ A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +     A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPSNPLRGAVSEYDALHAIFKMVRKGIKDSGCNRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGTQAHSALYDTERTAVLFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|328468890|gb|EGF39850.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
          Length = 248

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 17/186 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL++++D I+ IG V   +D  + + +    + PN R+ + E++ +HGITD 
Sbjct: 59  VSVDFETTGLNAEDDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITDS 117

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127
            +K+ P  + I  E  D    +    + H    +  F  NA L  I +    P  ++DTL
Sbjct: 118 EVKNAPQLTQILGEILDALAGKVV--LVHYKNIERQFFYNALLNTIGEGIQFP--VVDTL 173

Query: 128 ----SIARRKHPSSRNDLNSLCKRYG-ITISH-RSKHG--ALLDSHLLSDVYIKMMVGGS 179
               ++ RR+     N L    K+ G + + H R ++G  A    H L+D      +  +
Sbjct: 174 DIEYALQRRECSGIWNKLKG--KKPGSVRLGHARERYGLPAYQPHHALTDALATAELFQA 231

Query: 180 QINFGF 185
           Q+ + F
Sbjct: 232 QLQYHF 237


>gi|326800451|ref|YP_004318270.1| exonuclease RNase T and DNA polymerase III [Sphingobacterium sp.
           21]
 gi|326551215|gb|ADZ79600.1| Exonuclease RNase T and DNA polymerase III [Sphingobacterium sp.
           21]
          Length = 330

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 9/104 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDEF 69
           FD+ETTG++  +DRI+EI  ++ + D S+  +T ++    N     P  +  LHG+ DE 
Sbjct: 12  FDLETTGVNVASDRIVEISILKAMPDGSEQVKTMRI----NPEMPIPLSSSLLHGVYDED 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQR 112
           +KD P+F  +  E  DF   ++ +   +N+ KFD+  +  E  R
Sbjct: 68  IKDAPTFKQVAQEIADFL--EDTDLAGYNSNKFDIPVLMEEFLR 109


>gi|327537942|gb|EGF24639.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica WH47]
          Length = 355

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 7/110 (6%)

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           SP  +++HGIT   ++++P F  ++ E      +     IAHNA FD+G + A L+  + 
Sbjct: 47  SPANIQIHGITPGMVREEPEFGELWPEIQSTLGDDC--LIAHNASFDLGVLMACLES-HD 103

Query: 116 DPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDS 164
            P+   +   T +IARR  P   R  L  L    GI   H   H AL DS
Sbjct: 104 HPVPDMQYSCTRAIARRTWPQQPRFGLKPLSDWLGIRFRH---HDALEDS 150


>gi|261821926|ref|YP_003260032.1| ribonuclease T [Pectobacterium wasabiae WPP163]
 gi|261605939|gb|ACX88425.1| ribonuclease T [Pectobacterium wasabiae WPP163]
          Length = 223

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++E+ AV L +D   + + + T    + P  G    P AL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +   IF        +Q    A  +AHNA FD  F+ A   R  + 
Sbjct: 80  IDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAADRCSLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D++  + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|225850393|ref|YP_002730627.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
 gi|225646485|gb|ACO04671.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
          Length = 206

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 11/178 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           NK+    FD+ETTGLD + D II IGAV++ +      T    +    R    E + +H 
Sbjct: 31  NKITFCSFDLETTGLDVEKDEIISIGAVKIKEMKIDLSTSFYRIVKPERIPEKENILIHS 90

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDPSRI 123
           IT   +K       +  +F ++   +    I +   FD+  ++   Q+    P L+P   
Sbjct: 91  ITASEMKKGEDIRDVLPKFLEYI--KGTVLIGYFVSFDISMLSKYTQKFYGFPILNPYID 148

Query: 124 IDTLSIARRKHPSS------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +  L I ++    +         L+ + +   I +  R +H AL DS   + +++ +M
Sbjct: 149 VSQLYIKKKVKSYTPYEKIKEKSLDQIAEELNIPV--RKRHNALYDSITTALIFLSLM 204


>gi|187478996|ref|YP_787020.1| exonuclease [Bordetella avium 197N]
 gi|115423582|emb|CAJ50118.1| putative exonuclease [Bordetella avium 197N]
          Length = 193

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 68/150 (45%), Gaps = 8/150 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT-DE 68
           +V D+ETTGL +    I+E  AV +    +    +   +  NGR  S  A +L GI+  E
Sbjct: 29  VVADLETTGLSAHACEILEFAAVRVDTEGQIASEYSQLVRINGRVPSFIA-RLTGISQQE 87

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D       F  F DF     A    HNA FD  F+ A   R  +   + +    TL 
Sbjct: 88  VIRDGKPIDEAFRAFCDFVG--TAPVFFHNASFDTRFLRATASRCGQAFDNDTHC--TLL 143

Query: 129 IARRKHPSSRND-LNSLCKRYG-ITISHRS 156
           +ARR  P  R+  L  L +  G  T +HR+
Sbjct: 144 LARRAWPELRSHKLGMLAEHLGAATPTHRA 173


>gi|227904085|ref|ZP_04021890.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
 gi|227868104|gb|EEJ75525.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
          Length = 927

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 15/176 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           NK    V D+ETTG   +N   II+ G   ++   K  +T+   + P+ R+     + L 
Sbjct: 6   NKDTFAVVDLETTGTQRENGHHIIQFGCA-IIKNMKVVKTYSFLINPH-REIPQSVVNLT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++E ++ +  F     +       Q+  ++AHN  FD+ F+N EL +   D L  ++ 
Sbjct: 64  GISNEDVQKQKDFDYYAPKIVSIL--QDTVFVAHNVDFDLPFLNYELTQHGYDAL-TNKA 120

Query: 124 IDTLSIARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IDT+ +A+   P+       DL S  K     I H + H A  D++  + + I+++
Sbjct: 121 IDTVELAKIAFPTLPSYKLGDLTSQLK-----IKHLNPHKADSDAYGTAVLLIEII 171


>gi|163847184|ref|YP_001635228.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525025|ref|YP_002569496.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl]
 gi|163668473|gb|ABY34839.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222448904|gb|ACM53170.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl]
          Length = 951

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 15/164 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           +  D+ETTGL S  D IIE+ AV    +   +R F+  + P  R+  P +  +L GI   
Sbjct: 7   VAIDVETTGLQSGLDEIIEVAAVTFRGHEILDR-FEQLVRP--RQAVPLKITRLTGIDPA 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ I ++   F    N   + H+  FD+  + A+  + N+       + DT  
Sbjct: 64  ALAQAPRFNEIGADLARFIG--NRPIVGHSIGFDLTMLRAQGMQFNQP------VYDTFE 115

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +A    P  S   L++L    G  I H   H AL D+ + + ++
Sbjct: 116 LATLLLPQVSSYKLSALAAHLG--IPHPDAHRALNDAEVTARLF 157


>gi|222152791|ref|YP_002561968.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus uberis 0140J]
 gi|222113604|emb|CAR41463.1| putative ATP-dependent DNA helicase [Streptococcus uberis 0140J]
          Length = 831

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 8/154 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI++ + +  V D+E T   S    II++G V +L   +   TFQ  + P+    S    
Sbjct: 12  MIKEFEKKYAVIDLEATNAGS-TASIIQVGIV-ILQGGEIRETFQTDVNPH-EPLSEHIK 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GI+DE L   P FS +    +D  +  +  ++AHN KFD   +   L     +   P
Sbjct: 69  SLTGISDEQLSKAPDFSQVAKTIYDLIH--DCIFVAHNVKFDANLLAESLFFEGFELRTP 126

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITIS 153
              IDT+ +A+  +P+  + +L+ L    G+ +S
Sbjct: 127 R--IDTVELAQVFYPTFEKYNLSVLSSELGLDLS 158


>gi|322376366|ref|ZP_08050859.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. M334]
 gi|321282173|gb|EFX59180.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. M334]
          Length = 816

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 10/166 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +R +   + P+   ++    KL G+TD
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGKIVDR-YTTDVNPHEPLDA-HIKKLTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L   P FS +  + +D    +N  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  RRLAQAPDFSQVARKIFDLV--ENGIFVAHNVQFDANLLAENLFFEGYELRNPR--VDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            + +   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 120 ELTQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|227496849|ref|ZP_03927115.1| possible DNA polymerase III subunit epsilon [Actinomyces
           urogenitalis DSM 15434]
 gi|226833644|gb|EEH66027.1| possible DNA polymerase III subunit epsilon [Actinomyces
           urogenitalis DSM 15434]
          Length = 174

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK---LHGITD 67
           V D+ETTGL    D I+EIG V         RT+   + P    +    +    +HG+  
Sbjct: 51  VVDLETTGLSPATDAILEIGLVLTAPDGTPQRTWSTLINPGAGPDGAIEVGPTFIHGLLP 110

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAEL 110
           + L   PS   +     D      A    +AHNA+FDVGF+   L
Sbjct: 111 DDLAGAPSLDDVA----DLLVRDLAGRVVVAHNARFDVGFLTQAL 151


>gi|297571327|ref|YP_003697101.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931674|gb|ADH92482.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 597

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG       + EIGAV++   +     F   + P G        +L GIT   
Sbjct: 48  LVVDVETTGEKPGLHSLTEIGAVKVRGGTVIGE-FGSLVNP-GVPIPAFITRLTGITTGM 105

Query: 70  LKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTL 127
           +   PS   +   F +F   + +  ++AHNA FD+G +      +      P+R +IDT+
Sbjct: 106 VATAPSLGEVLVSFIEFVGGDPDLIFVAHNAPFDMGQLRGAASALGL--AFPNRKVIDTV 163

Query: 128 SIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            ++RR   K     + L++L +    TIS    H AL D+    DV
Sbjct: 164 KLSRRVFMKDEVPNHKLSTLARFVNATIS--PSHRALDDARATVDV 207


>gi|226952584|ref|ZP_03823048.1| ribonuclease T (degrades tRNA, with exonuclease and ssDNAse
           activity) [Acinetobacter sp. ATCC 27244]
 gi|294649880|ref|ZP_06727280.1| ribonuclease T [Acinetobacter haemolyticus ATCC 19194]
 gi|226836664|gb|EEH69047.1| ribonuclease T (degrades tRNA, with exonuclease and ssDNAse
           activity) [Acinetobacter sp. ATCC 27244]
 gi|292824254|gb|EFF83057.1| ribonuclease T [Acinetobacter haemolyticus ATCC 19194]
          Length = 220

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 24/186 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G + + D ++EI  + ++ Y +  +     +FQ  + P  G      +L   
Sbjct: 24  VVVDVETAGFNCQTDALLEIACIPIV-YDEHGQFVPGPSFQAHINPFEGANLDRRSLDFI 82

Query: 64  GITDEF--------LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR 112
           GI D F          ++ +   IF    +    Q+   A  + HNA FD+GF+ A + R
Sbjct: 83  GI-DPFNPMRVAMAEDERSALRRIFKSLNEIRKAQHCTHAVLVGHNAHFDLGFLQAAIAR 141

Query: 113 I---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
               N++P     + DT++++       +  L   C + GI    +  H AL D+   ++
Sbjct: 142 SGTKNQNPFHSFSVFDTVTLSAVMF--GQTVLARACIQAGIEFDGKEAHSALYDTQKTAE 199

Query: 170 VYIKMM 175
           ++  ++
Sbjct: 200 LFCYIL 205


>gi|255326994|ref|ZP_05368070.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa ATCC 25296]
 gi|255296211|gb|EET75552.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa ATCC 25296]
          Length = 228

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 11/169 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  FD+ETTG+D    RI+    + LLD          +L   G +    A  +HGIT E
Sbjct: 5   RATFDLETTGVDVTTARIVTASLI-LLDPQGNVVRRGEWLADPGVEIPAGAAAVHGITTE 63

Query: 69  FLKD--KPSFSSIF--SEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDPSR 122
           + ++  +P+   ++  +      N      IA NA +D   ++ E+ R  I    L P  
Sbjct: 64  YAREHGRPAREVVWELAGAIGALNLDGVPIIAFNAAYDFSVLHHEMLRHNIANGELPPGV 123

Query: 123 IIDTLSIARRKHPSSRN--DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           ++D   + +   P  R    L  L   YG+++  +H S   AL    LL
Sbjct: 124 VLDPYVLHKHVIPRKRGKRTLEVLATEYGVSLENAHTSADDALAAERLL 172


>gi|210135714|ref|YP_002302153.1| DNA polymerase III subunit epsilon [Helicobacter pylori P12]
 gi|210133682|gb|ACJ08673.1| DNA polymerase III epsilon subunit [Helicobacter pylori P12]
          Length = 323

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GI  E   
Sbjct: 113 DLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 168

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 169 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 225

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 226 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 257


>gi|93007423|ref|YP_579187.1| DNA polymerase III [Streptomyces phage mu1/6]
 gi|90568501|gb|ABD94180.1| DNA polymerase III [Streptomyces phage mu1/6]
          Length = 238

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 25/163 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGIT 66
           R   FD ETTG+D ++DRI+   AV L+   +   T      P    + PEA   +HG+T
Sbjct: 7   RLCAFDTETTGVDVESDRIV-TAAVLLVGGGQPTETHTWLADPG--IDIPEAASAVHGVT 63

Query: 67  DEFLK--DKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR--------- 112
            E  +   +P+   + SE      +Q       +A NA+FDV  ++ EL R         
Sbjct: 64  SERARAEGRPA-PMVVSEVAALLADQIVTGVPVVAMNARFDVTILDRELARHGLPSLAEQ 122

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRND--LNSLCKRYGITIS 153
              +PL    ++D L + +R     R    L  L + YG+ + 
Sbjct: 123 AGAEPL----VLDPLVMDKRAEKYRRGGRKLVDLARHYGVQLG 161


>gi|32477333|ref|NP_870327.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica SH 1]
 gi|32447884|emb|CAD77402.1| probable DNA polymerase III polC-type [Rhodopirellula baltica SH 1]
          Length = 355

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 7/110 (6%)

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           SP  +++HGIT   ++++P F  ++ E      +     IAHNA FD+G + A L+  + 
Sbjct: 47  SPANIQIHGITPGMVREEPEFGELWPEIQSTLGDDC--LIAHNASFDLGVLMACLES-HD 103

Query: 116 DPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDS 164
            P+   +   T +IARR  P   R  L  L    GI   H   H AL DS
Sbjct: 104 HPVPDMQYSCTRAIARRTWPQQPRFGLKPLSDWLGIRFRH---HDALEDS 150


>gi|297808725|ref|XP_002872246.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318083|gb|EFH48505.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 316

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 21/182 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDE 68
           IV D+ETTGL+ K +RIIEI A +L     +  TFQ  + P    + P     +HGI  +
Sbjct: 112 IVSDLETTGLNRKRERIIEIAAQDLAGGGYS--TFQTLVNPG---DVPVTNTDIHGIRTD 166

Query: 69  FL--KDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAK-FDVGFINAELQRINKDPLDP 120
            +   + P    +   F  +   +         +AHN K FD  F+  E  R + +    
Sbjct: 167 MVCRPEVPRMEELIPIFLQYVESRQKPGGYVMLVAHNGKSFDFRFLINEFNRCSYEIPHN 226

Query: 121 SRIIDTLSIARRKHPS------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             ++D+L + R    S       +  L  L + Y +T      H AL D  LLS V+ K+
Sbjct: 227 WLLLDSLPLGREHMKSLDPTGKPKASLKVLQEHYSLT-REGDAHRALSDVLLLSKVFQKL 285

Query: 175 MV 176
            +
Sbjct: 286 TI 287


>gi|77361037|ref|YP_340612.1| ribonuclease T [Pseudoalteromonas haloplanktis TAC125]
 gi|76875948|emb|CAI87170.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 232

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCPNGRKNSPEA-LKLH 63
           +V D+ET G +   D ++EI AV +L          + T    + P    N  +A ++ +
Sbjct: 19  VVIDVETGGFNKDTDALLEI-AVSVLKMDDEGLLSIDHTVHFHVEPFADANIEQAAIEFN 77

Query: 64  GITDEF--LKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQR-- 112
           GI D F  L+          E      +       Q +  +AHNA FD GF+NA ++R  
Sbjct: 78  GI-DPFSALRGAVPEEHAIKEICKVVRKAQKAAGCQRSVVVAHNAAFDHGFLNAAIERNN 136

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I + P  P    DT S+A       +  L   C+  GI   +   H AL D+   +++Y 
Sbjct: 137 IKRTPFHPFVSFDTTSLAGLA--LGQTVLAKACRAAGIEFDNSQAHSALYDTERTAELYC 194

Query: 173 KMM 175
            ++
Sbjct: 195 LIV 197


>gi|325917515|ref|ZP_08179720.1| RNAse T [Xanthomonas vesicatoria ATCC 35937]
 gi|325536273|gb|EGD08064.1| RNAse T [Xanthomonas vesicatoria ATCC 35937]
          Length = 213

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 29/170 (17%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCPN-GRKNSPEALKLH 63
            +V D+ET G D     ++EI  V + +D         T    L P  G +  P++L++ 
Sbjct: 27  PVVVDVETGGFDWNKHALLEIACVPIEMDADGRFFPGETASAHLVPAPGLEIDPKSLEIT 86

Query: 64  GITDE----FLK-DKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +    F K +K +   +F+        +  Q A  + HNA FD+ F+NA + R+  
Sbjct: 87  GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 146

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++P  P  + DT+++A                 YG T+  R+   A LD
Sbjct: 147 KRNPFHPFSVFDTVTLAGVA--------------YGQTVLARAAQAAGLD 182


>gi|262047863|ref|ZP_06020812.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|312976690|ref|ZP_07788439.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
 gi|260571856|gb|EEX28428.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|310896018|gb|EFQ45083.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
          Length = 318

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 11/158 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--KLHGITDE 68
           + DIETTGL    DRI E+G V++ +    ++     L    + NS  A   KL+GIT+E
Sbjct: 35  MLDIETTGLYPYRDRITELGGVKVRNGQIVDQYTN--LVKFSKNNSVPAFITKLNGITEE 92

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            + K+         EF +F  +     I +N  FD+ F+    Q+     LD +  +D L
Sbjct: 93  QIGKEGIPAEQAIREFREFIGDD--VIIGYNVNFDLNFLYDLSQKYGLPVLD-NDYVDVL 149

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164
            +AR  +P  R N L    +R G  I+    H  L DS
Sbjct: 150 RLARTYYPRERHNRLLDCMQRAG--IAQVEAHHGLQDS 185


>gi|254383630|ref|ZP_04998980.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
 gi|194342525|gb|EDX23491.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
          Length = 241

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 21/166 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M R  +     FD ETTG+D + DRI+    +         R+ +  + P G    P A 
Sbjct: 1   MTRWYEGPLAAFDTETTGVDVEQDRIVSAALIVQECAGGRVRSTRWLVNP-GIPVPPGAT 59

Query: 61  KLHGITDEFLKDKPSF-SSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR---- 112
           ++HG+TD+ L+    + + +  E      EQ       +  NA FD+  ++ EL+R    
Sbjct: 60  EVHGLTDDHLQRNGRWPAPVVEEIARALGEQLVAGRPVVVMNAPFDLTLLDRELRRHRAS 119

Query: 113 -----INKDP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150
                ++  P   LDP R++D      RK    R  L  LC  YGI
Sbjct: 120 SLARYLDNRPLTVLDP-RVLDKHLDRYRK---GRRTLTDLCAHYGI 161


>gi|227877650|ref|ZP_03995697.1| DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256850746|ref|ZP_05556169.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|227862746|gb|EEJ70218.1| DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256712459|gb|EEU27457.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
          Length = 318

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 11/158 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--KLHGITD- 67
           + DIETTGL    DRI E+G V++ +    ++     L    + NS  A   KL+GIT+ 
Sbjct: 35  MLDIETTGLYPYRDRITELGGVKVRNGQIVDQYTN--LVKFSKNNSVPAFITKLNGITEA 92

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +K+         EF +F  +     I +N  FD+ F+    Q+     LD +  +D L
Sbjct: 93  QIVKEGIPAEQAIREFREFIGDD--VIIGYNVNFDLNFLYDLSQKYGLPVLD-NDYVDVL 149

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164
            +AR  +P  R N L    +R G  I+    H  L DS
Sbjct: 150 RLARTYYPRERHNRLLDCMQRAG--IAQVEAHHGLQDS 185


>gi|255037648|ref|YP_003088269.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
           18053]
 gi|254950404|gb|ACT95104.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
           18053]
          Length = 269

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSP-EALKLHGITDEF 69
           FD+ETTG++   DRI+EI  V+ L   +T  RT ++    N     P E+  +HGI DE 
Sbjct: 13  FDLETTGVNIVRDRIVEISVVKALVNGETEIRTRRI----NPEMPIPLESSLIHGIYDED 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128
           +KD P+F S+      F    +      N +FD+  +  E  R+  D  +   R++D   
Sbjct: 69  VKDAPTFKSVAKNLASFLEGCDLAGFNSN-RFDIPMLVEEFLRVGVDFDVKNRRMVDVQR 127

Query: 129 IARRKHP 135
           I     P
Sbjct: 128 IYHMMEP 134


>gi|313206047|ref|YP_004045224.1| exonuclease rnase t and DNA polymerase iii [Riemerella
           anatipestifer DSM 15868]
 gi|312445363|gb|ADQ81718.1| Exonuclease RNase T and DNA polymerase III [Riemerella
           anatipestifer DSM 15868]
          Length = 254

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 8/128 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           +FD+ETTG +   DRI+EI  +++  D S+  +T+ V    N   + P  A  +HGI+DE
Sbjct: 11  IFDLETTGTNISKDRIVEICILKVNTDASRETKTWLV----NPEMHIPAFATAVHGISDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127
            +KD P+   I  +  +  +  +      N +FDV  +  E+ R   D  L   +++D  
Sbjct: 67  DVKDAPTLKEIAPKIMEMISGADLGGFNSN-RFDVPLLAEEMLRAGVDFDLSKMKLVDAQ 125

Query: 128 SIARRKHP 135
            I  +  P
Sbjct: 126 VIFHKMEP 133


>gi|224438091|ref|ZP_03659030.1| DNA polymerase III subunit epsilon [Helicobacter cinaedi CCUG
           18818]
          Length = 233

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 13/170 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDE 68
           +  DIET G   ++  IIEIGA+ + + S+   +F+ ++  P   +N  E   L GI  E
Sbjct: 53  VFVDIETNGAKPQSSEIIEIGALRVKN-SQILESFESYVYAPFVPENITE---LTGIRQE 108

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIIDTL 127
            +++ P    +   F +F       ++AHN  FD  F++  L++      L+P   + T+
Sbjct: 109 DIQNAPQSKEVLRAFREFLG--GGVFVAHNVNFDFSFLDYHLRQNGLFGLLNPK--LCTI 164

Query: 128 SIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMM 175
            +A++   S R  L+ L +  GI   +SHR+   A L S  + ++ I M+
Sbjct: 165 DLAKKTILSKRYALSYLNEFLGINTAMSHRAYADA-LTSFRIFEIAISML 213


>gi|182439793|ref|YP_001827512.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780457|ref|ZP_08239722.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
           griseus XylebKG-1]
 gi|178468309|dbj|BAG22829.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326660790|gb|EGE45636.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
           griseus XylebKG-1]
          Length = 241

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 13/154 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D + DRI+   A+   D +        +L   G    P A ++HG+TD+ L
Sbjct: 11  AFDTETTGVDVEQDRIVS-AALVAQDTAGGRVRVTRWLVNPGVPVPPGATEVHGLTDDHL 69

Query: 71  KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLD------P 120
           +    + + +  E      E  A     +  NA FD+  ++ EL+R     L       P
Sbjct: 70  QRNGRWPAPVMDEIARALAESCATGRPLVVMNAPFDLTLLDRELKRHRASSLARYLDGVP 129

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
            R++D   + +   ++   R  L  LC  Y + +
Sbjct: 130 MRVVDPRVLDKHLDRYRKGRRTLTDLCASYEVVL 163


>gi|50084341|ref|YP_045851.1| ribonuclease T [Acinetobacter sp. ADP1]
 gi|49530317|emb|CAG68029.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse
           activity) [Acinetobacter sp. ADP1]
          Length = 221

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 84/186 (45%), Gaps = 24/186 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-----TNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G +++ D ++EI  + ++ Y++        ++   + P  G      +L   
Sbjct: 25  VVVDVETAGFNAQTDALLEIACIPIV-YNEQGLFVPGESYHAHINPFEGANLDRRSLDFI 83

Query: 64  GITDEF--------LKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR 112
           GI D F          ++ +   IF    +   +Q   +A  + HNA FD+GF+ A + R
Sbjct: 84  GI-DPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDLGFLQAAIAR 142

Query: 113 I---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
               N++P     + DT++++       +  L   C + GI    +  H AL D+   ++
Sbjct: 143 TSTKNQNPFHSFSVFDTVTLSAVMF--GQTVLAKACIQAGIDFDGKEAHSALYDTQKTAE 200

Query: 170 VYIKMM 175
           ++  ++
Sbjct: 201 LFCYIL 206


>gi|193076779|gb|ABO11496.2| ribonuclease T [Acinetobacter baumannii ATCC 17978]
          Length = 220

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 83/185 (44%), Gaps = 22/185 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI  + ++  ++        F   + P  G      +L   G
Sbjct: 24  VVVDVETAGFNAQTDALLEIACIPIVYNAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRI 113
           I D F          ++ +   IF    +   +Q   +A  + HNA FD+GF+ A + R 
Sbjct: 84  I-DPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFLQAAIARS 142

Query: 114 ---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              N++P     ++DT++++       +  L   C + GI    +  H AL D+   +++
Sbjct: 143 GTKNQNPFHSFSVMDTVTLSAVMF--GQTVLAKACIQAGIEFDGKEAHSALYDTQKTAEL 200

Query: 171 YIKMM 175
           +  ++
Sbjct: 201 FCYIL 205


>gi|163782848|ref|ZP_02177844.1| DNA polymerase III epsilon subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881969|gb|EDP75477.1| DNA polymerase III epsilon subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 194

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           +  D+ETTG D  +  II+IGAV  ++      TF   + P      P+ +K L GIT+ 
Sbjct: 11  VAIDVETTGFDVNHAEIIDIGAVR-VEGGIITETFSSLVDPG--FFIPDRIKELTGITNA 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P    +   F DF    ++  + H+   D+ FI+ +  R+  +       I TL 
Sbjct: 68  MLVGSPKMIEVLPRFMDFIG--DSIIVGHHISQDIKFID-KYTRLYGEGKFRRPYICTLE 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R+  PS  R+ L  +   +  ++ +   H AL D+ + + V+++++
Sbjct: 125 LSRKLLPSLPRHSLKEMADYF--SVDYSRLHRALDDALITAQVFLELL 170


>gi|288923046|ref|ZP_06417199.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
 gi|288345596|gb|EFC79972.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
          Length = 296

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 14  IETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDK 73
           +ETTGL    DR++ +  V           +   L P      P  + +HG+T E L   
Sbjct: 1   METTGLWPARDRVLSVAVVLTAPDGAVQGRWSTLLDPG---CDPGPVHIHGLTRERLAGS 57

Query: 74  PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           P+F+++  E  +    +    +AHNA FD   +  E  RI +
Sbjct: 58  PTFAAVVDELSELLAGRV--LVAHNAAFDWRMLAGEALRIGR 97


>gi|256844192|ref|ZP_05549679.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|256614097|gb|EEU19299.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
          Length = 318

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 11/158 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--KLHGITD- 67
           + DIETTGL    DRI E+G V++ +    ++     L    + NS  A   KL+GIT+ 
Sbjct: 35  MLDIETTGLYPYRDRITELGGVKVRNGQIVDQYTN--LVKFSKNNSVPAFITKLNGITEA 92

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +K+         EF +F  +     I +N  FD+ F+    Q+     LD +  +D L
Sbjct: 93  QIVKEGIPAEQAIREFREFIGDD--VIIGYNVNFDLNFLYDLSQKYGLPVLD-NDYVDVL 149

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164
            +AR  +P  R N L    +R G  I+    H  L DS
Sbjct: 150 RLARTYYPRERHNRLLDCMQRAG--IAQVEAHHGLQDS 185


>gi|237801479|ref|ZP_04589940.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|330873519|gb|EGH07668.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|331024338|gb|EGI04395.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 203

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+  +   R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 3   RVAVIDFETTGISPNPGCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF    +   +AHNA FD  F + EL RI +          
Sbjct: 60  SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++ +ARR  P + N        Y    +    H A+ D+ + +++
Sbjct: 116 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 160


>gi|153836296|ref|ZP_01988963.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810]
 gi|149750571|gb|EDM61316.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810]
          Length = 247

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 17/186 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+++ D I+ IG V   +D  + + +    + PN R+ + E++ +HGITD 
Sbjct: 58  VSVDFETTGLNAEEDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITDS 116

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127
            +K+ P  + I  E  D    +    + H    +  F  NA L  I +    P  ++DTL
Sbjct: 117 EVKNAPQLTQILGEILDALAGKVV--LVHYKNIERQFFYNALLNTIGEGIQFP--VVDTL 172

Query: 128 ----SIARRKHPSSRNDLNSLCKRYG-ITISH-RSKHG--ALLDSHLLSDVYIKMMVGGS 179
               ++ RR+     N L    K+ G + + H R ++G  A    H L+D      +  +
Sbjct: 173 DIEYALQRRECSGIWNKLKG--KKPGSVRLGHARERYGLPAYQPHHALTDALATAELFQA 230

Query: 180 QINFGF 185
           Q+ + F
Sbjct: 231 QLQYHF 236


>gi|51849608|dbj|BAD42331.1| DNA helicase RecG [Nannochloris bacillaris]
          Length = 1341

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 16/134 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDE 68
           IVFD+ETTGL  + D  +EI A   L    + RTF   +   +G   S +A ++ GIT  
Sbjct: 137 IVFDLETTGLSKEKDHPVEIAAEAPL----SGRTFSTLIRLADGMSISTKAEEVTGITTA 192

Query: 69  FLKDK--PSFSSIFSEFWDFFNEQNAE--------WIAHN-AKFDVGFINAELQRINKDP 117
             KD   P+F   ++ F  F   +  +         + HN  +FD+  +    +R +   
Sbjct: 193 QCKDPSLPTFPQAYASFLRFIEAEMEDAAPGAFPLLVGHNIERFDLPLLLHCAKRFDVAA 252

Query: 118 LDPSRIIDTLSIAR 131
              +RI+DTLS +R
Sbjct: 253 PLSARILDTLSASR 266


>gi|38234148|ref|NP_939915.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200410|emb|CAE50098.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           diphtheriae]
          Length = 448

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 13/169 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEA-LKLHGITD 67
           +  D+ETT  D  +  I +IGA ++ D      T +    P G  NS  EA + +HGIT 
Sbjct: 106 VAVDVETTNSDWGS--ICQIGAAKVRD-GHVVETKEWLCTPPGDLNSFDEANIAIHGITA 162

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRIIDT 126
           + +   PSF+  + +F DF  +      AHNA+FD+  F+ A      +  L  +    +
Sbjct: 163 DMVATAPSFAECYDQFADFAGDL--PLAAHNAQFDMTAFLRATQAADIR--LRTTNFGCS 218

Query: 127 LSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L+ AR  H P + + L ++ +   + +  R+ H A  D+   + + I +
Sbjct: 219 LAAARAAHLPIANHKLPTVSQHLHVEL--RNHHNACADAEACAGILIAL 265


>gi|239638049|ref|ZP_04679008.1| exonuclease [Staphylococcus warneri L37603]
 gi|239596332|gb|EEQ78870.1| exonuclease [Staphylococcus warneri L37603]
          Length = 184

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 9/155 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   + K   I  +G V+++D ++   TF   + PN    S + + +HGI  E 
Sbjct: 7   VALDFETA--NGKRTSICSVGMVKVID-NQITETFHTLVNPNDYF-SEQNINVHGIYPED 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P+FS +F     F ++     +AHNA FD+  ++  +Q I  +    +    +  +
Sbjct: 63  VASSPNFSYVFPYMMQFIDQ--LPVVAHNAAFDMNVLHQSIQDIGLETPHLTYFC-SYQL 119

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A+R   S R  L  +   Y +       H AL D+
Sbjct: 120 AKRTVQSHRYGLKHMMDFYQLDF--HGHHDALNDA 152


>gi|254780064|ref|YP_003058171.1| DNA polymerase III subunit epsilon [Helicobacter pylori B38]
 gi|254001977|emb|CAX30236.1| DNA polymerase III epsilon subunit [Helicobacter pylori B38]
          Length = 287

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GI  E   
Sbjct: 77  DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 133 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221


>gi|213966786|ref|ZP_03394937.1| exonuclease [Pseudomonas syringae pv. tomato T1]
 gi|301383295|ref|ZP_07231713.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13]
 gi|302062466|ref|ZP_07254007.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40]
 gi|302133448|ref|ZP_07259438.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928636|gb|EEB62180.1| exonuclease [Pseudomonas syringae pv. tomato T1]
          Length = 204

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+  +   R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 4   RVAVIDFETTGISPNPGCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF    +   +AHNA FD  F + EL RI +          
Sbjct: 61  SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++ +ARR  P + N        Y    +    H A+ D+ + +++
Sbjct: 117 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 161


>gi|311746871|ref|ZP_07720656.1| exonuclease [Algoriphagus sp. PR1]
 gi|126578557|gb|EAZ82721.1| exonuclease [Algoriphagus sp. PR1]
          Length = 267

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 12/164 (7%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD+E TG +   DRI+EI  V+L +D  +   T +V     G     EA  +HG+ D+ L
Sbjct: 12  FDLEATGTNISTDRIVEISIVKLKIDGGQEIYTRRV---NPGVPIPLEASLIHGLYDKDL 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
           KD+PSF  I  E + F    +     +  K+D+  +  E  R   +  LD   ++D   I
Sbjct: 69  KDEPSFKDIAKEVYQFIGGSDLSGF-NVLKYDIPLLVEEFLRAGIEFELDKRNLLDAQKI 127

Query: 130 ARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYI 172
               H   + +L +  K Y G T+ +   H A  D+    DV+I
Sbjct: 128 F---HMMEKRNLTAAYKFYCGKTLEN--AHSAEADTLATMDVFI 166


>gi|21672469|ref|NP_660536.1| ribonuclease T [Buchnera aphidicola str. Sg (Schizaphis graminum)]
 gi|25009131|sp|Q8K9V5|RNT_BUCAP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|21623085|gb|AAM67747.1| ribonuclease T [Buchnera aphidicola str. Sg (Schizaphis graminum)]
          Length = 219

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 24/194 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIET G + K D ++EI  + L    L +          + P  G   + +A+  + 
Sbjct: 20  VVIDIETAGFNPKTDAVLEIALITLKMDKLGWLHKEDILHFHIKPFKGSIINSDAIAFNK 79

Query: 65  ITDEF------LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113
           I D F      + +  +  SI  +       Q       +AHNA FD  F+ A +QR  I
Sbjct: 80  I-DPFNPLRGAISETLAIESILEKVNYGIKIQGCTRGIVVAHNAHFDHNFLMAAIQRVKI 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             +P  P    DT +++       +  L   CK  G++  +   H AL DS   ++++ K
Sbjct: 139 KNNPFHPFVTFDTAALSGLA--VGQTVLAKACKAIGLSFDNNQAHSALYDSLQTANLFCK 196

Query: 174 MM-----VGGSQIN 182
           ++     +GG  IN
Sbjct: 197 IVNRWKGLGGWPIN 210


>gi|188528322|ref|YP_001911009.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470]
 gi|188144562|gb|ACD48979.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470]
 gi|308064307|gb|ADO06194.1| DNA polymerase III subunit epsilon [Helicobacter pylori Sat464]
          Length = 287

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GI  E   
Sbjct: 77  DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYITELTGIAYEDTL 132

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 133 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221


>gi|269467908|gb|EEZ79647.1| DNA polymerase III, epsilon subunit [uncultured SUP05 cluster
           bacterium]
          Length = 196

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 20/181 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCP-NGRKNSPEALKL 62
           +V DIET G + K D ++EI A+ +      + Y K +R F +   P  G    P ALK 
Sbjct: 13  VVVDIETGGFNDKTDAMLEICAIIIGIDDKGVYYPKDSRHFHI--EPFKGANLDPSALKF 70

Query: 63  HGI--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN 114
           +GI   + F   + +K +   IF        E+    A  + HNA FD+GF+ A   R  
Sbjct: 71  NGIDVNNPFRMAVSEKEALGEIFKTARAEMKEEECTRAILVGHNAFFDLGFLYAASNRSK 130

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            K+P      IDT+S++   +  +   L    +   I       H AL D+   ++++ K
Sbjct: 131 LKNPFHQFSTIDTVSLSALYYGETV--LAKAMRVANIEWDDAKAHSALYDTKKTAELFCK 188

Query: 174 M 174
           +
Sbjct: 189 I 189


>gi|306825581|ref|ZP_07458920.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431942|gb|EFM34919.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 830

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 10/175 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+     R +V D+E T   SK  +II++G V + +    N+ +   + P+   +S    
Sbjct: 1   MMNARNDRYVVVDLEATSTGSKA-KIIQVGIVVIENGEIINQ-YATDVNPHEPLDS-HIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+TD  L   P FS +  + ++    ++  ++AHN +FD   + AE        L  
Sbjct: 58  ELTGLTDRRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLL-AEFLFFEGYELRT 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            R +DT+ +A+  +P   + +L  LC+  GI + H   H AL D+   +++ + M
Sbjct: 115 PR-VDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYM 166


>gi|257452752|ref|ZP_05618051.1| exonuclease [Fusobacterium sp. 3_1_5R]
 gi|317059293|ref|ZP_07923778.1| exonuclease [Fusobacterium sp. 3_1_5R]
 gi|313684969|gb|EFS21804.1| exonuclease [Fusobacterium sp. 3_1_5R]
          Length = 186

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 23/184 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65
           M+ +  D ETTGL  ++  II++ A+  +D  +   T  ++  P    + S EAL +   
Sbjct: 1   MKILYLDTETTGLTYRS-TIIQLAAIVEID-GEIKETINLYCAPFPDSDISEEALSITKF 58

Query: 66  TDE--FLKDKP-----SFSSIFSEFWDFFNEQNA-EWIAHNAKFDVGFINAELQRIN--- 114
           T E  F  D P     +F+ I  ++ D +N+ +    I HN KFD+  +     R N   
Sbjct: 59  TREEIFQFDSPQVVCQTFTQILGKYVDKYNKNDKFIVIGHNVKFDLDMLRNWAYRCNERF 118

Query: 115 -------KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                  K+  D       L I  R   +  N L +LC+ + I +   + H AL D+   
Sbjct: 119 IASYIDFKNEFDTLAFTKCLKILGRLPQTENNKLETLCQAFQIPL--ENAHNALADTIAA 176

Query: 168 SDVY 171
            D+Y
Sbjct: 177 KDLY 180


>gi|320533426|ref|ZP_08034111.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134363|gb|EFW26626.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 259

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 14/149 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEF 69
           V D+ETTGL    D I+E+  V      +  R++   + P  G    P    +HG+  E 
Sbjct: 44  VVDLETTGLSPATDSILEVALVVTDAAGRVERSWSTLVDPGAGVDVGPT--HIHGLVAEE 101

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLS 128
           L   P    +        +      +AHNA+FDVGF+   L    +  LD  +R+    +
Sbjct: 102 LIGAPGLDDVADLL--VADLAGRAVVAHNARFDVGFLTQALG--TRGLLDRGARVPRVCT 157

Query: 129 IARRKH----PSSRNDLNSLCKRYGITIS 153
           +   +H    PS R  L + C+  G+ I 
Sbjct: 158 MEWARHFMTTPSRR--LTTCCEVAGVEIG 184


>gi|331018941|gb|EGH98997.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 204

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+  +   R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 4   RVAVIDFETTGISPNPGCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF    +   +AHNA FD  F + EL RI +          
Sbjct: 61  SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++ +ARR  P + N        Y    +    H A+ D+ + +++
Sbjct: 117 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 161


>gi|239631428|ref|ZP_04674459.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525893|gb|EEQ64894.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 931

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 17/160 (10%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D+ETTG   K+ DR+I+ G   L+ + K  +T    + P+  ++ P A+ +L G+   
Sbjct: 12  VVDLETTGTSVKDGDRMIQFGCA-LMQHGKIIQTISQLVNPD--RSVPVAIQRLTGLDPN 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  I         +    ++AHN  FD  F+NAE +R+    L  +  IDT+ 
Sbjct: 69  RLVAAPYFEEIAKTLHQLLTD--TVFVAHNVNFDYPFLNAEFERVGLPKLQLA-AIDTVE 125

Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDS 164
           +A+   P   +    DL S      + I H + H A  D+
Sbjct: 126 LAQILLPEISSFRLPDLTSY-----LQIEHDNPHQADSDA 160


>gi|322835471|ref|YP_004215497.1| exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602]
 gi|321170672|gb|ADW76370.1| Exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602]
          Length = 220

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V++ D  K        + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGLQGG---VVEVASVDIED-GKIVNPMSDLVRPD-RPISHQAMAIHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I   +       +  ++AHNA FD        QR+  D   P   I T+ ++
Sbjct: 59  ADKPWIEEIIPRY-----HGSQYYVAHNASFD--------QRMLPD--MPGDWICTVKLS 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + ++  +    H AL D ++ + + I++M
Sbjct: 104 RRLWPGIKYSNMALYKSLKLDVATPADLHHHRALFDCYITAALLIRIM 151


>gi|114707008|ref|ZP_01439907.1| exodeoxyribonuclease X [Fulvimarina pelagi HTCC2506]
 gi|114537558|gb|EAU40683.1| exodeoxyribonuclease X [Fulvimarina pelagi HTCC2506]
          Length = 266

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 65/158 (41%), Gaps = 21/158 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ET GL  + D +IEIG+V+L L         Q F  P G   S  A ++H ITDE 
Sbjct: 25  VIDTETAGLRLEEDAVIEIGSVDLDLVTGAIFNPMQTFCDPGGAVISDGARRVHQITDEM 84

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L   P FS     F       N E + A  A FD   +               R + T  
Sbjct: 85  LVGAPPFSDAVKPF-------NTETYAAQRADFDRSRLRLT-----------GRWLCTHK 126

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSH 165
           +A R  P+ R + L SL K   + +S   +  A L  H
Sbjct: 127 LALRAFPNVRAHGLQSLVKYVPLDLSSVDQMLAGLHPH 164


>gi|293365088|ref|ZP_06611805.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus oralis ATCC 35037]
 gi|291316538|gb|EFE56974.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus oralis ATCC 35037]
          Length = 830

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 20/180 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKN 55
           M+     R +V D+E T   SK  +II++G V     E++D   T+      + P+   +
Sbjct: 1   MMNARNDRYVVVDLEATSTGSKA-KIIQVGIVVIENGEIIDQYATD------VNPHEPLD 53

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           S    +L G+TD+ L   P FS +  + ++    ++  ++AHN +FD   + AE      
Sbjct: 54  S-HIKELTGLTDQRLAVAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLL-AEFLFFEG 109

Query: 116 DPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             L   R +DT+ +A+  +P   + +L  LC+  GI + H   H AL D+   +++ + M
Sbjct: 110 YELRTPR-VDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYM 166


>gi|260901010|ref|ZP_05909405.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308110780|gb|EFO48320.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
          Length = 248

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 17/186 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+++ D I+ IG V   +D  + + +    + PN R+ + E++ +HGITD 
Sbjct: 59  VSVDFETTGLNAEEDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITDS 117

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127
            +K+ P  + I  E  D    +    + H    +  F  NA L  I +    P  ++DTL
Sbjct: 118 EVKNAPQLTQILGEILDALAGKVV--LVHYKNIERQFFYNALLNTIGEGIQFP--VVDTL 173

Query: 128 ----SIARRKHPSSRNDLNSLCKRYG-ITISH-RSKHG--ALLDSHLLSDVYIKMMVGGS 179
               ++ RR+     N L    K+ G + + H R ++G  A    H L+D      +  +
Sbjct: 174 DIEYALQRRECSGIWNKLKG--KKPGSVRLGHARERYGLPAYQPHHALTDALATAELFQA 231

Query: 180 QINFGF 185
           Q+ + F
Sbjct: 232 QLQYHF 237


>gi|255522480|ref|ZP_05389717.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes FSL J1-175]
          Length = 807

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R IV D+ETTG   S+ DRII+  A   ++  K   T+  FL P   K  P  ++ L GI
Sbjct: 5   RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNP--EKPIPAFIQELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +D
Sbjct: 62  SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           T+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEF--NLGHDKPHRADSDAEVTAD 161


>gi|119944051|ref|YP_941731.1| exonuclease, RNase T and DNA polymerase III [Psychromonas
           ingrahamii 37]
 gi|119862655|gb|ABM02132.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas
           ingrahamii 37]
          Length = 228

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 13/161 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIE TGLD K D+++ IG + +++ +K    F        + +  ++  +HG+ D+ 
Sbjct: 44  LALDIEMTGLDPKKDQMVSIGIIPIIN-AKIQPEFAQHKLIKIQGSVGQSAVIHGVLDKD 102

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D           W F   ++   +AH+A+ D+ F+   L +           IDTL I
Sbjct: 103 LADALPLEEALQ--WLFEQCKDKVLVAHHAQLDLQFLQQSLSKSGAHSFS-MLAIDTLII 159

Query: 130 AR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLD 163
            +    RKH   +     LN+   RY + I   + H AL D
Sbjct: 160 EKERELRKHQVLKTGSLRLNACRDRYNLPI--YNAHNALTD 198


>gi|323360067|ref|YP_004226463.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
 gi|323276438|dbj|BAJ76583.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
          Length = 224

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 10/160 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTG+D  NDRI+    V +LD        + +L   G      A  +HGIT E  
Sbjct: 3   VFDLETTGVDVVNDRIV-TAHVGVLDADGHVIDARDWLADPGVDIPDGAAAIHGITSERA 61

Query: 71  K-DKPSFSSIFSEFWDFFNEQNAEWI---AHNAKFDVGFINAELQRINKDPLD-PSRIID 125
           + D      + +E  +  +   A  I   A+NA FD   +  E  R    P++ PS +ID
Sbjct: 62  RADGAPAPRVVAEVVEALSALFAAGIPVVAYNAPFDFSMLKHEAVRHGVAPIEAPSPVID 121

Query: 126 TLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            L + +   ++   +  L+ + + Y + +   S H A  D
Sbjct: 122 PLVVDKTYDRYRRGKRTLSVVAEHYAVPL--ESAHEACAD 159


>gi|301066539|ref|YP_003788562.1| Rad3-like DNA helicase [Lactobacillus casei str. Zhang]
 gi|300438946|gb|ADK18712.1| Rad3-related DNA helicase [Lactobacillus casei str. Zhang]
          Length = 931

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 17/160 (10%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D+ETTG   K+ DR+I+ G   L+ + K  +T    + P+  ++ P A+ +L G+   
Sbjct: 12  VVDLETTGTSVKDGDRMIQFGCA-LMQHGKIIQTISQLVNPD--RSVPVAIQRLTGLDPN 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  I         +    ++AHN  FD  F+NAE +R+    L  +  IDT+ 
Sbjct: 69  RLVAAPYFEEIAKTLHQLLTD--TVFVAHNVNFDYPFLNAEFERVGLPKLQLA-AIDTVE 125

Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDS 164
           +A+   P   +    DL S      + I H + H A  D+
Sbjct: 126 LAQILLPEISSFRLPDLTSY-----LQIEHDNPHQADSDA 160


>gi|308535281|ref|YP_002138830.2| 3'-to-5' exonuclease [Geobacter bemidjiensis Bem]
 gi|308052626|gb|ACH39034.2| 3'-to-5' exonuclease, putative [Geobacter bemidjiensis Bem]
          Length = 312

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 9/113 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS----PEALK-LHG 64
           +  D ETTGLD K D++IE+G V      +T   F++    +G ++     PE +K + G
Sbjct: 55  LCLDTETTGLDYKRDKVIELGIVAFEYDPETGEIFRISERYSGFEDPGFPIPEEVKEITG 114

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           I+D+ ++ +    +    F +   E++   IAHNA FD  F+ A      K P
Sbjct: 115 ISDDMVRGQ----AFDDAFINLLAEKSHMVIAHNAAFDRKFVEARFPAFTKLP 163


>gi|116494972|ref|YP_806706.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334]
 gi|116105122|gb|ABJ70264.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334]
          Length = 928

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 17/160 (10%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D+ETTG   K+ DR+I+ G   L+ + K  +T    + P+  ++ P A+ +L G+   
Sbjct: 9   VVDLETTGTSVKDGDRMIQFGCA-LMQHGKIIQTISQLVNPD--RSVPVAIQRLTGLDPN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  I         +    ++AHN  FD  F+NAE +R+    L  +  IDT+ 
Sbjct: 66  RLVAAPYFEEIAKTLHQLLTD--TVFVAHNVNFDYPFLNAEFERVGLPKLQLA-AIDTVE 122

Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDS 164
           +A+   P   +    DL S      + I H + H A  D+
Sbjct: 123 LAQILLPEISSFRLPDLTSY-----LQIEHDNPHQADSDA 157


>gi|311896766|dbj|BAJ29174.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 233

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 6/135 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+E TG      R++E+  V+L    +T R F   + P G         +HGI    +
Sbjct: 6   VVDVEATGRSPWRHRVVEVAVVQLDAGLRTEREFATLVDPGGPVGP---THVHGIAQADV 62

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P F  I     +    +    + H+   D  F+  E  RI    L    ++ T+ +A
Sbjct: 63  LGAPRFRQIAPRLLELLAGRVL--VGHHVTCDRAFLEREFARIGVA-LPQVPLLCTMRLA 119

Query: 131 RRKHPSSRNDLNSLC 145
           RR+ P +     S C
Sbjct: 120 RRQLPEAGGYGLSAC 134


>gi|322372929|ref|ZP_08047465.1| putative CRISPR-associated protein Cas2 [Streptococcus sp. C150]
 gi|321277971|gb|EFX55040.1| putative CRISPR-associated protein Cas2 [Streptococcus sp. C150]
          Length = 301

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 12/166 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +V DIET GLD K + IIEIGAV+     +    F   +     +  P A+ KL GI+  
Sbjct: 132 VVIDIETDGLDEKKNTIIEIGAVKF--NGQQVEEFNSLI--KYEEKLPTAISKLTGISKS 187

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L ++      + SEF  F  +     + +N  FD+ FIN +L +    P+  ++  D +
Sbjct: 188 LLDQEGRDLEEVLSEFLLFIGK--LTLVGYNIHFDIQFINNKLNKFGL-PILINKTHDIM 244

Query: 128 SIARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHLLSDV 170
              + +     N  L +  K YGI   + HR+   A L  HL + V
Sbjct: 245 RYVKDEKLFLDNYQLQTALKAYGIEDQVPHRALKDARLIYHLSTKV 290


>gi|191638483|ref|YP_001987649.1| ATP-dependent helicase DinG [Lactobacillus casei BL23]
 gi|190712785|emb|CAQ66791.1| ATP-dependent helicase DinG [Lactobacillus casei BL23]
 gi|327382518|gb|AEA53994.1| ATP-dependent helicase [Lactobacillus casei LC2W]
 gi|327385715|gb|AEA57189.1| ATP-dependent helicase [Lactobacillus casei BD-II]
          Length = 928

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 17/160 (10%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D+ETTG   K+ DR+I+ G   L+ + K  +T    + P+  ++ P A+ +L G+   
Sbjct: 9   VVDLETTGTSVKDGDRMIQFGCA-LMQHGKIIQTISQLVNPD--RSVPVAIQRLTGLDPN 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  I         +    ++AHN  FD  F+NAE +R+    L  +  IDT+ 
Sbjct: 66  RLVAAPYFEEIAKTLHQLLTD--TVFVAHNVNFDYPFLNAEFERVGLPKLQLA-AIDTVE 122

Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDS 164
           +A+   P   +    DL S      + I H + H A  D+
Sbjct: 123 LAQILLPEISSFRLPDLTSY-----LQIEHDNPHQADSDA 157


>gi|322374613|ref|ZP_08049127.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C300]
 gi|321280113|gb|EFX57152.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C300]
          Length = 829

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 20/173 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D   T+      + P+   +S    +L
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIENGEIIDQYATD------VNPHEPLDS-HIKEL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G+TD+ L   P FS +  + ++    ++  ++AHN +FD   + AE        L   R
Sbjct: 59  TGLTDQRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLL-AEFLFFEGYELRTPR 115

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +DT+ +A+  +P   + +L  LC+  GI + H   H AL D+   +++ + M
Sbjct: 116 -VDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYM 165


>gi|297559294|ref|YP_003678268.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296843742|gb|ADH65762.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 243

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 11/151 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD E+TGLD  NDRI+   A+  +D +   +    +L   G     EA  +H IT E  
Sbjct: 20  AFDTESTGLDLANDRIV-TAALWRIDPAARTKEVTTWLIDPGIDIPQEATDIHHITTEHA 78

Query: 71  KD--KPSFSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRINKDP-LDPS-RI 123
           ++  +P+  ++  E      +  A+    + +NA +D+G ++AEL+R +     D + R+
Sbjct: 79  REHGRPAAEAV-PEIGAALEKAAADGVPVVVYNAPYDLGLLSAELRRHDAGARFDGTLRV 137

Query: 124 IDTLSIARRKHPSSRND--LNSLCKRYGITI 152
           +D L I +R     R    L  +C  +G+ +
Sbjct: 138 LDPLVIDKRFDTFRRGSRKLVDVCAHHGVRL 168


>gi|227535024|ref|ZP_03965073.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187339|gb|EEI67406.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 931

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 17/160 (10%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D+ETTG   K+ DR+I+ G   L+ + K  +T    + P+  ++ P A+ +L G+   
Sbjct: 12  VVDLETTGTSVKDGDRMIQFGCA-LMQHGKIIQTISQLVNPD--RSVPVAIQRLTGLDPN 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  I         +    ++AHN  FD  F+NAE +R+    L  +  IDT+ 
Sbjct: 69  RLVAAPYFEEIAKTLHQLLTD--TVFVAHNVNFDYPFLNAEFERVGLPKLQLA-AIDTVE 125

Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDS 164
           +A+   P   +    DL S      + I H + H A  D+
Sbjct: 126 LAQILLPEISSFRLPDLTSY-----LQIEHDNPHQADSDA 160


>gi|325953822|ref|YP_004237482.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
 gi|323436440|gb|ADX66904.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
          Length = 253

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 4/125 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG +   DRI+EI  V+   Y+   +  + +         PE   +HGI DE +K
Sbjct: 10  FDLETTGTNIAKDRIVEIAIVKA--YTNGEKEIKTWRVNPEMPIPPETSLIHGIYDEDVK 67

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSIA 130
           D P+F  I  +  +   + +      N +FD+  +  E  R   D  L+  R ID   I 
Sbjct: 68  DAPTFREIAPQIVELIKDSDLAGFNSN-RFDIPLLAEEFLRNGIDFDLEKHRPIDVQVIF 126

Query: 131 RRKHP 135
            +  P
Sbjct: 127 HKMEP 131


>gi|227432020|ref|ZP_03914039.1| DNA-directed DNA polymerase III [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352218|gb|EEJ42425.1| DNA-directed DNA polymerase III [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 177

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 7/113 (6%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG+  + + D P F  ++     FF E N   +AHNA FD   +   LQ  + D  +P 
Sbjct: 52  IHGLHRQDVADAPKFPEVWQTISPFFTE-NKLVVAHNASFDNSILKGTLQYYDID--EPH 108

Query: 122 R-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             ++DT+  +R+  P+  N  LN++    GIT+ H   H AL D+   +++ I
Sbjct: 109 YLLLDTVQTSRKLFPNFENHKLNTVAGNLGITLDHH--HNALDDAVAAANILI 159


>gi|28871797|ref|NP_794416.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28855049|gb|AAO58111.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 204

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+  +   R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 4   RVAVIDFETTGISPNPGCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF    +   +AHNA FD  F + EL RI +          
Sbjct: 61  SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++ +ARR  P + N        Y    +    H A+ D+ + +++
Sbjct: 117 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAIADAEMAANL 161


>gi|320322651|gb|EFW78744.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330564|gb|EFW86543.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 204

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+   +  R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 4   RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVELFQSLM--NAGVRIPAFIEGLTGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          
Sbjct: 61  SNNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++ +ARR  P + N        Y    +    H A+ D+ + +++
Sbjct: 117 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 161


>gi|116618623|ref|YP_818994.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116097470|gb|ABJ62621.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 177

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 7/113 (6%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG+  + + D P F  ++     FF E N   +AHNA FD   +   LQ  + D  +P 
Sbjct: 52  IHGLHRQDVADAPKFPEVWQTISPFFTE-NKLVVAHNASFDNSILKGTLQYYDID--EPH 108

Query: 122 R-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             ++DT+  +R+  P+  N  LN++    GIT+ H   H AL D+   +++ I
Sbjct: 109 YLLLDTVQTSRKLFPNFENHKLNTVAGNLGITLDHH--HNALDDAVAAANILI 159


>gi|229588692|ref|YP_002870811.1| ribonuclease T [Pseudomonas fluorescens SBW25]
 gi|229360558|emb|CAY47415.1| ribonuclease T [Pseudomonas fluorescens SBW25]
          Length = 223

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 29/187 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-----------GRKNSPE 58
           +V D+ET G +   D ++EI A  +          Q F+ P            G      
Sbjct: 31  VVIDVETGGFNCATDALLEIAATTI------GMDEQGFVFPEHTHFFRVEPFEGANIEAA 84

Query: 59  ALKLHGI-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAEL 110
           AL+  GI  D  L+    ++ + + IF              A  + HN+ FD+GF+NA +
Sbjct: 85  ALEFTGIKLDHPLRMAVSEEAALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAV 144

Query: 111 QRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            R++  ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   +
Sbjct: 145 ARLDMKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTA 202

Query: 169 DVYIKMM 175
           +++  ++
Sbjct: 203 ELFCGIV 209


>gi|330888790|gb|EGH21451.1| exonuclease [Pseudomonas syringae pv. mori str. 301020]
 gi|330987665|gb|EGH85768.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331011360|gb|EGH91416.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 203

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+   +  R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 3   RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          
Sbjct: 60  SNNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++ +ARR  P + N        Y    +    H A+ D+ + +++
Sbjct: 116 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 160


>gi|258507958|ref|YP_003170709.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
 gi|257147885|emb|CAR86858.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
 gi|259649285|dbj|BAI41447.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
          Length = 180

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P+ +++HGIT + ++D+P+F  ++     F+        AHNA FDV  +   L R    
Sbjct: 47  PQNIRIHGITPDMVQDQPTFDRVWPHIQMFYTPGRI-VTAHNAPFDVSVLRLTLDRYGIA 105

Query: 117 PLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                ++IDT+  +R+  P   N  L+++     I + H   H AL DS+  + + I
Sbjct: 106 -APRYQVIDTVKTSRQFLPKLPNHRLDTVSAALKIPLEHH--HNALADSYACARILI 159


>gi|229551811|ref|ZP_04440536.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1]
 gi|258539212|ref|YP_003173711.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705]
 gi|229314755|gb|EEN80728.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1]
 gi|257150888|emb|CAR89860.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705]
          Length = 180

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 7/118 (5%)

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-K 115
           P+ +++HGIT + ++D+P+F  ++     F+        AHNA FDV  +   L R    
Sbjct: 47  PQNIRIHGITPDMVQDQPTFDRVWPHIQMFYTPGRI-VTAHNAPFDVSVLRLTLDRYGIA 105

Query: 116 DPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P    ++IDT+  +R+  P   N  L+++     I + H   H AL DS+  + + I
Sbjct: 106 APR--YQVIDTVKTSRQFLPKLPNHRLDTVSAALKIPLEHH--HNALADSYACARILI 159


>gi|190015910|ref|YP_001965118.1| putative exonuclease [Rhodococcus sp. NS1]
 gi|114796750|gb|ABI79343.1| putative exonuclease [Rhodococcus sp. NS1]
          Length = 238

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 30/199 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + D+ET+GLD     IIEI    ++D +         +  +  +  P A+++HG+T  
Sbjct: 51  ACIVDVETSGLDGS---IIEIA---VIDAATGEVLLNTLVDCSPVEIEPGAVEVHGLTAT 104

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSRIID 125
            L   P +S +F E       +N   +A+NAKFD G +  + +R   DP    +P+R   
Sbjct: 105 DLAGAPRWSEVFPEL--AAATKNRVVLAYNAKFDRGRVLHDCRREGIDPAHLAEPARW-- 160

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHR----SKHGALLDSHLLSDVYIKMMVGGSQI 181
              +ARR            C+  G+ +  R      H AL D    + V ++M+  G   
Sbjct: 161 QCVMARR------------CEALGLGLDGRLRLGGGHRALADVR-ATRVVLRMLADGRPD 207

Query: 182 NFGFKTNEDRFFKEEKKTV 200
             G      R  +E ++  
Sbjct: 208 TDGSAALAIRAREEAREVA 226


>gi|329298346|ref|ZP_08255682.1| ribonuclease T [Plautia stali symbiont]
          Length = 222

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A  L +D   +   + T    + P  G   +PEAL   G
Sbjct: 20  VVIDVETAGFNAQTDALLEIAATTLKMDEDGWLHRDETLHFHVEPFEGAILNPEALAFTG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +     A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGTKDSGCNRAIIVAHNATFDHNFLMATAERTGMK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   CK  GI       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACKAAGIDFDSTQAHSALYDTKQTATLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|282880819|ref|ZP_06289515.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305353|gb|EFA97417.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 183

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 7/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ET     K   + E G   + D  K   T    + P     S   +++HGI  E 
Sbjct: 7   IAIDFETA--TGKRASVCEAGICVVKD-GKIVETKSWLIRPEDNAYSYWNIQIHGIHPED 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            ++ PSF  ++ E   +  E     +AHNA FD+  I   L+  + D LD      TL  
Sbjct: 64  TENAPSFPCVWQEILTYLKETPI-LVAHNAAFDISCIRKSLELYHLDTLDVDYYC-TLRA 121

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           AR  +    + L  LC+++   I   + H A  D+ + + ++++
Sbjct: 122 ARHHYDFECHTLGYLCEQF--EIPEGTHHRAGDDAEMCARLFLR 163


>gi|330870427|gb|EGH05136.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 203

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+   +  R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 3   RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          
Sbjct: 60  SNNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++ +ARR  P + N        Y    +    H A+ D+ + +++
Sbjct: 116 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 160


>gi|302799380|ref|XP_002981449.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii]
 gi|300150989|gb|EFJ17637.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii]
          Length = 1254

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 17/178 (9%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           KM  IVFD+ETTG  +  DRIIE  A +L    ++  T    + P GR        + GI
Sbjct: 174 KMTIIVFDLETTGFRAAGDRIIEFAARDLAGGDRS--TISALVNP-GRTVPYLITAVTGI 230

Query: 66  TDEFLKDK--PSFSSIFSEFWDFFN-----EQNAEWIAHNAK-FDVGFINAELQRINKDP 117
           T++ +     PS+  +      F       ++    +AHN K FDV F+  E Q      
Sbjct: 231 TNQMVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSCGIQV 290

Query: 118 LDPSRIIDTLSIARR-KHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            +    +D++ +AR  K     N     L+ L + YG+  + R+ H A+ D ++L+ V
Sbjct: 291 PEWWLFLDSMPLARETKKKFGYNWRSLKLSVLHEAYGLHSTERA-HRAMADVNMLASV 347


>gi|237649440|ref|ZP_04523692.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae CCRI 1974]
          Length = 831

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 22  RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 68

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 69  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 126

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 127 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 178


>gi|312963198|ref|ZP_07777682.1| DNA polymerase III epsilon subunit [Pseudomonas fluorescens WH6]
 gi|311282464|gb|EFQ61061.1| DNA polymerase III epsilon subunit [Pseudomonas fluorescens WH6]
          Length = 203

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65
           R  V D ETTG+  S + R  EIG V +L+       +Q  +  N     P  + +L GI
Sbjct: 3   RIAVIDFETTGITPSSHCRATEIGVV-ILERGHIVDRYQSLM--NAGVRVPAFIEQLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  L+  P    + +E  +F        +AHNA FD  F + EL  I +  L   +   
Sbjct: 60  SNAMLRSAPPAERVMNEVNEFVG--TTPLMAHNAAFDQKFWDYELGLIRRTRLQ--KFAC 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +L +ARR  P++ N        Y         H AL D+ + +++
Sbjct: 116 SLLLARRLMPAAPNHKLGTLNSYAQLPHTGQAHRALADAEMAANL 160


>gi|312871342|ref|ZP_07731439.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 3008A-a]
 gi|312875261|ref|ZP_07735270.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2053A-b]
 gi|311089224|gb|EFQ47659.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2053A-b]
 gi|311093135|gb|EFQ51482.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 3008A-a]
          Length = 177

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 7/116 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +K+HGIT   +KD P+ + ++ +    F +     +AHNA+FD   +   L++ N    +
Sbjct: 50  IKIHGITANDVKDAPTMNEVWPKIRLLF-QPGMLVVAHNARFDCNVMKKSLKKYNI--AE 106

Query: 120 PSRI-IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           P  + IDTL+ +R   P+ +N  L+++  +  I + H   H AL DS   +++ IK
Sbjct: 107 PHYLTIDTLATSRALMPNLKNYRLDTVSNQLNIDLWHH--HNALSDSEACAEILIK 160


>gi|83647672|ref|YP_436107.1| ribonuclease T [Hahella chejuensis KCTC 2396]
 gi|123531538|sp|Q2SCE2|RNT_HAHCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|83635715|gb|ABC31682.1| ribonuclease T [Hahella chejuensis KCTC 2396]
          Length = 218

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 25/185 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQV--FLCPNGRKNSPEALK 61
           +V D+ET G +SK D ++E+ AV +      + Y +   +F V  F   N  +    AL+
Sbjct: 22  VVVDVETAGFNSKTDALLEVSAVIISMEDDGMLYPEPPVSFNVEPFAGANIEQ---AALE 78

Query: 62  LHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQR 112
             GI D F  L+D    +   +E +    +         A  + HNA FD  F+ A  +R
Sbjct: 79  FTGI-DPFNPLRDAKPEADALNELFRPIRKSVKSNGCNRAILVGHNATFDHSFLFAAAER 137

Query: 113 --INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             + ++P  P    DT ++A   +      L+  C+  GI   ++  H A  D+   +++
Sbjct: 138 GDVKRNPFHPFSTFDTATLAALAY--GHTVLSRACQLAGIPFDNKEAHSAEYDAMKTAEL 195

Query: 171 YIKMM 175
           +  ++
Sbjct: 196 FCSIV 200


>gi|330961648|gb|EGH61908.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 203

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+   +  R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 3   RIAVIDFETTGISPNHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          
Sbjct: 60  SNNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++ +ARR  P + N        Y    +    H A+ D+ + +++
Sbjct: 116 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 160


>gi|239631939|ref|ZP_04674970.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526404|gb|EEQ65405.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 309

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 18/175 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-AL 60
           IR+     IV DIETTGL S +D II++ A+++ +  K   TF  ++ P+   + PE  +
Sbjct: 38  IRRKLYDYIVLDIETTGLSSVSDDIIQLSALKVKE-DKVIDTFDSYVKPS--TSIPENVV 94

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLD 119
            + GIT+  +++ P    I  +F  F   +    + HN  +FD+ FI       N    +
Sbjct: 95  YITGITNSTVENAPEIFEIMPKFVSF--TEGMPLVGHNIIRFDIPFIVN-----NGFYYE 147

Query: 120 PSRIIDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               +DT  +A+ K    P     L +L + +GI+    S H AL D      VY
Sbjct: 148 DIEALDTWRLAKNKDFPEPLKNLKLPTLKEYFGIS---GSSHNALDDCKTTITVY 199


>gi|182683721|ref|YP_001835468.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14]
 gi|182629055|gb|ACB90003.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|289649837|ref|ZP_06481180.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 204

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+   +  R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 4   RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          
Sbjct: 61  SNNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++ +ARR  P + N        Y    +    H A+ D+ + +++
Sbjct: 117 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 161


>gi|257482174|ref|ZP_05636215.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|298488861|ref|ZP_07006886.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156614|gb|EFH97709.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 204

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+   +  R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 4   RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          
Sbjct: 61  SNNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++ +ARR  P + N        Y    +    H A+ D+ + +++
Sbjct: 117 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 161


>gi|227499152|ref|ZP_03929287.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904599|gb|EEH90517.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 228

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 15/161 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+E  G     D IIEI A+++    +    F+  + P   K S    ++ GIT + 
Sbjct: 56  VVFDLELAGY--AEDDIIEIAAIKVDFLGRQTAVFRELIRPRT-KISKRVTEMTGITRDM 112

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRIN----KDP-LDPSRI 123
           +KDKP    +   F+ F   + +  + H+  + D+  IN   +R      + P LD SR+
Sbjct: 113 VKDKPQLPEVLKRFFAFV--EGSAVMGHDIGYNDIMAINLACRRYGMKAFRPPFLDTSRL 170

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           I  L    R+    +  L +L   + I I HR  H AL D 
Sbjct: 171 I--LRHLSREAVGGKTGLAALLAHFNIPI-HRH-HEALADC 207


>gi|331266715|ref|YP_004326345.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5]
 gi|326683387|emb|CBZ01005.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5]
          Length = 830

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 86/175 (49%), Gaps = 10/175 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+     R +V D+E T   SK  +II++G V +++       +   + P+   +S    
Sbjct: 1   MMNARNDRYVVVDLEATSTGSKA-KIIQVGIV-VIENGDIIDQYATDVNPHEPLDS-HIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+TD+ L   P FS +  + ++    ++  ++AHN +FD   + AE        L  
Sbjct: 58  ELTGLTDQRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLL-AEFLFFEGYELRT 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            R +DT+ +A+  +P   + +L  LC+  GI + H   H AL D+   +++ + M
Sbjct: 115 PR-VDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYM 166


>gi|313674243|ref|YP_004052239.1| exonuclease RNAse t and DNA polymerase iii [Marivirga tractuosa DSM
           4126]
 gi|312940941|gb|ADR20131.1| Exonuclease RNase T and DNA polymerase III [Marivirga tractuosa DSM
           4126]
          Length = 267

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 21/160 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGITD 67
           ++FD+ETTG +  NDRI+E   V+++ D      T +V    N  +  P E+  +HGI D
Sbjct: 10  VIFDLETTGTNVVNDRIVEYSFVKVMPDGDVIKNTEKV----NPERPIPLESSLIHGIYD 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126
           + +KDKP+F ++  E   F +    +    N  KFDV  +  E  R + D          
Sbjct: 66  KDVKDKPTFKAMAKELSSFLH--GCDLAGFNILKFDVPVLVEEFLRADVD---------- 113

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHG-ALLDSH 165
             I++RK   ++   + + KR  +T +++   G  L+D+H
Sbjct: 114 FDISKRKLLDAQKIFHMMEKR-TLTAAYKFYCGKELVDAH 152


>gi|307127646|ref|YP_003879677.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           pneumoniae 670-6B]
 gi|306484708|gb|ADM91577.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae 670-6B]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|289627588|ref|ZP_06460542.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681]
          Length = 204

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           R  V D ETTG+   +  R  EI AV +++  +    FQ  +  N     P  ++ L GI
Sbjct: 4   RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          
Sbjct: 61  SNNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++ +ARR  P + N        Y    +    H A+ D+ + +++
Sbjct: 117 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 161


>gi|285018765|ref|YP_003376476.1| ribonuclease t (exoribonuclease t) (rnase t) protein [Xanthomonas
           albilineans GPE PC73]
 gi|283473983|emb|CBA16484.1| probable ribonuclease t (exoribonuclease t) (rnase t) protein
           [Xanthomonas albilineans]
          Length = 217

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 17/180 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCPN-GRKNSPEALKLHG 64
           +V D+ET G D     ++EI  + + +D +       T    + P  G    P++L++ G
Sbjct: 27  VVVDVETGGFDWNRHALLEIAVIPIEMDAAGKLSPGDTASAHVVPAPGTVIDPKSLEITG 86

Query: 65  IT--DEFLKDKPSFSSIFSEFWDF------FNEQNAEWIAHNAKFDVGFINAELQRIN-- 114
           I     F   KP   ++   F         +  Q A  + HNA FD+ F+NA + R    
Sbjct: 87  IVLDHPFRLAKPEREALEHVFTPVRAAVKKYGCQRAILVGHNAHFDLNFLNATVARCGHK 146

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P  + DT+++A   +   +  L    +  G   S    H A+ D+   + ++ K+
Sbjct: 147 RNPFHPFSVFDTVTLAGIAY--GQTVLARAVQAAGFEWSAADAHSAVYDTEQTARLFCKI 204


>gi|169633084|ref|YP_001706820.1| ribonuclease T [Acinetobacter baumannii SDF]
 gi|169796663|ref|YP_001714456.1| ribonuclease T [Acinetobacter baumannii AYE]
 gi|184157422|ref|YP_001845761.1| ribonuclease T [Acinetobacter baumannii ACICU]
 gi|213156111|ref|YP_002318531.1| ribonuclease T [Acinetobacter baumannii AB0057]
 gi|215484153|ref|YP_002326378.1| ribonuclease T [Acinetobacter baumannii AB307-0294]
 gi|239503321|ref|ZP_04662631.1| ribonuclease T [Acinetobacter baumannii AB900]
 gi|260550758|ref|ZP_05824966.1| ribonuclease T [Acinetobacter sp. RUH2624]
 gi|260557371|ref|ZP_05829586.1| ribonuclease T [Acinetobacter baumannii ATCC 19606]
 gi|301347763|ref|ZP_07228504.1| ribonuclease T [Acinetobacter baumannii AB056]
 gi|301512246|ref|ZP_07237483.1| ribonuclease T [Acinetobacter baumannii AB058]
 gi|301596674|ref|ZP_07241682.1| ribonuclease T [Acinetobacter baumannii AB059]
 gi|332854542|ref|ZP_08435420.1| ribonuclease T [Acinetobacter baumannii 6013150]
 gi|332870163|ref|ZP_08439075.1| ribonuclease T [Acinetobacter baumannii 6013113]
 gi|332875101|ref|ZP_08442937.1| ribonuclease T [Acinetobacter baumannii 6014059]
 gi|169149590|emb|CAM87480.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse
           activity) [Acinetobacter baumannii AYE]
 gi|169151876|emb|CAP00718.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse
           activity) [Acinetobacter baumannii]
 gi|183209016|gb|ACC56414.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU]
 gi|213055271|gb|ACJ40173.1| ribonuclease T [Acinetobacter baumannii AB0057]
 gi|213986450|gb|ACJ56749.1| ribonuclease T [Acinetobacter baumannii AB307-0294]
 gi|260406264|gb|EEW99748.1| ribonuclease T [Acinetobacter sp. RUH2624]
 gi|260408997|gb|EEX02300.1| ribonuclease T [Acinetobacter baumannii ATCC 19606]
 gi|322507302|gb|ADX02756.1| Ribonuclease T [Acinetobacter baumannii 1656-2]
 gi|323517321|gb|ADX91702.1| ribonuclease T [Acinetobacter baumannii TCDC-AB0715]
 gi|332727951|gb|EGJ59346.1| ribonuclease T [Acinetobacter baumannii 6013150]
 gi|332732430|gb|EGJ63686.1| ribonuclease T [Acinetobacter baumannii 6013113]
 gi|332736718|gb|EGJ67709.1| ribonuclease T [Acinetobacter baumannii 6014059]
          Length = 220

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 83/185 (44%), Gaps = 22/185 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI  + ++  ++        F   + P  G      +L   G
Sbjct: 24  VVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83

Query: 65  ITDEF--------LKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRI 113
           I D F          ++ +   IF    +   +Q   +A  + HNA FD+GF+ A + R 
Sbjct: 84  I-DPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFLQAAIARS 142

Query: 114 ---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              N++P     ++DT++++       +  L   C + GI    +  H AL D+   +++
Sbjct: 143 GTKNQNPFHSFSVMDTVTLSAVMF--GQTVLAKACIQAGIEFDGKEAHSALYDTQKTAEL 200

Query: 171 YIKMM 175
           +  ++
Sbjct: 201 FCYIL 205


>gi|149010565|ref|ZP_01831936.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP19-BS75]
 gi|147765046|gb|EDK71975.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP19-BS75]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|332202666|gb|EGJ16735.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA41317]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|225861294|ref|YP_002742803.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230625|ref|ZP_06964306.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255368|ref|ZP_06978954.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503192|ref|YP_003725132.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|225726410|gb|ACO22261.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238787|gb|ADI69918.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           pneumoniae TCH8431/19A]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|169833275|ref|YP_001694265.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae Hungary19A-6]
 gi|168995777|gb|ACA36389.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae Hungary19A-6]
 gi|327390159|gb|EGE88502.1| putative dnaQ exonuclease/DinG family helicase [Streptococcus
           pneumoniae GA04375]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|168486184|ref|ZP_02710692.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1087-00]
 gi|183570792|gb|EDT91320.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1087-00]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|148985845|ref|ZP_01818939.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP3-BS71]
 gi|148990415|ref|ZP_01821581.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP6-BS73]
 gi|168575465|ref|ZP_02721401.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae MLV-016]
 gi|194397188|ref|YP_002037447.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae G54]
 gi|307067407|ref|YP_003876373.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200]
 gi|147921991|gb|EDK73115.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP3-BS71]
 gi|147924320|gb|EDK75413.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP6-BS73]
 gi|183578476|gb|EDT99004.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae MLV-016]
 gi|194356855|gb|ACF55303.1| Dna polymerase III, epsylon subunit/ATP-dependent helicase DinG
           [Streptococcus pneumoniae G54]
 gi|301799817|emb|CBW32386.1| putative exonuclease [Streptococcus pneumoniae OXC141]
 gi|306408944|gb|ADM84371.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|148992472|ref|ZP_01822167.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP9-BS68]
 gi|149007688|ref|ZP_01831305.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP18-BS74]
 gi|168489814|ref|ZP_02714013.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae SP195]
 gi|147760843|gb|EDK67814.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP18-BS74]
 gi|147928789|gb|EDK79802.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP9-BS68]
 gi|183571801|gb|EDT92329.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae SP195]
 gi|332077219|gb|EGI87681.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA17545]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|160895546|ref|YP_001561128.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1]
 gi|160361130|gb|ABX32743.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1]
          Length = 211

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 8/148 (5%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+  ++  R  E+ A+ L++  +    FQ  +   G    P   +L GIT+  
Sbjct: 7   VIDFETTGMAPAQGARATEV-AIVLIEGGQVVDRFQSLMR-TGAWIPPFITRLTGITNAM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P    +  +   F    +A  +AHNA FD  F  +EL    +    P     T+ +
Sbjct: 65  VAAAPPAEEVMRDAARFVG--SAPMVAHNAAFDSKFWQSELALAGEA--APQPFACTVLL 120

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRS 156
           +RR +P +  + L+ L    G+ ++ R+
Sbjct: 121 SRRIYPEAPSHSLSRLTAHLGLPVAERA 148


>gi|260903685|ref|ZP_05912007.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium linens BL2]
          Length = 578

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 10/112 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++ R + FD+ETTG+D    RI+    VE  + ++T      +L   G +    A  +HG
Sbjct: 357 SQSRLVGFDLETTGVDPATARIVTAAFVESAENART------WLADPGVEIPEPARAVHG 410

Query: 65  ITDEFLK-DKPSFSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQR 112
           IT EF + +    + + +E      +  AE    + HN  +D+  ++AE++R
Sbjct: 411 ITTEFAQANGAPVAEVVAELCTVLADLKAEGAVVVGHNIVYDLSVMSAEVKR 462


>gi|228474048|ref|ZP_04058789.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
 gi|228274562|gb|EEK13403.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
          Length = 257

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 6/114 (5%)

Query: 5   NKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N  R I F D+ETTG D   DRI+EI  +++  +   NR  + +L        P +  +H
Sbjct: 4   NLTRPICFFDLETTGTDVSRDRIVEISILKV--WPNGNRESKTYLVNPTIPIPPASTAIH 61

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           GI+DE +   P+F  +  +       ++++   +N+ +FD+  +  EL R   D
Sbjct: 62  GISDERVAQAPTFKELAKQIHAMI--KDSDLAGYNSDRFDIPLLAEELLRAGVD 113


>gi|332669588|ref|YP_004452596.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC
           484]
 gi|332338626|gb|AEE45209.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC
           484]
          Length = 239

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 19/156 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTGLD   DRI+    V   D + T+   + +L   G +    A  +HG++ E  K
Sbjct: 11  FDTETTGLDVDRDRIVTAALVR-RDAAGTH--VRTWLLDPGVEIPEAAASIHGVSTEHAK 67

Query: 72  -----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR---- 122
                 K +   I +E    F       +A+NA FD+  ++AEL+R ++ P  P R    
Sbjct: 68  AHGVAPKAALDEIATELAGAFR-AGVPVVAYNAAFDLCLLDAELRR-HRLPTLPDRLLGA 125

Query: 123 ---IIDTLSIARR--KHPSSRNDLNSLCKRYGITIS 153
              +ID L + R   +    +  L  LC  Y +  S
Sbjct: 126 ARPVIDPLVLDRAVDREREGKRKLVDLCGVYEVVES 161


>gi|116671305|ref|YP_832238.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24]
 gi|116611414|gb|ABK04138.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24]
          Length = 254

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 101/227 (44%), Gaps = 23/227 (10%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +K  +  FD+ETTG +S+  RI+   +V ++D   +  T   +L   G +   EA ++HG
Sbjct: 23  DKRPRAAFDLETTGRNSRAARIV-TASVTVVDADGSVITEHEWLADPGIEIPAEASEVHG 81

Query: 65  ITDE--FLKDKPS------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           +T E   L+ +P+       +S+    +D         IA NA +D   + AE  R    
Sbjct: 82  VTTERARLEGRPAAEVTRELASVLQGLFD----DGIPVIAFNASYDFTVLAAESARYGIP 137

Query: 117 PLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYI 172
            L+   ++D   + ++  +    +  L +LC+ Y + +  +H S   AL    +L  +  
Sbjct: 138 QLNRFPVLDPYIMNKQVDRFRKGKRTLTALCEEYKVNLDNAHTSAADALATLRMLDAMAG 197

Query: 173 KM----MVGGS--QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
           K     M  G   Q+  G+  ++   F+   +     ++++ + P+ 
Sbjct: 198 KFPKLRMAAGQLHQLQVGWAASQAADFQTYLRKTKPAAVIEGEWPVL 244


>gi|225856476|ref|YP_002737987.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae P1031]
 gi|225724714|gb|ACO20566.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae P1031]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|168490899|ref|ZP_02715042.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC0288-04]
 gi|221231602|ref|YP_002510754.1| exonuclease [Streptococcus pneumoniae ATCC 700669]
 gi|225854318|ref|YP_002735830.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae JJA]
 gi|183574742|gb|EDT95270.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC0288-04]
 gi|220674062|emb|CAR68575.1| putative exonuclease [Streptococcus pneumoniae ATCC 700669]
 gi|225723482|gb|ACO19335.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae JJA]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|168484461|ref|ZP_02709413.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1873-00]
 gi|172042316|gb|EDT50362.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1873-00]
 gi|332203958|gb|EGJ18025.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA47368]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|149003435|ref|ZP_01828324.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP14-BS69]
 gi|237821000|ref|ZP_04596845.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758618|gb|EDK65616.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP14-BS69]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|15902755|ref|NP_358305.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae R6]
 gi|116516668|ref|YP_816199.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae D39]
 gi|15458302|gb|AAK99515.1| ATP-dependent DNA helicase [Streptococcus pneumoniae R6]
 gi|116077244|gb|ABJ54964.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae D39]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|332204813|gb|EGJ18878.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA47901]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|301793959|emb|CBW36355.1| putative exonuclease [Streptococcus pneumoniae INV104]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|225858612|ref|YP_002740122.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae 70585]
 gi|225720171|gb|ACO16025.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae 70585]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|33593048|ref|NP_880692.1| putative exonuclease [Bordetella pertussis Tohama I]
 gi|33563423|emb|CAE42302.1| putative exonuclease [Bordetella pertussis Tohama I]
 gi|332382461|gb|AEE67308.1| putative exonuclease [Bordetella pertussis CS]
          Length = 224

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 68/156 (43%), Gaps = 10/156 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD-E 68
           +V D+ETTGL      I+E  AV +    +  R F   +  +GR   P   +L GIT  E
Sbjct: 58  VVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVRTDGRV-LPFISRLTGITQAE 116

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +D       F +F DF   +      HNA FD  F+ A   R    P + ++   TL 
Sbjct: 117 VERDGVPVRQAFGDFLDFI--EGGPLFFHNASFDRRFLQAAADRTGL-PFE-AQTHCTLM 172

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163
           +AR+  P    + LN L +  G   +    H AL D
Sbjct: 173 LARQAWPELPSHKLNVLARHLG---ASEPTHRALAD 205


>gi|318041263|ref|ZP_07973219.1| putative DNA polymerase III, epsilon subunit [Synechococcus sp.
           CB0101]
          Length = 304

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 10/167 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
             R ++ D ETTGLD + DR IE+GAV L D  + +   QV L     +N  +A  ++GI
Sbjct: 72  PQRLLILDTETTGLDPQRDRCIELGAV-LFDVPRRSVLSQVSLLLPCEQNPAQA--VNGI 128

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRII 124
            D  L  +P       ++++     +   +AHNA FD  +   A L  I+K  L     +
Sbjct: 129 -DPRLTQQPQPWQQGLQWFEALLAASDVVVAHNAAFDRQWFGIAPLPAIDKPWLC---SM 184

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           + +     +H  S   +  L   Y + +   + H AL D   L+ V+
Sbjct: 185 EDIRWPADRHLRSNPSVRDLALAYSVPVW--AAHRALTDCIYLAQVF 229


>gi|315127113|ref|YP_004069116.1| hypothetical protein PSM_A2044 [Pseudoalteromonas sp. SM9913]
 gi|315015627|gb|ADT68965.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 718

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 6/104 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           V DIETTG     +RI EIG V++    +   T+   + P   +  P  +  L GI D  
Sbjct: 556 VVDIETTGGLKGGNRITEIGIVKI-KQGEIVDTWTTLINP--ERPIPRFITSLTGINDAM 612

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           + + P FS I +   +  +   + ++AHN  FD GFI  EL+RI
Sbjct: 613 VSNAPIFSEIAAPLLNQLS--GSIFVAHNVNFDYGFIKKELERI 654


>gi|262372115|ref|ZP_06065394.1| ribonuclease T [Acinetobacter junii SH205]
 gi|262312140|gb|EEY93225.1| ribonuclease T [Acinetobacter junii SH205]
          Length = 221

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 24/186 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G +S+ D ++EI  + ++ Y +  +      F   + P  G      +L   
Sbjct: 25  VVVDVETAGFNSQTDALLEIACIPIV-YDQQGQFIPGPAFHAHINPFEGANLDRRSLDFI 83

Query: 64  GITDEF--------LKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR 112
           GI D F          ++ +   IF    +    Q   +A  + HNA FD+GF+ A + R
Sbjct: 84  GI-DPFNPMRVAMAEDERGALRRIFKSLNEVRKAQHCTHAVLVGHNAHFDLGFLQAAIAR 142

Query: 113 I---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
               N++P     + DT++++       +  L   C + GI    +  H AL D+   ++
Sbjct: 143 SGTKNQNPFHSFSVFDTVTLSAVMF--GQTVLARACIQAGIEFDGKEAHSALYDTQKTAE 200

Query: 170 VYIKMM 175
           ++  ++
Sbjct: 201 LFCYIL 206


>gi|170718052|ref|YP_001785090.1| ribonuclease T [Haemophilus somnus 2336]
 gi|168826181|gb|ACA31552.1| ribonuclease T [Haemophilus somnus 2336]
          Length = 218

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 30/197 (15%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFL 48
           + KN+ R    ++ D+ET G +++ D          ++ E G   L+   K +   Q F 
Sbjct: 13  LLKNRFRGFFPVIIDVETAGFNAQTDALLELAALTLKMDENGL--LVPDEKCHFHIQPF- 69

Query: 49  CPNGRKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAK 100
              G   +PE+LK +GI  D  L+   S +   SE +            Q +  +AHNA 
Sbjct: 70  --EGANINPESLKFNGIDIDNPLRGAISENVAMSELFKMVRHGQKKADCQRSVIVAHNAT 127

Query: 101 FDVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
           FD  F+ A  +R  I ++P  P  I DT +++       +  L   C+   I+   +  H
Sbjct: 128 FDQSFVMAAAERTKIKRNPFHPFSIFDTATLSGFMF--GQTVLVKGCQVANISFDGKKAH 185

Query: 159 GALLDSHLLSDVYIKMM 175
            AL D+   ++++  M+
Sbjct: 186 SALYDAERTAELFCYMV 202


>gi|254228313|ref|ZP_04921740.1| DNA polymerase III subunit epsilon [Vibrio sp. Ex25]
 gi|262394378|ref|YP_003286232.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|151939119|gb|EDN57950.1| DNA polymerase III subunit epsilon [Vibrio sp. Ex25]
 gi|262337972|gb|ACY51767.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
          Length = 248

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+++ D I+ IG V   +D  + + +    + PN R+ + E++ +HGITD 
Sbjct: 59  VSVDFETTGLNAEEDAILTIGLVPFTIDRVQCSGSAHWVVNPN-RELNEESVVIHGITDS 117

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127
            +K+ P  + I  E  D  + +    + H    +  F  NA L  I +    P  ++DTL
Sbjct: 118 EVKNAPQLTHILGEILDALSGKVV--LVHYKNIERQFFNNALLNSIGEGIHFP--VVDTL 173

Query: 128 SIARRKHPSSRNDLNSLCKRY------GITISH---RSKHGALLDSHLLSDVYIKMMVGG 178
            I   +H   R + + L  +        + + H   R +  A    H L+D      +  
Sbjct: 174 DI---EHAIQRRECSGLFNKLKGKKPGSVRLGHARERYRLPAYQPHHALTDALATAELFQ 230

Query: 179 SQINFGF 185
           +Q+ + F
Sbjct: 231 AQLQYHF 237


>gi|15900695|ref|NP_345299.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae TIGR4]
 gi|111658147|ref|ZP_01408844.1| hypothetical protein SpneT_02000672 [Streptococcus pneumoniae
           TIGR4]
 gi|149021672|ref|ZP_01835703.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72]
 gi|14972279|gb|AAK74939.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus pneumoniae TIGR4]
 gi|147930133|gb|EDK81119.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 30/189 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +  
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLRK 167

Query: 177 GGSQINFGF 185
             +Q+  G 
Sbjct: 168 KMTQLPKGL 176


>gi|323464450|gb|ADX76603.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus pseudintermedius ED99]
          Length = 900

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 26/162 (16%)

Query: 11  VFDIETTGLDSKNDRIIEIGAV-----ELLDYS----KTNRTFQVFLCPNGRKNSPEALK 61
           V D+ETTG  +  D II+IG       +++D+     KT+ T   F+         +AL 
Sbjct: 9   VVDLETTGNQADYDEIIQIGITFVRNNQIIDHYHSMIKTDLTIPTFI---------QALT 59

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
              I +E L   P F  +  + +     ++  ++AHN  FD+ F+    ++ +     P 
Sbjct: 60  --SIEEEMLNQAPYFKEVAHKIYS--KIKDCIFVAHNVNFDLNFLKRSFKKCHIH-YQPK 114

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGA 160
           ++IDTL + +   P+ ++  L  L +  GI  T +HR+   A
Sbjct: 115 KVIDTLELFKIAFPTEKSYQLTELAESLGIPLTQAHRADEDA 156


>gi|319892447|ref|YP_004149322.1| DinG family ATP-dependent helicase YoaA [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162143|gb|ADV05686.1| DinG family ATP-dependent helicase YoaA [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 900

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 26/162 (16%)

Query: 11  VFDIETTGLDSKNDRIIEIGAV-----ELLDYS----KTNRTFQVFLCPNGRKNSPEALK 61
           V D+ETTG  +  D II+IG       +++D+     KT+ T   F+         +AL 
Sbjct: 9   VVDLETTGNQADYDEIIQIGITFVRNNQIIDHYHSMIKTDLTIPTFI---------QALT 59

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
              I +E L   P F  +  + +     ++  ++AHN  FD+ F+    ++ +     P 
Sbjct: 60  --SIEEEMLNQAPYFKEVAHKIYS--KIKDCIFVAHNVNFDLNFLKRSFKKCHIH-YQPK 114

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGA 160
           ++IDTL + +   P+ ++  L  L +  GI  T +HR+   A
Sbjct: 115 KVIDTLELFKIAFPTEKSYQLTELAESLGIPLTQAHRADEDA 156


>gi|307704598|ref|ZP_07641501.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK597]
 gi|307621843|gb|EFO00877.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK597]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 22/172 (12%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLH--- 63
           R +V D+E T   SK  +II++G V + D    +R T  V        N  E L  H   
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGKIVDRYTTDV--------NPHEPLDAHIQE 57

Query: 64  --GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
             G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P 
Sbjct: 58  LTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNPR 115

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 116 --VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|220920098|ref|YP_002495399.1| DNA polymerase III subunit epsilon [Methylobacterium nodulans ORS
           2060]
 gi|219944704|gb|ACL55096.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
          Length = 223

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 4/105 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGLD + D I+ + A+ +  D   T+ +F+  +  + R +SPEA+K+H + + 
Sbjct: 32  VALDCETTGLDPRRDEIVAVAAIRIRGDRILTSESFRATVQ-SQRPSSPEAIKVHRLLEA 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
            ++       +  E   F   +    + +   FDVG ++   +RI
Sbjct: 91  EIRQGMPHDVMLPELLRFIGSRPV--VGYYTDFDVGMVDKYARRI 133


>gi|295425759|ref|ZP_06818444.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664]
 gi|295064567|gb|EFG55490.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664]
          Length = 318

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 11/165 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--KLHGITDE 68
           + DIETTGL    DR+IE+GA+++ +    +      L    + N   A   KL+GIT+E
Sbjct: 35  LLDIETTGLSPYRDRVIELGAIKVRNGEIVDEYSH--LVAYDKSNCVPAFITKLNGITEE 92

Query: 69  -FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + +    +    +F  F  +     I +N  FD+ FI  +L +    P   +  +D L
Sbjct: 93  KIINEGIPVAEAIHDFRQFIGDD--VIIGYNVNFDLNFI-YDLAKKYHLPELNNNYVDVL 149

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +AR  +P  R N L    +R G  I+   +H  L DS     VY
Sbjct: 150 RLARAYYPKERHNRLIDCMQRAG--IAQVEQHRGLDDSIDTKKVY 192


>gi|195952795|ref|YP_002121085.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1]
 gi|195932407|gb|ACG57107.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1]
          Length = 196

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 8/156 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTGL+     IIEI A  L++  +  + F   + P G        ++ GIT+  
Sbjct: 13  VVLDIETTGLNPDEHEIIEIFAF-LVEKERITKQFHRLINP-GFFIPRRITEITGITNAM 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L  +P    I  +F +F   ++   + HN KFD+ F++          L+   I  TL +
Sbjct: 71  LVGQPKVEGIIYDFDNFV--KDYIIVGHNVKFDLSFLSKAYSIYLHKKLNSPNIC-TLEL 127

Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALL 162
           +++  P+ ++  L+++   + I     HR+K  ALL
Sbjct: 128 SKKLIPNLKSYKLSAVADYFNIKYERLHRAKDDALL 163


>gi|148997118|ref|ZP_01824772.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP11-BS70]
 gi|147756818|gb|EDK63858.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP11-BS70]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 30/189 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +  
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLRE 167

Query: 177 GGSQINFGF 185
             +Q+  G 
Sbjct: 168 KMTQLPKGL 176


>gi|67077901|ref|YP_245521.1| DNA polymerase III fragment [Bacillus cereus E33L]
 gi|66970207|gb|AAY60183.1| possible exonuclease [Bacillus cereus E33L]
          Length = 287

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 10/100 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           ++ D ETTGL  + D+IIEI  ++L      N   +  +      N P EA  +HGIT++
Sbjct: 132 VILDTETTGLTLR-DQIIEICVIDLTGKILLNSLVKPTI------NIPAEAASIHGITNK 184

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
            + D PS+  I+ E  +         + +NA+FD+G I +
Sbjct: 185 MVHDAPSWIEIYKELCEV--TAGKTLLIYNAEFDLGMIES 222


>gi|116618479|ref|YP_818850.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097326|gb|ABJ62477.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 797

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 15/169 (8%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D+ETTG    K  RII+IG +  +   +    F+ F+ P G+    +  +L  I+ +
Sbjct: 8   VVVDLETTGHSVKKGGRIIQIG-MTFIKKRQIVDHFESFVNP-GQLIDRQIQQLTHISQK 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P F  I     +    QN   IAHN  FD  ++N E +R    PL  S  IDT+ 
Sbjct: 66  DVQNAPYFEEIAPLLQNLL--QNTVIIAHNVNFDYPYLNDEFERTGF-PLLKSAAIDTVQ 122

Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A+   P++      DL +      + I+ ++ H A  D+H  + +++K
Sbjct: 123 LAQILFPTAPGYRLLDLTTY-----LNITLKNAHRANADAHATALLFLK 166


>gi|116491119|ref|YP_810663.1| Rad3-related DNA helicase [Oenococcus oeni PSU-1]
 gi|118586913|ref|ZP_01544346.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163]
 gi|290890627|ref|ZP_06553698.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429]
 gi|116091844|gb|ABJ56998.1| 3'-5' exonuclease domain and Rad3-related DNA helicase [Oenococcus
           oeni PSU-1]
 gi|118432640|gb|EAV39373.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163]
 gi|290479755|gb|EFD88408.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429]
          Length = 489

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 8/164 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETT    +   II+IG +  +   K    FQ  + P G K   + + L GI +E +
Sbjct: 9   IVDLETTAPFKEGGHIIQIG-ISFVKNWKIINNFQTMVNP-GVKIPEQIVDLTGIKNEDV 66

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ P F  +     D        ++AHN ++D  ++N E  RI    L     +DT+ +A
Sbjct: 67  ENAPYFEDLARMIHD--QLSGTVFVAHNVRYDFPYLNGEFARIKMRRLR-LEYVDTVQLA 123

Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVY 171
           +   P+  +  L+ L  + GI +   HR+   A   + L   ++
Sbjct: 124 QIVFPTMNSYKLDELVSKLGINLPRHHRADQDASATAQLFLKIH 167


>gi|283785135|ref|YP_003365000.1| ribonuclease T [Citrobacter rodentium ICC168]
 gi|282948589|emb|CBG88180.1| ribonuclease T [Citrobacter rodentium ICC168]
          Length = 214

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNARTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +     A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPNNPLRGAVSEYDALHAIFKMVRKGIKDNGCNRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L+  C   G+       H AL D+   + ++ ++
Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGTQAHSALYDTERTAVLFCEI 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|77359544|ref|YP_339119.1| DNA polymerase [Pseudoalteromonas haloplanktis TAC125]
 gi|76874455|emb|CAI85676.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 207

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 13/174 (7%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K R +V D+E TGLD+K   I+ +  V +++      +    L     KN  ++   HGI
Sbjct: 22  KQRYLVIDLELTGLDAKQHEIVSLAWV-VIENQCIKMSQSQHLINKEVKNLAQSPVYHGI 80

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            ++ +    S  SI     + FN+     + HNA  D GF+   L+  N     P  I+ 
Sbjct: 81  NNDNVAAGQSLHSILEHLSEHFND--CILVFHNAMLDWGFLKPALKNANITT-RPKLILC 137

Query: 126 TLSIARRKHPSSRND-------LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           TL I +++      +       LN    RY +   H   H AL D+   +++++
Sbjct: 138 TLQIEKKRLQHQGVEIKQDDLTLNECRNRYELPSYH--CHHALTDAQATAELFL 189


>gi|239636871|ref|ZP_04677870.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           warneri L37603]
 gi|239597545|gb|EEQ80043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           warneri L37603]
          Length = 902

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 12/162 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + + N+    +  +        P    L  I + 
Sbjct: 8   VVDLETTGNQLDYDDIIQIG----ITFVRQNKIIGTYHSMIRTDLDIPPFIQALTSIEET 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  + +     Q   ++AHN  FD+ FI    +  N     P R++DTL 
Sbjct: 64  MLEKAPYFKEIAHDIYQ--QLQECVFVAHNVAFDLNFIKKAFKNCNI-KYRPKRVLDTLE 120

Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           + +   P+ ++  L+ L + + I +  +HR+   A   + L+
Sbjct: 121 LFKIAFPTDKSYQLSELAEAHDIPLNNAHRADEDATTTAQLM 162


>gi|303255784|ref|ZP_07341825.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS455]
 gi|303260270|ref|ZP_07346241.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP-BS293]
 gi|303261476|ref|ZP_07347424.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP14-BS292]
 gi|303264144|ref|ZP_07350065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS397]
 gi|303266246|ref|ZP_07352137.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS457]
 gi|303268684|ref|ZP_07354474.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS458]
 gi|301801646|emb|CBW34344.1| putative exonuclease [Streptococcus pneumoniae INV200]
 gi|302597168|gb|EFL64273.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS455]
 gi|302637610|gb|EFL68097.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP14-BS292]
 gi|302638594|gb|EFL69058.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP-BS293]
 gi|302641744|gb|EFL72101.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS458]
 gi|302644176|gb|EFL74432.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS457]
 gi|302646549|gb|EFL76775.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS397]
          Length = 816

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|315022360|gb|EFT35388.1| DNA Pol III Epsilon Chain [Riemerella anatipestifer RA-YM]
 gi|325336512|gb|ADZ12786.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases
           [Riemerella anatipestifer RA-GD]
          Length = 254

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 8/128 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           +FD+ETTG +   DRI+EI  +++  D S+  +T+ V    N   + P  A  +HGI+DE
Sbjct: 11  IFDLETTGTNISKDRIVEICILKVNPDASRETKTWLV----NPEMHIPAFATAVHGISDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127
            +KD P+   I  +  +  +  +      N +FDV  +  E+ R   D  L   +++D  
Sbjct: 67  DVKDAPTLKEIAPKIMEMISGADLGGFNSN-RFDVPLLAEEMLRAGVDFDLSKMKLVDAQ 125

Query: 128 SIARRKHP 135
            I  +  P
Sbjct: 126 VIFHKMEP 133


>gi|302773125|ref|XP_002969980.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii]
 gi|300162491|gb|EFJ29104.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii]
          Length = 1208

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 17/178 (9%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           KM  IVFD+ETTG  +  DRIIE  A +L    ++  T    + P GR        + GI
Sbjct: 174 KMTIIVFDLETTGFRAAGDRIIEFAARDLAGGDRS--TISALVNP-GRTVPYLITAVTGI 230

Query: 66  TDEFLKDK--PSFSSIFSEFWDFFN-----EQNAEWIAHNAK-FDVGFINAELQRINKDP 117
           T++ +     PS+  +      F       ++    +AHN K FDV F+  E Q      
Sbjct: 231 TNQMVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSCGIQV 290

Query: 118 LDPSRIIDTLSIARR-KHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            +    +D++ +AR  K     N     L+ L + YG+  + R+ H A+ D ++L+ V
Sbjct: 291 PEWWLFLDSMPLAREAKKKFGYNWRSLKLSVLHEAYGLHSTERA-HRAMADVNMLASV 347


>gi|288905684|ref|YP_003430906.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gallolyticus UCN34]
 gi|288732410|emb|CBI13982.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gallolyticus UCN34]
          Length = 834

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 7/136 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++ N  +  + D+E TG  +  + II++G V +++  +  +T+Q  + P+    S   +
Sbjct: 8   MMQVNSQKYAIVDLEATGAHAMAE-IIQVGIV-IIENDEIVKTYQTDVNPH-EALSEHII 64

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITDE L   P FS +  E +     ++  ++AHN KFD   +  +L     +   P
Sbjct: 65  NLTGITDEQLAKAPDFSQVAQEVFSLI--EDCVFVAHNVKFDANLLAEQLFMEGYELRTP 122

Query: 121 SRIIDTLSIARRKHPS 136
              +DT+ +A+  +P+
Sbjct: 123 R--VDTVELAQVFYPT 136


>gi|253800757|ref|YP_003033758.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 1435]
 gi|289555976|ref|ZP_06445186.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 605]
 gi|297636389|ref|ZP_06954169.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN
           4207]
 gi|297733383|ref|ZP_06962501.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN
           R506]
 gi|313660714|ref|ZP_07817594.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN
           V2475]
 gi|253322260|gb|ACT26863.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 1435]
 gi|289440608|gb|EFD23101.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 605]
 gi|328460485|gb|AEB05908.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 4207]
          Length = 329

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 8/123 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T   L
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
             +P F+ I  E  D    +    +AHN  FD  F+ AE +    + P+D   ++ T+ +
Sbjct: 75  DGQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130

Query: 130 ARR 132
           ARR
Sbjct: 131 ARR 133


>gi|318606038|emb|CBY27536.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 220

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 27/170 (15%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL+     I+EI +++++D + +N      + P+ R  S +A+ +H IT+E +
Sbjct: 5   VIDTETCGLEGG---IVEIASIDVMDGALSN-PMSDLVSPD-RPISLDAMVIHHITEEMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP  +    ++     + +  ++AHNA FD G +          P    + I TL +A
Sbjct: 60  EGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICTLKLA 104

Query: 131 RRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175
           R  +P  ++    L  RY + ++     +   H AL D ++ + +  ++M
Sbjct: 105 RMLYPDIKHSNQYL--RYALRLNVSVPDNLYPHRALYDCYVTAALLQRIM 152


>gi|312870293|ref|ZP_07730421.1| exonuclease [Lactobacillus oris PB013-T2-3]
 gi|311094177|gb|EFQ52493.1| exonuclease [Lactobacillus oris PB013-T2-3]
          Length = 178

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI +  + D P+F  ++     F+  +    IAHN +FD G + + L+    +P  
Sbjct: 50  VQIHGIHERDVADAPTFPEVWEHIKGFYTPEKLV-IAHNNRFDNGVLKSTLEHYGIEP-P 107

Query: 120 PSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             + +DT+  +RR  P   N  LN++C    I + H   H AL D+   +++ +
Sbjct: 108 AYQTLDTVVSSRRLLPGLSNYKLNTVCDALNIDLHHH--HNALDDAQACANILL 159


>gi|255316545|ref|ZP_05358128.1| DNA polymerase III PolC [Clostridium difficile QCD-76w55]
          Length = 285

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V DIETT     K  RI+EIGAV++ +  +    F   + P   K   +  +L  IT++
Sbjct: 18  VVVDIETTAFSIQKGGRILEIGAVKIKN-GEIVDNFSTLVNPE-LKIPKKITELTKITND 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDPLDPSRIIDTL 127
            +KD P   ++  +F +F ++  +  +AHNA FD   F+   L  I        +++DT+
Sbjct: 76  MVKDAPYIGNVLQKFNEFISD--SVIVAHNASFDWDRFLKPALATIGIKS--SHKVMDTV 131

Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           S+++   P   ++ L  LC    + +     H A+ D+   +  ++K+
Sbjct: 132 SLSKFTFPDKKKHTLIDLCSYLEVPLEKN--HRAIDDAIATAKCFLKL 177


>gi|50120858|ref|YP_050025.1| ribonuclease T [Pectobacterium atrosepticum SCRI1043]
 gi|81827142|sp|Q6D5W0|RNT_ERWCT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|49611384|emb|CAG74831.1| ribonuclease T [Pectobacterium atrosepticum SCRI1043]
          Length = 223

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++E+ AV L +D   + + + T    + P  G    P AL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +   IF        ++    A  +AHNA FD  F+ A  +R  + 
Sbjct: 80  IDPTNPLRGAVSEYDALHEIFKVVRKGIKDRGCNRAIIVAHNATFDHSFMAAAAERCSLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C   GI       H AL D++  + ++ ++
Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCEL 197

Query: 175 M 175
           +
Sbjct: 198 V 198


>gi|254448582|ref|ZP_05062041.1| ribonuclease T [gamma proteobacterium HTCC5015]
 gi|198261771|gb|EDY86057.1| ribonuclease T [gamma proteobacterium HTCC5015]
          Length = 212

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 86/188 (45%), Gaps = 31/188 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIET G +++ D ++EI AV + +D+    +   T    + P  G    P++L++ G
Sbjct: 17  VVIDIETGGFNAQTDAVLEIAAVMIDMDHQGRLRVGETISTHVEPFQGANIEPKSLEITG 76

Query: 65  I---------------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           I                D+ L  KP  S++ +          A  + HN+ FD+ F+NA 
Sbjct: 77  IDLNNPLRGAVSEREALDKLL--KPIRSAVKNH-----GCTRAILVGHNSFFDLNFLNAA 129

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           + R    ++P       DT++IA   +   +  L   C+  G+  ++   H A+ D+   
Sbjct: 130 IDRCTYKRNPFHAFSSFDTVTIAGLAY--GQTVLARACEAAGLGWNNSEAHSAVYDAEQT 187

Query: 168 SDVYIKMM 175
           + ++ K++
Sbjct: 188 ARLFCKVI 195


>gi|154249517|ref|YP_001410342.1| DNA polymerase III, epsilon subunit [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153453|gb|ABS60685.1| DNA polymerase III, epsilon subunit [Fervidobacterium nodosum
           Rt17-B1]
          Length = 188

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 13  DIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           DIETTG+D S  DRIIEI  + +             L          A  +H I++  ++
Sbjct: 11  DIETTGIDPSMGDRIIEIAIIPIYKGKIVKEWIYTSLVNPKVNIQAYAQSVHKISNSDIE 70

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + P    I S    +   ++   + HNAKFD+ F++   + + + PLD    IDTL I++
Sbjct: 71  NAPELDEIISVVRKY--SKDTIMVFHNAKFDLTFLDYAAKEVGQLPLD-VYYIDTLDISK 127

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQIN 182
             +   R  L SL +   + ISH+  H A  D+ + ++V+I+   M+G   I+
Sbjct: 128 AVY-GRRRKLESLAQE--MKISHKVTHRAYDDAFVTANVFIRFFDMLGWEVIH 177


>gi|325066430|ref|ZP_08125103.1| DNA polymerase III subunit epsilon-like protein [Actinomyces oris
           K20]
          Length = 259

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 14/159 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEA 59
           M     +   V D+ETTGL    D I+E+  V      +   ++   + P  G    P  
Sbjct: 34  MAEAAGVGYAVVDLETTGLSPTTDSILEVALVLTDAAGRVEHSWSTLIDPGVGVDVGPT- 92

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HG+  E L   P F  +        +      +AHNA+FDVGF+   L    +  LD
Sbjct: 93  -HIHGLVAEELIGAPGFDEVADLL--VADLAGRPVVAHNARFDVGFLTQALG--TRGLLD 147

Query: 120 -PSRIIDTLSIARRKH----PSSRNDLNSLCKRYGITIS 153
             +R+    ++    H    PS R  L + C+  G+ I 
Sbjct: 148 RGARVPRVCTMEWAHHFMTTPSRR--LTTCCEVAGVEIG 184


>gi|319760500|ref|YP_004124438.1| ribonuclease T [Candidatus Blochmannia vafer str. BVAF]
 gi|318039214|gb|ADV33764.1| ribonuclease T [Candidatus Blochmannia vafer str. BVAF]
          Length = 221

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 22/186 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-----GRKNSPEALKLHG 64
           +V D+ET GL++  D ++EI  + L   S         L  N     G    P AL L+ 
Sbjct: 21  VVIDVETAGLNANTDALLEIATITLKMDSDGWLCMDNVLHFNIKSFPGANLHPSALALNK 80

Query: 65  I-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQRI--- 113
           I  +  L+   +     +E +   N          A  +AHNA FD  FI A ++RI   
Sbjct: 81  IDPNNPLRFAVTEQEALNEIFKMVNMGIKIHECHKAIIVAHNASFDHSFIMAAIERISDT 140

Query: 114 ----NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
               N +P  P    DT +++       +  L + CK  GI       H AL D+   + 
Sbjct: 141 NNNMNVNPFHPFVTFDTAALSGLVF--GQTVLATACKHAGIVFDKSKAHSALYDTEKTAI 198

Query: 170 VYIKMM 175
           ++ +++
Sbjct: 199 LFCELV 204


>gi|332162002|ref|YP_004298579.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325666232|gb|ADZ42876.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 220

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 27/170 (15%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL+     I+EI +++++D + +N      + P+ R  S +A+ +H IT+E +
Sbjct: 5   VIDTETCGLEGG---IVEIASIDVMDGALSN-PMSDLVSPD-RPISLDAMVIHHITEEMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP  +    ++     + +  ++AHNA FD G +          P    + I TL +A
Sbjct: 60  EGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICTLKLA 104

Query: 131 RRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175
           R  +P  ++    L  RY + ++     +   H AL D ++ + +  ++M
Sbjct: 105 RMLYPDIKHSNQYL--RYALRLNVSVPDNLYPHRALYDCYVTAALLQRIM 152


>gi|317178251|dbj|BAJ56040.1| DNA polymerase III subunit epsilon [Helicobacter pylori F16]
          Length = 287

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GI  E   
Sbjct: 77  DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      E   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 133 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189

Query: 132 RKHPSSRNDLNSLCKRYG--ITISHRSKHGAL 161
           R   S R  L+ L +  G  I +SHR+   AL
Sbjct: 190 RAILSMRYSLSFLKELLGFSIEVSHRAYADAL 221


>gi|146310438|ref|YP_001175512.1| exodeoxyribonuclease X [Enterobacter sp. 638]
 gi|145317314|gb|ABP59461.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638]
          Length = 223

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 23/169 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETTGL+   + ++E+ +V+++D    N      L   G     EA+ +H IT++ +
Sbjct: 4   VIDTETTGLEGGPETVVELASVDIVDGVICNPMSD--LVKPGVAIGFEAMAIHHITEDMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P  S +   +          ++AHNAKFD     ++L +I+      +  I T  +A
Sbjct: 62  EGAPLLSEVIGRYLG-----ADAYVAHNAKFD----KSKLPQID------APWICTAKLA 106

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHG-----ALLDSHLLSDVYIKM 174
           R   P  ++  N    RY + +      G     AL D ++ +++ + M
Sbjct: 107 RSLLPEHKSHSNQYL-RYSLGLKPEVPEGLYAHRALYDCYVTAELLLYM 154


>gi|259501466|ref|ZP_05744368.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners DSM 13335]
 gi|302191565|ref|ZP_07267819.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus iners AB-1]
 gi|309803902|ref|ZP_07697986.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 11V1-d]
 gi|309804516|ref|ZP_07698582.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
 gi|309806946|ref|ZP_07700929.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
 gi|309808365|ref|ZP_07702268.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
 gi|309809203|ref|ZP_07703075.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
 gi|325912750|ref|ZP_08175130.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
 gi|329919994|ref|ZP_08276872.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 1401G]
 gi|259167134|gb|EEW51629.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners DSM 13335]
 gi|308163997|gb|EFO66260.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 11V1-d]
 gi|308166169|gb|EFO68386.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
 gi|308166670|gb|EFO68866.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
 gi|308168428|gb|EFO70543.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
 gi|308170503|gb|EFO72524.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
 gi|325477964|gb|EGC81096.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
 gi|328936765|gb|EGG33205.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 1401G]
          Length = 177

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 9/126 (7%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +K+HGIT   +KD P+   ++ +    F +     +AHNA+FD   +   L++ N    +
Sbjct: 50  IKIHGITANDVKDAPTMDEVWPKIRLLF-QPGMLVVAHNARFDCNVMKKSLKKYNI--AE 106

Query: 120 PSRI-IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK--MM 175
           P  + IDTL+ +R   P+ +N  L+++  +  I + H   H AL DS   +++ IK    
Sbjct: 107 PHYLTIDTLATSRALMPNLKNYRLDTVSNQLNIDLWHH--HNALSDSEACAEILIKQNQQ 164

Query: 176 VGGSQI 181
            G  QI
Sbjct: 165 FGDEQI 170


>gi|307702203|ref|ZP_07639163.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis
           ATCC 35037]
 gi|307624216|gb|EFO03193.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis
           ATCC 35037]
          Length = 829

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 20/173 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D   T+      + P+   +S    +L
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIENGEIIDQYATD------VNPHEPLDS-HIKEL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G+TD+ L   P FS +  + ++    ++  ++AHN +FD   + AE        L   R
Sbjct: 59  TGLTDQRLAVAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLL-AEFLFFEGYELRTPR 115

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +DT+ +A+  +P   + +L  LC+  GI + H   H AL D+   +++ + M
Sbjct: 116 -VDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYM 165


>gi|269837944|ref|YP_003320172.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787207|gb|ACZ39350.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
          Length = 197

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 21/190 (11%)

Query: 1   MIRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M+R+   R ++F D ETTGLD + + I+EI  V+    ++        + P  R   PE 
Sbjct: 18  MLRR---RDVLFLDTETTGLDGQAE-IVEIAVVD----AQGTVLLDTLVRPL-RPIPPEV 68

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGITD  +   P +  + +E    F E+    + +NA FD   I    Q+    P  
Sbjct: 69  QAIHGITDRMVAGAPRWPEVHAELVRLFRERPRA-VVYNAAFDRRVIAQTAQQHCLPPPT 127

Query: 120 P---SRIIDTLSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 ++   + A  +HP +     + L+      GI    R  H AL D+ +   V  
Sbjct: 128 AEWHCAMLRYAAYAGERHPVTGKYRWHRLDRAAAALGIP---RPTHRALGDALVCRGVVA 184

Query: 173 KMMVGGSQIN 182
            M   G ++ 
Sbjct: 185 AMAGLGGRLG 194


>gi|298209279|ref|YP_003717458.1| putative DNA polymerase III epsilon chain [Croceibacter atlanticus
           HTCC2559]
 gi|83849206|gb|EAP87075.1| putative DNA polymerase III epsilon chain [Croceibacter atlanticus
           HTCC2559]
          Length = 258

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG++   D+I+EI  +++  +   N+  + +L    R    E   +HGITDE + 
Sbjct: 12  FDLETTGVNVAKDKIVEISILKV--FPNGNKESKTWLVNPERPIPAETTAVHGITDEKVA 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           ++P+F  + S  ++     +      N +FD+  +  EL R + D
Sbjct: 70  NEPTFKELSSSIYEMIKGCDLGGFNSN-RFDIPLLAEELLRADID 113


>gi|325978714|ref|YP_004288430.1| ATP-dependent DNA helicase DinG [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178642|emb|CBZ48686.1| ATP-dependent DNA helicase DinG [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 827

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 7/136 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++ N  +  + D+E TG  +  + II++G V +++  +  +T+Q  + P+    S   +
Sbjct: 1   MMQVNSQKYAIVDLEATGAHAMAE-IIQVGIV-IIENDEIVKTYQTDVNPH-EALSEHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITDE L   P FS +  E +     ++  ++AHN KFD   +  +L     +   P
Sbjct: 58  NLTGITDEQLAKAPDFSQVAQEVFSLI--EDCVFVAHNVKFDANLLAEQLFMEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPS 136
              +DT+ +A+  +P+
Sbjct: 116 R--VDTVELAQVFYPT 129


>gi|306831779|ref|ZP_07464935.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304425977|gb|EFM29093.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 827

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 7/136 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++ N  +  + D+E TG  +  + II++G V +++  +  +T+Q  + P+    S   +
Sbjct: 1   MMQVNSQKYAIVDLEATGAHAMAE-IIQVGIV-IIENDEIVKTYQTDVNPH-EALSEHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITDE L   P FS +  E +     ++  ++AHN KFD   +  +L     +   P
Sbjct: 58  NLTGITDEQLAKAPDFSQVAQEVFSLI--EDCVFVAHNVKFDANLLAEQLFMEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPS 136
              +DT+ +A+  +P+
Sbjct: 116 R--VDTVELAQVFYPT 129


>gi|119471121|ref|ZP_01613653.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7]
 gi|119445777|gb|EAW27059.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7]
          Length = 745

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 6/102 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           V DIETTG     +R+ EIG V++  + K   T+   + P  +++ P  + KL GI+D  
Sbjct: 581 VVDIETTGGLKGGNRVTEIGIVKV-QHGKVIDTWTTLINP--QRHIPSFITKLTGISDGM 637

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           + + P F+ I     D      + ++AHN  FD GFI  E +
Sbjct: 638 VYNAPVFADIAQPLLD--KLAGSIFVAHNVNFDYGFIKKECE 677


>gi|322392254|ref|ZP_08065715.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus peroris ATCC 700780]
 gi|321144789|gb|EFX40189.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus peroris ATCC 700780]
          Length = 823

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 10/168 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D  +    +   + P+   +S    +L G+TD
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIED-GEIVEQYATDVNPHEHLDS-HIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + ++    ++  ++AHN +FD   + AE        L   R IDT+
Sbjct: 64  KRLAKAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLL-AEFLFFEGYELRTPR-IDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +A+  +P   + +L  LC+  GI +     H AL D+   +++++ M
Sbjct: 120 ELAQVFYPQLEKYNLGILCQELGIPLEQ--AHTALSDAQATAELFLCM 165


>gi|309801335|ref|ZP_07695464.1| exonuclease [Bifidobacterium dentium JCVIHMP022]
 gi|308222224|gb|EFO78507.1| exonuclease [Bifidobacterium dentium JCVIHMP022]
          Length = 187

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 10/107 (9%)

Query: 10  IVFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEAL-KLHGIT 66
           ++ D ETTGL  +    IIEIGA+ +   ++  R  F+  + P  ++  PE + +L GI+
Sbjct: 1   MMLDTETTGLHPEEGATIIEIGALLVTPGNENARPRFEQLVDP--QRPLPEFISRLTGIS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINA 108
           D  L++KP+  +    F  + ++     +    IAHNA+FD+GF++A
Sbjct: 59  DGMLRNKPTADAAMLRFHQWLDDVWPAGRPLTVIAHNAEFDIGFLDA 105


>gi|119471955|ref|ZP_01614240.1| DNA polymerase III subunit epsilon [Alteromonadales bacterium TW-7]
 gi|119445213|gb|EAW26504.1| DNA polymerase III subunit epsilon [Alteromonadales bacterium TW-7]
          Length = 234

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 11/127 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65
           +  D ETTGL+SK D I+ +G V       Y K ++ + V      R+N S  ++ +HGI
Sbjct: 46  VALDFETTGLNSKADDIVSVGLVPFTLARIYCKQSKHWVV----QPRRNLSESSIVIHGI 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   + + P F +I +   D    +    + H A  + GF N+ L    K+ ++   ++D
Sbjct: 102 THNDVDNAPDFDNIIAPLLDALRSKVI--VVHYAAIERGFFNSALLLRLKEHIE-FMVVD 158

Query: 126 TLSIARR 132
           T+ + RR
Sbjct: 159 TMELERR 165


>gi|239932382|ref|ZP_04689335.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291440749|ref|ZP_06580139.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291343644|gb|EFE70600.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
          Length = 241

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 21/158 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D + DRI+   A+ + D   T      +L   G      A ++HG+T E L
Sbjct: 11  AFDTETTGVDVEADRIVS-AALVVQDAPGTRPRVTDWLVNPGVPVPAAATEVHGLTQEHL 69

Query: 71  KDKPSF-SSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR---------INKDP 117
           +    + + +  E      EQ       +  NA FD+  ++ EL+R           + P
Sbjct: 70  QRNGRWPAPVMYEVAQALAEQARVGRPLVVMNAPFDLTLLDRELRRHRASSLSRWFERVP 129

Query: 118 ---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
              LDP R++D      RK    R  L  LC  YG+ +
Sbjct: 130 LLVLDP-RVLDKHLDRYRK---GRRTLTDLCAHYGVPL 163


>gi|167035320|ref|YP_001670551.1| ribonuclease T [Pseudomonas putida GB-1]
 gi|166861808|gb|ABZ00216.1| ribonuclease T [Pseudomonas putida GB-1]
          Length = 224

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 29/187 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-----------GRKNSPE 58
           +V D+ET G +S  D ++EI AV +    K       FL P            G      
Sbjct: 32  VVVDVETGGFNSATDALLEIAAVTIGMDEKG------FLFPEHTYFHRVEPFEGANIEAA 85

Query: 59  ALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAEL 110
           AL+  GI  D  L+   S  S  ++ +    +       + A  + HN+ FD+GF+NA +
Sbjct: 86  ALEFTGIKLDHPLRMAVSEESALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAV 145

Query: 111 QR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            R  + ++P  P    DT ++A   +   +  L   C+   I    R  H A  D+   +
Sbjct: 146 ARNDLKRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTA 203

Query: 169 DVYIKMM 175
           +++  ++
Sbjct: 204 ELFCGIV 210


>gi|21684666|gb|AAM09078.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps]
          Length = 175

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A  +HG+ DEFL  +P+F +I      F     A  + HN  FD+ F++A L      P 
Sbjct: 25  AQAVHGLRDEFLATQPTFGAIAQRLLYFLC--GAVLVGHNLTFDLNFLDAGLVSAGFMPA 82

Query: 119 D--PSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150
               + +IDT+    ++    R  L+ LC R G+
Sbjct: 83  ARYCAGVIDTMLHLAQRGSRRRFSLDDLCDRLGV 116


>gi|238758483|ref|ZP_04619660.1| Exodeoxyribonuclease 10 [Yersinia aldovae ATCC 35236]
 gi|238703387|gb|EEP95927.1| Exodeoxyribonuclease 10 [Yersinia aldovae ATCC 35236]
          Length = 187

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 27/170 (15%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL+     I+E+ +++++D    N      + P+ R  S +A+ +H IT+E +
Sbjct: 5   VIDTETCGLEGG---IVEVASIDVVD-GVLNNPMSDLISPD-RPISIDAMVIHHITEEMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP  +    ++     + +  ++AHNA FD G +          P    + I TL +A
Sbjct: 60  EGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICTLKLA 104

Query: 131 RRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175
           R  +P  ++    L  RY + ++     +   H AL D ++ + +  ++M
Sbjct: 105 RMLYPDIKHSNQYL--RYALRLNVSVPDNLYPHRALYDCYVTAALLQRIM 152


>gi|229119030|ref|ZP_04248372.1| exonuclease [Bacillus cereus Rock1-3]
 gi|228664421|gb|EEL19920.1| exonuclease [Bacillus cereus Rock1-3]
          Length = 240

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 10/100 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           ++ D ETTGL  + D+IIEI  ++L      N   +  +      N P EA  +HGIT+E
Sbjct: 85  VILDTETTGLTLR-DQIIEICVIDLTGKILLNSLVKPTI------NIPAEAASIHGITNE 137

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
            + D PS+  I+ +  +         + +NA+FD+G I +
Sbjct: 138 MVHDAPSWIEIYIKLCEV--TAGKTLLIYNAEFDLGMIES 175


>gi|311894879|dbj|BAJ27287.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 257

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 23/158 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+D + DRI+   A+ +        T + +L   G      A  +HGI+DE ++
Sbjct: 15  FDTETTGVDVERDRIVS-AALVVQSAPAGTATVRTWLADPGVPIPESARAVHGISDERVR 73

Query: 72  --DKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDP--------- 117
              +P   ++  E      EQ       +  NA +D+  ++ EL+R              
Sbjct: 74  AHGRPP-RAVALEVARALAEQARAGVPLVVMNAPYDLTLLDRELRRHRAGSLAEALDGAE 132

Query: 118 ---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
              LDP R++D  +   RK    R  L  LC  YG+ +
Sbjct: 133 LLVLDP-RVLDKQADRYRK---GRRTLTDLCAHYGVAL 166


>gi|224825206|ref|ZP_03698312.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224602877|gb|EEG09054.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 212

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 5/109 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTGL      R  EI AV LL+  +    FQ  +   G +  P+  +L GI+
Sbjct: 12  RVAVIDFETTGLSPGIGCRATEI-AVVLLENGRVAGRFQSLM-NAGVRVPPDIERLTGIS 69

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           +  LK  P   ++  E  +F    +   +AHNA FD  F + EL +  +
Sbjct: 70  NAMLKAAPPADAVMREAAEFVG--DTPLVAHNAAFDRKFWDYELGQFGR 116


>gi|307706367|ref|ZP_07643179.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK321]
 gi|307618285|gb|EFN97440.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK321]
          Length = 816

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLVQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P   +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|295689870|ref|YP_003593563.1| exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC
           21756]
 gi|295431773|gb|ADG10945.1| Exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC
           21756]
          Length = 298

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 65/168 (38%), Gaps = 17/168 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV------FLCPNGRKNSPEALK 61
           + IV D+ETTGLD   D IIE G V    Y    R   V         P+G    P+  K
Sbjct: 43  QGIVLDLETTGLDPAKDEIIEFGLVPFT-YDAGGRIVAVGEPFSRLRQPSG-PIPPDVTK 100

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD  +  +    +  + F D      A  IAHNA FD  F  A      + P   S
Sbjct: 101 LTGLTDAMVAGQVVDPAEVATFID----GAALIIAHNAGFDRRFAEAFCPAFAQKPWACS 156

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYG-ITISHRSKHGALLDSHLLS 168
                  I  + H      L  L   YG     HR+ H  L    +L+
Sbjct: 157 YT----QIDWQAHGHESGKLAFLACAYGFFHDGHRAHHDCLATLEILA 200


>gi|312978151|ref|ZP_07789895.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus crispatus CTV-05]
 gi|310894869|gb|EFQ43939.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus crispatus CTV-05]
          Length = 926

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 13/170 (7%)

Query: 11  VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG   +N   II+ G   ++   K  +T+   + P+ R+     + L GI D+ 
Sbjct: 12  VVDLETTGTQRENGHHIIQFGCA-IIKNRKVVKTYSFLINPH-REIPQSVVNLTGIHDQD 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +  F     +       QN  ++AHN  FD+ F+N EL +   + L  ++ IDT+ +
Sbjct: 70  VAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAIDTVEL 126

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH----LLSDVYIKM 174
           A+   P+     L+ L  + G  I H   H A  D++    LL +++ K+
Sbjct: 127 AKIAFPTFPSYKLSDLTTQLG--IKHLDPHKADSDAYGTAVLLLEIFNKL 174


>gi|282858994|ref|ZP_06268131.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
 gi|282588223|gb|EFB93391.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
          Length = 894

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 22/162 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-------GRKNSPEALKL 62
           +VFD ETTGLD   D IIEI A+++ +         +++  +       G K +P     
Sbjct: 513 VVFDTETTGLDVFTDDIIEISAIKIKEGKIVGEPLDLYIYTDKPILQKLGTKENPLYEIY 572

Query: 63  HG--ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD- 119
           H    + E LK   + +  F EF D     N+  I HN  +D   ++  L+R   D +D 
Sbjct: 573 HKKLASGELLKANDALNK-FIEFVD-----NSTLIGHNINYDYHILDNCLKRYANDCMDN 626

Query: 120 -PSRIIDTLSIARRKHPSSRN-DLNSLCKRY---GITISHRS 156
              +  D+L + R   PS R+  L  L +R+   GI  SH+S
Sbjct: 627 HSYKYFDSLKLIRLLEPSLRSYKLEYLLERFQLEGIN-SHQS 667


>gi|146312061|ref|YP_001177135.1| exodeoxyribonuclease X [Enterobacter sp. 638]
 gi|145318937|gb|ABP61084.1| Exodeoxyribonuclease X [Enterobacter sp. 638]
          Length = 220

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET  L      I+E+ +V++++    N      L    R  SP+A+ +H IT+  +
Sbjct: 4   VIDTETCDLQGG---IVEVASVDVINGQIVNPMSH--LVRPDRPISPQAMAIHRITESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEEVIPNYYG-----STWYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKSRKLNVKTPEGLHHHRALYDCYITAALLIDIM 151


>gi|213029040|ref|ZP_03343487.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 139

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 22/127 (17%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102

Query: 130 ARRKHPS 136
           +RR  P 
Sbjct: 103 SRRLWPG 109


>gi|116514018|ref|YP_812924.1| Rad3-related DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093333|gb|ABJ58486.1| Rad3-related DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 930

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 15/170 (8%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG    + DRII+ G   + D  +  +T+   + P+ RK       L GI  + 
Sbjct: 12  VVDLETTGTRKEEGDRIIQFGCAIVKD-GEVVKTYSFMMNPH-RKIPLAVTNLTGIDQKM 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D+  F     +  +    Q+  ++AHN  FD  F+N EL     + L   + +DT+ +
Sbjct: 70  VADQADFKHYAPKIREIL--QDTVFVAHNVNFDFPFLNYELTNAGFEALT-CKAVDTVEL 126

Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+   P+       DL +      + I H + H A  D++  + + +K++
Sbjct: 127 AKIAFPTLPSYKLRDLTA-----SLEIKHANPHKADSDAYGTAVLLLKII 171


>gi|300775432|ref|ZP_07085294.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC
           35910]
 gi|300506172|gb|EFK37308.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC
           35910]
          Length = 407

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 9/153 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIE+ G   +N+ II+I A+   D  K    F   + P G   +P   KL  IT + +
Sbjct: 4   IIDIESNGAGYRNECIIDI-AIYRYDGQKITDQFISLVNPEG-DITPFVQKLTSITPKMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K  P F  I     +    QN   + HN  FD   +    +R+  D       +DT+ +A
Sbjct: 62  KTAPKFHEIAKRVIEI--TQNTTLVGHNIDFDYRMLRQSFKRLGYDF--KINTLDTIPLA 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGA 160
           ++  P   +  L  L K  GI ++  HR++  A
Sbjct: 118 KKLIPDEVSYSLGKLVKSLGIPLTNHHRAEGDA 150


>gi|229496202|ref|ZP_04389922.1| exonuclease [Porphyromonas endodontalis ATCC 35406]
 gi|229316780|gb|EEN82693.1| exonuclease [Porphyromonas endodontalis ATCC 35406]
          Length = 258

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 13/143 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGITD 67
           + FDIE+TGL  + DRI+EI  +++  D  +  RT ++    N   + P E+  +HGITD
Sbjct: 10  VFFDIESTGLSPEKDRIVEISLIKVYPDGHEEVRTRRL----NPECHIPEESTAVHGITD 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIID 125
           + ++D P+F  +          Q  +   +N+ +FDV  +  E  R + +      R ID
Sbjct: 66  DDVRDCPTFRQVAKSLASMI--QGCDIAGYNSNRFDVPLLGEEFLRADVEVDFSRCRFID 123

Query: 126 TLSIARRKHPSSRNDLNSLCKRY 148
             +I    H   R  L +  K Y
Sbjct: 124 VQTIF---HKMERRTLEAAYKFY 143


>gi|254457641|ref|ZP_05071069.1| exonuclease [Campylobacterales bacterium GD 1]
 gi|207086433|gb|EDZ63717.1| exonuclease [Campylobacterales bacterium GD 1]
          Length = 231

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 78/172 (45%), Gaps = 25/172 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D+ETTGL+ + DR+  IG V   D    NRT    L   G+K    A  ++ IT+E 
Sbjct: 3   IFLDVETTGLE-EIDRVCSIGIVWSED--GENRTIYE-LVNEGKKIPSLASSINHITNEM 58

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLD-PSRIID 125
           LK KP F    SE +    + N E    + HN KFD       L  + K   +    IID
Sbjct: 59  LKGKPKFQE--SEAYKLLTQHNNEDTTIVGHNIKFD-------LAMLKKSGFNFIGEIID 109

Query: 126 TLSIARRKHPSSRNDLNSL-CKRYGITISHRSK-----HGALLDSHLLSDVY 171
           TL +   KH  S  +  SL   RY + +    K     H AL D+ +  ++Y
Sbjct: 110 TLRVT--KHLVSECEQFSLQFLRYELKLYKEEKELLQAHHALSDATIAKNLY 159


>gi|149912277|ref|ZP_01900850.1| exonuclase [Moritella sp. PE36]
 gi|149804647|gb|EDM64704.1| exonuclase [Moritella sp. PE36]
          Length = 234

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 18/173 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL++K D I+ IG VEL     + +  +   +  +      + + +H ITD 
Sbjct: 47  LAVDFETTGLNAKQDNILSIGYVELAGSKIRLDSCYHQIVAAHCELVG-DNVTIHNITD- 104

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDT 126
             K+K S   + S   D       +  + H A+ +  F+  A ++     P+ P  +IDT
Sbjct: 105 --KEKASGRPLASVVEDLLAALAGKTMLVHYAQIEKTFLEQACIKLYGMAPIFP--VIDT 160

Query: 127 LSIARRKH-------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L++A+++H         SR  L++L + YG  +   S H AL D+   +++++
Sbjct: 161 LALAKKRHDRGNQAYAPSRLHLSNLREEYG--LPRYSAHNALNDAIATAELFM 211


>gi|153001188|ref|YP_001366869.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS185]
 gi|151365806|gb|ABS08806.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS185]
          Length = 228

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 29/186 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +  D+E TGL+ + D+I+ IG V     E+       +  Q+      R +  ++  +HG
Sbjct: 43  VAMDLEMTGLNPQQDQILSIGLVPIERGEIPLARAEQKLVQI------RGSVGQSATIHG 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLD-PSR 122
           I D  L    +  +     W F N+      +AH+A  D  F+  +L  I    L  P+ 
Sbjct: 97  ILDNHLVQAVTIEAAMG--W-FINQTYGRVLVAHHAPLDCRFLQQDLLAIYHQALILPA- 152

Query: 123 IIDTLSIAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            IDTL + R    R+H   +     L +  +RYG+ I   + H AL D+    ++ +  M
Sbjct: 153 -IDTLMLERHRLLREHSVIKEGSLRLGACRERYGLPIY--TAHSALTDALACGELLLAQM 209

Query: 176 --VGGS 179
             +GG+
Sbjct: 210 AAMGGA 215


>gi|119468877|ref|ZP_01611902.1| putative DNA polymerase, exonuclease activity [Alteromonadales
           bacterium TW-7]
 gi|119447529|gb|EAW28796.1| putative DNA polymerase, exonuclease activity [Alteromonadales
           bacterium TW-7]
          Length = 207

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 16/184 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E TGLDSK   I+ +  V + +        Q F+     K+  ++   HGI+ 
Sbjct: 24  RYLVIDLELTGLDSKQHEIVSVAWVVIDNQCIKMSESQHFI-NKDVKSLEQSPVFHGIST 82

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +    S  SI       F++     + HNA  D GF+   L+        P  IIDTL
Sbjct: 83  DSVAQGQSLQSILMSLSAHFSD--CILVFHNAMLDWGFLKLALKNAGVTQ-RPKLIIDTL 139

Query: 128 SIARRKHPSSRND-------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            I +++     +D       LN    RY +   H   H AL D+   +++   ++    Q
Sbjct: 140 QIEKKRLLQHASDIKLDDLTLNECRNRYDLPSYH--CHHALTDAQATAEL---LLAQCHQ 194

Query: 181 INFG 184
           I  G
Sbjct: 195 IGAG 198


>gi|149179899|ref|ZP_01858404.1| DNA polymerase III, alpha subunit [Bacillus sp. SG-1]
 gi|148852091|gb|EDL66236.1| DNA polymerase III, alpha subunit [Bacillus sp. SG-1]
          Length = 245

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 90/173 (52%), Gaps = 18/173 (10%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVEL-----LDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +FD+ETTG   +  D I+ IGA+++     LD     +TF   + P  +  S E  +  G
Sbjct: 65  IFDLETTGFFPEIGDEIVSIGAIKMQGNKILD----QKTFYEVINPL-QNVSLETKRFTG 119

Query: 65  IT-DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           +   +F+K K +      +F +F   +    +AH A FD+ F+   +++ +    +P   
Sbjct: 120 LRRTDFIKAK-TLPVGLKDFLEFC--KGTILVAHPASFDINFLQKRIRKWDLPSFEPEY- 175

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ID+ ++A+      +  L+ L K++   IS +++H AL D+ + ++V+ ++++
Sbjct: 176 IDSYALAKELLNEQKCYLDDLVKKF--QISEKTRHHALNDAIMTAEVFQELLI 226


>gi|146302714|ref|YP_001197305.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
 gi|146157132|gb|ABQ07986.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
          Length = 256

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 27/117 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS------------PEA 59
           FD+ETTG+D   DRI+EI              F+VF  PNG K S            P+ 
Sbjct: 12  FDLETTGIDIGKDRIVEIS------------IFKVF--PNGNKESKTWLVNPTIPIPPQT 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
             +HGITDE + ++P+F+ +     +   + +     ++ +FD+  +  EL R   D
Sbjct: 58  TAVHGITDEKVANEPTFAELAPLVHNMIKDSDLAGF-NSDRFDIPLLAEELLRAGVD 113


>gi|120436594|ref|YP_862280.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803]
 gi|117578744|emb|CAL67213.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803]
          Length = 258

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 10/161 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG +   DRI+EI  +++  +   N+    +L    R+   E + +HGIT+E + 
Sbjct: 12  FDLETTGTNISKDRIVEIAVLKV--FPNGNKESHTWLVNPEREIPAEVIAIHGITNEKVA 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
           ++P+F  +  +  D    +  +   +N+ +FD+  +  EL R + D  +     +D  +I
Sbjct: 70  NEPTFKELAQKIHDLI--KGCDLGGYNSNRFDIPLLVEELLRADIDFEMKNVVAVDVQTI 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             +K   +     S   ++         HGA  D+    +V
Sbjct: 128 FHKKEQRTL----SAAYQFYCGKELEGAHGAEADTEATYEV 164


>gi|116333325|ref|YP_794852.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus brevis ATCC 367]
 gi|116098672|gb|ABJ63821.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus brevis ATCC 367]
          Length = 178

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 9/116 (7%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI +  + + P+F  ++     FF +++   IAHNA FD G + + L+  N   L 
Sbjct: 50  VQIHGIHERDVANAPTFPEVWQHVAPFF-QRDRLVIAHNAPFDNGVLRSSLEHYN---LP 105

Query: 120 PSR--IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P+R   +DT+  +R+  P   N  L+++C    I + H   H AL DS   +++ +
Sbjct: 106 PARYLTLDTVKTSRKFFPEFPNHKLDTVCDELDIDLHHH--HNALDDSLACANILL 159


>gi|73662206|ref|YP_300987.1| exonuclease [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72494721|dbj|BAE18042.1| putative exonuclease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 184

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 9/155 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ET   + K   I  +G V+++++  T  +F   + PN    S + + +H I  E 
Sbjct: 7   IALDFETA--NGKRTSICAVGMVKVVNHQIT-ESFYTLVNPNDYF-SQQNIAVHSIHPEQ 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D P+F +++     F  +     +AHNA FD+  ++  +     D  + +    +L +
Sbjct: 63  VEDAPTFQTVYPYMLQFIGD--LPVVAHNAAFDMNVLHESISAFGFDTPNMTYFC-SLQL 119

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +RR   + R  LN + + Y +       H AL D+
Sbjct: 120 SRRTVENHRYGLNYMMQYYNLDF--HGHHDALNDA 152


>gi|27383129|ref|NP_774658.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27356303|dbj|BAC53283.1| blr8018 [Bradyrhizobium japonicum USDA 110]
          Length = 298

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 49/102 (48%), Gaps = 12/102 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR------TFQVFLCPNGRKNSPEALKLH 63
           I+ D ETTGLD + D IIE+G V+  DY+   R      TF  F  P+     PE   + 
Sbjct: 45  ILLDTETTGLDHRKDEIIELGMVK-FDYTPDGRIVGVRDTFAAFDEPSA-PIPPEITAIT 102

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           GITDE +  +    +  S F D         IAHN+ FD  F
Sbjct: 103 GITDEMVAGQRIDDAAVSAFVD----DAVITIAHNSGFDRKF 140


>gi|325297417|ref|YP_004257334.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
 gi|324316970|gb|ADY34861.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
          Length = 183

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 7/164 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ET     K   I E G + ++   K   T    + P G   S   +++HGI    
Sbjct: 7   IAIDFETA--TRKRASICEAG-ICVVRNGKVAETRSWLIRPEGNYYSYWNMQIHGIRPSD 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            ++ P F  I+++  ++  E     +AHNA FD+G I   LQ  +    D +    +L  
Sbjct: 64  TENAPEFPEIWTKITEYLGECPV-LVAHNAIFDIGCIRHSLQFYHIKKPDITYYC-SLRA 121

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           AR+ +    N L+ LC ++   I +R  H A  D+ + + ++++
Sbjct: 122 ARKLYNFDCNKLDYLCDQF--EIPYRLHHRAGDDAEMCARLFLR 163


>gi|332885444|gb|EGK05693.1| hypothetical protein HMPREF9456_02495 [Dysgonomonas mossii DSM
           22836]
          Length = 256

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 13/112 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           I FD+ETTG D+  DRI+E+  +++     +  KT R       P G      A  +HGI
Sbjct: 10  IFFDLETTGTDTVKDRIVELSYLKVYPNGKEEMKTRRINPEMPIPAG------ATAIHGI 63

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD 116
           +DE +KD P+F  I     D    +  +    N ++FD+  +  E  R + D
Sbjct: 64  SDEDVKDCPTFKQIAKSLAD--QMEGCDLAGFNSSRFDIPLLAEEFLRADVD 113


>gi|302334813|ref|YP_003800020.1| DNA polymerase III, epsilon subunit [Olsenella uli DSM 7084]
 gi|301318653|gb|ADK67140.1| DNA polymerase III, epsilon subunit [Olsenella uli DSM 7084]
          Length = 1001

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 12/169 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGL  ++  +IEI A  +       R FQ F+ P G    PE   L  I+D  
Sbjct: 58  VVLDTETTGLSFRDCELIEIAAARIRGGVVEER-FQTFVHPMG-PIPPEISALTHISDLD 115

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D PS     +   +F        +AHNA FD  F+  E     +D  D    IDTL++
Sbjct: 116 VTDAPSAVDAVAALSEFVAGDPV--LAHNATFDRTFV--ESVPGGRDVSD--NWIDTLAL 169

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +R   P  S + L  + + +G      + H A  D   L+ ++  M+V 
Sbjct: 170 SRIALPRLSSHRLADMARAFG---CDSATHRATADVEALAGMWRIMLVA 215


>gi|254507936|ref|ZP_05120065.1| exonuclease, RNase T and DNA polymerase III [Vibrio
           parahaemolyticus 16]
 gi|219549172|gb|EED26168.1| exonuclease, RNase T and DNA polymerase III [Vibrio
           parahaemolyticus 16]
          Length = 239

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 13/185 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGLDS+ D II IG V   L+    N+     + P  ++   +++ +HGIT  
Sbjct: 50  LAMDFETTGLDSEQDDIITIGTVPFTLNRVLINQAKHWTVRPR-KQLEEDSVIIHGITHS 108

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIIDTL 127
            + D P  S +F+E            + H  + +  F N A L RIN+    P  ++DT+
Sbjct: 109 DVLDAPDLSEVFAEI--LAQMHGRIMVVHYQRIEREFFNRALLTRINEGIEFP--VVDTM 164

Query: 128 SI-ARRKHPSSRNDLNSLCKRYGITI---SHRSKHG--ALLDSHLLSDVYIKMMVGGSQI 181
            +    +  S+   LN L  R   ++   + RS++G       H L+D      +  +QI
Sbjct: 165 QLETLVQQKSNGGLLNRLKGRKPASVRLSASRSRYGLPQYTPHHALTDAVATAELLQAQI 224

Query: 182 NFGFK 186
            + ++
Sbjct: 225 AYHYE 229


>gi|300933650|ref|ZP_07148906.1| DNA polymerase III subunit epsilon [Corynebacterium resistens DSM
           45100]
          Length = 226

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 13/149 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG D K  RI+    + +       R  Q  L   G +   +A  +HGIT E+ +
Sbjct: 16  FDLETTGTDPKTCRIVTSAMISI---EGRERKDQELLADPGVEIPEQATAVHGITTEYAR 72

Query: 72  DKPS-FSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +  S    + ++  +   E   + A  + +NA +D+  + A       D L    + D L
Sbjct: 73  ENGSPHDEVLAQTIETIREAWQRGATLVVYNAPYDLSVLRALEPSFTVDGL----VFDPL 128

Query: 128 SIARRKHP--SSRNDLNSLCKRYGITISH 154
            + R   P    +  L ++C+ YGI +++
Sbjct: 129 VVDRAMDPYRKGKRRLENVCEHYGIELTN 157


>gi|78777984|ref|YP_394299.1| exonuclease [Sulfurimonas denitrificans DSM 1251]
 gi|78498524|gb|ABB45064.1| Exonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 247

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 15/131 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I+ D ETTG+  + DR+I++G + L    +     Q          S  A++ HGIT 
Sbjct: 4   RYIILDTETTGI-GEEDRVIQLGFIVL---GEREIEVQNEFFSTSVPISFGAMETHGITP 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           E L  KP      S  +   NE N++    I HNAKFD+  +  E  +         R+I
Sbjct: 60  EMLDGKPLCKD--STSYRRLNELNSDENYLIIHNAKFDIDMLQKEGFKTQ------MRVI 111

Query: 125 DTLSIARRKHP 135
           DTL +A+   P
Sbjct: 112 DTLRVAKHLLP 122


>gi|327440671|dbj|BAK17036.1| DNA polymerase III, epsilon subunit [Solibacillus silvestris
           StLB046]
          Length = 353

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 107/232 (46%), Gaps = 32/232 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDE 68
           I  DIE   +  K   IIEIGAV+ L    T  TF   + P   +K +    KL GIT E
Sbjct: 8   ISIDIEAALIRGKQ-YIIEIGAVKWLP-DGTTETFTQLIQPYKFKKLNAHIQKLTGITTE 65

Query: 69  FLKDKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDPSRII 124
            L D PSF   F++F  W    +Q+  ++    +FD   +  EL R  I  D L P  +I
Sbjct: 66  QLVDAPSFKEAFTKFKRW---CKQDYVFLTF-GEFDRKVLEEELSRNYIKNDCLYP--MI 119

Query: 125 D-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           D      ++   ++ PS    L  L  + G  + + ++H AL D+  L  +++K  V G 
Sbjct: 120 DFQQKYMIANGLKEQPS----LGGLMAQLG--LENETQHRALADAASLLSIFVK--VDGD 171

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           +I    +TN+          + N  +L+    L    T  +++++  TIQ++
Sbjct: 172 KIIEQQQTNDFILL------LTNFKMLETTYELVISATNCKIEDNGITIQSM 217


>gi|330811344|ref|YP_004355806.1| ribonuclease T [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379452|gb|AEA70802.1| Ribonuclease T [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 225

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI A  + +D   +   + T+   + P  G      AL+  G
Sbjct: 33  VVVDVETGGFNSATDALLEIAATTIGMDEKGFVFPDHTYFFRVEPFEGANVEAAALEFTG 92

Query: 65  I-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114
           I  D  L+    ++ + + IF              A  + HN+ FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 152

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+   I    R  H A  D+   ++++  +
Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAADIDFDGREAHSARYDTEKTAELFCGI 210

Query: 175 M 175
           +
Sbjct: 211 V 211


>gi|322497434|emb|CBZ32508.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1430

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FDIETTGL+   D I+E+   + ++    N TF   + P  R  +P  + +H IT+
Sbjct: 764 RIVFFDIETTGLNPSTDAIVEVAMFDPIE----NSTFHTLVNPQ-RSITPRTVGIHHITN 818

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
             ++D P+   +      +     A +  H     VG
Sbjct: 819 AMVRDAPTVDVVAKSIGQYLRLDKASYNPHEILVLVG 855


>gi|146080581|ref|XP_001464035.1| mitochondrial DNA polymerase I protein B [Leishmania infantum
           JPCM5]
 gi|134068125|emb|CAM66410.1| putative mitochondrial DNA polymerase I protein B [Leishmania
           infantum JPCM5]
          Length = 1430

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FDIETTGL+   D I+E+   + ++    N TF   + P  R  +P  + +H IT+
Sbjct: 764 RIVFFDIETTGLNPSTDAIVEVAMFDPIE----NSTFHTLVNPQ-RSITPRTVGIHHITN 818

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
             ++D P+   +      +     A +  H     VG
Sbjct: 819 AMVRDAPTVDVVAKSIGQYLRLDKASYNPHEILVLVG 855


>gi|325956898|ref|YP_004292310.1| ATP-dependent DNA helicase [Lactobacillus acidophilus 30SC]
 gi|325333463|gb|ADZ07371.1| ATP-dependent DNA helicase [Lactobacillus acidophilus 30SC]
 gi|327183677|gb|AEA32124.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1118]
          Length = 926

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 11  VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG   +N   II+ G   ++   K  +T+   + P+ R+     + L GI++  
Sbjct: 12  VVDLETTGTQRENGHHIIQFGCA-IIKNLKVVKTYSFMINPH-REIPQSVVNLTGISNGD 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++ +  F     +       QN  ++AHN  FD+ F+N EL +   D L  ++ IDT+ +
Sbjct: 70  VQKQKDFDFYAPKIVKIL--QNTVFVAHNVDFDLPFLNYELTQHGYDAL-TNKAIDTVEL 126

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+   P+     L+ L  +  + I H + H A  D++  + + IK++
Sbjct: 127 AKIAFPTLPSYKLSDLTAQ--LEIKHLNPHKADSDAYGTAILLIKII 171


>gi|319955723|ref|YP_004166990.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM
           14237]
 gi|319424383|gb|ADV51492.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM
           14237]
          Length = 456

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 7/148 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG     + I EI A+   D  +    F   + P  ++  P  + L GIT++ L
Sbjct: 4   ILDIETTGGKYNEEGITEI-AIHKFDGHQVVDQFISLVNPE-KEIQPFVVNLTGITNKML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P F  +     +    +    IAHNA+FD   +  E +R+  +     + I T+ +A
Sbjct: 62  VTAPKFYEVAKRIVEI--TEGTVLIAHNAQFDYRILRTEFRRLGFNF--ERKTICTVELA 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK 157
           ++  P + +  L  L +  GI +S R +
Sbjct: 118 QKLLPEAESYSLGKLVRSLGIPVSDRHR 145


>gi|260101291|ref|ZP_05751528.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075]
 gi|260084876|gb|EEW68996.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075]
          Length = 929

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 15/170 (8%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG    K   II+ G   ++   K  +T+   + P+ R+     + L GI +E 
Sbjct: 12  VVDLETTGTQREKGHHIIQFGCA-IIKNMKVVKTYSFMINPH-REIPQSVVNLTGIHNED 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++ K  FS    +  +    +   ++AHN  FD+ F+N EL +   + L  ++ IDT+ +
Sbjct: 70  VQGKDDFSVYAPKIIEIL--KGTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAIDTVEL 126

Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+   P+      +DL +  K     I H + H A  D++  + + IK++
Sbjct: 127 AKIAFPTLPSYKLSDLTAQLK-----IKHLNPHKADSDAYGTAVLLIKII 171


>gi|258648468|ref|ZP_05735937.1| exonuclease [Prevotella tannerae ATCC 51259]
 gi|260851225|gb|EEX71094.1| exonuclease [Prevotella tannerae ATCC 51259]
          Length = 256

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 35/185 (18%)

Query: 1   MIRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---- 55
           M + N  R I+F DIE TGL    DRI+E+  +++               P+GR+     
Sbjct: 1   MTQLNLTRPIIFFDIEATGLQIARDRIVELSYIKVF--------------PDGREESKTL 46

Query: 56  --------SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFI 106
                   S EA  ++GI DE + D P+F     E    F  Q+ +    N+  FDV  +
Sbjct: 47  RFNPEMHISAEATAVNGIKDEDVADCPTFKEKSGELTAIF--QSCDLAGFNSNVFDVPML 104

Query: 107 NAELQRINKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
             E  R   D  +  S+++D  +I  +  P  RN L +  K Y     H + H A+ D+ 
Sbjct: 105 VEEFARAGSDFDITKSKLVDVQTIYHKLEP--RN-LIAAYKFYCNKDLHNA-HTAMADTQ 160

Query: 166 LLSDV 170
              +V
Sbjct: 161 ATYEV 165


>gi|78484942|ref|YP_390867.1| ribonuclease T [Thiomicrospira crunogena XCL-2]
 gi|78363228|gb|ABB41193.1| RNAse T [Thiomicrospira crunogena XCL-2]
          Length = 207

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D + + +IEI  V L   S    + ++T Q  + P  G +    ALK  G
Sbjct: 17  VVVDVETAGFDPQTNALIEIAIVTLKMNSDGTIERDQTVQANVLPFKGSQLDKSALKFIG 76

Query: 65  ITDE------FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN- 114
           + D        + +K +    F+       E +   A  + HNA FD+ F+ A   R   
Sbjct: 77  VEDPTHPFRMAVSEKDALEKCFAPIRQLLKETDCSRAILVGHNAFFDLSFVKAAADRCKV 136

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           K P       DT+S+A   +   +  L    +   I   +   H A  D+   +D++ K+
Sbjct: 137 KSPFHEFSTFDTVSLAGLAY--GQTVLAKAVQMAEIEWDNSKAHSAEYDTIKTADLFCKI 194

Query: 175 M 175
           +
Sbjct: 195 V 195


>gi|330822675|ref|YP_004385978.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601]
 gi|329308047|gb|AEB82462.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601]
          Length = 209

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 8/148 (5%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+  ++  R  E+ A+ L++  +    F   +   G    P   +L GIT+  
Sbjct: 7   VIDFETTGMTPAQGARATEV-AIVLMEGERVVDRFASLM-KTGVWIPPFITRLTGITNAM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P+  S+  E   F    +A  +AHNA FD  F  +EL+    D   P     T+ +
Sbjct: 65  VDAAPAAESVMREAARFVG--DAPMVAHNAAFDSRFWQSELRHAGLD--APHPFACTVLL 120

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRS 156
           +RR +P +  + L  L    G+  + R+
Sbjct: 121 SRRIYPDAPSHSLGRLTDHLGLPRTGRA 148


>gi|123442082|ref|YP_001006065.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089043|emb|CAL11861.1| putative exodeoxyribonuclease [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 220

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 27/170 (15%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL+     I+EI +++++D + +N      + P+ R  S +A+ +H IT+E +
Sbjct: 5   VIDTETYGLEGG---IVEIASIDVMDGALSN-PMSDLVSPD-RPISLDAMVIHHITEEMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP  +    ++     + +  ++AHNA FD G +          P    + I TL +A
Sbjct: 60  EGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICTLKLA 104

Query: 131 RRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175
           R  +P  ++    L  RY + ++     +   H AL D ++ + +  ++M
Sbjct: 105 RMLYPDIKHSNQYL--RYALRLNVSVPDNLYPHRALYDCYVTAALLQRIM 152


>gi|315038483|ref|YP_004032051.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1112]
 gi|312276616|gb|ADQ59256.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1112]
          Length = 926

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 11  VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG   +N   II+ G   ++   K  +T+   + P+ R+     + L GI++  
Sbjct: 12  VVDLETTGTQRENGHHIIQFGCA-IIKNLKVVKTYSFMINPH-REIPQSVVNLTGISNGD 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++ +  F     +       QN  ++AHN  FD+ F+N EL +   D L  ++ IDT+ +
Sbjct: 70  VQKQKDFDFYAPKIVKIL--QNTVFVAHNVDFDLPFLNYELTQHGYDAL-TNKAIDTVEL 126

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+   P+     L+ L  +  + I H + H A  D++  + + IK++
Sbjct: 127 AKIAFPTLPSYKLSDLTAQ--LEIKHLNPHKADSDAYGTAILLIKII 171


>gi|312872015|ref|ZP_07732095.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2062A-h1]
 gi|312873705|ref|ZP_07733751.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2052A-d]
 gi|315653310|ref|ZP_07906232.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners ATCC 55195]
 gi|325911899|ref|ZP_08174303.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 143-D]
 gi|311090805|gb|EFQ49203.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2052A-d]
 gi|311092468|gb|EFQ50832.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2062A-h1]
 gi|315489235|gb|EFU78875.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners ATCC 55195]
 gi|325476405|gb|EGC79567.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 143-D]
          Length = 177

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 9/126 (7%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +K+HGIT   +KD P+   ++ +    F +     +AHNA+FD   +   L++ N    +
Sbjct: 50  IKIHGITANDVKDAPTMDEVWPKIRLLF-QPGMLVVAHNARFDCNVMKKSLKKYNI--AE 106

Query: 120 PSRI-IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK--MM 175
           P  + IDTL+ +R   P+ +N  L+++  +  I + H   H AL DS   +++ IK    
Sbjct: 107 PHYLTIDTLATSRALIPNLKNYRLDTVSNQLNIDLWHH--HNALSDSEACAEILIKQNQQ 164

Query: 176 VGGSQI 181
            G  QI
Sbjct: 165 FGDEQI 170


>gi|325275194|ref|ZP_08141161.1| ribonuclease T [Pseudomonas sp. TJI-51]
 gi|324099681|gb|EGB97560.1| ribonuclease T [Pseudomonas sp. TJI-51]
          Length = 224

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 29/187 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-----------GRKNSPE 58
           +V D+ET G +S  D ++EI AV +    K       FL P            G      
Sbjct: 32  VVVDVETGGFNSATDALLEIAAVTIGMDEKG------FLFPEHTYFHRVEPFEGANIEAA 85

Query: 59  ALKLHGI-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAEL 110
           AL+  GI  D  L+    ++ + + IF              A  + HN+ FD+GF+NA +
Sbjct: 86  ALEFTGIKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAV 145

Query: 111 QR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            R  + ++P  P    DT ++A   +   +  L   C+   I    R  H A  D+   +
Sbjct: 146 ARNDVKRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTA 203

Query: 169 DVYIKMM 175
           +++  ++
Sbjct: 204 ELFCGIV 210


>gi|295693033|ref|YP_003601643.1| ATP-dependent DNA helicase ding [Lactobacillus crispatus ST1]
 gi|295031139|emb|CBL50618.1| ATP-dependent DNA helicase DinG [Lactobacillus crispatus ST1]
          Length = 926

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 13/170 (7%)

Query: 11  VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG   +N   II+ G   ++   K  +T+   + P+ R+     + L GI D+ 
Sbjct: 12  VVDLETTGTQRENGHHIIQFGCA-IIKNLKVVKTYSFLINPH-REIPQSVVNLTGIHDQD 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +  F     +       QN  ++AHN  FD+ F+N EL +   + L  ++ IDT+ +
Sbjct: 70  VAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAIDTVEL 126

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH----LLSDVYIKM 174
           A+   P+     L+ L  + G  I H   H A  D++    LL +++ K+
Sbjct: 127 AKIAFPTFPSYKLSDLTTQLG--IKHLDPHKADSDAYGTAVLLLEIFNKL 174


>gi|257466613|ref|ZP_05630924.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917768|ref|ZP_07914008.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691643|gb|EFS28478.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563]
          Length = 186

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 23/184 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65
           M+ +  D ETTGL  ++  II++ A+  +D  +   T  ++  P    + S EAL +   
Sbjct: 1   MKILYLDTETTGLTYRS-TIIQLAAIVEID-GEIKETINLYCAPFPDSDISEEALSITKF 58

Query: 66  TDE--FLKDKP-----SFSSIFSEFWDFFNEQNA-EWIAHNAKFDVGFINAELQRIN--- 114
           T E  F  D P     +F+ I  ++ D +N+ +    I HN KFD+  +     R N   
Sbjct: 59  TREEIFQFDSPQVVCQTFTQILGKYVDKYNKNDKFIVIGHNVKFDLDMLRNWAYRCNERF 118

Query: 115 -------KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                  K+  D       L I  +   +  N L +LC+ + I +   + H AL D+   
Sbjct: 119 IASYIDFKNEFDTLAFTKCLKILGKLPQTENNKLETLCQAFQIPL--ENAHNALADTIAA 176

Query: 168 SDVY 171
            D+Y
Sbjct: 177 KDLY 180


>gi|307327637|ref|ZP_07606822.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
 gi|306886749|gb|EFN17750.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
          Length = 254

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 15/155 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE-- 68
            FD+ETTG+D ++DRI+    V L    + +      L P G     EA  +HGI+ E  
Sbjct: 10  AFDLETTGIDIESDRIVTAALVFLEPDGRVSDERTWMLDP-GVVIPEEAAAIHGISTEQA 68

Query: 69  ---FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122
               +   P+ + I +             +  NA++D+  ++ E +R    PL   +   
Sbjct: 69  RKHGVPAGPAVAEISTAVAQLLR-VGTPLVIMNARYDLSLLDRECRRHQVAPLSARQGAR 127

Query: 123 ---IIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
              +ID L + +   ++   R  L +LC  YG+ +
Sbjct: 128 LHPVIDPLVLDKHADRYRKGRRTLQALCAHYGVPL 162


>gi|322489448|emb|CBZ24706.1| mitochondrial DNA polymerase I protein B,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 1429

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FDIETTGL+   D I+E+   + ++    N TF   + P  R  +P  + +H IT+
Sbjct: 763 RIVFFDIETTGLNPSTDAIVEVAMFDPIE----NTTFHTLVNPQ-RSITPRTVGIHHITN 817

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
             ++D P+   +      +     A +  H     VG
Sbjct: 818 AMVRDAPTVDVVAKSIGQYLRLDKASYNPHEILVLVG 854


>gi|317010079|gb|ADU80659.1| DNA polymerase III subunit epsilon [Helicobacter pylori India7]
          Length = 287

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 10/152 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEFLK 71
           D+ETTG       I+EIGAV++      NR F+  +     K+ P+ +  L GI  E   
Sbjct: 77  DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYISDLTGIAYEDTL 132

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + PS      +   F    N+ ++AHNA FD  F+          PL   ++  TL +++
Sbjct: 133 NAPSVHEALQKLRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189

Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161
           R   S R  L+ L     +GI +SHR+   AL
Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221


>gi|116494505|ref|YP_806239.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei ATCC 334]
 gi|227535524|ref|ZP_03965573.1| DNA-directed DNA polymerase III [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239631264|ref|ZP_04674295.1| DNA polymerase III alpha chain protein [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|116104655|gb|ABJ69797.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei ATCC 334]
 gi|227186846|gb|EEI66913.1| DNA-directed DNA polymerase III [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239525729|gb|EEQ64730.1| DNA polymerase III alpha chain protein [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 180

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 31  AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ 90
           A+ ++  +K   +F   + P  + ++ + + +HGIT E ++D+P+F  ++     F+   
Sbjct: 22  ALVVVQQNKVVDSFYTLINPQMQFDA-QNIHIHGITPEMVQDQPTFDQVWPHIQMFYTPG 80

Query: 91  NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYG 149
                AHNA FDV  +   L R         ++IDT+  +R+  P   N  L+++     
Sbjct: 81  RI-VTAHNAPFDVSVMRLTLDRYGIA-APRYQVIDTVKTSRQFLPKLPNHRLDTVSAALH 138

Query: 150 ITISHRSKHGALLDSHLLSDVYI 172
           I + H   H AL DS+  + + I
Sbjct: 139 IPLEHH--HNALADSYACARILI 159


>gi|157866092|ref|XP_001681752.1| mitochondrial DNA polymerase I protein B [Leishmania major strain
           Friedlin]
 gi|68125051|emb|CAJ02395.1| putative mitochondrial DNA polymerase I protein B [Leishmania major
           strain Friedlin]
          Length = 1429

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FDIETTGL+   D I+E+   + ++    N TF   + P  R  +P  + +H IT+
Sbjct: 763 RVVFFDIETTGLNPSTDAIVEVAMFDPIE----NSTFHTLVNPQ-RPITPRTVGIHHITN 817

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
             ++D P+   +      +     A +  H     VG
Sbjct: 818 AMVRDAPTVDVVAKSIGQYLRLDKASYNPHEILVLVG 854


>gi|332877643|ref|ZP_08445386.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684392|gb|EGJ57246.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 258

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 7/138 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D   DRI+EI  +++  Y   N+  + +L          A  +HGITDE + 
Sbjct: 12  FDLETTGIDITKDRIVEISILKV--YPNGNKESKTWLVNPTIPIPAMASAVHGITDEKVA 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++P+F  +  +  +    ++++   +N+ +FD+  +  E+ R   D    +R+  T+ I 
Sbjct: 70  NEPTFKELAKQIHNMI--KDSDLAGYNSDRFDIPLLAEEMLRAGVDFDLGNRV--TVDIQ 125

Query: 131 RRKHPSSRNDLNSLCKRY 148
              H   +  L++  K Y
Sbjct: 126 TIFHKMEQRTLSAAYKFY 143


>gi|261416032|ref|YP_003249715.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372488|gb|ACX75233.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326359|gb|ADL25560.1| putative DnaQ family exonuclease/DinG family helicase [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 905

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 11/169 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTGLD + D IIE+  V   +  +        + P+  +  P    L GI+   
Sbjct: 8   VALDLETTGLDFEKDEIIEVALVR-FENGEPKENLDFLVKPSAVELRPFIETLTGISKAD 66

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+    F++I  +   F    +   +AHNA FD  F+     ++     D     D+L++
Sbjct: 67  LESASDFATIAGQICSFVG--DLPIVAHNAVFDSKFLKQTFTKVGIS-YDSHVFWDSLTL 123

Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R   +  P+ R  L++L +   + I     H AL D+     +++K +
Sbjct: 124 SRIAFQDVPNHR--LDTLVQE--LNIERSRAHRALPDADACGRLFVKAL 168


>gi|256843260|ref|ZP_05548748.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           crispatus 125-2-CHN]
 gi|256614680|gb|EEU19881.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           crispatus 125-2-CHN]
          Length = 926

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 13/170 (7%)

Query: 11  VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG   +N   II+ G   ++   K  +T+   + P+ R+     + L GI D+ 
Sbjct: 12  VVDLETTGTQRENGHHIIQFGCA-IIKNLKVVKTYSFLINPH-REIPQSVVNLTGIHDQD 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +  F     +       QN  ++AHN  FD+ F+N EL +   + L  ++ IDT+ +
Sbjct: 70  VAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAIDTVEL 126

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH----LLSDVYIKM 174
           A+   P+     L+ L  + G  I H   H A  D++    LL +++ K+
Sbjct: 127 AKIAFPTFPSYKLSDLTTQLG--IKHLDPHKADSDAYGTAVLLLEIFNKL 174


>gi|218670823|ref|ZP_03520494.1| DNA polymerase III subunit epsilon [Rhizobium etli GR56]
          Length = 164

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 50/107 (46%), Gaps = 16/107 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+ +ND IIEIGAV     D         ++  L    R   PE  +L GI
Sbjct: 65  VILDTETTGLNHRNDEIIEIGAVAFTFDDDRAIGDIVGIYGGLQQPSRPIPPEITRLTGI 124

Query: 66  TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           TD  ++    D  S S++  E  D         IAHNA FD  F  A
Sbjct: 125 TDAMVEGQVIDMRSLSALI-EPADLI-------IAHNAGFDRPFCEA 163


>gi|301066020|ref|YP_003788043.1| DNA polymerase III subunit epsilon [Lactobacillus casei str. Zhang]
 gi|300438427|gb|ADK18193.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei str. Zhang]
          Length = 180

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 31  AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ 90
           A+ ++  +K   +F   + P  + ++ + + +HGIT E ++D+P+F  ++     F+   
Sbjct: 22  ALVVVQQNKVVDSFYTLINPQMQFDA-QNIHIHGITPEMVQDQPTFDQVWPHIQMFYTPG 80

Query: 91  NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYG 149
                AHNA FDV  +   L R         ++IDT+  +R+  P   N  L+++     
Sbjct: 81  RI-VTAHNAPFDVSVMRLTLDRYGIA-APRYQVIDTVKTSRQFLPKLPNHRLDTVSAALH 138

Query: 150 ITISHRSKHGALLDSHLLSDVYI 172
           I + H   H AL DS+  + + I
Sbjct: 139 IPLEHH--HNALADSYACARILI 159


>gi|227878664|ref|ZP_03996579.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01]
 gi|256850383|ref|ZP_05555811.1| ATP-dependent DNA helicase [Lactobacillus crispatus MV-1A-US]
 gi|262046469|ref|ZP_06019431.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           crispatus MV-3A-US]
 gi|227861728|gb|EEJ69332.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01]
 gi|256712780|gb|EEU27773.1| ATP-dependent DNA helicase [Lactobacillus crispatus MV-1A-US]
 gi|260573340|gb|EEX29898.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           crispatus MV-3A-US]
          Length = 926

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 13/170 (7%)

Query: 11  VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG   +N   II+ G   ++   K  +T+   + P+ R+     + L GI D+ 
Sbjct: 12  VVDLETTGTQRENGHHIIQFGCA-IIKNLKVVKTYSFLINPH-REIPQSVVNLTGIHDQD 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +  F     +       QN  ++AHN  FD+ F+N EL +   + L  ++ IDT+ +
Sbjct: 70  VAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAIDTVEL 126

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH----LLSDVYIKM 174
           A+   P+     L+ L  + G  I H   H A  D++    LL +++ K+
Sbjct: 127 AKIAFPTFPSYKLSDLTTQLG--IKHLDPHKADSDAYGTAVLLLEIFNKL 174


>gi|293380924|ref|ZP_06626958.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus crispatus 214-1]
 gi|290922499|gb|EFD99467.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus crispatus 214-1]
          Length = 926

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 13/170 (7%)

Query: 11  VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG   +N   II+ G   ++   K  +T+   + P+ R+     + L GI D+ 
Sbjct: 12  VVDLETTGTQRENGHHIIQFGCA-IIKNLKVVKTYSFLINPH-REIPQSVVNLTGIHDQD 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +  F     +       QN  ++AHN  FD+ F+N EL +   + L  ++ IDT+ +
Sbjct: 70  VAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAIDTVEL 126

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH----LLSDVYIKM 174
           A+   P+     L+ L  + G  I H   H A  D++    LL +++ K+
Sbjct: 127 AKIAFPTFPSYKLSDLTTQLG--IKHLDPHKADSDAYGTAVLLLEIFNKL 174


>gi|229187939|ref|ZP_04315044.1| exonuclease [Bacillus cereus BGSC 6E1]
 gi|228595536|gb|EEK53251.1| exonuclease [Bacillus cereus BGSC 6E1]
          Length = 181

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N+ + ++ D ETTGL  + D+IIEI  ++L     T +     L         EA  +HG
Sbjct: 21  NRDQFVILDTETTGLTLR-DQIIEICVIDL-----TGKILLNSLVKPTINIPAEAASIHG 74

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           IT+E + D PS+  I+ E  +         + +NA+FD+G I +
Sbjct: 75  ITNEKVHDAPSWIEIYKELCEV--TAGKTLLIYNAEFDLGMIES 116


>gi|86160112|ref|YP_466897.1| exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776623|gb|ABC83460.1| Exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 200

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 80/176 (45%), Gaps = 17/176 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF 69
            D+ET GLD++ D I+ +G + + + + +    ++  + P  G+  SP +++ H +    
Sbjct: 16  LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEQGKAVSPRSVQAHQLVAGD 75

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
            +  P+ + +  E       + A  + H+A  ++GF+    +    + P  P  ++DT+ 
Sbjct: 76  TRGAPALAEVLPELERRL--RGAVLLVHHAPIELGFLKRAFRAAGLRWPAPP--VVDTVK 131

Query: 129 IA-------RRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +        RR+ P    D   LN    R  + +     H AL D+   +++++ +
Sbjct: 132 LLLRLDARERRRFPELPADPPVLNLSAARRRLGLPDYQAHDALTDAVATAELFLVL 187


>gi|77360920|ref|YP_340495.1| hypothetical protein PSHAa1996 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875831|emb|CAI87052.1| conserved protein of unknown function; putative enzyme
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 730

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 10/164 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL- 60
           I  N++  +V D+ETTG     ++I EIG V++  + K   T+   + P  +++ P  + 
Sbjct: 561 IDPNRIYSVV-DLETTGALKGGNKITEIGLVKV-QHGKVIDTWTTLVNP--QRHIPGFIT 616

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GI+D  + + P F+ I            + ++AHN  FD GFI  E + + K P   
Sbjct: 617 SLTGISDSMVSNAPVFADIVKPLMA--KLAGSIFVAHNVNFDYGFIKKECE-MAKVPFKM 673

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            ++   +   +         L +L K + + ++  S H AL D+
Sbjct: 674 PKLCTVVESRKAFAGLKSYSLGNLSKHFNLNLT--SHHRALADA 715


>gi|41057226|ref|NP_958252.1| hypothetical protein VWBp10 [Streptomyces phage VWB]
 gi|39656049|gb|AAR29700.1| hypothetical protein [Streptomyces phage VWB]
          Length = 263

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 21/188 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +K R + FD+ETTG+D + DRI+   A++L   ++   T + +L   G +    A  +HG
Sbjct: 3   HKARMVAFDLETTGVDVEQDRIVTAAAIDL--GAEKPLTLE-WLADPGIEIPEGATAVHG 59

Query: 65  ITDEFLKDKPSFS----SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKD 116
           IT E  ++    +       +E            + HN  +D+  ++ E +R    + +D
Sbjct: 60  ITTEHAREHGERAHDVVDQVAETLALRVRDGVPVVGHNVPYDLTLLDRECRRYELPLLQD 119

Query: 117 PLD--PSRIIDTLSIARRKHP--------SSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            LD  P  +IDT  + +   P             L +L + Y +     + HG   D+ +
Sbjct: 120 RLDGTPLHVIDTRVLDQHCLPYRKRVSETQGARQLITLAQVYSLPWDAEAAHGCSYDALM 179

Query: 167 LSDVYIKM 174
            + +  ++
Sbjct: 180 AARIAYRI 187


>gi|307709092|ref|ZP_07645551.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK564]
 gi|307620038|gb|EFN99155.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK564]
          Length = 816

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 10/166 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D  K    +   + P+   ++    +L G+TD
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIED-GKIVDHYSTDVNPHEPLDA-HIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNPR--VDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 120 ELAQVFFPEMEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|306823007|ref|ZP_07456383.1| epsilon subunit family exonuclease [Bifidobacterium dentium ATCC
           27679]
 gi|304553639|gb|EFM41550.1| epsilon subunit family exonuclease [Bifidobacterium dentium ATCC
           27679]
          Length = 186

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 10/106 (9%)

Query: 11  VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEAL-KLHGITD 67
           + D ETTGL  +    IIEIGA+ +   ++  R  F+  + P  ++  PE + +L GI+D
Sbjct: 1   MLDTETTGLHPEEGATIIEIGALLVTPGNENARPRFEQLVDP--QRPLPEFISRLTGISD 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINA 108
             L++KP+  +    F  + ++     +    IAHNA+FD+GF++A
Sbjct: 59  GMLRNKPTADAAMLRFHQWLDDVWPAGRPLTVIAHNAEFDIGFLDA 104


>gi|126174849|ref|YP_001050998.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS155]
 gi|160875861|ref|YP_001555177.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS195]
 gi|125998054|gb|ABN62129.1| Exonuclease, RNase T and DNA polymerase III [Shewanella baltica
           OS155]
 gi|160861383|gb|ABX49917.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS195]
 gi|315268052|gb|ADT94905.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS678]
          Length = 228

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 29/186 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +  D+E TGL+ + D+I+ IG V     E+       +  Q+      R +  ++  +HG
Sbjct: 43  MAMDLEMTGLNPQQDQILSIGLVPIERGEIPLARAEQKLVQI------RGSVGQSATIHG 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLD-PSR 122
           I D  L    +  +     W F N+      +AH+A  D  F+  +L  I    L  P+ 
Sbjct: 97  ILDNHLVQAVTIEAAMG--W-FINQTYGRVLVAHHAPLDCRFLQQDLLAIYHQALVLPA- 152

Query: 123 IIDTLSIAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            IDTL + R    R+H   +     L +  +RYG+ I   + H AL D+    ++ +  M
Sbjct: 153 -IDTLMLERHRLLREHSVIKEGSLRLGACRERYGLPIY--TAHSALTDALACGELLLAQM 209

Query: 176 --VGGS 179
             +GG+
Sbjct: 210 AAMGGA 215


>gi|333023692|ref|ZP_08451756.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
 gi|332743544|gb|EGJ73985.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
          Length = 239

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 17/165 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI-TDEFL 70
           FD+ETTG D + DRI+   AV  LD S      + +L   G +   EA  +HGI T    
Sbjct: 11  FDLETTGTDVEQDRIV-TAAVIRLDSSGAVAHTRTWLLDPGVEIPAEATAIHGIPTARAR 69

Query: 71  KDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPL------DPS 121
            D        +E  +    +       +  NA++D+  ++ E +R     L      +P+
Sbjct: 70  ADGAPARGAVAEITEALAAELRVGTPLVVMNARYDLSLLDRECRRHGVPALAELLGAEPA 129

Query: 122 RIIDTLSI---ARRKHPSSRNDLNSLCKRYGITI--SHRSKHGAL 161
            +ID L +   A R    SR  L +LC  Y + +  +H ++  AL
Sbjct: 130 PVIDPLVLDKHADRYRRGSRV-LAALCAHYDVRLDTAHDARSDAL 173


>gi|213618910|ref|ZP_03372736.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 218

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 22/154 (14%)

Query: 26  IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85
           I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  + DKP    +   ++ 
Sbjct: 2   IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMVADKPWIEDVIPLYY- 58

Query: 86  FFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSL 144
                 +EW +AHNA FD   +          P  P   I T+ ++RR  P  +    +L
Sbjct: 59  -----GSEWYVAHNASFDRRVL----------PELPGEWICTMKLSRRLWPGIKYSNMAL 103

Query: 145 CKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
            K   +++        H AL D ++ + + I +M
Sbjct: 104 YKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 137


>gi|332829625|gb|EGK02271.1| hypothetical protein HMPREF9455_01541 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 256

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 29/120 (24%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN------------SP 57
           + FD+ETTG D+  DRI+EI  +++               PNG++              P
Sbjct: 10  VFFDLETTGTDTVKDRIVEISYLKVY--------------PNGKQEVKTKRLNPEMPIPP 55

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD 116
            A  +HGI+DE +KD P+F  I     D    +  +    N ++FD+  +  E  R   D
Sbjct: 56  GATAVHGISDEDVKDCPTFKQIAKSLAD--QMEGCDLAGFNSSRFDIPLLAEEFLRAGVD 113


>gi|330898573|gb|EGH29992.1| ribonuclease T [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 186

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 17/156 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV + +D   +     T+   + P  G      AL+  G
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92

Query: 65  I-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114
           I  D  L+    ++ + + IF              A  + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150
           ++P  P    DT ++A   +   +  L   C+  GI
Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGI 186


>gi|239928182|ref|ZP_04685135.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291436512|ref|ZP_06575902.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291339407|gb|EFE66363.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
          Length = 238

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 15/154 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG D + DRI+   AV  L+        + +L   G     +A  +HGI  E  +
Sbjct: 12  FDLETTGTDIETDRIV-TAAVVRLEPDGAVSAERTWLLDPGVVIPEQAAAIHGIPTEHAR 70

Query: 72  DK--PSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLD------P 120
               P+  +I  E      E        +  NA++D+  ++ E +R   + L       P
Sbjct: 71  AHGVPAPRAI-EEITRAVAEVLRAGTPLVVMNARYDLSLLDRECRRYGLESLSERLGAVP 129

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
           S ++D L I +   ++   +  L++LC  YG+++
Sbjct: 130 SPVVDPLVIDKHVDQYRKGKRALHALCAYYGVSL 163


>gi|153006661|ref|YP_001380986.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030234|gb|ABS28002.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
          Length = 200

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 21/187 (11%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC----PNGRKNSPEALKLHGITD 67
            D+ET GLD++ D II IG + +     T R  + +      P GR   P++++ H +  
Sbjct: 16  LDLETGGLDARRDPIIAIGMLPI--RHGTLRLGEAYYSLVRPPPGRIIDPDSVRAHQLVA 73

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L++ P+   +  E      E     + H+   DV F+    +R       P R++DT+
Sbjct: 74  GELREAPAIGEVLREVDRRLRE--GVLLVHHRALDVAFLKDAYRRCGMRWPAP-RVVDTV 130

Query: 128 SI---ARRKHPSSRNDLNSLCKRYGITISHR-------SKHGALLDSHLLSDVYIKM--M 175
            +   A+R+ P     L  +     +T + R         H AL D+   +++++ +  +
Sbjct: 131 DLLIRAKRRSPFKDPHLPPVLPVLNLTRARREYGLPDYQAHDALSDAIAAAELFLVLRSV 190

Query: 176 VGGSQIN 182
           VG  ++ 
Sbjct: 191 VGARRLR 197


>gi|301301275|ref|ZP_07207430.1| exonuclease [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851151|gb|EFK78880.1| exonuclease [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 177

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 7/125 (5%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGIT++ +++ PSF  ++    +FF   N   +AHNA FD   +   L+  +   L 
Sbjct: 50  IQVHGITEKQVQNAPSFPELWPHIQNFFTPNNL-IVAHNASFDSSVLLRTLEHYDIT-LP 107

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMV 176
             +++DTL  +++      N  L+++C    I + H   H AL DS   +++  Y   + 
Sbjct: 108 HYQLLDTLRTSKKFFKDLENHKLDTICNNLNIDLKHH--HNALFDSTACAEILLYQANLF 165

Query: 177 GGSQI 181
           G  Q+
Sbjct: 166 GEDQL 170


>gi|91079959|ref|XP_969470.1| PREDICTED: similar to three prime repair exonuclease 1 [Tribolium
           castaneum]
 gi|270003252|gb|EEZ99699.1| hypothetical protein TcasGA2_TC002459 [Tribolium castaneum]
          Length = 319

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 26/150 (17%)

Query: 10  IVFDIETTGL---DSKNDRIIEIGAV-------ELLDYSKTNRTFQVFLCPNGRKN-SPE 58
           +  D+ETTGL   +    RI E+ AV       EL  + +     ++ LC N  K  SPE
Sbjct: 35  VFLDLETTGLPHLEHNKTRITELCAVSVRADHIELGCFPRVQN--KLSLCFNPMKMISPE 92

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEF---WDFFNEQNAEWIAHNA-KFDVGFINAELQRI- 113
           A  L G++++ L+ + SFSS   +    W   N++    +AHN  +FD   + AE+++  
Sbjct: 93  ATSLTGLSNDLLEYQASFSSDAVDVIRKWLEMNQKPICLVAHNGNRFDYPILRAEVEKTR 152

Query: 114 NKDP--------LDPSRIIDTLSIARRKHP 135
           NK P        L+  R IDTL     K P
Sbjct: 153 NKLPEDILCLDSLNAFRSIDTLEAEAVKQP 182


>gi|218289182|ref|ZP_03493418.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240765|gb|EED07944.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 952

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 22/176 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           M  I+ D ETTGL+ +   I+EIGA+     E++D      TF   + P  R    E  +
Sbjct: 1   MEWIIVDFETTGLEPERAEILEIGALRVRGGEIVD------TFHTLVRPE-RPIPDEITR 53

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G++D  +   PS       F  F  +       H+  F+  F+     R    PL P 
Sbjct: 54  LTGLSDTDVAGAPSEREALMRFATFAGD--TPMAGHHWAFERSFLRDRASRYGL-PLQPG 110

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKM 174
             + TL++AR   P    + L  L +R  +   ISHR    AL D+H    + +++
Sbjct: 111 DGLCTLNLARILAPRLMSHRLEYLARRLCLRAEISHR----ALADAHTAHQLLMRL 162


>gi|70732181|ref|YP_261937.1| ribonuclease T [Pseudomonas fluorescens Pf-5]
 gi|123653314|sp|Q4K746|RNT_PSEF5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|68346480|gb|AAY94086.1| ribonuclease T [Pseudomonas fluorescens Pf-5]
          Length = 223

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI A  + +D   +     T+   + P  G      AL+  G
Sbjct: 31  VVVDVETGGFNSATDALLEIAATTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 90

Query: 65  I-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114
           I  D  L+    ++ + + IF              A  + HN+ FD+GF+NA + R++  
Sbjct: 91  IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 150

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+   I    R  H A  D+   ++++  +
Sbjct: 151 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQSADIDFDGREAHSARYDTEKTAELFCGI 208

Query: 175 M 175
           +
Sbjct: 209 V 209


>gi|256377528|ref|YP_003101188.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
 gi|255921831|gb|ACU37342.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
          Length = 262

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 95/207 (45%), Gaps = 25/207 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +  D+ETT ++ + DRI+    V +    + +K +   + +L   G      A  +HGI+
Sbjct: 16  LALDLETTDVEPRRDRIVTASVVVITPGAEGAKPDVRVRTWLADPGVPIPASATAIHGIS 75

Query: 67  DEFLK--DKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            E  +   +P         ++ +E W      +    A NA FD+  ++AEL R +   L
Sbjct: 76  TEQARAEGRPVGEVVAEVEALLAELWT----ASTPLCAFNAPFDLTMLDAELLRHHGRSL 131

Query: 119 DPS-RIIDTLSIARRKHPS--SRNDLNSLCKRYGITI--SHRSKHGALLDSHL---LSDV 170
             S  ++D L + R   P    +  L ++C+ +G+ +  +H S   AL  + L   L+ V
Sbjct: 132 RVSGPVVDPLCVDRALDPRRVGKRTLGAVCEHHGVRLEGAHTSAGDALAAARLAWKLARV 191

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEK 197
           +  + VGG  ++      +  +F+E++
Sbjct: 192 H-PVEVGGIALSE-LHERQVGWFREQE 216


>gi|295133095|ref|YP_003583771.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
 gi|294981110|gb|ADF51575.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
          Length = 257

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 58/106 (54%), Gaps = 5/106 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG +   DRI+EI  +++  Y   N+  + +L     +   E + +HGI++E + 
Sbjct: 12  FDLETTGTNLAKDRIVEIAILKV--YPNGNKESRTWLVNPEMEIPKEVIAIHGISNEKVA 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           ++P+F  +  + +D    +  +   +N+ +FD+  +  EL R + D
Sbjct: 70  NEPTFKELSKQIYDMI--KGCDLGGYNSNRFDIPLLAEELLRADID 113


>gi|313679706|ref|YP_004057445.1| DNA-directed DNA polymerase [Oceanithermus profundus DSM 14977]
 gi|313152421|gb|ADR36272.1| DNA-directed DNA polymerase [Oceanithermus profundus DSM 14977]
          Length = 252

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 8/155 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL    + IIEI A+  ++  +  R F   + P G    P   +L GI+   
Sbjct: 79  VVLDLETTGLSPSENEIIEI-ALMRVEPGRVER-FARLVNP-GSPIPPFITRLTGISSAD 135

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P   +   E   +   + A  +  NA FD+GF+     R+     +   +IDT+  
Sbjct: 136 VADAPDVYTALEEALPYL--EGAVLVIQNAPFDLGFLRPRACRLGVKIHN--EVIDTVQW 191

Query: 130 A-RRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           A R      R  L+ L + + ++I   ++H AL D
Sbjct: 192 ARRALPRMRRRGLDHLIRAFEVSIETGARHRALGD 226


>gi|89890830|ref|ZP_01202339.1| DNA polymerase III [Flavobacteria bacterium BBFL7]
 gi|89516975|gb|EAS19633.1| DNA  polymerase III [Flavobacteria bacterium BBFL7]
          Length = 453

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 9/154 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTG     + I EI A+   D  +    F   + P  ++  P  +KL GI ++ L
Sbjct: 4   IVDVETTGGKFNEEGITEI-AIYKFDGHEIVDQFASLVNPE-KEIQPFVVKLTGINNKML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P F  +     +    Q    +AHNA FD   +  E +R+  +    ++ + T+ +A
Sbjct: 62  ARAPKFYEVAKRIIEIM--QGTVLVAHNANFDYRMLRIEFERLGYEF--HTQTLCTVELA 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGAL 161
           ++  P   +  L  L +  GI I+  HR+   AL
Sbjct: 118 QQLMPEEESYSLGKLTRSLGIPITDRHRATGDAL 151


>gi|241589662|ref|YP_002979687.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
           12D]
 gi|240868374|gb|ACS66033.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
           12D]
          Length = 330

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 6/109 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D ETTGL + + D ++E+  ++  D  K    F+  + PN     P A  +HGIT
Sbjct: 159 RTVYLDTETTGLSAASGDELLELAVID--DAGKV--LFETLIRPNHLTEWPAAQVIHGIT 214

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
              +   PS S++            A  +  NA FD+GF+   L+ + K
Sbjct: 215 PADVAGAPSLSAVLQGLAAAIEGAEAL-VIFNADFDLGFLPEPLRPLAK 262


>gi|33865550|ref|NP_897109.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8102]
 gi|33632719|emb|CAE07531.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH
           8102]
          Length = 256

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 20/170 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           ++ D ETTGLD + DR +E+GA+ L D S ++    Q FL P    N+ E   ++ I   
Sbjct: 28  LIIDTETTGLDPEKDRCLEVGAI-LFDVSTRSVLAQQSFLLPV-ETNAAE--PINRIPAS 83

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +    ++     F +     +   +AHNA FD        Q   +DPL         S
Sbjct: 84  VTRLPQPWTGALRWFDELLTASDVL-VAHNAVFD-------RQWFGRDPLPAVSHPWLCS 135

Query: 129 IARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +   + P+     SR  +  L   YG+ +   S H AL D + L++V+ +
Sbjct: 136 MEDLRWPAERQLRSRPSVRDLALAYGVPVW--SAHRALTDCNYLAEVFAR 183


>gi|238749568|ref|ZP_04611073.1| Exodeoxyribonuclease 10 [Yersinia rohdei ATCC 43380]
 gi|238712223|gb|EEQ04436.1| Exodeoxyribonuclease 10 [Yersinia rohdei ATCC 43380]
          Length = 219

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 27/170 (15%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GLD     I+EI +V+++D   +N      + P+ R  S +A+ +H IT+E +
Sbjct: 5   VIDTETCGLDGG---IVEIASVDVVDGVLSN-PMSDLVSPD-RPISLDAMVIHHITEEMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P  +    ++     + +  ++AHNA FD G +          P    + I TL +A
Sbjct: 60  EGMPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICTLKLA 104

Query: 131 RRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175
           R  +P  ++    L  RY + ++     +   H AL D ++ + +  ++M
Sbjct: 105 RMLYPDIKHSNQYL--RYALRLNVSIPENLYPHRALYDCYVTAALLQRIM 152


>gi|90962124|ref|YP_536040.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius UCC118]
 gi|227891147|ref|ZP_04008952.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius ATCC 11741]
 gi|90821318|gb|ABD99957.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius UCC118]
 gi|227867021|gb|EEJ74442.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius ATCC 11741]
          Length = 177

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 7/125 (5%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGIT++ +++ PSF  ++    +FF   N   +AHNA FD   +   L+  +   L 
Sbjct: 50  IQVHGITEKQVQNAPSFPELWPHIQNFFTPNNL-IVAHNASFDSSVLLRTLEHYDIT-LP 107

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMV 176
             +++DTL  +++      N  L+++C    I + H   H AL DS   +++  Y   + 
Sbjct: 108 HYQLLDTLRTSKKFFKDFENHKLDTICNNLNIDLKHH--HNALFDSTACAEILLYQANLF 165

Query: 177 GGSQI 181
           G  Q+
Sbjct: 166 GEDQL 170


>gi|239939981|ref|ZP_04691918.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
 gi|239986465|ref|ZP_04707129.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           11379]
 gi|291443411|ref|ZP_06582801.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
 gi|291346358|gb|EFE73262.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 241

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 13/154 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D + DRI+   A+   D +        +L   G    P A ++HG+ D+ L
Sbjct: 11  AFDTETTGVDVERDRIVS-AALVAQDTAGGRVRVTRWLVNPGIPVPPGATEIHGLADDHL 69

Query: 71  KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLD------P 120
           +    + + +  E      E  A     +  NA FD+  ++ EL+R     L       P
Sbjct: 70  QRNGRWPAPVMDEIARALAESCATGRPLVVMNAPFDLTLLDRELKRHRASSLARYLDGVP 129

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
            R++D   + +   ++   R  L  LC  Y + +
Sbjct: 130 MRVVDPRVLDKHLDRYRKGRRTLTDLCASYEVVL 163


>gi|325279748|ref|YP_004252290.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
 gi|324311557|gb|ADY32110.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
          Length = 260

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTG++   DRI+EI  +++  Y       +      G     EA  +HGI DE 
Sbjct: 10  VFFDLETTGINIAKDRIVEISVLKV--YPNGKEEQKTIRVNPGMHIPEEASAIHGIYDED 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127
           +KD P F  I  E   +   +  +   +N+ +FD+  +  E  R   D  +   + +D  
Sbjct: 68  VKDAPMFKHIARELAHYI--EGCDLGGYNSNRFDIPLLAEEFLRAEVDFDMSKRKFVDVQ 125

Query: 128 SI 129
           +I
Sbjct: 126 TI 127


>gi|237738098|ref|ZP_04568579.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419978|gb|EEO35025.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
          Length = 474

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 4/122 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+  +ETTGL+   D I++I A+ + + +  + TF+ F+ P   +   EA +++GIT E 
Sbjct: 8   IIVSLETTGLNHLVDEILKIEAIRIENGNIVD-TFKEFIKPK-FEIPKEASRINGITFED 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+ PS   +  +F + F ++    +A+NA+F   FI    +R  K+ +     ID LS+
Sbjct: 66  VKNSPSIEDVLDKFKN-FRKKGDILVAYNAEFVSKFIGFNFKRY-KNSIFSHEFIDLLSL 123

Query: 130 AR 131
            R
Sbjct: 124 VR 125


>gi|254457146|ref|ZP_05070574.1| exonuclease [Campylobacterales bacterium GD 1]
 gi|207085938|gb|EDZ63222.1| exonuclease [Campylobacterales bacterium GD 1]
          Length = 247

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 13/130 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++ D ETTG+  +NDR+I++G V L   +K       F   +    S  A+++HGIT 
Sbjct: 4   KYVILDTETTGV-GENDRVIQLGYVVL--GAKDVEVHNEFYSSD-VPISFGAMEVHGITP 59

Query: 68  EFLKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + L++KP+   S  +    +    +N   I HNA FD+G +  E +  N       ++ID
Sbjct: 60  DMLENKPACRDSVAYKRLCELNVSENY-MIIHNAPFDLGML--EKEGFNTQ----MKVID 112

Query: 126 TLSIARRKHP 135
           TL +A+   P
Sbjct: 113 TLRVAKHILP 122


>gi|191637943|ref|YP_001987109.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           casei BL23]
 gi|190712245|emb|CAQ66251.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           casei BL23]
 gi|327382013|gb|AEA53489.1| hypothetical protein LC2W_1155 [Lactobacillus casei LC2W]
 gi|327385171|gb|AEA56645.1| hypothetical protein LCBD_1147 [Lactobacillus casei BD-II]
          Length = 180

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 31  AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ 90
           A+ ++  +K   +F   + P  + ++ + + +HGIT E ++D+P+F  ++     F+   
Sbjct: 22  ALVVVQQNKVVDSFYTLINPQMQFDA-QNIHIHGITPEMVQDQPTFDRVWPHIQMFYTPG 80

Query: 91  NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYG 149
                AHNA FDV  +   L R         ++IDT+  +R+  P   N  L+++     
Sbjct: 81  RI-VTAHNAPFDVSVMRLTLDRYGIA-APRYQVIDTVKTSRQFLPKLPNHRLDTVSAALH 138

Query: 150 ITISHRSKHGALLDSHLLSDVYI 172
           I + H   H AL DS+  + + I
Sbjct: 139 IPLEHH--HNALADSYACARILI 159


>gi|295095557|emb|CBK84647.1| Exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 220

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET  L      I+E+ +V+++D  K        + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCDLQGG---IVEVASVDVID-GKIVNPMSHLVRPD-RPISAQAMAIHRITESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            DKP    I   +        ++W +AHNA FD   +          P  P   I T+ +
Sbjct: 59  ADKPWIEEIIPLY------HGSQWYVAHNASFDRRVL----------PEMPGEWICTMKL 102

Query: 130 ARRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           ARR  P  +    +L K   +++        H AL D ++ + + I +M
Sbjct: 103 ARRLWPGIKYSNMALYKSRKLSVRTPEGLHHHRALYDCYITAALLIDIM 151


>gi|300214810|gb|ADJ79226.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius CECT 5713]
          Length = 177

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 7/125 (5%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGIT++ +++ PSF  ++    +FF   N   +AHNA FD   +   L+  +   L 
Sbjct: 50  IQVHGITEKQVQNAPSFPELWPHIQNFFTPNNL-IVAHNASFDSSVLLRTLEHYDIT-LP 107

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMV 176
             +++DTL  +++      N  L+++C    I + H   H AL DS   +++  Y   + 
Sbjct: 108 HYQLLDTLRTSKKFFKDFENHKLDTICNNLNIDLKHH--HNALFDSTACAEILLYQANLF 165

Query: 177 GGSQI 181
           G  Q+
Sbjct: 166 GEDQL 170


>gi|162147891|ref|YP_001602352.1| exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542508|ref|YP_002274737.1| Exonuclease RNase T and DNA polymerase III [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786468|emb|CAP56050.1| putative exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209530185|gb|ACI50122.1| Exonuclease RNase T and DNA polymerase III [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 269

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 9/106 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN------SPEALKLHG 64
           V D+ET+G ++ +  I+EIG  ++      + T+ +   P  R        +P+ + +H 
Sbjct: 18  VIDLETSGRNAADGGIVEIGWQDV--ARDADGTWALAGPPGARLTHPGGPITPQTMAIHH 75

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           ITD  ++D P F+ I  +      ++ A   AH A F+ G+I   L
Sbjct: 76  ITDAHVRDAPPFAEIAPDIL-HPADRPAAMAAHRASFEQGWIRGSL 120


>gi|256828365|ref|YP_003157093.1| DNA polymerase III subunit epsilon [Desulfomicrobium baculatum DSM
           4028]
 gi|256577541|gb|ACU88677.1| DNA polymerase III, epsilon subunit [Desulfomicrobium baculatum DSM
           4028]
          Length = 244

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 15/175 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D E TGL ++ + I+ IGAV +   +     +F V + P+        L +H IT E 
Sbjct: 48  VLDTELTGLSARREEIVSIGAVRVRGLAIVPGESFSVLVRPSIPLPKTSTL-IHRITPEA 106

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P  + +  E  +F   +    + H+   D+ F+N   ++ +  PL  +  +DT+ +
Sbjct: 107 IAQAPPLAEVLPELIEFC--KGTLIVGHHVGLDMSFLNRACRKNHGQPLA-NPCLDTMRM 163

Query: 130 A---RRKHPSSRNDLNSLCKRYGIT-ISHR------SKHGALLDSHLLSDVYIKM 174
           A   R K   S  +  +L   Y +T ++H       + H AL D+   + ++I +
Sbjct: 164 AMLWREKRTPSHYEQFNLSISYVLTDLAHEFDLPRFTAHEALGDALQTAYLFIYL 218


>gi|307708507|ref|ZP_07644972.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus mitis NCTC 12261]
 gi|307615423|gb|EFN94631.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus mitis NCTC 12261]
          Length = 816

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D  K    +   + P+   ++    +L G+TD
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIED-GKIVDHYTTDVNPHEPLDA-HIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNPR--VDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPKLEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLQEKMAQLPKGL 176


>gi|108760097|ref|YP_630122.1| exonuclease [Myxococcus xanthus DK 1622]
 gi|108463977|gb|ABF89162.1| exonuclease [Myxococcus xanthus DK 1622]
          Length = 219

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 19/185 (10%)

Query: 7   MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNS-PEALKLH 63
           +R + F D+ETTGLD+    ++E+  + +   S K    ++  + P    ++ PEAL + 
Sbjct: 28  LRTLCFVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEARVKPTRLADAHPEALAVC 87

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDPS 121
           G +DE  +D      + +               HN  FD GF+    +R  +    +D  
Sbjct: 88  GYSDEEWRDALPLQEVLATVTPLLAGTLVA--GHNTSFDWGFLVESYRRSELALPSVDYH 145

Query: 122 RIIDTLSIARRKHPSSRND---LNSLCKRYGITISHR-SKHGALLDSHLLSDV----YIK 173
           R +DT S+A     +   +   LN+L KR+G+   HR + H A+ D+    +V     ++
Sbjct: 146 R-LDTASLAWPLLATGEVESLSLNALAKRFGL---HRPTPHRAMADARCALEVARCLAVR 201

Query: 174 MMVGG 178
           M  GG
Sbjct: 202 MARGG 206


>gi|302541136|ref|ZP_07293478.1| putative DNA polymerase III epsilon subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458754|gb|EFL21847.1| putative DNA polymerase III epsilon subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 241

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 13/155 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D ++DRI+    V            +  + P G      A ++HG+TD  L
Sbjct: 11  AFDTETTGIDVEHDRIVSAALVVQRGAGSLPEVRRWLVSP-GIPVPQAATEIHGLTDTHL 69

Query: 71  KDKPSF-SSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +    + + +  E      EQ A     +  NA FD+  ++ EL+R     L     + +
Sbjct: 70  QQHGRWPAPVMDEVARALAEQTARGTPVVVMNAPFDLTLLDRELKRHRNATLATYLSLRS 129

Query: 127 LSIARR--------KHPSSRNDLNSLCKRYGITIS 153
           LS+           ++   R  L  LC  YG+ ++
Sbjct: 130 LSVLDPRVLDKHLDRYRKGRRTLTDLCAHYGVELT 164


>gi|85059419|ref|YP_455121.1| ribonuclease T [Sodalis glossinidius str. 'morsitans']
 gi|84779939|dbj|BAE74716.1| ribonuclease T [Sodalis glossinidius str. 'morsitans']
          Length = 234

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 15/136 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++  D ++EI AV L +D   + + + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAVTDALLEIAAVTLKMDDDGWLQADSTLHFHVDPFPGALLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +   IF        +Q    A  +AHNA FD GF+ A + R  + 
Sbjct: 80  IDPHNPLRGAVGEYEALHEIFKMVRKGIKDQGCNRAIIVAHNAAFDHGFLMAAVSRAGLK 139

Query: 115 KDPLDPSRIIDTLSIA 130
           ++P  P    DT +++
Sbjct: 140 RNPFHPFATFDTAALS 155


>gi|268679463|ref|YP_003303894.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617494|gb|ACZ11859.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 203

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 11/171 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGL+ K D I+ IGAV++  +    +  F++F+ P    N   ++K+H I + 
Sbjct: 32  VVFDTETTGLNPKKDEILSIGAVKVRGNKILMSEKFELFVKPRFEVNE-TSIKIHQIRNI 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127
            +++  S      +F  F   +    + +  +FDV  IN  L+  +N    +P   +  L
Sbjct: 91  DVQNALSPREAIEQFLHFIGAR--PLVGYYLEFDVAMINKYLKAWLNIYLPNPQIELSGL 148

Query: 128 SIAR--RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +  ++ P    DL  + + K  G+ I    KH AL D+ + + +Y+K+
Sbjct: 149 YHDKKIKRIPDGVIDLRFDVMMKELGLPIF--GKHDALNDAMMSAMMYVKL 197


>gi|170720300|ref|YP_001747988.1| ribonuclease T [Pseudomonas putida W619]
 gi|169758303|gb|ACA71619.1| ribonuclease T [Pseudomonas putida W619]
          Length = 224

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV +    K       T+   + P  G      AL+  G
Sbjct: 32  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFYRVEPFEGANIEAAALEFTG 91

Query: 65  I-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  D  L+    ++ + + IF              A  + HN+ FD+GF+NA + R  + 
Sbjct: 92  IKLDHPLRMAVSEENALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVTRNDLK 151

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++A   +   +  L   C+   I    R  H A  D+   ++++  +
Sbjct: 152 RNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTAELFCGI 209

Query: 175 M 175
           +
Sbjct: 210 V 210


>gi|242373764|ref|ZP_04819338.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W1]
 gi|242348501|gb|EES40103.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W1]
          Length = 900

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 14/163 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           V D+ETTG     D II+IG    + + +  +    +  +     +  P    L  I +E
Sbjct: 8   VVDLETTGNQLDYDEIIQIG----ITFVRNQQIIDTYHSMIRTDLEIPPFIQALTSIEEE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L   P F+ +     D +N+ ++  ++AHN  FD+ FI       N     P +++DTL
Sbjct: 64  MLAQAPYFNEVAE---DIYNQIKDCIFVAHNISFDLNFIKNAFDNCNIQ-FRPKKVMDTL 119

Query: 128 SIARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHLL 167
            + +   P+ ++  L+ L + + I  T +HR+   A   + L+
Sbjct: 120 ELFKIAFPTDKSYQLSELAQSHNIPLTNAHRADEDATTTAKLM 162


>gi|242239125|ref|YP_002987306.1| ribonuclease T [Dickeya dadantii Ech703]
 gi|242131182|gb|ACS85484.1| ribonuclease T [Dickeya dadantii Ech703]
          Length = 225

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI AV L +D   + + + T    + P  G   +P+AL  +G
Sbjct: 22  VVIDVETAGFNAQTDALLEIAAVTLKMDDNGWLQPDETLHFHIEPFEGAILNPDALAFNG 81

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +   IF        ++       +AHNA FD  F+ A  +R  + 
Sbjct: 82  IDPTNPLRGAVSEYEALHEIFKMVRKGIKDKGCNRGIVVAHNAAFDHSFLMAAAERCGLK 141

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT S++       +  L   C    I       H AL D+   ++++ ++
Sbjct: 142 RNPFHPFVTFDTTSLSGLV--LGQTVLAKACITADILFDSSQAHSALYDTQRTAELFCEL 199

Query: 175 M 175
           +
Sbjct: 200 V 200


>gi|332521177|ref|ZP_08397635.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola
           5H-3-7-4]
 gi|332043270|gb|EGI79467.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola
           5H-3-7-4]
          Length = 257

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG++   DR++EI  +++  +   N+  + +L         E   +HGITDE + 
Sbjct: 12  FDLETTGINISKDRVVEISILKV--FPNGNKESKTWLVNPEMPIPAEVSAIHGITDERVA 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           ++P+F+ +  E      + +      N +FD+  +  E+ R N D
Sbjct: 70  NEPTFAELAKEINVMIKDSDLAGFNSN-RFDIPLLAEEMLRANMD 113


>gi|90420422|ref|ZP_01228329.1| polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90335150|gb|EAS48903.1| polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 260

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 29/178 (16%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ET G   ++D +IEIG++++ L         Q    P G   +P A ++H I+D  
Sbjct: 18  VIDVETAGHRLEDDAVIEIGSIDVDLATGVIGNPLQTLCDPAGVAINPHARRVHQISDAM 77

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P F+     F          + A  A FD   +               R + T  +
Sbjct: 78  LDGAPPFAEAVRPF-----ASAGLYAAQRASFDRSRLRLT-----------GRWLCTYKL 121

Query: 130 ARRKHPSSR-NDLNSLCKRYGITIS-----------HRSKHGALLDSHLLSDVYIKMM 175
           A R  P  R + L SL K   + +S           HR+ + A+  + LL  +   +M
Sbjct: 122 ALRAFPQVRAHGLQSLVKYVPLDLSEVRPMLEGLHPHRALYDAVCTAVLLRTIAATLM 179


>gi|306829204|ref|ZP_07462394.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           ATCC 6249]
 gi|304428290|gb|EFM31380.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           ATCC 6249]
          Length = 830

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 20/180 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKN 55
           M+     R +V D+E T   SK  +II++G V     E++D   T+      + P+   +
Sbjct: 1   MMNARNDRYVVVDLEATSTGSKA-KIIQVGIVVIENGEIVDQYATD------VNPHEPLD 53

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           S    +L G+TD+ L   P FS +  + ++    ++  ++AHN +FD   + AE      
Sbjct: 54  S-HIKELTGLTDQRLAAAPEFSQVAGKIFELV--KDGVFVAHNVQFDANLL-AEFLFFEG 109

Query: 116 DPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             L   R +DT+ +A+  +P   + +L  LC+  GI +     H AL D+   +++ + M
Sbjct: 110 YELRTPR-VDTVELAQVLYPQFEKYNLGILCQELGIELEQ--AHTALSDAQATAELLLYM 166


>gi|85713236|ref|ZP_01044262.1| RNase T, degrades tRNA [Idiomarina baltica OS145]
 gi|85692931|gb|EAQ30903.1| RNase T, degrades tRNA [Idiomarina baltica OS145]
          Length = 222

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D+ET G ++  D ++EI AV +L++      K   + Q  + P  G      A++ +
Sbjct: 31  VVIDVETAGFNASTDALLEIAAV-ILNFDEHGQLKPVESHQFHVEPFEGANIEQAAIEFN 89

Query: 64  GIT--DEFLKDKPSFSSIFSEFWDFFNEQNAE------WIAHNAKFDVGFI--NAELQRI 113
           GI    E     P    + + F      Q A        + HN+ FD  F+   AE   I
Sbjct: 90  GIDPHSELRGALPEDEVLKALFKPIRKAQKAAGCQRSVLVGHNSNFDHSFLMRAAERANI 149

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT S+A       +  L   CK  GI    +  H AL D+   ++++  
Sbjct: 150 KRNPFHPFVSFDTTSLAALT--LGQTVLIKACKAAGIEFDQKQAHSALYDTEKTAELFCW 207

Query: 174 MM 175
           M+
Sbjct: 208 MV 209


>gi|296110415|ref|YP_003620796.1| ATP-dependent helicase DinG [Leuconostoc kimchii IMSNU 11154]
 gi|295831946|gb|ADG39827.1| ATP-dependent helicase DinG [Leuconostoc kimchii IMSNU 11154]
          Length = 801

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 9/174 (5%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D+ETTG   +K  RII+IG +  +   K    F+ F+ P G+  +    +L  I+ +
Sbjct: 8   VVVDLETTGQSVAKGGRIIQIG-MTFIKQRKIVDHFESFVNP-GQLIARNIQQLTHISQK 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+ P F  I     +    ++A  IAHN  FD  ++N E  R     L+ S  IDT+ 
Sbjct: 66  EVKNAPYFEEIAPLLQNLL--KDAVIIAHNINFDYPYLNDEFVRTGFQKLN-SAAIDTVQ 122

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +A+   P++    L  L     IT++  + H A  D+H  + +++K+     Q+
Sbjct: 123 LAQILLPTAPGYRLLDLTTYLDITLN--NAHRANADAHATALLFLKLWQRAEQL 174


>gi|149372989|ref|ZP_01891945.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
 gi|149354349|gb|EDM42916.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
          Length = 472

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 84/179 (46%), Gaps = 20/179 (11%)

Query: 11  VFDIETTGLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65
           V D+ETTG   +       II +  +E++D   +    ++++        P+ +  L GI
Sbjct: 10  VIDVETTGGVGQGRMTEICIITVENMEIVDVWSSLINPEIYI--------PQHITALTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+ + D P F  + +   +    ++A ++AHN  FD GF+  E   I        + + 
Sbjct: 62  TDQMVTDAPRFCDVAAIIEE--KTRDAIFVAHNVNFDYGFLKKEFDLIGAS--FSRKKLC 117

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           T+ ++R+  P      L+ LC+  GI++     H A  D+   + ++++++   S  NF
Sbjct: 118 TVRLSRKLIPGLPSYSLSKLCRSIGISL--LDAHRAEADTRATTTLFLQLLEKDSVANF 174


>gi|295133359|ref|YP_003584035.1| exonuclease domain-containing protein [Zunongwangia profunda
           SM-A87]
 gi|294981374|gb|ADF51839.1| exonuclease domain-containing protein [Zunongwangia profunda
           SM-A87]
          Length = 475

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 9/155 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG   K ++I EI  V ++   +    +   + P G +       L  I D+ L
Sbjct: 8   IIDIETTGGGIKGNKITEI-CVLVVQNGEVINEYTSLVNP-GTEIPLYIETLTNINDKML 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P FS I S+  +    ++  ++AHN  FD   I AE + +N       R+  T+ +A
Sbjct: 66  VDAPKFSEIASKIQEI--TRDCIFVAHNVNFDYNIIKAEFESLNLS-FQRKRLC-TVRLA 121

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           ++  P   +  L +LC    I I H +KH A  D 
Sbjct: 122 KKLIPGLFSYSLGNLCT--SINIPHDNKHRAYGDC 154


>gi|88596045|ref|ZP_01099282.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190886|gb|EAQ94858.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315058737|gb|ADT73066.1| Exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni S3]
 gi|315927070|gb|EFV06421.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 326

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 15/163 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNSPEALKLHGIT 66
           +V D+ETTG D K + I+EI A+   +  K    ++  +V   P+         +  GI 
Sbjct: 35  VVIDLETTGFDPKCNEILEIVALRYENNEKIAEFSKLIKVSFLPSF------ITEFTGIN 88

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ +K+    S    EF DF    +   +AHNA FD+ F+          P      +DT
Sbjct: 89  EDMIKNCNDISQTLKEFDDFLKSGDI-LVAHNAHFDINFLYDNFMCYLNKPFSFD-FVDT 146

Query: 127 LSIARR-KHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHL 166
           + +++      + + L  LC +Y I    +HR +    L +HL
Sbjct: 147 MRLSKLINQELAHHRLKDLCNQYNICYENAHRGEKDCEL-THL 188


>gi|326692531|ref|ZP_08229536.1| Rad3-related DNA helicase [Leuconostoc argentinum KCTC 3773]
          Length = 801

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 21/180 (11%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRT---FQVFLCPNGRKNSPEALKLHGI 65
           +V D+ETTG   ++  RII+IG    + + K  R    F+ F+ P G+       +L  I
Sbjct: 8   VVVDLETTGQSVARGGRIIQIG----MTFIKNRRIVDHFESFVNP-GQPIDRNIQQLTHI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +++ ++D P F  I     +    Q+   IAHN  FD  ++N EL R    P+  +  ID
Sbjct: 63  SEKDVRDAPYFEEIVPVLRNML--QDTVLIAHNINFDYPYLNDELARTGF-PVLNNPAID 119

Query: 126 TLSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           T+ +A+   P++      DL +      + I+  + H A  D+   + +++K+     Q+
Sbjct: 120 TVQLAQILLPTAPGYRLLDLTTF-----LNITLNNAHRANADAQATALLFLKLWQKAEQL 174


>gi|318057465|ref|ZP_07976188.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318076919|ref|ZP_07984251.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
          Length = 244

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 13/163 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +  R   FD+ETTG+D + DRI+    V+      T     V+L   G +    A 
Sbjct: 1   MTAWHTGRLCGFDLETTGIDVEADRIVTACVVQCGGGQDTASA--VWLADPGVEIPEGAA 58

Query: 61  KLHGITDEFLKDK----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           K+HGIT E  + +    P                    +A NA +D+  ++ E +R    
Sbjct: 59  KVHGITTEQARAEGRPAPEVVEQVVAALAQVARDGVPVVAMNASYDLTLLDREARRHGVQ 118

Query: 117 PL-----DPSRIIDTLSIARRKHPSSRND--LNSLCKRYGITI 152
           PL     D  R+ID   + +R     R    L  LC+ Y + +
Sbjct: 119 PLVDIVGDQLRVIDPRVLDKRVDKFRRGGRKLEDLCRTYSVGL 161


>gi|296314226|ref|ZP_06864167.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           polysaccharea ATCC 43768]
 gi|296839130|gb|EFH23068.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           polysaccharea ATCC 43768]
          Length = 408

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GI+D  + D P F+ I  E +     +    IAHN++FD  F+  E  R       P+
Sbjct: 18  LTGISDGMVADAPIFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHRAGIGFSSPA 75

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             + ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 76  --LCSVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 120


>gi|71892146|ref|YP_277878.1| ribonuclease T [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|123640967|sp|Q492U0|RNT_BLOPB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|71796252|gb|AAZ41003.1| ribonuclease T [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 217

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 81/192 (42%), Gaps = 38/192 (19%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV----FLCPNGRKN---------- 55
           +V D+ET GLD+  + ++EI             TF++    +LC +G  N          
Sbjct: 20  VVVDVETAGLDANINALLEIAVA----------TFKMDEYGWLCVDGSLNFHIKSFPGAI 69

Query: 56  -SPEALKLHGI-----TDEFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFI 106
             PE+L  +GI         + ++ +   IF         Q    A  +AHNA FD  F+
Sbjct: 70  IQPESLAFNGIDLNSPLRAAVTEQEALHEIFEMVRQGIKTQGCSRAIIVAHNAFFDHSFL 129

Query: 107 NAELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            A ++R++   K+P  P  + DT +++       +  L   C   G+       H AL D
Sbjct: 130 MAAVERVSFMEKNPFHPFVMFDTATLSGLVF--GQTVLAKACACAGVFFDKNKAHSALYD 187

Query: 164 SHLLSDVYIKMM 175
           +   + ++ +++
Sbjct: 188 TERTAMLFCELV 199


>gi|91216470|ref|ZP_01253436.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC
           700755]
 gi|91185264|gb|EAS71641.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC
           700755]
          Length = 454

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 9/154 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIE+TG     + I EI A+   D ++    F   + P  RK     + L GI +E L
Sbjct: 4   ILDIESTGGKYNEEGITEI-AIYKFDGNEIVDQFISLINPE-RKIQSFVVGLTGINNEML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P F  I     +    +    +AHNAKFD   +  E  R+    L   + + T+ ++
Sbjct: 62  HQAPKFYEIAKRIIEI--TEGCTIVAHNAKFDYRMLKLEFDRLG--YLYERKTLCTVKLS 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGAL 161
           ++  P   +  L  L K+ GI I+  HR+   AL
Sbjct: 118 KKLLPDFESYSLGKLVKKLGIPITDRHRASGDAL 151


>gi|42519127|ref|NP_965057.1| hypothetical protein LJ1202 [Lactobacillus johnsonii NCC 533]
 gi|41583414|gb|AAS09023.1| hypothetical protein LJ_1202 [Lactobacillus johnsonii NCC 533]
          Length = 938

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 11/153 (7%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   ++ D II+ G   ++   K  +T+   + P+  +  P+A++ L  I++E
Sbjct: 12  VVDLETTGTQRNQGDHIIQFGCA-IIKKRKVVKTYSFLINPH--REIPQAVENLTHISNE 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     FS    +       +N  ++AHN  FD+ F+N EL     +PL   + +DT+ 
Sbjct: 69  DVAQAHDFSYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAVDTVE 125

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           +A+   P+     L  L  R  + I H + H A
Sbjct: 126 LAQIAFPTFPSYKLRDLTAR--LRIKHLNPHRA 156


>gi|218961823|ref|YP_001741598.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease
           (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730480|emb|CAO81392.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease
           (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 960

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 10/167 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHG 64
           ++  +  DIETTGL+S+ D II+I  +        N+ F   + P G+   P+ ++ L  
Sbjct: 21  QLEFVAIDIETTGLNSEWDEIIQIAGMRFKGEEVVNQ-FVSLVKPKGK--VPKFIEHLTH 77

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + LK  P    +  +F +F  +  +  + HN  FD  F+N  +      P+      
Sbjct: 78  ISPQELKTAPPIKEVLKDFCNFIGD--SILVGHNIGFDFNFLNQFIVDNGGFPISNMH-W 134

Query: 125 DTLSIARRKHP-SSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLS 168
           DT  I R   P ++ + L++L   +GI +  +H++   AL    L +
Sbjct: 135 DTAEIGRIYLPFTTDHKLSTLVSFFGIELMNAHQADADALATGKLFN 181


>gi|149926803|ref|ZP_01915062.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
 gi|149824355|gb|EDM83573.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
          Length = 308

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 19/110 (17%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN------SPEAL 60
           ++ +V D ETTGLD     +IE+GAV L++  +        L   G         +PE  
Sbjct: 44  VKVLVVDTETTGLDYATCEVIEVGAV-LIEVDQDTGAIGAVLGTFGGLEEPKVAITPENS 102

Query: 61  KLHGITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
            +HGIT+E +K    D+ +  ++ SE         A ++AHNA FD  F+
Sbjct: 103 AIHGITNEMVKGQRFDEAALKALCSE--------AALFVAHNAAFDKPFM 144


>gi|300716497|ref|YP_003741300.1| ribonuclease T [Erwinia billingiae Eb661]
 gi|299062333|emb|CAX59450.1| Ribonuclease T [Erwinia billingiae Eb661]
          Length = 215

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 15/136 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D+K + ++EI AV L +D   + + + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFDAKTNALLEIAAVTLKMDENGWLEKDETLHFHVEPFEGSILQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I         + +  +  +IF        +     A  +AHNA FD+ F NA   R  + 
Sbjct: 80  IDPSNPLRGAVSEYDALHAIFKLVRKGIKDHGCNRAIMVAHNATFDLNFTNAAADRAGLK 139

Query: 115 KDPLDPSRIIDTLSIA 130
           ++P  P    DT +++
Sbjct: 140 RNPFHPFVTFDTAALS 155


>gi|197124141|ref|YP_002136092.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K]
 gi|196173990|gb|ACG74963.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K]
          Length = 200

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 81/176 (46%), Gaps = 17/176 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF 69
            D+ET GLD++ D I+ +G + + + + +    ++  + P  G+  SP +++ H +    
Sbjct: 16  LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEQGKAVSPRSVQAHQLVAGD 75

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
            +  P+ + +  E       ++A  + H+A  ++GF+    +    + P  P  ++DT+ 
Sbjct: 76  TRGAPALAEVLPELERRL--RDAVLLVHHAPIELGFLKRAFRAAGLRWPGPP--VVDTVK 131

Query: 129 IA-------RRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +        RR+ P    D   LN    R  + +     H AL D+   +++++ +
Sbjct: 132 LLLRLDARERRRFPELPADPPVLNLSAARRRLGLPDYQAHDALTDAVATAELFLVL 187


>gi|329667338|gb|AEB93286.1| ATP dependent helicase [Lactobacillus johnsonii DPC 6026]
          Length = 938

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 11/153 (7%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   ++ D II+ G   ++   K  +T+   + P+  +  P+A++ L  I++E
Sbjct: 12  VVDLETTGTQRNQGDHIIQFGCA-IIKKRKVVKTYSFLINPH--REIPQAVENLTHISNE 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     FS    +       +N  ++AHN  FD+ F+N EL     +PL   + +DT+ 
Sbjct: 69  DVAQAHDFSYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAVDTVE 125

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           +A+   P+     L  L  R  + I H + H A
Sbjct: 126 LAQIAFPTFPSYKLRDLTAR--LRIKHLNPHRA 156


>gi|298208469|ref|YP_003716648.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Croceibacter atlanticus HTCC2559]
 gi|83848392|gb|EAP86261.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Croceibacter atlanticus HTCC2559]
          Length = 457

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 7/148 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG     + I EI   +   +   ++   + L    R   P  + L GI ++ L
Sbjct: 4   ILDIETTGGKYNEEGITEIAIYKFDGHEVVDQV--ISLVNPERPIQPFVVGLTGINNDML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ P F  I     +    Q+   +AHNAKFD   +  E +R+  +       + ++ ++
Sbjct: 62  RNAPKFYEIAKRILEI--TQDCILVAHNAKFDYRILRTEFRRLGYEY--ERETLCSVELS 117

Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSK 157
           ++  P  +   L  L K  GI IS R +
Sbjct: 118 KKLLPGHASYSLGKLTKALGIPISSRHR 145


>gi|145218937|ref|YP_001129646.1| exonuclease, RNase T and DNA polymerase III [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205101|gb|ABP36144.1| Exonuclease, RNase T and DNA polymerase III [Chlorobium
           phaeovibrioides DSM 265]
          Length = 194

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 82/177 (46%), Gaps = 25/177 (14%)

Query: 7   MRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHG 64
           M+K++ FD+ETTG+D + + II+   +  +D      +F++ + P+ G +   EAL++ G
Sbjct: 1   MKKVLWFDLETTGIDPERNGIIQFAGLAEID-GAVVESFEIKMQPHEGAQIDDEALEVTG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--------IAHNAKFDVGFINAELQRI--- 113
            T E +      +  + +  DF     + +          +N  FD+ F++   +R    
Sbjct: 60  FTREAIPTFTPHAEAYRQIDDFLARHVSRFDRNDKFYPAGYNVHFDLEFLSRMFKRFDQY 119

Query: 114 ------NKDPLDPSRIIDTLS-IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 N   LDP  I++ +  + R   P+ R  L + C  +G+ +   + H AL D
Sbjct: 120 GLGSFTNWRMLDPQPILNLMDYMGRISLPNHR--LQTACDHFGVKLE--NAHDALAD 172


>gi|239994204|ref|ZP_04714728.1| ribonuclease T [Alteromonas macleodii ATCC 27126]
          Length = 151

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 90  QNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR 147
           Q +  +AHNA FD  F+NA ++R N  + P  P    DT S+A       +  L   C+ 
Sbjct: 51  QRSVIVAHNATFDQSFVNAAIERCNIKRTPFHPFVSFDTTSLAGLAL--GQTVLVKACRA 108

Query: 148 YGITISHRSKHGALLDSHLLSDVYIKMM 175
            GI       H AL D+   ++++  M+
Sbjct: 109 AGIAFDQSEAHSALYDAQKTTELFCYMV 136


>gi|238791781|ref|ZP_04635418.1| Exodeoxyribonuclease 10 [Yersinia intermedia ATCC 29909]
 gi|238728885|gb|EEQ20402.1| Exodeoxyribonuclease 10 [Yersinia intermedia ATCC 29909]
          Length = 219

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 27/170 (15%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+E+ +++L+D +  N      + P+ R  S +A+ +H IT+E +
Sbjct: 5   IIDTETCGLAGG---IVEVASIDLVDGALAN-PMSDLISPD-RPISIDAMVIHHITEEMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP  +     +     + +  ++AHNA FD G +          P    + I TL +A
Sbjct: 60  EGKPRIAVAIRRY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICTLKLA 104

Query: 131 RRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175
           R  +P  ++    L  RY + ++     +   H AL D ++ + +  ++M
Sbjct: 105 RMLYPDIKHSNQYL--RYALRLNVSVPDNLYPHRALYDCYVTAALLQRIM 152


>gi|315224228|ref|ZP_07866068.1| exonuclease [Capnocytophaga ochracea F0287]
 gi|314945961|gb|EFS97970.1| exonuclease [Capnocytophaga ochracea F0287]
          Length = 258

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 5/106 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D   DRI+EI  +++  Y   N+  + +L          A  +HGITDE + 
Sbjct: 12  FDLETTGIDITKDRIVEISILKV--YPNGNKESKTWLVNPTIPIPKAASDVHGITDERVA 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
            +P+F  +  +  +    ++++   +N+ +FD+  +  E+ R   D
Sbjct: 70  GEPTFKELAKQIHNMI--KDSDLAGYNSDRFDIPLLAEEMLRAEVD 113


>gi|126010887|ref|YP_001039857.1| putative exonuclease [Vibrio phage VP882]
 gi|123203897|gb|ABM73410.1| putative exonuclease [Vibrio phage VP882]
          Length = 206

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 22/175 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           ++ D ETTGLDSK + IIEI  ++       N      + P      PE A ++HGIT+E
Sbjct: 16  LILDTETTGLDSKAE-IIEISIID----CAGNVLLDTLVKPTA--PIPEDATRIHGITNE 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P++  ++  F      +  E + +NA +D+  I    +R   D L+     D   
Sbjct: 69  MVANAPTWPEVYDLFVPLV--EGRELVIYNADYDLRMIRQADER--NDLLNIRTQADCAM 124

Query: 129 IARRKHPSSRND---------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +A  +     +D         L +  K+ G+ I  ++ H AL D  +   V   M
Sbjct: 125 LAYAEFYGQWDDYRGQWKWQRLGNAAKQQGVVIEGKA-HRALADCQMTLGVIASM 178


>gi|253583228|ref|ZP_04860426.1| exonuclease RNase T and DNA polymerase III [Fusobacterium varium
           ATCC 27725]
 gi|251833800|gb|EES62363.1| exonuclease RNase T and DNA polymerase III [Fusobacterium varium
           ATCC 27725]
          Length = 188

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 21/187 (11%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ET G+  K+  I   G V++         F V   P G + + EALK+ G T
Sbjct: 1   MKILFIDTETGGITEKSALIQLSGIVQIGKEVAEEFNFYVKPFP-GSEVTDEALKIQGRT 59

Query: 67  DEFLKDKPSFSSIFSEFW-------DFFNEQNAEWIA-HNAKFDVGFINAELQR------ 112
            E ++   S   +F +F        D +N+++   +  +N +FD+  IN  L+R      
Sbjct: 60  REEIEKYDSEEVVFRKFMKILNKHIDKYNKEDKFLVGGYNVRFDIDVINKFLRRNGEKYL 119

Query: 113 ---INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              I    LDP + I  L + ++      N L + C  +GI +     H +L D      
Sbjct: 120 FSYIQATTLDPLQWIAALQLLKKIPVLKDNKLETWCNHFGIEL---KAHDSLEDIKATKA 176

Query: 170 VYIKMMV 176
           +  KMM+
Sbjct: 177 LTKKMML 183


>gi|229113222|ref|ZP_04242717.1| exonuclease [Bacillus cereus Rock1-15]
 gi|228670248|gb|EEL25596.1| exonuclease [Bacillus cereus Rock1-15]
          Length = 288

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 10/103 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ-VFLCPNGRKNSPEALKLH 63
           NK + ++ D ETTGL  + D+IIEI  ++L      N   +   + P       EA  +H
Sbjct: 127 NKDQFVILDTETTGLTLR-DQIIEISVIDLAGKILLNSLVKPTIIIP------AEATSIH 179

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           GIT+E +    S+++I+ E  +    +    + +NA+FD+G I
Sbjct: 180 GITNEMIHGAQSWTTIYQELLEVTVGKTI--LIYNAEFDLGMI 220


>gi|225021962|ref|ZP_03711154.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945248|gb|EEG26457.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 456

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 83/171 (48%), Gaps = 13/171 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEA-LKLHGIT 66
           +  D+ET   D  +  I +IG V + D  + +     +LC  P G  +  E  +++HGIT
Sbjct: 114 VGVDVETANADWGS--ICQIGVVRVTDGMQVDS--HEWLCQPPAGIDHFDEGNIRIHGIT 169

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P F+++F E   +  +Q    +AHNA+FD+   +         P+   +   +
Sbjct: 170 PDMVTDAPDFATVFPEVVAYVADQ--VLVAHNAQFDLTAFSRACHATGT-PVPHWKFACS 226

Query: 127 LSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           L+ +R  K   + + L  + +  G+ + +   H A+ D+   + +++++ +
Sbjct: 227 LAASRAAKLGITSHRLPVVAQHLGVELDNH--HDAVADARACAGIFVQLAL 275


>gi|224373300|ref|YP_002607672.1| DNA polymerase III PolC-type [Nautilia profundicola AmH]
 gi|223589694|gb|ACM93430.1| DNA polymerase III PolC-type [Nautilia profundicola AmH]
          Length = 255

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 83/166 (50%), Gaps = 10/166 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           V DIE         ++IEIGAV++ +  K   TF+  +     K+ P+ + ++ GI  E 
Sbjct: 68  VVDIEVNNSKPNIGQVIEIGAVKIKNL-KIVDTFEFLIYA---KDVPKYVERVTGINQEM 123

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LK++ S   I  +F  F  E  + ++AH A FD  F+  + ++ N   +  +R + TL++
Sbjct: 124 LKNEASQKEILRKFRLFLGE--SVFVAHAADFDYNFLAHQFEKENLGEI-LNRFLCTLTL 180

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +++   + R  L  L +   + +   + H AL D+   + +++  +
Sbjct: 181 SQKTLEAERYGLKYLMEE--LKLPEETHHRALGDAKTTARIFLMCL 224


>gi|256818856|ref|YP_003140135.1| Exonuclease RNase T and DNA polymerase III [Capnocytophaga ochracea
           DSM 7271]
 gi|256580439|gb|ACU91574.1| Exonuclease RNase T and DNA polymerase III [Capnocytophaga ochracea
           DSM 7271]
          Length = 258

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 5/106 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D   DRI+EI  +++  Y   N+  + +L          A  +HGITDE + 
Sbjct: 12  FDLETTGIDITKDRIVEISILKV--YPNGNKESKTWLVNPTIPIPKAASDVHGITDERVA 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
            +P+F  +  +  +    ++++   +N+ +FD+  +  E+ R   D
Sbjct: 70  GEPTFKELAKQIHNMI--KDSDLAGYNSDRFDIPLLAEEMLRAEVD 113


>gi|269103713|ref|ZP_06156410.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163611|gb|EEZ42107.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 237

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 23/195 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +++  +V D ETTG D + D I+ +G V +    +D S      ++ +  + +K  PE  
Sbjct: 48  SQLEYLVLDFETTGFDPEQDDILSVGFVTISQQRIDLSTAT---ELLIKDSQQKVKPETA 104

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLD 119
            ++ IT E L          +     FN    +  +AH A  +  F+N  L    + P  
Sbjct: 105 IINHITTEKLAHGVELDCAMAA---LFNAMKGKIMVAHGAMIEQRFLNHYLATRYQLPPL 161

Query: 120 PSRIIDT------LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           P   +DT      LSI R++  ++   L  + +R+G  +     HGA++D+   +++ + 
Sbjct: 162 PIIWLDTLTIEKSLSIHRQQLKANDYRLAQIRQRHG--LPAYPAHGAVIDAIATAELLLV 219

Query: 174 MMVGGSQINFGFKTN 188
           + V      FG KT 
Sbjct: 220 LQVAC----FGKKTG 230


>gi|67459827|ref|YP_247450.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2]
 gi|67005360|gb|AAY62285.1| DNA polymerase III, epsilon subunit-like protein [Rickettsia felis
           URRWXCal2]
          Length = 377

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 15/165 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-----KLHG 64
           I  D ETTGL  + D+I+E+G V+  +Y++  R +Q+    N  ++  + +     +L G
Sbjct: 126 IFLDTETTGLSHEKDKILELGMVK-FEYTEDGRIYQIVDELNQYQDPQQPIPLRITELTG 184

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITDE ++ K    +I  E    F E     IAHNA FD  F +     +       SR  
Sbjct: 185 ITDEMVQGK----AIDQEAVTQFLENVDIIIAHNASFDRPFFDKMFLHLPPKAWGCSRA- 239

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDSHLLS 168
               I  +      + L  L  +Y      HR+    L   HLL+
Sbjct: 240 ---DIDWKAEKIESHKLEYLAYKYNFFYEGHRAVTDCLAGLHLLA 281


>gi|314933639|ref|ZP_07841004.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus caprae C87]
 gi|313653789|gb|EFS17546.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus caprae C87]
          Length = 900

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 18/165 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG     D II+IG +  +   K   T+   +     +  P    L  I ++ L
Sbjct: 8   VVDLETTGNQLDYDEIIQIG-ITFVSNHKIIDTYHS-MIRTDLEIPPFIQALTSIEEDML 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-----NAELQRINKDPLDPSRIID 125
              P F+ +  + +D    ++  ++AHN  FD+ FI     N ++Q        P +++D
Sbjct: 66  AQAPYFNEVAEDIYD--QIKDCIFVAHNISFDLNFIKNAFNNCDIQ------FKPKKVMD 117

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           TL + +   P+ ++  L+ L + + I +  +HR+   A   + L+
Sbjct: 118 TLELFKIAFPTDKSYQLSELAQAHDIPLDKAHRADEDATTTAKLM 162


>gi|300173471|ref|YP_003772637.1| ATP-dependent helicase DinG [Leuconostoc gasicomitatum LMG 18811]
 gi|299887850|emb|CBL91818.1| ATP-dependent helicase DinG [Leuconostoc gasicomitatum LMG 18811]
          Length = 801

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 9/174 (5%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D+ETTG   +K  RII+IG +  +   +    F+ F+ P G+       +L  I  +
Sbjct: 8   VVVDLETTGQSVTKGGRIIQIG-MTFIKQRQIVDHFESFVNP-GQLIDRNIQQLTHIAQK 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+ P F  +     +  N  N   IAHN  FD  ++N E +R     L  S  IDT+ 
Sbjct: 66  DVKNAPYFEELAPMLQNLLN--NTIIIAHNVNFDYPYLNDEFRRTGFPELT-SSAIDTVQ 122

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +A+   P++    L  L     IT++  + H A  D+H  + +++K+     Q+
Sbjct: 123 LAQILLPTAPGYRLVDLTTYLDITLN--NAHRANADAHATARLFLKLWQRAEQL 174


>gi|307721509|ref|YP_003892649.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979602|gb|ADN09637.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
          Length = 233

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 78/175 (44%), Gaps = 30/175 (17%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  DIETTGL++ +     +  + LL   K        L   G+K  P A  +H IT+E 
Sbjct: 3   IFTDIETTGLEADD----VMCGIALLSEDKVMYE----LLNEGKKIPPLASSIHHITNEM 54

Query: 70  LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++DK  F  I SE  DF  + N      IAHN KFD+  + A       D      IIDT
Sbjct: 55  IQDKKLF--IQSEVHDFLEQNNNPKNTLIAHNIKFDLEKLAAAGLHWQGD------IIDT 106

Query: 127 LSIARRKHPSSRNDLNSL-CKRYGITISH-----RSKHG---ALLDSHLLSDVYI 172
           L +   KH     +L SL   RY + +       + K+G   AL     LSDV +
Sbjct: 107 LKVT--KHLIKECELFSLEFLRYELKLYMQENEIKQKYGIKDALCTDKALSDVLV 159


>gi|305681196|ref|ZP_07404003.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Corynebacterium matruchotii ATCC 14266]
 gi|305659401|gb|EFM48901.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Corynebacterium matruchotii ATCC 14266]
          Length = 444

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 83/171 (48%), Gaps = 13/171 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEA-LKLHGIT 66
           +  D+ET   D  +  I +IG V + D  + +     +LC  P G  +  E  +++HGIT
Sbjct: 102 VGVDVETANADWGS--ICQIGVVRVTDGMQVDS--HEWLCRPPAGIDHFDEGNIRIHGIT 157

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P F+++F E   +  +Q    +AHNA+FD+   +         P+   +   +
Sbjct: 158 PDMVTDAPDFAAVFPEVVAYVADQ--VLVAHNAQFDLTAFSRACHATGT-PVPHWKFACS 214

Query: 127 LSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           L+ +R  K   + + L  + +  G+ + +   H A+ D+   + +++++ +
Sbjct: 215 LAASRAAKLGITSHRLPVVAQHLGVELDNH--HDAVADARACAGIFVQLAL 263


>gi|330860723|emb|CBX71015.1| exodeoxyribonuclease 10 [Yersinia enterocolitica W22703]
          Length = 220

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 27/170 (15%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL+     I+EI +++++D + +N      + P+ R  S +A+ +H IT+E +
Sbjct: 5   VIDTETCGLEGG---IVEIASIDVMDGALSN-PMSDLVSPD-RPISLDAMVIHHITEEMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP  +    ++     + +  ++AHNA FD G +          P    + I  L +A
Sbjct: 60  EGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICMLKLA 104

Query: 131 RRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175
           R  +P  ++    L  RY + ++     +   H AL D ++ + +  ++M
Sbjct: 105 RMLYPDIKHSNQYL--RYALRLNVSVPDNLYPHRALYDCYVTAALLQRIM 152


>gi|325271798|ref|ZP_08138267.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
 gi|324103069|gb|EGC00447.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
          Length = 201

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 7/111 (6%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           R  V D ETTG+      R  E+ AV +L+  +    +Q  +  N     P     L GI
Sbjct: 3   RIAVIDFETTGISPGAGCRATEV-AVVMLEGGRIVERYQSLM--NAGVPVPAFVAGLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           T   L+  P    + +E  +F  E     +AHNA FD  F + EL RI + 
Sbjct: 60  TTAMLRSAPPVDKVMNEVAEFVGET--PLLAHNAAFDQKFWDYELARIGRS 108


>gi|254818513|ref|ZP_05223514.1| DNA polymerase III subunit epsilon [Mycobacterium intracellulare
           ATCC 13950]
          Length = 330

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      RII +  + L    +  ++    L P      P    +HG+T   L
Sbjct: 19  VIDVETSGFRPGQARIISLAVLGLDADGEVEQSVVSLLNPG---VDPGPTHVHGLTAAML 75

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129
           +D+P F+ I  +  D    +    +AHN  FD  F+ AE +  + + P+D   ++ T+ +
Sbjct: 76  EDQPQFADIAPDVIDVLRGRT--LVAHNVAFDYAFLAAEAELADIELPVD--SVMCTVEL 131

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR      N  L +L   + +T      H A  D+ +L+ V    +
Sbjct: 132 ARRLDLGVDNLRLETLAAHWSVT--QERPHDAFDDAMVLTGVLASAL 176


>gi|258511618|ref|YP_003185052.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478344|gb|ACV58663.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 952

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 18/169 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           M  I+ D+ETTGLD +   I+EIGA+     E++D      TF   + P  R    E  +
Sbjct: 1   MEWIIVDLETTGLDPERAEILEIGALRVRGGEIVD------TFHTLVRPE-RPIPDEITR 53

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G++D  +   PS       F  F    +     H+  F+  F+   + R    PL P 
Sbjct: 54  LTGLSDADVAGAPSEREALMRFAGF--AGHTPMAGHHWVFERSFLLHRVARYGL-PLQPG 110

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGI--TISHRSKHGALLDSHLL 167
             + TLS+AR   P    + L  L +R  +   +SHR+   A     LL
Sbjct: 111 DGLCTLSLARILAPRLMSHRLEYLARRLRLRAEVSHRALADARTAHQLL 159


>gi|269216510|ref|ZP_06160364.1| putative ATP-dependent helicase DinG [Slackia exigua ATCC 700122]
 gi|269130039|gb|EEZ61121.1| putative ATP-dependent helicase DinG [Slackia exigua ATCC 700122]
          Length = 1045

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 9/149 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG    +D + +I A  +    +    F  F+ P G+    E  +L  I DE 
Sbjct: 58  VVLDTETTGFSQNHDELTQIAAARM-KQGRIVEWFVTFVNP-GKPIPEEVARLTDIHDED 115

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D PS      +   F  +     +AHNA FD GF     +     PL  +  ID+L +
Sbjct: 116 VADAPSPDDARIQLAAFVGDSCI--VAHNAAFDKGFCT---KSQGGAPLSDNLWIDSLDL 170

Query: 130 ARRKHPSSRND-LNSLCKRYGITIS-HRS 156
           AR   P  ++  L  + K +   +S HR+
Sbjct: 171 ARIALPRLKSHRLIDIVKAFDAPVSTHRA 199


>gi|119504386|ref|ZP_01626466.1| ribonuclease T [marine gamma proteobacterium HTCC2080]
 gi|119459894|gb|EAW40989.1| ribonuclease T [marine gamma proteobacterium HTCC2080]
          Length = 216

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 28/194 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--------ELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++ D+ET G ++  D ++E+ A         E++     +   + F    G      AL+
Sbjct: 19  VIVDVETGGFNAATDALLEVAATLIHVDDRGEVVLGDTISFNVEPF---EGANIEASALE 75

Query: 62  LHGITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR- 112
             GI  E      L +  +   +F+       +     A  + HNA FD GFIN+   R 
Sbjct: 76  FTGIDPENPLRAALPEAIALGDLFTRIRKEVRDTGCNRAILVGHNAHFDAGFINSASLRC 135

Query: 113 -INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            I ++P  P    DT ++A          L   C+R GI  ++   H A  D+   ++++
Sbjct: 136 DIKRNPFHPFSHFDTATLAGLAF--GHTVLAQACRRAGIEFNNSEAHSAAYDATKTAELF 193

Query: 172 IKMM-----VGGSQ 180
             ++     +GG Q
Sbjct: 194 CCIVNQWQRLGGWQ 207


>gi|163787973|ref|ZP_02182419.1| DNA Pol III Epsilon Chain [Flavobacteriales bacterium ALC-1]
 gi|159876293|gb|EDP70351.1| DNA Pol III Epsilon Chain [Flavobacteriales bacterium ALC-1]
          Length = 258

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 27/117 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS------------PEA 59
           FD+ETTG++   DRI+EI  ++              + PNG++N+             E 
Sbjct: 12  FDLETTGINISKDRIVEISILK--------------VHPNGKENTKTWVVNPEMPIPAEV 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
             +HGI+D  + DKP+F  +  E ++   + +      N +FD+  +  E+ R + D
Sbjct: 58  TAIHGISDADVADKPTFKELSKEIYNLIKDSDLGGFNSN-RFDIPLLAEEMLRADID 113


>gi|227548071|ref|ZP_03978120.1| DNA polymerase III, epsilon subunit [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079869|gb|EEI17832.1| DNA polymerase III, epsilon subunit [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 188

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 86/176 (48%), Gaps = 18/176 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTGL  + D+++ IG V + D          F+       +  +  LHG+TD+ 
Sbjct: 17  LAVDVETTGLKPERDQLVSIGWVPVNDRVIDLSGAAHFVVAGASVGN--SATLHGVTDD- 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNA--EWIAHNAKFDVGFINAELQRI--NKDPLDPSRIID 125
             D  +  +  +E  + F    A  + +AH A+ ++GFI    +++   +  L    ++D
Sbjct: 74  --DVLASGTDIAEIVEHFERAIAGRKLLAHFAQMELGFIGHAFKQVRGTRWRLREDEVVD 131

Query: 126 TLSIARR------KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           T ++ RR       +P   +  L  + +RYG+  ++R+ H AL D+   +++Y+ +
Sbjct: 132 TFALERRHMERMATYPRGEDLRLARVRQRYGLP-AYRN-HNALTDAVACAELYLAL 185


>gi|325676987|ref|ZP_08156658.1| DNA polymerase III subunit epsilon [Rhodococcus equi ATCC 33707]
 gi|325552149|gb|EGD21840.1| DNA polymerase III subunit epsilon [Rhodococcus equi ATCC 33707]
          Length = 228

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ETTG D  + RI+    V +      +R    ++   G +   +A  +HGI+    
Sbjct: 11  AFDLETTGRDPLSARIVTGSVVTVGGEGHRSRN---WIVDPGVEIPVDAAAVHGISTAQA 67

Query: 71  KDKPS-FSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           +++   ++S + E      +  A     +A NA +D+  ++AE +R+   PL     ++D
Sbjct: 68  RERGQDYASGYREIRSALTDAWAAGHVVVAFNAAYDLTVLDAEGRRLGWPPLSGYGLVVD 127

Query: 126 TLSIARRKHPSSRN--DLNSLCKRYGITI--SHRSKHGALLDSHL 166
              I R      R    L +LC+ YG+ +  +H ++  AL  + L
Sbjct: 128 PYVIDREMDRDRRGKRTLGALCEHYGVVLAAAHEAESDALAAAEL 172


>gi|325285402|ref|YP_004261192.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga lytica DSM
           7489]
 gi|324320856|gb|ADY28321.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga lytica DSM
           7489]
          Length = 258

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 58/106 (54%), Gaps = 5/106 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG++   DR++EI  +++  Y   N+  + +L         E + +HGI++E + 
Sbjct: 12  FDLETTGINVAKDRVVEISILKV--YPNGNKESKTWLVNPEMHIPDEVVAVHGISNEKVA 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           ++P+F+ +  E +     ++ +   +N+ +FD+  +  E+ R   D
Sbjct: 70  NEPTFAQLSKEIYAMI--KDCDLGGYNSDRFDIPLLAEEMLRAGVD 113


>gi|282864742|ref|ZP_06273796.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE]
 gi|282560167|gb|EFB65715.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE]
          Length = 243

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 25/166 (15%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++ R   FD+ETTG D    RI+    V +          + +L   G +   +A  +HG
Sbjct: 4   HRERLAGFDLETTGTDPLEARIVTAAVVAVESSGGEAAGCRTWLADPGVRIPEQASAIHG 63

Query: 65  ITDE--FLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL------ 110
           I+ E    + +P        + I  E W          +A+NA FD+  ++AEL      
Sbjct: 64  ISSERAAAEGRPVREVADEIAGILVEHW----RAGVPVVAYNAAFDLTLLSAELRRHGLP 119

Query: 111 ---QRINKDPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGIT 151
              +R+    + P  +ID  +I R   ++   +  L ++C  Y + 
Sbjct: 120 SLSERLGGAGIGP--VIDPYTIDRAVDRYRKGKRTLEAVCVEYDVV 163


>gi|126011010|ref|YP_001039760.1| gram-positive type DNA polymerase III alpha subunit [Burkholderia
           ambifaria phage BcepF1]
 gi|119712586|gb|ABL96807.1| gram-positive type DNA polymerase III alpha subunit [Burkholderia
           ambifaria phage BcepF1]
          Length = 197

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 74/183 (40%), Gaps = 26/183 (14%)

Query: 11  VFDIETTGLDS-------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           VFD ETTGL S       +  RIIE   + + D      T + F C  G        K+ 
Sbjct: 5   VFDTETTGLPSHPLAPLDRQPRIIEFAGI-VTDGRDILHTLE-FRCNPGVALEEIITKIT 62

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEW----------IAHNAKFDVGFINAELQRI 113
           G+TD  L+D+P  S  F E   FF ++              +AHN  FD   ++ +L+R 
Sbjct: 63  GLTDADLRDQPDISHFFGELKSFFGKEPMPHVFGEKPKFARVAHNLSFDRNLLDYDLKRR 122

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            K  LD     D L I   +  + +      L  L  R     +   KH AL D   L D
Sbjct: 123 GKT-LDDIGFNDALMICTVEQTTPQFGRPMKLQELWSRARGEFTQ--KHRALDDVMRLHD 179

Query: 170 VYI 172
           V I
Sbjct: 180 VCI 182


>gi|319760755|ref|YP_004124692.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC]
 gi|317115316|gb|ADU97804.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC]
          Length = 209

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 8/148 (5%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+  ++  R  E+ A+ L++  +    F   +   G    P   +L GIT+  
Sbjct: 7   VIDFETTGMTPAQGARATEV-AIVLMEGERVVDRFASLM-KTGVWIPPFITRLTGITNAM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P+   +  E   F    +A  +AHNA FD  F  +EL+    D   P     T+ +
Sbjct: 65  VDAAPAAEPVMREAARFVG--DAPMVAHNAAFDSRFWQSELRHAGLD--APHPFACTVLL 120

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRS 156
           +RR +P +  + L  L    G+  + R+
Sbjct: 121 SRRIYPDAPSHSLGRLTDHLGLPRTGRA 148


>gi|152992740|ref|YP_001358461.1| DNA polymerase III subunit epsilon [Sulfurovum sp. NBC37-1]
 gi|151424601|dbj|BAF72104.1| DNA polymerase III, epsilon subunit [Sulfurovum sp. NBC37-1]
          Length = 206

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 9/170 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGLD K D I+ IGAV++ +    T+    +++    ++ S E++ +H I   
Sbjct: 32  VVFDCETTGLDPKKDGIVSIGAVKIKENRILTDEAMHIYV-KQEKQISHESITIHQIRHC 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D         EF  F   +      +  +FDV  IN  ++ +    L P++  +  +
Sbjct: 91  DLEDAVPIEEAIEEFLYFIGGRT--LAGYYLEFDVAMINKYIKPMYGITL-PNKQEEVSA 147

Query: 129 IARRKH----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           I   K     P    DL        +++     H AL D+ + + +Y+K+
Sbjct: 148 IYYDKKISTIPQGNIDLRFETIIEDLSLPKLQAHDALNDAVMTAMIYLKL 197


>gi|149372305|ref|ZP_01891493.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
 gi|149354695|gb|EDM43258.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
          Length = 460

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 9/157 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   + DIETTG     + I EI A+   D  K    F   + P  R   P  + L GI 
Sbjct: 1   MNYAILDIETTGGKYNEEGITEI-AIYRFDGEKVVDQFCSLVNPE-RPIQPFVVNLTGIN 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + LK+ P F  +     +    ++   +AHNA+FD   +  E  R+  D  D   +  T
Sbjct: 59  SDMLKNAPKFYEVAKRIVEI--TKDCILVAHNAQFDNRILTTEFDRLGYD-FDLETLC-T 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGA 160
           + ++++  P   +  L  L +  GI I+  HR++  A
Sbjct: 115 VELSKKLIPDMPSYSLGKLVRSLGIPITDRHRAQGDA 151


>gi|289167702|ref|YP_003445971.1| ATP-dependent helicase DinG [Streptococcus mitis B6]
 gi|288907269|emb|CBJ22104.1| ATP-dependent helicase DinG [Streptococcus mitis B6]
          Length = 816

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 20/171 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH---- 63
           R +V D+E T   SK  +II++G V + D    +             N  E L  H    
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGKIVDHY-------TSDVNPHEPLDAHIKEL 58

Query: 64  -GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P  
Sbjct: 59  TGLTDKRLAQAPDFSQVARKIFDLV--KDGIFVAHNVQFDANLLAENLFFEGYELRNPR- 115

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +DT+ +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 116 -VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|119962878|ref|YP_948455.1| DNA polymerase III subunit epsilon [Arthrobacter aurescens TC1]
 gi|119949737|gb|ABM08648.1| putative DNA polymerase III epsilon subunit [Arthrobacter aurescens
           TC1]
          Length = 236

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 11/176 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   N + +  FD+ETTG +S++ RI+   ++ ++D          +L   G +   EA 
Sbjct: 1   MSSWNTLSRAAFDLETTGKNSRSARIV-TASITVVDAHGGLIAEHEWLADPGVEIPLEAS 59

Query: 61  KLHGITDEFLK--DKPSFS---SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           ++HG+T E  +   +P+      +       F++     IA NA +D   + AE  R   
Sbjct: 60  EVHGVTTEKARAEGRPAAEVTREVAGVLQGLFDD-GTPVIAFNASYDFTVLAAESARYGV 118

Query: 116 DPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLL 167
             L    ++D   + ++  ++   +  L +LC+ YG+  T +H S   AL    +L
Sbjct: 119 PQLSRFPVLDPYVMNKQMDRYRKGKRTLTALCEEYGVDLTNAHTSAADALATLRVL 174


>gi|111022071|ref|YP_705043.1| DNA polymerase III subunit epsilon [Rhodococcus jostii RHA1]
 gi|110821601|gb|ABG96885.1| DNA polymerase [Rhodococcus jostii RHA1]
          Length = 231

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 17/153 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV---FLCPNGRKNSPEALKLHGIT 66
             FD+ETTG D  + RI+      +  +   +RT+ +      P G      A  +HGI+
Sbjct: 10  CAFDLETTGPDPTDARIVSACIAVVDAHHFESRTWLLDPEVPIPQG------ASDVHGIS 63

Query: 67  DEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            E+ +         +  I     D +   +A  +A NA +D+  ++ E  R+    L   
Sbjct: 64  TEYARAHGQDYATGYGEIREALHDAWTRDHAV-VAFNASYDLTVMHTEGLRLGLAELVTG 122

Query: 122 RIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
            ++D   I R   +H   R  L ++C+ YGI +
Sbjct: 123 IVVDPYVIDREMDRHRKGRRTLGAVCEHYGIAL 155


>gi|149276274|ref|ZP_01882418.1| DNA polymerase III epsilon subunit [Pedobacter sp. BAL39]
 gi|149232794|gb|EDM38169.1| DNA polymerase III epsilon subunit [Pedobacter sp. BAL39]
          Length = 334

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 9/108 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL-HGITDEF 69
           FD+ETTG++  +DRI+EI  ++ + D ++  +T ++    N     P A  L HGI DE 
Sbjct: 12  FDLETTGVNVGSDRIVEIAILKAMPDGTELIKTLRI----NPEMPIPLASSLIHGIYDEH 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           +  +P+F ++ +E  +F  +  A+   +N+ +FD+  +  E  R   D
Sbjct: 68  IAAEPTFKAVAAEVAEFIGD--ADLAGYNSNRFDIPVLLEEFLRAGVD 113


>gi|327313911|ref|YP_004329348.1| exonuclease [Prevotella denticola F0289]
 gi|326945021|gb|AEA20906.1| exonuclease [Prevotella denticola F0289]
          Length = 163

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 9/153 (5%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D ET   +  +  +  +G V ++   +   TF   + P          ++HG+T E   D
Sbjct: 8   DFETANFERSS--VCSVGVV-IVRGGEVADTFYSLVHPEPNYYQWRCTQVHGLTREDTDD 64

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P FS +++        +    +AHNA FD G + A  Q    D  D    +DTL  ARR
Sbjct: 65  APVFSKVWARIEPLI--EGLPLVAHNAPFDKGCLRACFQTYRMDYPD-YEFLDTLRAARR 121

Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
             P  S + L+++    G  +S    H AL D+
Sbjct: 122 VFPRLSNHQLHTVSAACGYDLS--RHHHALADA 152


>gi|195977857|ref|YP_002123101.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974562|gb|ACG62088.1| probable ATP-dependent helicase DinG [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 821

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI +   +  V D+E T        II++G V +++  +   ++Q  + P+    S    
Sbjct: 1   MINEFSQKYAVIDLEATS-PGPTASIIQVGIV-IIEGKEIVDSYQTDVNPH-EPLSDHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS +    ++    ++  ++AHN  FD   +   L     D L P
Sbjct: 58  ALTGITDQQLAQAPDFSQVARTIFELI--EDCVFVAHNVTFDANLLAEALFLEGYDLLTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DT+ +A+  +PS  +  L+ L +   + +S    H A+ D+   ++++IK++
Sbjct: 116 R--VDTVELAQIFYPSLEKYSLSHLSEVLDLNLS--DAHTAIADAQATANLFIKLL 167


>gi|172040446|ref|YP_001800160.1| hypothetical protein cur_0766 [Corynebacterium urealyticum DSM
           7109]
 gi|171851750|emb|CAQ04726.1| hypothetical protein cu0766 [Corynebacterium urealyticum DSM 7109]
          Length = 239

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 26/183 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---------LDYSKTNRTFQVF-LCPNGRKNSPEA 59
           +  D+ETTGLD K D I+ IG V +          DY+  +   +V    P G     E+
Sbjct: 44  LAVDVETTGLDPKKDLILSIGWVPMTGGRIFPAEADYAVIHHEPEVVERVPAGM----ES 99

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGIT   ++       + S        +    + H +  +  F+    ++     L 
Sbjct: 100 AKIHGITHTDIEAGEPLRDVLSRL--LLALRGRAMVVHFSPIETQFLGQACRQHFGSGLS 157

Query: 120 PSRIIDTLSIARR------KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            S +IDT +I RR       +P   +  L  + +RYG  + H   H AL D+    ++ +
Sbjct: 158 VS-VIDTFAIERRYFERMATYPRGEDLRLPRVRERYG--LPHYGSHNALSDALACGELLL 214

Query: 173 KMM 175
            M+
Sbjct: 215 AML 217


>gi|88812259|ref|ZP_01127510.1| putative DNA polymerase III epsilon chain [Nitrococcus mobilis
          Nb-231]
 gi|88790510|gb|EAR21626.1| putative DNA polymerase III epsilon chain [Nitrococcus mobilis
          Nb-231]
          Length = 186

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
          +  +    G D    R++EIG VE+ D   T R+F  +  P GR     AL+  G++ E 
Sbjct: 5  LALEAVVVGDDPTTSRVVEIGCVEMHDDHPTGRSFHSYANP-GRDLDVAALQAKGLSTEA 63

Query: 70 LKDKPSFSSI 79
          L DKP F  I
Sbjct: 64 LADKPRFGDI 73


>gi|223933999|ref|ZP_03625955.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis
           89/1591]
 gi|223897336|gb|EEF63741.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis
           89/1591]
          Length = 822

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 22/169 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61
           R  V D+E TG  + + +II+IG V     E++D Y+     ++  L  +  KN      
Sbjct: 12  RYAVVDLEATGTGT-DAKIIQIGIVLVENGEIIDSYATDINPYE--LLDDHIKN------ 62

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L   P F  + S  +D     +A ++AHN KFD   +   L     + L P 
Sbjct: 63  LTGITDQQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTPR 120

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCK--RYGITISHRSKHGALLDSHLL 167
             +DT+ +++   P+  +  L +L +    G+  +H +   AL  + LL
Sbjct: 121 --VDTVELSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISDALATARLL 167


>gi|164686248|ref|ZP_02210278.1| hypothetical protein CLOBAR_02686 [Clostridium bartlettii DSM
           16795]
 gi|164601850|gb|EDQ95315.1| hypothetical protein CLOBAR_02686 [Clostridium bartlettii DSM
           16795]
          Length = 174

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 7/156 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M + N  + IV D+ETTGLD  +   I    +  +  +K  R +   + P G   S    
Sbjct: 1   MNKYNDDKYIVVDLETTGLDPFSGCEIIEIGITEIVNNKIGRNYSRLVKPKGIIPS-HIT 59

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +  IT++ ++D  S  ++   F  +  +     IAHNAKFD+ F+N  L  +  + ++ 
Sbjct: 60  NITSITNDMVEDAESLETVLPNFRKYVGD--TTIIAHNAKFDLKFLNYYLDLLGLEKINN 117

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISH 154
              I TL + +R   +      L + C  Y I   H
Sbjct: 118 H--ICTLEMLKRCKSYKGKNKKLETACNYYNIVNEH 151


>gi|259502770|ref|ZP_05745672.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           antri DSM 16041]
 gi|259169273|gb|EEW53768.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           antri DSM 16041]
          Length = 178

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 5/114 (4%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI +  + + P+F  ++     F+       IAHN +FD G + + L+    +P  
Sbjct: 50  VQIHGIHERDVANAPTFPEVWEHIKGFYTPDKLV-IAHNNRFDNGVLKSTLEHYGIEP-P 107

Query: 120 PSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             + +DT+  +RR  P   N  LN++C    I + H   H AL D+   +++ +
Sbjct: 108 AYQTLDTVVSSRRLLPGLSNYKLNTVCAALNIDLHHH--HNALDDAQACANILL 159


>gi|323466410|gb|ADX70097.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus H10]
          Length = 927

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 15/170 (8%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG    K   II+ G   ++   K  +T+   + P+ R+     + L GI +E 
Sbjct: 12  VVDLETTGTQREKGHHIIQFGCA-IIKNMKVVKTYSFMINPH-REIPQSVVNLTGIHNED 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++ +  FS    +  +    +   ++AHN  FD+ F+N EL +   + L  ++ IDT+ +
Sbjct: 70  VQGEDDFSVYAPKIIEIL--KGTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAIDTVEL 126

Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+   P+      +DL +  K     I H + H A  D++  + + IK++
Sbjct: 127 AKIAFPTLPSYKLSDLTAQLK-----IKHLNPHKADSDAYGTAVLLIKII 171


>gi|291067016|gb|ADD74132.1| DNA polymerase III epsilon subunit-like protein [Rickettsia felis]
          Length = 377

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 10/103 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-----KLHG 64
           I  D ETTGL  + D+I+E+G V+  +Y++  R +Q+    N  ++  + +     +L G
Sbjct: 126 IFLDTETTGLSHEKDKILELGMVK-FEYTEDGRIYQIVDELNQYQDPQQPIPLRITELTG 184

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE ++ K    +I  E    F E+    IAHNA FD  F +
Sbjct: 185 ITDEMVQGK----AIDQEAVTQFLEEVDIIIAHNAAFDRPFFD 223


>gi|332185524|ref|ZP_08387272.1| exonuclease family protein [Sphingomonas sp. S17]
 gi|332014502|gb|EGI56559.1| exonuclease family protein [Sphingomonas sp. S17]
          Length = 191

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 28/175 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIG------AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ET    S+   I +IG       VE+L Y         F   N        + +H
Sbjct: 7   VVIDVETAC--SRTSSICQIGIVGYAAGVEVLAYETLVDPCDDFSSFN--------IGIH 56

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--S 121
           GIT + +  KP+F+++  E       +    +AH+  FD G +    +R   D L P  +
Sbjct: 57  GITADHVLGKPTFAALHPELAMHLGGRVT--VAHSG-FDKGALGRACER---DALPPIAA 110

Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R +D+++IARR  P   N  LN+L     + + HR  H AL D+     V ++ M
Sbjct: 111 RWLDSVTIARRAWPELPNHKLNTLAAF--LELEHR-HHDALSDARAAGQVVLRAM 162


>gi|157370180|ref|YP_001478169.1| exodeoxyribonuclease X [Serratia proteamaculans 568]
 gi|157321944|gb|ABV41041.1| Exonuclease RNase T and DNA polymerase III [Serratia proteamaculans
           568]
          Length = 222

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 23/163 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL+     ++E+ +V+L+D    N      + P+ R    EA+ +H IT++ +
Sbjct: 5   VIDTETCGLEGG---VVEVASVDLIDGQIAN-PMSDLISPD-RPIGIEAMAIHHITEQMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP  +     +     + +  ++AHNA FD G +          P      I T+ +A
Sbjct: 60  EGKPRIAVAIGRY-----QGSPYYVAHNAAFDRGVL----------PEMHGAWICTMKLA 104

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH-LLSDVYI 172
           R  +P  +     L  RY + +  +      L  H  L D Y+
Sbjct: 105 RNLYPDIKYGNQYL--RYALNLDVQLPQDTTLYPHRALYDCYV 145


>gi|237785374|ref|YP_002906079.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758286|gb|ACR17536.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 555

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 11/170 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKN-SPEALKLHGIT 66
           I FD+ET   +  N  I + G V  + +         +LC  P+   + +P    +HGIT
Sbjct: 224 IAFDVETA--NEANGSICQFGVV--VYHEGKEAESHTWLCQPPSAWPDFTPATTAIHGIT 279

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + ++PS      +      ++N   +AHNAKFD+  +  +  R  K  +       T
Sbjct: 280 PDKVANEPSCHDRLEQLAALLRKENLPIVAHNAKFDMVALR-DAARAEKVDIPHITFACT 338

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +AR  HP   N  L ++ +  G    H   H AL D+    ++ + + 
Sbjct: 339 YLLARALHPELPNYKLTTVAQSAGSEAFHH--HDALADARACGEIMLSLC 386


>gi|225870177|ref|YP_002746124.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047]
 gi|225699581|emb|CAW93205.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. equi
           4047]
          Length = 823

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI +   +  V D+E T        II++G V +++  +   ++Q  + P+    S    
Sbjct: 1   MINEFSQKYAVIDLEATS-PGPTASIIQVGIV-IVEGKEIVDSYQTDINPH-EPLSDHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS +    ++    ++  ++AHN  FD   +   L     D L P
Sbjct: 58  ALTGITDQQLAQAPDFSQVARTIFELI--EDCVFVAHNVTFDANLLAEALFLEGYDLLTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DT+ +A+  +PS  +  L+ L +   + +S    H A+ D+   ++++IK++
Sbjct: 116 R--VDTVELAQIFYPSLEKYSLSHLSEVLDLNLS--DAHTAIADAQATANLFIKLL 167


>gi|254227511|ref|ZP_04920943.1| exonuclease family [Vibrio sp. Ex25]
 gi|262396223|ref|YP_003288076.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|151940123|gb|EDN58949.1| exonuclease family [Vibrio sp. Ex25]
 gi|262339817|gb|ACY53611.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
          Length = 236

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 12/166 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTG+D++ D+I+ IG V+L LD      + + ++C +G+   PE  K++G+T +
Sbjct: 53  VALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYIC-HGQFIKPETAKINGLTPQ 111

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L          +   +    +    +AH    +  FI+A      +    P+  IDTL 
Sbjct: 112 DLAKGLPLDEGMNRLLERITGKVV--LAHGCCIEKAFIHAYFSSRYQVEDFPAYFIDTLQ 169

Query: 129 I------ARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHL 166
           I      A +    S   L+ L + Y +   +SH +   AL  + L
Sbjct: 170 IEKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAEL 215


>gi|148244632|ref|YP_001219326.1| ribonuclease T [Candidatus Vesicomyosocius okutanii HA]
 gi|146326459|dbj|BAF61602.1| ribonuclease T [Candidatus Vesicomyosocius okutanii HA]
          Length = 193

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 25/194 (12%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD-----YSKTNRTFQV--FLC 49
           M+ K+++R    +V DIET G + K D ++EI  + + +D     Y K  + F +  F  
Sbjct: 1   MLIKDRIRGYLPVVIDIETGGFNEKTDAMLEICTIIIGIDKMNNLYPKKPQHFHIEPF-- 58

Query: 50  PNGRKNSPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKF 101
             G    P A+K + I  +      +K+  +   I+++ +    +++   A  + HNA F
Sbjct: 59  -KGSILEPSAIKFNSIDVDNPFRMAVKEVDAIKQIYTKVYTELKQKDCTRAILVGHNAFF 117

Query: 102 DVGFINAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
           D+GF+ A   R   K P      +DT+S++   +  +   L    ++  I       H A
Sbjct: 118 DLGFLRAATNRCKLKSPFHQFSTLDTVSLSALCYGETV--LAKAIRKADIEWDDTCAHSA 175

Query: 161 LLDSHLLSDVYIKM 174
           L D+   ++++ K+
Sbjct: 176 LYDTQKTAELFCKV 189


>gi|256822949|ref|YP_003146912.1| ribonuclease T [Kangiella koreensis DSM 16069]
 gi|256796488|gb|ACV27144.1| ribonuclease T [Kangiella koreensis DSM 16069]
          Length = 200

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNSPEALKLH 63
           ++ D+ET G ++  D ++E+ AV    +++  +     ++   + P  G     +AL   
Sbjct: 16  VIIDVETGGFNAATDALLELAAVTT-GFNEQGKLEIKNSYHFNVEPFEGANIEQKALDFT 74

Query: 64  GI-TDEFLKDKPS-FSSIFSEFWDFFNEQ-NAEW-----IAHNAKFDVGFINAELQRIN- 114
           GI  D  L+   S   ++ S F D   EQ +AE      + HN+ FD+ F+NA  +R++ 
Sbjct: 75  GIDPDNPLRGAISEHKALKSLFKDLRTEQKDAECNRCVLVGHNSWFDLSFLNAASERVDI 134

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT S++          L   C   GI  S +  H AL D+   ++++  
Sbjct: 135 KRNPFHPFTSFDTASLSALM--LGHTVLAQACDLAGIEFSQKEAHSALYDATKTAELFCL 192

Query: 174 MM 175
           ++
Sbjct: 193 LV 194


>gi|300741873|ref|ZP_07071894.1| putative DNA polymerase III epsilon subunit [Rothia dentocariosa
           M567]
 gi|300381058|gb|EFJ77620.1| putative DNA polymerase III epsilon subunit [Rothia dentocariosa
           M567]
          Length = 230

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 21/174 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  FD+ETTG+D    RI+   ++ LL+   + +    +L   G +    A  +HGIT E
Sbjct: 8   RATFDLETTGVDVTTARIV-TASLLLLNPDGSVQRAGEWLANPGIEIPEGAASVHGITTE 66

Query: 69  FLKD--KPS-------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDP 117
           + +   +P+         +I S F D         IA NA +D   ++ E+ R N     
Sbjct: 67  YARSHGQPAQQVIWEVAGAIGSLFLDGIPV-----IAFNAAYDFSVLHHEMLRYNIAHGE 121

Query: 118 LDPSRIIDTLSIARRKHPSSRND--LNSLCKRYGITI--SHRSKHGALLDSHLL 167
           L    I+D   I +   P  R +  L +L   +G+ +  +H SK  AL    LL
Sbjct: 122 LPAGHILDPYVIHKHVIPRKRGNRKLETLTAEHGVVLENAHTSKADALAAERLL 175


>gi|153838933|ref|ZP_01991600.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149747604|gb|EDM58532.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 236

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 12/166 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTG+D++ D+I+ IG V+L LD      + + ++C +G+   PE  K++G+T +
Sbjct: 53  VALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYIC-HGQFIKPETAKINGLTPQ 111

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L          +   +    +    +AH    +  FI+A      +    P+  IDTL 
Sbjct: 112 DLAKGLPLDEGMNRLLERITGKVV--LAHGCCIEKAFIHAYFSSRYQVEDFPAYFIDTLQ 169

Query: 129 I------ARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHL 166
           I      A +    S   L+ L + Y +   +SH +   AL  + L
Sbjct: 170 IEKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAEL 215


>gi|217972890|ref|YP_002357641.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS223]
 gi|217498025|gb|ACK46218.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS223]
          Length = 228

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 29/186 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +  D+E TGL+ + D+I+ IG V     E+       +  Q+      R +  ++  +HG
Sbjct: 43  VAMDLEMTGLNPQQDQILSIGLVPIERGEIPLARAEQKLVQI------RGSVGQSATIHG 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLD-PSR 122
           I D  L    +        W F N+      +AH A  D  F+  +L  I    L  P+ 
Sbjct: 97  ILDNHLVQAVTIEEAMG--W-FINQTYGRVLVAHYAPLDCRFLQQDLLAIYHQALILPA- 152

Query: 123 IIDTLSIAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            IDTL + R    R+H   +     L +  +RYG+ I   + H AL D+    ++ +  M
Sbjct: 153 -IDTLMLERHRLLREHSVIKEGSLRLGACRERYGLPIY--TAHSALTDALACGELLLAQM 209

Query: 176 --VGGS 179
             +GG+
Sbjct: 210 AAMGGA 215


>gi|330685586|gb|EGG97232.1| exonuclease [Staphylococcus epidermidis VCU121]
          Length = 184

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 9/155 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   + K   I  +G V++++ ++   +F   + PN    S + + +HGI  E 
Sbjct: 7   VALDFETA--NGKRTSICSVGMVKVIE-NQITESFHTLVNPNDYF-SEQNISVHGIHPED 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P+FS ++     F ++     +AHNA FD+  ++  +Q I  +    +    +  +
Sbjct: 63  VASSPNFSYVYPYMMQFIDQ--LPVVAHNAAFDMNVLHQSIQAIGLETPHLTYFC-SYQL 119

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A+R   S R  L  +   Y +       H AL D+
Sbjct: 120 AKRTVQSHRYGLKHMMDYYQLDF--HGHHDALNDA 152


>gi|319399859|gb|EFV88106.1| exonuclease family protein [Staphylococcus epidermidis FRI909]
          Length = 184

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 11/156 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   + K   I  +G V+++D ++   +F   + P         + +HGI  E 
Sbjct: 7   VALDFETA--NGKRTSICSVGMVKVID-NQITESFHTLVNPFDYFTETN-INVHGIHPED 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTLS 128
           ++D P F  ++     F ++     +AHNA FD+  ++  L+ +N D   PS     +  
Sbjct: 63  VQDAPGFKHVYPYMLQFIDQ--LPVVAHNAAFDMNVLHQSLKSLNIDT--PSLTYFCSYQ 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +A+R   + R  L  L   Y +       H AL D+
Sbjct: 119 LAKRTINAYRYGLKHLMNHYHLDF--HGHHDALNDA 152


>gi|295424856|ref|ZP_06817571.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664]
 gi|295065422|gb|EFG56315.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664]
          Length = 934

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 9/157 (5%)

Query: 11  VFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG   +N+  II+ G   ++   K  +T+   + P+ R+       L  I +E 
Sbjct: 12  VVDLETTGTQRENNNHIIQFGCA-IIKNMKVVKTYSFMINPH-REIPLSVQNLTRIHNED 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P FS    +       ++  ++AHN  FD+ F+N EL + +  P   ++ IDT+ +
Sbjct: 70  VEKAPDFSHYAKKIIAIL--EDTVFVAHNVNFDLPFLNYELMQ-HGYPALTNKAIDTVEL 126

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A+   P+     L+ L  R  + I H + H A  D++
Sbjct: 127 AKIAFPTLPSYKLSDLTSR--LAIKHLNPHKADSDAY 161


>gi|302537604|ref|ZP_07289946.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
 gi|302446499|gb|EFL18315.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
          Length = 253

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 15/156 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68
           + FD+ETTG +    RI+    VE+       R  + +L   G     EA  +HGI+ E 
Sbjct: 20  VGFDLETTGTEPGESRIVTAAVVEV--RGGEVRARRGWLADPGIPIPGEAAAIHGISTER 77

Query: 69  -FLKDKPSFSSIFSEFWDFFN--EQNAEWIAHNAKFDVGFINAELQRINKDPL------- 118
              + +P+                  A  +A+NA FD+  ++AEL R     L       
Sbjct: 78  AVAEGRPAAEVAEEVAAALVEHWRGGAVVVAYNAAFDLTLLSAELARYRLPSLADRLGGP 137

Query: 119 DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
           +   ++D L+I R   +    +  L ++C  YG+T+
Sbjct: 138 ETGPVVDPLTIDRAVDRFRRGKRTLEAVCGVYGVTL 173


>gi|218680718|ref|ZP_03528615.1| dephospho-CoA kinase protein [Rhizobium etli CIAT 894]
          Length = 238

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 25/28 (89%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVEL 34
           MR+I+FD ETTGLD++ DRIIEIG +EL
Sbjct: 203 MREIIFDTETTGLDNRADRIIEIGGIEL 230


>gi|254439757|ref|ZP_05053251.1| exonuclease superfamily [Octadecabacter antarcticus 307]
 gi|198255203|gb|EDY79517.1| exonuclease superfamily [Octadecabacter antarcticus 307]
          Length = 203

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 15/173 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
              R I  D+ET G    N  I +IG    +  +   +T+ VF+ P      P   +LHG
Sbjct: 14  GPFRFIALDVETAG--KTNGGICQIGLC-FVSETGAVQTYSVFIDPE-EPFEPFNTELHG 69

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + +    +F +++   +D     NA  +  ++ FD   + +   R +  P+  S   
Sbjct: 70  ISADTVAGAGTFPTVYGALFDLL---NAHSLVQHSTFDEKALTSACARYDL-PMITSHWT 125

Query: 125 DTLSIARRKHP----SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +++S+AR   P    +  + L +L K  G+   H   H A  D+   + V +K
Sbjct: 126 NSVSVARHAWPELKGAGGHGLANLKKHLGLEFHH---HDAGEDARAAATVVLK 175


>gi|320533707|ref|ZP_08034325.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134075|gb|EFW26405.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 264

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 82/214 (38%), Gaps = 39/214 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTN---RTFQVFLCPNGRKNSPEALKLHGITDE 68
           FD ETTG+D   DR++    V   +        ++   +L   G +    A  +HG+T E
Sbjct: 32  FDTETTGVDPSGDRLVTAALVWRAEPQADGVRPQSVTTWLADPGVEIPEAASAVHGVTTE 91

Query: 69  FLK--DKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRIN--------- 114
             +   +P  + + +E  D            IA NA +D+  + AEL R           
Sbjct: 92  RARAEGRP-VTEVLTEVSDHLVAAMTAGTPVIAFNASYDLTLMEAELARHGLPTMRSRLG 150

Query: 115 ------KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                  DPL   R +D     +R+       L  LC+ YG+ + + + H A +D     
Sbjct: 151 RELGPIADPLVLDRAVDRYRRGKRR-------LGDLCEVYGVHV-NEALHTAEVDVAATL 202

Query: 169 DVYIKMMVGGSQIN-------FGFKTNEDRFFKE 195
           DV   +     Q++         F+T   R + E
Sbjct: 203 DVLEALAAAHPQVSKLGPDELVTFQTRAHRTWAE 236


>gi|213962149|ref|ZP_03390413.1| exonuclease [Capnocytophaga sputigena Capno]
 gi|213955155|gb|EEB66473.1| exonuclease [Capnocytophaga sputigena Capno]
          Length = 258

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 5/106 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D   DRI+EI  +++  Y   N+  + +L          A  +HGITDE + 
Sbjct: 12  FDLETTGIDITKDRIVEISILKV--YPNGNKESKTWLVNPTIPIPKAASDVHGITDERVA 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
            +P+F  +  +  +    ++++   +N+ +FD+  +  E+ R   D
Sbjct: 70  CEPTFKELAKQIHNMI--KDSDLAGYNSDRFDIPLLAEEMLRAEVD 113


>gi|312172662|emb|CBX80918.1| exodeoxyribonuclease X [Erwinia amylovora ATCC BAA-2158]
          Length = 221

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V++++    N      + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGLQGG---VVEVASVDVINGQIVN-PMSDLISPD-RPISRQAIAVHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP+       +       +  ++AHNA FD   +          P      I T+++A
Sbjct: 59  RGKPTIEQAIGRY-----HGSPFYVAHNASFDRRML----------PEMHGEWICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSK---HGALLDSHLLSDVYIKMM 175
           RR  P  +    SL +   + +S  ++   H AL D ++ + + I++M
Sbjct: 104 RRLWPGLKYTNESLRQSLQLEVSPPAELHAHRALYDCYVTAALLIRIM 151


>gi|292488519|ref|YP_003531403.1| exodeoxyribonuclease X [Erwinia amylovora CFBP1430]
 gi|292899700|ref|YP_003539069.1| exodeoxyribonuclease X [Erwinia amylovora ATCC 49946]
 gi|291199548|emb|CBJ46665.1| exodeoxyribonuclease X [Erwinia amylovora ATCC 49946]
 gi|291553950|emb|CBA20995.1| exodeoxyribonuclease X [Erwinia amylovora CFBP1430]
          Length = 221

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V++++    N      + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGLQGG---VVEVASVDVINGQIVN-PMSDLISPD-RPISRQAIAVHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP+       +       +  ++AHNA FD   +          P      I T+++A
Sbjct: 59  RGKPTIEQAIGRY-----HGSPFYVAHNASFDRRML----------PEMHGEWICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSK---HGALLDSHLLSDVYIKMM 175
           RR  P  +    SL +   + +S  ++   H AL D ++ + + I++M
Sbjct: 104 RRLWPGLKYTNESLRQSLQLEVSPPAELHAHRALYDCYVTAALLIRIM 151


>gi|242241732|ref|ZP_04796177.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144]
 gi|242234822|gb|EES37133.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144]
          Length = 184

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 11/156 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   + K   I  +G V+++D ++   +F   + P         + +HGI  E 
Sbjct: 7   VALDFETA--NGKRTSICSVGMVKVID-NQITESFHTLVNPFDYFTETN-INVHGIHPED 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTLS 128
           ++D P F  ++     F ++     +AHNA FD+  ++  L+ +N D   PS     +  
Sbjct: 63  VQDAPGFKHVYPYMLQFIDQ--LPVVAHNAAFDMNVLHQSLKSLNIDT--PSLTYFCSYQ 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +A+R   + R  L  L   Y +       H AL D+
Sbjct: 119 LAKRTINAYRYGLKHLMNHYHLDF--HGHHDALNDA 152


>gi|188997445|ref|YP_001931696.1| Exonuclease RNase T and DNA polymerase III [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188932512|gb|ACD67142.1| Exonuclease RNase T and DNA polymerase III [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 203

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 13/172 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD ETTGL+ K D I+ I AV++ D     N  F V + P+ R+ + + +K+HG+  +
Sbjct: 35  VAFDTETTGLNPKVDDILSIAAVKIKDNKILLNERFNVIVKPD-REINEDVIKIHGLRKK 93

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+           F  F   +    + +  +FDV  IN   ++++   L P++ I+  +
Sbjct: 94  DLESGIPIEEAVDRFVHFIGSR--PLVGYYLEFDVAMINKYFKKLSGTTL-PNKQIEVSA 150

Query: 129 IARRKH----PSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +         P    DL  +S+ K   + I    KH AL D+ + + +++K+
Sbjct: 151 LYYDYKIGLIPQGFVDLRFDSILK--DLDIPTFGKHDALNDAIMTALIFLKL 200


>gi|268319456|ref|YP_003293112.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785]
 gi|262397831|emb|CAX66845.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785]
          Length = 938

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 11/153 (7%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   ++ D II+ G   ++   K  +T+   + P+  +  P+A++ L  I++E
Sbjct: 12  VVDLETTGTQRNQGDHIIQFGCA-IIKKRKVVKTYSFLINPH--REIPQAVENLTHISNE 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     FS    +       +N  ++AHN  FD+ F+N EL     +PL   + +DT+ 
Sbjct: 69  DVAKAHDFSYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAVDTVE 125

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           +A+   P+     L  L  R  + I H + H A
Sbjct: 126 LAQIVFPTFPSYKLRDLTAR--LRIKHLNPHRA 156


>gi|115379647|ref|ZP_01466730.1| DNA polymerase III epsilon subunit [Stigmatella aurantiaca DW4/3-1]
 gi|310819920|ref|YP_003952278.1| exonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|115363357|gb|EAU62509.1| DNA polymerase III epsilon subunit [Stigmatella aurantiaca DW4/3-1]
 gi|309392992|gb|ADO70451.1| Exonuclease [Stigmatella aurantiaca DW4/3-1]
          Length = 219

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 19/185 (10%)

Query: 7   MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNS-PEALKLH 63
           +R + F D+ETTGLD+    ++E+  + +   S K    ++  + P    ++ PEAL + 
Sbjct: 28  LRTLCFVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEARVQPTRLADAHPEALAVC 87

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDPS 121
           G +DE  +D  S   + +               HN  FD GF+    +R  +    +D  
Sbjct: 88  GYSDEEWRDALSLEEVLATVTPLLAGTLVA--GHNTSFDWGFLVEGYRRTALTLPSVDYH 145

Query: 122 RIIDTLSIARRKHPSSRND---LNSLCKRYGITISHR-SKHGALLDSHLLSDV----YIK 173
           R +DT S+A     +   +   LN+L + +GI   HR + H A+ D+    +V     ++
Sbjct: 146 R-LDTASLAWPLLATGEVESLSLNALARHFGI---HRPTPHRAMADARCALEVARRLAVR 201

Query: 174 MMVGG 178
           M  GG
Sbjct: 202 MSRGG 206


>gi|227890026|ref|ZP_04007831.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC
           33200]
 gi|227849470|gb|EEJ59556.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC
           33200]
          Length = 938

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 11/153 (7%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   ++ D II+ G   ++   K  +T+   + P+  +  P+A++ L  I++E
Sbjct: 12  VVDLETTGTQRNQGDHIIQFGCA-IIKKRKVVKTYSFLINPH--REIPQAVENLTHISNE 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     FS    +       +N  ++AHN  FD+ F+N EL     +PL   + +DT+ 
Sbjct: 69  DVAKAHDFSYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAVDTVE 125

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           +A+   P+     L  L  R  + I H + H A
Sbjct: 126 LAQIVFPTFPSYKLRDLTAR--LRIKHLNPHRA 156


>gi|298372076|ref|ZP_06982066.1| exonuclease [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274980|gb|EFI16531.1| exonuclease [Bacteroidetes oral taxon 274 str. F0058]
          Length = 252

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 68/130 (52%), Gaps = 10/130 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITD 67
           + FD+ETTG++   DRI+E+  +++  + +KT++T ++    N   + PE +  +HGI D
Sbjct: 10  VFFDLETTGINVSTDRIVELTYLKVEPNGNKTSKTIKI----NPEMHIPEQSSAIHGIYD 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIID 125
           + + D P+F  I +      + +  +    N+  FD+  +  E  R+  D  L   + +D
Sbjct: 66  QDVADCPTFRQIAANLAK--DIEGCDLAGFNSVNFDIPLLVEEFLRVGVDIDLKKRKFVD 123

Query: 126 TLSIARRKHP 135
            + I  +K P
Sbjct: 124 VMVIFYKKEP 133


>gi|119774662|ref|YP_927402.1| DNA polymerase III subunit epsilon-related 3'-5' exonuclease-like
           protein [Shewanella amazonensis SB2B]
 gi|119767162|gb|ABL99732.1| DNA polymerase III epsilon subunit-related 3'-5' exonuclease-like
           protein [Shewanella amazonensis SB2B]
          Length = 228

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 13/162 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+E TGLD   D+I+ IG V  +D           +    + +  ++  +HGITD  
Sbjct: 44  LALDLEMTGLDPGRDQILAIGVVP-IDGGIIQLQGAESVLVEIQGSVGQSAVIHGITDRE 102

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L +    +   +  W          +AH+A  D+ FI A + R     + P   IDTL++
Sbjct: 103 LHNALPLADAMN--WLMQKMNGRILVAHHAPLDLAFIRANMSRSLGISM-PMLAIDTLAL 159

Query: 130 AR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDS 164
            R    R H + +     L +  +RYG+ +     H AL D+
Sbjct: 160 ERQRLLRIHDAIQEGSLRLGASRQRYGLPVY--DAHNALTDA 199


>gi|256372239|ref|YP_003110063.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008823|gb|ACU54390.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 475

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 5/125 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +R  + D+ETTG  S  D + E+ A+ ++   +     Q  L    R   P  + L GI+
Sbjct: 16  VRFAILDVETTGAASGADELTEV-AMMVVQEGRALAHLQ-SLVHTDRPIPPAIVALTGIS 73

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E + D PS  ++          +    + HN +FD  F+ A         L    ++DT
Sbjct: 74  NELVADAPSARTVIERTARLL--EGTVMVGHNVRFDRSFLGAAADAAGIT-LPEVPVLDT 130

Query: 127 LSIAR 131
           L+++R
Sbjct: 131 LTLSR 135


>gi|213584452|ref|ZP_03366278.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 216

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 22/153 (14%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
           +EI +V+++D +  N      + P+ R  +P+A+ +H IT+  + DKP    +   ++  
Sbjct: 1   VEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMVADKPWIEDVIPLYY-- 56

Query: 87  FNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLC 145
                +EW +AHNA FD   +          P  P   I T+ ++RR  P  +    +L 
Sbjct: 57  ----GSEWYVAHNASFDRRVL----------PELPGEWICTMKLSRRLWPGIKYSNMALY 102

Query: 146 KRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           K   +++        H AL D ++ + + I +M
Sbjct: 103 KSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 135


>gi|328885949|emb|CCA59188.1| putative DNA polymerase III epsilon subunit [Streptomyces
           venezuelae ATCC 10712]
          Length = 240

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 27/162 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68
           + FD+ETTG D    RI+    V   D     +  + +L   G +   +A  +HGI+ E 
Sbjct: 9   VGFDLETTGTDPLEARIVTASIVGFHDGRVVRQ--RDWLADPGIRIPEQASAIHGISSER 66

Query: 69  -FLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---------QR 112
              + +P        +   + +W+    Q    +A+NA FD+  + AEL         +R
Sbjct: 67  AAAEGRPVREVADEIAETLTGYWN----QGVPVVAYNASFDLTLLAAELRRHGLPSLEER 122

Query: 113 INKDPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
           +    + P  ++D  +I R   ++   + +L ++C  YG+ +
Sbjct: 123 LGGTAIGP--VVDPYTIDRAVDRYRRGKRNLEAVCGEYGVVL 162


>gi|255531786|ref|YP_003092158.1| exonuclease RNase T and DNA polymerase III [Pedobacter heparinus
           DSM 2366]
 gi|255344770|gb|ACU04096.1| Exonuclease RNase T and DNA polymerase III [Pedobacter heparinus
           DSM 2366]
          Length = 328

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 9/108 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDEF 69
           FD+ETTG++   DRI+EI  ++ + D S+  +T ++    N     P  A  +HGI DE 
Sbjct: 12  FDLETTGVNVGADRIVEIAILKAMPDGSELIKTMRI----NPEMPIPLYASLIHGIYDEH 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           + ++P F  + +E  DF    +A+   +N+ +FD+  +  E  R   D
Sbjct: 68  IANEPIFKEVATELADFIG--DADLAGYNSNRFDIPVLLEEFLRAGVD 113


>gi|26991449|ref|NP_746874.1| DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440]
 gi|24986524|gb|AAN70338.1|AE016675_8 exonuclease [Pseudomonas putida KT2440]
          Length = 203

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 13/166 (7%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           R  V D ETTG+      R  E+ AV +L+  +    +Q  +  N     P     L GI
Sbjct: 3   RIAVIDFETTGISPGTGCRATEV-AVVMLEGGRIVERYQSLM--NAGVPVPAFVAGLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   L+  P    + +E  +F        +AHNA FD  F + EL RI +    P     
Sbjct: 60  TTAMLRSAPPVEKVMNEVAEFVG--GTPLLAHNAAFDQKFWDYELGRIGRSRSQP--FAC 115

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGIT---ISHRSKHGALLDSHLL 167
           +L ++RR  P++ N  L +L +  G+     +HR+   A + ++LL
Sbjct: 116 SLLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMADAEMAANLL 161


>gi|220935624|ref|YP_002514523.1| ribonuclease T [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996934|gb|ACL73536.1| ribonuclease T [Thioalkalivibrio sp. HL-EbGR7]
          Length = 216

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 86/181 (47%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++++ AV L +D       ++T    + P  G    P++L+++G
Sbjct: 20  VVVDVETGGFNPRTDALLQVAAVLLRMDPEGQLYRHQTLSFHVQPFEGANLDPKSLEVNG 79

Query: 65  ITDEFL-----KDKPSFSSIFS---EFWDFFNEQNAEWIAHNAKFDVGFIN--AELQRIN 114
           I           +K + +++F    E       + A  + HNA FD+ FI+  AE   + 
Sbjct: 80  INPWHPLRIAHPEKDALATVFRGVREEMKLNACKRAILVGHNAGFDLSFIHQGAERAGLK 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P   +DT++++       +  L    +  G+  S+   H A+ D+   +D++  +
Sbjct: 140 RNPFHPFSSLDTVTLSAMAF--GQTVLARAVQAAGMEWSNSEAHSAVYDAEKTADLFCHV 197

Query: 175 M 175
           +
Sbjct: 198 I 198


>gi|94499932|ref|ZP_01306467.1| exonuclease [Oceanobacter sp. RED65]
 gi|94427790|gb|EAT12765.1| exonuclease [Oceanobacter sp. RED65]
          Length = 224

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 23/170 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLD-----YSKTNRTFQVFLCPNGRKNSPEALK 61
           +R +V D ETTGL  K++ ++ IG V +        S  +R  +V      ++   ++  
Sbjct: 41  IRYLVIDTETTGLSPKDNTLLSIGWVAIESGKVKLNSARHRYIKV------KEGVGQSAT 94

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H I D  L+D  + +   +E       +++  + H+A  D+ F+N   +++   PL   
Sbjct: 95  IHQIRDCELQDGVTINQAMAEV--LTAMKDSVLVFHHAPMDMAFLNKYCRQLYNAPLLMP 152

Query: 122 RIIDTLSIARRKH----PSSRNDLNSL--CK-RYGITISHRSKHGALLDS 164
            ++DTL+I + +H     + +N    L  C+ RYG++ +H+  H AL D+
Sbjct: 153 -LVDTLNIEKSRHMHNDQARKNGFFRLAHCRQRYGLS-AHQG-HNALTDA 199


>gi|313500723|gb|ADR62089.1| DNA polymerase III, epsilon subunit [Pseudomonas putida BIRD-1]
          Length = 203

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 13/166 (7%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           R  V D ETTG+      R  E+ AV +L+  +    +Q  +  N     P     L GI
Sbjct: 3   RIAVIDFETTGISPGTGCRATEV-AVVMLEGGRIVERYQSLM--NAGVPVPAFVAGLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   L+  P    + +E  +F        +AHNA FD  F + EL RI +    P     
Sbjct: 60  TTAMLRSAPPVEKVMNEVAEFVG--GTPLLAHNAAFDQKFWDYELSRIGRSRSQP--FAC 115

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGIT---ISHRSKHGALLDSHLL 167
           +L ++RR  P++ N  L +L +  G+     +HR+   A + ++LL
Sbjct: 116 SLLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMADAEMAANLL 161


>gi|262194253|ref|YP_003265462.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077600|gb|ACY13569.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 11/152 (7%)

Query: 7   MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNS-PEALKLH 63
           M+ +VF D ETTGLD +   I+EI A+ +   + +  RT  + + P   +++ PEAL+++
Sbjct: 1   MQPLVFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERTLVLRVRPERLEDADPEALEVN 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPS 121
           G       D  S     +E       + A    HN  FD  F+ A    +   P  LD  
Sbjct: 61  GYHQRVWVDAVSLDEALAELAPML--EGAVLAGHNVAFDRRFLEAAWDYVGHRPENLD-H 117

Query: 122 RIIDTLSIARRKHPSSRND---LNSLCKRYGI 150
             +DT ++A     +   D   L  +C   G+
Sbjct: 118 HALDTAALAFPLLMAGEIDSLSLTPVCAHLGV 149


>gi|223043083|ref|ZP_03613130.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus capitis SK14]
 gi|222443294|gb|EEE49392.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus capitis SK14]
          Length = 900

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 22/167 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68
           + D+ETTG     D II+IG    + + + ++    +  +     +  P    L  I ++
Sbjct: 8   IVDLETTGNQLDYDEIIQIG----ITFVRNHKIIDTYHSMIRTDLEIPPFIQALTSIEED 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-----NAELQRINKDPLDPSRI 123
            L   P F+ +  + +D    ++  ++AHN  FD+ FI     N ++Q        P ++
Sbjct: 64  MLAQAPYFNEVAEDIYD--QIKDCIFVAHNISFDLNFIKNAFNNCDIQ------FKPKKV 115

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           +DTL + +   P+ ++  L+ L + + I +  +HR+   A   + L+
Sbjct: 116 MDTLELFKIAFPTDKSYQLSELAQAHDIPLDKAHRADEDATTTAKLM 162


>gi|148549845|ref|YP_001269947.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1]
 gi|148513903|gb|ABQ80763.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1]
          Length = 211

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 13/166 (7%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           R  V D ETTG+      R  E+ AV +L+  +    +Q  +  N     P     L GI
Sbjct: 3   RIAVIDFETTGISPGTGCRATEV-AVVMLEGGRIVERYQSLM--NAGVPVPAFVAGLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   L+  P    + +E  +F        +AHNA FD  F + EL RI +    P     
Sbjct: 60  TTAMLRSAPPVDKVMNEVAEFVG--GTPLLAHNAAFDQKFWDYELSRIGRSRSQP--FAC 115

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGIT---ISHRSKHGALLDSHLL 167
           +L ++RR  P++ N  L +L +  G+     +HR+   A + ++LL
Sbjct: 116 SLLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMADAEMAANLL 161


>gi|332534582|ref|ZP_08410417.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036002|gb|EGI72481.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 236

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 11/127 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD--YSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65
           +  D ETTGL+S+ND I+ +G V   L+  Y K +R + V      R+N   E++ +HGI
Sbjct: 48  VAMDFETTGLNSQNDDIVSVGLVPFNLERIYCKHSRHWVV----QPRRNLHEESILIHGI 103

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   + D P  + I     +  + +    + H A  +  F+N  L    K+ ++ + ++D
Sbjct: 104 THSEVDDAPDLNQIIEPLLEALSGKVV--VVHYAAIERHFLNNALLLRLKEGIEFA-LVD 160

Query: 126 TLSIARR 132
           T+ I +R
Sbjct: 161 TMEIEKR 167


>gi|300812428|ref|ZP_07092858.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496595|gb|EFK31687.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 930

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 15/170 (8%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG    + DRII+ G   + D  +  +T+   + P+ RK       L GI  + 
Sbjct: 12  VVDLETTGTRKEEGDRIIQFGCAIVKD-GEVVKTYSFMMNPH-RKIPLAVTNLTGIDQKM 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +  F     +  +    Q+  ++AHN  FD  F+N EL     + L   + +DT+ +
Sbjct: 70  VAGQADFKHYAPKIREIL--QDTVFVAHNVNFDFPFLNYELTNAGFEALT-CKAVDTVEL 126

Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+   P+       DL +      + I H + H A  D++  + + +K++
Sbjct: 127 AKIAFPTLPSYKLRDLTA-----SLEIKHANPHKADSDAYGTAVLLLKII 171


>gi|325686250|gb|EGD28293.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 930

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 15/170 (8%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG    + DRII+ G   + D  +  +T+   + P+ RK       L GI  + 
Sbjct: 12  VVDLETTGTRKEEGDRIIQFGCAIVKD-GEVVKTYSFMMNPH-RKIPLAVTNLTGIDQKM 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +  F     +  +    Q+  ++AHN  FD  F+N EL     + L   + +DT+ +
Sbjct: 70  VAGQADFKHYAPKIREIL--QDTVFVAHNVNFDFPFLNYELTNAGFEALT-CKAVDTVEL 126

Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+   P+       DL +      + I H + H A  D++  + + +K++
Sbjct: 127 AKIAFPTLPSYKLRDLTA-----SLEIKHANPHKADSDAYGTAVLLLKII 171


>gi|88802420|ref|ZP_01117947.1| DNA Pol III Epsilon Chain [Polaribacter irgensii 23-P]
 gi|88781278|gb|EAR12456.1| DNA Pol III Epsilon Chain [Polaribacter irgensii 23-P]
          Length = 275

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 10/163 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDE 68
           + FD+ETTG++   DRI+EI  +++  +   N+  + +L  N     P+A + +HGIT+E
Sbjct: 10  VFFDLETTGVNIATDRIVEIAVLKV--FPNGNKESKTWLV-NPEMEIPQASIDVHGITNE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127
            +  +P+F  +  E        +      N +FD+  +  EL R   D  +   + ID  
Sbjct: 67  KVASEPTFKMLAQEVSKLMAGCDLAGFNSN-RFDIPLLAEELMRAGIDFDMKGRKAIDVQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            I  +K    +  L +  K Y         HGA  D++   ++
Sbjct: 126 VIFHKKE---QRTLGAGYKFY-CGKELEGAHGAAADTNATYEI 164


>gi|328480154|gb|EGF49106.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 106

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 7/103 (6%)

Query: 11  VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D+ETTG   K+ DR+I+ G   L+ + K  +T    + P+  ++ P+ + +L GI+ E
Sbjct: 9   VVDLETTGTSVKDGDRMIQFGCA-LVRHGKIIQTISQMINPD--RSVPQTIQRLTGISPE 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            L   P F  +         +    ++AHN  FD  F+NAE +
Sbjct: 66  RLVAAPYFDEVAPALHQVLTK--TVFVAHNVNFDYPFLNAEFE 106


>gi|305667754|ref|YP_003864041.1| putative DNA polymerase III subunit epsilon [Maribacter sp.
           HTCC2170]
 gi|88707591|gb|EAQ99833.1| putative DNA polymerase III epsilon chain [Maribacter sp. HTCC2170]
          Length = 258

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 61/107 (57%), Gaps = 7/107 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDEF 69
           FD+ETTG +  +DRI+EI  +++  + +K ++T+ V    N  K+ P E + +HGI++E 
Sbjct: 12  FDLETTGTNVAHDRIVEISILKVFPNGNKESKTWLV----NPEKDIPAEVIAIHGISNEK 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           + ++P+F  +  E +    + +      N +FD+  +  E+ R + D
Sbjct: 68  VANEPTFKELSKEVYLMIKDCDLGGFNSN-RFDIPLLAEEMLRADVD 113


>gi|296166805|ref|ZP_06849223.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897821|gb|EFG77409.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 330

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+G      R+I +  + L D  +  ++    L P      P    +HG+T   L
Sbjct: 19  VIDVETSGFRPGQARVISLAVLGLDDDGRVEQSVVSLLNPG---VDPGPTHVHGLTAAML 75

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-INAELQRINKDPLDPSRIIDTLSI 129
           +D+P F+ +  +            +AHN  FD  F          + P+D   ++ T+ +
Sbjct: 76  EDQPQFADVVDDV--VKVLDGRTLVAHNVAFDYAFLAAEAELAEAELPID--SVMCTVEL 131

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR      N  L +L   +G  +     H A  D+ +L+ V    +
Sbjct: 132 ARRLDLGIDNLRLETLAAHWG--VPQERPHDAFDDAMVLTGVLASAL 176


>gi|238855548|ref|ZP_04645851.1| DNA polymerase III [Lactobacillus jensenii 269-3]
 gi|260665137|ref|ZP_05865987.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US]
 gi|282932326|ref|ZP_06337761.1| DNA polymerase III [Lactobacillus jensenii 208-1]
 gi|238831832|gb|EEQ24166.1| DNA polymerase III [Lactobacillus jensenii 269-3]
 gi|260561191|gb|EEX27165.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US]
 gi|281303547|gb|EFA95714.1| DNA polymerase III [Lactobacillus jensenii 208-1]
          Length = 316

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 8/167 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF- 69
           + DIETTGL    DR+ E+  +++ +    ++  Q+   P   K      KL+GI ++  
Sbjct: 37  MLDIETTGLSPYRDRVTELAGIKVRNGKVVDKYSQLVKHPKNNKVPQFITKLNGIDEKLI 96

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L          ++F +F  E     + +N  FD+ FI    ++ N + L  +  ID L  
Sbjct: 97  LTQGIPVKEAITDFRNFIGED--VIVGYNVNFDLNFIYDLCEKFNLERL-SNNYIDVLHF 153

Query: 130 ARR-KHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIK 173
           +R      S N L    +R GI+ S  HR    + LD+  + D+Y K
Sbjct: 154 SRVFFKKESHNRLLDCIQRLGISESEAHRGLKDS-LDTKAVFDIYQK 199


>gi|223044042|ref|ZP_03614082.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus capitis
           SK14]
 gi|222442585|gb|EEE48690.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus capitis
           SK14]
          Length = 184

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 11/167 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   + K   I  +G V++++ ++   +F   + P         + +HGI  E 
Sbjct: 7   VALDFETA--NGKRTSICSVGMVKVIN-NQITESFYTLVNPFDYFTETN-INVHGIRPEN 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128
           ++D PSF  ++     F NE     +AHNA FD+  ++  L+ +N +   PS     +  
Sbjct: 63  VEDAPSFEYVYPYMLKFINE--LPVVAHNAAFDMNVLHQSLKSLNIE--TPSMTYFCSYQ 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+R   + R  L  L   Y +       H AL D+   + +  +++
Sbjct: 119 LAKRTIDAYRYGLKHLMNHYQLDF--HGHHDALNDAKACAMITFRLL 163


>gi|326693810|ref|ZP_08230815.1| DNA polymerase III, epsilon subunit [Leuconostoc argentinum KCTC
           3773]
          Length = 177

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 5/112 (4%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI ++ +   P F  I+++    F E     +AHNA FD G +   L     +     
Sbjct: 52  IHGIREQDVAQAPKFPEIWAQVSPLFTEDKL-VVAHNAPFDHGVLQGTLAYYGIEAPH-Y 109

Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            ++DT+  +R+  P  RN  LN++ +  GIT+ H   H AL D+   + + I
Sbjct: 110 MLLDTVRSSRQLFPHFRNHKLNTVAENLGITLDHH--HNALDDAVAAAQILI 159


>gi|157737104|ref|YP_001489787.1| DNA polymerase III subunit epsilon [Arcobacter butzleri RM4018]
 gi|157698958|gb|ABV67118.1| DNA polymerase III [Arcobacter butzleri RM4018]
          Length = 272

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 19/157 (12%)

Query: 13  DIETTG-LDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           DIET G    K  +IIE+GAV     E+LD S  +  F        ++  P   ++  IT
Sbjct: 87  DIETNGGTPKKGFQIIELGAVKYKNGEVLD-SFNSLVF-------AKEIPPYIQEVTKIT 138

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+  P    +  +F +F  +    +IAH+ KFD  FI+   ++ +   L  +R + T
Sbjct: 139 PAMLETAPRIEKVLKDFKEFLGDD--VFIAHDIKFDYNFISDSFEKYSLGKL-LNRKLCT 195

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITIS--HRSKHGAL 161
           + +A+R   S +  L+SL +   I I   HR+ + AL
Sbjct: 196 IDLAKRTIKSEKYGLSSLKELLNIDIENHHRAYYDAL 232


>gi|149197350|ref|ZP_01874401.1| DNA polymerase III [Lentisphaera araneosa HTCC2155]
 gi|149139368|gb|EDM27770.1| DNA polymerase III [Lentisphaera araneosa HTCC2155]
          Length = 210

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 11/173 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLH 63
           +K+  +V D E TGL  K D+++ I AV++     ++  +F   +    +K   E + +H
Sbjct: 26  SKLDYVVIDCEMTGLKPKQDKLLSIAAVKISQGRIQSQESFYRVIFQEKQKLRDETILIH 85

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDPSR 122
            +  E +       ++  EF DF   QN   + H    D+ F+N  +      P LD   
Sbjct: 86  RLNHEQISTGSDQIAVLKEFSDFC--QNCIPVGHFFDIDLSFLNPVMPLPFLYPHLDTRL 143

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++ TL    +  PSS   LN LC  Y   +     H AL D+   + +++K++
Sbjct: 144 LVKTL----QPCPSSIQ-LNELCDFYN--LPSFEAHNALGDATSTACLFLKIL 189


>gi|104774002|ref|YP_618982.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423083|emb|CAI97804.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|325125707|gb|ADY85037.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 930

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 15/170 (8%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG    + DRII+ G   + D  +  +T+   + P+ RK       L GI  + 
Sbjct: 12  VVDLETTGTRKEEGDRIIQFGCAIVKD-GEVVKTYSFMMNPH-RKIPLSVTNLTGIDQKM 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +  F     +  +    Q+  ++AHN  FD  F+N EL     + L   + +DT+ +
Sbjct: 70  VAGQADFKHYAPKIREIL--QDTVFVAHNVNFDFPFLNYELTNAGFEALT-CKAVDTVEL 126

Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+   P+       DL +      + I H + H A  D++  + + +K++
Sbjct: 127 AKIAFPTLPSYKLRDLTA-----SLEIKHANPHKADSDAYGTAVLLLKII 171


>gi|86360676|ref|YP_472564.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42]
 gi|86284778|gb|ABC93837.1| probable polymerase epsilon subunit protein [Rhizobium etli CFN 42]
          Length = 326

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 16/107 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+ ++D IIEIGAV     D         ++  L    R   P+  +L GI
Sbjct: 75  VILDTETTGLNHRSDEIIEIGAVAFTFNDDGAVGDVVGIYGGLQQPSRPIPPDITRLTGI 134

Query: 66  TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           TD  ++    D PS +++         E     IAHNA FD  F  A
Sbjct: 135 TDVMVEGQTIDMPSLNALI--------EPADLIIAHNAGFDRPFCEA 173


>gi|315636786|ref|ZP_07892012.1| DNA polymerase III epsilon subunit [Arcobacter butzleri JV22]
 gi|315478912|gb|EFU69619.1| DNA polymerase III epsilon subunit [Arcobacter butzleri JV22]
          Length = 272

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 19/157 (12%)

Query: 13  DIETTG-LDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           DIET G    K  +IIE+GAV     E+LD S  +  F        ++  P   ++  IT
Sbjct: 87  DIETNGGTPKKGFQIIELGAVKYKNGEVLD-SFNSLVF-------AKEIPPYIQEVTKIT 138

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+  P    +  +F +F  +    +IAH+ KFD  FI+   ++ +   L  +R + T
Sbjct: 139 PAMLETAPRIEKVLKDFKEFLGDD--VFIAHDIKFDYNFISDSFEKYSLGKL-LNRKLCT 195

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITIS--HRSKHGAL 161
           + +A+R   S +  L+SL +   I I   HR+ + AL
Sbjct: 196 IDLAKRTIKSEKYGLSSLKELLNIDIENHHRAYYDAL 232


>gi|295135069|ref|YP_003585745.1| exonuclease family protein [Zunongwangia profunda SM-A87]
 gi|294983084|gb|ADF53549.1| exonuclease family protein [Zunongwangia profunda SM-A87]
          Length = 457

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 7/148 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG     + I EI A+   D  K    F   + P  R   P  + L GI +E L
Sbjct: 4   ILDIETTGGKYNEEGITEI-AIYKFDGEKVVDQFISLINPE-RPIQPFVVGLTGINNEML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ P F  +     +   +     +AHNAKFD   +  E +R+  +    S  + T+ ++
Sbjct: 62  RNAPKFYEVAKRIVEITTD--CIIVAHNAKFDYRILRTEFKRLGFEFQRKS--LCTVELS 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK 157
           ++  P   +  L  L +  GI +S R +
Sbjct: 118 KKLIPDMPSYSLGKLVRALGIPLSDRHR 145


>gi|150016887|ref|YP_001309141.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903352|gb|ABR34185.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
          Length = 976

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 9/137 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  DIETTGLD     IIEIGAV++ +   T  T+   + P GR           + +  
Sbjct: 13  IYLDIETTGLDETCSEIIEIGAVKVKNGVIT--TYNTLIRPRGRVPISIYSLCSDLKEAD 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L    S +SI  E  +F   ++   I HN  F+  F++  +  I    +D   +   L  
Sbjct: 71  LLSARSLNSIKQEVLEFL--EDLPLICHNGNFERKFLSFYIPEIKNTIMDSMELAIILEP 128

Query: 130 ARRKHPSSRNDLNSLCK 146
            R+++     +LNSL K
Sbjct: 129 WRKEY-----NLNSLIK 140


>gi|294673575|ref|YP_003574191.1| DNA polymerase III subunit epsilon [Prevotella ruminicola 23]
 gi|294472509|gb|ADE81898.1| putative DNA polymerase III, epsilon subunit [Prevotella ruminicola
           23]
          Length = 285

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD+ETTGLD   DRII+I  +++       R  +  L    +   P   +L GI+++ 
Sbjct: 10  VIFDLETTGLDLVKDRIIQISYIKVYPDGHEERGNE--LVNPEKPIEPMITQLTGISNDD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD-PLDPSRIIDTL 127
           +KDKP+F  + +   + F     ++   N+  FD+  +  E  R   D      ++ID  
Sbjct: 68  VKDKPTFKQLGAVLAEKFT--GCDFAGFNSNHFDIPLLAEEFLRAGVDFDFSKCKMIDAQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
           +I    H   R +L +  K Y
Sbjct: 126 TIF---HKMERRNLAAAYKFY 143


>gi|319944252|ref|ZP_08018528.1| exonuclease [Lautropia mirabilis ATCC 51599]
 gi|319742547|gb|EFV94958.1| exonuclease [Lautropia mirabilis ATCC 51599]
          Length = 230

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 13/175 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+ + D II IGA  ++      R     L    R+ SP+++ +H +  + 
Sbjct: 48  VALDCETTGLNVRQDEIIAIGATRIVGRRLMTRERLELLVRPEREVSPDSVAVHRLRAQD 107

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D             F   +    + +  +FDV  I+  L+R     L P R I+  ++
Sbjct: 108 VADGLPLCEAMERLLMFIGSRPL--VGYYLEFDVAMIDRALKRCFGLTL-PQRKIEVSAM 164

Query: 130 A-----RRKHPSSRNDLNSLCKRYG-----ITISHRSKHGALLDSHLLSDVYIKM 174
                 R+  P  ++D   +  R+      + +  R  H AL D+ + +  +I++
Sbjct: 165 YYDWRFRQLPPYQQHDNADIDLRFATILQTLDLPMRDAHDALNDAVMAALAFIRL 219


>gi|314934059|ref|ZP_07841422.1| exonuclease [Staphylococcus caprae C87]
 gi|313653170|gb|EFS16929.1| exonuclease [Staphylococcus caprae C87]
          Length = 184

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 11/167 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   + K   I  +G V++++ ++   +F   + P         + +HGI  E 
Sbjct: 7   VALDFETA--NGKRTSICSVGMVKVIN-NQITESFYTLVNPFDYFTETN-INVHGIRPED 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128
           ++D PSF  ++     F NE     +AHNA FD+  ++  L+ +N +   PS     +  
Sbjct: 63  VEDAPSFEYVYPYMLQFINE--LPVVAHNAAFDMNVLHQSLKSLNIE--TPSMTYFCSYQ 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+R   + R  L  L   Y +       H AL D+   + +  +++
Sbjct: 119 LAKRTIDAYRYGLKHLMNHYQLDF--HGHHDALNDAKACAMITFRLL 163


>gi|88800698|ref|ZP_01116257.1| ribonuclease T [Reinekea sp. MED297]
 gi|88776562|gb|EAR07778.1| ribonuclease T [Reinekea sp. MED297]
          Length = 215

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEAL----- 60
           +V D+ET G ++K D ++EI AV L      + + +      + P    N  +A      
Sbjct: 11  VVIDVETAGFNAKTDALLEIAAVTLKMTDDGWLEQDECLFFNVEPFEGANLEQAALDFTG 70

Query: 61  -----KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114
                 L G  DE    K  F  I  +       + A  + HNA FD  F+ A  +R N 
Sbjct: 71  IDPHNPLRGAVDEGDALKEIFKMI-RKGMKAAGCKRAILVGHNANFDHNFLFAAAERANN 129

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++   +   +  L   C+  G+  S +  H A  D+   ++++  
Sbjct: 130 KRNPFHPFTTFDTAALSALVY--GQTVLKRACQASGVEFSDKEAHNAEYDTRKTAELFCN 187

Query: 174 MM 175
           M+
Sbjct: 188 MI 189


>gi|161507623|ref|YP_001577577.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus DPC 4571]
 gi|160348612|gb|ABX27286.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus DPC 4571]
          Length = 927

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 15/170 (8%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG    K   II+ G   ++   K  +T+   + P+  +     + L GI +E 
Sbjct: 12  VVDLETTGTQREKGHHIIQFGCA-IIKNMKVVKTYSFMINPH-HEIPQSVVNLTGIHNED 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++ K  FS    +  +    +   ++AHN  FD+ F+N EL +   + L  ++ IDT+ +
Sbjct: 70  VQGKDDFSVYAPKIIEIL--KGTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAIDTVEL 126

Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+   P+      +DL +  K     I H + H A  D++  + + IK++
Sbjct: 127 AKIAFPTLPSYKLSDLTAQLK-----IKHLNPHKADSDAYGTAVLLIKII 171


>gi|308179821|ref|YP_003923949.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308045312|gb|ADN97855.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 173

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI +  + D P F  ++     FF +++   IAHNA FD+G +   L         
Sbjct: 45  VQIHGIHEADVADAPKFPDVWQHIEPFF-QRDRLVIAHNAPFDIGVLRNTLAHYGISA-- 101

Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P  + +DT++ ++R +P   N  L+++C+   I + H   H AL DS   +++ +
Sbjct: 102 PEYLSMDTVNTSQRFYPELPNHKLDTVCQALDIDLQHH--HNALDDSLACANILL 154


>gi|259419276|ref|ZP_05743193.1| exodeoxyribonuclease 10 [Silicibacter sp. TrichCH4B]
 gi|259345498|gb|EEW57352.1| exodeoxyribonuclease 10 [Silicibacter sp. TrichCH4B]
          Length = 240

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           V D ETTG  + +N ++IE G V++ LD       F+    P+     P  + +H ITD 
Sbjct: 11  VIDYETTGTQEDENAQVIEFGRVDVDLDTLGIVNPFRALAKPS-EPIPPVTMAVHHITDT 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            + D P    ++  FWD    ++    AHNAKF+  F
Sbjct: 70  DVADAPPPGQVWQPFWDGCRSEDYV-AAHNAKFEQYF 105


>gi|228470614|ref|ZP_04055471.1| exonuclease [Porphyromonas uenonis 60-3]
 gi|228307741|gb|EEK16717.1| exonuclease [Porphyromonas uenonis 60-3]
          Length = 189

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 6/171 (3%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N +  I  D ET     +   I E+G + L+   +   T    + P G + S   ++ HG
Sbjct: 2   NTLDFIAIDFETA--TGQRTSICEVG-ICLVRNGEIAETRSWLVQPEGNRYSYWNMQCHG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I  E  K  PSF+ ++ E  + +  + A  +AHN  FD   +    Q + +  L   +  
Sbjct: 59  IRPEDTKRAPSFAEVWQEIAEQYIGEGALLVAHNVPFDRSCLEQAAQ-LYELTLPELQWD 117

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +L  AR+ +    + L  LC++  ++I     H A  D+ + + +Y++ +
Sbjct: 118 CSLRRARQIYDYGCHTLAYLCEQ--LSIPEGRHHRAGDDAEMCARLYLREL 166


>gi|327194132|gb|EGE61003.1| putative polymerase protein, epsilon subunit [Rhizobium etli
           CNPAF512]
          Length = 326

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 18/117 (15%)

Query: 2   IRKNKMRK--IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKN 55
           +R+++  +  +V D ETTGL+ ++D IIEIGAV     D         ++  L    R  
Sbjct: 65  VRRSEFSRLGVVLDTETTGLNHRSDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPI 124

Query: 56  SPEALKLHGITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
            PE  +L GITD  ++    D  S S++  E  D         IAHNA FD  F  A
Sbjct: 125 PPEVTRLTGITDAMVEGQVIDIRSLSALI-EPADLI-------IAHNAGFDRPFCEA 173


>gi|127513296|ref|YP_001094493.1| exonuclease, RNase T and DNA polymerase III [Shewanella loihica
           PV-4]
 gi|126638591|gb|ABO24234.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica
           PV-4]
          Length = 226

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 82/185 (44%), Gaps = 27/185 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +  D+E TGL++  D+I+ IG V     +L+     ++  Q+        +  ++  +HG
Sbjct: 44  LAIDLEMTGLNASFDQILSIGVVPIRQGQLILSEAQHKLVQI------EGSVGQSATIHG 97

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI- 123
           I D  L    +     +  W     +    +AH+A  D+ F+ + LQ    +   P  + 
Sbjct: 98  ILDTHLDAALTPEQAMA--WFLSVSEGMVLVAHHAPLDLAFLQSGLQACLGE--KPRLLA 153

Query: 124 IDTLSIARRKHPSSRNDLNSLC-------KRYGITISHRSKHGALLDSHLLSDVYIKMM- 175
           IDTL + +++    +  L   C        RYG+ +   + H AL+D+    ++ +  + 
Sbjct: 154 IDTLLLEKQRLLRQQEHLQEGCLRLGRSRARYGLPV--YAAHNALIDALACGELLLAQVA 211

Query: 176 -VGGS 179
            +GG+
Sbjct: 212 AMGGA 216


>gi|255021102|ref|ZP_05293155.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
 gi|254969516|gb|EET27025.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
          Length = 475

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 9/158 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+E TG   + DRIIE+G + L+  +     +   + P  R  SP    L GI    L 
Sbjct: 12  IDLENTGGHLERDRIIEVGII-LVAPAGEPEVWSTLINPEIRL-SPAISTLTGIDPADLA 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P+F+ +     +    +    IAH+A+ D+ F+  E +R+ +  +  + ++ TL ++R
Sbjct: 70  HAPTFAQVAEPLREKLAGRLL--IAHDARTDLAFLRQEWRRLGQ--VFTADVLCTLRLSR 125

Query: 132 RKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
              P   R+ L+++ +R  + +    +H AL D+  ++
Sbjct: 126 SLFPDEKRHGLDAIIER--LQLHSAGRHRALTDARTVA 161


>gi|163789521|ref|ZP_02183959.1| exonuclease [Carnobacterium sp. AT7]
 gi|159875053|gb|EDP69119.1| exonuclease [Carnobacterium sp. AT7]
          Length = 177

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 5/116 (4%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGIT+  +KD PSF  ++ +   FF E N   +AHN  FD G +   L   +  P  
Sbjct: 50  VQVHGITENDVKDAPSFPEVWEQIKPFFTE-NKLIVAHNLPFDRGVLQGCLDYYDL-PQP 107

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + + T+  +R+      N  LN++C    I++  ++ H AL DS+  + + + +
Sbjct: 108 HFQTLCTVQSSRKLITEIPNHKLNTVCDHLNISL--KNHHNALEDSNACAAILLYL 161


>gi|194333877|ref|YP_002015737.1| Exonuclease RNase T and DNA polymerase III [Prosthecochloris
           aestuarii DSM 271]
 gi|194311695|gb|ACF46090.1| Exonuclease RNase T and DNA polymerase III [Prosthecochloris
           aestuarii DSM 271]
          Length = 189

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 25/191 (13%)

Query: 5   NKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N+ +K+++ D+ETTG +     II+IGA+  +D               G + SP+AL + 
Sbjct: 2   NQHKKVLYCDVETTGTNPAKHGIIQIGAIIEVDGVVVEECNLKCAPHEGAEISPDALAIS 61

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--------IAHNAKFDVGFINAELQR--- 112
           G     L+ + +    +++F  F +    ++          +N  FD+ FI A  +    
Sbjct: 62  GTERSELESRMTSHEAYTQFRHFLSRHIEQYDREDKCYPAGYNIHFDLNFIQAWFRHHGD 121

Query: 113 -------INKDPLDPSRIIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
                  IN   LDP  ++      R+   P  R  L ++C+ +GI +     H A+ D 
Sbjct: 122 KYGIGSFINWRMLDPLPLLFIKDFTRQITLPDYR--LETVCRHFGIAL---HAHDAMSDI 176

Query: 165 HLLSDVYIKMM 175
               ++ +K++
Sbjct: 177 RATRELLLKLL 187


>gi|300767630|ref|ZP_07077540.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300494615|gb|EFK29773.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 182

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI +  + D P F  ++     FF +++   IAHNA FD+G +   L         
Sbjct: 54  VQIHGIHEADVADAPKFPDVWQHIAPFF-QRDRLVIAHNAPFDIGVLRNTLAHYGISA-- 110

Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P  + +DT+  ++R +P   N  L+++C+   I + H   H AL DS   +++ +
Sbjct: 111 PEYLSMDTVKTSQRFYPELPNHKLDTVCQALDIDLQHH--HNALDDSLACANILL 163


>gi|291529682|emb|CBK95268.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Eubacterium rectale M104/1]
          Length = 269

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 13/98 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVE-------LLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +  +ETTGLD  +D +I I A++       L++  + NR  +     N +  +PE  K+ 
Sbjct: 30  ILSVETTGLDKFSDELINIHALKCHFEDKILIEDEEYNRYIR-----NTKALTPELEKIT 84

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
            IT+EFL DK   S++  +F+++  E +A  I  N  F
Sbjct: 85  KITNEFLMDKEDLSTVMEDFYNYIGE-DANIIGFNTSF 121


>gi|238569519|ref|XP_002386676.1| hypothetical protein MPER_14994 [Moniliophthora perniciosa FA553]
 gi|215439222|gb|EEB87606.1| hypothetical protein MPER_14994 [Moniliophthora perniciosa FA553]
          Length = 172

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 7/108 (6%)

Query: 46  VFLCPNGRKNSPEALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDV 103
           ++L P G  + P AL+LHGI D E +   P+FS+   +   F     +    +N  KFD+
Sbjct: 11  IYLNPEGIPSHPMALQLHGIQDAELVAPLPTFSAHAEQLRSFL--AGSIMTGYNITKFDL 68

Query: 104 GFINAELQR--INKDPLDPS-RIIDTLSIARRKHPSSRNDLNSLCKRY 148
            F+ AE  R  I   P       IDTL++ RR  P        L   Y
Sbjct: 69  AFLTAEFHRCGITWSPAGEGIGTIDTLALYRRFRPQEYKRGGKLFSAY 116


>gi|188533646|ref|YP_001907443.1| exodeoxyribonuclease X [Erwinia tasmaniensis Et1/99]
 gi|188028688|emb|CAO96550.1| DNA exonuclease X [Erwinia tasmaniensis Et1/99]
          Length = 221

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+E+ +V++++    N      + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGLQGG---IVEVASVDVINGQIAN-PMSDLISPD-RPISRQAMDVHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP+       +       +  ++AHNA FD       L  +N +       I T+++A
Sbjct: 59  RGKPTIEQAIGRY-----HGSPYYVAHNASFD----RRMLPEMNGE------WICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSK---HGALLDSHLLSDVYIKMM 175
           RR  P  +    +L +   + +S   +   H AL D ++ + + +++M
Sbjct: 104 RRLWPGLKYGNEALRQALRLDVSPPPELHAHRALYDCYVTAALLVRIM 151


>gi|120435022|ref|YP_860708.1| exonuclease family protein [Gramella forsetii KT0803]
 gi|117577172|emb|CAL65641.1| exonuclease family protein [Gramella forsetii KT0803]
          Length = 457

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 7/151 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG     + I EI A+   D  K    F   + P  +   P  + L GI ++ L
Sbjct: 4   ILDIETTGGKYNEEGITEI-AIYKFDGQKVVDQFISLVNPE-QPIQPFVVNLTGINNDML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K+ P F  +     +    ++   +AHNAKFD   +  E +R+  +    S  + T+ ++
Sbjct: 62  KNAPKFYEVAKRIVEI--TEDCILVAHNAKFDYRILRTEFRRLGFEYERKS--LCTVELS 117

Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           ++  P      L  L +  GI +S R +   
Sbjct: 118 KKLIPGLPSYSLGKLVRSLGIPLSDRHRAAG 148


>gi|114319997|ref|YP_741680.1| DNA polymerase III subunit epsilon [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226391|gb|ABI56190.1| Exonuclease, RNase T and DNA polymerase III [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 240

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 9/128 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  D+ETTGLD     I+ IG V  +L      +R   +   P  R    E++ LHGIT 
Sbjct: 51  VALDMETTGLDPDRHAIVSIGLVPFDLQRIRLPDRRHWLLQPP--RPLLSESITLHGITH 108

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDT 126
             L + P  S +  E  +    +    + H    +  F++  ++ R+ +  L P  +IDT
Sbjct: 109 SDLANAPDLSEVLDELLEALAGRQP--VVHYRNIERPFLDTAVRARVGEGLLFP--VIDT 164

Query: 127 LSIARRKH 134
           + +  R+H
Sbjct: 165 MELEARRH 172


>gi|319757677|gb|ADV69619.1| Rad3-related DNA helicase [Streptococcus suis JS14]
          Length = 837

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 22/169 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61
           R  V D+E TG  + + +II+IG V     E++D Y+     ++  L  +  KN      
Sbjct: 27  RYAVVDLEATGTGT-DAKIIQIGIVLVENGEIIDSYATDINPYE--LLDDHIKN------ 77

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L   P F  + S  +D     +A ++AHN KFD   +   L     + L P 
Sbjct: 78  LTGITDQQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTPR 135

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCK--RYGITISHRSKHGALLDSHLL 167
             +DT+ +++   P+  +  L +L +    G+  +H +   A+  + LL
Sbjct: 136 --VDTVELSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISDAMATARLL 182


>gi|326774035|ref|ZP_08233317.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
 gi|326636174|gb|EGE37078.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
          Length = 259

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 82/214 (38%), Gaps = 39/214 (18%)

Query: 12  FDIETTGLDSKNDRIIEIG----AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           FD ETTG+D   DR++       A    D  +  ++   +L   G +    A  +HG+T 
Sbjct: 27  FDTETTGVDPSGDRLVTAALVWRAAPRADGVR-PQSVATWLADPGVEIPEAAAAVHGVTT 85

Query: 68  EFLK-DKPSFSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRIN--------- 114
           E  + +  S + + +E  +      A     +A NA +D+  + AEL R           
Sbjct: 86  ERARAEGRSVTEVLAEVSEHLVAAMAAGTPVVAFNASYDLTLMEAELARHGLPTMHSRLG 145

Query: 115 ------KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                  DPL   R +D     +R+       L  LC+ YG+ +   + H A +D     
Sbjct: 146 RELGPIADPLVLDRAVDRYRRGKRR-------LGDLCEVYGVRVDE-ALHTAEVDVAATL 197

Query: 169 DVYIKMMVGGSQIN-------FGFKTNEDRFFKE 195
           DV   +     Q++         F+    R + E
Sbjct: 198 DVLEALTAAHPQLSELDPDELVAFQARAHRTWAE 231


>gi|146318210|ref|YP_001197922.1| Rad3-related DNA helicase [Streptococcus suis 05ZYH33]
 gi|146320404|ref|YP_001200115.1| Rad3-related DNA helicase [Streptococcus suis 98HAH33]
 gi|145689016|gb|ABP89522.1| Rad3-related DNA helicase [Streptococcus suis 05ZYH33]
 gi|145691210|gb|ABP91715.1| Rad3-related DNA helicase [Streptococcus suis 98HAH33]
 gi|292558009|gb|ADE31010.1| DnaQ exonuclease [Streptococcus suis GZ1]
          Length = 837

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 22/169 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61
           R  V D+E TG  + + +II+IG V     E++D Y+     ++  L  +  KN      
Sbjct: 27  RYAVVDLEATGTGT-DAKIIQIGIVLVENGEIIDSYATDINPYE--LLDDHIKN------ 77

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L   P F  + S  +D     +A ++AHN KFD   +   L     + L P 
Sbjct: 78  LTGITDQQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTPR 135

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCK--RYGITISHRSKHGALLDSHLL 167
             +DT+ +++   P+  +  L +L +    G+  +H +   A+  + LL
Sbjct: 136 --VDTVELSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISDAMATARLL 182


>gi|153817923|ref|ZP_01970590.1| Gp39 [Vibrio cholerae NCTC 8457]
 gi|126511550|gb|EAZ74144.1| Gp39 [Vibrio cholerae NCTC 8457]
          Length = 184

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I+ D ETTGLDS + RI+E+  ++     K   +    LC      SPE   +HGIT++
Sbjct: 9   AIILDTETTGLDS-DARIVEVSIIDAQTGIKLYSSLVNPLC----SISPEVTAIHGITND 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
            + D P+F  ++++   + ++  A    +N  FD
Sbjct: 64  MVIDMPTFDKVWNDIKGYLSD--AVIYVYNLDFD 95


>gi|325293446|ref|YP_004279310.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3]
 gi|325061299|gb|ADY64990.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3]
          Length = 202

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 7/149 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      IG   + D  +  R  +  + P   + SP  + +HGI 
Sbjct: 1   MKTIAIDFETA--NEERGSACSIGLAWIED-GEIVRVEERLIRPKDMRFSPFNIAVHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P F  +  EF D F+   A  IAHNA FD   + A   +  +   D S +  +
Sbjct: 58  PADVEDAPEFPDVMEEFIDDFH--GATMIAHNAAFDFSVMRASFDKYRQSYPDLSYLC-S 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISH 154
           + IAR   P  + + LN +     +   H
Sbjct: 115 VKIARHVWPQLASHKLNVIAHHLQLRFVH 143


>gi|238789017|ref|ZP_04632806.1| Exodeoxyribonuclease 10 [Yersinia frederiksenii ATCC 33641]
 gi|238722781|gb|EEQ14432.1| Exodeoxyribonuclease 10 [Yersinia frederiksenii ATCC 33641]
          Length = 219

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 27/170 (15%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL+     I+EI +++++D   +N      + P+ R  S +A+ +H IT++ +
Sbjct: 5   VIDTETCGLEGG---IVEIASIDVVDGVLSN-PMSDLVSPD-RPISIDAMVIHHITEDMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP  +    ++     + +  ++AHNA FD G +          P    + I TL +A
Sbjct: 60  EGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICTLKLA 104

Query: 131 RRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175
           R  +P  ++    L  RY + ++     +   H AL D ++ + +  ++M
Sbjct: 105 RMLYPDIKHSNQYL--RYALRLNVSVPDNLYPHRALYDCYVTAALLQRIM 152


>gi|253751390|ref|YP_003024531.1| ATP-dependent DNA helicase [Streptococcus suis SC84]
 gi|253753291|ref|YP_003026431.1| ATP-dependent DNA helicase [Streptococcus suis P1/7]
 gi|253755878|ref|YP_003029018.1| ATP-dependent DNA helicase [Streptococcus suis BM407]
 gi|251815679|emb|CAZ51270.1| putative ATP-dependent DNA helicase [Streptococcus suis SC84]
 gi|251818342|emb|CAZ56163.1| putative ATP-dependent DNA helicase [Streptococcus suis BM407]
 gi|251819536|emb|CAR45129.1| putative ATP-dependent DNA helicase [Streptococcus suis P1/7]
          Length = 822

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 22/169 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61
           R  V D+E TG  + + +II+IG V     E++D Y+     ++  L  +  KN      
Sbjct: 12  RYAVVDLEATGTGT-DAKIIQIGIVLVENGEIIDSYATDINPYE--LLDDHIKN------ 62

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L   P F  + S  +D     +A ++AHN KFD   +   L     + L P 
Sbjct: 63  LTGITDQQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTPR 120

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCK--RYGITISHRSKHGALLDSHLL 167
             +DT+ +++   P+  +  L +L +    G+  +H +   A+  + LL
Sbjct: 121 --VDTVELSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISDAMATARLL 167


>gi|187734853|ref|YP_001876965.1| Exonuclease RNase T and DNA polymerase III [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187424905|gb|ACD04184.1| Exonuclease RNase T and DNA polymerase III [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 197

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A ++HGIT E L D PSF S++ E      +  A  + HN   +  F    L+R      
Sbjct: 63  ASQVHGITTEMLADAPSFPSLWPEIRSRLGQ--AVVVGHNPATERKF----LRRFPGHGF 116

Query: 119 DPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITIS------HRSKHGALLDSHLLSDVY 171
            P   +DTL++ R   P   +  L+SLC   G+T S       R  H AL D+ L S + 
Sbjct: 117 GP--WLDTLALGRMCVPGLADYSLSSLCGALGLTCSVEALLPARRWHDALYDA-LASLLI 173

Query: 172 IKMMV 176
           ++ +V
Sbjct: 174 VRFLV 178


>gi|302023531|ref|ZP_07248742.1| ATP-dependent DNA helicase [Streptococcus suis 05HAS68]
          Length = 822

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 22/169 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61
           R  V D+E TG  + + +II+IG V     E++D Y+     ++  L  +  KN      
Sbjct: 12  RYAVVDLEATGTGT-DAKIIQIGIVLVENGEIIDSYATDINPYE--LLDDHIKN------ 62

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L   P F  + S  +D     +A ++AHN KFD   +   L     + L P 
Sbjct: 63  LTGITDQQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTPR 120

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCK--RYGITISHRSKHGALLDSHLL 167
             +DT+ +++   P+  +  L +L +    G+  +H +   A+  + LL
Sbjct: 121 --VDTVELSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISDAMATARLL 167


>gi|126661817|ref|ZP_01732816.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
 gi|126625196|gb|EAZ95885.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
          Length = 453

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG     + I EI A+   D  +    F   + P  +   P  +KL GI +  L
Sbjct: 4   IIDIETTGGQFNEEGITEI-AIYKFDGHEVVDQFISLVNPE-KPIQPFVVKLTGINNAML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  +     +    +    +AHNA FD   +  E +R+  D     + + T+ ++
Sbjct: 62  RSAPKFYEVAKRIIEI--TEGCVIVAHNASFDYRILKTEFRRLGYD--FKKQTLCTVELS 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIK 173
           ++  P   +  L  L +  GI ++  HR+   AL    L   + +K
Sbjct: 118 KKLIPEQPSYSLGKLVRALGIPMADRHRANGDALATVKLFKMLLVK 163


>gi|315126562|ref|YP_004068565.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
 gi|315015076|gb|ADT68414.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
          Length = 233

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 11/127 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +  D ETTGLD+ +D I+ +G V       Y K +R + V      R  S E++ +HGIT
Sbjct: 45  VALDFETTGLDANSDDIVSVGLVPFNVNRIYCKESRHWVV---QPRRDLSEESIVIHGIT 101

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIID 125
              + + P  + I +   D    +    + H A  +  F  NA L RI K+ ++ + ++D
Sbjct: 102 HSEVDEAPDLNRILAPLLDALKGKVV--VVHYAAIERHFFYNALLMRI-KEGIEFA-LVD 157

Query: 126 TLSIARR 132
           T+ I RR
Sbjct: 158 TMEIERR 164


>gi|282859398|ref|ZP_06268505.1| exonuclease [Prevotella bivia JCVIHMP010]
 gi|282587832|gb|EFB93030.1| exonuclease [Prevotella bivia JCVIHMP010]
          Length = 287

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+FD+ETTGLD  NDRII+I  ++     +  R   +F+ P  ++   E + L GIT+  
Sbjct: 10  IIFDLETTGLDLVNDRIIQISYIKAYPDGREERE-NIFINPE-KQIPEEVIALTGITNAD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127
           + + P+F     E    F     ++   N+ +FDV  +  E  R   +      ++ID  
Sbjct: 68  VAEAPTFKEKGKELAQKF--AGCDFAGFNSNRFDVPMLAEEFLRAGVEFDFSKCKLIDAQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
           +I    H   R +L +  + Y
Sbjct: 126 NIF---HKMERRNLAAAYEFY 143


>gi|322385196|ref|ZP_08058843.1| DNA polymerase III [Streptococcus cristatus ATCC 51100]
 gi|321270820|gb|EFX53733.1| DNA polymerase III [Streptococcus cristatus ATCC 51100]
          Length = 814

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 7/115 (6%)

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+ D+ L+  P FS +  E ++    ++A ++AHN KFD   +   L     D L P
Sbjct: 57  QLTGLDDQRLRQAPDFSQVAREVYELI--EDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +LC+   I +   + H AL D+   + +++K+
Sbjct: 115 R--VDTVELAQVFYPTFDKYALGNLCELLEIPL--ENAHTALADAQATAQLFLKI 165


>gi|227538997|ref|ZP_03969046.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241200|gb|EEI91215.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 203

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 12/166 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I F++ T   +S    +  +G V + D       F   + P   +   +  ++HGI  + 
Sbjct: 9   IDFELATAAYNS----VCSVGIVRV-DQGVITDEFYSLVKPPKNEYMWQTTRVHGIKPKD 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDPSRIIDTL 127
             D P+F  I+ +  D    QN + +AHN KFD   ++  ++    D   L    + +  
Sbjct: 64  TADAPTFEEIYPKIKDLL--QNKKMVAHNEKFDREVLSKTMKACGLDYRELHLPVMWECT 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           S   R     +  LN  C+  GI ++H   H AL D+   + +Y+K
Sbjct: 122 SKIYRDKGFKKTKLNLCCEIMGIDLNH---HEALSDAKAAAFLYLK 164


>gi|330832545|ref|YP_004401370.1| Rad3-related DNA helicase [Streptococcus suis ST3]
 gi|329306768|gb|AEB81184.1| Rad3-related DNA helicase [Streptococcus suis ST3]
          Length = 837

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 22/169 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61
           R  V D+E TG  + + +II+IG V     E++D Y+     ++  L  +  KN      
Sbjct: 27  RYAVVDLEATGTGT-DAKIIQIGIVLVENGEIIDSYATDINPYE--LLDDHIKN------ 77

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L   P F  + S  +D     +A ++AHN KFD   +   L     + L P 
Sbjct: 78  LTGITDQQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTPR 135

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCK--RYGITISHRSKHGALLDSHLL 167
             +DT+ +++   P+  +  L +L +    G+  +H +   A+  + LL
Sbjct: 136 --VDTVELSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISDAMATARLL 182


>gi|146284212|ref|YP_001174365.1| exonuclease [Pseudomonas stutzeri A1501]
 gi|145572417|gb|ABP81523.1| exonuclease [Pseudomonas stutzeri A1501]
 gi|327482571|gb|AEA85881.1| exonuclease [Pseudomonas stutzeri DSM 4166]
          Length = 235

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 17/177 (9%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + R +V D+ETTGL  K D +I IGAV +    +DYS+    F+  LC   + N  E++ 
Sbjct: 37  QQRLVVLDLETTGLHLKRDLVIAIGAVVIEDGAIDYSQ---QFECTLCRQVKVN--ESVL 91

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI    L +    +     F +F     +  +A +A FD   +   L+      L+ S
Sbjct: 92  IHGIAPSELANGLPPAEALLSFMEF--AAGSIVLAFHAPFDQRMLGRALKNELGYSLENS 149

Query: 122 RIIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +D   +A    P +   R  L+     + I I  R  H A  D+   +++ + ++
Sbjct: 150 -FLDVADLAPMLFPEAMIHRGSLDHWLDYFNIHIPQR--HNASADAMATAEIALILL 203


>gi|303236025|ref|ZP_07322628.1| exonuclease [Prevotella disiens FB035-09AN]
 gi|302483898|gb|EFL46890.1| exonuclease [Prevotella disiens FB035-09AN]
          Length = 284

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGLD   DRII+I  +++       R   +++ P  ++   E ++L GI+D  
Sbjct: 10  IVFDLETTGLDLVKDRIIQISYIKVSPNGDEERE-NLYINPE-KEIPKEVVELTGISDAD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127
           +   P+F     E  D F     ++   N+ +FDV  +  E  R   D      R+ID  
Sbjct: 68  VASAPTFKQKAKELADKF--IGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFSKCRLIDAQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
           +I    H   R +L +  + Y
Sbjct: 126 NIF---HKMERRNLAAAYEFY 143


>gi|28899929|ref|NP_799584.1| putative DNA polymerase III, epsilon subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260363223|ref|ZP_05776092.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|260880510|ref|ZP_05892865.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260898537|ref|ZP_05907033.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|28808212|dbj|BAC61417.1| putative DNA polymerase III, epsilon subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308085005|gb|EFO34700.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308092696|gb|EFO42391.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308112379|gb|EFO49919.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
          Length = 236

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 12/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTG+D++ D+I+ IG V+L LD      + + ++C +G+   PE  K++G+T +
Sbjct: 53  VALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYIC-HGQFIKPETAKINGLTPQ 111

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L          +        +    +AH    +  FI+A      +    P+  IDTL 
Sbjct: 112 DLAKGLPLDEGMNRLLKRITGKVV--LAHGCCIEKAFIHAYFSSRYQVEDFPAYFIDTLQ 169

Query: 129 I------ARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLL 167
           I      A +    S   L+ L + Y +   +SH +   AL  + L 
Sbjct: 170 IEKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAELF 216


>gi|237755791|ref|ZP_04584393.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692054|gb|EEP61060.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 203

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 13/172 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD ETTGL+ K D I+ I AV++ D     N  F V + P+ R+   +A+K+HG+  +
Sbjct: 35  VAFDTETTGLNPKVDDILSIAAVKIKDNKILLNERFNVIVRPD-REIIEDAIKIHGLRKK 93

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+           F  F   +    + +  +FDV  +N   ++++   L P++ I+  +
Sbjct: 94  DLESGIPIEEAVDRFAHFIGSR--PLVGYYLEFDVAMVNKYFKKLSGTTL-PNKQIEVSA 150

Query: 129 IARRKH----PSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +         P    DL  +S+ K   + I    KH AL D+ + + +++K+
Sbjct: 151 LYYDFKIGLIPQGFVDLRFDSILK--DLDIPTFGKHDALNDAIMTALIFLKL 200


>gi|238854851|ref|ZP_04645181.1| DNA polymerase III alpha chain [Lactobacillus jensenii 269-3]
 gi|260664138|ref|ZP_05864991.1| DNA polymerase subunit III alpha [Lactobacillus jensenii SJ-7A-US]
 gi|282933929|ref|ZP_06339277.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
 gi|313472352|ref|ZP_07812844.1| exonuclease [Lactobacillus jensenii 1153]
 gi|238832641|gb|EEQ24948.1| DNA polymerase III alpha chain [Lactobacillus jensenii 269-3]
 gi|239529790|gb|EEQ68791.1| exonuclease [Lactobacillus jensenii 1153]
 gi|260562024|gb|EEX27993.1| DNA polymerase subunit III alpha [Lactobacillus jensenii SJ-7A-US]
 gi|281302018|gb|EFA94272.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
          Length = 177

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 7/116 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +H IT   +KD P+ + ++ +  D + +      AHNAKFD   +   L R   D  +
Sbjct: 50  ISVHQITPSDVKDAPTMAEVWPKIKDLY-QPGMLVAAHNAKFDANVLKMSLARY--DIAE 106

Query: 120 PSR-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           P   +IDTL  +R   P   N  LN++ +   + + H   H AL DS   + + IK
Sbjct: 107 PHYLVIDTLKTSRLFEPDLPNHKLNTVSEALDVELWHH--HNALSDSEACAGILIK 160


>gi|262193953|ref|YP_003265162.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077300|gb|ACY13269.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 11/152 (7%)

Query: 7   MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNS-PEALKLH 63
           M+ +VF D ETTGLD +   I+EI A+ +   + +  R   + + P   +++ PEAL+++
Sbjct: 1   MQPLVFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERALVLRVRPERLEDADPEALEVN 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPS 121
           G       D  S     SE       + A    HN  FD  F+ A    +   P  LD  
Sbjct: 61  GYRRRAWADAVSLGDAMSELAPML--EGAVLAGHNVAFDRSFLEAAWDYVGHRPENLD-H 117

Query: 122 RIIDTLSIARRKHPSSRND---LNSLCKRYGI 150
             +DT ++A     +   D   L  +C   G+
Sbjct: 118 HALDTATLAFPLLMAGEIDSLSLTPVCAHLGV 149


>gi|123968212|ref|YP_001009070.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. AS9601]
 gi|123198322|gb|ABM69963.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. AS9601]
          Length = 259

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 23/219 (10%)

Query: 3   RKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEAL 60
           +  K+ KI + D ETTGLD   D +IEIG + L D S      QV FL P    N+ EA 
Sbjct: 31  KNKKIEKILILDTETTGLDENKDEVIEIGCI-LFDVSFKCVLSQVSFLFP---VNNNEAE 86

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLD 119
            ++GI+ E       +    + F    +  +   +AHN +FD   F    L ++NK  + 
Sbjct: 87  HVNGISAEVTNISQPWEDGLNFFLKLVDSSDFI-VAHNVEFDKKWFGKGRLPKLNKKWIC 145

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------ 173
               ++ ++ + +K   +R  +  L   + I + +   H AL D   LS+V+ K      
Sbjct: 146 S---LEDINWSFQKSLKTRPSVTDLALSFSIPVWNL--HRALSDCFYLSEVFKKCDNLEE 200

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
           +++  ++  F +K         E +++P  +  K + P+
Sbjct: 201 LLLKATEPRFLYKA----LVSYEDRSLPKNAGFKWNSPV 235


>gi|270261380|ref|ZP_06189653.1| exodeoxyribonuclease X [Serratia odorifera 4Rx13]
 gi|270044864|gb|EFA17955.1| exodeoxyribonuclease X [Serratia odorifera 4Rx13]
          Length = 222

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 23/163 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GLD     ++E+ +V+L+D    N      + P+ R  S +A+ +H IT++ +
Sbjct: 5   VIDTETCGLDGG---VVEVASVDLIDDHIAN-PMSDLVSPD-RPISIDAMAIHHITEQMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP  +     +       +  ++AHNA FD G +          P      I T+ +A
Sbjct: 60  EGKPRIAVAIGRYLG-----SPYYVAHNAAFDRGVL----------PEMRGAWICTMKLA 104

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH-LLSDVYI 172
           R  +P  +     L  RY + +  +      L  H  L D Y+
Sbjct: 105 RTLYPDIKYGNQYL--RYALNLEVQLPQDTTLYPHRALYDCYV 145


>gi|257467741|ref|ZP_05631837.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium ulcerans
           ATCC 49185]
 gi|317062034|ref|ZP_07926519.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
 gi|313687710|gb|EFS24545.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
          Length = 186

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 23/188 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGI 65
           M+ +  D ET G+  ++  I   G V++    +    F  ++ P  G + + EALK+ G 
Sbjct: 1   MKILFVDTETGGITERSALIQLSGIVQI--GKEVAEEFNFYIKPFPGSEVTDEALKIQGR 58

Query: 66  TDEFLKDKPSFSSIFSEFW-------DFFNEQNAEWIA-HNAKFDVGFINAELQR----- 112
           T E ++   S   +F +F        D +N+++   +  +N +FD+  IN  L+R     
Sbjct: 59  TREEVETYDSEEEVFIKFMKILNKHIDKYNKEDKFLVGGYNVRFDIDVINRFLKRNGEKY 118

Query: 113 ----INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
               I    LDP + I  L + ++      N L + C  +GI +     H +L D     
Sbjct: 119 LFSYIQATTLDPLQWIAALQLLKKIPVLKDNKLETWCNHFGIEL---KAHDSLEDIKATK 175

Query: 169 DVYIKMMV 176
            +  KMM+
Sbjct: 176 ALTKKMML 183


>gi|221632364|ref|YP_002521585.1| exonuclease family [Thermomicrobium roseum DSM 5159]
 gi|221156848|gb|ACM05975.1| exonuclease family [Thermomicrobium roseum DSM 5159]
          Length = 982

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 15/167 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +  DIE TG+D + D IIE+ A++  +     R F+  + P  R+  P A+  L G+T  
Sbjct: 6   VALDIEATGMDPERDEIIEVAAIKFREEEVLER-FETLVQP--RRPVPLAVASLTGLTMR 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  PSF  I      F   +N   +  +  +D+  ++A    + ++P     + DT  
Sbjct: 63  DLRRAPSFQQIAPRLRQFV--RNYPIVGQSPDYDLQMLSAHGLEL-RNP-----VYDTFR 114

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +A    P      L  +  R GI+++   +H A+ D      V++ +
Sbjct: 115 LATILLPDLPAYSLAGIAARLGISVAQ--QHRAMADVETTMAVFLGL 159


>gi|28377661|ref|NP_784553.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum WCFS1]
 gi|254555842|ref|YP_003062259.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum JDM1]
 gi|28270494|emb|CAD63396.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum WCFS1]
 gi|254044769|gb|ACT61562.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum JDM1]
          Length = 173

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI +  + D P F  ++     FF +++   IAHNA FD+G +   L         
Sbjct: 45  VQIHGIHEADVADAPKFPDVWQHIEPFF-QRDRLVIAHNAPFDIGVLRNTLAHYGISA-- 101

Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P  + +DT+  ++R +P   N  L+++C+   I + H   H AL DS   +++ +
Sbjct: 102 PEYLSMDTVKTSQRFYPELPNHKLDTVCQALDIDLQHH--HNALDDSLACANILL 154


>gi|330718588|ref|ZP_08313188.1| Rad3-related DNA helicase [Leuconostoc fallax KCTC 3537]
          Length = 798

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 11/168 (6%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D+ETTG    +  RII+IG +  +   K    F+ F+ P G+    +  +L  I+  
Sbjct: 12  VVVDLETTGQSVDRGGRIIQIG-MTFIKKRKIVDHFETFVNP-GQLIDRQIQQLTHISQN 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127
            ++  P F  I          +++  IAHN  FD  ++N E +R    PLD P+  IDT+
Sbjct: 70  EVQHAPYFEEIAPVIHTLL--KDSVIIAHNVNFDYPYLNEEFERAGLSPLDIPA--IDTV 125

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +++   P++    L  L +   I +S  + H A  D+H  +++++ +
Sbjct: 126 MLSQILLPTAPGYRLVDLTQYLDIKLS--NAHRANEDAHATAELFLSL 171


>gi|313123658|ref|YP_004033917.1| ATP-dependent DNA helicase ding [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280221|gb|ADQ60940.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 929

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 15/170 (8%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTG    + DRII+ G   + D  +  +T+   + P+ RK       L GI  + 
Sbjct: 11  VVDLETTGTRKEEGDRIIQFGCAIVKD-GEVVKTYSFMMNPH-RKIPLAVTNLTGIDQKM 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +  F     +  +    Q+  ++AHN  FD  F+N EL     + L   + +DT+ +
Sbjct: 69  VAGQADFKHYAPKIREIL--QDKVFVAHNVNFDFPFLNYELTNAGFEALT-CKAVDTVEL 125

Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+   P+       DL +      + I H + H A  D++  + + +K++
Sbjct: 126 AKIAFPTLPSYKLRDLTA-----SLEIKHANPHKADSDAYGTAVLLLKII 170


>gi|46205666|ref|ZP_00048224.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 187

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 15/149 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTGLD   DR++   A+ L +   T+   + +L   G +   EA  +HGIT+    
Sbjct: 14  LDTETTGLDVDVDRVVT-AALVLREPGATH--VRTWLLDPGVEIPAEATGIHGITNAHAT 70

Query: 72  DKPSFSSI-FSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRINKDPLD-----PSR 122
              S  ++   E               +A+NA FD+  ++ EL R     L      P R
Sbjct: 71  AHGSAPAVALDEIATLVVDAQRDGVPLVAYNAAFDLAILDTELVRHGLPTLAARLGRPVR 130

Query: 123 -IIDTLSIARRKHPS--SRNDLNSLCKRY 148
            ++D L + R   P+   +  L  LC RY
Sbjct: 131 PVLDPLVLDRAWDPARDGKRRLVDLCARY 159


>gi|27468497|ref|NP_765134.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus
           epidermidis ATCC 12228]
 gi|57867358|ref|YP_189001.1| exonuclease [Staphylococcus epidermidis RP62A]
 gi|251809901|ref|ZP_04824374.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282874556|ref|ZP_06283441.1| exonuclease [Staphylococcus epidermidis SK135]
 gi|293367792|ref|ZP_06614441.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27316044|gb|AAO05178.1|AE016749_124 DNA polymerase III, alpha chain PolC-type [Staphylococcus
           epidermidis ATCC 12228]
 gi|57638016|gb|AAW54804.1| exonuclease [Staphylococcus epidermidis RP62A]
 gi|251806566|gb|EES59223.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281296695|gb|EFA89204.1| exonuclease [Staphylococcus epidermidis SK135]
 gi|291318131|gb|EFE58528.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726906|gb|EGG63364.1| exonuclease [Staphylococcus epidermidis VCU144]
 gi|329734711|gb|EGG71017.1| exonuclease [Staphylococcus epidermidis VCU045]
 gi|329734804|gb|EGG71109.1| exonuclease [Staphylococcus epidermidis VCU028]
          Length = 184

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 11/156 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   +SK   I  +G V+++D ++   +F   + P         + +HGI  E 
Sbjct: 7   VALDFETA--NSKRTSICSVGMVKVID-NQITESFHTLVNPFDYFTETN-ITVHGIHPED 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTLS 128
           ++D P F  ++     F ++     +AHNA FD+  ++  L+  N D   PS     +  
Sbjct: 63  VQDAPGFKHVYPYMLKFIDQ--LPVVAHNAAFDMNVLHQSLKSHNIDT--PSLTYFCSYQ 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +A+R   + R  L  L   Y +       H AL D+
Sbjct: 119 LAKRTINAYRYGLKHLMNHYHLDF--HGHHDALNDA 152


>gi|304411957|ref|ZP_07393568.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS183]
 gi|307303275|ref|ZP_07583030.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           BA175]
 gi|304349817|gb|EFM14224.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS183]
 gi|306913635|gb|EFN44057.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           BA175]
          Length = 228

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 29/186 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +  D+E TGL+ + D+I+ IG V     E+       +  Q+      R +  ++  +HG
Sbjct: 43  VAMDLEMTGLNPQQDQILSIGLVPIEHGEIPLARAEQKLVQI------RGSVGQSATIHG 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLD-PSR 122
           I D  L    +        W F N+      +AH+A  D  F+  +L  I    L  P+ 
Sbjct: 97  ILDNHLVQAVTIEEAMG--W-FINQTYGRVLVAHHAPLDCRFLQQDLLAIYHQALVLPA- 152

Query: 123 IIDTLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            IDTL + R +    ++        L +  +RYG+ I   + H AL D+    ++ +  M
Sbjct: 153 -IDTLMLERHRLLREQSVIKEGSLRLGACRERYGLPI--YTAHSALTDALACGELLLAQM 209

Query: 176 --VGGS 179
             +GG+
Sbjct: 210 AAMGGA 215


>gi|257870106|ref|ZP_05649759.1| exonuclease [Enterococcus gallinarum EG2]
 gi|257804270|gb|EEV33092.1| exonuclease [Enterococcus gallinarum EG2]
          Length = 180

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 7/116 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI  E + + P F  I+ +   ++N  N+  +AHNA FD G +   L     +   
Sbjct: 53  IQIHGIHPEDVVNAPKFPDIWKQIQQYYN-LNSLIVAHNAGFDTGVLAGCLDYYGIE--Q 109

Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           P+ + + T+  +R+ +P   N  LN++C++  I +   + H AL DS   + + ++
Sbjct: 110 PNYLSLCTVRTSRKLYPEFENHKLNTVCQQLQIPL--LNHHDALEDSRACAQILLR 163


>gi|220918921|ref|YP_002494225.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956775|gb|ACL67159.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 200

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 79/176 (44%), Gaps = 17/176 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF 69
            D+ET GLD++ D I+ +G + + + + +    ++  + P +G+  SP +++ H +    
Sbjct: 16  LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEHGKAVSPRSVQAHQLVAGD 75

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128
            +  P  + +  E       + A  + H+A  ++GF+    +    + P  P  ++DT+ 
Sbjct: 76  TRGAPPLAEVLPELERRL--RGAVLLVHHAPIELGFLKRAFRAAGLRWPGPP--VVDTVK 131

Query: 129 IA-------RRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +        RR  P    D   LN    R  + +     H AL D+   +++++ +
Sbjct: 132 LLLRLDARERRSFPELPADPPVLNLSAARRRLGLPDYQAHDALTDAVATAELFLVL 187


>gi|56460528|ref|YP_155809.1| DNA polymerase III subunit epsilon [Idiomarina loihiensis L2TR]
 gi|56179538|gb|AAV82260.1| 3'-5' exonuclease/DnaQ family enzyme [Idiomarina loihiensis L2TR]
          Length = 248

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 5/131 (3%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           NK   +  D ETTGLD +   I+ I A+ +          + ++    R  + E++ +HG
Sbjct: 54  NKTPMVAVDFETTGLDPEQHGIVSIAAIPMTTERILFSEAKSWVVKPRRSLTDESVVIHG 113

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRI 123
           IT   ++  P   SI  E  +        W+ H    +  F+   + +R++++   P  +
Sbjct: 114 ITHSEIEHAPDLESIIDELLELVA--GKVWVVHYHGIERPFLQRGIKERLHENIQFP--L 169

Query: 124 IDTLSIARRKH 134
           IDT+ I  R H
Sbjct: 170 IDTMEIEARFH 180


>gi|288941633|ref|YP_003443873.1| ribonuclease T [Allochromatium vinosum DSM 180]
 gi|288897005|gb|ADC62841.1| ribonuclease T [Allochromatium vinosum DSM 180]
          Length = 226

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G D++   ++E+ AV +   S    +   T    + P  G +  P AL  +G
Sbjct: 21  VVVDVETAGFDAQRHALLEVAAVIIRQRSDGLLEPAPTLACHVLPFVGSELDPRALAFNG 80

Query: 65  ITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114
           I       + + +  +   I +             A  + HNA FD+GFI A ++R    
Sbjct: 81  IDPHHPFRDAISEHDALERILTPIRKAVKSTGCNRAILVGHNAHFDLGFIKAAVERTGYK 140

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P     + DT+++        +  L    +  G+   H   H A  D+   + ++  +
Sbjct: 141 RNPFHAFSVFDTVTLGGLMF--GQTVLAKASRAAGLHWKHSEAHSAAYDAEQTARLFCAV 198

Query: 175 M 175
           +
Sbjct: 199 V 199


>gi|157283974|ref|YP_001468242.1| exonuclease RNase T and DNA polymerase III [Kineococcus
           radiotolerans SRS30216]
 gi|151363116|gb|ABS06118.1| Exonuclease RNase T and DNA polymerase III [Kineococcus
           radiotolerans SRS30216]
          Length = 203

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D E+T LD +   ++EI   ++         F   + P      P A  +HGI DE 
Sbjct: 50  VLLDTESTALDGQ---LVEIAITDVHGAP----LFSSLVRPT-TPVDPGARAVHGIGDEE 101

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           L+D P    +  +       ++   IA+NA+FD G +  E +RI  D L  +R
Sbjct: 102 LQDAPDLLMVAPQLRAALAGRHV--IAYNARFDRGLLRREGERIGVDLLSSTR 152


>gi|260902236|ref|ZP_05910631.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308110524|gb|EFO48064.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
          Length = 236

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 12/166 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTG+D++ D+I+ IG V+L LD      + + ++C +G+   PE  +++G+T +
Sbjct: 53  VALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYIC-HGQFIKPETAQINGLTPQ 111

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L          +   +    +    +AH    +  FI+A      +    P+  IDTL 
Sbjct: 112 DLAKGLPLDEGMNRLLERITGKVV--LAHGCCIEKAFIHAYFSSRYQVEDFPAYFIDTLQ 169

Query: 129 I------ARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHL 166
           I      A +    S   L+ L + Y +   +SH +   AL  + L
Sbjct: 170 IEKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAEL 215


>gi|167035772|ref|YP_001671003.1| DNA polymerase IIIsubunit epsilon [Pseudomonas putida GB-1]
 gi|166862260|gb|ABZ00668.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1]
          Length = 201

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 13/166 (7%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65
           R  V D ETTG+      R  E+ AV +L+  +    +Q  +  N     P     L GI
Sbjct: 3   RIAVIDFETTGVSPGAGCRATEV-AVVMLEGGRIVERYQSLM--NAGVPVPAFVAGLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   L+  P    + +E  +F        +AHNA FD  F + EL RI +    P     
Sbjct: 60  TTAMLRTAPPVDKVMNEVAEFVG--GTPLLAHNAAFDQKFWDYELSRIGRSRSQP--FAC 115

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGIT---ISHRSKHGALLDSHLL 167
           +L ++RR  P++ N  L +L +  G+     +HR+   A + ++LL
Sbjct: 116 SLLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMADAEMAANLL 161


>gi|312140266|ref|YP_004007602.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S]
 gi|311889605|emb|CBH48922.1| putative DNA polymerase III epsilon subunit [Rhodococcus equi 103S]
          Length = 228

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 10/150 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ETTG D  + RI+    V +      +R    ++   G +   +A  +HGI+    
Sbjct: 11  AFDLETTGRDPLSARIVTGSVVTVGGEGHRSRN---WIVDPGVEIPVDAAAVHGISTAQA 67

Query: 71  KDKPS-FSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           +++   ++S + E      +  A     +A NA +D+  ++AE +R+   PL     ++D
Sbjct: 68  RERGQDYASGYREIRSALTDAWAAGHVVVAFNAAYDLTVLDAEGRRLGWPPLSGYGLVVD 127

Query: 126 TLSIARRKHPSSRN--DLNSLCKRYGITIS 153
              I R      R    L++LC+ YG+ ++
Sbjct: 128 PYVIDREMDRDRRGKRTLSALCEHYGVVLA 157


>gi|229592763|ref|YP_002874882.1| putative exonuclease [Pseudomonas fluorescens SBW25]
 gi|229364629|emb|CAY52540.1| putative exonuclease [Pseudomonas fluorescens SBW25]
          Length = 203

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 17/173 (9%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65
           R  V D ETTG+   +  R  EI AV +L+  +    +Q  +  N     P  + +L GI
Sbjct: 3   RIAVIDFETTGITPNSHCRATEI-AVVILERGQIVDRYQSLM--NAGVRVPGFIEQLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  L+  P    + +E  +F        +AHNA FD  F + EL  I +  L   +   
Sbjct: 60  SNAMLRSAPPAERVMNEVNEFVG--TTPLMAHNAAFDQKFWDYELGLIRRTRLQ--KFAC 115

Query: 126 TLSIARRKHPSSRN----DLNSLCKRYGITISHR----SKHGALLDSHLLSDV 170
           +L +ARR  P++ N     LN+  +      +HR    ++  A L +HL  ++
Sbjct: 116 SLLLARRLMPTAPNHKLGTLNAFAQLPHTGKAHRAMADAEMAANLTAHLAQEL 168


>gi|160689368|gb|ABX45542.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689370|gb|ABX45543.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689396|gb|ABX45556.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689398|gb|ABX45557.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689444|gb|ABX45580.1| polymerase C [Bacillus amyloliquefaciens]
          Length = 259

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160
           D+GF+N   +R+ K     + +IDTL +AR  +P  +N  LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKRLLKTEKAKNPVIDTLELARFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ 180
           + D+     + +KM+   ++
Sbjct: 59  VFDAEATGYLLLKMLKDAAE 78


>gi|332532199|ref|ZP_08408080.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038297|gb|EGI74742.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 671

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 6/102 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           V DIETTG     +RI EIG V++  + K   T+   + P   ++ P  +  L GI+D  
Sbjct: 569 VVDIETTGGLKGGNRITEIGIVKV-RHGKVIDTWTSLVNP--ERHIPGFITSLTGISDSM 625

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           + + P F+ I     D      + ++AHN  FD GFI  E +
Sbjct: 626 VYNAPVFADIVKPLLD--KLAGSIFVAHNVNFDYGFIKKECE 665


>gi|229005847|ref|ZP_04163541.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock1-4]
 gi|228755311|gb|EEM04662.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock1-4]
          Length = 286

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 13/116 (11%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLD 119
           L GIT+  +   P+   +   F  F  E     +AHNA FD+ F+  NA + R+   P  
Sbjct: 32  LTGITNYRVSGAPTIQEVLPLFLAFLGEDTI--VAHNASFDMRFLKSNANMLRL---PEP 86

Query: 120 PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + +IDT+ +A+R  KH +  + L +L +  GI +   S H AL D    + VY K
Sbjct: 87  KNIVIDTVFLAKRYMKH-APNHKLETLKRMLGIRL---SSHNALDDCITCAAVYQK 138


>gi|160689332|gb|ABX45524.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689388|gb|ABX45552.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689406|gb|ABX45561.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689408|gb|ABX45562.1| polymerase C [Bacillus amyloliquefaciens]
          Length = 259

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160
           D+GF+N   +R+ K     + +IDTL +AR  +P  +N  LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKRLLKTEKAKNPVIDTLELARFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ 180
           + D+     + +KM+   ++
Sbjct: 59  VFDAEATGYLLLKMLKDAAE 78


>gi|146301193|ref|YP_001195784.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
 gi|146155611|gb|ABQ06465.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
          Length = 453

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 9/160 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG     + I EI A+   D  +    F   + P      P  +KL GI +  L
Sbjct: 4   ILDIETTGGQFNEEGITEI-AIYKFDGHEVVDQFISLVNPE-IPIQPFVVKLTGINNAML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  +     +     +   +AHNA FD   +  E +R+  D    ++ + T+ +A
Sbjct: 62  RSAPKFYEVAKRIIEI--TTDCVIVAHNASFDYRILRTEFRRLGYD--FEAKTLCTVELA 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167
           ++  P   +  L  L +  GI ++  HR+   A+  + L 
Sbjct: 118 KKLIPEQPSYSLGKLVRALGIPMADRHRASGDAMATTKLF 157


>gi|222081448|ref|YP_002540811.1| DNA polymerase III subunit epsilon [Agrobacterium radiobacter K84]
 gi|221726127|gb|ACM29216.1| polymerase epsilon subunit protein [Agrobacterium radiobacter K84]
          Length = 340

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 48/107 (44%), Gaps = 16/107 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+ +ND IIEIG V     D+        V+  L   G    PE  +L GI
Sbjct: 89  VILDTETTGLNHRNDEIIEIGLVAFTFDDFGHIGDVIGVYGGLQQPGTPIPPEITRLTGI 148

Query: 66  TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           TDE ++    D      + +   D         IAHNA FD  F  A
Sbjct: 149 TDEMVEGQMIDMQQVRRMVAPA-DLV-------IAHNAGFDRPFCEA 187


>gi|227431886|ref|ZP_03913909.1| DNA-directed DNA polymerase III epsilon subunit [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352353|gb|EEJ42556.1| DNA-directed DNA polymerase III epsilon subunit [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 797

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 15/169 (8%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D+ETTG    K  RII+IG +  +   +    F+ F+ P G+    +  +L  I+ +
Sbjct: 8   VVVDLETTGHSVKKGGRIIQIG-MTFIKKRQIVDHFESFVNP-GQLIDRQIQQLTHISQK 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P F  I     +    QN   IAHN  FD  ++N E +R     L  S  IDT+ 
Sbjct: 66  DVQNAPYFEEIAPLLQNLL--QNTVIIAHNVNFDYPYLNDEFERTGFQLLK-SAAIDTVQ 122

Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A+   P +      DL +      + I+ ++ H A  D+H  + +++K
Sbjct: 123 LAQILFPMAPGYRLLDLTTY-----LNITLKNAHRANADAHATALLFLK 166


>gi|160689336|gb|ABX45526.1| polymerase C [Bacillus amyloliquefaciens]
          Length = 259

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160
           D+GF+N   +R+ K     + +IDTL +AR  +P  +N  LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKRLLKTEKAKNPVIDTLELARFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ 180
           + D+     + +KM+   ++
Sbjct: 59  VFDAEATGYLLLKMLKDAAE 78


>gi|157736764|ref|YP_001489447.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|315635941|ref|ZP_07891202.1| exonuclease [Arcobacter butzleri JV22]
 gi|157698618|gb|ABV66778.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|315479725|gb|EFU70397.1| exonuclease [Arcobacter butzleri JV22]
          Length = 203

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 9/170 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+ K D I+ IGAV + D     R TF +FL P+   N  E++K+H +   
Sbjct: 32  VSLDCETTGLNPKKDEILSIGAVLIKDNKILMRKTFNIFLKPSKDINI-ESIKVHHLRQI 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D         +  DF   +    + +  +FD+  I+   ++     L P+  I+  S
Sbjct: 91  DLNDALEPEIGIYQLLDFIGSR--PIVGYYIEFDMAIISKYTKKYLGIKL-PNTPIEVSS 147

Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           I      S+ N    DL        + I    KH AL D+ + S +++K+
Sbjct: 148 IYYDSRKSTSNYGFIDLKFDTIMKNLNIPVLGKHDALNDAIMTSMIFLKL 197


>gi|254514041|ref|ZP_05126102.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
           NOR5-3]
 gi|219676284|gb|EED32649.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
           NOR5-3]
          Length = 183

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 15/175 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  ++ D E +GLD     ++ +G V +        + +  L  N R++  ++  +H + 
Sbjct: 1   MSFLICDAEMSGLDPAKAELLSMGWVRVEGLEIVMGSAEHRLIRN-RRSVGQSATIHQLR 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIID 125
           D  L++    + + S+F           + HNA+ D  F++ A  Q      L P+  +D
Sbjct: 60  DCELREADDITEVLSDFLQ--AAAGCVLVFHNARLDTAFLDRAAKQAFGTPLLLPT--VD 115

Query: 126 TL-----SIARRKHPSSRNDLN-SLCK-RYGITISHRSKHGALLDSHLLSDVYIK 173
           TL      + R++ P  + DL    C+ RYG+   H S H AL D+   +++ + 
Sbjct: 116 TLWLEQRLLQRQERPIGQGDLRLGACRDRYGLI--HHSAHNALTDAMATAELLLA 168


>gi|170016856|ref|YP_001727775.1| DNA polymerase III, epsilon subunit [Leuconostoc citreum KM20]
 gi|169803713|gb|ACA82331.1| DNA polymerase III, epsilon subunit [Leuconostoc citreum KM20]
          Length = 177

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 7/113 (6%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT   +   P F  I+      F E     +AHNA FD G +   L     D  +P 
Sbjct: 52  IHGITAADVAQAPKFPEIWDMIAPLFTEDKL-VVAHNAAFDNGILKGTLDYY--DIAEPH 108

Query: 122 -RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             ++DT+  +R+  P  +N  LN++ +  GIT+ H   H AL D+   +++ I
Sbjct: 109 YMLLDTVRSSRQLFPDFKNHKLNTVAQNLGITLDHH--HNALDDAVAAANILI 159


>gi|322804522|emb|CBZ02073.1| putative DNA polymerase III epsilon chain [Clostridium botulinum
           H04402 065]
          Length = 309

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +KD+  F  I+ +  D+FN  N   IAHNA FD+  + + L+  N   +     I T
Sbjct: 58  PHMVKDELEFDKIWGKIKDYFN--NNLVIAHNASFDMSVLKSTLKLYN-IKMPSFEYICT 114

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G    H   H AL D+   S++ I +
Sbjct: 115 MKLSKNFYSNIDNARLNTVNNFLGYKFKH---HDALADAMACSNILINI 160


>gi|258512426|ref|YP_003185860.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479152|gb|ACV59471.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 218

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 12/170 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D+ET+G     D+I+ +       +S + + +F   +  +   + P  + +L G+T E
Sbjct: 32  VLDLETSGFSPARDKILSVACATFSGWSSEPDESFYAIVRHDDVADVPSHIWELTGLTPE 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---ELQRINKDPLDPSRIID 125
            ++D            +    +   W+AH+ + D+GF+      L R+   PL     + 
Sbjct: 92  AMRDGEPLEVALRRALELGAGRV--WVAHHVRHDLGFLQRATDALWRLRLRPLAMDTAVV 149

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +AR   P +   L+  C+  GI +  R  H A  D  + + V+ K M
Sbjct: 150 AQVLARAARPLT---LDEACEWLGIPVVGR--HRADADVRMTAAVWRKEM 194


>gi|25026770|ref|NP_736824.1| DNA polymerase III subunit epsilon [Corynebacterium efficiens
           YS-314]
 gi|23492049|dbj|BAC17024.1| putative DNA polymerase III [Corynebacterium efficiens YS-314]
          Length = 420

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 5/107 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +   I+++G+     R+I   A+ L   ++   TF   L P    + P    LHG+TDE 
Sbjct: 92  VAVTIQSSGIHPSTSRMITFTAITLTADNEPVETFHAVLNPG---SDPGPFHLHGVTDEE 148

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            +    FS I        + +    I HNA    GFI +E +R   D
Sbjct: 149 FRSARRFSQILKAVDRLIDGRT--LILHNAPRTWGFIVSEAKRAMND 193


>gi|262341288|ref|YP_003284143.1| DNA polymerase III subunit epsilon [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272625|gb|ACY40533.1| DNA polymerase III subunit epsilon [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 256

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 16/163 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FDIE TG++   DRIIEI  +++  + ++ ++T+ V  CP G    P++  +HGI +E +
Sbjct: 12  FDIEATGINIGKDRIIEISILKIFPNGNQEDKTWLV--CP-GIPIPPQSTAIHGIKNEDV 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQR--INKDPLDPSRIIDTL 127
           + K  F  +   F  F   +N +   +N+ +FD+  +  E+ R  I+ D +   + ID  
Sbjct: 69  EGKLKFKDV--AFSIFKMIENTDLAGYNSNRFDIPILAEEMLRAGISFD-IKKHKTIDVQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRYG---ITISHRSKHGALLDSHLL 167
            I  +  P +   L++  K Y    +  +H SK  A     +L
Sbjct: 126 VIFHKMEPRT---LSAAYKYYCSKELIKAHSSKEDAFATYEIL 165


>gi|240142188|ref|YP_002966698.1| putative Exonuclease [Methylobacterium extorquens AM1]
 gi|240012132|gb|ACS43357.1| putative Exonuclease [Methylobacterium extorquens AM1]
          Length = 190

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 50/130 (38%), Gaps = 12/130 (9%)

Query: 11  VFDIETTGLDS--------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            FD ETTG  +        +  RI+EIG V          TF+ FL P+G     E   L
Sbjct: 4   AFDTETTGTPAPGLPLRHPRQPRIVEIGCVLYYPDGAVADTFRTFLRPDGFTIPMEMRDL 63

Query: 63  HGIT-DEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQRINKDPLDP 120
           HGIT     ++    +  F    +F     A  IA H   FD   +  E+     DP  P
Sbjct: 64  HGITVSAARREGLPAAEAFGRLKEFL--AGAGRIAVHFVPFDATMVAIEIAHGAPDPFGP 121

Query: 121 SRIIDTLSIA 130
            R     S A
Sbjct: 122 GREFACTSAA 131


>gi|212211731|ref|YP_002302667.1| ribonuclease T [Coxiella burnetii CbuG_Q212]
 gi|212010141|gb|ACJ17522.1| ribonuclease T [Coxiella burnetii CbuG_Q212]
          Length = 221

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 21/182 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLC---P-NGRKNSPEALKLH 63
           +V DIET GL+   + ++EI AV L++ +K  +  Q  +F C   P  G    P +L++ 
Sbjct: 21  VVVDIETGGLEPLKNPLLEIAAV-LVEVNKEGQLCQGELFACHVLPFEGAALDPASLEIT 79

Query: 64  GITDEF------LKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQR-- 112
            I D +      + +K +   +F+      N    + A  + HNA FD+ FI A ++R  
Sbjct: 80  RI-DPYHPFRFAVDEKKALQDLFAFVEKAVNVAQCRRAVLVGHNAHFDLTFIQAAMKRCK 138

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + K P       DT ++A       +  L    +   +    +  H A+ D+   ++++ 
Sbjct: 139 LKKSPFHAFTCFDTATLAAIVF--GKTVLAKALRAANLPFDKKEAHSAIYDAKCAAELFC 196

Query: 173 KM 174
           K+
Sbjct: 197 KI 198


>gi|227546804|ref|ZP_03976853.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|317481634|ref|ZP_07940669.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|322691564|ref|YP_004221134.1| exonuclease [Bifidobacterium longum subsp. longum JCM 1217]
 gi|227212766|gb|EEI80647.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|316916924|gb|EFV38311.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456420|dbj|BAJ67042.1| putative exonuclease [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 235

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 11/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG    +  I EIGAV + +    ++ FQ  + P  R    +   L GITD  
Sbjct: 35  VALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNPL-RPIPRQITTLTGITDAM 92

Query: 70  LKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           + D      +   F  +     A       + HN  FD+ F++   + I       +   
Sbjct: 93  VADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACAD-Y 151

Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           DT+ I+R   P+ R+  L  L  R+G  I+   +H AL D+
Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFG--IADNEEHRALSDA 190


>gi|255547339|ref|XP_002514727.1| exonuclease, putative [Ricinus communis]
 gi|223546331|gb|EEF47833.1| exonuclease, putative [Ricinus communis]
          Length = 501

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 22/159 (13%)

Query: 12  FDIETTGLDSKND--RIIEIGAV--------ELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           FD+ETT  +       I+E GA+        EL  YS   R   + L       SP +++
Sbjct: 15  FDLETTVPNRPGQGFAILEFGAILVCSRKLEELHSYSTLVRPANLSLI------SPTSVR 68

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120
            +GIT + +   P+F+ I    ++  N +   W  HN  +FD   I      I + P + 
Sbjct: 69  CNGITHDAVVLAPTFAEIADIVYEILNGRI--WAGHNIQRFDCVRIREAFAEIGRQPPEN 126

Query: 121 SRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT-ISHRS 156
             IIDTL++   K      D+   SL   +G+   +HRS
Sbjct: 127 KGIIDTLALLTHKFGRRAGDMKMASLATYFGLGKQTHRS 165


>gi|160689434|gb|ABX45575.1| polymerase C [Bacillus amyloliquefaciens]
          Length = 259

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160
           D+GF+N   +R+ K     + +IDTL +AR  +P  +N  LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKRLLKPKKAKNPVIDTLELARFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ 180
           + D+     + +KM+   ++
Sbjct: 59  VFDAEATGYLLLKMLKDAAE 78


>gi|323499174|ref|ZP_08104152.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
 gi|323315807|gb|EGA68840.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
          Length = 239

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 25/172 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGLDS+ D II IG V   L+    N+     + P  +  + E++ +HGIT  
Sbjct: 50  LAMDFETTGLDSEQDDIITIGTVPFTLNRILVNQAKHWTVRPR-KPLAEESVVIHGITHS 108

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTL 127
            + D P  + ++ +        N   + H  + +  F N  LQ RI +    P  ++DT+
Sbjct: 109 DVLDAPDLTEVYPQV--LAEMSNRIMVVHYQRIEREFFNRALQTRIQEGIEFP--VVDTM 164

Query: 128 SI---------------ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +I                R + P S   L +   RYG  +   + H AL D+
Sbjct: 165 NIETLWQQKENGGLLNKMRGRKPESVR-LGASRSRYG--LPQYTPHHALTDA 213


>gi|322689603|ref|YP_004209337.1| exonuclease [Bifidobacterium longum subsp. infantis 157F]
 gi|320460939|dbj|BAJ71559.1| putative exonuclease [Bifidobacterium longum subsp. infantis 157F]
          Length = 235

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 11/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG    +  I EIGAV + +    ++ FQ  + P  R    +   L GITD  
Sbjct: 35  VALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNPL-RPIPRQITTLTGITDAM 92

Query: 70  LKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           + D      +   F  +     A       + HN  FD+ F++   + I       +   
Sbjct: 93  VADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACAD-Y 151

Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           DT+ I+R   P+ R+  L  L  R+G  I+   +H AL D+
Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFG--IADNEEHRALSDA 190


>gi|297155821|gb|ADI05533.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
           BCW-1]
          Length = 241

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 65/160 (40%), Gaps = 23/160 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
            FD ETTG+D + DRI+    V            +  + P      PEA   +HG+TD  
Sbjct: 11  AFDTETTGIDVEQDRIVSAALVVQRGAGSLPEVRRWLVSPG--IPVPEAASAIHGLTDSH 68

Query: 70  LKDKPSF-SSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRINKDP-------- 117
           L+    + + +  E      EQ A     +  NA FD+  ++ EL+R             
Sbjct: 69  LQRHGRWPAPVVDEVARALAEQAARGTPVVVMNAPFDLTLLDRELKRHRNASLSTYVSLR 128

Query: 118 ----LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS 153
               LDP R++D      RK    R  L  LC  YG+ ++
Sbjct: 129 SLTVLDP-RVLDKHLDRYRK---GRRTLTDLCAHYGVELT 164


>gi|222823839|ref|YP_002575413.1| exonuclease [Campylobacter lari RM2100]
 gi|222539061|gb|ACM64162.1| conserved hypothetical protein, putative exonuclease [Campylobacter
           lari RM2100]
          Length = 459

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 5/101 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K+  IV D ETTGL    D I+++  ++   Y   ++ F+    P  +    EA K+HGI
Sbjct: 148 KLNVIVIDTETTGLREWEDEILQLSIIDETGYLIFDKYFK----PKYKSTWIEAQKIHGI 203

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
              F+++K S  +   +    FN+ +   I +N  FD+ FI
Sbjct: 204 KPAFVQNKASIDNYKIQLEKIFNDADVI-IGYNLDFDLKFI 243


>gi|163756168|ref|ZP_02163283.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
 gi|161323780|gb|EDP95114.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
          Length = 454

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 9/161 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG     + I EI A+   D  +    F   + P  R+  P  + L GI    L
Sbjct: 4   IVDIETTGGKYNEEGITEI-AIYRFDGHEVVDQFISLVNPE-REIQPFVVNLTGINSRML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D P F  +     +    ++   +AHNA FD   +  E +R+  +    S  + T+ ++
Sbjct: 62  RDAPKFYEVAKRIVEI--TEDCIIVAHNASFDYRILQLEFKRLGFEYKRKS--LCTVELS 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLS 168
           ++  P   +  L  L +  GI +S  HR+   AL    L  
Sbjct: 118 KKLIPEMESYKLGKLVRALGIPMSDRHRASGDALATVKLFQ 158


>gi|149194243|ref|ZP_01871340.1| DNA polymerase III subunit epsilon [Caminibacter mediatlanticus
           TB-2]
 gi|149135418|gb|EDM23897.1| DNA polymerase III subunit epsilon [Caminibacter mediatlanticus
           TB-2]
          Length = 248

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 14/174 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEAL-KL 62
           NK    + D+E      K  +IIEIGAV+L +    +  +F ++      K+ P  + K+
Sbjct: 62  NKSEYTILDLEVNNSKPKEGQIIEIGAVKLKNLVPIDEFSFLIY-----AKDIPRYVTKV 116

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
            GI ++ LK++ S   I  +F  F  +  +  +AH A FD  F+  + ++ +    L+P 
Sbjct: 117 TGINNQMLKNEKSQKEILEKFRLFLGD--SVIVAHAADFDFNFLAKQFEKEDLGYLLNPH 174

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             + T+++A++   ++R  L  L  +  + +     H AL D+   + V++K +
Sbjct: 175 --LCTITLAKKTLKANRYGLKYL--KEELNLPEEIDHRALGDARTTTRVFLKSL 224


>gi|297797093|ref|XP_002866431.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312266|gb|EFH42690.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 484

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 22/159 (13%)

Query: 12  FDIETTGL--DSKNDRIIEIGA--------VELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           FD+ETT      +   I+E G+        VEL +YS   R   + L       +P ++K
Sbjct: 16  FDVETTIPFRAGQGYAILEFGSILVCPKKLVELRNYSVLVRPANLNLI------TPRSVK 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP 120
            +GI  E ++   +F+ I    +D  + +   W  HN  KFD   I+     I +DP +P
Sbjct: 70  CNGIKREDVESAATFADIADTVYDILHGRI--WAGHNILKFDCPRISEAFAEIGRDPPEP 127

Query: 121 SRIIDTLSIARRKHPSSRNDLN--SLCKRYGI-TISHRS 156
              ID+L++  ++      D+   +L   +G+   +HRS
Sbjct: 128 KGTIDSLALLTQRFGRRAGDMKMATLASYFGLGNQTHRS 166


>gi|23464698|ref|NP_695301.1| exonuclease [Bifidobacterium longum NCC2705]
 gi|189438951|ref|YP_001954032.1| DNA polymerase III subunit alpha [Bifidobacterium longum DJO10A]
 gi|239620784|ref|ZP_04663815.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132392|ref|YP_003999731.1| polc [Bifidobacterium longum subsp. longum BBMN68]
 gi|23325262|gb|AAN23937.1| possible exonuclease [Bifidobacterium longum NCC2705]
 gi|189427386|gb|ACD97534.1| DNA polymerase III alpha subunit [Bifidobacterium longum DJO10A]
 gi|239516360|gb|EEQ56227.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311772644|gb|ADQ02132.1| PolC [Bifidobacterium longum subsp. longum BBMN68]
          Length = 235

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 11/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG    +  I EIGAV + +    ++ FQ  + P  R    +   L GITD  
Sbjct: 35  VALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNPL-RPIPRQITTLTGITDAM 92

Query: 70  LKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           + D      +   F  +     A       + HN  FD+ F++   + I       +   
Sbjct: 93  VADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACAD-Y 151

Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           DT+ I+R   P+ R+  L  L  R+G  I+   +H AL D+
Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFG--IADNEEHRALSDA 190


>gi|319956599|ref|YP_004167862.1| exonuclease rnase t and DNA polymerase iii [Nitratifractor
           salsuginis DSM 16511]
 gi|319419003|gb|ADV46113.1| Exonuclease RNase T and DNA polymerase III [Nitratifractor
           salsuginis DSM 16511]
          Length = 294

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 11/133 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I+ D ETTG D++ DRI ++  + +LD S         LC    +   +A+ +H IT
Sbjct: 1   MKTIILDTETTGTDAE-DRICQLAYL-VLDESGEVVEHYNELCTPPLEIKYDAMAIHHIT 58

Query: 67  DEFLKDKPSFSSI--FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            E L+ KP+ +    F    +  + +N   +  NA FD+  +  E         +  R+I
Sbjct: 59  PEMLEGKPACTETEGFRRLRELNSPENL-LVIQNAPFDLAMLEKEGFE------NRMRLI 111

Query: 125 DTLSIARRKHPSS 137
           DT  + R+  P S
Sbjct: 112 DTFRLVRKFMPDS 124


>gi|300770507|ref|ZP_07080386.1| DNA-directed DNA polymerase III epsilon subunit [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762983|gb|EFK59800.1| DNA-directed DNA polymerase III epsilon subunit [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 203

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 12/166 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I F++ T   +S    +  +G V + D       F   + P   +   +  ++HGI  + 
Sbjct: 9   IDFELATAAYNS----VCSVGIVRV-DQGVITDEFYSLVKPPKNEYMWQTTRVHGIKPKD 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDPSRIIDTL 127
             D P+F  I+ +  D    QN + +AHN KFD   ++  ++    D   L    + +  
Sbjct: 64  TADAPTFEEIYPKIKDLL--QNRKMVAHNEKFDREVLSKTMKACGLDYRELHLPVMWECT 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           S   R     +  LN  C+  GI ++H   H AL D+   + +Y+K
Sbjct: 122 SKIYRDKGFKKTKLNLCCEIMGIDLNH---HEALSDAKAAAFLYLK 164


>gi|227548945|ref|ZP_03978994.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078970|gb|EEI16933.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 472

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDE 68
           + FD+ET   +     I +IG V ++D  +  R   +   P G     P  + +HGI+ E
Sbjct: 123 VGFDVETA--NPAWGSICQIGLVRVIDGREVERVTWLCTPPPGLDEFDPSNVAIHGISAE 180

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            ++  P  +    E  +F  E     +AHNA+FD   +    + + +D
Sbjct: 181 TVEGSPPAAQRIDELVEFVGELPV--VAHNAQFDATALREACRAVGRD 226


>gi|33519827|ref|NP_878659.1| ribonuclease T [Candidatus Blochmannia floridanus]
 gi|54036331|sp|Q7VR55|RNT_BLOFL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|33504172|emb|CAD83434.1| ribonuclease T [Candidatus Blochmannia floridanus]
          Length = 223

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 25/207 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ET+GL++  + ++EI  + L        +      F +   P G    PEAL L+
Sbjct: 20  VVIDVETSGLNASTNALLEIATITLKMNEDGWLHVDNMLHFHIKSFP-GAILQPEALALN 78

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINK 115
            I         + ++ +   IF         Q    A  +AHNA FD  F+ A  +R N 
Sbjct: 79  KINPNSPLRFAVTEQEALVEIFKMVHVGIKAQQCNKAIIVAHNASFDHSFLMAATERTNN 138

Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              +P  P    DT +++       +  L+  C+  GI       H AL D+   + ++ 
Sbjct: 139 IQDNPFHPFVTFDTAALSGLVF--GQTVLSKACEYAGIIFDKNKAHSALYDAEKTAILFC 196

Query: 173 KMM-----VGGSQINFGFKTNEDRFFK 194
            ++     +GG        TN + + K
Sbjct: 197 TLVNAWKKLGGWPWKPSLITNNEGYHK 223


>gi|296454533|ref|YP_003661676.1| DNA polymerase III subunit epsilon [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183964|gb|ADH00846.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 235

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 11/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG    +  I EIGAV + +    ++ FQ  + P  R    +   L GITD  
Sbjct: 35  VALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNPL-RPIPRQITTLTGITDAM 92

Query: 70  LKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           + D      +   F  +     A       + HN  FD+ F++   + I       +   
Sbjct: 93  VADLDPIDKVLPRFIAWLATPAAGPTVEPIVGHNVSFDLRFLDYNTRHIAGCGFACAD-Y 151

Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           DT+ I+R   P+ R+  L  L  R+G  I+   +H AL D+
Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFG--IADNEEHRALSDA 190


>gi|317489230|ref|ZP_07947747.1| exonuclease [Eggerthella sp. 1_3_56FAA]
 gi|325832235|ref|ZP_08165234.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1]
 gi|316911631|gb|EFV33223.1| exonuclease [Eggerthella sp. 1_3_56FAA]
 gi|325486071|gb|EGC88525.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1]
          Length = 998

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 9/149 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG    +D + +I A  + +  +    F  F+ P G+    +   L  I D  
Sbjct: 43  VVLDTETTGFSFNHDELTQIAAARM-EQGEIVEWFITFVNP-GKPIPEDVAHLTDIHDSD 100

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P  +   ++  +F  +  A+ +AHNA+FD  F     +  +  PL  +  ID+L +
Sbjct: 101 VADAPLPADALAKLVEFIGD--AKVVAHNAEFDRTFTT---RHPSGYPLLENTWIDSLDL 155

Query: 130 ARRKHPSSRND-LNSLCKRYGITIS-HRS 156
           AR   P  ++  L  L + +G  +S HR+
Sbjct: 156 ARIALPRMKSHRLLDLVRAFGAPLSTHRA 184


>gi|29654993|ref|NP_820685.1| ribonuclease T [Coxiella burnetii RSA 493]
 gi|153207536|ref|ZP_01946219.1| ribonuclease T [Coxiella burnetii 'MSU Goat Q177']
 gi|154706868|ref|YP_001423724.1| ribonuclease T [Coxiella burnetii Dugway 5J108-111]
 gi|165918353|ref|ZP_02218439.1| ribonuclease T [Coxiella burnetii RSA 334]
 gi|212217974|ref|YP_002304761.1| ribonuclease T [Coxiella burnetii CbuK_Q154]
 gi|29542262|gb|AAO91199.1| ribonuclease T [Coxiella burnetii RSA 493]
 gi|120576504|gb|EAX33128.1| ribonuclease T [Coxiella burnetii 'MSU Goat Q177']
 gi|154356154|gb|ABS77616.1| ribonuclease T [Coxiella burnetii Dugway 5J108-111]
 gi|165918003|gb|EDR36607.1| ribonuclease T [Coxiella burnetii RSA 334]
 gi|212012236|gb|ACJ19616.1| ribonuclease T [Coxiella burnetii CbuK_Q154]
          Length = 224

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 21/182 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCP----NGRKNSPEALKLH 63
           +V DIET GL+   + ++EI AV L++ +K  +  Q  +F C      G    P +L++ 
Sbjct: 21  VVVDIETGGLEPLKNPLLEIAAV-LVEVNKEGQLCQGELFACHVLPFEGAALDPASLEIT 79

Query: 64  GITDEF------LKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQR-- 112
            I D +      + +K +   +F+      N    + A  + HNA FD+ FI A ++R  
Sbjct: 80  RI-DPYHPFRFAVDEKKALQDLFAFVEKAVNVAQCRRAVLVGHNAHFDLTFIQAAMKRCK 138

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + K P       DT ++A       +  L    +   +    +  H A+ D+   ++++ 
Sbjct: 139 LKKSPFHAFTCFDTATLAAIVF--GKTVLAKALRAANLPFDKKEAHSAIYDAKCAAELFC 196

Query: 173 KM 174
           K+
Sbjct: 197 KI 198


>gi|87302916|ref|ZP_01085720.1| exonuclease [Synechococcus sp. WH 5701]
 gi|87282412|gb|EAQ74371.1| exonuclease [Synechococcus sp. WH 5701]
          Length = 187

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 14/163 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--KLHGITD 67
           +  D ET   +   D +  +  + +      +RT+++      R  SP  +   +HGIT 
Sbjct: 27  VALDFETA--NYSRDSVCSLAIIRVESLKVVSRTYRLI-----RPPSPHFMFTDIHGITW 79

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +K +P+F  ++ EF   F E  +   AHNA FD   + A        P   +  + T+
Sbjct: 80  GDVKSEPTFKELWHEFRPLF-EGISFIAAHNASFDSSVMRACCDTYRIVPPG-APYLCTV 137

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            +AR+       +L S+C   G+ + H   H AL D+   +++
Sbjct: 138 KLARQTWQLRPANLPSVCAYLGLHLEH---HNALSDAEACANI 177


>gi|330983214|gb|EGH81317.1| ribonuclease T [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 171

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 15/136 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +S  D ++EI AV + +D   +     T+   + P  G      AL+  G
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92

Query: 65  I-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114
           I  D  L+    ++ + + IF            + A  + HNA FD+GF+NA + R++  
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 115 KDPLDPSRIIDTLSIA 130
           ++P  P    DT ++A
Sbjct: 153 RNPFHPFSSFDTATLA 168


>gi|330505789|ref|YP_004382658.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
 gi|328920075|gb|AEB60906.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
          Length = 235

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 21/135 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--------KNSPEALK 61
           +  D+ETTGLD     I+ +G V +          Q   C   R        + S E++ 
Sbjct: 46  VALDVETTGLDPHQHAIVSLGLVPM--------DLQRIRCAEARYWVVKPTSELSAESVT 97

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDP 120
            H IT   ++  P  +S+  E  +    +    +AH  K +  F++  L+  + +  + P
Sbjct: 98  FHHITHSDIRHAPRLASVLDELLEALAGKVV--VAHYRKIERNFLDQALRLHLGEGLMFP 155

Query: 121 SRIIDTLSIARRKHP 135
             IIDT+ +  R HP
Sbjct: 156 --IIDTMELEARLHP 168


>gi|325068103|ref|ZP_08126776.1| Exonuclease RNase T and DNA polymerase III [Actinomyces oris K20]
          Length = 260

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 82/217 (37%), Gaps = 45/217 (20%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNR-------TFQVFLCPNGRKNSPEALKLHG 64
           FD ETTG+D   DR++    V    +  T R       +   +L   G +    A  +HG
Sbjct: 28  FDTETTGVDPSGDRLVTAALV----WRATPRADGVRPQSVATWLADPGVEIPEAAAAVHG 83

Query: 65  ITDEFLK-DKPSFSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRIN------ 114
           +T E  + +    + + +E  +   E  A     +A NA +D+  + AEL R        
Sbjct: 84  VTTERARAEGRPVTEVLAEVSEHLVEAMAAGTPVVAFNASYDLTLMEAELARHGLPTMRS 143

Query: 115 ---------KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
                     DPL   R +D     +R+       L  LC+ YG+ +   + H A +D  
Sbjct: 144 RLGRELGPIADPLVLDRAVDRYRRGKRR-------LGDLCEVYGVHVDE-ALHTAEVDVA 195

Query: 166 LLSDVYIKMMVGGSQIN-------FGFKTNEDRFFKE 195
              DV   +     +++         F+    R + E
Sbjct: 196 ATLDVLEALAAAHPKLSEVSPDELVAFQARAHRTWAE 232


>gi|238895034|ref|YP_002919768.1| ribonuclease T [Klebsiella pneumoniae NTUH-K2044]
 gi|238547350|dbj|BAH63701.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 197

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G ++K D ++EI A+ L +D   +   + T    + P  G    PEAL  +G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGF--INAELQRIN 114
           I         + +  +  +IF        E +   A  +AHNA FD  F    AE   + 
Sbjct: 80  INPHDPQRGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139

Query: 115 KDPLDPSRIIDTLSIA 130
           ++P  P    DT +++
Sbjct: 140 RNPFHPFVTFDTAALS 155


>gi|254192262|ref|ZP_04898751.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157987457|gb|EDO95233.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 310

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 60/107 (56%), Gaps = 7/107 (6%)

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+F+ I    ++  + +   ++AHNA FD GF+ AE +R      +P  ++ T+ 
Sbjct: 1   MVRGAPTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGI-AFNPD-VLCTVR 56

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++R   P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 57  LSRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 101


>gi|257792837|ref|YP_003183443.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243]
 gi|257476734|gb|ACV57054.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243]
          Length = 966

 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 9/149 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG    +D + +I A  + +  +    F  F+ P G+    +   L  I D  
Sbjct: 11  VVLDTETTGFSFNHDELTQIAAARM-EQGEIVEWFITFVNP-GKPIPEDVAHLTDIHDRD 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P  +   ++  +F  +  A+ +AHNA+FD  F     +  +  PL  +  ID+L +
Sbjct: 69  VADAPLPADALAKLVEFIGD--AKVVAHNAEFDRTFTT---RHPSGYPLLENTWIDSLDL 123

Query: 130 ARRKHPSSRND-LNSLCKRYGITIS-HRS 156
           AR   P  ++  L  L + +G  +S HR+
Sbjct: 124 ARIALPRMKSHRLLDLVRAFGAPLSTHRA 152


>gi|68536400|ref|YP_251105.1| DNA polymerase III subunit epsilon [Corynebacterium jeikeium K411]
 gi|68263999|emb|CAI37487.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium K411]
          Length = 227

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 23/152 (15%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D K  RI+    V +    + +      L   G +   +A  +HGIT E+++
Sbjct: 17  FDLETTGVDPKTARIVTSALVTIKGRERNDIE---MLADPGVEIPQQASDVHGITTEYVR 73

Query: 72  DKPS-FSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID-- 125
           +       + ++  +         A  I +NA +D+  + A         L+PS  +D  
Sbjct: 74  EHGQDHGEVLAKTIEGIRAAWRSGATLIVYNAAYDLSVLRA---------LEPSFTVDGP 124

Query: 126 -----TLSIARRKHPSSRNDLNSLCKRYGITI 152
                 +  A+ ++   +  L S+C+ YG+T+
Sbjct: 125 VFDPYVVDRAKDQYRKGKRTLESVCQHYGVTL 156


>gi|46190621|ref|ZP_00121275.2| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bifidobacterium longum DJO10A]
          Length = 211

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 11/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG    +  I EIGAV + +    ++ FQ  + P  R    +   L GITD  
Sbjct: 11  VALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNPL-RPIPRQITTLTGITDAM 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           + D      +   F  +     A       + HN  FD+ F++   + I       +   
Sbjct: 69  VADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACAD-Y 127

Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           DT+ I+R   P+ R+  L  L  R+G  I+   +H AL D+
Sbjct: 128 DTMQISRALFPAQRHHRLADLIVRFG--IADNEEHRALSDA 166


>gi|87302291|ref|ZP_01085116.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH
           5701]
 gi|87283216|gb|EAQ75172.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH
           5701]
          Length = 297

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 18/169 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R ++ D ETTGLD + D  IE+GAV L   S      Q+ L    + N+ EA  ++GI  
Sbjct: 66  RLLILDTETTGLDPERDHCIEVGAV-LFHVSSRAVLSQLSLLLPCQSNTAEA--INGIDA 122

Query: 68  EFLK-DKPSFSSIFSEFWDFFNEQNAEW---IAHNAKFD-VGFINAELQRINKDPLDPSR 122
              + ++P  + +      +F E  A     +AHNA FD   F    L  I+K  L    
Sbjct: 123 AVSRLEQPWQAGLL-----YFQELVASADVIVAHNAAFDRAWFGRGPLPAIDKPWLC--- 174

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +D L     +   +   +  L   YGI +   + H AL D   L+ V+
Sbjct: 175 SMDDLRWPSERRLKATPSVRDLALAYGIPVW--AAHRALTDCIYLAQVF 221


>gi|156392522|ref|XP_001636097.1| predicted protein [Nematostella vectensis]
 gi|156223197|gb|EDO44034.1| predicted protein [Nematostella vectensis]
          Length = 461

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 35/196 (17%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD ETTGLD+ ND II++           +     ++ P GR    EA   HGI++ F
Sbjct: 157 VMFDTETTGLDTSNDVIIQLACAS----ENGDPLHSRYMFPGGRSIGSEATNAHGISEAF 212

Query: 70  -------LKDKPSFSSIFS------EFWDFFNEQNAE------WIAHNA-KFDVGFINAE 109
                  LKD    + + S      EF  F     ++       +AH    FD   +   
Sbjct: 213 IDGSRVLLKDGRPLADVASQKDGLREFIAFLKMHQSQSPKRLCLVAHYGDSFDFRLLINC 272

Query: 110 LQR---INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS--------KH 158
           L+R   +N+     S ++D++ + R      ++  +S  K+  ++  H           H
Sbjct: 273 LKRHNLMNEFISTGSVLLDSVKVVRASKKQEKSPFDSSFKKESLSALHGHLFGVPIDRPH 332

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+  LS V +K+
Sbjct: 333 DAQADACALSKVLMKI 348


>gi|124002773|ref|ZP_01687625.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134]
 gi|123992001|gb|EAY31388.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134]
          Length = 270

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 8/131 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           + FD+ETTG +   DRI+E   ++ L   +  +  +     N     P E+  +HGI DE
Sbjct: 12  VFFDLETTGTNIAKDRIVEWAFIKALPNGEIEKDVKKI---NPEMPIPIESSLVHGIYDE 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-PLDPSRIIDT 126
            +KD P+F SI      F   +  +   +N  +FDV  +  E  R+  D  ++  +++D 
Sbjct: 69  HVKDAPTFKSIAKNLVKFL--EGCDLAGYNIVRFDVPVLVEEFLRVGVDFSVNNRKLVDA 126

Query: 127 LSIARRKHPSS 137
             I     P +
Sbjct: 127 QKIFFMMEPRT 137


>gi|325963798|ref|YP_004241704.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469885|gb|ADX73570.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 334

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 5/115 (4%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI  E +  KP F  +F E   F  +      AHNA FD+G I + L+ ++  P  
Sbjct: 53  VRIHGIRPEHVAGKPRFGELFPEIGAFIGDDI--LAAHNAAFDLGVIRSGLE-VSGLPGP 109

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               + T+ ++RR +    N L    +  G+ +   + H A  D+   + + I +
Sbjct: 110 AYDYVCTVMLSRRCYSLVSNSLPFAAEEAGVPLV--NHHDAAEDARACAGILIDI 162


>gi|33867257|ref|NP_898815.1| putative exonuclease X [Rhodococcus erythropolis]
 gi|33669091|gb|AAP74085.1| putative exonuclease X [Rhodococcus erythropolis]
          Length = 201

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 34/192 (17%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + D+ET+GL+     IIE   V ++D +         +     +  P+A  +H IT  
Sbjct: 30  ACILDVETSGLEGS---IIE---VAVIDAASGAVLLDTLVDCGPVQIEPDAHAVHSITAA 83

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-- 126
            L D P +  +F++     + +    +A+NA+FD G +   L   ++  +DP  + +   
Sbjct: 84  DLDDAPRWPEVFAQLAAITSGRQV--LAYNAQFDQGRV---LHDCHRSGIDPGHLAEAGR 138

Query: 127 --LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-----YIKMMVGGS 179
               +ARR            C   G+    R + G       L+DV      ++++  G 
Sbjct: 139 WQCVMARR------------CAALGLGAEGRVRLGG--GHRALADVRATRALVQLLAAGL 184

Query: 180 QINFGFKTNEDR 191
               G    EDR
Sbjct: 185 PDAAGLAALEDR 196


>gi|226364575|ref|YP_002782357.1| DNA polymerase III subunit epsilon [Rhodococcus opacus B4]
 gi|226243064|dbj|BAH53412.1| putative exonuclease [Rhodococcus opacus B4]
          Length = 247

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 17/153 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV---FLCPNGRKNSPEALKLHGIT 66
             FD+ETTG D  + RI+      +  +   +RT+ +      P G      A  +HGI+
Sbjct: 10  CAFDLETTGPDPTDARIVSACIAVVDAHHFESRTWLLDPEVPIPQG------ASDVHGIS 63

Query: 67  DEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            E+ +         +  I    +D +   +A  +A NA +D+  ++ E  R+    L   
Sbjct: 64  TEYARAHGQDYATGYREIRDALYDAWTRDHAV-VAFNASYDLTVMHTEGLRLGLPELVHG 122

Query: 122 RIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
            ++D   I R   ++   R  L ++C+ YGI +
Sbjct: 123 IVVDPYVIDREMDRYRKGRRTLGAVCEHYGIAL 155


>gi|311745409|ref|ZP_07719194.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1]
 gi|126577956|gb|EAZ82176.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1]
          Length = 223

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 18/167 (10%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +++  +V D ETTGL+   D I+  GAV++ D      T   +   + +K+  + + +HG
Sbjct: 35  DQLSFVVLDTETTGLNPSVDHILSFGAVKIEDQMIQISTGVEWYLKSSKKDF-KTIPVHG 93

Query: 65  -ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I +E       F+    E++     +N   + H+  FD+  +   L+    D +  ++ 
Sbjct: 94  LIGNEEAVPLEQFAKRVLEYF-----ENNILVGHHLGFDLEMLEKALKPFGLDKIQ-NKC 147

Query: 124 IDTLSIA-RRKHP--SSRN-------DLNSLCKRYGITISHRSKHGA 160
           IDT+S+A R  H   + RN        L+SLC+RY I    R   G 
Sbjct: 148 IDTMSLAIRLDHGLMADRNYIDFKDYSLDSLCQRYDIKTDDRHTAGG 194


>gi|229014710|ref|ZP_04171818.1| exonuclease [Bacillus mycoides DSM 2048]
 gi|228746575|gb|EEL96470.1| exonuclease [Bacillus mycoides DSM 2048]
          Length = 181

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           ++ D ETTGL  + D+II+I  + L      N   +  +      N P EA  +HGIT+E
Sbjct: 26  VILDTETTGLTLR-DQIIDISVINLSGKILLNSLVKPTI------NIPAEAASIHGITNE 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
            +   PS+++I+ E  +         + +NA+FD+G I
Sbjct: 79  MVHGAPSWTAIYKELREV--TVGKTLLIYNAEFDLGMI 114


>gi|190895636|ref|YP_001985928.1| DNA polymerase III subunit epsilon [Rhizobium etli CIAT 652]
 gi|190699581|gb|ACE93665.1| probable polymerase protein, epsilon subunit [Rhizobium etli CIAT
           652]
          Length = 326

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 49/107 (45%), Gaps = 16/107 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+ ++D IIEIGAV     D         ++  L    R   PE  +L GI
Sbjct: 75  VVLDTETTGLNHRSDEIIEIGAVAFTFDDDGSIGDIVGIYGGLQQPSRPIPPEVTRLTGI 134

Query: 66  TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           TD  ++    D  S S +  E  D         IAHNA FD  F  A
Sbjct: 135 TDAMVEGQVIDIRSLSDLI-EPADLI-------IAHNAGFDRPFCEA 173


>gi|330799210|ref|XP_003287640.1| hypothetical protein DICPUDRAFT_151766 [Dictyostelium purpureum]
 gi|325082367|gb|EGC35851.1| hypothetical protein DICPUDRAFT_151766 [Dictyostelium purpureum]
          Length = 557

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 13/152 (8%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D ETTGL    D I EI  ++L D S     F   + P    +S  A  +HG T++ L  
Sbjct: 286 DTETTGLSVATDEITEISIIDLYDGSH----FYKLINPTTTVSSASA-SIHGHTNKSLAG 340

Query: 73  KPSFSSI---FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDPSRI-IDT 126
              +  I     E+   + +  A  IAHN KFD G + +++ +   +   + PS + +D+
Sbjct: 341 NEYWCDIEPSLIEYLSKYQKSGAYIIAHNEKFDRGILASQIGKNAASVPSMFPSIVFVDS 400

Query: 127 LSIARR--KHPSSRNDLNSLCKRYGITISHRS 156
           + I +R  K       ++SL   Y I  S +S
Sbjct: 401 IPIFKRFVKKLEGGYSMSSLIDHYQIPKSDKS 432


>gi|86144205|ref|ZP_01062541.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Leeuwenhoekiella blandensis MED217]
 gi|85829335|gb|EAQ47801.1| probable DNA-directed DNA polymerase III  (epsilon subunit)
           [Leeuwenhoekiella blandensis MED217]
          Length = 458

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 9/154 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTG     + + E+ A+   D  K    F   + P  R      + L GI +  L
Sbjct: 4   ILDLETTGGKYNEEGVTEV-AIYKFDGHKVVDQFISLVNPE-RPIQAFVVGLTGINNAML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ P F  +     +    Q+   +AHNA+FD   +  E  R+  D    S  + T+ +A
Sbjct: 62  RNAPKFYEVAKRIIEI--TQDCIIVAHNAQFDYRILQLEFDRLGYDYQRKS--LCTVELA 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGAL 161
           +   P   +  L  L +  GI I+  HR+   AL
Sbjct: 118 QELLPGQESYSLGKLVRNLGIPITDRHRANGDAL 151


>gi|218709246|ref|YP_002416867.1| putative exonuclease [Vibrio splendidus LGP32]
 gi|218322265|emb|CAV18390.1| putative exonuclease [Vibrio splendidus LGP32]
          Length = 238

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 15/186 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D+ETTGLDS+ D I+ +G V+++       + +     N  + + E   ++ IT + 
Sbjct: 52  IVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAKHIYLDNDSQINAETAVINHITPQM 111

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L++    +SI      FF     + I AH    +  FI+  L R       P   +DTL 
Sbjct: 112 LEEG---ASIHDAMLTFFEAAKGKIIVAHACVVEEKFISQYLLRCYGLRAIPLLWLDTLC 168

Query: 129 IARRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGS 179
           I +    +  N       L    +RYG  +   + H AL D+   +++++   K +V   
Sbjct: 169 IEKSMEKAISNHEEVDLTLAGTRERYG--LPEYNSHNALADAVSTAELFLAQQKRVVPND 226

Query: 180 QINFGF 185
           ++   F
Sbjct: 227 EVTLSF 232


>gi|302519905|ref|ZP_07272247.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
 gi|302428800|gb|EFL00616.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
          Length = 270

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 20/192 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M + +  R   FD+ET+G+D + DRI+   A   L   +        L P G +    A 
Sbjct: 1   MTQWHLGRLCAFDLETSGVDVEADRIVTAAAYG-LGGGEPVEPHDWMLDP-GVEIPAGAT 58

Query: 61  KLHGI-TDEF-LKDKPSFSSI--FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ----- 111
            +HGI TDE   K +P+   I   S+    +       + HN  +D   ++ E +     
Sbjct: 59  AVHGITTDEARAKGEPAPGGIDHISDVLAEYARAGVAVVGHNVPYDFTLLDRECRRYELP 118

Query: 112 ----RINKDPLD--PSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALL 162
               R+ + PL    +R++D  +   R+ PS       L +L + Y +       HGA  
Sbjct: 119 TLHDRLGETPLYVIDTRVLDQHADPYRRRPSKDQGARQLVTLAQVYELPWDDEGAHGAAY 178

Query: 163 DSHLLSDVYIKM 174
           D+ L + V  ++
Sbjct: 179 DAVLAARVAYRI 190


>gi|300934269|ref|ZP_07149525.1| DNA polymerase III subunit epsilon [Corynebacterium resistens DSM
           45100]
          Length = 225

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 18/178 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +  D+ETTGLDS+ DR++ IG + +    +D S         +     +   E+  +HG+
Sbjct: 44  LAVDVETTGLDSRKDRLLSIGWIPVDGHEIDLSGAGYG---VIEQETHETVGESATIHGL 100

Query: 66  TDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           TD+ + ++  +   + +        +    + H  K +  FI+   Q      L  ++ +
Sbjct: 101 TDDHVHREGEAAPEVLARLLQAL--RGRAMLVHYKKVESTFISDACQDHFGTGLK-AQYV 157

Query: 125 DTLSIARR------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           DTL +ARR       HP   +DL     R  + +     H AL D+   ++VY+ ++ 
Sbjct: 158 DTLELARRFIEDGGGHPKG-DDLRLARIRERLELPSYHNHNALTDALACAEVYLALIA 214


>gi|259508093|ref|ZP_05750993.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
 gi|259164316|gb|EEW48870.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
          Length = 385

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 5/107 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +   I+++G+     R+I   A+ L   ++   TF   L P    + P    LHG+TDE 
Sbjct: 57  VAVTIQSSGIHPSTSRMITFTAITLTADNEPVETFHAVLNPG---SDPGPFHLHGVTDEE 113

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            +    FS I        + +    I HNA    GFI +E +R   D
Sbjct: 114 FRSARRFSQILKAVDRLIDGRT--LILHNAPRTWGFIVSEAKRAMND 158


>gi|292669904|ref|ZP_06603330.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648701|gb|EFF66673.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 219

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 7  MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
          M+ IV D+E   +  +        N  IIEIGAV L +  +    FQ ++CP        
Sbjct: 1  MKHIVVDLEMNPVSKEYREVRRKLNGEIIEIGAVRLNENYEQEDEFQCYVCPEYGMVKKH 60

Query: 59 ALKLHGITDEFLKDKPSFSSIFSEF 83
            +L GIT E ++  P+FS  F  F
Sbjct: 61 ITELTGITQEKVEGHPAFSDSFHSF 85


>gi|332882730|ref|ZP_08450341.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332679232|gb|EGJ52218.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 442

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 9/154 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG     + I EI A+   D  +    F   + P  R       KL GI ++ L
Sbjct: 4   ILDIETTGGKYDEEGITEI-AIYRFDGHELTDQFISLINPE-RPIQDFVTKLTGINNKML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ P F  +     +    Q+   + HNA FD   +  E +R+  D +  +  + T+ ++
Sbjct: 62  RNAPKFYEVAKRIVEI--TQDTIIVGHNAAFDYRILQTEFRRLGYDYIRTT--LCTVELS 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGAL 161
           ++  P   +  L  L +  GI +S  HR+   AL
Sbjct: 118 QQLLPEKESYSLGKLVRSLGIPMSERHRASGDAL 151


>gi|328469916|gb|EGF40827.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 10329]
          Length = 236

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 12/166 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTG+D++ D+I+ IG V+L LD      + + ++C +G+   PE  +++G+T +
Sbjct: 53  VALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYIC-HGQFIKPETAQINGLTPQ 111

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L          +   +    +    +AH    +  FI+A      +    P+  +DTL 
Sbjct: 112 DLAKGLPLDEGMNRLLERITGKVV--LAHGCCIEKAFIHAYFSSRYQVEDFPAYFVDTLQ 169

Query: 129 I------ARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHL 166
           I      A +    S   L+ L + Y +   +SH +   AL  + L
Sbjct: 170 IEKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAEL 215


>gi|260887789|ref|ZP_05899052.1| exonuclease [Selenomonas sputigena ATCC 35185]
 gi|260862465|gb|EEX76965.1| exonuclease [Selenomonas sputigena ATCC 35185]
          Length = 202

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 14/169 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET       +    +  VE+ D  +    +   + P G +     + +HGI+
Sbjct: 18  MNYIAIDFETA--TGSMNSACSVATVEVRD-GQLKEGWTTLIQPPGLRFDSFNIGIHGIS 74

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            + + D P+F+    E W+   E+ A    +AHNA FD+G + A L   N+      R  
Sbjct: 75  PKDVTDAPTFA----EVWEELKERLAGKIVVAHNASFDMGVLKASLLA-NRLQAPYFRTC 129

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            T+ IAR+  P+   + LN++     I   H   H AL D+   + + +
Sbjct: 130 CTVRIARKVWPALDDHKLNTVGAHLNINFRH---HRALDDARTCAAILL 175


>gi|300024532|ref|YP_003757143.1| exonuclease RNase T and DNA polymerase III [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526353|gb|ADJ24822.1| Exonuclease RNase T and DNA polymerase III [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 225

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 15/180 (8%)

Query: 5   NKMRKIVF-DIETTGL------DSKNDRIIEIG----AVELLDYSKTNRTFQVFLCPNGR 53
             +++I+F D ETTGL         +DR+I IG        L        F  F+    +
Sbjct: 19  GSLQRILFVDTETTGLRRPSAASEDHDRVISIGFFDTDASALQAGFCRGKFGYFIFNPQQ 78

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
            ++  A ++HG +D  L  + +F+S     +  F   +   ++HN  FD  F+ +E    
Sbjct: 79  ASAAGARRVHGYSDRILAQQDTFASCADMLFPAFGSADL-IVSHNTDFDRPFVESEFAGA 137

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +     S        A R        L++   R GI      +HGAL D+ L   +Y+ 
Sbjct: 138 GRSLRGKS--WHCTMQAERARGGGSASLDASIDRLGIQ-RQSGRHGALEDAWLAMMLYLA 194


>gi|319948216|ref|ZP_08022374.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4]
 gi|319438119|gb|EFV93081.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4]
          Length = 240

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 12/135 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS----PEA 59
           +++R +  D+ETTGLD + DR++ +G V +  D         + L  +GR        ++
Sbjct: 41  DEVRLLAVDVETTGLDPRRDRVVSVGFVPVDGDRIVLRGAGSMVLRSDGRSGDDGGVGQS 100

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDP 117
             +HG+TD+ +      + +          +    +AH +  +V F+    +R+   + P
Sbjct: 101 ATVHGLTDDDVAHGSGVAEVLDRVLTALTGRV--LLAHYSTIEVDFLGVLCRRVYGVRPP 158

Query: 118 LDPSRIIDTLSIARR 132
           L+    +DTL + RR
Sbjct: 159 LE---AVDTLELQRR 170


>gi|115375897|ref|ZP_01463146.1| DNA polymerase III PolC-type, putative [Stigmatella aurantiaca
           DW4/3-1]
 gi|310819816|ref|YP_003952174.1| exonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|115367075|gb|EAU66061.1| DNA polymerase III PolC-type, putative [Stigmatella aurantiaca
           DW4/3-1]
 gi|309392888|gb|ADO70347.1| Exonuclease [Stigmatella aurantiaca DW4/3-1]
          Length = 219

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 17/179 (9%)

Query: 8   RKIVF-DIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNS-PEALKLHG 64
           R + F D+ETTGLD+    ++E+  + +   S K    ++  + P    ++ PEAL + G
Sbjct: 29  RTLAFIDLETTGLDASRHEVLEVAILRVDARSLKVLAEYEARVQPTRLADAHPEALAVCG 88

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--- 121
            +DE  +D      + +               HN  FD GF+  E  R  + PL PS   
Sbjct: 89  YSDEEWRDALPLREVLATVTPLLAGTLVA--GHNTSFDWGFL-VEGYRSTELPL-PSVDY 144

Query: 122 RIIDTLSIARRKHPSSRND---LNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKMMV 176
             +DT S+A     +   +   LN+L K +G+   HR + H A+ D+    +V  ++ V
Sbjct: 145 HRLDTASLAWPLLATGEVESLSLNALAKHFGL---HRPTPHRAMADARCALEVARRLAV 200


>gi|322373090|ref|ZP_08047626.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C150]
 gi|321278132|gb|EFX55201.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C150]
          Length = 828

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  KN  +  + D+E T   S    II++G V ++   +    F   + P+ +K     +
Sbjct: 1   MSEKNTNKYAIVDLEAT-FASSMASIIQVGIV-IMQNGQVIDEFASDVNPH-QKLDDHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I  + +D    ++  ++AHN KFD   ++  L     +   P
Sbjct: 58  HLTGITDQQLAQAPDFSEIARKIFDLI--EDCIFVAHNVKFDANLLSEALFMEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DT+ +A+  +P+  +  L+ L K   + ++    H A+ D+     +   +M
Sbjct: 116 R--VDTVELAQVFYPTLEHYKLSHLSKVLNLDLAQ--AHTAIEDARATGQLLFHLM 167


>gi|307106672|gb|EFN54917.1| hypothetical protein CHLNCDRAFT_134628 [Chlorella variabilis]
          Length = 786

 Score = 45.8 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 11/128 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDE 68
           + FD+ET+GL  K   I E GAV     +    TF  ++C P G    PEA K  G+T E
Sbjct: 30  VAFDLETSGL-GKKACITEFGAVG----AGGTATFHEYVCLPPGVVMDPEATKTTGLTAE 84

Query: 69  FLKD--KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIID 125
           FL +  +P F   +  F  F  +Q  + ++H A  D       LQ + +D L  P+  ++
Sbjct: 85  FLAENGRP-FEEAYPRFVSFLRQQRPD-VSHRAVEDCRSNLLVLQHLLRDLLQLPADAVE 142

Query: 126 TLSIARRK 133
            +   +R+
Sbjct: 143 AVEEVQRE 150


>gi|254525958|ref|ZP_05138010.1| exonuclease [Prochlorococcus marinus str. MIT 9202]
 gi|221537382|gb|EEE39835.1| exonuclease [Prochlorococcus marinus str. MIT 9202]
          Length = 259

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 25/177 (14%)

Query: 6   KMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLH 63
           K+ KI + D ETTGLD   D +IEIG + L D S      QV FL P    N+ EA  ++
Sbjct: 34  KIEKILILDTETTGLDENKDEVIEIGCI-LFDVSFKCVLSQVSFLFP---VNNNEAEHVN 89

Query: 64  GITDEF------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKD 116
           GI+ +        +D  +F     ++ DF        +AHN +FD   F    L ++NK 
Sbjct: 90  GISADVTNISQPWEDGLNFFLKLVDYSDFI-------VAHNVEFDKKWFGKGRLPKLNKK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +     ++ ++ + +K   SR  +  L   + I + +   H AL D   +S+V+ K
Sbjct: 143 WICS---LEDINWSFQKSLKSRPSVTDLALSFSIPVWNL--HRALSDCFYISEVFKK 194


>gi|322419698|ref|YP_004198921.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M18]
 gi|320126085|gb|ADW13645.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M18]
          Length = 314

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 11/114 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           I  D ETTGL+ K D++IE+G V         +  + +  +  F  P G    PE  ++ 
Sbjct: 57  ICLDTETTGLNHKEDKVIELGIVAFEFDPLSGEIYRISDRYSGFEDP-GFPIPPEVREIT 115

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           GI+DE ++ + +F   F    D    +    IAHNA FD  F+        K P
Sbjct: 116 GISDEMVRGQ-AFDDAFV---DLLAGKADLVIAHNAAFDRKFVETRFPAFKKLP 165


>gi|325858421|ref|ZP_08172583.1| exonuclease [Prevotella denticola CRIS 18C-A]
 gi|325483059|gb|EGC86047.1| exonuclease [Prevotella denticola CRIS 18C-A]
          Length = 178

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 10/164 (6%)

Query: 5   NKMRKIVFDIETTGLDSKN---DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           N +++I+ +      ++ N     +  +G V ++   +   TF   + P          +
Sbjct: 10  NALQEIMQNFAAIDFETANFERSSVCSVGVV-IVRGGEVADTFYSLVHPEPNYYQWRCTQ 68

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG+T E     P FS +++        +    +AHNA FD G + A  Q    D  D  
Sbjct: 69  VHGLTREDTDGAPVFSKVWARIEPLI--EGLPLVAHNAPFDKGCLRACFQTYRMDYPD-Y 125

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
             +DTL  ARR  P  S + L+++    G  +S    H AL D+
Sbjct: 126 EFLDTLRAARRVFPHLSNHQLHTVSAACGYDLS--RHHHALADA 167


>gi|330838686|ref|YP_004413266.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena
           ATCC 35185]
 gi|329746450|gb|AEB99806.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena
           ATCC 35185]
          Length = 186

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 14/169 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET       +    +  VE+ D  +    +   + P G +     + +HGI+
Sbjct: 2   MNYIAIDFETA--TGSMNSACSVATVEVRD-GQLKEGWTTLIQPPGLRFDSFNIGIHGIS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            + + D P+F+    E W+   E+ A    +AHNA FD+G + A L   N+      R  
Sbjct: 59  PKDVTDAPTFA----EVWEELKERLAGKIVVAHNASFDMGVLKASLLA-NRLQAPYFRTC 113

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            T+ IAR+  P+   + LN++     I   H   H AL D+   + + +
Sbjct: 114 CTVRIARKVWPALDDHKLNTVGAHLNINFRH---HRALDDARTCAAILL 159


>gi|225868805|ref|YP_002744753.1| ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702081|emb|CAW99711.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 821

 Score = 45.4 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 83/176 (47%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI +   +  V D+E T        II++G V +++  +   ++Q  + P+    S    
Sbjct: 1   MINEFSQKYAVIDLEATS-PGPTASIIQVGIV-IIEGKEIVDSYQTDVNPH-EPLSDHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS +    ++    ++  ++AHN  FD   +   L     D L P
Sbjct: 58  ALTGITDQQLAQAPDFSQVARTIFELI--EDCVFVAHNVTFDANLLAEALFLEGYDLLTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DT+ +A+  +P   +  L+ L +   + +S    H A+ D+   ++++IK++
Sbjct: 116 R--VDTVELAQIFYPCLEKYSLSHLSEVLDLNLS--DAHTAIADAQATANLFIKLL 167


>gi|116255734|ref|YP_771567.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260382|emb|CAK03486.1| putative exonuclease/polymerase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 326

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 49/107 (45%), Gaps = 16/107 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+ +ND IIEIGAV     D         ++  L    R   PE  +L GI
Sbjct: 75  VILDTETTGLNHRNDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIPPEITRLTGI 134

Query: 66  TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           TD  ++    D  S  ++  E  D         IAHNA FD  F  A
Sbjct: 135 TDAMVEGQLIDIQSLRTLI-EPADLI-------IAHNAGFDRPFCEA 173


>gi|221069684|ref|ZP_03545789.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
 gi|220714707|gb|EED70075.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
          Length = 213

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+  ++  R  E+ A+ LL+  +    FQ  +   G   SP   +L GIT+  
Sbjct: 7   VIDFETTGMTPAQGARATEV-AIVLLEQGRVVDRFQSLM-QAGAWVSPFITELTGITNAM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+  P  + +  +   F     A  +AHNA FD  F  AEL    +    P     T+ +
Sbjct: 65  LRTAPPAAEVMRDAARFVG--GAPMVAHNASFDSKFWQAELALAGEA--APQLFACTVLL 120

Query: 130 ARRKHPSS 137
           +RR +P +
Sbjct: 121 SRRIYPQA 128


>gi|120553208|ref|YP_957559.1| DNA polymerase III subunit epsilon [Marinobacter aquaeolei VT8]
 gi|120323057|gb|ABM17372.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
          Length = 240

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 25/172 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL++    I+ IG V   L   +  + +   + P    +   ++ +HGIT  
Sbjct: 51  VALDFETTGLEADQHSIVSIGLVPFTLTGIQLGQCWHQVVRPRLPLHK-TSVTIHGITHS 109

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTL 127
            +++ P    +    ++  N +    + H    +  F+N  LQ R+N+    P  +IDT+
Sbjct: 110 EIENAPDLEDVLDPLFEHLNGRIP--VVHYRNIERPFLNTALQWRLNEQLRFP--VIDTM 165

Query: 128 SIARRKHPSSRND---------------LNSLCKRYGITISHRSKHGALLDS 164
           +I    HP +RN                L     RYG  + H + H AL+D+
Sbjct: 166 AIEAHLHP-NRNPSRWQQLMGKKPISIRLADSRLRYG--LPHYASHNALIDA 214


>gi|264676215|ref|YP_003276121.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2]
 gi|262206727|gb|ACY30825.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2]
          Length = 214

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+  ++  R  E+ A+ LL+  +    FQ  +   G   SP   +L GIT+  
Sbjct: 8   VIDFETTGMTPAQGARATEV-AIVLLEQGRVVDRFQSLM-QTGAWVSPFITELTGITNAM 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+  P  + +  +   F     A  +AHNA FD  F  AEL    +    P     T+ +
Sbjct: 66  LRTAPPAAEVMRDAARFVGA--APMVAHNASFDSKFWQAELALAGEA--APQLFACTVLL 121

Query: 130 ARRKHPSS 137
           +RR +P +
Sbjct: 122 SRRIYPQA 129


>gi|146096896|ref|XP_001467969.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania
           infantum JPCM5]
 gi|134072335|emb|CAM71041.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania
           infantum JPCM5]
          Length = 188

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 35/179 (19%)

Query: 29  IGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87
            GA+E L +++  R F  ++ P+  R+ S  A  +HGIT E ++    ++   SE   + 
Sbjct: 2   CGAIEGL-WTRGGRVFHRYVRPSDPRRISAAAAAVHGITWETVQHCSPWTVAASELVAYM 60

Query: 88  NEQNAE------------------------WIAHNAKFDVGFINAELQRINKD----PLD 119
               A+                         +AHNA FD  F+   L+R        P  
Sbjct: 61  TLVGADAPVSASAQLEAAQLGGDRAVRLPPLVAHNASFDARFLEHHLRRCGYQIFWHPQY 120

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH---RSKHGALLDSHLLSDVYIKMM 175
           P  +  T   A+  +P   N+L++LC    I  +     + HGAL D+ L + ++++M 
Sbjct: 121 P--LTCTRQWAQVAYPHLANNLDALCAFLSIDGAADRVANGHGALTDATLTALLFLQMC 177


>gi|327194608|gb|EGE61458.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli
           CNPAF512]
          Length = 224

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 7/154 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           IR   ++ I  D ET   + +      +G +  +D  +  R  +  + P   + S   + 
Sbjct: 24  IRYAALKTIAIDFETA--NEQRGSACSVG-LAWIDEGRVTRVEERLIRPRDMRFSGMNIA 80

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI  E ++D P F  +  EF +  +   A  IAHNA FD     A L  + +      
Sbjct: 81  IHGIRPEHVEDAPEFPEVMDEFHE--DISGATMIAHNAAFDFSVWRASLD-LYRQSYPEL 137

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISH 154
             + +L +A+R  P    + LN + +  G+   H
Sbjct: 138 TYLCSLKMAQRIWPHFLSHRLNLIAEHLGLRFMH 171


>gi|256851438|ref|ZP_05556827.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 27-2-CHN]
 gi|260660859|ref|ZP_05861774.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 115-3-CHN]
 gi|282933112|ref|ZP_06338499.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
 gi|297206253|ref|ZP_06923648.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           jensenii JV-V16]
 gi|256616500|gb|EEU21688.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 27-2-CHN]
 gi|260548581|gb|EEX24556.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 115-3-CHN]
 gi|281302616|gb|EFA94831.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
 gi|297149379|gb|EFH29677.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           jensenii JV-V16]
          Length = 177

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 7/116 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++H IT + +KD P+ + ++ +    + +      AHNA+FD   +   L R + D  +
Sbjct: 50  IQVHQITPDDVKDAPTMAEVWPKIKALY-QPGMLVAAHNARFDANVLKMSLARYDID--E 106

Query: 120 PSR-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           P   +IDTL  +R   P   N  LN++ +   + + H   H AL DS   + + IK
Sbjct: 107 PHYLVIDTLKTSRLFEPDLPNHKLNTVAEALDVELWHH--HNALSDSEACAGILIK 160


>gi|213964476|ref|ZP_03392676.1| DNA polymerase III epsilon subunit [Corynebacterium amycolatum
           SK46]
 gi|213952669|gb|EEB64051.1| DNA polymerase III epsilon subunit [Corynebacterium amycolatum
           SK46]
          Length = 195

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 12/150 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  D+ETTGLD   D+++ IG  AVE  D         +        +  E+  +HG+TD
Sbjct: 22  LAVDVETTGLDPSKDQLLSIGWVAVEGRDIVLEESGHLIIRPEREEVSVGESATVHGLTD 81

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +           +  +    +    +AH A+ +VGF++   ++      D   + DT+
Sbjct: 82  DMVATGVEAEVAVGKLLEALRGRKL--LAHYARMEVGFLDPLCRKYFDARFDVP-VADTM 138

Query: 128 -----SIARRKHPSSRNDLN--SLCKRYGI 150
                +I R      R++L   SLC +YGI
Sbjct: 139 TREYDAILRANREPVRDELRLWSLCDKYGI 168


>gi|239948068|ref|ZP_04699821.1| DNA polymerase III subunit epsilon [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922344|gb|EER22368.1| DNA polymerase III subunit epsilon [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 251

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 15/165 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-----SPEALKLHG 64
           +  D ETTGL    D+I+E+G V+  +Y+   R + +    N  ++     +P   +L G
Sbjct: 1   MFLDTETTGLSYVTDKILELGMVK-FEYTNDGRIYNILEEFNQYQDPKEPIAPHITELTG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITDE ++D+    +I  E    F +  +  IAHNA FD  F +     +       +R  
Sbjct: 60  ITDEMVRDQ----NINKEEVINFLQNVSIIIAHNAGFDRPFFDKLFPDLTTKIWGCAR-- 113

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDSHLLS 168
             L I  +        L  L  +Y      HR+    L   HLLS
Sbjct: 114 --LDIDWKYEKIESQKLEYLAYKYNFFYEGHRAVIDCLAGLHLLS 156


>gi|328951319|ref|YP_004368654.1| Exonuclease RNase T and DNA polymerase III [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451643|gb|AEB12544.1| Exonuclease RNase T and DNA polymerase III [Marinithermus
           hydrothermalis DSM 14884]
          Length = 185

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 8/125 (6%)

Query: 7   MRKIVF---DIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSP-EALK 61
           MR++V+   D+ET+GL+ + D+I+ +G V +   + +    F   + P      P   LK
Sbjct: 1   MRRVVYWALDVETSGLNPRRDQILAVGMVPVRGGAVRCREAFYSLVRPPSPAVVPLWGLK 60

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            H I    L+  P  + +  E       +    + H+A  DV F+    + +   P    
Sbjct: 61  AHHIRPVELRGAPPLAEVLREV--DRRLRGGALLVHHAAVDVAFLRRAYRALGW-PWPAP 117

Query: 122 RIIDT 126
           R++DT
Sbjct: 118 RVVDT 122


>gi|288818861|ref|YP_003433209.1| exonuclease [Hydrogenobacter thermophilus TK-6]
 gi|288788261|dbj|BAI70008.1| exonuclease [Hydrogenobacter thermophilus TK-6]
 gi|308752448|gb|ADO45931.1| Exonuclease RNase T and DNA polymerase III [Hydrogenobacter
           thermophilus TK-6]
          Length = 216

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 10/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGLD K D  I IGA+++ D     +++F   + P        ++++HGIT  
Sbjct: 43  VVCDTETTGLDLKKDEPIAIGALKVKDLCIDLSQSFYRLIKPQTPPKR-SSIEVHGITPS 101

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L        +  EF +F   + +  + +    D+  +   L+     P  P   +D L 
Sbjct: 102 DLDIAKEREEVSKEFLEF--SRGSLLVGYFFYIDLVMLKKLLKSFCSVPFVPYS-LDVLD 158

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + + +   S +++ SL       +   S H AL D+++ + V++K++
Sbjct: 159 LYKSEKHISLDEMLSL-----FDLPSSSHHSALEDAYMTALVFLKLI 200


>gi|228473001|ref|ZP_04057758.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275583|gb|EEK14360.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC
           33624]
          Length = 453

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 9/159 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG     + I EI A+   D  K    F   + P  +K     ++L GI+++ +
Sbjct: 4   IIDIETTGGKMGEEAITEI-AIYRFDGQKVTDRFISLINPE-KKIDDFVVRLTGISNKTV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  +     +    ++   +AHNA FD   ++ E +R+  D    +  + T+ ++
Sbjct: 62  RQAPKFYEVAKRIVEI--TEDCILVAHNASFDYRVLSLEFRRLGFDYQRST--LCTVEMS 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHL 166
           +R  P   +  L  L +  GI +   HR+   A+   HL
Sbjct: 118 QRLLPDEPSYSLGKLTRSLGIPLLNRHRANGDAMATVHL 156


>gi|167999243|ref|XP_001752327.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696722|gb|EDQ83060.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1960

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 103/238 (43%), Gaps = 42/238 (17%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDE 68
           IVFDIETTG      +I+E+   ++        T +  + P   +  P A   +H IT E
Sbjct: 252 IVFDIETTGFLKPGSKIVELACRDIA--GGDCSTLETLVNP--YQPVPIASTAVHKITSE 307

Query: 69  FLK--DKPSFSSIFSEFWDFFNEQ---NAEWI--AHNA-KFDVGFINAELQRINKDPLDP 120
            +   D PS++ + + F DF   +   N++ I  AHN  +FDV FI  E    + +    
Sbjct: 308 MVNRDDIPSWTEVMTAFVDFVESRRIGNSDVILVAHNGRRFDVPFIMKECYECSMEIPSH 367

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH---------------RSKHGALLDSH 165
              IDT+ +A+            L KR+G T  +                  H A +D  
Sbjct: 368 WYFIDTIDLAKAM----------LKKRFGKTKLYNLQFLYYDCYKLPRLEDAHRAGVDVD 417

Query: 166 LLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           +L+ V+ K+++   ++        D+ FK     +    LL+ +   +T ++K E+DE
Sbjct: 418 MLASVFGKLLM---ELEMPVSELLDQAFKASHIELKPDLLLRENNDRYTSLSK-EVDE 471


>gi|18466779|ref|NP_569586.1| hypothetical protein HCM2.0114c [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16506095|emb|CAD09981.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
          Length = 185

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 67/164 (40%), Gaps = 5/164 (3%)

Query: 13  DIETTGLD-SKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           DIE+TGLD +   +IIEI      L+  K   + ++   P  R   P+A  +HGI+ E L
Sbjct: 9   DIESTGLDFTSGHKIIEIAITRYELETQKHIDSLEMRFNPR-RSIDPKAQAVHGISLEDL 67

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSI 129
             +P  +    +   +    +A  +AHN + FD+ FI  E         D   +   L  
Sbjct: 68  ATEPLLADHAGKIAAYMGACSA-LVAHNGEAFDLPFIRHEFGSYGVKLPDIPLVDSMLDG 126

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                   R  L  L    G T      H AL D+ L+   + K
Sbjct: 127 LWATEDGKRPRLEELAFSLGFTYDREKAHSALYDTDLMMQCFFK 170


>gi|298708153|emb|CBJ30494.1| ATP-dependent DNA helicase RecG [Ectocarpus siliculosus]
          Length = 1002

 Score = 45.4 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 15/109 (13%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPS-- 75
           GL +K DR+I++ A ++L       +F  F+ P      P   ++ GIT E L    +  
Sbjct: 755 GLRAKEDRVIQLAA-KVLGSENPRHSFAEFVDPGAVGVPPRVREITGITPEILAANGARP 813

Query: 76  FSSIFSEFWDFFN----EQNAE--------WIAHNAKFDVGFINAELQR 112
           F  ++ EF  + +    E+ AE        ++AHNA+FD  F+  E+ R
Sbjct: 814 FPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEEVSR 862


>gi|307565507|ref|ZP_07627990.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii
           CRIS 21A-A]
 gi|307345787|gb|EFN91141.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii
           CRIS 21A-A]
          Length = 183

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 12/184 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N +  I  D ET    +K   I E G + ++   K   T    + P   + S   +++HG
Sbjct: 2   NNINFIAIDFETA--TAKRSSICEAG-ICVVKGGKVVETKSWLVRPEDNRYSYWNIQIHG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I  +     P+F  ++ E   +  +     +AHNA FD+  I   LQ ++  P       
Sbjct: 59  IRPQDTAYAPTFPKVWEEITTYLRDCPV-LVAHNAAFDMSCIRHTLQ-LHHLPCPDIDYY 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG-----S 179
            +L  AR  +    N L+ LC  +  +IS+ + H A  D+ + + ++++ +  G     S
Sbjct: 117 CSLRAARHIYDFGCNTLDYLCDHF--SISYGTHHRAGDDAEMCARLFLQEIKDGNFADVS 174

Query: 180 QINF 183
            +NF
Sbjct: 175 DLNF 178


>gi|255656369|ref|ZP_05401778.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-23m63]
 gi|296450182|ref|ZP_06891943.1| epsilon subunit family exonuclease [Clostridium difficile NAP08]
 gi|296878563|ref|ZP_06902568.1| epsilon subunit family exonuclease [Clostridium difficile NAP07]
 gi|296260945|gb|EFH07779.1| epsilon subunit family exonuclease [Clostridium difficile NAP08]
 gi|296430370|gb|EFH16212.1| epsilon subunit family exonuclease [Clostridium difficile NAP07]
          Length = 168

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 5/159 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGLD      I    +  +   +  + +   + P G  +S    +L  I++E 
Sbjct: 5   VVVDLETTGLDPYKGCEIIEIGITEIKNEQIVKNYSRLIKPKGIISSF-ITELTHISNEM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++++     +   F  +  ++    IAHNAKFD+ F+N  L+ +N +P++       L  
Sbjct: 64  VENEEPLELVLPRFRKYIGDRTI--IAHNAKFDLKFLNYYLRMLNLEPINNYICTVELLK 121

Query: 130 ARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHL 166
             + +      L + C  Y I    +HR+    L  + L
Sbjct: 122 KCKSYKGKNKKLETACAYYNIENINAHRADSDTLATAKL 160


>gi|299531122|ref|ZP_07044534.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
 gi|298720825|gb|EFI61770.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
          Length = 213

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D ETTG+  ++  R  E+ A+ LL+  +    FQ  +   G   SP   +L GIT+  
Sbjct: 7   VIDFETTGMTPAQGARATEV-AIVLLEQGRVVDRFQSLM-QTGAWVSPFITELTGITNAM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+  P  + +  +   F     A  +AHNA FD  F  AEL    +    P     T+ +
Sbjct: 65  LRTAPPAAEVMRDAARFVGA--APMVAHNASFDSKFWQAELALAGEA--APQLFACTVLL 120

Query: 130 ARRKHPSS 137
           +RR +P +
Sbjct: 121 SRRIYPQA 128


>gi|261251373|ref|ZP_05943947.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
 gi|260938246|gb|EEX94234.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
          Length = 239

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 29/174 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF----QVFLCPNGRKNSPEALKLHGI 65
           +  D ETTGLDS ND II IG V        NR F    Q +     ++ + E++ +HGI
Sbjct: 50  LAMDFETTGLDSDNDDIITIGTVPF----NLNRIFINQAQHWTVRPRKQLAEESVVIHGI 105

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   + D P  S I+ +  +  + +    + H  + +  F +  L    K+ ++   ++D
Sbjct: 106 THSDVLDAPDLSGIYEQVLEQMSGKIM--VVHYQRIEREFFDKALMARIKEGIE-FPVVD 162

Query: 126 TLSIARR---------------KHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           T+ I  +               K P+S   L +   RYG  +   + H AL D+
Sbjct: 163 TMHIETQLQQKQSGGLFNKILGKKPASVR-LGASRSRYG--LPQYTPHHALTDA 213


>gi|84386996|ref|ZP_00990019.1| DNA polymerase III, epsilon chain [Vibrio splendidus 12B01]
 gi|84378071|gb|EAP94931.1| DNA polymerase III, epsilon chain [Vibrio splendidus 12B01]
          Length = 238

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 15/186 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D+ETTGLDS+ D I+ +G V+++       + +     N  + + E   ++ IT + 
Sbjct: 52  IVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAKHIYLDNDSQINAETAVINHITPQM 111

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L++    +SI      FF     + I AH    +  FI+  L R       P   +DTL 
Sbjct: 112 LEEG---ASIHDAMLTFFEAAKGKIIVAHACMVEERFISQYLLRCYGLRAIPLLWLDTLC 168

Query: 129 IARRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGS 179
           I +    +  N       L    +RYG  +   + H AL D+   +++++   K +V   
Sbjct: 169 IEKSMEKAISNHEEVDLTLAGTRERYG--LPEYNNHNALADAVSTAELFLAQQKRVVPND 226

Query: 180 QINFGF 185
           ++   F
Sbjct: 227 EVTVAF 232


>gi|260767723|ref|ZP_05876658.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260617232|gb|EEX42416.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
          Length = 222

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 15/171 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIET+GLD+++D I+ IG V +++        + FL     +N P+ + LH I  +  +
Sbjct: 35  LDIETSGLDAEHDHIVSIGWVPIVNQVIRLAEARYFLITPSGQNDPQQVVLHHIMPQMQR 94

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI-- 129
                +        F   +    +AH +  +  FI+  +Q+ +  P  P   +DTL I  
Sbjct: 95  QGIPLAQAIELL--FTQLKGKVLLAHGSVVERQFIHHFMQQ-HGWPDLPIVWLDTLKIEQ 151

Query: 130 -----ARRKHP-SSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                A    P S+ ND  L+++ KRY +       H AL D+   +++Y+
Sbjct: 152 AYAQYAPYNMPHSNANDWRLSTVRKRYHLPA--YQAHHALSDAIATAELYL 200


>gi|255547337|ref|XP_002514726.1| exonuclease, putative [Ricinus communis]
 gi|223546330|gb|EEF47832.1| exonuclease, putative [Ricinus communis]
          Length = 448

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 11/154 (7%)

Query: 12  FDIETT-GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKN---SPEALKLHGIT 66
           FD+ETT   + +   I+E GA+ +   +     T+  F+ P    +   S   L+ +GIT
Sbjct: 17  FDLETTLPGECEGFAILEFGAILVCPRTLVELHTYATFVQPAADPSLIFSSSFLRSNGIT 76

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIID 125
            + +   P+FS I    ++  N +   W  HN  KFD   I      I + P  P  +ID
Sbjct: 77  YDNIVSAPTFSDIADTVYEILNGR--LWAGHNVQKFDSVKIREAFAEIGRQPPVPKGVID 134

Query: 126 TLSIARRKHPSSRNDLN--SLCKRYGIT-ISHRS 156
           T  +   K      D+   SL   +G+   +HRS
Sbjct: 135 TWELLTHKFGRRAGDMKMASLATYFGLGKQTHRS 168


>gi|160689366|gb|ABX45541.1| polymerase C [Bacillus sonorensis]
          Length = 259

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160
           D+GFIN   +++ K     + +IDTL + R  +P  +N  LN+LCK++ I ++    H A
Sbjct: 1   DMGFINVAYKKLLKSEKAQNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQINFGF 185
           + D+     + +KM+   ++ N  +
Sbjct: 59  IYDTEATGYLLVKMLKDAAEKNILY 83


>gi|303233442|ref|ZP_07320110.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Atopobium vaginae PB189-T1-4]
 gi|302480450|gb|EFL43542.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Atopobium vaginae PB189-T1-4]
          Length = 539

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 16/175 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           +  D ETTGL   +D + +I AV+      T  TF  F+ P   K  P  + KL  I + 
Sbjct: 84  VFLDTETTGLSFADDSLTQIAAVKR-RADGTFDTFCTFVHPP--KPIPAHISKLTNIYNA 140

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P           F     A  +AHNA FD  F+   LQ         S  ID+L+
Sbjct: 141 DVAAAPKPKEAVLALAQFVG--GAPIVAHNAAFDKTFVEGVLQHQTVS----STWIDSLA 194

Query: 129 IARRKHPS-SRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +++   PS + + L  L   +G   ++HR+      D   L+DV+  MM    Q+
Sbjct: 195 LSKIAFPSFNTHKLEDLAVLFGCARVTHRADD----DCKALADVWHYMMRALCQL 245


>gi|328881184|emb|CCA54423.1| putative DNA polymerase III [Streptomyces venezuelae ATCC 10712]
          Length = 242

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 21/158 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D + DRI+   A+ + D          +L   G      A  +HG+TD+ L
Sbjct: 12  AFDTETTGVDVEEDRIVS-AALVVQDTVGARPRVTRWLVNPGIPVPEGATAVHGLTDDHL 70

Query: 71  KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR---------INKDP 117
           +    + + +  E      EQ A     +  NA FD+  ++ EL+R         +   P
Sbjct: 71  QRYGRWPAPVMEELARALAEQIAAGRPLVVMNAPFDLTILDRELRRHRASTLGHYLASTP 130

Query: 118 ---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
              LDP R++D      RK    R  L  LC  Y + +
Sbjct: 131 LCVLDP-RVLDKHLDRYRK---GRRTLTDLCAHYEVEL 164


>gi|257895239|ref|ZP_05674892.1| exonuclease [Enterococcus faecium Com12]
 gi|257897861|ref|ZP_05677514.1| exonuclease [Enterococcus faecium Com15]
 gi|293377229|ref|ZP_06623434.1| exonuclease [Enterococcus faecium PC4.1]
 gi|257831804|gb|EEV58225.1| exonuclease [Enterococcus faecium Com12]
 gi|257835773|gb|EEV60847.1| exonuclease [Enterococcus faecium Com15]
 gi|292644090|gb|EFF62195.1| exonuclease [Enterococcus faecium PC4.1]
          Length = 177

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI  E +++ P F  ++     +F ++N   +AHNA FD   +   L   + +   
Sbjct: 50  VQIHGIHQEDVRNAPKFPEVWQTIQPYF-QKNLLVVAHNAAFDTKVLAGCLDYYHLE--Q 106

Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P+ + + T+  +RR  P   N  LN++C+   I + H   H AL DS   +++ +
Sbjct: 107 PNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 159


>gi|332520671|ref|ZP_08397133.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332044024|gb|EGI80219.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 444

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 14/158 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65
           M   + D+ET+G   + +RI EI   +  + +K    F   + PN     PE +  L GI
Sbjct: 1   MFYTIIDVETSG---RTNRITEISIFKYHE-NKIIDEFTSLVNPNCY--IPEHITALTGI 54

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  + + P FS I ++  +    ++  ++AHN  FD   I  E +R+  D     + + 
Sbjct: 55  DNNTVANAPEFSEIANKVLEI--TKDCIFVAHNVNFDYNVIRKEFKRLEID--FTRKKLC 110

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGA 160
           T+ ++R+  P  R+  L  LCK   I I+  HR++  A
Sbjct: 111 TVRLSRKLLPGHRSYSLGKLCKDLNICINGRHRARGDA 148


>gi|325568813|ref|ZP_08145106.1| exonuclease [Enterococcus casseliflavus ATCC 12755]
 gi|325157851|gb|EGC70007.1| exonuclease [Enterococcus casseliflavus ATCC 12755]
          Length = 177

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 7/116 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI  E +++ P F  ++ +   ++ + N+  +AHNA FD G +   L         
Sbjct: 50  IQIHGIRPEDVQEAPKFPDVWKQIQQYY-QLNSLIVAHNAGFDTGVLAGCLDYYGLS--Q 106

Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           P+ + + T+  +R+ +P   N  LN++C++  I +   + H AL DS   + + ++
Sbjct: 107 PNYLSLCTVRTSRKLYPEFTNHKLNTVCEQLQIPL--LNHHDALEDSRACAQILLR 160


>gi|314937698|ref|ZP_07845022.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a04]
 gi|314943353|ref|ZP_07850126.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133C]
 gi|314953543|ref|ZP_07856454.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133A]
 gi|314994073|ref|ZP_07859394.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133B]
 gi|314996850|ref|ZP_07861856.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a01]
 gi|313589017|gb|EFR67862.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a01]
 gi|313591508|gb|EFR70353.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133B]
 gi|313594422|gb|EFR73267.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133A]
 gi|313597934|gb|EFR76779.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133C]
 gi|313642944|gb|EFS07524.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a04]
          Length = 194

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI  E +++ P F  ++     +F ++N   +AHNA FD   +   L   + +   
Sbjct: 67  VQIHGIHQEDVRNAPKFPEVWQTIQPYF-QKNRLVVAHNAAFDTKVLAGCLDYYHLE--Q 123

Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P+ + + T+  +RR  P   N  LN++C+   I + H   H AL DS   +++ +
Sbjct: 124 PNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 176


>gi|116629671|ref|YP_814843.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238854243|ref|ZP_04644587.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri 202-4]
 gi|116095253|gb|ABJ60405.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238833054|gb|EEQ25347.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri 202-4]
          Length = 937

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 11/153 (7%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   ++ D II+ G   ++   K  +T+   + P+  +  P+A++ L  I++ 
Sbjct: 12  VVDLETTGTQRNQGDHIIQFGCA-IIKKRKVVKTYSFLINPH--REIPQAVENLTHISNR 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     F+    +       +N  ++AHN  FD+ F+N EL     +PL   + IDT+ 
Sbjct: 69  DVAQARDFNYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAIDTVE 125

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           +A+   P+     L  L  R  + I H + H A
Sbjct: 126 LAQIAFPTFPSYKLRDLTAR--LKIKHLNPHRA 156


>gi|167554101|ref|ZP_02347842.1| YacC [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205321613|gb|EDZ09452.1| YacC [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
          Length = 287

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 12/120 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGLD+   + +EIG V     ++  R F+  L P    + P A  +HGI+DE 
Sbjct: 106 VFLDTETTGLDA-GAQALEIGLVN----ARGERIFETRLKPTVAID-PAAAAVHGISDED 159

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   PS+  I  +       +    +  NA+FD   +       N    DP+  +D+L++
Sbjct: 160 LVRAPSWPDIAQQLQHHIGRRPL--VIFNAEFDTRILKQTAAAHN----DPASWLDSLTV 213


>gi|260577531|ref|ZP_05845471.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium ATCC
           43734]
 gi|258604335|gb|EEW17572.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium ATCC
           43734]
          Length = 214

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 23/152 (15%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D K  RI+    V +       R     L   G +   +A  +HGIT E+ +
Sbjct: 4   FDLETTGVDPKTARIVTSALVTI---KGRERNDIEMLADPGVEIPQQASDVHGITTEYAR 60

Query: 72  DKPS-FSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID-- 125
           +       + ++  +         A  I +NA +D+  + A         L+PS  +D  
Sbjct: 61  EHGQDHGEVLAKTIEGIRAAWRSGATLIVYNAAYDLSVLRA---------LEPSFTVDGP 111

Query: 126 -----TLSIARRKHPSSRNDLNSLCKRYGITI 152
                 +  A+ ++   +  L S+C+ YG+T+
Sbjct: 112 VFDPYVVDRAKDQYRKGKRTLESVCQHYGVTL 143


>gi|42518811|ref|NP_964741.1| hypothetical protein LJ0886 [Lactobacillus johnsonii NCC 533]
 gi|41583097|gb|AAS08707.1| hypothetical protein LJ_0886 [Lactobacillus johnsonii NCC 533]
          Length = 177

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 5/115 (4%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +K+HGIT E +K+ P+ + ++ +    + +      AHNA+FD   +   L R N  P  
Sbjct: 50  IKIHGITAEDVKNAPTMAEVWPKIKKLY-QPGMLVAAHNARFDCRVMEKSLARYNI-PAP 107

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               IDTL+ ++   P   N  L+++ +   I + H   H AL DS   + + I+
Sbjct: 108 HYFAIDTLATSKAFEPYLPNHKLDTVSEALNINLWHH--HNALSDSEACAGILIE 160


>gi|311110686|ref|ZP_07712083.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri MV-22]
 gi|311065840|gb|EFQ46180.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri MV-22]
          Length = 937

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 11/153 (7%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   ++ D II+ G   ++   K  +T+   + P+  +  P+A++ L  I++ 
Sbjct: 12  VVDLETTGTQRNQGDHIIQFGCA-IIKKRKVVKTYSFLINPH--REIPQAVENLTHISNR 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     F+    +       +N  ++AHN  FD+ F+N EL     +PL   + IDT+ 
Sbjct: 69  DVAQARDFNYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAIDTVE 125

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           +A+   P+     L  L  R  + I H + H A
Sbjct: 126 LAQIAFPTFPSYKLRDLTAR--LKIKHLNPHRA 156


>gi|227529584|ref|ZP_03959633.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC
           49540]
 gi|227350483|gb|EEJ40774.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC
           49540]
          Length = 178

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 9/126 (7%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI +E ++D P+F  ++     F+  +    IAHN  FD   +   L      P  
Sbjct: 50  VQIHGIHEEDVQDAPTFPEVWQHIKQFYRPEQLV-IAHNNSFDNSVLKNTLLHYGIQP-- 106

Query: 120 PS-RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMM 175
           P+ + +DT+  +RR  P   N  LN++C    I + H   H AL D+   +++  Y    
Sbjct: 107 PTFQTLDTVKSSRRLIPGLDNYRLNTVCDALQIDLHHH--HNALDDAQACANILLYEAQH 164

Query: 176 VGGSQI 181
             G Q+
Sbjct: 165 FSGEQL 170


>gi|227550322|ref|ZP_03980371.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330]
 gi|227180544|gb|EEI61516.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330]
          Length = 201

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI  E +++ P F  ++     +F ++N   +AHNA FD   +   L   + +   
Sbjct: 74  VQIHGIHQEDVRNAPKFPEVWQTIQPYF-QKNLLVVAHNAAFDTKVLAGCLDYYHLE--Q 130

Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P+ + + T+  +RR  P   N  LN++C+   I + H   H AL DS   +++ +
Sbjct: 131 PNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 183


>gi|149371249|ref|ZP_01890735.1| DNA Pol III Epsilon Chain [unidentified eubacterium SCB49]
 gi|149355387|gb|EDM43946.1| DNA Pol III Epsilon Chain [unidentified eubacterium SCB49]
          Length = 257

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 28/136 (20%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-----------PEAL 60
           FD+ETTG++   DRI+EI  +++               PNG K S           P+  
Sbjct: 12  FDLETTGINIAKDRIVEIAILKVF--------------PNGNKESFVWKVNPTIPIPKVT 57

Query: 61  K-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PL 118
             +HGITDE + ++P+F  +  + +    + +      N +FD+  +  EL R   D  L
Sbjct: 58  SDIHGITDEMVVNEPTFKELAPKVFALIKDSDLAGFNSN-RFDIPLLAEELLRAEIDYDL 116

Query: 119 DPSRIIDTLSIARRKH 134
             +  +D  +I  +K 
Sbjct: 117 KKAASVDVQTIFHKKE 132


>gi|255528639|ref|ZP_05395399.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|296185899|ref|ZP_06854305.1| exonuclease [Clostridium carboxidivorans P7]
 gi|255507668|gb|EET84148.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|296049567|gb|EFG88995.1| exonuclease [Clostridium carboxidivorans P7]
          Length = 196

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 9/132 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+KI  D ETTGL+      +     ++    +    F      +     P A  +HG +
Sbjct: 1   MKKIFLDTETTGLEPGQIIQLTYCVCDINSRGEEKVCFAKNFFFDVDYVEPSAEAVHGFS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPS 121
            E LK      S+  EF D  +E  A+     +IAHN +FD  F+ AE  R+N    +P+
Sbjct: 61  VERLKT----LSMGQEFKDAASEVAADLEGGIFIAHNVRFDQKFVTAEFDRLNSIHWNPA 116

Query: 122 RIIDTLSIARRK 133
           +   T+   + K
Sbjct: 117 KFFCTMQYFKSK 128


>gi|257879256|ref|ZP_05658909.1| exonuclease [Enterococcus faecium 1,230,933]
 gi|257881926|ref|ZP_05661579.1| exonuclease [Enterococcus faecium 1,231,502]
 gi|257886420|ref|ZP_05666073.1| exonuclease [Enterococcus faecium 1,231,501]
 gi|257892035|ref|ZP_05671688.1| exonuclease [Enterococcus faecium 1,231,410]
 gi|257894890|ref|ZP_05674543.1| exonuclease [Enterococcus faecium 1,231,408]
 gi|258617178|ref|ZP_05714948.1| exonuclease [Enterococcus faecium DO]
 gi|260558702|ref|ZP_05830891.1| exonuclease [Enterococcus faecium C68]
 gi|261208809|ref|ZP_05923246.1| exonuclease [Enterococcus faecium TC 6]
 gi|289567393|ref|ZP_06447761.1| exonuclease [Enterococcus faecium D344SRF]
 gi|293554053|ref|ZP_06674651.1| exonuclease [Enterococcus faecium E1039]
 gi|293559453|ref|ZP_06675990.1| exonuclease [Enterococcus faecium E1162]
 gi|293567360|ref|ZP_06678710.1| exonuclease [Enterococcus faecium E1071]
 gi|293571424|ref|ZP_06682452.1| exonuclease [Enterococcus faecium E980]
 gi|294616820|ref|ZP_06696561.1| exonuclease [Enterococcus faecium E1636]
 gi|294620071|ref|ZP_06699426.1| exonuclease [Enterococcus faecium E1679]
 gi|294622945|ref|ZP_06701839.1| exonuclease [Enterococcus faecium U0317]
 gi|257813484|gb|EEV42242.1| exonuclease [Enterococcus faecium 1,230,933]
 gi|257817584|gb|EEV44912.1| exonuclease [Enterococcus faecium 1,231,502]
 gi|257822276|gb|EEV49406.1| exonuclease [Enterococcus faecium 1,231,501]
 gi|257828395|gb|EEV55021.1| exonuclease [Enterococcus faecium 1,231,410]
 gi|257831269|gb|EEV57876.1| exonuclease [Enterococcus faecium 1,231,408]
 gi|260075161|gb|EEW63474.1| exonuclease [Enterococcus faecium C68]
 gi|260077311|gb|EEW65031.1| exonuclease [Enterococcus faecium TC 6]
 gi|289160818|gb|EFD08750.1| exonuclease [Enterococcus faecium D344SRF]
 gi|291589962|gb|EFF21760.1| exonuclease [Enterococcus faecium E1071]
 gi|291590326|gb|EFF22094.1| exonuclease [Enterococcus faecium E1636]
 gi|291593687|gb|EFF25206.1| exonuclease [Enterococcus faecium E1679]
 gi|291597644|gb|EFF28801.1| exonuclease [Enterococcus faecium U0317]
 gi|291601744|gb|EFF31998.1| exonuclease [Enterococcus faecium E1039]
 gi|291606515|gb|EFF35912.1| exonuclease [Enterococcus faecium E1162]
 gi|291608496|gb|EFF37790.1| exonuclease [Enterococcus faecium E980]
          Length = 177

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI  E +++ P F  ++     +F ++N   +AHNA FD   +   L   + +   
Sbjct: 50  VQIHGIHQEDVRNAPKFPEVWQTIQPYF-QKNRLVVAHNAAFDTKVLAGCLDYYHLE--Q 106

Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P+ + + T+  +RR  P   N  LN++C+   I + H   H AL DS   +++ +
Sbjct: 107 PNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 159


>gi|300361735|ref|ZP_07057912.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           gasseri JV-V03]
 gi|300354354|gb|EFJ70225.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           gasseri JV-V03]
          Length = 937

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 11/153 (7%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   ++ D II+ G   ++   K  +T+   + P+  +  P+A++ L  I++ 
Sbjct: 12  VVDLETTGTQRNQGDHIIQFGCA-IIKKRKVVKTYSFLINPH--REIPQAVENLTHISNR 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     F     +       +N  ++AHN  FD+ F+N EL     +PL   + IDT+ 
Sbjct: 69  DVAQARDFKYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAIDTVE 125

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           +A+   P+     L  L  R  + I H + H A
Sbjct: 126 LAQIAFPTFPSYKLRDLTAR--LKIKHLNPHRA 156


>gi|224372263|ref|YP_002606635.1| exonuclease [Nautilia profundicola AmH]
 gi|223589603|gb|ACM93339.1| exonuclease [Nautilia profundicola AmH]
          Length = 293

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 31/179 (17%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ ++ D ETTG + + DRII++  + L +  +        + P     S EA+ +H IT
Sbjct: 1   MKIVILDTETTG-NKEEDRIIQLSYLVLNENLEIEEIHDELVKP-PLPISFEAMAVHHIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDP-SR 122
           +E ++DKP      +E +    E N+     + HNAKFD       L  + K+  +   +
Sbjct: 59  NEMVEDKPLIKH--TESYKRLKELNSPENLLVIHNAKFD-------LDMLKKEGFNSFFK 109

Query: 123 IIDTLSIARRKHPSSRNDLN-------------SLCKRYGITISHRSKHGALLDSHLLS 168
           +IDT  + +   P  +  L               +C++Y I I   + H AL D  +L 
Sbjct: 110 LIDTFRVLKHLIPEGKFSLQYNRYALGLYKKEKDICEKYNIQI---NAHDALGDVIVLG 165


>gi|319953942|ref|YP_004165209.1| exonuclease rnase t and DNA polymerase iii [Cellulophaga algicola
           DSM 14237]
 gi|319422602|gb|ADV49711.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga algicola
           DSM 14237]
          Length = 258

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 55/101 (54%), Gaps = 3/101 (2%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG++   DR++EI  +++  +   N+  + +L         E + +HGIT+E + 
Sbjct: 12  FDLETTGINVAKDRVVEIAILKI--HPNGNKESKTWLVNPEMVIPDEVIAVHGITNEKVA 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           ++P+F  +  + ++   + +     ++ +FD+  +  E+ R
Sbjct: 70  NEPTFKELSKDIYNMIKDSDLGGF-NSDRFDIPLLAEEMLR 109


>gi|197261383|ref|YP_002154199.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage
           LBL3]
 gi|197244473|emb|CAR31208.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage
           LBL3]
          Length = 184

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 77/183 (42%), Gaps = 24/183 (13%)

Query: 11  VFDIETTGLD-------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           V+D ETTGL         K  RIIE   V + D  K     + F+C  G        K+ 
Sbjct: 5   VWDTETTGLPFHQRVSLRKQPRIIEFAGV-ITDGEKILDEVE-FICNPGIVIEEIITKIT 62

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-------INKD 116
           G+ +E L   PSF     +  DFF   +A  IAHN  FD   +  +L R       +N  
Sbjct: 63  GLKNEDLIKHPSFLDQRQKVRDFFARADAN-IAHNLPFDKFMLTCDLARGKLGLEEVNFP 121

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            LD   + ++  +        R  L  L + Y     +  KH AL D  LL++V  +M V
Sbjct: 122 SLDICTVEESAPLF-----GHRMRLQHLYEHY--CGPYVQKHRALDDVRLLNEVCKRMGV 174

Query: 177 GGS 179
            G+
Sbjct: 175 YGA 177


>gi|120436992|ref|YP_862678.1| exonuclease domain-containing protein [Gramella forsetii KT0803]
 gi|117579142|emb|CAL67611.1| protein containing exonuclease domain [Gramella forsetii KT0803]
          Length = 507

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 19/160 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH-----GI 65
           + DIETTG   K +RI EI  + ++   K    +   + P+      +A+ L+     GI
Sbjct: 8   ITDIETTGNGIKGNRITEICVI-VVQNGKVIDEYSSLVNPS------QAIPLYIETLTGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DE + + P FS I  E       ++  ++AHN  FD   I AE   +++D     R+  
Sbjct: 61  NDEMVFNAPQFSEIADEITKI--TKDCIFVAHNVNFDYNIIRAEFASLDRD-FKRKRLC- 116

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           T+ + ++  P   +  L ++C    I I H  +H A  D 
Sbjct: 117 TVRLTKKLIPGLFSYSLGNICT--SINIPHIDRHRAKGDC 154


>gi|257886664|ref|ZP_05666317.1| exonuclease [Enterococcus faecium 1,141,733]
 gi|257822718|gb|EEV49650.1| exonuclease [Enterococcus faecium 1,141,733]
          Length = 177

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI  E +++ P F  ++     +F ++N   +AHNA FD   +   L   + +   
Sbjct: 50  VQIHGIHQEDVRNAPKFPEVWQTIQPYF-QKNRLVVAHNAAFDTKVLAGCLDYYHLE--Q 106

Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P+ + + T+  +RR  P   N  LN++C+   I + H   H AL DS   +++ +
Sbjct: 107 PNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 159


>gi|85814043|emb|CAH05238.1| DNA polymerase III, epsilon subunit [Micromonospora echinospora]
          Length = 386

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 7/122 (5%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
           +E+  V L D     R +   + P+ R   P+++  HGI+    +  P+F  +  +  + 
Sbjct: 1   MEVAVVHLDDQGNLTREWCSLVNPD-RDLGPQSV--HGISAAEARRAPTFGQLAGQIAEL 57

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLC 145
             ++    +AHN  FD  F+ AE +R+    P+D +  + T+ +A    P++   L   C
Sbjct: 58  LKDRVV--VAHNLSFDARFLTAEFERLGIAVPIDAASGLCTMRLASHFLPAAGRGLRD-C 114

Query: 146 KR 147
           +R
Sbjct: 115 RR 116


>gi|257867351|ref|ZP_05647004.1| exonuclease [Enterococcus casseliflavus EC30]
 gi|257873684|ref|ZP_05653337.1| exonuclease [Enterococcus casseliflavus EC10]
 gi|257877427|ref|ZP_05657080.1| exonuclease [Enterococcus casseliflavus EC20]
 gi|257801407|gb|EEV30337.1| exonuclease [Enterococcus casseliflavus EC30]
 gi|257807848|gb|EEV36670.1| exonuclease [Enterococcus casseliflavus EC10]
 gi|257811593|gb|EEV40413.1| exonuclease [Enterococcus casseliflavus EC20]
          Length = 180

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 7/116 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI  E +++ P F  ++ +   ++ + N+  +AHNA FD G +   L         
Sbjct: 53  IQIHGIRPEDVQEAPKFPDVWKQIQQYY-QLNSLIVAHNAGFDTGVLAGCLDYYGLS--Q 109

Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           P+ + + T+  +R+ +P   N  LN++C++  I +   + H AL DS   + + ++
Sbjct: 110 PNYLSLCTVRTSRKLYPEFTNHKLNTVCEQLQIPL--LNHHDALEDSRACAQILLR 163


>gi|54295804|ref|YP_128219.1| ribonuclease T [Legionella pneumophila str. Lens]
 gi|53755636|emb|CAH17138.1| ribonuclease T [Legionella pneumophila str. Lens]
 gi|307611851|emb|CBX01565.1| ribonuclease T [Legionella pneumophila 130b]
          Length = 207

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 23/191 (12%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRK 54
           KN+ R    +V D+ET G+D + + ++E+  V LLD        K +  F+  L   G +
Sbjct: 13  KNRFRGFLPVVVDVETAGIDPQKNALLEMCIV-LLDMDEQGLLKKESSYFEHILPFPGAE 71

Query: 55  NSPEALKLHGITDEF------LKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGF 105
              ++L+ + I D +      + ++ +   +F    D   +   Q A  + HNA FD+ F
Sbjct: 72  LDQKSLEFNQI-DPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLF 130

Query: 106 INAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           I A ++R   K P       DT ++A          L    +  G+    +  H A+ D+
Sbjct: 131 IKAAIKRTGIKSPFHAFTCFDTATLAGLIF--GETVLAKAVQAAGLHFDSQEAHSAIYDA 188

Query: 165 HLLSDVYIKMM 175
              +D++  M+
Sbjct: 189 EKTADLFCLMI 199


>gi|237808201|ref|YP_002892641.1| ribonuclease T [Tolumonas auensis DSM 9187]
 gi|237500462|gb|ACQ93055.1| ribonuclease T [Tolumonas auensis DSM 9187]
          Length = 206

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 22/194 (11%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NG 52
           M  K + R    +V D+ET G + K D ++E+ A  L +D   +   ++T    + P  G
Sbjct: 1   MCLKERFRGYYPVVIDVETAGFNPKTDALLEMAATTLKMDQDGWLSLDQTIHFHVEPFEG 60

Query: 53  RKNSPEALKLHGITDEF--LKDKPS-FSSIFSEFWDFFNEQNAEW------IAHNAKFDV 103
                 A+  +GI D F  L+   S + ++   F        AE       +AHNA FD 
Sbjct: 61  ANIEKAAIDFNGI-DPFNPLRGAVSEYDALHETFKIIRKGMKAEGCNRAIVVAHNATFDH 119

Query: 104 GFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+ A  +R  + ++P  P    DT ++A       +  L   C+   I   +   H AL
Sbjct: 120 SFMMAASERASLKRNPFHPFATFDTAALAGLA--LGQTVLAKACQTAAIPFDNNEAHSAL 177

Query: 162 LDSHLLSDVYIKMM 175
            D+   ++++  ++
Sbjct: 178 YDTERTAELFCYIV 191


>gi|308177615|ref|YP_003917021.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis
           Re117]
 gi|307745078|emb|CBT76050.1| putative DNA polymerase III subunit epsilon [Arthrobacter
           arilaitensis Re117]
          Length = 412

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 20/173 (11%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN---GRKNSPEALKLHGIT 66
           + D ETTGL    NDRI EI  V +        +++  + P    G+++      +H I 
Sbjct: 8   IVDTETTGLFPGGNDRIAEIAIVTMNRQGTIVDSWETLINPQRDLGKQS------IHRIQ 61

Query: 67  DEFLKDKPSFSSIFSEF-WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
              + D PSF  +  E  W          +AHN  FD  F+ AE ++    P+  + +  
Sbjct: 62  SRDVLDAPSFKDLAEELHWRL---SGTVLVAHNLSFDSRFLEAEFRKCGL-PVPETFLAQ 117

Query: 126 TLSIARRKH---PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +   R  H     +   L   C  +GI +  +  H A+ D+   + +  + M
Sbjct: 118 GMCTMRMSHRYLQGAGRSLQDCCDSFGIDL--QQAHSAVGDATATATLLSRYM 168


>gi|170755669|ref|YP_001779899.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str.
           Okra]
 gi|169120881|gb|ACA44717.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str.
           Okra]
          Length = 309

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +KD+  F  I+ +  D+FN  N   IAHNA FD+  + + L+  N   +     I T
Sbjct: 58  PHMVKDELEFDKIWQKIKDYFN--NNLVIAHNASFDMSVLRSTLKLYN-IKMPSFEYICT 114

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G    H   H AL D+   S++ + +
Sbjct: 115 MKLSKNFYSNIDNARLNTINNFLGYKFKH---HDALADAMACSNILLNI 160


>gi|157413038|ref|YP_001483904.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9215]
 gi|157387613|gb|ABV50318.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9215]
          Length = 248

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 25/177 (14%)

Query: 6   KMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLH 63
           K+ KI + D ETTGLD   D +IEIG + L D S      QV FL P    N+ EA +++
Sbjct: 23  KIEKILILDTETTGLDENKDEVIEIGCI-LFDVSFKCVLSQVSFLFP---VNNNEAEQVN 78

Query: 64  GITDEF------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKD 116
           GI+ +        +D  +F     ++ DF        +AHN +FD   F    L ++NK 
Sbjct: 79  GISADVTNISQPWEDGLNFFLKLVDYSDFI-------VAHNVEFDKKWFGKGRLPKLNKK 131

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +     ++ ++ + +K   +R  +  L   + I + +   H AL D   +S+V+ K
Sbjct: 132 WICS---LEDINWSFQKSLKNRPSVTDLALSFSIPVWNL--HRALSDCFYISEVFKK 183


>gi|297184143|gb|ADI20262.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 442

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 7/152 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR  V DIE TG    ++RII++ A+ +L+  +        + P  +   P   KL GIT
Sbjct: 1   MRFAVIDIECTGGTFGSERIIDV-AIFVLENGEVVDQLVSLVNPE-KGIDPYVTKLTGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++  P F  +          ++  ++AHN  FD      E + +  D    +  +DT
Sbjct: 59  NKMVRTAPKFYELAKRVVKI--TEDCTFVAHNISFDYRVFQQEFESMEFDYHRAT--LDT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSK 157
           +    R  P   N  L ++ K  G+  S R +
Sbjct: 115 IPYCERIFPDWENYGLKTVSKELGLVNSARHR 146


>gi|168182135|ref|ZP_02616799.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Bf]
 gi|237793573|ref|YP_002861125.1| DNA polymerase III subunit epsilon [Clostridium botulinum Ba4 str.
           657]
 gi|182674639|gb|EDT86600.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Bf]
 gi|229262587|gb|ACQ53620.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Ba4 str. 657]
          Length = 309

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D  K        + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKD-GKIVEKVHYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +KD+  F  I+ +   +FN  N   IAHNA FD+  + + L+  N   +     I T
Sbjct: 58  PHMVKDELEFDKIWEKIKGYFN--NNLVIAHNASFDMSVLRSTLKLYN-IKMPSFEYICT 114

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + S  N  LN++    G    H   H AL D+   S++ + +
Sbjct: 115 MKLSKNFYSSIDNARLNTVNNFLGYKFQH---HDALADAMACSNILLNI 160


>gi|330836252|ref|YP_004410893.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM
           17374]
 gi|329748155|gb|AEC01511.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM
           17374]
          Length = 231

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 10/146 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   +  ++    +G   +    K   T+   + P      P  +++HGIT
Sbjct: 24  MEFVALDFETA--NGTHESACSLGLALMDGTGKLIDTWYQLIKPPSSFFDPANIEIHGIT 81

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--I 124
            E + D PSF  ++S   +F  ++    IAHNA FD+  + A L       ++  RI   
Sbjct: 82  PENVADAPSFDKVWSAAREFIADRLV--IAHNATFDMTILKAMLHWYK---MEIPRIGYA 136

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYG 149
            TL ++R+  P   N  L +L + +G
Sbjct: 137 CTLRLSRKVWPEMNNYKLTTLSEVFG 162


>gi|296117576|ref|ZP_06836160.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969307|gb|EFG82548.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 467

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 10/125 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEA-LKLHGIT 66
           +  D+ET   +     I +IGAV  +   +T    +V+LC  P G  +  +  + +HGIT
Sbjct: 108 VAVDVETA--NGNWGSICQIGAVRFVAGEETES--KVWLCQPPAGIDHFDDINISIHGIT 163

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +KD P+F+    E   F  +     +AHNA+FD   + +   R  + P+    +  +
Sbjct: 164 ADDVKDAPTFAEAAGELLTFMRDDVL--VAHNAQFDATALRSAFLR-TQTPVPEMALACS 220

Query: 127 LSIAR 131
           L++AR
Sbjct: 221 LALAR 225


>gi|170782319|ref|YP_001710652.1| DNA polymerase III subunit epsilon [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156888|emb|CAQ02056.1| putative exonuclease [Clavibacter michiganensis subsp. sepedonicus]
          Length = 233

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 8/146 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D +  RI+    + +LD          +L   G +    A  +HG+T E  +
Sbjct: 12  FDLETTGVDVETARIV-TACIVVLDAQGEVVERHDWLADPGVEIPAGAAAIHGVTTERAR 70

Query: 72  -DKPSFSSIFSEFWDFFNEQNAEWIA---HNAKFDVGFINAELQRINKDPL-DPSRIIDT 126
            +     ++  E      E  A  +A   +NA +D+  +N E  R   +PL D   +ID 
Sbjct: 71  AEGRDAGAVVLEIVTTIREMFARGLALVVYNAPYDLTLLNREAVRHGVEPLRDTGPVIDP 130

Query: 127 LSI--ARRKHPSSRNDLNSLCKRYGI 150
           L I  A   +   +  L+   + YG+
Sbjct: 131 LVIDKAVDTYRRGKRTLSVAAEHYGV 156


>gi|170727178|ref|YP_001761204.1| exonuclease RNase T and DNA polymerase III [Shewanella woodyi ATCC
           51908]
 gi|169812525|gb|ACA87109.1| Exonuclease RNase T and DNA polymerase III [Shewanella woodyi ATCC
           51908]
          Length = 226

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 31/171 (18%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +  D+E TGLD++ D+I+ IG V +    L  SK            G+  +     +HGI
Sbjct: 44  LAIDLEMTGLDAQFDQILSIGIVPIEKGRLILSKAEHKLVKIEGSVGQSAT-----IHGI 98

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-----QRINKDPLDP 120
            D  L    S     +  W     Q    +AH++  D+ F+   L     QR+       
Sbjct: 99  LDHHLNSAVSPEEAMT--WFLERCQGQMLVAHHSPLDLAFLQKGLSTHFRQRVTLMA--- 153

Query: 121 SRIIDTLSIARRK----HPSSRND---LNSLCKRYGITISHRSKHGALLDS 164
              IDTL+I +R+    H   +     L +   RYG+ +   + H AL+D+
Sbjct: 154 ---IDTLAIEKRRLMRQHEVLKEGALRLGASRARYGLPVY--AAHNALIDA 199


>gi|85711670|ref|ZP_01042727.1| DNA polymerase III subunit epsilon [Idiomarina baltica OS145]
 gi|85694530|gb|EAQ32471.1| DNA polymerase III subunit epsilon [Idiomarina baltica OS145]
          Length = 244

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 5/144 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGLD + + I+ I  V +          + ++    +  + E++ +HGIT   
Sbjct: 55  VAVDFETTGLDCQRNSIVSIAVVPMSAQRIFMSQARQWVVKPRQDLTDESVVIHGITHSD 114

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDTLS 128
           ++  P   +I  E  D    +   W+ H    +  F+   +  R N+    P  +IDT++
Sbjct: 115 IQSAPDIEAILPELLDLVAGKI--WVVHYNGIERPFLQKAMDARFNEHIHFP--VIDTMA 170

Query: 129 IARRKHPSSRNDLNSLCKRYGITI 152
           I  R H   R+  + L  +  ++I
Sbjct: 171 IEARFHRQRRSFWSRLMGKRPLSI 194


>gi|320457724|dbj|BAJ68345.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 235

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 11/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG    +  I EIGAV +      ++ FQ  + P  R    +   L GITD  
Sbjct: 35  VALDLETTGFYPNSCAITEIGAVRVRKGHIVDQ-FQQLVNPL-RPIPRQITTLTGITDAM 92

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           + D      +   F  +     A       + HN  FD+ F++   + I       +   
Sbjct: 93  VADLDPIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACAD-Y 151

Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           DT+ I+R   P+ R+  L  L  R+G  I+   +H AL D+
Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFG--IADNEEHRALSDA 190


>gi|298498457|ref|ZP_07008264.1| gp39 [Vibrio cholerae MAK 757]
 gi|297542790|gb|EFH78840.1| gp39 [Vibrio cholerae MAK 757]
          Length = 188

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I+ D ETTGLDS + RI+E+  ++     K   +    LC      SPE   +HGIT++
Sbjct: 12  AIILDTETTGLDS-DARILEVSIIDAQTGIKLYSSLVNPLC----SISPEVTAIHGITND 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
            + D P+F  ++++   + ++  +    +N  FD
Sbjct: 67  MVIDMPTFDKVWNDIKGYLSD--SVIYVYNLDFD 98


>gi|310767851|gb|ADP12801.1| exodeoxyribonuclease X [Erwinia sp. Ejp617]
          Length = 221

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V++++    N      + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGLQGG---VVEVASVDVINGQILN-PMSDLISPD-RPISRQAMAVHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP+       +       +  ++AHNA FD       L  ++ D       I T+++A
Sbjct: 59  RGKPAIEQAIGRY-----HGSPFYVAHNASFD----RRMLPEMHGD------WICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L +   + +S  +    H AL D ++ + + +++M
Sbjct: 104 RRLWPGLKYTNEALRQSLQLEVSPPADLHAHRALYDCYVTAALLMRIM 151


>gi|288802867|ref|ZP_06408304.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18]
 gi|288334684|gb|EFC73122.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18]
          Length = 896

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 63/146 (43%), Gaps = 23/146 (15%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAV---------ELLD-YSKTNRTFQVFLCPNGRK 54
           N+   +VFD ETTGL+   D IIEI A+         E LD Y +T++     L   G K
Sbjct: 510 NEEEIVVFDTETTGLNVFQDDIIEIAAIRIKGGEVVGEPLDLYIETDKPILPML---GDK 566

Query: 55  NSPEALKLHG--ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            +P     H    T E L    S S     F  +     +  + HNA +D   ++  LQR
Sbjct: 567 ENPMYAIYHEKMSTGELL----SPSDALQRFLAYVG--TSPILGHNANYDYNILDNNLQR 620

Query: 113 INKDPLDPS--RIIDTLSIARRKHPS 136
             KD +     R  D+L + R   PS
Sbjct: 621 YCKDTMQAHDIRCFDSLKLIRLLAPS 646


>gi|69245046|ref|ZP_00603204.1| Exonuclease [Enterococcus faecium DO]
 gi|314947594|ref|ZP_07851004.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0082]
 gi|68196047|gb|EAN10479.1| Exonuclease [Enterococcus faecium DO]
 gi|313645987|gb|EFS10567.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0082]
          Length = 201

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI  E +++ P F  ++     +F ++N   +AHNA FD   +   L   + +   
Sbjct: 74  VQIHGIHQEDVRNAPKFPEVWQTIQPYF-QKNRLVVAHNAAFDTKVLAGCLDYYHLE--Q 130

Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P+ + + T+  +RR  P   N  LN++C+   I + H   H AL DS   +++ +
Sbjct: 131 PNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 183


>gi|149408370|ref|YP_001294473.1| hypothetical protein ORF056 [Pseudomonas phage F8]
 gi|219523927|ref|YP_002455988.1| hypothetical protein PB1_gp58 [Pseudomonas phage PB1]
 gi|190333523|gb|ACE73778.1| conserved hypothetical protein [Pseudomonas phage PB1]
          Length = 184

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 77/184 (41%), Gaps = 24/184 (13%)

Query: 7   MRKIVFDIETTGLD-------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MR  V+D ETTGL         K  RIIE   V  +   +T      F+C  G       
Sbjct: 1   MRFAVWDTETTGLPFHQRVSLRKQPRIIEFAGV--ITDGETILDEVEFICNPGIVIEEII 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR------- 112
            K+ G+ +E L   PSF     +  DFF++ +A  IAHN  FD   +  +L R       
Sbjct: 59  TKITGLKNEDLIKHPSFLDQRQKVRDFFSKADAN-IAHNLPFDKFMLTCDLARGKLGLEE 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +N   LD   + ++  +        R  L  L + Y     +  KH AL D  LL +V  
Sbjct: 118 VNFPSLDICTVEESAPLF-----GHRMRLQHLYEHY--CGPYVQKHRALDDVRLLHEVCK 170

Query: 173 KMMV 176
           +M V
Sbjct: 171 RMGV 174


>gi|217980141|ref|YP_002364191.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
 gi|217508312|gb|ACK55097.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
          Length = 201

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D ETTGL   +  ++EI  ++       N      + P+G   + EA+ +HGITD 
Sbjct: 22  ALILDTETTGL-GDDAEVVEIAVID----CAGNVLLDTLVRPSGPVPA-EAVAIHGITDA 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            L D P++S I   F      +    + ++ +FD   I+   +R
Sbjct: 76  MLADAPTWSEIHDRFCCLVEGRQV--VIYSREFDARLISQTARR 117


>gi|227524779|ref|ZP_03954828.1| DNA-directed DNA polymerase III [Lactobacillus hilgardii ATCC 8290]
 gi|227088056|gb|EEI23368.1| DNA-directed DNA polymerase III [Lactobacillus hilgardii ATCC 8290]
          Length = 177

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +HGI  + + + P+F  ++      F   N   +AHNA FD   +   L+R   D L 
Sbjct: 50  INVHGIHKQDVANAPTFPELWDHIAPLFTA-NKLVVAHNASFDNSVLKRTLERY--DLLL 106

Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P  + +DTL  +++ +P   N  LN++C    I + H   H AL DS   +++ +
Sbjct: 107 PHYLTLDTLKTSKQFYPQMVNHKLNTVCDELHIELEHH--HNALDDSVACANILL 159


>gi|227510619|ref|ZP_03940668.1| DNA-directed DNA polymerase III [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190271|gb|EEI70338.1| DNA-directed DNA polymerase III [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 177

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +HGI  + + + P+F  ++      F   N   +AHNA FD   +   L+R   D L 
Sbjct: 50  INVHGIHKQDVANAPTFPELWDHIAPLFTA-NKLVVAHNASFDNSVLKRTLERY--DLLL 106

Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P  + +DTL  +++ +P   N  LN++C    I + H   H AL DS   +++ +
Sbjct: 107 PHYLTLDTLKTSKQFYPQMVNHKLNTVCDELHIELEHH--HNALDDSVACANILL 159


>gi|213691637|ref|YP_002322223.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523098|gb|ACJ51845.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 211

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 11/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG    +  I EIGAV +      ++ FQ  + P  R    +   L GITD  
Sbjct: 11  VALDLETTGFYPNSCAITEIGAVRVRKGHIVDQ-FQQLVNPL-RPIPRQITTLTGITDAM 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           + D      +   F  +     A       + HN  FD+ F++   + I       +   
Sbjct: 69  VADLDPIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACAD-Y 127

Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
           DT+ I+R   P+ R+  L  L  R+G  I+   +H AL D+
Sbjct: 128 DTMQISRALFPAQRHHRLADLIVRFG--IADNEEHRALSDA 166


>gi|238762297|ref|ZP_04623269.1| Exodeoxyribonuclease 10 [Yersinia kristensenii ATCC 33638]
 gi|238699644|gb|EEP92389.1| Exodeoxyribonuclease 10 [Yersinia kristensenii ATCC 33638]
          Length = 219

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 27/170 (15%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET G +     I+EI +V++++    N      + P+ R  S +A+ +H IT+E +
Sbjct: 5   VIDTETCGFEGG---IVEIASVDVVNGVVIN-PMSDLVSPD-RPISLDAMIIHHITEEMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP  +    ++     + +  ++AHNA FD G +          P    + I TL +A
Sbjct: 60  EGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICTLKLA 104

Query: 131 RRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175
           R  +P  ++    L  RY + ++     +   H AL D ++ + +  ++M
Sbjct: 105 RMLYPDIKHSNQYL--RYALRLNVSVPDNLYPHRALYDCYVTAALLQRIM 152


>gi|217980123|ref|YP_002364173.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
 gi|217508294|gb|ACK55079.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
          Length = 201

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 23/126 (18%)

Query: 9   KIVFDIETTGLDSKND----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            ++ D ETTGL    +     +I+     LLD           + P+G   + EA  +HG
Sbjct: 22  ALILDTETTGLGDDAEVVELAVIDCAGAVLLD---------TLVRPSGPVPA-EAAAIHG 71

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDP------ 117
           ITD  L   P++S + + F      +    + +N +FDV  I+   +R   + P      
Sbjct: 72  ITDAMLAGAPTWSELHARFCGLVEGRQV--VIYNHEFDVRVISQTARRYGLQAPQGFDQV 129

Query: 118 LDPSRI 123
           LDP RI
Sbjct: 130 LDPGRI 135


>gi|123965921|ref|YP_001011002.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9515]
 gi|123200287|gb|ABM71895.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9515]
          Length = 270

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 17/190 (8%)

Query: 6   KMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K+ KI + D ETTGLD   D IIEIG +     SK+  +   FL P    +S EA  ++G
Sbjct: 45  KIEKILILDTETTGLDENKDEIIEIGCILFHVTSKSVLSQVSFLFP---VSSNEAEHVNG 101

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRI 123
           I+ E    K  +    + F    +  +   +AHN +FD   F    L  + K+ +     
Sbjct: 102 ISAEVSNIKQPWEEGLNFFLKLVDCADLI-VAHNVEFDKKWFGKGRLPNLEKNWICS--- 157

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------MMVG 177
           ++ ++ + +K+  +R  +  L   + I +   S H AL D   +S+V+ K      +++ 
Sbjct: 158 LEDINWSFQKNLKNRPSVTDLALSFSIPV--WSLHRALSDCFYISEVFKKCENLEELLIK 215

Query: 178 GSQINFGFKT 187
            ++  F +K 
Sbjct: 216 ATEPRFLYKA 225


>gi|52843158|ref|YP_096957.1| ribonuclease T [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|19880967|gb|AAM00600.1| Rnase T [Legionella pneumophila]
 gi|52630269|gb|AAU29010.1| ribonuclease T [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 207

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 23/191 (12%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRK 54
           KN+ R    +V D+ET G+D + + ++E+  V LLD        K +  F+  L   G +
Sbjct: 13  KNRFRGFLPVVVDVETAGIDPQKNALLEMCIV-LLDMDEQGLLKKDSSYFEHILPFPGAE 71

Query: 55  NSPEALKLHGITDEF------LKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGF 105
              ++L+ + I D +      + ++ +   +F    D   +   Q A  + HNA FD+ F
Sbjct: 72  LDQKSLEFNQI-DPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLF 130

Query: 106 INAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           I A ++R   K P       DT ++A          L    +  G+    +  H A+ D+
Sbjct: 131 IKAAIKRTGIKSPFHAFTCFDTATLAGLIF--GETVLAKAAQAAGLHFDSQEAHSAIYDA 188

Query: 165 HLLSDVYIKMM 175
              +D++  M+
Sbjct: 189 EKTADLFCLMI 199


>gi|15889361|ref|NP_355042.1| DNA polymerase III, epsilon subunit [Agrobacterium tumefaciens str.
           C58]
 gi|15157207|gb|AAK87827.1| DNA polymerase III, epsilon subunit [Agrobacterium tumefaciens str.
           C58]
          Length = 202

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      +G   + D  +  R  +  + P   + SP  + +HGI 
Sbjct: 1   MKTIAIDFETA--NEERGSACSVGLAWIED-GQIVRVEERLIRPRDMRFSPFNIAVHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P F  +  EF D F+   A  IAHNA FD   + A   +      D S +  +
Sbjct: 58  PRDVEDAPEFPEVMEEFIDDFH--GATMIAHNAAFDFSVMRASFDKYRLSYPDLSYLC-S 114

Query: 127 LSIARRKHP 135
           + IAR   P
Sbjct: 115 VKIARHVWP 123


>gi|159899742|ref|YP_001545989.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892781|gb|ABX05861.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 927

 Score = 44.7 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 15/157 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           I  D+ETTGL+   D IIE+GAV+    ++   T+Q  + P  ++  P +  +L GI   
Sbjct: 6   IALDLETTGLEPGRDEIIEVGAVKFRG-NEVLETYQTLVKP--KQVLPIKIARLTGIDAH 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P+F+SI  +   F   ++   I H+   D+ F+  +  ++ +         DT  
Sbjct: 63  ELTTAPTFNSIGGQLAKFL--KSYPIIGHSVDNDLRFLQQQGLKVTQPHY------DTFD 114

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           +A    P   N  L+++ +   + I H   H AL D+
Sbjct: 115 LATLLIPQLPNYSLSTIAEH--LQIQHPDAHRALADA 149


>gi|289664483|ref|ZP_06486064.1| exonuclease, RNase T and DNA polymerase III [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 322

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 5   NKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N +  I  D ETTGL+    D ++EI  V     +         +CP      PEA  +H
Sbjct: 46  NSVPPIFVDTETTGLNQDGRDEVLEIAIVN----ADGTILLNTLVCPARNTAWPEAQAIH 101

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           GI+ + +   PS+S +  +       +    + +NA FD  F
Sbjct: 102 GISPQDVAGAPSWSGLLPKIASICAGKTV--VFYNAPFDTSF 141


>gi|262194125|ref|YP_003265334.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077472|gb|ACY13441.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 11/152 (7%)

Query: 7   MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNS-PEALKLH 63
           M+ +VF D ETTGLD +   I+EI A+ +   + +  R   + + P   +++ PEAL+++
Sbjct: 1   MQPLVFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERALVLRVRPERLEDADPEALEVN 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPS 121
           G       D  S     +E       + A    HN  FD  F+ A    +   P  LD  
Sbjct: 61  GYRRRAWADAVSLGDAMAELAPML--EGAVLAGHNVAFDRRFLEAAWDYVGHRPENLD-H 117

Query: 122 RIIDTLSIARRKHPSSRND---LNSLCKRYGI 150
             +DT ++A     +   D   L  +C   G+
Sbjct: 118 HALDTAALAFPLLMAGEIDSLSLTPVCAHLGV 149


>gi|184200651|ref|YP_001854858.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila
           DC2201]
 gi|183580881|dbj|BAG29352.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila
           DC2201]
          Length = 193

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 14/155 (9%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSEFWD 85
             +G V + D    +  + +   P G     P  +++HGI    +   P+F       WD
Sbjct: 21  CALGVVRVRDGQVVDTRYSLIRPPAGHDAFEPGNVRIHGIRPAEVTHAPTFD----RLWD 76

Query: 86  FFNEQ------NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN 139
           +  E       +A  +AHNA FD G + A  +   +DP  P     TL +AR  +     
Sbjct: 77  WMCENITPEDPDAVLVAHNAVFDTGVVKAANRACGRDP-RPWDYACTLRLARAAYTLRSY 135

Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            L S  +  G  +     H AL D+   + + + +
Sbjct: 136 ALPSASRAAGAEVE--DHHNALSDALACAGIVLDL 168


>gi|149195011|ref|ZP_01872104.1| DNA polymerase III, epsilon chain [Caminibacter mediatlanticus
           TB-2]
 gi|149134932|gb|EDM23415.1| DNA polymerase III, epsilon chain [Caminibacter mediatlanticus
           TB-2]
          Length = 274

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           VFD ETT +      II     ++ +D  +T   +++ L P   K S EA ++H I  E 
Sbjct: 106 VFDTETTDIYG---YIISYAFVIQDMDSLETKEIYEL-LNPKA-KISEEAYEVHKIKQED 160

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           L+DKP+F        D FN  +   + HN  FD G +  EL+R    P
Sbjct: 161 LEDKPTFEEKKEYILDLFNSVDM-IVGHNVFFDFGVLKRELERAKHFP 207


>gi|239918000|ref|YP_002957558.1| DNA polymerase III, epsilon subunit [Micrococcus luteus NCTC 2665]
 gi|281415824|ref|ZP_06247566.1| DNA polymerase III subunit epsilon [Micrococcus luteus NCTC 2665]
 gi|239839207|gb|ACS31004.1| DNA polymerase III, epsilon subunit [Micrococcus luteus NCTC 2665]
          Length = 228

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 11/159 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD---- 67
           FD+ETTG D +   I+    V + ++ +   + +  + P G     EA ++HG+T     
Sbjct: 11  FDLETTGRDPRTALIVTATLVMVDEHGRAASSAEWLVDP-GVPIPAEAAEVHGVTTERAQ 69

Query: 68  -EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +      + I     D F       +A N  +D   ++ E +R    PL+   +ID 
Sbjct: 70  AEGMPAAQGVTEITETLRDLFA-AGIPVVAFNGVYDFTVMDREARRHGLTPLEARPVIDP 128

Query: 127 LSIARR--KHPSSRNDLNSLCKRYGITI--SHRSKHGAL 161
             + ++  +    +  L+++ + YG+T+  +H S   AL
Sbjct: 129 FVLDKQVDRFRKGKRTLSAVSEHYGVTLENAHTSAADAL 167


>gi|303235624|ref|ZP_07322231.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
 gi|302484071|gb|EFL47059.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
          Length = 893

 Score = 44.7 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 18/151 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-------GRKNSPEALKL 62
           +VFD ETTGLD   D IIEI A+ L +         +++  N       G   +P    L
Sbjct: 513 VVFDTETTGLDVYEDDIIEIAAIRLHNGKPVGEPLDLYIETNRPILEKLGENENP----L 568

Query: 63  HGITDEFLKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD- 119
           + I  E L        +  F  FW++  +  A  + HN  +D   ++  L R  +D ++ 
Sbjct: 569 YPIYHEKLAKGELLQPNEAFQLFWNYVGD--ATLLGHNVMYDRNILHHNLLRHAQDCMEN 626

Query: 120 -PSRIIDTLSIARRKHPS-SRNDLNSLCKRY 148
             + + D+L I R   P+     L +L +R+
Sbjct: 627 HANPVFDSLKIMRLLQPNLPSYKLETLLERF 657


>gi|56751271|ref|YP_171972.1| hypothetical protein syc1262_c [Synechococcus elongatus PCC 6301]
 gi|81299062|ref|YP_399270.1| exonuclease [Synechococcus elongatus PCC 7942]
 gi|56686230|dbj|BAD79452.1| unknown protein [Synechococcus elongatus PCC 6301]
 gi|81167943|gb|ABB56283.1| Exonuclease [Synechococcus elongatus PCC 7942]
          Length = 256

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 13/154 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69
           V D+ETTG      R+IE+G ++          FQ     N     PEA+ +  GIT + 
Sbjct: 24  VVDVETTGFKPPQARVIELGILQATLAEGIQ--FQQAELLNPGIPIPEAIAQFTGITTDL 81

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128
           +       S+          Q    +AHN  FD  F+ AE Q++  D    P+  + T+ 
Sbjct: 82  IATADPPESVLPPL--LPRLQTGILVAHNLPFDYRFLTAEYQQLGLDFERSPTEQLCTVQ 139

Query: 129 IARR---KHPSSRNDLNSLCKRYGITI--SHRSK 157
           ++R+     PS    L  L + +G  +  SHR+ 
Sbjct: 140 MSRQLLADLPS--RSLPQLVQHFGFPVGQSHRAA 171


>gi|289705138|ref|ZP_06501542.1| exonuclease [Micrococcus luteus SK58]
 gi|289558166|gb|EFD51453.1| exonuclease [Micrococcus luteus SK58]
          Length = 228

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 11/159 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD---- 67
           FD+ETTG D +   I+    V + ++ +   + +  + P G     EA ++HG+T     
Sbjct: 11  FDLETTGRDPRTALIVTATLVMVDEHGRAASSAEWLVDP-GVPIPAEAAEVHGVTTERAQ 69

Query: 68  -EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +      + I     D F       +A N  +D   ++ E +R    PL+   +ID 
Sbjct: 70  AEGMPAAQGVAEITETLRDLFA-AGIPVVAFNGVYDFTVMDREARRHGLTPLEARPVIDP 128

Query: 127 LSIARR--KHPSSRNDLNSLCKRYGITI--SHRSKHGAL 161
             + ++  +    +  L+++ + YG+T+  +H S   AL
Sbjct: 129 FVLDKQVDRFRKGKRTLSAVSEHYGVTLENAHTSAADAL 167


>gi|308050117|ref|YP_003913683.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
 gi|307632307|gb|ADN76609.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
          Length = 223

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+E TGLD + D I+ I AV ++       +++   +  +G     ++  +HGI D 
Sbjct: 38  LALDLELTGLDVRQDAILSIAAVPIIRGRLVLAQSWHQLVSIDG--GVGQSATIHGIHDR 95

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D                      + H+   D+GF+ A  Q      L P ++IDTL 
Sbjct: 96  HLTDAQPLEQALLAL--LPQLAGRVLVCHHGGLDLGFLQAGFQHHFGQGL-PLKVIDTLK 152

Query: 129 IARRK 133
           I +R+
Sbjct: 153 IEQRR 157


>gi|158335553|ref|YP_001516725.1| exonuclease [Acaryochloris marina MBIC11017]
 gi|158305794|gb|ABW27411.1| exonuclease [Acaryochloris marina MBIC11017]
          Length = 168

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 10/163 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   D + D    IG + + +    +R+   FL    R+   +   +HGIT   
Sbjct: 11  VAIDFETA--DYQRDSACAIGVIRVENDQIVDRSH--FLIRPPRQKF-QFTYIHGITWSD 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K  P+F+ ++      F   +    AHNA FD   +NA  Q    DP+ P   + T+ +
Sbjct: 66  VKHHPTFAELWPNLQPKFAGSDFV-AAHNANFDRSVLNACCQAAELDPM-PLPFLCTVKL 123

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           AR         L ++C+   I + H   H AL D+   + + I
Sbjct: 124 AREVWNIRPTKLPNVCEFLDIPLQH---HQALSDAEACAKIVI 163


>gi|163937886|ref|YP_001642772.1| exonuclease RNase T and DNA polymerase III [Bacillus
           weihenstephanensis KBAB4]
 gi|163865741|gb|ABY46797.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           weihenstephanensis KBAB4]
          Length = 271

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 13/149 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG-ITDEF 69
           VFD+ETTGLD KN++++EI A+   D  +      + +  N  K  P+ L  +  + D  
Sbjct: 16  VFDLETTGLDYKNEQVVEIAAIR-TDLEQELGRMHILVKLNEGKKLPDFLVDNTDLRDYM 74

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L +             F    N+  +AH A FD  ++   L       + P   + T SI
Sbjct: 75  LVNGMVEHQALINLMAFMG--NSIVVAHYAPFDFAYLFKAL-------IAPELFLCTRSI 125

Query: 130 ARRKHPSSRNDLNSLCKRYGITI--SHRS 156
            R   P     L    +R G+ +  +HR+
Sbjct: 126 ERLLTPDKSASLAPTAERRGVKLEGAHRA 154


>gi|323358024|ref|YP_004224420.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
 gi|323274395|dbj|BAJ74540.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
          Length = 405

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ETTGL   K+DRI+E+  V +         ++  + P        A ++HGI+   
Sbjct: 7   VIDLETTGLFPQKHDRIVEVAIVHVSPAGVVEGVWETLVNP---MRDMGAQRIHGISAAA 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
               P FS++          +    +AHNA FD  F+   ++       D +  + T+ +
Sbjct: 64  AARAPEFSALAPSIASLLRGRVP--VAHNASFDARFLAHSMEHAGLACPDLAYWMCTMQL 121

Query: 130 A 130
           A
Sbjct: 122 A 122


>gi|269218897|ref|ZP_06162751.1| putative DNA polymerase III epsilon subunit [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269212008|gb|EEZ78348.1| putative DNA polymerase III epsilon subunit [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 240

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 19/155 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD ETTG+D K DR++    V + +   + R    +L   G +    A  +HGIT E 
Sbjct: 14  IGFDTETTGIDPKRDRLVTCSLVAVTEEGVSKR---YWLADPGVEIPERAGAVHGITTER 70

Query: 70  LK--DKPSFSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRINKDPLDPSR-- 122
            +   +PS   +  E      E        +A NA +D   + +EL R +  P    R  
Sbjct: 71  ARAEGRPS-KEVLEEVAALLAEHMGRGHPAVAFNATYDFTLLESELDR-HGLPTLAERLG 128

Query: 123 -----IIDTLSIARR--KHPSSRNDLNSLCKRYGI 150
                ++D   + R   ++   +  L  LC+ YG+
Sbjct: 129 GEVFPVVDPYLLDRSADRYRKGKRRLEDLCRHYGV 163


>gi|266622988|ref|ZP_06115923.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
 gi|288865254|gb|EFC97552.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
          Length = 595

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 8/77 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66
           +VFDIETTG   + +RIIEIGAV++++   T+R F  F+ P    + P   E  +L  I 
Sbjct: 524 VVFDIETTGFSPEKNRIIEIGAVKVVNGVITDR-FSTFVNP----DVPIPFEIEQLTSIN 578

Query: 67  DEFLKDKPSFSSIFSEF 83
           D  +   P    I  +F
Sbjct: 579 DNMVLSYPKIDVILPQF 595


>gi|227494840|ref|ZP_03925156.1| DNA polymerase III subunit epsilon [Actinomyces coleocanis DSM
           15436]
 gi|226831292|gb|EEH63675.1| DNA polymerase III subunit epsilon [Actinomyces coleocanis DSM
           15436]
          Length = 232

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 18/161 (11%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD---- 67
           FD+ETTG+D+  DRI+   + E+   S+      +   P G +    A+ +HGIT+    
Sbjct: 11  FDLETTGVDTARDRIV-TASYEVRCGSEVLEQVTLLFNP-GVEIPQSAIDVHGITNERAQ 68

Query: 68  -EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR---- 122
            E L  +     + ++   + +E  A  +  N +FDV  +  EL+R    P    R    
Sbjct: 69  AEGLDPRVGLEQLAAKLVSYLSE-GAPLVGFNVQFDVTLLENELRRYGL-PTVAERLGGR 126

Query: 123 ---IIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKH 158
              I+D L + R   +    +  L  L + YGI +     H
Sbjct: 127 FAPIVDPLVLDRELDRWRKGKRKLVDLLEVYGIAVDPDELH 167


>gi|54298969|ref|YP_125338.1| ribonuclease T [Legionella pneumophila str. Paris]
 gi|53752754|emb|CAH14189.1| ribonuclease T [Legionella pneumophila str. Paris]
          Length = 207

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 23/191 (12%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRK 54
           KN+ R    +V D+ET G+D + + ++E+  V LLD        K +  F+  L   G +
Sbjct: 13  KNRFRGFLPVVVDVETAGIDPQKNALLEMCIV-LLDMDEQGLLKKESSYFEHILPFPGAE 71

Query: 55  NSPEALKLHGITDEF------LKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGF 105
              ++L  + I D +      + ++ +   +F    D   +   Q A  + HNA FD+ F
Sbjct: 72  LDQKSLAFNQI-DPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLF 130

Query: 106 INAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           I A ++R   K P       DT ++A          L    +  G+    +  H A+ D+
Sbjct: 131 IKAAIKRTGIKSPFHAFTCFDTATLAGLIF--GETVLAKAVQAAGLHFDSQEAHSAIYDA 188

Query: 165 HLLSDVYIKMM 175
              +D++  M+
Sbjct: 189 EKTADLFCLMI 199


>gi|218672255|ref|ZP_03521924.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli GR56]
          Length = 197

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      +G +  ++  +  R  +  + P   + S   + +HGI 
Sbjct: 1   MKTIAIDFETA--NEQRGSACSVG-LAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
            E ++D P F  +  EF D F  + A  IAHNA FD     A L
Sbjct: 58  PEDVEDAPEFPEVMDEFHDDF--RGATMIAHNAAFDFSVWRASL 99


>gi|116629923|ref|YP_815095.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus gasseri ATCC 33323]
 gi|282851483|ref|ZP_06260848.1| exonuclease [Lactobacillus gasseri 224-1]
 gi|311110442|ref|ZP_07711839.1| exonuclease [Lactobacillus gasseri MV-22]
 gi|116095505|gb|ABJ60657.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus gasseri ATCC 33323]
 gi|282557451|gb|EFB63048.1| exonuclease [Lactobacillus gasseri 224-1]
 gi|311065596|gb|EFQ45936.1| exonuclease [Lactobacillus gasseri MV-22]
          Length = 177

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 5/115 (4%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGIT E +K+ P+ + ++ +    + +      AHNA+FD   +   L R N  P  
Sbjct: 50  IRIHGITAEDVKNAPTMAEVWPKIKKLY-QPGMLVAAHNARFDCRVMEKSLARYNI-PAP 107

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               IDTL+ ++   P+  N  L+++ +   I + H   H AL DS   + + I+
Sbjct: 108 HYFAIDTLATSKAFEPNLPNHKLDTVSEALDINLWHH--HNALSDSEACAGILIE 160


>gi|242371797|ref|ZP_04817371.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           M23864:W1]
 gi|242350498|gb|EES42099.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           M23864:W1]
          Length = 213

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 11/156 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   + K   I  +G V+++D ++   +F   + P         + +HGI  E 
Sbjct: 36  VALDFETA--NGKRTSICSVGMVKVID-NQITESFYTLVNPFDYFTETN-INVHGIKPED 91

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128
           ++  PSF  ++     F ++     +AHNA FD+  ++  L+++N +   PS     +  
Sbjct: 92  VEGAPSFEYVYPYMLQFIDQ--LPVVAHNAAFDMNVLHQSLKQLNIE--TPSMTYFCSYQ 147

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +A+R   + R  L  L   Y +       H AL D+
Sbjct: 148 LAKRTIDAYRYGLKHLMNHYKLDF--HGHHDALNDA 181


>gi|262274601|ref|ZP_06052412.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
 gi|262221164|gb|EEY72478.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
          Length = 245

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 5/121 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTGLD   + II IG V         R  + ++    R    E++  HGIT   
Sbjct: 56  VALDLETTGLDPSQNDIISIGLVPFTLDRIYCRDAKHWIVKPRRPLEAESVVFHGITHSD 115

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTLS 128
           + D P    I  E     + +    +AH  + +  F+ A ++ R+ +  L P  ++DTL 
Sbjct: 116 VSDAPDLRRILEEV--LASLEGKIVVAHYRRIERDFLEAAVESRLGESLLFP--VVDTLE 171

Query: 129 I 129
           I
Sbjct: 172 I 172


>gi|170738412|ref|YP_001767067.1| DNA polymerase III subunit epsilon [Methylobacterium sp. 4-46]
 gi|168192686|gb|ACA14633.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 223

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 53/104 (50%), Gaps = 4/104 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGLD + D I+ + A+ +  D   T+ + +  +  + R +SPEA+K+H + + 
Sbjct: 32  VALDCETTGLDPRRDEIVAVAAIRIRGDRILTSESLRATVR-SDRPSSPEAIKVHRLLNA 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            +++     ++      F   +    + +  +FDV  ++  ++R
Sbjct: 91  EIREAEPLDAVLPALLRFIGGR--PIVGYYTEFDVRMLDKSVRR 132


>gi|260062630|ref|YP_003195710.1| DNA polymerase III subunit epsilon [Robiginitalea biformata
           HTCC2501]
 gi|88784197|gb|EAR15367.1| DNA polymerase III, epsilon subunit [Robiginitalea biformata
           HTCC2501]
          Length = 222

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 15/174 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTG   ++DRI+ IGA+ +     +   + + F+     +    ++ +HGI   
Sbjct: 35  VVLDTETTGFSPQHDRILSIGALRVSQGRIRVKESLERFV--KQERFDRASVPIHGILRT 92

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              ++ +     +E  DF  +  +  + H+  FD   I A  QR    PL  + +IDT  
Sbjct: 93  GSSERVTEREALAELLDFTGQ--SPVVGHHISFDQAMIQAACQRSGLGPLR-NPLIDTGL 149

Query: 129 IARR---KHP----SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +      K P         L+ L  ++   IS + +H AL D+++ +  ++ ++
Sbjct: 150 LYGHTLIKSPLLIKKDHYTLDELADKF--DISCKDRHTALGDAYITAIAFLNIL 201


>gi|315644054|ref|ZP_07897224.1| DNA polymerase III subunit epsilon [Paenibacillus vortex V453]
 gi|315280429|gb|EFU43718.1| DNA polymerase III subunit epsilon [Paenibacillus vortex V453]
          Length = 397

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 12/171 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           VFD+E T    +N  ++EIGAV +     +  +TF  ++ P+G    P A+   GI +  
Sbjct: 27  VFDLEATDDQVENAEVVEIGAVRMDSTGIQEEQTFHTYIKPSGPIPQPIAVS-TGIYNAD 85

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRIN-KDPLDPSRIIDTL 127
           ++  P F   +  F  F NE    ++ +   +F +  +  E  R    +P +P   ID  
Sbjct: 86  VEGSPRFPKGYGMFTGFANE--CIFVTYGGYEFVLPLLQRECARHGLPEPANPC--IDIK 141

Query: 128 SIARRKHPSSRNDLN--SLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMM 175
           ++    HP   +++    +   YG  T SH+S +  + +  L+  +++ MM
Sbjct: 142 AMFAGLHPEVEDEITMEMMMDYYGFETTSHKSGN-RIGNYMLIGHIWMDMM 191


>gi|86145828|ref|ZP_01064156.1| DNA polymerase III, epsilon chain [Vibrio sp. MED222]
 gi|85836283|gb|EAQ54413.1| DNA polymerase III, epsilon chain [Vibrio sp. MED222]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 15/186 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D+ETTGLDS+ D I+ +G V+++       + +     N  + + E   ++ IT + 
Sbjct: 52  IVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAKHIYLDNDSQINAETAVINHITPQM 111

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L++    +SI      FF     + I AH    +  FI+  L R       P   +DTL 
Sbjct: 112 LEEG---ASIHDAMLTFFEAAKGKIIVAHACVVEEKFISQYLLRCYGLRQLPLLWLDTLC 168

Query: 129 IARRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGS 179
           I +    +  N       L     RYG  +   + H AL D+   +++++   K +V   
Sbjct: 169 IEKSMEKAISNHEEVDLTLAGTRDRYG--LPEYNSHNALADAVSTAELFLAQQKRVVPND 226

Query: 180 QINFGF 185
           ++   F
Sbjct: 227 EVTLSF 232


>gi|83649371|ref|YP_437806.1| putative exonuclease [Hahella chejuensis KCTC 2396]
 gi|83637414|gb|ABC33381.1| putative exonuclease [Hahella chejuensis KCTC 2396]
          Length = 189

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 17/174 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGLD + + +IE+  +++    +    F   + P       EA  +HGIT E 
Sbjct: 19  VVLDTETTGLDDQAE-VIEVSVMDM----RGKVLFDQLVRPL-NPVPDEAADIHGITSES 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L DKP+F  ++       + +    +A+NA FD   +           ++        + 
Sbjct: 73  LADKPNFPDVYHSLKRVISGKTV--VAYNADFDSRLLMQTCAAYGLPVIEADWQCAMNAY 130

Query: 130 AR-RKHPSS------RNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKM 174
            R RK P +      R  L     + GI +  +HR+         ++  VY K+
Sbjct: 131 TRYRKEPDAKRGGYRRQSLAKAAAQMGIEVHGAHRALADCFTTVEVIGSVYSKL 184


>gi|291532696|emb|CBL05809.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Megamonas hypermegale ART12/1]
          Length = 142

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 61/113 (53%), Gaps = 9/113 (7%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +K+HGI  + +++ P+F+ I+++   + + +    IAHNA FD+G + + + + N     
Sbjct: 8   IKIHGIIPQMVENAPTFADIWNDLRMYLDNRIV--IAHNAFFDMGVLRSCIWKYNLA--K 63

Query: 120 PS-RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           P  +   T+ IAR+  P   N  LN+L + + I   H   H AL D+ + + +
Sbjct: 64  PQFKTACTVQIARKVWPQLPNHKLNTLGEFFQIQFKH---HDALDDAKVCAKI 113


>gi|311741567|ref|ZP_07715391.1| probable DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303737|gb|EFQ79816.1| probable DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 442

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 12  FDIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITD 67
            D     +++ ND    I +IGAV   D  +T+    +   P G ++  +  + +HGIT 
Sbjct: 98  LDFTAVDVETANDNWGSICQIGAVRFRDGQETDSRSWLCTPPPGLEHFADINVSIHGITA 157

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           + +K  P+F+ +  E +DF        +AHNA+FD
Sbjct: 158 DDVKGAPAFADVAKELFDFLGGDV--LVAHNAQFD 190


>gi|332637276|ref|ZP_08416139.1| DNA-directed DNA polymerase III subunit epsilon [Weissella cibaria
           KACC 11862]
          Length = 177

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 7/106 (6%)

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K+HGIT+  + D P F  ++ +   F+   N   IAHNA FD G +   L         P
Sbjct: 51  KIHGITEADVVDAPKFPEVWEQIKQFYTA-NQLVIAHNAPFDNGVLRETLGHYGISA--P 107

Query: 121 SRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164
             + +DT+  +R+ +P   N  LN++     I + H   H AL D+
Sbjct: 108 HYLSLDTVRTSRKLYPQLPNHKLNTVADALQIDLKHH--HNALDDT 151


>gi|300779659|ref|ZP_07089515.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
 gi|300533769|gb|EFK54828.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
          Length = 959

 Score = 44.3 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ TTG    +DRI+E+G V L    +   T++  + PN          +H +T   L
Sbjct: 9   VIDVVTTGFGG-SDRIVEVGVVLLDQQLREQGTWETLVQPN---RDIATCHVHKLTATHL 64

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           K+ P++  +  E       +    +AHNA F+  F++ E  R+
Sbjct: 65  KNAPTWEEVAPELAQVIRGRIG--VAHNASFEKRFLSKEFCRV 105


>gi|160689454|gb|ABX45585.1| polymerase C [Bacillus pumilus]
          Length = 259

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160
           D+GF+N   +R+ K     + +IDTL + R  +P  +N  LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNTAYKRLLKTDKASNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQINFGF 185
           + D+     + +KM+   ++ +  +
Sbjct: 59  IYDAEATGYLMLKMLKDAAEKDIAY 83


>gi|148361305|ref|YP_001252512.1| ribonuclease T [Legionella pneumophila str. Corby]
 gi|296108645|ref|YP_003620346.1| ribonuclease T [Legionella pneumophila 2300/99 Alcoy]
 gi|148283078|gb|ABQ57166.1| ribonuclease T [Legionella pneumophila str. Corby]
 gi|295650547|gb|ADG26394.1| ribonuclease T [Legionella pneumophila 2300/99 Alcoy]
          Length = 207

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 23/191 (12%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRK 54
           KN+ R    +V D+ET G+D + + ++E+  V LLD        K +  F+  L   G +
Sbjct: 13  KNRFRGFLPVVVDVETAGIDPQKNALLEMCIV-LLDMDEQGLLKKESSYFEHILPFPGAE 71

Query: 55  NSPEALKLHGITDEF------LKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGF 105
              ++L+ + I D +      + ++ +   +F    D   +   Q A  + HNA FD+ F
Sbjct: 72  LDQKSLEFNQI-DPYQPLRFAVDEQIALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLF 130

Query: 106 INAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           I A ++R   K P       DT ++A          L    +  G+    +  H A+ D+
Sbjct: 131 IKAAIKRTGIKSPFHAFTCFDTATLAGLIF--GETVLAKAVQTAGLHFDSQEAHSAIYDA 188

Query: 165 HLLSDVYIKMM 175
              +D++  M+
Sbjct: 189 EKTADLFCLMI 199


>gi|116253032|ref|YP_768870.1| DNA polymerase/exonuclease [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257680|emb|CAK08778.1| putative DNA polymerase/exonuclease [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 196

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 7/149 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      +G   + D  +  R  +  + P   + S   + +HGI 
Sbjct: 1   MKTIAIDFETA--NEQRGSACSVGLAWIED-GRVTRVEERLIRPRDMRFSGMNIAIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D P F  +  EF + F  + A  IAHNA FD     A L  + +        + +
Sbjct: 58  PEHVEDAPEFPEVMDEFEEDF--RGATMIAHNAAFDFSVWRASLD-LYRQSYPELTYLCS 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISH 154
           L +A+R  P    + LN + +  G+   H
Sbjct: 115 LKMAQRIWPHFLSHRLNLIAEHLGLRFVH 143


>gi|227889650|ref|ZP_04007455.1| DNA-directed DNA polymerase III [Lactobacillus johnsonii ATCC
           33200]
 gi|268319793|ref|YP_003293449.1| DNA polymerase III epsilon subunit [Lactobacillus johnsonii FI9785]
 gi|227849793|gb|EEJ59879.1| DNA-directed DNA polymerase III [Lactobacillus johnsonii ATCC
           33200]
 gi|262398168|emb|CAX67182.1| DNA polymerase III epsilon subunit [Lactobacillus johnsonii FI9785]
          Length = 177

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 5/115 (4%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGIT E +K+ P+ + ++ +    + +      AHNA+FD   +   L R N  P  
Sbjct: 50  IRIHGITAEDIKNAPTMAEVWPKIKKLY-QPGMLVAAHNARFDCRVMEKSLARYNI-PAP 107

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               IDTL+ ++   P   N  L+++ +   I + H   H AL DS   + + I+
Sbjct: 108 HYFAIDTLATSKAFEPYLPNHKLDTVSEALNINLWHH--HNALSDSEACAGILIE 160


>gi|262067765|ref|ZP_06027377.1| putative exonuclease [Fusobacterium periodonticum ATCC 33693]
 gi|291378491|gb|EFE86009.1| putative exonuclease [Fusobacterium periodonticum ATCC 33693]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 25/173 (14%)

Query: 7   MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLH 63
           M KI+F D ET G++ +   +I++  +  +D  K    F  ++ P  N   N  +AL++ 
Sbjct: 1   MNKIIFIDTETGGVNPEKATLIQLSGIIRID-KKDVEKFNFYIKPFKNSEVNE-KALEVQ 58

Query: 64  G------ITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQR- 112
           G       TD+++++K     F ++  ++ D ++  +   +A +N +FDV  + A  QR 
Sbjct: 59  GRTLEELKTDKYVEEKEVYKQFINLLDKYIDKYDRTDKFIVAGYNVRFDVDILKAFFQRH 118

Query: 113 --------INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI-SHRS 156
                   ++   LDP   I  L IA        N L + CK +GI + +H S
Sbjct: 119 GNNFLFSYLDSSMLDPLYSIRLLQIAEILPVLENNKLETWCKHFGIELKAHDS 171


>gi|259908234|ref|YP_002648590.1| exodeoxyribonuclease X [Erwinia pyrifoliae Ep1/96]
 gi|224963856|emb|CAX55358.1| DNA exonuclease X [Erwinia pyrifoliae Ep1/96]
 gi|283478165|emb|CAY74081.1| exodeoxyribonuclease X [Erwinia pyrifoliae DSM 12163]
          Length = 221

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V+++     N      + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGLQGG---VVEVASVDVISGQILN-PMSDLISPD-RPISRQAMAVHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP+       +       +  ++AHNA FD       L  ++ D       I T+++A
Sbjct: 59  RGKPAIEQAIGRY-----HGSPFYVAHNASFD----RRMLPEMHGD------WICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L +   + +S  +    H AL D ++ + + +++M
Sbjct: 104 RRLWPGLKYTNEALRQSLQLEVSPPADLHAHRALYDCYVTAALLMRIM 151


>gi|154246978|ref|YP_001417936.1| DNA polymerase III subunit epsilon [Xanthobacter autotrophicus Py2]
 gi|154161063|gb|ABS68279.1| Exonuclease RNase T and DNA polymerase III [Xanthobacter
           autotrophicus Py2]
          Length = 298

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 16/104 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-----PEALKLHG 64
           +V D+ETTGLD + D IIE+ A+    Y      F V     G +       PE   + G
Sbjct: 45  MVVDVETTGLDPQRDEIIEL-AMTPFSYGLDGTIFSVGDSFQGLRQPSEPILPEITAITG 103

Query: 65  ITDEFLKDK---PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           IT+E +  +   P+  + F+     F       IAHNA FD  F
Sbjct: 104 ITNEMVAGQIIDPAVVATFAAPASLF-------IAHNAAFDRRF 140


>gi|300361318|ref|ZP_07057495.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           gasseri JV-V03]
 gi|300353937|gb|EFJ69808.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           gasseri JV-V03]
          Length = 177

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 5/115 (4%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGIT E +K+ P+ + ++ +    + +      AHNA+FD   +   L R N  P  
Sbjct: 50  IRVHGITAEDVKNAPTMAEVWPKIKKLY-QPGMLVAAHNARFDCRVMEKSLARYNI-PAP 107

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               IDTL+ ++   P   N  L+++ +   I + H   H AL DS   + + I+
Sbjct: 108 HYFAIDTLATSKAFEPDLPNHKLDTVSEALNINLWHH--HNALSDSEACAGILIE 160


>gi|254495198|ref|ZP_05108122.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
 gi|85819550|gb|EAQ40707.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
          Length = 461

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTG   K  +I EI ++ + D  K    F   + P  +   P    L GIT+  +
Sbjct: 4   VIDIETTGNGFKGQKITEI-SIFVFDGKKIIDEFTSLINPE-QNIPPFITNLTGITNAMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  I  +  +    ++  ++AHN  FD   I  E + +  D     + + T+ ++
Sbjct: 62  RYAPKFHEIAKKVEEL--TRDTIFVAHNVNFDYNIIRDEFKSLGFD--FKRKKLCTVRLS 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R+  P  R+  L ++C    I I+ R  H A  D+   ++++ +++
Sbjct: 118 RKIMPGLRSYSLGNICIDENIPINGR--HRAKGDAEATTELFRRLI 161


>gi|290475494|ref|YP_003468382.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Xenorhabdus bovienii SS-2004]
 gi|289174815|emb|CBJ81616.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Xenorhabdus bovienii SS-2004]
          Length = 208

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A+ L +D   +     T    + P  G    P AL   G
Sbjct: 12  VVIDVETGGFNAQTDALLEIAAITLKMDEEGWLMPADTLHFHIDPFEGANLDPAALAFTG 71

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF        + N   A  +AHNA FD  F+ A  +R  + 
Sbjct: 72  IDPTNPLRGAVSEYTALHAIFKMIRKGMKDNNCNRAIIVAHNASFDHNFVMAAAERSGLK 131

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT +++       +  L   C    I       H AL D+   + ++ ++
Sbjct: 132 RNPFHPFATFDTAALSGLV--LGQTILAKACITAEIPFDSNQAHSALYDTDRTALLFCEL 189

Query: 175 M 175
           +
Sbjct: 190 V 190


>gi|212634795|ref|YP_002311320.1| exonuclease [Shewanella piezotolerans WP3]
 gi|212556279|gb|ACJ28733.1| Exonuclease [Shewanella piezotolerans WP3]
          Length = 225

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 23/184 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV----FLCPNGRKNSPEALKLHGI 65
           +  D+E TGL+ + D+I+ IG V +      N   Q+    +   +   +  ++  +HGI
Sbjct: 43  MAIDLEMTGLNVQFDQILSIGMVPI-----QNGMLQLKDADYRLVSIEGSVGDSAAIHGI 97

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D  L+   S +   +  W     +    IAH+A  D+ F+ AE+ R   + +     ID
Sbjct: 98  VDGQLETAISANE--AMHWFLEKTKGHVLIAHHAPLDLCFLKAEIFRCFGEKMTFVS-ID 154

Query: 126 TLSIAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176
           T+S+ R    R+H   +     L++   RYG+ I   + H A +D+    ++ +  M  +
Sbjct: 155 TMSLERARILRQHEVIKEGSLRLDACRSRYGLPI--YAAHNAAVDALSCGELLLAQMASI 212

Query: 177 GGSQ 180
            G++
Sbjct: 213 AGAE 216


>gi|238853258|ref|ZP_04643643.1| DNA polymerase III alpha chain [Lactobacillus gasseri 202-4]
 gi|238834142|gb|EEQ26394.1| DNA polymerase III alpha chain [Lactobacillus gasseri 202-4]
          Length = 177

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 5/115 (4%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGIT E +K+ P+ + ++ +    + +      AHNA+FD   +   L R N  P  
Sbjct: 50  IRVHGITAEDVKNAPTMAEVWPKIKKLY-QPGMLVAAHNARFDCRVMEKSLARYNI-PAP 107

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               IDTL+ ++   P+  N  L+++ +   I + H   H AL DS   + + I+
Sbjct: 108 HYFAIDTLATSKAFEPNLPNHKLDTVSEALDINLWHH--HNALSDSEACAGILIE 160


>gi|290963218|ref|YP_003494400.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260652744|emb|CBG75877.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 215

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 14/172 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            V D+ETTGLD + D II +GAV + +       +F   + P     S  ++K+HG+   
Sbjct: 24  CVIDLETTGLDLRRDEIISVGAVPVREGRIDLGDSFYSLVRPRC-AVSVASIKVHGLRPG 82

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P  +++        + +    +AH A  +  F++     +    +    ++DT +
Sbjct: 83  DLDSAPDPATVGQALSPRLSGRVV--VAHAAWIERAFLSRTQSTVGWSQV--RAVVDTAA 138

Query: 129 IARRK-----HPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +AR       H S R   L  L +R G+ +   + H AL D+   + V++ +
Sbjct: 139 LARATGCWAGHDSGREPPLELLARRLGLPVC--TPHHALGDALTTATVFLAL 188


>gi|319426754|gb|ADV54828.1| Exonuclease RNase T and DNA polymerase III [Shewanella putrefaciens
           200]
          Length = 223

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 27/168 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +  D+E TGLD   D+I+ IG V +      L+ ++  +  Q+      R +  ++  +H
Sbjct: 38  MAMDLEMTGLDPLQDQILSIGLVPIEHGVIPLEGAQ-QKLVQI------RGSVGQSATIH 90

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR 122
           GI D  L    +     +  W     +    +AH++  D  F+  ++  I ++    PS 
Sbjct: 91  GILDNHLVQAVTIEDAMA--WFIAKTRGRVLVAHHSPLDCRFLQQDILAIYHQAVFLPS- 147

Query: 123 IIDTLSIARRK-----HPSSRNDLN-SLCK-RYGITISHRSKHGALLD 163
            IDTL + +R+     H   +  L    C+ RYG+ +   S H AL D
Sbjct: 148 -IDTLMLEKRRLLRGHHAIKKGSLRLGACRERYGLPVY--SAHSALTD 192


>gi|329667640|gb|AEB93588.1| DNA-directed DNA polymerase III [Lactobacillus johnsonii DPC 6026]
          Length = 177

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 5/115 (4%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGIT E +K+ P+ + ++ +    + +      AHNA+FD   +   L R N  P  
Sbjct: 50  IRIHGITAEDVKNAPTMAEVWPKIKKLY-QPGMLVAAHNARFDCRVMEKSLARYNI-PAP 107

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               IDTL+ ++   P   N  L+++ +   I + H   H AL DS   + + I+
Sbjct: 108 HYFAIDTLATSKAFEPYLPNHKLDTVSEALNINLWHH--HNALSDSEACAGILIE 160


>gi|227513634|ref|ZP_03943683.1| DNA-directed DNA polymerase III [Lactobacillus buchneri ATCC 11577]
 gi|227083150|gb|EEI18462.1| DNA-directed DNA polymerase III [Lactobacillus buchneri ATCC 11577]
          Length = 177

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +HGI  + + + P+F  ++      F   N   +AHNA FD   +   L+R   D L 
Sbjct: 50  INVHGIHKQDVANAPTFPELWDHIAPLFTA-NKLVVAHNASFDNSVLKRTLERY--DLLL 106

Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P  + +DTL  +++ +P   N  LN++C    I + H   H AL DS   +++ +
Sbjct: 107 PHFLTLDTLKTSKQFYPQMVNHKLNTVCDELHIELEHH--HNALDDSVACANILL 159


>gi|311108015|ref|YP_003980868.1| exonuclease family protein [Achromobacter xylosoxidans A8]
 gi|310762704|gb|ADP18153.1| exonuclease family protein [Achromobacter xylosoxidans A8]
          Length = 207

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 10/151 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITD- 67
           IV D+ETTGL +    I+E  AV + +     R +   +    R   P  + +L GIT  
Sbjct: 40  IVADLETTGLSTATCEILEFAAVRVGEAGALEREYTQVV--RTRGPVPSFISRLTGITQA 97

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E  +D       FS F DF  +    +  HNA FD  F+ A   +      + +    TL
Sbjct: 98  EVDRDGVPVVQAFSSFLDFVEDLPVFF--HNASFDRRFLGAAADQTGLPFANSTHC--TL 153

Query: 128 SIARRKHPS-SRNDLNSLCKRYGIT-ISHRS 156
           ++ARR  P    + L  L +  G +  +HR+
Sbjct: 154 ALARRAWPELPSHKLEILARHVGASDPTHRA 184


>gi|113969858|ref|YP_733651.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4]
 gi|113884542|gb|ABI38594.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4]
          Length = 228

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+E TGLD  ND+I+ IG V + + +    + Q  L    + +  ++  +HGI D  
Sbjct: 43  MAMDLEMTGLDPLNDQILSIGLVPIENGTIPLGSAQQKLV-QIQGSVGQSATIHGILDNH 101

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLS 128
           L +  S     +  W     +    +AH++  D  F+  ++  I ++  + P+  IDTL 
Sbjct: 102 LTEAVSIEEAMA--WFVSQTRGHILVAHHSPLDCRFLQQDILSIYHQAIVIPA--IDTLL 157

Query: 129 IAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGS 179
           + +    R+H   +     L +  +RYG+ I     H AL D+    ++ +  +  +GG+
Sbjct: 158 LEKHRLLREHSVLKEGSLRLGACRERYGLPI--YGAHSALTDALACGELLLAQVASMGGA 215

Query: 180 Q 180
           +
Sbjct: 216 E 216


>gi|229138336|ref|ZP_04266930.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST26]
 gi|228645101|gb|EEL01339.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST26]
          Length = 99

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 6/100 (6%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            +  +K  P F  +     +    Q A ++AHN  FD  F
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNF 99


>gi|183599959|ref|ZP_02961452.1| hypothetical protein PROSTU_03480 [Providencia stuartii ATCC 25827]
 gi|188022234|gb|EDU60274.1| hypothetical protein PROSTU_03480 [Providencia stuartii ATCC 25827]
          Length = 234

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 15/167 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ETTGLD + DRI+ IG V + D     ++ Q +   +      E   ++ IT E L 
Sbjct: 55  IDLETTGLDPEKDRILSIGMVTIADSKILLKSAQHYYVNDNEPVKAETAVINHITPEQLS 114

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           D  S     +    F +E   + I AH +  +  F++  L  I + PL      DTL+I 
Sbjct: 115 DGVSLPHAIA---SFLHEAKGKCILAHGSAIEHAFLSKAL-NIKELPL---LWFDTLNIE 167

Query: 131 RR--KHPS-SRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    H + +RND  L++L  RY   +     H AL D+   +++++
Sbjct: 168 KTLLSHKNINRNDFSLSALRSRY--QLPDYDAHNALSDAIATAELFL 212


>gi|89890222|ref|ZP_01201732.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7]
 gi|89517137|gb|EAS19794.1| DNA  polymerase III, epsilon subunit [Flavobacteria bacterium
           BBFL7]
          Length = 466

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 19/154 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL------KLHG 64
           V DIETTG     +R+ EI  V +   +  ++   +          PE L       L G
Sbjct: 10  VVDIETTGNRMTGNRMTEICIVRMRGDTILDKYSSLI--------DPEVLIPDYITTLTG 61

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I +  +   P F+ +  E  +F   ++  ++AHN  FD   +  E +R++ D     + +
Sbjct: 62  IDNAMVASAPVFADVAEEILNF--TKDYIFVAHNVNFDYNVLRNEFKRLHHDF--KRKKL 117

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSK 157
            T+ ++R   P  R+  L  LC   GI + +R +
Sbjct: 118 CTVRLSRELIPGMRSYSLGKLCDDIGIPLINRHR 151


>gi|213962688|ref|ZP_03390949.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena
           Capno]
 gi|213954683|gb|EEB66004.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena
           Capno]
          Length = 442

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 7/148 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG     + I EI   +   ++ T++ F   + P  R       KL GI ++ L
Sbjct: 4   ILDIETTGGKYDEEGITEIAIYQFDGHTITDQ-FISLINPE-RPIQDYVTKLTGINNKML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ P F  I     +    +    + HNA FD   +  E +R+  + +  +  + T+ ++
Sbjct: 62  RNAPKFYEIAKRIVEI--TEGCIIVGHNAAFDYRILQTEFRRLGYEYIKTT--LCTVELS 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK 157
           ++  P   +  L  L +  GI +S R +
Sbjct: 118 QQLIPDKESYSLGKLVRSLGIPMSERHR 145


>gi|163845121|ref|YP_001622776.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445]
 gi|163675844|gb|ABY39954.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 332

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTGL+   + IIEIGAV               TF     P+ +    E  ++ G
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEIARITG 132

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE +K +    +I  +  D    +    IAHNA FD  F+ 
Sbjct: 133 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 171


>gi|121603395|ref|YP_980724.1| DNA polymerase III subunit epsilon [Polaromonas naphthalenivorans
           CJ2]
 gi|120592364|gb|ABM35803.1| Exonuclease, RNase T and DNA polymerase III [Polaromonas
           naphthalenivorans CJ2]
          Length = 220

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+++ D II IGAV + D    T+   ++ + P  R+ S E++++H + ++
Sbjct: 43  VALDCETTGLNTRTDDIIAIGAVRIRDNRIMTSERLELLVRPEKRRLSAESVRVHRLREQ 102

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            +    S      +   F   +    + +  +FD+  IN
Sbjct: 103 DVAQGISADEAMMKLMYFIGSRPL--VGYYLEFDLAMIN 139


>gi|239832702|ref|ZP_04681031.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG
           3301]
 gi|239824969|gb|EEQ96537.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG
           3301]
          Length = 353

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTGL+   + IIEIGAV               TF     P+ R    +  ++ G
Sbjct: 95  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDICATFGALQQPS-RPIPADITRITG 153

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE ++ +    +I  E  D    +    IAHNA FD  F+ 
Sbjct: 154 ITDEMVRGQ----TIPREKLDALIAEADIIIAHNAGFDRPFLE 192


>gi|146300607|ref|YP_001195198.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
 gi|146155025|gb|ABQ05879.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
          Length = 198

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V   ET+GL+   D I+ +GA  ++D S      F+  L         + L+ +G+++E
Sbjct: 31  VVLSTETSGLNPNKDVILSLGAFSVIDDSIIIKENFEAVLL------QYKFLEDNGLSNE 84

Query: 69  FLKD----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI- 123
           F+ +    K   +     F +F    NA  + H+  FD+  +NA L+R++   L    + 
Sbjct: 85  FIIESKMTKMPEAEALEAFINFLG--NAVLVGHHINFDIEMLNAALERLDCGRLKNEALD 142

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ID +          +  LN LC+ Y I  S R+      D++ +  +++K+
Sbjct: 143 IDVMYRKLTDINDKQFSLNDLCEIYKIPKSDRNSSAE--DAYKIGLLFLKL 191


>gi|262194304|ref|YP_003265513.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077651|gb|ACY13620.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 15/154 (9%)

Query: 7   MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNS-PEALK 61
           M+ +VF D ETTGLD +   I+EI A+ +  + +T    R   + + P   +++ PEAL+
Sbjct: 1   MQPLVFIDCETTGLDPERHEILEIAAIRV--HPQTLDEERELVLRVRPERLEDADPEALE 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LD 119
           ++G       D  S     +E       + A    HN  FD  F+ A    +   P  LD
Sbjct: 59  VNGYRRRVWADAVSLGDAMAELAPML--EGAVLAGHNVAFDRRFLEAAWDYVGHRPENLD 116

Query: 120 PSRIIDTLSIARRKHPSSRND---LNSLCKRYGI 150
               +DT ++A     +   D   L  +C   G+
Sbjct: 117 -HHALDTAALAFPLLMAGEIDSLSLTPVCAHLGV 149


>gi|225686761|ref|YP_002734733.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457]
 gi|256262103|ref|ZP_05464635.1| exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|225642866|gb|ACO02779.1| Exonuclease RNase T and DNA polymerase III [Brucella melitensis
           ATCC 23457]
 gi|263091793|gb|EEZ16124.1| exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|326411169|gb|ADZ68233.1| DNA polymerase III subunit epsilon [Brucella melitensis M28]
 gi|326554460|gb|ADZ89099.1| DNA polymerase III subunit epsilon [Brucella melitensis M5-90]
          Length = 332

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTGL+   + IIEIGAV               TF     P+ +    E  ++ G
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE +K +    +I  +  D    +    IAHNA FD  F+ 
Sbjct: 133 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 171


>gi|24374384|ref|NP_718427.1| exonuclease [Shewanella oneidensis MR-1]
 gi|24348949|gb|AAN55871.1|AE015724_4 exonuclease [Shewanella oneidensis MR-1]
          Length = 181

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 30/190 (15%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            D+E TGLD   D+I+ IG V +      L +++  +  Q+      R +  ++  +HGI
Sbjct: 1   MDLEMTGLDPFKDQILSIGLVPIENGAIPLSHAQ-QKLVQI------RGSVGQSAIIHGI 53

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRII 124
            D  L    S     +  W     +    +AH++  D  F+  ++  I ++  L P+  I
Sbjct: 54  LDNHLTQAVSIEEAMA--WFMEQTRGRVLVAHHSPLDCRFLQQDILTIYHQAVLLPA--I 109

Query: 125 DTLSIAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVY---IKM 174
           DTL + +    R+H   +     L +  +RYG+ I     H AL D+   +++    +  
Sbjct: 110 DTLVLEKQRLLREHSVLKEGSLRLGACRERYGLPI--YGAHSALTDALACAELLLAQVAA 167

Query: 175 MVGGSQINFG 184
           M GG+ I+ G
Sbjct: 168 MGGGADISVG 177


>gi|305667231|ref|YP_003863518.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170]
 gi|88708165|gb|EAR00403.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170]
          Length = 454

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 7/148 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG     + I EI A+   D  +    F   + P  +   P  + L GI ++ L
Sbjct: 4   ILDIETTGGKYNEEGITEI-AIHKFDGHQVVDKFISLVNPE-KDIQPFVVNLTGINNKML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  +     +    +++  +AHNA+FD   +  E +R+  +     + + T+ ++
Sbjct: 62  RTAPKFHEVAKRIVEI--TEDSVLVAHNAQFDYRILRTEFRRLGYNF--ERKTLCTVDLS 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK 157
           +   P + +  L  L +  GI +S R +
Sbjct: 118 KYLLPDAESYSLGKLVRSLGIPMSDRHR 145


>gi|262402358|ref|ZP_06078919.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
 gi|262351140|gb|EEZ00273.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
          Length = 233

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 18/175 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V         +  + +L    R    +++ +HGIT   
Sbjct: 45  VALDFETTGLNAQQDDILSIGLVPFNTQRIALKQARYWLVKPSRPLEEDSVVIHGITHTE 104

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LK       +FSE +D    +    +AH    +  F+     ++ ++ ++   IIDTL I
Sbjct: 105 LKHAQEPEVVFSELFDALRGKIV--VAHFRHIEREFLRQTTLKLWEEAVE-FPIIDTLEI 161

Query: 130 ARRKHPSSRNDLNSLCK-------------RYGITISHRSKHGALLDSHLLSDVY 171
                 + R+    L +             RYG+     S H AL D+   ++++
Sbjct: 162 ELSVQNTQRSLWQRLLRSPIPSVRLGQSRLRYGLPAY--SPHQALTDAIATAELF 214


>gi|163814599|ref|ZP_02205988.1| hypothetical protein COPEUT_00750 [Coprococcus eutactus ATCC
          27759]
 gi|158450234|gb|EDP27229.1| hypothetical protein COPEUT_00750 [Coprococcus eutactus ATCC
          27759]
          Length = 227

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 7  MRKIVFDIETTGLDSKNDR--------IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
          MR +  D E   +DS++ +        IIEIGAV+L D      +F+ ++ P     +  
Sbjct: 9  MRYVFVDFEMNLIDSEHKQEKKICKSEIIEIGAVKLDDEYNEIDSFKSYVKPAYGNMASR 68

Query: 59 ALKLHGITDEFLKDKPSFSSIFSEF 83
           +KL GITDE L+  PS+      F
Sbjct: 69 IIKLTGITDEMLETAPSYEDAVGRF 93


>gi|325955054|ref|YP_004238714.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
 gi|323437672|gb|ADX68136.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
          Length = 453

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 7/148 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIE TG     + II+I A+   D   T   F   + P  RK  P   KL  ITD+ +
Sbjct: 4   ILDIEATGGKVGEESIIDI-AIFRYDGQTTVDQFISLVNPM-RKIDPFVQKLTNITDKMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P F  I     +    ++   + HN KFD   +  E +++  D       IDT   A
Sbjct: 62  LTAPKFHEIAKRIVEI--TEDCILVGHNVKFDYRMLRQEFKKLGYD--YEKDWIDTFEFA 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK 157
           ++  P+  +  L  L    GI I+ R +
Sbjct: 118 QKLIPNMESYSLGKLTNALGIPITDRHR 145


>gi|314976530|gb|EFT20625.1| exonuclease [Propionibacterium acnes HL045PA1]
          Length = 169

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETT LD    RIIEI    ++D +         + P G     EA  +H I+ + 
Sbjct: 17  VILDTETTDLDG---RIIEI---SIIDAATGTVLMNQLINPQGAPIYAEARTVHHISPDD 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           L   P+F+ +     D   ++    +A NA FD G I AE
Sbjct: 71  LATAPTFTQVRPRLEDVVADRVV--MAWNAPFDQGRIEAE 108


>gi|256058832|ref|ZP_05449048.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261322770|ref|ZP_05961967.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33]
 gi|261298750|gb|EEY02247.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33]
          Length = 332

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTGL+   + IIEIGAV               TF     P+ +    E  ++ G
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE +K +    +I  +  D    +    IAHNA FD  F+ 
Sbjct: 133 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 171


>gi|254700203|ref|ZP_05162031.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261750696|ref|ZP_05994405.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5
           str. 513]
 gi|261740449|gb|EEY28375.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5
           str. 513]
          Length = 332

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTGL+   + IIEIGAV               TF     P+ +    E  ++ G
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE +K +    +I  +  D    +    IAHNA FD  F+ 
Sbjct: 133 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 171


>gi|255658850|ref|ZP_05404259.1| putative exonuclease [Mitsuokella multacida DSM 20544]
 gi|260849253|gb|EEX69260.1| putative exonuclease [Mitsuokella multacida DSM 20544]
          Length = 219

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 8/93 (8%)

Query: 7  MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
          M+ +V D+E   +  +        N+ +IEIGAV L +  +    FQ ++ P        
Sbjct: 1  MKHVVVDLEMNPVSREFREVRRKLNEEVIEIGAVRLDENFQQEAEFQCYVKPEYGPIKKH 60

Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
             L GIT   + DK ++++ F +F D+  E+ 
Sbjct: 61 ITSLTGITQAMVADKKTYAACFQDFVDWVGEEE 93


>gi|91070260|gb|ABE11179.1| putative DNA polymerase III, epsilon subunit [uncultured
           Prochlorococcus marinus clone HF10-11H7]
          Length = 259

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 22/201 (10%)

Query: 3   RKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEAL 60
           +  K+ KI + D ETTGLD   D +IEIG + L D S      QV FL P    N+ EA 
Sbjct: 31  KNKKIEKILILDTETTGLDENKDEVIEIGCI-LFDVSFKCVLSQVSFLFP---VNNNEAE 86

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLD 119
            ++GI+ E       +      F    +  +   +AHN +FD   F    L ++NK  + 
Sbjct: 87  YVNGISAEVTNISQPWEDGLHFFLKLVDSSDFI-VAHNVEFDKKWFGKGRLPKLNKKWIC 145

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------ 173
               ++ ++ + +K   +R  +  L   + I + +   H AL D   +S+V+ K      
Sbjct: 146 S---LEDINWSFQKSLKTRPSVTDLALSFSIPVWNL--HRALSDCFYISEVFKKCDNLEE 200

Query: 174 MMVGGSQINFGFK---TNEDR 191
           +++  ++  F +K   + EDR
Sbjct: 201 LLLKATEPRFLYKALVSYEDR 221


>gi|23500730|ref|NP_700170.1| DNA polymerase III subunit epsilon [Brucella suis 1330]
 gi|161621054|ref|YP_001594940.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365]
 gi|254703325|ref|ZP_05165153.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|260567746|ref|ZP_05838215.1| exonuclease [Brucella suis bv. 4 str. 40]
 gi|261753952|ref|ZP_05997661.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
 gi|23464383|gb|AAN34175.1| exonuclease, putative [Brucella suis 1330]
 gi|161337865|gb|ABX64169.1| Exonuclease RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|260154411|gb|EEW89492.1| exonuclease [Brucella suis bv. 4 str. 40]
 gi|261743705|gb|EEY31631.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
          Length = 332

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTGL+   + IIEIGAV               TF     P+ +    E  ++ G
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE +K +    +I  +  D    +    IAHNA FD  F+ 
Sbjct: 133 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 171


>gi|256015766|ref|YP_003105775.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
 gi|255998426|gb|ACU50113.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
          Length = 332

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTGL+   + IIEIGAV               TF     P+ +    E  ++ G
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE +K +    +I  +  D    +    IAHNA FD  F+ 
Sbjct: 133 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 171


>gi|320087113|emb|CBY96881.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 235

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKD 116
           EA ++HGITDE ++D PS+  +  +  +  +     W+A+NAKFD   +  A   R++ D
Sbjct: 108 EATEIHGITDEMVEDAPSWKEMLPQVLELISHG---WVAYNAKFDARMLEQASGSRVDPD 164


>gi|225629458|ref|ZP_03787491.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo]
 gi|225615954|gb|EEH13003.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo]
          Length = 379

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTGL+   + IIEIGAV               TF     P+ +    E  ++ G
Sbjct: 121 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 179

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE +K +    +I  +  D    +    IAHNA FD  F+ 
Sbjct: 180 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 218


>gi|126342108|ref|XP_001377513.1| PREDICTED: similar to 3-5 exonuclease TREX2 [Monodelphis domestica]
          Length = 241

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 40/199 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS------KTNRTFQ---------VFLCPNGRK 54
           +  D+E TGL + +  I EI    +  +S        + T Q         + +CP  + 
Sbjct: 11  VFLDLEATGLPNAHPEIAEISLFAIHRFSLEHPERDESGTLQLPRVLDKLTLCMCPE-QN 69

Query: 55  NSPEALKLHGITDEFLKD--KPSF-SSIFSEFWDFFNEQNAE--WIAHNA-KFDVGFINA 108
            +P+A ++ G++++ L D  K  F  ++    W+F   Q +    +AHN   +D   +  
Sbjct: 70  FTPKASEITGLSNQNLADNHKAGFDGAVIRALWEFLKRQKSPICLVAHNGFDYDFPLLRT 129

Query: 109 ELQRINKDPLDPSRIIDTLSIAR----RKHPSSRN-------DLNSLCKRYGITISHRSK 157
           ELQR+  D    +  +DTL   R      H S+R         L +L +RY      ++ 
Sbjct: 130 ELQRLGADLPGGTVCLDTLPALRGLDKAHHHSTRASHGKKSYSLGNLYRRY-FDDEPQAA 188

Query: 158 HGALLDSHLLSDVYIKMMV 176
           H A        DVY  +MV
Sbjct: 189 HSA------EGDVYALVMV 201


>gi|294853961|ref|ZP_06794633.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
 gi|294819616|gb|EFG36616.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
          Length = 332

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTGL+   + IIEIGAV               TF     P+ +    E  ++ G
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE +K +    +I  +  D    +    IAHNA FD  F+ 
Sbjct: 133 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 171


>gi|257454452|ref|ZP_05619714.1| ribonuclease T [Enhydrobacter aerosaccus SK60]
 gi|257448218|gb|EEV23199.1| ribonuclease T [Enhydrobacter aerosaccus SK60]
          Length = 242

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 89/237 (37%), Gaps = 31/237 (13%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL--------DYSKTNRTFQVFLC 49
           M   N+ R    +V D+ET G + K D ++EI  + +L             N   + F  
Sbjct: 8   MTIANRFRNYLPVVVDVETAGFNPKTDALLEIACIPILMDDTGLFYPGEAVNAHIEPF-- 65

Query: 50  PNGRKNSPEALKLHGITDE-------FLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNA 99
             G      AL+  GI             +K +   IF                 + HNA
Sbjct: 66  -EGANLEARALQFTGINPHSPMRKAIAEDEKTAIRRIFKYLKTVRQSTQCTKCILVGHNA 124

Query: 100 KFDVGFINAELQRI---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
            FD+ F+NA ++R    N+       ++DT++++       +  L   CK  G+      
Sbjct: 125 HFDLSFLNALIERTNSKNQSQFHQFSVLDTVTLSALAF--GQTVLARACKLAGLEFDGNE 182

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE--DRFFKEEKKTVPNISLLKRDKP 211
            H AL D+   ++++  ++     +     ++E  D  + E + +     L+  D P
Sbjct: 183 AHSALYDTQKTAELFCYILNNYPMLTPNLASDEAKDEEYDEPQDSDDEAILVPSDDP 239


>gi|237817379|ref|ZP_04596371.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A]
 gi|237788192|gb|EEP62408.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A]
          Length = 379

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTGL+   + IIEIGAV               TF     P+ +    E  ++ G
Sbjct: 121 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 179

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE +K +    +I  +  D    +    IAHNA FD  F+ 
Sbjct: 180 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 218


>gi|62317837|ref|YP_223690.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str.
           9-941]
 gi|83269816|ref|YP_419107.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar
           Abortus 2308]
 gi|148558112|ref|YP_001257920.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840]
 gi|189023090|ref|YP_001932831.1| DNA polymerase III subunit epsilon [Brucella abortus S19]
 gi|254690675|ref|ZP_05153929.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|254696020|ref|ZP_05157848.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|254699129|ref|ZP_05160957.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254705536|ref|ZP_05167364.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|254710765|ref|ZP_05172576.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|254732573|ref|ZP_05191151.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|256029148|ref|ZP_05442762.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|256043877|ref|ZP_05446797.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111058|ref|ZP_05452120.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str.
           Ether]
 gi|256157340|ref|ZP_05455258.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|256253680|ref|ZP_05459216.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|256255857|ref|ZP_05461393.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260167759|ref|ZP_05754570.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99]
 gi|260545071|ref|ZP_05820892.1| exonuclease [Brucella abortus NCTC 8038]
 gi|260565052|ref|ZP_05835537.1| exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260756251|ref|ZP_05868599.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6
           str. 870]
 gi|260760381|ref|ZP_05872729.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4
           str. 292]
 gi|260763621|ref|ZP_05875953.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882073|ref|ZP_05893687.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9
           str. C68]
 gi|261216447|ref|ZP_05930728.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3
           str. Tulya]
 gi|261220817|ref|ZP_05935098.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94]
 gi|261312940|ref|ZP_05952137.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M163/99/10]
 gi|261318335|ref|ZP_05957532.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           B2/94]
 gi|261757195|ref|ZP_06000904.1| exonuclease [Brucella sp. F5/99]
 gi|265986133|ref|ZP_06098690.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M292/94/1]
 gi|265990297|ref|ZP_06102854.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           1 str. Rev.1]
 gi|265992595|ref|ZP_06105152.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           3 str. Ether]
 gi|265995827|ref|ZP_06108384.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M490/95/1]
 gi|297249226|ref|ZP_06932927.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|62198030|gb|AAX76329.1| hypothetical exonuclease [Brucella abortus bv. 1 str. 9-941]
 gi|82940090|emb|CAJ13133.1| Exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148369397|gb|ABQ62269.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189021664|gb|ACD74385.1| Exonuclease [Brucella abortus S19]
 gi|260098342|gb|EEW82216.1| exonuclease [Brucella abortus NCTC 8038]
 gi|260152695|gb|EEW87788.1| exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260670699|gb|EEX57639.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4
           str. 292]
 gi|260674042|gb|EEX60863.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260676359|gb|EEX63180.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6
           str. 870]
 gi|260871601|gb|EEX78670.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9
           str. C68]
 gi|260918054|gb|EEX84915.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3
           str. Tulya]
 gi|260919401|gb|EEX86054.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94]
 gi|261297558|gb|EEY01055.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           B2/94]
 gi|261301966|gb|EEY05463.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M163/99/10]
 gi|261737179|gb|EEY25175.1| exonuclease [Brucella sp. F5/99]
 gi|262550124|gb|EEZ06285.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M490/95/1]
 gi|262763465|gb|EEZ09497.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           3 str. Ether]
 gi|263000966|gb|EEZ13656.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           1 str. Rev.1]
 gi|264658330|gb|EEZ28591.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M292/94/1]
 gi|297173095|gb|EFH32459.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
          Length = 332

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTGL+   + IIEIGAV               TF     P+ +    E  ++ G
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE +K +    +I  +  D    +    IAHNA FD  F+ 
Sbjct: 133 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 171


>gi|88856168|ref|ZP_01130828.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
 gi|88814487|gb|EAR24349.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
          Length = 232

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 8/156 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D +  RI+    + L+D S    +   +L   G +    A  +HGI+ E  +
Sbjct: 10  FDLETTGVDVETSRIVS-ACIALVDASGVVISRWDWLADPGVEIPEGAAAIHGISTERAR 68

Query: 72  DKPSFSSI-FSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDT 126
            +   ++I  +E         A     + +NA +D+  ++ E +R + D L +P  +ID 
Sbjct: 69  AEGRDAAIVVAEIVQTLKVTCALGIPLVVYNAPYDLSLLDRECRRYSIDGLREPYIVIDP 128

Query: 127 LSI--ARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
           L I  A  ++   +  L      YG+ +      G+
Sbjct: 129 LVIDKAVDRYRRGKRTLEVTSGLYGVALDDAHDAGS 164


>gi|114047088|ref|YP_737638.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7]
 gi|113888530|gb|ABI42581.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7]
          Length = 228

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+E TGLD  ND+I+ IG V + + +    + Q  L    + +  ++  +HGI D  
Sbjct: 43  MAMDLEMTGLDPLNDQILSIGLVPIENGTIPLGSAQQKLV-QIQGSVGQSATIHGILDNH 101

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLS 128
           L +  S     +  W     +    +AH++  D  F+  ++  I ++  + P+  IDTL 
Sbjct: 102 LTEAVSIEEAMA--WFVSQTRGHILVAHHSPLDCRFLQQDILSIYHQVVVIPA--IDTLL 157

Query: 129 IAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGS 179
           + +    R+H   +     L +  +RYG+ I     H AL D+    ++ +  +  +GG+
Sbjct: 158 LEKHRLLREHSVLKEGSLRLGACRERYGLPI--YGAHSALTDALACGELLLAQVASMGGA 215

Query: 180 Q 180
           +
Sbjct: 216 E 216


>gi|284040773|ref|YP_003390703.1| exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
           74]
 gi|283820066|gb|ADB41904.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
           74]
          Length = 270

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 12/129 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           FD+ETTG++   DRII+I  ++ L      +K  R         G     E+  +HGI D
Sbjct: 14  FDLETTGINIAKDRIIDICIIKALPGGEVITKNQRVHP------GMPIPLESSLIHGIYD 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126
           + ++D P F ++      F +  +      N +FDV  +  E  R N D  +   R++D 
Sbjct: 68  DDVQDAPPFKTVARTLAQFLDGCDLAGFNCN-RFDVPLLVEEFLRANVDFDMKNRRLVDA 126

Query: 127 LSIARRKHP 135
             I     P
Sbjct: 127 QRIFHLMEP 135


>gi|42568689|ref|NP_200947.3| exonuclease family protein [Arabidopsis thaliana]
 gi|111074224|gb|ABH04485.1| At5g61390 [Arabidopsis thaliana]
 gi|332010078|gb|AED97461.1| exonuclease-like protein [Arabidopsis thaliana]
          Length = 487

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 22/159 (13%)

Query: 12  FDIETTGL--DSKNDRIIEIGA--------VELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           FD+ETT      +   I+E G+        VEL +YS   R   + L       +P ++K
Sbjct: 19  FDVETTIPFRVGQGYAILEFGSILVCPKKLVELKNYSVLVRPANLNLI------TPRSVK 72

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP 120
            +GI  E ++   +F+ I    +D  + +   W  HN  KFD   I      I +DP +P
Sbjct: 73  CNGIKREDVESALTFADIADTVYDILHGRI--WAGHNILKFDCPRIREAFAEIGRDPPEP 130

Query: 121 SRIIDTLSIARRKHPSSRNDLN--SLCKRYGI-TISHRS 156
              ID+L++  ++      D+   +L   +G+   +HRS
Sbjct: 131 KGTIDSLALLTQRFGRRAGDMKMATLATYFGLGNQTHRS 169


>gi|86148888|ref|ZP_01067137.1| ribonuclease T [Vibrio sp. MED222]
 gi|85833322|gb|EAQ51531.1| ribonuclease T [Vibrio sp. MED222]
          Length = 119

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 95  IAHNAKFDVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
           +AHNA FD+ F+NA  +R  + + P  P    DT +++   +   +  L   C+  G+  
Sbjct: 24  VAHNATFDLNFVNAASERCKLKRVPFHPFATFDTAALSGLAY--GQTVLAKACRTAGMEF 81

Query: 153 SHRSKHGALLDSHLLSDVYIKMM 175
            ++  H AL D+   ++++  ++
Sbjct: 82  DNKEAHSALYDTQKTTELFCGIV 104


>gi|330995701|ref|ZP_08319599.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
 gi|329574760|gb|EGG56321.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
          Length = 256

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 20/173 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64
           + FD+ETTG++  NDRI+E+  +++     + SK+ R        N   + PE +  +HG
Sbjct: 10  VFFDLETTGINITNDRIVELCYIKVYPNGNEESKSMRI-------NPEMHIPESSSAIHG 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSR 122
           I DE + D P+F  +  +  +    +  ++   N+ +FDV  +  E  R   D  +   +
Sbjct: 63  IYDEDVADCPTFKQVAKDLANTI--KGCDFAGFNSNRFDVPMLVEEFLRAGIDIDIRKRK 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ID  +I    H   R  L++  K Y       + H AL D+    +V +  +
Sbjct: 121 FIDVQNIY---HKLERRTLSAAYKFY-CGKDLENAHSALADTRATYEVLMAQL 169


>gi|326335188|ref|ZP_08201385.1| exonuclease [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692718|gb|EGD34660.1| exonuclease [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 273

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 10/116 (8%)

Query: 5   NKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA-LK 61
           N  R I F D+ETTG D   DRI+EI  +++  + S+ ++T+ V    N     P A   
Sbjct: 20  NLTRPICFFDLETTGTDVSKDRIVEISILKVFPNGSRESKTWLV----NPTIPIPAASTD 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           +HGI+D+ +   P+F  +  +  +    ++++   +N+ +FD+  +  EL R   D
Sbjct: 76  IHGISDKMVAQAPTFKELAKQIHNLI--KDSDLAGYNSDRFDIPLLAEELLRAGVD 129


>gi|311111764|ref|YP_003982986.1| DNA polymerase III subunit epsilon [Rothia dentocariosa ATCC 17931]
 gi|310943258|gb|ADP39552.1| DNA polymerase III subunit epsilon [Rothia dentocariosa ATCC 17931]
          Length = 230

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 21/174 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  FD+ETTG+D    RI+   ++ LL+   + +    +L   G +    A  +HGIT E
Sbjct: 8   RATFDLETTGVDVTTARIV-TASLLLLNPDGSVQRAGEWLANPGIEIPEGAASVHGITTE 66

Query: 69  FLKD--KPS-------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDP 117
           + +   +P+         +I S F D         IA NA +D   ++ E+ R N     
Sbjct: 67  YARSHGQPAQQVIWEVAGAIGSLFLDGIPV-----IAFNAAYDFSVLHHEMLRYNIAHGE 121

Query: 118 LDPSRIIDTLSIARRKHPSSRND--LNSLCKRYGITI--SHRSKHGALLDSHLL 167
           L    I+D   I +   P  R +  L +L   + + +  +H SK  AL    LL
Sbjct: 122 LPAGHILDPYVIHKHVIPRKRGNRKLETLTAEHDVVLENAHTSKADALAAERLL 175


>gi|256377108|ref|YP_003100768.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
 gi|255921411|gb|ACU36922.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
          Length = 372

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 13/169 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D E T       R+IEI  V     +         + P G + +P A + HGIT +
Sbjct: 93  AVVLDTELTDF---TGRVIEIAVVA----TDGATLLTSLVDPEGAQINPYAQRAHGITAQ 145

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P+   ++ +       +    IA NA FD+  + AE + +  D   P  +     
Sbjct: 146 MLTGAPTLEQLWPKLDHVLRGKRV--IAWNAPFDLTRLRAEHRHLFGDADLPDWLTGPWL 203

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMV 176
            A RKH +   D N+   + G   +HR + G   +   L+ + +IK M 
Sbjct: 204 CAMRKHAAWVGDRNT---KGGGFRNHRLEGGHRAEGDCLAALAWIKRMA 249


>gi|329116348|ref|ZP_08245065.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           parauberis NCFD 2020]
 gi|326906753|gb|EGE53667.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           parauberis NCFD 2020]
          Length = 834

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 10/165 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M ++   +  V D+E T   +   +II++G V +++  K   T+Q  + P+   +    L
Sbjct: 15  MTKEKNPKYAVIDLEATSAGTAA-KIIQVGIV-IVEGGKITNTYQTDVNPHEDLSDHIKL 72

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GI+D+ L   P FS I    +D    ++  ++AHN KFD   + AE        L  
Sbjct: 73  -LTGISDQQLASAPEFSQIAGTIFDLI--KDCIFVAHNVKFDANLL-AEALFFEGFELRT 128

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
            R +DT+ +A+   P   + +L  L     + +S    H A+ D+
Sbjct: 129 PR-VDTVELAQVFFPHLEKYNLTYLSTELNLELS--DAHTAIADA 170


>gi|293190188|ref|ZP_06608684.1| putative DNA polymerase III epsilon subunit [Actinomyces
           odontolyticus F0309]
 gi|292821004|gb|EFF79957.1| putative DNA polymerase III epsilon subunit [Actinomyces
           odontolyticus F0309]
          Length = 250

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 19/182 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQV--FLCPNGRKNSPEALKLHGI 65
           FD ETTG+ +  DR++    V  +D     S  +   QV  +L   G +   +A  +HGI
Sbjct: 11  FDTETTGVRALKDRLVTAALVLRIDGASYRSGVSAPDQVATWLTDPGVEIPEQATAVHGI 70

Query: 66  TDEFL-KDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLD-- 119
           T E   +D      +  E      E   +    +A NA +D+  +N EL+R      +  
Sbjct: 71  TTEQARRDGRPIEEVLHELAGSIVEHWLRGYPVVAFNATYDITLVNQELRRHRLGSFEER 130

Query: 120 ----PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               P  I+D L + R+  +    +  L  +   YG  ++    H A +D  +  DV   
Sbjct: 131 LEGAPMLIVDPLVLDRKLDRFRKGKKTLTEMAPVYG-AVASPDAHTAEVDVAMTLDVLAG 189

Query: 174 MM 175
           M+
Sbjct: 190 MV 191


>gi|87118535|ref|ZP_01074434.1| exonuclease [Marinomonas sp. MED121]
 gi|86166169|gb|EAQ67435.1| exonuclease [Marinomonas sp. MED121]
          Length = 230

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 19/187 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGLD+  DR+I +G V + + +    + +  L  NG  +  + + +H ITD+ 
Sbjct: 39  LVLDMETTGLDATKDRVISLGWVLIKNGAIKLSSARHILLDNGPVDE-KTVAIHMITDQD 97

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + +     S+   +           + H+A  +  F+    Q    +PL    ++DTL++
Sbjct: 98  ISELGRNPSVAMRYLRQLLLDKV-LVVHHAPIEQAFLEKLWQAHKLNPL-TQVMLDTLAM 155

Query: 130 AR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            R    RK     +D   L    KRYG  +     H AL D+   +++ +      +Q+N
Sbjct: 156 ERDTQMRKQYMLTSDAFRLGECRKRYG--LPDYQGHDALGDAQATAELLL------AQLN 207

Query: 183 F-GFKTN 188
             G  TN
Sbjct: 208 HAGLDTN 214


>gi|326496743|dbj|BAJ98398.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 485

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 8/114 (7%)

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRIN 114
           S  +++ +GIT + +   P F  +  + +D  + +   W  HN  +FDV  I      I 
Sbjct: 77  SAASMRCNGITRDAVAAAPCFRDVADKAYDLLHGR--VWAGHNIVRFDVPRIREAFIEIG 134

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLN--SLCKRYGITISHRSKHGALLDSHL 166
           + P +P  +IDTL +  ++      D+   SL   +G+    R KH +L D  +
Sbjct: 135 RPPPEPKGMIDTLPLLTQRFGRRAGDMKMASLANYFGL---GRQKHRSLDDVRM 185


>gi|148980340|ref|ZP_01816006.1| DNA polymerase III, epsilon subunit [Vibrionales bacterium SWAT-3]
 gi|145961282|gb|EDK26593.1| DNA polymerase III, epsilon subunit [Vibrionales bacterium SWAT-3]
          Length = 238

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 20/166 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           IV D+ETTGLDS+ D I+ +G V++    +D +       ++L  + + N+  A+  H I
Sbjct: 52  IVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAK---HIYLNNDSQINAETAVINH-I 107

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRII 124
           T + L++    +SI      FF     + I AH    +  FI+  L R       P   +
Sbjct: 108 TPQMLEEG---ASIHDAMLTFFEAAKGKIIVAHACVVEEKFISQYLLRCYGLRQLPLLWL 164

Query: 125 DTLSIARRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDS 164
           DTL I +    +  N       L    +RYG  +   + H AL D+
Sbjct: 165 DTLCIEKSMEKAISNHEEVDLTLAGTRERYG--LPEYNSHNALADA 208


>gi|121582521|ref|YP_974053.1| exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42]
 gi|120608579|gb|ABM44318.1| Exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42]
          Length = 302

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 8   RKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D ETTGL     D ++E+  V+       N      + P+     PEA  +HGIT
Sbjct: 131 RTVYMDTETTGLYGGCGDELLELALVD----DAGNVLLDSLVKPDRHTEWPEAQAIHGIT 186

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
              + + PS  S+         E     + +NA FD+ F+
Sbjct: 187 PADVMNAPSLESLLPRLLAVI-EDAGTLVIYNAGFDLAFL 225


>gi|23098512|ref|NP_691978.1| hypothetical protein OB1057 [Oceanobacillus iheyensis HTE831]
 gi|22776738|dbj|BAC13013.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 195

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 7/116 (6%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT+E +++ P+F+ ++     +   ++   IAHNA FD+  +   L + +  P    
Sbjct: 53  IHGITEEQVQEAPTFAELWPTLSAYL--EDTILIAHNASFDMSVLRQSLNKYDI-PCPNY 109

Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             + T+ I+R   P   N  L+++   +GI ++H   H A+ D+   + +++  + 
Sbjct: 110 TSLCTVKISRLIWPQLENHKLHTVANHHGIALNH---HHAMDDARASAKIFLASLA 162


>gi|71276282|ref|ZP_00652560.1| Ribonuclease T [Xylella fastidiosa Dixon]
 gi|71898489|ref|ZP_00680661.1| Ribonuclease T [Xylella fastidiosa Ann-1]
 gi|182681822|ref|YP_001829982.1| ribonuclease T [Xylella fastidiosa M23]
 gi|71162890|gb|EAO12614.1| Ribonuclease T [Xylella fastidiosa Dixon]
 gi|71731802|gb|EAO33861.1| Ribonuclease T [Xylella fastidiosa Ann-1]
 gi|182631932|gb|ACB92708.1| ribonuclease T [Xylella fastidiosa M23]
          Length = 210

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 27/192 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-------QVFLCPNGRKNSPEALKL 62
           +V D+ET G +  +  ++EI  + + +   T R +        V   P G    P++L++
Sbjct: 23  VVVDVETGGFNWNHHALLEIACIPI-EMDDTGRLYPGEVTSTHVIPAP-GTDIDPKSLEV 80

Query: 63  HGITDE----FLKD-KPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRI- 113
            GI  +    F K+ K +   IF+        +  Q A  + HNA FD+ F+NA + R  
Sbjct: 81  TGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTA 140

Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD----SHLLS 168
             ++P     + DT+++A   +   +  L    +  G+  +    H A+ D    +HL  
Sbjct: 141 YKRNPFHQFSVFDTVTLAGMAY--GQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFC 198

Query: 169 DV--YIKMMVGG 178
            +     +MV G
Sbjct: 199 TITNIWPLMVAG 210


>gi|303235494|ref|ZP_07322106.1| exonuclease [Prevotella disiens FB035-09AN]
 gi|302484293|gb|EFL47276.1| exonuclease [Prevotella disiens FB035-09AN]
          Length = 183

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 7/160 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ET    +    I E G + ++   K   T    + P G   +    ++HGIT + 
Sbjct: 7   IAIDFETA--SNAQAAICEAG-ISIVKGGKVVETRSWLVRPEGNAYNYWNTRVHGITAKD 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
               P F  +++E   +  +     +AHNA FD+G I   L        + +    +L  
Sbjct: 64  TAHAPEFPQVWNEIMTYLADCPIL-VAHNAGFDMGCIRRSLAFYGLKTPEITYYC-SLRA 121

Query: 130 ARRKHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHLL 167
           AR+ +    N L  LC+++ I     HR+   A + +HL 
Sbjct: 122 ARKIYDFECNKLEFLCQKFEIPYGQHHRAGDDAAMCAHLF 161


>gi|160689452|gb|ABX45584.1| polymerase C [Bacillus atrophaeus]
          Length = 259

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160
           D+GF+N   +R+ K     + +IDTL + R  +P  +N  LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKRLLKVEKAQNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+     + +KM+   ++  I +  + NE+
Sbjct: 59  IYDAEATGYLLLKMLKDAAEKDIQYHDQLNEN 90


>gi|284042646|ref|YP_003392986.1| exonuclease RNase T and DNA polymerase III [Conexibacter woesei DSM
           14684]
 gi|283946867|gb|ADB49611.1| Exonuclease RNase T and DNA polymerase III [Conexibacter woesei DSM
           14684]
          Length = 259

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 16/160 (10%)

Query: 7   MRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++  FDIETTG+D ++DRI+   AV L   ++        + P G +    A  +HGI
Sbjct: 1   MRRLAAFDIETTGIDPQSDRIV-TAAVSLAGDARPTVDHDWLVDP-GVEIPAGATAVHGI 58

Query: 66  TDEFLKDKPSFSS-IFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPL--- 118
           T +  + +   S+    E       Q   +   IA NA+FD+  ++ E +R    PL   
Sbjct: 59  TTDHARAEGRASAEAVEEITAVLAAQLLDHVPVIAFNARFDLTCLDREARRHGVVPLVDR 118

Query: 119 ----DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
               D   ++D   + ++  ++   +  L ++C+ Y + +
Sbjct: 119 VGGPDGLIVVDPFVLDKQFDRYRRGKRTLGAVCEHYRVRL 158


>gi|9757860|dbj|BAB08494.1| exonuclease-like protein [Arabidopsis thaliana]
          Length = 500

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 22/159 (13%)

Query: 12  FDIETTGL--DSKNDRIIEIGA--------VELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           FD+ETT      +   I+E G+        VEL +YS   R   + L       +P ++K
Sbjct: 16  FDVETTIPFRVGQGYAILEFGSILVCPKKLVELKNYSVLVRPANLNLI------TPRSVK 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP 120
            +GI  E ++   +F+ I    +D  + +   W  HN  KFD   I      I +DP +P
Sbjct: 70  CNGIKREDVESALTFADIADTVYDILHGRI--WAGHNILKFDCPRIREAFAEIGRDPPEP 127

Query: 121 SRIIDTLSIARRKHPSSRNDLN--SLCKRYGI-TISHRS 156
              ID+L++  ++      D+   +L   +G+   +HRS
Sbjct: 128 KGTIDSLALLTQRFGRRAGDMKMATLATYFGLGNQTHRS 166


>gi|241666520|ref|YP_002984604.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240861977|gb|ACS59642.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 326

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 16/107 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+ ++D IIEIGAV     D         ++  L    R   PE  +L GI
Sbjct: 75  VILDTETTGLNHRSDEIIEIGAVAFTFNDDGAIGDIVGIYGGLQQPSRPIPPEITRLTGI 134

Query: 66  TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           TD  ++    D  S  ++  E  D         IAHNA FD  F  A
Sbjct: 135 TDAMVEGQLIDIQSLRTLI-EPADLI-------IAHNAGFDRPFCEA 173


>gi|312891424|ref|ZP_07750941.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter
           paludis DSM 18603]
 gi|311296118|gb|EFQ73270.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter
           paludis DSM 18603]
          Length = 380

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 5/103 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD+ETTG +   DRI+EI  ++L  D +   +T+++   P     S E+  +HGI +E L
Sbjct: 32  FDLETTGTNIGVDRIVEISVIKLNPDGTDDVKTWKI--NPE-MPISIESSMIHGIYEEHL 88

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
            D P F +  +E  DF  + +      N +FD+  +  E  R+
Sbjct: 89  IDAPVFKTAAAEISDFIADSDLAGYNSN-RFDIPMLMEEFLRV 130


>gi|307578072|gb|ADN62041.1| ribonuclease T [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 198

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 27/192 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-------QVFLCPNGRKNSPEALKL 62
           +V D+ET G +  +  ++EI  + + +   T R +        V   P G    P++L++
Sbjct: 11  VVVDVETGGFNWNHHALLEIACIPI-EMDDTGRLYPGEVTSTHVIPAP-GTDIDPKSLEV 68

Query: 63  HGITDE----FLKD-KPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRI- 113
            GI  +    F K+ K +   IF+        +  Q A  + HNA FD+ F+NA + R  
Sbjct: 69  TGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTA 128

Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD----SHLLS 168
             ++P     + DT+++A   +   +  L    +  G+  +    H A+ D    +HL  
Sbjct: 129 YKRNPFHQFSVFDTVTLAGMAY--GQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFC 186

Query: 169 DV--YIKMMVGG 178
            +     +MV G
Sbjct: 187 TITNIWPLMVAG 198


>gi|28199095|ref|NP_779409.1| ribonuclease T [Xylella fastidiosa Temecula1]
 gi|32129969|sp|Q87C86|RNT_XYLFT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|28057193|gb|AAO29058.1| ribonuclease T [Xylella fastidiosa Temecula1]
          Length = 211

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 27/192 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-------QVFLCPNGRKNSPEALKL 62
           +V D+ET G +  +  ++EI  + + +   T R +        V   P G    P++L++
Sbjct: 24  VVVDVETGGFNWNHHALLEIACIPI-EMDDTGRLYPGEVTSTHVIPAP-GTDIDPKSLEV 81

Query: 63  HGITDE----FLKD-KPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRI- 113
            GI  +    F K+ K +   IF+        +  Q A  + HNA FD+ F+NA + R  
Sbjct: 82  TGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTA 141

Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD----SHLLS 168
             ++P     + DT+++A   +   +  L    +  G+  +    H A+ D    +HL  
Sbjct: 142 YKRNPFHQFSVFDTVTLAGMAY--GQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFC 199

Query: 169 DV--YIKMMVGG 178
            +     +MV G
Sbjct: 200 TITNIWPLMVAG 211


>gi|170730478|ref|YP_001775911.1| ribonuclease T [Xylella fastidiosa M12]
 gi|167965271|gb|ACA12281.1| ribonuclease T [Xylella fastidiosa M12]
          Length = 210

 Score = 43.9 bits (102), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 27/192 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-------QVFLCPNGRKNSPEALKL 62
           +V D+ET G +  +  ++EI  + + +   T R +        V   P G    P++L++
Sbjct: 23  VVVDVETGGFNWNHHALLEIACIPI-EMDDTGRLYPGEVTSTHVIPAP-GTDIDPKSLEV 80

Query: 63  HGITDE----FLKD-KPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRI- 113
            GI  +    F K+ K +   IF+        +  Q A  + HNA FD+ F+NA + R  
Sbjct: 81  TGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTA 140

Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD----SHLLS 168
             ++P     + DT+++A   +   +  L    +  G+  +    H A+ D    +HL  
Sbjct: 141 YKRNPFHQFSVFDTVTLAGMAY--GQTVLARAVQAAGLDWNATDAHSAVYDAEKTAHLFC 198

Query: 169 DV--YIKMMVGG 178
            +     +MV G
Sbjct: 199 TITNIWPLMVAG 210


>gi|153006866|ref|YP_001381191.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030439|gb|ABS28207.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
          Length = 238

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 18/176 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGI-TD 67
           V D E TGLD   D I+ IGAV + +       R +QVF  P    +  E + +HG+  D
Sbjct: 49  VLDCEMTGLDPARDEILSIGAVRIRNGRIVMAERFYQVF-KPTEAVSPKEVILIHGLGPD 107

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPSRI 123
           E  +  P           F  +     I H    D+ F+NA L    +R  K+P   +R+
Sbjct: 108 EVSRGLP-LGDALERLLAFIGDSVV--IGHFTSVDLSFLNAALASRKERSLKNPALDTRL 164

Query: 124 IDTLSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +      RR  P+ +     +L  +    G  +     H A  D+     V++K++
Sbjct: 165 LYAW-WRRRTSPAGQAAADANLEDIVIEMG--LPRYPAHHAFYDALTTGMVFLKLL 217


>gi|242035185|ref|XP_002464987.1| hypothetical protein SORBIDRAFT_01g029940 [Sorghum bicolor]
 gi|241918841|gb|EER91985.1| hypothetical protein SORBIDRAFT_01g029940 [Sorghum bicolor]
          Length = 435

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 17/170 (10%)

Query: 9   KIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC----PNGRKNSPEALKLH 63
           +IVF D+ET+   +    ++E GAV +      + +    L     P+     P A +  
Sbjct: 19  EIVFLDVETS---TPPRVLLEFGAVVVCSRRLVDVSSYATLVRPADPDAAVPDPTA-RCS 74

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSR 122
           GIT + + D P F  +  + +D  + +   W  HN  KFD   I      I + P +P  
Sbjct: 75  GITRDAVADAPPFRDVADKVYDVLHGR--VWAGHNIVKFDSVIIRDAFAEIGRPPPEPKG 132

Query: 123 IIDTLSIARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++DTL +  +       D  L SL   +G+    + +H +L D  +  DV
Sbjct: 133 MVDTLPLLTQWFGPRAGDMKLASLANYFGL---GKQRHRSLDDVKMNIDV 179


>gi|218457859|ref|YP_002418864.1| putative DEDDH exonuclease [Pseudomonas phage SN]
 gi|218379127|emb|CAT99715.1| putative DEDDH exonuclease [Pseudomonas phage SN]
          Length = 184

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 77/177 (43%), Gaps = 18/177 (10%)

Query: 11  VFDIETTGLD-------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           V+D ETTGL         K  RIIE   V + D  K     + F+C  G        K+ 
Sbjct: 5   VWDTETTGLPFHQRVSLRKQPRIIEFAGV-ITDGEKILDEVE-FICNPGIVIEEIITKIT 62

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---- 119
           G+ +E L   PSF     +  DFF+  +A  IAHN  FD   +  +L R  K  L+    
Sbjct: 63  GLKNEDLVKHPSFLDQRHKVRDFFSRADAN-IAHNLPFDKFMLTCDLAR-GKLGLEEVNF 120

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           PS  I T+  + R     R  L  L + Y     +  KH AL D  LL +V  +M V
Sbjct: 121 PSLDICTVEESARLF-GHRMRLQHLYEHY--CGPYVQKHRALDDVRLLHEVCKRMGV 174


>gi|332291046|ref|YP_004429655.1| Exonuclease RNase T and DNA polymerase III [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169132|gb|AEE18387.1| Exonuclease RNase T and DNA polymerase III [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 257

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 27/113 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-----------PEA- 59
           FD+ETTG++   DRI+EI  +++               P+GR+             P A 
Sbjct: 12  FDLETTGINVAKDRIVEISILKVF--------------PDGREEEFTERINPTVPIPAAT 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             +HGI+D  + DKP+F++   + +D   + +      N +FD+  +  EL R
Sbjct: 58  TAVHGISDADVVDKPTFAARAKDVYDIIKDADLAGFNSN-RFDIPLLVEELLR 109


>gi|307720332|ref|YP_003891472.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978425|gb|ADN08460.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
          Length = 247

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 13/128 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTG + + DR+I++G + L   +K       F C         A+++HGIT + 
Sbjct: 6   VILDTETTGTNEE-DRVIQLGYMVL--GAKEIEVHNEF-CSTDVAIKFGAMEVHGITPDL 61

Query: 70  LKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           L+ KP    +  +    +    +N   I HNA FD+  +  E  +         ++IDTL
Sbjct: 62  LEGKPPCVETVAYKRLLELNTSENY-LIIHNAPFDITMLEKEGFKTQ------MKVIDTL 114

Query: 128 SIARRKHP 135
            +A+   P
Sbjct: 115 RVAKHVMP 122


>gi|77360378|ref|YP_339953.1| DNA polymerase III subunit epsilon [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875289|emb|CAI86510.1| putative DNA polymerase III, epsilon subunit [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 236

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 13/128 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65
           +  D ETTGLDS+ D I+ +G V       Y K +R + V      R+N   E++ +HGI
Sbjct: 48  VAMDFETTGLDSEADDIVSVGLVPFNLQRIYCKHSRHWVV----QPRRNLHEESIIIHGI 103

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRII 124
           T   + D P F+ I        + +    + H A  +  F+ NA L R+++       ++
Sbjct: 104 THSEVDDAPDFNRIIEPLLAALSGKVV--VVHYAAIERPFLNNALLLRLHEGI--EFALV 159

Query: 125 DTLSIARR 132
           DT+ I +R
Sbjct: 160 DTMDIEKR 167


>gi|328473671|gb|EGF44506.1| hypothetical protein VP10329_13450 [Vibrio parahaemolyticus 10329]
          Length = 254

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M + +    I+ D ETTGL S+ + I+E  A+     + T +     L         EA 
Sbjct: 48  MKKLSTQNAIILDTETTGLGSQAE-IVEFTAI----CAHTGKVIVNELVKPTCSIPAEAT 102

Query: 61  KLHGITDEFLKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            +HGITDE +KD P F  +FS  F    N +    I +N+ FD   I   L +
Sbjct: 103 AIHGITDEDVKDAPDFHLVFSNHFLPLLNGR--PIIIYNSDFDTRLIIQSLDK 153


>gi|260768304|ref|ZP_05877238.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260616334|gb|EEX41519.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
          Length = 193

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 5/124 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M  +  D ETTGL    D II IG V   L+    NR     + P  +K    ++ +HGI
Sbjct: 1   MEFVAMDFETTGLSVDKDEIITIGLVPFTLERIYLNRAKHWTVRPR-QKLDEHSIVIHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   + D P  S IF E  +    +    + H  + +  F++  L+R   + ++   +ID
Sbjct: 60  THNDIMDAPDLSDIFEEVLEHLAGRVL--VVHYHRIEREFLDRALKRRIGEGIEFP-VID 116

Query: 126 TLSI 129
           T+ I
Sbjct: 117 TMEI 120


>gi|302873810|ref|YP_003842443.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|307689948|ref|ZP_07632394.1| DNA polymerase III subunit epsilon [Clostridium cellulovorans 743B]
 gi|302576667|gb|ADL50679.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
          Length = 306

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 14/171 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K +    IG V + +     R   + + P   +  P  + +HGI 
Sbjct: 1   MNFIAIDFETA--NEKRNSPCSIGIVVVKNGEVVERIHHL-IKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124
              ++++P F  ++++    FNE  +  IAHNA FD+  +  +AEL  I    L   + I
Sbjct: 58  PAMVENEPEFHEVWAKIKHHFNE--SLVIAHNASFDISVLRKSAELYDIE---LPSFKYI 112

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            T+ +A+  +    N  LN++    G    H   H AL D+   S++ + +
Sbjct: 113 CTMRLAKNFYRGIENAKLNTVNDFLGYEFKH---HDALYDALACSNILLNI 160


>gi|153003684|ref|YP_001378009.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027257|gb|ABS25025.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
          Length = 200

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 80/175 (45%), Gaps = 15/175 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHGITDEF 69
            D+ET GLD K+D I+ +G V +   + +   ++   + P+ R+   P++++ H +    
Sbjct: 16  LDLETGGLDPKSDPILAVGMVPIRGGAIRLAESYASLVRPDVREGIRPDSMRAHHLVPRD 75

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P   ++  +  D    + A  + HNA  DV F+    +R  +    P  ++DT+ +
Sbjct: 76  VAEAPPLETVLDQI-DARIREGA-LLVHNAALDVSFLRRAYRRAGRRWPGPP-VVDTVVL 132

Query: 130 -------ARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  AR   P +     +LN    R    +   + H AL D+   +++++ +
Sbjct: 133 LLKAAKRARFVDPDATGIEPELNLAAARRRAKLPEYASHDALTDAIAAAELFLVL 187


>gi|270158349|ref|ZP_06187006.1| ribonuclease T [Legionella longbeachae D-4968]
 gi|289163409|ref|YP_003453547.1| ribonuclease T [Legionella longbeachae NSW150]
 gi|269990374|gb|EEZ96628.1| ribonuclease T [Legionella longbeachae D-4968]
 gi|288856582|emb|CBJ10387.1| ribonuclease T [Legionella longbeachae NSW150]
          Length = 205

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 21/189 (11%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKN 55
           KN+ R    +V D+ET G++ + + ++E+  V +L      + +    F+  L  +G + 
Sbjct: 12  KNRFRGFLPVVVDVETAGVNPQKNALLEMCIVLILMDDQGKFYRGKSYFEHILPFSGSEL 71

Query: 56  SPEALKLHGITDEF------LKDKPSFSSIFSEFW---DFFNEQNAEWIAHNAKFDVGFI 106
            P++L+ + I D F      + +K +  ++F   +     F  Q A  + HNA FD+ FI
Sbjct: 72  DPKSLEFNQI-DPFQPLRFAIDEKTALENLFHPIFAALKIFQCQRAVLVGHNAWFDLLFI 130

Query: 107 NAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
              ++R   K P       DT ++    +   +  L    +  GI    +  H A+ D+ 
Sbjct: 131 KEAIKRTGVKSPFHAFTCFDTATLGGFIY--GQTVLAKAAQAAGIAFDAQEAHSAIYDAE 188

Query: 166 LLSDVYIKM 174
             +D++  M
Sbjct: 189 KTADLFCHM 197


>gi|254712763|ref|ZP_05174574.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|254715832|ref|ZP_05177643.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261217593|ref|ZP_05931874.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1]
 gi|261320470|ref|ZP_05959667.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M644/93/1]
 gi|260922682|gb|EEX89250.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1]
 gi|261293160|gb|EEX96656.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M644/93/1]
          Length = 329

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 13/103 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTGL+   + IIEIGAV               TF     P    + P   ++ G
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQP----SKPIPAEITG 129

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE +K +    +I  +  D    +    IAHNA FD  F+ 
Sbjct: 130 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 168


>gi|317407747|gb|EFV87675.1| exonuclease [Achromobacter xylosoxidans C54]
          Length = 183

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 12/157 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITD- 67
           +V D+ETTGL + +  I+E  AV +       R +   +    R   P  + +L GIT+ 
Sbjct: 18  VVADLETTGLSTASCEILEFAAVRVGADGAAEREYAQVV--RTRATVPPFITRLTGITEA 75

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E  +        F+ F DF  +    +  HNA FD  F++A   +      + +    TL
Sbjct: 76  EVERQGVPVGQAFAAFLDFVEDLPVFF--HNASFDRRFLDAAALQTGLPFANATHC--TL 131

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163
           ++ARR  P    + L+ L +  G   +    H AL D
Sbjct: 132 ALARRAWPELPSHKLDVLARHVG---ASEPTHRALAD 165


>gi|89052623|ref|YP_508074.1| exonuclease [Jannaschia sp. CCS1]
 gi|88862172|gb|ABD53049.1| Exonuclease [Jannaschia sp. CCS1]
          Length = 196

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 12/158 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +     R I  D+ET   ++    I +IG   +      N T    + P  +  SP    
Sbjct: 10  VPDGPFRFIAVDVETA--NNAQGSICQIGLCCVGSDDSLN-TVSTLIDPE-QSFSPFNTD 65

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           LHGI+ E +   P+F   ++  +      NA  +  +++FD     A   R +  P+  S
Sbjct: 66  LHGISAETVNGAPTFPQAYASLYPVL---NAHRLVQHSRFDEAAFTAACARYDV-PMVTS 121

Query: 122 RIIDTLSIARRKHP----SSRNDLNSLCKRYGITISHR 155
              D++ IAR+  P    +  + L SL K  G++  H 
Sbjct: 122 HWTDSVKIARQAWPELKGAGGHGLASLKKALGLSFHHH 159


>gi|269964031|ref|ZP_06178337.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831250|gb|EEZ85403.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 249

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 17/186 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+++ D I+ IG V   L   + + +    + PN R+ + E++ +HGITD 
Sbjct: 60  VSVDFETTGLNAEEDAILTIGLVPFTLGRVQCSGSRHWVVNPN-RELNEESVVIHGITDS 118

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127
            +K+ P    I     D    +    + H    +  F  NA L  + +    P  ++DTL
Sbjct: 119 EVKNAPQLEQILDAILDALAGKIV--VVHYKNIERQFFNNALLNSVGEGIQFP--VVDTL 174

Query: 128 ----SIARRKHPSSRNDLNSLCKRYG-ITISH---RSKHGALLDSHLLSDVYIKMMVGGS 179
               +I RR+     N L    K+ G + + H   R    A    H L+D      +  +
Sbjct: 175 DIEYAIQRRECEGWLNKLKG--KKPGSVRLGHARERYHLPAYQPHHALTDALATAELLQA 232

Query: 180 QINFGF 185
           Q+ + F
Sbjct: 233 QLQYHF 238


>gi|145298879|ref|YP_001141720.1| DNA polymerase III subunit epsilon [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851651|gb|ABO89972.1| DNA polymerase III, epsilon subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 208

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 21/180 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-----LHG 64
           I  D ETT LD     I+ IGAV +    K NR        + R  +P +L      +HG
Sbjct: 32  IALDFETTSLDPARAEIVSIGAVRI----KGNRIL-TGEALSLRVQAPASLNAQSVVIHG 86

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-----INKDPLD 119
           +  + L+      +   +   F   +  E + ++  +D+  +N   Q+     + +  ++
Sbjct: 87  LRHQDLQQGMRLEAALRQLLAFIGPR--ELVGYHIAYDLRILNLACQKQWGLTLAQQGIE 144

Query: 120 PSRII-DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            SR+  D L    R++P +  DL+    R  + +     H AL D+   + +Y+++  GG
Sbjct: 145 VSRLYHDHLY---RRYPDAVIDLHLAAIRQHLNLPSLPVHDALSDAITAALIYLRLTQGG 201


>gi|325269989|ref|ZP_08136598.1| exonuclease [Prevotella multiformis DSM 16608]
 gi|324987712|gb|EGC19686.1| exonuclease [Prevotella multiformis DSM 16608]
          Length = 163

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 13/155 (8%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D ET   +  +  +  +G V ++   +   TF   + P         +++HG+T     D
Sbjct: 8   DFETANFERCS--VCSVGVV-IVRGGEIVDTFYSLIQPEPNYYHWRCVQVHGLTCADTDD 64

Query: 73  KPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            P    +FSE W       +    +AHNA FD G + A       D  D     DTL  A
Sbjct: 65  AP----VFSEVWKVIEPMIEGLPLVAHNAPFDKGCLKAAFYTYQMDYPD-YEFFDTLKAA 119

Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           RR+ P    + L ++    G  +S  + H AL D+
Sbjct: 120 RRRLPDLPDHQLQTVAAECGYDLS--NHHHALADA 152


>gi|8134657|sp|Q9Z5X0|RNT_AZOVI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|4378828|gb|AAD19703.1| putative RNase T [Azotobacter vinelandii]
          Length = 116

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 95  IAHNAKFDVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
           + HN+ FD+ F+NA + R  I ++P  P    DT ++A   +   +  L   C+  GI  
Sbjct: 23  VGHNSSFDLAFLNAAVARCDIKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQSAGIEF 80

Query: 153 SHRSKHGALLDSHLLSDVYIKMM 175
             R  H A  D+   ++++  ++
Sbjct: 81  DGREAHSARYDTEKTAELFCGIV 103


>gi|326385272|ref|ZP_08206935.1| DNA polymerase III subunit epsilon [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196015|gb|EGD53226.1| DNA polymerase III subunit epsilon [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 236

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 29/187 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNG-----RKNSPEALK 61
           R +  D+ETTGL++     +EIGAVE+L+        +V    P+       K SP+AL 
Sbjct: 4   RYVALDLETTGLNTLTACPLEIGAVEILENDPRGPYGRVLGFVPHTPDAVLHKASPDALA 63

Query: 62  LHGITDEFLKDKPSFSSIF--SEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRIN 114
           ++   +  L     ++++   +E  D   E     + A  +  N  +D   + A L    
Sbjct: 64  VNRFYERRL-----YAAMLRPAETADMMLELVELLRGATLVGANVAYDAAILWAWLATFT 118

Query: 115 KDPLDPS--RIIDT-----LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            D   P   R+ D      +++   + PS    L S C+ + +     + H AL D+++ 
Sbjct: 119 DDETPPWHFRLYDVELATEVALNLDRTPS----LRSSCELWNVDTDRDAAHTALGDAYMA 174

Query: 168 SDVYIKM 174
           +DV++ +
Sbjct: 175 ADVFLAV 181


>gi|255576154|ref|XP_002528971.1| exonuclease, putative [Ricinus communis]
 gi|223531561|gb|EEF33390.1| exonuclease, putative [Ricinus communis]
          Length = 194

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 28/174 (16%)

Query: 10  IVFDIETTGLDSKNDR--IIEIGA--------VELLDYSKTNRT--FQVFLCPNGRKNSP 57
           + FD+ETT  +    R  ++E GA        VE+  Y+   R     V    +GR    
Sbjct: 16  VFFDLETTVPNRAGGRFWVLEFGAIIVCPRKLVEIESYTTLIRPKDLSVVALRSGRSG-- 73

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD 116
                 GIT   + D P+F  +  + +   N +   W  HN + FD   I      + KD
Sbjct: 74  ------GITRNAVADAPAFEEVSDKIYSILNGRI--WAGHNIRRFDCIRIKEAFAELGKD 125

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLN--SLCKRYGITISHRSKHGALLDSHLLS 168
           P  P  +ID+L +  +K      +L   +L   +G+    + KH +L D  + S
Sbjct: 126 PPVPVGMIDSLGVLSQKFGRRAGNLKMATLADYFGL---GQQKHRSLDDVRIKS 176


>gi|171059184|ref|YP_001791533.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170776629|gb|ACB34768.1| Exonuclease RNase T and DNA polymerase III [Leptothrix cholodnii
           SP-6]
          Length = 218

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGLD   D II IGAV ++ +   T+   ++ + P  RK S +++++H + ++
Sbjct: 42  VALDCETTGLDVGRDEIIAIGAVRIVGNRIMTSERLELLVRPEKRKLSADSVRVHRLREQ 101

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            +           +   F   +    + +  +FD+  IN
Sbjct: 102 DVAQGLKPEEAVMQLMHFIGSRPL--VGYYLEFDLAMIN 138


>gi|269123524|ref|YP_003306101.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus
           moniliformis DSM 12112]
 gi|268314850|gb|ACZ01224.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus
           moniliformis DSM 12112]
          Length = 205

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 30/187 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-----FQVFLCPN-GRKNSPEALKLH 63
           I FD+ET G++   D ++ I A+++   + TN+      F  F   N G + + +AL ++
Sbjct: 6   IFFDVETNGVNP-TDSVLSISAMKVTYDTITNKMVKLGEFDRFYFRNEGEEPNFDALNVN 64

Query: 64  GITDEFLKDKPSFSSI------------FSEFWDFFNEQNAE-WIAHNAKFDVGFINAEL 110
           G+ D+ ++ + + S I            F EF D     NAE ++AHN +FD  FI  +L
Sbjct: 65  GLFDDEIERRRNLSLIKYAKTFNEDIVNFFEFCD-----NAEHFVAHNIRFDRQFIPFKL 119

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLS 168
           +      L+    ID + I    + SS     L      Y I +     H ++ D  ++ 
Sbjct: 120 KYQFDTMLEN---IDIVKIPSNSYYSSFKWPKLMECANYYNIPVDENELHNSMYDVVIMG 176

Query: 169 DVYIKMM 175
            V  KM+
Sbjct: 177 RVMFKML 183


>gi|256818923|ref|YP_003140202.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM
           7271]
 gi|256580506|gb|ACU91641.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM
           7271]
          Length = 442

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 9/154 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG     + I +I   +   +  T++ F   + P  R       KL GI ++ L
Sbjct: 4   ILDIETTGGKYNEEGITDIAIYQFNGHEITDQ-FISLINPE-RPIQEFVTKLTGINNKML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ P F  +     +     +   + HNA FD   +  E +R+  D +  +  + T+ ++
Sbjct: 62  RNAPKFYEVAKRIVEI--TTDCIIVGHNAAFDYRILQTEFRRLGYDFVRTT--LCTVELS 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGAL 161
            R  P+  +  L  L +  GI +S  HR+   AL
Sbjct: 118 ERLIPNKESYSLGKLVRSLGIPVSDRHRASGDAL 151


>gi|23013261|ref|ZP_00053177.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 302

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 10/102 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-----PEALKLHGI 65
           V D+ETTGLD   D IIE+G V L ++S   R +++       +       PE  +L GI
Sbjct: 44  VVDVETTGLDLVKDEIIELGMV-LFEFSSDGRIYRILDVVEAFQEPTIPILPEITQLTGI 102

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           T E +    +  SI     +      A  IAHNA FD  F+ 
Sbjct: 103 TAEMV----AGHSIDVAEIERLIAPVALVIAHNAGFDRRFLE 140


>gi|150377384|ref|YP_001313979.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419]
 gi|150031931|gb|ABR64046.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium medicae
           WSM419]
          Length = 308

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 49/107 (45%), Gaps = 10/107 (9%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS----PEALKL 62
           +R ++ D ETTGL+ + D IIEIGAV        N    + L    ++ S    PE  +L
Sbjct: 53  LRGLILDTETTGLNHRKDEIIEIGAVAFTFDDAGNIGDVIDLYGGLQQPSISVPPEITRL 112

Query: 63  HGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
            GITDE  L  K     + +       E     IAHNA FD  F  A
Sbjct: 113 TGITDEMVLGQKIDLHRLRA-----VVEPADLIIAHNAGFDRPFCEA 154


>gi|86131778|ref|ZP_01050375.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
 gi|85817600|gb|EAQ38774.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
          Length = 257

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 27/113 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS------------PEA 59
           FD+ETTG++   DRI+EI  +++               P+GR+                 
Sbjct: 12  FDLETTGVNVAKDRIVEISILKVF--------------PDGREEEFTERINPTVPIPAVT 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             +HGI+D  + DKP+F+    E +D   + +      N +FD+  +  EL R
Sbjct: 58  TAVHGISDADVADKPTFAERAKEIYDIIKDSDLAGFNSN-RFDIPLLVEELLR 109


>gi|104773741|ref|YP_618721.1| putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|116513740|ref|YP_812646.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|300813077|ref|ZP_07093455.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|313123346|ref|YP_004033605.1| DNA polymerase iii, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|103422822|emb|CAI97474.1| Putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|116093055|gb|ABJ58208.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|300495918|gb|EFK31062.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|312279909|gb|ADQ60628.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|325125397|gb|ADY84727.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
 gi|325684506|gb|EGD26670.1| exonuclease [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 178

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 7/118 (5%)

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           + +K+H IT E +   P+ + ++ +    F +      AHNA+FD   +   L R     
Sbjct: 49  QQVKVHDITAEDVAGAPTMAEVWPKIQPLF-QPGMLVAAHNARFDCNVMKQSLARYGIA- 106

Query: 118 LDPSR-IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +P   ++D+L ++R   P   N  LN++    G+ + H   H AL DS   + + +K
Sbjct: 107 -EPHYLVLDSLKVSRELEPGLDNYQLNTVSDLLGVELWHH--HNALSDSEACAGILLK 161


>gi|330720110|gb|EGG98518.1| Ribonuclease T [gamma proteobacterium IMCC2047]
          Length = 187

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 25/178 (14%)

Query: 14  IETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQV--FLCPNGRKNSPEALKLHGI 65
           +ET G ++  D ++EI AV +      L Y     +F V  F    G      A+K  GI
Sbjct: 1   METGGFNAATDALLEIAAVPIQMDEQGLLYPGETLSFHVKPF---EGANIEEAAIKFTGI 57

Query: 66  TDEFL------KDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
            D +        ++ +   IF              A  + HNA FD GF+NA  +R  I 
Sbjct: 58  -DPYHPLRIANTEQEAMDGIFRTVRKAVKASGCKRAILVGHNAHFDHGFVNAAAERCDIK 116

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           ++P  P    DT+S+A       +  L   C+   I  S+   H A  D+   ++++ 
Sbjct: 117 RNPFHPFSNFDTVSLAGLA--VGQTVLARACEVAEIEFSNEEAHSARYDTEKTAELFC 172


>gi|262194198|ref|YP_003265407.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077545|gb|ACY13514.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 15/154 (9%)

Query: 7   MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNS-PEALK 61
           M+ +VF D ETTGLD +   I+EI A+ +  + +T    R   + + P   +++ PEAL+
Sbjct: 1   MQPLVFIDCETTGLDPERHEILEIAAIRV--HPQTLDEERELVLRVRPERLEDADPEALE 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LD 119
           ++G       D  S     +E       + A    HN  FD  F+ A    +   P  LD
Sbjct: 59  VNGYRRRAWADAVSLGDAMAELAPML--EGAVLAGHNVAFDRRFLEAAWDYVGHRPENLD 116

Query: 120 PSRIIDTLSIARRKHPSSRND---LNSLCKRYGI 150
               +DT ++A     +   D   L  +C   G+
Sbjct: 117 -HHALDTATLAFPLLMAGEIDSLSLTPVCAHLGV 149


>gi|315224304|ref|ZP_07866138.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga
           ochracea F0287]
 gi|314945694|gb|EFS97709.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga
           ochracea F0287]
          Length = 442

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 9/154 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG     + I +I   +   +  T++ F   + P  R       KL GI ++ L
Sbjct: 4   ILDIETTGGKYNEEGITDIAIYQFNGHEITDQ-FISLINPE-RPIQEFVTKLTGINNKML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ P F  +     +     +   + HNA FD   +  E +R+  D +  +  + T+ ++
Sbjct: 62  RNAPKFYEVAKRIVEI--TTDCIIVGHNAAFDYRILQTEFRRLGYDFVRTT--LCTVELS 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGAL 161
            R  P+  +  L  L +  GI +S  HR+   AL
Sbjct: 118 ERLIPNKESYSLGKLVRSLGIPVSDRHRASGDAL 151


>gi|330719279|ref|ZP_08313879.1| DNA polymerase III, epsilon subunit [Leuconostoc fallax KCTC 3537]
          Length = 177

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +HGI +  + D P FS ++      F E     +AHNA FD G +   L     +  +
Sbjct: 50  VAIHGIEEHDVLDAPKFSELWPVIQPLFTEDKL-VVAHNAPFDNGVLKGTLNYYGLE--E 106

Query: 120 PS-RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHR 155
           P   ++DT+  +R+  PS  N  LN++ +  GI++ H 
Sbjct: 107 PHYMLLDTVRTSRQFFPSFNNHKLNTVAENLGISLVHH 144


>gi|225012865|ref|ZP_03703298.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium
           MS024-2A]
 gi|225002987|gb|EEG40964.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium
           MS024-2A]
          Length = 458

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 10/152 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG     + I EI A+   +  K    F   + P  ++  P   KL GI  + L
Sbjct: 4   ILDIETTGGKYDEEGITEI-AIYKYNGQKVVDQFSSLINPQ-KEIQPFVEKLTGINSKML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  +     +    ++   +AHNA FD   +  E +R+   P +  + I T+ ++
Sbjct: 62  RSAPKFYEVAKRIVEL--TEDCILVAHNASFDYRILQTEFRRLG-FPFE-RKSICTVELS 117

Query: 131 RRKHP-SSRNDLNSLCKRYGITIS--HRSKHG 159
           ++  P      L  L +  GI  S  HR+ HG
Sbjct: 118 QKLLPDEPAYSLGKLVRSLGIPFSDQHRA-HG 148


>gi|126700009|ref|YP_001088906.1| putative DNA polymerase III subunit epsilon [Clostridium difficile
           630]
 gi|254975983|ref|ZP_05272455.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-66c26]
 gi|255093371|ref|ZP_05322849.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           CIP 107932]
 gi|255101551|ref|ZP_05330528.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-63q42]
 gi|255307420|ref|ZP_05351591.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           ATCC 43255]
 gi|255315116|ref|ZP_05356699.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-76w55]
 gi|255517786|ref|ZP_05385462.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-97b34]
 gi|255650901|ref|ZP_05397803.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-37x79]
 gi|260683972|ref|YP_003215257.1| putative DNA polymerase III subunit epsilon [Clostridium difficile
           CD196]
 gi|260687632|ref|YP_003218766.1| putative DNA polymerase III subunit epsilon [Clostridium difficile
           R20291]
 gi|306520788|ref|ZP_07407135.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-32g58]
 gi|115251446|emb|CAJ69279.1| DNA polymerase III, epsilon subunit [Clostridium difficile]
 gi|260210135|emb|CBA64288.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           CD196]
 gi|260213649|emb|CBE05485.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           R20291]
          Length = 168

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 5/159 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGLD      I    +  +   +  + +   + P G  +S    +L  I++E 
Sbjct: 5   VVVDLETTGLDPYKGCEIIEIGITEIKNEQIVKNYSRLIKPKGIISSF-ITELTHISNEM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++++     +   F  +  ++    IAHNAKFD+ F+N  L+ ++ +P++       L  
Sbjct: 64  VENEEPLELVLPRFRKYIGDRTI--IAHNAKFDLKFLNYYLRMLDLEPINNYICTVELLK 121

Query: 130 ARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHL 166
             + +      L + C  Y I    +HR+    L  + L
Sbjct: 122 KCKSYKGKNKKLETACAYYNIENINAHRADSDTLATAKL 160


>gi|300779647|ref|ZP_07089503.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
 gi|300533757|gb|EFK54816.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
          Length = 238

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 6/122 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETTG+   ND I+EIG V L        T++  + P+    + +   +HGI ++ +
Sbjct: 22  VIDFETTGM-RDNDAIVEIGVVLLDKDLSVEDTWEALVNPHRLILNTD---VHGIEEDDV 77

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
               +F ++   F    + +    +AH+A ++  ++  E +R   D   P   IDT+ ++
Sbjct: 78  DRGLTFPALAGYFKHLLHGRT--LVAHDATYEKRYLRYEFERWGMDDTVPDTWIDTMQLS 135

Query: 131 RR 132
            R
Sbjct: 136 SR 137


>gi|332876762|ref|ZP_08444520.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685321|gb|EGJ58160.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 256

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 20/173 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64
           + FD+ETTG++   DRI+E+  +++     + SK+ R        N   + PE +  +HG
Sbjct: 10  VFFDLETTGINITTDRIVELCYIKVYPNGNEESKSMRI-------NPEMHIPESSSAIHG 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSR 122
           I DE + D P+F  +  E  +    +  ++   N+ +FDV  +  E  R   D  +   +
Sbjct: 63  IYDEDVADCPTFKQVARELANTI--KGCDFAGFNSNRFDVPMLVEEFLRAGIDIDIRKRK 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ID  +I    H   R  L++  K Y       + H AL D+    +V +  +
Sbjct: 121 FIDVQNIY---HKLERRTLSAAYKFY-CGKDLENAHSALADTRATYEVLMAQL 169


>gi|255534253|ref|YP_003094624.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium
           3519-10]
 gi|255340449|gb|ACU06562.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium
           3519-10]
          Length = 407

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 9/153 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIE+ G   + + IIEI AV   D  +    F   + P   + +P   KL  I+ + +
Sbjct: 4   VIDIESNGAGFRKESIIEI-AVYKYDGHEIVDQFISLVNPES-EITPFVQKLTKISPKMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K  P F  I     +    +N   + HN  FD   +  E +R+  D       +DT+ +A
Sbjct: 62  KTAPKFPEIARRVIEI--TRNTILVGHNIDFDYRMLRQEFKRLGYD--FTINTLDTIPLA 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITI--SHRSKHGA 160
           ++  P + +  L  L K  GI +   HR+   A
Sbjct: 118 KKLIPEAESYSLGKLVKSLGIPLVDQHRASGDA 150


>gi|254720591|ref|ZP_05182402.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|265985632|ref|ZP_06098367.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13]
 gi|306838555|ref|ZP_07471392.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653]
 gi|264664224|gb|EEZ34485.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13]
 gi|306406341|gb|EFM62583.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653]
          Length = 332

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTGL+   + IIEIGAV               TF     P+ +    E  ++ G
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE +K +    +I  +  D   +     IAHNA FD  F+ 
Sbjct: 133 ITDEMVKGR----TIPRDELDALIDGADIIIAHNAGFDRPFLE 171


>gi|146293452|ref|YP_001183876.1| exonuclease, RNase T and DNA polymerase III [Shewanella
           putrefaciens CN-32]
 gi|145565142|gb|ABP76077.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
           putrefaciens CN-32]
          Length = 223

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 27/168 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +  D+E TGLD   D+I+ IG V +      L+ ++  +  Q+      R +  ++  +H
Sbjct: 38  MAMDLEMTGLDPLQDQILSIGLVPIEHGVIPLEGAQ-QKLVQI------RGSVGQSATIH 90

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR 122
           GI D  L    +     +  W     +    +AH++  D  F+  ++  I ++    PS 
Sbjct: 91  GILDNHLVQAVTIEDAMA--WFIAKTRGRVLVAHHSPLDCRFLQQDILAIYHQAVFLPS- 147

Query: 123 IIDTLSIARRK-----HPSSRNDLN-SLCK-RYGITISHRSKHGALLD 163
            IDTL + +R+     H      L    C+ RYG+ +   S H AL D
Sbjct: 148 -IDTLMLEKRRLLRGHHAIKEGSLRLGACRERYGLPVY--SAHSALTD 192


>gi|297610461|ref|NP_001064570.2| Os10g0407500 [Oryza sativa Japonica Group]
 gi|255679392|dbj|BAF26484.2| Os10g0407500 [Oryza sativa Japonica Group]
          Length = 517

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHN-AKFDVGFINAELQR 112
           S  +++ +GIT + +   P+F  +    +   +E +    W  HN  +FD+  I      
Sbjct: 81  SAASVRCNGITRDAVAAAPAFRDVADAVYSVLHEFSIGRVWAGHNIVRFDLARIREAFAE 140

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT-ISHRS 156
           I + P +P  +IDTL +  +K      D+   SL   +G+   SHRS
Sbjct: 141 IGRPPPEPKGMIDTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRS 187


>gi|305680029|ref|ZP_07402839.1| DNA polymerase III, epsilon subunit [Corynebacterium matruchotii
           ATCC 14266]
 gi|305660649|gb|EFM50146.1| DNA polymerase III, epsilon subunit [Corynebacterium matruchotii
           ATCC 14266]
          Length = 407

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 29/147 (19%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +   ++TTG+     +++ I AV L    + +  F   L      + P    +HG++ E 
Sbjct: 55  VAVTVKTTGIHPSTAQLVVIDAVVLTASGEPDSDFHAVLS---VPDDPGPKHMHGLSREE 111

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL------------------- 110
           + D  SFSSI        + +    I HN     GFI+ E                    
Sbjct: 112 IADGKSFSSILKALGKTIDGRT--MITHNVPLVWGFIHKEARRAMTAAARANRRRGSRGK 169

Query: 111 ----QRINKDPLDPSRIIDTLSIARRK 133
               QR+   P  P  I+D L+ ARR+
Sbjct: 170 PRRRQRVGHVP-RPVGIVDMLATARRR 195


>gi|260102659|ref|ZP_05752896.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260083529|gb|EEW67649.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
          Length = 249

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIETTGLD   D+II IGAV+ +  SK  R ++  L     +      K+  +T E 
Sbjct: 128 VALDIETTGLDITKDQIISIGAVKYISKSKCERFYR--LIKTDYEIPTHISKITQLTSEK 185

Query: 70  LKDKPSFSSIFSEFWD---FFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           L    S   +F    D   F  ++    + +N  FD+ F+N + Q+ N
Sbjct: 186 LNQ--SGIELFDALEDLKKFLADR--LIVGYNLNFDINFLNRDYQKYN 229


>gi|262194078|ref|YP_003265287.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077425|gb|ACY13394.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 15/154 (9%)

Query: 7   MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNS-PEALK 61
           M+ +VF D ETTGLD +   I+EI A+ +  + +T    R   + + P   +++ PEAL+
Sbjct: 1   MQPLVFIDCETTGLDPERHEILEIAAIRV--HPQTLDEERELVLRVRPERLEDADPEALE 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LD 119
           ++G       D  S     +E       + A    HN  FD  F+ A    +   P  LD
Sbjct: 59  VNGYRRRAWADAVSLGDAMAELAPML--EGAVLAGHNVAFDRRFLEAAWDCVGHRPENLD 116

Query: 120 PSRIIDTLSIARRKHPSSRND---LNSLCKRYGI 150
               +DT ++A     +   D   L  +C   G+
Sbjct: 117 -HHALDTAALAFPLLMAGEIDSLSLTPVCAHLGV 149


>gi|260591581|ref|ZP_05857039.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319]
 gi|260536381|gb|EEX18998.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319]
          Length = 896

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 26/169 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV---------ELLD-YSKTNRTFQVFLCPNGRKNSPEA 59
           +VFD ETTGLD   D IIEI A+         E LD Y KT++     L   G K++P  
Sbjct: 515 VVFDTETTGLDVFADDIIEIAAMKIKGGEIVGEPLDLYIKTDKP---ILPKLGDKDNP-- 569

Query: 60  LKLHGITDEFLKDKPSFS--SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             ++ I  E L  +   +       F  +   +    + HNA +D   I+  LQR   D 
Sbjct: 570 --MYAIYHEKLSAEELITPQEALQRFLAYIGTR--PILGHNASYDYNIIDNCLQRYCNDT 625

Query: 118 LDPSR--IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163
           L   +    D+L + R   PS  +  L SL + + +T   ++ H A+ D
Sbjct: 626 LKAHKNPCFDSLKLIRLLSPSLHSYKLESLLETFQLT--GKNSHQAIDD 672


>gi|17988635|ref|NP_541268.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           16M]
 gi|17984439|gb|AAL53532.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str.
           16M]
          Length = 272

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTGL+   + IIEIGAV               TF     P+ +    E  ++ G
Sbjct: 14  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 72

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE +K +    +I  +  D    +    IAHNA FD  F+ 
Sbjct: 73  ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 111


>gi|85706653|ref|ZP_01037745.1| probable DNA polymerase III (epsilon chain) protein [Roseovarius
           sp. 217]
 gi|85668711|gb|EAQ23580.1| probable DNA polymerase III (epsilon chain) protein [Roseovarius
           sp. 217]
          Length = 193

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 14/130 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R    D+E  G  +    IIE+G VE+     T R       P   + +P   ++HGIT+
Sbjct: 3   RMWAVDVEGNG--ATPPEIIELGIVEMDGLRLTGRIKHWQFRPE-LEITPIVSRIHGITN 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--DPLDPSRIID 125
           E + D P F  +  +   +   + A  + HN       +  EL+ ++K      P+   D
Sbjct: 60  EDVADAPPFDDVVDDILLWL--EGAPIVGHN-------VRVELEALSKVLPGWKPAAAYD 110

Query: 126 TLSIARRKHP 135
           TL +ARR  P
Sbjct: 111 TLKVARRLLP 120


>gi|282852211|ref|ZP_06261563.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri 224-1]
 gi|282556630|gb|EFB62240.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri 224-1]
          Length = 937

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 11/153 (7%)

Query: 11  VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68
           V D+ETTG   ++ D II+ G   ++   K  + +   + P+  +  P+A++ L  I++ 
Sbjct: 12  VVDLETTGTQRNQGDHIIQFGCA-IIKKRKVVKIYSFLINPH--REIPQAVENLTHISNR 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     F+    +       +N  ++AHN  FD+ F+N EL     +PL   + IDT+ 
Sbjct: 69  DVAQARDFNYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAIDTVE 125

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           +A+   P+     L  L  R  + I H + H A
Sbjct: 126 LAQIAFPTFPSYKLRDLTAR--LKIKHLNPHRA 156


>gi|110637752|ref|YP_677959.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280433|gb|ABG58619.1| DNA polymerase III epsilon subunit [Cytophaga hutchinsonii ATCC
           33406]
          Length = 283

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 6/103 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL--LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           FD+ETTG++   DRIIEI  V +   D     +TF+V     G     ++  +HGI D+ 
Sbjct: 25  FDLETTGVNISTDRIIEICIVRVSPPDEKVEVKTFRV---NPGMPIPDQSSAIHGIYDKD 81

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           + DKP+F+ I  +   F  + +     ++ +FD+  +  E  R
Sbjct: 82  VADKPTFTEIAHQINQFMKDCDLGGF-NSIRFDIPLLIEEFFR 123


>gi|296533190|ref|ZP_06895816.1| exonuclease RNase T and DNA polymerase III [Roseomonas cervicalis
           ATCC 49957]
 gi|296266484|gb|EFH12483.1| exonuclease RNase T and DNA polymerase III [Roseomonas cervicalis
           ATCC 49957]
          Length = 304

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 60/155 (38%), Gaps = 15/155 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYS--KTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D+ETTGLD   D IIE+  +     LD +       F     P  R   PE   L G
Sbjct: 51  LVLDVETTGLDHGQDEIIELAMLPFTYGLDGTLYSVGEAFSRLRQP-ARPIPPEVTALTG 109

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +TD  +  +    S   E    F    A  IAHNA FD  F  A        P   S  +
Sbjct: 110 LTDAMVAGQ----SFTPEEVAAFIGPAALVIAHNAGFDRRFAEAFCPDFAAKPWACS--L 163

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITI-SHRSKH 158
             +  A       R  L  L  R+G+    HR+ H
Sbjct: 164 HGVDWAAEGFEGRR--LGDLAARHGLFFDGHRAVH 196


>gi|291529581|emb|CBK95167.1| DNA polymerase III, alpha subunit (gram-positive type) [Eubacterium
           rectale M104/1]
          Length = 345

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 12/129 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF------QVFLCPNGRKNSPEAL-KL 62
           +V+D+ETTG  SKN RI+   A+    Y  +           +FL P      P  +  +
Sbjct: 18  VVYDLETTGFKSKNTRILSFSAIR---YQVSEHGMDEIDRRNMFLNP--MMTIPAYITAV 72

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           + IT+E + D P+     +E   + N  +     +NA FD G +N   +RI      P  
Sbjct: 73  NHITNEKVADCPTEYEAGAEILSYLNSADFVSGYNNANFDDGLVNEMARRIGFGKWIPKN 132

Query: 123 IIDTLSIAR 131
            ID + +A+
Sbjct: 133 EIDVMILAK 141


>gi|224124082|ref|XP_002330100.1| predicted protein [Populus trichocarpa]
 gi|222871234|gb|EEF08365.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 10/161 (6%)

Query: 4   KNKMRKIVFDIETT--GLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCP-NGRKNSPEA 59
           +NK     FD+ETT      +   I+E GA+ +     +  R++   + P N +  S  +
Sbjct: 2   ENKTEIAFFDVETTVPTRPGQGYAILEFGAILVCPQKLEEIRSYSTLVRPSNPKLISSLS 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
           ++ +GI  E +   PSF+ I    +D  + +   W  HN  +FD   I      I +   
Sbjct: 62  VRCNGIIPEAVVSAPSFADIADTVYDILHGRI--WAGHNIVRFDCVRIREAFAEIGRAAP 119

Query: 119 DPSRIIDTLSIARRKHPSSRNDLN--SLCKRYGI-TISHRS 156
           +P   ID+L++  +K      ++   SL   +G+   +HRS
Sbjct: 120 EPKGTIDSLALLTQKFGRRAGNMKMASLATYFGLGNQTHRS 160


>gi|256827957|ref|YP_003156685.1| Exonuclease RNase T and DNA polymerase III [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577133|gb|ACU88269.1| Exonuclease RNase T and DNA polymerase III [Desulfomicrobium
           baculatum DSM 4028]
          Length = 177

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 7/146 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   DS  D    +G  ++      +R + +   P  R  SP  + +HGI    
Sbjct: 8   VAIDFETA--DSCRDSACAVGLTKVQGGEIVDRLYGLIRPPRSRF-SPFCVNVHGIHWSD 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +KD P+F   + E   F   + A+++ AHNA FD   + A    +   P      + T+ 
Sbjct: 65  VKDAPAFREFWIENAGFL--EGADFLAAHNASFDRSVLGA-CCTMAGLPAPSLPFVCTVE 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISH 154
           +AR +       L  +C+  G+ ++H
Sbjct: 122 LARNQWNLRPTKLPDVCRHLGLDLNH 147


>gi|225020189|ref|ZP_03709381.1| hypothetical protein CORMATOL_00191 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946933|gb|EEG28142.1| hypothetical protein CORMATOL_00191 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 367

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 29/147 (19%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +   ++TTG+     +++ I AV L    + +  F   L      + P    +HG++ E 
Sbjct: 15  VAVTVKTTGIHPSTAQLVVIDAVVLTASGEPDSDFHAVLS---VPDDPGPKHMHGLSREE 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL------------------- 110
           + D  SFSSI        + +    I HN     GFI+ E                    
Sbjct: 72  IADGKSFSSILKALGKTIDGRT--MITHNVPLVWGFIHKEARRAMTAAARANRRRGSRGK 129

Query: 111 ----QRINKDPLDPSRIIDTLSIARRK 133
               QR+   P  P  I+D L+ ARR+
Sbjct: 130 PRRRQRVGHVP-RPVGIVDMLATARRR 155


>gi|160689446|gb|ABX45581.1| polymerase C [Bacillus atrophaeus]
          Length = 259

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160
           D+GF+N   +R+ K     + +IDTL + R  +P  +N  LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVVYKRLLKVEKAQNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+     + +KM+   ++  I +  + NE+
Sbjct: 59  IYDAEATGYLLLKMLKDAAEKDIQYHDQLNEN 90


>gi|315179445|gb|ADT86359.1| DNA polymerase III, epsilon chain [Vibrio furnissii NCTC 11218]
          Length = 224

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 15/171 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIET+GLD+++D I+ IG V +++        + FL     ++ P+ + LH I  +  +
Sbjct: 37  LDIETSGLDAEHDHIVSIGWVPIVNQVIRLAEARYFLITPSGQDDPQQVVLHHIMPQMQR 96

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI-- 129
                +        F   +    +AH +  +  FI+  +Q+ +  P  P   +DTL I  
Sbjct: 97  QGIPLAQAIELL--FTQLKGKVLLAHGSVVERQFIHHFMQQ-HGWPDLPIVWLDTLKIEQ 153

Query: 130 -----ARRKHP-SSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                A    P S+ ND  L+++ KRY +       H AL D+   +++Y+
Sbjct: 154 AYAQYAPYNTPHSNANDWRLSTVRKRYHLPA--YQAHHALSDAIATAELYL 202


>gi|87121437|ref|ZP_01077326.1| DNA polymerase III subunit epsilon [Marinomonas sp. MED121]
 gi|86163280|gb|EAQ64556.1| DNA polymerase III subunit epsilon [Marinomonas sp. MED121]
          Length = 242

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 18/168 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D+ETTGL S+ D I+ +G+V +        +   ++   G   S +++ +H +T   
Sbjct: 56  IALDLETTGLKSQKDTIVSVGSVAMNAKRIRCASSNYWVVNPGAPLSAQSITIHELTHSD 115

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLS 128
           ++  P  S  F    D    +    + H A  +  F+    +++  +D   P  ++DTL+
Sbjct: 116 VEQAPPLSRYFEAILDALAGKVV--VVHCAAIERQFLYQAAKKLYGQDLFFP--VLDTLA 171

Query: 129 I-----------ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           +           AR    ++   L++  +RYG  +     H AL D++
Sbjct: 172 LEQKILKQRPLMARMFRGNTSVRLDACRQRYG--LPRYKAHHALTDAY 217


>gi|197261475|ref|YP_002154290.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage
           LMA2]
 gi|197244565|emb|CAR31299.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage
           LMA2]
          Length = 184

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 75/180 (41%), Gaps = 24/180 (13%)

Query: 11  VFDIETTGLD-------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           V+D ETTGL         K  RIIE   V + D  K     + F+C  G        K+ 
Sbjct: 5   VWDTETTGLPFHQRVSLRKQPRIIEFAGV-ITDGEKILDEVE-FICNPGIVIEEIITKIT 62

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-------INKD 116
           G+ +E L   PSF     +  DFF+  +A  IAHN  FD   +  +L R       +N  
Sbjct: 63  GLKNEDLIKHPSFLDQRQKVRDFFSRADAN-IAHNLPFDKFMLTCDLARGKFGLDEVNFP 121

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            LD   + ++  +        R  L  L + Y     +  KH AL D  LL +V  +M V
Sbjct: 122 SLDICTVEESAPLF-----GHRMRLQHLYEHY--CGPYVQKHRALDDVRLLHEVCKRMGV 174


>gi|86134050|ref|ZP_01052632.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
 gi|85820913|gb|EAQ42060.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
          Length = 275

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 32/179 (17%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS------PE----- 58
           + FD+ETTG++   DRI+EI  +++               PNG K S      PE     
Sbjct: 10  VFFDLETTGVNIATDRIVEISILKVF--------------PNGNKESKTWLVNPEIEIPQ 55

Query: 59  -ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
            A  +HGIT+E +  +P+F  +  +  +     +      N +FD+  +  EL R   D 
Sbjct: 56  GATDVHGITNEKVVTEPTFKELAGKVSEMIAGCDLAGFNSN-RFDIPLLAEELMRAGIDF 114

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +   + ID   I  +K   +     S   ++         HGA  D++   ++ +  +
Sbjct: 115 DMQNRKAIDVQVIFHKKEQRTL----SAGYQFYCGKELEGAHGAEADTNATYEILLAQV 169


>gi|304413849|ref|ZP_07395266.1| ribonuclease T [Candidatus Regiella insecticola LSR1]
 gi|304283569|gb|EFL91964.1| ribonuclease T [Candidatus Regiella insecticola LSR1]
          Length = 210

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 75/182 (41%), Gaps = 18/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET+G D++ + ++EI AV L      +     T    + P  G     ++L  +G
Sbjct: 20  VVIDVETSGFDAQTNALLEIAAVTLQMNDGGWLHPAETLHFHVAPFEGAILEQKSLSFNG 79

Query: 65  ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR---I 113
           I  +      + +  +  +IF         +    A  +AHNA FD  F+ A  +R   I
Sbjct: 80  INLDNPLRGAISEHKALQTIFETVKKRMKGEGCTRAVVVAHNATFDHRFVMAAAERTGLI 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             +P       DT +++       +  L   C   GI       H AL D+   + ++ +
Sbjct: 140 KHNPFHSFVTFDTAALSALV--LGQTVLAKACLEAGIDFESSQAHSALYDTKQTAKLFCE 197

Query: 174 MM 175
           ++
Sbjct: 198 LV 199


>gi|154507795|ref|ZP_02043437.1| hypothetical protein ACTODO_00277 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797429|gb|EDN79849.1| hypothetical protein ACTODO_00277 [Actinomyces odontolyticus ATCC
           17982]
          Length = 250

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 21/183 (11%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-------FQVFLCPNGRKNSPEALKLHG 64
           FD ETTG+ +  DR++  GA+ L     + R+          +L   G +   +A  +HG
Sbjct: 11  FDTETTGVRALKDRLV-TGALVLRIDGASYRSGVSAPDQVATWLTDPGVEIPEQATAVHG 69

Query: 65  ITDEFL-KDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLD- 119
           IT E   +D      +  E      E   +    +A NA +D+  +N EL+R      + 
Sbjct: 70  ITTEQARRDGRPIEEVLHELAGSIVEHWLRGYPVVAFNATYDITLVNQELRRHRLGSFEE 129

Query: 120 -----PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                P  I+D L + R+  +    +  L  +   YG  ++    H A +D  +  DV  
Sbjct: 130 RLEGAPMLIVDPLVLDRKLDRFRKGKKTLTEMAPVYG-AVASPDAHTAEVDVAMTLDVLA 188

Query: 173 KMM 175
            M+
Sbjct: 189 GMV 191


>gi|260777448|ref|ZP_05886342.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607114|gb|EEX33388.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 239

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 11/124 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGLDS+ D II IG V   L+    N+     + P  ++ + E++ +HGIT  
Sbjct: 50  LAMDFETTGLDSEQDDIITIGTVPFNLNRIFINQAHHWTVRPR-QQLAEESVIIHGITHS 108

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQ-RINKDPLDPSRIID 125
            + D P      SE +D   EQ A    + H  + +  F +  L+ RIN+    P  ++D
Sbjct: 109 DILDAPD----LSEVYDQVLEQMAGKIMVVHYQRIEREFFDRALKDRINEGIEFP--VVD 162

Query: 126 TLSI 129
           T+ +
Sbjct: 163 TMHL 166


>gi|83647725|ref|YP_436160.1| putative exonuclease [Hahella chejuensis KCTC 2396]
 gi|83635768|gb|ABC31735.1| putative exonuclease [Hahella chejuensis KCTC 2396]
          Length = 230

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGI 65
           +R +  D+ETTGL+ K D +I IGAVE+ D S    ++F++ +  +    S   L +HG+
Sbjct: 34  IRWVAADVETTGLNIKKDVVIAIGAVEINDLSICLEQSFELLIDADTHLESDNIL-IHGL 92

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           + + L            F  +     A  +A +A FD   +  E
Sbjct: 93  SQQTLSQGAHPKEAIHSFLSY--AHGAALLAFHAPFDKAMLEKE 134


>gi|62390951|ref|YP_226353.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326290|emb|CAF20452.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease
           [Corynebacterium glutamicum ATCC 13032]
          Length = 476

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 19/101 (18%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-------- 61
           + FD+ET   D  +  I +IG V+ +D      + + +LC       PE+L         
Sbjct: 125 VGFDVETANDDWGS--ICQIGLVKYVD--GVEESSESWLC-----TPPESLNFFNEINIG 175

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           +HGIT E + D+P F+ +  +  +F    +   +AHNA+FD
Sbjct: 176 IHGITPEMVADQPRFADLVPKMVEFVG--DLPLVAHNAQFD 214


>gi|326335468|ref|ZP_08201655.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692234|gb|EGD34186.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 453

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 9/160 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG     + I EI A+   D ++    F   + P  + +   A  L GI+++ +
Sbjct: 4   ILDIETTGGKLNEESITEI-AIYRFDGNEVTDRFISLINPEKKIDDFVA-HLTGISNKMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ P F  +     +  +      +AHNA FD   +  E +R+  D       I T+ ++
Sbjct: 62  RNAPKFYEVAKRIIEITD--GCIIVAHNAAFDYRILRLEFRRLGFD--FHRNTICTVEMS 117

Query: 131 RRKHPS-SRNDLNSLCKRYGITI--SHRSKHGALLDSHLL 167
           +R  P  S   L  L +  GI +   HR+   A+   HL 
Sbjct: 118 QRLLPQESSYSLGKLTRSLGIPLLGRHRANGDAMATVHLF 157


>gi|25028571|ref|NP_738625.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
 gi|23493856|dbj|BAC18825.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
          Length = 569

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGITD 67
           + FD+ET   D  +  I +IG V   +  + + T   F  P    N   P  + +HGIT 
Sbjct: 202 VAFDVETANDDWGS--ICQIGLVRYENGVEVDST-SWFCTPPEPLNFFEPANIAIHGITA 258

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           E +  +P+F+ +  +  DF  +     +AHNA+FD
Sbjct: 259 EQVAGEPAFAEVLPKMVDFVGD--LPLVAHNAQFD 291


>gi|300722831|ref|YP_003712123.1| RNase T [Xenorhabdus nematophila ATCC 19061]
 gi|297629340|emb|CBJ89939.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Xenorhabdus nematophila ATCC 19061]
          Length = 211

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G +++ D ++EI A+ L +D   +     T    + P  G    P AL   G
Sbjct: 12  VVIDVETAGFNARTDALLEIAAITLKMDENGWLMPADTLHFHVDPFEGANLDPAALAFTG 71

Query: 65  I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114
           I  T+     + +  +  +IF        + N   A  +AHNA FD  F+ A  +R  + 
Sbjct: 72  IDPTNPLRGAVSEYTALHAIFKMIRKGMKDTNCNRAIMVAHNASFDHNFVMAAAERSGLK 131

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           + P  P    DT +++       +  L   C    I       H AL D+
Sbjct: 132 RIPFHPFATFDTAALSGLV--LGQTILAKACITAEIPFDSDQAHSALYDT 179


>gi|256027838|ref|ZP_05441672.1| exonuclease, RNase T and DNA polymerase III [Fusobacterium sp. D11]
 gi|289765790|ref|ZP_06525168.1| exonuclease [Fusobacterium sp. D11]
 gi|289717345|gb|EFD81357.1| exonuclease [Fusobacterium sp. D11]
          Length = 191

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 25/173 (14%)

Query: 7   MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLH 63
           M KI+F D ET G++ +   +I++  +  +D  K    F  ++ P  N   N  +AL++ 
Sbjct: 1   MNKIIFIDTETGGVNPEKSALIQLSGIIRID-KKDVEKFNFYIKPFENSEVNE-KALEVQ 58

Query: 64  GIT------DEFLKDKP---SFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQR- 112
           G T      ++++++K     F ++  ++ D +++ +   +A +N +FDV  + A  QR 
Sbjct: 59  GRTLDELKAEKYIEEKEVYKQFINLLDKYIDKYDKTDKFIVAGYNVRFDVDILKALFQRH 118

Query: 113 --------INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI-SHRS 156
                   ++   LDP   I  L IA        N L + CK +GI + +H S
Sbjct: 119 GNNFLFSYLDSSMLDPLYSIRLLQIAGILPVLENNKLETWCKHFGIELKAHDS 171


>gi|187927567|ref|YP_001898054.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12J]
 gi|187724457|gb|ACD25622.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
           12J]
          Length = 216

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 4/99 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGLD + D II IGAV ++ +   T++  ++ + P G +  PE++ +H + + 
Sbjct: 39  VALDCETTGLDVRTDEIISIGAVRIVGNRILTSQRLELLIRPQG-EMRPESICVHRLRNR 97

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            L    S          F   +    + +  +FDV  +N
Sbjct: 98  DLDSGVSIEQAVHTLLHFIGSRPL--VGYYLEFDVAMLN 134


>gi|330804144|ref|XP_003290058.1| hypothetical protein DICPUDRAFT_80810 [Dictyostelium purpureum]
 gi|325079812|gb|EGC33394.1| hypothetical protein DICPUDRAFT_80810 [Dictyostelium purpureum]
          Length = 526

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 19/121 (15%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++K    + D ETTGL S N  IIE+    L     Y K+N T  +         +PE+ 
Sbjct: 239 QSKCNIFILDSETTGLTS-NAEIIELSCACLNGEAFYRKSNPTISI---------TPEST 288

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE------WIAHNAKFDVGFINAELQRIN 114
           K++ +T   L     +  +  EF++F  +Q+++       IAHN K+D G I+  L +  
Sbjct: 289 KINNLTSHDLAGHQYWEKVEEEFFNFIVQQSSDDDAPIYIIAHNEKYDRGRISFHLAKST 348

Query: 115 K 115
           K
Sbjct: 349 K 349


>gi|325279480|ref|YP_004252022.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
 gi|324311289|gb|ADY31842.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
          Length = 190

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 12/115 (10%)

Query: 10  IVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           + FD ETTGL  + +          R++++  +   D      +  V + P G    PEA
Sbjct: 3   LFFDTETTGLPKRWNAPVTDLENWPRLVQLAWIMYDDRGNMLESRDVIVKPEGFTIPPEA 62

Query: 60  LKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
            ++HGIT    ++K      +  +F    +E  A  + HN  FD   + AE +R+
Sbjct: 63  SRVHGITTLVAREKGEPLQEVMEQFARKIDEATA-LVGHNISFDECIVGAEFERL 116


>gi|312898045|ref|ZP_07757451.1| DNA polymerase III subunit epsilon domain protein [Megasphaera
           micronuciformis F0359]
 gi|310620870|gb|EFQ04424.1| DNA polymerase III subunit epsilon domain protein [Megasphaera
           micronuciformis F0359]
          Length = 184

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 8/148 (5%)

Query: 24  DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
           D    + AV +   S  +  + +   P  R +  + +++HGIT + +  KP+F +++ + 
Sbjct: 17  DSACSLAAVSIAGQSVMHEGYTLIKPPFNRFDE-DNIRIHGITPQMVSAKPTFDALWPDI 75

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LN 142
               N++    IAH A FD   + + ++R N   L+ S    T+ I+R+  P   N  L+
Sbjct: 76  RKRLNKR--ILIAHYAVFDTRVLRSLIKRYNLPGLNASYAC-TVEISRKVWPDLPNHKLD 132

Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++    G T  H   H AL D+   + +
Sbjct: 133 TVAGHLGFTFRH---HQALDDARACARI 157


>gi|88859048|ref|ZP_01133689.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas
           tunicata D2]
 gi|88819274|gb|EAR29088.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas
           tunicata D2]
          Length = 210

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 15/184 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCP-NGRKNSPEALKLH 63
           + + +V D+E TGLD K D I+ +  + + +      R+     C  N  K SP     H
Sbjct: 25  RAKYLVIDLELTGLDPKVDEIVSLAWLPIEEQRIIVGRSEHFINCEVNELKQSP---IFH 81

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI    +K          E     ++     + HNA+ D  F+ A  Q  N   L  S +
Sbjct: 82  GIDRFAVKGGVPLRQALLELQPLLDDH--VLVFHNAELDWAFLKAAFQNANL-LLSSSVM 138

Query: 124 IDTLSIARRK-----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176
           +DT+ I  ++     H  + +DLN    R    +     H AL D+   +++++  +  +
Sbjct: 139 LDTMKIEYKRLMNQGHEIASDDLNLARCRSRYQLPEYLTHNALTDALATAELFLAQLNQI 198

Query: 177 GGSQ 180
            G++
Sbjct: 199 AGAK 202


>gi|23308895|ref|NP_601316.2| DNA polymerase III epsilon subunit [Corynebacterium glutamicum ATCC
           13032]
 gi|21324886|dbj|BAB99509.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
           [Corynebacterium glutamicum ATCC 13032]
          Length = 381

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 19/101 (18%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-------- 61
           + FD+ET   D  +  I +IG V+ +D      + + +LC       PE+L         
Sbjct: 30  VGFDVETANDDWGS--ICQIGLVKYVD--GVEESSESWLC-----TPPESLNFFNEINIG 80

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           +HGIT E + D+P F+ +  +  +F    +   +AHNA+FD
Sbjct: 81  IHGITPEMVADQPRFADLVPKMVEFVG--DLPLVAHNAQFD 119


>gi|304437456|ref|ZP_07397414.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369506|gb|EFM23173.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 219

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 36/181 (19%)

Query: 7   MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M+ IV D+E   +  +        N  IIEIGAV L +       FQ ++CP        
Sbjct: 1   MKHIVVDLEMNPVGKEYRDVRRKLNGEIIEIGAVRLNEDFVQEDEFQCYVCPEYGMVKKH 60

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAK------------FDV 103
             +L GIT E +   P+F+  F  F  +  E   +   W   + K            FDV
Sbjct: 61  ITELTGITQEKVAGHPAFADSFHAFVVWIGEAETKIYSWSMSDIKQLRKECRLKLPDFDV 120

Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +++A    + ++  D   + ++L++        ++ L ++ +R+       S+H AL D
Sbjct: 121 TWLDARWVDLQQEFDDRLGLHNSLAL--------KHALGAMGRRF-----EGSQHSALAD 167

Query: 164 S 164
           +
Sbjct: 168 A 168


>gi|194476704|ref|YP_002048883.1| possible DNA polymerase III, epsilon subunit [Paulinella
           chromatophora]
 gi|171191711|gb|ACB42673.1| possible DNA polymerase III, epsilon subunit [Paulinella
           chromatophora]
          Length = 302

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 12/164 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETT L   +   IEIGA+      +   +   FL P   +N+P +  L+GI+ E 
Sbjct: 79  LILDTETTSLSPTDGNCIEIGAILFHLRHRATLSQIAFLLPC--ENNP-SYSLNGISAET 135

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIID-TL 127
            +    + +  S F     E +   +AHNA FD  +   + L  INK  L   + I+  +
Sbjct: 136 TRLIYPWEAGLSYFLTLV-ESSDLIVAHNASFDRQWFGIDPLPIINKPWLCSMQDINWPV 194

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             + R +PS R+    L   YG+ +   S H AL D   +S V+
Sbjct: 195 QRSLRSNPSIRD----LALAYGVPV--WSTHRALTDCLYMSQVF 232


>gi|145296078|ref|YP_001138899.1| hypothetical protein cgR_2000 [Corynebacterium glutamicum R]
 gi|140845998|dbj|BAF54997.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 467

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 19/101 (18%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-------- 61
           + FD+ET   D  +  I +IG V+ +D      + + +LC       PE+L         
Sbjct: 116 VGFDVETANDDWGS--ICQIGLVKYVD--GVEESSESWLC-----TPPESLNFFNEINIG 166

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           +HGIT E + D+P F+ +  +  +F    +   +AHNA+FD
Sbjct: 167 IHGITPEMVADQPRFADLVPKMVEFVG--DLPLVAHNAQFD 205


>gi|213609103|ref|ZP_03368929.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 89

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 153 SHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNI-SLLKRDKP 211
           S R+ HGALLD+ +L++VY+ M  G + + F  +    R  ++ + T+  I     R + 
Sbjct: 3   SKRTLHGALLDAQILAEVYLAMTGGQTSMTFAMEGETQR--QQGEATIQRIVRQASRLRV 60

Query: 212 LFTRITKEELDEHDK---TIQTLGKNAIW 237
           +F   ++EEL  H+     +Q  G + +W
Sbjct: 61  VFA--SEEELAAHESRLDLVQKKGGSCLW 87


>gi|259507628|ref|ZP_05750528.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
 gi|259164807|gb|EEW49361.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
          Length = 494

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGITD 67
           + FD+ET   D  +  I +IG V   +  + + T   F  P    N   P  + +HGIT 
Sbjct: 127 VAFDVETANDDWGS--ICQIGLVRYENGVEVDST-SWFCTPPEPLNFFEPANIAIHGITA 183

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           E +  +P+F+ +  +  DF    +   +AHNA+FD
Sbjct: 184 EQVAGEPAFAEVLPKMVDFVG--DLPLVAHNAQFD 216


>gi|323143315|ref|ZP_08078006.1| ribonuclease T [Succinatimonas hippei YIT 12066]
 gi|322416932|gb|EFY07575.1| ribonuclease T [Succinatimonas hippei YIT 12066]
          Length = 251

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 19/181 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           +V D+ET G + + D ++E+  + +      Y + +      + P    N  P  +   G
Sbjct: 33  VVVDVETAGFNPETDALLEVAMMTMTMDDNGYLQPDEIMSANIRPFPNSNIEPSNIAFLG 92

Query: 65  I---------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114
           I          DE +   P F +I S+         A  + HN  FD+ FI+A  +R+N 
Sbjct: 93  IDPFDESRNLQDERVAVLPMFKAI-SKKMKKEGCTRAILVGHNGFFDLSFIHALAKRLNY 151

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P     + DT S+A   +   +  L   C   GI       HGA  D+ +   ++  
Sbjct: 152 KRCPFHQFTVFDTASLAGLVY--GQTVLARACTAAGIEFEDDKAHGAKYDTLMECKLFCS 209

Query: 174 M 174
           +
Sbjct: 210 I 210


>gi|257068061|ref|YP_003154316.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Brachybacterium faecium DSM 4810]
 gi|256558879|gb|ACU84726.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Brachybacterium faecium DSM 4810]
          Length = 238

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 12/151 (7%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG +   DRI+ +  V  +   +   T   +L     +    A ++HGI+ E  +
Sbjct: 16  FDTETTGTNVARDRIVTVALVHSVGPGREGETVATWLIDPEMEIPEPAQRVHGISTEHAR 75

Query: 72  DKP-SFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPL------DPS 121
                 +    E      E  A+    +A N  FD+  +  EL R+    L      D +
Sbjct: 76  AHGMKAAEALDEVAALIAEALAKEVPLVAFNISFDLAILENELTRLGLPTLAQRLGHDIA 135

Query: 122 RIIDTLSIARR--KHPSSRNDLNSLCKRYGI 150
            +ID L I R   ++   +  L  +   YG+
Sbjct: 136 PVIDALVIDRGVDRYRKGKRTLTDVLAHYGL 166


>gi|260772908|ref|ZP_05881824.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260612047|gb|EEX37250.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 238

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 23/171 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGLD   D II IG V         +  Q ++    +K    ++ +HGIT   
Sbjct: 49  VAMDFETTGLDENKDEIITIGLVPFTLQRVYLKRAQHWIVRPRQKLDEGSVIIHGITHSD 108

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTLS 128
           +   P  S +F         +    +AH  K +  F++   + RIN+    P  IIDT+ 
Sbjct: 109 IMHAPDLSEVFEALLTALEGKIV--VAHYHKIEREFLDQAFKRRINEGIEFP--IIDTMQ 164

Query: 129 IA---------------RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +                R K P S   L    +RYG+     + H AL D+
Sbjct: 165 LEAEIQKRLTAGIWNKLRGKKPQSLR-LGQARQRYGLPAY--NPHHALTDA 212


>gi|313896094|ref|ZP_07829648.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529365|ref|ZP_08030453.1| exonuclease [Selenomonas artemidis F0399]
 gi|312975519|gb|EFR40980.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320138331|gb|EFW30225.1| exonuclease [Selenomonas artemidis F0399]
          Length = 179

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 16/172 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD ETTG  S +D ++ +  V+    +  +  +     P  +K  P+A K++ I+   
Sbjct: 6   LVFDTETTGFRS-DDEVLTLAVVDGAGKTVVDGMY----APVSKKEWPDAEKVNRISPAM 60

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D     +  +E    FN+     + +N +FD+  +     RI     +P+R    L+ 
Sbjct: 61  VADCAPILTHRAELERLFNDPETLLVGYNIEFDIRLLGQSGIRIT----NPNRHDVMLAF 116

Query: 130 AR-RKHPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  RK P +R        L    + Y         HGAL D+      Y +M
Sbjct: 117 SEMRKVPDARRGGYRWWKLTECAEYYRYNWGTTEAHGALADTLATLYCYDQM 168


>gi|120598470|ref|YP_963044.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp.
           W3-18-1]
 gi|120558563|gb|ABM24490.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp.
           W3-18-1]
          Length = 223

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 15/162 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+E TGLD   D+I+ IG V  +++        +      R +  ++  +HGI D  
Sbjct: 38  MAMDLEMTGLDPLQDQILSIGLVP-IEHGVIPLEGALQKLVQIRGSVGQSATIHGILDNH 96

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLS 128
           L    +     +  W     +    +AH++  D  F+  ++  I ++    PS  IDTL 
Sbjct: 97  LVQAVTIEDAMA--WFIAKTRGRVLVAHHSPLDCRFLQQDILAIYHQAVFLPS--IDTLM 152

Query: 129 IARRK-----HPSSRNDLN-SLCK-RYGITISHRSKHGALLD 163
           + +R+     H      L    C+ RYG+ +   S H AL D
Sbjct: 153 LEKRRLLRGHHAIKEGSLRLGACRERYGLPVY--SAHSALTD 192


>gi|238927543|ref|ZP_04659303.1| possible exonuclease [Selenomonas flueggei ATCC 43531]
 gi|238884825|gb|EEQ48463.1| possible exonuclease [Selenomonas flueggei ATCC 43531]
          Length = 219

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 7  MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
          M+ IV D+E   +  +        N  IIEIGAV L +       FQ ++CP        
Sbjct: 1  MKHIVVDLEMNPVGKEYRDVRRKLNGEIIEIGAVRLNEDFVQEDEFQCYVCPEYGMVKKH 60

Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNE 89
            +L GIT E +   P+F+  F  F  +  E
Sbjct: 61 ITELTGITQEKVAGHPAFADSFHAFVAWIGE 91


>gi|327183531|gb|AEA31978.1| hypothetical protein LAB52_05120 [Lactobacillus amylovorus GRL
           1118]
          Length = 298

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 11/159 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           I  D+ETTGL++   +II IGA++  +       F   +  N  +  PE + +L G+T +
Sbjct: 131 IAVDLETTGLNTSRSKIISIGAIK-ENLKGEEEQFYRLIKIN--EAIPEKITELTGLTSK 187

Query: 69  FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L ++  +     +EF  F   +    + +N  FD  F+      I +  L  S + D +
Sbjct: 188 VLNERGVTLEQALNEFRKFVGSEMI--VGYNLSFDNNFLLKAYLSIGQRALVNS-MKDLM 244

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSH 165
            I + K     N DL ++ K YGI   +R  H AL D+ 
Sbjct: 245 GIVKEKDIFLDNYDLETVLKEYGIKNDNR--HNALSDAR 281


>gi|315650299|ref|ZP_07903371.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487410|gb|EFU77720.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 236

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 18/173 (10%)

Query: 10  IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITD 67
           I FD ETTG   +  D+IIE+ A+ + D +   +    F+     +  P+ + +L GI+ 
Sbjct: 13  IFFDTETTGFHPERLDQIIELAAISI-DKTGRQQEMDEFIKLFRVQELPQQITELTGISS 71

Query: 68  EFL--KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDP-----LD 119
           + L  + K  F+ + ++F D          IAHNA+FD+ F+   + R NK+       +
Sbjct: 72  DTLSAQGKDEFA-VLNKFIDMIQGNGKTLLIAHNAQFDLKFMAYAIHR-NKNKEWMQVFN 129

Query: 120 PSRIIDTLSIA--RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
               +DTL++   RR++P   + L S   +Y +    ++ H A+ D   L +V
Sbjct: 130 DCDYLDTLTVYKDRRQYP---HRLESAIVQYHLINKVKNSHRAIDDCRALIEV 179


>gi|300855094|ref|YP_003780078.1| putative exonuclease [Clostridium ljungdahlii DSM 13528]
 gi|300435209|gb|ADK14976.1| predicted exonuclease [Clostridium ljungdahlii DSM 13528]
          Length = 202

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 8/113 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHG 64
           M  I FD ETTGL   N  I ++  + +   +K  +T    +F   +  +  P A K+HG
Sbjct: 1   MNMIFFDTETTGLRPGN--ICQLSYILVDTSAKPTKTIGKNIFFAVDYIE--PSAEKVHG 56

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE-QNAE-WIAHNAKFDVGFINAELQRINK 115
            T E L    S  +      +F N+ QNA+  I HN  FD+ F+++E +  N+
Sbjct: 57  FTVETLYKLSSGMNFKDHLDEFLNDFQNADILIGHNVNFDIKFLSSEFKNCNE 109


>gi|71901523|ref|ZP_00683608.1| Ribonuclease T [Xylella fastidiosa Ann-1]
 gi|71728710|gb|EAO30856.1| Ribonuclease T [Xylella fastidiosa Ann-1]
          Length = 210

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 21/172 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-------QVFLCPNGRKNSPEALKL 62
           +V D+ET G +  +  ++EI  + + +   T R +        V   P G    P++L++
Sbjct: 23  VVVDVETGGFNWNHHALLEIACIPI-EMDDTGRLYPGEVTSTHVIPAP-GTDIDPKSLEV 80

Query: 63  HGITDE----FLKD-KPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRI- 113
            GI  +    F K+ K +   IF+        +  Q A  + HNA FD+ F+NA + R  
Sbjct: 81  TGIILDHPFRFAKEEKLALEHIFTPVRATMKKYKCQRAILVGHNAHFDLNFLNAAVTRTA 140

Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
             ++P     + DT+++A   +   +  L    +  G+  +    H A+ D+
Sbjct: 141 YKRNPFHQFSVFDTVTLAGMAY--GQTVLARAVQAAGLDWNAADAHSAVYDA 190


>gi|325288090|ref|YP_004263880.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489]
 gi|324323544|gb|ADY31009.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489]
          Length = 447

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 14/158 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65
           M   + D+ETTG   + ++I EI   +  D  K    F   + P      P  +  L GI
Sbjct: 1   MMYTIIDVETTG---QTNKITEISIFKF-DGDKVVDEFTSLVNPEDV--IPYYITTLTGI 54

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  + + P+F+ I  +  D    ++  ++AHN  FD   I  E + ++KD     + + 
Sbjct: 55  DNAMVANAPTFAEIAQQVLDI--TEDTIFVAHNVNFDYNVIRNEFKAVDKD--FRRKKLC 110

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGA 160
           T+ ++R+  P   +  L  LCK   I I   HR++  A
Sbjct: 111 TVRLSRKLLPGHNSYSLGKLCKDLDIAIEGRHRARGDA 148


>gi|288799990|ref|ZP_06405449.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333238|gb|EFC71717.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
          Length = 163

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   +S+   +  IG V + +   T+ +F   + P     S    K+HG+T   
Sbjct: 5   VAIDFETA--NSERSSVCSIGIVIVRNGVITD-SFYSTIQPEPNYYSYWCTKVHGLTKSD 61

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            ++ P F  I+ +        N  ++AHN++FD   + A  +    D  D     DTL+ 
Sbjct: 62  TEESPCFHEIWKQIEPKIG--NLPFVAHNSRFDESCLKAVFRVYQMDYPD-YIFFDTLAA 118

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR  P   N  L+++ +  G  +   + H AL D+   + + ++++
Sbjct: 119 ARRVLPHLPNHQLHTVAQECGYCLD--NHHHALADAEACAHIAMQIL 163


>gi|315656881|ref|ZP_07909768.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492836|gb|EFU82440.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 240

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 15/153 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+ +  DRI  +  +  ++ + + R    ++   G    P A +++G+TDE+L+
Sbjct: 19  FDTETTGVFTSRDRIATVSLIRRINGTDSPR---YWIINPGVPMPPAAGRVNGLTDEYLQ 75

Query: 72  DKPSFSSI-FSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPL------DPS 121
                  +   E      E   +    +  N  FD   + AEL R N   L         
Sbjct: 76  ANGVDPRVGLEEVAGIIEETMRRGVPVVGFNVTFDFAILEAELARHNLPTLRQRLEGSVG 135

Query: 122 RIIDTLSIAR--RKHPSSRNDLNSLCKRYGITI 152
            I+D L + R   ++   + +L S+C  Y + +
Sbjct: 136 PIVDPLVLDRILDRYRKGKRNLASVCTAYDLPL 168


>gi|88811452|ref|ZP_01126707.1| ribonuclease T [Nitrococcus mobilis Nb-231]
 gi|88791341|gb|EAR22453.1| ribonuclease T [Nitrococcus mobilis Nb-231]
          Length = 222

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V DIET GL++  D ++++ AV + +D  K      T+   + P +G    P++L+ + 
Sbjct: 28  VVVDIETGGLNASTDALLQLAAVIVRMDEDKRVFPAGTYSTHVEPFDGANIDPKSLEFNR 87

Query: 65  I--TDEFLKDKPSFSSIFSEFWDFFNE------QNAEWIAHNAKFDVGFINAELQR--IN 114
           I         KP   ++   F     E        A  + HN+ FD+ F+NA + R  I 
Sbjct: 88  IDPNHPLRMAKPEEEALRHIFRPIRREIRETGCTRAILVGHNSWFDLCFLNAAVARTGIR 147

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++P  P    DT ++        +  L    K  G +   R  H A+ D+   ++++  +
Sbjct: 148 RNPFHPFTSFDTATLGGLAF--GQTVLARAVKASGASWDGREAHSAIYDAEKTAELFCTI 205

Query: 175 M 175
           +
Sbjct: 206 V 206


>gi|300857574|ref|YP_003782557.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685028|gb|ADK27950.1| DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 348

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 28/146 (19%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +   I+T+G+     R+I + AV   +  +    F   + P    ++P    LHG++ E 
Sbjct: 23  VALSIQTSGIHPSTSRLITVDAVTFTEDGEETDHFHAVINPG---DNPGPFHLHGLSREE 79

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----------------- 112
           +     FS I        + +    I HN  +  GF+ +E +R                 
Sbjct: 80  IAQGKKFSHILKPLGKLIDGRT--LILHNTPYTWGFLVSESRRTMSAAARANRNRYRHRN 137

Query: 113 -----INKDPLDPSRIIDTLSIARRK 133
                +   P  P  I+DTL+ ARR+
Sbjct: 138 RRRQRVGHIP-RPRMIVDTLATARRQ 162


>gi|16262589|ref|NP_435382.1| DNA polymerase III subunit epsilon [Sinorhizobium meliloti 1021]
 gi|307319072|ref|ZP_07598502.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti
           AK83]
 gi|14523204|gb|AAK64794.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306895179|gb|EFN25935.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti
           AK83]
          Length = 325

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 18/111 (16%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-----SPEALK 61
           +R ++ D ETTGLD++   IIEIG V    Y++      V     G +       P+  +
Sbjct: 68  LRGVILDTETTGLDARKCEIIEIGLVSFT-YNEEGEIGDVVAVYGGLQQPTIAIPPDITR 126

Query: 62  LHGITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           L GITD  +     D  +  +I     D         IAHNA FD  F  A
Sbjct: 127 LTGITDAMVAGQSIDIAAVQAIVGPA-DLI-------IAHNAGFDRPFCEA 169


>gi|15838737|ref|NP_299425.1| ribonuclease T [Xylella fastidiosa 9a5c]
 gi|24638168|sp|Q9PBJ8|RNT_XYLFA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|9107281|gb|AAF84945.1|AE004029_5 ribonuclease T [Xylella fastidiosa 9a5c]
          Length = 211

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 21/172 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-------QVFLCPNGRKNSPEALKL 62
           +V D+ET G +  +  ++EI  + + +   T R +        V   P G    P++L++
Sbjct: 24  VVVDVETGGFNWNHHALLEIACIPI-EMDDTGRLYPGEVTSTHVIPAP-GTDIDPKSLEV 81

Query: 63  HGITDE----FLKD-KPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRI- 113
            GI  +    F K+ K +   IF+        +  Q A  + HNA FD+ F+NA + R  
Sbjct: 82  TGIILDHPFRFAKEEKLALEHIFTPVRATMKKYKCQRAILVGHNAHFDLNFLNAAVTRTA 141

Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
             ++P     + DT+++A   +   +  L    +  G+  +    H A+ D+
Sbjct: 142 YKRNPFHQFSVFDTVTLAGMAY--GQTVLARAVQAAGLDWNAADAHSAVYDA 191


>gi|315641337|ref|ZP_07896413.1| exonuclease [Enterococcus italicus DSM 15952]
 gi|315482910|gb|EFU73430.1| exonuclease [Enterococcus italicus DSM 15952]
          Length = 177

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI  + +K  P F  ++     +FN  +   IAHNA FD G +   L   N +   
Sbjct: 50  IQIHGIKPQDVKTAPKFPEVWESIAQYFNPYSL-IIAHNAPFDNGVLAGCLDYYNLE--Q 106

Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P  + +DT+  +R+ + +  N  LN++C    I +   + H AL DS   +++ +
Sbjct: 107 PHYLTLDTVRTSRKFYQNLPNHRLNTVCGYLDIPL--LNHHDALEDSRACAEILL 159


>gi|126641114|ref|YP_001084098.1| ribonuclease T [Acinetobacter baumannii ATCC 17978]
          Length = 172

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 91  NAEWIAHNAKFDVGFINAELQRI---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR 147
           +A  + HNA FD+GF+ A + R    N++P     ++DT++++       +  L   C +
Sbjct: 72  HAVLVGHNAHFDLGFLQAAIARSGTKNQNPFHSFSVMDTVTLSAVMF--GQTVLAKACIQ 129

Query: 148 YGITISHRSKHGALLDSHLLSDVYIKMM 175
            GI    +  H AL D+   ++++  ++
Sbjct: 130 AGIEFDGKEAHSALYDTQKTAELFCYIL 157


>gi|298252322|ref|ZP_06976124.1| Exonuclease RNase T and DNA polymerase III [Ktedonobacter racemifer
           DSM 44963]
 gi|297545742|gb|EFH79611.1| Exonuclease RNase T and DNA polymerase III [Ktedonobacter racemifer
           DSM 44963]
          Length = 471

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 14/100 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            FD ETTGLDS+ D+II+        +LL       T  +         S  A ++HGIT
Sbjct: 26  TFDSETTGLDSE-DQIIQWAVCNQEGQLLGSGYIKPTVPI---------SEGAFEIHGIT 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           +  L + P F+  +    D         + +N+ FD+G +
Sbjct: 76  EAQLANAPLFAESWPTIRDLLTASGKTVVIYNSNFDIGML 115


>gi|110289067|gb|ABG66074.1| exonuclease family protein, putative, expressed [Oryza sativa
           Japonica Group]
          Length = 267

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRIN 114
           S  +++ +GIT + +   P+F  +    +   + +   W  HN  +FD+  I      I 
Sbjct: 81  SAASVRCNGITRDAVAAAPAFRDVADAVYSVLHGR--VWAGHNIVRFDLARIREAFAEIG 138

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT-ISHRS 156
           + P +P  +IDTL +  +K      D+   SL   +G+   SHRS
Sbjct: 139 RPPPEPKGMIDTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRS 183


>gi|86358436|ref|YP_470328.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli CFN 42]
 gi|86282538|gb|ABC91601.1| probable DNA polymerase III, epsilon subunit protein [Rhizobium
           etli CFN 42]
          Length = 196

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 7/149 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      +G +  ++  +  R  +  + P   + S   + +HGI 
Sbjct: 1   MKTIAIDFETA--NEQRGSACSVG-LAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D P F  +  EF +  +   A  IAHNA FD     A L  + +        + +
Sbjct: 58  PEHVEDAPEFPEVMDEFHE--DISGATMIAHNAAFDFSVWRASLD-LYRQSYPELTYLCS 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISH 154
           L +A+R  P    + LN + +  G+   H
Sbjct: 115 LKMAQRIWPHFLSHRLNLIAEHLGLRFMH 143


>gi|306840939|ref|ZP_07473681.1| DNA polymerase III subunit epsilon [Brucella sp. BO2]
 gi|306289062|gb|EFM60324.1| DNA polymerase III subunit epsilon [Brucella sp. BO2]
          Length = 332

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 10/103 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTGL+   + IIEIGAV               TF     P+ +    E  ++ G
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE +K +    +I  +  D         IAHNA FD  F+ 
Sbjct: 133 ITDEMVKGR----TIPRDELDALIAGADIIIAHNAGFDRPFLE 171


>gi|160689346|gb|ABX45531.1| polymerase C [Bacillus vallismortis]
          Length = 259

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160
           D+GF+N   +R+ +     + +IDTL + R  +P  +N  LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKRLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+   + + +KM+   ++  I +  + NE+
Sbjct: 59  IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90


>gi|153832018|ref|ZP_01984685.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
 gi|148872016|gb|EDL70839.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
          Length = 249

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 17/186 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+++ D I+ IG V   L   + + +    + PN R+ + E++ +HGITD 
Sbjct: 60  VSVDFETTGLNAEQDAILTIGLVPFTLGRVQCSGSRHWVVNPN-RELNEESVVIHGITDS 118

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127
            +K+ P    I     D    +    + H    +  F  NA L  + +    P  ++DTL
Sbjct: 119 EVKNAPQLEQILDAILDELAGKIV--VVHYKNIERQFFNNALLNSLGEGIQFP--VVDTL 174

Query: 128 ----SIARRKHPSSRNDLNSLCKRYG-ITISH---RSKHGALLDSHLLSDVYIKMMVGGS 179
               +I RR+     N L    K+ G + + H   R    A    H L+D      +  +
Sbjct: 175 DIEYAIQRRECEGWLNKLKG--KKPGSVRLGHARERYHLPAYQPHHALTDALATAELLQA 232

Query: 180 QINFGF 185
           Q+ + F
Sbjct: 233 QLQYHF 238


>gi|257468536|ref|ZP_05632630.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium ulcerans
           ATCC 49185]
 gi|317062795|ref|ZP_07927280.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
 gi|313688471|gb|EFS25306.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
          Length = 190

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 21/164 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65
           M+ +  D ET GL+ K   +I++  +  +D  K    F  F+ P      + +AL++ G 
Sbjct: 1   MKILFIDTETGGLNPKESALIQLSGIVRID-KKDVEEFNFFIKPFAESEVNAKALEVQGR 59

Query: 66  TDEFL---KDKPS------FSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQR--- 112
           T++ L   K +P       F  I   + D +++ +   +A +N KFD+  + +  +R   
Sbjct: 60  TEKELETEKYRPEKEVYTDFKKILDRYIDKYDKTDKFIVAGYNVKFDIDMLQSFFKRNGD 119

Query: 113 ------INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150
                 I+   LDP   I  L +         N L + C+ +GI
Sbjct: 120 NFLFSYISSSVLDPLPCIGMLQLCEVLPELKNNKLETWCEYFGI 163


>gi|153821463|ref|ZP_01974130.1| exonuclease family [Vibrio cholerae B33]
 gi|229509131|ref|ZP_04398618.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
           [Vibrio cholerae B33]
 gi|229608803|ref|YP_002879451.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Vibrio
           cholerae MJ-1236]
 gi|126521063|gb|EAZ78286.1| exonuclease family [Vibrio cholerae B33]
 gi|229353888|gb|EEO18823.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
           [Vibrio cholerae B33]
 gi|229371458|gb|ACQ61881.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Vibrio
           cholerae MJ-1236]
          Length = 301

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 9/103 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64
           ++ D ETTGL ++++ IIE+G V++L      R   +     L  +  K  PE + +L G
Sbjct: 53  VLLDTETTGLSAEDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITD+ ++ +    S+ +     +   +   +AHNA+FD  F  
Sbjct: 113 ITDDMVQGQHIDDSLVAS----WLSDDPLVVAHNAQFDRPFFE 151


>gi|160689390|gb|ABX45553.1| polymerase C [Bacillus mojavensis]
 gi|160689392|gb|ABX45554.1| polymerase C [Bacillus mojavensis]
 gi|160689432|gb|ABX45574.1| polymerase C [Bacillus mojavensis]
          Length = 259

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160
           D+GF+N   +++ +     + +IDTL + R  +P  +N  LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAFKKLLQVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFNIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+   + + +KM+   ++  I +  + NE+
Sbjct: 59  IYDTEATAYLLLKMLEDAAEKGIQYHDQLNEN 90


>gi|56692916|ref|YP_164280.1| exonuclease [Pseudomonas phage F116]
 gi|48527502|gb|AAT45877.1| exonuclease [Pseudomonas phage F116]
          Length = 201

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 11  VFDIETTGL--------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +FD ETTG+        D     I+E+ A+       T   F+  + PNG + +PE   +
Sbjct: 5   IFDFETTGIPEWKLPSEDPCQPHIVEVAALLCDAAGNTIDRFEAIVRPNGWEITPEMTAI 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           HGI+ E   D     +   E +   N + A   AHN  FD
Sbjct: 65  HGISHEQAMDVGISEAEALEGFLAINGRAARRAAHNISFD 104


>gi|254240149|ref|ZP_04933471.1| exonuclease [Pseudomonas aeruginosa 2192]
 gi|126193527|gb|EAZ57590.1| exonuclease [Pseudomonas aeruginosa 2192]
          Length = 201

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 11  VFDIETTGL--------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +FD ETTG+        D     I+E+ A+       T   F+  + PNG + +PE   +
Sbjct: 5   IFDFETTGIPEWKLPSEDPCQPHIVEVAALLCDAAGNTIDRFEAIVRPNGWEITPEMTAI 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           HGI+ E   D     +   E +   N + A   AHN  FD
Sbjct: 65  HGISHEQAMDVGISEAEALEGFLAINGRAARRAAHNISFD 104


>gi|254850923|ref|ZP_05240273.1| exonuclease family [Vibrio cholerae MO10]
 gi|21885332|gb|AAL59738.1| unknown [Vibrio cholerae]
 gi|254846628|gb|EET25042.1| exonuclease family [Vibrio cholerae MO10]
 gi|259156302|gb|ACV96248.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ind4]
          Length = 302

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 9/103 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64
           ++ D ETTGL ++++ IIE+G V++L      R   +     L  +  K  PE + +L G
Sbjct: 53  VLLDTETTGLSAEDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITD+ ++ +    S+ +     +   +   +AHNA+FD  F  
Sbjct: 113 ITDDMVQGQHIDDSLVAS----WLSDDPLVVAHNAQFDRPFFE 151


>gi|189423312|ref|YP_001950489.1| exonuclease RNase T and DNA polymerase III [Geobacter lovleyi SZ]
 gi|189419571|gb|ACD93969.1| Exonuclease RNase T and DNA polymerase III [Geobacter lovleyi SZ]
          Length = 302

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 9/117 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-----SPEALKLHG 64
           +  D ETTGL+   D+IIE+G V       T+   ++     G ++     S E   + G
Sbjct: 45  LCLDTETTGLNPACDKIIELGIVAFQYDPLTSGIIKIIGRYAGFEDPGIPLSAETTAITG 104

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           ITDE +  +    +      D    Q +  IAHNA FD  F+ A     +K P   S
Sbjct: 105 ITDEMVSGQSFDDAQVCRLAD----QASLVIAHNAAFDRKFVEARFPVFSKVPWGCS 157


>gi|306846211|ref|ZP_07478773.1| DNA polymerase III subunit epsilon [Brucella sp. BO1]
 gi|306273462|gb|EFM55323.1| DNA polymerase III subunit epsilon [Brucella sp. BO1]
          Length = 332

 Score = 42.7 bits (99), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 10/103 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTGL+   + IIEIGAV               TF     P+ +    E  ++ G
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE +K +    +I  +  D         IAHNA FD  F+ 
Sbjct: 133 ITDEMVKGR----TIPRDELDALIAGADIIIAHNAGFDRPFLE 171


>gi|190892568|ref|YP_001979110.1| DNA polymerase III protein, epsilon subunit [Rhizobium etli CIAT
           652]
 gi|190697847|gb|ACE91932.1| probable DNA polymerase III protein, epsilon subunit [Rhizobium
           etli CIAT 652]
          Length = 196

 Score = 42.7 bits (99), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 7/149 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      +G +  ++  +  R  +  + P   + S   + +HGI 
Sbjct: 1   MKTIAIDFETA--NEQRGSACSVG-LAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D P F  +  EF +  +   A  IAHNA FD     A L  + +        + +
Sbjct: 58  PEHVEDAPEFPEVMDEFHE--DISGATMIAHNAAFDFSVWRASLD-LYRQSYPELTYLCS 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISH 154
           L +A+R  P    + LN + +  G+   H
Sbjct: 115 LKMAQRIWPHFLSHRLNLIAEHLGLRFMH 143


>gi|297842185|ref|XP_002888974.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297334815|gb|EFH65233.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 506

 Score = 42.7 bits (99), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 24/160 (15%)

Query: 12  FDIETTGLDSKNDR---IIEIGA--------VELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           FD+ET  + +K+ +   I+E GA        VEL  YS   +   + L     K      
Sbjct: 16  FDLET-AVPTKSGQPFAILEFGAILVCPRKLVELYSYSTLVQPTDLSLISTLTK------ 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLD 119
           +  GIT + +   P+FS I  E +D  + +   W  HN K FD   I      I   P +
Sbjct: 69  RRSGITRDGVLSAPTFSEIADEVYDILHGRI--WAGHNIKRFDCVRIRDAFAEIGLCPPE 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT-ISHRS 156
           P   ID+LS+  +K      D+   SL   +G+   +HRS
Sbjct: 127 PKATIDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRS 166


>gi|254425359|ref|ZP_05039077.1| exonuclease family [Synechococcus sp. PCC 7335]
 gi|196192848|gb|EDX87812.1| exonuclease family [Synechococcus sp. PCC 7335]
          Length = 273

 Score = 42.7 bits (99), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 12/116 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITD 67
           V D+ETTG    N R+IE+  +   L D  +   ++ +    N +   PE + ++ GIT 
Sbjct: 33  VVDVETTGALGHNARVIEVSVLHASLADGLEHQESYLI----NPQVKIPEYITRITGITP 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLD 119
           E +   P    I+ +      E +  + AHN  FD  F+  E +R+     K PL 
Sbjct: 89  EMVYSSPPPEEIWPKCQPLL-EGDRVFTAHNLDFDYSFLRTEYKRLGIRFYKPPLQ 143


>gi|169347300|ref|ZP_02866238.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552]
 gi|169293917|gb|EDS76050.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552]
          Length = 261

 Score = 42.7 bits (99), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 11/147 (7%)

Query: 6   KMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLH 63
           K + +V D ETTG++   ND ++++  V   D    N      LC P    + P A +++
Sbjct: 2   KNKYVVLDFETTGVNRYHNDEVVQVAIVNQDDEVLINE-----LCKPKHHFSWPSAQRIN 56

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPL-DPS 121
           GI+   +KDK  F S      + F+  N+E+I  +N  F+ G +      I+K    DP 
Sbjct: 57  GISPLMVKDKLCFESYIDRIIEIFD--NSEFIVCYNIAFEQGMLKNYGIDISKYVFKDPM 114

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY 148
           +    +   R  H   +    S C +Y
Sbjct: 115 KDFAYIYGERGYHGGYKWQSLSTCAKY 141


>gi|71657888|ref|XP_817452.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain
           CL Brener]
 gi|70882645|gb|EAN95601.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
           cruzi]
          Length = 1417

 Score = 42.4 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFDIE+TGL++  D IIEI A + ++ +    +F   + P  R    E + +H ITD
Sbjct: 774 RLVVFDIESTGLNTATDAIIEIAAWDPVEAT----SFSSLVDPE-RSIPQETMAIHHITD 828

Query: 68  EFLKDKPSFSSI 79
             ++  P    +
Sbjct: 829 GMVRGAPRLPEV 840


>gi|297571869|ref|YP_003697643.1| exonuclease RNase T and DNA polymerase III [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296932216|gb|ADH93024.1| Exonuclease RNase T and DNA polymerase III [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 228

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 19/156 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI-TDE 68
           + FD ETTG+D   +R++   +V +++     R +  +L   G     +A  +HGI T++
Sbjct: 8   VGFDTETTGVDPTRERLV-TASVVVVEEDGVTRHY--WLADPGVDIPLQASNVHGISTEQ 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRIN--------KDP 117
             ++      +  E  D   +  A     +A NA +D+  +  EL+R            P
Sbjct: 65  ARREGEPVEKVLGEVADLLVQHMAAGHPVVAFNASYDLTLMECELERHGLPTLAERLGGP 124

Query: 118 LDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGIT 151
           + P  +ID   + R   ++   +  L +L + YG+ 
Sbjct: 125 VGP--VIDPYMLDRSVDRYRRGKRRLENLAEHYGVA 158


>gi|259156611|gb|ACV96554.1| exonuclease, RNase T and DNA polymerase III [Vibrio fluvialis Ind1]
          Length = 301

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 9/103 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64
           ++ D ETTGL + ++ IIE+G V++L      R   +     L  +  K  PE + +L G
Sbjct: 53  VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE ++ +    ++ +     +   +   +AHNA+FD  F  
Sbjct: 113 ITDEMVQGQHIDDALVAS----WLSDDPLVVAHNAQFDRPFFE 151


>gi|218148597|ref|YP_002364365.1| hypothetical protein PP141_gp57 [Pseudomonas phage 14-1]
 gi|218059793|emb|CAU13913.1| hypothetical protein [Pseudomonas phage 14-1]
 gi|294663797|gb|ADF29351.1| putative DNA polymerase III epsilon subunit [Pseudomonas phage
           JG024]
          Length = 184

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 74/180 (41%), Gaps = 24/180 (13%)

Query: 11  VFDIETTGLD-------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           V+D ETTGL         K  RIIE   V + D  K     + F+C  G        K+ 
Sbjct: 5   VWDTETTGLPFHQRVSLRKQPRIIEFAGV-ITDGEKILDEVE-FICNPGIVIEEIITKIT 62

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-------INKD 116
           G+ +E L   PSF     +  DFF   +A  IAHN  FD   +  +L R       +N  
Sbjct: 63  GLKNEDLIKHPSFLDQRQKVRDFFARADAN-IAHNLPFDKFMLTCDLARGKLGLEEVNFP 121

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            LD   + ++  +        R  L  L + Y     +  KH AL D  LL +V  +M V
Sbjct: 122 SLDICTVEESAPLF-----GHRMRLQHLYEHY--CGPYVQKHRALDDVRLLHEVCKRMGV 174


>gi|116671124|ref|YP_832057.1| exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24]
 gi|116611233|gb|ABK03957.1| Exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24]
          Length = 337

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI  E +   P F  +F E   F         AHNA FD+G I + L+ ++  P  
Sbjct: 55  VRIHGIRPEDVAGLPRFGELFPEIGAFIGGDV--LAAHNAAFDLGVIRSALE-VSGLPGP 111

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               + T+ ++RR +    N L    +  G+ + +   H A  D+   + + I +
Sbjct: 112 AYDYVCTVMLSRRCYSLVSNSLPYAAEEAGVPLVN--HHDAAEDARACAGILIDI 164


>gi|78779006|ref|YP_397118.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9312]
 gi|78712505|gb|ABB49682.1| DNA polymerase III, epsilon subunit [Prochlorococcus marinus str.
           MIT 9312]
          Length = 259

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 34/204 (16%)

Query: 6   KMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLH 63
           K+ KI + D ETTGLD   D +IEIG + L D S      QV FL P    N+ EA  ++
Sbjct: 34  KIEKILILDTETTGLDENKDEVIEIGCI-LFDVSFKCVLSQVSFLLP---VNNNEAEHVN 89

Query: 64  GITDEF------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKD 116
            I+ E        +D  +F     +  DF        +AHN +FD   F    L  +NK 
Sbjct: 90  CISAEVTNISQPWEDGLNFFLKLVDCSDFI-------VAHNVEFDKKWFGKGRLPMLNKK 142

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK--- 173
            +     +D ++ + +K   +R  +  L   + I + +   H AL D   +S+V+ K   
Sbjct: 143 WICS---LDDINWSFQKSLKTRPSVTDLALSFSIPVWNL--HRALSDCFYISEVFKKCDN 197

Query: 174 ---MMVGGSQINFGFK---TNEDR 191
              +++  ++  F +K   + EDR
Sbjct: 198 LEELLLKATEPRFLYKALVSYEDR 221


>gi|15451563|gb|AAK98687.1|AC021893_21 Putative exonuclease [Oryza sativa Japonica Group]
 gi|31432001|gb|AAP53700.1| exonuclease family protein, putative, expressed [Oryza sativa
           Japonica Group]
          Length = 493

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRIN 114
           S  +++ +GIT + +   P+F  +    +   + +   W  HN  +FD+  I      I 
Sbjct: 81  SAASVRCNGITRDAVAAAPAFRDVADAVYSVLHGR--VWAGHNIVRFDLARIREAFAEIG 138

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT-ISHRS 156
           + P +P  +IDTL +  +K      D+   SL   +G+   SHRS
Sbjct: 139 RPPPEPKGMIDTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRS 183


>gi|27379228|ref|NP_770757.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27352379|dbj|BAC49382.1| blr4117 [Bradyrhizobium japonicum USDA 110]
          Length = 223

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 78/170 (45%), Gaps = 8/170 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL+ + D ++ I A+++  +   T+  F+  + P+    + EA+K+H +   
Sbjct: 33  VVIDCETTGLNVRTDNVVAIAAIKIRGNRILTSARFEAIVHPDSELEA-EAIKIHRLRRS 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P    +   F  F   +    I +   FD+  ++  +  +    L   RI  +  
Sbjct: 92  DVEASPIVWKVLPGFLHFIGPR--PLIGYYVDFDIAMLDKYILPLVGIELPNERIEVSRL 149

Query: 129 IARRKH----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              RK+    P++  DL+     + + I    +H A  D+ + + +++++
Sbjct: 150 YYERKYGNAPPNTEVDLSFAAILHDLCIPPLGQHDAFNDALMTAMMFLQL 199


>gi|325508152|gb|ADZ19788.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum EA
           2018]
          Length = 317

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 14/176 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I + +M+    D ET   + K +    IG V + D     ++  + + P   +  P  + 
Sbjct: 7   IWRKEMKFTAIDFETA--NEKRNSPCSIGIVVVKDGHVVEKSHHL-IRPKEMRFMPINIG 63

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLD 119
           +HGI    ++ +P F  ++ +   +F++     IAHNA FD+  +  +AEL  I    L 
Sbjct: 64  IHGIRPAMVEKEPEFDKVWEKIKHYFDDTLV--IAHNASFDISVLRKSAELYNIE---LP 118

Query: 120 PSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               I T+ +AR  +    N  LN++    G    H   H AL D+   S++ + +
Sbjct: 119 EFNYICTMKLARNFYKGIENAKLNTVNNFLGYEFRH---HDALYDALACSNIMLSI 171


>gi|315180012|gb|ADT86926.1| DNA polymerase III subunit epsilon [Vibrio furnissii NCTC 11218]
          Length = 238

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 5/121 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL    D II IG V   L+    NR     + P  +K    ++ +HGIT  
Sbjct: 49  VAMDFETTGLSVDKDEIITIGLVPFTLERIYLNRAKHWTVRPR-QKLDEHSIVIHGITHN 107

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P  S IF E  +    +    + H  + +  F++  L+R   + ++   +IDT+ 
Sbjct: 108 DIMDAPDLSDIFEEVLEHLAGRVL--VVHYHRIEREFLDRALKRRIGEGIE-FPVIDTME 164

Query: 129 I 129
           I
Sbjct: 165 I 165


>gi|307300662|ref|ZP_07580437.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti
           BL225C]
 gi|306904196|gb|EFN34781.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti
           BL225C]
          Length = 325

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 18/111 (16%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-----SPEALK 61
           +R ++ D ETTGLD++   IIEIG V    Y++      V     G +       P+  +
Sbjct: 68  LRGVILDTETTGLDARKCEIIEIGLVSFT-YNEEGEIGDVVAIYGGLQQPTIAIPPDITR 126

Query: 62  LHGITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           L GITD  +     D  +  +I     D         IAHNA FD  F  A
Sbjct: 127 LTGITDAMVAGQSIDIAAVQAIVGPA-DLI-------IAHNAGFDRPFCEA 169


>gi|237748400|ref|ZP_04578880.1| exonuclease family protein [Oxalobacter formigenes OXCC13]
 gi|229379762|gb|EEO29853.1| exonuclease family protein [Oxalobacter formigenes OXCC13]
          Length = 327

 Score = 42.4 bits (98), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 52/104 (50%), Gaps = 14/104 (13%)

Query: 10  IVF-DIETTGLDSKNDRIIEIGAVELLDYSKT-------NRTFQVFLCPNGRKNSPEALK 61
           IVF D ETTGL S  D IIE+G V+ L +S T        R    +  P G+  +P   +
Sbjct: 78  IVFLDTETTGLSSDMDVIIELGLVKAL-FSPTAHRLVSIERIVSAYEDP-GKPITPFITE 135

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           L GITD+ ++ K    ++ + F D         +AHNA FD  F
Sbjct: 136 LTGITDDMVRGKRIDETMVAGFLD----DAVLIVAHNAAFDRPF 175


>gi|19069923|emb|CAC38117.2| polymerase epsilon subunit like protein [Providencia rettgeri]
 gi|19882268|gb|AAM01212.1| putative 3'-5'exonuclease [IncJ plasmid R391]
 gi|20095154|gb|AAM08020.1| hypothetical protein [Providencia rettgeri]
 gi|262318129|dbj|BAI48455.1| hypothetical protein [Proteus mirabilis]
          Length = 302

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 9/103 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64
           ++ D ETTGL + ++ IIE+G V++L      R   +     L  +  K  PE + +L G
Sbjct: 53  VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE ++ +    ++ +     +   +   +AHNA+FD  F  
Sbjct: 113 ITDEMVQGQRIDDALVAS----WLSDDPLVVAHNAQFDRPFFE 151


>gi|313682834|ref|YP_004060572.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155694|gb|ADR34372.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 293

 Score = 42.4 bits (98), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 26/181 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+ D ETTG   + DRI ++  + + D           LC      S EA+ +H IT E 
Sbjct: 5   IILDTETTG-AGEVDRICQLSYL-VCDEKGEILELHNDLCTPPLPISFEAMAIHHITPEM 62

Query: 70  LKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           L   P    +S F+   +  N  +   +  NA+FD+G +  E   +        +++DT 
Sbjct: 63  LTGAPKCIETSAFNRLAE-LNTPDNLMVIQNAEFDLGMLAKEGMGLE------MKLVDTF 115

Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSK------------HGALLDSHLLSDVYIKM 174
            + R  HP  + + L    KRY   + H+ +            H AL D  +L  +Y K+
Sbjct: 116 RVLRAWHPLDTPHGLQF--KRYQWGLYHKEQPLIDKLGIEIKAHDALGDVIVLKHLYEKL 173

Query: 175 M 175
           +
Sbjct: 174 L 174


>gi|304389634|ref|ZP_07371596.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327187|gb|EFL94423.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 240

 Score = 42.4 bits (98), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 15/153 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+ +  DRI  +  +  ++ + + R    ++   G    P A +++G+TDE+L+
Sbjct: 19  FDTETTGVFTSRDRIATVSLIRRINGTDSPR---YWIINPGVPMPPAAGRVNGLTDEYLQ 75

Query: 72  DKPSFSSI-FSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPL------DPS 121
                  +   E      E   +    +  N  FD   + AEL R N   L         
Sbjct: 76  AHGVDPRVGLEEVTGIIAETMRRGVPVVGFNVTFDFAILEAELARHNLPTLRQRLEGSVG 135

Query: 122 RIIDTLSIAR--RKHPSSRNDLNSLCKRYGITI 152
            I+D L + R   ++   + +L S+C  Y + +
Sbjct: 136 PIVDPLVLDRILDRYRKGKRNLASVCTAYDLPL 168


>gi|266625917|ref|ZP_06118852.1| DNA polymerase III, alpha subunit [Clostridium hathewayi DSM 13479]
 gi|288862187|gb|EFC94485.1| DNA polymerase III, alpha subunit [Clostridium hathewayi DSM 13479]
          Length = 333

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 54/85 (63%), Gaps = 9/85 (10%)

Query: 94  WIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGI 150
            +AHNA FDV FI  NAE+  +   P +P+ ++DT+++AR   P+ +R  L+++ K   I
Sbjct: 2   LVAHNASFDVSFINRNAEILGL---PFEPT-VLDTVTLARFLLPNLNRFKLDTVAKALNI 57

Query: 151 TISHRSKHGALLDSHLLSDVYIKMM 175
           ++++   H A+ D+   +++++K +
Sbjct: 58  SLANH--HRAVDDAGCTAEIFVKFV 80


>gi|302346280|ref|YP_003814578.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
 gi|302150309|gb|ADK96570.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
          Length = 896

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 62/146 (42%), Gaps = 23/146 (15%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAV---------ELLD-YSKTNRTFQVFLCPNGRK 54
           N+   +VFD ETTGL+   D IIEI A+         E LD Y +T++     L   G K
Sbjct: 510 NEEEIVVFDTETTGLNVFQDDIIEIAAIRIKGGEVVGEPLDLYIETDKPILPML---GDK 566

Query: 55  NSPEALKLHG--ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            +P     H    T E L    S S     F  +     +  + HNA +D   ++  LQR
Sbjct: 567 ENPMYAIYHEKMSTGELL----SPSDALRRFLAYVG--TSPILGHNANYDYNILDNNLQR 620

Query: 113 INKDPLDPS--RIIDTLSIARRKHPS 136
              D +     R  D+L + R   PS
Sbjct: 621 YCNDTMQAHDIRCFDSLKLIRLLAPS 646


>gi|224029725|gb|ACN33938.1| unknown [Zea mays]
          Length = 457

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 22/173 (12%)

Query: 9   KIVF-DIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPE-ALK 61
           +IVF D+ET+   +    ++E GAV      L+D S    +F   + P      P+   +
Sbjct: 14  EIVFLDVETS---TPPCVLLEFGAVVVCSRRLVDVS----SFATLVRPANLDALPDPTAR 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120
            +GIT   L D P F  +    +D  + +   W  HN   FD   I      I + P  P
Sbjct: 67  SNGITRGTLADAPPFRDVADMVYDVLHGR--VWAGHNIVHFDSMIIMDAFAEIGRPPPQP 124

Query: 121 SRIIDTLSIARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +IDTL +  +       D  L SL   +G+    + +H +L D  +  DV+
Sbjct: 125 KAMIDTLPLLTQCFGPRAGDMKLASLANYFGLG---KQRHRSLDDVKMNIDVF 174


>gi|160689340|gb|ABX45528.1| polymerase C [Bacillus mojavensis]
          Length = 259

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160
           D+GF+N   +++ +     + +IDTL + R  +P  +N  LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAFKKLLQVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFNIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+   + + +KM+   ++  I +  + NE+
Sbjct: 59  IYDTEATAYLLMKMLEDAAEKGIQYHDQLNEN 90


>gi|226947476|ref|YP_002802567.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A2 str. Kyoto]
 gi|226841365|gb|ACO84031.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A2 str. Kyoto]
          Length = 309

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +FN  N   IAHNA FD+  + + L+  N   +     I T
Sbjct: 58  PHMVQDELEFDKIWGKIKGYFN--NNLVIAHNASFDMSVLRSTLKLYN-IKMPSFEYICT 114

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G    H   H AL D+   S++ I +
Sbjct: 115 MKLSKNFYSNIDNARLNTVNNFLGYKFKH---HDALADAMACSNILINI 160


>gi|222149115|ref|YP_002550072.1| DNA polymerase III epsilon subunit-like 3-5 exonuclease
           [Agrobacterium vitis S4]
 gi|221736100|gb|ACM37063.1| DNA polymerase III epsilon subunit-like 3-5 exonuclease
           [Agrobacterium vitis S4]
          Length = 207

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 10/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ET   + +      +G +  ++  +  R  +  + P   + S   + +HGI  + 
Sbjct: 10  IAIDFETA--NEERGSACSVG-LAFVENGQVVRVEERLIRPKTMRFSSFNIAIHGIRPDH 66

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D   F  +  EF D F+   A  +AHNA FD+    A    + + P      + ++ +
Sbjct: 67  VEDAGEFPEVMDEFADDFS--GAMVVAHNAAFDLSVWRASCD-LYRQPYPSLSYVCSVKL 123

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A++  P    + LN L     ++  H   H A  D+ + +   I MM
Sbjct: 124 AQKVWPQLPSHRLNVLAAHLQLSFRH---HNAAEDASVCAQAVIAMM 167


>gi|261749409|ref|YP_003257094.1| bifunctional DNA polymerase III subunit alpha/DNA polymerase III,
           epsilon subunit [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497501|gb|ACX83951.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase
           III, epsilon subunit (dnaQ) fusion protein
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 1435

 Score = 42.4 bits (98), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 31/227 (13%)

Query: 10  IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-E 58
           ++ D ETTGL         +++N  R+++I A +L D+S     F+ F+      + P  
Sbjct: 3   LIVDTETTGLPVNYNFPISNTENWPRVVQI-AWQLHDFSGNLVEFKNFIIKPDHYDIPFN 61

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           A K+HGIT+E   K+      +  EF   F E++   I HN +FD+  I  E  R  K+ 
Sbjct: 62  AFKIHGITNEIAEKNGEDLIFVLKEFKKSF-EKSKYLIGHNLEFDIKVIECEFFR-KKEQ 119

Query: 118 LDPSR--IIDT--LSIARRKHPSSRND-----LNSL-CKRYGITISHRSKHGALLDSHLL 167
           +   R  I+DT  +S++  + P  R       L  L  K +G  +SH   H A  D    
Sbjct: 120 ISFKRKKILDTKEVSVSYCQLPGIRKKFKWPTLTELYYKLFGTKLSHS--HNAANDVKAT 177

Query: 168 SDVYIKMMVGGSQINFGFKTNED---RFFKEEKKTVPNISLLKRDKP 211
           +  +++++  G   +   K +E+   +F K  + T+ + S++  +KP
Sbjct: 178 ARCFLELLRLGIISSENLKIDENFILQFRKLHQSTISS-SMVSFNKP 223


>gi|227488565|ref|ZP_03918881.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091459|gb|EEI26771.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 449

 Score = 42.4 bits (98), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 7/147 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+ET   D  +  IIEIG  ++L+   +   T++    P       E + +HGI  E
Sbjct: 106 VAIDVETANDDWGS--IIEIGVTKVLNGLVEEQATWRCTPPPGMEDFLDENIAIHGIRPE 163

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ +PSF+  +    +F  E     ++HNA+FD   + A     +     P+    +L+
Sbjct: 164 DIEGEPSFAQRYELVKEFTGE--LPMVSHNAQFDFTAL-ARACHASHCAAAPNEFGCSLA 220

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISH 154
           ++R +    + N L  +C+  GI + H
Sbjct: 221 LSRSRDLGFATNRLPDVCRGLGIALEH 247


>gi|227543169|ref|ZP_03973218.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227180978|gb|EEI61950.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 449

 Score = 42.4 bits (98), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 7/147 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+ET   D  +  IIEIG  ++L+   +   T++    P       E + +HGI  E
Sbjct: 106 VAIDVETANDDWGS--IIEIGVTKVLNGLVEEQATWRCTPPPGMEDFLDENIAIHGIRPE 163

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ +PSF+  +    +F  E     ++HNA+FD   + A     +     P+    +L+
Sbjct: 164 DIEGEPSFAQRYELVKEFTGE--LPMVSHNAQFDFTAL-ARACHASHCAAAPNEFGCSLA 220

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISH 154
           ++R +    + N L  +C+  GI + H
Sbjct: 221 LSRSRDLGFATNRLPDVCRGLGIALEH 247


>gi|256637237|dbj|BAI03206.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640289|dbj|BAI06251.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643346|dbj|BAI09301.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646401|dbj|BAI12349.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649454|dbj|BAI15395.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256655498|dbj|BAI21425.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 337

 Score = 42.4 bits (98), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 11/110 (10%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ-------VFLCPNGRKNS 56
           K K + +  D+ETTGL S +D+I+ I  + L  Y+  ++  Q        ++    +K+ 
Sbjct: 122 KGKNKPLFVDVETTGLHS-DDQIVSICMILL--YADKSQELQKLTYKSLYYIFDPCKKSH 178

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           P A  +HG  D  L+ +  F         F  E +   +AHN  FD+ FI
Sbjct: 179 PIAEGIHGYNDWTLRHQNLFEEKMEHILSFIEESDV-IVAHNVNFDMKFI 227


>gi|258543099|ref|YP_003188532.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634177|dbj|BAI00153.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256652440|dbj|BAI18374.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-01-42C]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 11/110 (10%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ-------VFLCPNGRKNS 56
           K K + +  D+ETTGL S +D+I+ I  + L  Y+  ++  Q        ++    +K+ 
Sbjct: 128 KGKNKPLFVDVETTGLHS-DDQIVSICMILL--YADKSQELQKLTYKSLYYIFDPCKKSH 184

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           P A  +HG  D  L+ +  F         F  E +   +AHN  FD+ FI
Sbjct: 185 PIAEGIHGYNDWTLRHQNLFEEKMEHILSFIEESDV-IVAHNVNFDMKFI 233


>gi|153938164|ref|YP_001389626.1| DNA polymerase III subunit epsilon [Clostridium botulinum F str.
           Langeland]
 gi|152934060|gb|ABS39558.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum F str. Langeland]
 gi|295317718|gb|ADF98095.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum F str. 230613]
          Length = 309

 Score = 42.4 bits (98), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +FN  N   IAHNA FD+  + + L+  N   +     I T
Sbjct: 58  PHMVQDELEFDKIWGKIKGYFN--NNLVIAHNASFDMSVLRSTLKLYN-IKMPSFEYICT 114

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G    H   H AL D+   S++ I +
Sbjct: 115 MKLSKNFYSNIDNARLNTVNNFLGYKFKH---HDALADAMACSNILINI 160


>gi|298346657|ref|YP_003719344.1| DNA polymerase III subunit epsilon [Mobiluncus curtisii ATCC 43063]
 gi|298236718|gb|ADI67850.1| DNA polymerase III subunit epsilon [Mobiluncus curtisii ATCC 43063]
          Length = 240

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 29/160 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+ +  DRI  +  +  ++ + + R    ++   G    P A +++G+TDE+L+
Sbjct: 19  FDTETTGVFTSRDRIATVSLIRRINGTDSPR---YWIINPGVPMPPAAGRVNGLTDEYLQ 75

Query: 72  DKPSFSSI-FSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN------------- 114
                  +   E      E   +    +  N  FD   + AEL R N             
Sbjct: 76  ANGVDPRVGLEEVAGIVAETMRRGVPVVGFNVTFDFAILEAELARHNLPTLRQRLEGTVG 135

Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
              DPL   RI+D       ++   + +L S+C  Y + +
Sbjct: 136 PIVDPLVLDRILD-------RYRKGKRNLASVCTAYDLPL 168


>gi|168177595|ref|ZP_02612259.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum NCTC 2916]
 gi|182670548|gb|EDT82522.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum NCTC 2916]
          Length = 309

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +FN  N   IAHNA FD+  + + L+  N   +     I T
Sbjct: 58  PHMVQDELEFDKIWGKIKGYFN--NNLVIAHNASFDMSVLRSTLKLYN-IKMPSFEYICT 114

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G    H   H AL D+   S++ I +
Sbjct: 115 MKLSKNFYSNIDNARLNTVNNFLGYKFKH---HDALADAMACSNILINI 160


>gi|83943990|ref|ZP_00956447.1| exonuclease [Sulfitobacter sp. EE-36]
 gi|83845237|gb|EAP83117.1| exonuclease [Sulfitobacter sp. EE-36]
          Length = 188

 Score = 42.4 bits (98), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 12/133 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D+ET   DS +   I I  V   D   T  T+   L P     +P  + LHGI  E 
Sbjct: 12  IALDVETACGDSASICQIGIACVGFDDSILTWSTYVDPLMPF----APFNVDLHGIGPET 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII--DTL 127
           ++   SF+ I+ + W   +      +  +++FD   INA  +      L   R+   D++
Sbjct: 68  VRGAGSFAQIWPQIWPLLSRHP---MVQHSRFDEYAINAACKAQG---LPRPRLTWHDSV 121

Query: 128 SIARRKHPSSRND 140
           +IARR  P  + +
Sbjct: 122 TIARRAWPELKGN 134


>gi|322829565|gb|EFZ32905.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
           cruzi]
          Length = 1404

 Score = 42.4 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFDIE+TGL++  D IIEI A + ++ +    +F   + P  R    E + +H ITD
Sbjct: 761 RLVVFDIESTGLNTATDAIIEIAAWDPVEAT----SFSSLVDPE-RAIPQETMAIHHITD 815

Query: 68  EFLKDKPSFSSI 79
             ++  P    +
Sbjct: 816 GMVRGAPRLPEV 827


>gi|33861178|ref|NP_892739.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33639910|emb|CAE19080.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 270

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGLD   D IIE+G +     +K+  +   FL P    +S EA  ++GI+ E 
Sbjct: 50  LILDTETTGLDENKDEIIEVGCILFNVNTKSVLSQVSFLFP---VSSNEAEHVNGISAEV 106

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRIIDTLS 128
              K  +    + F    +  +   +AHN +FD   F    L ++ K  +     ++ ++
Sbjct: 107 TNIKQPWEDGLNFFLKLVDCSDLI-VAHNVEFDKKWFGKGRLPKLEKKWICS---LEDIN 162

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            + +K+  +R  +  L   + I +   S H AL D   +S+V+ K 
Sbjct: 163 WSFQKNLKNRPSVTDLALSFSIPV--WSLHRALSDCFYISEVFKKC 206


>gi|255743723|ref|ZP_05417681.1| polymerase epsilon subunit like protein [Vibrio cholera CIRS 101]
 gi|255738584|gb|EET93971.1| polymerase epsilon subunit like protein [Vibrio cholera CIRS 101]
 gi|259156231|gb|ACV96178.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ban5]
 gi|259156377|gb|ACV96322.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ind5]
          Length = 301

 Score = 42.4 bits (98), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 17/107 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64
           ++ D ETTGL + ++ IIE+G V++L      R   +     L  +  K  PE + +L G
Sbjct: 53  VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112

Query: 65  ITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE ++    D    +S  S+        +   +AHNA+FD  F  
Sbjct: 113 ITDEIVQGQRIDDAMVASWLSD--------DPLVVAHNAQFDRPFFE 151


>gi|148378258|ref|YP_001252799.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. ATCC 3502]
 gi|148287742|emb|CAL81808.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502]
          Length = 309

 Score = 42.4 bits (98), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +FN  N   IAHNA FD+  + + L+  N   +     I T
Sbjct: 58  PHMVQDELEFDKIWGKIKGYFN--NNLVIAHNASFDMSVLRSTLKLYN-IKMPSFEYICT 114

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G    H   H AL D+   S++ I +
Sbjct: 115 MKLSKNFYSNIDNARLNTVNNFLGYKFKH---HDALADAMACSNILINI 160


>gi|71414478|ref|XP_809340.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain
           CL Brener]
 gi|70873706|gb|EAN87489.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
           cruzi]
          Length = 1473

 Score = 42.4 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFDIE+TGL++  D IIEI A + ++ +    +F   + P  R    E + +H ITD
Sbjct: 830 RLVVFDIESTGLNTATDAIIEIAAWDPVEAT----SFSSLVDPE-RAIPQETMAIHHITD 884

Query: 68  EFLKDKPSFSSI 79
             ++  P    +
Sbjct: 885 GMVRGAPRLPEV 896


>gi|319892935|ref|YP_004149810.1| DNA polymerase III polC-type [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162631|gb|ADV06174.1| DNA polymerase III polC-type [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464018|gb|ADX76171.1| conserved hypothetical protein [Staphylococcus pseudintermedius
           ED99]
          Length = 186

 Score = 42.4 bits (98), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 15/158 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN---GRKNSPEALKLHGIT 66
           +  D ET   + K   I  +G V+++  ++   TF   + PN     +N    +++HGI 
Sbjct: 7   VALDFETA--NYKRTSICSVGMVKVVA-NEIVETFYTLVNPNDFFAARN----IEVHGIQ 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + ++  P+F+ ++     F  +     +AHNA FD+  ++A +Q  N     P     +
Sbjct: 60  AKDVQHSPNFAYVYPYMMQFIGD--LPVVAHNAAFDMSVLHASIQAENLIT-PPMTYFCS 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
             +A+R   + R+ L  +   + +       H AL D+
Sbjct: 117 YQLAKRTVSARRHGLKHMMSHFNLDF--HGHHDALNDA 152


>gi|158424105|ref|YP_001525397.1| putative exonuclease [Azorhizobium caulinodans ORS 571]
 gi|158330994|dbj|BAF88479.1| putative exonuclease [Azorhizobium caulinodans ORS 571]
          Length = 334

 Score = 42.4 bits (98), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 71/181 (39%), Gaps = 19/181 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR------TFQVFLCPNGRKNSPEALKLH 63
           ++ D ETTGLD   D +IE+G V    Y +         TF     P     SP   KL 
Sbjct: 83  VIVDTETTGLDHTRDEVIELGMVA-FTYREGGAIGDVVDTFSALREPT-VPISPVITKLT 140

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E +  +    SI  E    F +  +  IAHNA+FD  F    ++  +  P   S  
Sbjct: 141 GITPEMVAGQ----SIDLEAAARFIQPASIVIAHNARFDRPFCEHLVEGFDVKPWACS-- 194

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
              + +           L  L  + G+     + H A+ D H L +V    +   +   F
Sbjct: 195 --VVEVPWADFGFEGTKLGYLIGQCGM---FHNGHRAVDDCHALLEVLAAPLKEATGTAF 249

Query: 184 G 184
           G
Sbjct: 250 G 250


>gi|144898742|emb|CAM75606.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 173

 Score = 42.4 bits (98), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 11/120 (9%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKD--PL 118
           +HGIT + +KD+P F   + E  D  +   A ++ AHNA FD G + AE  R +    PL
Sbjct: 51  IHGITWDMVKDQPDFGHFWPEIRDLIDA--APFLAAHNAPFDKGVL-AECCRAHGHGAPL 107

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            P   + T+ +AR         L  +C+     ++H   H AL D+   +++ +  +  G
Sbjct: 108 TP--FVCTVRVARDTWNLRPTKLPDVCRFLAQPLNH---HDALSDAVACAEIMLAALRDG 162


>gi|315268227|gb|ADT95080.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS678]
          Length = 201

 Score = 42.4 bits (98), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 23/178 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGI 65
            ++ D ETTGL+   + ++EI  +E        RT  + +    R  +P   EA  +HGI
Sbjct: 32  AVILDTETTGLEWGCE-VVEISIIE-------ARTGLILMNTLVRPINPIPAEATAIHGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+E + D P F  I        + +    IA+N+ FD   + +     + +P   +    
Sbjct: 84  TNEMVADAPLFFDIAISVAQILSGRTV--IAYNSAFDKKMLCSSAAYSSGEPPYVNSDFQ 141

Query: 126 TLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +A  ++    N          L +  K+ GI +   + H AL D  L  ++ +KM
Sbjct: 142 CAMLAYAQYKGDWNHGHGDFKWHSLVNAAKQQGIAL-EGTAHRALYDCQLTRELILKM 198


>gi|209550157|ref|YP_002282074.1| exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209535913|gb|ACI55848.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 196

 Score = 42.4 bits (98), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 7/149 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      +G +  ++  +  R  +  + P   + S   + +HGI 
Sbjct: 1   MKTIAIDFETA--NEQRGSACSVG-LAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D P F  +  EF +  +   A  IAHNA FD     A L  + +        + +
Sbjct: 58  PEHVEDAPEFPEVMDEFHE--DISGATMIAHNAAFDFSVWRASLD-LYRQSYPELTYLCS 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISH 154
           L +A+R  P    + LN + +  G+   H
Sbjct: 115 LKMAQRIWPHFLSHRLNLIAEHLGLRFVH 143


>gi|119383203|ref|YP_914259.1| exonuclease, RNase T and DNA polymerase III [Paracoccus
           denitrificans PD1222]
 gi|119372970|gb|ABL68563.1| Exonuclease, RNase T and DNA polymerase III [Paracoccus
           denitrificans PD1222]
          Length = 303

 Score = 42.0 bits (97), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 15/113 (13%)

Query: 3   RKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-----FLCPNGRKNS 56
           R  +MR + + D ETTGLD   DR++EI A+E L      R  ++     +    GR   
Sbjct: 48  RSTEMRIVAIIDTETTGLDPTTDRLVEI-AIERLSVDARGRIIEMEHPRSWREDPGRSMP 106

Query: 57  PEALKLHGITDEFLKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           P    L G+TD  L    +F   SI ++      E +   IAHNA FD  F++
Sbjct: 107 PRLTLLTGLTDADLAGC-AFDDESIVAQ----LGEADVI-IAHNAAFDRPFVD 153


>gi|261855262|ref|YP_003262545.1| ribonuclease T [Halothiobacillus neapolitanus c2]
 gi|261835731|gb|ACX95498.1| ribonuclease T [Halothiobacillus neapolitanus c2]
          Length = 241

 Score = 42.0 bits (97), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 19/182 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-----FQVFLCP-NGRKNSPEALKLH 63
           +V D+ET GL+ + D ++E+ A  LLD     +       Q+ + P  G   +P ++K++
Sbjct: 41  VVVDVETGGLNPQTDALLEL-AAVLLDVDANGKIIPVDRIQIHVQPFEGANLNPVSMKIN 99

Query: 64  GI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQRI-- 113
           GI  D   +     +    +F+    +       + A  + HNA FD+  INA  +R   
Sbjct: 100 GIDIDHPFRCALDEAEALKQFFQPIRQRVKLNGARRAVLVGHNAAFDLAVINAACERTCN 159

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            K+P  P    DT++++          L    +  G+    +  HGAL D+   ++++ +
Sbjct: 160 KKNPFHPFSTFDTVTLSALA--VGETVLAKALEAIGLEWDSQQAHGALYDAEQTAELFCR 217

Query: 174 MM 175
           ++
Sbjct: 218 II 219


>gi|293606916|ref|ZP_06689263.1| DNA polymerase III [Achromobacter piechaudii ATCC 43553]
 gi|292814648|gb|EFF73782.1| DNA polymerase III [Achromobacter piechaudii ATCC 43553]
          Length = 208

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 66/159 (41%), Gaps = 16/159 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA---LKLHGIT 66
           IV D+ETTGL +    I+E  AV +       R +   +    R  +P      +L GIT
Sbjct: 40  IVADLETTGLSTATCEILEFAAVRVETCGTLAREYTQVV----RTAAPVPSFITRLTGIT 95

Query: 67  D-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E  +        FS F +F  +    +  HNA FD  F+ A   R      + +    
Sbjct: 96  QAEVDRHGVPVMQAFSSFLEFVEDLPVFF--HNASFDRRFLGAAADRTGMPFANATHC-- 151

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163
           TL++ARR  P    + L+ L +  G   +    H AL D
Sbjct: 152 TLALARRAWPELPSHKLDILARHVG---ASNPTHRALAD 187


>gi|325103944|ref|YP_004273598.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM
           12145]
 gi|324972792|gb|ADY51776.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM
           12145]
          Length = 315

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 16/125 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           FD+E TG++   DRI+EI  +++ +D S   KT+R       P       E   +HGI D
Sbjct: 12  FDLEATGVNLGIDRIVEISILKINVDGSEEVKTHRINPTIPIPY------EVSIIHGIYD 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQR--INKDPLDPSRII 124
           + ++++P+F  +  E  DF  +  A+   +N+ KFD+  +  E  +  +N D LD    +
Sbjct: 66  KDIENEPTFKDLAQEIADFIGD--ADLAGYNSNKFDIPMLMEEFLKAGVNFD-LDNRHFV 122

Query: 125 DTLSI 129
           D  +I
Sbjct: 123 DVQNI 127


>gi|167842269|ref|ZP_02468953.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
           thailandensis MSMB43]
          Length = 292

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 8/93 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGLD + + I+EI    +LD  +        L         +A  +HGITD  
Sbjct: 130 LFIDTETTGLDFQAE-IVEIA---ILD--RAGALLLDTLVKPAMPIPADATAIHGITDAH 183

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           +   P ++S+  +  +    +   WIAH+A FD
Sbjct: 184 VAGAPGWASVGPQVAELLAGRL--WIAHHAAFD 214


>gi|153008625|ref|YP_001369840.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC
           49188]
 gi|151560513|gb|ABS14011.1| Exonuclease RNase T and DNA polymerase III [Ochrobactrum anthropi
           ATCC 49188]
          Length = 332

 Score = 42.0 bits (97), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D ETTGL+   + IIEIGAV               TF     P+ +    +  ++ G
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPADITRITG 132

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITD+ +K +    +I  E  D    +    IAHNA FD  F+ 
Sbjct: 133 ITDDMVKGQ----TIPREKLDALIAEADIIIAHNAGFDRPFLE 171


>gi|305665063|ref|YP_003861350.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170]
 gi|88709815|gb|EAR02047.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170]
          Length = 461

 Score = 42.0 bits (97), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 13/168 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69
           + DIETTG   K ++I EI   +   Y   +  F   + P      P  +  L GI ++ 
Sbjct: 4   IVDIETTGNGIKGNKITEISIFKYDGYDIIDE-FTSLVNPECE--IPYFITGLTGIDNDL 60

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128
           ++D P    I  +  +    ++  ++AH+  FD G I  EL+ I    LD +R  + T+ 
Sbjct: 61  VRDAPKLIEISHKILEI--TKDTIFVAHSVGFDYGVIKNELKTIG---LDFTRKKLCTVR 115

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R+  P   +  L  +C    I ++ R  H A  D+H  + ++ K++
Sbjct: 116 LSRKLIPGYNSYSLGKICSALKIPLTDR--HRARGDAHATTLLFQKLL 161


>gi|256851899|ref|ZP_05557287.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN]
 gi|260661840|ref|ZP_05862750.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN]
 gi|282931860|ref|ZP_06337341.1| DNA polymerase III [Lactobacillus jensenii 208-1]
 gi|256615857|gb|EEU21046.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN]
 gi|260547309|gb|EEX23289.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN]
 gi|281304023|gb|EFA96144.1| DNA polymerase III [Lactobacillus jensenii 208-1]
          Length = 317

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 8/167 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF- 69
           + DIETTGL    DRI E+  +++ +        Q+   P   K      KL+GI +   
Sbjct: 37  MLDIETTGLSPYRDRITELAGIKVRNGKVVAEYSQLVKYPKDNKVPRFITKLNGIDEALI 96

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L +        +EF +F        + +N  FD+ FI    ++     L  +  ID L  
Sbjct: 97  LANGMPVKEAITEFRNFIG--GDVIVGYNVNFDLNFIYDLCEKFQLKKL-SNNYIDVLHF 153

Query: 130 ARR-KHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIK 173
           +R      S N L    +R GI+ S  HR    + LD+  + D+Y K
Sbjct: 154 SRVFFKKESHNRLLDCIRRLGISESEAHRGLKDS-LDTKAVFDIYRK 199


>gi|311696841|gb|ADP99714.1| exonuclease, RNase T and DNA polymerase III [marine bacterium HP15]
          Length = 242

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 25/172 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGLD+    I+ IG V   LD  +  +     + P    +   ++ +HGIT  
Sbjct: 53  VALDFETTGLDANQHSIVSIGLVPFTLDGIQLGKARHWIVRPKLPLHQ-TSITIHGITHS 111

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTL 127
            +   P  + I  + +   N +    + H    +  F +  LQ R+ +    P  +IDT+
Sbjct: 112 DIDQAPDLNDILKDLFACLNGRIP--VVHYRNIERSFFDVALQWRLGEGIRFP--LIDTM 167

Query: 128 SIARRKHPSSRND---------------LNSLCKRYGITISHRSKHGALLDS 164
           +I    HP  RN                L     RYG  + H + H AL+D+
Sbjct: 168 AIEAHLHP-DRNPSRWQQLLGKKPVSIRLADSRLRYG--LPHYAAHNALIDA 216


>gi|218461184|ref|ZP_03501275.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli Kim 5]
          Length = 240

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 7/149 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           ++ I  D ET   + +      +G +  ++  +  R  +  + P   + S   + +HGI 
Sbjct: 45  LKTIAIDFETA--NEQRGSACSVG-LAWIEEGRVIRVEERLIRPREMRFSGMNIAIHGIR 101

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D P F  +  EF D F  + A  IAHNA FD     A L  + +        + +
Sbjct: 102 PEDVEDAPEFPEVMDEFHDDF--RGATMIAHNAAFDFSVWRASLD-LYRQSYPELTYLCS 158

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISH 154
           L +A+R  P    + LN + +  G+   H
Sbjct: 159 LKMAQRIWPHFLSHRLNLIAEHLGLRFMH 187


>gi|126695985|ref|YP_001090871.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9301]
 gi|126543028|gb|ABO17270.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9301]
          Length = 259

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 22/198 (11%)

Query: 6   KMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLH 63
           K+ KI + D ETTGLD   D +IEIG + L D S      QV FL P    N+ +A  ++
Sbjct: 34  KIEKILILDTETTGLDENKDEVIEIGCI-LFDVSFKCVLSQVSFLFP---VNNNKAEYVN 89

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSR 122
           GI+ E       +    + F    +  +   +AHN +FD   F    L ++NK  +    
Sbjct: 90  GISAEVTNISQPWEDGLNFFLKLVDSSDFI-VAHNVEFDKKWFGKGRLPKLNKKWICS-- 146

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------MMV 176
            ++ ++ + +K   +R  +  L   + I + +   H AL D   +S+V+ K      +++
Sbjct: 147 -LEDINWSFQKSLKNRPSVTDLALSFSIPVWNL--HRALSDCFYISEVFKKCDNLEELLL 203

Query: 177 GGSQINFGFK---TNEDR 191
             ++  F +K   + EDR
Sbjct: 204 KATEPRFLYKALISYEDR 221


>gi|284009066|emb|CBA76036.1| ribonuclease T [Arsenophonus nasoniae]
          Length = 147

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 95  IAHNAKFDVGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
           +AHNA FD  FI A  QR N  ++P  P    DT +++       +  L   C   GI  
Sbjct: 53  VAHNANFDHSFIMAAAQRANLKRNPFHPFATFDTATLSGLVF--GQTILAKACYTAGIPF 110

Query: 153 SHRSKHGALLDS 164
             +  HGAL D+
Sbjct: 111 DGKQAHGALYDT 122


>gi|226498878|ref|NP_001148000.1| UTP-glucose-P-uridyltransferase homolog [Zea mays]
 gi|194706488|gb|ACF87328.1| unknown [Zea mays]
 gi|195615060|gb|ACG29360.1| exonuclease [Zea mays]
          Length = 499

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 21/159 (13%)

Query: 12  FDIETTGLD--SKNDRIIEIGA--------VELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           FD+ET+      +   ++E GA        VE+  Y+   R             S  +++
Sbjct: 38  FDVETSVPQRAGQGYALLEFGAILVCPRRLVEVASYATLVRPAD-----PASAVSAASVR 92

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120
            +GIT + +   P F  +    +D  N +   W  HN  +FD   I      I + P  P
Sbjct: 93  CNGITRDAVSAAPPFRDVADAVYDLLNGR--VWAGHNIVRFDSARIREAFTEIGRSPPQP 150

Query: 121 SRIIDTLSIARRKHPSSRNDLN--SLCKRYGITIS-HRS 156
             +IDTL +  ++      D+   SL   +G+    HRS
Sbjct: 151 KGMIDTLPLLTQRFGRRAGDMKMASLANYFGLGKQRHRS 189


>gi|94496850|ref|ZP_01303425.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease
           [Sphingomonas sp. SKA58]
 gi|94423863|gb|EAT08889.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease
           [Sphingomonas sp. SKA58]
          Length = 312

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 20/118 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP------EALKLH 63
           +  D+ETTGLD + DRIIE+ AV+   +    R  QV + P   +  P         KL 
Sbjct: 67  VAVDVETTGLDRETDRIIEL-AVQRFRFDALGRVIQVGV-PRVWREDPGIPIDLRITKLT 124

Query: 64  GITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           G+  + L     D+ +   I S   D         +AHNA FD  FI+  L  I   P
Sbjct: 125 GLMADDLAGQVIDETAAVEILSSA-DII-------VAHNAAFDRPFIDRRLPAIAGKP 174


>gi|78184888|ref|YP_377323.1| exonuclease [Synechococcus sp. CC9902]
 gi|78169182|gb|ABB26279.1| DNA polymerase III, epsilon subunit [Synechococcus sp. CC9902]
          Length = 307

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 10/165 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGL+ +N   +E+GA+     S+     Q FL P    N+ E   ++ I    
Sbjct: 79  LILDTETTGLEPENHCCVEVGAILFDVQSRAVLAQQSFLLP-AETNAAE--PINRIPAAV 135

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRIIDTLS 128
            +    +      F +  +  +   +AHNA FD   F   EL  + +  L    + D   
Sbjct: 136 TRLPQPWKQALLWFQNLLDAADVL-VAHNAAFDRQWFGRGELPTVTQPWL--CSMEDMRW 192

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            A R+   SR  +  L   YG+ +   + H AL D   L++V+ +
Sbjct: 193 PADRQL-RSRPSVRDLALAYGVPV--WAAHRALTDCIYLAEVFAR 234


>gi|332291057|ref|YP_004429666.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169143|gb|AEE18398.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 458

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 7/148 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG     + I EI A+   D  +    F   + P  R      + L GI +  L
Sbjct: 4   ILDIETTGGKYNEEGITEI-AIYKFDGHQVVDQFITLVNPE-RPIQAFVVGLTGINNGML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P F  I     +    +    +AHNA+FD   ++ E  R+   P + + +  ++ ++
Sbjct: 62  TDAPKFHEIAKRIIEI--TEGCIIVAHNAQFDYRILSLEFDRLGY-PYERTTLC-SVELS 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK 157
           +   P   +  L  L K  GI +S+R +
Sbjct: 118 QELLPGHDSYSLGKLTKTLGIAMSNRHR 145


>gi|197286329|ref|YP_002152201.1| plasmid-related exonuclease [Proteus mirabilis HI4320]
 gi|194683816|emb|CAR44904.1| putative plasmid-related exonuclease [Proteus mirabilis HI4320]
          Length = 301

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64
           ++ D ETTGL + ++ IIE+G V++L      R   +     L  +  K  PE + +L G
Sbjct: 53  VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIIDLISLYEDPGKPIPELITELTG 112

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           ITD+ ++ +    S+ +     +   +   +AHNA+FD  F
Sbjct: 113 ITDDMVQGQHIDDSLVAS----WLSDDPLVVAHNAQFDRPF 149


>gi|290991983|ref|XP_002678614.1| predicted protein [Naegleria gruberi]
 gi|284092227|gb|EFC45870.1| predicted protein [Naegleria gruberi]
          Length = 302

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 13/135 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIE T  ++   R+IE+    ++D +  + +F   +  +         ++  IT   
Sbjct: 82  VVLDIEGTSTNTSYCRMIEVACARIVDGTSIS-SFTSLVNADIDYIPEPVQEITKITKAM 140

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSRIID- 125
           +   P    + S+ ++F + Q +  + HN +FD   I  E  R   IN +   P   I  
Sbjct: 141 IDLSPPPQIVLSQLYNFLSSQPSLVVGHNVRFDASVIYNEFVRYKIINNEVHKPDDFISH 200

Query: 126 --------TLSIARR 132
                   TL +ARR
Sbjct: 201 SLFTNTLCTLKLARR 215


>gi|209546045|ref|YP_002277935.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538902|gb|ACI58835.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 326

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 16/107 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+ ++D IIEIGAV     D         ++  L    R    E  +L GI
Sbjct: 75  VILDTETTGLNHRSDEIIEIGAVAFTFDDDGGIGDIVGIYGGLQQPSRPIPAEITRLTGI 134

Query: 66  TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           TD  ++    D  S S++         E     IAHNA FD  F  A
Sbjct: 135 TDAMVEGQVIDMWSLSALI--------EPADLIIAHNAGFDRPFCEA 173


>gi|163754237|ref|ZP_02161360.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
 gi|161326451|gb|EDP97777.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
          Length = 457

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 14/154 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETTG   ++++I EI   +  D       F   + PN    +     L GI +  +
Sbjct: 9   IIDVETTG---RSNKITEISIFKF-DGETIVDEFTSLVNPNVLIPT-HITALTGIDNAMV 63

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLSI 129
            D P+F+ I  E       +++ ++AHN  FD   I  E + I+   LD  R  + T+ +
Sbjct: 64  ADAPTFAEIAKEVLSI--TKDSIFVAHNVNFDYNVIRNEFKAID---LDFRRKKLCTVRL 118

Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGA 160
           +R   P  ++  L  LCK   I IS  HR++  A
Sbjct: 119 SRALIPGFKSYSLGKLCKSLNIHISDRHRARGDA 152


>gi|260881524|ref|ZP_05404631.2| exonuclease [Mitsuokella multacida DSM 20544]
 gi|260848674|gb|EEX68681.1| exonuclease [Mitsuokella multacida DSM 20544]
          Length = 196

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 12/133 (9%)

Query: 9   KIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            I F+  T   DS     ++ I A  L+D      ++   + P   + S    K+HG+T+
Sbjct: 6   AIDFETATGARDSACSVAVVTIRAGALVD------SYYTLIQPPANRYSYFNTKIHGLTE 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDT 126
               +   F+ I+ E       Q    +AHNAKFD+  + + L R       P+    DT
Sbjct: 60  ADTANAADFAGIWPELEAKLEGQLV--VAHNAKFDMSVLRSCLARYGLQA--PAFSYCDT 115

Query: 127 LSIARRKHPSSRN 139
           ++IARR  P+  N
Sbjct: 116 VAIARRAWPNLAN 128


>gi|31747840|gb|AAO38419.1| Lfe210p1 [Leptospirillum ferrooxidans]
          Length = 111

 Score = 42.0 bits (97), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 10/118 (8%)

Query: 14  IETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71
           +ET+GL      R++E  A+ + D  K    F+     +G+   PE + +++GIT E   
Sbjct: 1   METSGLLRDPEARVVEW-ALSVWDGDK--EIFRGGSLVSGKGPIPEEVSRINGITTEMTV 57

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTLS 128
             P+F  ++ E+ +    + A  +AHN  FD+G IN +L R  + PL +P   ID+L 
Sbjct: 58  GCPTFRELYGEWKEHL--KKAIVVAHNLSFDLGMINRDLIRQGEIPLGNPG--IDSLG 111


>gi|149190662|ref|ZP_01868930.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
 gi|148835545|gb|EDL52514.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
          Length = 176

 Score = 42.0 bits (97), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 23/178 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL-----KLHGI 65
            D ETT LD     I+ I A +++D    T+  F+V      R ++P++L     K+H I
Sbjct: 1   MDCETTSLDPSVAEIVTIAATKIIDNRIITSDPFEV------RLSAPKSLGEDSVKIHHI 54

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + LK   S     S   +F    N   + ++ ++D   ++   ++    PL P+ +I+
Sbjct: 55  THDELKHGISEKQAMSALLNFIG--NRPLVGYHIRYDKKILDRAAKKHLGFPL-PNELIE 111

Query: 126 TLSIARRKH----PSSRNDLN--SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              I   K     P+   DL+  ++C+   I   H  KH AL D+   + VY+K+  G
Sbjct: 112 VSQIYNDKLLKLLPNGYFDLSLEAICRHLQIPNYH--KHDALEDAKAAAMVYLKLTRG 167


>gi|325298421|ref|YP_004258338.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
 gi|324317974|gb|ADY35865.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
          Length = 258

 Score = 42.0 bits (97), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 16/130 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64
           + FD+ETTG +   DRI+EI  +++     + SKT R        N   + PE +  +HG
Sbjct: 10  VFFDLETTGTNINTDRIVEICYLKIYPNGNEESKTMRI-------NPEMHIPETSTAIHG 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSR 122
           I DE + D P+F  I  E       + A+    N+ +FDV  +  E  R   D  L   +
Sbjct: 63  IHDEDVADCPTFKQIAKELAKSI--EGADIAGFNSNRFDVPVLVEEFLRAGIDIDLSKRK 120

Query: 123 IIDTLSIARR 132
            ID   I  +
Sbjct: 121 FIDVQVIYHK 130


>gi|260221319|emb|CBA29763.1| hypothetical protein Csp_A13780 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 307

 Score = 42.0 bits (97), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 20/163 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN---RTFQVF--LCPNGRKNSPEALKLHG 64
           +V D ETTGLD   ++IIE+  + +   + T       QV+  L   G+   PE + + G
Sbjct: 40  LVLDTETTGLDQAKEKIIELALLRVDIDTATGLPVGPVQVYDGLEDPGKAIPPEVVAITG 99

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI- 123
           I D  ++ +    +  +E     +      IAHNA FD  F+ + L      P   S   
Sbjct: 100 IQDADVQGQALDEARVAELMQGVDVV----IAHNAGFDRPFVESRLPAFAALPWACSFAD 155

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDSH 165
           +D  S+ R     S   L SL +  G+   +HR++    +D H
Sbjct: 156 LDWKSLGR-----SSAKLESLAQELGLFYDAHRAE----MDCH 189


>gi|15451562|gb|AAK98686.1|AC021893_20 Putative exonuclease [Oryza sativa Japonica Group]
 gi|31432000|gb|AAP53699.1| exonuclease family protein, expressed [Oryza sativa Japonica Group]
 gi|222612804|gb|EEE50936.1| hypothetical protein OsJ_31475 [Oryza sativa Japonica Group]
          Length = 436

 Score = 42.0 bits (97), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 12  FDIETTGLDSKNDR--IIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           FD+ET+      +R  ++E G++ L     +    F   + P+      EAL+  GIT  
Sbjct: 26  FDVETSMPWGPRERRTLLEFGSIFLCPRLVEVAEPFVTLVRPSDLGVVTEALERKGITRG 85

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
            L+D P F  +     +  + +   W  HN   FD   I      I + P +P  +IDTL
Sbjct: 86  ALEDAPPFCDVADNIHNVLHGRI--WAGHNIISFDSEIIREAFAEIGRSPPEPKGMIDTL 143

Query: 128 SI 129
            +
Sbjct: 144 PL 145


>gi|254430147|ref|ZP_05043850.1| exonuclease [Cyanobium sp. PCC 7001]
 gi|197624600|gb|EDY37159.1| exonuclease [Cyanobium sp. PCC 7001]
          Length = 292

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 24/169 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGLD + D  +E+GA+     S+   +   FL P  R+N  EA  ++GI    
Sbjct: 66  LILDTETTGLDPEQDHCLEVGAILFHVPSRAVLSQISFLLPV-RENPAEA--INGIAAAT 122

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRIIDTLS 128
            +    +    S F     + +A  +AHNA FD   F   EL  +       +  I ++ 
Sbjct: 123 TRLPQPWRQGLSCFEAMAADADAV-LAHNAAFDRQWFGRGELPALG------APWICSME 175

Query: 129 IAR-------RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             R       R +PS R+    L   YG+ +   + H AL D   L+ V
Sbjct: 176 DIRWPAERGLRPNPSVRD----LALAYGVPV--WAAHRALTDCIYLAQV 218


>gi|299132474|ref|ZP_07025669.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2]
 gi|298592611|gb|EFI52811.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2]
          Length = 297

 Score = 42.0 bits (97), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 48/107 (44%), Gaps = 18/107 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP------EALKLH 63
           ++ D+ETTGLD   D IIE+  V    Y+      +V L P  R   P      E   L 
Sbjct: 44  LMVDVETTGLDPDRDEIIELAMVP-FRYALDGTVVEV-LEPFDRLREPSKPISSEITVLT 101

Query: 64  GITDEFLKDK---PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           GITD  +  K   PS  ++F+          A  IAHNA FD  F+ 
Sbjct: 102 GITDAMVAGKSIDPSEVTMFA-------APAAVVIAHNAAFDRRFLE 141


>gi|156974590|ref|YP_001445497.1| hypothetical protein VIBHAR_02308 [Vibrio harveyi ATCC BAA-1116]
 gi|156526184|gb|ABU71270.1| hypothetical protein VIBHAR_02308 [Vibrio harveyi ATCC BAA-1116]
          Length = 217

 Score = 42.0 bits (97), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 8/104 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+ D ETTGL S  + IIE  A+     + + +     L         EA  +HGITDE 
Sbjct: 20  IIIDTETTGLGSDTE-IIEFTAI----CADSGKVIVNELVKPTCSIPAEATAIHGITDED 74

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQR 112
           +KD P F  +FS +  F    N    I +N+ FD   I   L +
Sbjct: 75  VKDAPDFHLVFSNY--FLPLLNGRPIIIYNSDFDTRLIIQSLDK 116


>gi|150025957|ref|YP_001296783.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86]
 gi|149772498|emb|CAL43981.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 453

 Score = 42.0 bits (97), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 9/160 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG     + I EI A+   D  +    F   + P      P  +KL GI +  L
Sbjct: 4   ILDIETTGGQFNEEGITEI-AIYKFDGHQIVDQFISLVNPE-IPIQPFVVKLTGINNAML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P F  +     +    ++   +AHN  FD   +  E  R+  D    ++ + T+ +A
Sbjct: 62  VSAPKFHEVAKRIVEI--TKDCIIVAHNTVFDYRILRTEFSRLGYD--FQAKTLCTVELA 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167
           +   P   +  L  L +  GI I+  HR++  AL    L 
Sbjct: 118 KILIPEQPSYSLGKLVRALGIPITNRHRAEGDALATVKLF 157


>gi|289550389|ref|YP_003471293.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01]
 gi|315660145|ref|ZP_07913002.1| exonuclease [Staphylococcus lugdunensis M23590]
 gi|289179921|gb|ADC87166.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01]
 gi|315494826|gb|EFU83164.1| exonuclease [Staphylococcus lugdunensis M23590]
          Length = 186

 Score = 42.0 bits (97), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 9/166 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   + K   I  +G V+++D ++   +F   + P     S + + +HGI  E 
Sbjct: 9   VALDFETA--NGKRTSICSVGMVKVID-NQITESFHTLINPQDYF-SKKNINVHGINPED 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P F  +F     F    N   +AHNA FD+  ++  L++      D +    +  +
Sbjct: 65  VIHAPQFDYVFPYMLQFI--ANLPVVAHNAAFDMNVLHQSLKQAGIITPDLTYFC-SYQL 121

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A+R   + R  L  +   Y +       H AL D+   + +  +++
Sbjct: 122 AKRTIDAPRYGLKHMMDFYNLDF--HGHHDALNDAKACAMITFRLL 165


>gi|315037938|ref|YP_004031506.1| DNA polymerase III alpha chain [Lactobacillus amylovorus GRL 1112]
 gi|312276071|gb|ADQ58711.1| DNA polymerase III alpha chain [Lactobacillus amylovorus GRL 1112]
          Length = 177

 Score = 42.0 bits (97), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++H IT E +K+ P+ + ++ +    + +      AHNA+FD   +   L R N    +
Sbjct: 50  IQVHQITAEDVKNAPTMAEVWPKIKGLY-QPGMLVAAHNARFDTNVMRQSLARYNIS--E 106

Query: 120 PSR-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P   +IDTL+ ++R  P   N  L+++     + + H   H AL DS   + + I
Sbjct: 107 PHYLVIDTLTTSKRFEPELPNHKLDTVSDALDVELWHH--HNALSDSEACAGILI 159


>gi|153870628|ref|ZP_01999989.1| ribonuclease T [Beggiatoa sp. PS]
 gi|152072905|gb|EDN70010.1| ribonuclease T [Beggiatoa sp. PS]
          Length = 212

 Score = 42.0 bits (97), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 18/181 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D+ET G + + D ++EI AV L        + ++T    + P  G     +AL+  G
Sbjct: 19  VVVDVETAGFNPERDALLEIAAVILQINEEGLWQPHQTHFSHIVPFEGANLDKQALEFIG 78

Query: 65  ITDEFL------KDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114
           + D F       ++     ++F         +    A  + HN  FD+ FINA  +R   
Sbjct: 79  V-DPFHPFRFAKQEAEGLETVFKPIRKAVKIYGCTRAVLVGHNPSFDLSFINAASERTGV 137

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           K P       DT ++A   +   +  L    +  G   +    H A+ D+   +D++  +
Sbjct: 138 KSPFHRFSTFDTATLAGLVY--GQTVLARAVQAAGFEWNTSEAHAAIYDAQRTADLFCTI 195

Query: 175 M 175
           +
Sbjct: 196 V 196


>gi|328958152|ref|YP_004375538.1| DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4]
 gi|328674476|gb|AEB30522.1| DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4]
          Length = 177

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGIT++ ++  PSF  ++ +   FF E N   +AHN  FD G +   L         
Sbjct: 50  VQIHGITEDDVQTAPSFPEVWEKIKPFFKE-NKLIVAHNLPFDRGVLQGCLDYYQLQQPH 108

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +    S  +       + LN++C   GI +   + H AL DS+  + + + +
Sbjct: 109 FQTLCTVQSSRKLITEIPNHKLNTVCDHLGIRLD--NHHNALEDSNACAAILLYL 161


>gi|242039735|ref|XP_002467262.1| hypothetical protein SORBIDRAFT_01g022250 [Sorghum bicolor]
 gi|241921116|gb|EER94260.1| hypothetical protein SORBIDRAFT_01g022250 [Sorghum bicolor]
          Length = 505

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 21/159 (13%)

Query: 12  FDIETTGLD--SKNDRIIEIGA--------VELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           FD+ET+      +   ++E GA        VE+  Y+   R             S  +++
Sbjct: 44  FDVETSVPQRAGQGYALLEFGAILVCPRRLVEVASYATLVRPADPV-----SAVSAASVR 98

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120
            +GIT + +   P F  +    +D  N +   W  HN  +FD   I      I + P  P
Sbjct: 99  CNGITRDAVSGAPPFRDVADAVYDLLNGR--VWAGHNIVRFDSARIREAFTEIGRSPPQP 156

Query: 121 SRIIDTLSIARRKHPSSRNDLN--SLCKRYGITIS-HRS 156
             +IDTL +  ++      D+   SL   +G+    HRS
Sbjct: 157 KGMIDTLPLLTQRFGRRAGDMKMASLANYFGLGKQRHRS 195


>gi|195657335|gb|ACG48135.1| hypothetical protein [Zea mays]
          Length = 458

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 14/169 (8%)

Query: 9   KIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPE-ALKLHGI 65
           +IVF D+ET+   +    ++E GAV +         +F   + P      P+   + +GI
Sbjct: 14  EIVFLDVETS---TPPCVLLEFGAVVVCSRRLVEVSSFATLVRPANLDALPDPTARSNGI 70

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRII 124
           T   L D P F  +    +D  + +   W  HN   FD   I      I + P  P  +I
Sbjct: 71  TRGTLADAPPFGDVADMVYDVLHGR--VWAGHNIVHFDSMIIMDAFAEIGRPPPQPKAMI 128

Query: 125 DTLSIARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           DTL +  +       D  L SL   +G+    + +H +L D  +  DV+
Sbjct: 129 DTLPLLTQCFGPRAGDMKLASLANYFGLG---KQRHRSLDDVKMNIDVF 174


>gi|224372220|ref|YP_002606592.1| exonuclease family [Nautilia profundicola AmH]
 gi|223589909|gb|ACM93645.1| exonuclease family [Nautilia profundicola AmH]
          Length = 271

 Score = 41.6 bits (96), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 6/113 (5%)

Query: 6   KMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K++K+ VFD ETT +      II    V     S        FL P   K S EA ++H 
Sbjct: 100 KIQKVGVFDTETTDIYG---YIISYAVVIQDMQSMDTEEIYDFLNPKA-KISEEAYEVHK 155

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           I  E ++ KP+F+    EF   F+  +   + HN  +D G +  EL+R    P
Sbjct: 156 IKQEDIEHKPTFAEKKDEFLQIFDNLDM-VVGHNVLYDFGVLKRELERAEHFP 207


>gi|309779749|ref|ZP_07674506.1| DNA polymerase III [Ralstonia sp. 5_7_47FAA]
 gi|308921488|gb|EFP67128.1| DNA polymerase III [Ralstonia sp. 5_7_47FAA]
          Length = 216

 Score = 41.6 bits (96), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+ + D I+ IGAV ++ +   T+   ++ + P G +  PE++ +H + + 
Sbjct: 39  VALDCETTGLNVRTDEIVSIGAVRIVGNRILTSEPLELLIRPQG-EMRPESICVHRLRNR 97

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            L    S          F   +    + +  +FDV  +N
Sbjct: 98  DLDSGVSIEQAIHALLHFIGSR--PLVGYYLEFDVAMLN 134


>gi|77543206|gb|ABA87018.1| hypothetical protein [Vibrio cholerae]
 gi|259156499|gb|ACV96443.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Mex1]
          Length = 301

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 9/103 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64
           ++ D ETTGL + ++ IIE+G V++L      R   +     L  +  K  PE + +L G
Sbjct: 53  VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELITELTG 112

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITD+ ++ +    S+ +     +   +   +AHNA+FD  F  
Sbjct: 113 ITDDMVRGQRIDDSLVAS----WLSDDPLVVAHNAQFDRPFFE 151


>gi|269837031|ref|YP_003319259.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786294|gb|ACZ38437.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
          Length = 966

 Score = 41.6 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 19/169 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66
           +  D+E TG+D + D IIEI A++  +    +R ++  + P G    P       L GI 
Sbjct: 6   VALDLEATGMDPERDEIIEIAAIKFRNDRVLDR-WESLVRPRG----PIPFNITSLTGIG 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + ++  P F  +     DF   +N   +  + +FD+  +     R+ ++PL      DT
Sbjct: 61  AKDVRRAPIFPVVAPRLRDFV--RNHPIVGQSPEFDIQMLAGAGLRL-QNPL-----YDT 112

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +A    P     +L ++  R G+++ H  +H A+ D      V++ +
Sbjct: 113 FQLATILIPDLPAYNLATIAARLGVSVPH--QHRAMADVETTMAVFLGL 159


>gi|227502443|ref|ZP_03932492.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49725]
 gi|306835006|ref|ZP_07468054.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
 gi|227076812|gb|EEI14775.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49725]
 gi|304569114|gb|EFM44631.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
          Length = 479

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +   ++TTG+     RI+ I AV   +     + F   L P+          LHG+T   
Sbjct: 114 VALTLQTTGIHPSTGRIVTIDAVAFDNAGDIGQRFHAVLKPDIDAGP---HHLHGLTVAD 170

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           ++  P+FS I        + +    + H+  +  GFI AE +R
Sbjct: 171 IEQAPAFSRILKSLDKLIDGRT--LVVHDIPYTWGFIVAEARR 211


>gi|163840229|ref|YP_001624634.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC
           33209]
 gi|162953705|gb|ABY23220.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC
           33209]
          Length = 327

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 7/121 (5%)

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P  + +HG+T + +  +P F  +F E   F  +     +AHNA FD G + +  Q ++  
Sbjct: 52  PRNIAIHGVTPQQVASQPRFDRVFDEVQRFIGQDI--LVAHNAAFDTGVMRSA-QEVSAK 108

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMM 175
                    T+ +ARR +      L  + +  G+  I+H   H A+ D+   + + I ++
Sbjct: 109 SGPRYDYACTVMLARRSYSLPSYSLPFVAEAAGVPLINH---HDAVEDARACAGIMIDIV 165

Query: 176 V 176
            
Sbjct: 166 A 166


>gi|304383875|ref|ZP_07366332.1| exonuclease [Prevotella marshii DSM 16973]
 gi|304334953|gb|EFM01226.1| exonuclease [Prevotella marshii DSM 16973]
          Length = 163

 Score = 41.6 bits (96), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 9/164 (5%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D ET   +++   +  +G V ++       TF   + P     S   +++HG+T      
Sbjct: 8   DFETA--NNERSSVCSVGLV-IVRNGAVADTFYSLIQPEPNYYSYWCVRVHGLTHADTDA 64

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P FS ++ +       +    +AHN++FD   + A  +    D  D S   DTL+ ARR
Sbjct: 65  APVFSEVWKQIEPLI--EGLPLVAHNSRFDESCLRAVFRVYQMDYPDYS-FFDTLTAARR 121

Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             P  S + L+++    G  +  ++ H AL D+   + +  K++
Sbjct: 122 TFPHLSNHQLHTVATECGYDL--KNHHHALADAEACAWIARKIL 163


>gi|303229201|ref|ZP_07316002.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-134-V-Col7a]
 gi|303230531|ref|ZP_07317286.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514814|gb|EFL56801.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302516214|gb|EFL58155.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 209

 Score = 41.6 bits (96), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWD 85
           +E G +    YS     F  F         PE +++HGI   E L +K      F + W 
Sbjct: 27  VENGQITKKAYSLIKPPFMSF--------DPECIEIHGIEPKEVLHEK-----TFDQLWP 73

Query: 86  FFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-L 141
              E + +    IAHNAKFD+  + A L   N  P        T+ I+R   P   N  L
Sbjct: 74  AIYENHLKGKIMIAHNAKFDMNVLRATLDYYNI-PWPELDYACTVKISRAVWPDLVNHKL 132

Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           N++    G+   H   H AL D+   + V I+
Sbjct: 133 NTMAAYLGVEFKH---HYALDDAETCAKVAIE 161


>gi|270004806|gb|EFA01254.1| three prime repair exonuclease [Tribolium castaneum]
          Length = 232

 Score = 41.6 bits (96), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 18/120 (15%)

Query: 10  IVFDIETTGL---DSKNDRIIEIGAVELLDYSKTNRTFQ----------VFLCPN-GRKN 55
           + FD+ETTGL   +    RI E  AV +       +T Q          + LC N  R  
Sbjct: 8   VFFDLETTGLPKFEENRTRITEFCAVAVRADHIGLQTAQKCKLPRVQSKLSLCFNPARAI 67

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEF---WDFFNEQNAEWIAHNA-KFDVGFINAELQ 111
            P+A KL G+++E L+ +  FSS        W   NE+    +AHN  +FD   + AE++
Sbjct: 68  CPQATKLTGLSNELLEHQAHFSSQTLNVIKNWLDVNEKPICLVAHNGNEFDFPILRAEIE 127


>gi|227832962|ref|YP_002834669.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453978|gb|ACP32731.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 205

 Score = 41.6 bits (96), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 24/176 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +  D+ETT LD +  +I+ IG V +    +D S    T        G + + +A  +H +
Sbjct: 26  LAVDMETTSLDPRRGKIVSIGWVPVNGGVIDLSGAGYTVV-----RGAQVAEDA-HVHLL 79

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRII 124
           T E +       S  ++       Q    +AH A  +VGFI A  + +  + P     ++
Sbjct: 80  TQEVIDAGEELDSAVAQLRQAL--QGRALLAHFAALEVGFIEAASREVFGQRPR--LSVV 135

Query: 125 DTLSIARR------KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           DT ++ RR       +P   +  L  +  RYG  +     H AL D+   +++Y+ 
Sbjct: 136 DTFALERRHMERMGTYPRGEDLRLPRVRARYG--LPRYGSHNALSDALACAELYLA 189


>gi|15894025|ref|NP_347374.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum ATCC
           824]
 gi|15023620|gb|AAK78714.1|AE007589_2 DNA polymerase III epsilon subunit (3'-5' exonuclease) containing
           BRCT domain [Clostridium acetobutylicum ATCC 824]
          Length = 306

 Score = 41.6 bits (96), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 14/171 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+    D ET   + K +    IG V + D     ++  + + P   +  P  + +HGI 
Sbjct: 1   MKFTAIDFETA--NEKRNSPCSIGIVVVKDGHVVEKSHHL-IRPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124
              ++ +P F  ++ +   +F++     IAHNA FD+  +  +AEL  I    L     I
Sbjct: 58  PAMVEKEPEFDKVWEKIKHYFDDTLV--IAHNASFDISVLRKSAELYNIE---LPEFNYI 112

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            T+ +AR  +    N  LN++    G    H   H AL D+   S++ + +
Sbjct: 113 CTMKLARNFYKGIENAKLNTVNNFLGYEFRH---HDALYDALACSNIMLSI 160


>gi|307546031|ref|YP_003898510.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
 gi|307218055|emb|CBV43325.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
          Length = 240

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 21/170 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTGLD++   I+ IG V         R  + ++    R    E++  H IT   
Sbjct: 51  VALDMETTGLDARRHAIVSIGVVPFTLGRIALRERRYWIVRPQRTLHAESVTFHHITHTD 110

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTLS 128
           ++  P F  I  +  +    +    + H    +  F++  ++ R+ +  + P  +IDT++
Sbjct: 111 IEQAPEFGEILGDLLEVLAGRLV--VVHYRHIERLFLDDSVKARLGEGLMFP--MIDTMA 166

Query: 129 IARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +  R H              P +   L     RYG+ +     H AL D+
Sbjct: 167 VEARFHRQSWLARFKRWIGRPPASIRLYDSRTRYGLPLY--QGHHALTDA 214


>gi|116070417|ref|ZP_01467686.1| Exonuclease [Synechococcus sp. BL107]
 gi|116065822|gb|EAU71579.1| Exonuclease [Synechococcus sp. BL107]
          Length = 285

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 10/165 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGL+ +N   +E+GA+     S+     Q FL P    N+ E   ++ I    
Sbjct: 57  LIIDTETTGLEPENHCCVEVGAILFDVQSRAVLAQQSFLLP-AETNAAE--PINRIPAAV 113

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRIIDTLS 128
            +    +      F +  +  +   +AHNA FD   F   EL  + +  L    + D   
Sbjct: 114 TRLSQPWKEALLWFQNLLDAADVL-VAHNAAFDRQWFGRGELPAVTQPWL--CSMEDMRW 170

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            A R+   SR  +  L   YG+ +   + H AL D   L++V+ +
Sbjct: 171 PADRQL-RSRPSVRDLALAYGVPV--WAAHRALTDCIYLAEVFAR 212


>gi|283769033|ref|ZP_06341939.1| exonuclease [Bulleidia extructa W1219]
 gi|283104390|gb|EFC05767.1| exonuclease [Bulleidia extructa W1219]
          Length = 186

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 20/178 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--KLHGI 65
           R +  D+ET   D ++  +  IG + +L+       F   + P    N  E    K+HGI
Sbjct: 3   RVVAVDVETASSDHRS--MCAIG-LSVLENGVLEEAFYSLIKPAANANHFEYFNTKVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRII 124
             + ++D P+   ++         ++   +AHNA FDV  I N  L      P+      
Sbjct: 60  HPKDVQDAPTLPEVYPTIKSLL--ESGIVVAHNAVFDVSVIKNCCLN--TGCPVPKVTYF 115

Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           D++ ++RR  P   N  L+++ +   I + H          H  SD Y  + +  + +
Sbjct: 116 DSVPLSRRAFPLLVNHKLDTVARYLKIPLDHH---------HAGSDAYACLAIVAAAM 164


>gi|229817290|ref|ZP_04447572.1| hypothetical protein BIFANG_02550 [Bifidobacterium angulatum DSM
           20098]
 gi|229785079|gb|EEP21193.1| hypothetical protein BIFANG_02550 [Bifidobacterium angulatum DSM
           20098]
          Length = 463

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 76/197 (38%), Gaps = 44/197 (22%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLD-------------------------YSKTNRTFQV 46
            DIETTG D   D II++G  E ++                         Y ++  +F V
Sbjct: 235 IDIETTGTDPARDYIIDVG-FEYMNMMSARPADFPSEYTYEQSSYTPGCAYGQSRLSFGV 293

Query: 47  FLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD-----FFNEQNAEWIAHNAKF 101
               N +  +P   K  GI D   +   S   IF E+ +             ++AHNA F
Sbjct: 294 TDA-NAKVGNPFIAKFTGI-DVRERGAASGCRIFDEWPEAQLGLLQRLVQQPYVAHNATF 351

Query: 102 DVGFI------NAELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG-I 150
           + GF        AE  R       D +  SR  D  S+   +HP   N L++  KR G +
Sbjct: 352 EHGFFMLNVTGYAEAYRAGGIVIVDTMPMSRQWDPGSVETPEHPYGDNTLDAYAKRQGAL 411

Query: 151 TISHRSKHGALLDSHLL 167
                 +H  L D+H++
Sbjct: 412 QADQNERHLGLEDAHIM 428


>gi|218130099|ref|ZP_03458903.1| hypothetical protein BACEGG_01686 [Bacteroides eggerthii DSM 20697]
 gi|317476592|ref|ZP_07935837.1| exonuclease [Bacteroides eggerthii 1_2_48FAA]
 gi|217987603|gb|EEC53931.1| hypothetical protein BACEGG_01686 [Bacteroides eggerthii DSM 20697]
 gi|316907188|gb|EFV28897.1| exonuclease [Bacteroides eggerthii 1_2_48FAA]
          Length = 256

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 14/118 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + FD+ETTG +  +DRI+EI  +++     + SKT R       P       EA  +HGI
Sbjct: 10  VFFDLETTGTNINSDRIVEICYLKVYPNGNEESKTMRINPEMHIP------AEASAVHGI 63

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122
            DE + D P+F  +     +  + +  +    N+ +FD+  +  E  R + D +D SR
Sbjct: 64  YDEDVADCPTFKEVARSIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRADVD-IDMSR 118


>gi|187777136|ref|ZP_02993609.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC
           15579]
 gi|187774064|gb|EDU37866.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC
           15579]
          Length = 309

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIIEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +FN  N   IAHNA FD+  + + L+  N   +     I T
Sbjct: 58  PHMVQDELEFDKIWGKIKGYFN--NNLVIAHNASFDMSVLRSTLELYN-IKMPSFEYICT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G    H   H AL D+   S++ + +
Sbjct: 115 MKLSKNFYSNIDNAKLNTVNNFLGYKFQH---HDALADAMACSNILLNI 160


>gi|241662069|ref|YP_002980429.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12D]
 gi|240864096|gb|ACS61757.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
           12D]
          Length = 216

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+ + D I+ IGAV ++ +   T+   ++ + P G +  PE++ +H + + 
Sbjct: 39  VALDCETTGLNVRTDEIVSIGAVRIVGNRILTSERMELLIRPQG-EMRPESICVHRLRNR 97

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            L    S          F   +    + +  +FDV  +N
Sbjct: 98  DLDSGVSIEQAIHALLHFIGSR--PLVGYYLEFDVAMLN 134


>gi|260773955|ref|ZP_05882870.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260610916|gb|EEX36120.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 236

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 77/169 (45%), Gaps = 12/169 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD ET+G++++ D I+ +G V++ LD      + ++F+C + +  + ++ +++ IT +
Sbjct: 53  VAFDFETSGVNARQDHILSLGWVDMTLDEIDLAASEELFVC-HPQFITAQSAQINHITPK 111

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L    +          F        + H +  +  F+   LQ+       P   IDTL 
Sbjct: 112 ILSAGLTLDEAMDRL--FIRLAGKVALVHGSCIERAFVERYLQQRYGLEQFPCVWIDTLQ 169

Query: 129 IARRKHPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           I ++     + D      L+ +  RYG  +   S H A +D+   ++++
Sbjct: 170 IEKQMTYQGQTDIQRSFQLHDVRARYG--LPQYSAHSAAMDALATAELF 216


>gi|148272897|ref|YP_001222458.1| DNA polymerase III subunit epsilon [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830827|emb|CAN01769.1| putative DNA polymerase III , epsilon subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 233

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 10/147 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D +  RI+    + +LD          +L   G +    A  +HG+T E  +
Sbjct: 12  FDLETTGVDVETARIVT-ACIVVLDAQGEVLERHDWLADPGVEIPAGAAAIHGVTTERAR 70

Query: 72  DKPSFS-----SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
                +      I +     F    A  + +NA +D+  +N E  R   +PL D   +ID
Sbjct: 71  AAGRDAAVVVLEIVTTIRAMFARGLA-LVVYNAPYDLTLLNREAVRHGVEPLRDTGPVID 129

Query: 126 TLSI--ARRKHPSSRNDLNSLCKRYGI 150
            L I  A   +   +  L+   + YG+
Sbjct: 130 PLVIDKAVDTYRRGKRTLSVAAEHYGV 156


>gi|262194028|ref|YP_003265237.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077375|gb|ACY13344.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 15/154 (9%)

Query: 7   MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNS-PEALK 61
           M+ +VF D ETTGLD +   I+EI A+ +  + +T    R   + + P   +++ PEAL+
Sbjct: 1   MQPLVFIDCETTGLDPERHEILEIAAIRV--HPQTLDEERELVLRVRPERLEDADPEALE 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LD 119
           ++G       D  S     +E       + A    HN  FD  F+      +   P  LD
Sbjct: 59  VNGYRRRAWADAVSLGDAMAELAPML--EGAVLAGHNVAFDRRFLEVAWDCVGHRPETLD 116

Query: 120 PSRIIDTLSIARRKHPSSRND---LNSLCKRYGI 150
               +DT ++A     +   D   L  +C   G+
Sbjct: 117 -HHALDTAALAFPLLMAGEIDSLSLTPVCAHLGV 149


>gi|156974738|ref|YP_001445645.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116]
 gi|156526332|gb|ABU71418.1| hypothetical protein VIBHAR_02456 [Vibrio harveyi ATCC BAA-1116]
          Length = 249

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+++ D I+ IG V   L   + + +    + PN R+ + E++ +HGITD 
Sbjct: 60  VSVDFETTGLNAEQDAILTIGLVPFTLGRVQCSGSRHWVVNPN-RELNEESVVIHGITDS 118

Query: 69  FLKDKPSFSSIFSEFWD 85
            +K+ P    I     D
Sbjct: 119 EVKNAPQLEQILDAILD 135


>gi|332878163|ref|ZP_08445892.1| DNA polymerase III, alpha subunit [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683901|gb|EGJ56769.1| DNA polymerase III, alpha subunit [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 1486

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 19/136 (13%)

Query: 10  IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPE 58
           ++FD ETTGL         DS N  R ++I A +L D        Q FL  P+G     +
Sbjct: 3   LIFDTETTGLPRNYNAPISDSNNWPRAVQI-AWQLHDQWGALIEHQDFLIAPDGFDIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEW-IAHNAKFDVGFINAELQRIN- 114
           A K+HGI+   L +K       +E +  FNE    A++ +  N  FD+  + AE  R   
Sbjct: 62  AEKVHGIST-LLAEKQGVP--IAEVFAAFNEALSKAQYVVGQNIGFDINIMGAEFYRYGV 118

Query: 115 KDPLDPSRIIDTLSIA 130
           + PLD   +IDT + A
Sbjct: 119 ESPLDKLPVIDTCTEA 134


>gi|218514224|ref|ZP_03511064.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3]
          Length = 312

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 48/107 (44%), Gaps = 16/107 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+ ++D IIEIGAV     D         ++  L    R    E  +L GI
Sbjct: 61  VVLDTETTGLNHRSDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIPREVTRLTGI 120

Query: 66  TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           TD  ++    D  S S +  E  D         IAHNA FD  F  A
Sbjct: 121 TDAMVEGQVIDIRSLSDLI-EPADLI-------IAHNAGFDRPFCEA 159


>gi|189460117|ref|ZP_03008902.1| hypothetical protein BACCOP_00753 [Bacteroides coprocola DSM 17136]
 gi|189433159|gb|EDV02144.1| hypothetical protein BACCOP_00753 [Bacteroides coprocola DSM 17136]
          Length = 258

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 9/110 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITD 67
           + FD+ETTG +   DRI+EI  +++  + ++ ++T +V    N   + PEA   +HGI D
Sbjct: 10  VFFDLETTGTNINTDRIVEICYLKVYPNGNEESKTMRV----NPEMHIPEASTAIHGIHD 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           E + D P+F  I  +     + + A+    N+ +FDV  +  E  R   D
Sbjct: 66  EDVADCPTFKEIAKDIAR--DLEGADIAGFNSNRFDVPVLVEEFLRAGID 113


>gi|313204261|ref|YP_004042918.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter
           propionicigenes WB4]
 gi|312443577|gb|ADQ79933.1| Exonuclease RNase T and DNA polymerase III [Paludibacter
           propionicigenes WB4]
          Length = 255

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 29/120 (24%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS------PE----- 58
           + FD+ETTG +   DRI+EI       Y K +        PNGR+ +      PE     
Sbjct: 10  VFFDLETTGTNIVTDRIVEIA------YHKVS--------PNGREETKSIRINPEMHIPE 55

Query: 59  -ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
            +  +HGI D  + D P+F ++  E     + +  +   +N+ +FD+  +  EL R + D
Sbjct: 56  SSSAIHGIYDADVADCPTFKAVAKEI--VRDIEGCDLAGYNSNRFDIPLLAEELLRADID 113


>gi|88703768|ref|ZP_01101484.1| DNA polymerase III, epsilon subunit [Congregibacter litoralis KT71]
 gi|88702482|gb|EAQ99585.1| DNA polymerase III, epsilon subunit [Congregibacter litoralis KT71]
          Length = 203

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 10  IVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           IV D ETTGL  +N    I+ +G + ++   +  ++ +    P  R  S EA  +HGIT+
Sbjct: 19  IVLDTETTGLPDENGLPDIVTLG-ITVVRQREIAKSVEFKTRPKKRI-SEEAQSIHGITN 76

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           E   +  SF S +S   ++  +Q    + HNA FD   +   + R N
Sbjct: 77  EQAAEFKSFDSQWSHMAEYLKDQLI--VIHNASFDWPILRDHVVRYN 121


>gi|86133336|ref|ZP_01051918.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
 gi|85820199|gb|EAQ41346.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
          Length = 359

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 64/163 (39%), Gaps = 27/163 (16%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDEF 69
           + DIETTG     + I EI    +  Y       Q     N  K   E  ++L GI ++ 
Sbjct: 4   ILDIETTGGKFNEEGITEIA---IYKYDGQEIVDQFISLINPEKPIQEFVVRLTGINNKM 60

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---------PLDP 120
           LK+ P F  +     +    +N   +AHN+ FD   +  E  R+  D          L  
Sbjct: 61  LKNAPKFYEVAKRIVEI--TKNCIIVAHNSAFDYRILRTEFDRLGFDFERNTLCTVELSQ 118

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS--HRSKHGAL 161
           + I+D         PS    L  L K  GI IS  HR+   AL
Sbjct: 119 ALILD--------QPSY--SLGKLTKSLGIPISDRHRATGDAL 151


>gi|149910647|ref|ZP_01899284.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
 gi|149806274|gb|EDM66250.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
          Length = 239

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 57/138 (41%), Gaps = 5/138 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGLDS+ + II IG V         R  Q +      K    ++ +HGIT   
Sbjct: 49  VALDFETTGLDSEQNSIISIGLVPFNLQRIFCRQAQHWYIEPEDKLKENSIIIHGITHTD 108

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128
           LK  P    I     D    +    + H  + +  F +  L+  IN+  + P  +IDT+ 
Sbjct: 109 LKGAPDLLRILEPVLDALAGKVV--VVHYRRIERDFFDNHLRSFINEGIVFP--VIDTMQ 164

Query: 129 IARRKHPSSRNDLNSLCK 146
           I      S  N   SL K
Sbjct: 165 IEADVQESQNNSFFSLFK 182


>gi|51597447|ref|YP_071638.1| bacteriophage protein [Yersinia pseudotuberculosis IP 32953]
 gi|186896564|ref|YP_001873676.1| exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590729|emb|CAH22374.1| putative conserved bacteriophage protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186699590|gb|ACC90219.1| Exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis PB1/+]
          Length = 233

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 20/180 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGLD+  + I+EI  ++ +     N      + P G   S +   +HGIT++ 
Sbjct: 61  LILDTETTGLDNAAE-IVEISIIDCMG----NVLLDTLIKPLGFIPS-DVEAIHGITNKM 114

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINK---DPLDPSRII 124
           + + P +  I  +F +    +N  ++A+N++FD   I  +AE   +     D    S   
Sbjct: 115 VDNAPHWCDIHEKFIEIIKSRN--FVAYNSRFDTRLIYQSAEFSGVTTGADDIASASGNC 172

Query: 125 DTLSIAR--RKHPSSRNDL--NSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGG 178
             L  AR   +  S ++D    +L    G    I+  + H AL D      V IK M GG
Sbjct: 173 AMLEYARFHGQWDSRQSDFKWQTLIAAAGQMNVITEGASHRALSDCKTTLGV-IKAMAGG 231


>gi|55822780|ref|YP_141221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus thermophilus CNRZ1066]
 gi|55738765|gb|AAV62406.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 828

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 84/176 (47%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K+  +  + D+E T   S    II++G V ++   +    F   + P+ + ++   +
Sbjct: 1   MSEKSTNKYAIVDLEATS-ASSTACIIQVGIV-IMQNGRVIDEFASDVNPHQKLDN-HIV 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I    ++    ++  ++AHN KFD   + AE   +    L  
Sbjct: 58  HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLL-AEALFMEGFELRT 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R +DT+ +A+  +P+  + +L+ L +   + ++    H A+ D+     + + +M
Sbjct: 115 PR-VDTVELAQVFYPTLEQYNLSYLSRVLNLDLAQ--AHTAIEDARATGKLLLHLM 167


>gi|319952129|ref|YP_004163396.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM
           14237]
 gi|319420789|gb|ADV47898.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM
           14237]
          Length = 457

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 11/167 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69
           + DIETTG   + ++I EI   +   Y      F   + P      P  +  L GI +  
Sbjct: 4   IIDIETTGNGIQGNKITEISIFKYDGYDVIEE-FTTLINPEAE--IPYFITGLTGIDNTM 60

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++ P FS +  +      E    ++AHN  FD   I  E + I  D +   + + T+ +
Sbjct: 61  VRNAPKFSEVADQILKITEE--TIFVAHNVSFDYNIIKHEFKAIGVDFI--RQKLCTVRL 116

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R+  P   +  L  LC    I ++ R  H A  D+   + ++ K++
Sbjct: 117 SRKLFPGYNSYSLGKLCTALKIPLTDR--HRARGDAEATTILFEKLL 161


>gi|189235963|ref|XP_969322.2| PREDICTED: similar to p15-2a protein [Tribolium castaneum]
          Length = 292

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 18/120 (15%)

Query: 10  IVFDIETTGL---DSKNDRIIEIGAVELLDYSKTNRTFQ----------VFLCPN-GRKN 55
           + FD+ETTGL   +    RI E  AV +       +T Q          + LC N  R  
Sbjct: 8   VFFDLETTGLPKFEENRTRITEFCAVAVRADHIGLQTAQKCKLPRVQSKLSLCFNPARAI 67

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEF---WDFFNEQNAEWIAHNA-KFDVGFINAELQ 111
            P+A KL G+++E L+ +  FSS        W   NE+    +AHN  +FD   + AE++
Sbjct: 68  CPQATKLTGLSNELLEHQAHFSSQTLNVIKNWLDVNEKPICLVAHNGNEFDFPILRAEIE 127


>gi|157375459|ref|YP_001474059.1| DNA polymerase III subunit epsilon [Shewanella sediminis HAW-EB3]
 gi|157317833|gb|ABV36931.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis
           HAW-EB3]
          Length = 238

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 5/121 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGLD+  + II IG V   L      +    F+ P   K   +++ +HGIT  
Sbjct: 49  VALDFETTGLDANQNSIISIGLVPFTLQRIACRQAKHWFVTPED-KLQEDSIIIHGITHS 107

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK  P    I  +  D    +    + H  + +  F +A L+ + K+ +    ++DT+ 
Sbjct: 108 DLKGAPDLLRILEQLLDELAGKIV--VVHYRRIERDFFDAALRSLIKEGI-VFPVVDTMQ 164

Query: 129 I 129
           I
Sbjct: 165 I 165


>gi|312131463|ref|YP_003998803.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella
           byssophila DSM 17132]
 gi|311908009|gb|ADQ18450.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella
           byssophila DSM 17132]
          Length = 270

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 9/131 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68
           + D+ETTG++   DRI+EI   +  LD +   RT +V    N     P E   +HGI DE
Sbjct: 14  IIDLETTGVNITRDRIVEICIAKANLDGTVETRTKKV----NPTIPIPLETSLIHGIYDE 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            + ++P+F  +      F    +      N +FD+  +  E  R++ +  D    ++ID 
Sbjct: 70  DVANEPTFKQLARSLAQFLEGCDLAGFNSN-RFDIPMLVEEFLRVDSNLFDIKNRKLIDV 128

Query: 127 LSIARRKHPSS 137
             I     P +
Sbjct: 129 QRIFHLMEPRT 139


>gi|120597914|ref|YP_962488.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp.
           W3-18-1]
 gi|120558007|gb|ABM23934.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp.
           W3-18-1]
          Length = 301

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 9/103 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64
           ++ D ETTGL + ++ IIE+G V++L      R   +     L  +  K  PE + +L G
Sbjct: 53  VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELITELTG 112

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITD+ ++ +    S+ +     +   +   +AHNA+FD  F  
Sbjct: 113 ITDDMVQGQHIDDSLVAS----WLSDDPLVVAHNAQFDRPFFE 151


>gi|312278202|gb|ADQ62859.1| ATP-dependent DNA helicase [Streptococcus thermophilus ND03]
          Length = 828

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 84/176 (47%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K+  +  + D+E T   S    II++G V ++   +    F   + P+ + ++   +
Sbjct: 1   MSEKSTNKYAIVDLEATS-ASSTACIIQVGIV-IMQNGRVIDEFASDVNPHQKLDN-HIV 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I    ++    ++  ++AHN KFD   + AE   +    L  
Sbjct: 58  HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLL-AEALFMEGFELRT 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R +DT+ +A+  +P+  + +L+ L +   + ++    H A+ D+     + + +M
Sbjct: 115 PR-VDTVELAQVFYPTLEQYNLSYLSRVLNLDLAQ--AHTAIEDARATGKLLLHLM 167


>gi|297623751|ref|YP_003705185.1| exonuclease RNase T and DNA polymerase III [Truepera radiovictrix
           DSM 17093]
 gi|297164931|gb|ADI14642.1| Exonuclease RNase T and DNA polymerase III [Truepera radiovictrix
           DSM 17093]
          Length = 177

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 8/99 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGL  K+  +IE+     L  ++        + P   + +P A ++H IT   
Sbjct: 14  LILDTETTGL--KSAEVIELA----LLSTRGEVLLDTLVRPKVMRLNPYAARVHRITLAE 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           L D+P++  +  E       + A  +A NA FD   + A
Sbjct: 68  LADRPTWPEVLPELRRL--AERATVLAWNAPFDARMLEA 104


>gi|255011868|ref|ZP_05283994.1| putative exonuclease [Bacteroides fragilis 3_1_12]
 gi|313149703|ref|ZP_07811896.1| DNA polymerase III [Bacteroides fragilis 3_1_12]
 gi|313138470|gb|EFR55830.1| DNA polymerase III [Bacteroides fragilis 3_1_12]
          Length = 175

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 14/169 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I F+  T  ++S       +G V + D   T+  + +   P         L +HGIT E 
Sbjct: 8   IDFETATGYMESA----CAVGIVTVTDGEITDEYYSLIQPPENEYWRANIL-VHGITPEM 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDP-LDPSRIIDT 126
            +  P F +I+ E       Q    +AHN +FD   +     + R++ D  L P     T
Sbjct: 63  TESLPGFHAIYPEIKKRL--QGKVVVAHNEQFDRNVLKRTMRMYRLDYDELLLPEHWECT 120

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             I R       N L++ C+R GI + H   H AL D+   + +Y+  +
Sbjct: 121 CRIYRSLGYKPVN-LSACCEREGIELKH---HEALSDARGCAKLYLNYL 165


>gi|148543638|ref|YP_001271008.1| exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri
           DSM 20016]
 gi|184153052|ref|YP_001841393.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112]
 gi|227363391|ref|ZP_03847517.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3]
 gi|227545077|ref|ZP_03975126.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A]
 gi|300909253|ref|ZP_07126714.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
 gi|325682001|ref|ZP_08161519.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM4-1A]
 gi|148530672|gb|ABQ82671.1| Exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri
           DSM 20016]
 gi|183224396|dbj|BAG24913.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112]
 gi|227071580|gb|EEI09877.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3]
 gi|227184926|gb|EEI64997.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A]
 gi|300893118|gb|EFK86477.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
 gi|324978645|gb|EGC15594.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM4-1A]
          Length = 179

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGI +  +++ P F  ++     F+       IAHN +FD   +   L+  N + +  
Sbjct: 52  QIHGIHERDVQNAPDFPEVWEHINQFYTPDKLV-IAHNNRFDNSVLRNTLEHYNIE-VPA 109

Query: 121 SRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            + +DT++ +R+  P   N  LN++C    I + H   H AL D+   +++ +
Sbjct: 110 YQTLDTVASSRQLIPGLTNYKLNTVCDALNIDLHHH--HNALDDAQACANILL 160


>gi|153829717|ref|ZP_01982384.1| Gp39 [Vibrio cholerae 623-39]
 gi|148874796|gb|EDL72931.1| Gp39 [Vibrio cholerae 623-39]
          Length = 192

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 37/181 (20%)

Query: 11  VFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + D ETTGLDSK+ +I+E+ A+     EL+ YS   R       P G   + EA ++HGI
Sbjct: 11  ILDTETTGLDSKS-QIVEVTAICAKSGELI-YSSLVR-------PQGFIPA-EATRIHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRII 124
           T+  + D P+F  I          +N   I +NA FD   FI +  + +    LD     
Sbjct: 61  TNSDVADAPTFLDIIYPL--SLALRNRTGIIYNADFDSRMFIQSYERNLQISHLDLRSAY 118

Query: 125 DTLSIARRKHPSSRN-------------------DLNSLCKRYGITISHRSKHGALLDSH 165
             L         + N                    L + C++ GI IS  + H AL D  
Sbjct: 119 FALKHKLLNSQCAMNWYAQFWGEFDTTNGGYRWQRLTNACQQQGIDISDLTAHRALADCE 178

Query: 166 L 166
           +
Sbjct: 179 M 179


>gi|149190815|ref|ZP_01869080.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
 gi|148835377|gb|EDL52349.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
          Length = 239

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 5/126 (3%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N++  +  D ETTGL+   D I+ IG V       +  +     + P  +    E++ +H
Sbjct: 45  NELEFVALDFETTGLNPDKDGILSIGLVPFNASRIRLKQAAHWTIRPKAKLEE-ESVVIH 103

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   + D P+   +  +       +    + H    + GF+N+ L+R+  + ++   +
Sbjct: 104 GITHNDILDAPTLDEVLGDVLSALAGKII--VVHYRPIERGFLNSALKRMIGEGIE-FPV 160

Query: 124 IDTLSI 129
           +DT+ I
Sbjct: 161 VDTMQI 166


>gi|323143472|ref|ZP_08078155.1| putative DNA polymerase III, epsilon subunit [Succinatimonas hippei
           YIT 12066]
 gi|322416757|gb|EFY07408.1| putative DNA polymerase III, epsilon subunit [Succinatimonas hippei
           YIT 12066]
          Length = 321

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 22/114 (19%)

Query: 6   KMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYS-------KTNRTFQVFLCPNGRKNSP 57
           ++  +VF D ETTG+D   ++IIE+G V  + YS         +R +  F  P G+K   
Sbjct: 74  RVHHVVFLDTETTGMDCNQEKIIELGMVR-VTYSFDRKLMLSIDRIYDEFEDP-GKKIPL 131

Query: 58  EALKLHGITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           E  +L  ITDE +     D  S S I +             +AHNAKFD  F +
Sbjct: 132 EIQQLTHITDEMVAGHRFDNDSVSQILA--------GRPLVVAHNAKFDRPFFD 177


>gi|78186412|ref|YP_374455.1| exonuclease [Chlorobium luteolum DSM 273]
 gi|78166314|gb|ABB23412.1| Exonuclease [Chlorobium luteolum DSM 273]
          Length = 197

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 82/177 (46%), Gaps = 25/177 (14%)

Query: 7   MRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHG 64
           M+K++ FD+ETTG+D     II+   +  ++      +F++ + P+ G     EAL + G
Sbjct: 1   MKKVLWFDLETTGIDPDRHGIIQFAGLAEIE-GVVAESFEIKMQPHEGAMIEDEALAVSG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFN------EQNAEWI--AHNAKFDVGFINAELQR---- 112
            + E +      +  +     F        E+N ++    +N +FD+ F++   +R    
Sbjct: 60  FSREQIASFTPHAEAYKAIDGFLARHVSRFERNDKFYPAGYNVRFDLDFLSRMFRRYDQY 119

Query: 113 -----INKDPLDPSRIIDTLS-IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                IN   LDP  I++ +  + R   P+ +  L ++C+  G+ +   + H AL D
Sbjct: 120 GLGSFINWRSLDPQPILNIMEYMGRLSLPNHK--LQTVCEHLGVRLE--NAHDALSD 172


>gi|258624141|ref|ZP_05719091.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258583572|gb|EEW08371.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 289

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 14/99 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---SPEALKLH 63
           +  +V D ETTGL  + D++IE+   ++          +V LC   R      P+A+ +H
Sbjct: 104 LEPLVLDTETTGLGER-DQVIELAVTDIRG--------EVLLCTRLRPTVGIDPQAMGVH 154

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           GIT+  L ++P+++ +        + ++   +  N+ FD
Sbjct: 155 GITEAELSNEPTWTQVAPALARLLSGRHL--VIFNSSFD 191


>gi|55820864|ref|YP_139306.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55736849|gb|AAV60491.1| ATP-dependent DNA helicase, truncated [Streptococcus thermophilus
           LMG 18311]
          Length = 557

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 84/176 (47%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K+  +  + D+E T   S    II++G V ++   +    F   + P+ + ++   +
Sbjct: 12  MSEKSTNKYAIVDLEATS-ASSTACIIQVGIV-IMQNGRVIDEFASDVNPHQKLDN-HIV 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I    ++    ++  ++AHN KFD   + AE   +    L  
Sbjct: 69  HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLL-AEALFMEGFELRT 125

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R +DT+ +A+  +P+  + +L+ L +   + ++    H A+ D+     + + +M
Sbjct: 126 PR-VDTVELAQVFYPTLEQYNLSYLSRVLNLDLAQ--AHTAIEDARATGKLLLHLM 178


>gi|77461407|ref|YP_350914.1| exonuclease [Pseudomonas fluorescens Pf0-1]
 gi|77385410|gb|ABA76923.1| putative DNA poymerase [Pseudomonas fluorescens Pf0-1]
          Length = 235

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 12/102 (11%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKT-NRTFQVFLCPNGRKNSPEAL 60
           + R +V D+ETTGL+   DR++ IGAV +    +D+S+   RT Q     +  K  P  L
Sbjct: 38  EQRWVVLDLETTGLNLSKDRVLSIGAVVIEDGAIDFSQQFERTLQC----HELKLGPSVL 93

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
            +HG+    +      +    E  +F  +     +A +A FD
Sbjct: 94  -IHGLAPSAIAAGSEPTEALVELLEFIGDSPV--LAFHASFD 132


>gi|194468196|ref|ZP_03074182.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri
           100-23]
 gi|194453049|gb|EDX41947.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri
           100-23]
          Length = 178

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGI +  +++ P F  ++     F+       IAHN +FD   +   L+  N + +  
Sbjct: 51  QIHGIHERDVQNAPDFPEVWEHINQFYTPDKLV-IAHNNRFDNSVLRNTLEHYNIE-VPA 108

Query: 121 SRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            + +DT++ +R+  P   N  LN++C    I + H   H AL D+   +++ +
Sbjct: 109 YQTLDTVASSRQLIPGLTNYKLNTVCDALNIDLHHH--HNALDDAQACANILL 159


>gi|160689394|gb|ABX45555.1| polymerase C [Bacillus tequilensis]
          Length = 259

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160
           D+GF+N   +++ +     + +IDTL + R  +P  +N  LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKKLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+   + + +KM+   ++  I +  + NE+
Sbjct: 59  IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90


>gi|309810273|ref|ZP_07704115.1| exonuclease [Dermacoccus sp. Ellin185]
 gi|308435765|gb|EFP59555.1| exonuclease [Dermacoccus sp. Ellin185]
          Length = 534

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 13/118 (11%)

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +LHGI  + ++D+PS++   +E  +F  +     ++HNA FD+G I         D +  
Sbjct: 57  QLHGIDADTVRDQPSWAGRLTEIVEFIGDDIV--VSHNASFDIGVIR---YACAADGIAW 111

Query: 121 SRI--IDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            RI    TL  ARR  + PS R  L  +   YG  ++    H AL D+     V + M
Sbjct: 112 PRIDFFCTLVAARRHLRLPSYR--LPFVLDAYGAEVN--DHHHALADAEAAGRVAVLM 165


>gi|94501813|ref|ZP_01308325.1| DNA polymerase III subunit epsilon [Oceanobacter sp. RED65]
 gi|94426034|gb|EAT11030.1| DNA polymerase III subunit epsilon [Oceanobacter sp. RED65]
          Length = 238

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 34/188 (18%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-----RKNSP---EALK 61
           +  D ETTGL+  +D II IG V          + Q   C N      R N+P   E++ 
Sbjct: 47  MALDFETTGLNPNDDSIISIGMVPF--------SLQRIYCNNAVYWVVRPNTPLSEESIL 98

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H I    ++  P    +     +  +E     + H  + +  F+N  L+    + L   
Sbjct: 99  IHHIKHSEIQSAPRIERLLEPLLEKLSEHIL--VVHFQRIERLFLNNTLKEHLGETLQ-F 155

Query: 122 RIIDTLSIARRK-------------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            +IDT+ I ++               P     LN+  +RY  ++     H AL+D+   +
Sbjct: 156 PLIDTMEIEKKALKARQGLTGRILNKPVGGIRLNNCRERY--SLPQYQSHNALIDAQATA 213

Query: 169 DVYIKMMV 176
           +++I  + 
Sbjct: 214 ELFIAQVA 221


>gi|148545634|ref|YP_001265736.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1]
 gi|148509692|gb|ABQ76552.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1]
          Length = 236

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 18/175 (10%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKT-NRTFQVFLCPNGRKNSPEAL 60
           + R +V D+ET+GL+   D+++ IGAV +    +D+++   RT      P  + N+  ++
Sbjct: 38  EQRWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHR---PLQKTNA--SV 92

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HG+    L      +    +  DF    N+  +A +A FD   +   L+      L  
Sbjct: 93  LIHGLGPSALAAGCDPAEALLDLLDFIG--NSPVLAFHAPFDQRMLARALKETLGHRLQ- 149

Query: 121 SRIIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           S  +D   +A   +P +      L+    R+G+ +  R  H A  D+ + +++ +
Sbjct: 150 SMFLDVAELAPMLNPDTVLREAGLDDWVARFGLQVEER--HHASADAQVTAELAL 202


>gi|330446342|ref|ZP_08309994.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490533|dbj|GAA04491.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 249

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 5/121 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL++  D II +G V    +    +  Q ++     K   E++ +HGIT   
Sbjct: 60  VALDFETTGLNANKDDIISVGLVPFTIHRIYCKQSQHWVVKPKSKLDEESVIIHGITHSD 119

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTLS 128
           ++  P    I     D    +    + H    +  F++  L  R+N+    P  ++DTL+
Sbjct: 120 VQTAPDLRRILESVLDALAGKVV--VVHYKAIERQFMDKALHVRLNEGIQFP--VVDTLA 175

Query: 129 I 129
           I
Sbjct: 176 I 176


>gi|160689328|gb|ABX45522.1| polymerase C [Bacillus subtilis]
 gi|160689330|gb|ABX45523.1| polymerase C [Bacillus subtilis]
 gi|160689334|gb|ABX45525.1| polymerase C [Bacillus subtilis]
 gi|160689342|gb|ABX45529.1| polymerase C [Bacillus subtilis]
 gi|160689374|gb|ABX45545.1| polymerase C [Bacillus subtilis]
 gi|160689376|gb|ABX45546.1| polymerase C [Bacillus subtilis]
 gi|160689378|gb|ABX45547.1| polymerase C [Bacillus subtilis]
 gi|160689404|gb|ABX45560.1| polymerase C [Bacillus subtilis]
 gi|160689422|gb|ABX45569.1| polymerase C [Bacillus subtilis]
 gi|160689426|gb|ABX45571.1| polymerase C [Bacillus subtilis]
 gi|160689428|gb|ABX45572.1| polymerase C [Bacillus subtilis]
 gi|160689430|gb|ABX45573.1| polymerase C [Bacillus subtilis]
 gi|160689436|gb|ABX45576.1| polymerase C [Bacillus subtilis]
 gi|160689440|gb|ABX45578.1| polymerase C [Bacillus subtilis]
 gi|160689450|gb|ABX45583.1| polymerase C [Bacillus subtilis]
 gi|160689460|gb|ABX45588.1| polymerase C [Bacillus subtilis]
          Length = 259

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160
           D+GF+N   +++ +     + +IDTL + R  +P  +N  LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKKLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+   + + +KM+   ++  I +  + NE+
Sbjct: 59  IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90


>gi|160689348|gb|ABX45532.1| polymerase C [Bacillus subtilis subsp. spizizenii]
          Length = 259

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160
           D+GF+N   +++ +     + +IDTL + R  +P  +N  LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKKLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+   + + +KM+   ++  I +  + NE+
Sbjct: 59  IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90


>gi|294787077|ref|ZP_06752331.1| DNA polymerase III, epsilon subunit [Parascardovia denticolens
           F0305]
 gi|294485910|gb|EFG33544.1| DNA polymerase III, epsilon subunit [Parascardovia denticolens
           F0305]
          Length = 244

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 19/187 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           FD ETTG     D I     V L D +     +R  Q  + P G   +P A +++G TD 
Sbjct: 18  FDTETTGACYGTDAIASASLV-LRDPAAGFPGDRISQWIINP-GVPMNPFASQVNGFTDA 75

Query: 69  FLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-- 122
           +L+    D+       +E       +    +A+NA FDV  ++ +L+R+    L+     
Sbjct: 76  YLQEHGQDQAEAIGQIAETILLAQSKRIPLLAYNAPFDVAMLDGDLRRLGDRNLNQQTQD 135

Query: 123 ------IIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 I+D L + R   H   +  L      YG+   H S H A  D+    D+   M+
Sbjct: 136 LGHELLIVDPLVLDRSVSHRKGKRTLTDTTYYYGVQ-PHGSFHDATADTIAAVDLVAPMV 194

Query: 176 VGGSQIN 182
               Q+ 
Sbjct: 195 TLYPQVG 201


>gi|315226729|ref|ZP_07868517.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
 gi|315120861|gb|EFT83993.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
          Length = 292

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 19/187 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           FD ETTG     D I     V L D +     +R  Q  + P G   +P A +++G TD 
Sbjct: 66  FDTETTGACYGTDAIASASLV-LRDPAAGFPGDRISQWIINP-GVPMNPFASQVNGFTDA 123

Query: 69  FLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-- 122
           +L+    D+       +E       +    +A+NA FDV  ++ +L+R+    L+     
Sbjct: 124 YLQEHGQDQAEAIGQIAETILLAQSKRIPLLAYNAPFDVAMLDGDLRRLGDRNLNQQTQD 183

Query: 123 ------IIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 I+D L + R   H   +  L      YG+   H S H A  D+    D+   M+
Sbjct: 184 LGHELLIVDPLVLDRSVSHRKGKRTLTDTTYYYGVQ-PHGSFHDATADTIAAVDLVAPMV 242

Query: 176 VGGSQIN 182
               Q+ 
Sbjct: 243 TLYPQVG 249


>gi|218288682|ref|ZP_03492945.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241040|gb|EED08216.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 218

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 80/185 (43%), Gaps = 14/185 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68
           V D+ET+G     D+I+ +       + S+ + +F   +  +   + P  + +L G++ +
Sbjct: 32  VLDLETSGFSPARDKILSVACATFSGWSSEPDESFYAVVRHDDVADVPSHIWELTGLSPQ 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF---INAELQRINKDPLDPSRIID 125
            + D     +      +    +   W+AH+ + D+ F   ++  L R+   PL     + 
Sbjct: 92  AVLDGEPLDAALRRALELGAGRV--WVAHHVRHDLSFLQRVSDALWRLRLRPLAIDTAVV 149

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             ++AR   P +   L+  CK  G+ +  R  H A  D  + + V+ K M     +  G 
Sbjct: 150 GQALARAPRPLT---LDEACKWLGVPVIGR--HQADADVRMTAAVWRKEM--ELCMRLGL 202

Query: 186 KTNED 190
           +T +D
Sbjct: 203 QTVKD 207


>gi|152998334|ref|YP_001343169.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1]
 gi|150839258|gb|ABR73234.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1]
          Length = 236

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 20/167 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDE 68
           +  D+ETTGLD   D II +G + L       +  + ++  P    N+ E++ +H IT  
Sbjct: 52  LALDLETTGLDPSQDEIISLGLIPLNHKIIRCQGAKYWMAKPECSLNA-ESVTIHEITHS 110

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P   +I  E       Q    + H    +  F+     +I   PL    ++DT+ 
Sbjct: 111 ELEEAPRLHAILDEILLALTHQVI--VVHCVAIERQFLLKASMKIYGYPLY-FPVLDTMD 167

Query: 129 IARR-----------KHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           I R+           + PS R  L++  +RY   +     H AL D+
Sbjct: 168 IERQVTFKPWWKRFGRRPSLR--LDACRQRY--KLPRYKAHHALTDA 210


>gi|329770482|ref|ZP_08261860.1| hypothetical protein HMPREF0433_01624 [Gemella sanguinis M325]
 gi|328836231|gb|EGF85900.1| hypothetical protein HMPREF0433_01624 [Gemella sanguinis M325]
          Length = 614

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 18/158 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V DIE T    ++  II+  A +L +D+ K + +   ++ P  ++ S    +  GIT E 
Sbjct: 8   VVDIELT----EDKEIIQFSATKLSIDFKKIS-SIDYYVKP-KKEISSFVSEFTGITPEM 61

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+DKP F  I    +++   ++   + H  + D   I     ++    + P R +DT+ +
Sbjct: 62  LEDKPLFKEIAYGIYEYI--KDCTLVCHGLQSDYLVIKKNFMKVGIKYI-PYRTVDTVEL 118

Query: 130 ARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLD 163
           AR   P+ ++    DL++    Y    S    H AL+D
Sbjct: 119 ARILFPTQKSYRLVDLSNSLNLY----SGTGYHNALID 152


>gi|160689338|gb|ABX45527.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689350|gb|ABX45533.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|160689352|gb|ABX45534.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|160689354|gb|ABX45535.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689356|gb|ABX45536.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|160689358|gb|ABX45537.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|160689360|gb|ABX45538.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689362|gb|ABX45539.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689412|gb|ABX45564.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689414|gb|ABX45565.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|293627263|gb|ADE58306.1| DNA polymerase III alpha subunit [Bacillus subtilis subsp.
           inaquosorum]
          Length = 259

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160
           D+GF+N   +++ +     + +IDTL + R  +P  +N  LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKKLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+   + + +KM+   ++  I +  + NE+
Sbjct: 59  IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90


>gi|78485464|ref|YP_391389.1| DNA polymerase III subunit epsilon [Thiomicrospira crunogena XCL-2]
 gi|78363750|gb|ABB41715.1| Exonuclease [Thiomicrospira crunogena XCL-2]
          Length = 207

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 23/177 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + FD ETTGL+ + DRI+ + A+     E+L     N TF           S E++K+H 
Sbjct: 32  VCFDCETTGLNPRKDRIVSLSAIKIRGNEVLTSEALNLTFV-----QEAAISEESIKIHW 86

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I +E  K   S       F  F   +    + +  +FDV  +N    +I K  L  +   
Sbjct: 87  IRNEDTKAGLSEQEGIEAFLHFIGSRPL--VGYYLEFDVAMVN----QIIKPWLGITLPN 140

Query: 125 DTLSIARRKH-------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + ++ R +       P    DL        + + +  +H A  D+ + S +YIK+
Sbjct: 141 AQIEVSSRYYDYKEEIIPKKIIDLTFDAILKDLELPNLGQHDAFSDAFMTSLIYIKL 197


>gi|315605967|ref|ZP_07880998.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315312249|gb|EFU60335.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 250

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 19/177 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQV--FLCPNGRKNSPEALKLHGI 65
           FD ETTG+    DR++    V  +D +      +   QV  +L   G +   +A  +HGI
Sbjct: 11  FDTETTGVRPLKDRLVTAALVLRIDGASYRFGVSEPDQVATWLTDPGVEIPEQATAVHGI 70

Query: 66  TDEFLKDKP-SFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLD-- 119
           T    +D+      +  E      E   +    +A NA +D+  +N EL+R      +  
Sbjct: 71  TTAQARDEGRPIEEVLHELAGSIVEHWLRGYPLVAFNASYDITLVNQELRRHRVGSFEER 130

Query: 120 ----PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
               P  ++D L + R+  +    +  L  +   YG  +S  + H A +D  +  DV
Sbjct: 131 LEGAPMLVVDPLVLDRKLDRFRKGKKTLTEMAPVYGAAVSPDA-HTAEVDVAMTLDV 186


>gi|168702572|ref|ZP_02734849.1| exonuclease [Gemmata obscuriglobus UQM 2246]
          Length = 183

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 15/149 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--KLHGITD 67
           +  D ET   D   D    IG +  ++ +K  R   V +    R   P  +  ++HGIT 
Sbjct: 19  VAIDFETA--DHGPDSACAIG-LARVENNKVVRREAVLI----RPPRPRVMFTEVHGITW 71

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQRINKD-PLDPSRIID 125
             +++   F  ++         + A+++A HNA FD   ++A       D P  P   + 
Sbjct: 72  PMVQNASPFGDVWRGLLPII--EGAKFLAAHNASFDRRVLHACCIAAGLDVPALP--FVC 127

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISH 154
           T+ IARRK      +L ++C+R GI + H
Sbjct: 128 TVQIARRKWALKPANLPAVCRRLGIGLIH 156


>gi|241205541|ref|YP_002976637.1| exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240859431|gb|ACS57098.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 199

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 7/149 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           ++ I  D ET   + +      +G   + D  +  R  +  + P   + S   + +HGI 
Sbjct: 4   LKTIAIDFETA--NEQRGSACSVGLAWIED-GRVTRVEERLIRPREMRFSGMNIAIHGIR 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D P F  +  EF +  +   A  IAHNA FD     A L  + +        + +
Sbjct: 61  PEHVEDAPEFPEVMDEFHE--DISGATMIAHNAAFDFSVWRASLD-LYRQSYPELTYLCS 117

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISH 154
           L +A+R  P    + LN + +  G+   H
Sbjct: 118 LKMAQRIWPHFLSHRLNLIAEHLGLRFVH 146


>gi|160931331|ref|ZP_02078731.1| hypothetical protein CLOLEP_00168 [Clostridium leptum DSM 753]
 gi|156869715|gb|EDO63087.1| hypothetical protein CLOLEP_00168 [Clostridium leptum DSM 753]
          Length = 172

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETT LD    RIIEI    ++D +         + P G     EA  +H I+ + 
Sbjct: 17  VILDTETTDLDG---RIIEI---SIIDAATGTVLMDQLINPQGAPICAEARTVHHISPDD 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           L   P+F+ +     D   ++    +A NA FD   I AE
Sbjct: 71  LATAPTFTQVRPRLEDVVADRVV--MAWNAPFDRERIEAE 108


>gi|170744636|ref|YP_001773291.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
 gi|168198910|gb|ACA20857.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 296

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 12/99 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEAL-KLH 63
           +V D ETTGLD   D +IE+G V    Y ++ R ++V      L   G K  PEA+ +L 
Sbjct: 42  LVLDTETTGLDPACDEVIELGIVAFT-YGQSGRIYRVRHRFNQLHQPG-KPIPEAVTRLT 99

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           GITD  +  K     I          +    IAHNA+FD
Sbjct: 100 GITDADVAGK----RIDDAAVAALAAKARVVIAHNARFD 134


>gi|256381025|ref|YP_003104685.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
 gi|255925328|gb|ACU40839.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
          Length = 382

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 13/146 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+ETTG   ++DR++E+  V+L    +    +   L P GR   P+   +H I 
Sbjct: 1   MGYAVVDVETTGF-RRSDRVVEVAVVQLDRDRRVTGEWCTLLNP-GRDLGPQ--HVHRIR 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +   P+F+                 +AHN  FD  F+ AE  R+  D        D 
Sbjct: 57  AADVWGAPTFALAAGAL--ARRLAGRVLVAHNLAFDARFLAAEFGRVGVD-------ADF 107

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITI 152
             +   +    R  L   C   G+ +
Sbjct: 108 DGLCTMRLSGGRRSLRDCCADAGVPL 133


>gi|223986774|ref|ZP_03636758.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM
           12042]
 gi|223961261|gb|EEF65789.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM
           12042]
          Length = 187

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 16/106 (15%)

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI------AHNAKFDVGFINAEL 110
           P  + +HGIT + + D P F  ++        EQ   W+      AHNA FD+  + A  
Sbjct: 50  PSFIDIHGITPDQVADAPFFPKVY--------EQLKPWLDGGVLCAHNAGFDMKVL-ASC 100

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHR 155
             + +  L  +    T+ ++R+ +P  ++  LN +C   GI + H 
Sbjct: 101 CSLYRLELPDAPYFCTVKLSRKVYPYLKHHRLNDVCDYMGIQLDHH 146


>gi|218184498|gb|EEC66925.1| hypothetical protein OsI_33530 [Oryza sativa Indica Group]
          Length = 422

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 7/123 (5%)

Query: 12  FDIETTGLDSKNDR--IIEIGAVELL--DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           FD+ET+      +R  ++E G++ L      +    F   + P+      EAL+  GIT 
Sbjct: 26  FDVETSMPWGPRERRTLLEFGSIFLCPRQLVEVAEPFITLVRPSDLGVVTEALERKGITR 85

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126
             L+D P F  +     +  + +   W  HN   FD   I      I + P +P  +IDT
Sbjct: 86  GALEDAPPFCDVADNIHNVLHGRI--WAGHNIISFDSEIIREAFAEIGRSPPEPKGMIDT 143

Query: 127 LSI 129
           L +
Sbjct: 144 LPL 146


>gi|160689410|gb|ABX45563.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
          Length = 259

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160
           D+GF+N   +++ +     + +IDTL + R  +P  +N  LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKKLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+   + + +KM+   ++  I +  + NE+
Sbjct: 59  IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90


>gi|212636083|ref|YP_002312608.1| DNA polymerase III subunit epsilon [Shewanella piezotolerans WP3]
 gi|212557567|gb|ACJ30021.1| Exonuclease [Shewanella piezotolerans WP3]
          Length = 238

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 7/122 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGLD+  + II IG V   L      +    F+ P   K   +++ +HGIT  
Sbjct: 49  VALDFETTGLDANENSIISIGLVPFTLRRIACRQAKHWFITPED-KLKEDSIIIHGITHS 107

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127
            LK  P    I  +  D    +    + H  + +  F +A L+  IN+  + P  ++DT+
Sbjct: 108 DLKGAPDLLRILEQLLDELAGKIV--VVHYRRIERDFFDAALRSLINEGIVFP--VVDTM 163

Query: 128 SI 129
            I
Sbjct: 164 QI 165


>gi|322382088|ref|ZP_08056018.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153960|gb|EFX46310.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 142

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 8/97 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + ++ D ETTG++  ++ I++I  ++L D +    +    +CP       EA  +HGI
Sbjct: 54  KSKYLILDTETTGIEYDSE-IVDIAIIDL-DKNLIFASLVKPICPIPE----EATMIHGI 107

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           T+E + D PS+  ++++     + +    + +NA FD
Sbjct: 108 TNEMVADAPSWLEVWAQVQKLLSGKTL--LIYNADFD 142


>gi|296110637|ref|YP_003621018.1| exonuclease [Leuconostoc kimchii IMSNU 11154]
 gi|295832168|gb|ADG40049.1| exonuclease [Leuconostoc kimchii IMSNU 11154]
          Length = 177

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 11/168 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   +  +   I I  V    +++    F   + P     S     +HG+ 
Sbjct: 1   MNFIAMDFETANHEKHSAVSIAIAVVR---HNQVVDKFYSLIKPETYF-SARNTAVHGLK 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125
           +  +   P F  ++      F E     +AHNA FD   +   L     +  +P   ++D
Sbjct: 57  ESDVAQAPKFPEVWKIIAPLFKEDKL-VVAHNAAFDNSILKGTLAYYGIE--EPHYMLLD 113

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           T+  +R+  P  +N  LN++ + +GIT+ H   H AL D+   +++ I
Sbjct: 114 TVRTSRKLLPDFKNHKLNTVAENFGITLDHH--HNALDDAVAAANILI 159


>gi|320529722|ref|ZP_08030801.1| exonuclease [Selenomonas artemidis F0399]
 gi|320138083|gb|EFW29986.1| exonuclease [Selenomonas artemidis F0399]
          Length = 221

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 6  KMRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
          +M+ IV D+E   +  +        N  IIEIGAV L +       FQ ++CP       
Sbjct: 2  RMKHIVVDLEMNPIGKEYKEIRRKLNGEIIEIGAVRLSEKFVQEDKFQCYVCPEYGLVKK 61

Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFN 88
             +L GIT E +  +  F+  F  F D+  
Sbjct: 62 HITELTGITQEKVSGQRVFAESFKNFVDWIG 92


>gi|297205524|ref|ZP_06922920.1| DNA polymerase III [Lactobacillus jensenii JV-V16]
 gi|297150102|gb|EFH30399.1| DNA polymerase III [Lactobacillus jensenii JV-V16]
          Length = 317

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 8/167 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF- 69
           + DIETTGL    DRI E+  +++ +        Q+   P   K      KL+GI +   
Sbjct: 37  MLDIETTGLSLYRDRITELAGIKVRNGKVVAEYSQLVKYPKDNKVPRFITKLNGIDEALI 96

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L +        +EF +F        + +N  FD+ FI    ++     L  +  ID L  
Sbjct: 97  LANGMPVKEAITEFRNFIG--GDVIVGYNVNFDLNFIYDLWEKFQLKKL-SNNYIDVLHF 153

Query: 130 ARR-KHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIK 173
           +R      S N L    +R GI+ S  HR    + LD+  + D+Y K
Sbjct: 154 SRVFFKKESHNRLLDCIRRLGISESEAHRGLKDS-LDTKAVFDIYRK 199


>gi|209885528|ref|YP_002289385.1| exonuclease, RNase T and DNA polymerase III [Oligotropha
           carboxidovorans OM5]
 gi|209873724|gb|ACI93520.1| exonuclease, RNase T and DNA polymerase III [Oligotropha
           carboxidovorans OM5]
          Length = 184

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 10/118 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M RK ++  +  D+ET G       ++ IGA ++ D +K    F   L P  R   P+AL
Sbjct: 1   MTRKKEVF-VSVDVETAGPIPGEYSLLSIGACDVGDLTKV---FSCELKPINRNADPKAL 56

Query: 61  KLHGIT-DEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQR 112
           ++ G++ D+  +D     +    F D+      N+++  ++  NA FD  F+N    R
Sbjct: 57  EVSGLSLDKLSRDGLDPRAAMQAFADWLAGLAENDRSIVFVGLNAPFDWSFVNYYFHR 114


>gi|259156119|gb|ACV96067.1| exonuclease, RNase T and DNA polymerase III [Providencia
           alcalifaciens Ban1]
          Length = 301

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 9/103 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64
           ++ D ETTGL + ++ IIE+G V++L      R   +     L  +  K  PE + +L G
Sbjct: 53  VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELITELTG 112

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITD+ ++ +    ++ +     +   +   +AHNA+FD  F  
Sbjct: 113 ITDDMVRGQHIDDALVAS----WLSDDPLVVAHNAQFDRPFFE 151


>gi|269123136|ref|YP_003305713.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus
           moniliformis DSM 12112]
 gi|268314462|gb|ACZ00836.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus
           moniliformis DSM 12112]
          Length = 426

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 7/78 (8%)

Query: 2   IRKNK--MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           IRKN   +  I+ D+ETTG+  KND I+++  ++++     N  F  ++ P    +  +A
Sbjct: 33  IRKNICILNPIILDVETTGI-RKNDEILQLSIIDIM----GNVVFDKYMKPKYVNDWDDA 87

Query: 60  LKLHGITDEFLKDKPSFS 77
            K+H I+ E +K+K   S
Sbjct: 88  FKIHNISHEMVKNKKYIS 105



 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           KI+ D+ETTG+  +ND II++  +++    K  + F  +  P       EA K+H I  E
Sbjct: 250 KIILDLETTGI-RENDEIIQLSIIDI----KGEKLFNEYFKPINVTEWEEAYKIHNIGKE 304

Query: 69  FLKDKPS 75
            L+DK +
Sbjct: 305 MLEDKLT 311


>gi|192289550|ref|YP_001990155.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
           TIE-1]
 gi|192283299|gb|ACE99679.1| Exonuclease RNase T and DNA polymerase III [Rhodopseudomonas
           palustris TIE-1]
          Length = 276

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 44/99 (44%), Gaps = 12/99 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR------TFQVFLCPNGRKNSPEALKLH 63
           I+ DIETTGLD   D IIE+G V+  DYS   R      TF  F  P+      E   + 
Sbjct: 23  IMLDIETTGLDHSTDEIIELGMVK-FDYSAEGRILGVRGTFSAFNEPS-VPIPREITAIT 80

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           GITD  +          + F D         IAHN+ FD
Sbjct: 81  GITDGMVAGHGFDVHAVAAFVD----DAVIVIAHNSGFD 115


>gi|307700293|ref|ZP_07637333.1| exonuclease [Mobiluncus mulieris FB024-16]
 gi|307614504|gb|EFN93733.1| exonuclease [Mobiluncus mulieris FB024-16]
          Length = 141

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 8/129 (6%)

Query: 7   MRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLH 63
           MR+ V  D ET   + +      +G V      K + ++   L P+   +  +P  + +H
Sbjct: 1   MREFVAIDFETA--NEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWVH 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E ++D P +S I  +   F  ++    +AHN  FD G++ ++L  +      P+R 
Sbjct: 59  GITSEDVQDAPQWSDIADQVMTFIGDRPI--VAHNMAFD-GYVLSDLASLYGTEEIPNRR 115

Query: 124 IDTLSIARR 132
             T+ +AR+
Sbjct: 116 FCTVRLARK 124


>gi|188582299|ref|YP_001925744.1| DNA polymerase III subunit epsilon [Methylobacterium populi BJ001]
 gi|179345797|gb|ACB81209.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
          Length = 298

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 10/103 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-----SPEALKLHG 64
           ++ D+ETTGLD + D IIE+ A+   +Y      F V     G +      +PE   + G
Sbjct: 45  LMVDVETTGLDPQRDEIIEL-AMTPFNYGLDGTVFSVGDSFQGLRQPSEPITPEITAITG 103

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           IT+E +  +    +  ++    F    +  IAHNA FD  F+ 
Sbjct: 104 ITNEMVAGQVIDPAEVAK----FAAPASLVIAHNAAFDRRFLE 142


>gi|291542505|emb|CBL15615.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Ruminococcus bromii L2-63]
          Length = 296

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 34/182 (18%)

Query: 7   MRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEAL 60
           M  ++ D+E  G  SK      + IIEIGAV+L D      TF + + P  G+K   +  
Sbjct: 1   MSYVILDLEWNGSYSKVLHKFVNEIIEIGAVKLDDELNVCDTFTMLVAPKIGKKLCSKVK 60

Query: 61  KLHGITDEFLKDKP-SFSSIFSEFWDF--------FNEQNAEWIAHNAKFDVG-----FI 106
           +L  IT+E LKD+  SF    S F DF        +++ +   +  N  +  G     F+
Sbjct: 61  QLTKITNEELKDEGVSFIRAISLFSDFLGDGVLMTWSDSDLHALIENYSYYTGRTRLPFL 120

Query: 107 N--AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +    LQ   +D LD                S +  L +  +  G+  S   +H AL D 
Sbjct: 121 SRYCNLQSYCEDCLD------------LHDSSCQLGLGACAEMAGVDFSEDDQHRALADV 168

Query: 165 HL 166
           +L
Sbjct: 169 YL 170


>gi|269977446|ref|ZP_06184418.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
 gi|269934362|gb|EEZ90924.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
          Length = 303

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 8/129 (6%)

Query: 7   MRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLH 63
           MR+ V  D ET   + +      +G V      K + ++   L P+   +  +P  + +H
Sbjct: 1   MREFVAIDFETA--NEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWVH 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E ++D P +S I  +   F  ++    +AHN  FD G++ ++L  +      P+R 
Sbjct: 59  GITSEDVQDAPQWSDIADQVMTFIGDRPI--VAHNMAFD-GYVLSDLASLYGTEEIPNRR 115

Query: 124 IDTLSIARR 132
             T+ +AR+
Sbjct: 116 FCTVRLARK 124


>gi|255013952|ref|ZP_05286078.1| hypothetical protein B2_08587 [Bacteroides sp. 2_1_7]
          Length = 192

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 80/184 (43%), Gaps = 21/184 (11%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65
           M+ + FD+ETTG+    + + +I    ++D   T  +F   +CP+ +     EAL++  +
Sbjct: 1   MKLLFFDLETTGIKYWRNGVHQISGEIVID-GVTKESFNFNVCPHSQCEIEEEALRICNV 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA---------HNAKFDVGFINAELQRINKD 116
           + E ++  P    ++ +F +  ++   ++           +NA FD  F+ A   + N D
Sbjct: 60  SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQ-NGD 118

Query: 117 PLDPS---------RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
               S          ++ T  + R++H  +     ++ +  GI I     H A  D  L 
Sbjct: 119 HYFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLT 178

Query: 168 SDVY 171
            ++Y
Sbjct: 179 KEIY 182


>gi|320161625|ref|YP_004174850.1| hypothetical protein ANT_22240 [Anaerolinea thermophila UNI-1]
 gi|319995479|dbj|BAJ64250.1| hypothetical protein ANT_22240 [Anaerolinea thermophila UNI-1]
          Length = 194

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 17/172 (9%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K   I  D ETTGL S  D IIEI  V           ++  + P  R   P+A+ +HGI
Sbjct: 22  KHNPIYLDTETTGL-SAQDEIIEISIVN----DNGEVVYESLVRPT-RPIPPDAIAVHGI 75

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++E ++    +  ++ E            + +N +FD+  +     R+     D  R  D
Sbjct: 76  SNEDVQKARPWHIVWQEVRPILLNAGVV-VIYNEEFDLRMMQQSHARLGLPWRDRFRTFD 134

Query: 126 TLSIARRKH----PSSR----NDLNSLCKRYGITI--SHRSKHGALLDSHLL 167
            + +    +    P  R    + L++  K  GIT+  +HR+    LL   LL
Sbjct: 135 LMKLYAEYYGEWDPKRRAYRYHSLDAAGKHCGITLPNAHRATADTLLTRALL 186


>gi|332076082|gb|EGI86548.1| exonuclease family protein [Streptococcus pneumoniae GA41301]
          Length = 140

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 27/134 (20%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D+E T   SK  +II++G V     E++D+  T+             N  E L  
Sbjct: 7   RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53

Query: 63  H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           H     G+TD+ L   P FS +  + +D    ++  ++AHN +FD   +   L     + 
Sbjct: 54  HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111

Query: 118 LDPSRIIDTLSIAR 131
            +P   +DT+ +A+
Sbjct: 112 RNPR--VDTVELAQ 123


>gi|319653481|ref|ZP_08007580.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2]
 gi|317394680|gb|EFV75419.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2]
          Length = 202

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 73/185 (39%), Gaps = 48/185 (25%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIG---------AVELLDYSKTNRTFQVFLCPN 51
           M  K KM  ++ D+ETTGL   +D IIE+            E+LD        +  +  +
Sbjct: 1   MRNKEKM-GLLLDVETTGLGPNSDEIIELALKLFSYRADTGEILDIKDKAAFLREPISKS 59

Query: 52  GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            + N   A ++HGI  E +  K  F  I  + + FF+  +    AHNA FD  F+     
Sbjct: 60  AKNNYSRAFRVHGIPYEAVSGK-CFDDIKIKKY-FFHADSV--FAHNASFDRSFL----- 110

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLC-------KRYGITISHRSKHGALLDS 164
                               R +P   N+L   C       K YG T    SK   LL S
Sbjct: 111 -------------------YRMYPEDINELKWYCTMRSVPWKEYGFT---DSKLLTLLQS 148

Query: 165 HLLSD 169
           H +++
Sbjct: 149 HQIAE 153


>gi|306819092|ref|ZP_07452806.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus
           mulieris ATCC 35239]
 gi|304648068|gb|EFM45379.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus
           mulieris ATCC 35239]
          Length = 305

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 8/129 (6%)

Query: 7   MRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLH 63
           MR+ V  D ET   + +      +G V      K + ++   L P+   +  +P  + +H
Sbjct: 3   MREFVAIDFETA--NEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWVH 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E ++D P +S I  +   F  ++    +AHN  FD G++ ++L  +      P+R 
Sbjct: 61  GITSEDVQDAPQWSDIADQVMTFIGDRPI--VAHNMAFD-GYVLSDLASLYGTEEIPNRR 117

Query: 124 IDTLSIARR 132
             T+ +AR+
Sbjct: 118 FCTVRLARK 126


>gi|167645985|ref|YP_001683648.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31]
 gi|167348415|gb|ABZ71150.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
          Length = 296

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 11/104 (10%)

Query: 5   NKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-----RKNSPE 58
            K+R  +F D+ETTGLD++ D IIE+  +    Y    R ++V    +G     R  S E
Sbjct: 37  EKVRVGLFVDVETTGLDTRRDEIIELAMIP-FRYGLVGRIYEVMEPFHGYRQPARPISAE 95

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
              L GI D  ++ +    SI  E    F    A  IAHNA FD
Sbjct: 96  ITALTGIDDAMVEGQ----SIDPEAVAAFAAPAALVIAHNASFD 135


>gi|226942744|ref|YP_002797817.1| DNA polymerase III subunit epsilon [Azotobacter vinelandii DJ]
 gi|226717671|gb|ACO76842.1| DNA polymerase III, epsilon subunit [Azotobacter vinelandii DJ]
          Length = 240

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 14/158 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKL 62
           +  R +V D+ETTGL+ + D ++ IGAV L++    + + Q F C   R  K+  E++ +
Sbjct: 40  HAQRFVVLDLETTGLNVERDVVLSIGAV-LIENDAIDLSRQ-FECTLRRRLKSVTESVLI 97

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDP 117
           HGI    L    + +     F ++    +  ++A +A FD   +   L+     R+    
Sbjct: 98  HGIAPSALAVGTAPAEALLRFMEYAG--DCVFLAFHAPFDQRMLGRALKDELGYRLRHPF 155

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR 155
           LD + +   L      HP     L+   + +G+ +S R
Sbjct: 156 LDVADLAPMLFPEALVHPGG---LDQWIQYFGLDMSRR 190


>gi|15598428|ref|NP_251922.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO1]
 gi|107102762|ref|ZP_01366680.1| hypothetical protein PaerPA_01003829 [Pseudomonas aeruginosa PACS2]
 gi|218890575|ref|YP_002439439.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa LESB58]
 gi|254236194|ref|ZP_04929517.1| hypothetical protein PACG_02159 [Pseudomonas aeruginosa C3719]
 gi|254241920|ref|ZP_04935242.1| hypothetical protein PA2G_02641 [Pseudomonas aeruginosa 2192]
 gi|9949354|gb|AAG06620.1|AE004746_4 probable nuclease [Pseudomonas aeruginosa PAO1]
 gi|126168125|gb|EAZ53636.1| hypothetical protein PACG_02159 [Pseudomonas aeruginosa C3719]
 gi|126195298|gb|EAZ59361.1| hypothetical protein PA2G_02641 [Pseudomonas aeruginosa 2192]
 gi|218770798|emb|CAW26563.1| probable nuclease [Pseudomonas aeruginosa LESB58]
          Length = 208

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 86/177 (48%), Gaps = 13/177 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEALKLHGITD 67
           I  D+ETT LD +   I+ IGAV L+   K       ++++ P    ++ E++++H +  
Sbjct: 33  ISLDLETTSLDPRRADILSIGAV-LVRRGKLVMGERLELYVEPPPSLDA-ESIRIHKLRR 90

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDT 126
             L+ +        +   F  ++    + +   FDV  +N  L Q +++   +PS  I +
Sbjct: 91  ADLEGQLQLEQALRQVLAFIGDRPL--LGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISS 148

Query: 127 LSIAR--RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           L   +  R  P +  DL  ++L +   + +S R  H AL D+  ++ ++++++ G +
Sbjct: 149 LYHRKVSRHFPDAHIDLRFDTLARALDVPVSGR--HTALGDAQAVALMFMRLLKGPA 203


>gi|329955851|ref|ZP_08296654.1| exonuclease [Bacteroides clarus YIT 12056]
 gi|328525231|gb|EGF52281.1| exonuclease [Bacteroides clarus YIT 12056]
          Length = 256

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 6/114 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTG +  +DRI+EI  +++  Y   N   +            EA  +HGI DE 
Sbjct: 10  VFFDLETTGTNINSDRIVEICYLKV--YPNGNEETKTMRINPEMHIPAEASAVHGIYDED 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122
           + D P+F  +     +  + +  +    N+ +FD+  +  E  R + D +D SR
Sbjct: 68  VADCPTFKEVARGIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRADVD-IDMSR 118


>gi|160689324|gb|ABX45520.1| polymerase C [Bacillus subtilis]
 gi|160689326|gb|ABX45521.1| polymerase C [Bacillus subtilis]
 gi|160689344|gb|ABX45530.1| polymerase C [Bacillus subtilis]
 gi|160689364|gb|ABX45540.1| polymerase C [Bacillus subtilis]
 gi|160689372|gb|ABX45544.1| polymerase C [Bacillus subtilis]
 gi|160689380|gb|ABX45548.1| polymerase C [Bacillus subtilis]
 gi|160689382|gb|ABX45549.1| polymerase C [Bacillus subtilis]
 gi|160689384|gb|ABX45550.1| polymerase C [Bacillus subtilis]
 gi|160689386|gb|ABX45551.1| polymerase C [Bacillus subtilis]
 gi|160689400|gb|ABX45558.1| polymerase C [Bacillus subtilis]
 gi|160689402|gb|ABX45559.1| polymerase C [Bacillus subtilis]
 gi|160689416|gb|ABX45566.1| polymerase C [Bacillus subtilis]
 gi|160689418|gb|ABX45567.1| polymerase C [Bacillus subtilis]
 gi|160689420|gb|ABX45568.1| polymerase C [Bacillus subtilis]
 gi|160689424|gb|ABX45570.1| polymerase C [Bacillus subtilis]
 gi|160689438|gb|ABX45577.1| polymerase C [Bacillus subtilis]
 gi|160689442|gb|ABX45579.1| polymerase C [Bacillus subtilis]
 gi|160689448|gb|ABX45582.1| polymerase C [Bacillus subtilis]
 gi|160689456|gb|ABX45586.1| polymerase C [Bacillus subtilis]
 gi|160689458|gb|ABX45587.1| polymerase C [Bacillus subtilis]
          Length = 259

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160
           D+GF+N   +++ +     + +IDTL + R  +P  +N  LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKKLLEVDKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+   + + +KM+   ++  I +  + NE+
Sbjct: 59  IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90


>gi|118577408|ref|YP_899648.1| exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus
           DSM 2379]
 gi|118504913|gb|ABL01395.1| Exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus
           DSM 2379]
          Length = 304

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 19/125 (15%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSP 57
           K +   +  D ETTG +  +D IIE+G V         + S+   T+  F  P  R   P
Sbjct: 42  KTRRVGLCIDTETTGFNFSDDVIIELGIVAFEYDAMTGEISRIVDTYSGFEDP-CRPLDP 100

Query: 58  EALKLHGITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           E   + GITD+ L     D  +   I S        Q +    HN KFD  F+       
Sbjct: 101 EVTAVTGITDDMLAGQSLDDAAVGKIVS--------QASLCFCHNCKFDRSFLERRFPEF 152

Query: 114 NKDPL 118
            K P 
Sbjct: 153 EKLPF 157


>gi|88797304|ref|ZP_01112894.1| putative DNA polymerase, exonuclease activity [Reinekea sp. MED297]
 gi|88780173|gb|EAR11358.1| putative DNA polymerase, exonuclease activity [Reinekea sp. MED297]
          Length = 192

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 17/179 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNS--PEALKLH 63
           R +V D+E TGL+++ D II  G V +++  +   +     +  P     S    +  +H
Sbjct: 16  RVLVLDLEMTGLNAQEDSIISAGWV-VIEQGRIELSLAGHQYFQPTAMMASDVSASAHIH 74

Query: 64  GITDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            ITD  L  + +P    +     D   ++   W+ H+A  D+ F+    QR+  D + PS
Sbjct: 75  MITDHLLEQQGQPLGHWLQRLNGDLLADR---WVFHHAPIDMAFLKMFSQRL--DIVLPS 129

Query: 122 RIIDTLSIARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             I+   +  +K  S     S+  L+    R    +    +H AL D+   +++Y+ +M
Sbjct: 130 VTIEDTVLLEQKRFSDLTLESQQQLSLTACRARHRLPAYRQHHALSDALATAELYLALM 188


>gi|255325307|ref|ZP_05366413.1| DNA polymerase III epsilon subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255297872|gb|EET77183.1| DNA polymerase III epsilon subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 443

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 6/103 (5%)

Query: 12  FDIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITD 67
            D     +++ ND    I +IGAV   +  +T+    +   P G ++  +  + +HGIT 
Sbjct: 98  LDFTAVDVETANDNWGSICQIGAVRFREGQETDSRSWLCTPPPGIEHFADINVSIHGITA 157

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           + +K  P+F  +  E +DF        +AHNA+FD   + + L
Sbjct: 158 DDVKGAPAFVEVSKELFDFLGGDV--LVAHNAQFDSTALRSAL 198


>gi|317050855|ref|YP_004111971.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
 gi|316945939|gb|ADU65415.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
          Length = 250

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTG D K   I+ IG V + L   +        + P  +  S +++ +HGIT  
Sbjct: 61  LALDFETTGFDPKRHGIVSIGLVPMSLQRIRCAEARHWIVKPRVQLES-QSIVVHGITHS 119

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTL 127
            +   P  + I  E  +         + H+   +  F++A L+ RI +    P  +IDT+
Sbjct: 120 DVATAPDLARILDELLEAMAGHV--MVVHHRGIERSFLDAALKARIGEGIQFP--VIDTM 175

Query: 128 SIARRKH 134
            +  R H
Sbjct: 176 ELEARLH 182


>gi|49079546|gb|AAT49904.1| PA3232 [synthetic construct]
          Length = 209

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 86/177 (48%), Gaps = 13/177 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEALKLHGITD 67
           I  D+ETT LD +   I+ IGAV L+   K       ++++ P    ++ E++++H +  
Sbjct: 33  ISLDLETTSLDPRRADILSIGAV-LVRRGKLVMGERLELYVEPPPSLDA-ESIRIHKLRR 90

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDT 126
             L+ +        +   F  ++    + +   FDV  +N  L Q +++   +PS  I +
Sbjct: 91  ADLEGQLQLEQALRQVLAFIGDRPL--LGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISS 148

Query: 127 LSIAR--RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           L   +  R  P +  DL  ++L +   + +S R  H AL D+  ++ ++++++ G +
Sbjct: 149 LYHRKVSRHFPDAHIDLRFDTLARALDVPVSGR--HTALGDAQAVALMFMRLLKGPA 203


>gi|325271479|ref|ZP_08137997.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. TJI-51]
 gi|324103369|gb|EGC00698.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. TJI-51]
          Length = 236

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 24/178 (13%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKT-NRTFQVFLCPNGRKNSPEAL 60
           + R +V D+ET+GL+   D+++ IGAV +    +D+++   RT Q    P  + N+  ++
Sbjct: 38  EQRWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLQR---PLLKTNA--SV 92

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD- 119
            +HG+    L      +    +  DF  +     +A +A FD       L R  K+ L  
Sbjct: 93  LIHGLGPSALAAGCEPAEALLDLLDFIGDSPV--LAFHAPFD----QRMLARALKESLGY 146

Query: 120 --PSRIIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              S  +D   +A   +P +      L+    R+G+ +  R  H A  D+ + +++ +
Sbjct: 147 RLQSPFLDVAELAPMLNPDTVLREAGLDDWVARFGLQVEER--HHASADAQVTAELVL 202


>gi|227875810|ref|ZP_03993936.1| possible DNA-directed DNA polymerase III [Mobiluncus mulieris ATCC
           35243]
 gi|227843558|gb|EEJ53741.1| possible DNA-directed DNA polymerase III [Mobiluncus mulieris ATCC
           35243]
          Length = 143

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 8/129 (6%)

Query: 7   MRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLH 63
           MR+ V  D ET   + +      +G V      K + ++   L P+   +  +P  + +H
Sbjct: 3   MREFVAIDFETA--NEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWVH 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E ++D P +S I  +   F  ++    +AHN  FD G++ ++L  +      P+R 
Sbjct: 61  GITSEDVQDAPQWSDIADQVMTFIGDRPI--VAHNMAFD-GYVLSDLASLYGTEEIPNRR 117

Query: 124 IDTLSIARR 132
             T+ +AR+
Sbjct: 118 FCTVRLARK 126


>gi|330897776|gb|EGH29195.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
          japonica str. M301072PT]
          Length = 50

 Score = 40.4 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 8  RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFL 48
          R IV D ETTG+  +   RI+EIG VEL+    T R F V+L
Sbjct: 9  RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYL 50


>gi|255658382|ref|ZP_05403791.1| putative DNA polymerase III subunit epsilon [Mitsuokella multacida
           DSM 20544]
 gi|260849714|gb|EEX69721.1| putative DNA polymerase III subunit epsilon [Mitsuokella multacida
           DSM 20544]
          Length = 241

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 11/175 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+E  G  +  D IIEIGA+ L   +     F+  + P    N      + G+T E 
Sbjct: 42  VSFDLEMAG--AFPDDIIEIGAIRLPLGNDKIEVFRRLIRPRTFINR-TVRDMTGLTKED 98

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLD---PSRIID 125
           L+DK +   I  EF DF + ++          D+  IN  L R+N K+  +     R +D
Sbjct: 99  LRDKSTLDVILPEFLDFVDPEDLVVGHAIGDNDLLSINLALIRMNHKNGTNIRFCPRYLD 158

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           T+ +A++  P  +  +L +L + +G     + KH A  D+ L S V ++ ++  S
Sbjct: 159 TVRLAQQLLPKRKKYNLIALLESFG--WHSKKKHRAFEDA-LASYVLLECLLEDS 210


>gi|254293981|ref|YP_003060004.1| exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC
           49814]
 gi|254042512|gb|ACT59307.1| Exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC
           49814]
          Length = 298

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 49/107 (45%), Gaps = 18/107 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR--TFQVFLCPNGRKNSP---EALKL 62
           R ++ D ETTGLD +   +IEI  V   +YS   +  TF   L    +  SP   E  KL
Sbjct: 41  RGLLIDTETTGLDYREAELIEIALVP-FEYSTEGKLVTFGKALDQFQQPKSPISEEITKL 99

Query: 63  HGITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            GIT+E +     D P+   +  E  D         IAHNA FD  F
Sbjct: 100 TGITNEMVAGQKIDIPAVEQLIKES-DLI-------IAHNAAFDRPF 138


>gi|292670219|ref|ZP_06603645.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648171|gb|EFF66143.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 179

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 18/173 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE 68
           +VFD ETTG  S +D ++ +  V+    +  +  +        RKN+ P+A K++ I+  
Sbjct: 6   LVFDTETTGFRS-DDEVLTLAVVDGAGATVVDGMYAPV-----RKNAWPDAEKINRISPA 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P   +  +E    FN+     + +N +FD+  +     RI     +P+R    L+
Sbjct: 60  MVVNCPPILAQQAELERMFNDPETLLVGYNIEFDIRLLAQSGIRIQ----NPNRHDVMLA 115

Query: 129 IAR-RKHPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +  RK P +R        L      Y         HGAL D+      Y KM
Sbjct: 116 FSEFRKVPDARRGGYRWWKLAECADYYRYDWGTTKAHGALADTLATLFCYQKM 168


>gi|317495208|ref|ZP_07953578.1| exonuclease [Gemella moribillum M424]
 gi|316914630|gb|EFV36106.1| exonuclease [Gemella moribillum M424]
          Length = 623

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 16/149 (10%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT+E L+DKPSF  +    +++   ++   + H  + D   +    Q I  +   PS
Sbjct: 59  LTGITNEILRDKPSFRKVSKVLYEYI--KDGILVCHGLQSDYLILKKHFQDIGIE-YSPS 115

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD----SHLLSDVYIKMMV 176
             +DT+ +AR   P+ S   L+ L     I  S  + H A++D    + LL  + +K+ +
Sbjct: 116 MSLDTVELARLFLPTQSSYRLSDLAASLNIY-SSDNYHNAVIDVKATAKLLETIALKIPL 174

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISL 205
                    K N ++  K  KK   NI+L
Sbjct: 175 IQ-------KENYNKICKLLKKVDSNIAL 196


>gi|313108556|ref|ZP_07794557.1| putative nuclease [Pseudomonas aeruginosa 39016]
 gi|310881059|gb|EFQ39653.1| putative nuclease [Pseudomonas aeruginosa 39016]
          Length = 208

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 87/177 (49%), Gaps = 13/177 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEALKLHGITD 67
           I  D+ETT LD +   I+ IGAV L+   K       ++++ P    ++ E++++H +  
Sbjct: 33  ISLDLETTSLDPRRADILSIGAV-LVRRGKLVMGERLELYVEPPPSLDA-ESIRIHKLRR 90

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDT 126
             L+ +        +   F  ++    + +   FDV  +N  L+++ ++   +PS  I +
Sbjct: 91  ADLEGQLQLEQALRQLLAFIGDRPL--LGYYLSFDVAVLNRHLRQLFDRQLHNPSIEISS 148

Query: 127 LSIAR--RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           L   +  R  P +  DL  ++L +   + +S R  H AL D+  ++ ++++++ G +
Sbjct: 149 LYHRKVSRHFPDAHIDLRFDTLARALDVPVSGR--HTALGDAQAVALMFMRLLKGPA 203


>gi|227832010|ref|YP_002833717.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262184134|ref|ZP_06043555.1| DNA polymerase III subunit epsilon [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453026|gb|ACP31779.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 516

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 31/149 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +   I+TTG+     R++ + A+ L    +  + F   + P      P    LHG++ E 
Sbjct: 75  VALTIQTTGIHPSTGRLLTVDALTLNAEGEIGQEFHAVINPG---EDPGPKHLHGLSAEE 131

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ------------------ 111
           ++   SFS +        + +    I H+A +  GFI +E +                  
Sbjct: 132 VQAGQSFSMLLKPLDRLIDGRT--LIVHDAPYTWGFIVSEARRAMTAAARQNRARNRNRG 189

Query: 112 -------RINKDPLDPSRIIDTLSIARRK 133
                  ++   P  P  I+DTL+ ARR+
Sbjct: 190 KGRRRRFKVGHVPT-PVAIVDTLATARRQ 217


>gi|213162305|ref|ZP_03348015.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 83

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 8/84 (9%)

Query: 158 HGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRI 216
           HGALLD+ +L++VY+ M  G + + F  +    R  ++ + T+  I     R + +F   
Sbjct: 2   HGALLDAQILAEVYLAMTGGQTSMTFAMEGETQR--QQGEATIQRIVRQASRLRVVFA-- 57

Query: 217 TKEELDEHDK---TIQTLGKNAIW 237
           ++EEL  H+     +Q  G + +W
Sbjct: 58  SEEELAAHESRLDLVQKKGGSCLW 81


>gi|329945803|ref|ZP_08293490.1| exonuclease [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528251|gb|EGF55229.1| exonuclease [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 258

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 76/213 (35%), Gaps = 37/213 (17%)

Query: 12  FDIETTGLDSKNDRIIEIGAV---ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           FD ETTG+D   DR++    V   E        ++   +L   G +    A  +HG+T E
Sbjct: 26  FDTETTGVDPGRDRLVTAALVWRAERRADGVRQQSVTTWLADPGVEIPEAASAVHGVTTE 85

Query: 69  FLKDKP-SFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRIN---------- 114
             + +    + + +E  D            I  NA +D+  +  EL R            
Sbjct: 86  RSRSEGRPVAEVLAEVSDHLVAAMTAGTPVIVFNASYDLTLMETELARHGLPTMRSRLGR 145

Query: 115 -----KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                 DPL   R +D     +R+       L  LC+ YG+ +     H A +D     D
Sbjct: 146 ELGPIADPLVLDRAVDRYRRGKRR-------LGDLCEVYGVHVDE-DLHTAEVDVAATLD 197

Query: 170 VYIKMMVGGSQIN-------FGFKTNEDRFFKE 195
           +   +     QI+         F+    R + E
Sbjct: 198 ILEALATAHPQISELGPDELVAFQAQAHRTWAE 230


>gi|187932792|ref|YP_001886212.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str.
           Eklund 17B]
 gi|187720945|gb|ACD22166.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str.
           Eklund 17B]
          Length = 309

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 12/170 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D         + + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIIEEVHHL-IKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125
              ++D+  F  ++ +   +FN+     IAHNA FD+  +   L+  N +   PS + I 
Sbjct: 58  PRMVQDELEFDKVWEKIKHYFNKNLV--IAHNASFDISVLRNTLELYNLEM--PSFQYIC 113

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           T+ ++R  + +  N  LN++    G    H   H AL D+   S++ + +
Sbjct: 114 TMKLSRNFYSNLDNARLNTVNNFLGYEFKH---HDALADAMACSNILLNI 160


>gi|32491084|ref|NP_871338.1| ribonuclease T [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
 gi|30173142|sp|Q8D2L9|RNT_WIGBR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|25166291|dbj|BAC24481.1| rnt [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 215

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 24/192 (12%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRT-----FQVFLCPNGRK 54
           KN+ R    +V D+ET G D   D ++EI  + L +D +   R      F +   P G  
Sbjct: 12  KNRFRGFYPVVIDVETAGFDPYRDALLEIAIITLRMDDNGFLRIDNKLHFNIIPTP-GLN 70

Query: 55  NSPEALKLHGITDEF------LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGF 105
               ALK + I D +      + ++ +   IF+       +Q+   A  +AHNA FD  F
Sbjct: 71  IKKSALKFNKI-DPYNPFRAAINERKAIKEIFNTVRLGIKKQSCSKAVVVAHNAYFDHSF 129

Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + + + R  I  +P       DT +++       +  L+  C   GI  ++   H AL D
Sbjct: 130 LMSAVDRSKIKYNPFHSFSTFDTATLSGLV--LGQTVLSKACIIAGIEFNNNYAHSALYD 187

Query: 164 SHLLSDVYIKMM 175
           S   ++++ +++
Sbjct: 188 SKKTAELFCEIV 199


>gi|313895399|ref|ZP_07828956.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976294|gb|EFR41752.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 219

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 7  MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
          M+ IV D+E   +  +        N  IIEIGAV L +       FQ ++CP        
Sbjct: 1  MKHIVVDLEMNPIGKEYKEIRRKLNGEIIEIGAVRLSEKFVQEDKFQCYVCPEYGLVKKH 60

Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFN 88
            +L GIT E +  +  F+  F  F D+  
Sbjct: 61 ITELTGITQEQVSGQRVFAESFKNFVDWIG 90


>gi|269120725|ref|YP_003308902.1| exonuclease RNase T and DNA polymerase III [Sebaldella termitidis
           ATCC 33386]
 gi|268614603|gb|ACZ08971.1| Exonuclease RNase T and DNA polymerase III [Sebaldella termitidis
           ATCC 33386]
          Length = 195

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 17/178 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV------ELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           + FD+ET G       ++ I A+      E+  + K     + +    G   +  A+ ++
Sbjct: 6   VFFDVETNG--KVGSSVLSISAIKVNFNGEIQKWEKVGEYDRFYFRNPGEAINMGAINVN 63

Query: 64  GITDEFLKDK-------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           G+TD+ L+ K         F      F+ F  +  A ++AHN KFD  FI   L+     
Sbjct: 64  GLTDDVLEKKREGTIYPVHFKDDIESFYSF-CQDTAHYVAHNIKFDRSFIPFMLKNQFDT 122

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            L+   I+    I           LN   + Y I     S H +L D  +   V+ KM
Sbjct: 123 MLENVEIVKA-GINEYYGTYKWPKLNECARFYNIPFDDSSLHESLYDVLITFRVFYKM 179


>gi|262275580|ref|ZP_06053389.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
 gi|262219388|gb|EEY70704.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
          Length = 239

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 17/155 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ET+GLD + D+++ +G VE+        + +  L      N  E+ ++H +  E 
Sbjct: 54  LVLDFETSGLDPEQDKVLSMGWVEIRQSQIRLSSARHILVNQPVLNGYESARIHHLRPET 113

Query: 70  LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINAELQRINKDPLDPSRII 124
           L++   S    FS+ +D    +    +AH +    +F   ++     +IN     P   +
Sbjct: 114 LRNCGVSEHHAFSQLFDVMKGKVI--VAHGSVIEKRFLARYLTLHYGQINL----PLVWL 167

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
           DTL I +      R  L  +C+ + ++ S R+ HG
Sbjct: 168 DTLKIEQ-----YREQLRQVCRDWRLS-SVRAAHG 196


>gi|254447860|ref|ZP_05061325.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
           HTCC5015]
 gi|198262640|gb|EDY86920.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
           HTCC5015]
          Length = 238

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIETTGL+++ D+I+ IG VE  D S+           N  + S  ++ +HGIT   
Sbjct: 51  LAIDIETTGLNAERDKIVSIGLVE-FDASRVYLASAKHWLVNPGELSDSSVIVHGITHSD 109

Query: 70  LKDKPSFSSIFSEF 83
           +   P+  ++  E 
Sbjct: 110 VSRAPTIDAVIPEL 123


>gi|118602011|ref|YP_908711.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
 gi|118614749|ref|YP_908532.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
 gi|134044854|ref|YP_001102265.1| putative exonuclease [Yersinia pestis biovar Orientalis str. IP275]
 gi|134047136|ref|YP_001102053.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|165937990|ref|ZP_02226550.1| exonuclease, Ycg4D [Yersinia pestis biovar Orientalis str. IP275]
 gi|229516080|ref|ZP_04405530.1| hypothetical protein VCC_000094 [Vibrio cholerae RC9]
 gi|237810081|ref|YP_002894521.1| exonuclease family protein [Escherichia coli]
 gi|237810261|ref|YP_002894700.1| exonuclease family protein [Salmonella enterica]
 gi|300927181|ref|ZP_07142918.1| exonuclease [Escherichia coli MS 182-1]
 gi|309796486|ref|ZP_07690894.1| exonuclease [Escherichia coli MS 145-7]
 gi|118596840|dbj|BAF38144.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
 gi|118597020|dbj|BAF38323.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
 gi|133905055|gb|ABO41070.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|133905388|gb|ABO42150.1| putative exonuclease [Yersinia pestis biovar Orientalis str. IP275]
 gi|165914013|gb|EDR32630.1| exonuclease, Ycg4D [Yersinia pestis biovar Orientalis str. IP275]
 gi|229346860|gb|EEO11828.1| hypothetical protein VCC_000094 [Vibrio cholerae RC9]
 gi|229561745|gb|ACQ77947.1| exonuclease family protein [Salmonella enterica]
 gi|229561937|gb|ACQ78138.1| exonuclease family protein [Escherichia coli]
 gi|300416848|gb|EFK00159.1| exonuclease [Escherichia coli MS 182-1]
 gi|308119991|gb|EFO57253.1| exonuclease [Escherichia coli MS 145-7]
 gi|324008196|gb|EGB77415.1| exonuclease [Escherichia coli MS 57-2]
 gi|327536618|gb|AEA95451.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Dublin]
          Length = 289

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 14/99 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---SPEALKLH 63
           +  +V D ETTGL  + D++IE+   ++           V LC   R      P+A+ +H
Sbjct: 104 LEPLVLDTETTGLGER-DQVIELAVTDIRGA--------VLLCTRLRPTVEIDPQAMGVH 154

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           GIT+  L ++P+++ +        + ++   +  N+ FD
Sbjct: 155 GITETELSNEPTWTQVAPALARLLSGRHL--VIFNSSFD 191


>gi|70732988|ref|YP_262761.1| exonuclease [Pseudomonas fluorescens Pf-5]
 gi|68347287|gb|AAY94893.1| exonuclease [Pseudomonas fluorescens Pf-5]
          Length = 235

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R +V D+ETTGL+   D+++ IGAV + D +   ++ F+  L   G K SP  L +HG
Sbjct: 38  EQRWVVVDVETTGLNLNRDQVLSIGAVVIEDGAIDFSQQFERTLQRQGHKLSPSVL-IHG 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           +    +           +F +F    ++  +A +A FD
Sbjct: 97  LGPSAIAAGCDPVEALLDFMEFVG--DSPLLAFHAPFD 132


>gi|329961134|ref|ZP_08299389.1| exonuclease [Bacteroides fluxus YIT 12057]
 gi|328532072|gb|EGF58882.1| exonuclease [Bacteroides fluxus YIT 12057]
          Length = 256

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 14/118 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + FD+ETTG +  +DRI+EI  +++     + SKT R       P       E+  +HGI
Sbjct: 10  VFFDLETTGTNINSDRIVEICYLKVYPNGNEESKTMRINPEMHIP------AESSAVHGI 63

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122
            DE + D P+F  +  +  +  + +  +    N+ +FD+  +  E  R   D +D SR
Sbjct: 64  YDEDIADCPTFKEVARKIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVD-IDMSR 118


>gi|209693722|ref|YP_002261650.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238]
 gi|208007673|emb|CAQ77784.1| putative exonuclease [Aliivibrio salmonicida LFI1238]
          Length = 238

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 11/187 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGLD+  + II IG V         R  Q +           ++ +HGIT   
Sbjct: 49  VALDFETTGLDANQNSIISIGLVPFTLERIRCRESQHWFVKAQDSLEENSVVIHGITHSD 108

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128
           L+  P    I  +  D    +    + H  K +  F +  L+  I +  + P  I+DT+ 
Sbjct: 109 LQGAPDLRRILEKVLDALAGKVV--VVHYRKIERDFFDINLRNLIGEGIVFP--IVDTMQ 164

Query: 129 I-ARRKHPSSRNDLNSLCKRYGITI---SHRSKHG--ALLDSHLLSDVYIKMMVGGSQIN 182
           I    +   ++  +N +  +   +I   + RS++G  A    H L+D      +  +QI 
Sbjct: 165 IEGDFQQEQAKGLINWIKGKRPESIRLANSRSRYGLPAYAPHHALTDAIATAELFQAQIR 224

Query: 183 FGFKTNE 189
           + F  N+
Sbjct: 225 YHFSEND 231


>gi|325956410|ref|YP_004291822.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC]
 gi|325332975|gb|ADZ06883.1| DNA polymerase III alpha chain [Lactobacillus acidophilus 30SC]
 gi|327183226|gb|AEA31673.1| DNA polymerase III subunit alpha [Lactobacillus amylovorus GRL
           1118]
          Length = 177

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++H IT E +K+ P+ + ++ +    + +      AHNA+FD   +   L R N    +
Sbjct: 50  IQVHQITAEDVKNAPTMAEVWPKIKGLY-QPGMLVAAHNARFDTNVMRQSLARYNIS--E 106

Query: 120 PSR-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P   +IDTL+ +++  P   N  L+++     + + H   H AL DS   + + I
Sbjct: 107 PHYLVIDTLATSKKFEPELPNHKLDTVSDALDVELWHH--HNALSDSEACAGILI 159


>gi|300727261|ref|ZP_07060677.1| exonuclease [Prevotella bryantii B14]
 gi|299775499|gb|EFI72093.1| exonuclease [Prevotella bryantii B14]
          Length = 163

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HG+  E   D P F  ++++       +N   +AHN  FD G + A  +    D  D 
Sbjct: 53  QVHGLCHEDTDDAPVFPKVWAQIEPLI--ENLPLVAHNKPFDEGCLKAVFRVYQMDYPD- 109

Query: 121 SRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
               DTL ++RR  P   N  L ++    G  +     H AL D+
Sbjct: 110 YEFYDTLCVSRRVLPDLENHQLQTVAAACGYCL--EDHHHALADA 152


>gi|172051553|emb|CAQ34948.1| hypothetical protein [Photobacterium damselae subsp. piscicida]
          Length = 302

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 9/103 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64
           ++ D ETTGL + ++ IIE+G V++L      R   +     L  +  K  PE + +L G
Sbjct: 53  VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELITELTG 112

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITD+ ++ +     +    W      +   +AHNA+FD  F  
Sbjct: 113 ITDDMVQGQ-HIDDLLVASW---LSDDPLVVAHNAQFDRPFFE 151


>gi|237640346|ref|YP_002891201.1| exonuclease family protein [Escherichia coli]
 gi|229561565|gb|ACQ77768.1| exonuclease family protein [Escherichia coli]
          Length = 289

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 12/76 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---SPEALKLH 63
           +  +V D ETTGL  + D++IE+   ++           V LC   R      P+A+ +H
Sbjct: 104 LEPLVLDTETTGLGER-DQVIELAVTDIRGA--------VLLCTRLRPTVEIDPQAMGVH 154

Query: 64  GITDEFLKDKPSFSSI 79
           GIT+  L ++P+++ +
Sbjct: 155 GITETELSNEPTWTQV 170


>gi|167461432|ref|ZP_02326521.1| hypothetical protein Plarl_02538 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 119

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 8/97 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + ++ D ETTG++  ++ I++I  ++L D +    +    +CP       EA  +HGI
Sbjct: 31  KSKYLILDTETTGIEYDSE-IVDIAIIDL-DKNLIFASLVKPICPIPE----EATMIHGI 84

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           T+E + D PS+  ++++     + +    + +NA FD
Sbjct: 85  TNEMVADAPSWLEVWAQVQKLLSGKTL--LIYNADFD 119


>gi|170017004|ref|YP_001727923.1| Rad3-related DNA helicase [Leuconostoc citreum KM20]
 gi|169803861|gb|ACA82479.1| Rad3-related DNA helicase [Leuconostoc citreum KM20]
          Length = 801

 Score = 40.4 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 15/177 (8%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRT---FQVFLCPNGRKNSPEALKLHGI 65
           +V D+ETTG   +K  RII+IG    + + K  R    F+ F+ P  +       +L  I
Sbjct: 8   VVVDLETTGQSVAKGGRIIQIG----MTFIKNRRIIDHFESFVNP-AQPIDRNIQQLTHI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +K+ P F  I     +   +     IAHN  FD  ++N E  R     L  +  ID
Sbjct: 63  SQKEVKNAPYFEEIAPVIQNLLTDTVI--IAHNVNFDYPYLNDEFARTGFPELT-NAAID 119

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           T+ +A+   P++    L  L     IT++  + H A  D+H  + +++ +     Q+
Sbjct: 120 TVQLAQILLPTAPGYRLLDLTTYLNITLN--NAHRANADAHATALLFLSLWQRAEQL 174


>gi|92113107|ref|YP_573035.1| DNA polymerase III subunit epsilon [Chromohalobacter salexigens DSM
           3043]
 gi|91796197|gb|ABE58336.1| Exonuclease [Chromohalobacter salexigens DSM 3043]
          Length = 241

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 23/171 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  D+ETTGLD +   I+ IG V  +L       R + +   P  R  S  ++  H IT 
Sbjct: 52  MAMDMETTGLDEQRHAIVSIGLVPFDLRRIRMAQRRYWIVRPP--RPLSERSITFHHITH 109

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  P    I  E  +         + H    +  F+NA ++    + +    +IDT+
Sbjct: 110 TEIEQAPDLDEILDELLEAMAGHVM--VVHYRHIERTFLNAAVKARRGEGIH-FPVIDTM 166

Query: 128 SIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           S+  R H              P +   L     RYG+       H AL+D+
Sbjct: 167 SLEARLHRQPLWARFRRWMGRPPASIRLPDSRTRYGLPPY--QAHHALIDA 215


>gi|300836940|ref|YP_003754017.1| putative exonuclease Ycg4D [Klebsiella pneumoniae]
 gi|242205350|gb|ACS75438.1| putative exonuclease Ycg4D [Klebsiella pneumoniae]
          Length = 233

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 12/76 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---SPEALKLH 63
           +  +V D ETTGL  + D++IE+   ++           V LC   R      P+A+ +H
Sbjct: 104 LEPLVLDTETTGLGER-DQVIELAVTDIRG--------AVLLCTRLRPTVEIDPQAMGVH 154

Query: 64  GITDEFLKDKPSFSSI 79
           GIT+  L ++P+++ +
Sbjct: 155 GITETELSNEPTWTQV 170


>gi|153819833|ref|ZP_01972500.1| ribonuclease T [Vibrio cholerae NCTC 8457]
 gi|126509614|gb|EAZ72208.1| ribonuclease T [Vibrio cholerae NCTC 8457]
          Length = 151

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 13/128 (10%)

Query: 59  ALKLHGITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAE 109
           AL+  GI D F  L+   S      E +     EQ A        +AHNA FD  F+ A 
Sbjct: 1   ALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAA 60

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + + P  P    DT +++       +  L   CK  G+   +R  H AL D+   
Sbjct: 61  SERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKT 118

Query: 168 SDVYIKMM 175
           ++++  ++
Sbjct: 119 AELFCTIV 126


>gi|121587354|ref|ZP_01677125.1| ribonuclease T [Vibrio cholerae 2740-80]
 gi|121548437|gb|EAX58497.1| ribonuclease T [Vibrio cholerae 2740-80]
          Length = 190

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 13/128 (10%)

Query: 59  ALKLHGITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAE 109
           AL+  GI D F  L+   S      E +     EQ A        +AHNA FD  F+ A 
Sbjct: 40  ALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAA 99

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + + P  P    DT +++       +  L   CK  G+   +R  H AL D+   
Sbjct: 100 SERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKT 157

Query: 168 SDVYIKMM 175
           ++++  ++
Sbjct: 158 AELFCTIV 165


>gi|262382001|ref|ZP_06075139.1| exonuclease [Bacteroides sp. 2_1_33B]
 gi|262297178|gb|EEY85108.1| exonuclease [Bacteroides sp. 2_1_33B]
          Length = 192

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 80/184 (43%), Gaps = 21/184 (11%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65
           M+ + FD+ETTG+    + + +I    ++D   T  +F   +CP+ +     EAL++  +
Sbjct: 1   MKLLFFDLETTGIKYWRNGVHQISGEIVID-GVTKESFNFNVCPHPQCEIEEEALRICNV 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA---------HNAKFDVGFINAELQRINKD 116
           + E ++  P    ++ +F +  ++   ++           +NA FD  F+ A   + N D
Sbjct: 60  SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQ-NGD 118

Query: 117 PLDPS---------RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
               S          ++ T  + R++H  +     ++ +  GI I     H A  D  L 
Sbjct: 119 HYFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLT 178

Query: 168 SDVY 171
            ++Y
Sbjct: 179 KEIY 182


>gi|261749200|ref|YP_003256885.1| DNA polymerase III epsilon chain [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497292|gb|ACX83742.1| putative DNA polymerase III epsilon chain [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 255

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 8/159 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FDIE TG++   DRIIEI  +++  +   N+  + +L        P++  +HGI DE + 
Sbjct: 12  FDIEATGVNIGKDRIIEISILKI--FPNGNQEDKTWLIFPEIPIPPKSTAIHGIKDEDVA 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQR--INKDPLDPSRIIDTLS 128
            +  F  +    +     +NA+   +N+ +FD+  +  E+ R  I+ D +   + ID   
Sbjct: 70  GQLPFKDVAIHIFRMI--ENADLAGYNSNRFDIPILVEEMLRAGISFD-IKKHKTIDVQV 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           I  +  P + +       +  +  +H SK        +L
Sbjct: 127 IFHKMEPRTLSAAYKYYCKKNLIKAHSSKADTFATYEIL 165


>gi|164688494|ref|ZP_02212522.1| hypothetical protein CLOBAR_02139 [Clostridium bartlettii DSM
          16795]
 gi|164602907|gb|EDQ96372.1| hypothetical protein CLOBAR_02139 [Clostridium bartlettii DSM
          16795]
          Length = 252

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 12/98 (12%)

Query: 7  MRKIVFDIE-TTGLDSKNDR----------IIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
          M  I+FD+E   G D  N++          II+IGA++L        TF  ++     K+
Sbjct: 1  MNYIIFDLEFNQGFDRLNNKTVSNAKCPFEIIQIGAIKLDSELNILDTFSSYIKSEIYKD 60

Query: 56 -SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA 92
            P   K+ GIT+  LK+ PSF  ++ +F  F   +N+
Sbjct: 61 IHPFVKKMTGITNSNLKNAPSFKEVYEDFLKFIGIKNS 98


>gi|123442599|ref|YP_001006576.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089560|emb|CAL12409.1| exodeoxyribonuclease [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 221

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 23/167 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETT  +     ++EI +V+++D  K       F+ P     S EA+ +H IT+  +
Sbjct: 5   VIDTETTSFEGS---VLEIASVDIVD-GKICNPMSDFVKPT-EAISFEAMAIHHITENMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P    +  ++ D        ++AHNA FD            K P   +  + TL ++
Sbjct: 60  ADAPLIEHVIDKYLD-----ADIYVAHNAAFDR----------EKLPQITAPWVCTLKLS 104

Query: 131 RRKHPSSRNDLNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKM 174
           R+  P   +    L   +G+          H AL D ++ +++ + M
Sbjct: 105 RKLWPEGGHGNQYLRYAHGLNPDVPEGLHAHRALYDCYVTAELLLHM 151


>gi|153005992|ref|YP_001380317.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
 gi|152029565|gb|ABS27333.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
          Length = 213

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 79/190 (41%), Gaps = 19/190 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDE 68
             D+ET GLD+K D ++ IG V +     +    ++  + P+ G + +  ++  H +   
Sbjct: 31  AIDVETGGLDAKRDPLLAIGMVPVRAGRIRLGECYRTLVRPHAGTRITSASVTAHQLVSN 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127
             +  P    +  E      E     + H+A  DV F+  +  R     P  P  ++DT 
Sbjct: 91  DFEAAPPLGDVLPEVERRARE--GALLFHHAAIDVAFLRRDFARTGLTWPSCP--VVDTA 146

Query: 128 SI----ARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +    A+ + P+   D   LN    R  + +     H AL D+   +++++ +     +
Sbjct: 147 RLLVRHAQLRDPTRPRDHIALNLSVARAELGLPEYQAHDALSDAIATAELFLAL-----R 201

Query: 181 INFGFKTNED 190
           +  G +T  D
Sbjct: 202 MALGARTLRD 211


>gi|317485586|ref|ZP_07944462.1| exonuclease [Bilophila wadsworthia 3_1_6]
 gi|316923123|gb|EFV44333.1| exonuclease [Bilophila wadsworthia 3_1_6]
          Length = 169

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT + ++  P+F   + +   F  +     +AHNA FD   + A  Q  N   L   
Sbjct: 54  VHGITWKDVQGSPTFLEFWPQMASFL-QGVTHLVAHNAPFDRRVLEACCQS-NGIALPDL 111

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154
             + TL  +RRK     + L+++C+  GI + H
Sbjct: 112 PFVCTLRESRRKLKLPSHKLDAVCRCCGIPLDH 144


>gi|188588313|ref|YP_001920971.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498594|gb|ACD51730.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 309

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 12/170 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D  K        + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKD-GKIIEEVHHLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125
              ++D+  F  ++ +   +FNE     IAHNA FD+  +   L+  N +   PS + I 
Sbjct: 58  PRMVQDELEFDKVWEKIKHYFNENLV--IAHNASFDISVLRNTLELYNIEM--PSFQYIC 113

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           T+ +++  + +  N  LN++    G    H   H AL D+    ++ + +
Sbjct: 114 TMKLSKNFYSNLDNARLNTVNNFLGYEFKH---HDALADAMACGNILLNI 160


>gi|183179408|ref|ZP_02957619.1| ribonuclease T [Vibrio cholerae MZO-3]
 gi|183012819|gb|EDT88119.1| ribonuclease T [Vibrio cholerae MZO-3]
          Length = 191

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 13/128 (10%)

Query: 59  ALKLHGITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAE 109
           AL+  GI D F  L+   S      E +     EQ A        +AHNA FD  F+ A 
Sbjct: 41  ALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAA 100

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + + P  P    DT +++       +  L   CK  G+   +R  H AL D+   
Sbjct: 101 SERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKT 158

Query: 168 SDVYIKMM 175
           ++++  ++
Sbjct: 159 AELFCTIV 166


>gi|323493392|ref|ZP_08098514.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
 gi|323312215|gb|EGA65357.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
          Length = 239

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 32/183 (17%)

Query: 4   KNKMRKIVF---DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEA 59
           K  + +++F   D ETTGL S +D II IG V   L+    N+     + P  ++ + ++
Sbjct: 41  KTPLEEVMFLAMDFETTGLSSDDDDIITIGTVPFNLNRIYINQAQHWTVKPR-KQLAEDS 99

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFIN-AELQRINKD 116
           + +HGIT   + D P  S I+ +      EQ A    + H  + +  F + A + RI + 
Sbjct: 100 VVIHGITHSDVLDAPDLSGIYQQVL----EQMAGKIMVVHYQRIEREFFDKALMARIKEG 155

Query: 117 PLDPSRIIDTLSI---------------ARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              P  ++DT+ I                R + P S   L +   RYG+ +   + H AL
Sbjct: 156 IEFP--VVDTMQIETTLQQKLKGGILNKIRGRKPESVR-LGASRARYGLPL--YTPHHAL 210

Query: 162 LDS 164
            D+
Sbjct: 211 TDA 213


>gi|251779366|ref|ZP_04822286.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243083681|gb|EES49571.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 309

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 12/170 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D  K        + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKD-GKIIEEVHHLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125
              ++D+  F  ++ +   +FNE     IAHNA FD+  +   L+  N +   PS + I 
Sbjct: 58  PRMVQDELEFDKVWEKIKHYFNENLV--IAHNASFDISVLRNTLELYNIEM--PSFQYIC 113

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           T+ +++  + +  N  LN++    G    H   H AL D+    ++ + +
Sbjct: 114 TMKLSKNFYSNLDNARLNTVNNFLGYEFKH---HDALADAMACGNILLNI 160


>gi|220913055|ref|YP_002488364.1| exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
 gi|219859933|gb|ACL40275.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
          Length = 336

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGIT   +  +  F  +F E   F  +      AHNA FD+G I + L+ ++  P  
Sbjct: 55  VRIHGITAADVAGRSRFGDLFPEIGAFIGDD--VLAAHNAAFDLGVIRSALE-VSGLPGP 111

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               + T+ ++RR +    N L    +  G+ +     H A  D+   + + I +
Sbjct: 112 AYDYVCTVMLSRRCYSLVSNSLPFAAEEAGVPLLR--HHDAAEDARACAGILIDI 164


>gi|332687228|ref|YP_004457002.1| exonuclease [Melissococcus plutonius ATCC 35311]
 gi|332371237|dbj|BAK22193.1| exonuclease [Melissococcus plutonius ATCC 35311]
          Length = 176

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 10/116 (8%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HGI  E + D P F  I+     FF + N   +AHNA FD   + + L    K P  
Sbjct: 50  IQIHGIHPEDVTDAPKFPEIWQGIQLFF-QLNQLIVAHNAAFDCNVLASCLNYY-KLPQP 107

Query: 120 PSRIIDTLSIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               + T+  +R   R+ P+ +  L+++C+   I ++H   H AL DS   + + +
Sbjct: 108 NYLSLCTVKTSRKFFRELPNHK--LDTICRALNIPLNH---HNALDDSRACAKILL 158


>gi|302329867|gb|ADL20061.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275553|gb|ADO25452.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis I19]
          Length = 369

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 28/146 (19%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +   I+T+G+     R+I + AV   +  +    F   + P    ++P    LHG++ E 
Sbjct: 44  VALSIQTSGIHPSTSRLITVDAVTFTEDGEETDHFHAVINPG---DNPGPFHLHGLSREE 100

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-------------------- 109
           +     FS I        + +    I HN  +  GF+ +E                    
Sbjct: 101 IAQGKKFSHILKPLGKLIDGRT--LILHNTPYTWGFLVSESRRAMSAAARANRNRYRHRN 158

Query: 110 --LQRINKDPLDPSRIIDTLSIARRK 133
              QR+   P  P  I+DTL+ ARR+
Sbjct: 159 RRRQRVGHIP-RPRMIVDTLATARRQ 183


>gi|150007459|ref|YP_001302202.1| hypothetical protein BDI_0810 [Parabacteroides distasonis ATCC
           8503]
 gi|298375435|ref|ZP_06985392.1| exonuclease [Bacteroides sp. 3_1_19]
 gi|301310540|ref|ZP_07216479.1| exonuclease [Bacteroides sp. 20_3]
 gi|149935883|gb|ABR42580.1| hypothetical protein BDI_0810 [Parabacteroides distasonis ATCC
           8503]
 gi|298267935|gb|EFI09591.1| exonuclease [Bacteroides sp. 3_1_19]
 gi|300832114|gb|EFK62745.1| exonuclease [Bacteroides sp. 20_3]
          Length = 192

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 80/184 (43%), Gaps = 21/184 (11%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65
           M+ + FD+ETTG+    + + +I    ++D   T  +F   +CP+ +     EAL++  +
Sbjct: 1   MKLLFFDLETTGIKYWRNGVHQISGEIVID-GVTKESFNFNVCPHPQCEIEEEALRICNV 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA---------HNAKFDVGFINAELQRINKD 116
           + E ++  P    ++ +F +  ++   ++           +NA FD  F+ A   + N D
Sbjct: 60  SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQ-NGD 118

Query: 117 PLDPS---------RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
               S          ++ T  + R++H  +     ++ +  GI I     H A  D  L 
Sbjct: 119 NYFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLT 178

Query: 168 SDVY 171
            ++Y
Sbjct: 179 KEIY 182


>gi|117920025|ref|YP_869217.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. ANA-3]
 gi|117612357|gb|ABK47811.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. ANA-3]
          Length = 228

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 18/186 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D+E TGL+   D+I+ IG V + + +      Q  L    + +  ++  +HGI D  
Sbjct: 43  IAMDLEMTGLNPLQDQILSIGLVPIENGAIPLMGAQQKLV-QIQGSVGQSATIHGILDNH 101

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLS 128
           L +  +     +  W     +    +AH++  D  F+  ++  I ++  + P+  IDTL 
Sbjct: 102 LTEAVTIEEAMA--WFVAQTRGHVLVAHHSPLDCRFLQQDILSIYHQAIVLPA--IDTLL 157

Query: 129 IAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---MVGG 178
           + +    R+H   +     L +  +RYG+ I     H AL D+    ++ +     M G 
Sbjct: 158 LEKHRLLREHSVLKEGSLRLGACRERYGLPI--YGAHSALTDALACGELLLAQVASMGGA 215

Query: 179 SQINFG 184
            ++  G
Sbjct: 216 DELKVG 221


>gi|302205313|gb|ADL09655.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis C231]
          Length = 348

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 28/146 (19%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +   I+T+G+     R+I + AV   +  +    F   + P    ++P    LHG++ E 
Sbjct: 23  VALSIQTSGIHPSTSRLITVDAVTFTEDGEETDHFHAVINPG---DNPGPFHLHGLSREE 79

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-------------------- 109
           +     FS I        + +    I HN  +  GF+ +E                    
Sbjct: 80  IAQGKKFSHILKPLGKLIDGRT--LILHNTPYTWGFLVSESRRAISAAARANRNRYRHRN 137

Query: 110 --LQRINKDPLDPSRIIDTLSIARRK 133
              QR+   P  P  I+DTL+ ARR+
Sbjct: 138 RRRQRVGHIP-RPRMIVDTLATARRQ 162


>gi|163787271|ref|ZP_02181718.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium
           ALC-1]
 gi|159877159|gb|EDP71216.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium
           ALC-1]
          Length = 1128

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 29/157 (18%)

Query: 10  IVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPE 58
           ++FD ETTGL  + D          R I+I A +L D        Q +L  P G     +
Sbjct: 3   LIFDTETTGLPKRWDAPITDTDNWPRCIQI-AWQLHDAMGNCIEHQDYLVKPEGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KD 116
           A K+HGI+ E  +++  S S +  +F    ++     +  N KFD+  + AE  R +  +
Sbjct: 62  AEKIHGISTELAQEQGVSLSEVLEKFNTALSKTKF-VVGQNVKFDLNIMGAEFVREDVAN 120

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCK----RYG 149
           PL    ++DT +    +H +      SLC+    RYG
Sbjct: 121 PLQELPVLDTCT----EHTA------SLCQIPGGRYG 147


>gi|119960742|ref|YP_948285.1| DNA polymerase III epsilon subunit [Arthrobacter aurescens TC1]
 gi|119947601|gb|ABM06512.1| putative DNA polymerase III epsilon subunit [Arthrobacter aurescens
           TC1]
          Length = 336

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 5/114 (4%)

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGI  E +  +P F  +F E   F  +      AHNA FD+G I + L+ ++      
Sbjct: 56  RIHGIRAEDVAGRPRFGELFPEIGAFIGDD--VLAAHNAAFDLGVIRSGLE-VSGLAGPA 112

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              + T+ ++RR +    N L    +  G+ + +   H A  D+   + + + +
Sbjct: 113 YDYVCTVMLSRRCYSLVSNSLPYAAEEAGVPLVNH--HDAAEDARACAGILVDI 164


>gi|312128938|ref|YP_003996278.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella
           byssophila DSM 17132]
 gi|311905484|gb|ADQ15925.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella
           byssophila DSM 17132]
          Length = 303

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 11/125 (8%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI  E + DKP F+ ++SE       +N   IAHNA FD+  +   L+     P  P+
Sbjct: 53  IHGIRPEHVADKPEFNELWSEIKPLV--ENKFLIAHNAGFDISVLRRTLEAYQL-PF-PT 108

Query: 122 RIIDTLSIARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVG 177
                  I  +K        DL +LCK   I + H   H A  DS   +++ +K   + G
Sbjct: 109 LNYSCSYIFSKKVWQGLPAYDLKTLCKVNNINLKH---HRAGADSKATAELTLKAFEIAG 165

Query: 178 GSQIN 182
            S I+
Sbjct: 166 VSSID 170


>gi|168494862|ref|ZP_02719005.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|168494874|ref|ZP_02719017.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|168495024|ref|ZP_02719167.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575147|gb|EDT95675.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575215|gb|EDT95743.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575301|gb|EDT95829.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
          Length = 307

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT E + D P+F  +     DF        +AH A+FD+G +    Q+   D  D  
Sbjct: 54  IHGITPEDVLDSPTFPEVRKAIVDFIGSDIV--VAHFAQFDMGALKDVYQKYELD-FDNI 110

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
             I +  +A+   P   N  L  L K   I + H   H AL D+
Sbjct: 111 EYICSYRLAKVALPGQLNYKLKRLAKNLNIELDH---HNALSDA 151


>gi|168490120|ref|ZP_02714319.1| exonuclease family protein [Streptococcus pneumoniae SP195]
 gi|183571500|gb|EDT92028.1| exonuclease family protein [Streptococcus pneumoniae SP195]
          Length = 307

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT E + D P+F  +     DF        +AH A+FD+G +    Q+   D  D  
Sbjct: 54  IHGITPEDVLDSPTFPEVRKAIVDFIGSDIV--VAHFAQFDMGALKDVYQKYELD-FDNI 110

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
             I +  +A+   P   N  L  L K   I + H   H AL D+
Sbjct: 111 EYICSYRLAKVALPGQLNYKLKRLAKNLNIELDH---HNALSDA 151


>gi|22536702|ref|NP_687553.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus agalactiae 2603V/R]
 gi|25010639|ref|NP_735034.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus agalactiae NEM316]
 gi|22533544|gb|AAM99425.1|AE014216_1 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus agalactiae 2603V/R]
 gi|23094993|emb|CAD46214.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 835

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L   P F  +    +     ++  ++AHN KFD   +  +L     +   P 
Sbjct: 73  LTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTPR 130

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDT+ +++  +P   +  L +L +   I ++    H A+ D+   + ++IK+
Sbjct: 131 --IDTVELSQVFYPCLEKYSLGALAESLNIELT--DAHTAIADARATAQLFIKL 180


>gi|77405453|ref|ZP_00782546.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae H36B]
 gi|77175946|gb|EAO78722.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae H36B]
          Length = 835

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L   P F  +    +     ++  ++AHN KFD   +  +L     +   P 
Sbjct: 73  LTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTPR 130

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDT+ +++  +P   +  L +L +   I ++    H A+ D+   + ++IK+
Sbjct: 131 --IDTVELSQVFYPCLEKYSLGALAESLNIELT--DAHTAIADARATAQLFIKL 180


>gi|153933783|ref|YP_001382659.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935123|ref|YP_001386211.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str.
           Hall]
 gi|152929827|gb|ABS35327.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. ATCC 19397]
 gi|152931037|gb|ABS36536.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. Hall]
          Length = 309

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +FN  N   IAHNA FD+  + + L+  N   +     I T
Sbjct: 58  PHMVQDELEFDKIWGKIKGYFN--NNLVIAHNASFDMSVLRSTLKLYN-IKMPSFEYICT 114

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G    +   H AL D+   S++ I +
Sbjct: 115 MKLSKNFYSNIDNARLNTVNNFLGYKFKY---HDALADAMACSNILINI 160


>gi|306836447|ref|ZP_07469422.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
 gi|304567666|gb|EFM43256.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
          Length = 454

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 15/113 (13%)

Query: 10  IVFDIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEA-LKLH 63
           +  D+ET      ND    I +IGAV   D  +T    Q +LC  P G ++  E  + +H
Sbjct: 111 VAVDVETA-----NDNWGSICQIGAVRYRDGGETAS--QSWLCTPPPGLEHFAEINISIH 163

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           GIT   ++    F++  +E +DF        +AHN +FD   + + L     D
Sbjct: 164 GITAADVEGAMPFATAAAELFDFIGSDVI--VAHNVQFDSSALRSGLLAAGAD 214


>gi|110803333|ref|YP_699430.1| exonuclease family protein [Clostridium perfringens SM101]
 gi|110683834|gb|ABG87204.1| exonuclease family protein [Clostridium perfringens SM101]
          Length = 300

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 28/173 (16%)

Query: 19  LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFS 77
           LDS N+ IIEIGA++L  + +    F+ ++ P+  K  +P+ + + GIT++ LKD   F 
Sbjct: 33  LDSYNE-IIEIGAIKLNKFMQEVDEFKTYIKPSVFKVLNPKIIDITGITEDHLKDGIKFE 91

Query: 78  SIFSEFWDFFNEQN--AEW-------IAHNAKF----DVGFINAELQRINKDPLDPSRII 124
                  DF  E +    W       I +NAK+    ++ +I        K  +D  +  
Sbjct: 92  DAMDNLKDFIGEDDILCSWATDDIVHIVNNAKYHSYKNISWI--------KKYIDIQKYC 143

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            T  +A +K  S ++ L  L     I I     H AL D+   ++V+ ++  G
Sbjct: 144 -TKILAHKKSLSLKHALEEL----KIKIDKSKLHDALNDAVYTAEVFKRLYNG 191


>gi|76786927|ref|YP_329306.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus agalactiae A909]
 gi|77411574|ref|ZP_00787916.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae CJB111]
 gi|76561984|gb|ABA44568.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae A909]
 gi|77162359|gb|EAO73328.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae CJB111]
          Length = 835

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L   P F  +    +     ++  ++AHN KFD   +  +L     +   P 
Sbjct: 73  LTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTPR 130

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDT+ +++  +P   +  L +L +   I ++    H A+ D+   + ++IK+
Sbjct: 131 --IDTVELSQVFYPCLEKYSLGALAESLNIELT--DAHTAIADARATAQLFIKL 180


>gi|110636436|ref|YP_676643.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC
           33406]
 gi|110279117|gb|ABG57303.1| DNA polymerase III, epsilon subunit [Cytophaga hutchinsonii ATCC
           33406]
          Length = 183

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 7/150 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET   ++    I  +G + +++  K  +T    + P     S   +++HGIT
Sbjct: 1   MNFTALDFETA--NTHKTSICAVG-MAIVEDGKVVKTISKLIKPVPDFYSYWNVQIHGIT 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +   D P F  ++ E   + +      +AHNA FDVG + + L   ++     +    +
Sbjct: 58  PDMTADAPYFIDVWQELKQYIDYST--LVAHNAAFDVGALRSILTT-HEVSFPKTDYFCS 114

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHR 155
            S++R+      N  L+++C+   + ++H 
Sbjct: 115 CSVSRKVFKEIENHKLSTVCRHIDVPLNHH 144


>gi|77413703|ref|ZP_00789886.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus agalactiae 515]
 gi|77160248|gb|EAO71376.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus agalactiae 515]
          Length = 835

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L   P F  +    +     ++  ++AHN KFD   +  +L     +   P 
Sbjct: 73  LTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTPR 130

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDT+ +++  +P   +  L +L +   I ++    H A+ D+   + ++IK+
Sbjct: 131 --IDTVELSQVFYPCLEKYSLGALAESLNIELT--DAHTAIADARATAQLFIKL 180


>gi|172058850|ref|YP_001815310.1| exonuclease RNase T and DNA polymerase III [Exiguobacterium
           sibiricum 255-15]
 gi|171991371|gb|ACB62293.1| Exonuclease RNase T and DNA polymerase III [Exiguobacterium
           sibiricum 255-15]
          Length = 190

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 7/165 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET    ++N R I      +L   +   + QV + P    ++   +++HGI    
Sbjct: 6   LAIDFETA---NRNSRSICAFGWSVLSEGRVVTSEQVLINPEEDFDAGN-IRVHGIRPSD 61

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           + D P+          F   + AE  IAHNA FD+G +   +Q+ +   +   +   T+ 
Sbjct: 62  VWDAPALPEAMEAHGLFKLIEKAELVIAHNAAFDMGALQKAVQKYDLYQMPTFQYGCTVK 121

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHR-SKHGALLDSHLLSDVY 171
           ++R+ +P   N  LN++ +   ++  H  +K  A + + LL D++
Sbjct: 122 LSRKLYPWLPNHKLNTMAEFLNVSFKHHDAKEDAYICALLLQDMF 166


>gi|328464770|gb|EGF36087.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus MTCC
           5462]
          Length = 140

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P+ +++HGIT + ++++P+F  ++     F+        AHNA FDV  +   L R    
Sbjct: 47  PQNIRIHGITPDMVQNQPTFDRVWPHIQMFYTPGRIV-TAHNAPFDVSVLRLTLDRYGI- 104

Query: 117 PLDPS-RIIDTL 127
              PS ++IDT+
Sbjct: 105 -AAPSYQVIDTV 115


>gi|198282567|ref|YP_002218888.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667091|ref|YP_002424758.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247088|gb|ACH82681.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519304|gb|ACK79890.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 201

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 48/196 (24%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-------ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +V D+ET G DS+ + ++E+ A+       +L   +  +   Q F    G    P AL  
Sbjct: 14  VVVDVETAGFDSERNALLEVAAIIIGGEVGQLRPVATHHFQVQPF---AGAVLDPAALAF 70

Query: 63  HGITDEF------LKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQR- 112
            GI D F      + ++ +   IF            + A  + HNA FD+ FI A  +R 
Sbjct: 71  TGI-DPFQALRGAVSEEEALRGIFRPVRTAVKVAQCRRAILVGHNAAFDLSFIKAAEKRT 129

Query: 113 -INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS------------HRSKHG 159
            +  +P       DT+S+A                 YG T+             H   H 
Sbjct: 130 GVKNNPFHLFSTFDTVSLAGLA--------------YGETVLAKAALAAGLDWDHTQAHS 175

Query: 160 ALLDSHLLSDVYIKMM 175
           AL D+   ++++ +++
Sbjct: 176 ALYDARQTAELFCRIV 191


>gi|163816457|ref|ZP_02207821.1| hypothetical protein COPEUT_02646 [Coprococcus eutactus ATCC
          27759]
 gi|158448157|gb|EDP25152.1| hypothetical protein COPEUT_02646 [Coprococcus eutactus ATCC
          27759]
          Length = 232

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 6  KMRKIVFDIETTGLDSK--NDR------IIEIGAVELLDYSKTNRTFQVFLCPN-GRKNS 56
          KM  IV D+E   LD K  N+R      +IEIGAV + +  +    F++++ P    K  
Sbjct: 9  KMVHIVVDLEMNWLDFKYENERKISTNEVIEIGAVTMNEKFEEIGAFKMYVKPQFNEKVV 68

Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEF 83
           +  KL GIT + L+D P F+  F  F
Sbjct: 69 KKVEKLTGITMDKLQDSPVFADAFDAF 95


>gi|227503316|ref|ZP_03933365.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49725]
 gi|227075819|gb|EEI13782.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49725]
          Length = 470

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 15/113 (13%)

Query: 10  IVFDIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEA-LKLH 63
           +  D+ET      ND    I +IGAV   D  +T    Q +LC  P G ++  E  + +H
Sbjct: 127 VAVDVETA-----NDNWGSICQIGAVRYRDGGETAS--QSWLCTPPPGLEHFAEINISIH 179

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           GIT   ++    F++  +E +DF        +AHN +FD   + + L     D
Sbjct: 180 GITAADVEGAMPFATAAAELFDFIGSDVI--VAHNVQFDSSALRSGLLAAGAD 230


>gi|315655203|ref|ZP_07908104.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315490458|gb|EFU80082.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 240

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 29/160 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+ +  DRI  +  +  ++ + + R    ++   G    P A +++G+TDE+L+
Sbjct: 19  FDTETTGVFTSRDRIATVSLIRRINGTDSPR---YWIINPGVPMPPAAGRVNGLTDEYLQ 75

Query: 72  DKPSFSSI-FSEFWDFFNE---QNAEWIAHNAKFDVGFINAEL---------QRINK--- 115
                  +   E      E   +    +  N  FD   + AEL         QR+     
Sbjct: 76  ANGVDPRVGLEEVAVIIAETMRRGVPVVGFNVTFDFAILEAELARHDLPTLRQRLEGSVE 135

Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
              DPL   RI+D       ++   + +L S+C  Y + +
Sbjct: 136 PIVDPLVLDRILD-------RYRKGKRNLASVCTAYDLPL 168


>gi|288800251|ref|ZP_06405709.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332464|gb|EFC70944.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 896

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 17/140 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK------L 62
           +VFD ETTGL+   D I++I AV++       N  F++F+  + ++  P  L       +
Sbjct: 515 VVFDTETTGLNVLEDDIVQIAAVKIAKGKVLENERFEIFI--DTKRPIPAMLGDIENPLI 572

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119
             I    L       + F E+ D      A  + HNA +D   +   L R          
Sbjct: 573 EEIKKHTLHTPAEALARFMEYID-----GAMLVGHNATYDYQILYNNLLRYLPQYTFLQK 627

Query: 120 PSRIIDTLSIARRKHPSSRN 139
            S  IDTL + R   PS +N
Sbjct: 628 HSSYIDTLKLTRLLQPSLKN 647


>gi|320536084|ref|ZP_08036140.1| exonuclease [Treponema phagedenis F0421]
 gi|320147069|gb|EFW38629.1| exonuclease [Treponema phagedenis F0421]
          Length = 190

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 74/197 (37%), Gaps = 30/197 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEI-------GAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M  I  D ETTGL+ +N    EI       G V      K N   +  L         EA
Sbjct: 1   MNTIWCDTETTGLEPENSGAFEIAFIFAGKGKVTCERLFKLNPLNETIL------YHEEA 54

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNE--------QNAEWIAHNAKFDVGFINAELQ 111
            K HG+++E ++  P    I     +FF +        +   +  +N  FD   + A   
Sbjct: 55  AKTHGVSEEEIRSFPPAEEIVPNIANFFQQAIHVFGDGEKLTFAGYNCNFDYRHLEALFN 114

Query: 112 RINKDPLDP-SRIIDTLSIARRKH-----PSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           R      D  S+  D L   ++       P   N  L ++CK  G+ +   + H AL D 
Sbjct: 115 RCGLTLADYFSKQFDALEFVKKATRQKAIPRLENLKLGTVCKSLGVNL--ENAHTALADI 172

Query: 165 HLLSDVYIKMMVGGSQI 181
                + I++   G ++
Sbjct: 173 QATRALCIELFKRGVKV 189


>gi|330812208|ref|YP_004356670.1| DNA polymerase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327380316|gb|AEA71666.1| putative DNA polymerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 235

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 12/109 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
           R +V D+ETTGL+   D+++ IGAV +    +D+S+   RT Q     + +K  P  L +
Sbjct: 40  RWVVLDLETTGLNLNKDQVLSIGAVVIEDGAIDFSQQFERTLQC----DKQKLGPSVL-I 94

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           HG+    +      +     F +F    ++  +A +A FD   +   L+
Sbjct: 95  HGLAPSAIAAGSDPAEALLAFMEFVG--DSPLLAFHAPFDSHMLGRALK 141


>gi|270635229|ref|ZP_06222077.1| ribonuclease T [Haemophilus influenzae HK1212]
 gi|270317424|gb|EFA28930.1| ribonuclease T [Haemophilus influenzae HK1212]
          Length = 151

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 90  QNAEWIAHNAKFDVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR 147
           Q +  +AHNA FD  F+ A  +R  + ++P  P  + DT S+A       +  L   C+ 
Sbjct: 54  QRSIIVAHNATFDQSFVMAAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQA 111

Query: 148 YGITISHRSKHGALLDSHLLSDVYIKMM 175
             I    +  H AL D+   + ++  M+
Sbjct: 112 AKIPFDGKQAHSALYDTERTAKLFCYMV 139


>gi|163857665|ref|YP_001631963.1| putative exonuclease [Bordetella petrii DSM 12804]
 gi|163261393|emb|CAP43695.1| putative exonuclease [Bordetella petrii]
          Length = 177

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 8/149 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD-EF 69
           V D+ETTGL + +  I+E  AV +       R F   +   G    P   +L GIT  E 
Sbjct: 10  VADLETTGLSTASCEILEFAAVHVGPDGAIEREFSQVVRTRG-TVPPFITRLTGITQAEV 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                  +  FS F  F    +A    HNA FD  F+ A  +       + +    TL +
Sbjct: 69  DGHGIPVAEAFSAFLAFLA--DAPVFFHNASFDCRFLQAAAEHTGLPFANATHC--TLQL 124

Query: 130 ARRKHPS-SRNDLNSLCKRYGIT-ISHRS 156
           AR+  P    + L  L +  G    +HR+
Sbjct: 125 ARQAWPELPSHKLQVLARHVGAADPTHRA 153


>gi|332715841|ref|YP_004443307.1| DNA polymerase III subunit epsilon [Agrobacterium sp. H13-3]
 gi|325062526|gb|ADY66216.1| DNA polymerase III subunit epsilon [Agrobacterium sp. H13-3]
          Length = 326

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLH 63
           + ++ D ETTGL+ + D IIEIG +     D         V+  L   G     E  +L 
Sbjct: 72  QGVILDTETTGLNHRTDEIIEIGVITFTFDDQGTIGDVTGVYGGLRQPGTSIPEEITRLT 131

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           GITDE +  +    +I  +      E     IAHNA FD  F  A
Sbjct: 132 GITDEMVAGQ----TIDIDRLTSLVEGADLIIAHNAGFDRPFCEA 172


>gi|320094495|ref|ZP_08026269.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319978573|gb|EFW10142.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 238

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 23/175 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG     DR++    V  L     +     +L   G +   +A  +HGIT E+ +
Sbjct: 11  FDTETTGTSPFKDRLVTAALV--LRVEGRDDQVATWLADPGVEIPEQASAVHGITTEYAR 68

Query: 72  D--KPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDVGFINAELQRIN----KDPLD 119
           +  +P    +  E      E    W      +A NA +D+  ++ EL R       + LD
Sbjct: 69  EHGRP-VEEVLEEVAGCLTEH---WFRGFPVVAFNASYDITLVDRELSRHGLATFAERLD 124

Query: 120 --PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             P  ++D L + R+  +    +  L  +   YG+  S    H A +D  +  +V
Sbjct: 125 GEPMLVVDPLVLDRKLDRFRKGKKTLTDMAPVYGVEASP-DAHTAEVDVAMTLNV 178


>gi|116051228|ref|YP_789941.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296388274|ref|ZP_06877749.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAb1]
 gi|115586449|gb|ABJ12464.1| putative nuclease [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 208

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 87/177 (49%), Gaps = 13/177 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEALKLHGITD 67
           I  D+ETT LD +   ++ IGAV L+   K       ++++ P    ++ E++++H +  
Sbjct: 33  ISLDLETTSLDPRRADVLSIGAV-LVRRGKLVMGERLELYVEPPPSLDA-ESIRIHKLRR 90

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDT 126
             L+ +        +   F  ++    + +   FDV  +N  L+++ ++   +PS  I +
Sbjct: 91  ADLEGQLQLEQALRQLLAFIGDRPL--LGYYLSFDVAVLNRHLRQLFDRQLHNPSIEISS 148

Query: 127 LSIAR--RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           L   +  R  P +  DL  ++L +   + +S R  H AL D+  ++ ++++++ G +
Sbjct: 149 LYHRKVSRHFPDAHIDLRFDTLARALDVPVSGR--HTALGDAQAVALMFMRLLKGPA 203


>gi|76798115|ref|ZP_00780369.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae 18RS21]
 gi|76586523|gb|EAO63027.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae 18RS21]
          Length = 740

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L   P F  +    +     ++  ++AHN KFD   +  +L     +   P 
Sbjct: 73  LTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTPR 130

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDT+ +++  +P   +  L +L +   I ++    H A+ D+   + ++IK+
Sbjct: 131 --IDTVELSQVFYPCLEKYSLGALAESLNIELT--DAHTAIADARATAQLFIKL 180


>gi|330505332|ref|YP_004382201.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
 gi|328919618|gb|AEB60449.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina NK-01]
          Length = 233

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 12/175 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKL 62
           ++ R +V D+ETTGL+ + D+++ IGAV ++D+   +    F+  L     + S   L +
Sbjct: 37  HEQRLVVLDLETTGLNMRRDQVLAIGAV-VIDHGAIDFAEQFECTLHQPDHQASASTL-I 94

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI    +      +    +F +F    ++  +A +A FD   +   L++     L  S 
Sbjct: 95  HGIAPSEVARGVDPAEGLLDFMEFVG--SSPLLAFHAGFDQRMLARALRQSLGYRLQHS- 151

Query: 123 IIDTLSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             D   IA    P +R     L+     +G+ +  R  H A  D+ + +++ + +
Sbjct: 152 FFDVAEIAPLLCPQARIRQGGLDDWVAEFGLQVHQR--HNASADALVTAELALML 204


>gi|325970703|ref|YP_004246894.1| exonuclease RNase T and DNA polymerase III [Spirochaeta sp. Buddy]
 gi|324025941|gb|ADY12700.1| Exonuclease RNase T and DNA polymerase III [Spirochaeta sp. Buddy]
          Length = 197

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 43  TFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           T+   + P      P    +H + DE     P F  I+ +  DF  +     +AHNA FD
Sbjct: 35  TYYSLIHPKHPYFDPSMTAVHQLKDEECLAAPEFDVIWPQMRDFIGKDLL--VAHNAVFD 92

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGAL 161
           +G +    +  + +    + +  TL+IAR+  P   +  L+ L   YG+       H AL
Sbjct: 93  MGVLKGCFEVYDLEARQMTYLC-TLTIARKVWPKMLSYKLSYLVDYYGM---EYQAHYAL 148

Query: 162 LDSHLLSDVYIKMMVG 177
            D+ +   +  K+  G
Sbjct: 149 DDAIMCGKMMHKLCYG 164


>gi|227893216|ref|ZP_04011021.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
 gi|227864985|gb|EEJ72406.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
          Length = 177

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++H IT E +K+ P+ + ++ +    + +      AHNA+FD   +   L R N +  +
Sbjct: 50  IQVHQITAEDVKNAPTMAEVWPKIKGLY-QPGMLVAAHNARFDTNVMRQSLARYNIE--E 106

Query: 120 PSR-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P   +IDTL+ ++   P   N  L+++     + + H   H AL DS   + + I
Sbjct: 107 PHYLVIDTLATSKLFEPELPNHKLDTVSSTLDVELWHH--HNALSDSEACAGILI 159


>gi|251782080|ref|YP_002996382.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390709|dbj|BAH81168.1| ATP-dependent DNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 820

 Score = 39.7 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 7/126 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+E T   +    II++G V +++  +   T+Q  + P+    S     L GITD  L
Sbjct: 11  VVDLEATNAGA-TAAIIQVGIV-IIEGKEVVETYQTDINPH-EPLSDHIKALTGITDAQL 67

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P FS +    ++  ++    ++AHN KFD   +   L     + L P   +DT+ +A
Sbjct: 68  AQAPEFSQVAKTIYELISD--CVFVAHNVKFDANLLAEALFFEGYELLTPR--VDTVELA 123

Query: 131 RRKHPS 136
           +  +PS
Sbjct: 124 QIFYPS 129


>gi|198274893|ref|ZP_03207425.1| hypothetical protein BACPLE_01052 [Bacteroides plebeius DSM 17135]
 gi|198272340|gb|EDY96609.1| hypothetical protein BACPLE_01052 [Bacteroides plebeius DSM 17135]
          Length = 163

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 43  TFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           TF   + P     +    ++HG+T E  +D P F +++++       +    +AHN  FD
Sbjct: 35  TFYSLINPEPNYYTYWCSQVHGLTREDTEDAPVFPAVWAQIEPLI--EGLPLVAHNRPFD 92

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGAL 161
              + A  +    D  D     DTL +ARR  P   N  L+++    G  +   + H AL
Sbjct: 93  ESCLKAVFRVYQMDYPD-YEFYDTLCVARRVFPELPNHQLHTVAAACGYRLE--NHHHAL 149

Query: 162 LDS 164
            D+
Sbjct: 150 ADA 152


>gi|83311172|ref|YP_421436.1| DNA polymerase III subunit epsilon [Magnetospirillum magneticum
           AMB-1]
 gi|82946013|dbj|BAE50877.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
          Length = 306

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 45/103 (43%), Gaps = 10/103 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-----SPEALKLHG 64
           I  D+ETTGLD   D IIE+  V  + Y    R F++     G +        E  KL G
Sbjct: 53  IFIDLETTGLDPAKDEIIELAMVPFV-YGLDGRIFEIQDAFQGLRQPSNPIPAEITKLTG 111

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           ITDE +  K     I       F    A  IAHNA FD  FI 
Sbjct: 112 ITDEMVAGK----VIDPAEVAAFAAPAAIVIAHNAAFDRKFIE 150


>gi|322411431|gb|EFY02339.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 820

 Score = 39.7 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 7/126 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+E T   +    II++G V +++  +   T+Q  + P+    S     L GITD  L
Sbjct: 11  VVDLEATNAGA-TAAIIQVGIV-IIEGKEVVETYQTDINPH-EPLSDHIKDLTGITDAQL 67

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P FS +    ++  ++    ++AHN KFD   +   L     + L P   +DT+ +A
Sbjct: 68  AQAPEFSQVAKTIYELISD--CVFVAHNVKFDANLLAEALFFEGYELLTPR--VDTVELA 123

Query: 131 RRKHPS 136
           +  +PS
Sbjct: 124 QIFYPS 129


>gi|331082129|ref|ZP_08331257.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405724|gb|EGG85254.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 405

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 15/196 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD+ET   +  NDRI   G + L+   +  + +   + P  R +    + L GI    
Sbjct: 113 IAFDVETP--NKNNDRISYAG-ILLVCNGEIIKNYSTLINPETRFDHFNTV-LTGIDASA 168

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P+F   +    D F +     IAHNA FD+  ++  L       + P + + T + 
Sbjct: 169 VCHAPTFKEYWPSIEDLFKKYVI--IAHNANFDLSVLSKTLLHYGLK-VPPIKYVCTYNE 225

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +R K P   +  L S+ + + I + +   H A  D+ + S ++  +    SQ N+ F   
Sbjct: 226 SRNKFPQLGKYSLKSMAEYFDIPLENH--HDAKSDAQVCSSIFEAI---KSQ-NYMFTPK 279

Query: 189 EDRFFKEEKKTVPNIS 204
           E   F EEK +  NIS
Sbjct: 280 EFE-FHEEKTSEFNIS 294


>gi|323126941|gb|ADX24238.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 820

 Score = 39.7 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 7/126 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+E T   +    II++G V +++  +   T+Q  + P+    S     L GITD  L
Sbjct: 11  VVDLEATNAGA-TAAIIQVGIV-IIEGKEVVETYQTDINPH-EPLSDHIKALTGITDAQL 67

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P FS +    ++  ++    ++AHN KFD   +   L     + L P   +DT+ +A
Sbjct: 68  AQAPEFSQVAKTIYELISD--CVFVAHNVKFDANLLAEALFFEGYELLTPR--VDTVELA 123

Query: 131 RRKHPS 136
           +  +PS
Sbjct: 124 QIFYPS 129


>gi|110597891|ref|ZP_01386173.1| Exonuclease [Chlorobium ferrooxidans DSM 13031]
 gi|110340468|gb|EAT58954.1| Exonuclease [Chlorobium ferrooxidans DSM 13031]
          Length = 189

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 14/117 (11%)

Query: 10  IVFDIETTGL---------DSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           + FD E+TGL         D  N  R++++  +          +    + P G    PEA
Sbjct: 3   LFFDTESTGLPRNWKAPVTDLGNWLRLVQLAYLSFDGVGNQTGSGNFIVRPEGFSIPPEA 62

Query: 60  LKLHGI-TDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRIN 114
             +HGI T + L +      +  EF  +   + AEW +AHN  FD   + AE  R+ 
Sbjct: 63  AAIHGISTAQALAEGLELKRVMEEF--YAEVERAEWLVAHNMSFDEKILGAEFLRLG 117


>gi|56460284|ref|YP_155565.1| 3'-5' exonuclease [Idiomarina loihiensis L2TR]
 gi|56179294|gb|AAV82016.1| 3'-5' exonuclease [Idiomarina loihiensis L2TR]
          Length = 215

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 28/187 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRK----NSPEAL 60
           +R +  DIE+TGLD K  +I+ I  + +        N  + VF   +G++     SP   
Sbjct: 25  LRYVALDIESTGLDPKKHQILSIAWMSIHPPVMHLGNAQYHVF--AHGQELELGQSP--- 79

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HG+T +           F+      N  +A  + H+   D  F+   ++     P  P
Sbjct: 80  TIHGLTRQDFLHSSEPKQTFAMLSRALN--DAVLVCHHKGMDWRFLK-HIEAQYGIPFKP 136

Query: 121 SRIIDTLSIARRKHPSSRND----------LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             I DTL  A  KH   RN           L++  KRY +   H   H AL D+   +++
Sbjct: 137 LAIFDTL--AFEKHKLERNPHQPIYGGQLALSACRKRYNLPDYH--AHHALTDTVACAEL 192

Query: 171 YIKMMVG 177
           ++    G
Sbjct: 193 FLAQCYG 199


>gi|295094549|emb|CBK83640.1| Inhibitor of the KinA pathway to sporulation, predicted
          exonuclease [Coprococcus sp. ART55/1]
          Length = 216

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 7  MRKIVFDIETTGLDSKNDR--------IIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP 57
          M  +  D E   +DS+  +        IIEIGAV+L  DY++ + +F+ ++ P     + 
Sbjct: 1  MIYVFVDFEMNMIDSEYKKEKKICKSEIIEIGAVKLDEDYNEID-SFKSYVKPAYGTMAS 59

Query: 58 EALKLHGITDEFLKDKPSFSSIFSEF 83
            +KL GITD+ ++D PS++     F
Sbjct: 60 RIIKLTGITDDMVEDAPSYAFAMGSF 85


>gi|167464941|ref|ZP_02330030.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
          subsp. larvae BRL-230010]
          Length = 89

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 7  MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLH 63
          MR+I  VFD+ETTGLD   D+I EI A+   D  +      V +  N G K +PE + L 
Sbjct: 1  MREIYTVFDLETTGLDPTKDQITEITAIR-TDLIREYGRLDVRITKNSGTKLTPEIINLT 59

Query: 64 GITDEFLK 71
          GI +  ++
Sbjct: 60 GINESMMR 67


>gi|94267095|ref|ZP_01290732.1| Exonuclease [delta proteobacterium MLMS-1]
 gi|94268501|ref|ZP_01291197.1| Exonuclease [delta proteobacterium MLMS-1]
 gi|93451582|gb|EAT02387.1| Exonuclease [delta proteobacterium MLMS-1]
 gi|93452187|gb|EAT02848.1| Exonuclease [delta proteobacterium MLMS-1]
          Length = 161

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQRINKDPLDP 120
           +HG+  E ++  PSF  I+ E          E++A HNA FD G +NA        P  P
Sbjct: 52  IHGLGWEDVRRAPSFGEIWPEI--AAELAGVEFLAAHNASFDRGVLNACCHAHGLAP--P 107

Query: 121 S-RIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154
           S   + T+ +AR++       L+ +C+R  I ++H
Sbjct: 108 SLPFVCTVQLARQRWNIRPTKLSDVCRRLDIALNH 142


>gi|91215241|ref|ZP_01252213.1| DNA Pol III Epsilon Chain [Psychroflexus torquis ATCC 700755]
 gi|91186846|gb|EAS73217.1| DNA Pol III Epsilon Chain [Psychroflexus torquis ATCC 700755]
          Length = 256

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 5/106 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG++   DRI+EI  +++  +   N+    +    G     E   +HGI+DE + 
Sbjct: 12  FDLETTGINISKDRIVEISILKV--FENNNKESYTWKVNPGIPIPKETTAIHGISDEDVV 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           ++P F  +  +       +  +   +N+ +FD+  +  E+ R   D
Sbjct: 70  NEPKFDELAPKINAMI--KGCDLGGYNSNRFDIPLLAEEMLRTGID 113


>gi|119944727|ref|YP_942407.1| DNA polymerase III subunit epsilon [Psychromonas ingrahamii 37]
 gi|119863331|gb|ABM02808.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas
           ingrahamii 37]
          Length = 238

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 11/124 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP--NGRKNSPEALKLHGIT 66
           +  D ETTGLDS+ + II IG V   L      +  + ++ P  N ++NS   + +HGIT
Sbjct: 49  VALDFETTGLDSQQNGIISIGLVPFNLQRIFCRKVKEWYINPQDNLQENS---IIIHGIT 105

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIID 125
              L+D P    I  +  D    +    + H  + +  F++  L+  I++  L P  +ID
Sbjct: 106 HSDLQDAPDILRILEQLLDELAGKVV--VVHYRRIERDFLDHTLRILIDEGILFP--VID 161

Query: 126 TLSI 129
           T+ I
Sbjct: 162 TMQI 165


>gi|290968369|ref|ZP_06559909.1| exonuclease [Megasphaera genomosp. type_1 str. 28L]
 gi|290781556|gb|EFD94144.1| exonuclease [Megasphaera genomosp. type_1 str. 28L]
          Length = 221

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 7  MRKIVFDIETTGLDSKNDR--------IIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSP 57
          M+ +  D E   +D ++          IIEIGAV+L +  K    ++ ++CP    + + 
Sbjct: 1  MKAVFVDFEMNPIDRRHQEARRICQGEIIEIGAVKLDEDGKEIGAYKEYICPEYTSQMNA 60

Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNE 89
              L GIT + L     F ++F+ F  + NE
Sbjct: 61 TCQALTGITMDMLTPAAHFQTVFAHFLAWCNE 92


>gi|295425904|ref|ZP_06818582.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064402|gb|EFG55332.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           amylolyticus DSM 11664]
          Length = 177

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 59/115 (51%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++H IT + ++D P+ + ++ +  D + +      AHNA+FD   +   L R +    +
Sbjct: 50  IEVHQITADDVRDAPTMAEVWPKIKDLY-QPGMLVAAHNARFDTNVMRQSLARYSIS--E 106

Query: 120 PSR-IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P   +IDTL+ ++   P    + L+++ +   + + H   H AL DS   +++ I
Sbjct: 107 PHYLVIDTLATSKLLEPDLPDHKLDTVSEALNVNLWHH--HNALSDSEACAEILI 159


>gi|290970730|ref|XP_002668233.1| predicted protein [Naegleria gruberi]
 gi|284081517|gb|EFC35489.1| predicted protein [Naegleria gruberi]
          Length = 1135

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 8/122 (6%)

Query: 10   IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            +V D+ETTGL   +  I+++G + L+    +   F +++ P     S  A KLH      
Sbjct: 890  VVLDLETTGLMPNDHEIVQVGMISLI----SKCAFSIYIKPKYHDWSSHAKKLHVDKMNE 945

Query: 70   LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +      I     ++  + N   A  + H+   D  F+   L + +  P+D   I++T
Sbjct: 946  INNGKQLDQIIIPIHNYLTKNNSCTAVVLVHSTSLDRNFLMKALTK-HGLPIDRYMIVNT 1004

Query: 127  LS 128
            +S
Sbjct: 1005 IS 1006


>gi|15891836|ref|NP_357508.1| DNA polymerase III subunit epsilon [Agrobacterium tumefaciens str.
           C58]
 gi|15160320|gb|AAK90293.1| polymerase epsilon subunit [Agrobacterium tumefaciens str. C58]
          Length = 326

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 16/107 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGLD + D IIEIG +     D         ++  L   G     +  +L GI
Sbjct: 74  VILDTETTGLDHRTDEIIEIGVITFTFDDQGAIGDVTGIYGGLRQPGVAIPEDITRLTGI 133

Query: 66  TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           TDE +     D    +S+ +   D         IAHNA FD  F  A
Sbjct: 134 TDEMVAGQSIDMMRLTSLIAHA-DLI-------IAHNAGFDRPFCEA 172


>gi|51596199|ref|YP_070390.1| Orf81 bacteriophage 186 [Yersinia pseudotuberculosis IP 32953]
 gi|51589481|emb|CAH21103.1| similar to Orf81 bacteriophage 186 [Yersinia pseudotuberculosis IP
           32953]
          Length = 217

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGL + +  IIEI  ++      T +     L    +    E   +HGIT+E 
Sbjct: 46  LILDTETTGLGN-DAEIIEISIIDC-----TGKILLDTLVKPLKAIPAEVTAIHGITNEM 99

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           + D P++  I  +F    N++    + +NA FD   I
Sbjct: 100 VADAPTWRDIHYQFMTLTNDRTL--LIYNALFDSRLI 134


>gi|152993185|ref|YP_001358906.1| exonuclease [Sulfurovum sp. NBC37-1]
 gi|151425046|dbj|BAF72549.1| exonuclease [Sulfurovum sp. NBC37-1]
          Length = 263

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 15/113 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDEFL 70
           D+E+TG+D KNDR+I++  +++          + F  LC    + +   + +H IT+  L
Sbjct: 9   DVESTGVDLKNDRLIQLAFLKV-----QGDKIEAFNDLCYTDIEMNDTVVAIHNITNAML 63

Query: 71  KDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-----AELQRINKD 116
           +DK  P  +  F E  +  N     +IAH  + DV  +       E+Q+++ D
Sbjct: 64  EDKYWPYETDAFIEL-EKGNSPANYFIAHGNELDVAMLEHEELILEMQKVDTD 115


>gi|301162194|emb|CBW21739.1| putative exonuclease [Bacteroides fragilis 638R]
          Length = 175

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 26/175 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I F+  T  ++S       +G V + D   T+  + +   P         L +HGIT   
Sbjct: 8   IDFETATGYMESA----CAVGIVTVTDGEITDEYYSLIQPPENEYWRANML-VHGITPGM 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +  P F +I+ E       Q    +AHN +FD   +   ++    D        D LS+
Sbjct: 63  TESLPGFHAIYPEVKKRL--QGKVVVAHNEQFDRNVLKNTMRMYGLD-------YDELSL 113

Query: 130 ARRKHPSSR---------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R   + R          +L++ C+R GI + H   H AL D+   + +Y+  +
Sbjct: 114 PERWECTCRIYRSLGYKPVNLSACCEREGIELKH---HEALSDARGCAKLYLNFL 165


>gi|300781342|ref|ZP_07091196.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC
           33030]
 gi|300533049|gb|EFK54110.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC
           33030]
          Length = 194

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 12/173 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTGL      ++ IG V + D          F+      +  ++  +HG+TD+ 
Sbjct: 23  LAVDVETTGLKPDKHHLVSIGWVPVTDRVIDLSGAGYFVLAGA--SVGDSATVHGVTDDD 80

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRIIDTL 127
           +  +   + +  + +    E  A  +AH A+ + GFI+A  +R+   +  L    + DTL
Sbjct: 81  IAREGVDAQVALDAFLQAIEGRA-LLAHFAQMETGFIDALHKRVYGKRFRLREDEVEDTL 139

Query: 128 SIARR------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           S+ RR       +P    DL     R    +     H AL D+   +++Y+ +
Sbjct: 140 SLERRHMERMATYPRG-EDLRLARVRSRYNLPDYGNHNALTDALACAELYLAL 191


>gi|295692577|ref|YP_003601187.1| DNA polymerase iii, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus crispatus ST1]
 gi|295030683|emb|CBL50162.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus crispatus ST1]
          Length = 177

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 7/116 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++H IT E +K+ P+ + ++    + + +      AHNA+FD   +   L R   +  +
Sbjct: 50  IQIHQITAEDVKNAPTMAEVWPHIKELY-QPGMLVAAHNARFDTNVMRQSLARYGIE--E 106

Query: 120 PSR-IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           P   +IDTL+ ++   P    + L+++ +   + + H   H AL DS   + + IK
Sbjct: 107 PHYLVIDTLASSKLLEPELPDHKLDTVSEALNVELWHH--HNALSDSEACAGILIK 160


>gi|171742298|ref|ZP_02918105.1| hypothetical protein BIFDEN_01404 [Bifidobacterium dentium ATCC
           27678]
 gi|171277912|gb|EDT45573.1| hypothetical protein BIFDEN_01404 [Bifidobacterium dentium ATCC
           27678]
          Length = 586

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 77/199 (38%), Gaps = 50/199 (25%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLD-------------------------YSKTNRTFQV 46
            DIETTG D     II++G  E ++                         Y +   +F V
Sbjct: 359 VDIETTGTDPARTYIIDVG-FEFMNMMSPRPADAPAEYRYEQSSYVTGDAYGQARLSFGV 417

Query: 47  FLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNA 99
               N    +   L+L GI    ++D      +F E W           EQ   ++AHNA
Sbjct: 418 -TPENAAVGNDLILRLTGID---VRDLAGGPRLFDE-WPAAQIGLLQRLEQQ-PYVAHNA 471

Query: 100 KFDVGFI------NAELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
           +F+ GF        AE  R       D L  SR  D  SI   +HP   N L S  KR G
Sbjct: 472 RFEHGFFMLNIAGYAESYRAGNITIIDTLPMSRRWDDGSIPDDEHPYGDNTLESYAKRQG 531

Query: 150 ITISHRS-KHGALLDSHLL 167
              S +S +H  L D+H++
Sbjct: 532 ALDSSKSERHLGLEDAHIM 550


>gi|160901390|ref|YP_001566972.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1]
 gi|160366974|gb|ABX38587.1| Exonuclease RNase T and DNA polymerase III [Delftia acidovorans
           SPH-1]
          Length = 212

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 10/173 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGLD + D+II IGAV ++     +      L    R    +++++H + +  
Sbjct: 35  VALDCETTGLDVRCDQIISIGAVRIVGERILSSERLELLVRPSRSVPGDSVRIHRLRERD 94

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLS 128
           L    +     ++   F   +    + +  +FDV  I   L+      L   RI +  L 
Sbjct: 95  LARGLAIEDALAQLLRFIGSRPL--VGYYLEFDVAMIERVLRPWLGTGLPNERIEVSALY 152

Query: 129 IARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              R       +  +   DL        + +  R  H AL D+ + +  +IK+
Sbjct: 153 YDHRFRQLLPWQQQAPEIDLRFATLMANLGLPQREAHDALNDAVMAALAFIKL 205


>gi|262045749|ref|ZP_06018713.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
 gi|260573708|gb|EEX30264.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
          Length = 177

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 7/116 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++H IT E +K+ P+ + ++    + + +      AHNA+FD   +   L R   +  +
Sbjct: 50  IQVHQITAEDVKNAPTMAEVWPHIKELY-QPGMLVAAHNARFDTNVMRQSLARYGIE--E 106

Query: 120 PSR-IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           P   +IDTL+ ++   P    + L+++ +   + + H   H AL DS   + + IK
Sbjct: 107 PHYLVIDTLASSKLLEPELPDHKLDTVSEALSVELWHH--HNALSDSEACAGILIK 160


>gi|160893764|ref|ZP_02074548.1| hypothetical protein CLOL250_01318 [Clostridium sp. L2-50]
 gi|156864749|gb|EDO58180.1| hypothetical protein CLOL250_01318 [Clostridium sp. L2-50]
          Length = 216

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 7  MRKIVFDIETTGLDSKN--------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
          M  I  D E   +D+ +        + IIEIGAV+L D  K   +F+ ++ P     +  
Sbjct: 1  MEYIFVDFEMNQIDNSHPDELKICKNEIIEIGAVKLDDTYKEIDSFKTYVKPGITPVTSR 60

Query: 59 ALKLHGITDEFLKDKPSFSSIFSEF 83
             L GIT+E + D P F+     F
Sbjct: 61 ITNLTGITNEMVDDAPDFAIAMDRF 85


>gi|283456597|ref|YP_003361161.1| DNA polymerase III [Bifidobacterium dentium Bd1]
 gi|283103231|gb|ADB10337.1| DNA polymerase III [Bifidobacterium dentium Bd1]
          Length = 525

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 11/85 (12%)

Query: 94  WIAHNAKFDVGFI------NAELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNS 143
           ++AHNA+F+ GF        AE  R       D L  SR  D  SI   +HP   N L S
Sbjct: 405 YVAHNARFEHGFFMLNIAGYAESYRAGNITIIDTLPMSRRWDDGSIPDDEHPYGDNTLES 464

Query: 144 LCKRYGITISHRS-KHGALLDSHLL 167
             KR G   S +S +H  L D+H++
Sbjct: 465 YAKRQGALDSSKSERHLGLEDAHIM 489


>gi|227541256|ref|ZP_03971305.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227182972|gb|EEI63944.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 1246

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 6/104 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V +++T+G+ S+ DRIIEIG V      K   T+   + P  R  S  A  +HGI++   
Sbjct: 851 VLNVKTSGI-SERDRIIEIGIVLATLNGKVEGTYTTLINPR-RSFSDSA--IHGISERMT 906

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              P F  +  +  +  + +    IAH+A F    +  E  R N
Sbjct: 907 VATPVFEEVADDIAELLDRRI--LIAHDAPFVSKQLGREFSRSN 948


>gi|148986116|ref|ZP_01819102.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP3-BS71]
 gi|149004079|ref|ZP_01828884.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69]
 gi|147757891|gb|EDK64900.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69]
 gi|147921830|gb|EDK72957.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP3-BS71]
 gi|301799167|emb|CBW31680.1| unnamed protein product [Streptococcus pneumoniae OXC141]
          Length = 307

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT E + D P+F  +     DF        +AH A+FD+G +    Q+   D  D  
Sbjct: 54  IHGITPEDVLDSPTFPEVRKSIVDFIGLDIV--VAHFAQFDMGALKDVYQKYELD-FDNI 110

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
             I +  +A+   P   N  L  L K   I + H   H AL D+
Sbjct: 111 EYICSYRLAKVALPGQLNYKLKRLAKNLNIELDH---HNALSDA 151


>gi|18311136|ref|NP_563070.1| exonuclease family protein [Clostridium perfringens str. 13]
 gi|110799345|ref|YP_696832.1| exonuclease family protein [Clostridium perfringens ATCC 13124]
 gi|168205611|ref|ZP_02631616.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
 gi|168208856|ref|ZP_02634481.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|168212809|ref|ZP_02638434.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|168215781|ref|ZP_02641406.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
 gi|169344238|ref|ZP_02865220.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
 gi|182623972|ref|ZP_02951760.1| exonuclease family protein [Clostridium perfringens D str. JGS1721]
 gi|18145819|dbj|BAB81860.1| probable DNA polymerase III epsilon chain [Clostridium perfringens
           str. 13]
 gi|110673992|gb|ABG82979.1| exonuclease family protein [Clostridium perfringens ATCC 13124]
 gi|169297697|gb|EDS79797.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
 gi|170662857|gb|EDT15540.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
 gi|170713011|gb|EDT25193.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170715467|gb|EDT27649.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|177910865|gb|EDT73219.1| exonuclease family protein [Clostridium perfringens D str. JGS1721]
 gi|182382180|gb|EDT79659.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
          Length = 300

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 11/93 (11%)

Query: 19  LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFS 77
           LDS N+ IIEIGA++L  + +    F+ ++ P+  K  +P+ + + GIT++ LKD   F 
Sbjct: 33  LDSYNE-IIEIGAIKLNKFMQEVDEFKTYIKPSVFKVLNPKIIDITGITEDHLKDGIKFE 91

Query: 78  SIFSEFWDFFNEQN--AEW-------IAHNAKF 101
                  DF  E +    W       I +NAK+
Sbjct: 92  DAMDNLKDFIGEDDILCSWATDDIVHIVNNAKY 124


>gi|227832929|ref|YP_002834636.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453945|gb|ACP32698.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 233

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 23/161 (14%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +  R + FD+ETT +  K  RI+   A+  +D  + ++  +  L   G +   EA K+HG
Sbjct: 14  DATRMLSFDLETTSVKPKEARIV-TSALVRIDGREVDK--REMLADPGVEIPEEAAKIHG 70

Query: 65  ITDEFLKD---------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RI 113
           IT E  +          K +  SI+ + WD    +    I +NA +D+  + A      +
Sbjct: 71  ITTEKARAEGRPHEEVLKETVDSIY-QAWD----EGLTLIVYNAAYDLSVLRALTGDFTV 125

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154
           N    DP  +ID +    RK    +  L  +   YG+ +S+
Sbjct: 126 NGPVFDPF-VIDRVKDKWRK---GKRTLEEVSAHYGVELSN 162


>gi|227877226|ref|ZP_03995299.1| DNA polymerase III alpha chain [Lactobacillus crispatus JV-V01]
 gi|256842782|ref|ZP_05548270.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|256848912|ref|ZP_05554346.1| DNA polymerase subunit III alpha [Lactobacillus crispatus MV-1A-US]
 gi|293380675|ref|ZP_06626725.1| exonuclease [Lactobacillus crispatus 214-1]
 gi|312977700|ref|ZP_07789447.1| exonuclease [Lactobacillus crispatus CTV-05]
 gi|227863082|gb|EEJ70528.1| DNA polymerase III alpha chain [Lactobacillus crispatus JV-V01]
 gi|256614202|gb|EEU19403.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|256714451|gb|EEU29438.1| DNA polymerase subunit III alpha [Lactobacillus crispatus MV-1A-US]
 gi|290922772|gb|EFD99724.1| exonuclease [Lactobacillus crispatus 214-1]
 gi|310895439|gb|EFQ44506.1| exonuclease [Lactobacillus crispatus CTV-05]
          Length = 177

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 7/116 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++H IT E +K+ P+ + ++    + + +      AHNA+FD   +   L R   +  +
Sbjct: 50  IQVHQITAEDVKNAPTMAEVWPHIKELY-QPGMLVAAHNARFDTNVMRQSLARYGIE--E 106

Query: 120 PSR-IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           P   +IDTL+ ++   P    + L+++ +   + + H   H AL DS   + + IK
Sbjct: 107 PHYLVIDTLASSKLLEPELPDHKLDTVSEALNVELWHH--HNALSDSEACAGILIK 160


>gi|330448832|ref|ZP_08312478.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328493023|dbj|GAA06975.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 376

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 6/98 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ETTGLD   + ++EI  V+     +        + P   ++  EA  +HGI+ E 
Sbjct: 2   IYLDTETTGLDPDFNEVLEIAIVD----REGKILLNTLVKPQRNESWHEAQVIHGISPEM 57

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           + + P+   +     D    Q+     +N +FD  F++
Sbjct: 58  VANAPTMEDLKPTINDIVKGQHVR--IYNKEFDAAFVD 93


>gi|89098850|ref|ZP_01171731.1| DNA polymerase III subunit epsilon [Bacillus sp. NRRL B-14911]
 gi|89086526|gb|EAR65646.1| DNA polymerase III subunit epsilon [Bacillus sp. NRRL B-14911]
          Length = 214

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 23/162 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV---------ELLDYSKTNRTFQVFLCPNGRKNSPE 58
           + ++ D+ETTGL    D IIE+  +         E+L   +     +  L     +N   
Sbjct: 6   KGLLVDVETTGLAPGGDEIIELAFILFSYDGATGEILQVEEKESFLREPLSSRALRNYSS 65

Query: 59  ALKLHGITDEFLKDKPSFSSIFSE--FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           A ++HGI  E ++ +     +F +     F N+ ++ + AHNA FD  F+      +N  
Sbjct: 66  AYRIHGIPFEMVRGQ-----VFHDESVQSFLNKADSVF-AHNASFDRSFMYQMYPEVN-- 117

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT--ISHRS 156
             D         +  +K+  + + L +L   + IT   +HR+
Sbjct: 118 --DLKWYCTMKGVQWKKYGFANSKLATLLSAHNITDHQTHRA 157


>gi|124023602|ref|YP_001017909.1| DNA polymerase III subunit epsilon [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963888|gb|ABM78644.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9303]
          Length = 321

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 18/169 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGLD K  + +E+GA+      +       FL P    N+ E+  ++ I  E 
Sbjct: 92  LIIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLLPV-ETNAAES--INRIPAEV 148

Query: 70  LK-DKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRII 124
            + D+P     + +  D+F    +     +AHNA FD   F   +L  ++K  L     +
Sbjct: 149 TRLDQP-----WRQGLDYFQALLDAADLLVAHNAGFDRQWFGKDQLPAVSKPWLC---TM 200

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + ++    +   SR  +  L   YG+ +   + H AL D   L++V+ +
Sbjct: 201 EDIAWPVDRQLRSRPSVRDLALAYGVPV--WAAHRALTDCIYLAEVFAR 247


>gi|313496718|gb|ADR58084.1| DNA polymerase III, epsilon subunit [Pseudomonas putida BIRD-1]
          Length = 236

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 24/178 (13%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKT-NRTFQVFLCPNGRKNSPEAL 60
           + R +V D+ET+GL+   D+++ IGAV +    +D+++   RT      P  + N+  ++
Sbjct: 38  EQRWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHR---PLQKTNA--SV 92

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD- 119
            +HG+    L      +    +  DF    N+  +A +A FD       L R  K+ L  
Sbjct: 93  LIHGLGPSALAAGCDPAEALLDLLDFIG--NSPVLAFHAPFD----QRMLARALKESLGY 146

Query: 120 --PSRIIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              S  +D   +A   +P +      L+    R+G+ +  R  H A  D+ + +++ +
Sbjct: 147 RLQSPFLDIAELAPMLNPDTVLREAGLDDWVARFGLQVEER--HHASADAQVTAELAL 202


>gi|33862659|ref|NP_894219.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9313]
 gi|33634575|emb|CAE20561.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9313]
          Length = 309

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 18/169 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGLD K  + +E+GA+      +       FL P    N+ E+  ++ I  E 
Sbjct: 80  LIIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLLPV-ETNAAES--INRIPAEV 136

Query: 70  LK-DKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRII 124
            + D+P     + +  D+F    +     +AHNA FD   F   +L  ++K  L     +
Sbjct: 137 TRLDQP-----WRQGLDYFQALLDAADLLVAHNAGFDRQWFGKDQLPAVSKPWL---CTM 188

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + ++    +   SR  +  L   YG+ +   + H AL D   L++V+ +
Sbjct: 189 EDIAWPVDRQLRSRPSVRDLALAYGVPV--WAAHRALTDCIYLAEVFAR 235


>gi|306822243|ref|ZP_07455625.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|304554625|gb|EFM42530.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
          Length = 560

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 11/85 (12%)

Query: 94  WIAHNAKFDVGFI------NAELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNS 143
           ++AHNA+F+ GF        AE  R       D L  SR  D  SI   +HP   N L S
Sbjct: 440 YVAHNARFEHGFFMLNIAGYAESYRAGNITIIDTLPMSRRWDDGSIPDDEHPYGDNTLES 499

Query: 144 LCKRYGITISHRS-KHGALLDSHLL 167
             KR G   S +S +H  L D+H++
Sbjct: 500 YAKRQGALDSSKSERHLGLEDAHIM 524


>gi|152988293|ref|YP_001347274.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PA7]
 gi|150963451|gb|ABR85476.1| probable nuclease [Pseudomonas aeruginosa PA7]
          Length = 208

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 85/179 (47%), Gaps = 17/179 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEALKLHGITD 67
           I  D+ETT LD +   I+ IGAV L+   K       ++++ P    ++ E++++H +  
Sbjct: 33  ISLDLETTSLDPRRADILSIGAV-LVRRGKLVLGERLELYVEPPPSLDA-ESIRIHKLRR 90

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDT 126
             L+ +            F  ++    + +   FD+  +N  L QR +    +P+  I+ 
Sbjct: 91  ADLEGQLQLDEALRRLLAFIGDRPL--LGYYLSFDIAVLNRHLRQRFDLQLRNPT--IEV 146

Query: 127 LSIARRK----HPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            S+  RK     P +  DL  ++L +   + +S R  H AL D+  ++ ++++++ G +
Sbjct: 147 SSLYHRKVSRHFPDAHLDLRFDTLARALDVPVSGR--HTALGDAQAVALMFMRLLKGPA 203


>gi|295693069|ref|YP_003601679.1| CRISPR-associated protein, cas2 [Lactobacillus crispatus ST1]
 gi|295031175|emb|CBL50654.1| CRISPR-associated protein, Cas2 [Lactobacillus crispatus ST1]
          Length = 298

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 77/156 (49%), Gaps = 9/156 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIETTGL+ + D+II IGA++ L+ +   + +++        ++ E  K+  +    L
Sbjct: 131 VLDIETTGLNLEKDKIISIGAIKYLENNDCEKFYRLIKVDTEVPDNIE--KITQLNKGVL 188

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +K     +   +   F  ++    + +N  FD+ F+N + ++     L  +  +D LS 
Sbjct: 189 ANKGIDIKTALLDLRKFLADRIV--VGYNLPFDINFLNRDFKKYCHYSL-LNECVDLLSA 245

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
            ++K+    N  L+++ + Y   I + + H +L D+
Sbjct: 246 VKKKNVFLDNYHLSTVLENYN--IKNSNPHNSLADA 279


>gi|257483040|ref|ZP_05637081.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289624800|ref|ZP_06457754.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289650623|ref|ZP_06481966.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298489203|ref|ZP_07007222.1| Exonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298156285|gb|EFH97386.1| Exonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330871170|gb|EGH05879.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330891299|gb|EGH23960.1| exonuclease [Pseudomonas syringae pv. mori str. 301020]
 gi|331011724|gb|EGH91780.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 237

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP  L +HG
Sbjct: 40  QQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVL-IHG 98

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           +    +      +    +F +F  E  +  +  +A FD   ++  L+
Sbjct: 99  LAPSAIAAGSEPAEALLDFMEFVGE--SPILGFHAPFDQHMLSRALK 143


>gi|219852875|ref|YP_002467307.1| Exonuclease RNase T and DNA polymerase III [Methanosphaerula
           palustris E1-9c]
 gi|219547134|gb|ACL17584.1| Exonuclease RNase T and DNA polymerase III [Methanosphaerula
           palustris E1-9c]
          Length = 193

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 14/126 (11%)

Query: 10  IVFDIETTGLDSKN----------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           + FD ETTGL  K            RI+E+G V             + + P+G     E+
Sbjct: 3   LFFDTETTGLPKKKHASMHRVANWPRIVELGWVLTDTKGTVIEEAGLLVRPDGFSVPAES 62

Query: 60  LKLHGITDEFLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--D 116
             +HGIT E   ++ S  S + + F     EQ+     H   FD   + AEL R     D
Sbjct: 63  TAIHGITTEQATEQGSAISEVLARFL-LALEQSELICGHQVSFDHRVVGAELIRAGMPVD 121

Query: 117 PLDPSR 122
            LD  R
Sbjct: 122 QLDKPR 127


>gi|159528144|ref|YP_001542707.1| DNA polymerase III subunit epsilon [Fluoribacter dumoffii]
 gi|159157989|dbj|BAF92678.1| DNA polymerase III subunit epsilon [Fluoribacter dumoffii]
          Length = 306

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 28/128 (21%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNR--------TFQVFLCPNGRKNSPEALKL 62
           + D+ET G+D+  D IIEIG   +L +S +N         T+     P G+   PE  K+
Sbjct: 47  IIDLETMGMDATQDEIIEIG---MLSFSFSNEDGILGIKHTYNELNAP-GKPIPPEITKI 102

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLD 119
            GI +E +  K       +  W+F  +   E    I HNA FD  F+  ELQ     P D
Sbjct: 103 TGIRNEDVIGK-------TINWNFVLQVLKESHLIICHNAGFDRNFL--ELQT----PQD 149

Query: 120 PSRIIDTL 127
             + I TL
Sbjct: 150 IQKQIITL 157


>gi|160891921|ref|ZP_02072924.1| hypothetical protein BACUNI_04379 [Bacteroides uniformis ATCC 8492]
 gi|270296413|ref|ZP_06202613.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317480391|ref|ZP_07939491.1| exonuclease [Bacteroides sp. 4_1_36]
 gi|156858399|gb|EDO51830.1| hypothetical protein BACUNI_04379 [Bacteroides uniformis ATCC 8492]
 gi|270273817|gb|EFA19679.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316903469|gb|EFV25323.1| exonuclease [Bacteroides sp. 4_1_36]
          Length = 256

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 14/118 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + FD+ETTG +  +DRI+EI  +++     + SKT R       P       EA  +HGI
Sbjct: 10  VFFDLETTGTNINSDRIVEICYLKVYPNGNEESKTMRINPEMPIP------AEASAVHGI 63

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122
            D  + D P+F  +     +  + +  +    N+ +FD+  +  E  R   D +D SR
Sbjct: 64  YDADIADCPTFKEVARNIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVD-IDMSR 118


>gi|315224650|ref|ZP_07866473.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga
           ochracea F0287]
 gi|314945278|gb|EFS97304.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga
           ochracea F0287]
          Length = 1485

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 19/136 (13%)

Query: 10  IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPE 58
           ++FD ETTGL         DS N  R ++I A +L D        Q FL  P+G     +
Sbjct: 3   LIFDTETTGLPRRWDAPLSDSDNWPRAVQI-AWQLHDEWGALIEHQDFLIKPDGFDVPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEW-IAHNAKFDVGFINAELQRIN- 114
           A K+HGI+ +  + +       +E +  FNE    A++ +  N  FD+  + AE  R   
Sbjct: 62  AEKVHGISTQLAEAQ---GMPIAEVFKAFNEALSKAQYVVGQNIGFDINIMGAEFYRYGV 118

Query: 115 KDPLDPSRIIDTLSIA 130
           + PL    +IDT + A
Sbjct: 119 ESPLTQMPVIDTCTEA 134


>gi|253563502|ref|ZP_04840959.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5]
 gi|251947278|gb|EES87560.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5]
          Length = 175

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 26/175 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I F+  T  ++S       +G V + D   T+  + +   P         L +HGIT   
Sbjct: 8   IDFETATGYMESA----CAVGIVTVTDGEITDEYYSLIQPPENEYWRANML-VHGITPGM 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +  P F +I+ E       Q    +AHN +FD   +   ++    D        D LS+
Sbjct: 63  TESLPGFHAIYPEVKKRL--QGNVVVAHNEQFDRNVLKNSMRMYGLD-------YDELSL 113

Query: 130 ARRKHPSSR---------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R   + R          +L++ C+R GI + H   H AL D+   + +Y+  +
Sbjct: 114 PERWECTCRIYRSLGYKPVNLSACCEREGIELKH---HEALSDARGCAKLYLNFL 165


>gi|309802188|ref|ZP_07696296.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
 gi|308221071|gb|EFO77375.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
          Length = 552

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 11/85 (12%)

Query: 94  WIAHNAKFDVGFI------NAELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNS 143
           ++AHNA+F+ GF        AE  R       D L  SR  D  SI   +HP   N L S
Sbjct: 432 YVAHNARFEHGFFMLNIAGYAESYRAGNITIIDTLPMSRRWDDGSIPDDEHPYGDNTLES 491

Query: 144 LCKRYGITISHRS-KHGALLDSHLL 167
             KR G   S +S +H  L D+H++
Sbjct: 492 YAKRQGALDSSKSERHLGLEDAHIM 516


>gi|170024544|ref|YP_001721049.1| exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis YPIII]
 gi|186895217|ref|YP_001872329.1| exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis PB1/+]
 gi|169751078|gb|ACA68596.1| Exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis YPIII]
 gi|186698243|gb|ACC88872.1| Exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis PB1/+]
          Length = 217

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 8/97 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGL + +  IIEI  ++      T +     L    +    EA  +HGIT++ 
Sbjct: 46  LILDTETTGLGN-DAEIIEISIIDC-----TGKILLDTLVKPIKAIPAEATAIHGITNDI 99

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           + D P++  I  +F    N++    + +NA FD   I
Sbjct: 100 VADAPTWRDIHWQFMVLTNDRTL--LIYNASFDSRLI 134


>gi|26987095|ref|NP_742520.1| DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440]
 gi|24981722|gb|AAN65984.1|AE016227_5 exonuclease [Pseudomonas putida KT2440]
          Length = 236

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 24/178 (13%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKT-NRTFQVFLCPNGRKNSPEAL 60
           + R +V D+ET+GL+   D+++ IGAV +    +D+++   RT      P  + N+  ++
Sbjct: 38  EQRWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHR---PLQKTNA--SV 92

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD- 119
            +HG+    L      +    +  DF    N+  +A +A FD       L R  K+ L  
Sbjct: 93  LIHGLGPSALAAGCDPAEALLDLLDFIG--NSPVLAFHAPFD----QRMLARALKESLGY 146

Query: 120 --PSRIIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              S  +D   +A   +P +      L+    R+G+ +  R  H A  D+ + +++ +
Sbjct: 147 RLQSPFLDIAELAPMLNPDTVLREAGLDDWVARFGLQVEER--HHASADAQVTAELAL 202


>gi|313206803|ref|YP_004045980.1| DNA polymerase iii, epsilon subunit [Riemerella anatipestifer DSM
           15868]
 gi|312446119|gb|ADQ82474.1| DNA polymerase III, epsilon subunit [Riemerella anatipestifer DSM
           15868]
 gi|315023876|gb|EFT36878.1| DNA polymerase III epsilon subunit [Riemerella anatipestifer RA-YM]
 gi|325335757|gb|ADZ12031.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases
           [Riemerella anatipestifer RA-GD]
          Length = 407

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 9/166 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V DIE+ G   + + IIE+ A+   D  K    F   + P     S    KL GIT + +
Sbjct: 4   VIDIESNGGAFREECIIEV-AIYRYDGHKIVDQFISMVNPEA-DISHFVQKLTGITPKMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K  P F  I     +    + +  + HN  FD   +    +R+          +DT+ +A
Sbjct: 62  KTAPKFHEIAKRIIEI--TEGSTLVGHNVDFDYRMLRQSFKRLGYHF--SIETLDTIPLA 117

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++  P+  +  L  L K  GI ++    H A  D+    D++  +M
Sbjct: 118 KKLIPNEESYSLGKLVKSLGIPLAEH--HRASSDARATLDLFKLLM 161


>gi|262182582|ref|ZP_06042003.1| DNA polymerase III subunit epsilon [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 223

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 23/161 (14%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +  R + FD+ETT +  K  RI+   A+  +D  + ++  +  L   G +   EA K+HG
Sbjct: 4   DATRMLSFDLETTSVKPKEARIV-TSALVRIDGREVDK--REMLADPGVEIPEEAAKIHG 60

Query: 65  ITDEFLKD---------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RI 113
           IT E  +          K +  SI+ + WD    +    I +NA +D+  + A      +
Sbjct: 61  ITTEKARAEGRPHEEVLKETVDSIY-QAWD----EGLTLIVYNAAYDLSVLRALTGDFTV 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154
           N    DP  +ID +    RK    +  L  +   YG+ +S+
Sbjct: 116 NGPVFDPF-VIDRVKDKWRK---GKRTLEEVSAHYGVELSN 152


>gi|126665477|ref|ZP_01736459.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
 gi|126630105|gb|EBA00721.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
          Length = 245

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 23/176 (13%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +++  +  D ETTGL +    II +G V   L+  + +      + P    +   ++ +H
Sbjct: 51  SQVPMVAIDFETTGLSATEHSIISVGLVPFTLEGIQLSAARHWLVKPKLALHQ-TSVTIH 109

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSR 122
           GIT   L+  P    I  E  +    +    + H    +  F++  L  R+ +    P  
Sbjct: 110 GITHADLEQAPDLVDILPELLECLAGRLP--VVHYRDIERPFLDVALRHRLQEGIQFP-- 165

Query: 123 IIDTLSIARRKHPSSRNDLNSLCK--------------RYGITISHRSKHGALLDS 164
           ++DT++I    HP  R       +              RYG  + H + H AL+D+
Sbjct: 166 LLDTMAIEAHLHPDRRPTFWQTWRGKKPLSIRLSDSRLRYG--LPHYAAHNALMDA 219


>gi|218265111|ref|ZP_03478699.1| hypothetical protein PRABACTJOHN_04409 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221600|gb|EEC94250.1| hypothetical protein PRABACTJOHN_04409 [Parabacteroides johnsonii
           DSM 18315]
          Length = 174

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 9/169 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R    D ET   + K   I  IG + +++ +K   +    + P     +     +HGIT 
Sbjct: 3   RFAAIDFETA--NGKRSSICSIG-IAIIEDNKVIDSIYTLVRPYPNFYTRFTTAVHGITM 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +   D P F  ++SE       Q+   +AHN+ FD G + A  +  +       +   T 
Sbjct: 60  QDTIDSPDFEEVWSEIAG--KLQDIPLVAHNSPFDEGCLRAAHEAYDL-AYPKYQFYCTC 116

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++RR +P   N  L ++    G  +++   H A+ D++  + +   MM
Sbjct: 117 RLSRRMYPFLVNHQLQTVAAHCGYDLTYH--HHAMADAYACAHIAATMM 163


>gi|110803621|ref|YP_698953.1| DNA polymerase III, epsilon subunit [Clostridium perfringens SM101]
 gi|110684122|gb|ABG87492.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens SM101]
          Length = 204

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 7/124 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ + FD ETTG+  K   I ++  + +   +K  +T    +     +  PEA ++HG +
Sbjct: 1   MKLLFFDTETTGV--KPGSICQLSYILVNTSTKPQKTIGKNIFFTVDEMEPEAERIHGFS 58

Query: 67  DE---FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            E    L +   F  ++++F + F E +   I HN +FD+ F+  EL  +  +  +P+ +
Sbjct: 59  LEKLYELSEGMYFEDLYADFINDFLEADF-IIGHNVQFDIKFLKHELLGLG-EFFEPNNV 116

Query: 124 IDTL 127
             T+
Sbjct: 117 FCTM 120


>gi|238853316|ref|ZP_04643700.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 202-4]
 gi|300362992|ref|ZP_07059162.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           JV-V03]
 gi|238834110|gb|EEQ26363.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 202-4]
 gi|300353042|gb|EFJ68920.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           JV-V03]
          Length = 320

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 9/157 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDEF 69
           + D+ETTGL    DRI E+G ++ + + +   TF ++   P+  K      KL+GI +  
Sbjct: 35  LIDVETTGLSPYRDRITEMGGLK-VRHGEVVATFSELVKFPDNNKVPAFITKLNGIDEAA 93

Query: 70  LKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +++K  P   +I  ++ +F        + +N  FD+ F+    ++ +   L+ +  +D  
Sbjct: 94  IEEKGLPVQEAI-KKYREFIGSDPI--VGYNVNFDLNFVYDLAEKYHLTVLN-NDYVDVY 149

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            +AR  +P  R++    C  + + I+   +H  L D 
Sbjct: 150 RLARSFYPQERHNRLLDC-MHRMNIAENQEHRGLDDC 185


>gi|227487527|ref|ZP_03917843.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC
            51867]
 gi|227092509|gb|EEI27821.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC
            51867]
          Length = 2526

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 6/104 (5%)

Query: 11   VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            V +++T+G+ S+ DRIIEIG V      K   T+   + P  R  S  A  +HGI++   
Sbjct: 2131 VLNVKTSGI-SERDRIIEIGIVLATLNGKVEGTYTTLINPR-RSFSDSA--IHGISERMT 2186

Query: 71   KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
               P F  +  +  +  + +    IAH+A F    +  E  R N
Sbjct: 2187 VAAPVFEEVADDIAELLDRRI--LIAHDAPFVSKQLGREFSRSN 2228


>gi|46371957|gb|AAS90610.1| conserved hypothetical protein [uncultured soil bacterium]
          Length = 195

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGL    D +++IG ++    SK        + P  R       ++HG+T+E 
Sbjct: 27  VVLDTETTGL-GPTDEVVQIGIID----SKGRTVLNTMVRPT-RPVPSVVTRIHGLTNEK 80

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           L +   FS ++              IA+N  FD
Sbjct: 81  LAEASPFSDLYVSLSSIL--AGVTVIAYNMDFD 111


>gi|198274686|ref|ZP_03207218.1| hypothetical protein BACPLE_00842 [Bacteroides plebeius DSM 17135]
 gi|198272133|gb|EDY96402.1| hypothetical protein BACPLE_00842 [Bacteroides plebeius DSM 17135]
          Length = 258

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           + FD+ETTG +   DRI+EI  +++  Y   N   +  L  N   + PE +  +HGI DE
Sbjct: 10  VFFDLETTGTNINTDRIVEICYLKV--YPNGNEEAKT-LRINPEMHIPETSTAIHGIHDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
            + D P+F  +  +     + + A+    N+ +FDV  +  E  R   D
Sbjct: 67  DVADCPTFKEVAKDIAR--DIEGADIAGFNSNRFDVPVLVEEFLRAGID 113


>gi|169342705|ref|ZP_02863746.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens C str. JGS1495]
 gi|169299211|gb|EDS81281.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens C str. JGS1495]
          Length = 204

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 7/124 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ + FD ETTG+  K   I ++  + +   +K  +T    +     +  PEA ++HG +
Sbjct: 1   MKLLFFDTETTGV--KPGSICQLSYILVDTSTKPQKTIGKNIFFTVDEMEPEAERIHGFS 58

Query: 67  DE---FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            E    L +   F  ++++F + F E +   I HN +FD+ F+  EL  +  +  +P+ +
Sbjct: 59  LEKLYELSEGMHFEDLYADFINDFLEADF-IIGHNVQFDIKFLKHELLGLG-EFFEPNNV 116

Query: 124 IDTL 127
             T+
Sbjct: 117 FCTM 120


>gi|325171157|ref|YP_004251132.1| hypothetical protein ViPhICP1_gp191 [Vibrio phage ICP1]
 gi|323512552|gb|ADX88007.1| conserved hypothetical protein [Vibrio phage ICP1]
 gi|323512778|gb|ADX88232.1| gp35 [Vibrio phage ICP1_2006_D]
 gi|323513006|gb|ADX88459.1| gp35 [Vibrio phage ICP1_2006_C]
 gi|323513231|gb|ADX88683.1| hypothetical protein TUST1-159_00915 [Vibrio phage ICP1_2006_B]
 gi|323513458|gb|ADX88909.1| hypothetical protein TUST1-17_00915 [Vibrio phage ICP1_2006_A]
 gi|323513689|gb|ADX89139.1| gp35 [Vibrio phage ICP1_2005_A]
 gi|323513920|gb|ADX89369.1| gp35 [Vibrio phage ICP1_2001_A]
 gi|323514148|gb|ADX89596.1| hypothetical protein TUST1-10_00920 [Vibrio phage ICP1_2004_A]
          Length = 337

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 79  IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138
           + SE W+  N+ +     ++ +FD+  +NA L      P  P +  DTL IA+RK   + 
Sbjct: 143 LLSELWELMNQADIVVGQNHRRFDIKRLNARLIMNGFRPYSPVKTEDTLDIAKRKFGFTS 202

Query: 139 NDLNSLCKRYGITISHRSKHG 159
           N L  +  +  +    + KHG
Sbjct: 203 NKLEWMTDKLCVEFK-KQKHG 222


>gi|256839708|ref|ZP_05545217.1| exonuclease [Parabacteroides sp. D13]
 gi|256738638|gb|EEU51963.1| exonuclease [Parabacteroides sp. D13]
          Length = 192

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 79/184 (42%), Gaps = 21/184 (11%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65
           M+ + FD+ETTG+    + + +I    ++D   T  +F   +CP+ +     EAL++  +
Sbjct: 1   MKLLFFDLETTGIKYWRNGVHQISGEIVID-GVTKESFNFNVCPHPQCEIEEEALRICNV 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA---------HNAKFDVGFINAELQRINKD 116
           + E ++  P    ++ +F +  ++   ++           +NA FD  F+ A   + N D
Sbjct: 60  SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQ-NGD 118

Query: 117 PLDPS---------RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
               S          ++ T  + R++H  +     ++ +  GI I     H A  D  L 
Sbjct: 119 NYFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLT 178

Query: 168 SDVY 171
             +Y
Sbjct: 179 KKIY 182


>gi|167762354|ref|ZP_02434481.1| hypothetical protein BACSTE_00708 [Bacteroides stercoris ATCC
           43183]
 gi|167699997|gb|EDS16576.1| hypothetical protein BACSTE_00708 [Bacteroides stercoris ATCC
           43183]
          Length = 256

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 6/114 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTG +  +DRI+EI  +++  Y   N   +            EA  +HGI DE 
Sbjct: 10  VFFDLETTGTNINSDRIVEICYLKV--YPNGNEETKTMRINPEMHIPEEASAVHGIYDED 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122
           + + P+F  +     +  + +  +    N+ +FD+  +  E  R + D +D SR
Sbjct: 68  VAECPTFKEVARNIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRADVD-IDMSR 118


>gi|53712466|ref|YP_098458.1| DNA polymerase III subunit epsilon [Bacteroides fragilis YCH46]
 gi|60680667|ref|YP_210811.1| putative exonuclease [Bacteroides fragilis NCTC 9343]
 gi|265762628|ref|ZP_06091196.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
 gi|52215331|dbj|BAD47924.1| probable DNA polymerase III epsilon chain [Bacteroides fragilis
           YCH46]
 gi|60492101|emb|CAH06864.1| putative exonuclease [Bacteroides fragilis NCTC 9343]
 gi|263255236|gb|EEZ26582.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
          Length = 175

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 26/175 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I F+  T  ++S       +G V + D   T+  + +   P         L +HGIT   
Sbjct: 8   IDFETATGYMESA----CAVGIVTVTDGEITDEYYSLIQPPENEYWRANML-VHGITPGM 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +  P F +I+ E       Q    +AHN +FD   +   ++    D        D LS+
Sbjct: 63  TESLPGFHAIYPEVKKRL--QGNVVVAHNEQFDRNVLKNTMRMYGLD-------YDELSL 113

Query: 130 ARRKHPSSR---------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R   + R          +L++ C+R GI + H   H AL D+   + +Y+  +
Sbjct: 114 PERWECTCRIYRSLGYKPVNLSACCEREGIELKH---HEALSDARGCAKLYLNFL 165


>gi|116630207|ref|YP_815379.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           ATCC 33323]
 gi|282852827|ref|ZP_06262168.1| exonuclease [Lactobacillus gasseri 224-1]
 gi|116095789|gb|ABJ60941.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus gasseri ATCC 33323]
 gi|282555935|gb|EFB61556.1| exonuclease [Lactobacillus gasseri 224-1]
          Length = 320

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 9/157 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDEF 69
           + D+ETTGL    DRI E+G ++ + + +   TF ++   P+  K      KL+GI +  
Sbjct: 35  LIDVETTGLSPYRDRITEMGGLK-VRHGEVVATFSELVKFPDSNKVPTFITKLNGIDEAA 93

Query: 70  LKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +++K  P   +I  ++ +F        + +N  FD+ F+    ++ +   L+ +  +D  
Sbjct: 94  IEEKGLPVQEAI-KKYREFIGSDPI--VGYNVNFDLNFVYDLAEKYHLTVLN-NDYVDVY 149

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            +AR  +P  R++    C  + + I+   +H  L D 
Sbjct: 150 RLARSFYPQERHNRLLDC-MHRMNIAENQEHRGLDDC 185


>gi|226311041|ref|YP_002770935.1| hypothetical protein BBR47_14540 [Brevibacillus brevis NBRC 100599]
 gi|226093989|dbj|BAH42431.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 113

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 17/114 (14%)

Query: 7   MRKIVFDIETTGLD---SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKL 62
           M  I+FD+E T  +   +K + IIEIGAV+L +       FQ F+ P      S    KL
Sbjct: 1   MNYIIFDLEATCWENDRTKQNEIIEIGAVKLNENLAVIGEFQTFIKPKLNPILSDFCKKL 60

Query: 63  HGITDEFLKDKPSFSSIFSEF------------WDFFNEQNAEWIAHNAKFDVG 104
             I+ + +   PSF    S F            W F++++  + I +++K+ +G
Sbjct: 61  TSISQKEVDQAPSFGEAISHFQNWIGSEYHLCSWGFYDKKQLK-IKYSSKYLIG 113


>gi|308049484|ref|YP_003913050.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
 gi|307631674|gb|ADN75976.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
          Length = 249

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 79/186 (42%), Gaps = 11/186 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTG++   D II IG V         +    ++    R  + E++ +HGIT   
Sbjct: 60  VALDFETTGMNPDQDAIISIGLVPFTQQRIQCKGSAHWIVNPNRPLNEESVVIHGITHSD 119

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTLS 128
           L+  P    +  +  D    +    + H  + +  F++  L+ R+ +    P  ++DTL 
Sbjct: 120 LEQAPDLEVVLDQVLDALAGKIV--VVHYKQIEREFLDRALRARLGEGIRFP--VVDTLD 175

Query: 129 I-ARRKHPSSRNDLNSLCKRYGITI---SHRSKHG--ALLDSHLLSDVYIKMMVGGSQIN 182
           I A  +H + +   N L  +   ++     R ++G  A    H L+D      +  +Q+ 
Sbjct: 176 IEAAIQHRACQGWFNRLRGKKPDSVRLGRARERYGLPAYQPHHALTDALATAELLQAQLA 235

Query: 183 FGFKTN 188
           + F  +
Sbjct: 236 WHFSPD 241


>gi|18310648|ref|NP_562582.1| hypothetical protein CPE1666 [Clostridium perfringens str. 13]
 gi|110800096|ref|YP_696353.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens ATCC 13124]
 gi|168211446|ref|ZP_02637071.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|168214501|ref|ZP_02640126.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens CPE str. F4969]
 gi|168216953|ref|ZP_02642578.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens NCTC 8239]
 gi|182626374|ref|ZP_02954128.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens D str. JGS1721]
 gi|18145329|dbj|BAB81372.1| hypothetical protein [Clostridium perfringens str. 13]
 gi|110674743|gb|ABG83730.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens ATCC 13124]
 gi|170710592|gb|EDT22774.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|170714024|gb|EDT26206.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens CPE str. F4969]
 gi|177908325|gb|EDT70873.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens D str. JGS1721]
 gi|182380871|gb|EDT78350.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens NCTC 8239]
          Length = 204

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 7/124 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ + FD ETTG+  K   I ++  + +   +K  +T    +     +  PEA ++HG +
Sbjct: 1   MKLLFFDTETTGV--KPGSICQLSYILVDTSTKPQKTIGKNIFFTVDEMEPEAERIHGFS 58

Query: 67  DE---FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            E    L +   F  ++++F + F E +   I HN +FD+ F+  EL  +  +  +P+ +
Sbjct: 59  LEKLYELSEGMYFEDLYADFINDFLEADF-IIGHNVQFDIKFLKHELLGLG-EFFEPNNV 116

Query: 124 IDTL 127
             T+
Sbjct: 117 FCTM 120


>gi|77408519|ref|ZP_00785256.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae COH1]
 gi|77172876|gb|EAO76008.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae COH1]
          Length = 835

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L   P F  +    +     ++  ++AHN KFD   +  +L     +   P 
Sbjct: 73  LTGITDKQLVKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGFELRTPR 130

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDT+ +++  +P   +  L +L +   I ++    H A+ D+   + ++IK+
Sbjct: 131 --IDTVELSQVFYPCLEKYSLGALAESLNIELT--DAHTAIADARATAQLFIKL 180


>gi|237746008|ref|ZP_04576488.1| exonuclease [Oxalobacter formigenes HOxBLS]
 gi|229377359|gb|EEO27450.1| exonuclease [Oxalobacter formigenes HOxBLS]
          Length = 305

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 12/104 (11%)

Query: 10  IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNR---TFQVFLCP---NGRKNSPEALKL 62
           IVF D ETTGL S+ D IIE+G V    +S + +   +    L      G+  SP   +L
Sbjct: 56  IVFLDTETTGLSSETDVIIELGLVR-ASFSPSKKKLVSLDAILSAYEDPGKPLSPFITEL 114

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
            GITDE ++ +     I  +    F E  A  +AHNA FD  F 
Sbjct: 115 TGITDEKVRGQ----RIDEKTVAGFLENAALIVAHNAAFDRPFF 154


>gi|51244817|ref|YP_064701.1| DNA polymerase III subunit epsilon [Desulfotalea psychrophila
           LSv54]
 gi|50875854|emb|CAG35694.1| probable DNA polymerase III, epsilon chain [Desulfotalea
           psychrophila LSv54]
          Length = 239

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 23/171 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGLD + D I+ IG +    +    +    ++         +++ +HGIT   
Sbjct: 50  VALDFETTGLDLQKDGILSIGLIPFDTHRIYCKKAAYWVINPHSPLGEDSVIIHGITHSD 109

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           + + P    ++ E     NE   +  + H  + +  F++  L  +  + +    +IDT+ 
Sbjct: 110 INNAPGLGKVWQE---VLNELAGKIVVVHYREIERKFLDKALHELLGEGIA-FPVIDTMQ 165

Query: 129 IA---------------RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           I                + +HP S    NS   RYG  + H   H AL D+
Sbjct: 166 IESIIQQKKRGGLWNWLKGRHPESIRLANSRS-RYG--LPHYQVHHALTDA 213


>gi|330985867|gb|EGH83970.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 237

 Score = 38.9 bits (89), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP  L +HG
Sbjct: 40  QQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVL-IHG 98

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           +    +      +    +F +F  E  +  +  +A FD   ++  L+
Sbjct: 99  LAPSAIAAGCEPAEALLDFMEFVGE--SPILGFHAPFDQHMLSRALK 143


>gi|227875110|ref|ZP_03993255.1| DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35243]
 gi|227844388|gb|EEJ54552.1| DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35243]
          Length = 258

 Score = 38.9 bits (89), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 18/177 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+  + DR   I    L+       T   ++   G     +A +++G+TDE+L+
Sbjct: 37  FDTETTGVWVRRDR---IATASLIRRVGGEDTAYNWVINPGVPMPVKASEVNGLTDEYLE 93

Query: 72  ---DKP--SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP------ 120
              ++P  + + I SE     +      +  N  FD   + AEL R     L        
Sbjct: 94  KHGEQPAVALAEIASELAAAMS-SGVPVVGFNVAFDFEILEAELARYELPTLRARLGGRI 152

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +ID L + R   ++   +  L ++C+ YG+   +R+ H A  D     D+   M+
Sbjct: 153 APVIDPLVLDRTLDRYRRGKRKLATVCEAYGLD-GNRAFHQADSDVTATLDLLGAMI 208


>gi|269977856|ref|ZP_06184812.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
 gi|306818377|ref|ZP_07452103.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|307701469|ref|ZP_07638488.1| exonuclease [Mobiluncus mulieris FB024-16]
 gi|269933936|gb|EEZ90514.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
 gi|304648886|gb|EFM46185.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|307613379|gb|EFN92629.1| exonuclease [Mobiluncus mulieris FB024-16]
          Length = 258

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 18/162 (11%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+  + DR   I    L+       T   ++   G     +A +++G+TDE+L+
Sbjct: 37  FDTETTGVWVRRDR---IATASLIRRVGGEDTAYNWVINPGVPMPVKASEVNGLTDEYLE 93

Query: 72  ---DKP--SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP------ 120
              ++P  + + I SE     +      +  N  FD   + AEL R     L        
Sbjct: 94  KHGEQPAVALAEIASELAAAMS-SGVPVVGFNVAFDFEILEAELARYELPTLRARLGGRI 152

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGA 160
           + +ID L + R   ++   +  L ++C+ YG+   +R+ H A
Sbjct: 153 APVIDPLVLDRTLDRYRRGKRKLATVCEAYGLD-GNRAFHQA 193


>gi|330721640|gb|EGG99654.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC2047]
          Length = 224

 Score = 38.9 bits (89), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 12/126 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +++  +V D+ETT LD+ N  ++ IG V +    +  +     F       G     ++ 
Sbjct: 37  DQLEFLVVDLETTSLDADNGEVVSIGWVPVKSGSIQLADAEHHFSKVDAGVG-----QSA 91

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +H I D  L D  S ++I + F           + H+A+ D+ F+N   +++   PL  
Sbjct: 92  VIHHIRDSELHDAASVTAIMNRF--LAVAAGKVLVFHHAELDMAFLNRLSKKLYSVPL-L 148

Query: 121 SRIIDT 126
           + I+DT
Sbjct: 149 APIVDT 154


>gi|228477577|ref|ZP_04062210.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           salivarius SK126]
 gi|228250721|gb|EEK09919.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           salivarius SK126]
          Length = 828

 Score = 38.9 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  KN  +  + D+E T   S    II++G V ++   +    F   + P+   +    +
Sbjct: 1   MSEKNTNKYAIVDLEATSASSTAS-IIQVGIV-IMQNGQVIDEFASDVNPHQELDD-HII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I    ++    ++  ++AHN KFD   + AE   +    L  
Sbjct: 58  HLTGITDQQLAQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLL-AEALFMEGFELRT 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R +DT+ +A+  +P+  +  L+ L K   + ++    H A+ D+     +   +M
Sbjct: 115 PR-VDTVELAQVFYPTLEQYKLSHLSKVLNLDLAQ--AHTAIEDARATGQLLFHLM 167


>gi|54309681|ref|YP_130701.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9]
 gi|46914119|emb|CAG20899.1| putative DNA polymerase III, epsilon subunit [Photobacterium
           profundum SS9]
          Length = 239

 Score = 38.9 bits (89), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 23/171 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL++K D II IG V   L+    NR     + P  + N  +++ +H IT  
Sbjct: 50  VAMDFETTGLNAKKDGIITIGLVPFTLNRVYINRAQHWTVRPRQKLNE-QSVVIHNITHN 108

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P  S +          +    + H  + +  F++  L+   K+ ++   +IDTL 
Sbjct: 109 DILDAPDLSEVIEPVLAALAGRVV--VVHYRRIEREFLDRALKARIKEGIE-FPVIDTLE 165

Query: 129 IARR---------------KHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +  +               K P S   L    KRYG+     + H AL D+
Sbjct: 166 LEAQIQQRLNGGFWNKLKGKKPQSVR-LAQARKRYGLPAY--TPHHALTDA 213


>gi|332662172|ref|YP_004444960.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332330986|gb|AEE48087.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 194

 Score = 38.9 bits (89), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 13/123 (10%)

Query: 10  IVFDIETTGLD----------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           +  D ETTGL           +   R++++  +   +           + P G       
Sbjct: 3   LFLDTETTGLPLNWSAPISRVNNWPRMVQLAGLLYDEEGTLLEQLNYLVRPEGYTIPAAV 62

Query: 60  LKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDP 117
           +++HGIT E  L +    + + ++F     E++   +AHN  FD   + AE  R + +DP
Sbjct: 63  VRIHGITTERALAEGVPVAQVLNDFRSIL-EKSKLLVAHNVNFDHAIVGAEYHRYVKEDP 121

Query: 118 LDP 120
           L P
Sbjct: 122 LLP 124


>gi|322516980|ref|ZP_08069870.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus vestibularis ATCC 49124]
 gi|322124463|gb|EFX95958.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus vestibularis ATCC 49124]
          Length = 828

 Score = 38.9 bits (89), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  KN  +  + D+E T   S    II++G V ++        F   + P+   +    +
Sbjct: 1   MSEKNTNKYAIVDLEATS-ASSTACIIQVGIV-IMQNGLVIDEFASDVNPHQELDD-HIV 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I    ++    ++  ++AHN KFD   + AE   +    L  
Sbjct: 58  HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLL-AEALFMEGFELRT 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R +DT+ +A+  +P+  +  L+ L +   + ++    H A+ D+     +   +M
Sbjct: 115 PR-VDTVELAQVFYPTLEQYKLSYLSQVLNLDLAQ--AHTAIEDARATGQLLFHLM 167


>gi|294791066|ref|ZP_06756224.1| DNA polymerase III, epsilon subunit [Scardovia inopinata F0304]
 gi|294458963|gb|EFG27316.1| DNA polymerase III, epsilon subunit [Scardovia inopinata F0304]
          Length = 282

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 9/114 (7%)

Query: 12  FDIETTGLDSKNDRIIEIGAV---ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           FD ETTG  +  D I+    V     L ++    + Q ++   G   +P A +++G TD+
Sbjct: 29  FDTETTGTRAGKDAIVSASLVLRNPALGFN--GDSTQDWIINPGIPMNPRASQVNGFTDD 86

Query: 69  FLKDKPS--FSSIFSEFWDFFNEQ--NAEWIAHNAKFDVGFINAELQRINKDPL 118
           +L++  +    SI          Q  N   +A+NA FD+  +N +LQ++ ++ L
Sbjct: 87  YLREHGANQADSIALIANSIIKAQIRNIPLLAYNAPFDITMLNGDLQKLGQETL 140


>gi|268316050|ref|YP_003289769.1| Exonuclease RNase T and DNA polymerase III [Rhodothermus marinus
           DSM 4252]
 gi|262333584|gb|ACY47381.1| Exonuclease RNase T and DNA polymerase III [Rhodothermus marinus
           DSM 4252]
          Length = 167

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 30/167 (17%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ET+GL  + DR   I  + LL                    + E L L   T   
Sbjct: 9   LFFDVETSGL--RPDRGAAIVELALL-------------------GAREPLLLWKGTSAQ 47

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
              +  F  +F+      + +    + HN +FD  F+  E  R+    + P R IDTL +
Sbjct: 48  RLQRAQFRELFA------HVREGVIVGHNLRFDFWFVTYEAGRLGLA-VPPIRFIDTLGL 100

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ARR  P   +  L +L    GI    +  H A+ D+     ++ K++
Sbjct: 101 ARRLLPEQADYRLVALLHALGIE-PDKPLHTAVADAQATRALFWKLV 146


>gi|319744611|gb|EFV96961.1| DNA polymerase III [Streptococcus agalactiae ATCC 13813]
          Length = 821

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L   P F  +    +     ++  ++AHN KFD   +  +L     +   P 
Sbjct: 59  LTGITDKQLVKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGFELRTPR 116

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDT+ +++  +P   +  L +L +   I ++    H A+ D+   + ++IK+
Sbjct: 117 --IDTVELSQVFYPCLEKYSLGALAESLNIELT--DAHTAIADARATAQLFIKL 166


>gi|127510985|ref|YP_001092182.1| DNA polymerase III subunit epsilon [Shewanella loihica PV-4]
 gi|126636280|gb|ABO21923.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica
           PV-4]
          Length = 239

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 15/133 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+   D I+ IG V   L     NR     + P   + + E++ +HGIT  
Sbjct: 50  LAMDFETTGLNVDKDDIVSIGTVPFTLRRIFLNRAQHWTVRPR-EQLAEESVIIHGITHS 108

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFIN-AELQRINKDPLDPSRIID 125
            + D P  S+IF +      EQ A    + H    +  F+  A ++RI++    P  +ID
Sbjct: 109 DILDAPDLSAIFEQVL----EQMAGKIMVVHYQAIERLFLERALIRRIHQGIEFP--LID 162

Query: 126 TLS----IARRKH 134
           T++    I +R+H
Sbjct: 163 TMALESEIQKRQH 175


>gi|12698423|gb|AAK01537.1| DNA polymerase III [Pseudomonas aeruginosa]
          Length = 204

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 19/130 (14%)

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKD 116
           +A ++HGI +  +K  P +  +     D   +   +W +AHNA  D      E+ + +  
Sbjct: 58  QAKRVHGIGNSSVKGSPVWEELRG---DVEQQLQGKWFVAHNASIDY-----EVMKRHLP 109

Query: 117 PLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGI--TIS---HR----SKHGALLDSHL 166
              P  +IDTL +AR  +P + +  L++L    G+   +S   HR    ++  ALL S L
Sbjct: 110 DWAPVGVIDTLKLARHVYPDAESHSLSALLAMTGLDSEVSGELHRAGEDARVTALLLSRL 169

Query: 167 LSDVYIKMMV 176
           L D  IK  +
Sbjct: 170 LKDSLIKSWI 179


>gi|312863243|ref|ZP_07723481.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           vestibularis F0396]
 gi|311100779|gb|EFQ58984.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           vestibularis F0396]
          Length = 839

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  KN  +  + D+E T   S    II++G V ++        F   + P+   +    +
Sbjct: 12  MSEKNTNKYAIVDLEATS-ASSTACIIQVGIV-IMQNGLVIDEFASDVNPHQELDD-HIV 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I    ++    ++  ++AHN KFD   + AE   +    L  
Sbjct: 69  HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLL-AEALFMEGFELRT 125

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R +DT+ +A+  +P+  +  L+ L +   + ++    H A+ D+     +   +M
Sbjct: 126 PR-VDTVELAQVFYPTLEQYKLSYLSQVLNLDLAQ--AHTAIEDARATGQLLFHLM 178


>gi|305682188|ref|ZP_07404992.1| exonuclease [Corynebacterium matruchotii ATCC 14266]
 gi|305658661|gb|EFM48164.1| exonuclease [Corynebacterium matruchotii ATCC 14266]
          Length = 230

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 23/169 (13%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N ++ + FD+ETT  +    RI+    V +          Q FL   G      A K+HG
Sbjct: 9   NPLKVLSFDLETTSANPFEARIVTSALVHI---DSGGAHPQEFLADPGVPIPEAATKVHG 65

Query: 65  ITDEFLKDKPS---------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRIN 114
           IT E+ ++  S          ++I   + D +       I +NA +D+  +++ E   + 
Sbjct: 66  ITTEYAREHGSPHADVLAETIAAIRKAWTDGYT-----LIVYNASYDLTVLHSLEPGFLI 120

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGAL 161
             P+    ++D L    R+    +  L +LC+ Y + +  +H +   AL
Sbjct: 121 TGPVYDPYVMDKLLDPYRR---GKRTLTALCEEYQVRLENAHEATSDAL 166


>gi|114776398|ref|ZP_01451443.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans
           PV-1]
 gi|114553228|gb|EAU55626.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans
           PV-1]
          Length = 310

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-----KLHG 64
           +V D ETTGLD+  D IIE+G V     + + R ++V    +G ++    L     +L G
Sbjct: 40  LVIDTETTGLDTTADTIIELGFVAFSYDAGSGRIYEVLHNYDGFEDPGAPLSDVVKQLTG 99

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           I+D  +  +        E W    ++    IAHNA FD
Sbjct: 100 ISDAMVAGQ-RLDDAEIETW---LKKADLLIAHNAAFD 133


>gi|149020300|ref|ZP_01835192.1| hypothetical protein CGSSp23BS72_05994 [Streptococcus pneumoniae
           SP23-BS72]
 gi|147930602|gb|EDK81584.1| hypothetical protein CGSSp23BS72_05994 [Streptococcus pneumoniae
           SP23-BS72]
          Length = 308

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 11/167 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D+ET   +S    +  IG V+ +D  + + +F   + P   K S   +K+H I  E 
Sbjct: 6   IALDVETA--NSFRGSLCSIGLVKFIDGQEVD-SFYTLINPE-EKFSSRNIKIHAIKPED 61

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P+F  +  E  +F +  N   +AHNA+FD  +   ++    + P D  +   +  +
Sbjct: 62  VIGAPTFPEVQKEIINFID--NLPIVAHNARFD-AYALQDVYLKYEIPFDNIQYFCSYQV 118

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +       N  L++L + + I++ H   H AL D+     + ++++
Sbjct: 119 CKIILTDLPNHKLHTLAEHFKISLDH---HNALSDARACGLILLEIL 162


>gi|1794167|dbj|BAA11217.1| unnamed protein product [Vibrio parahaemolyticus]
          Length = 234

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 15/188 (7%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++  +V D ETTG + + DR+I IG VE+ + + + N    VF+  +      E++K+H 
Sbjct: 45  ELDTLVLDFETTGFNPEVDRVISIGWVEIRNSNIRLNSARHVFI-NHAIDICHESVKVHH 103

Query: 65  ITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           I  E L     S  + F++  D         +AH    +  F+   ++   ++   P   
Sbjct: 104 IRPETLHVSGISEQAAFTQLLDVI--AGKILVAHGCIMEQRFLEQYIKMKYQNLKLPLIW 161

Query: 124 IDTLSIA--RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +DTL I   R +   +R+D      R  + +     H AL D+   +++Y+      +QI
Sbjct: 162 LDTLKIEQYRTQLRPTRSDWRLSSIRKELNLPTYQAHNALNDAIATAELYL------AQI 215

Query: 182 N--FGFKT 187
           N  FG  +
Sbjct: 216 NCLFGLSS 223


>gi|256819216|ref|YP_003140495.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM
           7271]
 gi|256580799|gb|ACU91934.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM
           7271]
          Length = 1485

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 19/136 (13%)

Query: 10  IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPE 58
           ++FD ETTGL         DS N  R ++I A +L D        Q FL  P+G     +
Sbjct: 3   LIFDTETTGLPRRWDAPLTDSDNWPRAVQI-AWQLHDEWGALIEHQDFLIKPDGFDVPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEW-IAHNAKFDVGFINAELQRIN- 114
           A K+HGI+ +  + +       +E +  FNE    A++ +  N  FD+  + AE  R   
Sbjct: 62  AEKVHGISTQLAEAQ---GLPIAEVFKAFNEALSKAQYVVGQNIGFDINIMGAEFYRYGV 118

Query: 115 KDPLDPSRIIDTLSIA 130
           + PL    +IDT + A
Sbjct: 119 ESPLTQMPVIDTCTEA 134


>gi|293374981|ref|ZP_06621276.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909]
 gi|325843349|ref|ZP_08167932.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1]
 gi|292646391|gb|EFF64406.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909]
 gi|325489378|gb|EGC91751.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1]
          Length = 306

 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 13/148 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ---VFLCPNGRKNSPEALKLH 63
           M  I  D ET   + K D    IG    L   K N+  +     + PN  + +P  + +H
Sbjct: 1   MNFIAIDFETA--NEKRDSACSIG----LTVVKNNQIIEQKYYLIKPNELRFAPINISIH 54

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI    +K+  +F  ++ E   +F   N   +AHNA FD+  +   L   +  P    R 
Sbjct: 55  GIRASDVKNAKTFDQLWPELLPYFT--NNIIMAHNAAFDLSVLRHTLDAYH-IPYPNCRY 111

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGI 150
             T+ ++R   P   N  LN++    G+
Sbjct: 112 GCTMILSRNFFPHLENAKLNTVNHHLGL 139


>gi|159903267|ref|YP_001550611.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9211]
 gi|159888443|gb|ABX08657.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9211]
          Length = 245

 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 10/163 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGLDS  D+ +EIGA+     +++      FL P   +NS E+  ++ I  E 
Sbjct: 24  LILDTETTGLDSDKDQCLEIGAILFHVKTRSVLAQNSFLLPVD-ENSAES--INRIPAEI 80

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRIIDTLS 128
            +    +      F +  +   A  +AHN  FD   F +  L ++ K P   S  ++ +S
Sbjct: 81  TRIFQPWEMGMKYFEELVDCAEAV-VAHNVAFDKQWFGSPPLPKLIK-PWICS--MEDIS 136

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                   SR  +  L   Y I +   S H AL D   L++V+
Sbjct: 137 WPSHLQLRSRPSVRDLALAYEIPV--WSAHRALTDCIYLAEVF 177


>gi|158317483|ref|YP_001509991.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec]
 gi|158112888|gb|ABW15085.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec]
          Length = 237

 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 14/163 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDEF 69
           V D ETTG D + DR +++  +++      N+  Q+    +   + PE A ++HGIT E 
Sbjct: 10  VLDFETTGTDVETDRAVQVALLKVGPTGVLNQLCQII---DPGVDVPEAAARIHGITTER 66

Query: 70  L----KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
                +D         +  +         +  N+ FD+  ++ EL+R +   L  +   +
Sbjct: 67  ARREGRDPAEVLGRVGQALEGVWRDGIPVVIMNSSFDLTLLDRELRRHHGRSLAEADMLV 126

Query: 124 IDTLSIARRKHP--SSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +D + I R   P    +  L +L   Y   +     H AL D 
Sbjct: 127 LDPMVIDRELDPRRPGKRTLTALATHY--RVRQEGAHDALADC 167


>gi|114562985|ref|YP_750498.1| DNA polymerase III subunit epsilon [Shewanella frigidimarina NCIMB
           400]
 gi|114334278|gb|ABI71660.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
           frigidimarina NCIMB 400]
          Length = 238

 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 16/73 (21%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK---NSPEALK----- 61
           +  D ETTGLDS+ + II IG V          T Q   C   +K   N  + L+     
Sbjct: 49  VALDFETTGLDSQKNSIISIGLVPF--------TLQRIFCRKAKKWYLNPKDKLQEDSII 100

Query: 62  LHGITDEFLKDKP 74
           +HGIT   L+D P
Sbjct: 101 IHGITHSDLQDAP 113


>gi|213963506|ref|ZP_03391759.1| putative DNA polymerase III, alpha subunit subfamily
           [Capnocytophaga sputigena Capno]
 gi|213953786|gb|EEB65115.1| putative DNA polymerase III, alpha subunit subfamily
           [Capnocytophaga sputigena Capno]
          Length = 1485

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 19/134 (14%)

Query: 10  IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPE 58
           ++FD ETTGL         DS N  R ++I A +L D        Q FL  P+G     +
Sbjct: 3   LIFDTETTGLPRRWDAPLTDSDNWPRAVQI-AWQLHDEWGALIEHQDFLIKPDGFDVPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEW-IAHNAKFDVGFINAELQRIN- 114
           A K+HGI+ +  + +       +E +  FNE    A++ +  N  FD+  + AE  R   
Sbjct: 62  AEKVHGISTQLAETQ---GVPIAEVFKAFNEALSKAKYVVGQNIGFDINIMGAEFHRYGV 118

Query: 115 KDPLDPSRIIDTLS 128
           + PL    +IDT +
Sbjct: 119 ESPLTQMPVIDTCT 132


>gi|258647163|ref|ZP_05734632.1| exonuclease [Prevotella tannerae ATCC 51259]
 gi|260853133|gb|EEX73002.1| exonuclease [Prevotella tannerae ATCC 51259]
          Length = 163

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HG+     ++ P FS +++E       +    +AHN +FD G + A  Q    D  D 
Sbjct: 53  RIHGLRQSDTENAPVFSKVWTEIAPLI--EGLPLVAHNCRFDQGCLKAVFQVYQMDYPDY 110

Query: 121 SRIIDTLSIARRKHPSSRN 139
           +  +DTL+ AR   P   N
Sbjct: 111 T-FLDTLTAARHALPHLDN 128


>gi|58337027|ref|YP_193612.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227903590|ref|ZP_04021395.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
 gi|58254344|gb|AAV42581.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227868477|gb|EEJ75898.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
          Length = 177

 Score = 38.5 bits (88), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++H IT E +K+ P+ + ++ +    + +      AHN++FD   +   L R N +  +
Sbjct: 50  IQVHQITAEDVKNAPTMAEVWPKIKGLY-QPGMLVAAHNSRFDTNVMRQSLARYNIE--E 106

Query: 120 PSR-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P   +IDTL+ ++   P   N  L+++     + + H   H AL DS   + + I
Sbjct: 107 PHYLVIDTLATSKLFEPELPNHKLDTVSDALNVELWHH--HNALSDSEACAGILI 159


>gi|300858286|ref|YP_003783269.1| hypothetical protein cpfrc_00868 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685740|gb|ADK28662.1| hypothetical protein cpfrc_00868 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206006|gb|ADL10348.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis C231]
 gi|302330559|gb|ADL20753.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276241|gb|ADO26140.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis I19]
          Length = 232

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 25/175 (14%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + ++ + FD+ETT  +    RI+    V +       R     L   G +   EA K+HG
Sbjct: 12  DPLKVLSFDLETTSANPHEARIVSSALVRIDSNGAHPREL---LADPGIEIPEEAAKVHG 68

Query: 65  ITDEFLKD---------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           IT E+ ++         K + ++I   + D F       I +NA +D+      L+++  
Sbjct: 69  ITTEYAREHGRPHEEVLKETIAAIQQAWADGFT-----LIVYNAAYDLTV----LRKLTG 119

Query: 116 DPLDPSRIIDTLSI--ARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHL 166
           D +    + D   I  A  K    +  L  LC+ Y + +  +H +   AL  + +
Sbjct: 120 DFVVTGPVFDPYVIDKALDKFRRGKRTLTDLCQHYNVRLDNAHEATSDALAAARI 174


>gi|170724006|ref|YP_001751694.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           W619]
 gi|169762009|gb|ACA75325.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           W619]
          Length = 236

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 77/173 (44%), Gaps = 18/173 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
           R +V D+ET+GL+   D+++ IGAV +    +D+S+   RT      P  + N+  ++ +
Sbjct: 40  RWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFSQQFERTLH---RPAQKTNA--SVLI 94

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+    L      +    E  +F  +     +A +A FD   +   L+      L    
Sbjct: 95  HGLGPSALAAGSDPAEALLELLEFIGDSPV--LAFHAPFDQRMLARALKETLGHRLQ-LP 151

Query: 123 IIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +D   +A   +P +      L+    R+G+ +  R  H A  D+ + +++ +
Sbjct: 152 FLDVAELAPMLNPDTVLREAGLDDWVARFGLQVDER--HHASADAQVTAELAL 202


>gi|90408436|ref|ZP_01216597.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3]
 gi|90310470|gb|EAS38594.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3]
          Length = 237

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 10/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGL +K + II IG VE+ +      + +     N +K + E   ++ I  + 
Sbjct: 51  LVVDFETTGLIAKYNDIISIGWVEISNLQVVCASQEHIYINNDKKINHETAVINHIVPQM 110

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   S     +        +    + H    +  F++  + +    P  P   IDTL I
Sbjct: 111 LRQGVSLHDAINAL--LIKAKGKILVVHGKVIEQCFLDFYMHQYFALPKIPLLWIDTLLI 168

Query: 130 ARRKHP------SSRNDLNSLCKRYGITISHRSKHGALLDS 164
            + +        +  N L S   RY   +   + H AL+DS
Sbjct: 169 EKWRAVQKGMTLAQDNRLGSARIRYN--LPQYTAHNALIDS 207


>gi|282880255|ref|ZP_06288971.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
 gi|281305850|gb|EFA97894.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
          Length = 905

 Score = 38.5 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 20/167 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGL+   D I++I AV +          F VF+  N  +  P  L   G  D 
Sbjct: 523 VVFDTETTGLNVFEDDIVQIAAVRMRQGCVVPGSEFVVFMRTN--REIPRKL---GNIDN 577

Query: 69  FLKDKPSFSSIF--SEFWDFFNEQ--NAEWIAHNAKFDVGFINAELQRINKDPLDPSRI- 123
            L ++     ++  SE    F E   N+  + HNA +D   +N  LQR   D     R  
Sbjct: 578 PLIEEIQHHQLYSPSEGLKMFLEYVGNSRLLGHNADYDYHILNFNLQRYLPDIQLEERCN 637

Query: 124 --IDTLSIARRKHPSSRNDLNSLCKRYGITISH---RSKHGALLDSH 165
              D+L + R   P    +L     +Y +++ H   ++ H A  D H
Sbjct: 638 MYFDSLKLIRLLEP----NLKEYKLKYLLSVLHLEGQNSHLADADVH 680


>gi|297802094|ref|XP_002868931.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297314767|gb|EFH45190.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 227

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSR 122
           GIT   + + PSF  +  + +   N +   W  HN + FD   I      I K   +PS 
Sbjct: 69  GITRAKVTNAPSFEDVAEKIYGLLNGRI--WAGHNIRRFDCIRIKEAFAEIGKAAPEPSG 126

Query: 123 IIDTLSIARRKHPSSRNDLN--SLCKRYGITIS-HRS 156
           IID+L +   K      ++   SL   +G+ +  HRS
Sbjct: 127 IIDSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRS 163


>gi|15240840|ref|NP_196388.1| exonuclease family protein [Arabidopsis thaliana]
 gi|9759593|dbj|BAB11450.1| exonuclease-like protein [Arabidopsis thaliana]
 gi|332003813|gb|AED91196.1| exonuclease family protein [Arabidopsis thaliana]
          Length = 468

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 11/153 (7%)

Query: 12  FDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNGRK-NSPEALKLHGITD 67
           FD+ETT +  +  R  I+E G++ +     T  R++   + P      S  +++ +GI  
Sbjct: 12  FDVETT-VPKRGQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLSVRCNGIKR 70

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126
           + +   P F+ I    +D  + +   W  HN  +FD   I      I + P +P   ID+
Sbjct: 71  DDVVLAPLFADIADTVYDILHGRI--WAGHNILRFDCARIREAFAEIGRQPPEPKGAIDS 128

Query: 127 LSIARRKHPSSRNDLN--SLCKRYGI-TISHRS 156
           L +  +K      D+   +L + +G+   +HRS
Sbjct: 129 LGLLTQKFGRRAGDMKMATLARYFGLGNQTHRS 161


>gi|149377478|ref|ZP_01895220.1| exonuclease [Marinobacter algicola DG893]
 gi|149358245|gb|EDM46725.1| exonuclease [Marinobacter algicola DG893]
          Length = 236

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 16/180 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPE 58
           R +  R IV D+ETTGL+   D +I IGAV +    +D S     F + L      +  E
Sbjct: 35  RLSDCRLIVLDLETTGLNPAKDNVIAIGAVAIRHNAIDLSD---QFDLIL-RRPELDISE 90

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + +HGI  E L              ++ N      +A+++ FD  F+   L++      
Sbjct: 91  TVLIHGIGPEALTQGHETEDALLHLLEWMNGDPI--LAYHSAFDQKFLEKALKQ-TLGYT 147

Query: 119 DPSRIIDTLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P   +D   +    +P+S+     L++    + + +S  ++H A  D+ + +++ + ++
Sbjct: 148 QPHTWLDVAEMLPAYYPNSKTGGKGLDNWADFFDLEVS--ARHHAAADAMVTAELTLAVI 205


>gi|154504776|ref|ZP_02041514.1| hypothetical protein RUMGNA_02285 [Ruminococcus gnavus ATCC 29149]
 gi|153794950|gb|EDN77370.1| hypothetical protein RUMGNA_02285 [Ruminococcus gnavus ATCC 29149]
          Length = 300

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 4/101 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + IV+D+ETTG++   D  + +  ++L    +    F+ +  P   K+ P+A  +HGIT 
Sbjct: 133 KGIVYDLETTGVNPWKDEPLSMCIMDL----QGKVIFEHYFRPEHTKSWPDAAAIHGITP 188

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           E + ++   S    +    F+  +     +   FD  F+ A
Sbjct: 189 EKVANESPMSFYRDQIQKIFDASDILITYNGINFDDSFLEA 229


>gi|302877146|ref|YP_003845779.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|307687841|ref|ZP_07630287.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|302580003|gb|ADL54015.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
          Length = 205

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I FD ETTGL  K  +I ++  +++   +K  +        +     P A  +HG +
Sbjct: 1   MNMIFFDTETTGL--KPGQICQLSYIKVTTDTKPQKVEGKNFFFSVEDIEPSAEAIHGFS 58

Query: 67  DE---FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            E    L D   FS ++ EF + F + +   I +N  FD+ F+ AE  R+ 
Sbjct: 59  VEDLIELSDGCEFSDLYEEFINDFVDCDL-VIGYNVNFDIKFLVAEFYRLG 108


>gi|317052331|ref|YP_004113447.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
 gi|316947415|gb|ADU66891.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
          Length = 166

 Score = 38.5 bits (88), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 12/118 (10%)

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDP 117
            +HG+T   +   P    +F E W             +AHN  FD+  +   L+      
Sbjct: 53  AVHGLTAADVAGAP----VFGELWPEIAADIVSAPLLVAHNTSFDMSVLQHCLRSSGIAA 108

Query: 118 LDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P  +  +  +A++  P   N  LN+LCK +GI ++H   H AL D+   + + +++
Sbjct: 109 NIPDAVC-SCRMAKKLLPQLVNHKLNTLCKHFGIPLNH---HDALSDAQAAARIILEL 162


>gi|126342238|ref|XP_001368108.1| PREDICTED: similar to 3-5 exonuclease TREX2 [Monodelphis domestica]
          Length = 241

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 22/143 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS------KTNRTFQ---------VFLCPNGRK 54
           +  D+E TGL + +  I EI    +  +S        + T Q         + +CP  + 
Sbjct: 11  VFLDLEATGLPNAHPEIAEISLFAIHRFSLEHPERDESGTLQLPRVLDKLTLCMCPE-QN 69

Query: 55  NSPEALKLHGITDEFLKD--KPSF-SSIFSEFWDFFNEQNAE--WIAHNA-KFDVGFINA 108
            +P+A ++ G++++ L D  K  F  ++     +F   Q +    +AHN   +D   +  
Sbjct: 70  FTPKASEITGLSNQNLADNHKAGFNGAVIRALREFLKRQKSPICLVAHNGFDYDFPLLRT 129

Query: 109 ELQRINKDPLDPSRIIDTLSIAR 131
           ELQR+  D    +  +DTL   R
Sbjct: 130 ELQRLGADLPGGTVCLDTLPALR 152


>gi|220926351|ref|YP_002501653.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
 gi|219950958|gb|ACL61350.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
          Length = 296

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 10/98 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHG 64
           ++ D ETTGLD   D +IE+G +    Y  + R  +V      L    R    E  +L G
Sbjct: 42  LILDTETTGLDPAADEVIELGIIAFT-YGPSGRIHRVRHRFNQLQQPARPIPEEVTRLTG 100

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           ITD  +  +     I     +    +    IAHNA+FD
Sbjct: 101 ITDADVAGR----RIDDRAVEALAARARVVIAHNARFD 134


>gi|167031397|ref|YP_001666628.1| DNA polymerase IIIsubunit epsilon [Pseudomonas putida GB-1]
 gi|166857885|gb|ABY96292.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1]
          Length = 236

 Score = 38.5 bits (88), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 18/175 (10%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKT-NRTFQVFLCPNGRKNSPEAL 60
           + R +V D+ET+GL+   D+++ IGAV +    +D+++   RT      P  + N+  ++
Sbjct: 38  EQRWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHR---PLQKTNA--SV 92

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HG+    L      +    +  DF  +     +A +A FD   +   L+      L  
Sbjct: 93  LIHGLGPSALAAGCDPAEALLDLLDFMGDSPV--LAFHAPFDQRMLARALKESLGHRLQ- 149

Query: 121 SRIIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           S  +D   +A   +P +      L+    R+G+ +  R  H A  D+ + +++ +
Sbjct: 150 SVFLDVAELAPMLNPDTVLREAGLDDWVARFGLQVEER--HHASADAQVTAELAL 202


>gi|187777769|ref|ZP_02994242.1| hypothetical protein CLOSPO_01361 [Clostridium sporogenes ATCC
           15579]
 gi|187774697|gb|EDU38499.1| hypothetical protein CLOSPO_01361 [Clostridium sporogenes ATCC
           15579]
          Length = 286

 Score = 38.5 bits (88), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 19/163 (11%)

Query: 24  DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSE 82
           D IIEIGA++L D  +   +F+V++ P   K  +P  ++L GI +E LK    F      
Sbjct: 34  DEIIEIGAMKLNDELECVDSFRVYIKPTIYKELNPRIIELTGINNEDLKYGFDFKKALKH 93

Query: 83  FWDFFNEQNAEWIAHN------AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK--- 133
           F         EWI  +         D+  +   ++  N +    S ++  + I +     
Sbjct: 94  F--------KEWIGKDYILCSWCDSDIKVLKKNIEYYNPNYKVESFLVPYIDIQKYCCEI 145

Query: 134 -HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                R  L+ +     I  S  + H AL DS L  DV+ KM 
Sbjct: 146 LEYGRRVSLHDIISTENIVPSTDTFHQALDDSKLTVDVFRKMF 188


>gi|149371985|ref|ZP_01891304.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49]
 gi|149355125|gb|EDM43686.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49]
          Length = 1476

 Score = 38.5 bits (88), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 15/134 (11%)

Query: 10  IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPE 58
           ++FD ETTGL         DS N  R I+I A +L D        Q +L  P G     +
Sbjct: 3   LIFDTETTGLPRNWNAPLSDSDNWPRCIQI-AWQLHDEMGNVIEHQDYLVQPEGFNIPFD 61

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KD 116
           A K+HGI+ E    K  S   + ++F +   +     +  N  FD+  + AE  R+  ++
Sbjct: 62  AEKIHGISTELAAAKGISLEDMMAKFQEVLGKTKF-LVGQNVGFDLNIMGAEFLRLGLEN 120

Query: 117 PLDPSRIIDTLSIA 130
           PL    ++DT + A
Sbjct: 121 PLPDMPLLDTCTEA 134


>gi|228471624|ref|ZP_04056398.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC
           33624]
 gi|228277043|gb|EEK15729.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC
           33624]
          Length = 1484

 Score = 38.5 bits (88), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 15/132 (11%)

Query: 10  IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPE 58
           ++FD ETTGL         DS+N  R ++I A +L D        + FL  P+G     +
Sbjct: 3   LIFDTETTGLPRNYNAPISDSENWPRAVQI-AWQLHDEKGALLEHKDFLIIPDGYTIPYD 61

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KD 116
           A ++HGI+ E   ++  S   +F EF    + +    +  N  FD+  + AE  R     
Sbjct: 62  AERIHGISTELATEQGVSIHKVFEEFEKALS-KTQYIVGQNIGFDIHIMGAEFYRYGVST 120

Query: 117 PLDPSRIIDTLS 128
            LD   I+DT S
Sbjct: 121 VLDKLPILDTCS 132


>gi|260060780|ref|YP_003193860.1| DNA polymerase III subunit alpha [Robiginitalea biformata HTCC2501]
 gi|88784910|gb|EAR16079.1| DNA polymerase III, alpha subunit [Robiginitalea biformata
           HTCC2501]
          Length = 1453

 Score = 38.5 bits (88), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 15/132 (11%)

Query: 10  IVFDIETTGLDSKND----------RIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPE 58
           ++FD ETTGL  + D          R I+I A +L D   +    +   + P+G     +
Sbjct: 3   LIFDTETTGLPKRWDAPASDTDNWPRCIQI-AWQLHDGEGRLVEQYDALVRPDGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKD 116
           A ++HGI+ +  +++      +   F    +      +  N  FD+  + AE  R+ ++D
Sbjct: 62  AEQIHGISTDLAREEGLPLEEVLEAFRGALSRTQF-LVGQNVGFDINVMGAEFYRVADED 120

Query: 117 PLDPSRIIDTLS 128
           PL+   ++DT +
Sbjct: 121 PLEKFPVLDTCT 132


>gi|257454169|ref|ZP_05619440.1| exonuclease, Ycg4D [Enhydrobacter aerosaccus SK60]
 gi|257448430|gb|EEV23402.1| exonuclease, Ycg4D [Enhydrobacter aerosaccus SK60]
          Length = 217

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 10/97 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLHGIT 66
           +++ FD ET G   + D+IIEI       +  ++R   +  L    R +SP A K+HGI 
Sbjct: 48  KRLFFDTETIG-GGREDQIIEIA------FCDSDRHVIIDTLIYTDRTSSPGAFKVHGIY 100

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
              L  KP+F  I          +     A+NA FD+
Sbjct: 101 PHELIGKPTFIDIQPAIVQLLKGRT--LYAYNANFDI 135


>gi|90407122|ref|ZP_01215310.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3]
 gi|90311698|gb|EAS39795.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3]
          Length = 238

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP--NGRKNSPEALKLHGIT 66
           +  D ETTGLDSK + II IG V   L      +  + ++ P  N ++NS   + +HGIT
Sbjct: 49  VALDFETTGLDSKQNSIISIGLVPFDLQRIYCRKAKKWYINPEDNLKENS---IIIHGIT 105

Query: 67  DEFLKDKPSFSSIF 80
              L+  P   SI 
Sbjct: 106 HSDLQGAPDLLSIL 119


>gi|88802793|ref|ZP_01118320.1| DNA polymerase III subunit [Polaribacter irgensii 23-P]
 gi|88781651|gb|EAR12829.1| DNA polymerase III subunit [Polaribacter irgensii 23-P]
          Length = 361

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 15/162 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTG     + I EI   +   +S  ++ F   + P  ++     ++L GI ++ L
Sbjct: 4   ILDIETTGGKFNEEGITEIAIYKFDGHSVVDQ-FISLVNPE-KEIQQFVVRLTGINNKML 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPSRIIDT 126
           +  P F  I     +    ++   +AHN  FD   ++ E  R+    N++ L    +   
Sbjct: 62  RSAPKFYEIAKRIIEI--TKDCTLVAHNTTFDYRILSTEFDRLGYDFNRNTLCTVELSKQ 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166
           L + +   PS    L  L K  GI ++  HR+   AL    L
Sbjct: 120 LILDQ---PSY--SLGKLTKALGIPMTDRHRASGDALATVQL 156


>gi|319901725|ref|YP_004161453.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
           P 36-108]
 gi|319416756|gb|ADV43867.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
           P 36-108]
          Length = 256

 Score = 38.1 bits (87), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 6/114 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTG +  +DRI+EI  +++  Y   N   +            EA  +HGI DE 
Sbjct: 10  VFFDLETTGTNINSDRIVEICYLKV--YPNGNEEAKTMRINPEMHIPAEASAVHGIYDED 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122
           +   P+F  +     +  + + ++    N+ +FD+  +  E  R   D +D SR
Sbjct: 68  VAKCPTFKEVARNIAN--DIEGSDLAGFNSNRFDIPVLAEEFLRAGVD-IDMSR 118


>gi|212551002|ref|YP_002309319.1| DNA polymerase III epsilon subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549240|dbj|BAG83908.1| DNA polymerase III epsilon subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 258

 Score = 38.1 bits (87), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 15/143 (10%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCPNGRKNS 56
           ++ N  R IVF D+ETTG +  +DRI+EI  ++++       KT R       P      
Sbjct: 1   MKLNLKRPIVFFDLETTGTNIISDRIVEISYLKVMPNDEKEIKTRRINPEIPIPK----- 55

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
            EA  +HGIT+E +K+   F +I          +  +   +N+ +FD+  +  E  R   
Sbjct: 56  -EASDIHGITNEDVKNALPFKAIAKLLAS--QIEGCDLAGYNSNRFDIPILAEEFLRAGI 112

Query: 116 D-PLDPSRIIDTLSIARRKHPSS 137
           D      + +D  +I  +K P +
Sbjct: 113 DVDWTKQKFVDVQTIFHKKEPRT 135


>gi|168207510|ref|ZP_02633515.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170661145|gb|EDT13828.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens E str. JGS1987]
          Length = 204

 Score = 38.1 bits (87), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 7/124 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ + FD ETTG+  K   I ++  + +   +K  +T    +     +  PEA ++HG +
Sbjct: 1   MKLLFFDTETTGV--KPGSICQLSYILVDTSTKPQKTIGKNIFFTVDEMEPEAERIHGFS 58

Query: 67  DE---FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            E    L +   F  +++ F + F E +   I HN +FD+ F+  EL  +  +  +P+ +
Sbjct: 59  LEKLYELSEGMYFEDLYANFINDFLEADF-IIGHNVQFDIKFLKHELLGLG-EFFEPNNV 116

Query: 124 IDTL 127
             T+
Sbjct: 117 FCTM 120


>gi|188585233|ref|YP_001916778.1| Exonuclease RNase T and DNA polymerase III [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349920|gb|ACB84190.1| Exonuclease RNase T and DNA polymerase III [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 170

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P  + +HGI  E ++D+P FS I+ E   +   +N   +AHNA FD+  +   L   + D
Sbjct: 23  PYNVYIHGIKPEDVRDEPDFSEIWREISTYL--ENNLVVAHNASFDISVLRHVLDLYDLD 80

Query: 117 PLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                  + T  +A ++ P   +  L S+ K   +   H   H A+ D++  + + +
Sbjct: 81  -YPQFDYLCTKKLAEKQWPHLDKYGLKSIAKFLDVKFKH---HDAMEDAYACAQIAV 133


>gi|58616403|ref|YP_195533.1| DNA polymerase III subunit epsilon [Azoarcus sp. EbN1]
 gi|56315865|emb|CAI10509.1| putative exonuclease [Aromatoleum aromaticum EbN1]
          Length = 342

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 41/187 (21%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTN-------RTFQVFLCPNGRKNSPEALKLHGI 65
           D+ETTGL   +D+II+IG V L ++ + +         +  F  P GR    E  +L GI
Sbjct: 47  DVETTGLKKDSDKIIDIGLV-LAEFDRVSGQVLRVLERYSGFEDP-GRPIPEEITRLTGI 104

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEW--------IAHNAKFDVGFINAELQRINKDP 117
            DE + ++             F++   E         +AHNA FD GF+        K  
Sbjct: 105 RDEDVLEQ------------TFDDARVEALIARADLVVAHNAPFDRGFLELRFPSFQK-- 150

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSL---CKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                     + ++R+ P S+    S       + I       H AL+D+ +   +  +M
Sbjct: 151 -------KWWACSQREAPWSQMMTGSTKLEWLAFQIGGCFYEAHRALVDAEVTLFILAQM 203

Query: 175 MVGGSQI 181
             GG  I
Sbjct: 204 GPGGRPI 210


>gi|295840123|ref|ZP_06827056.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
 gi|197696983|gb|EDY43916.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
          Length = 243

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 14/160 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +K R   FDIE+TG+D +  RI+     ++   +      + +L     +   EA  +HG
Sbjct: 4   HKQRYCAFDIESTGVDVETARIVTACVAQVRGGALPE--TRSWLADPSIEIPDEATAVHG 61

Query: 65  I-TDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPL-- 118
           I TD    +      +  E     +      A  +A NA++D+  ++ E +R  +  L  
Sbjct: 62  ITTDRARAEGRPAGEVVEEITTLLHSCLLAGAPVVAMNARYDLTLLDRECRRHERPTLAD 121

Query: 119 ----DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
               D   ++D L + R+  ++   +  L +L + Y + +
Sbjct: 122 RLGGDVRPVLDPLVLDRQVDRYRRGKRTLTALAEHYRVPL 161


>gi|307942306|ref|ZP_07657657.1| putative exonuclease RNase T and DNA polymerase III [Roseibium sp.
           TrichSKD4]
 gi|307774592|gb|EFO33802.1| putative exonuclease RNase T and DNA polymerase III [Roseibium sp.
           TrichSKD4]
          Length = 195

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 11/121 (9%)

Query: 7   MRKIVFDIETTGL-------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MR+   D+ TTGL       D    R+++   V        +   Q ++    ++ S  A
Sbjct: 1   MRQTPMDLATTGLPRGRNINDPDYPRMVQFSGVLFTTDGTVHGRAQDYIQQEDKRTSKSA 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN--AKFDVGFINAELQRINKDP 117
             +HGITD   +         +  W F N   A  I       FD+  I A L R+NKDP
Sbjct: 61  ENVHGITDTKSRTL-GIPEAIAVAW-FTNRLKASEIVTGWALPFDLDIIRAALIRMNKDP 118

Query: 118 L 118
           L
Sbjct: 119 L 119


>gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301]
          Length = 958

 Score = 38.1 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 38/139 (27%)

Query: 12  FDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG D  NDRI+ +  AVE          F+ +  P                  FL
Sbjct: 391 FDTETTGFDIFNDRIVGLSLAVE---------PFKAWYVP------------------FL 423

Query: 71  -KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            KD P ++ I       F ++    I  N KFD+  +      I        R+ DT+ +
Sbjct: 424 EKDTPEYAEIVRP---LFEDEKIAKIGQNIKFDLMVLRRLGITIR------GRMYDTMIL 474

Query: 130 ARRKHPSSRNDLNSLCKRY 148
                P SR+++N+L ++Y
Sbjct: 475 HYLLDPESRHNMNALAEKY 493


>gi|225175900|ref|ZP_03729892.1| Exonuclease RNase T and DNA polymerase III [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168488|gb|EEG77290.1| Exonuclease RNase T and DNA polymerase III [Dethiobacter
           alkaliphilus AHT 1]
          Length = 198

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 13/101 (12%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY----SKTNRTFQVFLCPN--GRKNSPEALKLHGIT 66
           D+ETTGL  + + I+E+ A+ L  Y     +  R    ++     G   SP A ++HG+ 
Sbjct: 16  DVETTGLSPRKEEIVEL-AICLFAYRRDSGEITRIVDRYVGQREPGVPVSPGAARVHGLR 74

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFI 106
              L+ K   ++            +AE+I AHNA FD GF+
Sbjct: 75  MADLRGKQLDTARIEAIL-----HSAEFIVAHNASFDRGFV 110


>gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
 gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 879

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 55/138 (39%), Gaps = 28/138 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD ETTGLD+K  +I+             N  F V L  N      E + L       
Sbjct: 319 IAFDTETTGLDTKEAKIVGFSFC-----MNENEAFYVPLTHN-YLGVGEQISLQSA---- 368

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
              K +  +IF+ F           I HN K+D   I       N D   P +  DT+ +
Sbjct: 369 ---KKAIEAIFNHF----------VIGHNLKYDFKIIQN-----NFDLNLPQKYADTMIL 410

Query: 130 ARRKHPSSRNDLNSLCKR 147
           A  K+PS R +++ L  R
Sbjct: 411 AWLKNPSLRVNMDDLALR 428


>gi|74316107|ref|YP_313847.1| exonuclease [Thiobacillus denitrificans ATCC 25259]
 gi|74055602|gb|AAZ96042.1| Exonuclease [Thiobacillus denitrificans ATCC 25259]
          Length = 233

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/27 (55%), Positives = 21/27 (77%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVEL 34
          R +V D+ET+GLD + DR+I IGAV +
Sbjct: 41 RCVVVDVETSGLDPRRDRLIAIGAVAV 67


>gi|161833722|ref|YP_001597918.1| putative DNA polymerase III subunit alpha (dnaE)/DNA polymerase
           III, epsilon subunit (dnaQ) fusion [Candidatus Sulcia
           muelleri GWSS]
 gi|152206212|gb|ABS30522.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase
           III, epsilon subunit (dnaQ) fusion [Candidatus Sulcia
           muelleri GWSS]
          Length = 1411

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 12/117 (10%)

Query: 10  IVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVF------LCPNGRKNSP 57
           I+FD ETTGL    D       II +  +  L +   +   Q+       + P G +   
Sbjct: 3   IIFDTETTGLPLPKDFNPPIINIINLPRLVKLSWVLLDEKLQLIELKDYIIKPEGYEIPF 62

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            + K+HGI+ ++  +K    +   E ++   +++   I HN  FD+  + AE  RIN
Sbjct: 63  NSTKIHGISTKYAIEKGIKINFVLEEFNLIIKKSNFLIGHNVFFDIKIVCAEFIRIN 119


>gi|310830415|ref|YP_003965516.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2]
 gi|309249882|gb|ADO59448.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2]
          Length = 193

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 7  MRKIVFDIETTGLD---SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKL 62
          M  I+ D+E T  +   SK + IIEIGAV+L D+      FQ F+ P       E  ++L
Sbjct: 1  MNYIIVDLEATCWENDRSKRNEIIEIGAVKLDDHLNVVSEFQAFVKPKLYPQLSEFCMQL 60

Query: 63 HGITDEFLKDKPSFSSIFSEF 83
            I    +    +F ++  +F
Sbjct: 61 TSIEQHDVDHAATFETVLEDF 81


>gi|328776163|ref|XP_003249125.1| PREDICTED: hypothetical protein LOC100577651 [Apis mellifera]
          Length = 321

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 36/210 (17%)

Query: 10  IVFDIETTGLDSKN--DRIIEIGAVELLDYSKTN------RTFQVFLCP--NGRKNSPEA 59
           I FD+ETTGL +KN   ++ E+  + +   +  N      R  Q  + P       S E 
Sbjct: 6   IFFDLETTGLITKNCMPKVTELSLIAVSRTAVCNTKDFLPRVLQKLILPIHPNLNISKEI 65

Query: 60  LKLHGITDEFLKDKPSFSS-IFSEFWDFFNEQNAE--WIAHNA-KFDVGFINAELQRINK 115
             L G+++E L +   F+  +++   +F N Q A   ++A+N   FD   + +EL+ I+K
Sbjct: 66  ETLTGLSNENLCEIQHFNCDVYNLIINFINRQKAPTCFVAYNGNNFDYPILLSELKTIDK 125

Query: 116 DPLDPSRIIDTLSIAR----RKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              +    ID L + +    R+ P  +  N +N+ C    I +           S LL+D
Sbjct: 126 SFSENILSIDMLQLIKDFFLREEPIKKMNNQINNSC---NIEV-----------STLLND 171

Query: 170 VYIKMMVGG--SQINFGFKTNEDRFFKEEK 197
            Y K++     S IN       D F K EK
Sbjct: 172 GYDKILSDALDSIINTNDDNKNDTFLKIEK 201


>gi|307169180|gb|EFN61996.1| Prion protein-interacting protein [Camponotus floridanus]
          Length = 236

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 13/98 (13%)

Query: 10  IVFDIETTG---LDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGR-KNSPEALKLHG 64
           +V D E T    +  +   IIE+  V L     K   TF  ++ P    K +P  ++L G
Sbjct: 28  LVMDFEATCDKQVTLQPQEIIELPCVALSTSDWKLKDTFHAYIRPRVYPKLTPFCIELTG 87

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           I  E + D+P F+ +FS+F         +W+     FD
Sbjct: 88  IMQEMVDDQPCFADVFSKF--------RKWLIEGGYFD 117


>gi|257125974|ref|YP_003164088.1| exonuclease RNase T and DNA polymerase III [Leptotrichia buccalis
           C-1013-b]
 gi|257049913|gb|ACV39097.1| Exonuclease RNase T and DNA polymerase III [Leptotrichia buccalis
           C-1013-b]
          Length = 212

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 33/192 (17%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-----------RTFQVFLCPN-GRKNSP 57
           I FD+ET G   +   ++ + A+++ +Y+  N             F  F   N G + + 
Sbjct: 12  IFFDVETNGF--QGSSVLSMSAIKV-NYNSENTGEEKNKWKKVSEFNRFYFRNEGEELNE 68

Query: 58  EALKLHGITDE-FLKDKPS--------FSSIFSEFWD---FFNEQNAEWIAHNAKFDVGF 105
            A+ ++G+TD+  L ++ S        +   F E  D    F +  + ++AHN KFD  F
Sbjct: 69  GAVSVNGLTDDVILSERKSIIQNTGIEYPLTFKEDMDNFFLFCQDTSHFVAHNIKFDRSF 128

Query: 106 INAELQRINKDPLDPSRI--IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++  LQ      L    I  ++  S    K P     L      Y I       HG+  D
Sbjct: 129 VDFPLQNQFDTMLTNIDIVKVNGSSYGNYKWPK----LMECANYYNIPFEESQLHGSYYD 184

Query: 164 SHLLSDVYIKMM 175
             ++  ++ KMM
Sbjct: 185 VLIMFRIFFKMM 196


>gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 879

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 56/139 (40%), Gaps = 30/139 (21%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD ETTGLD+K  +I+             N  F V L  N      E + L       
Sbjct: 319 IAFDTETTGLDTKEAKIVGFSFC-----MNENEAFYVPLTHN-YLGVGEQISLQSA---- 368

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLS 128
              K +   IF+ F           I HN K+D   I       N   L+ P +  DT+ 
Sbjct: 369 ---KKAIEVIFNHF----------VIGHNLKYDFKIIQ------NNFGLNLPQKYADTMI 409

Query: 129 IARRKHPSSRNDLNSLCKR 147
           +A  K+PSSR +++ L  R
Sbjct: 410 LAWLKNPSSRVNMDDLALR 428


>gi|15221225|ref|NP_177579.1| exonuclease family protein [Arabidopsis thaliana]
 gi|12324816|gb|AAG52378.1|AC011765_30 putative exonuclease; 20146-18080 [Arabidopsis thaliana]
 gi|20466502|gb|AAM20568.1| putative exonuclease [Arabidopsis thaliana]
 gi|23198160|gb|AAN15607.1| putative exonuclease [Arabidopsis thaliana]
 gi|332197464|gb|AEE35585.1| polynucleotidyl transferase, ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 506

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 24/160 (15%)

Query: 12  FDIETTGLDSKNDR---IIEIGAV--------ELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           FD+ET  + +K+     I+E GA+        EL  YS   R   + L     K      
Sbjct: 16  FDLET-AVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLISTLTK------ 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD 119
           +  GIT + +    +FS I  + +D  + +   W  HN  +FD   I      I   P +
Sbjct: 69  RRSGITRDGVLSAHTFSEIADKVYDILHGRI--WAGHNIIRFDCVRIREAFAEIGLSPPE 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT-ISHRS 156
           P   ID+LS+  +K      D+   SL   +G+   +HRS
Sbjct: 127 PKATIDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRS 166


>gi|330965486|gb|EGH65746.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 237

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 4/107 (3%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP  L +HG
Sbjct: 40  QQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVL-IHG 98

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           +    +           +F +F  E  +  +  +A FD   +   L+
Sbjct: 99  LAPSAIAAGSEPVEALLDFMEFVGE--SPILGFHAPFDQHMLGRALK 143


>gi|258620167|ref|ZP_05715206.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus
           VM573]
 gi|262165546|ref|ZP_06033283.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
 gi|258587525|gb|EEW12235.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus
           VM573]
 gi|262025262|gb|EEY43930.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
          Length = 233

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 18/168 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            Q +L    +     ++ +HGIT   
Sbjct: 45  VALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQPTKPLEEGSVVIHGITHSE 104

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+       + SE +D    +    +AH    +  F+      +  + ++   IIDTL I
Sbjct: 105 LRHAQEPEVVLSELFDALRGKIV--VAHFRHIEREFLRQATLNLWDEAVE-FPIIDTLEI 161

Query: 130 ARRKHPSSRNDLNSLCK-------------RYGITISHRSKHGALLDS 164
                 + R+    L +             RYG+     S H AL D+
Sbjct: 162 EHYVQNAQRSLWQRLLRRPLNSVRLGQSRLRYGLPAY--SPHHALTDA 207


>gi|297806807|ref|XP_002871287.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317124|gb|EFH47546.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 468

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 11/153 (7%)

Query: 12  FDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNGRK-NSPEALKLHGITD 67
           FD+ETT + ++  R  I+E G++ +     T  R++   + P      S  +++ +GI  
Sbjct: 12  FDVETT-VPNRGQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLSVRCNGIKR 70

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126
           + +   P F+ I    +D  + +   W  HN  +FD   I      I + P +P   ID+
Sbjct: 71  DDVVLAPLFADIADTVYDILHGRI--WAGHNILRFDCARIREAFAEIGRQPPEPKGAIDS 128

Query: 127 LSIARRKHPSSRNDLN--SLCKRYGI-TISHRS 156
           L +  ++      D+   +L + +G+   +HRS
Sbjct: 129 LGLLTQQFGRRAGDMKMATLARYFGLGNQTHRS 161


>gi|224023848|ref|ZP_03642214.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM
           18228]
 gi|224017070|gb|EEF75082.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM
           18228]
          Length = 258

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTG +   DRI+EI  +++  Y   N   +      G      +  +HGI D  
Sbjct: 10  VFFDLETTGTNINTDRIVEICYLKV--YPNGNEESKTMRINPGMHIPEASSAIHGIYDAD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           + D P+F  +  +     + + A+    N+ +FDV  +  E  R   D
Sbjct: 68  VADCPTFKEVAKDIAR--DLEGADIAGFNSNRFDVPVLVEEFLRAGID 113


>gi|126668711|ref|ZP_01739661.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
 gi|126626811|gb|EAZ97458.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
          Length = 294

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 17/111 (15%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS----PEAL-KLHGI 65
           + D+ETTGL + ND+IIE+G V++     T +  ++    +  ++     P  + ++ GI
Sbjct: 51  ILDLETTGLSAANDKIIELGLVKVRVSPSTGQLTEIVSMLDQYEDPGIPIPAVITEITGI 110

Query: 66  TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           TD+ +     D+ + +   +         +   +AHN+ FD GF    L +
Sbjct: 111 TDDMVAGRRLDEGALAQALA--------GDGIILAHNSSFDRGFFEKRLPQ 153


>gi|149375575|ref|ZP_01893345.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter algicola
           DG893]
 gi|149360280|gb|EDM48734.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter algicola
           DG893]
          Length = 240

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 23/176 (13%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N +  +  D ETTGLD     I+ IG V   L   +   +    + P    +   ++ +H
Sbjct: 46  NDVPFVAVDFETTGLDPDKHSIVSIGVVPFTLGRVQLGGSRHWLVKPQLPLHQ-TSVTIH 104

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSR 122
           GIT   +   P    +  E       +    + H    +  F+N  L+ RI ++   P  
Sbjct: 105 GITHTDIDKAPDLDDVLDEILKSLAGRIP--VVHYRNIERPFLNMALKWRIGEEIRFP-- 160

Query: 123 IIDTLSIARRKHPSSRNDLNSLCK--------------RYGITISHRSKHGALLDS 164
           ++DT++I    HP+ +       K              RYG  + H   H AL+D+
Sbjct: 161 VMDTMAIEAYLHPNRKRSWWQKLKGQQPISIRLADSRLRYG--LPHYPPHNALVDA 214


>gi|222149472|ref|YP_002550429.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4]
 gi|221736455|gb|ACM37418.1| polymerase epsilon subunit [Agrobacterium vitis S4]
          Length = 326

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVF--LCPNGRKNSPEALKL 62
           ++ I+ D ETTGL+ + D IIEIG +     S  N     +V+  L         +   L
Sbjct: 71  LKGIILDTETTGLNWRKDEIIEIGLIAFTFDSNGNIGDVTEVYGGLQQPSMSIPADITTL 130

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            GITDE +  +    SI  E      E     IAHNA FD  F
Sbjct: 131 TGITDEVVAGQ----SIDMEVVQALIEPADLVIAHNAGFDRPF 169


>gi|296114717|ref|ZP_06833368.1| DNA polymerase III subunit epsilon [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978751|gb|EFG85478.1| DNA polymerase III subunit epsilon [Gluconacetobacter hansenii ATCC
           23769]
          Length = 298

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 11/115 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R I+ D+ETTGLD + D IIE+  V        +       F+    P  +  S E  KL
Sbjct: 40  RAILVDVETTGLDCEKDEIIELAMVPFFYTHFGEIVGIGAPFEGLRKP-AKPISSEVTKL 98

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            GI +  ++ K       + F        +  +AHNA FD  F+         +P
Sbjct: 99  TGIDNAMVEGKAINPDEVAAF-----AGTSLVVAHNAAFDRRFLERFCHAFAGNP 148


>gi|255324350|ref|ZP_05365469.1| DNA polymerase III subunit epsilon [Corynebacterium
           tuberculostearicum SK141]
 gi|255298569|gb|EET77867.1| DNA polymerase III subunit epsilon [Corynebacterium
           tuberculostearicum SK141]
          Length = 432

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 11/100 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN---GRKNSPEALKLHGIT 66
           +   ++TTG+     RI+ I A+   D  +  + F   L P+   G ++      LHG++
Sbjct: 56  VALTLQTTGIHPSTGRIVTIDAIAFNDAGEQGQLFHAVLKPDIDAGPRH------LHGLS 109

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
              ++  P+F  I        + +    I H+  +  GF+
Sbjct: 110 TTDIEQAPAFGKILKSLDKLIDGRT--LIVHDLPYTWGFL 147


>gi|172040411|ref|YP_001800125.1| DNA polymerase III subunit epsilon [Corynebacterium urealyticum DSM
           7109]
 gi|171851715|emb|CAQ04691.1| DNA polymerase III, epsilon subunit [Corynebacterium urealyticum
           DSM 7109]
          Length = 237

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 23/159 (14%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV----FLCPNGRKNSPEAL 60
           N    + FD+ETTG +  + RI+    V +       R  QV     L   G +   +A 
Sbjct: 21  NPAHMLSFDLETTGTNPLSARIVTSAMVRI-------RGSQVEDVELLADPGVEIPEQAS 73

Query: 61  KLHGITDEFLKD--KPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINK 115
            +HGIT E+ ++  KP    + +E         E+ A  +  NA +D+  + ++      
Sbjct: 74  AVHGITTEYAREHGKP-HDEVLAETIRAIRQGWEEGATLVVFNAPYDLTVLRSQDPSFTV 132

Query: 116 DPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
           D      +ID L + R   ++   +  L ++C+ Y + +
Sbjct: 133 D----GPVIDPLLLDRHFDQYRKGKRTLGAVCEHYEVAL 167


>gi|332977795|gb|EGK14553.1| DNA-directed DNA polymerase III epsilon subunit [Psychrobacter sp.
           1501(2011)]
          Length = 201

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 2/98 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E TGL+ K D ++ I A+ +   +  +      +C      + E + +HG+    
Sbjct: 34  VAIDCEMTGLNPKKDHLLSIAAIHINGSNIQSGQGLHLICRPPVMPTKETIVIHGLRPID 93

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           +++  S+  +      F +  N   + +  + D+GF+N
Sbjct: 94  VENGLSYEQMLERLLPFID--NRPIVGYCPQLDMGFLN 129


>gi|330874768|gb|EGH08917.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 237

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 8/115 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP  L +HG
Sbjct: 40  QQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVL-IHG 98

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +    +           +F +F  E  +  +  +A FD       L R  K+ LD
Sbjct: 99  LAPSAIAAGSEPVEALLDFMEFVGE--SPILGFHAPFD----QHMLARALKESLD 147


>gi|330829910|ref|YP_004392862.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565]
 gi|328805046|gb|AEB50245.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565]
          Length = 208

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 79/176 (44%), Gaps = 13/176 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           ++  D ETT LD +   I+ IGAV +  +   T     + + P       +++ +HG+  
Sbjct: 31  QVALDFETTSLDPEQAEIVSIGAVRIQGNRLLTGEALAIKVQPPASLTG-QSVVIHGLRH 89

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L+   +  +       F   +  E + ++  +D+  +N   Q++ +  L P R I+  
Sbjct: 90  QDLQQGMTLEAALRLLLHFIGPR--ELVGYHVAYDLRILNLACQKLWELTL-PQRGIEVS 146

Query: 128 SIAR----RKHPSSRNDLN--SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +      R++P +  DL+  ++C    + +     H AL D+   + +Y+++  G
Sbjct: 147 QLYHDHLYRRYPDAAIDLHLSAICSH--LELPSLPAHDALADATTAALIYLRLTCG 200


>gi|90412153|ref|ZP_01220159.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
 gi|90326877|gb|EAS43262.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
          Length = 238

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 25/172 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+ K D II IG V   L+    NR     + P  + N  +++ +H IT  
Sbjct: 49  VAMDFETTGLNVKKDGIITIGLVPFTLNRVYINRAQHWIVRPRQKLNE-QSVVIHNITHN 107

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTL 127
            + D P  S +          +    + H  + +  F++  L+ RI +    P  +IDTL
Sbjct: 108 DILDAPDLSEVIEPVLAALAGRVV--VVHYRRIEREFLDRALKDRIKEGIEFP--VIDTL 163

Query: 128 SIA---------------RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            +                + K P S   L    KRYG+     + H AL D+
Sbjct: 164 DLEAHIQQRLNGGFWNKLKGKKPQSVR-LAQARKRYGLPAY--TPHHALTDA 212


>gi|229916087|ref|YP_002884733.1| exonuclease RNase T and DNA polymerase III [Exiguobacterium sp.
           AT1b]
 gi|229467516|gb|ACQ69288.1| Exonuclease RNase T and DNA polymerase III [Exiguobacterium sp.
           AT1b]
          Length = 188

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ET   DS++  I  +G   +L       T Q  + P    +    +++HGI    
Sbjct: 6   LALDVETANRDSRS--ICSVGW-SILQNGDVVETDQRLVNPEEDFDMGN-IRVHGIRPSD 61

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   + S  +    E +   IAHNA FD+G +   + + +           T+ +
Sbjct: 62  VWDAPALPEVLSSLYPILREVDLV-IAHNASFDMGALRKAIVKYDLFDFPTIEYGCTVKL 120

Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +R+ +P   N  LN++ +   +   H   H A  D+ + + +   MM
Sbjct: 121 SRKLYPGLPNHKLNTMAEHLNVPFIH---HDAAEDARVCALLMRDMM 164


>gi|332197465|gb|AEE35586.1| polynucleotidyl transferase, ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 495

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 24/160 (15%)

Query: 12  FDIETTGLDSKNDR---IIEIGAV--------ELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           FD+ET  + +K+     I+E GA+        EL  YS   R   + L     K      
Sbjct: 16  FDLET-AVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLISTLTK------ 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD 119
           +  GIT + +    +FS I  + +D  + +   W  HN  +FD   I      I   P +
Sbjct: 69  RRSGITRDGVLSAHTFSEIADKVYDILHGRI--WAGHNIIRFDCVRIREAFAEIGLSPPE 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT-ISHRS 156
           P   ID+LS+  +K      D+   SL   +G+   +HRS
Sbjct: 127 PKATIDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRS 166


>gi|134044532|ref|YP_001101863.1| putative exonuclease [Yersinia ruckeri]
 gi|133904895|gb|ABO40912.1| putative exonuclease [Yersinia ruckeri]
          Length = 289

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 12/76 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---SPEALKLH 63
           +  +V D ETTGL  + D++IE+   ++           V LC   R      P+A+ +H
Sbjct: 104 LEPLVLDTETTGLGER-DQVIELAVTDIRGA--------VLLCTRLRPTVEIDPQAMGVH 154

Query: 64  GITDEFLKDKPSFSSI 79
           GI +  L ++P+++ +
Sbjct: 155 GINEAELSNEPTWNQV 170


>gi|237715177|ref|ZP_04545658.1| DNA Pol III epsilon chain [Bacteroides sp. D1]
 gi|262408870|ref|ZP_06085415.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647646|ref|ZP_06725213.1| exonuclease [Bacteroides ovatus SD CC 2a]
 gi|294810715|ref|ZP_06769363.1| exonuclease [Bacteroides xylanisolvens SD CC 1b]
 gi|298481744|ref|ZP_06999934.1| exonuclease [Bacteroides sp. D22]
 gi|229445010|gb|EEO50801.1| DNA Pol III epsilon chain [Bacteroides sp. D1]
 gi|262353081|gb|EEZ02176.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637012|gb|EFF55463.1| exonuclease [Bacteroides ovatus SD CC 2a]
 gi|294442048|gb|EFG10867.1| exonuclease [Bacteroides xylanisolvens SD CC 1b]
 gi|295087704|emb|CBK69227.1| DNA polymerase III, epsilon subunit and related 3'-5'
          exonucleases [Bacteroides xylanisolvens XB1A]
 gi|298271966|gb|EFI13537.1| exonuclease [Bacteroides sp. D22]
          Length = 259

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDE 68
          + FD+ETTG +   DRI+EI  +++  Y   N   +  L  N   + PEA   +HGI D 
Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKV--YPNGNEEAKT-LRINPEMHIPEASSAIHGIYDA 66

Query: 69 FLKDKPSFSSI 79
           + D P+F  +
Sbjct: 67 DVADCPTFKEV 77


>gi|19551498|ref|NP_599500.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum ATCC
           13032]
 gi|62389145|ref|YP_224547.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum ATCC
           13032]
 gi|21323011|dbj|BAB97640.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324478|emb|CAF18818.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease
           [Corynebacterium glutamicum ATCC 13032]
          Length = 360

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +   I+++G+     R++ I  V L    +   TF   L     K  P    LHG+T+E 
Sbjct: 28  VSVSIQSSGIHPSTSRMVTIDLVTLSPNLEPVETFHAVL---DSKTDPGPFHLHGVTEEE 84

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
                 F  I        + +    + HNA    GFI +E +R   D
Sbjct: 85  FASAKRFGQILKSLDRLIDGRT--LLIHNAARSWGFIVSEAKRAMND 129


>gi|237710744|ref|ZP_04541225.1| DNA Pol III epsilon chain [Bacteroides sp. 9_1_42FAA]
 gi|229455466|gb|EEO61187.1| DNA Pol III epsilon chain [Bacteroides sp. 9_1_42FAA]
          Length = 260

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 9/110 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPE-ALKLHGITD 67
           + FD+ETTG +   DRI+EI  +++   S +  +T ++    N   + PE +  +HGI D
Sbjct: 12  VFFDLETTGTNINTDRIVEICYLKVYPNSNEETKTMRI----NPEMHIPEQSSAIHGIYD 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
             + D P+F  +  E     + +  +    N+ +FD+  +  E  R   D
Sbjct: 68  ADVADCPTFKEVAKEIAR--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVD 115


>gi|207092434|ref|ZP_03240221.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 160

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFL 70
            D+ETTG       I+EIGAV++      NR F+  +     K+ P+ + +L GIT E  
Sbjct: 76  IDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGITYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
            + PS      E   F    N+ ++AHNA F
Sbjct: 132 LNAPSAHEALQELRLFLG--NSVFVAHNANF 160


>gi|257463061|ref|ZP_05627463.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium sp. D12]
          Length = 129

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 11/118 (9%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65
           M+ + FD ETTGL  ++  II++ A+  +D  +   T  ++  P    + S EAL +  +
Sbjct: 1   MKILYFDTETTGLTYRS-TIIQLAAIIEID-GEVKETVNLYSAPFPDSDISEEALAVTKL 58

Query: 66  TDE--FLKDKPS-----FSSIFSEFWDFFNEQNA-EWIAHNAKFDVGFINAELQRINK 115
           T E  F  D P      F+ I  ++ D +N+ +    + HN KFD+  +     R N+
Sbjct: 59  TREEIFRFDSPQLTCEMFTQILGKYVDKYNKNDKFTAVGHNVKFDLDMLRNWAYRCNE 116


>gi|330956986|gb|EGH57246.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 237

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP  L +HG
Sbjct: 40  QQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVL-IHG 98

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +    +      +    +F +F    ++  +  +A FD       L R  K+ LD
Sbjct: 99  LAPSTIAAGSEPAQALLDFMEFVG--DSPILGFHAPFD----QHMLARALKESLD 147


>gi|291614958|ref|YP_003525115.1| DNA polymerase III, subunit epsilon [Sideroxydans lithotrophicus
           ES-1]
 gi|291585070|gb|ADE12728.1| DNA polymerase III, epsilon subunit [Sideroxydans lithotrophicus
           ES-1]
          Length = 235

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 14/163 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D+ETTGL+   D +I IGAV +++       +F V L      +  E + +HGI+
Sbjct: 42  RVVVVDVETTGLNLITDTLISIGAVAVVNGRIALGDSFSVVL-KQQESSDKENILVHGIS 100

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-----INKDPLDPS 121
               +D          F ++  +  +  IA +  FD   I   +++        + LD +
Sbjct: 101 STAQRDGVDPVEALLTFLEYLGK--SRLIAFHVAFDETMIRRAMRQYLGLSFKHEWLDLA 158

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            ++  L+   R    +   L+    R+ I I   ++H AL D+
Sbjct: 159 YVMPALN---RSLMENHRVLDDWIGRFNIHIE--ARHNALADA 196


>gi|149278873|ref|ZP_01885008.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
 gi|149230492|gb|EDM35876.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
          Length = 1477

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 105/255 (41%), Gaps = 35/255 (13%)

Query: 10  IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           ++FD ETTGL         D+ N  R I+I      ++ K        + P G     +A
Sbjct: 3   LIFDTETTGLPRNWNAPITDTDNWPRCIQIAWQLHDEFGKLVEHQDYLVKPEGFNIPYDA 62

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRINKD 116
            ++HGI+ E  +++       +E  + FNE  ++    +  N  FDV  +  E  R+  D
Sbjct: 63  ERIHGISTELAEEQ---GISLAEVVEKFNEALSKARFVVGQNIGFDVNIMGCEFHRLGVD 119

Query: 117 -PLDPSRIIDT---LSIARRKHPSSRND---LNSLCK--RYGITISHRSKHGALLDSHLL 167
            P+    ++DT   ++    K P  R     L +L +  +Y   +     H A  D    
Sbjct: 120 SPMSSMPVLDTCTEVTAELLKLPGGRGGKFKLPNLTELHQYLFGVPFAEAHNATADVEAT 179

Query: 168 SDVYIKM--MVGGSQINFGFKTNEDRFFKE------EKKTVPNISLLKRDKPLFTRITKE 219
           +  ++++  M   S       TN  R F+E      E+  + +++L      +  R+ K 
Sbjct: 180 TRCFLQLIKMEVFSVEQLQCDTNYFRVFREHNPEVIERIGLSHVNLKSASDEIRKRLQKA 239

Query: 220 ELDEHDKTIQTLGKN 234
           E  +  K  QTL +N
Sbjct: 240 EGPKISK--QTLAEN 252


>gi|161507225|ref|YP_001577179.1| DNA polymerase III alpha chain [Lactobacillus helveticus DPC 4571]
 gi|160348214|gb|ABX26888.1| DNA polymerase III alpha chain [Lactobacillus helveticus DPC 4571]
          Length = 177

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++H IT + +K+ P+ + ++ +    + +      AHNA+FD   +   L R N +  +
Sbjct: 50  IQVHQITADDVKNAPTMAEVWPKIKGLY-QPGMLVAAHNARFDTNVMRQSLARYNIE--E 106

Query: 120 PSR-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P   +IDTL+ ++   P   N  L+++     + + H   H AL DS   + + I
Sbjct: 107 PHYLVIDTLATSKLFEPELPNHKLDTVSDALDVELWHH--HNALSDSEACAGILI 159


>gi|255690064|ref|ZP_05413739.1| exonuclease [Bacteroides finegoldii DSM 17565]
 gi|260624341|gb|EEX47212.1| exonuclease [Bacteroides finegoldii DSM 17565]
          Length = 259

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITD 67
          + FD+ETTG +   DRI+EI  +++  + ++ ++T ++    N   + PEA   +HGI D
Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKVYPNGNEESKTLRI----NPEMHIPEASSAVHGIYD 65

Query: 68 EFLKDKPSFSSI 79
            + D P+F  +
Sbjct: 66 ADVADCPTFKEV 77


>gi|29346773|ref|NP_810276.1| DNA Pol III epsilon chain [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338670|gb|AAO76470.1| DNA Pol III Epsilon Chain [Bacteroides thetaiotaomicron VPI-5482]
          Length = 277

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITD 67
          + FD+ETTG +   DRI+EI  +++  + ++  +T ++    N   + PEA   +HGI D
Sbjct: 28 VFFDLETTGTNINTDRIVEICYLKVYPNGNEETKTMRI----NPEMHIPEASSAVHGIYD 83

Query: 68 EFLKDKPSFSSI 79
            + D P+F  +
Sbjct: 84 ADVADCPTFKEV 95


>gi|262171676|ref|ZP_06039354.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
 gi|261892752|gb|EEY38738.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
          Length = 233

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 18/168 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            Q +L    +     ++ +HGIT   
Sbjct: 45  VALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQPTKPLEEGSVVIHGITHSE 104

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+       + SE +D    +    +AH    +  F+      +  + ++   IIDTL I
Sbjct: 105 LRHAQEPEVVLSELFDALRGKIV--VAHFRHIEREFLRQATLNLWDEAVE-FPIIDTLEI 161

Query: 130 ARRKHPSSRNDLNSLCK-------------RYGITISHRSKHGALLDS 164
                 + R+    L +             RYG+     S H AL D+
Sbjct: 162 EHYIQNAQRSLWQRLLRRPLNSVRLGQSRLRYGLPAY--SPHHALTDA 207


>gi|729197|sp|P41060|CP81_BP186 RecName: Full=Uncharacterized exonuclease CP81
 gi|3337284|gb|AAC34183.1| Orf81 [Enterobacteria phage 186]
          Length = 194

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 10/110 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +I  D ETTGL   +  I+EI  ++   +   N      L    +    EA  +HGITDE
Sbjct: 20  RIFIDTETTGL-GDDAEIVEICLIDSAGFIMLNT-----LVKPTKPIPAEATAIHGITDE 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKD 116
            +   P++  I       F E    ++ +NA +D   I   A+L  +  D
Sbjct: 74  MVMYAPTWKDIHGAVASLFFEYG--FVIYNADYDTRLIYQTAKLYGLEND 121


>gi|323145829|gb|ADX32070.1| hypothetical protein [Pseudomonas phage P3_CHA]
 gi|323146015|gb|ADX32255.1| hypothetical protein [Pseudomonas phage PAK_P3]
          Length = 305

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 95  IAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSL 144
           +AHN  KFD+  INA L + +  P  P +IIDT  IA++      N L SL
Sbjct: 132 VAHNGRKFDLPTINAHLVKHDIMPPSPYKIIDTCDIAKKVFKFPSNSLKSL 182


>gi|262038648|ref|ZP_06012015.1| exonuclease RNase T and DNA polymerase III [Leptotrichia
           goodfellowii F0264]
 gi|261747318|gb|EEY34790.1| exonuclease RNase T and DNA polymerase III [Leptotrichia
           goodfellowii F0264]
          Length = 195

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 20/179 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           I FD+ET G       ++ I A+++        + K +   + +    G   +  A+ ++
Sbjct: 6   IFFDVETNG--KMGSSVLSISAIKVSYDFEKNSWEKVSEYDRFYFRNEGEPINFGAINVN 63

Query: 64  GITDEFLKDK---PSFSSIFSEFWD---FFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           G+TDE + +K     + S F E  D    + +    ++AHN KFD  FI   L    K+ 
Sbjct: 64  GLTDEVIAEKRENADYPSTFKEDLDSFYLYCQDTKHFVAHNIKFDRSFIPFPL----KNQ 119

Query: 118 LDP-SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D     ID +     ++ S +   L    K Y + +     H +L D  +   V+ KM
Sbjct: 120 FDTMMENIDIVRAGINEYGSYKWPKLMECAKFYNVPMDEEQLHESLYDVLITFRVFYKM 178


>gi|292628026|ref|XP_002666829.1| PREDICTED: probable transcription factor PML-like isoform 1 [Danio
           rerio]
 gi|326679985|ref|XP_003201423.1| PREDICTED: probable transcription factor PML-like isoform 2 [Danio
           rerio]
          Length = 235

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 26/189 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68
           + FD+ETTGLDS  + I+++ AV          TF +F+ P  R     A ++ G + + 
Sbjct: 13  VFFDLETTGLDSSCE-IVQLAAV------SGGHTFNLFMVPR-RPFQRGASRITGFSVKH 64

Query: 69  ---FLKDKPSFSSIFSE----FWDFFNE-QNAEWIAHNA-KFDVGFINAELQRINKDP-- 117
              FL  +P  +S   E    F  F     +   + HN  +FD   +   L   +     
Sbjct: 65  QRLFLHRRPLLTSSLKEALLSFISFLRMLDHPLLLGHNIRRFDCPVLARALDEFSLRSHF 124

Query: 118 -LDPSRIIDTLSIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             + S  +DTL +AR   + H        SL K   + +S+ + H AL D   L  +Y K
Sbjct: 125 QREVSGFVDTLPLARQLLKDHGLQSFKQESLVKNL-LGVSY-AAHNALEDVQALQKLYWK 182

Query: 174 MMVGGSQIN 182
           +    +QI 
Sbjct: 183 LKPSANQIQ 191


>gi|168184675|ref|ZP_02619339.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           Bf]
 gi|237795168|ref|YP_002862720.1| putative DNA polymerase III subunit epsilon [Clostridium botulinum
           Ba4 str. 657]
 gi|182672241|gb|EDT84202.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           Bf]
 gi|229261088|gb|ACQ52121.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           Ba4 str. 657]
          Length = 195

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 55/134 (41%), Gaps = 25/134 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ----------VFLCPNGRKNS 56
           M+KI  D ETTGL        E G +  L Y   +  F+           F   +  + S
Sbjct: 1   MKKIFIDTETTGL--------EPGEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEES 52

Query: 57  PEALKLHGITDEFLK---DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
            EA+  HG + E LK       F  + SE     + +N  +IAHN  FD  F+ AE  R+
Sbjct: 53  AEAI--HGFSVEKLKILSKGKKFKDLASEISS--DLKNGIFIAHNVNFDRKFVTAEFNRL 108

Query: 114 NKDPLDPSRIIDTL 127
           N     P     T+
Sbjct: 109 NDMNWIPKEFFCTM 122


>gi|153808235|ref|ZP_01960903.1| hypothetical protein BACCAC_02523 [Bacteroides caccae ATCC 43185]
 gi|149129138|gb|EDM20354.1| hypothetical protein BACCAC_02523 [Bacteroides caccae ATCC 43185]
          Length = 259

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDE 68
          + FD+ETTG +   DRI+EI  +++  Y   N   +  L  N   + PEA   +HGI D 
Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKV--YPNGNEEAKT-LRINPEMHIPEASSAVHGIYDA 66

Query: 69 FLKDKPSFSSI 79
           + D P+F  +
Sbjct: 67 DVADCPTFKEV 77


>gi|194172953|ref|YP_002003597.1| hypothetical protein rv5_gp095 [Escherichia phage rv5]
 gi|114795991|gb|ABI79165.1| conserved hypothetical protein [Escherichia phage rv5]
          Length = 327

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 79  IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138
           +  + W + ++ +   +AHN+ FD G+ N         P  P + +DTL + ++    + 
Sbjct: 135 LIQDLWYYLDKCDVA-VAHNSGFDCGWANQRFAFHGLPPTSPYKEVDTLKMIKKAFRLNA 193

Query: 139 NDLNSLCKRYGIT 151
           N L   CK + + 
Sbjct: 194 NTLEYACKYFQLA 206


>gi|313114851|ref|ZP_07800350.1| exonuclease [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622801|gb|EFQ06257.1| exonuclease [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 329

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 11/151 (7%)

Query: 26  IIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFSEF- 83
           I+EIGAV++ + +    TF + L P   RK      K+ G+T   L            F 
Sbjct: 34  IVEIGAVKIDEDANVLDTFSIHLRPRIFRKLQHHIAKVTGLTQADLDKGEPIVQGLRRFM 93

Query: 84  -WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-- 140
            W   + + AEW       DV  +   L   N D   P+   D   +  R+HP    +  
Sbjct: 94  QWCGPDAEFAEW----GMDDVPVLKQNLYLCNIDESKPTIWYDLQQVFLREHPRKEGEGM 149

Query: 141 -LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            L S+  R G+ +  R  H AL D+   +DV
Sbjct: 150 TLESVVTRLGLPME-RQFHDALSDTLYTADV 179


>gi|300858788|ref|YP_003783771.1| hypothetical protein cpfrc_01371 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686242|gb|ADK29164.1| hypothetical protein cpfrc_01371 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206493|gb|ADL10835.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis C231]
 gi|302331048|gb|ADL21242.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276735|gb|ADO26634.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis I19]
          Length = 453

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 10/98 (10%)

Query: 12  FDIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQVFLC-PNGRKN--SPEALKLHGI 65
            D     +++ ND    I +IG V++ D   T++    +LC P    N  +P  + +HGI
Sbjct: 104 LDFAAVDVETANDDWGSICQIGVVKVKDGVITDKC--EWLCQPPAAINHFAPANIAIHGI 161

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
               +K    FS  F+E   F  +      AHNA+FD+
Sbjct: 162 RPNDVKTAQPFSECFAEMLSFVGK--LPLAAHNAQFDM 197


>gi|333030104|ref|ZP_08458165.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
          DSM 18011]
 gi|332740701|gb|EGJ71183.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
          DSM 18011]
          Length = 256

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 10/74 (13%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
          + FD+ETTG +  +DRI+EI  +++     + SKT R       P       E+  +HGI
Sbjct: 10 VFFDLETTGTNINSDRIVEICYLKVHPNGNEESKTLRINPEMPIP------AESSAIHGI 63

Query: 66 TDEFLKDKPSFSSI 79
           DE + D P+F  +
Sbjct: 64 FDEDIADCPTFKEV 77


>gi|311740580|ref|ZP_07714407.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304100|gb|EFQ80176.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 223

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 29/160 (18%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL--LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R + FD+ETT  + K  RI+    V +   D  K        L   G +   EA  +HGI
Sbjct: 7   RMLAFDLETTSANPKEARIVTSALVRIDGRDVQKVEH-----LADPGIEIPQEATNVHGI 61

Query: 66  T-----------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           T           +E LKD  +  +I + +     E     I +NA FD+  + +      
Sbjct: 62  TTEKARAEGRPHEEVLKD--TIEAIKAAW-----EDGLTLIVYNAAFDLTVLRSLTGDFT 114

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS 153
              P+    +ID +S   RK    +  L ++C+ YG+ + 
Sbjct: 115 VTGPVYDPYVIDRVSDKWRK---GKRTLGAVCEHYGVELG 151


>gi|220907840|ref|YP_002483151.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7425]
 gi|219864451|gb|ACL44790.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7425]
          Length = 164

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 12/165 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   +   +    +G V + +     + + + +CP   +   E   +HGI    
Sbjct: 5   VAIDFETA--NRAKESACAVGLVRVENLQIVQKAYYL-ICPP--QPHFEFTHIHGIRWTD 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +  +P+F  ++SE          ++IA HNA FD   ++A        P      I T+ 
Sbjct: 60  VAAQPTFGDLWSELHPLI--AGTDFIAAHNAGFDRSVLHACCNSYGI-PRPAQNFICTVQ 116

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +ARR        L  +C+  G+ + H   H AL D+   + + I 
Sbjct: 117 LARRTWSLYPTKLPDVCRFLGLELDH---HHALSDAEACAQIVIA 158


>gi|170758900|ref|YP_001785582.1| DNA polymerase III subunit epsilon [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405889|gb|ACA54300.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 309

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +FN  N    AHNA FD+  +   L+  N   +     I T
Sbjct: 58  PRMVQDELEFDKIWGKIKHYFN--NNLVTAHNASFDISVLRNTLKLYN-IKMPSFDYICT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G    H   H AL D+   S++ + +
Sbjct: 115 MKLSKNFYSNIDNVRLNTVNNFLGYKFKH---HDALADAMACSNILLNI 160


>gi|153834777|ref|ZP_01987444.1| gp41 [Vibrio harveyi HY01]
 gi|148868812|gb|EDL67880.1| gp41 [Vibrio harveyi HY01]
          Length = 218

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I+ D ETTGL S +  I+E  A+     + + +     L         +A  +HGIT+E
Sbjct: 20  AIIIDTETTGLGS-DAEIVEFTAI----CADSGKVIVNELVKPTCSIPADATAIHGITNE 74

Query: 69  FLKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            +KD P F  +FS  F    N +    I +N+ FD   I   L +
Sbjct: 75  DVKDAPDFHLVFSNHFLPLLNGR--PIIIYNSDFDTRLIIQSLDK 117


>gi|253572229|ref|ZP_04849632.1| DNA Pol III epsilon chain [Bacteroides sp. 1_1_6]
 gi|298386580|ref|ZP_06996136.1| exonuclease [Bacteroides sp. 1_1_14]
 gi|251838004|gb|EES66092.1| DNA Pol III epsilon chain [Bacteroides sp. 1_1_6]
 gi|298260957|gb|EFI03825.1| exonuclease [Bacteroides sp. 1_1_14]
          Length = 259

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITD 67
          + FD+ETTG +   DRI+EI  +++  + ++  +T ++    N   + PEA   +HGI D
Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKVYPNGNEETKTMRI----NPEMHIPEASSAVHGIYD 65

Query: 68 EFLKDKPSFSSI 79
            + D P+F  +
Sbjct: 66 ADVADCPTFKEV 77


>gi|88797051|ref|ZP_01112641.1| DNA polymerase III subunit epsilon [Reinekea sp. MED297]
 gi|88779920|gb|EAR11105.1| DNA polymerase III subunit epsilon [Reinekea sp. MED297]
          Length = 236

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIETTGL+++ D II IG V       T    + +L    R  + E++ +H IT   
Sbjct: 49  VAVDIETTGLNAEQDDIISIGLVPFTAQRITLAKARHWLV-RTRNLTSESVVVHRITHSD 107

Query: 70  LKDKPSFSSIFSE 82
           +   P   ++ SE
Sbjct: 108 IAQAPPLRAVLSE 120


>gi|260753544|ref|YP_003226437.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552907|gb|ACV75853.1| Exonuclease RNase T and DNA polymerase III [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 297

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 10/102 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-----SPEALKLHG 64
           +V D+ETTGLD + D IIE+ A+   +Y      F V     G +      +PE   + G
Sbjct: 44  LVVDVETTGLDPQRDEIIEL-AMTPFNYGLDGTIFSVGDSFQGLRQPSKPIAPEITAITG 102

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           IT+E +  +     +       F    +  IAHNA FD  F+
Sbjct: 103 ITNEMVAGQ----IVDPAAVASFAAPASLVIAHNAAFDRRFL 140


>gi|325479508|gb|EGC82604.1| conserved domain protein [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 301

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 28/124 (22%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +IV DIETTGLDS  D+++ +G + L++ +K+      +L     +N  E  +L  I ++
Sbjct: 17  EIVLDIETTGLDSSVDKLVLLGII-LVENNKS------YLVQYFAENDLEEKRLLDIYEK 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
            + +K                     I +N   FD+ F+N  L R N  P+ P R ID L
Sbjct: 70  IIPNKT-------------------IITYNGDTFDIPFLNNRLIRNNMLPVFP-RSIDLL 109

Query: 128 SIAR 131
            + +
Sbjct: 110 KVIK 113


>gi|325125846|gb|ADY85176.1| DNA polymerase III, epsilon subunit [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 286

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 26/175 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTG      +II+IGA+++ D  +T   F  ++ P  + N   +  L GI++   
Sbjct: 35  VFDLETTG-----KKIIQIGALKVRD-DQTVAKFSTYVNPLEKINDYVS-HLTGISNYQT 87

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSI 129
              P    +  +F DF  +     + HN   FD   +       N  P+   + +DTL +
Sbjct: 88  DAAPLIDEVMPDFLDFVGDDT--LVGHNILSFDCNVLAD-----NGYPVANPK-LDTLLL 139

Query: 130 ARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           A           P S   L++L + YGI I   + H A+ D    + VY K+  G
Sbjct: 140 ANSYKKRGLFADPISNVRLSTLKEYYGINI---NSHIAISDCITNNIVYQKLRDG 191


>gi|255324551|ref|ZP_05365668.1| DNA polymerase III subunit epsilon [Corynebacterium
           tuberculostearicum SK141]
 gi|255298457|gb|EET77757.1| DNA polymerase III subunit epsilon [Corynebacterium
           tuberculostearicum SK141]
          Length = 223

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 29/160 (18%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL--LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R + FD+ETT  + K  RI+    V +   D  K        L   G +   EA  +HGI
Sbjct: 7   RMLAFDLETTSANPKEARIVTSALVRIDGRDVQKVEH-----LADPGIEIPQEATNVHGI 61

Query: 66  T-----------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           T           +E LKD  +  +I + +     E     I +NA FD+  + +      
Sbjct: 62  TTEKARAEGRPHEEVLKD--TVEAIKAAW-----EDGLTLIVYNAAFDLTVLRSLTGDFT 114

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS 153
              P+    +ID +S   RK    +  L ++C+ YG+ + 
Sbjct: 115 VTGPVYDPYVIDRVSDKWRK---GKRTLGAVCEHYGVELG 151


>gi|327198232|ref|YP_004306808.1| putative DNA polymerase [Pseudomonas phage KPP10]
 gi|297591758|dbj|BAJ09178.1| putative DNA polymerase [Pseudomonas phage KPP10]
          Length = 305

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 95  IAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSL 144
           +AHN  KFD+  INA L + +  P  P +IIDT  IA++      N L SL
Sbjct: 132 VAHNGRKFDLPTINAHLVKHDILPPSPYKIIDTCDIAKKVFKFPSNSLKSL 182


>gi|167042103|gb|ABZ06837.1| hypothetical protein ALOHA_HF4000ANIW93E5ctg6g5 [uncultured
          marine crenarchaeote HF4000_ANIW93E5]
          Length = 182

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
          +N ++   FDIETTG+DS+ D++I I  V  LD+       Q+ + P    +    LK
Sbjct: 8  RNGLQLFYFDIETTGIDSEKDKVITIQFVN-LDFWNPQMAAQITILPEWESSEENILK 64


>gi|153832837|ref|ZP_01985504.1| gp41 [Vibrio harveyi HY01]
 gi|148870971|gb|EDL69861.1| gp41 [Vibrio harveyi HY01]
          Length = 207

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I+ D ETTGL S +  I+E  A+     + + +     L         +A  +HGIT+E
Sbjct: 9   AIIIDTETTGLGS-DAEIVEFTAI----CADSGKVIVNELVKPTCSIPADATAIHGITNE 63

Query: 69  FLKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            +KD P F  +FS  F    N +    I +N+ FD   I   L +
Sbjct: 64  DVKDAPDFHLVFSNHFLPLLNGRPI--IIYNSDFDTRLIIQSLDK 106


>gi|153939051|ref|YP_001391011.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           F str. Langeland]
 gi|152934947|gb|ABS40445.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           F str. Langeland]
 gi|295319069|gb|ADF99446.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           F str. 230613]
          Length = 195

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 25/134 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF----QVFLCPN------GRKNS 56
           M+KI  D ETTGL        E G +  L Y   +  F    +VF   N        + S
Sbjct: 1   MKKIFIDTETTGL--------EPGEIIQLTYCVCDINFRGEEKVFFAKNFFFDVDYIEES 52

Query: 57  PEALKLHGITDEFLK---DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
            EA+  HG + E LK       F  + SE     + ++  +IAHN  FD  F+ AE  R+
Sbjct: 53  AEAI--HGFSVEKLKILSKGKKFKDLASEISS--DLKDGIFIAHNVNFDRKFVTAEFNRL 108

Query: 114 NKDPLDPSRIIDTL 127
           N     P     T+
Sbjct: 109 NDMNWIPKEFFCTM 122


>gi|331677520|ref|ZP_08378195.1| ribonuclease T [Escherichia coli H591]
 gi|331073980|gb|EGI45300.1| ribonuclease T [Escherichia coli H591]
          Length = 146

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 95  IAHNAKFDVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
           +AHNA FD  F+ A  +R  + ++P  P    DT ++A       +  L+  C+  G+  
Sbjct: 49  VAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDF 106

Query: 153 SHRSKHGALLDSHLLSDVYIKMM 175
                H AL D+   + ++ +++
Sbjct: 107 DSTQAHSALYDTERTAVLFCEIV 129


>gi|260102518|ref|ZP_05752755.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           helveticus DSM 20075]
 gi|260083660|gb|EEW67780.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           helveticus DSM 20075]
 gi|328461804|gb|EGF34034.1| DNA polymerase III alpha chain [Lactobacillus helveticus MTCC 5463]
          Length = 177

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++H IT + +K+ P+ + ++ +    + +      AHNA+FD   +   L R N +  +
Sbjct: 50  IQVHQITADDVKNAPTMAEVWPKIKGLY-QPGMLVAAHNARFDTNVMRQSLARYNIE--E 106

Query: 120 PSR-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P   +IDTL+ ++   P   N  L+++     + + H   H AL DS   + + I
Sbjct: 107 PHYLVIDTLATSKLFEPELPNHKLDTVSDALDVELWHH--HNALSDSEACARILI 159


>gi|255524855|ref|ZP_05391804.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|255511425|gb|EET87716.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
          Length = 306

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 11/128 (8%)

Query: 50  PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--N 107
           P   +  P  + +HGI    ++++P F  ++ +   +F+      IAHNA FD+  +   
Sbjct: 41  PKEMRFMPINIGIHGIRPAVVENEPEFDKVWEKIKHYFDGNLV--IAHNASFDISVLRKT 98

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHL 166
           AEL  I+   L   + I T+ +++  +    N  LN++    G    H   H AL D+  
Sbjct: 99  AELYDID---LPKFKYICTMKLSKNFYRGIENAKLNTVNDFLGYEFKH---HDALYDALA 152

Query: 167 LSDVYIKM 174
            S++ + +
Sbjct: 153 CSNILLNI 160


>gi|94502355|ref|ZP_01308822.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
 gi|94451087|gb|EAT14045.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
          Length = 511

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 12/117 (10%)

Query: 10  IVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVF------LCPNGRKNSP 57
           I+FD ETTGL    D       II +  +  L +   +   Q+       + P G +   
Sbjct: 3   IIFDTETTGLPLPKDFNPPIINIINLPRLVKLSWVLLDEKLQLIELKDYIIKPEGYEIPF 62

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            + K+HGI+ ++  +K    +   E ++   +++   I HN  FD+  + AE  RIN
Sbjct: 63  NSTKIHGISTKYAIEKGIKINFVLEEFNLIIKKSNFLIGHNVFFDIKIVCAEFIRIN 119


>gi|297622496|ref|YP_003703930.1| exonuclease RNase T and DNA polymerase III [Truepera radiovictrix
           DSM 17093]
 gi|297163676|gb|ADI13387.1| Exonuclease RNase T and DNA polymerase III [Truepera radiovictrix
           DSM 17093]
          Length = 224

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 75/160 (46%), Gaps = 12/160 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTGL  + D  + +G V L+           +     ++   ++  +HG+TD+ 
Sbjct: 43  VAVDLETTGLRPRWDAPLSVGWV-LVRAGAIELATARYAVLRAKREVAQSATVHGLTDDA 101

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D    +++ +E            +AH+A  ++ F++   +     PL   R++DTL++
Sbjct: 102 VADGEDAAAVLAEL--LAVLAGRVLVAHHAAIELRFLDRLCREHFGGPL-LVRVVDTLAL 158

Query: 130 ARR---KHPSSRND---LNSLCKRYGITISHRSKHGALLD 163
           A R   +H +   +   L+++  RYG  +   + H AL D
Sbjct: 159 AARSAERHGAVDENALRLHAVRARYG--LPRYAAHSALSD 196


>gi|311741087|ref|ZP_07714912.1| DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303889|gb|EFQ79967.1| DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 432

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 11/100 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN---GRKNSPEALKLHGIT 66
           +   ++TTG+     RI+ I A+   D  +  + F   L P+   G ++      LHG++
Sbjct: 56  VALTLQTTGIHPSTGRIVTIDAIAFNDAGEQGQLFHAVLKPDIDAGPRH------LHGLS 109

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
              ++  P+F  I        + +    I H+  +  GF+
Sbjct: 110 TTDIEQAPAFGKILKSLDRLIDGRT--LIVHDLPYTWGFL 147


>gi|145588723|ref|YP_001155320.1| DNA polymerase III subunit epsilon [Polynucleobacter necessarius
          subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047129|gb|ABP33756.1| Exonuclease, RNase T and DNA polymerase III [Polynucleobacter
          necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 218

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 37/55 (67%), Gaps = 2/55 (3%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLH 63
          +V D ETTGL+   D+II IGAV+++ +   T+   ++ + P+ ++ S E++K+H
Sbjct: 43 VVIDCETTGLNVAQDQIISIGAVKIVGNQLITSERLELLVKPD-KEVSAESVKIH 96


>gi|9630507|ref|NP_046936.1| gp41 [Enterobacteria phage N15]
 gi|3192726|gb|AAC19079.1| gp41 [Enterobacteria phage N15]
          Length = 304

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 23/144 (15%)

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-------------- 102
           PE  +++ IT+E +   P++  +F +     ++   +W+A N+ FD              
Sbjct: 63  PEVTEINHITNEMVASAPAWCDVFPKVLAIISKH--KWLAWNSGFDARMLEQTCLNTIFL 120

Query: 103 ---VGFINAELQRINKDPLDPSRIIDT-LSIARRKHPS-SRNDLNSLCKRYGITISHRSK 157
                ++ A + RI+   +D   + DT       KH +  R  L     R+G+ +     
Sbjct: 121 NKNAYYVTAMVSRIHTSHIDAKAVYDTWYGEYDAKHQAFKRQSLTIAAARHGVLL--EGA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H AL D  ++  V  K+     QI
Sbjct: 179 HRALADCKMVLAVLQKVCAPVPQI 202


>gi|77412699|ref|ZP_00788952.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
 gi|77161250|gb|EAO72308.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
          Length = 240

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 20/105 (19%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-----------------G 52
           +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P                  G
Sbjct: 131 VVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDPGHPLSAFTTELTGITDDPG 189

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97
              S    +L GITD  ++       +  EF +F   Q    +AH
Sbjct: 190 HPLSAFTTELTGITDNHVRGSKPILQVLQEFQNFC--QGTVLVAH 232


>gi|332148536|dbj|BAK20117.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
 gi|332148540|dbj|BAK20119.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
 gi|332148542|dbj|BAK20120.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
 gi|332148544|dbj|BAK20121.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
 gi|332148550|dbj|BAK20124.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
          Length = 238

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 123 IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +IDTL +AR  +P  +N  LN+LCK++ I ++    H A+ D+     + +KM+   ++
Sbjct: 9   VIDTLELARFLYPEFKNHRLNTLCKKFDIELTQH--HRAVFDAEATGYLLLKMLKDAAE 65


>gi|329667930|gb|AEB93878.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii DPC
           6026]
          Length = 320

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 9/157 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDEF 69
           + D+ETTGL    DRI E+G ++ + + +   TF ++   P+  K      KL+GI +  
Sbjct: 35  LIDVETTGLSPYRDRITEMGGLK-VRHGEVVATFSELVKFPDSNKVPAFITKLNGIDEAT 93

Query: 70  LKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +++K  P   +I  ++ +F        + +N  FD+ F+    ++ +   L+ +  +D  
Sbjct: 94  IEEKGLPVQEAI-KKYREFIGSDPI--VGYNVNFDLNFVYDLAEKYHLTVLN-NDYVDVY 149

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            +AR  +P  +++    C  + + I+   +H  L D 
Sbjct: 150 RLARSFYPQEQHNRLLDCM-HRLDIAETQEHRGLDDC 185


>gi|295103993|emb|CBL01537.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Faecalibacterium prausnitzii SL3/3]
          Length = 330

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 21/156 (13%)

Query: 26  IIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFL-KDKPSFSSIFSEF 83
           I+EIGAV++ + +    TF + L P   RK      K+ G+T   L K +P    +    
Sbjct: 34  IVEIGAVKIDEDANVLDTFSIHLRPRIFRKLQHHIAKVTGLTQADLDKGEPIVQGL---- 89

Query: 84  WDFFNEQNAEWIAHNAKF------DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS 137
                 +  +W   +A+F      DV  +   L   N D   P+   D   +  R+HP  
Sbjct: 90  -----RRFMQWCGPDAEFAEWGLDDVPVLKQNLFLCNLDESRPTVWYDLQQVFLREHPRK 144

Query: 138 RND---LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             +   L S+  R GI +  R  H AL D+   +DV
Sbjct: 145 EGEGMTLESVVTRMGIPM-ERPFHDALSDTLYTADV 179


>gi|254884285|ref|ZP_05256995.1| DNA Pol III epsilon chain [Bacteroides sp. 4_3_47FAA]
 gi|254837078|gb|EET17387.1| DNA Pol III epsilon chain [Bacteroides sp. 4_3_47FAA]
          Length = 260

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 9/110 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITD 67
           + FD+ETTG +   DRI+EI  +++  + ++  +T ++    N   + PE +  +HGI D
Sbjct: 12  VFFDLETTGTNINTDRIVEICYLKVYPNGNEETKTMRI----NPEMHIPEQSSAIHGIYD 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
             + D P+F  +  E     + +  +    N+ +FD+  +  E  R   D
Sbjct: 68  ADVADCPTFKEVAKEIAR--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVD 115


>gi|160882256|ref|ZP_02063259.1| hypothetical protein BACOVA_00202 [Bacteroides ovatus ATCC 8483]
 gi|260173820|ref|ZP_05760232.1| DNA Pol III epsilon chain [Bacteroides sp. D2]
 gi|299146573|ref|ZP_07039641.1| exonuclease [Bacteroides sp. 3_1_23]
 gi|315922083|ref|ZP_07918323.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156112345|gb|EDO14090.1| hypothetical protein BACOVA_00202 [Bacteroides ovatus ATCC 8483]
 gi|298517064|gb|EFI40945.1| exonuclease [Bacteroides sp. 3_1_23]
 gi|313695958|gb|EFS32793.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 259

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDE 68
          + FD+ETTG +   DRI+EI  +++  Y   N   +  L  N   + PEA   +HGI D 
Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKV--YPNGNEEAKT-LRINPEMHIPEASSAIHGIYDA 66

Query: 69 FLKDKPSFSSI 79
           + D P+F  +
Sbjct: 67 DVVDCPTFKEV 77


>gi|16082354|ref|NP_394831.1| hypothetical protein Ta1376 [Thermoplasma acidophilum DSM 1728]
 gi|10640719|emb|CAC12497.1| hypothetical protein [Thermoplasma acidophilum]
          Length = 188

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 10/172 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68
           I  D ETTGLD     +I +GAV    Y   +  F +   P+      + AL ++G T E
Sbjct: 2   IFIDTETTGLDPTKCSVISVGAVV---YEDPSSRFYMEARPDPDAMIDDGALAVNGFTKE 58

Query: 69  FLKD-KPSFSSIFSEFWDFFNEQNAEWI--AHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +L     +   + + F +++   ++++    +N  FD+ F++ E    +   +   R ID
Sbjct: 59  YLSSIANAMYDMLTTFTEWYASNSSDYTVAGYNIDFDISFLSQECLMNSVRMIRIDRRID 118

Query: 126 TLSIARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             ++      +   R  L+ L    G+  + R  H AL  +   ++ Y  ++
Sbjct: 119 LKNLFETSDLYKGGRKRLDDLLMALGLG-TERKPHNALYGALAEAEAYAMLV 169


>gi|328865534|gb|EGG13920.1| hypothetical protein DFA_11681 [Dictyostelium fasciculatum]
          Length = 383

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 21/105 (20%)

Query: 10  IVFDIETTGL-DSKNDRIIEIGAVELLD----YSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + FD ETTGL  S   +IIE+  + + D    Y K N T  +    +G      A K HG
Sbjct: 82  LFFDTETTGLATSTTSQIIELSLINIKDGDSFYRKVNPTIPI---EDG------ATKKHG 132

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAE-------WIAHNAKFD 102
           +T++ L   P +  +  E   F ++            +AHN KFD
Sbjct: 133 MTNQSLAGHPYWEDVEPELIQFLDKYCVGDTPVEIIIVAHNEKFD 177


>gi|319953453|ref|YP_004164720.1| DNA polymerase iii, alpha subunit [Cellulophaga algicola DSM 14237]
 gi|319422113|gb|ADV49222.1| DNA polymerase III, alpha subunit [Cellulophaga algicola DSM 14237]
          Length = 1479

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 19/134 (14%)

Query: 10  IVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPE 58
           ++FD ETTGL  + D          R I+I A +L D        Q +L  P+G     +
Sbjct: 3   LIFDTETTGLPKRWDVPFTDTDNWPRCIQI-AWQLHDDMGNLIEHQDYLVQPDGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN- 114
           A ++HGI+    + K    ++  E    FNE  A+    +  N  FD+  + AE  R+  
Sbjct: 62  AEQIHGISTALAEQKGVPLAVVLE---KFNEAMAKTKFVVGQNVGFDLNIMGAEFHRMGV 118

Query: 115 KDPLDPSRIIDTLS 128
           ++PL    ++DT +
Sbjct: 119 ENPLQELPVLDTCT 132


>gi|226949657|ref|YP_002804748.1| exonuclease family protein [Clostridium botulinum A2 str. Kyoto]
 gi|226843422|gb|ACO86088.1| exonuclease family protein [Clostridium botulinum A2 str. Kyoto]
          Length = 253

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 19/242 (7%)

Query: 7   MRKIVFDIE-TTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEA 59
           M  I+FD+E   G ++K +      II+IGA++L +   T  TF   + P    N +P  
Sbjct: 1   MNYIIFDLEFNQGYNNKIEIKCPFEIIQIGAIKLNENFTTIDTFNALIKPEIYSNLNPFV 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPL 118
             L  +T + L     F  ++ +F +F N+ +N   I         F N     ++ + +
Sbjct: 61  KNLTNLTMDSLNKANPFREVYKDFLEFLNKNRNIFCIWGMTDMKELFRNIVYYELDTESM 120

Query: 119 DPSRIIDTLSIARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P   I+  +   +   +P S N  L++  + + IT  +   H A  D+   ++V+ K+ 
Sbjct: 121 -PKEYINVQAYTGKYLNYPKSINVGLSNAVELFHIT-KNNDFHNAFNDAFYTAEVFKKIY 178

Query: 176 VGGSQINFGFKTNEDRFF--KEEKKTVPNISLLKRDKPLFTRITKEELDEHD--KTIQTL 231
               +      TN    +  K  K  +  +SL K+ + +F   TK  L E D  K   T+
Sbjct: 179 SEKIKTKIYKPTNNSTTYRNKNTKTRIDTVSLFKQFEKMFN--TKLTLQEQDMIKLAYTM 236

Query: 232 GK 233
           GK
Sbjct: 237 GK 238


>gi|297814530|ref|XP_002875148.1| hypothetical protein ARALYDRAFT_904512 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320986|gb|EFH51407.1| hypothetical protein ARALYDRAFT_904512 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 455

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRII 124
           T  +LK++P+ S  ++    ++   N  WI H+  K D   +  E + I K P  P  II
Sbjct: 249 TPAWLKNEPTLSESYNRV--YYMLHNKTWIGHDLRKSDFPMLEKECKHIGKSPPRPKEII 306

Query: 125 DTL 127
           DT+
Sbjct: 307 DTV 309


>gi|59713121|ref|YP_205897.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114]
 gi|59481222|gb|AAW87009.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
          Length = 238

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 5/121 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGLD+  + II IG V         R  Q +           ++ +HGIT   
Sbjct: 49  VALDFETTGLDANQNSIISIGLVPFTLERIFCRQSQHWFVKAQDSLEENSVVIHGITHSD 108

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128
           L+  P    I  +  D    +    + H  + +  F +A L+  I +  + P  ++DT+ 
Sbjct: 109 LQGAPDLRRILEQVLDALAGKVV--VVHYRRIERDFFDANLRSLIGEGIVFP--VVDTMQ 164

Query: 129 I 129
           I
Sbjct: 165 I 165


>gi|237718360|ref|ZP_04548841.1| DNA Pol III Epsilon Chain [Bacteroides sp. 2_2_4]
 gi|229452293|gb|EEO58084.1| DNA Pol III Epsilon Chain [Bacteroides sp. 2_2_4]
          Length = 243

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDE 68
          + FD+ETTG +   DRI+EI  +++  Y   N   +  L  N   + PEA   +HGI D 
Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKV--YPNGNEEAKT-LRINPEMHIPEASSAIHGIYDA 66

Query: 69 FLKDKPSFSSI 79
           + D P+F  +
Sbjct: 67 DVVDCPTFKEV 77


>gi|288800983|ref|ZP_06406439.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331917|gb|EFC70399.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
          Length = 208

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 12/115 (10%)

Query: 10  IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPE 58
           + FD ETTG+         D+ N  R+++I  +   +     +  Q   + P G +    
Sbjct: 17  LFFDTETTGIPNDYNAPSEDTNNWPRLVQIAWLITRENGDIYKELQSRIISPEGFRIPQS 76

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           ++ +HGIT E  ++D      + ++F +  +  +   + HN  FD+  + AEL R
Sbjct: 77  SINIHGITQEKAVEDGEDLCDVLNDFVNDVDYNDVILVGHNIYFDIHVVTAELIR 131


>gi|269140407|ref|YP_003297108.1| Orf81 bacteriophage 186 [Edwardsiella tarda EIB202]
 gi|267986068|gb|ACY85897.1| Orf81 bacteriophage 186 [Edwardsiella tarda EIB202]
          Length = 199

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 5   NKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N +RK  + D ETTG+        EI +  ++D   T   F   + P     +     +H
Sbjct: 25  NWLRKCNILDTETTGVKEN----AEIVSAAIIDQDGT-VLFHSLIKP-VNPITEITTAIH 78

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
           GIT+E + +KP+++ +  E     N   A  + +NA+FD+
Sbjct: 79  GITNEMVAEKPTWAEVHDEIARILN--TAPLVVYNAQFDM 116


>gi|255534927|ref|YP_003095298.1| DNA polymerase III subunit epsilon [Flavobacteriaceae bacterium
           3519-10]
 gi|255341123|gb|ACU07236.1| DNA polymerase III subunit epsilon [Flavobacteriaceae bacterium
           3519-10]
          Length = 185

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 50  PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           PN     P  + +HGIT   ++D P+F  I+ E  +         +AHNA FD G + + 
Sbjct: 43  PNYPYFHPRNIDVHGITPRDVQDSPTFDEIWHEAENLM--YGNLMVAHNAGFDAGVLRSC 100

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHR 155
           L      K  L+    + ++SIA++   +  +  L SL +++ I+  H 
Sbjct: 101 LDYYGFYKPKLN---YLCSISIAKKSWKNLPKYGLKSLAEQHQISFKHH 146


>gi|256022684|ref|ZP_05436549.1| ribonuclease T [Escherichia sp. 4_1_40B]
          Length = 130

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 95  IAHNAKFDVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
           +AHNA FD  F+ A  +R  + ++P  P    DT ++A       +  L+  C+  G+  
Sbjct: 33  VAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGL--ALGQTVLSKACQTAGMDF 90

Query: 153 SHRSKHGALLDSHLLSDVYIKMM 175
                H AL D+   + ++ +++
Sbjct: 91  DSTQAHSALYDTERTAVLFCEIV 113


>gi|150005410|ref|YP_001300154.1| DNA Pol III epsilon chain [Bacteroides vulgatus ATCC 8482]
 gi|212694908|ref|ZP_03303036.1| hypothetical protein BACDOR_04445 [Bacteroides dorei DSM 17855]
 gi|237727134|ref|ZP_04557615.1| DNA Pol III epsilon chain [Bacteroides sp. D4]
 gi|265750418|ref|ZP_06086481.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_33FAA]
 gi|294777188|ref|ZP_06742645.1| exonuclease [Bacteroides vulgatus PC510]
 gi|319640629|ref|ZP_07995346.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_40A]
 gi|149933834|gb|ABR40532.1| DNA Pol III epsilon chain [Bacteroides vulgatus ATCC 8482]
 gi|212662468|gb|EEB23042.1| hypothetical protein BACDOR_04445 [Bacteroides dorei DSM 17855]
 gi|229433990|gb|EEO44067.1| DNA Pol III epsilon chain [Bacteroides dorei 5_1_36/D4]
 gi|263237314|gb|EEZ22764.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_33FAA]
 gi|294449057|gb|EFG17600.1| exonuclease [Bacteroides vulgatus PC510]
 gi|317387750|gb|EFV68612.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_40A]
          Length = 258

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 9/110 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITD 67
           + FD+ETTG +   DRI+EI  +++  + ++  +T ++    N   + PE +  +HGI D
Sbjct: 10  VFFDLETTGTNINTDRIVEICYLKVYPNGNEETKTMRI----NPEMHIPEQSSAIHGIYD 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
             + D P+F  +  E     + +  +    N+ +FD+  +  E  R   D
Sbjct: 66  ADVADCPTFKEVAKEIAR--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVD 113


>gi|323144276|ref|ZP_08078898.1| exonuclease [Succinatimonas hippei YIT 12066]
 gi|322415946|gb|EFY06658.1| exonuclease [Succinatimonas hippei YIT 12066]
          Length = 232

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 15/171 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            D ETTGLD   D I+ +G V++    +D+S     F  F+    +  S  A+  H IT 
Sbjct: 50  LDFETTGLDFNEDLILSMGWVDINRGEIDFSS---GFHTFINIADKVKSHSAVINH-ITP 105

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDPSRIIDT 126
           E L    S +   ++  +    +    I H A  +  F++  L+   KDP L P   +DT
Sbjct: 106 EMLLHGVSLNEALNQLIEHI--KGRIIICHAAVIEKTFLSKALEL--KDPALLPLIFLDT 161

Query: 127 LSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L + +    H  + NDL     R    +     H A  DS   ++V++  +
Sbjct: 162 LLLEKSFSTHTGNVNDLRLSSIRRRRKLPAYCAHNAFADSVATAEVFLAQV 212


>gi|270160326|ref|ZP_06188980.1| exonuclease/polymerase-like protein [Legionella longbeachae D-4968]
 gi|308051563|ref|YP_003915137.1| putative exonuclease [Legionella longbeachae NSW150]
 gi|269987175|gb|EEZ93432.1| exonuclease/polymerase-like protein [Legionella longbeachae D-4968]
 gi|288859988|emb|CBJ13980.1| putative exonuclease [Legionella longbeachae NSW150]
          Length = 301

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 20/110 (18%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNR--------TFQVFLCPNGRKNSPEALKL 62
           + D+ET G+D+    IIEIG   +L +S +N         T+     P G+   PE  K+
Sbjct: 41  IIDLETMGMDATQHEIIEIG---MLSFSFSNEDGILEIKHTYNELNDP-GKPIPPEITKI 96

Query: 63  HGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            GI +E +  K  +++ +F        +++   I HNA+FD  F+  ELQ
Sbjct: 97  TGIRNEDVSGKAINWTFVFQVL-----KESHLIICHNAQFDRNFL--ELQ 139


>gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 879

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 54/138 (39%), Gaps = 28/138 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD ETTGLD+K  +I+             N  F V L  N      E + L       
Sbjct: 319 IAFDTETTGLDTKEAKIVGFSFC-----MNENEAFYVPLTHN-YLGVGEQISLQSA---- 368

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
              K +   IF+ F           I HN K+D   I       N D   P +  DT+ +
Sbjct: 369 ---KKAIEVIFNHF----------VIGHNLKYDFKIIQN-----NFDLNLPQKYADTMIL 410

Query: 130 ARRKHPSSRNDLNSLCKR 147
           A  K+PS R +++ L  R
Sbjct: 411 AWLKNPSLRVNMDDLALR 428


>gi|258624472|ref|ZP_05719419.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus
           VM603]
 gi|258583319|gb|EEW08121.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus
           VM603]
          Length = 233

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 18/168 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            Q +L    +     ++ +HGIT   
Sbjct: 45  VALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQPTKPLEEGSVVIHGITHSE 104

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+       + SE +D    +    +AH    +  F+      +  + ++   IIDTL I
Sbjct: 105 LRHAQEPEVVLSELFDALRGKIV--VAHFRHIEREFLRQATLNLWDEAVE-FPIIDTLEI 161

Query: 130 ARRKHPSSRNDLNSLCK-------------RYGITISHRSKHGALLDS 164
                 + R+    L               RYG+     S H AL D+
Sbjct: 162 EHYVQNAQRSLWQRLLSRPLNSVRLGQSRLRYGLPA--YSPHHALTDA 207


>gi|148979109|ref|ZP_01815317.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
 gi|145961975|gb|EDK27264.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
          Length = 238

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 5/121 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+   D II IG V         R  + +     +K   E++ +HGIT   
Sbjct: 49  LALDFETTGLNPSKDGIITIGLVPFTLNRIYLRQARHWTLRPRQKLEEESVVIHGITHND 108

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTLS 128
           + D P    +  E            + H  + +  F+N  L+ R+N+    P  ++DTL 
Sbjct: 109 IIDAPDLDEVLDEVLQAMAGHIP--VVHYRRIERDFLNNALKVRLNEGIEFP--VLDTLE 164

Query: 129 I 129
           I
Sbjct: 165 I 165


>gi|91216678|ref|ZP_01253643.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC
           700755]
 gi|91185147|gb|EAS71525.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC
           700755]
          Length = 1452

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 13/131 (9%)

Query: 10  IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           I+FD ETTGL         D+ N  R I+I      ++    +     + P G     +A
Sbjct: 3   IIFDTETTGLPKRWNAPITDTDNWPRAIQIAWQVHDEWGNLVKAKDYLIRPEGFDIPYDA 62

Query: 60  LKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            ++HGI+    L+   S   + +EF +  +E     +  N  FDV  + AE  R   + L
Sbjct: 63  ERIHGISTALALQKGESLDMVLAEFNEALSESKF-VVGQNVGFDVNVMGAEFHRAQLESL 121

Query: 119 DPSR-IIDTLS 128
             S  ++DT +
Sbjct: 122 MASMPVLDTCT 132


>gi|297814532|ref|XP_002875149.1| hypothetical protein ARALYDRAFT_346764 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320987|gb|EFH51408.1| hypothetical protein ARALYDRAFT_346764 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 467

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRII 124
           T  +LK++P+ S  ++  +   +  N  WI H+  K D   +  E + I K P  P  II
Sbjct: 287 TPAWLKNEPTLSESYNRVYYMLH--NKTWIGHDLRKSDFPMLEKECKHIGKSPPRPKEII 344

Query: 125 DTL 127
           DT+
Sbjct: 345 DTV 347


>gi|42519676|ref|NP_965606.1| hypothetical protein LJ0649 [Lactobacillus johnsonii NCC 533]
 gi|41583965|gb|AAS09572.1| hypothetical protein LJ_0649 [Lactobacillus johnsonii NCC 533]
          Length = 320

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 9/157 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDEF 69
           + D+ETTGL    DRI E+G ++ + + +   TF ++   P+  K      KL+GI +  
Sbjct: 35  LIDVETTGLSPYRDRITEMGGLK-VRHGEVVATFSELVKFPDSNKVPAFITKLNGIDETT 93

Query: 70  LKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +++K  P   +I  ++ +F        + +N  FD+ F+    ++ +   L+ +  +D  
Sbjct: 94  IEEKGLPVQEAI-KKYREFIGSDPI--VGYNVNFDLNFVYDLAEKYHLTVLN-NDYVDVY 149

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            +AR  +P  +++    C  + + I+   +H  L D 
Sbjct: 150 RLARSFYPQEQHNRLLDC-MHRLDIAETQEHRGLDDC 185


>gi|90424784|ref|YP_533154.1| exonuclease [Rhodopseudomonas palustris BisB18]
 gi|90106798|gb|ABD88835.1| Exonuclease [Rhodopseudomonas palustris BisB18]
          Length = 314

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           K+HG++   +KD   F  + SEF    + Q+   +AHNA+FDV  + A L
Sbjct: 52  KVHGLSPSEVKDAQEFPEVISEFLS--DIQSGLLLAHNAQFDVDVLCATL 99


>gi|297814534|ref|XP_002875150.1| hypothetical protein ARALYDRAFT_904518 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320988|gb|EFH51409.1| hypothetical protein ARALYDRAFT_904518 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 493

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRII 124
           T  +LK++P+ S  ++  +   +  N  WI H+  K D   +  E + I K P  P  II
Sbjct: 287 TPAWLKNEPTLSESYNRVYYMLH--NKTWIGHDLRKSDFPMLEKECKHIGKSPPRPKEII 344

Query: 125 DTL 127
           DT+
Sbjct: 345 DTV 347


>gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221]
 gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221]
 gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3]
          Length = 879

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 54/138 (39%), Gaps = 28/138 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD ETTGLD+K  +I+             N  F V L  N      E + L       
Sbjct: 319 IAFDTETTGLDTKEAKIVGFSFC-----MNENEAFYVPLTHN-YLGVGEQISLQSA---- 368

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
              K +   IF+ F           I HN K+D   I       N D   P +  DT+ +
Sbjct: 369 ---KKAIEVIFNHF----------VIGHNLKYDFKIIQN-----NFDLNLPQKYADTMIL 410

Query: 130 ARRKHPSSRNDLNSLCKR 147
           A  K+PS R +++ L  R
Sbjct: 411 AWLKNPSLRVNMDDLALR 428


>gi|120553834|ref|YP_958185.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
 gi|120323683|gb|ABM17998.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
          Length = 235

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           ++ R IV D+ETTGL++  D +I IGAV +       N  F + L      +  E + +H
Sbjct: 37  SRSRLIVLDLETTGLNASKDEVIAIGAVAIEGGVIHLNDQFDLILR-RPELDIRETVLIH 95

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           GI  E L              ++ N      +A+++ FD  F+   L+
Sbjct: 96  GIGPEALTQGYETQDALLYLLEWMNGDPI--LAYHSAFDQKFLEKTLK 141


>gi|170752204|ref|YP_001783349.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659331|gb|ACB28381.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
          Length = 298

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN----GRKNSP-EALKLHG 64
           +V D+ETTG D   D +IE+G ++  +Y  + R ++V    N     RK  P E  +L G
Sbjct: 42  LVVDVETTGTDFGTDEVIELGILK-FEYGASGRIYRVLDTLNQLQEPRKPIPVEITRLTG 100

Query: 65  ITD 67
           ITD
Sbjct: 101 ITD 103


>gi|269963087|ref|ZP_06177423.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832219|gb|EEZ86342.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 217

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I+ D ETTGL S +  I+E  A+     + + +     L         +A  +HGIT+E
Sbjct: 19  AIIIDTETTGLGS-DAEIVEFTAI----CADSGKVIVNELVKPTCSIPADATAIHGITNE 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQR 112
            +KD P F  +FS    F    N    I +N+ FD   I   L +
Sbjct: 74  DVKDAPDFHLVFSNH--FLPXLNGRLIIIYNSDFDTRLIIQSLDK 116


>gi|255292918|dbj|BAH90017.1| DNA polymerase III epsilon subunit [uncultured bacterium]
 gi|255293172|dbj|BAH90263.1| DNA polymerase III epsilon subunit [uncultured bacterium]
          Length = 297

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 12/104 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS------KTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ETTGLD + D IIE+ A+   +Y           +FQ    P+ +  +PE   + 
Sbjct: 44  LVVDVETTGLDPQRDEIIEL-AMTPFNYGLDGTIFSVGDSFQRLRQPS-KPIAPEITAIT 101

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           GIT+E +  +     +       F    +  IAHNA FD  F+ 
Sbjct: 102 GITNEMVAGQ----IVDPAAVASFAAPASLVIAHNAAFDRRFLE 141


>gi|296272299|ref|YP_003654930.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM
           7299]
 gi|296098846|gb|ADG94796.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM
           7299]
          Length = 209

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 13/172 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT--NRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  D ETTGL+ K D I+ IGAV ++  +K   ++TF +++ P+    S +++ +H I  
Sbjct: 32  VCLDCETTGLNPKKDEILSIGAV-IIKENKVLMSKTFNIYVKPSDNI-STQSILIHRIRP 89

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L++         E   F   +    + +  KFD+  I+   ++     L P+  I+  
Sbjct: 90  IDLENAIDPEEAIYELLKFIGSR--VIVGYYIKFDIAIISRYTKKYIGIKL-PNSSIEVS 146

Query: 128 SIARRKHPSSRNDLNSLCKRYG-----ITISHRSKHGALLDSHLLSDVYIKM 174
           S+  R     R+D   +  ++      + I    KH AL D+ + S +++K+
Sbjct: 147 SMYYRTK-KRRSDYEFVDLKFDTIMKELDIPLLGKHDALNDAIMTSMIFLKL 197


>gi|326671136|ref|XP_002663560.2| PREDICTED: hypothetical protein LOC100329499 [Danio rerio]
          Length = 4494

 Score = 37.0 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%)

Query: 60   LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
             K+  + +E++KD P+F  I  E+  +F +   +W+  N    + F++  L+R  KD
Sbjct: 3946 FKVKWLYNEYVKDLPAFKGIVPEYPTWFQQFVLQWLDENEDVSMEFMHGALERDKKD 4002


>gi|227889381|ref|ZP_04007186.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii
           ATCC 33200]
 gi|227850183|gb|EEJ60269.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii
           ATCC 33200]
          Length = 320

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 9/157 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDEF 69
           + D+ETTGL    DRI E+G +  + + +   TF ++   P+  K      KL+GI +  
Sbjct: 35  LIDVETTGLSPYRDRITEMGGLR-VRHGEVVATFSELVKFPDSNKVPAFITKLNGIDEAT 93

Query: 70  LKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +++K  P   +I  ++ +F        + +N  FD+ F+    ++ +   L+ +  +D  
Sbjct: 94  IEEKGLPVQEAI-KKYREFIGSDPI--VGYNVNFDLNFVYDLAEKYHLTVLN-NDYVDVY 149

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            +AR  +P  +++    C  + + I+   +H  L D 
Sbjct: 150 RLARSFYPQEQHNRLLDCM-HRLDIAETQEHRGLDDC 185


>gi|313205456|ref|YP_004044113.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter
           propionicigenes WB4]
 gi|312444772|gb|ADQ81128.1| Exonuclease RNase T and DNA polymerase III [Paludibacter
           propionicigenes WB4]
          Length = 189

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 13/130 (10%)

Query: 10  IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           + FD ETTGL         D  N  R++++  +               + P G     EA
Sbjct: 3   LFFDTETTGLPRDWKAPVSDLNNWPRLVQLAYLFFDSNGNKIAGGDFIIKPEGFTIPTEA 62

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDP 117
            ++HGIT E   ++     ++  +F    NE     +AHN  FD   + AE  R N  D 
Sbjct: 63  SRIHGITTERANQEGKPIQTVLRDFQSMINEAQY-LVAHNMSFDEKIVGAEFLRNNMPDS 121

Query: 118 LDPSRIIDTL 127
           + P R I T+
Sbjct: 122 IAPKRKICTM 131


>gi|240256240|ref|NP_195691.4| exonuclease/ nucleic acid binding [Arabidopsis thaliana]
 gi|332661722|gb|AEE87122.1| exonuclease/ nucleic acid binding protein [Arabidopsis thaliana]
          Length = 255

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSR 122
           GIT   + + PSF  +  +     N +   W  HN + FD   I      I K   +PS 
Sbjct: 69  GITRAKVTNAPSFEDVAEKIHGLLNGR--IWAGHNIRRFDCVRIKEAFAEIGKAAPEPSG 126

Query: 123 IIDTLSIARRKHPSSRNDLN--SLCKRYGITIS-HRS 156
           IID+L +   K      ++   SL   +G+ +  HRS
Sbjct: 127 IIDSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRS 163


>gi|268320049|ref|YP_003293705.1| hypothetical protein FI9785_1583 [Lactobacillus johnsonii FI9785]
 gi|262398424|emb|CAX67438.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
           johnsonii FI9785]
          Length = 320

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 9/157 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDEF 69
           + D+ETTGL    DRI E+G +  + + +   TF ++   P+  K      KL+GI +  
Sbjct: 35  LIDVETTGLSPYRDRITEMGGLR-VRHGEVVATFSELVKFPDSNKVPAFITKLNGIDEAT 93

Query: 70  LKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +++K  P   +I  ++ +F        + +N  FD+ F+    ++ +   L+ +  +D  
Sbjct: 94  IEEKGLPVQEAI-KKYREFIGSDPI--VGYNVNFDLNFVYDLAEKYHLTVLN-NDYVDVY 149

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            +AR  +P  +++    C  + + I+   +H  L D 
Sbjct: 150 RLARSFYPQEQHNRLLDCM-HRLDIAETQEHRGLDDC 185


>gi|331015013|gb|EGH95069.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 222

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 8/115 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP  L +HG
Sbjct: 25  QQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKLSPAVL-IHG 83

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +    +           +F +F    ++  +  +A FD       L R  K+ LD
Sbjct: 84  LAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFD----QHMLARALKESLD 132


>gi|298253384|ref|ZP_06977176.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis 5-1]
 gi|297532779|gb|EFH71665.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis 5-1]
          Length = 261

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG +   D I+    V    + + T      +L    +  +P+A +++G TDE+L
Sbjct: 34  FDTETTGANIGKDAIVSATLVLRNPELAHTGDVVSTWLINPHQPMNPKASEVNGFTDEYL 93

Query: 71  KDKPSFSSIFSEFW----DFFNEQNAEWIAHNAKFDVGFINAELQ 111
           K+         EF          +N   +A+NA FD+  +  +L+
Sbjct: 94  KEHGGEPEEELEFLARAVSMAQAKNIPLLAYNAPFDIAMLRHDLK 138


>gi|153879658|ref|ZP_02004868.1| exonuclease [Beggiatoa sp. PS]
 gi|152063878|gb|EDN65132.1| exonuclease [Beggiatoa sp. PS]
          Length = 65

 Score = 36.6 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
          D ETTGLD  N  I+EI  ++     K  RT    L    +    E + +HGITD+ +K 
Sbjct: 2  DTETTGLDD-NAEIVEIAIID-----KEERTLINQLVKPTQPIPNEVIGIHGITDDEVKK 55

Query: 73 KPSFSSIF 80
           P+F +++
Sbjct: 56 APTFKTVW 63


>gi|90579019|ref|ZP_01234829.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
 gi|90439852|gb|EAS65033.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
          Length = 249

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 13/125 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF----QVFLCPNGRKNSPEALKLHGI 65
           +  D ETTGL++  D II +G V        NR F    Q ++     K   +++ +HGI
Sbjct: 60  VALDFETTGLNANKDDIISVGLVPF----TINRIFCKQSQHWVVKPKAKLDEDSVIIHGI 115

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRII 124
           T   ++  P    I     D    +    + H    +  F++  L+ R+N+    P  ++
Sbjct: 116 THSDVQTAPDIRRILEAVLDSLAGKVV--VVHYKAIERQFMDKALRVRLNEGIQFP--VV 171

Query: 125 DTLSI 129
           DTL++
Sbjct: 172 DTLAL 176


>gi|283782956|ref|YP_003373710.1| exonuclease [Gardnerella vaginalis 409-05]
 gi|283441223|gb|ADB13689.1| exonuclease [Gardnerella vaginalis 409-05]
          Length = 259

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG +   D I+    V    + + T      +L    +  +P+A +++G TDE+L
Sbjct: 32  FDTETTGANIGKDAIVSATLVLRNPELAHTGDVVSTWLINPHQPMNPKASEVNGFTDEYL 91

Query: 71  KDKPSFSSIFSEFW----DFFNEQNAEWIAHNAKFDVGFINAELQ 111
           K+         EF          +N   +A+NA FD+  +  +L+
Sbjct: 92  KEHGGEPEEELEFLARAVSMAQAKNIPLLAYNAPFDIAMLRHDLK 136


>gi|197336459|ref|YP_002157302.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11]
 gi|197317949|gb|ACH67396.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11]
          Length = 238

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 11/187 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGLD+  + II IG V         R  Q +           ++ +HGIT   
Sbjct: 49  VALDFETTGLDANQNSIISIGLVPFTLERIFCRQSQHWFVKAQDSLEENSVVIHGITHSD 108

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128
           L+  P    I  +  D    +    + H  + +  F +  L+  I +  + P  ++DT+ 
Sbjct: 109 LQGAPDLRRILEQVLDALAGKVV--VVHYRRIERDFFDTNLRSLIGEGIVFP--VVDTMQ 164

Query: 129 I-ARRKHPSSRNDLNSLCKRYGITI---SHRSKHG--ALLDSHLLSDVYIKMMVGGSQIN 182
           I    +   ++  +N L  +   +I   + R ++G  +    H L+D      +  +Q+ 
Sbjct: 165 IEGDYQQEQAKGLINWLKGKRPESIRLANTRLRYGLPSYPPHHALTDAIATAELFQAQVR 224

Query: 183 FGFKTNE 189
           + F  N+
Sbjct: 225 YHFSAND 231


>gi|302188448|ref|ZP_07265121.1| exonuclease [Pseudomonas syringae pv. syringae 642]
          Length = 237

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP  L +HG
Sbjct: 40  EQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVL-IHG 98

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           +    +           +F +F    ++  +  +A FD   ++  L+
Sbjct: 99  LAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALK 143


>gi|53714270|ref|YP_100262.1| DNA polymerase III subunit epsilon [Bacteroides fragilis YCH46]
 gi|60682326|ref|YP_212470.1| putative DNA polymerase III subunit epsilon [Bacteroides fragilis
           NCTC 9343]
 gi|253564786|ref|ZP_04842242.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5]
 gi|265766238|ref|ZP_06094279.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
 gi|52217135|dbj|BAD49728.1| DNA polymerase III epsilon chain [Bacteroides fragilis YCH46]
 gi|60493760|emb|CAH08550.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis
           NCTC 9343]
 gi|251946251|gb|EES86628.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5]
 gi|263253906|gb|EEZ25371.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
 gi|301163800|emb|CBW23355.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis
           638R]
          Length = 257

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTG +  +DRI+EI  +++  Y   N   +            E+  +HGI D  
Sbjct: 10  VFFDLETTGTNINSDRIVEICYLKV--YPNGNEESKTLRINPEMPIPAESSAVHGIYDAD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           + D P+F  +     +  + +  +    N+ +FD+  +  E  R   D
Sbjct: 68  VADCPTFKEVAKSIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVD 113


>gi|300865844|ref|ZP_07110589.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300336143|emb|CBN55747.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 476

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
             F+T + RFF EE+KT  N  LL R  PL  R+  E LD+ D  +Q
Sbjct: 430 LAFQTLQRRFFLEEEKTA-NHQLLYRLHPLMRRVALEHLDKLDMEVQ 475


>gi|319441121|ref|ZP_07990277.1| DNA polymerase III subunit epsilon [Corynebacterium variabile DSM
           44702]
          Length = 228

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 15/148 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG D    RI+      L+  + ++R     L   G      A  +HGIT E+ +
Sbjct: 15  FDLETTGPDPLTARIV---TSALITINGSHRDDLEILADPGIPIPEGATAVHGITTEYAR 71

Query: 72  D--KPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +P    + +E  +       + A  I +NA +D+  +         D      + D 
Sbjct: 72  EHGRP-HDEVLAETIERIRRGWSEGATLIIYNAAYDLTVLRTLEPTFTVD----GPVFDP 126

Query: 127 LSI--ARRKHPSSRNDLNSLCKRYGITI 152
           L +  A+ ++      L  +C+ YG+T+
Sbjct: 127 LVVDKAKDRYRKGGRRLTQVCEHYGVTL 154


>gi|213964467|ref|ZP_03392667.1| DNA polymerase III subunit epsilon [Corynebacterium amycolatum
           SK46]
 gi|213952660|gb|EEB64042.1| DNA polymerase III subunit epsilon [Corynebacterium amycolatum
           SK46]
          Length = 226

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 20/128 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FD+ETTG D +  +I+    V L +  K +    + L   G +    A  +HGIT 
Sbjct: 8   RMLAFDLETTGTDPRTCKIVTSALVRLTEQGKDS---TIMLADPGVEIPQAASDVHGITT 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDVGFINAELQRINKDPLDPS 121
           E  K +           D      A W      +A+NA +D+  + ++         DP+
Sbjct: 65  E--KARAEGRPHDEVLADTIAGLKAAWRDGLTVVAYNAAYDLTVLRSQ---------DPN 113

Query: 122 RIIDTLSI 129
             +D L +
Sbjct: 114 FTVDGLVV 121


>gi|328876923|gb|EGG25286.1| hypothetical protein DFA_03535 [Dictyostelium fasciculatum]
          Length = 369

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 26/147 (17%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQVFLCPNGRKNSPEALK 61
           K+  +VFD ETTGL+ + D+IIEI  + +L+    Y K   T  +         S E+  
Sbjct: 140 KLVILVFDTETTGLEFE-DQIIEITFINILNGDSFYGKVKPTVPL---------SSESYC 189

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKD-- 116
            HGI+ + L +   + S+  +   FF +        IAHN  FD      +L ++ KD  
Sbjct: 190 AHGISLKELDNCLEWESLQGKLDSFFQQYIDHKIVIIAHNVTFD----RYKLWKMVKDQV 245

Query: 117 ---PLDPSRIIDTLSIARRKHPSSRND 140
              P D    I+++ I     P  + D
Sbjct: 246 HCIPFDKIIFINSIEIFLSFGPFKKKD 272


>gi|153830906|ref|ZP_01983573.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|229515666|ref|ZP_04405125.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|148873606|gb|EDL71741.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|229347435|gb|EEO12395.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
          Length = 236

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF----QVFLCPNGRKNSPEALKLHGI 65
           +  D ETTGL+++ D I+ IG V       T R F    + +L    +    E++  HGI
Sbjct: 48  VALDFETTGLNAEQDAIVSIGLVPF----TTQRIFLNQARYWLVKPSQPLEEESIVFHGI 103

Query: 66  TDEFLKDKPSFSSIFSEFWDFFN 88
           T   L+   +   +  E  +  N
Sbjct: 104 THSELQYAQAPEQVLKELLEALN 126


>gi|89072943|ref|ZP_01159490.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
 gi|89051161|gb|EAR56617.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
          Length = 249

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 13/125 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF----QVFLCPNGRKNSPEALKLHGI 65
           +  D ETTGL++  D II +G V        NR F    Q ++     K   +++ +HGI
Sbjct: 60  VALDFETTGLNANKDDIISVGLVPF----NINRIFCKQSQHWVVKPKAKLDEDSVIIHGI 115

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRII 124
           T   ++  P    I     D    +    + H    +  F++  L+ R+N+    P  ++
Sbjct: 116 THSDVQTAPDIRRILEAVLDSLAGKVV--VVHYKAIERQFMDKALRVRLNEGIQFP--VV 171

Query: 125 DTLSI 129
           DTL++
Sbjct: 172 DTLAL 176


>gi|237785839|ref|YP_002906544.1| DNA polymerase III subunit epsilon [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758751|gb|ACR18001.1| DNA polymerase III, epsilon subunit [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 236

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 13/149 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTG +    RI+    V +   S  +      L   G +    A ++HGI+ E+
Sbjct: 19  LSFDLETTGTNPLQARIVTSALVSIHGGSANSTE---LLADPGIEIPESASQIHGISTEY 75

Query: 70  LKD--KPSFSSIFSEFWDFFN--EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            ++  +P    +       ++  E+    I  NA +D+      L+ +    +    + D
Sbjct: 76  AREHGEPHDDVLHKTIRAIYDGWERGQTLIVFNAAYDLTI----LRHLEPSFVCSGLVFD 131

Query: 126 TLSIARRKHP--SSRNDLNSLCKRYGITI 152
            L + R   P  +    L +L KRYGI +
Sbjct: 132 PLVMGRALEPQRTGPRKLGTLVKRYGIQL 160


>gi|160943710|ref|ZP_02090941.1| hypothetical protein FAEPRAM212_01204 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444884|gb|EDP21887.1| hypothetical protein FAEPRAM212_01204 [Faecalibacterium prausnitzii
           M21/2]
          Length = 330

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 19/155 (12%)

Query: 26  IIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFW 84
           I+EIGAV++ + +    TF + L P   RK      K+ G+T   L            F 
Sbjct: 34  IVEIGAVKIDEDANVLDTFSIHLRPRIFRKLQHHIAKVTGLTQADLDRGEPIVQGLRRF- 92

Query: 85  DFFNEQNAEWIAHNAKF------DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138
                   +W   +A+F      DV  +   L   N D   P+   D   +  R+HP   
Sbjct: 93  -------MQWCGPDAEFAEWGLDDVPVLKQNLFLCNLDESRPTVWYDLQQVFLREHPRKE 145

Query: 139 ND---LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            +   L S+  R G+ +  R  H AL D+   +DV
Sbjct: 146 GEGMTLESVVTRMGVPM-ERPFHDALSDTLYTADV 179


>gi|293372861|ref|ZP_06619235.1| exonuclease [Bacteroides ovatus SD CMC 3f]
 gi|292632150|gb|EFF50754.1| exonuclease [Bacteroides ovatus SD CMC 3f]
          Length = 266

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDEFL 70
          FD+ETTG +   DRI+EI  +++  Y   N   +  L  N   + PEA   +HGI D  +
Sbjct: 19 FDLETTGTNINTDRIVEICYLKV--YPNGNEEAKT-LRINPEMHIPEASSAIHGIYDADV 75

Query: 71 KDKPSFSSI 79
           D P+F  +
Sbjct: 76 VDCPTFKEV 84


>gi|156346891|ref|XP_001621564.1| hypothetical protein NEMVEDRAFT_v1g248663 [Nematostella vectensis]
 gi|156207642|gb|EDO29464.1| predicted protein [Nematostella vectensis]
          Length = 460

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 36/196 (18%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FD ETTGLD+ ND II++           +     ++ P G  +   A ++HGI+  F
Sbjct: 157 VMFDTETTGLDTSNDDIIQLACAS----ENGDNLHSRYMFPRGSIDLG-ATRVHGISKAF 211

Query: 70  L-------KDKPSFSSIFS------EFWDFFNEQNAE------WIAHNA-KFDVGFINAE 109
           +       KD    + + S      EF  F     ++       +AH    FD   +   
Sbjct: 212 IDGSRVLVKDGRPLADVASQKDGLREFIAFLKMHQSQSPKRLCLVAHYGDSFDFRLLINC 271

Query: 110 LQR---INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS--------KH 158
           L+R   +N+     S ++D++ + R      ++  +S  K+  ++  H           H
Sbjct: 272 LKRHNLMNEFISTGSVLLDSVKVVRASKKQEKSPFDSSFKKESLSALHGHLFGVPIDRPH 331

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+  LS V +K+
Sbjct: 332 DAQADACALSKVLMKI 347


>gi|255010437|ref|ZP_05282563.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis
           3_1_12]
 gi|313148241|ref|ZP_07810434.1| DNA Pol III epsilon chain [Bacteroides fragilis 3_1_12]
 gi|313137008|gb|EFR54368.1| DNA Pol III epsilon chain [Bacteroides fragilis 3_1_12]
          Length = 257

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTG +  +DRI+EI  +++  Y   N   +            E+  +HGI D  
Sbjct: 10  VFFDLETTGTNINSDRIVEICYLKV--YPNGNEESKTLRINPEMPIPAESSAVHGIFDAD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           + D P+F  +     +  + +  +    N+ +FD+  +  E  R   D
Sbjct: 68  VADCPTFKEVAKSIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVD 113


>gi|213967758|ref|ZP_03395905.1| exonuclease [Pseudomonas syringae pv. tomato T1]
 gi|301382395|ref|ZP_07230813.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13]
 gi|302061212|ref|ZP_07252753.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40]
 gi|302132416|ref|ZP_07258406.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213927534|gb|EEB61082.1| exonuclease [Pseudomonas syringae pv. tomato T1]
          Length = 237

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 8/115 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP  L +HG
Sbjct: 40  QQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKLSPAVL-IHG 98

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +    +           +F +F    ++  +  +A FD       L R  K+ LD
Sbjct: 99  LAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFD----QHMLARALKESLD 147


>gi|115376299|ref|ZP_01463539.1| ATP-dependent DNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|115366724|gb|EAU65719.1| ATP-dependent DNA helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 935

 Score = 36.2 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPL 118
           +L GI D  L  KP F S   E      E    W  +AHNA F+ GF+   L  I    L
Sbjct: 14  RLTGIEDAMLAGKPRFGSDLDEL----REALTGWTVVAHNAPFEKGFLPKLLGPIRAPVL 69

Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKH 158
           D   ++  L      HP  S + L ++ +  G  +  RS H
Sbjct: 70  DSCELLHYL------HPELSSHSLEAMMRWAG--LKPRSTH 102


>gi|289674377|ref|ZP_06495267.1| exonuclease [Pseudomonas syringae pv. syringae FF5]
          Length = 237

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP  L +HG
Sbjct: 40  EQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVL-IHG 98

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           +    +           +F +F    ++  +  +A FD   ++  L+
Sbjct: 99  LAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALK 143


>gi|3080450|emb|CAA18767.1| hypothetical protein [Arabidopsis thaliana]
 gi|7270965|emb|CAB80644.1| hypothetical protein [Arabidopsis thaliana]
          Length = 236

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSR 122
           GIT   + + PSF  +  +     N +   W  HN + FD   I      I K   +PS 
Sbjct: 69  GITRAKVTNAPSFEDVAEKIHGLLNGRI--WAGHNIRRFDCVRIKEAFAEIGKAAPEPSG 126

Query: 123 IIDTLSIARRKHPSSRNDLN--SLCKRYGITIS-HRS 156
           IID+L +   K      ++   SL   +G+ +  HRS
Sbjct: 127 IIDSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRS 163


>gi|330898819|gb|EGH30238.1| exonuclease [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 237

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP  L +HG
Sbjct: 40  EQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVL-IHG 98

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           +    +           +F +F    ++  +  +A FD   ++  L+
Sbjct: 99  LAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALK 143


>gi|330938574|gb|EGH42148.1| exonuclease [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 237

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP  L +HG
Sbjct: 40  EQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVL-IHG 98

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           +    +           +F +F    ++  +  +A FD   ++  L+
Sbjct: 99  LAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALK 143


>gi|28867700|ref|NP_790319.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28850935|gb|AAO54014.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 237

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 8/115 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP  L +HG
Sbjct: 40  QQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKLSPAVL-IHG 98

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +    +           +F +F    ++  +  +A FD       L R  K+ LD
Sbjct: 99  LAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFD----QHMLARALKESLD 147


>gi|261369077|ref|ZP_05981960.1| putative DNA polymerase III, epsilon subunit [Subdoligranulum
           variabile DSM 15176]
 gi|282568762|gb|EFB74297.1| putative DNA polymerase III, epsilon subunit [Subdoligranulum
           variabile DSM 15176]
          Length = 318

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 9/169 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIETTGLD   D I++   V +LD          ++ P   ++ PEA +++ IT E 
Sbjct: 120 VSIDIETTGLDFNQDEILQ---VSILDIDTGEVLLDSYVKPYFTEDWPEARRVNHITKEM 176

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL--DPSRIIDT 126
           + + P    +          Q    + +N   FD GF+       N + +  D S I   
Sbjct: 177 VCNAPYIYELLPRLNQVL-AQVKTIVGYNFTGFDNGFLTRYGASFNDETIVEDLSNIFAA 235

Query: 127 L--SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    + +       +L++    +G      + H +L D    +  Y K
Sbjct: 236 IYGEFSPKHGDFKFKNLSTCADYFGYDWGEETAHNSLADCRATAFCYKK 284


>gi|256545132|ref|ZP_05472498.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399173|gb|EEU12784.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
          Length = 305

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 25/109 (22%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTGLD K D+++ +G +   DY K     + ++     KN  E +KL  I  E +
Sbjct: 19  ILDIETTGLDPKIDKLVVLGLI-YFDYKKN----KFYIDQYFSKNDKEEVKLLKIYKEKI 73

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPL 118
                              QN + I +N   FD+ F+N  L    ++P+
Sbjct: 74  -------------------QNKKLITYNGDIFDLPFLNIRLIENKEEPI 103


>gi|326803355|ref|YP_004321173.1| putative DNA polymerase III, epsilon subunit [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650663|gb|AEA00846.1| putative DNA polymerase III, epsilon subunit [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 173

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 18/159 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTGL   + +II+I AV   D  K    F   + P+ R    +  +L GI+D  
Sbjct: 14  VAFDLETTGL-GFSSKIIQISAVHFRD-GKEIGAFDQLVNPD-RPIPAKITQLTGISDAD 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--IDT 126
           +   P+   +  +F  F   ++     +N+ KFD+  + A         +D S +  +D 
Sbjct: 71  VYLSPTIDQVIHDFMAFI--KDLPLAGYNSKKFDIPMLRANTG------IDLSGLPHMDV 122

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           L +AR     + N  L ++   YGI       H +L DS
Sbjct: 123 LEMARLSPIRTPNYKLTTVKAHYGI---QNRAHDSLNDS 158


>gi|66047927|ref|YP_237768.1| exonuclease [Pseudomonas syringae pv. syringae B728a]
 gi|63258634|gb|AAY39730.1| Exonuclease [Pseudomonas syringae pv. syringae B728a]
          Length = 237

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP  L +HG
Sbjct: 40  EQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVL-IHG 98

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           +    +           +F +F    ++  +  +A FD   ++  L+
Sbjct: 99  LAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALK 143


>gi|304383117|ref|ZP_07365592.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii
           DSM 16973]
 gi|304335803|gb|EFM02058.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii
           DSM 16973]
          Length = 889

 Score = 36.2 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 18/157 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGLD   D I+++ A+++ +       +F VF+    R        L  I + 
Sbjct: 504 VVFDTETTGLDVFADDIVQLAAIKVRNGKVVEGSSFNVFI----RTEREIPAMLGDIPNP 559

Query: 69  FLKDKP-----SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            +++       S    F++F D+  +     + HN ++D   +   L R     ++  + 
Sbjct: 560 IIEEMKHHECLSPEEAFAQFMDYVADDAV--LGHNVEYDFHILLYNLLRHAPQWVERWKA 617

Query: 124 I---DTLSIARRKHPSSRN-DLNSLCKRYGI--TISH 154
           +   D+L + R  HP  ++  L  L +R G+  T SH
Sbjct: 618 VERFDSLKLIRLLHPRQKSYKLKHLLERLGLEGTNSH 654


>gi|294795062|ref|ZP_06760197.1| exonuclease [Veillonella sp. 3_1_44]
 gi|294454424|gb|EFG22798.1| exonuclease [Veillonella sp. 3_1_44]
          Length = 209

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 14/121 (11%)

Query: 58  EALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRI 113
           E +++HGI   + L +K      F E W+   E + +    +AHNAKFD+  + A L   
Sbjct: 50  ECIEIHGIQPKDVLHEK-----TFDELWNAIYENHLKGNIMVAHNAKFDMNVLRATLDYY 104

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            K P        T+ ++R   P   N  LN++    G+   H   H AL D+   + V +
Sbjct: 105 -KIPWPELDYACTVKLSRAVWPDLVNHKLNTMAAYIGVEFKH---HYALDDAETCAKVVL 160

Query: 173 K 173
           +
Sbjct: 161 E 161


>gi|260774372|ref|ZP_05883286.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260610499|gb|EEX35704.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 215

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 81/178 (45%), Gaps = 9/178 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
           K   I  D ETT LD +   ++ I A +++D    T++ F + L      +S  ++++H 
Sbjct: 27  KTELISLDCETTSLDPQRAELVSIAATKIIDNRILTSQAFHIRLAAPPSLDS-GSVRIHQ 85

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +  + L    S      +   F    N   + ++ ++D   ++   ++    PL P+ +I
Sbjct: 86  LRHQDLAYGLSEPQALQQLLAFIG--NRPLVGYHIRYDKTILDIACRKQLGFPL-PNPLI 142

Query: 125 DTLSIAR----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +   +      ++ P++  DL+     + + +  + KH AL D+   + V++++  GG
Sbjct: 143 EVSQLYHQQLEKQLPNAYFDLSLAAICHHLDLPMQDKHDALQDAITAALVFVRLSKGG 200


>gi|332142368|ref|YP_004428106.1| DNA-directed DNA polymerase I [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552390|gb|AEA99108.1| DNA-directed DNA polymerase I [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 289

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 27/155 (17%)

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154
           I  N KFD G I AE     K    PS   DT+++A+   P  ++DL+SL KR  +  + 
Sbjct: 73  IGQNTKFD-GLILAE-----KHNFIPSYYCDTMAMAKGLWPHHKSDLDSLTKR--LFPND 124

Query: 155 RSKHGALLDSHLLSDVYIKMMVGGSQ---INFGFKTNEDRF--FKEEKKTVPN-----IS 204
           +SKH            Y  +   G++   I +G + ++  +  FK+ ++  P      I 
Sbjct: 125 KSKHKGTELESFKGKTYEDIEADGTEQILIQYGVQDSDITYESFKQMEQWYPKPEMDIID 184

Query: 205 LLKR---------DKPLFTRITKEELDEHDKTIQT 230
           +  R         D  L  R+  E   E +  IQT
Sbjct: 185 MTVRMFCDPVFVLDTSLMDRVAVEATKEKESVIQT 219


>gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38]
 gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38]
          Length = 950

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 32/139 (23%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD ETTG+D+ N         EL+  S +    + F  P                  F
Sbjct: 378 VCFDTETTGIDALN--------AELVGMSFSFEKGKGFYVP------------------F 411

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +D+    ++  +F  FF  +N E I  N K+D+  ++      N +     ++ DT+  
Sbjct: 412 PEDQEEAQTLIEKFRPFFENENIEKIGQNMKYDLKILS------NYNMQVKGKLFDTMIA 465

Query: 130 ARRKHPSSRNDLNSLCKRY 148
               +P  R++++ L + Y
Sbjct: 466 HYLINPDMRHNMDVLSETY 484


>gi|306835906|ref|ZP_07468899.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49726]
 gi|304568180|gb|EFM43752.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49726]
          Length = 233

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 31/162 (19%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL--LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R + FD+ETT  + K+ RI+    V +   D  K        L   G +    A  +HGI
Sbjct: 17  RMLAFDLETTSANPKDARIVTSALVRIDGRDVQKVEH-----LADPGIEIPQAATDVHGI 71

Query: 66  T-----------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--R 112
           T           +E LKD  +  +I S +     E     I +NA FD+  + +      
Sbjct: 72  TTEKAQAEGRPHEEVLKD--TVDAIKSAW-----EDGLTLIVYNAAFDLTVLRSLTGDFT 124

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154
           +     DP  +ID +S   RK    +  L ++C+ YG+ + +
Sbjct: 125 VTGPVFDP-YVIDRVSDKWRK---GKRTLGAVCEHYGVELGN 162


>gi|330970909|gb|EGH70975.1| exonuclease [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 237

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP  L +HG
Sbjct: 40  EQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVL-IHG 98

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           +    +           +F +F    ++  +  +A FD   ++  L+
Sbjct: 99  LAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALK 143


>gi|145294367|ref|YP_001137188.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum R]
 gi|140844287|dbj|BAF53286.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 360

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +   I+++G+     R++ I  V L    +   TF   L     K  P    LHG+T+E 
Sbjct: 28  VSVTIQSSGIHPSTSRMVTIDLVTLSPTLEPVETFHAVL---DSKTDPGPFHLHGVTEEE 84

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
                 F  I        + +    + HN+    GFI +E +R   D
Sbjct: 85  FAGAKKFGQILKSLDRLIDGRT--LLIHNSARTWGFIVSEAKRAMND 129


>gi|227487575|ref|ZP_03917891.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092557|gb|EEI27869.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 310

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGITD 67
           +  D ET   + +      +G        K   T+   L P+   +  +P  + +HGIT 
Sbjct: 5   VSIDFETA--NEQRRSACAVGMARFDAEGKLADTYYTLLHPHPDVDYFNPVNVWVHGITQ 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + D P +S +  +   F  E+    +AHN  FD G++ ++L  +   P   +R   T+
Sbjct: 63  DDVHDAPQWSDVADDVALFIGERPI--VAHNMAFD-GYVLSDLDSLYGAPPLENRRFCTV 119

Query: 128 SIARR 132
            +AR+
Sbjct: 120 RLARK 124


>gi|269926118|ref|YP_003322741.1| DNA polymerase III, epsilon subunit [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789778|gb|ACZ41919.1| DNA polymerase III, epsilon subunit [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 960

 Score = 36.2 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 13/163 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+E TG D + D II+IGAV+        R +   + P   K      +L GI    
Sbjct: 8   VALDLEMTGHDPEQDEIIQIGAVKFTQTRVLGR-WGTLVRPK-VKLPFRIARLTGINPND 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P F ++  +   F  +     + H+   D+ F+  +   ++    +PS  +DT  +
Sbjct: 66  LNKAPVFDAVKDKLRSFVGDHPI--VGHSIGNDLSFLAKQGLALD----NPS--LDTWEL 117

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           A    PS +   L  +    G+++ +   H AL D+ +   V+
Sbjct: 118 AMLLMPSLNAYSLQGVASALGVSVDNH--HDALADAEITRQVF 158


>gi|319942625|ref|ZP_08016933.1| hypothetical protein HMPREF9464_02152 [Sutterella wadsworthensis
           3_1_45B]
 gi|319803804|gb|EFW00736.1| hypothetical protein HMPREF9464_02152 [Sutterella wadsworthensis
           3_1_45B]
          Length = 502

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 12  FDIETTGLDSKNDRIIEI-GAVELLDYSK-TNRTFQVFLC--PNGRKNSPEALKLHGITD 67
           +D ET G+D + DR  +  G    LD+S  +  T ++F C     +  +PE+  L GIT 
Sbjct: 13  YDYETFGVDPRKDRPAQFAGRRTRLDFSPLSGDTGEIFYCRPTEDQLPNPESCLLTGITP 72

Query: 68  EFLKDKPSFSSIFSEF-WDFFNEQNAEWIAHN 98
           ++  +K    S F++  W+  N      I +N
Sbjct: 73  QYCAEKGVCESEFADLIWERLNTPGTVSIGYN 104


>gi|297242761|ref|ZP_06926699.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis AMD]
 gi|296888972|gb|EFH27706.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis AMD]
          Length = 261

 Score = 35.8 bits (81), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           FD ETTG +   D I+    V    EL        T+   + P+   N P+A +++G TD
Sbjct: 34  FDTETTGANIGKDAIVSATLVLRNPELAHAGDVVSTW--LINPHQPMN-PKASEVNGFTD 90

Query: 68  EFLKDKPSFSSIFSEFW----DFFNEQNAEWIAHNAKFDVGFINAELQR 112
           E+L++         EF          +N   +A+NA FD+  +  +L+R
Sbjct: 91  EYLQEHGGEPEEELEFLARAVSIAQAKNIPLLAYNAPFDIAMLRHDLKR 139


>gi|251780447|ref|ZP_04823367.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243084762|gb|EES50652.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 204

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 6/115 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ + FD ETT +  K   I ++  + +   SK   T          + +P A ++HG +
Sbjct: 1   MKLLFFDTETTSI--KPGSICQLSYITVDASSKPQITTGKNFFFTVDEMNPSAQEIHGFS 58

Query: 67  DE---FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            E    L D   F  +  EF+  F E +   I HN  FD+ F+  EL  + +D L
Sbjct: 59  LEKLYELSDGQYFEDLVPEFFKDFIEADF-LIGHNVNFDIRFLKHELSLLGEDFL 112


>gi|308235255|ref|ZP_07665992.1| exonuclease [Gardnerella vaginalis ATCC 14018]
 gi|311115068|ref|YP_003986289.1| hypothetical protein HMPREF0421_21184 [Gardnerella vaginalis ATCC
           14019]
 gi|310946562|gb|ADP39266.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019]
          Length = 256

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG     D I     V     +KT N     +L    +  +P+A +++G TDEFL
Sbjct: 32  FDTETTGAILGEDSICSATLVLRNPQNKTHNDVIATWLINPHKPINPKASQVNGFTDEFL 91

Query: 71  KD---KPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           ++   +P+      +        +N   +A+NA FDV  +  +L++
Sbjct: 92  QENGGEPTAEIEALAAAVSLAQSKNIPLLAYNAPFDVEMLRHDLKK 137


>gi|189463384|ref|ZP_03012169.1| hypothetical protein BACCOP_04103 [Bacteroides coprocola DSM 17136]
 gi|189429813|gb|EDU98797.1| hypothetical protein BACCOP_04103 [Bacteroides coprocola DSM 17136]
          Length = 164

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HG+T +     P+F  ++ E            +AHN+ FD G + A  Q  N +  D 
Sbjct: 53  QVHGLTFQDTACAPTFPEVWKEIDPII--AGLPLVAHNSPFDEGCLKAAFQAYNMEYPDY 110

Query: 121 SRIIDTLSIARRKHPSS--RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +    T   +RR    S   + L ++  + G  +SH   H AL D+   + + I ++
Sbjct: 111 T-FHCTCRASRRTFGKSLPNHQLQTVALKCGYDLSHH--HHALCDAEACAQIAINIL 164


>gi|323466912|gb|ADX70599.1| DNA polymerase III alpha chain [Lactobacillus helveticus H10]
          Length = 177

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++H IT + +K+ P+ + ++ +    + +      AHN +FD   +   L R N +  +
Sbjct: 50  IQVHQITADDVKNAPTMAEVWPKIKGLY-QPGMLVAAHNTRFDTNVMRQSLARYNIE--E 106

Query: 120 PSR-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P   +IDTL+ ++   P   N  L+++     + + H   H AL DS   + + I
Sbjct: 107 PHYLVIDTLATSKLFEPELPNHKLDTVSDALDVELWHH--HNALSDSEACAGILI 159


>gi|168180760|ref|ZP_02615424.1| exonuclease family protein [Clostridium botulinum NCTC 2916]
 gi|182668520|gb|EDT80499.1| exonuclease family protein [Clostridium botulinum NCTC 2916]
          Length = 253

 Score = 35.8 bits (81), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 105/242 (43%), Gaps = 19/242 (7%)

Query: 7   MRKIVFDIE-TTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEA 59
           M  I+FD+E   G +++ +      II+IGA++L +   T  TF   + P    N +P  
Sbjct: 1   MNYIIFDLEFNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSNLNPFV 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPL 118
             L  +T + L     F  ++ +F +F N+ +N   I         F N     ++ + +
Sbjct: 61  KNLTNLTMDSLNKANPFREVYKDFLEFLNKNRNIFCIWGMTDMKELFRNIVYYELDTESM 120

Query: 119 DPSRIIDTLSIARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P   I+  +   +   +P S N  L++  + + IT  +   H A  D+   ++V+ K+ 
Sbjct: 121 -PKEYINVQAYTGKYLNYPKSINVGLSNAVELFHIT-KNNDFHNAFNDAFYTAEVFKKIY 178

Query: 176 VGGSQINFGFKTNEDRFF--KEEKKTVPNISLLKRDKPLFTRITKEELDEHD--KTIQTL 231
               +      TN    +  K  K  +  +SL K+ + +F   TK  L E D  K   T+
Sbjct: 179 SEKIKTKIYKPTNNSTTYRNKNTKTRIDTVSLFKQFEKMFN--TKLTLQEQDMIKLAYTM 236

Query: 232 GK 233
           GK
Sbjct: 237 GK 238


>gi|330837024|ref|YP_004411665.1| Exodeoxyribonuclease I [Spirochaeta coccoides DSM 17374]
 gi|329748927|gb|AEC02283.1| Exodeoxyribonuclease I [Spirochaeta coccoides DSM 17374]
          Length = 474

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 36/192 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSPEALKLHGIT--- 66
           +D+ET GL+   DRI++   V   +D +   +   ++  P       P A  + GIT   
Sbjct: 10  YDLETFGLNPYYDRIVQFAGVRTDMDLTPVGQPILLYARPTIDYLPDPLACLVTGITPQE 69

Query: 67  --DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL----- 118
             ++ L++    ++I  E      ++N   +  N+ +FD  FI   L R   DP      
Sbjct: 70  AMEKGLRENDFANAILKE----MGQKNTCSVGFNSIRFDDEFIRNLLYRNLIDPYRREWA 125

Query: 119 DPSRIIDTLSIARRKH---------PSSRNDLNSLCKRYGIT----ISHRSKHGALLDSH 165
           D +   D L + R  H         P S+++ N + K   +T    ISH   H A     
Sbjct: 126 DGNSRWDVLDLIRAAHDLRPDSLAWPPSKDNGNPVFKLTELTTANNISHEHAHDA----- 180

Query: 166 LLSDVYIKMMVG 177
            LSDVY  + + 
Sbjct: 181 -LSDVYATLAIS 191


>gi|260909505|ref|ZP_05916208.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636353|gb|EEX54340.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 900

 Score = 35.8 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 17/136 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGL+   D I++I AV++          F VF+    +   P    L  I + 
Sbjct: 518 VVFDTETTGLNVFEDDIVQIAAVKMRASCVVEGSAFNVFI----KTERPIPAMLGDIPNP 573

Query: 69  FLKDKPSFSSI-----FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLD 119
            + +    + +       +F  +  +  +  +AHNA FD   +   LQR    I+     
Sbjct: 574 IVAELQRNTCLPAAQALQDFMQYVGD--SVLLAHNADFDYNILRFNLQRYCPSIDLHATH 631

Query: 120 PSRIIDTLSIARRKHP 135
           P+   D+L I R   P
Sbjct: 632 PT-YFDSLKIIRLLQP 646


>gi|51245369|ref|YP_065253.1| hypothetical protein DP1517 [Desulfotalea psychrophila LSv54]
 gi|50876406|emb|CAG36246.1| unknown protein [Desulfotalea psychrophila LSv54]
          Length = 188

 Score = 35.8 bits (81), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP----NGRKNSPE---ALKL 62
           ++ DIETT    +   I+E+G V L   S   +     LC      GR   P      K 
Sbjct: 6   LIIDIETTNFLKEGGSIVEVGMVALDLESGVTKIIFDSLCREKILTGRHREPPFGWIFKN 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
             +T E +++ P F S+ +E     N       A+N  FD  F+ +
Sbjct: 66  SDLTVEEVREAPDFDSLRAEIQSIINAYPLGATAYNRSFDFDFLES 111


>gi|148379717|ref|YP_001254258.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. ATCC 3502]
 gi|153933415|ref|YP_001384014.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. ATCC 19397]
 gi|153934824|ref|YP_001387556.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. Hall]
 gi|148289201|emb|CAL83296.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502]
 gi|152929459|gb|ABS34959.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. ATCC 19397]
 gi|152930738|gb|ABS36237.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. Hall]
 gi|322805994|emb|CBZ03561.1| DNA polymerase III epsilon subunit [Clostridium botulinum H04402
           065]
          Length = 195

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 25/134 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ----------VFLCPNGRKNS 56
           M+KI  D ETTGL        E G +  L Y   +  F+           F   +  + S
Sbjct: 1   MKKIFIDTETTGL--------EPGEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEES 52

Query: 57  PEALKLHGITDEFLK---DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
            EA+  HG + E LK       F  + SE     + ++  +IAHN  FD  F+ AE  R+
Sbjct: 53  AEAI--HGFSVEKLKILSKGKKFKDLASEISS--DLKDGIFIAHNVNFDRKFVTAEFNRL 108

Query: 114 NKDPLDPSRIIDTL 127
           N     P     T+
Sbjct: 109 NDMNWIPKEFFCTM 122


>gi|311694144|gb|ADP97017.1| DNA polymerase III, epsilon subunit [marine bacterium HP15]
          Length = 235

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 8/152 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D+ETTGL+   D +I IGAV +          F + L      +  E + +HGI 
Sbjct: 40  RLIVLDLETTGLNPSKDEVIAIGAVAIRGGIIHLGDQFDLILR-RPELDIRETVLIHGIG 98

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E L              ++ N      +A+++ FD  F+   L +       P   +D 
Sbjct: 99  PEALTQGHEIEDALLYLLEWMNGDPI--LAYHSAFDQKFLEKTL-KAQLGYTQPHTWMDV 155

Query: 127 LSIARRKHPSSRN---DLNSLCKRYGITISHR 155
             +     P+++     L++    +G+ +S R
Sbjct: 156 ADLMPAFFPNTKTGGKGLDNWADYFGLEVSER 187


>gi|168180335|ref|ZP_02614999.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           NCTC 2916]
 gi|226949002|ref|YP_002804093.1| putative DNA polymerase III subunit epsilon [Clostridium botulinum
           A2 str. Kyoto]
 gi|182668792|gb|EDT80770.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           NCTC 2916]
 gi|226843902|gb|ACO86568.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A2 str. Kyoto]
          Length = 195

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 25/134 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ----------VFLCPNGRKNS 56
           M+KI  D ETTGL        E G +  L Y   +  F+           F   +  + S
Sbjct: 1   MKKIFIDTETTGL--------EPGEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEES 52

Query: 57  PEALKLHGITDEFLK---DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
            EA+  HG + E LK       F  + SE     + ++  +IAHN  FD  F+ AE  R+
Sbjct: 53  AEAI--HGFSVEKLKILSKGKKFKDLASEISS--DLKDGIFIAHNVNFDRKFVTAEFNRL 108

Query: 114 NKDPLDPSRIIDTL 127
           N     P     T+
Sbjct: 109 NDMNWIPKEFFCTM 122


>gi|312963467|ref|ZP_07777949.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
 gi|311282273|gb|EFQ60872.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
          Length = 235

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 4/105 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D+ET+GL+   D+++ IGAV + D +   ++ F+  L     K SP  L +HG+ 
Sbjct: 40  RWVVVDLETSGLNLNRDQVLSIGAVVIEDGAVDFSQLFERTLQRTDTKLSPSVL-IHGLG 98

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
              +           +F +F    ++  +A +A FD   +   L+
Sbjct: 99  PSAIAAGSDPVEALLDFMEFVG--DSPLLAFHAPFDQHMLGRALK 141


>gi|329121817|ref|ZP_08250433.1| exonuclease [Dialister micraerophilus DSM 19965]
 gi|327468090|gb|EGF13578.1| exonuclease [Dialister micraerophilus DSM 19965]
          Length = 195

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 14/161 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+    D ET      N     +G V + D SK    +   + P       E ++++GI 
Sbjct: 1   MKYTAIDFETAFWGKGN--ACSLGIV-ISDGSKLTDEWYDLIRPVHLNFDEECIRVNGIH 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +KDKP F   +++     N   A   AHNA FD G +   + R     ++     DT
Sbjct: 58  PEDVKDKPEFPYYWNKISGLLNGTVA--FAHNAPFDFGVLANTIDRYELPDIN-FYWGDT 114

Query: 127 LSIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           + I+R   +K P+ +  LN++ +      +H   H AL D+
Sbjct: 115 VEISRILWKKLPNHK--LNTVAEFLNFEFNH---HQALDDA 150


>gi|188026358|ref|ZP_02961799.2| hypothetical protein PROSTU_03865 [Providencia stuartii ATCC
          25827]
 gi|188020096|gb|EDU58136.1| hypothetical protein PROSTU_03865 [Providencia stuartii ATCC
          25827]
          Length = 181

 Score = 35.4 bits (80), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          M++KN+   I  D+E TGLD + DRIIEI  +
Sbjct: 1  MMQKNENNLIWIDLEMTGLDPERDRIIEIATI 32


>gi|295704398|ref|YP_003597473.1| exonuclease family protein [Bacillus megaterium DSM 319]
 gi|294802057|gb|ADF39123.1| exonuclease family protein [Bacillus megaterium DSM 319]
          Length = 197

 Score = 35.4 bits (80), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 13/103 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTN-------RTFQVFLCPNGRKNSPEALKLH 63
           V D+ETTGL ++   IIE+ A+ ++ Y  +          ++ F  P+     P    L 
Sbjct: 11  VLDVETTGLSAQTCDIIEL-AIAVVSYDSSTGEIIDIVEEYEEFNMPS-TPIFPYITNLT 68

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           GIT+E +K+K    ++  +  +      +  IAHNA FD  F+
Sbjct: 69  GITNEMVKNK----TLDDKKVESLLTSVSAIIAHNASFDRSFL 107


>gi|71281793|ref|YP_271594.1| exonuclase [Colwellia psychrerythraea 34H]
 gi|71147533|gb|AAZ28006.1| exonuclase [Colwellia psychrerythraea 34H]
          Length = 228

 Score = 35.4 bits (80), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 5/132 (3%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +K+  +  D ETTGL++K D+++ +G + L     + +T    +     +     + +
Sbjct: 38  RIDKVEILAVDFETTGLNAKQDKLLSVGFLTLKKQQMSLKTSYHQIIKTKAQLEESNVII 97

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPS 121
           H ITD   +   + + +               + H A+ +  F+  A  +     P+ P 
Sbjct: 98  HHITDSQKEQGQALAIVVEALLKAL--AGKVMLVHFARIERQFLAEACYELYGMAPIFP- 154

Query: 122 RIIDTLSIARRK 133
            +IDTL++A+R+
Sbjct: 155 -MIDTLALAKRR 165


>gi|255034947|ref|YP_003085568.1| Exonuclease RNase T and DNA polymerase III [Dyadobacter
          fermentans DSM 18053]
 gi|254947703|gb|ACT92403.1| Exonuclease RNase T and DNA polymerase III [Dyadobacter
          fermentans DSM 18053]
          Length = 195

 Score = 35.4 bits (80), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGI 65
          M  +V DIE TG +   + II+IGA    D  ++  T+   + P N    S ++ ++HG+
Sbjct: 1  MSFLVLDIEMTGPEPGWNEIIQIGAEFFDDNWRSLGTYLQNVYPENEEAFSVKSEEVHGL 60

Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNA 92
          + + L+D P    +  EF  +  + NA
Sbjct: 61 SLDDLEDAPMIYDVLPEFEKWIKKLNA 87


>gi|317505660|ref|ZP_07963563.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM 15606]
 gi|315663245|gb|EFV03009.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM 15606]
          Length = 901

 Score = 35.4 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 12/108 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +FD ETTGLD  +D I++I AV+L + +        ++L     K  PE L    I +  
Sbjct: 509 IFDTETTGLDVFSDDILQIAAVQLKNGAVVLGSAMSIYL--ESDKEIPEMLG--DIVNPI 564

Query: 70  LKDKP-----SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           ++++      S       F D+   Q    + HNA FD+  +   L R
Sbjct: 565 IEERRHHQLISRQDALQRFVDY--AQGTVLLGHNADFDIHILTNNLLR 610


>gi|213965286|ref|ZP_03393483.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           amycolatum SK46]
 gi|213952138|gb|EEB63523.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           amycolatum SK46]
          Length = 545

 Score = 35.4 bits (80), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDEF 69
            FD+ET   D+ +  II++G   +     T R   +   P G +   EA + +HGIT   
Sbjct: 168 AFDVETANEDTGS--IIQLGVAVVRGGKVTERYSWMCRPPKGLEYFDEANVAIHGITAAD 225

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           +  +PSF    ++F       + + +AHNA+FD
Sbjct: 226 VAGEPSFPEQLAKF--VDVVGDLDVVAHNARFD 256


>gi|254229568|ref|ZP_04922981.1| DNA polymerase III, alpha subunit [Vibrio sp. Ex25]
 gi|151937941|gb|EDN56786.1| DNA polymerase III, alpha subunit [Vibrio sp. Ex25]
          Length = 226

 Score = 35.4 bits (80), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I+ D ETTGL + +  I+E  A+     + +       L         +A  +HGIT+E
Sbjct: 30  AIIIDTETTGLGA-DAEIVEFTAI----CANSGEVIVDELVKPTCSIPADATAIHGITNE 84

Query: 69  FLKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            +KD P F  +FS  F    N +    I +N+ FD   I   L +
Sbjct: 85  DVKDAPDFHLMFSNRFLPLLNGRPI--IIYNSDFDTRLIIQSLDK 127


>gi|149186517|ref|ZP_01864829.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21]
 gi|148829744|gb|EDL48183.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21]
          Length = 297

 Score = 35.4 bits (80), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 12/103 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHGI 65
           + D ETTGL ++ D IIE+ A+ L            F     L   G++  P+   + G+
Sbjct: 51  IVDTETTGLSAETDVIIEL-AIMLCFVGDNGEVIGHFGPVSWLQDPGQELDPKITLVTGL 109

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFIN 107
             + LK++    ++     D      A+ IA HNAKFD GFI 
Sbjct: 110 GAQHLKNQKINDTVARGLLD-----RADLIAAHNAKFDAGFIE 147


>gi|303240250|ref|ZP_07326769.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
          cellulolyticus CD2]
 gi|302592160|gb|EFL61889.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
          cellulolyticus CD2]
          Length = 211

 Score = 35.4 bits (80), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 12/97 (12%)

Query: 7  MRKIVFDIETTGLDSKN---DRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKL 62
          M  I++D+E      K+   + IIEIGA++L    K   TFQ F+ P+  +K  P   + 
Sbjct: 1  MNYIIYDLELNSKPFKSKLPNEIIEIGAIKLDSDLKEIDTFQAFIKPHYFKKLFPVVKRK 60

Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
            IT E + +  SF  I S F         +WI  N+
Sbjct: 61 TKITQEDVNNAESFKEIISSF--------RKWIGDNS 89


>gi|294499074|ref|YP_003562774.1| exonuclease family protein [Bacillus megaterium QM B1551]
 gi|294349011|gb|ADE69340.1| exonuclease family protein [Bacillus megaterium QM B1551]
          Length = 197

 Score = 35.4 bits (80), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 21/107 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTN-------RTFQVFLCPNGRKNSPEALKLH 63
           V D+ETTGL ++   IIE+ A+ ++ Y  +          ++ F  P+     P    L 
Sbjct: 11  VLDVETTGLSAQTCDIIEL-AIAVVSYDSSTGEIIDIVEEYEEFNMPS-TPIFPYITNLT 68

Query: 64  GITDEFLKDKP----SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           GIT+E +K+K        S+ +          +  IAHNA FD  F+
Sbjct: 69  GITNEMVKNKTLDDKKVESLLTSV--------SAIIAHNASFDRSFL 107


>gi|54303407|ref|YP_133400.1| putative DNA polymerase III [Photobacterium profundum SS9]
 gi|46916837|emb|CAG23600.1| putative DNA polymerase III [Photobacterium profundum SS9]
          Length = 236

 Score = 35.4 bits (80), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 4/124 (3%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+ + D+I+ IG V L  D  +   + ++++  +G     E+ +++ IT +
Sbjct: 52  VAIDFETTGLNCQQDKILSIGVVNLTTDMIELASSEEIYI-RHGEFIKAESAQINEITPK 110

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L       +     W     Q    +AH A  +  FI + L+   +    P   IDTL 
Sbjct: 111 QLHKGVDIDTAID--WLLERIQGKIVLAHCANIEKQFIESYLKDTYQLNTFPCYFIDTLQ 168

Query: 129 IARR 132
           + + 
Sbjct: 169 LEKH 172


>gi|224370128|ref|YP_002604292.1| SbcB [Desulfobacterium autotrophicum HRM2]
 gi|223692845|gb|ACN16128.1| SbcB [Desulfobacterium autotrophicum HRM2]
          Length = 471

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 2/110 (1%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + +DIET+GL+   D+I+   A+   L+  + +RT  V    N    SP A   H +T E
Sbjct: 5   LFYDIETSGLNPAFDQILTFAAIRTDLELREIDRTSIVISLRNDIVPSPGAFITHRLTPE 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDP 117
            LKD        +      N  +   I +N+  FD  F+     R   DP
Sbjct: 65  DLKDGLCEYQGVALIHRLLNTPDTISIGYNSLGFDDEFLRFAFYRNLLDP 114


>gi|33240227|ref|NP_875169.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|33237754|gb|AAP99821.1| DNA polymerase III epsilon subunit [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 236

 Score = 35.4 bits (80), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGLD + D+ IE+GA+      ++      FL P    N+P A  ++ I+ + 
Sbjct: 15  LIVDTETTGLDPEKDQCIEVGAILFHIEKRSILAQNSFLIPAA--NNP-AEAINKISPDL 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
            +    +      F    +  +   IAHNA+FD
Sbjct: 72  TRFAQPWEEGVKYFLALVDIADVL-IAHNAEFD 103


>gi|227503895|ref|ZP_03933944.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC
           6940]
 gi|227199518|gb|EEI79566.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC
           6940]
          Length = 223

 Score = 35.0 bits (79), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 21/173 (12%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +  R + FD+ETT ++ K  RI+    V +       R     L   G +    A K+HG
Sbjct: 4   DATRMLSFDLETTSVNPKEARIVTSALVRIDGRDVDKRE---MLADPGVEIPEAAAKIHG 60

Query: 65  ITDEFLK------DKPSFSSIFS--EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           IT E  +      D+    ++ S  + WD         I +NA +D+  + A       D
Sbjct: 61  ITTEKARAEGQPHDEVLAQTVRSIRQAWD----DGLTLIVYNAAYDLSVLRALTGDFTVD 116

Query: 117 -PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHL 166
            P+    +ID +    RK    +  L  +   YG+T+  +H +   AL  + +
Sbjct: 117 GPVFDPFVIDRVKDKWRK---GKRTLGDVSAHYGVTLENAHEATSDALAAARI 166


>gi|330804170|ref|XP_003290071.1| hypothetical protein DICPUDRAFT_154549 [Dictyostelium purpureum]
 gi|325079825|gb|EGC33407.1| hypothetical protein DICPUDRAFT_154549 [Dictyostelium purpureum]
          Length = 262

 Score = 35.0 bits (79), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 19/110 (17%)

Query: 15  ETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           ETTGL S N   IE+    L     Y K+N T  +         +PE+ K++ +T   L 
Sbjct: 149 ETTGLTS-NAENIELSCACLNGEAFYRKSNPTISI---------TPESTKINKLTCHDLA 198

Query: 72  DKPSFSSIFSEFWDFFNEQNAE------WIAHNAKFDVGFINAELQRINK 115
               +  +  EF++F  +Q+++       IAHN K+D G I   L +  K
Sbjct: 199 GHQYWEKVEEEFFNFIVQQSSDDDAPIYIIAHNEKYDRGRIAFHLTKSTK 248


>gi|293346679|ref|XP_002726376.1| PREDICTED: calcium-dependent secretion activator 1-like isoform 4
           [Rattus norvegicus]
 gi|293358456|ref|XP_002729336.1| PREDICTED: calcium-dependent secretion activator 1-like isoform 3
           [Rattus norvegicus]
          Length = 1300

 Score = 35.0 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 62/160 (38%), Gaps = 30/160 (18%)

Query: 20  DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSI 79
           D + DRI+ + A+    Y  T ++++       +K +P+   LH     F KD   F   
Sbjct: 577 DDEQDRILWVQAM----YRATGQSYKPVPAVQSQKLNPKGGTLHADAQLFGKDADRFQKH 632

Query: 80  -FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138
              EF            A   K D  F+   LQR   D     R+ D+ S      P   
Sbjct: 633 GMDEFIS----------ASPCKLDHAFLFRILQRQTLD----HRLNDSYSCLGWFSPGQV 678

Query: 139 NDLNSLCKRYGITISHR-----------SKHGALLDSHLL 167
             L+  C RYG+   HR           S++GA++D  LL
Sbjct: 679 FVLDEYCARYGVRGCHRHLCYLTELMEHSENGAVIDPTLL 718


>gi|293346675|ref|XP_002726374.1| PREDICTED: calcium-dependent secretion activator 1-like isoform 2
           [Rattus norvegicus]
 gi|293358451|ref|XP_002729334.1| PREDICTED: calcium-dependent secretion activator 1-like isoform 1
           [Rattus norvegicus]
          Length = 1304

 Score = 35.0 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 62/160 (38%), Gaps = 30/160 (18%)

Query: 20  DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSI 79
           D + DRI+ + A+    Y  T ++++       +K +P+   LH     F KD   F   
Sbjct: 577 DDEQDRILWVQAM----YRATGQSYKPVPAVQSQKLNPKGGTLHADAQLFGKDADRFQKH 632

Query: 80  -FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138
              EF            A   K D  F+   LQR   D     R+ D+ S      P   
Sbjct: 633 GMDEFIS----------ASPCKLDHAFLFRILQRQTLD----HRLNDSYSCLGWFSPGQV 678

Query: 139 NDLNSLCKRYGITISHR-----------SKHGALLDSHLL 167
             L+  C RYG+   HR           S++GA++D  LL
Sbjct: 679 FVLDEYCARYGVRGCHRHLCYLTELMEHSENGAVIDPTLL 718


>gi|313892527|ref|ZP_07826115.1| exonuclease [Dialister microaerophilus UPII 345-E]
 gi|313119055|gb|EFR42259.1| exonuclease [Dialister microaerophilus UPII 345-E]
          Length = 195

 Score = 35.0 bits (79), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 14/161 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+    D ET      N     +G V + D SK    +   + P       E ++++GI 
Sbjct: 1   MKYTAIDFETAFWGKGN--ACSLGIV-ISDGSKLTDEWYDLIRPVHLNFDEECIRVNGIH 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +KDKP F   + +     N   A   AHNA FD G +   + R     ++     DT
Sbjct: 58  PEDVKDKPEFPYYWDKISGLLNGTVA--FAHNAPFDFGVLANTIDRYELPDINFCW-GDT 114

Query: 127 LSIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           + I+R   +K P+ +  LN++ +      +H   H AL D+
Sbjct: 115 VEISRILWKKLPNHK--LNTVAEFLNFEFNH---HQALDDA 150


>gi|282849129|ref|ZP_06258514.1| DNA polymerase III subunit epsilon domain protein [Veillonella
           parvula ATCC 17745]
 gi|282580833|gb|EFB86231.1| DNA polymerase III subunit epsilon domain protein [Veillonella
           parvula ATCC 17745]
          Length = 209

 Score = 35.0 bits (79), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 6/117 (5%)

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           E +++HGI  + +  + +F  +++  ++   + N   +AHNAKFD+  + A L    K P
Sbjct: 50  ECIEIHGIQPKDVLHEKTFDQLWNAIYENHLKGNI-MVAHNAKFDMNVLRATLDYY-KIP 107

Query: 118 LDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                   T+ ++R   P   N  LN++    G+   H   H AL D+   + V ++
Sbjct: 108 WPELDYACTVKLSRAVWPDLVNHKLNTMAAYIGVEFKH---HYALDDAETCAKVVLE 161


>gi|153940748|ref|YP_001391589.1| exonuclease family protein [Clostridium botulinum F str. Langeland]
 gi|152936644|gb|ABS42142.1| exonuclease family protein [Clostridium botulinum F str. Langeland]
 gi|295319617|gb|ADF99994.1| exonuclease family protein [Clostridium botulinum F str. 230613]
          Length = 253

 Score = 35.0 bits (79), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 106/242 (43%), Gaps = 19/242 (7%)

Query: 7   MRKIVFDIE-TTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEA 59
           M  I+FD+E   G +++ +      II+IGA++L +   T  TF   + P    + +P  
Sbjct: 1   MNYIIFDLEFNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSDLNPFV 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             L  +T + L    SF  ++ +F  F N ++N   I         F N    +++ + +
Sbjct: 61  KNLTNLTMDSLNKAKSFREVYKDFLKFLNKDRNIFCIWGMTDMKELFRNIVYYQLDTESM 120

Query: 119 DPSRIIDTLSIARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P   I+  +   +   +P S N  L++  + + IT  +   H A  D+   ++V+ K+ 
Sbjct: 121 -PKEYINVQAYTGKYLNYPKSINVGLSNAVQLFHIT-KNNDFHNAFNDAFYTAEVFKKIY 178

Query: 176 VGGSQINFGFKTNEDRFF--KEEKKTVPNISLLKRDKPLFTRITKEELDEHD--KTIQTL 231
               +      TN    +  K  K  +  ++L K+ + +F   TK  L E D  K   T+
Sbjct: 179 SEKMRTKIYKPTNNSTTYRTKNTKTKIDTVNLFKQFEKMFN--TKLTLQEQDMIKLAYTM 236

Query: 232 GK 233
           GK
Sbjct: 237 GK 238


>gi|159906145|ref|YP_001549807.1| exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C6]
 gi|159887638|gb|ABX02575.1| Exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C6]
          Length = 191

 Score = 35.0 bits (79), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 15/113 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR----KNSPEALKLHGI 65
           +  D ETTGL          G +  L Y  T++  ++    N      + S  A K+HG+
Sbjct: 3   VFLDTETTGLHP--------GQIAQLSYLVTDKNLKLKKVFNQYYSVDRMSRSAAKVHGL 54

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRINKD 116
           T + L D+ S    F +  D   +  +++  I HN  FD+ F+ AE +R+  +
Sbjct: 55  TMDIL-DELSNGMTFEDTVDEVRDDLEDSVIIGHNISFDIRFLKAEFERLGPE 106


>gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
 gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
          Length = 951

 Score = 35.0 bits (79), Expect = 9.2,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KDK    +I  EF  FF  ++ E IAHN K+D+      L R       P  + DT+   
Sbjct: 415 KDKKEIQAIVDEFKPFFEHKSIEKIAHNMKYDIQV----LHRYGVQFAGP--LFDTMIAH 468

Query: 131 RRKHPSSRNDLNSLCKRY 148
               P S+  ++ L + Y
Sbjct: 469 YLIQPESKQGMDFLAEYY 486


>gi|298207508|ref|YP_003715687.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus
           HTCC2559]
 gi|83850144|gb|EAP88012.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus
           HTCC2559]
          Length = 1454

 Score = 35.0 bits (79), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 17/133 (12%)

Query: 10  IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           ++FD ETTGL         D+ N  R I+I      D  K      + + P+G     ++
Sbjct: 3   LIFDTETTGLPKNYNAPITDTDNWPRCIQIAWQLHDDMGKLVSHDDMLIKPDGFNIPYDS 62

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKD 116
            ++HGI+ E L DK     + S     FNE   Q    +  N  FD+  + AE  R   D
Sbjct: 63  EQIHGISTE-LADKNGVDLVDS--LHKFNEALKQTKFVVGQNVAFDINIMGAEFYRKGID 119

Query: 117 -PLDPSRIIDTLS 128
            PL    ++DT +
Sbjct: 120 NPLQELPVLDTCT 132


>gi|269797470|ref|YP_003311370.1| exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM
           2008]
 gi|269094099|gb|ACZ24090.1| Exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM
           2008]
          Length = 209

 Score = 35.0 bits (79), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 6/117 (5%)

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           E +++HGI  + +  + +F  +++  ++   + N   +AHNAKFD+  + A L    K P
Sbjct: 50  ECIEIHGIQPKDVLHEKTFDQLWNAIYENHLKGNI-MVAHNAKFDMNVLRATLDYY-KIP 107

Query: 118 LDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                   T+ ++R   P   N  LN++    G+   H   H AL D+   + V ++
Sbjct: 108 WPELDYACTVKLSRAVWPDLVNHKLNTMAAYIGVEFKH---HYALDDAETCAKVVLE 161


>gi|262394233|ref|YP_003286087.1| DNA polymerase III subunit alpha [Vibrio sp. Ex25]
 gi|262337827|gb|ACY51622.1| DNA polymerase III alpha subunit (gram-positive type) [Vibrio sp.
           Ex25]
          Length = 205

 Score = 35.0 bits (79), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+ D ETTGL + +  I+E  A+     + +       L         +A  +HGIT+E 
Sbjct: 10  IIIDTETTGLGA-DAEIVEFTAI----CANSGEVIVDELVKPTCSIPADATAIHGITNED 64

Query: 70  LKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           +KD P F  +FS  F    N +    I +N+ FD   I   L +
Sbjct: 65  VKDAPDFHLMFSNRFLPLLNGRPI--IIYNSDFDTRLIIQSLDK 106


>gi|294792957|ref|ZP_06758103.1| exonuclease [Veillonella sp. 6_1_27]
 gi|294455902|gb|EFG24266.1| exonuclease [Veillonella sp. 6_1_27]
          Length = 209

 Score = 35.0 bits (79), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 6/117 (5%)

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           E +++HGI  + +  + +F  +++  ++   + N   +AHNAKFD+  + A L    K P
Sbjct: 50  ECIEIHGIQPKDVLHEKTFDQLWNAIYENHLKGNI-MVAHNAKFDMNVLRATLDYY-KIP 107

Query: 118 LDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                   T+ ++R   P   N  LN++    G+   H   H AL D+   + V ++
Sbjct: 108 WPELDYACTVKLSRAVWPDLVNHKLNTMAAYIGVEFKH---HYALDDAETCAKVVLE 161


>gi|221234528|ref|YP_002516964.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus
           NA1000]
 gi|220963700|gb|ACL95056.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus
           NA1000]
          Length = 209

 Score = 35.0 bits (79), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 7/146 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +M+ I  D ET      +   I +  +E     +  R    ++ P G + +   +  HGI
Sbjct: 7   RMKVIAIDFETASEQRASPCSIGLAWIE---DGEVARVEHHYIRPPGNRFAAFNMAFHGI 63

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E + D   +  +          + A  +AHNA FD+  I    +  +  P      + 
Sbjct: 64  RPEHVADADEWPDVLERIRPEL--EGALVLAHNASFDISVIRRTCEHYDV-PAPGFDYLC 120

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGI 150
           T+ +AR   P    + LN +C   G+
Sbjct: 121 TVQVARSVWPELPSHKLNVVCGHLGV 146


Searching..................................................done


Results from round 2




>gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040495|gb|ACT57291.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 245

 Score =  370 bits (951), Expect = e-101,   Method: Composition-based stats.
 Identities = 245/245 (100%), Positives = 245/245 (100%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL
Sbjct: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP
Sbjct: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ
Sbjct: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY
Sbjct: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240

Query: 241 ISSNQ 245
           ISSNQ
Sbjct: 241 ISSNQ 245


>gi|315122041|ref|YP_004062530.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495443|gb|ADR52042.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 244

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 199/244 (81%), Positives = 222/244 (90%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + KNKMRKI+FDIETTGLD KNDRIIEIGAVELLDYSKT RTFQVFL P+G+K +PEALK
Sbjct: 1   MLKNKMRKIIFDIETTGLDKKNDRIIEIGAVELLDYSKTGRTFQVFLSPDGKKVNPEALK 60

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           LHGITDEFL+DKP FS+IF EFWDFFN++NAEWIAHNAKFDVGFINAELQRINKDPLDPS
Sbjct: 61  LHGITDEFLRDKPFFSAIFPEFWDFFNDKNAEWIAHNAKFDVGFINAELQRINKDPLDPS 120

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           RI+DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL+DVY++MMVGGSQI
Sbjct: 121 RIVDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLADVYVQMMVGGSQI 180

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
           +FGFK NED  F +++    NIS LKR+KPL  RIT+EE+ EH KTIQ +GKN+IW+RY 
Sbjct: 181 DFGFKANEDFLFGKDENIAQNISFLKREKPLSLRITEEEIAEHTKTIQMIGKNSIWNRYT 240

Query: 242 SSNQ 245
           SSNQ
Sbjct: 241 SSNQ 244


>gi|237816422|ref|ZP_04595415.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A]
 gi|237788489|gb|EEP62704.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A]
          Length = 248

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 109/241 (45%), Positives = 154/241 (63%), Gaps = 4/241 (1%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R + MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +
Sbjct: 11  RGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI++E L DKP F+ I  EF +F +   A  +AHNA FD+GFINAEL R+++  +    
Sbjct: 71  HGISNEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEH 128

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+++ GG Q  
Sbjct: 129 IVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELI-GGKQTA 187

Query: 183 FGFKTNEDRFFKEEKKT-VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
            G          + +      + L  R +PL  RI+  E   H   ++ +G  A+W +Y+
Sbjct: 188 LGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYL 247

Query: 242 S 242
           S
Sbjct: 248 S 248


>gi|225626451|ref|ZP_03784490.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo]
 gi|225618108|gb|EEH15151.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo]
          Length = 248

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 109/241 (45%), Positives = 154/241 (63%), Gaps = 4/241 (1%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R + MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +
Sbjct: 11  RGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI++E L DKP F+ I  EF +F +   A  +AHNA FD+GFINAEL R+++  +    
Sbjct: 71  HGISNEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEH 128

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+++ GG Q  
Sbjct: 129 IVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELI-GGKQTA 187

Query: 183 FGFKTNEDRFFKEEKKT-VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
            G          + +      + L  R +PL  RI+  E   H   ++ +G  A+W +Y+
Sbjct: 188 LGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYL 247

Query: 242 S 242
           S
Sbjct: 248 S 248


>gi|17988339|ref|NP_540973.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           16M]
 gi|17984115|gb|AAL53237.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str.
           16M]
          Length = 248

 Score =  277 bits (710), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 109/241 (45%), Positives = 154/241 (63%), Gaps = 4/241 (1%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R + MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +
Sbjct: 11  RGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI++E L DKP F+ I  EF +F +   A  +AHNA FD+GFINAEL R+++  +    
Sbjct: 71  HGISNEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEH 128

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+++ GG Q  
Sbjct: 129 IVDTLALARRKHPIGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELI-GGKQTA 187

Query: 183 FGFKTNEDRFFKEEKKT-VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
            G          + +      + L  R +PL  RI+  E   H   ++ +G  A+W +Y+
Sbjct: 188 LGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYL 247

Query: 242 S 242
           S
Sbjct: 248 S 248


>gi|153008185|ref|YP_001369400.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC
           49188]
 gi|151560073|gb|ABS13571.1| DNA polymerase III, epsilon subunit [Ochrobactrum anthropi ATCC
           49188]
          Length = 231

 Score =  277 bits (709), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 112/234 (47%), Positives = 151/234 (64%), Gaps = 3/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  ++ P GR+  PEAL +HGI+
Sbjct: 1   MREIVFDTETTGLERLEDRVIEIGGVELINKFPTGRTFHKYINPQGRQVHPEALAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E L DKP+F+ +  EF +FF+   A+ +AHNA FD+GFINAEL R+ +  +   RIIDT
Sbjct: 61  NEQLLDKPTFAEVLDEFLEFFD--GAKLVAHNAMFDLGFINAELARLGQAEIQSERIIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LCKRYGI   HR+ HGALLDS +L++VYI+++ GG Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIENGHRTLHGALLDSEILAEVYIELI-GGKQTALGLS 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
                      ++   I L  R +PL  RI+  E   H   +  LG  AIW +Y
Sbjct: 178 MGGAVSGNNAGESGAAIVLAARPRPLAPRISDAERAAHAALVDKLGDKAIWKKY 231


>gi|239833112|ref|ZP_04681441.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG
           3301]
 gi|239825379|gb|EEQ96947.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG
           3301]
          Length = 233

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/236 (47%), Positives = 152/236 (64%), Gaps = 3/236 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  ++ P GR+   EAL +HGI+
Sbjct: 1   MREIVFDTETTGLERLEDRVIEIGGVELINKFPTGRTFHKYINPQGRQVHAEALAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E L DKP+F+ I  EF +FF+   A+ +AHNA FD+GFINAEL R+ +  +   R++DT
Sbjct: 61  NEQLLDKPTFAEILDEFLEFFD--GAKLVAHNAMFDLGFINAELARLGQAEIQVERVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LCKRYGI   HR+ HGALLDS +L++VYI+++ GG Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIENGHRTLHGALLDSEILAEVYIELI-GGKQTALGLS 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                       +   I L  R +PL  RI+ EE   H   +  LG  AIW +Y+S
Sbjct: 178 IGGTASGSNAGDSGAAIILAARPRPLAPRISDEERAAHAALVAGLGDKAIWKKYLS 233


>gi|23502919|ref|NP_699046.1| DNA polymerase III subunit epsilon [Brucella suis 1330]
 gi|62290915|ref|YP_222708.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str.
           9-941]
 gi|82700826|ref|YP_415400.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar
           Abortus 2308]
 gi|148559666|ref|YP_001259876.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840]
 gi|161619985|ref|YP_001593872.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365]
 gi|163844089|ref|YP_001628493.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445]
 gi|189025128|ref|YP_001935896.1| DNA polymerase III subunit epsilon [Brucella abortus S19]
 gi|254690204|ref|ZP_05153458.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|254694694|ref|ZP_05156522.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|254696321|ref|ZP_05158149.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700703|ref|ZP_05162531.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|254705074|ref|ZP_05166902.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|254709049|ref|ZP_05170860.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|254713525|ref|ZP_05175336.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|254716120|ref|ZP_05177931.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|254731237|ref|ZP_05189815.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|256030574|ref|ZP_05444188.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|256060036|ref|ZP_05450218.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|256158570|ref|ZP_05456460.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|256253981|ref|ZP_05459517.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|256258458|ref|ZP_05463994.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260169479|ref|ZP_05756290.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99]
 gi|260546177|ref|ZP_05821917.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260567458|ref|ZP_05837928.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|260755744|ref|ZP_05868092.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|260758968|ref|ZP_05871316.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|260760692|ref|ZP_05873035.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884770|ref|ZP_05896384.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|261215021|ref|ZP_05929302.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|261217890|ref|ZP_05932171.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261221121|ref|ZP_05935402.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|261316547|ref|ZP_05955744.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|261321260|ref|ZP_05960457.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|261324012|ref|ZP_05963209.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261751212|ref|ZP_05994921.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261755776|ref|ZP_05999485.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|261759005|ref|ZP_06002714.1| DNA polymerase III [Brucella sp. F5/99]
 gi|265987621|ref|ZP_06100178.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|265997081|ref|ZP_06109638.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|294851300|ref|ZP_06791973.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
 gi|297247299|ref|ZP_06931017.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str.
           B3196]
 gi|23348951|gb|AAN30961.1| DNA polymerase III, epsilon subunit [Brucella suis 1330]
 gi|62197047|gb|AAX75347.1| DnaQ, DNA polymerase III, epsilon subunit [Brucella abortus bv. 1
           str. 9-941]
 gi|82616927|emb|CAJ12028.1| Beta tubulin:DNA polymerase III, epsilon subunit:Exonuclease:DNA
           polymerase 3, epsilon subunit [Brucella melitensis
           biovar Abortus 2308]
 gi|148370923|gb|ABQ60902.1| DNA polymerase III, epsilon subunit [Brucella ovis ATCC 25840]
 gi|161336796|gb|ABX63101.1| DNA polymerase III, epsilon subunit [Brucella canis ATCC 23365]
 gi|163674812|gb|ABY38923.1| DNA polymerase III, epsilon subunit [Brucella suis ATCC 23445]
 gi|189020700|gb|ACD73422.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|260096284|gb|EEW80160.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260156976|gb|EEW92056.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|260669286|gb|EEX56226.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|260671124|gb|EEX57945.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675852|gb|EEX62673.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|260874298|gb|EEX81367.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260916628|gb|EEX83489.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|260919705|gb|EEX86358.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|260922979|gb|EEX89547.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261293950|gb|EEX97446.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|261295770|gb|EEX99266.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|261299992|gb|EEY03489.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261738989|gb|EEY26985.1| DNA polymerase III [Brucella sp. F5/99]
 gi|261740965|gb|EEY28891.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261745529|gb|EEY33455.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|262551549|gb|EEZ07539.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|264659818|gb|EEZ30079.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|294819889|gb|EFG36888.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
 gi|297174468|gb|EFH33815.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str.
           B3196]
          Length = 234

 Score =  275 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 108/237 (45%), Positives = 152/237 (64%), Gaps = 4/237 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +HGI+
Sbjct: 1   MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E L DKP F+ I  EF +F +   A  +AHNA FD+GFINAEL R+++  +    I+DT
Sbjct: 61  NEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEHIVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+++ GG Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELI-GGKQTALGLT 177

Query: 187 TNEDRFFKEEKKT-VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                   + +      + L  R +PL  RI+  E   H   ++ +G  A+W +Y+S
Sbjct: 178 MESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234


>gi|256370469|ref|YP_003107980.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
 gi|256000632|gb|ACU49031.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
          Length = 234

 Score =  275 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 108/237 (45%), Positives = 152/237 (64%), Gaps = 4/237 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +HGI+
Sbjct: 1   MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E L DKP F+ I  EF +F +   A  +AHNA FD+GFINAEL R+++  +    I+DT
Sbjct: 61  NEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEHIVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+++ GG Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIENSHRTLHGALLDAQILAEVYIELI-GGKQTALGLT 177

Query: 187 TNEDRFFKEEKKT-VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                   + +      + L  R +PL  RI+  E   H   ++ +G  A+W +Y+S
Sbjct: 178 MESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234


>gi|254718114|ref|ZP_05179925.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|265983066|ref|ZP_06095801.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|306839740|ref|ZP_07472542.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653]
 gi|306842813|ref|ZP_07475453.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2]
 gi|306843489|ref|ZP_07476090.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1]
 gi|264661658|gb|EEZ31919.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|306276180|gb|EFM57880.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1]
 gi|306287007|gb|EFM58518.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2]
 gi|306405200|gb|EFM61477.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653]
          Length = 234

 Score =  274 bits (701), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 108/237 (45%), Positives = 152/237 (64%), Gaps = 4/237 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +HGI+
Sbjct: 1   MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E L DKP F+ I  EF +F +   A  +AHNA FD+GFINAEL R+++  +    I+DT
Sbjct: 61  NEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEIASEHIVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+++ GG Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELI-GGKQTALGLT 177

Query: 187 TNEDRFFKEEKKT-VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                   + +      + L  R +PL  RI+  E   H   ++ +G  A+W +Y+S
Sbjct: 178 MESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234


>gi|15963758|ref|NP_384111.1| DNA polymerase III subunit epsilon [Sinorhizobium meliloti 1021]
 gi|307302561|ref|ZP_07582318.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C]
 gi|307316108|ref|ZP_07595552.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83]
 gi|15072933|emb|CAC41392.1| Probable DNA polymerase III, epsilon chain [Sinorhizobium meliloti
           1021]
 gi|306897948|gb|EFN28690.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83]
 gi|306903231|gb|EFN33821.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C]
          Length = 242

 Score =  274 bits (701), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 161/239 (67%), Gaps = 4/239 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DR+IEIG +EL +   T RT  +++ P  RK  PEAL +HGIT
Sbjct: 1   MREIIFDTETTGLDNREDRVIEIGGIELENQFPTGRTIHIYINPGERKVHPEALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDKP F+ +  E  DFF   +A W+AHNA FD+GFINAE +R+   P+   R+IDT
Sbjct: 61  DEFLKDKPPFADVAQEIVDFFG--DARWVAHNATFDIGFINAEFERLGLPPIGSDRVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LC+RYG+  SHR++HGALLDS LL++VYI+M+ GG Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCRRYGVDNSHRTRHGALLDSELLAEVYIEMI-GGRQAALGLV 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245
             E      E    P + ++ R++PL  R+T+ E+  H   +  +G NAIW +Y  ++ 
Sbjct: 178 VTEAGDRPIEADDGP-VVVVTRERPLRPRLTEAEIAAHAALVAKIGANAIWSKYSEADD 235


>gi|225853502|ref|YP_002733735.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457]
 gi|256045675|ref|ZP_05448553.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256263016|ref|ZP_05465548.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|260562976|ref|ZP_05833462.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|265992096|ref|ZP_06104653.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|225641867|gb|ACO01781.1| DNA polymerase III, epsilon subunit [Brucella melitensis ATCC
           23457]
 gi|260152992|gb|EEW88084.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|263003162|gb|EEZ15455.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092889|gb|EEZ17064.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|326410068|gb|ADZ67133.1| DNA polymerase III subunit epsilon [Brucella melitensis M28]
 gi|326539784|gb|ADZ87999.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90]
          Length = 234

 Score =  274 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 108/237 (45%), Positives = 152/237 (64%), Gaps = 4/237 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +HGI+
Sbjct: 1   MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E L DKP F+ I  EF +F +   A  +AHNA FD+GFINAEL R+++  +    I+DT
Sbjct: 61  NEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEHIVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LCKRYGI  SHR+ HGALLD+ +L++VYI+++ GG Q   G  
Sbjct: 119 LALARRKHPIGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELI-GGKQTALGLT 177

Query: 187 TNEDRFFKEEKKT-VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                   + +      + L  R +PL  RI+  E   H   ++ +G  A+W +Y+S
Sbjct: 178 MESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234


>gi|150398405|ref|YP_001328872.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419]
 gi|150029920|gb|ABR62037.1| DNA polymerase III, epsilon subunit [Sinorhizobium medicae WSM419]
          Length = 242

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 161/239 (67%), Gaps = 4/239 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DR+IEIG +EL +   T RT  +++ P  RK  PEAL +HGIT
Sbjct: 1   MREIIFDTETTGLDNREDRVIEIGGIELENQFPTGRTIHIYINPGDRKVHPEALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+FLKDKPSF+ I  E  DFF   +A W+AHNA FD+GFINAE +R+   P+   R+IDT
Sbjct: 61  DDFLKDKPSFAEIAQEIVDFFG--DARWVAHNATFDMGFINAEFERLGLPPVGSDRVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRKHP   N L++LC+RYGI  SHR++HGALLDS LL++VYI+M+ GG Q   G  
Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTRHGALLDSELLAEVYIEMI-GGRQAALGLV 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245
             E      E    P I ++ R++PL  R+T+ E+  H   +  +G NAIW ++  +  
Sbjct: 178 MTETGGRSLEADDGPVI-IVGRERPLRPRLTEAEIAAHAALVSKIGANAIWAKFSEAED 235


>gi|209551510|ref|YP_002283427.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537266|gb|ACI57201.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 245

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 120/244 (49%), Positives = 162/244 (66%), Gaps = 8/244 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T     +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNVIHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK  F+ +  E   FF   +A+WIAHNA FD+GFINAEL RI   P+ P R++DT
Sbjct: 61  DEFLKDKKPFAEVAEEILTFFG--DAKWIAHNATFDMGFINAELARIGLPPILPERVLDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+M+ GG Q  FG  
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMI-GGRQAAFGLS 177

Query: 187 T-----NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
                    R    E+  V   S+L+R +PL  R+++ E   H+  +  LG+  IW +Y 
Sbjct: 178 MTATSGQNGRGDATEEDDVVIASVLERPRPLAPRLSQSEAQAHEALVAKLGEKGIWAKYA 237

Query: 242 SSNQ 245
           S +Q
Sbjct: 238 SLDQ 241


>gi|222084205|ref|YP_002542731.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
 gi|221721653|gb|ACM24809.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
          Length = 236

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 112/237 (47%), Positives = 157/237 (66%), Gaps = 6/237 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD+K DRIIEIG +EL ++  T +T  +++ P  RK  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNKADRIIEIGGIELFNHFPTGKTLHLYINPGDRKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE LKDKP F+ +  E   FF  + A+WIAHNA FD+GF+NAE  R+ + P+ P  +IDT
Sbjct: 61  DESLKDKPPFADVADEILAFF--EGAKWIAHNATFDMGFVNAEFNRLGRPPILPDMVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LC+RYGI  SHR++HGALLDS LL++VYI+M+ GG Q   G  
Sbjct: 119 LAMARRKHPMGPNSLDALCRRYGIDNSHRTRHGALLDSELLAEVYIEMI-GGRQTALGLG 177

Query: 187 T---NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           +   +  R  +        + +L R +PL  R+++ E   H   +  LG+  IW +Y
Sbjct: 178 SSNGSSARSRQNNDVEEVVVEILARPQPLPGRVSETEEAAHAALVAKLGEKGIWSKY 234


>gi|227823864|ref|YP_002827837.1| DNA polymerase III subunit epsilon [Sinorhizobium fredii NGR234]
 gi|227342866|gb|ACP27084.1| DNA polymerase III, epsilon subunit [Sinorhizobium fredii NGR234]
          Length = 232

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 117/234 (50%), Positives = 159/234 (67%), Gaps = 4/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLDS+ DR+IEIG VEL +   T RT  +++ P  RK  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDSREDRVIEIGGVELENQFPTGRTIHIYINPGDRKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+FLKDKPSF+ +  E  DFF   +A W+AHNA FD+GFINAE  R+   P+   R+ DT
Sbjct: 61  DDFLKDKPSFADVVEEIVDFFG--DARWVAHNATFDIGFINAEFDRLGLPPVVIDRVTDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+M+ GG Q   G  
Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNSHRAKHGALLDSELLAEVYIEMI-GGRQAALGLV 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           T+E      +    P I +++R++ L  R+T+ E+  H   +  +G  AIW +Y
Sbjct: 178 TSEIGGLAVQADDGPII-VMQRERLLAPRLTEAEIAAHAALVSKIGAKAIWMKY 230


>gi|86355674|ref|YP_467566.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42]
 gi|86279776|gb|ABC88839.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CFN 42]
          Length = 240

 Score =  267 bits (684), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 116/243 (47%), Positives = 160/243 (65%), Gaps = 8/243 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK  F+++  E   FF   + +WIAHNA FD+GFINAE  RI   P+ P ++IDT
Sbjct: 61  DEFLKDKKPFAAVADEILAFFG--DGKWIAHNATFDMGFINAEFARIGLPPILPDKVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+M+ GG Q  FG  
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMI-GGRQAAFGLS 177

Query: 187 TNEDRFFKEEKKTV-----PNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
            +         +          + L+R +PL +R+++ E   H+  +  LG+  IW +Y 
Sbjct: 178 ISGQPGQAARGEMAMEDDMAFAAALERPRPLGSRLSRSEAQAHEALVAKLGEKGIWAKYA 237

Query: 242 SSN 244
           SSN
Sbjct: 238 SSN 240


>gi|218660611|ref|ZP_03516541.1| DNA polymerase III subunit epsilon [Rhizobium etli IE4771]
          Length = 238

 Score =  267 bits (683), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 113/239 (47%), Positives = 160/239 (66%), Gaps = 5/239 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK +F+ +  E   FF   +A+WIAHNA FD+GFINAE  RI   P+ P R++DT
Sbjct: 61  DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRK+P   N L++LC+RYG+  SHR+KHGALLDS LL++VYI+M+ GG Q   G  
Sbjct: 119 LSMARRKNPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMI-GGRQAALGLG 177

Query: 187 TNEDRFFKE--EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
            +      E   +     + +L+R +PL  R+++ E   H+  +  LG+  IW ++ SS
Sbjct: 178 QSGQAAGGEMAMEDDGAILEVLERPRPLAPRLSQAEAQAHEALVAKLGEKGIWSKFASS 236


>gi|190889645|ref|YP_001976187.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652]
 gi|190694924|gb|ACE89009.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652]
          Length = 241

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 111/240 (46%), Positives = 158/240 (65%), Gaps = 6/240 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK +F+ +  E   FF   +A+WIAHNA FD+GFINAE  RI   P+ P R++DT
Sbjct: 61  DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFGF 185
           LS+ARRKHP   N L++LC+RYG+  SHR+KHGALLDS LL++VYI+M+ G  + +  G 
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMIGGRQAALGLGL 178

Query: 186 KTNEDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                +  + E   +      ++L+R +PL  R+++ E   H   +  LG   IW ++ S
Sbjct: 179 SGQSGQTARGEMAMEDDGVISAVLERPRPLAPRLSQAEAQAHAALVSKLGDKGIWSKFAS 238


>gi|110635810|ref|YP_676018.1| DNA polymerase III subunit epsilon [Mesorhizobium sp. BNC1]
 gi|110286794|gb|ABG64853.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1]
          Length = 242

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 112/238 (47%), Positives = 160/238 (67%), Gaps = 4/238 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD + DR+IE+G VEL +   T RT   F+ P GR   P+A  +HGI+
Sbjct: 1   MREIIFDTETTGLDPREDRVIELGCVELANRFPTGRTLHYFINPQGRSVHPDAQAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  L  KP F+ I  EF +F +   A+ +AHNA FD+GFINAE QR+ +  +DP+R+IDT
Sbjct: 61  DADLAGKPVFAEILDEFLEFID--GAKLVAHNANFDIGFINAEFQRVGQPYIDPARVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L+IARRKHP   N L++LC+RYGI  SHR+KHGALLD+ LL++VYI++  GG Q +FG +
Sbjct: 119 LAIARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDAELLAEVYIEL-AGGKQASFGLE 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
                  +E   +V  ++L  R +PL +R+T EE   H+  +  +G+NA+W + + + 
Sbjct: 178 IATQGVAEETSSSV-IVALPPRPRPLRSRLTPEEQQAHEALVAGIGENALWRKLMPAE 234


>gi|327191192|gb|EGE58235.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CNPAF512]
          Length = 241

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 110/240 (45%), Positives = 159/240 (66%), Gaps = 6/240 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK +F+ +  E   FF   +A+WIAHNA FD+GFINAE  RI   P+ P R++DT
Sbjct: 61  DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFGF 185
           LS+ARRKHP   N L++LC+RYG+  SHR+KHGALLDS LL++VYI+M+ G  + +  G 
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMIGGRQAALGLGL 178

Query: 186 KTNEDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                +  + +   +      ++L+R +PL  R+++ E   H   +  LG+  IW ++ S
Sbjct: 179 SGQSGQTARGDMAMEDDGVISAVLERPRPLAPRLSQAEAQAHAALVSKLGEKGIWSKFAS 238


>gi|325291458|ref|YP_004277322.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3]
 gi|325059311|gb|ADY63002.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3]
          Length = 233

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 114/234 (48%), Positives = 155/234 (66%), Gaps = 3/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGL+SK DR+IEIG +EL ++  T RT  +++ P  RK  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLESKLDRVIEIGGIELNNHFPTGRTLHIYINPEDRKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+FLKDKP F+ +  E  +FF  + A W+AHNA FD+GFINAE  R+   P+    + DT
Sbjct: 61  DDFLKDKPKFAEVVDEIREFF--EGARWVAHNATFDMGFINAEFARLGIAPVSSELVTDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+M+ GG Q   GF 
Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMI-GGRQTALGFG 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           +   +     +        L+R  PL +R+  E +  H K +  +G  AIW+RY
Sbjct: 178 SGSKQQAVTIEDDDVPHEPLQRPHPLPSRLDAETIAAHGKLVLGMGDKAIWNRY 231


>gi|83953070|ref|ZP_00961792.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1]
 gi|83842038|gb|EAP81206.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1]
          Length = 228

 Score =  264 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 98/233 (42%), Positives = 149/233 (63%), Gaps = 8/233 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL+ +  T  T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGNTYHQYINPE-RSMPAEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL+DKP F+ I  +F DF    +++ + HNA FD+ F+NAEL+ +    +   + +D
Sbjct: 60  GDEFLRDKPKFAQIGQDFLDFIG--DSKLVIHNAAFDIKFLNAELKWMGLPQIPWEQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR++ P S   L++LC+R+GI  + R+ HGALLDS +L+DVY++++ GG Q +FG 
Sbjct: 118 TLAIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILADVYLELI-GGRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
            T   +  K+E  T P+ +   R  PL +RIT +E   H + +  LG +A+W 
Sbjct: 177 ST---KPEKKEGDTTPDWTPKPRPTPLPSRITPQEAAAHTEFVDKLGDSAVWK 226


>gi|49473693|ref|YP_031735.1| DNA polymerase III epsilon chain [Bartonella quintana str.
           Toulouse]
 gi|49239196|emb|CAF25512.1| DNA polymerase III epsilon chain [Bartonella quintana str.
           Toulouse]
          Length = 235

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/232 (44%), Positives = 151/232 (65%), Gaps = 3/232 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD + DRIIEIG VE++D   T + F V+L P G   S EA+ +HG+T
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIGCVEMIDRYLTGKRFHVYLNPQGVVISDEAVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LK++ SFS I  E  +F +   A  +AHNA FD+GF+NAEL R+NK  +    I+DT
Sbjct: 61  NERLKNEKSFSDIADELLEFIS--GATMVAHNASFDIGFLNAELGRVNKPLISVDNILDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRK P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+++ GG Q   GF+
Sbjct: 119 LAMARRKFPMGPNSLDVLCKRFGIDNSHRVFHGALLDAEILADVYIELI-GGKQGVLGFE 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
            ++      +      +++  R +PL  R++ +E   H   I+ +G+ A+W+
Sbjct: 178 NSKSVEQDSQNDKNALLAVKVRPQPLSPRLSAQEKIMHADFIKKIGEKALWN 229


>gi|116249771|ref|YP_765609.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254419|emb|CAK05493.1| putative DNA polymerase subunit [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 240

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 112/242 (46%), Positives = 163/242 (67%), Gaps = 6/242 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +F+ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK  F+ +  +   FF   +A+WIAHNA FD+GFINAE  RI   P+ P R++DT
Sbjct: 61  DEFLKDKQPFAEVAEQILTFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVLDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFGF 185
           LS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+M+ G  + +  G 
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGGRQAALGLGM 178

Query: 186 KTNEDRFFKEEKKTVPNI---SLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
               ++  + E     ++   +LL+R +PL  R+++ E   H+  +  LG+ ++W +Y +
Sbjct: 179 VGKSNQAARGEMGMEDDVVIAALLERPRPLAPRLSQTEEQAHEALVAKLGEKSVWAKYAN 238

Query: 243 SN 244
            +
Sbjct: 239 LD 240


>gi|83942021|ref|ZP_00954483.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36]
 gi|83847841|gb|EAP85716.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36]
          Length = 228

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 97/233 (41%), Positives = 149/233 (63%), Gaps = 8/233 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL+ +  T  T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGNTYHQYINPE-RSMPAEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I  +F DF    +++ + HNA FD+ F+NAEL+ +    +   + +D
Sbjct: 60  GDDFLRDKPKFAQIGQDFLDFIG--DSKLVIHNAAFDIKFLNAELKWMGLPQIPWEQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR++ P S   L++LC+R+GI  + R+ HGALLDS +L+DVY++++ GG Q +FG 
Sbjct: 118 TLAIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILADVYLELI-GGRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
            T   +  K+E  T P+ +   R  PL +RIT +E   H + +  LG +A+W 
Sbjct: 177 ST---KPEKKEGDTTPDWTPKPRPTPLPSRITPQEAAAHTEFVDKLGDSAVWK 226


>gi|163757474|ref|ZP_02164563.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
 gi|162284976|gb|EDQ35258.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
          Length = 233

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 115/233 (49%), Positives = 157/233 (67%), Gaps = 4/233 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGLD+K DRIIEIG VEL +   T R+  +F+ P+GR   P+AL +HGIT
Sbjct: 1   MREIVFDTETTGLDNKVDRIIEIGCVELENQFPTGRSLHLFINPDGRAVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+FL DKP F+ +  E   FF+   A ++AHNA FD+GF+NAE  RI   P+DP  +IDT
Sbjct: 61  DQFLADKPVFADLADEIAAFFD--GAHYVAHNANFDMGFLNAEFDRIGLPPVDPGLVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARR+HP   N L++LC+RYGI  +HR+KHGALLD+ LL+DVYI+M  GG Q   G  
Sbjct: 119 LALARRRHPMGPNSLDALCRRYGIDNAHRTKHGALLDAELLTDVYIEM-RGGRQAALGLS 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
           + E     EE ++V  I + +R   L  R+T  EL+ H   +  +G +A+W +
Sbjct: 178 SAEAGNKTEESESV-VIEIGERPGKLPERLTAGELEAHSTLVNRIGADALWLK 229


>gi|241206948|ref|YP_002978044.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860838|gb|ACS58505.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 240

 Score =  260 bits (666), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 111/242 (45%), Positives = 162/242 (66%), Gaps = 6/242 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +F+ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK  F  +  +   FF   +A+WIAHNA FD+GFINAEL RI   P+ P R++DT
Sbjct: 61  DEFLKDKQPFGEVAEQILTFFG--DAKWIAHNATFDMGFINAELARIGLPPILPERVLDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFGF 185
           LS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+M+ G  + +  G 
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGGRQAALGLGM 178

Query: 186 KTNEDRFFKEEKKTVPNI---SLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
               ++  + +     ++   ++L+R +PL  R++  E   H+  +  LG+ ++W +Y +
Sbjct: 179 VGRSNQAARGDMGMEDDVVIAAVLERPRPLAPRVSDIEEQAHEALVAKLGEKSVWAKYAN 238

Query: 243 SN 244
            +
Sbjct: 239 LD 240


>gi|222147020|ref|YP_002547977.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4]
 gi|221734010|gb|ACM34973.1| DNA polymerase III epsilon chain [Agrobacterium vitis S4]
          Length = 236

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 115/235 (48%), Positives = 159/235 (67%), Gaps = 4/235 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGL+SK DR+IEIG +EL ++  T R+F V++ P  R   P+AL +HGIT
Sbjct: 1   MREIVFDTETTGLESKLDRVIEIGGIELFNHFPTGRSFHVYINPADRAIHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            EFLKDKP F+ I  +   FF+   A+W+AHNA FD+GFINAE +R+ +  + P  +IDT
Sbjct: 61  PEFLKDKPVFADIVEDLVAFFD--GAKWVAHNATFDMGFINAEFERLGRPLVGPEHVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+M+ GG Q  FG +
Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEML-GGRQATFGLE 177

Query: 187 -TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            +         + +   + +  R K L +R+T+ E + H   ++ LG+ AIW  Y
Sbjct: 178 QSGNSDKRSRTQDSNVTVEIAARPKTLASRLTEAEQERHAALVKRLGQKAIWAHY 232


>gi|121602632|ref|YP_988343.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis
           KC583]
 gi|120614809|gb|ABM45410.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis
           KC583]
          Length = 234

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 103/234 (44%), Positives = 145/234 (61%), Gaps = 3/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD  NDRIIEIG VE++D   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLDKDNDRIIEIGCVEMVDRYLTGRQFHVYLNPQGVIIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LK +  F  I  E  +F +   A  IAHNA FD+ F+NAEL+R+NK  +    +IDT
Sbjct: 61  NERLKGEKKFDDIADELLEFID--GAMMIAHNANFDISFLNAELKRVNKPLISIDNVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRK P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+++ GG Q   GF 
Sbjct: 119 LAMARRKFPMGPNSLDVLCKRFGIDNSHRILHGALLDAEILADVYIELI-GGKQGTLGFY 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            +  R    E  +  +     R + L  R++++E   H   +  +GK A+W+++
Sbjct: 178 NSNGRHLNTENGSNISYVFKIRPQALPPRLSEQEKSMHADLVNQIGKKALWNQF 231


>gi|328541691|ref|YP_004301800.1| DNA polymerase III, epsilon subunit [polymorphum gilvum
           SL003B-26A1]
 gi|326411443|gb|ADZ68506.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 240

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 102/241 (42%), Positives = 144/241 (59%), Gaps = 11/241 (4%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I FD ETTGLD +N DR++EIG VEL ++  T  T+ V++ P  R     A  +HG+
Sbjct: 1   MREIAFDTETTGLDPRNGDRLVEIGGVELFNHVPTGNTYHVYINPE-RDMPEAAFNVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ I  EF  F    +A  + HNA FD+GFIN EL R  + P+  ++++D
Sbjct: 60  SAEFLADKPVFAEIVDEFLAFVG--DARLVIHNAAFDMGFINMELSRAGRLPIPRTQVLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L++LC RYGI  S R++HGALLDS LL++VY++++ GG Q   G 
Sbjct: 118 TLELARRKHPMGPNSLDALCGRYGIDNSRRTRHGALLDSELLAEVYLELI-GGRQTALGL 176

Query: 186 KTNEDRFFK------EEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
              E+   +      E        S   R  PL + +T+EE   H   +  +G+ AIW +
Sbjct: 177 VLQEEVSGRSYGGQSEGSGPAQVRSAPPRPVPLASWLTEEEKAAHATFVAGMGETAIWSK 236

Query: 240 Y 240
           Y
Sbjct: 237 Y 237


>gi|307943432|ref|ZP_07658776.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4]
 gi|307773062|gb|EFO32279.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4]
          Length = 239

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 100/243 (41%), Positives = 150/243 (61%), Gaps = 11/243 (4%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I FD ETTGL+ +  DR++EIG VEL ++  T +++ V++ P  R    EA ++HG+
Sbjct: 1   MREISFDTETTGLNPRGGDRLVEIGGVELWNHIPTGKSYHVYINPQ-RDMPEEAFRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++EFL DK  F  +  EF DF    +A  + HNA FD+GFIN EL+R  +  +   +++D
Sbjct: 60  SEEFLSDKQLFDQVADEFLDFVG--DATLVIHNAAFDMGFINMELERSGRRIISNDQVLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP+  N L++LC RYGI  S R KHGALLD+ +L++VY++++ GG Q   G 
Sbjct: 118 TLDLARRKHPTGPNSLDALCSRYGIDNSKRVKHGALLDAEILAEVYLELI-GGRQTALGL 176

Query: 186 KTNEDR------FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             +ED           E   + N +  +R  PL   I++ E   H   I+ +G+NAIW++
Sbjct: 177 TADEDAQTASSGGSAAEPGELGNFNAKQRPSPLTRPISEAEFAAHKAFIEGMGENAIWNK 236

Query: 240 YIS 242
           Y S
Sbjct: 237 YGS 239


>gi|15887364|ref|NP_353045.1| DNA polymerase III subunit epsilon [Agrobacterium tumefaciens str.
           C58]
 gi|15154863|gb|AAK85830.1| DNA polymerase III, epsilon chain [Agrobacterium tumefaciens str.
           C58]
          Length = 232

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 113/234 (48%), Positives = 161/234 (68%), Gaps = 4/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGL+SK DR+IEIG +EL+++  T RT  +++ P  RK  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLESKLDRVIEIGGIELINHFPTGRTLHLYISPEDRKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDKP F+ +  +  +FF+   A W+AHNA FD+GFINAE  R+  +P+    + DT
Sbjct: 61  DEFLKDKPKFAEVIDQIREFFD--GARWVAHNATFDMGFINAEFARLGIEPVSAELVTDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS+ARRK+P   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+M+ GG Q   GF 
Sbjct: 119 LSLARRKNPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMI-GGRQTALGFG 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           +   +     ++ VP ++ L+R   L +R+  + +  H K +  +G  AIW+RY
Sbjct: 178 SAARQETIIIEEDVP-LAPLQRPSALPSRLDADTIAAHGKLVLGMGDKAIWNRY 230


>gi|13473785|ref|NP_105353.1| DNA polymerase III subunit epsilon [Mesorhizobium loti MAFF303099]
 gi|14024536|dbj|BAB51139.1| DNA polymerase III epsilon chain [Mesorhizobium loti MAFF303099]
          Length = 240

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 104/239 (43%), Positives = 152/239 (63%), Gaps = 4/239 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLDS++DR+IE+G VEL++   T RTF  ++ P GR    EA  +HGI+
Sbjct: 1   MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHEEAQAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L  KP+F+ I  E+  F     A+ +AHNA FD+GF+N E  R+    +DP R++DT
Sbjct: 61  AADLAGKPTFAEIAEEWLTF--TDGAKLVAHNATFDIGFLNVEFGRLGHPVVDPGRVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LC+RYGI  + R+KHGALLDS LL++VYI+++ GG Q      
Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNTKRTKHGALLDSELLAEVYIELI-GGKQAALILD 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245
           +       E  + +  I + +R +PL  R+T+ E   H   + TLG+ A+W +  SS +
Sbjct: 178 SATAPAQGENVRHI-EIIVAERPRPLLPRLTEAERAAHAAMVATLGEKALWLKANSSEK 235


>gi|126730109|ref|ZP_01745921.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37]
 gi|126709489|gb|EBA08543.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37]
          Length = 229

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 102/234 (43%), Positives = 145/234 (61%), Gaps = 7/234 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + +  DRI+EIGAVEL ++  T  T+  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGFEPEQGDRIVEIGAVELFNHVPTGETYHQYINPE-RSMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I  EF  F    +++ + HNA FDV F+NAEL+  N+  L     ID
Sbjct: 60  GDDFLRDKPVFAKIVDEFRTFIG--DSKLVIHNAAFDVKFLNAELRWANRPTLAKDCAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IARRK P S   L++LC+R+GI  S R+ HGALLDS +L++VY++++ GG Q +FG 
Sbjct: 118 TLDIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLELI-GGKQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            +  +       +TV N     R  PL +R+T  E   H   ++ LG+NAIW+R
Sbjct: 177 TSASNTP--SVGETVTNWRPKPRSTPLPSRLTDTEKAAHAAFVEKLGENAIWNR 228


>gi|114706065|ref|ZP_01438968.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506]
 gi|114538911|gb|EAU42032.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506]
          Length = 242

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 111/236 (47%), Positives = 158/236 (66%), Gaps = 4/236 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGLD+  DR+IEIG VEL ++  T +T+  ++ P GRK  P A  +HGI+
Sbjct: 1   MREIVFDTETTGLDNTIDRVIEIGGVELWNHIPTGKTYHQYIRPAGRKVDPAAFDVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFL DKP F  I  EF  FF+  +A+ IAHNA FD+GF+NAELQR+   P++PS +IDT
Sbjct: 61  DEFLLDKPLFEEIADEFVAFFS--DAKLIAHNANFDIGFLNAELQRLRHPPIEPSLVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRK P +   L++LC R+ +  S R KHGALLDS LL+DVYI+++ GG Q + G  
Sbjct: 119 LAMARRKFPMAPASLDALCSRFAVDTSKREKHGALLDSELLADVYIELI-GGRQSSLGLI 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
              D  +   +   P +++  R+ PL  R++++E   H   +++LG  A+W RY+ 
Sbjct: 178 VEADETYASGEAGGP-VAVSAREAPLAPRLSEDEASRHLAFVESLGDEALWWRYLP 232


>gi|254502882|ref|ZP_05115033.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11]
 gi|222438953|gb|EEE45632.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11]
          Length = 239

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 96/243 (39%), Positives = 142/243 (58%), Gaps = 11/243 (4%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I FD ETTGL+ +  DR++EIG VEL+++  T   + V++ P  R     A K+HG+
Sbjct: 1   MREISFDTETTGLNPRGGDRLVEIGGVELINHVPTGNAYHVYINPQ-RDMPEGAFKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++EFL DKP F  +  EF +F    +   + HNA FD+GFIN EL+R  +  +  +++ID
Sbjct: 60  SEEFLSDKPLFEQVADEFLEFVG--DGTLVIHNAAFDMGFINMELERCGRRTISNTQVID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IARRKHPS  N L++LC RYGI  S R KHGALLD+ +L++VY++M+ GG Q     
Sbjct: 118 TLEIARRKHPSGPNSLDALCSRYGIDNSKRVKHGALLDAEILAEVYLEMI-GGKQRALIL 176

Query: 186 KTNEDRFF------KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             +E+           E   + +     R  PL   +  EE   H   +  +G +A+W +
Sbjct: 177 DPDEEDGLIGSGDAGSEPGELGSFKARPRPTPLSALLRGEEFAAHKAFVAGMGDSALWKK 236

Query: 240 YIS 242
           Y+ 
Sbjct: 237 YVG 239


>gi|21328725|gb|AAM48731.1| DNA polymerase III, epsilon subunit [uncultured marine
           proteobacterium]
          Length = 231

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 97/234 (41%), Positives = 147/234 (62%), Gaps = 6/234 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  + DRI+EIGAVEL ++  T RT+  ++ P  R     A  +HG+
Sbjct: 1   MREIVLDTETTGFEPSEGDRIVEIGAVELFNHLPTGRTYHQYINPE-RNMPEAAFNVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++EFL DKP F +I  EF DF    +++ + HNA FD+ F+NAEL  +N+  L   + ID
Sbjct: 60  SEEFLSDKPIFKNIAQEFIDFIA--DSKLVIHNASFDMKFLNAELGWVNRPALPNDQTID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IARRK P S   L++LC+R+GI  S R+ HGALLDS +L++VY++++ GG Q +   
Sbjct: 118 TLAIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLELV-GGRQPDLVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
              E +   +  ++ P+     R KPL +R++ +E   H+  I  LG +A+W +
Sbjct: 177 SGPEVKTSTDGSQS-PDWRPAPRPKPLASRLSDKEKAAHETFIAALGSDALWTK 229


>gi|319407879|emb|CBI81531.1| DNA polymerase III epsilon chain [Bartonella schoenbuchensis R1]
          Length = 235

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 101/234 (43%), Positives = 145/234 (61%), Gaps = 3/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD  +DRIIEIG VE++D   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLDKDSDRIIEIGCVEMVDRYLTKRQFHVYLNPQGVIIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LK++  F  I  EF +F +   A  +AHNA FD+ F+NAEL RINK  +    +IDT
Sbjct: 61  NERLKNEKKFEDIADEFLEFID--GATMVAHNASFDISFLNAELGRINKPLISVDNVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L+IAR+K P   N L+ LCKR+GI  S+R  HGALLD+ +L+DVYI+++ GG Q    F 
Sbjct: 119 LAIARQKFPMGPNSLDVLCKRFGIDNSNRVLHGALLDAEILADVYIELI-GGKQGVLSFD 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            N D     +     + ++  R   L +R++ +E D H   ++ +G  A+W+ +
Sbjct: 178 NNSDLDENIQNGKNVSHTVKTRPHALPSRLSTQEKDMHADLVKKIGDKALWNNF 231


>gi|84684641|ref|ZP_01012542.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Maritimibacter alkaliphilus HTCC2654]
 gi|84667620|gb|EAQ14089.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Rhodobacterales bacterium HTCC2654]
          Length = 230

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 94/234 (40%), Positives = 141/234 (60%), Gaps = 7/234 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D K  DR++EIGAVEL ++  T RT+  ++ P  R     A  +HG+
Sbjct: 1   MREIVLDTETTGFDPKTGDRMVEIGAVELFNHMPTGRTYHQYINPQ-RDMPEGAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++EFLKD P F+ I   F +F    +A+ + HNA FDV F+NAEL    +  +   + ID
Sbjct: 60  SEEFLKDYPVFADIADAFLEFIG--DAKLVIHNASFDVPFLNAELGWCKRRQIPMDQSID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IAR+K P + N L++LC+R+GI  SHR+ HGALLDS +L++VY++++ GG Q +   
Sbjct: 118 TLLIARKKFPGAGNSLDALCRRFGIDNSHRTLHGALLDSEILAEVYLELI-GGRQPDLVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                +     +    +     R + L +RIT+EE   H   ++ LG +A+W +
Sbjct: 177 GGGGSQTSDTTQNE--DWRPRPRPEALPSRITEEERAAHQAFVEKLGASALWSK 228


>gi|260467189|ref|ZP_05813366.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259029042|gb|EEW30341.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 241

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 103/238 (43%), Positives = 146/238 (61%), Gaps = 3/238 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLDS++DR+IE+G VEL++   T RTF  ++ P GR    EA  +HGI+
Sbjct: 1   MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHAEAQAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L  KP+F+ I  E+  F     A+ +AHNA FD+GF+N E  R+    +DP  ++DT
Sbjct: 61  AADLAGKPTFAEIVEEWLAF--TDGAKLVAHNATFDIGFLNVEFGRLGHPVIDPGLVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LC+RYGI  + R+KHGALLDS LL++VYI+++ GG Q      
Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNAKRTKHGALLDSELLAEVYIELI-GGKQAALILD 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
           +      + E      I    R  PL  R+T+ E   H   + TLG+ A+W +  SS 
Sbjct: 178 SATAPAQRGENVRHIEIIAAVRPGPLLPRLTEAERAAHAAMVATLGEKALWLKATSSE 235


>gi|83645320|ref|YP_433755.1| DNA polymerase III subunit epsilon [Hahella chejuensis KCTC 2396]
 gi|83633363|gb|ABC29330.1| DNA polymerase III, epsilon subunit [Hahella chejuensis KCTC 2396]
          Length = 240

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 100/240 (41%), Positives = 144/240 (60%), Gaps = 14/240 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S+  RIIEIG VE++D S T   + V++ P  R+    A ++HGI
Sbjct: 1   MRQIVLDTETTGLETSQGHRIIEIGCVEVIDRSLTGNHYHVYINPE-REVDAGAFEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122
           ++EFL DKP F  +  +F DF +   AE + HNA FDVGFI+ E   +        D   
Sbjct: 60  SNEFLADKPKFKQVAQDFLDFIS--GAELVIHNAAFDVGFIDYEFSLLGAPFGKVSDYCS 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+KHP  +N+L++LCKRYGI  SHR  HGALLDS +L+DVY+ M  G + ++
Sbjct: 118 VVDTLMMARKKHPGQKNNLDALCKRYGIDNSHRDLHGALLDSEILADVYLAMTGGQTSLS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDR 239
                +ED   +EE   V  I+  +R      R ++ EL EH + +  + K A   +W +
Sbjct: 178 LH---SEDGGTEEEASEVRRIN-TQRPSLRVIRASEAELAEHARQLDAVEKAAGFSLWRK 233


>gi|307824649|ref|ZP_07654873.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum
           SV96]
 gi|307734303|gb|EFO05156.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum
           SV96]
          Length = 241

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 100/241 (41%), Positives = 144/241 (59%), Gaps = 17/241 (7%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTGL+  +  RIIEIG VEL++   T + F  ++ P  R     A+++HGIT
Sbjct: 9   RLVVLDTETTGLNPQEGHRIIEIGCVELVNRRLTGKRFHTYINPE-RIIDDGAIEVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSRI 123
           ++FL+DKP F+ +  +F  F   Q+AE + HNA FDVGFIN E  R+N       D S++
Sbjct: 68  NQFLEDKPCFADVVKDFIAFI--QDAELVIHNAPFDVGFINYEFSRLNSQTGTVTDYSKV 125

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL+ AR+KHP  RN L++LCKRYGI  SHR  HGALLD+ +L+DV++ M  G S +  
Sbjct: 126 FDTLTYARKKHPGQRNSLDALCKRYGIDNSHRDLHGALLDAEILADVFLLMTGGQSSL-- 183

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDKTIQTL---GKNAIWD 238
               +E +  +E       I  L  D+P     R T+EEL+ H + ++ +   G   IW+
Sbjct: 184 ---LDEGQGRQEGAAVNREIKHLSADRPALKIIRCTEEELNAHQQRLEAIEKAGGGCIWN 240

Query: 239 R 239
           +
Sbjct: 241 Q 241


>gi|254472171|ref|ZP_05085571.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062]
 gi|211958454|gb|EEA93654.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062]
          Length = 236

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 97/239 (40%), Positives = 148/239 (61%), Gaps = 8/239 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I FD ETTGL+    DR++EIG VEL+++  T RT  +++ P  R    EA ++HG+
Sbjct: 1   MREISFDTETTGLNPLDGDRLVEIGGVELINFIPTGRTCHLYVNPQ-RDMPEEAFRIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +  EF DF    +A  + HNA FD+GFIN EL R NK  +  ++++D
Sbjct: 60  SAEFLSDKPVFADVADEFLDFVG--DARLVIHNAPFDMGFINMELARCNKPKISNTQVLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRK P+    L++LC RYGI  S R  HGALLD+ LL++VY++M  GG Q N G 
Sbjct: 118 TLKLARRKFPTGSVSLDALCSRYGIDNSKRVYHGALLDAELLAEVYLEM-NGGKQKNLGL 176

Query: 186 KTNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
             +++    +   + +    I+  +R  PL   +++EE++ H K I  +  +  W++Y+
Sbjct: 177 MPDDEAIDLDNIGDDQPKQRIAAKQRPVPLSPALSEEEIEAHAKFIAGMKTDPAWNKYL 235


>gi|319404918|emb|CBI78518.1| DNA polymerase III epsilon chain [Bartonella sp. AR 15-3]
          Length = 235

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 104/235 (44%), Positives = 150/235 (63%), Gaps = 4/235 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGL+ ++DRIIEIG +E+++   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNPQGVVIPDEVIAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LKD+ +F  I     DF +  NA  +AHNA FD+GF+NAEL R+NK  +    +IDT
Sbjct: 61  NEHLKDEKNFEDIVDALLDFID--NATIVAHNANFDIGFLNAELGRVNKPLVSSDNVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LSIARR+ P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+++ GG Q  F F 
Sbjct: 119 LSIARRRFPMGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIELI-GGKQGIFSFD 177

Query: 187 TNEDRFFKEEKKTVPNISLLK-RDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             E+      + +      +K R + L  R++K+E + H   I+ +G  A+W+R+
Sbjct: 178 NYENFDVMNVQDSKNVFYTVKMRSQALPQRLSKQEKNMHANLIKKIGDKALWNRF 232


>gi|319406407|emb|CBI80047.1| DNA polymerase III epsilon chain [Bartonella sp. 1-1C]
          Length = 235

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 105/237 (44%), Positives = 150/237 (63%), Gaps = 8/237 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGL+ ++DRIIEIG +E+++   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLNKESDRIIEIGCIEMVNRYLTGRRFHVYLNPQGVVIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LKD+  F  I     DF +   A  +AHNA FD+GF+NAEL+R+NK  ++   +IDT
Sbjct: 61  NERLKDEKKFDDIVDALLDFID--GATIVAHNANFDIGFLNAELERVNKPLINSDNVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LSIARR+ P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+++ GG Q  F F 
Sbjct: 119 LSIARRRFPMGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIELI-GGKQGIFSFD 177

Query: 187 TNED---RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             E       ++ K   P I +  R + L  R++K+E D H   I+ +G  A+W+ +
Sbjct: 178 NYESCDVMNVQDNKNAFPTIKI--RSQALPQRLSKQEKDMHIDLIKKIGDKALWNHF 232


>gi|49474836|ref|YP_032877.1| DNA polymerase III epsilon chain [Bartonella henselae str.
           Houston-1]
 gi|49237641|emb|CAF26821.1| DNA polymerase III epsilon chain [Bartonella henselae str.
           Houston-1]
          Length = 235

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 104/234 (44%), Positives = 147/234 (62%), Gaps = 3/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD + DRIIEIG VE++D   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGRRFHVYLNPQGVIIPDEVVAVHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LK++ SFS I  EF +F N   A  IAHNA FD+GF+NAEL R NK  +    I+DT
Sbjct: 61  NERLKNEKSFSDIADEFLEFIN--GATMIAHNASFDIGFLNAELARANKPLISVDNILDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRK P + N L+ LCKR+GI  SHR  HGALLD+ +L+D+YI+++ GG Q    F 
Sbjct: 119 LAMARRKFPMAPNSLDVLCKRFGIDNSHRVFHGALLDAEILADIYIELI-GGKQGVLVFG 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            N     + E       ++  R + L  R++ +E   H   ++ +G+ A+W+ +
Sbjct: 178 NNGSVHEESENDKNAFSAVKIRPQNLSPRLSVQEKTMHADFVKKMGEKALWNSF 231


>gi|240849687|ref|YP_002971075.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup]
 gi|240266810|gb|ACS50398.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup]
          Length = 235

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 107/235 (45%), Positives = 152/235 (64%), Gaps = 5/235 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD + DRIIEIG VE++D   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGRQFHVYLNPEGVIIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LK++ SFS I  EF +F   + A  IAHNA FD+GFINAEL+R+NK  +    I+DT
Sbjct: 61  NERLKNEKSFSDIVDEFLEFI--KGATMIAHNASFDIGFINAELKRVNKPLISVDNILDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFGF 185
           L++ARRK P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+++ G    + FG 
Sbjct: 119 LAMARRKFPMGPNSLDILCKRFGIDNSHRVLHGALLDAEILADVYIELIGGKQGVLGFGN 178

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           +   D   + +K T   + +  R + L +R++ +E   H   I T+G+ A+W+ +
Sbjct: 179 RRGVDEHIQNDKDTSYAVKI--RPQALPSRLSMQEKRLHADFINTMGEKALWNNF 231


>gi|83950782|ref|ZP_00959515.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius nubinhibens ISM]
 gi|83838681|gb|EAP77977.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius nubinhibens ISM]
          Length = 231

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 98/235 (41%), Positives = 140/235 (59%), Gaps = 7/235 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVEL ++  T  T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPHSGDRIVEIGAVELFNHMPTGETYHQYINPE-RSMPQEAFQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F  I   F DF    +A+ I HNA FD+ F+NAEL  +    +   + ID
Sbjct: 60  GDDFLRDKPVFKRIGQAFLDFIG--DAKLIIHNAAFDMKFLNAELGWMGLPQIPWEQAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IARR+ P S   L++LC+R+ I  S R+ HGALLDS +L++VY++++ GG Q +F  
Sbjct: 118 TLEIARRRFPGSPASLDALCRRFNIDNSSRTLHGALLDSEILAEVYLELI-GGRQPDFSL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           K  E     E  + + N     R  PL +R+T+ E + H   +  +G  AIW +Y
Sbjct: 177 KVVEKAP--EPGEDMGNWRPKPRPTPLPSRLTEAEKNAHATFVGGMGDTAIWRKY 229


>gi|332306364|ref|YP_004434215.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173693|gb|AEE22947.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 235

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 102/241 (42%), Positives = 146/241 (60%), Gaps = 14/241 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D +   RIIEIG VEL++   T  TF V++ P  R    EA+++HGI
Sbjct: 1   MRQIVLDTETTGIDPRQGHRIIEIGCVELVNRRLTGNTFHVYINPQ-RLIEQEAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPS 121
           T+E+L DKP F+ I ++F  F N   A+ + HNA FDVGF++ E  R+     K   D  
Sbjct: 60  TNEYLLDKPVFADIAADFAQFIN--GAQLVIHNAPFDVGFMDHEFDRVASMVGKKTADMC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR+ HP  +N+L++LCKRYGI  SHR  HGALLDS +L+DVY+ M  G + +
Sbjct: 118 TVLDTLEMARQIHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLMMTGGQTAL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238
           N   K+N D   + E     + SL   ++    R T +EL EH+K +  +   G + +W 
Sbjct: 178 NLSGKSNSDGGSQVEPIRRLDPSL---NQLKVLRATADELAEHEKRLDLVTKEGGSCLWR 234

Query: 239 R 239
            
Sbjct: 235 E 235


>gi|319898197|ref|YP_004158290.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73]
 gi|319402161|emb|CBI75687.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73]
          Length = 235

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 105/235 (44%), Positives = 149/235 (63%), Gaps = 4/235 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGL+ ++DRIIEIG +E+++   T R F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNPQGVVIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LKD+  F  I     DF +   A  +AHNA FD+GF+NAEL+R+NK  +  + +IDT
Sbjct: 61  NERLKDEKKFDDIVDALLDFID--GATIVAHNANFDIGFLNAELERVNKPLVSINHVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L+IARR+ P+  N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+++ GG Q  FGF 
Sbjct: 119 LAIARRRFPTGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIELI-GGKQGIFGFD 177

Query: 187 TNEDRFFKEEKKTVPNISLLK-RDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             ED      +         K R  PL  R++K+E D H   I+ +G  A+W+ +
Sbjct: 178 NCEDFDVMSVQDGKNAFHTTKIRFHPLPQRLSKQEKDMHANLIKKIGDKALWNHF 232


>gi|254485580|ref|ZP_05098785.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101]
 gi|214042449|gb|EEB83087.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101]
          Length = 228

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 92/233 (39%), Positives = 149/233 (63%), Gaps = 8/233 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL+ +  T +T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHMATGKTYHQYINPE-RGMPDEAFQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I  +F DF    +++ I HNA FD+ F+NAEL+ +    +  ++ +D
Sbjct: 60  GDDFLRDKPKFAQIGQDFLDFIG--DSKLIIHNAAFDIKFLNAELKWMGLPQIPWAQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR++ P S   L++LC+R+ I  + R+ HGALLDS +L++VY++++ GG Q +FG 
Sbjct: 118 TLAIARKRFPGSPASLDALCRRFNIDNTSRTLHGALLDSEILAEVYLELI-GGRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
               ++  ++E  T  + +   R  PL +RI+++E   H + +  LG  A+W 
Sbjct: 177 S---NQPQRKEGDTSVDWTPKPRPNPLPSRISQDEAAAHAEFVSKLGDGAVWK 226


>gi|163867311|ref|YP_001608505.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476]
 gi|161016952|emb|CAK00510.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476]
          Length = 235

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 107/234 (45%), Positives = 149/234 (63%), Gaps = 3/234 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD + DRIIEIG VE++D   T   F V+L P G     E + +HG+T
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGCQFHVYLNPEGVIIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LK++ SFS I  EF +F N   A  IAHNA FD+GFINAEL+R+NK  +    IIDT
Sbjct: 61  NERLKNEKSFSDIVDEFLEFIN--GATMIAHNASFDIGFINAELKRVNKPLISVDNIIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRK P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+++ GG Q   GF 
Sbjct: 119 LAMARRKFPMGPNSLDILCKRFGIDNSHRVLHGALLDAEILADVYIELI-GGKQGVLGFD 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
              +     +  T  + ++  R + L +R++ +E   H   I  +G+ A+W+ +
Sbjct: 178 NKRNLDEHIQNDTDMSYAVKFRPQALPSRLSAQEKKLHADFINKMGEKALWNTF 231


>gi|118591451|ref|ZP_01548849.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM
           12614]
 gi|118436123|gb|EAV42766.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM
           12614]
          Length = 237

 Score =  252 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 100/239 (41%), Positives = 150/239 (62%), Gaps = 9/239 (3%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I FD ETTGL+ +  DR++EIG VEL+++  T +++ V++ P  R    EA ++HG+
Sbjct: 1   MREISFDTETTGLNPRGGDRLVEIGGVELINHVATGKSYHVYINPQ-RDMPEEAFRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F  +  EF +F    +A  + HNA FD+GFIN EL+R  +  +  S+++D
Sbjct: 60  SVEFLSDKPLFEHVADEFLEFVG--DATLVIHNAAFDMGFINMELERAGRRTIPNSQVLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHPS  N L++LC RYGI  S R KHGALLD+ +L++VY++++ GG Q   G 
Sbjct: 118 TLDLARRKHPSGPNSLDALCSRYGIDNSKRIKHGALLDAEILAEVYLELI-GGRQTALGL 176

Query: 186 KTNEDRFFKE----EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            T+E+         E   +   +  KR  PL   + + EL+ H   I+ +G +AIW +Y
Sbjct: 177 ITDEEESSSASASFEPGELGTFNARKRPTPLQRLLQESELEAHKAFIEGMGDSAIWSKY 235


>gi|109898679|ref|YP_661934.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
           T6c]
 gi|109700960|gb|ABG40880.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
           T6c]
          Length = 235

 Score =  252 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 99/241 (41%), Positives = 145/241 (60%), Gaps = 14/241 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D +   RIIEIG VELL+   T  TF V++ P  R    EA+++HGI
Sbjct: 1   MRQIVLDTETTGIDPRQGHRIIEIGCVELLNRRLTGNTFHVYVNPQ-RLIEQEAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPS 121
           T+E+L DKP F+ + ++F  F +   A+ + HNA FDVGF++ E  R+     K   D  
Sbjct: 60  TNEYLLDKPLFADVAADFVKFIS--GAQLVIHNAPFDVGFMDHEFARVAAMAGKKTSDMC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR+ HP  +N+L++LCKRYGI  SHR  HGALLDS +L+DVY+ M  G + +
Sbjct: 118 TVLDTLEMARQIHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLMMTGGQTDL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238
           N   K+N D   + E+         + ++    R T +EL EH+K +  +   G + +W 
Sbjct: 178 NLSGKSNSDGGSQVERI---RRLDPQLNQLKVLRATADELVEHEKRLDLVNKEGGSCLWR 234

Query: 239 R 239
            
Sbjct: 235 E 235


>gi|292493431|ref|YP_003528870.1| DNA polymerase III subunit epsilon [Nitrosococcus halophilus Nc4]
 gi|291582026|gb|ADE16483.1| DNA polymerase III, epsilon subunit [Nitrosococcus halophilus Nc4]
          Length = 242

 Score =  252 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 92/246 (37%), Positives = 138/246 (56%), Gaps = 12/246 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ K   RIIEIG VEL++  +T +TF  +L P  R+    ALK+HG+
Sbjct: 1   MRQIILDTETTGLEPKEGHRIIEIGGVELINRRRTGQTFHCYLNPE-RRVDEGALKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122
           ++EFL DKP F  +  EF  F  E  AE + HNA FDVGF++ EL  +           +
Sbjct: 60  SNEFLSDKPRFVEVAEEFLAFIRE--AELVIHNAPFDVGFLDHELSLLGSQWGKVSLYCQ 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR++HP  +N L++LCKRYG+  S R  HGALLD+ +L+ VY+ M  G + ++
Sbjct: 118 VLDTLVLARQRHPGQKNSLDALCKRYGVDNSRRDLHGALLDAEILAGVYLAMTGGQASLS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
                 ED   +  +     ++  KR      R ++EE   H   +  +    G   +W 
Sbjct: 178 LRGYGGEDSQSQPGEGKYRPVA-AKRPPLKVVRASEEERSAHQARLAAIDKVSGGACLWH 236

Query: 239 RYISSN 244
           +  S +
Sbjct: 237 QIESPD 242


>gi|114762190|ref|ZP_01441658.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Pelagibaca bermudensis HTCC2601]
 gi|114545214|gb|EAU48217.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Roseovarius sp. HTCC2601]
          Length = 229

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 140/234 (59%), Gaps = 7/234 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + +  DRI+EIGAVEL ++  T  T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFEPETGDRIVEIGAVELYNHVPTGETYHQYINPE-RSMPQEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I  EF +F    +++ + HNA FDV F+NAEL    +  L     +D
Sbjct: 60  GDDFLRDKPLFAQIVDEFLEFIG--DSKLVIHNATFDVKFLNAELGWSKRPLLPKDCAVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IARRK P S   L++LC+R+GI  S R+ HGALLDS +L+DVY++++ GG Q +   
Sbjct: 118 TLAIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILADVYLELI-GGKQPDLVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                R          N    +R +PL  RIT EE   H   ++ LG+ A+W R
Sbjct: 177 SPV--RQGGGSDGGDDNWRPQRRPEPLSPRITDEEKAAHAAFVEKLGEAALWSR 228


>gi|90420992|ref|ZP_01228896.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334770|gb|EAS48546.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 239

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 111/239 (46%), Positives = 153/239 (64%), Gaps = 6/239 (2%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+IVFD ETTGLD   +R+IEIG VEL ++  T + +  F+ P GRK  P A  +HGI+
Sbjct: 1   MREIVFDTETTGLDPDVERVIEIGGVELWNHIPTGKNYHAFIRPAGRKVDPAAFDVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+FL DKP FS I  EF +FF+   A+ IAHNA FDV F+NAEL+RI++ P+DPS +IDT
Sbjct: 61  DDFLADKPLFSEIADEFLEFFS--GAKLIAHNAAFDVRFLNAELKRIDQPPIDPSVVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +ARRK P +   L++LC R+ +  S R KHGALLDS LL++VYI+++ GG Q   G  
Sbjct: 119 LPMARRKFPMAPATLDALCSRFSVDTSRRDKHGALLDSELLAEVYIELI-GGRQAALGLA 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245
             ED     +        +  R  PL +R++++E+  H   + TLG  AIW  Y+   +
Sbjct: 178 VEEDAHEDADGNV---WRIAPRPVPLPSRLSQDEIVRHRAFVSTLGDEAIWWNYLERPE 233


>gi|319403493|emb|CBI77072.1| DNA polymerase III epsilon chain [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 235

 Score =  250 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 101/235 (42%), Positives = 147/235 (62%), Gaps = 4/235 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGL+ ++DRIIEIG +E+++   T R F V+L P       E + +HG+T
Sbjct: 1   MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNPQDVIIPDEVVAIHGLT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E LKD+  F  I     DF +  +A  +AHNA FD+GF+NAEL+R+NK  ++   +IDT
Sbjct: 61  NERLKDEKKFDDIVDALLDFID--DATIVAHNANFDIGFLNAELERVNKPLINSDNVIDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LSIARR+ P   N L+ LCKR+GI  SHR  HGALLD+ +L+DVYI+++ GG Q  F F 
Sbjct: 119 LSIARRRFPMGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIELI-GGKQGIFSFD 177

Query: 187 TNE-DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             E       +       ++  R + L  R++K+E D H   I+ +G  A+W+ +
Sbjct: 178 NYESCDVMNVQDNKNAFYTIKTRSQALPQRLSKQEKDMHADLIKKIGDKALWNHF 232


>gi|163745117|ref|ZP_02152477.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45]
 gi|161381935|gb|EDQ06344.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45]
          Length = 229

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 92/234 (39%), Positives = 141/234 (60%), Gaps = 8/234 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL+++  T  T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMNHMATGETYHQYINPE-RGMPEEAFQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I   F DF     ++ I HNA FD+ F+NAEL+ +    +   + +D
Sbjct: 60  GDDFLRDKPKFAQIGKSFLDFIGT--SKLIIHNAAFDIKFLNAELRWMGLPQIPWEQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IAR++ P S   L++LC+R+GI  + R+ HGALLDS +L++VY++++ GG Q +F  
Sbjct: 118 TLEIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILAEVYLELI-GGRQPDFAL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            +  +R   E        +   R  PL +R+T+ E   H   I  LG + +W +
Sbjct: 177 SSAPERKSGEPDT---RWTPKARPNPLPSRLTEAEAAAHADFIGKLGDDVLWKQ 227


>gi|159045988|ref|YP_001534782.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
 gi|157913748|gb|ABV95181.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
          Length = 230

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 88/233 (37%), Positives = 141/233 (60%), Gaps = 7/233 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  + DR++EIG VEL ++  T R +  ++ P  R     A ++HG+
Sbjct: 1   MREIVLDTETTGFEPSEGDRLVEIGGVELFNHVPTGRVYHQYINPQ-RSMPQSAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL DKP F+ +   F DF    +A+ + HNA FD+ F+NAEL  + K  L   + ID
Sbjct: 60  GDDFLADKPLFAEVAEAFLDFIG--DAKLVIHNAAFDMKFLNAELGWLGKPLLPMEQAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IARRK P S   L++LC+R+G+  S R KHGALLDS +L++VY++++ G      G 
Sbjct: 118 TLAIARRKFPGSPASLDALCRRFGVDNSAREKHGALLDSEILAEVYLELIGGQQP---GL 174

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           + +  +    +     ++    R  PL +R++++E   H   +++LG++A+W 
Sbjct: 175 ELSSVQTPSTQNVDNGHLRARPRPAPLPSRVSEKEKAAHAAFVESLGQSALWR 227


>gi|163738000|ref|ZP_02145416.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           BS107]
 gi|163742604|ref|ZP_02149990.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161384189|gb|EDQ08572.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161388616|gb|EDQ12969.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           BS107]
          Length = 245

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 94/246 (38%), Positives = 145/246 (58%), Gaps = 19/246 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVELL++  T  TF V++ P  R    +A K+HGI
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPQ-RSMPQDAFKVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             +DKP F+ +  +F DF   ++++ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQQPGPGAVTLRDKPVFAKVGQKFLDFV--RDSKMVIHNAAFDMKFLNAELDW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    L   + +DTL+IAR++ P S   L++LC+R+ I  S+R+ HGALLDS +L+DVY+
Sbjct: 118 MGLPKLPMDQAVDTLAIARKRFPGSPATLDALCRRFNIDNSNRTLHGALLDSEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++ GG Q +FG   + D+       T  +     R  PL +R+T++E + H   +  +G
Sbjct: 178 ELI-GGRQPDFGLSASNDKSSSGSVVT-DDWRPTARPSPLPSRLTEQEQEAHANFVAKMG 235

Query: 233 KNAIWD 238
             A+W+
Sbjct: 236 DAALWN 241


>gi|260429270|ref|ZP_05783247.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
 gi|260419893|gb|EEX13146.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
          Length = 230

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 96/234 (41%), Positives = 144/234 (61%), Gaps = 6/234 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + +  DRI+EIGAVEL ++  T +T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFEPETGDRIVEIGAVELYNHVPTGKTYHQYINPE-RSMPNEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I  +F +F    +A+ + HNA FDV F+NAEL+   +  L     ID
Sbjct: 60  GDDFLRDKPLFAQIVDDFLEFIG--DAKLVIHNAAFDVKFLNAELRWSKRPQLPRDCAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IARRK P S   L++LC+R+GI  S R+ HGALLDS +L+DVY++++ GG Q +   
Sbjct: 118 TLEIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILADVYLELI-GGKQPDLVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            T   +    +  +  +    +R   L +R+++EE   H   ++ LG NA+W R
Sbjct: 177 -TPAGQKSGADSASAGDWRPQRRAVALPSRLSEEEKAAHAAFVEKLGANALWTR 229


>gi|332141113|ref|YP_004426851.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551135|gb|AEA97853.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 239

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 91/240 (37%), Positives = 137/240 (57%), Gaps = 16/240 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D K   RIIEIG VE+++   T   F V++ P GR    EA+++HGI
Sbjct: 1   MRQIVLDTETTGIDPKEGHRIIEIGCVEVVNRRLTGNHFHVYINP-GRHIEQEAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPS 121
           T+EFL DKP+F+ +  EF +F   + A+ + HNA FDVGF++ E                
Sbjct: 60  TNEFLTDKPTFAQVAQEFVNFI--KGAQLVIHNAPFDVGFMDHEFGMEPSTKGVITNQIC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL++AR+ HP  +N+L++LCKRYGI  SHR+ HGALLD+ +L+DVY+ M  G +++
Sbjct: 118 DVLDTLTLARQMHPGQKNNLDALCKRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTKL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238
                        E   T       K +K    + + +EL +H+  +  +   G   +W 
Sbjct: 178 KLA-----SSGGSETDSTAIRRVQRKTNKLKVIKASADELTQHEARLDIVEKAGGKCLWR 232


>gi|262276480|ref|ZP_06054289.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
 gi|262220288|gb|EEY71604.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
          Length = 247

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 96/252 (38%), Positives = 148/252 (58%), Gaps = 17/252 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           ++ +  R IV D ETTG++       +  RIIEIGAVE+++   T R F V++ P+ R+ 
Sbjct: 1   MKASYDRIIVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REI 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114
            PEA+ +HGITDEFL+DKPS++ I +EF +F   + AE +AHNA FD GF++ E Q ++ 
Sbjct: 60  DPEAISVHGITDEFLRDKPSYADIHAEFLEFI--KGAELVAHNAPFDTGFMDHEFQMLDP 117

Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+
Sbjct: 118 SIGKTGDFCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G + + FG   + D   ++              K    R + +EL EH+  +  + 
Sbjct: 178 LMTGGQTTLKFGGSESSD---QDSGGEAIRRVEAGTKKLKIIRASADELKEHEAQLDVIE 234

Query: 233 KN--AIWDRYIS 242
           K    +W +  S
Sbjct: 235 KKGSCLWRQQES 246


>gi|149204383|ref|ZP_01881350.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035]
 gi|149142268|gb|EDM30315.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035]
          Length = 231

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 96/235 (40%), Positives = 139/235 (59%), Gaps = 6/235 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + +  DRI+EIGAVEL ++  T RTF  ++ P  R     A  +HG+
Sbjct: 1   MREIVLDTETTGFEPESGDRIVEIGAVELYNHMPTGRTFHKYINPQ-RAMPEAAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I  EF DF   Q+A  + HNA FD+ F+NAEL  +    L   + +D
Sbjct: 60  GDDFLRDKPLFAEIAQEFLDFV--QDARLVIHNAAFDMKFLNAELGWLKLPQLPWDQAVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR+K P S   L++LC+R+ I  S R+ HGALLDS +L++VY++++ GG Q +F  
Sbjct: 118 TLAIARKKFPGSPASLDALCRRFQIDNSARTLHGALLDSEILAEVYLELI-GGRQPDFVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            T           T  +     R  PL +R+T  E D H   +  +G  A+W ++
Sbjct: 177 ATGPTAKSGGSTDTA-HWRPQPRPTPLASRLTATENDAHQAFVAKMGDAALWRKF 230


>gi|330829021|ref|YP_004391973.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565]
 gi|328804157|gb|AEB49356.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565]
          Length = 244

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 97/252 (38%), Positives = 146/252 (57%), Gaps = 21/252 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M      R+I+ D ETTG+++         RIIEIG VE+++   T   + V++ P+ R 
Sbjct: 1   MNTPQLNRQIILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTGNHYHVYIKPD-RL 59

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             PEA+++HGITDEFL+DKPSFS I  EF +F   + AE IAHNA FDV F++ E  ++ 
Sbjct: 60  VDPEAIQVHGITDEFLRDKPSFSQIADEFLEFI--RGAELIAHNAPFDVSFMDYEFSKLG 117

Query: 115 KDPL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +    D   I DTL++AR   P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+
Sbjct: 118 LNFKTADICTITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTI-- 228
            M  G +++N   ++NE+   ++      +I  L+ ++P     R   E    H+  +  
Sbjct: 178 LMTGGQTKLNLATESNENENNQDT-----SIRRLESNRPAIKVVRACAEVQALHEARLDL 232

Query: 229 -QTLGKNAIWDR 239
            Q  G + +W +
Sbjct: 233 VQKKGGSCLWRQ 244


>gi|192288734|ref|YP_001989339.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           TIE-1]
 gi|192282483|gb|ACE98863.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 232

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 102/240 (42%), Positives = 144/240 (60%), Gaps = 11/240 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T RT+  +L P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHQYLNPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +  EF +F    +A  + HNA FD+GFINAEL R+++ P+   R++D
Sbjct: 60  SSEFLADKPLFAHVADEFLEFIG--DAPLVIHNASFDIGFINAELSRLSRAPVPRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFG 184
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++    SQ+   
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILA 177

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
               E      E +        +R  PL  R+T+ +L+ H   I T+G+ AIW  Y+ + 
Sbjct: 178 DVPAEVVGAASENR------RRQRPAPLPNRLTEADLEAHRAFIATMGEKAIWPDYLPAG 231


>gi|59712542|ref|YP_205318.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114]
 gi|59480643|gb|AAW86430.1| DNA polymerase III epsilon subunit [Vibrio fischeri ES114]
          Length = 243

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 95/240 (39%), Positives = 140/240 (58%), Gaps = 16/240 (6%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IV D ETTG++       +  RI+EIGAVE+++   T   F V++ P+ R    EA+ 
Sbjct: 10  RIIVLDTETTGMNFSGGPVYEGHRIVEIGAVEIINRKLTGNHFHVYIKPD-RLIDLEAID 68

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118
           +HGITDEFL DKP +  I  EF +F   + AE +AHNA FDVGF++ E  ++NK      
Sbjct: 69  VHGITDEFLYDKPEYKDIHDEFLEFI--KGAELVAHNAPFDVGFMDYEFSKLNKLIGTTD 126

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              +I DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 127 QYCKITDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 186

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           + ++F    N     +E  K + +     R      R T +EL+ H+K +  +G   +W 
Sbjct: 187 TSLSFSSGENSSDSDEETIKRLNS----GRKGLKVLRATADELEAHEKRLDIVGDACLWR 242


>gi|269101978|ref|ZP_06154675.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161876|gb|EEZ40372.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 241

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 95/247 (38%), Positives = 144/247 (58%), Gaps = 17/247 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R IVFD ETTG++      +  RIIEIGAVE+++   T  TF V++ P+ R   
Sbjct: 1   MKATNERIIVFDTETTGMNMSGPHYEGHRIIEIGAVEIINRKLTGNTFHVYIKPD-RAID 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA+++HGITDEFL  KP+++ I  EF DF   Q AE +AHNA FD+GF++ E +++   
Sbjct: 60  PEAIEVHGITDEFLVGKPTYAEIHQEFMDFI--QGAELVAHNAPFDIGFMDYEFRKLGLK 117

Query: 117 PL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            L   +  ++ DTL +A+R  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 118 DLKTDEMCKVTDTLDMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLM 177

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           M  G + +      +     + E + + +     R      R + +E+  H+  +  +GK
Sbjct: 178 MTGGQTSLQLSSGESSAAGAENEIRRLTS----GRKALKVIRASADEIAAHEDRLDLIGK 233

Query: 234 NA--IWD 238
            A  IW 
Sbjct: 234 KADVIWR 240


>gi|27375751|ref|NP_767280.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27348889|dbj|BAC45905.1| DNA polymerase III epsilon chain [Bradyrhizobium japonicum USDA
           110]
          Length = 239

 Score =  248 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 96/239 (40%), Positives = 138/239 (57%), Gaps = 10/239 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T +T+ V++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEMFNRMPTGQTYHVYINPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL  KP F  +   F +F    +A  + HNA FD+ FINAEL RI +  +   +++D
Sbjct: 60  SAEFLSTKPVFHEVADAFLEFIG--DAPLVIHNASFDISFINAELDRIKRAAIPREQLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFG 184
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VY+ ++    SQ+   
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQSQLLLA 177

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
            +  E R          +    +R  PL  RI+  E + H   I TLG  AIW+ ++ +
Sbjct: 178 SEAEEIRINAAG-----DTPRRQRPTPLAPRISDAEREAHRAFIATLGDKAIWNEFLPA 231


>gi|326796075|ref|YP_004313895.1| DNA polymerase III subunit epsilon [Marinomonas mediterranea MMB-1]
 gi|326546839|gb|ADZ92059.1| DNA polymerase III, epsilon subunit [Marinomonas mediterranea
           MMB-1]
          Length = 235

 Score =  248 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 94/238 (39%), Positives = 136/238 (57%), Gaps = 10/238 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTG+D K   RIIEIG VE++    T R F V++ P+ R+   EA ++HGI
Sbjct: 1   MRQVVLDTETTGIDPKQGHRIIEIGCVEMIGRKLTKRHFHVYINPD-REVEEEAFQVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           ++EFL DKP F  I  EF DF   + AE I HNA FDVGF++ E   +   P   D   I
Sbjct: 60  SNEFLADKPRFHEIAQEFLDFI--RGAELIIHNAPFDVGFMDHEFSMLGNFPKTRDVCEI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L  AR+KHP ++N+L++LC+RYGI  SHR  HGALLDS +L+DVY+ M  G + +  
Sbjct: 118 FDSLVFARKKHPGAKNNLDALCRRYGIDNSHRELHGALLDSEILADVYLLMTGGQTSLGL 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
                 +    +    +  +S   R      R  + E+  H++ +  + K    ++W 
Sbjct: 178 SMNDGSEGGDSDNVGEIRRLSP-DRPMLKVLRANETEMAAHEERLDLIDKKSGQSLWR 234


>gi|39933378|ref|NP_945654.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
           CGA009]
 gi|39653003|emb|CAE25745.1| putative DNA polymerase III epsilon chain [Rhodopseudomonas
           palustris CGA009]
          Length = 232

 Score =  248 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 102/240 (42%), Positives = 143/240 (59%), Gaps = 11/240 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T RT+  +L P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHQYLNPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +  EF +F    +A  + HNA FD+GFINAEL R+++ P+   R++D
Sbjct: 60  SSEFLADKPLFAHVADEFLEFIG--DAPLVIHNASFDIGFINAELSRLSRAPVPRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFG 184
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++    SQ+   
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILA 177

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
               E      E +        +R  PL  R+T  +L+ H   I T+G+ AIW  Y+ + 
Sbjct: 178 DVPVEVAGAASESR------RRQRPAPLPNRLTDADLEAHRTFIATMGEKAIWPDYLPAG 231


>gi|119385539|ref|YP_916595.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119375306|gb|ABL70899.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 239

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 97/241 (40%), Positives = 146/241 (60%), Gaps = 5/241 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVEL+++  T RTF V++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPDTGDRIVEIGAVELMNHLPTGRTFHVYINPE-RPMPQEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I ++F  F  + +A+ + HNA FD+ F+NAEL+ +    +  SR +D
Sbjct: 60  GDDFLRDKPKFAEIAADFVAFIGD-DAKLVIHNASFDMKFLNAELRMVGHATMPYSRAVD 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IAR   P ++N L++LC+R+ I  S+R+ HGALLDS LL++VY+ +  GG Q     
Sbjct: 119 TLEIARSMFPGAQNSLDALCRRFRIDNSNRTLHGALLDSELLAEVYLAL-RGGRQPGLVL 177

Query: 186 KTNE-DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
           ++           +        +R +PL  RIT+ E + H   +  +G+ A+W RY  +N
Sbjct: 178 ESGPMHGGTGTGAQAEGGTPRGQRPRPLAPRITEAEAEAHAAFVAKMGEKAVWLRYGDAN 237

Query: 245 Q 245
            
Sbjct: 238 H 238


>gi|332993503|gb|AEF03558.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2]
          Length = 238

 Score =  247 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 91/240 (37%), Positives = 141/240 (58%), Gaps = 16/240 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D K   R+IEIG VEL++   T   F V++ P GR+   EA+ +HGI
Sbjct: 1   MRQIVLDTETTGIDPKEGHRVIEIGCVELVNRKLTGNHFHVYINP-GRQIEQEAIDVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPS 121
           T+EFL DKP+F  +  +F +F   + A+ + HNA FDVGF++ E     +       D  
Sbjct: 60  TNEFLTDKPTFRDVAEDFVNFI--RGAQLVIHNAPFDVGFMDHEFGMEPKTRGVITKDIC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL++AR+ HP  +N+L++LCKRYGI  SHR  HGALLD+ +L+DVY+ M  G +++
Sbjct: 118 SVLDTLAVARKMHPGQKNNLDALCKRYGIDNSHRELHGALLDAEILADVYLLMTGGQTKL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238
           N   K + +      ++   N      +K    + + +EL +H+  +  +   G   +W 
Sbjct: 178 NLASKGSGENQSDALRRLNRN-----GNKLKVIKASADELAQHESRLDIVEKAGGKCLWR 232


>gi|126738511|ref|ZP_01754216.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6]
 gi|126720310|gb|EBA17016.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6]
          Length = 242

 Score =  247 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/247 (37%), Positives = 147/247 (59%), Gaps = 20/247 (8%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVEL ++  T +T+  ++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELFNHMPTGKTYHEYINPE-RSMPHEAFGVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             +DKP F+ +   F DF   Q+++ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQQPEKGQVTLRDKPVFAKVGQSFLDFV--QDSKLVIHNASFDMKFLNAELDW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    L  ++ IDTL++AR++ P +   L++LC+R+ I  S+R+ HGALLDS +L++VY+
Sbjct: 118 MGLPKLPLNQAIDTLAVARKRFPGAPATLDALCRRFQIDNSNRTLHGALLDSEILAEVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++ GG Q +FG  T+      +E +   +    +R  PL +R+T+EEL  HD  ++ +G
Sbjct: 178 ELI-GGRQPDFGLSTS--TSGSKEGQVAEDWRPTQRATPLPSRLTQEELSAHDAFVEKMG 234

Query: 233 KNAIWDR 239
             A+W +
Sbjct: 235 DAALWRQ 241


>gi|260772249|ref|ZP_05881165.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260611388|gb|EEX36591.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 246

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/243 (37%), Positives = 139/243 (57%), Gaps = 18/243 (7%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++       +  RIIEIGAVE++D   T R F V+L P+ R+  P+A++
Sbjct: 11  RIVVLDTETTGMNFEGGPHYEGHRIIEIGAVEIIDRKLTGRHFHVYLKPD-REIQPQAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118
           +HGITD FL DKP +  +  EF DF   + AE +AHNA FDVGF++ E  ++N       
Sbjct: 70  VHGITDAFLVDKPQYKEVHQEFLDFI--KGAELVAHNASFDVGFMDYEFAKVNPAIGKTE 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              +I DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 QYCKITDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
           + + F   +          + V      +R      R + +E++ H + +  + K+   +
Sbjct: 188 TSLQFSASSQSGEPAGSFVQRVQG----ERKNLKVLRASADEIEAHQQRLDVVEKSGICL 243

Query: 237 WDR 239
           W +
Sbjct: 244 WRQ 246


>gi|260775260|ref|ZP_05884157.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608441|gb|EEX34606.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 246

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/246 (36%), Positives = 138/246 (56%), Gaps = 18/246 (7%)

Query: 5   NKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           N  R +V D ETTG++       +  RIIEIGAVE+++   T R F V++ P+ R+  P+
Sbjct: 8   NHNRIVVLDTETTGMNREGGPHYQGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPD 66

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---K 115
           A+++HGITDEFL DKP +  +  EF +F   + AE +AHNA FD GF++ E   ++    
Sbjct: 67  AVEVHGITDEFLVDKPEYQDVHKEFLEFI--KGAELVAHNAPFDTGFMDYEFNMLDPGIG 124

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M 
Sbjct: 125 KTDDYCKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMT 184

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK-- 233
            G + + F     +     E  K         R      R T +EL+ H   +  + K  
Sbjct: 185 GGQTSLQFNSGNADGNVGGESIKRAAG----GRKSLKVIRATADELEAHQNRLDLVEKSG 240

Query: 234 NAIWDR 239
           + +W +
Sbjct: 241 SCLWRQ 246


>gi|316931718|ref|YP_004106700.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
           DX-1]
 gi|315599432|gb|ADU41967.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           DX-1]
          Length = 232

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 101/240 (42%), Positives = 143/240 (59%), Gaps = 11/240 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T RT+  +L P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHRYLNPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +  EF +F  +     + HNA FD+GFINAEL R+++ P+   R++D
Sbjct: 60  SAEFLADKPLFAQVADEFLEFIGDD--PLVIHNASFDIGFINAELSRLSRAPVPRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFG 184
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++    SQ+   
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILA 177

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
               E      E +        +R  PL  R+T  +L+ H   I T+G+ AIW  Y+++ 
Sbjct: 178 DVPAEVVGAASENR------RRQRPAPLPNRLTDADLEAHRAFIATMGEKAIWPDYLAAG 231


>gi|254511557|ref|ZP_05123624.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           KLH11]
 gi|221535268|gb|EEE38256.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           KLH11]
          Length = 240

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 98/247 (39%), Positives = 145/247 (58%), Gaps = 22/247 (8%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL ++  T  T+ V++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELWNHVATGETYHVYINPE-RGMPDEAFGVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             KDKP F+ +   F DF    +A+ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLENPRPPEKGEVTLKDKPVFAKVGQGFRDFVG--DAQLVIHNASFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    +  ++ IDTL+IAR++ P S   L++LC+R+GI  S+R  HGALLDS +L++VY+
Sbjct: 118 MGVPLIPMAQAIDTLAIARKRFPGSPASLDALCRRFGIDNSNRVLHGALLDSEILAEVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++ GG Q +FG  T+         +  P      R  PL +RIT++E   H K ++ LG
Sbjct: 178 ELI-GGRQPDFGLSTSASNAAGGGDEWRPT----ARPTPLSSRITEDERAAHQKFVEGLG 232

Query: 233 KNAIWDR 239
           ++A+W R
Sbjct: 233 ESALWTR 239


>gi|254477303|ref|ZP_05090689.1| DNA polymerase III, epsilon subunit [Ruegeria sp. R11]
 gi|214031546|gb|EEB72381.1| DNA polymerase III, epsilon subunit [Ruegeria sp. R11]
          Length = 244

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 97/246 (39%), Positives = 144/246 (58%), Gaps = 20/246 (8%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVELL++  T  TF V++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPE-RSMPAEAFGVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             +DKP F+ +   F DF   ++++ I HNA FD+ F+N EL+R
Sbjct: 60  GPDLLEPPQQPAPGAVTLRDKPVFAKVGKAFVDFV--RDSKMIIHNASFDMKFLNYELER 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    L   + +DTL+IAR++ P S   L++LC+R+ I  S+R+ HGALLDS +L+DVY+
Sbjct: 118 MGLAALPMDQAVDTLAIARKRFPGSPATLDALCRRFNIDNSNRTLHGALLDSEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++ GG Q +FG  T +    K     V +     R  PL  RIT++E + H   +  +G
Sbjct: 178 ELI-GGRQPDFGLSTAKSE--KSSTVQVDDWRPTARPSPLPPRITEQEKEAHAAFVAKMG 234

Query: 233 KNAIWD 238
           + A+W+
Sbjct: 235 EGALWN 240


>gi|117619304|ref|YP_856106.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560711|gb|ABK37659.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 244

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/250 (38%), Positives = 141/250 (56%), Gaps = 17/250 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M      R+I+ D ETTG+++         RIIEIG VE+++   T   F V++ P+ R 
Sbjct: 1   MNTPQLNRQIILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTGNHFHVYIKPD-RL 59

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             PEA+++HGITDEFL+DKPSFS I  EF +F   + AE IAHNA FDV F++ E  ++ 
Sbjct: 60  VDPEAIQVHGITDEFLRDKPSFSQIADEFIEFI--RGAELIAHNAPFDVSFMDYEFGKLG 117

Query: 115 KDPL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +    D   I DTL++AR   P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+
Sbjct: 118 LNFKTADICGITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---Q 229
            M  G +++N   +++E+   +  + T        R      R + E    H+  +   Q
Sbjct: 178 LMTGGQTKLNLATESSEN---ESNQDTSIRRLESNRPPLKVIRASAEIEAVHEARLDLVQ 234

Query: 230 TLGKNAIWDR 239
             G   +W +
Sbjct: 235 KKGGACLWRQ 244


>gi|182680101|ref|YP_001834247.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635984|gb|ACB96758.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 236

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 103/240 (42%), Positives = 147/240 (61%), Gaps = 9/240 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  +  RIIEIG +E+L    T + F V++ P  R    +A+++HGI
Sbjct: 1   MREIVLDTETTGLDPAEGHRIIEIGCIEILHTIPTGQIFHVYIDPQ-RDIPEDAVRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL  KP F+ I SEF  F    +A+ +AHNA FD+ F+NAEL  +  +P+D  R++D
Sbjct: 60  TAEFLAGKPVFADIASEFLAFIG--DAKLVAHNAAFDMRFLNAELGLLGLEPIDSERVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++ARR+HP + N L++LC RYGI  + R+KHGALLDS +L+DVY +++ GG Q    F
Sbjct: 118 TLALARRRHPGASNSLDALCNRYGIDNTRRTKHGALLDSEILADVYAELL-GGRQAALTF 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245
           +T          +T       +R  PL + ++ +E D H   I  LG  AIW  Y+   +
Sbjct: 177 ETATALRQDNTHQT----PFRQRPVPLESALSSQERDAHRAFIAKLGDKAIWVSYLPQPE 232


>gi|84514924|ref|ZP_01002287.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Loktanella vestfoldensis SKA53]
 gi|84511083|gb|EAQ07537.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Loktanella vestfoldensis SKA53]
          Length = 228

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 96/234 (41%), Positives = 139/234 (59%), Gaps = 8/234 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  + DRI+EIGAVEL+ +  T RT+  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGFEPSEGDRIVEIGAVELIGHMPTGRTYHQYINPQ-RTMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL DKP F  I  +F  F    +A+ + HNA FD+ F+NAEL  ++K  L  +R +D
Sbjct: 60  GDDFLADKPLFKDIADDFLTFIG--DAKLVIHNAAFDMKFLNAELGWLHKPALPMNRAVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IARRK P S   L++LC+R+GI  + R+ HGALLDS +L++VY++++ GG Q +F  
Sbjct: 118 TLMIARRKFPGSPASLDALCRRFGIDNAARTLHGALLDSEILAEVYLELI-GGRQPDFAL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                      +K         R  PL +R+T EE   H   +  +G +A+W R
Sbjct: 177 ---AQGSADSTQKNGAAWRAGPRPAPLASRLTAEETAAHTAFVNAMGDDAVWKR 227


>gi|315634676|ref|ZP_07889960.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|315476624|gb|EFU67372.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 253

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 94/249 (37%), Positives = 144/249 (57%), Gaps = 17/249 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           I+ N  R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ PN R   
Sbjct: 3   IQINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPN-RPVD 61

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA+K+HGITDE L DKP FS I +EF ++   + AE + HNA FDVGF++ E  ++N  
Sbjct: 62  PEAIKVHGITDEMLADKPDFSQIANEFIEYI--KGAELLIHNAPFDVGFMDYEFAKLNLP 119

Query: 117 PL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               D  ++ DTL++AR+ +P  +N+L++LC R GI  S R+ HGALLD+ +L+DVY+ M
Sbjct: 120 IKTNDICQVTDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLAM 179

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233
             G + +   F  NE    ++  +     ++           T+EEL  H + ++ + K 
Sbjct: 180 TGGQTSL---FDENESEIIQQVNEQQIQSAVAFSHNLRLLTPTEEELQAHLEYLKLINKK 236

Query: 234 ---NAIWDR 239
              N +W R
Sbjct: 237 SKDNCLWTR 245


>gi|254462819|ref|ZP_05076235.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206679408|gb|EDZ43895.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 224

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 91/228 (39%), Positives = 137/228 (60%), Gaps = 8/228 (3%)

Query: 13  DIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETTG D +  DRI+EIGAVEL++   T RT+  ++ P  R    +A ++HG+ D+FL+
Sbjct: 2   DTETTGFDPQQGDRIVEIGAVELINQMPTGRTYHQYINPE-RAMPDDAFQVHGLGDDFLR 60

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           DKP F  I  EF DF  +     + HNA FD+ F+NAEL  +N   L   + +DTL+IAR
Sbjct: 61  DKPVFKQIAQEFLDFVKDD--TMVIHNASFDMKFLNAELGWLNMKQLPMEQALDTLAIAR 118

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191
           ++ P S   L++LC+R+ I  S+R+ HGALLDS +L++VY++++ GG Q           
Sbjct: 119 KRFPGSPASLDALCRRFNIDNSNRTLHGALLDSEILAEVYLELL-GGRQPGLVLANTGGS 177

Query: 192 FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                ++T       KR  PL +RIT+EE   H   ++ LG++A+W +
Sbjct: 178 ASGGSEET---WRASKRPTPLPSRITEEEAKAHTAFVEKLGEDALWSK 222


>gi|134295347|ref|YP_001119082.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
 gi|134138504|gb|ABO54247.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 244

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 93/239 (38%), Positives = 134/239 (56%), Gaps = 13/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  DR+IEIG VELL+   T     +++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNPRSGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ +  +  DF   + AE I HNA FD+GF++AE  R+   P       +
Sbjct: 60  TTEFLSDKPKFAEVADQIRDFV--KGAELIIHNAPFDLGFLDAEFARLGLPPFIEHCDGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLAEAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
                +D            ISL   D P+    + +EL  H   +  L K+     +W 
Sbjct: 176 VIDMLDDAGADGGTANGQRISLASLDLPVVA-ASDDELAAHQAQLDELDKSVKGTCVWR 233


>gi|99082698|ref|YP_614852.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040]
 gi|99038978|gb|ABF65590.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040]
          Length = 243

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 99/245 (40%), Positives = 145/245 (59%), Gaps = 21/245 (8%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVELL++  T  TF V++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPQ-RSMPHEAFGVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             KDKP F+ +   F DF   ++++ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQPPAPGQVILKDKPLFAEVGQAFLDFV--RDSKMVIHNASFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +N   L   + IDTL++AR++ P S   L++LC+R+GI  S+R+ HGALLDS +L+DVY+
Sbjct: 118 MNLPQLPMDQAIDTLAMARKRFPGSPATLDALCRRFGIDNSNRTLHGALLDSEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++ GG Q +FG      +    +     N     R+ PL +R+T EE   HD+ +  LG
Sbjct: 178 ELI-GGRQPDFGLSA---QSSGGQNAVDTNWRPAPRETPLPSRLTAEEKAAHDEFVGKLG 233

Query: 233 KNAIW 237
           ++A+W
Sbjct: 234 EDALW 238


>gi|110677834|ref|YP_680841.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh
           114]
 gi|109453950|gb|ABG30155.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh
           114]
          Length = 228

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 145/234 (61%), Gaps = 8/234 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL+ +  T RT+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGRTYHQYINPE-RSMPEEAFQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ +   F DF    +A+ + HNA FD+ F+NAEL  IN   +   + ID
Sbjct: 60  GDDFLRDKPKFAEVGQAFLDFIG--DAKLVIHNAAFDIKFLNAELGWINLPKIPWEQAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IAR++ P S   L++LC+R+GI  + R+ HGALLDS +L++VY++++ GG Q +FG 
Sbjct: 118 TLDIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILAEVYLELI-GGRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
               +   K    T  + +   R  PL +RIT+EE   H   +  LG +A+W +
Sbjct: 177 S---NIPQKSAGDTSVDWTPRPRPTPLPSRITEEEAAAHADFVAKLGDDAVWLK 227


>gi|152995731|ref|YP_001340566.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1]
 gi|150836655|gb|ABR70631.1| DNA polymerase III, epsilon subunit [Marinomonas sp. MWYL1]
          Length = 237

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 10/238 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTG+D K   RIIEIG VE++    TNR F V++ P+ R+   EA ++HGI
Sbjct: 1   MRQVVLDTETTGIDPKQGHRIIEIGCVEMIGRKLTNRHFHVYINPD-REVEEEAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           ++EFL DKP F  I  EF+DF   + AE I HNA FD+GF++ E  RI   P   +   +
Sbjct: 60  SNEFLADKPRFHEIAQEFFDFI--KGAELIIHNAPFDIGFMDHEFARIGGYPKTAEVCGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L  AR+KHP  +N+L+ LC+RYGI  SHR  HGALLDS +L+DVY+ M  G + +  
Sbjct: 118 FDSLVYARKKHPGQKNNLDILCRRYGIDNSHRELHGALLDSEILADVYLLMTGGQTSLGL 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
              +  +   +   + +   S   R      R + EEL  H++ +  + K    ++W 
Sbjct: 178 ASSSESESKEEGGVEEIRRFS-ADRPALKVIRASSEELKLHEERLDLIDKKSGQSLWR 234


>gi|330503134|ref|YP_004380003.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
 gi|328917420|gb|AEB58251.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
          Length = 252

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 96/255 (37%), Positives = 141/255 (55%), Gaps = 13/255 (5%)

Query: 1   MIRKNKM-RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  +N + R +V D ETTG+      RIIEIG VELL    T R F V+L P+ R+    
Sbjct: 1   MTTENTVKRYVVLDTETTGMPVTDGHRIIEIGCVELLGRRLTGRHFHVYLNPD-REIDEG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115
           A+ +HGIT+E++ DKP F  +  EF++F   + A+ I HNA FDVGFIN E   + +   
Sbjct: 60  AIAVHGITNEYVADKPRFREVADEFYEFI--KGAQLIIHNAAFDVGFINNEFALLGQSER 117

Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D  D   ++DTL +AR +HP  RN L++LCKRYG+  S+R  HGALLDS +L+DVY+ M
Sbjct: 118 ADVSDYCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSNRELHGALLDSEILADVYLAM 177

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
             G + ++      +      ++ T        R +    R ++EEL  H   +  + K+
Sbjct: 178 TGGQTNLSLAGDGADGDGSGRQQATPIRRLDPSRARTRVIRASEEELAAHMARLAVIEKS 237

Query: 235 A----IWDRYISSNQ 245
           A    +W +   S +
Sbjct: 238 AGGPSLWAQLEKSPE 252


>gi|323495336|ref|ZP_08100414.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
 gi|323310407|gb|EGA63593.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
          Length = 245

 Score =  245 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 91/246 (36%), Positives = 144/246 (58%), Gaps = 19/246 (7%)

Query: 5   NKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           N+ R +V D ETTG++ +        RIIEIGAVE+++   T R F V++ P+ R+  P+
Sbjct: 8   NQHRIVVLDTETTGMNREGGPHYQDHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPD 66

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---K 115
           A+++HGITDEFL DKP +  + +EF +F   + AE +AHNA FDVGF++ E   ++    
Sbjct: 67  AVEVHGITDEFLVDKPDYRDVHAEFLEFI--KGAELVAHNAPFDVGFMDHEFGMLDPSIG 124

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M 
Sbjct: 125 KTVDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMT 184

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK-- 233
            G + + F    + +   +  K+         R      R T +EL+ H   +  + K  
Sbjct: 185 GGQTSLQFNAGNSSEDGGEAIKRVASG-----RKSLKVLRATADELEAHQSRLDIVEKSG 239

Query: 234 NAIWDR 239
           + +W +
Sbjct: 240 SCLWRQ 245


>gi|310817168|ref|YP_003965132.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare
           Y25]
 gi|308755903|gb|ADO43832.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare
           Y25]
          Length = 224

 Score =  245 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 94/227 (41%), Positives = 139/227 (61%), Gaps = 6/227 (2%)

Query: 13  DIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETTG + +  DRI+EIG VELL++  T RT+  ++ P  R    +A K+HG++ EFL 
Sbjct: 2   DTETTGFEPETGDRIVEIGCVELLNHLPTGRTYHQYINPQ-RDMPEDAFKVHGLSAEFLS 60

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           DKP F+ +  +F DF    +A  + HNA FDV F+NAEL  + K  + P+R +DTL IAR
Sbjct: 61  DKPLFAQVAQDFLDFIG--DANLVIHNAAFDVKFLNAELGWVKKPLIAPARAVDTLLIAR 118

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191
           R+ P ++N L++LC+R+GI  S R+ HGALLDS +L++VY++++ GG Q +FG       
Sbjct: 119 RRFPGAQNSLDALCRRFGIDNSKRTLHGALLDSEILAEVYLELI-GGRQPDFGLSAAAST 177

Query: 192 FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
              +   T        R  PL TR+T++E   H   ++ LG  A W+
Sbjct: 178 P-AQGNVTRSAWRPQPRPNPLPTRLTEDEAKAHAAFVEKLGPEAAWN 223


>gi|238026771|ref|YP_002911002.1| DNA polymerase III subunit epsilon [Burkholderia glumae BGR1]
 gi|237875965|gb|ACR28298.1| DNA polymerase III, epsilon subunit [Burkholderia glumae BGR1]
          Length = 240

 Score =  245 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 94/240 (39%), Positives = 135/240 (56%), Gaps = 13/240 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VE+L+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRIIEIGCVEMLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ I     DF   +  E I HNA FD+GFI+AEL+R+   PL    + +
Sbjct: 60  TTEFLSDKPKFAEIAQALCDFV--RGGELIIHNAPFDIGFIDAELERLGMPPLLEHCNGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A+   P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                 D   +  +     +S    D P     +++EL  H   +  L K+     +W +
Sbjct: 176 VIDMLGDTGDRGGETGGSRVSFASLDLP-VIAASEQELAAHQAQLDDLDKSVKGACVWRQ 234


>gi|259417863|ref|ZP_05741782.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
 gi|259346769|gb|EEW58583.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
          Length = 243

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 98/246 (39%), Positives = 143/246 (58%), Gaps = 21/246 (8%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVELL++  T  TF V++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPE-RSMPHEAFGVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             KDKP F+ +   F DF   ++++ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQPAAPGQVTLKDKPLFAEVGQAFLDFV--RDSKMVIHNASFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +N   L   + IDTL++AR++ P S   L++LC+R+ I  S+R+ HGALLDS +L+DVY+
Sbjct: 118 MNLRQLPMEQAIDTLAMARKRFPGSPATLDALCRRFSIDNSNRTLHGALLDSEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++ GG Q +FG  T   +    +     N     R  PL +R+T EE   H++ +  LG
Sbjct: 178 ELI-GGRQPDFGLST---QSGSGQNAADTNWRPSPRATPLPSRLTSEEKTAHEEFVAKLG 233

Query: 233 KNAIWD 238
             A+W+
Sbjct: 234 AEALWN 239


>gi|255264769|ref|ZP_05344111.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62]
 gi|255107104|gb|EET49778.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62]
          Length = 231

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 143/234 (61%), Gaps = 6/234 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  + DRI+EIGAVELL++  T RT+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFEPNEGDRIVEIGAVELLNHVPTGRTYHQYINPK-RSMPKEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F+ I   F DF      + I HNA FD+ F+NAEL  +N+  L   + +D
Sbjct: 60  GDDFLRDKPFFADIAQAFVDFVGTD--KMIIHNAAFDMKFLNAELGWVNRPLLPMDQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IARR+ P S   L++LC+R+GI  S R+ HGALLDS +L++VY++++ GG Q +FG 
Sbjct: 118 TLAIARRRFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLELI-GGRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            T      K    T  N     R  PL + +++EE   H   +  LG + +W +
Sbjct: 177 NTAPKEEKKFVTSTTDN-RPKSRSTPLVSLLSEEEATAHSAFVDKLGDDVLWKK 229


>gi|262170796|ref|ZP_06038474.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
 gi|261891872|gb|EEY37858.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
          Length = 247

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 93/243 (38%), Positives = 140/243 (57%), Gaps = 17/243 (6%)

Query: 7   MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R+   EA+
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAI 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DP 117
           ++HGITDEFL+DKP +  +  EF DF   ++AE +AHNA FDVGF++ E  ++       
Sbjct: 69  EVHGITDEFLRDKPEYKDVHDEFLDFI--KDAELVAHNAPFDVGFMDYEFAKLGGSVVKT 126

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G
Sbjct: 127 TDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235
            + + F   T   +   E+       S  +R        + +EL  H   +  + K+   
Sbjct: 187 QTSLQFSAAT---QNSGEQGAESLKRSRSERKALKVLHASADELQAHQDRLDLVAKSGTC 243

Query: 236 IWD 238
           +W 
Sbjct: 244 LWR 246


>gi|206559631|ref|YP_002230392.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia J2315]
 gi|198035669|emb|CAR51556.1| DNA polymerase III, epsilon chain [Burkholderia cenocepacia J2315]
          Length = 244

 Score =  244 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 92/240 (38%), Positives = 135/240 (56%), Gaps = 13/240 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ +  +  DF   ++AE I HNA FD+GF++AE  R+   P       +
Sbjct: 60  TTEFLSDKPKFAEVAHQILDFV--KDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                +D            +SL   D P+    + +EL  H   +  L K+     +W +
Sbjct: 176 VIDMLDDASADGGAANGKRVSLAALDLPVVV-ASDDELAAHQAQLDELDKSVKGTCVWRQ 234


>gi|258621021|ref|ZP_05716055.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573]
 gi|262166312|ref|ZP_06034049.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
 gi|258586409|gb|EEW11124.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573]
 gi|262026028|gb|EEY44696.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
          Length = 247

 Score =  244 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 93/243 (38%), Positives = 137/243 (56%), Gaps = 17/243 (6%)

Query: 7   MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R+   EA+
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAI 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DP 117
           ++HGITDEFL+DKP +  +  EF DF   + AE +AHNA FDVGF++ E  ++       
Sbjct: 69  EVHGITDEFLRDKPEYKDVHDEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGSVVKT 126

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G
Sbjct: 127 TDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235
            + + F   T        E       S  +R        + +EL  H   +  + K+   
Sbjct: 187 QTSLQFSAATQNSGELGAESLKR---SRSERKALKVLHASADELQAHQDRLDLVAKSGTC 243

Query: 236 IWD 238
           +W 
Sbjct: 244 LWR 246


>gi|262404569|ref|ZP_06081124.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
 gi|262349601|gb|EEY98739.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
          Length = 247

 Score =  244 bits (623), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 92/243 (37%), Positives = 138/243 (56%), Gaps = 17/243 (6%)

Query: 7   MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R+   EA+
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAI 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DP 117
           ++HGITDEFL+DKP +  +  EF DF   + AE +AHNA FDVGF++ E  ++       
Sbjct: 69  EVHGITDEFLRDKPEYKQVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGSVIKT 126

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G
Sbjct: 127 TDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235
            + + F   T        E       +  +R        + +EL  H + +  + K+   
Sbjct: 187 QTSLQFSASTQNSGELNAESLKR---ARSERKALKVLHASADELQAHQERLDLVAKSGTC 243

Query: 236 IWD 238
           +W 
Sbjct: 244 LWR 246


>gi|304392717|ref|ZP_07374657.1| DNA polymerase III, epsilon subunit [Ahrensia sp. R2A130]
 gi|303295347|gb|EFL89707.1| DNA polymerase III, epsilon subunit [Ahrensia sp. R2A130]
          Length = 249

 Score =  244 bits (623), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 99/240 (41%), Positives = 150/240 (62%), Gaps = 8/240 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M  I+FD ETTGL +K  DR+IEIGAVE+ D   T RTF  ++ P  R+  P+AL++HGI
Sbjct: 1   MHAIIFDTETTGLSAKDGDRVIEIGAVEMKDLIPTGRTFHQYIHPGDREIHPDALRVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E L D+P F ++   F DF    +A  +AHNA FD+GF+NAE  R+N  P DP  ++D
Sbjct: 61  TMERLADEPRFEAVGQSFIDFCG--DAMLVAHNAPFDIGFLNAEYARMNLPPCDPELVLD 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+  AR+K P +R  L+ LC R+ I+ ++R  HGALLD+ LL++V+I++M GG+Q+  GF
Sbjct: 119 TVQAARKKFPGARVSLDMLCDRFNISRANRVLHGALLDARLLAEVFIELM-GGAQVKMGF 177

Query: 186 ----KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
               +T+  R     ++   +    +R   +   +T EE + H+     +GK A+W++Y+
Sbjct: 178 DDEAETDAQRADPRNRRQTQHPPQPQRPSAMVYELTPEERERHNAMRAKIGKGALWNQYL 237


>gi|330445182|ref|ZP_08308834.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489373|dbj|GAA03331.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 241

 Score =  244 bits (623), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 97/247 (39%), Positives = 141/247 (57%), Gaps = 17/247 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R IVFD ETTG++      +  RIIEIGAVE+++   T  TF V++ P+ R   
Sbjct: 1   MKATNQRIIVFDTETTGMNMSGPHYEGHRIIEIGAVEIINRKLTGNTFHVYIKPD-RPID 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114
           PEA+ +HGITDEFL  KPS++ I  EF DF +   AE +AHNA FD+GF++ E Q +   
Sbjct: 60  PEAIDVHGITDEFLVGKPSYAEIHQEFIDFID--GAELVAHNASFDIGFMDYEFQLMGSD 117

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            K   D  ++ DTL +A+R  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 118 LKKTEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLM 177

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           M  G + +     +  D   +   K +      +R          +EL  H++ +  +GK
Sbjct: 178 MTGGQTSLKLSSDSEGDSDTEFAIKRLTG----ERKGLKVILAAADELTAHEERLDLIGK 233

Query: 234 NA--IWD 238
            A  +W 
Sbjct: 234 KADVLWR 240


>gi|237807686|ref|YP_002892126.1| DNA polymerase III, epsilon subunit [Tolumonas auensis DSM 9187]
 gi|237499947|gb|ACQ92540.1| DNA polymerase III, epsilon subunit [Tolumonas auensis DSM 9187]
          Length = 249

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/250 (35%), Positives = 139/250 (55%), Gaps = 17/250 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M      R ++ D ETTG++          RIIEIG VE+++   T   + V++ P+ R 
Sbjct: 1   MNPMQTNRYVILDTETTGMNQSGGPVYIGHRIIEIGCVEVINRRLTGNHYHVYIKPD-RL 59

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              EA+++HGITD FL DKP F++I  EF DF   + AE + HNA FDVGFI+ E  ++ 
Sbjct: 60  VDEEAIRVHGITDAFLADKPPFAAIAQEFRDFI--RGAELVIHNASFDVGFIDHEFNKLG 117

Query: 115 KDP--LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 D  R+ D+L++AR + P  RN L++LC R+GI  SHR+ HGALLD+ +L+DVY+
Sbjct: 118 WTERVKDICRVTDSLALARGQFPGKRNSLDALCTRFGIDNSHRTLHGALLDAEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTL 231
            M  G +++      N++        +   + +++R+  L     + +EL  H+K +  +
Sbjct: 178 LMTGGQTRLELHNTVNDNNSASSA--SAQQLKMIQRNGSLKVLSASADELAAHEKRLDLV 235

Query: 232 GKN---AIWD 238
            K     +W 
Sbjct: 236 AKKGGCCLWR 245


>gi|153825368|ref|ZP_01978035.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2]
 gi|183179467|ref|ZP_02957678.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3]
 gi|229524236|ref|ZP_04413641.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|229528763|ref|ZP_04418153.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|254225776|ref|ZP_04919381.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51]
 gi|254286458|ref|ZP_04961415.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226]
 gi|262192140|ref|ZP_06050301.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|297580875|ref|ZP_06942800.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|125621682|gb|EAZ50011.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51]
 gi|149741052|gb|EDM55121.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2]
 gi|150423407|gb|EDN15351.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226]
 gi|183012878|gb|EDT88178.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3]
 gi|229332537|gb|EEN98023.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229337817|gb|EEO02834.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|262031989|gb|EEY50566.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|297534701|gb|EFH73537.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|327484751|gb|AEA79158.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4]
          Length = 247

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 93/243 (38%), Positives = 136/243 (55%), Gaps = 17/243 (6%)

Query: 7   MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R    EA+
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAI 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DP 117
           ++HGITDEFLKDKP +  +  EF DF   + AE +AHNA FDVGF++ E  ++       
Sbjct: 69  EVHGITDEFLKDKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKT 126

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G
Sbjct: 127 SDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235
            + + F   T        E       +  +R        + +EL  H   +  + K+   
Sbjct: 187 QTSLQFSSATQNSGELSAESLKR---ARSERKALKVLAASADELQAHQDRLDIVAKSGTC 243

Query: 236 IWD 238
           +W 
Sbjct: 244 LWR 246


>gi|229513876|ref|ZP_04403338.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|229349057|gb|EEO14014.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
          Length = 247

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 93/243 (38%), Positives = 136/243 (55%), Gaps = 17/243 (6%)

Query: 7   MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R    EA+
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAI 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DP 117
           ++HGITDEFLKDKP +  +  EF DF   + AE +AHNA FDVGF++ E  ++       
Sbjct: 69  EVHGITDEFLKDKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKT 126

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G
Sbjct: 127 SDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235
            + + F   T        E       +  +R        + +EL  H   +  + K+   
Sbjct: 187 QTSLQFSSVTQNSGELSAESLKR---ARSERKALKVLAASADELQAHQDRLDIVAKSGTC 243

Query: 236 IWD 238
           +W 
Sbjct: 244 LWR 246


>gi|258627375|ref|ZP_05722159.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603]
 gi|258580413|gb|EEW05378.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603]
          Length = 247

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 93/243 (38%), Positives = 138/243 (56%), Gaps = 17/243 (6%)

Query: 7   MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R+   EA+
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAI 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DP 117
           ++HGITDEFL+DKP +  +  EF DF   ++AE +AHNA FDVGF++ E  ++       
Sbjct: 69  EVHGITDEFLRDKPEYKDVHDEFLDFI--KDAELVAHNAPFDVGFMDYEFAKLGGSVVKT 126

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G
Sbjct: 127 TDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235
            + + F   T        E       S  +R        + +EL  H   +  + K+   
Sbjct: 187 QTSLQFSAATQNSGELGAESLKR---SRSERKALKVLHASADELQAHQDRLDLVAKSGTC 243

Query: 236 IWD 238
           +W 
Sbjct: 244 LWR 246


>gi|323498002|ref|ZP_08103011.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
 gi|323317047|gb|EGA70049.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
          Length = 247

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 94/244 (38%), Positives = 142/244 (58%), Gaps = 19/244 (7%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IV D ETTG++ +        RIIEIGAVE+++   T R F V++ P+ R+  PEA+ 
Sbjct: 11  RIIVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RQIQPEAVL 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118
           +HGITDEFL DKP +  +  EF +F   + AE +AHNA FD GF++ E + +N       
Sbjct: 70  VHGITDEFLVDKPEYQDVHQEFLEFI--KGAELVAHNAPFDTGFMDYEFEMLNAQIGKTE 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFG-FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NA 235
           + + F    ++ D    E  K V +     R      R + +EL+ H   +  + K  + 
Sbjct: 188 TSLQFNPGASDSDAVGGESIKRVAS----GRKALKVIRASADELEAHQSRLDIVEKSGSC 243

Query: 236 IWDR 239
           +W +
Sbjct: 244 LWRQ 247


>gi|254508645|ref|ZP_05120760.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16]
 gi|219548402|gb|EED25412.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16]
          Length = 247

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 91/248 (36%), Positives = 141/248 (56%), Gaps = 21/248 (8%)

Query: 5   NKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           N+ R +V D ETTG++ +        RIIEIGAVE+++   T R F V++ P+ R    E
Sbjct: 8   NQHRIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RDIQAE 66

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---K 115
           A+++HGITDEFL DKP +  + +EF +F   + AE +AHNA FD GF++ E + ++    
Sbjct: 67  AVQVHGITDEFLVDKPEYQDVHAEFLEFI--KGAELVAHNAPFDTGFMDYEFEMLDPSIG 124

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M 
Sbjct: 125 KTDDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMT 184

Query: 176 VGGSQINF--GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
            G + + F  G     D   +  K+         R      R + +EL+ H   +  + K
Sbjct: 185 GGQTSLQFNAGNSDGSDVGGESIKRVASG-----RKALKVIRASADELEAHQNRLDIVEK 239

Query: 234 --NAIWDR 239
             + +W +
Sbjct: 240 SGSCLWRQ 247


>gi|239993463|ref|ZP_04713987.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC
           27126]
          Length = 239

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 91/240 (37%), Positives = 139/240 (57%), Gaps = 16/240 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D K   RIIEIG VE+++   T   F V++ P GR    EA+++HGI
Sbjct: 1   MRQIVLDTETTGIDPKEGHRIIEIGCVEVVNRRLTGNHFHVYINP-GRHIEQEAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPS 121
           T+EFL DKP+FS +  EF  F   + A+ + HNA FDVGF++ E                
Sbjct: 60  TNEFLADKPTFSQVAQEFVSFI--KGAQLVIHNAPFDVGFMDHEFGMEASTKGVITNQIC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL++AR+ HP  +N+L++LCKRYGI  SHR+ HGALLD+ +L+DVY+ M  G +++
Sbjct: 118 DVLDTLTLARQMHPGQKNNLDALCKRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTKL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238
                +  D      ++   + + LK       + T +E+ +H+  +  +   G   +W 
Sbjct: 178 KLASSSGSDADSTAIRRVKRSANKLK-----VIKATADEITQHEARLDIVEKAGGKCLWR 232


>gi|325527245|gb|EGD04625.1| DNA polymerase III subunit epsilon [Burkholderia sp. TJI49]
          Length = 243

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 92/240 (38%), Positives = 134/240 (55%), Gaps = 13/240 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  DR+IEIG VELL+   T     +++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ +  +  DF   + AE I HNA FD+GF++AE  R+   P       +
Sbjct: 60  TTEFLSDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                +D            +SL   D P+    + +EL  H   +  L K+     +W +
Sbjct: 176 VIDMLDDEAADGGAGGGQRVSLASLDLPVLA-ASDDELAAHQTQLDELDKSVKGTCVWRQ 234


>gi|304311305|ref|YP_003810903.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1]
 gi|301797038|emb|CBL45251.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1]
          Length = 246

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 95/246 (38%), Positives = 144/246 (58%), Gaps = 12/246 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+IV D ETTGL+  +  RIIEIG VEL+D   T R +  ++ P  R     A+ +HGI
Sbjct: 4   LRQIVLDTETTGLEPAEGHRIIEIGCVELVDRRHTGRHYHQYINPE-RLVDAGAMAVHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T+EFL DKP F+ I   F++F N   AE + HNA FDVGFIN E   + +     +   +
Sbjct: 63  TNEFLADKPKFAEIADAFFEFIN--GAELVIHNAAFDVGFINHEFNLLKRFGTVGEHCSV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR+KHP  +N+L++LC+RY I  S R  HGALLD+ +L+DVY+ M  G + ++F
Sbjct: 121 LDTLLMARKKHPGQKNNLDALCRRYEIDNSQRELHGALLDAQILADVYLAMTGGQTALSF 180

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239
               +E +       TV   S  +       R ++ E++ H++ +Q L K    N ++ +
Sbjct: 181 S-SGDEGQSGAASVATVQRFSDNRAP-LKVIRASQAEIEAHEQYVQLLDKRSSGNTVYRK 238

Query: 240 YISSNQ 245
           Y  S++
Sbjct: 239 YSPSSE 244


>gi|229522180|ref|ZP_04411597.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229341105|gb|EEO06110.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
          Length = 247

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/243 (38%), Positives = 137/243 (56%), Gaps = 17/243 (6%)

Query: 7   MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R    EA+
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAI 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DP 117
           ++HGITDEFLKDKP +  +  EF DF   + AE +AHNA FDVGF++ E  ++       
Sbjct: 69  EVHGITDEFLKDKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKT 126

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G
Sbjct: 127 SDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235
            + + F   T        E       +  +R        + +EL  H   ++ + K+   
Sbjct: 187 QTSLQFSSVTQNSGELSAESLKR---ARSERKALKVLAASADELQAHQDRLEIVAKSGTC 243

Query: 236 IWD 238
           +W 
Sbjct: 244 LWR 246


>gi|269140166|ref|YP_003296867.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202]
 gi|267985827|gb|ACY85656.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202]
 gi|304559999|gb|ADM42663.1| DNA polymerase III epsilon subunit [Edwardsiella tarda FL6-60]
          Length = 243

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/242 (37%), Positives = 136/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPD-RLVDPEAFTV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+D+FL DKPSF+ +  EF  F   + AE + HNA FD+GF++ E  ++ +D      
Sbjct: 66  HGISDDFLLDKPSFAEVADEFLAFI--RGAELVIHNAPFDIGFMDYEFAKLGRDLPKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G  
Sbjct: 124 FCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMTGG-- 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
           Q +  F ++ D   + +   +  + +           ++ EL  H++ +   Q  G + +
Sbjct: 182 QTSLAFSSDGDGTSQSQASEIRRV-VRGAKGLRVVYASEAELAAHEQRLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|32035046|ref|ZP_00135112.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126208748|ref|YP_001053973.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           L20]
 gi|126097540|gb|ABN74368.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 257

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/251 (35%), Positives = 140/251 (55%), Gaps = 16/251 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKP F+ +  EF +F   + AE I HNA FDV F++ E   +  
Sbjct: 60  DEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLGN 117

Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P    +   + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            MM GG     G +             +  I+  +    +   +++EE   H++ ++ + 
Sbjct: 178 -MMTGGQLALLGEEDATATHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236

Query: 233 K----NAIWDR 239
           K    N IW R
Sbjct: 237 KKSKGNCIWMR 247


>gi|86146863|ref|ZP_01065182.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
 gi|85835315|gb|EAQ53454.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
          Length = 255

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/243 (37%), Positives = 139/243 (57%), Gaps = 20/243 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++++        RI+EIGAVE+++   T R F V++ P+ R    EA+ 
Sbjct: 22  RIVVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRRLTGRHFHVYIKPD-RAIQEEAIG 80

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118
           +HGITDEFL DKP +  I  EF DF   + AE +AHNA FD GF++ E +++N       
Sbjct: 81  VHGITDEFLIDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLNPAIGKTD 138

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 139 DYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 198

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAI 236
           + + F      +   +E +      +   R      R T +E++ H   +  + K  + +
Sbjct: 199 TSLQF------NAGQQEGEGESIRRAESGRKSLKVLRATADEVEAHQSRLDLVEKSGSCL 252

Query: 237 WDR 239
           W +
Sbjct: 253 WRQ 255


>gi|261211353|ref|ZP_05925641.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
 gi|260839308|gb|EEX65934.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
          Length = 247

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 91/243 (37%), Positives = 138/243 (56%), Gaps = 17/243 (6%)

Query: 7   MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R+   EA+
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAI 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDP 117
           ++HGITDEFL+DKP +  + +EF DF   + AE +AHNA FDVGF++ E  ++       
Sbjct: 69  EVHGITDEFLRDKPEYKEVHAEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGSSIGKT 126

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G
Sbjct: 127 TDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235
            + + F   +   +   E        +   R          +EL  H + +  + K+   
Sbjct: 187 QTSLQF---SASSQNSGELGAESLKRARSGRKALKVLHANADELQAHQERLDLVAKSGTC 243

Query: 236 IWD 238
           +W 
Sbjct: 244 LWR 246


>gi|15642231|ref|NP_231864.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586228|ref|ZP_01676018.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80]
 gi|121726541|ref|ZP_01679790.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52]
 gi|147674786|ref|YP_001217749.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395]
 gi|153213799|ref|ZP_01949007.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587]
 gi|153817083|ref|ZP_01969750.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457]
 gi|153820811|ref|ZP_01973478.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33]
 gi|227082357|ref|YP_002810908.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2]
 gi|229507692|ref|ZP_04397197.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229512113|ref|ZP_04401592.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229519248|ref|ZP_04408691.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229607196|ref|YP_002877844.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236]
 gi|254849364|ref|ZP_05238714.1| DNA polymerase III [Vibrio cholerae MO10]
 gi|255747069|ref|ZP_05421014.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262161386|ref|ZP_06030496.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262167744|ref|ZP_06035446.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|298500392|ref|ZP_07010197.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757]
 gi|9656792|gb|AAF95377.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121549494|gb|EAX59520.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80]
 gi|121630994|gb|EAX63373.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52]
 gi|124115723|gb|EAY34543.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587]
 gi|126512351|gb|EAZ74945.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457]
 gi|126521603|gb|EAZ78826.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33]
 gi|146316669|gb|ABQ21208.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|227010245|gb|ACP06457.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2]
 gi|227014129|gb|ACP10339.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229343937|gb|EEO08912.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229352078|gb|EEO17019.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229355197|gb|EEO20118.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229369851|gb|ACQ60274.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236]
 gi|254845069|gb|EET23483.1| DNA polymerase III [Vibrio cholerae MO10]
 gi|255735471|gb|EET90871.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262023809|gb|EEY42508.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262028697|gb|EEY47351.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|297541085|gb|EFH77139.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757]
          Length = 247

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/243 (38%), Positives = 136/243 (55%), Gaps = 17/243 (6%)

Query: 7   MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R    EA+
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAI 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DP 117
           ++HGITDEFLKDKP +  +  EF DF   + AE +AHNA FDVGF++ E  ++       
Sbjct: 69  EVHGITDEFLKDKPEYKDVHEEFVDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKT 126

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G
Sbjct: 127 SDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235
            + + F   T        E       +  +R        + +EL  H   +  + K+   
Sbjct: 187 QTSLQFSSVTQNSGELSAESLKR---ARSERKALKVLAASADELQAHQDRLDIVAKSGTC 243

Query: 236 IWD 238
           +W 
Sbjct: 244 LWR 246


>gi|209695823|ref|YP_002263753.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238]
 gi|208009776|emb|CAQ80082.1| DNA polymerase III, epsilon chain [Aliivibrio salmonicida LFI1238]
          Length = 243

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 96/240 (40%), Positives = 137/240 (57%), Gaps = 16/240 (6%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IV D ETTG++       +  RIIEIGAVE+++   T   F V++ P+ R    EA+ 
Sbjct: 10  RIIVLDTETTGMNLSGGPIYEGHRIIEIGAVEIINRKLTGNHFHVYIKPD-RLIDLEAID 68

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118
           +HGITDEFL  KP +  I  EF  F   + AE +AHNA FDVGF++ E  ++NK      
Sbjct: 69  VHGITDEFLYGKPEYKDIHDEFLAFI--KGAELVAHNAPFDVGFMDYEFSKLNKLIGTTD 126

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              +I DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 127 QYCKITDTLAMAKKISPGKRNNLDVLCGRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 186

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           + ++F    NE    +E    +     L R      R T +EL+ H+K +  +G   +W 
Sbjct: 187 TSLSFSAGGNESDSSEESINRL----NLGRKGLKVLRATADELEAHEKRLDIVGDACLWR 242


>gi|167587486|ref|ZP_02379874.1| DNA polymerase III subunit epsilon [Burkholderia ubonensis Bu]
          Length = 242

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/246 (37%), Positives = 138/246 (56%), Gaps = 13/246 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ +  +  DF   + AE I HNA FD+GF++AE  R++  P     + +
Sbjct: 60  TTEFLSDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                +D            +SL   D P+    + +EL  H   +  L K+     +W R
Sbjct: 176 VIDMLDDDAADGGAANGQRVSLASLDLPVLA-ASDDELAAHQAQLDGLDKSVKGTCVWRR 234

Query: 240 YISSNQ 245
             ++  
Sbjct: 235 TPAAGD 240


>gi|89075025|ref|ZP_01161470.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
 gi|89049264|gb|EAR54828.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
          Length = 241

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 98/247 (39%), Positives = 145/247 (58%), Gaps = 17/247 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R IVFD ETTG++      +  RI+EIGAVE+++   T +TF V++ P+ R   
Sbjct: 1   MKATNQRIIVFDTETTGMNMTGPHYEGHRIVEIGAVEIINRKLTGKTFHVYIKPD-RPID 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114
           PEA+ +HGITDEFL  KPS++ I  EF DF +   AE +AHNA FD+GF++ E Q +   
Sbjct: 60  PEAIDVHGITDEFLIGKPSYADIHQEFIDFID--GAELVAHNASFDIGFMDYEFQLMGSD 117

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            K   D  ++ DTL +A+R  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 118 LKKTEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLM 177

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           M  G + +    K + D     EK+      + +R        + +EL  H++ +  +GK
Sbjct: 178 MTGGQTSL----KLSGDNEGDSEKEFAIKRLVGERKGLKVICASADELVSHEERLDLIGK 233

Query: 234 NA--IWD 238
            A  +W 
Sbjct: 234 KADVLWR 240


>gi|89052685|ref|YP_508136.1| DNA polymerase III, epsilon subunit [Jannaschia sp. CCS1]
 gi|88862234|gb|ABD53111.1| DNA polymerase III epsilon subunit [Jannaschia sp. CCS1]
          Length = 231

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/237 (38%), Positives = 137/237 (57%), Gaps = 10/237 (4%)

Query: 7   MRKIVFDIETTGLDSK---NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           MR+IV D ETTGL+       RI+EIGAVE+ +   T +T+  ++ P  R    EA  +H
Sbjct: 1   MREIVLDTETTGLNPYDMPRHRIVEIGAVEIFNQVPTGKTYHQYIQPE-RDMPKEAFDVH 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI ++FL DKP F+ I  +F DF        + HNA+FD+ F+NAEL+   K  L   + 
Sbjct: 60  GIGEDFLADKPIFADIAQDFLDFVGGDQ--MVIHNAEFDMRFLNAELEWAGKHALPNDQA 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL IAR+K P S   L++LC+R+GI  S R KHGALLDS +L++VY+++  GG Q +F
Sbjct: 118 LDTLKIARQKFPGSPASLDALCRRFGIDNSAREKHGALLDSEILAEVYLELT-GGKQPDF 176

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
           G   ++    +++ +   N     R   L TR++  E   H   +  LG   +W ++
Sbjct: 177 GLSQSKSTPTQQQDE---NWRPRPRPSALPTRLSDVEKAAHAAFVDALGDQTVWSKF 230


>gi|90021666|ref|YP_527493.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40]
 gi|89951266|gb|ABD81281.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40]
          Length = 238

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 94/241 (39%), Positives = 138/241 (57%), Gaps = 13/241 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+  +  RIIEIG VEL++   T R +  ++ P  R+    A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPSQGHRIIEIGCVELINRKLTGRHYHQYIKPE-REIDEGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122
           T+EFL DKP F  I  EF  F +   AE + HNA FDVGF+N E   + +      D   
Sbjct: 60  TNEFLADKPVFKDIADEFMAFVD--GAELVIHNAPFDVGFLNHEFNLLGRGSTVINDRCS 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL++AR KHP  +N+L++LCKRYG   S R  HGALLD+ +L+DVY+ M  G + + 
Sbjct: 118 ILDTLALARNKHPGQKNNLDALCKRYGADNSARDLHGALLDAEILADVYLLMTGGQTNLA 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
            G          +  + +  +S  ++  P+  R + EEL  H+K +  +    G   +W 
Sbjct: 178 LG-GAGSSSGMDDGGEELVRVSADRKPLPII-RASAEELALHEKKLAEIDKASGGECLWL 235

Query: 239 R 239
           +
Sbjct: 236 K 236


>gi|260767799|ref|ZP_05876734.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260617308|gb|EEX42492.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
          Length = 246

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/243 (37%), Positives = 137/243 (56%), Gaps = 18/243 (7%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R    EA++
Sbjct: 11  RIVVLDTETTGMNLEGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RAIQDEAIE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP- 120
           +HGITDEFL DKP +  +  EF DF   + AE +AHNA FDVGF++ E  +++       
Sbjct: 70  VHGITDEFLVDKPEYKDVHEEFLDFI--RGAELVAHNAPFDVGFMDYEFSKLSIPTAKTD 127

Query: 121 --SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 ELCKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
           + + F   + E+       K V       R      R T +E+  H   +  + K+   +
Sbjct: 188 TSLQFSGSSQENGMGAGAIKRVAE----GRKALKVLRATADEIQAHQDRLDIVEKSGTCL 243

Query: 237 WDR 239
           W +
Sbjct: 244 WRQ 246


>gi|330816255|ref|YP_004359960.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
 gi|327368648|gb|AEA60004.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
          Length = 240

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 93/240 (38%), Positives = 135/240 (56%), Gaps = 13/240 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VE+L+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRIIEIGCVEMLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123
           T EFL DKP F+ +     DF   + AE I HNA FD+GFI+AE +R+   PL+      
Sbjct: 60  TTEFLSDKPKFAEVAHAICDFV--RGAELIIHNAPFDIGFIDAEFERVGLPPLNQHCDGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                 D   +        +SL     P+    +++EL  H   +  L K+     +W +
Sbjct: 176 VIDMLGDGDDEGGASGAARVSLATLALPVLA-ASEDELAAHLAQLDDLDKSVKGACVWRK 234


>gi|148251776|ref|YP_001236361.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. BTAi1]
 gi|146403949|gb|ABQ32455.1| DNA polymerase III, epsilon subunit [Bradyrhizobium sp. BTAi1]
          Length = 232

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 99/239 (41%), Positives = 140/239 (58%), Gaps = 10/239 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD+ + DR++EIG VE+++   T + F  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHRYINPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F  I  EF +F    +A  + HNA FD+GFINAEL R+ +  +   R++D
Sbjct: 60  SSEFLADKPLFHEIVEEFLEFIG--DAPLVIHNASFDIGFINAELDRVKRAAIPRERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFG 184
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VY+ ++    SQ+   
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQSQLILT 177

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
             T E R          +    +R+ PL  R+T  E + H   I TLG   IW  +++ 
Sbjct: 178 QDTQEIRVGAAG-----DTPRRQRETPLAARVTDAEREAHRAFIATLGDKPIWMEFLAG 231


>gi|268592015|ref|ZP_06126236.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131]
 gi|291312407|gb|EFE52860.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131]
          Length = 247

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 91/246 (36%), Positives = 140/246 (56%), Gaps = 22/246 (8%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P+ R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL+DKP F+ I  EF +F   + AE + HNA FD+GF++ E +++NK       
Sbjct: 66  HGISDEFLQDKPVFAEIADEFLEFI--RGAELVIHNAPFDIGFMDYEFRKLNKGIPPTQD 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +AR+  P  RN+L++LC RY I  S R+ HGALLD+ +LSDVY+ M  G +
Sbjct: 124 FCTITDSLVLARKLFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKN--- 234
            ++F   +      +E +     I  ++R +        + EEL  H+  +  + K    
Sbjct: 184 SLSFSMDSESANNEQEYE-----IQRIERPQTGLRVIFASDEELIAHEARLDIVDKKGGK 238

Query: 235 -AIWDR 239
             +W +
Sbjct: 239 PCLWRQ 244


>gi|192359256|ref|YP_001982513.1| DNA polymerase III subunit epsilon [Cellvibrio japonicus Ueda107]
 gi|190685421|gb|ACE83099.1| DNA polymerase III, epsilon subunit [Cellvibrio japonicus Ueda107]
          Length = 237

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 92/243 (37%), Positives = 135/243 (55%), Gaps = 17/243 (6%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S+  RIIEIG VEL++   T R +  ++ P  R+    A  +HGI
Sbjct: 1   MRQIVLDTETTGLEYSQGHRIIEIGCVELMNRRLTGRHYHQYINPE-REVDAGAFAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPLDPSR 122
           ++  L DKP F+ I  +F +F    +AE I HNA FD+GFI+ EL  +            
Sbjct: 60  SNAMLNDKPVFARIVDDFLNFVG--DAELIIHNAAFDIGFIDHELNMLRPGFGSIKGRCG 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDTL +AR KHP  +N+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M  G + ++
Sbjct: 118 VIDTLLLARNKHPGQKNNLDALCKRYGVDNSQRDLHGALLDAEILADVYLAMTGGQTSLS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLL--KRDKPLFTRITKEELDEHDKTIQTL----GKNAI 236
            G     ++   E       I  L  +R        + EEL  H++ +  +    G N +
Sbjct: 178 LG----GNQAKAEGGGNQEGIRRLSSQRPALRVISASAEELQAHEEKLAAIARSSGDNCL 233

Query: 237 WDR 239
           W +
Sbjct: 234 WLK 236


>gi|126724532|ref|ZP_01740375.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Rhodobacterales bacterium HTCC2150]
 gi|126705696|gb|EBA04786.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Rhodobacterales bacterium HTCC2150]
          Length = 230

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 90/234 (38%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTG D    DRI+EIGAVEL ++  T +T+  ++ P  R    EA ++HG+
Sbjct: 1   MRELVLDTETTGFDPFSGDRIVEIGAVELFNHMPTGKTYHQYINPQ-RAMPAEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL  +P F+ I   F DF        + HNA FD+ F+NAEL  + +  L   + +D
Sbjct: 60  GDEFLARQPVFADIAQAFVDFVGTD--LLVIHNASFDMKFLNAELDWLGRAKLPMEQSLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR+K P S   L++LC+R+G+    R KHGALLDS +L++VY++++ GG Q +FG 
Sbjct: 118 TLAIARKKFPGSPASLDALCRRFGVNNDAREKHGALLDSEILAEVYLELI-GGRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            T        +           R  PL  RI++EE   H + ++ L    +W +
Sbjct: 177 NTAAAASSGTDAG-FSEWRAQPRPNPLAPRISEEEAKAHREFVEKLADGGLWPK 229


>gi|167562346|ref|ZP_02355262.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis
           EO147]
 gi|167574356|ref|ZP_02367230.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis
           C6786]
          Length = 240

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 93/245 (37%), Positives = 137/245 (55%), Gaps = 13/245 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P GR + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRVIEIGCVELLNRRLTGNNLHFYVNP-GRDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ I  E  DF   ++AE I HNA FD+GF++AE   +         + +
Sbjct: 60  TTEFLSDKPKFAEIVDELRDFV--RDAELIIHNAPFDLGFLDAEFSLLGLPTFTDHCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                ++          P ++    D P+    T +EL  H+  +  L K+     +W +
Sbjct: 176 VIDMLDEGGDAHRNGDAPRMAFSGLDLPVLA-ATDDELAAHEAQLDALDKSVKGACVWRK 234

Query: 240 YISSN 244
              S 
Sbjct: 235 EAGSE 239


>gi|254252714|ref|ZP_04946032.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158]
 gi|124895323|gb|EAY69203.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158]
          Length = 244

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 133/239 (55%), Gaps = 13/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ +  +  +F   + AE I HNA FD+GF++AE   +   P     + +
Sbjct: 60  TTEFLSDKPKFAEVADQIREFV--RGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
                +D            +SL   D P+    + EEL  H   +  L K+     +W 
Sbjct: 176 VIDMLDDAATVGGAANGQRVSLAALDLPVLA-ASDEELAAHHAQLDELDKSVKGTCVWR 233


>gi|56698700|ref|YP_169077.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3]
 gi|56680437|gb|AAV97103.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3]
          Length = 241

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 95/247 (38%), Positives = 139/247 (56%), Gaps = 21/247 (8%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL ++  T  T+  ++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPETGDRIVEIGAVELWNHIATGNTYHQYINPE-RMMPAEAFGVHGI 59

Query: 66  TDE-------------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             +              L+DKP F+ +   F DF    ++  + HNA FD+ F+NAEL+ 
Sbjct: 60  GPDILEPPQQPEPGQVTLRDKPVFAKVGQAFRDFVA--DSHLVIHNASFDMKFLNAELRW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    +   R IDTL +ARRK P S   L++LC+R+GI  S+R  HGALLD+ +L++VY+
Sbjct: 118 MGLPEIPFDRAIDTLGMARRKFPGSPATLDALCRRFGIDNSNRVLHGALLDAEILAEVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++ GG Q +FG  T       +          + R  PL  RIT+ E   H + ++ LG
Sbjct: 178 ELI-GGKQPDFGLSTV---TTGDGPGQETAWRAMPRPTPLPARITEAERTAHAEFVEKLG 233

Query: 233 KNAIWDR 239
           +NA+W R
Sbjct: 234 ENAVWKR 240


>gi|119944269|ref|YP_941949.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
 gi|119862873|gb|ABM02350.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
          Length = 239

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 93/250 (37%), Positives = 138/250 (55%), Gaps = 22/250 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG++         RIIEIG VE+++   T R F V++ P+ R+ 
Sbjct: 1   MNTEKMIRQVVLDTETTGMNKGGTIYVGHRIIEIGCVEVINRRLTGRHFHVYVKPD-REI 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA+ +HGITDEFL DKP+FS I  EF +F   + AE + HNA FDVGF++ E + +NK
Sbjct: 60  DPEAIAVHGITDEFLHDKPAFSDIADEFIEFI--KGAELVIHNAPFDVGFMDQEFRFLNK 117

Query: 116 DPLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                   S I DTL +AR+ +P  R  L++LC+  GI   HR  HGALLD+ +L+DVY+
Sbjct: 118 RTKPTAEISTITDTLVMARKMYPGKRASLDALCRELGIDNKHRVLHGALLDAEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTL 231
            M  G  ++N       D    +         + K   PL     +++E   H+K +  +
Sbjct: 178 LMTGGQKKLNLSSSGQNDTNTGK--------RVRKTQSPLTIISASEDEQQAHEKRLDLI 229

Query: 232 GK--NAIWDR 239
            K  + +W  
Sbjct: 230 EKSASCLWRE 239


>gi|317490808|ref|ZP_07949244.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920355|gb|EFV41678.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 244

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 97/244 (39%), Positives = 144/244 (59%), Gaps = 21/244 (8%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+D+FL DKP+F+ I  EF +F   + AE + HNA FD+GF++ E +++N+D      
Sbjct: 66  HGISDDFLLDKPTFADIADEFLEFI--RGAELVIHNAPFDIGFMDYEFRKLNRDIPKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +ARR  P  RN L++LC RY I  + R+ HGALLDS +L+DVY+ M  G +
Sbjct: 124 FCKITDSLVMARRLFPGKRNSLDALCNRYEIDNTKRTLHGALLDSQILADVYLTMTGGQT 183

Query: 180 QINFGFKTNED--RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD---KTIQTLGKN 234
            + F  ++  +  R   E +K V  +  LK       R + EEL EH+     +Q  G +
Sbjct: 184 SLTFSMESEGEKPRPTGEVQKIVRKMQALK-----VVRASAEELAEHEHRLDLVQKKGGS 238

Query: 235 AIWD 238
            +W 
Sbjct: 239 CLWR 242


>gi|90416118|ref|ZP_01224051.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90332492|gb|EAS47689.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 239

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 95/239 (39%), Positives = 144/239 (60%), Gaps = 11/239 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S++ RIIEIG VEL+    T R +  ++ P  RK    A+++HGI
Sbjct: 1   MRQIVLDTETTGLETSQDHRIIEIGCVELVGRKLTGRHYHQYVNPQ-RKVDVGAMEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122
           TD+FL+DKP F ++  EF +F +   A+ + HNA FDVGFIN E+ ++N          R
Sbjct: 60  TDQFLEDKPLFETVAREFLEFVD--GADLVIHNAPFDVGFINHEIAKLNGAYQAIESGCR 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IIDTL++AR+KHP  +N+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M  G   +N
Sbjct: 118 IIDTLALARQKHPGQKNNLDALCKRYGVDNSQRDLHGALLDAEILADVYLLMTGGQVNLN 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238
              +   D      +  +  ++   R        ++EE++ H + ++ + K   N +W 
Sbjct: 178 ISGQQASDGGQDNSRSGIRRLAQ-DRQPLRVVTASREEIERHQQKLEAINKSSGNCLWM 235


>gi|86136750|ref|ZP_01055328.1| DNA polymerase III, epsilon subunit [Roseobacter sp. MED193]
 gi|85826074|gb|EAQ46271.1| DNA polymerase III, epsilon subunit [Roseobacter sp. MED193]
          Length = 243

 Score =  242 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 94/247 (38%), Positives = 144/247 (58%), Gaps = 21/247 (8%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVELL++  T  TF V++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPE-RSMPQEAFGVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             +DKP F+     F DF   +++  + HNA FD+ F+N EL R
Sbjct: 60  GPDLLEPPQKPEKGQVTLRDKPVFAKFGQAFLDFV--RDSRMVIHNASFDMKFLNFELDR 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    L   + +DTL++AR++ P S   L++LC+R+ I  S+R+ HGALLDS +L+DVY+
Sbjct: 118 MGLRTLPMEQALDTLAMARKRFPGSPATLDALCRRFQIDNSNRTLHGALLDSEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           ++  GG Q +FG  TN         + V +     R  PL +R+T +E + H+  ++ +G
Sbjct: 178 EL-SGGRQPDFGLSTN---ATAGGGQVVEDWRPAPRHTPLPSRLTAKEAEAHEAFVEKMG 233

Query: 233 KNAIWDR 239
           ++A+W++
Sbjct: 234 EDALWNQ 240


>gi|84389766|ref|ZP_00991318.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
 gi|84376867|gb|EAP93741.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
          Length = 255

 Score =  242 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 92/243 (37%), Positives = 139/243 (57%), Gaps = 20/243 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IV D ETTG++++        RI+EIGAVE+++   T R F V++ P+ R    EA+ 
Sbjct: 22  RIIVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRRLTGRHFHVYIKPD-RAIQEEAIG 80

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118
           +HGITDEFL DKP +  I  EF DF   + AE +AHNA FD GF++ E +++N       
Sbjct: 81  VHGITDEFLIDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLNSAIGKTD 138

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 139 DYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 198

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAI 236
           + + F      +   KE +      +   R      R T +E++ H   +  + K  + +
Sbjct: 199 TSLQF------NAGQKEGEGESIRRAESGRKSLKVLRATADEVEAHQSRLDLVEKSGSCL 252

Query: 237 WDR 239
           W +
Sbjct: 253 WRQ 255


>gi|161525206|ref|YP_001580218.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
           17616]
 gi|189350055|ref|YP_001945683.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
           17616]
 gi|160342635|gb|ABX15721.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC
           17616]
 gi|189334077|dbj|BAG43147.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 244

 Score =  242 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 96/240 (40%), Positives = 135/240 (56%), Gaps = 13/240 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARSGDRIIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ I  +  DF   + AE I HNA FD+GF++AE   +   P     + +
Sbjct: 60  TTEFLSDKPKFAEIAHQILDFV--KGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                +D            +SL   D P+    T EEL EH   +  L K+     +W +
Sbjct: 176 VIDMLDDDAGGAGAANGQRVSLAALDLPVLA-ATAEELAEHQAQLDDLDKSVKGACVWRQ 234


>gi|218710290|ref|YP_002417911.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32]
 gi|218323309|emb|CAV19486.1| DNA polymerase III, epsilon subunit [Vibrio splendidus LGP32]
          Length = 255

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 91/243 (37%), Positives = 139/243 (57%), Gaps = 20/243 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IV D ETTG++++        RI+EIGAVE+++   T R F V++ P+ R    EA+ 
Sbjct: 22  RIIVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYIKPD-RAIQEEAIG 80

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118
           +HGITDEFL DKP +  I  EF DF   + AE +AHNA FD GF++ E +++N       
Sbjct: 81  VHGITDEFLIDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLNPAIGKTD 138

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 139 DYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 198

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAI 236
           + + F      +   +E +      +   R      R T +E++ H   +  + K  + +
Sbjct: 199 TSLQF------NAGQQEGEGESIRRAESGRKSLKVLRATADEVEAHQSRLDLVEKSGSCL 252

Query: 237 WDR 239
           W +
Sbjct: 253 WRQ 255


>gi|254245771|ref|ZP_04939092.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|124870547|gb|EAY62263.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
          Length = 305

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 91/241 (37%), Positives = 134/241 (55%), Gaps = 13/241 (5%)

Query: 6   KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P  R + P AL +HG
Sbjct: 61  DMRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHG 119

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSR 122
           +T EFL DKP F+ +  +  DF   ++AE I HNA FD+GF++AE  R+   P       
Sbjct: 120 LTTEFLSDKPKFAEVAHQILDFV--KDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGG 177

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q +
Sbjct: 178 VIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDS 235

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
                 +D            +SL   D       +++EL  H   +  L K+     +W 
Sbjct: 236 LVIDMLDDAGADGSAANGKRVSLAALDL-AVVAASEDELAAHQAQLDELDKSVKGTCVWR 294

Query: 239 R 239
           +
Sbjct: 295 Q 295


>gi|323135821|ref|ZP_08070904.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242]
 gi|322398912|gb|EFY01431.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242]
          Length = 239

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 109/238 (45%), Positives = 148/238 (62%), Gaps = 10/238 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD  K DR++EIGAVE+L+   T R F  ++ P  R    EA ++HG+
Sbjct: 1   MREIVFDTETTGLDPSKGDRVVEIGAVEILNLIPTGRVFHAYIDPE-RDMPEEAFRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL     F  I  EF DF   +++  +AHNA+FDV FINAE   +N  PL P+RI+D
Sbjct: 60  SREFLSQHRKFREIAEEFIDFI--EDSPMVAHNAEFDVRFINAEFSMLNFAPLAPARIVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IARR HP S   L++LC+RYGI +S R KHGALLD+ LL++VY ++M GG Q     
Sbjct: 118 TLAIARRLHPGSPASLDALCQRYGIDLSRRDKHGALLDAGLLAEVYAELM-GGRQAALSL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
           +T         ++   +  L  R  PL  R+T  E + H   +  L K+AIWDRY++ 
Sbjct: 177 QTV-----SVSRRAQTSDLLRARPAPLEDRLTPAEDEAHRAFVAGLSKSAIWDRYLTG 229


>gi|221201955|ref|ZP_03574991.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
 gi|221204915|ref|ZP_03577932.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
 gi|221213892|ref|ZP_03586865.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
 gi|221166069|gb|EED98542.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
 gi|221175772|gb|EEE08202.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
 gi|221178038|gb|EEE10449.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
          Length = 244

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 96/240 (40%), Positives = 135/240 (56%), Gaps = 13/240 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRIIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ I  +  DF   + AE I HNA FD+GF++AE   +   P     + +
Sbjct: 60  TTEFLSDKPKFAEIAHQILDFV--KGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                +D            +SL   D P+    T EEL EH   +  L K+     +W +
Sbjct: 176 VIDMLDDDAGGAGAANGQRVSLAALDLPVLA-ATAEELAEHQAQLDDLDKSVKGACVWRQ 234


>gi|158421629|ref|YP_001522921.1| DNA polymerase III [Azorhizobium caulinodans ORS 571]
 gi|158328518|dbj|BAF86003.1| DNA polymerase III [Azorhizobium caulinodans ORS 571]
          Length = 240

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 94/236 (39%), Positives = 145/236 (61%), Gaps = 6/236 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++ K DR++EIG VE+++   T  TF V++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLEANKGDRVVEIGCVEMVNRILTGNTFHVYINPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +   F +F        + HNA FD+GF+NAEL R++++P+   R++D
Sbjct: 60  SSEFLSDKPKFAEVADAFLEFIA--GDTLVIHNAAFDIGFLNAELARLSREPIARDRVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+++ARRKHP +   L+ L KRYGI  S R KHGALLDS LL++VY +++ G   +  G 
Sbjct: 118 TVALARRKHPGASAKLDDLMKRYGIDASRRVKHGALLDSELLAEVYSELLGGRQAMLVGL 177

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
              ++            ++   R  PL +R++ EE+  H + I  +G+  IW++Y+
Sbjct: 178 --ADETSEAPRLVVEVAVAARARPVPLPSRLSAEEIAAHREFIGGMGEKGIWNQYL 231


>gi|254283824|ref|ZP_04958792.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR51-B]
 gi|219680027|gb|EED36376.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR51-B]
          Length = 244

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 93/247 (37%), Positives = 134/247 (54%), Gaps = 11/247 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTGL+  +  RIIEIG VEL++   T   +  ++ P  R+  P A+++HGI
Sbjct: 1   MRHVVLDTETTGLEVTQGHRIIEIGCVELVNRKLTGNHYHQYVQPQ-REIDPGAMEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122
           T +FL DKP+F  +  EF  F +   AE I HNA FDVGFI+AEL R+        D  R
Sbjct: 60  TPDFLADKPTFDRVADEFLAFID--GAELIIHNAPFDVGFIDAELDRLGARRTAVADHCR 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + D+L +ARRKHP  RN L++LC+RYG+  S R+ HGALLD+ +L+DV++ M  G + + 
Sbjct: 118 VTDSLVLARRKHPGQRNSLDALCQRYGVDNSTRTLHGALLDAEILADVFLLMTGGQTSLG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
                       +            R      R + EEL  H++ +  +    G   IW 
Sbjct: 178 LSDDEEGSLDTADNPDGGIRRLPTSRPPLRVMRASAEELARHEQRLDAIAAASGGPVIWR 237

Query: 239 RYISSNQ 245
              S+ +
Sbjct: 238 EQQSAAE 244


>gi|87119404|ref|ZP_01075302.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Marinomonas sp. MED121]
 gi|86165795|gb|EAQ67062.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Marinomonas sp. MED121]
          Length = 235

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 101/240 (42%), Positives = 143/240 (59%), Gaps = 16/240 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTG+D K   RIIEIG VE+LD   T   F V++ P+ R+   EA ++HGI
Sbjct: 2   MRQIILDTETTGIDPKQGHRIIEIGCVEMLDRKLTKNHFHVYINPD-RQVEEEAFQVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           +DEFL DKP F  +  +F ++   Q AE + HNA FDVGFI+ E  ++   P   D   +
Sbjct: 61  SDEFLADKPRFHQVAQDFLNYI--QGAELVIHNAPFDVGFIDHEFAKLGNFPKVADICSV 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL+ AR KHP  +N+L++LCKRYGI  SHR  HGALLDS +L+DVY+ M  G + +  
Sbjct: 119 FDTLAFARSKHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLLMTGGQTSLGL 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPL--FTRITKEELDEHDKTIQTLGKNA---IWD 238
           G   +       +  +VP I  L  D+P+    +  + ELD H++ +  + K A   +W 
Sbjct: 179 GDDED-----GADGMSVPTIRRLSPDRPMIKVLKANQAELDLHNERLDLIEKQAGKVLWR 233


>gi|260913733|ref|ZP_05920209.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella
           dagmatis ATCC 43325]
 gi|260632272|gb|EEX50447.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella
           dagmatis ATCC 43325]
          Length = 253

 Score =  241 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 89/246 (36%), Positives = 143/246 (58%), Gaps = 17/246 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ P+ R   P+A+K+
Sbjct: 9   RQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPD-RPVDPDAIKV 67

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDP 120
           HGITDE L DKP+F+ I  +F ++   Q AE + HNA FD+GF++ E  ++    +  + 
Sbjct: 68  HGITDEMLADKPTFNEIAQQFIEYI--QGAELLIHNASFDIGFMDYEFSKLNIGLNTSEI 125

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             I DTL +AR+ +P  RN L++LC R GI  S R+ HGALLD+ +L+DVY+ M  G  Q
Sbjct: 126 CLITDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMTGG--Q 183

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAI 236
            +   ++  +      ++ V +  +  +D       T++EL  H + I+ L K    N +
Sbjct: 184 TSLFDESEPEIIVATTQEEVQSAVVFSQDLKKLM-PTEDELQAHIEYIKLLNKKSKGNCL 242

Query: 237 WDRYIS 242
           W++ +S
Sbjct: 243 WEKRLS 248


>gi|170697939|ref|ZP_02889022.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170137105|gb|EDT05350.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 244

 Score =  241 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 91/239 (38%), Positives = 134/239 (56%), Gaps = 13/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  DR+IEIG VELL+   T     +++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL+DKP F+ +  +  DF   + AE I HNA FD+GF++AE  R++  P       +
Sbjct: 60  TTEFLRDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
                +D            +SL     P+    + +EL  H   +  L K+     +W 
Sbjct: 176 VIDMLDDAGADGSAANGQRVSLASLVLPVLA-ASDDELAAHQTQLDELDKSVKGTCVWR 233


>gi|312795584|ref|YP_004028506.1| DNA polymerase III, epsilon chain [Burkholderia rhizoxinica HKI
           454]
 gi|312167359|emb|CBW74362.1| DNA polymerase III, epsilon chain (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 247

 Score =  241 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 92/240 (38%), Positives = 133/240 (55%), Gaps = 14/240 (5%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTGL++K  DRIIEIG VE+++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRLLVLDTETTGLNAKGGDRIIEIGCVEIVNRQLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL+DKP F+ I     DF   ++A+ I HNA FD+GF+NAE   +   P       +
Sbjct: 60  TTEFLRDKPKFAEIADALRDFV--KDADIIIHNAPFDIGFLNAEFAMLGLPPFCDHCGEV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A+   P  RN L++LC+R+GI+ +HR+ HGALLD+ LL+DVY+ M  G  Q + 
Sbjct: 118 IDTLVQAKAMFPGKRNSLDALCERFGISNAHRTLHGALLDAELLADVYLAMTRG--QESL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                 D        T   +SL + + P+ +  + +EL  H   +  L K      +W  
Sbjct: 176 VIDMLADTPGSGSVATT-RVSLAQFELPVIS-ASDDELAAHAGVLDELDKARKGPCVWRE 233


>gi|146337369|ref|YP_001202417.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. ORS278]
 gi|146190175|emb|CAL74167.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Bradyrhizobium sp. ORS278]
          Length = 232

 Score =  241 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 95/238 (39%), Positives = 137/238 (57%), Gaps = 8/238 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD+ + DR++EIG VE+++   T + F  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHRYINPQ-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F  +  +F  F    +A  + HNA FD+GFINAEL R+ +  +   R++D
Sbjct: 60  STEFLSDKPLFHEVVEDFLAFIG--DAPLVIHNASFDIGFINAELDRVKRAAIPRERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VY+ ++ G  Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLV-GARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
             +            P     +RD PL  R+T+ E + H   + TLG   IW  +++ 
Sbjct: 177 TQDAQEIRIGNAGDTPR---RQRDVPLAPRVTEAEREAHRAFVATLGDKPIWMDFLTG 231


>gi|220921281|ref|YP_002496582.1| DNA polymerase III subunit epsilon [Methylobacterium nodulans ORS
           2060]
 gi|219945887|gb|ACL56279.1| DNA polymerase III, epsilon subunit [Methylobacterium nodulans ORS
           2060]
          Length = 238

 Score =  241 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 100/239 (41%), Positives = 150/239 (62%), Gaps = 10/239 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +R+IV D ETTG D+K DR+IEIG +ELL++  T R F  ++ P  R  S  A  +HG++
Sbjct: 2   LREIVLDTETTGTDAKTDRLIEIGGIELLNHIPTGREFHRYINPQ-RAVSQGAFAVHGLS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSRI 123
           D FL DKP F+ I  +F DF    +A ++ HNA FDVGF+NAE  R+ +    P++ S +
Sbjct: 61  DAFLADKPLFAEILPDFLDFCG--DATFVIHNAAFDVGFLNAEYARLGETAPPPIELSAV 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL++ARRKHP++ N+L++LC RYGI  S R+KHGALLD+ +L++VYI+++ GG Q + 
Sbjct: 119 VDTLALARRKHPNAANNLDALCARYGIDNSRRTKHGALLDAQILAEVYIELL-GGKQTSL 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           G         +  ++  P   +    + + +R+T  E   H     +LG NA+W  YI 
Sbjct: 178 GLTLEAASIVRVTQEAGP---VAHGPRSVRSRLTDAERTAHAAFTASLGANAVWRDYIG 233


>gi|153829952|ref|ZP_01982619.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39]
 gi|148874587|gb|EDL72722.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39]
          Length = 247

 Score =  241 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 93/243 (38%), Positives = 139/243 (57%), Gaps = 17/243 (6%)

Query: 7   MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            R +V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R    EA+
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAI 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DP 117
           ++HGITDEFLKDKP +  +  EF DF   + AE +AHNA FDVGF++ E  +++      
Sbjct: 69  EVHGITDEFLKDKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLSGAIGKT 126

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G
Sbjct: 127 SDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235
            + + F   T   +   E    +   +  +R        + +EL  H   +  + K+   
Sbjct: 187 QTSLQFSSAT---QNSGELSAELLKRARSERKALKVLAASADELQAHQDRLDIVAKSGTC 243

Query: 236 IWD 238
           +W 
Sbjct: 244 LWR 246


>gi|307246199|ref|ZP_07528280.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255179|ref|ZP_07536997.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259617|ref|ZP_07541341.1| hypothetical protein appser11_14150 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306852808|gb|EFM85032.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862052|gb|EFM94028.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866262|gb|EFM98126.1| hypothetical protein appser11_14150 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 257

 Score =  241 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 90/251 (35%), Positives = 140/251 (55%), Gaps = 16/251 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKP F+ +  EF +F   + AE I HNA FDV F++ E   +  
Sbjct: 60  EEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117

Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P    +   + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            MM GG     G +             +  I+  +    +   +++EE   H++ ++ + 
Sbjct: 178 -MMTGGQLALLGEEDATSNHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236

Query: 233 K----NAIWDR 239
           K    N IW R
Sbjct: 237 KKSKGNCIWMR 247


>gi|254480788|ref|ZP_05094035.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2148]
 gi|214039371|gb|EEB80031.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2148]
          Length = 244

 Score =  241 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 95/244 (38%), Positives = 140/244 (57%), Gaps = 12/244 (4%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S+  RIIEIG VEL     T   +  ++ PN R+    A+++HGI
Sbjct: 1   MRQIVLDTETTGLEVSQGHRIIEIGCVELDTRRLTGNHYHQYINPN-REIDQGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122
           T+EFLKDKPSF  +F EF +F   + +E + HNA FD+GF+N+E+QR+  D     D  +
Sbjct: 60  TNEFLKDKPSFERVFREFLEFV--EGSELVIHNAPFDLGFLNSEIQRLEPDAPRLEDRCK 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR KHP  RN L++LC+RYG+  S R  HGALLDS +L+DVY+ M  G + + 
Sbjct: 118 IVDTLVMARGKHPGQRNSLDALCQRYGVDNSQRDLHGALLDSEILADVYLLMTGGQTALQ 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
                +         + +  +   ++  P     + EEL  H+  ++ +    G   +W 
Sbjct: 178 LSDNDSGAESGASRSERIIRLDAGRQALP-VIAASTEELAAHEAQLEAISSASGGKVLWK 236

Query: 239 RYIS 242
               
Sbjct: 237 EIPG 240


>gi|90581658|ref|ZP_01237447.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
 gi|90437142|gb|EAS62344.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
          Length = 241

 Score =  241 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 96/247 (38%), Positives = 146/247 (59%), Gaps = 17/247 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R IVFD ETTG++      +  RIIEIGAVE+++   T +TF V++ P+ R   
Sbjct: 1   MKATNQRIIVFDTETTGMNMTGPHYEGHRIIEIGAVEIINRKLTGKTFHVYIKPD-RPID 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114
           PEA+ +HGITDEFL  KPS++ I  EF DF +   AE +AHNA FD+GF++ E Q +   
Sbjct: 60  PEAIDVHGITDEFLIGKPSYADIHQEFIDFID--GAELVAHNASFDIGFMDYEFQLMGSD 117

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            K   D  ++ DTL +A+R  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 118 LKKTEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLM 177

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           M  G + +     + +D    E++  +  + + +R        + +EL  H++ +  +GK
Sbjct: 178 MTGGQTSLKL---SGDDEGDSEKEFAIKRL-VSERKGLKVICASADELVSHEERLDLIGK 233

Query: 234 NA--IWD 238
               +W 
Sbjct: 234 KTDVLWR 240


>gi|167836205|ref|ZP_02463088.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           MSMB43]
          Length = 241

 Score =  241 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 91/246 (36%), Positives = 138/246 (56%), Gaps = 13/246 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIE+G VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGSNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ I  +  DF   ++AE I HNA FD+GF++AE   +         + +
Sbjct: 60  TTEFLSDKPKFAEIVDQLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPSFTDHCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239
                ++          P ++    D P+    T EEL  H+  +  L K    + +W +
Sbjct: 176 VIDMLDEAGDAHRNSNEPRMAFSGLDLPVLA-ATGEELAAHEAQLDALDKSVKGSCVWRK 234

Query: 240 YISSNQ 245
             ++ +
Sbjct: 235 EAAAGE 240


>gi|114321140|ref|YP_742823.1| DNA polymerase III, epsilon subunit [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227534|gb|ABI57333.1| DNA polymerase III, epsilon subunit [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 243

 Score =  241 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 90/241 (37%), Positives = 137/241 (56%), Gaps = 13/241 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S+ DR+IEIG VEL+D   T   F  +L P+ R+   EA+++HGI
Sbjct: 1   MRQIVLDTETTGLEWSQGDRVIEIGCVELVDRRPTGNNFHQYLNPD-REVPQEAVEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122
           T++FL DKP F  +   F ++   + +E + HNA FDVGF++ EL R+ +      D + 
Sbjct: 60  TNDFLADKPRFHEVAERFVEYI--RGSELVIHNAAFDVGFLDYELSRLGRGWGRVEDFAS 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR++HP  RN L++LCKRY +  + R  HGALLD+ +L+DVY+ M  G   + 
Sbjct: 118 VLDTLLLARQRHPGQRNSLDALCKRYDVDNTQRELHGALLDARILADVYLAMTGGQKAL- 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
           F     E +  + E   +  +    R +    R  + E   H+  +  + K       W 
Sbjct: 177 FTLDEEEAQAHEGEGGGIRRLP-SDRPRLAVVRAGEAERRAHEALLDRIDKASGGGCRWR 235

Query: 239 R 239
           R
Sbjct: 236 R 236


>gi|254491084|ref|ZP_05104265.1| DNA polymerase III, epsilon subunit [Methylophaga thiooxidans
           DMS010]
 gi|224463597|gb|EEF79865.1| DNA polymerase III, epsilon subunit [Methylophaga thiooxydans
           DMS010]
          Length = 245

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 92/245 (37%), Positives = 142/245 (57%), Gaps = 14/245 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M    + R+++ D ETTG+  + + RIIEIG VE+++   T +TF  ++ P  R     A
Sbjct: 1   MAELTQKRQVILDTETTGISTADDHRIIEIGCVEMVNRRLTGQTFHQYINPQ-RDIDAGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-- 117
           +++HGIT+EFL DKP F+ I  EF  F   + AE + HNA FDVGFIN EL +++ +   
Sbjct: 60  IEVHGITNEFLADKPLFTEIAEEFLSFI--EGAELVIHNAPFDVGFINHELAKLDGETRR 117

Query: 118 -LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
               S ++DTL +AR KHP  +N+L++LCKRY +  ++R  HGALLD+ +L+DVY+ M  
Sbjct: 118 VETLSTVLDTLKMARDKHPGQKNNLDALCKRYDVNNANRELHGALLDAEILADVYLAMTG 177

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--- 233
           G  Q++      ED   K+       I+ LKR+  +  +   +EL  H   ++ + K   
Sbjct: 178 G--QVSLTLMAKEDATPKKGDGQA-EITQLKRESLMVLKANDDELAAHQDMLEKVNKASD 234

Query: 234 -NAIW 237
              +W
Sbjct: 235 GQCVW 239


>gi|75674304|ref|YP_316725.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi
           Nb-255]
 gi|74419174|gb|ABA03373.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi
           Nb-255]
          Length = 239

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 96/239 (40%), Positives = 140/239 (58%), Gaps = 9/239 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T +TF  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEMFNRMPTGQTFHRYINPE-RDMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL DKP F+ +  EF +F    +A  + HNA FD+ FINAEL R+ +  +   R++D
Sbjct: 60  SSDFLADKPLFAHVVDEFLEFIG--DAPLVIHNASFDISFINAELDRLKRQAIGRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++ G  Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLI-GARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
                R    ++     +   +R  PL +R+T  +   H + I TLG+ AIW  ++  +
Sbjct: 177 VETAPR----QRGGSLEMPRRQRTVPLASRVTAADRIAHREFIATLGEKAIWMEFLEQD 231


>gi|292487330|ref|YP_003530202.1| DNA polymerase III subunit epsilon [Erwinia amylovora CFBP1430]
 gi|292898576|ref|YP_003537945.1| DNA polymerase III subunit epsilon [Erwinia amylovora ATCC 49946]
 gi|291198424|emb|CBJ45532.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC 49946]
 gi|291552749|emb|CBA19794.1| DNA polymerase III epsilon subunit [Erwinia amylovora CFBP1430]
 gi|312171436|emb|CBX79694.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC
           BAA-2158]
          Length = 249

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 89/249 (35%), Positives = 141/249 (56%), Gaps = 17/249 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F V+L P+ R  
Sbjct: 1   MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLI 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI DEFL DKP+F+ I  +F  + N   AE + HNA FD+GF++ E  ++ +
Sbjct: 60  DPEAFGVHGIADEFLLDKPTFAQIADDFLAYIN--GAELVIHNASFDIGFMDYEFAKLQR 117

Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                    +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLDS +L++V++
Sbjct: 118 GIAKTETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231
            M  G + + F  +   +R  +++ +T+  I+          R +++EL  H+  +  + 
Sbjct: 178 TMTGGQTSLAFSME--GEREKQQDGETIQRIAR-PASGLRVVRASEQELMAHEARLDLVE 234

Query: 232 --GKNAIWD 238
             G + +W 
Sbjct: 235 KKGGSCLWR 243


>gi|148979853|ref|ZP_01815731.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
 gi|145961545|gb|EDK26846.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
          Length = 255

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 89/243 (36%), Positives = 137/243 (56%), Gaps = 20/243 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++++        RI+EIGAVE+++   T R F V++ P+ R    EA+ 
Sbjct: 22  RIVVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYIKPD-RAIQEEAIG 80

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118
           +HGITDEFL DKP +  I  EF DF   + AE +AHNA FD GF++ E ++++       
Sbjct: 81  VHGITDEFLVDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLDPTIGKTD 138

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL +A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 139 DYCKVTDTLDMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 198

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAI 236
           + + F      +   +E            R      R T +E++ H   +  + K  + +
Sbjct: 199 TSLQF------NAGQQEGGVESIRRVESGRKSLKVLRATADEVEAHQSRLDLVEKSGSCL 252

Query: 237 WDR 239
           W +
Sbjct: 253 WRQ 255


>gi|190150601|ref|YP_001969126.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303252089|ref|ZP_07338258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|189915732|gb|ACE61984.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302649071|gb|EFL79258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 257

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 90/251 (35%), Positives = 140/251 (55%), Gaps = 16/251 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKP F+ +  EF +F   + AE I HNA FDV F++ E   +  
Sbjct: 60  DEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117

Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P    +   + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            MM GG     G +             +  I+  +    +   +++EE   H++ ++ + 
Sbjct: 178 -MMTGGQLALLGEEDATATHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236

Query: 233 K----NAIWDR 239
           K    N IW R
Sbjct: 237 KKSKGNCIWMR 247


>gi|91974903|ref|YP_567562.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB5]
 gi|91681359|gb|ABE37661.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 231

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 98/238 (41%), Positives = 138/238 (57%), Gaps = 9/238 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T + F  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIYNRMPTGQAFHRYINPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +  EF DF    +A  + HNA FD GF+NAEL R+++  +   R++D
Sbjct: 60  SAEFLADKPLFAQVVDEFLDFIG--DAPLVIHNASFDAGFLNAELARLSRAAIPRERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++          
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILA 177

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
           +   +R  +   K        +R  PL  R+T+ +LD H   I T+G  AIW  Y + 
Sbjct: 178 EVPSERAGQGGDK-----PRRQRSTPLAARVTELDLDAHRAFIATMGDKAIWKEYPAG 230


>gi|120554453|ref|YP_958804.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
 gi|120324302|gb|ABM18617.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
          Length = 236

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 93/244 (38%), Positives = 147/244 (60%), Gaps = 14/244 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D  +  RIIEIG VE+++   T R + V++ P  R+   EA+ +HGI
Sbjct: 1   MRQIVLDTETTGIDPNEGHRIIEIGCVEVIERELTGRNYHVYINPE-REVEAEAITVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRI 123
           T+EFL DKP F+ +  EF++F   + AE + HNA FDVGF+++E  R+   +   D   I
Sbjct: 60  TNEFLADKPKFAEVADEFFEFI--KGAELVIHNAAFDVGFMDSEFARLKPVRKTADHCGI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +D+L+IAR+KHP  +N+L++LCKRYG+  S+R  HGALLD+ +L+DVY+ M  G + ++ 
Sbjct: 118 VDSLAIARKKHPGQKNNLDALCKRYGVDNSNRDLHGALLDAEILADVYLLMTGGQTALSL 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDRY 240
              + ++      ++        +R      R T +E   HD+ +  + K A   +W R 
Sbjct: 178 DAGSGDEGGDGGIRRIS-----GERAPLAVVRATSDEASAHDEFMAMMEKQAGETVWSRL 232

Query: 241 ISSN 244
            ++ 
Sbjct: 233 QATE 236


>gi|78065897|ref|YP_368666.1| DNA polymerase III subunit epsilon [Burkholderia sp. 383]
 gi|77966642|gb|ABB08022.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
          Length = 244

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 93/239 (38%), Positives = 136/239 (56%), Gaps = 13/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ + ++  DF   Q+AE I HNA FD+GF++AE  R++  P       +
Sbjct: 60  TTEFLSDKPKFAEVANQIRDFV--QDAELIIHNAPFDLGFLDAEFARLDLPPFTKHCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
                +D            +SL   D P+    + +EL  H   +  L K+     +W 
Sbjct: 176 VIDMLDDAGADGGAGNGQRVSLAALDLPVVA-ASDDELAAHQAQLDELDKSVKGTCVWR 233


>gi|154251704|ref|YP_001412528.1| DNA polymerase III subunit epsilon [Parvibaculum lavamentivorans
           DS-1]
 gi|154155654|gb|ABS62871.1| DNA polymerase III, epsilon subunit [Parvibaculum lavamentivorans
           DS-1]
          Length = 228

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 93/232 (40%), Positives = 137/232 (59%), Gaps = 11/232 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+      R++EIG +EL ++  T + F  ++ P  R     A ++HG+
Sbjct: 1   MREIVLDTETTGISPNDGHRLVEIGCLELFNHVVTGKYFHAYIDPE-RDMPEGAFRIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL+ KP F+ +  +F  F  E     + HNA FD+GFINAEL+RI +  L  SR  D
Sbjct: 60  SSDFLRGKPKFAEVADDFLAFIGED--PLVIHNAAFDMGFINAELKRIGRPALPVSRATD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IARRK P ++N L++LC+R+G+  S R+KHGALLDS LL++VY+++M GG Q     
Sbjct: 118 TLDIARRKFPGAQNSLDALCRRFGVDNSGRTKHGALLDSELLAEVYLELM-GGRQPGLVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           + +      E       ++   RD  L  R+T+ E   HD  + TLG   +W
Sbjct: 177 QADYAGMKGE------RVTRAPRDIALPPRLTEAEKAAHDAFVATLGGEPLW 222


>gi|115351214|ref|YP_773053.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD]
 gi|115281202|gb|ABI86719.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
          Length = 244

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 91/240 (37%), Positives = 136/240 (56%), Gaps = 13/240 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  DR+IEIG VELL+   T     +++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ +  +  DF   ++AE I HNA FD+GF++AE  R++  P       +
Sbjct: 60  TTEFLSDKPKFAEVVDQIRDFV--KDAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                +D            +SL     P+ +  + +EL  H   +  L K+     +W +
Sbjct: 176 VIDMLDDAGADGGAANGQRVSLASLALPVLS-ASDDELAAHQTQLDELDKSVKGTCVWRQ 234


>gi|172060228|ref|YP_001807880.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6]
 gi|171992745|gb|ACB63664.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 244

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 91/245 (37%), Positives = 135/245 (55%), Gaps = 13/245 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  DR+IEIG VELL+   T     +++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ +  +  DF   + AE I HNA FD+GF++AE  R++  P       +
Sbjct: 60  TTEFLSDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                +D            +SL     P+    + +EL  H   +  L K+     +W +
Sbjct: 176 VIDMLDDAGADGGAANGQRVSLASLALPVLA-ASDDELAAHQTQLDELDKSVKGTCVWRQ 234

Query: 240 YISSN 244
               +
Sbjct: 235 SAEVD 239


>gi|254466659|ref|ZP_05080070.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I]
 gi|206687567|gb|EDZ48049.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I]
          Length = 241

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 93/246 (37%), Positives = 138/246 (56%), Gaps = 21/246 (8%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D    DRI+EIGAVEL ++  T +TF  ++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELYNHMPTGKTFHEYINPE-RSMPAEAFSVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             +DKP F+ I  +F DF   Q++  + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQKPEPGAVTLRDKPVFAKIGRKFLDFV--QDSRLVIHNASFDMKFLNAELDW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    L   + +DTL++AR++ P S   L++LC+R+ I  ++R+ HGALLDS +L+DVY+
Sbjct: 118 MGLPKLPMDQALDTLAMARKRFPGSPATLDALCRRFNIDNTNRTLHGALLDSEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++ GG Q +FG          + +    +   + R  PL  RIT EE   H+  +  LG
Sbjct: 178 ELI-GGRQPDFGLSAQSSSSSAQVED---DWRPVPRSAPLPARITAEEQAAHEAFVAKLG 233

Query: 233 KNAIWD 238
             A+W 
Sbjct: 234 DAALWK 239


>gi|171318244|ref|ZP_02907407.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171096588|gb|EDT41482.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 244

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 135/239 (56%), Gaps = 13/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  DR+IEIG VELL+   T     +++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ +  +  DF   ++AE I HNA FD+GF++AE  R++  P       +
Sbjct: 60  TTEFLSDKPKFAEVVDQIRDFV--KDAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
                +D            +SL   D P+    + +EL  H   +  L K+     +W 
Sbjct: 176 VIDMLDDAGADGGAANGQRVSLASLDLPVLA-ASDDELAAHQTQLDELDKSVKGTCVWR 233


>gi|303250637|ref|ZP_07336834.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650625|gb|EFL80784.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 257

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 90/251 (35%), Positives = 140/251 (55%), Gaps = 16/251 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKP F+ +  EF +F   + AE I HNA FDV F++ E   +  
Sbjct: 60  EEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117

Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P    +   + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            MM GG     G +             +  I+  +    +   +++EE   H++ ++ + 
Sbjct: 178 -MMTGGQLALLGEEDATATHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236

Query: 233 K----NAIWDR 239
           K    N IW R
Sbjct: 237 KKSKGNCIWMR 247


>gi|251788641|ref|YP_003003362.1| DNA polymerase III subunit epsilon [Dickeya zeae Ech1591]
 gi|247537262|gb|ACT05883.1| DNA polymerase III, epsilon subunit [Dickeya zeae Ech1591]
          Length = 244

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 89/242 (36%), Positives = 139/242 (57%), Gaps = 16/242 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYLRPD-RLVDPEAYNI 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL DKP+++ +  +F DF   + AE + HNA FD+GF++ E + + +D      
Sbjct: 66  HGISDEFLVDKPTYADVADDFLDFI--RGAELVIHNASFDIGFMDYEFRLLGRDIPKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            + F  +  E +    + +T+  IS            + EEL  H++ +  +   G + +
Sbjct: 184 SLAFSME-GEGQQQAVQTETIQRISR-PASALAVLYASDEELIAHEQRLDLIMKKGGSCL 241

Query: 237 WD 238
           W 
Sbjct: 242 WR 243


>gi|271501671|ref|YP_003334697.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech586]
 gi|270345226|gb|ACZ77991.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech586]
          Length = 244

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 139/242 (57%), Gaps = 16/242 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYLRPD-RLIDPEAYNV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL DKP+++ +  +F DF   + AE + HNA FD+GF++ E + + +D      
Sbjct: 66  HGISDEFLADKPTYAEVADDFIDFI--RGAELVIHNASFDIGFMDYEFRLLGRDIPKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            + F  +  E +    + +T+  IS            + +EL  H++ +  +   G + +
Sbjct: 184 SLAFSME-GESQQQTVQAETIQRISR-PTSALTVLYASDDELVAHEQRLDLIMKKGGSCL 241

Query: 237 WD 238
           W 
Sbjct: 242 WR 243


>gi|312883833|ref|ZP_07743552.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368582|gb|EFP96115.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 244

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 93/245 (37%), Positives = 141/245 (57%), Gaps = 19/245 (7%)

Query: 5   NKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           ++ R IV D ETTG++       +  RIIEIGAVE+++   T R F V++ P+ R    E
Sbjct: 8   DQHRIIVLDTETTGMNLEGGPHYQGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RDIQAE 66

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---K 115
           A+ +HGITDEFL+DKP +  + +EF  F N   AE +AHNA FDVGF++ E   ++    
Sbjct: 67  AVGVHGITDEFLRDKPEYKDVHAEFLAFIN--GAELVAHNASFDVGFMDYEFSMLDASIG 124

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M 
Sbjct: 125 KTAQYCKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMT 184

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN- 234
            G + + F   +  +   +  K+         R      R T +E+D H+K ++ + KN 
Sbjct: 185 GGQTSLQFNAGSASEEGVESIKRAAQG-----RKALKVLRATADEIDAHEKRLELIEKNG 239

Query: 235 -AIWD 238
             +W 
Sbjct: 240 HCLWR 244


>gi|238750479|ref|ZP_04611980.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380]
 gi|238711410|gb|EEQ03627.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380]
          Length = 259

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 87/255 (34%), Positives = 142/255 (55%), Gaps = 17/255 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   
Sbjct: 6   MQVTPTRQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLID 64

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA  +HGI+DEFL DKP+F+ I  EF +F   + AE + HNA FD+GF++ E + + +D
Sbjct: 65  PEAYGVHGISDEFLADKPTFADITPEFLEFI--RGAELVIHNAAFDIGFMDYEFRMLQQD 122

Query: 117 PLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                    I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ 
Sbjct: 123 IPKTETFCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLA 182

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-- 231
           M  G + ++F  +   D+      + +  I+             ++EL  H+  +  +  
Sbjct: 183 MTGGQTSLSFSME--GDQSQNNSSEDIQRITR-PASGLKIIYAAEDELKAHESRLDLVMK 239

Query: 232 -GKNAIWDRYISSNQ 245
            G + +W   + + +
Sbjct: 240 KGGSCLWRMPLDTEE 254


>gi|76810101|ref|YP_333003.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           1710b]
 gi|121601053|ref|YP_992607.1| DNA polymerase III subunit epsilon [Burkholderia mallei SAVP1]
 gi|124385495|ref|YP_001026592.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10229]
 gi|126441990|ref|YP_001058508.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 668]
 gi|126455280|ref|YP_001065768.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           1106a]
 gi|134282747|ref|ZP_01769450.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305]
 gi|217423557|ref|ZP_03455058.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576]
 gi|226196200|ref|ZP_03791785.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237811761|ref|YP_002896212.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238563612|ref|ZP_00438559.2| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse
           4]
 gi|242318034|ref|ZP_04817050.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1106b]
 gi|251767848|ref|ZP_02268597.2| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20]
 gi|254177751|ref|ZP_04884406.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
           10399]
 gi|254180217|ref|ZP_04886816.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1655]
 gi|254197669|ref|ZP_04904091.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13]
 gi|254199436|ref|ZP_04905802.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH]
 gi|254258454|ref|ZP_04949508.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1710a]
 gi|254298053|ref|ZP_04965506.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           406e]
 gi|254358851|ref|ZP_04975124.1| DNA polymerase III, epsilon subunit [Burkholderia mallei
           2002721280]
 gi|76579554|gb|ABA49029.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1710b]
 gi|121229863|gb|ABM52381.1| DNA polymerase III, epsilon subunit [Burkholderia mallei SAVP1]
 gi|124293515|gb|ABN02784.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC
           10229]
 gi|126221483|gb|ABN84989.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 668]
 gi|126228922|gb|ABN92462.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1106a]
 gi|134245833|gb|EBA45924.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305]
 gi|147749032|gb|EDK56106.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH]
 gi|148027978|gb|EDK85999.1| DNA polymerase III, epsilon subunit [Burkholderia mallei
           2002721280]
 gi|157807726|gb|EDO84896.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           406e]
 gi|160698790|gb|EDP88760.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
           10399]
 gi|169654410|gb|EDS87103.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13]
 gi|184210757|gb|EDU07800.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1655]
 gi|217393415|gb|EEC33436.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576]
 gi|225931786|gb|EEH27788.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237504517|gb|ACQ96835.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238520320|gb|EEP83781.1| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse
           4]
 gi|242141273|gb|EES27675.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1106b]
 gi|243061566|gb|EES43752.1| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20]
 gi|254217143|gb|EET06527.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1710a]
          Length = 253

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 92/244 (37%), Positives = 135/244 (55%), Gaps = 13/244 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R   MR+I+ D ETTGL+++  DRIIEIG VELL+   T +    ++ P  R + P AL 
Sbjct: 10  RFPDMRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGKNLHFYVNPE-RDSDPGALA 68

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--D 119
           +HG+T EFL DKP F+ I     DF   ++AE I HNA FD+GF++AE   +        
Sbjct: 69  VHGLTTEFLSDKPKFAEIVDPLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPSFTDH 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            + +IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  
Sbjct: 127 CAGVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG-- 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----A 235
           Q +      ++          P ++    D P+    T  EL  H+  +  L K+     
Sbjct: 185 QESLVIDMLDEAGDAHRNGDAPRMAFSGLDLPVLA-ATDAELAAHEAQLDALDKSAKGVC 243

Query: 236 IWDR 239
           +W +
Sbjct: 244 VWRK 247


>gi|293390398|ref|ZP_06634732.1| DNA polymerase III, epsilon subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950932|gb|EFE01051.1| DNA polymerase III, epsilon subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 253

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 90/249 (36%), Positives = 142/249 (57%), Gaps = 17/249 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           I+ N  R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ PN R   
Sbjct: 3   IQINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPN-RPVD 61

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P+A+K+HGITDE L DKP FS   +EF ++   + AE + HNA FDVGF++ E  ++N  
Sbjct: 62  PDAIKVHGITDEMLADKPDFSQAANEFIEYI--KGAELLIHNAPFDVGFMDYEFAKLNLP 119

Query: 117 PLDPSRII--DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  +  DTL++AR+ +P  +N+L++LC R GI  S R+ HGALLD+ +L+DVY+ M
Sbjct: 120 IKTNDICLVTDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLAM 179

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233
             G + +   F  +E    +   +     +++          T+EEL  H + ++ + K 
Sbjct: 180 TGGQTSL---FDESEPEIIQHAGEQQVQSAVVFSHNLRLLTPTEEELQAHLEYLKLINKK 236

Query: 234 ---NAIWDR 239
              N +W+R
Sbjct: 237 SRDNCLWER 245


>gi|260581298|ref|ZP_05849115.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW]
 gi|260092047|gb|EEW75993.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW]
          Length = 256

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 94/258 (36%), Positives = 146/258 (56%), Gaps = 19/258 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175

Query: 174 MMVGGSQINFGFKTNED---RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           M  G + +    ++ E    R  +E+       ++         + T +EL  H + ++ 
Sbjct: 176 MTGGQTNLFDEEESVESGVIRVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKM 235

Query: 231 LGK----NAIWDRYISSN 244
           + K    N +WD+   +N
Sbjct: 236 MNKKSGNNCLWDKRFGNN 253


>gi|329891169|ref|ZP_08269512.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC
           11568]
 gi|328846470|gb|EGF96034.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC
           11568]
          Length = 241

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 89/235 (37%), Positives = 136/235 (57%), Gaps = 10/235 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG D K  DR+IE+G +E+ D   T RTF  F+ P  R   P+A+K+HGIT
Sbjct: 3   REIVLDTETTGFDPKTGDRLIEVGCIEIEDLLPTGRTFHRFINPE-RLIPPDAIKVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +KD P F  +  +  +F    +A  IAHNA FD  FI+ E+ RI + P    R IDT
Sbjct: 62  DDKVKDAPKFHEVVDDLMEFLG--DAPLIAHNANFDRNFIDFEIGRIGRTPPPQDRWIDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LCKRY I++  R+ HGAL+D+ LL++VY+++  GG +      
Sbjct: 120 LALAQKRFPGMANSLDALCKRYKISLVERTLHGALIDARLLAEVYLEL-RGGKERALDLT 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWDRY 240
           +          +T   ++   R +PL + +T EE   H   +  T+   ++W  Y
Sbjct: 179 STR----GGAAETAERVAYGARPRPLPSFVTAEEEAAHLAFLKATIKDFSLWAGY 229


>gi|238897890|ref|YP_002923569.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465647|gb|ACQ67421.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 241

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 95/242 (39%), Positives = 140/242 (57%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTGL+      +   IIEIGAVE+++   T +TF  ++ PN R+  PEA ++
Sbjct: 3   RQIVLDTETTGLNKTGPHYEGHNIIEIGAVEVINRRLTGKTFHTYVRPN-RQVDPEAYQI 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI+DEFL DKP FS IFS+F++F   + +E I HNA FD+GF++ E   + ++    + 
Sbjct: 62  HGISDEFLSDKPRFSEIFSQFFEFI--RGSELIIHNAAFDIGFMDYEFSALQQNIPKTNT 119

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                DTL++ARR  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 120 FCTVTDTLALARRLFPGKRNSLDALCDRYQIDNSKRTLHGALLDAQILAEVYLAMTGGQT 179

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236
             +F  +T+E         TV    +    +      + +ELDEH  ++  L K     I
Sbjct: 180 LFSFSDETDETDIRNM---TVRPKRVKTSSQLKIIYASCDELDEHQASLDLLEKKEGSCI 236

Query: 237 WD 238
           W 
Sbjct: 237 WR 238


>gi|322515310|ref|ZP_08068307.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus
           ureae ATCC 25976]
 gi|322118686|gb|EFX90898.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus
           ureae ATCC 25976]
          Length = 257

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/251 (35%), Positives = 139/251 (55%), Gaps = 16/251 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKP F+ +  EF +F   + AE I HNA FDV F++ E   +  
Sbjct: 60  EEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117

Query: 116 DPLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P        + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEICSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G   +  G +             +  I+  +    +  ++++EE   H++ ++ + 
Sbjct: 178 IMTGGQLAL-LGEEDASTNHENITDLGLGTITKFETSGLIVLQLSEEEQAAHEEYLKLID 236

Query: 233 K----NAIWDR 239
           K    N IW R
Sbjct: 237 KKSKGNCIWMR 247


>gi|27365234|ref|NP_760762.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
 gi|37680713|ref|NP_935322.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016]
 gi|320155618|ref|YP_004187997.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
 gi|27361381|gb|AAO10289.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus CMCP6]
 gi|37199462|dbj|BAC95293.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
 gi|319930930|gb|ADV85794.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
          Length = 243

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 93/243 (38%), Positives = 141/243 (58%), Gaps = 21/243 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R+  P+A+ 
Sbjct: 11  RIVVLDTETTGMNREGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPDAID 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118
           +HGITD+FL DKP +  +  EF +F   + AE +AHNA FDVGF++ E  +++       
Sbjct: 70  VHGITDQFLVDKPEYRQVHQEFLEFI--KGAELVAHNAPFDVGFMDYEFGKLDAAIGKTD 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGG- 186

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
            Q +  F  N      E+ + V       R      R T +EL+ H   +  + K+   +
Sbjct: 187 -QTSLEFNANSQEGGGEDIRRVAG-----RKSLKVLRATADELEAHQSRLDIVEKSGTCL 240

Query: 237 WDR 239
           W +
Sbjct: 241 WRQ 243


>gi|85714087|ref|ZP_01045076.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A]
 gi|85699213|gb|EAQ37081.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A]
          Length = 230

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 97/237 (40%), Positives = 140/237 (59%), Gaps = 9/237 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++E+G VE+ +   T +TF  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPVRGDRLVELGCVEIFNRMPTGQTFHCYINPE-RDMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +  EF +F    +A  I HNA FD+ FINAEL+R+ +  +   R++D
Sbjct: 60  SSEFLADKPLFAQVVDEFLEFIG--DAPLIIHNASFDISFINAELERLKRQVIGRERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++ G  Q     
Sbjct: 118 TLLIARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLI-GARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                R      +    +   +R  PL +R+T+ +   H   + TLG+ AIW  +++
Sbjct: 177 TETTSRQLGGTLE----LPRRQRTVPLASRVTEADRIAHRNFVATLGEKAIWTEFLA 229


>gi|149377452|ref|ZP_01895195.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893]
 gi|149358293|gb|EDM46772.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893]
          Length = 236

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 93/242 (38%), Positives = 149/242 (61%), Gaps = 14/242 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D  +  RIIEIG VEL++   T R + V++ P  R+   EA+ +HGI
Sbjct: 1   MRQIVLDTETTGIDPAEGHRIIEIGCVELMERQITGRHYHVYINPE-REVEAEAITVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRI 123
           T+EFL DKP F++I  EF++F   + AE + HNA FD+GF+++E  R+   +   +   +
Sbjct: 60  TNEFLADKPKFAAIADEFFEFI--KGAELVIHNAAFDIGFMDSEFARLKPVRRTTEHCGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +D+L+IAR+KHP  +N+L++LCKRYGI  S+R  HGALLD+ +L+DVY+ +  G + ++ 
Sbjct: 118 VDSLAIARKKHPGQKNNLDALCKRYGIDNSNRELHGALLDAEILADVYLLLTGGQTALSL 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDRY 240
               +E       ++   +     R+     R + +E + HD+ +  L K A   +WD+ 
Sbjct: 178 DAGGDEAGGEGGIRRLADD-----RNPLPVPRASDDERNAHDEFMALLAKQAGTTVWDKL 232

Query: 241 IS 242
            +
Sbjct: 233 TT 234


>gi|261868455|ref|YP_003256377.1| DNA polymerase III subunit epsilon [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413787|gb|ACX83158.1| DNA polymerase III, epsilon subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 253

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 89/249 (35%), Positives = 143/249 (57%), Gaps = 17/249 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           I+ N  R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ PN R   
Sbjct: 3   IQINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPN-RPVD 61

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P+A+K+HGITDE L DKP FS + ++F ++   + AE + HNA FDVGF++ E  ++N  
Sbjct: 62  PDAIKVHGITDEMLADKPDFSQVANQFIEYI--KGAELLIHNAPFDVGFMDYEFAKLNLP 119

Query: 117 PLDPSRII--DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  +  DTL++AR+ +P  +N+L++LC R GI  S R+ HGALLD+ +L+DVY+ M
Sbjct: 120 IKTNDICLVTDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDADILADVYLAM 179

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233
             G + +   F  +E    +   +     +++          T+EEL  H + ++ + K 
Sbjct: 180 TGGQTSL---FDESEPEIIQHAGEQQVQSTVVFSHNLRLLTPTEEELQAHLEYLKLINKK 236

Query: 234 ---NAIWDR 239
              N +W+R
Sbjct: 237 SKDNCLWER 245


>gi|253988342|ref|YP_003039698.1| DNA polymerase III subunit epsilon [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779792|emb|CAQ82953.1| putative DNA polymerase III epsilon chain [Photorhabdus
           asymbiotica]
          Length = 248

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R++V D ETTG++      +  +IIEIGAVE+++   T R F +++ P+ R   PEA ++
Sbjct: 7   RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHIYVKPD-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL+DKP F+ I  EF +F   + AE I HNA FD+GF++ E  ++N+D      
Sbjct: 66  HGISDEFLQDKPLFADIADEFIEFI--RGAELIIHNAPFDIGFMDYEFGKLNRDIPPTTD 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L +AR   P  RN+L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKVTDSLQLARALFPGKRNNLDALCDRYDIDNSQRTLHGALLDAEILADVYLIMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            + F  +   +         V  I+  +         T EEL  H+  +  +   G + +
Sbjct: 184 ALAFSME--GEVSGSANVSEVQRITRPQ-TALKVIYATGEELAAHESRLDLVEKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|126667360|ref|ZP_01738332.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
 gi|126628116|gb|EAZ98741.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
          Length = 236

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 93/244 (38%), Positives = 146/244 (59%), Gaps = 14/244 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D  +  RIIEIG VEL++ + T R + V++ P GR+   EA+ +HGI
Sbjct: 1   MRQIVLDTETTGIDPNEGHRIIEIGCVELVERTLTGRNYHVYVNP-GREVEAEAVAIHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRI 123
           T+EFL DKP F+ +  EF++F   + AE + HNA FDVGF++AE  R+   +   +   I
Sbjct: 60  TNEFLADKPLFAVVADEFFEFI--RGAELVIHNAAFDVGFMDAEFGRLDGGRKTAEHCGI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL+IAR++HP  +N+LN+LCKRYG+  S+R  HGALLD+ +L+DVY+ +  G + +  
Sbjct: 118 VDTLAIARKRHPGQKNNLNALCKRYGVDNSNRELHGALLDAEILADVYLLLTGGQTALLL 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDRY 240
              + E       ++         R+     R + +E   H + +  + K A   +W + 
Sbjct: 178 DAGSGEGAHGDGIRRV-----QAAREALQVIRASADEDLAHREFMAMMEKKAGSTVWSQV 232

Query: 241 ISSN 244
           + + 
Sbjct: 233 LGAE 236


>gi|238790133|ref|ZP_04633910.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC
           33641]
 gi|238721802|gb|EEQ13465.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC
           33641]
          Length = 259

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 87/255 (34%), Positives = 142/255 (55%), Gaps = 17/255 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   
Sbjct: 6   MQVTPTRQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYVKPD-RLVD 64

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA  +HGI+DEFL DKP+F+ I  EF +F   + AE + HNA FD+GF++ E + + +D
Sbjct: 65  PEAYGVHGISDEFLADKPTFADITPEFLEFI--RGAELVIHNAAFDIGFMDYEFRMLQQD 122

Query: 117 PLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                    I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ 
Sbjct: 123 IPKTETFCTITDSLLLARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLA 182

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-- 231
           M  G + ++F  +   D+   +  + +  I +             EEL+ H+  +  +  
Sbjct: 183 MTGGQTSLSFSME--GDQSQNDSSEDIQRI-IRPASGLKIIYAADEELEAHNSRLDLVMK 239

Query: 232 -GKNAIWDRYISSNQ 245
            G + +W   +   +
Sbjct: 240 KGGSCLWRMPLEPEE 254


>gi|107022359|ref|YP_620686.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia AU
           1054]
 gi|116689306|ref|YP_834929.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia
           HI2424]
 gi|105892548|gb|ABF75713.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647395|gb|ABK08036.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
          Length = 244

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 92/240 (38%), Positives = 136/240 (56%), Gaps = 13/240 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ +  +  DF   ++AE I HNA FD+GF++AE  R+   P       +
Sbjct: 60  TTEFLSDKPKFAEVAHQILDFV--KDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                +D            +SL   D  + T  +++EL  H   +  L K+     +W +
Sbjct: 176 VIDMLDDAGADGGAANGKRVSLAALDLAVVT-ASEDELAAHQAQLDELDKSVKGTCVWRQ 234


>gi|115522405|ref|YP_779316.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisA53]
 gi|115516352|gb|ABJ04336.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 229

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 92/236 (38%), Positives = 138/236 (58%), Gaps = 9/236 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+L+   T + +  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEILNRMPTGQIYHCYINPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL  KP F+ +  EF  F    +A  + HNA FD+GFINAEL R+++ P+   R++D
Sbjct: 60  SAEFLSTKPLFAEVAEEFLAFIA--DAPLVIHNASFDIGFINAELARLSQPPIPRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VY+ ++          
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLIGARQSQLILA 177

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
           +T  +R  +       +    +R+  L  R++  + + H   + TLG   IW+ Y+
Sbjct: 178 ETGSERASR-----AADAPRRQRETALVARVSDADREAHRAFVATLGDKPIWNEYL 228


>gi|238921062|ref|YP_002934577.1| DNA polymerase III subunit epsilon [Edwardsiella ictaluri 93-146]
 gi|238870631|gb|ACR70342.1| DNA polymerase III, epsilon subunit, putative [Edwardsiella
           ictaluri 93-146]
          Length = 243

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 90/242 (37%), Positives = 135/242 (55%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPD-RLVDPEAFTV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+D+FL DKPSF+ +  EF  F   + AE + HNA FD+GF++ E  ++ +D      
Sbjct: 66  HGISDDFLLDKPSFAEVADEFLAFI--RGAELVIHNAPFDIGFMDYEFAKLGRDLPKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G  
Sbjct: 124 FCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMTGG-- 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
           Q    F ++ D   + +   +  + +           ++ EL  H++ +   Q  G + +
Sbjct: 182 QTLLAFSSDGDGASQSQASEIRRV-VRGAKGLRVVYASEVELAAHEQRLDLVQKKGDSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|332162776|ref|YP_004299353.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606882|emb|CBY28380.1| DNA polymerase III epsilon subunit [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667006|gb|ADZ43650.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861137|emb|CBX71400.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica W22703]
          Length = 260

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 86/255 (33%), Positives = 140/255 (54%), Gaps = 17/255 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   
Sbjct: 1   MQVTPTRQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPD-RLVD 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA  +HGI+DEFL DKP+F+ I  EF +F   + AE + HNA FD+GF++ E + + +D
Sbjct: 60  PEAYGVHGISDEFLADKPTFADIAPEFIEFI--RGAELVIHNAAFDIGFMDYEFRMLQQD 117

Query: 117 PLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                    I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ 
Sbjct: 118 IPKTETFCTITDSLLLARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLA 177

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-- 231
           M  G + ++F  +   D+        +  I+             ++EL  H+  +  +  
Sbjct: 178 MTGGQTSLSFSME--GDQSQNNSSDDIQRITR-PASGLKIIYAAEDELAAHESRLDLVMK 234

Query: 232 -GKNAIWDRYISSNQ 245
            G + +W   + +  
Sbjct: 235 KGGSCLWRMPLETED 249


>gi|301168790|emb|CBW28381.1| DNA polymerase III epsilon subunit [Haemophilus influenzae 10810]
          Length = 255

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 94/257 (36%), Positives = 144/257 (56%), Gaps = 18/257 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    D   + DTL +AR+ +P  RN+L++LC+R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCERLGIDNSKRTLHGALLDAEILADVYLM 175

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTL 231
           M  G + +        +     ++KT   I             + T +EL  H + ++ +
Sbjct: 176 MTGGQTNLFDEESVESEVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMM 235

Query: 232 GK----NAIWDRYISSN 244
            K    N +WD+   +N
Sbjct: 236 NKKSGNNCLWDKRFGNN 252


>gi|119775015|ref|YP_927755.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119767515|gb|ABM00086.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 242

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 90/248 (36%), Positives = 135/248 (54%), Gaps = 20/248 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+I+ D ETTG++          RIIEIG VE+++   T RTF  ++ P G+  
Sbjct: 3   IISNAERQIILDTETTGMNQGAGAVYLGHRIIEIGCVEVVNRRLTGRTFHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
             EA+ +HGIT++ +  +P F  I   F DF   + AE +AHNA FD+ FIN E   +  
Sbjct: 62  DEEAIAVHGITNDRVAGEPRFHEIVGGFLDFI--RGAELVAHNASFDMSFINHEFSMLVP 119

Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 D   ++D+L+IA+  HP  +N+L++LCKRYGI  + R+ HGALLD+ +L+DVY+
Sbjct: 120 QGPKVEDICTVLDSLAIAKFLHPGQKNNLDALCKRYGIDNTRRTYHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G ++ N       D   +E+   +   S   R      R T +EL  H+K +  +G
Sbjct: 180 VMTGGQTKFNLH----ADEGSQEQGGIIRLDS--NRPSLKVVRATADELGNHEKRLDLVG 233

Query: 233 K--NAIWD 238
           K    +W 
Sbjct: 234 KSGKCLWR 241


>gi|256823144|ref|YP_003147107.1| DNA polymerase III subunit epsilon [Kangiella koreensis DSM 16069]
 gi|256796683|gb|ACV27339.1| DNA polymerase III, epsilon subunit [Kangiella koreensis DSM 16069]
          Length = 233

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 98/237 (41%), Positives = 142/237 (59%), Gaps = 11/237 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+     RIIEIG VEL++   T   +  +L P+ R+    A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPYDGHRIIEIGCVELVNRKFTGNHYHQYLQPD-REIDQGAMEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPLDPSR 122
           T+EFL+DKP F  +  EF +F   + AE + HNA FDVGF++ EL  +        D   
Sbjct: 60  TNEFLEDKPRFVDVVDEFLEFI--EGAELVIHNAPFDVGFLDHELSMLDSSKGKLSDYCT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+ HP  RN L++LCKRY I  SHR  HGALLDS +L+DVY++M  G + + 
Sbjct: 118 VLDTLVLARQMHPGQRNSLDALCKRYEIDNSHRELHGALLDSEILADVYLRMTGGQTSLT 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            G +   ++   E   TV  IS   R      + T++E  EH + + +L  +AIW++
Sbjct: 178 LGRQNAANQQTTET--TVRRIS-ANRQPLKVIKATEQESKEHQQKLSSLN-DAIWNQ 230


>gi|86747524|ref|YP_484020.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           HaA2]
 gi|86570552|gb|ABD05109.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           HaA2]
          Length = 231

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 95/238 (39%), Positives = 136/238 (57%), Gaps = 9/238 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T + +  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIYNRMPTGQVYHQYINPE-RDMPAEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ +   F DF    +A  + HNA FD+GFINAEL R+++  +   R++D
Sbjct: 60  SSEFLADKPVFAQVADAFIDFIG--DAPLVIHNASFDIGFINAELARLSRAAIPRERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++ G  Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLI-GARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
                    E      +    +R   L  R+T  +L+ H   I  +G  AIW+ Y ++
Sbjct: 177 A----EVPSERSGAGGDTPRRQRSIALTPRVTDADLEAHRAFIALMGDKAIWNEYTAA 230


>gi|119471754|ref|ZP_01614114.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Alteromonadales bacterium TW-7]
 gi|119445377|gb|EAW26665.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Alteromonadales bacterium TW-7]
          Length = 237

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 91/238 (38%), Positives = 141/238 (59%), Gaps = 13/238 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG+D K   RIIEIG VEL++   T   F V++ P  R    EA+ +HGIT
Sbjct: 4   RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQ-RSIEEEAIDVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSRI 123
           +EFL+DKP +  I  EF+D+   + AE + HNA FDVG ++ E   +N+      D  ++
Sbjct: 63  NEFLRDKPLYRDIAQEFFDYI--KGAELVIHNAPFDVGHMDNEFALLNQGFPNTHDYCQV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR  HP  +N+L++LC+RY I  + R+ HGALLDS +L+DVY+ M  G +++N 
Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDIDNAKRTLHGALLDSEILADVYLAMTGGQTKLN- 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238
               N+D   ++++  +  ++  +R   +  R T EE   H+  +  +   G   +W 
Sbjct: 180 -LNQNKDDGSEQQQGGIRRLN-SERAPLVVLRATDEEQSAHEARLDLVNKEGGQCLWR 235


>gi|70730658|ref|YP_260399.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf-5]
 gi|68344957|gb|AAY92563.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens Pf-5]
          Length = 249

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 98/249 (39%), Positives = 139/249 (55%), Gaps = 14/249 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 4   RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPSR 122
           +EFL  KP F+ +  EF+DF   Q A+ I HNA FDVGFIN E   + +    D      
Sbjct: 63  NEFLVGKPRFAEVADEFFDFI--QGAQLIIHNAAFDVGFINNEFALMGQHERADITQHCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++
Sbjct: 121 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLS 180

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKN----AI 236
                ++     E       I  L  D+P     + +  EL EH   ++ + K+    A+
Sbjct: 181 LAGNASDGNGSGEGAGQASEIRRLPADRPRGRIIQASDAELAEHQVRLEIIAKSAGAPAL 240

Query: 237 WDRYISSNQ 245
           W + + + Q
Sbjct: 241 WTQLLETQQ 249


>gi|167582322|ref|ZP_02375196.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           TXDOH]
 gi|167620419|ref|ZP_02389050.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis Bt4]
          Length = 241

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 92/245 (37%), Positives = 140/245 (57%), Gaps = 13/245 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIE+G VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL+DKP F+ I  +  DF   ++AE I HNA FD+GF++AE   +         + +
Sbjct: 60  TTEFLRDKPKFADIVDQLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPAFSDHCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                ++      K   P ++    D P+    T EEL +H+  +  L K+     +W +
Sbjct: 176 VIDMLDEAGDAHRKGDEPRMAFSGLDLPVLA-ATDEELADHEAQLDALDKSVKGACVWRK 234

Query: 240 YISSN 244
             + +
Sbjct: 235 EAAVD 239


>gi|165976701|ref|YP_001652294.1| DNA polymerase III epsilon chain [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876802|gb|ABY69850.1| DNA polymerase III epsilon chain [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 257

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 89/251 (35%), Positives = 140/251 (55%), Gaps = 16/251 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+D+P F+ +  EF +F   + AE I HNA FDV F++ E   +  
Sbjct: 60  EEEAIKVHGITNEFLQDRPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117

Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P    +   + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            MM GG     G +             +  I+  +    +   +++EE   H++ ++ + 
Sbjct: 178 -MMTGGQLALLGEEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236

Query: 233 K----NAIWDR 239
           K    N IW R
Sbjct: 237 KKSKGNCIWMR 247


>gi|77166266|ref|YP_344791.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani ATCC
           19707]
 gi|254435200|ref|ZP_05048707.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani AFC27]
 gi|76884580|gb|ABA59261.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani ATCC
           19707]
 gi|207088311|gb|EDZ65583.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani AFC27]
          Length = 243

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 95/245 (38%), Positives = 136/245 (55%), Gaps = 12/245 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ K   RIIEIG VEL    +T RTF  +L P  R+    ALK+HG+
Sbjct: 1   MRQIILDTETTGLEPKEGHRIIEIGGVELSCRRRTGRTFHCYLNPE-REVDKGALKIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122
           ++EFL DKP F  I  EF  F   + AE + HNA FDVGF++ EL  +           +
Sbjct: 60  SNEFLSDKPRFIEIAEEFLAFI--EGAELVIHNAPFDVGFLDHELCLLGSKWGKISTDCQ 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR++HP  +N+L++LCKRYGI  S R  HGALLD+ +L+ VY+ M  G   ++
Sbjct: 118 VLDTLQLARQRHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILAGVYLAMTGGQVSLS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
                +    F+        +S  +R      R ++EE   HD  +  +    G   +W 
Sbjct: 178 LHEYGDNGLPFRVGGGNYRPVS-AERASLTIARASREERMAHDARLTAIDKASGGACLWR 236

Query: 239 RYISS 243
           +  SS
Sbjct: 237 QLDSS 241


>gi|315497200|ref|YP_004086004.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB
           48]
 gi|315415212|gb|ADU11853.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB
           48]
          Length = 232

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 97/233 (41%), Positives = 139/233 (59%), Gaps = 8/233 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D K   R+IE+G +E+ D   T +TF  +  P  R   P+A+++HGI
Sbjct: 1   MRQIVLDTETTGIDPKKGHRLIEVGCIEIEDLLPTGKTFHHYFNPE-RLIEPDAIRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE + DKP F+ +   F DF    +A  IAHNA FD GFIN EL+R+  DP DP R +D
Sbjct: 60  TDEMVADKPKFADLAQAFIDFVG--DAPIIAHNASFDRGFINMELERLGLDPTDPDRWVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR K P   N L++LCKRY I+++ R KHGALLD+ LL+ VY+++  GG +     
Sbjct: 118 TLELARYKFPGMANSLDALCKRYNISLAERDKHGALLDARLLAGVYLEL-SGGKERGLDL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT-IQTLGKNAIW 237
           K        E+   +  ++  +R +PL + I  EE + H    ++ L    +W
Sbjct: 177 KM--HGMVSEDGTEIRVMNHGQRPRPLPSHIHPEEAEAHKAFCLKYLKDQNMW 227


>gi|284009180|emb|CBA76234.1| DNA polymerase III subunit epsilon [Arsenophonus nasoniae]
          Length = 254

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 88/243 (36%), Positives = 137/243 (56%), Gaps = 18/243 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P  R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGIHYEGHNIIEIGAVEVINRRLTGRHFHVYIKP-ARLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL+DKP+F+ I  EF DF   + AE + HNA FD+GF++ E  ++N+D      
Sbjct: 66  HGISDEFLQDKPTFAQIADEFLDFI--RGAELVIHNAPFDIGFMDYEFSKLNRDIPPTAN 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR+  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCQITDSLVLARKLFPGKRNNLDALCDRYHIDNSKRTLHGALLDAEILAEVYMAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---- 235
            + F   +  +   +  +  V  I   +          +EE+  H+  +  + K      
Sbjct: 184 SLAFSVDS--EPGSEVYRGDVKRIKR-QATGLSVVYANQEEIAAHEARLDLIEKKGGKIS 240

Query: 236 IWD 238
           +W 
Sbjct: 241 LWR 243


>gi|90421821|ref|YP_530191.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB18]
 gi|90103835|gb|ABD85872.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 231

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 97/237 (40%), Positives = 134/237 (56%), Gaps = 9/237 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  + DR++EIG VE+ +   T +TF  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGQTFHRYINPE-RDMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL  KP F+ +  EF +F  E  A  + HNA FD+GFINAEL +I + P+   R++D
Sbjct: 60  SAEFLSTKPLFAEVVDEFLEFIAE--APLVIHNASFDIGFINAELGKIARPPIPRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++ G  Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLI-GARQSQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                                +R+ PL  R+T  +   H + + TLG   IW+ Y  
Sbjct: 177 AEAAPSRSNRPGDA----PRRQRETPLAARVTDADRIAHREFVATLGDKPIWNEYFG 229


>gi|156935271|ref|YP_001439187.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533525|gb|ABU78351.1| hypothetical protein ESA_03124 [Cronobacter sakazakii ATCC BAA-894]
          Length = 243

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 134/242 (55%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFMV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119
           HGI+DEFL +KP F  +  +F D+   + AE + HNA FD+GF++ E   +N+       
Sbjct: 66  HGISDEFLMNKPVFGDVVDDFLDYI--RGAELVIHNASFDIGFMDYEFGMLNRGIPKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            I F     E    +++  T     + +  +    R   EEL  H+  +   Q  G + +
Sbjct: 184 SIAFAM---EGDGQQQQGDTGIQRVVRQASRLKVVRACDEELAAHESRLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|83720697|ref|YP_443303.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           E264]
 gi|257139540|ref|ZP_05587802.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           E264]
 gi|83654522|gb|ABC38585.1| DNA polymerase III, epsilon subunit [Burkholderia thailandensis
           E264]
          Length = 241

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 92/245 (37%), Positives = 140/245 (57%), Gaps = 13/245 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIE+G VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL+DKP F+ I  +  DF   ++AE I HNA FD+GF++AE   +         + +
Sbjct: 60  TTEFLRDKPKFADIVDQLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPAFSDHCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                ++      K   P ++    D P+    T EEL +H+  +  L K+     +W +
Sbjct: 176 VIDMLDEAGDAHRKGDEPQMAFSGLDLPVLA-ATDEELADHEAQLDALDKSVKGACVWRK 234

Query: 240 YISSN 244
             + +
Sbjct: 235 EAAVD 239


>gi|218557151|ref|YP_002390064.1| DNA polymerase III subunit epsilon [Escherichia coli S88]
 gi|218688085|ref|YP_002396297.1| DNA polymerase III subunit epsilon [Escherichia coli ED1a]
 gi|218698838|ref|YP_002406467.1| DNA polymerase III subunit epsilon [Escherichia coli IAI39]
 gi|218703464|ref|YP_002410983.1| DNA polymerase III subunit epsilon [Escherichia coli UMN026]
 gi|293403294|ref|ZP_06647385.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412]
 gi|293408304|ref|ZP_06652143.1| DNA polymerase III [Escherichia coli B354]
 gi|298378908|ref|ZP_06988789.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302]
 gi|218363920|emb|CAR01585.1| DNA polymerase III epsilon subunit [Escherichia coli S88]
 gi|218368824|emb|CAR16572.1| DNA polymerase III epsilon subunit [Escherichia coli IAI39]
 gi|218425649|emb|CAR06436.1| DNA polymerase III epsilon subunit [Escherichia coli ED1a]
 gi|218430561|emb|CAR11427.1| DNA polymerase III epsilon subunit [Escherichia coli UMN026]
 gi|221361649|emb|CAX20320.1| DNA polymerase III, epsilon subunit [Escherichia coli]
 gi|291429147|gb|EFF02167.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412]
 gi|291471482|gb|EFF13965.1| DNA polymerase III [Escherichia coli B354]
 gi|294493054|gb|ADE91810.1| DNA polymerase III, epsilon subunit [Escherichia coli IHE3034]
 gi|298280021|gb|EFI21525.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302]
 gi|323948751|gb|EGB44651.1| DNA polymerase III [Escherichia coli H252]
 gi|323958799|gb|EGB54498.1| DNA polymerase III [Escherichia coli H263]
          Length = 243

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 135/242 (55%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F     E    +++ +T     + +  K      T EEL  H+  +   Q  G + +
Sbjct: 184 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|191171395|ref|ZP_03032944.1| DNA polymerase III, epsilon subunit [Escherichia coli F11]
 gi|190908329|gb|EDV67919.1| DNA polymerase III, epsilon subunit [Escherichia coli F11]
 gi|222032040|emb|CAP74779.1| DNA polymerase III subunit epsilon [Escherichia coli LF82]
 gi|312944818|gb|ADR25645.1| DNA polymerase III subunit epsilon [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|320197298|gb|EFW71914.1| DNA polymerase III epsilon subunit [Escherichia coli WV_060327]
          Length = 243

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 135/242 (55%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNATFDIGFMDYEFSLLKRDIPKTNT 123

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F     E    +++ +T     + +  K      T EEL  H+  +   Q  G + +
Sbjct: 184 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|301050549|ref|ZP_07197422.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1]
 gi|300297757|gb|EFJ54142.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1]
          Length = 246

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 135/242 (55%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F     E    +++ +T     + +  K      T EEL  H+  +   Q  G + +
Sbjct: 187 SMTFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|294637713|ref|ZP_06715990.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685]
 gi|291089143|gb|EFE21704.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685]
          Length = 243

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 134/242 (55%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVINRRLTGRNFHVYLKPD-RLVDPEAFMV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+D+FL  +PSF+ +  EF +F   + AE + HNA FD+GF++ E  ++ +D      
Sbjct: 66  HGISDDFLLGQPSFADVVDEFLEFI--RGAELVIHNAPFDIGFMDYEFAKLGRDLPKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            ++F    +E     + +       +           ++ EL  H++ +   Q  G + +
Sbjct: 184 SLSF---ASEGDSATQVQAAELRRVVRGAQGLRVVYASEAELAAHEQRLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|28899066|ref|NP_798671.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837020|ref|ZP_01989687.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|260361704|ref|ZP_05774731.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|260876852|ref|ZP_05889207.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260897333|ref|ZP_05905829.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|260899809|ref|ZP_05908204.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|28807290|dbj|BAC60555.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749793|gb|EDM60538.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|308088283|gb|EFO37978.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308091367|gb|EFO41062.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308107229|gb|EFO44769.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308113581|gb|EFO51121.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
          Length = 240

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 96/239 (40%), Positives = 144/239 (60%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V++ P+ R+  PEA++
Sbjct: 11  RIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPEAIQ 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118
           +HGITDEFL DKP ++SI  EF DF   + AE +AHNA FD GF++ E ++++       
Sbjct: 70  VHGITDEFLVDKPEYASIHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLDPTIGKTD 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           + + F     E        +T+  I    R      R T +EL+ H K ++ +  + IW
Sbjct: 188 TSLEFNANKQEGGV-----ETIRRIE--GRKALKVLRATADELEAHQKRLELVN-DCIW 238


>gi|188534758|ref|YP_001908555.1| DNA polymerase III subunit epsilon [Erwinia tasmaniensis Et1/99]
 gi|188029800|emb|CAO97680.1| DNA polymerase III epsilon subunit [Erwinia tasmaniensis Et1/99]
          Length = 249

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 92/249 (36%), Positives = 141/249 (56%), Gaps = 17/249 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F V+L P+ R  
Sbjct: 1   MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI DEFL DKP+F+ I  +F  + N   AE + HNA FD+GF++ E  ++ +
Sbjct: 60  DPEAFGVHGIADEFLLDKPTFAQIADDFLAYIN--GAELVIHNASFDIGFMDYEFAKLQR 117

Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                    +I D+L++ARR  P  RN L++LC RY I  S R+ HGALLDS +L++V++
Sbjct: 118 GIAKTDTFCKITDSLAMARRLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231
            M  G + + F  +   +R  +++ +TV  I+          R ++EEL  H+  +  + 
Sbjct: 178 TMTGGQTSLAFSME--GERGKQQDGETVHRIAR-PSSGLRVVRASEEELFAHEARLDLVE 234

Query: 232 --GKNAIWD 238
             G + +W 
Sbjct: 235 KKGGSCLWR 243


>gi|26246159|ref|NP_752198.1| DNA polymerase III subunit epsilon [Escherichia coli CFT073]
 gi|91209283|ref|YP_539269.1| DNA polymerase III subunit epsilon [Escherichia coli UTI89]
 gi|117622497|ref|YP_851410.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1]
 gi|227884794|ref|ZP_04002599.1| DNA polymerase III subunit epsilon [Escherichia coli 83972]
 gi|237707792|ref|ZP_04538273.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA]
 gi|300900029|ref|ZP_07118226.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1]
 gi|300936085|ref|ZP_07151027.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1]
 gi|300988192|ref|ZP_07178593.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1]
 gi|331656205|ref|ZP_08357167.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206]
 gi|331681596|ref|ZP_08382232.1| DNA polymerase III, epsilon subunit [Escherichia coli H299]
 gi|26106556|gb|AAN78742.1|AE016755_242 DNA polymerase III, epsilon chain [Escherichia coli CFT073]
 gi|91070857|gb|ABE05738.1| DNA polymerase III epsilon chain [Escherichia coli UTI89]
 gi|115511621|gb|ABI99695.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1]
 gi|226899002|gb|EEH85261.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA]
 gi|227838235|gb|EEJ48701.1| DNA polymerase III subunit epsilon [Escherichia coli 83972]
 gi|300356434|gb|EFJ72304.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1]
 gi|300407506|gb|EFJ91044.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1]
 gi|300458760|gb|EFK22253.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1]
 gi|307552062|gb|ADN44837.1| DNA polymerase III, epsilon chain [Escherichia coli ABU 83972]
 gi|307628303|gb|ADN72607.1| DNA polymerase III subunit epsilon [Escherichia coli UM146]
 gi|315289701|gb|EFU49094.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 110-3]
 gi|315292140|gb|EFU51492.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 153-1]
 gi|315300178|gb|EFU59415.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 16-3]
 gi|331054453|gb|EGI26462.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206]
 gi|331081170|gb|EGI52332.1| DNA polymerase III, epsilon subunit [Escherichia coli H299]
          Length = 246

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 135/242 (55%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F     E    +++ +T     + +  K      T EEL  H+  +   Q  G + +
Sbjct: 187 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|157962223|ref|YP_001502257.1| DNA polymerase III subunit epsilon [Shewanella pealeana ATCC
           700345]
 gi|157847223|gb|ABV87722.1| DNA polymerase III, epsilon subunit [Shewanella pealeana ATCC
           700345]
          Length = 242

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 132/242 (54%), Gaps = 20/242 (8%)

Query: 8   RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+I+ D ETTG++          RIIEIG VE+++   T R +  ++ P  +    EA+ 
Sbjct: 9   RQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVVNRRLTGRHYHEYINPQ-QPIDEEAIA 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---ELQRINKDPL 118
           +HGIT+EF+ DKP F  +   F +F +   AE +AHNA FDV F++     LQ +     
Sbjct: 68  VHGITNEFVADKPKFHEVAQSFIEFID--GAEIVAHNANFDVSFMDHEFSMLQPLGPKTA 125

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  +I+D+L+IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+ M  G 
Sbjct: 126 DICQILDSLAIAKHLHPGQKNNLDALCKRYGIDNSARDLHGALLDAEILADVYLLMTGGQ 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
           ++ N   +         ++ +        R K      + +EL  H++ +  + K+   +
Sbjct: 186 TKFNLSSEKAGQEGGGIQRLSA------DRTKLKVIAASADELIRHEERLDLVAKSGQCL 239

Query: 237 WD 238
           W 
Sbjct: 240 WR 241


>gi|317402511|gb|EFV83078.1| DNA polymerase subunit III [Achromobacter xylosoxidans C54]
          Length = 240

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 92/240 (38%), Positives = 134/240 (55%), Gaps = 15/240 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTGLD  +  RI+EIG VEL++   T     ++L P+ R + PEAL +HG+
Sbjct: 1   MRQIIFDTETTGLDPAQGHRIVEIGCVELVNRMATGNNLHIYLNPD-RDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL DKP F+ +  EF  F   Q AE IAHNA FDV F NAEL +  + P+    + +
Sbjct: 60  TTEFLSDKPRFAEVADEFVKFI--QGAELIAHNAAFDVKFFNAELAKTGRGPITEYCATV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L  AR   P  RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M  G   +  
Sbjct: 118 TDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
               N+             ++          + ++ EL EH+  +  L K+     +W +
Sbjct: 178 DVDDNDTGAGGGV-----VLARFDASGLPVVKASEAELAEHETYLAALDKSVGGECVWRK 232


>gi|110640430|ref|YP_668158.1| DNA polymerase III subunit epsilon [Escherichia coli 536]
 gi|300990975|ref|ZP_07179425.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1]
 gi|306813365|ref|ZP_07447558.1| DNA polymerase III subunit epsilon [Escherichia coli NC101]
 gi|110342022|gb|ABG68259.1| DNA polymerase III, epsilon chain [Escherichia coli 536]
 gi|300305641|gb|EFJ60161.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1]
 gi|305854128|gb|EFM54567.1| DNA polymerase III subunit epsilon [Escherichia coli NC101]
 gi|324009120|gb|EGB78339.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 57-2]
 gi|324011829|gb|EGB81048.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 60-1]
          Length = 246

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 135/242 (55%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNATFDIGFMDYEFSLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F     E    +++ +T     + +  K      T EEL  H+  +   Q  G + +
Sbjct: 187 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|260576103|ref|ZP_05844096.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2]
 gi|259021583|gb|EEW24886.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2]
          Length = 231

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 92/235 (39%), Positives = 138/235 (58%), Gaps = 6/235 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  +  RI+EIGA+EL ++  T RTF  +L P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGFEPSEGHRIVEIGALELFNHLPTGRTFHKYLNPE-RSMPKEAFDVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+ KP F ++  EF +F    +A  + HNA FD+ F+NAEL   N   L   R +D
Sbjct: 60  GDDFLRGKPLFRAVAREFLEFIG--DATLVIHNASFDMKFLNAELAAANLPLLPFERALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +AR+K P S   L++LC+R+G+  S R KHGALLDS +L++VY++++ GG Q +   
Sbjct: 118 TVLMARKKFPGSPASLDALCRRFGVDNSGREKHGALLDSEILAEVYLELI-GGRQPDLVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             ++     +  +T  +     R  PL   +T+EE   H   +  LG +AIW + 
Sbjct: 177 AQHQSTKSGDTLETF-DWRPRPRSVPLPPGLTQEEAAAHTAFVARLGDDAIWLKR 230


>gi|301021445|ref|ZP_07185469.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1]
 gi|300398081|gb|EFJ81619.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1]
          Length = 246

 Score =  238 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 90/242 (37%), Positives = 135/242 (55%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++ARR  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKVTDSLAVARRMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILADVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F     E    +++ +T     + +  K      T EEL  H+  +   Q  G + +
Sbjct: 187 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|328474397|gb|EGF45202.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
          Length = 240

 Score =  238 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 96/239 (40%), Positives = 144/239 (60%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V++ P+ R+  PEA++
Sbjct: 11  RIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPEAIQ 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118
           +HGITDEFL DKP ++SI  EF DF   + AE +AHNA FD GF++ E ++++       
Sbjct: 70  VHGITDEFLVDKPEYASIHQEFLDFI--KGAELVAHNASFDTGFMDYEFEKLDPTIGKTD 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           + + F     E        +T+  I    R      R T +EL+ H K ++ +  + IW
Sbjct: 188 TSLEFNANKQEGGV-----ETIRRIE--GRKALKVLRATADELEAHQKRLELVN-DCIW 238


>gi|85707524|ref|ZP_01038599.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius sp. 217]
 gi|85667957|gb|EAQ22843.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius sp. 217]
          Length = 231

 Score =  238 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 94/235 (40%), Positives = 141/235 (60%), Gaps = 8/235 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG + +  DRI+EIGAVEL ++  T RTF  ++ P  R     A  +HG+
Sbjct: 1   MREIVLDTETTGFEPESGDRIVEIGAVELYNHMPTGRTFHKYINPQ-RAMPEAAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL++KP F+ I  EF DF    +A+ + HNA FD+ F+NAEL  +    L   + ID
Sbjct: 60  GDDFLRNKPLFAEIAQEFLDFVL--DAKLVIHNAAFDMKFLNAELGWLKLPHLPWEQAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR+K P S   L++LC+R+ I  S R+ HGALLDS +L++VY++++ GG Q +F  
Sbjct: 118 TLAIARQKFPGSPASLDALCRRFQIDNSARTLHGALLDSEILAEVYLELI-GGRQPDFAL 176

Query: 186 KTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            +       +   T P++     R  PL  R+T+ E   H   +  +G+ A+W +
Sbjct: 177 SSTSSTRSSDM--TEPDVWRPHPRPTPLAPRLTESEAAAHQAFVARMGEAALWRK 229


>gi|259909387|ref|YP_002649743.1| DNA polymerase III subunit epsilon [Erwinia pyrifoliae Ep1/96]
 gi|224965009|emb|CAX56539.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae Ep1/96]
 gi|283479460|emb|CAY75376.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae DSM 12163]
          Length = 252

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 89/249 (35%), Positives = 140/249 (56%), Gaps = 17/249 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F V+L P+ R  
Sbjct: 1   MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLI 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI DEFL DKP+F+ I  +F  + N   AE + HNA FD+GF++ E  ++ +
Sbjct: 60  DPEAFGVHGIADEFLLDKPTFAQIADDFLAYIN--GAELVIHNASFDIGFMDYEFAKLQR 117

Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                    +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLDS +L++V++
Sbjct: 118 GIAKTETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231
            M  G + + F  +   +R  ++  +T+  I+          R +++EL  H+  +  + 
Sbjct: 178 TMTGGQTSLAFSME--GEREKQQGGETIHRIAR-PSSGLRVVRASEQELMAHEARLDLVE 234

Query: 232 --GKNAIWD 238
             G + +W 
Sbjct: 235 KKGGSCLWR 243


>gi|103488315|ref|YP_617876.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis
           RB2256]
 gi|98978392|gb|ABF54543.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis
           RB2256]
          Length = 231

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 96/232 (41%), Positives = 135/232 (58%), Gaps = 6/232 (2%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTG D +N DR++EIG VEL+D  +T  TF  +  P  R     A  +HG+
Sbjct: 1   MREIIFDTETTGFDPRNGDRLVEIGCVELIDRRETGVTFHAYFNPE-RDMPAAAEAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL DKP F++   E  DFF   +A  IAHNA FD GF+NAEL+RI + PLD +R+  
Sbjct: 60  SSQFLSDKPLFAARVDELLDFFG--DAPLIAHNAAFDFGFVNAELERIGRPPLDMARMCC 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +AR+ HP +++ L++LC RYGI  SHR KHGALLD+ LL+ +YI+M  GG QI  G 
Sbjct: 118 TVQMARKLHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAHLYIEMT-GGRQIGLGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            ++                     +P     +  EL  H + +  L    +W
Sbjct: 177 ASSSAALPTASLLAARRDPARPFREPRPHMASAAELARHAEFVAGLN-QPLW 227


>gi|298293766|ref|YP_003695705.1| DNA polymerase III subunit epsilon [Starkeya novella DSM 506]
 gi|296930277|gb|ADH91086.1| DNA polymerase III, epsilon subunit [Starkeya novella DSM 506]
          Length = 232

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 102/239 (42%), Positives = 144/239 (60%), Gaps = 8/239 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+    DR++EIG VE+ +   T +TF V+L P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLNPLTGDRLVEIGCVEIFNRIPTGQTFHVYLNPE-RDMPLEAFNVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+++  +F  F        + HNA FD+GFINAEL R+ +  L   R++D
Sbjct: 60  SAEFLSDKPLFAAVVDDFLAFIA--GDPLVIHNAAFDIGFINAELARLARPALTFDRVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TLS+ARR+HP + N L+ L  RYGI  S R+KHGALLDS LL+DVY ++  GG Q   G 
Sbjct: 118 TLSLARRRHPGASNRLDDLMNRYGIDGSRRTKHGALLDSELLADVYAEL-CGGRQTALGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
              E      E+++    + L+R +PL  R+   ++  H+  + TLG +AIW  Y +  
Sbjct: 177 TVVETTVVLAERQSA---APLQRPRPLAPRLDAAQVATHEAFVATLGDSAIWKDYAAGE 232


>gi|300024773|ref|YP_003757384.1| DNA polymerase III subunit epsilon [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526594|gb|ADJ25063.1| DNA polymerase III, epsilon subunit [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 237

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 98/238 (41%), Positives = 148/238 (62%), Gaps = 5/238 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD K  DR+IEIG +E+++   T   F  F+ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGLDPKTGDRLIEIGGIEIINRIPTGVEFHRFINPE-RNVPMEAQNVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL  KP F  ++ +F  F  +     + HNA+FDV F+N EL  + + PL   R++D
Sbjct: 60  STEFLIGKPLFREVYRDFLAFIGDD--ILVIHNAQFDVNFLNHELGLVGEKPLSFDRVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++ARR+HP+  N L++LCKRYGI  S R+KHGA++DS LL++VY++++ G  Q  FG 
Sbjct: 118 TLALARRRHPAGPNSLDALCKRYGIDTSQRTKHGAIVDSLLLAEVYVELL-GERQATFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
           +T        E++     +  +R +PL +R+T+ +L  H   I+ +G  AIW+R+  +
Sbjct: 177 QTIGSGAATSERRNGKRAAAKQRPEPLPSRLTEADLVAHRSFIEKMGAKAIWNRFWGA 234


>gi|194290095|ref|YP_002006002.1| DNA polymerase III subunit epsilon [Cupriavidus taiwanensis LMG
           19424]
 gi|193223930|emb|CAQ69939.1| DNA polymerase III epsilon subunit [Cupriavidus taiwanensis LMG
           19424]
          Length = 246

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 92/238 (38%), Positives = 132/238 (55%), Gaps = 15/238 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR+IEIG VEL++   T R    ++ P  R     A+ +HGI
Sbjct: 4   MRQIVLDTETTGLNAATGDRLIEIGCVELMNRRLTGRHLHFYVNPE-RDIDEGAIAVHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ +  +  +F   Q+AE I HNA+FD+GF++ E Q +   P       +
Sbjct: 63  TVEFLADKPRFAEVVHDIREFV--QDAELIIHNAQFDLGFLDMEFQLLGLPPFRQHVGNV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  AR+  P  RN L++LC+R GI+ +HR  HGALLD+ LL++VY+ M  G  Q + 
Sbjct: 121 IDTLREARQMFPGKRNSLDALCERLGISNAHRKLHGALLDAELLAEVYLAMTRG--QDSL 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237
              T +    ++   T  ++S L        R T EE   H   ++ L    G   +W
Sbjct: 179 VIDTLDGGSGQDGVVTTADLSRLTLP---VLRATDEEQQAHLALLKGLDKASGGKTVW 233


>gi|161170263|gb|ABX59233.1| polymerase III epsilon subunit uncultured proteobacterium
           [uncultured marine bacterium EB000_55B11]
 gi|297183792|gb|ADI19915.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 230

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 147/234 (62%), Gaps = 7/234 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV+D ETTG D    DRI+EIGAVEL  +  T R +  ++ P  R   P A ++HG+
Sbjct: 1   MREIVWDTETTGFDPFAGDRIVEIGAVELNQHLPTGRVYHQYINPE-RDMPPGAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FLKD P FS+I  +F DF    +A  IAHNAKFD+ FINAEL+  N   +  ++ +D
Sbjct: 60  SIDFLKDFPVFSNIARDFIDFVG--DATLIAHNAKFDMKFINAELKNANLPQVPLNQSLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IAR+K P ++N L++LC+R+ I  S R KHGALLDS +L++VY++++ GG Q +F  
Sbjct: 118 TLEIARKKFPGAQNSLDALCRRFNIDNSSRQKHGALLDSEILAEVYLELV-GGRQPDFSL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                   +    +  + + L R K L + +T  E   H+  I++LG +A+W++
Sbjct: 177 SLVGQSKLESTSDS--SYAALSRPKKLNSLVTDVEKKAHNDFIKSLGTSAVWNK 228


>gi|53718980|ref|YP_107966.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           K96243]
 gi|53725133|ref|YP_102525.1| DNA polymerase III subunit epsilon [Burkholderia mallei ATCC 23344]
 gi|126449393|ref|YP_001080124.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10247]
 gi|167719045|ref|ZP_02402281.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei DM98]
 gi|167738046|ref|ZP_02410820.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 14]
 gi|167815230|ref|ZP_02446910.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 91]
 gi|167823638|ref|ZP_02455109.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 9]
 gi|167845182|ref|ZP_02470690.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           B7210]
 gi|167893733|ref|ZP_02481135.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 7894]
 gi|167902185|ref|ZP_02489390.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei NCTC
           13177]
 gi|167910426|ref|ZP_02497517.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 112]
 gi|167918451|ref|ZP_02505542.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           BCC215]
 gi|254188362|ref|ZP_04894873.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|52209394|emb|CAH35339.1| DNA polymerase III, epsilon chain [Burkholderia pseudomallei
           K96243]
 gi|52428556|gb|AAU49149.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
           23344]
 gi|126242263|gb|ABO05356.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC
           10247]
 gi|157936041|gb|EDO91711.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 240

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 91/240 (37%), Positives = 134/240 (55%), Gaps = 13/240 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VELL+   T +    ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGKNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ I     DF   ++AE I HNA FD+GF++AE   +         + +
Sbjct: 60  TTEFLSDKPKFAEIVDPLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPSFTDHCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                ++          P ++    D P+    T  EL  H+  +  L K+     +W +
Sbjct: 176 VIDMLDEAGDAHRNGDAPRMAFSGLDLPVLA-ATDAELAAHEAQLDALDKSAKGVCVWRK 234


>gi|251792047|ref|YP_003006767.1| DNA polymerase III subunit epsilon [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533434|gb|ACS96680.1| DNA polymerase III, epsilon subunit [Aggregatibacter aphrophilus
           NJ8700]
          Length = 254

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 94/251 (37%), Positives = 146/251 (58%), Gaps = 18/251 (7%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           I+ ++ R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R   
Sbjct: 3   IQTHQNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVD 61

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA+K+HGITDE L DKP FS I +EF ++   + AE + HNA FDVGF++ E +++N  
Sbjct: 62  PEAIKVHGITDEMLADKPDFSQIANEFIEYI--KGAELLIHNAPFDVGFMDYEFRKLNLP 119

Query: 117 PL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               D   + DTL +AR+ +P  +N+L++LC R  I  S R+ HGALLD+ +L+DVY+ M
Sbjct: 120 IKTNDICTVTDTLVMARQMYPGKKNNLDALCSRLDIDNSKRTLHGALLDAEILADVYLAM 179

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGK 233
             G + +   F  +E    ++        S +   + L     T+EEL+ H + ++ + K
Sbjct: 180 TGGQTSL---FDESEQDVIQQAVTHHQVKSAVTFSRNLRLLTPTEEELEAHLEYLKLINK 236

Query: 234 ----NAIWDRY 240
               N +WDR 
Sbjct: 237 KSKENCLWDRR 247


>gi|30061767|ref|NP_835938.1| DNA polymerase III subunit epsilon [Shigella flexneri 2a str.
           2457T]
 gi|56479626|ref|NP_706156.2| DNA polymerase III subunit epsilon [Shigella flexneri 2a str. 301]
 gi|218547665|ref|YP_002381456.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ATCC
           35469]
 gi|30040009|gb|AAP15743.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str.
           2457T]
 gi|56383177|gb|AAN41863.2| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str. 301]
 gi|218355206|emb|CAQ87813.1| DNA polymerase III epsilon subunit [Escherichia fergusonii ATCC
           35469]
 gi|313646728|gb|EFS11187.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str.
           2457T]
 gi|332754119|gb|EGJ84489.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2747-71]
 gi|332761998|gb|EGJ92270.1| DNA polymerase III, epsilon subunit [Shigella flexneri 4343-70]
 gi|332764639|gb|EGJ94869.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-671]
 gi|332768614|gb|EGJ98795.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2930-71]
 gi|333009688|gb|EGK29138.1| DNA polymerase III, epsilon subunit [Shigella flexneri VA-6]
 gi|333010755|gb|EGK30181.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-272]
 gi|333021254|gb|EGK40507.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-227]
 gi|333022178|gb|EGK41418.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-304]
          Length = 243

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +   +   ++ + T+  I + +  K      T EEL  H+  +   Q  G + +
Sbjct: 184 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|309972740|gb|ADO95941.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2846]
          Length = 255

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 93/257 (36%), Positives = 142/257 (55%), Gaps = 18/257 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTL 231
           M  G + +        +     ++KT   I             + T +EL  H + ++ +
Sbjct: 176 MTGGQTNLFDEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKMM 235

Query: 232 GK----NAIWDRYISSN 244
            K    N +W++   +N
Sbjct: 236 NKKSGNNCLWEKRFGNN 252


>gi|310766705|gb|ADP11655.1| DNA polymerase III subunit epsilon [Erwinia sp. Ejp617]
          Length = 252

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 89/249 (35%), Positives = 141/249 (56%), Gaps = 17/249 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F V+L P+ R  
Sbjct: 1   MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLI 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI DEFL DKP+F+ I  +F  + N   AE + HNA FD+GF++ E  ++ +
Sbjct: 60  DPEAFGVHGIADEFLLDKPTFAQIADDFLAYIN--GAELVIHNASFDIGFMDYEFAKLQR 117

Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                    +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLDS +L++V++
Sbjct: 118 GIAKTETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231
            M  G + + F  +   +R  +++ +T+  I+          R +++EL  H+  +  + 
Sbjct: 178 TMTGGQTSLAFSME--GEREKQQDGETIHRIAR-PSSGLRVVRASEQELMAHEARLDLVE 234

Query: 232 --GKNAIWD 238
             G + +W 
Sbjct: 235 KKGGSCLWR 243


>gi|332535809|ref|ZP_08411542.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332034787|gb|EGI71325.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 237

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 90/238 (37%), Positives = 139/238 (58%), Gaps = 13/238 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG+D K   RIIEIG VEL++   T   F V++ P  R +  EA+ +HGIT
Sbjct: 4   RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQ-RPSEEEAIDVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SRI 123
           +EFL+DKP F  I  EF+D+   + AE + HNA FDVG ++ E   +N+         ++
Sbjct: 63  NEFLRDKPLFHQIAQEFFDYI--EGAELVIHNAPFDVGHMDNEFALLNQGYPKTETFCQV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR  HP  +N+L++LC+RY +  + R+ HGALLDS +L+DVY+ M  G +++N 
Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDVDNAKRTLHGALLDSEILADVYLAMTGGQTKLN- 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238
               N+D   +++K  +  ++   R   +  R +  E   H+  +  +   G   IW 
Sbjct: 180 -LNQNKDDGSEQQKGGIKRLN-SDRAPLVVLRASDTEQSAHEARLDLVNKEGGQCIWR 235


>gi|170683943|ref|YP_001742338.1| DNA polymerase III subunit epsilon [Escherichia coli SMS-3-5]
 gi|331651120|ref|ZP_08352145.1| DNA polymerase III, epsilon subunit [Escherichia coli M718]
 gi|331671744|ref|ZP_08372540.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280]
 gi|170521661|gb|ACB19839.1| DNA polymerase III, epsilon subunit [Escherichia coli SMS-3-5]
 gi|281599565|gb|ADA72549.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2002017]
 gi|324111223|gb|EGC05206.1| DNA polymerase III [Escherichia fergusonii B253]
 gi|325496141|gb|EGC94000.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ECD227]
 gi|331050861|gb|EGI22913.1| DNA polymerase III, epsilon subunit [Escherichia coli M718]
 gi|331070733|gb|EGI42092.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280]
          Length = 246

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +   +   ++ + T+  I + +  K      T EEL  H+  +   Q  G + +
Sbjct: 187 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|254786149|ref|YP_003073578.1| DNA polymerase III subunit epsilon [Teredinibacter turnerae T7901]
 gi|237685417|gb|ACR12681.1| DNA polymerase III, epsilon subunit [Teredinibacter turnerae T7901]
          Length = 239

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 93/241 (38%), Positives = 140/241 (58%), Gaps = 13/241 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +   RIIEIG VEL +   T + F  ++ P+ R+    A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPEQGHRIIEIGCVELFNRKLTGKHFHQYIRPD-REIDEGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122
           T+EFL DKP F+ I  +F  F    +AE + HNA FDVGF++ EL+ +N+          
Sbjct: 60  TNEFLADKPVFAQIADDFLTFIG--DAELVIHNAPFDVGFLDHELRLLNRGLAPIRERCG 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL  ARRKHP  +N+L++LCKRY +  S R  HGALLD+ +L+DVY+ M  G + + 
Sbjct: 118 VLDTLVYARRKHPGQKNNLDALCKRYMVDNSQRDLHGALLDAEILADVYLAMTGGQTALA 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
            G +  +      E++ +   +   R +    R   EE++ H   + TL    G N +W 
Sbjct: 178 LGGQQGDGSGGDGEEQIIRLSA--DRPRLKVLRANDEEIEAHKAKLATLDKASGGNCLWL 235

Query: 239 R 239
           +
Sbjct: 236 Q 236


>gi|229845439|ref|ZP_04465569.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1]
 gi|229811635|gb|EEP47334.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1]
          Length = 256

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 94/258 (36%), Positives = 145/258 (56%), Gaps = 19/258 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  I  +F D+ N   AE + HNA FDVGF++ E  ++N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKEIAQDFLDYIN--GAELLIHNAPFDVGFMDYEFCKLNL 115

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175

Query: 174 MMVGGSQINFGFKTNED---RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           M  G + +    ++ E    R  +E+       ++         + T +EL  H + ++ 
Sbjct: 176 MTGGQTNLFDAEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTDDELQAHLELLKM 235

Query: 231 LGK----NAIWDRYISSN 244
           + K    N +WD+   ++
Sbjct: 236 INKKSGNNCLWDKRFGND 253


>gi|254419681|ref|ZP_05033405.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3]
 gi|196185858|gb|EDX80834.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3]
          Length = 241

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 86/235 (36%), Positives = 132/235 (56%), Gaps = 7/235 (2%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG D K  DR+IE+G +E+ D   T RTF  F+ P  R   P+A+++HGIT
Sbjct: 3   REIVLDTETTGFDPKTGDRLIEVGCIEIQDLLPTGRTFHRFVNPE-RLIPPDAIRVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +KD P F  I  +  +F    +A  IAHNA FD  FI+ E +   +     +R IDT
Sbjct: 62  DDKVKDAPKFHEIADDLIEFIG--DAPMIAHNAGFDRNFIDFEYKLCGRPITGETRWIDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +A+ + P   N L++LCKR+ +++  R+ HGAL+D+ LL++VY+++  GG +      
Sbjct: 120 LKLAQARFPGMPNSLDALCKRFKVSLVERTLHGALIDARLLAEVYLEL-RGGKERVLDL- 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-LGKNAIWDRY 240
           ++     +     VP  +   R +PL  R + EE   H   +   L   A+W+ Y
Sbjct: 178 SSAPVAGRSAGVAVPTAAYGPRPQPLALRSSPEEQAAHIAFLAKALKDRALWEAY 232


>gi|333008996|gb|EGK28455.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-218]
          Length = 243

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAVFDIGFMDYEFSLLKRDIPKTNT 123

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +   +   ++ + T+  I + +  K      T EEL  H+  +   Q  G + +
Sbjct: 184 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|110804261|ref|YP_687782.1| DNA polymerase III subunit epsilon [Shigella flexneri 5 str. 8401]
 gi|110613809|gb|ABF02476.1| DNA polymerase III, epsilon subunit [Shigella flexneri 5 str. 8401]
          Length = 246

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 136/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L +AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLVVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +   +   ++ + T+  I + +  K      T EEL  H+  +   Q  G + +
Sbjct: 187 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|323975918|gb|EGB71013.1| DNA polymerase III [Escherichia coli TW10509]
          Length = 243

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 135/242 (55%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF ++   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMNYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F     E    +++ +T     + +  K      T EEL  H+  +   Q  G + +
Sbjct: 184 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|332186931|ref|ZP_08388672.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. S17]
 gi|332012941|gb|EGI55005.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. S17]
          Length = 232

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 101/233 (43%), Positives = 140/233 (60%), Gaps = 9/233 (3%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTG   S+ DR++EIG VEL++  +T RT+  +  P  R    EA  +HG+
Sbjct: 1   MREIVFDTETTGFKFSEGDRLVEIGCVELVNRVETGRTYHAYFNPE-RSMPAEAQAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRII 124
           +D FLKDKP F+   +EF DF    +A  IAHNA FD GFIN EL  +    +   +R++
Sbjct: 60  SDAFLKDKPVFAEGVAEFLDFIG--DAPLIAHNATFDFGFINGELGALGFPHVCEKTRMV 117

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL+IAR KHP +++ L++LC RYGI  SHR  HGALLD+ LL+ VY+++M GG QI  G
Sbjct: 118 DTLAIARSKHPGAKHTLDALCSRYGIDRSHRVLHGALLDAQLLAQVYVELM-GGRQIGLG 176

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
               +D     +  TV     + R  P   R +  EL  H   ++ +  + IW
Sbjct: 177 L-LADDAGQGTQTITVTRAPAIVRP-PRVFRPSDAELAAHAAFLKGIA-DPIW 226


>gi|283834499|ref|ZP_06354240.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC
           29220]
 gi|291070049|gb|EFE08158.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC
           29220]
          Length = 245

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 138/242 (57%), Gaps = 18/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R++V D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQVVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++ +D     +
Sbjct: 69  HGIADEFLLDKPTFAEVADEFLDYI--RGAELVIHNASFDIGFMDYEFAKLKRDIPKTNE 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  + +     +++  T     + +  K      T EEL  H+  +   Q  G + +
Sbjct: 187 TMAFSMEGDS----QQQNDTGIQRIVRQSSKLRVVFATDEELAAHESRLDLVQKKGGSCL 242

Query: 237 WD 238
           W 
Sbjct: 243 WR 244


>gi|15799891|ref|NP_285903.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7
           EDL933]
 gi|15829465|ref|NP_308238.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           Sakai]
 gi|82775601|ref|YP_401948.1| DNA polymerase III subunit epsilon [Shigella dysenteriae Sd197]
 gi|168750163|ref|ZP_02775185.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757208|ref|ZP_02782215.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168763423|ref|ZP_02788430.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168776181|ref|ZP_02801188.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782940|ref|ZP_02807947.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789658|ref|ZP_02814665.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|168800383|ref|ZP_02825390.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|189403362|ref|ZP_02794985.2| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|208809432|ref|ZP_03251769.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813334|ref|ZP_03254663.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818379|ref|ZP_03258699.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400894|ref|YP_002268818.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|254791342|ref|YP_003076179.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223754|ref|ZP_05938035.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255836|ref|ZP_05948369.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281032|ref|YP_003497850.1| DNA polymerase III, epsilon subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|293413470|ref|ZP_06656119.1| DNA polymerase III [Escherichia coli B185]
 gi|309787110|ref|ZP_07681722.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617]
 gi|12512943|gb|AAG54511.1|AE005196_9 DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EDL933]
 gi|13359667|dbj|BAB33634.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|81239749|gb|ABB60459.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae Sd197]
 gi|187768434|gb|EDU32278.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015573|gb|EDU53695.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999632|gb|EDU68618.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355702|gb|EDU74121.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361034|gb|EDU79453.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366358|gb|EDU84774.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370736|gb|EDU89152.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|189377309|gb|EDU95725.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|208729233|gb|EDZ78834.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734611|gb|EDZ83298.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738502|gb|EDZ86184.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162294|gb|ACI39727.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209745474|gb|ACI71044.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|209745476|gb|ACI71045.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|209745478|gb|ACI71046.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|209745480|gb|ACI71047.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|209745482|gb|ACI71048.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|254590742|gb|ACT70103.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|290760905|gb|ADD54866.1| DNA polymerase III, epsilon subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|291433528|gb|EFF06501.1| DNA polymerase III [Escherichia coli B185]
 gi|308924688|gb|EFP70183.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617]
 gi|320190264|gb|EFW64914.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           EC1212]
 gi|320650355|gb|EFX18832.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str. H
           2687]
 gi|320665449|gb|EFX32511.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326338809|gb|EGD62628.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           1044]
 gi|326342399|gb|EGD66179.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           1125]
          Length = 243

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 134/242 (55%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F     E    +++ +      + +  K      T EEL  H+  +   Q  G + +
Sbjct: 184 SMAFAM---EGETQQQQGEATIQRLVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|293603370|ref|ZP_06685798.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292818280|gb|EFF77333.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 239

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 91/240 (37%), Positives = 133/240 (55%), Gaps = 15/240 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTGLD  +  RI+EIG VE+++   T     ++L P+ R + PEAL +HG+
Sbjct: 1   MRQIIFDTETTGLDPAQGHRIVEIGCVEMVNRMSTGNNLHIYLNPD-RDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL DKP F+ +  EF  F   Q AE IAHNA FDV F NAEL +  + P+      +
Sbjct: 60  TTEFLSDKPRFADVVDEFVKFI--QGAELIAHNAAFDVKFFNAELAKTGRGPITEYCETV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L  AR   P  RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M  G   +  
Sbjct: 118 TDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
               N+             ++       +  +   +EL EH+  +  L K+     +W +
Sbjct: 178 DVDDNDGAGSDGIV-----LAKFDASGLVVIKAADDELAEHEAYLAALDKSVGGECVWRK 232


>gi|209883542|ref|YP_002287399.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans
           OM5]
 gi|209871738|gb|ACI91534.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans
           OM5]
          Length = 230

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 99/239 (41%), Positives = 146/239 (61%), Gaps = 10/239 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD+ + DR++EIG VE+ ++  T +T+ V++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDALRGDRLVEIGCVEMFNHMPTGQTYHVYINPE-RDMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+++  EF +F    +A  I HNA FD+GFIN EL R+ +  +   R++D
Sbjct: 60  STEFLADKPLFAAVADEFLEFIG--DAPLIIHNASFDIGFINMELDRLKRAAIPCERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++ G  Q +   
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLI-GARQSSLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
              E       +  V  ++   R+ PL +RIT EE + H   + TLG + +W  +  ++
Sbjct: 177 AETE-----RTQIHVVEVTRRVREVPLASRITVEEREAHRAFVATLGDHPLWAEFKDAD 230


>gi|195938587|ref|ZP_03083969.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           EC4024]
 gi|217324145|ref|ZP_03440229.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|217320366|gb|EEC28790.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|320638235|gb|EFX07963.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           G5101]
 gi|320643619|gb|EFX12763.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str.
           493-89]
 gi|320654630|gb|EFX22631.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660198|gb|EFX27708.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 246

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 134/242 (55%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F     E    +++ +      + +  K      T EEL  H+  +   Q  G + +
Sbjct: 187 SMAFAM---EGETQQQQGEATIQRLVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|197284137|ref|YP_002150009.1| DNA polymerase III subunit epsilon [Proteus mirabilis HI4320]
 gi|194681624|emb|CAR40653.1| DNA polymerase III, epsilon subunit [Proteus mirabilis HI4320]
          Length = 252

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 94/251 (37%), Positives = 147/251 (58%), Gaps = 21/251 (8%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P  R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPE-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119
           HGI+DEFL+D PSF+ I  EF  +   + AE I HNA FD+GF++ E Q++N+D      
Sbjct: 66  HGISDEFLEDCPSFAEIADEFLAYI--RGAELIIHNASFDIGFMDYEFQKLNRDIPLTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR   P  RN+L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCQITDSLAMARELFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILADVYLAMTGGQT 183

Query: 180 QINFGF--KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKN 234
            + F    ++NE++   + ++ V  +  L+       + + EEL  H+  +  +   G +
Sbjct: 184 ALAFSMEGESNEEQKGDDIQRIVRPVRGLR-----VIKASAEELVAHEARLDLVVKKGGH 238

Query: 235 AIWDRYISSNQ 245
            +W    +SN 
Sbjct: 239 CLWRPAPASND 249


>gi|114798147|ref|YP_758739.1| DNA polymerase III subunit epsilon [Hyphomonas neptunium ATCC
           15444]
 gi|114738321|gb|ABI76446.1| DNA polymerase III, epsilon subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 232

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/239 (37%), Positives = 142/239 (59%), Gaps = 13/239 (5%)

Query: 3   RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              ++R+I FD ETTGL+  + DRIIEIGAVE++++  T +TF+  + P G   S   ++
Sbjct: 1   MTERVREIAFDTETTGLNPNEGDRIIEIGAVEMINHIPTGKTFRRLINP-GMAVSEATIR 59

Query: 62  LHGITDEFLKDKPSFS--SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + GITD+ L+DKP F    I   F +F    +A  +AHNA FD GF+N ELQR  +D + 
Sbjct: 60  ITGITDDHLRDKPPFEHPDIIDAFLEF--TGDAIIVAHNASFDRGFLNMELQRCGRDIIP 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             R +DT+ +AR+++P +   L++LCKR+ I++  R+ HGALLDS LL+ VY++++ GG 
Sbjct: 118 EDRWVDTVQMARKRYPGAPASLDALCKRFDISLESRTFHGALLDSQLLASVYLELL-GGR 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
              F F+           +     +  +R  PL + +T  E   H + ++ LG +A+W 
Sbjct: 177 ARAFSFEPTL------GGEGYQRPAARQRPAPLASLVTDAERAAHAELVEKLGADALWK 229


>gi|27479696|gb|AAO17223.1| DnaQ [Photorhabdus luminescens]
          Length = 248

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 91/249 (36%), Positives = 142/249 (57%), Gaps = 19/249 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R++V D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA ++
Sbjct: 7   RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYIQPD-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL+DKP F+ +  EF +F   + AE I HNA FD+GFI+ E  ++++D      
Sbjct: 66  HGISDEFLQDKPLFADVADEFVEFI--RGAELIIHNAPFDIGFIDYEFGKLDRDIPPTAD 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR   P  RN+L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKITDSLQLARGLFPGKRNNLDALCDRYDIDNSKRTLHGALLDAEILADVYLIMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            + F  +   +         +  ++  +    +    T EEL  H+  +  +   G + +
Sbjct: 184 SLAFSME--GEIAGGANVSEIQRVTRSQTALKVVY-ATDEELAAHESRLDLVEKKGGSCL 240

Query: 237 WDRYISSNQ 245
           W   ISS Q
Sbjct: 241 WR--ISSEQ 247


>gi|331661586|ref|ZP_08362509.1| DNA polymerase III, epsilon subunit [Escherichia coli TA143]
 gi|284919985|emb|CBG33040.1| DNA polymerase III epsilon subunit [Escherichia coli 042]
 gi|331060008|gb|EGI31972.1| DNA polymerase III, epsilon subunit [Escherichia coli TA143]
          Length = 246

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 136/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P  R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPE-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF ++   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMNYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +   +   ++ + T+  I + +  K      T EEL  H+  +   Q  G + +
Sbjct: 187 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|281177435|dbj|BAI53765.1| DNA polymerase III epsilon subunit [Escherichia coli SE15]
 gi|330910061|gb|EGH38571.1| DNA polymerase 3 epsilon subunit [Escherichia coli AA86]
          Length = 243

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 134/242 (55%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F     E    +++ +T     + +  K      T EEL  H+  +   Q  G   +
Sbjct: 184 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGTCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|238784821|ref|ZP_04628822.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970]
 gi|238714237|gb|EEQ06248.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970]
          Length = 259

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/248 (36%), Positives = 138/248 (55%), Gaps = 17/248 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 12  RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL DKP+F+ I  EF +F   + AE I HNA FD+GF++ E + + +D      
Sbjct: 71  HGISDEFLADKPTFADIAPEFLEFI--RGAELIIHNAAFDIGFMDHEFRMLQQDIPKTET 128

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +LS+VY+ M  G +
Sbjct: 129 FCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILSEVYLAMTGGQT 188

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            + F  +   D+   +    +  I+             ++EL  H+  +  +   G + +
Sbjct: 189 SLTFSME--GDQSQNDSSDDIQRITR-PASGLKIIYAAEDELAAHESRLDLVMKKGGSCL 245

Query: 237 WDRYISSN 244
           W   + S 
Sbjct: 246 WRMPLESE 253


>gi|188494951|ref|ZP_03002221.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638]
 gi|194438247|ref|ZP_03070339.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1]
 gi|254160329|ref|YP_003043437.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606]
 gi|312970313|ref|ZP_07784494.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70]
 gi|188490150|gb|EDU65253.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638]
 gi|194422911|gb|EDX38906.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1]
 gi|242376045|emb|CAQ30730.1| DNA polymerase III, epsilon subunit, subunit of DNA polymerase III,
           core enzyme and DNA polymerase III, holoenzyme
           [Escherichia coli BL21(DE3)]
 gi|253972230|gb|ACT37901.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606]
 gi|253976439|gb|ACT42109.1| DNA polymerase III subunit epsilon [Escherichia coli BL21(DE3)]
 gi|309700417|emb|CBI99706.1| DNA polymerase III epsilon subunit [Escherichia coli ETEC H10407]
 gi|310336962|gb|EFQ02100.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70]
          Length = 243

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +   +   ++ + T+  I + +  K      T +EL  H+  +   Q  G + +
Sbjct: 184 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDDELAAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|120599049|ref|YP_963623.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1]
 gi|146292880|ref|YP_001183304.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32]
 gi|120559142|gb|ABM25069.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1]
 gi|145564570|gb|ABP75505.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32]
 gi|319426198|gb|ADV54272.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200]
          Length = 242

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/248 (36%), Positives = 134/248 (54%), Gaps = 20/248 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+IV D ETTG++          RIIEIG VE+++   T R F  ++ P G+  
Sbjct: 3   IISNASRQIVLDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
            PEA+ +HGITDE + ++P F  I  +F +F +   AE +AHNA FDV F++ E   +  
Sbjct: 62  DPEAIAVHGITDERVANEPRFHQIAQQFIEFID--GAEIVAHNANFDVSFMDHEFSMLPS 119

Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                +D   I+DTL IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+
Sbjct: 120 KGPKTMDICDILDTLEIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G ++ N   +          ++  PN   LK         + +EL  H++ +  + 
Sbjct: 180 IMTGGQTKFNLSNEEVGQEAGG-IQRFAPNSLNLK-----VISASADELAMHEQRLDLVA 233

Query: 233 K--NAIWD 238
           K    +W 
Sbjct: 234 KSGKCLWR 241


>gi|296444995|ref|ZP_06886956.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium
           OB3b]
 gi|296257416|gb|EFH04482.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium
           OB3b]
          Length = 242

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 102/239 (42%), Positives = 147/239 (61%), Gaps = 9/239 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD  K  RI+EIGAVE+ +   T RTF  +L P  R    EA ++HG+
Sbjct: 1   MREIVFDTETTGLDPAKGHRIVEIGAVEISNLIPTGRTFHFYLDPE-RDMPEEAFRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  FL  +  F  I   F +F    +A+ +AHNA+FD+ F+NAEL  +  + +   R++D
Sbjct: 60  STAFLTGQKKFREIAEAFLEFVA--DAQLVAHNAEFDMRFVNAELAMLGLEAIAADRVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IARR HP + N L++LC+RYG+  S R KHGALLDS+LL++VY ++M GG Q     
Sbjct: 118 TLTIARRLHPGAANSLDALCQRYGVDSSRRDKHGALLDSYLLAEVYAELM-GGRQSALVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
           +T+     ++    +    L  R  PL  R+ +EE+  H++   TLGK  IW RY++  
Sbjct: 177 QTSVAAAAQDLGADL----LRSRPAPLAPRLAEEEIAAHERFAATLGKAPIWSRYLTPE 231


>gi|134095496|ref|YP_001100571.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans]
 gi|133739399|emb|CAL62449.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans]
          Length = 234

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/239 (40%), Positives = 135/239 (56%), Gaps = 16/239 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +  DRIIEIG VEL+D   T   F  ++ P  R +   AL +HG+
Sbjct: 1   MRQIVLDTETTGLNPRSGDRIIEIGCVELIDRRLTGNNFHHYINPE-RDSEEGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ I  EF D+ +   AE + HNA FDVGF++AEL+R+           I
Sbjct: 60  TTEFLSDKPKFAEIVDEFRDYIS--GAEVVIHNAPFDVGFLDAELKRVEMPLFKDHVGGI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL  A+  HP  RN L++LC RYG++ +HR+ HGALLD+ LL++VY+ M  G + ++ 
Sbjct: 118 LDTLQQAKELHPGKRNSLDALCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLSM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                +        + V    +      L    T EEL EH+  +Q+L K      +W 
Sbjct: 178 DLGGQDADSDGIALEVVAIADI------LLQPATAEELAEHELLMQSLDKEVKGQCLWR 230


>gi|331645384|ref|ZP_08346488.1| DNA polymerase III, epsilon subunit [Escherichia coli M605]
 gi|331045546|gb|EGI17672.1| DNA polymerase III, epsilon subunit [Escherichia coli M605]
          Length = 246

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 134/242 (55%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F     E    +++ +T     + +  K      T EEL  H+  +   Q  G   +
Sbjct: 187 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGTCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|238759160|ref|ZP_04620328.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236]
 gi|238702576|gb|EEP95125.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236]
          Length = 259

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 89/255 (34%), Positives = 142/255 (55%), Gaps = 17/255 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   
Sbjct: 6   MQVTPTRQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVD 64

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA  +HGI+DEFL DKPSF+ I  EF +F   + AE + HNA FD+GF++ E + + +D
Sbjct: 65  PEAYGVHGISDEFLADKPSFADITPEFLEFI--RGAELVIHNAAFDIGFMDYEFRMLQQD 122

Query: 117 PLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                    I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ 
Sbjct: 123 IPKTETFCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLA 182

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-- 231
           M  G + ++F  +   D+   +  + +  I+             ++EL  H+  +  +  
Sbjct: 183 MTGGQTSLSFSME--GDQSQNDSSEDIQRITR-PASALKIIYAAEDELLAHESRLDLVMK 239

Query: 232 -GKNAIWDRYISSNQ 245
            G + +W   + S  
Sbjct: 240 KGGSCLWRMPLESED 254


>gi|74310830|ref|YP_309249.1| DNA polymerase III subunit epsilon [Shigella sonnei Ss046]
 gi|82542808|ref|YP_406755.1| DNA polymerase III subunit epsilon [Shigella boydii Sb227]
 gi|157156660|ref|YP_001461381.1| DNA polymerase III subunit epsilon [Escherichia coli E24377A]
 gi|157159676|ref|YP_001456994.1| DNA polymerase III subunit epsilon [Escherichia coli HS]
 gi|187734104|ref|YP_001879012.1| DNA polymerase III subunit epsilon [Shigella boydii CDC 3083-94]
 gi|191167032|ref|ZP_03028854.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A]
 gi|193067693|ref|ZP_03048660.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019]
 gi|194427534|ref|ZP_03060082.1| DNA polymerase III, epsilon subunit [Escherichia coli B171]
 gi|194432694|ref|ZP_03064979.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012]
 gi|209917402|ref|YP_002291486.1| DNA polymerase III subunit epsilon [Escherichia coli SE11]
 gi|218552790|ref|YP_002385703.1| DNA polymerase III subunit epsilon [Escherichia coli IAI1]
 gi|218693677|ref|YP_002401344.1| DNA polymerase III subunit epsilon [Escherichia coli 55989]
 gi|260842441|ref|YP_003220219.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2
           str. 12009]
 gi|260853420|ref|YP_003227311.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O26:H11
           str. 11368]
 gi|260866358|ref|YP_003232760.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O111:H-
           str. 11128]
 gi|293418309|ref|ZP_06660744.1| DNA polymerase III [Escherichia coli B088]
 gi|332281343|ref|ZP_08393756.1| DNA polymerase III epsilon subunit [Shigella sp. D9]
 gi|73854307|gb|AAZ87014.1| DNA polymerase III epsilon subunit [Shigella sonnei Ss046]
 gi|81244219|gb|ABB64927.1| DNA polymerase III epsilon subunit [Shigella boydii Sb227]
 gi|157065356|gb|ABV04611.1| DNA polymerase III, epsilon subunit [Escherichia coli HS]
 gi|157078690|gb|ABV18398.1| DNA polymerase III, epsilon subunit [Escherichia coli E24377A]
 gi|187431096|gb|ACD10370.1| DNA polymerase III, epsilon subunit [Shigella boydii CDC 3083-94]
 gi|190902925|gb|EDV62652.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A]
 gi|192959105|gb|EDV89541.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019]
 gi|194414304|gb|EDX30578.1| DNA polymerase III, epsilon subunit [Escherichia coli B171]
 gi|194418956|gb|EDX35040.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012]
 gi|209910661|dbj|BAG75735.1| DNA polymerase III epsilon subunit [Escherichia coli SE11]
 gi|218350409|emb|CAU96094.1| DNA polymerase III epsilon subunit [Escherichia coli 55989]
 gi|218359558|emb|CAQ97098.1| DNA polymerase III epsilon subunit [Escherichia coli IAI1]
 gi|257752069|dbj|BAI23571.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O26:H11
           str. 11368]
 gi|257757588|dbj|BAI29085.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2
           str. 12009]
 gi|257762714|dbj|BAI34209.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O111:H-
           str. 11128]
 gi|291324837|gb|EFE64252.1| DNA polymerase III [Escherichia coli B088]
 gi|320186397|gb|EFW61129.1| DNA polymerase III epsilon subunit [Shigella flexneri CDC 796-83]
 gi|320201190|gb|EFW75773.1| DNA polymerase III epsilon subunit [Escherichia coli EC4100B]
 gi|323160256|gb|EFZ46213.1| DNA polymerase III, epsilon subunit [Escherichia coli E128010]
 gi|323165914|gb|EFZ51696.1| DNA polymerase III, epsilon subunit [Shigella sonnei 53G]
 gi|323171002|gb|EFZ56651.1| DNA polymerase III, epsilon subunit [Escherichia coli LT-68]
 gi|323176527|gb|EFZ62119.1| DNA polymerase III, epsilon subunit [Escherichia coli 1180]
 gi|323181627|gb|EFZ67042.1| DNA polymerase III, epsilon subunit [Escherichia coli 1357]
 gi|324115459|gb|EGC09401.1| DNA polymerase III [Escherichia coli E1167]
 gi|332093741|gb|EGI98796.1| DNA polymerase III, epsilon subunit [Shigella boydii 3594-74]
 gi|332095033|gb|EGJ00068.1| DNA polymerase III, epsilon subunit [Shigella boydii 5216-82]
 gi|332097572|gb|EGJ02551.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 155-74]
 gi|332103695|gb|EGJ07041.1| DNA polymerase III epsilon subunit [Shigella sp. D9]
          Length = 243

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            + F  +   +   ++ + T+  I + +  K      T EEL  H+  +  +   G + +
Sbjct: 184 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVEKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|238794443|ref|ZP_04638053.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909]
 gi|238726238|gb|EEQ17782.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909]
          Length = 259

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 89/255 (34%), Positives = 143/255 (56%), Gaps = 17/255 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   
Sbjct: 6   MQVTPTRQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVD 64

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA  +HGI+DEFL DKP+F+ I  EF DF   + AE + HNA FD+GF++ E + + +D
Sbjct: 65  PEAYGVHGISDEFLADKPTFADITPEFLDFI--RGAELVIHNAAFDIGFMDYEFRMLQQD 122

Query: 117 PLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                    I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ 
Sbjct: 123 IPKTETFCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLA 182

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-- 231
           M  G + ++F  +   D+   +  + +  I+     +       ++EL  H+  +  +  
Sbjct: 183 MTGGQTSLSFSME--GDQSQNDSSEDIQRITR-PASELKIIYAAEDELLAHESRLDLVMK 239

Query: 232 -GKNAIWDRYISSNQ 245
            G + +W   + S  
Sbjct: 240 KGGSCLWRMPLESED 254


>gi|193063208|ref|ZP_03044299.1| DNA polymerase III, epsilon subunit [Escherichia coli E22]
 gi|256020181|ref|ZP_05434046.1| DNA polymerase III subunit epsilon [Shigella sp. D9]
 gi|300819828|ref|ZP_07100014.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1]
 gi|300823399|ref|ZP_07103529.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7]
 gi|300926565|ref|ZP_07142351.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1]
 gi|301326098|ref|ZP_07219494.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1]
 gi|307314695|ref|ZP_07594293.1| DNA polymerase III, epsilon subunit [Escherichia coli W]
 gi|309797929|ref|ZP_07692309.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7]
 gi|331666456|ref|ZP_08367336.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271]
 gi|331675873|ref|ZP_08376590.1| DNA polymerase III, epsilon subunit [Escherichia coli H591]
 gi|192931116|gb|EDV83719.1| DNA polymerase III, epsilon subunit [Escherichia coli E22]
 gi|300417423|gb|EFK00734.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1]
 gi|300524017|gb|EFK45086.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7]
 gi|300527586|gb|EFK48648.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1]
 gi|300847158|gb|EFK74918.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1]
 gi|306905814|gb|EFN36339.1| DNA polymerase III, epsilon subunit [Escherichia coli W]
 gi|308118469|gb|EFO55731.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7]
 gi|315059428|gb|ADT73755.1| DNA polymerase III, epsilon subunit [Escherichia coli W]
 gi|320173695|gb|EFW48884.1| DNA polymerase III epsilon subunit [Shigella dysenteriae CDC
           74-1112]
 gi|320179852|gb|EFW54798.1| DNA polymerase III epsilon subunit [Shigella boydii ATCC 9905]
 gi|323380013|gb|ADX52281.1| DNA polymerase III, epsilon subunit [Escherichia coli KO11]
 gi|323945583|gb|EGB41633.1| DNA polymerase III [Escherichia coli H120]
 gi|324020673|gb|EGB89892.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 117-3]
 gi|331066301|gb|EGI38179.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271]
 gi|331076433|gb|EGI47710.1| DNA polymerase III, epsilon subunit [Escherichia coli H591]
          Length = 246

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            + F  +   +   ++ + T+  I + +  K      T EEL  H+  +  +   G + +
Sbjct: 187 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVEKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|170021437|ref|YP_001726391.1| DNA polymerase III subunit epsilon [Escherichia coli ATCC 8739]
 gi|253774763|ref|YP_003037594.1| DNA polymerase III subunit epsilon [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|297518674|ref|ZP_06937060.1| DNA polymerase III subunit epsilon [Escherichia coli OP50]
 gi|300905642|ref|ZP_07123388.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1]
 gi|300919145|ref|ZP_07135678.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1]
 gi|300927906|ref|ZP_07143466.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1]
 gi|301305771|ref|ZP_07211857.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1]
 gi|169756365|gb|ACA79064.1| DNA polymerase III, epsilon subunit [Escherichia coli ATCC 8739]
 gi|253325807|gb|ACT30409.1| DNA polymerase III, epsilon subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|300402534|gb|EFJ86072.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1]
 gi|300413743|gb|EFJ97053.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1]
 gi|300464061|gb|EFK27554.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1]
 gi|300838946|gb|EFK66706.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1]
 gi|315253528|gb|EFU33496.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 85-1]
 gi|323963578|gb|EGB59135.1| DNA polymerase III [Escherichia coli H489]
 gi|323972507|gb|EGB67713.1| DNA polymerase III [Escherichia coli TA007]
          Length = 246

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +   +   ++ + T+  I + +  K      T +EL  H+  +   Q  G + +
Sbjct: 187 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDDELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|311103923|ref|YP_003976776.1| DNA polymerase III subunit epsilon [Achromobacter xylosoxidans A8]
 gi|310758612|gb|ADP14061.1| DNA polymerase III, epsilon subunit [Achromobacter xylosoxidans A8]
          Length = 240

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/241 (37%), Positives = 130/241 (53%), Gaps = 15/241 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTGLD  +  RI+EIG VE+++   T     ++L P+ R + PEAL +HG+
Sbjct: 1   MRQIIFDTETTGLDPAQGHRIVEIGCVEMVNRMSTGNNLHIYLNPD-RDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL DKP F+ +  EF  F   Q AE IAHNA FDV F NAEL +  + P+      +
Sbjct: 60  TTEFLSDKPRFADVADEFVKFI--QGAELIAHNAAFDVKFFNAELAKTGRGPVTDYCETV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L  AR   P  RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M  G   +  
Sbjct: 118 TDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                              ++          + ++ EL EH+  +  L K+      W +
Sbjct: 178 DVDD-----GASAGGNGVELARFDASGLPVIKASEAELAEHETYLAALDKSVGGECTWRK 232

Query: 240 Y 240
            
Sbjct: 233 I 233


>gi|85375423|ref|YP_459485.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis
           HTCC2594]
 gi|84788506|gb|ABC64688.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis
           HTCC2594]
          Length = 229

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/233 (39%), Positives = 133/233 (57%), Gaps = 6/233 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD K  DR++EIG VEL++   T  TF  +  P  R   P A ++HG+
Sbjct: 1   MREIVFDTETTGLDPKTGDRMVEIGCVELMNRVPTGETFHAYYNPE-RDMPPAAEEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  FL DKP F        +F    +A  +AHNA FD GF+N EL+ I ++ +   R++D
Sbjct: 60  SAAFLSDKPLFRDTADALLEFLG--DAPLVAHNAGFDFGFLNTELELIEREAISLDRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ IAR+KHP ++  L++LC RYG+  SHR KHGALLD+ LL+ VY++++ GG QI  G 
Sbjct: 118 TVQIARKKHPGAKVSLDALCSRYGVDRSHRVKHGALLDAELLAQVYVELL-GGRQIGLGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
                     E    P         P     + EEL  H   ++ + ++ +W+
Sbjct: 177 DPEAADTDPSEAAWKPETVARAFRTPRPHAASAEELARHKVFLEGI-ESPLWN 228


>gi|170732605|ref|YP_001764552.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|169815847|gb|ACA90430.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 244

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/240 (37%), Positives = 134/240 (55%), Gaps = 13/240 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DR+IEIG VELL+   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ +  +  DF   ++AE I HNA FD+GF++AE  R+   P       +
Sbjct: 60  TTEFLSDKPKFAEVAHQILDFV--KDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                +D            +SL   D       +++EL  H   +  L K+     +W +
Sbjct: 176 VIDMLDDAGADGSAANGKRVSLAALDL-AVVAASEDELAAHQAQLDELDKSVKGTCVWRQ 234


>gi|16128202|ref|NP_414751.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. MG1655]
 gi|89107090|ref|AP_000870.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. W3110]
 gi|170079846|ref|YP_001729166.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|238899608|ref|YP_002925404.1| DNA polymerase III epsilon subunit [Escherichia coli BW2952]
 gi|256024146|ref|ZP_05438011.1| DNA polymerase III subunit epsilon [Escherichia sp. 4_1_40B]
 gi|118805|sp|P03007|DPO3E_ECOLI RecName: Full=DNA polymerase III subunit epsilon
 gi|42063|emb|CAA27661.1| unnamed protein product [Escherichia coli]
 gi|147679|gb|AAA24564.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|1786409|gb|AAC73320.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. MG1655]
 gi|4902952|dbj|BAA77886.1| DNA polymerase III epsilon subunit [Escherichia coli str. K12
           substr. W3110]
 gi|169887681|gb|ACB01388.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|238860830|gb|ACR62828.1| DNA polymerase III epsilon subunit [Escherichia coli BW2952]
 gi|315134900|dbj|BAJ42059.1| DNA polymerase III subunit epsilon [Escherichia coli DH1]
 gi|315616887|gb|EFU97504.1| DNA polymerase III, epsilon subunit [Escherichia coli 3431]
 gi|323943406|gb|EGB39558.1| DNA polymerase III [Escherichia coli E482]
 gi|332341543|gb|AEE54877.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli UMNK88]
          Length = 243

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +   +   ++ + T+  I + +  K      T EE+  H+  +   Q  G + +
Sbjct: 184 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEEIAAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|327254934|gb|EGE66544.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_7v]
          Length = 243

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF ++   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMNYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +   +   ++ + T+  I + +  K      T EEL  H+  +   Q  G + +
Sbjct: 184 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|283783999|ref|YP_003363864.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168]
 gi|282947453|emb|CBG87000.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168]
          Length = 243

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 85/242 (35%), Positives = 141/242 (58%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F ++L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHIYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++N+D      
Sbjct: 66  HGIADEFLLDKPTFADVADEFLDYI--RGAELVIHNASFDIGFMDYEFSKLNRDIPKTSS 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            + F  +   +   ++ ++T+  + + +  K      + EE+  H+  +  +   G + +
Sbjct: 184 SMTFAME--GETQQQQGEETIQRL-VRQARKLRVVFASDEEVAAHEARLDLVEKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|152986464|ref|YP_001348839.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PA7]
 gi|150961622|gb|ABR83647.1| DNA polymerase III, epsilon subunit [Pseudomonas aeruginosa PA7]
          Length = 246

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/242 (37%), Positives = 133/242 (54%), Gaps = 12/242 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+      RIIEIG VEL     T R F V+L P+ R+    A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121
           T+E+LKDKP F  + ++F++F   + A+ I HNA FD+GFIN E   + +    D  +  
Sbjct: 60  TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR +HP  RN+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M  G + +
Sbjct: 118 TVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237
           +      E         +        R      R + EEL  H   +  + K+A    +W
Sbjct: 178 SLAGSGAEGDGSGRPMVSPIRRLDPARVATPVLRASAEELAAHAARLAVIEKSAGGPSLW 237

Query: 238 DR 239
            +
Sbjct: 238 AQ 239


>gi|300949353|ref|ZP_07163365.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1]
 gi|300958303|ref|ZP_07170446.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1]
 gi|301029642|ref|ZP_07192704.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1]
 gi|301645470|ref|ZP_07245407.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1]
 gi|307136810|ref|ZP_07496166.1| DNA polymerase III subunit epsilon [Escherichia coli H736]
 gi|331640665|ref|ZP_08341812.1| DNA polymerase III, epsilon subunit [Escherichia coli H736]
 gi|1552785|gb|AAB08637.1| DNA polymerase III epsilon chain [Escherichia coli]
 gi|260450588|gb|ACX41010.1| DNA polymerase III, epsilon subunit [Escherichia coli DH1]
 gi|299877469|gb|EFI85680.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1]
 gi|300315009|gb|EFJ64793.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1]
 gi|300451236|gb|EFK14856.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1]
 gi|301076259|gb|EFK91065.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1]
 gi|331040039|gb|EGI12247.1| DNA polymerase III, epsilon subunit [Escherichia coli H736]
          Length = 246

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +   +   ++ + T+  I + +  K      T EE+  H+  +   Q  G + +
Sbjct: 187 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEEIAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|332288192|ref|YP_004419044.1| DNA polymerase III subunit epsilon [Gallibacterium anatis UMN179]
 gi|330431088|gb|AEC16147.1| DNA polymerase III subunit epsilon [Gallibacterium anatis UMN179]
          Length = 248

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 85/252 (33%), Positives = 137/252 (54%), Gaps = 16/252 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++ ++ R +V D ETTG+          RIIEIGAVEL++   T R F V+L P+ ++  
Sbjct: 1   MQMDENRIVVLDTETTGMSGTSEPQIGHRIIEIGAVELVNRRYTGRNFHVYLQPD-QQVD 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA+ +HGITDEFL DKP F  +  EF +F   + AE + HNA FDV F+N E     + 
Sbjct: 60  PEAVAVHGITDEFLADKPRFKEVAQEFINFI--KGAELVIHNAPFDVAFMNQEFALQGQA 117

Query: 117 PLDP--SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  ++ D+L +AR+ +P  +N L++LC R GI  S R+ HGALLD+ +L+DVY+ M
Sbjct: 118 LTTDQLCKVTDSLKVARQLYPGKKNSLDALCSRLGIDNSKRTLHGALLDAEILADVYLAM 177

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
             G   +    +       +E ++ + + +  +  K    + + EE+  H + +  + K 
Sbjct: 178 TGGQGSLQLDTEPAVAVQQQEVQQQIQHSNTPR--KLFVLKPSAEEIQAHQEYLSLINKK 235

Query: 235 ----AIWDRYIS 242
                +W + + 
Sbjct: 236 SGDQCLWQQKLE 247


>gi|148546962|ref|YP_001267064.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1]
 gi|148511020|gb|ABQ77880.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1]
          Length = 252

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/246 (36%), Positives = 131/246 (53%), Gaps = 12/246 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+   +  RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
           + +HGITD FL  KP F  +  EF+ F   Q A  + HNA FDVGFIN E   + +    
Sbjct: 60  INVHGITDAFLVGKPRFGDVAEEFFQFI--QGATLVIHNAAFDVGFINNEFALLGQQDRA 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D      I+DTL +AR +HP  RN L++LCKRY I  S R  HGALLDS LL+DVY+ M 
Sbjct: 118 DISQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            G + ++      +     +         ++ R        + EEL+ H + +  + K+A
Sbjct: 178 GGQTSLSLAGNGADAEEDGQGAGGSEIRRIVGRAPGRVIMASAEELEAHAERLAAIAKSA 237

Query: 236 ----IW 237
               +W
Sbjct: 238 GGPSLW 243


>gi|319898105|ref|YP_004136302.1| DNA polymerase iii epsilon subunit [Haemophilus influenzae F3031]
 gi|317433611|emb|CBY81995.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3031]
          Length = 256

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 93/258 (36%), Positives = 145/258 (56%), Gaps = 19/258 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175

Query: 174 MMVGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           M  G + +       ++   R  +E+       ++         + T +EL  H + ++ 
Sbjct: 176 MTGGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKM 235

Query: 231 LGK----NAIWDRYISSN 244
           + K    N +WD+   +N
Sbjct: 236 MNKKSGNNCLWDKRFGNN 253


>gi|83313644|ref|YP_423908.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
 gi|82948485|dbj|BAE53349.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
          Length = 257

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 90/235 (38%), Positives = 135/235 (57%), Gaps = 6/235 (2%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            MR+IV D ETTG D     R++EIG VEL ++  T   F  +  P  R    EA K+HG
Sbjct: 27  PMREIVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGSVFHRYCNPE-RDMPEEAFKVHG 85

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ++ +FL DKP F+ I ++F +F    +   + HNA+FD+ FINAEL R+   PL  SR I
Sbjct: 86  LSADFLSDKPLFAEIVADFLEFIG--DVPLVIHNAEFDMRFINAELTRLGFPPLPMSRSI 143

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DT+ +AR++ P ++ +L++LC+R+ I  +HR+KHGALLDS LL++VY++++ GG Q    
Sbjct: 144 DTVMMARKRFPGAQANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQLI-GGRQPGLE 202

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
               +            +    +  +P     T+EE   H   +  L KNA+W R
Sbjct: 203 LGGGKGNGAGGTANASTHQVTREFREPRPHGPTEEETAAHTAFVAKL-KNAVWLR 256


>gi|217978678|ref|YP_002362825.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2]
 gi|217504054|gb|ACK51463.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2]
          Length = 235

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 101/237 (42%), Positives = 143/237 (60%), Gaps = 10/237 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD K   RI+EIGAVELL+   T ++F V++ P  R    EA ++HGI
Sbjct: 1   MREIVLDTETTGLDPKQGHRIVEIGAVELLNSIPTGQSFHVYIHPE-RDMPDEAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL  KP F+ I     DF  E  A+ IAHNA+FD  F+NAE  R   +PL   R++D
Sbjct: 60  SLEFLTGKPLFAEIVPALIDFLGE--AKIIAHNAEFDFRFLNAEFLRAEAEPLAWERVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++ARR+ P + N L++LC R+G+  S R KHGALLD+ +L++VY ++  GG Q    F
Sbjct: 118 TLALARRRFPGASNSLDALCARFGVDTSRRVKHGALLDAEILAEVYAEL-CGGRQAALVF 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                     E        + +R +PL  +++ +E+  H   + TLG+ AIW  Y+S
Sbjct: 177 GGGLGSDAATEAAL-----MRERPEPLAPQLSPQEVAAHAAFVATLGEKAIWQAYLS 228


>gi|323963754|gb|EGB59256.1| DNA polymerase III [Escherichia coli M863]
          Length = 246

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF ++   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMNYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +   +   ++ + T+  I + +  K      T EEL  H+  +   Q  G + +
Sbjct: 187 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|146310412|ref|YP_001175486.1| DNA polymerase III subunit epsilon [Enterobacter sp. 638]
 gi|145317288|gb|ABP59435.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638]
          Length = 245

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 141/242 (58%), Gaps = 18/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGRNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF ++ N   AE + HNA FD+GF++ E  ++N++    + 
Sbjct: 69  HGIADEFLLDKPTFADVADEFIEYIN--GAELVIHNASFDIGFMDYEFSKLNRNIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+ +P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKVTDSLALARKMYPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLLMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +++  +      + V    + +  +      ++EEL EH+  +   Q  G + +
Sbjct: 187 SMAFSTESDSQQQANGGIQRV----VRQDSRLRVILASEEELAEHESRLDIVQKKGGSCL 242

Query: 237 WD 238
           W 
Sbjct: 243 WR 244


>gi|163854939|ref|YP_001629237.1| DNA polymerase III subunit epsilon [Bordetella petrii DSM 12804]
 gi|163258667|emb|CAP40966.1| DNA polymerase III, epsilon chain [Bordetella petrii]
          Length = 241

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 93/240 (38%), Positives = 135/240 (56%), Gaps = 15/240 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTGLD  +  RI+EIG VE+++   T     ++L P+ R + PEAL +HG+
Sbjct: 1   MRQIIFDTETTGLDPSQGHRIVEIGCVEIVNRVVTGNHLHIYLNPD-RDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII- 124
           T EFL DKP F+ +  +F +F   Q AE IAHNA FDV F NAEL  I +  L     + 
Sbjct: 60  TTEFLADKPRFADVAQQFLEFI--QGAELIAHNAAFDVKFFNAELSMIGRGDLSQYCALV 117

Query: 125 -DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L  AR  +P  RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M  G   +  
Sbjct: 118 TDSLQHARTLYPGKRNSLDALCDRHGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
                             + S+L          T +EL EH++ + +L K+     +W +
Sbjct: 178 DVDDASQGGGAGIALGAFDSSVLP-----VLAATADELAEHEEYLASLDKSVGGACVWRK 232


>gi|219871037|ref|YP_002475412.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165]
 gi|219691241|gb|ACL32464.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165]
          Length = 256

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/256 (35%), Positives = 144/256 (56%), Gaps = 17/256 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  +  +R++V D ETTG++          IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSEQQILRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+++HGIT+E L DKP+F+ I  EF +F   + AE I HNA FDVGFI+ E   +  
Sbjct: 60  DAEAMQVHGITNEMLADKPAFAEIADEFIEFI--KGAELIIHNAPFDVGFIDHEFSFLPN 117

Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P        + D+L +AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPEKVAQMCTVTDSLQLARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            MM GG     G   +E       ++    +++   +  +     ++EL EH K ++ + 
Sbjct: 178 -MMTGGQIALIGEDEHEQVKTSSAEQVYQPLTIDTSN-LIVLAPDEKELAEHLKYLELIN 235

Query: 233 K----NAIWDRYISSN 244
           K    N +W R +++ 
Sbjct: 236 KKSKGNCLWTRELATE 251


>gi|198282704|ref|YP_002219025.1| DNA polymerase III subunit epsilon [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665705|ref|YP_002424896.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198247225|gb|ACH82818.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517918|gb|ACK78504.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 248

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 102/240 (42%), Positives = 147/240 (61%), Gaps = 13/240 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++V D ETTG+D K   R+IEIGAVEL+D   T   +Q +L P  R + PEAL++HG+T
Sbjct: 4   RQVVLDTETTGIDWKQGHRVIEIGAVELIDRRVTEAYYQQYLNPQ-RSSDPEALRIHGLT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFL+D+P F+ +   F +F    +AE I HNA FD+GF+N ELQ   K PL    ++DT
Sbjct: 63  DEFLQDQPGFAEVADAFLEFLG--DAELIIHNAPFDLGFLNHELQLAGKAPL-RQAVMDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI----- 181
           L+ ARR+HP  +NDLNSLC+RY +  SHR  HGALLD+ +L++VY+ M  G   +     
Sbjct: 120 LADARRRHPGQKNDLNSLCRRYSVENSHRELHGALLDTRILAEVYLAMTGGQVDMMGMLG 179

Query: 182 -NFGFKTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKNAIWD 238
              G    E R   +++++    + L R +      R + EE   H + +Q +G NA+W+
Sbjct: 180 AAGGSAATEMRSAGDDRRSEGIPAALSRPRGPLRVIRASAEECMLHRQYLQNMGGNALWE 239


>gi|183601084|ref|ZP_02962577.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827]
 gi|188019425|gb|EDU57465.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827]
          Length = 253

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 93/252 (36%), Positives = 141/252 (55%), Gaps = 22/252 (8%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P+ R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL+DKP F+ I  EF +F   + AE I HNA FD+GF++ E  ++NKD      
Sbjct: 66  HGISDEFLQDKPVFADIADEFIEFI--RGAELIIHNAPFDIGFMDYEFSKLNKDIPPTAD 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR+  P  RN+L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCQITDSLVMARQIFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILADVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQTLGKN--- 234
            + F  + +        +  V  +  + R          T EEL EH+K +  + K    
Sbjct: 184 SLAFSMEAD-----TSNESYVEEVQRIDRPVSGLRVLYATDEELIEHEKRLDIVDKKGGK 238

Query: 235 -AIWDRYISSNQ 245
             +W +     +
Sbjct: 239 PCLWRQSPEEGE 250


>gi|215485371|ref|YP_002327802.1| DNA polymerase III subunit epsilon [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312964723|ref|ZP_07778974.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75]
 gi|215263443|emb|CAS07763.1| DNA polymerase III, epsilon subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312290744|gb|EFR18622.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75]
          Length = 243

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 136/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNATFDIGFMDYEFSLLKRDIPKTNT 123

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +   +   ++ + T+  I + +  K      T EEL  H+  +   Q  G   +
Sbjct: 184 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGTCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|167856497|ref|ZP_02479211.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755]
 gi|167852377|gb|EDS23677.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755]
          Length = 256

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/256 (35%), Positives = 145/256 (56%), Gaps = 17/256 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M ++  +R++V D ETTG++          IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MSKQQILRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+++HGIT+E L DKP+F+ I  EF +F   + AE I HNA FDVGFI+ E   +  
Sbjct: 60  EAEAMQVHGITNEMLADKPAFAEIADEFIEFI--KGAELIIHNAPFDVGFIDHEFSFLPN 117

Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P        + D+L +AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPEKVAQMCTVTDSLQLARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            MM GG     G   +E       ++    +++   +  +     ++EL EH K ++ + 
Sbjct: 178 -MMTGGQIALIGEDEHEQAKTSSVEQVYQPLNIDTSN-LIVLAPDEKELAEHLKYLELIN 235

Query: 233 K----NAIWDRYISSN 244
           K    N +W R +++ 
Sbjct: 236 KKSKGNCLWTRELATE 251


>gi|323526835|ref|YP_004228988.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001]
 gi|323383837|gb|ADX55928.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001]
          Length = 244

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/239 (38%), Positives = 133/239 (55%), Gaps = 14/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRIIE+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARTGDRIIEVGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ I  EF DF   Q A+ I HNA FD+GF++AE   +   P+      I
Sbjct: 60  TTEFLSDKPKFAEIADEFRDFI--QGADLIIHNAPFDIGFLDAEFALLGLPPVSTHCGEI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +  
Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                        +   P ++L   D  +    + EEL  H   +  L K     ++W 
Sbjct: 178 DM---LGESHAGGEAHAPRVALDSLD-LVVIAASDEELAAHQAVLDGLDKAIKGTSVWR 232


>gi|77360888|ref|YP_340463.1| DNA polymerase III subunit epsilon [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875799|emb|CAI87020.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 237

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 89/238 (37%), Positives = 139/238 (58%), Gaps = 13/238 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG+D K   RIIEIG VEL++   T   F V++ P  R +  EA+ +HGIT
Sbjct: 4   RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQ-RNSEEEAIDVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SRI 123
           +EFL+DKP F  I  EF+D+   + AE + HNA FD+G ++ E   +N+         ++
Sbjct: 63  NEFLRDKPLFHQIAQEFFDYI--KGAELVIHNAPFDIGHMDNEFSLLNQGYPKTATFCQV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR  HP  +N+L++LC+RY +  + R+ HGALLDS +L+DVY+ M  G  ++N 
Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDVDNAKRTLHGALLDSEILADVYLAMTGGQVKLNL 180

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238
               N+D    ++K  +  +S  +R   +    ++ E   H+  +  +   G + IW 
Sbjct: 181 NQNKNDDT--DQQKGGIRRLS-AQRAPLVVLSASEAEQAAHEARLDIVNNEGGHCIWR 235


>gi|254437617|ref|ZP_05051111.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           307]
 gi|198253063|gb|EDY77377.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           307]
          Length = 242

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/247 (36%), Positives = 138/247 (55%), Gaps = 20/247 (8%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  + DRI+EIGA+EL ++  T RT+  ++ P  R     A  +HGI
Sbjct: 1   MREIVLDTETTGFEPSEGDRIVEIGAIELHNHMPTGRTYHQYINPK-RSMPAGAFGIHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             +DKP F+ I   F DF    +A+ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLDPPQTPTAGQVILRDKPVFADIAQAFVDFIG--DAKLVIHNAAFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +N+  L   + +DTL IAR+K P S   L++LC+R+GI  S+R+ HGALLDS +L++VY+
Sbjct: 118 VNRPLLPMDQSLDTLGIARKKFPGSPASLDALCRRFGIDNSNRTLHGALLDSEILAEVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++ GG Q +           K +           R  PL  +I   E+  H   I++LG
Sbjct: 178 ELI-GGRQPD--LVMGGQTSSKSKTAAEGEWRAQPRPTPLAPKIKAAEVGAHAAFIKSLG 234

Query: 233 KNAIWDR 239
           + A+W++
Sbjct: 235 ETALWNK 241


>gi|15601971|ref|NP_245043.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|31563219|sp|Q9CPE0|DPO3E_PASMU RecName: Full=DNA polymerase III subunit epsilon
 gi|12720318|gb|AAK02190.1| DnaQ [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 253

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 90/254 (35%), Positives = 140/254 (55%), Gaps = 18/254 (7%)

Query: 1   MIRKNK-MRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M   N+  R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ PN R 
Sbjct: 1   MTPVNQPTRQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPN-RP 59

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P+A+K+HGITDE L DKP F+ +  +F D+   Q AE + HNA FDVGF++ E +++N
Sbjct: 60  VDPDAIKVHGITDEMLADKPMFNEVAQQFIDYI--QGAELLIHNAPFDVGFMDYEFKKLN 117

Query: 115 KDPLDPSRII--DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +    +  +  DTL +AR+ +P  RN L++LC R GI  S R+ HGALLD+ +L+DVY+
Sbjct: 118 LNINTDAICMVTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G + +   F  NE        +     ++         +   +EL  H   +  L 
Sbjct: 178 TMTGGQTSL---FDENEPEIAVVAVQEQIQSAVAFSQDLKRLQPNADELQAHLDYLLLLN 234

Query: 233 K----NAIWDRYIS 242
           K    N +W++ ++
Sbjct: 235 KKSKGNCLWEKRLA 248


>gi|227357997|ref|ZP_03842339.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906]
 gi|227161732|gb|EEI46764.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906]
          Length = 252

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 94/251 (37%), Positives = 146/251 (58%), Gaps = 21/251 (8%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P  R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPE-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119
           HGI+DEFL+D PSF+ I  EF  +   + AE I HNA FD+GF++ E Q++N+D      
Sbjct: 66  HGISDEFLEDCPSFAEIADEFLAYI--RGAELIIHNASFDIGFMDYEFQKLNRDIPLTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR   P  RN+L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCQITDSLAMARELFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILADVYLAMTGGQT 183

Query: 180 QINFGFKT--NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKN 234
            + F  +   NE++   + ++ V  +  L+       + + EEL  H+  +  +   G +
Sbjct: 184 ALAFSMEGEPNEEQKGDDIQRIVRPVRGLR-----VIKASAEELVAHEARLDLVVKKGGH 238

Query: 235 AIWDRYISSNQ 245
            +W    +SN 
Sbjct: 239 CLWRPAPASND 249


>gi|313498009|gb|ADR59375.1| DnaQ [Pseudomonas putida BIRD-1]
          Length = 252

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/246 (36%), Positives = 131/246 (53%), Gaps = 12/246 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+   +  RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
           + +HGITD FL  KP F  +  EF+ F   Q A  + HNA FDVGFIN E   + +    
Sbjct: 60  INVHGITDAFLVGKPRFGDVAEEFFQFI--QGATLVIHNAAFDVGFINNEFALLGQQDRA 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D      I+DTL +AR +HP  RN L++LCKRY I  S R  HGALLDS LL+DVY+ M 
Sbjct: 118 DISQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            G + ++      +     +         ++ R        + EEL+ H + +  + K+A
Sbjct: 178 GGQTSLSLAGNGADAEEDGQGAGGSEIRRIVGRTPGRVIMASAEELEAHAERLAAIAKSA 237

Query: 236 ----IW 237
               +W
Sbjct: 238 GGPSLW 243


>gi|323938758|gb|EGB35004.1| DNA polymerase III [Escherichia coli E1520]
          Length = 246

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 136/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIG VE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGGVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +   +   ++ + T+  I + +  K      T EEL  H+  +   Q  G + +
Sbjct: 187 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|148827278|ref|YP_001292031.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG]
 gi|148718520|gb|ABQ99647.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG]
          Length = 256

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/259 (35%), Positives = 147/259 (56%), Gaps = 21/259 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    D   + DTL +AR+ +P  R++L++LC+R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRSNLDALCERLGIDNSKRTLHGALLDAEILADVYLM 175

Query: 174 MMVGGSQINFGFKTNEDRFF----KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
           M  G + +    ++ E        ++  + + +      +  L    T +EL  H + ++
Sbjct: 176 MTGGQTNLFDEEESVESGVIHVMQEKTAEEIKSAVDFSHNLKLLQ-PTNDELQAHLEFLK 234

Query: 230 TLGK----NAIWDRYISSN 244
            + K    N +WD+   +N
Sbjct: 235 MMNKKSGNNCLWDKRFGNN 253


>gi|319780604|ref|YP_004140080.1| DNA polymerase III, subunit epsilon [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166492|gb|ADV10030.1| DNA polymerase III, epsilon subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 233

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 102/235 (43%), Positives = 147/235 (62%), Gaps = 4/235 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLDS++DR+IE+G VEL++   T RTF  ++ P GR    EA  +HGI+
Sbjct: 1   MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHVEAQAVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L  KP+F+ I  E+ DF     A+ +AHNA FDVGF+N E  R+    +D   ++DT
Sbjct: 61  AADLAGKPTFAEIVQEWLDF--TDGAKLVAHNATFDVGFLNVEFGRLGHPVIDNGVVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++ARRKHP   N L++LC+RYGI  + R+KHGALLDS LL++VYI+++ GG Q      
Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNTKRTKHGALLDSELLAEVYIELI-GGKQAALILD 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
           +       E  + +  I +  R  PL  R+T+ E   H   + TLG+ A+W + +
Sbjct: 178 SATAPAQGENVRQI-EIVVAPRPAPLPPRVTEAERAAHAGMVGTLGEKALWLKVL 231


>gi|26990834|ref|NP_746259.1| DNA polymerase III subunit epsilon [Pseudomonas putida KT2440]
 gi|24985842|gb|AAN69723.1|AE016608_9 DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440]
          Length = 252

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 91/246 (36%), Positives = 131/246 (53%), Gaps = 12/246 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+   +  RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
           + +HGITD FL  KP F  +  EF+ F   Q A  + HNA FDVGFIN E   + +    
Sbjct: 60  INVHGITDAFLVGKPRFGDVAEEFFQFI--QGATLVIHNAAFDVGFINNEFALLGQQDRA 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D      I+DTL +AR +HP  RN L++LCKRY I  S R  HGALLDS LL+DVY+ M 
Sbjct: 118 DISQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            G + ++      +     +         ++ R        + EEL+ H + +  + K+A
Sbjct: 178 GGQTSLSLAGNGADTEEDGQGAGGSEIRRIVGRAPGRVIMASAEELEAHAERLAAIAKSA 237

Query: 236 ----IW 237
               +W
Sbjct: 238 GGPSLW 243


>gi|300715435|ref|YP_003740238.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661]
 gi|299061271|emb|CAX58380.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661]
          Length = 244

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 84/249 (33%), Positives = 139/249 (55%), Gaps = 17/249 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   + V+L P+ R  
Sbjct: 1   MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNYHVYLKPD-RLV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI DEFL DKP+F+ I   F ++ +   AE + HNA FD+GF++ E  ++ +
Sbjct: 60  DPEAFGVHGIADEFLADKPTFADIADGFLEYID--GAELVIHNASFDIGFMDYEFAKLGR 117

Query: 116 DPLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +        RI D+L++AR+  P  RN L++LC RY I  + R+ HGALLDS +L++V++
Sbjct: 118 NIPKTETFCRITDSLAMARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDSEILAEVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231
            M  G + + F  + ++ +  +    T+  I+       +    ++ E   H++ +  + 
Sbjct: 178 AMTGGQTLLKFSMEGDQQQ--QSNGDTIHRITR-PASGLVVLSASEAENMAHEERLDLVM 234

Query: 232 --GKNAIWD 238
             G + +W 
Sbjct: 235 KKGGSCLWR 243


>gi|311694693|gb|ADP97566.1| DNA polymerase 3, epsilon subunit [marine bacterium HP15]
          Length = 239

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 94/244 (38%), Positives = 145/244 (59%), Gaps = 14/244 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D  +  RIIEIG VEL++   T R + V++ P+ R+   EA+ +HGI
Sbjct: 4   MRQIVLDTETTGIDPAEGHRIIEIGCVELMERQLTGRNYHVYINPD-REVEAEAITVHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRI 123
           T+EFL DKP F+ I  EF++F   + AE + HNA FDVGF+++E  R+   +   D   I
Sbjct: 63  TNEFLADKPRFAEIADEFFEFI--KGAELVIHNAAFDVGFMDSEFARLKPVRKTADHCGI 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +D+L+IAR +HP  +N+L++LCKRYG+  S+R  HGALLD+ +L+DVY+ +  G + ++ 
Sbjct: 121 VDSLAIARARHPGQKNNLDALCKRYGVDNSNRDLHGALLDAEILADVYLLLTGGQTALSL 180

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDRY 240
               +E+       + +P      R      R +  E + H + +  L K A   +W + 
Sbjct: 181 D-AGSENGGGNGGIRRLP----ADRAPLSVVRASSSEAEAHQEFMSLLEKQAGETVWGKL 235

Query: 241 ISSN 244
            S  
Sbjct: 236 QSPE 239


>gi|315179370|gb|ADT86284.1| DNA polymerase III, epsilon subunit [Vibrio furnissii NCTC 11218]
          Length = 234

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 91/240 (37%), Positives = 135/240 (56%), Gaps = 18/240 (7%)

Query: 11  VFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           V D ETTG++       +  RIIEIGAVE+++   T R F V+L P+ R    EA+++HG
Sbjct: 2   VLDTETTGMNLEGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RAIQDEAIEVHG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---S 121
           ITDEFL DKP +  +  EF DF   + AE +AHNA FDVGF++ E  +++          
Sbjct: 61  ITDEFLVDKPEYKDVHEEFLDFI--RGAELVAHNAPFDVGFMDYEFSKLSIPTAKTDELC 118

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G + +
Sbjct: 119 KVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 178

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWDR 239
            F   + E+       K V       R      R T +E+  H   +  + K+   +W +
Sbjct: 179 QFSGSSQENGMGAGAIKRVAE----GRKALKVLRATADEIQAHQDRLDIVEKSGTCLWRQ 234


>gi|237730199|ref|ZP_04560680.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2]
 gi|226905738|gb|EEH91656.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2]
          Length = 245

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 89/242 (36%), Positives = 138/242 (57%), Gaps = 18/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++ +D     +
Sbjct: 69  HGIADEFLLDKPTFADVADEFLDYI--RGAELVIHNASFDIGFMDYEFAKLKRDIPKTNE 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  + +     +++  T     + +  K      T EEL  H+  +   Q  G + +
Sbjct: 187 TMAFSMEGDS----QQQNDTGIQRIVRQSSKLRVVFATDEELAAHESRLDLVQKKGGSCL 242

Query: 237 WD 238
           W 
Sbjct: 243 WR 244


>gi|22126970|ref|NP_670393.1| DNA polymerase III subunit epsilon [Yersinia pestis KIM 10]
 gi|45442535|ref|NP_994074.1| DNA polymerase III subunit epsilon [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51597279|ref|YP_071470.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP
           32953]
 gi|108806557|ref|YP_650473.1| DNA polymerase III subunit epsilon [Yersinia pestis Antiqua]
 gi|108813076|ref|YP_648843.1| DNA polymerase III subunit epsilon [Yersinia pestis Nepal516]
 gi|145598912|ref|YP_001162988.1| DNA polymerase III subunit epsilon [Yersinia pestis Pestoides F]
 gi|149366915|ref|ZP_01888949.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125]
 gi|153948473|ref|YP_001400036.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP
           31758]
 gi|162419464|ref|YP_001607083.1| DNA polymerase III subunit epsilon [Yersinia pestis Angola]
 gi|165924368|ref|ZP_02220200.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938341|ref|ZP_02226899.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011939|ref|ZP_02232837.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166211805|ref|ZP_02237840.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399939|ref|ZP_02305457.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419869|ref|ZP_02311622.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424264|ref|ZP_02316017.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170023355|ref|YP_001719860.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis
           YPIII]
 gi|186896384|ref|YP_001873496.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928251|ref|YP_002346126.1| DNA polymerase III subunit epsilon [Yersinia pestis CO92]
 gi|229841013|ref|ZP_04461172.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843118|ref|ZP_04463264.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229895464|ref|ZP_04510636.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A]
 gi|229903519|ref|ZP_04518632.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516]
 gi|270487300|ref|ZP_06204374.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27]
 gi|294503098|ref|YP_003567160.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003]
 gi|21960013|gb|AAM86644.1|AE013910_6 DNA polymerase III, epsilon subunit [Yersinia pestis KIM 10]
 gi|45437400|gb|AAS62951.1| DNA polymerase III, epsilon chain [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51590561|emb|CAH22202.1| DNA polymerase III, epsilon chain [Yersinia pseudotuberculosis IP
           32953]
 gi|108776724|gb|ABG19243.1| DNA polymerase III, epsilon subunit [Yersinia pestis Nepal516]
 gi|108778470|gb|ABG12528.1| DNA polymerase III, epsilon subunit [Yersinia pestis Antiqua]
 gi|115346862|emb|CAL19748.1| DNA polymerase III, epsilon chain [Yersinia pestis CO92]
 gi|145210608|gb|ABP40015.1| DNA polymerase III, epsilon subunit [Yersinia pestis Pestoides F]
 gi|149291289|gb|EDM41364.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125]
 gi|152959968|gb|ABS47429.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|162352279|gb|ABX86227.1| DNA polymerase III, epsilon subunit [Yersinia pestis Angola]
 gi|165913719|gb|EDR32338.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923428|gb|EDR40560.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989106|gb|EDR41407.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207576|gb|EDR52056.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962610|gb|EDR58631.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050647|gb|EDR62055.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057113|gb|EDR66876.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749889|gb|ACA67407.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis
           YPIII]
 gi|186699410|gb|ACC90039.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679289|gb|EEO75392.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516]
 gi|229689465|gb|EEO81526.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697379|gb|EEO87426.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701619|gb|EEO89646.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A]
 gi|262361135|gb|ACY57856.1| DNA polymerase III subunit epsilon [Yersinia pestis D106004]
 gi|270335804|gb|EFA46581.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27]
 gi|294353557|gb|ADE63898.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003]
 gi|320014218|gb|ADV97789.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 254

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 88/249 (35%), Positives = 138/249 (55%), Gaps = 17/249 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL DKP+F+ I  EF DF   + AE + HNA FD+GF++ E + + +D      
Sbjct: 66  HGISDEFLADKPTFADITPEFLDFI--RGAELVIHNAAFDIGFMDYEFRMLQQDIPKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAI 236
            + F  +   +       + +  I+            T++EL  H+  +      G + +
Sbjct: 184 SLTFSME--GEVSQNNASEDIQRITR-PASALKIIYATEDELANHESRLDFVMKKGGSCL 240

Query: 237 WDRYISSNQ 245
           W   + + +
Sbjct: 241 WRMPLEAEE 249


>gi|170768002|ref|ZP_02902455.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627]
 gi|170123490|gb|EDS92421.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627]
          Length = 243

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 138/242 (57%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 66  HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +   +   ++ + T+  I + +  K      T EEL+ H+  +   Q  G + +
Sbjct: 184 SMAFAME--GETQQQQGEVTIQRI-VRQASKLRIVFATDEELEAHEARLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|212635110|ref|YP_002311635.1| DNA polymerase III subunit epsilon [Shewanella piezotolerans WP3]
 gi|212556594|gb|ACJ29048.1| DNA polymerase III, epsilon subunit [Shewanella piezotolerans WP3]
          Length = 242

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 87/248 (35%), Positives = 135/248 (54%), Gaps = 20/248 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  +  R+I+ D ETTG++          RIIEIG VE+++   T R +  ++ P  +  
Sbjct: 3   IISSAKRQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVVNRKLTGRHYHEYINP-LQPI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---ELQR 112
             EA+++HGIT+EF+ DKP F  I   F +F +   AE +AHNA FDV F++     LQ 
Sbjct: 62  DEEAIEVHGITNEFVADKPKFHQIAQSFIEFID--GAEIVAHNANFDVSFMDHEFSMLQP 119

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I     +  +I+D+L+IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+
Sbjct: 120 IGPKTAEICQILDSLAIAKYLHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G ++ N   +         ++    N     R K      + +EL  H++ +  + 
Sbjct: 180 IMTGGQTKFNLSSEK------AGQEGGGINRLPKDRAKLKVISASADELTRHEERLDLVA 233

Query: 233 KN--AIWD 238
           K+   IW 
Sbjct: 234 KSGQCIWR 241


>gi|170722630|ref|YP_001750318.1| DNA polymerase III subunit epsilon [Pseudomonas putida W619]
 gi|169760633|gb|ACA73949.1| DNA polymerase III, epsilon subunit [Pseudomonas putida W619]
          Length = 254

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 92/240 (38%), Positives = 130/240 (54%), Gaps = 8/240 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+  S+  RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDKRLVILDTETTGMPVSEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
           + +HGITD FL  KP F  +  EF++F   Q A  + HNA FDVGFIN E   + +    
Sbjct: 60  INVHGITDAFLVGKPRFGDVAEEFFEFI--QGATLVIHNAAFDVGFINNEFALLGQRDRA 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D      I+DTL +AR +HP  RN L++LCKRY I  S R  HGALLDS LL+DVY+ M 
Sbjct: 118 DISQHCTILDTLLLARARHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            G + ++      +     +         +  R        T EEL+ H + +  + K+A
Sbjct: 178 GGQTSLSLAGNGADGDNEGQGSGGSEIRRITGRAPGRVIMATAEELEAHAERLAAIAKSA 237


>gi|167034708|ref|YP_001669939.1| DNA polymerase III subunit epsilon [Pseudomonas putida GB-1]
 gi|166861196|gb|ABY99603.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1]
          Length = 252

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 92/240 (38%), Positives = 129/240 (53%), Gaps = 8/240 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+   +  RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
           + +HGITD FL  KP F  +  EF++F   Q A  + HNA FDVGFIN E   I +    
Sbjct: 60  INVHGITDAFLVGKPRFGDVAEEFFEFI--QGATLVIHNAAFDVGFINNEFALIGQQDRA 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D      I+DTL +AR +HP  RN L++LCKRY I  S R  HGALLDS LL+DVY+ M 
Sbjct: 118 DVSQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            G + ++      +      E        +  R        + EEL+ H + +  + K+A
Sbjct: 178 GGQTSLSLAGHGADAEGEGSEAGGSEIRRITGRTPGRVIMASAEELEAHAERLAAIAKSA 237


>gi|220934132|ref|YP_002513031.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995442|gb|ACL72044.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 235

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 95/240 (39%), Positives = 137/240 (57%), Gaps = 9/240 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +  N  R++V D ETTGL+  +  RIIEIG VEL+    T RTF  +L P+ R+    AL
Sbjct: 1   MSDNNHRQVVLDTETTGLEPAQGHRIIEIGCVELVGRRITRRTFHHYLQPD-REIDEGAL 59

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDP 117
            +HGI++EFL DKP F+ +  EF +F   + AE + HNA FDVGF++ EL+ ++      
Sbjct: 60  AVHGISNEFLADKPRFADVVDEFLEFI--RGAELVIHNAPFDVGFLDHELKLLDAARGQV 117

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D S I+DTL +ARR HP  RN L++LCKRY I  S R  HGALLD+ +L+DVY+ M  G
Sbjct: 118 TDYSSILDTLDLARRMHPGQRNSLDALCKRYQIDNSGRELHGALLDARILADVYLAMTGG 177

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            + ++ G +        E +          R +    R ++ EL  H + ++ L   + W
Sbjct: 178 QTTLSLGGEAAG--VNGEARAESIRRLPEARARLRVIRPSEAELQAHTRLLEKLNPPSPW 235


>gi|319775991|ref|YP_004138479.1| DNA polymerase III subunit epsilon [Haemophilus influenzae F3047]
 gi|329123857|ref|ZP_08252414.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           aegyptius ATCC 11116]
 gi|317450582|emb|CBY86799.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3047]
 gi|327468820|gb|EGF14294.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           aegyptius ATCC 11116]
          Length = 256

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 94/258 (36%), Positives = 144/258 (55%), Gaps = 19/258 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG+       +  RIIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMSQLGAHYEGHRIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E  ++N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFHKLNL 115

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175

Query: 174 MMVGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           M  G + +       ++   R  +E+       ++         + T +EL  H + ++ 
Sbjct: 176 MTGGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKM 235

Query: 231 LGK----NAIWDRYISSN 244
           + K    N +WD+   +N
Sbjct: 236 MNKKSGNNCLWDKRFGNN 253


>gi|226328903|ref|ZP_03804421.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198]
 gi|225202089|gb|EEG84443.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198]
          Length = 250

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 93/244 (38%), Positives = 141/244 (57%), Gaps = 21/244 (8%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P  R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPE-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL+D PSF+ I  EF ++   + AE I HNA FD+GF++ E +++N+D      
Sbjct: 66  HGISDEFLEDCPSFADIADEFLEYI--RGAELIIHNASFDIGFMDYEFRKLNRDIPPTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR   P  RN+L++LC RY I  S R+ HGALLD+ +LSDVY+ M  G +
Sbjct: 124 FCQITDSLAMARALFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQTLGKN--- 234
            + F  +   +   ++      +I  ++R        R T EEL EH+  +  + K    
Sbjct: 184 ALAFSMEGESNNEQEQN-----DIQRIERPVSGLRVIRATAEELAEHESRLDLVEKKGGH 238

Query: 235 AIWD 238
            +W 
Sbjct: 239 CLWR 242


>gi|300112990|ref|YP_003759565.1| DNA polymerase III subunit epsilon [Nitrosococcus watsonii C-113]
 gi|299538927|gb|ADJ27244.1| DNA polymerase III, epsilon subunit [Nitrosococcus watsonii C-113]
          Length = 243

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 91/244 (37%), Positives = 136/244 (55%), Gaps = 12/244 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ K   RIIEIG VEL    +T +TF  +L P  R+    ALK+HG+
Sbjct: 1   MRQIILDTETTGLEPKEGHRIIEIGGVELNCRRRTGQTFHCYLNPE-REVDEGALKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122
           ++EFL DKP F  I  EF  F   + AE + HNA FDVGF++ EL  +  +        +
Sbjct: 60  SNEFLSDKPRFIEIAEEFLAFI--KGAELVIHNAPFDVGFLDHELYLLGSNWGKVSVNCQ 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR++HP  +N+L++LCKRYGI  S R  HGALLD+ +L+ VY+ M  G   ++
Sbjct: 118 VLDTLQLARQRHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILAGVYLAMTGGQVSLS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
                +     +  +     +S  +R      R ++EE   H+  +  + K      +W 
Sbjct: 178 LHEYGDNSTSSRSGEGNYRPVS-AERAPLKIARASREEQRAHEACLTAIDKTSAGACVWH 236

Query: 239 RYIS 242
           +  S
Sbjct: 237 QLDS 240


>gi|126734401|ref|ZP_01750148.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2]
 gi|126717267|gb|EBA14131.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2]
          Length = 241

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 95/246 (38%), Positives = 137/246 (55%), Gaps = 20/246 (8%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  + DRI+EIGAVEL+ +  T RT+  ++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFEPHEGDRIVEIGAVELMGHVPTGRTYHQYINPQ-RSMPAEAFGVHGI 59

Query: 66  TD-------------EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
                          E L+DKP F  +  +F DF    +A+ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQDPKPGQETLRDKPLFKDVAQDFVDFVG--DAKLVIHNAAFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +N+  L   + +DTL+IARRK P S   L++LC+R+ I  S R+ HGALLDS +L++VY+
Sbjct: 118 LNRPLLPMDQALDTLAIARRKFPGSPASLDALCRRFAIDNSSRTLHGALLDSEILAEVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++ GG Q +F      D   +             R +PL  ++T EE   H   ++ LG
Sbjct: 178 ELI-GGRQPDFALAA--DTRSQSAGGQSDEWRPSARPEPLAPKLTIEEAAAHAAFVEQLG 234

Query: 233 KNAIWD 238
             AIW 
Sbjct: 235 DGAIWK 240


>gi|260596631|ref|YP_003209202.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032]
 gi|260215808|emb|CBA28259.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032]
          Length = 243

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 85/242 (35%), Positives = 135/242 (55%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFMV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119
           HGI+DEFL +KP F  +  +F D+   + AE + HNA FD+GF++ E   + +       
Sbjct: 66  HGISDEFLMNKPVFGDVVEDFLDYI--RGAELVIHNASFDIGFMDYEFGMLKRGLPKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            I F  + +  +  + +   +  + + +  +    R   EEL  H+  +   Q  G + +
Sbjct: 184 SIAFAMEGDGQQ--QRDDTGIQRV-VRQASRLKVVRACDEELAAHESRLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|260431958|ref|ZP_05785929.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415786|gb|EEX09045.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 240

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 96/247 (38%), Positives = 137/247 (55%), Gaps = 22/247 (8%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGA+EL ++  T  T+ V++ P  R    EA  +HGI
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAIELWNHVATGETYHVYINPE-RSMPAEAFGVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             KDKP F+ I   F DF    +A  + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQKPEPGQITLKDKPVFAQIGQAFRDFVG--DARLVIHNAAFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +   P+   + +DTL+IAR++ P S   L++LC+R+ I  S+R  HGALLDS +L++VY+
Sbjct: 118 MGLPPIPMEQALDTLAIARKRFPGSPASLDALCRRFNIDNSNRVLHGALLDSEILAEVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++ GG Q +FG          +            R  PL  RIT EE   H+  ++ LG
Sbjct: 178 ELI-GGRQPDFGLSAAR----SDSGGGGETWRPGPRPAPLPPRITAEERAAHEAFVKKLG 232

Query: 233 KNAIWDR 239
            NA+W R
Sbjct: 233 DNALWTR 239


>gi|110834086|ref|YP_692945.1| DNA polymerase III subunit epsilon [Alcanivorax borkumensis SK2]
 gi|110647197|emb|CAL16673.1| DNA polymerase III, epsilon subunit [Alcanivorax borkumensis SK2]
          Length = 247

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 86/232 (37%), Positives = 130/232 (56%), Gaps = 8/232 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTGL+     R+IEIG VE+ +   T  +  ++L P  R+    AL +HGI
Sbjct: 1   MRQVVLDTETTGLEPNDGHRVIEIGCVEMENRRLTGNSLHLYLNPE-REIDAGALAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           + EFL DKP+F  +  EF  F +   AE + HNA FDVGF+N EL+R+            
Sbjct: 60  SSEFLADKPTFDKVVDEFLAFVD--GAELVIHNAPFDVGFLNHELRRLGTRYGTIEQRCG 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+KHP  +N L++LC+RY +   HR  HGALLD+ +L+DVY+ M  G +++ 
Sbjct: 118 VLDTLVMARQKHPGQKNSLDALCRRYFVENGHRELHGALLDAEILADVYLAMTGGQTRLF 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
            G   + +R      +T+  +S   R      R ++ E   H   +  + K 
Sbjct: 178 SGGNDSSERGGGAAAETIRRLS-ADRVPLCVVRASENEQQRHRNKLAAIAKK 228


>gi|325277453|ref|ZP_08143061.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
 gi|324097411|gb|EGB95649.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
          Length = 252

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 88/240 (36%), Positives = 129/240 (53%), Gaps = 8/240 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+   +  RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDKRYVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
           + +HGITD FL  KP F+ +  EF++F   Q A  + HNA FDVGFIN E   + +    
Sbjct: 60  INVHGITDAFLVGKPRFADVADEFFEFI--QGATLVIHNAAFDVGFINNEFALLGQQHRA 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D      ++DTL +AR +HP  RN L++LCKRY I  S R  HGALLDS LL+DVY+ M 
Sbjct: 118 DVSQYCTVLDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            G + ++      +     +         +  R          +EL+ H + +  + K+A
Sbjct: 178 GGQTSLSLAGHGADAEGDGQAGGGSEIRRITGRAPGRVIMANAQELEAHAERLAAIAKSA 237


>gi|145635316|ref|ZP_01791019.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA]
 gi|145267460|gb|EDK07461.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA]
          Length = 255

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 93/257 (36%), Positives = 142/257 (55%), Gaps = 18/257 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDLAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTL 231
           M  G + +        +     ++KT   I             + T +EL  H + ++ +
Sbjct: 176 MTGGQTNLFDEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKMM 235

Query: 232 GK----NAIWDRYISSN 244
            K    N +W++   +N
Sbjct: 236 NKKSGNNCLWEKRFGNN 252


>gi|33151469|ref|NP_872822.1| DNA polymerase III epsilon chain [Haemophilus ducreyi 35000HP]
 gi|33147689|gb|AAP95211.1| DNA polymerase III epsilon chain [Haemophilus ducreyi 35000HP]
          Length = 256

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 91/251 (36%), Positives = 138/251 (54%), Gaps = 19/251 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M     +R++V D ETTG++          IIEIGAVEL++   T RTF V++ P  R+ 
Sbjct: 1   MSEPQIIRQVVLDTETTGMNFNGPPQIGHNIIEIGAVELINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+ FL+DKP+F+ I  EF  F   Q AE I HNA FDV FI+ E   +  
Sbjct: 60  EEEAIKVHGITNAFLQDKPTFAEIAHEFLAFI--QGAELIIHNAPFDVAFIDQEFSSLVN 117

Query: 116 DP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P    +   + DTL +AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPSKTAEMCTVTDTLQMARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTL 231
            M  G   +       E    +++++T   +         +  ++++EE   H + +  L
Sbjct: 178 MMTGGQLAL---LTEEEHSHTQQQRETSLAVKEHFDTSGLIVLQLSQEECQAHQEYLALL 234

Query: 232 GK----NAIWD 238
            K    N +W+
Sbjct: 235 DKKSKGNCLWN 245


>gi|16272104|ref|NP_438306.1| DNA polymerase III subunit epsilon [Haemophilus influenzae Rd KW20]
 gi|1169396|sp|P43745|DPO3E_HAEIN RecName: Full=DNA polymerase III subunit epsilon
 gi|1573090|gb|AAC21808.1| DNA polymerase III, epsilon subunit (dnaQ) [Haemophilus influenzae
           Rd KW20]
          Length = 256

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 93/258 (36%), Positives = 145/258 (56%), Gaps = 19/258 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T     +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPD-RPX 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175

Query: 174 MMVGGSQINFGFKTNED---RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           M  G + +    ++ E    R  +E+       ++         + T +EL  H + ++ 
Sbjct: 176 MTGGQTNLFDEEESVESGVIRVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKM 235

Query: 231 LGK----NAIWDRYISSN 244
           + K    N +WD+   +N
Sbjct: 236 MNKKSGNNCLWDKRFGNN 253


>gi|307261758|ref|ZP_07543424.1| hypothetical protein appser12_13170 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868576|gb|EFN00387.1| hypothetical protein appser12_13170 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 248

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 88/241 (36%), Positives = 134/241 (55%), Gaps = 16/241 (6%)

Query: 11  VFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+   EA+K+HGI
Sbjct: 2   VLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVDEEAIKVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122
           T+EFL+DKP F+ +  EF +F   + AE I HNA FDV F++ E   +   P    +   
Sbjct: 61  TNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLGNPPPKTAEMCS 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++ MM GG    
Sbjct: 119 VTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLAL 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
            G +             +  I+  +    +   +++EE   H++ ++ + K    N IW 
Sbjct: 178 LGEEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWM 237

Query: 239 R 239
           R
Sbjct: 238 R 238


>gi|118161395|gb|ABK64077.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum]
          Length = 238

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 100/238 (42%), Positives = 135/238 (56%), Gaps = 17/238 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +  DRI+EIGAVEL +   T   F  ++ P  R +   AL +HG+
Sbjct: 1   MRQIVLDTETTGLNPRTGDRILEIGAVELNNRMLTGNNFHHYINPE-RDSEEGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123
           T EFL DKP F+ I  EF  F     AE I HNA FD+GF+NAE +R+N  P+       
Sbjct: 60  TTEFLSDKPKFAEIAEEFRAFIA--GAELIIHNAPFDIGFLNAEFKRLNLPPVHEQVHGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A+  HP  RN L++LC RYG++ +HR  HGALLDS LL+DVY+ M  G + ++ 
Sbjct: 118 IDTLVQAKEMHPGKRNSLDALCDRYGVSNAHRKLHGALLDSELLADVYLAMTRGQNSLS- 176

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237
                E+     +   +  + L +    +F   T +EL  H+ TI  L K      IW
Sbjct: 177 ---MEEEVEVAADGAVLEIVPLAE---VIFQSATADELAAHEATIAGLDKAAKGQCIW 228


>gi|145299712|ref|YP_001142553.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852484|gb|ABO90805.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 244

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 94/250 (37%), Positives = 138/250 (55%), Gaps = 17/250 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M      R+I+ D ETTG+++         RIIEIG VE+++   T   + V++ P+ R 
Sbjct: 1   MNTPQLNRQIILDTETTGMNTAGGPIYLGHRIIEIGCVEVINRKLTGNHYHVYIKPD-RL 59

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             PEA+++HGITD FL DKPSFS I ++F DF   + AE IAHNA FDV F++ E  ++ 
Sbjct: 60  VDPEAIQVHGITDVFLADKPSFSQIANDFIDFI--RGAELIAHNAPFDVSFMDYEFGKLG 117

Query: 115 KDPL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +    D   I DTL+IAR   P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+
Sbjct: 118 LNFKTRDICSITDTLAIARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---Q 229
            M  G +++N   +++E    +  + T        R      R   +    H+  +   Q
Sbjct: 178 LMTGGQTKLNLATESSES---ERNQDTSIRRLESNRPPLKVVRAGADIEAVHEARLDLVQ 234

Query: 230 TLGKNAIWDR 239
             G   +W +
Sbjct: 235 KKGGACLWRQ 244


>gi|71726088|gb|AAZ39211.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum]
          Length = 238

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 98/238 (41%), Positives = 134/238 (56%), Gaps = 17/238 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +  DRI+EIG VEL +   T   F  ++ P  R +   AL +HG+
Sbjct: 1   MRQIVLDTETTGLNPRTGDRILEIGGVELNNRMLTGNNFHQYINPE-RDSEEGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123
           T EFL DKP F+ I  EF  F     AE I HNA FD+GF+NAE +R+N  P+       
Sbjct: 60  TTEFLSDKPKFAEIAEEFRAFIA--GAELIIHNAPFDIGFLNAEFKRLNLPPVHEQVHGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A+  HP  RN L++LC RYG++ +HR  HGALLDS LL+DVY+ M  G + ++ 
Sbjct: 118 IDTLVQAKEMHPGKRNSLDALCDRYGVSNAHRKLHGALLDSELLADVYLAMTRGQNSLS- 176

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237
                E+     +   +  + L +    +F   T +EL  H+ +I  L K      IW
Sbjct: 177 ---MEEEVEVAADGAALEIVPLAE---VIFQSATADELAAHEASIAGLDKAAKGQCIW 228


>gi|49082166|gb|AAT50483.1| PA1816 [synthetic construct]
          Length = 247

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 91/242 (37%), Positives = 132/242 (54%), Gaps = 12/242 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+      RIIEIG VEL     T R F V+L P+ R+    A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121
           T+E+LKDKP F  + ++F++F   + A+ I HNA FD+GFIN E   + +    D  +  
Sbjct: 60  TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR +HP  RN+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M  G + +
Sbjct: 118 SVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237
           +      E         +        R      R   EEL  H   +  + K+A    +W
Sbjct: 178 SLAGSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLW 237

Query: 238 DR 239
            +
Sbjct: 238 AQ 239


>gi|170726953|ref|YP_001760979.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908]
 gi|169812300|gb|ACA86884.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908]
          Length = 242

 Score =  235 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 88/249 (35%), Positives = 136/249 (54%), Gaps = 22/249 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  +  R+I+ D ETTG++          RIIEIG VE+++   T R +  ++ P  +  
Sbjct: 3   IVSSSKRQIILDTETTGMNQGAGAIFLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QII 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
             EA+++HGIT+EF+  KP F+ +   F +F +   AE +AHNA FDV F++ E   +  
Sbjct: 62  DEEAIEVHGITNEFVAHKPKFAEVAQSFIEFID--GAEIVAHNANFDVSFMDHEFSLLQP 119

Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 D   I+DTL IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+
Sbjct: 120 VGPKTADICPILDTLEIAKFLHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK-RDKPLFTRITKEELDEHDKTIQTL 231
            M  G ++ N   +       KE  ++     L + R+K      T +EL  H++ +  +
Sbjct: 180 MMTGGQTKFNLSSE-------KEGSESGGIRRLSQSRNKLKVITATADELAMHEERLNLV 232

Query: 232 GKN--AIWD 238
            K+   IW 
Sbjct: 233 AKSGQCIWR 241


>gi|145637904|ref|ZP_01793548.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH]
 gi|145268904|gb|EDK08863.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH]
          Length = 256

 Score =  235 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 94/258 (36%), Positives = 144/258 (55%), Gaps = 19/258 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175

Query: 174 MMVGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           M  G + +       ++   R  +E+       ++         + T +EL  H + ++ 
Sbjct: 176 MTGGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKM 235

Query: 231 LGK----NAIWDRYISSN 244
           L K    N +WD+   +N
Sbjct: 236 LNKKSGNNCLWDKRFGNN 253


>gi|127513039|ref|YP_001094236.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
 gi|126638334|gb|ABO23977.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
          Length = 242

 Score =  235 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 85/248 (34%), Positives = 137/248 (55%), Gaps = 20/248 (8%)

Query: 2   IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++          RIIEIG VE+++   T R F  ++ P  +  
Sbjct: 3   IISNAKRQVILDTETTGMNQGAGAVYFGHRIIEIGCVEVINRKLTGRHFHEYINP-MQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
             EA+ +HGIT+EF+ DKP F+ I   F +F +   AE +AHNA FDV F++ E   +  
Sbjct: 62  DEEAITVHGITNEFVADKPVFAQIAPAFLEFID--GAEIVAHNANFDVSFMDHEFSLLTP 119

Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 D  +++D+L IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+
Sbjct: 120 RGPKTTDICQVLDSLEIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G ++    F+ + ++  +E    +   +   R        + +EL+ H++ +  + 
Sbjct: 180 IMTGGQTK----FELSNEKPGQESGGIIRLAN--NRPSLKVIGASADELNMHEQRLDLVE 233

Query: 233 KN--AIWD 238
           K+   IW 
Sbjct: 234 KSGQCIWR 241


>gi|170739343|ref|YP_001767998.1| DNA polymerase III subunit epsilon [Methylobacterium sp. 4-46]
 gi|168193617|gb|ACA15564.1| DNA polymerase III, epsilon subunit [Methylobacterium sp. 4-46]
          Length = 238

 Score =  235 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 99/241 (41%), Positives = 148/241 (61%), Gaps = 10/241 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +R+IV D ETTG D+K DR++EIG +ELL++  T R F  ++ P  R  S  AL +HG+ 
Sbjct: 2   LREIVLDTETTGTDAKTDRLVEIGGIELLNHIPTGREFHRYINPQ-RPVSQGALAVHGLA 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSRI 123
           D FL DKP F++I   F DF    +A ++ HNA FDVGF+NAE  R+       +D + +
Sbjct: 61  DAFLADKPPFAAILPAFLDFCG--DATFVIHNAAFDVGFLNAEYARLGDAAPPAIDLAGV 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL++ARRKHP++ N+L++LC RYGI  S R+KHGALLD+ +L++VYI+++ GG Q + 
Sbjct: 119 VDTLALARRKHPNAANNLDALCARYGIDNSRRTKHGALLDAQILAEVYIELL-GGKQTSL 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
           G   +     +      P   +    + + +R+T+ E + H      LG  AIW  YI  
Sbjct: 178 GLTLDVASTVRVATLGGPAAHV---PRAVRSRLTQAEREAHAAFTAGLGGGAIWRDYIGE 234

Query: 244 N 244
           +
Sbjct: 235 D 235


>gi|309750446|gb|ADO80430.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2866]
          Length = 256

 Score =  235 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 94/258 (36%), Positives = 144/258 (55%), Gaps = 19/258 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175

Query: 174 MMVGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           M  G + +       ++   R  +E+       ++         + T +EL  H + ++ 
Sbjct: 176 MTGGQTNLFDEEESVESEVIRVVQEKAAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKM 235

Query: 231 LGK----NAIWDRYISSN 244
           L K    N +WD+   +N
Sbjct: 236 LNKKSGNNCLWDKRFGNN 253


>gi|323259856|gb|EGA43487.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
          Length = 243

 Score =  235 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 66  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 123

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +    R  ++ ++T+  I + +  +      + EEL  H+  +   Q  G + +
Sbjct: 184 SMTFAMEGETQR--QQGEETIQRI-VRQASRLRVVFASDEELAAHESRLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|16759250|ref|NP_454867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16763647|ref|NP_459262.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29142975|ref|NP_806317.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56414616|ref|YP_151691.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363544|ref|YP_002143181.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|205351595|ref|YP_002225396.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207855776|ref|YP_002242427.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|60392203|sp|P0A1G9|DPO3E_SALTY RecName: Full=DNA polymerase III subunit epsilon
 gi|60392204|sp|P0A1H0|DPO3E_SALTI RecName: Full=DNA polymerase III subunit epsilon
 gi|25299960|pir||AF0534 DNA polymerase III epsilon chain [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|1172157|gb|AAA86422.1| dnaQ [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|1794290|gb|AAC44792.1| DNA polymerase III epsilon chain [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16418764|gb|AAL19221.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16501541|emb|CAD08718.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138607|gb|AAO70177.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56128873|gb|AAV78379.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095021|emb|CAR60567.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|205271376|emb|CAR36169.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206707579|emb|CAR31853.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261245489|emb|CBG23279.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267991951|gb|ACY86836.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156885|emb|CBW16361.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|332987210|gb|AEF06193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 243

 Score =  235 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 66  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 123

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +    R  ++ + T+  I + +  +      ++EEL  H+  +   Q  G + +
Sbjct: 184 SMTFAMEGETQR--QQGEATIQRI-VRQASRLRVVFASEEELAAHESRLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|238913716|ref|ZP_04657553.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 246

 Score =  235 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPVFADVIDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +    R  ++ + T+  I + +  +      ++EEL  H+  +   Q  G + +
Sbjct: 187 SMTFAMEGETQR--QQGEATIQRI-VRQASRLRVVFASEEELAAHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|167623805|ref|YP_001674099.1| DNA polymerase III subunit epsilon [Shewanella halifaxensis
           HAW-EB4]
 gi|167353827|gb|ABZ76440.1| DNA polymerase III, epsilon subunit [Shewanella halifaxensis
           HAW-EB4]
          Length = 242

 Score =  235 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 20/242 (8%)

Query: 8   RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+I+ D ETTG++          RIIEIG VE+++   T R +  ++ P  +    EA+ 
Sbjct: 9   RQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QPIDEEAIA 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPL 118
           +HGIT+EF+ DKP F  I   F +F +   AE +AHNA FDV F++ E   +        
Sbjct: 68  VHGITNEFVADKPKFHEIAQSFIEFID--GAEIVAHNANFDVSFMDHEFSMLQPRGPKTA 125

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  +I+D+L+IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+ M  G 
Sbjct: 126 DICQILDSLAIAKHLHPGQKNNLDALCKRYGIDNSARDLHGALLDAEILADVYLLMTGGQ 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
           ++ N   +          + +        R K      + +EL  H++ +  + K+   +
Sbjct: 186 TKFNLSSEKAGQEGGGIHRLSA------DRSKLKVIAASADELIRHEERLDLVAKSGQCL 239

Query: 237 WD 238
           W 
Sbjct: 240 WR 241


>gi|113970494|ref|YP_734287.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-4]
 gi|114047729|ref|YP_738279.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-7]
 gi|113885178|gb|ABI39230.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4]
 gi|113889171|gb|ABI43222.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7]
          Length = 242

 Score =  235 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 89/248 (35%), Positives = 136/248 (54%), Gaps = 20/248 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++          RIIEIG VE+++   T R +  ++ P G+  
Sbjct: 3   IISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QR 112
            PEA+ +HGITDE + ++P F  I  EF DF +   AE +AHNA FDV F++ E    Q 
Sbjct: 62  DPEAIAVHGITDERVANEPRFHQIAQEFIDFIS--GAEIVAHNANFDVSFMDHEFSLLQP 119

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +     D   I+D+L IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+
Sbjct: 120 LGPKTSDICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRLYHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G ++ N    +NE+    +E   +        +     R + +EL  H++ +  + 
Sbjct: 180 AMTGGQTKFNL---SNEE--VGQEAGGIQRFDPTSLN-LKVIRASADELVMHEERLDLVA 233

Query: 233 K--NAIWD 238
           K    +W 
Sbjct: 234 KSGKCLWR 241


>gi|91223500|ref|ZP_01258765.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|254228411|ref|ZP_04921837.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25]
 gi|262393546|ref|YP_003285400.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|269966277|ref|ZP_06180366.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
 gi|91191586|gb|EAS77850.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|151938999|gb|EDN57831.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25]
 gi|262337140|gb|ACY50935.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|269829192|gb|EEZ83437.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
          Length = 240

 Score =  235 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 94/239 (39%), Positives = 142/239 (59%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R+  PEA++
Sbjct: 11  RIVVLDTETTGMNREGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPEAVE 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118
           +HGITDEFL DKP ++S+  EF +F   + AE +AHNA FD GF++ E   ++       
Sbjct: 70  VHGITDEFLVDKPEYASVHQEFLEFI--KGAELVAHNAPFDTGFMDYEFGMLDPNIGKTD 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLFMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           + + F     E        +T+  I    R      R + +EL+ H K ++ +  + IW
Sbjct: 188 TSLEFNANKQEGGV-----ETIRRIE--GRKALKVLRASADELEAHQKRLELVN-DCIW 238


>gi|15597013|ref|NP_250507.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO1]
 gi|107101248|ref|ZP_01365166.1| hypothetical protein PaerPA_01002281 [Pseudomonas aeruginosa PACS2]
 gi|218892230|ref|YP_002441097.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa LESB58]
 gi|254234910|ref|ZP_04928233.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719]
 gi|296389793|ref|ZP_06879268.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAb1]
 gi|313110514|ref|ZP_07796399.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016]
 gi|9947801|gb|AAG05205.1|AE004608_4 DNA polymerase III, epsilon chain [Pseudomonas aeruginosa PAO1]
 gi|7229492|gb|AAF42851.1| mismatch repair protein MutD [Pseudomonas aeruginosa PAO1]
 gi|126166841|gb|EAZ52352.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719]
 gi|218772456|emb|CAW28238.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa LESB58]
 gi|310882901|gb|EFQ41495.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016]
          Length = 246

 Score =  235 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 91/242 (37%), Positives = 132/242 (54%), Gaps = 12/242 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+      RIIEIG VEL     T R F V+L P+ R+    A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121
           T+E+LKDKP F  + ++F++F   + A+ I HNA FD+GFIN E   + +    D  +  
Sbjct: 60  TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR +HP  RN+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M  G + +
Sbjct: 118 SVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237
           +      E         +        R      R   EEL  H   +  + K+A    +W
Sbjct: 178 SLAGSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLW 237

Query: 238 DR 239
            +
Sbjct: 238 AQ 239


>gi|145628970|ref|ZP_01784769.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21]
 gi|144978473|gb|EDJ88196.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21]
          Length = 256

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 94/258 (36%), Positives = 145/258 (56%), Gaps = 19/258 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175

Query: 174 MMVGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           M  G + +       ++   R  +E+       ++         + T +EL  H + ++ 
Sbjct: 176 MTGGQTNLFDEEESVESEVIRVVQEKAAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKM 235

Query: 231 LGK----NAIWDRYISSN 244
           L K    N +WD+   +N
Sbjct: 236 LNKKSGNNCLWDKRFGNN 253


>gi|227329796|ref|ZP_03833820.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 245

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 140/242 (57%), Gaps = 16/242 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL DKP+++ I  +F DF   + AE + HNA FD+GF++ E + +N+D      
Sbjct: 66  HGISDEFLADKPTYADIVDDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRDLPKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            + F  +  E +   E  +T+  I +  +         + EL  H++ +  +   G + +
Sbjct: 184 SLTFSME-GETQQKSENTETIQRI-VRPQSALKVLYADEAELLAHEQRLDLIAKKGGSCL 241

Query: 237 WD 238
           W 
Sbjct: 242 WR 243


>gi|168238647|ref|ZP_02663705.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194736138|ref|YP_002113281.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|204927010|ref|ZP_03218212.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194711640|gb|ACF90861.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288607|gb|EDY27984.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204323675|gb|EDZ08870.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322614544|gb|EFY11473.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620062|gb|EFY16934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623357|gb|EFY20196.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629345|gb|EFY26124.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632065|gb|EFY28819.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637197|gb|EFY33899.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640310|gb|EFY36970.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645923|gb|EFY42443.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652378|gb|EFY48732.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652582|gb|EFY48932.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660392|gb|EFY56628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664545|gb|EFY60738.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669402|gb|EFY65552.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670948|gb|EFY67081.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678813|gb|EFY74868.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681842|gb|EFY77867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687968|gb|EFY83934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194322|gb|EFZ79517.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197738|gb|EFZ82870.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203466|gb|EFZ88491.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206789|gb|EFZ91742.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213392|gb|EFZ98193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214685|gb|EFZ99436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221462|gb|EGA05878.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226220|gb|EGA10436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229992|gb|EGA14112.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233731|gb|EGA17820.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238575|gb|EGA22633.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244263|gb|EGA28272.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246424|gb|EGA30407.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252193|gb|EGA36046.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258046|gb|EGA41725.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323265129|gb|EGA48628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272692|gb|EGA56099.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 246

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +    R  ++ ++T+  I + +  +      + EEL  H+  +   Q  G + +
Sbjct: 187 SMTFAMEGETQR--QQGEETIQRI-VRQASRLRVVFASDEELAAHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|92115747|ref|YP_575476.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14]
 gi|91798641|gb|ABE61016.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14]
          Length = 239

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 96/239 (40%), Positives = 136/239 (56%), Gaps = 9/239 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV DIETTGLD  + DR++EIG VE+ +   T +TF  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDIETTGLDPLRGDRVVEIGCVEIFNRMPTGQTFHRYINPE-RDMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL +KP F+ I  +F +F    +A  + HNA FD+ FINAEL R+    +   R++D
Sbjct: 60  SSEFLAEKPLFTHIVDDFLEFIG--DAPLVIHNASFDISFINAELDRLKMRTIGRDRLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++ G  Q     
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLI-GARQPQLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
                R          ++   +R  PL  R+T  +   H   + TLG+ AIW  +  + 
Sbjct: 177 AETASRRTGGTL----DMPRRQRTVPLAPRVTDADRIAHRDFVATLGEKAIWKEFAGTE 231


>gi|167995093|ref|ZP_02576183.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232195|ref|ZP_02657253.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168239998|ref|ZP_02664930.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261338|ref|ZP_02683311.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465317|ref|ZP_02699199.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819164|ref|ZP_02831164.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194445947|ref|YP_002039498.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449519|ref|YP_002044248.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194471875|ref|ZP_03077859.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197248793|ref|YP_002145264.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263319|ref|ZP_03163393.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198244203|ref|YP_002214220.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389565|ref|ZP_03216176.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|213419655|ref|ZP_03352721.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213428417|ref|ZP_03361167.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213646369|ref|ZP_03376422.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213852644|ref|ZP_03382176.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289828784|ref|ZP_06546543.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|194404610|gb|ACF64832.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407823|gb|ACF68042.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458239|gb|EDX47078.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195631798|gb|EDX50318.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197212496|gb|ACH49893.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241574|gb|EDY24194.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197938719|gb|ACH76052.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602010|gb|EDZ00556.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205327163|gb|EDZ13927.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333347|gb|EDZ20111.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339912|gb|EDZ26676.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344083|gb|EDZ30847.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349720|gb|EDZ36351.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|312911229|dbj|BAJ35203.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320084513|emb|CBY94305.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224918|gb|EFX49979.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323128579|gb|ADX16009.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326621964|gb|EGE28309.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326626623|gb|EGE32966.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 246

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +    R  ++ + T+  I + +  +      ++EEL  H+  +   Q  G + +
Sbjct: 187 SMTFAMEGETQR--QQGEATIQRI-VRQASRLRVVFASEEELAAHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|163850914|ref|YP_001638957.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens
           PA1]
 gi|163662519|gb|ABY29886.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens
           PA1]
          Length = 241

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 93/246 (37%), Positives = 145/246 (58%), Gaps = 10/246 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M  +  +R+IV D ETTG +++N DR+IEIG VEL+++ +T  TF   + P  R  S  A
Sbjct: 1   MESQKMLREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---D 116
             +HGI+D  L DKP F+ +   F +F    +A  + HNA FDVGF+N E  R+      
Sbjct: 60  FAVHGISDAMLADKPVFAEVVDAFLEFCG--DARLVIHNAPFDVGFLNMEFARLGPAAPK 117

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +    ++DTL +ARRKHP + N+L++LC RYG+  + R KHGALLD+ +L++VY++++ 
Sbjct: 118 AIALEDVVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL- 176

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236
           GG Q + G    E            +  +    +P+ +R+T+ E   HD  +++LG NA+
Sbjct: 177 GGKQTSLGLSIAEPAETVALGALTDSGPVG--PRPIRSRLTEGERLRHDSFVESLGTNAV 234

Query: 237 WDRYIS 242
           W  Y+ 
Sbjct: 235 WREYME 240


>gi|296536098|ref|ZP_06898231.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC
           49957]
 gi|296263574|gb|EFH10066.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC
           49957]
          Length = 241

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 82/237 (34%), Positives = 128/237 (54%), Gaps = 9/237 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG D    DR++E+ AVE+++   T R F + + P  R    EA K+HG T
Sbjct: 3   RALVLDTETTGFDPLTGDRVLEVAAVEIVNLVPTGRHFHMLIDPE-RDVPEEATKVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E L  KP F+ I     DF  +     IAHNA FD GF++ EL++     LD +R++DT
Sbjct: 62  REMLIGKPKFAEIAPAMLDFLGDD--PIIAHNAPFDFGFLDWELKKAGHKALDRARMVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LC+RYGI  S R+ H ALLD  LL+ VY+++M GG Q      
Sbjct: 120 LALAKKRFPGLPNSLDALCRRYGIDNSMRTAHNALLDVQLLAQVYLELM-GGKQPGLELA 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243
           +   R        +   +     +P   + ++ EL  H   +  + K+ +W  ++ +
Sbjct: 179 S---RPAVSTPVVLQIDATPVARQPRPIQPSEAELAAHAAFLAKI-KDPLWAAFLPA 231


>gi|291616383|ref|YP_003519125.1| DnaQ [Pantoea ananatis LMG 20103]
 gi|291151413|gb|ADD75997.1| DnaQ [Pantoea ananatis LMG 20103]
          Length = 243

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 89/249 (35%), Positives = 141/249 (56%), Gaps = 18/249 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIG VE+++   T   F ++L P+ R  
Sbjct: 1   MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGGVEVINRRLTGNNFHMYLKPD-RLV 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI DEFL DKP+FS I  EF D+   + AE + HNA FD+GF++ E  ++ +
Sbjct: 59  DPEAFGVHGIADEFLLDKPTFSDIADEFLDYI--RGAELVIHNASFDIGFMDYEFGKLQR 116

Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                    +I D+L++ARR  P  RN L++LC RY I  S R+ HGALLD+ +L++V++
Sbjct: 117 GIEKTETFCKITDSLAMARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAEILAEVFL 176

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231
            M  G  Q +  F + E+R  +++ + +  I+            + EE+++H+  +  + 
Sbjct: 177 TMTGG--QTSLSFSSEEERARQQQSEGIQRIAR-PSSGLRVVTASDEEVNQHESRLDLIM 233

Query: 232 --GKNAIWD 238
             G + +W 
Sbjct: 234 KKGGSCLWR 242


>gi|161504623|ref|YP_001571735.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865970|gb|ABX22593.1| hypothetical protein SARI_02738 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 246

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 136/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +    R  ++ + T+  I + +  +      T EEL  H+  +   Q  G + +
Sbjct: 187 SMTFAIEGETQR--QQGEATIQRI-VRQASRLRVVFATDEELAAHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|253689504|ref|YP_003018694.1| DNA polymerase III, epsilon subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756082|gb|ACT14158.1| DNA polymerase III, epsilon subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 245

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 140/242 (57%), Gaps = 16/242 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNMLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL DKP+++ I  +F DF   + AE + HNA FD+GF++ E + +N+D      
Sbjct: 66  HGISDEFLADKPTYADIVDDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRDLPKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            + F  +  E +   E  +T+  I +  +         + EL  H++ +  +   G + +
Sbjct: 184 SLTFSME-GETQQKNENTETIQRI-VRPQSALKVLYADEAELVAHEQRLDLIAKKGGSCL 241

Query: 237 WD 238
           W 
Sbjct: 242 WR 243


>gi|116049766|ref|YP_791427.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584987|gb|ABJ11002.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 246

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 91/242 (37%), Positives = 132/242 (54%), Gaps = 12/242 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+      RIIEIG VEL     T R F V+L P+ R+    A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121
           T+E+LKDKP F  + ++F++F   + A+ I HNA FD+GFIN E   + +    D  +  
Sbjct: 60  TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVSEYC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR +HP  RN+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M  G + +
Sbjct: 118 SVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237
           +      E         +        R      R   EEL  H   +  + K+A    +W
Sbjct: 178 SLAGSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLW 237

Query: 238 DR 239
            +
Sbjct: 238 AQ 239


>gi|62178830|ref|YP_215247.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224582105|ref|YP_002635903.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62126463|gb|AAX64166.1| DNA polymerase III, epsilon subunit, 3-5 exonucleolytic
           proofreading function [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224466632|gb|ACN44462.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322713281|gb|EFZ04852.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 246

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +    R  ++ + T+  I + +  +      T+EEL  H+  +   Q  G + +
Sbjct: 187 SMTFAMEGETQR--QQGEATIQRI-VRQASRLRVVFATEEELAAHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|257095469|ref|YP_003169110.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047993|gb|ACV37181.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 238

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 95/240 (39%), Positives = 134/240 (55%), Gaps = 13/240 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL+ K   RIIEI  VE+ +   TNR F  +L P+ R     AL +HGI
Sbjct: 1   MRQIFLDTETTGLEHKFGHRIIEIACVEMRNRRLTNRHFHRYLNPD-RDIDAGALSVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           + EFL DKP F+ +  EF DF   + AE + HNA FDVGF+NAEL  ++  P+D     +
Sbjct: 60  SREFLLDKPRFADVAVEFLDFV--RGAELVIHNAAFDVGFLNAELALLDMAPVDTVCHGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL +A+  HP  +N+LN+LC+RYG+  SHR+ HGALLD+ +L++VY+ M  G   +  
Sbjct: 118 CDTLRMAKDLHPGKKNNLNALCERYGVDNSHRTLHGALLDAEILAEVYLAMTRGQESLIM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWDR 239
               +         +T    S  +R      R + EEL EH + +  +        +W R
Sbjct: 178 DLGDDNGGRLDTAGRTP---SPGRRQTLQVKRASPEELAEHQQVLTAIQEASKGKCLWLR 234


>gi|254295485|ref|YP_003061508.1| DNA polymerase III subunit epsilon [Hirschia baltica ATCC 49814]
 gi|254044016|gb|ACT60811.1| DNA polymerase III, epsilon subunit [Hirschia baltica ATCC 49814]
          Length = 233

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 144/239 (60%), Gaps = 10/239 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGL +K  DRIIE+GAVE++D   T R F   + P  R+ S + +++ GI
Sbjct: 1   MREIVFDTETTGLSAKDGDRIIELGAVEIVDLLPTGREFHRLIYPE-RQVSEDTIRITGI 59

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           TDE LK KP FS   ++ EF DF   +++  +AHNA+FD GF+N E++R+        R 
Sbjct: 60  TDEMLKGKPVFSDPSVYKEFLDFI--EDSPLVAHNAEFDRGFLNEEMRRVGGPDFPKERC 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL++AR K P +   L++LCKR+ I+++ R  H A++DS LL+ VY+++  GG   +F
Sbjct: 118 VDTLALAREKFPGASATLDALCKRFDISLAKRDVHTAVVDSQLLASVYLEL-RGGRAHSF 176

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
            F   E+    + +         +R K L + +T+EE   H   I T  +  +W++ ++
Sbjct: 177 EF---ENEGQSDAEVAFKRTQRRQRPKKLRSFLTEEENAAHQSFIATFDETPVWNKILT 232


>gi|229590113|ref|YP_002872232.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens SBW25]
 gi|229361979|emb|CAY48879.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens SBW25]
          Length = 248

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 96/245 (39%), Positives = 136/245 (55%), Gaps = 15/245 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R +V D ETTG+      RIIEIG VEL+    T R F V+L P+ R +   A+ +HGI
Sbjct: 3   IRSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPD-RDSDEGAIGVHGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121
           TDEFLK KP F+ +  EF++F N   A+ I HNA FDVGFIN E   + +    D     
Sbjct: 62  TDEFLKGKPRFAEVADEFFEFIN--GAQLIIHNAAFDVGFINNEFALMGQTDRADISKHC 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + +
Sbjct: 120 SILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSL 179

Query: 182 NFGFKTNEDRFFKEEKKTVP---NISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---- 234
           +     ++     E     P         R      R ++++L EH   ++ + K+    
Sbjct: 180 SLAGNASDGTGSAEGSGNRPSEIRRLPADRKPTPIIRASEQDLAEHAARLEAIAKSAGAP 239

Query: 235 AIWDR 239
           A+W +
Sbjct: 240 ALWTQ 244


>gi|145639808|ref|ZP_01795410.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII]
 gi|145271176|gb|EDK11091.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII]
          Length = 256

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 93/258 (36%), Positives = 144/258 (55%), Gaps = 19/258 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175

Query: 174 MMVGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           M  G + +       ++   R  +E+       ++         + T +EL  H + ++ 
Sbjct: 176 MTGGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKM 235

Query: 231 LGK----NAIWDRYISSN 244
           + K    N +WD+   +N
Sbjct: 236 MNKKSGNNCLWDKRFGNN 253


>gi|320538891|ref|ZP_08038567.1| DNA polymerase III epsilon subunit [Serratia symbiotica str.
           Tucson]
 gi|320031051|gb|EFW13054.1| DNA polymerase III epsilon subunit [Serratia symbiotica str.
           Tucson]
          Length = 247

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 86/244 (35%), Positives = 135/244 (55%), Gaps = 21/244 (8%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R + V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119
           HGI+DEFL DKP+F  I  EF DF   +  E + HNA FD+GF++ E + + +       
Sbjct: 66  HGISDEFLADKPTFDQIADEFLDFI--RGGELVIHNAAFDIGFMDHEFRLLQQGIPKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQTL---GKN 234
            + F  + +      ++  +  +I  + R          + +EL  H+  +  +   G +
Sbjct: 184 SMTFQMEGD-----TQQTNSAQDIQRIVRPAMAMKVVYASDKELAAHEARLDLVAQKGGS 238

Query: 235 AIWD 238
            +W 
Sbjct: 239 CLWR 242


>gi|85713113|ref|ZP_01044147.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145]
 gi|85693061|gb|EAQ31025.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145]
          Length = 236

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 85/238 (35%), Positives = 136/238 (57%), Gaps = 12/238 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG++     RIIEIG VEL+D   T   F V++ P  R    EA+ +HGI
Sbjct: 1   MRQIVLDTETTGINPDDGHRIIEIGCVELIDRKPTGNHFHVYINPE-RVVEDEAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSR 122
           T+E+L DKP F+ +   F DF   + ++ + HNA FDVG ++AE +R+ K      D   
Sbjct: 60  TNEYLADKPVFAQVVDAFIDFI--KGSQLVIHNAPFDVGHMDAEFKRLGKMYGKTYDYCD 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++D+L +AR K P  RN L++LCK + +  S R  HGALLD+ +L+DVY+ M  G + ++
Sbjct: 118 VLDSLQLAREKRPGQRNSLDALCKAFHVDNSARELHGALLDAEILADVYLAMTGGQTALS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIW 237
              +  ++    +E   + + ++  R +    R T +E ++H + +  +   G   +W
Sbjct: 178 LHGQNQDNE--NQEPGAIAHQAIKNRPQLKVLRATADEEEQHQQRLAIVKSEGGACLW 233


>gi|114769767|ref|ZP_01447377.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [alpha proteobacterium HTCC2255]
 gi|114549472|gb|EAU52354.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [alpha proteobacterium HTCC2255]
          Length = 230

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 146/234 (62%), Gaps = 7/234 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV+D ETTG D    DRI+EIGAVEL  +  T R +  ++ P  R   P A ++HG+
Sbjct: 1   MREIVWDTETTGFDPFAGDRIVEIGAVELNQHLPTGRVYHQYINPE-RDMPPGAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FLKD P FS+I  +F DF    +A  IAHNAKFD+ FINAEL+  N   +  ++ +D
Sbjct: 60  SIDFLKDFPVFSNIARDFIDFVG--DATLIAHNAKFDMKFINAELKNANLPQVPLNQSLD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IAR+K P ++N L++LC+R+ I  S R KHGALLDS +L++VY++++ GG Q +F  
Sbjct: 118 TLEIARKKFPGAQNSLDALCRRFNIDNSSRQKHGALLDSEILAEVYLELV-GGRQPDFSL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                   +    +  + + L R K L + +T  E   H+  I++L  +AIW++
Sbjct: 177 SLVGQSKLESTSDS--SYAALSRPKKLNSLVTDVEKKAHNDFIKSLCASAIWNK 228


>gi|114571517|ref|YP_758197.1| DNA polymerase III subunit epsilon [Maricaulis maris MCS10]
 gi|114341979|gb|ABI67259.1| DNA polymerase III, epsilon subunit [Maricaulis maris MCS10]
          Length = 230

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 93/234 (39%), Positives = 133/234 (56%), Gaps = 9/234 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD    DR+ E+G VE++D+  T +TF  ++ P  R    E +++ G+
Sbjct: 1   MREIVFDTETTGLDPNTGDRVTELGCVEIIDFIPTGKTFHAYVNPQ-RSVPKEVVEITGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T EFL DKP F  +  +F +F    +A  +AHNA FD GFIN EL R+  D     R  D
Sbjct: 60  TTEFLADKPLFDEVGPQFVEFVG--DATMVAHNAPFDRGFINMELARLGLDIYPDDRFKD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T  IAR K P S   L++LCKR+ I++  R KHGAL+DS LL++VY+++M G ++     
Sbjct: 118 TARIARAKFPGSYVSLDALCKRFDISLDTRDKHGALIDSLLLAEVYLELMGGRTR---AL 174

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             +        K   P  +   R +PL  R T  E   H   +  +G+NA+W +
Sbjct: 175 DLSGQGSGGGGKVVFP--ARSPRAEPLTGRQTDSERAAHAAFVDEMGENALWKK 226


>gi|331007390|ref|ZP_08330576.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989]
 gi|330418798|gb|EGG93278.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989]
          Length = 239

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 94/242 (38%), Positives = 141/242 (58%), Gaps = 14/242 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+  K  RIIEIG VEL +   T R +  ++ P  R+   +A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPSKGHRIIEIGCVELENRKLTGRHYHQYIQPE-REIEAQAMEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPS 121
           T+E+LK KP+F  I  EF  F +   AE I HNA FDVGFIN EL +      ++     
Sbjct: 60  TNEYLKGKPTFVQIMDEFMAFVD--GAELIIHNAPFDVGFINNELAKYGDKKYQNITHYC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +IDTL +AR+KHP  +N+L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G   +
Sbjct: 118 GVIDTLVMARQKHPGQKNNLDALCKRYGVDNSQRDLHGALLDSEILADVYLLMTGGQRAL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237
           +    ++ED     +   +  ++ +        + + EEL +H++ +  + K      +W
Sbjct: 178 SLSSASSEDDSGSRQVTGIRRLAEV--PNLPIIQASPEELAQHEQKLAAIDKASQGQCVW 235

Query: 238 DR 239
            +
Sbjct: 236 LK 237


>gi|149908875|ref|ZP_01897535.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
 gi|149808149|gb|EDM68090.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
          Length = 245

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 94/239 (39%), Positives = 139/239 (58%), Gaps = 19/239 (7%)

Query: 8   RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IVFD ETTG++          R+IEIG +EL++   T RT+ V++ P+ R   PEA+ 
Sbjct: 14  RVIVFDTETTGMNMGAGGVHIGHRVIEIGCIELINRRPTGRTYHVYIKPD-RLVDPEAIA 72

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118
           +HGITDEFL+DKPSF++I  EF  F     AE +AHNA FD  F++ E + +NK      
Sbjct: 73  VHGITDEFLQDKPSFATIADEFIAFI--VGAELVAHNASFDTNFLDHEFRLLNKGLPATK 130

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +  +I DTL+IA++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 131 EICKITDTLAIAKKLFPGKRNNLDVLCTRYGIDNSHRTLHGALLDAEILADVYLFMTGGQ 190

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           +++N    +   +     +          R      + T +EL  HD+ +  +  +A+W
Sbjct: 191 TKLNLSQDSANSQGGGIRRVAA------SRAPLKVVQATDDELKAHDERL-GIVGDALW 242


>gi|188580742|ref|YP_001924187.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001]
 gi|179344240|gb|ACB79652.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001]
          Length = 236

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 92/240 (38%), Positives = 143/240 (59%), Gaps = 10/240 (4%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+IV D ETTG D+KN DR+IEIG VEL+++ +T + +   + P  R  S  A  +HGI
Sbjct: 2   LREIVLDTETTGTDAKNGDRLIEIGCVELINHVQTGKFYHQLINPQ-RAVSEGAFAVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSR 122
           +D  L DKP F+ +   F  F    +A  + HNA FDVGF+N E  R+       +    
Sbjct: 61  SDAMLADKPVFADVVDAFVAFCG--DARLVIHNAPFDVGFLNMEFARLGPAAPKAIPLED 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +ARRKHP + N+L++LC RYG+  + R KHGALLD+ +L++VY++++ GG Q +
Sbjct: 119 VVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQTS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
            G    E       +    +  +    +P+ +R+T+ E   HD  +++LG NA+W  Y+ 
Sbjct: 178 LGLSIAEPTEAIAIESATDSGPVG--PRPMRSRLTESERLRHDSFVESLGTNAVWREYLE 235


>gi|212709216|ref|ZP_03317344.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM
           30120]
 gi|212688128|gb|EEB47656.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM
           30120]
          Length = 253

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 89/246 (36%), Positives = 138/246 (56%), Gaps = 22/246 (8%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P+ R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL+DKP F+ I  EF +F   + AE + HNA FD+GF++ E +++N+       
Sbjct: 66  HGISDEFLQDKPVFADIADEFIEFI--RGAELVIHNAPFDIGFMDYEFRKLNRGIPPTAE 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +AR+  P  RN+L++LC RY I  S R+ HGALLD+ +LSDVY+ M  G +
Sbjct: 124 FCTITDSLVLARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQTLGKN--- 234
            + F  ++      +        I  ++R          + EE+ EH+  +  + K    
Sbjct: 184 SLAFSMESESSNTEQANA-----IQRIERPVSGLKVLYASDEEVAEHEARLDIVDKKGGK 238

Query: 235 -AIWDR 239
             +W +
Sbjct: 239 PCLWRQ 244


>gi|57239226|ref|YP_180362.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161305|emb|CAH58228.1| DNA polymerase III, epsilon subunit [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 242

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 94/239 (39%), Positives = 141/239 (58%), Gaps = 9/239 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   N +R+IV D ETTGLD+   DRIIE+G +EL+D   T + F  ++ P  R     A
Sbjct: 1   MSYYNGIREIVLDTETTGLDADGGDRIIEMGCIELIDRVFTGKVFHEYINPE-RDIPYYA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGIT + LKDKP FS I  +F DF    N+  + HNA FD+ FI  EL +I K    
Sbjct: 60  TKIHGITVDMLKDKPKFSEIADKFLDFIG--NSVLVIHNAVFDIKFIKMELDKIQKSYNS 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +++DTL +AR+K P   + L++LCKR+ I++  R  HGALLD+ LL  VY+++M GG 
Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCKRFNISLQDRKFHGALLDATLLGKVYVQLM-GGL 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           Q +  F+ N   F   +     + S ++   P   ++++EE+ +H   ++ + KN IW+
Sbjct: 177 QRSLNFQDNSSMFQSSDYSHDVSRSYIE---PRLYKVSEEEIVKHKMLLEKI-KNPIWN 231


>gi|145631632|ref|ZP_01787397.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
 gi|144982766|gb|EDJ90295.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
          Length = 256

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 97/258 (37%), Positives = 145/258 (56%), Gaps = 19/258 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RSV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
            P+A+K+HGITDE L DKP F  I  +F D+ N   AE + HNA FDVGF++ E +++  
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKEIAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLDL 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           N    D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175

Query: 174 MMVGGSQINFGFKTNE-DRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQT 230
           M  G + +    ++ E D     ++KT   I             + T +EL  H + ++ 
Sbjct: 176 MTGGQTNLFDEEESVESDVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKM 235

Query: 231 LGK----NAIWDRYISSN 244
           + K    N +WD+   +N
Sbjct: 236 MNKKSGNNCLWDKRFGNN 253


>gi|153840553|ref|ZP_01993220.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149745784|gb|EDM56914.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 229

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 94/238 (39%), Positives = 142/238 (59%), Gaps = 20/238 (8%)

Query: 9   KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +V D ETTG++ +        RIIEIGAVE+++   T R F V++ P+ R+  PEA+++
Sbjct: 1   IVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPEAIQV 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLD 119
           HGITDEFL DKP ++SI  EF DF   + AE +AHNA FD GF++ E ++++       D
Sbjct: 60  HGITDEFLVDKPEYASIHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLDPIIGKTDD 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G +
Sbjct: 118 YCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQT 177

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            + F          K+E        +  R      R T +EL+ H K ++ +  + IW
Sbjct: 178 SLEF-------NANKQEGGVETIRRIEGRKALKVLRATADELEAHQKRLELVN-DCIW 227


>gi|37524935|ref|NP_928279.1| DNA polymerase III subunit epsilon [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784361|emb|CAE13238.1| DNA polymerase III epsilon chain [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 248

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 93/250 (37%), Positives = 139/250 (55%), Gaps = 21/250 (8%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R++V D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA ++
Sbjct: 7   RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIQPD-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL+DKP F+ I  EF +F   + AE I HNA FD+GFI+ E  ++N+D      
Sbjct: 66  HGISDEFLQDKPLFADIADEFIEFI--RGAELIIHNAPFDIGFIDYEFGKLNRDIPPTAD 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR   P  RN+L++LC RY I  S R+ HGALLD+ +LSDVY+ M  G +
Sbjct: 124 FCKITDSLQLARGLFPGKRNNLDALCDRYDIDNSKRTLHGALLDAEILSDVYLIMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTL---GKN 234
            + F  +             V  I  + R +        T EEL  H+  +  +   G +
Sbjct: 184 SLAFSME-----GEIASGANVSEIQRITRPQMALKVIYATDEELAAHESRLDLVEKKGGS 238

Query: 235 AIWDRYISSN 244
            +W   +  +
Sbjct: 239 CLWRMNLGQS 248


>gi|161615575|ref|YP_001589540.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161364939|gb|ABX68707.1| hypothetical protein SPAB_03350 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 246

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 138/242 (57%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP F+ +  EF D+   ++AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYI--RDAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +    R  ++ + T+  I + +  +      ++EEL  H+  +   Q  G + +
Sbjct: 187 SMTFAMEGETQR--QQGEATIQRI-VRQASRLRVVFASEEELAAHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|260583276|ref|ZP_05851052.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127]
 gi|260093683|gb|EEW77595.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127]
          Length = 256

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 91/258 (35%), Positives = 146/258 (56%), Gaps = 19/258 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    D   + DTL +AR+ +P  R++L++LC+R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRSNLDALCERLGIDNSKRTLHGALLDAEILADVYLM 175

Query: 174 MMVGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           M  G + +       ++   R  +E+       ++         + T +EL  H + ++ 
Sbjct: 176 MTGGQTNLFDEEESVESEVIRVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKM 235

Query: 231 LGK----NAIWDRYISSN 244
           + K    N +W++   +N
Sbjct: 236 MNKKSGNNCLWEKRFGNN 253


>gi|288549963|ref|ZP_05968783.2| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288316782|gb|EFC55720.1| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 246

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF ++   + AE + HNA FD+GF++ E  ++N+D    + 
Sbjct: 69  HGIADEFLLDKPTFADVADEFLEYI--KGAELVIHNASFDIGFMDYEFSKLNRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++ARR  P  RN L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKVTDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLTMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F     E+   + + +      + +  +      + EEL +H+  +   Q  G + +
Sbjct: 187 SMKFSM---ENESQQSQGEAGIQRLVRQASRLRVVHASDEELLKHESRLDLVQKKGGSCM 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|238799153|ref|ZP_04642606.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969]
 gi|238716994|gb|EEQ08857.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969]
          Length = 259

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 89/249 (35%), Positives = 139/249 (55%), Gaps = 17/249 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 12  RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL DKP+F+ I  EF +F   + AE I HNA FD+GF++ E + + +D      
Sbjct: 71  HGISDEFLADKPTFAEITPEFLEFI--RGAELIIHNAAFDIGFMDYEFRMLQQDIPKTET 128

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G +
Sbjct: 129 FCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            ++F  +   D+   +    +  I+             ++EL  H+  +  +   G + +
Sbjct: 189 SLSFSME--GDQSQSDSSDDIQRITR-PASGLKIIYAAEDELAAHESRLDLVMKKGGSCL 245

Query: 237 WDRYISSNQ 245
           W   + S  
Sbjct: 246 WRMPLESED 254


>gi|227112969|ref|ZP_03826625.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 245

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 140/242 (57%), Gaps = 16/242 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNMLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL DKP+++ I  +F DF   + AE + HNA FD+GF++ E + +N+D      
Sbjct: 66  HGISDEFLADKPTYADIVDDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRDLPKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            + F  +  E +   E  +T+  I   +    +     + EL  H++ +  +   G + +
Sbjct: 184 SLTFSME-GETQQKSENTETIQRIVRPQSALTVLY-ADEAELLAHEQRLDLIAKKGGSCL 241

Query: 237 WD 238
           W 
Sbjct: 242 WR 243


>gi|261346344|ref|ZP_05973988.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM
           4541]
 gi|282565658|gb|EFB71193.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM
           4541]
          Length = 253

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 89/246 (36%), Positives = 138/246 (56%), Gaps = 22/246 (8%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL+DKP F+ I  EF +F   + AE I HNA FD+GF++ E +++N+       
Sbjct: 66  HGISDEFLQDKPVFAEIADEFIEFI--RGAELIIHNAPFDIGFMDYEFRKLNRGIPPTAE 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +AR+  P  RN+L++LC RY I  S R+ HGALLD+ +LSDVY+ M  G +
Sbjct: 124 FCSITDSLVLARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQTLGKN--- 234
            + F   ++     +  +     I  ++R          + +E+ EH+  +  + K    
Sbjct: 184 SLAFSMDSDSKNIQQANE-----IQRIQRPASGLKVLYASDQEIAEHEARLDIVDKKGGK 238

Query: 235 -AIWDR 239
             +W +
Sbjct: 239 PCLWRK 244


>gi|56460794|ref|YP_156075.1| DNA polymerase III, epsilon subunit [Idiomarina loihiensis L2TR]
 gi|56179804|gb|AAV82526.1| DNA polymerase III, epsilon subunit [Idiomarina loihiensis L2TR]
          Length = 235

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/238 (36%), Positives = 134/238 (56%), Gaps = 13/238 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTG+D  K  RIIEIG VEL++   T   F V++ P  R    EA+++HGI
Sbjct: 1   MRQVVLDTETTGIDPAKGHRIIEIGCVELINRKLTGNHFHVYINPE-RVVEQEAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           T++FL DKP F+ +  +F +F   + ++ + HNA FDVGF++AE  RI        D   
Sbjct: 60  TNDFLTDKPVFAQVVQDFIEFI--KGSQLVIHNAPFDVGFMDAEFSRIRPAVGLTNDFCS 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR   P  RN L++LC+ Y +  S R  HGALLD+ +L+DVY+ M  G + +N
Sbjct: 118 VLDTLQLAREMRPGQRNSLDALCRAYDVDNSARELHGALLDAEILADVYLMMTGGQTALN 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIW 237
                 +++   ++   V +  +  R      R T +E   H + +  +   G + +W
Sbjct: 178 LASHGKDNQGGSQK---VEHQRITNRPALKVLRATADEEALHQERLARVKEEGGHCLW 232


>gi|85058570|ref|YP_454272.1| DNA polymerase III subunit epsilon [Sodalis glossinidius str.
           'morsitans']
 gi|84779090|dbj|BAE73867.1| DNA polymerase III epsilon subunit [Sodalis glossinidius str.
           'morsitans']
          Length = 252

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 85/248 (34%), Positives = 138/248 (55%), Gaps = 15/248 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           +  +  R+IV D ETTG++      +  RIIEIGAVE+++   T R F V+L P+ R   
Sbjct: 1   MSTDITRQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHFHVYLKPD-RLVD 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK- 115
           PEA  +HGI+DEFL DKP+F+ +  EF  F   +  E + HNA FD+GF++ E   +N+ 
Sbjct: 60  PEAFNVHGISDEFLADKPTFADVADEFLHFI--RGGELVIHNAPFDIGFMDYEFGMLNRG 117

Query: 116 --DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                   ++ D+L +AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DV++ 
Sbjct: 118 IAKTDTFCKVTDSLLLARKMFPGKRNSLDALCDRYLIDNSKRTLHGALLDAEILADVFLL 177

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QT 230
           M  G + + F  +  +++    E   +  +  ++         + EE+  H++ +   Q 
Sbjct: 178 MTGGQTAMRFAMEGEQEQRDVGETVQIQRVQRVQ-TSLKVIYASDEEVVAHEQRLDLVQK 236

Query: 231 LGKNAIWD 238
            G + +W 
Sbjct: 237 KGGSCVWR 244


>gi|58617240|ref|YP_196439.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Gardel]
 gi|58416852|emb|CAI27965.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Gardel]
          Length = 242

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 94/239 (39%), Positives = 141/239 (58%), Gaps = 9/239 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   N +R+IV D ETTGLD+   DRIIE+G +EL+D   T + F  ++ P  R     A
Sbjct: 1   MSYYNGIREIVLDTETTGLDADGGDRIIEMGCIELIDRVFTGKVFHEYINPE-RDIPYYA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGIT + LKDKP FS I  +F DF    N+  + HNA FD+ FI  EL +I K    
Sbjct: 60  TKIHGITVDMLKDKPKFSEIADKFLDFIG--NSVLVIHNAVFDIKFIKMELDKIQKSYNS 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +++DTL +AR+K P   + L++LCKR+ I++  R  HGALLD+ LL  VY+++M GG 
Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCKRFNISLQDRKFHGALLDATLLGKVYVQLM-GGL 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           Q +  F+ N   F   +     + S ++   P   ++++EE+ +H   ++ + KN IW+
Sbjct: 177 QRSLNFQDNSGMFQSSDYSHDVSRSYIE---PRLYKVSEEEIVKHRMLLEKI-KNPIWN 231


>gi|104782586|ref|YP_609084.1| DNA polymerase III subunit epsilon [Pseudomonas entomophila L48]
 gi|95111573|emb|CAK16293.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudomonas entomophila L48]
          Length = 251

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/240 (37%), Positives = 129/240 (53%), Gaps = 9/240 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++   R ++ D ETTG+      RIIEIG VE++    T R F V+L P+ R++   A
Sbjct: 1   MEQQQDQRLVILDTETTGMPVGDGHRIIEIGCVEVMGRRLTGRHFHVYLQPD-RESDEGA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
           + +HGITD FL  KP F  +  EF++F   + A  + HNA FDVGFIN E   + +    
Sbjct: 60  IGVHGITDAFLVGKPRFGDVAQEFFEFI--EGATLVIHNAAFDVGFINNEFALLGQHDRA 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D      I+DTL +AR +HP  RN L++LCKRYGI  S R  HGALLDS LL+DVY+ M 
Sbjct: 118 DISQHCSILDTLMMARSRHPGQRNSLDALCKRYGIDNSGRELHGALLDSELLADVYLAMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            G + ++      +    +    +     +  R         +EEL  H + +  + K+A
Sbjct: 178 GGQTSLSLAGDGAQSEDGQGGTGSEIR-RISGRAAGRVIMANEEELQAHAERLAAIAKSA 236


>gi|33591629|ref|NP_879273.1| DNA polymerase III subunit epsilon [Bordetella pertussis Tohama I]
 gi|33598340|ref|NP_885983.1| DNA polymerase III subunit epsilon [Bordetella parapertussis 12822]
 gi|33603250|ref|NP_890810.1| DNA polymerase III subunit epsilon [Bordetella bronchiseptica RB50]
 gi|33566898|emb|CAE39114.1| DNA polymerase III, epsilon chain [Bordetella parapertussis]
 gi|33571272|emb|CAE44737.1| DNA polymerase III, epsilon chain [Bordetella pertussis Tohama I]
 gi|33577374|emb|CAE34639.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica RB50]
 gi|332381049|gb|AEE65896.1| DNA polymerase III subunit epsilon [Bordetella pertussis CS]
          Length = 244

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 99/239 (41%), Positives = 134/239 (56%), Gaps = 15/239 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTGLD  +  RI+EIG VE+++   T     ++L P+ R + PEAL +HG+
Sbjct: 1   MRQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNPD-RDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ +  +F  F    +AE IAHNA FDV F NAELQRI +DPL      I
Sbjct: 60  TTEFLADKPRFAEVAEQFLAFIA--DAELIAHNAAFDVKFFNAELQRIGRDPLNTHCENI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +D+L  AR  HP  RN L++LC RYGI+ +HR+ HGALLDS LL++V++ M  G   +  
Sbjct: 118 VDSLLHARSLHPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
                             + S+L          ++ EL EH   +Q L    G    W 
Sbjct: 178 DVDDQGANANGALVLGKFDASVLT-----VLAASEAELAEHAAYLQALDKAVGGACAWR 231


>gi|327392834|dbj|BAK10256.1| DNA polymerase III epsilon subunit DnaQ [Pantoea ananatis AJ13355]
          Length = 243

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/249 (36%), Positives = 141/249 (56%), Gaps = 18/249 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F ++L P+ R  
Sbjct: 1   MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLV 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI DEFL DKP+FS I  EF D+   + AE + HNA FD+GF++ E  ++ +
Sbjct: 59  DPEAFGVHGIADEFLLDKPTFSDIADEFLDYI--RGAELVIHNASFDIGFMDYEFGKLQR 116

Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                    +I D+L++ARR  P  RN L++LC RY I  S R+ HGALLD+ +L++V +
Sbjct: 117 GIEKTETFCKITDSLAMARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAEILAEVLL 176

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231
            M  G  Q +  F + E+R  +++ + +  I+            + EE+++H+  +  + 
Sbjct: 177 TMTGG--QTSLSFSSEEERARQQQSEGIQRIAR-PNSGLRVVTASDEEVNQHESRLDLIM 233

Query: 232 --GKNAIWD 238
             G + +W 
Sbjct: 234 KKGGSCLWR 242


>gi|68248745|ref|YP_247857.1| DNA polymerase III subunit epsilon [Haemophilus influenzae
           86-028NP]
 gi|68056944|gb|AAX87197.1| DNA polymerase III, epsilon chain [Haemophilus influenzae 86-028NP]
          Length = 255

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/257 (35%), Positives = 143/257 (55%), Gaps = 18/257 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    D   + DTL +AR+ +   RN+L++LC+R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 NVKTDDICLVTDTLQMARQMYLGKRNNLDALCERLGIDNSKRTLHGALLDAEILADVYLM 175

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTL 231
           M  G + +        +     ++KT   I             + T +EL  H + ++ +
Sbjct: 176 MTGGQTNLFDEESVESEVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMM 235

Query: 232 GK----NAIWDRYISSN 244
            K    N +W++   +N
Sbjct: 236 NKKSGNNCLWEKRFGNN 252


>gi|290476066|ref|YP_003468963.1| DNA polymerase III subunit epsilon [Xenorhabdus bovienii SS-2004]
 gi|289175396|emb|CBJ82199.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Xenorhabdus bovienii SS-2004]
          Length = 249

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/242 (37%), Positives = 139/242 (57%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F +++ P  R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRHFHLYIKPE-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL+DKP+F+ I  EF +F   + AE I HNA FD+GF++ E +++N+D      
Sbjct: 66  HGISDEFLQDKPTFADIADEFIEFI--RGAELIIHNATFDIGFMDYEFRKLNRDIPPTAD 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +AR+  P  RN+LN+LC RY I  S R+ HGALLD+ +LSDVY+ M  G +
Sbjct: 124 FCTITDSLVLARQLFPGKRNNLNALCDRYQIDNSKRTLHGALLDAEILSDVYLTMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            + F  +   +     +   +  I+  +         + EEL +H+  +  +   G + +
Sbjct: 184 SLTFSME--GEISGGAQMAEIQKITRPQ-TGLKVIYASDEELLQHESRLDLVEKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|238755084|ref|ZP_04616431.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473]
 gi|238706644|gb|EEP99014.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473]
          Length = 254

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/251 (36%), Positives = 141/251 (56%), Gaps = 22/251 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI     R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R  
Sbjct: 1   MIPT-PTRQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYIKPD-RLV 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI+DEFL DKP+F+ I  EF +F   + AE + HNA FD+GF+  E + + +
Sbjct: 59  DPEAYGVHGISDEFLLDKPTFADIAPEFIEFI--RGAELVIHNATFDIGFMYYEFRMLQQ 116

Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              +      I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +LS+VY+
Sbjct: 117 AIPNTDTFCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILSEVYL 176

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTI-- 228
            M  G + ++F  + ++++       +  +I  + R            EELD H + +  
Sbjct: 177 AMTGGQTSLSFSMEGDQNQ-----SDSAADIQRIVRPTSGLTIIYANDEELDAHHQRLDL 231

Query: 229 -QTLGKNAIWD 238
            Q  G + +W 
Sbjct: 232 VQKKGGSCLWR 242


>gi|254448791|ref|ZP_05062248.1| DNA polymerase III, epsilon subunit [gamma proteobacterium
           HTCC5015]
 gi|198261632|gb|EDY85920.1| DNA polymerase III, epsilon subunit [gamma proteobacterium
           HTCC5015]
          Length = 239

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 99/242 (40%), Positives = 144/242 (59%), Gaps = 15/242 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTGLD K   RIIEIG VEL +   T     ++L P+ R+    A+++H I
Sbjct: 1   MRQVVLDTETTGLDPKQGHRIIEIGCVELENRRLTGNKLHMYLQPD-REIDDGAIEVHQI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           T+EFL DKP F  +  EF DF   + +E + HNA FDVGFI++EL  ++++     D   
Sbjct: 60  TNEFLADKPRFGDVVDEFLDFV--KGSELVIHNAAFDVGFIDSELNLLDRNLGQTKDYCG 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL++AR+ HP  RNDL+SLCKRY I  SHR+ HGALLD+ +L+DVY+ M  G  Q++
Sbjct: 118 VLDTLAMARKMHPGKRNDLDSLCKRYDINNSHRTLHGALLDAEILADVYLMMTGG--QVS 175

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-----AIW 237
            GF   + +    E+     IS  +    + T  + EE + H+K +  L         +W
Sbjct: 176 LGFDAKQKQEADAEQGGAHRISQDRAPLQVIT-ASPEEQERHEKLLANLRGKDGDQPCLW 234

Query: 238 DR 239
           D+
Sbjct: 235 DQ 236


>gi|117920808|ref|YP_870000.1| DNA polymerase III subunit epsilon [Shewanella sp. ANA-3]
 gi|117613140|gb|ABK48594.1| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3]
          Length = 242

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 87/248 (35%), Positives = 131/248 (52%), Gaps = 20/248 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++          RIIEIG VE+++   T R F  ++ P G+  
Sbjct: 3   IISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QR 112
            PEA+ +HGITDE + ++P F  I  EF DF +   AE +AHNA FDV F++ E    Q 
Sbjct: 62  DPEAIAVHGITDERVANEPRFHQIAQEFIDFIS--GAEIVAHNANFDVSFMDHEFSLLQP 119

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +     +   I+D+L IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+
Sbjct: 120 LGPKTSEICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRLYHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G ++ N            +E   +        +       + +EL  H+K +  + 
Sbjct: 180 AMTGGQTKFNLSNDEV-----GQEAGGIQRFDPASLN-LKVISASADELVMHEKRLDLVA 233

Query: 233 K--NAIWD 238
           K    +W 
Sbjct: 234 KSGKCLWR 241


>gi|144899676|emb|CAM76540.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 228

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/234 (39%), Positives = 136/234 (58%), Gaps = 10/234 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D     RI+EIG VEL ++  T + +  ++ P  R    EA K+HG+
Sbjct: 1   MREIVLDTETTGFDPLTGHRIVEIGCVELFNHLPTGKVYHQYVNPE-RDMPEEAFKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +++FL DKP F+ I ++F DF    +A  + HNA+FD+ FINAEL R+   PL  SR ID
Sbjct: 60  SEQFLSDKPVFAEIVADFMDFIG--DAILVIHNAEFDMRFINAELSRLGFQPLPMSRSID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+++AR+K P ++ +L++LC+R+ I  +HRS HGALLDS LL++VY++++ GG Q     
Sbjct: 118 TVAMARKKFPGAQANLDALCRRFEIDNTHRSFHGALLDSELLAEVYLQLI-GGRQPGLEL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                         +  +    R          EEL+ H   +  L K A+W R
Sbjct: 177 GLLGGNGKGGGGPVLERVKREPRPHAALP----EELEAHAAFVGKL-KKALWLR 225


>gi|241761459|ref|ZP_04759547.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374366|gb|EER63863.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 234

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 132/239 (55%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGL     DR++EIG VEL++  +T  +F  +  P  R     A  +HG+
Sbjct: 1   MREIVFDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNPE-RPMDAVAESIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D FL DKP F+    E   F     +  +AHNA FD GF+N EL +     +  +R++D
Sbjct: 60  SDAFLADKPLFADKAQELLSFIKL--SPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR KHP +++ L++LC RYGI  SHR KHGALLD+ LL+ +Y+++  GG QI    
Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVELT-GGRQIGMAL 176

Query: 186 KTNEDRFFKEEK-----KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             N  +             +P    +KR +P     + +EL  H   I  +  N +W R
Sbjct: 177 DDNNGQSDGRLSVPNTVSGLPRNKKVKR-QPRPHEASPQELLRHGAFIDKIS-NPVWRR 233


>gi|113868435|ref|YP_726924.1| DNA polymerase III subunit epsilon [Ralstonia eutropha H16]
 gi|113527211|emb|CAJ93556.1| DNA polymerase III epsilon subunit [Ralstonia eutropha H16]
          Length = 246

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 89/245 (36%), Positives = 127/245 (51%), Gaps = 15/245 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL +   DR+IEIG VEL++   T R    ++ P  R     A+ +HGI
Sbjct: 4   MRQIVLDTETTGLSAATGDRLIEIGCVELMNRRLTGRHLHFYVNPE-RDIDEGAIAVHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ + ++  +F   Q+AE I HNA FD+GF++ E Q +   P       +
Sbjct: 63  TVEFLADKPRFAEVVNDIREFI--QDAELIIHNAPFDLGFLDMEFQLLGLPPFRQHAGNV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  AR+  P  RN L++LC R GI+ +HR+ HGALLD+ LL++VY+ M  G   +  
Sbjct: 121 IDTLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRGQDSLVI 180

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWDR 239
               +               + L R      R T EE   H   ++ L    G   +W  
Sbjct: 181 DMHDS-----TAGHGGAVAAADLSRLALPVLRATDEEQQAHLALLKGLDKASGGKTVWQE 235

Query: 240 YISSN 244
             ++ 
Sbjct: 236 APAAE 240


>gi|88703294|ref|ZP_01101010.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71]
 gi|88702008|gb|EAQ99111.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71]
          Length = 240

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/240 (37%), Positives = 135/240 (56%), Gaps = 12/240 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S+  RIIEIG VE+ +   T R F  ++ P  R     A+++HGI
Sbjct: 1   MRQIVLDTETTGLEVSQGHRIIEIGCVEMENRQLTGRHFHRYINPE-RDIDAGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122
           T  FL DKP FS++  +F DF +   AE I HNA FD+GF+++EL R +   L       
Sbjct: 60  TATFLADKPVFSAVAKDFIDFVD--GAELIIHNAPFDIGFLDSELSRWDASALPLAQRCD 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I DTL +AR +HP  RN L++LC RYG+  S R  HGALLD+ +L+DVY+ M  G + + 
Sbjct: 118 ITDTLIMARSRHPGQRNSLDALCGRYGVDNSSRELHGALLDAEILADVYLTMTGGQTALA 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWDR 239
            G   ++++     +          R +    + + EEL  H+  + ++   G   +W +
Sbjct: 178 LGGNDDDNQGRARVRGL--RRLPADRVRLPVIQPSDEELAAHEGQLDSIAAAGAEPLWRQ 235


>gi|254240209|ref|ZP_04933531.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192]
 gi|126193587|gb|EAZ57650.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192]
          Length = 246

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/242 (37%), Positives = 132/242 (54%), Gaps = 12/242 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+      RIIEIG VEL     T R F V+L P+ R+    A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRHLTGRHFHVYLQPD-REVDEGAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121
           T+E+LKDKP F  + ++F++F   + A+ I HNA FD+GFIN E   + +    D  +  
Sbjct: 60  TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR +HP  RN+L++LCKRYG+  S R  HGALLD+ +L+DVY+ M  G + +
Sbjct: 118 SVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237
           +      E         +        R      R   EEL  H   +  + K+A    +W
Sbjct: 178 SLAGSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLW 237

Query: 238 DR 239
            +
Sbjct: 238 AQ 239


>gi|317047021|ref|YP_004114669.1| DNA polymerase III subunit epsilon [Pantoea sp. At-9b]
 gi|316948638|gb|ADU68113.1| DNA polymerase III, epsilon subunit [Pantoea sp. At-9b]
          Length = 243

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 85/249 (34%), Positives = 137/249 (55%), Gaps = 18/249 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F ++L P+ R  
Sbjct: 1   MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHIYLKPD-RLV 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI DEFL DKPSFS I  EF D+   + AE + HNA FD+GF++ E   + +
Sbjct: 59  DPEAFGVHGIADEFLADKPSFSDIADEFLDYI--RGAELVIHNASFDIGFMDYEFAMLKR 116

Query: 116 D---PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           D        ++ D+L++AR+  P  RN L++LC R  I  S R+ HGALLD+ +L++V++
Sbjct: 117 DIGKTDTFCQVTDSLAMARKMFPGKRNSLDALCSRLEIDNSKRTLHGALLDAEILAEVFL 176

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231
            +  G + + F  ++  ++  + + + +  I +           + EE   H+  +  + 
Sbjct: 177 TLTGGQTSLAFSMES--EQSNQVDGENIQRI-VRPASGLRVVSASDEECLAHESRLDLVM 233

Query: 232 --GKNAIWD 238
             G + +W 
Sbjct: 234 KKGGSCLWR 242


>gi|90414055|ref|ZP_01222038.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
 gi|90324850|gb|EAS41378.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
          Length = 246

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 89/250 (35%), Positives = 140/250 (56%), Gaps = 20/250 (8%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R IV D ETTG++      +   IIEIGAVE+++   T  +F V++ P+ R   
Sbjct: 5   MKATNQRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEIINRKLTGNSFHVYIKPD-RTIE 63

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114
            EA+ +HGITDEFL  KP +  +  EF +F   + AE +AHNA FDVGF++ E +++N  
Sbjct: 64  VEAIGVHGITDEFLIGKPVYKEVHDEFLEFI--KGAELVAHNAPFDVGFMDYEFRKLNPN 121

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 122 IGKTEDFCKVTDTLAMAKKIFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLL 181

Query: 174 MMVGGSQINFGFKTN--EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           M  G + +    +    +     E K+  P   LLK         + +E++ H+  +  +
Sbjct: 182 MTGGQTSLALSAEREDRDAGTGSEIKRIAPGRKLLK-----VLHASADEIEAHESRLDII 236

Query: 232 GKNA--IWDR 239
            K    +W +
Sbjct: 237 SKKGDVMWRQ 246


>gi|24374102|ref|NP_718145.1| DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1]
 gi|24348589|gb|AAN55589.1|AE015697_11 DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1]
          Length = 242

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 89/248 (35%), Positives = 135/248 (54%), Gaps = 20/248 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++          RIIEIG VE+++   T R +  ++ P G+  
Sbjct: 3   IISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QR 112
            PEA+ +HGITDE + ++P F  I  EF DF +   AE +AHNA FDV F++ E    Q 
Sbjct: 62  DPEAIAVHGITDERVANEPRFHQIAQEFIDFIS--GAEIVAHNANFDVSFMDHEFSLLQP 119

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +     D   I+D+L IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+
Sbjct: 120 LGPKTRDICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G ++ N    +NE+    +E   +        +       + +EL  H+K +  + 
Sbjct: 180 SMTGGQTKFNL---SNEE--VGQEGGGIQRFDPTSLN-LKVICASADELVMHEKRLDLVA 233

Query: 233 K--NAIWD 238
           K    +W 
Sbjct: 234 KSGKCLWR 241


>gi|254429095|ref|ZP_05042802.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881]
 gi|196195264|gb|EDX90223.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881]
          Length = 246

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/232 (35%), Positives = 130/232 (56%), Gaps = 8/232 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTGL+     R+IEIG VE+ +   T     ++L P  R+    AL +HGI
Sbjct: 1   MRQVVLDTETTGLEPNDGHRVIEIGCVEMENRRLTGNNLHLYLNPE-REIDAGALAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           + EFL DKP+F  +  EF  F +   AE + HNA FDVGF+N EL+R+            
Sbjct: 60  STEFLADKPTFDKVVDEFLAFVD--GAELVIHNAPFDVGFLNHELRRLGARYGTIEQRCG 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR+KHP  +N+L++LC+RY +   HR  HGALLD+ +L+DVY+ M  G ++++
Sbjct: 118 VLDTLVMARQKHPGQKNNLDALCRRYFVENGHRELHGALLDAEILADVYLAMTGGQTRLS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
            G     ++      + +  +S   R      R ++ E+  H+  +  +   
Sbjct: 178 LGGNDGSEQGGDATAEAIRRLS-ADRPALAVVRPSESEMQRHNDKLTAIAGK 228


>gi|260753374|ref|YP_003226267.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552737|gb|ACV75683.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 234

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 132/239 (55%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGL     DR++EIG VEL++  +T  +F  +  P  R     A  +HG+
Sbjct: 1   MREIVFDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNPQ-RPMDAVAESIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D FL DKP F+    E   F     +  +AHNA FD GF+N EL +     +  +R++D
Sbjct: 60  SDAFLADKPLFADKAQELLSFIKL--SPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR KHP +++ L++LC RYGI  SHR KHGALLD+ LL+ +Y+++  GG QI    
Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVELT-GGRQIGMAL 176

Query: 186 KTNEDRFFKEEK-----KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             N  +             +P    +KR +P     + +EL  H   I  +  N +W R
Sbjct: 177 DDNNGQSDGRLSVPNTVSGLPRNKKVKR-QPRPHEASPQELLRHGAFIDKIS-NPVWRR 233


>gi|307545281|ref|YP_003897760.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
 gi|307217305|emb|CBV42575.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581]
          Length = 255

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 90/245 (36%), Positives = 131/245 (53%), Gaps = 16/245 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTG+D +   R+IEIGAVE+++   T  T+  ++ P  R    EA+++HGI
Sbjct: 1   MRQIILDTETTGIDPREGHRLIEIGAVEMVNRRLTGNTYHQYINPE-RDIEAEAVEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--------KDP 117
           T+E + D+P F+ +   FW F   + AE + HNA FDVGFI+ E  R+N           
Sbjct: 60  TNEKVADEPVFAEVADAFWAFI--KGAELVIHNAPFDVGFIDHEFARLNEARGGPVLGPV 117

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +  RI+DTL +AR KHP  RN+L++LCKRY I   HR  HGALLD+ +L+DVY+ M  G
Sbjct: 118 AEHCRILDTLQLARDKHPGQRNNLDALCKRYEIQNGHRVLHGALLDAEILADVYLAMTGG 177

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE-ELDEHDKTIQTL---GK 233
            + ++      +D    +    +    L      L  R   E E   H   +  +     
Sbjct: 178 QTALSLDASAGDDTEQADNGGGLRIRRLSLSPGQLRVRQPDEAEWQAHRDKLAGIREASG 237

Query: 234 NAIWD 238
              WD
Sbjct: 238 ECRWD 242


>gi|307257347|ref|ZP_07539117.1| hypothetical protein appser10_13450 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864197|gb|EFM96110.1| hypothetical protein appser10_13450 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 248

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 88/241 (36%), Positives = 134/241 (55%), Gaps = 16/241 (6%)

Query: 11  VFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+   EA+K+HGI
Sbjct: 2   VLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVDEEAIKVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122
           T+EFL+DKP F+ +  EF +F   + AE I HNA FDV F++ E   +   P    +   
Sbjct: 61  TNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCS 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++ MM GG    
Sbjct: 119 VTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLAL 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
            G +             +  I+  +    +   +++EE   H++ ++ + K    N IW 
Sbjct: 178 LGEEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWM 237

Query: 239 R 239
           R
Sbjct: 238 R 238


>gi|295096912|emb|CBK86002.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 246

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 85/242 (35%), Positives = 138/242 (57%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL +KP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++N+D    + 
Sbjct: 69  HGIADEFLLNKPTFADVADEFLDYI--RGAELVIHNASFDIGFMDYEFSKLNRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLTMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +    +    ++  +  I + + ++      + EEL  H+  +   Q  G + +
Sbjct: 187 SMKFSMENESQQ--TRDEGGIQRI-VRQANRLRVVLASDEELMNHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|157369157|ref|YP_001477146.1| DNA polymerase III subunit epsilon [Serratia proteamaculans 568]
 gi|157320921|gb|ABV40018.1| DNA polymerase III, epsilon subunit [Serratia proteamaculans 568]
          Length = 246

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/242 (35%), Positives = 133/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGA+E+++   T R + V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGALEVINRRPTGRHYHVYIKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL DKP+F+ I  EF DF   +  E + HNA FD+GF++ E + + +       
Sbjct: 66  HGISDEFLADKPTFAQIADEFIDFI--RGGELVIHNAAFDIGFMDHEFRMLQQGIPKTDT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M  G  
Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAMTGG-- 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
           Q +  F+   D       + +  I +           + EE+  H+  +  +   G + +
Sbjct: 182 QTSMAFQMEGDTQNSNSTQDIQRI-VRPATTMKVVYASDEEVVAHEARLDLVAKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|307132179|ref|YP_003884195.1| DNA polymerase III subunit epsilon [Dickeya dadantii 3937]
 gi|306529708|gb|ADM99638.1| DNA polymerase III epsilon subunit [Dickeya dadantii 3937]
          Length = 244

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/242 (35%), Positives = 136/242 (56%), Gaps = 16/242 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYLRPD-RLVDPEAYNV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL DKP++  +  +F DF   + AE + HNA FD+GF++ E + + +D      
Sbjct: 66  HGISDEFLADKPTYGDVVDDFLDFI--RGAELVIHNATFDIGFMDYEFRLLKRDIPKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCTITDSLQMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            + F  + +  +   + +              L+   + EEL  H++ +  +   G + +
Sbjct: 184 SLAFSMEGDTQQQTAQTETIQRIARPASALAVLY--ASDEELAAHEQRLDLIMKKGGSCL 241

Query: 237 WD 238
           W 
Sbjct: 242 WR 243


>gi|238893208|ref|YP_002917942.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238545524|dbj|BAH61875.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 246

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 133/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++N+       
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNASFDIGFMDYEFSKLNRGIGKTET 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +    +   E         +    +      + EEL  H+  +   Q  G + +
Sbjct: 187 SMAFSMEGESQQQAGEMGIQR---VVRAGSQLRVVYASDEELANHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|148825595|ref|YP_001290348.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE]
 gi|229847255|ref|ZP_04467358.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1]
 gi|148715755|gb|ABQ97965.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE]
 gi|229809798|gb|EEP45521.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1]
          Length = 256

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 94/258 (36%), Positives = 145/258 (56%), Gaps = 19/258 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDLAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175

Query: 174 MMVGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           M  G + +       ++   R  +E+       ++         + T +EL  H + ++ 
Sbjct: 176 MTGGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKM 235

Query: 231 LGK----NAIWDRYISSN 244
           L K    N +WD+   +N
Sbjct: 236 LNKKSGNNCLWDKRFGNN 253


>gi|94502173|ref|ZP_01308671.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65]
 gi|94425698|gb|EAT10708.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65]
          Length = 237

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 90/231 (38%), Positives = 135/231 (58%), Gaps = 7/231 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR++V D ETTG+     RIIEIG VEL+    T R +  ++ P  R+  PEA+++HGIT
Sbjct: 1   MRQVVLDTETTGI-GDGHRIIEIGCVELVGRKLTGRHYHQYINPQ-REVDPEAMEVHGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRII 124
           DEFL DKP F+ + +EF DF N   AE + HNA FDVGF++ E  +++  P   +   ++
Sbjct: 59  DEFLADKPVFAQVANEFLDFIN--GAELVIHNAPFDVGFMDMEFAKLSNFPKTAEVCGVL 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR+ +P  RN L++LC+R GI  SHR  HGALLDS +L+DVY+ M  G + ++  
Sbjct: 117 DTLTLARKMYPGQRNSLDALCRRLGIDNSHRELHGALLDSEILADVYLLMTGGQTALSLA 176

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            +        E    V  +   +        +T +E  +H + ++ L   A
Sbjct: 177 SEDASTEGSHELSVKV-LVDQSQVANLPSWGVTDDEARQHQEYLELLATKA 226


>gi|186475632|ref|YP_001857102.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815]
 gi|184192091|gb|ACC70056.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815]
          Length = 249

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 92/248 (37%), Positives = 137/248 (55%), Gaps = 18/248 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+++  DRIIEIG VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQIILDTETTGLNARTGDRIIEIGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL DKP F+ I     DF   Q+AE I HNA FD+GF++AE   +   P       +
Sbjct: 60  TTEFLSDKPKFAEIADTLRDFI--QDAELIIHNAPFDIGFLDAEFALLGLPPFSQYCGEV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A+   P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +  
Sbjct: 118 IDTLVRAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI 177

Query: 184 GF--KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
               +T  D     ++  +  + L      +    T +EL EH+  +  L K+    ++W
Sbjct: 178 DMLGETAADDAGGAKRVMLDTLEL------IVLAATDDELAEHEALLDGLDKSLKGTSVW 231

Query: 238 DRYISSNQ 245
             + ++  
Sbjct: 232 RTHPTTED 239


>gi|254514367|ref|ZP_05126428.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR5-3]
 gi|219676610|gb|EED32975.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR5-3]
          Length = 240

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 91/239 (38%), Positives = 132/239 (55%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S+  RIIEIG VEL +   T R F  ++ P  R     A+++HGI
Sbjct: 1   MRQIVLDTETTGLEVSQGHRIIEIGCVELQNRLLTGRHFHRYINPE-RDIDAGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122
           T  FL DKP FS++  +F DF +   AE I HNA FD+GF+++EL RI+   L       
Sbjct: 60  TATFLADKPVFSAVAKDFVDFVD--GAELIIHNAPFDIGFLDSELSRIDPAALPLAQRCE 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I DTL +AR +HP  RN L++LC+RY +  S R  HGALLD+ +L+DVY+ M  G + + 
Sbjct: 118 ITDTLVMARSRHPGQRNSLDALCQRYAVDNSSRDLHGALLDAEILADVYLTMTGGQTALA 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238
            G    + +     +  +       R +      +  EL  H+  + ++   G   +W 
Sbjct: 178 LGGDDGDSQGRTRPRGLIRL--PENRPRLPVIEPSDSELAAHEAQLDSIAAAGTEPLWR 234


>gi|255019824|ref|ZP_05291900.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
 gi|254970753|gb|EET28239.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
          Length = 243

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 97/246 (39%), Positives = 143/246 (58%), Gaps = 11/246 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTG+D +   R+IEIGAVEL+D   T   +Q +L P GR + PEAL++HGI
Sbjct: 1   MRQVVLDTETTGIDPRQGHRVIEIGAVELVDREITEGRYQQYLNP-GRSSDPEALRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL D+P F+ I  +F  F    +AE I HNA FD+ F+NAEL+R+ +  L  + + D
Sbjct: 60  RDDFLADQPDFADIVEDFLAFLG--DAELIIHNAPFDLAFLNAELERVGRPAL-QNPVRD 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG--GSQINF 183
           TL  ARR+HP  +NDL++LC+RYG+  S R +HGALLD  +L++VY++M  G  G ++  
Sbjct: 117 TLVEARRRHPGQKNDLDALCRRYGVDNSRRQQHGALLDCEILAEVYLRMSGGQLGMRLAA 176

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRD----KPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             +       +E +   P  +  +           R    EL  H+  ++ LG  A+W  
Sbjct: 177 DREAQGPSVAEEGQAGAPFQAHAQAADRRRPLRLRRADAAELAAHEAYLRGLGGKALWRE 236

Query: 240 YISSNQ 245
                Q
Sbjct: 237 ESPGEQ 242


>gi|311280820|ref|YP_003943051.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae SCF1]
 gi|308750015|gb|ADO49767.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae SCF1]
          Length = 246

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 85/242 (35%), Positives = 133/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFNV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF ++   + AE + HNA FD+GF++ E  ++N+     + 
Sbjct: 69  HGIADEFLLDKPTFADVCDEFLEYI--RGAELVIHNASFDIGFMDYEFSKLNRGIAKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F     E    + + +      +    K      + EEL  H+  +   Q  G + +
Sbjct: 187 SMAFAM---EGEAQQTQGEAGIQRVVRAASKLRVVLASDEELMAHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|54310042|ref|YP_131062.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9]
 gi|46914481|emb|CAG21260.1| Putative DNA polymerase III, epsilon subunit [Photobacterium
           profundum SS9]
          Length = 246

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 89/248 (35%), Positives = 140/248 (56%), Gaps = 16/248 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R IV D ETTG++      +   IIEIGAVE+++   T  +F V++ P+ R   
Sbjct: 5   MKATNQRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEIINRKLTGNSFHVYIKPD-RTIE 63

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114
            EA+ +HGITDEFL  KP +  +  EF +F   + AE +AHNA FDVGF++ E +++N  
Sbjct: 64  VEAIGVHGITDEFLIGKPVYKEVHDEFLEFI--KGAELVAHNAPFDVGFMDYEFRKLNPN 121

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                D  ++ DTL++A++  P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ 
Sbjct: 122 IGKTEDFCKVTDTLAMAKKIFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLL 181

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           M  G + +    +  EDR    E +     S   R        + +E++ H+  +  + K
Sbjct: 182 MTGGQTSLALSAER-EDRDAGTESEIKRIAS--GRKLLKVLHASADEIEAHESRLDIISK 238

Query: 234 NA--IWDR 239
            +  +W +
Sbjct: 239 KSDVMWRQ 246


>gi|187924850|ref|YP_001896492.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN]
 gi|187716044|gb|ACD17268.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans
           PsJN]
          Length = 244

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 87/239 (36%), Positives = 134/239 (56%), Gaps = 14/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRI+E+G VE+++   T      ++ P  R++ P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARTGDRILELGCVEMVNRRLTGNNLHFYINPE-RESDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL DKP F+ I  +F DF   Q+A+ I HNA FD+GF++AE   +   P+      I
Sbjct: 60  TTEFLSDKPKFAEIADQFRDFI--QDADLIIHNAPFDIGFLDAEFALLGLPPVKTYCGEI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +  
Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                            P ++L   D  +    + +EL  H   +  L K     ++W 
Sbjct: 178 DM---LGESHAGGDAHAPRVALSSLD-LIVVTASDDELAAHQAVLDGLDKAIKGTSVWR 232


>gi|296101380|ref|YP_003611526.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055839|gb|ADF60577.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 243

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 85/242 (35%), Positives = 135/242 (55%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++ +D    + 
Sbjct: 66  HGIADEFLLDKPTFAEVADEFLDYI--KGAELVIHNASFDIGFMDYEFSKLQRDIPKTNT 123

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  + R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F     E+   + + +      + +  +      + EEL  H+  +   Q  G + +
Sbjct: 184 SMKFSM---ENESQQTQGEAGIQRVVRQASRLRVVLASDEELLNHESRLDLVQKKGGSCM 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|46201693|ref|ZP_00054536.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 230

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 92/234 (39%), Positives = 133/234 (56%), Gaps = 6/234 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D     R++EIG VEL ++  T   F  +  P  R    EA K+HG+
Sbjct: 1   MREIVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGEVFHRYCNPE-RDMPEEAFKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+ I ++F +F    +A  + HNA+FD+ FINAEL R+    L  SR ID
Sbjct: 60  SVEFLSDKPLFAEIVADFLEFIG--DAPLVIHNAEFDMRFINAELARLGFPALPMSRSID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +AR+K P ++ +L++LC+R+ I  +HR+KHGALLDS LL++VY++++ GG Q     
Sbjct: 118 TVMMARKKFPGAQANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQLI-GGRQPGLEL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
              +                    +P     T+EE   H   +  L KNA+W R
Sbjct: 177 GGGKGNGAGSAASASTQEVKRDFREPRPHGPTEEETAAHTAFVAKL-KNAVWLR 229


>gi|293392715|ref|ZP_06637034.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera
           DSM 4582]
 gi|291424832|gb|EFE98042.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera
           DSM 4582]
          Length = 245

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 86/249 (34%), Positives = 133/249 (53%), Gaps = 18/249 (7%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           +     R+IV D ETTG++      +  RIIEIGAVE+++   T R + V++ P+ R   
Sbjct: 1   MITTPTRQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPD-RLVD 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA  +HGI+DEFL DKP+F  I  EF +F   +  E + HNA FD+GF++ E + + +D
Sbjct: 60  PEAYGVHGISDEFLADKPTFDQIADEFIEFI--RGGELVIHNAAFDIGFMDHEFRMLQQD 117

Query: 117 PLDPSRII---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                      D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ 
Sbjct: 118 IPKTETFCAITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLA 177

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-- 231
           M  G  Q    F+   D    +  + +  I+            + +E+  H+  +  +  
Sbjct: 178 MTGG--QTTMAFQMEGDTQQSDSTQDIQRIAR-PATSMKVIYASDDEVVAHESRLDLVAK 234

Query: 232 --GKNAIWD 238
             G N +W 
Sbjct: 235 KGGGNCLWR 243


>gi|307250533|ref|ZP_07532477.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857426|gb|EFM89538.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 248

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 88/241 (36%), Positives = 134/241 (55%), Gaps = 16/241 (6%)

Query: 11  VFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           V D ETTG+           IIEIGAVE+++   T RTF V++ P  R+   EA+K+HGI
Sbjct: 2   VLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVEEEAIKVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122
           T+EFL+DKP F+ +  EF +F   + AE I HNA FDV F++ E   +   P    +   
Sbjct: 61  TNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCS 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++ MM GG    
Sbjct: 119 VTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLAL 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
            G +             +  I+  +    +   +++EE   H++ ++ + K    N IW 
Sbjct: 178 LGEEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWM 237

Query: 239 R 239
           R
Sbjct: 238 R 238


>gi|331019245|gb|EGH99301.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 259

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 98/257 (38%), Positives = 141/257 (54%), Gaps = 16/257 (6%)

Query: 1   MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  +N   R IV D ETTG+      RI+EIG VEL+    T R F V+L P+ R++   
Sbjct: 1   MTVQNLDNRSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115
           A+ +HGIT+EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +     
Sbjct: 60  AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDK 117

Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D     +I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M
Sbjct: 118 ADITRHCKILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKT-VPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231
             G + ++     ++     E        I  L  D+      R ++ EL EH+  + T+
Sbjct: 178 TGGQTSLSLAGNASDGNGSAEGSGNRGSEIRRLPADRKPCRVIRASESELAEHEVRMTTI 237

Query: 232 GKN----AIWDRYISSN 244
            K     A+W + + + 
Sbjct: 238 AKATGAPALWVQMLEAG 254


>gi|58579186|ref|YP_197398.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417812|emb|CAI27016.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 242

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 93/239 (38%), Positives = 140/239 (58%), Gaps = 9/239 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   N +R+I  D ETTGLD+   DRIIE+G +EL+D   T + F  ++ P  R     A
Sbjct: 1   MSYYNGIREIALDTETTGLDADGGDRIIEMGCIELIDRVFTGKVFHEYINPE-RDIPYYA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGIT + LKDKP FS I  +F DF    N+  + HNA FD+ FI  EL +I K    
Sbjct: 60  TKIHGITVDMLKDKPKFSEIADKFLDFIG--NSVLVIHNAVFDIKFIKMELDKIQKSYNS 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +++DTL +AR+K P   + L++LCKR+ I++  R  HGALLD+ LL  VY+++M GG 
Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCKRFNISLQDRKFHGALLDATLLGKVYVQLM-GGL 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           Q +  F+ N   F   +     + S ++   P   ++++EE+ +H   ++ + KN IW+
Sbjct: 177 QRSLNFQDNSSMFQSSDYSHDVSRSYIE---PRLYKVSEEEIVKHKMLLEKI-KNPIWN 231


>gi|240138045|ref|YP_002962517.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
 gi|240008014|gb|ACS39240.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
          Length = 236

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 92/240 (38%), Positives = 143/240 (59%), Gaps = 10/240 (4%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+IV D ETTG +++N DR+IEIG VEL+++ +T  TF   + P  R  S  A  +HGI
Sbjct: 2   LREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGAFAVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSR 122
           +D  L DKP F+ +   F +F    +A  + HNA FDVGF+N E  R+       +    
Sbjct: 61  SDAMLADKPVFAEVVDAFLEFCG--DARLVIHNAPFDVGFLNMEFARLGPAAPKAIALED 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +ARRKHP + N+L++LC RYG+  + R KHGALLD+ +L++VY++++ GG Q +
Sbjct: 119 VVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQTS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
            G    E            +  +    +P+ +R+T+ E   HD  +++LG NA+W  Y+ 
Sbjct: 178 LGLSIAEPAETVALGALTDSGPVG--PRPIRSRLTEGERLRHDSFVESLGTNAVWREYME 235


>gi|88857806|ref|ZP_01132448.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudoalteromonas tunicata D2]
 gi|88819423|gb|EAR29236.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudoalteromonas tunicata D2]
          Length = 252

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 92/237 (38%), Positives = 135/237 (56%), Gaps = 12/237 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG+D K   RIIEIG VEL++   T   F V++ P  R    EA+ +HGIT
Sbjct: 19  RQIVLDTETTGIDPKLGHRIIEIGCVELINRRFTGNNFHVYINPE-RDIEDEAIDVHGIT 77

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPLDPSRI 123
           ++FL+DKP F  I  EF+D+   Q AE + HNA FDVGF+++E QR+           ++
Sbjct: 78  NQFLRDKPKFHHIAQEFFDYI--QGAELVIHNAAFDVGFMDSEFQRLRTGYPKTAQFCQV 135

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR  HP  +N+L++LC+RY I    R+ HGALLDS +LSDVY+ M  G   +N 
Sbjct: 136 LDTLKMARELHPGQKNNLDALCRRYNIDNGKRTMHGALLDSEILSDVYLAMTGGQVSLNL 195

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIW 237
             +T  +   +++ + +   S   R        T +E   H + +  + K     +W
Sbjct: 196 NTQTVGEENAQKQGEIIRLNS--DRAPLNIVYATADENQAHIERLALVEKKSSQCLW 250


>gi|145633563|ref|ZP_01789291.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655]
 gi|144985769|gb|EDJ92383.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655]
          Length = 256

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 94/258 (36%), Positives = 144/258 (55%), Gaps = 19/258 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKDLAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175

Query: 174 MMVGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           M  G + +       ++   R  +E+       ++         + T +EL  H + ++ 
Sbjct: 176 MTGGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKM 235

Query: 231 LGK----NAIWDRYISSN 244
           L K    N +WD+   +N
Sbjct: 236 LNKKSGNNCLWDKRFGNN 253


>gi|157147189|ref|YP_001454508.1| DNA polymerase III subunit epsilon [Citrobacter koseri ATCC
           BAA-895]
 gi|157084394|gb|ABV14072.1| hypothetical protein CKO_02968 [Citrobacter koseri ATCC BAA-895]
          Length = 246

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 139/242 (57%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119
           HGI DEFL DKP F+ +  +F ++   + AE + HNA FD+GF++ E  ++++      +
Sbjct: 69  HGIADEFLLDKPVFADVVDDFLEYI--RGAELVIHNASFDIGFMDYEFAKLSRGIPKTSE 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++ARR  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKITDSLALARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLAMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +   +   ++ + T+  I + +  K      T EEL  H+  +   Q  G + +
Sbjct: 187 SMAFSME--GETQQQQGEATIQRI-VRQASKLRVVLATDEELMAHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|152968805|ref|YP_001333914.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953654|gb|ABR75684.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 243

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 133/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++N+       
Sbjct: 66  HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNASFDIGFMDYEFSKLNRGIGKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +    +   E         +    +      + EEL  H+  +   Q  G + +
Sbjct: 184 SMAFSMEGESQQQAGEMGIQR---VVRAGSQLRVVYASDEELANHESRLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|323157950|gb|EFZ44052.1| DNA polymerase III, epsilon subunit [Escherichia coli EPECa14]
          Length = 246

 Score =  232 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 135/236 (57%), Gaps = 14/236 (5%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            + F  +   +   ++ + T+  I + +  K      T EEL  H+  +  + K A
Sbjct: 184 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVEKKA 236


>gi|315126186|ref|YP_004068189.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
 gi|315014700|gb|ADT68038.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
          Length = 237

 Score =  232 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 88/238 (36%), Positives = 139/238 (58%), Gaps = 13/238 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG+D K   RIIEIG VEL++   T   F V++ P  R    EA+ +HGIT
Sbjct: 4   RQIVLDTETTGIDPKQGHRIIEIGCVELMNRRLTGNNFHVYINPQ-RSIEEEAIDVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSRI 123
           +EFL+DKP F  I  EF+D+   ++AE + HNA FD+G ++ E   +N+   +  D   +
Sbjct: 63  NEFLRDKPLFRDIAQEFFDYI--KDAELVIHNAPFDIGHMDNEFALLNQGYQNTHDFCGV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR  HP  +N+L++LC+RY +  + R+ HGALLDS +L+DVY+ M  G  ++N 
Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDVDNTKRTLHGALLDSEILADVYLAMTGGQVKLN- 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238
               N+D   +++K  +  ++   R   +    ++ E   H   +  +   G + +W 
Sbjct: 180 -LNQNKDDSSEDQKGGIRRLN-SDRAPLVVVAASEAEQSAHQSRLDIVQKEGGHCLWR 235


>gi|262044050|ref|ZP_06017130.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330005755|ref|ZP_08305367.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3]
 gi|259038622|gb|EEW39813.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328536123|gb|EGF62511.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3]
          Length = 246

 Score =  232 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 133/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++N+       
Sbjct: 69  HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNASFDIGFMDYEFSKLNRGIGKTET 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +    +   E         +    +      + EEL  H+  +   Q  G + +
Sbjct: 187 SMAFSMEGESQQQAGEMGIQR---VVRAGSQLRVVYASDEELANHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|254560605|ref|YP_003067700.1| DNA polymerase III subunit epsilon [Methylobacterium extorquens
           DM4]
 gi|254267883|emb|CAX23749.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           DM4]
          Length = 236

 Score =  232 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 92/240 (38%), Positives = 143/240 (59%), Gaps = 10/240 (4%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+IV D ETTG +++N DR+IEIG VEL+++ +T  TF   + P  R  S  A  +HGI
Sbjct: 2   LREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGAFAVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSR 122
           +D  L DKP F+ +   F +F    +A  + HNA FDVGF+N E  R+       +    
Sbjct: 61  SDAMLADKPVFAEVVDAFLEFCG--DARLVIHNAPFDVGFLNMEFARLGPAAPKAIALED 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +ARRKHP + N+L++LC RYG+  + R KHGALLD+ +L++VY++++ GG Q +
Sbjct: 119 VVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQTS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
            G    E            +  +    +P+ +R+T+ E   HD  +++LG NA+W  Y+ 
Sbjct: 178 LGLSIAEPAETVTLGALTDSGPVG--PRPMRSRLTEGERLRHDSFVESLGTNAVWREYME 235


>gi|56550935|ref|YP_161774.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56542509|gb|AAV88663.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 234

 Score =  232 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 131/239 (54%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGL     DR++EIG VEL++  +T  +F  +  P  R     A  +HG+
Sbjct: 1   MREIVFDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNPE-RPMDAVAESIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D FL DKP F+    E   F     +  +AHNA FD GF+N EL +     +  +R++D
Sbjct: 60  SDAFLADKPLFADKAQELLSFIKL--SPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR KHP +++ L++LC RYGI  SHR KHGALLD+ LL+ +Y+++  GG QI    
Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVELT-GGRQIGMAL 176

Query: 186 KTNEDRFFKEEK-----KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             N                +P    +KR +P     + +EL  H   I  +  N +W R
Sbjct: 177 DDNNGPSDGRLSAPNTVSGLPRNKKVKR-QPRPHEASPQELLRHGAFIDKIS-NPVWRR 233


>gi|91775831|ref|YP_545587.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
 gi|91709818|gb|ABE49746.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
          Length = 231

 Score =  232 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 95/236 (40%), Positives = 137/236 (58%), Gaps = 14/236 (5%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  ++  RIIEI  VEL++   TN  F V+L P+ R+    A ++HGI
Sbjct: 3   MRQIFLDTETTGLYHAQGHRIIEIAGVELVNRRLTNNHFHVYLNPD-REIDEAAQEVHGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T EFL+DKP F+ I  EF  F +   A+ I HNA FD+GF+NAEL R+ +  ++ S   I
Sbjct: 62  TLEFLQDKPRFADIVDEFLQFVS--GADLIIHNAPFDIGFLNAELNRVGRQNIEHSVLEI 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +A+   P  RN+L++LC+ YGI  S R+ HGALLD+ LL+DVY+ M  G   +  
Sbjct: 120 IDTLKMAKEMRPGQRNNLDALCRHYGIDNSSRTLHGALLDAELLADVYMAMTRGQESLMI 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIW 237
                 D   +   +    I L +    L    ++ EL  H++ +Q + K+   +W
Sbjct: 180 ------DMLDQGPIEGSGEIRLTRSKPLLVLTASEAELAAHEEYLQAMSKSGACVW 229


>gi|92114064|ref|YP_573992.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens
           DSM 3043]
 gi|91797154|gb|ABE59293.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens
           DSM 3043]
          Length = 253

 Score =  232 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 90/253 (35%), Positives = 139/253 (54%), Gaps = 17/253 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D K   R+IEIGAVE+++   T   +  ++ P  R   PEA+++HGI
Sbjct: 1   MRQIVLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPE-RDIDPEAVEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--------KDP 117
           T+E + D+P F+ I   FW++   + AE + HNA FDVGFI+ E   ++           
Sbjct: 60  TNERVADEPVFADIADAFWEYI--RGAELVIHNAAFDVGFIDHEFGLLHDKRGGPRLGPV 117

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            D   ++DTL++AR+ HP  RN+L++LCKRYGI    R  HGALLD+ +LSDVY+ M  G
Sbjct: 118 ADYCSVLDTLAMARKLHPGQRNNLDALCKRYGIDNGRRVLHGALLDAEILSDVYLTMTGG 177

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTL---G 232
            + ++            ++  +V  I  + R+      TR ++ E   H   + ++    
Sbjct: 178 QTALSLAGIEERAGDEGQDANSVSGIRRVSREGLSLAVTRPSEAEEAAHRAKLDSIRQAA 237

Query: 233 KNAIWDRYISSNQ 245
               WD    ++Q
Sbjct: 238 GQCHWDALNDASQ 250


>gi|319787627|ref|YP_004147102.1| DNA polymerase III subunit epsilon [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466139|gb|ADV27871.1| DNA polymerase III, epsilon subunit [Pseudoxanthomonas suwonensis
           11-1]
          Length = 247

 Score =  232 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 93/241 (38%), Positives = 142/241 (58%), Gaps = 14/241 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIG VELL+   + R F  +L P+       A ++ G+
Sbjct: 1   MRQIILDTETTGLEWKKGNRVVEIGCVELLERRPSGRNFHRYLKPDC-DFEAGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           T EFL DKP+F  I  EF ++ +   AE I HNA FD+GF++ EL R        +D   
Sbjct: 60  TLEFLADKPAFEEIVDEFLEYID--GAELIIHNAAFDLGFLDYELSRCGAHLGRIVDRCS 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLLLARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWDR 239
           FG   + +   +    T  + + +  ++P  +    EEL+ H + ++ L K    A+WD+
Sbjct: 178 FG---DVEAASRGPVVTTVSFAPVSGERPRIS-AQPEELEAHARRLERLRKKAGRALWDQ 233

Query: 240 Y 240
           Y
Sbjct: 234 Y 234


>gi|237746089|ref|ZP_04576569.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes HOxBLS]
 gi|229377440|gb|EEO27531.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes HOxBLS]
          Length = 248

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 96/240 (40%), Positives = 136/240 (56%), Gaps = 16/240 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL +   DRIIEIG VE+L+   T+  F  ++ P  R + P+AL +HG+
Sbjct: 1   MRQIVLDTETTGLYANDGDRIIEIGCVEVLNRRVTDHHFHQYINPE-RDSHPDALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL DKP F+ I   F DF   + AE + HNA FDVGF+NAEL R+N  P++   S I
Sbjct: 60  TTEFLSDKPKFAEIAQAFCDFI--KGAELVIHNAPFDVGFLNAELARLNLPPVEELASCI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L  AR   P  RN L++LC+R+ I  +HR+ HGALLD+ LL++VY+ M  G   +  
Sbjct: 118 TDSLLKARDMFPGRRNSLDALCERFEIDNTHRTLHGALLDAELLAEVYLAMTRGQETLEI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK-----NAIWD 238
                E       ++       L   + L    T+EEL +H++ +  + K       +W 
Sbjct: 178 -----EKLTLSAAEEEARKNHPLSSLRILVLAPTEEELQKHEEVLDDIEKGNKGAPCVWR 232


>gi|153835770|ref|ZP_01988437.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01]
 gi|156975479|ref|YP_001446386.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116]
 gi|148867537|gb|EDL66875.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01]
 gi|156527073|gb|ABU72159.1| hypothetical protein VIBHAR_03210 [Vibrio harveyi ATCC BAA-1116]
          Length = 238

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 93/239 (38%), Positives = 142/239 (59%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R+  P+A+ 
Sbjct: 11  RIVVLDTETTGMNLEGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPDAIG 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118
           +HGITDEFL DKP +S++  EF DF   + AE +AHNA FD GF++ E + +N       
Sbjct: 70  VHGITDEFLVDKPEYSAVHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEMLNPSIGKTD 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           + + F          K++ +      +  R      R T +E++ H K ++ +  + IW
Sbjct: 188 TSLEF-------NANKKDGEAEGIRRVEGRKALKVLRATADEVEAHQKRLELVNDS-IW 238


>gi|87198139|ref|YP_495396.1| DNA polymerase III, epsilon subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133820|gb|ABD24562.1| DNA polymerase III, epsilon subunit [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 230

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 92/234 (39%), Positives = 132/234 (56%), Gaps = 6/234 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD +  DR++EIG +E+ +   T   F  +  P  R    EA  +HG+
Sbjct: 2   MREIVFDTETTGLDPRSGDRLVEIGCIEMFNRVPTGAVFHCYFNPE-RDMPAEAEAVHGL 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  FL DKP F+    +   F    ++  +AHNA FD GFIN EL+   ++P+   R++D
Sbjct: 61  SIAFLSDKPKFAEKADDLLAFIA--DSPMVAHNAGFDFGFINNELELCGREPVSRDRMVD 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T++IARRKHP ++  L++LC RYGI  SHR+KHGALLD+ LL+ +Y+++  GG QI    
Sbjct: 119 TVAIARRKHPGAKLSLDALCSRYGIDRSHRTKHGALLDAELLAQLYVEL-QGGRQIGLEL 177

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                    EE  TV +        P     + EEL  H + +    +  IW R
Sbjct: 178 AAQSAIAVTEEVVTVTSSVTRVFRSPRPHSASAEELARHAEFMAGFSE-PIWSR 230


>gi|28870866|ref|NP_793485.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28854115|gb|AAO57180.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 257

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 96/249 (38%), Positives = 138/249 (55%), Gaps = 15/249 (6%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+      RI+EIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 7   RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 65

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPSR 122
           +EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +      D     +
Sbjct: 66  NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCK 123

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++
Sbjct: 124 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLS 183

Query: 183 FGFKTNEDRFFKEEKKT-VPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKN----A 235
                ++     E        I  L  D+      R ++ EL EH+  + T+ K     A
Sbjct: 184 LAGNASDGNGSAEGSGNRGSEIRRLPADRKPCRVIRASESELAEHEVRMTTIAKATGAPA 243

Query: 236 IWDRYISSN 244
           +W + + + 
Sbjct: 244 LWVQMLEAG 252


>gi|152978551|ref|YP_001344180.1| DNA polymerase III subunit epsilon [Actinobacillus succinogenes
           130Z]
 gi|150840274|gb|ABR74245.1| DNA polymerase III, epsilon subunit [Actinobacillus succinogenes
           130Z]
          Length = 259

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 97/256 (37%), Positives = 147/256 (57%), Gaps = 15/256 (5%)

Query: 1   MIRKNKM-RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M  +N++ R+IV D ETTG++      +   IIEIGAVEL++   T R   +++ P+ R 
Sbjct: 1   MKEENEIIRQIVLDTETTGMNQFGAHYEGHCIIEIGAVELINRKYTGRKLHLYVKPD-RP 59

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             PEA+K+HGITDE L DKP FS++  EF DF   ++AE + HNA FDVGF++ E ++ +
Sbjct: 60  IDPEAIKVHGITDEMLADKPDFSTVAQEFIDFI--KDAELLIHNAPFDVGFMDYEFRKHH 117

Query: 115 KD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            D    D   + DTL +ARR++P  RN+L++LC R  I  S R+ HGALLD+ +L DVY+
Sbjct: 118 IDIKTADICTVTDTLQMARRQYPGKRNNLDALCDRLHIDNSKRTLHGALLDAEILGDVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G   +    +T       EE +       +  +  +   +T+EEL  H + +  + 
Sbjct: 178 AMTGGQVSLFAEEETEISVQKTEEIEEEFIPVQVSSEGLIALPLTEEELAAHTEYLSLIN 237

Query: 233 K----NAIWDRYISSN 244
           K    N IW + +S +
Sbjct: 238 KKSKDNCIWIKRLSPD 253


>gi|91793373|ref|YP_563024.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
 gi|91715375|gb|ABE55301.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
          Length = 242

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 86/242 (35%), Positives = 132/242 (54%), Gaps = 20/242 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+I+ D ETTG++          RIIEIG VE+++   T RT+  ++ P G+   PEA+ 
Sbjct: 9   RQIILDTETTGMNQAGGAIYIGHRIIEIGCVEVINRRLTGRTYHQYINP-GQSIDPEAIA 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPL 118
           +HGITDE + ++P F  I  EF DF   Q AE +AHNA FDV F++ E   +        
Sbjct: 68  VHGITDERVANEPRFHQIAQEFIDFI--QGAEIVAHNASFDVSFMDHEFSMLQPRGPKTK 125

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D + I+D+L+IA+R HP  +N+L++LCKRYGI  S R+ HGALLD+ +L+DVY+ M  G 
Sbjct: 126 DITDILDSLAIAKRLHPGQKNNLDALCKRYGIDNSRRTYHGALLDAEILADVYLLMTGGQ 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL--GKNAI 236
            + N       +    +E   +  +     +       + +EL  H+  +  +      +
Sbjct: 186 IKFNL-----SNEQAGQEAGGIQRLDPSGFN-LKVIAASADELVLHESRLDLVQKSGKCL 239

Query: 237 WD 238
           W 
Sbjct: 240 WR 241


>gi|209517197|ref|ZP_03266042.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
 gi|209502333|gb|EEA02344.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
          Length = 244

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 85/239 (35%), Positives = 131/239 (54%), Gaps = 14/239 (5%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+ +  DRI+E+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNPRGGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL DKP F+ I  +F DF   Q+A+ I HNA FD+GF++ E   +   P+      I
Sbjct: 60  TTEFLSDKPKFAEIIDQFRDFI--QDADLIIHNAPFDIGFLDTEFALLGLPPVSTYCGEI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +  
Sbjct: 118 IDTLAQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                            P ++L   +  +    + +E   H+  +  L K     ++W 
Sbjct: 178 DM---LGEAQTGGDTHAPRVALESLE-LVVVAASDDESAAHEAVLDDLDKAVKGTSVWR 232


>gi|119476004|ref|ZP_01616356.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2143]
 gi|119450631|gb|EAW31865.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2143]
          Length = 236

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 93/232 (40%), Positives = 132/232 (56%), Gaps = 10/232 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTGL+  +  RIIEIG VEL+D   T R +  ++ P  R+    A+++HGI
Sbjct: 1   MRQVVLDTETTGLEPSQGHRIIEIGCVELVDRKLTGRHYHQYINPK-REIDTGAMEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPS 121
           T+EFL DKP FS +  EF DF     AE I HNA FD+GFIN+E + ++           
Sbjct: 60  TNEFLADKPLFSQVAQEFLDFV--TGAELIIHNAPFDIGFINSEFKLLDSKSPGTMESYC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR+KHP  RN L++LC RY +  S R  HGALLDS +L+DVY+ M  G +++
Sbjct: 118 GVVDTLVMARQKHPGQRNSLDALCSRYEVDNSQRDLHGALLDSEILADVYLLMTGGQTKL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
                 NE+     +       +   R          EEL EH++ +Q + K
Sbjct: 178 LLAGDDNEEGSGHSDNNIRRLST--NRQPLKIILANDEELAEHEERMQKIDK 227


>gi|299133202|ref|ZP_07026397.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2]
 gi|298593339|gb|EFI53539.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2]
          Length = 230

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 98/239 (41%), Positives = 143/239 (59%), Gaps = 10/239 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD+ + DR++EIG VE+ ++  T +T+ V++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLDALRGDRLVEIGCVEMFNHMPTGQTYHVYINPE-RDMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F+++  +F  F    +A  I HNA FD+GFIN EL+R+ +  +   R++D
Sbjct: 60  SSEFLSDKPLFAAVAEDFLTFIG--DAPLIIHNASFDIGFINMELERVKRAAIPRERLVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRKHP   N L+ LC RY I  S R+KHGALLD+ LL++VYI ++ G  Q +   
Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLI-GARQSSLIL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
                   +     V  +    R+ PL  R+T EE++ H   + TLG N IW  +  + 
Sbjct: 177 AET-----RTTSIRVVEVERRVREVPLPPRMTPEEIEAHRAFVATLGDNPIWREFSDAE 230


>gi|269960617|ref|ZP_06174989.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3]
 gi|269834694|gb|EEZ88781.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3]
          Length = 238

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 142/239 (59%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D ETTG++ +        RI+EIGAVE+++   T R F V+L P+ R+  P+A+ 
Sbjct: 11  RIVVLDTETTGMNLEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYLKPD-REIQPDAIG 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118
           +HGITDEFL DKP +S++  EF DF   + AE +AHNA FD GF++ E + +N       
Sbjct: 70  VHGITDEFLVDKPEYSAVHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEMLNPSIGKTD 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           + + F          K++ +      +  R      R T +E++ H K ++ +  + IW
Sbjct: 188 TSLEF-------NANKKDGEAEGIRRVEGRKALKVLRATADEVEAHQKRLELVNDS-IW 238


>gi|213968849|ref|ZP_03396990.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           tomato T1]
 gi|301384105|ref|ZP_07232523.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059179|ref|ZP_07250720.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           K40]
 gi|302135017|ref|ZP_07261007.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926452|gb|EEB60006.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           tomato T1]
          Length = 259

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 98/257 (38%), Positives = 141/257 (54%), Gaps = 16/257 (6%)

Query: 1   MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  +N   R IV D ETTG+      RI+EIG VEL+    T R F V+L P+ R++   
Sbjct: 1   MTVQNLDNRSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115
           A+ +HGIT+EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +     
Sbjct: 60  AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDK 117

Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D     +I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M
Sbjct: 118 ADITRHCKILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKT-VPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231
             G + ++     ++     E        I  L  D+      R ++ EL EH+  + T+
Sbjct: 178 TGGQTSLSLAGNASDGNGSAEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTI 237

Query: 232 GKN----AIWDRYISSN 244
            K     A+W + + + 
Sbjct: 238 AKATGAPALWVQMLEAG 254


>gi|50122261|ref|YP_051428.1| DNA polymerase III subunit epsilon [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612787|emb|CAG76237.1| DNA polymerase III, epsilon chain [Pectobacterium atrosepticum
           SCRI1043]
          Length = 245

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 86/242 (35%), Positives = 141/242 (58%), Gaps = 16/242 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNI 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL DKP+++ +  +F DF   + AE + HNA FD+GF++ E + +N++      
Sbjct: 66  HGISDEFLADKPTYADVADDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRNIPKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR+  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKITDSLFMARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            + F  +  E +   E  +T+  I +  +         + EL  H++ +  +   G + +
Sbjct: 184 SLTFSME-GEAQRQNESNETIQRI-VRPQSALKVLYADETELLAHEQRLDLVAKKGGSCL 241

Query: 237 WD 238
           W 
Sbjct: 242 WR 243


>gi|167648966|ref|YP_001686629.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31]
 gi|167351396|gb|ABZ74131.1| DNA polymerase III, epsilon subunit [Caulobacter sp. K31]
          Length = 238

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 89/235 (37%), Positives = 135/235 (57%), Gaps = 9/235 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTG D K  DR++EIG +E++D+  T R+F  +  P  R    EA K+HG++
Sbjct: 3   REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEYCDP-LRDMPAEAQKVHGLS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            EFL  KP F  I   F +F    ++  IAHNA FD  F+N EL++ N+ PL  SR +DT
Sbjct: 62  IEFLTGKPKFHEIADAFLEFVG--DSPVIAHNAAFDRSFVNFELEKCNRGPLPESRWVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LCKR+ I++  R KHGAL+D+HLL++VY+++  GG +      
Sbjct: 120 LAMAKKRFPGMYNSLDALCKRFKISLDSRDKHGALIDAHLLAEVYLEL-QGGKERALELT 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-LGKNAIWDRY 240
                      +     S   R +PL  R T+EE   H   +Q      A+W ++
Sbjct: 179 QVVAVNAVSAARAG---SYGARPRPLPPRSTEEERQLHAAFVQKNFKDKAVWIQF 230


>gi|288940138|ref|YP_003442378.1| DNA polymerase III subunit epsilon [Allochromatium vinosum DSM 180]
 gi|288895510|gb|ADC61346.1| DNA polymerase III, epsilon subunit [Allochromatium vinosum DSM
           180]
          Length = 240

 Score =  231 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 88/239 (36%), Positives = 123/239 (51%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +   RIIEIG VEL+D   T R F  +L P  R+   EA  +HGI
Sbjct: 1   MRQIVLDTETTGLEPREGHRIIEIGCVELVDRRPTGRNFHEYLNPE-RQIDAEAEAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++ FL DKP F+       ++   + AE I HNA FDVGF++ E              + 
Sbjct: 60  SNAFLADKPRFAERAERLVEYL--RGAELIIHNAAFDVGFLDHEFGLWRGAEAPRIADLC 117

Query: 126 T----LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           T    L +AR+ HP  RN L++LCKRY I  SHR+ HGALLD+ +L+DVY+ M  G   +
Sbjct: 118 TVTDSLLMARKLHPGQRNGLDALCKRYAIDNSHRTLHGALLDAEILADVYLAMTGGQVSL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIW 237
             G +        E       +   +R +    R T+ EL+ H   +  +       +W
Sbjct: 178 YLGGEGMNGSGVGEGPVHRGRLDP-ERPRLRVVRATQTELEAHRVRLDAIWKASGGCVW 235


>gi|218529738|ref|YP_002420554.1| DNA polymerase III subunit epsilon [Methylobacterium
           chloromethanicum CM4]
 gi|218522041|gb|ACK82626.1| DNA polymerase III, epsilon subunit [Methylobacterium
           chloromethanicum CM4]
          Length = 236

 Score =  231 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 92/240 (38%), Positives = 144/240 (60%), Gaps = 10/240 (4%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+IV D ETTG +++N DR+IEIG VEL+++ +T  TF   + P  R  S  A  +HGI
Sbjct: 2   LREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGAFAVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSR 122
           +D  L DKP F+ +   F +F +  +A  + HNA FDVGF+N E  R+       +    
Sbjct: 61  SDAMLADKPVFAEVVDAFLEFCS--DARLVIHNAPFDVGFLNMEFARLGPAAPKAIALED 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +ARRKHP + N+L++LC RYG+  + R KHGALLD+ +L++VY++++ GG Q +
Sbjct: 119 VVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQTS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
            G    E            +  +    +P+ +R+T+ E   HD  +++LG NA+W  Y+ 
Sbjct: 178 LGLSIAEPAETVALGALTDSGPVG--PRPIRSRLTEGERLRHDSFVESLGTNAVWREYME 235


>gi|53805082|ref|YP_113230.1| DNA polymerase III subunit epsilon [Methylococcus capsulatus str.
           Bath]
 gi|53758843|gb|AAU93134.1| DNA polymerase III, epsilon subunit [Methylococcus capsulatus str.
           Bath]
          Length = 267

 Score =  231 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 98/272 (36%), Positives = 135/272 (49%), Gaps = 44/272 (16%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD K   RIIEIG VELLD   T   F V++ P  R+    A+++HG+
Sbjct: 1   MRQIVLDTETTGLDPKAGHRIIEIGCVELLDRRITQNRFHVYINPE-REIDAGAIEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           T+EFL   P F +I  +F +F +   AE I HNA FDVGF++ EL  +        D   
Sbjct: 60  TNEFLAGMPVFRNIADDFLNFIS--GAELIIHNAAFDVGFLDHELSLLGENRGRIADYCG 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I DTL++AR+ HP  RN L++LCKRY +  S R  HGALLD+ +L+DVY+ M  G  QI 
Sbjct: 118 ICDTLAMARKNHPGQRNSLDALCKRYNVDNSRRELHGALLDAEILADVYLAMTGG--QIT 175

Query: 183 FGFKTNEDRFFK-------------------------------EEKKTVPNISLLKRDKP 211
              + + +                                   E ++  P      R + 
Sbjct: 176 MLLEADAESGGARGSDGGFERFVVNPSAGSVHAQPGPLGANSVEREQAAPRSVDTARPRL 235

Query: 212 LFTRITKEELDEHDKTIQTLGK----NAIWDR 239
              R T EE + H   ++ + K    N +W R
Sbjct: 236 RVIRSTPEEAEAHAARLEAIAKASSGNCLWSR 267


>gi|330810139|ref|YP_004354601.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378247|gb|AEA69597.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 253

 Score =  231 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 95/249 (38%), Positives = 136/249 (54%), Gaps = 15/249 (6%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 4   RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPSR 122
           +EFL  KP F+ +  EF++F   Q A+ I HNA FDVGFIN E   + +    D      
Sbjct: 63  NEFLVGKPRFAEVADEFFEFI--QGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++
Sbjct: 121 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLS 180

Query: 183 FGFKTNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----A 235
                ++     E    + T        R      R ++ +L EH   ++ + K+    A
Sbjct: 181 LAGNASDGNGTGEGSGNQATEIRRLPADRQPSRIIRASESDLAEHAARLEAIAKSAGAPA 240

Query: 236 IWDRYISSN 244
           +W +   S 
Sbjct: 241 LWTQLAESQ 249


>gi|330963305|gb|EGH63565.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 259

 Score =  231 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 98/257 (38%), Positives = 141/257 (54%), Gaps = 16/257 (6%)

Query: 1   MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  +N   R IV D ETTG+      RI+EIG VEL+    T R F V+L P+ R++   
Sbjct: 1   MTAQNLDNRSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115
           A+ +HGIT+EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +     
Sbjct: 60  AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDK 117

Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D     +I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M
Sbjct: 118 ADITRHCKILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKT-VPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231
             G + ++     ++     E        I  L  D+      R ++ EL EH+  + T+
Sbjct: 178 TGGQTSLSLAGNASDGNGSAEGSSNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTI 237

Query: 232 GKN----AIWDRYISSN 244
            K     A+W + + + 
Sbjct: 238 AKATGAPALWVQMLEAG 254


>gi|295677150|ref|YP_003605674.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
 gi|295436993|gb|ADG16163.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
          Length = 244

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 86/239 (35%), Positives = 132/239 (55%), Gaps = 14/239 (5%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRI+E+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARGGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ I  +F DF   Q A+ I HNA FD+GF++AE   +   P+      I
Sbjct: 60  TTEFLSDKPKFAEIIDQFRDFI--QGADLIIHNAPFDIGFLDAEFALLGLPPVSTHCGEI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +  
Sbjct: 118 IDTLAQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                            P ++L   +  +    + +E   H+  +  L K     ++W 
Sbjct: 178 DM---LGEAQAGGDTDAPRVALDSLE-LVVIAASDDESAAHEAVLDDLDKAIKGASVWR 232


>gi|223041838|ref|ZP_03612026.1| DNA polymerase III subunit epsilon [Actinobacillus minor 202]
 gi|223017331|gb|EEF15754.1| DNA polymerase III subunit epsilon [Actinobacillus minor 202]
          Length = 255

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 92/252 (36%), Positives = 144/252 (57%), Gaps = 17/252 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M+ +   R++V D ETTG++          IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MLEQEIHRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKPSF+ I  EF  F   + AE + HNA FDVGF++ E   +  
Sbjct: 60  EEEAIKVHGITNEFLQDKPSFAEIVDEFVAFI--KGAELVIHNAPFDVGFMDHEFSFLAN 117

Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P    +   + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCTVTDSLALARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            MM GG       + +++    +  +  P I+    +  +  +  + EL+ H   ++ L 
Sbjct: 178 -MMTGGQIALLAEEEHDENPQVDLLEEGPKIAFDTSN-SVILKADESELEAHQLFLKLLY 235

Query: 233 K----NAIWDRY 240
           K    N IW + 
Sbjct: 236 KKSKQNCIWGKR 247


>gi|146278706|ref|YP_001168865.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556947|gb|ABP71560.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 237

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 96/236 (40%), Positives = 136/236 (57%), Gaps = 8/236 (3%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            MR+IV D ETTG +  +  RI+EIGAVEL ++  T RT+  ++ P  R    EA ++HG
Sbjct: 8   PMREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHG 66

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           + DEFL+DKP FS I S F +F  E  A  + HNA FD+ F+N EL R+    L   R +
Sbjct: 67  LGDEFLRDKPVFSEIGSAFLEFVGE--ARLVIHNAAFDMKFLNFELGRVGLPRLPFERAL 124

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR++ P +   L++LC+R+G+  S R KHGALLDS +L++VY++++ GG Q +FG
Sbjct: 125 DTLALARKRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELI-GGRQPDFG 183

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
                                  R   L  RIT+EE   H   +  LG  AIW + 
Sbjct: 184 LSAAS---GTRSGGAEGEWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIWLKR 236


>gi|157375130|ref|YP_001473730.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157317504|gb|ABV36602.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 242

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 136/242 (56%), Gaps = 20/242 (8%)

Query: 8   RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+++ D ETTG++          RIIEIG VE+++   T R +  ++ P  +    EA++
Sbjct: 9   RQVILDTETTGMNQGAGAIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QIIDEEAIE 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPL 118
           +HGIT+E++ +KP F+ I   F DF +   AE +AHNA FDV F++ E   +        
Sbjct: 68  VHGITNEYVANKPKFAEISQSFIDFID--GAEVVAHNASFDVNFMDHEFSLLQPRGPKTA 125

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  +I+DTL IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+ M  G 
Sbjct: 126 DICQILDTLDIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLMMTGGQ 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236
           ++ N     + D+  + E   +   S   R      R T +EL +H++ +  + K+   I
Sbjct: 186 TKFNL----SGDKAGEGEGGIIRLNS--NRANLKVIRATADELTKHEERLDLVAKSGQCI 239

Query: 237 WD 238
           W 
Sbjct: 240 WR 241


>gi|226945027|ref|YP_002800100.1| DNA polymerase III subunit epsilon [Azotobacter vinelandii DJ]
 gi|226719954|gb|ACO79125.1| DNA polymerase III, epsilon subunit [Azotobacter vinelandii DJ]
          Length = 244

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 91/248 (36%), Positives = 137/248 (55%), Gaps = 14/248 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+   +  RIIEIG VEL     T R F V+L P+ R     A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTEGHRIIEIGCVELQGRRLTGRHFHVYLQPD-RTVDEGAVAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121
           TD+FL DKP F+ I  EF++F   + A+ I HNA FD+GFI  E  R+ +    D     
Sbjct: 60  TDDFLADKPRFADIAEEFFEFI--KGAQLIIHNAAFDIGFIEDEFSRLGQTERADVNAHC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR +HP  RN L++LCKRY +  S+R  HGALLD+ +L+DV++ M  G + +
Sbjct: 118 TVLDTLLMARERHPGQRNSLDALCKRYDVDNSNRDLHGALLDAEILADVWLAMTGGQTHL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237
           +   + +E+    +           +R +    R  ++EL  H + +  + K A    +W
Sbjct: 178 SLSGEGSENGGRAQASAIRRLSPERQRTR--VIRAGEQELAAHAERLAAIEKAAGAPPLW 235

Query: 238 DRYISSNQ 245
            +   + Q
Sbjct: 236 LQMEQAQQ 243


>gi|217970689|ref|YP_002355923.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|217508016|gb|ACK55027.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 239

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 94/238 (39%), Positives = 141/238 (59%), Gaps = 15/238 (6%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD +N DR+IEIG VELLD S T R + V++ P GR    EA+ +HGI
Sbjct: 1   MRQIVLDTETTGLDWRNGDRVIEIGCVELLDRSLTGRHYHVYINP-GRGIDAEAVAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T+EFL DKP F+ I ++F DF   ++AE + HNA FDVGF++AEL+R+ +  L    + +
Sbjct: 60  TEEFLADKPKFADIVADFEDFV--RDAELVIHNASFDVGFLDAELERLGRAKLGALCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +A+ ++P  +  L++LC RY I  +HR  HGALLD+ LL++V++ M  G   +  
Sbjct: 118 VDTLKLAKEQNPGKKASLDALCDRYEIDNAHRELHGALLDAELLAEVFLAMTRGQESLMI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
           G            +++    + + R      R + +E   HD  +  + K      +W
Sbjct: 178 GLDEE-----AAPRESDSEGTPVLRAAVRVLRASADECAAHDAALADIAKANKGLCLW 230


>gi|91784549|ref|YP_559755.1| DNA polymerase III subunit epsilon [Burkholderia xenovorans LB400]
 gi|91688503|gb|ABE31703.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
          Length = 244

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 87/239 (36%), Positives = 134/239 (56%), Gaps = 14/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRI+E+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL DKP F  I  +F DF   Q A+ I HNA FD+GF++ E   +   P+      I
Sbjct: 60  TTEFLSDKPKFGEIADQFRDFI--QGADLIIHNAPFDIGFLDVEFALLGLPPVSTYCGEI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                 +     + +  P +++   D  +    + +EL  H   +  L K     ++W 
Sbjct: 176 VIDMLGESHAGGDARA-PRVAIDSLD-LVVITASDDELAAHQALLDGLDKAIKGTSVWR 232


>gi|330878790|gb|EGH12939.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 259

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 99/257 (38%), Positives = 141/257 (54%), Gaps = 16/257 (6%)

Query: 1   MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  +N   R IV D ETTG+      RI+EIG VEL+    T R F V+L P+ R++   
Sbjct: 1   MTAQNLDNRSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115
           A+ +HGIT+EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   I     
Sbjct: 60  AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALIGAQDK 117

Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D     +I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M
Sbjct: 118 ADITRHCKILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKT-VPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231
             G + ++     ++     E        I  L  D+      R ++ EL EH+  + T+
Sbjct: 178 TGGQTSLSLAGNASDGNGSAEGSSNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTI 237

Query: 232 GKN----AIWDRYISSN 244
            K     A+W + + + 
Sbjct: 238 AKATGAPALWVQMLEAG 254


>gi|242240256|ref|YP_002988437.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech703]
 gi|242132313|gb|ACS86615.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech703]
          Length = 244

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 86/242 (35%), Positives = 138/242 (57%), Gaps = 16/242 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R++V D ETTG++      +  RIIEIGAVE+++   T R + V+L P+ R   PEA ++
Sbjct: 7   RQVVLDTETTGMNRLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYLKPD-RLVDPEAFQI 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL D+P+++ I  EF +F   + AE + HNA FD+GF++ E + +N+D      
Sbjct: 66  HGISDEFLIDRPAYADIVDEFIEFI--RGAELVIHNASFDIGFMDYEFRMLNRDIPKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++ARR  P  RN+L+ LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKITDSLAMARRLFPGKRNNLDVLCTRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            + F   + E        + +  I+              +EL  H++ +  +   G + +
Sbjct: 184 SLAFSSDS-EGTQQAVVAEAIQRIAR-PASALKVIHANDDELMAHEQRLDLVMKKGGSCL 241

Query: 237 WD 238
           W 
Sbjct: 242 WR 243


>gi|261820459|ref|YP_003258565.1| DNA polymerase III subunit epsilon [Pectobacterium wasabiae WPP163]
 gi|261604472|gb|ACX86958.1| DNA polymerase III, epsilon subunit [Pectobacterium wasabiae
           WPP163]
          Length = 245

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 139/242 (57%), Gaps = 16/242 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNI 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL DKP+++ I  +F DF   + AE + HNA FD+GF++ E + +N+D      
Sbjct: 66  HGISDEFLADKPTYADIADDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRDLPKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L +AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKITDSLFMARKIFPGKRNSLDALCDRYLIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            + F     E +   E  +T+  I   +    +     + EL  H++ +  +   G + +
Sbjct: 184 SLTFSMD-GETQQQNENSETIQRIVRPQSALTVLY-ADEVELLAHEQRLDLIAKKGGSCL 241

Query: 237 WD 238
           W 
Sbjct: 242 WR 243


>gi|71907224|ref|YP_284811.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Dechloromonas aromatica RCB]
 gi|71846845|gb|AAZ46341.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Dechloromonas aromatica RCB]
          Length = 238

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 93/239 (38%), Positives = 133/239 (55%), Gaps = 18/239 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD +   RIIE+  +E+++   T      ++ P  R+    A  +HGI
Sbjct: 1   MRQIVLDTETTGLDPRSGHRIIEVACIEMVNRRFTGHHLHKYINPE-REIDEGAQAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ I  EF +F N   AE I HNA FD+GF+NAEL R+ + P+    + +
Sbjct: 60  TLEFLADKPKFADIADEFLEFIN--GAELIIHNAPFDIGFLNAELDRLGRVPVGTICNGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +A+  HP  RN L++LC+RY I  S R+ HGALLD+ LL+DV++ M  G + +  
Sbjct: 118 IDTLRMAKELHPGKRNSLDALCERYEIDNSSRTLHGALLDTELLADVFLAMTRGQNSLMI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKN----AIW 237
                      E +  +     ++  KPL   R   EE+ EH+  +  + K      IW
Sbjct: 178 -------EPDAEPRPNIGADGQVRERKPLSVRRAAPEEIAEHETVLAAIDKESKGACIW 229


>gi|300724515|ref|YP_003713838.1| DNA polymerase III subunit epsilon [Xenorhabdus nematophila ATCC
           19061]
 gi|297631055|emb|CBJ91741.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Xenorhabdus nematophila ATCC
           19061]
          Length = 249

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 92/245 (37%), Positives = 139/245 (56%), Gaps = 23/245 (9%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +   IIEIGAVE+++   T R F +++ P  R   PEA ++
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRHFHIYIKPE-RLVDPEAFEV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL+DKP F+ I  EF +F   + AE I HNA FD+GF++ E  ++N+D      
Sbjct: 66  HGISDEFLQDKPLFADIADEFIEFI--RGAELIIHNATFDIGFMDYEFSKLNRDIPPTAD 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +AR+  P  RN+L++LC RY I  S R+ HGALLD+ +LSDVY+ M  G +
Sbjct: 124 FCTITDSLMLARKLFPGKRNNLDALCDRYHIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183

Query: 180 QINFGFK---TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GK 233
            + F  +   ++     +  K T P + L           + EEL +H+  +  +   G 
Sbjct: 184 SLAFSMEGEVSSHALVSEIHKITRPQVGL------KVIYASDEELTQHESRLDLVEKKGG 237

Query: 234 NAIWD 238
           + +W 
Sbjct: 238 SCLWR 242


>gi|307730502|ref|YP_003907726.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003]
 gi|307585037|gb|ADN58435.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003]
          Length = 244

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 86/239 (35%), Positives = 133/239 (55%), Gaps = 14/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRI+E+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL DKP F+ I  +F DF   Q A+ I HNA FD+GF++AE   +   P+      I
Sbjct: 60  TTEFLSDKPKFAEIADQFRDFI--QGADLIIHNAPFDIGFLDAEFALLGLPPVSTYCGEI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +  
Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                        +   P +++   +  +    + EE+  H   +  L K     ++W 
Sbjct: 178 DM---LGESHAGGEAHAPRVAIESLE-LVVIAASDEEVAAHQAVLDGLDKAIKGTSVWR 232


>gi|170695448|ref|ZP_02886593.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
 gi|170139639|gb|EDT07822.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
          Length = 247

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 86/239 (35%), Positives = 133/239 (55%), Gaps = 14/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRI+E+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL DKP F+ I  +  DF   Q A+ I HNA FD+GF++AE   +   P+      I
Sbjct: 60  TTEFLSDKPKFADIADQIRDFI--QGADLIIHNAPFDIGFLDAEFALLGLPPVSTYCGEI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G   +  
Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                        +   P +++   D  +    + +EL  H + +  L K     ++W 
Sbjct: 178 DM---LGESHAGGEAHAPRVAIESLD-LVVIAASDDELAAHQEVLDGLDKAIRGTSVWR 232


>gi|119503277|ref|ZP_01625361.1| response regulator receiver domain protein (CheY-like) [marine
           gamma proteobacterium HTCC2080]
 gi|119460923|gb|EAW42014.1| response regulator receiver domain protein (CheY-like) [marine
           gamma proteobacterium HTCC2080]
          Length = 239

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 94/241 (39%), Positives = 139/241 (57%), Gaps = 12/241 (4%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++V D ETTGL+ S+  RIIEIG VEL++   T R F  ++ P  R     AL +HGIT
Sbjct: 3   RQVVLDTETTGLEVSQGHRIIEIGCVELINRRLTGRHFHQYIQPE-RDIDAGALAVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SRI 123
            EFL DKP+F  I ++F  F +   AE I HNA FDVGFI+AEL R N+D         I
Sbjct: 62  PEFLADKPTFDRIANDFVTFID--GAELIIHNAPFDVGFIDAELARFNRDHPSTSALCSI 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL++AR KHP  RN L++LC+RY +  + R+ HGALLD+ +L+DV++ M  G + +  
Sbjct: 120 VDTLTLARSKHPGQRNSLDALCQRYHVDNASRTLHGALLDAEILADVFLIMTGGQTSLGL 179

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWDR 239
             + +E+       + +  +S  ++  P+    T  EL  H+  +  +    G   +W  
Sbjct: 180 HDEPSEEGGSGLGARGIRRLSSERKPLPVIN-ATAAELSRHENRLDQIATHSGGAVLWRE 238

Query: 240 Y 240
           +
Sbjct: 239 H 239


>gi|146307095|ref|YP_001187560.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina ymp]
 gi|145575296|gb|ABP84828.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
          Length = 252

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 94/255 (36%), Positives = 141/255 (55%), Gaps = 13/255 (5%)

Query: 1   MIRKNKM-RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M   N + R +V D ETTG+      RIIEIG VELL    T R F V+L P+ R+    
Sbjct: 1   MTTDNTVNRYVVLDTETTGMPVTDGHRIIEIGCVELLGRRLTGRHFHVYLNPD-REIDEG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115
           A+ +HGIT+E++ DKP F  +  EF++F   + A+ I HNA FDVGFIN E   + +   
Sbjct: 60  AIAVHGITNEYVADKPRFRDVADEFYEFI--KGAQLIIHNAAFDVGFINNEFALLGQSER 117

Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D  D   ++DTL +AR +HP  RN L++LCKRYG+  S+R  HGALLDS +L+DVY+ M
Sbjct: 118 ADVSDYCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSNRELHGALLDSEILADVYLAM 177

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
             G + ++   +  +      ++ T        R +    R +++EL  H   +  + K+
Sbjct: 178 TGGQTHLSLAGEGADSDGSGRQQATPIRRLDAARPRTRVIRASEDELAAHLARLAAIEKS 237

Query: 235 A----IWDRYISSNQ 245
           A    +W +   + +
Sbjct: 238 AGGPSLWAQLEKAPE 252


>gi|209966072|ref|YP_002298987.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW]
 gi|209959538|gb|ACJ00175.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW]
          Length = 227

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 88/232 (37%), Positives = 135/232 (58%), Gaps = 11/232 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+D+   DR++EIG VEL+++  T RT+  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGIDALNGDRVVEIGCVELMNHVATGRTYHQYINPE-RDMPIEAFNVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL  +P+F+ I   F DF   Q++  + HNA FDVGF+NAEL R+    L  +R ID
Sbjct: 60  STEFLSGQPTFAEIVGPFLDFI--QDSPLVIHNATFDVGFLNAELTRLGMRTLPAARAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +ARR+ P +   L++LC+R+ I  S RS HGALLD+ LL++VY++++ GG Q +   
Sbjct: 118 TVVLARRRFPGAPASLDALCRRFEIDNSARSYHGALLDAQLLAEVYLELL-GGRQPDLVL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                +     +   P      R +P       EEL+ H+  ++      +W
Sbjct: 177 APTGAQAAASFRTDRP------RREPRPHAPLPEELEAHEAFLKGFKTPPLW 222


>gi|301155941|emb|CBW15411.1| DNA polymerase III epsilon subunit [Haemophilus parainfluenzae
           T3T1]
          Length = 253

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 85/253 (33%), Positives = 132/253 (52%), Gaps = 16/253 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ P+ R  
Sbjct: 1   MI--NPDRQIVLDTETTGMNQIGAHYEGHCIIEIGAVEMINRKYTGNNFHIYIKPD-RLV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F +I  +F ++   + AE + HNA FDVGF++ E +++  
Sbjct: 58  DPDAIKVHGITDEMLADKPDFKTIAQDFIEYI--RGAELLIHNAPFDVGFMDYEFRKLGL 115

Query: 116 DPLDPSRII--DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           D       +  DTL +AR+ +P  RN L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 DIKTTDICLVTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLS 175

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           M  G + +      +               ++         + T +E+  H   ++ + K
Sbjct: 176 MTGGQTSLFDEDHADISIIQAGANMQDRQSTVNFSQNLKVLQPTDDEIQAHLDFLKLVNK 235

Query: 234 ----NAIWDRYIS 242
                  W    S
Sbjct: 236 KSDGKCFWSIRTS 248


>gi|254707409|ref|ZP_05169237.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|261314895|ref|ZP_05954092.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|261303921|gb|EEY07418.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
          Length = 201

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 88/204 (43%), Positives = 127/204 (62%), Gaps = 4/204 (1%)

Query: 40  TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
           T RTF  F+ P GR+  P+AL +HGI++E L DKP F+ I  EF +F +   A  +AHNA
Sbjct: 1   TGRTFHKFINPQGRQVHPDALAVHGISNEQLLDKPVFAEILDEFLEFID--GARLVAHNA 58

Query: 100 KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
            FD+GFINAEL R+++  +    I+DTL++ARRKHP   N L++LCKRYGI  SHR+ HG
Sbjct: 59  MFDLGFINAELARLDQAEITSEHIVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHG 118

Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT-VPNISLLKRDKPLFTRITK 218
           ALLD+ +L++VYI+++ GG Q   G          + +      + L  R +PL  RI+ 
Sbjct: 119 ALLDAQILAEVYIELI-GGKQTALGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISD 177

Query: 219 EELDEHDKTIQTLGKNAIWDRYIS 242
            E   H   ++ +G  A+W +Y+S
Sbjct: 178 AERAAHAALVEKMGDKAVWKKYLS 201


>gi|218513681|ref|ZP_03510521.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3]
          Length = 229

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 99/191 (51%), Positives = 135/191 (70%), Gaps = 3/191 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DEFLKDK +F+ +  E   FF   +A+WIAHNA FD+GFINAE  RI   P+ P R++DT
Sbjct: 61  DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVVDT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFGF 185
           LS+ARRKHP   N L++LC+RYG+  SHR+KHGALLDS LL++VYI+M+ G  + +  G 
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMIGGRQAALGLGL 178

Query: 186 KTNEDRFFKEE 196
                +  + E
Sbjct: 179 SGQSGQTARGE 189


>gi|187479401|ref|YP_787426.1| DNA polymerase III subunit epsilon [Bordetella avium 197N]
 gi|115423988|emb|CAJ50541.1| DNA polymerase III, epsilon chain [Bordetella avium 197N]
          Length = 243

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 94/239 (39%), Positives = 131/239 (54%), Gaps = 16/239 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTGLD  +  RI+EIG VEL++   T R   ++L P+ R + PEAL +HG+
Sbjct: 1   MRQIIFDTETTGLDPAQGHRIVEIGCVELVNRMVTGRNLHLYLNPD-RDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T  FL DKP F  I   F  F   + AE IAHNA FDV F NAELQ++ +  LD     +
Sbjct: 60  TTAFLSDKPRFGDIAEAFIQFI--EGAELIAHNASFDVKFFNAELQKVGRKTLDNYCASV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L+ AR   P  RN L++LC RYGI+ +HR+ HGALLDS LL++V++ M  G   +  
Sbjct: 118 TDSLAHARTLFPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
               N      +       ++              E+L EH+  +  L    G + +W 
Sbjct: 178 DVDDN------QAGGNRIALAAFDASVLPVVAAAGEDLTEHEAYLAALDKAVGGSCLWR 230


>gi|77458414|ref|YP_347919.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf0-1]
 gi|77382417|gb|ABA73930.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens Pf0-1]
          Length = 252

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 95/249 (38%), Positives = 136/249 (54%), Gaps = 15/249 (6%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 4   RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIAVHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPSR 122
           +EFL  KP F+ +  EF++F N   A+ I HNA FDVGFIN E   + +    D      
Sbjct: 63  NEFLVGKPRFAEVADEFFEFIN--GAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++
Sbjct: 121 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLS 180

Query: 183 FGFKTNEDRF---FKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----A 235
                ++        +   T        R      R T+ EL EH   ++ + K+    A
Sbjct: 181 LAGNASDGNGTGEGADNSATEIRRLPADRQPGRIIRATEAELAEHQVRLEIIAKSAGAPA 240

Query: 236 IWDRYISSN 244
           +W + + + 
Sbjct: 241 LWTQLLEAE 249


>gi|66045009|ref|YP_234850.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255716|gb|AAY36812.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Pseudomonas syringae pv. syringae B728a]
          Length = 259

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 98/257 (38%), Positives = 141/257 (54%), Gaps = 16/257 (6%)

Query: 1   MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  +N   R IV D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   
Sbjct: 1   MALQNLDNRSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---- 114
           A+ +HGIT+EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +     
Sbjct: 60  AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDR 117

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D      I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M
Sbjct: 118 ADITQHCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177

Query: 175 MVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231
             G + ++  G  ++ +   +        I  L  D+      R ++ EL EH+  + T+
Sbjct: 178 TGGQTSLSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTI 237

Query: 232 GKNA----IWDRYISSN 244
            K      +W + + + 
Sbjct: 238 AKACGAPPLWVQMLEAG 254


>gi|206577790|ref|YP_002240302.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342]
 gi|290509928|ref|ZP_06549298.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55]
 gi|206566848|gb|ACI08624.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342]
 gi|289776644|gb|EFD84642.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55]
          Length = 243

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 133/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++N+       
Sbjct: 66  HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNASFDIGFMDYEFGKLNRGIGKTET 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 183

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +    +   E         +    +      + EEL  H+  +   Q  G + +
Sbjct: 184 SMAFSMEGESQQQAGEMGIQR---VVRAASQLRVVYASDEELVNHESRLDLVQKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|302187967|ref|ZP_07264640.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           syringae 642]
 gi|330952814|gb|EGH53074.1| DNA polymerase III subunit epsilon [Pseudomonas syringae Cit 7]
 gi|330972572|gb|EGH72638.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 259

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 98/257 (38%), Positives = 141/257 (54%), Gaps = 16/257 (6%)

Query: 1   MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  +N   R IV D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   
Sbjct: 1   MALQNLDNRSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---- 114
           A+ +HGIT+EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +     
Sbjct: 60  AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDR 117

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D      I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M
Sbjct: 118 ADITQHCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177

Query: 175 MVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231
             G + ++  G  ++ +   +        I  L  D+      R ++ EL EH+  + T+
Sbjct: 178 TGGQTSLSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTI 237

Query: 232 GKNA----IWDRYISSN 244
            K      +W + + + 
Sbjct: 238 AKACGAPPLWVQMLEAG 254


>gi|304320447|ref|YP_003854090.1| putative DNA polymerase III subunit epsilon and related
           3'-5'exonuclease [Parvularcula bermudensis HTCC2503]
 gi|303299349|gb|ADM08948.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Parvularcula bermudensis HTCC2503]
          Length = 245

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 92/243 (37%), Positives = 135/243 (55%), Gaps = 15/243 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD     R++EIGAVE+++ + T RTF V++ P  R     A ++H +
Sbjct: 1   MRQIVFDTETTGLDPLDGHRVVEIGAVEMVNGALTGRTFHVYVNPE-RDMPEAAYRVHKL 59

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PS 121
           + +FL DKP F    I   F+ F   + A  +AHNA FD  F+   L  I        P 
Sbjct: 60  SSQFLADKPIFKDPAIGQAFYQFC--EGAVLVAHNASFDCKFMQHHLDEIGLPWAWGEPG 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYIKMMVGGS 179
            I+DTL IAR++ P S + L++LC+R+GI ++ R    HGALLDS LL++VYI++  GG 
Sbjct: 118 DIVDTLQIARKRFPGSPSSLDALCQRFGIDLTEREAQGHGALLDSRLLAEVYIELT-GGR 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
           Q    F  ++    + + +  P     +R  P    +T EE   H   I  + K+ +W R
Sbjct: 177 QGGLIFDPDQSVGGRRKARGEP---ARQRPGPRPQLLTDEEHAAHAALIGEM-KDPLWAR 232

Query: 240 YIS 242
           Y +
Sbjct: 233 YTA 235


>gi|329900785|ref|ZP_08272589.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549374|gb|EGF33942.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 235

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/239 (38%), Positives = 142/239 (59%), Gaps = 15/239 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +  DR+IEIG VE+++   T + F  +L P  R +   AL +HG+
Sbjct: 1   MRQIVLDTETTGLNPRSGDRVIEIGCVEMINRRLTGKNFHCYLNPE-RDSEEGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T EFL+DKP F+++ +E  D+ +   AE I HNA FDVGF++AE +R++    +     +
Sbjct: 60  TTEFLRDKPKFAAVAAELRDYIS--GAEVIIHNAPFDVGFLDAEFKRLDIPLFNTQVSGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A+  HP  RN L+SLC RYG++ +HR+ HGALLD+ LL++VY+ M  G + ++ 
Sbjct: 118 IDTLVQAKEMHPGKRNSLDSLCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLSM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
                +     +  ++  ++ L+     L    + EEL EH+  +  L K     ++W 
Sbjct: 178 ELDDGD-----QAGESGAHLELVPLADILVLPASAEELGEHELALTALDKEMRGTSLWR 231


>gi|330939732|gb|EGH43019.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 259

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 95/257 (36%), Positives = 141/257 (54%), Gaps = 16/257 (6%)

Query: 1   MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  +N   R +V D ETTG+      RI+EIG VEL+    T R F V+L P+ R++   
Sbjct: 1   MALQNLDNRAVVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---- 114
           A+ +HGIT+EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +     
Sbjct: 60  AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDR 117

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D      ++DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M
Sbjct: 118 ADITQHCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177

Query: 175 MVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231
             G + ++  G  ++ +   +        I  L  D+      R ++ EL EH+  + T+
Sbjct: 178 TGGQTSLSLAGNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAEHEVRMSTI 237

Query: 232 GKNA----IWDRYISSN 244
            K      +W + + + 
Sbjct: 238 AKACGAPPLWVQMLEAG 254


>gi|294141155|ref|YP_003557133.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12]
 gi|293327624|dbj|BAJ02355.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12]
          Length = 242

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 81/242 (33%), Positives = 130/242 (53%), Gaps = 20/242 (8%)

Query: 8   RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+I+ D ETTG++          RIIEIG VE+++   T R +  ++ P  +    EA++
Sbjct: 9   RQIILDTETTGMNQAAGAIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QLIDEEAIQ 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPL 118
           +HGI++E++ +KP F+ I   F +F +   AE +AHNA FD+ F++ E   +        
Sbjct: 68  VHGISNEYVANKPKFAEIAQSFIEFID--GAEVVAHNASFDISFMDHEFGLLRPKGPKTA 125

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D   I+DTL+IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+ M  G 
Sbjct: 126 DICGILDTLAIAKYLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLLMTGGQ 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL--GKNAI 236
           ++ N    T         + +       +R K      + +EL +H+  +  +  G    
Sbjct: 186 TKFNLSGDTGGIGAGGIIRLS------QERTKLKVISASADELAKHEARLDIVAKGGQCA 239

Query: 237 WD 238
           W 
Sbjct: 240 WR 241


>gi|153000540|ref|YP_001366221.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185]
 gi|160875177|ref|YP_001554493.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195]
 gi|217973494|ref|YP_002358245.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223]
 gi|151365158|gb|ABS08158.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185]
 gi|160860699|gb|ABX49233.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195]
 gi|217498629|gb|ACK46822.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223]
 gi|315267371|gb|ADT94224.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678]
          Length = 242

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 82/248 (33%), Positives = 133/248 (53%), Gaps = 20/248 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++          RIIEIG VE+++   T R +  ++ P G+  
Sbjct: 3   IISNASRQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
            PEA+ +HGITDE +  +P F  +  +F +F +   AE +AHNA FDV F++ E   +  
Sbjct: 62  DPEAIAVHGITDERVSKEPRFHQVAQDFINFID--GAEIVAHNANFDVSFMDHEFSLLQP 119

Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 D  +I+DTL IA+  HP  +N+L++LCKRYG+  S R  HGALLD+ +L+DVY+
Sbjct: 120 RGPKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G ++ N   +         ++    +++L           + +EL  H++ +  + 
Sbjct: 180 IMTGGQTKFNLSNEEAGQEAGGIQRFDPQSLNL------KVIGASADELTMHEQRLDLVA 233

Query: 233 K--NAIWD 238
           K    +W 
Sbjct: 234 KSGKCLWR 241


>gi|56479129|ref|YP_160718.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum
           EbN1]
 gi|56315172|emb|CAI09817.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum
           EbN1]
          Length = 239

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 100/238 (42%), Positives = 145/238 (60%), Gaps = 16/238 (6%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD +N DR+IEIG VELL+ + T R + V++ P  R    EA+ +HGI
Sbjct: 1   MRQIVLDTETTGLDWRNGDRVIEIGCVELLNRNLTGRHYHVYINPE-RGIDAEAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T++FL DKP+FS+I +EF DF   ++AE I HNA FDVGF+N EL R+ +  LD   + +
Sbjct: 60  TEDFLADKPTFSAIAAEFEDFI--RDAELIIHNASFDVGFLNHELSRLGRGKLDSLCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +A+ ++P  +  L++LC R+ I  + R+ HGALLD+ LL++VY+ M  G   +  
Sbjct: 118 IDTLKMAKEQNPGKKASLDALCDRHQIDNASRTLHGALLDAELLAEVYLAMTRGQESLIM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237
             +  E      E   V    L+ R      R + EEL EH++ +Q + K      +W
Sbjct: 178 VLE--EPVPGSAEAGGV----LVDRPPLKVLRASGEELAEHERVLQDIAKGTKGTCLW 229


>gi|23010300|ref|ZP_00051037.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 236

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 90/240 (37%), Positives = 140/240 (58%), Gaps = 10/240 (4%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+IV D ETTG D+KN DR+IEIG VEL+++ +T   +   + P  R  S  A  +HGI
Sbjct: 2   LREIVLDTETTGTDAKNGDRLIEIGCVELINHVQTGAYYHQLINPQ-RPVSEGAFAVHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SR 122
           +D  L DKP F+ +   F  F    +A  + HNA FDVGF+N E  ++            
Sbjct: 61  SDAMLADKPVFADVVDAFVAFCG--DARLVIHNAPFDVGFLNMEFAKLGPAAPPLIVLED 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +ARRKHP + N+L++LC RYG+  + R KHGALLD+ +L++VY++++ GG Q +
Sbjct: 119 VVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQTS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
            G    E       +    +  +  R   + +R+T++E   H   +++LG NA+W  Y+ 
Sbjct: 178 LGLSIAEPAGSVAVEAVADSGPIAPRA--MRSRLTEDERLRHVSFVESLGTNAVWRDYLE 235


>gi|288937007|ref|YP_003441066.1| DNA polymerase III subunit epsilon [Klebsiella variicola At-22]
 gi|288891716|gb|ADC60034.1| DNA polymerase III, epsilon subunit [Klebsiella variicola At-22]
          Length = 246

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 133/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E  ++N+       
Sbjct: 69  HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNASFDIGFMDYEFGKLNRGIGKTET 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L+DVY+ M  G +
Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
            + F  +    +   E         +    +      + EEL  H+  +   Q  G + +
Sbjct: 187 SMAFSMEGESQQQAGEMGIQR---VVRAASQLRVVYASDEELVNHESRLDLVQKKGGSCL 243

Query: 237 WD 238
           W 
Sbjct: 244 WR 245


>gi|270263405|ref|ZP_06191674.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13]
 gi|270042289|gb|EFA15384.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13]
          Length = 246

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 132/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R + V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL DKP+F  I  EF DF   +  E + HNA FD+GF++ E + + K       
Sbjct: 66  HGISDEFLADKPTFDQIADEFIDFI--RGGELVIHNASFDIGFMDHEFRMLQKGLPKTDT 123

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I D+L +ARR  P  RN+L++LC RY I  S R+ HGALLD+ +L++VY+ M  G  
Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCGRYEIDNSKRTLHGALLDAEILAEVYLAMTGG-- 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
           Q +  F+   D    +  + +  I +           +  E+  H+  +  +   G + +
Sbjct: 182 QTSMAFQMEGDTQHNDSTQDIQRI-VRPATAMKVVYASDAEVVAHEARLDLVAKKGGSCL 240

Query: 237 WD 238
           W 
Sbjct: 241 WR 242


>gi|325578763|ref|ZP_08148810.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159587|gb|EGC71719.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 253

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/255 (33%), Positives = 132/255 (51%), Gaps = 16/255 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG++      +   IIEIGAVE+++   T   F +++ P+ R  
Sbjct: 1   MI--NPDRQIVLDTETTGMNQIGAHYEGHCIIEIGAVEMINRKYTGNNFHIYIKPD-RLV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F +I  +F ++   + AE + HNA FDVGF++ E +++  
Sbjct: 58  DPDAIKVHGITDEMLADKPDFKTIAQDFIEYI--RGAELLIHNAPFDVGFMDYEFRKLGL 115

Query: 116 DPLDPSRII--DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           D       +  DTL +AR+ +P  RN L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 DIKTTDICLVTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLS 175

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           M  G + +      +               ++         + T +EL  H   I+ + K
Sbjct: 176 MTGGQTSLFDEEHADSSIIQTTANVQDLQSAVNFSQNLKVLQPTDDELQAHLDFIKLVNK 235

Query: 234 ----NAIWDRYISSN 244
                  W     + 
Sbjct: 236 KSDGKCFWSIRTGNE 250


>gi|146282599|ref|YP_001172752.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri A1501]
 gi|145570804|gb|ABP79910.1| DNA polymerase III, epsilon chain [Pseudomonas stutzeri A1501]
 gi|327480856|gb|AEA84166.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri DSM 4166]
          Length = 241

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 85/227 (37%), Positives = 128/227 (56%), Gaps = 9/227 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTG+      RIIEIG VE++    T R + V+L P+ R+    A+ +HGI
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVEVIGRRLTGRHYHVYLQPD-REVDEGAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121
           T+EFL DKP F  I  EF++F   ++A+ + HNA FD+GFIN E   + +    +  D  
Sbjct: 60  TNEFLVDKPRFRDIADEFFEFI--KDAQLVIHNAAFDLGFINNEFALLGQQDRAEITDHC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR +HP  RN L++LCKRYG+  S R  HGALLD+ +L+DV++ M  G + +
Sbjct: 118 TVLDTLLMARERHPGQRNSLDALCKRYGVDNSGRDLHGALLDAEILADVWLTMTGGQTNL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
           +           + +   +  +    R +    R + EEL  H   +
Sbjct: 178 SLAGDGESSDGGRPQPSPIRRLP-ADRPRTAVLRASDEELAAHMARM 223


>gi|126174224|ref|YP_001050373.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155]
 gi|125997429|gb|ABN61504.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155]
          Length = 242

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 82/248 (33%), Positives = 133/248 (53%), Gaps = 20/248 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++          RIIEIG VE+++   T R +  ++ P G+  
Sbjct: 3   IISNANRQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINP-GQAI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
            PEA+ +HGITDE +  +P F  +  +F +F +   AE +AHNA FDV F++ E   +  
Sbjct: 62  DPEAIAVHGITDERVSKEPRFHQVAQDFINFID--GAEIVAHNANFDVSFMDHEFSLLQP 119

Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 D  +I+DTL IA+  HP  +N+L++LCKRYG+  S R  HGALLD+ +L+DVY+
Sbjct: 120 RGPKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G ++ N   +         ++    +++L           + +EL  H++ +  + 
Sbjct: 180 IMTGGQTKFNLSNEEAGQEAGGIQRFDPQSLNL------KVIGASADELTMHEQRLDLVA 233

Query: 233 K--NAIWD 238
           K    +W 
Sbjct: 234 KSGKCLWR 241


>gi|304408611|ref|ZP_07390232.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|307305439|ref|ZP_07585187.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
 gi|304352432|gb|EFM16829.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|306911742|gb|EFN42167.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
          Length = 242

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 82/248 (33%), Positives = 134/248 (54%), Gaps = 20/248 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           I  N  R+++ D ETTG++          RIIEIG VE+++   T R +  ++ P G+  
Sbjct: 3   IISNANRQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINP-GQTI 61

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
            PEA+ +HGITDE +  +P F  +  +F +F +   AE +AHNA FDV F++ E   +  
Sbjct: 62  DPEAIAVHGITDERVSKEPRFHQVAQDFINFID--GAEIVAHNANFDVSFMDHEFSLLQP 119

Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 D  +I+DTL IA+  HP  +N+L++LCKRYG+  S R  HGALLD+ +L+DVY+
Sbjct: 120 RGPKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYL 179

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M  G ++ N   +         ++    +++L           + +EL+ H++ +  + 
Sbjct: 180 IMTGGQTKFNLSNEEAGQEAGGIQRFDPQSLNL------KVIGASADELNMHEQRLDLVA 233

Query: 233 K--NAIWD 238
           K    +W 
Sbjct: 234 KSGKCLWR 241


>gi|289679441|ref|ZP_06500331.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           syringae FF5]
 gi|330975085|gb|EGH75151.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 259

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 96/257 (37%), Positives = 141/257 (54%), Gaps = 16/257 (6%)

Query: 1   MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  +N   R IV D ETTG+      RI+EIG VEL+    T R F V+L P+ R++   
Sbjct: 1   MALQNLDNRSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---- 114
           A+ +HGIT+EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +     
Sbjct: 60  AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDR 117

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D      ++DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M
Sbjct: 118 ADITQHCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177

Query: 175 MVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231
             G + ++  G  ++ +   +        I  L  D+      R ++ EL EH+  + T+
Sbjct: 178 TGGQTSLSLAGNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAEHEVRMSTI 237

Query: 232 GKNA----IWDRYISSN 244
            K      +W + + + 
Sbjct: 238 AKACGAPPLWVQMLEAG 254


>gi|89094533|ref|ZP_01167472.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Oceanospirillum sp. MED92]
 gi|89081269|gb|EAR60502.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Oceanospirillum sp. MED92]
          Length = 236

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/238 (38%), Positives = 138/238 (57%), Gaps = 15/238 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+  +   IIEIG VE+ +   T +T+  ++ P+ R    EA+++HGI
Sbjct: 1   MRQIVLDTETTGLEPSEGHNIIEIGCVEMFNRRLTGKTYHQYIKPD-RDVDAEAIQVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII- 124
           T+EFL+DKP F  +  EF +F   + AE I HNA FD+GF++ EL R        +  + 
Sbjct: 60  TNEFLEDKPKFHEVMEEFVEFV--RGAELIIHNAAFDIGFLDTELDRNGYPERMENFSLV 117

Query: 125 -DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L +AR+KHP  +N+L++LC RYGI  SHR  HGALLDS +L+DVY+ +  G + ++ 
Sbjct: 118 TDSLKLARKKHPGQKNNLDALCNRYGINNSHRELHGALLDSEILADVYLALTGGQTNLSL 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
             + ++        K      L   D     +I++ +  EHDK ++ L K      +W
Sbjct: 178 AGEGDDGEGAGAVIK-----RLSGADDLPLVQISENDQQEHDKFLKMLDKKSGGECLW 230


>gi|330882898|gb|EGH17047.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 259

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 96/248 (38%), Positives = 139/248 (56%), Gaps = 15/248 (6%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSR 122
           +EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +      D      
Sbjct: 68  NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++
Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLS 185

Query: 183 F-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKN----A 235
             G  ++ +   +        I  L  D+      R ++ EL EH+  + T+ K     A
Sbjct: 186 LAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGAPA 245

Query: 236 IWDRYISS 243
           +W + + +
Sbjct: 246 LWVQMLEA 253


>gi|308185776|ref|YP_003929907.1| DNA polymerase III epsilon subunit [Pantoea vagans C9-1]
 gi|308056286|gb|ADO08458.1| DNA polymerase III epsilon subunit [Pantoea vagans C9-1]
          Length = 243

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 88/249 (35%), Positives = 142/249 (57%), Gaps = 18/249 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F ++L P+ R  
Sbjct: 1   MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLV 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI DEFL DKP+FS I  EF D+   + AE + HNA FD+GF++ E  ++N+
Sbjct: 59  DPEAFGVHGIADEFLADKPAFSEIADEFLDYI--RGAELVIHNAPFDIGFMDYEFSKLNR 116

Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                    +I D+L++ARR  P  RN L++LC RY I  + R+ HGALLD+ +L++V++
Sbjct: 117 GIEKTETFCKITDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAEILAEVFL 176

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231
            M  G + ++F  ++   R  + + +++  I +           ++EE+  H+  +  + 
Sbjct: 177 TMTGGQTSLSFLSESESAR--QAQGESIQRI-VRPASALRVVTASEEEVVAHESRLDLVM 233

Query: 232 --GKNAIWD 238
             G + +W 
Sbjct: 234 KKGGSCLWR 242


>gi|163732957|ref|ZP_02140401.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149]
 gi|161393492|gb|EDQ17817.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149]
          Length = 228

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 96/234 (41%), Positives = 148/234 (63%), Gaps = 8/234 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL+ +  T +T+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGKTYHQYINPE-RMMPDEAFQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL+DKP F+ +   F DF    +A+ + HNA FD+ F+NAEL+ +N   +   + ID
Sbjct: 60  GDEFLRDKPKFAEVGQAFLDFIG--DAKLVIHNAAFDIKFLNAELKWMNLPQIPWEQAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR++ P S   L++LC+R+GI  + R+ HGALLDS +L++VY++++ GG Q +FG 
Sbjct: 118 TLAIARKRFPGSPASLDALCRRFGIDNASRTLHGALLDSEILAEVYLELI-GGRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
               +   K    T  + +   R  PL +R+T+EE   H + +  LG +A+W +
Sbjct: 177 S---NIPQKSAGDTSVDWTPRPRPTPLPSRMTEEEAAAHAEFVAKLGDDAVWLK 227


>gi|254361771|ref|ZP_04977906.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica PHL213]
 gi|261494027|ref|ZP_05990530.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261496213|ref|ZP_05992619.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|153093306|gb|EDN74302.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica PHL213]
 gi|261308165|gb|EEY09462.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261310193|gb|EEY11393.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 258

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 89/255 (34%), Positives = 141/255 (55%), Gaps = 17/255 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M  +  +R++V D ETTG++           IIEIGAVE+++   T RT+ V++ P  R+
Sbjct: 1   MTEEKIIRQVVLDTETTGMNMAGGPPQIGHNIIEIGAVEVINRRLTGRTYHVYIKPP-RE 59

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              EA+ +HGIT+EFL+DKP F+ I  EF DF   + AE I HNA FDV F++ E   + 
Sbjct: 60  VDEEAIAVHGITNEFLQDKPVFAEIAEEFLDFI--KGAELIIHNAPFDVAFMDQEFSYLP 117

Query: 115 KDPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             P    +   + D+L +ARR +P  RN+L++LC R GI  S R  HGALLD+ +L+DV+
Sbjct: 118 NPPAKTAEMCTVTDSLQMARRMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVF 177

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           + M  G   +  G +  E      + +   +  +L  D+ +  +   EE + H   ++ +
Sbjct: 178 LMMTGGQISL-LGEEETEVVSEVIDIEEEFSAIVLNADEAIILKANDEEEESHLALLKLI 236

Query: 232 GK----NAIWDRYIS 242
            K    N +W + ++
Sbjct: 237 EKKSKGNCLWTKALT 251


>gi|163801804|ref|ZP_02195701.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
 gi|159174312|gb|EDP59116.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
          Length = 238

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 94/239 (39%), Positives = 140/239 (58%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R IV D ETTG++ +        RIIEIGAVE+++   T R F V+L P+ R+  PEA+ 
Sbjct: 11  RIIVLDTETTGMNLEGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPEAIG 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118
           +HGITDEFL DKP +S +  EF DF   + AE +AHNA FD GF++ E + ++       
Sbjct: 70  VHGITDEFLVDKPDYSHVHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEMLDPAIGKTD 127

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  ++ DTL++A++  P  RN+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G 
Sbjct: 128 DFCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           + + F          K+  +      +  R      R T +E++ H K ++ +  + IW
Sbjct: 188 TSLEF-------NANKKNGEPEGIRRVQGRKALKVLRATADEVEAHQKRLELVNDS-IW 238


>gi|320325171|gb|EFW81239.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 259

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 96/248 (38%), Positives = 139/248 (56%), Gaps = 15/248 (6%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSR 122
           +EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +      D      
Sbjct: 68  NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++
Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLS 185

Query: 183 F-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKN----A 235
             G  ++ +   +        I  L  D+      R ++ EL EH+  + T+ K     A
Sbjct: 186 LAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGAPA 245

Query: 236 IWDRYISS 243
           +W + + +
Sbjct: 246 LWVQMLEA 253


>gi|237803575|ref|ZP_04591160.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331025557|gb|EGI05613.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 257

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 96/249 (38%), Positives = 140/249 (56%), Gaps = 15/249 (6%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   A+ +HGIT
Sbjct: 9   RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSR 122
           +EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +      D      
Sbjct: 68  NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGDQDRSDITRHCS 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G + ++
Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLS 185

Query: 183 F-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGK----NA 235
             G  ++ +   +        I  L  ++      R ++ EL EH+  + T+ K    +A
Sbjct: 186 LAGNASDGNGSGEGSGNRGSEIRRLPANRKPCRVIRASESELAEHEVRMSTIAKASGASA 245

Query: 236 IWDRYISSN 244
           +W + + + 
Sbjct: 246 LWVQMLEAG 254


>gi|296158207|ref|ZP_06841039.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
 gi|295891543|gb|EFG71329.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
          Length = 244

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 86/239 (35%), Positives = 133/239 (55%), Gaps = 14/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+++  DRI+E+G VEL++   T      ++ P  R + P AL +HG+
Sbjct: 1   MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL DKP F  I  +F DF   Q A+ I HNA FD+GF++ E   +   P+      I
Sbjct: 60  TTEFLSDKPKFGEIADQFRDFI--QGADLIIHNAPFDIGFLDVEFALLGLPPVSTYCGEI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL+ A++  P  RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M  G  Q + 
Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                 +     + +  P +++   D  +    + +E   H   +  L K     ++W 
Sbjct: 176 VIDMLGESHAGGDARA-PRVAIDSLD-LVVIAASDDEFAAHQAVLDGLDKAIKGTSVWR 232


>gi|304413386|ref|ZP_07394859.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola
           LSR1]
 gi|304284229|gb|EFL92622.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola
           LSR1]
          Length = 242

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 88/248 (35%), Positives = 137/248 (55%), Gaps = 20/248 (8%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           +     R+IV D ETTGL+      +  R+IEIGAVE+++   T   F V+L P+ R   
Sbjct: 1   MNTATRRQIVLDTETTGLNKVGAHYQGHRVIEIGAVEMVNRRLTGNHFHVYLKPD-RLVD 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA  +HGI+DEFL DKP+F+     F DF   + A+ I HNA FD+GF++ E + + ++
Sbjct: 60  PEAYAIHGISDEFLADKPTFADTAKTFLDFI--RGADLIIHNASFDIGFLDYEFRLLEQN 117

Query: 117 ---PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                    I D+L +AR+  P  RN+LN+LC RY I  S R+ HGALLD+ +L++VY+ 
Sbjct: 118 SAKIETFCTITDSLLLARQLFPGKRNNLNALCDRYHIDNSKRTLHGALLDAEILAEVYLA 177

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDKTIQTL 231
           M  G + ++F  +T++ +   +E+     I  + R            +EL  H   ++ +
Sbjct: 178 MTGGQTSLSFSMETDQQQQNNKEE-----IKPIVRPTSALKIIYANADELATHQALLEGM 232

Query: 232 GK--NAIW 237
            K    +W
Sbjct: 233 VKKGKCLW 240


>gi|85709813|ref|ZP_01040878.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1]
 gi|85688523|gb|EAQ28527.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1]
          Length = 234

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 97/239 (40%), Positives = 143/239 (59%), Gaps = 11/239 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++FD ETTGLD K  DR++EIG VE++   +T R++  +  P  R     A  +HG+
Sbjct: 1   MREVIFDTETTGLDPKTGDRMVEIGCVEMVGRVETGRSYHAYYNPE-RDMPSAAEAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  FL+ KP FS    E  +F    +A  +AHNA FD GF+NAEL+RI ++ +   R++D
Sbjct: 60  SISFLETKPRFSETADELLEFLG--DAPLVAHNAGFDFGFLNAELERIGRESIAMDRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T++IAR+KHP ++  L++LC RYGI  SHR KHGALLD+ LL+ VY+++  GG QI    
Sbjct: 118 TVAIARKKHPGAKLSLDALCTRYGIDRSHRVKHGALLDAELLAQVYVELT-GGRQIGLEL 176

Query: 186 --KTNEDRFFKEEK---KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
              T ED     EK     +   S     +P     ++ EL  H + ++ + K+AIW R
Sbjct: 177 AADTVEDPHAAAEKVVETVIGRRSDQPFREPRPHAASENELARHREFVEGI-KDAIWAR 234


>gi|83594940|ref|YP_428692.1| DNA polymerase III, subunit epsilon [Rhodospirillum rubrum ATCC
           11170]
 gi|83577854|gb|ABC24405.1| DNA polymerase III, epsilon subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 230

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 86/234 (36%), Positives = 138/234 (58%), Gaps = 12/234 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD    DR++EIG +EL+++  +     +++ P  R   PEA ++HG+
Sbjct: 1   MREIVLDTETTGLDPATGDRLVEIGCIELINHMPSGNDLHLYVNPE-RDMPPEAFRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++ FL DKP F+ +  EF  F  E     I HNA FD+ F+NAEL R+ + PL  SR +D
Sbjct: 60  SEAFLADKPLFAEVVDEFLAFIGEDR--LIIHNAAFDMKFLNAELARLKRPPLPMSRALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +A+ + P ++  L++LC+R+G+  S R+KHGAL+D  LL++VY++++ GG +     
Sbjct: 118 TLRMAQARFPGAQASLDALCRRFGVDTSSRTKHGALIDCVLLAEVYLELI-GGREPGLAL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             ++ R     +   P         P     + EEL  H++ ++ + K+ IW R
Sbjct: 177 SADKRRDGAAVQVARP------FRAPRPHAASPEELAAHEEFLKKV-KDPIWRR 223


>gi|322831648|ref|YP_004211675.1| DNA polymerase III, subunit epsilon [Rahnella sp. Y9602]
 gi|321166849|gb|ADW72548.1| DNA polymerase III, epsilon subunit [Rahnella sp. Y9602]
          Length = 245

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 84/242 (34%), Positives = 131/242 (54%), Gaps = 17/242 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +V D ETTG++      +  RIIEIGAVE+++   T R F V+L P+ R   PEA  +
Sbjct: 9   RIVVLDTETTGMNKLGVHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPD-RLVDPEAFGV 67

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL DKP+F+ +  +F ++   +  E + HNA FD+GF++ E   + ++      
Sbjct: 68  HGISDEFLADKPTFADVADDFIEYI--RGGELVIHNATFDIGFMDYEFDMLGRNLPKTET 125

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I D+L++AR+  P  RN+L++L  RY I  S R+ HGALLDS +L++VY+ M  G +
Sbjct: 126 FCKITDSLAMARKLFPGKRNNLDALSDRYLIDNSKRTLHGALLDSEILAEVYLMMTGGQT 185

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236
            I F   T+E                           T +EL  H++ +  +   G + +
Sbjct: 186 SIKF---THEGEQNTGADGLGIQRVARPASGLKVIAATDQELAWHEERLDLVVKKGGSCL 242

Query: 237 WD 238
           W 
Sbjct: 243 WR 244


>gi|300312711|ref|YP_003776803.1| DNA polymerase III subunit epsilon [Herbaspirillum seropedicae
           SmR1]
 gi|300075496|gb|ADJ64895.1| DNA polymerase III, epsilon subunit, protein [Herbaspirillum
           seropedicae SmR1]
          Length = 244

 Score =  228 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 90/239 (37%), Positives = 136/239 (56%), Gaps = 15/239 (6%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL  +N +RI+EIG VE+L+   + +    ++ P  R +   AL +HG+
Sbjct: 1   MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPE-RDSEEGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T EFL DKP+F  I +EF D+   + A+ I HNA FDVGF++AEL  +   P       +
Sbjct: 60  TTEFLADKPTFKQIAAEFLDYV--RGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +D+L +A+  HP  RN L++LC RYGI+ +HR  HGALLD+ LL++VY+ M  G + +  
Sbjct: 118 VDSLQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                ED    E K     + L    + +    ++EEL  H+  +  L K    + +W 
Sbjct: 178 DLGAEEDVSEGEGK-----LELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWR 231


>gi|68172041|ref|ZP_00545326.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998534|gb|EAM85303.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia chaffeensis str. Sapulpa]
          Length = 239

 Score =  228 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 93/240 (38%), Positives = 138/240 (57%), Gaps = 11/240 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M     +R++V D ETTGLD    DR+IEIG VEL+D   T + F  ++ P  R     A
Sbjct: 1   MSYYKGVREVVLDTETTGLDPDGGDRVIEIGCVELIDRVFTGKVFHEYINPE-RDIPYYA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGIT + LKDKP FS I  +F +F +  N   + HNA FD+ FI  EL RINK    
Sbjct: 60  TKIHGITIDMLKDKPKFSEIADKFLEFID--NGILVIHNAGFDIKFIKMELDRINKSYNS 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +++DTL +AR+K P   + L++LC+R+ I++  R  HGALLD+ LL  VY+++M GG 
Sbjct: 118 DFQVVDTLVLARKKFPGVSSTLDALCRRFNISLQDRKFHGALLDATLLGKVYVQLM-GGL 176

Query: 180 QINFGFKTNEDRFFKEE-KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           Q +  F  N +        K   N+ +    +P    +++EE+ +H   ++ + KN IW+
Sbjct: 177 QRSLEFSYNNNVSSASNIDKRCENLCI----EPRIYEVSEEEIKKHKMLLEKI-KNPIWN 231


>gi|114563375|ref|YP_750888.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
 gi|114334668|gb|ABI72050.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
          Length = 242

 Score =  228 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 80/242 (33%), Positives = 134/242 (55%), Gaps = 20/242 (8%)

Query: 8   RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+++ D ETTG++          RIIEIG VE+++   T RT+  ++ P G+    EA++
Sbjct: 9   RQVILDTETTGMNQAGGPIYVGHRIIEIGCVEVINRRLTGRTYHQYINP-GQAIDEEAIQ 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPL 118
           +HGIT++ + ++P F  I  +F DF +   AE +AHNA FDV F++ E  ++        
Sbjct: 68  VHGITNDRVANEPRFHQIAKDFIDFID--GAEIVAHNANFDVSFMDHEFSKLNPIGPKTK 125

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D   I+D+L+IA+R HP  +N+L++LC+RYGI    R+ HGALLD+ +L+DVY+ M  G 
Sbjct: 126 DICSILDSLAIAKRLHPGQKNNLDALCRRYGIDNGRRTYHGALLDAEILADVYLIMTGGQ 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAI 236
            + N       +    +E   + NI     +       + +E+  H++ +  + K    +
Sbjct: 186 IKFNL-----SNEKAGQEGGGIKNIDPSAFN-LKVVGASADEILLHEQRLDLIAKSGKCL 239

Query: 237 WD 238
           W 
Sbjct: 240 WR 241


>gi|163752245|ref|ZP_02159446.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99]
 gi|161327875|gb|EDP99054.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99]
          Length = 240

 Score =  228 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 79/242 (32%), Positives = 130/242 (53%), Gaps = 22/242 (9%)

Query: 8   RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+++ D ETTG++          RIIEIG VE+++   T R +  ++ P  +    EA+ 
Sbjct: 9   RQVILDTETTGMNQGAGAIFLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QLIDEEAIA 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPL 118
           +HGI++E++ +KP F+ I   F +F +   AE +AHNA FD+ F++ E   +        
Sbjct: 68  VHGISNEYVANKPKFAEIAQSFIEFID--GAEVVAHNASFDISFMDHEFGLLQPKGPKTA 125

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D   I+DTL+IA+  HP  +N+L++LCKRYGI  S R  HGALLD+ +L+DVY+ M  G 
Sbjct: 126 DICAILDTLAIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLLMTGGQ 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI-- 236
           +++N    +          +        +R K      + +EL +H+  +  + K  +  
Sbjct: 186 TKLNLSGDSGGAGGIIRLSQ--------ERTKLKVIAASADELAKHEARLDIVAKGGLCA 237

Query: 237 WD 238
           W 
Sbjct: 238 WR 239


>gi|73667124|ref|YP_303140.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia canis str. Jake]
 gi|72394265|gb|AAZ68542.1| DNA polymerase III, epsilon subunit :DNA polymerase 3, epsilon
           subunit [Ehrlichia canis str. Jake]
          Length = 239

 Score =  228 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 93/239 (38%), Positives = 139/239 (58%), Gaps = 9/239 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M     +R++V D ETTGLD    DRIIEIG VEL+D   T + F  ++ P  R     A
Sbjct: 1   MSYYKGVREVVLDTETTGLDPDGGDRIIEIGCVELIDRVFTGKVFHEYINPE-RDIPYYA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGIT + LKDKP FS I  +F +F N  N+  + HNA FD+ FI  EL +I KD   
Sbjct: 60  TKIHGITIDMLKDKPKFSEIADKFLEFVN--NSVLVIHNAGFDIKFIKMELDKIQKDYDS 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +++DTL +AR+K P   + L++LC+R+ I++  R  HGALLD+ LL  VY+++M GG 
Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCRRFNISLQDRKFHGALLDATLLGKVYVQLM-GGL 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           Q +  F  + +     +   + N       +P F  +++EE+ +H   ++ + KN IW+
Sbjct: 177 QRSLDFSYSNNII---DTSNINNQCEDVAIEPRFYEVSEEEITQHKMLLEKI-KNPIWN 231


>gi|119898345|ref|YP_933558.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
 gi|119670758|emb|CAL94671.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 239

 Score =  228 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 95/238 (39%), Positives = 137/238 (57%), Gaps = 16/238 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD +  DR+IEIG VEL++ S T R F V++ P+ R    EA+ +HGI
Sbjct: 1   MRQIVLDTETTGLDWRTGDRVIEIGCVELVNRSLTGRHFHVYINPD-RGIDAEAVAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T+EFL DKP F+ I   F DF   ++AE + HNA FDVGF+N EL  + +  LD   + +
Sbjct: 60  TEEFLADKPRFAGIVEAFEDFV--RDAELVIHNANFDVGFLNCELGLLGRPKLDVLCAGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +A+ ++P  +  L++LC RY I   HR+ HGALLD+ LL++VY+ M  G   +  
Sbjct: 118 IDTLRMAKEQNPGKKASLDALCDRYEIDNGHRTLHGALLDAELLAEVYLAMTRGQESLMI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237
               +E    + E   +P +    R      R T+ E + H   +  + K      +W
Sbjct: 178 AL--DEPAPGQVETDGLPVM----RVGVKVVRATEAECEAHAANLADIAKANKGLCLW 229


>gi|77464814|ref|YP_354318.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Rhodobacter sphaeroides 2.4.1]
 gi|221640733|ref|YP_002526995.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131]
 gi|77389232|gb|ABA80417.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Rhodobacter sphaeroides 2.4.1]
 gi|221161514|gb|ACM02494.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides KD131]
          Length = 229

 Score =  228 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 97/237 (40%), Positives = 142/237 (59%), Gaps = 12/237 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  +  RI+EIGAVEL ++  T RT+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL+DKP F++I   F DF  E  A  + HNA FD+ F+N EL R     L P + +D
Sbjct: 60  GDEFLRDKPVFAAIGRAFLDFVGE--ARLVIHNAAFDMKFLNFELGRAGLPRLAPDQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR++ P +   L++LC+R+G+  S R KHGALLDS +L++VY++++ GG Q +FG 
Sbjct: 118 TLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELI-GGRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            ++        +   P      R +P  L  RIT+EE   H   +  LG  AIW + 
Sbjct: 177 ASS-----AGARPGSPEGEWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIWLKR 228


>gi|332559710|ref|ZP_08414032.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides WS8N]
 gi|332277422|gb|EGJ22737.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides WS8N]
          Length = 229

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 97/237 (40%), Positives = 142/237 (59%), Gaps = 12/237 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  +  RI+EIGAVEL ++  T RT+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL+DKP F++I   F DF  E  A  + HNA FD+ F+N EL R     L P + +D
Sbjct: 60  GDEFLRDKPVFAAIGRAFLDFVGE--ARLVIHNAVFDMKFLNFELGRAGLPRLAPDQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR++ P +   L++LC+R+G+  S R KHGALLDS +L++VY++++ GG Q +FG 
Sbjct: 118 TLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELI-GGRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            ++        +   P      R +P  L  RIT+EE   H   +  LG  AIW + 
Sbjct: 177 ASS-----AGARPGSPEGEWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIWLKR 228


>gi|285017397|ref|YP_003375108.1| DNA polymerase III, epsilon subunit protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472615|emb|CBA15120.1| probable dna polymerase III, epsilon subunit protein [Xanthomonas
           albilineans]
          Length = 244

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 94/239 (39%), Positives = 134/239 (56%), Gaps = 13/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +R++EIGAVELL+   + R F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWKKGNRVVEIGAVELLERRPSGRHFHRYLRPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           T EFL DKP F  +  EF +F +   AE + HNA FD+GF++ EL R+       LD + 
Sbjct: 60  TLEFLADKPEFHEVVDEFLEFID--GAELVIHNASFDLGFLDYELSRLGESYGCILDRAS 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR + P  RN L++LCKR G+  +HR  HGALLD+ +L +VYI +  G  +I 
Sbjct: 118 VVDTLLLARERFPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILCEVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F                    +LL R + L    T  EL+ H   + TL K    A+WD
Sbjct: 178 FALVEETTGKTDAHGVAFDMATLLPRPQVLP---TASELEAHQARLDTLRKKAGRALWD 233


>gi|126463657|ref|YP_001044771.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105321|gb|ABN77999.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 229

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 97/237 (40%), Positives = 142/237 (59%), Gaps = 12/237 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  +  RI+EIGAVEL ++  T RT+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL+DKP F++I   F DF  E  A  + HNA FD+ F+N EL R     L P + +D
Sbjct: 60  GDEFLRDKPVFAAIGRAFLDFVGE--ARLVIHNAAFDMKFLNFELGRSGLPRLAPDQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR++ P +   L++LC+R+G+  S R KHGALLDS +L++VY++++ GG Q +FG 
Sbjct: 118 TLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELI-GGRQPDFGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            ++        +   P      R +P  L  RIT+EE   H   +  LG  AIW + 
Sbjct: 177 ASS-----AGARPGSPEGEWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIWLKR 228


>gi|221134302|ref|ZP_03560607.1| DNA polymerase III, epsilon subunit [Glaciecola sp. HTCC2999]
          Length = 240

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 93/247 (37%), Positives = 132/247 (53%), Gaps = 22/247 (8%)

Query: 7   MRKIVFDIETTGLDSK-------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MR+IV D ETTG+  +         RIIEIG VEL+D   T   + V++ P  +   PEA
Sbjct: 1   MRQIVLDTETTGMSRESGEHFTHGHRIIEIGCVELVDRKLTGNHYHVYINPQ-QDIDPEA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +HGIT+EFL+DKP F  I   F DF +   AE + HNA FDVGF++ E        L 
Sbjct: 60  IAVHGITNEFLEDKPLFKEIAQGFIDFID--GAELVIHNAPFDVGFMDLEFALNPATALT 117

Query: 120 P----SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                  ++DTL +A++  P  RN+L++LC+ YGI  SHR  HGALLD+ +L+DVY+ M 
Sbjct: 118 RTEKFCTVLDTLVLAKKMRPGQRNNLDALCREYGIDNSHRDLHGALLDAEILADVYLLMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---G 232
            G   ++    T     F   +K  P  S LK         T +EL EH+  +  +    
Sbjct: 178 GGQETLSLETGTKSSSGFDNVEKLAPRTSALK-----IIHATADELTEHESRLDIVEQAS 232

Query: 233 KNAIWDR 239
            N ++ +
Sbjct: 233 GNCLYRQ 239


>gi|296284843|ref|ZP_06862841.1| DNA polymerase III epsilon subunit [Citromicrobium bathyomarinum
           JL354]
          Length = 240

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 93/238 (39%), Positives = 135/238 (56%), Gaps = 10/238 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTG+D +   R++EIG VEL+D   T  TF  +  P  R    EA  +HG+
Sbjct: 8   MREIIFDTETTGIDPRQGHRMVEIGCVELVDRMPTGETFHAYYNPE-RDMPAEAEAIHGL 66

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL DKP F+    EF DF  +     +AHNA FD  F+NAEL+   ++P+  +R ID
Sbjct: 67  SAQFLADKPRFADAVDEFLDFVRDDM--LVAHNAGFDFAFLNAELELCTREPICLTRKID 124

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +ARRK+P  ++ L++LC RYG+  SHR  HGALLD+ LL+ VYI++  GG QI  G 
Sbjct: 125 TLEMARRKNPGGKHSLDALCSRYGVDRSHRVFHGALLDAELLAQVYIELT-GGRQIAMGL 183

Query: 186 --KTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             +  E      E +    +    R +        +++EL  H   +  + +  IW R
Sbjct: 184 IGELAEGDTAPAEPELAAMLPSGDRPRRPARPHSASEQELAAHAAFLDRMTR-PIWHR 240


>gi|71733799|ref|YP_273952.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|289627521|ref|ZP_06460475.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649928|ref|ZP_06481271.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298486280|ref|ZP_07004343.1| DNA polymerase III epsilon subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554352|gb|AAZ33563.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298159287|gb|EFI00345.1| DNA polymerase III epsilon subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330868357|gb|EGH03066.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330985658|gb|EGH83761.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331012696|gb|EGH92752.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 259

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 99/256 (38%), Positives = 142/256 (55%), Gaps = 16/256 (6%)

Query: 1   MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  +N   R IV D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   
Sbjct: 1   MALQNLDNRSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---- 114
           A+ +HGIT+EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +     
Sbjct: 60  AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDR 117

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D      I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M
Sbjct: 118 ADITQHCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177

Query: 175 MVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231
             G + ++  G  ++ +   +        I  L  D+      R ++ EL EH+  + T+
Sbjct: 178 TGGQTSLSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTI 237

Query: 232 GKN----AIWDRYISS 243
            K     A+W + + +
Sbjct: 238 AKASGAPALWVQMLEA 253


>gi|302381472|ref|YP_003817295.1| DNA polymerase III subunit epsilon [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192100|gb|ADK99671.1| DNA polymerase III, epsilon subunit [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 247

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 87/235 (37%), Positives = 133/235 (56%), Gaps = 8/235 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG D +  DR+IE+G +E+LD   T RTF  F+ P  R    +A+++HGIT
Sbjct: 3   REIVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPE-RLIPADAIRVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +KD P F+ I  +  DF    +A  IAHNA+FD  FI+ E  R     L  +R IDT
Sbjct: 62  DDKVKDAPKFAQIVVDLMDFIG--DAPVIAHNAQFDRNFIDHECGRCGHPLLHETRWIDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +A+++ P   N L++LCKRY I++  R+ HGAL+D+ LL++VY+++  GG +      
Sbjct: 120 LQLAQKRFPGMANSLDALCKRYKISLVDRTLHGALIDARLLAEVYLEL-KGGKERVLDLS 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-AIWDRY 240
           +  +              L  R +PL  R+   E + H   +    K+ ++W+ Y
Sbjct: 179 SRRESVAAAAHAAAGGYGL--RPRPLAPRLHASEGEAHAAFLAATLKDLSLWEGY 231


>gi|307610085|emb|CBW99626.1| hypothetical protein LPW_13941 [Legionella pneumophila 130b]
          Length = 233

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 95/232 (40%), Positives = 138/232 (59%), Gaps = 10/232 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTG+  +   R+IEIG +EL+D   T + F ++L P  R+    A ++HGI
Sbjct: 1   MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLDPSRI 123
           + EFL+DKP F  I +EF  F   + +E I HNA FDVGF+N+EL+  + NK   D  RI
Sbjct: 60  STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR KHP  RN L++LCKRY I   +R  HGALLD+ +L+ VY+ M  G S +  
Sbjct: 118 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
              T  +  F + K     I  L   KP+  +  +EEL +H   ++ + K +
Sbjct: 176 --FTEVESSFSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKS 225


>gi|329894914|ref|ZP_08270713.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088]
 gi|328922643|gb|EGG29978.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088]
          Length = 247

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 96/250 (38%), Positives = 136/250 (54%), Gaps = 18/250 (7%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ S   R+IEIG VEL++   + R F  ++ P  R+  P A+++HGI
Sbjct: 1   MRQIVLDTETTGLETSDGHRVIEIGCVELINRRLSGRHFHQYINPQ-REVDPGAMEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----- 120
           ++EFL+DKP FS+I  EF +F   + AE I HNA FD+GF++ EL   ++    P     
Sbjct: 60  SNEFLQDKPLFSAIADEFLEFI--KGAELIIHNAPFDIGFLDYELSLESERRAAPMPTVE 117

Query: 121 --SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               +IDTL +ARRKHP  RN L++LC RY +  S R  HGALLDS +L+DVY+ M  G 
Sbjct: 118 SLCGVIDTLVMARRKHPGQRNTLDALCTRYDVDNSSRDLHGALLDSEILADVYLAMTGG- 176

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKN-- 234
            Q     ++      ++       I  ++R            EE   H+  +  L     
Sbjct: 177 -QTALTLQSENREGGEQSNWVTGEIVRVQRAGLSLPVVPANAEESQAHEAYLDLLDNKSD 235

Query: 235 -AIWDRYISS 243
            A+W R   S
Sbjct: 236 GALWRRLDES 245


>gi|304395367|ref|ZP_07377250.1| DNA polymerase III, epsilon subunit [Pantoea sp. aB]
 gi|304356661|gb|EFM21025.1| DNA polymerase III, epsilon subunit [Pantoea sp. aB]
          Length = 243

 Score =  227 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 88/249 (35%), Positives = 142/249 (57%), Gaps = 18/249 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F ++L P+ R  
Sbjct: 1   MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLV 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            PEA  +HGI DEFL DKP+FS I  EF D+   + AE + HNA FD+GF++ E  ++N+
Sbjct: 59  DPEAFGVHGIADEFLADKPAFSDIADEFLDYI--RGAELVIHNAPFDIGFMDYEFSKLNR 116

Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                    +I D+L++ARR  P  RN L++LC RY I  + R+ HGALLD+ +L++V++
Sbjct: 117 GIEKTETFCKITDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAEILAEVFL 176

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231
            M  G + ++F  ++   R  + + +++  I +           ++EE+  H+  +  + 
Sbjct: 177 TMTGGQTSLSFLSESESAR--EAQGESIQRI-VRPASALRVVTASEEEVVAHESRLDLVM 233

Query: 232 --GKNAIWD 238
             G + +W 
Sbjct: 234 KKGGSCLWR 242


>gi|294009991|ref|YP_003543451.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S]
 gi|292673321|dbj|BAI94839.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S]
          Length = 230

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 94/232 (40%), Positives = 136/232 (58%), Gaps = 7/232 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTG D    DR++EIG +ELL+   T RTF  +  P  R     A  +HG+
Sbjct: 1   MREIIFDTETTGFDPASGDRLVEIGCIELLNRVPTGRTFHAYYNPQ-RSMPAAAEAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D FL+DKP FS    E   F   +++  +AHNA+FD GF+N EL+      +  +R+ID
Sbjct: 60  SDSFLRDKPLFSHGVEELLAFL--EDSHLVAHNARFDFGFLNHELRLCGLPEVSMARMID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T++IAR+ HP +++ L++LC RYGI  SHR KHGALLD+ LL+ +YI++  GG QI  G 
Sbjct: 118 TVAIARQLHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAQLYIELT-GGRQIGLGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
              E++     +          R   +F   + EEL+ H   + TL K  +W
Sbjct: 177 AQEEEKRVANMELAAEVAVRPVRPARVFA-ASAEELERHAAFVATLEK-PLW 226


>gi|330889978|gb|EGH22639.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 259

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 99/256 (38%), Positives = 142/256 (55%), Gaps = 16/256 (6%)

Query: 1   MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  +N   R IV D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   
Sbjct: 1   MALQNLDNRSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---- 114
           A+ +HGIT+EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +     
Sbjct: 60  AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDR 117

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D      I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M
Sbjct: 118 ADITLHCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177

Query: 175 MVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231
             G + ++  G  ++ +   +        I  L  D+      R ++ EL EH+  + T+
Sbjct: 178 TGGQTSLSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTI 237

Query: 232 GKN----AIWDRYISS 243
            K     A+W + + +
Sbjct: 238 AKASGAPALWVQMLEA 253


>gi|54294270|ref|YP_126685.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens]
 gi|53754102|emb|CAH15575.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens]
          Length = 233

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 95/232 (40%), Positives = 138/232 (59%), Gaps = 10/232 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTG+  +   R+IEIG +EL+D   T + F ++L P  R+    A ++HGI
Sbjct: 1   MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLDPSRI 123
           + EFL+DKP F  I +EF  F   + +E I HNA FDVGF+N+EL+  + NK   D  RI
Sbjct: 60  STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR KHP  RN L++LCKRY I   +R  HGALLD+ +L+ VY+ M  G S +  
Sbjct: 118 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
              T  +  F + K     I  L   KP+  +  +EEL +H   ++ + K +
Sbjct: 176 --FTEVESSFSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKS 225


>gi|330959421|gb|EGH59681.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 259

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 98/257 (38%), Positives = 143/257 (55%), Gaps = 16/257 (6%)

Query: 1   MIRKNKM-RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M+ KN   R +V D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   
Sbjct: 1   MVDKNGTHRAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115
           A+ +HGIT+EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +     
Sbjct: 60  AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDK 117

Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D      I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L++VY+ M
Sbjct: 118 ADITRHCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILAEVYLAM 177

Query: 175 MVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231
             G + ++  G  ++ +   +        I  L  D+      R ++ EL EH+  + T+
Sbjct: 178 TGGQTSLSLAGNASDGNGSGEGGSSRGSEIRRLPADRLPCRVIRASESELAEHEVRMNTI 237

Query: 232 GKN----AIWDRYISSN 244
            K     A+W + + + 
Sbjct: 238 AKASGAPALWVQMLEAE 254


>gi|73541877|ref|YP_296397.1| DNA polymerase III subunit epsilon [Ralstonia eutropha JMP134]
 gi|72119290|gb|AAZ61553.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
          Length = 240

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 87/238 (36%), Positives = 129/238 (54%), Gaps = 15/238 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR+IEIG VEL++   T R    ++ P  R     A+ +HGI
Sbjct: 4   MRQIVLDTETTGLNAATGDRLIEIGCVELVNRRLTGRHLHFYVNPE-RDIDEGAIAVHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ + +E  DF   Q+AE I HNA+FD+GF++ E + +   P       +
Sbjct: 63  TVEFLADKPKFAEVVNEVRDFV--QDAELIIHNAQFDLGFLDMEFRLLGLPPFREHVGSV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  AR+  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G + +  
Sbjct: 121 IDTLLEARQMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLVI 180

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237
                 +       +     S L          ++ E+ EH   ++ L    G   +W
Sbjct: 181 DMLDGAEAADGSVAE-----SDLSHIVLPVLYASEAEVSEHLAVLKQLDKASGGKTVW 233


>gi|209364170|ref|YP_001425094.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway
           5J108-111]
 gi|212213173|ref|YP_002304109.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212]
 gi|212218153|ref|YP_002304940.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154]
 gi|215918940|ref|NP_819360.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493]
 gi|206583825|gb|AAO89874.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493]
 gi|207082103|gb|ABS77173.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway
           5J108-111]
 gi|212011583|gb|ACJ18964.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212]
 gi|212012415|gb|ACJ19795.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154]
          Length = 236

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 93/241 (38%), Positives = 134/241 (55%), Gaps = 16/241 (6%)

Query: 5   NKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N MR+IV D ETTGL  +   RIIEIGA+E+++   T      ++ P  R    +A+++H
Sbjct: 3   NLMRQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPE-RSIERDAIEIH 61

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DP 120
           GITD FL DKP F  I +E   F   + AE I HNA FDVGF+N EL+   +        
Sbjct: 62  GITDSFLIDKPLFKDIATELISFL--KGAELIIHNAPFDVGFLNHELKLTGQSFKTLTHY 119

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +++DTL+IAR+KHP   N+L++LC+RY +  S+R  HGALLD+ LL+ VY+ M  G + 
Sbjct: 120 CQVLDTLTIARQKHPGQHNNLDALCRRYHVDNSNRDYHGALLDAELLAQVYLLMTGGQTV 179

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLL-KRDKPLFTRITKEELDEHDKTIQTLGKN--AIW 237
           +       E + F    ++V    L   RD     R    E + H   +Q L +N   +W
Sbjct: 180 L------FEQQGFAVASRSVSVRPLGTDRDSLSVIRANAAETEAHRAFLQLLTENGLCLW 233

Query: 238 D 238
           +
Sbjct: 234 N 234


>gi|52425625|ref|YP_088762.1| DNA polymerase III subunit epsilon [Mannheimia succiniciproducens
           MBEL55E]
 gi|52307677|gb|AAU38177.1| DnaQ protein [Mannheimia succiniciproducens MBEL55E]
          Length = 260

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 91/249 (36%), Positives = 138/249 (55%), Gaps = 16/249 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+I+ D ETTG++      +   IIEIGAVE+++   T R   +++ P+ R   PEA+K+
Sbjct: 9   RQILLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPD-RLVDPEAIKV 67

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDP 120
           HGITDE L+DKP F+ +  EF DF   + AE + HNA FDVGF++ E ++ + D    D 
Sbjct: 68  HGITDEMLEDKPVFTEVAQEFIDFI--KGAELLIHNAPFDVGFMDYEFRKHHIDVKTADI 125

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             + DTL +AR+ +P  RN L++LC R GI  + R  HGALLD+ +L DVY+ M  G + 
Sbjct: 126 CSVTDTLQLARQMYPGKRNSLDALCDRLGIDNTKRVLHGALLDAEILGDVYLVMTGGQTS 185

Query: 181 I-NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NA 235
           + +       D    +      N   +     L    T EEL  H + I+ + K    N 
Sbjct: 186 LFDDNEPELADIHSAKAHILAQNADKVAHHLSLLQ-PTDEELQAHLEYIKLINKKSKDNC 244

Query: 236 IWDRYISSN 244
           +W++ + S+
Sbjct: 245 LWEKRLGSD 253


>gi|294340001|emb|CAZ88365.1| DNA polymerase III subunit epsilon [Thiomonas sp. 3As]
          Length = 239

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 88/245 (35%), Positives = 139/245 (56%), Gaps = 17/245 (6%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL+    DRIIE+  VEL +   T + +  +L P+ R + P+ALK+HG+T
Sbjct: 3   RQIVLDTETTGLNPASGDRIIEVAGVELFNRRLTGKHYHAYLNPD-RASHPDALKVHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-- 124
           +EFL DKP F+ I  +  +F   ++AE I HNA FD  F++AEL+R+N+        +  
Sbjct: 62  EEFLSDKPRFAQIADDLLEFV--RDAEIIIHNAPFDCAFLDAELERLNRPAFKQHVPLVT 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++A+ + P   N+L++LCKR+GI  +HR+ HGALLD+ LL++VY+ +  G   +   
Sbjct: 120 DTLAMAKLQFPGKFNNLDALCKRFGIDNAHRTLHGALLDAELLAEVYLSLTRGQESLVID 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRY 240
            +T + +      +       L     L    + +E   H+  +Q L K     +IW   
Sbjct: 180 LETPQQQMSVASHR-------LDHFSLLVRAPSSDEQAAHEAFLQLLDKKSQGKSIWRPG 232

Query: 241 ISSNQ 245
             ++Q
Sbjct: 233 AEASQ 237


>gi|194364623|ref|YP_002027233.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
           R551-3]
 gi|194347427|gb|ACF50550.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 243

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 91/239 (38%), Positives = 130/239 (54%), Gaps = 13/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +RI+EIG VEL     T   +  ++ P+  +    A ++ G+
Sbjct: 1   MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDC-EFEQGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           T EFL DKP F+ I  EF  F +   AE I HNA FD+GF++ EL  +        D   
Sbjct: 60  TLEFLDDKPDFAQIADEFLAFID--GAELIIHNAAFDLGFLDNELSLLGPQYGKITDRCT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDTL +AR + P  RN L++LC+R G+  SHR+ HG LLD+ +L DVYI +  G  +I 
Sbjct: 118 VIDTLVMARERFPGQRNSLDALCRRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           FG   +E        +      LL R + +    T  EL+ H   ++ L K    A+WD
Sbjct: 178 FGLGDDEAGAAGAALQAFDTSKLLPRPRVV---ATPSELEAHTARLERLRKKAGHALWD 233


>gi|226939810|ref|YP_002794883.1| DnaQ [Laribacter hongkongensis HLHK9]
 gi|226714736|gb|ACO73874.1| DnaQ [Laribacter hongkongensis HLHK9]
          Length = 240

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 80/240 (33%), Positives = 131/240 (54%), Gaps = 17/240 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+ D ETTGLD ++ R+IE+  +E+++   T R   +++ P  R   P+A ++HGI+
Sbjct: 1   MRQIILDTETTGLDPQSHRLIEVAGLEMVNRKLTGRHLHLYIHPQ-RDIDPDAQRVHGIS 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124
            + L+ KP F ++  E  DF   ++AE I HNA FD+GF+NAE  R+           +I
Sbjct: 60  LDMLEGKPVFKAVAGEIADFL--RDAELIIHNAAFDIGFLNAEFARVGLPATQKVAGNVI 117

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR   P  RN+L++LC R+ I  S+R+ HGAL+D  LL+DVY+ M  G   +   
Sbjct: 118 DTLAMAREIFPGKRNNLDALCDRFDIDRSNRTLHGALIDCELLADVYLAMTRGQESLEMA 177

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRY 240
            + ++             + L  R   +  + ++ E   H + ++ L K      +W  Y
Sbjct: 178 IEPDQGEGG--------TLRLGNRKPLVVQKASEAECAVHSRYLELLDKKAGGPCVWRDY 229


>gi|307297035|ref|ZP_07576851.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum
           L-1]
 gi|306877561|gb|EFN08789.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum
           L-1]
          Length = 230

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 92/232 (39%), Positives = 133/232 (57%), Gaps = 7/232 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTG D    DR++EIG +EL +   T RTF  +  P  R     A  +HG+
Sbjct: 1   MREIIFDTETTGFDPASGDRLVEIGCIELFNRVPTGRTFHAYYNPQ-RSMPAAAEAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D FL+DKP F     E   F   +++  +AHNA+FD GF+N EL+      +   R+ID
Sbjct: 60  SDGFLRDKPLFGHGVQELLAFL--EDSHLVAHNARFDFGFLNHELKLCGLPEVSMDRMID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T++IAR+ HP +++ L++LC RYGI  SHR KHGALLD+ LL+ +YI++  GG QI  G 
Sbjct: 118 TVAIARQIHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAQLYIELT-GGRQIGLGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
              E++     +          R   +F   + EEL+ H   + TL K  +W
Sbjct: 177 AQEEEKLIVNMELAAKAAVRPVRPARVFA-ASAEELERHAAFVATLEK-PLW 226


>gi|332528386|ref|ZP_08404380.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC
           19624]
 gi|332042149|gb|EGI78481.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC
           19624]
          Length = 252

 Score =  225 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 92/244 (37%), Positives = 137/244 (56%), Gaps = 15/244 (6%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL ++  DRIIE+G VELL+   +      +  P GR +  +AL++HGI
Sbjct: 1   MRQIVLDTETTGLSAEGGDRIIELGCVELLNRKLSGNNLHFYFNP-GRDSHEDALRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           ++EFL+DKP F+ +  E   +   Q AE I HNA FDVGF+N EL+ I K  L      I
Sbjct: 60  SNEFLRDKPKFAEVAQEILAYL--QGAELIIHNAAFDVGFLNKELELIGKPALHTFVGGI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL++A+  +P  RN L++LC R G+  S R+ HGALLD+ LL+DVYI M  G   +  
Sbjct: 118 TDTLAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINMTRGQDALLI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDR 239
                 ++     ++    I L + D P+    +++EL  H   +  + K      +W +
Sbjct: 178 DAGDAVEQAGAGFER----IDLSRFDLPVL-HASEQELAAHGDVLAQIDKACGGKTVWLQ 232

Query: 240 YISS 243
            + +
Sbjct: 233 RVDA 236


>gi|296135837|ref|YP_003643079.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
 gi|295795959|gb|ADG30749.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
          Length = 239

 Score =  225 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 87/245 (35%), Positives = 137/245 (55%), Gaps = 17/245 (6%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL+    DRIIE+  VEL +   T + +  +L P+ R + P+ALK+HG+T
Sbjct: 3   RQIVLDTETTGLNPASGDRIIEVAGVELFNRRLTGKHYHAYLNPD-RASHPDALKVHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-- 124
           +EFL DKP F  I  +  +F   ++AE I HNA FD  F++AEL+R+N+        +  
Sbjct: 62  EEFLSDKPRFEQIADDLLEFV--RDAEVIIHNAPFDCAFLDAELERLNRPAFRQHVPLVT 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++A+ + P   N+L++LCKR+GI  +HR+ HGALLD+ LL++VY+ +  G   +   
Sbjct: 120 DTLAMAKLQFPGKFNNLDALCKRFGIDNTHRTLHGALLDAELLAEVYLSLTRGQESLVID 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRY 240
            +T + +      +       L          + +E   H+  +Q L K     +IW   
Sbjct: 180 LETPQQQMSVASHR-------LDHFSLPVRAPSSDEQAAHEAFLQLLDKKSQGKSIWRPG 232

Query: 241 ISSNQ 245
             ++Q
Sbjct: 233 AEASQ 237


>gi|71276291|ref|ZP_00652569.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Dixon]
 gi|71898480|ref|ZP_00680652.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|170730488|ref|YP_001775921.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M12]
 gi|71162899|gb|EAO12623.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Dixon]
 gi|71731793|gb|EAO33852.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|167965281|gb|ACA12291.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 239

 Score =  225 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 97/243 (39%), Positives = 136/243 (55%), Gaps = 13/243 (5%)

Query: 3   RKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            +NK R+IV D ETTGL+ SK +RI+EIGAVELLD   +   F  +L P+       A +
Sbjct: 1   MRNKKRQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPD-VSFESGAQE 59

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118
           + G+T EFL DKP FS I  EF  + N   AE I HNA FD+GF++ EL R+        
Sbjct: 60  VTGLTMEFLADKPEFSMIADEFLAYIN--GAELIIHNAAFDLGFLDYELSRLGSQYGKIT 117

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D + ++DTL +AR ++P  RN L++LCKR G+  +HR  HGALLD+ +L+DVYI +  G 
Sbjct: 118 DRASVLDTLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTCGQ 177

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--- 235
            +I F    +                LL R       +++ EL+ H+  +  L K A   
Sbjct: 178 EEIGFALPESSCGGVDAASAAFMPDVLLTRP---CVVVSQSELEAHEARLAKLRKIAGHV 234

Query: 236 IWD 238
           +WD
Sbjct: 235 LWD 237


>gi|294675627|ref|YP_003576242.1| DNA polymerase III subunit epsilon [Rhodobacter capsulatus SB 1003]
 gi|294474447|gb|ADE83835.1| DNA polymerase III, epsilon subunit [Rhodobacter capsulatus SB
           1003]
          Length = 231

 Score =  225 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 97/235 (41%), Positives = 143/235 (60%), Gaps = 6/235 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  +  RI+EIGAVEL+++  T RT+  ++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGFEPSEGHRIVEIGAVELMNHVPTGRTYHQYINPE-RAMPQEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F +I  +F DF  + +++ + HNA FD+ F+NAEL  + K  L   R +D
Sbjct: 60  GDDFLRDKPKFGAIAQDFLDFIGD-DSKLVIHNAAFDMKFLNAELGWVQKPLLPMDRALD 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++ARRK P S   L++LC+R+GI  S R+ HGALLDS +L++VY++++ GG Q  FG 
Sbjct: 119 TLAMARRKFPGSPATLDALCRRFGIDNSARTLHGALLDSEILAEVYLELI-GGRQPGFGL 177

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
               D    +   +        R  PL  R+T+ E + H   +  LG+ AIW R 
Sbjct: 178 NI--DPVQAKSAVSSTEWRPRPRPVPLPPRLTEAEAEAHAAFVAKLGEGAIWKRR 230


>gi|15838748|ref|NP_299436.1| DNA polymerase III subunit epsilon [Xylella fastidiosa 9a5c]
 gi|9107294|gb|AAF84956.1|AE004030_2 DNA polymerase III, epsilon chain [Xylella fastidiosa 9a5c]
          Length = 239

 Score =  225 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 98/243 (40%), Positives = 141/243 (58%), Gaps = 13/243 (5%)

Query: 3   RKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            +NK R+IV D ETTGL+ SK +RI+EIGAVELLD   +   F  +L P+       A +
Sbjct: 1   MRNKKRQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPD-VSFESGAQE 59

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118
           + G+T EFL DKP FS I  EF  + N   AE I HNA FD+GF++ EL R+        
Sbjct: 60  VTGLTMEFLADKPEFSMIADEFLAYIN--GAELIIHNAAFDLGFLDYELSRLGSQYGKIT 117

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D + ++DTL +AR ++P  RN L++LCKR G+  +HR  HGALLD+ +L+DVYI +  G 
Sbjct: 118 DRASVLDTLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQ 177

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--- 235
            +I  GF   E      +  +V  +  +   +P    +++ EL+ H+  +  L K A   
Sbjct: 178 EEI--GFALPESSRGGVDAASVAFMPDVLLTRPCVV-VSQSELEAHEARLAKLRKIAGHV 234

Query: 236 IWD 238
           +WD
Sbjct: 235 LWD 237


>gi|54297294|ref|YP_123663.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris]
 gi|53751079|emb|CAH12490.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris]
          Length = 233

 Score =  225 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 94/232 (40%), Positives = 137/232 (59%), Gaps = 10/232 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTG+  +   R+IEIG +EL+D   T + F ++L P  R+    A ++HGI
Sbjct: 1   MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLDPSRI 123
           + EFL+DKP F  I +EF  F   + +E I HNA FDVGF+N+EL+  + NK   D  RI
Sbjct: 60  STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR KHP  RN L++LCKRY I   +R  HGALLD+ +L+ VY+ M  G S +  
Sbjct: 118 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
              T  +    + K     I  L   KP+  +  +EEL +H   ++ + K +
Sbjct: 176 --FTEVESSLSQSKIKTQEIKSLSLKKPVIMKANEEELIQHQSFVEFISKKS 225


>gi|90407281|ref|ZP_01215467.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3]
 gi|90311564|gb|EAS39663.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3]
          Length = 236

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 92/238 (38%), Positives = 134/238 (56%), Gaps = 19/238 (7%)

Query: 8   RKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R++V D ETTG++         RIIEIG VE+++   T R + V+L P+ R+  PEA+ +
Sbjct: 8   RQVVLDTETTGMNKDGTIYLGHRIIEIGCVEVINRRLTGRHYHVYLQPD-REVDPEAVTV 66

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGITDEFL+DKP F+ I  +F DF   + A+ + HNA FDVGF++ E + +NK       
Sbjct: 67  HGITDEFLQDKPHFADIADDFIDFI--RGADLVIHNAPFDVGFMDQEFRFLNKKTQPTEE 124

Query: 123 I---IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           I    DTL +A++  P  RN+L+ LC RYGI   HR+ HGALLD+ +L+DVY+ M  G S
Sbjct: 125 IATVTDTLVMAKKMFPGKRNNLDILCDRYGINTKHRTLHGALLDAEILADVYLLMSGGQS 184

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           ++N     +       + +T  N            R T  E   H + +Q +  N +W
Sbjct: 185 KLNLSDDLDNMDSHTRQPRTSNN-------PLCIIRATAAENKAHIERLQLIKDN-LW 234


>gi|153208787|ref|ZP_01947019.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161831371|ref|YP_001596268.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331]
 gi|165920933|ref|ZP_02219603.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334]
 gi|120575749|gb|EAX32373.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161763238|gb|ABX78880.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331]
 gi|165916781|gb|EDR35385.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334]
          Length = 232

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 133/239 (55%), Gaps = 16/239 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL  +   RIIEIGA+E+++   T      ++ P  R    +A+++HGI
Sbjct: 1   MRQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPE-RSIERDAIEIHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122
           TD FL DKP F  I +E   F   + AE I HNA FDVGF+N EL+   +         +
Sbjct: 60  TDSFLIDKPLFKDIATELISFL--KGAELIIHNAPFDVGFLNHELKLTGQSFKTLTHYCQ 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL+IAR+KHP   N+L++LC+RY +  S+R  HGALLD+ LL+ VY+ M  G + + 
Sbjct: 118 VLDTLTIARQKHPGQHNNLDALCRRYHVDNSNRDYHGALLDAELLAQVYLLMTGGQTVL- 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLL-KRDKPLFTRITKEELDEHDKTIQTLGKN--AIWD 238
                 E + F    ++V    L   RD     R    E + H   +Q L +N   +W+
Sbjct: 177 -----FEQQGFAVASRSVSVRPLGTDRDSLSVIRANAAETEAHRAFLQLLTENGLCLWN 230


>gi|329114274|ref|ZP_08243036.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001]
 gi|326696350|gb|EGE48029.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001]
          Length = 224

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 91/233 (39%), Positives = 131/233 (56%), Gaps = 12/233 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I+FD ETTGLD    DR+IEI A+EL+    T RTF   + P  R    EA ++HG T
Sbjct: 3   RSILFDTETTGLDPATGDRVIEIAALELVGDLPTGRTFHKLIDPE-RDVPEEASRVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+ KP F+ +  +F  F  +     IAHNA+FD GF+NAEL+R  K  L   R++DT
Sbjct: 62  RADLEGKPKFAEVADDFLAFVGDD--PLIAHNARFDFGFMNAELKRAGKKTLGLDRMVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +AR + P   N L++LC+R+G+ +S R+ H ALLD  LL+DVY+++M GG Q   G  
Sbjct: 120 LDMARERFPGMPNSLDALCRRFGVDLSARTTHNALLDCKLLADVYVELM-GGRQHGLGLM 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             + +      +   N  +++       + T +EL  H   +  L K  IW+R
Sbjct: 179 AEDGQLPSVMYEGPVNRKVVR------VQPTPQELAAHAAFVAGL-KEPIWER 224


>gi|162148736|ref|YP_001603197.1| DNA polymerase III epsilon subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545498|ref|YP_002277727.1| DNA polymerase III subunit epsilon [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787313|emb|CAP56907.1| putative DNA polymerase III epsilon subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533175|gb|ACI53112.1| DNA polymerase III, epsilon subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 226

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 90/231 (38%), Positives = 129/231 (55%), Gaps = 10/231 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I+FD ETTGLD  + DR+IEI A+EL+    T R F V + P+ R    EA ++HG T
Sbjct: 3   RAILFDTETTGLDPARGDRVIEIAALELVGDLPTGRHFHVLIHPD-RDIPEEASRVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+ KP F  I  +F  F  + +   IAHNA+FD GF+NAEL+R  +  L   R++DT
Sbjct: 62  LADLEGKPRFHEIADDFLAFIGQDD--LIAHNARFDFGFLNAELKRAERPALSLDRMVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L IAR ++P   N L++LC+R+ I +S R+ H ALLD  LL++VY+++M GG Q   G  
Sbjct: 120 LDIARDRYPGLPNSLDALCRRFSIDLSARTTHNALLDCRLLAEVYLELM-GGRQRGLGLT 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
             +    +          L     P     T++EL  H + +  + K  IW
Sbjct: 179 VQDGGGAQVSYAY----DLAGARTPRLIVPTEQELAAHGRFLDKI-KEPIW 224


>gi|170750672|ref|YP_001756932.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657194|gb|ACB26249.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans
           JCM 2831]
          Length = 240

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 98/243 (40%), Positives = 142/243 (58%), Gaps = 10/243 (4%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+IV D ETTG ++K  DR+IEIGAVELL++  T RTF  +  P  R  S  A  +HG+
Sbjct: 2   LREIVLDTETTGTEAKGGDRLIEIGAVELLNHIPTGRTFHRYCNPQ-RPVSEGAFNVHGL 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122
           +D FL DKP F+ I  E   F    +   + HNA FDVGF+N E  R+  +   P +   
Sbjct: 61  SDAFLADKPVFAEIVGELLAFLA--DGRLVIHNAPFDVGFLNMEYARLGANAPPPIQLED 118

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +ARRKHP + N+L++LC RYGI  + R+KHGALLD+ +L++VY++++ GG Q +
Sbjct: 119 VVDTLPMARRKHPGAANNLDALCARYGIDNTRRTKHGALLDAQILAEVYVELL-GGKQTS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
            G    E         +    +     +P  +R+T  E   HD    +LG  AIW  YI 
Sbjct: 178 LGL--LEAEKAAPAAGSTALAAAPAAPRPYRSRLTDAERARHDSFRASLGPAAIWADYIG 235

Query: 243 SNQ 245
           ++ 
Sbjct: 236 ADD 238


>gi|154245775|ref|YP_001416733.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
 gi|154159860|gb|ABS67076.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
          Length = 240

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 94/240 (39%), Positives = 138/240 (57%), Gaps = 7/240 (2%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR++EIG VE+++   T   F V++ P  R    EA  +HG+
Sbjct: 1   MREIVLDTETTGLEAYGGDRLVEIGCVEMVNRILTGTVFHVYINPE-RDMPVEAFNVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL DKP F  +  EF +F  E     + HNA FD+GF+NAEL+R+ +  +   R++D
Sbjct: 60  SAEFLSDKPKFKDVADEFLNFIAED--TLVIHNAAFDIGFLNAELERLGRPTIARDRVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++ARRKHP   N L+ L  RYGI  S R KHGALLD+ LL++VY +++ G      G 
Sbjct: 118 TLALARRKHPGGGNRLDDLMNRYGIDSSRRVKHGALLDAELLAEVYGELLGGKQASLIGL 177

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245
             +        +  V   +   R  PL  R+T  E + H   I ++G+ A+W +Y    +
Sbjct: 178 VEDTSEA---PRLVVAAAAAHPRPVPLAPRLTAAEAEAHAAFIASMGEKALWLKYADVPE 234


>gi|52841614|ref|YP_095413.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628725|gb|AAU27466.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 251

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 94/232 (40%), Positives = 137/232 (59%), Gaps = 10/232 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTG+  +   R+IEIG +EL+D   T + F ++L P  R+    A ++HGI
Sbjct: 19  MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 77

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLDPSRI 123
           + EFL+DKP F  I +EF  F   + +E I HNA FDVGF+N+EL+  + NK   D  RI
Sbjct: 78  STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 135

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR KHP  RN L++LCKRY I   +R  HGALLD+ +L+ VY+ M  G S +  
Sbjct: 136 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 193

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
              T  +    + K     I  L   KP+  +  +EEL +H   ++ + K +
Sbjct: 194 --FTEVESSLSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKS 243


>gi|114332140|ref|YP_748362.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91]
 gi|114309154|gb|ABI60397.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91]
          Length = 234

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 140/239 (58%), Gaps = 15/239 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +  D ETTGLD     RI+EI AVE+ +   T R F  +L P GR++   AL++HG+
Sbjct: 1   MRYVFLDTETTGLDPALGHRIVEIAAVEVCNRRSTGRHFHRYLNP-GRESDEGALRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           + EFL+DKP+F  I SEF +F   ++AE + HNA FDVGFIN EL  I  +P+     +I
Sbjct: 60  SREFLQDKPAFQEICSEFLEFI--EDAEILIHNAPFDVGFINRELGLIRLEPMHNYCLQI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +A+  HP  RN+L++LC+RY I  +HR+ HGALLD+ LL++VY+ M  G   +  
Sbjct: 118 VDTLMLAKELHPGKRNNLDALCERYQIDNAHRTLHGALLDAELLAEVYLAMTRGQESL-- 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG----KNAIWD 238
                E    +  K     +   +    +   +++ EL+ HD+ ++ +      N +W+
Sbjct: 176 ---LMEPEVPEAGKSGDSRLRATENLTLIVQPVSQTELELHDRLLERINTESKGNCLWN 231


>gi|28199104|ref|NP_779418.1| DNA polymerase III subunit epsilon [Xylella fastidiosa Temecula1]
 gi|71901532|ref|ZP_00683617.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|182681831|ref|YP_001829991.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M23]
 gi|28057202|gb|AAO29067.1| DNA polymerase III epsilon chain [Xylella fastidiosa Temecula1]
 gi|71728719|gb|EAO30865.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|182631941|gb|ACB92717.1| DNA polymerase III, epsilon subunit [Xylella fastidiosa M23]
 gi|307578082|gb|ADN62051.1| DNA polymerase III subunit epsilon [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 239

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 97/243 (39%), Positives = 140/243 (57%), Gaps = 13/243 (5%)

Query: 3   RKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            +NK R+IV D ETTGL+ SK +RI+EIGAVELLD   +   F  +L P+       A +
Sbjct: 1   MRNKKRQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPD-VSFESGAQE 59

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118
           + G+T EFL DKP FS I  +F  + N   AE I HNA FD+GF++ EL R+        
Sbjct: 60  VTGLTMEFLADKPEFSMIADKFLAYIN--GAELIIHNAAFDLGFLDYELSRLGSQYGKIT 117

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D + ++DTL +AR ++P  RN L++LCKR G+  +HR  HGALLD+ +L+DVYI +  G 
Sbjct: 118 DRASVLDTLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQ 177

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--- 235
            +I  GF   E      +  +V  +  +   +P     ++ EL+ H+  +  L K A   
Sbjct: 178 EEI--GFALPESSRGGVDAASVAFMPDVLLTRPCVV-ASQSELEAHEARLAKLRKIAGHV 234

Query: 236 IWD 238
           +WD
Sbjct: 235 LWD 237


>gi|83749368|ref|ZP_00946363.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551]
 gi|207742873|ref|YP_002259265.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum
           IPO1609]
 gi|83723945|gb|EAP71128.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551]
 gi|206594267|emb|CAQ61194.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum
           IPO1609]
          Length = 242

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/240 (36%), Positives = 131/240 (54%), Gaps = 15/240 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR+IEIG VEL++   T R    ++ P  R+  P A+ +HGI
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPE-REIDPGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T+EF+ DKP F+ + +E  D+   Q AE I HNA FD+GF++ E +R+            
Sbjct: 60  TNEFVADKPKFAEVVAEIRDYV--QGAEAIIHNAAFDLGFLDMEFRRLGLPSFREHLDGH 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  ARR  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G + +  
Sbjct: 118 IDTLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWDR 239
                 +    E       + L   + P+    T+ E   H   ++ +    G   +W R
Sbjct: 178 DMLEGGETAATEAA----AVDLSGLELPILL-ATEVEAAAHATVLKEIDKASGGKTVWSR 232


>gi|94676582|ref|YP_588911.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
 gi|94219732|gb|ABF13891.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
          Length = 240

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 90/241 (37%), Positives = 137/241 (56%), Gaps = 14/241 (5%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV DIETTG++         RIIEIGAVE+++   T + F V+L P  R    EA K+
Sbjct: 3   RQIVLDIETTGINKLGVHYYGHRIIEIGAVEIINRRITGKNFHVYLNPE-RFIDQEAFKI 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS- 121
           HGI++ FLKDKP+F+ +  +   F ++  +E + H+A FD+GFI+ E + +N+  +  + 
Sbjct: 62  HGISNNFLKDKPTFAQVADKLITFISQ--SELVIHHAPFDIGFIDYEFKLLNRSMISKTF 119

Query: 122 -RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++ DTL +AR+  P  RN L++LC RY I   HR+KHGALLD+ +L+++Y+ M  G + 
Sbjct: 120 VQVTDTLLLARKIFPGKRNSLDALCNRYHIKNIHRTKHGALLDAKILAEIYLIMTGGQTS 179

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIW 237
           INF   T E    ++ K       L   DK        +EL EH   +  + K     +W
Sbjct: 180 INFNL-TQESNIEQKYKGKNIYFPLSHEDKLKVIYANNKELSEHRNILDRIEKQNSKCLW 238

Query: 238 D 238
            
Sbjct: 239 K 239


>gi|332286832|ref|YP_004418743.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7]
 gi|330430785|gb|AEC22119.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7]
          Length = 236

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/239 (36%), Positives = 126/239 (52%), Gaps = 15/239 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD  +  R++E+  VE+ + S T R   ++L P GR + PEAL +HG+
Sbjct: 1   MRQIVLDTETTGLDPAQGHRVVELACVEMENRSLTGRHLHLYLNP-GRDSDPEALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL   P F  +  +  D+   ++AE I HNA FDV F+NAEL R      +    +I
Sbjct: 60  TTEFLSGHPRFEEVAQQLVDYV--KDAEVIIHNAAFDVKFLNAELTRAGLPVFNSLCGKI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L  AR  HP  RN L++LC+RYGI+ +HR+ HGALLDS LL+DV++ M  G   +  
Sbjct: 118 TDSLLHARELHPGKRNSLDALCERYGISNAHRTLHGALLDSELLADVWLAMTRGQDALLM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238
            F+ +              +              + EL  H+  +  L K      +W 
Sbjct: 178 DFEDDGSTGANGM-----RLEQFDASTLKVVLAGEAELQAHNDYLAGLDKTAGTPCVWR 231


>gi|58040389|ref|YP_192353.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H]
 gi|58002803|gb|AAW61697.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H]
          Length = 228

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 97/235 (41%), Positives = 133/235 (56%), Gaps = 13/235 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I+FD ETTG D    DRIIEI A+EL+D   T   + V + P  R    EA K+HG  
Sbjct: 3   RSILFDTETTGFDPDMGDRIIEIAALELIDDLPTGEAYHVLIHPE-RDIPAEATKVHGFR 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
            E L+ KP FS +   F +F    ++  IAHNA+FD  F+NAEL+   ++PLD  SR ID
Sbjct: 62  IEDLEGKPIFSEVADGFLEFIG--DSPMIAHNARFDFKFVNAELKACGREPLDYASRAID 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +AR+K+P     L++LC+R+GI +S R  H ALLD  LL++VY+++M GG Q   G 
Sbjct: 120 TVEMARKKYPGLPASLDALCRRFGIDLSQRGTHNALLDCKLLAEVYVELM-GGRQRGLGL 178

Query: 186 KTNE-DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                 R   E    + N    K   P     T EEL  H+  + T+ K+A+W R
Sbjct: 179 AGPSRSRSMTEGINALANRKPRKMAPP-----TAEELQAHEAFVSTI-KDAVWLR 227


>gi|152980051|ref|YP_001352902.1| DNA polymerase III epsilon subunit [Janthinobacterium sp.
           Marseille]
 gi|151280128|gb|ABR88538.1| DNA polymerase III epsilon subunit [Janthinobacterium sp.
           Marseille]
          Length = 235

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 84/186 (45%), Positives = 120/186 (64%), Gaps = 6/186 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +  DRIIEIG VEL++   T   F  ++ P  R +   AL +HG+
Sbjct: 1   MRQIVLDTETTGLNPRSGDRIIEIGCVELVNRRLTGNNFHHYINPE-RDSEEGALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123
           T EFL DKP F+ I +EF D+ +   A+ I HNA FD+GF++AEL+R+N          +
Sbjct: 60  TTEFLSDKPKFAEIAAEFRDYIS--GADVIIHNAPFDIGFLDAELKRVNTPSFKEHVGEV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  A+  HP  RN L++LC RYGI+ +HR+ HGALLD+ LL++VY+ M  G + ++ 
Sbjct: 118 IDTLVQAKEMHPGKRNSLDALCDRYGISNAHRALHGALLDAELLAEVYLAMTRGQNSLSM 177

Query: 184 GFKTNE 189
               ++
Sbjct: 178 DLGASD 183


>gi|326386170|ref|ZP_08207794.1| DNA polymerase III, epsilon subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209395|gb|EGD60188.1| DNA polymerase III, epsilon subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 230

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 95/235 (40%), Positives = 136/235 (57%), Gaps = 8/235 (3%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD +N DR++EIG VEL++   T   F  +  P+ R    EA  +HG+
Sbjct: 1   MREIVFDTETTGLDPRNGDRLVEIGCVELVNRIATGSVFHCYFNPD-RDMPAEAEAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  FL DKP FS   +E  DF    +A  +AHNA FD GF+N+EL       +   R++D
Sbjct: 60  SAAFLSDKPKFSERAAELLDFLG--DAPLVAHNAGFDFGFLNSELTFCGMGEVSRDRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T++IARRKHP ++  L++LC RYGI  SHR+KHGALLD+ LL+ +Y+++M GG QI    
Sbjct: 118 TVAIARRKHPGAKLSLDALCSRYGIDRSHRTKHGALLDAELLAQLYVELM-GGRQIGLEL 176

Query: 186 KTNEDRFF-KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
             +       E+  T P ++   R        +  EL  H + +     + +W R
Sbjct: 177 AADTLTVAVSEDAPTRPQLARPFRPA-RPHSASVAELARHAEFMAGFA-DPLWSR 229


>gi|94311147|ref|YP_584357.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34]
 gi|93354999|gb|ABF09088.1| DNA polymerase III epsilon subunit [Cupriavidus metallidurans CH34]
          Length = 241

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 90/245 (36%), Positives = 136/245 (55%), Gaps = 15/245 (6%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +  DR+IEIG VEL++   T R    ++ P  R    +A+ +HGI
Sbjct: 1   MRQIVLDTETTGLNHATGDRLIEIGCVELVNRRLTGRHLHFYVNPE-RDIHEDAIAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T +FL DKP F+ I ++  DF   Q+AE I HNA FD+GF++ E QR++  P       +
Sbjct: 60  TLDFLADKPKFAEIVNDVRDFV--QDAELIIHNAPFDLGFLDMEFQRLDLPPFRQHASNV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  AR+  P  RN L++LC R G++ SHR+ HGALLD+ LL++VY+ M  G  Q + 
Sbjct: 118 IDTLREARQMFPGKRNSLDALCDRLGVSNSHRTLHGALLDAELLAEVYLAMTRG--QNSL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWDR 239
                +      E ++  ++S +     L    ++ E+  H   ++ L    G   +W  
Sbjct: 176 VIDMLDGAATDGETRSTADLSAMTLPVLL---ASEAEISAHMGVLKELDKASGGKTVWQE 232

Query: 240 YISSN 244
              + 
Sbjct: 233 ASPAE 237


>gi|58696733|ref|ZP_00372277.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58698126|ref|ZP_00373049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225629990|ref|YP_002726781.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi]
 gi|58535372|gb|EAL59448.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58537085|gb|EAL60207.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225591971|gb|ACN94990.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi]
          Length = 231

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 94/241 (39%), Positives = 144/241 (59%), Gaps = 11/241 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            ++K+R++V D ETTGLD++   RIIEIG VEL++   T + F  +L P  R     + K
Sbjct: 1   MESKLRELVLDTETTGLDTESGHRIIEIGCVELINRIPTGKVFHRYLNPE-RDIPYHSFK 59

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI++EFL+DKP FS +  EF DF +  N   + HNA+FDV F+N EL ++N   +   
Sbjct: 60  IHGISEEFLEDKPLFSDVALEFLDFIS--NDILVIHNAEFDVKFLNMELSKLNAGLISSD 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           R++DTL +AR+K   S   LN+LCKR+ I++ +R  HGAL+D+ LL+ VY+++  G    
Sbjct: 118 RVLDTLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTF 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
            F  + N+D      +  V N++      P       EE+DEH K +  +  N +W++YI
Sbjct: 178 LFDNECNQDSNSTFVQHKVRNLT------PREHSPNSEEIDEHKKLLDKIN-NTLWNKYI 230

Query: 242 S 242
            
Sbjct: 231 E 231


>gi|258541965|ref|YP_003187398.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633043|dbj|BAH99018.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636100|dbj|BAI02069.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639155|dbj|BAI05117.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642209|dbj|BAI08164.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645264|dbj|BAI11212.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648319|dbj|BAI14260.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651372|dbj|BAI17306.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654363|dbj|BAI20290.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 224

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 91/232 (39%), Positives = 128/232 (55%), Gaps = 12/232 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I+FD ETTGLD    DR+IEI A+EL+    T R F   + P  R    EA ++HG T
Sbjct: 3   RSILFDTETTGLDPATGDRVIEIAALELVGDLPTGRNFHTLIDPE-RDVPEEASRVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+ KP F+ I  +F  F  +     IAHNA+FD GF+NAEL+R  K  L   R++DT
Sbjct: 62  RADLEGKPKFAEIADDFLAFVGDD--PLIAHNARFDFGFMNAELKRAGKKTLGLDRMVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +AR + P   N L++LC+R+G+ +S R+ H ALLD  LL+DVY+++M GG Q   G  
Sbjct: 120 LDMARERFPGMPNSLDALCRRFGVDLSARTTHNALLDCKLLADVYVELM-GGRQHGLGLM 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
             + +      +   N       K +  + T EEL  H   +  L K  +W+
Sbjct: 179 AEDGQLPSVMYEGPVN------RKAVRVQPTAEELAAHAAFVAGL-KEPVWE 223


>gi|42520014|ref|NP_965929.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|99034422|ref|ZP_01314429.1| hypothetical protein Wendoof_01000768 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|42409751|gb|AAS13863.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 231

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 95/241 (39%), Positives = 144/241 (59%), Gaps = 11/241 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            ++K+R+IV D ETTGLD++   RIIEIG VEL++   T + F  +L P  R     + K
Sbjct: 1   MESKLREIVLDTETTGLDTESGHRIIEIGCVELINRIPTGKVFHRYLNPE-RDIPYHSFK 59

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI++EFL+DKP FS +  EF DF +  N   + HNA+FDV F+N EL ++N   +   
Sbjct: 60  IHGISEEFLEDKPLFSDVALEFLDFIS--NDILVIHNAEFDVKFLNMELSKLNARLISSD 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           R++DTL +AR+K   S   LN+LCKR+ I++ +R  HGAL+D+ LL+ VY+++  G    
Sbjct: 118 RVLDTLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTF 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
            F  + N+D      +  V N++      P       EE+DEH K +  +  N +W++YI
Sbjct: 178 LFDNECNQDSNSTFVQHKVRNLT------PREHLPNSEEIDEHKKLLDKIN-NTLWNKYI 230

Query: 242 S 242
            
Sbjct: 231 E 231


>gi|88800079|ref|ZP_01115649.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297]
 gi|88777205|gb|EAR08410.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297]
          Length = 238

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 89/243 (36%), Positives = 134/243 (55%), Gaps = 18/243 (7%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTGL+  K DRI+E+G VE++D   T R F  ++ P  R    E + +HGI
Sbjct: 1   MRQVVLDTETTGLNPTKGDRIVEVGCVEMVDRKLTGRHFHYYINPE-RDIPDEVVAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----- 120
            ++ +KD P F  I  E W +   + AE + HNA FD+GF+NAE +R  ++  +P     
Sbjct: 60  DNDKVKDSPKFRDIAVELWTWL--EGAELVIHNAAFDMGFLNAEFERFAQEQREPFEKLE 117

Query: 121 --SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               ++DTL +AR KHP S+  L++LCKRYGI  SHR+ HGALLDS +L+DVY+ +  G 
Sbjct: 118 TVCGVLDTLKVARDKHPGSKVSLDALCKRYGIDNSHRTLHGALLDSEILADVYLMLTGGQ 177

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKN 234
           + +     +      +    +  + S       +  + +  EL  H+  I  L    GK+
Sbjct: 178 TALILDDSSESGSSDQAVDVSALDDSGG---HLITVQPSSAELAAHEAFIDMLAEKSGKD 234

Query: 235 AIW 237
             W
Sbjct: 235 VRW 237


>gi|295691552|ref|YP_003595245.1| DNA polymerase III subunit epsilon [Caulobacter segnis ATCC 21756]
 gi|295433455|gb|ADG12627.1| DNA polymerase III, epsilon subunit [Caulobacter segnis ATCC 21756]
          Length = 237

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 83/235 (35%), Positives = 132/235 (56%), Gaps = 9/235 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTG D K  DR++EIG +E++D+  T R+F  +  P  R    EA K+HG++
Sbjct: 3   REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEYCDP-LRDMPAEAEKVHGLS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             FL  KP F  I   F +F    ++  +AHNA FD  F+N EL++  + P+   R +DT
Sbjct: 62  SAFLTGKPKFHEIADRFVEFVG--DSVVVAHNAAFDRQFVNFELEKCGRAPIREDRWVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LCKR+ I++  R KHGAL+D+HLL++VY+++  GG +      
Sbjct: 120 LAMAKKRFPGMYNSLDALCKRFKISLESRDKHGALIDAHLLAEVYLEL-QGGKERALELT 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-LGKNAIWDRY 240
              +             S   R +PL  R T  E + H   ++  L   A+W ++
Sbjct: 179 HVVETLAVSAAIQG---SYGSRPRPLAPRSTDAEREVHAAWVRKNLKDQALWIKF 230


>gi|21230449|ref|NP_636366.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769557|ref|YP_244319.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992765|ref|YP_001904775.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112012|gb|AAM40290.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574889|gb|AAY50299.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734525|emb|CAP52735.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           campestris]
          Length = 245

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 90/239 (37%), Positives = 138/239 (57%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLRPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           T EFL DKP F+ +  EF  + +   AE I HNA FD+GF++ EL  +       +D + 
Sbjct: 60  TLEFLADKPVFAEVVEEFLAYID--GAELIIHNAAFDLGFLDNELSLLGDQFGRIIDRAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           FG   +  +  +  +  +     L   +P    +T  EL  H+  ++ L K    A+WD
Sbjct: 178 FG-AMDAGQHAEGGEGMIAFDPSLLLPRPRVV-VTPSELQAHEARLERLRKKAGRALWD 234


>gi|329847376|ref|ZP_08262404.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum
           C19]
 gi|328842439|gb|EGF92008.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum
           C19]
          Length = 229

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 87/232 (37%), Positives = 136/232 (58%), Gaps = 8/232 (3%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +IV D ETTG+D +   R+IEIG +E+ D   T RTF  F+ P  R+  P+A+++HGI++
Sbjct: 4   EIVLDTETTGIDHRKGHRLIEIGCIEIEDLLPTGRTFHHFVDPE-REIEPDAIRVHGISN 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++ KP F  I  E  +F  ++    IAHNA FD GFIN E++R+++      + IDTL
Sbjct: 63  EKVRGKPKFGQIADELCEFIGDKR--IIAHNAAFDRGFINMEMERLSRVCHPDDQWIDTL 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            +AR K P   N L++LC+R+ I+++ R  HGAL+D+ LL+ VY++++ GG +     + 
Sbjct: 121 ELARNKFPGMANSLDALCRRFNISLAERDLHGALIDARLLASVYLELL-GGKERGLDLEM 179

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-LGKNAIWD 238
              R   E  +    IS   R +PL  RIT  E+  H+  +   L   ++W 
Sbjct: 180 ASARI--EAVQVANPISYGARPRPLAPRITAAEVAAHEAFVAKYLKDKSLWK 229


>gi|261253702|ref|ZP_05946275.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
 gi|260937093|gb|EEX93082.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
          Length = 223

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 87/226 (38%), Positives = 131/226 (57%), Gaps = 13/226 (5%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
           G   +  RIIEIGAVE+++   T R F V++ P+ R    EA+++HGITDEFL DKP + 
Sbjct: 6   GPHYQGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RDIQSEAVEVHGITDEFLVDKPEYQ 64

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSRIIDTLSIARRKH 134
            + +EF DF   + AE +AHNA FD GF++ E   ++       D  ++ DTL++A++  
Sbjct: 65  DVHAEFLDFI--KGAELVAHNAPFDTGFMDYEFGMLDPTIGKTDDYCKVTDTLAMAKKIF 122

Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFK 194
           P  RN+L+ LC RYGI  SHR+ HGALLD+ +L+DVY+ M  G + + F   ++ D   +
Sbjct: 123 PGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLQFNAGSSNDDGGE 182

Query: 195 EEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWD 238
             K+         R      R T +E+D H+K +  + KN   +W 
Sbjct: 183 AIKRAASG-----RKALKVLRATADEIDAHNKRLDIVEKNGSCLWR 223


>gi|237748501|ref|ZP_04578981.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes OXCC13]
 gi|229379863|gb|EEO29954.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes OXCC13]
          Length = 247

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 94/240 (39%), Positives = 136/240 (56%), Gaps = 17/240 (7%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL + N DRIIEIG VE+L    T   F  ++ P  R + P+AL +HG+
Sbjct: 1   MRQIVLDTETTGLYANNGDRIIEIGCVEVLSRHVTENHFHQYINPE-RDSHPDALAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII- 124
           T EFL DKP F+ I   F D+   + AE I HNA FD+GF+NAEL R+    ++      
Sbjct: 60  TTEFLSDKPKFAEIAQAFCDYI--RGAELIIHNAPFDIGFLNAELARLGMPKVEEIAECI 117

Query: 125 -DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L  AR   P  RN L++LC+R+ I+ +HR+ HGALLDS LL++VY+ M  G   +  
Sbjct: 118 TDSLVKARDMFPGRRNSLDALCERFEISNAHRTLHGALLDSELLAEVYLAMTRGQETLEI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-----AIWD 238
           G  + E+     +   + NI +      +    T+EEL  H++ +  + K+      +W 
Sbjct: 178 GGMSIEEEEAAAKAAPLSNIHI------VVLAATEEELARHEEVLDDIEKSNKGAPCVWR 231


>gi|30248167|ref|NP_840237.1| DNA polymerase III (epsilon chain) protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30180052|emb|CAD84052.1| probable DNA polymerase III (epsilon chain) protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 232

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 93/239 (38%), Positives = 136/239 (56%), Gaps = 15/239 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +  D ETTGLD     RI+EI AVE+ +   T+R F  +L P GR++   AL++HG+
Sbjct: 1   MRYVFLDTETTGLDPALGHRIVEIAAVEVCNRRLTDRHFHRYLNP-GRESDEGALRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T EFL+DKP F  + SEF +F    +AE   HNA FDVGFIN EL  I  + +     +I
Sbjct: 60  TREFLRDKPVFQDVCSEFLEFIA--DAEIFIHNAPFDVGFINRELDLIRFESMQNHCLQI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +A+  HP  RN+L++LC+RY I  SHR+ HGALLD+ LL++VY+ M  G   +  
Sbjct: 118 IDTLVLAKELHPGKRNNLDALCERYQIDNSHRTLHGALLDAELLAEVYLAMTRGQESLLM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG----KNAIWD 238
                  R     +   P +  ++    +    T+ EL+ H + ++ +      N +W+
Sbjct: 178 EMDAPASR-----QADNPAVGKVENLALIVQPATQAELELHSRLVERINAESKGNCLWN 231


>gi|326405243|ref|YP_004285325.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
 gi|325052105|dbj|BAJ82443.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
          Length = 235

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 85/241 (35%), Positives = 131/241 (54%), Gaps = 15/241 (6%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++FD ETTGL+    DR+IE+ A+EL +   T + F   + P  R    EA ++HG+T
Sbjct: 3   RAVLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGKVFHTLIDPE-RDIPAEASRVHGMT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +  KP F+ I +E  +FF E     +AHNA FD GF++AE  RI +  LD +R+IDT
Sbjct: 62  SADVAGKPKFAEIAAELLEFFAED--PLVAHNAPFDFGFLDAEFARIGRAALDRARMIDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LC+R+ I +S R+ H ALLD  LL++VY+++  GG Q      
Sbjct: 120 LALAKQRFPGMPNSLDALCRRFDIDLSARTTHNALLDCKLLAEVYVELT-GGRQRGLDLA 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW--DRYISSN 244
                   E +   P         P     +  EL  H+  I+ L K  +W  D+   ++
Sbjct: 179 AESTIRLVEYRSEGPR-------TPRPIVASAAELAAHEAFIEKL-KEPVWRLDQAAPTD 230

Query: 245 Q 245
           Q
Sbjct: 231 Q 231


>gi|88813349|ref|ZP_01128587.1| DNA polymerase III, epsilon subunit [Nitrococcus mobilis Nb-231]
 gi|88789407|gb|EAR20536.1| DNA polymerase III, epsilon subunit [Nitrococcus mobilis Nb-231]
          Length = 245

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 90/241 (37%), Positives = 131/241 (54%), Gaps = 13/241 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+     R+IEIG  EL     + RTF  +L P+ R+  P A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPADGHRVIEIGCYELCYRRASGRTFHHYLNPD-REVEPGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122
           T+EFL DKP F  I ++F +F   ++AE I HNA FDVGF++ E  R+        D  +
Sbjct: 60  TNEFLADKPRFCDIATDFIEFI--RDAELIIHNAPFDVGFLDYEFSRLTGSWGRLADYCQ 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR +HP  RN L++LC RY +  + RS HGALLD+ LL++VY+ M  G + ++
Sbjct: 118 VTDTLALARERHPGQRNSLDALCTRYAVDNAQRSLHGALLDAQLLAEVYLLMTGGQTALS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
                            V  +    R +    R +  E  EH   +  L    G   +W 
Sbjct: 178 LESGAGLSADLA-LVGGVRRLDPA-RPRLPVVRASSAEQAEHRHWLDELDQAVGGCCVWR 235

Query: 239 R 239
           +
Sbjct: 236 Q 236


>gi|78485275|ref|YP_391200.1| DNA polymerase III, epsilon subunit [Thiomicrospira crunogena
           XCL-2]
 gi|78363561|gb|ABB41526.1| DNA polymerase III, epsilon subunit [Thiomicrospira crunogena
           XCL-2]
          Length = 231

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 89/234 (38%), Positives = 135/234 (57%), Gaps = 14/234 (5%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTG D KN D+IIEIGAVEL+    T+  +  ++ P  R    +A+++HGI
Sbjct: 1   MRQILLDTETTGFDPKNGDKIIEIGAVELIKRKLTHNNYHQYIQPE-RDVPIDAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL----DPS 121
           T+EFL  KP F+ +  +F ++     AE I HNA FDVGFIN EL ++  +      D  
Sbjct: 60  TNEFLVGKPIFADVVDDFMEYVA--GAELIIHNAPFDVGFINQELSQLPNNKWGKIEDHC 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            I D+L +AR+ +P  RN L++LCKR+ I  S+R+ HGALLDS +L+DVY+ M  G + +
Sbjct: 118 TITDSLKMARKAYPGQRNSLDALCKRFLIDNSNRTLHGALLDSEILADVYLAMTGGQTAL 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
                 +E+    +  +   N    +R      + + EEL  H+  +Q + +  
Sbjct: 178 IL---ADEEGSSSDASRVNLNT---QRAPLKVLKASAEELAAHNGKLQQISEKC 225


>gi|84501202|ref|ZP_00999407.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola batsensis HTCC2597]
 gi|84390493|gb|EAQ02981.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola batsensis HTCC2597]
          Length = 230

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 96/235 (40%), Positives = 142/235 (60%), Gaps = 8/235 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL ++  T  T+ V++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPEQGDRIVEIGAVELWNHVPTGETYHVYINPE-RSMPQEAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+FL+DKP F  +   F +F   ++A+ + HNA FD+ FINAEL  +N   +   + ID
Sbjct: 60  GDDFLRDKPVFRDVARGFVEFV--KDAKLVIHNASFDMKFINAELGWLNIPAIPWDQAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL+IAR++ P S   L++LC+R+GI  S R+ HGALLDS +L++VY++++ GG Q +F  
Sbjct: 118 TLAIARQRFPGSPASLDALCRRFGIDNSARTLHGALLDSEILAEVYLELI-GGRQPDFAL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             +      +      +     R  PL  RIT EE   H + ++ LG  A+W  Y
Sbjct: 177 SAS---TGTQTGTDTADWRPKPRPTPLPPRITAEEAAAHAEFVERLGDGALWKSY 228


>gi|148358915|ref|YP_001250122.1| DNA polymerase III subunit epsilon [Legionella pneumophila str.
           Corby]
 gi|296106963|ref|YP_003618663.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280688|gb|ABQ54776.1| DNA polymerase III, epsilon subunit [Legionella pneumophila str.
           Corby]
 gi|295648864|gb|ADG24711.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99
           Alcoy]
          Length = 233

 Score =  222 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 94/232 (40%), Positives = 136/232 (58%), Gaps = 10/232 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTG+  +   R+IEIG +EL+D   T + F ++L P  R+    A ++HGI
Sbjct: 1   MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLDPSRI 123
           + EFL+DKP F  I +EF  F   + +E I HNA FDVGF+N+EL+  + NK   D  RI
Sbjct: 60  STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR KHP  RN L++LCKRY I   +R  HGALLD+ +L+ VY+ M  G S +  
Sbjct: 118 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
              T  +      K     I  L   KP+  +  +EEL +H   ++ + K +
Sbjct: 176 --FTEVESSMSHSKIKTQEIKSLSLKKPVIMKANEEELIQHQSFVEFISKKS 225


>gi|291613978|ref|YP_003524135.1| DNA polymerase III, subunit epsilon [Sideroxydans lithotrophicus
           ES-1]
 gi|291584090|gb|ADE11748.1| DNA polymerase III, epsilon subunit [Sideroxydans lithotrophicus
           ES-1]
          Length = 233

 Score =  222 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 87/238 (36%), Positives = 130/238 (54%), Gaps = 15/238 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD K   RIIE+ A+EL     + RTF  ++ P  R+    A  +HG+
Sbjct: 1   MRQIVLDTETTGLDPKQGHRIIEVAAIELNGRKVSERTFHRYINPE-REIDEGAAAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + L+D+P F+ +     +F     AE I HNA FD+GF+NAEL      PL  + +ID
Sbjct: 60  TLDRLQDEPKFAEVAPALLEFIA--GAELIIHNAPFDIGFLNAELALAGL-PLLNNPVID 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +A+  HP  +N+LN+LC RY +  SHR+ HGALLD+ LL++VY+ M  G   +    
Sbjct: 117 TLKVAKELHPGKKNNLNALCDRYQVDNSHRTLHGALLDTELLAEVYLGMTRGQESLLGEE 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239
           ++ ED            +S+           +++EL  H   ++ + K    + +W R
Sbjct: 177 RSEEDGVQFTASGEAICLSV------RVLPASEDELALHRAQLEDIEKASKGSCLWKR 228


>gi|190573031|ref|YP_001970876.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
           K279a]
 gi|190010953|emb|CAQ44562.1| putative DNA polymerase III, epsilon chain [Stenotrophomonas
           maltophilia K279a]
          Length = 243

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 91/239 (38%), Positives = 131/239 (54%), Gaps = 13/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +RI+EIG VEL     T   +  ++ P+  +    A ++ G+
Sbjct: 1   MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDC-EFEQGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           T EFL DKP F+ I  EF  F +   AE I HNA FD+GF++ EL  +        D   
Sbjct: 60  TLEFLDDKPEFAQIADEFLAFID--GAELIIHNAAFDLGFLDNELSLLGPQYGKITDRCT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDTL++AR + P  RN L++LCKR G+  SHR+ HG LLD+ +L DVYI +  G  +I 
Sbjct: 118 VIDTLAMARERFPGQRNSLDALCKRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           FG   ++        +      LL R + +    T  EL+ H   ++ L K    A+WD
Sbjct: 178 FGLGDDDGGGAGAALQAFDTSKLLPRPRVV---ATPSELEAHAARLERLRKKAGHALWD 233


>gi|56416800|ref|YP_153874.1| DNA polymerase III epsilon chain [Anaplasma marginale str. St.
           Maries]
 gi|222475164|ref|YP_002563580.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Florida]
 gi|254995002|ref|ZP_05277192.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Mississippi]
 gi|255003148|ref|ZP_05278112.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Puerto Rico]
 gi|255004274|ref|ZP_05279075.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Virginia]
 gi|56388032|gb|AAV86619.1| DNA polymerase III epsilon chain [Anaplasma marginale str. St.
           Maries]
 gi|222419301|gb|ACM49324.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Florida]
          Length = 232

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 90/241 (37%), Positives = 138/241 (57%), Gaps = 11/241 (4%)

Query: 6   KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R+IV D ETTGLD+   DRIIEIG VEL+D+  T + F  ++ P  R     A K+HG
Sbjct: 2   RTREIVLDTETTGLDAASGDRIIEIGCVELVDFVMTGQVFHKYINPE-RDIPIAATKIHG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT + +K+ P F+ +  +F +F   Q++  + HNA FD+ FI  E++RI K  L  + ++
Sbjct: 61  ITTDMVKNMPKFAEMADQFLNFV--QDSVLVIHNAGFDLKFIETEMERIGKTKL-YNPVV 117

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +ARRK P     L++LCKR+ I+ S R  HGAL D+ LL+ VY+++  GG Q + G
Sbjct: 118 DTLEVARRKFPGMPASLDALCKRFDISTSSRRFHGALKDATLLARVYVEL-CGGIQRSLG 176

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
           F + +        K    +       P    I+  EL  H ++I  + K+ IW+ Y+ ++
Sbjct: 177 FVSGDLTQSTRASKASKPV----LQAPRAFTISDLELKLHAESISKM-KDPIWNMYLKTS 231

Query: 245 Q 245
            
Sbjct: 232 D 232


>gi|326317571|ref|YP_004235243.1| DNA polymerase III subunit epsilon [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323374407|gb|ADX46676.1| DNA polymerase III, epsilon subunit [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 243

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 90/238 (37%), Positives = 130/238 (54%), Gaps = 14/238 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++  DRIIE+G VELL+   T     ++  P  R +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSAEGGDRIIELGCVELLNRKLTGNNLHLYFNPE-RDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124
           +EFLKDKP F+ +  E  ++   Q AE I HNA FDVGF+N EL+   +         + 
Sbjct: 62  NEFLKDKPKFAEVVDEILEYL--QGAEIIIHNAAFDVGFLNKELELTGRPAFTSYVESVT 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +A+  +P  RN L++LC R G+  S R+ HGALLD+ LL+DVYI +  G   +   
Sbjct: 120 DTLVMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLIA 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
               E     E    +  + L     P+    +++EL  HD+ +  +    G   IW 
Sbjct: 180 DDAQE---GDESAVRLAPVDLSAFTLPVLL-ASEQELAAHDEVLAQIDKASGGKTIWK 233


>gi|190571471|ref|YP_001975829.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213018874|ref|ZP_03334682.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190357743|emb|CAQ55194.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212995825|gb|EEB56465.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 234

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 95/242 (39%), Positives = 143/242 (59%), Gaps = 11/242 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            K+++R+IV D ETTGLD+K   RIIEIG VEL++   T +TF  +L P  R     + K
Sbjct: 1   MKSRLREIVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPE-RDIPYHSFK 59

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI++EFL+DKP FS +  EF DF +  N   + HNA+FDV F+N EL ++N   +   
Sbjct: 60  IHGISEEFLEDKPLFSDVALEFLDFIS--NDILVIHNAEFDVKFLNMELGKLNAGLISSD 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           R++DTL +AR+K   S   LN+LCKR+ I++  R  HGAL+D+ LL+ VY+++  G    
Sbjct: 118 RVLDTLPLARKKFVGSPASLNALCKRFDISLEGRELHGALVDAQLLAKVYVELTGGLQTF 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
            F  +  +D      +  V N++  +         + +E+DEH K +  +  N +W  YI
Sbjct: 178 LFNNECAQDNNSTFIQHKVRNLARREHS------PSIKEIDEHKKLLDKIN-NPLWKEYI 230

Query: 242 SS 243
            S
Sbjct: 231 ES 232


>gi|91788057|ref|YP_549009.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666]
 gi|91697282|gb|ABE44111.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666]
          Length = 234

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 134/239 (56%), Gaps = 16/239 (6%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL ++N DRIIEIG VEL+    T      +L P  R +  +ALK+HGI
Sbjct: 1   MRQIVLDTETTGLSAENGDRIIEIGCVELVGRKLTGNNRHFYLNPE-RDSHEDALKVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           ++EFLKDKP F+++  E  ++   Q AE I HNA FDV F+N EL+ I +DP+     ++
Sbjct: 60  SNEFLKDKPKFAAVADELLEYL--QGAEIIIHNAPFDVSFLNKELELIGRDPIRHCVAKV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L +A+   P  RN L++LC R  +  S R+ HGALLD+ LL+DVYI +  G + +  
Sbjct: 118 TDSLMMAKELFPGKRNSLDALCDRLDVDNSGRTLHGALLDAELLADVYINLTRGQNSL-- 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                +     ++  T P I L     PL      +E+  H+  +  + K      +W 
Sbjct: 176 ---MMDVGGPAQDGDTPPLIDLSAFALPLLL-ANDQEIAAHEVLLADIDKASKGKTVWR 230


>gi|254452968|ref|ZP_05066405.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           238]
 gi|198267374|gb|EDY91644.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           238]
          Length = 242

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 92/248 (37%), Positives = 140/248 (56%), Gaps = 22/248 (8%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG +  + DRI+EIGA+EL ++  T RT+  ++ P  R     A  +HGI
Sbjct: 1   MREIVLDTETTGFEPSEGDRIVEIGAIELHNHMPTGRTYHQYINPK-RTMPAGAFGIHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             +DKP F+ I   F DF    +++ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLEPPQTPTAGQVLLRDKPVFAEIAQAFVDFIG--DSKLVIHNAAFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +N+  L   + +DTL IAR+K P S   L++LC+R+GI  S+R+ HGALLDS +L++VY+
Sbjct: 118 VNRPLLPMGQSLDTLGIARKKFPGSPASLDALCRRFGIDNSNRTLHGALLDSEILAEVYL 177

Query: 173 KMMVG-GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           +++ G    +  G +T  +       +  P +    R  PL  +I   E D H   I+ L
Sbjct: 178 ELIGGRQPDLVMGDQTGSNAKNGGGAEWRPQL----RTTPLAPKIKAAEADAHAAFIKLL 233

Query: 232 GKNAIWDR 239
           G NA+W++
Sbjct: 234 GDNALWNK 241


>gi|148261748|ref|YP_001235875.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5]
 gi|146403429|gb|ABQ31956.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5]
          Length = 225

 Score =  221 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 83/232 (35%), Positives = 125/232 (53%), Gaps = 13/232 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++FD ETTGL+    DR+IE+ A+EL +   T + F   + P  R    EA ++HG+T
Sbjct: 3   RAVLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGKVFHTLIDPE-RDIPAEASRVHGMT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +  KP F+ I +E  +FF E     +AHNA FD GF++AE  RI +  LD +R+IDT
Sbjct: 62  SADVAGKPKFAEIAAELLEFFAED--PLVAHNAPFDFGFLDAEFARIGRAALDRARMIDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LC+R+ I  S R+ H ALLD  LL++VY+++  GG Q      
Sbjct: 120 LALAKQRFPGMPNSLDALCRRFDIDFSARTTHNALLDCKLLAEVYVELT-GGRQRGLDLA 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
                   E +   P         P     +  EL  H+  I+ L K  +W 
Sbjct: 179 AESTIRLVEYRSEGPR-------TPRPVVASAAELAAHEAFIEKL-KEPVWR 222


>gi|83944955|ref|ZP_00957321.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851737|gb|EAP89592.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii
           HTCC2633]
          Length = 236

 Score =  221 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 86/231 (37%), Positives = 137/231 (59%), Gaps = 11/231 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+FD ETTGLD +  DR+ E+G VE++D   T +  ++ + P  R    E   + G T
Sbjct: 4   REIIFDTETTGLDPRGGDRVTELGCVEVIDLIPTGKDLRILINPE-RDIPAEVTAVTGHT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E LKD+P F+ I  +F DF   +++  +AHNA FD+GFIN EL+R  K  +  +R IDT
Sbjct: 63  WEMLKDEPKFAEIVDQFLDFI--EDSTLVAHNAMFDMGFINMELERCGKPIIPKARFIDT 120

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            +IAR K P +   L++LCKR+ +++  R+KHGAL+DS+LL++VY+++  GG + +  F 
Sbjct: 121 AAIAREKFPGAPASLDALCKRFDVSLDSRTKHGALIDSYLLAEVYLEL-NGGREQSLSFT 179

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            ++         TV   +   R K L + +T+ E   H + I  +  + +W
Sbjct: 180 GSDG-----GDGTVVYPTRAARPKSLPSLVTERERAAHAEFISEM-DDPLW 224


>gi|325914917|ref|ZP_08177249.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538810|gb|EGD10474.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 244

 Score =  221 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 88/239 (36%), Positives = 133/239 (55%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           T EFL DKP F  +  EF  + +   AE I HNA FD+GF++ EL  +       +D + 
Sbjct: 60  TLEFLADKPLFGDVVEEFLAYID--GAELIIHNAAFDLGFLDNELSLLGDGYGRIIDRAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  +HR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F    +  +   E    +     L   +P    +T  E   H+  +  L K    A+WD
Sbjct: 178 FA-SADAGQNSNESSGMIAFDPALLLPRPRVV-VTASESQAHEARLAQLRKKAGRALWD 234


>gi|117923346|ref|YP_863963.1| DNA polymerase III subunit epsilon [Magnetococcus sp. MC-1]
 gi|117607102|gb|ABK42557.1| DNA polymerase III, epsilon subunit [Magnetococcus sp. MC-1]
          Length = 237

 Score =  221 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 140/239 (58%), Gaps = 12/239 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTG D K   RIIEIG VEL++  K +   Q ++ P  R+   +A K+HGIT
Sbjct: 3   RLIVLDTETTGFDPKEGHRIIEIGCVELVNMRKGDER-QWYVNPE-REIPADATKVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125
           D  + + P F  I+ EF  F  E +   + HNA+FD+ F+NAEL R+NK  + P  R ID
Sbjct: 61  DADVANSPKFKEIYHEFLAFIGEDS--LVIHNAEFDMRFLNAELTRLNKRLVMPMERAID 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +ARRK P S  +L++LCKR G+  S R+ HGALLD+HLL++VY+++M GG+Q +   
Sbjct: 119 TIPLARRKFPGSTVNLDALCKRLGVDNSGRTFHGALLDAHLLAEVYVELM-GGNQFSLEM 177

Query: 186 KTNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQTLGKN---AIWDR 239
             +E     +   +  + +        P   ++++E    H+  +Q L +    A+W++
Sbjct: 178 AADESGRIAQPSDSPKDGAPGPGLMMAPRDWQVSEESTQAHEAFLQLLDRESGGAVWNK 236


>gi|312115401|ref|YP_004012997.1| DNA polymerase III subunit epsilon [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220530|gb|ADP71898.1| DNA polymerase III, epsilon subunit [Rhodomicrobium vannielii ATCC
           17100]
          Length = 241

 Score =  221 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 103/236 (43%), Positives = 136/236 (57%), Gaps = 10/236 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTGLD K   RIIE+  VEL +Y  T   +  +  P  R    EA  +HG+
Sbjct: 1   MRELVLDTETTGLDPKSGHRIIELACVELHNYIPTGVFWHWYFNPE-RSVPREATAIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRII 124
           TD FL DKP F +I  +       + A  I HNA FDVGF+N E Q++    P+   R+ 
Sbjct: 60  TDGFLADKPLFGAIAPDIVKVL--EGARLIIHNASFDVGFLNFEFQKLGYQQPISMERVT 117

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++ARRKHP S N+L++LC+RYGI  S R+KHGALLDS LL+DVY++++ G  Q    
Sbjct: 118 DTLALARRKHPGSPNNLDALCRRYGIDNSTRTKHGALLDSELLADVYLRLI-GAEQAGLD 176

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
                     E        ++  R KPL +R+T EE   H   + TLG  AIW RY
Sbjct: 177 LGARS----AEVTVAGQAAAVQVRLKPLPSRLTAEEAAAHAAFVATLGDKAIWKRY 228


>gi|238762660|ref|ZP_04623629.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC
           33638]
 gi|238698965|gb|EEP91713.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC
           33638]
          Length = 259

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 83/252 (32%), Positives = 134/252 (53%), Gaps = 11/252 (4%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++    R+IV D ETTG++      +  +IIEIGAVE+++   T R F V++ P+ R   
Sbjct: 6   MQVTPTRQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPD-RLVD 64

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PEA  +HGI+DEFL DKP+F+ I SEF +F   + AE + HNA FD+GF++ E + + +D
Sbjct: 65  PEAYGVHGISDEFLADKPTFADIASEFLEFI--RGAELVIHNAAFDIGFMDYEFRMLQQD 122

Query: 117 PLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                    I D+L +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ 
Sbjct: 123 IPKTETFCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLA 182

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           M  G + ++F  + ++ +    E                         +     +   G 
Sbjct: 183 MTGGQTSLSFSMEGDQSQNNSSEDIQRITRPASGLKIIYAAEEEIAAHESRLDLVMKKGG 242

Query: 234 NAIWDRYISSNQ 245
           + +W   + +  
Sbjct: 243 SCLWRMPLETED 254


>gi|253999157|ref|YP_003051220.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4]
 gi|253985836|gb|ACT50693.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4]
          Length = 234

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 93/236 (39%), Positives = 138/236 (58%), Gaps = 14/236 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL   +  RIIEI AVE+++   T++ + V+L P+ R+    A ++HGI
Sbjct: 1   MRQIFLDTETTGLYPAQGHRIIEIAAVEVINRRITSQHYHVYLNPD-REIDAGAQEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL+DKP F+ +  EF DF   Q++E I HNA FDVGF+NAEL RI K  ++   S I
Sbjct: 60  TLEFLQDKPRFADVVGEFLDFV--QDSELIIHNAPFDVGFLNAELGRIEKPGIESVASGI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +A+   P  RN+L++LC+ +GI  S R+ HGALLD+ LL+DVY+ M  G  Q + 
Sbjct: 118 IDTLKMAKEMRPGQRNNLDALCRHFGIDNSKRTLHGALLDAELLADVYLAMTRG--QESL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL--GKNAIW 237
                +     ++   +   ++ ++         + E   H + +Q L  G   +W
Sbjct: 176 IIDMLDTPVHNDDNDALQIQAISQK----VVLADETETAAHQQYLQGLAKGGACVW 227


>gi|120611120|ref|YP_970798.1| DNA polymerase III subunit epsilon [Acidovorax citrulli AAC00-1]
 gi|120589584|gb|ABM33024.1| DNA polymerase III, epsilon subunit [Acidovorax citrulli AAC00-1]
          Length = 243

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 90/238 (37%), Positives = 130/238 (54%), Gaps = 14/238 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++  DRIIE+G VELL+   T     ++  P  R +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSAEGGDRIIELGCVELLNRKLTGNNLHLYFNPE-RDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124
           +EFLKDKP F+ +  E  ++   Q AE I HNA FDVGF+N EL+   +         + 
Sbjct: 62  NEFLKDKPKFAEVVDEILEYL--QGAEIIIHNAAFDVGFLNKELELTGRPAFTSYVESVT 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +A+  +P  RN L++LC R G+  S R+ HGALLD+ LL+DVYI +  G   +   
Sbjct: 120 DTLVMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLIA 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
               E     E    +  + L     P+    +++EL  HD+ +  +    G   IW 
Sbjct: 180 DDAQE---GDETAVRLAPVDLSAFTLPVLL-ASEQELAAHDEVLAQIDKASGGKTIWK 233


>gi|225677154|ref|ZP_03788153.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590821|gb|EEH12049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 231

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 93/238 (39%), Positives = 140/238 (58%), Gaps = 11/238 (4%)

Query: 3   RKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            ++K+R+IV D ETTGLD     RIIEIG VEL++   T + F  +L P  R     + K
Sbjct: 1   MESKLREIVLDTETTGLDTGSGHRIIEIGCVELINRIPTGKVFHRYLNPE-RDIPYHSFK 59

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI++EFL+DKP FS +  EF DF +  N   + HNA+FDV F+N EL ++N   +   
Sbjct: 60  IHGISEEFLEDKPLFSDVALEFLDFIS--NDILVIHNAEFDVKFLNMELSKLNAGLISSD 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           R++DTL +AR+K   S   LN+LCKR+ I++ +R  HGAL+D+ LL+ VY+++  G    
Sbjct: 118 RVLDTLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTF 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
            F  + N+D      +  V N++      P       EE+DEH K +  +  N +W++
Sbjct: 178 LFDNECNQDSNSTFVQHKVRNLT------PREHSPNSEEIDEHKKLLDKIN-NTLWNK 228


>gi|300703774|ref|YP_003745376.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum
           CFBP2957]
 gi|299071437|emb|CBJ42756.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum
           CFBP2957]
          Length = 242

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/240 (36%), Positives = 130/240 (54%), Gaps = 15/240 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR+IEIG VEL++   T R    ++ P  R+    A+ +HGI
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T+EF+ DKP F+ + +E  D+   Q AE I HNA FD+GF++ E +R+            
Sbjct: 60  TNEFVADKPKFAEVVAEIRDYV--QGAEAIIHNAAFDLGFLDMEFRRLGLPSFREHLDGH 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  ARR  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G + +  
Sbjct: 118 IDTLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWDR 239
                 +    E       + L   + P+    T+ E   H   ++ +    G   +W R
Sbjct: 178 DMLEGGETAATEAA----AVDLSGLELPILL-ATEVEATAHATVLKEIDKASGGKTVWSR 232


>gi|289664175|ref|ZP_06485756.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668767|ref|ZP_06489842.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 244

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/239 (36%), Positives = 132/239 (55%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           T EFL DKP F  +  EF  + +   AE I HNA FD+GF++ EL  +       ++ + 
Sbjct: 60  TLEFLADKPLFGEVVDEFLAYID--GAELIIHNAAFDLGFLDNELSLLGDNYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F    +  +        +     L   +P    +T  E   H+  +  L K    A+WD
Sbjct: 178 FA-SADAGQQTNSASGMIAFDPALLLPRPRVA-VTASESQAHEARLAQLRKKAGRALWD 234


>gi|241663345|ref|YP_002981705.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12D]
 gi|240865372|gb|ACS63033.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12D]
          Length = 242

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 91/237 (38%), Positives = 128/237 (54%), Gaps = 9/237 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL++   DR+IEIG VE+++   T R    ++ P  R+    A+ +HGI
Sbjct: 1   MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T+EF+ DKP F+ I +E  D+   Q AE I HNA FD+GF++ E QR+   P        
Sbjct: 60  TNEFVADKPKFAEIVNEIRDYV--QGAEAIIHNAAFDLGFLDMEFQRLGLPPFREHLSGH 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  AR+  P  RN L++LC R GI+ +HR+ HGALLD+ LL++VY+ M  G  Q   
Sbjct: 118 IDTLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRG--QNTL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-GKNAIWDR 239
                E       +    ++S L+    L T    E      K I    G   +W R
Sbjct: 176 VIDMLESGEGASAEAVAVDLSALQLPVLLATEAEAEAHAGVLKEIDKASGGKTVWTR 232


>gi|114328806|ref|YP_745963.1| DNA polymerase III subunit epsilon [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316980|gb|ABI63040.1| DNA polymerase III, epsilon chain [Granulibacter bethesdensis
           CGDNIH1]
          Length = 225

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/232 (37%), Positives = 122/232 (52%), Gaps = 12/232 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++FD ETTG D    DRI+EI A+EL +   T  TF   + P  R    EA ++HG T
Sbjct: 3   RSVLFDTETTGFDPLTGDRILEIAALELFNDLPTGNTFHTLVDP-CRDVPEEATRVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E L+ KP F+ I  +   FF       IAHNA FD  F+NAE  R+ K  LDP+R+IDT
Sbjct: 62  AEMLRGKPLFADIVEDLLAFFGRD--PLIAHNAPFDFNFLNAEFARLGKPKLDPARMIDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +A+ + P   N L++LC+R+ I +S R+ H ALLD  LL++VYI++  GG Q   G  
Sbjct: 120 LVMAKARFPGMPNSLDALCRRFSIDLSQRTTHNALLDCKLLAEVYIELT-GGRQRGLGLT 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
             E      E +   +        P      +  L  H+  I  L K+ +W 
Sbjct: 179 EAERAAAVAEYEHSAS------RVPRPIMPDEATLAAHEAFIDRL-KDPVWR 223


>gi|329296922|ref|ZP_08254258.1| DNA polymerase III subunit epsilon [Plautia stali symbiont]
          Length = 237

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 87/244 (35%), Positives = 132/244 (54%), Gaps = 15/244 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M   N  R+IV D ETTG++      +  RIIEIGAVE+++   T   F ++L P+ R  
Sbjct: 1   MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLV 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI---NAELQR 112
            PEA  +HGI DEFL DKP+F+ I  EF D+   + AE + HNA FD+GF+    A LQR
Sbjct: 59  DPEAFGVHGIADEFLADKPTFAQIADEFLDYI--RGAELVIHNASFDIGFMDYEFAMLQR 116

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                    +I D+L++A +  P  RN L++LC R+ I  S R+ HGALLD+ +L++V++
Sbjct: 117 DIGKTETFCQITDSLAMASKMFPGKRNSLDALCNRFEIDNSKRTLHGALLDAGILAEVFL 176

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M   G Q +  F    ++  + E + +  I +           + EE+  H+  +  + 
Sbjct: 177 TMT--GCQTSLAFSMEGEQSNQVEGEHIQRI-VRPGAGLRVVSASDEEIVAHESRLDLVQ 233

Query: 233 KNAI 236
           K   
Sbjct: 234 KKGR 237


>gi|197335831|ref|YP_002156764.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11]
 gi|197317321|gb|ACH66768.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11]
          Length = 223

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 87/220 (39%), Positives = 130/220 (59%), Gaps = 10/220 (4%)

Query: 22  KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFS 81
           +  RI+EIGAVE+++   T   F V++ P+ R    EA+ +HGITDEFL DKP +  I  
Sbjct: 10  EGHRIVEIGAVEIINRKLTGNHFHVYIKPD-RLIDLEAIDVHGITDEFLYDKPEYKDIHD 68

Query: 82  EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSRIIDTLSIARRKHPSSR 138
           EF +F   + AE +AHNA FDVGF++ E  ++NK         +I DTL++A++  P  R
Sbjct: 69  EFLEFI--KGAELVAHNAPFDVGFMDYEFSKLNKLIGTTDQYCKITDTLAMAKKIFPGKR 126

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
           N+L+ LC+RYGI  SHR+ HGALLD+ +L+DVY+ M  G + ++F    N     +E  K
Sbjct: 127 NNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLSFSSGDNSSDSDEETIK 186

Query: 199 TVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
            + +     R      R T +EL+ H+K +  +G   +W 
Sbjct: 187 RLNS----GRKGLKVLRATADELEAHEKRLDIVGDACLWR 222


>gi|16124261|ref|NP_418825.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15]
 gi|221232944|ref|YP_002515380.1| DNA polymerase III subunit epsilon [Caulobacter crescentus NA1000]
 gi|13421091|gb|AAK21993.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15]
 gi|220962116|gb|ACL93472.1| DNA polymerase III, epsilon chain [Caulobacter crescentus NA1000]
          Length = 237

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/235 (36%), Positives = 131/235 (55%), Gaps = 9/235 (3%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTG D K  DR++EIG +E++D+  T R+F  +  P  R    EA K+HG++
Sbjct: 3   REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEYCDP-LRDMPAEAEKVHGLS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             FL  KP F  I   F DF    ++  +AHNA FD  F+N EL++  K P+   R +DT
Sbjct: 62  SAFLTGKPKFHEIADRFLDFVG--DSVVVAHNAAFDRQFVNFELEKCGKAPIHEERWVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L++A+++ P   N L++LCKR+ I++  R KHGAL+D+HLL++VY+++  GG +      
Sbjct: 120 LAMAKKRFPGMYNSLDALCKRFKISLESRDKHGALIDAHLLAEVYLEL-QGGKERALELT 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-LGKNAIWDRY 240
                       T        R +PL  R T  E + H   ++  L   A+W ++
Sbjct: 179 ---HSTGAMAVSTAIQGVYAARSRPLAPRSTDAEREIHAAWVRKNLKDKALWIQF 230


>gi|325920993|ref|ZP_08182879.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325548527|gb|EGD19495.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC
           19865]
          Length = 244

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 87/239 (36%), Positives = 135/239 (56%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           T EFL DKP F+ +  EF  + +   AE I HNA FD+GF++ EL  +       ++ + 
Sbjct: 60  TLEFLADKPLFADVVEEFLAYID--GAELIIHNAAFDLGFLDNELSLLGDNYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F    +  +  ++    +     L   +P    +T  E   H+  +  L K    A+WD
Sbjct: 178 FA-SADAGQSTQDADGMISFDPALLLPRPRVA-VTASESQAHEARLAQLRKKAGRALWD 234


>gi|309782421|ref|ZP_07677145.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA]
 gi|308918758|gb|EFP64431.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA]
          Length = 242

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 91/237 (38%), Positives = 128/237 (54%), Gaps = 9/237 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL++   DR+IEIG VE+++   T R    ++ P  R+    A+ +HGI
Sbjct: 1   MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T+EF+ DKP F+ I +E  D+   Q AE I HNA FD+GF++ E QR+   P        
Sbjct: 60  TNEFVADKPKFAEIVNEIRDYV--QGAEAIIHNAAFDLGFLDMEFQRLGLPPFREHLSGH 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  AR+  P  RN L++LC R GI+ +HR+ HGALLD+ LL++VY+ M  G  Q   
Sbjct: 118 IDTLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRG--QNTL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-GKNAIWDR 239
                E       +    ++S L+    L T    E      K I    G   +W R
Sbjct: 176 VIDMLESGEGASAEAVAVDLSALQLPVLLATEAEAEAHAGVLKEIDKASGGKTVWTR 232


>gi|121605184|ref|YP_982513.1| DNA polymerase III subunit epsilon [Polaromonas naphthalenivorans
           CJ2]
 gi|120594153|gb|ABM37592.1| DNA polymerase III, epsilon subunit [Polaromonas naphthalenivorans
           CJ2]
          Length = 240

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 98/239 (41%), Positives = 140/239 (58%), Gaps = 16/239 (6%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL ++N DRIIEIG VEL+    T      +L P GR +  +ALK+HGI
Sbjct: 1   MRQIVLDTETTGLSAENGDRIIEIGCVELVRRKLTGNNKHFYLNP-GRNSHEDALKVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           ++EFLKDKP FS++  E  D+   Q AE I HNA FDV F+N EL+ I ++PL     ++
Sbjct: 60  SNEFLKDKPKFSAVVDELLDYL--QGAEIIIHNAPFDVSFLNKELEIIGREPLMHCVAKV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L +A+   P  RN LN+LC R  +  S R+ HGALLD+ LL+DVYI +  G + +  
Sbjct: 118 TDSLMMAKEMFPGKRNSLNALCDRLEVDNSGRTLHGALLDAELLADVYINLTRGQNSLMM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
              +       E     P + L   + P+ +  +++E+D H+K + TL K      +W 
Sbjct: 178 DIGSPVQTGESE-----PLVDLRLFELPVLS-ASEQEMDAHEKVLLTLDKASRGKTVWR 230


>gi|157826195|ref|YP_001493915.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford]
 gi|157800153|gb|ABV75407.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford]
          Length = 229

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 84/236 (35%), Positives = 136/236 (57%), Gaps = 11/236 (4%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            + +R+I+ D ETTGLD +   RI+EI A+E+++   T R F  ++ P  R    +A ++
Sbjct: 1   MSSLREIILDTETTGLDPRQGHRIVEIAAIEMMNKVLTGRNFHFYINPE-RDIPFDAYRI 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI+ EFLKDKP F +I  +F +F    +++ + HNA FD+ F+N EL   +R     L+
Sbjct: 60  HGISGEFLKDKPLFHTIADDFLEFIA--DSKLVIHNAPFDIKFLNHELSLLKRAEIKLLE 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            S  IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY+++  GG 
Sbjct: 118 LSNAIDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELT-GGR 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           Q +F      D+        +  ++       +  + TKEEL +H + + ++ K A
Sbjct: 177 QSSFKMV---DKSAGINNLAINQVNSKTEQASIVIKPTKEELQKHKEFLSSILKTA 229


>gi|123441273|ref|YP_001005260.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088234|emb|CAL11023.1| DNA polymerase III, epsilon chain [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 238

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 81/234 (34%), Positives = 133/234 (56%), Gaps = 12/234 (5%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
           G+  +  +IIEIGAVE+++   T R F V++ P+ R   PEA  +HGI+DEFL DKP+F+
Sbjct: 5   GVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGVHGISDEFLADKPTFA 63

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SRIIDTLSIARRKH 134
            I  EF +F   + AE I HNA FD+GF++ E + + +D         I D+L +ARR  
Sbjct: 64  DITPEFLEFI--RGAELIIHNAAFDIGFMDYEFRMLQQDIPKTETFCTITDSLLLARRLF 121

Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFK 194
           P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G + ++F  +   D+   
Sbjct: 122 PGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLSFSME--GDQTQN 179

Query: 195 EEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWDRYISSNQ 245
           E  + +  I+            T++E+  H+  +  +   G + +W   + ++ 
Sbjct: 180 ESSEDIQRITR-PASGLKIIYATEDEIAAHESRLDLVMKKGGSCLWRMPLETDD 232


>gi|308049181|ref|YP_003912747.1| DNA polymerase III, epsilon subunit [Ferrimonas balearica DSM 9799]
 gi|307631371|gb|ADN75673.1| DNA polymerase III, epsilon subunit [Ferrimonas balearica DSM 9799]
          Length = 240

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 94/252 (37%), Positives = 142/252 (56%), Gaps = 24/252 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M +   +R+IVFD ETTG++          ++IEIG VEL++   T RT+ V++ P+ R 
Sbjct: 1   MTQAADLRQIVFDTETTGMNQGAGPHYLGHKLIEIGCVELINRKPTGRTYHVYIQPD-RP 59

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              EA+++HGITDEFL  KP F  I  EF++F   + AE IAHNA FD+GFI+ E + + 
Sbjct: 60  VDEEAIQVHGITDEFLVGKPRFGEIAEEFFEFI--RGAELIAHNANFDIGFIDYEFEMLG 117

Query: 115 K--DPLDPSRIIDTLSIARRK----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           +     D   ++DTL +AR K          +L++LC+ YGI  SHR+ HGALLD+ +L+
Sbjct: 118 RFGKLEDHCSLVDTLQLAREKKNRGEIQGNLNLDALCRFYGIDNSHRTLHGALLDAEILA 177

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
           DV++ M  G  ++NFG    +        +         R +      T +ELD H K +
Sbjct: 178 DVFLYMTGGQVKMNFGSGDGDAGGIIRLPED--------RRRTKVVLATADELDNHTKRM 229

Query: 229 QTLGKNAIWDRY 240
           + +  +AIW R+
Sbjct: 230 ELVS-DAIWLRH 240


>gi|240950342|ref|ZP_04754612.1| DNA polymerase III subunit epsilon [Actinobacillus minor NM305]
 gi|240295153|gb|EER45972.1| DNA polymerase III subunit epsilon [Actinobacillus minor NM305]
          Length = 253

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 90/249 (36%), Positives = 141/249 (56%), Gaps = 17/249 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M+ +   R++V D ETTG++          IIEIGAVE+++   T RTF V++ P  R+ 
Sbjct: 1   MLEQEIHRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             EA+K+HGIT+EFL+DKP+F+ I  EF  F   + AE + HNA FDVGF++ E   +  
Sbjct: 60  EEEAIKVHGITNEFLQDKPTFAEIVDEFVAFI--KGAELVIHNAPFDVGFMDHEFSFLAN 117

Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P    +   + D+L++AR+ +P  RN+L++LC R GI  S R  HGALLD+ +L+DV++
Sbjct: 118 PPPKTAEMCTVTDSLALARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD----KTI 228
            MM GG       + +++    +  +  P I+    +  +  +  + EL+ H        
Sbjct: 178 -MMTGGQIALLAEEEHDENPQVDLLEEGPKIAFDTSN-SVILKADESELEAHQLFLKLLY 235

Query: 229 QTLGKNAIW 237
           +   KN IW
Sbjct: 236 KKSKKNCIW 244


>gi|121997071|ref|YP_001001858.1| DNA polymerase III subunit epsilon [Halorhodospira halophila SL1]
 gi|121588476|gb|ABM61056.1| DNA polymerase III, epsilon subunit [Halorhodospira halophila SL1]
          Length = 243

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 91/240 (37%), Positives = 131/240 (54%), Gaps = 16/240 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTG+D  +  RIIEIG VEL+    T   F  +L P+ R     A  +HG+
Sbjct: 1   MRQILLDTETTGMDPTEGHRIIEIGCVELVRRRLTGNNFHEYLNPD-RAVDEGAENVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122
           ++ FL DKP F+ I   F D+   Q+AE I HNA FDVGFI+AEL R+        D   
Sbjct: 60  SNRFLADKPRFADIARRFVDYV--QDAELIIHNAPFDVGFIDAELARLGPAWGQLEDYCT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I D+L +ARR HP  R  L++LCKRY +  S R  HGALLDS LL++VY+ M  G  +++
Sbjct: 118 ITDSLQMARRMHPGQRCSLDALCKRYSVDGSRRELHGALLDSELLAEVYLAMTGGQGKLS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
              +  E    +  ++        +R +       + E + H++ +Q +    G  A+W 
Sbjct: 178 LEGEGLEPGGAEPVQRLS-----AERPRLRVPEPGELEREAHEQLLQRIEATCGGPALWR 232


>gi|145589210|ref|YP_001155807.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047616|gb|ABP34243.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 236

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 81/238 (34%), Positives = 130/238 (54%), Gaps = 16/238 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+    DR+IEIG VE++D   T+RTF  ++ P  R     A  +HG+
Sbjct: 1   MRQVILDTETTGLNPATGDRVIEIGCVEVIDRRLTDRTFHYYINPE-RDIDAGAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           + EFL DKP F +I  +  +F +   AE + HNA FD+GF++ E   + + P     S++
Sbjct: 60  SREFLSDKPVFGNIAEQLIEFVD--GAEIVIHNAAFDLGFLDNEFALLKRPPFRGLASKV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  AR+  P  RN L++LC+R+ I+  HR+ HGALLD+ LL++VYI M  G   ++ 
Sbjct: 118 IDTLLDARQMFPGKRNSLDALCERFSISNKHRTLHGALLDAQLLAEVYIAMTRGQEDLS- 176

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG----KNAIW 237
                +     +    +  +    R        + ++   H+K +  +     K+ +W
Sbjct: 177 -IDLIDYTVGADSSGHMKELPTDLR----VLAASDDDCQLHEKILAEIAKASKKDPVW 229


>gi|78046646|ref|YP_362821.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925275|ref|ZP_08186679.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118]
 gi|78035076|emb|CAJ22721.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325544321|gb|EGD15700.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118]
          Length = 244

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 88/239 (36%), Positives = 133/239 (55%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           T EFL DKP F  +  EF  + +   AE I HNA FD+GF++ EL  +       ++ + 
Sbjct: 60  TLEFLADKPLFGEVVDEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F    +  +        +     L   +P    +T  EL  H+  +  L K    A+WD
Sbjct: 178 FA-SADAGQQTDAASGVIAFDPALLLPRPRIA-VTASELQAHEARLAQLRKKAGRALWD 234


>gi|221066578|ref|ZP_03542683.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
 gi|220711601|gb|EED66969.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
          Length = 243

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 88/231 (38%), Positives = 130/231 (56%), Gaps = 9/231 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL +   DR+IE+G VEL++   T     ++    GR + P+AL++HGIT
Sbjct: 3   RQIVLDTETTGLSAIDGDRLIELGCVELVNRKLTGNNLHLYFN-AGRDSHPDALRVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124
            EFLKDKP F     E W++   Q AE I HNA FD+GF+N EL+   + PL      +I
Sbjct: 62  TEFLKDKPRFEEKIDEIWEYL--QGAELIIHNAPFDLGFLNNELKLAKRPPLKQCVGGVI 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +A+  +P  RN L+SLC R G+  S+R+ HGALLD+ LL+DVYI +  G   +   
Sbjct: 120 DTLVMAKEMYPGKRNSLDSLCDRLGVDNSNRTLHGALLDAELLADVYINLTRGQDALLMS 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            +  +            ++S  +       R  ++E   HD  ++ + K++
Sbjct: 180 EEPADAPAAGTMIVASVDLSSFRLP---VLRANEQEQAAHDDVLKQMDKSS 227


>gi|332525346|ref|ZP_08401511.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
 gi|332108620|gb|EGJ09844.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
          Length = 234

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 94/240 (39%), Positives = 139/240 (57%), Gaps = 16/240 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL +   DR++E+G +E+L+   + RT   +L P  R ++PEA+K+HG+
Sbjct: 1   MRQIFLDTETTGLSAVDGDRLVEVGCIEMLNRRLSGRTLHHYLNPE-RSSNPEAVKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           TDEFL DKP F+++  EF +F   ++AE I HNA FDVGF++AEL R+ K  L      I
Sbjct: 60  TDEFLADKPLFAAVADEFIEFV--RDAELIIHNAAFDVGFLDAELTRLGKPRLVELGCTI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L +AR+  P   N L++LCKR  +  S+R+ HGALLD+ LL++VYI+M  G   +  
Sbjct: 118 TDSLVMARQLFPGKANSLDALCKRLEVDNSNRALHGALLDAGLLAEVYIRMTRGQDSL-- 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDR 239
                +D         V  I L +   P+    + EE   H+  +  L K +    IW +
Sbjct: 176 ---VIDDAQEGGTALEVAAIDLSQFTLPVLV-ASDEEAAAHEAVLAELDKASNGRTIWRQ 231


>gi|264678862|ref|YP_003278769.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2]
 gi|299532427|ref|ZP_07045819.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
 gi|262209375|gb|ACY33473.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2]
 gi|298719665|gb|EFI60630.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
          Length = 243

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 91/231 (39%), Positives = 131/231 (56%), Gaps = 9/231 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL +   DR+IE+G VEL++   T     ++    GR + P+AL++HGIT
Sbjct: 3   RQIVLDTETTGLSAIDGDRLIELGCVELVNRKLTGNNLHLYFN-AGRDSHPDALRVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124
            EFLKDKP F     E W++   Q AE I HNA FD+GF+N EL+   + PL      ++
Sbjct: 62  TEFLKDKPRFEEKIDEIWEYL--QGAELIIHNAPFDLGFLNNELKLAKRPPLKQCVGGVL 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +A+  +P  RN L+SLC R G+  S+R+ HGALLD+ LL+DVYI +  G  Q    
Sbjct: 120 DTLVMAKEMYPGKRNSLDSLCDRLGVDNSNRTLHGALLDAELLADVYINLTRG--QDALL 177

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
                          VP++ L     P+  R  ++E   HD  ++ + K++
Sbjct: 178 MTEEPADAPAAGAIVVPSVDLSSFKLPVL-RANEQEQQSHDDVLKQMDKSS 227


>gi|113460748|ref|YP_718815.1| DNA polymerase III subunit epsilon [Haemophilus somnus 129PT]
 gi|170719139|ref|YP_001784286.1| DNA polymerase III subunit epsilon [Haemophilus somnus 2336]
 gi|112822791|gb|ABI24880.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT]
 gi|168827268|gb|ACA32639.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 2336]
          Length = 252

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 93/246 (37%), Positives = 136/246 (55%), Gaps = 18/246 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+I+ D ETTG++      +   IIEIGAVE+++   T R   +++ P+ R   PEA+K+
Sbjct: 9   RQIILDTETTGMNEFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPD-RLVDPEAIKV 67

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDP 120
           HGITDE L DKP FS+I  EF DF   + AE I HNA FD+GF++ E ++ N   +  D 
Sbjct: 68  HGITDEMLADKPDFSAIAQEFIDFI--KGAELIIHNAPFDIGFMDYEFKKHNFNINTADI 125

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             I DTL +AR+ +P  RN L++LC R  I  S R+ HGALLD+ +L DVY+ M  G + 
Sbjct: 126 CLITDTLQMARQMYPGKRNSLDALCDRLNIDNSKRTLHGALLDAEILGDVYLAMTGGQTS 185

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG----KNAI 236
           + FG + +      EE       +       L    T+EE   H   ++ L     +N +
Sbjct: 186 L-FGDEEHTPIITLEENIHQHTTNTHNFKLLLP---TEEEKLAHQDYLKLLNQKSKENCL 241

Query: 237 WDRYIS 242
           W +  +
Sbjct: 242 WFKRNT 247


>gi|307248305|ref|ZP_07530330.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307263945|ref|ZP_07545548.1| hypothetical protein appser13_13530 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306855175|gb|EFM87353.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306870707|gb|EFN02448.1| hypothetical protein appser13_13530 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 239

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 11/224 (4%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSE 82
              IIEIGAVE+++   T RTF V++ P  R+   EA+K+HGIT+EFL+DKP F+ +  E
Sbjct: 10  GHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVDEEAIKVHGITNEFLQDKPVFAEVADE 68

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSRIIDTLSIARRKHPSSRN 139
           F +F   + AE I HNA FDV F++ E   +   P    +   + D+L++AR+ +P  RN
Sbjct: 69  FIEFI--KGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCSVTDSLAVARKMYPGKRN 126

Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT 199
           +L++LC R GI  S R  HGALLD+ +L+DV++ MM GG     G +             
Sbjct: 127 NLDALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLALLGEEDATATHENVADLG 185

Query: 200 VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239
           +  I+  +    +   +++EE   H++ ++ + K    N IW R
Sbjct: 186 LGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWMR 229


>gi|313201259|ref|YP_004039917.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688]
 gi|312440575|gb|ADQ84681.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688]
          Length = 234

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 92/236 (38%), Positives = 136/236 (57%), Gaps = 14/236 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL   +  RIIEI AVE+++   T++ + V+L P+ R+    A ++HGI
Sbjct: 1   MRQIFLDTETTGLYPAQGHRIIEIAAVEVINRRITSQHYHVYLNPD-REIDAGAQEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           T EFL+DKP F+ +  EF DF   Q++E I HNA FDVGF+NAEL RI K  ++   S I
Sbjct: 60  TLEFLQDKPRFADVVGEFLDFV--QDSELIIHNAPFDVGFLNAELGRIEKPGIESVASGI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +A+   P  RN+L++LC+ +GI  S R+ HGALLD+ LL+DVY+ M  G   +  
Sbjct: 118 IDTLKMAKEMRPGQRNNLDALCRHFGIDNSKRTLHGALLDAELLADVYLAMTRGQESLI- 176

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL--GKNAIW 237
                +     ++   +   ++  +         + E   H + +Q L  G   +W
Sbjct: 177 -IDMLDTPVHNDDNDALQIQAISHK----VVLADETETAAHQQYLQGLAKGGACVW 227


>gi|330994285|ref|ZP_08318213.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1]
 gi|329758752|gb|EGG75268.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1]
          Length = 226

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 86/234 (36%), Positives = 128/234 (54%), Gaps = 14/234 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I+FD ETTGLD  K DR+IEI A+EL+    T R F V + P  R    EA ++HG T
Sbjct: 3   RTILFDTETTGLDPLKGDRVIEIAALELVGDLPTGRNFHVLIDPE-RDVPEEASRVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+ KP F+ + S F +F  +     IAHNA+FD GF+NAEL R  +  LD  R++DT
Sbjct: 62  RADLEGKPKFAEVASGFLEFVGDD--PLIAHNARFDFGFLNAELARAGQPVLDMGRMVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +AR + P   N L++LC+R+ I +S R+ H ALLD  LL+ VY+++  GG Q      
Sbjct: 120 LDMARERFPGMPNSLDALCRRFSIDLSERTTHNALLDCRLLAAVYLELT-GGRQRGLSLA 178

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE--ELDEHDKTIQTLGKNAIWD 238
                  ++    +     ++       R+T +  E+  H+  +  L  + +W+
Sbjct: 179 V------EDGGGGIATYDYVRPAGHAVVRVTPDAAEIAAHETFVARLS-SPLWN 225


>gi|94496604|ref|ZP_01303180.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58]
 gi|94423964|gb|EAT08989.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58]
          Length = 230

 Score =  218 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 90/232 (38%), Positives = 133/232 (57%), Gaps = 7/232 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+FD ETTG D    DR++EIG +EL++   T RTF  +  P  R     A  +HG+
Sbjct: 1   MREIIFDTETTGFDPASGDRMVEIGCIELVNRVPTGRTFHAYYHPE-RDMPAAAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + +FL   P FS    E  DF   +++  +AHNA+FD GF+N EL       +   R+ID
Sbjct: 60  SADFLAKHPVFSLGALELLDFL--EDSPLVAHNARFDFGFLNHELTLCGHPQVGMHRMID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T++IAR+ HP +++ L++LC RYGI  SHR KHGALLD+ LL+ +YI++  GG QI  G 
Sbjct: 118 TVAIARQLHPGAKHSLDALCTRYGIDRSHRVKHGALLDAELLAQLYIELT-GGRQIGLGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
              E +     + T   +    R   +F   + +EL+ H   + TL +  +W
Sbjct: 177 AQEEAKEIVRVELTESPVVRPVRPARVFM-ASAQELERHAAFVATLDR-PLW 226


>gi|307252915|ref|ZP_07534803.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859553|gb|EFM91578.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 239

 Score =  218 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 11/224 (4%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSE 82
              IIEIGAVE+++   T RTF V++ P  R+   EA+K+HGIT+EFL+DKP F+ +  E
Sbjct: 10  GHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVEEEAIKVHGITNEFLQDKPVFAEVADE 68

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSRIIDTLSIARRKHPSSRN 139
           F +F   + AE I HNA FDV F++ E   +   P    +   + D+L++AR+ +P  RN
Sbjct: 69  FIEFI--KGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCSVTDSLAVARKMYPGKRN 126

Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT 199
           +L++LC R GI  S R  HGALLD+ +L+DV++ MM GG     G +             
Sbjct: 127 NLDALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLALLGEEDATATHENVADLG 185

Query: 200 VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239
           +  I+  +    +   +++EE   H++ ++ + K    N IW R
Sbjct: 186 LGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWMR 229


>gi|224824456|ref|ZP_03697563.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224602949|gb|EEG09125.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 242

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 85/239 (35%), Positives = 129/239 (53%), Gaps = 16/239 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  +  RIIE   +E+++   T R+  +++ P  R   P+A ++HGI
Sbjct: 1   MRQIILDTETTGLEPSQGHRIIEFAGLEMVNRKLTGRSLHLYIHPE-RDIDPDAERVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           + +FL DKP F+++  E  DF   ++AE I HNA FDVGF+NAE  RI  + +    + +
Sbjct: 60  SLDFLADKPRFAAVGPEIADFL--RDAELIIHNAPFDVGFLNAEFDRIGIERVSTLCASV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL +AR + P  RN L++LC R+ I  S+R+ HGAL+D  LL +VY+ M  G + +  
Sbjct: 118 IDTLVMARDQFPGKRNSLDALCDRFEIDRSNRTLHGALIDCELLGEVYLWMTRGQNSLVM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238
                 D     +   +      +R      R   EEL  H   +  L K      +W 
Sbjct: 178 DIDL--DVGGGADLGAL----EFERKPIKILRPNAEELAAHATYLDDLDKAVKGTCLWR 230


>gi|149185255|ref|ZP_01863572.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21]
 gi|148831366|gb|EDL49800.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21]
          Length = 229

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 93/233 (39%), Positives = 130/233 (55%), Gaps = 7/233 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGLD +  DR++EIG VE++    T  TF  +  P  R     A  +HG+
Sbjct: 1   MREIVFDTETTGLDPRTGDRMVEIGCVEMVSLVPTGNTFHAYYNPE-RDMPAGAEAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  FL DKP F     E  DF    +A  IAHNA FD GF+NAEL    ++ +  SR+ID
Sbjct: 60  SAAFLSDKPLFRDTAHELLDFIG--DAPLIAHNAGFDFGFLNAELALCEREAVCMSRMID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+++A+++HP ++  L++LC RYGI  SHR KHGALLD+ LL+ VY+++  GG QI    
Sbjct: 118 TVALAKKRHPGAKLSLDALCTRYGIDRSHRVKHGALLDAELLAQVYVEL-KGGRQIGLEL 176

Query: 186 KTNEDRF-FKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                      E   V       R +      T EEL  H + +  + +N +W
Sbjct: 177 AAETAAVEITTEVVAVRKAPDGPRREARPHAPTPEELARHREFMAGI-ENPLW 228


>gi|289207686|ref|YP_003459752.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sp. K90mix]
 gi|288943317|gb|ADC71016.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. K90mix]
          Length = 238

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 92/243 (37%), Positives = 134/243 (55%), Gaps = 20/243 (8%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+  +  R+IEIG +EL +   T R    +L P+ R+    A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPSEGHRVIEIGCLELDNRRPTGRKLHEYLQPD-REIDAGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-----DPLDP 120
           T+EFL DKP F+ +  EF +F   + AE I HNA FDVGFIN EL+ + +     + ++ 
Sbjct: 60  TNEFLADKPRFADVVGEFIEFV--RGAELIIHNAPFDVGFINHELRLLGEAAPVTELVEV 117

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             ++D+L +ARR HP +RN L++LCKRY I  S R+ HGALLD+ LL+DVY+ M  G   
Sbjct: 118 CTVLDSLVMARRMHPGTRNSLDALCKRYEIDASGRTLHGALLDAELLADVYLAMTGGQVA 177

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKN----A 235
           +        D       +        +  KPL       +E   H+  ++TL +      
Sbjct: 178 LGL------DAGGDAGAEAGAPARAQRSGKPLPVIEPDADEQAAHEALLRTLDEAAGGVC 231

Query: 236 IWD 238
            W 
Sbjct: 232 RWR 234


>gi|17546591|ref|NP_519993.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum GMI1000]
 gi|17428890|emb|CAD15574.1| probable dna polymerase III (epsilon chain) protein [Ralstonia
           solanacearum GMI1000]
          Length = 242

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 81/193 (41%), Positives = 115/193 (59%), Gaps = 6/193 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR+IEIG VEL++   T R    +L P  R+    A+ +HGI
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYLNPE-REIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T+EF+ DKP F+ +  E  D+   Q AE I HNA FD+GF++ E +R+   P        
Sbjct: 60  TNEFVADKPKFAEVVDEIRDYV--QGAEAIIHNAAFDLGFLDMEFKRLGLPPFREHLAGH 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  ARR  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G + +  
Sbjct: 118 IDTLLDARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVI 177

Query: 184 GFKTNEDRFFKEE 196
               + +    E 
Sbjct: 178 DMLESGETAAAEA 190


>gi|254499192|ref|ZP_05111872.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12]
 gi|254351582|gb|EET10437.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12]
          Length = 232

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 96/232 (41%), Positives = 133/232 (57%), Gaps = 10/232 (4%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG+   +  R+IEIG VEL+D   T R F V+L P  R     A ++HGI
Sbjct: 1   MRQIVLDTETTGIGHEQGHRVIEIGCVELIDRKLTGRHFHVYLNPE-RLVDEGAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLDPSRI 123
           +DEFL+DKP F+   SEF  F     AE I HNA FD+GF+N+EL+  +  K   D   +
Sbjct: 60  SDEFLQDKPLFADKVSEFLQFVG--GAELIIHNAAFDMGFLNSELRHVQWKKKLEDYCDV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL+ AR K P  RN L++LCKR+GI   +R  HGALLD+ +L+ VY+ M  G S +  
Sbjct: 118 FDTLTYARDKFPGQRNSLDALCKRFGIDHFNRQLHGALLDAEILAFVYLAMTGGQSSLFA 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
             + N +    +    V  I+ L+   P+       ELD+H   ++ L K +
Sbjct: 178 DVEENANNTTVK----VQEIAALRLANPIVVLAEANELDQHQIFVEFLTKKS 225


>gi|171463544|ref|YP_001797657.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193082|gb|ACB44043.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 236

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 82/238 (34%), Positives = 134/238 (56%), Gaps = 16/238 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+++ D ETTGL+    DRIIEIG +E++    T+RTF  ++ P  R     A  +HG+
Sbjct: 1   MRQVILDTETTGLNPATGDRIIEIGCIEMVGRRLTDRTFHYYINPE-RDIDAGAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           + EFL DKP F++I  +  +F +   AE + HNA FD+GF++ E   + + P     S+I
Sbjct: 60  SREFLSDKPIFANIVEQLIEFVD--GAEILIHNAAFDLGFLDNEFALLKRPPFRNLASKI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL  AR+  P  RN L++LC+R+ I+  HR+ HGALLD+ LL++VY+ M  G   ++ 
Sbjct: 118 TDTLLDARQMFPGKRNSLDALCERFSISNKHRTLHGALLDAQLLAEVYVAMTRGQEDLSI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG----KNAIW 237
                    +     +  +   L  +  L +  + E+L+ H+K +  +     K+++W
Sbjct: 178 DL-----IDYTVGADSSVHTKALPTNLKLLS-ASNEDLESHEKILAEIAKASKKDSVW 229


>gi|260221145|emb|CBA29417.1| DNA polymerase III subunit epsilon [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 236

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 83/242 (34%), Positives = 125/242 (51%), Gaps = 19/242 (7%)

Query: 7   MRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           MR+IV D ETTG  + +    DR++EIG VEL++   T      +L P GR +   AL++
Sbjct: 1   MRQIVLDTETTGFYANHPDNPDRMVEIGCVELVNRKLTGNNLHFYLNP-GRDSDEGALRV 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS- 121
           HG+T +FL DKP F  I  +  D+     AE I HNA FD+ F++ EL R  + P     
Sbjct: 60  HGLTTQFLSDKPRFEEIAQQLVDYVG--GAEIIIHNAPFDLSFLDMELGRTGRKPFKTCV 117

Query: 122 -RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             ++DTL +A+   P  RN L++LC R  +  S R+ HGALLD+ LL+DVYI M  G   
Sbjct: 118 AGVLDTLVMAKEMFPGKRNSLDALCDRLEVDNSGRTLHGALLDAELLADVYINMTRGQDA 177

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----I 236
           +       ++     E+  + +I L             +E+  H+  +  L K++    +
Sbjct: 178 LIMESSAPQEAGIVVEQLDLRSIQL------PVLEANAQEMAAHEDVLSQLDKSSGGKTV 231

Query: 237 WD 238
           W 
Sbjct: 232 WK 233


>gi|288956846|ref|YP_003447187.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
 gi|288909154|dbj|BAI70643.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
          Length = 227

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 83/232 (35%), Positives = 132/232 (56%), Gaps = 9/232 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG   +   R++EIG +EL+++  T   F V+L P  R   PEA  +HG+
Sbjct: 1   MREIVLDTETTGFKPEEGHRLVEIGCIELVNHLATGERFHVYLNPE-RDMPPEAFAVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++EFL DKP F+ + ++F  F    ++  + HNA FD+ F+N EL+      +   R ID
Sbjct: 60  SEEFLADKPLFNDVAADFVAFIG--DSPLVIHNAAFDMHFLNWELKIAGYPVMPKDRAID 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR+K P S   L++LCKR+G+  S+R+ HGALLD+ LL++VY++++ GG Q    F
Sbjct: 118 TLLMARQKFPGSPATLDALCKRFGVDNSNRTLHGALLDAQLLAEVYLELL-GGRQTGLSF 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
                    +     P        +     +++EE   H + ++ + KN +W
Sbjct: 177 ---AGGPVSKGGVAGPVRVDRPFREARVFAVSEEEAAAHAEMLKKI-KNPLW 224


>gi|294627921|ref|ZP_06706500.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666553|ref|ZP_06731794.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292597835|gb|EFF41993.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603697|gb|EFF47107.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 244

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 88/239 (36%), Positives = 133/239 (55%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           T EFL DKP F  +  EF  + +   AE I HNA FD+GF++ EL  +       ++ + 
Sbjct: 60  TLEFLADKPLFGEVVDEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F       +          + +LL   +P    +T  E   H+  +  L K    A+WD
Sbjct: 178 FASADAGQQTDAASGMIAFDPALL-LPRPRVA-VTASESQAHEARLAQLRKKAGRALWD 234


>gi|319760362|ref|YP_004124300.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039076|gb|ADV33626.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 251

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 86/252 (34%), Positives = 134/252 (53%), Gaps = 17/252 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           +  N  R ++ D ETTG++      +  +IIEIGAVE+++ S T   F V+L PN R   
Sbjct: 1   MNINTTRYVILDTETTGMNKFGIHYEGHKIIEIGAVEIINRSLTKNKFHVYLNPN-RPVD 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            EA K+HGI+D FLKDKP FS I ++F  F     +  + HNA FDVGF+N EL+  N  
Sbjct: 60  SEAFKIHGISDRFLKDKPVFSDISNKFLSFI--CGSNLVIHNASFDVGFLNFELRETNLK 117

Query: 117 P---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                    IID+L +AR   P  RN L++LC+RY I IS R+ H AL+D+ +L+ V++ 
Sbjct: 118 YKTLETYCSIIDSLKLARNLFPGQRNSLDALCERYFIDISQRNLHNALIDAQILAYVFLA 177

Query: 174 MMVGGSQINFG---FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           M  G +++         +++     + +   N+   +         T EE   H++ ++ 
Sbjct: 178 MTGGQTEMQLTNDIINLDKNTSVLSDMQRSYNVDTQEIKSLNIIYATVEEKTNHNRYLEL 237

Query: 231 LGK---NAIWDR 239
           + K     +W +
Sbjct: 238 IEKQSGKCLWKK 249


>gi|153876055|ref|ZP_02003569.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. PS]
 gi|152067479|gb|EDN66429.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. PS]
          Length = 239

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 96/239 (40%), Positives = 139/239 (58%), Gaps = 15/239 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  K   RIIEIG +E+L+   TN+ +  FL P+ RK+  EAL +HGI
Sbjct: 1   MRQIALDTETTGLSVKDGHRIIEIGCIEILNRRVTNKYYHQFLQPD-RKSDTEALAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122
           T EFLKDKP F  I ++F +F   + AE + HNA FD+ FIN EL+ +++D        +
Sbjct: 60  THEFLKDKPRFREIVNDFMNFI--KGAELLIHNAAFDMSFINRELELLHQDWQPLEHYCK 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I D+L +A+ +HP  +N+L++LCKRYG+  S+R  HGALLD+ +L++VY+ M      + 
Sbjct: 118 ITDSLVLAKERHPGQKNNLDALCKRYGVDNSNRQLHGALLDAEILAEVYLTMTAEQVSL- 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237
              + N   F K    T+  IS  KR        T+ EL  H + +  +    G   +W
Sbjct: 177 LASEGNNIEFLKNN--TIKRIS-SKRASLTLITPTEGELQAHKQRLTAINKACGGKCLW 232


>gi|261856413|ref|YP_003263696.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus
           c2]
 gi|261836882|gb|ACX96649.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus
           c2]
          Length = 237

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 93/233 (39%), Positives = 130/233 (55%), Gaps = 11/233 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG+ +    R++EIGAVE+++   T +TF  +L P  R     A  +HG++
Sbjct: 4   RQIVLDTETTGMPAADGHRLVEIGAVEMIERRVTGKTFHCYLNPE-RLVDEGAFNVHGLS 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPLDPSRI 123
           D FL DKP F+ +  EF  F     AE I HNA+FDVGF++AEL R+    +       +
Sbjct: 63  DAFLADKPKFADVVDEFLAFIA--GAELIIHNAEFDVGFLDAELARLANGGRLADVAGSV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L+IAR+KHP  RN L++LC+RY I  S R+ HGALLDS +L+DVY+ +  G   + F
Sbjct: 121 TDSLAIARKKHPGQRNSLDALCRRYSIDNSARTLHGALLDSEILADVYLALTGGQKTLGF 180

Query: 184 GFKTNEDRFFKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
               +E     E K+    I L   R         +EE   H   + TLGK  
Sbjct: 181 D---SEHGQGDEHKQAASIIRLPADRPPLRVITANEEERAAHAAWLVTLGKEG 230


>gi|15604567|ref|NP_221085.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
           Madrid E]
 gi|6685391|sp|Q9ZCJ9|DPO3E_RICPR RecName: Full=DNA polymerase III subunit epsilon
 gi|3861262|emb|CAA15161.1| DNA POLYMERASE III, EPSILON CHAIN (dnaQ) [Rickettsia prowazekii]
 gi|292572374|gb|ADE30289.1| DNA polymerase III epsilon chain [Rickettsia prowazekii Rp22]
          Length = 229

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 86/232 (37%), Positives = 131/232 (56%), Gaps = 11/232 (4%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            + +R+I+ D ETTGLD +   RI+EIGA+E+++   T + F  ++ P  R    EA K+
Sbjct: 1   MSSLREIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGKHFHFYINPE-RDMPFEAYKI 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI+ EFLKDKP F +I ++F  F    ++  I HNA FD+ F+N EL   +R     L+
Sbjct: 60  HGISGEFLKDKPLFKTIANDFLKFIA--DSTLIIHNAPFDIKFLNHELSLLKRTEIKFLE 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +  IDTL +AR   P +R  L++LCKR+ +  S R  HGAL D+ LL++VY+ +  GG 
Sbjct: 118 LTNTIDTLVMARNMFPGARYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVALT-GGR 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           Q  F      D         V  + + +  + +  + TKEEL +H + I  +
Sbjct: 177 QSTFKMINKPDEI---NNLAVKCVDVQQIKRGIVVKPTKEELQKHKEFIDKI 225


>gi|157964873|ref|YP_001499697.1| DNA polymerase III subunit epsilon [Rickettsia massiliae MTU5]
 gi|157844649|gb|ABV85150.1| DNA polymerase III epsilon chain [Rickettsia massiliae MTU5]
          Length = 229

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 136/236 (57%), Gaps = 11/236 (4%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            + +R+I+ D ETTGLD +   RI+EIGA+E+++   T R F  ++ P  R    EA ++
Sbjct: 1   MSSLREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRI 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI+ EFLKDKP F +I  +F +F +  +++ I HNA FD+ F+N EL   +R     L+
Sbjct: 60  HGISGEFLKDKPLFHTIADDFLEFIS--DSKLIIHNAPFDIKFLNHELSLLKRTEIKLLE 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +  IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY+++M GG 
Sbjct: 118 LANTIDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELM-GGR 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           Q  F      D+           ++       +  + TKEEL +H + +  + K A
Sbjct: 177 QSAFKMV---DKSAGINNLATNQVNNQTEQATIVIKPTKEELQKHKEFLSRILKTA 229


>gi|67458568|ref|YP_246192.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2]
 gi|75536966|sp|Q4UN31|DPO3E_RICFE RecName: Full=DNA polymerase III subunit epsilon
 gi|67004101|gb|AAY61027.1| DNA polymerase III epsilon chain [Rickettsia felis URRWXCal2]
          Length = 229

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 137/236 (58%), Gaps = 11/236 (4%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            + +R+I+ D ETTGLD +   RI+EIGA+E+++   T R F  ++ P  R    +A ++
Sbjct: 1   MSSLREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFDAYRI 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI+ EFLKDKP F +I  +F +F +  +++ I HNA FD+ F+N EL   +R     L+
Sbjct: 60  HGISGEFLKDKPLFHTIADDFLEFIS--DSKLIIHNAPFDIKFLNHELSLLKRAEIKLLE 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            S  IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY+++  GG 
Sbjct: 118 LSNAIDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELT-GGR 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           Q  F      D+  +        ++       +  + TKEEL +H + + ++ K A
Sbjct: 177 QSAFKMV---DKSVETNNLATNQVNNKTEQATIVIKPTKEELQKHKEFLSSILKTA 229


>gi|187929152|ref|YP_001899639.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12J]
 gi|187726042|gb|ACD27207.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12J]
          Length = 242

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/237 (37%), Positives = 127/237 (53%), Gaps = 9/237 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL++   DR+IEIG VE+++   T R    ++ P  R+    A+ +HGI
Sbjct: 1   MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T+EF+ DKP F+ I +E  D+   Q AE I HNA FD+GF++ E QR+            
Sbjct: 60  TNEFVADKPKFAEIVNEIRDYV--QGAEAIIHNAAFDLGFLDMEFQRLGLPAFREHLSGH 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  AR+  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G  Q   
Sbjct: 118 IDTLREARQMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRG--QNTL 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-GKNAIWDR 239
                E       +    ++S L+    L T    E      K I    G   +W R
Sbjct: 176 VIDMLESGEGASAEAVAVDLSALQLPVLLATEAEAEAHAGVLKEIDKASGGKTVWTR 232


>gi|89067418|ref|ZP_01154931.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola granulosus HTCC2516]
 gi|89046987|gb|EAR53041.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola granulosus HTCC2516]
          Length = 230

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 97/237 (40%), Positives = 141/237 (59%), Gaps = 8/237 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGAVEL ++  T RT+  ++ P  R    EA ++HG+
Sbjct: 1   MREIVLDTETTGFDPEDGDRIVEIGAVELDNHMPTGRTYHQYINPQ-RAMPREAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DEFL DKP F+ I   F DF    +A  + HNA FD+ F+NAEL   N   L  S+ +D
Sbjct: 60  GDEFLADKPVFARIGRAFLDFVG--DARLVIHNASFDMKFLNAELGWANLPRLPDSQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+++AR K P S   L++LC+R+GI  S R+ HGALLDS +L++VY++++ GG Q +F  
Sbjct: 118 TVAMARSKFPGSPVSLDALCRRFGIDNSARTYHGALLDSEILAEVYLELI-GGRQPDFAL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
             ++    +  +    +     R +PL  RIT  E   H   I+ LG+ ++W R   
Sbjct: 177 SVSQVGGGEAGQD---DWRPRPRPEPLPPRITAAEAAAHQAFIEKLGEASLWARLAG 230


>gi|51473901|ref|YP_067658.1| DNA polymerase III subunit epsilon [Rickettsia typhi str.
           Wilmington]
 gi|81826284|sp|Q68W16|DPO3E_RICTY RecName: Full=DNA polymerase III subunit epsilon
 gi|51460213|gb|AAU04176.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 229

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 90/232 (38%), Positives = 134/232 (57%), Gaps = 11/232 (4%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            + +R+I+ D ETTGLD +   RIIEIGA+E+++   T + F  ++ P  R    EA K+
Sbjct: 1   MSSLREIILDTETTGLDPQQGHRIIEIGAIEMVNKVLTGKHFHCYINPE-RDMPFEAYKI 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI+ EFLKDKP F +I ++F  F    ++  I HNA FD+ F+N EL   +R     L+
Sbjct: 60  HGISGEFLKDKPLFHTIANDFLKFIA--DSTLIIHNAPFDIKFLNHELSLLKRTEIKFLE 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +  IDTL +AR   P +R  L++LCKR+ +  S R  HGAL D+ LL++VY+ +  GG 
Sbjct: 118 LTNTIDTLVMARSMFPGARYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVALT-GGR 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           Q  F      D+  +    TV  I + K  + +  + TKEEL +H + I  +
Sbjct: 177 QSTFKMI---DKPNEINNLTVKCIEVQKIKRSIVVKPTKEELQKHKEFIDKI 225


>gi|270156747|ref|ZP_06185404.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968]
 gi|289164806|ref|YP_003454944.1| DNA polymerase III, epsilon chain [Legionella longbeachae NSW150]
 gi|269988772|gb|EEZ95026.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968]
 gi|288857979|emb|CBJ11839.1| putative DNA polymerase III, epsilon chain [Legionella longbeachae
           NSW150]
          Length = 233

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 94/232 (40%), Positives = 132/232 (56%), Gaps = 10/232 (4%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR++V D ETTG+      R+IEIG VEL+D   T   F V+L P  R     A ++HGI
Sbjct: 1   MRQVVLDTETTGIGHEHGHRVIEIGCVELIDRKLTGNHFHVYLNPQ-RLVDEGAFRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLDPSRI 123
           ++EFL+DKP F+ +  +FW F +   AE I HNA FDVGF+N+ELQ    NK      +I
Sbjct: 60  SNEFLQDKPLFADVAEKFWRFIS--GAELIIHNAPFDVGFLNSELQLINWNKKLEVYCKI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL +AR K+P  RN L++LCKRYGI   +R  HGALLD+ +L+ VY+ M  G + +  
Sbjct: 118 TDTLVLAREKYPGQRNSLDALCKRYGIDHFNRELHGALLDAEILAFVYLAMTGGQTSLFA 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
             +        + ++TV     L  +  +    + EEL+ H   I  L K +
Sbjct: 178 EVEETSLHVNSKSQETV----ALHLENSVVLPASAEELESHQLFIDFLHKKS 225


>gi|254522635|ref|ZP_05134690.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
 gi|219720226|gb|EED38751.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
          Length = 243

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 91/239 (38%), Positives = 130/239 (54%), Gaps = 13/239 (5%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+  K +RI+EIG VEL     T   +  ++ P+  +    A ++ G+
Sbjct: 1   MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDC-EFEQGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           T EFL DKP F+ I  EF  F +   AE I HNA FD+GF++ EL  +        D   
Sbjct: 60  TLEFLDDKPGFAQIADEFLAFID--GAELIIHNAAFDLGFLDNELSLLGPQYGKITDRCT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDTL++AR + P  RN L++LCKR G+  SHR+ HG LLD+ +L DVYI +  G  +I 
Sbjct: 118 VIDTLAMARERFPGQRNSLDALCKRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           FG    +        +      LL R + +    T  EL+ H   ++ L K    A+WD
Sbjct: 178 FGLGDEDGGGAGAALQAFDASKLLPRPRVM---ATPSELEAHAARLERLRKKAGHALWD 233


>gi|253996734|ref|YP_003048798.1| DNA polymerase III subunit epsilon [Methylotenera mobilis JLW8]
 gi|253983413|gb|ACT48271.1| DNA polymerase III, epsilon subunit [Methylotenera mobilis JLW8]
          Length = 227

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 88/237 (37%), Positives = 129/237 (54%), Gaps = 16/237 (6%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  ++  R+IEI AVE+++   T   F  +L P+ R   P A ++HGI
Sbjct: 1   MRQIFLDTETTGLYHAQGHRVIEIAAVEVVNRRLTKHHFHYYLNPD-RDIDPGAQEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           + EFL+DKP F+ I +E   F    +AE I HNA FDVGF+N EL  I +  ++   +++
Sbjct: 60  SLEFLQDKPRFADIANELITFIA--DAELIMHNAPFDVGFLNCELGLIGQKKVEEISAKV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL IA+   P  RN+L++LCK +GI  S R+ HGALLD+ LL+DVY+ M  G   +  
Sbjct: 118 TDTLKIAKEMRPGQRNNLDALCKYFGIDNSKRTLHGALLDAELLADVYMAMTRGQDSLMI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWD 238
                     +        +S +             EL +H+  +  L K  N +W+
Sbjct: 178 ALDQPSHETVE--------VSAVSHAPLQVKLANSTELADHEAYLAGLAKSGNCVWN 226


>gi|269958788|ref|YP_003328576.1| DNA polymerase III, epsilon subunit [Anaplasma centrale str.
           Israel]
 gi|269848618|gb|ACZ49262.1| DNA polymerase III, epsilon subunit [Anaplasma centrale str.
           Israel]
          Length = 232

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 90/241 (37%), Positives = 137/241 (56%), Gaps = 11/241 (4%)

Query: 6   KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R+IV D ETTGLD+   DRIIEIG VEL+D+  T + F  ++ P  R     A K+HG
Sbjct: 2   RTREIVLDTETTGLDAASGDRIIEIGCVELVDFVMTGQVFHKYINPE-RDIPIAATKIHG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT + +K+ P F+ +  +F +F   Q++  + HNA FD+ FI  E++RI K  L  + ++
Sbjct: 61  ITTDMVKNMPKFAEMADQFLNFV--QDSVLVIHNAGFDLKFIETEMERIGKTKL-YNPVV 117

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +ARRK P     L++LCKR+ I+ S R  HGAL D+ LL+ VY+++  GG Q + G
Sbjct: 118 DTLEVARRKFPGMPASLDALCKRFDISTSSRRFHGALKDATLLARVYVEL-CGGIQRSLG 176

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244
           F   E     +E      +    R       I+  E   H ++I  + K+ IW+ Y+ ++
Sbjct: 177 FVDGELNQSTKENNASKPVLQAPRT----FTISDLEHKLHMESISKM-KDPIWNMYLKTS 231

Query: 245 Q 245
            
Sbjct: 232 D 232


>gi|149927491|ref|ZP_01915745.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
 gi|149823764|gb|EDM82990.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
          Length = 240

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 86/246 (34%), Positives = 126/246 (51%), Gaps = 17/246 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +V D ETTGL+ +   RIIEIG +E+     T+  F  ++ P  R+    A ++HGI
Sbjct: 1   MRYVVLDTETTGLEVRQGHRIIEIGCIEVNGRQVTDHHFHQYINPE-REVDEGAFQVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           +DE L DKP F  I  +F DF   Q +  I HNA FD+GF++ EL+R+    +      +
Sbjct: 60  SDEMLADKPKFKQIAKDFLDFV--QGSTLIIHNASFDIGFLDGELERLGLGKMADYVDGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ID+L +AR   P  RN+L++LC R G+  +HR  HGALLDS +L++VY+ M  G   +  
Sbjct: 118 IDSLGMAREMFPGKRNNLDALCDRLGVNNAHRQLHGALLDSQILAEVYLAMTRGQDSLVI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDR 239
                 D    E  K       L          T+EEL  H   +  + K A    +W +
Sbjct: 178 DLNAQHDDDGVERIK-------LSALNLPEPEPTEEELVLHQAYLADIEKAAKGPSVWSK 230

Query: 240 YISSNQ 245
              + +
Sbjct: 231 ISQATE 236


>gi|121594487|ref|YP_986383.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42]
 gi|120606567|gb|ABM42307.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42]
          Length = 237

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 92/238 (38%), Positives = 131/238 (55%), Gaps = 15/238 (6%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++  DRIIE+G VEL++   T     ++L P  R +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSAEGGDRIIELGCVELVNRKLTGNNLHLYLNPE-RDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRII 124
           +EFL+DKP F+    +   +   Q AE I HNA FDVGF++ EL+ +   PL      +I
Sbjct: 62  NEFLRDKPKFAERVQDILQYL--QGAELIIHNASFDVGFLDKELELVGLAPLSAHVGGVI 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++A+   P  RN L+SLC R G+  S R+ HGALLD+ LL+DVYI M  G   +   
Sbjct: 120 DTLAMAKEMFPGKRNSLDSLCDRLGVDNSSRTLHGALLDAELLADVYINMTRGQDALLIM 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWD 238
                D        T      L R        + +EL EH++ +  + K++    IW 
Sbjct: 180 -----DEATAGAGGTTVAAVDLSRIALTVLTASAQELAEHEEVLVQIDKSSSGKTIWR 232


>gi|222110838|ref|YP_002553102.1| DNA polymerase iii subunit epsilon [Acidovorax ebreus TPSY]
 gi|221730282|gb|ACM33102.1| DNA polymerase III, epsilon subunit [Acidovorax ebreus TPSY]
          Length = 237

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 92/238 (38%), Positives = 131/238 (55%), Gaps = 15/238 (6%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++  DRIIE+G VEL++   T     ++L P  R +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSAEGGDRIIELGCVELVNRKLTGNNLHLYLNPE-RDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRII 124
           +EFL+DKP F+    +   +   Q AE I HNA FDVGF++ EL+ +   PL      +I
Sbjct: 62  NEFLRDKPKFAERVQDILQYL--QGAELIIHNASFDVGFLDKELELVGLAPLSAHVGGVI 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++A+   P  RN L+SLC R G+  S R+ HGALLD+ LL+DVYI M  G   +   
Sbjct: 120 DTLAMAKEMFPGKRNSLDSLCDRLGVDNSSRTLHGALLDAELLADVYINMTRGQDALLIM 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWD 238
                D        T      L R        + +EL EH++ +  + K++    IW 
Sbjct: 180 -----DEATAGAGGTTVAAVDLSRIALTVLTASAQELAEHEEVLVQIDKSSGGKTIWR 232


>gi|21241847|ref|NP_641429.1| DNA polymerase III subunit epsilon [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107228|gb|AAM35965.1| DNA polymerase III epsilon chain [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 244

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 88/239 (36%), Positives = 133/239 (55%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           T EFL DKP F  +  EF  + +   AE I HNA FD+GF++ EL  +       ++ + 
Sbjct: 60  TLEFLADKPLFGEVVDEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F       +          + +LL   +P    +T  E   H+  +  L K    A+WD
Sbjct: 178 FASADAGQQADAASGMIAFDPALL-LPRPRVA-VTASESQAHEARLAQLRKKAGRALWD 234


>gi|27904727|ref|NP_777853.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
 gi|31340041|sp|Q89AN3|DPO3E_BUCBP RecName: Full=DNA polymerase III subunit epsilon
 gi|27904124|gb|AAO26958.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
          Length = 245

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 96/251 (38%), Positives = 137/251 (54%), Gaps = 20/251 (7%)

Query: 3   RKNKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
            K   RKIV DIETTG++      KN +IIEIGAVE+++   T   F  ++ PN R    
Sbjct: 1   MKKYDRKIVLDIETTGMNPAGCFYKNHKIIEIGAVEMINNVFTGNNFHSYIQPN-RLIDK 59

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--- 114
           ++ K+HGITD FL DKP F  I  +F ++    N++ I HNAKFDVGFIN EL  IN   
Sbjct: 60  QSFKIHGITDNFLLDKPKFHEISVKFLEYI--TNSDLIIHNAKFDVGFINYELNMINSDK 117

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +   D   ++DTL +AR+  P  +N L++LC RY I +SHR  H AL+D+ LL+ VY  M
Sbjct: 118 RKISDYCNVVDTLPLARQLFPGKKNSLDALCNRYKINVSHRDFHSALIDAKLLAKVYTFM 177

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG-- 232
                 I+   K +     ++  K    +      +      TK+EL +H K ++ +   
Sbjct: 178 TSFQQSISIFDKNSNLNSIQKNAKLDSRVPF----RSTLLLATKDELQQHMKYLKYVKQE 233

Query: 233 -KNAIW--DRY 240
             N +W  D+Y
Sbjct: 234 TGNCVWLEDKY 244


>gi|58580665|ref|YP_199681.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84622598|ref|YP_449970.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|166710938|ref|ZP_02242145.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|58425259|gb|AAW74296.1| DNA polymerase III epsilon chain [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366538|dbj|BAE67696.1| DNA polymerase III epsilon chai [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 244

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 88/239 (36%), Positives = 133/239 (55%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           T EFL DKP F  +  EF  + +   AE I HNA FD+GF++ EL  +       ++ + 
Sbjct: 60  TLEFLADKPLFGEVVEEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F       +          + +LL   +P    +T  E   H+  +  L K    A+WD
Sbjct: 178 FASADAGQQTDAASGMIAFDPALL-LPRPRVA-VTASESQAHEARLVQLRKKAGRALWD 234


>gi|167949084|ref|ZP_02536158.1| DNA polymerase III, epsilon subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 203

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 83/202 (41%), Positives = 121/202 (59%), Gaps = 7/202 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ +   RIIEIG VE++D   +   F  +L P+ R+    A+++HGI
Sbjct: 1   MRQIVLDTETTGLEPQQGHRIIEIGCVEMIDRRLSGNNFHQYLQPD-REIDAGAIEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SR 122
           T+EFL DKP F+ + ++F D+   + AE I HNA FDVGF+N ELQ +  D         
Sbjct: 60  TNEFLADKPRFADLAADFLDYI--RGAELIIHNAPFDVGFLNHELQLMGADSPPIGELCA 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDTL +A++ HP  RN L++LCKRY +  + R  HGALLD+ +L+DVY+ M  G + ++
Sbjct: 118 VIDTLVMAKKMHPGQRNSLDALCKRYDVDNTQRELHGALLDAEILADVYLAMTGGQATLS 177

Query: 183 FGFKTNEDRFFKEEKKTVPNIS 204
                 E     +    +  I 
Sbjct: 178 LEMTRAEGESTADVDGGIRRIR 199


>gi|15893035|ref|NP_360749.1| DNA polymerase III subunit epsilon [Rickettsia conorii str. Malish
           7]
 gi|20137858|sp|Q92GL1|DPO3E_RICCN RecName: Full=DNA polymerase III subunit epsilon
 gi|15620236|gb|AAL03650.1| DNA polymerase III epsilon chain [Rickettsia conorii str. Malish 7]
          Length = 230

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 137/236 (58%), Gaps = 11/236 (4%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            + +R+I+ D ETTGLD +   RI+EIGA+E+++   T R F  ++ P  R    EA ++
Sbjct: 1   MSSLREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRI 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI+ EFLKDKP F +I  +F +F +  +++ I HNA FD+ F+N EL   +R +   L+
Sbjct: 60  HGISGEFLKDKPLFHTIADDFLEFIS--DSKLIIHNAPFDIKFLNHELSLLKRTDIKLLE 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +  IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY+++M GG 
Sbjct: 118 LANTIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELM-GGR 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           Q  F      D+           ++       +  + TKEEL +H + +  + K A
Sbjct: 177 QSAFKMV---DKSAVINNLATNQVNNKTEQTTIVIKPTKEELQKHKEFLSRILKTA 229


>gi|157828957|ref|YP_001495199.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933682|ref|YP_001650471.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           Iowa]
 gi|157801438|gb|ABV76691.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165908769|gb|ABY73065.1| DNA polymerase III, epsilon chain [Rickettsia rickettsii str. Iowa]
          Length = 229

 Score =  215 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 137/236 (58%), Gaps = 11/236 (4%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            + +R+I+ D ETTGLD +   RI+EIGA+E+++   T R F  ++ P  R    EA ++
Sbjct: 1   MSSLREIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRI 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI+ EFLKDKP F +I  +F +F +  +++ I HNA FD+ F+N EL   +R +   L+
Sbjct: 60  HGISGEFLKDKPLFHTIADDFLEFIS--DSKLIIHNAPFDIKFLNHELSLLKRTDIKLLE 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +  IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY+++M GG 
Sbjct: 118 LANTIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELM-GGR 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           Q  F      D+           ++       +  + TKEEL +H + +  + K A
Sbjct: 177 QSAFKMV---DKSAVINNLATNQVNNKTEQTTIVIKPTKEELQKHKEFLSRILKTA 229


>gi|145641463|ref|ZP_01797041.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
 gi|145273754|gb|EDK13622.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.4-21]
          Length = 205

 Score =  215 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 86/188 (45%), Positives = 120/188 (63%), Gaps = 13/188 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI  N  R+IV D ETTG+       +   IIEIGAVEL++   T   F +++ P+ R  
Sbjct: 1   MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+A+K+HGITDE L DKP F  +  +F D+ N   AE + HNA FDVGF++ E +++N 
Sbjct: 58  DPDAIKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    D   + DTL +AR+ +P  RN+L++LC R GI  S R+ HGALLD+ +L+DVY+ 
Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL- 174

Query: 174 MMVGGSQI 181
           MM GG QI
Sbjct: 175 MMTGGKQI 182


>gi|297538708|ref|YP_003674477.1| DNA polymerase III subunit epsilon [Methylotenera sp. 301]
 gi|297258055|gb|ADI29900.1| DNA polymerase III, epsilon subunit [Methylotenera sp. 301]
          Length = 235

 Score =  215 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 87/239 (36%), Positives = 134/239 (56%), Gaps = 16/239 (6%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  ++  R+IE+ AVE+++   T + F  +L P+ R+    A ++HGI
Sbjct: 1   MRQIFLDTETTGLYHAQGHRVIEVAAVEVINRRLTKQHFHYYLNPD-REIDQGAQEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           + EFL+DKP F+ I +E   F    ++E I HNA FDVGF+N E   I + P++   ++I
Sbjct: 60  SLEFLQDKPHFADIANELIAFIA--DSELIMHNAPFDVGFLNREFGLIEQKPVEAITAKI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL IA+   P  RN L++LCK YGI  S R+ HGALLD+ LL+DVY+ M  G   +  
Sbjct: 118 TDTLKIAKEMRPGQRNSLDALCKHYGIDNSKRTLHGALLDAELLADVYMAMTRGQDSLMM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWDRY 240
                + +     ++    +        L     + E+  HD+ I +L K  + +W ++
Sbjct: 178 ELDKPQQKNSDAIQEIKQPV--------LVKLANQAEISAHDEYIASLAKSSDCLWAKF 228


>gi|82702745|ref|YP_412311.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
 gi|82410810|gb|ABB74919.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 234

 Score =  215 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 86/245 (35%), Positives = 124/245 (50%), Gaps = 19/245 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL+ K   RIIEIGAVE++    T R F  +L P  R+    AL++HGI
Sbjct: 1   MRQIFIDTETTGLEPKLGHRIIEIGAVEMMSRRLTGRRFHHYLNPE-REIEEGALQVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123
           T EFL DK  F+ +  E  +F +   AE I HNA FDV F++ EL   N   L       
Sbjct: 60  TSEFLLDKRKFADVVHELLEFID--GAELIMHNAAFDVAFLDHELGLANLPALCECCHSV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL +A+   P  RN L++LC+RY +  S R+ HGALLD+ LL++VY+ M  G   +  
Sbjct: 118 TDTLKMAKELFPGKRNSLDALCERYEVDNSRRALHGALLDAELLAEVYLAMTRGQESLLM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239
             +             +         + +    + EEL+ H + ++ + K      +W R
Sbjct: 178 ELEAPSPLDLDISLHDL---------QLVVLPASAEELEAHARQLEMIEKESKGKCLWMR 228

Query: 240 YISSN 244
              + 
Sbjct: 229 LDPAE 233


>gi|319762901|ref|YP_004126838.1| DNA polymerase iii, epsilon subunit [Alicycliphilus denitrificans
           BC]
 gi|330824980|ref|YP_004388283.1| DNA polymerase III subunit epsilon [Alicycliphilus denitrificans
           K601]
 gi|317117462|gb|ADU99950.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans
           BC]
 gi|329310352|gb|AEB84767.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans
           K601]
          Length = 242

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 92/245 (37%), Positives = 137/245 (55%), Gaps = 15/245 (6%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++N DRIIE+G VELL    T     ++L P  R +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSAENGDRIIELGCVELLSRKLTGNNLHLYLNPE-RDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRII 124
           +EFL+DKP F+ +  +  ++   + AE I HNA FDVGF++ EL+     PL      +I
Sbjct: 62  NEFLRDKPKFAEVVHDILEYL--RGAELIIHNASFDVGFLDKELELAGLPPLAAHVDGVI 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++A+   P  RN L++LC R  +  S R+ HGALLD+ LL+DVYI M  G   +   
Sbjct: 120 DTLAMAKEMFPGKRNSLDALCDRLEVDNSGRTLHGALLDAELLADVYINMTRGQDALLIM 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDRY 240
            +T       E    V  + L +   P+    + +EL EH+  +  + K++    IW   
Sbjct: 180 DETAN----GEGGVKVAAVDLSRLVLPVLL-ASDQELAEHEDLLAQIDKSSAGKTIWRTR 234

Query: 241 ISSNQ 245
             + +
Sbjct: 235 AEAQK 239


>gi|34581277|ref|ZP_00142757.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246]
 gi|229587086|ref|YP_002845587.1| DNA polymerase III subunit epsilon [Rickettsia africae ESF-5]
 gi|238650388|ref|YP_002916240.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str.
           Rustic]
 gi|28262662|gb|EAA26166.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246]
 gi|228022136|gb|ACP53844.1| DNA polymerase III epsilon chain [Rickettsia africae ESF-5]
 gi|238624486|gb|ACR47192.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str.
           Rustic]
          Length = 229

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 137/236 (58%), Gaps = 11/236 (4%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            + +R+I+ D ETTGLD +   RI+EIGA+E+++   T R F  ++ P  R    EA ++
Sbjct: 1   MSSLREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRI 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI+ EFLKDKP F +I  +F +F +  +++ I HNA FD+ F+N EL   +R +   L+
Sbjct: 60  HGISGEFLKDKPLFHTIADDFLEFIS--DSKLIIHNAPFDIKFLNHELSLLKRTDIKLLE 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +  IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY+++M GG 
Sbjct: 118 LANTIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELM-GGR 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           Q  F      D+           ++       +  + TKEEL +H + +  + K A
Sbjct: 177 QSAFKMV---DKSAVINNLATNQVNNKTEQTTIVIKPTKEELQKHKEFLSRILKTA 229


>gi|188578361|ref|YP_001915290.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188522813|gb|ACD60758.1| DNA polymerase III, epsilon subunit [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 244

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 88/239 (36%), Positives = 133/239 (55%), Gaps = 12/239 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGL+ +  +R++EIGAVELL+   +   F  +L P+     P A ++ G+
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122
           T EFL DKP F  +  EF  + +   AE I HNA FD+GF++ EL  +       ++ + 
Sbjct: 60  TLEFLADKPLFGDVVEEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTL +AR ++P  RN L++LCKR G+  SHR  HGALLD+ +L+DVYI +  G  +I 
Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238
           F       +          + +LL   +P    +T  E   H+  +  L K    A+WD
Sbjct: 178 FASADAGQQTDAASGMIAFDPALL-LPRPRVA-VTASESQAHEARLVQLRKKAGRALWD 234


>gi|91205177|ref|YP_537532.1| DNA polymerase III subunit epsilon [Rickettsia bellii RML369-C]
 gi|157827486|ref|YP_001496550.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389]
 gi|122425898|sp|Q1RJM1|DPO3E_RICBR RecName: Full=DNA polymerase III subunit epsilon
 gi|91068721|gb|ABE04443.1| DNA polymerase III epsilon chain [Rickettsia bellii RML369-C]
 gi|157802790|gb|ABV79513.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389]
          Length = 229

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            + +R+I+ D ETTGLD K   RI+EIGA+E+++   T R F  +L P  R    EA ++
Sbjct: 1   MSSLREIILDTETTGLDPKGGHRIVEIGAIEMVNKVLTGRHFHFYLNPE-RDMPFEAYRI 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI+ EFLKDKP F +I  +F +F    +++ + HNA FDV F+N EL   +R     L+
Sbjct: 60  HGISGEFLKDKPLFHTIADDFLEFIA--DSKLVIHNAPFDVKFLNHELSLLKRAEIKLLE 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               IDTL +AR   P S+  L++LCKR+ +  S R  HGAL D+ LL++VY+++  GG 
Sbjct: 118 LEHAIDTLVMARSMFPGSKYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELT-GGR 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           Q  F      D+  K    +   +           + TKEEL +H + +  + K A
Sbjct: 177 QSAFKM---LDKAAKINNLSYNRLDSQAHRNIPVIKPTKEELQKHKEFLSRVLKQA 229


>gi|241763763|ref|ZP_04761810.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN]
 gi|241366982|gb|EER61378.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN]
          Length = 237

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 89/238 (37%), Positives = 131/238 (55%), Gaps = 15/238 (6%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++  DRIIEIG VEL+    T      +L P  R +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSAEGGDRIIEIGCVELVSRKLTGNNKHFYLNPE-RDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124
           +EFL+DKP F+++  E  ++   Q AE I HNA FDVGF+N EL+ + +  L      + 
Sbjct: 62  NEFLRDKPKFAAVADELLEYL--QGAEVIIHNAAFDVGFLNKELELLGRPALHTFVDSVT 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++A+  +P  RN L++LC R G+  S R+ HGALLD+ LL+DVYI +  G   +   
Sbjct: 120 DTLAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLI- 178

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
               +D            I L     P+     ++E+  H++ +  +    G   IW 
Sbjct: 179 ---IDDAQDSAGGGHFVQIDLRSFTLPVLP-ANEQEIAAHEEVLVQIDKASGGKTIWR 232


>gi|299066469|emb|CBJ37657.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum CMR15]
          Length = 242

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 79/193 (40%), Positives = 113/193 (58%), Gaps = 6/193 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR+IEIG VEL++   T R    +  P  R+    A+ +HGI
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYFNPE-RQIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T+EF+ DKP F+ +  E  D+   Q AE I HNA FD+GF++ E +R+            
Sbjct: 60  TNEFVADKPKFAEVVDEIRDYV--QGAEAIIHNAAFDLGFLDMEFKRLGLPSFREHLDGH 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL  ARR  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G + +  
Sbjct: 118 IDTLLDARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVI 177

Query: 184 GFKTNEDRFFKEE 196
               + +    E 
Sbjct: 178 DMLESGETAAAEA 190


>gi|171057726|ref|YP_001790075.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170775171|gb|ACB33310.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
          Length = 241

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 92/247 (37%), Positives = 144/247 (58%), Gaps = 15/247 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  +  DR++E+G VE+++   T R    +  P  R N  EA+++HG+
Sbjct: 1   MRQIFLDTETTGLSHESGDRVVELGCVEMVNRRLTGRNLHHYFNPQ-RANHEEAVRVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123
           TD FL DKP FS++  EF DF   ++AE IAHNA FDVGF++AEL+RI   PL     ++
Sbjct: 60  TDAFLADKPLFSAVAQEFVDFV--RDAEIIAHNANFDVGFLDAELKRIGHPPLKQLVDKV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L +AR + P   N L++LC+R  +  + R+ HGALLD+ LL++VYI+M  G + +  
Sbjct: 118 TDSLVMAREQFPGKANSLDALCRRLEVDNTSRTVHGALLDAGLLAEVYIRMTRGQNSL-- 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK-EELDEHDKTIQTLGKNA----IWD 238
               ++     E++   P I++      L   + + EE+  H+  +  L K++    +W 
Sbjct: 176 --VIDDSPVQSEQQVEQPLIAVDLTAFVLPVLVAEDEEIAAHEAVLSGLDKSSGGKTLWR 233

Query: 239 RYISSNQ 245
              +S Q
Sbjct: 234 SIGASVQ 240


>gi|74317680|ref|YP_315420.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC
           25259]
 gi|74057175|gb|AAZ97615.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
           ATCC 25259]
          Length = 232

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 80/198 (40%), Positives = 116/198 (58%), Gaps = 6/198 (3%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGLD  +  RIIE+ AVE+++   T      ++ P+ R     A+++HGI
Sbjct: 1   MRQIILDTETTGLDPAQGHRIIEVAAVEMVNRRLTGNHLHRYVNPD-RDIDAGAMQVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--I 123
           T EFL+DKP F  I  EF DF +   AE I HNA FDVGF+N EL+ +    L      +
Sbjct: 60  TPEFLQDKPRFGDIAREFVDFID--GAELIIHNAPFDVGFLNMELRLLGMPLLATCCGGV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL++A+  HP  RN+L++LCKRY +  + R+ HGALLD  LL+ VY+ +  G   ++ 
Sbjct: 118 TDTLAMAKALHPGQRNNLDALCKRYAVDNTARTLHGALLDCELLAAVYLALTRGQESLSI 177

Query: 184 GFKTNEDRFFKEEKKTVP 201
           G +       +   +  P
Sbjct: 178 GLEIPRSESGRAADRPRP 195


>gi|302878569|ref|YP_003847133.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
 gi|302581358|gb|ADL55369.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
          Length = 233

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 89/246 (36%), Positives = 131/246 (53%), Gaps = 23/246 (9%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MRKIV D ETTGLD K   RIIEI A+ L     + R F  +L P  R+   +A ++HG 
Sbjct: 1   MRKIVLDTETTGLDPKKGHRIIEIAAIALEGRKVSKRHFHHYLDPE-REVDEDAARVHGF 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + LK +  F+ I + F +F +   AE +AHNA FD+ FIN EL+ +   PL+ + ++D
Sbjct: 60  TWDMLKGRAKFADIATSFLEFVD--GAELMAHNAPFDMSFINNELRLLGLPPLE-NPVVD 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR  HP  +N L++LC RY I  +HR+ HGALLD+ LL++VY  M  G        
Sbjct: 117 TLKMAREMHPGKKNGLDALCSRYEIDNTHRTLHGALLDTELLAEVYFAMTRGQ------- 169

Query: 186 KTNEDRFFKEEKKTVPNISLL----KRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237
              E    ++E      I++L     R        + +EL  H + +  + K      +W
Sbjct: 170 ---ESLLGEDEPPAAREIAVLSTDASRPTVRVLLPSPDELAVHAQQLLDIDKASKGACLW 226

Query: 238 DRYISS 243
            +  S+
Sbjct: 227 TKLESA 232


>gi|325267110|ref|ZP_08133779.1| DNA-directed DNA polymerase III epsilon subunit [Kingella
           denitrificans ATCC 33394]
 gi|324981463|gb|EGC17106.1| DNA-directed DNA polymerase III epsilon subunit [Kingella
           denitrificans ATCC 33394]
          Length = 245

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 9/234 (3%)

Query: 7   MRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            R+I+ D ETTG +       DR+IE   +E+++   T     +++ P  R    EA  +
Sbjct: 3   QRQIILDTETTGFEHSRADNPDRMIEFAGLEMVNRQFTQNDLHLYIHPE-RDIPAEATAV 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-S 121
           HGIT + L DKP F+ +  + +DF   + AE I HNAKFDVGF+NAE  R+    +D   
Sbjct: 62  HGITLDDLADKPVFADVAQQIFDFL--KGAELIIHNAKFDVGFLNAEFARVGLPNIDSVC 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++DTL +AR+++P  +N L++LC R G+  S R  HGAL+D  LL  VY+ M  G   +
Sbjct: 120 TVVDTLEMARKRYPGQKNSLDALCTRLGVDRSRRVLHGALIDCELLGGVYLAMTRGQFSL 179

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
           +  F  +         K     + L   K      ++EE   H+  +  L K A
Sbjct: 180 DDAFAADNAVSAGNAAKGA-LAAPLSAGKLKVQAASEEECAAHENYLDGLDKAA 232


>gi|239947177|ref|ZP_04698930.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921453|gb|EER21477.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 240

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 86/232 (37%), Positives = 133/232 (57%), Gaps = 11/232 (4%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            + +R+I+ D ETTGLD +   RI+EIGA+E+++   T R F  ++ P  R    EA ++
Sbjct: 12  MSSLREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRM 70

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HGI+ EFLKDKP F +I  +F +F    +++ I HNA FD+ F+N EL   +R     L+
Sbjct: 71  HGISGEFLKDKPLFHTIADDFLEFIA--DSKLIIHNAPFDIKFLNHELSLLKRAEIKLLE 128

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +  IDTL +AR   P S+ +L++LCKR+ +  S R  HGAL D+ LL++VY+++M GG 
Sbjct: 129 LANTIDTLVMARSMFPGSKYNLDALCKRFKVDNSSRQLHGALKDAALLAEVYVELM-GGR 187

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           Q  F      D+           ++       +  + TKEEL +H + I  +
Sbjct: 188 QSAFKMV---DKSAGINNLVTNQVNNKTEQATIVIKPTKEELQKHKEFINKI 236


>gi|89900967|ref|YP_523438.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
 gi|89345704|gb|ABD69907.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
          Length = 233

 Score =  212 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 87/240 (36%), Positives = 123/240 (51%), Gaps = 16/240 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL +   DRIIEIG VEL     T      +L P GR++  +AL++HGI
Sbjct: 1   MRQIFLDTETTGLSADTGDRIIEIGCVELFKRKLTGNNKHFYLNP-GRESHEDALRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T  FLKDKP F ++  E   +   ++AE I HNA FD+GF+N EL  + +         +
Sbjct: 60  TSAFLKDKPKFEAVADELLAYV--KDAEIIIHNAPFDLGFLNKELALLGRPRFKEFVGSV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL +A+   P  RN LN+LC R G+  S R+ HGALLD+ LL+DVYI +  G   +  
Sbjct: 118 TDTLVMAKEMFPGKRNSLNALCDRLGVDNSGRALHGALLDAELLADVYINLTRGQDALLM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239
                E    +  +  + +I L             +E   HD  +  + K      +W +
Sbjct: 178 EAGATESESLQVVQIDLGSIVL------PVLAANDQESAAHDDVLNQIDKASGNKTVWRK 231


>gi|296115251|ref|ZP_06833892.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295978352|gb|EFG85089.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 226

 Score =  212 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 88/233 (37%), Positives = 125/233 (53%), Gaps = 12/233 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I+FD ETTGLD    DR+IEI A+EL+    + R+F+V + P  R    EA ++HG T
Sbjct: 3   RSILFDTETTGLDPLNGDRVIEIAALELIGDLPSGRSFRVLIDPE-RDVPEEASRVHGFT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+ +P F+ I  EF  F  +   E IAHNA FD GF+NAE +R     L  +R++DT
Sbjct: 62  RADLEGQPKFAQIADEFLAFIGDD--ELIAHNAAFDFGFLNAEFRRAGLPELAMTRMVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L IAR + P   N L++LC+R+ I +S R+ H ALLD  LL++VYI++  GG Q   G  
Sbjct: 120 LQIARARFPGMPNSLDALCRRFSIDLSARTTHNALLDCKLLAEVYIEL-SGGRQRGLGLS 178

Query: 187 TNE-DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
             E          T P    + R  P        E+  H + +  +  + +W 
Sbjct: 179 VEEGGTPSAAYDYTRPAGHAVVRVVP-----DAAEIAAHARFVDEIS-DPLWR 225


>gi|300691174|ref|YP_003752169.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07]
 gi|299078234|emb|CBJ50881.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07]
          Length = 242

 Score =  212 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 80/178 (44%), Positives = 112/178 (62%), Gaps = 6/178 (3%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL++   DR+IEIG VEL++   T R    ++ P  R+    A+ +HGI
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           T+EF+ DKP F+ I +E  D+   Q AE I HNA FD+GF++ E QR+            
Sbjct: 60  TNEFVADKPKFAEIVAEIRDYV--QGAEAIIHNAAFDLGFLDMEFQRLKLPSFREHLAGH 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           IDTL  ARR  P  RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M  G + +
Sbjct: 118 IDTLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTL 175


>gi|157803402|ref|YP_001491951.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str.
           McKiel]
 gi|157784665|gb|ABV73166.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str.
           McKiel]
          Length = 229

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 84/232 (36%), Positives = 133/232 (57%), Gaps = 11/232 (4%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            + +R+I+ D ETTGLD +   RI+EIGA+E+++   T R F  ++ P  R    EA ++
Sbjct: 1   MSSLREIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRI 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119
           HG++DEFLKDKP F +I  +F +F +  +++ I HNA FD+ F+N EL   +R     L+
Sbjct: 60  HGLSDEFLKDKPLFHTIADDFLEFIS--DSKLIIHNAPFDIKFLNHELSLLKRTEIKLLE 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +  IDTL +AR   P ++ +L++LCKR+ +  S R  H AL D+ LL++VY+ +  GG 
Sbjct: 118 LANTIDTLVMARSMFPGAKYNLDALCKRFKVDNSGRQVHSALKDAALLAEVYVALT-GGR 176

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           Q  F      DR  +        ++   +   +  + TKEEL +H   I  +
Sbjct: 177 QSTFKIV---DRSIRINNLATHQVNNKTQQTTIVIKPTKEELQKHKDFINKI 225


>gi|121609336|ref|YP_997143.1| DNA polymerase III subunit epsilon [Verminephrobacter eiseniae
           EF01-2]
 gi|121553976|gb|ABM58125.1| DNA polymerase III, epsilon subunit [Verminephrobacter eiseniae
           EF01-2]
          Length = 237

 Score =  211 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 91/238 (38%), Positives = 130/238 (54%), Gaps = 15/238 (6%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL +   DRIIE+G VELL+   T     ++  P GR +  +ALK+HGI+
Sbjct: 3   RQIVLDTETTGLSADSGDRIIELGCVELLNRKLTGNNLHLYFNP-GRDSHEDALKVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124
           +EFLKDKP F+ +  +   +   Q AE I HNA FDVGF+N EL+      L     R+ 
Sbjct: 62  NEFLKDKPRFAELVDDILQYL--QGAELIIHNAAFDVGFLNKELELAGHPALAHCVERVT 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++A+  +P  RN L++LC R G+  S R+ HGALLD+ LL+DVYI +  G   +   
Sbjct: 120 DTLAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYIHLTRGQKAL--- 176

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
              +E +    +   +P I L     P+      +E   H + +  +    G   IW 
Sbjct: 177 LIADEAQPSATDLPLLP-IDLHALVLPVL-HANAQEQQAHAEVLAQIDKASGGKTIWR 232


>gi|219681615|ref|YP_002468001.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682172|ref|YP_002468556.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471303|ref|ZP_05635302.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621905|gb|ACL30061.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624458|gb|ACL30613.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311087677|gb|ADP67756.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 237

 Score =  211 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 96/244 (39%), Positives = 135/244 (55%), Gaps = 16/244 (6%)

Query: 4   KNKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            N+ R I+ D ETTG++       N RIIEIGAVE++D   T   F V++ P GR     
Sbjct: 1   MNRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           ALK+HGIT++FL DKP F  I   F ++   +N+  + HNA FDVGFIN EL+ +NK   
Sbjct: 60  ALKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDVGFINQELEILNKKIK 117

Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                 IIDTL +AR+  P  +N L++LC RY I  SHR+ H A++DS+LL  +Y+ M  
Sbjct: 118 INTFCSIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTG 177

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-- 234
           G   +      N    FK+ KK +     LK +       T +E D H+K +Q +     
Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYMKDKST 233

Query: 235 AIWD 238
            +W+
Sbjct: 234 CLWN 237


>gi|311087143|gb|ADP67223.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 237

 Score =  211 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 95/244 (38%), Positives = 135/244 (55%), Gaps = 16/244 (6%)

Query: 4   KNKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            N+ R I+ D ETTG++       N RIIEIGAVE++D   T   F V++ P GR     
Sbjct: 1   MNRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           ALK+HGIT++FL DKP F  I   F ++   +N+  + HNA FD+GFIN EL+ +NK   
Sbjct: 60  ALKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDIGFINQELEILNKKIK 117

Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                 IIDTL +AR+  P  +N L++LC RY I  SHR+ H A++DS+LL  +Y+ M  
Sbjct: 118 INTFCSIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTG 177

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-- 234
           G   +      N    FK+ KK +     LK +       T +E D H+K +Q +     
Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYMKDKST 233

Query: 235 AIWD 238
            +W+
Sbjct: 234 CLWN 237


>gi|311085987|gb|ADP66069.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 237

 Score =  211 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 95/244 (38%), Positives = 135/244 (55%), Gaps = 16/244 (6%)

Query: 4   KNKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            N+ R I+ D ETTG++       N RIIEIGAVE++D   T   F V++ P GR     
Sbjct: 1   MNRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           ALK+HGIT++FL DKP F  I   F ++   +N+  + HNA FDVGFIN EL+ +NK   
Sbjct: 60  ALKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDVGFINQELEILNKKIK 117

Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                 I+DTL +AR+  P  +N L++LC RY I  SHR+ H A++DS+LL  +Y+ M  
Sbjct: 118 INTFCSIVDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTG 177

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-- 234
           G   +      N    FK+ KK +     LK +       T +E D H+K +Q +     
Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYMKDKST 233

Query: 235 AIWD 238
            +W+
Sbjct: 234 CLWN 237


>gi|262372107|ref|ZP_06065386.1| ribonuclease HI [Acinetobacter junii SH205]
 gi|262312132|gb|EEY93217.1| ribonuclease HI [Acinetobacter junii SH205]
          Length = 448

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 132/229 (57%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   + NDRIIE+GA+E+++   T  +  +++ P   K   +++ +HGIT
Sbjct: 221 RQLILDTETTGFYYQDNDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVDVHGIT 278

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           DEFL DKP ++ I    ++F   + AE IAHNA FD+ F++ E +R     L     + D
Sbjct: 279 DEFLADKPKYAEIADVLFEFL--KGAEIIAHNATFDMNFLDMEFKRAGLPALSEVCEVTD 336

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +L+DVY+ M  G  Q++F  
Sbjct: 337 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGG--QVSFDM 394

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                   ++ K T   + +   D P+    T +EL +H+  ++   + 
Sbjct: 395 DALSQTEQQQNKTTRQRVQI---DLPIIY-PTDDELQQHETWVKQFEEK 439


>gi|58584800|ref|YP_198373.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58419116|gb|AAW71131.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 231

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 90/241 (37%), Positives = 138/241 (57%), Gaps = 11/241 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            +NK+R+IV D ETTGLD +   RIIEIG VEL++   T + F  +L P  R     + K
Sbjct: 1   MENKLREIVLDTETTGLDIESGHRIIEIGCVELINRIPTGKVFHKYLNPE-RDIPYHSFK 59

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI++EFL+DKP FS +  EF DF +      I HNA+FD+ F+N EL ++N   +   
Sbjct: 60  IHGISEEFLEDKPLFSDVVFEFLDFIS--GDILIIHNAEFDIKFLNMELGKLNARLISSD 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           R++DTL +AR+K   S   L++LCKR+ I++ +R  HGAL D+ LL+ VY+++  G    
Sbjct: 118 RVLDTLPLARKKFVGSPASLSALCKRFDISLENRELHGALTDAGLLAKVYVELTGGLQTF 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
            F  +  +D      +  V N++  +         + EE++EH K +  +  N +W   I
Sbjct: 178 LFDNECKQDHNSAFIQHKVRNLTCREHS------PSNEEINEHRKLLGKI-DNPLWKERI 230

Query: 242 S 242
            
Sbjct: 231 E 231


>gi|71892007|ref|YP_277737.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796113|gb|AAZ40864.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 249

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 91/252 (36%), Positives = 141/252 (55%), Gaps = 17/252 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           +  N +R+IV D ETTG++      +  R+IEIGAVE+++   T+ TF V+L PN R   
Sbjct: 1   MSTNIIRQIVLDTETTGMNKFGPHYEGHRVIEIGAVEIINRHLTDNTFHVYLKPN-RMID 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114
            EA+++HGI+D+FLK+KP FS I +EF  F   + +E I HNA FD+GF+N EL+     
Sbjct: 60  IEAIQVHGISDQFLKNKPIFSEIINEFLTFI--RGSELIIHNASFDLGFLNQELRICKAN 117

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH-RSKHGALLDSHLLSDVYI 172
            K       +ID+L +AR+K P  RN L++LC+RY I   + R+ H ALLD+ LL++V++
Sbjct: 118 SKKIESYCTVIDSLKLARKKFPGQRNSLDALCERYSINNGNRRNLHSALLDARLLANVFL 177

Query: 173 KMMVGGSQINFG--FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
            M  G  ++ F     TN           + N   + +         ++E   H++ + +
Sbjct: 178 SMSGGQIKMKFMEIMNTNISNNKINNIIGLNNTKCINKRSLRIIYANEQEKLAHEEYLDS 237

Query: 231 ---LGKNAIWDR 239
              L K  IW +
Sbjct: 238 IQQLNKFCIWRQ 249


>gi|241758776|ref|ZP_04756889.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114]
 gi|241320984|gb|EER57197.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114]
          Length = 245

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 83/245 (33%), Positives = 133/245 (54%), Gaps = 15/245 (6%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            R+I+ D ETTGL  +N DR++E   +E+++   T+    +++ P  R    EA K+HG+
Sbjct: 3   QRQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGL 61

Query: 66  TDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--S 121
           T E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++    
Sbjct: 62  TIEVLEAKNAPPFAQVGKQIADFI--RGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGC 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++ DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M       
Sbjct: 120 KVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQ--- 176

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            F     E     E K+TV  I+  KR  +    +   +EL  H+K +  LG+  +W + 
Sbjct: 177 -FDLMGGEAEEEGEVKQTV--IAETKRTSQLKVIKANADELAAHEKYLDDLGEACVWRKA 233

Query: 241 ISSNQ 245
            +S++
Sbjct: 234 ETSDE 238


>gi|311086562|gb|ADP66643.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 237

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 96/243 (39%), Positives = 134/243 (55%), Gaps = 16/243 (6%)

Query: 4   KNKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            N+ R I+ D ETTG++       N RIIEIGAVE++D   T   F V++ P GR     
Sbjct: 1   MNRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           ALK+HGIT++FL DKP F  I   F ++   +N+  + HNA FDVGFIN EL+ +NK   
Sbjct: 60  ALKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDVGFINQELEILNKKIK 117

Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                 IIDTL +AR+  P  +N L++LC RY I  SHR+ H A++DS+LL  +Y+ M  
Sbjct: 118 INTFCSIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTG 177

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-- 234
           G   +      N    FK+ KK +     LK +       T +E D H+K +Q +     
Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYMKDKST 233

Query: 235 AIW 237
            +W
Sbjct: 234 CLW 236


>gi|114777499|ref|ZP_01452496.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114552281|gb|EAU54783.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 300

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 92/248 (37%), Positives = 129/248 (52%), Gaps = 22/248 (8%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNSPEALK 61
            MR I+ D ETTGL     DR++EIGA+E+L+          F  ++ P  R    E ++
Sbjct: 52  DMRLIMLDTETTGLSPLNGDRMVEIGAIEVLNRKVLSGDKHVFHRYINPE-RNIPDEVVR 110

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI +  +KD+P+F  I  EF DF   + A  + HNA FD+GFI  EL+  N   +   
Sbjct: 111 IHGIDNAKVKDQPTFREIAQEFLDFI--EGATLVIHNAPFDLGFIMNELRINNFPEIGHM 168

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++IDTL  AR KHP  RN+L++LC RY I   HR  HGALLDS LL++VY+ M  GG Q 
Sbjct: 169 QVIDTLVFAREKHPHQRNNLDALCDRYNIERGHRELHGALLDSELLAEVYLGMT-GGRQF 227

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR--------ITKEELDEHDKTIQTL-- 231
           + G      R        +P  S  + +K    R        I +E+L  H   ++ +  
Sbjct: 228 SLGMDAT--RLPASAFVQLPETSRGRSEKAETARIMRRKALHIPEEDLSAHHLMLKRIHK 285

Query: 232 --GKNAIW 237
             G   IW
Sbjct: 286 ESGGQCIW 293


>gi|146329568|ref|YP_001209798.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus
           VCS1703A]
 gi|146233038|gb|ABQ14016.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus
           VCS1703A]
          Length = 233

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 129/236 (54%), Gaps = 14/236 (5%)

Query: 7   MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            R ++FD ETTG++      ++  RIIEIG VEL+D   T   F  +L P  +   P+A 
Sbjct: 3   FRSVIFDTETTGMNFESDNKAEGHRIIEIGCVELIDRVPTEHYFHCYLNPE-QPVDPQAF 61

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-- 118
           K+HGI+DEFL DKP F  +  EF  +    + E +AHN  FD  FI+ ELQ    D    
Sbjct: 62  KVHGISDEFLADKPFFKDVLPEFEAYLASAD-ELVAHNIAFDRQFIDRELQLAGCDYRLG 120

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D   ++D+L IAR K   +RN+L++LCKR+G+  + R  HGALLD+ LL++VY+K+  G 
Sbjct: 121 DKFTLVDSLKIAREKFAGARNNLDALCKRFGVDNTGRELHGALLDAQLLAEVYLKLTGGQ 180

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP-LFTRITKEELDEHDKTIQTLGK 233
           S ++F           E+K      +  K     L   + + E   H+K ++ L +
Sbjct: 181 SDLSFAHPMMASARRAEQKTAA---TFAKTPCAWLPVDVPEAERALHEKILKQLKE 233


>gi|160899427|ref|YP_001565009.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1]
 gi|160365011|gb|ABX36624.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1]
          Length = 238

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 91/240 (37%), Positives = 131/240 (54%), Gaps = 15/240 (6%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL + N DR+IE+G VE+++   T     ++    GR + P+AL++HGIT
Sbjct: 3   RQIILDTETTGLSADNGDRLIELGCVEMVNRKLTGNNLHLYFN-AGRDSHPDALRVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124
            EFLKDKP F     E W++   Q AE I HNA FD+GF+N EL+  N+ P+      +I
Sbjct: 62  TEFLKDKPRFEHKVDEIWEYL--QGAELIIHNAPFDLGFLNKELELANRPPIRQCVSGVI 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL +A+   P  RN L+SLC R  +  S R+ HGALLD+ LL+DVYI +  G   +   
Sbjct: 120 DTLVMAKEMFPGKRNSLDSLCDRLEVDNSGRTLHGALLDAELLADVYINLTRGQEALL-- 177

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDRY 240
               E+    E    V  + L    K        +EL  H+  +  + K++    IW  +
Sbjct: 178 --MAEEPVQSEGGLVVAQVDLASF-KLRVVHANDQELAAHEDVMVQMDKSSGGKTIWRGF 234


>gi|149912883|ref|ZP_01901417.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b]
 gi|149813289|gb|EDM73115.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b]
          Length = 244

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 94/247 (38%), Positives = 140/247 (56%), Gaps = 19/247 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTG D +  DRI+EIGA+EL ++  T RTF  ++ P GR    EA ++HGI
Sbjct: 1   MREIVLDTETTGFDPEQGDRIVEIGALELYNHMPTGRTFHHYINP-GRGMPQEAFEVHGI 59

Query: 66  TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
             + L             +DKP F  + + F +F    NA+ + HNA FD+ F+NAEL  
Sbjct: 60  GPDLLDAPRPPRPGEITLRDKPPFDHVANAFIEFVG--NAKLVIHNAAFDMKFLNAELGW 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +    L   + IDTL+IAR+K P S   L++LC+R+ I  + R+ HGALLDS +L++VY+
Sbjct: 118 LKLPLLPWEQAIDTLAIARQKFPGSPASLDALCRRFAIDNTARTLHGALLDSEILAEVYL 177

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
           +++ GG Q +F    +         +T        R +PL  RIT+ E   H   I+T+G
Sbjct: 178 ELI-GGRQPDFALSAH-PVAQSGSAETDIGWRPKPRPQPLPPRITETEAAAHAAFIETMG 235

Query: 233 KNAIWDR 239
             ++W +
Sbjct: 236 DGSLWKK 242


>gi|294085203|ref|YP_003551963.1| DNA polymerase III subunit epsilon [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664778|gb|ADE39879.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 255

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 87/260 (33%), Positives = 132/260 (50%), Gaps = 32/260 (12%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTG++ +   RIIEIG +ELL +  T     +++ P  R+    A+K+HG+
Sbjct: 1   MREIALDTETTGINPRDGHRIIEIGCLELLHHLPTGNKLHIYINPE-REIDEGAVKVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T  FL DKP F+ I  EF  F        + HNA FD+GF+NAEL R+++  L   R +D
Sbjct: 60  TSAFLADKPLFADIVDEFLAFIGGDQ--MVIHNASFDMGFLNAELARLDRPVLPMDRAVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR+K P ++ +L++LC+R+ I   HR  HGAL+D+ LL+ VYI+++ GG Q   G 
Sbjct: 118 TLMMARKKFPGAQANLDALCRRFEIDNGHRDLHGALIDADLLASVYIELL-GGKQPGLGL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRD-------------------------KPLFTRI-TKE 219
                   +       +   L                            +P+ T   + E
Sbjct: 177 DNGTGSGARSRAGPAGSAGSLGSAGWSGSDHGAETANGTGHFAMSETAIRPIRTHAPSPE 236

Query: 220 ELDEHDKTIQTLGKNAIWDR 239
           E   HD  +  + +N IW +
Sbjct: 237 EQAAHDAFLDGM-ENPIWRQ 255


>gi|225075242|ref|ZP_03718441.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens
           NRL30031/H210]
 gi|224953417|gb|EEG34626.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens
           NRL30031/H210]
          Length = 245

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 83/245 (33%), Positives = 133/245 (54%), Gaps = 15/245 (6%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            R+I+ D ETTGL  +N DR++E   +E+++   T+    +++ P  R    EA K+HG+
Sbjct: 3   QRQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGL 61

Query: 66  TDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--S 121
           T E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++    
Sbjct: 62  TIEVLEAKNAPPFAQVGKQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGC 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++ DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M       
Sbjct: 120 KVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQ--- 176

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            F     E     E K+TV  I+  KR  +    +   +EL  H+K +  LG+  +W + 
Sbjct: 177 -FDLMGGEAEEEGEVKQTV--IAETKRTSQLKVVKANADELAAHEKYLDDLGEACVWRKA 233

Query: 241 ISSNQ 245
            +S++
Sbjct: 234 ETSDE 238


>gi|33519691|ref|NP_878523.1| DNA polymerase III epsilon subunit [Candidatus Blochmannia
           floridanus]
 gi|33517354|emb|CAD83739.1| DNA polymerase III epsilon subunit [Candidatus Blochmannia
           floridanus]
          Length = 258

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 85/259 (32%), Positives = 131/259 (50%), Gaps = 24/259 (9%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           +  N  R +V D ETTG++      +  RIIEIGAVE+++   TN  F V+L PN R   
Sbjct: 1   MNINSNRYVVLDTETTGMNKFGVHYEGHRIIEIGAVEIINRRLTNNQFHVYLNPN-RSVD 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            EA  +HGI+D+FL D+P F  I ++F  F   + +  + HNA FD+GF+N EL  I  +
Sbjct: 60  SEAFAIHGISDQFLVDQPCFLDIANDFLQFI--RGSTLVIHNASFDLGFLNFELHNIYLN 117

Query: 117 ---PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                    +ID+L +AR+  P  RN L++LC+RY I  S R  H AL+D+ LL+ V++ 
Sbjct: 118 SRTVESYCTVIDSLKLARKIFPGQRNSLDALCERYCIKNSKRILHNALIDAQLLAYVFLV 177

Query: 174 MMVGGSQINFGFKTNED---------RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
           M  G ++I F    +               + +  + N    ++        T  E  EH
Sbjct: 178 MTGGQTRIQFMDMLDNSDTNILNNTITHDNKFELCLNNSVCTEKKSLKILYATSIEKLEH 237

Query: 225 DKTIQTLGK----NAIWDR 239
           +K +  + K      +W +
Sbjct: 238 EKYLDFVMKASNNQCLWRK 256


>gi|254468292|ref|ZP_05081698.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13]
 gi|207087102|gb|EDZ64385.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13]
          Length = 219

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 89/227 (39%), Positives = 129/227 (56%), Gaps = 14/227 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGLD  +  RIIEI AVE+++   TN  F V++ P  R+    A ++HG+
Sbjct: 1   MRQIFLDTETTGLDPAQGHRIIEIAAVEMINRQVTNNQFHVYINPE-REIDEAAQEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII- 124
           T EFL DKP F SI  +F  F    ++E I HNA FD+GF+N EL RI K  ++    + 
Sbjct: 60  TLEFLSDKPGFESISEKFISFIA--DSELIIHNAPFDIGFLNMELGRIKKGVVEDYAEVI 117

Query: 125 -DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            D+L +AR   P  RN+L++LC+ YG+  S R+ HGALLDS LL++V+I M  G   +  
Sbjct: 118 TDSLVMARELRPGQRNNLDALCRHYGVDNSERNLHGALLDSLLLAEVFIGMTRGQEALEI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
            F   E      +K  +        +K      ++EEL+ H + ++ 
Sbjct: 178 DFNNQEKLSIDFDKDIL--------NKLKVVSASQEELELHQEYLKK 216


>gi|325983345|ref|YP_004295747.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
 gi|325532864|gb|ADZ27585.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
          Length = 245

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 94/241 (39%), Positives = 129/241 (53%), Gaps = 18/241 (7%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGL+ K   RI+EI AVEL +   T   F  +L P  R++   AL++HG+
Sbjct: 1   MRQIVLDTETTGLECKLGHRIVEIAAVELCNRQFTGSHFHYYLNPE-RESDEGALQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T EFL+DK  F  I  EF +F +  +AE I HNA FDVGF+N EL   N   LD   S+I
Sbjct: 60  TMEFLQDKAKFYEISREFLNFIS--DAELIIHNAPFDVGFLNHELGLCNLKALDNYCSQI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            DTL +A+  HP  RN+L++LC+RY I  S R  HGALLD+ LL++VY+ M  G   +  
Sbjct: 118 TDTLKLAKELHPGKRNNLDALCERYNIDNSKRKLHGALLDAELLAEVYLAMTRGQESLLI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239
                E           P+   L          T EE   H   ++ + +      +W+ 
Sbjct: 178 ELDYVES--------VQPSQIDLDNSDLRIIAATAEEKARHCGILEEIARASDNKCLWNN 229

Query: 240 Y 240
           +
Sbjct: 230 F 230


>gi|34496712|ref|NP_900927.1| DNA-directed DNA polymerase subunit epsilon [Chromobacterium
           violaceum ATCC 12472]
 gi|34102567|gb|AAQ58932.1| DNA-directed DNA polymerase, epsilon chain [Chromobacterium
           violaceum ATCC 12472]
          Length = 239

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 86/246 (34%), Positives = 126/246 (51%), Gaps = 17/246 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTGLD +   RIIE   +E++    T +   +++ P  R+  PEA ++HGI
Sbjct: 1   MRQIILDTETTGLDPQQGHRIIEFAGLEMVGRKLTGKHLHLYIHPE-REIDPEAQRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           + EFL  KP F+ +  E  DF   ++AE I HNA FDVGF+NAE  +   +P+    + +
Sbjct: 60  SLEFLAGKPVFAKVAHEIADFL--RDAELIIHNAPFDVGFLNAEFAKAGIEPVGKLCASV 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL+ AR   P  RN L++LC R+ I  S+R+ HGAL+D  LLS+VY+ M  G   +  
Sbjct: 118 IDTLAEARDMFPGKRNSLDALCDRFEIDRSNRTLHGALVDCELLSEVYLWMTRGQESLAM 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239
             +        E           +R        ++ E  EH   +  L K      +W  
Sbjct: 178 DIEV-------ELPGGDAGAIQFERKPLKVLAASEAEEAEHQAYLDVLDKAVKGICVWRG 230

Query: 240 YISSNQ 245
             S  Q
Sbjct: 231 LASPAQ 236


>gi|319944001|ref|ZP_08018281.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia
           mirabilis ATCC 51599]
 gi|319742762|gb|EFV95169.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia
           mirabilis ATCC 51599]
          Length = 238

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 80/230 (34%), Positives = 122/230 (53%), Gaps = 9/230 (3%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++V D ETTGL++ K  RIIEIG VE+++   T     +++ P  R+    A  +HG+T
Sbjct: 6   RQVVLDTETTGLEASKGHRIIEIGCVEMVNRRITRNNLHLYINPE-REVDEGAAAVHGMT 64

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-- 124
            + L+DKP+F+ I  +F DF   + AE I HNA FD GF++AEL R+ +           
Sbjct: 65  WDDLRDKPTFAQIVDQFLDFC--RGAEIIIHNASFDTGFLDAELARLGRGTFASHVACVT 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           D+L++AR ++P  RN+L++LC+R  +   HR+ HGALLDS LL++VY+ M  G    + G
Sbjct: 123 DSLAMARERYPGKRNNLDALCERLMVPNKHRTLHGALLDSELLAEVYLGMTRGQGSFDIG 182

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
               +D                          T  E   H++ +  L K 
Sbjct: 183 SSAEDDEGGAVADAGGGRWPP---TGLRVRLATDAERQLHEQGLVALEKQ 229


>gi|240142395|ref|YP_002966905.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
 gi|240012339|gb|ACS43564.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
          Length = 248

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 82/235 (34%), Positives = 125/235 (53%), Gaps = 6/235 (2%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            R +V D ETTG D K  DRIIE+G VE+++  +T R F  ++ P  R    +A  +HGI
Sbjct: 5   QRIVVGDTETTGTDPKGGDRIIEVGFVEIVNGFRTGRHFHSYVNPE-RPVPADATAIHGI 63

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE LKD P F+++ ++  +F  +  A +  HNA FD+GF + E   ++   LD SR+ D
Sbjct: 64  TDEMLKDAPVFAAVAADIVEFIADSPAIF--HNAPFDLGFFDLEFGLLSLPSLDRSRVTD 121

Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV-GGSQINF 183
           +L  AR+  P  ++  L++LC RYGI  + R+KHGAL+DS LL+DV++ M   GG    F
Sbjct: 122 SLVHARKLLPAGAKAGLDALCNRYGIDRTRRTKHGALMDSELLADVWLAMTGTGGLAHGF 181

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           G     +      +  +   +       L    +  E + H   + T     +W 
Sbjct: 182 GPAAQAEESAAVGRVPLRRHAPEVAASLLRLVPSDHEAERHSSFVATQLVKPLWK 236


>gi|15616860|ref|NP_240073.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11132278|sp|P57337|DPO3E_BUCAI RecName: Full=DNA polymerase III subunit epsilon
 gi|25299956|pir||G84958 DNA-directed DNA polymerase (EC 2.7.7.7) epsilon chain [imported] -
           Buchnera sp. (strain APS)
 gi|10038924|dbj|BAB12959.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 237

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 97/244 (39%), Positives = 134/244 (54%), Gaps = 16/244 (6%)

Query: 4   KNKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            N+ R I+ D ETTG++       N RIIEIGAVE++D   T   F V++ P GR     
Sbjct: 1   MNRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           ALK+HGIT++FL DKP F  I   F ++   +N+  + HNA FDVGFIN EL+ +NK   
Sbjct: 60  ALKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDVGFINQELEILNKKIK 117

Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                 IIDTL IAR   P  +N L++LC RY I  SHR+ H A++DS+LL  +Y+ M  
Sbjct: 118 INTFCSIIDTLKIARELFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTG 177

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-- 234
           G   +      N    FK+ KK +     LK +       T +E D H+K +Q +     
Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYMKDKST 233

Query: 235 AIWD 238
            +W+
Sbjct: 234 CLWN 237


>gi|261380159|ref|ZP_05984732.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703]
 gi|284796997|gb|EFC52344.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703]
          Length = 245

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 82/245 (33%), Positives = 132/245 (53%), Gaps = 15/245 (6%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            R+I+ D ETTGL  +N DR++E   +E+++   T+    +++ P  R    EA K+HG+
Sbjct: 3   QRQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGL 61

Query: 66  TDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--S 121
           T E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++    
Sbjct: 62  TIEVLEAKNAPPFAQVGKQIADFI--RGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGC 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++ DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M       
Sbjct: 120 KVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQ--- 176

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            F     E     E K+TV  I+  KR  +    +   +EL  H+K +  LG+  +W + 
Sbjct: 177 -FDLMGGEAEEEGEVKQTV--IAETKRTSQLKVIKANADELAAHEKYLDDLGEACVWRKA 233

Query: 241 ISSNQ 245
            + ++
Sbjct: 234 ETPDE 238


>gi|255320390|ref|ZP_05361574.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens
           SK82]
 gi|262379328|ref|ZP_06072484.1| ribonuclease HI [Acinetobacter radioresistens SH164]
 gi|255302585|gb|EET81818.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens
           SK82]
 gi|262298785|gb|EEY86698.1| ribonuclease HI [Acinetobacter radioresistens SH164]
          Length = 455

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 78/235 (33%), Positives = 130/235 (55%), Gaps = 16/235 (6%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P   K   +++ +HGIT
Sbjct: 228 RQLILDTETTGFYFQDGDRIIEVGAIEMVNRKLTGSSIHIYINPE--KPVGDSVDIHGIT 285

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           DEFL+DKP ++ I    +++   + AE IAHNA FD+ F++ E +R     L     + D
Sbjct: 286 DEFLQDKPRYAEIAEVLFNYL--KGAEIIAHNASFDMNFLDMEFKRAGFPALSEVCEVTD 343

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M  G    +   
Sbjct: 344 TLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDA 403

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ----TLGKNAI 236
            +  +    +  + V N+ L           + EEL  H++ +Q      G+  +
Sbjct: 404 LSQSEISQSQASRQVINVDL------PVIVPSPEELAAHEEWVQHYQEKNGEPCL 452


>gi|260557363|ref|ZP_05829578.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606]
 gi|260408989|gb|EEX02292.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606]
          Length = 459

 Score =  208 bits (529), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P   K   +++++HGIT
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVQVHGIT 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           DEFL DKP ++ I    +++   + AE IAHNA FD+ F++ E +R+    L     + D
Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M  G  Q++F  
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 405

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    ++K T   + +    +      + EEL+ H+  ++   K 
Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450


>gi|50084331|ref|YP_045841.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. ADP1]
 gi|49530307|emb|CAG68019.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
           ,epsilon subunit, 3-5 exonucleolytic proofreading
           function] [Acinetobacter sp. ADP1]
          Length = 450

 Score =  208 bits (529), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 131/225 (58%), Gaps = 12/225 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P   K   +++ +HGIT
Sbjct: 223 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVDVHGIT 280

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           DEFL DKP ++ I    +++   + AE IAHNA FD+ F++ E +R     L     + D
Sbjct: 281 DEFLLDKPKYAEIAEPLFEYL--KGAEIIAHNASFDMNFLDMEFKRAGLPTLSEVCEVTD 338

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M  G  Q++F  
Sbjct: 339 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 396

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
                R   + K     I   + D P   R +  EL++H++ +++
Sbjct: 397 DALSQREQNQRKGQRARI---EADLP-VIRPSANELEKHNEWVKS 437


>gi|261400727|ref|ZP_05986852.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC
           23970]
 gi|269209492|gb|EEZ75947.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC
           23970]
          Length = 244

 Score =  208 bits (529), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 129/243 (53%), Gaps = 13/243 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA K+HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAAKVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IEVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M      + 
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL- 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                 ED   +   +   ++ + +  K    +  + EL  H+K +  LG++ IW +   
Sbjct: 180 ----MGEDEKEEPAAQPAVSVEMKRSAKLKVVKADETELAAHEKYLDGLGESCIWRKEAV 235

Query: 243 SNQ 245
            ++
Sbjct: 236 PSE 238


>gi|239503330|ref|ZP_04662640.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB900]
          Length = 459

 Score =  207 bits (528), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P   K   +++++HGIT
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVQVHGIT 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           DEFL DKP ++ I    +++   + AE IAHNA FD+ F++ E +R+    L     + D
Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M  G  Q++F  
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 405

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    ++K T   + +    +      + EEL+ H+  ++   K 
Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450


>gi|169796679|ref|YP_001714472.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter baumannii AYE]
 gi|184157414|ref|YP_001845753.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii ACICU]
 gi|213156097|ref|YP_002318517.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii
           AB0057]
 gi|215484167|ref|YP_002326392.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           AB307-0294]
 gi|301344775|ref|ZP_07225516.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB056]
 gi|301510946|ref|ZP_07236183.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB058]
 gi|169149606|emb|CAM87496.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
           ,epsilon subunit, 3-5 exonucleolytic proofreading
           function] [Acinetobacter baumannii AYE]
 gi|183209008|gb|ACC56406.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU]
 gi|213055257|gb|ACJ40159.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii
           AB0057]
 gi|213985858|gb|ACJ56157.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           AB307-0294]
 gi|322507294|gb|ADX02748.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           1656-2]
 gi|323517313|gb|ADX91694.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 459

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P   K   +++++HGIT
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVQVHGIT 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           DEFL DKP ++ I    +++   + AE IAHNA FD+ F++ E +R+    L     + D
Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M  G  Q++F  
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 405

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    ++K T   + +    +      + EEL+ H+  ++   K 
Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450


>gi|169633080|ref|YP_001706816.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter baumannii SDF]
 gi|169151872|emb|CAP00707.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
           ,epsilon subunit, 3-5 exonucleolytic proofreading
           function] [Acinetobacter baumannii]
          Length = 459

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P   K   +++++HGIT
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVQVHGIT 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           DEFL DKP ++ I    +++   + AE IAHNA FD+ F++ E +R+    L     + D
Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M  G  Q++F  
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 405

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    ++K T   + +    +      + EEL+ H+  ++   K 
Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450


>gi|126641104|ref|YP_001084088.1| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978]
          Length = 459

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P   K   +++++HGIT
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVQVHGIT 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           DEFL DKP ++ I    +++   + AE IAHNA FD+ F++ E +R+    L     + D
Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M  G  Q++F  
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 405

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    ++K T   + +    +      + EEL+ H+  ++   K 
Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450


>gi|332852350|ref|ZP_08434135.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013150]
 gi|332870148|ref|ZP_08439060.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013113]
 gi|332875093|ref|ZP_08442929.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6014059]
 gi|332729293|gb|EGJ60634.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013150]
 gi|332732415|gb|EGJ63671.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013113]
 gi|332736710|gb|EGJ67701.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6014059]
          Length = 497

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P   K   +++++HGIT
Sbjct: 270 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVQVHGIT 327

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           DEFL DKP ++ I    +++   + AE IAHNA FD+ F++ E +R+    L     + D
Sbjct: 328 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 385

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M  G  Q++F  
Sbjct: 386 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 443

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    ++K T   + +    +      + EEL+ H+  ++   K 
Sbjct: 444 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 488


>gi|255065954|ref|ZP_05317809.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256]
 gi|255049865|gb|EET45329.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256]
          Length = 255

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 127/243 (52%), Gaps = 15/243 (6%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL ++  DR++E   +E+++   T     +++ P  R    EA K+HG+T
Sbjct: 19  RQIILDTETTGLYAEGGDRLVEFAGLEMINRQITGNNLHLYVHPE-RDMPEEAAKVHGLT 77

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   ++AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 78  IEVLEEKNAPPFAEVGRQIADFI--RDAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCT 135

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R  +  S R  HGAL+D  LL +VY+ M        
Sbjct: 136 VTDTLAMAREMFPGQKASLDALCNRLSVDRSKRVLHGALIDCELLGEVYLAMTRQQ---- 191

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
           F     E    +E K  +  I+  KR       +   EEL  H++ +  LG+  +W +  
Sbjct: 192 FDLMGGEKEEDEEVKPVI--IAETKRPAHLKVIKANAEELAAHEQYLDGLGEACLWRKAE 249

Query: 242 SSN 244
           ++ 
Sbjct: 250 TAG 252


>gi|193076772|gb|ABO11486.2| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978]
          Length = 497

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P   K   +++++HGIT
Sbjct: 270 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVQVHGIT 327

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           DEFL DKP ++ I    +++   + AE IAHNA FD+ F++ E +R+    L     + D
Sbjct: 328 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 385

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M  G  Q++F  
Sbjct: 386 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 443

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    ++K T   + +    +      + EEL+ H+  ++   K 
Sbjct: 444 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 488


>gi|319638369|ref|ZP_07993131.1| DNA polymerase subunit III [Neisseria mucosa C102]
 gi|317400118|gb|EFV80777.1| DNA polymerase subunit III [Neisseria mucosa C102]
          Length = 245

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 81/245 (33%), Positives = 131/245 (53%), Gaps = 15/245 (6%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            R+I+ D ETTGL  +N DR++E   +E+++   T+    +++ P  R    EA K+HG+
Sbjct: 3   QRQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGL 61

Query: 66  TDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--S 121
           T E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++    
Sbjct: 62  TIEVLEAKNAPPFAQVGKQIADFI--RGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGC 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++ DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M       
Sbjct: 120 KVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQ--- 176

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
            F     E     E K T+  I+  KR  +    +   +EL  H+K +  LG+  +W + 
Sbjct: 177 -FDLMGGEAEEEGEVKPTI--IAETKRTSQLKVIKADADELAAHEKYLDDLGEACVWRKA 233

Query: 241 ISSNQ 245
            + ++
Sbjct: 234 ETPDE 238


>gi|262368670|ref|ZP_06061999.1| ribonuclease HI [Acinetobacter johnsonii SH046]
 gi|262316348|gb|EEY97386.1| ribonuclease HI [Acinetobacter johnsonii SH046]
          Length = 474

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 128/224 (57%), Gaps = 12/224 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P  +K   ++  +HGI+
Sbjct: 247 RQLILDTETTGFYYQDGDRIIEVGAIEMVNRKLTGSSIHIYINP--KKPVGDSENVHGIS 304

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           D+FLKDKP +  I    + +   + AE IAHNA FD+ F++ E +R     L     + D
Sbjct: 305 DDFLKDKPLYQEIADTLFAYL--KGAEIIAHNASFDMNFLDMEFKRAGFVALSEVCAVTD 362

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +L+DVY+ M  G    +   
Sbjct: 363 TLAMAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILADVYLAMTGGQVSFDMDA 422

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
            ++ ++   + ++   +I L         + + EEL+ H+  ++
Sbjct: 423 LSHSEQQNGQSQRQALDIELA------VIQPSAEELEAHETWVK 460


>gi|226952576|ref|ZP_03823040.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. ATCC 27244]
 gi|226836656|gb|EEH69039.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. ATCC 27244]
          Length = 452

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 130/229 (56%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P   K   +++ +HGIT
Sbjct: 225 RQLILDTETTGFYYQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVDVHGIT 282

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           DEFL+DKP ++ I    + +   + AE IAHNA FD+ F++ E +R+    L     + D
Sbjct: 283 DEFLQDKPKYAEIADALFAYL--KGAEIIAHNATFDMNFLDMEFKRVGLPLLSEVCEVTD 340

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +L+DVY+ M  G  Q++F  
Sbjct: 341 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGG--QVSFDI 398

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    + K T   + +         R ++ EL+EH+  ++   + 
Sbjct: 399 DALSQHEQNQNKTTRQRVQID----LAVIRPSEHELNEHETWVKQFEEK 443


>gi|309378712|emb|CBX22662.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 244

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 128/243 (52%), Gaps = 13/243 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IEVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M      + 
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL- 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                 ED   +   +   +  + +  K    +  + EL  H+K +  LG++ IW +   
Sbjct: 180 ----MGEDEKEEPAAQPAVSAEMKRSAKLKVVKADEAELAAHEKYLDGLGESCIWRKEAV 235

Query: 243 SNQ 245
            ++
Sbjct: 236 PSE 238


>gi|301596826|ref|ZP_07241834.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB059]
          Length = 438

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P   K   +++++HGIT
Sbjct: 211 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVQVHGIT 268

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           DEFL DKP ++ I    +++   + AE IAHNA FD+ F++ E +R+    L     + D
Sbjct: 269 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 326

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M  G  Q++F  
Sbjct: 327 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 384

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    ++K T   + +    +      + EEL+ H+  ++   K 
Sbjct: 385 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 429


>gi|32490818|ref|NP_871072.1| hypothetical protein WGLp069 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166024|dbj|BAC24215.1| dnaQ [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 246

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 92/243 (37%), Positives = 134/243 (55%), Gaps = 15/243 (6%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++ N  R+IV D ETTG++         RIIEIGA+E+++   T R F  +L P+ R   
Sbjct: 1   MKINTERQIVLDTETTGMNKNGPHYYGHRIIEIGAIEMINRRLTGRCFHTYLKPD-RLVE 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            EA K+HGI+DEFL  +P+F  I  +F +F   + +E I HN+ FD+GFIN E+Q  NK+
Sbjct: 60  IEAFKIHGISDEFLFFQPTFEEIMEKFINFI--KGSELIIHNSVFDIGFINNEIQLCNKN 117

Query: 117 PLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             +      +IDTL +AR   P  RN+L++L  RYGI  + R  HGALLD+ +LS+VY+ 
Sbjct: 118 LNNINYYCSVIDTLKLARNIFPGKRNNLDALSDRYGIDTTKRILHGALLDAEILSNVYLL 177

Query: 174 MMVGGSQINFG----FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
           M  G   INF           +          N    K  KP+     +EE+ EH K ++
Sbjct: 178 MTGGQIPINFSKKKNNNFINKKIKNNFNNFKKNKKYNKIIKPIVIYANEEEIHEHKKFMK 237

Query: 230 TLG 232
           ++ 
Sbjct: 238 SIN 240


>gi|254796828|ref|YP_003081665.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str.
           Illinois]
 gi|254590057|gb|ACT69419.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str.
           Illinois]
          Length = 228

 Score =  205 bits (522), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 97/238 (40%), Positives = 141/238 (59%), Gaps = 17/238 (7%)

Query: 6   KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + RK++ D ETTGLD KN DR+IEIG VE++D+  T   F ++L P  R+ S EA ++HG
Sbjct: 3   QRRKVILDTETTGLDMKNGDRVIEIGCVEMVDFRITGEIFHIYLNPE-REISKEATRVHG 61

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRI 123
           IT E L D P F  I  +F  F     +E +AHNA FD+ F+N+EL R   +  +    +
Sbjct: 62  ITFEQLADSPKFIDIADDFLQFIGS--SEIVAHNASFDIRFLNSELIRARQRRLIKLENV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL++AR+  P S   L++LC+R+ I++  R  HGALLD+ LL+ VYI++   GSQ++ 
Sbjct: 120 IDTLAMARKIFPGSPASLDALCRRFRISLEQREFHGALLDAQLLARVYIEL-SKGSQVSM 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
            F   E      EKK        +R+K +   IT EE   H + I+ L K+ +WD  +
Sbjct: 179 SF--LEGSSASSEKKM-----FKEREKLI---ITPEESLAHSELIKRL-KDPLWDEIL 225


>gi|260550748|ref|ZP_05824956.1| ribonuclease HI [Acinetobacter sp. RUH2624]
 gi|260406254|gb|EEW99738.1| ribonuclease HI [Acinetobacter sp. RUH2624]
          Length = 459

 Score =  205 bits (522), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P   K   E+  +HGI+
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGESENIHGIS 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           D+FLKDKP ++ I    +++   + AE IAHNA FD+ F++ E +R+    L     + D
Sbjct: 290 DDFLKDKPVYADIADTLFEYL--KGAEIIAHNATFDMNFLDMEFRRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M  G  Q++F  
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 405

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    ++K T   I +           + EEL+ H+  ++   K 
Sbjct: 406 DALSQSESDQQKTTKARIQID----LPVIYPSDEELNIHETWVKEFEKK 450


>gi|239815139|ref|YP_002944049.1| DNA polymerase III, subunit epsilon [Variovorax paradoxus S110]
 gi|239801716|gb|ACS18783.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus S110]
          Length = 235

 Score =  205 bits (522), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 89/231 (38%), Positives = 137/231 (59%), Gaps = 11/231 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++N DRIIE+G VEL     T     ++  P  R++  +ALK+HG+T
Sbjct: 3   RQIVLDTETTGLSAENGDRIIELGCVELFARKLTGNDLHIYFNPE-RESHEDALKVHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124
            +FL+DKP F+++ ++  ++   + AE I HNA FDVGF+N EL+     PL      + 
Sbjct: 62  TDFLRDKPKFATLANDIVEYL--RGAELIIHNAAFDVGFLNKELELAGLPPLRSFVGEVT 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++A++ +P  RN L++LC R+G+  S+R+ HGA LD+ LL+DVYI +  G   +   
Sbjct: 120 DTLAMAKQVYPGKRNSLDALCDRFGVDRSNRTFHGAKLDAQLLADVYINLTRGQDALLID 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
             +NE      +  TV  I L + D P      ++EL  H+  +  L K++
Sbjct: 180 VASNEPA----QGTTVVAIDLSQFDLP-VIMAAEQELAAHEAVLSQLDKSS 225


>gi|163797056|ref|ZP_02191011.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199]
 gi|159177572|gb|EDP62125.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199]
          Length = 230

 Score =  205 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 85/232 (36%), Positives = 136/232 (58%), Gaps = 6/232 (2%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IV D ETTGLD    DRI+EIG VEL+++  T RT   ++ P  R     A ++HG+
Sbjct: 1   MREIVLDTETTGLDPDTGDRIVEIGCVELINHVPTGRTLHHYINPE-RDMPLGAFEVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + EFL   P F ++  E  +F    +A  + HNA FD+ FINAEL+R+N+  +  S+ +D
Sbjct: 60  SSEFLSAYPVFGALADEILEFLG--DAVLVIHNASFDMKFINAELRRLNRPEIPMSQALD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +ARRK+P ++  L++LC+R+ I   HR+ HGALLD+ LL+ VY++++ GG Q +   
Sbjct: 118 TVQLARRKYPGAQASLDALCRRFEIDNGHRTLHGALLDADLLAAVYLELI-GGRQPDLAL 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
              +        +T  +       +P     + +EL  H   ++++ K+ IW
Sbjct: 177 AAQKPSDESPGSRTAEHREARPYREPRPHAPSADELAAHRTFLESI-KDPIW 227


>gi|313668102|ref|YP_004048386.1| DNA polymerase III, epsilon chain [Neisseria lactamica ST-640]
 gi|313005564|emb|CBN87000.1| DNA polymerase III, epsilon chain [Neisseria lactamica 020-06]
          Length = 244

 Score =  205 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 128/243 (52%), Gaps = 13/243 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            + L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M      + 
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL- 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                 ED   +   +   +  + +  K    +  + EL  H+K +  LG++ IW +   
Sbjct: 180 ----MGEDEKEEPAAQPAVSAEMKRSAKLKVVKADEAELAAHEKYLDGLGESCIWRKEAV 235

Query: 243 SNQ 245
            ++
Sbjct: 236 PSE 238


>gi|332967672|gb|EGK06783.1| DNA-directed DNA polymerase III epsilon subunit [Kingella kingae
           ATCC 23330]
          Length = 252

 Score =  205 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 78/254 (30%), Positives = 132/254 (51%), Gaps = 14/254 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           + +  +R+I+ D ETTG +       DR+IE   +E+++   T     +++ P  R  +P
Sbjct: 1   MTETPIRQIILDTETTGFEHSAAENPDRMIEFAGLEMVNRQFTKNNLHLYIHPQ-RDINP 59

Query: 58  EALKLHGITDEFLK--DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           +A+ +HGIT E L+  + P F+ +  + +DF   + AE I HNAKFDVGF++AE  R+  
Sbjct: 60  DAIAVHGITLEKLESENAPVFAEVAQQIFDFI--KGAELIIHNAKFDVGFLDAEFARVGL 117

Query: 116 DPLDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +     ++DTL +AR ++P  +N L++LC R  +  S R  HGAL+D  LL +VY+ M
Sbjct: 118 PKVKTICTVVDTLEMARDRYPGQKNSLDALCNRLDVDRSRRVLHGALIDCELLGEVYLAM 177

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233
             G   ++  F ++                L + +       + EEL EH++ +  L K 
Sbjct: 178 TRGQFSLDAAFASDVAESSASPVIATTATLLPRPEYLKVQAASPEELAEHEEYLNQLDKA 237

Query: 234 ---NAIWDRYISSN 244
              + I+ +  S N
Sbjct: 238 VDGSCIYRQTDSVN 251


>gi|124267443|ref|YP_001021447.1| DNA polymerase III subunit epsilon [Methylibium petroleiphilum PM1]
 gi|124260218|gb|ABM95212.1| DNA polymerase III, epsilon subunit [Methylibium petroleiphilum
           PM1]
          Length = 234

 Score =  204 bits (520), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 83/238 (34%), Positives = 124/238 (52%), Gaps = 16/238 (6%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I  D ETTGL  +N DRIIEIG VE+L    +      +L P  R+N  +A+K+HG+T
Sbjct: 3   RQIFLDTETTGLSPENGDRIIEIGCVEMLSRRLSGNNRHFYLNPE-RRNHEDAVKIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124
           DEFL DKP F+ +  E  ++     AE I HNA FDVGF++AEL+R+ +         + 
Sbjct: 62  DEFLADKPKFAVVADELMEYLA--GAEIIIHNAAFDVGFLDAELKRLQRPRFAEQVGAVT 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           D+L++AR   P   N L++LCKR  +  + R+ HGALLD+ LL++VYI+M  G + +   
Sbjct: 120 DSLTMAREMFPGKSNSLDALCKRLEVDNASRTLHGALLDAGLLAEVYIRMTRGQNSLVID 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238
                          +   +L           + +E   H+  +  L    G   +W 
Sbjct: 180 AGAASGGAIAVADIDLRQFAL------PVIEPSDDERQAHEAVLAELDKVSGGKTLWR 231


>gi|319794398|ref|YP_004156038.1| DNA polymerase iii, epsilon subunit [Variovorax paradoxus EPS]
 gi|315596861|gb|ADU37927.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus EPS]
          Length = 240

 Score =  204 bits (520), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 87/231 (37%), Positives = 136/231 (58%), Gaps = 11/231 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTGL ++N DR+IE+G VEL     T     ++  P  R++  +ALK+HG+T
Sbjct: 3   RQIVLDTETTGLSAENGDRVIELGCVELFARKLTGNDLHIYFNPE-RESHEDALKVHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124
            +FL+DKP F+++ ++  ++   + AE I HNA FDVGF+N E +R    PL      + 
Sbjct: 62  TDFLRDKPKFATLANDIIEYL--RGAELIIHNAAFDVGFLNKEFERAGLPPLRTFVAEVT 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++A+  +P  RN L++LC R+G+  S+R+ HGA LD+ LL+DVYI +  G   +   
Sbjct: 120 DTLAMAKLVYPGKRNSLDALCDRFGVDRSNRTFHGAKLDAQLLADVYINLTRGQDALLID 179

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
             +NE      +  TV  I L + + P      ++EL  H+  +  L K++
Sbjct: 180 VASNEPA----QGTTVVAIDLSQFELP-VIAAGEQELAAHEAVLSQLDKSS 225


>gi|294649872|ref|ZP_06727272.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter haemolyticus ATCC 19194]
 gi|292824246|gb|EFF83049.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 452

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 129/229 (56%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P   K   +++ +HGIT
Sbjct: 225 RQLILDTETTGFYYQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVDVHGIT 282

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           DEFL+DKP ++ I    + +   + AE IAHNA FD+ F++ E +R+    L     + D
Sbjct: 283 DEFLQDKPKYAEIADALFAYL--KGAEIIAHNATFDMNFLDMEFKRVGLPLLSEVCEVTD 340

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +L+DVY+ M  G  Q++F  
Sbjct: 341 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGG--QVSFDI 398

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    + K T   + +           ++ EL+EH+  ++   + 
Sbjct: 399 DALSQHEQNQNKTTRQRVQID----LAVILPSEHELNEHETWVKQFEEK 443


>gi|298369358|ref|ZP_06980676.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298283361|gb|EFI24848.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 240

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 128/243 (52%), Gaps = 15/243 (6%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL ++  DR++E   +E+++   T+    +++ P  R    EA K+HG+T
Sbjct: 4   RQIILDTETTGLYAEGGDRLVEFAGLEMINRQMTDNNLHLYIHPE-RDMPEEAAKVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   ++AE I HNAKFD+GF+N E +R+    ++     
Sbjct: 63  IEVLEEKNAPPFAEVGRQIADFI--RDAELIIHNAKFDIGFLNMEFRRMGLPSIEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R  +  S R  HGAL+D  LL +VY+ M        
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRLSVDRSKRVLHGALIDCELLGEVYLAMTRQQ---- 176

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
           F     E    +E K  +  I+  KR       +   EEL  H++ +  LG+  +W +  
Sbjct: 177 FDLMGGEKEEDEEVKPVI--IAETKRPAHLKVIKANAEELAAHEQYLDGLGEACLWRKAE 234

Query: 242 SSN 244
           ++ 
Sbjct: 235 TAG 237


>gi|261377592|ref|ZP_05982165.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685]
 gi|269146340|gb|EEZ72758.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685]
          Length = 244

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 17/250 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MI+    R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA
Sbjct: 1   MIK----RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYIHPE-RDMPEEA 55

Query: 60  LKLHGITDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            ++HG+T E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    
Sbjct: 56  ARVHGLTIEVLEGKNAPPFARVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPT 113

Query: 118 LDP--SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++     I DTLS+AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M 
Sbjct: 114 VEELGCTITDTLSMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMT 173

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
                +       E        K V +  +    K    +  + EL  H++ +  LG++ 
Sbjct: 174 RQQFDL-----MGEAEEEGPAAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGESC 228

Query: 236 IWDRYISSNQ 245
           IW +    ++
Sbjct: 229 IWRKEAVPSE 238


>gi|145579465|pdb|2GUI|A Chain A, Structure And Function Of Cyclized Versions Of The
           Proofread Exonuclease Subunit Of E. Coli Dna Polymerase
           Iii
          Length = 194

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 76/183 (41%), Positives = 113/183 (61%), Gaps = 11/183 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 QIN 182
            + 
Sbjct: 187 SMA 189


>gi|160872285|ref|ZP_02062417.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli]
 gi|159121084|gb|EDP46422.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli]
          Length = 235

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 94/241 (39%), Positives = 132/241 (54%), Gaps = 16/241 (6%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I+ D ETTG D +   RIIEIG +EL+D   T R F  +L P GR + P A  +HG+
Sbjct: 1   MRQIILDTETTGRDINNGHRIIEIGCLELIDRQLTKRQFHCYLNP-GRDSDPGAFAIHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDPSR 122
           + EFL DKP F++I  E  +F   ++++ I HNA FD+ F+  EL   ++  K   D  +
Sbjct: 60  STEFLMDKPVFTTIADELLNFI--KDSQLIIHNAPFDLAFLEYELTLTKKKYKKMTDYCQ 117

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I+D+L +AR+ HP  RN L++LCKRY I  S R KHGALLD+ LL+ VY+ M  G + + 
Sbjct: 118 ILDSLLLARQLHPGQRNSLDALCKRYNIDHSKRDKHGALLDAELLARVYLAMTGGQTHLF 177

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIWDR 239
              K    +    +KKT    +L           T EEL  H   +    +L     W  
Sbjct: 178 NEPKPLTIQTHARQKKTTEATTL------PIIYATCEELTAHKNYLNHIYSLSGQCKWLH 231

Query: 240 Y 240
           Y
Sbjct: 232 Y 232


>gi|297250280|ref|ZP_06863987.2| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC
           43768]
 gi|296839296|gb|EFH23234.1| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC
           43768]
          Length = 253

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 13/238 (5%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+
Sbjct: 12  QRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGL 70

Query: 66  TDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--S 121
           T E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++    
Sbjct: 71  TIEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGC 128

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M     Q 
Sbjct: 129 TVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQF 186

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
           +      E+   K E K V +    +  K    R  + EL EH + +  LG++ IW +
Sbjct: 187 DLMGAVAEE---KMETKPVAHTETKRSGKLKVIRADENELAEHGQYLDGLGESCIWRK 241


>gi|261364618|ref|ZP_05977501.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996]
 gi|288567207|gb|EFC88767.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996]
          Length = 239

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 82/242 (33%), Positives = 126/242 (52%), Gaps = 12/242 (4%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL ++N DR++E   +E+++   T R   +++ P  R    EA ++HG+T
Sbjct: 3   RQIILDTETTGLYAENGDRLVEFAGLEMVNRQMTGRFLHLYVHPQ-RDMPEEAARVHGLT 61

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            + L  K+ P F+ +  E  +F   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 62  IDVLEEKNAPPFAKVGQEISEFI--RGAELIIHNAKFDVGFLNMEFRRMGLPSVEELGCE 119

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I DTL++AR   P  +  L++LC R  I  S R  HGAL+D  LL +VY+ M        
Sbjct: 120 ITDTLAMAREMFPGQKASLDALCNRLSIDRSKRVLHGALIDCELLGEVYLAMTRQQ---- 175

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
           F     E     +E K V      +       +   EEL+EH+K +  LG+  IW +  +
Sbjct: 176 FDLMGGESEEETKEDKPVIIAETKRSSSLKVIKANSEELEEHEKYLDALGEPCIWRQAAA 235

Query: 243 SN 244
             
Sbjct: 236 GE 237


>gi|319941413|ref|ZP_08015741.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B]
 gi|319805033|gb|EFW01863.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B]
          Length = 246

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 84/233 (36%), Positives = 129/233 (55%), Gaps = 19/233 (8%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDY--SKTNRT-FQVFLCPNGRKNSPEALKLH 63
           R I  D ETTGLD++N DRIIEIG V +       T+    Q+F+ P  R+   EA+ +H
Sbjct: 6   RLITLDTETTGLDAQNGDRIIEIGCVAIEGRMMRSTDEHHLQIFVNPE-REVPEEAVAIH 64

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSR 122
           GIT E+L+DKP F+ I  +F DF   + +  + HNA FD GF++ EL R  +  + D  +
Sbjct: 65  GITTEYLQDKPKFAEIADKFIDFV--KGSTLVIHNAAFDTGFLDMELGRCGRGKISDYCQ 122

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +IDT+ +A++  P     L+SLC+ Y I  S+R+ HGALLD+ LL++VY+ +  G   + 
Sbjct: 123 VIDTVKLAKKLLPGRAVSLDSLCRYYEIDNSNRTLHGALLDAELLAEVYLSLSRGQDTLT 182

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
                       E+   +P +     D  +  + + EEL EH++ +    K A
Sbjct: 183 L---------VNEDIDNLPPMPAF--DASIVIKASPEELAEHERILDIAEKKA 224


>gi|295698439|ref|YP_003603094.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola
           USDA]
 gi|291157346|gb|ADD79791.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola
           USDA]
          Length = 249

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 96/244 (39%), Positives = 135/244 (55%), Gaps = 17/244 (6%)

Query: 8   RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           RKI+ D ETTG+ S     +   IIEIGAVE+++   T   F V++ P  R   P+A ++
Sbjct: 7   RKIILDTETTGMSSSGHPYEGHNIIEIGAVEMINRELTGNLFHVYINPK-RSVDPKAFEI 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LD 119
           H I+D FLKDKP+FS I  +F DF   +N+E I HNA FDVGFIN EL RI         
Sbjct: 66  HKISDNFLKDKPTFSEIVDDFVDFI--RNSELIIHNASFDVGFINHELSRIEYSFCSIKK 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             RI DTL IAR   P  +N L++LC RY I  S RS H A+LD+ +LS++Y K+M GG 
Sbjct: 124 ICRITDTLKIARSLFPGKKNSLDALCDRYHIDRSKRSVHSAILDAKILSEIY-KLMTGG- 181

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI----QTLGKNA 235
           QI+F F  + ++      +        +  + L      +E   H+  +    + +GK  
Sbjct: 182 QISFNFDHDLEKKENFLNQYYFQRKRKRTRESLVIYANSKEQYCHEFILNTIEKKIGKKT 241

Query: 236 IWDR 239
           +W +
Sbjct: 242 LWRK 245


>gi|88606785|ref|YP_505310.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ]
 gi|88597848|gb|ABD43318.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ]
          Length = 244

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 85/234 (36%), Positives = 130/234 (55%), Gaps = 10/234 (4%)

Query: 6   KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K+R+IV D ETTGLD+   DRIIEIG VEL+DY  T R F  ++ P  R  S  A ++HG
Sbjct: 2   KVREIVLDTETTGLDADGGDRIIEIGCVELVDYVMTGRVFHKYIDPE-RDISVAATRVHG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT E L   P F+ +  E  DF   Q++  + HNA+FD+ F+  E++R++      + I+
Sbjct: 61  ITRESLIGMPKFAEVADELLDFL--QDSALVIHNARFDMRFLEVEIERLSNKRAITNTIV 118

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINF 183
           DTL +AR+K P     L++LCKR+ I+   R  HGAL D+ LL+ VY++++     ++ F
Sbjct: 119 DTLEMARKKFPGMPASLDALCKRFNISTQERKFHGALKDATLLARVYVELLEALQRRLVF 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
             + ++ +           +    R   L    + EE   H +T+  + KN IW
Sbjct: 179 SQEGDDSKQVSVIHDKAKRVVYPARTFTL----SSEEKRLHRQTVSKM-KNPIW 227


>gi|88608300|ref|YP_506355.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600469|gb|ABD45937.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 228

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 99/238 (41%), Positives = 143/238 (60%), Gaps = 17/238 (7%)

Query: 6   KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + RK++ D ETTGLD KN DR+IEIG VE++D+  T   F ++L P  R+ S EA ++HG
Sbjct: 3   QRRKVILDTETTGLDMKNGDRVIEIGCVEVVDFRITGEIFHIYLNPE-REISKEATRVHG 61

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRI 123
           IT E L D P F  I  +F  F +   +E +AHNA FD+ F+N+EL R   +  +    +
Sbjct: 62  ITFEQLADSPKFIDIADDFLKFIDS--SEIVAHNASFDIRFLNSELIRARQRRLIKLENV 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDTL++AR+  P S   L++LC+R+ I++  R  HGALLD+ LL+ VYI++   GSQ++ 
Sbjct: 120 IDTLAMARKIFPGSPASLDALCRRFRISLEQRELHGALLDAQLLARVYIEL-SKGSQVSM 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
            F   E      EKK        +R+K +   IT EE  EH + I+ L KN +WD  +
Sbjct: 179 SF--LEGSSVSSEKKM-----FKEREKLI---ITPEESLEHSELIRRL-KNPLWDEIL 225


>gi|325142705|gb|EGC65085.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           961-5945]
 gi|325198636|gb|ADY94092.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis G2136]
          Length = 244

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 127/243 (52%), Gaps = 13/243 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M      + 
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL- 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                 E    K E K V +    +  K    R  + EL EH + +  LG+  IW +   
Sbjct: 180 ----MGEAAEEKMETKPVVHTETKRSGKLKVIRADENELAEHGQYLDGLGEACIWRKEAV 235

Query: 243 SNQ 245
            ++
Sbjct: 236 PSE 238


>gi|24987377|pdb|1J53|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The
           Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 8.5
 gi|24987378|pdb|1J54|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The
           Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 5.8
 gi|119390109|pdb|2IDO|A Chain A, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading
           Complex
 gi|119390111|pdb|2IDO|C Chain C, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading
           Complex
          Length = 186

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 76/183 (41%), Positives = 113/183 (61%), Gaps = 11/183 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183

Query: 180 QIN 182
            + 
Sbjct: 184 SMA 186


>gi|197103471|ref|YP_002128848.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1]
 gi|196476891|gb|ACG76419.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1]
          Length = 234

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 83/237 (35%), Positives = 126/237 (53%), Gaps = 11/237 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+IV D ETTG D    DR++EI  +E+ D+  T R F  ++ P  R    EA K+HG++
Sbjct: 3   REIVLDTETTGFDPLTGDRLVEIACLEIEDFIPTGRHFHAYIDP-CRDMPAEAEKVHGLS 61

Query: 67  DEFLKDKPSFS--SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
             FL+ KP F    I   F DF    +A  +AHNA FD  F+N EL   ++  L   R I
Sbjct: 62  TAFLRGKPKFEAPEIVEAFLDFVA--DAPIVAHNAAFDRAFVNYELGLCSRAELPDHRWI 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++A+++ P   N L++LCKR+ I+++ R KHGAL+D+ LL+ VY+++  GG +    
Sbjct: 120 DTLALAKQRFPGMHNSLDALCKRFKISLAEREKHGALIDTKLLAAVYLEL-RGGRERRLE 178

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-AIWDRY 240
                              S   R +PL    + EE   H   I+ + K+  +W ++
Sbjct: 179 LT---SSAAVSAVHAATRNSYGARPRPLAPLSSDEERAVHAAFIREVVKSEELWGKF 232


>gi|325121399|gb|ADY80922.1| bifunctional protein dnaQ [Acinetobacter calcoaceticus PHEA-2]
          Length = 459

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 130/224 (58%), Gaps = 12/224 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P   K   ++  +HGI+
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQ--KPVGDSENIHGIS 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           D+FLKDKP ++ I    +D+   + AE IAHNA FD+ F++ E +R+    L     + D
Sbjct: 290 DDFLKDKPLYADIADTLFDYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +L+DVY+ M  G  Q++F  
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGG--QVSFDI 405

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
                    E  +   N S ++ D P     + EEL+ H+  ++
Sbjct: 406 DALSQ---SENSQQTTNRSRVQIDLP-VIYPSDEELNTHETWVK 445


>gi|218680719|ref|ZP_03528616.1| DNA polymerase III subunit epsilon [Rhizobium etli CIAT 894]
          Length = 186

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 93/182 (51%), Positives = 121/182 (66%), Gaps = 7/182 (3%)

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGITDEFLKDK  F+ +  E   FF   +A+WIAHNA FD+GFINAEL RI   P+ P R
Sbjct: 2   HGITDEFLKDKKPFAEVAEEILAFFG--DAKWIAHNATFDMGFINAELARIGLPPILPER 59

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++DTLS+ARRKHP   N L++LC+RYGI  SHR+KHGALLDS LL++VYI+M+ GG Q  
Sbjct: 60  VVDTLSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMI-GGRQAA 118

Query: 183 FGFKT----NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
           FG  T       R    E+  V   S+L+R +PL  R+++ E   H+  +  LG+  IW 
Sbjct: 119 FGLSTATSGQNGRGDMAEEDDVVIASVLERPRPLAPRLSQSEAQAHEALVAKLGEKGIWA 178

Query: 239 RY 240
           +Y
Sbjct: 179 KY 180


>gi|148555737|ref|YP_001263319.1| DNA polymerase III subunit epsilon [Sphingomonas wittichii RW1]
 gi|148500927|gb|ABQ69181.1| DNA polymerase III, epsilon subunit [Sphingomonas wittichii RW1]
          Length = 234

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 91/235 (38%), Positives = 134/235 (57%), Gaps = 11/235 (4%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+IVFD ETTGL+    DR++EIG VEL++  +T  +F  +  P  R    EA ++HG+
Sbjct: 1   MREIVFDTETTGLNPATGDRLVEIGCVELVNRVETGNSFHCYFNPQ-RSMPFEAEQVHGL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++ FL DKP F+    E   F    +A  +AHNA FD GF+N EL    +  +D  R++D
Sbjct: 60  SERFLSDKPLFADKVEELLAFIG--DAPLVAHNASFDFGFLNWELGACGRSIVDMGRMVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL IAR+ HP +++ L++LC RYGI  SHR KHGALLD+ LL+ +Y+++  GG QI  G 
Sbjct: 118 TLQIARKMHPGAKHSLDALCSRYGIDRSHRVKHGALLDAQLLAQLYVELT-GGRQI--GL 174

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTR---ITKEELDEHDKTIQTLGKNAIW 237
              E    +      P  ++         R    ++EEL+ H   ++ L    +W
Sbjct: 175 SMGEAVVEEVVVVATPRATVAASRTIRAIRPHFASEEELERHKAFVEKL-DAPLW 228


>gi|254670687|emb|CBA06809.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha153]
          Length = 244

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 126/243 (51%), Gaps = 13/243 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M      + 
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL- 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                 E    +   K V +  +    K    +  + EL  H+K +  LG+  IW +   
Sbjct: 180 ----MGEAEEEEPAAKPVASAEMKLGAKLKVIKADEAELAAHEKYLDGLGEACIWRKEAV 235

Query: 243 SNQ 245
            ++
Sbjct: 236 PSE 238


>gi|325134669|gb|EGC57309.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M13399]
          Length = 244

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 79/244 (32%), Positives = 128/244 (52%), Gaps = 13/244 (5%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+
Sbjct: 3   QRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGL 61

Query: 66  TDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--S 121
           T E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++    
Sbjct: 62  TIEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGC 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M     Q 
Sbjct: 120 TVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQF 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
           +      E+   K E K V +    +  K    R  + EL  H + +  LG+  IW +  
Sbjct: 178 DLMGAAAEE---KMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIWRKEA 234

Query: 242 SSNQ 245
             ++
Sbjct: 235 VPSE 238


>gi|194098390|ref|YP_002001448.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998794|ref|ZP_04718718.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           35/02]
 gi|240112723|ref|ZP_04727213.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           MS11]
 gi|240115471|ref|ZP_04729533.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID18]
 gi|240123321|ref|ZP_04736277.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID332]
 gi|240128023|ref|ZP_04740684.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493581|ref|ZP_05106752.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291]
 gi|260440719|ref|ZP_05794535.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           DGI2]
 gi|268594640|ref|ZP_06128807.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268598788|ref|ZP_06132955.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11]
 gi|268601147|ref|ZP_06135314.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18]
 gi|268681945|ref|ZP_06148807.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332]
 gi|268686413|ref|ZP_06153275.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035]
 gi|291044028|ref|ZP_06569744.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2]
 gi|293399220|ref|ZP_06643385.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62]
 gi|193933680|gb|ACF29504.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512621|gb|EEH61966.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291]
 gi|268548029|gb|EEZ43447.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268582919|gb|EEZ47595.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11]
 gi|268585278|gb|EEZ49954.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18]
 gi|268622229|gb|EEZ54629.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332]
 gi|268626697|gb|EEZ59097.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035]
 gi|291012491|gb|EFE04480.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2]
 gi|291610634|gb|EFF39744.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62]
 gi|317164085|gb|ADV07626.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 244

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 129/243 (53%), Gaps = 13/243 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            + L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M     Q +
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
              +T E+    +    V +  +    K    +  + EL  H++ +  LG+  IW +   
Sbjct: 179 LMGETEEEEPTAKP---VASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIWRKEAV 235

Query: 243 SNQ 245
            ++
Sbjct: 236 PSE 238


>gi|254673235|emb|CBA08224.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha275]
 gi|325144796|gb|EGC67087.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M01-240013]
          Length = 244

 Score =  201 bits (513), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 80/237 (33%), Positives = 127/237 (53%), Gaps = 13/237 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M     Q +
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239
                 E+   K E K V +    +  K    R  + EL EH + +  LG+  IW +
Sbjct: 179 LMGAAAEE---KMETKPVAHTETKRSGKLKVIRADENELAEHGRYLDGLGEACIWRK 232


>gi|299771048|ref|YP_003733074.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. DR1]
 gi|298701136|gb|ADI91701.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. DR1]
          Length = 458

 Score =  201 bits (513), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P   K   ++  +HGI+
Sbjct: 231 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQ--KPVGDSENIHGIS 288

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           D FLKDKP ++ I    +D+   + AE IAHNA FD+ F++ E +R     L     + D
Sbjct: 289 DNFLKDKPLYAEIADTLFDYL--KGAEIIAHNATFDMNFLDMEFRRAGLPALSEVCEVTD 346

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M  G  Q++F  
Sbjct: 347 TLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDI 404

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                    E  +   N + ++ D P     ++EEL+ H+  ++   K 
Sbjct: 405 DALSQ---SENSQNTTNKTRIQIDLP-VIYPSEEELNTHETWVKEFEKK 449


>gi|293608835|ref|ZP_06691138.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024]
 gi|292829408|gb|EFF87770.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024]
          Length = 459

 Score =  201 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 130/224 (58%), Gaps = 12/224 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P   K   ++  +HGI+
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQ--KPVGDSENIHGIS 289

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           D+FLKDKP ++ I    +D+   + AE IAHNA FD+ F++ E +R+    L     + D
Sbjct: 290 DDFLKDKPLYADIADTLFDYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +L+DVY+ M  G  Q++F  
Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGG--QVSFDI 405

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
                    E  +   N S ++ D P     + EEL+ H+  ++
Sbjct: 406 DALSQ---SENSQQTTNRSRVQIDLP-VIYPSDEELNIHETWVK 445


>gi|121635185|ref|YP_975430.1| DNA polymerase III, epsilon chain [Neisseria meningitidis FAM18]
 gi|120866891|emb|CAM10650.1| DNA polymerase III, epsilon chain [Neisseria meningitidis FAM18]
          Length = 253

 Score =  201 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 79/244 (32%), Positives = 128/244 (52%), Gaps = 13/244 (5%)

Query: 7   MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+
Sbjct: 12  QRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGL 70

Query: 66  TDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--S 121
           T E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++    
Sbjct: 71  TIEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGC 128

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M     Q 
Sbjct: 129 TVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQF 186

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241
           +      E+   K E K V +    +  K    R  + EL  H + +  LG+  IW +  
Sbjct: 187 DLMGAAAEE---KMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIWRKEA 243

Query: 242 SSNQ 245
             ++
Sbjct: 244 VPSE 247


>gi|59801359|ref|YP_208071.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA 1090]
 gi|240080918|ref|ZP_04725461.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA19]
 gi|268597034|ref|ZP_06131201.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
 gi|59718254|gb|AAW89659.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA 1090]
 gi|268550822|gb|EEZ45841.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
          Length = 244

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 129/243 (53%), Gaps = 13/243 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            + L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M     Q +
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
              +T E+    +    V +  +    K    +  + EL  H++ +  LG+  IW +   
Sbjct: 179 LMGETEEEEPTAKP---VASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIWRKEAV 235

Query: 243 SNQ 245
            ++
Sbjct: 236 PSE 238


>gi|118594819|ref|ZP_01552166.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Methylophilales bacterium HTCC2181]
 gi|118440597|gb|EAV47224.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Methylophilales bacterium HTCC2181]
          Length = 222

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 82/234 (35%), Positives = 127/234 (54%), Gaps = 15/234 (6%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGLD  +  R+IEI A+E  +   T+  F  ++ P  R+    A ++HGI
Sbjct: 1   MRQIFLDTETTGLDPNQGHRVIEIAAIEFNNRQATSNRFHFYVNPQ-REIDAAAQEVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T +FL DKP F  I ++F  F N   +E + HNA FDVGF+N EL +I  + L+     I
Sbjct: 60  TLDFLNDKPLFVDIAADFIAFIN--GSELVIHNAPFDVGFLNMELGKIGMEKLESYCDGI 117

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +D+L  A+   P  RN L++LC+ + +  S RS HGALLD+ LL +VYI+M  G      
Sbjct: 118 MDSLKFAKEIRPGQRNSLDALCRAFDVDNSTRSLHGALLDAQLLGEVYIQMTRGQEAFTI 177

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
            F         EE  +   +  +     + T+   +E++ H+  ++++ +   W
Sbjct: 178 NF---------EEDSSKAALQSVDHGDLIVTQPALDEVEAHNSYLRSINRTDGW 222


>gi|262375943|ref|ZP_06069174.1| ribonuclease HI [Acinetobacter lwoffii SH145]
 gi|262309037|gb|EEY90169.1| ribonuclease HI [Acinetobacter lwoffii SH145]
          Length = 458

 Score =  201 bits (512), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 78/235 (33%), Positives = 136/235 (57%), Gaps = 12/235 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ +  R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P  +    +++
Sbjct: 225 LQLHGPRQLILDTETTGFYYQDGDRIIEVGALEMINRKLTGSSIHIYINP--KTPVGDSV 282

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGITDEFL+DKP F  I    +D+     AE IAHNA FD+ F++ E +R     L  
Sbjct: 283 NVHGITDEFLQDKPLFEEISQVLFDYL--HGAEIIAHNATFDMNFLDMEFKRAGFKALSE 340

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              + DTL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M  G  
Sbjct: 341 VCDVTDTLALAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILSDVYLAMTGG-- 398

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
           Q++F           E++ +   ++ ++ + P+    +++EL EH+  ++   + 
Sbjct: 399 QVSFDIDALSQ---SEDQNSRSGMARVEIELPVIL-PSEQELQEHENWVKQFEEK 449


>gi|218768496|ref|YP_002343008.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491]
 gi|254805280|ref|YP_003083501.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           alpha14]
 gi|121052504|emb|CAM08843.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491]
 gi|254668822|emb|CBA06831.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           alpha14]
 gi|319410744|emb|CBY91127.1| DNA polymerase III epsilon subunit [Neisseria meningitidis WUE
           2594]
 gi|325127153|gb|EGC50103.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis N1568]
          Length = 244

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 13/243 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M      + 
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL- 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                 E    +   K V +  +    K    +  + EL  H + +  LG+  IW +   
Sbjct: 180 ----MGEAEEEEPAAKPVASAEMKLGAKLKVIKADEAELAAHGQYLDGLGEACIWRKEAV 235

Query: 243 SNQ 245
            ++
Sbjct: 236 PSE 238


>gi|325205739|gb|ADZ01192.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M04-240196]
          Length = 244

 Score =  201 bits (511), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 13/243 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M      + 
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL- 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                 E    +   K V +  +    K    +  + EL  H + +  LG+  IW +   
Sbjct: 180 ----MGEAEEEEPAAKPVASAEMKLGAKLKVIKADEAELAAHGQYLDGLGEACIWRKEAV 235

Query: 243 SNQ 245
            ++
Sbjct: 236 PSE 238


>gi|15677367|ref|NP_274522.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|7226758|gb|AAF41870.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|261392239|emb|CAX49759.1| DNA polymerase III epsilon subunit [Neisseria meningitidis 8013]
 gi|308389659|gb|ADO31979.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha710]
 gi|316986028|gb|EFV64965.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76]
 gi|325130586|gb|EGC53333.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           OX99.30304]
 gi|325136592|gb|EGC59193.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M0579]
 gi|325140658|gb|EGC63175.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis CU385]
 gi|325199883|gb|ADY95338.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76]
 gi|325201794|gb|ADY97248.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M01-240149]
 gi|325208453|gb|ADZ03905.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 244

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 128/243 (52%), Gaps = 13/243 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            + L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IQVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M     Q +
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                 E+   K E K V +    +  K    R  + EL  H + +  LG+  IW +   
Sbjct: 179 LMGAAAEE---KMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIWRKEAV 235

Query: 243 SNQ 245
            ++
Sbjct: 236 PSE 238


>gi|304387081|ref|ZP_07369332.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           meningitidis ATCC 13091]
 gi|304338830|gb|EFM04933.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           meningitidis ATCC 13091]
 gi|325132669|gb|EGC55354.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M6190]
 gi|325138557|gb|EGC61120.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           ES14902]
 gi|325204491|gb|ADY99944.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M01-240355]
          Length = 244

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 13/243 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            + L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IQVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M     Q +
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                 E+   K E K V +    +  K    R  + EL EH + +  LG+  IW +   
Sbjct: 179 LMGAAAEE---KMETKPVVHTETKRSGKLKVIRADENELAEHGQYLDGLGEACIWRKEAV 235

Query: 243 SNQ 245
            ++
Sbjct: 236 PSE 238


>gi|330813374|ref|YP_004357613.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486469|gb|AEA80874.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 225

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 85/223 (38%), Positives = 130/223 (58%), Gaps = 8/223 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M +I+ D ETTGL    D+IIEI  +EL +   T   F VF+ PN    S  A + HGI+
Sbjct: 1   MLEIILDTETTGLSFNTDKIIEIACIELENQIPTKNKFHVFINPN-MDISDGAYQTHGIS 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +FL+DKP F  I  EF +F   ++++ + HNA FD+ F+N ELQ ++ +PL   R++DT
Sbjct: 60  RDFLRDKPVFKDIAKEFLNFI--KDSKLVIHNADFDLAFLNKELQELDLEPLSKDRVVDT 117

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L +AR+K P S+  L++LCKR+ I  S R KH AL+D +LL++VYI+++     +     
Sbjct: 118 LFLARQKFPGSQASLDALCKRFKINTSEREKHSALVDCNLLTEVYIELLEKKEPLLDLQP 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
           +  D    +  KT+         K +   IT+EE + H K ++
Sbjct: 178 SQADINDLDSSKTINT-----NRKKIIVPITEEERNLHRKFLK 215


>gi|262279776|ref|ZP_06057561.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202]
 gi|262260127|gb|EEY78860.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202]
          Length = 458

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG   +  DRIIE+GA+E+++   T  +  +++ P   K   ++  +HGI+
Sbjct: 231 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQ--KPVGDSENIHGIS 288

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125
           D FLKDKP ++ I    +D+   + AE IAHNA FD+ F++ E +R     L     + D
Sbjct: 289 DNFLKDKPLYADIADTLFDYL--KGAEIIAHNATFDMNFLDMEFRRAGLPALSEVCEVTD 346

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A+ KHP  +N L++L +RY I    R+ HGALLD+ +LSDVY+ M  G    +   
Sbjct: 347 TLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDIDA 406

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
            +  +       KT   I L           ++EEL+ H+  ++   K 
Sbjct: 407 LSQSENSLNTANKTRVQIEL------PVILPSEEELNTHETWVKEFEKK 449


>gi|240014290|ref|ZP_04721203.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           DGI18]
 gi|240117765|ref|ZP_04731827.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID1]
 gi|240121853|ref|ZP_04734815.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID24-1]
 gi|240125570|ref|ZP_04738456.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           SK-92-679]
 gi|268603465|ref|ZP_06137632.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1]
 gi|268684159|ref|ZP_06151021.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679]
 gi|268587596|gb|EEZ52272.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1]
 gi|268624443|gb|EEZ56843.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679]
          Length = 244

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 126/243 (51%), Gaps = 13/243 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            + L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M      + 
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL- 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                 E    +   K V +  +    K    +  + EL  H++ +  LG+  IW +   
Sbjct: 180 ----MGETEEEETTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIWRKEAV 235

Query: 243 SNQ 245
            ++
Sbjct: 236 PSE 238


>gi|289809670|ref|ZP_06540299.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 187

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 76/181 (41%), Positives = 111/181 (61%), Gaps = 11/181 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ +L++VY+ M  G +
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186

Query: 180 Q 180
            
Sbjct: 187 S 187


>gi|330719972|gb|EGG98425.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC2047]
          Length = 212

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 78/211 (36%), Positives = 117/211 (55%), Gaps = 12/211 (5%)

Query: 35  LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW 94
           +D   T R +  ++ P  R     A ++HGIT +FL DKP F+ I +EF  F   + AE 
Sbjct: 4   IDRKLTGRHYHQYINPE-RDIDDGAAEVHGITSDFLADKPVFADIANEFLAFI--KGAEL 60

Query: 95  IAHNAKFDVGFINAELQRINKDPLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGIT 151
           + HNA FDVGFI+ E + +N+          IIDT+ +AR+KHP  +N+L++LCKRYG+ 
Sbjct: 61  VIHNAPFDVGFIDHEFRLLNQGHPKTSEICDIIDTIVMARKKHPGQKNNLDALCKRYGVD 120

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
            S R  HGALLD+ +L+DVY+ M  G + +  G    +++   E  + V N    +R   
Sbjct: 121 NSARDLHGALLDAEILADVYLLMTGGQTALMLG---ADEQAGGEAGQMVINRVSAERRPL 177

Query: 212 LFTRITKEELDEHDKTIQTLGK---NAIWDR 239
              R + EEL  H   +Q L K   + +W +
Sbjct: 178 KVIRASDEELAAHHDNLQQLEKVSGDCLWLK 208


>gi|240016725|ref|ZP_04723265.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA6140]
          Length = 244

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 126/243 (51%), Gaps = 13/243 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA ++HG+T
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            + L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++     
Sbjct: 63  IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCT 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + DTL+IAR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M      + 
Sbjct: 121 VTDTLAIAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL- 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                 E    +   K V +  +    K    +  + EL  H++ +  LG+  IW +   
Sbjct: 180 ----MGETEEEETTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIWRKEAV 235

Query: 243 SNQ 245
            ++
Sbjct: 236 PSE 238


>gi|329118044|ref|ZP_08246757.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465932|gb|EGF12204.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 247

 Score =  197 bits (502), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 77/241 (31%), Positives = 124/241 (51%), Gaps = 14/241 (5%)

Query: 6   KMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R+I+ D ETTGL   + DRI+E   +E+     T RT  +++ P+ R    EA  +HG
Sbjct: 3   RERQIILDTETTGLYSDRGDRILEFAGIEMRKRRLTERTLHLYIHPD-RDIPEEAAAVHG 61

Query: 65  ITDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           IT + L  K+ P F+++  E  DF   + AE I HNA+FDVGF++ E +R+    ++   
Sbjct: 62  ITLDTLAEKNAPKFAAVGQEIADFL--RGAELIIHNARFDVGFLDMEFERMGLPTIEELG 119

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             + DTL++AR K+P  +  L++LC R  I  S R  HGAL+D  LL++VY+ M      
Sbjct: 120 CEVTDTLAMAREKYPGQKASLDALCGRLDIDRSKRVYHGALIDCELLAEVYLAMTREQFD 179

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAI 236
           +  G   N      +  +T     L++  +    +    EL  H   +  +    G + +
Sbjct: 180 LVGGSDDNNGDTPAQNTRTA--APLVRTGRLKVIKADATELAAHAAILDEINQATGGHCL 237

Query: 237 W 237
           W
Sbjct: 238 W 238


>gi|294788746|ref|ZP_06753987.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC
           29453]
 gi|294483228|gb|EFG30914.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC
           29453]
          Length = 272

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 80/238 (33%), Positives = 123/238 (51%), Gaps = 10/238 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           MI     R+I+ D ETTGL +      DR+IE   +E+++   T R   + + P  R+ S
Sbjct: 1   MILDKDKRQIILDTETTGLYANAAENPDRLIEFAGLEMMNRQLTGRNLHLLIHPQ-REIS 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            EA  +H IT   L DKP F+ +  + +DF   + AE I HNAKFDVGF+NAE  R+   
Sbjct: 60  EEATAVHNITLSQLVDKPIFAQVAQQIFDFI--KGAELIIHNAKFDVGFLNAEFARVGLP 117

Query: 117 PLDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++    I DTL +A+  +   +N L++LC R G+  S R  HGAL+D  LLS+VY+ M 
Sbjct: 118 NVETICEITDTLEMAKNLYHGQKNSLDALCNRLGVDRSKRVFHGALIDCELLSEVYLGMT 177

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
            G   +   ++  ++    E  + V   +  +          ++EL  H+  +  L K
Sbjct: 178 RGQFSLMADWEDEDEN--SEINQIVVQHTFQRTGSLKVVLANEDELAAHEAILADLDK 233


>gi|125973511|ref|YP_001037421.1| DNA polymerase III PolC [Clostridium thermocellum ATCC 27405]
 gi|125713736|gb|ABN52228.1| DNA polymerase III catalytic subunit, PolC type [Clostridium
           thermocellum ATCC 27405]
          Length = 1442

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 98/176 (55%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL +  D+I EIGAV++ +    + TF  F+ P         +KL GITD+
Sbjct: 429 FVVFDIETTGLSADKDKITEIGAVKIKEGKIVD-TFSTFVNPEI-PIPEFVVKLTGITDD 486

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +  EF +F     +  +AHNA FD GFI    + IN++  +P  +IDTL 
Sbjct: 487 MVSDAPTIDKVLPEFLEFVGT--SPLVAHNAVFDTGFIRHNARLINRNVDNP--VIDTLE 542

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++R+  P   ++ L+ + K  G+++ +   H AL D+    +++IK +   ++ N 
Sbjct: 543 LSRQMFPELKKHKLDVVAKHLGVSLENH--HRALDDAKACGEIFIKCLEILAEKNV 596


>gi|256003329|ref|ZP_05428320.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
           2360]
 gi|281417714|ref|ZP_06248734.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|255992619|gb|EEU02710.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
           2360]
 gi|281409116|gb|EFB39374.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|316940249|gb|ADU74283.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
           1313]
          Length = 1442

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 98/176 (55%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL +  D+I EIGAV++ +    + TF  F+ P         +KL GITD+
Sbjct: 429 FVVFDIETTGLSADKDKITEIGAVKIKEGKIVD-TFSTFVNPEI-PIPEFVVKLTGITDD 486

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +  EF +F     +  +AHNA FD GFI    + IN++  +P  +IDTL 
Sbjct: 487 MVSDAPTIDKVLPEFLEFVGT--SPLVAHNAVFDTGFIRHNARLINRNVDNP--VIDTLE 542

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++R+  P   ++ L+ + K  G+++ +   H AL D+    +++IK +   ++ N 
Sbjct: 543 LSRQMFPELKKHKLDVVAKHLGVSLENH--HRALDDAKACGEIFIKCLEILAEKNV 596


>gi|332978349|gb|EGK15074.1| DNA polymerase III, epsilon subunit [Psychrobacter sp. 1501(2011)]
          Length = 577

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 121/229 (52%), Gaps = 14/229 (6%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTGLD+ K DR+IE+G +EL++   T     V++ P  R    E +++HGIT
Sbjct: 306 RQLIMDTETTGLDALKGDRVIEVGIIELVNRKFTGEKLHVYINPE-RGMDDEVIRVHGIT 364

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIID 125
           + FL DKP F  +    ++F     AE IAHNA FD+ F++ E  R+   D  +   + D
Sbjct: 365 EAFLADKPKFKEVAKPLYEFML--GAELIAHNAPFDMSFLSMEFDRVGLSDFAEKVTVTD 422

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L +A++++P  +N L++L +R  +    R+ HGALLDS +L++VY+ M  G   +    
Sbjct: 423 SLVMAKQQYPGQKNTLDALVRRLNVGKMDRTFHGALLDSEILAEVYLAMTGGQVALAIDE 482

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
            T  +        +     +LK + P         LD H   +  L K 
Sbjct: 483 DTQSEGEGSHADFSHLASQILKANTP---------LDNHVSWVSKLLKK 522


>gi|220927905|ref|YP_002504814.1| DNA polymerase III PolC [Clostridium cellulolyticum H10]
 gi|219998233|gb|ACL74834.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10]
          Length = 1433

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL+ + DRI EIGAV++ +    +R F  F+ P G       +KL GIT++
Sbjct: 422 FVVFDIETTGLNPQQDRITEIGAVKVRNGQIVDR-FSAFVNP-GVSIPSFIVKLTGITND 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    + +EF +F   Q +  +AHNA FDVGFI    + I +   +P   +DTL 
Sbjct: 480 MVKDAPPIEQVLNEFMEFI--QGSVLVAHNANFDVGFIKHNAKIIGEKVKNP--YLDTLE 535

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + R+  P   R  LN + K   I + +   H A+ DS   + ++I  +
Sbjct: 536 LCRKMFPELGRYKLNIVAKHLKIELENH--HRAVDDSMATAKIFIHCL 581


>gi|257483794|ref|ZP_05637835.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 178

 Score =  195 bits (495), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 85/181 (46%), Positives = 111/181 (61%), Gaps = 9/181 (4%)

Query: 1   MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  +N   R IV D ETTG+      RIIEIG VEL+    T R F V+L P+ R++   
Sbjct: 1   MALQNLDNRSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---- 114
           A+ +HGIT+EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E   +     
Sbjct: 60  AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDR 117

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D      I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M
Sbjct: 118 ADITQHCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177

Query: 175 M 175
            
Sbjct: 178 T 178


>gi|21672521|ref|NP_660588.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|21623143|gb|AAM67799.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 234

 Score =  195 bits (495), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 96/241 (39%), Positives = 135/241 (56%), Gaps = 15/241 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           +  N  R IV D ETTG++S        RIIEIGA+E+++   T + F  ++ PN R   
Sbjct: 1   MMNNTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN-RLIE 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK- 115
            +A K+HGITD+FL DKPSF  I  +F+++   +N+E I HNA FDVGFIN E   + K 
Sbjct: 60  SDASKIHGITDDFLSDKPSFKDIAKDFFNYI--KNSELIIHNASFDVGFINQEFSMLTKK 117

Query: 116 --DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             D  +   IIDTL IAR+  P  +N L++LC RY I  SHR  HGA+LD+ LL  +Y+ 
Sbjct: 118 IQDISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGKLYLL 177

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           M  G   I F      +R F+  KK++      K       +  K EL  H++ ++ L +
Sbjct: 178 MTSGQESIIFNKNIQNERNFRYIKKSITK----KHRFLKIIKANKTELKLHNEYLKFLKE 233

Query: 234 N 234
            
Sbjct: 234 K 234


>gi|167010822|ref|ZP_02275753.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 230

 Score =  194 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 90/239 (37%), Positives = 127/239 (53%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  K    AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YKVEAGALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN EL      +      + +
Sbjct: 62  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G  Q 
Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237
           N   +T +          V  ++L   +  +       ++  H   +     L ++A W
Sbjct: 178 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISAHHSYLSNLLKLEEDAKW 230


>gi|257454857|ref|ZP_05620108.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
           epsilon subunit [Enhydrobacter aerosaccus SK60]
 gi|257447790|gb|EEV22782.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
           epsilon subunit [Enhydrobacter aerosaccus SK60]
          Length = 595

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 12/229 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG +++N DRIIE+G VE+++   T     V++ P   +   E +++HGI 
Sbjct: 366 RQLILDTETTGFEAQNGDRIIEVGIVEMINRRFTGEKLHVYINPKI-EMGEEVIRVHGIH 424

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125
           + FL D P F  +    +DF   Q AE IAHNA FD+ F+ AE  R+    ++ +  + D
Sbjct: 425 NAFLNDMPVFEQVGEAIYDFL--QGAELIAHNAGFDMSFLQAEFARLGLPDINQTVTVTD 482

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L+IA+R     RN L++L KR  +    R+ HGALLD+ +L++VY+ M  G  Q+    
Sbjct: 483 SLAIAKRMFAGQRNTLDALVKRLNVGKQDRTFHGALLDAEILAEVYLAMTGG--QVALAI 540

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
                       +     + +KR    F   ++ E   H + +  L  N
Sbjct: 541 DDEVGGGVGGATEHQRFSTTIKR----FLASSEAE-QAHLEWLNALKNN 584


>gi|187931822|ref|YP_001891807.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712731|gb|ACD31028.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 230

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 88/239 (36%), Positives = 126/239 (52%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  +    AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YEVEAGALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN E       +      + +
Sbjct: 62  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWEFSLLKNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G  Q 
Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237
           N   +T +          V  ++L   +  +       ++  H   +     L ++A W
Sbjct: 178 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISAHHSYLSNLLKLEEDAKW 230


>gi|89256347|ref|YP_513709.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314792|ref|YP_763515.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|254367683|ref|ZP_04983704.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|254369321|ref|ZP_04985333.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|89144178|emb|CAJ79442.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129691|gb|ABI82878.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253494|gb|EBA52588.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|157122271|gb|EDO66411.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 238

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 90/239 (37%), Positives = 127/239 (53%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  K    AL +HG+T
Sbjct: 11  RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YKVEAGALAIHGLT 69

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN EL      +      + +
Sbjct: 70  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 127

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G  Q 
Sbjct: 128 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 185

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237
           N   +T +          V  ++L   +  +       ++  H   +     L ++A W
Sbjct: 186 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISAHHSYLSNLLKLEEDAKW 238


>gi|56707679|ref|YP_169575.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670150|ref|YP_666707.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134301975|ref|YP_001121944.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|224456748|ref|ZP_03665221.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370187|ref|ZP_04986193.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874491|ref|ZP_05247201.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604171|emb|CAG45181.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320483|emb|CAL08564.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134049752|gb|ABO46823.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151568431|gb|EDN34085.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840490|gb|EET18926.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158843|gb|ADA78234.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 230

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 89/239 (37%), Positives = 127/239 (53%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  +    AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YEVEAGALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN EL      +      + +
Sbjct: 62  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G  Q 
Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237
           N   +T +          V  ++L   +  +       ++  H   +     L ++A W
Sbjct: 178 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISAHHSYLSNLLKLEEDAKW 230


>gi|2833216|sp|Q08880|DPO3E_BUCAP RecName: Full=DNA polymerase III subunit epsilon
 gi|1794288|gb|AAC44791.1| DNA polymerase III epsilon chain [Buchnera aphidicola]
          Length = 233

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 96/238 (40%), Positives = 134/238 (56%), Gaps = 15/238 (6%)

Query: 5   NKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R IV D ETTG++S        RIIEIGA+E+++   T + F  ++ PN R    +A
Sbjct: 3   NTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN-RLIESDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---D 116
            K+HGITD+FL DKPSF  I  +F+++   +N+E I HNA FDVGFIN E   + K   D
Sbjct: 62  SKIHGITDDFLSDKPSFKDIAKDFFNYI--KNSELIIHNASFDVGFINQEFSMLTKKIQD 119

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             +   IIDTL IAR+  P  +N L++LC RY I  SHR  HGA+LD+ LL  +Y+ M  
Sbjct: 120 ISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGKLYLLMTS 179

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
           G   I F      +R F+  KK++      K       +  K EL  H++ ++ L + 
Sbjct: 180 GQESIIFNKNIQNERNFRYIKKSITK----KHRFLKIIKANKTELKLHNEYLKFLKEK 233


>gi|296113099|ref|YP_003627037.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
 gi|295920793|gb|ADG61144.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
 gi|326560092|gb|EGE10482.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 46P47B1]
 gi|326560475|gb|EGE10857.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 7169]
 gi|326561678|gb|EGE12015.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 103P14B1]
 gi|326564194|gb|EGE14430.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 12P80B1]
 gi|326565793|gb|EGE15955.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC1]
 gi|326570446|gb|EGE20486.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC8]
 gi|326571129|gb|EGE21153.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC7]
 gi|326573423|gb|EGE23391.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 101P30B1]
 gi|326575681|gb|EGE25604.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis CO72]
 gi|326577147|gb|EGE27041.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis O35E]
          Length = 432

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 120/233 (51%), Gaps = 19/233 (8%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTG + +  DRI+E+G VEL+    T     V++ P  +      +++HGI+
Sbjct: 212 RQLIMDTETTGFNEAGGDRIVEVGIVELVGRKFTGNILHVYINPE-KHMDDAVIQVHGIS 270

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125
           + F+ DKP F+ +  + ++F     +E IAHNA FD+ F+N E  R        S ++ D
Sbjct: 271 NAFVADKPKFAEVAQQIYEFMA--GSEVIAHNAAFDMKFLNMEFNRAGLSNFANSVKVTD 328

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++A++ +P  +N L++L KR G+    R+ HGALLDS +L++VY+ M  G        
Sbjct: 329 TLALAKQMYPGQKNSLDALVKRLGVGQKDRTFHGALLDSEILAEVYLAMTGGQ----IAM 384

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
             ++D       ++  +             +++ +++           +A+W 
Sbjct: 385 AIDDDNTGGSNTRSTGSAFYDLSQYADSLALSESDIEA----------DALWR 427


>gi|62261930|gb|AAX78030.1| unknown protein [synthetic construct]
          Length = 265

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 91/249 (36%), Positives = 131/249 (52%), Gaps = 22/249 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M+  +  R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  +    A
Sbjct: 24  MLEMS--RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YEVEAGA 80

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RIN 114
           L +HG+T+EFL DKP F     E  +F   + AE I HNA FDV FIN EL      +  
Sbjct: 81  LAIHGLTNEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYG 138

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               + ++I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M
Sbjct: 139 TLEQNVAKIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAM 198

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TL 231
             G  Q N   +T +          V  ++L   +  +       ++  H   +     L
Sbjct: 199 TGG--QTNLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISAHHSYLSNLLKL 250

Query: 232 GKNAIWDRY 240
            ++A W  Y
Sbjct: 251 EEDAKWYPY 259


>gi|332184121|gb|AEE26375.1| DNA polymerase III epsilon subunit [Francisella cf. novicida 3523]
          Length = 230

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T  T   +  PN  +    AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRVTGNTLHFYCNPN-YEVEAGALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121
           +EFL DKP F     E  DF   + AE I HNA FDV FIN EL      +      + +
Sbjct: 62  NEFLADKPLFEDKVDEMIDFL--KGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G  Q 
Sbjct: 120 KIVDSLELARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237
           N   +T +          +  ++L K D  +       ++  H   +     L ++A W
Sbjct: 178 NLSLQTAKTISKNSIDIDINKLNLRKADDSI------SDISVHHNYLSNLLKLEEDAKW 230


>gi|54114497|gb|AAV29882.1| NT02FT1179 [synthetic construct]
          Length = 230

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 89/239 (37%), Positives = 126/239 (52%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  +    AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YEVEAGALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN EL      +      + +
Sbjct: 62  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G  Q 
Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237
           N   +T +          V  ++L   +  +       ++  H   +     L + A W
Sbjct: 178 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISAHHSYLSNLLKLEEGAKW 230


>gi|169656602|ref|YP_001428489.2| DNA polymerase III, subunit epsilon [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290954177|ref|ZP_06558798.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312420|ref|ZP_06803198.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|164551670|gb|ABU61533.2| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 238

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 89/232 (38%), Positives = 124/232 (53%), Gaps = 17/232 (7%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  K    AL +HG+T
Sbjct: 11  RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YKVEAGALAIHGLT 69

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN EL      +      + +
Sbjct: 70  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 127

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G  Q 
Sbjct: 128 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 185

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           N   +T +          V  ++L   +  +       ++  H   +  L K
Sbjct: 186 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISAHHSYLSNLLK 231


>gi|71281267|ref|YP_268980.1| DNA polymerase III, epsilon subunit [Colwellia psychrerythraea 34H]
 gi|71147007|gb|AAZ27480.1| DNA polymerase III, epsilon subunit [Colwellia psychrerythraea 34H]
          Length = 256

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 77/250 (30%), Positives = 124/250 (49%), Gaps = 27/250 (10%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCP-----NGRKNSPEALK 61
           R I+ D ETTG++ +   RI+EIG VE+++   T RT+  ++ P        +   E + 
Sbjct: 15  RLIILDTETTGINPREGHRIVEIGCVEMINRQLTGRTYHAYIKPLDQRGQVFQMEQEVIN 74

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN------- 114
           +HG+T+EFL DKP FS +  EF DF   + AE + HN+KFDVGF++ E    N       
Sbjct: 75  IHGLTNEFLADKPIFSQVVHEFIDFI--RGAELVIHNSKFDVGFMDHEFSLFNSMGRSQD 132

Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVY 171
                 D   I DTL +++ +  S +  L+ L + Y +  +  R+ HGAL+D+ LL+ VY
Sbjct: 133 KVPMTEDICTITDTLKVSKDELGSPK-TLDYLARFYRVDKLVDRTYHGALIDAQLLAYVY 191

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           I+M    S  N       +      ++         R+K      + +EL  H + +  +
Sbjct: 192 IEMTRKQSSFNLSSGDGTNADANAIRRVSST-----RNKLKVIAASADELVAHTERVAVI 246

Query: 232 GK---NAIWD 238
           GK   + +W 
Sbjct: 247 GKKGGDPLWK 256


>gi|254372921|ref|ZP_04988410.1| hypothetical protein FTCG_00492 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570648|gb|EDN36302.1| hypothetical protein FTCG_00492 [Francisella novicida GA99-3549]
 gi|332678259|gb|AEE87388.1| DNA polymerase III epsilon subunit [Francisella cf. novicida Fx1]
          Length = 230

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 91/239 (38%), Positives = 128/239 (53%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T  T   +  PN  +    AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNTLHFYCNPN-YEVEAGALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-----QRINKDPLDPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN EL      +      + +
Sbjct: 62  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELGLLRNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           RI+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G  Q 
Sbjct: 120 RIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237
           N   +T +          V  ++L   +  +       ++  H   +     L ++A W
Sbjct: 178 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISVHHSYLSNLLKLEEDAKW 230


>gi|254374374|ref|ZP_04989856.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548]
 gi|151572094|gb|EDN37748.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548]
          Length = 238

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 91/239 (38%), Positives = 128/239 (53%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T  T   +  PN  +    AL +HG+T
Sbjct: 11  RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNTLHFYCNPN-YEVEAGALAIHGLT 69

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-----QRINKDPLDPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN EL      +      + +
Sbjct: 70  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELGLLRNNKYGTLEQNVA 127

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           RI+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G  Q 
Sbjct: 128 RIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 185

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237
           N   +T +          V  ++L   +  +       ++  H   +     L ++A W
Sbjct: 186 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISVHHSYLSNLLKLEEDAKW 238


>gi|296132882|ref|YP_003640129.1| DNA polymerase III, alpha subunit [Thermincola sp. JR]
 gi|296031460|gb|ADG82228.1| DNA polymerase III, alpha subunit [Thermincola potens JR]
          Length = 1442

 Score =  191 bits (486), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 96/176 (54%), Gaps = 8/176 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG     D IIEIGAV++      +R F  F+CP GR+  PE  +L GIT+ 
Sbjct: 430 YVVFDLETTGFSPVTDEIIEIGAVKIHGNKILDR-FSAFVCP-GREIPPEVQELTGITNN 487

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P  + +  +F DF    +A  +AHNA+FD GF+ A +++I    L    ++DTL 
Sbjct: 488 MVSDAPPIAEVLPKFIDFVG--DAVLVAHNAQFDTGFLRANMEKILNRTLA-QPVLDTLG 544

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +AR   P    + L +L K + + + +   H A+ D+   + + IK +   ++ N 
Sbjct: 545 LARGLFPDMKNHKLKTLAKEFNVKLENH--HRAVDDAEATAQLLIKFLERLAEHNI 598


>gi|326204061|ref|ZP_08193922.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
           2782]
 gi|325985828|gb|EGD46663.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
           2782]
          Length = 1433

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 91/168 (54%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL+   D+I EIGAV++ +    +R F  F+ P G       +KL GITD+
Sbjct: 422 FVVFDIETTGLNPHQDKITEIGAVKVRNGQIVDR-FSAFVNP-GVSIPSFIVKLTGITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    + +EF +F   Q +  +AHNA FDVGFI    + + +   +P   IDTL 
Sbjct: 480 MVKDAPPVEQVLNEFMEFI--QGSVLVAHNANFDVGFIKQNAKLMGEKVKNP--YIDTLE 535

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + R+  P   R  LN + K   I + +   H A+ DS   + +++  +
Sbjct: 536 LCRKMFPELGRYKLNIVAKHLKIELENH--HRAVDDSMATAKIFMHCI 581


>gi|118497560|ref|YP_898610.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           novicida U112]
 gi|195536256|ref|ZP_03079263.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|118423466|gb|ABK89856.1| DNA polymerase III, epsilon subunit [Francisella novicida U112]
 gi|194372733|gb|EDX27444.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           novicida FTE]
          Length = 230

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 89/239 (37%), Positives = 127/239 (53%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  +    AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YEVEAGALAIHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN EL      +      + +
Sbjct: 62  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G  Q 
Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237
           N   +T +          V  ++L   +  +       ++  H   +     L ++A W
Sbjct: 178 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISVHHSYLSNLLKLEEDAKW 230


>gi|241668417|ref|ZP_04755995.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876950|ref|ZP_05249660.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842971|gb|EET21385.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 230

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  +    AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRKVTGNNLHFYCNPN-YEVEAGALAVHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-----QRINKDPLDPS 121
           +EFL DKPSF     +  DF   + AE I HNA FDV FIN EL      +        +
Sbjct: 62  NEFLADKPSFEENVDQMIDFL--RGAEIIIHNAAFDVPFINWELGLLKNNKYGTLEQHVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G  Q 
Sbjct: 120 KIVDSLELARKKHPLQKNNLDALCKRYHIRNDHRTFHGALLDSELLADVYLAMTGG--QT 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAIW 237
           N   +T ++            + L   ++ +        + EHDK +     L ++A W
Sbjct: 178 NLVLQTTKNASKDTIDIDFDKLKLRSANETIIN------ISEHDKYLCNILKLEESAKW 230


>gi|167770615|ref|ZP_02442668.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM
           17241]
 gi|167667210|gb|EDS11340.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM
           17241]
          Length = 1445

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 7/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGL +  +RI EIGAV+L +    +R F  F+ P  R   P+  +L GITD+ 
Sbjct: 427 IVFDLETTGLSAATERITEIGAVKLRNGEIVDR-FNTFVNPE-RSIPPKITELTGITDDD 484

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P       +F+ F    +A  IAHNA FD  F+    +R   +       IDT+ +
Sbjct: 485 VRGAPLEGEALRQFYAFCGGSSAVLIAHNAPFDTSFLRQCARRCGMEY--NFTAIDTVVL 542

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +R   P   ++ L+ + K  G  +   + H A  D+ +L+ +YI+MM 
Sbjct: 543 SRSLFPELKKHKLDIVAKHLG--LGEFNHHRACDDAEMLARIYIRMME 588


>gi|208779358|ref|ZP_03246704.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG]
 gi|208745158|gb|EDZ91456.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG]
          Length = 238

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 89/239 (37%), Positives = 127/239 (53%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  +    AL +HG+T
Sbjct: 11  RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YEVEAGALAIHGLT 69

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121
           +EFL DKP F     E  +F   + AE I HNA FDV FIN EL      +      + +
Sbjct: 70  NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 127

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G  Q 
Sbjct: 128 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRAFHGALLDSELLADVYLAMTGG--QT 185

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237
           N   +T +          V  ++L   +  +       ++  H   +     L ++A W
Sbjct: 186 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISVHHSYLSNLLKLEEDAKW 238


>gi|294670031|ref|ZP_06734988.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308152|gb|EFE49395.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 244

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 113/241 (46%), Gaps = 16/241 (6%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R+I+ D ETTGL + + DR++E   +E+     T     +++ P+ R    EA  +HG
Sbjct: 3   RERQIILDTETTGLYADRGDRMLEFAGIEMKKRQLTMNNLHLYIHPD-RDIPEEAAAVHG 61

Query: 65  ITDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           IT E L  ++ P F  +  +  DF   + AE I HNA+FDVGF+N E  R+    ++   
Sbjct: 62  ITLEQLEERNAPKFEQVGRQIADFL--RGAELIIHNARFDVGFLNMEFARMGLPSIEELD 119

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             I DTL++AR K P  +  L++LC R  +  S R  HGAL+D  LL++VY+ M      
Sbjct: 120 CEITDTLAMAREKFPGQKASLDALCSRLDVDRSKRVLHGALIDCELLAEVYLAMTREQ-- 177

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAI 236
             F     E+     +                  R   EE   H + +  L    G   +
Sbjct: 178 --FDLVGAEETAAAAQSADTGIAVQTAGGGLRILRADAEETAAHLEYLAELDKASGGQCL 235

Query: 237 W 237
           W
Sbjct: 236 W 236


>gi|229544431|ref|ZP_04433489.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
 gi|229324916|gb|EEN90593.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
          Length = 1442

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 16/230 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  D IIEI AV++ D  +   TF+ F  P GR  S   ++
Sbjct: 420 VHLDEATYVVFDVETTGLSAVYDTIIEIAAVKIQDG-EVVDTFERFANP-GRPLSNTIIE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITD+ LKD P  S +  E+ ++    +A  +AHNA FD+GF+N  L++    P   +
Sbjct: 478 LTHITDDMLKDAPDISEVLKEYNEWIG--DAVLVAHNASFDIGFLNVGLKKAGL-PKSNN 534

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL + R  +P  +N  LN+L K++ + ++    H A+ D+     +++KM+     
Sbjct: 535 PVIDTLELGRFLYPDFKNYRLNTLAKKFNVELTQH--HRAIYDTEATGQIFLKMLKDARN 592

Query: 181 INFGFKTNEDRFFKE---EKKTVP-NISLLKRDKP----LFTRITKEELD 222
               +    +++  E    K+  P + +LL R +     LF  I+   +D
Sbjct: 593 RGITYHDELNQYMGEGGAYKRARPSHCTLLVRTQEGLKNLFKLISLSHID 642


>gi|71083046|ref|YP_265765.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762529|ref|ZP_01264494.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062159|gb|AAZ21162.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718331|gb|EAS84981.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002]
          Length = 223

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 83/230 (36%), Positives = 128/230 (55%), Gaps = 12/230 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M++++ D ETTGL  +   RI+EIG +EL +   T   F  +L P  RK S +AL++HG 
Sbjct: 1   MKEVILDTETTGLSVRDGHRIVEIGCIELENLIPTKNRFHCYLNPE-RKVSEKALEVHGY 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDEFL     F  I  EF  F   +N   + HNA+FD+  +N EL  + K+ L+   ++D
Sbjct: 60  TDEFLSTHKKFGDIVDEFLVFI--ENKRLVIHNAEFDLSHLNNELSLLGKEKLNSENVVD 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL++AR K P S   L++LCKRY I  S R++H AL+D  LL+ VYI ++    +    F
Sbjct: 118 TLALARDKFPGSPISLDALCKRYRIDNSKRTQHTALIDCDLLAKVYINLL-DQKEPTLNF 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ-TLGKN 234
           K       ++ +K + N +   R      + ++ EL  H + ++ +L KN
Sbjct: 177 KN------EDNEKIIINSNDTNRYYKKVVKPSEAELKLHKEYLKNSLKKN 220


>gi|238022806|ref|ZP_04603232.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147]
 gi|237866009|gb|EEP67145.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147]
          Length = 244

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 78/244 (31%), Positives = 124/244 (50%), Gaps = 9/244 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           M   +  R+I+ D ETTG         DR+IE   +E+++   T  T  +++ P  R   
Sbjct: 1   MTPAHP-RQIILDTETTGFYHSAAENPDRLIEFAGLEMVNRQLTENTLHLYIHPQ-RDIP 58

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            EA  +HGIT + L+ KP F+ +  + +DF   + AE I HNAKFD+GF+NAE  R+   
Sbjct: 59  AEAAAIHGITLDQLEGKPVFAQVAQQIFDFL--KGAELIIHNAKFDIGFLNAEFARVGLP 116

Query: 117 PLDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           P+D    +IDTL +AR K+P  +N+L++LC R G+  S R  HGAL+D  LL  VY+ M 
Sbjct: 117 PIDSVCSVIDTLEMARNKYPGQKNNLDALCNRLGVDRSRRVLHGALIDCELLGGVYLAMT 176

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
                +    +   +      + T     + + D  +      +E   H+  +  LG   
Sbjct: 177 RNQFSLTDVLEDEAETAAPAAQTTAAPAPVFRADSLIVLHADADEAAAHEAYLDGLGSEC 236

Query: 236 IWDR 239
           ++ +
Sbjct: 237 VYRQ 240


>gi|20807845|ref|NP_623016.1| DNA polymerase III PolC [Thermoanaerobacter tengcongensis MB4]
 gi|24418364|sp|Q8RA32|DPO3_THETN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|20516408|gb|AAM24620.1| DNA polymerase III alpha subunit, the Gram-positive type
           [Thermoanaerobacter tengcongensis MB4]
          Length = 1401

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 98/176 (55%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL + ND IIEIGAV++ +  K   TF+ F+ P     S    KL GI + 
Sbjct: 388 FVVFDIETTGLSNINDEIIEIGAVKIKN-KKIVDTFETFVNPQI-PISSFITKLTGIDES 445

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  +F +F   + A  +AHNA FDV FI ++ +++       + ++DTL 
Sbjct: 446 MVKDAPLIEEVLPKFLEF--AKGAVLVAHNANFDVSFIKSKAKKLGLTV--ENTVLDTLE 501

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++R  +   +N  L++L + + + + H   H A+ D+   ++++IKM+    +I  
Sbjct: 502 LSRHLYQDLKNYKLDTLAEFFEVKLLHH--HRAVEDAKATAEIFIKMLEKLQEIGI 555


>gi|254479461|ref|ZP_05092788.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034604|gb|EEB75351.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carboxydibrachium pacificum DSM 12653]
          Length = 1375

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 98/176 (55%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL + ND IIEIGAV++ +  K   TF+ F+ P     S    KL GI + 
Sbjct: 388 FVVFDIETTGLSNINDEIIEIGAVKIKN-KKIVDTFETFVNPQI-PISSFITKLTGIDES 445

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  +F +F   + A  +AHNA FDV FI ++ +++       + ++DTL 
Sbjct: 446 MVKDAPLIEEVLPKFLEF--AKGAVLVAHNANFDVSFIKSKAKKLGLTV--ENTVLDTLE 501

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++R  +   +N  L++L + + + + H   H A+ D+   ++++IKM+    +I  
Sbjct: 502 LSRHLYQDLKNYKLDTLAEFFEVKLLHH--HRAVEDAKATAEIFIKMLEKLQEIGI 555


>gi|167627857|ref|YP_001678357.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597858|gb|ABZ87856.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 230

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 91/239 (38%), Positives = 128/239 (53%), Gaps = 20/239 (8%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++  D ETTG D K  +RIIE GAVE++D   T      +  PN  +    AL +HG+T
Sbjct: 3   RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRKVTGNNLHFYCNPN-YEVEAGALAVHGLT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-----QRINKDPLDPS 121
           +EFL DKP F     +  DF   + AE I HNA FDV FIN EL      +        +
Sbjct: 62  NEFLADKPLFEENVDQMIDFL--RGAEIIIHNAAFDVPFINWELGLLKNNKYGTLEQHVA 119

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +I+D+L +AR+KHP  +N+L++LCKRY I   HR+ HGALLDS LL+DVY+ M  G  Q 
Sbjct: 120 KIVDSLELARKKHPLQKNNLDALCKRYHIRNDHRTFHGALLDSELLADVYLAMTGG--QT 177

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAIW 237
           N   +T ++            + L   ++ +        + EHDK +     L ++A W
Sbjct: 178 NLVLQTTKNASKDTIDIDFDKLKLRSANETIIN------ISEHDKYLCNILKLEESAKW 230


>gi|154484752|ref|ZP_02027200.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC
           27560]
 gi|149734600|gb|EDM50517.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC
           27560]
          Length = 1474

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 92/168 (54%), Gaps = 9/168 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFD+ETTG  +K+D+IIEIGAV++ +    +R F  F+ P          KL  I D
Sbjct: 408 RYVVFDLETTGFSAKSDKIIEIGAVKVENGKIIDR-FSTFVNPEI-PIPFRIEKLTSIND 465

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + D P    I  +F +F   +++  +AHN+ FD+ FI A  +R  +D      +IDT+
Sbjct: 466 EMVIDAPKIEEILPQFMEFC--KDSVMVAHNSDFDMSFIEANCKR--QDLECDFTVIDTV 521

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +++R       R  L+++ K  GI + H   H A+ D+   + +++K+
Sbjct: 522 AMSRYLIIGLGRYKLDNVAKALGIVLDHH--HRAVDDAECTALIFLKL 567


>gi|296330873|ref|ZP_06873348.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674391|ref|YP_003866063.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151878|gb|EFG92752.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412635|gb|ADM37754.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 1437

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 104/185 (56%), Gaps = 9/185 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+ R  S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P    +  +F ++  +     +AHNA FD+GF+N   +++ +     + +IDTL 
Sbjct: 479 MLRDAPDVVDVIRDFREWIGDD--ILVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFGF 185
           + R  +P    + LN+LCK++ I ++    H A+ D+   + + +KM+   ++  I +  
Sbjct: 537 LGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKMLKDAAEKGIQYHD 594

Query: 186 KTNED 190
           + NE+
Sbjct: 595 ELNEN 599


>gi|218288332|ref|ZP_03492631.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241691|gb|EED08864.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 1440

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 119/254 (46%), Gaps = 30/254 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++   +VFD ETTGL+++ D +IEI AV++      + T+   + P  R   P+ ++L G
Sbjct: 423 DETEYVVFDTETTGLNAREDTLIEIAAVKVKAGQIVD-TYATLIDPE-RALDPKIVELTG 480

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E +  +P        F  F   + A  +AHNA+FDVGF+N   +R+  DP +   +I
Sbjct: 481 ITNEMVAGQPKLKEALDGFRQF--ARGAVLVAHNAEFDVGFLNQCAERLGLDPWEE-PVI 537

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           DTL++AR  +P  +N  L +L +++ + + +   H AL DS   + V++ M+        
Sbjct: 538 DTLALARVLYPGEKNYKLKTLTQKFSVDLVNH--HRALADSEATAKVFVHMLKDAKARGI 595

Query: 184 G--FKTNEDRFFKEEKKTVP-NISLLKRDKP------------------LFTRITKEELD 222
                 N  R   +  +  P + ++L R++                      RI K  L 
Sbjct: 596 HNLLDMNHLRGQIDISRVRPFHATVLVRNREGLRNLYRLVSIAHTQYLHRVPRIPKSALA 655

Query: 223 EHDKTIQTLGKNAI 236
            H + +  +G    
Sbjct: 656 RHREGL-LIGTACR 668


>gi|262277819|ref|ZP_06055612.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114]
 gi|262224922|gb|EEY75381.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114]
          Length = 223

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 86/224 (38%), Positives = 132/224 (58%), Gaps = 10/224 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M++++ D ETTGL S ND+IIEI  +E+ D+  T   F VFL P   + S  A   HGI+
Sbjct: 1   MKEVLLDTETTGLSSVNDKIIEIACIEIEDHIPTGEKFHVFLNPE-MEISQGAYDTHGIS 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            EFLK+KP F+ +  +F  F + +  + + HNA+FD+ F+N EL+ + +  +    I+DT
Sbjct: 60  KEFLKNKPKFNDVAKDFTKFIDGK--KLVIHNAEFDLAFLNKELKEVGEKQISKDNIVDT 117

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           L+IAR K P ++N L++LCKR+ I  S R KH ALLD  LL+ VYI++     +  F F 
Sbjct: 118 LNIAREKFPGAQNSLDALCKRFKIDNSRRQKHSALLDCELLAKVYIELFEK-KEPTFEFD 176

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
            N       + +++ N+  +K  K +  +IT EE   H + +Q 
Sbjct: 177 LNA------QDESIKNVKNIKDRKQIIAQITNEEKRLHKEFLQK 214


>gi|169824428|ref|YP_001692039.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328]
 gi|167831233|dbj|BAG08149.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328]
          Length = 1421

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 9/186 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N    +VFDIETTGL +  ++I EIGAV+++D    +  F   + P       +  +L 
Sbjct: 397 MNLREFVVFDIETTGLSNATEKITEIGAVKIVDNKIVDE-FNQLINPEI-PIPEKITELT 454

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            IT+E +KD P   ++  EF  F    +   IAHNA FD+GFI      +  +P+     
Sbjct: 455 SITNEMVKDMPKIDAVLPEFLKFVG--DCTLIAHNADFDMGFIKKNCIDLGINPV--RTY 510

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDTL+ AR   P  + + L++L K+Y + + +   H A  D+    +V+I M+    Q  
Sbjct: 511 IDTLAFARALEPHLKNHKLDTLTKKYNVNLFNH--HRACDDARATGEVFICMVNNLEQRG 568

Query: 183 FGFKTN 188
           F F  N
Sbjct: 569 FKFDIN 574


>gi|303233818|ref|ZP_07320472.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna BVS033A4]
 gi|302495252|gb|EFL55004.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna BVS033A4]
          Length = 1421

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 9/186 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N    +VFDIETTGL +  ++I EIGAV+++D    +  F   + P       +  +L 
Sbjct: 397 MNLREFVVFDIETTGLSNATEKITEIGAVKIVDNKIVDE-FNQLINPEI-PIPEKITELT 454

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            IT+E +KD P   ++  EF  F    +   IAHNA FD+GFI      +  +P+     
Sbjct: 455 SITNEMVKDMPKIDAVLPEFLKFVG--DCTLIAHNADFDMGFIKKNCIDLGINPV--RTY 510

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDTL+ AR   P  + + L++L K+Y + + +   H A  D+    +V+I M+    Q  
Sbjct: 511 IDTLAFARALEPHLKNHKLDTLTKKYNVNLFNH--HRACDDARATGEVFICMVNNLEQRG 568

Query: 183 FGFKTN 188
           F F  N
Sbjct: 569 FKFDIN 574


>gi|323705405|ref|ZP_08116980.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535307|gb|EGB25083.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 1410

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 103/173 (59%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL S ND IIEIGAV++ ++   + TF+ F+ P     S    KL GITD+
Sbjct: 399 FVVFDIETTGLSSINDNIIEIGAVKIKNFQIVD-TFETFVNPQVH-ISKFITKLTGITDD 456

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+ PS   I  +F DF   +++  +AHNA FDV FI  + + +  +  +P  ++DTL 
Sbjct: 457 MVKEYPSIEEILPKFLDFI--KDSILVAHNANFDVTFIKTKARNLGMEVDNP--VLDTLE 512

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           ++R  + + +N  L+++ +  G+++ +   H A+ D+   ++++IK +    +
Sbjct: 513 LSRHMYENLKNYKLDTVAQHLGVSLENH--HRAVDDAKATAEIFIKSINKLKE 563


>gi|258511408|ref|YP_003184842.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478134|gb|ACV58453.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 1440

 Score =  188 bits (478), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 119/254 (46%), Gaps = 30/254 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++   +VFD ETTGL+++ D +IEI AV++      + T+   + P  R   P+ ++L G
Sbjct: 423 DETEYVVFDTETTGLNAREDTLIEIAAVKVKAGQIVD-TYATLIDPE-RSLDPKIVELTG 480

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E +  +P        F  F   + A  +AHNA+FDVGF+N   +R+  DP +   +I
Sbjct: 481 ITNEMVAGQPKLREALDGFRQF--ARGAVLVAHNAEFDVGFLNQCAERLGLDPWE-QPVI 537

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           DTL++AR  +P  +N  L +L +++ + + +   H AL DS   + V++ M+        
Sbjct: 538 DTLALARVLYPGEKNYKLKTLTQKFSVDLVNH--HRALADSEATAKVFVHMLKDAKARGI 595

Query: 184 G--FKTNEDRFFKEEKKTVP-NISLLKRDKP------------------LFTRITKEELD 222
                 N  R   +  +  P + ++L R++                      RI K  L 
Sbjct: 596 HNLLDMNHLRGQIDISRVRPFHATVLVRNREGLRNLYRLVSIAHTQYLHRVPRIPKSALA 655

Query: 223 EHDKTIQTLGKNAI 236
            H + +  +G    
Sbjct: 656 RHREGL-LIGTACR 668


>gi|323143749|ref|ZP_08078417.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT
           12066]
 gi|322416462|gb|EFY07128.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT
           12066]
          Length = 309

 Score =  188 bits (478), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 75/198 (37%), Positives = 119/198 (60%), Gaps = 9/198 (4%)

Query: 7   MRKIVFDIETTG----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +R++  D ETTG      +   RIIE+G VE+++   T R  Q F+ P+ R    EA ++
Sbjct: 4   LRQVALDTETTGKSDDGTTGTHRIIEVGCVEIINRRLTGRQLQFFVNPD-RHIDEEATEV 62

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN--AELQRINKDPLDP 120
           HGITDE L DKP F+ + +E  DF   + +E + HNAKFD  F++   +L ++N+   D 
Sbjct: 63  HGITDEMLADKPHFADVANELIDFI--RGSELLIHNAKFDSAFLDKEWDLLKLNEHTKDM 120

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +I+DT+ +AR+ +P+++ +L++LC  Y I  S R+ HGALLD+ LL++VY+ M  G S 
Sbjct: 121 CKIVDTVELARKINPNNQANLDNLCSIYDIDNSRRTVHGALLDAQLLAEVYLAMTGGQSS 180

Query: 181 INFGFKTNEDRFFKEEKK 198
            +FG  +        E+ 
Sbjct: 181 FDFGEDSVNALSRHWERP 198


>gi|16078721|ref|NP_389540.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221309536|ref|ZP_03591383.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221313860|ref|ZP_03595665.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221318783|ref|ZP_03600077.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323055|ref|ZP_03604349.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|118793|sp|P13267|DPO3_BACSU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|40060|emb|CAA36362.1| unnamed protein product [Bacillus subtilis]
 gi|2634030|emb|CAB13531.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 1437

 Score =  188 bits (477), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 104/185 (56%), Gaps = 9/185 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+ R  S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P    +  +F ++  +     +AHNA FD+GF+N   +++ +     + +IDTL 
Sbjct: 479 MLQDAPDVVDVIRDFREWIGDD--ILVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFGF 185
           + R  +P    + LN+LCK++ I ++    H A+ D+   + + +KM+   ++  I +  
Sbjct: 537 LGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKMLKDAAEKGIQYHD 594

Query: 186 KTNED 190
           + NE+
Sbjct: 595 ELNEN 599


>gi|321315425|ref|YP_004207712.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
 gi|320021699|gb|ADV96685.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
          Length = 1437

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 104/185 (56%), Gaps = 9/185 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+ R  S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P    +  +F ++  +     +AHNA FD+GF+N   +++ +     + +IDTL 
Sbjct: 479 MLQDAPDVVDVIRDFREWIGDD--ILVAHNASFDMGFLNVAYKKLLEVDKAKNPVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFGF 185
           + R  +P    + LN+LCK++ I ++    H A+ D+   + + +KM+   ++  I +  
Sbjct: 537 LGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKMLKDAAEKGIQYHD 594

Query: 186 KTNED 190
           + NE+
Sbjct: 595 ELNEN 599


>gi|291484213|dbj|BAI85288.1| DNA polymerase III PolC [Bacillus subtilis subsp. natto BEST195]
          Length = 1437

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 104/185 (56%), Gaps = 9/185 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+ R  S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P    +  +F ++  +     +AHNA FD+GF+N   +++ +     + +IDTL 
Sbjct: 479 MLQDAPDVVDVIRDFREWIGDD--ILVAHNASFDMGFLNVAYKKLLEVDKAKNPVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFGF 185
           + R  +P    + LN+LCK++ I ++    H A+ D+   + + +KM+   ++  I +  
Sbjct: 537 LGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKMLKDAAEKGIQYHD 594

Query: 186 KTNED 190
           + NE+
Sbjct: 595 ELNEN 599


>gi|71065393|ref|YP_264120.1| bifunctional ribonuclease HI/DNA polymerase III, epsilon subunit
           [Psychrobacter arcticus 273-4]
 gi|71038378|gb|AAZ18686.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
           epsilon subunit [Psychrobacter arcticus 273-4]
          Length = 527

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/190 (37%), Positives = 111/190 (58%), Gaps = 5/190 (2%)

Query: 3   RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R    R+++ D ETTGLD  K DRIIE+G VE++    T     V++ P  R    E ++
Sbjct: 297 RHESDRQLIMDTETTGLDPLKGDRIIEVGIVEMIGRKFTGEKLHVYINPQ-RGMDEEVIR 355

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDP 120
           +HGI++ FL DKP+F  +    +DF +   AE IAHNA FD+ F+N E  ++   D  + 
Sbjct: 356 IHGISEAFLTDKPTFDQVAQSLYDFMD--GAEIIAHNASFDMNFLNMEFAKVGMHDFAER 413

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            R+ D+L +A++++P  +N L++L +R  +    R+ HGALLDS +L++VY+ M  G   
Sbjct: 414 VRVTDSLVMAKQQYPGQKNTLDALVRRLDVGKQDRTFHGALLDSEILAEVYLTMTGGQVT 473

Query: 181 INFGFKTNED 190
           +     T  D
Sbjct: 474 LGIEDDTQAD 483


>gi|291519550|emb|CBK74771.1| DNA polymerase III catalytic subunit, PolC type [Butyrivibrio
           fibrisolvens 16/4]
          Length = 1480

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 98/197 (49%), Gaps = 9/197 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG + KN++IIEIGAV+  D    +  F  F+ P          +L  ITD+
Sbjct: 448 YVVFDIETTGFNPKNNKIIEIGAVKFKDGEIVD-HFSEFINPE-VPIPYRITELTSITDD 505

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   I  +F +F   +    +AHNA FD  FI    +++  +       +DT+ 
Sbjct: 506 MVLDAPTIDVILPKFMEFC--KGTVLVAHNAGFDTSFIRYNCKQLGLEY--DYTHVDTVE 561

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR  HP ++R +L+++CK   +   H   H A+ D+ + + ++ K +V     N    T
Sbjct: 562 VARYLHPNNARFNLDAVCKLENVVNEHH--HRAVADAEVTAKIFEKFIVKLEAENIHTLT 619

Query: 188 NEDRFFKEEKKTVPNIS 204
             +   K + + +  + 
Sbjct: 620 ELNDKAKPKAEQIKKMK 636


>gi|317129167|ref|YP_004095449.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM
           2522]
 gi|315474115|gb|ADU30718.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM
           2522]
          Length = 1434

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/197 (33%), Positives = 108/197 (54%), Gaps = 10/197 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTGL +  + IIE+ AV++ +    +R F+ F  P+  K +P  + L GITD+
Sbjct: 420 YIVFDVETTGLSAVYNTIIELAAVKVKNGEIVDR-FESFANPH-EKLTPLIIDLTGITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P    +  +F ++    +A  +AHNA FD+GFINA  Q+I       + +IDTL 
Sbjct: 478 MVENAPEVDDVLKDFHEWIG--DATLVAHNASFDMGFINAGFQKIGYGHA-TNPVIDTLE 534

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF--GF 185
           + R  +P+ +N  LN+LCK++ I +   + H A+ D+     +  KM+   +       F
Sbjct: 535 LGRLLYPTFKNYRLNTLCKKFNIELV--AHHRAIYDAEATGHLLWKMVKDATSQGIMKHF 592

Query: 186 KTNEDRFFKEEKKTVPN 202
           + NE     + KK  PN
Sbjct: 593 QLNEQTSKDDYKKQRPN 609


>gi|196003864|ref|XP_002111799.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens]
 gi|190585698|gb|EDV25766.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens]
          Length = 289

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 81/232 (34%), Positives = 121/232 (52%), Gaps = 7/232 (3%)

Query: 3   RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
             + +R++V D ETTGL  +   RIIEIG +EL+D+  T+RTFQ ++ P     S  A +
Sbjct: 9   NLSPLREVVLDTETTGLSVRTGHRIIEIGCLELIDHQPTSRTFQCYINPK-FPVSERAFE 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H ++++FL+  P+F  I  +F DF  E     I HN  FD+ FIN E Q++N   +   
Sbjct: 68  VHHLSNKFLEGFPTFDGIVQDFRDFIQED--TLIIHNGHFDIKFINNEFQKLNIPEISFE 125

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK-HGALLDSHLLSDVYIKMMVGGSQ 180
           R+IDT+ +AR+ +P     L+SLC R+ I  S RS  HGAL D  LL  VY K++    Q
Sbjct: 126 RVIDTMLMARKLYPRQPASLDSLCDRFNIDKSSRSLGHGALTDVKLLQLVYAKLLK--DQ 183

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
              G         +  K  V    + K+ +P  T     E        +++G
Sbjct: 184 DALGLNVINQSATQTSKSIVNKTDMSKQHRPAQTAKVDTEKVASCTNAKSIG 235


>gi|158320555|ref|YP_001513062.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
 gi|158140754|gb|ABW19066.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
          Length = 1441

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 9/172 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   I+FDIETTGL SKND I EIGA+++ +    + +F   + P  R    + ++L GI
Sbjct: 423 EDEFIIFDIETTGLSSKNDEITEIGAIKIKNNRIID-SFSTLINPE-RSIPEKIVELTGI 480

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D+ +KD+P+   +  +F DF    +   +AHN+ FD GFI  + +R        +  ID
Sbjct: 481 SDDMVKDQPTIEVVLPQFLDFIG--DCPVVAHNSDFDTGFIRDKAERYELSF--DNIAID 536

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           TL +AR   P   ++ LN + K   I++ +   H A+ D+   ++++IK + 
Sbjct: 537 TLKLARALLPDLKKHRLNVIAKELNISLENH--HRAVDDAKATAEIFIKFVE 586


>gi|332976806|gb|EGK13634.1| DNA polymerase III PolC [Desmospora sp. 8437]
          Length = 1099

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 99/171 (57%), Gaps = 8/171 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +VFD+ETTGL + +D IIE+ AV++ D    +R F+ F+ P+ RK +    +L GI
Sbjct: 413 EDTYVVFDVETTGLSAVHDEIIELAAVKVKDGEIIDR-FESFINPH-RKLTATITELTGI 470

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE + D P  S +   + +F   +    +AHNA+FD+GF+ A  ++    P+D   ++D
Sbjct: 471 TDEMVVDAPELSEVLPRYLEFI--EGTVLVAHNARFDMGFLQAACKKTGCQPVD-HPVLD 527

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL + R  +P  +N  LN+LCK++ I ++    H A+ D+     +  +M+
Sbjct: 528 TLELGRFLYPRLKNHRLNTLCKQFDIELTQH--HRAIYDAEATGFLLWRML 576


>gi|295399848|ref|ZP_06809829.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111640|ref|YP_003989956.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|294978251|gb|EFG53848.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216741|gb|ADP75345.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1]
          Length = 1436

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 8/192 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +VFD+ETTGL +  + IIE+ AV++ D    +R F  F  P+    S   ++L GI
Sbjct: 418 EDTYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FTSFANPH-HPLSMTTIELTGI 475

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+ LKD P    +  +F+D+    ++  +AHNA FD+GF+N    +I    +  + +ID
Sbjct: 476 TDDMLKDAPDVEEVLRQFYDWIG--DSVLVAHNASFDIGFLNVGFAKIGLGKV-TNPVID 532

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           TL +AR  +P  +N  LN+LCK++ I ++    H A+ D+     + ++M+    +    
Sbjct: 533 TLELARFLYPDLKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLLMRMLKDAQERGIL 590

Query: 185 FKTNEDRFFKEE 196
           +    ++  KEE
Sbjct: 591 YHDELNKRSKEE 602


>gi|229824076|ref|ZP_04450145.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
 gi|229786430|gb|EEP22544.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
          Length = 1435

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/191 (34%), Positives = 102/191 (53%), Gaps = 9/191 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL S  DRIIE+ AV++ +    + TF+ F+ P G   S    +L GITD 
Sbjct: 420 YVVFDVETTGLSSVYDRIIELAAVKMRNGEVID-TFEAFINP-GYHLSAMITELTGITDA 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P  + + + F +F   ++   +AHNA FD+GF+N    R+   P+    +IDTL 
Sbjct: 478 MLADAPPEAEVMARFAEF--SKDTILVAHNASFDMGFLNKTYARLGM-PVPDQPVIDTLE 534

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +P  R + LN L K YG+T+     H A+ DS     V  K++   ++  +G   
Sbjct: 535 LSRLVNPDMRSHRLNVLAKHYGVTLEQH--HRAVYDSETTGYVCYKLL-DQAKEQYGMVR 591

Query: 188 NEDRFFKEEKK 198
           +E    +  K 
Sbjct: 592 HEQLNEQVGKG 602


>gi|311068180|ref|YP_003973103.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
 gi|310868697|gb|ADP32172.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
          Length = 1437

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 104/190 (54%), Gaps = 9/190 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             +   IVFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+    S   ++L 
Sbjct: 416 LEEDTYIVFDVETTGLSAVYDTIIELAAVKIRGGEIIDK-FERFANPH-HPLSATTIELT 473

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD+ ++D P    +  +F ++ ++     +AHNA FD+GF+N   +R+ K     + +
Sbjct: 474 GITDDMVRDAPDVIDVVRDFREWIDDD--ILVAHNASFDMGFLNVAYKRLLKVEKAQNPV 531

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-- 180
           IDTL + R  +P    + LN+LCK++ I ++    H A+ D+     + +KM+   ++  
Sbjct: 532 IDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLLLKMLKDAAEKD 589

Query: 181 INFGFKTNED 190
           I +  + NE+
Sbjct: 590 IQYHDQLNEN 599


>gi|331085480|ref|ZP_08334565.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330407718|gb|EGG87216.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 1492

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 90/176 (51%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  +  DRIIEIGAV++ D +  +R F  F+ P       E  +L  ITD+
Sbjct: 463 FVVFDIETTGFSAAEDRIIEIGAVKITDGAIVDR-FSTFVNPE-VPIPFEIQQLTHITDD 520

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P        F DF  E  +  +AHNA FDVGFI     R+ +        +DT+ 
Sbjct: 521 MVLEAPKIEEALPAFLDFVGE--SALVAHNAGFDVGFIEQNCVRLGRS--RTFTSVDTVG 576

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +AR   P+ S+  LN + K   I++ +   H A+ D+   +++Y+K +    +   
Sbjct: 577 LARVLLPTLSKYKLNIVAKALNISLENH--HRAVDDAAATAEIYVKFIEMLKERGM 630


>gi|325660790|ref|ZP_08149418.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325472864|gb|EGC76074.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 1492

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 90/176 (51%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  +  DRIIEIGAV++ D +  +R F  F+ P       E  +L  ITD+
Sbjct: 463 FVVFDIETTGFSAAEDRIIEIGAVKITDGAIVDR-FSTFVNPE-VPIPFEIQQLTHITDD 520

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P        F DF  E  +  +AHNA FDVGFI     R+ +        +DT+ 
Sbjct: 521 MVLEAPKIEEALPAFLDFVGE--SALVAHNAGFDVGFIEQNCVRLGRS--RTFTSVDTVG 576

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +AR   P+ S+  LN + K   I++ +   H A+ D+   +++Y+K +    +   
Sbjct: 577 LARVLLPTLSKYKLNIVAKALNISLENH--HRAVDDAAATAEIYVKFIEMLKERGM 630


>gi|218133709|ref|ZP_03462513.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991084|gb|EEC57090.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1403

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 9/168 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFDIETTG  ++NDRIIEIGAV++ D    +R F  F+ P       +  KL  I D
Sbjct: 372 KYVVFDIETTGFSAENDRIIEIGAVKIEDGEIIDR-FSTFVNPE-VPIPFKIEKLTSIND 429

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P    +  EF +F   +    +AHNA+FD GFI  +  +        + ++DTL
Sbjct: 430 SMVMGAPKIEQVLPEFLEFC--EGCVVVAHNAEFDTGFIRNKAAKQGMTF--DNTVVDTL 485

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +IAR   P   N  L++L K + + ++  S H A+ D+   + +++KM
Sbjct: 486 AIARFLVPRLHNFKLDTLTKHFNVVLT--SHHRAVDDAEATAGIFLKM 531


>gi|315651645|ref|ZP_07904656.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
 gi|315486099|gb|EFU76470.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
          Length = 1483

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTG  +KND I EIGAV++++    +R F  F+ P  R       +L  I+D 
Sbjct: 459 FIVFDIETTGFSAKNDAITEIGAVKVVNGEIVDR-FSTFVNPK-RPIPFRIEELTHISDA 516

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P    I  +F DF   ++   +AHNA FD GFI    +RIN +      IIDT++
Sbjct: 517 MVVNAPVIEEILPKFLDFC--EDYTIVAHNAGFDTGFIRENAKRINAE--YNPSIIDTVA 572

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   P   R  L+++CK   I++     H A+ D+   ++++++ +
Sbjct: 573 MARLLLPDLNRFKLDTVCKALNISLEGH--HRAVNDAEATAEIWVEFI 618


>gi|93005683|ref|YP_580120.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis
           K5]
 gi|92393361|gb|ABE74636.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis
           K5]
          Length = 532

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 5/185 (2%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R+++ D ETTGLD  K DR+IE+G VE++    T     V++ P  R    E +++HGI+
Sbjct: 307 RQLIMDTETTGLDPQKGDRVIEVGIVEMIGRKFTGEKLHVYINPQ-RGMDEEVIRIHGIS 365

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIID 125
           + FL DKP+F  +    +DF +   AE IAHNA FD+ F+N E  ++   D  +  ++ D
Sbjct: 366 EAFLTDKPTFDQVAQSLYDFMD--GAEIIAHNASFDMNFLNMEFAKVGMHDFAERVKVTD 423

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +L +A++++P  +N L++L +R  +    R+ HGALLDS +L++VY+ M  G   +    
Sbjct: 424 SLVMAKQQYPGQKNTLDALVRRLDVGKQDRTFHGALLDSEILAEVYLAMTGGQVTLGIED 483

Query: 186 KTNED 190
               D
Sbjct: 484 DAQAD 488


>gi|226323840|ref|ZP_03799358.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
 gi|225207389|gb|EEG89743.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
          Length = 1535

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 94/176 (53%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  +  DRIIEIGAV++ D   T++ F  F+ P  R       +L  ITDE
Sbjct: 489 YVVFDIETTGFSAVTDRIIEIGAVKVEDGKITDK-FSTFVNPK-RPIPFRITELTSITDE 546

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   +I  +F +F    +A  +AHNA FDVGFI    +R   +       +DT++
Sbjct: 547 MVIDSPDIETILPQFIEFIG--DAVLVAHNASFDVGFIEQNCKRQKIEA--DFTYVDTVA 602

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +AR   P+  R  L+++ K   I++ +   H A+ D+   +++++K +    +   
Sbjct: 603 LARVLLPALNRFKLDTVAKALNISLENH--HRAVDDAGCTAEIFVKFVQMLKEREL 656


>gi|308173621|ref|YP_003920326.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7]
 gi|307606485|emb|CBI42856.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM
           7]
 gi|328553447|gb|AEB23939.1| DNA polymerase III PolC [Bacillus amyloliquefaciens TA208]
 gi|328911762|gb|AEB63358.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3]
          Length = 1437

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 104/190 (54%), Gaps = 9/190 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             +   +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+    S   ++L 
Sbjct: 416 LEEDTYVVFDVETTGLSAVYDTIIELAAVKIRGGEIIDK-FEAFANPH-HPLSATTIELT 473

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD+ ++D P    +  +F ++  +     +AHNA FD+GF+N   +R+ K     + +
Sbjct: 474 GITDDMVRDAPDVVDVVRDFKEWIGDD--VLVAHNASFDMGFLNVAYKRLLKTEKAKNPV 531

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-- 180
           IDTL +AR  +P    + LN+LCK++ I ++    H A+ D+     + +KM+   ++  
Sbjct: 532 IDTLELARFLYPEFKNHRLNTLCKKFDIELTQH--HRAVFDAEATGYLLLKMLKDAAEKD 589

Query: 181 INFGFKTNED 190
           I +  + NE+
Sbjct: 590 IFYHDQLNEN 599


>gi|311030091|ref|ZP_07708181.1| DNA polymerase III PolC [Bacillus sp. m3-13]
          Length = 1437

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 63/197 (31%), Positives = 101/197 (51%), Gaps = 10/197 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      +R F+ F  P+    S   + L GITD+
Sbjct: 422 YVVFDVETTGLSAMYDTIIELAAVKVKGGEIIDR-FESFANPH-HPLSATTINLTGITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P    +  +F ++   Q+   +AHNA FD+GF+N   QRI       + +IDTL 
Sbjct: 480 MVQNAPEVGDVLKQFSEWM--QDDILVAHNASFDMGFLNIGFQRIGLGKA-KNPVIDTLE 536

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFGF 185
           + R   PS +N  LN+LCK++ I ++    H A+ D+     + +KM+       I F  
Sbjct: 537 LGRLLFPSLKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLLVKMLKDAFEKGITFHD 594

Query: 186 KTNEDRFFKEEKKTVPN 202
           + NE     +  K    
Sbjct: 595 ELNEHSGTTDAYKRARP 611


>gi|52080261|ref|YP_079052.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52785638|ref|YP_091467.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52003472|gb|AAU23414.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC
           14580]
 gi|52348140|gb|AAU40774.1| PolC [Bacillus licheniformis ATCC 14580]
          Length = 1438

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 9/185 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++       R F+ F  P+ R  S   ++L GITD+
Sbjct: 422 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIER-FERFANPH-RPLSATIIELTGITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD P    +  +F ++  +     +AHNA FD+GFIN   +R+       + +IDTL 
Sbjct: 480 MLKDAPEVEEVIRDFKEWVGDH--TLVAHNASFDIGFINVAYKRLLNSEKVQNPVIDTLE 537

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN--FGF 185
           + R  +P    + LN+LCK++ I ++    H A+ D+     + +KM+   ++ N  +  
Sbjct: 538 LGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATGYLLVKMLKDAAEKNILYHD 595

Query: 186 KTNED 190
           + NE+
Sbjct: 596 QLNEN 600


>gi|302380708|ref|ZP_07269173.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna ACS-171-V-Col3]
 gi|302311651|gb|EFK93667.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna ACS-171-V-Col3]
          Length = 1421

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 9/186 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N    +VFDIETTGL +  ++I EIGAV+++D    +  F   + P       +  +L 
Sbjct: 397 MNLREFVVFDIETTGLSNATEKITEIGAVKIVDNKIVDE-FNQLINPEI-PIPEKITELT 454

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            IT+E +KD P   ++  EF  F    +   IAHNA FD+GFI      +  +P+     
Sbjct: 455 SITNEMVKDMPKIDAVLPEFLKFVG--DCTLIAHNADFDMGFIKKNCIDLGINPV--RTY 510

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDTL+ AR      + + L++L K+Y + + +   H A  D+    +V+I M+    Q  
Sbjct: 511 IDTLAFARALESHLKNHKLDTLTKKYNVNLFNH--HRACDDARATGEVFICMVNNLEQRG 568

Query: 183 FGFKTN 188
           F F  N
Sbjct: 569 FKFDIN 574


>gi|319645959|ref|ZP_08000189.1| PolC protein [Bacillus sp. BT1B_CT2]
 gi|317391709|gb|EFV72506.1| PolC protein [Bacillus sp. BT1B_CT2]
          Length = 1463

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 9/185 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++       R F+ F  P+ R  S   ++L GITD+
Sbjct: 422 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIER-FERFANPH-RPLSATIIELTGITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD P    +  +F ++  +     +AHNA FD+GFIN   +R+       + +IDTL 
Sbjct: 480 MLKDAPEVEEVIRDFKEWVGDH--TLVAHNASFDIGFINVAYKRLLNSEKVQNPVIDTLE 537

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN--FGF 185
           + R  +P    + LN+LCK++ I ++    H A+ D+     + +KM+   ++ N  +  
Sbjct: 538 LGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATGYLLVKMLKDAAEKNILYHD 595

Query: 186 KTNED 190
           + NE+
Sbjct: 596 QLNEN 600


>gi|154686075|ref|YP_001421236.1| DNA polymerase III PolC [Bacillus amyloliquefaciens FZB42]
 gi|154351926|gb|ABS74005.1| PolC [Bacillus amyloliquefaciens FZB42]
          Length = 1437

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 104/190 (54%), Gaps = 9/190 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             +   +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+    S   ++L 
Sbjct: 416 LEEDTYVVFDVETTGLSAVYDTIIELAAVKIRGGEIIDK-FEAFANPH-HPLSATTIELT 473

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD+ ++D P    +  +F ++  +     +AHNA FD+GF+N   +R+ K     + +
Sbjct: 474 GITDDMVRDAPDVVDVVRDFKEWIGDD--VLVAHNASFDMGFLNVAYKRLLKTEKAKNPV 531

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-- 180
           IDTL +AR  +P    + LN+LCK++ I ++    H A+ D+     + +KM+   ++  
Sbjct: 532 IDTLELARFLYPEFKNHRLNTLCKKFDIELTQH--HRAVFDAEATGYLLLKMLKDAAEKD 589

Query: 181 INFGFKTNED 190
           I +  + NE+
Sbjct: 590 IFYHDQLNEN 599


>gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 1410

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 107/197 (54%), Gaps = 10/197 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL S ND IIEIGAV++ D    + TF+ F+ P     S    KL GITD+
Sbjct: 399 FVVFDIETTGLSSINDSIIEIGAVKIKDCQIVD-TFETFVNPQIH-ISNFITKLTGITDD 456

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K  P    +  +F +F   + +  +AHNA FDV FI  + + +  +  +P  ++DTL 
Sbjct: 457 MVKRYPPIDEVLPKFLEFI--KGSTLVAHNANFDVTFIKTKAKNLGIEVDNP--VLDTLE 512

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  + + +N  L+++ +  G+++ +   H A+ D+   +++++K +    +     K 
Sbjct: 513 LSRHMYENLKNYKLDTVAQHLGVSLENH--HRAVDDARATAEIFLKSINKLKENGIE-KV 569

Query: 188 NEDRFFKEEKKTVPNIS 204
           NE   + + K  +  + 
Sbjct: 570 NEINSYLKNKVDIKKMP 586


>gi|194015013|ref|ZP_03053630.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           pumilus ATCC 7061]
 gi|194014039|gb|EDW23604.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           pumilus ATCC 7061]
          Length = 1437

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 102/185 (55%), Gaps = 9/185 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      +R F+ F  P+    S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKIKGGEIIDR-FEAFANPH-HPLSATTIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  +F ++  +     +AHNA FD+GF+N   +R+ K     + +IDTL 
Sbjct: 479 MVKDAPDVVDVVRDFKEWIGQD--ILVAHNASFDMGFLNTAYKRLLKTDKASNPVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFGF 185
           + R  +P    + LN+LCK++ I ++    H A+ D+     + +KM+   ++  I +  
Sbjct: 537 LGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLMLKMLKDAAEKDIAYHD 594

Query: 186 KTNED 190
           + NE+
Sbjct: 595 QLNEN 599


>gi|239826652|ref|YP_002949276.1| DNA polymerase III PolC [Geobacillus sp. WCH70]
 gi|239806945|gb|ACS24010.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70]
          Length = 1435

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 59/194 (30%), Positives = 105/194 (54%), Gaps = 8/194 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +VFD+ETTGL +  + IIE+ AV++ D    +R F  F  P+    S   ++L 
Sbjct: 415 LSEDTYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FTSFANPH-HPLSITTIELT 472

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD+ LKD P    +  +F+D+    ++  +AHNA FD+GF+N    ++    +  + +
Sbjct: 473 GITDDMLKDAPDVEEVLRQFYDWMG--DSILVAHNASFDIGFLNVGFTKLGLGKV-TNPV 529

Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDTL +AR  +P  +N  LN+LCK++ I ++    H A+ D+     + ++++    +  
Sbjct: 530 IDTLELARFLYPELKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLLMRLLKDAQERG 587

Query: 183 FGFKTNEDRFFKEE 196
             +    +   KEE
Sbjct: 588 ILYHDELNERSKEE 601


>gi|212639526|ref|YP_002316046.1| DNA polymerase III PolC [Anoxybacillus flavithermus WK1]
 gi|212561006|gb|ACJ34061.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Anoxybacillus flavithermus WK1]
          Length = 1430

 Score =  185 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 110/210 (52%), Gaps = 15/210 (7%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R      +VFD+ETTGL +  D IIE+ AV++ +    +R F+ F  P+    S   ++L
Sbjct: 409 RLMDDTFVVFDVETTGLSAVYDTIIELAAVKVKNGEIIDR-FESFANPH-HPLSATTIEL 466

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             ITD+ LKD P    +  +F+ + +  +   +AHNA FD+GF+NA  ++IN+  +  + 
Sbjct: 467 TKITDDMLKDAPDVEEVLEKFYHWID--DCVLVAHNATFDIGFLNAGFKKINRGKV-TNP 523

Query: 123 IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +IDTL +AR  +P  +N  LN+LCK++ I ++    H A+ D+     + I ++    + 
Sbjct: 524 VIDTLELARYLYPELKNHRLNTLCKKFNIELTQH--HRAIYDAEATGYLLIHLLKELDEK 581

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
              +    +   KE+          +R +P
Sbjct: 582 GIQYMDQLNEASKEQGA-------FQRSRP 604


>gi|157692337|ref|YP_001486799.1| DNA polymerase III PolC [Bacillus pumilus SAFR-032]
 gi|157681095|gb|ABV62239.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus
           SAFR-032]
          Length = 1437

 Score =  185 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 102/185 (55%), Gaps = 9/185 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      +R F+ F  P+    S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKIKGGEIIDR-FEAFANPH-HPLSATTIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P    +  +F ++  +     +AHNA FD+GF+N   +R+ K     + +IDTL 
Sbjct: 479 MVRDAPDVVDVVRDFKEWIGQD--ILVAHNASFDMGFLNTAYKRLLKTDKASNPVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFGF 185
           + R  +P    + LN+LCK++ I ++    H A+ D+     + +KM+   ++  I +  
Sbjct: 537 LGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLMLKMLKDAAEKDIAYHD 594

Query: 186 KTNED 190
           + NE+
Sbjct: 595 QLNEN 599


>gi|306820890|ref|ZP_07454510.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551004|gb|EFM38975.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 1398

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 100/201 (49%), Gaps = 16/201 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + IVFD+ETTG  ++ND I EIGA++ ++  +    F   + P  R    +  KL GIT+
Sbjct: 381 KYIVFDLETTGFSNRNDAITEIGAIK-VENGEIVEEFSQLINPE-RPIPEKIQKLTGITN 438

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + DKP+ S +  +F DF   +++  +AHN+ FD GF+  +    N         IDT+
Sbjct: 439 EMVIDKPTISEVLPKFLDFC--KDSILVAHNSDFDTGFVREKASENNLP--YDFDAIDTV 494

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            ++R   P  + + LN++ K   +++ +   H A+ D+   + +++  +          K
Sbjct: 495 ILSRLLMPDLKNHKLNTIAKELNVSLENH--HRAVDDATATAQIFLNFISK-------LK 545

Query: 187 TNEDRFFKEEKKTVPNISLLK 207
             E   F E  + + +I   K
Sbjct: 546 AMEIENFNEINEKIKSIDTSK 566


>gi|297588407|ref|ZP_06947050.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
 gi|297573780|gb|EFH92501.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
          Length = 1421

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 9/181 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL +  ++I EIGAV+++D    +  F   + P       +  +L  IT+E
Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDNQIVDE-FNQLINPEI-PIPEKITELTSITNE 459

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  EF  F    +   IAHNA FD+GFI      +  +P+     IDTL+
Sbjct: 460 MVKDMPKIEEVLPEFLKFVG--DCTLIAHNADFDMGFIKKNCLDLRINPI--RTYIDTLA 515

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            AR   P  + + L++L K+Y + + +   H A  D+    +V+I M+    +    F  
Sbjct: 516 FARALEPHLKNHKLDTLTKKYNVNLFNH--HRACDDARATGEVFICMVKDLEKRGVKFDI 573

Query: 188 N 188
           N
Sbjct: 574 N 574


>gi|269120698|ref|YP_003308875.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268614576|gb|ACZ08944.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC
           33386]
          Length = 1421

 Score =  184 bits (468), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 96/176 (54%), Gaps = 11/176 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI + +   I+FDIETTG D   D+IIEIGAV+L   +  +R F  F+ P       E +
Sbjct: 393 MIEQEE--YIIFDIETTGFDPYKDKIIEIGAVKLKGRNIIDR-FSAFVNPE-VPIPEEII 448

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           KL  ITD+ +KD     ++   F +F    +   +AHNAKFDVGF+  + +++  + L  
Sbjct: 449 KLTNITDDMVKDAELIDTVLPRFLEFCG--DCTMVAHNAKFDVGFLTQKARQLELEFLP- 505

Query: 121 SRIIDTLSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +IDTL  AR       R +L +L   + I++ +   H A+ D+   + ++IKM+
Sbjct: 506 -SVIDTLYWARVLITDLKRFNLKALANYFNISLDNH--HRAVDDAEATASIFIKML 558


>gi|189183653|ref|YP_001937438.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180424|dbj|BAG40204.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
           Ikeda]
          Length = 222

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 88/230 (38%), Positives = 128/230 (55%), Gaps = 12/230 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            RKIV D ET+GLD K   RIIEIGAVEL  D ++   TF  ++ P  R  S EA K+HG
Sbjct: 2   QRKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPE-RDISKEAYKVHG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ++ +FL DKP F  I  EF  F +   A+ I HNA FD+ F+N+EL RI K  +  + +I
Sbjct: 61  LSRDFLSDKPKFREIVDEFLQFID--GAQLIMHNANFDMQFLNSELFRIRKSAIPNTCVI 118

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR++ P  R +L++LC ++ I  S R  HGAL D+ LL+ VY +MM G   +   
Sbjct: 119 DTLTLARKRFPKERVNLDALCYKFRIDTSDRHLHGALKDAKLLALVYGRMMRGMQVVLLD 178

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
              +          T  N +       +    T +E+ +H + +  + K+
Sbjct: 179 DTKHNKEIIISNCATNINNT-------VVVEPTCDEIIQHQQLLSKIHKH 221


>gi|331090692|ref|ZP_08339541.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400106|gb|EGG79757.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 1487

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 9/197 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  S  D+IIEIGAV++ +    +R +  F+ P       E  KL  ITD 
Sbjct: 452 FVVFDIETTGFSSVKDKIIEIGAVKVENGKIVSR-YSTFVNPE-VPIPFEITKLTSITDA 509

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   ++  EF ++    +A  +AHNA FDVGFI    +R+  +    S  +DT++
Sbjct: 510 MVIDAPKIETVLPEFMEYVG--DAVLVAHNAGFDVGFIEENCRRLGMERKLTS--VDTVA 565

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR   P+ SR  LN + K  GI++ +   H A+ D+   +++++K +    +       
Sbjct: 566 LARVLLPTLSRYKLNIVAKTLGISLENH--HRAVDDAGATAEIFVKFVEMLKEREITTLK 623

Query: 188 NEDRFFKEEKKTVPNIS 204
             + F       +  + 
Sbjct: 624 GVNEFGAMNPDAIRKMP 640


>gi|256750786|ref|ZP_05491671.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750369|gb|EEU63388.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 1407

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 106/201 (52%), Gaps = 9/201 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +    VFDIETTGL + ND IIEIGAV++ +    + TF+ F+ P     S    KL GI
Sbjct: 391 EDEFTVFDIETTGLSNINDEIIEIGAVKIKEGKIID-TFETFVNPKI-PISSFITKLTGI 448

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +KD PS   I  +F +F    N+  +AHNA FDV FI ++ ++ N +    + ++D
Sbjct: 449 DESMVKDAPSIEEILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLD 504

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           TL ++R  +   +N  L++L +   + + H   H A+ D+   ++++IK +    ++   
Sbjct: 505 TLELSRHLYKDLKNYKLDTLAEHLQVKLEHH--HRAVDDAMATAEIFIKTIDRLKELGVE 562

Query: 185 FKTNEDRFFKEEKKTVPNISL 205
              + +   KE +  +  + +
Sbjct: 563 KVKDINAILKESEVDIRKLPV 583


>gi|167037626|ref|YP_001665204.1| DNA polymerase III PolC [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320116041|ref|YP_004186200.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856460|gb|ABY94868.1| DNA polymerase III, alpha subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929132|gb|ADV79817.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 1407

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 105/201 (52%), Gaps = 9/201 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +    VFDIETTGL + ND IIEIGAV++ +    + TF+ F+ P     S    KL GI
Sbjct: 391 EDEFTVFDIETTGLSNINDEIIEIGAVKIKEGKIID-TFETFVNPKI-PISSFITKLTGI 448

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +KD PS   I  +F +F    N+  +AHNA FDV FI ++ ++ N +    + ++D
Sbjct: 449 DESMVKDAPSIEEILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLD 504

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           TL ++R  +   +N  L++L     + + H   H A+ D+   ++++IK +    ++   
Sbjct: 505 TLELSRHLYKDLKNYKLDTLADHLQVKLEHH--HRAVDDAMATAEIFIKTIDRLKELGVE 562

Query: 185 FKTNEDRFFKEEKKTVPNISL 205
              + +   KE +  +  + +
Sbjct: 563 KVKDINAILKESEVDIRKLPV 583


>gi|167759386|ref|ZP_02431513.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704]
 gi|167662943|gb|EDS07073.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704]
          Length = 1499

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 97/197 (49%), Gaps = 9/197 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG     D+IIEIGAV++ +   T R F  F+ P          +L  ITD+
Sbjct: 462 YVVFDLETTGFSPIKDKIIEIGAVKVENGKITER-FSTFVNPKI-PIPFRITQLTSITDQ 519

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   ++  +F +F    +A  +AHNA FDVGFI    +   +D +     +DT++
Sbjct: 520 MVMDAPDIDTVLPQFLEFIG--DAVLVAHNASFDVGFIEQNCR--YQDIVPNFTSVDTVA 575

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR   P+ S+  LN +     I++ +   H A+ D+   +++++K +    + N     
Sbjct: 576 MARILLPTLSKFKLNVVANALHISLENH--HRAVDDAGATAEIFVKFVEMLKERNINDLA 633

Query: 188 NEDRFFKEEKKTVPNIS 204
             ++F       +  + 
Sbjct: 634 RLNQFGSNNADAIKKLP 650


>gi|210622608|ref|ZP_03293268.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
 gi|210154109|gb|EEA85115.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
          Length = 1426

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 94/169 (55%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  + ND+I EIGAV++ D+   +R F   + P  +  S    +L GIT+E
Sbjct: 412 FVVFDLETTGFSNINDKITEIGAVKIRDFEIVDR-FSELVNPE-KDISYRVQELTGITNE 469

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KDKP+   I  +F +F  +     +AHNA FD GFI  + +    +    ++ +DTL 
Sbjct: 470 MVKDKPTIEEILPKFMEFVGDD--VLVAHNADFDTGFIMQKCKEQGLE--YKNKKVDTLM 525

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +AR   P+  R  L+ + K  G+ + +   H A+ D+   ++++IK + 
Sbjct: 526 LARIMLPNLKRYKLDKVAKEVGVQLLNH--HRAVDDAEATANIFIKFLG 572


>gi|326389440|ref|ZP_08211007.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994445|gb|EGD52870.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 1407

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 105/201 (52%), Gaps = 9/201 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +    VFDIETTGL + ND IIEIGAV++ +    + TF+ F+ P     S    KL GI
Sbjct: 391 EDEFTVFDIETTGLSNINDEIIEIGAVKIKEGKIID-TFETFVNPKI-PISSFITKLTGI 448

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +KD PS   I  +F +F    N+  +AHNA FDV FI ++ ++ N +    + ++D
Sbjct: 449 DESMVKDAPSIEEILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLD 504

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           TL ++R  +   +N  L++L     + + H   H A+ D+   ++++IK +    ++   
Sbjct: 505 TLELSRHLYKDLKNYKLDTLADHLQVKLEHH--HRAVDDAMATAEIFIKTIDRLKELGVE 562

Query: 185 FKTNEDRFFKEEKKTVPNISL 205
              + +   KE +  +  + +
Sbjct: 563 KVKDINAILKESEVDIRKLPV 583


>gi|154502558|ref|ZP_02039618.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149]
 gi|153796750|gb|EDN79170.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149]
          Length = 1503

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 94/176 (53%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTG  +  D+IIEIGAV++ D +   + F  F+ P  R    E  +L  ITDE
Sbjct: 467 YIVFDIETTGFSAIKDKIIEIGAVKVKDGAIVEK-FSTFVNPK-RPIPFEITQLTSITDE 524

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   S+  EF +F    +   +AHNA FDVGFI    +    +P      +DT++
Sbjct: 525 MVLDAPDIESVLPEFLEFVG--DGVLVAHNAGFDVGFIEQNCRYQEIEP--DFVSVDTVA 580

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +AR   P+ S+  LN + K  GI++ +   H A+ D+   +++++K +      N 
Sbjct: 581 LARVLLPTLSKYKLNIVAKALGISLENH--HRAVDDAGATAEIFVKFVEMLKDRNI 634


>gi|167040287|ref|YP_001663272.1| DNA polymerase III PolC [Thermoanaerobacter sp. X514]
 gi|300914371|ref|ZP_07131687.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307724393|ref|YP_003904144.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513]
 gi|166854527|gb|ABY92936.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514]
 gi|300889306|gb|EFK84452.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307581454|gb|ADN54853.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513]
          Length = 1407

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 106/201 (52%), Gaps = 9/201 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +    VFDIETTGL + ND IIEIGAV++ +    + TF+ F+ P     S    KL GI
Sbjct: 391 EDEFTVFDIETTGLSNINDEIIEIGAVKIKEGKIID-TFETFVNPKI-PISSFITKLTGI 448

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +KD PS   I  +F +F    N+  +AHNA FDV FI ++ ++ N +    + ++D
Sbjct: 449 DESMVKDAPSIEEILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLD 504

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           TL ++R  +   +N  L++L +   + + H   H A+ D+   ++++IK +    ++   
Sbjct: 505 TLELSRHLYKDLKNYKLDTLAEHLQVKLEHH--HRAVDDAMATAEIFIKTIDRLKELGVE 562

Query: 185 FKTNEDRFFKEEKKTVPNISL 205
              + +   KE +  +  + +
Sbjct: 563 KVKDINAILKESEVDIRKLPV 583


>gi|143342|gb|AAA22666.1| polymerase III [Bacillus subtilis]
          Length = 1437

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 102/185 (55%), Gaps = 9/185 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+ R  S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P    +  +F     +     +AHNA FD+GF+N   +++ +     + +IDTL 
Sbjct: 479 MLQDAPDVVDVIRDFRVRIGDD--ILVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFGF 185
           + R  +P    + LN+LCK++ I ++    H A+ D+   + + +KM+   ++  I +  
Sbjct: 537 LGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKMLKDAAEKGIQYHD 594

Query: 186 KTNED 190
           + NE+
Sbjct: 595 ELNEN 599


>gi|332982461|ref|YP_004463902.1| DNA polymerase III catalytic subunit, PolC type [Mahella
           australiensis 50-1 BON]
 gi|332700139|gb|AEE97080.1| DNA polymerase III catalytic subunit, PolC type [Mahella
           australiensis 50-1 BON]
          Length = 1427

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 9/188 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTGL++  D+IIEIGAV + D    +  F  F+ P+     P  + L GITD+ 
Sbjct: 416 VVLDIETTGLNAGTDKIIEIGAVRIKDGKYKDE-FSSFINPH-VPIPPSIVNLTGITDDM 473

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P    +   F +F    +A  +AHNA+FD+GFI    Q+ N    +P  ++DTL++
Sbjct: 474 VSNAPDEGDVLQRFMEFAG--DAVLVAHNAQFDMGFIRQHGQKYNLKFANP--VLDTLTL 529

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           AR+     ++  L++L     I + +   H A+ D+   +++  + M   S++   F ++
Sbjct: 530 ARQLFKGLKHYKLDTLAHHLHIDMDNH--HRAVDDARTAAEILFRCMDKLSEMGCQFLSD 587

Query: 189 EDRFFKEE 196
            +R F   
Sbjct: 588 LNRVFGSS 595


>gi|289578391|ref|YP_003477018.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289528104|gb|ADD02456.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9]
          Length = 1406

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 9/198 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFDIETTGL + ND IIEIGAV++ +    + TF+ F+ P     S    KL GI + 
Sbjct: 393 FTVFDIETTGLSNINDEIIEIGAVKIKEGKIID-TFETFVNPKI-PISSFITKLTGIDES 450

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD PS   I  +F +F    N+  +AHNA FDV FI ++ ++ N +    + ++DTL 
Sbjct: 451 MVKDAPSIEEILPKFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLNV--NNTVLDTLE 506

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +   +N  L++L +   + + H   H A+ D+   ++++IK +    ++      
Sbjct: 507 LSRHLYKDLKNYKLDTLAEHLQVKLEHH--HRAVDDARATAEIFIKTIDRLKELGVKKVK 564

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +   +E +  +  + +
Sbjct: 565 DINDILRESEVDIKKLPV 582


>gi|297544667|ref|YP_003676969.1| DNA polymerase III subunit alpha [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842442|gb|ADH60958.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 1406

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 9/198 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFDIETTGL + ND IIEIGAV++ +    + TF+ F+ P     S    KL GI + 
Sbjct: 393 FTVFDIETTGLSNINDEIIEIGAVKIKEGKIID-TFETFVNPKI-PISSFITKLTGIDES 450

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD PS   I  +F +F    N+  +AHNA FDV FI ++ ++ N +    + ++DTL 
Sbjct: 451 MVKDAPSIEEILPKFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLNV--NNTVLDTLE 506

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +   +N  L++L +   + + H   H A+ D+   ++++IK +    ++      
Sbjct: 507 LSRHLYKDLKNYKLDTLAEHLQVKLEHH--HRAVDDARATAEIFIKTIDRLKELGVKKVK 564

Query: 188 NEDRFFKEEKKTVPNISL 205
           + +   +E +  +  + +
Sbjct: 565 DINDILRESEVDIKKLPV 582


>gi|299534745|ref|ZP_07048075.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
 gi|298729833|gb|EFI70378.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
          Length = 1443

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 97/181 (53%), Gaps = 8/181 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++ D    ++ ++ F  P+    S   ++L GITD+
Sbjct: 428 YVVFDVETTGLSTAYDTIIELAAVKIKDGQVIDK-YESFANPH-HPLSATTIELTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P    +  EF  F    +A  +AHNA FD+GF+    ++   +      +IDTL 
Sbjct: 486 MVRNAPEVEQVIKEFHAFIG--DAIVVAHNASFDIGFLYTGYKKFGLE-DTVHPVIDTLE 542

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR  +P    + LN+LCK++ I ++    H A+ D+     + ++++    ++   +  
Sbjct: 543 LARLLYPTMKNHRLNTLCKKFNIELTQH--HRAIYDTEATGYLLLQLLKDADELAIKYHD 600

Query: 188 N 188
           +
Sbjct: 601 D 601


>gi|310658999|ref|YP_003936720.1| DNA polymerase III polc [Clostridium sticklandii DSM 519]
 gi|308825777|emb|CBH21815.1| DNA polymerase III PolC [Clostridium sticklandii]
          Length = 1417

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 16/225 (7%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +VFDIETTG  + +D I EIGAV++ +    + +F   + P+      +  +L GI
Sbjct: 403 EDEYVVFDIETTGFSNTSDEITEIGAVKIRNKEIID-SFGELINPH-MPIPLKVQELTGI 460

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T++ +KDKPS   +   F +F     +  +AHN+ FD+GFI A+ +R+N      ++ ID
Sbjct: 461 TNDLIKDKPSIDEVLPRFLEFVGS--SILVAHNSDFDMGFIRAKAKRLNLAF--ENKDID 516

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           TL ++R   P+  R+ LN +    GI++ +   H A+ D+   + V+IK M      +  
Sbjct: 517 TLKLSRILLPNLKRHKLNLITNHLGISLENH--HRAVDDAKATALVFIKFMEMLIDKDIN 574

Query: 185 -FKTNEDRFFKEEKKTVP--NISLLKRD----KPLFTRITKEELD 222
            F+   D+  K + K++P  +I+++ RD    K L+  I+   +D
Sbjct: 575 TFEMVNDKLGKLDYKSIPSNHITIIARDYTGLKNLYKLISASHID 619


>gi|261419458|ref|YP_003253140.1| DNA polymerase III subunit chi [Geobacillus sp. Y412MC61]
 gi|319766273|ref|YP_004131774.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52]
 gi|261375915|gb|ACX78658.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61]
 gi|317111139|gb|ADU93631.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52]
          Length = 1444

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 104/185 (56%), Gaps = 8/185 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R ++   +VFD+ETTGL +  + IIE+ AV++ D    +R F  F  P G   S   ++L
Sbjct: 423 RLSEETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANP-GHPLSVTTMEL 480

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GITDE +KD P    + + F D+    +A  +AHNA FD+GF+NA L R+ +  +  + 
Sbjct: 481 TGITDEMVKDAPKPDEVLARFVDWAG--DATLVAHNASFDIGFLNAGLARMGRGKIA-NP 537

Query: 123 IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +IDTL +AR  +P  +N  LN+LCK++ I ++    H A+ D+     + ++++    + 
Sbjct: 538 VIDTLELARFLYPDLKNHRLNTLCKKFDIELTQH--HRAIYDAEATGHLLMRLLKEAEER 595

Query: 182 NFGFK 186
              F 
Sbjct: 596 GILFH 600


>gi|223044235|ref|ZP_03614272.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus capitis SK14]
 gi|222442385|gb|EEE48493.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus capitis SK14]
          Length = 1438

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 111/204 (54%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+   +++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMIQQMTELGVHNH- 593

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 594 ------NEINKKLTNEDAYKRARP 611


>gi|313905074|ref|ZP_07838444.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
 gi|313470144|gb|EFR65476.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
          Length = 1536

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/214 (28%), Positives = 101/214 (47%), Gaps = 12/214 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL +   +IIEIGAV  +++ +    F  F+ P       +  +L  ITD 
Sbjct: 502 YVVFDIETTGLSNLTCKIIEIGAVR-VEHGEVVSRFSEFINPE-VPIPFKITELTSITDA 559

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P    I  +F +F    +A  +AHNA FD GFI  E +R   D       +DT++
Sbjct: 560 MVEDAPVIEEILPKFREFCG--DAVLVAHNADFDTGFIKMECERQKLDW--EFTYVDTVA 615

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P  SR  L+++ K  G+ + H   H A+ D+   + +++K +    + N     
Sbjct: 616 MAQMLLPGLSRFKLDTVAKAVGVPLEHH--HRAVDDAECTAWIFVKFVEMLKERNI---L 670

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           + D   KE       I  +K    +     +E  
Sbjct: 671 DLDALNKEGSVNQNAIRKMKSHHVIILAKNEEGR 704


>gi|314936575|ref|ZP_07843922.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655194|gb|EFS18939.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis subsp. hominis C80]
          Length = 1438

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 111/204 (54%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  P+  K S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDK-FERFSNPH-EKLSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVANH- 593

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                 K+  K + N    KR +P
Sbjct: 594 ------KDINKKLSNEDAYKRARP 611


>gi|228475024|ref|ZP_04059752.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis SK119]
 gi|228271009|gb|EEK12397.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis SK119]
          Length = 1438

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 111/204 (54%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  PN  K S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDK-FERFSNPN-EKLSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVANH- 593

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                 K+  K + N    KR +P
Sbjct: 594 ------KDINKKLSNEDAYKRARP 611


>gi|317495743|ref|ZP_07954108.1| DNA polymerase III [Gemella moribillum M424]
 gi|316914196|gb|EFV35677.1| DNA polymerase III [Gemella moribillum M424]
          Length = 1446

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 108/183 (59%), Gaps = 7/183 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++  +   +VFD+ETTGL ++ DR+IEI AV++ + ++ + +F+ ++ P  R  S    +
Sbjct: 419 LKLREATYVVFDVETTGLSAERDRLIEIAAVKVKNGAEID-SFESYINPE-RPISELITR 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITD+ ++D P    + ++F+++ +E +   +AHNAKFD+GFI+   +R+  +    +
Sbjct: 477 LTSITDDDVRDAPVEKEVMTDFYNWLDEDD-ILVAHNAKFDLGFIDKSFERLGLEN-KNN 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             IDTL I+R ++    R+ L++L K Y + +     H A+ D+   ++++IKM+     
Sbjct: 535 ASIDTLFISRAENKEAKRHGLSNLAKMYKVRLVQH--HRAIYDTKATAEIFIKMLNQLYA 592

Query: 181 INF 183
           +  
Sbjct: 593 LGI 595


>gi|153814386|ref|ZP_01967054.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
 gi|145848782|gb|EDK25700.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
          Length = 1459

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 9/197 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTG  S  D IIEIGAV++ D   T+R F  F+ P  R    E   L  ITDE
Sbjct: 422 YIVFDIETTGFSSIKDAIIEIGAVKVTDGKITDR-FSTFVNPK-RPIPFEITNLTSITDE 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +  +F +F    +   +AHNA FDVGFI    + +     D    +DT++
Sbjct: 480 MVMDSPTIDVVLPQFLEFAG--DGVLVAHNAGFDVGFIEQNCRSLGLS--DEFVYLDTVA 535

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR   P+ S+  LN + K   I++ +   H A+ D+   +++++K      +   G   
Sbjct: 536 LARVLLPTLSKYKLNIVAKALNISLENH--HRAVDDAEATAEIFVKFTEMLKKDQVGTLK 593

Query: 188 NEDRFFKEEKKTVPNIS 204
             +R+       +  + 
Sbjct: 594 EVNRYGDRNVNAIRKMP 610


>gi|118602424|ref|YP_903639.1| DNA polymerase III, epsilon subunit [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567363|gb|ABL02168.1| DNA polymerase III, epsilon subunit [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 222

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 127/229 (55%), Gaps = 14/229 (6%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGI 65
           R IV D ETTG++  +  RIIEIG  E++D   T N  +  ++ P+  +N  +++++HGI
Sbjct: 3   RLIVLDTETTGIEPSEGHRIIEIGCTEIVDRQITENNEYHEYIQPS--RNVGDSVRIHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRI 123
           TD+FL +KP F +I   F  +   + A  I HNA FD+GF+N EL+ I  D    D   I
Sbjct: 61  TDKFLTNKPKFKAIVKTFLTYI--EGATLIIHNAPFDLGFLNHELKLIGIDERIEDKCNI 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-N 182
           ID+L +++++ P + ++L++LC+R+ I  S R+ HGALLD+ +L+ VY+ M  G S + N
Sbjct: 119 IDSLELSKQQRPGTLHNLDALCRRFEINSSARTVHGALLDAKILAQVYLAMTGGQSTLFN 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
                NE        +    I  +K          K+EL  H    + +
Sbjct: 179 NEQTINEQANTNNIIRVERAIGKIK-----VVYANKQELAAHASYFEKI 222


>gi|289550944|ref|YP_003471848.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658446|ref|ZP_07911318.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
 gi|289180476|gb|ADC87721.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496775|gb|EFU85098.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
          Length = 1438

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 112/204 (54%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  P+ +K S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDQIIELAAVKVYDGEIIDK-FERFSNPH-QKLSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +RI   P   + +IDTL 
Sbjct: 480 MLTDAPEIDEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERIGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMLQQMKELGVSNH- 593

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                 K+  K + N    KR +P
Sbjct: 594 ------KDINKKLSNEDAYKRARP 611


>gi|268316801|ref|YP_003290520.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252]
 gi|262334335|gb|ACY48132.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252]
          Length = 565

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 104/236 (44%), Gaps = 18/236 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++ + +  +V D ETTG     DRIIE+ AV  +   +    F   + P GR   P   +
Sbjct: 1   MQLDAVSFVVVDTETTGSGPA-DRIIELAAVR-VQGGRIVERFATLINP-GRSVPPFITR 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT   L  +PS   +  +F DF    +   +AHN  FD   + AELQRI       +
Sbjct: 58  LTGITTAMLVGRPSADEVLPDFLDFLG--DGVLVAHNLAFDRKMLEAELQRIGLAW-PGN 114

Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             + TL +ARR  P      L+ L + Y I + +R  H AL D+   + V ++++    +
Sbjct: 115 PALCTLRLARRLLPGLPAKGLDGLIRFYQIPVENR--HRALGDAEATAHVLLRLLEEARR 172

Query: 181 INFGFKTNE------DRFFKEEKKTVPNISLLKRDKPLFTRITKEEL--DEHDKTI 228
             +G  T E       + + + K   P + L +   P         L  DEH + +
Sbjct: 173 -QYGIDTLEALLTFQQQRYPQYKNASPLVRLRETLLPRLPEAPGVYLFRDEHGRLL 227


>gi|225024402|ref|ZP_03713594.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC
           23834]
 gi|224942783|gb|EEG23992.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC
           23834]
          Length = 240

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 79/241 (32%), Positives = 120/241 (49%), Gaps = 14/241 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +R+I+ D ETTG    ++DR+IE   +E++D   T     +++ P  R    EA K+HGI
Sbjct: 4   LRQIILDTETTGFYYDRDDRLIEFAGLEMIDRRLTGNYLHLYVHPE-RDIPEEAAKVHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123
           T + L+ KP F+ I  +  DF      E + HNA FDVGF+NAE +R     ++   + +
Sbjct: 63  TLDQLEGKPKFAEIGQQIADFIA--GTELVIHNAPFDVGFLNAEFRRAGLPSVEELTANV 120

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +DTL +AR  +P  +N L++LC R  +  S R  HGAL+D  LLS+VY+ M      +  
Sbjct: 121 VDTLVMARAMYPGQKNSLDALCTRLEVDRSKRVFHGALIDCELLSEVYLGMTRSQFSLAD 180

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKN----AIWD 238
            F   E             I+  +R   L       EE   H+  +  L K     +IW 
Sbjct: 181 QFAEEESAEADAPAVV---IAPTERPAQLKVLAANAEENAAHEAYLDELDKKVEGGSIWR 237

Query: 239 R 239
           +
Sbjct: 238 K 238


>gi|57866746|ref|YP_188413.1| DNA polymerase III PolC [Staphylococcus epidermidis RP62A]
 gi|293366772|ref|ZP_06613448.1| DNA polymerase III PolC [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|57637404|gb|AAW54192.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis RP62A]
 gi|291319073|gb|EFE59443.1| DNA polymerase III PolC [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 1436

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 478 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVNNHL 592

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 593 -------EINKKLTNEDAYKRARP 609


>gi|329724322|gb|EGG60834.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU144]
          Length = 1438

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVNNHL 594

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 595 -------EINKKLTNEDAYKRARP 611


>gi|73919252|sp|Q5HPS7|DPO3_STAEQ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|329736245|gb|EGG72517.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU028]
 gi|329736547|gb|EGG72813.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU045]
          Length = 1438

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVNNHL 594

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 595 -------EINKKLTNEDAYKRARP 611


>gi|282876304|ref|ZP_06285171.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis SK135]
 gi|281295329|gb|EFA87856.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis SK135]
          Length = 1438

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVNNHL 594

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 595 -------EINKKLTNEDAYKRARP 611


>gi|27467858|ref|NP_764495.1| DNA polymerase III PolC [Staphylococcus epidermidis ATCC 12228]
 gi|32469713|sp|Q8CPG6|DPO3_STAES RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|27315403|gb|AAO04537.1|AE016747_34 DNA polymerase III, alpha chain PolC-type [Staphylococcus
           epidermidis ATCC 12228]
          Length = 1442

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 484 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 540

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 541 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVNNHL 598

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 599 -------EINKKLTNEDAYKRARP 615


>gi|251810695|ref|ZP_04825168.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805855|gb|EES58512.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
          Length = 1442

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 484 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 540

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 541 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVNNHL 598

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 599 -------EINKKLTNEDAYKRARP 615


>gi|295427751|ref|ZP_06820383.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128109|gb|EFG57743.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 1436

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 478 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 588

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 589 ---LNHNEINKKLSNEDAYKRARP 609


>gi|49483427|ref|YP_040651.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282903819|ref|ZP_06311707.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905582|ref|ZP_06313437.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908557|ref|ZP_06316387.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283958007|ref|ZP_06375458.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|297591291|ref|ZP_06949929.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|56748683|sp|Q6GHH1|DPO3_STAAR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|49241556|emb|CAG40242.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282327619|gb|EFB57902.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330874|gb|EFB60388.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595437|gb|EFC00401.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C160]
 gi|283790156|gb|EFC28973.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|297576177|gb|EFH94893.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|315194152|gb|EFU24545.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS00]
          Length = 1438

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611


>gi|282918963|ref|ZP_06326698.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C427]
 gi|282316773|gb|EFB47147.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C427]
          Length = 1438

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611


>gi|283470479|emb|CAQ49690.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 1438

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611


>gi|242242547|ref|ZP_04796992.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
 gi|242233974|gb|EES36286.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
          Length = 1442

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 484 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 540

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 541 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVNNHL 598

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 599 -------EINKKLTNEDAYKRARP 615


>gi|320140919|gb|EFW32766.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 1436

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 478 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 588

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 589 ---LNHNEINKKLSNEDAYKRARP 609


>gi|269202881|ref|YP_003282150.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|295406201|ref|ZP_06816008.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297244429|ref|ZP_06928312.1| DNA polymerase III [Staphylococcus aureus A8796]
 gi|262075171|gb|ACY11144.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|294968789|gb|EFG44811.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297178459|gb|EFH37705.1| DNA polymerase III [Staphylococcus aureus A8796]
          Length = 1436

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 478 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 588

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 589 ---LNHNEINKKLSNEDAYKRARP 609


>gi|295396947|ref|ZP_06807069.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
 gi|294974800|gb|EFG50505.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
          Length = 1439

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 11/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   +   +VFD+ETTGL +  D IIE+ AV++ + +  + TF+ F+ P GR  S   + 
Sbjct: 416 IELKEATYVVFDVETTGLSAIYDNIIELAAVKMQNGNVID-TFEEFINP-GRPLSATIID 473

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  L +  +   + S+F ++    +A ++AHNA FD+GFI+    R   +    +
Sbjct: 474 LTGITDAMLANTRTEKEVISDFREWVG--DAIFVAHNASFDMGFIDTAYNRHGFEK-SHN 530

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSH---LLSDVYIKMMVG 177
            +IDTL ++R  HP+ + + LN+L KRY + +     H A+ D+     L+ ++IK    
Sbjct: 531 AVIDTLEMSRFLHPNLKSHRLNTLAKRYNVALEQH--HRAVYDAETTGALAWIFIKEAAA 588

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNI 203
             +I +  + N+D    +  K     
Sbjct: 589 DHEIFYHDELNKDVGKGDAYKQGRPF 614


>gi|297584076|ref|YP_003699856.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10]
 gi|297142533|gb|ADH99290.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10]
          Length = 1433

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 102/200 (51%), Gaps = 10/200 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +VFD+ETTGL +  + IIE+ AV++      +R F+ F  P+    SP  + L GI
Sbjct: 416 EDTYVVFDVETTGLSAVYNTIIELAAVKVQGGEIIDR-FESFANPH-EPLSPTIIDLTGI 473

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+ + D P    +  +F  +    N   +AHNA FD+ F++A  Q+   D    + +ID
Sbjct: 474 TDDMVADAPEIHDVLKDFKAWCG--NDILVAHNAAFDMAFLDAGYQKAGMDKAA-NPVID 530

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--IN 182
           TL + R  +P+ +N  LN+LCK++ I +   S H A+ D+     +  KM+    +  I 
Sbjct: 531 TLEMGRMLYPTFKNYRLNTLCKKFNIELV--SHHRAIYDAEATGHLLWKMVRDAVEKGIT 588

Query: 183 FGFKTNEDRFFKEEKKTVPN 202
                N+     + KK  PN
Sbjct: 589 THSALNDQSSPDDYKKQRPN 608


>gi|331001986|ref|ZP_08325506.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411782|gb|EGG91187.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 1480

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 9/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +      IVFDIETTG  +KND I EIGAV+++     +R F  F+ P  R    +  
Sbjct: 448 MDKTLDDGFIVFDIETTGFSAKNDAITEIGAVKVVKGEIVDR-FSTFVNP-RRPIPFKIE 505

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L  I+D  + + P    I  +F DF   ++   +AHNA FD GFI    ++INK+    
Sbjct: 506 ELTHISDAMVMNAPFIEDILPKFLDFC--EDYIIVAHNAGFDTGFIRENAKKINKE--YN 561

Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             IIDT+++AR   P   R  L+++CK   I++     H A+ D+   + ++++ +
Sbjct: 562 PSIIDTVAMARLLLPELNRFKLDTVCKALNISLEGH--HRAVNDAEATAQIWVEFI 615


>gi|329733603|gb|EGG69931.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 1438

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611


>gi|322382351|ref|ZP_08056258.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153704|gb|EFX46079.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 1437

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 64/202 (31%), Positives = 105/202 (51%), Gaps = 9/202 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I+  +   +VFDIETTGL   N++IIEI  V++ D  +  R +  F+ P+  K      +
Sbjct: 416 IKLKEATYVVFDIETTGLSVINNKIIEIAGVKMKDGKEIGR-YTTFIDPH-EKIPYNIQQ 473

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE ++  P  +    +F +F    +A  +AHNA+FD+GFI A L+ I    L P+
Sbjct: 474 LTNITDEMVQGAPDIAEELPKFVEFVG--DAVLVAHNARFDMGFIQANLKNIGMPEL-PN 530

Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DTL +AR   PS +N  LN+L  ++ +++ +   H A+ D+  L  +   ++    +
Sbjct: 531 PSLDTLELARLLFPSLKNHRLNTLADKFKVSLENH--HRAIDDTVALMHILNHLLQEAEE 588

Query: 181 INF-GFKTNEDRFFKEEKKTVP 201
            N        D   K+ + T P
Sbjct: 589 QNLTQLNRLNDHVGKDLRNTRP 610


>gi|269940755|emb|CBI49137.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 1438

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611


>gi|57651834|ref|YP_186140.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus COL]
 gi|87161645|ref|YP_493854.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194974|ref|YP_499774.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|161509430|ref|YP_001575089.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294848260|ref|ZP_06789007.1| DNA polymerase III [Staphylococcus aureus A9754]
 gi|56749834|sp|P68852|DPO3_STAAW RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|110808208|sp|Q2G1Z8|DPO3_STAA8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123486180|sp|Q2FHH4|DPO3_STAA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|12082347|dbj|BAB20885.1| PolC [Staphylococcus aureus]
 gi|57286020|gb|AAW38114.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127619|gb|ABD22133.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202532|gb|ABD30342.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|160368239|gb|ABX29210.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|294825060|gb|EFG41482.1| DNA polymerase III [Staphylococcus aureus A9754]
          Length = 1436

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 478 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 588

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 589 ---LNHNEINKKLSNEDAYKRARP 609


>gi|15924254|ref|NP_371788.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926847|ref|NP_374380.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus N315]
 gi|148267754|ref|YP_001246697.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH9]
 gi|150393813|ref|YP_001316488.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH1]
 gi|156979585|ref|YP_001441844.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315620|ref|ZP_04838833.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006051|ref|ZP_05144652.2| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795680|ref|ZP_05644659.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|258416083|ref|ZP_05682351.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|258421666|ref|ZP_05684590.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
           A9719]
 gi|258434822|ref|ZP_05688896.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A9299]
 gi|258444602|ref|ZP_05692931.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A8115]
 gi|258447565|ref|ZP_05695709.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6300]
 gi|258449407|ref|ZP_05697510.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6224]
 gi|258454786|ref|ZP_05702750.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5937]
 gi|282892752|ref|ZP_06300987.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A8117]
 gi|282927606|ref|ZP_06335222.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A10102]
 gi|296274822|ref|ZP_06857329.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MR1]
 gi|54036992|sp|P63982|DPO3_STAAN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040953|sp|P63981|DPO3_STAAM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217451|sp|A7X1P4|DPO3_STAA1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13701064|dbj|BAB42359.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247034|dbj|BAB57426.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147740823|gb|ABQ49121.1| DNA polymerase III catalytic subunit, PolC type [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946265|gb|ABR52201.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721720|dbj|BAF78137.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257789652|gb|EEV27992.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|257839231|gb|EEV63707.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|257842352|gb|EEV66777.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
           A9719]
 gi|257849183|gb|EEV73165.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A9299]
 gi|257850095|gb|EEV74048.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A8115]
 gi|257853756|gb|EEV76715.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6300]
 gi|257857395|gb|EEV80293.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6224]
 gi|257863169|gb|EEV85933.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5937]
 gi|282590609|gb|EFB95686.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A10102]
 gi|282764749|gb|EFC04874.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A8117]
 gi|285816946|gb|ADC37433.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981]
 gi|312829658|emb|CBX34500.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315131058|gb|EFT87042.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727084|gb|EGG63540.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21172]
          Length = 1438

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611


>gi|323441043|gb|EGA98750.1| DNA polymerase III PolC [Staphylococcus aureus O11]
          Length = 1436

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 478 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 588

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 589 ---LNHNEINKKLSNEDAYKRARP 609


>gi|319401446|gb|EFV89656.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis FRI909]
          Length = 1438

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVNNHL 594

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 595 -------EINKKLTNEDAYKRARP 611


>gi|257425318|ref|ZP_05601743.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427979|ref|ZP_05604377.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430612|ref|ZP_05606994.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433372|ref|ZP_05609730.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436214|ref|ZP_05612261.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M876]
 gi|282910836|ref|ZP_06318639.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914041|ref|ZP_06321828.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924086|ref|ZP_06331762.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C101]
 gi|293501073|ref|ZP_06666924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510035|ref|ZP_06668743.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M809]
 gi|293526621|ref|ZP_06671306.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257271775|gb|EEV03913.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274820|gb|EEV06307.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278740|gb|EEV09359.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281465|gb|EEV11602.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284496|gb|EEV14616.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M876]
 gi|282314058|gb|EFB44450.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C101]
 gi|282322109|gb|EFB52433.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325441|gb|EFB55750.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|290920693|gb|EFD97756.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291096078|gb|EFE26339.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466979|gb|EFF09497.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M809]
 gi|312438356|gb|ADQ77427.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH60]
          Length = 1438

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611


>gi|258423895|ref|ZP_05686780.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9635]
 gi|257845924|gb|EEV69953.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9635]
          Length = 1438

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611


>gi|21282876|ref|NP_645964.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MW2]
 gi|49486103|ref|YP_043324.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|151221386|ref|YP_001332208.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|221142498|ref|ZP_03566991.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258452563|ref|ZP_05700569.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5948]
 gi|262048156|ref|ZP_06021043.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           D30]
 gi|262051326|ref|ZP_06023549.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           930918-3]
 gi|282920508|ref|ZP_06328229.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9765]
 gi|284024257|ref|ZP_06378655.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus 132]
 gi|297208090|ref|ZP_06924521.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300912171|ref|ZP_07129614.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381172|ref|ZP_07363825.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|56748669|sp|Q6G9U9|DPO3_STAAS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|73919251|sp|Q5HGG7|DPO3_STAAC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|172049022|sp|A6QGG4|DPO3_STAAE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21204315|dbj|BAB95012.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244546|emb|CAG42975.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|150374186|dbj|BAF67446.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|257859781|gb|EEV82623.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5948]
 gi|259160701|gb|EEW45722.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           930918-3]
 gi|259163722|gb|EEW48277.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           D30]
 gi|282594170|gb|EFB99157.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9765]
 gi|296887333|gb|EFH26235.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300886417|gb|EFK81619.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|302751087|gb|ADL65264.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340155|gb|EFM06096.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315198506|gb|EFU28835.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS01]
 gi|329313934|gb|AEB88347.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus T0131]
 gi|329727848|gb|EGG64299.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 1438

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611


>gi|253731883|ref|ZP_04866048.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724293|gb|EES93022.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|320144365|gb|EFW36131.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 1442

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 484 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 540

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 541 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 594

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 595 ---LNHNEINKKLSNEDAYKRARP 615


>gi|126698903|ref|YP_001087800.1| DNA polymerase III PolC-type [Clostridium difficile 630]
 gi|255100324|ref|ZP_05329301.1| DNA polymerase III PolC-type [Clostridium difficile QCD-63q42]
 gi|255306262|ref|ZP_05350434.1| DNA polymerase III PolC-type [Clostridium difficile ATCC 43255]
 gi|115250340|emb|CAJ68162.1| DNA polymerase III PolC-type (PolIII) [Clostridium difficile]
          Length = 1432

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 97/170 (57%), Gaps = 9/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
              +VFDIETTG  + ND+I EIGAV++ ++   +R F   + P  +  S +  +L GIT
Sbjct: 416 QTFVVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGIT 473

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E +KDKP+   +  +F +F    ++  +AHNA+FD GFI+ + +      L  ++ +DT
Sbjct: 474 NELIKDKPTIEEVLPKFMEFVG--DSVLVAHNAEFDTGFISQKCREQGL--LYNNKKVDT 529

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L +AR   P+  R+ LN + K  GI + +   H A+ D+   + ++ K +
Sbjct: 530 LMLARVMLPNLKRHRLNVVAKELGIPLLNH--HRAVDDAEATALIFNKFL 577


>gi|152976184|ref|YP_001375701.1| DNA polymerase III PolC [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152024936|gb|ABS22706.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 1433

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 13/213 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F  +  +     +AHNA FD+GF+N   ++   D    + +IDTL 
Sbjct: 476 MLTDAPEVGEVFKKFQAWMGDH--TLVAHNASFDMGFLNVGFKKCGLDK-PKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR   P  +N  LN+LCK+  I ++    H A+ D+     +  KM+    +  F +  
Sbjct: 533 LARFLFPDMKNHRLNTLCKKLDIELTQH--HRAIYDTEATGYLLAKMLKEVIEKGFEYHD 590

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
             +    +            R   +    T +E
Sbjct: 591 QLNDSMGQGDSYKRG-----RPSHVTLLATSDE 618


>gi|304439997|ref|ZP_07399890.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371489|gb|EFM25102.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 1403

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 102/179 (56%), Gaps = 10/179 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            + +VFDIE+TGL   +D I EIGAV++ D    +R F  F+ P  R    + ++L  IT
Sbjct: 391 QKFVVFDIESTGLSPASDMITEIGAVKIEDGVIVDR-FSRFVNP-MRPIPEKVVELTRIT 448

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E + ++P    +  +F +F    +A  +AHNA+FD  FI  ++ ++      P  ++DT
Sbjct: 449 NEMVANEPPIEVVIKDFVEFIG--DATLVAHNAEFDTAFIRRDMDKVGLKFDFP--VLDT 504

Query: 127 LSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINF 183
           L ++R   +   R +L+++CK+ G+ +     H A+ D+   ++ +IKMM +GGS  +F
Sbjct: 505 LYLSRAILNDLKRFNLSAICKKLGVNLEG--AHRAVNDAEATAEAFIKMMKLGGSPKSF 561


>gi|253733498|ref|ZP_04867663.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728552|gb|EES97281.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 1438

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611


>gi|110808209|sp|P0C1P9|DPO3_STAAU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1483182|dbj|BAA13160.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1435

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 478 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 588

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 589 ---LNHNEINKKLSNEDAYKRARP 609


>gi|298694556|gb|ADI97778.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 1436

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 478 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 588

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 589 ---LNHNEINKKLSNEDAYKRARP 609


>gi|296451302|ref|ZP_06893042.1| DNA polymerase III PolC [Clostridium difficile NAP08]
 gi|296880346|ref|ZP_06904309.1| DNA polymerase III PolC [Clostridium difficile NAP07]
 gi|296259908|gb|EFH06763.1| DNA polymerase III PolC [Clostridium difficile NAP08]
 gi|296428587|gb|EFH14471.1| DNA polymerase III PolC [Clostridium difficile NAP07]
          Length = 1432

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 97/170 (57%), Gaps = 9/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
              +VFDIETTG  + ND+I EIGAV++ ++   +R F   + P  +  S +  +L GIT
Sbjct: 416 QTFVVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGIT 473

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E +KDKP+   +  +F +F    ++  +AHNA+FD GFI+ + +      L  ++ +DT
Sbjct: 474 NELIKDKPTIEEVLPKFMEFVG--DSVLVAHNAEFDTGFISQKCREQGL--LYNNKKVDT 529

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L +AR   P+  R+ LN + K  GI + +   H A+ D+   + ++ K +
Sbjct: 530 LMLARVMLPNLKRHRLNVVAKELGIPLLNH--HRAVDDAEATALIFNKFL 577


>gi|242373555|ref|ZP_04819129.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
 gi|242348918|gb|EES40520.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
          Length = 1442

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHDGEIIDK-FERFSNPHER-LSETIINLTHITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 484 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 540

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 541 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVNNH- 597

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 598 ------NEINKKLTNEDAYKRARP 615


>gi|255655317|ref|ZP_05400726.1| DNA polymerase III PolC-type [Clostridium difficile QCD-23m63]
          Length = 1432

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 97/170 (57%), Gaps = 9/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
              +VFDIETTG  + ND+I EIGAV++ ++   +R F   + P  +  S +  +L GIT
Sbjct: 416 QTFVVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGIT 473

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E +KDKP+   +  +F +F    ++  +AHNA+FD GFI+ + +      L  ++ +DT
Sbjct: 474 NELIKDKPTIEEVLPKFMEFVG--DSVLVAHNAEFDTGFISQKCREQGL--LYNNKKVDT 529

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L +AR   P+  R+ LN + K  GI + +   H A+ D+   + ++ K +
Sbjct: 530 LMLARVMLPNLKRHRLNVVAKELGIPLLNH--HRAVDDAEATALIFNKFL 577


>gi|323443912|gb|EGB01523.1| DNA polymerase III PolC [Staphylococcus aureus O46]
          Length = 1436

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 478 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMQELGV---- 588

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 589 ---LNHNEINKKLSNEDAYKRARP 609


>gi|302332870|gb|ADL23063.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 1438

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611


>gi|282916524|ref|ZP_06324282.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770328|ref|ZP_06343220.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           H19]
 gi|282319011|gb|EFB49363.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460475|gb|EFC07565.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           H19]
          Length = 1438

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611


>gi|28210957|ref|NP_781901.1| DNA polymerase III PolC [Clostridium tetani E88]
 gi|32469700|sp|Q895K2|DPO3_CLOTE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28203396|gb|AAO35838.1| DNA polymerase III, alpha chain [Clostridium tetani E88]
          Length = 1427

 Score =  181 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  +KND+IIEIGAV++ +    ++ +  F+ P  R    + ++L GI D 
Sbjct: 413 YVVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDK-YSTFVNPE-RIIPEKIIELTGIHDY 470

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  +F DF   +++  +AHNA FDV FI    +         + I+DT+ 
Sbjct: 471 MVKDAPKIEEVLPKFIDFI--EDSILVAHNANFDVSFIKKNCKDFGIHF--NNPILDTIP 526

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + +  +P   R  LN + K  GI + +   H A+ D+    D+ +K
Sbjct: 527 LCKFLYPELKRYKLNVVAKHLGIPLLNH--HRAVEDAKTTGDILLK 570


>gi|164688523|ref|ZP_02212551.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM
           16795]
 gi|164602936|gb|EDQ96401.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM
           16795]
          Length = 1432

 Score =  181 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 59/170 (34%), Positives = 101/170 (59%), Gaps = 9/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
              +VFD+ETTG  +KND+I EIGAV++ ++   +R F   + P  +  S +  +L GIT
Sbjct: 416 QTFVVFDLETTGFSNKNDKITEIGAVKVKNFEIVDR-FNELINPE-KDISYKVQELTGIT 473

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ +KDKP+   I  +F +F    ++  +AHNA+FD+GFIN + + +N +    ++ +DT
Sbjct: 474 NDLIKDKPTIEEILPKFMEFVG--DSVLVAHNAEFDIGFINQKCKEMNIEF--KNKSVDT 529

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L +AR   P   R  LN+L K  G+ +   + H A+ D+   + ++IK +
Sbjct: 530 LMLARILLPHLKRFKLNNLTKELGVPL--HNHHRAVDDAAATAQIFIKFL 577


>gi|642270|emb|CAA88043.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1415

 Score =  181 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 478 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 588

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 589 ---LNHNEINKKLSNEDAYKRARP 609


>gi|319892281|ref|YP_004149156.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161977|gb|ADV05520.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 1435

 Score =  181 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 63/211 (29%), Positives = 112/211 (53%), Gaps = 15/211 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+  K +     
Sbjct: 413 IMLQDATYVVFDVETTGLSNQYDKIIELAAVKVKNGEIIDK-FERFSNPH-EKLTETIKN 470

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITD+ LKD P    + +EF  +    +A ++AHNA FD+GFI+   +R+   P   +
Sbjct: 471 LTHITDDMLKDAPEIEEVLTEFKAWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STN 527

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL ++R  + S  ++ LN L K+YG+ ++    H A+ D+   + +++KM+     
Sbjct: 528 AVIDTLELSRTINTSYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFVKMLAQLKA 585

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
           ++           ++  K + N    KR +P
Sbjct: 586 LDVHNH-------QDINKKLSNEDAYKRARP 609


>gi|56419793|ref|YP_147111.1| DNA polymerase III PolC [Geobacillus kaustophilus HTA426]
 gi|56379635|dbj|BAD75543.1| DNA-directed DNA polymerase III alpha chain [Geobacillus
           kaustophilus HTA426]
          Length = 1444

 Score =  181 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 103/185 (55%), Gaps = 8/185 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R ++   +VFD+ETTGL +  + IIE+ AV++ D    +R F  F  P G   S   ++L
Sbjct: 423 RLSEETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANP-GHPLSVTTMEL 480

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GITDE +KD P    + + F D+    +A  +AHNA FD+GF+N  L R+ +  +  + 
Sbjct: 481 TGITDEMVKDAPKPDEVLARFVDWAG--DATLVAHNASFDIGFLNTGLARMGRGKIA-NP 537

Query: 123 IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +IDTL +AR  +P  +N  LN+LCK++ I ++    H A+ D+     + ++++    + 
Sbjct: 538 VIDTLELARFLYPDLKNHRLNTLCKKFDIELTQH--HRAIYDAEATGHLLMRLLKEAEER 595

Query: 182 NFGFK 186
              F 
Sbjct: 596 GILFH 600


>gi|254974851|ref|ZP_05271323.1| DNA polymerase III PolC-type [Clostridium difficile QCD-66c26]
 gi|255313978|ref|ZP_05355561.1| DNA polymerase III PolC-type [Clostridium difficile QCD-76w55]
 gi|255516658|ref|ZP_05384334.1| DNA polymerase III PolC-type [Clostridium difficile QCD-97b34]
 gi|255649757|ref|ZP_05396659.1| DNA polymerase III PolC-type [Clostridium difficile QCD-37x79]
 gi|260682913|ref|YP_003214198.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
 gi|260686511|ref|YP_003217644.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
 gi|260209076|emb|CBA62219.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
 gi|260212527|emb|CBE03476.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
          Length = 1432

 Score =  181 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 58/170 (34%), Positives = 97/170 (57%), Gaps = 9/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
              +VFDIETTG  + ND+I EIGAV++ ++   +R F   + P  +  S +  +L GIT
Sbjct: 416 QTFVVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGIT 473

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E +KDKP+   I  +F +F    ++  +AHNA+FD GFI+ + +      L  ++ +DT
Sbjct: 474 NELIKDKPTIEEILPKFMEFVG--DSVLVAHNAEFDTGFISQKCREQGL--LYNNKKVDT 529

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L +AR   P+  R+ LN + K  GI + +   H A+ D+   + ++ K +
Sbjct: 530 LMLARVMLPNLKRHRLNVVAKELGIPLLNH--HRAVDDAEATALIFNKFL 577


>gi|170761721|ref|YP_001787734.1| DNA polymerase III PolC [Clostridium botulinum A3 str. Loch Maree]
 gi|169408710|gb|ACA57121.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 1432

 Score =  181 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 95/169 (56%), Gaps = 9/169 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +VFD+ETTG  +KND+IIEIGAV++      +R F  F+ P GR    +  +L  I
Sbjct: 415 EDTFVVFDLETTGFSNKNDKIIEIGAVKIEKGKIVDR-FSEFVNP-GRSIPDKITELTSI 472

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+ ++DK +   I   F DF    ++  +AHNA FDV FIN   + +  +    + ++D
Sbjct: 473 TDDMVQDKETIDKILPRFIDFIG--DSVVVAHNAAFDVSFINKNCKDLKIEF--ENSVMD 528

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           T++++R   P   R  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 529 TVTLSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575


>gi|325263721|ref|ZP_08130454.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. D5]
 gi|324030759|gb|EGB92041.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. D5]
          Length = 1498

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 96/176 (54%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTG  +  D+IIEIGAV++++    +R F  F+ P  R    +  +L  ITDE
Sbjct: 461 YIVFDLETTGFSAIKDKIIEIGAVKVVNGEIVDR-FSTFVNPK-RPIPFQITQLTSITDE 518

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P   +I  +F +F   ++   +AHNA FDVGFI    +   +D       +DT++
Sbjct: 519 MVMGYPDIETILPQFLEF--AKDGVLVAHNAGFDVGFIEQNCR--YQDIEPHFVYVDTVA 574

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +AR   P+ S+  LN + K  GI++ +   H A+ D+   S++++K +    + N 
Sbjct: 575 MARVLLPTLSKYKLNVVAKALGISLENH--HRAVDDAAATSEIFVKFVQMLKEQNI 628


>gi|255284409|ref|ZP_05348964.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella
           formatexigens DSM 14469]
 gi|255265034|gb|EET58239.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella
           formatexigens DSM 14469]
          Length = 1530

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG     +RIIEIGAV++ +   T+R F  F+ P          +L  I D  
Sbjct: 511 VVFDLETTGFSPTQNRIIEIGAVKVENGEITDR-FSTFVNPQ-VPIPFRIEQLTSINDNM 568

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+   +  EF DF    +A   AHNA FDV FI   ++R+          +DT+++
Sbjct: 569 VMDAPTIEQVLPEFLDFVG--DAVLAAHNASFDVSFIEENMRRLGL--WRDFTYVDTVAL 624

Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           AR   P   R  L+++ K   + + H   H A+ D+   + +Y+K M 
Sbjct: 625 ARVLLPQLNRFKLDTVAKALHVQLQHH--HRAVDDAECTAGIYLKFME 670


>gi|319649525|ref|ZP_08003681.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
 gi|317398687|gb|EFV79369.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
          Length = 1441

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 99/185 (53%), Gaps = 8/185 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +  +   +VFD+ETTGL +  D IIE+ AV++ D    +R F+ F  P+    S   + L
Sbjct: 420 KLTEDTYVVFDVETTGLSAVYDTIIELAAVKIHDGEIIDR-FESFANPH-HPLSATTINL 477

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GITD+ +++ P    +  +F ++    +A  +AHNA FD+GF+N   +++       + 
Sbjct: 478 TGITDDLVENAPEVEEVLKKFHEWAG--DAVLVAHNASFDMGFLNVGYKKMGIGKAS-NP 534

Query: 123 IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +IDTL +AR  +P  +N  LN+L K++ + ++    H A+ D+     + +KM+    + 
Sbjct: 535 VIDTLELARFLYPDMKNHRLNTLAKKFDVELTQH--HRAIYDAEATGYLLLKMLKHADEK 592

Query: 182 NFGFK 186
              + 
Sbjct: 593 GIEYH 597


>gi|314933443|ref|ZP_07840808.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus caprae C87]
 gi|313653593|gb|EFS17350.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus caprae C87]
          Length = 1442

 Score =  181 bits (460), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 102/176 (57%), Gaps = 8/176 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 484 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 540

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++  
Sbjct: 541 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMIQQMKELGV 594


>gi|187778984|ref|ZP_02995457.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC
           15579]
 gi|187772609|gb|EDU36411.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC
           15579]
          Length = 1442

 Score =  181 bits (460), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 93/169 (55%), Gaps = 9/169 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +VFD+ETTG  SKND+IIEIGAV++      +R F  F+ P  R    +  +L  I
Sbjct: 425 EDTFVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPEKITELTSI 482

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+ + DK +   I   F +F    ++  +AHNA FDV FIN   + +  +    + ++D
Sbjct: 483 TDDMVDDKEAIDKILPRFIEFIG--DSVVVAHNAAFDVSFINKNCKDLKIEF--KNSVMD 538

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           T++++R   P   R  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 539 TVTLSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 585


>gi|82750865|ref|YP_416606.1| DNA polymerase III PolC [Staphylococcus aureus RF122]
 gi|123549060|sp|Q2YXK4|DPO3_STAAB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|82656396|emb|CAI80815.1| DNA polymerase III [Staphylococcus aureus RF122]
          Length = 1438

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ ++IIE+ AV++ +    ++ F+ F  P+ R  S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYNKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                  E  K + N    KR +P
Sbjct: 591 ---LNHNEINKKLSNQDAYKRARP 611


>gi|323464622|gb|ADX76775.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus pseudintermedius ED99]
          Length = 1435

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 63/211 (29%), Positives = 112/211 (53%), Gaps = 15/211 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+  K +     
Sbjct: 413 IMLQDATYVVFDVETTGLSNQYDKIIELAAVKVKNGEIIDK-FERFSNPH-EKLTETIKN 470

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITD+ LKD P    + +EF  +    +A ++AHNA FD+GFI+   +R+   P   +
Sbjct: 471 LTHITDDMLKDAPEIEEVLTEFKAWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-SAN 527

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL ++R  + S  ++ LN L K+YG+ ++    H A+ D+   + +++KM+     
Sbjct: 528 AVIDTLELSRTINTSYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFVKMLAQLKA 585

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
           ++           ++  K + N    KR +P
Sbjct: 586 LDVHNH-------QDINKKLSNEDAYKRARP 609


>gi|317500099|ref|ZP_07958334.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898584|gb|EFV20620.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 1520

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 9/197 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTG  S  D IIE+GAV++ D   T+R F  F+ P  R    E   L  ITDE
Sbjct: 483 YIVFDIETTGFSSIKDAIIEVGAVKVTDGKITDR-FSTFVNPK-RPIPFEITNLTSITDE 540

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +  +F +F    +   +AHNA FDVGFI    + +     D    +DT++
Sbjct: 541 MVMDSPTIDVVLPQFLEFAG--DGVLVAHNAGFDVGFIEQNCRSLGLS--DEFVYLDTVA 596

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR   P+ S+  LN + K   I++ +   H A+ D+   +++++K      +   G   
Sbjct: 597 LARVLLPTLSKYKLNIVAKALNISLENH--HRAVDDAEATAEIFVKFTEMLKKDQVGTLK 654

Query: 188 NEDRFFKEEKKTVPNIS 204
             +R+       +  + 
Sbjct: 655 EVNRYGDRNVNAIRKMP 671


>gi|329769168|ref|ZP_08260588.1| DNA polymerase III [Gemella sanguinis M325]
 gi|328839387|gb|EGF88965.1| DNA polymerase III [Gemella sanguinis M325]
          Length = 1449

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 107/186 (57%), Gaps = 7/186 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R      +VFD+ETTGL ++ DR+IEI AV++ + S+ + +F+ ++ P  R  S    +
Sbjct: 422 LRLKDATYVVFDVETTGLSAERDRLIEIAAVKVKNGSEID-SFESYINP-RRPISELITR 479

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITD+ +KD P    + + F+++ +E +   +AHNAKFD+GF++   +R+       +
Sbjct: 480 LTSITDDDVKDAPFEEEVMTNFYNWLDEDD-ILVAHNAKFDLGFLDKSFERLGLKN-KNN 537

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             IDTL I+R ++    R+ L++L K Y + +     H A+ D+   +++++KM+    +
Sbjct: 538 ASIDTLFISRAENKEAKRHGLSNLAKLYKVRLVQH--HRAIYDTKATAEIFVKMLDQLYK 595

Query: 181 INFGFK 186
           +   + 
Sbjct: 596 LGIEYH 601


>gi|148284671|ref|YP_001248761.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
           Boryong]
 gi|146740110|emb|CAM80283.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
           Boryong]
          Length = 222

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 88/230 (38%), Positives = 128/230 (55%), Gaps = 12/230 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            RKIV D ET+GLD K   RIIEIGAVEL  D ++   TF  ++ P  R  S EA K+HG
Sbjct: 2   QRKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPE-RDISKEAYKVHG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ++ +FL DKP F  I  EF  F +   A+ I HNA FD+ F+N+EL RI K  +  + +I
Sbjct: 61  LSRDFLSDKPKFREIVDEFLQFIDR--AQLIMHNANFDMQFLNSELFRIRKSAIPNTCVI 118

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           DTL++AR++ P  R +L++LC ++ I  S R  HGAL D+ LL+ VY +MM G   +   
Sbjct: 119 DTLTLARKRFPKERVNLDALCYKFRIDTSDRHLHGALKDAKLLALVYGRMMHGMQVVLLD 178

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
              +          T  N +       +    T +E+ +H + +  + K+
Sbjct: 179 DTKHNKEIIISNCATNINNT-------VVVEPTCDEIIQHQQLLSKIHKH 221


>gi|168184630|ref|ZP_02619294.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Bf]
 gi|182672306|gb|EDT84267.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Bf]
          Length = 1432

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 94/169 (55%), Gaps = 9/169 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +VFD+ETTG  SKND+IIEIGAV++      +R F  F+ P  R    +  +L  I
Sbjct: 415 EDTFVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPK-RIIPDKITELTSI 472

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+ ++DK +   I   F DF    ++  +AHNA FDV FIN   + +  +    + ++D
Sbjct: 473 TDDMVQDKETIDKILPRFIDFIG--DSVVVAHNADFDVSFINKNCKDLKIEF--ENSVMD 528

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           T++++R   P   R  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 529 TVTLSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575


>gi|237795859|ref|YP_002863411.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Ba4 str. 657]
 gi|229260819|gb|ACQ51852.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Ba4 str. 657]
          Length = 1432

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 94/169 (55%), Gaps = 9/169 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +VFD+ETTG  SKND+IIEIGAV++      +R F  F+ P  R    +  +L  I
Sbjct: 415 EDTFVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPK-RIIPDKITELTSI 472

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+ ++DK +   I   F DF    ++  +AHNA FDV FIN   + +  +    + ++D
Sbjct: 473 TDDMVQDKETIDKILPRFIDFIG--DSVVVAHNADFDVSFINKNCKDLKIEF--ENSVMD 528

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           T++++R   P   R  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 529 TVTLSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575


>gi|260890306|ref|ZP_05901569.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
 gi|260859926|gb|EEX74426.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
          Length = 1151

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 88/168 (52%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG D  ND+IIEIGAV++         F  F+ P      P+  +L  ITDE
Sbjct: 117 YVVFDIETTGFDPFNDKIIEIGAVKMRGREIIGE-FSEFVNPEI-PIPPKITELTTITDE 174

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +     ++   F +F    +   +AHNAKFDVGFI  +      +      +IDTL 
Sbjct: 175 MVANAEKIETVLPRFLEFC--TDTTVVAHNAKFDVGFIKQKTIEQGLEYSPS--VIDTLP 230

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   P SR   L +L K +GIT+   + H A+ D+   ++V+ K +
Sbjct: 231 LARTLLPDSRGYGLANLVKYFGITLE--THHRAVDDAKATAEVFQKFL 276


>gi|153854163|ref|ZP_01995471.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
 gi|149753212|gb|EDM63143.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
          Length = 1513

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 9/197 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG     D+IIEIGAV+ +++ +    F  F+ P       +  +L  ITD+
Sbjct: 470 YVVFDLETTGFSPIKDKIIEIGAVK-VEHGEITDKFSTFVNPK-VPIPFQITQLTSITDQ 527

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P   ++  +F +F    +A  +AHNA FDV FI    +   +D       +DT++
Sbjct: 528 MVIGAPDIETVLPQFLEFIG--DAALVAHNASFDVSFIEQNCR--YQDIQPDFTSVDTVA 583

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR   P+ S+  LN +     I++ +   H A+ D+   +++++K +            
Sbjct: 584 MARILLPTLSKYKLNVVANALHISLENH--HRAVDDAGATAEIFVKFVEMLKDRGIYDLA 641

Query: 188 NEDRFFKEEKKTVPNIS 204
             ++F +     V  + 
Sbjct: 642 KLNQFGENNADAVRKLP 658


>gi|254456100|ref|ZP_05069529.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083102|gb|EDZ60528.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 220

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 13/224 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+++V D ETTG+  K   RI+EIG +EL +   T   F  +L P  RK S +AL++HG 
Sbjct: 1   MKEVVLDTETTGISVKEGHRIVEIGCIELDNLIPTKNRFHCYLNPE-RKVSEKALEVHGY 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDEFL ++  FS I  +F  F  ++    I HNA+FD+G +N EL    K  ++ + I+D
Sbjct: 60  TDEFLSEQKKFSDIGEQFLAFIKDKR--LIIHNAEFDLGHLNNELSIFGKKKIN-NEIVD 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL +AR K P S   L++LCKRY I  S R++H AL+D  LLS VYI ++    +    F
Sbjct: 117 TLILARDKFPGSPVSLDALCKRYRIDNSIRTQHTALIDCDLLSKVYINLI-DQKEPTLNF 175

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
           +  +          V              + +++E+ +H++ ++
Sbjct: 176 QNLDTETDNSNSSKVSYFK-------KVVKPSEDEIFKHNEYLK 212


>gi|331087674|ref|ZP_08336601.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330410366|gb|EGG89799.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 1520

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 9/197 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTG  S  D IIE+GAV++ D   T+R F  F+ P  R    E   L  ITDE
Sbjct: 483 YIVFDIETTGFSSIKDAIIEVGAVKVTDGKITDR-FSTFVNPK-RPIPFEITNLTSITDE 540

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +  +F +F    +   +AHNA FDVGFI    + +     D    +DT++
Sbjct: 541 MVMDSPTIDVVLPQFLEFAG--DGVLVAHNAGFDVGFIEQNCRSLGLS--DEFVYLDTVA 596

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR   P+ S+  LN + K   I++ +   H A+ D+   +++++K      +   G   
Sbjct: 597 LARVLLPTLSKYKLNIVAKALNISLENH--HRAVDDAEATAEIFVKFTEMLKKDQVGTLK 654

Query: 188 NEDRFFKEEKKTVPNIS 204
             +R+       +  + 
Sbjct: 655 EVNRYGDRNVNAIRKMP 671


>gi|295091739|emb|CBK77846.1| DNA polymerase III, alpha chain, Gram-positive type [Clostridium
           cf. saccharolyticum K10]
          Length = 1037

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 12/202 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG     +RIIEIGAV++ +    +R F  F+ P       E  KL  I+D  
Sbjct: 198 VVFDIETTGFSPLKNRIIEIGAVKVENGKIVDR-FSTFVNPE-VPIPFEIEKLTSISDNM 255

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P    +  +F +F +  +A  +AHNA FD+ FI        K       ++DT+S+
Sbjct: 256 VLGAPKIEEVLPKFLEFCS--DAVMVAHNASFDMSFIRHNAMIQGKSFEPT--VLDTVSM 311

Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           AR   P+  R  L+++ K   I++ +   H A+ D+   +++++K +            N
Sbjct: 312 ARFLLPNLNRFKLDTVAKELRISLENH--HRAVDDAGATAEIFVKFVEMLKSRGI---EN 366

Query: 189 EDRFFKEEKKTVPNISLLKRDK 210
            D   ++ + +V  I  +  + 
Sbjct: 367 LDELNEQSRMSVETIRKMPTNH 388


>gi|254519189|ref|ZP_05131245.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
 gi|226912938|gb|EEH98139.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
          Length = 1442

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 92/173 (53%), Gaps = 9/173 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +      IVFDIETTG  +KND+IIEIGAV+ +   +   TF  F+ P  R    +  
Sbjct: 421 MGQSFDDTFIVFDIETTGFSAKNDKIIEIGAVK-IKGREVIDTFSEFVYPKCR-IPYKIT 478

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GITDE ++D      +  +F +F +      +AHNA FD GFI      +  +    
Sbjct: 479 ELTGITDEIVQDADPIEVVLPKFIEFID--GCAVVAHNAAFDTGFIKKNCNDLGLEF--N 534

Query: 121 SRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           S I+DT+ +AR  +P  +   LN + K  G+++ +   H A+ D+   +++++
Sbjct: 535 STIVDTVPLARFLYPELKRVKLNLVAKHLGVSLENH--HRAVDDAKATAEIFL 585


>gi|166032729|ref|ZP_02235558.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC
           27755]
 gi|166027086|gb|EDR45843.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC
           27755]
          Length = 1521

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/200 (28%), Positives = 97/200 (48%), Gaps = 9/200 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K   +VFD+ETTG  S  D+IIEIGAV++ +   T++ +  F+ P          +L  I
Sbjct: 475 KGTYVVFDLETTGFSSAKDKIIEIGAVKVENGEITDK-YSTFVNPKI-PIPFRITQLTSI 532

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE + + P   +I  +F  F    +A  +AHNA FDV FI    ++   +P      +D
Sbjct: 533 TDEMVMESPEIETILPQFLKFVG--DAVLVAHNASFDVSFIEENCRQQGIEP--DFTSVD 588

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           T+ +AR   P+ S+  LN + K   I+  H   H A+ D+ + +++Y+K +    +    
Sbjct: 589 TVGLARVLLPTLSKFKLNVVAKALNISQEHH--HRAVDDARVTAEIYVKFIQMLEERGIE 646

Query: 185 FKTNEDRFFKEEKKTVPNIS 204
                + F     + +  + 
Sbjct: 647 TLDQMNHFGAHNAEAIRKMP 666


>gi|297530567|ref|YP_003671842.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3]
 gi|297253819|gb|ADI27265.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3]
          Length = 1444

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 103/185 (55%), Gaps = 8/185 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R      +VFD+ETTGL +  + IIE+ AV++ D    +R F +F  P G   S   ++L
Sbjct: 423 RLADETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMLFANP-GHPLSVTTMEL 480

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GITDE +KD P    + + F D+    +A  +AHNA FD+GF+NA L R+ +  +  + 
Sbjct: 481 TGITDEMVKDAPKPDEVLARFVDWAG--DATLVAHNASFDIGFLNAGLARMGRGKIA-NP 537

Query: 123 IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +IDTL +AR  +P  +N  LN+LCK++ I ++    H A+ D+     + ++++    + 
Sbjct: 538 VIDTLELARFLYPDLKNHRLNTLCKKFDIELTQH--HRAIYDAEATGHLLMRLLKEAEER 595

Query: 182 NFGFK 186
              F 
Sbjct: 596 GILFH 600


>gi|239636258|ref|ZP_04677260.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus warneri L37603]
 gi|239597613|gb|EEQ80108.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus warneri L37603]
          Length = 1438

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 102/176 (57%), Gaps = 8/176 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+  K S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPH-EKLSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLTDAPEIEDVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++  
Sbjct: 537 LSRTINTDYGKHGLNFLAKKYGVDLTQH--HRAIYDTEATAYIFIKMVQQMKELGV 590


>gi|291166154|gb|EFE28200.1| DNA polymerase III, alpha subunit, Gram-positive type [Filifactor
           alocis ATCC 35896]
          Length = 1407

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 11/197 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  S ND IIEIGAV++ +    +R F  F+ P  R+      +L  IT+E
Sbjct: 390 FVVFDIETTGFSSINDAIIEIGAVKIKNREIIDR-FSEFVNPK-REIPYHITELTSITNE 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++ +   +   F +F   +++ ++AHN+ FD  FI    +R+  D L     IDT+ 
Sbjct: 448 MVCNEDTIEEVLPRFMEF--SKDSVFVAHNSDFDTSFIKENCKRL--DLLYDRIAIDTVE 503

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R       R+ LN + K+ GI++ +   H A+ D+   + +++K +    +   G  T
Sbjct: 504 LSRALLTDLKRHKLNVVAKKLGISLENH--HRAVDDAEATAQIFLKFLTMIEE--CGVTT 559

Query: 188 NEDRFFKEEKKTVPNIS 204
             +   K  K  +  I 
Sbjct: 560 LAEVNQKITKTNIDTIR 576


>gi|94985918|ref|YP_605282.1| DNA polymerase III, epsilon subunit [Deinococcus geothermalis DSM
           11300]
 gi|94556199|gb|ABF46113.1| DNA polymerase III, epsilon subunit [Deinococcus geothermalis DSM
           11300]
          Length = 180

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 10/183 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCP-----NGRKNSPEAL 60
           M  +VFD+ETTGL  + D I+EIGA+ ++D        F+  + P             A 
Sbjct: 1   MNVVVFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQ 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGI+D  ++D P    +  EF DF     +   AHN  FD  F+ A  +R       P
Sbjct: 61  RVHGISDAMVQDAPELGQVLPEFLDFVGR--SAVAAHNIGFDSSFMRAAARRCGLVWAPP 118

Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +    T+ ++RR  P  R ++L+ L +R G++ +   +H +L D  + ++ ++++M   S
Sbjct: 119 AEY-CTVQLSRRAFPRERTHNLDVLAQRLGLSFAPGGRHRSLGDVQVTAEAFVRLMERLS 177

Query: 180 QIN 182
            + 
Sbjct: 178 VLG 180


>gi|126654115|ref|ZP_01725933.1| DNA polymerase III PolC [Bacillus sp. B14905]
 gi|126589395|gb|EAZ83545.1| DNA polymerase III PolC [Bacillus sp. B14905]
          Length = 1443

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 93/174 (53%), Gaps = 8/174 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++ D    ++ ++ F  P+    S   ++L GITD+
Sbjct: 428 YVVFDVETTGLSTAYDTIIELAAVKIKDGQVIDK-YESFANPH-HPLSATTIELTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P    +  EF  F    +   +AHNA FD+GF+    ++   +      +IDTL 
Sbjct: 486 MVRHAPEVEQVIKEFHAFIG--DGIVVAHNASFDIGFLYTGYKKFGLEG-TTHPVIDTLE 542

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +AR  +P    + LN+LCK++ I ++    H A+ D+     + ++++    ++
Sbjct: 543 LARLLYPTMKNHRLNTLCKKFNIELTQH--HRAIYDTEATGYLLLQLLKDADEL 594


>gi|222099063|ref|YP_002533631.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
 gi|221571453|gb|ACM22265.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
          Length = 1367

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 95/176 (53%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD ETTGLD + D IIEIGAV++ +    +  +   + P+G   S ++ ++ GIT E
Sbjct: 360 FVVFDFETTGLDPQVDEIIEIGAVKIKEGRIIDE-YHTLIKPSGT-ISRKSAEITGITQE 417

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127
            L+ + +   +  EF +F   +++  +AHNA FD  F+   +++ + KD   P   +DTL
Sbjct: 418 MLEGERAIEEVLPEFLEFL--EDSILVAHNANFDYRFLRLWIKKVLGKDWEKP--YVDTL 473

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++A+         L+S+ K+ G  +     H AL D+ + + V+++ +    +I  
Sbjct: 474 ALAKSLLRLKSYSLDSVVKKLG--LGSFRHHRALDDARVTAQVFLRFIEMMKKIGI 527


>gi|222151098|ref|YP_002560252.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
 gi|222120221|dbj|BAH17556.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
          Length = 1434

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL S+ D+IIE+ AV++ D    ++ F+ F  P G + +     L GITD+
Sbjct: 418 YVVFDVETTGLSSQYDKIIELAAVKVKDGEIIDK-FERFSNP-GERLNETIKNLTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P   S+ ++F DF    +A ++AHNA FD+GFI+    R+   P   + +IDTL 
Sbjct: 476 MLIDAPPIESVLNDFKDFVG--DAIYVAHNASFDMGFIDTGFDRLGYGP-TENGVIDTLE 532

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + +++KM+          +T
Sbjct: 533 LSRTINTEMGKHGLNFLAKKYGVELTQH--HRAIYDAETTAHIFVKMLKQ-------MET 583

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                 KE    + N    KR +P
Sbjct: 584 LGVTNHKEIDLKLSNKDAYKRARP 607


>gi|148380379|ref|YP_001254920.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932951|ref|YP_001384598.1| DNA polymerase III PolC [Clostridium botulinum A str. ATCC 19397]
 gi|153935522|ref|YP_001388114.1| DNA polymerase III PolC [Clostridium botulinum A str. Hall]
 gi|148289863|emb|CAL83971.1| DNA polymerase III PolC-type [Clostridium botulinum A str. ATCC
           3502]
 gi|152928995|gb|ABS34495.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931436|gb|ABS36935.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A str. Hall]
          Length = 1432

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 9/169 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +VFD+ETTG  SKND+IIEIGAV++      +R F  F+ P  R    +  +L  I
Sbjct: 415 EDTFVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSI 472

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+ + DK +   I   F DF    ++  +AHNA FDV FIN   + +  +    + ++D
Sbjct: 473 TDDMVDDKEAIDKILPRFIDFIG--DSVVVAHNASFDVSFINKNCKDLKIEF--ENSVMD 528

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           T++++R   P   R  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 529 TVTLSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575


>gi|149183493|ref|ZP_01861922.1| DNA polymerase III PolC [Bacillus sp. SG-1]
 gi|148848805|gb|EDL63026.1| DNA polymerase III PolC [Bacillus sp. SG-1]
          Length = 1375

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 95/179 (53%), Gaps = 8/179 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
              +   +VFD+ETTGL +  + IIE+ AV++ D    +R F+ F  P+    S   + L
Sbjct: 419 NLEEDTYVVFDVETTGLSAMYNTIIELAAVKIRDGEIIDR-FESFANPH-HPLSATTINL 476

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GITD+ ++  P  +     F D+    +A  +AHNA FD+GF+N    +   D  + + 
Sbjct: 477 TGITDDMVEGAPEVAEALKAFKDWAG--DAVLVAHNASFDMGFLNVGYGKAGLDKAE-NP 533

Query: 123 IIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +IDTL +AR  +P    + LN+L K++ + ++    H A+ D+     + +KM+   ++
Sbjct: 534 VIDTLELARLLYPEMKNHRLNTLAKKFDVELTQH--HRAIYDAEATGYLLLKMLKDANE 590


>gi|322806689|emb|CBZ04258.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065]
          Length = 1432

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 9/169 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +VFD+ETTG  SKND+IIEIGAV++      +R F  F+ P  R    +  +L  I
Sbjct: 415 EDTFVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSI 472

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+ + DK +   I   F +F    N+  +AHNA FDV FIN   + +  +    + ++D
Sbjct: 473 TDDMVDDKEAIDKILPRFIEFIG--NSVVVAHNAAFDVSFINKNCKDLKIEF--KNSVMD 528

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           T++++R   P   R  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 529 TVTLSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575


>gi|329767541|ref|ZP_08259064.1| DNA polymerase III [Gemella haemolysans M341]
 gi|328835875|gb|EGF85597.1| DNA polymerase III [Gemella haemolysans M341]
          Length = 1449

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 108/186 (58%), Gaps = 7/186 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++      +VFD+ETTGL ++ DR+IEI AV++ + ++ + +F+ ++ P  R  S    +
Sbjct: 422 LKLKDATYVVFDVETTGLSAERDRLIEIAAVKVKNGTEID-SFESYINPQ-RPISELITR 479

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  IT++ ++D P    + + F+++ ++ +   +AHNAKFD+GF++   +R+  +    +
Sbjct: 480 LTSITNDDVRDAPLEKEVMTNFYNWLDKDD-ILVAHNAKFDLGFLDTCFERLGLEN-KNN 537

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             IDTL ++R ++    R+ L++L K Y + +     H A+ D+   +++++KM+    +
Sbjct: 538 ASIDTLFVSRAENKEAKRHGLSNLAKLYKVRLVQH--HRAIYDTKATAEIFVKMLDQLYE 595

Query: 181 INFGFK 186
           +   + 
Sbjct: 596 LGIEYH 601


>gi|149201054|ref|ZP_01878029.1| putative exonuclease [Roseovarius sp. TM1035]
 gi|149145387|gb|EDM33413.1| putative exonuclease [Roseovarius sp. TM1035]
          Length = 688

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 105/199 (52%), Gaps = 10/199 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61
            + +  +VFD ETTGL  +  D I++I  + +++       +F + + P GR   P + +
Sbjct: 489 LSDLSFVVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLVNP-GRPIPPASTR 547

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H I+D+ ++D P        F DF   Q A  +AHNA FD+ F+  + + I +   +P 
Sbjct: 548 VHHISDDMVQDAPDIIEAGRRFHDFC--QGAVLVAHNAPFDLAFLRLKEKVIGRRFDNP- 604

Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++ T+ ++      S ++ L++LC+R+GITI   ++H A+ D+   ++V+++M+  G  
Sbjct: 605 -VLCTVLMSAGLFDHSGQHTLDALCERFGITIPPEARHTAMGDTVATAEVFVRML--GLL 661

Query: 181 INFGFKTNEDRFFKEEKKT 199
              G  T      +E + T
Sbjct: 662 QAKGVTTLGGAIAEEGRMT 680


>gi|226949776|ref|YP_002804867.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A2 str. Kyoto]
 gi|226841257|gb|ACO83923.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A2 str. Kyoto]
          Length = 1432

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 9/169 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +VFD+ETTG  SKND+IIEIGAV++      +R F  F+ P  R    +  +L  I
Sbjct: 415 EDTFVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSI 472

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+ + DK +   I   F +F    N+  +AHNA FDV FIN   + +  +    + ++D
Sbjct: 473 TDDMVDDKEAIDKILPRFIEFIG--NSVVVAHNAAFDVSFINKNCKDLKIEF--KNSVMD 528

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           T++++R   P   R  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 529 TVTLSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575


>gi|150390440|ref|YP_001320489.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens
           QYMF]
 gi|149950302|gb|ABR48830.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens
           QYMF]
          Length = 1432

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 96/173 (55%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTGL ++NDRI EIGAV++ D    ++ F   + P   K   + ++L GITD+
Sbjct: 420 YIVFDIETTGLSNRNDRITEIGAVKIKDSQVIDK-FSALVNPE-MKIPSKIVELTGITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + DK +   I   F  F     +  +AHN+ FD+GFI     RI +     +++IDTL 
Sbjct: 478 MVVDKQTIDVILPGFLAFIGS--SPVVAHNSDFDMGFIRENANRIERTI--ENQVIDTLK 533

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           ++R   P   R+ LNS+ K   +++ +   H A+ D+   +++++K +    Q
Sbjct: 534 LSRILLPQLKRHRLNSIAKELNVSLENH--HRAVDDAQATAEIFVKFIELLKQ 584


>gi|302670324|ref|YP_003830284.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316]
 gi|302394797|gb|ADL33702.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316]
          Length = 1529

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 9/203 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +    +VFDIETTG     +RIIEIGAV++ +     R F  F+ P          KL 
Sbjct: 493 LDDTTFVVFDIETTGFSPIKNRIIEIGAVKIRNGEILER-FSEFINPQ-VPIPYRIEKLT 550

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            ITDE + D P+   I  +F +F   ++A  + HN  FD+ FIN   Q +  D       
Sbjct: 551 SITDEMVMDAPTREVIIPKFVEFC--KDAVLVGHNVAFDISFINQNCQDLGIDV--DYTT 606

Query: 124 IDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +DTL +AR   P  +++ L+++ K   + + H   H A+ D+   + ++ K +    +  
Sbjct: 607 VDTLWLARYFFPLQAKHTLDAVAKTLNVVLDHH--HRAVDDAECTALIFNKFIPMLKEQK 664

Query: 183 FGFKTNEDRFFKEEKKTVPNISL 205
               T+ +   K   + + ++  
Sbjct: 665 AENLTDVNILGKPTPEMIRHLRP 687


>gi|170754900|ref|YP_001781966.1| DNA polymerase III PolC [Clostridium botulinum B1 str. Okra]
 gi|169120112|gb|ACA43948.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum B1 str. Okra]
          Length = 1432

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 92/169 (54%), Gaps = 9/169 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +VFD+ETTG  SKND+IIEIGAV++      +R F  F+ P  R    +  +L  I
Sbjct: 415 EDTFVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSI 472

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+ + DK +   I   F +F    ++  +AHNA FD  FIN   + +  +    + ++D
Sbjct: 473 TDDMVDDKEAIDKILPRFIEFIG--DSVVVAHNAAFDASFINKNCKDLKIEF--KNSVMD 528

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           T++++R   P   R  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 529 TVTLSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575


>gi|330901691|gb|EGH33110.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 209

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 111/205 (54%), Gaps = 13/205 (6%)

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
             R++   A+ +HGIT+EFL  KP F+ +  EF++F   + A+ I HNA FDVGFIN E 
Sbjct: 2   PDRESDEGAIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEF 59

Query: 111 QRIN----KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +      D      ++DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +
Sbjct: 60  ALMGSQDRADITQHCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEI 119

Query: 167 LSDVYIKMMVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDE 223
           L+DVY+ M  G + ++  G  ++ +   +        I  L  D+      R ++ EL E
Sbjct: 120 LADVYLAMTGGQTSLSLAGNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAE 179

Query: 224 HDKTIQTLGKNA----IWDRYISSN 244
           H+  + T+ K      +W + + + 
Sbjct: 180 HEVRMSTIAKACGAPPLWVQMLEAG 204


>gi|153938397|ref|YP_001391721.1| DNA polymerase III PolC [Clostridium botulinum F str. Langeland]
 gi|152934293|gb|ABS39791.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum F str. Langeland]
 gi|295319747|gb|ADG00125.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum F str. 230613]
          Length = 1432

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 9/169 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +VFD+ETTG  SKND+IIEIGAV++      +R F  F+ P  R    +  +L  I
Sbjct: 415 EDTFVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSI 472

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+ + DK +   I   F +F    N+  +AHNA FDV FIN   + +  +    + ++D
Sbjct: 473 TDDMVDDKEAIDKILPRFIEFIG--NSVVVAHNAAFDVSFINKNCKDLKIEF--KNSVMD 528

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           T++++R   P   R  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 529 TVTLSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575


>gi|241888547|ref|ZP_04775855.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
           haemolysans ATCC 10379]
 gi|241864814|gb|EER69188.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
           haemolysans ATCC 10379]
          Length = 1449

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 108/186 (58%), Gaps = 7/186 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++      +VFD+ETTGL ++ DR+IEI AV++ + ++ + +F+ ++ P  R  S    +
Sbjct: 422 LKLKDATYVVFDVETTGLSAERDRLIEIAAVKVKNGAEID-SFESYINPQ-RPISELITR 479

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  IT++ +KD P    + + F+++ ++ +   +AHNAKFD+GF++   +R+  +    +
Sbjct: 480 LTSITNDDVKDAPLEKEVMTNFYNWLDKDD-ILVAHNAKFDLGFLDTCFERLGLEN-KNN 537

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             IDTL ++R ++    R+ L++L K Y + +     H A+ D+   +++++KM+    +
Sbjct: 538 ASIDTLFVSRAENKEAKRHGLSNLAKLYKVRLVQH--HRAIYDTKATAEIFVKMLDQLYE 595

Query: 181 INFGFK 186
           +   + 
Sbjct: 596 LGIEYH 601


>gi|197301360|ref|ZP_03166441.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC
           29176]
 gi|197299517|gb|EDY34036.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC
           29176]
          Length = 1517

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 9/197 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTG  +  D+IIEIGAV++++    +R F  F+ P  R    E   L  ITDE
Sbjct: 481 YIVFDIETTGFSAIRDKIIEIGAVKVVNGEIVDR-FSTFVNPQ-RPIPFEITNLTSITDE 538

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +     ++  +F +F    +   +AHNA FDVGFI    +   ++       +DT++
Sbjct: 539 MVLEADPIENVLPQFLEFVG--DGVLVAHNASFDVGFIEQNCR--YQEIEYRFTYVDTVA 594

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR   P+ S+  LN + K  GI++ +   H A+ D+   +++++K +    + +     
Sbjct: 595 MARVLLPTLSKYKLNLVAKTLGISLENH--HRAVDDAGATAEIFVKFVEMLKKDHITDLK 652

Query: 188 NEDRFFKEEKKTVPNIS 204
             +RF +     +  ++
Sbjct: 653 GINRFGERNVNAIRKMA 669


>gi|169827163|ref|YP_001697321.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
 gi|168991651|gb|ACA39191.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
          Length = 1468

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 93/174 (53%), Gaps = 8/174 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++ D    ++ ++ F  P+    S   ++L GITD+
Sbjct: 453 YVVFDVETTGLSTAYDTIIELAAVKIKDGHVIDK-YESFANPH-HPLSATTIELTGITDD 510

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P    +  EF  F    +   +AHNA FD+GF+    ++   +      +IDTL 
Sbjct: 511 MVRHAPEVEQVIKEFHAFIG--DGIVVAHNASFDIGFLYTGYKKFGLEG-TTHPVIDTLE 567

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +AR  +P    + LN+LCK++ I ++    H A+ D+     + ++++    ++
Sbjct: 568 LARLLYPTMKNHRLNTLCKKFNIELTQH--HRAIYDTEATGYLLLQLLKDADEL 619


>gi|283798089|ref|ZP_06347242.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
 gi|291074233|gb|EFE11597.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
          Length = 1538

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 12/202 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG     ++IIEIGAV++ +    +R F  F+ P       E  KL  I+D  
Sbjct: 514 VVFDIETTGFSPLKNKIIEIGAVKVENGKIVDR-FSTFVNPE-VPIPFEIEKLTSISDNM 571

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P    +  +F +F +  +A  +AHNA FD+ FI        K       ++DT+S+
Sbjct: 572 VLGAPKIEEVLPKFLEFCS--DAVMVAHNASFDMSFIRHNAMIQGKSFEPT--VLDTVSM 627

Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           AR   P+  R  L+++ K   I++ +   H A+ D+   +++++K +            N
Sbjct: 628 ARFLLPNLNRFKLDTVAKELRISLENH--HRAVDDAGATAEIFVKFVEMLKSRGI---EN 682

Query: 189 EDRFFKEEKKTVPNISLLKRDK 210
            D   ++ + +V  I  +  + 
Sbjct: 683 LDELNEQSRMSVETIRKMPTNH 704


>gi|70726651|ref|YP_253565.1| DNA polymerase III PolC [Staphylococcus haemolyticus JCSC1435]
 gi|123660050|sp|Q4L5W6|DPO3_STAHJ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|68447375|dbj|BAE04959.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
           haemolyticus JCSC1435]
          Length = 1438

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 111/204 (54%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  P+  K S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDK-FERFSNPH-EKLSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTESTAYIFIKMVQQMKELGV---- 590

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                 K+  + + N    KR +P
Sbjct: 591 ---TNHKDINQKLSNEDAYKRARP 611


>gi|302874658|ref|YP_003843291.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
 gi|302577515|gb|ADL51527.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
          Length = 1443

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 92/166 (55%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  S+NDRIIEIGAV++ +    +  F VF+ P  +    E  +L GI + 
Sbjct: 430 FVVFDIETTGFSSQNDRIIEIGAVKVKNGEIIDE-FSVFVNPQ-KDIPLEITELTGIDNY 487

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD  +   +  EF+DF +   +  +AHNA FD  FI      ++ D      I+DT+ 
Sbjct: 488 MVKDAKTIDIVIKEFYDFVD--GSILVAHNAAFDTSFIKKNY--LDNDLEFNYPIMDTIP 543

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + +  +P+  +  LN +CK  GIT+ +   H A+ D+   + V++K
Sbjct: 544 LCKYLYPALNKYKLNVICKYLGITLLNH--HRAVDDAKATAMVFLK 587


>gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198642|gb|EGD55825.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 623

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
                 +V D+ETTG  + +DRI EIGAV++         F   + P GR   P+ + L 
Sbjct: 54  LRDTTFVVVDLETTGGSADDDRITEIGAVKIRGGEVLGE-FATLVDP-GRAIPPQIVALT 111

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   L D P    +   F +F   +    +AHNA+FD+GF+     R+ + P   S  
Sbjct: 112 GITTAMLYDAPRIEEVLPAFAEF--ARGTVLVAHNARFDMGFLRKSAARM-RLPWPFSTS 168

Query: 124 IDTLSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           + T+ +ARR           L++L + + +++  R  H AL D+    +V+ +++     
Sbjct: 169 LCTVVMARRILSRQEAPTVKLSALAELFQVSV--RPTHRALDDARATVEVFHRLLERVG- 225

Query: 181 INFGFKTNEDRFFKEEKKTVPNIS--------LLKRDKPLFTRITKEE 220
            N G +T  D       +  P +         L +R      R   +E
Sbjct: 226 -NQGVQTVGD-LTAYLPRATPAMRAKRSIASGLPRRPGVYLFRGPADE 271


>gi|307690728|ref|ZP_07633174.1| DNA polymerase III PolC [Clostridium cellulovorans 743B]
          Length = 1439

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 92/166 (55%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  S+NDRIIEIGAV++ +    +  F VF+ P  +    E  +L GI + 
Sbjct: 426 FVVFDIETTGFSSQNDRIIEIGAVKVKNGEIIDE-FSVFVNPQ-KDIPLEITELTGIDNY 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD  +   +  EF+DF +   +  +AHNA FD  FI      ++ D      I+DT+ 
Sbjct: 484 MVKDAKTIDIVIKEFYDFVD--GSILVAHNAAFDTSFIKKNY--LDNDLEFNYPIMDTIP 539

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + +  +P+  +  LN +CK  GIT+ +   H A+ D+   + V++K
Sbjct: 540 LCKYLYPALNKYKLNVICKYLGITLLNH--HRAVDDAKATAMVFLK 583


>gi|229829203|ref|ZP_04455272.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
           14600]
 gi|229792366|gb|EEP28480.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
           14600]
          Length = 1532

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  ++ DRIIEIGAV +     T+R F  F+ P GR       +L  I D+
Sbjct: 500 FVVFDIETTGFSAEKDRIIEIGAVRMEGGRITDR-FSSFVNP-GRPIPFRITELTSIRDD 557

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +        +  +F  F   Q A  +AHNA FD+GFI     R++ +   P+  +DT++
Sbjct: 558 MVIGSAGIEEVLPDFLAF--SQGAIMVAHNADFDMGFIRQNCLRLHLEA--PATYMDTVA 613

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + R   PS  N  LN+L K   I   H   H A+ D+   + ++ K +
Sbjct: 614 MGRYLMPSLHNQKLNTLAKALKIDPGHH--HRAVDDAEATAHIFEKFI 659


>gi|330685683|gb|EGG97324.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU121]
          Length = 1438

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 102/176 (57%), Gaps = 8/176 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ +    ++ F+ F  P+  K S   + L  ITD+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPH-EKLSETIINLTHITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + ++F ++    +A ++AHNA FD+GFI+   +R+   P   + +IDTL 
Sbjct: 480 MLTDAPEIEDVLTDFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++  
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVDLTQH--HRAIYDTEATAYIFIKMVQQMKELGV 590


>gi|89098599|ref|ZP_01171481.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
 gi|89086561|gb|EAR65680.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
          Length = 1440

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 10/192 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   +   IVFD+ETTGL +  D IIE+ AV++ D    +R F+ F  P+    S   + 
Sbjct: 418 IPLAEGTYIVFDVETTGLSAVYDTIIELAAVKIHDGEIIDR-FESFANPH-HPLSATTID 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +++ P    +   F ++   QN   +AHNA FD+GF+N   +R        +
Sbjct: 476 LTGITDDDVRNAPEVEEVLRRFKEW--SQNDILVAHNASFDMGFLNTGYKRYGLGKAA-N 532

Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGG 178
            +IDTL +AR   P    + LN+L K++ + ++    H A+ D+     + IKM+  V  
Sbjct: 533 PVIDTLELARFLLPEMKNHRLNTLAKKFDVELTQH--HRAIYDAEATGYLLIKMLKEVMQ 590

Query: 179 SQINFGFKTNED 190
             I +  + N++
Sbjct: 591 KGIEYHNQLNDN 602


>gi|196036920|ref|ZP_03104304.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus W]
 gi|228928866|ref|ZP_04091898.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|195990475|gb|EDX54459.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus W]
 gi|228830673|gb|EEM76278.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 1433

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|168180697|ref|ZP_02615361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum NCTC 2916]
 gi|182668382|gb|EDT80361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum NCTC 2916]
          Length = 1432

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 9/169 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +VFD+ETTG  SKND+IIEIGAV++      +R F  F+ P  R    +  +L  I
Sbjct: 415 EDTFVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPK-RTIPDKITELTSI 472

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD  + DK +   I   F DF    ++  +AHNA FDV FIN   + +  +    + ++D
Sbjct: 473 TDNMVDDKETIDKILPRFIDFIG--DSVVVAHNASFDVSFINKNCKDLKIEF--ENSVMD 528

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           T++++R   P   R+ LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 529 TVTLSRFLFPELKRHKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575


>gi|228935132|ref|ZP_04097959.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824497|gb|EEM70302.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 1433

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P    + LN+LCK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|49478392|ref|YP_037879.1| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49329948|gb|AAT60594.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 1433

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|30263821|ref|NP_846198.1| DNA polymerase III PolC [Bacillus anthracis str. Ames]
 gi|47529245|ref|YP_020594.1| DNA polymerase III PolC [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186668|ref|YP_029920.1| DNA polymerase III PolC [Bacillus anthracis str. Sterne]
 gi|52141670|ref|YP_085159.1| DNA polymerase III PolC [Bacillus cereus E33L]
 gi|65321145|ref|ZP_00394104.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bacillus anthracis str. A2012]
 gi|165872624|ref|ZP_02217255.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0488]
 gi|170687849|ref|ZP_02879063.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0465]
 gi|170706900|ref|ZP_02897358.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0389]
 gi|190568456|ref|ZP_03021363.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis Tsiankovskii-I]
 gi|196042171|ref|ZP_03109454.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus NVH0597-99]
 gi|218904946|ref|YP_002452780.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH820]
 gi|227813274|ref|YP_002813283.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. CDC 684]
 gi|228947537|ref|ZP_04109827.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229123331|ref|ZP_04252535.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|229601637|ref|YP_002868056.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0248]
 gi|254683475|ref|ZP_05147335.1| DNA polymerase III PolC [Bacillus anthracis str. CNEVA-9066]
 gi|254721996|ref|ZP_05183785.1| DNA polymerase III PolC [Bacillus anthracis str. A1055]
 gi|254756009|ref|ZP_05208040.1| DNA polymerase III PolC [Bacillus anthracis str. Vollum]
 gi|254759330|ref|ZP_05211355.1| DNA polymerase III PolC [Bacillus anthracis str. Australia 94]
 gi|301055308|ref|YP_003793519.1| DNA polymerase III subunit alpha [Bacillus anthracis CI]
 gi|30258465|gb|AAP27684.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. Ames]
 gi|47504393|gb|AAT33069.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49180595|gb|AAT55971.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. Sterne]
 gi|51975139|gb|AAU16689.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
 gi|164711656|gb|EDR17202.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0488]
 gi|170128318|gb|EDS97187.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0389]
 gi|170668165|gb|EDT18914.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0465]
 gi|190560460|gb|EDV14438.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis Tsiankovskii-I]
 gi|196027023|gb|EDX65647.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus NVH0597-99]
 gi|218536830|gb|ACK89228.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH820]
 gi|227006508|gb|ACP16251.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. CDC 684]
 gi|228660107|gb|EEL15743.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|228812057|gb|EEM58388.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229266045|gb|ACQ47682.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0248]
 gi|300377477|gb|ADK06381.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis
           str. CI]
          Length = 1433

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|167635812|ref|ZP_02394121.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0442]
 gi|254739618|ref|ZP_05197312.1| DNA polymerase III PolC [Bacillus anthracis str. Kruger B]
 gi|167528769|gb|EDR91527.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0442]
          Length = 1433

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINIGFKKAGLEK-TKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|313472267|ref|ZP_07812759.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 1153]
 gi|239529663|gb|EEQ68664.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 1153]
          Length = 1428

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 13/207 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  +N+   ++FD+ETTGL S  D IIEIGAV++ D     R F  F+ P+    S   +
Sbjct: 404 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTI 460

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L  ITDE +      + +   F +F+ ++      HN +FDVGF+NA L+R     +  
Sbjct: 461 NLTSITDEMVSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEI-T 517

Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-- 177
             ++DTL ++R  HP   ++ L+SLCK+Y + + H   H A  D+     +  K++    
Sbjct: 518 QPVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFN 575

Query: 178 --GSQINFGFKTNEDRFFKEEKKTVPN 202
               Q + G   +  +F +  K+  P 
Sbjct: 576 DKFEQDDLGKMNDYAKFGQVYKRAKPT 602


>gi|213582095|ref|ZP_03363921.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 172

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 71/166 (42%), Positives = 101/166 (60%), Gaps = 11/166 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
                D+L++AR+  P  RN L++LC RY I  S R+ HGALLD+ 
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQ 172


>gi|217961238|ref|YP_002339806.1| DNA polymerase III PolC [Bacillus cereus AH187]
 gi|229140459|ref|ZP_04269014.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
 gi|229197928|ref|ZP_04324644.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|217065194|gb|ACJ79444.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH187]
 gi|228585646|gb|EEK43748.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|228643020|gb|EEK99296.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
          Length = 1433

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|167639871|ref|ZP_02398140.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0193]
 gi|177652036|ref|ZP_02934582.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0174]
 gi|254735856|ref|ZP_05193562.1| DNA polymerase III PolC [Bacillus anthracis str. Western North
           America USA6153]
 gi|167512272|gb|EDR87649.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0193]
 gi|172082405|gb|EDT67470.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0174]
          Length = 1433

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|222097262|ref|YP_002531319.1| DNA polymerase iii polc [Bacillus cereus Q1]
 gi|221241320|gb|ACM14030.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
          Length = 1433

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|282932865|ref|ZP_06338262.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
 gi|281302900|gb|EFA95105.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
          Length = 1439

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 13/207 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  +N+   ++FD+ETTGL S  D IIEIGAV++ D     R F  F+ P+    S   +
Sbjct: 415 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTI 471

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L  ITDE +      + +   F +F+ ++      HN +FDVGF+NA L+R     +  
Sbjct: 472 NLTSITDEMVSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEI-T 528

Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-- 177
             ++DTL ++R  HP   ++ L+SLCK+Y + + H   H A  D+     +  K++    
Sbjct: 529 QPVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFN 586

Query: 178 --GSQINFGFKTNEDRFFKEEKKTVPN 202
               Q + G   +  +F +  K+  P 
Sbjct: 587 DKFEQDDLGKMNDYAKFGQVYKRAKPT 613


>gi|260663976|ref|ZP_05864829.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii SJ-7A-US]
 gi|260561862|gb|EEX27831.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii SJ-7A-US]
          Length = 1439

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 13/207 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  +N+   ++FD+ETTGL S  D IIEIGAV++ D     R F  F+ P+    S   +
Sbjct: 415 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTI 471

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L  ITDE +      + +   F +F+ ++      HN +FDVGF+NA L+R     +  
Sbjct: 472 NLTSITDEMVSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEI-T 528

Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-- 177
             ++DTL ++R  HP   ++ L+SLCK+Y + + H   H A  D+     +  K++    
Sbjct: 529 QPVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFN 586

Query: 178 --GSQINFGFKTNEDRFFKEEKKTVPN 202
               Q + G   +  +F +  K+  P 
Sbjct: 587 DKFEQDDLGKMNDYAKFGQVYKRAKPT 613


>gi|229092858|ref|ZP_04223992.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
 gi|228690480|gb|EEL44263.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
          Length = 1433

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLIDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|229086370|ref|ZP_04218547.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
 gi|228696982|gb|EEL49790.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
          Length = 1433

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F  +  +     +AHNA FD+GF+N   ++   D    + +IDTL 
Sbjct: 476 MLTDAPEVGEVFKKFEAWMGDH--TLVAHNASFDMGFLNVGFKKCGLDK-PKNPVIDTLE 532

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P    + LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|323340059|ref|ZP_08080325.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
 gi|323092565|gb|EFZ35171.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
          Length = 1448

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 8/173 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD ETTGL ++ +++IE+ AV++ D  K    F+ F+ P G   S   + L  ITD 
Sbjct: 428 YVVFDTETTGLSAQYNKVIELAAVKMKDGEKIGE-FEEFIDP-GHPLSQTTINLTHITDA 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   +   +F  F +F   +    + HNA FDV F+N    R    P      +DTL 
Sbjct: 486 MVRGSKTEEEVFKLFREFC--KGCIIVGHNATFDVDFMNTGYLRHGM-PEIKEPWVDTLP 542

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +AR  +    R  L++L KR  + + H   H A+ D+     ++ KM+    +
Sbjct: 543 LARILYSDMKRFTLDTLAKRLKVDLEHH--HRAIYDAEATGYIFYKMLADARE 593


>gi|291545334|emb|CBL18442.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp.
           SR1/5]
          Length = 1129

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 9/197 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  +   RIIEIGAV++     T+R F  F+ P          +L  I D 
Sbjct: 102 FVVFDIETTGFSALTCRIIEIGAVKVEKGQITDR-FSTFVNPE-VPIPFRIEQLTSINDS 159

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P    +  +F +F   +    +AHNA FD+ FI    +R      D    +DT+ 
Sbjct: 160 MVLDAPVIEEVLPKFLEFC--EGCVMVAHNADFDMSFIIENCKRQGIS--DDFTYVDTVG 215

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR   P+  R  L+++ K  G+++ H   H A+ D+   ++++++ +    + +     
Sbjct: 216 MARFLLPALNRFKLDTVAKAVGVSLDHH--HRAVDDAACTAEIFVRFVKMLEERDIFDVD 273

Query: 188 NEDRFFKEEKKTVPNIS 204
             +R       T+  + 
Sbjct: 274 EMNRQGAVSPDTIRKLP 290


>gi|238854744|ref|ZP_04645074.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 269-3]
 gi|238832534|gb|EEQ24841.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 269-3]
          Length = 1405

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 13/207 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  +N+   ++FD+ETTGL S  D IIEIGAV++ D     R F  F+ P+    S   +
Sbjct: 381 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTI 437

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L  ITDE +      + +   F +F+ ++      HN +FDVGF+NA L+R     +  
Sbjct: 438 NLTSITDEMVSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEI-T 494

Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-- 177
             ++DTL ++R  HP   ++ L+SLCK+Y + + H   H A  D+     +  K++    
Sbjct: 495 QPVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFN 552

Query: 178 --GSQINFGFKTNEDRFFKEEKKTVPN 202
               Q + G   +  +F +  K+  P 
Sbjct: 553 DKFEQDDLGKMNDYAKFGQVYKRAKPT 579


>gi|229006094|ref|ZP_04163782.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
 gi|228755170|gb|EEM04527.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
          Length = 1433

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F  +  +     +AHNA FD+GF+N   ++   D    + +IDTL 
Sbjct: 476 MLTDAPEVGEVFKKFESWMGDH--TLVAHNASFDMGFLNVGFKKCGLDK-PKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|148269487|ref|YP_001243947.1| DNA polymerase III PolC [Thermotoga petrophila RKU-1]
 gi|281411795|ref|YP_003345874.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
 gi|166217457|sp|A5IJJ8|DPO3_THEP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|147735031|gb|ABQ46371.1| DNA polymerase III catalytic subunit, PolC type [Thermotoga
           petrophila RKU-1]
 gi|281372898|gb|ADA66460.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
          Length = 1367

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 11/177 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGLD + D IIEIGAV++ D    +  +   + P+ R+ S  + ++ GIT E
Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVDE-YHTLIKPS-REISRRSSEITGITQE 415

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127
            L++K S   +  EF  F   +N+  +AHNA FD  F+   +++ +  D   P   IDTL
Sbjct: 416 MLENKRSIEEVLPEFLGFL--ENSIIVAHNANFDYRFLRLWIKKVMGLDWERP--YIDTL 471

Query: 128 SIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++A+         L+S+ ++ G+    H   H AL D+ + + V+++ +    +I  
Sbjct: 472 ALAKSLLKMRSYSLDSVVEKLGLGPFRH---HRALDDARVTAQVFLRFVEMMKKIGI 525


>gi|228992546|ref|ZP_04152473.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
 gi|228767180|gb|EEM15816.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
          Length = 1433

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F  +  +     +AHNA FD+GF+N   ++   D    + +IDTL 
Sbjct: 476 MLTDAPEVGEVFKKFESWMGDH--TLVAHNASFDMGFLNVGFKKCGLDK-PKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|229031448|ref|ZP_04187448.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
 gi|228729737|gb|EEL80717.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
          Length = 1433

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P    + LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|256845844|ref|ZP_05551302.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_36A2]
 gi|256719403|gb|EEU32958.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_36A2]
          Length = 1449

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 8/197 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + +    +VFDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++
Sbjct: 416 KIDDEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEI 473

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             ITDE + ++P    +  +F DF    +A  +AHNA FD+GFI  ++++   +      
Sbjct: 474 TSITDEQVANEPKIDEVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKY-LNIDYQCS 530

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +IDTL +AR   P   +  L  L K  G+ +     H A+ DS   ++++I  +    + 
Sbjct: 531 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588

Query: 182 NFGFKTNEDRFFKEEKK 198
              +  + +  F+   +
Sbjct: 589 GLEYMKDINTGFEVNVR 605


>gi|218898970|ref|YP_002447381.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9842]
 gi|228902321|ref|ZP_04066478.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
 gi|228966763|ref|ZP_04127807.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218545449|gb|ACK97843.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9842]
 gi|228792862|gb|EEM40420.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857290|gb|EEN01793.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
          Length = 1433

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|228922572|ref|ZP_04085872.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837001|gb|EEM82342.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 1433

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|228998594|ref|ZP_04158181.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
 gi|228761062|gb|EEM10021.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
          Length = 1433

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F  +  +     +AHNA FD+GF+N   ++   D    + +IDTL 
Sbjct: 476 MLTDAPEVGEVFKKFESWMGDH--TLVAHNASFDMGFLNVGFKKCGLDK-PKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|228909642|ref|ZP_04073465.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
 gi|228849931|gb|EEM94762.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
          Length = 1435

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 478 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 534

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 591


>gi|206972660|ref|ZP_03233601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH1134]
 gi|218234060|ref|YP_002368619.1| DNA polymerase III PolC [Bacillus cereus B4264]
 gi|228960034|ref|ZP_04121698.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047504|ref|ZP_04193094.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|229071316|ref|ZP_04204539.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|229081073|ref|ZP_04213583.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|229111289|ref|ZP_04240842.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|229129094|ref|ZP_04258067.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|229152017|ref|ZP_04280212.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|229180094|ref|ZP_04307438.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|229191987|ref|ZP_04318957.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|296504313|ref|YP_003666013.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
 gi|206732417|gb|EDZ49598.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH1134]
 gi|218162017|gb|ACK62009.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus B4264]
 gi|228591538|gb|EEK49387.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|228603303|gb|EEK60780.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|228631366|gb|EEK88000.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|228654331|gb|EEL10196.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|228672065|gb|EEL27356.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|228702117|gb|EEL54593.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|228711770|gb|EEL63722.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|228723751|gb|EEL75106.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|228799550|gb|EEM46503.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296325365|gb|ADH08293.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
          Length = 1433

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|228986961|ref|ZP_04147087.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772739|gb|EEM21179.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 1433

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|229162754|ref|ZP_04290711.1| DNA polymerase III polC-type [Bacillus cereus R309803]
 gi|228620636|gb|EEK77505.1| DNA polymerase III polC-type [Bacillus cereus R309803]
          Length = 1433

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|229157394|ref|ZP_04285472.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
 gi|228626121|gb|EEK82870.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
          Length = 1433

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|30021907|ref|NP_833538.1| DNA polymerase III PolC [Bacillus cereus ATCC 14579]
 gi|229146389|ref|ZP_04274760.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
 gi|81433857|sp|Q819Y5|DPO3_BACCR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|29897463|gb|AAP10739.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
 gi|228637022|gb|EEK93481.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
          Length = 1435

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 478 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 534

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 591


>gi|75760862|ref|ZP_00740876.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491646|gb|EAO54848.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 1435

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 478 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 534

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 591


>gi|256851261|ref|ZP_05556650.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 27-2-CHN]
 gi|260660685|ref|ZP_05861600.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 115-3-CHN]
 gi|282934729|ref|ZP_06339972.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
 gi|297206128|ref|ZP_06923523.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16]
 gi|256616323|gb|EEU21511.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 27-2-CHN]
 gi|260548407|gb|EEX24382.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 115-3-CHN]
 gi|281301304|gb|EFA93605.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
 gi|297149254|gb|EFH29552.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16]
          Length = 1439

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 13/206 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  +N+   ++FD+ETTGL S  D IIEIGAV++ D     R F  F+ P+    S   +
Sbjct: 415 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTI 471

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L  ITDE +      + +   F +F+ ++      HN +FDVGF+NA L+R     +  
Sbjct: 472 NLTSITDEMVSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEI-T 528

Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-- 177
             ++DTL ++R  HP   ++ L+SLCK+Y + + H   H A  D+     +  K++    
Sbjct: 529 QPVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFN 586

Query: 178 --GSQINFGFKTNEDRFFKEEKKTVP 201
               Q + G   +  +F +  K+  P
Sbjct: 587 DKFEQDDLGKMNDYAKFGQVYKRAKP 612


>gi|228954094|ref|ZP_04116123.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805660|gb|EEM52250.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 1433

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|228940906|ref|ZP_04103465.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973835|ref|ZP_04134411.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980424|ref|ZP_04140734.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228779244|gb|EEM27501.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228785860|gb|EEM33863.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818742|gb|EEM64808.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326941584|gb|AEA17480.1| DNA polymerase III PolC [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 1433

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|160947401|ref|ZP_02094568.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
 gi|158446535|gb|EDP23530.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
          Length = 1431

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 9/172 (5%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N    +VFDIETTGL    + I EIGAV  ++  K    F   + P  ++ S E  ++ G
Sbjct: 413 NFDTFVVFDIETTGLSHLKNNITEIGAVR-VESGKIVDVFNGLVNPE-QEISQEITEITG 470

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E + DKP  S I  +F +F   +NA ++AHNA+FD+ FI    +R+N +       I
Sbjct: 471 ITNEMVADKPLISEIMPKFLEF--SKNAVFVAHNAEFDISFIKTNCKRLNLEF--NPTFI 526

Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+  AR   P  + + LN+LCK  G+ + +   H A  D+   + + ++++
Sbjct: 527 DTMGFARAILPHLKNHKLNTLCKELGVNLLNH--HRASFDAEACAGILLELI 576


>gi|19703626|ref|NP_603188.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713736|gb|AAL94487.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 1454

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 16/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + +    +VFDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++
Sbjct: 421 KIDDEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEI 478

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             ITDE + ++P    +  +F DF    +A  +AHNA FD+GFI  ++++   +      
Sbjct: 479 TSITDEQVANEPKIDEVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKKY-LNIDYQCS 535

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ- 180
           +IDTL +AR   P   +  L  L K  G+ +     H A+ DS   ++++I  +    + 
Sbjct: 536 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLDKYKEK 593

Query: 181 -------INFGFKTN 188
                  IN GF+ N
Sbjct: 594 GLEYMKDINVGFEVN 608


>gi|296329433|ref|ZP_06871922.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296153442|gb|EFG94272.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 1454

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 16/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + +    +VFDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++
Sbjct: 421 KIDDEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEI 478

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             ITDE + ++P    +  +F DF    +A  +AHNA FD+GFI  ++++   +      
Sbjct: 479 TSITDEQVANEPKIDEVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKKY-LNIDYQCS 535

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ- 180
           +IDTL +AR   P   +  L  L K  G+ +     H A+ DS   ++++I  +    + 
Sbjct: 536 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLDKYKEK 593

Query: 181 -------INFGFKTN 188
                  IN GF+ N
Sbjct: 594 GLEYMKDINVGFEVN 608


>gi|262037779|ref|ZP_06011221.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
           goodfellowii F0264]
 gi|261748251|gb|EEY35648.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
           goodfellowii F0264]
          Length = 1438

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 64/203 (31%), Positives = 100/203 (49%), Gaps = 23/203 (11%)

Query: 1   MIRKNKMR------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           MI K   R       +VFDIETTGLD   D+IIEIGA++L      +  F VF+ P    
Sbjct: 398 MITKPADRLIEDEIYVVFDIETTGLDPYKDKIIEIGAIKLKGKEIIDE-FSVFINPEI-D 455

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              E   L  IT++ +KD     ++  +F +F   ++   +AHNAKFDVGFIN + + + 
Sbjct: 456 IPEEITALTNITNDMVKDAEKVETVLPKFLEFC--KDTTVVAHNAKFDVGFINQKAKNLG 513

Query: 115 KDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +      +IDTL  AR   P   R  L  +   + + + +   H A+ D+   ++++ K
Sbjct: 514 LEYSPS--VIDTLHWARILLPEQKRFGLKYIANYFNVVLDNH--HRAVDDAKATAEIFQK 569

Query: 174 MM--------VGGSQINFGFKTN 188
            +        +  S+IN   +TN
Sbjct: 570 FLNMVLSRGVLKLSEINQELQTN 592


>gi|310641590|ref|YP_003946348.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2]
 gi|309246540|gb|ADO56107.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2]
          Length = 1438

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 96/174 (55%), Gaps = 8/174 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL    ++IIEI AV++ +  + +R +  F+ P+ R       +L  I DE
Sbjct: 421 YVVFDIETTGLSVTQNKIIEIAAVKMHEGKEIDR-YATFVNPHER-IPYNIQQLTNINDE 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  EF  F    +A  +AHNA+FD+GFI A L+++   P   + ++DTL 
Sbjct: 479 MVKDAPDVEPVMKEFVAFAG--DAVLVAHNARFDIGFIQATLRKMGL-PEMTNPVLDTLE 535

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +AR   P    + LN+L  +Y + +   S H A+ D+  L++V   ++    QI
Sbjct: 536 LARLLFPTMKNHRLNTLTSKYKVALE--SHHRAIDDTVALTEVLNGLLNDAEQI 587


>gi|170288161|ref|YP_001738399.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
 gi|170175664|gb|ACB08716.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
          Length = 1367

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 11/177 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGLD + D IIEIGAV++ D    +  +   + P+ R+ S  + ++ GIT E
Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVDE-YHTLIKPS-REISRRSSEITGITQE 415

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127
            L++K S   +  EF  F   +N+  +AHNA FD  F+   +++ +  D   P   IDTL
Sbjct: 416 MLENKRSIEEVLPEFLGFL--ENSIIVAHNANFDYRFLRLWIKKVMGLDWERP--YIDTL 471

Query: 128 SIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++A+         L+S+ ++ G+    H   H AL D+ + + V+++ +    +I  
Sbjct: 472 ALAKSLLKMRSYSLDSVVEKLGLGPFRH---HRALDDARVTAQVFLRFVEMMKKIGI 525


>gi|228916455|ref|ZP_04080021.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843034|gb|EEM88116.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 1433

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F  +  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEKWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|225572667|ref|ZP_03781422.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039967|gb|EEG50213.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1464

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG    + +IIEIGAV + D     R F  F+ P          +L  I D 
Sbjct: 440 FVVFDLETTGFSPMSCQIIEIGAVRVEDGKIVER-FSTFVNPK-VPIPFRIEQLTSINDS 497

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P    +  +F +F +   A  +AHNA FD+ F+     R+          IDT+ 
Sbjct: 498 MVMDAPVIEEVLPKFLEFCS--GAVMVAHNADFDMSFVEFNCDRLGIP--HDFTYIDTVG 553

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   PS  R  L+++ K   I + H   H A+ D+   +D+++K +
Sbjct: 554 MARFLLPSLNRFKLDTVAKALEIPLGHH--HRAVDDAACTADIFVKFV 599


>gi|47569095|ref|ZP_00239784.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
 gi|47554257|gb|EAL12619.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
          Length = 1433

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|327441015|dbj|BAK17380.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046]
          Length = 1443

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 96/176 (54%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTG  +  D IIE+ AV++ +    + TF+ F  P+ RK + + ++L  ITD+
Sbjct: 429 YIVFDVETTGFSNVYDTIIELAAVKIKNGQVID-TFERFSNPH-RKLTAKIIELTHITDD 486

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L + P  S +  EF DF    +   +AHNA FD+GF+    +    +   P   IDT+ 
Sbjct: 487 MLVNAPELSDVIREFHDFIG--DGVVVAHNAAFDLGFLYVAYKNAGIEVRHPG--IDTVE 542

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++R  +P  + ++L +L K+Y I ++    H A+ D+    ++++ ++   + +  
Sbjct: 543 LSRLVNPGQKSHNLKTLTKKYNIELTQH--HRAIYDTEATGELFLHLLKQAADLGI 596


>gi|229174484|ref|ZP_04302016.1| DNA polymerase III polC-type [Bacillus cereus MM3]
 gi|228609044|gb|EEK66334.1| DNA polymerase III polC-type [Bacillus cereus MM3]
          Length = 1433

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|303256972|ref|ZP_07342986.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
           1_1_47]
 gi|302860463|gb|EFL83540.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
           1_1_47]
          Length = 260

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 82/236 (34%), Positives = 127/236 (53%), Gaps = 21/236 (8%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTG+ +K  DRIIEIG VEL ++  T++ F  ++ P  R+   E +++H I
Sbjct: 1   MREICLDTETTGMAAKEGDRIIEIGCVELGEHGLTDKNFHEYIDPE-RQMEAEVIRVHKI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----S 121
           T+EFL  KP F+ I  +F +F   Q A  I HNA+FD+GF+N EL+++ K  ++      
Sbjct: 60  TNEFLVGKPKFADIADKFIEFV--QGARLIIHNAQFDIGFLNEELRKLGKPSMEEICGKD 117

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYIKMMVGGS 179
            IID++ +A+   P   N L++LCKR  I  + R K  HGALLD+ LL  VY+ +     
Sbjct: 118 NIIDSMELAKAAFPQMHNSLDALCKRLEIDTTRRVKEGHGALLDAELLGQVYLVLKQQQG 177

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            +                  +P             R T+E+L E+++ ++ + K A
Sbjct: 178 ILEIDAAPVSADVHDISDVELP-----------VIRATEEDLSENERVLEMVRKAA 222


>gi|229824922|ref|ZP_04450991.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC
           49176]
 gi|229790925|gb|EEP27039.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC
           49176]
          Length = 1463

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 9/166 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG   KN RIIEIGAV+++     ++ F  F+ P  +    E  KL  IT + 
Sbjct: 436 VVFDIETTGFGPKNCRIIEIGAVKVMGGKVIDK-FSAFVNPK-QSIPEEITKLTSITQDM 493

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P    I   F +F   +    +AHNA FD  FI   ++R+  +  +   I DT++I
Sbjct: 494 VINEPEIDVILPAFLEFC--KGCFLVAHNASFDTSFIFENMKRLGLN--EDFTIADTVTI 549

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  +N  L+++ +R GIT+ H   H A+ D+   +++YIK+
Sbjct: 550 SRVLLPGLKNYKLDTVAERLGITLEHH--HRAVDDAGCTAEIYIKL 593


>gi|294500902|ref|YP_003564602.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551]
 gi|294350839|gb|ADE71168.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551]
          Length = 1436

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++ +    +R F+ F  P+    S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKMKEGEIIDR-FERFANPH-HPLSATTIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P  S +  +F ++    ++  +AHNA FD+GF+N  LQ+I  +      +IDTL 
Sbjct: 479 MVQNAPEISEVLRDFHEWMG--DSILVAHNASFDMGFLNMGLQKIGLEKAANG-VIDTLE 535

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + R  +P    + LN+L K++ I +     H A+ D+     +  KM+
Sbjct: 536 LGRFLYPHMKNHRLNTLAKKFDIELVQH--HRAIYDAETTGYLLNKML 581


>gi|196044660|ref|ZP_03111895.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225865799|ref|YP_002751177.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|229186057|ref|ZP_04313227.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
 gi|196024695|gb|EDX63367.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225786021|gb|ACO26238.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|228597476|gb|EEK55126.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
          Length = 970

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|229019012|ref|ZP_04175854.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
 gi|229025258|ref|ZP_04181678.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228736011|gb|EEL86586.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228742340|gb|EEL92498.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
          Length = 1433

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|229168557|ref|ZP_04296280.1| DNA polymerase III polC-type [Bacillus cereus AH621]
 gi|228614963|gb|EEK72065.1| DNA polymerase III polC-type [Bacillus cereus AH621]
          Length = 1433

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGIEK-TKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|118479040|ref|YP_896191.1| DNA polymerase III, subunit alpha [Bacillus thuringiensis str. Al
           Hakam]
 gi|118418265|gb|ABK86684.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
           Hakam]
          Length = 972

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 478 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 534

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 535 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 591


>gi|295706248|ref|YP_003599323.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319]
 gi|294803907|gb|ADF40973.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319]
          Length = 1436

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++ +    +R F+ F  P+    S   ++L GITD+
Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKMKEGEIIDR-FERFANPH-HPLSATTIELTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P  S +  +F ++    ++  +AHNA FD+GF+N  LQ+I  +      +IDTL 
Sbjct: 479 MVQNAPEISEVLRDFHEWMG--DSILVAHNASFDMGFLNMGLQKIGLEKAANG-VIDTLE 535

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + R  +P    + LN+L K++ I +     H A+ D+     +  KM+
Sbjct: 536 LGRFLYPHMKNHRLNTLAKKFDIELVQH--HRAIYDAETTGYLLNKML 581


>gi|225375372|ref|ZP_03752593.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
           16841]
 gi|225212861|gb|EEG95215.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
           16841]
          Length = 1512

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG     ++IIEIGAV+++    T+R F  F+ P          +L  I D+
Sbjct: 489 FVVFDLETTGFSPDKNKIIEIGAVKVVGGVITDR-FSTFVNPE-VPIPFRIEELTSIKDD 546

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P    I  EF  F   + A  +AHNA+FD+ FI    +    +      IIDT++
Sbjct: 547 MVIDAPKIEEILPEFMKFC--EGAIMVAHNAEFDMSFIKKNCKDQGIE--REFTIIDTVA 602

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +AR   P+  R  L+++ K   +++ +   H A+ D+   +++++K +    +   
Sbjct: 603 LARILLPNLNRFKLDTVAKALNVSLENH--HRAVDDAACTAEIFVKFIEMLKERGM 656


>gi|167464458|ref|ZP_02329547.1| DNA polymerase III PolC [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 686

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 64/202 (31%), Positives = 105/202 (51%), Gaps = 9/202 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I+  +   +VFDIETTGL   N++IIEI  V++ D  +  R +  F+ P+  K      +
Sbjct: 414 IKLKEATYVVFDIETTGLSVINNKIIEIAGVKMKDGKEIGR-YTTFIDPH-EKIPYNIQQ 471

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE ++  P  +    +F +F    +A  +AHNA+FD+GFI A L+ I    L P+
Sbjct: 472 LTNITDEMVQGAPDIAEELPKFVEFVG--DAVLVAHNARFDMGFIQANLKNIGMPEL-PN 528

Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DTL +AR   PS +N  LN+L  ++ +++ +   H A+ D+  L  +   ++    +
Sbjct: 529 PSLDTLELARLLFPSLKNHRLNTLADKFKVSLENH--HRAIDDTVALMHILNHLLQEAEE 586

Query: 181 INF-GFKTNEDRFFKEEKKTVP 201
            N        D   K+ + T P
Sbjct: 587 QNLTQLNRLNDHVGKDLRNTRP 608


>gi|134299812|ref|YP_001113308.1| DNA polymerase III subunit alpha [Desulfotomaculum reducens MI-1]
 gi|134052512|gb|ABO50483.1| DNA polymerase III catalytic subunit, PolC type [Desulfotomaculum
           reducens MI-1]
          Length = 1426

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 8/172 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTG   + D IIEIGAV+ L+  +  R F   + P  ++   E  KL GITDE 
Sbjct: 415 VIIDFETTGFSPQTDEIIEIGAVKYLNGEEVGR-FGTLVNPK-KEIPFEVTKLTGITDEM 472

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P      +   +F  E  A  +AHNA FD+ F+   L++  K  +  +  IDTL +
Sbjct: 473 VKDAPDGKEALTALSEFMGE--AVLVAHNASFDLSFLRVGLRKYLKQEV-TNPAIDTLGV 529

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           AR   P+ + + LN+L K + I +++   H A+ D+   + ++   +   ++
Sbjct: 530 ARVLFPNLKNHKLNTLVKEFKIELTNH--HRAVDDASATAKLWQIFLRKLAE 579


>gi|210608497|ref|ZP_03287873.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787]
 gi|210152988|gb|EEA83994.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787]
          Length = 1269

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 95/197 (48%), Gaps = 9/197 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  +  D IIEIGAV++ +   T++ +  F+ P       E  +L  I D 
Sbjct: 456 YVVFDIETTGFSAVEDHIIEIGAVKVENGKITDK-YSTFVNPE-VPIPFEITQLTSIDDS 513

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P    I  +F +F    +A  +AHNA FDVGFI    + +N +       +DT++
Sbjct: 514 MVMDAPKIDVILPQFLEFVG--DASLVAHNAGFDVGFIEQNCKNLNIE--QEFVSVDTVA 569

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR   P+ S+  LN + K   I++ +   H A+ D+   +++++K +    +       
Sbjct: 570 LARVLLPTLSKYKLNIVAKALNISLENH--HRAVDDAGATAEIFVKFVEMLKEREITTLK 627

Query: 188 NEDRFFKEEKKTVPNIS 204
             + F       V  + 
Sbjct: 628 GVNAFGATNPDAVKKMP 644


>gi|229061421|ref|ZP_04198766.1| DNA polymerase III polC-type [Bacillus cereus AH603]
 gi|228717844|gb|EEL69492.1| DNA polymerase III polC-type [Bacillus cereus AH603]
          Length = 1433

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 98/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   +++  +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKVGIEK-TKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|324327715|gb|ADY22975.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 970

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|229134625|ref|ZP_04263435.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
 gi|228648886|gb|EEL04911.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
          Length = 1433

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGIEK-TKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|163941555|ref|YP_001646439.1| DNA polymerase III PolC [Bacillus weihenstephanensis KBAB4]
 gi|163863752|gb|ABY44811.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 1433

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGIEK-TKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|317498937|ref|ZP_07957220.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893770|gb|EFV15969.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1228

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG +S NDRIIEIGAV +++  +   TF  F+ P  R    +  +L  ITD+
Sbjct: 202 YVVFDIETTGFNSVNDRIIEIGAVRVVEG-EIKETFSEFVNPE-RPIPYKITQLTTITDD 259

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD  +   I  +F  F   + +  +AHNA FD GFI    +R+N        ++DTL 
Sbjct: 260 MVKDAGTIEEILPQFLKFC--EGSVLVAHNAGFDTGFIRENAKRLNLPY--DHTVVDTLG 315

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +AR       +  L+++CK   I +   + H A+ D+     ++++ +    +
Sbjct: 316 LARCLMGHLGKFTLDNICKHLNIILE--THHRAVDDATATGKIFVEFISMLKE 366


>gi|229013001|ref|ZP_04170166.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
 gi|228748255|gb|EEL98115.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
          Length = 1435

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 478 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGIEK-TKNPVIDTLE 534

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 591


>gi|308068695|ref|YP_003870300.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
 gi|305857974|gb|ADM69762.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
          Length = 1438

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 8/174 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL    ++IIEI AV++ D  + +R +  F+ P+ R       +L  I DE
Sbjct: 421 YVVFDIETTGLSVTQNKIIEIAAVKMHDGKEVDR-YATFVNPHER-IPYNIQQLTNINDE 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  EF  F    +A  +AHNA+FDVGFI A L+ +   P   + ++DTL 
Sbjct: 479 MVKDAPDVEPVMKEFVAFAG--DAVLVAHNARFDVGFIQATLRNMGL-PEMTNPVLDTLE 535

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +AR   P    + LN+L  +Y + +   S H A+ D+  L++V   ++    QI
Sbjct: 536 LARLLFPTMKNHRLNTLTTKYKVALE--SHHRAIDDTVALTEVLNGLLNDAEQI 587


>gi|253682510|ref|ZP_04863307.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum D str. 1873]
 gi|253562222|gb|EES91674.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum D str. 1873]
          Length = 1443

 Score =  177 bits (450), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 92/165 (55%), Gaps = 9/165 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  S+ D+IIEIGAV++ + +  + +F  F+ P   K      +L  IT++
Sbjct: 430 FVVFDLETTGFSSEYDKIIEIGAVKIKNGNIID-SFSTFVNPEI-KIPYNITELTSITND 487

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+  +  ++  +F +F   +++  +AHNA FD+ FI      ++ D      ++DT+ 
Sbjct: 488 DVKNADTIDNVLPKFMEFC--KDSVLVAHNANFDMSFIRKNCNDLSIDI--NYTVMDTVP 543

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +A+   P   R  LN++ K  G+++ +   H A+ D+   +D+ +
Sbjct: 544 LAKFLFPELKRYKLNTIAKHLGVSLENH--HRAVDDAKATADILL 586


>gi|289424040|ref|ZP_06425828.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptostreptococcus anaerobius 653-L]
 gi|289155559|gb|EFD04236.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptostreptococcus anaerobius 653-L]
          Length = 1440

 Score =  177 bits (450), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 9/172 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
               +VFDIETTGL   +D + EIGAV++ +  +   +F  F+ P     S +  +L  I
Sbjct: 423 DQTFVVFDIETTGLSPHSDNLTEIGAVKVQN-CEIVDSFSTFVNPK-MDISYQIQELTRI 480

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+E +KD PS      EF +F   +++  +AHNA FD GFI  + Q++  +       +D
Sbjct: 481 TNEMVKDAPSLEEALPEFLEF--AKDSVLVAHNADFDTGFIYQKCQQLGLE--YNFEKVD 536

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           TL++AR  + +  R  L+ +CK  G+ ++    H A+ D+   ++V+IK + 
Sbjct: 537 TLTLARIINTNLKRFSLDKVCKEMGVVLAGH--HRAVNDAQATAEVFIKYLE 586


>gi|256028575|ref|ZP_05442409.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289766495|ref|ZP_06525873.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289718050|gb|EFD82062.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
          Length = 1449

 Score =  177 bits (450), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 8/193 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + +    +VFDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++
Sbjct: 416 KIDDEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEI 473

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             ITDE + ++P  + +  +F DF    +A  +AHNA FD+GFI  ++++   +      
Sbjct: 474 TSITDEQVANEPKINEVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKY-LNIDYKCS 530

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +IDTL +AR   P   +  L  L K  G+ +     H A+ DS   ++++I  +    + 
Sbjct: 531 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588

Query: 182 NFGFKTNEDRFFK 194
              +  + +  F+
Sbjct: 589 GLEYMKDINTGFE 601


>gi|42782909|ref|NP_980156.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987]
 gi|42738836|gb|AAS42764.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus ATCC 10987]
          Length = 970

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++   +    + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN+LCK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKEVIEKGFEYH 589


>gi|56963998|ref|YP_175729.1| DNA polymerase III PolC [Bacillus clausii KSM-K16]
 gi|56910241|dbj|BAD64768.1| DNA polymerase III alpha subunit PolC [Bacillus clausii KSM-K16]
          Length = 1430

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 103/196 (52%), Gaps = 10/196 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + IIE+ AV++ +    + T++ F  P     S   ++L GITD+
Sbjct: 416 YVVFDVETTGLSAVYNTIIELAAVKIKNGEIID-TYESFADPK-EPLSATIIELTGITDD 473

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P  + +  +F +F    NA  +AHNA FD+GF+N   +++    +  + +IDTL 
Sbjct: 474 MVQGAPEPAEVLKQFREFAG--NATLVAHNASFDIGFLNVGYKKLGFSEV-TNPVIDTLE 530

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFGF 185
           + R  +P  +N  LN+LCK++ I +   S H A+ D+   + +  KM+      +I +  
Sbjct: 531 LGRFLYPELKNHRLNTLCKKFDIELV--SHHRAIYDTQATAYLLWKMVKDAAEKEIVYHD 588

Query: 186 KTNEDRFFKEEKKTVP 201
           + N         +  P
Sbjct: 589 ELNNHMGQGNFHRQRP 604


>gi|237744035|ref|ZP_04574516.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
 gi|229431264|gb|EEO41476.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
          Length = 1449

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 8/193 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + +    +VFDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++
Sbjct: 416 KIDDEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEI 473

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             ITDE + ++P    +  +F DF    +A  +AHNA FD+GFI  ++++   +      
Sbjct: 474 TSITDEQVANEPKIDKVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKKY-LNIDYQCS 530

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +IDTL +AR   P   +  L  L K  G+ +     H A+ DS   ++++I  +    + 
Sbjct: 531 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588

Query: 182 NFGFKTNEDRFFK 194
              +  + +  F+
Sbjct: 589 GLEYMKDINTGFE 601


>gi|220931624|ref|YP_002508532.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
 gi|219992934|gb|ACL69537.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
          Length = 1397

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 28/233 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL+   + IIEIGAV++      +  F  F+ P G     +  +L GIT+E
Sbjct: 385 FVVFDLETTGLNKFKNEIIEIGAVKVKSGKVIDE-FSSFVKP-GESIPNKITELTGITNE 442

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P    +  +F +F +   +  +AHNA FD GF+   L++  +  +    ++DTL+
Sbjct: 443 MVSRAPDIEGVIGDFLEFID--GSILVAHNADFDYGFLQVALKKTGQGDIS-YPVLDTLT 499

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R   P  S + LN+L +   + + +   H A+ D+   S+++I  +            
Sbjct: 500 LSRALLPDLSNHKLNTLARHLNVRLDNH--HRAVEDARATSEIFINFL------------ 545

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
                  E  +TVP I+       L T+I   EL  +   I    K  + D Y
Sbjct: 546 --SNIKNEGIETVPGINR------LSTKINWRELPTYHTVIFAKNKQGLKDIY 590


>gi|260494375|ref|ZP_05814506.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_33]
 gi|260198521|gb|EEW96037.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_33]
          Length = 1449

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 8/193 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + +    +VFDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++
Sbjct: 416 KIDDEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEI 473

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             ITDE + ++P    +  +F DF    +A  +AHNA FD+GFI  ++++   +      
Sbjct: 474 TSITDEQVANEPKIDKVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKKY-LNIDYQCS 530

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +IDTL +AR   P   +  L  L K  G+ +     H A+ DS   ++++I  +    + 
Sbjct: 531 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588

Query: 182 NFGFKTNEDRFFK 194
              +  + +  F+
Sbjct: 589 GLEYMKDINTGFE 601


>gi|229117304|ref|ZP_04246682.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
 gi|228666204|gb|EEL21668.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
          Length = 1435

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++        + +IDTL 
Sbjct: 478 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGL-AKTNNPVIDTLE 534

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 591


>gi|229104380|ref|ZP_04235049.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
 gi|228679078|gb|EEL33286.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
          Length = 1433

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++        + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGL-AKTNNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|229098287|ref|ZP_04229234.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
 gi|228685185|gb|EEL39116.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
          Length = 1433

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D +IE+ AV++      +R F+ F  P+ +  S   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +F +F ++  +     +AHNA FD+GFIN   ++        + +IDTL 
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGL-AKTNNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +AR   P  +N  LN++CK+  I ++    H A+ D+     + +KM+    +  F + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589


>gi|205373423|ref|ZP_03226227.1| DNA polymerase III PolC [Bacillus coahuilensis m4-4]
          Length = 1436

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/184 (33%), Positives = 100/184 (54%), Gaps = 10/184 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTGL +  D IIE+ AV++ D    +R F+ F  P+    S   + L GITD+
Sbjct: 421 YIVFDVETTGLSANYDTIIELAAVKVFDGEIIDR-FERFANPH-HPLSATTINLTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P  S + ++F  +   ++   +AHNA FD+GF+N   QR        + +IDTL 
Sbjct: 479 MVKDAPEVSEVVTDFKKW--AEDGILVAHNASFDMGFLNISYQRAGLKKAS-NPVIDTLE 535

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFGF 185
           +AR  +PS +N  LN+L K+  + ++    H A+ D+     +  K++      +I +  
Sbjct: 536 LARFLYPSMKNHRLNTLAKKLDVELTQH--HRAIYDAEATGYILAKLLKETYEKEIKYHD 593

Query: 186 KTNE 189
           + N+
Sbjct: 594 QLND 597


>gi|304404288|ref|ZP_07385950.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus
           YK9]
 gi|304347266|gb|EFM13098.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus
           YK9]
          Length = 1439

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 77/235 (32%), Positives = 114/235 (48%), Gaps = 15/235 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL   N +IIE+  V++    + +R F  F+ P+  K      +L  ITDE
Sbjct: 423 YVVFDIETTGLSIINCKIIELAGVKMRGGQEIDR-FSTFINPH-EKIPYHIQQLTNITDE 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P       EF +F    +A  +AHNA+FD+GFI A  + I   P   + ++DTL 
Sbjct: 481 MVVDAPELEPKLREFVEFIG--DAVLVAHNARFDIGFIQANCKAIGL-PEVMNPVLDTLE 537

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GFK 186
           +AR  HPS +N  LN+L  RY I + +   H A+ DS  L  V   ++   ++ N  G  
Sbjct: 538 LARFLHPSMKNHRLNTLSARYKINLENH--HRAIDDSIALGGVLFGLIKDCNERNVTGLH 595

Query: 187 TNEDRFFKEEKKTVP---NISLLKR--DKPLFTRITKEELDEHDKTIQTLGKNAI 236
              D    +   + P    I  L     K LF  I+     EH K +  + K+ +
Sbjct: 596 QLNDYVGLDLSNSRPFHCGIYALNAVGKKNLFKLISLSH-TEHFKRVACIPKSKL 649


>gi|138894778|ref|YP_001125231.1| DNA polymerase III PolC [Geobacillus thermodenitrificans NG80-2]
 gi|134266291|gb|ABO66486.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans
           NG80-2]
          Length = 1442

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 8/185 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +    +VFD+ETTGL +  + IIE+ AV++ D    +R F  F  P+    S   ++L
Sbjct: 421 RLSDETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANPH-HPLSVTTMEL 478

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GITDE +KD P    +   F D+    ++   AHNA FD+GF+NA L ++    +  + 
Sbjct: 479 TGITDEMVKDAPDVEEVLRRFIDWVG--DSTLAAHNASFDIGFLNAGLAKMGLGKVI-NP 535

Query: 123 IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +IDTL +AR  +P  +N  LN+LCK++ I ++    H A+ D+     + ++++    + 
Sbjct: 536 VIDTLELARFLYPDLKNHRLNTLCKKFDIELTQH--HRAIYDAEATGHLLMRLLKEAEER 593

Query: 182 NFGFK 186
              + 
Sbjct: 594 GILYH 598


>gi|196247598|ref|ZP_03146300.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
 gi|196212382|gb|EDY07139.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
          Length = 1434

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 8/185 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +    +VFD+ETTGL +  + IIE+ AV++ D    +R F  F  P+    S   ++L
Sbjct: 413 RLSDETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANPH-HPLSVTTMEL 470

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GITDE +KD P    +   F D+    ++   AHNA FD+GF+NA L ++    +  + 
Sbjct: 471 TGITDEMVKDAPDVEEVLRRFIDWVG--DSTLAAHNASFDIGFLNAGLAKMGLGKVI-NP 527

Query: 123 IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +IDTL +AR  +P  +N  LN+LCK++ I ++    H A+ D+     + ++++    + 
Sbjct: 528 VIDTLELARFLYPDLKNHRLNTLCKKFDIELTQH--HRAIYDAEATGHLLMRLLKEAEER 585

Query: 182 NFGFK 186
              + 
Sbjct: 586 GILYH 590


>gi|238924126|ref|YP_002937642.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
 gi|238875801|gb|ACR75508.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
          Length = 1510

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 98/217 (45%), Gaps = 12/217 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
             + +VFDIETTG   + ++IIEIGAV+++     +R +  F+ P          +L  I
Sbjct: 477 DDKYVVFDIETTGFSPEKNKIIEIGAVKVIGGEIVDR-YSTFINPE-VPIPFRIEELTSI 534

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+ +   P+   I  +F +F   ++   +AHNA FD+ FI      +  +      I+D
Sbjct: 535 RDDMVITSPTVDVILPQFMEFC--KDCIMVAHNADFDMSFIKRNCALLGME--CNPTIVD 590

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           T+++AR   P   R  L+++ K   I++ H   H A+ D+   +++++K +         
Sbjct: 591 TVALARVLLPQLNRFKLDTVAKALNISLDHH--HRAVDDAACTAEIFVKFIEKLKDRGI- 647

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
             ++ D      K +V  I  +     +      +  
Sbjct: 648 --SSLDEVNALAKSSVEMIRKMPTYHAIILATCDQGR 682


>gi|323484216|ref|ZP_08089585.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
           WAL-14163]
 gi|323692098|ref|ZP_08106345.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
 gi|323402458|gb|EGA94787.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
           WAL-14163]
 gi|323503898|gb|EGB19713.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
          Length = 1511

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 91/175 (52%), Gaps = 9/175 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG     +RIIEIGAV + +    ++ F  F+ P+      E  KL GI D  
Sbjct: 487 VVFDIETTGFSPLKNRIIEIGAVRVEEGRIVDK-FSSFVNPD-VPIPFEIEKLTGINDNM 544

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P    +  EF +F   + A  +AHNA FD+ FI    ++   +      ++DT+S+
Sbjct: 545 VLDAPKIDRVLPEFLEFC--RGAVMVAHNAGFDISFIKENARQQGLEF--NPTVLDTVSL 600

Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           AR   P+  R  L+++ K   I +++   H A+ D+   ++++++ +    + + 
Sbjct: 601 ARVLLPNLNRFKLDTVAKELKINLANH--HRAVDDAGATAEIFVRFIKMLKERDI 653


>gi|325126001|gb|ADY85331.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 1445

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 8/175 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++      ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+    S   + 
Sbjct: 419 MKYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTIN 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE ++     + +  +F DF+   N     HN +FDVGF++A L+R    P    
Sbjct: 477 LTSITDEMVQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DTL ++R  HP  SR+ L+SLC++Y + + H   H A  D+     +  K++
Sbjct: 534 PVVDTLEVSRLLHPEQSRHTLDSLCRKYNVPLEHH--HRANQDAEATGYLMFKLL 586


>gi|309389228|gb|ADO77108.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium
           praevalens DSM 2228]
          Length = 1404

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 8/169 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTGL+     IIEIGAV+     K    F+ F+ P G +   +  ++ GI D 
Sbjct: 392 FIVFDLETTGLNPSQHEIIEIGAVKYQGGKKIAE-FESFINP-GVRIPAKITEITGINDR 449

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+ P    + ++F +F        +AHNA FD GFI   L+++  +  D   ++DTL 
Sbjct: 450 MVKNAPGLEKVINDFIEFAGTG--VLVAHNADFDYGFIRTALEKLEIEK-DDYTVLDTLG 506

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++R     S+ + LN+L K +G+ + +   H AL D++  ++V  K++ 
Sbjct: 507 LSRAVVKDSKNHKLNTLAKYFGVDLENH--HRALDDANATAEVLAKLLE 553


>gi|307264910|ref|ZP_07546472.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920168|gb|EFN50380.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 1407

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 105/201 (52%), Gaps = 9/201 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +    VFDIETTGL + ND IIEIGAV++ +    + TF+ F+ P     S    KL GI
Sbjct: 391 EDEFTVFDIETTGLSNINDEIIEIGAVKIKEGKIID-TFETFVNPKI-PISSFITKLTGI 448

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +KD PS   I   F +F    N+  +AHNA FDV FI ++ ++ N +    + ++D
Sbjct: 449 DESIVKDAPSIEEILPNFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLD 504

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           TL ++R  +   +N  L++L +   + + H   H A+ D+   ++++IK +    ++   
Sbjct: 505 TLELSRHLYKDLKNYKLDTLSEHLQVKLEHH--HRAVDDARATAEIFIKTIDRLKELGVK 562

Query: 185 FKTNEDRFFKEEKKTVPNISL 205
              + +   +E +  +  + +
Sbjct: 563 KVKDINAILRESEVDIRKLPV 583


>gi|253579638|ref|ZP_04856907.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849139|gb|EES77100.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1489

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 9/169 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFDIETTG  S   +IIEIGAV + +   T+R F  F+ P          +L  I D
Sbjct: 461 RFVVFDIETTGFSSLTCQIIEIGAVLVENGEITDR-FSTFVNPK-VPIPFRIEQLTSIND 518

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P+   +  +F +F   ++A  +AHNA FD+GFI     R+          +DT+
Sbjct: 519 SMVMDAPTIEEVLPKFLEF--SKDAVMVAHNADFDMGFIMKNCDRLGI--AHDFTYVDTV 574

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +AR   P+  R  L+++ K  G+++ +   H A+ D+   +++++K +
Sbjct: 575 GMARFLLPALNRFKLDTVAKAVGVSLENH--HRAVDDAACTAEIFVKFV 621


>gi|104774216|ref|YP_619196.1| DNA polymerase III, alpha subunit ( type) (PolC) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423297|emb|CAI98138.1| DNA polymerase III, alpha subunit (gram-positive type) (PolC)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 1411

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 8/175 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++      ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+    S   + 
Sbjct: 385 MKYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTIN 442

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE ++     + +  +F DF+   N     HN +FDVGF++A L+R    P    
Sbjct: 443 LTSITDEMVQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQ 499

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DTL ++R  HP  SR+ L+SLC++Y + + H   H A  D+     +  K++
Sbjct: 500 PVVDTLEVSRLLHPEQSRHTLDSLCRKYNVPLEHH--HRANQDAEATGYLMFKLL 552


>gi|169342745|ref|ZP_02863785.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens C str. JGS1495]
 gi|169299251|gb|EDS81321.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens C str. JGS1495]
          Length = 1449

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  SKND+IIEIGAV+L D    + +F  F+ P       +  +L  IT  
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPK-VNIPYKITELTSITQN 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P+   +  +F +F    ++  +AHNA FDVGFI   L  + K   +P  ++DT+ 
Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--DSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +AR  +P   +  LN + K  GI++ +   H A+ D+   +++ 
Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENH--HRAVDDAKATAEIL 590


>gi|15614981|ref|NP_243284.1| DNA polymerase III PolC [Bacillus halodurans C-125]
 gi|13959348|sp|Q9KA72|DPO3_BACHD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|10175038|dbj|BAB06137.1| DNA polymerase III (alpha subunit) [Bacillus halodurans C-125]
          Length = 1433

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 108/197 (54%), Gaps = 10/197 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  ++IIE+ AV++ +    +R F+ F  P+    +   ++L GITD+
Sbjct: 419 FVVFDVETTGLSAVYNKIIELAAVKVKNGEIIDR-FERFADPH-EPLTNTIIELTGITDD 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK +P    + +EF  F    +A  +AHNA FD+GF+N   Q++       + +IDTL 
Sbjct: 477 MLKGQPEVEQVLNEFHAFIG--DAVLVAHNASFDMGFLNTGFQKMGLGEA-KNPVIDTLE 533

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFGF 185
           + R  +P+ +N  LN+LCK++ I +   S H A+ D+     +  +M+   ++  I +  
Sbjct: 534 LGRFLYPTLKNHRLNTLCKKFDIELV--SHHRAIYDAEATGHLLWRMVKDATERDILYHD 591

Query: 186 KTNEDRFFKEEKKTVPN 202
           + N++       +  P+
Sbjct: 592 QLNDNMGEGNFHRQRPS 608


>gi|167766537|ref|ZP_02438590.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1]
 gi|167711660|gb|EDS22239.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1]
          Length = 1473

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 90/173 (52%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG +S NDRIIEIGAV +++  +   TF  F+ P  R    +  +L  ITD+
Sbjct: 447 YVVFDIETTGFNSVNDRIIEIGAVRVVEG-EIKETFSEFVNPE-RPIPYKITQLTTITDD 504

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD  +   I  +F  F     +  +AHNA FD GFI    +R+N        ++DTL 
Sbjct: 505 MVKDAGTIEEILPQFLKFCA--GSVLVAHNAGFDTGFIRENAKRLNLPY--DHTVVDTLG 560

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +AR       +  L+++CK   I +   + H A+ D+     ++++ +    +
Sbjct: 561 LARCLMGHLGKFTLDNICKHLNIILE--THHRAVDDATATGKIFVEFISMLKE 611


>gi|291558576|emb|CBL37376.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
           bacterium SSC/2]
          Length = 1470

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 90/173 (52%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG +S NDRIIEIGAV +++  +   TF  F+ P  R    +  +L  ITD+
Sbjct: 444 YVVFDIETTGFNSVNDRIIEIGAVRVVEG-EIKETFSEFVNPE-RPIPYKITQLTTITDD 501

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD  +   I  +F  F     +  +AHNA FD GFI    +R+N        ++DTL 
Sbjct: 502 MVKDAGTIEEILPQFLKFCA--GSVLVAHNAGFDTGFIRENAKRLNLPY--DHTVVDTLG 557

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +AR       +  L+++CK   I +   + H A+ D+     ++++ +    +
Sbjct: 558 LARCLMGHLGKFTLDNICKHLNIILE--THHRAVDDATATGKIFVEFISMLKE 608


>gi|146276555|ref|YP_001166714.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554796|gb|ABP69409.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 695

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 7/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61
           R   +  +VFD ETTGL    D I++I AV +++  +     F   + P  R   P + +
Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVFDTLVNP-RRPIPPSSTE 548

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGITD  + D P  + +  +F  F   + A  +AHNA FD+ F+      +  D    +
Sbjct: 549 VHGITDAMVADAPDMTEVGRQFHKF--AEGAVLVAHNAPFDMEFLRR--AELLIDRRFDN 604

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            I+DT+ ++      +  + L++L  R GITI   ++H A+ D+   +D ++K++
Sbjct: 605 PILDTVLLSAVLFGQTEVHSLDALAHRLGITIPEEARHTAIGDTVATADAFLKLL 659


>gi|225026305|ref|ZP_03715497.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353]
 gi|224956369|gb|EEG37578.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353]
          Length = 1484

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 9/177 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG    +D IIEIGAV+ +   K +  + VF+ P  R       +L  I D 
Sbjct: 453 YVVFDLETTGFSPIHDAIIEIGAVK-VSKGKISDHYSVFVNPQ-RPIPLRITELTSIDDS 510

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D  S   I  EF  F   +    +AHNA+FDV FI    +R   +      ++DT+ 
Sbjct: 511 MVADAKSIEEILPEFLSFC--EGCSLVAHNAEFDVSFIEENAKRQGFE--TDFTVLDTVQ 566

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           +AR       +  LN++CKR  I   H   H A+ D+ + ++V+++ +    + +  
Sbjct: 567 MARLLLTDLNKFKLNTVCKRLNIKQEHH--HRAVDDARVTAEVFLRFVEMLEEQDVH 621


>gi|300812566|ref|ZP_07092983.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496439|gb|EFK31544.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 1402

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 8/175 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++      ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+    S   + 
Sbjct: 376 MKYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTIN 433

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE ++     + +  EF DF+   N     HN +FDVGF++A L+R    P    
Sbjct: 434 LTSITDEMVQAADDEAVVIKEFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQ 490

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DTL ++R  HP  SR+ L+SLC++Y + + H   H A  D+     +  K++
Sbjct: 491 PVVDTLEVSRLLHPEQSRHTLDSLCRKYNVALEHH--HRANQDAEATGYLMFKLL 543


>gi|225568406|ref|ZP_03777431.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM
           15053]
 gi|225162634|gb|EEG75253.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM
           15053]
          Length = 1487

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 9/199 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  S  D+IIEIGAV+ ++  +    F  F+ P          +L GITD+
Sbjct: 448 FVVFDLETTGFSSIKDKIIEIGAVK-VEGGRITEKFSTFVDPKI-PIPFRITQLTGITDQ 505

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   +    F +F    +A  +AHNA FDVGFI+   + ++  P      +DT++
Sbjct: 506 MVMDAPEIEAALPAFLEFAG--DAALVAHNAGFDVGFIDQNCRYMDITP--DFTAVDTVA 561

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R   P+ S+  LN + K   I++ +   H A+ D+   ++++++ +    +       
Sbjct: 562 MSRILLPTLSKFKLNVVAKALNISLENH--HRAVDDAGATAEIFVRFVDMLKERGIHTLA 619

Query: 188 NEDRFFKEEKKTVPNISLL 206
             ++F       +  +   
Sbjct: 620 RLNQFGSSNANAIRKLPSF 638


>gi|224540943|ref|ZP_03681482.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526094|gb|EEF95199.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM
           15897]
          Length = 1444

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/190 (31%), Positives = 102/190 (53%), Gaps = 8/190 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++ N +  + FD+ETTGL   +D I EIGAV++ +  +  R  Q F+  + +  S +  +
Sbjct: 397 LKLNDLTYVSFDLETTGLSQIDDYITEIGAVKIKNGLEVGR-LQTFIK-SPKPISKKITE 454

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  IT+E +++ P+         +FF +     IAHN +FD+G ++  L+R+ K P+  +
Sbjct: 455 LTSITNEDIRNAPTIEEFMPRLMEFFGDD--LLIAHNGRFDIGMLDKALERMGKSPIS-N 511

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             IDTL ++RR  P  R   L ++C+ Y I     + H A  D+ +LS  +  M+     
Sbjct: 512 PWIDTLPLSRRLIPLQRSYRLGAVCRFYHIPYDTEAAHRADYDAEVLSHSFNVML--QDL 569

Query: 181 INFGFKTNED 190
           I  GFKT ++
Sbjct: 570 IKKGFKTIDE 579


>gi|257125285|ref|YP_003163399.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257049224|gb|ACV38408.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b]
          Length = 1459

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 85/168 (50%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG D  ND+IIEIGAV++         F  F+ P       +  +L  ITDE
Sbjct: 425 YVVFDIETTGFDPFNDKIIEIGAVKMRGREVIGE-FSEFVNPEI-PIPQKITELTTITDE 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +     ++   F +F        +AHNAKFDVGFI  +      +      +IDTL 
Sbjct: 483 MVANAEKIETVLPRFLEFC--TGTTVVAHNAKFDVGFIKQKTIDQGLEYSPS--VIDTLP 538

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   P  R   L +L K +GIT+   + H A+ D+   ++V+ K +
Sbjct: 539 LARTLLPELRGYGLANLVKYFGITLE--THHRAVDDAKATAEVFQKFL 584


>gi|331269632|ref|YP_004396124.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925]
 gi|329126182|gb|AEB76127.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum BKT015925]
          Length = 1443

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 9/165 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  S  D+IIEIGAV++ + +  + +F  F+ P   K      +L  IT++
Sbjct: 430 FVVFDLETTGFSSAYDKIIEIGAVKIKNGNIID-SFSTFVNPEI-KVPYNITELTSITND 487

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+  +  SI  +F +F    ++  +AHNA FD+ FI      +N D      ++DT+ 
Sbjct: 488 DVKNADTIDSILPKFIEFCG--DSVLVAHNANFDMSFIRKNCNDLNIDI--NYTVMDTVP 543

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +A+   P   R  LN++ K  G+++ +   H A+ D+    D+ +
Sbjct: 544 LAKFLFPELKRYKLNTIAKHLGVSLENH--HRAVDDAKATGDILL 586


>gi|168216978|ref|ZP_02642603.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens NCTC 8239]
 gi|182380934|gb|EDT78413.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens NCTC 8239]
          Length = 1449

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  SKND+IIEIGAV+L D    + +F  F+ P       +  +L  IT  
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPK-VNIPYKITELTSITQN 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P+   +  +F +F    ++  +AHNA FDVGFI   L  + K   +P  ++DT+ 
Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--DSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +AR  +P   +  LN + K  GI++ +   H A+ D+   +++ 
Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENH--HRAVDDAKATAEIL 590


>gi|168208108|ref|ZP_02634113.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens E str. JGS1987]
 gi|170660599|gb|EDT13282.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens E str. JGS1987]
          Length = 1449

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  SKND+IIEIGAV+L D    + +F  F+ P       +  +L  IT  
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPK-VNIPYKITELTSITQN 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P+   +  +F +F    ++  +AHNA FDVGFI   L  + K   +P  ++DT+ 
Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--DSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +AR  +P   +  LN + K  GI++ +   H A+ D+   +++ 
Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENH--HRAVDDAKATAEIL 590


>gi|291538542|emb|CBL11653.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis XB6B4]
          Length = 905

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 9/193 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG     ++IIEIGAV+ +++ +    F  F+ P          +L  I D+
Sbjct: 475 YVVFDLETTGFSPDKNKIIEIGAVK-VEHGEITERFSTFVNPE-VPIPYRIEELTSIRDD 532

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   +I  +F +F    +A  +AHNA FD+ FI    +R   +      IIDT++
Sbjct: 533 MVIDAPKIETILPQFMEFCG--DAIMVAHNADFDMSFIIKNCERQGIE--KEFTIIDTVA 588

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR   P   R  L+++ K  G+++ +   H A+ D+   +++++K +            
Sbjct: 589 LARILLPQLNRFKLDTVAKALGVSLENH--HRAVDDAGCTAEIFVKFVKMLHDRGMETLD 646

Query: 188 NEDRFFKEEKKTV 200
             ++  +   +T+
Sbjct: 647 QVNQMGQASPETI 659


>gi|110799061|ref|YP_696378.1| DNA polymerase III PolC [Clostridium perfringens ATCC 13124]
 gi|168211421|ref|ZP_02637046.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens B str. ATCC 3626]
 gi|110673708|gb|ABG82695.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens ATCC 13124]
 gi|170710571|gb|EDT22753.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens B str. ATCC 3626]
          Length = 1449

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  SKND+IIEIGAV+L D    + +F  F+ P       +  +L  IT  
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPK-VNIPYKITELTSITQN 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P+   +  +F +F    ++  +AHNA FDVGFI   L  + K   +P  ++DT+ 
Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--DSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +AR  +P   +  LN + K  GI++ +   H A+ D+   +++ 
Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENH--HRAVDDAKATAEIL 590


>gi|253573562|ref|ZP_04850905.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251847090|gb|EES75095.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 1438

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/199 (30%), Positives = 107/199 (53%), Gaps = 10/199 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL    ++IIEI AV++ +  + +R +  F+ P+ R       +L  I D+
Sbjct: 421 YVVFDIETTGLSVTQNKIIEIAAVKMREGKEIDR-YATFVNPHER-IPYHIQQLTNINDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +   F +F   ++A  +AHNA+FD  F+NA+L+ +   P+  + ++DTL 
Sbjct: 479 MVKDAPDVEPVLKRFVEF--AEDAILVAHNARFDYDFVNAKLKELGL-PIMENPVLDTLE 535

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR   P    + LN+L  +Y +++ +   H A+ D+  L ++   ++    +I  G+KT
Sbjct: 536 LARMLFPTMKNHRLNTLAAKYKVSLENH--HRAIDDTVALGEILNGLLDDAVKIE-GYKT 592

Query: 188 NEDRFFKEEKKTVPNISLL 206
             DR   +  K + N    
Sbjct: 593 L-DRLNDKVGKDLSNARPF 610


>gi|237742507|ref|ZP_04572988.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
 gi|229430155|gb|EEO40367.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
          Length = 1449

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 16/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + +    ++FDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++
Sbjct: 416 KIDDEEFVIFDIETTGLNSHTNEIIEIGAVKIKSGRIVDR-YSQLINP-GRPIPYHITEI 473

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             ITDE + ++P  + +  +F DF    +A  +AHNA FD+GFI  ++++   +      
Sbjct: 474 TSITDEQVANEPKINEVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKY-LNIDYQCS 530

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ- 180
           +IDTL +AR   P   +  L  L K  G+ +     H A+ DS   ++++I  +    + 
Sbjct: 531 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588

Query: 181 -------INFGFKTN 188
                  IN GF+ N
Sbjct: 589 GLEYMKDINIGFEVN 603


>gi|160940984|ref|ZP_02088323.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436074|gb|EDP13841.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1565

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/172 (34%), Positives = 97/172 (56%), Gaps = 12/172 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG   K ++IIEIGAV+++D   T++ F  F+ P+      +  KL GI D 
Sbjct: 542 FVVFDIETTGFSPKKNKIIEIGAVKVVDGRITDK-FSTFVNPD-VPIPFDIEKLTGINDS 599

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P    I  +F +F    +A  +AHNA FDVGFI    +++   P DP  ++DT++
Sbjct: 600 MVLPYPKIDVILPQFLEFVG--DAVLVAHNASFDVGFIGHFAEKLEL-PFDP-TVLDTVA 655

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMV 176
           IAR   P+  R  L+++ K   I++ +   H A+ D+   +++   ++KM+ 
Sbjct: 656 IARLLLPNLNRFKLDTVAKALNISLQNH--HRAVDDAGATAEIFAAFVKMLR 705


>gi|110801936|ref|YP_698978.1| DNA polymerase III PolC [Clostridium perfringens SM101]
 gi|110682437|gb|ABG85807.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens SM101]
          Length = 1449

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  SKND+IIEIGAV+L D    + +F  F+ P       +  +L  IT  
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPK-VNIPYKITELTSITQN 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P+   +  +F +F    N+  +AHNA FDVGFI   L  + K   +P  ++DT+ 
Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--NSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +AR  +P   +  LN + K  GI++ +   H A+ D+   +++ 
Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENH--HRAVDDAKATAEIL 590


>gi|18310673|ref|NP_562607.1| DNA polymerase III PolC [Clostridium perfringens str. 13]
 gi|168214476|ref|ZP_02640101.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens CPE str. F4969]
 gi|24418366|sp|Q8XJR3|DPO3_CLOPE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|18145354|dbj|BAB81397.1| DNA polymerase III alpha subunit [Clostridium perfringens str. 13]
 gi|170714031|gb|EDT26213.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens CPE str. F4969]
          Length = 1449

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  SKND+IIEIGAV+L D    + +F  F+ P       +  +L  IT  
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPK-VNIPYKITELTSITQN 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P+   +  +F +F    N+  +AHNA FDVGFI   L  + K   +P  ++DT+ 
Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--NSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +AR  +P   +  LN + K  GI++ +   H A+ D+   +++ 
Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENH--HRAVDDAKATAEIL 590


>gi|291536049|emb|CBL09161.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis M50/1]
          Length = 911

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 9/193 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG     ++IIEIGAV+++ + +    F  F+ P          +L  I D+
Sbjct: 481 YVVFDLETTGFSPDKNKIIEIGAVKVV-HGEITERFSTFVNPE-VPIPYRIEELTSIRDD 538

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   +I  +F +F    +A  +AHNA FD+ FI    +R   +      IIDT++
Sbjct: 539 MVIDAPKIETILPQFMEFCG--DAIMVAHNADFDMSFIIKNCERQGIE--KEFTIIDTVA 594

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR   P   R  L+++ K  G+++ +   H A+ D+   +++++K +            
Sbjct: 595 LARILLPQLNRFKLDTVAKALGVSLENH--HRAVDDAGCTAEIFVKFVKMLHDRGMETLD 652

Query: 188 NEDRFFKEEKKTV 200
             ++  +   +T+
Sbjct: 653 QVNQMGQASPETI 665


>gi|259046785|ref|ZP_05737186.1| Gram-positive family DNA polymerase III, alpha chain
           [Granulicatella adiacens ATCC 49175]
 gi|259036553|gb|EEW37808.1| Gram-positive family DNA polymerase III, alpha chain
           [Granulicatella adiacens ATCC 49175]
          Length = 1444

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/198 (29%), Positives = 102/198 (51%), Gaps = 11/198 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++ +    ++ F+ F+ P G   S   ++
Sbjct: 420 ILLEDATYVVFDVETTGLSAIYDSIIELAAVKMKNGVVIDK-FEEFIDP-GHPLSATTIQ 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ ++   S   +  EF +F   ++   +AHNA FD+GF+N   + +  +     
Sbjct: 478 LTGITDDMVRGSKSVEQVLKEFHEF--SKDCILVAHNASFDMGFLNTGYENVGIER-TEQ 534

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLS---DVYIKMMVG 177
            +IDTL ++R  HP  + + LN+L KRY + +     H A+ DS        +++K    
Sbjct: 535 PVIDTLELSRMLHPQLKSHRLNTLAKRYNVALEQH--HRAVYDSETTGYLCHIFLKEAAN 592

Query: 178 GSQINFGFKTNEDRFFKE 195
             Q+ +  + N +   +E
Sbjct: 593 DHQLLYHDELNTNIHPEE 610


>gi|239626437|ref|ZP_04669468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516583|gb|EEQ56449.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1554

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 9/172 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +VFDIETTG   K ++IIEIGAV+++D   T+R F  F+ P+      +  KL GI
Sbjct: 528 EDTFVVFDIETTGFSPKKNKIIEIGAVKVVDGKITDR-FSSFVNPD-VPIPFDIEKLTGI 585

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D  +   P    I  +F DF    +A  +AHNA FDVGFI+   +           ++D
Sbjct: 586 NDSMVLPYPKIDVILPQFLDFVG--DAVLVAHNASFDVGFISHFAEEQGLHF--NPTVLD 641

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           T++IAR   P+  R  L+++ K   I++++   H A+ D+   ++++   + 
Sbjct: 642 TVTIARLLLPNLNRFKLDTVAKALNISLANH--HRAVDDAGATAEIFAAFVR 691


>gi|329929349|ref|ZP_08283102.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Paenibacillus sp. HGF5]
 gi|328936718|gb|EGG33161.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Paenibacillus sp. HGF5]
          Length = 1438

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 95/175 (54%), Gaps = 8/175 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  +    +VFDIETTGL    ++IIE+ AV++ +  +  R +  F+ P+ R       +
Sbjct: 414 IELSSATYVVFDIETTGLSITANKIIELAAVKMHEGKEIGR-YATFVNPHER-IPYHIQQ 471

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  I D+ +KD P    +  EF +F    +   +AHNA+FD+GFI A L+    D L+ +
Sbjct: 472 LTNINDDMVKDAPELEPVLKEFVEFVG--DGVLVAHNARFDMGFIQAALKNAGMDTLE-N 528

Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +DTL +AR  HP  +N  LN+L  +Y + +   S H A+ D+  L+ +   ++
Sbjct: 529 PYLDTLELARLVHPGLKNHRLNTLADKYKVLLE--SHHRAIDDTIALAGILNGLL 581


>gi|282882108|ref|ZP_06290749.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus lacrimalis 315-B]
 gi|281298138|gb|EFA90593.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus lacrimalis 315-B]
          Length = 1415

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 98/168 (58%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL    D+I EIGAV+++D   T R F   + P       +  +L  IT+ 
Sbjct: 401 YVVFDIETTGLSPIRDKITEIGAVKIVDGIITER-FSQLINPQ-MLIPEKVQELTRITNA 458

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++++P+   +  +F+DF   +++  +AHNAKFD  FI    +  + D ++P  I+DTLS
Sbjct: 459 LVENEPTIEEVAPKFYDFI--KDSVLVAHNAKFDTAFIRRVFKENDLDFINP--ILDTLS 514

Query: 129 IARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            AR     + + +L +LCK++G+++     H A+ D+   + ++IK++
Sbjct: 515 FARATVKDTKKFNLATLCKKFGVSLVG--AHRAVNDAEATAHLFIKLI 560


>gi|325685948|gb|EGD28011.1| DNA polymerase III PolC [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 1402

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 8/175 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++      ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+    S   + 
Sbjct: 376 MKYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTIN 433

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE ++     + +  +F DF+   N     HN +FDVGF+NA L+R    P    
Sbjct: 434 LTSITDEMVQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVNAALKRCGY-PEISQ 490

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DTL ++R  HP  SR+ L+SLC++Y + + H   H A  D+     +  K++
Sbjct: 491 PVVDTLEVSRLLHPEQSRHTLDSLCRKYNVALEHH--HRANQDAEATGYLMFKLL 543


>gi|302668622|ref|YP_003833070.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
 gi|302397586|gb|ADL36488.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
          Length = 1490

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 9/163 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTGL    D+IIEIGAV++LD    ++ F  F+ P     SP   KL  ITD+ 
Sbjct: 460 VVFDIETTGLSPTEDKIIEIGAVKMLDGVVVDK-FSEFVDPKI-PISPATTKLTTITDDM 517

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P   ++  +F +F    +   + HN  FD+ FI    +R+          IDT+ +
Sbjct: 518 VIGAPLIDAVVPKFVEFCG--DCVLVGHNVGFDISFIIENCRRLGIKKEFTC--IDTMGL 573

Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +R  +P   ++ L ++CK   +       H A+ D+   ++++
Sbjct: 574 SRAFYPQQAKHSLEAVCKTLKVVNEQH--HRAISDAECTAEIF 614


>gi|300813717|ref|ZP_07094037.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512174|gb|EFK39354.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 1415

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 98/168 (58%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL    D+I EIGAV+++D   T R F   + P       +  +L  IT+ 
Sbjct: 401 YVVFDIETTGLSPIRDKITEIGAVKIVDGIITER-FSQLINPQ-MLIPEKVQELTRITNA 458

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++++P+   +  +F+DF   +++  +AHNAKFD  FI    +  + D ++P  I+DTLS
Sbjct: 459 LVENEPTIEEVAPKFYDFI--KDSVLVAHNAKFDTAFIRRVFKENDLDFINP--ILDTLS 514

Query: 129 IARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            AR     + + +L +LCK++G+++     H A+ D+   + ++IK++
Sbjct: 515 FARATVKDTKKFNLATLCKKFGVSLVG--AHRAVNDAEATAHLFIKLI 560


>gi|261407941|ref|YP_003244182.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10]
 gi|261284404|gb|ACX66375.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10]
          Length = 1438

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 95/175 (54%), Gaps = 8/175 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  +    +VFDIETTGL    ++IIE+ AV++ +  +  R +  F+ P+ R       +
Sbjct: 414 IELSSATYVVFDIETTGLSITANKIIELAAVKMHEGKEIGR-YATFVNPHER-IPYHIQQ 471

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  I D+ +KD P    +  EF +F    +   +AHNA+FD+GFI A L+    D L+ +
Sbjct: 472 LTNINDDMVKDAPELEPVLKEFVEFVG--DGVLVAHNARFDMGFIQAALKNAGMDTLE-N 528

Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +DTL +AR  HP  +N  LN+L  +Y + +   S H A+ D+  L+ +   ++
Sbjct: 529 PYLDTLELARLVHPGLKNHRLNTLADKYKVLLE--SHHRAIDDTIALAGILNGLL 581


>gi|307069564|ref|YP_003878041.1| putative DNA polymerase III subunit epsilon [Candidatus Zinderia
           insecticola CARI]
 gi|306482824|gb|ADM89695.1| putative DNA polymerase III, epsilon subunit [Candidatus Zinderia
           insecticola CARI]
          Length = 222

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 85/228 (37%), Positives = 130/228 (57%), Gaps = 13/228 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           ++I+ DIETTGL+ K  DRIIEI  +++L+   TN+ F  ++ PN RK++ +ALK+HGI+
Sbjct: 3   KEIILDIETTGLNVKKGDRIIEIACIKILNRKITNKKFHEYINPN-RKSNKDALKIHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--I 124
           D+FLK+KP F  I  +  +F   +N   I HN+ FD+ F+N E + +            +
Sbjct: 62  DKFLKNKPFFKDIIDKLINFI--KNYTIIIHNSSFDISFLNKEFKILKYKKFKYYVKNIV 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           D+L IAR+K P+ +NDLNSLCKR+ I+I  R  H ALLD  LLS +Y+ ++     I + 
Sbjct: 120 DSLKIARKKFPNKKNDLNSLCKRFKISIKKRKLHNALLDCILLSKIYLILIRKQKNIFY- 178

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
                     +EKK          +K +  +I K+E   H   I+ + 
Sbjct: 179 ------NIINKEKKINNKNKKKLVNKMINIKINKDENKIHKDIIKNIN 220


>gi|307243534|ref|ZP_07525682.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptostreptococcus stomatis DSM 17678]
 gi|306493090|gb|EFM65095.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptostreptococcus stomatis DSM 17678]
          Length = 1202

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 9/171 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            R +VFDIETTG     D I EIGAV L D    +R F  F+ P       E  +L  IT
Sbjct: 185 QRFVVFDIETTGFSVTGDNITEIGAVLLEDGQIKDR-FSTFVNPK-MDIPYEVQELTNIT 242

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++D P      ++F DF   +++  +AHNA FD GFI  +   +  D       +DT
Sbjct: 243 NDMVEDAPGIEEALNKFMDF--AKDSILVAHNAYFDTGFIAQKCSEVGLDYKH--EKLDT 298

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           L +AR   P   R  L+ L K   I +S    H A+ D+   + ++++ + 
Sbjct: 299 LLLARVLMPHMKRFGLDRLTKALSINLSGH--HRAVNDAEATAQLFLRFIA 347


>gi|299823038|ref|ZP_07054924.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
 gi|299816567|gb|EFI83805.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
          Length = 1470

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/182 (31%), Positives = 99/182 (54%), Gaps = 8/182 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   +   +VFD+ETTGL +  D IIE+ AV++ +    + TF+ F+ P GR  S   + 
Sbjct: 447 IDLKEATYVVFDVETTGLSAVYDTIIELAAVKMENGQVVD-TFESFIDP-GRPLSATIIN 504

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ LK      ++   F ++    +A  +AHNA FD+GF+N    +   D  + +
Sbjct: 505 LTGITDDMLKGSDDIETVLKRFKEWCG--DAVLVAHNASFDMGFLNTAYSKAGIDKAE-N 561

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL +AR  +P    + LN+L K++ I +     H A+ D+   + +  K++   ++
Sbjct: 562 AVIDTLELARFLYPHFKNHRLNTLTKKFNIVLEQH--HRAVFDAEATAYLAWKLIKDANE 619

Query: 181 IN 182
           ++
Sbjct: 620 MH 621


>gi|134098272|ref|YP_001103933.1| hypothetical protein SACE_1689 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910895|emb|CAM01008.1| DNA polymerase III, epsilon subunit [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 572

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 98/212 (46%), Gaps = 17/212 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N++  +V D+ETTG  +  D + EIGAV++         FQ  + P  R   P  + 
Sbjct: 18  VPLNEVTFVVVDLETTGGSNAQDAVTEIGAVKVRGGEVVGE-FQTLVDPE-RDIPPSVVT 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           + GIT+  ++D P   S+   F +F   + +  +AHNA FD GF+ A  +R+      P 
Sbjct: 76  ITGITEAMVRDAPRLDSVLPAFLEFC--RGSVLVAHNAPFDTGFLRAGCERLGLRWPKP- 132

Query: 122 RIIDTLSIARRKH---PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +++ T+ +ARR      +    L +L    G        H AL D+    DV   ++   
Sbjct: 133 KVVCTVRLARRVLTRDETPNYRLGTLAGVLGARTE--PVHRALDDARATVDVLHALLERL 190

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
             I  G +T ED         +P+++ L+R K
Sbjct: 191 GPI--GVRTLEDLL-----GHLPDVTPLQRRK 215


>gi|313124033|ref|YP_004034292.1| DNA polymerase iii, alpha subunit (gram-positive type) (polc)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280596|gb|ADQ61315.1| DNA polymerase III, alpha subunit (Gram-positive type) (PolC)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 1445

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 8/175 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++      ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+    S   + 
Sbjct: 419 MKYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTIN 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE ++     + +  +F DF+   N     HN +FDVGF+NA L+R    P    
Sbjct: 477 LTSITDEMVQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVNAALKRCGY-PEISQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DTL ++R  HP  SR+ L+SLC++Y + + H   H A  D+     +  K++
Sbjct: 534 PVVDTLEVSRLLHPEQSRHTLDSLCRKYNVALEHH--HRANQDAEATGYLMFKLL 586


>gi|294784973|ref|ZP_06750261.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_27]
 gi|294486687|gb|EFG34049.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_27]
          Length = 1449

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 8/197 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + +    +VFDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++
Sbjct: 416 KIDDEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEI 473

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             IT+E + ++P    +  +F DF    +A  +AHNA FD+GFI  ++++   +      
Sbjct: 474 TSITNEQVANEPKIDKVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKY-LNIDYQCS 530

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +IDTL +AR   P   +  L  L K  G+ +     H A+ DS   ++++I  +    + 
Sbjct: 531 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588

Query: 182 NFGFKTNEDRFFKEEKK 198
              +  + +  F+   +
Sbjct: 589 GLEYMKDINTGFEVNVR 605


>gi|294783112|ref|ZP_06748436.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 1_1_41FAA]
 gi|294479990|gb|EFG27767.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 1_1_41FAA]
          Length = 1449

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 16/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + ++   +VFDIETTGL+S  ++IIEIGAV++      +R +   + P G        ++
Sbjct: 416 KIDEEEFVVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDR-YSQLINP-GISIPYHITEI 473

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             IT+E + ++P    +  +F +F    +A  +AHNA FD+GFI  +++      L+   
Sbjct: 474 TSITNEQVANQPKIDEVIGKFVEFIG--DAVLVAHNAPFDMGFIKRDIKEYLNIDLE-CS 530

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ- 180
           +IDTL +AR   P   +  L  L K  G+ +     H A+ DS   ++++I  +    + 
Sbjct: 531 VIDTLQMARDLFPDFKKYGLGDLNKALGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588

Query: 181 -------INFGFKTN 188
                  IN GF+ N
Sbjct: 589 GIEYLKDINKGFEVN 603


>gi|146297347|ref|YP_001181118.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410923|gb|ABP67927.1| DNA polymerase III catalytic subunit, PolC type
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 1402

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG D++ DRIIEIGAV++ +    +R F  F+ P G K      +L GI   
Sbjct: 390 FVVVDIETTGFDNQKDRIIEIGAVKIENGEIVDR-FSTFVDPEG-KIPIRISELTGIYQN 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P  S    EF  F +   A  +AHNA+FD+GF+    Q      +     IDTL 
Sbjct: 448 MVDNAPKLSDAILEFEKFCS--GAILVAHNAQFDIGFLKRSYQECGL--IFDYTYIDTLE 503

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++RR     S + LN + +   I + H   H A  D+   + ++I ++       +
Sbjct: 504 LSRRVLTDLSSHKLNKVAEFLNIELKHH--HRADSDAETTAKIFISLIEKLKSRGY 557


>gi|313885310|ref|ZP_07819061.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619416|gb|EFR30854.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 1435

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 66/215 (30%), Positives = 110/215 (51%), Gaps = 9/215 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   +   +VFD+ETTGL S  D+IIE+ AV++ +    + TF+ F+ PN +  S    +
Sbjct: 413 IALKEATYVVFDVETTGLSSVYDKIIELAAVKMKEGQVID-TFEAFINPN-QPLSSFTTE 470

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT+  ++D P    +  +F+DF   QN   +AHNA FD+GF+N   +RI  +   P 
Sbjct: 471 LTGITNAMVEDAPQEDVVLKDFYDF--SQNTILVAHNASFDIGFLNKGYERIGIEN-TPL 527

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL ++R  +P  + + LN+L KRYG+ +     H A+ DS     +  K++   + 
Sbjct: 528 PVIDTLELSRMVNPHLKSHRLNTLAKRYGVNLEQH--HRAVYDSETTGYLMYKLL-DQAL 584

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            +FG + +     +  +      +       L   
Sbjct: 585 ADFGMEYHHQLNNQLGQGDAFKQARPMHATLLVKE 619


>gi|288556947|ref|YP_003428882.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4]
 gi|288548107|gb|ADC51990.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4]
          Length = 1432

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 97/176 (55%), Gaps = 8/176 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + IIE+ AV++ +    +R F+ F  P+    +   ++L GITD+
Sbjct: 418 YVVFDVETTGLSAVYNTIIELAAVKIKNGEIIDR-FESFADPH-EPLTNTIIELTGITDD 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K +P    +  +F +F     A  +AHNA FD+GF+N   Q+I       + +IDTL 
Sbjct: 476 MVKGQPEVGEVLKDFHEFVGT--ATLVAHNASFDMGFLNVGYQKIGLGDA-TNPVIDTLE 532

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           + R  +P  +N  LN+LCK++ I +   S H A+ D+     +  KM+   ++ N 
Sbjct: 533 LGRFLYPELKNHRLNTLCKKFDIELV--SHHRAIYDAEATGYLLWKMVRDANERNV 586


>gi|331082627|ref|ZP_08331750.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400246|gb|EGG79888.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 1487

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  +  D+IIEIGAV++ +   T R F  F+ P          +L  I D 
Sbjct: 463 YVVFDIETTGFSALKDKIIEIGAVKVENGRITER-FSEFVNPQI-PIPFRIEELTSINDN 520

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   I  +F  F   +    +AHNA+FD+ FI    + I  +  D   ++DT+ 
Sbjct: 521 MVADAPTIDVILPKFEKFC--EGCVMVAHNAEFDMSFIRKNYEDIGIEREDT--VVDTVG 576

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +AR   P   R  L+++ K  G+++ H   H A+ D+   +D+++K +   ++ + 
Sbjct: 577 MARFLLPQLNRFKLDTVAKAVGVSLEHH--HRAVDDASCTADIFVKFIEMCAERDI 630


>gi|313888341|ref|ZP_07822012.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845744|gb|EFR33134.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 1012

 Score =  175 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 58/167 (34%), Positives = 98/167 (58%), Gaps = 9/167 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFDIETTGL S+ND+I EIGAV++ +    +R F   + P  ++     + L GI++  +
Sbjct: 2   VFDIETTGLSSRNDKITEIGAVKIKNGMIVDR-FSQLINPE-KEIPQVVVDLTGISNAMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +++P+   +  +F+DF   ++A  +AHNAKFD+ FI  E    N + +    I+DTL +A
Sbjct: 60  ENEPTIEEVILKFYDF--AKDAVLVAHNAKFDISFIRREYA--NNNLVFNHPILDTLVLA 115

Query: 131 RRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           R       R +L +LCK  G+++     H A+ D+   ++V+IK++ 
Sbjct: 116 RATMSDMKRFNLGTLCKNLGVSLVG--AHRAVNDAEATAEVFIKLIE 160


>gi|251797402|ref|YP_003012133.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2]
 gi|247545028|gb|ACT02047.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2]
          Length = 1437

 Score =  175 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/235 (31%), Positives = 117/235 (49%), Gaps = 15/235 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTGL   N++IIE+  V++ +  + +R F  F+ P+  K      +L  I DE
Sbjct: 421 YIVFDIETTGLSIINNKIIELAGVKMREGKEVDR-FSTFINPH-EKIPYHIQQLTNINDE 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P       EF DF    ++  +AHNA+FD+GFI A L+ I   P   + ++DTL 
Sbjct: 479 MVKDAPELEPKLREFIDFIG--DSILVAHNARFDIGFIQANLKSIGM-PDVTNPVLDTLE 535

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GFK 186
           +AR  HP    + LN+L  +Y +++ +   H A+ DS  L  V   ++   ++ N  G  
Sbjct: 536 LARFLHPTMKNHRLNTLSAKYKVSLDNH--HRAVDDSVALGGVLFGLINDAAERNITGLH 593

Query: 187 TNEDRFFKEEKKTVP---NISLLKRD--KPLFTRITKEELDEHDKTIQTLGKNAI 236
              D    +   + P   NI  L     K LF  ++     EH K +  + K+ +
Sbjct: 594 QLNDYVGLDISNSRPFHCNIYALNAAGKKNLFKMVSISH-TEHFKRVACIPKSKL 647


>gi|167746785|ref|ZP_02418912.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662]
 gi|167653745|gb|EDR97874.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662]
          Length = 1475

 Score =  175 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG +S+ DRIIEIGAV+++D   T  TF  F+ P       +  +L  ITDE
Sbjct: 449 FVVFDIETTGFNSQTDRIIEIGAVKVIDGEIT-ETFSEFINPQI-PIPFKITQLTTITDE 506

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +  +  ++   F +F    ++  +AHNA FD GFI+   +R++ D      I+DTL 
Sbjct: 507 MVMNADTIDAVLPRFLEFCG--DSVLVAHNAGFDTGFIHENAKRLDLDFHPT--IVDTLG 562

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R      ++  L++LCK   I +   + H A+ D+     ++IK +
Sbjct: 563 LSRSLMTHLAKFTLDNLCKNLNIKLE--THHRAVDDATATGKIFIKFV 608


>gi|315111548|ref|YP_813210.2| DNA polymerase III, alpha subunit ( type) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1445

 Score =  175 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 8/175 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++      ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+    S   + 
Sbjct: 419 MKYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTIN 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE ++     + +  +F DF+   N     HN +FDVGF++A L+R    P    
Sbjct: 477 LTSITDEMVQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DTL ++R  HP  SR+ L+SLC++Y + + H   H A  D+     +  K++
Sbjct: 534 PVVDTLEVSRLLHPEQSRHTLDSLCRKYNVALEHH--HRANQDAEATGYLMFKLL 586


>gi|146341316|ref|YP_001206364.1| DNA-directed DNA polymerase [Bradyrhizobium sp. ORS278]
 gi|146194122|emb|CAL78141.1| hypothetical protein; putative DNA-directed DNA polymerase
           [Bradyrhizobium sp. ORS278]
          Length = 737

 Score =  175 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 9/164 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG  S  DRI EIGAV++ ++    + +   + P  R    + ++L GIT++
Sbjct: 563 YVVVDIETTGSWSSGDRITEIGAVKVRNHQLVEQ-WHSLINPQ-RPIPAKIVELTGITNQ 620

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P F  I   F  F    +  ++AHN  FD GF+++E +R+ +    P   + T  
Sbjct: 621 MVRDAPVFHEIADSFMAFMG--DGIFVAHNVNFDYGFLSSEFERLERRFRFP--KLCTCV 676

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             RR++P      L  LC  YGI +     H AL D+   + + 
Sbjct: 677 GMRRRYPGHTSYGLGKLCAIYGIELDDH--HRALCDARAAAHLL 718


>gi|323701859|ref|ZP_08113529.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
           574]
 gi|323533163|gb|EGB23032.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
           574]
          Length = 1421

 Score =  175 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 99/201 (49%), Gaps = 19/201 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +   +  +V D ETTG   + D IIEIGAV+ ++  + +R F   + P+ ++   E  KL
Sbjct: 403 KLTDLTYVVLDFETTGFSPQTDEIIEIGAVKFINGMEVDR-FGTLVKPD-KEIPFEVSKL 460

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT + +KD P      +   +F    +A  +AHNA FD+ F+    ++  +  +  ++
Sbjct: 461 TGITLDMVKDAPDARQALAALREFIG--DAVLVAHNAAFDLSFLKVGFRKYLQVEV-TNQ 517

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG--- 178
           ++DTL  AR   P  + + L++L K + I +++   H A+ D+     ++  ++      
Sbjct: 518 VVDTLGTARVLLPHLKNHKLDTLVKEFKIELANH--HRAVDDAAATGKLWQVLLTKAVEQ 575

Query: 179 --------SQINFGFKTNEDR 191
                   SQ+  G  T++ R
Sbjct: 576 GAQDLAALSQLGQGVSTDKLR 596


>gi|240142703|ref|YP_002967216.1| Protein with DNA-directed DNA polymerase-like domain
           [Methylobacterium extorquens AM1]
 gi|240012650|gb|ACS43875.1| Protein with DNA-directed DNA polymerase-like domain
           [Methylobacterium extorquens AM1]
          Length = 754

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 9/169 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTGL   N DR+IE+GAVE++D     R FQ    P G   S     + GI+
Sbjct: 543 RFVVIDFETTGLSPNNGDRVIEVGAVEIVDGR-IGRRFQSLANP-GFPVSARITAITGIS 600

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  L D P  + +  E   F   + A  +AHNA FD  F+ AE++R+     D   ++ T
Sbjct: 601 NAMLVDAPPLAEVIREVSAFI--EGATLVAHNAGFDRRFLQAEMERLGL--WDDREMLCT 656

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + + +R +P      L  L +  G+ +   + H AL D+   +++++ M
Sbjct: 657 MRLGKRAYPGLGSYKLAFLAEHAGVALPD-AMHRALADAMATAELFLVM 704


>gi|116515093|ref|YP_802722.1| DNA polymerase III, e subunit [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256947|gb|ABJ90629.1| DNA polymerase III, e subunit [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 231

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 81/241 (33%), Positives = 129/241 (53%), Gaps = 18/241 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           MI+KN +R++  DIETTG++         +IIEIG +E ++   T R    +L P  R  
Sbjct: 1   MIKKN-LRQVFLDIETTGMNKYGCIYLNHKIIEIGIIETINRKYTGRYIHYYLYPQ-RSI 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA--ELQRI 113
              A K+HGI++ FL +KP+F  I+ E ++F   +N+E I HN+ FD+ F++    L  I
Sbjct: 59  ESSAYKIHGISESFLSNKPTFKDIYKEIFNFI--KNSEIIVHNSNFDISFLDYEFFLLNI 116

Query: 114 NKDPLDPSRII-DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             + +     I DTL IAR+  P  +N+L++LC RY IT  +R+ H ALLD+ +L  +Y+
Sbjct: 117 GINKIKTFSTITDTLFIARKLFPGKKNNLDALCARYKITNINRNFHSALLDAKILMKLYM 176

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
            M     +INF       R + ++ K   N     +        TK+E   H + ++ + 
Sbjct: 177 YMTSIQKEINF------SRNYIKKIKIPKNFFKYYKKPLKIIFATKKENQTHLEYMKKII 230

Query: 233 K 233
           K
Sbjct: 231 K 231


>gi|116093619|gb|ABJ58772.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1411

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 8/175 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++      ++FD+ETTGL S  D IIEIGAV++ +    +R F  F+ P+    S   + 
Sbjct: 385 MKYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTIN 442

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE ++     + +  +F DF+   N     HN +FDVGF++A L+R    P    
Sbjct: 443 LTSITDEMVQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQ 499

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DTL ++R  HP  SR+ L+SLC++Y + + H   H A  D+     +  K++
Sbjct: 500 PVVDTLEVSRLLHPEQSRHTLDSLCRKYNVALEHH--HRANQDAEATGYLMFKLL 552


>gi|319779077|ref|YP_004129990.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9]
 gi|317109101|gb|ADU91847.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9]
          Length = 239

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 85/237 (35%), Positives = 128/237 (54%), Gaps = 16/237 (6%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR+I  D ETTGL  K   R+IE+G  E++D   T    Q++  P  R+   EALK+HGI
Sbjct: 1   MRQICLDTETTGLSWKDGHRVIELGCCEIIDGLLTGNNLQIYFNPE-REVDEEALKVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122
           ++EFL DKP FS    +  ++   ++A+ + HNA+FD+GF+N EL    K  L+    + 
Sbjct: 60  SNEFLSDKPLFSDKADKIIEYL--KDAQLVIHNAEFDMGFLNYELSLCGKPKLETFIHNP 117

Query: 123 IIDTLSIARRK-HPSSRNDLNSLCK-----RYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +IDT  +AR     S+   LN L K      Y    + R  HGALLD+ +L+ V+IK+  
Sbjct: 118 VIDTRELARENGFSSAVITLNKLYKDLVDESYK-QNTDRELHGALLDAVMLAKVFIKLNS 176

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           G ++I F   +       +   +  NI L K +  L  + ++EE+  H+  I TL K
Sbjct: 177 GQNEI-FLETSARSEASDDLGFSSQNIDLSKLNLKLI-KASEEEIAAHNDYIATLSK 231


>gi|15805882|ref|NP_294580.1| DNA polymerase III subunit epsilon [Deinococcus radiodurans R1]
 gi|6458571|gb|AAF10431.1|AE001939_8 DNA polymerase III, epsilon subunit, putative [Deinococcus
           radiodurans R1]
          Length = 197

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 92/175 (52%), Gaps = 12/175 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRK-----NSPEALKL 62
           +VFD+ETTG    +  I+EIGAV ++   + + T  F+  + P            +A ++
Sbjct: 24  VVFDLETTGFSPASAAIVEIGAVRIV-GGQIDETLKFETLVRPTRPDGSLLSIPWQAQRV 82

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI+DE ++  P+   +  +F+DF +   +  +AHN  FD GF+ A  +R+      P R
Sbjct: 83  HGISDEMVRRAPAIKDVLPDFFDFVD--GSAVVAHNVSFDGGFMRAGAERLGLSWA-PER 139

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            + T+ ++RR  P  R ++L  L +R G+  +   +H +  D  + +  Y++++ 
Sbjct: 140 ELCTMQLSRRAFPRERTHNLTVLAERLGLEFAPGGRHRSYGDVQVTAQAYLRLLE 194


>gi|269123116|ref|YP_003305693.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
           12112]
 gi|268314442|gb|ACZ00816.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
           12112]
          Length = 1465

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG    ND+IIEIGAV+L +    +R F  F+ P       + ++L GI D 
Sbjct: 404 FVVFDIETTGFSPINDKIIEIGAVKLKNGKVLDR-FSEFVNPQT-IIPKKIVELTGINDN 461

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD      +   F +F   +    +AHNAKFDVGFI+ + + +N +       IDTL 
Sbjct: 462 MVKDSDIIDKVMPRFLEFV--KGTTLVAHNAKFDVGFISKKCEDLNLE--TDFSYIDTLE 517

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++       R +L++L KR+ I + +   H A+ D++  ++++ K++
Sbjct: 518 WSKILVDDVKRFNLDTLTKRFNIKLENH--HRAVDDANATAELFKKLL 563


>gi|148255092|ref|YP_001239677.1| hypothetical protein BBta_3691 [Bradyrhizobium sp. BTAi1]
 gi|146407265|gb|ABQ35771.1| hypothetical protein BBta_3691 [Bradyrhizobium sp. BTAi1]
          Length = 720

 Score =  175 bits (443), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG  S  DRI EIGAV++ ++      +   + P  R    + ++L GIT++
Sbjct: 546 YVVVDIETTGSWSSGDRITEIGAVKVRNHQIV-EEWHSLINPQ-RPIPAKIVELTGITNQ 603

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P F  I   F  F    +  ++AHN  FD GF++ E +R+ +    P   + T  
Sbjct: 604 MVRDAPFFHDIADSFIAFMG--DGIFVAHNVNFDYGFLSYEYERLERRFRFP--KLCTCV 659

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             RR++P  +   L  LC  YGI +     H AL D+   + +   +
Sbjct: 660 GMRRRYPGHKSYGLGKLCAIYGIALDDH--HRALCDARAAARLLHLI 704


>gi|329919876|ref|ZP_08276814.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 1401G]
 gi|328936966|gb|EGG33396.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 1401G]
          Length = 1424

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + 
Sbjct: 400 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 457

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +   
Sbjct: 458 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 514

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176
            ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++     
Sbjct: 515 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 572

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              + N G   +  +F +  K+  PN
Sbjct: 573 RFQEANLGKMNDYAKFGQVYKRAKPN 598


>gi|309809542|ref|ZP_07703400.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308170214|gb|EFO72249.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 1424

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + 
Sbjct: 400 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 457

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +   
Sbjct: 458 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 514

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176
            ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++     
Sbjct: 515 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 572

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              + N G   +  +F +  K+  PN
Sbjct: 573 RFQEANLGKMNDYAKFGQVYKRAKPN 598


>gi|299144044|ref|ZP_07037124.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518529|gb|EFI42268.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 1421

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 98/168 (58%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG   + D I EIGAV+++D    +R F   + P   K     ++L GI+++
Sbjct: 406 FVVFDIETTGFSPQVDEITEIGAVKIVDGVIVDR-FSQLVNP-MIKIPDRVVELTGISND 463

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           F+KD+P+   +  +F DF   +N+  +AHNA FD+ FI  ++ + N        ++DTLS
Sbjct: 464 FVKDEPTIDKVIVDFNDFC--KNSVLVAHNAGFDISFIRRDMLKYNLSF--NFTVLDTLS 519

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR       R +L +L K+ G+++ +   H A+ D+   ++V+IKM+
Sbjct: 520 LARAIIKDIKRFNLTALSKKLGVSLVN--AHRAVNDAEATAEVFIKML 565


>gi|325282490|ref|YP_004255031.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP]
 gi|324314299|gb|ADY25414.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP]
          Length = 185

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 92/174 (52%), Gaps = 10/174 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCP-----NGRKNSPEALKLH 63
           +VFD+ETTGL  + D I+EIGA+ + D    T   +Q  + P             A ++H
Sbjct: 12  VVFDLETTGLSPERDGIVEIGALRIRDGRVVTEDPYQTLVRPQNSLGESVTIPWRAERIH 71

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++E +   PS + +  EF ++    +A  +AHN  FD GF+ A  +        P R 
Sbjct: 72  GISNEMVVAAPSIAQVLPEFLEWAG--DAPLVAHNIGFDSGFMRAAARHCGLRWA-PQRE 128

Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           I T+ ++RR  P   R++L+SL  R G++ S + +H +L D  + +  Y++++ 
Sbjct: 129 ICTVQLSRRAFPRERRHNLDSLAGRLGLSFSPQGRHRSLGDVEVTAAAYLRLLE 182


>gi|309807200|ref|ZP_07701174.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166421|gb|EFO68626.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 03V1-b]
          Length = 1424

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 12/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + 
Sbjct: 400 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 457

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +++    + +  +F DF+  Q+     HN +FD+GF+NA L+R N D +   
Sbjct: 458 LTSITDEMVQNADDENIVIRQFQDFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 514

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176
            ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++     
Sbjct: 515 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 572

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              + N G   +  +F +  K+  PN
Sbjct: 573 RFQEANLGKMNDYAKFGQVYKRAKPN 598


>gi|259501583|ref|ZP_05744485.1| DNA polymerase III [Lactobacillus iners DSM 13335]
 gi|302191443|ref|ZP_07267697.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus iners
           AB-1]
 gi|259167101|gb|EEW51596.1| DNA polymerase III [Lactobacillus iners DSM 13335]
          Length = 1420

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + 
Sbjct: 396 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 453

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +   
Sbjct: 454 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 510

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176
            ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++     
Sbjct: 511 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 568

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              + N G   +  +F +  K+  PN
Sbjct: 569 RFQEANLGKMNDYAKFGQVYKRAKPN 594


>gi|315653430|ref|ZP_07906352.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
 gi|315489355|gb|EFU78995.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
          Length = 1424

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + 
Sbjct: 400 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 457

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +   
Sbjct: 458 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 514

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176
            ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++     
Sbjct: 515 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 572

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              + N G   +  +F +  K+  PN
Sbjct: 573 RFQEANLGKMNDYAKFGQVYKRAKPN 598


>gi|312873343|ref|ZP_07733396.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2052A-d]
 gi|311091133|gb|EFQ49524.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2052A-d]
          Length = 1420

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + 
Sbjct: 396 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 453

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +   
Sbjct: 454 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 510

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176
            ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++     
Sbjct: 511 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 568

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              + N G   +  +F +  K+  PN
Sbjct: 569 RFQEANLGKMNDYAKFGQVYKRAKPN 594


>gi|312875787|ref|ZP_07735779.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2053A-b]
 gi|311088691|gb|EFQ47143.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2053A-b]
          Length = 1424

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + 
Sbjct: 400 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 457

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +   
Sbjct: 458 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 514

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176
            ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++     
Sbjct: 515 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 572

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              + N G   +  +F +  K+  PN
Sbjct: 573 RFQEANLGKMNDYAKFGQVYKRAKPN 598


>gi|240146857|ref|ZP_04745458.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
 gi|257200990|gb|EEU99274.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
          Length = 697

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 9/193 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG     ++IIEIGAV+++ + +    F  F+ P          +L  I D+
Sbjct: 475 YVVFDLETTGFSPDKNKIIEIGAVKVV-HGEITERFSTFVNPE-VPIPYRIEELTSIRDD 532

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P   +I  +F +F    +A  +AHNA FD+ FI    +R   +      IIDT++
Sbjct: 533 MVIDAPKIETILPQFMEFCG--DAIMVAHNADFDMSFIIKNCERQGIE--KEFTIIDTVA 588

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR   P   R  L+++ K  G+++ +   H A+ D+   +++++K +            
Sbjct: 589 LARILLPQLNRFKLDTVAKALGVSLENH--HRAVDDAGCTAEIFVKFVKMLHDRGMETLD 646

Query: 188 NEDRFFKEEKKTV 200
             ++  +   +T+
Sbjct: 647 QVNQMGQASPETI 659


>gi|312871361|ref|ZP_07731457.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 3008A-a]
 gi|312872402|ref|ZP_07732471.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311091984|gb|EFQ50359.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311093113|gb|EFQ51461.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 3008A-a]
          Length = 1420

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + 
Sbjct: 396 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 453

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +   
Sbjct: 454 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 510

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176
            ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++     
Sbjct: 511 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 568

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              + N G   +  +F +  K+  PN
Sbjct: 569 RFQEANLGKMNDYAKFGQVYKRAKPN 594


>gi|254302688|ref|ZP_04970046.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148322880|gb|EDK88130.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 1454

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 100/195 (51%), Gaps = 16/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + ++   +VFDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++
Sbjct: 421 KIDEEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEI 478

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             ITDE + ++P    +  +F DF    +A  +AHNA FD+GFI  ++++   +    S 
Sbjct: 479 TSITDEQVANEPKIDEVIGKFIDFVG--DAVLVAHNAPFDMGFIKRDVKKY-LNIDLQSS 535

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ- 180
           +IDTL +AR   P   +  L  L K  G+ +     H A+ DS   ++++I  +    + 
Sbjct: 536 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLDKYKEK 593

Query: 181 -------INFGFKTN 188
                  IN GF+ N
Sbjct: 594 GLEYIKDINVGFEVN 608


>gi|258511479|ref|YP_003184913.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478205|gb|ACV58524.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 240

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 96/237 (40%), Gaps = 15/237 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R  + R +V D ETTGL  +  R++E+  VE+    +    +   + P G    PEA  
Sbjct: 1   MRLQEARFVVVDTETTGLPPEG-RVVELALVEVGLECEPQIVYSALVDP-GCPIPPEASA 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H ITD  +  KP  S ++ +   +    +A  +AHNA+FD G +          P    
Sbjct: 59  VHHITDRDVAGKPRLSQVWPKVLGYIG--DAILVAHNAEFDRGML----------PETGR 106

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             I +  +A+       ++    L    GI +     H AL D+ + + V+ + +    +
Sbjct: 107 PWICSKRLAQHLWRDAPKHSNQVLRYWLGIDVEVGQPHRALGDAIVTAHVFQRELRAYLE 166

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
             +    +E   F E    V  +   K        +  + LD   + +Q L  +  W
Sbjct: 167 AGYPDDVDELIAFAESPIEVQTMPFGKHKGMPLKEVPLDYLDWALRNLQDLSPDLRW 223


>gi|325911796|ref|ZP_08174200.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 143-D]
 gi|325476302|gb|EGC79464.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 143-D]
          Length = 1416

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + 
Sbjct: 392 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 449

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +   
Sbjct: 450 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 506

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176
            ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++     
Sbjct: 507 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 564

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              + N G   +  +F +  K+  PN
Sbjct: 565 RFQEANLGKMNDYAKFGQVYKRAKPN 590


>gi|260589219|ref|ZP_05855132.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
 gi|260540300|gb|EEX20869.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
          Length = 1487

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 88/169 (52%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  +  D+IIEIGAV++ +   T R F  F+ P          +L  I D 
Sbjct: 463 YVVFDIETTGFSALKDKIIEIGAVKVENGRITER-FSEFVNPQI-PIPFRIEELTSINDN 520

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   I  +F  F   +    +AHNA+FD+ FI    + I  +  D   ++DT+ 
Sbjct: 521 MVADAPTIDVILPKFEKFC--EGCVMVAHNAEFDMSFIRKNYEDIGIEREDT--VVDTVG 576

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +AR   P   R  L+++ K  G+++ H   H A+ D+   +D+++K + 
Sbjct: 577 MARFLLPQLNRFKLDTVAKAVGVSLEHH--HRAVDDASCTADIFVKFIE 623


>gi|153810942|ref|ZP_01963610.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174]
 gi|149832830|gb|EDM87913.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174]
          Length = 1439

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFDIETTG      +IIEIGAV + +   T+R F  F+ P          +L  I D
Sbjct: 412 KFVVFDIETTGFSPLTCQIIEIGAVRVENGVITDR-FSTFVNPK-VPIPYRIEQLTSIND 469

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P   +I  +F +F     A  +AHNA FD+ FI    +R           +DT+
Sbjct: 470 SMVMDAPDIQTILPQFLEFCA--GAVMVAHNADFDMSFIIENCKRQGLP--QEYTYVDTV 525

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-FGF 185
            +AR   P+  R  L+++ K  G+++ H   H A+ D+   ++++++ +    + + F  
Sbjct: 526 GMARFLLPALNRFKLDTVAKAVGVSLDHH--HRAVDDAACTAEIFVRFVEMLKERDIFDM 583

Query: 186 KTNEDR 191
            T   +
Sbjct: 584 DTLNQQ 589


>gi|325913471|ref|ZP_08175837.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 60-B]
 gi|325477240|gb|EGC80386.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 60-B]
          Length = 1424

 Score =  174 bits (442), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + 
Sbjct: 400 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 457

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +   
Sbjct: 458 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 514

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176
            ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++     
Sbjct: 515 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 572

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              + N G   +  +F +  K+  PN
Sbjct: 573 RFQEANLGKMNDYAKFGQVYKRAKPN 598


>gi|319937397|ref|ZP_08011804.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
 gi|319807763|gb|EFW04356.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
          Length = 1438

 Score =  174 bits (442), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 6/180 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I    +  I FD+ETTGL   +D I E GAV++ +  +  R  Q  + PN R  S +   
Sbjct: 390 ISLKDLTFISFDLETTGLSVMDDDITEFGAVKIKNGQEIGR-LQSLIKPNKR-ISQKITN 447

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  IT+E +KD P+      +  +FF +     +AHNA FDVGF+N  LQR   + L  +
Sbjct: 448 LTHITNEDVKDAPTIQEYIPKILEFFGDD--VIVAHNATFDVGFLNEILQRHGYEKL-KN 504

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             ID+L++A +  P  +   L ++ + Y I       H A  D+ +L+ V+  M+    Q
Sbjct: 505 PAIDSLALAWKLLPQLKGFRLGNVARYYRIAYDGDDAHRADYDAEVLAGVFNMMLHDMMQ 564


>gi|298244280|ref|ZP_06968086.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297551761|gb|EFH85626.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 684

 Score =  174 bits (442), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 9/177 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             ++  +V D ETTGL    DR+IE+  V + +  +   TFQ  + P  R+  P  ++  
Sbjct: 96  LEEVEFVVVDTETTGLRPGPDRVIEVAGVRMRNG-EILDTFQSLVHPE-RRIPPFIVRFT 153

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+ E L D P    I  +F  F   + A  + HN  FDV F+  E Q +      P   
Sbjct: 154 GISPEMLADAPKARDIMPDFLRFI--EGATLVGHNLSFDVNFLTHEAQLLGLPF--PVEG 209

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +DT+ ++RR  P   R  L+ + +   I   +R  H AL D+ + +DV+ +++    
Sbjct: 210 LDTILLSRRLLPGLKRFKLDMVAQYLQIQTHNR--HRALGDAQVTADVFARLLERAK 264


>gi|226313025|ref|YP_002772919.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
 gi|226095973|dbj|BAH44415.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
          Length = 1434

 Score =  174 bits (442), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 94/168 (55%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD ETTGL++    IIEI AV++      ++ +   + P  +   P+  ++ GIT+E
Sbjct: 421 YVVFDTETTGLNASEHTIIEIAAVKMKGAEIIDQ-WTELIDPQLQ-IGPKTTEITGITNE 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+ + +   +  +F DF    +A  +AHNA+FD  FINA  +RI  +P   +  +DTL 
Sbjct: 479 MLRGQETLDVVLRKFKDF--TGDAILVAHNAEFDKAFINACAKRIGMEPW-TNPFLDTLP 535

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR  +   RN  L SL K++ + + +   H AL D+  L+ V+ +M+
Sbjct: 536 LARLMYKGMRNYRLGSLAKKFNVELIN--AHRALDDTVALAHVFQQML 581


>gi|218291538|ref|ZP_03495419.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238658|gb|EED05882.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 240

 Score =  174 bits (442), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 15/245 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++ +  R +V D ETTGL  +  R++E+  VE+    +    +   + P G    PEA  
Sbjct: 1   MKLSDARFVVVDTETTGLPPEG-RVVELALVEVGLEREPQIVYSALVDP-GCPIPPEASA 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H ITD  +  KP  S ++ +   +    +A  +AHNA+FD G +          P    
Sbjct: 59  VHHITDRDVAGKPRMSQVWPKVLGYIG--DAVLVAHNAEFDRGML----------PETGR 106

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             + +  + +   P   ++    L    GI +     H AL D+ + + V+ + +    +
Sbjct: 107 PWLCSKRLVQHLWPDAPKHANQVLRYWLGIDVEVGQPHRALGDALVTAHVFQRELRAYLE 166

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             +    +E   F E    V  +   K        +  + LD   + +Q L  +  W   
Sbjct: 167 AGYPDDVDELTAFAESPIEVQTMPFGKHKGMPLKEVPLDYLDWALRNLQDLSPDLRWSMQ 226

Query: 241 ISSNQ 245
            +  Q
Sbjct: 227 QALEQ 231


>gi|257066105|ref|YP_003152361.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
 gi|256797985|gb|ACV28640.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
          Length = 1365

 Score =  174 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL    DRI EIGA   ++  K    +   + P       + +++ GIT+E
Sbjct: 349 FVVFDLETTGLSRYKDRITEIGACR-VEGGKITEIYNELVNPE-MVIPEKIIEITGITNE 406

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P+   +   F DF   +++  +  N  FDVGF+     R+  D       +DTL 
Sbjct: 407 MVKDCPTIEEVLPGFLDFC--KDSILVGQNTDFDVGFVRENCHRMGLDF--NPIYLDTLP 462

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +AR       +  L+ + ++  I   +   H A  D+   + ++IKM
Sbjct: 463 MARALFSDMKKFSLDKIARKLEIPAFNH--HRASDDARATAQIFIKM 507


>gi|291563198|emb|CBL42014.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
           bacterium SS3/4]
          Length = 1376

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG     ++IIEIGAV++ +    +R    F+ P       +  +L GI D 
Sbjct: 415 YVVFDIETTGFSPIKNKIIEIGAVKVRNGEIIDR-MDEFVNPE-VPIPFDIERLTGINDA 472

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    +   +   F +F    +A  +AHNA FDV FI+     +         ++DT++
Sbjct: 473 MVMGADTVDKVLPRFLEFVG--DAALVAHNASFDVSFISHNAGLLGLSFDPT--VLDTVT 528

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +AR   P+  R  L+++ K  G+++ +   H A+ D+   + +++K + 
Sbjct: 529 LARALLPNLNRFKLDTVAKALGVSLENH--HRAVDDAEATAGIFLKFVE 575


>gi|309808831|ref|ZP_07702716.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
 gi|308167957|gb|EFO70090.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
          Length = 946

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + 
Sbjct: 400 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 457

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +   
Sbjct: 458 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 514

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176
            ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++     
Sbjct: 515 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 572

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              + N G   +  +F +  K+  PN
Sbjct: 573 RFQEANLGKMNDYAKFGQVYKRAKPN 598


>gi|325479569|gb|EGC82665.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 1369

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 23/208 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL    DRI EIGAV++ +   T   +   + P     S +   + GIT+E
Sbjct: 353 FVVFDLETTGLSKYKDRITEIGAVKVENGKIT-EEYNQLVNPE-MVISEKITDITGITNE 410

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P    +  +F  F    ++  +  N  FDVGFI     R+  +       +DTL 
Sbjct: 411 MVEDCPKIDEVMKDFLKFCG--DSILVGQNTDFDVGFIKENCFRMEIEF--NPLYLDTLP 466

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR       +  L+ + ++  I   +   H A  D+   + ++IKM             
Sbjct: 467 MARALFSDMKKFSLDKIARKLEIPAFNH--HRASDDARATAQIFIKMF------------ 512

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215
             DR  K    ++ NI+ LK  +P    
Sbjct: 513 --DRIMKMNGISLSNINKLKSYRPKAKH 538


>gi|124002035|ref|ZP_01686889.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134]
 gi|123992501|gb|EAY31846.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134]
          Length = 463

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + D+ETTGL   +D+I EI   +  D      +F   + P     S    ++ GIT++
Sbjct: 2   YTIIDVETTGLRPTDDKITEIAIYKH-DGESVVDSFHSLVNPECY-ISDRITQITGITND 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P F  I  +       +   ++AHNA FD GF+  E + +        + + T+ 
Sbjct: 60  MVANAPKFYEIAKDILAI--TEGTVFVAHNAHFDYGFVREEFKALGYKF--TRKTLCTVR 115

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++R+  P      L  LCK + I +++   H A  D+    +V+ K++ 
Sbjct: 116 VSRKVFPGLPSYSLAKLCKHFKIQLTNH--HRASADALATVEVFEKLLE 162


>gi|160934103|ref|ZP_02081490.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753]
 gi|156866776|gb|EDO60148.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753]
          Length = 1451

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FD+ETTGL + NDRI EIGAV + +   T+  F  F+ P  R    +  +L GI D 
Sbjct: 434 YISFDLETTGLSAANDRITEIGAVRIHNGEITD-VFNTFVNPE-RPIPAKITELTGINDS 491

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P        F +F  ++    +AHNA FD  FI A   R N D    +  +DT+ 
Sbjct: 492 MVIDAPKEKEAVEAFLEFCGKEP-VLLAHNAPFDTSFIQAVAARHNLDF--SNTYLDTVP 548

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + R   P    + L+++ K     ++  + H A  D+ +L+++++ ++
Sbjct: 549 MCRAMLPGIKNHKLDTVAKHLK--LAPFNHHRASDDAMVLANIFLVLL 594


>gi|85706434|ref|ZP_01037528.1| putative exonuclease [Roseovarius sp. 217]
 gi|85669207|gb|EAQ24074.1| putative exonuclease [Roseovarius sp. 217]
          Length = 688

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 102/199 (51%), Gaps = 10/199 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61
            + +  +VFD ETTGL  +  D I++I  + +++        F + + P GR   P + +
Sbjct: 489 LSDLSFVVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGECFDMLVNP-GRAIPPASTR 547

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H I+DE ++  P        F DF   Q A  +AHNA FD+ F+  + + I +   +P 
Sbjct: 548 VHHISDEMVQGAPGIVEAGRRFHDFC--QGAVLVAHNAPFDLAFLRLKEKVIGRRFDNP- 604

Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++ T+ ++      S ++ L++LC R+GITI   ++H A+ D+   ++V+++M+  G  
Sbjct: 605 -VLCTVLMSAGLFDHSGQHTLDALCDRFGITIPPEARHTAMGDTVATAEVFVRML--GLL 661

Query: 181 INFGFKTNEDRFFKEEKKT 199
              G  T      +E + T
Sbjct: 662 QAKGVTTLGGAIAEEGRMT 680


>gi|224476387|ref|YP_002633993.1| DNA polymerase III PolC [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420994|emb|CAL27808.1| homolog of DNA polymerase III, alpha subunit [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 1437

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 109/204 (53%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  P+ R  S     L  I+D+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHDGEIIDK-FERFSNPHER-LSDTIKNLTHISDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF ++    +A ++AHNA FD+GFI+   +R        + +IDTL 
Sbjct: 480 MLVDAPEIDDVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERAGLGN-YTNGVIDTLE 536

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+    ++      
Sbjct: 537 LSRTINTEFGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMLKQVEELGV---- 590

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                 K+  +++ N    KR +P
Sbjct: 591 ---TNHKDINQSLSNEDAYKRARP 611


>gi|118443832|ref|YP_878213.1| DNA polymerase III PolC [Clostridium novyi NT]
 gi|118134288|gb|ABK61332.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           novyi NT]
          Length = 1444

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 91/176 (51%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  S+ D+IIE GAV++ + +  + +F  F+ P   K   +  +L  IT++
Sbjct: 431 FVVFDLETTGFSSQYDKIIEFGAVKIKNGNIID-SFSAFVNPEI-KIPYKITELTSITND 488

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD  +   +  +F  F   +    +AHN+ FD+ FI    + +N +      ++DT+ 
Sbjct: 489 DVKDAETIDKVLPKFIKF--AEGTVLVAHNSNFDMSFIRKNCKDLNIE--CNYTVMDTIP 544

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +A+   P   R  LN++ K  G+++ +   H A+ D+    D+ +       ++N 
Sbjct: 545 LAKFLFPELKRYKLNTIAKHLGVSLENH--HRAVDDAKATGDILVHCFKLLKEMNI 598


>gi|237739760|ref|ZP_04570241.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
 gi|229423368|gb|EEO38415.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
          Length = 1449

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 16/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + ++   +VFDIETTGL+S  ++IIEIGAV++      +R +   + P G        ++
Sbjct: 416 KIDEEEFVVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDR-YSQLINP-GISIPYHITEI 473

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             IT+E + ++P    +  +F DF    +A  +AHNA FD+GFI  +++      L+ + 
Sbjct: 474 TSITNEQVANQPKIDEVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKEYLNIDLE-NS 530

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ- 180
           +IDTL +AR   P   +  L  L K  G+ +     H A+ DS   ++++I  +    + 
Sbjct: 531 VIDTLQMARDLFPDFKKYGLGDLNKSLGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588

Query: 181 -------INFGFKTN 188
                  IN GF+ N
Sbjct: 589 GIEYLKDINKGFEVN 603


>gi|225388986|ref|ZP_03758710.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme
           DSM 15981]
 gi|225044966|gb|EEG55212.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme
           DSM 15981]
          Length = 1561

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 17/195 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG   + +RIIEIGAV++ D   T++ F  F+ P+      +  KL  I D 
Sbjct: 538 YVVFDIETTGFSPEKNRIIEIGAVKVTDGKITDK-FSTFVNPD-VPIPFDIEKLTSINDA 595

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P    I  +F +F    +A  +AHNA FDVGFI    ++          ++DT++
Sbjct: 596 MVLPYPKIDVILPQFLEFVG--DAALVAHNASFDVGFIGHYAEKQGLAF--NPTVLDTVT 651

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVG-----GS 179
           +AR   P+  R  L+++ K   I++++   H A+ D+   +++   ++KM+         
Sbjct: 652 MARLLLPNLNRFKLDTVAKALNISLANH--HRAVDDAGCTAEIFAAFVKMLRDRDVETLD 709

Query: 180 QINFGFKTNEDRFFK 194
           Q+N     NED   K
Sbjct: 710 QLNSLNAMNEDTIRK 724


>gi|295094742|emb|CBK83833.1| DNA polymerase III catalytic subunit, PolC type [Coprococcus sp.
           ART55/1]
          Length = 1603

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL  K+++IIEIGAV++ D  +   TF  F+ P G     +  +L  I D+
Sbjct: 547 YVVFDIETTGLSKKHNKIIEIGAVKVKDG-EVVDTFSEFINP-GVPIPYQIEQLTSINDD 604

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P F  I   F +F  +     +AHNA FD GF+    + +       + ++DT++
Sbjct: 605 MVKDAPMFDVIVPRFVEFCGDD--IVVAHNASFDTGFVRMNAEELGLKF--DNTVLDTMT 660

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++    P   +  L+ +CK   +  +H   H A+ D+   + V+ K++
Sbjct: 661 LSHILLPELGKFTLDRVCKELKVVNAHH--HRAIDDAEATAKVFFKLL 706


>gi|258510511|ref|YP_003183945.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477237|gb|ACV57556.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 240

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 15/237 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R  + R +V D ETTGL  +  R++E+  VE+    +    +   + P G    PEA  
Sbjct: 1   MRLQEARFVVVDTETTGLPPEG-RVVELALVEVGLEREPQIVYSALVDP-GCPIPPEASA 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H ITD  +  KP    ++ +  ++    +A  +AHNA+FD G +          P    
Sbjct: 59  VHHITDRDVAGKPRLFQVWPKVLEYIG--DAILVAHNAEFDRGML----------PETGR 106

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             I +  +A+       ++    L    GI +     H AL D+ + + V+ + +    +
Sbjct: 107 PWICSKRLAQHLWRDAPKHSNQVLRYWLGIDVEVGQPHRALGDAIVTAHVFQRELRAYLE 166

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
             +    ++   F E    V  +   K        +  + LD   + +Q L  +  W
Sbjct: 167 AGYPDDVDDLIAFAESPIEVQTMPFGKHKGMPLKDVPLDYLDWALRNLQDLSPDLRW 223


>gi|168187912|ref|ZP_02622547.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum C str. Eklund]
 gi|169294244|gb|EDS76377.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum C str. Eklund]
          Length = 1441

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  S+ D+IIE GAV++ + +  + +F  F+ P   K      +L  IT+E
Sbjct: 428 FVVFDLETTGFSSQYDKIIEFGAVKIKNGNIID-SFSAFVNPE-MKIPYRITELTSITNE 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD  +   +  +F  F   ++   +AHN+ FD+ FI      +N +      ++DT+ 
Sbjct: 486 DVKDAETIDKVLPKFMKF--AEDTVLVAHNSNFDMSFIRKNCNDLNIE--CNYTVMDTIP 541

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A+   P   R  LN++ K  G+++ +   H A+ D+    D+ + 
Sbjct: 542 LAKFLFPELKRYKLNTIAKHLGVSLENH--HRAVDDAKATGDILVH 585


>gi|160893350|ref|ZP_02074137.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50]
 gi|156865042|gb|EDO58473.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50]
          Length = 1514

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 11/183 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTGL  K ++IIEIGAV++ D  + +R F  F+ P          +L  ITDE
Sbjct: 458 YIVFDIETTGLSQKKNKIIEIGAVKVKDGEEIDR-FSEFINPE-EPIPYSIEQLTSITDE 515

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+   I  +F +F  +     +AHNA FD GFI    + +       + I+DT++
Sbjct: 516 MVMHAPTVDVILPKFLEFCGDD--IVVAHNAAFDTGFIKKNAKDLGMKF--DNTIMDTMT 571

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++    P   +  L+ +CK   +   H   H A+ D++  + +++K+     +   G KT
Sbjct: 572 LSHVLLPELGKFTLDRVCKALNVKNEHH--HRAVDDANATAKIFVKLYEMLVER--GVKT 627

Query: 188 NED 190
            ED
Sbjct: 628 VED 630


>gi|34762810|ref|ZP_00143796.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887512|gb|EAA24596.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 1216

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 8/197 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + +    +VFDIETTGL+S  + IIEIGAV++      +R +   + P GR       ++
Sbjct: 416 KIDDEEFVVFDIETTGLNSHTNEIIEIGAVKIKSGRIMDR-YSQLINP-GRPIPYHITEI 473

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             ITDE + ++P    +  +F DF    +A  +AHNA FD+GFI  ++++   +      
Sbjct: 474 TSITDEQVANEPKIDKVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKY-LNIDYQCS 530

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +IDTL +AR   P   +  L  L K  G+ +     H A+ DS   ++++I  +    + 
Sbjct: 531 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588

Query: 182 NFGFKTNEDRFFKEEKK 198
              +  + +  F+   +
Sbjct: 589 GLEYMKDINTGFEVNVR 605


>gi|323489585|ref|ZP_08094812.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
 gi|323396716|gb|EGA89535.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
          Length = 1435

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++      ++ F+ F  P+  + S   + L GITD+
Sbjct: 421 FVVFDLETTGLSAVYDTIIELAAVKIKGGQIIDK-FESFANPH-HELSSTTIDLTGITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+ P    +  ++ ++  +     +AHNA FD+GF+    ++   D +     IDTL 
Sbjct: 479 MVKNAPEVEEVIRKYHEWAGDH--IMVAHNASFDMGFLYVCYKKYGIDTVH--ATIDTLE 534

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +AR  HP  +N  LN+L K++GI ++    H A+ D+   S +   ++    Q
Sbjct: 535 LARMLHPELKNHRLNTLAKKFGIELTQH--HRAIYDTEATSYLLTHLLKEADQ 585


>gi|293115337|ref|ZP_05790986.2| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810483|gb|EFF69688.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
          Length = 1476

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 8/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +K     +VFD+ETTGL   ND IIEIGAV++ +    +R F  F+ P          +L
Sbjct: 445 QKFDDTYVVFDLETTGLSPVNDSIIEIGAVKIQNKKVVDR-FSTFVNPKI-PIPYNIEQL 502

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI D  + D  +  +I  EF  F +   A  +AHNA+FDV FI  + + I     +   
Sbjct: 503 TGIDDSMVVDADTIENILPEFLKFCD--GAVMVAHNAEFDVTFIREKTKTILGKAFE-CT 559

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++DT+S+AR   P+  +  L+ + K   +++ H   H A+ D+   +D+++ ++ 
Sbjct: 560 VVDTVSLARALIPNLGKFTLDHVAKALNVSLLHH--HRAVDDAECCADIFLALVA 612


>gi|227486439|ref|ZP_03916755.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235620|gb|EEI85635.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
          Length = 1463

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL    D I EIGAV + +   T  T+   + P  R    + +++ GITD 
Sbjct: 448 FVVFDIETTGLLKYRDAITEIGAVRVENGEIT-ETYNQLINPE-RILPEKIVEITGITDA 505

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L DKP    +   F DF    ++  +  N  FDVGFI    +R+          +DTL 
Sbjct: 506 MLADKPKIDEVLPGFLDFCG--DSLIVGQNTDFDVGFIRENAKRLGLKFDPI--YLDTLP 561

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +AR       +  L+ + ++  I   +   H A  D+   + ++IKM
Sbjct: 562 MARALFDDMGKFSLDKIARKLDIPAFNH--HRASDDARATAQIFIKM 606


>gi|110638081|ref|YP_678290.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280762|gb|ABG58948.1| DNA polymerase III, epsilon subunit [Cytophaga hutchinsonii ATCC
           33406]
          Length = 449

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 9/171 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   + DIETTG  +  +RIIEI   +  D  K   T+Q  + P  R+       L GI 
Sbjct: 1   MMYSIIDIETTGGHASGNRIIEIAIYKF-DGEKITDTYQTLINPE-RRIPVFITSLTGID 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E + D P F+ +  E  DF   +++ ++AHN  FD  F+  ELQ +N     P   + T
Sbjct: 59  TEMVADAPVFADVAREITDF--TRDSVFVAHNVNFDYTFVKKELQALNMPYNLP--KLCT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           + ++R+  P      L +LC   GI + +R  H A  D+     +  K+++
Sbjct: 115 VRLSRKIFPGLPSYSLGNLCGSLGIDVQNR--HRAAGDAEATVRLLNKLLL 163


>gi|300784117|ref|YP_003764408.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
 gi|299793631|gb|ADJ44006.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
          Length = 567

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 86/212 (40%), Gaps = 17/212 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
                   +VFD+ETTG       I EIGAV++         F   + P G    P+ + 
Sbjct: 15  TPLRDTTFVVFDLETTGAPPGPSGITEIGAVKVRGGEVLGE-FATLVNP-GAPIPPQIVS 72

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT   + D P    +   F +F     A  +AHN+ FD   + A  +         +
Sbjct: 73  LTGITQAMVYDAPPIEEVLPAFLEFIG--GAVLVAHNSGFDTSHMRAACEGHGYVW-PKA 129

Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            ++ T+ +ARR  P     R +L +L   +G     R  H AL D+    DV   ++   
Sbjct: 130 TVVCTVRLARRVVPRDEVGRYNLTALALLFGART--RPTHRALDDARATVDVLHGLLERV 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
              N G  + E+         +P +++ +R K
Sbjct: 188 G--NLGVHSLEELM-----GYLPEVTVAQRAK 212


>gi|262066554|ref|ZP_06026166.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
 gi|291379736|gb|EFE87254.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
          Length = 1449

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 16/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + ++   +VFDIETTGL+S  ++IIEIGAV++      +R +   + P G        ++
Sbjct: 416 KIDEEEFVVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDR-YSQLINP-GISIPYHITEI 473

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             IT+E + ++P    +  +F +F    +A  +AHNA FD+GFI  +++      L+ S 
Sbjct: 474 TSITNEQVANQPKIDEVIGKFVEFIG--DAVLVAHNAPFDMGFIKRDIKEYLNIDLESS- 530

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ- 180
           +IDTL +AR   P   +  L  L K  G+ +     H A+ DS   ++++I  +    + 
Sbjct: 531 VIDTLQMARDLFPDFKKYGLGDLNKSLGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588

Query: 181 -------INFGFKTN 188
                  IN GF+ N
Sbjct: 589 GIEYLKDINKGFEVN 603


>gi|239827467|ref|YP_002950091.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus sp. WCH70]
 gi|239807760|gb|ACS24825.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           WCH70]
          Length = 921

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 9/180 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K R ++ D+ETTG    K DRII++G V + +    +R F  F  P  R   P   +L  
Sbjct: 2   KDRFVIIDLETTGNVPKKGDRIIQLGMVVIENGKIVDR-FSSFFNPE-RDIPPFVQQLTN 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT++ + D PSF+   ++  D    Q + ++AHN  FD+ F+  EL      P      I
Sbjct: 60  ITEQMVADAPSFAEEAAKVADML--QQSYFVAHNVSFDLQFLQEELHMAGLPPFS-GPTI 116

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           DT+ +AR   P+     L  L K+  I   H   H A  D+ + + ++I ++    Q+ F
Sbjct: 117 DTVELARIVFPTAESYKLGDLAKQLHID--HDQPHQADSDAEVTAKLFIALLNRLRQLPF 174


>gi|239995207|ref|ZP_04715731.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC
           27126]
          Length = 711

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 9/171 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           IR      +V DIETTG +S  +RI EIG V+L+   + +R FQ  L P  R+      +
Sbjct: 536 IRDPAQPYVVVDIETTGGNSSYNRITEIGMVKLVGGKEVDR-FQTLLNPQ-RRIPSNITR 593

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GI+D+ + D P F+ +     +F   ++A ++AHN  FD GFI  E  R+ +    P 
Sbjct: 594 LTGISDDMVADAPLFAEVAEHVANF--TEDAVFVAHNVNFDYGFIKQEFARLEQSFRRP- 650

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             + T+   RR +P      L +L K + I +     H AL D+   +++ 
Sbjct: 651 -KMCTVREMRRTYPGLPSYSLANLTKHFHIEMEQH--HRALSDAKAAAELL 698


>gi|332143320|ref|YP_004429058.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327553342|gb|AEB00061.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 715

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 9/171 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R      +V DIETTG ++  +RI EIG V+L+   + +R FQ  L P  R+      +
Sbjct: 536 VRDPAQPYVVVDIETTGGNNSYNRITEIGMVKLVGGKEVDR-FQTLLNPQ-RRIPSSITR 593

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GI+D+ + D P F+ +      F   ++A ++AHN  FD GFI  E  R+ +    P 
Sbjct: 594 LTGISDDMVADAPLFAEVADHIASF--TEDAVFVAHNVNFDYGFIKQEFARLEQSFRRP- 650

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             + T+   RR HP  S   L +L K + I +     H AL D+   +++ 
Sbjct: 651 -KMCTVREMRRTHPGLSSYSLANLTKHFHIDMEQH--HRALSDAKAAAELL 698


>gi|317471587|ref|ZP_07930931.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
 gi|316900902|gb|EFV22872.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
          Length = 1478

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG +S+ DRIIEIGAV+++    T  TF  F+ P       +  +L  ITDE
Sbjct: 452 FVVFDIETTGFNSQTDRIIEIGAVKVIAGEIT-ETFSEFINPQI-PIPFKITQLTTITDE 509

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +  +  ++   F +F    ++  +AHNA FD GFI+   +R++ D      I+DTL 
Sbjct: 510 MVMNADTIDAVLPRFLEFCG--DSVLVAHNAGFDTGFIHENAKRLDLDFHPT--IVDTLG 565

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R      ++  L++LCK   I +   + H A+ D+     ++IK +
Sbjct: 566 LSRSLMTHLAKFTLDNLCKNLNIKLE--THHRAVDDATATGKIFIKFV 611


>gi|256544693|ref|ZP_05472065.1| Gram-positive family DNA polymerase III, alpha subunit
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399582|gb|EEU13187.1| Gram-positive family DNA polymerase III, alpha subunit
           [Anaerococcus vaginalis ATCC 51170]
          Length = 1398

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 11/170 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            R IVFD+ETTGL    D+I EIGAV++ +       F   + P  +    + ++L GIT
Sbjct: 382 QRFIVFDLETTGLSKYIDKITEIGAVKIENGEII-EVFNELVNPE-KMIPQKVVELTGIT 439

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E + DKP    +  +F +F   +++ ++  N  FD+GFI      ++         +DT
Sbjct: 440 NEMVMDKPKIDEVLPKFLEF--SKDSYFVGQNTDFDIGFIKEACDNLSYKFEPI--YLDT 495

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKM 174
           L +AR   P   R  L+ L K+ G+   +H   H A  D+   + ++IK+
Sbjct: 496 LPMARAVFPTMGRFSLDKLAKKLGVGPFNH---HRASDDAMTTAKIFIKL 542


>gi|73662813|ref|YP_301594.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642441|sp|Q49X49|DPO3_STAS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|72495328|dbj|BAE18649.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 1438

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 106/204 (51%), Gaps = 15/204 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL ++ D+IIE+ AV++ D    ++ F+ F  P+ R  S     L  I+D+
Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVKDGEIIDK-FERFSNPHER-LSETIKNLTHISDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    + +EF  +    +A ++AHNA FD+GFI+   + +       + +IDTL 
Sbjct: 480 MLVDAPEIEEVLTEFKSWVG--DAIFVAHNASFDMGFIDTGYEHVGIGA-STNGVIDTLE 536

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +    ++ LN L K+YG+ ++    H A+ D+   + ++IKM+     +      
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYMFIKMLKQLEALGVHNH- 593

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
                 ++   ++ N    KR +P
Sbjct: 594 ------QDINTSLSNEDAYKRARP 611


>gi|169350436|ref|ZP_02867374.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552]
 gi|169292756|gb|EDS74889.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552]
          Length = 1439

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 6/173 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL   +D I E GAV++ +    +R  Q F+ P G+  S     L  IT+E
Sbjct: 402 YVAFDLETTGLSVIHDGITEFGAVKIKNGEVIDR-MQKFINP-GKTISSRISSLTNITNE 459

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K++P+   +  E  +FF   +   +AHNA FDVGF+N  L+R N   +  + IID+L+
Sbjct: 460 MVKNEPTIDKVLPEIMEFFG--DCILVAHNASFDVGFLNENLRRSNMSEI-KNPIIDSLA 516

Query: 129 IAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +AR    P     L ++C+ Y +       H A  D+ +L DV+  M+    Q
Sbjct: 517 LARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAKVLGDVFNLMIHQIMQ 569


>gi|332298225|ref|YP_004440147.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM
           12168]
 gi|332181328|gb|AEE17016.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM
           12168]
          Length = 186

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 8/171 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
              FD ETTGL  + +R+IEIGA+         R + + + P G+   P A  ++ ITD+
Sbjct: 23  FTAFDTETTGLKPEYERLIEIGAIRFDKNGIIAR-YDILINP-GKPIPPGASAINNITDD 80

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P   S+  +F  F   +++  +AHNA FD+ F+N EL+R   +PL  +   DT+ 
Sbjct: 81  MVRNCPLIESVLPDFLTFV--RDSVLVAHNAGFDLSFVNKELERSGFNPLKNNAA-DTVH 137

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +AR + P    + L SL   +GI +  R+ H A  D+ +  +V+++ +  G
Sbjct: 138 LARSRFPQLPNHKLQSLAAYFGIDV--RNAHRAEDDARVCMEVFLRCLNAG 186


>gi|307298437|ref|ZP_07578240.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915602|gb|EFN45986.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 1412

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTGL+ K D IIEIGA++ +  ++   TF  F+ P  ++ S     L GIT++
Sbjct: 402 FIVFDLETTGLNPKEDEIIEIGAIK-MKGNEILETFSSFVKPQ-KELSSLITSLTGITED 459

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTL 127
            L    +   +  EF  F   +    +AHNA FD GFI   +++    D   P   IDTL
Sbjct: 460 MLSGAGTIKQVLPEFTKF--AEGGILVAHNASFDYGFIRNSVKKYFGGDWEMPC--IDTL 515

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++A+  + +    L+++ KR    + H   H A  D+ + ++V  K +    +   
Sbjct: 516 ALAKSLYRAKSYSLDNVVKRLK--LGHFDHHRAYEDAKVTAEVLKKFLQQAKKRGV 569


>gi|309804220|ref|ZP_07698297.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
 gi|308163623|gb|EFO65893.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
          Length = 762

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + 
Sbjct: 400 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 457

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +   
Sbjct: 458 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 514

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176
            ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++     
Sbjct: 515 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 572

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              + N G   +  +F +  K+  PN
Sbjct: 573 RFQEANLGKMNDYAKFGQVYKRAKPN 598


>gi|332306380|ref|YP_004434231.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173709|gb|AEE22963.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 788

 Score =  172 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 86/168 (51%), Gaps = 9/168 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +V D+ETTG      RI EIGAV++++    + ++   + P  R+      +L GI
Sbjct: 620 QQPYVVVDVETTGGCKPGHRITEIGAVKVINGRVVD-SWSSLINPE-RRVPHFITRLTGI 677

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +++ +++ P F  +  +   F   Q+  ++AHN  FD GF   E  R+ +    P   + 
Sbjct: 678 SNDMVEEAPLFCEVIDDLECFM--QDCIFVAHNVNFDYGFFKLEYARLERSFSMP--KLC 733

Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           T+   R+ +P S+   L +L K YG+++ +   H AL D+   +++ I
Sbjct: 734 TVREMRKYYPGSKSYSLGNLTKEYGLSLDNH--HRALCDAQAAAELLI 779


>gi|227551758|ref|ZP_03981807.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|227179063|gb|EEI60035.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
          Length = 1450

 Score =  172 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N+   +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P G   S   + L 
Sbjct: 420 LNEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 477

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    R    P   + +
Sbjct: 478 GITDEMVRGSKSEEEVLRMFLEF--SKGTILVAHNAAFDMGFLNTSYARYGI-PEATNPV 534

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179
           IDTL +AR  +P   R  L  L K++G+++     H A+ D+      + +++K  +   
Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 592

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203
            + +  + NE     +  K     
Sbjct: 593 HMLYHDQLNEHIGEGDSYKRARPF 616


>gi|257887081|ref|ZP_05666734.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257895646|ref|ZP_05675299.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|293377743|ref|ZP_06623932.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium PC4.1]
 gi|257823135|gb|EEV50067.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257832211|gb|EEV58632.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|292643743|gb|EFF61864.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium PC4.1]
          Length = 1450

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N+   +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P G   S   + L 
Sbjct: 420 LNEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 477

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    R    P   + +
Sbjct: 478 GITDEMVRGSKSEEEVLRMFLEF--SKGTILVAHNAAFDMGFLNTSYARYGI-PEATNPV 534

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179
           IDTL +AR  +P   R  L  L K++G+++     H A+ D+      + +++K  +   
Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 592

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203
            + +  + NE     +  K     
Sbjct: 593 HMLYHDQLNEHIGEGDSYKRARPF 616


>gi|168334980|ref|ZP_02693097.1| DNA polymerase III, alpha subunit [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 1454

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 97/176 (55%), Gaps = 9/176 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   ++FD+ETTGL S +++IIEIGAV++ +    + TF  F+ P          +L GI
Sbjct: 433 EDEFVIFDLETTGLSSSSNKIIEIGAVKIRNGKIID-TFSSFVNPET-DIPEHITELTGI 490

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   + D P+ +++  +F +F     A  +AHNA FD+GFI    + +  +       ID
Sbjct: 491 TTTDIADAPTIAAVLPQFVEFCAS--AILVAHNADFDMGFILHNTRDLAIEF--NKTYID 546

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           T+S+AR   P+  N  L+++  +  +++  ++ H A+ D+   +++++K +   +Q
Sbjct: 547 TVSMARILLPNLGNAKLSNIANKLKVSL--KNHHRAVDDASATAEIFLKFIEMLAQ 600


>gi|23099048|ref|NP_692514.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus
           iheyensis HTE831]
 gi|32469727|sp|Q8EQU6|DPO3_OCEIH RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|22777276|dbj|BAC13549.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus
           iheyensis HTE831]
          Length = 1428

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 8/171 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +VFD+ETTGL +  D IIE+ AV++      +R F+ F  P+    S   + L GI
Sbjct: 411 EDTFVVFDVETTGLSAVYDTIIELAAVKIKGGEIVDR-FESFANPH-HALSQTTIDLTGI 468

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+ + D P  + +  +F  +    N   +AHNA FD+GF+N   QRI+ +    + ++D
Sbjct: 469 TDDMVNDAPEVADVLKDFHTWMG--NDILVAHNASFDMGFLNQGFQRIDYEKAS-NPVVD 525

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR   P  RN  LN+LCK   I ++    H A+ D+     +  K++
Sbjct: 526 TLELARFLLPELRNHRLNTLCKHLDIELTQH--HRAIYDAEATGYLLWKLV 574


>gi|187935470|ref|YP_001885466.1| DNA polymerase III PolC [Clostridium botulinum B str. Eklund 17B]
 gi|187723623|gb|ACD24844.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum B str. Eklund 17B]
          Length = 1452

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG    ND+IIEIGAV++      +  F  F+ P  R    +  +L  I + 
Sbjct: 439 FVVFDLETTGFSPVNDKIIEIGAVKIKSGEIIDE-FSCFVNPQ-RDIPYKITQLTSIDNN 496

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD     +I  +F +F   ++   +AHNA FD GFI    + +N     P  I+DT++
Sbjct: 497 MVKDADVIENILPKFMEFC--EDTVIVAHNAAFDTGFIKKNCRDLNIRFDIP--ILDTVT 552

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + R  +P   +  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 553 LCRFLYPELKKVKLNIVAKFLGISLENH--HRAVDDAKATADILLK 596


>gi|302386245|ref|YP_003822067.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
 gi|302196873|gb|ADL04444.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
          Length = 1516

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 11/183 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG  S  +RIIEIGAV++ + +  ++ F  F+ P+      E  KL GI D 
Sbjct: 492 YVVFDIETTGFSSSRNRIIEIGAVKVENGTIADK-FSTFVNPD-VPIPFEIEKLTGINDN 549

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  + I   F +F    N+  +AHNA FDV FI     R+N        +IDT++
Sbjct: 550 MVLPYPKINEILPRFLEFCG--NSVLVAHNAAFDVSFIAYNAARLNLAFEPT--VIDTVA 605

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR   P+  R  L+++ K   +++ +   H A+ D+   +++++  +    +   G +T
Sbjct: 606 LARLLLPNLNRYKLDTVAKALVVSLENH--HRAVDDAGCTAEIFVAFVKMLRER--GVET 661

Query: 188 NED 190
            ++
Sbjct: 662 LDE 664


>gi|309805552|ref|ZP_07699597.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165203|gb|EFO67441.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
          Length = 758

 Score =  172 bits (436), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ D    +R F  F+ P+    S   + 
Sbjct: 396 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 453

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +++    + +  +F +F+  Q+     HN +FD+GF+NA L+R N D +   
Sbjct: 454 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 510

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176
            ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++     
Sbjct: 511 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 568

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              + N G   +  +F +  K+  PN
Sbjct: 569 RFQEANLGKMNDYAKFGQVYKRAKPN 594


>gi|349620|gb|AAA17435.1| DNA polymerase III epsilon subunit [Buchnera aphidicola]
          Length = 179

 Score =  172 bits (436), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 84/179 (46%), Positives = 112/179 (62%), Gaps = 11/179 (6%)

Query: 5   NKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           N  R IV D ETTG++S      N RIIEIGA+E+++   T + F  ++ PN R    +A
Sbjct: 3   NTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN-RLIESDA 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---D 116
            K+HGITD+FL DKPSF  I  +F+++   +N+E I HNA FDVGFIN E   + K   D
Sbjct: 62  SKIHGITDDFLSDKPSFKDIAKDFFNYI--KNSELIIHNASFDVGFINQEFSMLTKKIQD 119

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +   IIDTL IAR+  P  +N L++LC RY I  SHR  HGA+LD+ LL  +Y+ M 
Sbjct: 120 ISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGKLYLLMT 178


>gi|332559019|ref|ZP_08413341.1| putative exonuclease [Rhodobacter sphaeroides WS8N]
 gi|332276731|gb|EGJ22046.1| putative exonuclease [Rhodobacter sphaeroides WS8N]
          Length = 695

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61
           R   +  +VFD ETTGL    D I++I AV +++  +         + P+ R   P + +
Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPH-RPIPPSSTE 548

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGITD  + + P    +   F  F   + A  +AHNA FD+ F+      I +   +P 
Sbjct: 549 VHGITDAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNAPFDMEFLRRAEPLIGRRFDNP- 605

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            I+DT+ ++      S  + L++L  R GITI   ++H A+ D+   +D ++K++
Sbjct: 606 -ILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVATADAFLKLL 659


>gi|293402030|ref|ZP_06646169.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304422|gb|EFE45672.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 1443

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 5/180 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
               K    VFD+ETTGL S+ D IIE G   + D +   ++ Q+F+ P     S    +
Sbjct: 389 TELEKGTYCVFDLETTGLSSRFDHIIEFGGQIMKDRTCI-KSLQLFVKPPIA-LSAFTTE 446

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  I++E +K+   F+    E  +F    ++  +AHNA FD GF+NAEL+RI + PL  +
Sbjct: 447 LTNISEENMKNAKPFAECVDEILEFIG--DSILVAHNASFDYGFLNAELERIGRKPL-MN 503

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +IDTL +AR         L +L ++YGI       H A  D+ +L+ V++ M+     I
Sbjct: 504 PVIDTLDLARSMMDRKGYRLGNLARQYGIRYDEDVAHRADYDAEVLAQVFMHMLNDLKHI 563


>gi|182417583|ref|ZP_02948906.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237668138|ref|ZP_04528122.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378596|gb|EDT76124.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237656486|gb|EEP54042.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 1450

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG    ND+IIEIGAV++ +    +  F  F+ P  R       +L  I ++
Sbjct: 437 YVVFDIETTGFSPVNDKIIEIGAVKIKNGEVIDN-FSHFVNPE-RSIPYVITELTSINND 494

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D  +   +  +F +F    ++  +AHNA FD GFI    + +  D      I+DT+ 
Sbjct: 495 MVRDAETIEILLPKFMEFCA--DSVLVAHNAAFDTGFIKKNCRDLGIDF--NYSIMDTVP 550

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +AR   P   +  LN + K  GI++ +   H A+ D+   +++ +K 
Sbjct: 551 LARFLCPDLKKVKLNLVAKHLGISLDNH--HRAVDDAKCTAEILLKF 595


>gi|251779220|ref|ZP_04822140.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243083535|gb|EES49425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 1452

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG    ND+IIEIGAV++      ++ F  F+ P  R    +  +L  I + 
Sbjct: 439 FVVFDLETTGFSPINDKIIEIGAVKIKSGEIIDK-FSCFVNPK-RDIPYKITQLTSIDNN 496

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD     +I  +F +F   +    +AHNA FD GFI    + +N +   P  I+DT++
Sbjct: 497 MVKDADVIENILPKFMEFC--EGTVVVAHNAAFDTGFIKKNCRDLNINFDLP--ILDTVT 552

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + R  +P   +  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 553 LCRFLYPELKKVKLNIVAKFLGISLENH--HRAVDDAKATADILLK 596


>gi|254463814|ref|ZP_05077225.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacterales bacterium Y4I]
 gi|206684722|gb|EDZ45204.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacterales bacterium Y4I]
          Length = 469

 Score =  171 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 7/184 (3%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61
           + + +  +VFD ETTGL    D I++IGA+ ++         F   + P G      + K
Sbjct: 271 KLSNLSYVVFDTETTGLLPHKDEIVQIGALRVVRNRIVAGEQFGTLVDP-GTPIPAASTK 329

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI+D  ++  P        F  F    +A  +AHNA FD+ F+    +R       P 
Sbjct: 330 VHGISDAMVQGAPDIGQAARAFHRF--ASDAVIVAHNAPFDMAFLRRHAKRAGVSWDQP- 386

Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DT+ ++      S  + L++LC+R  +TI    +H A+ D+   ++V+ KM+     
Sbjct: 387 -VLDTVLLSAVLFGASQSHTLDALCERLEVTIPPALRHTAMGDAQATAEVFCKMLPMLEA 445

Query: 181 INFG 184
              G
Sbjct: 446 RGLG 449


>gi|188589600|ref|YP_001920613.1| DNA polymerase III PolC [Clostridium botulinum E3 str. Alaska E43]
 gi|188499881|gb|ACD53017.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 1452

 Score =  171 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG    ND+IIEIGAV++      ++ F  F+ P  R    +  +L  I + 
Sbjct: 439 FVVFDLETTGFSPINDKIIEIGAVKIKSGEIIDK-FSCFVNPK-RDIPYKITQLTSIDNN 496

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD     +I  +F +F   +    +AHNA FD GFI    + +N +   P  I+DT++
Sbjct: 497 MVKDADVIENILPKFMEFC--EGTVVVAHNAAFDTGFIKKNCRDLNINFDLP--ILDTVT 552

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + R  +P   +  LN + K  GI++ +   H A+ D+   +D+ +K
Sbjct: 553 LCRFLYPELKKVKLNIVAKFLGISLENH--HRAVDDAKATADILLK 596


>gi|77464143|ref|YP_353647.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1]
 gi|77388561|gb|ABA79746.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1]
          Length = 695

 Score =  171 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61
           R   +  +VFD ETTGL    D I++I AV +++  +         + P+ R   P + +
Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPH-RPIPPSSTE 548

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGITD  + + P    +   F  F   + A  +AHNA FD+ F+      I +   +P 
Sbjct: 549 VHGITDAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNAPFDMEFLRRAEPLIGRRFDNP- 605

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            I+DT+ ++      S  + L++L  R GITI   ++H A+ D+   +D ++K++
Sbjct: 606 -ILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVATADAFLKLL 659


>gi|119387281|ref|YP_918315.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119377856|gb|ABL72619.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 659

 Score =  171 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 97/208 (46%), Gaps = 9/208 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R   +  +VFD ETTGLD   DRI++I  + +     T   F   + P GR   P +  +
Sbjct: 447 RLADLTCVVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDP-GRPIPPASTAV 505

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGITD  +   P  ++  + F  F   ++   +AHNA FD+GF+   +          ++
Sbjct: 506 HGITDAMVAGAPDMTAALTAFHHF--AEDTVLVAHNAPFDMGFLRRAVPETGAHF--DNQ 561

Query: 123 IIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++DT L  A     S+ + L++L +R GI I   ++H A+ D+   ++ Y++++      
Sbjct: 562 VLDTVLLSAMLWGQSAPHSLDALTERLGIVIPPEARHTAMGDARATAEAYLRLIAALE-- 619

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD 209
             G    ED    E ++    +    + 
Sbjct: 620 AKGLDRFED-VLAEARRHRRLVDDANKP 646


>gi|282850817|ref|ZP_06260191.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 224-1]
 gi|282557769|gb|EFB63357.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 224-1]
          Length = 1389

 Score =  171 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 12/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ +  +    F  F+ P+    S   + 
Sbjct: 365 MDYRDREYVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDEFINPH-HPLSDTTIN 422

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +        +  +F DF+ ++      HN +FDVGF+NA L+R   D +   
Sbjct: 423 LTSITDEMVGAADDEKDVIKKFKDFYGDR--PLCGHNVQFDVGFVNAALRRAGLDEIS-Q 479

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176
            ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++     
Sbjct: 480 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFNA 537

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              + + G   +  ++ +  K+  P+
Sbjct: 538 RFHEADLGKMNDYAKYGQVYKRAKPS 563


>gi|229918664|ref|YP_002887310.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b]
 gi|229470093|gb|ACQ71865.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b]
          Length = 1430

 Score =  171 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 98/174 (56%), Gaps = 8/174 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  ++IIE+  V++ D    +R F+ F  P     S   ++L GITD+
Sbjct: 410 YVVFDVETTGLSAVYNKIIELAGVKIKDGEIIDR-FEAFADPK-HALSATTIELTGITDD 467

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ +P    I   F D+    ++  +AHNA FD+GF+ A L+    +P D   +IDTL 
Sbjct: 468 MVQGQPDPEVITKRFVDWCG--DSILVAHNASFDMGFLEATLRSGGHEP-DDYPVIDTLE 524

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +AR   P+ +N  LN+L KR+ I ++    H A+ D+   + + +K++    Q+
Sbjct: 525 LARTLMPTLKNHRLNTLAKRFDIELTQH--HRAIYDAEATAYLLMKLLDLAKQM 576


>gi|257898236|ref|ZP_05677889.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
 gi|257836148|gb|EEV61222.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
          Length = 1450

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N+   +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P G   S   + L 
Sbjct: 420 LNEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 477

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    R    P   + +
Sbjct: 478 GITDEMVRGSKSEEEVLRMFLEF--SKGTILVAHNAAFDMGFLNTSYARYGI-PEAANPV 534

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179
           IDTL +AR  +P   R  L  L K++G+++     H A+ D+      + +++K  +   
Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 592

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203
            + +  + NE     +  K     
Sbjct: 593 HMLYHDQLNEHIGEGDSYKRARPF 616


>gi|293570615|ref|ZP_06681666.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E980]
 gi|291609286|gb|EFF38557.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E980]
          Length = 1450

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N+   +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P G   S   + L 
Sbjct: 420 LNEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 477

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    R    P   + +
Sbjct: 478 GITDEMVRGSKSEEEVLRMFLEF--SKGTILVAHNAAFDMGFLNTSYARYGI-PEAANPV 534

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179
           IDTL +AR  +P   R  L  L K++G+++     H A+ D+      + +++K  +   
Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 592

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203
            + +  + NE     +  K     
Sbjct: 593 HMLYHDQLNEHIGEGDSYKRARPF 616


>gi|238852616|ref|ZP_04643026.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 202-4]
 gi|238834762|gb|EEQ26989.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 202-4]
          Length = 1432

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 12/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ +  +    F  F+ P+    S   + 
Sbjct: 408 MDYRDREYVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDEFINPH-HPLSDTTIN 465

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +        +  +F DF+ ++      HN +FDVGF+NA L+R   D +   
Sbjct: 466 LTSITDEMVGAADDEKDVIKKFKDFYGDR--PLCGHNVQFDVGFVNAALRRAGLDEIS-Q 522

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176
            ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++     
Sbjct: 523 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFNA 580

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              + + G   +  ++ +  K+  P+
Sbjct: 581 RFHEADLGKMNDYAKYGQVYKRAKPS 606


>gi|116629466|ref|YP_814638.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           ATCC 33323]
 gi|116095048|gb|ABJ60200.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           gasseri ATCC 33323]
          Length = 1432

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 12/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ +  +    F  F+ P+    S   + 
Sbjct: 408 MDYRDREYVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDEFINPH-HPLSDTTIN 465

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +        +  +F DF+ ++      HN +FDVGF+NA L+R   D +   
Sbjct: 466 LTSITDEMVGAADDEKDVIKKFKDFYGDR--PLCGHNVQFDVGFVNAALRRAGLDEIS-Q 522

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176
            ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++     
Sbjct: 523 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFNA 580

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              + + G   +  ++ +  K+  P+
Sbjct: 581 RFHEADLGKMNDYAKYGQVYKRAKPS 606


>gi|222529790|ref|YP_002573672.1| DNA polymerase III subunit alpha [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456637|gb|ACM60899.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM
           6725]
          Length = 1402

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG DS+ DRIIEIGAV++ +   T R F  F+ P G K      +L GI  +
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITER-FSTFVDPEG-KIPVRISELTGIYQD 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  S    EF  F     +  +AHNA+FD+GF+    Q      +     IDTL 
Sbjct: 448 MVDKAPKLSDAILEFEKF--ASGSVLVAHNAQFDIGFLKKAYQECGI--IFDYTYIDTLE 503

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++RR     S + LN + +   I + H   H A  D+   + ++I ++       +
Sbjct: 504 LSRRLLTDLSSHKLNKVAEFLNIELKHH--HRADSDAETTAGIFISLVERLKARGY 557


>gi|300361904|ref|ZP_07058081.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03]
 gi|300354523|gb|EFJ70394.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03]
          Length = 1432

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 12/199 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +  +    F  F+ P+    S   + L  ITDE
Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDEFINPH-HPLSDTTINLTSITDE 472

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +        +  +F DF+ ++      HN +FDVGF+NA L+R   D +    ++DTL 
Sbjct: 473 MVGAADDEKDVIKKFKDFYGDR--PLCGHNVQFDVGFVNAALRRAGLDEIS-QPVVDTLE 529

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----VGGSQINF 183
           ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++        + + 
Sbjct: 530 VSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFNARFHEADL 587

Query: 184 GFKTNEDRFFKEEKKTVPN 202
           G   +  ++ +  K+  P+
Sbjct: 588 GKMNDYAKYGQVYKRAKPS 606


>gi|323466335|gb|ADX70022.1| DNA polymerase subunit III [Lactobacillus helveticus H10]
          Length = 1436

 Score =  171 bits (433), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 14/211 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S + + 
Sbjct: 412 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH-HPLSEQTIN 469

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +        +  +F DF+ ++      HN +FDVGF+NA L+R     +   
Sbjct: 470 LTSITDEMVSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEI-TQ 526

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DTL ++R  HP   R+ L+SL K+Y +++ H   H A  D+     +  K++     
Sbjct: 527 PVVDTLEVSRLLHPEQNRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMYKLLDA--- 581

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             F  K NED           +  + KR +P
Sbjct: 582 --FKKKYNEDN-LNNLNGYAAHGEVYKRARP 609


>gi|161507686|ref|YP_001577640.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348675|gb|ABX27349.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 1438

 Score =  171 bits (433), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 14/211 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S + + 
Sbjct: 414 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH-HPLSEQTIN 471

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +        +  +F DF+ ++      HN +FDVGF+NA L+R     +   
Sbjct: 472 LTSITDEMVSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEI-TQ 528

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DTL ++R  HP   R+ L+SL K+Y +++ H   H A  D+     +  K++     
Sbjct: 529 PVVDTLEVSRLLHPEQNRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMYKLLDA--- 583

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             F  K NED           +  + KR +P
Sbjct: 584 --FKKKYNEDN-LNNLNGYAAHGEVYKRARP 611


>gi|260906794|ref|ZP_05915116.1| hypothetical protein BlinB_15797 [Brevibacterium linens BL2]
          Length = 581

 Score =  171 bits (433), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 11/218 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              +++  ++ D+ETTG  +    I EIGAV+          FQ  + P     SP   +
Sbjct: 24  TPLHEVTFVIVDLETTGTTAGKSEITEIGAVKTRGGEVLGE-FQSLVKPEESVISPFVAR 82

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT   + D PS  S+   F +F     A  +AHNA FD+GFI +  ++++     P 
Sbjct: 83  LTGITHAMVDDAPSIRSVLPSFLEFC--VGAVLVAHNAPFDIGFIRSACEKLDYHWPQP- 139

Query: 122 RIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            ++DT++++RR   +     + L++L   +G  +S    H AL D+    +V  +++   
Sbjct: 140 TVLDTVTLSRRVVSRDEVRNHKLSTLAAHFGTEVS--PDHRALSDAKATGEVLHRVLERF 197

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
               +G  T E+     +       +     K +    
Sbjct: 198 G--GYGITTLEELATVRQAGWAKRQAKSHLAKGVPAEP 233


>gi|260101367|ref|ZP_05751604.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075]
 gi|260084819|gb|EEW68939.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075]
          Length = 1436

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 14/211 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S + + 
Sbjct: 412 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH-HPLSEQTIN 469

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +        +  +F DF+ ++      HN +FDVGF+NA L+R     +   
Sbjct: 470 LTSITDEMVSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEI-TQ 526

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DTL ++R  HP   R+ L+SL K+Y +++ H   H A  D+     +  K++     
Sbjct: 527 PVVDTLEVSRLLHPEQNRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMYKLLDA--- 581

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             F  K NED           +  + KR +P
Sbjct: 582 --FKKKYNEDN-LNNLNGYAAHGEVYKRARP 609


>gi|109898663|ref|YP_661918.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
           T6c]
 gi|109700944|gb|ABG40864.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
           T6c]
          Length = 769

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 9/168 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +V D+ETTG      RI EIGAV+++D SK   ++   + P  R+      +L GI
Sbjct: 601 QQPYVVVDVETTGGCKPGHRITEIGAVKVID-SKVVDSWSSLINPE-RRVPHFITRLTGI 658

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +++ ++D P F  +  +   F   Q+  ++AHN  FD GF   E  R+ +    P   + 
Sbjct: 659 SNDMVEDAPLFCEVIDDLEAFM--QDCIFVAHNVNFDYGFFKLEYGRLERAFSMP--KLC 714

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           T+   R+ +P      L  L K YG+++ +   H AL D+   +++ I
Sbjct: 715 TVREMRKYYPGSPSYSLGKLSKEYGLSLDNH--HRALCDAQAAAELLI 760


>gi|172057851|ref|YP_001814311.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
           255-15]
 gi|171990372|gb|ACB61294.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
           255-15]
          Length = 1431

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/180 (33%), Positives = 96/180 (53%), Gaps = 8/180 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
              K   +VFD+ETTGL +  ++IIE+ AV++ D    ++ F+ F  P     S   + L
Sbjct: 408 ELEKATFVVFDVETTGLSAMYNKIIELAAVKIYDGDVIDK-FEAFADPK-HLLSATTIDL 465

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GITDE ++ KP    +  EF D+     +  +AHNA FD+GF+NA L R          
Sbjct: 466 TGITDEMVRGKPDPEQVVKEFMDWAG--GSILVAHNASFDIGFLNATL-RSGNHEESTLP 522

Query: 123 IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +IDTL +AR   PS +N  LN+L KR+ I ++    H A+ D+     + +K++    ++
Sbjct: 523 VIDTLELARVLMPSLKNHRLNTLAKRFDIELTQH--HRAIYDAEATGYLMLKLLQMADEM 580


>gi|225018411|ref|ZP_03707603.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum
           DSM 5476]
 gi|224948829|gb|EEG30038.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum
           DSM 5476]
          Length = 1453

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD ETTGL+++ +R+ EIGAV L +   T   +  F+ P  +   P+  +L GITD 
Sbjct: 434 FVVFDTETTGLNAQTERLTEIGAVVLKNGEIT-EEYDEFVNPE-KPIPPKITELTGITDS 491

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+       F+ F   +    IAHNA FD+GF+ A   R           IDTL 
Sbjct: 492 MVADAPTEKEALERFFAF--AKGRILIAHNANFDMGFLAAAAARHGLS--CDFTYIDTLP 547

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           I R   P+ R + L+++ K     +   + H A  D+ +L  V+ +
Sbjct: 548 IVRTLFPTLRNHKLDTVVKHLK--LGDFNHHRACDDAKILGLVFAE 591


>gi|42519364|ref|NP_965294.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
 gi|41583652|gb|AAS09260.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
          Length = 1432

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 13/207 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  +N+   ++FD+ETTGL S  D IIEIGAV++ +  +    F  F+ P+    S   +
Sbjct: 408 MDYRNR-EYVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDEFINPH-HPLSDTTI 464

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L  ITDE +        +  +F +F+ ++      HN +FDVGF+NA L+R   + +  
Sbjct: 465 NLTSITDEMVGAADDEKDVIKKFKEFYGDR--PLCGHNVQFDVGFVNAALRRAGLEEI-T 521

Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM---- 175
             ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++    
Sbjct: 522 QPVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFN 579

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPN 202
               + + G   +  ++ +  K+  P+
Sbjct: 580 ERFHEADLGKMNDYAKYGQVYKRAKPS 606


>gi|157961820|ref|YP_001501854.1| DNA polymerase III subunit epsilon [Shewanella pealeana ATCC
           700345]
 gi|157846820|gb|ABV87319.1| DNA polymerase III, epsilon subunit [Shewanella pealeana ATCC
           700345]
          Length = 215

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 89/173 (51%), Gaps = 9/173 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL   + DR IEIGAV L D    +R FQ  + P G + S       GI++ 
Sbjct: 19  IVLDFETTGLSPTQGDRAIEIGAVMLKDGKVVDR-FQQLMNP-GFRISGFIESYTGISNA 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D PS   + ++F DF  + N   +AHNA FD  F++AEL+RIN   L   +   ++ 
Sbjct: 77  MLADAPSCEEVMAQFADFIGDYN--LVAHNASFDQRFLDAELKRINCHYL--GQFACSML 132

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           IARR +  +  + L SL     I       H AL DS + + +++ M+    Q
Sbjct: 133 IARRLYQAAPNHKLGSLVSYKNIQ-HDGVFHRALADSEMTASLWLAMLEDLQQ 184


>gi|227872422|ref|ZP_03990766.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
 gi|227841719|gb|EEJ52005.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
          Length = 821

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 11/182 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG D + + IIEIGAV++ +    +R   VF+ P G        +L  I D  
Sbjct: 519 VVFDLETTGFDPRVNHIIEIGAVKIENGKIIDR-MDVFVNP-GVPIPFRITQLTSIDDSM 576

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D      +  +F DF   ++A  +AHNA FD  F++ + + +N     P  +IDT+++
Sbjct: 577 VMDAKGIEEVLPQFLDF--AKDAILVAHNADFDYHFVSTKAKALNIPFSAP--VIDTVAL 632

Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +R   P   R  L+++ K   I + H   H A+ D+   + +Y+K +    Q   G  + 
Sbjct: 633 SRLLLPRLNRFKLDTVAKELKIELLHH--HRAVDDAEATARIYLKELEILEQR--GVSSL 688

Query: 189 ED 190
           E+
Sbjct: 689 EE 690


>gi|226356768|ref|YP_002786508.1| DNA polymerase III subunit epsilon [Deinococcus deserti VCD115]
 gi|226318758|gb|ACO46754.1| putative DNA-directed DNA polymerase (DNA polymerase III, epsilon
           subunit) [Deinococcus deserti VCD115]
          Length = 202

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 89/177 (50%), Gaps = 10/177 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCP-----NGRKNSPEAL 60
           M  +VFD+ETTGL  + D I+EIGA+ +++        ++  + P             A 
Sbjct: 1   MNVVVFDLETTGLSPERDGIVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPWHAQ 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGI++E ++  P+   +  EF +F    ++  +AHN  FD GF+ A+ +R+       
Sbjct: 61  RVHGISNEMVRSAPTIEEVLPEFLEFVG--DSAVVAHNVGFDCGFMRAQARRLGMVWAPA 118

Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                T+ ++RR  P  R ++L  L +R G+  +   +H +  D  + +  Y++++ 
Sbjct: 119 GEH-CTVQLSRRAFPKERAHNLTVLAERLGLNFAPGGRHRSFGDVQVTAHAYVRLLE 174


>gi|288959104|ref|YP_003449445.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum
           sp. B510]
 gi|288911412|dbj|BAI72901.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum
           sp. B510]
          Length = 702

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 97/194 (50%), Gaps = 12/194 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59
              +++  +VFD ETTGL     D I++I AV ++     T  TF + + P  R   PE+
Sbjct: 502 TPLDRLHYVVFDTETTGLSPSAGDEIVQIAAVRIVGGRILTGETFNMLVDPK-RPIPPES 560

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +  HGITD  +  KP+  ++  +F  F +   A  +AHNA FD+ F+  + +        
Sbjct: 561 IPFHGITDAMVAGKPTIDTVLPQFRSFVS--GAVLVAHNAAFDLKFLKMKERAAGVTF-- 616

Query: 120 PSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              ++DT+ ++R        + L+ + +R GI +  R  H AL DS + + V+++M+   
Sbjct: 617 DCPVLDTMLLSRMLLGNDGDHTLDGIAQRLGIAVVDR--HTALGDSLVTAAVFLRMIEML 674

Query: 179 SQINFGFKTNEDRF 192
              + G +T +D  
Sbjct: 675 R--DQGVRTLDDAI 686


>gi|227890229|ref|ZP_04008034.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849231|gb|EEJ59317.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 1432

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 12/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ +  +    F  F+ P+    S   + 
Sbjct: 408 MDYRDREYVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDEFINPH-HPLSDTTIN 465

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +        +  +F +F+ ++      HN +FDVGF+NA L+R   + +   
Sbjct: 466 LTSITDEMVGAADDEKDVIKKFKEFYGDR--PLCGHNVQFDVGFVNAALRRAGLEEI-TQ 522

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176
            ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++     
Sbjct: 523 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFNE 580

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              + + G   +  ++ +  K+  P+
Sbjct: 581 RFHEADLGKMNDYAKYGQVYKRAKPS 606


>gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1]
 gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum
           Rt17-B1]
          Length = 1390

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 92/178 (51%), Gaps = 11/178 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +    +V D+ETTGL+ ++D I+EIGAV+  D    +  F  F+ PN  K + ++L + G
Sbjct: 379 DDYTYVVLDLETTGLNPRSDEIMEIGAVKTRDGKVIDE-FHTFVRPN--KLNKKSLNITG 435

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT++ LKD P    +  +  +F   +++  +AHNA FD+ F+   L +   +   P   I
Sbjct: 436 ITEDMLKDAPDIMQVLPKLLEFI--KDSILVAHNADFDMTFLKNILSKSGIEFNPP--YI 491

Query: 125 DTLSIARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           DTL +++    +      L+ L   +G  +     H AL D+ +  +V+ K++    +
Sbjct: 492 DTLRLSQALLRNKIKSFSLDKLVDHFG--LGAFQHHRALDDARVTVNVFWKLIELAKK 547


>gi|223984468|ref|ZP_03634601.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
           12042]
 gi|223963539|gb|EEF67918.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
           12042]
          Length = 1451

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 6/168 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V+D+ETTGL    D IIE GAV +++  +   T Q+F+ P     +    +   IT+E
Sbjct: 399 YVVYDLETTGLSCSFDHIIEFGAV-VIERGEIKETKQLFVKPP-VPINAFISEKTNITNE 456

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     F+ +  E  DF  ++    +AHNA FD  F+N EL+RI   PL  + ++DTL 
Sbjct: 457 DVAQAKPFAEVAQELVDFIGDK--VLVAHNATFDYNFLNEELKRIGMAPL-TNPVVDTLD 513

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR  H   R   L ++ + Y IT      H A  D+ +L+ V++ M+
Sbjct: 514 LARALHSDRRSYRLGNIARHYRITYDEEVAHRADYDADVLASVFMLMI 561


>gi|253795564|ref|YP_003038660.1| putative DNA polymerase III, epsilon subunit [Candidatus Hodgkinia
           cicadicola Dsem]
 gi|253739872|gb|ACT34207.1| putative DNA polymerase III, epsilon subunit [Candidatus Hodgkinia
           cicadicola Dsem]
          Length = 182

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 101/170 (59%), Gaps = 3/170 (1%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K+R+I+ D ETTGL  K DR+IE+ A++L D  +T  T+  +  P   K S  A  +HGI
Sbjct: 5   KIREIILDTETTGLSVKTDRLIELAAIKLEDGRRTPHTYHSYFNPQPVKVSRSAFNVHGI 64

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++EFL DKP+F S   EF +F      E IAHNA+FD+  IN ELQ    DP+D     D
Sbjct: 65  SNEFLSDKPAFKSCAREFLEFVA--GHELIAHNARFDLQIINRELQMAGADPIDAGCWRD 122

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +LSIA++  P+  N + +LCKR+ +     + H A  D  LL+ VY  ++
Sbjct: 123 SLSIAKQLFPNRSNSMAALCKRFNLECETET-HSAARDCELLARVYELIL 171


>gi|227892603|ref|ZP_04010408.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
 gi|227865588|gb|EEJ73009.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
          Length = 1435

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 14/211 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ +  +    F  F+ P+    S + + 
Sbjct: 411 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDKFINPH-HPLSEQTIN 468

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +      + +  +F DF+ ++      HN +FDVGF+NA L+R     +   
Sbjct: 469 LTSITDEMVSAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEI-TQ 525

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DTL ++R  HP   R+ L+SL K+Y +++ H   H A  D+     +  K++     
Sbjct: 526 PVVDTLEVSRLLHPEQNRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMYKLLDA--- 580

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             F  K NED           +  + KR +P
Sbjct: 581 --FKKKYNEDN-LNNLNGYAAHGEVYKRARP 608


>gi|229155207|ref|ZP_04283319.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           4342]
 gi|228628334|gb|EEK85049.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           4342]
          Length = 934

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L KR+   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKRH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|182419729|ref|ZP_02950970.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237665534|ref|ZP_04525522.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376466|gb|EDT74047.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237658481|gb|EEP56033.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 1472

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG   K ++I EIG +++ D    ++ F  F+ P  +   P  +++  ITD+
Sbjct: 446 YCVLDLETTGFSPKLEKITEIGIMKVKDGKVIDK-FSTFVNPE-KPIPPRVVEVTNITDD 503

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++  +   +F +  +F   + +  +AHNA+FD+GF+    + +  D       +DTLS
Sbjct: 504 MVRNAETIDKVFPKMLEFI--EGSILVAHNAEFDIGFLRHYAKVLGHDF--DFTYLDTLS 559

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+   P  +   L  + K  GI +     H AL D      V+  M+
Sbjct: 560 LAQDLFPQYKSYKLGRIAKNLGIKVE--VAHRALDDVDTTVKVFNVMI 605


>gi|261251946|ref|ZP_05944520.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
 gi|260938819|gb|EEX94807.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
          Length = 204

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 89/186 (47%), Gaps = 11/186 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   N    IV D ETTGL     DR IEIGAV+L+D    + TFQ  + P G + S   
Sbjct: 1   MAAANS--VIVLDFETTGLSPNMGDRAIEIGAVKLIDGQVVD-TFQQLMNP-GFRVSSFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+  L   PS + + S+F DF    N   +AHNA FD  F++AE +RIN++   
Sbjct: 57  EGYTGITNNMLAGAPSCAEVMSDFNDFIGNDN--LVAHNASFDKRFLDAEFERINRN--Y 112

Query: 120 PSRIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 +L ++RR    +  + L  L +   I       H AL DS + + +++ M+   
Sbjct: 113 RGEFACSLLVSRRLNQEAPSHKLGDLVRYMNIDNDG-VFHRALADSQMTAKLWLLMLEDM 171

Query: 179 SQINFG 184
            Q    
Sbjct: 172 QQQGIH 177


>gi|221640011|ref|YP_002526273.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131]
 gi|221160792|gb|ACM01772.1| DNA polymerase III, epsilon subunit precursor [Rhodobacter
           sphaeroides KD131]
          Length = 695

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61
           R   +  +VFD ETTGL    D I++I AV +++  +         + P+ R   P + +
Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPH-RSIPPSSTE 548

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGITD  + + P    +   F  F   + A  +AHNA FD+ F+      I +   +P 
Sbjct: 549 VHGITDAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNAPFDMEFLRRAEPLIGRRFDNP- 605

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            I+DT+ ++      S  + L++L  R GITI   ++H A+ D+   +D ++K++
Sbjct: 606 -ILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVATADAFLKLL 659


>gi|257894713|ref|ZP_05674366.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
 gi|257831092|gb|EEV57699.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
          Length = 1450

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 11/204 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P G   S   + L 
Sbjct: 420 LSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 477

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITDE ++   S   +   F +F   ++   +AHNA FD+GF+N    R    P   + +
Sbjct: 478 GITDEMVRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPV 534

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179
           IDTL +AR  +P   R  L  L K++G+++     H A+ D+      + +++K  +   
Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 592

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203
            + +  + NE     +  K     
Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPF 616


>gi|227890631|ref|ZP_04008436.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
 gi|227867569|gb|EEJ74990.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
          Length = 1451

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 8/189 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD ETTGL ++ D++IE+ AV++   +  + TF+ F+ P G   S   + L  ITD+
Sbjct: 433 YVIFDTETTGLSAQYDKVIELAAVKMEKGNVID-TFEEFIDP-GHPLSQTTINLTSITDD 490

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   S   +F  F +F   ++   + HNA FDV F+N   +R N + +     IDTL 
Sbjct: 491 MVRGSKSEEEVFRLFKEFC--KDCIIVGHNATFDVDFMNTGYERHNMEMI-QEPWIDTLP 547

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR  +P  +   LN+L K+  I + H   H A+ D+     +Y  M+    +    +  
Sbjct: 548 LARYLYPEMKGFRLNTLAKKLNIKLEHH--HRAIYDAEATGFIYYAMLKDAEEKQILYHD 605

Query: 188 NEDRFFKEE 196
           + ++   E 
Sbjct: 606 DFNKHVGEN 614


>gi|268319259|ref|YP_003292915.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785]
 gi|262397634|emb|CAX66648.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785]
          Length = 1432

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 12/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ +  +    F  F+ P+    S   + 
Sbjct: 408 MDYRDREYVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDEFINPH-HPLSDTTIN 465

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +        +  +F +F+ ++      HN +FDVGF+NA L+R   + +   
Sbjct: 466 LTSITDEMVGAADDEKDVIKKFKEFYGDR--PLCGHNVQFDVGFVNAALRRAGLEEI-TQ 522

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176
            ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++     
Sbjct: 523 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFNE 580

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202
              + + G   +  ++ +  K+  P+
Sbjct: 581 RFHEADLGKMNDYAKYGQVYKRAKPS 606


>gi|104161981|emb|CAJ75690.1| DNA polymerase III, alpha subunit [uncultured Thermotogales
           bacterium]
          Length = 1428

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL+ K D IIEIGA++ +  S+   T+  F+ P  ++ S     L GIT++
Sbjct: 418 FLVFDLETTGLNPKEDEIIEIGAIK-MKGSEVLGTYSTFVKPE-KELSAMITSLTGITED 475

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTL 127
            L +      +  EF  F   +    +AHNA FD GF+   +++    D   P   IDTL
Sbjct: 476 MLSEARPIKEVLPEFTKF--TEGCILVAHNASFDYGFVRNSVKKHFGGDWEMPC--IDTL 531

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++A+    S    L+++ KR    + H   H A  D+ + ++V  K +
Sbjct: 532 ALAKSLFRSKSYSLDNVVKRLK--LGHFDHHRAFEDAKVTAEVLKKFV 577


>gi|257884340|ref|ZP_05663993.1| DNA polymerase III [Enterococcus faecium 1,231,501]
 gi|257820178|gb|EEV47326.1| DNA polymerase III [Enterococcus faecium 1,231,501]
          Length = 1450

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 11/204 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P G   S   + L 
Sbjct: 420 LSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 477

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITDE ++   S   +   F +F   ++   +AHNA FD+GF+N    R    P   + +
Sbjct: 478 GITDEMVRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPV 534

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179
           IDTL +AR  +P   R  L  L K++G+++     H A+ D+      + +++K  +   
Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 592

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203
            + +  + NE     +  K     
Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPF 616


>gi|15643342|ref|NP_228386.1| DNA polymerase III PolC [Thermotoga maritima MSB8]
 gi|6225287|sp|Q9ZHF6|DPO3_THEMA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|4981093|gb|AAD35661.1|AE001732_6 DNA polymerase III, alpha subunit [Thermotoga maritima MSB8]
 gi|3930535|gb|AAC80438.1| DNA polymerase III [Thermotoga maritima]
          Length = 1367

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 94/177 (53%), Gaps = 11/177 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGLD + D IIEIGAV+ +   +    +   + P+ R+ S ++ ++ GIT E
Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVK-IQGGQIVDEYHTLIKPS-REISRKSSEITGITQE 415

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127
            L++K S   +  EF  F   +++  +AHNA FD  F+   +++ +  D   P   IDTL
Sbjct: 416 MLENKRSIEEVLPEFLGFL--EDSIIVAHNANFDYRFLRLWIKKVMGLDWERP--YIDTL 471

Query: 128 SIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++A+         L+S+ ++ G+    H   H AL D+ + + V+++ +    +I  
Sbjct: 472 ALAKSLLKLRSYSLDSVVEKLGLGPFRH---HRALDDARVTAQVFLRFVEMMKKIGI 525


>gi|257878528|ref|ZP_05658181.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|293567721|ref|ZP_06679063.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1071]
 gi|294618725|ref|ZP_06698257.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1679]
 gi|294620761|ref|ZP_06699968.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium U0317]
 gi|257812756|gb|EEV41514.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|291589564|gb|EFF21370.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1071]
 gi|291595038|gb|EFF26383.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1679]
 gi|291599741|gb|EFF30751.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium U0317]
          Length = 1450

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 11/204 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P G   S   + L 
Sbjct: 420 LSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 477

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITDE ++   S   +   F +F   ++   +AHNA FD+GF+N    R    P   + +
Sbjct: 478 GITDEMVRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPV 534

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179
           IDTL +AR  +P   R  L  L K++G+++     H A+ D+      + +++K  +   
Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 592

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203
            + +  + NE     +  K     
Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPF 616


>gi|293556647|ref|ZP_06675212.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
 gi|291601182|gb|EFF31469.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
          Length = 1450

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 11/204 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P G   S   + L 
Sbjct: 420 LSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 477

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITDE ++   S   +   F +F   ++   +AHNA FD+GF+N    R    P   + +
Sbjct: 478 GITDEMVRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPV 534

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179
           IDTL +AR  +P   R  L  L K++G+++     H A+ D+      + +++K  +   
Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 592

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203
            + +  + NE     +  K     
Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPF 616


>gi|294613939|ref|ZP_06693874.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
 gi|291593214|gb|EFF24788.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
          Length = 1450

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 11/204 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P G   S   + L 
Sbjct: 420 LSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 477

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITDE ++   S   +   F +F   ++   +AHNA FD+GF+N    R    P   + +
Sbjct: 478 GITDEMVRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPV 534

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179
           IDTL +AR  +P   R  L  L K++G+++     H A+ D+      + +++K  +   
Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 592

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203
            + +  + NE     +  K     
Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPF 616


>gi|302872252|ref|YP_003840888.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575111|gb|ADL42902.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 1402

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG DS+ DRIIEIGAV++ +   T R F  F+ P G K      +L GI  +
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITER-FSTFVDPEG-KIPVRISELTGIYQD 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  S    EF  F     +  +AHNA+FD+GF+    Q      +     IDTL 
Sbjct: 448 MVDKAPKLSDAILEFERF--ASGSVLVAHNAQFDIGFLKKAYQECGI--IFDYTYIDTLE 503

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++RR     S + LN + +   + + H   H A  D+   ++++I ++       +
Sbjct: 504 LSRRLLTDLSSHKLNKVAEFLNVELKHH--HRADSDAETTANIFISLVERLKARGY 557


>gi|218283081|ref|ZP_03489176.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
 gi|218216150|gb|EEC89688.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
          Length = 1446

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 108/244 (44%), Gaps = 21/244 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R      +VFD+ETTGL +  D IIE G V++ +  +  R  Q+F+ P  R        L
Sbjct: 391 RLEDATFVVFDLETTGLSNTRDEIIEFGGVKIKNREEVGR-LQMFINPK-RTIPAHISNL 448

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             IT   +           E  +F    ++  +AHNA FDVGF+NA  ++  +D L  + 
Sbjct: 449 THITQNDVDCAKPIEDALDELLEFIG--DSILVAHNATFDVGFMNAACRKTGRDEL-TNP 505

Query: 123 IIDTLSIARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +IDTL ++    P    R +L S+C+ Y ++      H A  D+ +LS V   MM   +Q
Sbjct: 506 VIDTLPLSYAMLPDEQKRFNLGSVCRHYRVSYDGEGAHRADYDADVLSQVMYNMM---NQ 562

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPL---FTRITKEELDE--------HDKTIQ 229
           +      +     +   +   +    +R++P         K+ L E        H + + 
Sbjct: 563 LGHDATLDTLMDMEGGCEKYSSKKPYERNRPYHMTVFAKNKDGLKELFELITLSHTQYLV 622

Query: 230 TLGK 233
           ++GK
Sbjct: 623 SMGK 626


>gi|300214373|gb|ADJ78789.1| DNA polymerase III polC-type (PolIII) [Lactobacillus salivarius
           CECT 5713]
          Length = 1444

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 8/189 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD ETTGL ++ D++IE+ AV++   +  + TF+ F+ P G   S   + L  ITD+
Sbjct: 426 YVIFDTETTGLSAQYDKVIELAAVKMEKGNVID-TFEEFIDP-GHPLSQTTINLTSITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   S   +F  F +F   ++   + HNA FDV F+N   +R N + +     IDTL 
Sbjct: 484 MVRGSKSEEEVFRLFKEFC--KDCIIVGHNATFDVDFMNTGYERHNMEMI-QEPWIDTLP 540

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR  +P  +   LN+L K+  I + H   H A+ D+     +Y  M+    +    +  
Sbjct: 541 LARYLYPEMKGFRLNTLAKKLNIKLEHH--HRAIYDAEATGFIYYAMLKDAEEKQILYHD 598

Query: 188 NEDRFFKEE 196
           + ++   E 
Sbjct: 599 DFNKHIGEN 607


>gi|315038577|ref|YP_004032145.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
 gi|312276710|gb|ADQ59350.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
          Length = 1435

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 14/211 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ +  +    F  F+ P+    S + + 
Sbjct: 411 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDKFINPH-HPLSEQTIN 468

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +        +  +F DF+ ++      HN +FDVGF+NA L+R     +   
Sbjct: 469 LTSITDEMVSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEI-TQ 525

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DTL ++R  HP   R+ L+SL K+Y +++ H   H A  D+     +  K++     
Sbjct: 526 PVVDTLEVSRLLHPEQNRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMYKLLDA--- 580

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             F  K NED           +  + KR +P
Sbjct: 581 --FKKKYNEDN-LNNLNGYAAHGEVYKRARP 608


>gi|310779125|ref|YP_003967458.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
 gi|309748448|gb|ADO83110.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
          Length = 1442

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 7/169 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V+D+ET GL+S  + IIEIGA++L      ++ +   + P G+    +  +L GITD+
Sbjct: 415 YVVYDLETMGLNSHENEIIEIGAIKLKGTRIVDK-YSQLINP-GKSIPSKIQELTGITDD 472

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD+PS   +   F +F    +A  +AHNA+FD+GF+  ++++          +IDTL 
Sbjct: 473 MVKDEPSIEEVLPGFLEFAG--DATLVAHNARFDIGFLTRDVKKYTNIKDYKPSVIDTLQ 530

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            AR   P  R   L S+ K+ G+ + +   H A+ DS   + ++   + 
Sbjct: 531 WARDLLPDLRGYGLKSVTKKLGVALENH--HRAVDDSQATAHMFAIFLE 577


>gi|262046916|ref|ZP_06019876.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
 gi|260572898|gb|EEX29458.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
          Length = 1436

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 97/176 (55%), Gaps = 9/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K++   ++FD+ETTGL S  D IIEIGAV++ +  +    F  F+ P+    S + +
Sbjct: 412 MTYKDR-EFVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDKFINPH-HPLSEQTI 468

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L  ITDE +      + +  +F DF+ ++      HN +FDVGF+NA L+R     +  
Sbjct: 469 NLTSITDEMVGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEI-T 525

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             ++DTL ++R  HP  SR+ L+SL K+Y +++ H   H A  D+     +  K++
Sbjct: 526 QPVVDTLEVSRLLHPEQSRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMFKLL 579


>gi|325957051|ref|YP_004292463.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC]
 gi|325333616|gb|ADZ07524.1| DNA polymerase III, alpha subunit [Lactobacillus acidophilus 30SC]
 gi|327183774|gb|AEA32221.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL
           1118]
          Length = 1435

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 14/211 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ +  +    F  F+ P+    S + + 
Sbjct: 411 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDKFINPH-HPLSEQTIN 468

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +        +  +F DF+ ++      HN +FDVGF+NA L+R     +   
Sbjct: 469 LTSITDEMVSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEI-TQ 525

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DTL ++R  HP   R+ L+SL K+Y +++ H   H A  D+     +  K++     
Sbjct: 526 PVVDTLEVSRLLHPEQNRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMYKLLDA--- 580

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             F  K NED           +  + KR +P
Sbjct: 581 --FKKKYNEDN-LNNLNGYAAHGEVYKRARP 608


>gi|226227286|ref|YP_002761392.1| DNA polymerase III epsilon subunit [Gemmatimonas aurantiaca T-27]
 gi|226090477|dbj|BAH38922.1| DNA polymerase III epsilon subunit [Gemmatimonas aurantiaca T-27]
          Length = 214

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 9/219 (4%)

Query: 6   KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +   V D+ETTG  +   DRI EI  V  +   +    +   + P  R   P    L  
Sbjct: 3   DLPFAVVDVETTGTRAAGGDRITEIAIV-QVQGGQVGEVYSQLVNPE-RPIPPYITSLTH 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT + ++D+P+F  I S   D    + + ++AHNA FD  F++ E++R +   L     +
Sbjct: 61  ITWDMVRDQPTFREITSNVLDRL--RGSIFVAHNAPFDWRFVSEEVRRGSGQELS-GPRL 117

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            T+  AR   P  SR  L+ + + +GI I+  ++H A  D+   +    +M+   S+   
Sbjct: 118 CTVRFARAALPQLSRRSLDHVTRYFGIEIA--ARHRAAGDALATAHALCRMLNIASEHGV 175

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
              T    F      T P  +  +R +     +TK+++ 
Sbjct: 176 ESWTALQAFVDGPVGTRPRTASDRRRRAFPLPVTKDDIA 214


>gi|301300283|ref|ZP_07206492.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852124|gb|EFK79799.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 1444

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 8/189 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD ETTGL ++ D++IE+ AV++   +  + TF+ F+ P G   S   + L  ITD+
Sbjct: 426 YVIFDTETTGLSAQYDKVIELAAVKMEKGNVID-TFEEFIDP-GHPLSQTTINLTSITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   S   +F  F +F   ++   + HNA FDV F+N   +R N + +     IDTL 
Sbjct: 484 MVRGSKSEEEVFRLFKEFC--KDCIIVGHNATFDVDFMNTGYERHNMEMI-QEPWIDTLP 540

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR  +P  +   LN+L K+  I + H   H A+ D+     +Y  M+    +    +  
Sbjct: 541 LARYLYPEMKGFRLNTLAKKLNIKLEHH--HRAIYDAEATGFIYYAMLKDAEEKQILYHD 598

Query: 188 NEDRFFKEE 196
           + ++   E 
Sbjct: 599 DFNKHVGEN 607


>gi|229090605|ref|ZP_04221839.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-42]
 gi|228692748|gb|EEL46473.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-42]
          Length = 934

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|90961543|ref|YP_535459.1| DNA polymerase III PolC [Lactobacillus salivarius UCC118]
 gi|122449173|sp|Q1WUF9|DPO3_LACS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|90820737|gb|ABD99376.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118]
          Length = 1444

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 8/189 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD ETTGL ++ D++IE+ AV++   +  + TF+ F+ P G   S   + L  ITD+
Sbjct: 426 YVIFDTETTGLSAQYDKVIELAAVKMEKGNVID-TFEEFIDP-GHPLSQTTINLTSITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   S   +F  F +F   ++   + HNA FDV F+N   +R N + +     IDTL 
Sbjct: 484 MVRGSKSEEEVFRLFKEFC--KDCIIVGHNATFDVDFMNTGYERHNMEMI-QEPWIDTLP 540

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR  +P  +   LN+L K+  I + H   H A+ D+     +Y  M+    +    +  
Sbjct: 541 LARYLYPEMKGFRLNTLAKKLNIKLEHH--HRAIYDAEATGFIYYAMLKDAEEKQILYHD 598

Query: 188 NEDRFFKEE 196
           + ++   E 
Sbjct: 599 DFNKHVGEN 607


>gi|312127164|ref|YP_003992038.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777183|gb|ADQ06669.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 1402

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG DS+ DRIIEIGAV++ +   T + F  F+ P G K      +L GI  +
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITEK-FSTFVDPEG-KIPVRISELTGIYQD 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  S    EF  F     +  +AHNA+FD+GF+    Q      +     IDTL 
Sbjct: 448 MVDKAPKLSDAILEFEKF--ASGSVLVAHNAQFDIGFLKKAYQECGI--IFDYTYIDTLE 503

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++RR     S + LN + +   + + H   H A  D+   + ++I ++       +
Sbjct: 504 LSRRLLTDLSSHKLNKVAEFLNVELKHH--HRADSDAETTAGIFISLVERLKARGY 557


>gi|114321202|ref|YP_742885.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227596|gb|ABI57395.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 714

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 95/200 (47%), Gaps = 11/200 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL 60
           R   +  +VFD E TGL+ +  D II I  V +++    T  TF   + P GR   P ++
Sbjct: 503 RLADLSFVVFDCEMTGLNPEGGDEIISIAGVRVVNGRVLTGETFDRIINP-GRPIPPGSV 561

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           + HGITD+ ++DKP    +  +F  F    +A  +AHNA FD+ FI+ + +       +P
Sbjct: 562 RFHGITDDDVQDKPPIEVVLPQFKSFVG--DAVLVAHNAAFDMKFISMKEREAGVRFDNP 619

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---MVG 177
                 LS          + L++LC RYGI I+ R  H AL D+   +++ +++   +  
Sbjct: 620 VLDTLLLSALLD-GDEEDHSLDALCDRYGIAITGR--HTALGDTLATAELLVRIIERLEA 676

Query: 178 GSQINFGFKTNEDRFFKEEK 197
                FG      R   E +
Sbjct: 677 QGYQTFGEVMKASRMAAELR 696


>gi|300117431|ref|ZP_07055221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus SJ1]
 gi|298725266|gb|EFI65918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus SJ1]
          Length = 934

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|196039095|ref|ZP_03106402.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus NVH0597-99]
 gi|196030240|gb|EDX68840.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus NVH0597-99]
          Length = 934

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 107/257 (41%), Gaps = 37/257 (14%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--------- 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +         
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFLNEIEKLPLV 176

Query: 176 ----------------VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITK 218
                                +N   K    +   EE +   NI+L KR+  L  + I  
Sbjct: 177 TLQSLYELSDVFQSDIADVLSVNILKKMMHGKKAAEEYEVYRNIALRKRNYSLNLSEICS 236

Query: 219 EELDEH-DKTIQTLGKN 234
            + D    KTI  L  N
Sbjct: 237 SKFDAFLHKTIDKLALN 253


>gi|237737108|ref|ZP_04567589.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC
           9817]
 gi|229420970|gb|EEO36017.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC
           9817]
          Length = 1450

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 8/169 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ET GL+S    IIEIGAV+L      +R F   + P  +    +  +L  IT E
Sbjct: 424 FIVFDLETMGLNSHEHEIIEIGAVKLRGNRIVDR-FSQLVNPQ-KPIPKKIQELTNITQE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P+   +  +F +F    +A  +AHNA FD+GFI  +++R+      P+ IIDTL 
Sbjct: 482 MVDNMPTIEEVLPKFMEFVG--DATMVAHNAAFDMGFIRRDVKRLLGYDYTPA-IIDTLQ 538

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +AR  +P  +   L +L K  G+++   S H A+ DS   ++++I  M 
Sbjct: 539 MARDLYPDLKGYGLKNLNKVLGLSLE--SHHRAVDDSQATANMFIIFME 585


>gi|126462986|ref|YP_001044100.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104650|gb|ABN77328.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 695

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61
           R   +  +VFD ETTGL    D I++I AV +++  +         + P+ R   P + +
Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPH-RPIPPSSTE 548

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGITD  + + P    +   F  F   + A  +AHNA FD+ F+      I +   +P 
Sbjct: 549 VHGITDAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNAPFDMEFLRRAEPLIGRRFDNP- 605

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            I+DT+ ++      S  + L++L  R GITI   ++H A+ D+   +D ++K++
Sbjct: 606 -ILDTVLLSAVLFGQSDVHSLDALTHRIGITIPEEARHTAIGDTVATADAFLKLL 659


>gi|144897909|emb|CAM74773.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 677

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 57/172 (33%), Positives = 96/172 (55%), Gaps = 10/172 (5%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61
              +  IVFD ETTGL   + D+I++IGAV +++       +F   + P GR   PE++K
Sbjct: 479 LRSLTFIVFDTETTGLQPSQGDQIVQIGAVRIVNGRILSGESFNRIVNP-GRVIPPESIK 537

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            HGITD+ +KDKP    +  +F  F    +A  +AHNA FD+ F+    ++      +P 
Sbjct: 538 FHGITDDMVKDKPPLGVVLPQFKAF--AADAVLVAHNAAFDLKFLRMNERQFGLKFDNP- 594

Query: 122 RIIDTLSIA-RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            ++DT+ ++     P + + L+++C R GI+I+ R  H AL D+ + + V +
Sbjct: 595 -VLDTMMLSNYLDGPETGHSLDAICDRLGISITDR--HTALGDAIVTAAVLL 643


>gi|118477094|ref|YP_894245.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus thuringiensis str. Al Hakam]
 gi|196046614|ref|ZP_03113838.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB108]
 gi|225863505|ref|YP_002748883.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB102]
 gi|229183836|ref|ZP_04311053.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC
           6E1]
 gi|118416319|gb|ABK84738.1| ATP-dependent DNA helicase [Bacillus thuringiensis str. Al Hakam]
 gi|196022547|gb|EDX61230.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB108]
 gi|225789838|gb|ACO30055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB102]
 gi|228599685|gb|EEK57288.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC
           6E1]
          Length = 934

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|228926672|ref|ZP_04089741.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228833048|gb|EEM78616.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 934

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|229195843|ref|ZP_04322602.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1293]
 gi|228587616|gb|EEK45675.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1293]
          Length = 934

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|228945241|ref|ZP_04107597.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228814476|gb|EEM60741.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 934

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|303258008|ref|ZP_07344017.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
           1_1_47]
 gi|330999422|ref|ZP_08323136.1| putative DNA polymerase III, epsilon subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|302859351|gb|EFL82433.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
           1_1_47]
 gi|329574848|gb|EGG56407.1| putative DNA polymerase III, epsilon subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 196

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 95/175 (54%), Gaps = 5/175 (2%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R N+ R+I  D ETTG+    DRI+E+ A+E+ D      +F  F+ P  RK      ++
Sbjct: 18  RANRKRRIFLDTETTGMSQATDRIVEVCAIEVDDDFNEIDSFHAFINPQ-RKVPWFVTRI 76

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--P 120
           HG+ +EFL DKP FS I  +   F   + +E  AHN  FD G +NAE  R     L+   
Sbjct: 77  HGLNNEFLDDKPIFSDIGRDLLLFL--EGSELWAHNMSFDAGMLNAEFARNRLPTLEKVD 134

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R+  TL +AR   P  +N L++L  R+ I  S R  HGA++D+ LL  VY  ++
Sbjct: 135 CRLNCTLQLARSTFPGQKNSLDALLDRFAIDRSERRLHGAMIDTRLLVKVYQNLV 189


>gi|329667117|gb|AEB93065.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii DPC 6026]
          Length = 1432

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 13/207 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  +N+   ++FD+ETTGL S  D IIEIGAV++ +  +    F  F+ P+    S   +
Sbjct: 408 MDYRNR-EYVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDEFINPH-HPLSDTTI 464

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L  ITDE +        +  +F +F+ ++      HN +FDVGF+NA L+R   + +  
Sbjct: 465 NLTSITDEMVGVADDEKDVIKKFKEFYGDR--PLCGHNVQFDVGFVNAALRRAGLEEI-T 521

Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM---- 175
             ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++    
Sbjct: 522 QPVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFN 579

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPN 202
               + + G   +  ++ +  K+  P+
Sbjct: 580 ERFHEADLGKMNDYAKYGQVYKRAKPS 606


>gi|206974778|ref|ZP_03235693.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus H3081.97]
 gi|217959123|ref|YP_002337671.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus AH187]
 gi|222095271|ref|YP_002529331.1| bifunctional ATP-dependent DNA helicase/DNA polymerase iii subunit
           epsilon [Bacillus cereus Q1]
 gi|206746797|gb|EDZ58189.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus H3081.97]
 gi|217066733|gb|ACJ80983.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH187]
 gi|221239329|gb|ACM12039.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
          Length = 934

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|30261638|ref|NP_844015.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Ames]
 gi|47526838|ref|YP_018187.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184469|ref|YP_027721.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Sterne]
 gi|165869397|ref|ZP_02214056.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0488]
 gi|167639095|ref|ZP_02397368.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0193]
 gi|170706543|ref|ZP_02897003.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0389]
 gi|177650486|ref|ZP_02933453.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0174]
 gi|190568647|ref|ZP_03021552.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis Tsiankovskii-I]
 gi|227815611|ref|YP_002815620.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. CDC 684]
 gi|229602233|ref|YP_002866045.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0248]
 gi|254734478|ref|ZP_05192190.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Western North America
           USA6153]
 gi|254755128|ref|ZP_05207162.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Vollum]
 gi|254759665|ref|ZP_05211689.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Australia 94]
 gi|30255866|gb|AAP25501.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. Ames]
 gi|47501986|gb|AAT30662.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49178396|gb|AAT53772.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           anthracis str. Sterne]
 gi|164714837|gb|EDR20355.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0488]
 gi|167512885|gb|EDR88258.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0193]
 gi|170128641|gb|EDS97508.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0389]
 gi|172083630|gb|EDT68690.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0174]
 gi|190560247|gb|EDV14227.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis Tsiankovskii-I]
 gi|227006832|gb|ACP16575.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. CDC 684]
 gi|229266641|gb|ACQ48278.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0248]
          Length = 934

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|260365523|ref|ZP_05778060.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus K5030]
 gi|260877586|ref|ZP_05889941.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AN-5034]
 gi|260895401|ref|ZP_05903897.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|260901674|ref|ZP_05910069.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ4037]
 gi|308085274|gb|EFO34969.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308090931|gb|EFO40626.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AN-5034]
 gi|308108950|gb|EFO46490.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ4037]
 gi|308114429|gb|EFO51969.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus K5030]
          Length = 204

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 89/179 (49%), Gaps = 11/179 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M + N    +V D ETTGL     DR IEIGAV+L+D  +   +FQ  + P G + S   
Sbjct: 1   MPQANS--VVVLDFETTGLSPTLGDRAIEIGAVKLVDG-EVVDSFQQLMNP-GFRVSSFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+  L+  PS   + + F +F + +N   IAHNA FD  F++AEL+RIN     
Sbjct: 57  ENYTGITNNMLRTAPSCEEVMASFSEFIDGEN--LIAHNASFDKRFLDAELERINCG--Y 112

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 +L +ARR       + L  L +   I       H AL D+ + + +++ M+ G
Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDG-VFHRALADAQMTAKLWLLMVEG 170


>gi|257091883|ref|YP_003165524.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044407|gb|ACV33595.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 735

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 12/204 (5%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61
            + +   VFD ETTG++    D II+IGAV +++     N  F   + P  R   PE ++
Sbjct: 540 LSDLTYTVFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLVDPE-RFIRPEGIR 598

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI+D+ ++ +P+   +     DF N  +   +AHNA FD+ F+  + +R       P 
Sbjct: 599 IHGISDDMVRGQPNIEVVLPALHDFCN--DTVLVAHNAAFDMRFLQLKEERTGVAFSQP- 655

Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DTL ++   HP    + L+S+ +R GI I  R  H AL D+   ++V++KM+   +Q
Sbjct: 656 -VLDTLLLSGVLHPNQESHQLDSIAERLGIGIEDR--HNALGDACATAEVFLKMLPLLAQ 712

Query: 181 INFGFKTNEDRFFKEEKKTVPNIS 204
           +  G  T        EK     + 
Sbjct: 713 M--GITTLRQALEASEKTYFARVK 734


>gi|58337539|ref|YP_194124.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227904180|ref|ZP_04021985.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
 gi|58254856|gb|AAV43093.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227868199|gb|EEJ75620.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
          Length = 1437

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 8/175 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ +     R F  F+ P+    S + + 
Sbjct: 413 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH-HPLSEQTIN 470

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +      + +  +F DF+ ++      HN +FDVGF+NA L+R     +   
Sbjct: 471 LTSITDEMVSAADDEAIVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRNGFSEI-TQ 527

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DTL ++R  HP   R+ L+SL K+Y +++ H   H A  D+     +  K++
Sbjct: 528 PVVDTLEVSRLLHPEQNRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMYKLL 580


>gi|28378678|ref|NP_785570.1| DNA polymerase III PolC [Lactobacillus plantarum WCFS1]
 gi|254556876|ref|YP_003063293.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300768189|ref|ZP_07078094.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180817|ref|YP_003924945.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|32469698|sp|Q88VK2|DPO3_LACPL RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28271514|emb|CAD64419.1| DNA-directed DNA polymerase III, alpha chain PolC-type
           [Lactobacillus plantarum WCFS1]
 gi|254045803|gb|ACT62596.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300494253|gb|EFK29416.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046308|gb|ADN98851.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 1437

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 101/199 (50%), Gaps = 11/199 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD ETTGL +  DR+IE+ AV+++  +  ++ F+ F+ P G   S     L  ITD+
Sbjct: 422 YVIFDTETTGLSAIYDRVIELSAVKMVKGNVVDQ-FEEFIDP-GFHLSETTTNLTSITDD 479

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   S   +F  F +F+   +A  + HN  FD+GF+N    R +  P+  + IIDTL+
Sbjct: 480 MVRGSKSEEEVFKLFREFYG--DAIVVGHNVTFDIGFMNTGYARHHMGPI-TNPIIDTLT 536

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLS---DVYIKMMVGGSQINFG 184
           +AR  +P+ R   LN+L K++ + + H   H A+ D+        +++K      Q+ F 
Sbjct: 537 LARWLYPNLRGYRLNTLAKKFNVNLEHH--HRAIYDAETTGHLNHLFLKDAEDRYQVQFH 594

Query: 185 FKTNEDRFFKEEKKTVPNI 203
            + N+        +     
Sbjct: 595 DQLNDHMNENAAYRHARPF 613


>gi|81428867|ref|YP_395867.1| DNA polymerase III PolC [Lactobacillus sakei subsp. sakei 23K]
 gi|123564054|sp|Q38W73|DPO3_LACSS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|78610509|emb|CAI55560.1| DNA-directed DNA polymerase III, polC-type [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 1446

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 17/221 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL +  D IIE+ AV++ D  +   +F  F+ P  R  S    +L  IT+E
Sbjct: 425 YVIFDVETTGLSAVYDSIIELAAVKMRDG-EVVASFDEFIDPE-RPLSAFTTQLTSITNE 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +      + + + F +F    +A    HN  FD+GF+NA  +R + D +D + +IDTL 
Sbjct: 483 MVHGAKKEAEVLAMFKEF--TGDAVLAGHNVSFDMGFLNAGYERNDIDLID-NPVIDTLE 539

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---------MVGG 178
           ++R  HP  + + L+SL KRY I + H   H A  D+     +  K+         MV  
Sbjct: 540 LSRMLHPEYKNHKLDSLTKRYKINLEHH--HRANADAESTGYLLYKLEKEAAENYDMVNV 597

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           +Q+N      E          V         K LF  ++  
Sbjct: 598 NQLNDRVGVGEFYKQARPAHAVLMAQTQAGLKNLFKLVSAS 638


>gi|324325658|gb|ADY20918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 934

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|237734614|ref|ZP_04565095.1| DNA-directed DNA polymerase [Mollicutes bacterium D7]
 gi|229382434|gb|EEO32525.1| DNA-directed DNA polymerase [Coprobacillus sp. D7]
          Length = 1440

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 6/173 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL   +D I E GAV++ +    +R  Q+F+ P G+  S     L  IT++
Sbjct: 403 YVSFDLETTGLSVIHDGITEFGAVKIKNGEVIDR-LQMFVNP-GKSISSRITNLTSITND 460

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++++P+  ++     +FF+  +   +AHNA FD+GF+N  L+R N  P   + IID+L+
Sbjct: 461 MVRNEPTIDALLPRIIEFFD--DCILVAHNANFDIGFLNENLRR-NNMPEITNPIIDSLA 517

Query: 129 IAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +AR    P     L ++C+ Y +       H A  D+ +L DV+  M+    Q
Sbjct: 518 LARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAEVLGDVFNMMLHQIMQ 570


>gi|259415529|ref|ZP_05739450.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
 gi|259348759|gb|EEW60521.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
          Length = 473

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 90/176 (51%), Gaps = 7/176 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60
            + + +  +VFD ETTGL  + D I++I A  +++        F  ++ P GR   P + 
Sbjct: 263 TKLSDLCFVVFDTETTGLSVETDAIVQIAAQRVMNGRLVKGEVFDAYVNP-GRAIPPAST 321

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HG+ D  + D PS   +   F  F   ++A  +AHNA FD+G +  + +        P
Sbjct: 322 RIHGVRDADVADAPSIEQVIPAFHHF--SKDAVLVAHNAPFDIGLLRQQERATGIKWDHP 379

Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             ++DT+ ++      S  + L++LC+R  I I  + +H AL D+   ++  +K++
Sbjct: 380 --VLDTVLLSAVVFGISQEHSLDALCQRLAIEIPAQHRHTALGDAKATAEALVKLL 433


>gi|167756906|ref|ZP_02429033.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402]
 gi|167703081|gb|EDS17660.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402]
          Length = 1445

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 6/173 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL   +D I E GAV++ +    +R  Q+F+ P G+  S     L  IT++
Sbjct: 408 YVSFDLETTGLSVIHDGITEFGAVKIKNGEVIDR-LQMFVNP-GKSISSRITNLTSITND 465

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++++P+  ++     +FF+  +   +AHNA FD+GF+N  L+R N  P   + IID+L+
Sbjct: 466 MVRNEPTIDALLPRIIEFFD--DCILVAHNANFDIGFLNENLRR-NNMPEITNPIIDSLA 522

Query: 129 IAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +AR    P     L ++C+ Y +       H A  D+ +L DV+  M+    Q
Sbjct: 523 LARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAEVLGDVFNMMLHQIMQ 575


>gi|28900648|ref|NP_800303.1| hypothetical protein VPA0793 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153836411|ref|ZP_01989078.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ3810]
 gi|28809028|dbj|BAC62136.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149750313|gb|EDM61058.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ3810]
          Length = 214

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 89/179 (49%), Gaps = 11/179 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M + N    +V D ETTGL     DR IEIGAV+L+D  +   +FQ  + P G + S   
Sbjct: 11  MPQANS--VVVLDFETTGLSPTLGDRAIEIGAVKLVDG-EVVDSFQQLMNP-GFRVSSFI 66

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+  L+  PS   + + F +F + +N   IAHNA FD  F++AEL+RIN     
Sbjct: 67  ENYTGITNNMLRTAPSCEEVMASFSEFIDGEN--LIAHNASFDKRFLDAELERINCG--Y 122

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 +L +ARR       + L  L +   I       H AL D+ + + +++ M+ G
Sbjct: 123 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDG-VFHRALADAQMTAKLWLLMVEG 180


>gi|270290316|ref|ZP_06196541.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
 gi|270281097|gb|EFA26930.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
          Length = 1436

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 104/184 (56%), Gaps = 9/184 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++FD+ETTGL +  D++IE+ AV++ + +  +  F+ F+ P G   S   + L  IT+
Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDE-FEEFIDP-GFPLSETTINLTSITN 476

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +F++F +F+  ++A  + HN  FD+GF+N    R   + +  + IIDTL
Sbjct: 477 EMVRGSLSEKEVFTKFREFY--EDAIIVGHNVTFDIGFMNTGYLRHGMEEI-KNPIIDTL 533

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           ++AR  +P+ +   LN+L K++ + + H   H A+ D+     +   + +  ++  +G +
Sbjct: 534 TLARFLYPTLKGYRLNTLAKKFNVALEHH--HRAIYDAETTGHL-CYLFLKDAEERYGIE 590

Query: 187 TNED 190
            ++ 
Sbjct: 591 YHDQ 594


>gi|255523926|ref|ZP_05390889.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296185167|ref|ZP_06853577.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           carboxidivorans P7]
 gi|255512357|gb|EET88634.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296050001|gb|EFG89425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           carboxidivorans P7]
          Length = 1449

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 92/207 (44%), Gaps = 9/207 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     ++I EIG +++ D    ++ F  F+ P  +   P  +++  ITD+
Sbjct: 426 YCVLDLETTGFSPVIEKITEIGIMKIKDGKVIDK-FSCFVNPK-KPIPPRVVEVTNITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D  +   +F +  DF   +++  +AHNA+FD+GF+    + +  D       +DTL+
Sbjct: 484 MVRDAETIEQVFPKMLDFI--KDSVLVAHNAEFDIGFLKHNARVLGYDF--DFTYLDTLT 539

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P  +   L  + K  GI +     H AL D      ++  M+    +       
Sbjct: 540 LAQELFPDFKTYKLGRIAKNLGIKVE--VAHRALDDVDTTVKIFNVMLEKLKERGAETLQ 597

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFT 214
           + D +  +E         LK    +  
Sbjct: 598 DVDVYGSDEAAKKEEYKKLKTYHAIIL 624


>gi|304384865|ref|ZP_07367211.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
 gi|304329059|gb|EFL96279.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
          Length = 1436

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 104/184 (56%), Gaps = 9/184 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++FD+ETTGL +  D++IE+ AV++ + +  +  F+ F+ P G   S   + L  IT+
Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDE-FEEFIDP-GFPLSETTINLTSITN 476

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +F++F +F+  ++A  + HN  FD+GF+N    R   + +  + IIDTL
Sbjct: 477 EMVRGSLSEKEVFTKFREFY--EDAIIVGHNVTFDIGFMNTGYLRHGMEEI-KNPIIDTL 533

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           ++AR  +P+ +   LN+L K++ + + H   H A+ D+     +   + +  ++  +G +
Sbjct: 534 TLARFLYPTLKGYRLNTLAKKFNVALEHH--HRAIYDAETTGHL-CYLFLKDAEERYGIE 590

Query: 187 TNED 190
            ++ 
Sbjct: 591 YHDQ 594


>gi|312876753|ref|ZP_07736732.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796484|gb|EFR12834.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 1402

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG DS+ DRIIEIGAV++ +   T+R F  F+ P G K      +L GI  +
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITDR-FSTFVDPEG-KIPVRISELTGIYQD 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P       EF  F     +  +AHNA+FD+GF+    Q      +     IDTL 
Sbjct: 448 MVDKAPKLIDAILEFERF--ASGSVLVAHNAQFDIGFLKKAYQECGI--IFDYTYIDTLE 503

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++RR     S   LN + +   + + H   H A  D+   + ++I ++       +
Sbjct: 504 LSRRLLTDLSSYKLNKVAEFLNVELRHH--HRADSDAETTAGIFISLLERLKARGY 557


>gi|256843343|ref|ZP_05548831.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|293381212|ref|ZP_06627220.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus crispatus 214-1]
 gi|256614763|gb|EEU19964.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|290922252|gb|EFD99246.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus crispatus 214-1]
          Length = 1436

 Score =  168 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 8/175 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ +  +    F  F+ P+    S + + 
Sbjct: 412 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDKFINPH-HPLSEQTIN 469

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +      + +  +F DF+ ++      HN +FDVGF+NA L+R     +   
Sbjct: 470 LTSITDEMVGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEI-TQ 526

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DTL ++R  HP  SR+ L+SL K+Y +++ H   H A  D+     +  K++
Sbjct: 527 PVVDTLEVSRLLHPEQSRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMFKLL 579


>gi|295693139|ref|YP_003601749.1| DNA polymerase iii, alpha subunit [Lactobacillus crispatus ST1]
 gi|295031245|emb|CBL50724.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus ST1]
          Length = 1436

 Score =  168 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 8/175 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ +  +    F  F+ P+    S + + 
Sbjct: 412 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDKFINPH-HPLSEQTIN 469

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +      + +  +F DF+ ++      HN +FDVGF+NA L+R     +   
Sbjct: 470 LTSITDEMVGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEI-TQ 526

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DTL ++R  HP  SR+ L+SL K+Y +++ H   H A  D+     +  K++
Sbjct: 527 PVVDTLEVSRLLHPEQSRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMFKLL 579


>gi|90023051|ref|YP_528878.1| DNA-directed DNA polymerase [Saccharophagus degradans 2-40]
 gi|89952651|gb|ABD82666.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40]
          Length = 215

 Score =  168 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 60/192 (31%), Positives = 88/192 (45%), Gaps = 10/192 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV L +    +R FQ  + P G + S       GI + 
Sbjct: 16  VVLDFETTGLSPDMGDRAIEIGAVRLHNGEIVDR-FQALMNP-GFQISGFIASYTGIDNS 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P    +   F ++    N   +AHNA FD  F++AEL RI +          +L 
Sbjct: 74  MLAKAPPCDEVMDAFANYIGNDN--LVAHNASFDKRFLDAELYRIGRS--YSGDFTCSLL 129

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            ARR  P+   + L +L K   +  S  + H AL DS + + V++ M++   Q  +G   
Sbjct: 130 AARRLFPNAENHKLGTLVKHTKLQ-SDGAFHRALYDSEMTAKVWMVMLMQLQQ-AYGLNH 187

Query: 188 NEDRFFKEEKKT 199
                 ++  KT
Sbjct: 188 VPFSLIQKITKT 199


>gi|42780745|ref|NP_977992.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus ATCC 10987]
 gi|42736665|gb|AAS40600.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           cereus ATCC 10987]
          Length = 934

 Score =  168 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|256375516|ref|YP_003099176.1| hypothetical protein Amir_1378 [Actinosynnema mirum DSM 43827]
 gi|255919819|gb|ACU35330.1| DNA polymerase III, epsilon subunit [Actinosynnema mirum DSM 43827]
          Length = 578

 Score =  168 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 17/212 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
               +   +VFD+ETTG  +  D I EIGAV++         F   + P  R   P+ + 
Sbjct: 24  TPLRETTFVVFDLETTGPRAAEDGITEIGAVKVRGGRVIGE-FGTLVDPE-RGIPPQIVA 81

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT   +   P  +S+   F +F   + A  +AHN+ FDVGF+ A  +R       P 
Sbjct: 82  LTGITQNMVTGAPVLASVLPAFLEF--AEGAVLVAHNSGFDVGFMKAACERHGYAWPKP- 138

Query: 122 RIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            ++ T+ +ARR   +  +    L++L   +G+  +    H AL+D+    +V  +++   
Sbjct: 139 PVVCTVKLARRVLSREEAPSCKLSALSALFGVPEA--PNHRALVDARATVEVLHRLLERV 196

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
             +            +E    +P++S  +R K
Sbjct: 197 GSVGVH-------SLEELLAYLPDVSPQQRRK 221


>gi|315497459|ref|YP_004086263.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB
           48]
 gi|315415471|gb|ADU12112.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB
           48]
          Length = 717

 Score =  168 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 93/168 (55%), Gaps = 10/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG  S N+R+ EIGAV++ +    + T+Q  + P  R+  P   +L GI++ 
Sbjct: 545 YTVVDIETTGGQSANERVTEIGAVKIRNGEIID-TWQSLINPE-RRIPPFITELTGISNA 602

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P F+ I  +F  F   +   ++AHN  FD GF++AE +R+ +    P   + T++
Sbjct: 603 MVRDAPRFADIADDFDAFL--KGTVFVAHNVNFDYGFLSAEYRRLERPFRYP--KMCTVA 658

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             RR  P  +   L  L + +GI +  ++ H AL D+   +++ +K++
Sbjct: 659 SMRRHFPGLAAYGLGPLSREFGIEL--KNHHRALSDAMAAAEL-LKLI 703


>gi|126729411|ref|ZP_01745225.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Sagittula stellata E-37]
 gi|126710401|gb|EBA09453.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Sagittula stellata E-37]
          Length = 468

 Score =  168 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 10/204 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60
           +   ++   V D ETTGL    D I++IGAV +++            + P GR   P + 
Sbjct: 269 MPLGRLTYTVLDTETTGLLPHKDEIVQIGAVRIVNGRIVPGERMDQLVNP-GRPIPPASS 327

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K+HG+TD  +   P  +     F  F   +++  +AHNA FD+ F++    R+  +   P
Sbjct: 328 KVHGVTDAMVAGAPGIAEAGRRFHTF--ARDSVIVAHNAPFDMAFLHRHKTRMGVEWTHP 385

Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             I+DT+ ++     +S+ + L++LC R  +TI    +H AL D+   ++V+ +M+    
Sbjct: 386 --ILDTVLLSAVLFGASQTHTLDALCDRLAVTIPPNLRHTALGDAQATAEVFGRMLPMLE 443

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203
               G  T ED    E K+    I
Sbjct: 444 --ARGMTTLED-VLAETKRHGRLI 464


>gi|326803581|ref|YP_004321399.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651581|gb|AEA01764.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 1437

 Score =  168 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 11/199 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL +  + IIEIGAV++   +     F  FL P G   S    +L GITD 
Sbjct: 421 YVIFDVETTGLSAVYNTIIEIGAVKMHKGNVVGE-FSEFLNP-GHHLSSFTTELTGITDS 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +      +  +F DF   Q    +AHNA FDVGFI+A  QR     ++ + +IDTL 
Sbjct: 479 MVANARPEPEVMQDFLDFC--QGTILVAHNASFDVGFIDAAYQRNGLPTIE-NPVIDTLE 535

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSH---LLSDVYIKMMVGGSQINFG 184
           +AR  +P  ++  LN+L K + +++ H   H A+ D+     L+ +++K       + + 
Sbjct: 536 LARYLYPHLKSFRLNTLSKHFNVSLEHH--HRAIYDATSTGALAWIFVKEAKESHDMVYH 593

Query: 185 FKTNEDRFFKEEKKTVPNI 203
            + N D    +  K     
Sbjct: 594 DQLNRDIGQGDAYKKGRPF 612


>gi|91225444|ref|ZP_01260566.1| hypothetical protein V12G01_08955 [Vibrio alginolyticus 12G01]
 gi|91189807|gb|EAS76080.1| hypothetical protein V12G01_08955 [Vibrio alginolyticus 12G01]
          Length = 204

 Score =  168 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 13/204 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M + N    +V D ETTGL     DR IEIGAV+L++  +   +FQ  + P G + S   
Sbjct: 1   MPQANS--VVVLDFETTGLSPTLGDRAIEIGAVKLVNG-EVVDSFQQLMNP-GFRVSSFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+  L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RIN     
Sbjct: 57  ENYTGITNNMLRSAPSCEEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCG--Y 112

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 +L +ARR       + L  L +   I       H AL D+ + + +++ M+ G 
Sbjct: 113 SGEFACSLLVARRLIQEAPSHKLGELVRYKNIDNDG-VFHRALADAQMTAKLWLLMVEGI 171

Query: 179 SQINFGFKTNEDRFFKEEKKTVPN 202
              N G +    +  +   KT   
Sbjct: 172 E--NSGVEKPSFQLMQTVSKTAKG 193


>gi|301053179|ref|YP_003791390.1| ATP-dependent DNA helicase [Bacillus anthracis CI]
 gi|300375348|gb|ADK04252.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 934

 Score =  168 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|116492651|ref|YP_804386.1| DNA polymerase III PolC [Pediococcus pentosaceus ATCC 25745]
 gi|122265885|sp|Q03FS8|DPO3_PEDPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116102801|gb|ABJ67944.1| DNA polymerase III catalytic subunit, PolC type [Pediococcus
           pentosaceus ATCC 25745]
          Length = 1437

 Score =  168 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 106/184 (57%), Gaps = 9/184 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++FD+ETTGL +  D++IE+ AV++ + +  ++ F+ F+ P G   S   + L  ITD
Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDQ-FEEFIDP-GFPLSETTINLTSITD 476

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   S   +F++F +F+  ++A  + HN  FD+GF+N    R   + +  + IIDTL
Sbjct: 477 EMVRGSMSEKEVFTKFREFY--EDAIIVGHNVTFDIGFMNTGYLRHGMEEI-KNPIIDTL 533

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           ++AR  +P+ +   LN+L K++G+ + H   H A+ DS     +   + +  ++  +G +
Sbjct: 534 TLARFLYPTLKGYRLNTLAKKFGVALEHH--HRAIYDSETTGHL-CYLFLKDAEERYGIE 590

Query: 187 TNED 190
            ++ 
Sbjct: 591 YHDQ 594


>gi|51892650|ref|YP_075341.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
           14863]
 gi|51856339|dbj|BAD40497.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
           14863]
          Length = 1475

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 12/183 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG     D IIE+GAV      +   +FQ F+ P  +   PE  KL  IT +
Sbjct: 454 FVVLDIETTGFSPIGDDIIELGAVRCR-GGEIVDSFQSFVRPT-KPVPPEVQKLTNITPD 511

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P  +     F+ F    +A  +AHNA+FD  F+    Q+   +    + ++DTL+
Sbjct: 512 MLEGAPEAAEALRAFFQFVG--DAIVVAHNAQFDYSFLRYHRQKYLGEEFA-NPVLDTLT 568

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR   P  R + L +L K   + +     H A  D+   + V +K++        G +T
Sbjct: 569 LARAVLPHMRSHSLAALTKELQVPLVDH--HRADADAKTAAMVLMKLLERAE----GVET 622

Query: 188 NED 190
             D
Sbjct: 623 VAD 625


>gi|229121184|ref|ZP_04250421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           95/8201]
 gi|228662303|gb|EEL17906.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           95/8201]
          Length = 934

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|226312093|ref|YP_002771987.1| ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
 gi|226095041|dbj|BAH43483.1| probable ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
          Length = 967

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D ETTG   +  D II+IGAV  +D  +   +F   + P G+   P   +L GIT
Sbjct: 3   RLLVVDFETTGSHPRQGDSIIQIGAV-AIDDGQITESFSTLIHP-GQDIPPFITQLTGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E + D PS   +F +F    + +   ++AHNA FD+ F+   L        D   ++DT
Sbjct: 61  NEMVADAPSLEEVFPDFLRLLDGR--AFVAHNASFDLQFLQEALLSQGYYAFD-GYVLDT 117

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + ++R   P      L  L     + I H + H A  D+   + +++ ++
Sbjct: 118 VELSRVLLPMQNSYRLGELASE--LEIEHDNPHQADSDALATAQLFLHLL 165


>gi|227878821|ref|ZP_03996728.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|227861569|gb|EEJ69181.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
          Length = 1436

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +  +    F  F+ P+    S + + L  ITDE
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDKFINPH-HPLSEQTINLTSITDE 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +      + +  +F DF+ ++      HN +FDVGF+NA L+R     +    ++DTL 
Sbjct: 477 MVGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEI-TQPVVDTLE 533

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R  HP  SR+ L+SL K+Y +++ H   H A  D+     +  K++
Sbjct: 534 VSRLLHPEQSRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMFKLL 579


>gi|52143806|ref|YP_083022.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus E33L]
 gi|51977275|gb|AAU18825.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
          Length = 934

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|228984721|ref|ZP_04144893.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228774919|gb|EEM23313.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 934

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|65318908|ref|ZP_00391867.1| COG1199: Rad3-related DNA helicases [Bacillus anthracis str. A2012]
          Length = 934

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  E ++     +     +D
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEEXRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|49477263|ref|YP_035758.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196033564|ref|ZP_03100976.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus W]
 gi|218902753|ref|YP_002450587.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH820]
 gi|49328819|gb|AAT59465.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|195993998|gb|EDX57954.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus W]
 gi|218538657|gb|ACK91055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH820]
          Length = 934

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|256849838|ref|ZP_05555269.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|256713327|gb|EEU28317.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
          Length = 1436

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL S  D IIEIGAV++ +  +    F  F+ P+    S + + L  ITDE
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDKFINPH-HPLSEQTINLTSITDE 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +      + +  +F DF+ ++      HN +FDVGF+NA L+R     +    ++DTL 
Sbjct: 477 MVGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEI-TQPVVDTLE 533

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R  HP  SR+ L+SL K+Y +++ H   H A  D+     +  K++
Sbjct: 534 VSRLLHPEQSRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMFKLL 579


>gi|153954051|ref|YP_001394816.1| DNA polymerase III PolC [Clostridium kluyveri DSM 555]
 gi|219854664|ref|YP_002471786.1| hypothetical protein CKR_1321 [Clostridium kluyveri NBRC 12016]
 gi|146346932|gb|EDK33468.1| PolC [Clostridium kluyveri DSM 555]
 gi|219568388|dbj|BAH06372.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1439

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTG    ND IIEIGA+++ +     + F  F+ P  R       +L GITDE
Sbjct: 426 FVIFDIETTGFSMTNDNIIEIGAIKIKEGKVVGK-FSEFVNPE-RPIPLTITQLTGITDE 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++  S   I  +F +F +  N+  +AHNA FDVGFI      +N    +P  ++DT+ 
Sbjct: 484 MVQNCESIKYILPKFMEFID--NSVVVAHNANFDVGFIKKNCMELNLKFKNP--VMDTIP 539

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184
           + +   P   R  LN + K   I++ +   H A+ D+    ++ +   KM+   + ++ G
Sbjct: 540 LCKFLFPELKRFKLNVVAKHLDISLENH--HRAVDDAGATCEILLRCFKMLKEKNILSLG 597


>gi|56696683|ref|YP_167044.1| DNA polymerase III epsilon subunit family exonuclease [Ruegeria
           pomeroyi DSS-3]
 gi|56678420|gb|AAV95086.1| exonuclease, DNA polymerase III, epsilon subunit family [Ruegeria
           pomeroyi DSS-3]
          Length = 470

 Score =  168 bits (426), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 7/169 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
             VFD ETTGL    D I++IGAV ++             + P GR   P + ++HG++D
Sbjct: 278 FAVFDTETTGLLPHKDEIVQIGAVRVVKGRIVPGERIDQLVDP-GRPIPPASTRVHGVSD 336

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P   +   +F  F   ++A  +AHNA FD+ F+     R   D   P  I+DT+
Sbjct: 337 AMVAGAPDIVAAARQFHQF--ARDAVIVAHNAPFDIAFLRRHGPRCGLDWDHP--ILDTV 392

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++     +S  + L++LC R G+TI    +H AL D+   ++V  +M+
Sbjct: 393 LLSAVLFGASETHTLDALCDRLGVTIPAPLRHTALGDAQATAEVLCRML 441


>gi|254229191|ref|ZP_04922610.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp.
           Ex25]
 gi|262395541|ref|YP_003287394.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25]
 gi|151938276|gb|EDN57115.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp.
           Ex25]
 gi|262339135|gb|ACY52929.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25]
          Length = 204

 Score =  168 bits (426), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 88/179 (49%), Gaps = 11/179 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M + N    +V D ETTGL     DR IEIGAV+L+D  +   +FQ  + P G + S   
Sbjct: 1   MPQANS--VVVLDFETTGLSPTLGDRAIEIGAVKLVDG-EVVDSFQRLMNP-GFRVSSFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+  L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RIN     
Sbjct: 57  ENYTGITNNMLRSAPSCEEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCG--Y 112

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 +L +ARR       + L  L +   I       H AL D+ + + +++ M+ G
Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDG-VFHRALADAQMTAKLWLLMVEG 170


>gi|257055123|ref|YP_003132955.1| hypothetical protein Svir_10720 [Saccharomonospora viridis DSM
           43017]
 gi|256584995|gb|ACU96128.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Saccharomonospora viridis DSM 43017]
          Length = 570

 Score =  168 bits (426), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 25/226 (11%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
               ++  +V D+ETTG+      I EIGAV++         F   + P G    P+ + 
Sbjct: 10  TPLREVTFVVVDLETTGVTPDGAGITEIGAVKVRGGEVVGE-FATLVDP-GVPIPPQIVA 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT   ++  P    +   F +F +   A  +AHNA FDV F+ A  Q    +   P 
Sbjct: 68  LTGITPAMVRSAPRIEQVLPTFLEFVS--GAVLVAHNAGFDVSFLKAACQTHGYEWPKP- 124

Query: 122 RIIDTLSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            ++ TL +ARR         + L++L   +G   +   KH AL D+    DV   ++   
Sbjct: 125 TVVCTLKLARRVLGRQETRGHRLSTLASLFGARST--PKHRALDDAKATVDVLHGLLERV 182

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
             +         +  +E    +  ++  +R K          L  H
Sbjct: 183 GPLGV-------QSLEELLDYLRAVTPAQRRK--------RGLAAH 213


>gi|326791606|ref|YP_004309427.1| DNA polymerase III subunit alpha [Clostridium lentocellum DSM 5427]
 gi|326542370|gb|ADZ84229.1| DNA polymerase III, alpha subunit [Clostridium lentocellum DSM
           5427]
          Length = 1468

 Score =  168 bits (426), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG   K +RIIEIGAV+++   +   TF  F+ P       +  KL GI D 
Sbjct: 442 YVVFDLETTGFSPKMNRIIEIGAVKVV-GGQIVDTFSEFVNPK-VPIPYQIEKLTGINDR 499

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +  +   +  +F  F   +    +AHNA FD+ FI A  +           ++DT++
Sbjct: 500 MVMEAETIEVLLPQFLAFC--EGCVMVAHNADFDMSFIEANAKEQGLAA--DFTVMDTVA 555

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +AR   P      LN++ K   I++ +   H A+ D+    +++++ +    +
Sbjct: 556 LARILMPHLGNFKLNNVAKHLDISLENH--HRAVDDATATGEIFVRFIEMLQE 606


>gi|160915589|ref|ZP_02077800.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991]
 gi|158432709|gb|EDP10998.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991]
          Length = 1447

 Score =  168 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 5/181 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   +    VFD+ETTGL S+ D IIE G   + D +   ++ Q+F+ P         ++
Sbjct: 392 IGLEEGTYCVFDLETTGLSSRFDHIIEFGGQIVKDRTCI-KSLQLFIKPP-VPIPAHIVE 449

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GI++E +++  SF+    +  DF    ++  +AHNA FD  F+N+EL RI + PLD +
Sbjct: 450 LTGISEEHVRNAKSFAECADQILDFIG--DSILVAHNADFDYNFLNSELVRIGRKPLD-N 506

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +IDTL +AR         L  + + YGI       H A  D+ +L++ Y+ M+     I
Sbjct: 507 PVIDTLDLARSMQDRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLANTYMNMLNDLKHI 566

Query: 182 N 182
            
Sbjct: 567 Q 567


>gi|315443891|ref|YP_004076770.1| exonuclease, DNA polymerase III subunit epsilon family
           [Mycobacterium sp. Spyr1]
 gi|315262194|gb|ADT98935.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Mycobacterium sp. Spyr1]
          Length = 617

 Score =  168 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 20/213 (9%)

Query: 4   KNKMRKIVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             +   +V D+ETTG  +  DR   I EIGAV++         F   + P GR   P+ +
Sbjct: 17  LRETTFVVVDLETTGGRASGDRHDAITEIGAVKVRGGEVLGE-FATLVDP-GRAIPPQIV 74

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GIT   + D P   S+   F +F   + A  +AHNA FD+GF+ A  +R N+ P   
Sbjct: 75  ALTGITSAMVYDAPRIESVLPSFLEFC--RGAVLVAHNAGFDMGFLRAAAER-NQVPWPK 131

Query: 121 SRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             ++ T+++ARR           L++L + +G + +    H AL D+    DV   ++  
Sbjct: 132 PPVLCTVALARRVLTRDEAPSVKLSALARLFGASTT--PTHRALDDARATVDVLHALIER 189

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
               N G  T     + E +  +P+++  +R K
Sbjct: 190 VG--NQGVHT-----YAELRAYLPDVTPAQRRK 215


>gi|145223545|ref|YP_001134223.1| hypothetical protein Mflv_2958 [Mycobacterium gilvum PYR-GCK]
 gi|145216031|gb|ABP45435.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK]
          Length = 617

 Score =  168 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 20/213 (9%)

Query: 4   KNKMRKIVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             +   +V D+ETTG  +  DR   I EIGAV++         F   + P GR   P+ +
Sbjct: 17  LRETTFVVVDLETTGGRASGDRHDAITEIGAVKVRGGEVLGE-FATLVDP-GRAIPPQIV 74

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GIT   + D P   S+   F +F   + A  +AHNA FD+GF+ A  +R N+ P   
Sbjct: 75  ALTGITSAMVYDAPRIESVLPSFLEFC--RGAVLVAHNAGFDMGFLRAAAER-NQVPWPK 131

Query: 121 SRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             ++ T+++ARR           L++L + +G + +    H AL D+    DV   ++  
Sbjct: 132 PPVLCTVALARRVLTRDEAPSVKLSALARLFGASTT--PTHRALDDARATVDVLHALIER 189

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
               N G  T     + E +  +P+++  +R K
Sbjct: 190 VG--NQGVHT-----YAELRAYLPDVTPAQRRK 215


>gi|229552421|ref|ZP_04441146.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314158|gb|EEN80131.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 1437

 Score =  168 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 17/219 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P G   S   + L  ITD+
Sbjct: 414 YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDP-GFPLSELTINLTHITDD 471

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    S   +F  F  F +   A  + HN  FDVGF++   +R     +D + +IDTL 
Sbjct: 472 MVHGSKSEEEVFRLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 528

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---------MVGG 178
           ++R  HP  + + L++L K+Y +++ H   H A  D+     +   +         M   
Sbjct: 529 LSRMLHPERKNHKLDTLAKQYKVSLEHH--HRANADAEATGYLLYALEKEAAKMYNMTKL 586

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
           +Q+N      E          +         K LF  ++
Sbjct: 587 NQLNDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVS 625


>gi|94501331|ref|ZP_01307852.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65]
 gi|94426602|gb|EAT11589.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65]
          Length = 738

 Score =  168 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 9/167 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   ++ D+ETTG   +  R+ E+G V++L+    +  +Q  + P  R       +L GI
Sbjct: 570 EQPYVIVDVETTGGRKEQHRVTEVGMVKVLNGEIVDE-WQSLINP-MRHIPQSITRLTGI 627

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++E + + P F  +  E  +F     + ++AHN  FD GF  +E +R+ +     +  + 
Sbjct: 628 SNEMVSNAPVFDDVADEIAEFCA--GSVFVAHNVNFDYGFFRSEFERLGRRF--HAPKLC 683

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           T+ ++R+  P  S   L  LC    I + +   H AL D+   + V+
Sbjct: 684 TVQMSRKYLPGHSSYSLGKLCAALDIDLENH--HRALDDAKAAAHVF 728


>gi|229043387|ref|ZP_04191104.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH676]
 gi|228725968|gb|EEL77208.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH676]
          Length = 934

 Score =  168 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVEMAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|116333947|ref|YP_795474.1| DNA polymerase III PolC [Lactobacillus brevis ATCC 367]
 gi|122269369|sp|Q03QS9|DPO3_LACBA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116099294|gb|ABJ64443.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           brevis ATCC 367]
          Length = 1445

 Score =  168 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 99/198 (50%), Gaps = 11/198 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV+ +++      F+ F+ P G   S +   L  ITD+
Sbjct: 425 YVVFDVETTGLSAIYDKVIELSAVK-MEHQNVVDQFEEFIDP-GFPLSEQTTNLTSITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    S   +F  F +F    +A  + HN  FDVGF+N   QR     +  + IIDTL+
Sbjct: 483 MVAGSKSEEEVFKLFREFCG--DAIIVGHNVTFDVGFMNTGYQRHGMAEIS-NPIIDTLT 539

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVGGSQINFG 184
           +AR  +P+ +   LN+L KR+ +++ H   H A+ D+        +++K       I + 
Sbjct: 540 LARFLYPTLKSYRLNTLAKRFHVSLEHH--HRAVYDAESTGHLNYLFLKDAEDRYDIQYH 597

Query: 185 FKTNEDRFFKEEKKTVPN 202
            + N+     +  K    
Sbjct: 598 DQLNDHMTDNDAYKHARP 615


>gi|110598328|ref|ZP_01386602.1| DNA polymerase III, epsilon subunit [Chlorobium ferrooxidans DSM
           13031]
 gi|110340026|gb|EAT58527.1| DNA polymerase III, epsilon subunit [Chlorobium ferrooxidans DSM
           13031]
          Length = 219

 Score =  168 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 10/189 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M RK     +V D ETTGL  +  DR IEIGAV L +     R FQ  + P G + S   
Sbjct: 1   MQRKLAESVVVLDFETTGLSPEYGDRAIEIGAVLLEEGEIVGR-FQKLMNP-GFRISQFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+E LK +P    + +EF +F   +N   +AHNA FD  F++ EL+R  +    
Sbjct: 59  EGYTGITNEMLKGQPCCEEVMAEFSEFIAGRN--IVAHNAAFDRRFLDFELKRAKR--AY 114

Query: 120 PSRIIDTLSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 +L ++RR +  S  + L +L    GI  +    H AL D+ + + +++ M+   
Sbjct: 115 EGSCCCSLLVSRRIYQDSPNHRLQTLVSHAGIRQTG-VFHRALADAEMTAQLWLSMIERI 173

Query: 179 SQINFGFKT 187
            +  +G  T
Sbjct: 174 RR-QYGMPT 181


>gi|258508612|ref|YP_003171363.1| DNA polymerase III PolC [Lactobacillus rhamnosus GG]
 gi|257148539|emb|CAR87512.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
 gi|259649919|dbj|BAI42081.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
          Length = 1444

 Score =  168 bits (425), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 17/219 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P G   S   + L  ITD+
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDP-GFPLSELTINLTHITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    S   +F  F  F +   A  + HN  FDVGF++   +R     +D + +IDTL 
Sbjct: 479 MVHGSKSEEEVFRLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 535

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---------MVGG 178
           ++R  HP  + + L++L K+Y +++ H   H A  D+     +   +         M   
Sbjct: 536 LSRMLHPERKNHKLDTLAKQYKVSLEHH--HRANADAEATGYLLYALEKEAAKMYNMTKL 593

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
           +Q+N      E          +         K LF  ++
Sbjct: 594 NQLNDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVS 632


>gi|229084648|ref|ZP_04216916.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-44]
 gi|228698671|gb|EEL51388.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-44]
          Length = 930

 Score =  168 bits (425), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 89/179 (49%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I ++ AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQVAAVVVEDG-EILEIFSSFVNPE-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            ++ +K  P F  +     +    Q A ++AHN  FD  F+  EL++     ++  + ID
Sbjct: 62  DEDLVKQAPLFCDVAPMIVELL--QGAYFVAHNVHFDWNFLREELKQAGYGEVN-CQKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           T+ +A+   P++    L  L K++   + H   H A  D+ + ++++++ +    Q+  
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALVTAELFLQFLNQLEQLPL 175


>gi|229172279|ref|ZP_04299843.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3]
 gi|228611267|gb|EEK68525.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3]
          Length = 934

 Score =  168 bits (425), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL+      +     +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRWAGYTEVH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|332686699|ref|YP_004456473.1| DNA polymerase III subunit alpha [Melissococcus plutonius ATCC
           35311]
 gi|332370708|dbj|BAK21664.1| DNA polymerase III alpha subunit [Melissococcus plutonius ATCC
           35311]
          Length = 1450

 Score =  168 bits (425), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 11/184 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +  + TF+ F+ P G   S   + L GIT+E
Sbjct: 425 YVVFDVETTGLSAVYDTIIELSAVKMHKGNVID-TFEQFINP-GHPLSQTTIHLTGITNE 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D  S   + + F  F   +N   +AHNA FD+GF+N   ++    P   + +IDTL 
Sbjct: 483 MVSDAKSEKVVLNMFKKF--SENTILVAHNAAFDMGFLNTSYRKYKI-PEAENPVIDTLE 539

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGGSQINFG 184
           +AR  +P+ + + LN L K++G+ +     H A+ DS     +   ++K       +N+ 
Sbjct: 540 LARYLYPTLKSHRLNVLAKKFGVGLEQH--HRAIYDSEATGHLCWIFLKETKEKFSMNYH 597

Query: 185 FKTN 188
            + N
Sbjct: 598 DELN 601


>gi|199597102|ref|ZP_03210534.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
 gi|199591906|gb|EDY99980.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
          Length = 1444

 Score =  168 bits (425), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 17/219 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P G   S   + L  ITD+
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDP-GFPLSELTINLTHITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    S   +F  F  F +   A  + HN  FDVGF++   +R     +D + +IDTL 
Sbjct: 479 MVHGSKSEEEVFRLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 535

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---------MVGG 178
           ++R  HP  + + L++L K+Y +++ H   H A  D+     +   +         M   
Sbjct: 536 LSRMLHPERKNHKLDTLAKQYKVSLEHH--HRANADAEATGYLLYALEKEAAKMYNMTKL 593

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
           +Q+N      E          +         K LF  ++
Sbjct: 594 NQLNDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVS 632


>gi|225849433|ref|YP_002729598.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644689|gb|ACN99739.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 205

 Score =  167 bits (424), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 87/168 (51%), Gaps = 7/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTGL+  N  IIEI A+  ++       F   + P+         KL GIT+ 
Sbjct: 11  FLIVDLETTGLNPVNSEIIEIAALR-VEGGIVVDKFHTLVKPSIGFIPTYITKLTGITNA 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + DKP+   +F +F  F   +N+  +AHNA+FD+ F+N+   +I    +  + ++ T +
Sbjct: 70  LVVDKPTIEEVFPQFLKF--SENSIIVAHNAQFDMSFLNSVSYQITGRSI-QNPVLCTQN 126

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+R  P      L +L   + I  + +  H AL D+ +  +++ K++
Sbjct: 127 LAKRLFPDLPSKSLVNLAYHFNIPYNKK--HRALEDALVTYELFKKII 172


>gi|317132568|ref|YP_004091882.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense
           YUAN-3]
 gi|315470547|gb|ADU27151.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense
           YUAN-3]
          Length = 1457

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 12/178 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL+ +NDRI EIGAV + +  +    F +F+ P+ +   P   +L GITD+
Sbjct: 443 FVAFDLETTGLNRENDRITEIGAVRIRNG-EIGERFDLFVNPH-KPIPPRITELTGITDD 500

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD         +F+ F    +A  +AHNA+FD GF  A   R   +   P   +D++ 
Sbjct: 501 MVKDAAEEDEALRQFFAFCG--DAVLVAHNAEFDTGFCRAAAARCGMEF--PYTYMDSIP 556

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY---IKMMVGGSQIN 182
           + R   P  +N  L+++    G+ +   + H A  D+ +L  +    + M+     + 
Sbjct: 557 LCRTVLPGLKNYKLDTVAG--GLHLPPFNHHRASDDAFVLGQILVQVLDMLREQKGVG 612


>gi|229918731|ref|YP_002887377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Exiguobacterium sp. AT1b]
 gi|229470160|gb|ACQ71932.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium sp.
           AT1b]
          Length = 936

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            ++ D+ETTG   K  D +IE  AV + +     R +   + P+ R   P   +L  I+D
Sbjct: 4   YVIVDLETTGHSVKSGDELIEFAAVVVQEGEVIER-YSTLIRPS-RPIPPFITQLTTISD 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + D P+F  +  + W   + +   ++AHN  FD+ F+N  L++         R IDT+
Sbjct: 62  EDVSDAPTFEDVIPDIWKMLDGR--VFVAHNVAFDLTFLNESLEQAGYLAF-QGRAIDTV 118

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +AR  +P+   + L +L   +   + H   H AL D+   ++++I+M+
Sbjct: 119 ELARILYPTLESHALEALSDTF--DLVHTDAHRALSDAEATAELFIRML 165


>gi|256961318|ref|ZP_05565489.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|256951814|gb|EEU68446.1| DNA polymerase III [Enterococcus faecalis Merz96]
          Length = 1439

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 407 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 464

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 465 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 521

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 522 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 579

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 580 NHDMHFHDDLNRHIGEGDSY-------KRARP 604


>gi|256956660|ref|ZP_05560831.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|256947156|gb|EEU63788.1| DNA polymerase III [Enterococcus faecalis DS5]
          Length = 1439

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 407 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 464

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 465 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 521

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 522 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 579

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 580 NHDMHFHDDLNRHIGEGDSY-------KRARP 604


>gi|256763072|ref|ZP_05503652.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256963554|ref|ZP_05567725.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|256684323|gb|EEU24018.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256954050|gb|EEU70682.1| DNA polymerase III [Enterococcus faecalis HIP11704]
          Length = 1439

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 407 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 464

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 465 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 521

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 522 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 579

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 580 NHDMHFHDDLNRHIGEGDSY-------KRARP 604


>gi|154505436|ref|ZP_02042174.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149]
 gi|153794279|gb|EDN76699.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149]
          Length = 219

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTG+ +  D IIEI AV+ +       TF   + P GR    +A K++GITD+
Sbjct: 15  YTVFDLETTGISANMDDIIEISAVK-VKGGIVQDTFSTLVNP-GRHIPAQATKVNGITDQ 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127
            + + P      +EF  F  E     + HN   FD+ FI  E++ + ++ +  +  IDTL
Sbjct: 73  MVSEAPLIREAMTEFLRFVGED--ILVGHNIQSFDMKFIYREVEELFQETVS-NDFIDTL 129

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +AR+  P  ++  L  L + +GI  S +  H AL D  +    + +M
Sbjct: 130 YMARKCLPELKHHRLTDLAEHFGI--SSKGAHRALNDCVMNQKCFEEM 175


>gi|312978245|ref|ZP_07789989.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus
           crispatus CTV-05]
 gi|310894963|gb|EFQ44033.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus
           crispatus CTV-05]
          Length = 836

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 8/175 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ +  +    F  F+ P+    S + + 
Sbjct: 412 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDKFINPH-HPLSEQTIN 469

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +      + +  +F DF+ ++      HN +FDVGF+NA L+R     +   
Sbjct: 470 LTSITDEMVGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEI-TQ 526

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DTL ++R  HP  SR+ L+SL K+Y +++ H   H A  D+     +  K++
Sbjct: 527 PVVDTLEVSRLLHPEQSRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMFKLL 579


>gi|229029323|ref|ZP_04185411.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1271]
 gi|228731982|gb|EEL82876.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1271]
          Length = 934

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEVH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|257087409|ref|ZP_05581770.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|256995439|gb|EEU82741.1| DNA polymerase III [Enterococcus faecalis D6]
          Length = 1439

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 407 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 464

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 465 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 521

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 522 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 579

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 580 NHDMHFHDDLNRHIGEGDSY-------KRARP 604


>gi|255972152|ref|ZP_05422738.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|257079586|ref|ZP_05573947.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|257082034|ref|ZP_05576395.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|257084659|ref|ZP_05579020.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257416589|ref|ZP_05593583.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
 gi|255963170|gb|EET95646.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|256987616|gb|EEU74918.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|256990064|gb|EEU77366.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|256992689|gb|EEU79991.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257158417|gb|EEU88377.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
          Length = 1439

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 407 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 464

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 465 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 521

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 522 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 579

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 580 NHDMHFHDDLNRHIGEGDSY-------KRARP 604


>gi|237785314|ref|YP_002906019.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758226|gb|ACR17476.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 616

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 13/214 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGL +  DRIIEIGAV++    + +R F  F+ P GR   P    + GI+D+
Sbjct: 34  FVVVDLETTGLSAHEDRIIEIGAVKIHGGEEISR-FSTFVDP-GRLIPPLITNITGISDD 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  +    +F +F   +    +AHNA+FD+GF+ A   R +     P   + TL 
Sbjct: 92  DVNGAPKEAQAVKDFLEF--ARGTVLVAHNARFDIGFLQAASMRAHITWPQP-THLCTLV 148

Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +AR            L+SL + +  T +    H AL D+     V+  ++    ++    
Sbjct: 149 LARTMLDRCAVGSFKLSSLARHFHATTT--PTHRALDDALATVTVFHGLL---EELGSHD 203

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
             +         +     S+ +   P  T I+  
Sbjct: 204 IIHVGDIPTRPSRGAAGASVFQVPTPDATSISPS 237


>gi|227499278|ref|ZP_03929390.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
 gi|227218629|gb|EEI83863.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
          Length = 1358

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL    DRI EIGA +++D  K    +   + P       +  ++ GIT++
Sbjct: 342 FVVFDLETTGLSRYRDRITEIGACKVIDG-KICEIYNELVNPE-MLIPEKITEITGITNQ 399

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P    +   F +F   Q +  +  N  FDVGF+     R+  D       +DTL 
Sbjct: 400 MVESCPKIEEVLPGFLEFC--QGSILVGQNTDFDVGFVRENCTRLGLDF--NPLYLDTLP 455

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +AR       +  L+ + ++  I   +   H A  D+   + ++IKM
Sbjct: 456 MARALFADMKKFSLDKIARKLEIPAFNH--HRASDDARATAQIFIKM 500


>gi|255975216|ref|ZP_05425802.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|255968088|gb|EET98710.1| DNA polymerase III [Enterococcus faecalis T2]
          Length = 1439

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 407 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 464

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 465 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 521

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 522 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 579

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 580 NHDMHFHDDLNRHIGEGDSY-------KRARP 604


>gi|163791589|ref|ZP_02185990.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carnobacterium sp. AT7]
 gi|159873138|gb|EDP67241.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carnobacterium sp. AT7]
          Length = 1395

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 11/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  + IIE+ AV++   +    +F+ F+ P G   S   + 
Sbjct: 419 IELTDATYVVFDVETTGLSAVYNSIIELSAVKMHKGNII-ESFEQFIDP-GHPLSQTTIN 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   + + F +F    ++  +AHNA FD+GF+N    + N  P   +
Sbjct: 477 LTGITDEMVQGSKSEEEVLTLFKEFAG--DSILVAHNASFDMGFLNTSNAKHNI-PDAEN 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVG 177
            +IDTL ++R  HP    + LN+L K+YG+ +     H A+ D+        V++K    
Sbjct: 534 PVIDTLELSRFLHPQFKSHRLNTLAKKYGVNLEQH--HRAIFDAETTGHLCWVFLKEARE 591

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNI 203
              I+F  + NE     +  K     
Sbjct: 592 EHDIHFQDQLNEHTGEGDAYKRARPF 617


>gi|257419836|ref|ZP_05596830.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|257161664|gb|EEU91624.1| DNA polymerase III [Enterococcus faecalis T11]
          Length = 1439

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 407 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 464

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 465 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 521

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 522 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 579

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 580 NHDMHFHDDLNRHIGEGDSY-------KRARP 604


>gi|257090543|ref|ZP_05584904.1| DNA polymerase III polC [Enterococcus faecalis CH188]
 gi|256999355|gb|EEU85875.1| DNA polymerase III polC [Enterococcus faecalis CH188]
          Length = 1439

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 407 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 464

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 465 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 521

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 522 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 579

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 580 NHDMHFHDDLNRHIGEGDSY-------KRARP 604


>gi|307271493|ref|ZP_07552765.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
 gi|306511765|gb|EFM80763.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
          Length = 1451

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616


>gi|293383603|ref|ZP_06629513.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|293387284|ref|ZP_06631841.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|312906153|ref|ZP_07765165.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|312909498|ref|ZP_07768353.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis DAPTO 516]
 gi|291079115|gb|EFE16479.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|291083321|gb|EFE20284.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|310627799|gb|EFQ11082.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|311290171|gb|EFQ68727.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis DAPTO 516]
          Length = 1451

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616


>gi|229545206|ref|ZP_04433931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300860665|ref|ZP_07106752.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis TUSoD Ef11]
 gi|229309751|gb|EEN75738.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300849704|gb|EFK77454.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis TUSoD Ef11]
 gi|315035641|gb|EFT47573.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0027]
          Length = 1451

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616


>gi|315164832|gb|EFU08849.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1302]
          Length = 1451

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616


>gi|315025440|gb|EFT37372.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2137]
          Length = 1451

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616


>gi|312899805|ref|ZP_07759124.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
 gi|311293055|gb|EFQ71611.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
          Length = 1451

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616


>gi|307287733|ref|ZP_07567776.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|306501471|gb|EFM70774.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|315032873|gb|EFT44805.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0017]
          Length = 1451

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616


>gi|229549448|ref|ZP_04438173.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256853720|ref|ZP_05559085.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257421977|ref|ZP_05598967.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294779462|ref|ZP_06744860.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis PC1.1]
 gi|307270863|ref|ZP_07552150.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|307277206|ref|ZP_07558310.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|307291051|ref|ZP_07570937.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|312953417|ref|ZP_07772257.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|229305685|gb|EEN71681.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256710663|gb|EEU25706.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257163801|gb|EEU93761.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294453468|gb|EFG21872.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis PC1.1]
 gi|306497900|gb|EFM67431.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|306506136|gb|EFM75302.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|306512776|gb|EFM81421.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|310628626|gb|EFQ11909.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|315030983|gb|EFT42915.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4000]
 gi|315146013|gb|EFT90029.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2141]
 gi|315146659|gb|EFT90675.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4244]
 gi|315152085|gb|EFT96101.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0031]
 gi|315155311|gb|EFT99327.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0043]
 gi|315159111|gb|EFU03128.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0312]
 gi|315161731|gb|EFU05748.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0645]
 gi|315166431|gb|EFU10448.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1341]
 gi|315173645|gb|EFU17662.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1346]
 gi|323481337|gb|ADX80776.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis 62]
 gi|327535664|gb|AEA94498.1| DNA polymerase III PolC [Enterococcus faecalis OG1RF]
 gi|329569948|gb|EGG51703.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467]
          Length = 1451

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616


>gi|21314372|gb|AAM46912.1|AF508325_1 DNA polymerase III C [Enterococcus faecalis]
          Length = 1439

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 407 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 464

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 465 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 521

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 522 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 579

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 580 NHDMHFHDDLNRHIGEGDSY-------KRARP 604


>gi|315150171|gb|EFT94187.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0012]
          Length = 1451

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616


>gi|296269280|ref|YP_003651912.1| DNA polymerase III subunit epsilon [Thermobispora bispora DSM
           43833]
 gi|296092067|gb|ADG88019.1| DNA polymerase III, epsilon subunit [Thermobispora bispora DSM
           43833]
          Length = 574

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 89/227 (39%), Gaps = 27/227 (11%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              +++  +VFD+ETTG     D I EIGAV+ +   +    F   + P GR   P    
Sbjct: 13  TPLHEVTFVVFDLETTGGSPAEDAITEIGAVK-VCGGQVRGEFATLIDP-GRPIPPFISV 70

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +   P    +   F +F   + A  +AHNA FD+GF+ A        P   +
Sbjct: 71  LTGITDAMVVAAPKLPQVLPAFLEFI--RGATLVAHNAPFDLGFLRAACAEYGYPP-PAN 127

Query: 122 RIIDTLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            ++DT  +ARR           L +L + +    +    H AL D+    DV   ++   
Sbjct: 128 PVVDTADLARRMLTRDETPDCKLATLARYF--RSATEPCHRALADARATVDVLHGLLERA 185

Query: 179 SQINFGFKTNED---------------RFFKEEKKTVPNISLLKRDK 210
                G  T E+               R   E     P + + +  K
Sbjct: 186 G--ALGVHTLEELRAFNRMPTPEQRRKRHLAEGVPAAPGVYVFEDAK 230


>gi|228938753|ref|ZP_04101356.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228971635|ref|ZP_04132257.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228978244|ref|ZP_04138621.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis Bt407]
 gi|228781261|gb|EEM29462.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis Bt407]
 gi|228788048|gb|EEM36005.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228820928|gb|EEM66950.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326939259|gb|AEA15155.1| ATP-dependent helicase DinG [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 934

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|315170319|gb|EFU14336.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1342]
          Length = 1451

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616


>gi|312903703|ref|ZP_07762877.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|310632895|gb|EFQ16178.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|315578694|gb|EFU90885.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0630]
          Length = 1451

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616


>gi|308273149|emb|CBX29752.1| hypothetical protein N47_F14470 [uncultured Desulfobacterium sp.]
          Length = 182

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 99/177 (55%), Gaps = 9/177 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +  N  + ++FD+ETTG + +   RIIEIG V + + +  +  F+  +   G+  S +A 
Sbjct: 10  MSSNSDKYVIFDVETTGFNPQHGARIIEIGVVHIENGNIISE-FKSLINC-GKAVSKQAQ 67

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K++GIT+E L  +P+   +F +F  F ++  +  +AHNA FD+ F+  EL R+    +  
Sbjct: 68  KVNGITNEMLSGEPTPEEVFPDFLKFISK--STLVAHNAVFDISFLRYELSRLGF--VLS 123

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITIS-HRSKHGALLDSHLLSDVYIKMM 175
           +  + TL+I+R+  P    + L ++ K   + +  +   H AL D+ L + ++++MM
Sbjct: 124 NDYLCTLNISRKIFPDLENHKLLTVAKHILVNLPKNLHLHRALDDARLTAMIWMEMM 180


>gi|307285835|ref|ZP_07565969.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
 gi|306502596|gb|EFM71863.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
          Length = 1451

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616


>gi|29376875|ref|NP_816029.1| DNA polymerase III PolC [Enterococcus faecalis V583]
 gi|227519898|ref|ZP_03949947.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227553915|ref|ZP_03983962.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|29344340|gb|AAO82099.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis V583]
 gi|227072692|gb|EEI10655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227176901|gb|EEI57873.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|315574385|gb|EFU86576.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309B]
 gi|315580141|gb|EFU92332.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309A]
          Length = 1451

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +    TF+ F+ P G   S   + 
Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   +
Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179
            +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +     
Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +  F  + +R   E           KR +P
Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616


>gi|291530449|emb|CBK96034.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium
           siraeum 70/3]
          Length = 1605

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/169 (36%), Positives = 90/169 (53%), Gaps = 11/169 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTGL   N+RI EIGAV+L +    +R F  F+ P          +L GITD+
Sbjct: 591 IIVFDIETTGLHPANERITEIGAVKLRNMEIVDR-FSTFVNP-MMPIPSNITELTGITDD 648

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+     S+F  F    N+   AHNAKFDV FI +   R+ K   +P  ++DTLS
Sbjct: 649 MVADAPTEDVAVSDFMAFCG--NSPVCAHNAKFDVSFIRSAATRMGKSFDNP--VVDTLS 704

Query: 129 IARRKHPS-SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMM 175
           IA+          L+++ K + +    H   H A+ D+ +L  +Y+ ++
Sbjct: 705 IAKAALKGIKNYKLDTIAKYFKLGDFDH---HRAVADAEMLCMIYMHIV 750


>gi|163815213|ref|ZP_02206590.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759]
 gi|158449408|gb|EDP26403.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759]
          Length = 1623

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTGL  K+++IIEIGAV++ D  +   TF  F+ P G     +  +L  I D+
Sbjct: 567 YVVFDIETTGLSKKHNKIIEIGAVKVKDG-EVVDTFSEFINP-GVPIPYQIEQLTSINDD 624

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P +  I   F +F  +     +AHNA FD GF+    + +       + ++DT++
Sbjct: 625 MVKDAPMYDVIVPRFVEFCGDD--IVVAHNASFDTGFVKKNAEELGLRF--DNTVLDTMT 680

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++    P   +  L+ +CK   +  +H   H A+ D+   S V+ K++
Sbjct: 681 LSHILLPELGKFTLDRVCKELKVVNAHH--HRAIDDAEATSKVFFKLL 726


>gi|237756693|ref|ZP_04585197.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691145|gb|EEP60249.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 205

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 9/179 (5%)

Query: 1   MIRK--NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           MI     +    V D+ETTGL+ K   IIEI A++ ++ +     F   + P+       
Sbjct: 1   MINLTIEEATFTVVDLETTGLNPKTSEIIEIAAIK-VEGNVITEKFHTLVKPSIGFIPEH 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             KL GIT+  + DKP    +F  F +F   +N+  IAHNAKFD+ F+N    ++    L
Sbjct: 60  ITKLTGITNPLVIDKPKIEQVFPHFLEF--TKNSIIIAHNAKFDISFLNEASFQLTGK-L 116

Query: 119 DPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             + +I TL +A R  P  ++  L +L   + I      KH AL D+ +  +++ K + 
Sbjct: 117 IQNPVICTLVLANRLFPDLKSKSLTNLAYHFNIPY--HRKHRALADAEVTYELFKKFVE 173


>gi|291484662|dbj|BAI85737.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. natto BEST195]
          Length = 931

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 92/182 (50%), Gaps = 9/182 (4%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN +       +L
Sbjct: 1   MNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPAFIEQL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI+++ ++++  F ++  E +   +   A ++AHN  FD+GF+  EL +     L    
Sbjct: 59  TGISNQMVENEQPFEAVAEEVFQLLD--GAYFVAHNIHFDLGFVKYELHKAGFQ-LPDCE 115

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++DT+ ++R   P      L  L +   + + H   H A  D+ +   ++++++    Q+
Sbjct: 116 VLDTVELSRIVFPGFEGYKLTELSEE--LQLRHDQPHRADSDAEVTGLIFLEILEKLRQL 173

Query: 182 NF 183
            +
Sbjct: 174 PY 175


>gi|323493701|ref|ZP_08098821.1| DNA polymerase III, alpha subunit [Vibrio brasiliensis LMG 20546]
 gi|323312041|gb|EGA65185.1| DNA polymerase III, alpha subunit [Vibrio brasiliensis LMG 20546]
          Length = 204

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/186 (33%), Positives = 89/186 (47%), Gaps = 11/186 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   N    IV D ETTGL     DR IEIGAV+L++  +   TFQ  + P G + S   
Sbjct: 1   MPTANS--VIVLDFETTGLSPNMGDRAIEIGAVKLING-EVVDTFQQLMNP-GFRVSSFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+  L + PS   + S+F  F  + N   +AHNA FD  F++AE  RINKD L 
Sbjct: 57  EGYTGITNAMLANAPSCEEVMSQFHSFIADDN--LVAHNASFDKRFLDAEFDRINKDYLG 114

Query: 120 PSRIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 +L ++RR    +  + L  L +   I       H AL DS + + +++ M+   
Sbjct: 115 DFA--CSLLVSRRLNQDAPSHKLGDLVRYKQIDNDG-VFHRALADSQMTAKLWLLMLEDI 171

Query: 179 SQINFG 184
            Q    
Sbjct: 172 EQRGIS 177


>gi|312793079|ref|YP_004026002.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180219|gb|ADQ40389.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 1402

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG DS+ DRIIEIGAV++ +   T+R F  F+ P G K      +L GI  +
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITDR-FSTFVDPEG-KIPVRISELTGIYQD 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P       EF  F    ++  +AHNA+FD+GF+    Q      +     IDTL 
Sbjct: 448 MVDKAPKLIDAILEFERF--ASSSVLVAHNAQFDIGFLKKAYQECGI--IFDYTYIDTLE 503

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++RR     S   LN + +   + + H   H A  D+   + ++I ++       +
Sbjct: 504 LSRRLLTDLSSYKLNKVAEFLNVELRHH--HRADSDAETTAGIFISLLERLKARGY 557


>gi|228990657|ref|ZP_04150622.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           pseudomycoides DSM 12442]
 gi|228769183|gb|EEM17781.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           pseudomycoides DSM 12442]
          Length = 930

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  DRI +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDRITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     ++    ID
Sbjct: 62  DENLVKQAPLFCDVAPMVAELL--QGAYFVAHNVHFDWNFLKEELKQAGYGEVN-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           T+ +A+   P++    L  L K++   + H   H A  D+ + ++++++ +    ++  
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALVTAELFLQFLNQLEKLPL 175


>gi|15896683|ref|NP_350032.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
           824]
 gi|15026532|gb|AAK81372.1|AE007841_7 DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
           824]
 gi|325510847|gb|ADZ22483.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum EA
           2018]
          Length = 1452

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 11/183 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG   K ++I EIG ++  +    ++ F +F+ P  +      +++  ITD+
Sbjct: 428 YCVLDLETTGFSPKTEKITEIGIMKYENGKVIDK-FSLFVNPE-KPIPARVVEVTNITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+  +   +F +  +F   + +  +AHNA FD+GF+    + +  +       +DTLS
Sbjct: 486 MVKNAETIDKVFPKMLEFI--KGSVLVAHNASFDIGFLKHNAKVLGYEF--DFTYLDTLS 541

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P  +   L  + K  GI +     H AL D      V+  M+    +   G KT
Sbjct: 542 LAQAVFPQYKSYKLGRIAKNLGIKVE--VAHRALDDVDTTVKVFKVMLEILKER--GAKT 597

Query: 188 NED 190
            ED
Sbjct: 598 LED 600


>gi|321311709|ref|YP_004203996.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis BSn5]
 gi|320017983|gb|ADV92969.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis BSn5]
          Length = 931

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 92/182 (50%), Gaps = 9/182 (4%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN +       +L
Sbjct: 1   MNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPAFIEQL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI+++ ++++  F ++  E +   +   A ++AHN  FD+GF+  EL +     L    
Sbjct: 59  TGISNQMVENEQPFEAVAEEVFQLLD--GAYFVAHNIHFDLGFVKYELHKAGFQ-LPDCE 115

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++DT+ ++R   P      L  L +   + + H   H A  D+ +   ++++++    Q+
Sbjct: 116 VLDTVELSRIVFPGFEGYKLTELSEE--LQLRHDQPHRADSDAEVTGLIFLEILEKLRQL 173

Query: 182 NF 183
            +
Sbjct: 174 PY 175


>gi|320332653|ref|YP_004169364.1| DNA polymerase III subunit epsilon [Deinococcus maricopensis DSM
           21211]
 gi|319753942|gb|ADV65699.1| DNA polymerase III, epsilon subunit [Deinococcus maricopensis DSM
           21211]
          Length = 174

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 6/172 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGI 65
           M  +VFD+ETTGL  + D I+EIGA+ + +     + TF   + P  R       ++HGI
Sbjct: 1   MEYVVFDLETTGLSPERDAIVEIGAIRIRNGEVLEDDTFHTLVNPE-RDIPWYVSRVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +   P  +     F  +        +AHNA FD GFI A   R   +   P R I 
Sbjct: 60  RNAHVASAPRITEALPAFLQYAGT--TPVVAHNAAFDTGFIRAAAARQGLEW-RPQREIC 116

Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           TL ++RR  P  + + L++L +R G+    R  H A  D+ L +  +  ++ 
Sbjct: 117 TLQLSRRAFPREKSHKLDALAQRLGLLQEARGLHSAHADARLTAHAFAHLLR 168


>gi|188997343|ref|YP_001931594.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932410|gb|ACD67040.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 205

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 9/178 (5%)

Query: 1   MIRK--NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           MI     +    V D+ETTGL+ K   IIEI A++ ++ S     F   + P+       
Sbjct: 1   MINLTIEEATFTVVDLETTGLNPKTSEIIEIAAIK-VEGSVITEKFHTLVKPSIGFIPEH 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             KL GIT+  + DKP    +F  F +F   +N+  IAHNAKFD+ F+N    ++    L
Sbjct: 60  ITKLTGITNPLVIDKPKIEQVFPHFLEF--TKNSIIIAHNAKFDISFLNEASLQLTGK-L 116

Query: 119 DPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             + +I TL +A R  P  ++  L +L   + I      KH AL D+ +  +++ K +
Sbjct: 117 IQNPVICTLVLANRLFPDLKSKSLTNLAYHFNIPY--HRKHRALADAEVTYELFKKFV 172


>gi|228920352|ref|ZP_04083698.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228839274|gb|EEM84569.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 934

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|228952021|ref|ZP_04114116.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228957917|ref|ZP_04119657.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228801833|gb|EEM48710.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228807553|gb|EEM54077.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 934

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|229149839|ref|ZP_04278067.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1550]
 gi|228633520|gb|EEK90121.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1550]
          Length = 934

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHNQPHRADSDALATAELFLQFL 167


>gi|16079297|ref|NP_390121.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310156|ref|ZP_03592003.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. 168]
 gi|221314478|ref|ZP_03596283.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221319400|ref|ZP_03600694.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221323676|ref|ZP_03604970.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. SMY]
 gi|1706437|sp|P54394|DING_BACSU RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|1146243|gb|AAB38451.1| 22.4% identity with Escherichia coli DNA-damage inducible protein
           ...; putative [Bacillus subtilis subsp. subtilis str.
           168]
 gi|2634658|emb|CAB14156.1| damage inducible ATP-dependent helicase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 931

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 92/182 (50%), Gaps = 9/182 (4%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN +       +L
Sbjct: 1   MNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPAFIEQL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI+++ ++++  F ++  E +   +   A ++AHN  FD+GF+  EL +     L    
Sbjct: 59  TGISNQMVENEQPFEAVAEEVFQLLD--GAYFVAHNIHFDLGFVKYELHKAGFQ-LPDCE 115

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++DT+ ++R   P      L  L +   + + H   H A  D+ +   ++++++    Q+
Sbjct: 116 VLDTVELSRIVFPGFEGYKLTELSEE--LQLRHDQPHRADSDAEVTGLIFLEILEKLRQL 173

Query: 182 NF 183
            +
Sbjct: 174 PY 175


>gi|288904428|ref|YP_003429649.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus
           UCN34]
 gi|306830461|ref|ZP_07463631.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977425|ref|YP_004287141.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288731153|emb|CBI12701.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus
           UCN34]
 gi|304427486|gb|EFM30588.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177353|emb|CBZ47397.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 1464

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  N+   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 419 IELNEATYVVFDVETTGLSAVNNELIQIAASKMYKGNIVEQ-FDEFINP-GHHLSAFTTE 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +++      +   F DF   Q+   +AHNA FDVGF+NA  +R    P+   
Sbjct: 477 LTGITDNHVRNAKPIEEVLQMFQDFC--QDTVLVAHNATFDVGFMNANYERHGM-PIITQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     + 
Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLL 582


>gi|300856235|ref|YP_003781219.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
 gi|300436350|gb|ADK16117.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
          Length = 1449

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 9/207 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     ++I EIG +++ D    + TF  F+ P  +      +++  ITD+
Sbjct: 426 YCVLDLETTGFSPVTEKITEIGIMKIKDGKVID-TFSTFVNPE-KPIPLRVVEVTNITDD 483

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++  +   +F +  DF   +++  +AHNA+FDVGF+    + +  D       +DTLS
Sbjct: 484 MVRNAETIEQVFPKMLDFI--KDSVLVAHNAEFDVGFLKHNAKILGCDF--DFTYVDTLS 539

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P  +   L  + K  GI +     H AL D      V+  M+    +       
Sbjct: 540 LAQEVFPDFKTYKLGRIAKNLGIKVE--VAHRALDDVATTVKVFNVMLEKLKERGAENLK 597

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFT 214
           + D + ++E         LK    +  
Sbjct: 598 DIDIYGRDEAAKKEEYKKLKTYHAIIL 624


>gi|206970727|ref|ZP_03231679.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH1134]
 gi|229078824|ref|ZP_04211377.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock4-2]
 gi|229178049|ref|ZP_04305421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           172560W]
 gi|206734363|gb|EDZ51533.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH1134]
 gi|228605537|gb|EEK62986.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           172560W]
 gi|228704506|gb|EEL56939.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock4-2]
          Length = 934

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|262202943|ref|YP_003274151.1| DNA polymerase III subunit epsilon [Gordonia bronchialis DSM 43247]
 gi|262086290|gb|ACY22258.1| DNA polymerase III, epsilon subunit [Gordonia bronchialis DSM
           43247]
          Length = 595

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 10/170 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG D   DRI EIGAV++         F   + P  R   P+ + L GIT   
Sbjct: 39  VVVDLETTGSDPAGDRITEIGAVKIRGGEVLGE-FATLVDPE-RSIPPQIVTLTGITHAM 96

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P    +   F +F   + +  +AHNA+FD+GF+    QR++ D   P   + T+++
Sbjct: 97  VSAAPRIEEVLPAFIEF--ARGSILVAHNARFDMGFLRRNAQRLHLDFPFP-LSLCTVTM 153

Query: 130 ARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ARR           L++L   + +++  R  H AL D+    +V+  ++ 
Sbjct: 154 ARRILHREEAPTVRLSALADLFDVSV--RPTHRALDDARATVEVFHHLLE 201


>gi|160880751|ref|YP_001559719.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans
           ISDg]
 gi|160429417|gb|ABX42980.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans
           ISDg]
          Length = 1527

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 11/188 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG  S  D+IIEIGAV+ + +      F  F+ P          KL  ITDE 
Sbjct: 498 VVFDIETTGFSSVKDKIIEIGAVK-IQHGTIVDRFSTFINPE-VPIPYHIQKLTSITDEM 555

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +    +   I  EF  F   +    +AHNA FD+GFI  + + +N         +DT+ +
Sbjct: 556 VIGSRTIEEILPEFLSFC--EGCYLVAHNASFDIGFITKKAEFLNIPL--TVTSVDTVGL 611

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           AR       N  L+++ K   I++ +   H A+ D+   +++Y+K +    +   G +T 
Sbjct: 612 ARVLLNHLNNFKLDTVAKALSISLENH--HRAVDDAGCTAEIYLKFLEMLRER--GIETL 667

Query: 189 EDRFFKEE 196
                 EE
Sbjct: 668 AQINRAEE 675


>gi|229109097|ref|ZP_04238697.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-15]
 gi|228674375|gb|EEL29619.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-15]
          Length = 934

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL+++    +     ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQVGYTEIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|229126955|ref|ZP_04255966.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-Cer4]
 gi|228656555|gb|EEL12382.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-Cer4]
          Length = 934

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|229144240|ref|ZP_04272654.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST24]
 gi|228639248|gb|EEK95664.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST24]
          Length = 934

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|37677155|ref|NP_937551.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016]
 gi|320159243|ref|YP_004191621.1| DNA polymerase III subunit alpha [Vibrio vulnificus MO6-24/O]
 gi|37201700|dbj|BAC97521.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016]
 gi|319934555|gb|ADV89418.1| DNA polymerase III alpha subunit [Vibrio vulnificus MO6-24/O]
          Length = 204

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 11/178 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M + N    +V D ETTGL     DR IEIGAV+L++  +   TFQ  + P G + S   
Sbjct: 1   MPQANS--VVVLDFETTGLSPNLGDRAIEIGAVKLVNG-EVVETFQQLMNP-GFRVSSFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+  L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RIN D   
Sbjct: 57  ESYTGITNNMLRSAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCD--Y 112

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                 +L +ARR       + L  L +   I       H AL D+ + + +++ M+ 
Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDG-VFHRALADAQMTAKLWLLMVE 169


>gi|152975065|ref|YP_001374582.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023817|gb|ABS21587.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           cytotoxicus NVH 391-98]
          Length = 929

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV +++  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAV-VVEGGEILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     ID
Sbjct: 62  DENLVKQAPLFQDVAPMIVELL--QGASFVAHNVHFDWNFLKEELKQAGYADIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +    ++  
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFLTQIEKLPL 175


>gi|296502210|ref|YP_003663910.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171]
 gi|296323262|gb|ADH06190.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171]
          Length = 934

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|229189723|ref|ZP_04316737.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           10876]
 gi|228593772|gb|EEK51577.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           10876]
          Length = 934

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|229160592|ref|ZP_04288587.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           R309803]
 gi|228623002|gb|EEK79833.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           R309803]
          Length = 933

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|218896571|ref|YP_002444982.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus G9842]
 gi|218545327|gb|ACK97721.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus G9842]
          Length = 934

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|83590002|ref|YP_430011.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC
           39073]
 gi|83572916|gb|ABC19468.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC
           39073]
          Length = 921

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 12/170 (7%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
               +V D+ETTGLD   DRIIEI AV  L+     R FQ  + P GR   P   +L GI
Sbjct: 3   PQTYVVLDVETTGLDPARDRIIEIAAVR-LEGGNITRQFQTLVNP-GRPIPPAIERLTGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  +++ P    +     D F  ++A  + HN  FD+ F+N  L      PL     +D
Sbjct: 61  SDAMVREAPPLPEVLPGLLDLF--RDAIPVGHNGTFDLAFLNQALGHGWHSPL-----LD 113

Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           TL+++R   P  + + L+ + K   +T+     H AL D    + +   +
Sbjct: 114 TLALSRILFPCLASHRLDYMSKY--LTLEATGHHRALDDVLTTARLLENL 161


>gi|47566006|ref|ZP_00237044.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           cereus G9241]
 gi|47556923|gb|EAL15253.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           cereus G9241]
          Length = 934

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ + +   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELGQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|312621985|ref|YP_004023598.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202452|gb|ADQ45779.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 1402

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTG DS+ D+IIEIGAV++ +     R F  F+ P G K      +L GI  +
Sbjct: 390 FVVVDIETTGFDSQRDKIIEIGAVKIENGQIIER-FSTFVDPEG-KIPVRISELTGIYQD 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  +    EF  F     +  +AHNA+FD+GF+           +     IDTL 
Sbjct: 448 MVDKAPKLNDAILEFEKF--ASGSILVAHNAQFDIGFLKKAYHECGI--IFDYTYIDTLE 503

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++RR     S + LN + +   + + H   H A  D+   + ++  ++       +
Sbjct: 504 LSRRLLTDLSSHKLNKVAEFLNVELKHH--HRADSDAETTAGIFTSLLEKLKLRGY 557


>gi|218230901|ref|YP_002366323.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus B4264]
 gi|228907275|ref|ZP_04071134.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 200]
 gi|229069194|ref|ZP_04202485.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           F65185]
 gi|218158858|gb|ACK58850.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus B4264]
 gi|228713946|gb|EEL65830.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           F65185]
 gi|228852329|gb|EEM97124.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 200]
          Length = 934

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|228900222|ref|ZP_04064453.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 4222]
 gi|228859391|gb|EEN03820.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 4222]
          Length = 934

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|69246860|ref|ZP_00604152.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
           subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257882946|ref|ZP_05662599.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257889275|ref|ZP_05668928.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260560113|ref|ZP_05832291.1| DNA polymerase III [Enterococcus faecium C68]
 gi|293560202|ref|ZP_06676704.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1162]
 gi|314937503|ref|ZP_07844836.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|314942162|ref|ZP_07849016.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|314947498|ref|ZP_07850913.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
 gi|314951485|ref|ZP_07854534.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|314992575|ref|ZP_07857993.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|314995490|ref|ZP_07860590.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|68195041|gb|EAN09504.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
           subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257818604|gb|EEV45932.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257825635|gb|EEV52261.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260073948|gb|EEW62272.1| DNA polymerase III [Enterococcus faecium C68]
 gi|291605874|gb|EFF35306.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1162]
 gi|313590324|gb|EFR69169.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|313592867|gb|EFR71712.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|313596325|gb|EFR75170.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|313599085|gb|EFR77930.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|313643144|gb|EFS07724.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|313646048|gb|EFS10628.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
          Length = 1452

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P G   S   + L 
Sbjct: 422 LSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 479

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD  ++   S   +   F +F   ++   +AHNA FD+GF+N    R    P   + +
Sbjct: 480 GITDGMVRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPV 536

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179
           IDTL +AR  +P   R  L  L K++G+++     H A+ D+      + +++K  +   
Sbjct: 537 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 594

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203
            + +  + NE     +  K     
Sbjct: 595 NMLYHDQLNEHIGEGDSYKRARPF 618


>gi|254502460|ref|ZP_05114611.1| exonuclease family [Labrenzia alexandrii DFL-11]
 gi|222438531|gb|EEE45210.1| exonuclease family [Labrenzia alexandrii DFL-11]
          Length = 471

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 7/174 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
            +++   VFD ETTGL    D I++IGAV +++            + P GR   P + K+
Sbjct: 274 LSELSFTVFDTETTGLMPNKDDIVQIGAVRVVNGRMVPGERIDQLVNP-GRPIPPASSKV 332

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI+D  + D P      ++F +F  E  +  +AHNA FD+ F+    +    +   P  
Sbjct: 333 HGISDTMVADAPQPLEAVADFHEFARE--SVIVAHNAPFDLAFLQKYGKVAGLEW--PHP 388

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           I+DT+ ++     S+  + L++LC+R  I I    +H AL D+   ++   K++
Sbjct: 389 ILDTVLLSAVVFGSNEVHTLDALCERLCIDIRPEVRHTALGDAEATAEALCKLL 442


>gi|169629058|ref|YP_001702707.1| hypothetical protein MAB_1971c [Mycobacterium abscessus ATCC 19977]
 gi|169241025|emb|CAM62053.1| Probable DNA polymerase III epsilon subunit [Mycobacterium
           abscessus]
          Length = 600

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 14/209 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
                 +V D+ETTG  ++ND I EIGAV++             + P  R   P+ ++L 
Sbjct: 23  LRDTTFVVVDLETTGGSAENDAITEIGAVKVRGGEVLGE-LATLVDPQ-RSLPPQIVRLT 80

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   L D P  + +   F +F   + A  +AHNA FD+GF+ A  ++   D   P+ +
Sbjct: 81  GITSAMLVDAPPIAQVLPAFLEF--ARGAVLVAHNAGFDIGFLKAAARQCGIDWPQPA-V 137

Query: 124 IDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           + T+ +ARR        R  L +L +  G + +    H AL D+    DV   ++     
Sbjct: 138 LCTVRLARRVLSRDEAPRVSLGALAQLLGASTT--PNHRALDDARATVDVLHALISRVG- 194

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRD 209
            N G  T ++   +  +  VP+    KR 
Sbjct: 195 -NQGVGTMDE--LRRYRTQVPSALRGKRR 220


>gi|75760399|ref|ZP_00740443.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492110|gb|EAO55282.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 934

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|228932930|ref|ZP_04095795.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826733|gb|EEM72502.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 934

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESMVKQAPLFQDVAPMVGELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|297562082|ref|YP_003681056.1| DNA polymerase III subunit epsilon [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846530|gb|ADH68550.1| DNA polymerase III, epsilon subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 595

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 78/207 (37%), Gaps = 9/207 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG  +   RI E+GAV +         F   + P G         L GIT  
Sbjct: 26  FVVLDLETTGTSASGSRITEVGAVRVRGGEVVGE-FATLVNP-GTPIPANITLLTGITQS 83

Query: 69  FLKDKPSFSSIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +   P    +      F + + +   +AHNA FD GF+ A  +R   D      ++DTL
Sbjct: 84  MVASAPPMEEVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDW-PGYPVVDTL 142

Query: 128 SIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            +AR          + L +L   +G+ ++    H AL D+     V   ++     +   
Sbjct: 143 RLARAVLARGETRNHRLATLAAYFGVPVA--PNHRALEDARATVGVLHGLVERLRPMGVS 200

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKP 211
                    K   K   +   L  D P
Sbjct: 201 SVEELRAVTKPPTKAQRSRRHLAEDLP 227


>gi|269968192|ref|ZP_06182223.1| hypothetical protein VMC_36530 [Vibrio alginolyticus 40B]
 gi|269827190|gb|EEZ81493.1| hypothetical protein VMC_36530 [Vibrio alginolyticus 40B]
          Length = 204

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 94/204 (46%), Gaps = 13/204 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M + N    +V D ETTGL     DR IEIGAV+L++  +   +FQ  + P G + S   
Sbjct: 1   MPQANS--VVVLDFETTGLSPTLGDRAIEIGAVKLVNG-EVVDSFQQLMNP-GFRVSSFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
                IT+  L+  PS   + + F +F   +N   +AHNA FD  F++AEL+RIN     
Sbjct: 57  ENYTSITNNMLRSAPSCEEVMASFSEFIAGEN--LVAHNASFDKRFLDAELERINCG--S 112

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 +L +ARR       + L  L +   I       H AL D+ + + +++ M+ G 
Sbjct: 113 SGEFACSLLVARRLIQEAPSHKLGELVRYKNIDNDG-VFHRALADAQMTAKLWLLMVEGI 171

Query: 179 SQINFGFKTNEDRFFKEEKKTVPN 202
              N G +    +  +   KT   
Sbjct: 172 E--NSGVEKPSFQLMQTVSKTAKG 193


>gi|261207399|ref|ZP_05922085.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289566679|ref|ZP_06447096.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium D344SRF]
 gi|260078290|gb|EEW65995.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289161538|gb|EFD09421.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium D344SRF]
          Length = 1452

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P G   S   + L 
Sbjct: 422 LSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 479

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD  ++   S   +   F +F   ++   +AHNA FD+GF+N    R    P   + +
Sbjct: 480 GITDGMVRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARHGI-PEAANPV 536

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179
           IDTL +AR  +P   R  L  L K++G+++     H A+ D+      + +++K  +   
Sbjct: 537 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 594

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203
            + +  + NE     +  K     
Sbjct: 595 NMLYHDQLNEHIGEGDSYKRARPF 618


>gi|307243879|ref|ZP_07526004.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678]
 gi|306492701|gb|EFM64729.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678]
          Length = 172

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 11/169 (6%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+ETTGL     D IIEIG V  +   +  R +   + PNG        ++  IT+
Sbjct: 8   YVVVDLETTGLSPFNGDEIIEIG-VTEIKGDRIYRNYSRLVKPNGF-IPSVITEITNITN 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++D      +   F  F  ++    IAHNAKFD+GF+N  L+++N DP+D  + I T+
Sbjct: 66  DMVQDALPLEDVLPNFRKFIGDR--TIIAHNAKFDIGFLNYYLEKMNLDPID--KYICTM 121

Query: 128 SIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            + +  +++      L + C  YGI   +   H A  D+   + +++K+
Sbjct: 122 EMLKKNKEYKGKNKKLQTACDYYGILNEN--AHRADSDTLATAKLFMKI 168


>gi|320160945|ref|YP_004174169.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea
           thermophila UNI-1]
 gi|319994798|dbj|BAJ63569.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea
           thermophila UNI-1]
          Length = 934

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 13/178 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIETTGLD + D IIEIGAV   +       +   + P  +       +L GIT++
Sbjct: 7   YVAIDIETTGLDPEKDCIIEIGAVRFSNRR-VEAEWSSLIKPT-KNIPSFITQLTGITND 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+   +  +   F    N   + HN +FD+ F+  +        L  + +IDT  
Sbjct: 65  MVRKAPTIQDVIGDLAHFVG--NCPIVGHNIRFDLSFLQKQH------ILWNNHVIDTYE 116

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +A    P+ SR +L  L +  GI +   + H AL D+ +   ++I ++   S++    
Sbjct: 117 LASVLLPTASRYNLGVLAQSLGILLP--ATHRALDDARVTHALFIALLEKASELPVDL 172


>gi|145580424|pdb|2P1J|A Chain A, Crystal Structure Of A Polc-Type Dna Polymerase Iii
           Exonuclease Domain From Thermotoga Maritima
 gi|145580425|pdb|2P1J|B Chain B, Crystal Structure Of A Polc-Type Dna Polymerase Iii
           Exonuclease Domain From Thermotoga Maritima
          Length = 186

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 92/170 (54%), Gaps = 11/170 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGLD + D IIEIGAV+ +   +    +   + P+ R+ S ++ ++ GIT E
Sbjct: 14  FVVLDFETTGLDPQVDEIIEIGAVK-IQGGQIVDEYHTLIKPS-REISRKSSEITGITQE 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127
            L++K S   +  EF  F   +++  +AHNA FD  F+   +++ +  D   P   IDTL
Sbjct: 72  MLENKRSIEEVLPEFLGFL--EDSIIVAHNANFDYRFLRLWIKKVMGLDWERP--YIDTL 127

Query: 128 SIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMV 176
           ++A+         L+S+ ++ G+    H   H AL D+ + + V+++ + 
Sbjct: 128 ALAKSLLKLRSYSLDSVVEKLGLGPFRH---HRALDDARVTAQVFLRFVE 174


>gi|296333022|ref|ZP_06875479.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674874|ref|YP_003866546.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296149873|gb|EFG90765.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413118|gb|ADM38237.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 954

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 92/184 (50%), Gaps = 9/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           I  NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN +       
Sbjct: 22  ILMNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPAFIE 79

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GI+++ ++ +  F ++  E +   +   A ++AHN  FD+GF+  EL +     L  
Sbjct: 80  QLTGISNQMVEHEQPFEAVAEEVFHLLD--GAYFVAHNIHFDLGFVKYELHKAGFH-LPD 136

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++DT+ ++R   P      L  L +   + + H   H A  D+ +   ++++++    
Sbjct: 137 CEVLDTVELSRIVFPGFEGYKLTELSEE--LQLRHDQPHRADSDAEVTGLIFLEILEKLR 194

Query: 180 QINF 183
           Q+ +
Sbjct: 195 QLPY 198


>gi|228996755|ref|ZP_04156392.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
           Rock3-17]
 gi|228763074|gb|EEM11984.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
           Rock3-17]
          Length = 930

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  DRI +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDRITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A +IAHN  FD  F+  EL++     ++    ID
Sbjct: 62  DENLVKQAPLFCDVAPMVAELL--QGAYFIAHNVHFDWNFLKEELKQAGYGEVN-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           T+ +A+   P++    L  L K++   + H   H A  D+ + ++++++ +    ++  
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALVTAELFLQFLNQLEKLPL 175


>gi|319945650|ref|ZP_08019902.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
 gi|319748249|gb|EFW00491.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
          Length = 1463

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 418 LDLHEATYVVFDVETTGLSAIYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPISAFTTD 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +++      +  EF +F   Q+A  +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVRNAKPLKQVLEEFQEFC--QDAVLVAHNATFDVGFMNANYERHGL-PKITQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|269963944|ref|ZP_06178254.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831319|gb|EEZ85468.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 204

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 11/182 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M + N    +V D ETTGL     DR IEIGAV+++D  +   +FQ  + P G + SP  
Sbjct: 1   MPQANS--VVVLDFETTGLSPNMGDRAIEIGAVKIVDG-EVVDSFQQLMNP-GFRVSPFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+  L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RI+     
Sbjct: 57  EGYTGITNNMLRTAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERIDCG--Y 112

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 +L +ARR       + L  L +   I       H AL D+ + + +++ M+   
Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIENDG-VFHRALADAQVTAKLWLLMVEEL 171

Query: 179 SQ 180
            Q
Sbjct: 172 EQ 173


>gi|258539791|ref|YP_003174290.1| DNA polymerase III PolC [Lactobacillus rhamnosus Lc 705]
 gi|257151467|emb|CAR90439.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705]
          Length = 1444

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 17/219 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P G   S   + L  ITD+
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDP-GFPLSELTINLTHITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    S   +F  F  F +   A  + HN  FDVGF++   +R     +D + +IDTL 
Sbjct: 479 MVHGSKSEEEVFRLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 535

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---------MVGG 178
           ++R  HP  + + L++L K+Y +++ H   H A +D+     +   +         M   
Sbjct: 536 LSRMLHPERKNHKLDTLAKQYKVSLEHH--HRANVDAEATGYLLYALEKEAAKMYNMTKL 593

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
           +Q+N      E          +         K LF  ++
Sbjct: 594 NQLNDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVS 632


>gi|256112396|ref|ZP_05453317.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str.
           Ether]
          Length = 153

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 94/154 (61%), Gaps = 2/154 (1%)

Query: 90  QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
             A  +AHNA FD+GFINAEL R+++  +    I+DTL++ARRKHP   N L++LCKRYG
Sbjct: 1   DGARLVAHNAMFDLGFINAELARLDQAEITSEHIVDTLALARRKHPIGPNSLDALCKRYG 60

Query: 150 ITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT-VPNISLLKR 208
           I  SHR+ HGALLD+ +L++VYI+++ GG Q   G          + +      + L  R
Sbjct: 61  IDNSHRTLHGALLDAQILAEVYIELI-GGKQTALGLTMESGSAGGDSRGNGSAPVVLAAR 119

Query: 209 DKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
            +PL  RI+  E   H   ++ +G  A+W +Y+S
Sbjct: 120 PRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 153


>gi|229016898|ref|ZP_04173826.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1273]
 gi|229023104|ref|ZP_04179618.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1272]
 gi|228738250|gb|EEL88732.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1272]
 gi|228744459|gb|EEL94533.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1273]
          Length = 934

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +D
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEVH-CPKVD 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++I+ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFIQFL 167


>gi|157363106|ref|YP_001469873.1| DNA polymerase III PolC [Thermotoga lettingae TMO]
 gi|157313710|gb|ABV32809.1| DNA polymerase III, alpha subunit [Thermotoga lettingae TMO]
          Length = 1379

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 91/171 (53%), Gaps = 9/171 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  ++ R ++ DIETTGL      IIEIGAV + +   T+  F  F+ P+  K +   ++
Sbjct: 363 IEIDQERYVIVDIETTGLHPMFSEIIEIGAVAIENGQITDE-FHSFVKPS-EKLNAFTVQ 420

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
              ITD+ L ++PS   +  +F +F   ++   +AHNA FD  F+   +++  K   +P+
Sbjct: 421 FTKITDQMLANQPSIEEVLPKFMEFC--KDTTLVAHNANFDYRFLRYWIEKSLKLNWEPA 478

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVY 171
            +IDTL++A++    S  +L  L   + +   SH   H A  D+ + + ++
Sbjct: 479 -VIDTLALAKKLVRLSSYNLEKLASHFKLGPFSH---HRASEDAKVTAKIF 525


>gi|291557938|emb|CBL35055.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium
           siraeum V10Sc8a]
          Length = 1605

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 61/169 (36%), Positives = 90/169 (53%), Gaps = 11/169 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTGL   N+RI EIGAV+L +    +R F  F+ P          +L GITD+
Sbjct: 591 IIVFDIETTGLHPANERITEIGAVKLRNMEIVDR-FSTFVNP-MMPIPSNITELTGITDD 648

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+     S+F  F    N+   AHNAKFDV FI +   R+ K   +P  ++DTLS
Sbjct: 649 MVADAPTEDVAVSDFMAFCG--NSPVCAHNAKFDVSFIRSAAARMEKSFDNP--VVDTLS 704

Query: 129 IARRKHPS-SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMM 175
           IA+          L+++ K + +    H   H A+ D+ +L  +Y+ ++
Sbjct: 705 IAKAALKGIKNYKLDTIAKYFKLGDFDH---HRAVADAEMLCMIYMHIV 750


>gi|332670685|ref|YP_004453693.1| DNA polymerase III subunit epsilon [Cellulomonas fimi ATCC 484]
 gi|332339723|gb|AEE46306.1| DNA polymerase III, epsilon subunit [Cellulomonas fimi ATCC 484]
          Length = 620

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 16/221 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              + +  +V D+ETTG    +  I EIGAV++         FQ  + P G    P    
Sbjct: 36  TPLSDVTFVVVDLETTGGTPADCAITEIGAVKVRGGQVLGE-FQTLVDPGG-PVPPYIQV 93

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT   L   P   ++   F +F    +A  +AHNA FDVGF+ A   R    P   +
Sbjct: 94  LTGITTSMLVGAPRIETVLPSFLEFAG--DAVLVAHNAPFDVGFLKAAAARTGH-PWPGN 150

Query: 122 RIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           R++DT+ +ARR   +  +  + L++L   +  T++    H AL D+    DV   ++  G
Sbjct: 151 RVLDTVRLARRAVTRDEAPNHKLSTLAALFHATVT--PNHRALSDARATVDVLHALL--G 206

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                G    ED        T P  + ++R + L   +   
Sbjct: 207 RLGPLGVTHLEDLATA----TDPVPADVRRKRTLADGLPDA 243


>gi|255505426|ref|ZP_05346027.3| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
 gi|255267960|gb|EET61165.1| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
          Length = 1010

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG+ SK D +IEI AV++     T   F   + P GRK  P A +++GITD+
Sbjct: 25  YVVFDLETTGISSKYDEVIEISAVKVEAGQVTGE-FSTLVNP-GRKIPPAASRVNGITDK 82

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +     FS +  +F+ F    +   + HN   FD+ F+  + ++  +  +  +  +DTL
Sbjct: 83  MVAGALPFSEVLGDFFAFAG--DFVLVGHNINSFDMKFLYRDAKKYFRK-VPDNDYVDTL 139

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +AR   P  S + L  L + YGI  S +  H AL D H+   VY K+
Sbjct: 140 LLARAALPELSHHRLVDLAEHYGI--SAKGAHRALNDCHMNQKVYGKL 185


>gi|238060312|ref|ZP_04605021.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
 gi|237882123|gb|EEP70951.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
          Length = 604

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 101/255 (39%), Gaps = 25/255 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       I EIGAV++    +        + P G    P    L GIT  
Sbjct: 52  FVVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITQA 109

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P    +   F +F    +A  +AHNA +DVGF+ A   R      +P R++DT +
Sbjct: 110 MLVPAPPIEQVLPSFLEFVA--DAVLVAHNAPYDVGFLKAACARHGYRWPNP-RVLDTAA 166

Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +ARR           L +L   +    + R  H AL D+    DV   ++  +GG +++ 
Sbjct: 167 LARRVLGRDEVPNRKLGTLASYF--RTATRPTHRALDDAKATVDVLHGLIARLGGHRVDT 224

Query: 184 GFKTNE-----------DRFFKEEKKTVPNISLLKR--DKPLFTRITKEELDEHDKTIQT 230
             +  E            R   +    VP I + +   D+PL+   + +           
Sbjct: 225 VGEAIEFARAVTPTQRRKRHLADGLPKVPGIYIFRAADDRPLYVGTSGDIATRVRSYFTA 284

Query: 231 LGKNAIWDRYISSNQ 245
             K A     +++ +
Sbjct: 285 AEKRARMSEMLAAAE 299


>gi|227513179|ref|ZP_03943228.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
 gi|227083560|gb|EEI18872.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
          Length = 1438

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 11/205 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD ETTGL +  DR+IE+ AV++ + +  ++ F+ F+ P G   S +   
Sbjct: 412 IPLKDATYVVFDTETTGLSAIYDRVIELSAVKMKNSNVIDQ-FEEFIDP-GFHLSEQTTN 469

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +    S   +F  F DF   ++A  + HN  FD+GF+N    R    P   +
Sbjct: 470 LTSITDEMVHGSKSEEEVFKLFRDFC--EDAIVVGHNVTFDIGFMNTGYVRHGM-PEIKN 526

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVG 177
            IIDTL++AR  +P+ R   LN+L K++ + + H   H A+ D+        +++K    
Sbjct: 527 PIIDTLTLARFLYPNMRGYRLNTLAKKFDVNLEHH--HRAIYDAETTGHLNYLFLKDAED 584

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPN 202
              I +  + N+     +  K    
Sbjct: 585 RYGIVYHDELNDHMTENDAYKHARP 609


>gi|227510250|ref|ZP_03940299.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189902|gb|EEI69969.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 1438

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 11/205 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD ETTGL +  DR+IE+ AV++ + +  ++ F+ F+ P G   S +   
Sbjct: 412 IPLKDATYVVFDTETTGLSAIYDRVIELSAVKMKNSNVIDQ-FEEFIDP-GFHLSEQTTN 469

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +    S   +F  F DF   ++A  + HN  FD+GF+N    R    P   +
Sbjct: 470 LTSITDEMVHGSKSEEEVFKLFRDFC--EDAIVVGHNVTFDIGFMNTGYVRHGM-PEIKN 526

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVG 177
            IIDTL++AR  +P+ R   LN+L K++ + + H   H A+ D+        +++K    
Sbjct: 527 PIIDTLTLARFLYPNMRGYRLNTLAKKFDVNLEHH--HRAIYDAETTGHLNYLFLKDAED 584

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPN 202
              I +  + N+     +  K    
Sbjct: 585 RYGIVYHDELNDHMTENDAYKHARP 609


>gi|258511090|ref|YP_003184524.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477816|gb|ACV58135.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 240

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 93/237 (39%), Gaps = 15/237 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R ++ R +V D ETTGL     R++E+  VE+    +    +   + P G    PEA  
Sbjct: 1   MRLSEARFVVIDTETTGLPPDG-RVVELALVEVGLDREPQIVYSALVDP-GCPIPPEASA 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H ITD  +  KP    I+ +   +    +A  +AHNA+FD G +          P    
Sbjct: 59  VHHITDRDVAGKPRLMQIWPKVMGYIG--DAILVAHNAEFDRGML----------PETGR 106

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             I +  +A+       ++    L    GI +     H AL D+ + + V+ + +    +
Sbjct: 107 PWICSKRLAQHLWRDAPKHSNQVLRYWLGIDVEVGLPHRALGDAIVTAHVFQRELRAYLE 166

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
             +         F E    V  +   K        +  + LD   + +Q L  +  W
Sbjct: 167 AGYPDDVEALIAFAESPIEVQTMPFGKHKGMPLKDVPLDYLDRALRNMQDLSPDLRW 223


>gi|291459111|ref|ZP_06598501.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418365|gb|EFE92084.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 1517

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 9/175 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFDIETTG   + D+IIEIGAV+L +    +R   VF+ P          +L  I D  
Sbjct: 493 VVFDIETTGFHPQTDKIIEIGAVKLREGKICDR-MDVFVNPEI-PIPFRITQLTSIDDSM 550

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  + +   +  EF  F    +A  +AHNA FD GFI    +R+         ++DT+ +
Sbjct: 551 VIGERTIEELLPEFLSFCG--DAVIVAHNADFDTGFIRENARRLGLSYDPT--VVDTVGL 606

Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +R   P   R  L+++ K  GI++ +   H A+ D+   +++Y K +    +   
Sbjct: 607 SRLLLPKLNRFKLDTVAKELGISLLNH--HRAVDDAEATAEIYQKELSLLRERGV 659


>gi|282890058|ref|ZP_06298591.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500064|gb|EFB42350.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 231

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 18/219 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ + +D ETTG+ +  D +IE+   + +      RTF+  + P G    PEA  +H IT
Sbjct: 1   MKALYYDTETTGIKADRDYVIELAVYDPVGN----RTFERLINP-GVPIPPEATAIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIID 125
           DE + + PSF  I  EF +F +  +   IAHN  +FD+ F+  E +R N++ L P + +D
Sbjct: 56  DEMVANAPSFGEIIEEFKEFCSG-DVVLIAHNNDQFDIHFLRNEFKRSNQE-LPPWKFLD 113

Query: 126 TLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           TL  ARR ++   R+ L  L   YGI  +  + H AL D  +L  V+  M+         
Sbjct: 114 TLKWARRYRNDLPRHTLQFLRGIYGI--AENNAHRALDDVIVLHQVFSAML-------DD 164

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
               E      + K + ++   K       ++    +  
Sbjct: 165 LSIAEAYALMNQPKDIQHMPFGKHQGMPLKQVPASYIQW 203


>gi|288556130|ref|YP_003428065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus pseudofirmus OF4]
 gi|288547290|gb|ADC51173.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus pseudofirmus OF4]
          Length = 940

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D+ETTG   +K DRII+IGAV + +     R F  F+ P   +  P   +L GI 
Sbjct: 4   RFIVVDVETTGHSVAKGDRIIQIGAVVIENGEIIER-FASFVNPE-VEIPPFIEELTGIN 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++  P+F  +  E    F  +N  ++AHN  FD+ F+  + + I  +     +  DT
Sbjct: 62  QAMVEHAPTFKELAVELLPLF--ENVGFVAHNVPFDLSFLKNQFELIG-EKFPKMKCYDT 118

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           + ++R   P      L  L   + + +SH   H A  D+ + +++++ ++     +  
Sbjct: 119 VELSRMLLPKEESYKLGHLA--FSLGLSHDRPHQADSDAEVTAEIFLYLLNKLKGLPL 174


>gi|328470587|gb|EGF41498.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus 10329]
          Length = 204

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 88/179 (49%), Gaps = 11/179 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M + N    +V D ETTGL     DR IEIGAV+L+D  +   +FQ  + P G + S   
Sbjct: 1   MPQANS--VVVLDFETTGLSPTLGDRAIEIGAVKLVDG-EVVDSFQQLMNP-GFRVSSFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+  L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RIN     
Sbjct: 57  ENYTGITNNMLRIAPSCEEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCG--Y 112

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 +L +ARR       + L  L +   I       H AL D+ + + +++ M+ G
Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDG-IFHRALADAQMTAKLWLLMVEG 170


>gi|291280248|ref|YP_003497083.1| hypothetical protein DEFDS_1873 [Deferribacter desulfuricans SSM1]
 gi|290754950|dbj|BAI81327.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 200

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 13/189 (6%)

Query: 1   MIRKNKMR---KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT--NRTFQVFLCPNGRK 54
           M   N+++     V D ETTGL   K  R++EI AV L +      +R F   + P  + 
Sbjct: 1   MKMNNEVKSYKFTVVDTETTGLSPYKGARLVEIAAVRLDEGLNIRLDRGFSTLINPK-KP 59

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              +A K+H I+DE +KD P+   +   F  +   +N  ++AHNA FD  FI+   ++  
Sbjct: 60  IPFQAYKIHKISDEMVKDAPTIEEVLPHFSKYV--ENTVFVAHNAPFDFKFIDYFYKKTG 117

Query: 115 KDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVY 171
            +      +IDTL ++RR  P  +   L+SL + + I   I+   +H A+ D+   + ++
Sbjct: 118 MNC-PLIAVIDTLKLSRRIIPGLKSYSLDSLIQHFNIKLKINGSYRHRAIYDALHTAIIF 176

Query: 172 IKMMVGGSQ 180
            K++   SQ
Sbjct: 177 KKLIEIESQ 185


>gi|150020931|ref|YP_001306285.1| DNA polymerase III PolC [Thermosipho melanesiensis BI429]
 gi|149793452|gb|ABR30900.1| DNA polymerase III, alpha subunit [Thermosipho melanesiensis BI429]
          Length = 1362

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 59/172 (34%), Positives = 85/172 (49%), Gaps = 11/172 (6%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             + +   VFD+ETTG ++K D IIEIGAV+  D    N TF  F+ P  +  S    KL
Sbjct: 338 MLDDVTYTVFDLETTGTNAKFDEIIEIGAVKYRDGKVIN-TFSSFVKPT-KSISEFTQKL 395

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GITDE +KD  S   +F EF  F +      +AHNA FD GFI    +R+    LD   
Sbjct: 396 TGITDEMVKDAKSIEEVFPEFLKFID--GTVLVAHNADFDYGFIREVNRRLYNKELD-FA 452

Query: 123 IIDTLSIARRKHPS--SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVY 171
            +DTL +++           L  L + + +    H   H A  D+ + +D++
Sbjct: 453 YLDTLKLSKVLLRGKVKSFGLGKLVEYFKLGPFKH---HRAFEDASVTADLF 501


>gi|227524394|ref|ZP_03954443.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
 gi|227088625|gb|EEI23937.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
          Length = 1438

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 11/205 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD ETTGL +  DR+IE+ AV++ + +  ++ F+ F+ P G   S +   
Sbjct: 412 IPLKDATYVVFDTETTGLSAIYDRVIELSAVKMKNSNVIDQ-FEEFIDP-GFHLSEQTTN 469

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +    S   +F  F DF   ++A  + HN  FD+GF+N    R    P   +
Sbjct: 470 LTSITDEMVHGSKSEEEVFKLFRDFC--EDAIVVGHNVTFDIGFMNTGYVRHGM-PEIKN 526

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVG 177
            IIDTL++AR  +P+ R   LN+L K++ + + H   H A+ D+        +++K    
Sbjct: 527 PIIDTLTLARFLYPNMRGYRLNTLAKKFDVNLEHH--HRAIYDAETTGHLNYLFLKDAED 584

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPN 202
              I +  + N+     +  K    
Sbjct: 585 RYGIVYHDELNDHMTENDAYKHARP 609


>gi|312143668|ref|YP_003995114.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904319|gb|ADQ14760.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
          Length = 1401

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 8/169 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL+     IIEIGAV++    K    F+ F+  + +    +  ++ GI   
Sbjct: 388 FVVFDLETTGLNPSQHDIIEIGAVKIKAGEKIAE-FETFIDID-KNVPAKITEITGINTS 445

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P   +    F DF    +   +AHNA FD GF+   LQ++  +  +   ++DTL+
Sbjct: 446 MLTGAPKLKAAIERFIDFIG--DGVLVAHNADFDYGFLRTALQKLEINRKE-YTVLDTLA 502

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++R     S+N  LN+L + + + +     H AL D+   +++  K++ 
Sbjct: 503 LSRALIKDSKNYKLNTLAEYFSVELDDH--HRALADADATAEILKKLLA 549


>gi|315641197|ref|ZP_07896274.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
 gi|315482964|gb|EFU73483.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
          Length = 1445

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 11/199 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P G   S   + L GITDE
Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMHKGN-VEASFDEFIDP-GHPLSNTTINLTGITDE 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   S   +   F +F   + A  +AHNA FD+GF+N   ++    P   + +IDTL 
Sbjct: 483 MVRGSKSEEEVLRLFREF--SEGAVLVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLE 539

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGSQINFG 184
           +AR  +P   R  L  L K++G+++     H A+ D+      + +++K  +   ++   
Sbjct: 540 LARYLYPEFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMEHHKMFLH 597

Query: 185 FKTNEDRFFKEEKKTVPNI 203
              N     +   +     
Sbjct: 598 EDLNRHVGGENSYRAARPF 616


>gi|116872751|ref|YP_849532.1| DNA polymerase III PolC [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123466238|sp|A0AIC1|DPO3_LISW6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116741629|emb|CAK20753.1| DNA polymerase III [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 1444

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 11/192 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I        VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + 
Sbjct: 421 IGLQDATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTIN 478

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K       +   F ++  +     +AHNA FD+GFIN   +++  +  D +
Sbjct: 479 LTGITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAD-N 535

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DTL +AR  +P    + LN+L K++ I +     H A+ D+   + +  K++    +
Sbjct: 536 AVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKE 593

Query: 181 ---INFGFKTNE 189
              INF    N+
Sbjct: 594 MHDINFHDSLND 605


>gi|291544892|emb|CBL18001.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp.
           18P13]
          Length = 1444

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 10/170 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I+FD+ETTGL ++ DR+ EIGA+++ +      +F  ++ P  R   PE   L GI + 
Sbjct: 428 IIIFDVETTGLSAERDRLTEIGAIKVKNMR-VADSFHTYVNPE-RPIPPEITDLTGIHEG 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P  S    EF+ F   ++   +AHNA+FD  FI+A   R  +        ID+L 
Sbjct: 486 MVAEAPKASQALKEFFAFCG-EDPVLVAHNARFDTSFIDAAAGRAGQRYA--YAYIDSLV 542

Query: 129 IARRKHPS-SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMV 176
           + +   P  +++ LN + K   +    H   H A  D+ +L+ +Y++++ 
Sbjct: 543 LCQAMLPDLAKHKLNVVAKHLKLGKFDH---HRADNDAMMLAKIYLELVG 589


>gi|149001610|ref|ZP_01826583.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
 gi|147760068|gb|EDK67057.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
          Length = 1113

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|311030323|ref|ZP_07708413.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. m3-13]
          Length = 844

 Score =  165 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 9/178 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K R +V D+ETTG    KND+II++GAV + D     R F  F+ P      P   +L  
Sbjct: 2   KQRFVVLDLETTGNTPKKNDKIIQVGAVLIEDGEIVER-FASFVNPQCT-IPPFIEQLTN 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I  + +   P+F+ I     +    + +  +AHN  FD+ F+  EL+         +   
Sbjct: 60  INQDMVGRAPTFAQIAPMLCEML--KGSSLVAHNVPFDLSFLQHELKTSGHPTFSGNT-F 116

Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           DT+ +AR   P+ +   L  L   Y   ++H + H A  D+   + +++K++     +
Sbjct: 117 DTVELARILLPTQKSYKLTDLSIFY--ELNHDNPHRADSDAEATAIIFLKLLEKIKTL 172


>gi|221632241|ref|YP_002521462.1| DNA polymerase III subunit epsilon [Thermomicrobium roseum DSM
           5159]
 gi|221156344|gb|ACM05471.1| DNA polymerase III, epsilon subunit [Thermomicrobium roseum DSM
           5159]
          Length = 693

 Score =  165 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 66/215 (30%), Positives = 111/215 (51%), Gaps = 10/215 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGL     RIIEIGAV   D     R F V + P+ R+     ++L GI DE
Sbjct: 86  FVALDVETTGLRPARHRIIEIGAVRYEDGCCVER-FSVLVNPH-RRLPVYIVRLTGIRDE 143

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   PSF  + + F  F  E  +  I +N  FD+ F+NAEL+RI + PL P+  +D L 
Sbjct: 144 DLLTAPSFVDVAAAFRVFLGE--STVIGYNVGFDLDFLNAELRRIGQGPL-PNPALDVLP 200

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR     + R DL+++C+   I ++  ++H AL D+   + +Y+ ++    Q+  G+++
Sbjct: 201 LARALLTANGRYDLDAICR--SIGLARGTRHRALPDAEATAVLYLHLVERAEQV--GYRS 256

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
             D      ++T+    + +    L  R+  +  +
Sbjct: 257 PSDLQPAATRRTIVVEPVARGRAVLDQRLLADTPE 291


>gi|84385238|ref|ZP_00988270.1| DNA polymerase III, alpha subunit [Vibrio splendidus 12B01]
 gi|84379835|gb|EAP96686.1| DNA polymerase III, alpha subunit [Vibrio splendidus 12B01]
          Length = 207

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 98/204 (48%), Gaps = 10/204 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   +    IV D ETTGL     DR IEIGAV+L++  +   TFQ  + P G + S   
Sbjct: 1   MAPNSADSVIVLDFETTGLSPNMGDRAIEIGAVKLVNG-EVVDTFQQLMNP-GFRVSGFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GI++  L    S S +  EF DF   Q ++ +AHNA FD  F++AEL  I +D   
Sbjct: 59  ESYTGISNRMLSTAASCSEVMDEFADFI--QGSQLVAHNASFDKRFLDAELDFIGRDY-- 114

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +   ++ IARR    +  + L  L +   I     + H AL DS + + +++ +M+  
Sbjct: 115 TGKFACSMLIARRLIQDAPTHKLGDLVRFKNIDNDG-TFHRALADSEMTARLWL-LMIDE 172

Query: 179 SQINFGFKTNEDRFFKEEKKTVPN 202
            Q + G +    +  ++  KT   
Sbjct: 173 LQSDHGIQQPSFQLMQKISKTAKG 196


>gi|308174031|ref|YP_003920736.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606895|emb|CBI43266.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens
           DSM 7]
 gi|328552843|gb|AEB23335.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus amyloliquefaciens TA208]
 gi|328912360|gb|AEB63956.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens
           LL3]
          Length = 928

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 9/182 (4%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN +   P   +L
Sbjct: 1   MNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-QDIPPFIEQL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI+   ++++  F ++  E +   +   A ++AHN  FD+GF+  EL     + L    
Sbjct: 59  TGISTGMVENELPFEAVAEEIFHLLD--GAYFVAHNIHFDLGFVRHELSEAGYE-LTDCE 115

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++DT+ ++R   P      L  LC    I   H   H A  D+ +   +++ ++     +
Sbjct: 116 VLDTVELSRIVFPGFEGYKLGELCAELNIV--HDRPHRADSDAEVTGLIFLDILHKLKHL 173

Query: 182 NF 183
             
Sbjct: 174 PL 175


>gi|289423581|ref|ZP_06425382.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
 gi|289156083|gb|EFD04747.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
          Length = 174

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 11/172 (6%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K   IV D+ETTGLD  +   IIEIG  E+     T   +   + P G   S     L  
Sbjct: 7   KDEYIVVDLETTGLDPLQGHEIIEIGVTEIKKGDITLN-YSRLIKPKG-IISSFITNLTH 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I++E ++ + +   +  +F ++    ++  IAHNAKFD+ F+N  L+++  +P+     I
Sbjct: 65  ISNEMVEGEKTLEEVLPKFREYIG--DSVLIAHNAKFDIPFLNYYLEKMGLEPIKN--YI 120

Query: 125 DTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            TL + +  + +P  +  L++ C  YGI       H A  D+H  + +++K+
Sbjct: 121 CTLEMLKMNKMYPLKKKSLSAACDFYGIKNV--EAHRAYADTHATALLFLKI 170


>gi|154686487|ref|YP_001421648.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus amyloliquefaciens FZB42]
 gi|154352338|gb|ABS74417.1| DinG [Bacillus amyloliquefaciens FZB42]
          Length = 928

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 9/182 (4%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN     P   +L
Sbjct: 1   MNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPNQA-IPPFIEQL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI+   ++++  F ++  E +   +   A ++AHN  FD+GF+  EL     + L    
Sbjct: 59  TGISSGMVENELPFEAVAEEIFHLLD--GAYFVAHNIHFDLGFVRHELSEAGYE-LPDCE 115

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++DT+ ++R   P      L  LC    I   H   H A  D+ +   V++ ++     +
Sbjct: 116 VLDTVELSRIVFPGFEGYKLGELCAELNIV--HDRPHRADSDAEVTGLVFLDILHKLKHL 173

Query: 182 NF 183
             
Sbjct: 174 PL 175


>gi|307945225|ref|ZP_07660561.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium
           sp. TrichSKD4]
 gi|307771098|gb|EFO30323.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium
           sp. TrichSKD4]
          Length = 470

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 9/191 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
             VFD ETTGL    D I++IGAV +++            + P GR   P + K+HGITD
Sbjct: 278 FTVFDTETTGLMPNKDEIVQIGAVRVVNGKIVPGEVIDQLVDP-GRPIPPASTKVHGITD 336

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +K  P   +   +F  F   +++  +AHNA FD+ F++   +    +   P  I+DT+
Sbjct: 337 EMVKGAPDAVTSVQQFHTF--AKDSVIVAHNAPFDMAFLHRYGRESGLEWDHP--IMDTV 392

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            ++   + ++  + L++LC R G+TI    +H AL D+   ++V   ++     I+ G+K
Sbjct: 393 LLSAVVYGTTEIHTLDALCDRLGVTIPVELRHTALGDAQATAEVLCHLLPIL--ISKGYK 450

Query: 187 TNEDRFFKEEK 197
           T  D   +  K
Sbjct: 451 TFGDVLTQTRK 461


>gi|156975103|ref|YP_001446010.1| hypothetical protein VIBHAR_02830 [Vibrio harveyi ATCC BAA-1116]
 gi|156526697|gb|ABU71783.1| hypothetical protein VIBHAR_02830 [Vibrio harveyi ATCC BAA-1116]
          Length = 204

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 11/182 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M + N    +V D ETTGL     DR IEIGAV+++D  +   +FQ  + P G + S   
Sbjct: 1   MPQANS--VVVLDFETTGLSPNMGDRAIEIGAVKIVDG-EVVDSFQQLMNP-GFRVSSFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+  L+  P+   + + F +F   +N   IAHNA FD  F++AEL+RI      
Sbjct: 57  EGYTGITNNMLRTAPNCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERIGCG--Y 112

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 +L +ARR       + L  L +   I       H AL D+ + + +++ M+   
Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIENDG-VFHRALADAQVTAKLWLLMVEEL 171

Query: 179 SQ 180
            Q
Sbjct: 172 EQ 173


>gi|171778812|ref|ZP_02919874.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282458|gb|EDT47882.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 1464

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  N+   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 419 IELNEATFVVFDVETTGLSAVNNDLIQIAASKMYKGNIVEQ-FDEFINP-GHHLSAFTTE 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +++      +   F DF   Q+   +AHNA FDVGF+NA  +R    P+   
Sbjct: 477 LTGITDNHVRNAKPIEEVLQMFQDFC--QDTVLVAHNATFDVGFMNANYERHGM-PIITQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     + 
Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLL 582


>gi|77920206|ref|YP_358021.1| DNA polymerase III subunit [Pelobacter carbinolicus DSM 2380]
 gi|77546289|gb|ABA89851.1| DNA polymerase III subunit [Pelobacter carbinolicus DSM 2380]
          Length = 222

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 11/209 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+G+   + DR IEIGAV ++     +R FQ  + P  R  S       GI++ 
Sbjct: 20  VVLDFETSGMSPVQGDRAIEIGAVRIVGGQIADR-FQSLMNPGCR-ISSFIESFTGISNA 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P  + + + F DF    +A  +AHNA FD  F++AELQRI++          +L 
Sbjct: 78  MVQAAPPATQVMAAFHDFIG--DAPLVAHNASFDRRFLDAELQRIDRC--RRQEFACSLL 133

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR +P S  + L +L    G+  +    H AL D+ + + ++++M     Q  +GF  
Sbjct: 134 VARRVYPDSPNHKLATLVSYKGLP-TDGCFHRALADAEMTAHLWLRM-AADLQDAYGFSQ 191

Query: 188 NEDRFFKEEKKTVPN-ISLLKRDKPLFTR 215
                     +   N ++   R++ L  R
Sbjct: 192 VPFALMSALARQKKNRVAAFLRERALEMR 220


>gi|256825435|ref|YP_003149395.1| hypothetical protein Ksed_16150 [Kytococcus sedentarius DSM 20547]
 gi|256688828|gb|ACV06630.1| exonuclease, DNA polymerase III, epsilon subunit family [Kytococcus
           sedentarius DSM 20547]
          Length = 584

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 14/203 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  S +  I E GAV++         FQ  + P      P    L GIT  
Sbjct: 27  FVVFDLETTGTSSADSEITEFGAVKVRGGEVVGE-FQTLVRP-AAGIPPYIQVLTGITTA 84

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   PS   +   F +F    +A  +AHNA+FD  F+    +R  + P   + ++DT+ 
Sbjct: 85  MVSAAPSIEQVLPNFLEFVG--DAVLVAHNARFDTAFVRRACERTGR-PAPGNPVLDTVH 141

Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +AR+  P      + L++L   +    +    H AL D+    DV   ++     +  G 
Sbjct: 142 LARQLLPRPEVPNHKLSTLAAYFRAETT--PSHRALDDARATVDVLHGLIERVGPL--GV 197

Query: 186 KTNEDRFFKEEKKTVPNISLLKR 208
            + E+       + VP     KR
Sbjct: 198 HSLEELLA--YSRHVPEARRRKR 218


>gi|310830408|ref|YP_003965509.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2]
 gi|309249875|gb|ADO59441.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2]
          Length = 311

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 11/170 (6%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V DIETTG    K  RIIE+  V++ +    +  F   + P  +K  P+  +L GIT+
Sbjct: 26  YVVADIETTGFSPAKGGRIIEVAGVKIENGKIVDE-FNQLINPE-QKIYPKITELTGITN 83

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRIIDT 126
           E +  KP F  +  EF+ F    +A ++AHN  FD   ++    +++    +  +  I T
Sbjct: 84  EMVSGKPVFGQVLPEFYRFIG--DAVFVAHNKSFDWDRYLLHYFEKVGI--IADNASICT 139

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +A+   P+     L  +CK  G+ I++   H AL DS  L+ V+++ +
Sbjct: 140 KILAKMYRPNLPAYGLEDICKDAGVQITNH--HRALDDSIALAHVFLRYL 187


>gi|312135559|ref|YP_004002897.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis
           OL]
 gi|311775610|gb|ADQ05097.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis
           OL]
          Length = 1402

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG DS+ ++IIEIGAV++ +   T R F  F+ P G K      +L GI  +
Sbjct: 390 FVVVDVETTGFDSQKNKIIEIGAVKIENGQITER-FSTFVDPEG-KIPVRISELTGIYQD 447

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P       EF  F     +  +AHNA+FD+GF+    Q      +     IDTL 
Sbjct: 448 MVDKAPKLRDAILEFEKF--ASGSVLVAHNAQFDIGFLKKAYQECGI--IFDYTYIDTLE 503

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++RR     S + LN + +   + + H   H A  D+   + ++  +M       +
Sbjct: 504 LSRRLLTGLSSHKLNKVAEFLNVELRHH--HRADSDAETTAGIFTSLMERLKVRGY 557


>gi|304406903|ref|ZP_07388557.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
           curdlanolyticus YK9]
 gi|304343890|gb|EFM09730.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
           curdlanolyticus YK9]
          Length = 957

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 8/178 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  V D+ETTG  ++ D +I+IG V L +      TF  F+ P      P   +L GIT
Sbjct: 1   MKFAVLDLETTGHQAE-DEMIQIGIVMLDEELNVTDTFSSFVRP-ATDIPPFITQLTGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E + D PS   + ++        +A  +AHN  FD  F+N  L R    P    R +DT
Sbjct: 59  NEMVADAPSVEDVLTDVVKLLG--DAVLVAHNVGFDAHFMNRALDRCGYSPF-TGRRLDT 115

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           + + R  +P+     L ++ + +GI  +H  KH A  D+   + ++   +     +  
Sbjct: 116 IDLLRMLYPTLPSYQLGAVSEAFGI--THERKHQADSDAEATAMLFAHCVHKLRDLPL 171


>gi|257452473|ref|ZP_05617772.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|317059014|ref|ZP_07923499.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|313684690|gb|EFS21525.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
          Length = 1450

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 93/173 (53%), Gaps = 8/173 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             K   +V+D+ET G +S   +IIEIGAV++++    +R F   + P G+      + + 
Sbjct: 419 LEKASFVVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDR-FSQLVNP-GQSIPQNIVDVT 476

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            ITD  ++++P+   +  +F DF   + +  +AHNA FD+G++  + ++      +PS  
Sbjct: 477 NITDSMVQNEPNIEEVLPKFLDFI--EGSILVAHNADFDIGYLKQQCKQQGYSDFNPS-F 533

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IDTL +A+  +P  +   L  L K+ G+++ +   H A+ D     ++++  +
Sbjct: 534 IDTLQMAKDLYPELKQFGLGPLNKKLGLSLENH--HRAVDDCQATGNMFLIFL 584


>gi|328957406|ref|YP_004374792.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
 gi|328673730|gb|AEB29776.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
          Length = 1446

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 11/206 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  ++   +VFD+ETTGL +  + IIE+ AV++   +    +F+ F+ P G   S   + 
Sbjct: 419 IELSEAIYVVFDVETTGLSAVYNSIIELSAVKMHKGNII-ESFEQFIDP-GHPLSQTTIN 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +    S   + + F +F  +     +AHNA FD+GF+N    + N  P   +
Sbjct: 477 LTGITDEMVHGSKSEEEVLTLFKEFAGDH--ILVAHNASFDMGFLNTSNAKHNI-PDATN 533

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVG 177
            +IDTL ++R  HP  + + LN+L K+YGI +     H A+ DS        +++K    
Sbjct: 534 PVIDTLELSRFLHPQYKSHRLNTLAKKYGINLEQH--HRAIFDSETTGQLCWLFLKEAKE 591

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNI 203
             ++ +  + NE     +  K     
Sbjct: 592 EHEMFYHDQLNEHIGEGDAYKRARPF 617


>gi|257867714|ref|ZP_05647367.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257874041|ref|ZP_05653694.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
 gi|257801797|gb|EEV30700.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257808205|gb|EEV37027.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
          Length = 1449

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 11/199 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTGL +  D IIE+ AV +   +    +F  F+ P G   S   ++L GITDE
Sbjct: 423 YIVFDVETTGLSAVYDTIIELAAVRMHKGN-VEASFDEFIDP-GHPLSRTTVELTGITDE 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   S   +   F +F   + A  +AHNA FD+GF+N   ++    P   + +IDTL 
Sbjct: 481 MVRGSKSEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLE 537

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGSQINFG 184
           +AR  +P   R  L  L K++G+++     H A+ D+      + +++K  +   ++   
Sbjct: 538 LARYLYPEFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMEKHEMLLH 595

Query: 185 FKTNEDRFFKEEKKTVPNI 203
            + N     +   K     
Sbjct: 596 EELNRHVGGENSYKAARPF 614


>gi|52080748|ref|YP_079539.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus licheniformis ATCC 14580]
 gi|52786119|ref|YP_091948.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus licheniformis ATCC 14580]
 gi|319645294|ref|ZP_07999527.1| DinG protein [Bacillus sp. BT1B_CT2]
 gi|52003959|gb|AAU23901.1| ATP-dependent helicase [Bacillus licheniformis ATCC 14580]
 gi|52348621|gb|AAU41255.1| DinG [Bacillus licheniformis ATCC 14580]
 gi|317393103|gb|EFV73897.1| DinG protein [Bacillus sp. BT1B_CT2]
          Length = 930

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 92/182 (50%), Gaps = 9/182 (4%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            N  R +V D+ETTG    K DRII+I AV + +   T R F  ++ PN +       +L
Sbjct: 1   MNNQRYVVIDVETTGNSPKKGDRIIQIAAVVIENGQITER-FSKYVNPN-QPIPAFIEQL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI++E ++++  FS+I  + ++     ++ +IAHN  FD+ F+  ELQ      ++   
Sbjct: 59  TGISNEMVENEEPFSAIAEDIFELL--HDSCFIAHNIHFDLAFVKHELQLAGFGEIE-CS 115

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++DT+ ++R   P      L  L +   I   H + H A  D+ + + +++ MM    ++
Sbjct: 116 VLDTVELSRIVFPGFDGYKLTELSEELQIR--HENPHRADSDAEVTALIFLHMMDRLKRL 173

Query: 182 NF 183
             
Sbjct: 174 PI 175


>gi|310827165|ref|YP_003959522.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
 gi|308738899|gb|ADO36559.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
          Length = 1369

 Score =  165 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 32/250 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL    D IIEI AV++ +    + TF   + P+ R   P    L GIT++
Sbjct: 354 FVFFDLETTGLIPGKDNIIEIAAVKIKNKHIVD-TFSKIVNPH-RPIPPFITNLTGITNQ 411

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D     +    F +F    +   +AHNAKFD+GF+   L   + +  +    IDTL+
Sbjct: 412 MVEDGEEEEAAVKAFCEFCG--DLILVAHNAKFDMGFMEIALNAHHLE--NNITYIDTLA 467

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS-------- 179
           ++R   P+ ++++L  L   + + + H   H AL DS   + +++K+M            
Sbjct: 468 MSRTLIPTINKHNLKKLASYFKVDMGHH--HRALDDSVCSAKIFVKLMELAQKRDVEEVA 525

Query: 180 ---------QINFGFKTNEDRFFKEEKKTVPNISLLKRDK-----PLFTRITKEELDEHD 225
                    QI     T     + + +  + ++  L  +          RI K  L  H 
Sbjct: 526 GLNGLMDVEQIIKSGDTYHIIIYAKNQAGLKDLYKLVSEAHINYFYRRPRIPKSLLAAHR 585

Query: 226 KTIQTLGKNA 235
           + +  +G   
Sbjct: 586 ENL-IIGSAC 594


>gi|257466340|ref|ZP_05630651.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917497|ref|ZP_07913737.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691372|gb|EFS28207.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 1450

 Score =  165 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 93/173 (53%), Gaps = 8/173 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             K   +V+D+ET G +S   +IIEIGAV++++    +R F   + P G+      + + 
Sbjct: 419 LEKASFVVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDR-FSQLVNP-GQSIPQNIVDVT 476

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            ITD  ++++P+   +  +F DF   + +  +AHNA FD+G++  + ++      +PS  
Sbjct: 477 NITDSMVQNEPNIEEVLPKFLDFI--EGSILVAHNADFDIGYLKQQCKQQGYSDFNPS-F 533

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IDTL +A+  +P  +   L  L K+ G+++ +   H A+ D     ++++  +
Sbjct: 534 IDTLQMAKDLYPELKQFGLGPLNKKLGLSLENH--HRAVDDCQATGNMFLIFL 584


>gi|257876620|ref|ZP_05656273.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
 gi|257810786|gb|EEV39606.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
          Length = 1449

 Score =  165 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 11/199 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTGL +  D IIE+ AV +   +    +F  F+ P G   S   ++L GITDE
Sbjct: 423 YIVFDVETTGLSAVYDTIIELAAVRMHKGN-VEASFDEFIDP-GHPLSRTTVELTGITDE 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   S   +   F +F   + A  +AHNA FD+GF+N   ++    P   + +IDTL 
Sbjct: 481 MVRGSKSEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLE 537

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGSQINFG 184
           +AR  +P   R  L  L K++G+++     H A+ D+      + +++K  +   ++   
Sbjct: 538 LARYLYPEFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMEKHEMLLH 595

Query: 185 FKTNEDRFFKEEKKTVPNI 203
            + N     +   K     
Sbjct: 596 EELNRHVGGENSYKAARPF 614


>gi|210612665|ref|ZP_03289413.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787]
 gi|210151467|gb|EEA82475.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787]
          Length = 234

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 111/240 (46%), Gaps = 21/240 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI+      +VFD+ETTGLD +ND IIEIGA+++ +   T+R F  FL P+    SP   
Sbjct: 1   MIKT----YVVFDLETTGLDVENDNIIEIGALKVREGKVTDR-FMEFLKPD-MPISPMIT 54

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            + GIT+E +K+     ++  +F +F   ++   + HN  FD  F+     +  +     
Sbjct: 55  GITGITNEMVKNARDTKTVIRDFVNFC--EDHILVGHNIMFDYKFMKKYASQYGESF--E 110

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            + IDTL IAR+ H       L +LC+ Y I  +  + H A  D+   + VY  M     
Sbjct: 111 KKGIDTLKIARKVHKDLESKSLEALCEHYQIVNT--AAHRAYHDALATAKVYHMMAHYFE 168

Query: 180 QINFGFKTNEDRFFKEEK--------KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           +        E   ++ +K        KT     LLK   PL  +IT+    E  K I  +
Sbjct: 169 EKGPTVFEPEPLLYRPKKVQPITPKQKTYLESLLLKHPFPLEKQITELTRSEASKIIDRI 228


>gi|193212860|ref|YP_001998813.1| DNA polymerase III subunit epsilon [Chlorobaculum parvum NCIB 8327]
 gi|193086337|gb|ACF11613.1| DNA polymerase III, epsilon subunit [Chlorobaculum parvum NCIB
           8327]
          Length = 208

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 10/189 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M R +    +V D ETTGL  +  DR IEIGAV L +    +R FQ  + P G + SP  
Sbjct: 1   MQRASADSVVVLDFETTGLSPQYGDRAIEIGAVLLENGVIVDR-FQRLMNP-GFRISPFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+E LK +P    + + F DF    N   +AHNA FD  F++ EL+R  +    
Sbjct: 59  ESYTGITNEMLKVEPPCEEVMAGFSDFIAGHN--IVAHNASFDRRFLDFELKRARRAYEG 116

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 +L ++RR +     + L +L    GI     S H AL D+ + + +++ M+   
Sbjct: 117 DC--CCSLLLSRRIYQDAPNHKLQTLVNHAGIP-KVGSFHRALADAEMTAHLWLSMIDRI 173

Query: 179 SQINFGFKT 187
            Q ++G + 
Sbjct: 174 RQ-HYGVQA 181


>gi|320528407|ref|ZP_08029569.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
 gi|320131321|gb|EFW23889.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
          Length = 1449

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             + +  I FD+ETTGL    D IIE GAV + + +  +R  Q+F+ P            
Sbjct: 388 NLDDVTYISFDLETTGLSCYFDHIIEFGAVRIKNSTIIDRK-QLFIKPP-VSIPGFITSK 445

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             IT++ +K+   F+    E  D+  +     +AHNA FD  F+N EL+RI + PL  + 
Sbjct: 446 TNITNDMVKNAKPFAEAIDEILDYIKDD--VLVAHNATFDYYFLNEELRRIGRKPL-TNV 502

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +IDTL ++R   P  R   L +L + Y +  +    H A  D+  L+DV++ ++
Sbjct: 503 VIDTLDMSRAVLPDRRAYRLGNLSRYYHVNYNEEEAHRADFDAGALADVFLCLL 556


>gi|257463693|ref|ZP_05628083.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|317061240|ref|ZP_07925725.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|313686916|gb|EFS23751.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
          Length = 1450

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 52/211 (24%), Positives = 104/211 (49%), Gaps = 10/211 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
              K   +V+D+ET G +S   +IIEIGAV++++    +R F   + P G+      + +
Sbjct: 418 ELEKASFVVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDR-FSQLINP-GQSIPQNIVDV 475

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             ITD  ++++P    +   F +F   + +  +AHNA FD+G++  + ++      +P+ 
Sbjct: 476 TNITDSMVQNEPKLEEVLPNFLEFI--RGSILVAHNADFDIGYLKQQCKKYGYSDFNPA- 532

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ- 180
            IDTL +A+  +P  +   L  L K+ G+ + +   H A+ D     ++++  +    + 
Sbjct: 533 FIDTLQMAKDLYPELKQFGLGPLNKKLGLYLENH--HRAVDDCQATGNMFLIFLDKYLER 590

Query: 181 -INFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
            I    +  E      +K+   NI LL +++
Sbjct: 591 GITKLSEMQEAFPVNTKKQNTRNIMLLAKNR 621


>gi|167750041|ref|ZP_02422168.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702]
 gi|167657062|gb|EDS01192.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702]
          Length = 1605

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 61/169 (36%), Positives = 89/169 (52%), Gaps = 11/169 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTGL   N+RI EIGAV+L +     R F  F+ P          +L GITD+
Sbjct: 591 IIVFDIETTGLHPANERITEIGAVKLRNMEIVER-FSTFVNP-MMPIPSNITELTGITDD 648

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+     S+F  F    N+   AHNAKFDV FI +   R+ K   +P  ++DTLS
Sbjct: 649 MVADAPTEDVAVSDFMAFCG--NSPVCAHNAKFDVSFIRSAAARMEKSFDNP--VVDTLS 704

Query: 129 IARRKHPS-SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMM 175
           IA+          L+++ K + +    H   H A+ D+ +L  +Y+ ++
Sbjct: 705 IAKAALKGIKNYKLDTIAKYFKLGDFDH---HRAVADAEMLCMIYMHIV 750


>gi|56963828|ref|YP_175559.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus clausii KSM-K16]
 gi|56910071|dbj|BAD64598.1| ATP-dependent DNA helicase DinG [Bacillus clausii KSM-K16]
          Length = 942

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 102/218 (46%), Gaps = 14/218 (6%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+ETTG    +  ++I+IGAV++   + T+R F  F+ P G    P   +L GITD
Sbjct: 5   FVVIDLETTGNSPDQGAKMIQIGAVKVEGCTITDR-FSTFVDP-GCSIPPFITELTGITD 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++  P F  I ++   F   + +  +AHN  FD GF+ A+L+      L      DT+
Sbjct: 63  KDVEGAPVFREIATDLLAFM--EGSSLVAHNVPFDKGFLEAQLETEGLR-LPKCCQFDTV 119

Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            ++R   P      L+ L     + + H   H A  D+ + ++++IK++    ++     
Sbjct: 120 ELSRVLLPTQESYKLSELSS--SLDMDHDRPHRADSDAEITAELFIKLLHKLERLPL--- 174

Query: 187 TNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELD 222
                  +  K    +  +L R   +  + ++ ++E +
Sbjct: 175 VTLQSLEQVAKGLKSDWDVLTRPLIQKKWMKVDEDERE 212


>gi|291542732|emb|CBL15842.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus
           bromii L2-63]
          Length = 1452

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FDIETTGL +  D+I EIGAV++ +   T+ TF  F  P       +  +L GITD+
Sbjct: 435 FICFDIETTGLSAARDKITEIGAVKVENGVITD-TFSTFANPE-MPIPQKITQLTGITDD 492

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD PS S     F +F  +     +AHNA FD  FI    + + ++       IDT++
Sbjct: 493 MVKDAPSQSEAVGAFLEFAGDN--VLVAHNAPFDTSFIAKACEDMGRE--YNYTSIDTVA 548

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           I+R      +N  L+++ K   + +   + H A  D+ +L+ ++I +
Sbjct: 549 ISRAILTDIKNCKLDTVAKF--LRLGDFNHHRATDDAEMLARIFINL 593


>gi|237649657|ref|ZP_04523909.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974]
 gi|237821357|ref|ZP_04597202.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974M2]
          Length = 1463

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|322392646|ref|ZP_08066106.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
 gi|321144638|gb|EFX40039.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
          Length = 1463

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNIIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   Q+   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLKQVLQEFQEFC--QDTVLVAHNATFDVGFMNANYERHGL-PKITQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALDHH--HMANYDAEATGRLL 581


>gi|219667072|ref|YP_002457507.1| DNA polymerase III subunit alpha [Desulfitobacterium hafniense
           DCB-2]
 gi|219537332|gb|ACL19071.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense
           DCB-2]
          Length = 1447

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 11/194 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG  +  ++I EIG +++      ++ F  F+ P  +      +++  ITD+
Sbjct: 424 YCVLDLETTGFSAATEKITEIGIMKIQGGKIIDQ-FGCFVNPE-KPIPARVVEVTNITDD 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D  +   +F +  +F   + +  +AHNA FD+GF+    + +  D       +DTLS
Sbjct: 482 MVRDAETIDQVFPKILNFI--EGSVLVAHNADFDMGFLKHNAKVLGYDF--DYTYLDTLS 537

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P  +   L  + K  GI +     H AL D      V+  M+    +   G +T
Sbjct: 538 LAKELFPDYKTYKLGRIAKNLGIKVE--VAHRALDDVGTTVKVFNIMVDMLKER--GVET 593

Query: 188 NEDRFFKEEKKTVP 201
            ED   K   +   
Sbjct: 594 LEDIDLKAADEAAR 607


>gi|148994700|ref|ZP_01823804.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|168489751|ref|ZP_02713950.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP195]
 gi|147927100|gb|EDK78140.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|183571799|gb|EDT92327.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP195]
 gi|332075131|gb|EGI85601.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA17570]
          Length = 1463

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|167624226|ref|YP_001674520.1| DNA polymerase III subunit epsilon [Shewanella halifaxensis
           HAW-EB4]
 gi|167354248|gb|ABZ76861.1| DNA polymerase III, epsilon subunit [Shewanella halifaxensis
           HAW-EB4]
          Length = 213

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 68/204 (33%), Positives = 100/204 (49%), Gaps = 12/204 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL   + DR IEIGAV L D    +R FQ  + P G + S       GI++E
Sbjct: 17  IVLDFETTGLSPNQGDRAIEIGAVMLKDGKVIDR-FQQLMNP-GFRVSGFIENYTGISNE 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D  S  ++ ++F DF  + N   +AHNA FD  F++AEL R+N +   P +   ++ 
Sbjct: 75  MLSDAKSCETVMTQFADFIGDYN--LVAHNASFDQRFLDAELSRVNCNY--PGQFACSML 130

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS---QINFG 184
           IARR +     + L SL     I       H AL DS + +D+++ M+   +   QI   
Sbjct: 131 IARRLYQDAPNHKLGSLIHYKNIQ-HDGVFHRALADSEMTADLWLVMLEDLNADYQIKRA 189

Query: 185 FKTNEDRFFKEEKKTVPNISLLKR 208
             +      K+ K +V      +R
Sbjct: 190 DFSLLQAIAKQSKASVSQYLARQR 213


>gi|332203439|gb|EGJ17506.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA47368]
          Length = 1463

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|168490797|ref|ZP_02714940.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC0288-04]
 gi|225853872|ref|YP_002735384.1| DNA polymerase III PolC [Streptococcus pneumoniae JJA]
 gi|183574875|gb|EDT95403.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC0288-04]
 gi|225723163|gb|ACO19016.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae JJA]
          Length = 1463

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|89897057|ref|YP_520544.1| hypothetical protein DSY4311 [Desulfitobacterium hafniense Y51]
 gi|89336505|dbj|BAE86100.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1447

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 11/194 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG  +  ++I EIG +++      ++ F  F+ P  +      +++  ITD+
Sbjct: 424 YCVLDLETTGFSAATEKITEIGIMKIQGGKIIDQ-FGCFVNPE-KPIPARVVEVTNITDD 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D  +   +F +  +F   + +  +AHNA FD+GF+    + +  D       +DTLS
Sbjct: 482 MVRDAETIDQVFPKILNFI--EGSVLVAHNADFDMGFLKHNAKVLGYDF--DYTYLDTLS 537

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P  +   L  + K  GI +     H AL D      V+  M+    +   G +T
Sbjct: 538 LAKELFPDYKTYKLGRIAKNLGIKVE--VAHRALDDVGTTVKVFNIMVDMLKER--GVET 593

Query: 188 NEDRFFKEEKKTVP 201
            ED   K   +   
Sbjct: 594 LEDIDLKAADEAAR 607


>gi|225374652|ref|ZP_03751873.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM
           16841]
 gi|225213511|gb|EEG95865.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM
           16841]
          Length = 228

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTG     D +IEI AV++    K    F   + P  R     A  ++ I+DE
Sbjct: 17  YVLFDLETTGTSCIYDEVIEISAVKVR-SGKVVEEFSQLVNPK-RPIPYAASMVNHISDE 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127
            + ++P F  +  EF  F  +     + HN   FD+ F+  + +R+ +  L  +  +DTL
Sbjct: 75  MVANEPDFGQVLPEFLTFAGDD--ILVGHNIQTFDMKFLYRDCERLFQQKL-TNDYVDTL 131

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +A+   P  R+  L+ L + YGI  S R  H AL D  +   V+  +
Sbjct: 132 RVAKLCFPEWRHRRLSDLAEHYGI--STRGAHRALTDCKMNQQVFEYL 177


>gi|325571082|ref|ZP_08146654.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
 gi|325156167|gb|EGC68353.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
          Length = 1449

 Score =  164 bits (416), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 11/199 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTGL +  D IIE+ AV +   +    +F  F+ P G   S   ++L GITDE
Sbjct: 423 YIVFDVETTGLSAVYDTIIELAAVRMHKGN-VEGSFDEFIDP-GHPLSRTTVELTGITDE 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   S   +   F +F   + A  +AHNA FD+GF+N   ++    P   + +IDTL 
Sbjct: 481 MVRGSKSEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLE 537

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGSQINFG 184
           +AR  +P   R  L  L K++G+++     H A+ D+      + +++K  +    +   
Sbjct: 538 LARYLYPEFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMEKHDMLLH 595

Query: 185 FKTNEDRFFKEEKKTVPNI 203
              N     +   K     
Sbjct: 596 EDLNRHVGGENSYKAARPF 614


>gi|163802995|ref|ZP_02196881.1| DNA polymerase III, alpha subunit [Vibrio sp. AND4]
 gi|159173169|gb|EDP57998.1| DNA polymerase III, alpha subunit [Vibrio sp. AND4]
          Length = 209

 Score =  164 bits (416), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 89/185 (48%), Gaps = 11/185 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M + N    +V D ETTGL     DR IEIGAV+++D  +   +FQ  + P G + S   
Sbjct: 1   MPQANS--VVVLDFETTGLSPNMGDRAIEIGAVKIVDG-EVVDSFQQLMNP-GFRVSSFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+  L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RIN     
Sbjct: 57  EGYTGITNNMLRTAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINLG--Y 112

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 +L +ARR       + L  L +   I       H AL D+ + + +++ M+   
Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIENDG-VFHRALADAQVTARLWLLMVEEL 171

Query: 179 SQINF 183
            Q+  
Sbjct: 172 EQLGI 176


>gi|16800425|ref|NP_470693.1| DNA polymerase III PolC [Listeria innocua Clip11262]
 gi|21263558|sp|Q92C34|DPO3_LISIN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16413830|emb|CAC96588.1| polC [Listeria innocua Clip11262]
 gi|313619136|gb|EFR90925.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           innocua FSL S4-378]
          Length = 1444

 Score =  164 bits (416), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 93/175 (53%), Gaps = 8/175 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +  +F ++  +     +AHNA FD+GFIN   +++  +    + ++DTL 
Sbjct: 486 MVKGSDPIDVVLKQFREWSGDD--ILVAHNASFDMGFINTAYEKVGLEKA-KNAVVDTLE 542

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +AR  +P    + LN+L K++ I +     H A+ D+   + +  K++    +++
Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMH 595


>gi|315302974|ref|ZP_07873694.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           ivanovii FSL F6-596]
 gi|313628654|gb|EFR97067.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           ivanovii FSL F6-596]
          Length = 1452

 Score =  164 bits (416), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 8/182 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I        VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + 
Sbjct: 429 ILLKDATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTIN 486

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K       +   F ++    +   +AHNA FD+GFIN   +++   P   +
Sbjct: 487 LTGITDDMVKGSDPIDVVLQRFKEW--SADDILVAHNASFDMGFINTAYEKVGI-PKAEN 543

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DTL +AR  +P    + LN+L K++ I +     H A+ D+   + +  K++    +
Sbjct: 544 AVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKE 601

Query: 181 IN 182
           ++
Sbjct: 602 MH 603


>gi|306832698|ref|ZP_07465835.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
 gi|304425154|gb|EFM28283.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
          Length = 1464

 Score =  164 bits (416), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  N+   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 419 IELNEATYVVFDVETTGLSAVNNDLIQIAASKMYKGNIVEQ-FDEFINP-GHHLSAFTTE 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +++      +   F +F   Q+   +AHNA FDVGF+NA  +R    P+   
Sbjct: 477 LTGITDNHVRNAKPIEEVLQMFQNFC--QDTVLVAHNATFDVGFMNANYERHGM-PIITQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     + 
Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLL 582


>gi|86145733|ref|ZP_01064062.1| DNA polymerase III, alpha subunit [Vibrio sp. MED222]
 gi|218676919|ref|YP_002395738.1| DNA polymerase III, alpha subunit [Vibrio splendidus LGP32]
 gi|85836432|gb|EAQ54561.1| DNA polymerase III, alpha subunit [Vibrio sp. MED222]
 gi|218325187|emb|CAV27099.1| DNA polymerase III, alpha subunit [Vibrio splendidus LGP32]
          Length = 207

 Score =  164 bits (416), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 10/204 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   +    IV D ETTGL     DR IEIGAV+L++  +   TFQ  + P G + S   
Sbjct: 1   MAPNSADSVIVLDFETTGLSPNMGDRAIEIGAVKLVNG-EVVDTFQQLMNP-GFRVSGFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GI++  L    S S +  EF +F   Q ++ +AHNA FD  F++AEL  I +D   
Sbjct: 59  ESYTGISNRMLSTAASCSEVMDEFANFI--QGSQLVAHNASFDKRFLDAELDFIGRDY-- 114

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +   ++ IARR    +  + L  L +   I     + H AL DS + + +++ +M+  
Sbjct: 115 TGKFACSMLIARRLIQDAPTHKLGDLVRFKNIDNDG-TFHRALADSEMTARLWL-LMIDE 172

Query: 179 SQINFGFKTNEDRFFKEEKKTVPN 202
            Q + G +    +  ++  KT   
Sbjct: 173 LQSDHGIQQPSFQLMQKISKTAKG 196


>gi|257458230|ref|ZP_05623380.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580]
 gi|257444340|gb|EEV19433.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580]
          Length = 216

 Score =  164 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 95/168 (56%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FD ETTGLD    RI+EIGAV+  D       + V + P       EA K++GITDE
Sbjct: 16  FIAFDTETTGLDPAAGRIVEIGAVKF-DRRGIAARYNVLINPEI-PMPEEAGKVNGITDE 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKDKP  +++F +F+DF        +AHNA FD+ +INAEL+RI K PL  ++++DT  
Sbjct: 74  MLKDKPLIAAVFPDFFDFIGTG--VLVAHNAPFDINYINAELKRIGKSPLG-NKVVDTRI 130

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            A+   P  S   L  L  ++GI  +    H A  D+ +  +++ K++
Sbjct: 131 FAKEVFPGLSSYALQDLAVQFGI--TALEAHRAEDDARVCMELFDKIL 176


>gi|23099217|ref|NP_692683.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Oceanobacillus iheyensis HTE831]
 gi|22777446|dbj|BAC13718.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 939

 Score =  164 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 9/178 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D+ETTG    KND+IIEIG V +++  +   T   F  P G+   P    L GI+
Sbjct: 3   RFVVIDLETTGHAPSKNDKIIEIGMV-IIEGDEIIDTKTTFFNP-GQPIPPFITNLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ + D P F+            +++  IAHN  FD+GF+NAEL+    D L  ++++DT
Sbjct: 61  DDDVADAPLFTEKALSIKSIL--EDSYIIAHNVNFDLGFLNAELKENGIDRLH-NQVLDT 117

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           + ++R   P++    L+ L   + +   H   H AL D+++ + ++ K+M   +Q+ +
Sbjct: 118 VELSRILFPTAPGYKLSQLSDHFNLQ--HDDPHRALSDAYVTAKLFQKLMDKINQLPY 173


>gi|15614254|ref|NP_242557.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus halodurans C-125]
 gi|10174308|dbj|BAB05410.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
          Length = 942

 Score =  164 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 9/164 (5%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V DIETTG   ++ DRIIEIGAV +++  +   +F   + P  R   P   +L GI+
Sbjct: 4   RFVVIDIETTGQSVAQGDRIIEIGAV-VIEDEEAVESFCTLVNPE-RSIPPFIEELTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE +K  P+F     E       +   ++AHN  FD+ F+   L+     PL    IIDT
Sbjct: 62  DEMVKGAPTFHQCIPELMSML--EGGVFVAHNVHFDLSFLQKLLEHEGYGPLLV-PIIDT 118

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R   P      L++L ++ G  + H + H A  D+ + +D
Sbjct: 119 VELSRILLPTEESYKLSALTEQLG--LEHENPHRADSDAKVTAD 160


>gi|294677643|ref|YP_003578258.1| PAS domain/exonuclease domain-containing protein [Rhodobacter
           capsulatus SB 1003]
 gi|6014992|sp|O68045|DPO3E_RHOCA RecName: Full=DNA polymerase III subunit epsilon-like protein
 gi|3128279|gb|AAC16131.1| DNA polymerase III alpha chain [Rhodobacter capsulatus SB 1003]
 gi|294476463|gb|ADE85851.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB
           1003]
          Length = 704

 Score =  164 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 8/177 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEA 59
              +K+  +VFD ETTGL     D I++I AV +++  +     F   + P GR     +
Sbjct: 503 TPLDKLTFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNP-GRPIPAAS 561

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGIT+  +   P+ + +   F  F   + A  +AHNA FD+ F+  +   I K+  +
Sbjct: 562 TAVHGITEAMVATAPAIAEVGRRFHKF--AEGAVLVAHNAPFDLEFLRRKELLIGKNFDN 619

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           P  ++DT+ ++     ++  + L++L  R GITI   ++H AL D+   ++ +++++
Sbjct: 620 P--VLDTVLLSAVVFGAAEGHSLDALTHRLGITIPEEARHTALGDTVATAEAFLRLL 674


>gi|218282259|ref|ZP_03488558.1| hypothetical protein EUBIFOR_01140 [Eubacterium biforme DSM 3989]
 gi|218216727|gb|EEC90265.1| hypothetical protein EUBIFOR_01140 [Eubacterium biforme DSM 3989]
          Length = 525

 Score =  164 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 10/172 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FD+ETTGLDSK DRIIE+GA+   +   T  T+   + P   K S EA  ++ IT+
Sbjct: 51  RYVAFDVETTGLDSKKDRIIEVGAILFENGH-TVETYSSLVNPE-VKISKEATTINHITN 108

Query: 68  EFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
             +K  P+   +  E   F  +   +     AHNA FD+ F++  L R   D       +
Sbjct: 109 GMVKKAPTEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLSQALMRQGYDA--QILCL 166

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DTLS++R+  P  S     ++ K + I   ++ +H A+ D+ +  ++  K++
Sbjct: 167 DTLSLSRKIIPGLSNYKQTTVAKHFNIK--NKQEHRAISDAEVCGEILWKLL 216


>gi|149017968|ref|ZP_01834427.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931532|gb|EDK82510.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP23-BS72]
          Length = 1463

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|257869605|ref|ZP_05649258.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
 gi|257803769|gb|EEV32591.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
          Length = 1449

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 8/163 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTGL +  D IIE+ AV +   +    +F  F+ P G   S   ++L GITDE
Sbjct: 423 YIVFDVETTGLSAVYDTIIELAAVRMHKGN-VEGSFDEFIDP-GHPLSRTTVELTGITDE 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   S   +   F +F   + A  +AHNA FD+GF+N   ++    P   + +IDTL 
Sbjct: 481 MVRGSKSEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLE 537

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +AR  +P   R  L  L K++G+++     H A+ D+     +
Sbjct: 538 LARYLYPEFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHL 578


>gi|327468385|gb|EGF13870.1| DNA polymerase III PolC [Streptococcus sanguinis SK330]
          Length = 1462

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++      +  EF +F   Q++  +AHNA FDVGF+N   +R    P    
Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|148983680|ref|ZP_01816999.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP3-BS71]
 gi|147923827|gb|EDK74939.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP3-BS71]
 gi|301799415|emb|CBW31952.1| DNA polymerase III PolC-type [Streptococcus pneumoniae OXC141]
          Length = 1463

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|322377559|ref|ZP_08052049.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M334]
 gi|321281324|gb|EFX58334.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M334]
          Length = 1463

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|39938951|ref|NP_950717.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722060|dbj|BAD04550.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 1571

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D+IIEI  V++   +K    FQ F+ P  +K +     +  ITDE
Sbjct: 481 YVVFDLETTGLSNVRDKIIEIAGVKIKKGNKIGE-FQKFIDPQ-QKLTKTITDITNITDE 538

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+ + +   +  +F  F   ++   +AHNA FD+ F+  + + +    L+P  IIDT++
Sbjct: 539 MLQGQQTIDQVLPQFLAF--AKDCVLVAHNASFDINFLKEKAKELKIS-LEPQPIIDTMA 595

Query: 129 IARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +++R   +      L  L   + + +     H AL D+   ++++IKM+
Sbjct: 596 LSQRYFSNLLKYFSLKRLATFFKVKLEDH--HRALADATATAEIFIKMI 642


>gi|324989747|gb|EGC21690.1| DNA polymerase III PolC [Streptococcus sanguinis SK353]
          Length = 1462

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++      +  EF +F   Q++  +AHNA FDVGF+N   +R    P    
Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|227534929|ref|ZP_03964978.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187685|gb|EEI67752.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 1437

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 9/183 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P G   S   + L  ITD+
Sbjct: 414 YVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQ-FEEMIDP-GFPLSELTINLTHITDD 471

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    S   +F  F  F +   A  + HN  FDVGF++   +R     +D + +IDTL 
Sbjct: 472 MVHGSKSEVDVFKLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 528

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  HP  + + L++L K+Y +++ H   H A  D+     +   +    +++ +G  T
Sbjct: 529 LSRMLHPERKNHKLDTLAKQYKVSLEHH--HRANADAEATGYLLYALEKEAAKM-YGMTT 585

Query: 188 NED 190
              
Sbjct: 586 LNQ 588


>gi|332365112|gb|EGJ42875.1| DNA polymerase III PolC [Streptococcus sanguinis SK1059]
          Length = 1462

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++      +  EF +F   Q++  +AHNA FDVGF+N   +R    P    
Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|303238571|ref|ZP_07325105.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
 gi|302593969|gb|EFL63683.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
          Length = 1446

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 9/207 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     ++I E+G ++L D    ++ F  F+ P  +      +++  ITD 
Sbjct: 423 YCVLDLETTGFSPLTEKITEVGIMKLKDGKVIDQ-FSCFVNPE-KPIPARVVEVTNITDY 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D  +   +F +  +F   + +  +AHNA+FD+GF+    + +  +       +DTLS
Sbjct: 481 MVQDAETIEKVFPKMLEFI--EGSVLVAHNAEFDIGFLKHNAKVLGYNF--DFTYLDTLS 536

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P  +   L  + K  GI +     H AL D      V+  M+    +       
Sbjct: 537 LAKEIFPDYKSYKLGRIAKNLGIKVD--VAHRALDDVDTTVKVFNIMLEKLKEKGVQTLE 594

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFT 214
           + D +  +E+        LK    +  
Sbjct: 595 DVDTYSSDEEAKKSEYKKLKTYHAIIL 621


>gi|294678385|ref|YP_003579000.1| PAS domain/exonuclease domain-containing protein [Rhodobacter
           capsulatus SB 1003]
 gi|294477205|gb|ADE86593.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB
           1003]
          Length = 704

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 8/177 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEA 59
              +K+  +VFD ETTGL     D I++I AV +++  +     F   + P GR     +
Sbjct: 503 TPLDKLTFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNP-GRPIPAAS 561

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGIT+  +   P+ + +   F  F   + A  +AHNA FD+ F+  +   I K+  +
Sbjct: 562 TAVHGITEAMVATAPAIAEVGRRFHKF--AEGAVLVAHNAPFDLEFLRRKELLIGKNFDN 619

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           P  ++DT+ ++     ++  + L++L  R GITI   ++H AL D+   ++ +++++
Sbjct: 620 P--VLDTVLLSAVVFGAAEGHSLDALTHRLGITIPEEARHTALGDTVATAEAFLRLL 674


>gi|229544028|ref|ZP_04433087.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans
           36D1]
 gi|229325167|gb|EEN90843.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans
           36D1]
          Length = 930

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 9/177 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            R +V D+ETTG  +K  DRII+  AV +++  +    F  F+ P  +   P   +L GI
Sbjct: 2   QRYVVVDLETTGNSAKKGDRIIQFSAV-VVEGREIKTQFTSFVNPE-KPVPPFISELTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  L++ P FS I     +    +++ ++AHN  FD+ F+  EL+     P      +D
Sbjct: 60  DNGMLEEAPVFSEIAPRIMEIL--EDSIFVAHNVLFDLPFLQQELKAAGFPPF-RGPSLD 116

Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           T+  +R   P+     L  L     +++ H   H A  D+ + + + +  M   + +
Sbjct: 117 TVEFSRIAFPTLNSYKLGDLAD--SLSLYHERPHRADSDAFVTAKLLLACMEKCASL 171


>gi|260583917|ref|ZP_05851665.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
           700633]
 gi|260158543|gb|EEW93611.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
           700633]
          Length = 1441

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 11/198 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I       +VFD+ETTGL +  D IIE+ AV++   +  ++ F+ F+ P G   S   ++
Sbjct: 419 ILLEDATYVVFDVETTGLSAIYDSIIELAAVKMHKGNVIDK-FEEFIDP-GHPLSATTIQ 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ ++   S + +  EF  F   ++   +AHNA FD+GF+N   ++   +     
Sbjct: 477 LTGITDDMVRGSKSQAQVLKEFAAF--TKDTILVAHNASFDMGFLNTGYEKEGLEK-TTQ 533

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVG 177
            +IDTL ++R  HP  + + LN+L KRY + +     H A+ DS     +   ++K    
Sbjct: 534 PVIDTLELSRLLHPHLKSHRLNTLAKRYNVALEQH--HRAVFDSETTGHLCHIFLKEAAN 591

Query: 178 GSQINFGFKTNEDRFFKE 195
              + +  + N +   +E
Sbjct: 592 DHGLIYHDQLNTNLHPEE 609


>gi|303259383|ref|ZP_07345360.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|303261138|ref|ZP_07347087.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|303263466|ref|ZP_07349389.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
 gi|303265758|ref|ZP_07351656.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|303267811|ref|ZP_07353613.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302637975|gb|EFL68461.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|302639317|gb|EFL69775.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|302642507|gb|EFL72852.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302644666|gb|EFL74915.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|302647239|gb|EFL77463.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
          Length = 1463

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|325695495|gb|EGD37395.1| DNA polymerase III PolC [Streptococcus sanguinis SK150]
          Length = 1462

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++      +  EF +F   Q++  +AHNA FDVGF+N   +R    P    
Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|325688979|gb|EGD30987.1| DNA polymerase III PolC [Streptococcus sanguinis SK115]
          Length = 1462

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++      +  EF +F   Q++  +AHNA FDVGF+N   +R    P    
Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|116495060|ref|YP_806794.1| DNA polymerase III PolC [Lactobacillus casei ATCC 334]
 gi|122263523|sp|Q038M0|DPO3_LACC3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116105210|gb|ABJ70352.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           casei ATCC 334]
          Length = 1444

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 9/183 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P G   S   + L  ITD+
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQ-FEEMIDP-GFPLSELTINLTHITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    S   +F  F  F +   A  + HN  FDVGF++   +R     +D + +IDTL 
Sbjct: 479 MVHGSKSEVDVFKLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 535

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  HP  + + L++L K+Y +++ H   H A  D+     +   +    +++ +G  T
Sbjct: 536 LSRMLHPERKNHKLDTLAKQYKVSLEHH--HRANADAEATGYLLYALEKEAAKM-YGMTT 592

Query: 188 NED 190
              
Sbjct: 593 LNQ 595


>gi|328944876|gb|EGG39036.1| DNA polymerase III PolC [Streptococcus sanguinis SK1087]
          Length = 1462

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++      +  EF +F   Q++  +AHNA FDVGF+N   +R    P    
Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|323350531|ref|ZP_08086193.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
 gi|322123213|gb|EFX94898.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
          Length = 1462

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++      +  EF +F   Q++  +AHNA FDVGF+N   +R    P    
Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|191638563|ref|YP_001987729.1| DNA polymerase III PolC [Lactobacillus casei BL23]
 gi|190712865|emb|CAQ66871.1| DNA polymerase III polC-type (PolIII) [Lactobacillus casei BL23]
 gi|327382601|gb|AEA54077.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus casei LC2W]
 gi|327385799|gb|AEA57273.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus casei BD-II]
          Length = 1444

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 9/183 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P G   S   + L  ITD+
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQ-FEEMIDP-GFPLSELTINLTHITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    S   +F  F  F +   A  + HN  FDVGF++   +R     +D + +IDTL 
Sbjct: 479 MVHGSKSEVDVFKLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 535

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  HP  + + L++L K+Y +++ H   H A  D+     +   +    +++ +G  T
Sbjct: 536 LSRMLHPERKNHKLDTLAKQYKVSLEHH--HRANADAEATGYLLYALEKEAAKM-YGMTT 592

Query: 188 NED 190
              
Sbjct: 593 LNQ 595


>gi|27367395|ref|NP_762922.1| DNA polymerase III subunit alpha [Vibrio vulnificus CMCP6]
 gi|27358964|gb|AAO07912.1| DNA polymerase III alpha subunit [Vibrio vulnificus CMCP6]
          Length = 204

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 88/178 (49%), Gaps = 11/178 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M + N    +V D ETTGL     DR IEIGAV+++D  +   +FQ  + P G + S   
Sbjct: 1   MPQANS--VVVLDFETTGLSPNLGDRAIEIGAVKIVDG-EVVDSFQQLMNP-GFRVSSFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+  L+  PS   + + F +F   +N   IAHNA FD  F++AEL+RIN D   
Sbjct: 57  ESYTGITNNMLRSAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCD--Y 112

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                 +L +ARR       + L  L +   I       H AL D+ + + +++ M+ 
Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDG-IFHRALADAQMTAKLWLLMVE 169


>gi|307707703|ref|ZP_07644182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis NCTC 12261]
 gi|307616201|gb|EFN95395.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis NCTC 12261]
          Length = 1463

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|258611758|ref|ZP_05711628.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
 gi|258605945|gb|EEW18553.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
          Length = 1144

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 128 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 185

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL 
Sbjct: 186 MVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLE 242

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFK 186
           +AR  +P    + LN+L K++ I +     H A+ D+   + +  K++    ++ N  F 
Sbjct: 243 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHNIDFH 300

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211
            + + +  E           KR +P
Sbjct: 301 DSLNDYMGEGDAY-------KRARP 318


>gi|325697436|gb|EGD39322.1| DNA polymerase III PolC [Streptococcus sanguinis SK160]
          Length = 1462

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++      +  EF +F   Q++  +AHNA FDVGF+N   +R    P    
Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|229825431|ref|ZP_04451500.1| hypothetical protein GCWU000182_00790 [Abiotrophia defectiva ATCC
           49176]
 gi|229789994|gb|EEP26108.1| hypothetical protein GCWU000182_00790 [Abiotrophia defectiva ATCC
           49176]
          Length = 223

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTG+  + D++IEI A+++ +       F   + P  R     A +++GITDE
Sbjct: 17  YTVFDLETTGVSPQTDKVIEISAIKVRNGQTVGE-FSSLVNP-MRGIPYGATRVNGITDE 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTL 127
            + DKP F  +  +F DF   ++   + HN   FD+ FI+ + +   +  L  +  IDTL
Sbjct: 75  MVADKPVFEKVLGDFLDFV--EDDILVGHNIHDFDMKFIHRDCEAFFRMFLG-NDYIDTL 131

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            IAR+  P    + L  L   Y I+I+    H AL D  +   V+ ++
Sbjct: 132 PIARKCLPQLGHHRLTDLALYYKISING--AHRALNDCRMNQLVFERL 177


>gi|226941443|ref|YP_002796517.1| DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9]
 gi|226716370|gb|ACO75508.1| Probable DNA-directed DNA polymerase III [Laribacter hongkongensis
           HLHK9]
          Length = 493

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 11/175 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG     DRI EIG VE + +  T R +   + P G+   P   ++ GI+D 
Sbjct: 6   YVIVDLETTGGHITRDRITEIGLVE-VSHGVTTR-WSQLVNP-GQPIPPFIEEMTGISDA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P F+ +        N      IAHNA+FD GF+  E +R+       +  + T+ 
Sbjct: 63  MVAEAPPFAELAPALLARLN--GKLLIAHNARFDYGFLKNEFRRLGLTF--TTDPLCTVK 118

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++RR +P   ++ L+SL  R+GI +    +H AL D+     VY+ +    +++ 
Sbjct: 119 LSRRLYPQHAKHSLDSLIARHGIDVPPGMRHRALGDAEA---VYVFLQTAVAELG 170


>gi|239631345|ref|ZP_04674376.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066623|ref|YP_003788646.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang]
 gi|239525810|gb|EEQ64811.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300439030|gb|ADK18796.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus casei str. Zhang]
          Length = 1444

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 9/183 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P G   S   + L  ITD+
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQ-FEEMIDP-GFPLSELTINLTHITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    S   +F  F  F +   A  + HN  FDVGF++   +R     +D + +IDTL 
Sbjct: 479 MVHGSKSEVDVFKLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 535

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  HP  + + L++L K+Y +++ H   H A  D+     +   +    +++ +G  T
Sbjct: 536 LSRMLHPERKNHKLDTLAKQYKVSLEHH--HRANADAEATGYLLYALEKEAAKM-YGMTT 592

Query: 188 NED 190
              
Sbjct: 593 LNQ 595


>gi|327472427|gb|EGF17858.1| DNA polymerase III PolC [Streptococcus sanguinis SK408]
          Length = 1462

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 417 MELSNATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++      +  EF +F   Q++  +AHNA FDVGF+N   +R    P    
Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|307710886|ref|ZP_07647313.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK321]
 gi|307617331|gb|EFN96504.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK321]
          Length = 1463

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PRISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|323342031|ref|ZP_08082264.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464456|gb|EFY09649.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 1433

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 106/233 (45%), Gaps = 17/233 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL +  D IIE G V L++  +  +  Q F+        P   +L  ITD 
Sbjct: 385 YVSFDLETTGLSNYYDHIIEFGGV-LIENGRVVKKMQTFIK-APVPVRPFIQELTNITDA 442

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L + PS      E  +F  +     +AHNA+FD+ FI   L+RI K+P+  + +IDTL 
Sbjct: 443 DLVNAPSIEEAMDEILEFLGDH--VLVAHNAQFDIDFIQETLRRIGKEPI-QNAVIDTLD 499

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV------GGSQI 181
           ++R    + R   L S+ +   I       H A  D+ +LS V+++M+         +  
Sbjct: 500 LSRALFDNRRSYRLGSIARFMRIGYDEGVAHRADYDAEVLSLVFLEMLRLEQLSTMQTID 559

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGK 233
           +     NE  F K  K     I+  +   K L+  IT      H K +   GK
Sbjct: 560 DLQSLNNESSFKKLRKSHCTVIAKTQSSIKDLYQLITLS----HTKYLAFFGK 608


>gi|289167137|ref|YP_003445404.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
 gi|288906702|emb|CBJ21536.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
          Length = 1463

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 8/169 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L 
Sbjct: 420 LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNIVAE-FDEFINP-GHPLSAFTTELT 477

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P     +
Sbjct: 478 GITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQPV 534

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 535 IDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|258615946|ref|ZP_05713716.1| DNA polymerase III PolC [Enterococcus faecium DO]
          Length = 663

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +VFD+ETTGL +  D IIE+ AV++   +    +F  F+ P G   S   + L 
Sbjct: 422 LSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 479

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD  ++   S   +   F +F   ++   +AHNA FD+GF+N    R    P   + +
Sbjct: 480 GITDGMVRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPV 536

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179
           IDTL +AR  +P   R  L  L K++G+++     H A+ D+      + +++K  +   
Sbjct: 537 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 594

Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203
            + +  + NE     +  K     
Sbjct: 595 NMLYHDQLNEHIGEGDSYKRARPF 618


>gi|229490475|ref|ZP_04384316.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis
           SK121]
 gi|229322765|gb|EEN88545.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis
           SK121]
          Length = 608

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 93/212 (43%), Gaps = 17/212 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              ++   +V D+ETTG  +  D I EIGAV++             + P GR   P  ++
Sbjct: 56  TPLSETTFVVVDLETTGGSADQDSITEIGAVKIRGGEVLGE-MATLVDP-GRSIPPYIVE 113

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT   L   P    +   F +F   + A  +AHNA FD+GF+ A   R  + P    
Sbjct: 114 LTGITTAMLIGAPPIERVLPAFLEF--AEGAVLVAHNAPFDIGFLKAAASRSAR-PWPAF 170

Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           R++ T+ +ARR           L++L   + +T   +  H AL D+    DV   ++   
Sbjct: 171 RVLCTVKLARRVLTRDEAPSVKLSALAHLFQVTT--QPTHRALDDARATVDVLHGLI--D 226

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
              N G  +     + E    +PNIS  +R K
Sbjct: 227 RVGNQGVHS-----YSELVDYLPNISSHQRAK 253


>gi|307705682|ref|ZP_07642529.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK597]
 gi|307620762|gb|EFN99851.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK597]
          Length = 1463

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|295426318|ref|ZP_06818977.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664]
 gi|295063991|gb|EFG54940.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664]
          Length = 1435

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 14/211 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       ++FD+ETTGL S  D IIEIGAV++ +  K    F  F+ P+    S + + 
Sbjct: 411 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNG-KVLERFDKFINPH-HPLSDQTIN 468

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +        +  +F DF+   +     HN +FDVGF+NA L+R   + +   
Sbjct: 469 LTSITDEMVGAADDEDVVIRQFKDFYG--DMPLCGHNVQFDVGFVNAALRRAGLEEI-KQ 525

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DTL ++R  HP   R+ L+SL K+Y + + H   H A  D+     +  K++    +
Sbjct: 526 PVVDTLEVSRLLHPEQTRHTLDSLVKKYDVVLEHH--HRANQDAEATGYLMYKLLDAFKK 583

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                   +   F +  +T       KR +P
Sbjct: 584 KFGEDNLGKLNDFAKHGET------FKRARP 608


>gi|327460706|gb|EGF07041.1| DNA polymerase III PolC [Streptococcus sanguinis SK1]
          Length = 1462

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 417 MELSNATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++      +  EF +F   Q++  +AHNA FDVGF+N   +R    P    
Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|283769479|ref|ZP_06342375.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
           extructa W1219]
 gi|283103747|gb|EFC05133.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
           extructa W1219]
          Length = 1442

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 101/189 (53%), Gaps = 7/189 (3%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + ++   +VFD+ETTGL +K D +IE GAV++ +  + +   Q+F+ P          K 
Sbjct: 387 KIDEATYVVFDLETTGLSAKYDYMIEFGAVKIKNGLRLDSK-QLFIKPPI-SIPAFIEKK 444

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             I++E +++  SFS +  E   +    +A  +AHNA FD  F+N EL+R+++ PL  + 
Sbjct: 445 TNISNEMVRNAKSFSEVVDELLAYIG--DAVLVAHNASFDFPFLNEELRRLSRKPL-TNP 501

Query: 123 IIDTLSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +IDTL +AR      SR  L  +   Y +  S    H A  D+++L+D +  ++V   + 
Sbjct: 502 VIDTLDMARAILSDRSRFALEYVSNHYKLNYSRSDAHRADYDANILADAFEHLLVDAKR- 560

Query: 182 NFGFKTNED 190
            F  +T  D
Sbjct: 561 QFQVETIRD 569


>gi|306824435|ref|ZP_07457781.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304433222|gb|EFM36192.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 1463

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|270292055|ref|ZP_06198270.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M143]
 gi|270279583|gb|EFA25425.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M143]
          Length = 1463

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|324992474|gb|EGC24395.1| DNA polymerase III PolC [Streptococcus sanguinis SK405]
 gi|324995996|gb|EGC27907.1| DNA polymerase III PolC [Streptococcus sanguinis SK678]
 gi|327488780|gb|EGF20579.1| DNA polymerase III PolC [Streptococcus sanguinis SK1058]
          Length = 1462

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 417 MELSNATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++      +  EF +F   Q++  +AHNA FDVGF+N   +R    P    
Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|327462769|gb|EGF09091.1| DNA polymerase III PolC [Streptococcus sanguinis SK1057]
          Length = 1462

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GYPLSAFTTD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++      +  EF +F   Q++  +AHNA FDVGF+N   +R    P    
Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|157375547|ref|YP_001474147.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157317921|gb|ABV37019.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 208

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M  +     IV D ETTGL   + DR IEIGAV+L D      TFQ  + P G + S   
Sbjct: 1   MTTRAANSVIVLDFETTGLSPNQGDRAIEIGAVKLQDG-IVVDTFQELMNP-GFRVSGFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+  L   P  + + ++F  F    N   +AHNA FD  F++AEL  I +    
Sbjct: 59  EGYTGITNAMLNSAPPCNEVMAQFAGFIGNDN--LVAHNASFDKRFLDAELDGIGRT--Y 114

Query: 120 PSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                 ++ IARR +  +  + L  L +   I       H AL DS + + +++KM+ 
Sbjct: 115 GGEFACSMLIARRLYQAAPNHKLGGLVEYKQIENDG-VFHRALADSEVTAKLWLKMLE 171


>gi|302392350|ref|YP_003828170.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium
           arabaticum DSM 5501]
 gi|302204427|gb|ADL13105.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium
           arabaticum DSM 5501]
          Length = 1440

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 7/167 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   +   IVFD+ETTG +  ++ IIEIGA ++ D    +R F   + P   +     ++
Sbjct: 421 VELEETEYIVFDLETTGFNPYHNEIIEIGAAKVKDGRIIDR-FGTLVDPET-EIPERIVE 478

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GI +  +  KP      +EF DF  E  A  +AHN  FD  FIN +LQ I +  LD +
Sbjct: 479 LTGIDNSMVAGKPKKEEALNEFLDFVGE--ATIVAHNLSFDRNFINNKLQAIGESALD-N 535

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             +DTL++AR         LN L K +  ++ +   H A+ D+ + +
Sbjct: 536 SALDTLNLARALLDLKSFKLNRLAKEFDKSLDNH--HRAVDDAEVTA 580


>gi|332311763|gb|EGJ24858.1| DNA polymerase III polC-type [Listeria monocytogenes str. Scott A]
          Length = 1457

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 441 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 498

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL 
Sbjct: 499 MVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLE 555

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFK 186
           +AR  +P    + LN+L K++ I +     H A+ D+   + +  K++    ++ N  F 
Sbjct: 556 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHNIDFH 613

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211
            + + +  E           KR +P
Sbjct: 614 DSLNDYMGEGDAY-------KRARP 631


>gi|224499902|ref|ZP_03668251.1| DNA polymerase III PolC [Listeria monocytogenes Finland 1988]
          Length = 1444

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL 
Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLE 542

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFK 186
           +AR  +P    + LN+L K++ I +     H A+ D+   + +  K++    ++ N  F 
Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHNIDFH 600

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211
            + + +  E           KR +P
Sbjct: 601 DSLNDYMGEGDAY-------KRARP 618


>gi|254828680|ref|ZP_05233367.1| polC [Listeria monocytogenes FSL N3-165]
 gi|254829923|ref|ZP_05234578.1| DNA polymerase III PolC [Listeria monocytogenes 10403S]
 gi|254898515|ref|ZP_05258439.1| DNA polymerase III PolC [Listeria monocytogenes J0161]
 gi|254911994|ref|ZP_05262006.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|254936321|ref|ZP_05268018.1| polC [Listeria monocytogenes F6900]
 gi|255026351|ref|ZP_05298337.1| DNA polymerase III PolC [Listeria monocytogenes FSL J2-003]
 gi|284801705|ref|YP_003413570.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284994847|ref|YP_003416615.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|258601084|gb|EEW14409.1| polC [Listeria monocytogenes FSL N3-165]
 gi|258608911|gb|EEW21519.1| polC [Listeria monocytogenes F6900]
 gi|284057267|gb|ADB68208.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284060314|gb|ADB71253.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|293589958|gb|EFF98292.1| DNA polymerase III [Listeria monocytogenes J2818]
          Length = 1444

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL 
Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLE 542

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFK 186
           +AR  +P    + LN+L K++ I +     H A+ D+   + +  K++    ++ N  F 
Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHNIDFH 600

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211
            + + +  E           KR +P
Sbjct: 601 DSLNDYMGEGDAY-------KRARP 618


>gi|16803360|ref|NP_464845.1| DNA polymerase III PolC [Listeria monocytogenes EGD-e]
 gi|21263551|sp|Q8Y7G1|DPO3_LISMO RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16410736|emb|CAC99398.1| polC [Listeria monocytogenes EGD-e]
          Length = 1444

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL 
Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLE 542

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFK 186
           +AR  +P    + LN+L K++ I +     H A+ D+   + +  K++    ++ N  F 
Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHNIDFH 600

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211
            + + +  E           KR +P
Sbjct: 601 DSLNDYMGEGDAY-------KRARP 618


>gi|125718854|ref|YP_001035987.1| DNA polymerase III PolC [Streptococcus sanguinis SK36]
 gi|166217455|sp|A3CQI2|DPO3_STRSV RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|125498771|gb|ABN45437.1| DNA polymerase III polC-type, putative [Streptococcus sanguinis
           SK36]
          Length = 1462

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++      +  EF +F   Q++  +AHNA FDVGF+N   +R    P    
Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKIIQ 531

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|331701344|ref|YP_004398303.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
 gi|329128687|gb|AEB73240.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
          Length = 1439

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 97/198 (48%), Gaps = 11/198 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD ETTGL +  DR+IE+ AV++ + +  ++ F+ F+ P G   S     L  ITDE
Sbjct: 420 YVVFDTETTGLSAIYDRVIELSAVKMQNSNVIDQ-FEEFIDP-GFHLSERTTNLTSITDE 477

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    S   +F  F +F    +A  + HN  FD+GF+N    R        + IIDTL+
Sbjct: 478 MVHGSKSEEEVFKLFREFCG--DAIVVGHNVTFDMGFMNTGYVRHGMHE-MQNPIIDTLT 534

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVGGSQINFG 184
           +AR  +P+ R   LN+L K++ +++ H   H A+ D+        +++K       I + 
Sbjct: 535 LARFLYPNLRGYRLNTLAKKFDVSLEHH--HRAIYDAETTGHLNYLFLKDAEDRYGIVYH 592

Query: 185 FKTNEDRFFKEEKKTVPN 202
            + N+     +  +    
Sbjct: 593 DQLNDHMTDNDAYRHARP 610


>gi|293364694|ref|ZP_06611411.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307702942|ref|ZP_07639889.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus oralis ATCC 35037]
 gi|291316144|gb|EFE56580.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307623335|gb|EFO02325.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus oralis ATCC 35037]
          Length = 1463

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|224501737|ref|ZP_03670044.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-561]
          Length = 1444

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL 
Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLE 542

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFK 186
           +AR  +P    + LN+L K++ I +     H A+ D+   + +  K++    ++ N  F 
Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHNIDFH 600

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211
            + + +  E           KR +P
Sbjct: 601 DSLNDYMGEGDAY-------KRARP 618


>gi|226223921|ref|YP_002758028.1| DNA polymerase III (alpha subunit) [Listeria monocytogenes
           Clip81459]
 gi|225876383|emb|CAS05092.1| Putative DNA polymerase III (alpha subunit) [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 1444

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL 
Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLE 542

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFK 186
           +AR  +P    + LN+L K++ I +     H A+ D+   + +  K++    ++ N  F 
Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHNIDFH 600

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211
            + + +  E           KR +P
Sbjct: 601 DSLNDYMGEGDAY-------KRARP 618


>gi|254932365|ref|ZP_05265724.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|293583921|gb|EFF95953.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|328475042|gb|EGF45830.1| DNA polymerase III PolC [Listeria monocytogenes 220]
          Length = 1444

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL 
Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLE 542

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFK 186
           +AR  +P    + LN+L K++ I +     H A+ D+   + +  K++    ++ N  F 
Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHNIDFH 600

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211
            + + +  E           KR +P
Sbjct: 601 DSLNDYMGEGDAY-------KRARP 618


>gi|148244527|ref|YP_001219221.1| DNA polymerase III epsilon subunit [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326354|dbj|BAF61497.1| DNA polymerase III epsilon subunit [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 223

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/228 (35%), Positives = 125/228 (54%), Gaps = 11/228 (4%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGI 65
           R IV D ETTG+   +  RIIEIG +E++D   T N  +  ++ PN  +N  +++++HGI
Sbjct: 3   RLIVLDTETTGIKPSEGHRIIEIGCIEIIDRQITKNNKYHEYIQPN--RNVGDSVRIHGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRI 123
           TD+FL  KP F  +  EF  +  E     I HNA FD+GF+N EL+ I  +    D   I
Sbjct: 61  TDKFLTKKPKFKEVVEEFLAYIKE--TTLIIHNAPFDLGFLNHELKLIGINERIEDKCTI 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ID+L +++++ P + ++L+SLC+R+ I  S R+ HGALLD  +L+ VY+ M  G S +  
Sbjct: 119 IDSLELSKQQRPGTLHNLDSLCRRFKIDSSARTVHGALLDVQILAQVYLAMTGGQSTLFS 178

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
             KT  ++          N ++ K          K+EL  H    + L
Sbjct: 179 NDKTINEQDNNTNNIVRINNAIGKIK---IVYANKKELAAHADYFKKL 223


>gi|327390689|gb|EGE89029.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA04375]
          Length = 1463

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GYPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|229096133|ref|ZP_04227106.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-29]
 gi|229115089|ref|ZP_04244499.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-3]
 gi|228668229|gb|EEL23661.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-3]
 gi|228687093|gb|EEL40998.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-29]
          Length = 934

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+      +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPVFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|46907546|ref|YP_013935.1| DNA polymerase III PolC [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093944|ref|ZP_00231681.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes str. 4b H7858]
 gi|254824621|ref|ZP_05229622.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300765440|ref|ZP_07075422.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL N1-017]
 gi|67460321|sp|Q720A2|DPO3_LISMF RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|46880814|gb|AAT04112.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47017682|gb|EAL08478.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes str. 4b H7858]
 gi|293593859|gb|EFG01620.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300513877|gb|EFK40942.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL N1-017]
 gi|328468603|gb|EGF39603.1| DNA polymerase III PolC [Listeria monocytogenes 1816]
          Length = 1444

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL 
Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLE 542

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFK 186
           +AR  +P    + LN+L K++ I +     H A+ D+   + +  K++    ++ N  F 
Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHNIDFH 600

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211
            + + +  E           KR +P
Sbjct: 601 DSLNDYMGEGDAY-------KRARP 618


>gi|306830212|ref|ZP_07463396.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
 gi|304427738|gb|EFM30834.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
          Length = 1463

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|282600891|ref|ZP_06257782.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM
           15176]
 gi|282571272|gb|EFB76807.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM
           15176]
          Length = 1347

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 21/230 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGLDS  + + EIGAV + +      + F  F+ P G+    + ++L GI D
Sbjct: 321 FVVFDTETTGLDSNVEALTEIGAVYVENGKINEEKKFCTFVNP-GKPIPQKVVELTGIND 379

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126
             + D P+       F +F  +     +AHNA  FD+ FI    ++      D +  IDT
Sbjct: 380 AMVADAPTPEEAIRAFKEFCGDH--VLVAHNAHSFDMLFIRKAGEKAGIS-FDENTYIDT 436

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ----- 180
           L + +   P  RN  L+++ K   I   +   H A+ D+  L+ ++  M+    +     
Sbjct: 437 LPMGQALFPGLRNYKLDTINKHLEIPPFNH--HRAVDDAMALARIFEVMLNDLQEKDIPT 494

Query: 181 ---INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
              IN G   N++   K+    +  +      K L+  ++      H + 
Sbjct: 495 VEAINTGLGGNKEVLKKKYYHLIILVQNQVGLKNLYRIVS----AAHTQY 540


>gi|228964616|ref|ZP_04125724.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228795047|gb|EEM42545.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 365

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|229102245|ref|ZP_04232954.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-28]
 gi|228681146|gb|EEL35314.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-28]
          Length = 934

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+      +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPVFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|82523686|emb|CAI78468.1| Rad3-related DNA helicases [uncultured candidate division WS3
           bacterium]
          Length = 965

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 10/203 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG+DS+ DRIIE+GAV ++D      TF+ F+ P G     + + L GI+D 
Sbjct: 28  FVGLDLETTGVDSRVDRIIEVGAVRVVDGR-VADTFESFVNP-GCPIPSDIVHLTGISDA 85

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+   +     +F     +  +AH+A FD GF++          +    + DTL 
Sbjct: 86  DVAGAPTIDEVLPRIIEFIG--GSPIVAHHAPFDTGFLDEAAGGRPGLLVGRGGVFDTLP 143

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           + R   P    + L +  + + I       H A  D+  +SD+++ ++    QI     T
Sbjct: 144 LTRALLPRLPNHRLATAARFFDIPT--GRSHRATDDARAVSDLFLALLGVLDQIG---AT 198

Query: 188 NEDRFFKEEKKTVPNISLLKRDK 210
             DR ++        +    R++
Sbjct: 199 VLDRMYRLADTATRTLIEAARER 221


>gi|46202557|ref|ZP_00053013.2| COG5002: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 711

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 10/181 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64
           +  +VFD ETTGL   + D+I+ I  V +++       +F   + P GR    E+++ HG
Sbjct: 516 LTFVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNP-GRSIPAESIRYHG 574

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITDE + DKP    +  +F  +    +A  +AHNA FD+ F+    + +      P  ++
Sbjct: 575 ITDEMVIDKPPAGVVLPQFRSYVA--DAVLVAHNAAFDLKFLRMREKEMGVRFDSP--VL 630

Query: 125 DTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           DT+ ++     P + + L+ +C+RYGI I+ R  H AL DS + + V ++ +        
Sbjct: 631 DTMILSNFLDGPEAGHSLDDICERYGIEITDR--HTALGDSMVTAAVLLRQIEALEGRGI 688

Query: 184 G 184
            
Sbjct: 689 H 689


>gi|157150704|ref|YP_001451113.1| DNA polymerase III PolC [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075498|gb|ABV10181.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 1462

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 417 MALSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++      +  EF +F   Q++  +AHNA FDVGF+N   +R    P    
Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|213021700|ref|ZP_03336147.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213612768|ref|ZP_03370594.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 164

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 94/158 (59%), Gaps = 11/158 (6%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSK 157
                D+L++AR+  P  RN L++LC RY I  S R+ 
Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTL 164


>gi|311068754|ref|YP_003973677.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus atrophaeus 1942]
 gi|310869271|gb|ADP32746.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus atrophaeus 1942]
          Length = 930

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 9/182 (4%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            NK R +V D+ETTG    K D+II+I AV + +   T R F  ++ PN +       +L
Sbjct: 1   MNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPFFIEQL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT+  ++++  F ++  E +   +   A ++AHN  FD+GF+  EL       L    
Sbjct: 59  TGITNSMVENEQPFEAVAEEVFQLLD--GAYFVAHNIHFDLGFVKYELNEAGFR-LPDCE 115

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++DT+ ++R  +P      L  L +   + + H + H A  D+ +   +++K++    ++
Sbjct: 116 VLDTVELSRIVYPGFEGYKLTELSEE--LQLKHENPHRADSDAEVTGFIFLKIIDKLQRL 173

Query: 182 NF 183
             
Sbjct: 174 PL 175


>gi|315611914|ref|ZP_07886833.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
 gi|315316092|gb|EFU64125.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
          Length = 1463

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|229058278|ref|ZP_04196665.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH603]
 gi|228720049|gb|EEL71635.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH603]
          Length = 934

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+      +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPLFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            ++ +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DEDLVKQAPLFRDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEVH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|322375786|ref|ZP_08050297.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C300]
 gi|321279054|gb|EFX56096.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C300]
          Length = 1463

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   +N   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KNTVLVAHNATFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|323496243|ref|ZP_08101301.1| DNA polymerase III, alpha subunit [Vibrio sinaloensis DSM 21326]
 gi|323318520|gb|EGA71473.1| DNA polymerase III, alpha subunit [Vibrio sinaloensis DSM 21326]
          Length = 204

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 89/191 (46%), Gaps = 11/191 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   +    +V D ETTGL     DR IEIGAV+L++  +   TFQ  + P G + S   
Sbjct: 1   MTHAHS--VVVLDFETTGLSPNMGDRAIEIGAVKLVNG-EVVDTFQQLMNP-GFRVSAFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT++ L   PS   + +EF DF   +N   +AHNA FD  F++ EL+R+      
Sbjct: 57  EGYTGITNQMLSGAPSCDEVMTEFADFIRGEN--LVAHNASFDKRFLDDELERVKV--AY 112

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 +L I+RR H     + L  + +   I       H AL D+ + + +++ M+   
Sbjct: 113 RGEFACSLLISRRLHQDAPSHKLGDIVRYKHIENDG-VFHRALADAQVTAKLWMVMVNDL 171

Query: 179 SQINFGFKTNE 189
            Q      + E
Sbjct: 172 QQRGIAQPSFE 182


>gi|313608987|gb|EFR84729.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL F2-208]
          Length = 1447

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 94/182 (51%), Gaps = 8/182 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I        VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + 
Sbjct: 424 IALQDATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTIN 481

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K       +   F ++  +     +AHNA FD+GFIN   +++  +  + +
Sbjct: 482 LTGITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-N 538

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DTL +AR  +P    + LN+L K++ I +     H A+ D+   + +  K++    +
Sbjct: 539 AVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKE 596

Query: 181 IN 182
           ++
Sbjct: 597 MH 598


>gi|217964533|ref|YP_002350211.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes HCC23]
 gi|217333803|gb|ACK39597.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes HCC23]
 gi|307570901|emb|CAR84080.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes L99]
          Length = 1443

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 94/182 (51%), Gaps = 8/182 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I        VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + 
Sbjct: 420 IALQDATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTIN 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K       +   F ++  +     +AHNA FD+GFIN   +++  +  + +
Sbjct: 478 LTGITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-N 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DTL +AR  +P    + LN+L K++ I +     H A+ D+   + +  K++    +
Sbjct: 535 AVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKE 592

Query: 181 IN 182
           ++
Sbjct: 593 MH 594


>gi|322386941|ref|ZP_08060565.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
 gi|321269223|gb|EFX52159.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
          Length = 1462

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++      +  EF +F   Q++  +AHNA FDVGF+N   +R    P    
Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PQITQ 531

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|295395939|ref|ZP_06806124.1| nuclease subunit of the excinuclease complex [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971212|gb|EFG47102.1| nuclease subunit of the excinuclease complex [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 560

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 9/211 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + +   V D+ETTG +S    I EIGAV+          FQ  + P     SP   +L 
Sbjct: 10  LHDVTFTVVDLETTGANSAQGDITEIGAVKSRGGEIIGE-FQTLVRPTRSVISPFVERLT 68

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT+  +   P  +S+   F +F     +  +AHNA FDVGF+     R++  P     +
Sbjct: 69  GITNSMVATAPELASVIPMFLEF--AHGSILVAHNAGFDVGFLKEACARLDY-PWPGYEV 125

Query: 124 IDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DT+ +AR    +     + L +L   + +       H AL D+     +   M      
Sbjct: 126 VDTVRLARLCVTRQEVRNHKLGTLATFFNVPTP--PTHRALDDARATHHILQSMFELFGA 183

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
           +      +     ++  K   +   L  D P
Sbjct: 184 VGVTTFEDLQGLKQQGWKVRQSKKHLAHDVP 214


>gi|313899185|ref|ZP_07832705.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. HGF2]
 gi|312956008|gb|EFR37656.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. HGF2]
          Length = 1448

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 114/240 (47%), Gaps = 17/240 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K    VFD+ETTGL S+ D IIE G   + D +   ++ Q+F+ P     S    +
Sbjct: 391 IELEKGTYCVFDLETTGLSSRFDHIIEFGGQIVKDRACI-KSLQLFIKPPVA-LSAFTTE 448

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT+E +K+  SF+    E  DF    ++  +AHNA FD  F+N EL RI + P+  +
Sbjct: 449 LTGITEEHMKNAKSFADSIDEILDFIG--DSILVAHNATFDYNFLNDELARIGRPPI-MN 505

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL +AR      +   L  + + YGI       H A  D+ +L+  Y+ M+     
Sbjct: 506 PVIDTLDLARSMQADRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLAQTYMNMLNDLKH 565

Query: 181 INFGFKTNEDRFFKEE--KKTVPNISLLKRD----KPLFTRITKEELDEHDKTIQTLGKN 234
           I    +  +D    E   K  V ++++L ++    K LF  +T      H   +    K+
Sbjct: 566 IK-NLQELQDMQTAESFRKVRVKHVTILAKNMAGLKELFELVTLS----HTSYLAYSSKS 620


>gi|254505589|ref|ZP_05117736.1| DNA polymerase III PolC-type [Vibrio parahaemolyticus 16]
 gi|219551706|gb|EED28684.1| DNA polymerase III PolC-type [Vibrio parahaemolyticus 16]
          Length = 204

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   N    +V D ETTGL     DR IEIGAV+L++  +   TFQ  + P G + S   
Sbjct: 1   MSLANS--VVVLDFETTGLSPNMGDRAIEIGAVKLVNG-EVVDTFQQLMNP-GFRVSSFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+  L+D PS   + ++F  F   +N   +AHNA FD  F++ EL+R+N     
Sbjct: 57  EGYTGITNVMLRDAPSCDEVMAQFAQFIAGEN--LVAHNASFDKRFLDDELERVN--AAY 112

Query: 120 PSRIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 +L ++RR    +  + L  L +   I       H AL D+ + + +++ M+
Sbjct: 113 SGEFACSLLVSRRLNQDAPSHKLGDLVRFKQIDNDG-VFHRALADAEMTAKLWMLMV 168


>gi|229166488|ref|ZP_04294244.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH621]
 gi|228617062|gb|EEK74131.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH621]
          Length = 934

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+      +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPLFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            ++ +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DEDLVKQAPLFRDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEVH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|226307078|ref|YP_002767038.1| DNA polymerase III epsilon subunit [Rhodococcus erythropolis PR4]
 gi|226186195|dbj|BAH34299.1| putative DNA polymerase III epsilon subunit [Rhodococcus
           erythropolis PR4]
          Length = 586

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 93/212 (43%), Gaps = 17/212 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              ++   +V D+ETTG  +  D I EIGAV++             + P GR   P  ++
Sbjct: 34  TPLSETTFVVVDLETTGGSADQDSITEIGAVKIRGGEVLGE-MATLVDP-GRSIPPYIVE 91

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT   L   P    +   F +F   + A  +AHNA FD+GF+ A   R  + P    
Sbjct: 92  LTGITTAMLIGAPPIERVLPAFLEF--AEGAVLVAHNAPFDIGFLKAAASRSAR-PWPSF 148

Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           R++ T+ +ARR           L++L   + +T   +  H AL D+    DV   ++   
Sbjct: 149 RVLCTVKLARRVLTRDEAPSVKLSALAHLFQVTT--QPTHRALDDARATVDVLHGLI--D 204

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
              N G  +     + E    +PNIS  +R K
Sbjct: 205 RVGNQGVHS-----YSELVDYLPNISSHQRAK 231


>gi|332359305|gb|EGJ37126.1| DNA polymerase III PolC [Streptococcus sanguinis SK49]
          Length = 1462

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 417 MALSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++      +  EF +F   Q++  +AHNA FDVGF+N   +R    P    
Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|307709855|ref|ZP_07646304.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK564]
 gi|307619404|gb|EFN98531.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK564]
          Length = 1463

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R     +   
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGLSKIS-Q 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|296129915|ref|YP_003637165.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM
           20109]
 gi|296021730|gb|ADG74966.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM
           20109]
          Length = 631

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 89/199 (44%), Gaps = 12/199 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              + +  +V D+ETTG  +  D I EIGAV++         FQ  + P G    P    
Sbjct: 57  TPLSDVTFVVVDLETTGGRAAEDAITEIGAVKVRGGEVLGE-FQTLVDPGG-PVPPFIQV 114

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT   L   P+   +   F +F   + A  +AHNA FDVGF+ A   R  +      
Sbjct: 115 LTGITTSMLVGAPTIGEVLPSFLEF--ARGAVLVAHNAPFDVGFLRAAAARS-ERAWPGF 171

Query: 122 RIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +++DT+ +ARR   +  +  + L++L   +G T++    H AL D+    DV   ++  G
Sbjct: 172 QVVDTVRLARRVVLRDEAPNHKLSTLAALFGATVT--PNHRALADARATVDVLHALL--G 227

Query: 179 SQINFGFKTNEDRFFKEEK 197
                G    ED     + 
Sbjct: 228 RLAPLGVTHLEDLATATDP 246


>gi|295398912|ref|ZP_06808894.1| DnaQ family exonuclease/DinG family helicase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978378|gb|EFG53974.1| DnaQ family exonuclease/DinG family helicase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 921

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 9/180 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K R ++ D+ETTG    K DRII++G V + +     R F  F  P  R   P   +L  
Sbjct: 2   KDRFVIMDLETTGNVPKKGDRIIQLGMVVVENGQIIER-FSSFFNPE-RDIPPFVQQLTN 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I ++ + D P F+   ++  D    Q + ++AHN  FD+ F+  EL      P      I
Sbjct: 60  INEQMVADAPVFAEEAAKVVDML--QQSYFVAHNVSFDLQFLQEELHMAGFPPFS-GPTI 116

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           DT+ +AR   P      L  L K   I  +H   H A  D+ + + ++I ++    Q+  
Sbjct: 117 DTVELARIVFPDAESYKLADLAKLLCI--AHDQPHHADSDAEVTAKLFIALLDRLRQLPL 174


>gi|332365809|gb|EGJ43566.1| DNA polymerase III PolC [Streptococcus sanguinis SK355]
          Length = 1462

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSVFTTD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++      +  EF +F   +++  +AHNA FDVGF+N   +R    P    
Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--KDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|240146656|ref|ZP_04745257.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82]
 gi|257201200|gb|EEU99484.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82]
          Length = 226

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 15/180 (8%)

Query: 3   RKNKMR------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           RK K R       +++D+ETTG+ S  D +IEI AV++ +    +  F   + P GR   
Sbjct: 5   RKGKQRREYVRDYVLYDLETTGISSLYDEVIEISAVKVRNGKIVDE-FSELVNP-GRPIP 62

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINK 115
             A  ++ I+D+ +++  SF  +  EF  F  +       HN   FD+ F+  + ++   
Sbjct: 63  YAASSVNNISDKMVENARSFEKVLPEFLAFAGDD--VLAGHNIAGFDMKFLYRDCEKYFG 120

Query: 116 DPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             L  +  IDTL+IA+   P  ++  L+ L + YGI  S +  H AL D  +   V+  M
Sbjct: 121 QTL-TNDYIDTLAIAKLCFPEWKHRKLSDLAEHYGI--STKGAHRALADCRMNQQVFELM 177


>gi|315924481|ref|ZP_07920702.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622185|gb|EFV02145.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 1442

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 9/190 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL +  D IIEI AV++ +      TFQ F+ P+ R    +  +L  ITD+
Sbjct: 427 FVFFDLETTGLYAGRDAIIEIAAVKIKN-KHVLDTFQTFVNPH-RPIPQKITELTSITDQ 484

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +       +    F DF +       AHNA FD+GF++  L+R      +    +DTL 
Sbjct: 485 MVAQGKEEEAAVRAFLDFCD--GKILAAHNASFDMGFMSIALERYGIP--NTITYVDTLP 540

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR   P  +R++L  L   + I + H   H A+ DS   + +++++M    + +     
Sbjct: 541 MARTLIPDIARHNLKKLASYFKIDMGHH--HRAIDDSICSAKIFVRLMGLAEKQHCDRAA 598

Query: 188 NEDRFFKEEK 197
           + +R  + E+
Sbjct: 599 DLNRLMRLEQ 608


>gi|169833032|ref|YP_001693801.1| DNA polymerase III PolC [Streptococcus pneumoniae Hungary19A-6]
 gi|168995534|gb|ACA36146.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae Hungary19A-6]
          Length = 1463

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 8/169 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L 
Sbjct: 420 LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELT 477

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P     +
Sbjct: 478 GITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQPV 534

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 535 IDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|168485959|ref|ZP_02710467.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1087-00]
 gi|183570911|gb|EDT91439.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1087-00]
          Length = 1463

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSVFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|154484062|ref|ZP_02026510.1| hypothetical protein EUBVEN_01771 [Eubacterium ventriosum ATCC
           27560]
 gi|149735104|gb|EDM50990.1| hypothetical protein EUBVEN_01771 [Eubacterium ventriosum ATCC
           27560]
          Length = 237

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 89/190 (46%), Gaps = 9/190 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIET+G+  K D+IIEIGAV++ D    + TF   + P G K SP   +L GITDE
Sbjct: 5   YVCVDIETSGIRVKWDKIIEIGAVKVRDGKAVD-TFSELINP-GLKLSPYITELTGITDE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKDKP    +   F +F  +     + HN  FD  F+      IN+        IDTL 
Sbjct: 63  MLKDKPFIEEVLPRFIEFAGDD--VIMGHNIMFDYSFLKQNA--INQKLKFDKMGIDTLK 118

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           IAR+         L  LC  YGI  +  + H A  D+ + S +Y  +M      + G   
Sbjct: 119 IARKTLKGLESRGLEYLCNYYGI--ADENHHRAFNDAEVTSKLYNVLMEKFGTESPGLFE 176

Query: 188 NEDRFFKEEK 197
                FK +K
Sbjct: 177 PYQLVFKAKK 186


>gi|332799219|ref|YP_004460718.1| DNA polymerase III subunit alpha [Tepidanaerobacter sp. Re1]
 gi|332696954|gb|AEE91411.1| DNA polymerase III, alpha subunit [Tepidanaerobacter sp. Re1]
          Length = 1422

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTGL   ND IIEIGAV++L+    +R F  F+ P  R      + L GIT++
Sbjct: 408 FVVVDIETTGLCFDNDEIIEIGAVKILNNEIIDR-FSSFIKPQ-RLIPTNIINLTGITND 465

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK       +   F +F    +  ++AHNA+FD GFI  E  ++       + I+DTL+
Sbjct: 466 MLKTARPIEKVLPSFMEFLG--DGVFVAHNAEFDSGFIRREASKLGIPF--KNNILDTLA 521

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +AR        + L++L K   I +   S H A+ D+   + +  ++++  ++   
Sbjct: 522 LARIIFSKLKNHRLDTLAKELNIKM--GSHHRAIDDAKTAALILQELLIKVNEAGI 575


>gi|312110481|ref|YP_003988797.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y4.1MC1]
 gi|311215582|gb|ADP74186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y4.1MC1]
          Length = 921

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 9/180 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K R ++ D+ETTG    K DRII++G V + +     R F  F  P  R   P   +L  
Sbjct: 2   KDRFVIMDLETTGNVPKKGDRIIQLGMVVVENGQIIER-FSSFFNPE-RDIPPFVQQLTN 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I ++ + D P F+   ++  D    Q + ++AHN  FD+ F+  EL      P      I
Sbjct: 60  INEQMVADAPVFAEEAAKVVDML--QQSYFVAHNVSFDLQFLQEELHMAGFPPFS-GPTI 116

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           DT+ +AR   P      L  L K   I  +H   H A  D+ + + ++I ++    Q+  
Sbjct: 117 DTVELARIVFPDAESYKLADLAKLLCI--AHDQPHHADSDAEVTAKLFIALLDRLRQLPL 174


>gi|322388734|ref|ZP_08062331.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
 gi|321140353|gb|EFX35861.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
          Length = 1464

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 419 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNIIAE-FDEFINP-GHPLSAFTTE 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 477 LTGITDDHVKNAKPLVQVLKEFQEFC--KDTVLVAHNASFDVGFMNANYERHGL-PKITQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 582


>gi|256617164|ref|ZP_05474010.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|256596691|gb|EEU15867.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
          Length = 1440

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 62/213 (29%), Positives = 100/213 (46%), Gaps = 17/213 (7%)

Query: 2   IRKNKMRKIVFDIETT-GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           I       +VFD+ETT GL +  D IIE+ AV++   +    TF+ F+ P G   S   +
Sbjct: 407 IELTDATYVVFDVETTTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTI 464

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITDE ++   S   +   F +F   +    +AHNA FD+GF+N    +    P   
Sbjct: 465 NLTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAA 521

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGG 178
           + +IDTL ++R  +P    + LN+L K++G+ +     H A+ DS     + +I +    
Sbjct: 522 NPVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAK 579

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
              +  F  + +R   E           KR +P
Sbjct: 580 ENHDMHFHDDLNRHIGEGDSY-------KRARP 605


>gi|313638095|gb|EFS03362.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri FSL S4-171]
          Length = 1444

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 8/182 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I        VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + 
Sbjct: 421 ILLKDATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTIN 478

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K       +   F ++    +   +AHNA FD+GFIN   +++   P   +
Sbjct: 479 LTGITDDMVKGSDPIDVVLKRFKEW--SADDILVAHNASFDMGFINTAYEKVGI-PKAEN 535

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DTL +AR  +P    + LN+L K++ I +     H A+ D+   + +  K++    +
Sbjct: 536 AVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLGWKLIKDAKE 593

Query: 181 IN 182
           ++
Sbjct: 594 MH 595


>gi|260434020|ref|ZP_05787991.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417848|gb|EEX11107.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 470

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 7/174 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
            +++  +VFD ETTGL    D I++IGAV ++         F   + P G    P + ++
Sbjct: 273 LSQLCFVVFDTETTGLLPHKDEIVQIGAVRVVKGRIVEGEQFDTLVNP-GIPIPPASTRV 331

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H ++D  ++D P   +   +F  F   ++A  +AHNA FD+ F+    +R+  +   P  
Sbjct: 332 HKVSDRMVQDAPDIITAGRQFHHF--ARDAVIVAHNAPFDMAFLRRHAKRMEVEWDHP-- 387

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           I+DT+ ++     +S  + L++LC R GI I    +H AL D+   ++  ++M+
Sbjct: 388 ILDTVLLSAVLFGASETHTLDALCDRLGIEIPETLRHTALGDAVATAEALVRML 441


>gi|262283487|ref|ZP_06061253.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
 gi|262260978|gb|EEY79678.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
          Length = 1462

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 417 MALSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++  S   +  EF +F   Q++  +AHNA FDVGF+N   +R    P    
Sbjct: 475 LTGITDEHVRNAKSLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|313633403|gb|EFS00239.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri FSL N1-067]
          Length = 1452

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 8/182 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I        VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + 
Sbjct: 429 ILLKDATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTIN 486

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K       +   F ++    +   +AHNA FD+GFIN   +++   P   +
Sbjct: 487 LTGITDDMVKGSDPIDVVLKRFKEW--SADDILVAHNASFDMGFINTAYEKVGI-PKAEN 543

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DTL +AR  +P    + LN+L K++ I +     H A+ D+   + +  K++    +
Sbjct: 544 AVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLGWKLIKDAKE 601

Query: 181 IN 182
           ++
Sbjct: 602 MH 603


>gi|159046099|ref|YP_001534893.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
 gi|157913859|gb|ABV95292.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
          Length = 485

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 8/176 (4%)

Query: 3   RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60
           +   ++ ++FD ETTGL   + D + +I A  +++        F   + P GR     A 
Sbjct: 285 KLGDLKYVIFDTETTGLLPERGDEVCQIAACRVVNGKMVKTEMFDTLVNP-GRPIPLSAT 343

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGITD  + D P F +    F  F     A  IAHNA FD+ F   +   I      P
Sbjct: 344 NIHGITDAMVADAPDFLTAGRAFHGF--ADGAVLIAHNAPFDMAFFYRKQAEIGARFDHP 401

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             ++DT+ ++   +    ++ L++L +R  +TI   ++H AL D+   ++V++K++
Sbjct: 402 --VLDTVLLSAVIYGQTEQHSLDALAERLNVTIPEEARHTALGDALATTEVFLKLL 455


>gi|116672512|ref|YP_833445.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24]
 gi|116612621|gb|ABK05345.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24]
          Length = 406

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 100/250 (40%), Gaps = 21/250 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL   N RI EI  V +      +  ++  + P  R   P+   +HGI   
Sbjct: 5   FAVVDVETTGLFPGNHRIAEIAVVHVDPDGTVSNRWETLVNPQ-RDLGPQ--HIHGIRAA 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127
            +   P F  I  +  +    +    +AHN  FD  F++ EL R   + P +    + T+
Sbjct: 62  DILHAPVFGDIAHDVMELLAGR--VLVAHNVHFDYRFVSHELGRAGLELPFEVHDCLCTM 119

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            +ARR  P +   L   C  +G+ +++   H A  D+   + V    +   S     F  
Sbjct: 120 KLARRYLPGAGRSLKDCCDSFGLNLAN--AHSAGDDAEAAAHVLSNYLRMDSGNPEWFSA 177

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP-----------LFTRITK-EELDEHDKTIQTLGKNA 235
            +  +F       P        +P           L  R+ +    DEH+  +  L + A
Sbjct: 178 LDRAYFSSWPAVEPKRRQPALRRPAGEPQTHFLERLVNRLPEVAGPDEHNAYLAMLDR-A 236

Query: 236 IWDRYISSNQ 245
           + DR IS ++
Sbjct: 237 LMDRQISVSE 246


>gi|309776025|ref|ZP_07671017.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916307|gb|EFP62055.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 1271

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 115/240 (47%), Gaps = 17/240 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K    VFD+ETTGL S+ D IIE G   + D +   ++ Q+F+ P     S    +
Sbjct: 214 IELEKGTYCVFDLETTGLSSRFDHIIEFGGQIVKDRACI-KSLQMFIKPPVA-LSAFTTE 271

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT+E +K+  SF+    E  DF    ++  +AHNA FD  F+N EL RI + P+  +
Sbjct: 272 LTGITEEHMKNAKSFADSIDEILDFIG--DSILVAHNATFDYNFLNDELARIGRKPI-MN 328

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL +AR      +   L  + + YGI       H A  D+ +L+  Y+ M+     
Sbjct: 329 PVIDTLDLARSMQADRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLAQTYMNMLNDLKH 388

Query: 181 INFGFKTNEDRFFKEE--KKTVPNISLLKRD----KPLFTRITKEELDEHDKTIQTLGKN 234
           I    +  +D    E   K  V ++++L ++    K LF  +T      H K +    K+
Sbjct: 389 IK-NLQELQDMQTAESFRKVRVKHVTVLAKNMAGLKELFELVTLS----HTKYLAYSSKS 443


>gi|161986630|ref|YP_445565.2| hypothetical protein SRU_1441 [Salinibacter ruber DSM 13855]
          Length = 563

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 11/176 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG    +DRI+EIGAV++ D S  +R FQ  + P  +       K+ GIT  
Sbjct: 8   FVVTDLETTGTTPDDDRIMEIGAVKVRDGSVVDR-FQQLVNPQ-QSVPGRITKMTGITTG 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P    +  ++  F    +   +AHN  FD  F++AELQR+  + L P+  + T+ 
Sbjct: 66  MVFEAPPADEVLPDYRAFLG--DGILVAHNVSFDGSFLDAELQRMGDETL-PNETLCTVR 122

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +ARR  P   +  L+ L + Y I +  R  H AL D+   S V  + +   SQ+ F
Sbjct: 123 LARRLLPGLDSKGLSRLAQFYDIDVEGR--HRALGDAEATSVVLRRFV---SQLAF 173


>gi|289434601|ref|YP_003464473.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170845|emb|CBH27387.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 1444

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 8/182 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I        VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + 
Sbjct: 421 ILLKDATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTIN 478

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K       +   F ++    +   +AHNA FD+GFIN   +++   P   +
Sbjct: 479 LTGITDDMVKGSDPIDVVLKRFKEW--SADDILVAHNASFDMGFINTAYEKVGI-PKAEN 535

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DTL +AR  +P    + LN+L K++ I +     H A+ D+   + +  K++    +
Sbjct: 536 AVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLGWKLIKDAKE 593

Query: 181 IN 182
           ++
Sbjct: 594 MH 595


>gi|229010951|ref|ZP_04168147.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM
           2048]
 gi|229132450|ref|ZP_04261304.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST196]
 gi|228651156|gb|EEL07137.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST196]
 gi|228750351|gb|EEM00181.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM
           2048]
          Length = 934

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+      +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPLFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DENLVKQAPLFRDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEVH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|221231173|ref|YP_002510325.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
 gi|220673633|emb|CAR68120.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
          Length = 1463

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 8/164 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L GITD+
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P     +IDTL 
Sbjct: 483 HVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQPVIDTLE 539

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 540 FARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|328948895|ref|YP_004366232.1| DNA polymerase III subunit epsilon [Treponema succinifaciens DSM
           2489]
 gi|328449219|gb|AEB14935.1| DNA polymerase III, epsilon subunit [Treponema succinifaciens DSM
           2489]
          Length = 216

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 13/187 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD ETTGL ++ + IIEIGAV+          F + + P   +       L  ITD+
Sbjct: 22  FVAFDTETTGLKAEKEFIIEIGAVKFNCDGIIGEPFDILIKPPI-ELPQFIKDLTHITDK 80

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P       +F +F   +    +AHNA+FD+GFIN+EL+R +   L P+  IDTL+
Sbjct: 81  MISCCPCAKEAVPQFLNFVGGKETVLVAHNAQFDLGFINSELKRFSHPEL-PNVCIDTLN 139

Query: 129 IARRKHPS-------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGS 179
            +R  +P         +  L SL KR+GI    ++ H A  D+ L  +++ +++      
Sbjct: 140 ASRWAYPDFIKEQEKGQYKLQSLAKRFGIE--AKAAHRANDDARLCMEIFKRIISDTMDK 197

Query: 180 QINFGFK 186
           Q NF   
Sbjct: 198 QKNFSID 204


>gi|312883799|ref|ZP_07743518.1| DNA polymerase III, alpha subunit [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368548|gb|EFP96081.1| DNA polymerase III, alpha subunit [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 204

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 62/202 (30%), Positives = 94/202 (46%), Gaps = 13/202 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M + +    +V D ETTGL     DR IEIGAV+L+D    + +FQ  + P G + S   
Sbjct: 1   MTQASS--VVVLDFETTGLSPNMGDRAIEIGAVKLVDGQVVD-SFQRLMNP-GFRVSTFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+  L+  PS   + + F  F   +N   IAHNA FD  F++AEL+R+N     
Sbjct: 57  EGYTGITNNMLRTAPSCDEVMTSFSQFIAGEN--LIAHNASFDKRFLDAELERVNCG--Y 112

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 +L +ARR       + L  L +   I       H AL D+ + + +++ M+   
Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRHRNIENDG-VFHRALADAQVTAKLWLLMVEEL 171

Query: 179 SQINFGFKTNEDRFFKEEKKTV 200
            Q  +G  +    F +   KT 
Sbjct: 172 EQ--YGITSPSFTFMQRISKTA 191


>gi|302525360|ref|ZP_07277702.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
 gi|302434255|gb|EFL06071.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
          Length = 572

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 85/210 (40%), Gaps = 13/210 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
                   +VFD+ETTG     D I EIGAV++         F   + P G    P+ ++
Sbjct: 19  TPLRDTTFVVFDLETTGTKPGPDGITEIGAVKVRAGQVLGE-FATLVNP-GTPIPPQIVE 76

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT   + D P    +   F +F +   A  +AHN+ FD  F+ A  +        P 
Sbjct: 77  LTGITQAMVYDAPRIERVLPAFLEFIS--GAVLVAHNSGFDTSFMKAACEGHGYVWPRP- 133

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++ T+ +ARR  P               +    R  H AL D+   +DV   ++     
Sbjct: 134 TVVCTVKLARRVIPREEARSYRLSSLSMLLGSRTRPTHRALDDARATTDVLHALLERVG- 192

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
            N G  T E+         +P+++  +R K
Sbjct: 193 -NLGVHTVEELI-----DYLPDVTPAQRRK 216


>gi|188518224|ref|ZP_03003759.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188998138|gb|EDU67235.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
          Length = 1442

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 5/173 (2%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +    ++FDIETTGL    D IIE GA+ + +  +     Q F+ P  ++ +     L
Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNL 461

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
             I+ E + D     +   +  + F   N   +AHN   FD+ FIN  L +   +PL  +
Sbjct: 462 TNISQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPL-KN 518

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDTL I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M
Sbjct: 519 PSIDTLMISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIM 571


>gi|153833352|ref|ZP_01986019.1| DNA polymerase III, alpha subunit [Vibrio harveyi HY01]
 gi|148870361|gb|EDL69287.1| DNA polymerase III, alpha subunit [Vibrio harveyi HY01]
          Length = 204

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 11/182 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M + N    +V D ETTGL     DR IEIGAV+++D  +   +FQ  + P G + S   
Sbjct: 1   MPQANS--VVVLDFETTGLSPNMGDRAIEIGAVKIVDG-EVVDSFQQLMNP-GFRVSSFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+  L+  PS   + + F +F   +N   IAHNA FD  F++ EL+RI+     
Sbjct: 57  EGYTGITNNMLRTAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDTELERIDCG--Y 112

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 +L +ARR       + L  L +   I       H AL D+ + + +++ M+   
Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIENDG-VFHRALADAQVTAKLWLLMVEEL 171

Query: 179 SQ 180
            Q
Sbjct: 172 EQ 173


>gi|163939458|ref|YP_001644342.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus weihenstephanensis KBAB4]
 gi|163861655|gb|ABY42714.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           weihenstephanensis KBAB4]
          Length = 934

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+      +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPLFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +K  P F  +     +    Q A ++AHN  FD  F+N EL++     +     ID
Sbjct: 62  DENLVKQAPLFRDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEVH-CPKID 118

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167


>gi|268610447|ref|ZP_06144174.1| DNA polymerase III, alpha subunit [Ruminococcus flavefaciens FD-1]
          Length = 1441

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 96/183 (52%), Gaps = 11/183 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGL+ + DR+ EIGAV+L +  +   +F   + P  +    +  +L GI+D  
Sbjct: 426 IVFDVETTGLNFRTDRLTEIGAVKLKN-LQVVDSFNTKVNPE-KPIPEKITELTGISDAD 483

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +KD P  +     F +F  ++    IAHNA++D   IN   +R N D       +DTL +
Sbjct: 484 VKDAPHEAEALRMFMEFCGDKP-VLIAHNARYDTNMINQVCKRQNIDF--DYTWVDTLVM 540

Query: 130 ARRKHP-SSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            +   P   R+ LN + K+  +    H   H A  D+ +L+ +YI++  G  + + GFK+
Sbjct: 541 CQSMLPEMGRHKLNLVAKQLKLGKFDH---HRASDDALMLAKIYIEL-AGRLKNDRGFKS 596

Query: 188 NED 190
             +
Sbjct: 597 LNE 599


>gi|225856031|ref|YP_002737542.1| DNA polymerase III PolC [Streptococcus pneumoniae P1031]
 gi|225725805|gb|ACO21657.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae P1031]
          Length = 1463

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 8/169 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L 
Sbjct: 420 LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GYPLSAFTTELT 477

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P     +
Sbjct: 478 GITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQPV 534

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 535 IDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|295107656|emb|CBL05199.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 445

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 107/208 (51%), Gaps = 19/208 (9%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + I FD+ETTGL    DRI+EIGA+   D  K  R+F   + P G + S EA +++ I
Sbjct: 5   KSKFIAFDVETTGLSEYADRIVEIGAICFEDR-KPMRSFSTLVNP-GVRISVEASRINHI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           ++E L + PS +  + +F +F  +    N+   AHNA+FD+GF+   L+R+         
Sbjct: 63  SNEMLGNAPSENQAYEQFVEFLGDALAGNSILCAHNARFDMGFLKNTLERLGYSGTIN-- 120

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +DTLS++RR           ++ + + I  +  ++H A  D+ +   ++ K+   G Q 
Sbjct: 121 YVDTLSLSRRLISDLPNYKQPTVAQYFNIQNN--AEHRAYGDAEVCGMMFCKLASLGEQR 178

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD 209
                         E++ +PN++ ++++
Sbjct: 179 ---------LALNREERGIPNLTDVEKE 197


>gi|291521660|emb|CBK79953.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Coprococcus catus GD/7]
          Length = 245

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 21/235 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL    D IIEIGA++++   K    F  F+ P+ +K + +  +L GITD+
Sbjct: 5   YVVFDLETTGLSPDKDTIIEIGALKVIQG-KVADRFSEFINPH-QKLTQQISELTGITDD 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L    +   +  +F DF   ++   + HN  FD  F     ++ +         IDTL 
Sbjct: 63  MLAGARNLQVVVGDFVDFC--EDYVVVGHNLGFDYRFTKMAAEKYHLPFEHEG--IDTLK 118

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           IA+  H       L +LC+ YGI  S  S H A  D+   + +Y  +          F+T
Sbjct: 119 IAKTVHKDLPSRSLGALCEHYGIINS--SAHRAYHDALATAKLYQTL-------AHYFET 169

Query: 188 NEDRFFKEEK---KTVPNISLLKRDKPLFTRITKEELDEHDKTIQ--TLGKNAIW 237
           +E + F  EK   K      + K+ K     + K    E +  ++  T+ + + W
Sbjct: 170 SEPKLFVPEKMGFKAKKQQPMTKKQKAYLKDLCKYHKIEFNDAMEQMTMSEASRW 224


>gi|315282169|ref|ZP_07870636.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           marthii FSL S4-120]
 gi|313614186|gb|EFR87863.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           marthii FSL S4-120]
          Length = 1367

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 94/182 (51%), Gaps = 8/182 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I        VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + 
Sbjct: 420 IALQDATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTIN 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K       +   F ++  +     +AHNA FD+GFIN   +++  +  + +
Sbjct: 478 LTGITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-N 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DTL +AR  +P    + LN+L K++ I +     H A+ D+   + +  K++    +
Sbjct: 535 AVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKE 592

Query: 181 IN 182
           ++
Sbjct: 593 MH 594


>gi|188524415|ref|ZP_03004436.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|198273773|ref|ZP_03206307.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|195659873|gb|EDX53253.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|198249528|gb|EDY74310.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
          Length = 1442

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 5/173 (2%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +    ++FDIETTGL    D IIE GA+ + +  +     Q F+ P  ++ +     L
Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNL 461

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
             I+ E + D     +   +  + F   N   +AHN   FD+ FIN  L +   +PL  +
Sbjct: 462 TNISQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPL-KN 518

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDTL I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M
Sbjct: 519 PSIDTLMISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIM 571


>gi|291537849|emb|CBL10960.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis XB6B4]
          Length = 226

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 15/180 (8%)

Query: 3   RKNKMR------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           RK K R       +++D+ETTG+ S  D +IEI AV++ +    +  F   + P GR   
Sbjct: 5   RKGKQRREYVPDYVLYDLETTGISSLYDEVIEISAVKVRNGKIVDE-FSELVNP-GRPIP 62

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINK 115
             A  ++ I+D+ +++  SF  +  EF  F  +       HN   FD+ F+  + ++   
Sbjct: 63  YAASSVNNISDKMVENARSFEKVLPEFLAFAGDD--VLAGHNIAGFDMKFLYRDCEKYFG 120

Query: 116 DPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             L  +  IDTL+IA+   P  ++  L+ L + YGI  S +  H AL D  +   V+  M
Sbjct: 121 QTL-TNDYIDTLAIAKLCFPEWKHRRLSDLAEHYGI--STKGAHRALADCRMNQQVFELM 177


>gi|291537711|emb|CBL10823.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis M50/1]
          Length = 226

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 15/180 (8%)

Query: 3   RKNKMR------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           RK K R       +++D+ETTG+ S  D +IEI AV++ +    +  F   + P GR   
Sbjct: 5   RKGKQRREYVPDYVLYDLETTGISSLYDEVIEISAVKVRNGKIVDE-FSELVNP-GRPIP 62

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINK 115
             A  ++ I+D+ +++  SF  +  EF  F  +       HN   FD+ F+  + ++   
Sbjct: 63  YAASSVNNISDKMVENARSFEKVLPEFLAFAGDD--VLAGHNIAGFDMKFLYRDCEKYFG 120

Query: 116 DPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             L  +  IDTL+IA+   P  ++  L+ L + YGI  S +  H AL D  +   V+  M
Sbjct: 121 QTL-TNDYIDTLAIAKLCFPEWKHRRLSDLAEHYGI--STKGAHRALADCRMNQQVFELM 177


>gi|213965283|ref|ZP_03393480.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
           SK46]
 gi|213952135|gb|EEB63520.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
           SK46]
          Length = 529

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 97/205 (47%), Gaps = 17/205 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGL +KND IIEIGA++     KT  TF  F+ P G +       L GIT  
Sbjct: 23  FVVVDLETTGLKAKNDHIIEIGAIKTR-GGKTIGTFSSFIDP-GMEIPDHITSLTGITTA 80

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P   ++ ++F +F   + + W+AHNAKFD+GF+      +  D   PS ++DTL+
Sbjct: 81  DVETAPQLGTVITQFLEF--ARGSVWVAHNAKFDIGFLRQACTDLGLDWPSPS-VVDTLT 137

Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +ARR           L+ L +  G    +R  H AL D+    DV   +M          
Sbjct: 138 LARRVLDRSQVGSFKLSQLARYVG--SPNRPAHRALDDAIATVDVLHYLME-------RL 188

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
              E +   E     P ++   R K
Sbjct: 189 AVYEVQTASELVHYSPTVAPEVRAK 213


>gi|217077387|ref|YP_002335105.1| DNA polymerase III PolC [Thermosipho africanus TCF52B]
 gi|217037242|gb|ACJ75764.1| DNA polymerase III, alpha subunit, Gram-positive type [Thermosipho
           africanus TCF52B]
          Length = 1365

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 103/212 (48%), Gaps = 17/212 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTG +++ D IIE GAV+  D    + TF+ F+ PN +  +    KL GIT++
Sbjct: 348 YTVFDLETTGTNARFDEIIEFGAVKYKDGKIID-TFKSFVKPN-KDINDFTQKLTGITND 405

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD P    +  +F +F   +    +AHNA FD GFI    +++    L     +DTL 
Sbjct: 406 MLKDAPGIEEVVPKFLEFI--EGTVLVAHNADFDYGFIREVYRKMYDKDLIM-PYLDTLK 462

Query: 129 IARRKHPS--SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +++           L  L + + +    H   H A  D+ + ++++ K++    ++  G 
Sbjct: 463 LSKVILKGKVKSFGLGKLVEYFKLGPFKH---HRAFEDASVTAELFGKLVELLGKM--GI 517

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
           K+  D    +   ++ +I    R K +F  IT
Sbjct: 518 KSLNDINKLKAGTSISSI----RTKRVFNHIT 545


>gi|332202187|gb|EGJ16256.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA41317]
          Length = 1463

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|149011144|ref|ZP_01832449.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764780|gb|EDK71710.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP19-BS75]
          Length = 1463

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|148988015|ref|ZP_01819478.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP6-BS73]
 gi|147926479|gb|EDK77552.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP6-BS73]
          Length = 1463

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|15900208|ref|NP_344812.1| DNA polymerase III PolC [Streptococcus pneumoniae TIGR4]
 gi|111658314|ref|ZP_01409003.1| hypothetical protein SpneT_02000504 [Streptococcus pneumoniae
           TIGR4]
 gi|21263563|sp|Q97SQ2|DPO3_STRPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14971745|gb|AAK74452.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae TIGR4]
          Length = 1463

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|298256053|ref|ZP_06979639.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502091|ref|YP_003724031.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|298237686|gb|ADI68817.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
          Length = 1463

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|194397447|ref|YP_002036972.1| DNA polymerase III PolC [Streptococcus pneumoniae G54]
 gi|194357114|gb|ACF55562.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae G54]
          Length = 1463

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|148973897|ref|ZP_01811430.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3]
 gi|145965594|gb|EDK30842.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3]
          Length = 213

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 66/215 (30%), Positives = 101/215 (46%), Gaps = 14/215 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   +    IV D ETTGL     DR IEIGAV+L++  +   TFQ  + P G + S   
Sbjct: 1   MAPHSADSVIVLDFETTGLSPNMGDRAIEIGAVKLVNG-EVVDTFQQLMNP-GFRVSGFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+  L    S   +  EF DF   Q+++ +AHNA FD  F++AEL  I +D   
Sbjct: 59  EGYTGITNRMLSTAASCGEVMDEFADFI--QDSQLVAHNASFDKRFLDAELDYIGRDY-- 114

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +   ++ IARR    +  + L  L +   I     + H AL DS + + +++ +M+  
Sbjct: 115 NGQFACSMLIARRLIQDAPTHKLGDLVRFKSIDNDG-TFHRALADSEMTARLWL-LMIDE 172

Query: 179 SQINFGFKTNE----DRFFKEEKKTVPNISLLKRD 209
            Q + G          +  K  K  +P + +  RD
Sbjct: 173 LQSDHGIHQPSFQLMQKISKTAKGAIPKLLMSSRD 207


>gi|168493969|ref|ZP_02718112.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC3059-06]
 gi|183576230|gb|EDT96758.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC3059-06]
 gi|332077575|gb|EGI88036.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA41301]
          Length = 1463

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|13357937|ref|NP_078211.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762156|ref|YP_001752460.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|13959349|sp|Q9PQB4|DPO3_UREPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|11279168|pir||C82898 DNA polymerase III alpha chain 1 UU377 [imported] - Ureaplasma
           urealyticum
 gi|6899360|gb|AAF30786.1|AE002135_2 DNA polymerase III alpha chain 1 [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827733|gb|ACA32995.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
          Length = 1442

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 5/167 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL    D IIE GAV + +  +     Q F+ P  ++ +     L  I+ E
Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAVIMQNNKQIGEKIQFFIKP-IQQINENVTNLTNISQE 467

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127
            + +     +   +  + F++     +AHN   FD+ FIN  L +   +PL  +  IDTL
Sbjct: 468 MVNNAIDEKTALLKIKEIFDDH--ILVAHNGINFDINFINQRLLKWGLEPL-KNPSIDTL 524

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            I+R  +P   + L ++CK+Y +  +  S H A  D+ +L+DV+  M
Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDESAHRADYDAIVLADVFKVM 571


>gi|332204293|gb|EGJ18358.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA47901]
          Length = 1463

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|168576299|ref|ZP_02722182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae MLV-016]
 gi|307066950|ref|YP_003875916.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae AP200]
 gi|183577861|gb|EDT98389.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae MLV-016]
 gi|306408487|gb|ADM83914.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae AP200]
          Length = 1463

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|15902295|ref|NP_357845.1| DNA polymerase III PolC [Streptococcus pneumoniae R6]
 gi|116515846|ref|YP_815772.1| DNA polymerase III PolC [Streptococcus pneumoniae D39]
 gi|32469721|sp|Q8DRA5|DPO3_STRR6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|122279342|sp|Q04MH6|DPO3_STRP2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|15457800|gb|AAK99055.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae R6]
 gi|116076422|gb|ABJ54142.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae D39]
          Length = 1463

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|307126490|ref|YP_003878521.1| DNA polymerase III subunit alpha, Gram-positive type [Streptococcus
           pneumoniae 670-6B]
 gi|306483552|gb|ADM90421.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae 670-6B]
 gi|332076720|gb|EGI87182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA17545]
          Length = 1463

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|168484148|ref|ZP_02709100.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1873-00]
 gi|172042563|gb|EDT50609.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1873-00]
          Length = 1463

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|325686582|gb|EGD28608.1| DNA polymerase III PolC [Streptococcus sanguinis SK72]
          Length = 1462

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 8/164 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     L GITDE
Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++      +  EF +F   Q++  +AHNA FDVGF+N   +R N  P     +IDTL 
Sbjct: 482 HVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHNL-PKITQPVIDTLE 538

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 539 FARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|225860309|ref|YP_002741818.1| DNA polymerase III PolC [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229634|ref|ZP_06963315.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|225727760|gb|ACO23611.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae Taiwan19F-14]
          Length = 1463

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|182683255|ref|YP_001835002.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|303255179|ref|ZP_07341253.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
 gi|182628589|gb|ACB89537.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|301801215|emb|CBW33889.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV200]
 gi|302597812|gb|EFL64884.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
          Length = 1463

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|227529104|ref|ZP_03959153.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540]
 gi|227350948|gb|EEJ41239.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540]
          Length = 1442

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 9/190 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              +    ++FD+ETTGL +  D++IE+ A ++ D  +    F  F+ P G   S +   
Sbjct: 418 TPLDGQTYVIFDVETTGLSAIYDKVIELSASKMKDG-EVLERFDEFIDP-GFPLSEQTTN 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE ++   S   +F  F DF   +      HN  FD+GF+N   +R N + +  +
Sbjct: 476 LTSITDEMVQGSKSEEEVFRMFRDFC--EGCIIAGHNVSFDMGFMNTGYRRHNMEEI-TA 532

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL +AR  +P  R   LN+L K++ + + H   H A  D+     + + + +  ++
Sbjct: 533 PVIDTLPLARFLYPHMRGYRLNTLSKKFKVALEHH--HRANYDAEATGKL-LHIFLKDAE 589

Query: 181 INFGFKTNED 190
             +G K   D
Sbjct: 590 KRYGIKLISD 599


>gi|114707953|ref|ZP_01440845.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Fulvimarina pelagi HTCC2506]
 gi|114536582|gb|EAU39714.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Fulvimarina pelagi HTCC2506]
          Length = 466

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 88/169 (52%), Gaps = 7/169 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
             VFD ETTGL    D I++IGA+ ++D       TF   + P G      + K+HGITD
Sbjct: 274 YCVFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTLVDPGG-PIPRASSKIHGITD 332

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +P  +     F++F   + +  +AHNA FD+ F+    + +      P  I+DT+
Sbjct: 333 KMVMGQPRIAEAGRRFFEF--SKESVLVAHNAPFDMSFLRRHEKAMGVAFDHP--IVDTV 388

Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++      + R+ L+ +C+R GI I  + +H AL D+ + ++   +M+
Sbjct: 389 LVSAIIFGTTERHMLDVVCERLGIRIEKKDRHTALGDARVTAEAMKRML 437


>gi|301793541|emb|CBW35916.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV104]
          Length = 1463

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|149006027|ref|ZP_01829756.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP18-BS74]
 gi|147762383|gb|EDK69344.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP18-BS74]
          Length = 1463

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|332359968|gb|EGJ37782.1| DNA polymerase III PolC [Streptococcus sanguinis SK1056]
          Length = 866

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++      +  EF +F   Q++  +AHNA FDVGF+N   +R    P    
Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ I + H   H A  D+     + 
Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580


>gi|85057593|ref|YP_456509.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789698|gb|ABC65430.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 1572

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 91/169 (53%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D+IIEI  +++ + +K    FQ F+ P  +K +     +  ITDE
Sbjct: 481 YVVFDLETTGLSNVRDKIIEIAGIKIKNGNKIGE-FQKFIDPQ-QKLTKTITNITNITDE 538

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+ + +   +  +F  F   ++   +AHNA FDV F+  + + +    L+P  IIDT++
Sbjct: 539 MLQGQQTIDQVLPQFLAF--AKDCVLVAHNASFDVDFLKEKAKELKIS-LEPKPIIDTMA 595

Query: 129 IARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +++R   +      L  L   + + +     H AL D+   S+++IKM+
Sbjct: 596 LSQRYFSNLLKYFSLKRLATVFKVKLEDH--HRALADATATSEIFIKMI 642


>gi|294507448|ref|YP_003571506.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8]
 gi|294343776|emb|CBH24554.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8]
          Length = 563

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 11/176 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG    +DRI+EIGAV++ D +  +R FQ  + P  +       K+ GIT  
Sbjct: 8   FVVTDLETTGTTPDDDRIMEIGAVKVRDGAVVDR-FQQLVNPQ-QSVPGRITKMTGITTG 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P    +  ++  F    +   +AHN  FD  F++AELQR+  + L P+  + T+ 
Sbjct: 66  MVFEAPPADEVLPDYRAFLG--DGILVAHNVSFDGSFLDAELQRMGDETL-PNETLCTVR 122

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +ARR  P   +  L+ L + Y I +  R  H AL D+   S V  + +   SQ+ F
Sbjct: 123 LARRLLPGLDSKGLSRLAQFYDIDVEGR--HRALGDAEATSVVLRRFV---SQLAF 173


>gi|320547752|ref|ZP_08042036.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
 gi|320447512|gb|EFW88271.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
          Length = 1464

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N+   +VFD+ETTGL + ++ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 419 LELNEATYVVFDVETTGLSAVHNDLIQIAASKMYKGNIVEQ-FDEFINP-GHHLSAFTTE 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +++      +   F DF   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 477 LTGITDNHVRNAKPIEQVLQMFQDFC--KDTVLVAHNATFDVGFMNANYKRHGM-PTITQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL +AR  +P   R+ L  L KR+ +++ H   H A  D+     + 
Sbjct: 534 PVIDTLELARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLL 582


>gi|271964195|ref|YP_003338391.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507370|gb|ACZ85648.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 574

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 28/227 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              +++  +VFD+ETTG+ +    I EIGAV++         F   + P G    P    
Sbjct: 14  TPLSQITFVVFDLETTGVSAGEHAITEIGAVKVRGGEVLGE-FGTLVDP-GSPIPPFISV 71

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +   P   S+   F +F   +    +AHNA FD+GFI A        P    
Sbjct: 72  LTGITDTMVVAAPKIESVLPSFLEF--AEGTTLVAHNAGFDLGFIKAACAAHGYPP-PAH 128

Query: 122 RIIDTLSIARRKH---PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            ++DT+ +AR+      +    L++L + +        +H AL D+    DV   ++   
Sbjct: 129 PVVDTVVLARKLLTRDEAPNCKLSTLARIFS---KTEPRHRALADAQATVDVLHALLERA 185

Query: 179 SQINFGFKTNED---------------RFFKEEKKTVPNISLLKRDK 210
              +FG  T E+               R   +   T P + + + ++
Sbjct: 186 G--SFGVHTLEELRGFVRAPTPEQRRKRHLADGVPTGPGVYVFEDER 230


>gi|228940696|ref|ZP_04103259.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973614|ref|ZP_04134196.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980172|ref|ZP_04140486.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
 gi|228779530|gb|EEM27783.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
 gi|228786075|gb|EEM34072.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818940|gb|EEM65002.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 324

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 19  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 77  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPTNKVIDTVF 133

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H AL D    + VY K
Sbjct: 134 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNALDDCITCAAVYQK 176


>gi|84496154|ref|ZP_00995008.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649]
 gi|84382922|gb|EAP98803.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649]
          Length = 572

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 14/210 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              + +  +V D+ETTG       I EIGAV++         FQ F+ P G+        
Sbjct: 13  TPLSDVTFVVVDLETTGGSPSECGITEIGAVKVRAGEVLGE-FQTFVNP-GQPIPAFISV 70

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  ++D P        F +F     +  +AHNA FDV F+ A   R  +D     
Sbjct: 71  LTGITDAMVRDAPRVEPALVAFLEF--AAGSVLVAHNAGFDVSFLKAACGRAERDW-PSF 127

Query: 122 RIIDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            ++DT+ +AR+      +  + L SL   +G T +    H AL D+    DV   ++   
Sbjct: 128 PVVDTVHLARQLVTRDEAPNHRLGSLAVLFGATTT--PDHRALHDARATVDVLHGLI--A 183

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
              + G  + E+   K     VP  +  KR
Sbjct: 184 RVGSLGVHSLEE--LKAYSSRVPAATRRKR 211


>gi|127512799|ref|YP_001093996.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
 gi|126638094|gb|ABO23737.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
          Length = 204

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 83/174 (47%), Gaps = 9/174 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D ETTGL   + DR IEIGAV+L      +R FQ  + P G   S       GIT+
Sbjct: 6   IVVLDFETTGLSPLQGDRAIEIGAVKLQQGVVVDR-FQQLMNP-GFAVSSFIADYTGITN 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L D PS  ++ ++F DF   Q    +AHNA FD  F+ AE  RI+ +         +L
Sbjct: 64  AMLSDAPSCETVMADFADFI--QGCHLVAHNASFDQKFLTAEFARIDLE--QSQPFACSL 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +ARR   +   + L +L    GI       H AL D+ +   +++ +    SQ
Sbjct: 120 LLARRLFQAVPNHQLGTLVNYLGIANDG-VFHRALNDAEVTGALWLALSDAVSQ 172


>gi|332980705|ref|YP_004462146.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1
           BON]
 gi|332698383|gb|AEE95324.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1
           BON]
          Length = 288

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGL+  ND+IIE+ AV+  D    +R F   + P          +++ ITDE
Sbjct: 115 FVAIDLETTGLNPINDKIIEVAAVKFKDGQIIDR-FTTLINPEIH-IPSGITRINHITDE 172

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P  + +     +F   +++  + HNA FD+ F+         D    +  IDTL 
Sbjct: 173 MVKDAPVLAEVMPCLVNFI--EDSILVMHNASFDLKFLKHHAMNFGHDI--NNSYIDTLP 228

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             R          L ++    GI     S H A  D+ +   V IK + 
Sbjct: 229 TCRNIFSGLENYKLPTIASHLGI--CGDSFHRACNDAEICGQVLIKCIE 275


>gi|223933907|ref|ZP_03625870.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
 gi|223897433|gb|EEF63831.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
          Length = 1463

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S     L GITDE
Sbjct: 425 YVVFDVETTGLSAVNNALIQIAASKMHKGNIIAE-FDEFIDP-GHPLSQFTTDLTGITDE 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++       +  EF DF   Q++  +AHNA FDVGF+N   +R    P+    +IDTL 
Sbjct: 483 HVRGSKPLEQVLREFQDFC--QDSVMVAHNATFDVGFMNVNYERAGL-PIISQPVIDTLE 539

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            AR  +P   R+ L  L KR+G+ + H   H A  D+     +    +
Sbjct: 540 FARNLYPDFKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLLFTFL 585


>gi|325001618|ref|ZP_08122730.1| hypothetical protein PseP1_22781 [Pseudonocardia sp. P1]
          Length = 403

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 89/223 (39%), Gaps = 15/223 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
                +   V D+ETTG   + D I E+GAV +             + P G +   +  +
Sbjct: 18  TPLRDVTFCVVDLETTGGSHRADAITEVGAVSVRGGESIGE-LSTLVDP-GTRVPADVTR 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT+  L   P   ++     D    + +  +AHNA FD GF+ A  +R  + P    
Sbjct: 76  LTGITNGMLAGAPPLGAVLPPVLDLL--RGSVLVAHNAPFDTGFLRAACERHER-PWPSP 132

Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            ++ T  +AR   P        L +L   +G   +    H AL D+    +V   ++   
Sbjct: 133 PVLCTARLARAVLPRSECPSVRLGALAAHFGCRTT--PDHRALTDARATVEVLHHLLE-- 188

Query: 179 SQINFGFKTNED--RFFKEEKKTVPNISLLKRDKPLFTRITKE 219
              N G ++ E+  +  K+     P  +  +R   L  R+  E
Sbjct: 189 RIGNLGVQSLEELLQLVKDRAPHRPTTAQRQRRH-LAKRVPSE 230


>gi|330448476|ref|ZP_08312124.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492667|dbj|GAA06621.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 214

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 10/180 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           ++ D ETTGL   + DR IEIGAV+L +     + FQ  + P G + S       GI++ 
Sbjct: 18  VILDFETTGLSPNQGDRAIEIGAVKLQNGEVVGQ-FQQLMNP-GFRVSSFIEGYTGISNN 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  PS   + +EF DF    +A  +AHNA FD  F++AEL++IN+          ++ 
Sbjct: 76  MLRTAPSCDVVMNEFADFIG--DANLVAHNASFDQRFLDAELEQINRH--YGGTFTCSML 131

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           IARR +     + L +L     I   +   H AL DS + + +++ M+    Q  +G +T
Sbjct: 132 IARRLYQDAPNHKLGTLVDYKNI-YHNGVFHRALADSEMTARLWLVMLDDIKQ-QYGIET 189


>gi|253582216|ref|ZP_04859439.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
           ATCC 27725]
 gi|251835755|gb|EES64293.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
           ATCC 27725]
          Length = 1446

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 99/190 (52%), Gaps = 14/190 (7%)

Query: 1   MIRKNKM------RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M+R +K         +VFD+ET GL+S    IIEIGAV+ L  ++    +   + P  + 
Sbjct: 406 MVRSSKDIPIEEENFVVFDLETMGLNSHEHEIIEIGAVK-LQGTRIVERYSQLVNPK-KT 463

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              +  +L  I+ + + + P+   +  +F +F    ++  +AHNA FD+GFI  ++++I 
Sbjct: 464 IPKKIQELTNISQDMVDNMPTIEEVLPKFMEFVG--DSTMVAHNAPFDMGFIRRDVKKIM 521

Query: 115 KDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                P+ +IDTL +AR  +P  +   L +L K  G+++ +   H A+ DS   ++++I 
Sbjct: 522 GYDYKPA-VIDTLQMARDLYPELKAYGLKNLNKVLGLSLDNH--HRAVDDSQATANMFII 578

Query: 174 MMVGGSQINF 183
            +    ++  
Sbjct: 579 FIEKYMEMGI 588


>gi|251796459|ref|YP_003011190.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           JDR-2]
 gi|247544085|gb|ACT01104.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           JDR-2]
          Length = 953

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 8/178 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  V D+ETTG    +D I+++G   L D  +   T+  F+ P   +      +L GI 
Sbjct: 1   MKFAVLDLETTGHSVSDD-ILQVGLAVLDDNLEIVETYSSFVRPTI-EIPAFITQLTGID 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P    +  +   +   ++A  +AHN  FD GF+N  L R    P    R +DT
Sbjct: 59  ADMVADAPELDEVLMQLIPYL--EDAVLVAHNVNFDAGFLNQALDRCGYHPFI-GRRLDT 115

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           + + R  +PS +   L ++ + +GI  +H   H A  D+   ++++ + +    Q+  
Sbjct: 116 IELLRILYPSITTYQLGAVTELFGI--AHDQHHRADSDAIATAELFAQSVQKLRQLPL 171


>gi|193213751|ref|YP_001994950.1| hypothetical protein Ctha_0031 [Chloroherpeton thalassium ATCC
           35110]
 gi|193087228|gb|ACF12503.1| DNA polymerase III, epsilon subunit [Chloroherpeton thalassium ATCC
           35110]
          Length = 578

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 13/209 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     +RIIEI A++  +  +     +  + P  ++ S    +  GIT+ 
Sbjct: 24  FAVVDLETTGGLKPENRIIEICAIKCRNGQEVG-MLESLVNPE-QQISYFISQYTGITNS 81

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P   S+ ++  +FF E    ++AHN  FD+GFIN EL+R     L  +R + T  
Sbjct: 82  MVDNAPVIQSLLTKVSEFFQE--TIFVAHNVPFDMGFINMELERNGYAKL-TNRWLCTFR 138

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR  P   + +L  L K +GI + +R  H A  D      +  ++++  +Q   G +T
Sbjct: 139 LARRLLPTQQKKNLGDLAKYFGIIVENR--HRARGDCEATIKLLAELII-LAQEQHGVET 195

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            E+    + K     I   KR+   F++I
Sbjct: 196 AEELLSLQFKA----IRNFKREPRHFSKI 220


>gi|302389800|ref|YP_003825621.1| DNA polymerase III catalytic subunit, PolC type
           [Thermosediminibacter oceani DSM 16646]
 gi|302200428|gb|ADL07998.1| DNA polymerase III catalytic subunit, PolC type
           [Thermosediminibacter oceani DSM 16646]
          Length = 1415

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 9/161 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTGL    D IIEIGAV++      +R F  F+ P GR  S     L GI + 
Sbjct: 404 YVVTDIETTGLSLDADEIIEIGAVKVYRGQIIDR-FHSFVNP-GRPISSHITNLTGINNA 461

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P    + S+F  F    N  ++AHNA+FD GFI  + ++        ++++DTL+
Sbjct: 462 MVSQAPPVKDVMSDFLRFIG--NGIFVAHNAEFDAGFIRRDCKKFGMKF--DNKVMDTLN 517

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLS 168
           ++    P  +N  L+++ K++ I +   S H A  D++  +
Sbjct: 518 LSALVFPELKNHRLDTIAKKFNINM--GSHHRAGDDANTTA 556


>gi|257469515|ref|ZP_05633607.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|317063759|ref|ZP_07928244.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|313689435|gb|EFS26270.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
          Length = 1446

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 95/179 (53%), Gaps = 14/179 (7%)

Query: 1   MIRKNKM------RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M+R +K         +VFD+ET GL+S    IIEIGAV+ L  ++    +   + P  + 
Sbjct: 406 MVRSSKDALIEEESFVVFDLETMGLNSHEHEIIEIGAVK-LQGTRIVERYSQLVNPK-KP 463

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              +  +L  I+ + + + P+   +  +F +F    ++  +AHNA FD+GFI  ++++  
Sbjct: 464 IPKKIQELTNISQDMVDNMPTIEEVLPKFMEFVG--DSTMVAHNAPFDMGFIRRDVKKFM 521

Query: 115 KDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                P+ +IDTL +AR  +P  +   L +L K  G+++ +   H A+ DS   ++++I
Sbjct: 522 GYDYKPA-VIDTLQMARDLYPELKAYGLKNLNKVLGLSLDNH--HRAVDDSQATANMFI 577


>gi|332637692|ref|ZP_08416555.1| DNA polymerase III PolC [Weissella cibaria KACC 11862]
          Length = 1440

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 11/205 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            + ++   +VFD+ETTGL +  D++IE+ AV+++  +     F  F+ P G   S   + 
Sbjct: 417 TKLDEAEFVVFDVETTGLSAVYDKVIELSAVKMVKGNVIAE-FSEFIDP-GFPLSQTTVD 474

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITD+ ++       +F EF +F+   +A  + HN  FD+GF+     R    P+  +
Sbjct: 475 LTSITDDMVRGSKPEKQVFEEFREFYG--DAVLVGHNVTFDMGFMQEGYARHQLAPI-TN 531

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVG 177
            +IDTL +AR  +P+ R   LN+L K +GI +     H A+ DS        V+++    
Sbjct: 532 PVIDTLILARFLYPNMRSYRLNTLAKHFGIVLEQH--HRAIFDSETTGHLNRVFLEQARE 589

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPN 202
              I +  + N+     +  +    
Sbjct: 590 EYGIEYADQLNDHMMDNDAWRHGRP 614


>gi|189346954|ref|YP_001943483.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245]
 gi|189341101|gb|ACD90504.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245]
          Length = 214

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 9/177 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M R      +V D ETTGL  +  DR IEIGAV L+++ +    FQ  + P G + S   
Sbjct: 1   MQRTLADSVVVLDFETTGLSPQYGDRAIEIGAV-LVEHGEIVDRFQKLMNP-GFRISSFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+E LK +P    + +EF  F   +N   +AHNA FD  F++ EL+R  +  + 
Sbjct: 59  EGYTGITNEMLKGQPCCEEVMAEFSGFIAGRN--IVAHNASFDRRFLDFELKRAKR--VY 114

Query: 120 PSRIIDTLSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 +L ++RR +  S  + L +L    GI     S H AL D+ + + +++ M+
Sbjct: 115 EGACCCSLLVSRRIYQDSPNHRLQTLVTHAGIP-ETGSFHRALADAEMTALLWMSMI 170


>gi|157692739|ref|YP_001487201.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus pumilus SAFR-032]
 gi|157681497|gb|ABV62641.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032]
          Length = 930

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 9/172 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
             R +V DIETTG    K D+II+I AV + +     R +  ++ P G+       +L G
Sbjct: 3   DQRFVVVDIETTGNSPKKGDKIIQIAAVVIENGQIVER-YSKYVNP-GKPIPGFIEQLTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I    + D   F  I  E +D    Q A ++AHN  FD+ F+N EL+   K+ LD    I
Sbjct: 61  IQQHMVDDAVFFEDIAQEVYDLI--QGAYFVAHNVHFDLNFLNDELKACGKNELDV-LAI 117

Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+ I+R  +P      L  L +   + + H   H A  D+ + + +++ ++
Sbjct: 118 DTVEISRILYPELEGYKLTELSEE--LMLPHDHPHRADSDAEVTAMLFLTLL 167


>gi|312865553|ref|ZP_07725780.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus downei F0415]
 gi|311099071|gb|EFQ57288.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus downei F0415]
          Length = 1468

 Score =  161 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 9/190 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +  ++ F  F+ P G   S     
Sbjct: 423 MDLHEATYVVFDVETTGLSAVNNSLIQIAASKMHKGNIIDQ-FDEFINP-GHPLSQFTTD 480

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  LKD      +  EF +F   Q+   +AHNA FDVGF+NA  +R +  PL   
Sbjct: 481 LTGITDNHLKDAKPLLQVLEEFQEFC--QDTVLVAHNATFDVGFMNANYERHDL-PLISQ 537

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ + + H   H A  D+     +   + +  ++
Sbjct: 538 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVALDHH--HMANYDAEATGRLLF-IFIKEAR 594

Query: 181 INFGFKTNED 190
            N G     D
Sbjct: 595 ENRGITDLAD 604


>gi|227536604|ref|ZP_03966653.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243681|gb|EEI93696.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 469

 Score =  161 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 20/220 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG  + N  I EI A+ L D  +   ++Q  + P+ ++       L GIT E
Sbjct: 13  YAIVDIETTGGYAANSGITEI-AIYLHDGHQVIDSYQTLINPH-KEIPYHIQMLTGITPE 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D PSF  + ++ + F   +N  ++AHN  FD  FI A L+        P   + T+ 
Sbjct: 71  MLTDAPSFEDVAADIYSFL--ENKVFVAHNVNFDYSFIYAHLKACGYQWKSP--KLCTVR 126

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG--- 184
           +AR      S   L +LC+R  I IS R  H A  D+     ++ +++   +        
Sbjct: 127 LARNIFKGFSSYSLGNLCQRLDIPISDR--HRAAGDAKATVILFERILSQDTDGLIDSFL 184

Query: 185 --------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                     T+ D+   E     P I + K +K     +
Sbjct: 185 QTHAKEQLLPTHIDKMVFERLPAKPGIYIFKNNKGKIIYV 224


>gi|255070749|ref|XP_002507456.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
 gi|226522731|gb|ACO68714.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
          Length = 1473

 Score =  161 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 21/215 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGL+   +RIIEI AV + D   T++     + P      P  + L GIT+  
Sbjct: 296 VVFDLETTGLNKDRNRIIEIAAVNVSD--PTHQPMSTLVNPGRFAVPPPVVALTGITNAM 353

Query: 70  L---------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLD 119
           +         +    F     E        +    AHNA+ FD GF+ AE +R+ ++  +
Sbjct: 354 VSAPAVPSFQRAAELFQEYIDEARRRCGGASVLLAAHNARQFDAGFLQAEYRRLGRELPE 413

Query: 120 PSRIIDTLSIARRKH-----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             R +DTL +AR+       P     L SL   +G+  +  S H A  D+ +L DV  ++
Sbjct: 414 DWRFVDTLPLARKTLAKEAVPGGSYKLESLAAHFGVDTAGASAHRAEADARMLGDVLQRL 473

Query: 175 ----MVGGSQINFGFKTNEDRFFKEEKKTVPNISL 205
               + G +  +      E     E    +   S 
Sbjct: 474 VGCSLEGTAGTSIAADDVEHSELAEALSAMKTYSF 508


>gi|188024469|ref|ZP_02997117.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
 gi|188018579|gb|EDU56619.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
          Length = 1442

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 5/173 (2%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +    ++FDIETTGL    D IIE GA+ + +  +     Q F+ P  ++ +     L
Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNL 461

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
             I+ E + D     +   +  + F   N   +AHN   FD+ FIN  L +   +PL  +
Sbjct: 462 TNISQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPL-KN 518

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDTL I R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M
Sbjct: 519 PSIDTLMILRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIM 571


>gi|153815178|ref|ZP_01967846.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756]
 gi|145847437|gb|EDK24355.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756]
          Length = 279

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 96/214 (44%), Gaps = 19/214 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FD+ETTGLD  N+ IIEIGA+++ D  K +  F  F+ P     SP    L GI+++
Sbjct: 39  YIAFDLETTGLDPMNNEIIEIGALKVRDG-KVSERFMEFIKPQ-ELISPAITGLTGISND 96

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +       S+ ++F DF  E     I HN  FD  F      R           IDTL 
Sbjct: 97  MVASARPARSVITDFIDFCEED--ILIGHNIIFDYSFTKCTAAREGLPFEKMG--IDTLK 152

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           IA++ HP      L++LC+ Y I   +++ H A  D+   + +Y  +       +  F+ 
Sbjct: 153 IAKKVHPELESKSLSALCEHYKIE--NKAAHRAYFDALATAKLYQTL-------SHYFEP 203

Query: 188 NEDRFFKEEK---KTVPNISLLKRDKPLFTRITK 218
           +  + FK  +   K         +   L  R+TK
Sbjct: 204 DNPKTFKPSQLTYKIRKPQPATPKQLALLERLTK 237


>gi|326941329|gb|AEA17225.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 315

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPTNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H AL D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNALDDCITCAAVYQK 167


>gi|83310642|ref|YP_420906.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
 gi|82945483|dbj|BAE50347.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
          Length = 412

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64
           +  +VFD ETTGL   + D+I+ I  V +++       +F   + P GR    E+++ HG
Sbjct: 217 LTFVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNP-GRPIPAESIRYHG 275

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD+ + DKP    +  +F  +    +A  +AHNA FD+ F+    + +      P  ++
Sbjct: 276 ITDDMVVDKPPAGVVLPQFRSYVA--DAVLVAHNAAFDLKFLRMREKDMGIRFDIP--VL 331

Query: 125 DTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           DT+ ++     P + + L+ +C RYGI I+ R  H AL D+ + + V ++ +  
Sbjct: 332 DTMILSNFLDGPDAGHSLDDICDRYGIEITDR--HTALGDAMVTAAVLLRQIEA 383


>gi|330833568|ref|YP_004402393.1| DNA polymerase III PolC [Streptococcus suis ST3]
 gi|329307791|gb|AEB82207.1| DNA polymerase III PolC [Streptococcus suis ST3]
          Length = 1463

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 8/164 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S     L GITDE
Sbjct: 425 YVVFDVETTGLSAVNNALIQIAASKMHKGNIIAE-FDEFIDP-GHPLSQFTTDLTGITDE 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++       +  EF DF   Q++  +AHNA FDVGF+N   +R    P+    +IDTL 
Sbjct: 483 HVRGSKPLEQVLREFQDFC--QDSVMVAHNATFDVGFMNVNYERAGL-PIISQPVIDTLE 539

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 540 FARNLYPDFKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|323191554|gb|EFZ76814.1| DNA polymerase III subunit epsilon domain protein [Escherichia coli
           RN587/1]
          Length = 155

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 63/152 (41%), Positives = 92/152 (60%), Gaps = 11/152 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP+F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 66  HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNATFDIGFMDYEFSLLKRDIPKTNT 123

Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGIT 151
                D+L++AR+  P  RN L++LC RY I 
Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEID 155


>gi|319939893|ref|ZP_08014248.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV]
 gi|319810904|gb|EFW07223.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV]
          Length = 1464

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 8/180 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   +   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 419 MELKEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTD 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +K+      +  EF DF   Q+   +AHNA FDVGF+N   +R    P    
Sbjct: 477 LTGITDEHVKNAKPLEQVLQEFQDFC--QDTVLVAHNATFDVGFMNVNYERHGL-PRITQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     +    +   ++
Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFINDAAE 591


>gi|291301852|ref|YP_003513130.1| DNA polymerase III subunit epsilon [Stackebrandtia nassauensis DSM
           44728]
 gi|290571072|gb|ADD44037.1| DNA polymerase III, epsilon subunit [Stackebrandtia nassauensis DSM
           44728]
          Length = 578

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 14/212 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              +++  +V D+ETTG+ S    I EIGAV++         +   + P G         
Sbjct: 19  TPLSEVTFMVVDLETTGVASDACSITEIGAVKVRGGEVLGE-YATLVNP-GEAIDARISA 76

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  + D P+   +   F +F   + A W+AHNA FDVGF+ +   +    P    
Sbjct: 77  LTGITDAMVADAPAIEEVLPSFLEF--ARGAVWVAHNAPFDVGFLRSACAQAEL-PWPRP 133

Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +++DT+ +ARR           L++L + +G  +  +  H AL D+    DV   ++   
Sbjct: 134 QVVDTVVLARRLVDRSEVPNKRLSTLARYFGARV--KPSHRALDDARATVDVLHALLERL 191

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
                   T+ED    + ++ +P     K+  
Sbjct: 192 G--THYVLTDED--LADFQRVIPAAERRKKRH 219


>gi|327405996|ref|YP_004346834.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823]
 gi|327321504|gb|AEA45996.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM
           16823]
          Length = 458

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 24/244 (9%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   + DIETTG  +K+ +I EI   +  D  K   +F   + P          +L GI 
Sbjct: 1   MNYAIVDIETTGGSTKSSKITEIAIYKH-DGMKIIDSFDTLVNPE-MPIPEFISRLTGIH 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +++ P F  I  +  +F   ++  ++AHN  FD G I  E + +  D       + T
Sbjct: 59  DDMVENAPKFYEIAKQIIEF--TEDCIFVAHNVGFDYGIIRHEFKLLGYDY--RKAHLCT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---------MV 176
           +  +R   P      L  L K  GI +  R  H A  D+   + ++  +           
Sbjct: 115 VRASRYVIPDHESYSLGKLTKALGIQLIGR--HRAKGDAEATAHLFTLLHTTDSKGLQTF 172

Query: 177 GGSQINFG-FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE-----LDEHDKTIQT 230
              +IN      N D    EE    P I     D      I K +     +++H K ++T
Sbjct: 173 IQEEINPKILHPNLDLETLEEIPNKPGIYKFYNDTNQLIYIGKSKHIKKRIEQHLKNVKT 232

Query: 231 LGKN 234
           L  +
Sbjct: 233 LKGS 236


>gi|183602347|ref|ZP_02963713.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019]
 gi|241191299|ref|YP_002968693.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196705|ref|YP_002970260.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218266|gb|EDT88911.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019]
 gi|240249691|gb|ACS46631.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251259|gb|ACS48198.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794292|gb|ADG33827.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 188

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 87/167 (52%), Gaps = 7/167 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            M  I  D+ETTG  ++NDRI EIGAV++ D    +R F   + P GR+ S    +L GI
Sbjct: 8   PMNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDR-FTQLVNP-GRRVSARITELTGI 65

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRII 124
           ++E L+D+P    I  +F  +   +N   + HN KFD+ F+ A  +R+  D      R I
Sbjct: 66  SNEMLEDQPVIEDILGDFIHW--TENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRPI 123

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           DT+ I R   PS R+ L  L +RYGI      +H AL D+       
Sbjct: 124 DTMHIDRLLFPSERHRLVDLIQRYGI--GDVEEHRALSDATQTYQCL 168


>gi|118466522|ref|YP_881505.1| hypothetical protein MAV_2300 [Mycobacterium avium 104]
 gi|118167809|gb|ABK68706.1| DNA polymerase III, epsilon subunit [Mycobacterium avium 104]
          Length = 643

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 26/228 (11%)

Query: 4   KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
                 +V D+ETTG  S +      D I EIGAV++ D       F   + P  R   P
Sbjct: 35  LRDTTFVVVDLETTGGRSTSTGETAPDAITEIGAVKVRDGVVLGE-FATLVDPQ-RSIPP 92

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKD 116
           + ++L GIT   + D P+  ++   F +F   ++ A  +AHNA FDVGF+ A  Q+ +  
Sbjct: 93  QIMRLTGITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIA 152

Query: 117 PLDPSRIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              P R++ T+ +ARR   +  +    L SL + + +T   +  H AL D+    DV   
Sbjct: 153 WPRP-RVLCTVRLARRVLSREEAPSVRLASLARLFAVTT--QPTHRALDDARATVDVLHA 209

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           ++      N G  T     + + +  +P+++  +R K    R+  E L
Sbjct: 210 LIERVG--NQGVHT-----YADLRGYLPDVTPAQRRK----RVLAEGL 246


>gi|315222325|ref|ZP_07864231.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
 gi|315188658|gb|EFU22367.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
          Length = 1456

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 8/180 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   +   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S     
Sbjct: 411 MELKEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTD 468

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +K+      +  EF DF   Q+   +AHNA FDVGF+N   +R    P    
Sbjct: 469 LTGITDEHVKNAKPLEQVLQEFQDFC--QDTVLVAHNATFDVGFMNVNYERHGL-PRITQ 525

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     +    +   ++
Sbjct: 526 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFINDAAE 583


>gi|225550655|ref|ZP_03771604.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
 gi|225379809|gb|EEH02171.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
          Length = 1442

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 5/173 (2%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +    ++FDIETTGL    D IIE GA+ + +  +     Q F+ P  ++ +     L
Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNL 461

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
             I  E + D     +   +  + F   N   +AHN   FD+ FIN  L +   +PL+ +
Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLE-N 518

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDTL I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M
Sbjct: 519 PSIDTLMISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIM 571


>gi|146319608|ref|YP_001199320.1| DNA polymerase III PolC [Streptococcus suis 05ZYH33]
 gi|146321806|ref|YP_001201517.1| DNA polymerase III PolC [Streptococcus suis 98HAH33]
 gi|253752606|ref|YP_003025747.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|253754432|ref|YP_003027573.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|253756365|ref|YP_003029505.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|166217454|sp|A4W428|DPO3_STRS2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217456|sp|A4VXT1|DPO3_STRSY RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|145690414|gb|ABP90920.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus suis 05ZYH33]
 gi|145692612|gb|ABP93117.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus suis 98HAH33]
 gi|251816895|emb|CAZ52544.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|251818829|emb|CAZ56672.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|251820678|emb|CAR47440.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|292559223|gb|ADE32224.1| DNA polymerase III, alpha subunit [Streptococcus suis GZ1]
 gi|319759021|gb|ADV70963.1| DNA polymerase III PolC [Streptococcus suis JS14]
          Length = 1463

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 8/164 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S     L GITDE
Sbjct: 425 YVVFDVETTGLSAVNNALIQIAASKMHKGNIIAE-FDEFIDP-GHPLSQFTTDLTGITDE 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++       +  EF DF   Q++  +AHNA FDVGF+N   +R    P+    +IDTL 
Sbjct: 483 HVRGSKPLEQVLREFQDFC--QDSVMVAHNATFDVGFMNVNYERAGL-PIISQPVIDTLE 539

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 540 FARNLYPDFKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|302024523|ref|ZP_07249734.1| DNA polymerase III PolC [Streptococcus suis 05HAS68]
          Length = 1463

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 8/164 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S     L GITDE
Sbjct: 425 YVVFDVETTGLSAVNNALIQIAASKMHKGNIIAE-FDEFIDP-GHPLSQFTTDLTGITDE 482

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++       +  EF DF   Q++  +AHNA FDVGF+N   +R    P+    +IDTL 
Sbjct: 483 HVRGSKPLEQVLREFQDFC--QDSVMVAHNATFDVGFMNVNYERAGL-PIISQPVIDTLE 539

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 540 FARNLYPDFKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|171920838|ref|ZP_02932008.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
 gi|171903036|gb|EDT49325.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
          Length = 1442

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 5/173 (2%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +    ++FDIETTGL    D IIE GA+ + +  +     Q F+ P  ++ +     L
Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNL 461

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
             I  E + D     +   +  + F   N   +AHN   FD+ FIN  L +   +PL+ +
Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLE-N 518

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDTL I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M
Sbjct: 519 PSIDTLMISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIM 571


>gi|99078640|ref|YP_611898.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040]
 gi|99035778|gb|ABF62636.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040]
          Length = 479

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 90/175 (51%), Gaps = 7/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61
           R +++  +VFD ETTGL    D I+E+ A  +L+    +   F+ ++ P GR     + K
Sbjct: 267 RLSELNFVVFDTETTGLSVTKDAIVELAAARVLNGRILDGEVFETYVDP-GRPIPAASTK 325

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG+ D  +   P   ++   F DF   Q+A  +AHNA FD+G +  +  +       P 
Sbjct: 326 IHGVRDADVAQSPRIEAVIPAFHDF--AQSAVLVAHNAPFDIGLLRQQEVQTGCSWDHP- 382

Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DT+ ++      S+ + L++LC R  I I  R +H A  D+   ++  I+++
Sbjct: 383 -VVDTVLLSALVFGISADHSLDALCSRLSIEIPARHRHTAKGDARATAEALIRLL 436


>gi|209554353|ref|YP_002284813.1| DNA polymerase III PolC [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|209541854|gb|ACI60083.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
          Length = 1442

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 5/173 (2%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +    ++FDIETTGL    D IIE GA+ + +  +     Q F+ P  ++ +     L
Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNL 461

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
             I  E + D     +   +  + F   N   +AHN   FD+ FIN  L +   +PL+ +
Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLE-N 518

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDTL I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M
Sbjct: 519 PSIDTLMISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIM 571


>gi|225858122|ref|YP_002739632.1| DNA polymerase III PolC [Streptococcus pneumoniae 70585]
 gi|225720766|gb|ACO16620.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae 70585]
          Length = 1463

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEAIYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|169827550|ref|YP_001697708.1| ATP-dependent helicase dinG [Lysinibacillus sphaericus C3-41]
 gi|168992038|gb|ACA39578.1| Probable ATP-dependent helicase dinG [Lysinibacillus sphaericus
           C3-41]
          Length = 923

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 11/173 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M+     +  + D+ETTG    N DR+I+I  V + D+ +  RT+  F+ P G+      
Sbjct: 1   MME--SQKYAIVDLETTGHSPANGDRMIQIAIVIMKDW-EIERTYTKFINP-GKAIPTFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             L  IT+E +KD   F       ++     +  ++AHNA FD+ F+ AE +R    P  
Sbjct: 57  QDLTHITNEDVKDSYPFEEHADYIYELLA--DCVFVAHNADFDLSFLQAEFKRAGL-PKW 113

Query: 120 PSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             + +DT+ +A+   P S    L  L     I +++   H A  D+   ++++
Sbjct: 114 QGKKMDTVELAKILFPMSLGFKLGDLAADLNIELAN--AHRADDDARATAELF 164


>gi|227498668|ref|ZP_03928812.1| DNA polymerase III [Acidaminococcus sp. D21]
 gi|226904124|gb|EEH90042.1| DNA polymerase III [Acidaminococcus sp. D21]
          Length = 225

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITD 67
            +V DIETTGLD     IIEIGAV + + + + R FQ FL P   +  SP    L GITD
Sbjct: 57  YVVIDIETTGLDVARSAIIEIGAVHVRNGAVSGR-FQTFLTPEPYQSLSPFITNLTGITD 115

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L   P+F  I     DF        + HN  FD+ F+   + R   + L+ +  +DT 
Sbjct: 116 SDLVGAPTFREILPRLRDFLG--GYTLVGHNVNFDINFLYDRIYRETGEHLN-NPYLDTK 172

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +A+   P   +  L +LCK +GI  +H   H A+ D  L   V   +
Sbjct: 173 KLAKTVVPGLSHYSLEALCKHFGIAGNH---HRAVDDCELTEKVLDAL 217


>gi|149188690|ref|ZP_01866982.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Vibrio
           shilonii AK1]
 gi|148837600|gb|EDL54545.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Vibrio
           shilonii AK1]
          Length = 207

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 9/177 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M+  +    +V D ETTGL   + DR IEIGAV+L + +  +R FQ  + P G + S   
Sbjct: 1   MMLSSAKSVVVLDFETTGLSPNQGDRAIEIGAVKLENGTVVDR-FQSLMNP-GFRVSGFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GI++  L + PS   +  EF  F   +N+  +AHNA FD  F++AEL+ IN+    
Sbjct: 59  ENYTGISNAMLANAPSCKDVMGEFSTFI--KNSNLVAHNASFDKRFLDAELELINES--Y 114

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 +L ++RR +  +  + L  L   + I       H AL D+ + + +++ ++
Sbjct: 115 TGEFACSLLVSRRLNQEAHSHKLGDLVAYHNIANDG-VFHRALADAEVTASLWLLLV 170


>gi|330903518|gb|EGH34090.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 147

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 66/147 (44%), Positives = 91/147 (61%), Gaps = 7/147 (4%)

Query: 35  LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW 94
           +    T R F V+L P+ R++   A+ +HGIT+EFL  KP F+ +  EF++F   + A+ 
Sbjct: 1   IGRRLTGRHFHVYLQPD-RESDEGAIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQL 57

Query: 95  IAHNAKFDVGFINAELQRIN----KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150
           I HNA FDVGFIN E   +      D      ++DTL +AR +HP  RN L++LCKRYG+
Sbjct: 58  IIHNAAFDVGFINNEFALMGSQDRADITQHCSVLDTLMMARERHPGQRNSLDALCKRYGV 117

Query: 151 TISHRSKHGALLDSHLLSDVYIKMMVG 177
             S R  HGALLDS +L+DVY+ M  G
Sbjct: 118 DNSGRELHGALLDSEILADVYLAMTGG 144


>gi|332293348|ref|YP_004431957.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171434|gb|AEE20689.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 466

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 9/177 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M         V D+ETTG     +RI EI AV L D    ++ F   + P  +   P   
Sbjct: 1   MNETEPTYHCVIDVETTGKGINGNRITEICAVRLKDGEVVDK-FTSLVNPE-QYIPPFIT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GI D  + D P F+ I     +      A ++AHN  FD   + +E +R+       
Sbjct: 59  NLTGIDDAMVADAPLFNEIADRIIEI--SSGAIFVAHNVTFDFNVLRSEFKRLGHSF--T 114

Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            + + T+ ++R+  PS     L +LC   GI +++R  H A  D+     ++ +++ 
Sbjct: 115 RKKLCTVRLSRKLIPSLFSYSLGNLCASIGIPLNNR--HRAEGDTDATVILFKRLLT 169


>gi|229075504|ref|ZP_04208492.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
 gi|228707600|gb|EEL59785.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
          Length = 318

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGF-PEPKNKVIDTVF 127

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170


>gi|195867849|ref|ZP_03079848.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|195660426|gb|EDX53684.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
          Length = 1442

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 5/173 (2%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +    ++FDIETTGL    D IIE GA+ + +  +     Q F+ P  ++ +     L
Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNL 461

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
             I  E + D     +   +  + F   N   +AHN   FD+ FIN  L +   +PL+ +
Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLE-N 518

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDTL I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M
Sbjct: 519 PSIDTLMISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIM 571


>gi|217973179|ref|YP_002357930.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223]
 gi|217498314|gb|ACK46507.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223]
          Length = 208

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 11/215 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M        +V D ETTGL   + DR IEIGAV + +   T R F   + P G + S   
Sbjct: 1   MPTSAANTLVVLDFETTGLSPNQGDRAIEIGAVLIENGVITQR-FSELMNP-GFRISRFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GI+++ L+D    + + + F DF  + N   +AHNA FD  F++AE  +I    L 
Sbjct: 59  EDYTGISNQMLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYL- 115

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +   +L +ARR + ++ N  L +L  RY    +  + H AL D+ +   +++ M+   
Sbjct: 116 -GQFGCSLLVARRLYQAAPNHQLGTLV-RYKQLPTDGTFHRALADAEMTGHLWLAMLADL 173

Query: 179 SQINFGFKTNEDRFFKE-EKKTVPNISLLKRDKPL 212
            Q  FG  +      ++  KKT  ++    R   +
Sbjct: 174 QQ-EFGLCSPTFELLQKLAKKTKADVPKFLRQYAV 207


>gi|289177416|gb|ADC84662.1| DNA polymerase III, epsilon chain [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 190

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 87/167 (52%), Gaps = 7/167 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            M  I  D+ETTG  ++NDRI EIGAV++ D    +R F   + P GR+ S    +L GI
Sbjct: 10  PMNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDR-FTQLVNP-GRRVSARITELTGI 67

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRII 124
           ++E L+D+P    I  +F  +   +N   + HN KFD+ F+ A  +R+  D      R I
Sbjct: 68  SNEMLEDQPVIEDILGDFIHW--TENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRPI 125

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           DT+ I R   PS R+ L  L +RYGI      +H AL D+       
Sbjct: 126 DTMHIDRLLFPSERHRLVDLIQRYGI--GDVEEHRALSDATQTYQCL 170


>gi|254774974|ref|ZP_05216490.1| hypothetical protein MaviaA2_09919 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 648

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 26/228 (11%)

Query: 4   KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
                 +V D+ETTG  S +      D I EIGAV++ D       F   + P  R   P
Sbjct: 40  LRDTTFVVVDLETTGGRSTSTGETAPDAITEIGAVKVRDGVVLGE-FATLVDPQ-RSIPP 97

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKD 116
           + ++L GIT   + D P+  ++   F +F   ++ A  +AHNA FDVGF+ A  Q+ +  
Sbjct: 98  QIMRLTGITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIA 157

Query: 117 PLDPSRIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              P R++ T+ +ARR   +  +    L SL + + +T   +  H AL D+    DV   
Sbjct: 158 WPRP-RVLCTVRLARRVLSREEAPSVRLASLARLFAVTT--QPTHRALDDARATVDVLHA 214

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           ++      N G  T     + + +  +P+++  +R K    R+  E L
Sbjct: 215 LIERVG--NQGVHT-----YADLRGYLPDVTPAQRRK----RVLAEGL 251


>gi|229098054|ref|ZP_04229002.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
 gi|228685245|gb|EEL39175.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
          Length = 318

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGF-PEPKNKVIDTVF 127

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170


>gi|312195665|ref|YP_004015726.1| DNA polymerase III epsilon subunit [Frankia sp. EuI1c]
 gi|311227001|gb|ADP79856.1| DNA polymerase III, epsilon subunit [Frankia sp. EuI1c]
          Length = 615

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/216 (27%), Positives = 89/216 (41%), Gaps = 21/216 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG       I E GAV++    +    F   +  +     P    L GITD 
Sbjct: 52  FVVFDLETTGTGPTTAEITEFGAVKVR-GGEVVAEFATLVRASTG-IPPLITVLTGITDA 109

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P  + +   F +F   Q    +AHNA FD+ F+ A  +R+   P+     +DT  
Sbjct: 110 MLATAPPLAEVLPAFLEFI--QGTVLVAHNAGFDLSFLKAACERVGY-PVPTWEHLDTAR 166

Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +ARR   +  S  N L+SL + +         H AL D+    DV   +       N G 
Sbjct: 167 LARRIVTRDESPNNKLSSLARLFRARTE--PCHRALADARATVDVLHGL--FERLGNLGV 222

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
            T ED            +S  +R K    R+  ++L
Sbjct: 223 TTLEDVHA-----YSARVSPAQRRK----RVLADDL 249


>gi|237653313|ref|YP_002889627.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237624560|gb|ACR01250.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 769

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 106/204 (51%), Gaps = 12/204 (5%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61
            +++   VFD ETTGL+  + D II++GA  +L+       +F+  + P  R  +PE+ K
Sbjct: 574 LSELSYTVFDTETTGLNPSQGDEIIQVGATRILNGKLLRAESFEQLVDPE-RPLAPESAK 632

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT E L+ +P+   +   F  F    +   IAHNA FD+ F+  + ++       P 
Sbjct: 633 IHGITSEMLRGQPTIDKVLPAFHAF--AADTVLIAHNAAFDMRFLQLKEEQTGLRFDHP- 689

Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL ++   HP    + L ++ +R G+TI  R  H AL D+ + ++V++K++   ++
Sbjct: 690 -VIDTLLLSAVVHPNQESHRLEAIAERLGLTIVGR--HTALGDAIVTAEVFLKLIPLLAE 746

Query: 181 INFGFKTNEDRFFKEEKKTVPNIS 204
              G +T  D     EK     + 
Sbjct: 747 --KGIRTLRDAREAAEKTYYARVK 768


>gi|186701836|ref|ZP_02971504.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
 gi|186701125|gb|EDU19407.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
          Length = 1442

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 5/173 (2%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +    ++FDIETTGL    D IIE GA+ + +  +     Q  + P  ++ +     L
Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFLVKP-IQQINENITNL 461

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
             I+ E + +     +   +  + F+  N   +AHN   FD+ FIN  L +   +PL  +
Sbjct: 462 TNISQEMVNNAIDEKTALLKIKEIFD--NHILVAHNGINFDINFINQRLLKWGLEPL-KN 518

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDTL I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M
Sbjct: 519 PSIDTLMISRAINPFKSHRLGAICKKYEVDYNDEIAHRADYDAIVLADVFKVM 571


>gi|185178976|ref|ZP_02964733.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|225551037|ref|ZP_03771983.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
 gi|184209258|gb|EDU06301.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|225378852|gb|EEH01217.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
          Length = 1442

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 5/173 (2%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +    ++FDIETTGL    D IIE GA+ + +  +     Q F+ P  ++ +     L
Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNL 461

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
             I  E + D     +   +  + F+  N   +AHN   FD+ FIN  L +    PL  +
Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFD--NHILVAHNGISFDINFINQRLLKWGLKPL-KN 518

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDTL I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M
Sbjct: 519 PSIDTLMISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIM 571


>gi|299538599|ref|ZP_07051882.1| ATP-dependent helicase dinG [Lysinibacillus fusiformis ZC1]
 gi|298726186|gb|EFI66778.1| ATP-dependent helicase dinG [Lysinibacillus fusiformis ZC1]
          Length = 923

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 11/173 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M+     +  + D+ETTG    N DR+I+I  V + D+ +  RT+  F+ P G+      
Sbjct: 1   MME--SQKYAIVDLETTGHSPANGDRMIQIAIVIMKDW-EIERTYTKFINP-GKAIPTFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             L  IT+E +KD   F +     ++     +  ++AHNA FD+ F+ AE +R    P  
Sbjct: 57  QDLTHITNEDVKDAFPFEAHADYIYELLA--DCVFVAHNADFDLSFLQAEFKRAGL-PKW 113

Query: 120 PSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             + +DT+ +A+   P S    L  L     I +++   H A  D+   ++++
Sbjct: 114 QGKKMDTVELAKILFPMSLGFKLGDLAADLNIELAN--AHRADDDARATAELF 164


>gi|313618186|gb|EFR90268.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           innocua FSL S4-378]
          Length = 931

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 9/171 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M +  K R IV D+ETTG  + + DRII+  A   ++  K   T+  FL P  +      
Sbjct: 1   MEQMKKKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYSTFLNPE-KPIPAFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L GI+ + +K+ P F  +          ++  ++AHN  FD  F+  E+ R     L 
Sbjct: 59  QELTGISPKDVKNAPLFEDVAPIIASLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LG 115

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             + +DT+ +AR  +P      L  L   +G  + H   H A  D+ + +D
Sbjct: 116 KMKKLDTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 164


>gi|312868001|ref|ZP_07728205.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parasanguinis F0405]
 gi|311096405|gb|EFQ54645.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parasanguinis F0405]
          Length = 1464

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N+   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 419 LDLNEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVI-EEFDEFIDP-GHPLSAFTTQ 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT+E ++       +  EF  F   +    +AHNA FDVGF+NA  +R    P    
Sbjct: 477 LTGITNEHVRGAKPLVQVLKEFQAFC--EGTVLVAHNATFDVGFMNANYERHGL-PKITQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 534 PVIDTLEFARNLYPDFKRHGLGPLTKRFGVGLEHH--HMANYDAEATGRLL 582


>gi|150018035|ref|YP_001310289.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
           8052]
 gi|149904500|gb|ABR35333.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
           8052]
          Length = 1446

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 9/190 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG   + ++I EIG +++ D    ++ F  F+ P  +      +++  ITD+
Sbjct: 423 YCVLDLETTGFSPQTEKITEIGVMKIKDGKVIDK-FSTFVNPQ-KSIPMRVVEVTKITDD 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+  +   +F +  +F   + +  +AHNA FD+GF+    + +  +       IDTL 
Sbjct: 481 MVKNAETIDKVFPKLLEFI--EGSVLVAHNADFDIGFLKHNAKVLGYEF--DFTYIDTLG 536

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P  +   L  + K  GI +     H AL D      V+  ++    +      +
Sbjct: 537 LAQDVFPDYKSYKLGRIAKNLGIKVE--VAHRALDDVDTTVKVFNIIIEKLKERGAQTLS 594

Query: 188 NEDRFFKEEK 197
           + D +  +E+
Sbjct: 595 DIDLYAADEE 604


>gi|78224248|ref|YP_385995.1| DNA polymerase III subunit epsilon [Geobacter metallireducens
           GS-15]
 gi|78195503|gb|ABB33270.1| DNA polymerase III, epsilon subunit [Geobacter metallireducens
           GS-15]
          Length = 218

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 9/177 (5%)

Query: 6   KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K   ++ D ETTGL     DR IEIGAV + +    +R FQ  + P G++ S    +  G
Sbjct: 3   KFTAVILDFETTGLSPGYGDRAIEIGAVLVRNNRIVDR-FQSLMNP-GKRVSGFIEEYTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E L   P    +   F  F    N   +AHNA FD  F++AEL RI +         
Sbjct: 61  ITNEMLAKAPPAEQVMERFASFIAGHN--LVAHNASFDRRFLDAELSRIGRR--RTGDFA 116

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++  ARR + +   + L +L     +  +    H AL D+ + + ++  M+    +
Sbjct: 117 CSMLAARRIYTNAPNHRLETLVSHLSLQ-TDGVFHRALADAEMTAQLWTAMIGELKE 172


>gi|153000864|ref|YP_001366545.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185]
 gi|160875572|ref|YP_001554888.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195]
 gi|151365482|gb|ABS08482.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185]
 gi|160861094|gb|ABX49628.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195]
 gi|315267759|gb|ADT94612.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678]
          Length = 208

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/211 (29%), Positives = 99/211 (46%), Gaps = 11/211 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M        +V D ETTGL   + DR IEIGAV + D   T R F   + P G + S   
Sbjct: 1   MPTSAANTLVVLDFETTGLSPNQGDRAIEIGAVLIEDGVITQR-FSELMNP-GFRISRFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GI+++ L+D    + + + F DF  + N   +AHNA FD  F++AE  +I    L 
Sbjct: 59  EDYTGISNQMLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYL- 115

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +   +L +ARR + ++ N  L +L  RY    +  + H AL D+ +   +++ M+   
Sbjct: 116 -GQFGCSLLVARRLYQAAPNHQLGTLV-RYKQLPTDGTFHRALADAEMTGHLWLAMLADL 173

Query: 179 SQINFGFKTNEDRFFKE-EKKTVPNISLLKR 208
            Q  FG  +      ++  KKT   +    R
Sbjct: 174 QQ-EFGLCSPTFELLQKLAKKTKAEVPKFLR 203


>gi|322390849|ref|ZP_08064359.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
 gi|321142519|gb|EFX37987.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
          Length = 1464

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N+   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 419 LDLNEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVI-EEFDEFIDP-GHPLSAFTTQ 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT+E ++       +  EF  F   +    +AHNA FDVGF+NA  +R    P    
Sbjct: 477 LTGITNEHVRGAKPLVQVLKEFQAFC--EGTVLVAHNATFDVGFMNANYERHGL-PKITQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 534 PVIDTLEFARNLYPDFKRHGLGPLTKRFGVGLEHH--HMANYDAEATGRLL 582


>gi|315504521|ref|YP_004083408.1| DNA polymerase iii, epsilon subunit [Micromonospora sp. L5]
 gi|315411140|gb|ADU09257.1| DNA polymerase III, epsilon subunit [Micromonospora sp. L5]
          Length = 584

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 101/255 (39%), Gaps = 25/255 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       I EIGAV++    +        + P G    P    L GIT  
Sbjct: 32  FVVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITQA 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P    +   F +F +  +A  +AHNA +DVGF+ A   +      +P R++DT +
Sbjct: 90  MLLPAPPIEQVLPSFLEFIS--DAVLVAHNAPYDVGFLKAACAKHGYRWPNP-RVLDTAA 146

Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +ARR           L +L   +    + +  H AL D+    DV   ++  +GG ++  
Sbjct: 147 LARRVLTRDEVPNRKLGTLAAYF--RTATQPTHRALDDAKATVDVLHGLIGRLGGHRVGT 204

Query: 184 GFKTNE-----------DRFFKEEKKTVPNISLLKR--DKPLFTRITKEELDEHDKTIQT 230
             +  E            R   +    VP + + +   D+PL+   + +           
Sbjct: 205 VGEAIEFARAVTPTQRRKRHLADGLPKVPGVYIFRAADDRPLYVGTSGDIATRVRSYFTA 264

Query: 231 LGKNAIWDRYISSNQ 245
             K A     +++ +
Sbjct: 265 AEKRARISEMLAAAE 279


>gi|296877258|ref|ZP_06901298.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
 gi|296431778|gb|EFH17585.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
          Length = 1464

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N+   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 419 LDLNEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVI-EEFDEFIDP-GHPLSAFTTQ 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT+E ++       +  EF  F   +    +AHNA FDVGF+NA  +R    P    
Sbjct: 477 LTGITNEHVRGAKPLVQVLKEFQAFC--EGTVLVAHNATFDVGFMNANYERHGL-PKITQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 534 PVIDTLEFARNLYPDFKRHGLGPLTKRFGVGLEHH--HMANYDAEATGRLL 582


>gi|229820392|ref|YP_002881918.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM
           12333]
 gi|229566305|gb|ACQ80156.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM
           12333]
          Length = 590

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 14/215 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG     D I EIGAV +             + P GR   P    L GIT+ 
Sbjct: 32  FVVVDLETTGGSPNADAITEIGAVRVR-GGVVEGELGTLVDP-GRSIPPTITVLTGITNA 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P    +   F +F     A  +AHNA+FD GF+    +R+      P  ++DT+ 
Sbjct: 90  MVIGAPPIEEVLPSFLEF--AHGAVLVAHNARFDTGFLRVAAERMGLTWPKP-LVVDTVQ 146

Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-- 183
           +ARR   +  +  + L SL + +  +++    H AL D+    DV   ++   + +    
Sbjct: 147 LARRVVSRDEAPNHRLGSLARLFHASVT--PDHRALTDARATVDVLHGLLARMAPLGVTH 204

Query: 184 --GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
               +T  D    E ++ V     L     ++  +
Sbjct: 205 LEDLRTAGDSVPPERRRKVTLADGLPAAPGVYQFL 239


>gi|229104149|ref|ZP_04234821.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
 gi|228679166|gb|EEL33371.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
          Length = 315

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGF-PEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|116627026|ref|YP_819645.1| DNA polymerase III PolC [Streptococcus thermophilus LMD-9]
 gi|122268369|sp|Q03MX3|DPO3_STRTD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116100303|gb|ABJ65449.1| DNA polymerase III catalytic subunit, PolC type [Streptococcus
           thermophilus LMD-9]
 gi|312277486|gb|ADQ62143.1| DNA polymerase III polC-type [Streptococcus thermophilus ND03]
          Length = 1464

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   +   +VFD+ETTGL + ++ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 419 LELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIVEQ-FDEFIDP-GYPLSAFTTE 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +K       +  EF +F   + A  +AHNA FDVGF+NA  +R    P    
Sbjct: 477 LTGITDNHVKGAKPLVQVLQEFQEFC--KGAVLVAHNATFDVGFMNANYERHQL-PTISQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALDHH--HMANYDAEATGRLL 582


>gi|229117071|ref|ZP_04246451.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
 gi|228666360|gb|EEL21822.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
          Length = 315

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGF-PEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|228477790|ref|ZP_04062418.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus salivarius SK126]
 gi|228250482|gb|EEK09696.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus salivarius SK126]
          Length = 1464

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   +   +VFD+ETTGL + ++ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 419 LELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIIEQ-FDEFIDP-GHPLSAFTTE 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +K       +  EF +F   Q    +AHNA FDVGF+NA  +R    P    
Sbjct: 477 LTGITDNHVKGAKPLVQVLQEFQEFC--QGTVLVAHNATFDVGFMNANYERHQL-PTISQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALDHH--HMANYDAEATGRLL 582


>gi|239616641|ref|YP_002939963.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239505472|gb|ACR78959.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 185

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 8/169 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66
            +V D ETTG    + DRIIEI A+ +       +  F   + P  R        +HG+ 
Sbjct: 5   YVVIDTETTGPSPLRGDRIIEIAAIPIYRGKMFVDLAFHSLVNPQIR-IPAYISGIHGLK 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E +  +P+ S +F  F ++    NA  + H+ + D+ F +   + I   PL  ++ IDT
Sbjct: 64  NEDVTSEPTISDVFPRFKEYLG--NAIIVGHSIEVDMKFFDIACKEIGTFPLS-NQYIDT 120

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L IA+         L  L KR  I       H AL D+ +   V++ M+
Sbjct: 121 LKIAKDLFKEGSYSLAELAKRLKIK--DAPTHRALDDARVTGKVFLAMV 167


>gi|126174568|ref|YP_001050717.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155]
 gi|125997773|gb|ABN61848.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155]
          Length = 208

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/215 (29%), Positives = 100/215 (46%), Gaps = 11/215 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M        +V D ETTGL   + DR IEIGAV + D   T R F   + P G + S   
Sbjct: 1   MPTSAANTLVVLDFETTGLSPNQGDRAIEIGAVLIEDGVITQR-FSELMNP-GFRISRFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GI+++ L+D    + + + F DF  + N   +AHNA FD  F++AE  +I    L 
Sbjct: 59  EDYTGISNQMLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYL- 115

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +   +L +ARR + ++ N  L +L  RY    +  + H AL D+ +   +++ M+   
Sbjct: 116 -GQFGCSLLVARRLYQAAPNHQLGTLV-RYKQLPTDGTFHRALADAEMTGHLWLAMLADL 173

Query: 179 SQINFGFKTNEDRFFKE-EKKTVPNISLLKRDKPL 212
            Q  FG  +      ++  KKT   +    R   +
Sbjct: 174 QQ-EFGLCSPTFELLQKLAKKTKAEVPKFLRQYAV 207


>gi|171920237|ref|ZP_02690314.2| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 1 str. ATCC 27813]
 gi|171902634|gb|EDT48923.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 1 str. ATCC 27813]
          Length = 1442

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 5/173 (2%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +    ++FDIETTGL    D IIE GA+ + +  +     Q F+ P  ++ +     L
Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNL 461

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
             I+ E + +     +   +  + F+  N   +AHN   FD+ FIN  L +   +PL  +
Sbjct: 462 TNISQEMVNNAIDEKTALLKIKEIFD--NHILVAHNGINFDINFINQRLLKWGLEPL-KN 518

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDTL I+R  +P   + L ++CK+Y +  +    H A  D+ +L+D +  M
Sbjct: 519 PSIDTLMISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADAFKIM 571


>gi|24378642|ref|NP_720597.1| DNA polymerase III PolC [Streptococcus mutans UA159]
 gi|32469722|sp|Q8DWE0|DPO3_STRMU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|24376501|gb|AAN57903.1|AE014864_1 DNA polymerase III, alpha subunit [Streptococcus mutans UA159]
          Length = 1465

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 15/213 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N+   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S     
Sbjct: 418 MDMNEATYVVFDVETTGLSAINNDLIQIAASKMHKGNIVEQ-FDEFIDP-GHPLSQFTTD 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K     S +  EF  F   Q+   +AHNA FDVGF+NA  +R +  P    
Sbjct: 476 LTGITDQHVKGAKPISQVLQEFQSFC--QDTVLVAHNATFDVGFMNANYERHDL-PKITQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLLFIFLKEAKE 590

Query: 181 -------INFGFKTNEDRFFKEEKKTVPNISLL 206
                  ++   K  +D  +K+ +     I +L
Sbjct: 591 KHGVNNLLDLNTKIVDDNSYKKARVKHATIYVL 623


>gi|254482913|ref|ZP_05096149.1| exonuclease, DNA polymerase III, epsilon subunit family [marine
           gamma proteobacterium HTCC2148]
 gi|214036785|gb|EEB77456.1| exonuclease, DNA polymerase III, epsilon subunit family [marine
           gamma proteobacterium HTCC2148]
          Length = 206

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N    +V D ETTGL   + DR IEIGAV  ++  K    FQ  + P GR+         
Sbjct: 3   NADTVVVLDFETTGLSPGEGDRAIEIGAVR-IESGKVTARFQELMNP-GRRVDSFIESFT 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT+  L D    S +  +F DF  E N   +AHNA FD  F++AEL+RI        + 
Sbjct: 61  GITNLMLADARPCSDVMRDFADFIGEDN--LVAHNASFDKRFLDAELERIALSY--TGQF 116

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             ++  ARR    +  + L +L +   I +     H AL DS + + +++ M+
Sbjct: 117 SCSMLAARRIFQQAPDHKLGTLVEFMNIPVEG-VFHRALYDSEMTAKLWLAML 168


>gi|160944143|ref|ZP_02091373.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444819|gb|EDP21823.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1417

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 18/222 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD ETTGLD   + + EIGAV + +  +    F  F+ P G+  +P+  +L GIT+E
Sbjct: 397 FCVFDTETTGLDPGVEYLTEIGAVIIRNG-EVVEEFDTFVKP-GKPITPKITELTGITNE 454

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
            + D PS       F  F  ++    + HN   FD+ F+ A  +R           IDTL
Sbjct: 455 MVADAPSEKEALEAFLAFAGDR--ILVGHNVHAFDMRFLRAAAKRSGIKLEPT--YIDTL 510

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--------VGG 178
           ++A+  +P   N    ++ K   + +     H A  DS  L  ++  M+           
Sbjct: 511 TMAQTMYPGLHNYKQGTINKH--LELPAYEAHRACEDSAALGRIFCVMLNDLAEKEVTKV 568

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           S+IN G   N +   K+    +  +      K L+  +++  
Sbjct: 569 SEINTGLGGNREVLKKKYYHLIILVKNQMGLKNLYKIVSEAH 610


>gi|325103921|ref|YP_004273575.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145]
 gi|324972769|gb|ADY51753.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145]
          Length = 459

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 18/227 (7%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +    + DIETTG  +   R+ EI AV + D  +    +   + P  +        L GI
Sbjct: 4   RKNYAIVDIETTGAYAGGSRMTEI-AVLIHDGVQVVEEYHTLINPK-QSIPHYIQVLTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D+ + D P F ++ ++ +     Q+  ++AHN  FD  F++++L+        P   + 
Sbjct: 62  SDDMVSDAPEFENVAAKVFSLL--QDKIFVAHNVGFDYSFVHSQLRECGYYLRSP--KLC 117

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           T+ ++R+  P      L  LC+  GI I+ R  H A  D+   + ++ +++   ++ +  
Sbjct: 118 TVRLSRKCFPGLPSYSLGKLCQSLGIAINDR--HRAYGDARATAVLFGRILSADNEGHIQ 175

Query: 185 FKTNEDRFFKEEKKTVPNI---SLLKRDKPLFTRITKEELDEHDKTI 228
            +  +          VP      L +R    F R      D+H K I
Sbjct: 176 LQLKKGYKEHRLPSQVPLSEFEQLPERPGVYFFR------DKHGKLI 216


>gi|95929273|ref|ZP_01312017.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
 gi|95134771|gb|EAT16426.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
          Length = 217

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 9/171 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +   IV D ET+G+   + DR IE+GAV+ ++  +    F+  + P G + S    +  G
Sbjct: 7   QQDLIVLDFETSGMAPQRGDRAIEVGAVK-VNDGRIVDHFESLMNP-GFRVSSFIEEFTG 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT++ L+  P    +  +F +F     A  +AHNA FD  F+ +E  RI +  L   R  
Sbjct: 65  ITNDELRRAPRCEEVMHQFSEFIG--GAPLVAHNASFDQRFLKSEFARIGECKLL--RFG 120

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++ +ARR +P    + L +L     +  S    H AL D+ + + ++++M
Sbjct: 121 CSMLVARRLYPEAPNHKLATLVAYKNLP-SQGVFHRALADAEMTAHLWMEM 170


>gi|301167913|emb|CBW27498.1| putative DNA polymerase III PolC-type [Bacteriovorax marinus SJ]
          Length = 438

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 8/169 (4%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N +   VFD+ETTG + K+D+IIEIG V++ ++   ++     + P   K      KL  
Sbjct: 9   NNLEFCVFDLETTGGNHKSDKIIEIGLVKIKNFEVIDQK-NYLIQPEI-KIPEFIQKLTS 66

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I +E +KD P    +  E   F    ++  +AHN  FDV F N+ L+R+ K  L  ++ +
Sbjct: 67  IKEEDVKDSPVIEDVIDEILKFMG--DSILVAHNTSFDVPFFNSVLKRLGKPQL-KNKSL 123

Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            T  + +   P+  N  LN + K +GI   H+  H AL D+   +++ +
Sbjct: 124 CTNLMTKYLIPNLMNSNLNYMSKIFGIK--HKKAHRALDDALATAELLL 170


>gi|317502363|ref|ZP_07960529.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089964|ref|ZP_08338855.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896236|gb|EFV18341.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403102|gb|EGG82665.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 245

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 96/214 (44%), Gaps = 19/214 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FD+ETTGLD  N+ IIEIGA+++ D  K +  F  F+ P     SP    L GI+++
Sbjct: 5   YIAFDLETTGLDPMNNEIIEIGALKVRDG-KVSERFMEFIKPQ-ELISPAITGLTGISND 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +       S+ ++F DF  E     I HN  FD  F      R           IDTL 
Sbjct: 63  MVASARPARSVITDFIDFCEED--ILIGHNIIFDYSFTKCTAAREGLPFEKMG--IDTLK 118

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           IA++ HP      L++LC+ Y I   +++ H A  D+   + +Y  +       +  F+ 
Sbjct: 119 IAKKVHPELESKSLSALCEHYKIE--NKAAHRAYFDALATAKLYQTL-------SHYFEP 169

Query: 188 NEDRFFKEEK---KTVPNISLLKRDKPLFTRITK 218
           +  + FK  +   K         +   L  R+TK
Sbjct: 170 DNPKTFKPSQLTYKIRKPQPATPKQLALLERLTK 203


>gi|304408937|ref|ZP_07390558.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|307302940|ref|ZP_07582695.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
 gi|304352758|gb|EFM17155.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|306913300|gb|EFN43722.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
          Length = 208

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/211 (29%), Positives = 99/211 (46%), Gaps = 11/211 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M        +V D ETTGL   + DR IEIGAV + D   T R F   + P G + S   
Sbjct: 1   MPTSAANTLVVLDFETTGLSPNQGDRAIEIGAVLIEDGVITQR-FSELMNP-GFRISRFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GI+++ L+D    + + + F DF  + N   +AHNA FD  F++AE  +I    L 
Sbjct: 59  EDYTGISNQMLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYL- 115

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +   +L +ARR + ++ N  L +L  RY    +  + H AL D+ +   +++ M+   
Sbjct: 116 -GQFGCSLLVARRLYQAAPNHQLGTLV-RYKKLPTDGTFHRALADAEMTGYLWLAMLADL 173

Query: 179 SQINFGFKTNEDRFFKE-EKKTVPNISLLKR 208
            Q  FG         ++  KKT  ++    R
Sbjct: 174 QQ-EFGVNAPTFELLQKIAKKTKADVPKFLR 203


>gi|197294585|ref|YP_001799126.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
 gi|171853912|emb|CAM11875.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
          Length = 1530

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  S  D+IIEI  V++    K  + FQ  + P   K S   + +  ITD+
Sbjct: 450 YVVFDLETTGFSSTKDKIIEIAGVKIKHGKKI-QEFQALINPQ-EKLSQTIINITNITDD 507

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+ K +   +  +F +F   +N   +AHNA FD+ F+  +++ +      P  +IDT++
Sbjct: 508 MLEGKNTIDQVLPDFLNFI--ENCILVAHNATFDITFLKEKIKELGI-AYKPQPVIDTMT 564

Query: 129 IARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +++R          L  L   + + +     H AL D++  + V+IKM+
Sbjct: 565 LSQRFFSEFLKYFSLKRLATVFKVKME--EHHRALSDANTTAQVFIKMI 611


>gi|55820164|ref|YP_138606.1| DNA polymerase III PolC [Streptococcus thermophilus LMG 18311]
 gi|81561132|sp|Q5M6H0|DPO3_STRT2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|55736149|gb|AAV59791.1| DNA polymerase III alpha subunit [Streptococcus thermophilus LMG
           18311]
          Length = 1464

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   +   +VFD+ETTGL + ++ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 419 LELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIVEQ-FDEFIDP-GYPLSAFTTE 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +K       +  EF +F   + A  +AHNA FDVGF+NA  +R    P    
Sbjct: 477 LTGITDNHVKGAKPLVQVLQEFQEFC--KGAVLVAHNATFDVGFMNANYERHQL-PTISQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALDHH--HMANYDAEATGRLL 582


>gi|55822053|ref|YP_140494.1| DNA polymerase III PolC [Streptococcus thermophilus CNRZ1066]
 gi|81559957|sp|Q5M1Y0|DPO3_STRT1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|55738038|gb|AAV61679.1| DNA polymerase III alpha subunit [Streptococcus thermophilus
           CNRZ1066]
          Length = 1464

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   +   +VFD+ETTGL + ++ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 419 LELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIVEQ-FDEFIDP-GYPLSAFTTE 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +K       +  EF +F   + A  +AHNA FDVGF+NA  +R    P    
Sbjct: 477 LTGITDNHVKGAKPLVQVLQEFQEFC--KGAVLVAHNATFDVGFMNANYERHQL-PTISQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALDHH--HMANYDAEATGRLL 582


>gi|323489712|ref|ZP_08094939.1| ATP-dependent helicase dinG [Planococcus donghaensis MPA1U2]
 gi|323396843|gb|EGA89662.1| ATP-dependent helicase dinG [Planococcus donghaensis MPA1U2]
          Length = 920

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 9/183 (4%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            N  + +V DIETTG    K DRII++  V + +   T+ T+  F+ P GR        L
Sbjct: 1   MNTQKYVVVDIETTGHSPAKGDRIIQLAMVTIENGEITD-TYTEFINP-GRTIPLFIQDL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             ITD  + +  +F       ++    Q+A ++AHN  FD+ F+ AEL+R    P     
Sbjct: 59  TNITDADVAEAKAFEHYAQTVYE--KMQDAIFVAHNTNFDLPFLQAELKRSGL-PKWQGL 115

Query: 123 IIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +DT+ + R  +P++    L  +    GI +   S H A  D+   + ++++     + +
Sbjct: 116 TMDTVELVRLMYPTAFSFKLQDITSELGIPLE--SAHRADDDAMATALLFLRAKEDLASL 173

Query: 182 NFG 184
            + 
Sbjct: 174 PYA 176


>gi|312862610|ref|ZP_07722851.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus vestibularis F0396]
 gi|311101870|gb|EFQ60072.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus vestibularis F0396]
          Length = 1464

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   +   +VFD+ETTGL + ++ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 419 LELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIVEQ-FDEFIDP-GHPLSAFTTE 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +K       +  EF +F   Q    +AHNA FDVGF+NA  +R    P    
Sbjct: 477 LTGITDNHVKGAKPLVQVLQEFQEFC--QGTVLVAHNATFDVGFMNANYERHQL-PTISQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALDHH--HMANYDAEATGRLL 582


>gi|194333813|ref|YP_002015673.1| DNA polymerase III subunit epsilon [Prosthecochloris aestuarii DSM
           271]
 gi|194311631|gb|ACF46026.1| DNA polymerase III, epsilon subunit [Prosthecochloris aestuarii DSM
           271]
          Length = 208

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL  +  DR IEIGAV + +    +R FQ  + P G + S       GIT+E
Sbjct: 11  VVLDFETTGLSPQYGDRAIEIGAVLVEEGRIVDR-FQKLMNP-GFRISSFIEAYTGITNE 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK +     + ++F +F    N   +AHNA FD  F++ EL+R N+          +L 
Sbjct: 69  MLKGEACCEEVMAQFSEFIAGHN--IVAHNASFDKRFLDFELKRANRSYEGVC--CCSLL 124

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++RR +  S  + L +L    G+  +  S H AL D+ + + +++ M+
Sbjct: 125 VSRRIYQDSPNHKLQTLVSHAGVP-TIGSFHRALADAEMTAHLWLAMI 171


>gi|300773503|ref|ZP_07083372.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300759674|gb|EFK56501.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 469

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 9/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M         + DIETTG  + N  I EI A+ L D  +   ++Q  + P+ ++      
Sbjct: 5   MSVSESRIYAIVDIETTGGYAANSGITEI-AIYLHDGHQIIDSYQTLINPH-KEIPYHIQ 62

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GIT E L D PSF  + ++ + F   +N  ++AHN  FD  F+ A L+        P
Sbjct: 63  MLTGITPEMLTDAPSFEDVAADIYSFL--ENKVFVAHNVNFDYSFVYAHLKACGYQWKSP 120

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              + T+ +AR      S   L +LC+R  I IS R  H A  D+     ++ +++
Sbjct: 121 --KLCTVRLARNIFKGFSSYSLGNLCQRLDIPISDR--HRAAGDAKATVILFERIL 172


>gi|256384095|gb|ACU78665.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|256384927|gb|ACU79496.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|296455696|gb|ADH21931.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
          Length = 1482

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 5/169 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FD+ETTGL  + D IIE GA+E    +   +   + + P   K      KL  IT+
Sbjct: 434 RMVFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDILIKPK-AKLKAFTQKLTNITE 492

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L+DKPS    F +  +    ++A  +AHNA FD  F++   +++    L+ + IIDTL
Sbjct: 493 KMLEDKPSIEQAFKQINEII--KDAILVAHNANFDFTFLSYWSEKLGYGKLE-NTIIDTL 549

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +I+R  +P  + + L SL KR  I+      H    D+ +L+D+Y +M+
Sbjct: 550 TISRIIYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERML 598


>gi|148996698|ref|ZP_01824416.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70]
 gi|147757273|gb|EDK64312.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70]
          Length = 910

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R +  P    
Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|121998681|ref|YP_001003468.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1]
 gi|121590086|gb|ABM62666.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1]
          Length = 707

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 12/195 (6%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63
           ++  ++FD ETTGL   + D II I  V +++        F+  + P GR     ++K H
Sbjct: 511 QLSFVIFDTETTGLAPSEGDEIISIAGVRMVNGRILEGECFEQLVNP-GRPIPKASIKFH 569

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI DE + DKP  +++  +F  F    ++  +AHNA FD+ FI  +  +      +P  +
Sbjct: 570 GIRDEMVADKPGIATVLPQFSAFVG--DSVLVAHNAAFDMKFIRLKEGQCGLKFENP--V 625

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +DTL ++   H     + L ++  R G+ IS R  H AL D+ +  +++ +M+    +  
Sbjct: 626 LDTLLLSVFLHDHTPEHTLEAIANRLGVEISGR--HTALGDTLVTGEIFAQMLPLLEER- 682

Query: 183 FGFKTNEDRFFKEEK 197
            G  T  D     E+
Sbjct: 683 -GVTTLRDAINASEQ 696


>gi|312869005|ref|ZP_07729182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus oris PB013-T2-3]
 gi|311095431|gb|EFQ53698.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus oris PB013-T2-3]
          Length = 1444

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL +  D++IE+ AV++ +     R F  F+ P G   S +   L  ITDE
Sbjct: 423 YVIFDVETTGLSAIYDKVIELSAVKMKNGEVLAR-FDEFIDP-GFPLSEQTTNLTSITDE 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   +   +F  F DF   Q      HN  FD+GF+N   +R   + +    +IDTL 
Sbjct: 481 MVRGSKTEEEVFKMFKDFC--QGTIIAGHNVSFDMGFMNTGYRRHQMEEI-TEPVIDTLP 537

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR  +P+ R   LN+L K++ + + H   H A  D+     +  K +
Sbjct: 538 LARFLYPNMRGYRLNTLSKKFKVALEHH--HRANYDAEATGHLLYKFL 583


>gi|229151805|ref|ZP_04280004.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
 gi|228631618|gb|EEK88248.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
          Length = 318

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHAN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 127

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 128 LAKKYMKQAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170


>gi|42560899|ref|NP_975350.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|42492396|emb|CAE76992.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320644|gb|ADK69287.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           mycoides subsp. mycoides SC str. Gladysdale]
          Length = 1482

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 5/174 (2%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +    R + FD+ETTGL  + D IIE GA+E    +   +   + + P   K      KL
Sbjct: 429 KLKDARMVFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDILIKPKT-KLKAFTQKL 487

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             IT++ L+DKPS    F +  +    ++A  +AHNA FD  F++   +++    L+ + 
Sbjct: 488 TNITEKMLEDKPSIEQAFKQINEII--KDAILVAHNANFDFTFLSYWSEKLGYSKLE-NT 544

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IIDTL+I+R  +P  + + L SL KR  I+      H    D+ +L+D+Y +M+
Sbjct: 545 IIDTLTISRIIYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERML 598


>gi|225573157|ref|ZP_03781912.1| hypothetical protein RUMHYD_01348 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039486|gb|EEG49732.1| hypothetical protein RUMHYD_01348 [Blautia hydrogenotrophica DSM
           10507]
          Length = 234

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 93/211 (44%), Gaps = 16/211 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGLD + + IIEIGA+++ +  K    F  F+ P   + S     L GIT+E
Sbjct: 5   YVAFDVETTGLDPEQNEIIEIGALKVRNG-KVVERFMKFIRPT-EEISQTITDLTGITNE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +  S   +  EF DF  E     I HN  FD  F+      +  D +  S+ IDTL 
Sbjct: 63  MVVNAQSREQVIPEFLDFCRED--ILIGHNVAFDYSFMKMGALAVGLDFV--SQGIDTLK 118

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           IAR+ H       L  LC  Y I   +++ H A  D+   + +Y  +          F+ 
Sbjct: 119 IARKVHGDLESKSLERLCAYYQIE--NKAAHRAYHDALATAKLYQTL-------AHYFEE 169

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
            E   F+  +       +L   K     +TK
Sbjct: 170 KEPAVFQPMELYYKQKKILPASKRQVEFLTK 200


>gi|114319829|ref|YP_741512.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226223|gb|ABI56022.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 719

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 9/175 (5%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61
            +++  +VFD ETTGL   + D II IGAV L++     +  F+  + P  R     A +
Sbjct: 519 LDQLSCVVFDTETTGLSPARGDEIIAIGAVRLVNGRVLQDEYFEQLVKP-CRAIPDSATR 577

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            HGI++E +   P    +   F  F  E+ +  +AHNA FD+GF+     R       P 
Sbjct: 578 FHGISNEDVARAPEIGPVLRAFSRFIGEE-SVLVAHNAAFDMGFLRRAQARAGLAF--PQ 634

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DTL ++   H  S  + L  + +R G+ +  R  H AL D+ + +DV+ +M+
Sbjct: 635 PVLDTLLLSVYLHDHSPDHTLEGVAERLGVEVQKR--HSALADARVTADVFARMI 687


>gi|331265607|ref|YP_004325237.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
 gi|326682279|emb|CBY99896.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
          Length = 1463

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +
Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT + +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P    
Sbjct: 476 LTGITYDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581


>gi|209964314|ref|YP_002297229.1| exonuclease, putative [Rhodospirillum centenum SW]
 gi|209957780|gb|ACI98416.1| exonuclease, putative [Rhodospirillum centenum SW]
          Length = 699

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 10/175 (5%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALK 61
              +  +VFD ETTGL+  + D ++ +  V +++    T  TFQ  + P GR     +  
Sbjct: 501 LRSLSYVVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINP-GRAIPAASAA 559

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGITD  + + P   ++   F  F    +A  +AHNA FD+ F+  + +          
Sbjct: 560 IHGITDAMVAEAPRAEAVLPPFRAFVG--DAVLVAHNAAFDLKFLRLKQRAAGVRF--DG 615

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DT+ ++R+       + L+ L  R GI +  R  H A+ DS + + +++++M
Sbjct: 616 PVLDTMILSRQIQGDHGEHSLDGLAARLGIGLVDR--HSAMGDSLMTAAIFLRLM 668


>gi|319745868|gb|EFV98158.1| DNA polymerase III PolC [Streptococcus agalactiae ATCC 13813]
          Length = 1468

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 423 MNLHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSAFTTE 480

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  ++       +  EF +F   Q    +AHNA FDVGF+NA  +R N  PL   
Sbjct: 481 LTGITDNHVRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQ 537

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ + + H   H A  D+     + 
Sbjct: 538 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVALEHH--HMANYDAEATGRLL 586


>gi|194017045|ref|ZP_03055658.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           pumilus ATCC 7061]
 gi|194011651|gb|EDW21220.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           pumilus ATCC 7061]
          Length = 930

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 9/172 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
             R +V DIETTG    K D+II+I AV + +     R +  ++ P G+       +L G
Sbjct: 3   DQRFVVVDIETTGNSPKKGDKIIQIAAVVIENGQIVER-YSKYVNP-GKAIPGFIEQLTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I    + D   F  I  E +D    Q A ++AHN  FD+ F+N EL+   K+ LD    I
Sbjct: 61  IQQHMVDDAVFFEDIAQEVYDLI--QGAYFVAHNVHFDLNFLNDELKACGKNELDV-LAI 117

Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+ I+R  +P      L  L +   + + H   H A  D+ + + +++ ++
Sbjct: 118 DTVEISRILYPELEGYKLTELSEE--LMLPHDHPHRADSDAEVTAMLFLTLL 167


>gi|322517665|ref|ZP_08070529.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124]
 gi|322123697|gb|EFX95287.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124]
          Length = 1424

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   +   +VFD+ETTGL + ++ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 379 LELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIVEQ-FDEFIDP-GHPLSAFTTE 436

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +K       +  EF +F   Q    +AHNA FDVGF+NA  +R    P    
Sbjct: 437 LTGITDNHVKGAKPLVQVLQEFQEFC--QGTVLVAHNATFDVGFMNANYERHQL-PTILQ 493

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 494 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALDHH--HMANYDAEATGRLL 542


>gi|152967191|ref|YP_001362975.1| hypothetical protein Krad_3247 [Kineococcus radiotolerans SRS30216]
 gi|151361708|gb|ABS04711.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans
           SRS30216]
          Length = 601

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 84/204 (41%), Gaps = 11/204 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG    +  I EIGAV++         FQ  + P+          L GIT+ 
Sbjct: 28  FVVVDLETTGGAPADAGITEIGAVKVRGGQVLGE-FQTLVRPSS-PIPAFVQVLTGITNG 85

Query: 69  FLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +   PS + +   F +F   E+    +AHNA +D  F+ A  Q   + P    R++DT+
Sbjct: 86  MVATAPSLAQVLPAFLEFAGFERGTVLVAHNAPYDTSFLKAACQVTGR-PWPKPRVVDTV 144

Query: 128 SIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            +AR+           L +L + +G   +    H AL D+    DV   ++  G   N G
Sbjct: 145 VLARQLVDRDEAPDRKLGTLARLFGTATT--PDHRALHDARATVDVLHALL--GRVGNRG 200

Query: 185 FKTNEDRFFKEEKKTVPNISLLKR 208
             + ED          P     K 
Sbjct: 201 VHSLEDLSAFAATAVNPVRRAKKH 224


>gi|190576387|ref|YP_001974232.1| putative exonuclease [Stenotrophomonas maltophilia K279a]
 gi|190014309|emb|CAQ47956.1| putative exonuclease [Stenotrophomonas maltophilia K279a]
          Length = 169

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/166 (41%), Positives = 94/166 (56%), Gaps = 7/166 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D ETTG+  +   R+IEIGAVEL+D   T R F  +L P  RK    A ++HGI+
Sbjct: 3   RIVALDTETTGISHRLGHRVIEIGAVELIDGQLTGRQFHTYLQPQ-RKVDWGAQRVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDPSRII 124
           D  L  KP FSS  +E  +F   + +E +AHNA FDVGF++ EL+            RI 
Sbjct: 62  DAMLVGKPLFSSKAAELLEFL--RGSEMVAHNATFDVGFLDNELRLSGIPGTLAQHCRIT 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            +L +AR + P   N L+ + +R  I  S R  HGAL D+HLL+ V
Sbjct: 120 CSLKLARGRWPGQGNKLDDVLQRLRIP-SQRGLHGALKDAHLLAQV 164


>gi|42525158|ref|NP_970538.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
 gi|39577369|emb|CAE81192.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
          Length = 217

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/183 (32%), Positives = 89/183 (48%), Gaps = 12/183 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR I FD+ETTG     D+I+EIGAV  +D       F   + P  R   P A  ++GI+
Sbjct: 13  MRFIAFDLETTGTVPGVDQIVEIGAVRFIDGQP-EAIFATLIDP-LRPIPPGASAVNGIS 70

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +K KP   +I   F +F  E     +AHNA FD  F+ A++++          I+D+
Sbjct: 71  DDMVKGKPLIDTILPAFAEFCGED--VLVAHNAPFDSQFLIADIKKHE-TTAPRGVILDS 127

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----VGGSQI 181
           L IAR+  P      L +L +   I  S+   H A  D+  L  ++ +MM    +GG   
Sbjct: 128 LPIARKVFPGLPNYKLGTLVQHLKIPTSN--FHRAEEDATYLGHMFSQMMKRISIGGQAP 185

Query: 182 NFG 184
             G
Sbjct: 186 QVG 188


>gi|228909419|ref|ZP_04073244.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
 gi|228850196|gb|EEM95025.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
          Length = 318

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 127

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 128 LAKKYMKHAPNHKLETLKRILGIRLS---SHNAFDDCITCAAVYQK 170


>gi|22538049|ref|NP_688900.1| DNA polymerase III PolC [Streptococcus agalactiae 2603V/R]
 gi|25011937|ref|NP_736332.1| DNA polymerase III PolC [Streptococcus agalactiae NEM316]
 gi|76798733|ref|ZP_00780952.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 18RS21]
 gi|54036993|sp|P63984|DPO3_STRA5 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040954|sp|P63983|DPO3_STRA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|22534952|gb|AAN00773.1|AE014277_21 DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 2603V/R]
 gi|24413479|emb|CAD47557.1| DNA polymerase III (alpha subunit) [Streptococcus agalactiae
           NEM316]
 gi|76585912|gb|EAO62451.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 18RS21]
          Length = 1468

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 423 MNLHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSAFTTE 480

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  ++       +  EF +F   Q    +AHNA FDVGF+NA  +R N  PL   
Sbjct: 481 LTGITDNHVRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQ 537

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ + + H   H A  D+     + 
Sbjct: 538 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVALEHH--HMANYDAEATGRLL 586


>gi|146299725|ref|YP_001194316.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
 gi|146154143|gb|ABQ04997.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
          Length = 459

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG ++   RI EI  +   D       ++  + P  +   P    L GI +E
Sbjct: 6   YAIVDIETTGGNASGSRITEIAIIIH-DGKNVLDRYETLVNPE-QDIPPSIFGLTGINNE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P F  I  +  +   ++   ++AHN  FD  F++ +L++        ++ + T+ 
Sbjct: 64  MVANAPIFDDISEKVLEMLTDR--IFVAHNVNFDYSFVHHQLEQAGFKW--SAKKLCTVR 119

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            AR+  P      L +LC    I++ +R  H A  D+   + ++  ++ 
Sbjct: 120 AARKIKPGLGSYSLGNLCNSLNISLENR--HRAGGDADATAILFSLLLE 166


>gi|77412300|ref|ZP_00788615.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
 gi|77161647|gb|EAO72643.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
          Length = 1468

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 423 MNLHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSAFTTE 480

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  ++       +  EF +F   Q    +AHNA FDVGF+NA  +R N  PL   
Sbjct: 481 LTGITDNHVRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQ 537

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ + + H   H A  D+     + 
Sbjct: 538 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVALEHH--HMANYDAEATGRLL 586


>gi|331703357|ref|YP_004400044.1| DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. capri
           LC str. 95010]
 gi|328801912|emb|CBW54065.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 1482

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 5/169 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FD+ETTGL  + D IIE GA+E    +   +   + + P   K      KL  IT+
Sbjct: 434 RMVFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDILIKPKT-KLKAFTQKLTNITE 492

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L+DKPS    F +  +    ++A  +AHNA FD  F++   +++    L+ + IIDTL
Sbjct: 493 KMLEDKPSIEQAFKQINEII--KDAILVAHNANFDFTFLSYWSEKLGYGKLE-NTIIDTL 549

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +I+R  +P  + + L SL KR  I+      H    D+ +L+D+Y +M+
Sbjct: 550 TISRIIYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERML 598


>gi|77414701|ref|ZP_00790833.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 515]
 gi|77159245|gb|EAO70424.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 515]
          Length = 1036

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 423 MNLHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSAFTTE 480

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  ++       +  EF +F   Q    +AHNA FDVGF+NA  +R N  PL   
Sbjct: 481 LTGITDNHVRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQ 537

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ + + H   H A  D+     + 
Sbjct: 538 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVALEHH--HMANYDAEATGRLL 586


>gi|302869008|ref|YP_003837645.1| DNA polymerase III subunit epsilon [Micromonospora aurantiaca ATCC
           27029]
 gi|302571867|gb|ADL48069.1| DNA polymerase III, epsilon subunit [Micromonospora aurantiaca ATCC
           27029]
          Length = 584

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 101/255 (39%), Gaps = 25/255 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       I EIGAV++    +        + P G    P    L GIT  
Sbjct: 32  FVVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITQA 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P    +   F +F +  +A  +AHNA +DVGF+ A   +      +P R++DT +
Sbjct: 90  MLLPAPPIEQVLPSFLEFVS--DAVLVAHNAPYDVGFLKAACAKHGYRWPNP-RVLDTAA 146

Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +ARR           L +L   +    + +  H AL D+    DV   ++  +GG ++  
Sbjct: 147 LARRVLTRDEVPNRKLGTLAAYF--RTATQPTHRALDDAKATVDVLHGLIGRLGGHRVGT 204

Query: 184 GFKTNE-----------DRFFKEEKKTVPNISLLKR--DKPLFTRITKEELDEHDKTIQT 230
             +  E            R   +    VP + + +   D+PL+   + +           
Sbjct: 205 VGEAIEFARAVTPTQRRKRHLADGLPKVPGVYIFRAADDRPLYVGTSGDIATRVRSYFTA 264

Query: 231 LGKNAIWDRYISSNQ 245
             K A     +++ +
Sbjct: 265 AEKRARISEMLAAAE 279


>gi|170016990|ref|YP_001727909.1| DNA polymerase III, alpha subunit [Leuconostoc citreum KM20]
 gi|169803847|gb|ACA82465.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc
           citreum KM20]
          Length = 1437

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL +  D+IIE+ AV++   +  ++ F  ++ P G   S    +L  ITD 
Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVKMQMGNVIDK-FSEYINP-GFPLSDFTTELTSITDA 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +  +  SI S F  +   ++A  + HN  FD+GF+NA   R N+ P   + IIDTL 
Sbjct: 477 MVANADTEESIVSRFRAWV--RDAILVGHNVTFDIGFMNAAYSRYNQ-PDISNPIIDTLP 533

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R  +P  +   L ++ KR+ I +     H A+ DS     +  +++
Sbjct: 534 FTRWLYPDYKSYRLGTIAKRFNINLE--QAHRAIFDSETTGHIAWRLI 579


>gi|295100646|emb|CBK98191.1| DNA polymerase III catalytic subunit, PolC type [Faecalibacterium
           prausnitzii L2-6]
          Length = 1417

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 18/222 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD ETTGLD   + + EIGAV + +  +    F  F+ P G+  + +  +L GIT+E
Sbjct: 397 FCVFDTETTGLDPGVEYLTEIGAVIVRNG-EVVEEFDTFVKP-GKPITSKITELTGITNE 454

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
            + D PS +     F DF + +    + HNA  FD+ F+ A  +R   +       IDTL
Sbjct: 455 MVADAPSEAEALKAFLDFVDGR--ILVGHNAHSFDIRFLRAAAKRSGIEFEPT--YIDTL 510

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ------ 180
           ++A+  +P   N    ++ K   + +     H A  DS  L  ++  M+    +      
Sbjct: 511 TMAQAMYPGLHNYKQGTINKH--LELPAYEAHRACEDSAALGRIFCVMLKDLEEKQVTAV 568

Query: 181 --INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
             IN G   N +   K+    +  +      K L+  +++  
Sbjct: 569 SGINTGLGGNREVLKKKYYHLIILVRSQMGLKNLYKIVSEAH 610


>gi|210620723|ref|ZP_03292209.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275]
 gi|210155224|gb|EEA86230.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275]
          Length = 179

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IV D+ETTGL+      I    +  +   K  R++  F+ P  ++  P   +L GI++E
Sbjct: 13  FIVVDLETTGLNPFEGNEIIEIGITEIRNGKIVRSYSRFVKPE-QEIPPFITELTGISNE 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++ +   +   F  F        IAHNAKFD+ F+N  L ++  + +     I TL 
Sbjct: 72  MVANEDTIEQVLPRFRKFIGSN--TIIAHNAKFDIKFLNYYLNKLGLEEIKD--YICTLE 127

Query: 129 IARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + ++   +      L + C+ YGI   +++ H A  D+   +++++K+
Sbjct: 128 LLKKVSSYGGKNKKLATACEYYGIE--NKNAHRASSDTQATAELFLKI 173


>gi|288574409|ref|ZP_06392766.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570150|gb|EFC91707.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 193

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 7/170 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGL ++ DRI+EIGA+     S+T  +FQ F+ P GR    EA+ +HGITDE
Sbjct: 10  FVAIDVETTGLSNRWDRIVEIGAIRFTPGSET-ESFQTFVSP-GRPIPSEAVAIHGITDE 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P  S        F  ++    + HN  FD+GF++A ++ I     +   + DT  
Sbjct: 68  MVEGAPGLSEASIALASFLKDEE-PMVFHNPSFDLGFLDANMRAIKGSW-NVMPVFDTCG 125

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +AR+  P  +   L +L + +G  +S    H AL D    + ++  ++  
Sbjct: 126 LARKAFPGIKGYSLVALARHFG--LSGGGHHRALEDCRYSASLFNLILEA 173


>gi|291279025|ref|YP_003495860.1| hypothetical protein DEFDS_0623 [Deferribacter desulfuricans SSM1]
 gi|290753727|dbj|BAI80104.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 247

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 100/193 (51%), Gaps = 12/193 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  V D ETTGLD +  ++I I AV+++++ K    + VF+ P       E++K HGITD
Sbjct: 62  KFCVIDTETTGLDFETAKLINIAAVKVVNF-KILDIYDVFINPEI-PIPEESIKWHGITD 119

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +KDKP+ + I  +F  F   +++  + H+  FD+  IN +L+      +  +  IDT+
Sbjct: 120 DMVKDKPTVAEILPDFLKFI--RDSVIVGHHVNFDLKMINKDLKLYYGSEI-KNIWIDTM 176

Query: 128 SIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +  +          L+ L +++ +    R  H AL D+   ++V+ K++V       GF
Sbjct: 177 FLYSKNILCRDDHISLDFLLEKFNVKCIGR--HTALGDALATAEVFNKIVVKMKN---GF 231

Query: 186 KTNEDRFFKEEKK 198
           KT  D +  + K+
Sbjct: 232 KTVSDLYRSQFKE 244


>gi|30171791|gb|AAP20774.1| DNA polymerase III alpha subunit [Peanut witches'-broom
           phytoplasma]
          Length = 1492

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 7/173 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITD 67
            +V DIETTG     DRII I AV++ +       F   + P    K S    +L  I+D
Sbjct: 405 YVVLDIETTGFSKTRDRIISIAAVKIQNGKII-EYFDELINPGKDIKISNLIQRLTNISD 463

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           E L +KP    I S+F DF  +  N   +AHNA FD+ F+    + I         +IDT
Sbjct: 464 EILLNKPHIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYW-PLLPVIDT 522

Query: 127 LSIARRKH--PSSRNDLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKMMV 176
           L++A++          L  + K + I +      H AL D+   + ++++M+ 
Sbjct: 523 LTLAQKYFNKILKYFSLEKIVKSFKIKLDSEGQYHNALFDARATALIFLEMLE 575


>gi|75760700|ref|ZP_00740725.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228902109|ref|ZP_04066273.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
 gi|74491818|gb|EAO55009.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228857535|gb|EEN02031.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
          Length = 318

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 127

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170


>gi|218295641|ref|ZP_03496437.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
 gi|218243800|gb|EED10327.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
          Length = 627

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 14/177 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
              FD+ETTGLD + D II +GAV LL      +  ++  + P GR     + ++HG+T 
Sbjct: 443 YTAFDLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDP-GRPIPKASTEVHGLTW 501

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LKDKP    +   F  F   + +  +AHN  FD+ F+        K  +D   ++DTL
Sbjct: 502 EMLKDKPKLEEVLPAFRAFL--EGSVLVAHNGAFDMAFLR-------KVGIDQPPLVDTL 552

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            +A    P  + + L  L +R+G+ +  R  H AL D+ + ++VY +M+    +  F
Sbjct: 553 LLAHLLFPDLKDHRLERLAERFGVPVLGR--HTALGDALMTAEVYARMIPLLKERGF 607


>gi|47567894|ref|ZP_00238601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
 gi|47555372|gb|EAL13716.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
          Length = 303

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 9/169 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            +  +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GI
Sbjct: 10  PLNYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGI 67

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+  + D P+   +   F  F ++     +AHNA FD+ F+ + +  +   P   +++ID
Sbjct: 68  TNYRVSDAPTIEEVLPLFLAFLHKN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVID 124

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           T+ +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 TVFLAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170


>gi|319779076|ref|YP_004129989.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9]
 gi|317109100|gb|ADU91846.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9]
          Length = 186

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 105/190 (55%), Gaps = 17/190 (8%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR +  D ETTG       RIIE+G VE++   K+ R   ++  P+ R++   A ++H I
Sbjct: 1   MRYVCLDTETTGSKYYLGHRIIELGCVEVICGQKSGRELHMYFNPD-RRSDFGAFRVHKI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123
           +DEFL DKP F+    E  DF     +  + HNA FD+GF+N E +   +  L+     +
Sbjct: 60  SDEFLLDKPRFADCVDEIIDFL--YGSTLVIHNAPFDMGFLNYEFKISGQPKLNEFVVDV 117

Query: 124 IDTLSIAR-----RKHPSSRNDLNSLCKR-----YGITISHRSKHGALLDSHLLSDVYIK 173
           IDT+ + R     + HP+ R  L++L K      Y   + HR+ HGAL+D+ +L+D++I+
Sbjct: 118 IDTVILGRMKLPKKLHPNQRYSLDALYKTLVRSDYNPAL-HRNPHGALIDARMLADLFIR 176

Query: 174 MMVGGSQINF 183
           + +G  +I  
Sbjct: 177 LNMGQEEIPI 186


>gi|256847046|ref|ZP_05552492.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256715710|gb|EEU30685.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 1448

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL +  D++IE+ A ++ D    +R F  F+ P G   S +  +L  ITD+
Sbjct: 428 YVIFDVETTGLSAIYDKVIELSATKMKDGKVLDR-FDEFIDP-GFPLSEQTTELTSITDD 485

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   S   +F  F DF     +    HN  FD+GF+N   QR +  P     +IDTL 
Sbjct: 486 MVQGSKSEEEVFKMFQDFCA--GSIIAGHNVSFDMGFMNTGYQRHHL-PEITQPVIDTLP 542

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR  +P  R   LN+L K++ +++ H   H A  D+     +    +
Sbjct: 543 LARFLYPDLRGYRLNTLSKKFKVSLEHH--HRANYDAEATGHLLHIFL 588


>gi|291548851|emb|CBL25113.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Ruminococcus torques L2-14]
          Length = 231

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FD+ETTGL  +   IIEIGA+++ +    +R F  F+ P+ +  +P    +  IT++
Sbjct: 5   YIAFDLETTGLSPQEHEIIEIGALKVREGKVVDR-FMEFVHPD-KPITPMITNITHITND 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    S   +  +F  F   ++   I HN  FD  F+     R           IDTL 
Sbjct: 63  MVAGARSCPEVIHDFLSFC--EDDVLIGHNVMFDYSFVKCSAVREGLTFEKMG--IDTLK 118

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           IAR+ H       L +LC  Y I     + H A  D+   + +Y  +
Sbjct: 119 IARKVHKDFESKSLGALCDYYHIENP--AAHRAYYDALATAKLYQTL 163


>gi|78044072|ref|YP_360592.1| DNA polymerase III subunit alpha [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996187|gb|ABB15086.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 1407

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 97/176 (55%), Gaps = 10/176 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   +   + FD ET+GL S+ D IIEIGAV++ D  +   TF V + P  +  S +  +
Sbjct: 387 LSLKETPIVAFDFETSGLSSQRDEIIEIGAVKIFDG-EIKETFSVLIRPQ-KPISAKISE 444

Query: 62  LHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           L GIT++ L K+   F     +F  F +   +  +AHNA FD GF+   L+R+  +    
Sbjct: 445 LTGITNDLLEKEGLDFGEAIEKFLRFCD--GSILLAHNAAFDYGFLRQALKRLGHE--RK 500

Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             ++D L++ R   P  + + L ++ +   +++++   H AL DS+ L++V++K++
Sbjct: 501 FSVVDNLALVRILFPELKNHKLKTITEHLEVSLNNH--HRALADSYALAEVFLKLL 554


>gi|313674131|ref|YP_004052127.1| DNA polymerase iii, epsilon subunit [Marivirga tractuosa DSM 4126]
 gi|312940829|gb|ADR20019.1| DNA polymerase III, epsilon subunit [Marivirga tractuosa DSM 4126]
          Length = 465

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG  +  +RI EI  +   D  K  + +Q  + P  R   P+   +HGI D+
Sbjct: 2   YAIVDIETTGGYAARNRICEIAIILH-DGEKVVKEYQTLINPE-RHIPPQLSAIHGINDQ 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P F        +    +   ++AH+  FD  F+ A  Q +  +     + + T+ 
Sbjct: 60  MVEDAPKFYEEAKTIHELL--EGNIFVAHSVNFDYSFVKAAFQDLGYELKL--KKLCTVR 115

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R+  P  +   L ++C+  GI I+ R  H A  D+   ++++ +++
Sbjct: 116 LSRKIFPGLKSYSLGNICENRGIKINDR--HRAFGDAIATAELFTQLV 161


>gi|194367724|ref|YP_002030334.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
           R551-3]
 gi|194350528|gb|ACF53651.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 169

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/166 (41%), Positives = 94/166 (56%), Gaps = 7/166 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D ETTG+  +   R+IEIGAVEL+D   T R F  +L P  RK    A ++HGI+
Sbjct: 3   RIVALDTETTGISHRLGHRVIEIGAVELIDGQLTGRQFHTYLQPQ-RKVDWGAQRVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDPSRII 124
           D  L  KP FSS  +E  DF   + +E +AHNA FDVGF++ EL+            RI 
Sbjct: 62  DAMLVGKPLFSSKAAELLDFL--RGSEMVAHNATFDVGFLDNELRLAGIPGTLAQHCRIT 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            +L +AR + P   N L+ + +R  I   +R  HGAL D+HLL+ V
Sbjct: 120 CSLKLARGRWPGQGNKLDDVLQRLRIP-GNRGLHGALKDAHLLAQV 164


>gi|260061966|ref|YP_003195046.1| DNA polymerase III subunit epsilon [Robiginitalea biformata
           HTCC2501]
 gi|88783528|gb|EAR14699.1| DNA polymerase III, epsilon subunit [Robiginitalea biformata
           HTCC2501]
          Length = 456

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 11/186 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG     +RI EI A+  +D  +   ++   + P G +       L GIT  
Sbjct: 2   YTVVDIETTGNGIYGNRITEI-ALFNIDQGRIADSYSTLVNP-GCEIPAFITGLTGITTA 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P FS I  +   F       ++AH+  FD   +  E +R   D     + + T+ 
Sbjct: 60  MVRNAPDFSEIAPKIDAF--SSGRVFVAHSVNFDYPIVRKEFERCGLDF--GRKKLCTVR 115

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV--GGSQINFGF 185
           ++RR  P  R   L  LC+   I +S R  H A  D+   + + ++ M   GG     GF
Sbjct: 116 LSRRVFPGLRSYSLGKLCRSLEIPLSDR--HRAAGDARATALLLLRAMEQPGGQDTIAGF 173

Query: 186 KTNEDR 191
                R
Sbjct: 174 LNARSR 179


>gi|110678446|ref|YP_681453.1| exonuclease, putative [Roseobacter denitrificans OCh 114]
 gi|109454562|gb|ABG30767.1| exonuclease, putative [Roseobacter denitrificans OCh 114]
          Length = 465

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 86/176 (48%), Gaps = 7/176 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60
            R   +  +VFD ETTGLD   D ++++GAV +++        F   + P GR   P + 
Sbjct: 266 TRLRDLTFVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNP-GRTIPPGST 324

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +H I+D  + D P F      F  F   ++A  +AHNA FD+ F+  + +  ++D    
Sbjct: 325 AVHQISDAMVADAPGFDVACRAFHQF--AEHAVIVAHNAPFDMAFLRRQCR--DQDYAFD 380

Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + I+DT+ ++      S  + L++LC R  + I    +H  L D+   +   + ++
Sbjct: 381 NPILDTVHLSAVVFGGSAEHTLDALCDRLNVHIPDDVRHTGLGDALATAKALVALI 436


>gi|296110428|ref|YP_003620809.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc
           kimchii IMSNU 11154]
 gi|295831959|gb|ADG39840.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc
           kimchii IMSNU 11154]
          Length = 1437

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL +  D+IIE+ AV+ +        F  ++ P G   S    KL  ITD 
Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVK-MQLGNVIEKFSEYINP-GFPLSDFTTKLTSITDT 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    +  +I + F  +    +A  I HN  FD+GF+NA   R N+  +  + +IDTL 
Sbjct: 477 MVAHADTEENIITRFRKWIG--DAVLIGHNVTFDIGFMNAAYARYNQTVI-KNPVIDTLP 533

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R  +P  +   L +L KR+ I +     H A+ D+     +  +++
Sbjct: 534 FTRWLYPDYKSYRLGTLAKRFNINLE--QAHRAIFDAETTGHIAWRLI 579


>gi|228959796|ref|ZP_04121471.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228799926|gb|EEM46868.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 318

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 127

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170


>gi|41408028|ref|NP_960864.1| hypothetical protein MAP1930 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396383|gb|AAS04247.1| hypothetical protein MAP_1930 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 643

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 26/228 (11%)

Query: 4   KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
                 +V D+ETTG  S +      D I EIGAV++         F   + P  R   P
Sbjct: 35  LRDTTFVVVDLETTGGRSTSTEETAPDAITEIGAVKVRGGVVLGE-FATLVDPQ-RSIPP 92

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKD 116
           + ++L GIT   + D P+  ++   F +F   ++ A  +AHNA FDVGF+ A  Q+ +  
Sbjct: 93  QIMRLTGITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIA 152

Query: 117 PLDPSRIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              P R++ T+ +ARR   +  +    L SL + + +T   +  H AL D+    DV   
Sbjct: 153 WPRP-RVLCTVRLARRVLSREEAPSVRLASLARLFAVTT--QPTHRALDDARATVDVLHA 209

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           ++      N G  T     + + +  +P+++  +R K    R+  E L
Sbjct: 210 LIERVG--NQGVHT-----YADLRGYLPDVTPTQRRK----RVLAEGL 246


>gi|119357378|ref|YP_912022.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354727|gb|ABL65598.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides
           DSM 266]
          Length = 219

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 9/177 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M R      +V D ETTGL  +  DR IEIGAV L+++ +    +Q  + P G + S   
Sbjct: 1   MHRTMADSVVVLDFETTGLSPQYGDRAIEIGAV-LVEHGEIVDRYQKLMNP-GFRISRFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+E L  +P    + +EF +F    N   +AHNA FD  F++ EL+R  +  + 
Sbjct: 59  ESYTGITNEMLSGQPCCEEVMTEFSEFIAGHN--IVAHNASFDRRFLDFELKRAKR--VY 114

Query: 120 PSRIIDTLSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 +L ++RR +  S  + L +L    GI     S H AL D+ + + +++ M+
Sbjct: 115 EGACCCSLLVSRRIYQDSPNHKLQTLVSHAGIP-EIGSFHRALADAEMTAHLWMSMI 170


>gi|284040095|ref|YP_003390025.1| DNA polymerase III subunit epsilon [Spirosoma linguale DSM 74]
 gi|283819388|gb|ADB41226.1| DNA polymerase III, epsilon subunit [Spirosoma linguale DSM 74]
          Length = 180

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + D+ETTG      R+ EI      D  +   +F   L P G    P    L GI+DE
Sbjct: 2   YCIVDVETTGGVKGPTRLTEIAIFRH-DGQQVVDSFHSLLNP-GCPIPPFIRHLTGISDE 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P+F+ + ++  +    Q+A ++AHN  FD  FI  EL  +  D L   R + T+ 
Sbjct: 60  MVQDAPTFADVANDVLNI--TQDAIFVAHNVGFDFSFIQKELNWLGHDFL--RRTLCTVR 115

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +R+  P      L  LC+   I ++ R  H A  D+     ++  ++   +Q
Sbjct: 116 TSRKLLPGYPSYSLGKLCRSLEIPLNGR--HRAQGDAAATVLLFEMLLKNDAQ 166


>gi|116617801|ref|YP_818172.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096648|gb|ABJ61799.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 1437

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL +  DRIIE+ AV+ +        F  ++ P G   S    KL  ITD 
Sbjct: 419 FVAFDLETTGLSAVTDRIIELSAVK-MQLGNVIEKFSEYINP-GFPLSEFTTKLTSITDA 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +  +  +I   F ++    NA  + HN  FDVGF+NA   R N+ P+  + IIDTL 
Sbjct: 477 MVANSDTEENIIKRFREW--SGNAVLVGHNVTFDVGFMNAAYTRYNQ-PIITNAIIDTLP 533

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R  +P  +   L ++ KR+ I +     H A+ D+     +  +++
Sbjct: 534 FTRWLYPDYKSYRLGTIAKRFNINLE--QAHRAIFDAETTGHIAWRLI 579


>gi|119387836|ref|YP_918870.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119378411|gb|ABL73174.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 706

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61
             ++   VFD ETTGL+  + D II+IGA+ +L+        F   + P GR+  PE++ 
Sbjct: 511 LERLSYTVFDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDP-GREIPPESIP 569

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            HGI  E ++ +P  + +   F  +    +   + HN  FD+ F+  +          P 
Sbjct: 570 YHGIHPEMVQGQPRIAEVLPAFHAY--ASDTVLVGHNVAFDMRFLQLKEAATGLRFDQP- 626

Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DTL +A    P    + L ++  R G+ I+ R  H AL D+ + ++V+++++
Sbjct: 627 -VLDTLLLASIAQPHEPSHSLEAIAARLGVEITQR--HNALSDALVTAEVFLRLL 678


>gi|228922317|ref|ZP_04085624.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837372|gb|EEM82706.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 318

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 127

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170


>gi|296140382|ref|YP_003647625.1| DNA polymerase III subunit epsilon [Tsukamurella paurometabola DSM
           20162]
 gi|296028516|gb|ADG79286.1| DNA polymerase III, epsilon subunit [Tsukamurella paurometabola DSM
           20162]
          Length = 610

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 97/222 (43%), Gaps = 23/222 (10%)

Query: 4   KNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             ++  +V D+ETTG   K  D I EIGAV++         F   + P  R  +P    L
Sbjct: 17  LREVTFVVVDLETTGGSPKGGDAITEIGAVKVRGGEVLGE-FATLVDPE-RGIAPHITHL 74

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT   +   P+ +S+   F +F   Q A  +AHNA+FD+GF+ A        P    +
Sbjct: 75  TGITTAMVTGAPTIASVLPAFLEF--AQGAVLVAHNARFDIGFLKAAAAATG-TPWPKPQ 131

Query: 123 IIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            + T+ +ARR           L+ + + +    +    H AL D+    DV   ++  G 
Sbjct: 132 TLCTVQLARRVLTRDEAPSVKLSEMARLFRAETT--PTHRALDDARATVDVLHGLI--GR 187

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDK-----PLFTRI 216
             N G +T     F E +  +P+++  +R K     PL  R 
Sbjct: 188 VGNLGIRT-----FAELRGHLPSVTPQQRAKRGLADPLPERP 224


>gi|326692542|ref|ZP_08229547.1| DNA polymerase III, alpha subunit [Leuconostoc argentinum KCTC
           3773]
          Length = 1437

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 8/173 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL +  D+IIE+ AV++   +  ++ F  ++ P G   S    +L  ITD 
Sbjct: 419 FVAFDLETTGLSAVTDKIIELSAVKMQLGNVVDQ-FSEYINP-GFPLSEFTTELTSITDS 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +    S +   F D+    +A  I HN  FD+GF+NA   R  + P   + +IDTL 
Sbjct: 477 MVANADPESDVIQRFRDWVG--DAVLIGHNVTFDIGFMNAAYARY-QKPAIGNPVIDTLP 533

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             R  +P  +   L ++ KR+ I +     H A+ DS     +  ++M    +
Sbjct: 534 FTRWLYPDYKSYRLGTIAKRFNINLE--QAHRAIFDSETTGHIAWRLMKEAKE 584


>gi|315640656|ref|ZP_07895761.1| DNA polymerase III [Enterococcus italicus DSM 15952]
 gi|315483595|gb|EFU74086.1| DNA polymerase III [Enterococcus italicus DSM 15952]
          Length = 911

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 8/176 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG + K DRI + G V + +     R F   + P GR  SP+   L   T++
Sbjct: 4   YAIVDIETTGTNPKEDRIFQFGCVFVENGEIVGR-FATMIHP-GRSISPQIQHLTHTTNK 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++  +     ++AHN  FD  F+NAEL+R   + L   + IDT+ 
Sbjct: 62  DVRHSPYFEDVAPTIYELLS--GTVFVAHNIHFDYRFLNAELERCGCERL-QLKGIDTVE 118

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +A+   P+     L+ L +  G  ++H   H A  D+ + + ++I +    + +  
Sbjct: 119 LAQILFPTEISFRLSDLSESLG--LAHERPHQADSDAEVTAQLFIALEQRLASLPL 172


>gi|163782848|ref|ZP_02177844.1| DNA polymerase III epsilon subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881969|gb|EDP75477.1| DNA polymerase III epsilon subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 194

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 9/178 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG D  +  II+IGAV  ++      TF   + P G        +L GIT+ 
Sbjct: 10  FVAIDVETTGFDVNHAEIIDIGAVR-VEGGIITETFSSLVDP-GFFIPDRIKELTGITNA 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P    +   F DF    ++  + H+   D+ FI+   +   +        I TL 
Sbjct: 68  MLVGSPKMIEVLPRFMDFIG--DSIIVGHHISQDIKFIDKYTRLYGEGKF-RRPYICTLE 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           ++R+  PS  R+ L  +   + +  S    H AL D+ + + V+++++      N+G 
Sbjct: 125 LSRKLLPSLPRHSLKEMADYFSVDYS--RLHRALDDALITAQVFLELLNLLWS-NYGI 179


>gi|269127278|ref|YP_003300648.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
           43183]
 gi|268312236|gb|ACY98610.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
           43183]
          Length = 605

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 13/208 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG    +  I E+GAV++    +    F   + P G    P    L GIT +
Sbjct: 44  FVVVDLETTGGSPADSAITEVGAVKVRGGERLGE-FATLVDP-GVPIPPFITALTGITQQ 101

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P  S++   F +F   +    +AHNA FD+GF+ A     +  P     ++DT  
Sbjct: 102 MVTNAPPMSAVLPAFLEF--ARGCVLVAHNAPFDIGFLRAACTAHDH-PWPAFPVVDTAD 158

Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +ARR           L +L + +         H AL D+    DV   ++      ++G 
Sbjct: 159 LARRVLTREEVPNCKLATLARYF--RTGTEPCHRALADARATVDVLHGLIERLG--SYGV 214

Query: 186 KTNED-RFFKEEKKTVPNISLLKRDKPL 212
            + E+ R F +             D   
Sbjct: 215 HSLEELRAFAKTPTPEQRRKRHLADGMP 242


>gi|77409408|ref|ZP_00786106.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae COH1]
 gi|77171990|gb|EAO75161.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae COH1]
          Length = 1468

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 423 MNLHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSDFTTE 480

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  ++       +  EF +F   Q    +AHNA FDVGF+NA  +R N  PL   
Sbjct: 481 LTGITDNHVRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQ 537

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ + + H   H A  D+     + 
Sbjct: 538 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVALEHH--HMANYDAEATGRLL 586


>gi|229111034|ref|ZP_04240593.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
 gi|228672397|gb|EEL27682.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
          Length = 318

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 127

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170


>gi|118478852|ref|YP_896003.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al
           Hakam]
 gi|196038559|ref|ZP_03105868.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           NVH0597-99]
 gi|196044683|ref|ZP_03111918.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB108]
 gi|225865592|ref|YP_002750970.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB102]
 gi|229092581|ref|ZP_04223732.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
 gi|229185845|ref|ZP_04313018.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
 gi|118418077|gb|ABK86496.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|196024718|gb|EDX63390.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB108]
 gi|196030967|gb|EDX69565.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           NVH0597-99]
 gi|225789766|gb|ACO29983.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB102]
 gi|228597557|gb|EEK55204.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
 gi|228690734|gb|EEL44510.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
          Length = 315

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVL 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|325955495|ref|YP_004239155.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
 gi|323438113|gb|ADX68577.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
          Length = 466

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIET G  + +  I EI A+ L +  +    +Q  + P  +        L GIT E
Sbjct: 11  YAIVDIETNGSAAAHGGITEI-AIFLHNGKEIIDEYQTLVNPE-KPIPFHIQTLTGITPE 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P F  +  + + +   + A ++AHN  FD  F++ +   +  D       + T+ 
Sbjct: 69  MLVDAPRFDEVAKDVYSYL--EKAIFVAHNVSFDFSFLHKQFLDVGIDWKPI--KLCTVR 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR+  P  +   L SLCK   I +  R  H A  D+   + ++ +++
Sbjct: 125 LARKIFPGYTSYSLGSLCKNLNIPLHDR--HRAAGDAKATTILFEQLL 170


>gi|77405656|ref|ZP_00782744.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae H36B]
 gi|77175729|gb|EAO78510.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae H36B]
          Length = 1468

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 423 MNLHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSDFTTE 480

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  ++       +  EF +F   Q    +AHNA FDVGF+NA  +R N  PL   
Sbjct: 481 LTGITDNHVRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQ 537

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ + + H   H A  D+     + 
Sbjct: 538 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVALEHH--HMANYDAEATGRLL 586


>gi|330469366|ref|YP_004407109.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
           AB-18-032]
 gi|328812337|gb|AEB46509.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
           AB-18-032]
          Length = 584

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 60/255 (23%), Positives = 103/255 (40%), Gaps = 25/255 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       I EIGAV++    +        + P G    P    L GIT+ 
Sbjct: 32  FVVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITEA 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   PS   +   F +F +  +A  +AHNA +DVGF+ A   R      +P R++DT +
Sbjct: 90  MLLPAPSIEQVLPSFLEFVS--DAVLVAHNAPYDVGFLKAACARHGYRWPNP-RVLDTAA 146

Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +ARR           L +L   +    +    H AL D+    DV   ++  +GG +++ 
Sbjct: 147 LARRVLLRDEVPNRKLGTLAAYF--RAATTPTHRALDDARATVDVLHGLIGRLGGHRVDT 204

Query: 184 GFKTNE-----------DRFFKEEKKTVPNISLLKR--DKPLFTRITKEELDEHDKTIQT 230
             +  E            R   +     P + + +   D+PL+   +++           
Sbjct: 205 IGEAIEFARAVTPTQRRKRHLADGLPRSPGVYIFRAADDRPLYVGTSRDIATRVRSYFTA 264

Query: 231 LGKNAIWDRYISSNQ 245
             K A     +++ +
Sbjct: 265 AEKRARISEMLAAAE 279


>gi|228914217|ref|ZP_04077833.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228845421|gb|EEM90456.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 927

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 10/166 (6%)

Query: 13  DIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI +  +
Sbjct: 2   DLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGIDESMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K  P F  +     +    Q A ++AHN  FD  F+  EL++     +     +DT+ +A
Sbjct: 60  KQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVDTVELA 116

Query: 131 RRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 117 QILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 160


>gi|218231342|ref|YP_002368423.1| DNA polymerase III subunit epsilon [Bacillus cereus B4264]
 gi|229146178|ref|ZP_04274553.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
 gi|296504117|ref|YP_003665817.1| DNA polymerase III subunit epsilon TlpA [Bacillus thuringiensis
           BMB171]
 gi|218159299|gb|ACK59291.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           B4264]
 gi|228637237|gb|EEK93692.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
 gi|296325169|gb|ADH08097.1| DNA polymerase III subunit epsilon tlpA [Bacillus thuringiensis
           BMB171]
          Length = 315

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +A++       + L +L +  GI +S    H A  D    + VY K + 
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQKCVA 170


>gi|228966505|ref|ZP_04127558.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793227|gb|EEM40777.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 315

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|218898703|ref|YP_002447114.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           G9842]
 gi|218544955|gb|ACK97349.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           G9842]
          Length = 315

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|76787214|ref|YP_330464.1| DNA polymerase III PolC [Streptococcus agalactiae A909]
 gi|76562271|gb|ABA44855.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae A909]
          Length = 1468

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 423 MNLHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSDFTTE 480

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  ++       +  EF +F   Q    +AHNA FDVGF+NA  +R N  PL   
Sbjct: 481 LTGITDNHVRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQ 537

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ + + H   H A  D+     + 
Sbjct: 538 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVALEHH--HMANYDAEATGRLL 586


>gi|228916240|ref|ZP_04079810.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843438|gb|EEM88516.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 315

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|183508608|ref|ZP_02958116.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
 gi|182676065|gb|EDT87970.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
          Length = 1442

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 5/167 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FDIETTGL    D IIE GAV + +  +     Q F+ P  ++ +     L  I+ E
Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAVIMQNNKQIGEKIQFFVKP-IQQINENVTNLTNISQE 467

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127
            + +     +   +  + F++     +AHN   FD+ FIN  L +   +PL  +  IDTL
Sbjct: 468 MVNNAIDEKTALLKIKEIFDDH--ILVAHNGINFDINFINQRLLKWGLEPL-KNPSIDTL 524

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            I+R  +P   + L ++CK+Y +  +    H A  D+ +L+DV+  M
Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEIAHRADYDAIVLTDVFKVM 571


>gi|162447117|ref|YP_001620249.1| DNA polymerase III subunit alpha [Acholeplasma laidlawii PG-8A]
 gi|161985224|gb|ABX80873.1| DNA polymerase III alpha subunit [Acholeplasma laidlawii PG-8A]
          Length = 1504

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 28/188 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFDIETTG     D+IIEI A ++         F+V + P  +  S    ++  ITDE
Sbjct: 412 YTVFDIETTGFSFTRDKIIEIAAYKVR-GGFIAERFEVLINPEEQ-LSETTKRITNITDE 469

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++++ +   +   F +F   +    +AHNA FD+GFI  + + +     +P  +IDTL+
Sbjct: 470 MVENEKTIEEVLPTFLEFI--KGTVLVAHNASFDIGFIYEKSRLLGLQH-EPFAVIDTLN 526

Query: 129 IARRKH---------------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           IAR  +                        R +L +L K + + +   + H A+ D++  
Sbjct: 527 IARYFYNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLE--AHHRAIYDAYAT 584

Query: 168 SDVYIKMM 175
           ++V++ M+
Sbjct: 585 AEVFLNML 592


>gi|229080815|ref|ZP_04213333.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
 gi|229191695|ref|ZP_04318674.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
 gi|228591857|gb|EEK49697.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
 gi|228702549|gb|EEL55017.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
          Length = 318

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 127

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170


>gi|326333554|ref|ZP_08199794.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae
           bacterium Broad-1]
 gi|325948663|gb|EGD40763.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae
           bacterium Broad-1]
          Length = 580

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 66/237 (27%), Positives = 99/237 (41%), Gaps = 30/237 (12%)

Query: 4   KNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
              +   V D+ETTG    N   I EIGAV++         FQ  + P+     P    L
Sbjct: 39  LRDLTFCVVDLETTGNSPDNGGMITEIGAVKVRGGEVLGE-FQTLVNPHTG-IPPSIAVL 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT+  +   P+  S+   F +F   +    +AHNA FDVGF+     +  + P     
Sbjct: 97  TGITNSMVASSPTIESVLPAFLEF--AEGCVLVAHNAPFDVGFLKHFAAKQER-PWPRFE 153

Query: 123 IIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           ++DT+ IARR   +  +  + L SL + +G   +    H AL D+    DV   MM    
Sbjct: 154 VLDTVKIARRVITRDEAPNHKLGSLARVFGSPTT--PNHRALQDARATVDVLHGMMERLG 211

Query: 180 QINFGFKTNED---------------RFFKEEKKTVPNISLLK--RDKPLFTRITKE 219
             N G  T ED               R   E+    P + L K  +D+ L+   +K+
Sbjct: 212 --NLGVLTLEDLAAFSAKVTTAQRKKRHLAEDLPHAPGVYLFKDSQDRVLYIGTSKD 266


>gi|229047293|ref|ZP_04192892.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
 gi|228724035|gb|EEL75381.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
          Length = 318

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 127

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170


>gi|315604561|ref|ZP_07879624.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313573|gb|EFU61627.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 525

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 84/214 (39%), Gaps = 12/214 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGL ++   I EIGAV + +       F   + P G    P    L GIT  
Sbjct: 10  WVVVDLETTGLGAR-AEITEIGAVRVREGRLC-EEFSSLVRPVG-PIPPAITALTGITPA 66

Query: 69  FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            ++     +++   F  +     +     +AHNA FD+GF+       +  P    R++D
Sbjct: 67  MVRGADPIATVLDRFLTWAGFEAKDPVVLVAHNAPFDIGFLRRAAAACSL-PWPRVRVVD 125

Query: 126 TLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           TL++AR   P      + L ++   +G   +    H AL D+   ++V +  +   +   
Sbjct: 126 TLALARLALPRPIVRNHKLATVASYFG--TATVPGHRALGDARATAEVLLGFVDLLAGAG 183

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                +      +     P       D P    +
Sbjct: 184 ASDVEDLVALSAQAPNVSPKTPSFVADLPPSPGV 217


>gi|331696575|ref|YP_004332814.1| DNA polymerase III subunit epsilon [Pseudonocardia dioxanivorans
           CB1190]
 gi|326951264|gb|AEA24961.1| DNA polymerase III, epsilon subunit [Pseudonocardia dioxanivorans
           CB1190]
          Length = 586

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 12/217 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
               ++  +V D+ETTG  S N  I EIGAV++             + P G    P  + 
Sbjct: 24  TPLREVTFVVLDLETTGGSSANHSITEIGAVKVRGGEVLGE-LATLVDP-GTGVPPGVVA 81

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT   +   P  + +     +F     A  +AHNA FD GF+ A  +R ++    P 
Sbjct: 82  LTGITTAMVTGAPRLAQVLPTLLEFMG--GAVLVAHNAPFDAGFLRAACERHDRRWPRP- 138

Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             + T  +AR            L +L + +G   + +  H AL D+    +V  +++   
Sbjct: 139 PQLCTARLARAVLSRAEAPSVRLGALARLFG--TATQPTHRALADARATVEVLHRLLERV 196

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
              N G ++ E+        +        R +    R
Sbjct: 197 G--NLGVQSLEELLALARGASAHRPPEQVRRRRTLAR 231


>gi|52141929|ref|YP_084901.1| DNA polymerase III subunit epsilon [Bacillus cereus E33L]
 gi|51975398|gb|AAU16948.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
          Length = 315

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 9/169 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            +  +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GI
Sbjct: 7   PLNYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGI 64

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+  + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++ID
Sbjct: 65  TNYRVSDAPTIEEVLPVFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVID 121

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           T+ +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 122 TVFLAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|82703123|ref|YP_412689.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
 gi|82411188|gb|ABB75297.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 463

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 10/170 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
               ++ D+ETTG    +DRIIEI  +   +  ++ R ++  + P G    P    L GI
Sbjct: 3   PFPYVILDLETTGGTPLHDRIIEIALIRFEEGMESER-WETLVNP-GISIPPFITHLTGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  +KD PSF  I    + F +   A   AHN +FD GF+  E +R+    L   R++ 
Sbjct: 61  SNGMVKDAPSFGDIAHRLYGFLD--GAVLAAHNVRFDYGFLKNEYRRMG--ALLQHRVLC 116

Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           T  ++R+ +P  + + L+++ +R+G+    R  H A+ D  L++  Y++M
Sbjct: 117 TARLSRKLYPQHKGHGLDAIMQRHGLKTEMR--HRAMGDVELVA-AYLEM 163


>gi|302518301|ref|ZP_07270643.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
 gi|302427196|gb|EFK99011.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
          Length = 329

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 12/206 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+      +    +    +   + P      P  + +HG+T E
Sbjct: 21  YAVVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTLVNPER---DPGPVWIHGLTSE 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  E     + +    +AHNA FD   +  E  R         R + T++
Sbjct: 77  VLEGAPLFPEIAEELSRRLDGR--VLVAHNAVFDWSMLAREYARAGI-TAPVRRRLCTIA 133

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+    P   + L +L   +G+    R  H AL D+ +L++ +   +   +        
Sbjct: 134 LAKELALPLPNHKLETLAAHFGVE--QRRAHHALDDARVLAEAFRPSLRAAALGGVRLPL 191

Query: 188 NEDRFFKE--EKKTVPNISLLKRDKP 211
            E R   E  +    P I      +P
Sbjct: 192 LECRPLTEWSDSPARPTIGRQYGSRP 217


>gi|227495535|ref|ZP_03925851.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226831082|gb|EEH63465.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 206

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 10/192 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
              +  +  DIETTGL   +D I E+ AV+     +   TF   + P GR+      +L 
Sbjct: 12  LENLTLVSVDIETTGL-GDSDAITELAAVKYQKG-QVVETFSSLVNP-GRQIPVFITRLT 68

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI ++ + D P+   +   F +F +   +  +AHNA+FD  F+     ++  +   P+  
Sbjct: 69  GIDNQLVADAPTLREVLPVFLEFCDFPRSVLLAHNARFDTRFLMNACAQLGLEWQFPAS- 127

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           IDT+  +R   P      + L +L   +GI   +   H AL D++   ++Y K ++    
Sbjct: 128 IDTVFFSRALLPRPQVQNHRLGTLAHHFGIKNPN--AHRALADAYTCLELY-KCLLDVLH 184

Query: 181 INFGFKTNEDRF 192
              G +  E  F
Sbjct: 185 AADGVELPEAVF 196


>gi|254821932|ref|ZP_05226933.1| hypothetical protein MintA_18512 [Mycobacterium intracellulare ATCC
           13950]
          Length = 323

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 104/222 (46%), Gaps = 22/222 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           +       +V D+ETTG  +K+      D I EIGAV++         F   + P  R  
Sbjct: 10  LSLRDTTFVVVDLETTGGRTKSAAGTEPDAITEIGAVKVRGGVVLGE-FATLIDPQ-RSI 67

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
            P+ ++L GIT   + D P+  ++   F +F   +Q A  +AHNA FD+GF+ A  QR +
Sbjct: 68  PPQVVRLTGITTAMVSDAPTIDAVLPMFLEFARLDQGAVLVAHNAGFDIGFLRAAAQRCD 127

Query: 115 KDPLDPSRIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                P +++ T+ +ARR   +  +    L SL + + +T   +  H AL D+    DV 
Sbjct: 128 IAWPRP-QVLCTVRLARRVLSREEAPSVRLASLARLFAVTT--QPTHRALDDARATVDVL 184

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
             ++      N G  T     + + +  +P+++  +R K + 
Sbjct: 185 HALIERVG--NQGVHT-----YADLRSYLPDVAPAQRRKRVL 219


>gi|118616866|ref|YP_905198.1| DNA polymerase [Mycobacterium ulcerans Agy99]
 gi|118568976|gb|ABL03727.1| DNA polymerase [Mycobacterium ulcerans Agy99]
          Length = 500

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 106/252 (42%), Gaps = 22/252 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTG  ++ DR++E+G V L         +   + P+       A + HGI   
Sbjct: 98  FAVLDFETTGFAAEYDRVVEVGLVLLSAEGDIEDEWSTLINPHR---DVGATERHGIRAR 154

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTL 127
            +   P+F +I        + +   ++AHN  FD  F+ AEL+R      +P    + T+
Sbjct: 155 DVLGAPAFEAIIPRLLR--DLRGRVFVAHNVNFDQRFLLAELRRAGVPLDNPWLTGLCTM 212

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGFK 186
             A R  P++   L   C   G+ ++    H AL D+   + +   ++   GS   +  +
Sbjct: 213 RWAGRLLPAASRKLPDCCDAAGVFLTD--AHRALADARATASLLKYLIDHCGSPPPWAKE 270

Query: 187 TNEDRFFKEEKKTVPNISLLKR-------DKP---LFTRITKEELDEHDKTIQT---LGK 233
            +    F+  +   P + L+ R        +P      RI      E D  +++   + +
Sbjct: 271 IDGAEDFEWPQVAGPEVRLVTRAAWGAAPPRPPAGWLDRIVARMPHEDDPRVESYLEILE 330

Query: 234 NAIWDRYISSNQ 245
           +A+ D Y+S ++
Sbjct: 331 SALLDCYLSCHE 342


>gi|86130357|ref|ZP_01048957.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
 gi|85819032|gb|EAQ40191.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
          Length = 466

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 9/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M         + D+ETTG     +RI E  AV L D    ++ F   + P  +   P   
Sbjct: 1   MTELAPTYHCIIDVETTGKGINGNRITEFCAVRLKDGEIIDK-FTSLVNPE-QYIPPFIT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GI D  ++D P F  I     +    + A ++AHN  FD   I  E +R+    +  
Sbjct: 59  NLTGIDDAMVEDAPLFEEIAQRVLEI--TEGAIFVAHNVNFDFNVIKGEFKRLGVSFV-- 114

Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            + + T+ ++R+  P+     L +LC   GI +++R  H A  D+     ++ +++
Sbjct: 115 RKKLCTVRLSRKLIPNLFSYSLGNLCASIGIPLNNR--HRAEGDTDATVILFKRLL 168


>gi|255316545|ref|ZP_05358128.1| DNA polymerase III PolC [Clostridium difficile QCD-76w55]
          Length = 285

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 13/177 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M+  N+   +V DIETT     K  RI+EIGAV++ +    +  F   + P   K   + 
Sbjct: 11  MLNYNE--FVVVDIETTAFSIQKGGRILEIGAVKIKNGEIVDN-FSTLVNPE-LKIPKKI 66

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPL 118
            +L  IT++ +KD P   ++  +F +F +  ++  +AHNA FD   F+   L  I     
Sbjct: 67  TELTKITNDMVKDAPYIGNVLQKFNEFIS--DSVIVAHNASFDWDRFLKPALATIGIK-- 122

Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +++DT+S+++   P   ++ L  LC    + +     H A+ D+   +  ++K+
Sbjct: 123 SSHKVMDTVSLSKFTFPDKKKHTLIDLCSYLEVPLEKN--HRAIDDAIATAKCFLKL 177


>gi|116694719|ref|YP_728930.1| exconuclease [Ralstonia eutropha H16]
 gi|113529218|emb|CAJ95565.1| Exconuclease [Ralstonia eutropha H16]
          Length = 528

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG D++ DRI EIG VE+         +   L P G    P   ++ GIT+E
Sbjct: 30  IVFVDLETTGADAQRDRITEIGVVEVGPDGII--EWDTLLDP-GMSIPPFIQRMTGITEE 86

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ +PSF S+     +    Q   ++AHNA+FD GF+    +R        + ++ T+ 
Sbjct: 87  MVRGQPSFESLAESLAERL--QGRLFVAHNARFDYGFLKNAFRRAGVTF--RADVLCTVR 142

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++R   PS  R+ L++L  R+G+T   R  H AL D+ LL   + K+
Sbjct: 143 LSRSLFPSVERHGLDALIARFGLTPKGR--HRALADAELLWQFWQKI 187


>gi|241895743|ref|ZP_04783039.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
 gi|241870786|gb|EER74537.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
          Length = 1437

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 89/163 (54%), Gaps = 8/163 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV+++  +     F  F+ P G   S   + L  ITD+
Sbjct: 421 YVVFDVETTGLSAAYDKVIELSAVKMVKGNVIAE-FSEFIDP-GFSLSQTTVDLTSITDD 478

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   S   +F+ F +F+   +A  + HN  FD+GF+N   +R     +  + +IDTL+
Sbjct: 479 MVRGSKSEKEVFTAFREFYG--DAILVGHNVTFDMGFMNEGYERHGMGSI-TNPVIDTLT 535

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +AR  +P+ R   LN+L K +G+ +     H A+ DS     +
Sbjct: 536 LARFLYPNMRSYRLNTLAKHFGVLLEQH--HRAIFDSETTGHL 576


>gi|302880064|ref|YP_003848628.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
 gi|302582853|gb|ADL56864.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
          Length = 204

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 10/192 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            V D ETTG+  +  DR  E+  V + D   ++R +Q  +   G    P    L GI++E
Sbjct: 5   AVIDFETTGMSPELGDRATEVAVVIVSDGKISSR-YQSLMN-TGAYIPPFIEDLTGISNE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P  + +  E  DF     A W+AHNA FD  F++AE  R+            ++ 
Sbjct: 63  MIRQAPPAAQVMKELADFVGA--APWVAHNASFDSRFLDAEWSRMGHR--REQAFACSML 118

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR +P S  + L +L +  G+  + R  H AL D+ + + ++++M+        G   
Sbjct: 119 LARRLYPDSPNHKLGTLVRFLGLPDTAR-HHRALADAEMTAHLWLRMVSDLKNRQ-GLDV 176

Query: 188 NEDRFFKEEKKT 199
               F +  +K 
Sbjct: 177 VTHEFLRALQKV 188


>gi|189349710|ref|YP_001945338.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
 gi|189333732|dbj|BAG42802.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 375

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 10/172 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +  D+ETTG      RI EIG VE+        T+   + P G+   P   +L 
Sbjct: 10  ASEQPLVFVDLETTGGTPAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQPIPPFIQQLT 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+D  ++D PSF+ +    ++  +     ++AHNA FD GF+ AE +R          +
Sbjct: 67  GISDAMVRDAPSFAELAPALFERLD--GKLFVAHNASFDRGFLRAEFERAGFAFNPD--V 122

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + T+ ++R   P  SR+ L++L  R+G+  +  ++H AL D+ LL   +  +
Sbjct: 123 LCTVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLLWQFWRHL 172


>gi|206969177|ref|ZP_03230132.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH1134]
 gi|229071110|ref|ZP_04204336.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
 gi|206736218|gb|EDZ53376.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH1134]
 gi|228712050|gb|EEL63999.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
          Length = 315

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|323126468|gb|ADX23765.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 1465

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L+      ++   F DF   +++  +AHNA FDVGF+NA  +R N  P    
Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHNL-PKITQ 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLRDARE 592


>gi|163732758|ref|ZP_02140203.1| exonuclease, putative [Roseobacter litoralis Och 149]
 gi|161394118|gb|EDQ18442.1| exonuclease, putative [Roseobacter litoralis Och 149]
          Length = 465

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 7/176 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60
            R   +  +VFD ETTGLD   D ++++GAV +++        F   + P GR   P + 
Sbjct: 266 TRLRDLTFVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNP-GRTIPPGST 324

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +H I D  + D P F      F  F   ++A  +AHNA FD+ F+  + +  N+D    
Sbjct: 325 AVHQINDAMVADAPGFDVACRAFHQF--AEHAVIVAHNAPFDMAFLRRQCR--NQDYAFD 380

Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + ++DT+ ++      S  + L++LC R  + I    +H  L D+   +   + ++
Sbjct: 381 NPVLDTVHLSAVVFGGSAEHTLDALCNRLNVHIPDDVRHTGLGDALATAKALVALI 436


>gi|254443946|ref|ZP_05057422.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Verrucomicrobiae bacterium DG1235]
 gi|198258254|gb|EDY82562.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Verrucomicrobiae bacterium DG1235]
          Length = 205

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV +     T R FQ  + P  R  S       GIT+ 
Sbjct: 8   VVLDFETTGLSPSLGDRAIEIGAVRIEGGEVTGR-FQELMNPGCR-ISGFIEDYTGITNG 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D      +   F +F    N   +AHNA FD  F++AEL RI++  +     + ++ 
Sbjct: 66  MLRDAEPCEVVMERFAEFIGGHN--LVAHNASFDQRFLDAELARISQRRV--GDFVCSML 121

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ARR    + N  L +L +    ++     H AL DS + + ++I+M+
Sbjct: 122 AARRLFQDAPNHQLGTLVRYANFSVDG-VFHRALYDSEMTTKLWIRML 168


>gi|251781676|ref|YP_002995978.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390305|dbj|BAH80764.1| DNA polymerase III subunit alpha [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 1465

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L+      ++   F DF   +++  +AHNA FDVGF+NA  +R N  P    
Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHNL-PKITQ 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLRDARE 592


>gi|49478968|ref|YP_037688.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|301055098|ref|YP_003793309.1| DNA polymerase III subunit epsilon [Bacillus anthracis CI]
 gi|49330524|gb|AAT61170.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|300377267|gb|ADK06171.1| DNA polymerase III subunit epsilon [Bacillus cereus biovar
           anthracis str. CI]
          Length = 315

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|229197718|ref|ZP_04324438.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
 gi|228585795|gb|EEK43893.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
          Length = 315

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|161525562|ref|YP_001580574.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
           17616]
 gi|160342991|gb|ABX16077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 398

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 10/172 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +  D+ETTG      RI EIG VE+        T+   + P G+   P   +L 
Sbjct: 33  ASEQPLVFVDLETTGGTPAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQPIPPFIQQLT 89

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+D  ++D PSF+ +    ++  +     ++AHNA FD GF+ AE +R          +
Sbjct: 90  GISDAMVRDAPSFAELAPALFERLD--GKLFVAHNASFDRGFLRAEFERAGFAFNPD--V 145

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + T+ ++R   P  SR+ L++L  R+G+  +  ++H AL D+ LL   +  +
Sbjct: 146 LCTVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLLWQFWRHL 195


>gi|229174271|ref|ZP_04301804.1| DNA polymerase III alpha subunit [Bacillus cereus MM3]
 gi|228609128|gb|EEK66417.1| DNA polymerase III alpha subunit [Bacillus cereus MM3]
          Length = 318

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      IAHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIIAHNASFDMRFLKSNVSMLGL-PEPQNKVIDTVF 127

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170


>gi|229128882|ref|ZP_04257858.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
 gi|228654587|gb|EEL10449.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
          Length = 318

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 127

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++    +  + L +L +  GI +S    H A  D    + VY K
Sbjct: 128 LAKKYMKHATNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170


>gi|90577496|ref|ZP_01233307.1| putative DNA polymerase III [Vibrio angustum S14]
 gi|90440582|gb|EAS65762.1| putative DNA polymerase III [Vibrio angustum S14]
          Length = 207

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 9/169 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   + DR IEIGAV+L++    ++ FQ  + P G + S       GI++ 
Sbjct: 11  VVLDFETTGLSPNQGDRAIEIGAVKLVNGEVVDQ-FQQLMNP-GFRVSSFIEGYTGISNN 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P  + +   F DF    +A  +AHNA FD  F++AEL  I +          ++ 
Sbjct: 69  MLRTAPPCNEVMDAFADFIG--DANLVAHNASFDQRFLDAELADIGR--YYTGTFTCSML 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           IARR +     + L +L     I   +   H AL DS + + +++ M+ 
Sbjct: 125 IARRLYQHAPNHKLGTLVDFKHIE-HNGVFHRALADSEMTARLWLVMIE 172


>gi|149376092|ref|ZP_01893858.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
 gi|149359729|gb|EDM48187.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
          Length = 483

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               DIETTG +  +DRI EIG       +     +Q  + P  R  SP    L GIT++
Sbjct: 13  FAFLDIETTGGNPSHDRITEIGIRFWRAGAVVGE-WQTLVNPETR-ISPFIESLTGITND 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P F  I          ++  ++AHNA+FD GFI AE +R+    L  ++++ T+ 
Sbjct: 71  MVADAPVFEDIAEVLEKQL--KDTIFVAHNARFDYGFIKAEFRRLGL--LFSAKVLCTVK 126

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++R+ +P   R+++++L +R+G  +    +H AL D   +   +   +V
Sbjct: 127 LSRKLYPGFRRHNMDALIERHG--LEQVQRHRALGDVAAMMAFFEHALV 173


>gi|228953879|ref|ZP_04115918.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805847|gb|EEM52427.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 315

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|228934882|ref|ZP_04097713.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824782|gb|EEM70583.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 315

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|297620852|ref|YP_003708989.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU
           86-1044]
 gi|297376153|gb|ADI37983.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU
           86-1044]
          Length = 231

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 11/169 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I +D ETTG+ +++DRI+EI A + +       + +  + P G     EA K+H ITD
Sbjct: 4   RPIFYDTETTGIKAEHDRIVEIAAYDPISGC----SLEELVNP-GIPIPKEASKVHHITD 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126
           + +KD P+F  +  +F +F +  +   IAHN   FDV F+  E +R   + +   R  DT
Sbjct: 59  DMVKDAPTFKEVGQKFIEFCSG-DVILIAHNNDNFDVHFLRHEFKRHALE-MPEWRFFDT 116

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L  ARR  P   R+ L  L + Y I  ++   H AL D  +L  V+ KM
Sbjct: 117 LKWARRYRPDLPRHALQFLREIYSIEANN--AHRALDDVIVLHKVFEKM 163


>gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
 gi|295827583|gb|EDY45420.2| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
          Length = 331

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 11/201 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+      +    +    +   + P      P  + +HG+T E
Sbjct: 19  YAVVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTLVNPER---DPGPVWIHGLTSE 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  E     + +    +AHNA FD   +  E  R         R + T++
Sbjct: 75  VLEGAPLFPEIAGELSRRLDGR--VLVAHNAVFDWSMLAREYARAGI-TAPVRRRLCTIA 131

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+    P   + L +L   +G+    R  H AL D+ +L++ +   +   +  N     
Sbjct: 132 LAKELALPLPNHKLETLAAHFGVE--QRRAHHALDDARVLAEAFRPSLRAAALGNVRLPL 189

Query: 188 NEDRFFKEEKKTVPNISLLKR 208
            E R   E   + P   ++ R
Sbjct: 190 LECRPLTEWSDS-PARPVIGR 209


>gi|194246813|ref|YP_002004452.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
 gi|193807170|emb|CAP18609.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
          Length = 1449

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 104/200 (52%), Gaps = 16/200 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N    ++FD ETTGL   ND+IIEI A+++ +    +  FQ  + P  ++ +P    L 
Sbjct: 404 LNLATYVIFDFETTGLSKINDQIIEIAAIKIQNNQIIDE-FQTLINPQ-QELTPFIENLT 461

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I+++ LK++P  ++I  +F  F   +N+  IAHN  FD+GF+  + ++     L+    
Sbjct: 462 NISNQDLKNQPLIATILPKFLKFC--ENSILIAHNISFDMGFLVNQTKKHLNLKLNL-PF 518

Query: 124 IDTLSIARRKHPS-SRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           IDTL++AR    S  R  +L SL K + I+  +   H A+ D  +   ++ +++      
Sbjct: 519 IDTLNLARYCLDSNLRYFNLKSLAKYFKISFENH--HRAMSDVLITKTIFQQLLN----- 571

Query: 182 NFGFKTNEDRFFKEEKKTVP 201
                T   +F+++ K T+P
Sbjct: 572 --YLLTKNIQFYQQLKLTLP 589


>gi|296166059|ref|ZP_06848506.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295898580|gb|EFG78139.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 648

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 27/227 (11%)

Query: 4   KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
                 +V D+ETTG  +K       D I EIGAV++         F   + P  R   P
Sbjct: 38  LRDTTFVVVDLETTGGRTKATGGNAPDAITEIGAVKVRGGVVLGE-FATLVDPE-RSIPP 95

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           + ++L GIT   + D P   ++   F +F    +A  +AHNA FD+GF+ A   R +   
Sbjct: 96  QIVRLTGITTAMVSDAPRIDAVLPMFLEFAG--DAVLVAHNAGFDIGFLRAAAARCDIAW 153

Query: 118 LDPSRIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P +++ T+ +ARR   +  +    L +L + + +  + +  H AL D+    +V   +
Sbjct: 154 PRP-KVLCTVRLARRVLSREEAPSVRLGALARLFAV--AAQPTHRALDDARATVEVLHAL 210

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           +      N G  T     + + +  +P+++  +R K    R+  E L
Sbjct: 211 IERVG--NQGVHT-----YADLRSYLPDVTPTQRRK----RVLAEGL 246


>gi|330999159|ref|ZP_08322878.1| putative DNA polymerase III, epsilon subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|329575359|gb|EGG56903.1| putative DNA polymerase III, epsilon subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 248

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 116/220 (52%), Gaps = 20/220 (9%)

Query: 22  KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFS 81
           + DRIIEIG VEL ++  T++ F  ++ P  R+   E +++H IT+EFL  KP F+ I  
Sbjct: 5   EGDRIIEIGCVELGEHGLTDKNFHEYIDPE-RQMEAEVIRVHKITNEFLVGKPKFADIAD 63

Query: 82  EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----SRIIDTLSIARRKHPSS 137
           +F +F   Q A  I HNA+FD+GF+N EL+++ K  ++       IID++ +A+   P  
Sbjct: 64  KFIEFV--QGARLIIHNAQFDIGFLNEELRKLGKPSMEEICGKDNIIDSMELAKAAFPQM 121

Query: 138 RNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKE 195
            N L++LCKR  I  + R K  HGALLD+ LL  VY+ +      +              
Sbjct: 122 HNSLDALCKRLEIDTTRRVKEGHGALLDAELLGQVYLVLKQQQGILEIDAAPVSADVHDI 181

Query: 196 EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
               +P             R T+E+L E+++ ++ + K A
Sbjct: 182 SDVELP-----------VIRATEEDLSENERVLEMVRKAA 210


>gi|90408002|ref|ZP_01216174.1| putative DNA polymerase III [Psychromonas sp. CNPT3]
 gi|90310846|gb|EAS38959.1| putative DNA polymerase III [Psychromonas sp. CNPT3]
          Length = 210

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 10/204 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M ++     +V D ETTGL   + DR IEIGAV +++   T++ FQ  + P  R NS   
Sbjct: 1   MNQRFADTIVVLDFETTGLSPNQGDRAIEIGAVRIVNGEVTDQ-FQALMNPGIRVNS-FI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT+  LK+  S S + ++F DF  + N   +AHNA FD  F++ EL  I++    
Sbjct: 59  EDYTGITNHMLKEAASCSDVMAQFCDFIGDDN--LLAHNASFDKKFLDNELDEISRT--Y 114

Query: 120 PSRIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 +L ++RR    S  + L +L K+  ++      H AL D+ + + +++ M+   
Sbjct: 115 QGEFTCSLLVSRRINIDSQSHSLGNLVKQLNLS-EEGGFHRALFDAQMTAKLWLHMLDNI 173

Query: 179 SQINFGFKTNEDRFFKEEKKTVPN 202
           SQ  +G K       ++   T  N
Sbjct: 174 SQ-TYGIKRPLFSLMQQIANTPKN 196


>gi|206976138|ref|ZP_03237047.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           H3081.97]
 gi|217961012|ref|YP_002339580.1| DNA polymerase III subunit epsilon [Bacillus cereus AH187]
 gi|222097065|ref|YP_002531122.1| DNA polymerase iii subunit epsilon [Bacillus cereus Q1]
 gi|229140223|ref|ZP_04268781.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
 gi|206745592|gb|EDZ56990.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           H3081.97]
 gi|217066526|gb|ACJ80776.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH187]
 gi|221241123|gb|ACM13833.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
 gi|228643309|gb|EEK99582.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
          Length = 315

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|254469279|ref|ZP_05082684.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Pseudovibrio sp. JE062]
 gi|211961114|gb|EEA96309.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Pseudovibrio sp. JE062]
          Length = 471

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 7/172 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64
            +  +VFD ETTGL    D I++IGAV +++       T    + P GR     +  +H 
Sbjct: 276 DLSFVVFDTETTGLMPNKDEIVQIGAVRVVNRRIIPGETVDQLVNP-GRPIPAASTGVHR 334

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD+ + + P   +  S+F  F   ++A  +AHNA FD+ F+             P  I+
Sbjct: 335 ITDDMVVNAPDPVTATSDFHVF--AKDAVIVAHNAPFDMAFLQRYGHMSGHVWDHP--IL 390

Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+ ++     + + + L++LC R  I I    +H AL D+   +    K++
Sbjct: 391 DTVLLSAVVFGAEQEHTLDALCARLDIEIPEALRHTALGDAQATAQALCKLL 442


>gi|19746871|ref|NP_608007.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS8232]
 gi|24418360|sp|Q8NZB5|DPO3_STRP8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|19749113|gb|AAL98506.1| DNA polymerase III alpha chain [Streptococcus pyogenes MGAS8232]
          Length = 1465

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L+      ++   F DF   +++  +AHNA FDVGF+NA  +R N  P    
Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHNL-PKITQ 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLRDARE 592


>gi|332522391|ref|ZP_08398643.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332313655|gb|EGJ26640.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 1466

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 421 MDLHEATYVVFDVETTGLSAINNDLIQIAASKMYKGNIIEQ-FDEFINP-GHPLSSFTTE 478

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  L    +   +   F  F   Q+A  +AHNA FDVGF+NA  +R +  PL   
Sbjct: 479 LTGITDNHLIGAKTLLQVLEAFQAFC--QDAILVAHNASFDVGFMNANYERHHL-PLIKQ 535

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     + 
Sbjct: 536 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLL 584


>gi|290579638|ref|YP_003484030.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025]
 gi|254996537|dbj|BAH87138.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025]
          Length = 1470

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N+   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S     
Sbjct: 423 MDMNEATYVVFDVETTGLSAINNDLIQIAASKMHKGNIVEQ-FDEFIDP-GHPLSQFTTD 480

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ +K       +  EF  F   Q+   +AHNA FDVGF+NA  +R +  P    
Sbjct: 481 LTGITDQHVKGAKPILQVLQEFQSFC--QDTVLVAHNATFDVGFMNANYERHDL-PKITQ 537

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     + 
Sbjct: 538 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLL 586


>gi|256424475|ref|YP_003125128.1| DNA polymerase III subunit epsilon [Chitinophaga pinensis DSM 2588]
 gi|256039383|gb|ACU62927.1| DNA polymerase III, epsilon subunit [Chitinophaga pinensis DSM
           2588]
          Length = 456

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 11/188 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG  +  + I EI A+ + D     + ++  + P G         L GITDE
Sbjct: 2   YAIVDIETTGGHASANGITEI-AIYIYDGRNIVQQYETLINP-GVPIPRYIQSLTGITDE 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P+F  +  + +   +++   ++AHN  FD  FI   L +        ++ + T+ 
Sbjct: 60  MVANAPAFDEVAGDIFALLHDK--IFVAHNVNFDYSFIQYHLAQAGYQL--RTKKLCTVR 115

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG--GSQINFGF 185
           + R+  P      L +LCK   I+++ R  H A  D+     ++  ++    G  I    
Sbjct: 116 LGRKIIPGLPSYSLGNLCKSLEISVTQR--HRAAGDAAATVKLFGLLLQQDTGKAIAHAL 173

Query: 186 KTNEDRFF 193
            T+    F
Sbjct: 174 STHSKEQF 181


>gi|312887472|ref|ZP_07747071.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM
           18603]
 gi|311300112|gb|EFQ77182.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM
           18603]
          Length = 456

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG  +    I EI  +    ++ TNR F+  + P G         L GI ++
Sbjct: 2   YAIVDIETTGGHASAHGITEIAIIIHDGHTITNR-FETLINP-GMLIPMHIQVLTGIDND 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+ P FSSI    ++    +   ++AHN  FD  F+   L     D   P   + T+ 
Sbjct: 60  MVKNAPPFSSIAQHVYEIL--EPCTFVAHNVNFDYSFVKHHLMASGYDLQSP--KLCTVR 115

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           + R+  P      L   C   GI  S  ++H A+ D+   + ++  M++   +
Sbjct: 116 LGRKIFPGLPSYSLGKFCGHMGIDNS--ARHRAMGDADATAKLFSMMLLNDKE 166


>gi|228986699|ref|ZP_04146829.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773030|gb|EEM21466.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 315

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|229818165|ref|ZP_04448447.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM
           20098]
 gi|229784416|gb|EEP20530.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM
           20098]
          Length = 186

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG+    DRIIEIGAV  +++      +   + P GR        L GI+DE
Sbjct: 19  YVVVDLETTGISPARDRIIEIGAVR-VEHGTVTAEYSKLVNP-GRPVGGFITGLTGISDE 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +     ++  +F       +   +AHNA FD+ F+     R    P      IDTL 
Sbjct: 77  MVGNASPIEAVLPDFLAHLRPSDT-IVAHNANFDINFLYDNCMRTLGKPFSYD-FIDTLR 134

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++R   P  R + L  L +R+GI  +   +H  L D+    + Y +M
Sbjct: 135 LSRALFPQERQHRLVDLIQRFGI--ADEEEHRGLSDALQTVECYERM 179


>gi|309799630|ref|ZP_07693854.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302]
 gi|308116752|gb|EFO54204.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302]
          Length = 681

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 8/169 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +VFD+ETTGL +  + +I++ A ++   +     F  F+ P G   S    +L 
Sbjct: 421 LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNIIAE-FDEFINP-GHHLSAFTTELT 478

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD+ +K+      +  EF +F   ++   +AHNA FDVGF+NA  +R    P     +
Sbjct: 479 GITDDHVKNAKPLVQVLKEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKITQPV 535

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 536 IDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 582


>gi|21702589|gb|AAM75986.1|AF481102_22 DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps]
          Length = 203

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 5/181 (2%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + R +V D ETTGL  +  R+ E+G VE+     T   F  ++ P  R  +  A  +H +
Sbjct: 2   QTRYVVLDTETTGLSPRYHRLAEVGCVEIACGRITGNFFHSYINPRQR-MTRGAQAVHRL 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123
            DEFL ++P+F +I      F     +  + HN  FD+ F++A L      P        
Sbjct: 61  RDEFLAEQPTFRAIAQRLLFFL--CRSTLVGHNLSFDLNFLDAGLATAGFMPAARYCHGV 118

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IDT+    ++    R  L++ C R G+    R++HGAL D+ LL++ ++        I +
Sbjct: 119 IDTMLHLAQRGRRRRFSLDACCDRLGVRRGDRARHGALEDAVLLAEAFVVAKRTLPPIGY 178

Query: 184 G 184
            
Sbjct: 179 H 179


>gi|71904322|ref|YP_281125.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS6180]
 gi|123747742|sp|Q48R90|DPO3_STRPM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|71803417|gb|AAX72770.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS6180]
          Length = 1465

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 8/180 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L+D     ++   F DF   +++  +AHNA FDVGF+NA  +R +  P    
Sbjct: 478 LTGITDKHLQDAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLRDARE 592


>gi|227432323|ref|ZP_03914316.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351929|gb|EEJ42162.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 1437

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 8/173 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL +  DRIIE+ AV+ +        F  ++ P G   S    KL  ITD 
Sbjct: 419 FVAFDLETTGLSAVTDRIIELSAVK-MQLGNVIEKFSEYINP-GFLLSEFTTKLTSITDA 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +  +  +I   F ++    NA  + HN  FDVGF+NA   R N+ P+  + IIDTL 
Sbjct: 477 MVANSDTEENIIKRFREW--SGNAVLVGHNVTFDVGFMNAAYTRYNQ-PIITNAIIDTLP 533

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             R  +P  +   L ++ KR+ I +     H A+ D+     +  +++    +
Sbjct: 534 FTRWLYPDYKSYRLGTIAKRFNINLE--QAHRAIFDAETTGHIAWRLIKEAQE 584


>gi|183983226|ref|YP_001851517.1| hypothetical protein MMAR_3235 [Mycobacterium marinum M]
 gi|183176552|gb|ACC41662.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 674

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 23/219 (10%)

Query: 4   KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
             +   +V D+ETTG  +        D I EIGAV++         F   + P  R   P
Sbjct: 52  LRETTFVVVDLETTGGRATGTEASPPDAITEIGAVKVRGGVILGE-FATLVDPQ-RSIPP 109

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           + ++L GIT   L D P+  S+   F++F    N+  +AHNA FD+GF+ A   R +   
Sbjct: 110 QIVRLTGITTAMLCDAPTIDSVLPMFFEFVG--NSVLVAHNAGFDIGFLRAAAGRCDIAW 167

Query: 118 LDPSRIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              S+++ T+ +ARR   +  +    L +L + +  +++ +  H AL D+    +V   +
Sbjct: 168 -PGSKVLCTVRLARRVLSREEAPSVRLAALARLF--SVATQPTHRALDDARATVEVLHAL 224

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
           +      N G  +     + E +  +P ++  +R K + 
Sbjct: 225 IERVG--NQGVHS-----YAELRAYLPGVTPAQRRKRVL 256


>gi|294140713|ref|YP_003556691.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12]
 gi|293327182|dbj|BAJ01913.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12]
          Length = 206

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 82/177 (46%), Gaps = 9/177 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M        I+ D ETTGL   + DR IEIGAV + D      TFQ  + P G + S   
Sbjct: 1   MSSLAANSVIILDFETTGLSPNQGDRAIEIGAVRIQDG-IVVDTFQELMNP-GFRVSGFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GI++  L +      + + F DF  + N   +AHNA FD  F++AEL  IN     
Sbjct: 59  EGYTGISNAMLANAAPCEEVMARFADFIGDHN--LVAHNASFDQRFLDAELDGINLSY-- 114

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +   ++ IARR +     + L  L +   I       H AL DS + + ++++M+
Sbjct: 115 GGKFACSMLIARRLYQDAPNHKLGGLVEYKQIENDG-VFHRALADSEMTAKLWLQML 170


>gi|254522385|ref|ZP_05134440.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
 gi|219719976|gb|EED38501.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
          Length = 169

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/166 (40%), Positives = 93/166 (56%), Gaps = 7/166 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D ETTG+  +   R+IEIGAVEL+D   T R F  +L P  RK    A ++HGI+
Sbjct: 3   RIVALDTETTGISHRLGHRVIEIGAVELIDGQLTGRQFHTYLQPQ-RKVDRGAQRVHGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDPSRII 124
           D  L  KP FSS  +E   F   + +E +AHNA FDVGF++ EL+            RI 
Sbjct: 62  DAMLVGKPLFSSKAAELLAFL--RGSEMVAHNATFDVGFLDNELRLSGIPGTLAQHCRIT 119

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            +L +AR + P   N L+ + +R  I   +R  HGAL D+HLL+ V
Sbjct: 120 CSLKLARGRWPGQGNKLDDVLQRLRIP-GNRGLHGALKDAHLLAQV 164


>gi|229031267|ref|ZP_04187273.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271]
 gi|228730025|gb|EEL80999.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271]
          Length = 315

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|30021712|ref|NP_833343.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 14579]
 gi|29897267|gb|AAP10544.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
          Length = 315

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++    +  + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHATNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|329940730|ref|ZP_08290010.1| exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329300024|gb|EGG43922.1| exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 336

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 85/202 (42%), Gaps = 11/202 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L    +    +   + P      P  + +HG+T E
Sbjct: 22  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTTVNPER---DPGPVWIHGLTSE 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  +  EF      +    +AHNA FD   I  E  R  ++P    R + T++
Sbjct: 78  ALEGAPLFHEVAGEFAARLTGR--VLVAHNAVFDWSMIAREYARAGQEPPVRQR-LCTIA 134

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +++    P   + L +L   +G+    R  H AL D+ +L++ +   +   ++ N     
Sbjct: 135 LSKALALPLPNHKLETLAAHFGVV--QRRAHHALDDARVLAEAFRPSLHAAARDNVRLPL 192

Query: 188 NEDRFFKEEKKTVPNISLLKRD 209
            E     E   T P I      
Sbjct: 193 LECLPLTEWSAT-PRIGRQATP 213


>gi|322374172|ref|ZP_08048705.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C150]
 gi|321276877|gb|EFX53949.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C150]
          Length = 1464

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   +   +VFD+ETTGL + ++ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 419 LELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIIEQ-FDEFIDP-GYPLSAFTTE 476

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +K       +  EF  F   Q    +AHNA FDVGF+NA  +R N+ P    
Sbjct: 477 LTGITDNHVKGAKPLLQVLQEFQVFC--QGTVLVAHNATFDVGFMNANYER-NQLPTISQ 533

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+G+ + H   H A  D+     + 
Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALDHH--HMANYDAEATGRLL 582


>gi|332312340|gb|EGJ25435.1| ATP-dependent helicase [Listeria monocytogenes str. Scott A]
          Length = 931

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 9/171 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M +  + R IV D+ETTG  + + DRII+  A   ++  K   T+  FL P  +      
Sbjct: 1   MEQMKQKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L GI+ + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L 
Sbjct: 59  QELTGISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LG 115

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             + +DT+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 116 KMKKLDTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 164


>gi|324327507|gb|ADY22767.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 315

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|257439598|ref|ZP_05615353.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
           A2-165]
 gi|257197965|gb|EEU96249.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
           A2-165]
          Length = 1417

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 18/222 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD ETTGLD   + + EIGAV + +  +    F  F+ P G+  +P+  +L GIT+E
Sbjct: 397 FCVFDTETTGLDPGVEYLTEIGAVIVRNG-EVVEEFDTFVKP-GKPITPKITELTGITNE 454

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
            + D P        F  F        +AHNA  FD+ F+ A  +R           IDTL
Sbjct: 455 MVADAPGEKEALEAFLRF--ADGRILVAHNAHAFDIRFLKAAAKRSGISFEPT--YIDTL 510

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ------ 180
           ++A+  +P   N    ++ K   + +     H A  DS  L  ++  M+   ++      
Sbjct: 511 TMAQAMYPGLHNYKQGTINKH--LELPSYEAHRACEDSAALGRIFCVMLSDLAEKEVTTV 568

Query: 181 --INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
             IN G   N +   K+    +  +      K L+  +++  
Sbjct: 569 EGINTGLGGNREVLKKKYFHLIILVKNQMGLKNLYKIVSEAH 610


>gi|194291379|ref|YP_002007286.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular
           protein) [Cupriavidus taiwanensis LMG 19424]
 gi|193225283|emb|CAQ71225.1| DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (modular
           protein) [Cupriavidus taiwanensis LMG 19424]
          Length = 532

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG D++ DRI EIG VE+         ++  L P G    P   ++ GI+D+
Sbjct: 33  IVFVDLETTGADAQRDRITEIGVVEVGPDGIV--EWETLLDP-GMSIPPFIQRMTGISDD 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ +P+F S+     +    Q   ++AHNA+FD GF+    +R        + ++ T+ 
Sbjct: 90  MVRGQPTFESLAESLAERL--QGRLFVAHNARFDYGFLKNAFRRAGVTF--RADVLCTVR 145

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++R   PS  R+ L++L  R+G+T   R  H AL D+ LL   + K+
Sbjct: 146 LSRSLFPSVERHGLDALIARFGLTPKGR--HRALADAELLWQFWQKI 190


>gi|225867817|ref|YP_002743765.1| DNA polymerase III PolC-type [Streptococcus equi subsp.
           zooepidemicus]
 gi|197941223|gb|ACH78331.1| DNA polymerase [Streptococcus equi subsp. zooepidemicus]
 gi|225701093|emb|CAW97928.1| DNA polymerase III PolC-type [Streptococcus equi subsp.
           zooepidemicus]
          Length = 1465

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIIEQ-FDEFINP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  L        +   F  F   Q    +AHNA FDVGF+NA   R     +   
Sbjct: 478 LTGITDNHLVGAKPIQQVLEAFQAFC--QGTILVAHNASFDVGFMNANYDRYGLAKIS-Q 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL +AR  +P   R+ L  L KR+ +++ H   H A  D+     + 
Sbjct: 535 PVIDTLELARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLL 583


>gi|209809036|ref|YP_002264574.1| exonuclease [Aliivibrio salmonicida LFI1238]
 gi|208010598|emb|CAQ80976.1| exonuclease [Aliivibrio salmonicida LFI1238]
          Length = 227

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 10/192 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   + DR IEIGAV+L +    +R FQ  + P G + S       GIT+ 
Sbjct: 31  VVLDFETTGLSPNQGDRAIEIGAVKLENGVIVDR-FQKLMNP-GFRVSSFIANYTGITNA 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L      +++  EF DF   Q    +AHNA FD  F++AEL  I +D         +L 
Sbjct: 89  MLMGADDCATVMHEFADFI--QGCNLVAHNASFDQRFLDAELDAIQRD--YDGTFACSLL 144

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++RR    +  + L  L   + I       H AL D+ + + ++  ++    + ++  K+
Sbjct: 145 VSRRLTQEAPSHKLGELVAYHQIDNDG-VFHRALADAEVTASLWQVLL-DTLESDYAIKS 202

Query: 188 NEDRFFKEEKKT 199
            +    ++  KT
Sbjct: 203 PDFSLMQKIAKT 214


>gi|89072880|ref|ZP_01159437.1| putative DNA polymerase III [Photobacterium sp. SKA34]
 gi|89051402|gb|EAR56857.1| putative DNA polymerase III [Photobacterium sp. SKA34]
          Length = 207

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 9/169 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   + DR IEIGAV+L++    ++ FQ  + P G + S       GI++ 
Sbjct: 11  VVLDFETTGLSPNQGDRAIEIGAVKLVNGEIVDQ-FQQLMNP-GFRVSSFIEGYTGISNN 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P    +   F DF    +A  +AHNA FD  F++AEL  I +          ++ 
Sbjct: 69  MLRTAPPCHEVMDAFADFIG--DANLVAHNASFDQRFLDAELADIGR--YYTGTFTCSML 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           IARR +     + L +L     I   +   H AL DS + + +++ M+ 
Sbjct: 125 IARRLYQHAPNHKLGTLVDFKHIK-HNGVFHRALADSEMTARLWLVMLE 172


>gi|310642523|ref|YP_003947281.1| dnaq family exonuclease/ding family helicase [Paenibacillus
           polymyxa SC2]
 gi|309247473|gb|ADO57040.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
           polymyxa SC2]
          Length = 960

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 98/237 (41%), Gaps = 10/237 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  V D ETTG  S +D II++G   +   +  +R +  ++ P GR   P    L GIT
Sbjct: 1   MKFAVLDFETTGTQSADD-IIQVGLAIIDHDNSISRVYGSYVNP-GRSIPPFITGLTGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +KD P+   +  E     +  +   + HN  FD  F+ + L R    P    RI+DT
Sbjct: 59  DDDVKDAPALEEMMMELVPMLD--DVVLVGHNVAFDFNFLQSALDRCGYLPFS-GRILDT 115

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +   +   PS S   L  +   +G  ++H   H A  D+   ++V++K +     +    
Sbjct: 116 MDFLKIMFPSLSSYQLGFVSSEFG--LAHDRPHQADSDALATAEVFLKCLGELQALPLIT 173

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242
                  F EE   +       R++     I   E  +  + +    ++  W    +
Sbjct: 174 IQRLSDLFAEEDSDLGWFLDGIREEKELDPIQDLEKHQFFRQLALKVED--WTELAT 228


>gi|195978859|ref|YP_002124103.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975564|gb|ACG63090.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 1465

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIIEQ-FDEFINP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  L        +   F  F   Q    +AHNA FDVGF+NA   R     +   
Sbjct: 478 LTGITDNHLVGAKPIQQVLEAFQAFC--QGTILVAHNASFDVGFMNANYDRYGLAKIS-Q 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL +AR  +P   R+ L  L KR+ +++ H   H A  D+     + 
Sbjct: 535 PVIDTLELARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLL 583


>gi|318057718|ref|ZP_07976441.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318079748|ref|ZP_07987080.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
 gi|333028027|ref|ZP_08456091.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
 gi|332747879|gb|EGJ78320.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
          Length = 331

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 10/200 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+      +    +    +   + P      P  + +HG+T E
Sbjct: 19  YAVVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTLVNPER---DPGPVWIHGLTSE 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  E     + +    +AHNA FD   +  E  R         R + T++
Sbjct: 75  VLEGAPLFPEIAEELSRRLDGR--VLVAHNAVFDWSMLAREYARAGI-TAPVRRRLCTIA 131

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+    P   + L +L   +G+    R  H AL D+ +L++ +   +   +        
Sbjct: 132 LAKELALPLPNHKLETLAAHFGVE--QRRAHHALDDARVLAEAFRPSLRAAALGGVRLPL 189

Query: 188 NEDRFFKEEKKTVPNISLLK 207
            E R   E   +    ++ +
Sbjct: 190 LECRPLTEWSDSPARPTIGR 209


>gi|228928662|ref|ZP_04091698.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229123127|ref|ZP_04252334.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
 gi|228660421|gb|EEL16054.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
 gi|228830981|gb|EEM76582.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 315

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|228992309|ref|ZP_04152240.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM
           12442]
 gi|228767334|gb|EEM15966.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM
           12442]
          Length = 315

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  NDRII++ AV   ++   ++ F  F+ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDRIIQVAAVRYRNHELADQ-FVSFVNPE-RFIPNRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F  E     +AHNA FD+ F+ +  + + + P   + +IDT+ 
Sbjct: 68  RVSDAPTIQEVLPLFLAFLGED--TIVAHNASFDMRFLKSNAKML-RLPEPKNIVIDTVF 124

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A+R    +R + L +L +  GI +S    H AL D    + VY K
Sbjct: 125 LAKRYMKHARNHKLETLKRMLGIRLS---SHNALDDCITCAAVYQK 167


>gi|126737494|ref|ZP_01753224.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. SK209-2-6]
 gi|126720887|gb|EBA17591.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. SK209-2-6]
          Length = 465

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 88/179 (49%), Gaps = 10/179 (5%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSP 57
           +R   +R     VFD ETTGL    D I++IGA+ +++        F+  + P G     
Sbjct: 248 LRTRPLRSLSFTVFDTETTGLLPHKDEIVQIGALRVVNGRLVNGEGFETLVNP-GFDIPA 306

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            +  +HG+T E +++ P   +  + F  F   +++  +AHNA FD+ F+    +    D 
Sbjct: 307 ASTAVHGVTTEMVRNSPMIKTAGAAFHQFC--KDSVLVAHNAPFDIAFLRRHAKSSGVDW 364

Query: 118 LDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                ++DT+ ++     +S  + L++LC R  I I    +H A+ D+   ++  ++M+
Sbjct: 365 --NHMVLDTVLLSAVIFGASVPHTLDALCDRLEINIPEALRHTAMGDAQATAEALLRML 421


>gi|302550499|ref|ZP_07302841.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
 gi|302468117|gb|EFL31210.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
          Length = 330

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 12/198 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L    +    +   + P      P  + +HG+T E
Sbjct: 23  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTMVNPER---DPGPVWIHGLTSE 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  EF      +    +AHNA FD   I  E  R  ++ +   + + T++
Sbjct: 79  ALEGAPLFQDIAEEFTTRL--EGRVLVAHNAVFDWQMIAREYARAQRE-VPVRQRLCTIA 135

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +++    P   + L SL   YG+    R  H AL D+ +L++ +   +   +        
Sbjct: 136 LSKELGLPLPNHKLESLAAHYGVV--QRRAHHALDDARVLAEAFQPSLRAAAAGGVRLPL 193

Query: 188 NEDRFFKE--EKKTVPNI 203
            E R   E  ++   P I
Sbjct: 194 LECRPLTEWSDRPATPRI 211


>gi|260205487|ref|ZP_05772978.1| hypothetical protein MtubK8_14429 [Mycobacterium tuberculosis K85]
 gi|289574877|ref|ZP_06455104.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289539308|gb|EFD43886.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
          Length = 645

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 101/223 (45%), Gaps = 23/223 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           +  ++   +V D+ETTG  +        D I EIGAV++   +     F   + P     
Sbjct: 36  MSLSETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSI 93

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+ ++L GIT   + + P+  ++   F++F    ++  +AHNA FD+GF+ A  +R + 
Sbjct: 94  PPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDI 151

Query: 116 DPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               P +++ T+ +ARR           L +L + + +  +    H AL D+    DV  
Sbjct: 152 TWPQP-QVLCTMRLARRVLSRDEAPSVRLAALARLFAV--ASNPTHRALDDARATVDVLH 208

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            ++      N G  T     + E +  +PN++  +R K +   
Sbjct: 209 ALIERVG--NQGVHT-----YAELRSYLPNVTQAQRCKRVLAE 244


>gi|255532547|ref|YP_003092919.1| DNA polymerase III subunit epsilon [Pedobacter heparinus DSM 2366]
 gi|255345531|gb|ACU04857.1| DNA polymerase III, epsilon subunit [Pedobacter heparinus DSM 2366]
          Length = 456

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 9/164 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V DIETTG  +  + I EI  +   D  +    ++  + P G++       L GI+
Sbjct: 1   MLYAVVDIETTGGFASGNGITEISILVH-DGREVVEAYETLINP-GQEIPAYIETLTGIS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E +   P F  + +E +   +++   ++AHN  FD  FI   L     D     + + T
Sbjct: 59  NEMVVTAPLFGGVAAEIYAMLHDK--IFVAHNVNFDFSFIKHHLSLSGYDL--RCKKLCT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R+  P  S   L  LC    I I  R  H A  D+   ++
Sbjct: 115 VRLSRKLFPGYSSYSLGKLCNALNIAIHDR--HRAGGDARATAE 156


>gi|293189820|ref|ZP_06608534.1| putative DNA polymerase III, epsilon subunit [Actinomyces
           odontolyticus F0309]
 gi|292821235|gb|EFF80180.1| putative DNA polymerase III, epsilon subunit [Actinomyces
           odontolyticus F0309]
          Length = 540

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 12/209 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGL +    I EIGAV + D +  +  F   + P+ R   P    L GIT  
Sbjct: 19  WVVVDLETTGLGA-GAEITEIGAVRIRDGAVVDE-FSSLVKPS-RPIPPFITSLTGITPA 75

Query: 69  FLKDKPSFSSIFSEFWDF--FNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            + D    +S+   F ++      ++   +AHNA FDVGF+    +     P    R++D
Sbjct: 76  MVADADPIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARAC-ARPWPRVRVVD 134

Query: 126 TLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           TL++AR   P      + L ++   +G   +   +H AL D+   +++ +  +   +   
Sbjct: 135 TLALARLALPRPLVRNHKLGTVASYFG--TATVPEHRALGDARATAEILLGFIDLLAAAG 192

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                +      +     P+      D P
Sbjct: 193 ATDVEDLIVLTDQAPARRPSTPDFVTDLP 221


>gi|71907536|ref|YP_285123.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71847157|gb|AAZ46653.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 453

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 10/170 (5%)

Query: 7   MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR + F D+ETTG  + +DRI EIG VE +D   + R +Q  + P G +  P   +L GI
Sbjct: 1   MRPLAFVDLETTGATATHDRITEIGIVE-VDADGSVREWQQLVNP-GMRIPPFIEQLTGI 58

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +DE + D P F +I  E       +   +IAHNA+FD GF+  E +R+       + ++ 
Sbjct: 59  SDEMVADAPPFEAIAGEVMKRL--EGRLFIAHNARFDYGFLKNEFKRLGVTF--RAAVLC 114

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           T+ ++R   P   R++L+SL +R+   +   ++H AL D+ L+   + K+
Sbjct: 115 TVKLSRTLFPEHKRHNLDSLIERH--ELRAEARHRALADAQLIHQFWQKI 162


>gi|317125104|ref|YP_004099216.1| DNA polymerase III subunit epsilon [Intrasporangium calvum DSM
           43043]
 gi|315589192|gb|ADU48489.1| DNA polymerase III, epsilon subunit [Intrasporangium calvum DSM
           43043]
          Length = 590

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 86/212 (40%), Gaps = 17/212 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            R   +  +V D+E+TG       I EIGAV++         FQ  + P           
Sbjct: 13  TRLADVTFVVVDLESTGGSPAQCGITEIGAVKVRGGDVIGE-FQTLVNP-AEPIPAFISV 70

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  + D P   S F  F +F     +  +AHNA FD+ F+ A   R    P    
Sbjct: 71  LTGITDAMVADSPRIESAFPAFLEF--AAGSVLVAHNAGFDISFLKAAAVRTG-TPWPGF 127

Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            ++DTL++AR+         + L+SL + +    +    H AL D+    DV   ++   
Sbjct: 128 DVLDTLTLARQLVTRDEVPNHKLSSLARVFASPTT--PDHRALHDARATVDVLHGLIERV 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
              N G  T E     E       +S  +R K
Sbjct: 186 G--NLGVHTLE-----ELASYTSRVSPAQRRK 210


>gi|295703510|ref|YP_003596585.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium
           DSM 319]
 gi|294801169|gb|ADF38235.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           megaterium DSM 319]
          Length = 933

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D+ETTG   K  D++I+  AV + D     R F  FL P G    P   +L  I 
Sbjct: 4   RFVVVDLETTGHSPKQGDKMIQFAAVIVEDGKIVER-FSSFLNP-GMDIPPFITQLTNIQ 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ +K  P F  I  +  +  +  +A ++AHN  FD+ F+  EL +  ++ L  +  +DT
Sbjct: 62  NDMVKGAPLFEEISPKIIELLD--DAYFVAHNVAFDLTFLQEELYQCGRETL-YNSTVDT 118

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +AR   P+     L+ L +   I   H + H A  D+ + + +
Sbjct: 119 VELARILLPTVDGYKLSQLAEYLHIE--HENPHQADSDAEVTARI 161


>gi|16801079|ref|NP_471347.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria innocua Clip11262]
 gi|16414514|emb|CAC97243.1| dinG [Listeria innocua Clip11262]
          Length = 928

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K R IV D+ETTG  + + DRII+  A   ++  K   T+  FL P  +       +L G
Sbjct: 3   KKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYSTFLNPE-KPIPAFIQELTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + +K+ P F  +          ++  ++AHN  FD  F+  E+ R     L   + +
Sbjct: 61  ISPKDVKNAPLFEDVAPIIASLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           DT+ +AR  +P      L  L   +G  + H   H A  D+ + +D
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 161


>gi|259503120|ref|ZP_05746022.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041]
 gi|259168986|gb|EEW53481.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041]
          Length = 1444

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 14/204 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD+ETTGL +  D++IE+ AV++ +     R F  F+ P G   S +   L  ITDE
Sbjct: 423 YVIFDVETTGLSAIYDKVIELSAVKMKNGEVLAR-FDEFIDP-GFPLSEQTTNLTSITDE 480

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   S   +F  F DF          HN  FD+GF+N   +R   + +    +IDTL 
Sbjct: 481 MVRGSKSEEEVFKMFKDFCA--GTIIAGHNVSFDMGFMNTGYRRHQMEEI-TEPVIDTLP 537

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR  +P+ R   LN+L K++ + + H   H A  D+     +  K +          K 
Sbjct: 538 LARFLYPNMRGYRLNTLSKKFKVALEHH--HRANFDAEATGHLLYKFLKDAE------KR 589

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
            E R+  E  + +      K  +P
Sbjct: 590 YEIRYVDELNQHMAENDAYKHARP 613


>gi|313623167|gb|EFR93428.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           innocua FSL J1-023]
          Length = 928

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K R IV D+ETTG  + + DRII+  A   ++  K   T+  FL P  +       +L G
Sbjct: 3   KKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYSTFLNPE-KPIPAFIQELTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + +K+ P F  +          ++  ++AHN  FD  F+  E+ R     L   + +
Sbjct: 61  ISPKDVKNAPLFEDVAPIIASLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           DT+ +AR  +P      L  L   +G  + H   H A  D+ + +D
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 161


>gi|154509184|ref|ZP_02044826.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798818|gb|EDN81238.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC
           17982]
          Length = 550

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 12/209 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGL +  D I EIGAV + D +  +  F   + P+ R   P    L GIT  
Sbjct: 29  WVVVDLETTGLGAGAD-ITEIGAVRIRDGAVVDE-FSSLVKPS-RPIPPFITSLTGITPA 85

Query: 69  FLKDKPSFSSIFSEFWDF--FNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            + D    +S+   F ++      ++   +AHNA FDVGF+    +     P    RI+D
Sbjct: 86  MVADAAPIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARAC-ARPWPRVRIVD 144

Query: 126 TLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           TL++AR   P      + L ++   +G   +   +H AL D+   +++ +  +   +   
Sbjct: 145 TLALARLALPRPLVRNHKLGTVASYFG--TATVPEHRALGDARATAEILLGFIDLLAAAG 202

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                +      +     P+      D P
Sbjct: 203 ATDVEDLIVLTDQAPARRPSTPDFVTDLP 231


>gi|225871273|ref|YP_002747220.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047]
 gi|225700677|emb|CAW95265.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047]
          Length = 1465

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIIEQ-FDEFINP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  L        +   F  F   Q    +AHNA FDVGF+NA   R     +   
Sbjct: 478 LTGITDNHLVGAKPIQQVLEAFQAFC--QGTILVAHNASFDVGFMNANYDRYGLAKIS-Q 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL +AR  +P   R+ L  L KR+ +++ H   H A  D+     + 
Sbjct: 535 PVIDTLELARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLL 583


>gi|257068588|ref|YP_003154843.1| hypothetical protein Bfae_14220 [Brachybacterium faecium DSM 4810]
 gi|256559406|gb|ACU85253.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Brachybacterium faecium DSM 4810]
          Length = 551

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 13/202 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG D   D I EIGAV++         F+ F+ P  R        L GITD  
Sbjct: 22  VVVDLETTGTDPAADAITEIGAVKVRGGEVLGE-FRTFVDPE-RPIPAYIASLTGITDAA 79

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + PS  ++   F DF    +A  +AHNA+FD+GF++A+          P R++DTL++
Sbjct: 80  VAEAPSIRTVLPMFLDFAG--DAALVAHNARFDIGFLSAQAAACEITWPRP-RVLDTLAL 136

Query: 130 ARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           AR          + L++L +  G  I+    H AL D+    DV   ++        G  
Sbjct: 137 ARTVFRRDEVRDHRLSTLARHVGAGIT--PDHRALSDARATVDVLHAIIERLGPS--GAS 192

Query: 187 TNEDRFFKEEKKTVPNISLLKR 208
           T ED      ++  P     K 
Sbjct: 193 TLED-LGTAHRRASPVQLRKKH 213


>gi|196034235|ref|ZP_03101645.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
 gi|228947225|ref|ZP_04109519.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|195993309|gb|EDX57267.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
 gi|228812472|gb|EEM58799.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 315

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|254232344|ref|ZP_04925671.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|289750785|ref|ZP_06510163.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|124601403|gb|EAY60413.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|289691372|gb|EFD58801.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|323719091|gb|EGB28236.1| hypothetical protein TMMG_01471 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 647

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 23/223 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           +   +   +V D+ETTG  +        D I EIGAV++   +     F   + P     
Sbjct: 38  MSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSI 95

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+ ++L GIT   + + P+  ++   F++F    ++  +AHNA FD+GF+ A  +R + 
Sbjct: 96  PPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDI 153

Query: 116 DPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               P +++ T+ +ARR           L +L + + +  +    H AL D+    DV  
Sbjct: 154 TWPQP-QVLCTMRLARRVLSRDEAPSVRLAALARLFAV--ASNPTHRALDDARATVDVLH 210

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            ++      N G  T     + E +  +PN++  +R K +   
Sbjct: 211 ALIERVG--NQGVHT-----YAELRSYLPNVTQAQRCKRVLAE 246


>gi|281202348|gb|EFA76553.1| DNA polymerase III [Polysphondylium pallidum PN500]
          Length = 725

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 5/169 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + FD+ET+G    +D IIEIGAVEL++  +T  TFQ +  P  +   P A ++H +++
Sbjct: 320 RVVCFDLETSGFGP-DDSIIEIGAVELINGCRTGLTFQSYAKPKTQ-IHPAAEQIHQLSN 377

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L+D P    + S F DF    ++  +AHN  FD   +  EL R         +   T+
Sbjct: 378 FLLQDAPPIEFVLSSFMDFVG--DSILVAHNLAFDRRMLIQELVRSKTPFDINHKCFCTM 435

Query: 128 SIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMM 175
              R+ +  S   L+S+ ++  I  +  R  HGAL+DS +L+ VY  ++
Sbjct: 436 RYFRKMYKDSNYSLDSISQQLKINKLLLRRTHGALVDSEILAIVYKHLL 484


>gi|56808719|ref|ZP_00366439.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus pyogenes M49 591]
 gi|209560099|ref|YP_002286571.1| DNA polymerase III PolC [Streptococcus pyogenes NZ131]
 gi|209541300|gb|ACI61876.1| DNA polymerase III alpha subunit [Streptococcus pyogenes NZ131]
          Length = 1465

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 8/180 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L+D     ++   F DF   +++  +AHNA FDVGF+NA  +R +  P    
Sbjct: 478 LTGITDKHLQDAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLKDARE 592


>gi|222099149|ref|YP_002533717.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM
           4359]
 gi|281411717|ref|YP_003345796.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila
           RKU-10]
 gi|221571539|gb|ACM22351.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM
           4359]
 gi|281372820|gb|ADA66382.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila
           RKU-10]
          Length = 186

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 9/176 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59
           +  N +   V D ETTG D    DRIIEI AV +      +NR F   + P+ R      
Sbjct: 1   MIWNDIIFCVVDTETTGTDPFGGDRIIEIAAVPVFKGKIFSNRAFHSLVNPHVR-IPALI 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGI++E +++ P   +++  F D+   +    + HNA FD+ F++   +     PL 
Sbjct: 60  QKVHGISNEEVEEAPDMGTVYERFRDYV--KGTVLVFHNANFDLTFLDMMAKETRNFPL- 116

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +  IDTL I++       + L  LC++ GI    + +H AL D+ + + V+++++
Sbjct: 117 TNAYIDTLDISQEVF-GRPHSLKWLCEKLGIR--DKIEHRALSDALVTAKVFVRLV 169


>gi|15639630|ref|NP_219080.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025868|ref|YP_001933640.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
           pallidum SS14]
 gi|6014996|sp|O83649|DPO3E_TREPA RecName: Full=DNA polymerase III subunit epsilon
 gi|3322942|gb|AAC65617.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018443|gb|ACD71061.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060013|gb|ADD72748.1| DNA polymerase III subunit epsilon [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 215

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 95/177 (53%), Gaps = 10/177 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
              FD ETTGL ++ DRIIEIGAV   D       F   + P+ R   P+  K++ ITD+
Sbjct: 15  FTAFDTETTGLKAEEDRIIEIGAVTF-DRKGIIARFSTLIFPD-RAIPPDVSKINHITDD 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +KP F  I S+F  F   +    +AHNA FDV F+NAEL    K PL   +++DT +
Sbjct: 73  MLVNKPRFCEIVSDFSRFI--KGTVLVAHNANFDVEFLNAELSLCKKQPLS-HKVVDTYA 129

Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +A+   P     +  L +L  ++G+T+   + H A  D+ +  +++  M+   ++ N
Sbjct: 130 MAQAVFPGLGRHQYRLQNLALQFGLTV--HAAHRAEDDARVCMELFTTMIAHHAKQN 184


>gi|313115651|ref|ZP_07801107.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622037|gb|EFQ05536.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 1417

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 95/222 (42%), Gaps = 18/222 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD ETTGLD   + + EIGAV + +  +    F  F+ P G+  +P+  +L GIT+E
Sbjct: 397 FCVFDTETTGLDPGVEYMTEIGAVIVKNG-EVVEEFDTFVKP-GKPITPKITELTGITNE 454

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
            + D P        F  F  ++    + HN   FD+ F+ A  +R           IDTL
Sbjct: 455 MVADAPGEKEALEAFLKFAGDR--ILVGHNVHAFDMRFLRAAAKRSGIKLEPT--YIDTL 510

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--------VGG 178
           ++A+  +P   N    ++ K   + +     H A  DS  L  ++  M+           
Sbjct: 511 TMAQAMYPGLHNYKQGTINKH--LELPAYEAHRACEDSAALGRIFGVMLNDLKEKQVAKV 568

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           S+IN G   N +   K+    +  +      K L+  +++  
Sbjct: 569 SEINTGLGGNREVLKKKYYHLIILVKNQMGLKNLYKIVSEAH 610


>gi|229162442|ref|ZP_04290403.1| DNA polymerase III alpha subunit [Bacillus cereus R309803]
 gi|228620921|gb|EEK77786.1| DNA polymerase III alpha subunit [Bacillus cereus R309803]
          Length = 315

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 19/208 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +       +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-LEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A++       + L +L +  GI +S    H A  D    + VY K              
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQKC----------ASI 171

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            E++  KE K  +    + +  K +  R
Sbjct: 172 EEEKTRKENKVVLDETVVYEAVKEILVR 199


>gi|94991249|ref|YP_599349.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10270]
 gi|166217452|sp|Q1JEV4|DPO3_STRPD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94544757|gb|ABF34805.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10270]
          Length = 1465

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 8/180 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L+D     ++   F DF   +++  +AHNA FDVGF+NA  +R +  P    
Sbjct: 478 LTGITDKHLQDAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLKDARE 592


>gi|125625168|ref|YP_001033651.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493976|emb|CAL98973.1| DNA polymerase III alpha subunit [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071977|gb|ADJ61377.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 1635

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 8/187 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +  +  F  F+ P G + S    +L GITD+
Sbjct: 593 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDD 650

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      + ++F  F   +    +AHNA FDVGF+N    R    P+    ++DTL 
Sbjct: 651 HVKNAKPLYEVLTKFQKFC--EGTILVAHNASFDVGFMNMNYSRNGL-PIISQPVVDTLE 707

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            AR  +P   R  L  L K++ I + H   H A  D+     +    +      N G+ +
Sbjct: 708 FARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDAEATGRLLFVFLEELRTRNTGWTS 765

Query: 188 NEDRFFK 194
             +   K
Sbjct: 766 LLELNAK 772


>gi|31793370|ref|NP_855863.1| hypothetical protein Mb2214 [Mycobacterium bovis AF2122/97]
 gi|121638072|ref|YP_978296.1| hypothetical protein BCG_2207 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224990566|ref|YP_002645253.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|31618962|emb|CAD97067.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493720|emb|CAL72195.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224773679|dbj|BAH26485.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 645

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 23/223 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           +   +   +V D+ETTG  +        D I EIGAV++   +     F   + P     
Sbjct: 36  MSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSI 93

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+ ++L GIT   + + P+  ++   F++F    ++  +AHNA FD+GF+ A  +R + 
Sbjct: 94  PPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDI 151

Query: 116 DPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               P +++ T+ +ARR           L +L + + +  +    H AL D+    DV  
Sbjct: 152 TWPQP-QVLCTMRLARRVLSRDEAPSVRLAALARLFAV--ASNPTHRALDDARATVDVLH 208

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            ++      N G  T     + E +  +PN++  +R K +   
Sbjct: 209 ALIERVG--NQGVHT-----YAELRSYLPNVTQAQRCKRVLAE 244


>gi|166032846|ref|ZP_02235675.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC
           27755]
 gi|166027203|gb|EDR45960.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC
           27755]
          Length = 232

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FDIETTGL  +++ IIEIGA+++ +    +R F  F+ P      P   +L GIT++
Sbjct: 5   YVAFDIETTGLSPEHNEIIEIGALKVREGKVVDR-FIRFIEPEAG-IPPMITQLTGITND 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++   +   +  EF +F        I HN +FD  F+  + + +          IDTL 
Sbjct: 63  MVEGAGNCGEVLPEFLEFCERD--TLIGHNVQFDFSFVKTKAKELGYTYDHMG--IDTLK 118

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           IA+  H       L +LC+ Y I     + H A  D+   + +Y  M
Sbjct: 119 IAKVVHADLPSRKLGALCEYYHIENV--AAHRAYHDALATAKLYQSM 163


>gi|111018139|ref|YP_701111.1| hypothetical protein RHA1_ro01126 [Rhodococcus jostii RHA1]
 gi|110817669|gb|ABG92953.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
          Length = 588

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 87/212 (41%), Gaps = 17/212 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
                   +V D+ETTG     D I EIGAV++             + P GR   P  ++
Sbjct: 17  TPLRDTTFVVVDLETTGARPGEDAITEIGAVKIRGGEVIAE-MATLVDP-GRSIPPHIVE 74

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           + GIT   + D P    +   F +F   + A  +AHNA FD GF+ A     +  P    
Sbjct: 75  ITGITTAMVIDAPRIERVLPAFLEF--ARGAVLVAHNAPFDTGFLKAAASATD-TPWPKF 131

Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            ++ T+ +ARR           L+SL + + +  +    H AL D+    DV   ++   
Sbjct: 132 TVLCTVKLARRVLSRDEAPSVKLSSLARLFDVGTT--PTHRALDDARATVDVLHALI--A 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
              N G  +       E    +P++S  +R K
Sbjct: 188 RVGNQGVHS-----LTELVDYLPDVSSHQRAK 214


>gi|218904738|ref|YP_002452572.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH820]
 gi|218538798|gb|ACK91196.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH820]
          Length = 315

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++         L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNYKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|15609328|ref|NP_216707.1| hypothetical protein Rv2191 [Mycobacterium tuberculosis H37Rv]
 gi|148662008|ref|YP_001283531.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra]
 gi|148823398|ref|YP_001288152.1| hypothetical protein TBFG_12219 [Mycobacterium tuberculosis F11]
 gi|167969416|ref|ZP_02551693.1| hypothetical protein MtubH3_15860 [Mycobacterium tuberculosis
           H37Ra]
 gi|215403581|ref|ZP_03415762.1| hypothetical protein Mtub0_07840 [Mycobacterium tuberculosis
           02_1987]
 gi|215411916|ref|ZP_03420690.1| hypothetical protein Mtub9_11341 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215427566|ref|ZP_03425485.1| hypothetical protein MtubT9_14751 [Mycobacterium tuberculosis T92]
 gi|215431125|ref|ZP_03429044.1| hypothetical protein MtubE_10707 [Mycobacterium tuberculosis
           EAS054]
 gi|215446420|ref|ZP_03433172.1| hypothetical protein MtubT_10948 [Mycobacterium tuberculosis T85]
 gi|219558170|ref|ZP_03537246.1| hypothetical protein MtubT1_13062 [Mycobacterium tuberculosis T17]
 gi|253798744|ref|YP_003031745.1| hypothetical protein TBMG_04035 [Mycobacterium tuberculosis KZN
           1435]
 gi|254551229|ref|ZP_05141676.1| hypothetical protein Mtube_12318 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187187|ref|ZP_05764661.1| hypothetical protein MtubCP_14313 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201308|ref|ZP_05768799.1| hypothetical protein MtubT4_14636 [Mycobacterium tuberculosis T46]
 gi|289443698|ref|ZP_06433442.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289447819|ref|ZP_06437563.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289554022|ref|ZP_06443232.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289570307|ref|ZP_06450534.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289745464|ref|ZP_06504842.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
           02_1987]
 gi|294993576|ref|ZP_06799267.1| hypothetical protein Mtub2_03474 [Mycobacterium tuberculosis 210]
 gi|297634780|ref|ZP_06952560.1| hypothetical protein MtubK4_11686 [Mycobacterium tuberculosis KZN
           4207]
 gi|297731771|ref|ZP_06960889.1| hypothetical protein MtubKR_11808 [Mycobacterium tuberculosis KZN
           R506]
 gi|298525683|ref|ZP_07013092.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|313659105|ref|ZP_07815985.1| hypothetical protein MtubKV_11818 [Mycobacterium tuberculosis KZN
           V2475]
 gi|1722908|sp|Q10384|Y2191_MYCTU RecName: Full=Uncharacterized protein Rv2191/MT2247
 gi|1237044|emb|CAA94260.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148506160|gb|ABQ73969.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra]
 gi|148721925|gb|ABR06550.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|253320247|gb|ACT24850.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289416617|gb|EFD13857.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289420777|gb|EFD17978.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289438654|gb|EFD21147.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289544061|gb|EFD47709.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289685992|gb|EFD53480.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
           02_1987]
 gi|298495477|gb|EFI30771.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|326903805|gb|EGE50738.1| DNA polymerase III [Mycobacterium tuberculosis W-148]
 gi|328458507|gb|AEB03930.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 645

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 23/223 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           +   +   +V D+ETTG  +        D I EIGAV++   +     F   + P     
Sbjct: 36  MSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSI 93

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+ ++L GIT   + + P+  ++   F++F    ++  +AHNA FD+GF+ A  +R + 
Sbjct: 94  PPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDI 151

Query: 116 DPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               P +++ T+ +ARR           L +L + + +  +    H AL D+    DV  
Sbjct: 152 TWPQP-QVLCTMRLARRVLSRDEAPSVRLAALARLFAV--ASNPTHRALDDARATVDVLH 208

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            ++      N G  T     + E +  +PN++  +R K +   
Sbjct: 209 ALIERVG--NQGVHT-----YAELRSYLPNVTQAQRCKRVLAE 244


>gi|156741527|ref|YP_001431656.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM
           13941]
 gi|156232855|gb|ABU57638.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM
           13941]
          Length = 944

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 89/212 (41%), Gaps = 14/212 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGL++  D IIEI AV+     +   TF   + P        + +L GIT E
Sbjct: 5   YVAIDVETTGLEAGVDEIIEIAAVKFR-TGEVIETFDTLVQP-RHSLPLNSSRLTGITAE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P FS +   F  F   +N   + HN +FD+  + A+  R+      P    DT  
Sbjct: 63  MLAGAPRFSEVAPRFAAFL--KNYPLVGHNVRFDINMLQAQGMRL------PQPAFDTFE 114

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A    P +    L++L +  GI   H   H AL D+ +   V++ ++     ++     
Sbjct: 115 LATLLMPRTPAYRLSALAETLGIV--HDEAHRALSDADVTRQVFLHLLRRIDALSLNDLN 172

Query: 188 NEDRFFKEEKKTV-PNISLLKRDKPLFTRITK 218
              R       T+ P     +R K L   + +
Sbjct: 173 EIVRLTSRVDWTLRPLFEAAQRAKALRVFVDE 204


>gi|86137282|ref|ZP_01055859.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. MED193]
 gi|85825617|gb|EAQ45815.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. MED193]
          Length = 484

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 7/182 (3%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
            N++   VFD ETTGL    D I++IGAV +L+            + P GR     + ++
Sbjct: 272 LNQLCFAVFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDP-GRPIPEASTRV 330

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG++   ++  P  +   +EF  F    +A  +AHNA FD+ F+    +        P  
Sbjct: 331 HGVSTAMVQGAPDIAEAAAEFHLF--ATDAVIVAHNAPFDMAFLRRHAKASGLAWDHP-- 386

Query: 123 IIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           I+DT+ ++     +S  + L++LC+R  ITI    +H AL D+   +   ++M+      
Sbjct: 387 ILDTVLLSAVLFGASVPHTLDALCERLDITIPPALRHTALGDAQATACALVQMIPMLQAR 446

Query: 182 NF 183
            F
Sbjct: 447 GF 448


>gi|116513078|ref|YP_811985.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris SK11]
 gi|116108732|gb|ABJ73872.1| DNA polymerase III catalytic subunit, PolC type [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 1635

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 8/187 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +  +  F  F+ P G + S    +L GITD+
Sbjct: 593 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDD 650

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      + ++F  F   +    +AHNA FDVGF+N    R    P+    ++DTL 
Sbjct: 651 HVKNAKPLYEVLTKFQKFC--EGTILVAHNASFDVGFMNMNYSRNGL-PIISQPVVDTLE 707

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            AR  +P   R  L  L K++ I + H   H A  D+     +    +      N G+ +
Sbjct: 708 FARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDAEATGRLLFVFLEELRTRNTGWTS 765

Query: 188 NEDRFFK 194
             +   K
Sbjct: 766 LLELNAK 772


>gi|309812650|ref|ZP_07706394.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185]
 gi|308433345|gb|EFP57233.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185]
          Length = 608

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 9/213 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              + +  ++ D+ET G       I EIGAV++         F   + P G    P+  +
Sbjct: 21  TPLHDVTFVIVDLETAGGRPGAQGITEIGAVKVRGGEVLGE-FATLVDP-GCAIPPQIQR 78

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT   + + P  +S+   F++F    +A  +AHNA FDVGF+ A  + +   P    
Sbjct: 79  LTGITTAMVHNAPKLASVLPAFFEFLGP-DAVLVAHNAPFDVGFLTAAARDLEV-PWPAP 136

Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            ++DT+ +AR   P      + L +L   +G +++    H AL D+    DV   ++   
Sbjct: 137 AVVDTVKLARALVPRDEVRNHRLGTLAAHFGASVN--PNHRALADAQATVDVLHALLSRA 194

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +    +     F  +        + L    P
Sbjct: 195 GSLGVTSREELLSFSAKVPAARRRKATLADGLP 227


>gi|111224492|ref|YP_715286.1| hypothetical protein FRAAL5108 [Frankia alni ACN14a]
 gi|111152024|emb|CAJ63748.1| putative DNA-directed DNA polymerase [Frankia alni ACN14a]
          Length = 580

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 88/210 (41%), Gaps = 17/210 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + +  +V D+ETTG  +    I EIGAV +    +        + P+     P    + 
Sbjct: 16  LSDLTFVVVDLETTGTSAATSEITEIGAVRVR-GGEVLAEMSTLVRPSAG-IPPMVSVIT 73

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD  +   P+ + +   F +F   + A  +AHNA FD+GF+ A  QR    P      
Sbjct: 74  GITDAMVATAPAEAEVVPTFLEF--ARGAVLVAHNAPFDLGFLRAAAQRCGYPP-PAWEH 130

Query: 124 IDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL IARR      +    L SL + +    S    H AL D+    DV   +      
Sbjct: 131 LDTLRIARRLVSRDEAPDCRLASLARLF--RSSTEPCHRALADARATVDVLHGL--FERL 186

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
            N G +T E+       +    +S  +R K
Sbjct: 187 GNAGVRTLEELH-----EYSARVSPAQRRK 211


>gi|15841682|ref|NP_336719.1| hypothetical protein MT2247 [Mycobacterium tuberculosis CDC1551]
 gi|289754299|ref|ZP_06513677.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|308232063|ref|ZP_07414780.2| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis
           SUMu001]
 gi|308369651|ref|ZP_07418557.2| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis
           SUMu002]
 gi|308370940|ref|ZP_07423289.2| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis
           SUMu003]
 gi|308372166|ref|ZP_07427656.2| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis
           SUMu004]
 gi|308373349|ref|ZP_07431961.2| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis
           SUMu005]
 gi|308374520|ref|ZP_07436352.2| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis
           SUMu006]
 gi|308375805|ref|ZP_07668121.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis
           SUMu007]
 gi|308376938|ref|ZP_07668388.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis
           SUMu008]
 gi|308377937|ref|ZP_07480989.2| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis
           SUMu009]
 gi|308379142|ref|ZP_07485216.2| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis
           SUMu010]
 gi|308380293|ref|ZP_07489432.2| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis
           SUMu011]
 gi|308404461|ref|ZP_07493965.2| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis
           SUMu012]
 gi|13881937|gb|AAK46533.1| DNA polymerase III, epsilon subunit, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|289694886|gb|EFD62315.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|308215084|gb|EFO74483.1| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis
           SUMu001]
 gi|308326837|gb|EFP15688.1| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis
           SUMu002]
 gi|308330190|gb|EFP19041.1| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis
           SUMu003]
 gi|308334026|gb|EFP22877.1| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis
           SUMu004]
 gi|308337834|gb|EFP26685.1| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis
           SUMu005]
 gi|308341594|gb|EFP30445.1| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis
           SUMu006]
 gi|308345002|gb|EFP33853.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis
           SUMu007]
 gi|308349313|gb|EFP38164.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis
           SUMu008]
 gi|308354021|gb|EFP42872.1| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis
           SUMu009]
 gi|308357963|gb|EFP46814.1| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis
           SUMu010]
 gi|308361897|gb|EFP50748.1| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis
           SUMu011]
 gi|308365560|gb|EFP54411.1| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis
           SUMu012]
          Length = 637

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 23/223 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           +   +   +V D+ETTG  +        D I EIGAV++   +     F   + P     
Sbjct: 28  MSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSI 85

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+ ++L GIT   + + P+  ++   F++F    ++  +AHNA FD+GF+ A  +R + 
Sbjct: 86  PPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDI 143

Query: 116 DPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               P +++ T+ +ARR           L +L + + +  +    H AL D+    DV  
Sbjct: 144 TWPQP-QVLCTMRLARRVLSRDEAPSVRLAALARLFAV--ASNPTHRALDDARATVDVLH 200

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            ++      N G  T     + E +  +PN++  +R K +   
Sbjct: 201 ALIERVG--NQGVHT-----YAELRSYLPNVTQAQRCKRVLAE 236


>gi|42782681|ref|NP_979928.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 10987]
 gi|42738607|gb|AAS42536.1| DNA polymerase III, epsilon subunit, putative [Bacillus cereus ATCC
           10987]
          Length = 315

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|73537451|ref|YP_297818.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
 gi|72120788|gb|AAZ62974.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
          Length = 530

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 93/167 (55%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG D+++DRI EIG VE+    +  + +   L P G    P   +L GITDE
Sbjct: 32  IVFVDLETTGADAQHDRITEIGVVEV--GPEGIQEWDTLLDP-GVSIPPFIQRLTGITDE 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ +P+F+SI     +    Q   ++AHNA+FD GF+  E +R        + ++ T+ 
Sbjct: 89  TVQGQPTFASIAEALAERL--QGRLFVAHNARFDYGFLKNEFRRAGLTF--RADVLCTVR 144

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++R   PS +R+ L+++  R+   +  R++H AL D+ LL   + K+
Sbjct: 145 LSRSLFPSAARHGLDAIIARF--DLQPRARHRALADAELLWQFWQKI 189


>gi|221206334|ref|ZP_03579347.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
 gi|221173643|gb|EEE06077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
          Length = 375

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 10/170 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +  D+ETTG      RI EIG VE+        T+   + P G+   P   +L GI
Sbjct: 12  EQPLVFVDLETTGGTPAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQPIPPFIQQLTGI 68

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  ++D PSF+ +    ++  + +   ++AHNA FD GF+ AE +R          ++ 
Sbjct: 69  SDAMVRDAPSFAELAPALFERLDGK--LFVAHNASFDRGFLRAEFERAGFAFNPD--VLC 124

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           T+ ++R   P  SR+ L++L  R+G+  +  ++H AL D+ LL   +  +
Sbjct: 125 TVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLLWQFWRHL 172


>gi|238916793|ref|YP_002930310.1| DNA polymerase III subunit alpha, the Gram-positive type
           [Eubacterium eligens ATCC 27750]
 gi|238872153|gb|ACR71863.1| DNA polymerase III subunit alpha, the Gram-positive type
           [Eubacterium eligens ATCC 27750]
          Length = 1513

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 9/152 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG  ++ DRIIEIGAV++ +    +R F  F+ P           L  I D+
Sbjct: 473 YVVFDLETTGFSAEVDRIIEIGAVKVCNGEIVDR-FSTFVNPEI-PIPFRIETLTHINDQ 530

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P    I  EF +F   + A  +AHNA+FD  FI  + ++I  +    + IIDT+ 
Sbjct: 531 MVMNAPKIEEILPEFLEFC--EGAVMVAHNAEFDTSFIINKAEKIGINV--DTTIIDTVL 586

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHG 159
           +A+   P+  N  L++L K   + +   S H 
Sbjct: 587 LAQFLMPNLHNYKLDTLTKHLNVVLE--SHHR 616


>gi|94989303|ref|YP_597404.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS9429]
 gi|94993192|ref|YP_601291.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS2096]
 gi|123257711|sp|Q1J9R4|DPO3_STRPB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123382486|sp|Q1JJW3|DPO3_STRPC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94542811|gb|ABF32860.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS9429]
 gi|94546700|gb|ABF36747.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS2096]
          Length = 1465

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L+      ++   F DF   +++  +AHNA FDVGF+NA  +R +  P    
Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLRDARE 592


>gi|306826600|ref|ZP_07459906.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782]
 gi|304431208|gb|EFM34211.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782]
          Length = 1465

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L+      ++   F DF   +++  +AHNA FDVGF+NA  +R +  P    
Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLRDARE 592


>gi|294498159|ref|YP_003561859.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium
           QM B1551]
 gi|294348096|gb|ADE68425.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           megaterium QM B1551]
          Length = 933

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 9/165 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D+ETTG   K  D++I+  AV + D     R F  FL P G    P   +L  I 
Sbjct: 4   RFVVVDLETTGHSPKQGDKMIQFAAVIVEDGKIVER-FSSFLNP-GMDIPPFITQLTNIQ 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ +KD P F  I  +  +  +  +A ++AHN  FD+ F+  EL +  ++ L  +  +DT
Sbjct: 62  NDMVKDAPLFEEISPKIIELLD--DAYFVAHNVAFDLTFLQEELYQCGEETL-YNSTVDT 118

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +AR   P+     L+ L +   I   H + H A  D+ + + +
Sbjct: 119 VELARILLPTVDGYKLSQLAEYLHIE--HENPHQADSDAEVTARI 161


>gi|221201212|ref|ZP_03574252.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
 gi|221179062|gb|EEE11469.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
          Length = 398

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 10/170 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +  D+ETTG      RI EIG VE+        T+   + P G+   P   +L GI
Sbjct: 35  EQPLVFVDLETTGGTPAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQPIPPFIQQLTGI 91

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  ++D PSF+ +    ++  + +   ++AHNA FD GF+ AE +R          ++ 
Sbjct: 92  SDAMVRDAPSFAELAPALFERLDGK--LFVAHNASFDRGFLRAEFERAGFAFNPD--VLC 147

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           T+ ++R   P  SR+ L++L  R+G+  +  ++H AL D+ LL   +  +
Sbjct: 148 TVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLLWQFWRHL 195


>gi|160902928|ref|YP_001568509.1| DNA polymerase III PolC [Petrotoga mobilis SJ95]
 gi|160360572|gb|ABX32186.1| DNA polymerase III, alpha subunit [Petrotoga mobilis SJ95]
          Length = 1388

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 94/193 (48%), Gaps = 9/193 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + ++   +VFD+ETTGL+   + IIEIGAV++ +    ++ F   + P  +  S      
Sbjct: 376 KISETEFVVFDLETTGLEPAMNEIIEIGAVKIKNMKIVSK-FHRLVKP-RKPVSNFTSNF 433

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT++ L+ +     +  +F  F   + A  +AHNA FD  FI   ++R+  +  +   
Sbjct: 434 TGITNQMLEVEKPIEEVLPQFLSFI--EGAVLVAHNAIFDYRFIREWVRRVYNEHFE-QT 490

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            IDT+++++         L  + +   + +  H   H A  D+++ + V++K++      
Sbjct: 491 YIDTVALSKSLLTLKSYGLAKVVEELKLGSFEH---HRAHEDANITALVFLKLIEMAKSQ 547

Query: 182 NFGFKTNEDRFFK 194
           N    ++ ++  K
Sbjct: 548 NVEMLSDLEKLKK 560


>gi|171056716|ref|YP_001789065.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170774161|gb|ACB32300.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
          Length = 210

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 87/204 (42%), Gaps = 8/204 (3%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTG+   +  R  EIGAV +       + +Q  +  +G    P   +L GI++
Sbjct: 4   IAVIDFETTGMTPSQGARATEIGAVLVRGGEIVGQ-YQSLMY-SGVHIPPFIEQLTGISN 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L+D P    +  E   F   +    +AHNA FD GF  AE +R   +P        T+
Sbjct: 62  AMLRDAPPAEQVMREVAAF--TRGCPMVAHNAAFDRGFWLAERERAGCEPDLAQEFACTV 119

Query: 128 SIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            ++RR +  +  + L +L   +G+  + R  H AL D+   + + +++    +Q  +  +
Sbjct: 120 LLSRRLNTEAPNHKLGTLASWFGLPNNGR-AHRALADALTTAHLLVRLQDLVAQ-RYADQ 177

Query: 187 TNEDRFFKEEKKTVPNISLLKRDK 210
                   E    +      + D+
Sbjct: 178 LQGRPVRHELLAALQRAPKTQLDR 201


>gi|13959345|sp|Q9CDT7|DPO3_LACLA RecName: Full=DNA polymerase III polC-type; Short=PolIII
          Length = 1638

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 8/183 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +  +  F  F+ P G + S    +L GITD+
Sbjct: 596 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDD 653

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      + ++F  F   +    +AHNA FDVGF+N    R    P+    ++DTL 
Sbjct: 654 HVKNAKPLYEVLTKFQKFC--EGTILVAHNATFDVGFMNMNYSRNGL-PIITQPVVDTLE 710

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            AR  +P   R  L  L K++ I + H   H A  D+     +    +      N G+ +
Sbjct: 711 FARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDAEATGRLLFVFLEELRTRNTGWTS 768

Query: 188 NED 190
             +
Sbjct: 769 LLE 771


>gi|255068237|ref|ZP_05320092.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sicca ATCC 29256]
 gi|255047507|gb|EET42971.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sicca ATCC 29256]
          Length = 449

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 10/160 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+E+TG +   DR+ EI  +   +       ++  + P G+      ++L GIT+E +
Sbjct: 2   VVDLESTGGNLYQDRVTEIAFLRFENGR--VEHYEQLINP-GKPIPEFVVQLTGITNEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P+F  I  +       + +  +AHN++FD  F+  E  R   D   P+  + T+ ++
Sbjct: 59  AQAPAFDQIAPDILPLL--RGSLIVAHNSRFDYTFLRHEFYRAGIDFAAPA--LCTVQLS 114

Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           RR +P   +++L+S+  R GI    R  H AL D   L+D
Sbjct: 115 RRLYPQFYKHNLDSIISRMGIQTDDR--HRALADVLALAD 152


>gi|15674106|ref|NP_268281.1| DNA polymerase III PolC [Lactococcus lactis subsp. lactis Il1403]
 gi|12725180|gb|AAK06222.1|AE006440_8 DNA polymerase III, alpha chain [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 1658

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 8/183 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +  +  F  F+ P G + S    +L GITD+
Sbjct: 616 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDD 673

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      + ++F  F   +    +AHNA FDVGF+N    R    P+    ++DTL 
Sbjct: 674 HVKNAKPLYEVLTKFQKFC--EGTILVAHNATFDVGFMNMNYSRNGL-PIITQPVVDTLE 730

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            AR  +P   R  L  L K++ I + H   H A  D+     +    +      N G+ +
Sbjct: 731 FARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDAEATGRLLFVFLEELRTRNTGWTS 788

Query: 188 NED 190
             +
Sbjct: 789 LLE 791


>gi|139474447|ref|YP_001129163.1| DNA polymerase III PolC [Streptococcus pyogenes str. Manfredo]
 gi|166217453|sp|A2RGI3|DPO3_STRPG RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|134272694|emb|CAM30965.1| DNA polymerase III PolC-type [Streptococcus pyogenes str. Manfredo]
          Length = 1465

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L+      ++   F DF   +++  +AHNA FDVGF+NA  +R +  P    
Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLRDARE 592


>gi|42527504|ref|NP_972602.1| DNA polymerase III domain-containing protein [Treponema denticola
           ATCC 35405]
 gi|41818089|gb|AAS12513.1| DNA polymerase III domain protein [Treponema denticola ATCC 35405]
 gi|325473756|gb|EGC76945.1| DNA polymerase III domain-containing protein [Treponema denticola
           F0402]
          Length = 217

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 8/164 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
              FD ETTG ++K +R++EIG V+        R + V + P  +   PEA K++ ITDE
Sbjct: 16  FTAFDTETTGTEAKAERVVEIGCVKFDIRGVIAR-YNVLIDPE-KPMPPEAGKVNQITDE 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  +P F+ +  +F DF   +N   +AHNA FD+ FIN EL+R  K  L  +++ DTL+
Sbjct: 74  MLAGQPKFAEVLPDFLDFI--RNTVLVAHNASFDINFINCELERCGKTKL-TNKVFDTLT 130

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            AR   P      L +L  ++G+   +   H A  D+ +  + +
Sbjct: 131 FARETLPGLQSYALQNLATQFGVQAVN--AHRAEDDARVCMEFF 172


>gi|56475526|ref|YP_157115.1| exonuclease [Aromatoleum aromaticum EbN1]
 gi|56311569|emb|CAI06214.1| conserved hypothetical protein, possibly exonuclease [Aromatoleum
           aromaticum EbN1]
          Length = 642

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 12/204 (5%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61
            +++   VFD ETTGLD  K D II+IGA  +++       +F+  + P  R  SPE++K
Sbjct: 447 LSELTYTVFDTETTGLDPSKGDEIIQIGATRIVNSKLLRQESFEQLIDPE-RGVSPESVK 505

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT + L  +P+ + +   F  F   Q+   IAHNA FD+ F+  +          P 
Sbjct: 506 IHGITPDMLAGQPTIARVLPAFHAF--AQDTVLIAHNAAFDMRFLQLKETMTGLRFDQP- 562

Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DTL ++   HP    + L ++ +R  +TI  R  H AL D+ + ++V +K++   ++
Sbjct: 563 -VLDTLLLSAVVHPNQESHRLEAIAERLNLTIIGR--HTALGDAIVTAEVLLKLIPLLAE 619

Query: 181 INFGFKTNEDRFFKEEKKTVPNIS 204
              G  T  +     EK     + 
Sbjct: 620 --KGIHTLGEARRAAEKSYYARVK 641


>gi|322411039|gb|EFY01947.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 1465

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L+      ++   F DF   +++  +AHNA FDVGF+NA  +R +  P    
Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLKDARE 592


>gi|315303836|ref|ZP_07874324.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           ivanovii FSL F6-596]
 gi|313627797|gb|EFR96442.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           ivanovii FSL F6-596]
          Length = 928

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R IV D+ETTG  + ++DRII+  A   ++  K   T+  FL P  +       +L G
Sbjct: 3   QKRYIVVDLETTGNQASRDDRIIQFAAC-FVESGKRLETYATFLNPE-KPIPAFIQELTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + ++D P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +
Sbjct: 61  ISPKDVRDAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMNRAGIS-LGKMKKL 117

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           DT+ +AR  +P      L  L   +G  + H   H A  D+ + +D
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 161


>gi|313891131|ref|ZP_07824750.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120494|gb|EFR43614.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 1466

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 86/171 (50%), Gaps = 8/171 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 421 MDLHEATYVVFDVETTGLSAINNDLIQIAASKMYKGNIIEQ-FDEFINP-GHPLSTFTTE 478

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  L        +   F DF   QN   +AHNA FDVGF+NA  +R    PL   
Sbjct: 479 LTGITDNHLIGAKPILKVLEAFQDFC--QNTILVAHNASFDVGFMNANYERHQL-PLINQ 535

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     + 
Sbjct: 536 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLL 584


>gi|54302908|ref|YP_132901.1| putative DNA polymerase III [Photobacterium profundum SS9]
 gi|46916332|emb|CAG23101.1| putative DNA polymerase III [Photobacterium profundum SS9]
          Length = 214

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 84/174 (48%), Gaps = 9/174 (5%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N    IV D ETTGL   + DR IEIGAV + +    +R FQ  + P G + S       
Sbjct: 11  NANTVIVLDFETTGLSPTQGDRAIEIGAVLMENGEVVDR-FQKLMNP-GFRVSSFIESYT 68

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT+  L+       +  +F DF  + N   +AHNA FD  F++AEL  IN+        
Sbjct: 69  GITNNMLRTAAPCDEVMDQFTDFIGDYN--LVAHNASFDKRFLDAELDIINRSY--GGEF 124

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             ++ IARR + +   + L SL     I       H AL DS + + ++++M+ 
Sbjct: 125 ACSMLIARRLYQNAPNHKLGSLVAYKNID-HDGVFHRALADSEMTAKLWLQMLE 177


>gi|319651314|ref|ZP_08005444.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp.
           2_A_57_CT2]
 gi|317397094|gb|EFV77802.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp.
           2_A_57_CT2]
          Length = 933

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 9/164 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + +V D+ETTG    K D+II+  AV + +   T   +   + P  +   P   +L G++
Sbjct: 4   KYVVVDLETTGNAPKKGDKIIQFAAVVIENGKIT-EEYSSLVNPE-QSIPPFIEELTGLS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE +++ P FS I  +       + A ++AHN  FD+ F+  EL     +      ++DT
Sbjct: 62  DEMVENAPLFSEIAPKVLTLL--EGAYFVAHNVLFDLSFLQEELIEAGYNGF-YGPVLDT 118

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + +AR   P++    L+ L  R G  ++H   H A  D+++ ++
Sbjct: 119 VEMARILFPTADSFKLSDLALREG--LNHERPHQADSDAYVTAE 160


>gi|281492785|ref|YP_003354765.1| DNA polymerase III subunit alpha [Lactococcus lactis subsp. lactis
           KF147]
 gi|281376437|gb|ADA65923.1| DNA polymerase III, alpha subunit [Lactococcus lactis subsp. lactis
           KF147]
          Length = 1638

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 8/183 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +  +  F  F+ P G + S    +L GITD+
Sbjct: 596 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDD 653

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      + ++F  F   +    +AHNA FDVGF+N    R    P+    ++DTL 
Sbjct: 654 HVKNAKPLYEVLTKFQKFC--EGTILVAHNATFDVGFMNMNYSRNGL-PIITQPVVDTLE 710

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            AR  +P   R  L  L K++ I + H   H A  D+     +    +      N G+ +
Sbjct: 711 FARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDAEATGRLLFVFLEELRTRNTGWTS 768

Query: 188 NED 190
             +
Sbjct: 769 LLE 771


>gi|221213616|ref|ZP_03586590.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
 gi|221166405|gb|EED98877.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
          Length = 375

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 10/170 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +  D+ETTG      RI EIG VE+        T+   + P G+   P   +L GI
Sbjct: 12  EQPLVFVDLETTGGTPAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQPIPPFIQQLTGI 68

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  ++D PSF+ +    ++  +     ++AHNA FD GF+ AE +R          ++ 
Sbjct: 69  SDAMVRDAPSFAELAPALFERLD--GKLFVAHNASFDRGFLRAEFERAGFAFNPD--VLC 124

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           T+ ++R   P  SR+ L++L  R+G+  +  ++H AL D+ LL   +  +
Sbjct: 125 TVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLLWQFWRHL 172


>gi|51892851|ref|YP_075542.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51856540|dbj|BAD40698.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 958

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 9/160 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG   ++DR+IE+ AV   D  +    F   + P G         L GI   
Sbjct: 6   FVAIDVETTGTSPEHDRLIEVAAVRFEDGREIG-CFSRLIDP-GCPVPQRIQHLTGIHPA 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  KP    +  +   F    +   +AHNA FDV F+ A   R  +    P+   DT  
Sbjct: 64  MLAGKPRIEEVVPDLASFLG--DLPLVAHNAPFDVAFLQAAFARAGRSL--PNWSYDTAE 119

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLL 167
           +AR   P +RN  L +L +  G+ + H   H A  D+   
Sbjct: 120 LARVALPLARNHRLATLAELLGLPLEHH--HRAEDDARAC 157


>gi|284991755|ref|YP_003410309.1| DNA polymerase III subunit epsilon [Geodermatophilus obscurus DSM
           43160]
 gi|284065000|gb|ADB75938.1| DNA polymerase III, epsilon subunit [Geodermatophilus obscurus DSM
           43160]
          Length = 609

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 94/234 (40%), Gaps = 29/234 (12%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           ++  +V D+ETTG   K+  I EIGAV++         FQ  + P G +  P    L GI
Sbjct: 36  EVTFVVVDLETTGGSPKDSAITEIGAVKVRGGEVLGE-FQTLVDP-GCEIPPYISVLTGI 93

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   +   P   ++   F +F   + A  +AHNA FD+GF+ A     N  P   +  +D
Sbjct: 94  TSTMVAAAPRIGAVLPHFLEF--ARGAVLVAHNAPFDLGFLKAACA-ANGIPWPATASVD 150

Query: 126 TLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           T  +ARR           L +L   +    S    H AL D+    DV   +      + 
Sbjct: 151 TAVLARRLLSRDEVPNCKLATLAPYF--RTSTEPCHRALADARATVDVLHGLFERLGPL- 207

Query: 183 FGFKTNED---------------RFFKEEKKTVPNISLLK--RDKPLFTRITKE 219
            G  + E+               R   +     P + L +  RD+PL+   + +
Sbjct: 208 -GITSLEELTGLTRQVDPDRLRKRHLADAVPHGPGVYLFRGPRDEPLYVGTSTD 260


>gi|30263558|ref|NP_845935.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Ames]
 gi|47528957|ref|YP_020306.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186408|ref|YP_029660.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Sterne]
 gi|65320888|ref|ZP_00393847.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bacillus anthracis str. A2012]
 gi|165871011|ref|ZP_02215662.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0488]
 gi|167636474|ref|ZP_02394772.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0442]
 gi|167640607|ref|ZP_02398869.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0193]
 gi|170688408|ref|ZP_02879616.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0465]
 gi|170708125|ref|ZP_02898572.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0389]
 gi|177652488|ref|ZP_02934955.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0174]
 gi|190565123|ref|ZP_03018044.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|229603113|ref|YP_002867802.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0248]
 gi|254686178|ref|ZP_05150037.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
           CNEVA-9066]
 gi|254726056|ref|ZP_05187838.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. A1055]
 gi|254738651|ref|ZP_05196354.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744791|ref|ZP_05202469.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Kruger
           B]
 gi|254752968|ref|ZP_05205004.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Vollum]
 gi|254759240|ref|ZP_05211266.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
           Australia 94]
 gi|30258193|gb|AAP27421.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. Ames]
 gi|47504105|gb|AAT32781.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49180335|gb|AAT55711.1| DNA polymerase III, epsilon subunit, putative [Bacillus anthracis
           str. Sterne]
 gi|164713222|gb|EDR18748.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0488]
 gi|167511475|gb|EDR86859.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0193]
 gi|167528133|gb|EDR90925.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0442]
 gi|170126933|gb|EDS95813.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0389]
 gi|170667578|gb|EDT18333.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0465]
 gi|172082162|gb|EDT67229.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0174]
 gi|190564440|gb|EDV18404.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|229267521|gb|ACQ49158.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0248]
          Length = 315

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R      + L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRIMSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|326800820|ref|YP_004318639.1| DNA polymerase III subunit epsilon [Sphingobacterium sp. 21]
 gi|326551584|gb|ADZ79969.1| DNA polymerase III, epsilon subunit [Sphingobacterium sp. 21]
          Length = 463

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 9/173 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   + DIETTG  +    I EI A+ + D +     ++  + P           L GI+
Sbjct: 1   MEYAIVDIETTGGHAAGHGITEI-AICIHDGAGICHRYETLVNPQAH-IPLHISALTGIS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E + D P+F+ I +  +     +   ++AHN  FD  FI   L          +  + T
Sbjct: 59  NEMVADAPTFAEIAATVYQLL--EGRIFVAHNVNFDYSFIKHHLAFCGYSW--NAPKLCT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           + ++R+  P  +   L  LC++  I+I++R  H A  D+     ++  ++  G
Sbjct: 115 VRLSRKVLPGFASYSLGKLCQQLNISITNR--HRAGGDATATGILFSLLLEKG 165


>gi|47458892|ref|YP_015754.1| DNA polymerase III PolC [Mycoplasma mobile 163K]
 gi|47458220|gb|AAT27543.1| DNA polymerase III alpha subunit [Mycoplasma mobile 163K]
          Length = 1433

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 6/164 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL    D IIE GA ++L+    + T Q F+ PN ++ S +   + GI ++
Sbjct: 400 YVVFDLETTGLSPIFDDIIEFGAQKILNGKVID-TLQFFVKPN-KEISEKITLITGIKNQ 457

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++  S      +  +F  +     +AHNA FD+ FIN ++++ N       +IIDTL 
Sbjct: 458 DVENAISEKEALKKILEFMGDH--TVVAHNATFDMNFINEKIEKYNFQE-SNLQIIDTLV 514

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +++   P   +  L +L  R GI  +    H A  D+ +L+ V+
Sbjct: 515 VSKIIEPEAKKFSLENLASRSGIIYNSTEAHRADYDADVLAKVW 558


>gi|149183101|ref|ZP_01861552.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. SG-1]
 gi|148849178|gb|EDL63377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. SG-1]
          Length = 933

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 89/178 (50%), Gaps = 9/178 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + +V D+ETTG   K  D+II++ A+ ++       ++  F+ P G        +L GI 
Sbjct: 5   KIVVVDLETTGNSPKKGDKIIQLAAM-VVQGGAVVDSYTTFVNP-GITIPSFIEELTGIH 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  +KD P FS I  +  +  +   A + AHN +FD+GF+ AEL+    +P       DT
Sbjct: 63  DGMVKDAPEFSEIAPKVLELLD--GAVFCAHNVQFDLGFLQAELEEAGYNPFS-GPSFDT 119

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           + +A+   P++    L  L  R+  +++H   H A  D+ + +++ I  +   +++  
Sbjct: 120 VELAKITLPTADSYKLTELSDRF--SLNHSRPHQADSDALVTAELLIHFIEKLAKLPL 175


>gi|148245142|ref|YP_001219835.1| DNA polymerase III subunit epsilon [Clostridium kluyveri DSM 555]
 gi|146337022|gb|ABQ23633.1| DNA polymerase III, epsilon subunit related exonuclease
           [Clostridium kluyveri DSM 555]
          Length = 441

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGL+   D IIEI A +  +    + T+   + P      P    ++ I ++
Sbjct: 131 FVVVDLETTGLEPTRDYIIEIAAAKYENNEIID-TYTTLVNPEVF-IPPNITNINHIDND 188

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +   F +F  +     +AHNA FD+ F               + IIDTL 
Sbjct: 189 MVKDCPEIKEVLPGFMNFIGQ--LPLVAHNAPFDIKF--LNANLALLGLYLNNPIIDTLP 244

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           I+R+       + L ++ +   I +     H AL D ++   +Y++
Sbjct: 245 ISRKLFSEIENHKLGTIKEYLNIDVQD--SHRALPDCYVCGQIYLE 288


>gi|229220849|ref|YP_287921.2| DNA polymerase III PolC [Mycoplasma hyopneumoniae 7448]
 gi|144575503|gb|AAZ53898.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448]
          Length = 1469

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 97/200 (48%), Gaps = 7/200 (3%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +K++ ++FD+ETTGL +  + IIE GAV L +  +  +  Q F+ P G K  P   K+ G
Sbjct: 407 DKLKFVIFDLETTGLSAFYNEIIEFGAVVLQNGIEIEKH-QFFIKPTG-KIPPAITKITG 464

Query: 65  ITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           I+ + + +   S+     +       +++  +AHNA FD  F+    ++  K  L  + I
Sbjct: 465 ISQKMIDETAISWEIALEKITKII--KDSVLVAHNAAFDFSFLEQFFRQKAKKSL-KNPI 521

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDTL ++R  +P+ + + L ++ KRY I  +    H A  D+ +L+ ++   +      N
Sbjct: 522 IDTLEVSRFLNPNEKSHSLKNVAKRYEIEYAEEIAHRADYDAKILTTIWKNFLAELKSQN 581

Query: 183 FGFKTNEDRFFKEEKKTVPN 202
               T+         +  P 
Sbjct: 582 INDLTSLSEIKNSIFELRPE 601


>gi|219684048|ref|YP_002470430.1| hypothetical protein CKR_P20 [Clostridium kluyveri NBRC 12016]
 gi|219570556|dbj|BAH08539.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 444

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGL+   D IIEI A +  +    + T+   + P      P    ++ I ++
Sbjct: 134 FVVVDLETTGLEPTRDYIIEIAAAKYENNEIID-TYTTLVNPEVF-IPPNITNINHIDND 191

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +   F +F  +     +AHNA FD+ F               + IIDTL 
Sbjct: 192 MVKDCPEIKEVLPGFMNFIGQ--LPLVAHNAPFDIKF--LNANLALLGLYLNNPIIDTLP 247

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           I+R+       + L ++ +   I +     H AL D ++   +Y++
Sbjct: 248 ISRKLFSEIENHKLGTIKEYLNIDVQD--SHRALPDCYVCGQIYLE 291


>gi|289640817|ref|ZP_06472988.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca
           glomerata]
 gi|289509393|gb|EFD30321.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca
           glomerata]
          Length = 629

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 29/244 (11%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             ++  +V D+ETTG  + +  I EIGAV++    +        + P+     P    L 
Sbjct: 88  LREVTFVVVDLETTGSRAADSEITEIGAVKIR-GGEVLAELATLVRPD-APIPPFISVLT 145

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD  +   P   +    F +F     +  +AHNA FD+GF+     R    P+     
Sbjct: 146 GITDAMVATAPRIDAALPTFLEF--AHGSVLVAHNAPFDLGFLREACVRCGH-PVPDWEH 202

Query: 124 IDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL IAR+         + L SL + +         H AL D+     V   +      
Sbjct: 203 LDTLRIARQVLGRDETPDHKLASLARLF--PADAGPCHRALADARATVAVLHGL--FERL 258

Query: 181 INFGFKTNED---------------RFFKEEKKTVPNISLLK--RDKPLFTRITKEELDE 223
             FG  T E+               R   ++  T P + + +   D+PL+   ++     
Sbjct: 259 GGFGVTTLEELHGFSRKVSPARRRKRHLADDLPTGPGVYIFRDSTDRPLYVGTSRSVRAR 318

Query: 224 HDKT 227
               
Sbjct: 319 VRSY 322


>gi|88801444|ref|ZP_01116972.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P]
 gi|88782102|gb|EAR13279.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P]
          Length = 462

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 13/198 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V DIETTG   K  +I EI A+ + D  K    F   + P  +        L GIT
Sbjct: 1   MLYAVVDIETTGNGPKGQKITEISAL-IFDGKKIVDEFTSLVNPE-QNIPAFITSLTGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +++ P F  I  +  +    +N  ++AHN  FD   I AE + +  D     + + T
Sbjct: 59  NAMVRNAPRFFEIAKKVAEI--TENTIFVAHNVNFDYNIIQAEFKSLGFDF--KRKKLCT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           + + R+  P      L ++C    I I+ R  H A  D+   +++  +++    + +  F
Sbjct: 115 IRLTRKIIPGLPSYSLGNICTGENIPINGR--HRAKGDAEATAELLRRLI----ERDENF 168

Query: 186 KTNEDRFFKEEKKTVPNI 203
             N     K  + T+P +
Sbjct: 169 TINSFLNPKSRQATLPPL 186


>gi|119898701|ref|YP_933914.1| DNA polymerase III epsilon subunit-like protein [Azoarcus sp. BH72]
 gi|119671114|emb|CAL95027.1| DNA polymerase III epsilon chain-like protein [Azoarcus sp. BH72]
          Length = 734

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/202 (28%), Positives = 101/202 (50%), Gaps = 12/202 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLH 63
           ++   VFD ETTGL+  + D II+IGAV +L+        F+  + P  R    E+ ++H
Sbjct: 541 ELTYTVFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDP-CRPLPEESARVH 599

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT + L  +P   ++   F  F    +   +AHNA FD+ F+  +          P  +
Sbjct: 600 GITADMLAGQPVIEAVLPSFHAF--AADTVLVAHNAAFDMRFLQLKEDLTGLRFDQP--V 655

Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +DTL ++   HP+   + L ++ +R GIT+  R  H AL D+ + ++V++K++   ++  
Sbjct: 656 LDTLLLSAVIHPNQDSHRLEAIAERLGITVVGR--HTALGDAMVTAEVFLKLVPLLAE-- 711

Query: 183 FGFKTNEDRFFKEEKKTVPNIS 204
            G +T  +     EK     I 
Sbjct: 712 KGIRTLREAREAAEKSYYARIK 733


>gi|159039058|ref|YP_001538311.1| hypothetical protein Sare_3518 [Salinispora arenicola CNS-205]
 gi|157917893|gb|ABV99320.1| DNA polymerase III, epsilon subunit [Salinispora arenicola CNS-205]
          Length = 585

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/253 (24%), Positives = 101/253 (39%), Gaps = 24/253 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       I EIGAV++    +        + P G    P    L GIT  
Sbjct: 32  FVVVDLETTGGAPDGGGITEIGAVKVRGGEQLG-VLATLVNP-GVPVPPFVTVLTGITQA 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   PS + +   F +F +  +A  +AHNA +DVGF+ A          +P RI+DT +
Sbjct: 90  MLLPAPSIAQVLPSFLEFLSA-DAVLVAHNAPYDVGFLKAACAAHGHRWPNP-RILDTAA 147

Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +ARR           L +L   +    S +  H AL D+    DV   ++  +GG +++ 
Sbjct: 148 LARRVLSRDEVPNRRLGTLAAYF--RTSTQPTHRALDDAKATVDVLHGLIARLGGHRVHT 205

Query: 184 GFKTNE-----------DRFFKEEKKTVPNISLLKR--DKPLFTRITKEELDEHDKTIQT 230
             +  E            R   E     P + L +   D+PL+   + +           
Sbjct: 206 IGEAIEFARAVTPTQRRKRHLAEGLPRTPGVYLFRGADDRPLYVGTSVDIATRVRSYFTA 265

Query: 231 LGKNAIWDRYISS 243
             K A     +++
Sbjct: 266 AEKRARISEMLAA 278


>gi|299821667|ref|ZP_07053555.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601]
 gi|299817332|gb|EFI84568.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601]
          Length = 929

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M RK K R +V D+ETTG  + ++DRII+  A  L++ SK   T+  F+ P  R+  P  
Sbjct: 1   MKRKEK-RYLVVDLETTGNQANRHDRIIQFAA-TLVEGSKRLETYSTFINPE-REIPPFI 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L GI      D P F+ +     +    ++  ++AHN  FD  F+  E+QR    PL 
Sbjct: 58  QQLTGIKPSDCYDAPIFTDVAPIIQNLL--EDCIFVAHNVSFDWTFLAREMQRAGY-PLP 114

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            ++ +DT+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 115 KTKKLDTVELARIIYPGIDSYKLQDLSDEFK--LGHDRPHQADSDAEVTAD 163


>gi|227813558|ref|YP_002813567.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. CDC 684]
 gi|227004983|gb|ACP14726.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. CDC 684]
          Length = 315

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R      + L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRIMSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|78065586|ref|YP_368355.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
 gi|77966331|gb|ABB07711.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
          Length = 378

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 10/169 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +  D+ETTG      RI EIG VE+        T+   + P G+   P   +L 
Sbjct: 11  ASEQPLVFVDLETTGGSPAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQPIPPFIQQLT 67

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+DE ++D PSF+S+    ++  +     ++AHNA FD GF+ AE +R          +
Sbjct: 68  GISDEMVRDAPSFASLAPALFERLD--GKLFVAHNASFDRGFLRAEFERAGFAFNPD--V 123

Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           + T+ ++R   P   R+ L++L +R+G+  +  ++H AL D+ LL   +
Sbjct: 124 LCTVRLSRALFPRETRHGLDALIERHGLVPA--ARHRALADADLLLQFW 170


>gi|254510913|ref|ZP_05122980.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacteraceae bacterium KLH11]
 gi|221534624|gb|EEE37612.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacteraceae bacterium KLH11]
          Length = 470

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 7/169 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGL    D I++IGAV ++           + + P G      + ++H I D
Sbjct: 278 FVVFDTETTGLLPHKDEIVQIGAVRVIKGRIVEGEQLDMLVDP-GIPIPAASTRVHKIND 336

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P  +     F  F   ++A  +AHNA FD+ F++   +R+  +   P  ++DT+
Sbjct: 337 AMVLGAPDIAKAGLIFHQF--SRDAVIVAHNAPFDMAFLHRHAKRMGVEWTHP--VLDTV 392

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++     +S  + L+++C R G+TI    +H AL D+   ++V ++M+
Sbjct: 393 LLSAVLFGASETHTLDAVCARLGVTIPATLRHTALGDAVATAEVLVRML 441


>gi|258653407|ref|YP_003202563.1| hypothetical protein Namu_3243 [Nakamurella multipartita DSM 44233]
 gi|258556632|gb|ACV79574.1| DNA polymerase III, epsilon subunit [Nakamurella multipartita DSM
           44233]
          Length = 613

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 13/208 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             ++  +V D+ETTG     + I EIGAV++         F   + P GR   P+   L 
Sbjct: 44  LREVTFVVVDLETTGGSPATEAITEIGAVKVRGGQVLGE-FATLVDP-GRTIPPQITMLT 101

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT+  + D P  SS+   F +F   + +  +AHNA+FDVGF+ A   R  + P     +
Sbjct: 102 GITNAMVYDAPRISSVLPAFLEF--ARGSVLVAHNARFDVGFLRAACAR-QQVPWPGPAV 158

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +DT+ +AR+  P +    +        +    R  H AL D+    DV   +      + 
Sbjct: 159 VDTVRLARKVLPRAEAPSVRLSALAALLGARTRPDHRALTDARATVDVLHALFERLGSLG 218

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDK 210
                       E +    +++  +R K
Sbjct: 219 VH-------SLAELQDASRDVAPQRRRK 239


>gi|291278558|ref|YP_003495393.1| hypothetical protein DEFDS_0125 [Deferribacter desulfuricans SSM1]
 gi|290753260|dbj|BAI79637.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 207

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 98/178 (55%), Gaps = 9/178 (5%)

Query: 3   RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEA 59
           + N++   VFDIE+TG++    DRI+EIGAV++      +    F V + P G     ++
Sbjct: 12  KINEVEYCVFDIESTGINPFDGDRIVEIGAVKIKPGFVIDYKNKFHVLVNP-GIPIPEDS 70

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGITDE + + P     +  F +F   +    +AHNA+ D+ F+    +    D   
Sbjct: 71  QKIHGITDEDVANAPDECEAYYNFIEF--AKGCIPVAHNARKDMAFLRRISKEYLIDEPF 128

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITI-SHRSKHGALLDSHLLSDVYIKMM 175
              ++DTL+++++ +  SR ++L++L ++Y + I S+  +H AL D+   S ++  MM
Sbjct: 129 EF-VLDTLALSKKVNVLSRYHNLDALIEKYNVRIKSNYKRHRALYDAEATSVIFKIMM 185


>gi|222152446|ref|YP_002561621.1| DNA polymerase III PolC [Streptococcus uberis 0140J]
 gi|222113257|emb|CAR40776.1| DNA polymerase III PolC-type [Streptococcus uberis 0140J]
          Length = 1465

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 15/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMYKGNIIEQ-FDEFIDP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  L        +  EF  F    +   +AHNA FD+GF+NA  +R    P    
Sbjct: 478 LTGITDNHLIGAKPLLQVLEEFQAFC--HDTVLVAHNASFDIGFMNANYERNGL-PQITQ 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLLFIFLKEARE 592

Query: 181 -------INFGFKTNEDRFFKEEKKTVPNISL 205
                  ++   K   +  +K+ +     I +
Sbjct: 593 KHGVTDLLDLNIKLVAEDSYKKARIKHATIYV 624


>gi|269956792|ref|YP_003326581.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305473|gb|ACZ31023.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 584

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 90/224 (40%), Gaps = 23/224 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
               ++  +V D+ETTG  + +  I EIGAV++         FQ  + P GR+      +
Sbjct: 26  TPLREVTFVVVDLETTGTRTTDSGITEIGAVKVRGGEVLGE-FQSLVNP-GREVPAFVAR 83

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT   +   PS   +   F ++    +   +AHNA FDVGF+ A    +   P    
Sbjct: 84  LTGITTAMVSTAPSIDLVLPSFLEW--AHDCVLVAHNAPFDVGFLKAAAAGLGY-PWPGF 140

Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--- 175
            ++DT+ +ARR  P      + L +L   +   ++    H AL D+    DV   ++   
Sbjct: 141 PVVDTVPLARRVVPKDEAPNHKLATLAHLFRARVTPE--HRALADARATVDVLHGLLDRL 198

Query: 176 -VGGSQINFGFKTNED---------RFFKEEKKTVPNISLLKRD 209
              G Q      T  D         R   +     P + L K  
Sbjct: 199 GAMGVQHLEDLATAADPVPPDVRKKRHLADGLPEAPGVYLFKGP 242


>gi|257784354|ref|YP_003179571.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
 gi|257472861|gb|ACV50980.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
          Length = 342

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGLD     IIEI A++++D   T   F   + P  R+    A  ++ IT+ 
Sbjct: 78  YVVVDLETTGLDVHYCEIIEIAALKVVDGKIT-EEFSSLIHPP-REIPSGATAINHITNH 135

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
            +K+ P+   +  +F  F   +    I HN+ ++D   +     R  +D L      DT 
Sbjct: 136 MVKNAPTLDKVIPQFDTFV--KGFPLIGHNSLRYDAIVLEENFFR--RDFLCDYVWYDTY 191

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +AR+        L ++ KR  +   H   H AL D ++   +Y KM
Sbjct: 192 KLARQIL-EPPYKLINIAKRLNVK-QHGKAHRALADCYMTYGIYEKM 236


>gi|254489685|ref|ZP_05102881.1| exonuclease family [Methylophaga thiooxidans DMS010]
 gi|224465094|gb|EEF81347.1| exonuclease family [Methylophaga thiooxydans DMS010]
          Length = 488

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 9/166 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTG  +  DR+ EI  +E+ D     R +Q  L P  R   P   +L GITD  
Sbjct: 12  VILDCETTGGRASRDRLTEIALIEVEDGHVVKR-WQTLLNP-LRPIPPWITRLTGITDAT 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+F  I  E   F        +AHNA+FD  F+    QR        ++ + ++ +
Sbjct: 70  VADAPTFDEIADEL--FACLDGKVIVAHNARFDYSFLRQSFQRCGYTL--GNKTLCSVKL 125

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R+  P  R + L+ + +R G+TI +R  H A+ D+ +L   +  +
Sbjct: 126 SRQLFPEHRSHGLDRIIERLGLTIDNR--HRAMADTEVLLAFFEHI 169


>gi|71893884|ref|YP_279330.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae J]
 gi|71852011|gb|AAZ44619.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J]
          Length = 1468

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 7/200 (3%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +K++ ++FD+ETTGL +  + I+E GAV L +  +  +  Q F+ P G K  P   K+ G
Sbjct: 406 DKLKFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKH-QFFIKPTG-KIPPAITKITG 463

Query: 65  ITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           I+ + + +   S+     +       +++  +AHNA FD  F+    ++  K  L  + I
Sbjct: 464 ISQKMIDETAISWEIALEKITKII--KDSVLVAHNAAFDFSFLEQFFRQKAKKSL-KNPI 520

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDTL ++R  +P+ + + L ++ KRY I       H A  D+ +L+ ++   +      N
Sbjct: 521 IDTLEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIWKNFLAELKSQN 580

Query: 183 FGFKTNEDRFFKEEKKTVPN 202
               T+         +  P 
Sbjct: 581 INDLTSLSEIKNSIFELRPE 600


>gi|71911485|ref|YP_283035.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS5005]
 gi|71854267|gb|AAZ52290.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS5005]
          Length = 1465

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L+      ++   F DF   +++  +AHNA FDVGF+NA  +R +  P    
Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLKDARE 592


>gi|91775906|ref|YP_545662.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
 gi|91709893|gb|ABE49821.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
          Length = 462

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 86/167 (51%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG     DRI EIG +   +  +  R +Q  + P     SP    + GI++ 
Sbjct: 5   YVLLDLETTGATPVTDRITEIGLIRYENGIEVKR-WQTLVNPEMH-ISPFITSITGISNA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P F  + +E         A   AHN +FD GF+  E +R+  D      ++ T+ 
Sbjct: 63  MVKDAPLFKDVANELLSHL--HGAVLCAHNVRFDYGFLKNEFRRL--DITLRQNVLCTVK 118

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++RR +P  + + L+++  R+GI  +  ++H A+ D  ++++ ++ +
Sbjct: 119 LSRRLYPEYKSHGLDAIIARHGIACA--ARHRAMGDVEVMAE-FLHI 162


>gi|21911223|ref|NP_665491.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS315]
 gi|28896601|ref|NP_802951.1| DNA polymerase III PolC [Streptococcus pyogenes SSI-1]
 gi|25452927|sp|Q8K5S8|DPO3_STRP3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21905436|gb|AAM80294.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
           MGAS315]
 gi|28811855|dbj|BAC64784.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
           SSI-1]
          Length = 1465

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L+      ++   F DF   +++  +AHNA FDVGF+NA  +R +  P    
Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLKDARE 592


>gi|94995162|ref|YP_603260.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10750]
 gi|123382133|sp|Q1J4M0|DPO3_STRPF RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94548670|gb|ABF38716.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10750]
          Length = 1465

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L+      ++   F DF   +++  +AHNA FDVGF+NA  +R +  P    
Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLKDARE 592


>gi|15675759|ref|NP_269933.1| DNA polymerase III PolC [Streptococcus pyogenes M1 GAS]
 gi|81175278|sp|P0C0B8|DPO3_STRP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13622981|gb|AAK34654.1| DNA polymerase III (alpha subunit) [Streptococcus pyogenes M1 GAS]
          Length = 1465

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L+      ++   F DF   +++  +AHNA FDVGF+NA  +R +  P    
Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLKDARE 592


>gi|225419839|ref|ZP_03762142.1| hypothetical protein CLOSTASPAR_06180 [Clostridium asparagiforme
           DSM 15981]
 gi|225041521|gb|EEG51767.1| hypothetical protein CLOSTASPAR_06180 [Clostridium asparagiforme
           DSM 15981]
          Length = 255

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/238 (26%), Positives = 99/238 (41%), Gaps = 16/238 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIETTGL+ + D+I EI A+ ++D +   R F   + P GR      ++L GITD 
Sbjct: 16  YVAIDIETTGLEPRLDKITEIAALRVVDGAVEGR-FVTLVNP-GRPLGERIVELTGITDG 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P+   +      F    +   + HN  FD  F+         D       IDTL+
Sbjct: 74  MLAGAPAIGDVIGPLVRFCG--DLPLLGHNILFDYSFLKRAAVNQGLDF--QREGIDTLN 129

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           + R   P   + +L++ C  Y I       H A  D+     +Y K++ G  +      T
Sbjct: 130 LCRAFMPGEHKKNLSAACAFYCIE--QVEAHRAEADALSAHLLYQKLLEGRGEGREELFT 187

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDRYIS 242
            +   +K +K+      + KR K     + K    +    I TL +N    + DR +S
Sbjct: 188 PKSLIYKAKKEQ----PVTKRQKEYLQDLIKCHRIDVTVQIDTLSRNEASRMIDRILS 241


>gi|50915026|ref|YP_060998.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10394]
 gi|73919253|sp|Q5X9U8|DPO3_STRP6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|50904100|gb|AAT87815.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10394]
          Length = 1465

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +
Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD+ L+      ++   F DF   +++  +AHNA FDVGF+NA  +R +  P    
Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLKDARE 592


>gi|229179896|ref|ZP_04307242.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W]
 gi|228603577|gb|EEK61052.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W]
          Length = 315

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +       +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-LEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|332668025|ref|YP_004450813.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM
           1100]
 gi|332336839|gb|AEE53940.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 463

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 9/171 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K +  + D+ETTG  +  DRIIEI  V   D ++   +++  + P           L GI
Sbjct: 2   KKKYAIIDVETTGGKASRDRIIEIAVVIH-DGNQILESWESLINPET-LIPWNITILTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+ + + P F  +  +  +    + A ++AHNA+FD  FI  E +R+        + + 
Sbjct: 60  NDQMVANAPKFYEVARKIVEL--TEGAIFVAHNARFDYSFIGEEFKRLGYTY--TRKQLC 115

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +AR+  P      L++L + + I   ++++H A+ D      V   ++
Sbjct: 116 TLRLARQTLPGLYAYGLDALSRHFNI--HNQARHRAMGDVQATIKVLEYIL 164


>gi|295696154|ref|YP_003589392.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
 gi|295411756|gb|ADG06248.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
          Length = 1428

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 9/188 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD ETTGL+++   +IEI AV++      +  +   + P G   SP+  +L GIT +
Sbjct: 416 FVVFDTETTGLNAREHTLIEIAAVKVRGGELVD-HYTSLIDP-GVPISPKIQELTGITSD 473

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K +P  S +   F  F     A  +AHNA+FD+GF+ +  +++ + P D   ++DTL+
Sbjct: 474 MVKGQPGLSEVLEAFRKF--AAGAVLVAHNAEFDMGFLQSAARKLGQPPWD-HPVLDTLA 530

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR  +P  RN  L +L +++ + + +   H A  D+   + V++ ++            
Sbjct: 531 LARVLYPRERNHRLKTLTQKFNVELVNH--HRAAADAEATAKVFLHLLREAEARGAH-HL 587

Query: 188 NEDRFFKE 195
           +E     E
Sbjct: 588 DECNALGE 595


>gi|54020575|ref|YP_116058.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae 232]
 gi|53987748|gb|AAV27949.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 232]
          Length = 1469

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 7/200 (3%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +K++ ++FD+ETTGL +  + I+E GAV L +  +  +  Q F+ P G K  P   K+ G
Sbjct: 407 DKLKFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKH-QFFIKPTG-KIPPAITKITG 464

Query: 65  ITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           I+ + + +   S+     +       +++  +AHNA FD  F+    ++  K  L  + I
Sbjct: 465 ISQKMIDETAISWEIALEKITKII--KDSVLVAHNAAFDFSFLEQFFRQKAKKSL-KNPI 521

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDTL ++R  +P+ + + L ++ KRY I       H A  D+ +L+ ++   +      N
Sbjct: 522 IDTLEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIWKNFLAELKSQN 581

Query: 183 FGFKTNEDRFFKEEKKTVPN 202
               T+         +  P 
Sbjct: 582 INDLTSLSEIKNSIFELRPE 601


>gi|226360268|ref|YP_002778046.1| hypothetical protein ROP_08540 [Rhodococcus opacus B4]
 gi|226238753|dbj|BAH49101.1| putative DNA polymerase III epsilon subunit [Rhodococcus opacus B4]
          Length = 588

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 86/212 (40%), Gaps = 17/212 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
                   +V D+ETTG     D I EIGAV++             + P GR   P  ++
Sbjct: 17  TPLRDTTFVVVDLETTGARPGEDAITEIGAVKIRGGEVIAE-MATLVDP-GRSIPPHIVE 74

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           + GIT   + D P    +   F +F   + A  +AHNA FD GF+ A     +  P    
Sbjct: 75  ITGITTAMVIDAPRIERVLPAFLEF--ARGAVLVAHNAPFDTGFLKAAAAATD-TPWPKF 131

Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            ++ T+ +ARR           L+SL +   +  +    H AL D+    DV   ++   
Sbjct: 132 TVLCTVKLARRVLTRDEAPSVKLSSLARLLDVGTT--PTHRALDDARATVDVLHALI--A 187

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
              N G  +       E    +P++S  +R K
Sbjct: 188 RVGNQGVHS-----LTELVDYLPDVSSHQRAK 214


>gi|212696923|ref|ZP_03305051.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676213|gb|EEB35820.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 1010

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 11/162 (6%)

Query: 15  ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP 74
           ETTGL   +D+I EIGAV++ +   T   F   + P  +    + ++L GIT+E + DKP
Sbjct: 2   ETTGLYKYSDKITEIGAVKVENGEIT-EVFNELVNPE-KMIPEKVVELTGITNEMVMDKP 59

Query: 75  SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH 134
               I  +F +F   ++A ++  N  FD+GFI      ++         +DTL +AR   
Sbjct: 60  KIDEILPKFLEF--SKDAYFVGQNTDFDIGFIKEACDNLSYQFEPV--YLDTLPMARAVF 115

Query: 135 PS-SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKM 174
           PS  R  L+ L K+  +   +H   H A  D+   + V+IK+
Sbjct: 116 PSMGRFSLDKLAKKLAVGPFNH---HRASDDAMTTAKVFIKL 154


>gi|225163449|ref|ZP_03725765.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
 gi|224801949|gb|EEG20229.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
          Length = 197

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 7/174 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  ++FD+ETTG   + + II+I AV L+D   ++ TF  ++ P  R       +L GIT
Sbjct: 1   MNLVIFDLETTGFSPRWNDIIQIAAVRLVDGRISDETFSTYVSP-RRPVPDHITELTGIT 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNA-KFDVGFINAELQRINKDPLDPSRII 124
           D  + D P  S     F  F  +      +AHN  +FD+ FI          P+ P R I
Sbjct: 60  DADVADAPETSDALRAFARFVGDVGPTTLVAHNGHRFDMRFIAESCTLHGL-PMRPIRFI 118

Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKMM 175
           D++ ++++  P+   ++L+ + +R GI   I+   +H A  D HLL++   +M+
Sbjct: 119 DSIWLSKKLWPAESLHNLDVIVERLGIETGITGHRRHDARADVHLLANAVRRMI 172


>gi|148543926|ref|YP_001271296.1| DNA polymerase III PolC [Lactobacillus reuteri DSM 20016]
 gi|184153322|ref|YP_001841663.1| DNA polymerase III PolC [Lactobacillus reuteri JCM 1112]
 gi|227364835|ref|ZP_03848882.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3]
 gi|325682539|ref|ZP_08162056.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A]
 gi|166918295|sp|A5VJD5|DPO3_LACRD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|148530960|gb|ABQ82959.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           reuteri DSM 20016]
 gi|183224666|dbj|BAG25183.1| DNA polymerase III alpha subunit [Lactobacillus reuteri JCM 1112]
 gi|227070098|gb|EEI08474.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3]
 gi|324978378|gb|EGC15328.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A]
          Length = 1443

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
              ++FD+ETTGL +  D++IE+ AV++ D +     F  F+ P G   S +   L  IT
Sbjct: 424 QTYVIFDVETTGLSAIYDKVIELSAVKMQDGN-VLERFDEFIDP-GFPLSEQTTNLTSIT 481

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++   +   +F  F DF   +      HN  FD+GF+N   +R     +    +IDT
Sbjct: 482 TEMVQGSKTEEEVFQMFKDFC--KGCIIAGHNVSFDMGFMNTGYERHQMGKIAE-PVIDT 538

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L +AR  +P  R   LN+L K++ + + H   H A  DS     +  K +
Sbjct: 539 LPLARFLYPDMRGYRLNTLSKKFKVALEHH--HRANYDSEATGHLLYKFL 586


>gi|71279381|ref|YP_267529.1| exonuclease [Colwellia psychrerythraea 34H]
 gi|71145121|gb|AAZ25594.1| exonuclease [Colwellia psychrerythraea 34H]
          Length = 203

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 9/179 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            N    I+ D ETTGL   N DR IEIGAV+L +   T+R FQ  + P GR  S      
Sbjct: 1   MNANSLIILDFETTGLSPDNGDRAIEIGAVKLENGVVTDR-FQELMYP-GRPVSHFIADY 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT+  L        +   F  F   QN   +AHNA FD  F+++EL+RI+       +
Sbjct: 59  TGITNVMLSKAAPCHEVMDRFSGFIQGQN--LVAHNASFDKRFLDSELKRISSG--YDGQ 114

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              +L ++RR + +   + L +L    GI  S+ S H AL DS + + +++ M+    Q
Sbjct: 115 FACSLLLSRRLYQTAPNHKLGTLINYKGIA-SNGSFHRALYDSEMTAKLWVAMLDDIQQ 172


>gi|194467743|ref|ZP_03073729.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
 gi|194452596|gb|EDX41494.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
          Length = 1443

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
              ++FD+ETTGL +  D++IE+ AV++ D +     F  F+ P G   S +   L  IT
Sbjct: 424 QTYVIFDVETTGLSAIYDKVIELSAVKMQDGN-VLERFDEFIDP-GFPLSEQTTNLTSIT 481

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++   +   +F  F DF   +      HN  FD+GF+N   +R     +    +IDT
Sbjct: 482 TEMVQGSKTEEEVFQMFKDFC--KGCIIAGHNVAFDMGFMNTGYERHQMGKIAE-PVIDT 538

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L +AR  +P  R   LN+L K++ + + H   H A  DS     +  K +
Sbjct: 539 LPLARFLYPDMRGYRLNTLSKKFKVALEHH--HRANYDSEATGHLLYKFL 586


>gi|254252965|ref|ZP_04946283.1| DNA polymerase III [Burkholderia dolosa AUO158]
 gi|124895574|gb|EAY69454.1| DNA polymerase III [Burkholderia dolosa AUO158]
          Length = 375

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 10/172 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +  D+ETTG  S   RI EIG VE+        T+   + P G+   P   +L 
Sbjct: 10  ASEQPLVFVDLETTGGSSAEHRITEIGVVEV--GPLGVSTWTTLVNP-GQSIPPFIQQLT 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+D  ++D PSF+S+    ++  +     ++AHNA FD GF+ AE +R          +
Sbjct: 67  GISDAMVRDAPSFASLAPALFERLD--GKLFVAHNASFDRGFLRAEFERAGYAFNPD--V 122

Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + T+ ++R   P   R+ L++L +R+G+  S  ++H AL D+ LL   + ++
Sbjct: 123 LCTVRLSRALFPREARHGLDALIERHGLVPS--ARHRALADADLLWQFWRQL 172


>gi|90414417|ref|ZP_01222394.1| putative DNA polymerase III [Photobacterium profundum 3TCK]
 gi|90324530|gb|EAS41086.1| putative DNA polymerase III [Photobacterium profundum 3TCK]
          Length = 214

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 90/203 (44%), Gaps = 10/203 (4%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N    IV D ETTGL   + DR IEIGAV + +    +R FQ  + P G + S       
Sbjct: 11  NANTVIVLDFETTGLSPTQGDRAIEIGAVLMENGKVVDR-FQKLMNP-GFRVSSFIEGYT 68

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT+  L+     + +  +F DF  + N   +AHNA FD  F++AEL  I +        
Sbjct: 69  GITNNMLRTAAPCNEVMDQFTDFIGDYN--LVAHNASFDKRFLDAELDIIKRSY--GGEF 124

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
             ++ IARR + +   + L SL     I       H AL DS + + ++++M+    Q  
Sbjct: 125 ACSMLIARRLYQNAPNHKLGSLVAYKNID-HDGVFHRALADSEMTAKLWLQMLEDL-QNQ 182

Query: 183 FGFKTNEDRFFKEEKKTVPNISL 205
           F          ++  K     + 
Sbjct: 183 FHIPQPSFALMQQVSKKTKAAAP 205


>gi|302338443|ref|YP_003803649.1| DNA polymerase III subunit epsilon [Spirochaeta smaragdinae DSM
           11293]
 gi|301635628|gb|ADK81055.1| DNA polymerase III, epsilon subunit [Spirochaeta smaragdinae DSM
           11293]
          Length = 210

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 83/174 (47%), Gaps = 8/174 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD ETTGLDS  DRI+EIGAV      KT  TF   + P G    P +  +HGITD+
Sbjct: 25  FVSFDFETTGLDSFRDRILEIGAVSWRQG-KTKETFSSLVRP-GIPVPPASTAVHGITDD 82

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P        F  F   + A  +AHN  FD GF+ + + R+    L  +  IDTL+
Sbjct: 83  DLLDAPDEKGALVSFLRFIEGKVA--VAHNLPFDYGFLESSVDRLGLS-LGDTLFIDTLT 139

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++RR +P      L +L       +     H AL D+     ++ + +    Q+
Sbjct: 140 LSRRVYPGLPSYALGNLITFLN--LFQEDAHRALSDASDCGRLFFRCLDEDKQM 191


>gi|227544953|ref|ZP_03975002.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300910016|ref|ZP_07127476.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112]
 gi|227185064|gb|EEI65135.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300892664|gb|EFK86024.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112]
          Length = 1443

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
              ++FD+ETTGL +  D++IE+ AV++ D +     F  F+ P G   S +   L  IT
Sbjct: 424 QTYVIFDVETTGLSAIYDKVIELSAVKMQDGN-VLERFDEFIDP-GFPLSEQTTNLTSIT 481

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++   +   +F  F DF   +      HN  FD+GF+N   +R     +    +IDT
Sbjct: 482 TEMVQGSKTEEEVFQMFKDFC--KGCIIAGHNVAFDMGFMNTGYERHQMGKIAE-PVIDT 538

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L +AR  +P  R   LN+L K++ + + H   H A  DS     +  K +
Sbjct: 539 LPLARFLYPDMRGYRLNTLSKKFKVALEHH--HRANYDSEATGHLLYKFL 586


>gi|154500376|ref|ZP_02038414.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC
           29799]
 gi|150270881|gb|EDM98164.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC
           29799]
          Length = 1390

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 31/247 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FDIETTGLD++ D IIEIGAV L +  +   TF  F+ P GR  S E ++L  ITD+ 
Sbjct: 370 VCFDIETTGLDNRRDVIIEIGAVILRNG-EIAETFDTFVSP-GRPLSREIVELTSITDKM 427

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+  PS       F +F  ++     AHNA+FD+GFI    +R        S  IDTL +
Sbjct: 428 LEGAPSQEEAIRAFLEFAGDR--PLAAHNAEFDMGFIAEGCRRYGIPFEKTS--IDTLIL 483

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGGSQINFGF 185
           A+   P   +  L+ + +   + +     H A  D+ +++ +   + KM+      + G 
Sbjct: 484 AQNLLPDLGKYKLDIVAEH--LRLPPFKHHRADADAGMVAYMLVPFFKMLE-----DLGI 536

Query: 186 KTNED--------RFFKEEKKTVPNISLLKRD----KPLFTRITKEELDEHDKTIQTLGK 233
            T +         R   + ++   ++ +L ++    + L+T I+K  L EH K    +  
Sbjct: 537 HTLQSINPEMTRLRVKGKARRQPKHLIVLAKNNMGLRNLYTLISKAHL-EHFKRYPIM-P 594

Query: 234 NAIWDRY 240
            ++ ++Y
Sbjct: 595 KSLINQY 601


>gi|134299597|ref|YP_001113093.1| DNA polymerase III subunit epsilon [Desulfotomaculum reducens MI-1]
 gi|134052297|gb|ABO50268.1| DNA polymerase III, epsilon subunit [Desulfotomaculum reducens
           MI-1]
          Length = 930

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 12/176 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +  +  D+ET+GLD   D IIEIG V+++D  + + +F   + P G     +  +L GI 
Sbjct: 2   LNFVALDLETSGLDCLQDEIIEIGLVKMVDGKEID-SFSTLIRPKG-ILPVKIKRLTGIK 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  L+D P    +      F    +   + HN KFD  F++  +Q    +PL      DT
Sbjct: 60  DHELQDAPKLQEVLPVILQFIA--DLPLVGHNVKFDYDFLSTAVQSPLANPL-----YDT 112

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           L +++   P  S + L  LC   GI I ++  H AL D+   + + I ++    ++
Sbjct: 113 LELSKYLMPGASNHRLGYLCSYLGIDIPNQ--HRALDDARGAAMLLIHLLNQCEEM 166


>gi|89099885|ref|ZP_01172757.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911]
 gi|89085443|gb|EAR64572.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911]
          Length = 934

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 9/178 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + +V D+ETTG  +K  D+II+  AV +++  K    +   L P G++      +L G+ 
Sbjct: 4   KYVVVDLETTGNSAKKGDKIIQFAAV-VMEGGKIIDQYSSLLNP-GKEIPAFIEELTGLN 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  +  +    ++A ++AHN  FD+ F+  EL            +IDT
Sbjct: 62  DSMVSDAPVFAEIAPKVMELL--EDAYFVAHNVLFDLSFLQEELLDAGFPGF-YGPVIDT 118

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           + +AR   P S    L+ L  + GI   H   H A  D++  + +    +    ++  
Sbjct: 119 VELARTVLPCSDSYKLSDLSAKEGIM--HDRPHQADSDAYATAKLLHIFLERLEELPL 174


>gi|294339674|emb|CAZ88034.1| putative protein fusion of DNA polymerase III, epsilon subunit and
           Excinuclease ABC, C subunit [Thiomonas sp. 3As]
          Length = 469

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 96/210 (45%), Gaps = 14/210 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG +   DRI E+ AV  ++  +    +   + P G++  P   +L GI D 
Sbjct: 5   YVLLDLETTGSNPVLDRITEV-AVMRVEQGEVVAKWSRLVNP-GQRIPPFIQQLTGIDDA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+F  +  E     +   A  +AHN +FD GF+     R   D     + + T+ 
Sbjct: 63  MVAGAPAFGEVLPELLAALD--GAVLVAHNVRFDHGFLKQAAAREGVDL--RVKTLCTVR 118

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R+ +P +R + L+++ +R+G+  +  ++H A+ D  LL   ++ +    +Q   G  +
Sbjct: 119 LSRKLYPQARGHGLDAIMRRHGLHTT--ARHRAMGDVELLHQ-WLHI----AQTELGPAS 171

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
            +    +  + +      L+         +
Sbjct: 172 VQTAALELLRGSASLPPHLETPVDDIPEAS 201


>gi|322417781|ref|YP_004197004.1| putative PAS/PAC sensor protein [Geobacter sp. M18]
 gi|320124168|gb|ADW11728.1| putative PAS/PAC sensor protein [Geobacter sp. M18]
          Length = 835

 Score =  154 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 9/173 (5%)

Query: 6   KMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLH 63
            +  +VFD ETTGL  S+ D+++ I AV +      N   F   + P GR    E+   H
Sbjct: 638 DLEYVVFDTETTGLQISQGDKVVSISAVRIRRGKVQNADIFHTLVNP-GRHIPAESTAFH 696

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I D  + D PS + ++ +F  +    +A  +AHNA FD   ++         PL  + I
Sbjct: 697 RIEDHMVADAPSMNEVYPQFVKYAG--DAVLVAHNAAFDKKCLDMAAAEAGL-PLVENPI 753

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DTL ++   H  +  + L+++ +R GI I  R  H +L D+   + +++ ++
Sbjct: 754 LDTLFLSVGLHSGTEGHSLDAMAQRMGIAIEGR--HTSLGDARATAQIFLGLL 804


>gi|325983091|ref|YP_004295493.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
 gi|325532610|gb|ADZ27331.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
          Length = 463

 Score =  154 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 85/161 (52%), Gaps = 9/161 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG+    DRI EIG +   +  +T R +   + P G    P   +L GIT +
Sbjct: 8   YVLLDLETTGVTPTQDRITEIGLIRYENGVETGR-WNTLINP-GINIPPFIQRLTGITQD 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+FS ++     + ++  A   AHNA+FD GF+  E +RI        +++ T+ 
Sbjct: 66  MVDHAPTFSQVYETLLQWLDQ--AVLCAHNARFDYGFLKNEFKRIGVTF--QKKLLCTVK 121

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           ++R+ +P    + LN++ +R+ +    R  H A+ D+ +++
Sbjct: 122 LSRKLYPQHHSHSLNAIIERFRLICDQR--HRAMGDTEMIA 160


>gi|170726548|ref|YP_001760574.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908]
 gi|169811895|gb|ACA86479.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908]
          Length = 205

 Score =  154 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 87/200 (43%), Gaps = 10/200 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M+       IV D ETTGL   + DR IEIGAV+L D      TFQ  + P G + +   
Sbjct: 1   MLNPASNSAIVLDFETTGLSPNQGDRAIEIGAVKLEDG-VVVDTFQALMNP-GFRITSFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GIT++ L        +   F DF     +  +AHNA FD  F++AEL  IN+    
Sbjct: 59  ESYTGITNQMLSTAAPCEVVMDRFADFI--HGSNLVAHNASFDQRFLDAELSLINRHY-- 114

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 ++ IARR +     + L  L     I       H AL DS + + +++ M+   
Sbjct: 115 TGEFACSMLIARRIYQEAPNHKLGGLVAFRQIENDG-VFHRALADSEMTAKLWLTMIED- 172

Query: 179 SQINFGFKTNEDRFFKEEKK 198
            Q  +   T   +  ++  K
Sbjct: 173 IQTRYSITTPSFKLMQKIAK 192


>gi|119471121|ref|ZP_01613653.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7]
 gi|119445777|gb|EAW27059.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7]
          Length = 745

 Score =  154 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG     +R+ EIG V+ + + K   T+   + P  R       KL GI+D 
Sbjct: 579 YSVVDIETTGGLKGGNRVTEIGIVK-VQHGKVIDTWTTLINPQ-RHIPSFITKLTGISDG 636

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P F+ I     D      + ++AHN  FD GFI  E +            + T+ 
Sbjct: 637 MVYNAPVFADIAQPLLDKLA--GSIFVAHNVNFDYGFIKKECEVAGH--FFKMPKMCTVV 692

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +RR     +   L +L   + + ++  S H AL D+   +++ + +
Sbjct: 693 ESRRAFKGLKSYSLGNLSAHFNLNLT--SHHRALADATATAELLLLI 737


>gi|317056777|ref|YP_004105244.1| DNA polymerase III subunit alpha [Ruminococcus albus 7]
 gi|315449046|gb|ADU22610.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7]
          Length = 1500

 Score =  154 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 11/177 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FD+ETTG ++K D+IIEIGAV+L +    ++ F + + P     +     L  ITD+
Sbjct: 449 IICFDLETTGTNAKEDKIIEIGAVKLRNLEIVDK-FDMLVDPE-VPLTEFISNLTNITDD 506

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK +    +    F  F  +     +AHNA FD GFI    +R+  D       +DT+ 
Sbjct: 507 MLKGQADIRTAIDAFIAFCGDSPC-LVAHNAPFDTGFIRNTCERLGIDF--NFSSVDTVP 563

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQI 181
           +++   P   R+ LN + + +G        H    D+ +L  ++I   KM++    +
Sbjct: 564 MSQLMLPQLERHKLNYVAEHFG--YGDFQHHRGCDDAEVLGHIFIELSKMLMAQYPL 618


>gi|228998363|ref|ZP_04157954.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17]
 gi|228761284|gb|EEM10239.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17]
          Length = 315

 Score =  154 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  NDRII++ AV   ++   ++ F  F+ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDRIIQVAAVRYRNHELADQ-FVSFVNPE-RFIPNRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F  E     +AHNA FD+ F+ +    + + P   + +IDT+ 
Sbjct: 68  RVSDAPTIQEVLPLFLAFLGED--TIVAHNASFDMRFLKSNANML-RLPEPKNIVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A+R       + L +L +  GI +S    H AL D    + VY K
Sbjct: 125 LAKRYMKHAPNHKLETLKRMLGICLS---SHNALDDCITCAAVYQK 167


>gi|254495198|ref|ZP_05108122.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
 gi|85819550|gb|EAQ40707.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
          Length = 461

 Score =  154 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG   K  +I EI  + + D  K    F   + P  +   P    L GIT+ 
Sbjct: 2   YTVIDIETTGNGFKGQKITEIS-IFVFDGKKIIDEFTSLINPE-QNIPPFITNLTGITNA 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  I  +  +    ++  ++AHN  FD   I  E + +  D     + + T+ 
Sbjct: 60  MVRYAPKFHEIAKKVEEL--TRDTIFVAHNVNFDYNIIRDEFKSLGFDF--KRKKLCTVR 115

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++R+  P  R   L ++C    I I+ R  H A  D+   ++++ +++ 
Sbjct: 116 LSRKIMPGLRSYSLGNICIDENIPINGR--HRAKGDAEATTELFRRLIE 162


>gi|307718875|ref|YP_003874407.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
           6192]
 gi|306532600|gb|ADN02134.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
           6192]
          Length = 198

 Score =  154 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 8/174 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K   + FD+ETTGLD     ++EI  V+     +    F + + P       E  K
Sbjct: 14  IDWRKEVVVTFDLETTGLDPVRHSVVEIACVKFQ-GGEPRAFFSLLVKPP-HPIPAEVTK 71

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI D+ +++ P   S+      F        +AHNA FD+ F+  E  R  + P    
Sbjct: 72  IHGIGDQDVEEAPPLPSVLPMLESFVGTH--LLVAHNAPFDLSFLRMEYARCGR-PYPGF 128

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           R IDT  +AR   P   R  L SL +   I + H   H AL D+    D++  +
Sbjct: 129 RAIDTRLLARSVLPHLGRYSLASLTRALDIPLQHH--HRALSDAWACGDLFYAL 180


>gi|117920694|ref|YP_869886.1| DNA polymerase III subunit epsilon [Shewanella sp. ANA-3]
 gi|117613026|gb|ABK48480.1| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3]
          Length = 229

 Score =  154 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 16/208 (7%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL   +  R IEIGAV +     T R F   + P G + +       GI+++
Sbjct: 31  VVLDFETSGLSPNQGARAIEIGAVLIEQGQITAR-FSELMNP-GFRINSFIEDYTGISNQ 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L      + + + F +F  +     +AHNA FD  F++AE  +I      P +   +L 
Sbjct: 89  MLAHAAPCAEVMARFAEFIGKH--HLVAHNATFDQRFLDAEFSQIGHQY--PGQFGCSLL 144

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR +P +  + L +L +   +  ++ + H AL D+ +   ++++M+    Q   G+  
Sbjct: 145 LARRLYPEAINHQLATLVRHKQLP-TNGTYHRALADAEMTGHLWLRMLADLKQ---GYAI 200

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            E  F   +K     ++  K + P F R
Sbjct: 201 TEPPFSLMQKI----MAKTKAEVPKFLR 224


>gi|71907264|ref|YP_284851.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71846885|gb|AAZ46381.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 721

 Score =  154 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 3   RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEAL 60
           + + +   VFD ETTGL+    D II+IGA  +++       TF   + P      P ++
Sbjct: 525 KLSDLTYTVFDTETTGLEPSNGDEIIQIGAARIVNNRLLRQETFNQIVDPEI-PLKPASI 583

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGIT++ ++ +P+   +   F +F   ++   IAHNA FD+ F+  + +R N     P
Sbjct: 584 PIHGITEDMVRGQPNIDVVLPAFHEFC--EDTVLIAHNAAFDMRFLQLKEERTNIRFTQP 641

Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++DTL ++   HP    + L+ + +R GITI  R  H AL D+    +V++K++    
Sbjct: 642 --VLDTLLLSAVVHPNQESHKLDVILERLGITIGKR--HNALEDALATGEVFLKLVKLLE 697

Query: 180 QINFGFKTNEDRFFKEEKKTVPNIS 204
             + G  T        EK     + 
Sbjct: 698 --DQGIVTVRQALEAAEKTYFARVK 720


>gi|227514713|ref|ZP_03944762.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227086917|gb|EEI22229.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 1447

 Score =  154 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 9/185 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
              ++FDIETTGL +  DRII++ AV++ D  +    F  F+ P G   S +   L  IT
Sbjct: 425 QPYVIFDIETTGLSAIYDRIIQVSAVKMQDG-EVLDHFDQFIDP-GFHLSEQTTALTSIT 482

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ ++   +   +   F DF     +    HN  FD+GF+N   +R     +    +IDT
Sbjct: 483 DDMVQGSKTEEEVLKLFDDF--ADGSLLAGHNVSFDMGFMNVAYERHGMGQI-KQPVIDT 539

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           L +AR  HP  R   LN+L KR+ +++ H   H A  DS     + + + +  ++  +G 
Sbjct: 540 LPLARFLHPDFRGYRLNTLSKRFKVSLEHH--HLASYDSEATGHL-LAIFLKDAEERYGV 596

Query: 186 KTNED 190
              +D
Sbjct: 597 TYVDD 601


>gi|184155198|ref|YP_001843538.1| DNA polymerase III PolC [Lactobacillus fermentum IFO 3956]
 gi|183226542|dbj|BAG27058.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
           fermentum IFO 3956]
          Length = 1447

 Score =  154 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 9/185 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
              ++FDIETTGL +  DRII++ AV++ D  +    F  F+ P G   S +   L  IT
Sbjct: 425 QPYVIFDIETTGLSAIYDRIIQVSAVKMQDG-EVLDHFDQFIDP-GFHLSEQTTALTSIT 482

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ ++   +   +   F DF     +    HN  FD+GF+N   +R     +    +IDT
Sbjct: 483 DDMVQGSKTEEEVLKLFDDF--ADGSLLAGHNVSFDMGFMNVAYERHGMGQI-KQPVIDT 539

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           L +AR  HP  R   LN+L KR+ +++ H   H A  DS     + + + +  ++  +G 
Sbjct: 540 LPLARFLHPDFRGYRLNTLSKRFKVSLEHH--HLASYDSEATGHL-LAIFLKDAEERYGV 596

Query: 186 KTNED 190
              +D
Sbjct: 597 TYVDD 601


>gi|229018800|ref|ZP_04175648.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
 gi|229025042|ref|ZP_04181470.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
 gi|228736248|gb|EEL86815.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
 gi|228742492|gb|EEL92644.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
          Length = 315

 Score =  154 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 9/165 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RPIPNRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   +++IDT+ 
Sbjct: 68  RVSDAPTIEEVLPFFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +A++       + L +L +  GI +S    H A  D    + VY 
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQ 166


>gi|260662302|ref|ZP_05863198.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus fermentum 28-3-CHN]
 gi|260553685|gb|EEX26577.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus fermentum 28-3-CHN]
          Length = 1447

 Score =  154 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 9/185 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
              ++FDIETTGL +  DRII++ AV++ D  +    F  F+ P G   S +   L  IT
Sbjct: 425 QPYVIFDIETTGLSAIYDRIIQVSAVKMQDG-EVLDHFDQFIDP-GFHLSEQTTALTSIT 482

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ ++   +   +   F DF     +    HN  FD+GF+N   +R     +    +IDT
Sbjct: 483 DDMVQGSKTEEEVLKLFDDF--ADGSLLAGHNVSFDMGFMNVAYERHGMGQI-KQPVIDT 539

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           L +AR  HP  R   LN+L KR+ +++ H   H A  DS     + + + +  ++  +G 
Sbjct: 540 LPLARFLHPDFRGYRLNTLSKRFKVSLEHH--HLASYDSEATGHL-LAIFLKDAEERYGV 596

Query: 186 KTNED 190
              +D
Sbjct: 597 TYVDD 601


>gi|227495992|ref|ZP_03926303.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM
           15434]
 gi|226834480|gb|EEH66863.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM
           15434]
          Length = 547

 Score =  154 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 85/220 (38%), Gaps = 12/220 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
               +   +V D+ETTG    +  I EIGAV +    +        + P GR    +   
Sbjct: 24  TPLQETTFVVVDLETTGAGPGSHTITEIGAVRVR-GGQVEDELSTLVNP-GRAIPAQITV 81

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           L GIT+  +   P        F  +    E+    +AHNA+FDVG +    + +  D  +
Sbjct: 82  LTGITNAMVAGAPPVPEALERFLQWARLWEEETVLVAHNARFDVGHLRGAARALELDWHE 141

Query: 120 PSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P R++DTL++ARR         + L +L    G     R  H AL D+    DV    + 
Sbjct: 142 P-RVLDTLALARRAWTRSEVPNHRLATLASFVGSPT--RPTHRALDDARATVDVLHAALE 198

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
               +  G    ED     +       +  +  + L T  
Sbjct: 199 VLGPL--GVTHLEDLATATDPVPARRRAKSRLAQDLPTSP 236


>gi|329569951|gb|EGG51706.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Enterococcus faecalis TX1467]
          Length = 240

 Score =  154 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|86741790|ref|YP_482190.1| hypothetical protein Francci3_3104 [Frankia sp. CcI3]
 gi|86568652|gb|ABD12461.1| DNA polymerase III, epsilon subunit [Frankia sp. CcI3]
          Length = 584

 Score =  154 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 86/205 (41%), Gaps = 17/205 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG     D I EIGAV +    +        + P G    P    L GITD 
Sbjct: 30  FVVFDLETTGTSPGRDEITEIGAVRVR-GGRILAEMATLVRP-GVGIPPMVSVLTGITDV 87

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  + +   F +F   + A  +AHNA FD+GF+ A ++     P+     +DTL 
Sbjct: 88  MVATAPPVTQVLPTFLEF--ARGAVLVAHNAPFDLGFLRAAVELCGY-PVPVWEYLDTLR 144

Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           IARR   +  S    L SL   +   +  R  H AL D+    DV   +       N G 
Sbjct: 145 IARRVVTRDESPDCRLTSLASLFRSPVEPR--HRALADARATVDVLHGL--FERLGNAGV 200

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            T ED            +S  +R K
Sbjct: 201 TTLEDLH-----DYSSRVSPAQRRK 220


>gi|163941216|ref|YP_001646100.1| DNA polymerase III subunit epsilon [Bacillus weihenstephanensis
           KBAB4]
 gi|163863413|gb|ABY44472.1| DNA polymerase III, epsilon subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 315

 Score =  154 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 19/208 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F + +    +AHNA FD+ F+ + +  +   P   + +IDT+ 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTK--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A++       + L +L +  GI +S    H A  D    + VY K              
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQKC----------AAV 171

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            E+   K  K+ +   ++ +  K +  R
Sbjct: 172 EEEGKRKANKEVLDETAVFEAVKEMLVR 199


>gi|212638970|ref|YP_002315490.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Anoxybacillus flavithermus WK1]
 gi|212560450|gb|ACJ33505.1| DNA polymerase III, epsilon subunit and Rad3-related DNA helicase
           [Anoxybacillus flavithermus WK1]
          Length = 880

 Score =  154 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 9/164 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V DIETTG    K DRII+IG V +++  K  + F  F+ P  R       +L GI 
Sbjct: 4   RFVVVDIETTGNAPKKEDRIIQIGFV-VIEGDKVKKRFSTFVQPE-RDIPLFIQQLTGID 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              + D P F  I +   +    + A ++AHN +FD  F+  E  R    P    R++DT
Sbjct: 62  HAMVHDAPPFQHIAAMLVE--QWEGAYFVAHNVQFDWAFLQEEFIRSGIQP-PTCRLLDT 118

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + +AR   P  S   LN L +   ++ +H   H A  D+   + 
Sbjct: 119 VELARFLMPTQSSYKLNHLAEA--LSFAHDRPHQADYDAEATAQ 160


>gi|167586484|ref|ZP_02378872.1| DNA polymerase III, epsilon subunit [Burkholderia ubonensis Bu]
          Length = 375

 Score =  154 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 10/170 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +  D+ETTG  S   RI EIG VE+        T+   + P G+   P   +L GI
Sbjct: 12  EQPLVFVDLETTGGSSAEHRITEIGVVEI--GPLGVSTWTSLVNP-GQPIPPFIQQLTGI 68

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  ++D PSF+S+    ++  +     ++AHNA FD GF+ AE +RI         ++ 
Sbjct: 69  SDAMVRDAPSFASLAPALFERLD--GKLFVAHNASFDRGFLRAEFERIGLAFNPD--VLC 124

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           T+ ++R   P  SR+ L++L +R+G+  S  ++H AL D+ LL   + ++
Sbjct: 125 TVRLSRALFPRESRHGLDALIERHGLVPS--ARHRALADADLLWQFWRQL 172


>gi|126651265|ref|ZP_01723475.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. B14905]
 gi|126592103|gb|EAZ86169.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. B14905]
          Length = 914

 Score =  154 bits (390), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 9/161 (5%)

Query: 13  DIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D+ETTG    N DR+I+I  V + D+ +  RT+  F+ P G+        L  IT+E +K
Sbjct: 2   DLETTGHSPANGDRMIQIAIVIMKDW-EIERTYTKFINP-GKAIPSFIQDLTHITNEDVK 59

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D   F       ++     +  ++AHNA FD+ F+ AE +R    P    + +DT+ +A+
Sbjct: 60  DSYPFEEHADYIYELLA--DCVFVAHNADFDLSFLQAEFKRAGL-PKWQGKKMDTVELAK 116

Query: 132 RKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              P S    L  L     I +++   H A  D+   ++++
Sbjct: 117 ILFPMSLGFKLGDLAADLNIELAN--AHRADDDARATAELF 155


>gi|89902537|ref|YP_525008.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
 gi|89347274|gb|ABD71477.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
          Length = 722

 Score =  154 bits (390), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 93/175 (53%), Gaps = 10/175 (5%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61
            + +   VFD ETTGL+  + D II+IGA  +++       +F+  + P+ R  S  +++
Sbjct: 527 LSDLSYTVFDTETTGLNPAEGDEIIQIGAARIVNKKILRQESFEQLVNPD-RLISAASVQ 585

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT + +  +P    +   F  F   Q+   +AHNA FD+ F+  +          P 
Sbjct: 586 IHGITQDRVIGQPRIGEVLPAFHAF--AQDTVLVAHNAAFDMKFLQLKEAATGLAFHQP- 642

Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++DTL ++   HP    + L ++ +R+ IT+  R  H AL D+ + ++V+++++
Sbjct: 643 -VLDTLLLSAVVHPNQESHRLEAIAERFNITVLGR--HTALGDAMVTAEVWLRLI 694


>gi|15835150|ref|NP_296909.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
 gi|270285322|ref|ZP_06194716.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
 gi|270289339|ref|ZP_06195641.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss]
 gi|301336719|ref|ZP_07224921.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14]
 gi|8163241|gb|AAF73567.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum
           Nigg]
          Length = 232

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 84/216 (38%), Gaps = 16/216 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG     DRI+EI A        T  +FQ  + P       EA K+HGIT   
Sbjct: 5   IFYDTETTGTQIDKDRIVEIAAY----NGTTGESFQTLVNPEI-PIPAEATKIHGITTSE 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAH-NAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           + + P F   + +F DF    N   +AH N  FD   +  E +R    P    R ID+L 
Sbjct: 60  VANAPKFPEAYQQFSDFCGTDN-ILVAHNNNAFDYPLLLRECRRHGL-PEPQLRTIDSLK 117

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            A++      ++ L  L + YG      + H AL D   L  V+  ++   S        
Sbjct: 118 WAKKYRTDLPQHSLQYLRQVYG--FEENNAHRALDDVITLHRVFSVLVGDLSPDQIYNLL 175

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           NE    +  K     +   K      + +    +  
Sbjct: 176 NETCHPRVFK-----MPFGKYKGKPLSEVPSSYIAW 206


>gi|327440746|dbj|BAK17111.1| Rad3-related DNA helicase [Solibacillus silvestris StLB046]
          Length = 926

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 9/171 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            K   +  + DIETTG      DR+I+I  V +  +    + +  F+ P G+        
Sbjct: 1   MKESQKYAIVDIETTGHSPASGDRMIQIAIVIMQGWEIV-KKYSTFINP-GKPIPLFIQD 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  ITDE +KD   F +     ++    + A ++AHN  FD+ F+ AE  R         
Sbjct: 59  LTNITDEDVKDALPFEAYADYIYELL--EGAVFVAHNTDFDLNFLQAEFNRAGLSKWH-G 115

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           + IDT+ + +   P S    L+ L   + I +  +S H A  D+   + + 
Sbjct: 116 KKIDTVELTKILFPMSLSYKLSDLANDFNILL--QSAHRADDDALATAYLL 164


>gi|315187162|gb|EFU20919.1| DNA polymerase III, epsilon subunit [Spirochaeta thermophila DSM
           6578]
          Length = 198

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 8/174 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K   + FD+ETTGLD     ++EI  V+     +    F + + P       E  K
Sbjct: 14  IDWRKEVVVAFDLETTGLDPVRHSVVEIACVKFQ-GGEPRAFFSLLVKPP-HPIPAEVTK 71

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI D+ +++ P   S+      F        +AHNA FD+ F+  E  R  + P    
Sbjct: 72  IHGIGDQDVEEAPPLPSVLPMLESFVGTH--LLVAHNAPFDLSFLRIEYARCGR-PYPGF 128

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           R IDT  +AR   P   R  L SL +   I +  +  H AL D+    D++  +
Sbjct: 129 RAIDTRLLARSVLPHLGRYSLASLTRALDIPL--QQHHRALSDAWACGDLFYAL 180


>gi|218753913|ref|ZP_03532709.1| hypothetical protein MtubG1_10964 [Mycobacterium tuberculosis GM
           1503]
          Length = 493

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 23/223 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           +   +   +V D+ETTG  +        D I EIGAV++   +     F   + P     
Sbjct: 28  MSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSI 85

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+ ++L GIT   + + P+  ++   F++F    ++  +AHNA FD+GF+ A  +R + 
Sbjct: 86  PPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDI 143

Query: 116 DPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               P +++ T+ +ARR           L +L + + +  +    H AL D+    DV  
Sbjct: 144 TWPQP-QVLCTMRLARRVLSRDEAPSVRLAALARLFAV--ASNPTHRALDDARATVDVLH 200

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            ++      N G  T     + E +  +PN++  +R K +   
Sbjct: 201 ALIERVG--NQGVHT-----YAELRSYLPNVTQAQRCKRVLAE 236


>gi|114773251|ref|ZP_01450486.1| hypothetical protein OM2255_00307 [alpha proteobacterium HTCC2255]
 gi|114546370|gb|EAU49279.1| hypothetical protein OM2255_00307 [alpha proteobacterium HTCC2255]
          Length = 313

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 10/169 (5%)

Query: 5   NKM-RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N M   +V DIETTG  + + +I EIG V++++    +  +Q  L P  R+       L 
Sbjct: 137 NPMQPYVVVDIETTGGRATSHKITEIGMVKVINGQVVDE-YQTLLNPK-RRIPRNITALT 194

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI D  + + P F+ +  E   F   +   ++AHN  FD GFI  E  R+ +        
Sbjct: 195 GIDDVMVSNAPIFAEVADEVAQF--TKGCVFVAHNVNFDYGFIKQEFTRLERHF--SRAK 250

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           + T+   R+  P  +   L +L + +GI +S    H A+ D+   +++ 
Sbjct: 251 LCTVREMRKARPGLASYSLANLTRHFGIEMS--RHHRAMSDAIAANELL 297


>gi|308069470|ref|YP_003871075.1| DnaQ family exonuclease/DinG family helicase, [Paenibacillus
           polymyxa E681]
 gi|305858749|gb|ADM70537.1| DnaQ family exonuclease/DinG family helicase, putative
           [Paenibacillus polymyxa E681]
          Length = 955

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 8/215 (3%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  V D ETTG  S +D II++G   +   +  +R +  ++ P GR   P    L GIT
Sbjct: 1   MKFAVLDFETTGTQSADD-IIQVGLAIIDHDNSISRVYGSYVNP-GRSIPPFITGLTGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +KD P+   +  E     +  +   + HN  FD  F+   L R    P    RI+DT
Sbjct: 59  DDDVKDAPALEEMMMELVPMLD--DVVLVGHNVAFDFNFLQNALDRCGYLPFS-GRILDT 115

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +   +   PS S   L  +   +   ++H   H A  D+   ++V++K +     +    
Sbjct: 116 MDFLKIMFPSLSSYQLGFVSSEF--ELAHDRPHQADSDALATAEVFLKCLGELQALPLIT 173

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
                  F EE   +       R++     I   E
Sbjct: 174 IQRLSDLFAEEDSDLGWFLDGVREEKELDPIQDLE 208


>gi|239617281|ref|YP_002940603.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239506112|gb|ACR79599.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 1430

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGLD   D IIEIGAV+L         F  F+ P  R  S +  ++ GI+D 
Sbjct: 419 YVVFDLETTGLDPSADEIIEIGAVKLKGTEVIGE-FSSFVKPE-RNLSEKVTRITGISDR 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D PS S +  +F +F   +++  +AHNA FD  F+   ++++  +       IDTL+
Sbjct: 477 ELEDAPSLSEVLPKFLEFC--KDSVLVAHNATFDYRFVRNAVKQLYNEDWKL-PYIDTLA 533

Query: 129 IARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +++    S    L+++ KR  +    H   H A  D+ + ++V+ K++    +   
Sbjct: 534 LSKSLLKSKSYSLDNVVKRLKLGDFEH---HRASEDARITAEVFKKLLSMAKKRGI 586


>gi|138895754|ref|YP_001126207.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus thermodenitrificans NG80-2]
 gi|134267267|gb|ABO67462.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2]
          Length = 911

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 106/245 (43%), Gaps = 26/245 (10%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR ++ D+ETTG    K DRII++G   + D S   R F  F  P  +       +L  I
Sbjct: 3   MRFVIIDLETTGNVPKKGDRIIQLGMAVVEDGSIVKR-FASFFNPE-QPIPLFIQQLTNI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            ++ ++  P F+    E       + A ++AHN  FD+ F+ AEL+R    P      ID
Sbjct: 61  DEQTVEGAPLFADKADEITAMM--EGAYFVAHNVDFDLPFLQAELERAGWPPF-TGPTID 117

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---------- 174
           T+ +AR   P+     L  L K+ G  + H   H A  D+ + + ++I +          
Sbjct: 118 TVELARIVLPTAESYKLGDLAKQLG--LHHDRPHQADSDAEVTAKLFIALLERLGRLPLV 175

Query: 175 -MVGGSQINFGFKTN----EDRFFKEEKKTVP--NISLLKRDKPLFTRITKEELDEHDKT 227
            +    ++    K++     D    E++K  P  N   L R   L    +K E  + +K 
Sbjct: 176 TLEQLRRLAHHLKSDIYSLLDLVITEKQKEAPMDNTIALYRGIALKKPASKPESGDDEKR 235

Query: 228 IQTLG 232
           + ++ 
Sbjct: 236 LASVS 240


>gi|325847082|ref|ZP_08169908.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481054|gb|EGC84099.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 1010

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 11/162 (6%)

Query: 15  ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP 74
           ETTGL   +D+I EIGAV++ +   T   F   + P  +    + ++L GIT+E + DKP
Sbjct: 2   ETTGLYKYSDKITEIGAVKVENGEIT-EVFNELVNPE-KMIPEKVVELTGITNEMVMDKP 59

Query: 75  SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH 134
               I  +F +F   ++A ++  N  FD+GF+      ++         +DTL +AR   
Sbjct: 60  KIDEILPKFLEF--SKDAYFVGQNTDFDIGFVKEACDNLSYQFEPI--YLDTLPMARAVF 115

Query: 135 PS-SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKM 174
           PS  R  L+ L K+  +   +H   H A  D+   + V+IK+
Sbjct: 116 PSMGRFSLDKLAKKLAVGPFNH---HRASDDAMTTAKVFIKL 154


>gi|196248636|ref|ZP_03147336.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           G11MC16]
 gi|196211512|gb|EDY06271.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           G11MC16]
          Length = 911

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 104/245 (42%), Gaps = 26/245 (10%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR ++ D+ETTG    K DRII++G   + D S   R F  F  P  +       +L  I
Sbjct: 3   MRFVIIDLETTGNVPKKGDRIIQLGMAVVEDGSIVKR-FASFFNPE-QPIPLFIQQLTNI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            ++ ++  P F+    E       + A ++AHN  FD+ F+ AEL+R    P      ID
Sbjct: 61  DEQTVEGAPLFADKADEITAMM--EGAYFVAHNVDFDLPFLQAELERAGWPPF-TGPTID 117

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF- 183
           T+ +AR   P+     L  L K+ G  + H   H A  D+ + + ++I ++    ++   
Sbjct: 118 TVELARIVLPTAESYKLGDLAKQLG--LHHDRPHQADSDAEVTAKLFIALLERLGRLPLV 175

Query: 184 --------------GFKTNEDRFFKEEKKTVP--NISLLKRDKPLFTRITKEELDEHDKT 227
                            +  D    E++K  P  N   L R   L    +K E  + +K 
Sbjct: 176 TLEQLRRLVHHLKSDIYSLLDLVITEKQKEAPMDNTIALYRGIALKKPASKPESGDDEKR 235

Query: 228 IQTLG 232
           + ++ 
Sbjct: 236 LASVS 240


>gi|134295037|ref|YP_001118772.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
 gi|134138194|gb|ABO53937.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 375

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 91/172 (52%), Gaps = 10/172 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +  D+ETTG      RI EIG VE+        T+   + P G+   P   +L 
Sbjct: 10  ASEQPLVFVDLETTGGSPAEHRITEIGVVEIGPGHM--STWTTLVNP-GQPIPPFIQQLT 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+D+ ++D PSF+S+    ++  +     ++AHNA FD GF+ AE +R          +
Sbjct: 67  GISDDMVRDAPSFASLAPALFERLD--GKLFVAHNASFDRGFLRAEFERAGLAFNPD--V 122

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + T+ ++R   P  SR+ L++L +RYG+  +  ++H AL D+ L+   + ++
Sbjct: 123 LCTVKLSRALFPRESRHGLDALIERYGLVPA--ARHRALADADLIWQFWRQL 172


>gi|325661635|ref|ZP_08150259.1| hypothetical protein HMPREF0490_00993 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472162|gb|EGC75376.1| hypothetical protein HMPREF0490_00993 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 238

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 96/228 (42%), Gaps = 18/228 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI+      + FD+ETTGL  + D IIEIGAV++ D   T+R F  FL P   + SP   
Sbjct: 1   MIKT----YVAFDLETTGLSEERDSIIEIGAVKVTDGKVTDR-FMEFLKP-AEEISPMIT 54

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++ GIT+E +    +   +  +F  F  E+    + HN  FD  F+     +        
Sbjct: 55  QITGITNEMVAHARNTKEVIDDFMGFCGEE--VLLGHNILFDYKFMKRYACKYQHSF--E 110

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            R IDTL IAR+ H       L +LC  Y I     + H A  D+   + +Y  +     
Sbjct: 111 RRGIDTLKIARKVHKDLESRSLEALCVHYQIKND--AAHRAYHDALATAKLYHCLGHYFE 168

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF----TRITKEELDE 223
           +        E  F++  +K  P     KR              E+L+ 
Sbjct: 169 EKEPNLFVPEPLFYQ-PRKEQPATEKQKRYLEKLCGWHRIAVPEDLEA 215


>gi|46445870|ref|YP_007235.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399511|emb|CAF22960.1| putative DNA polymerase III epsilon chain [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 249

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 96/225 (42%), Gaps = 15/225 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    K + I  D ETTGLD + DRIIE+ AV   D ++     +  + P        ++
Sbjct: 1   MPDIEKNKFICIDCETTGLDPQQDRIIEV-AVMCFDGNQVYAQMESLINPEC-PIPETSI 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLD 119
            +H IT + +KDKP+ + +  +  +  ++     I H   FD+  +    +R      + 
Sbjct: 59  AIHHITQDMVKDKPTINHVLPQILELISDH--IIIGHGVGFDIEILAVAAERHGIPCKIR 116

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +R +DTL +AR    S  N L  L K + I +     H A+ D  +  +V+  +     
Sbjct: 117 KNRFLDTLRMARLYGESPVNSLEYLRKHFNIPLEG--AHRAMSDVIVNKEVFKHL----- 169

Query: 180 QINFGFKTNEDRFFKEEKKTVPN-ISLLKRDKPLFTRITKEELDE 223
             +  ++T E  F    K  + N + L K    L   I  + L  
Sbjct: 170 --SKRYRTTEQLFEVLSKPILMNTMPLGKHKGRLLKEIPLQYLQW 212


>gi|16803938|ref|NP_465423.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes EGD-e]
 gi|224501301|ref|ZP_03669608.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes FSL R2-561]
 gi|16411352|emb|CAC99977.1| dinG [Listeria monocytogenes EGD-e]
          Length = 928

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R IV D+ETTG  + + DRII+  A   ++  K   T+  FL P  +       +L G
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +
Sbjct: 61  ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           DT+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161


>gi|118471901|ref|YP_888535.1| hypothetical protein MSMEG_4259 [Mycobacterium smegmatis str. MC2
           155]
 gi|118173188|gb|ABK74084.1| DNA polymerase III, epsilon subunit [Mycobacterium smegmatis str.
           MC2 155]
          Length = 672

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 96/223 (43%), Gaps = 28/223 (12%)

Query: 9   KIVFDIETTGLDSKN-------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            +V D+ETTG  +K        D I EIGAV++             + P GR   P+ ++
Sbjct: 76  FVVVDLETTGGRAKATAPGGLCDAITEIGAVKVRGGEVLGE-LATLVDP-GRAIPPQIVE 133

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT   ++D P   ++   F +F   + A  +AHNA FD+GF+ A  +R       P 
Sbjct: 134 LTGITTAMVRDAPRIDAVLPMFLEF--ARGAVLVAHNAGFDIGFLRAAAERTQLTWPRP- 190

Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            ++ T+ +ARR           L+ L + +G + +    H AL D+    DV   ++   
Sbjct: 191 PVLCTVKLARRVLTRDEAPSVRLSELARLFGASTT--PTHRALDDARATVDVLHGLIERV 248

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
              N G  T  D      +  +P+ +  +R      R   + L
Sbjct: 249 G--NQGVHTLADL-----RAYLPDTTPAQRR----NRALADGL 280


>gi|47096482|ref|ZP_00234074.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254899404|ref|ZP_05259328.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes J0161]
 gi|254912457|ref|ZP_05262469.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818]
 gi|254936784|ref|ZP_05268481.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900]
 gi|284802344|ref|YP_003414209.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5578]
 gi|284995486|ref|YP_003417254.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5923]
 gi|47015135|gb|EAL06076.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258609379|gb|EEW21987.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900]
 gi|284057906|gb|ADB68847.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5578]
 gi|284060953|gb|ADB71892.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5923]
 gi|293590439|gb|EFF98773.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818]
          Length = 928

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R IV D+ETTG  + + DRII+  A   ++  K   T+  FL P  +       +L G
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +
Sbjct: 61  ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           DT+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161


>gi|269794889|ref|YP_003314344.1| exonuclease, DNA polymerase III subunit epsilon family
           [Sanguibacter keddieii DSM 10542]
 gi|269097074|gb|ACZ21510.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Sanguibacter keddieii DSM 10542]
          Length = 616

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 16/212 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              +++  +V D+ETTG  SK+  I EIGAV++         FQ  + P G        +
Sbjct: 55  TPLSEVTFVVVDLETTGGSSKDAGITEIGAVKVRGGEVIGE-FQSLVNP-GHPVPAFIAR 112

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT   +   PS   +   F +F   +    +AHNA FD+ F+ A  + ++      +
Sbjct: 113 LTGITTLMVSSAPSIELVLPSFLEF--ARGTVLVAHNAPFDISFLKAAARSMDLAW-PGN 169

Query: 122 RIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +++DT+ +ARR   +  +  + L +L   +  TI+    H AL D+    DV   +    
Sbjct: 170 QVLDTVPLARRVVTRDEAPNHKLGTLAALFRATIT--PDHRALSDARATVDVMHAL--FD 225

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
                G    ED        T P  + ++R +
Sbjct: 226 RMAPLGITHLEDLATA----TDPVPADVRRRR 253


>gi|119945580|ref|YP_943260.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
 gi|119864184|gb|ABM03661.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
          Length = 204

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 9/174 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            ++FD ETTGL  K  DR IEIGAV + +     R FQ  + P G + S       GI++
Sbjct: 7   IVIFDFETTGLSPKMGDRPIEIGAVRIKNGLLVER-FQALMHP-GIRISSFIENFTGISN 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L +    + +   F DF    N   +AHNA FD  F++AEL RI++      +I  ++
Sbjct: 65  KMLAEAKPCAEVMGRFCDFIGSDN--LVAHNASFDKRFLDAELHRISRGY--SGQISCSM 120

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +ARR       + L +L     I       H AL DS + ++V++ M+    Q
Sbjct: 121 LLARRVLRDAPNHKLGTLVDYLNIQTEG-VYHRALFDSEMTANVWLAMINKIQQ 173


>gi|266619696|ref|ZP_06112631.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
 gi|288868749|gb|EFD01048.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
          Length = 264

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG+ +  D IIEI A+++ ++ +   TF   + P  R     A K++GITDE
Sbjct: 58  YVVFDLETTGISAVKDDIIEISALKVKNHEQV-ETFSRLVNP-RRPIPAGATKVNGITDE 115

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127
            ++ +P    I  EF DF + +    I HN   FD+ F+N     + +  +  +  IDTL
Sbjct: 116 MVQSEPGLEFILPEFLDFIDGE--ILIGHNIQSFDLLFLNRAADEVCRKAVL-NDFIDTL 172

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +AR   P  SR+ L  L   + I  S    H A  D  +    Y  M
Sbjct: 173 FMARALLPGLSRHRLTDLADYFKI--SSEGAHRAFNDCVMNQICYEHM 218


>gi|224500250|ref|ZP_03668599.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes Finland 1988]
 gi|254831500|ref|ZP_05236155.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 10403S]
          Length = 928

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R IV D+ETTG  + + DRII+  A   ++  K   T+  FL P  +       +L G
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +
Sbjct: 61  ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           DT+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161


>gi|31747869|gb|AAN10194.1| DNA polymerase III epsilon subunit [Candidatus Fritschea bemisiae]
          Length = 249

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 103/235 (43%), Gaps = 17/235 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    K   + FD E+TGLD + DRIIEI A++    +  + + +  + P       E  
Sbjct: 1   MGLLKKEIFVCFDCESTGLDPEKDRIIEIAAIKFSFNAIID-SIEDLINPET-LIPQETT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLD 119
           ++H ITDE ++  P  + +   + DF  E  +  + H   FD+  + AE +R      L 
Sbjct: 59  RIHHITDEMVQKSPKINEVIQSYLDFIGE--SIVVGHGIPFDLALLEAEAKRAGVPSRLL 116

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             R +DTL +AR    S  N L SL K + I     + H A+ D  +  DV+  +     
Sbjct: 117 NQRYLDTLRLARLYGESPTNSLESLRKHFNIQ--GINAHRAMSDVLVNIDVFKYL----- 169

Query: 180 QINFGFKTNEDRFFK-EEKKTVPNISLLKRDKPLFTRITKEELDE--HDKTIQTL 231
             + GF T E+ F K E+   +  + L K     F  I  E L    H    Q L
Sbjct: 170 --SQGFNTVEELFKKLEKPIALRAMPLGKHKGRSFREIPTEYLKWACHQNFDQDL 222


>gi|288819191|ref|YP_003433539.1| DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|46849522|dbj|BAD17850.1| putative DNA polymerase III epsilon subunit [Hydrogenobacter
           thermophilus]
 gi|288788591|dbj|BAI70338.1| DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|308752773|gb|ADO46256.1| DNA polymerase III, epsilon subunit [Hydrogenobacter thermophilus
           TK-6]
          Length = 191

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIETTG D ++  IIEI  V  ++       F   + P G       +KL GIT+ 
Sbjct: 10  FVSIDIETTGFDEESSDIIEIACVR-VEGCIITDRFSTLVNP-GYLLPDRIVKLTGITNA 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  KP+   +   F  F    ++  + H+ + D+ FI+   + +          I TL+
Sbjct: 68  MIVGKPNIYEVLPHFLRFVG--DSIIVGHHVEKDMAFIDKAYRVLYGKKF-KHPHICTLN 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   P   R  L  L   + I    R  H AL D+   + ++I+++
Sbjct: 125 LARNILPDLKRYSLKDLADHFNIRY--RRLHRALDDAETTAYLFIELL 170


>gi|113970108|ref|YP_733901.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-4]
 gi|113884792|gb|ABI38844.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4]
          Length = 229

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 16/208 (7%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL   +  R IEIGAV +     T R F   + P G + +       GI+++
Sbjct: 31  VVLDFETSGLSPNQGARAIEIGAVLIEQGQITAR-FSELMNP-GFRINSFIEDYTGISNQ 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L      + + + F  F  +     +AHNA FD  F++AE  +I      P +   +L 
Sbjct: 89  MLAHAAPCAEVMARFAAFIGKH--HLVAHNAAFDQRFLDAEFAQIGHHY--PGQFGCSLL 144

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR +P +  + L +L +   +  S  + H AL D+ +   ++++M+    Q   G+  
Sbjct: 145 LARRLYPEAINHQLATLVRHKQLP-SDGTFHRALADAEMTGHLWLRMLADLKQ---GYAI 200

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            E  F   +K     ++  K + P F R
Sbjct: 201 TEPPFSLMQKI----MTKTKAEVPKFLR 224


>gi|90415683|ref|ZP_01223617.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90333006|gb|EAS48176.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 528

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 88/167 (52%), Gaps = 9/167 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++ D+ETTG  + + RIIEIG + +++  K    +Q F+ P      P   KL GI  
Sbjct: 23  KMVLLDLETTGGKATHHRIIEIGLL-VIEQGKVLERWQSFVDPETV-LPPFIQKLTGIAP 80

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L+  P FS +      + N++    +AHNA+FD GF+  E QRI       ++ + ++
Sbjct: 81  SMLRGAPLFSEVAETLLTYLNDR--TLVAHNARFDYGFLKNEFQRIGISY--NAKPLCSV 136

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             +R  +P   R+ L+ + KR+ + I +R  H AL D+ ++   ++K
Sbjct: 137 KFSRSLYPQFKRHGLDQIIKRFQLPIENR--HRALDDAEMIQRFFLK 181


>gi|158313649|ref|YP_001506157.1| hypothetical protein Franean1_1813 [Frankia sp. EAN1pec]
 gi|158109054|gb|ABW11251.1| DNA polymerase III, epsilon subunit [Frankia sp. EAN1pec]
          Length = 603

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 80/210 (38%), Gaps = 17/210 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + +  +V D+ETTG       I EIGAV +             + P+          L 
Sbjct: 24  LSDLTFVVVDLETTGGSPATSEITEIGAVRVRGGQILGE-MSSLVRPS-APIPAFISVLT 81

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   +   P    +   F +F   + A  +AHNA FD+GF+ A        P      
Sbjct: 82  GITGAMVATAPGIGEVVPTFLEF--ARGAVLVAHNAPFDLGFLRAAATACGY-PAPAWEH 138

Query: 124 IDTLSIARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DT+ IARR           L+SL   +G   + +  H AL D+    DV   +      
Sbjct: 139 LDTVRIARRVISRDETRDCRLSSLAALFG--SATQPNHRALADARATVDVLHGL--FERL 194

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
            N G  T ED       +    +S  +R K
Sbjct: 195 GNLGVTTIEDLH-----EYSARVSPAQRRK 219


>gi|254827216|ref|ZP_05231903.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165]
 gi|258599599|gb|EEW12924.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165]
          Length = 928

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R IV D+ETTG  + + DRII+  A   ++  K   T+  FL P  +       +L G
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +
Sbjct: 61  ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           DT+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161


>gi|46908132|ref|YP_014521.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes serotype 4b str. F2365]
 gi|46881402|gb|AAT04698.1| ATP-dependent helicase DinG [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 928

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R IV D+ETTG  + + DRII+  A   ++  K   T+  FL P  +       +L G
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +
Sbjct: 61  ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           DT+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161


>gi|229061173|ref|ZP_04198523.1| DNA polymerase III alpha subunit [Bacillus cereus AH603]
 gi|228718044|gb|EEL69684.1| DNA polymerase III alpha subunit [Bacillus cereus AH603]
          Length = 318

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 19/208 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   + +IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 127

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A++       + L +L +  GI +S    H A  D    + VY K              
Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQKC----------AAV 174

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            E+   K  K+ +   ++ +  K +  R
Sbjct: 175 EEEGKRKANKEVLDETAVFEAVKEMLVR 202


>gi|254852803|ref|ZP_05242151.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503]
 gi|300763791|ref|ZP_07073788.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017]
 gi|258606130|gb|EEW18738.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503]
 gi|300515527|gb|EFK42577.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017]
          Length = 928

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R IV D+ETTG  + + DRII+  A   ++  K   T+  FL P  +       +L G
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +
Sbjct: 61  ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           DT+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161


>gi|15606258|ref|NP_213636.1| DNA polymerase III epsilon subunit [Aquifex aeolicus VF5]
 gi|6014995|sp|O67074|DPO3E_AQUAE RecName: Full=DNA polymerase III subunit epsilon
 gi|2983450|gb|AAC07031.1| DNA polymerase III epsilon subunit [Aquifex aeolicus VF5]
          Length = 202

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 15/179 (8%)

Query: 6   KMR-------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           KMR        +V D+E TG D +   +I++ AV  ++       F   + P G      
Sbjct: 9   KMRDNLLDGTFVVIDLEATGFDVEKSEVIDLAAVR-VEGGIITEKFSTLVYP-GYFIPER 66

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             KL GIT+  L  +P+   +  EF +F  +     + H  + D+ FIN   ++      
Sbjct: 67  IKKLTGITNAMLVGQPTIEEVLPEFLEFVGDN--IVVGHFVEQDIKFINKYTKQYRGKKF 124

Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             +  + TL +AR+  P   +  L  + + +G        H AL D+ L ++++IK++ 
Sbjct: 125 -RNPSLCTLKLARKVFPGLKKYSLKEIAENFG--FETNGVHRALKDATLTAEIFIKILE 180


>gi|226224503|ref|YP_002758610.1| ATP-dependent helicase [Listeria monocytogenes Clip81459]
 gi|254825606|ref|ZP_05230607.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194]
 gi|225876965|emb|CAS05674.1| Putative ATP-dependent helicase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|293594849|gb|EFG02610.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194]
 gi|328466248|gb|EGF37405.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 1816]
          Length = 928

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R IV D+ETTG  + + DRII+  A   ++  K   T+  FL P  +       +L G
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +
Sbjct: 61  ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           DT+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161


>gi|300856800|ref|YP_003781784.1| putative DNA polymerase III [Clostridium ljungdahlii DSM 13528]
 gi|300436915|gb|ADK16682.1| predicted DNA polymerase III [Clostridium ljungdahlii DSM 13528]
          Length = 362

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 93/179 (51%), Gaps = 11/179 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD +ND+I+EIGAV+  D  +T++ F   + P+      +  K++GI D 
Sbjct: 61  FVALDFETTGLDYRNDKIVEIGAVKYKDEKETDK-FHFLINPHIH-IPEKITKINGIEDS 118

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD PS + +  +  DF    N   + HNA+FD+ F++  +          + +IDTLS
Sbjct: 119 MVKDSPSINEVIPKLIDFMG--NLPIVVHNARFDIDFLDENMSDNKYR---GNSVIDTLS 173

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           I+R+   +   + L ++     I +   + H A+ D+ + +++Y+K    G  I   + 
Sbjct: 174 ISRKMFENIDNHRLQTIKDYLKIDL---NSHRAIDDAKVAAEIYLKYCREGYPIKKDYD 229


>gi|331084769|ref|ZP_08333857.1| hypothetical protein HMPREF0987_00160 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410863|gb|EGG90285.1| hypothetical protein HMPREF0987_00160 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 238

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 97/228 (42%), Gaps = 18/228 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI+      + FD+ETTGL  + D IIEIGAV++ D   T+R F  FL P   + SP   
Sbjct: 1   MIKT----YVAFDLETTGLSEERDSIIEIGAVKVTDGKVTDR-FMEFLKP-AEEISPMIT 54

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++ GIT+E +    +  ++  +F  F  E+    + HN  FD  F+     +        
Sbjct: 55  QITGITNEMVAHARNTKAVIDDFMGFCGEE--VLLGHNILFDYKFMKRYACKYQHSF--E 110

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            R IDTL IAR+ H       L +LC  Y I     + H A  D+   + +Y  +     
Sbjct: 111 RRGIDTLKIARKVHKDLESRSLEALCAHYQIKND--AAHRAYHDALATAKLYHCLGHYFE 168

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF----TRITKEELDE 223
           +        E  F++  +K  P     KR              E+L+ 
Sbjct: 169 EKEPNLFVPEPLFYQ-PRKEQPATEKQKRYLEKLCGWHRIAVPEDLEA 215


>gi|163784927|ref|ZP_02179686.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879804|gb|EDP73549.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 206

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 7/176 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N+   ++ D+ETTGL + N+ +IE+ A++       ++       P       + + 
Sbjct: 5   LTVNEATFVIIDLETTGLSASNNSVIEVAAIKYQSGMIIDQ-LHHLTKPRENFIPSKVIN 63

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT+  + DKP F  I+ E ++F   +++  +AHNAKFD+ F++   + + K+ L   
Sbjct: 64  LTGITNAMVIDKPYFEDIYPEVYNFL--KDSIVVAHNAKFDISFLSEVHKIVFKNNLRLH 121

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             I T ++ARR  P   +  L+SL    GI    + KH AL D+      +  M+ 
Sbjct: 122 -YICTDNLARRIFPEIQKKSLSSLTNYLGINF--KQKHRALSDAQATLQAFQTMLE 174


>gi|320449814|ref|YP_004201910.1| DNA polymerase III subunit epsilon [Thermus scotoductus SA-01]
 gi|320149983|gb|ADW21361.1| DNA polymerase III, subunit epsilon [Thermus scotoductus SA-01]
          Length = 637

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 14/169 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
              FD+ETTGLD + D II +GAV +L  +   +  F+  + P GR     + ++HG+T 
Sbjct: 453 YTAFDLETTGLDPEKDAIIALGAVHILGKTVLRHEVFEALVNP-GRPIPKASTEVHGLTW 511

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LK+KP    +   F  F   ++   +AHN  FD+ F+    +R+    +D   ++DTL
Sbjct: 512 EMLKEKPKLEEVLPGFRLFL--EDTVLLAHNGAFDMAFL----RRVG---IDQPPLVDTL 562

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++    P  + + L +L +R+G+ +  R  H AL D+ + ++V+  M+
Sbjct: 563 LLSYLLFPDLQDHRLETLAERFGVPVIGR--HTALGDALMTAEVFAGMV 609


>gi|310828723|ref|YP_003961080.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612]
 gi|308740457|gb|ADO38117.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612]
          Length = 461

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 8/183 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTGLD  N+ IIEIGA+++ D +  + +F+ F+ P       +   + GIT+ 
Sbjct: 146 YVMVDVETTGLDPSNNEIIEIGALKITDGNVID-SFKTFVKP-INSIPSKITSITGITNN 203

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRIIDTL 127
            + D PS  ++  EF  F ++     + +N  FD+ F++    +            ID L
Sbjct: 204 MVADAPSIKTVLMEFKSFLSDN--YIVGYNVLFDIKFLHDSYYKNFGNCDWLSHDYIDVL 261

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
              R+   S   + L ++     I +  +  H AL D +   + Y        + N  F+
Sbjct: 262 RFCRKYFKSAPNHKLTTMIDYLNIDV--KEHHRALADCYATLECYNNCKERALKENIRFE 319

Query: 187 TNE 189
            N 
Sbjct: 320 LNS 322


>gi|89901349|ref|YP_523820.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
 gi|89346086|gb|ABD70289.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
          Length = 476

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 86/167 (51%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG +  +DRI EI AV + +  +  R +   + P G   SP    L GI++ 
Sbjct: 5   YVLLDLETTGGNPVHDRITEIAAVRIENGQEVAR-WSTLVNP-GCSISPFIQHLTGISNA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F ++        +   A  +AHN +FD GF+  EL R+  D     + + T+ 
Sbjct: 63  MVRGAPGFETVAQHLLALLD--GAVLVAHNVRFDHGFLLNELARL--DVALRVKTLCTVR 118

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++R  +P  + + L+++ +R+GI    R  H A+ D  ++   ++++
Sbjct: 119 LSRLLYPQHKGHGLDAIMQRHGIRTLER--HRAMGDVEVM-QAWLQI 162


>gi|258511618|ref|YP_003185052.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478344|gb|ACV58663.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 952

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 8/180 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I+ D+ETTGLD +   I+EIGA+ +    +   TF   + P  R    E  +L G++
Sbjct: 1   MEWIIVDLETTGLDPERAEILEIGALRVR-GGEIVDTFHTLVRPE-RPIPDEITRLTGLS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  +   PS       F  F          H+  F+  F+   + R    PL P   + T
Sbjct: 59  DADVAGAPSEREALMRFAGFAGH--TPMAGHHWVFERSFLLHRVARYGL-PLQPGDGLCT 115

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           LS+AR   P    + L  L +R  + +     H AL D+     + +++     ++  G 
Sbjct: 116 LSLARILAPRLMSHRLEYLARR--LRLRAEVSHRALADARTAHQLLMRLEEKARRLPSGV 173


>gi|254931930|ref|ZP_05265289.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262]
 gi|293583482|gb|EFF95514.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262]
          Length = 928

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R IV D+ETTG  + + DRII+  A   ++  K   T+  FL P  +       +L G
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +
Sbjct: 61  ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           DT+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161


>gi|225180860|ref|ZP_03734308.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT
           1]
 gi|225168341|gb|EEG77144.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT
           1]
          Length = 269

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 9/168 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGI 65
           R I+FD ETTG    + D II I AV + +     ++ F   + P+ R        L GI
Sbjct: 77  RYIIFDTETTGFYPYQGDEIINIAAVVIENGEIKEDQIFDELVNPH-RSIPQAVCDLTGI 135

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+ + DK    S+ S+F DF    ++  +AHNA+FD+ F+N +L    +  +  + +ID
Sbjct: 136 TDDMVADKCGICSVLSDFLDFIG--DSVLVAHNAEFDLAFLNIKLNWYTQTEI-YNPVID 192

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           T  + R  +P    +DL++L + + +    R +H AL DS + +++++
Sbjct: 193 TYKLGRALYPQLLSHDLDTLIRHHRVK--ERPRHTALGDSLMTAEIFL 238


>gi|163751714|ref|ZP_02158932.1| putative DNA polymerase III [Shewanella benthica KT99]
 gi|161328366|gb|EDP99525.1| putative DNA polymerase III [Shewanella benthica KT99]
          Length = 206

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 9/177 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M        I+ D ETTGL   + DR IEIGAV + D      TFQ  + P G + S   
Sbjct: 1   MTTPAADSVIILDFETTGLSPNQGDRAIEIGAVRIQDG-IVVDTFQELMNP-GFRVSGFI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
               GI++  L +      + + F DF    N   +AHNA FD  F++AEL  IN     
Sbjct: 59  AGYTGISNAMLANAAPCEEVMARFADFIGNHN--LVAHNASFDQRFLDAELDAINLSY-- 114

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 ++ IARR +     + L  L +   I       H AL DS + + +++ M+
Sbjct: 115 GGEFACSMLIARRLYQDAPNHKLGGLVEYKQIENDG-VFHRALADSEMTAKLWLLML 170


>gi|332983437|ref|YP_004464878.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1
           BON]
 gi|332701115|gb|AEE98056.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1
           BON]
          Length = 296

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGL+   D+I+EI AV+   Y +   ++   + P G      A K++ ITDE
Sbjct: 122 FVAIDLETTGLNPAIDKIVEIAAVKFK-YGEIIDSYTTLINP-GIHIPSSASKINHITDE 179

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  S +     +F    ++  + HNA FD+ F+     ++  D  +P   IDTL 
Sbjct: 180 TVHGAPDLSEVLPNLLNFIG--DSILVMHNASFDLKFLKYHAAKLGYDISNPF--IDTLP 235

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             ++         L ++     I+ +  + H A  D+ +   V IK +
Sbjct: 236 TCKKLFTDFENYQLATVANYLKISTAD-TFHRACNDAEICGPVLIKCI 282


>gi|117928176|ref|YP_872727.1| hypothetical protein Acel_0968 [Acidothermus cellulolyticus 11B]
 gi|117648639|gb|ABK52741.1| DNA polymerase III, epsilon subunit [Acidothermus cellulolyticus
           11B]
          Length = 566

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 84/231 (36%), Gaps = 23/231 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
                +  +V D+ETTG       I E+ AV++          Q  + P GR   P    
Sbjct: 19  TPLRDVTFVVVDLETTGGAPGTGAITELAAVKVRGGEVLGE-LQTLVNP-GRPIPPFITV 76

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +   P   ++   F +F     +  +AHNA FDVGF+ A       D     
Sbjct: 77  LTGITDAMVAPAPPIDAVLPTFLEF--ATGSVLVAHNAPFDVGFLRAACAAAGYDW-PEF 133

Query: 122 RIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            ++DT  +ARR   +  +    L +L + +    +    H AL D +   DV   ++   
Sbjct: 134 EVLDTARLARRVLTREEAPNCTLATLARVFRAKTT--PNHRALADVYATIDVLHGLLERL 191

Query: 179 SQINFGFKTN-------------EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                G   +             + R   E     P + L +  +     +
Sbjct: 192 GSFGVGSLADVRTFSAKVTATQRQKRHLAERLPHAPGVYLFRDRQGRVLYV 242


>gi|229134413|ref|ZP_04263226.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196]
 gi|228649034|gb|EEL05056.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196]
          Length = 318

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 19/208 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   + +IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 127

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A++       + L +L +  GI +S    H A  D    + VY K              
Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQKC----------AAV 174

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            E+   K  K+ +   ++ +  K +  R
Sbjct: 175 EEEGKRKANKEVLDETAVFEAVKEMLVR 202


>gi|238062933|ref|ZP_04607642.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149]
 gi|237884744|gb|EEP73572.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149]
          Length = 286

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           ++  +V D+ETTGL S +DRI+EI  V  ++  +    +   + P GR   P    +H I
Sbjct: 34  EVPFVVVDVETTGLSSTSDRIVEIALVR-IEGGRVVDEWATLVDP-GRDPDPTF--VHHI 89

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E L   P+F+ +  E     +   A  +AHNA+F+ GFI  E  R+      P   + 
Sbjct: 90  TAEMLSGAPTFADVAGEILSRLD--GAVVVAHNARFEEGFIAQEFARVGISTA-PLPAVC 146

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           TL +AR+   +    L S C  YGI +     H AL D+   + + 
Sbjct: 147 TLRLARQVLAAPNFQLVSCCTVYGIEL--HDAHTALGDTRATAQLL 190


>gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
 gi|297147193|gb|EDY59400.2| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
          Length = 327

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 11/198 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L    +    +   + P      P  + +HG+T +
Sbjct: 23  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPER---DPGPVWIHGLTSD 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  EF    + +    +AHNA FD   I  E  R  +     S+ + T+ 
Sbjct: 79  ALEGAPLFQDIADEFSSRLDGR--VLVAHNAVFDWQMIAREYARAGRVA-PVSQRLCTIV 135

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +++    P   + L SL   +G+    +  H AL D+ +L++ +   +   +  +     
Sbjct: 136 LSKELGLPLPNHKLESLAAHFGVV--QQRAHHALDDARVLAEAFRPSLRAAAARSVRLPL 193

Query: 188 NEDRFFKE-EKKTVPNIS 204
           +E R   E   + VP  S
Sbjct: 194 HECRPLTEWTDRAVPRQS 211


>gi|320353730|ref|YP_004195069.1| DNA polymerase III, subunit epsilon [Desulfobulbus propionicus DSM
           2032]
 gi|320122232|gb|ADW17778.1| DNA polymerase III, epsilon subunit [Desulfobulbus propionicus DSM
           2032]
          Length = 218

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTG    + DR IE+GAV  +++ +    FQ  + P G   S    +L GI+++
Sbjct: 7   IVLDFETTGHSPNRGDRPIEVGAVR-IEHDRIVDRFQALMNP-GFTISWFIERLTGISND 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P    + + F D+    +   +AHNA FD  F++AEL  I +     + +  T+ 
Sbjct: 65  LIAHAPPCEEVMNRFADWMG--DLPLVAHNAGFDRAFLDAELALIGRH--QSNPMACTVL 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +RR  P S  + L +L    GI  +  + H AL D+ +   V+I M 
Sbjct: 121 ASRRLFPESPNHKLATLVNHLGI-FTDGTFHRALADAEMTGHVWIAMT 167


>gi|56420711|ref|YP_148029.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus kaustophilus HTA426]
 gi|56380553|dbj|BAD76461.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426]
          Length = 909

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 15/218 (6%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++ D+ETTG    K DRII++G   + D     R F  F  P  +       +L  I 
Sbjct: 4   RFVIIDLETTGNGPKKGDRIIQLGMAVVEDGLIVER-FASFFNPE-QPIPLFIQQLTNIN 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++  P F+    E         A ++AHN  FD+ F+ AEL+R    P      IDT
Sbjct: 62  EEMVEGAPLFADKAGEIAALM--HGAYFVAHNVDFDLPFLQAELERAGWPPFS-GPTIDT 118

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           + +AR   P+     L  L ++ G  + H   H A  D+ + + ++I ++   S++    
Sbjct: 119 VELARIVLPTAESYKLGDLARQLG--LHHNRPHQADSDAEVTAKLFIALLKRLSRLPL-M 175

Query: 186 KTNEDRFFKEEKKT-----VPNISLLKRDKPLFTRITK 218
              + R      K+     +  +   KR+K    R   
Sbjct: 176 TLEQLRGLARHLKSDIYLLLDAVIAKKRNKAPADRAVA 213


>gi|288922213|ref|ZP_06416412.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f]
 gi|288346447|gb|EFC80777.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f]
          Length = 565

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 91/236 (38%), Gaps = 29/236 (12%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + +  +V D+ETTG       I EIGAV++             +        P    L 
Sbjct: 24  LSDLTFVVVDLETTGGSPATSEITEIGAVKVRGGQVLGE-MSSLVR-ASTPIPPVVSVLT 81

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD  L   P+   +   F +F   + A  +AHNA FD+GF+ A  Q     P+     
Sbjct: 82  GITDSMLATAPTLDEVVPTFLEF--SRGAVLVAHNAAFDLGFLRAAAQACGY-PVPAWEH 138

Query: 124 IDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DT+ IARR   +  +    L SL   +G        H AL D+     V   +      
Sbjct: 139 LDTVLIARRVVTRDEAPNCRLASLATLFGSPTE--PNHRALADARATVAVLHGL--FERL 194

Query: 181 INFGFKTNED---------------RFFKEEKKTVPNISLLK--RDKPLFTRITKE 219
            N G  T ED               R   ++  T P + + +   D+PL+   ++ 
Sbjct: 195 GNLGVTTLEDVREYSARVSPAQRRKRHLADDLPTGPGVYVFRDGADRPLYVGTSRS 250


>gi|149915092|ref|ZP_01903620.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. AzwK-3b]
 gi|149810813|gb|EDM70652.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. AzwK-3b]
          Length = 481

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 90/169 (53%), Gaps = 7/169 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            + FD ETTGL ++ D ++++GAV +L+       T   ++ P GR   P + ++H +TD
Sbjct: 277 FVAFDTETTGLSAQTDDVVQLGAVRVLNGRVVPGETLDTYVNP-GRPIPPASTEIHRVTD 335

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++    F ++   F  F   ++A  +AHNA FD+ F++    R+  +   P  ++DT+
Sbjct: 336 GHVRGASDFVTVGRNFHHF--ARDAVLVAHNAPFDLAFLHRFADRMGVEWTHP--VLDTV 391

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++     +  ++ L++LC R  ITI    +H A  D+   ++  ++++
Sbjct: 392 LLSAVVFGTTEQHSLDALCDRLAITIPDNLRHTAFGDAQATAEALVRLI 440


>gi|229168326|ref|ZP_04296051.1| DNA polymerase III alpha subunit [Bacillus cereus AH621]
 gi|228615152|gb|EEK72252.1| DNA polymerase III alpha subunit [Bacillus cereus AH621]
          Length = 318

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 19/208 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   + +IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 127

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A++       + L +L +  GI +S    H A  D    + VY K              
Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQKC----------AAV 174

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            E+   K  K+ +   ++ +  K +  R
Sbjct: 175 EEEGKRKANKEVLDETAVFEAVKEMLVR 202


>gi|116873334|ref|YP_850115.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742212|emb|CAK21336.1| ATP-dependent helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 928

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R IV D+ETTG  + + DRII+  A   ++  K   T+  FL P  +       +L G
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYSTFLNPE-KPIPAFIQELTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I  + +K+ P F  +          ++  ++AHN  FD  F+  E+ R     L   + +
Sbjct: 61  IAPKDVKNAPLFEDVAPIIASLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           DT+ +AR  +P      L  L   +G  + H   H A  D+ + +D
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 161


>gi|50365104|ref|YP_053529.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
 gi|50363660|gb|AAT75645.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
          Length = 1493

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 97/178 (54%), Gaps = 11/178 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEA 59
           IR++KM  +VFD+ETTGL  + + IIE GAV       T +T  +     P  +      
Sbjct: 435 IRESKM--VVFDLETTGLSPEFNEIIEFGAVVF--DPVTGKTTKYDYLFKPK-QPLKQFT 489

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + L  IT E L+DK +    F + ++    +++  +AHNA FD  F+N+  +R+    L 
Sbjct: 490 IDLTNITPEMLEDKKNIDDDFDKIYELI--KDSILVAHNANFDFNFLNSLSKRLGYGDL- 546

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            + +IDTL+++R   P+ + + L ++CK++GI       H    D+ +L+D++ K++ 
Sbjct: 547 QNTVIDTLTLSRLVRPALKSHRLGAVCKKFGILYDEHVAHRGDYDADVLNDLFFKIIA 604


>gi|34496475|ref|NP_900690.1| DNA-directed DNA polymerase III subunit epsilon [Chromobacterium
           violaceum ATCC 12472]
 gi|34102328|gb|AAQ58694.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Chromobacterium violaceum ATCC 12472]
          Length = 481

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/196 (28%), Positives = 94/196 (47%), Gaps = 13/196 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            + D+ETTG +   DRI E+G V L+D  +  R     + P G+   P    + GI++E 
Sbjct: 7   AIIDLETTGGNIARDRITEVGMV-LIDGERVER-LSWLVNP-GQPIPPFIENMTGISNEM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P FS+   E  D    Q    +AHNA+FD GF+  E +R        +R + T+ +
Sbjct: 64  VAGAPPFSAQADELLDRL--QGRLLLAHNARFDYGFLKNEFRRHGLRF--QARALCTVKL 119

Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +RR +P   ++ L+SL  R+GI +  R  H AL D+     VY  + +  +++      +
Sbjct: 120 SRRLYPQHFKHSLDSLIARHGIDMPER--HRALADAEA---VYRFIRIAEAELGEDRVAH 174

Query: 189 EDRFFKEEKKTVPNIS 204
           E      +   + ++ 
Sbjct: 175 EAAQLLSQPAELSSLP 190


>gi|152975987|ref|YP_001375504.1| DNA polymerase III subunit epsilon [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024739|gb|ABS22509.1| DNA polymerase III, epsilon subunit [Bacillus cytotoxicus NVH
           391-98]
          Length = 299

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 9/165 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG    NDRII++ AV   ++   ++ F  F+ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFHPYNDRIIQVAAVRYRNHELADQ-FVSFVNPE-RSIPSRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F    N   +AHNA FD+ F+ + + R        +++IDT+ 
Sbjct: 68  RVSDAPTVQEVLPLFLAFLG--NDTIVAHNASFDMRFLKSNMSRFQLGE-PNNKVIDTVL 124

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +A++    + N  L +L +  GI +S    H AL D    + VY 
Sbjct: 125 LAKKYMKHAPNFKLETLKRMLGIRLS---SHNALDDCITCAAVYQ 166


>gi|307717390|gb|ADN88748.1| DNA polymerase III [Listeria welshimeri]
          Length = 231

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 11/195 (5%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +   F ++  +     +AHNA FD+GFIN   +++  +  D + ++DTL +AR 
Sbjct: 59  SDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAD-NAVVDTLELARF 115

Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ---INFGFKTN 188
            +P    + LN+L K++ I +     H A+ D+   + +  K++    +   INF    N
Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHDINFHDSLN 173

Query: 189 EDRFFKEEKKTVPNI 203
           +     E  K     
Sbjct: 174 DYMGEGEAYKRARPF 188


>gi|325843612|ref|ZP_08168008.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sp. HGF1]
 gi|325489298|gb|EGC91675.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sp. HGF1]
          Length = 1528

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 31/220 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  N    +V+D+ETTG  +  D IIEI AV++ + +  +  F  F  P+ RK S + ++
Sbjct: 426 IPLNDATYVVYDVETTGFSTNYDVIIEIAAVKIKNGTIIDE-FSDFANPH-RKLSLKTIE 483

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  I    + + P    +   F ++   ++   +AHNA FD+G +    +R N   +  +
Sbjct: 484 LTHILQSDVDNAPELEDVMKRFKEW--SEDCILVAHNAAFDMGHLEQTYKRFNLG-VCDN 540

Query: 122 RIIDTLSIARRKH----------------------PSSRNDLNSLCKRYGITISHRSKHG 159
            ++DTL++AR  +                         R +L +L K + + ++    H 
Sbjct: 541 PVLDTLALARVLYHHQYGVYWNYATDATIDEKFKRKMKRFNLKALSKFFKVDLTQH--HR 598

Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT 199
           A+ D+      +I M+     +    KT+++     +K+T
Sbjct: 599 AIYDARATGQAFILMLR--DILKLDIKTHDEVNQLVDKET 636


>gi|28210814|ref|NP_781758.1| DNA polymerase III subunit epsilon [Clostridium tetani E88]
 gi|28203252|gb|AAO35695.1| DNA polymerase III alpha subunit [Clostridium tetani E88]
          Length = 380

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 99/245 (40%), Gaps = 36/245 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGL    D+IIEI A++        + +   + P        A +++ IT+ 
Sbjct: 84  FVVIDLETTGLYPVTDKIIEITAIKYKSGQIVEK-YNTLINPKI-NIPKRATEINNITNN 141

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    +  E   F  E     +AHNA FD+ F+NA L  IN++    +  IDTL 
Sbjct: 142 MVKDSPVIEDVLPELLKFIKE--YPLVAHNASFDIKFLNANLALINREI--KNVAIDTLQ 197

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R  +     + L ++ +   I  S  + H AL D    +++Y+      +     F  
Sbjct: 198 LSRAMYTFLPNHKLTTIKEHLCI--SEDNSHRALPDCITTAEIYLDYCYKANNNLKEFNE 255

Query: 188 NEDRFFKEEKKTVP---------------------------NISLLKRDKPLFTRITKEE 220
            E   FK  K  +                             I +  R +   T I  EE
Sbjct: 256 LEKACFKVIKDMLNKNNRDTEFLKLKHTGNYTDIAYFYPLVRIKVGDRKQYFLTNIPLEE 315

Query: 221 LDEHD 225
           L EH+
Sbjct: 316 LKEHE 320


>gi|94312850|ref|YP_586059.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34]
 gi|93356702|gb|ABF10790.1| DNA polymerase III, epsilon subunit [Cupriavidus metallidurans
           CH34]
          Length = 530

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG D++ DRI EIG VE+       + +   + P      P    L GITDE
Sbjct: 35  IVFVDLETTGADAQRDRITEIGVVEVGPDGI--QEWDTLVDP-LTSIPPFVQGLTGITDE 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ +P+F+ I     +    Q   ++AHNA+FD GF+  E +R        + ++ TL 
Sbjct: 92  MVRGQPTFALIAEALAE--KLQGRLFVAHNARFDYGFLKNEFRRAGVTF--RADVLCTLR 147

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++R   PS  R+ L++L  R+G+T   R  H AL D+ LL   + K+
Sbjct: 148 LSRSLFPSVERHGLDALIARFGLTPKGR--HRALADAELLWQFWQKI 192


>gi|260655785|ref|ZP_05861254.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
 gi|260629401|gb|EEX47595.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
          Length = 208

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 8/174 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIETTGL  ++  IIE+GA++ +   K    F   + P G         +HGITD+
Sbjct: 12  YVALDIETTGLSPRSCSIIEVGALKFVPGKK-GEEFSSLIDP-GCPIPASGRSIHGITDD 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P    + +   DF     A  + HNA FD+ FI   L ++ +       + DTL 
Sbjct: 70  MVAGQPRVEEVIAGLLDFVGP--APLVLHNAPFDLSFIAPVLDKLGRKW-QAMTVFDTLP 126

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++R   P  R   L SL   +         H AL D      ++ + +    Q+
Sbjct: 127 LSRVAFPGLRSYSLESLSDFF--EFKEGVHHRALCDCWYTQQLFTRFLEKVDQL 178


>gi|224826734|ref|ZP_03699834.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224600954|gb|EEG07137.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 707

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 12/204 (5%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALK 61
            +++   VFD ETTGL+    D II+IGA  +++        F+  + P  R    +++K
Sbjct: 512 LSELSYTVFDTETTGLEPAAGDEIIQIGATRIVNRRLLQHEGFEQLIDP-RRPLPEDSVK 570

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT E L  +P   ++   F  +    +   +AHNA FD+ F+  +          P 
Sbjct: 571 IHGITPEMLAGQPPLDTVLPAFRAYCA--DTVLVAHNAAFDMRFLQLKEASTGVRFDQP- 627

Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DTL ++   HP    + L ++ +R G+TI  R  H A+ D+ +  +V++KM+   ++
Sbjct: 628 -VLDTLLLSAVLHPNQESHRLEAIAERLGVTIIGR--HTAMGDAIVTGEVFLKMIPLLAE 684

Query: 181 INFGFKTNEDRFFKEEKKTVPNIS 204
              G +T  +     E+     I 
Sbjct: 685 --KGIRTLREAREASERTYYARIR 706


>gi|294628658|ref|ZP_06707218.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
 gi|292831991|gb|EFF90340.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
          Length = 328

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 11/196 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L    +    +   + P      P  + +HG+T E
Sbjct: 23  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPER---DPGPVWIHGLTSE 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ I  EF     ++    +AHNA FD   I  E  R  ++     R + T++
Sbjct: 79  ALEGAPLFTDIAEEFAARLADR--VLVAHNAVFDWQMIAREYARARREAPVRQR-LCTIA 135

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +++    P   + L SL   +G+    R  H AL D+ +L++ +   +   +        
Sbjct: 136 LSKELGLPLPNHKLESLAAHFGVV--QRRAHHALDDARVLAEAFRPSLWAAAAGGVRLPL 193

Query: 188 NEDRFFKE-EKKTVPN 202
            E R   E   + VP 
Sbjct: 194 LECRPLTEWSDRPVPR 209


>gi|313124719|ref|YP_004034978.1| DNA polymerase iii polc-type [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312281282|gb|ADQ62001.1| DNA polymerase III PolC-type [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 298

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 13/179 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTGL +  D +IEIG + + +   T+R ++  + P   +       L GIT+E
Sbjct: 12  YCVLDTETTGLSAYYDEVIEIGILRVRNGEITDR-YEQLIKPEN-EIDGFITSLTGITNE 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + DKP+   + S+   F        + HN  FDV F+ A            +  +DT+ 
Sbjct: 70  MVADKPAIEDVKSDVLAFLGSD--IIVGHNTSFDVRFLAA-----GFHEDIANEYMDTMQ 122

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            AR+ +P  + + L+ L +   +T +    H AL D     ++Y  M     +   G K
Sbjct: 123 FARKLYPDLTHHRLSDLSEYLYLTNNE---HRALADCVTTEELYEAMKTEMIRKGLGIK 178


>gi|307717344|gb|ADN88725.1| DNA polymerase III [Listeria innocua]
 gi|307717350|gb|ADN88728.1| DNA polymerase III [Listeria innocua]
 gi|307717352|gb|ADN88729.1| DNA polymerase III [Listeria innocua]
 gi|307717386|gb|ADN88746.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 92/171 (53%), Gaps = 8/171 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +  +F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL +AR 
Sbjct: 59  SDPIDVVLKQFREWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAN-NAVVDTLELARF 115

Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +P    + LN+L K++ I +     H A+ D+   + +  K++    +++
Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMH 164


>gi|293374694|ref|ZP_06621002.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sanguinis PC909]
 gi|292646608|gb|EFF64610.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sanguinis PC909]
          Length = 1528

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 31/220 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  N    +V+D+ETTG  +  D IIEI AV++ + +  +  F  F  P+ RK S + ++
Sbjct: 426 IPLNDATYVVYDVETTGFSTNYDVIIEIAAVKIKNGTIIDE-FSDFANPH-RKLSLKTIE 483

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  I    + + P    +   F ++   ++   +AHNA FD+G +    +R N   +  +
Sbjct: 484 LTHILQSDVDNAPELEDVMKRFKEW--SEDCVLVAHNAAFDMGHLEQTYKRFNLG-VCDN 540

Query: 122 RIIDTLSIARRKH----------------------PSSRNDLNSLCKRYGITISHRSKHG 159
            ++DTL++AR  +                         R +L +L K + + ++    H 
Sbjct: 541 PVLDTLALARVLYHHQYGVYWNYATDATIDEKFKRKMKRFNLKALSKFFKVDLTQH--HR 598

Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT 199
           A+ D+      +I M+     +    KT+++     +K+T
Sbjct: 599 AIYDARATGQAFILMLR--DILKLDIKTHDEVNQLVDKET 636


>gi|295135069|ref|YP_003585745.1| exonuclease family protein [Zunongwangia profunda SM-A87]
 gi|294983084|gb|ADF53549.1| exonuclease family protein [Zunongwangia profunda SM-A87]
          Length = 457

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +  D  K    F   + P  R   P  + L GI +E
Sbjct: 2   YAILDIETTGGKYNEEGITEIAIYKF-DGEKVVDQFISLINPE-RPIQPFVVGLTGINNE 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P F  +     +     +   +AHNAKFD   +  E +R+  +     + + T+ 
Sbjct: 60  MLRNAPKFYEVAKRIVEI--TTDCIIVAHNAKFDYRILRTEFKRLGFEF--QRKSLCTVE 115

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           ++++  P      L  L +  GI +S R  H A  D+     ++ KM++ 
Sbjct: 116 LSKKLIPDMPSYSLGKLVRALGIPLSDR--HRANGDAQATVKLF-KMLLA 162


>gi|325265145|ref|ZP_08131871.1| DNA polymerase III PolC-type (PolIII) [Clostridium sp. D5]
 gi|324029549|gb|EGB90838.1| DNA polymerase III PolC-type (PolIII) [Clostridium sp. D5]
          Length = 233

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FD+ETTGL+ + + IIEIGA+++ D  K    F  F+ P     SP  + L GIT+E
Sbjct: 5   YIAFDLETTGLNPEQNEIIEIGALKVRDG-KVQERFMEFVRPT-ENISPVVMNLTGITNE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D  S  ++  +F DF  +     I HN  FD  F+         D       IDTL 
Sbjct: 63  MVADARSSRNVIPDFLDFCGDD--ILIGHNVIFDYSFVKIGAMAEGLDF--ERAGIDTLK 118

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           IAR+ H       L  LC  Y I  +  + H A  D+   + +Y  +
Sbjct: 119 IARKVHKDMESKSLGCLCDYYHIENN--AAHRAYHDALATAKLYQTL 163


>gi|255522480|ref|ZP_05389717.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes FSL J1-175]
          Length = 807

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R IV D+ETTG  + + DRII+  A   ++  K   T+  FL P  +       +L G
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +
Sbjct: 61  ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           DT+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161


>gi|260587424|ref|ZP_05853337.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
           20583]
 gi|331083705|ref|ZP_08332816.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542291|gb|EEX22860.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
           20583]
 gi|330403916|gb|EGG83468.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 236

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 84/203 (41%), Gaps = 10/203 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D+ETTGL+   DRIIEIGAV++ +       +   + P   +      +L GI+
Sbjct: 2   MEYVALDLETTGLEPSKDRIIEIGAVKVRNKEVVGE-YGTLINPQ-MEIPDRITELTGIS 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++ KP  +    E  DF  E     + HN  FD  F+  +        +   + +DT
Sbjct: 60  NDMVQGKPLIAQALGELLDFCEE--LPLLGHNLMFDYSFVKHQAVNAGM--VFEKKGMDT 115

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           L +AR   P      L +L   Y I    +  H AL D+     +Y ++     +     
Sbjct: 116 LKLARALLPELPSRSLQNLRMHYEIP--QKDAHRALEDARTTYLLYERLREEFEEKQPKL 173

Query: 186 KTNEDRFFKEEKKTVPNISLLKR 208
                  +K  KK  P  +  KR
Sbjct: 174 FVPNALIYK-VKKQGPVTAAQKR 195


>gi|59713199|ref|YP_205974.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
 gi|59481447|gb|AAW87086.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
          Length = 212

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 9/169 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   + DR IEIGAV+L +    +R FQ  + P G + SP      GI++ 
Sbjct: 16  VVLDFETTGLSPNQGDRAIEIGAVKLENGVVVDR-FQGLMNP-GFRVSPFIENYTGISNR 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D  S   + +EF +F   Q    +AHNA FD  F++ EL  I ++         +L 
Sbjct: 74  MLADAASCDEVMNEFANFI--QGCNLVAHNASFDKRFLDGELALIQREY--DGDFACSLL 129

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++RR    +S + L  L   + I       H AL D+ + + +++ ++ 
Sbjct: 130 VSRRLTQEASSHKLGDLVAYHQIENDG-VFHRALADAEVTASLWLVLLE 177


>gi|206561350|ref|YP_002232115.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
 gi|198037392|emb|CAR53327.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
          Length = 375

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 92/172 (53%), Gaps = 10/172 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +  D+ETTG  S + RI EIG VE+        T+   + P G+   P   +L 
Sbjct: 10  ASEQPLVFVDLETTGGSSADHRITEIGVVEI--GPLGVSTWTSLVNP-GQAIPPFIQQLT 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+D  ++D P+F+S+    ++  +     ++AHNA FD GF+ AE +R          +
Sbjct: 67  GISDAMVRDAPTFASLAPALFERLD--GKLFVAHNASFDRGFLRAEFERAGLTFNPD--V 122

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + T+ ++R   P  SR+ L++L +R+G+  +  ++H AL D+ LL   + ++
Sbjct: 123 LCTVRLSRALFPRESRHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172


>gi|291287661|ref|YP_003504477.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884821|gb|ADD68521.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
          Length = 228

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 9/172 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETTGLD  + RII + AV++ ++   +  +  F+ P   +   E+++ H ITDE +
Sbjct: 47  VIDTETTGLDLNDARIINVAAVKVQNFKIID-FYNSFINPET-EIPKESIQWHNITDEMV 104

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL--S 128
            DKP+   +  +F +F +  ++  + H+  FD+  IN E+       ++ +  +DT+   
Sbjct: 105 ADKPTAGEVLPDFLNFVD--DSIIVGHHVTFDIKMINKEMMDSFSCQINNN-WLDTMLIY 161

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                    R  L+ L   Y +T + R  H AL D+   ++V+ KM++  S+
Sbjct: 162 SHAIIKKDERYSLDYLLDLYNVTCNGR--HTALGDALATAEVFTKMIMQASR 211


>gi|313665237|ref|YP_004047108.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           leachii PG50]
 gi|312949309|gb|ADR23905.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           leachii PG50]
          Length = 1480

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 88/169 (52%), Gaps = 5/169 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + + FD+ETTGL  + D IIE GA+E    +   +   + + P   K      KL  I +
Sbjct: 432 KMVFFDLETTGLSPELDEIIEFGAIEYNFKTGERKKIDILIKPK-AKLKDFTKKLTNINE 490

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L++KP     F +       ++A  +AHNA FD  F++   Q++    L+ + IIDTL
Sbjct: 491 EMLENKPGIEVAFKQINQII--KDAILVAHNANFDYTFLSHWSQKLGYGKLE-NTIIDTL 547

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +I+R  +P  + + L SL KR  I+      H    D+ +L+D+Y +M+
Sbjct: 548 TISRIIYPELKSHRLGSLAKRVNISYDPSVAHRGDYDADILADIYERML 596


>gi|307717338|gb|ADN88722.1| DNA polymerase III [Listeria welshimeri]
 gi|307717340|gb|ADN88723.1| DNA polymerase III [Listeria welshimeri]
 gi|307717362|gb|ADN88734.1| DNA polymerase III [Listeria welshimeri]
 gi|307717368|gb|ADN88737.1| DNA polymerase III [Listeria welshimeri]
 gi|307717392|gb|ADN88749.1| DNA polymerase III [Listeria welshimeri]
          Length = 231

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 11/181 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +   F ++  +     +AHNA FD+GFIN   +++  +  D + ++DTL +AR 
Sbjct: 59  SDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAD-NAVVDTLELARF 115

Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ---INFGFKTN 188
            +P    + LN+L K++ I +     H A+ D+   + +  K++    +   INF    N
Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHDINFHDSLN 173

Query: 189 E 189
           +
Sbjct: 174 D 174


>gi|326790794|ref|YP_004308615.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM
           5427]
 gi|326541558|gb|ADZ83417.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM
           5427]
          Length = 237

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 10/169 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +V DIETTG       IIEIGAV  ++  +  + F   + P  +  S   + + GIT+
Sbjct: 3   KYVVVDIETTGAHPVQSEIIEIGAV-YIEEGQVKKIFNELVRPT-QIISDYIISITGITN 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDT 126
           E + D P    +   F DF   ++   I HN   FD   +  +   +          +DT
Sbjct: 61  EMVADAPPIEEVMPRFIDFC--EDVPLIGHNIILFDYRMLKTKATALGFTFEKMG--VDT 116

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L I+R+         L  LC+ Y I++ +   H A  D+    +++ K+
Sbjct: 117 LVISRKMLAHLPSRKLGDLCEHYAISLEN--AHRAYHDAFATYELFEKL 163


>gi|89890830|ref|ZP_01202339.1| DNA polymerase III [Flavobacteria bacterium BBFL7]
 gi|89516975|gb|EAS19633.1| DNA  polymerase III [Flavobacteria bacterium BBFL7]
          Length = 453

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 10/170 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + D+ETTG     + I EI   +  D  +    F   + P  ++  P  +KL GI ++
Sbjct: 2   YAIVDVETTGGKFNEEGITEIAIYKF-DGHEIVDQFASLVNPE-KEIQPFVVKLTGINNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  +     +    Q    +AHNA FD   +  E +R+  +    ++ + T+ 
Sbjct: 60  MLARAPKFYEVAKRIIEIM--QGTVLVAHNANFDYRMLRIEFERLGYEF--HTQTLCTVE 115

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +A++  P      L  L +  GI I+ R  H A  D+     ++ KM++ 
Sbjct: 116 LAQQLMPEEESYSLGKLTRSLGIPITDR--HRATGDALATVKLF-KMLMA 162


>gi|307717322|gb|ADN88714.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717324|gb|ADN88715.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717408|gb|ADN88757.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717412|gb|ADN88759.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717418|gb|ADN88762.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
          Length = 231

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 8/171 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +   F ++    +   +AHNA FD+GFIN   +++   P   + ++DTL +AR 
Sbjct: 59  SDPIEVVLQRFKEW--SADDILVAHNASFDMGFINTAYEKVGI-PKAKNAVVDTLELARF 115

Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +P    + LN+L K++ I +     H A+ D+   + +  K++    +++
Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMH 164


>gi|307717346|gb|ADN88726.1| DNA polymerase III [Listeria innocua]
 gi|307717356|gb|ADN88731.1| DNA polymerase III [Listeria innocua]
 gi|307717358|gb|ADN88732.1| DNA polymerase III [Listeria innocua]
 gi|307717360|gb|ADN88733.1| DNA polymerase III [Listeria innocua]
 gi|307717374|gb|ADN88740.1| DNA polymerase III [Listeria innocua]
 gi|307717388|gb|ADN88747.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 91/171 (53%), Gaps = 8/171 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +  +F ++  +     +AHNA FD+GFIN   +++  +    + ++DTL +AR 
Sbjct: 59  SDPIDVVLKQFREWSGDD--ILVAHNASFDMGFINTAYEKVGLEKA-KNAVVDTLELARF 115

Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +P    + LN+L K++ I +     H A+ D+   + +  K++    +++
Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMH 164


>gi|298208469|ref|YP_003716648.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Croceibacter atlanticus HTCC2559]
 gi|83848392|gb|EAP86261.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Croceibacter atlanticus HTCC2559]
          Length = 457

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +   +   ++     + P  R   P  + L GI ++
Sbjct: 2   YAILDIETTGGKYNEEGITEIAIYKFDGHEVVDQVIS-LVNPE-RPIQPFVVGLTGINND 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P F  I     +    Q+   +AHNAKFD   +  E +R+  +       + ++ 
Sbjct: 60  MLRNAPKFYEIAKRILEI--TQDCILVAHNAKFDYRILRTEFRRLGYE--YERETLCSVE 115

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++++  P      L  L K  GI IS R  H A  D+     ++  ++
Sbjct: 116 LSKKLLPGHASYSLGKLTKALGIPISSR--HRADGDAIATVKLFKLLL 161


>gi|217963949|ref|YP_002349627.1| DnaQ family exonuclease/DinG family helicase [Listeria
           monocytogenes HCC23]
 gi|217333219|gb|ACK39013.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           monocytogenes HCC23]
 gi|307571481|emb|CAR84660.1| ATP-dependent helicase [Listeria monocytogenes L99]
          Length = 928

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R IV D+ETTG  + + DRII+  A   ++  K   T+  FL P  +       +L G
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + +K+ P F  +          ++  ++AHN  FD  F+  E+ R     L   + +
Sbjct: 61  ISPKDVKNAPLFEDVAPIIAGLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           DT+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161


>gi|154246367|ref|YP_001417325.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
 gi|154160452|gb|ABS67668.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
          Length = 719

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 10/178 (5%)

Query: 9   KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
             VFD ETTGLD    D I++IGA  +++     +  F   + P  R      + +HGI 
Sbjct: 529 YTVFDTETTGLDPAGGDEILQIGATRIVNGRLLASECFDQLVDPQ-RSIPEAGIAVHGIR 587

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++ KP+   +   F  F    +   + HN  FD+ F+  +          P  ++DT
Sbjct: 588 PEMVRGKPTLPQVLPAFHAF--AADTVLVGHNVAFDMRFLTLKENASGVRFDQP--VLDT 643

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           L +A   HP    + L ++  R GI +S R  H AL D+   +++++K++    Q   
Sbjct: 644 LLLAAIVHPGEDSHGLEAMAARLGIAVSGR--HTALGDALATAEIFLKLLPLLRQRGI 699


>gi|328881521|emb|CCA54760.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC
           10712]
          Length = 330

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 83/200 (41%), Gaps = 10/200 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+      L         +   + P      P  + +HG+T +
Sbjct: 21  YAVVDVETTGL-ARDDRIVSAAVYRLDAQGNVEDHWYTLVNPER---DPGPVWIHGLTTD 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  I +EF    + +    +AHNA FD   I  E  R         + + T++
Sbjct: 77  VLAGAPLFPEIAAEFAARLDGR--VLVAHNAMFDWQMIAREYARAE-SAAPVRQRLCTIA 133

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+    P   + L SL   +G+    +  H AL D+ +L++ +   +   ++ N     
Sbjct: 134 LAKELSLPLPNHKLESLAAHFGVV--QQRAHNALDDARVLAEAFRPSLHAAAERNVRLPL 191

Query: 188 NEDRFFKEEKKTVPNISLLK 207
            E R   E   +     + +
Sbjct: 192 LECRPLTEWASSSERPRIGQ 211


>gi|326407708|gb|ADZ64779.1| DNA polymerase III subunit alpha, Gram-positive type [Lactococcus
           lactis subsp. lactis CV56]
          Length = 1638

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 8/183 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL + ++ +I+I A ++   +  +  F  F+ P G + S    +L GITD+
Sbjct: 596 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDD 653

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+      + ++F  F   +    +AHNA FDVGF+N    R    P+    ++DTL 
Sbjct: 654 HVKNAKPLYEVLTKFQKFC--EGTILVAHNATFDVGFMNMNYSRNGL-PIITQPVVDTLE 710

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            AR  +P   R  L  L K++ I + +   H A  D+     +    +      N G+ +
Sbjct: 711 FARNLYPEMKRFGLGQLTKKFQIGLEYH--HMANFDAEATGRLLFVFLEELRTRNTGWTS 768

Query: 188 NED 190
             +
Sbjct: 769 LLE 771


>gi|310287853|ref|YP_003939111.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum S17]
 gi|309251789|gb|ADO53537.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum S17]
          Length = 180

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG+    D IIE GAV+++D    + T+Q  + P  R  +P   +L GIT +
Sbjct: 11  YVVLDLETTGVSWYRDTIIEFGAVKVVDRKPVD-TYQQLVNP-MRNLNPFITQLTGITPD 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L+  P+  ++  +F  +  +     I HN  +FD+ FI+   QRI    + P+RIIDTL
Sbjct: 69  MLEPAPTLDTVLPDFLRWCGDD--AMIGHNIMRFDIKFIDLAAQRILHHAV-PNRIIDTL 125

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++R  +P   R+ L  L +R+ I  +   +H AL D+      +  M
Sbjct: 126 QMSRSMYPQYNRHRLVDLIQRFDI--ADVEEHRALSDAEQTQMCFEYM 171


>gi|319952129|ref|YP_004163396.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM
           14237]
 gi|319420789|gb|ADV47898.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM
           14237]
          Length = 457

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG   + ++I EI   +  D       F   + P   +       L GI + 
Sbjct: 2   YTIIDIETTGNGIQGNKITEISIFKY-DGYDVIEEFTTLINPE-AEIPYFITGLTGIDNT 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P FS +  +       +   ++AHN  FD   I  E + I  D +   + + T+ 
Sbjct: 60  MVRNAPKFSEVADQILKI--TEETIFVAHNVSFDYNIIKHEFKAIGVDFI--RQKLCTVR 115

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++R+  P      L  LC    I ++ R  H A  D+   + ++ K++ 
Sbjct: 116 LSRKLFPGYNSYSLGKLCTALKIPLTDR--HRARGDAEATTILFEKLLR 162


>gi|312601484|gb|ADQ90739.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 168]
          Length = 1447

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 7/200 (3%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +K++ ++FD+ETTGL +  + IIE GA+ L +  +  +  Q F+ P G K      K+ G
Sbjct: 385 DKLKFVIFDLETTGLSAFYNEIIEFGAIVLQNGIEIEKH-QFFIKPTG-KIPSAITKITG 442

Query: 65  ITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           I+ + + +   S+     +       +++  +AHNA FD  F+    ++  K  L  + I
Sbjct: 443 ISQKMIDETAISWEIALEKITKII--KDSVLVAHNAAFDFSFLEQFFRQKAKKSL-KNPI 499

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDTL ++R  +P+ + + L ++ KRY I       H A  D+ +L+ ++   +      N
Sbjct: 500 IDTLEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIWKNFLAELKSQN 559

Query: 183 FGFKTNEDRFFKEEKKTVPN 202
               T+         +  P 
Sbjct: 560 INDLTSLSEIKNSIFELRPE 579


>gi|114047347|ref|YP_737897.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-7]
 gi|113888789|gb|ABI42840.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7]
          Length = 239

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 16/208 (7%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL   +  R IEIGAV +     T R F   + P G + +       GI+++
Sbjct: 41  VVLDFETSGLSPNQGARAIEIGAVLIEQGQITAR-FSELMNP-GFRINSFIEDYTGISNQ 98

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L      + + + F  F  +     +AHNA FD  F++AE  +I      P +   +L 
Sbjct: 99  MLAHAAPCAEVMARFAAFIGKH--HLVAHNAAFDQRFLDAEFAQIGHQY--PGQFGCSLL 154

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR +P +  + L +L +   +  +  + H AL D+ +   ++++M+    Q   G+  
Sbjct: 155 LARRLYPEAINHQLATLVRHKQLP-TDGTFHRALADAEMTGHLWLRMLADLKQ---GYAI 210

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            E  F   +K     ++  K + P F R
Sbjct: 211 TEPPFSLMQKI----MTKTKAEVPKFLR 234


>gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260650992|emb|CBG74110.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 331

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 10/204 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L    +    +   + P      P  + +HG+T +
Sbjct: 22  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPER---DPGPVWIHGLTSD 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  EF     ++    +AHNA FD   I  E  R   +     R + T++
Sbjct: 78  VLEGAPLFRDIAQEFSARLADR--VLVAHNAVFDWSMIAREYARAETEAPVRQR-LCTIA 134

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +++    P   + L SL   +G+    +  H AL D+ +L++ +   +   +  N     
Sbjct: 135 LSKELGLPLPNHKLESLAAHFGVV--QQRAHHALDDARVLAEAFRPSLRAAAASNVRLPL 192

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211
           +E R   E +++     + ++  P
Sbjct: 193 HECRPLTEWRESPAAPRIGQQAGP 216


>gi|296135545|ref|YP_003642787.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
 gi|295795667|gb|ADG30457.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
          Length = 469

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG +   DRI E+ AV  ++  +    +   L P G++  P   +L GI D 
Sbjct: 5   YVLLDLETTGSNPVLDRITEV-AVMRVEQGEVVAKWSRLLNP-GQRIPPFIQQLTGIDDA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+F  +  E     +   A  +AHN +FD GF+     R   D     + + T+ 
Sbjct: 63  MVAGAPAFGEVLPELLAVLD--GAVLVAHNVRFDHGFLKQAAAREGVDL--RVKTLCTVR 118

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++R+ +P +R + L+++ +R+G+  +  ++H A+ D  LL   ++ +
Sbjct: 119 LSRKLYPQARGHGLDAIMRRHGLHTT--ARHRAMGDVELLHQ-WLHI 162


>gi|307717332|gb|ADN88719.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 8/171 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +   F ++    +   +AHNA FD+GFIN   +++   P   + ++DTL +AR 
Sbjct: 59  SDPIDVVLKRFKEW--SADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLELARF 115

Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +P    + LN+L K++ I +     H A+ D+   + +  K++    +++
Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMH 164


>gi|329117787|ref|ZP_08246504.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parauberis NCFD 2020]
 gi|326908192|gb|EGE55106.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parauberis NCFD 2020]
          Length = 1465

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 8/180 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +     F  F+ P G   S    +
Sbjct: 420 LDLHESTYVVFDVETTGLSAMNNDLIQIAASKMYKGN-ILEQFDEFIDP-GHPLSAFTTE 477

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  L        +  EF  F   ++   +AHNA FDVGF+NA   R N  P    
Sbjct: 478 LTGITDNHLVGAKPLHQVLVEFQAFC--KDTVLVAHNASFDVGFMNANYARENL-PKITQ 534

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +IDTL  AR  +P   R+ L  L KR+ + + H   H A  D+     +    +    +
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVALDHH--HMANYDAEATGRLLFIFLKDARE 592


>gi|152979979|ref|YP_001352248.1| hypothetical protein mma_0558 [Janthinobacterium sp. Marseille]
 gi|151280056|gb|ABR88466.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 195

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 88/168 (52%), Gaps = 9/168 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D+ETTG +  NDRI EIG V +      +R +  F+ P GR        L GI+D
Sbjct: 6   KLIFVDLETTGANLVNDRITEIGIVAVDPDGCIDR-WSTFVNP-GRPIPEFIQGLTGISD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++  P F ++     +    Q+  +IAHNA+FD GF++    R     +  + ++ T+
Sbjct: 64  EMVESAPMFETLADTVRERL--QDGLFIAHNARFDYGFLHHAFVRSGH--VLNAEMLCTV 119

Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++R   P   +++L+SL  R+ +     ++H AL D+ LL  ++ K+
Sbjct: 120 KLSRALFPAEKKHNLDSLIARHDLIPE--ARHRALADADLLWQLWRKL 165


>gi|47094224|ref|ZP_00231936.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858]
 gi|47017396|gb|EAL08217.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858]
          Length = 618

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R IV D+ETTG  + + DRII+  A   ++  K   T+  FL P  +       +L G
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +
Sbjct: 61  ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           DT+ +AR  +P      L  L   +   + H   H A  D+ + +D
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161


>gi|313202457|ref|YP_004041115.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688]
 gi|312441773|gb|ADQ85879.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688]
          Length = 473

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG     DRI EI  +   +  + +R +Q  + P      P   +L GI D 
Sbjct: 5   YVLLDLETTGATPLVDRITEIALIRFENGQEVSR-WQTLVNPETA-IPPFIQRLTGIDDG 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F  +  E  D    + A   AHN +FD GF+  E +RI  D     +++ T+ 
Sbjct: 63  MVATAPHFKEVAGELLDHL--EGAVLCAHNVRFDHGFLKNEFKRIGIDL--RQKVLCTVK 118

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++R+ +P  R + L+S+ +R+ +     ++H A+ D   L D +++
Sbjct: 119 LSRKLYPQHRSHSLDSIIERHSLQC--GARHRAMGDVVALVD-FLR 161


>gi|228982633|ref|ZP_04142892.1| DNA polymerase III PolC [Bacillus thuringiensis Bt407]
 gi|228776816|gb|EEM25124.1| DNA polymerase III PolC [Bacillus thuringiensis Bt407]
          Length = 286

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 97/216 (44%), Gaps = 12/216 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V DIETT     K  RI EIGAV+ +D    ++ +   + P   K      KL GIT+
Sbjct: 19  FVVLDIETTAFSPVKGGRITEIGAVKYIDGKVVDK-YSQLINPE-MKIPANITKLTGITN 76

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRIIDT 126
           + ++ KP +  +   F  F +      +AHNAKFD   F+    +++   P   + ++D+
Sbjct: 77  DMVQGKPVYGQVLPVFQQFID--GFLVVAHNAKFDWNRFLLFYFEKVGIHP--KNEVLDS 132

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +++ +   P+  +  L+  C  +G    +R  H A  D+       +++    +      
Sbjct: 133 VAVFQHFCPNKGKYKLDDFCTTFGYLNKNR--HRAYEDAEATGYCLLELKRRFASEIPEV 190

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           +    +    +K + P I  +KR K    +++  +L
Sbjct: 191 EEEPIKVQSVQKSSQPEI-FVKRVKYWEKKVSSTKL 225


>gi|15604982|ref|NP_219766.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76788983|ref|YP_328069.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13]
 gi|166154472|ref|YP_001654590.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu]
 gi|166155347|ref|YP_001653602.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237802684|ref|YP_002887878.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804606|ref|YP_002888760.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311062|ref|ZP_05353632.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276]
 gi|255317363|ref|ZP_05358609.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s]
 gi|255348621|ref|ZP_05380628.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70]
 gi|255503161|ref|ZP_05381551.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s]
 gi|255506839|ref|ZP_05382478.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923]
 gi|301335732|ref|ZP_07223976.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1]
 gi|3328673|gb|AAC67854.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX]
 gi|76167513|gb|AAX50521.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13]
 gi|165930460|emb|CAP03953.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu]
 gi|165931335|emb|CAP06907.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231272906|emb|CAX09817.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273918|emb|CAX10710.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           B/Jali20/OT]
 gi|289525300|emb|CBJ14776.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2]
 gi|296434850|gb|ADH17028.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150]
 gi|296435777|gb|ADH17951.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768]
 gi|296436702|gb|ADH18872.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222]
 gi|296437637|gb|ADH19798.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074]
 gi|296438570|gb|ADH20723.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023]
 gi|297140136|gb|ADH96894.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301]
 gi|297748391|gb|ADI50937.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-EC]
 gi|297749271|gb|ADI51949.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-LC]
          Length = 232

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 76/182 (41%), Gaps = 11/182 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG     DRI+E+ A        T+ +FQ  + P       EA K+HGIT   
Sbjct: 5   IFYDTETTGTQIDKDRIVELAAY----NGTTSESFQTLVNPEI-PIPAEATKIHGITTAE 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAH-NAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           + D P F   + +F +F    N   +AH N  FD   +  E +R         R ID+L 
Sbjct: 60  VADAPRFPEAYQKFIEFCGTDN-ILVAHNNNAFDYPLLVRECRRHGLSE-PQLRTIDSLK 117

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            A++      ++ L  L + YG        H AL D   L  V+  ++   S        
Sbjct: 118 WAKKYRTDLPQHSLQYLRQVYG--FEENQAHRALDDVITLYRVFSALVGDLSPDQIYDLL 175

Query: 188 NE 189
           NE
Sbjct: 176 NE 177


>gi|148656033|ref|YP_001276238.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1]
 gi|148568143|gb|ABQ90288.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1]
          Length = 956

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 13/176 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D+ETTGL++  D IIEI AV+  +  +   TF   + P        + +L GIT +
Sbjct: 5   YIAIDVETTGLEAGVDEIIEIAAVKF-NADEVLETFSTLVQP-VHSLPLNSSRLTGITAD 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ +   F  F   +N   + HN +FD+  + A+  R+      P    DT  
Sbjct: 63  MLASAPRFAEVAPRFAAFL--KNYPLVGHNVEFDLRMLRAQGMRL------PQPAFDTFE 114

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +A    P +    L++L    GI   H   H AL D+ +   +++ ++     +  
Sbjct: 115 LATLLMPRTPAYRLSALAATLGI--HHDEAHRALSDADVTRQIFLYLLRRIEALPL 168


>gi|224283886|ref|ZP_03647208.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum NCIMB
           41171]
 gi|311064734|ref|YP_003971459.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum PRL2010]
 gi|313141038|ref|ZP_07803231.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB
           41171]
 gi|310867053|gb|ADP36422.1| DnaQ DNA polymerase III alpha subunit [Bifidobacterium bifidum
           PRL2010]
 gi|313133548|gb|EFR51165.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB
           41171]
          Length = 180

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG+    D IIE GAV+++D    + T+Q  + P  R  +P   +L GIT +
Sbjct: 11  YVVLDLETTGVSWYRDTIIEFGAVKVVDRKPVD-TYQQLVNP-MRNLNPFITQLTGITPD 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L+  P+  ++  +F  +  +     I HN  +FD+ FI+   QRI    + P+RIIDTL
Sbjct: 69  MLEPAPTLDTVLPDFLRWCGDD--AMIGHNIMQFDIKFIDLAAQRILHHAV-PNRIIDTL 125

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++R  +P   R+ L  L +R+ I  +   +H AL D+      +  M
Sbjct: 126 QMSRSMYPQYNRHRLVDLIQRFDI--ADVEEHRALSDAEQTQMCFEYM 171


>gi|289435248|ref|YP_003465120.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171492|emb|CBH28036.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 928

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R IV D+ETTG  + + DRII+  A   ++  K   T+  FL P  +       +L G
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYATFLNPE-KPIPAFIQELTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + +KD P F  +          ++  ++AHN  FD  F+  E+ R     L   + +
Sbjct: 61  ISPKDVKDAPLFEDVAPIIAGLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           DT+ +AR  +P      L  L   +G  + H   H A  D+ + +D
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHQADSDAEVTAD 161


>gi|284030730|ref|YP_003380661.1| DNA polymerase III subunit epsilon [Kribbella flavida DSM 17836]
 gi|283810023|gb|ADB31862.1| DNA polymerase III, epsilon subunit [Kribbella flavida DSM 17836]
          Length = 602

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 88/233 (37%), Gaps = 27/233 (11%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
                +   V D+ETTG    +  I EIGAV++         FQ  + P      P    
Sbjct: 32  TPLRDVTFCVVDLETTGGAPGDSGITEIGAVKVRAGELVGE-FQSLVNP-AEPIPPFIAV 89

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +   P   S+   F +F   +    +AHNA FDVGF+  + Q    D  D  
Sbjct: 90  LTGITDLMVASSPRIGSVLPAFLEF--ARGCVLVAHNAPFDVGFLKHDSQVHGYDWPD-F 146

Query: 122 RIIDTLSIARRKH-PS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            ++DT  +ARR   P       L +L K +  T +    H AL D+    DV   +    
Sbjct: 147 PVVDTALLARRVLTPDEVPNCKLGTLAKLFRATTT--PNHRALSDARATVDVLHGL--FE 202

Query: 179 SQINFGFKTNED---------------RFFKEEKKTVPNISLLKRDKPLFTRI 216
              + G +T ED               R   E     P + L   D+     +
Sbjct: 203 RVGSLGVQTLEDLQTFSARVAPAVRKKRHLAESLPHAPGVYLFTDDRGEVLYV 255


>gi|29840147|ref|NP_829253.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC]
 gi|29834495|gb|AAP05131.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC]
          Length = 228

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 60/216 (27%), Positives = 92/216 (42%), Gaps = 16/216 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG     DRIIEI A      + T ++F  ++ P       EA K+HGIT   
Sbjct: 5   IFYDTETTGTQIDKDRIIEIAAY----NNVTKQSFVTYVNPEI-PIPEEASKIHGITTST 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +   P F   + +F DF   + A  +AHN   FD   +  E +R + +PL   R ID+L 
Sbjct: 60  VSSAPKFPEAYKQFCDFCGNE-AILVAHNNDSFDFPLLEKECRRHSLEPLSL-RTIDSLK 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            A++  P   +++L  L + YG   +    H AL D   L +V+  ++   S        
Sbjct: 118 WAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLYNVFSALIGDLSAEQVLALM 175

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
            E +  K  K     +   K      T +    +  
Sbjct: 176 EESQHPKAFK-----MPFGKYRGKPLTEVPASYIQW 206


>gi|257094696|ref|YP_003168337.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047220|gb|ACV36408.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 729

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 102/202 (50%), Gaps = 12/202 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLH 63
           ++   VFD ETTGL   + D II+IGA  +++     +  F   + P  R  S +++++H
Sbjct: 536 ELSYTVFDTETTGLQPSQGDEIIQIGATRIVNRRLLRHECFDQLIDP-RRPLSQQSIEVH 594

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E L  +P+  ++  +F  F    +   + HNA FD+ F+  + ++       P  +
Sbjct: 595 GITRELLVGQPTIDTVLPQFQTFCA--DTVLVGHNAAFDMRFLQLKEKQTGVRFDQP--V 650

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +DTL ++   HP+   + L ++ +R G+++  R  H AL D+ +  +V++KM+   +++ 
Sbjct: 651 LDTLLLSAVLHPNQNSHRLEAIAERLGVSVFGR--HTALGDAMVTGEVFLKMLPLLAEM- 707

Query: 183 FGFKTNEDRFFKEEKKTVPNIS 204
            G  T        EK     + 
Sbjct: 708 -GVTTLRQAREASEKTYHARLK 728


>gi|84514691|ref|ZP_01002055.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella
           vestfoldensis SKA53]
 gi|84511742|gb|EAQ08195.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella
           vestfoldensis SKA53]
          Length = 469

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 17/212 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL 60
           +    +  +VFD ETTG     D +++IGA+ +++  +       + + P GR     + 
Sbjct: 269 VPLRDLTYVVFDTETTGFLPNKDEVVQIGALRVVNGQQAPGEVLDLLVNP-GRAIPASST 327

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +H ITD  +KD P       +F  F   ++A  +AHNA FD+ F +    +I      P
Sbjct: 328 AVHRITDAMVKDAPDMVHAGRKFHSF--ARDAVLVAHNAPFDLSFFHRYAPKIGMKFDHP 385

Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             ++DT+ ++      +  + L+ L KR GI +  + +H A+ D+    D++++M+    
Sbjct: 386 --VLDTVLLSAVLFGITEGHTLDELAKRLGIELLDKHRHTAIGDAIATRDIFLRMI---- 439

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                    E R        V  I   KR  P
Sbjct: 440 ------PMLEARGLTTFGAVVAEIRKHKRLLP 465


>gi|300173484|ref|YP_003772650.1| DNA polymerase III subunit alpha [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887863|emb|CBL91831.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 1437

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL +  D+IIE+ AV+ +        F  ++ P G   S    KL  ITD 
Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVK-MQLGNVIEKFSEYINP-GFPLSDFTTKLTSITDT 476

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    +  +I   F  +  E  A  I HN  FD+GF+NA   R +++ +  + +IDTL 
Sbjct: 477 MVAHTDTEENIIKRFRQWVGE--AVLIGHNVTFDIGFMNAAYARYSQESI-TNPVIDTLP 533

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R  +P  +   L ++ KR+ I +     H A+ D+     +  +++
Sbjct: 534 FTRWLYPDYKSYRLGTIAKRFNINLE--QAHRAIFDAETTGHIAWRLI 579


>gi|297621916|ref|YP_003710053.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044]
 gi|297377217|gb|ADI39047.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044]
          Length = 249

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 15/234 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    K + +  D ETTGLD K DR+IE+  V      K +  F+  + P  R     ++
Sbjct: 1   MSCLEKQQFVCLDCETTGLDPKEDRVIEVACVAFTLEEKLD-AFETLIDPE-RDIPETSI 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LD 119
            +H IT + +  KP    +  +  DF        + H  +FD+  I+    R      L 
Sbjct: 59  AIHHITQKMVAGKPKVKEVLPKVLDFVGSH--IIVGHGIQFDIEAISHSCDRAGISKNLR 116

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +  IDTL +AR    S  N L  L K + I       H A+ D  +  +V+ +++ G S
Sbjct: 117 DNPFIDTLRMARLYGESPINSLEHLRKHFNIE--SEIAHRAMSDVMVNIEVFKQLLKGYS 174

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL--DEHDKTIQTL 231
            +       +      +   +  + L K     F  I  + L    H    Q L
Sbjct: 175 SLK------QLNKILAKPIMLKEMPLGKHKGRPFKEIPVQYLRWAAHQDFDQDL 222


>gi|311746711|ref|ZP_07720496.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1]
 gi|126578388|gb|EAZ82552.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1]
          Length = 456

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 9/178 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   + DIETTG  +    I EI  +   D  K    F+  + P  +        L GI 
Sbjct: 1   MEFAIVDIETTGGAASTCGITEIAILIH-DGEKVIEEFESLINPE-QDIPTYITGLTGID 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + D P+F  +  + WD  + +   ++AH+  FD GF+ A    I ++       + T
Sbjct: 59  NSMVSDAPTFEELSDKLWDLLHGR--VFVAHSVNFDYGFVRACFNAIGREFKVD--KLCT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           + +AR+  P  S   L  +C+   I I   ++H A+ D+   + ++ +M+   SQ  F
Sbjct: 115 VRLARKIIPGLSSYSLGRICETQKIPI--LARHRAMGDARATAILFDQMLKKDSQTVF 170


>gi|307717410|gb|ADN88758.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
 gi|307717414|gb|ADN88760.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
 gi|307717416|gb|ADN88761.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
          Length = 231

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 8/171 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +   F ++    +   +AHNA FD+GFIN   +++   P   + ++DTL +AR 
Sbjct: 59  SDPIDVVLQRFKEW--SADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLELARF 115

Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +P    + LN+L K++ I +     H A+ D+   + +  K++    +++
Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMH 164


>gi|119717352|ref|YP_924317.1| hypothetical protein Noca_3128 [Nocardioides sp. JS614]
 gi|119538013|gb|ABL82630.1| DNA polymerase III, epsilon subunit [Nocardioides sp. JS614]
          Length = 601

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 92/232 (39%), Gaps = 28/232 (12%)

Query: 4   KNKMRKIVFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
              +   V D+ETTG  ++    I EIGAV++         FQ  + P   +       L
Sbjct: 25  LRDITFCVVDLETTGGSAEGGAMITEIGAVKVRGGEVLGE-FQTLVNPRT-EIPAFIAVL 82

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI++  + D P   +    F +F     +  +AHNA FDVGF+    ++  + P     
Sbjct: 83  TGISNSMVADAPPVEAALPAFLEF--AAGSVLVAHNAPFDVGFLRYFAEQQGR-PWPGFE 139

Query: 123 IIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           ++DT  +ARR   +  +    L+SL K +G T +    H AL D+    DV   +M    
Sbjct: 140 VVDTARLARRVVSRDDAPNCKLSSLAKAFGSTTT--PNHRALSDARATVDVLHGLMERLG 197

Query: 180 QINFGFKTNED---------------RFFKEEKKTVPNISLLKRDKPLFTRI 216
               G  T E+               R   E     P + L + ++     +
Sbjct: 198 --GVGVHTLEELQTFSSRVSSAQRRKRHLAEGLPHAPGVYLFRDEQAQVLYV 247


>gi|225850145|ref|YP_002730379.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
 gi|225645024|gb|ACO03210.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
          Length = 205

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 8/192 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG + +++ IIEI A++       +R +   + P          KL GIT  
Sbjct: 11  FTIIDIETTGFNPESNDIIEIAAIKYQGNIILDRFWS-LIKPEIELIPEHISKLTGITTA 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D+P+   +  +F +F   +N   + HN +FD+ F+N + + I    +  +  I T  
Sbjct: 70  MVIDQPTVDKVLPDFLNFI--ENTILVGHNIRFDLAFLNKKAKEILNKTI-KNPFICTDH 126

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR+         L S+ + + I  S   +H A+ D+ +  +++IKM+      N  FK 
Sbjct: 127 LARKILSDIDSKSLASIAQHFNIPFS--RQHRAMYDAEVNLEIFIKMLRFLEDYNV-FKV 183

Query: 188 NEDRFFKEEKKT 199
            +     E KK 
Sbjct: 184 MDIIKLSEGKKV 195


>gi|150025957|ref|YP_001296783.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86]
 gi|149772498|emb|CAL43981.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 453

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 10/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +   +   ++ F   + P      P  +KL GI + 
Sbjct: 2   YAILDIETTGGQFNEEGITEIAIYKFDGHQIVDQ-FISLVNPEI-PIQPFVVKLTGINNA 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  +     +    ++   +AHN  FD   +  E  R+  D    ++ + T+ 
Sbjct: 60  MLVSAPKFHEVAKRIVEI--TKDCIIVAHNTVFDYRILRTEFSRLGYDF--QAKTLCTVE 115

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +A+   P      L  L +  GI I++R  H A  D+     ++ KM++
Sbjct: 116 LAKILIPEQPSYSLGKLVRALGIPITNR--HRAEGDALATVKLF-KMLL 161


>gi|171056929|ref|YP_001789278.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170774374|gb|ACB32513.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
          Length = 731

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 10/170 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGIT 66
             VFD ETTGL+    D II+IGA  +     +   +F+  + P  R   P  + +HGI 
Sbjct: 541 YTVFDTETTGLNPSDGDEIIQIGATRISGGKLRRQESFEQLVDPQ-RPIPPAGIPIHGIK 599

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +  +P+   +   F  F   Q+   +AHNA FD+ F+  +  R       P  ++DT
Sbjct: 600 PDMVAGQPTIDHVLPAFHAF--AQDTVLVAHNAAFDMRFLQLKQDRTGLVFDQP--VLDT 655

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L ++   HP    + L ++ +R+ IT+  R  H AL D+ + ++V+++++
Sbjct: 656 LLLSAVVHPNQESHRLEAIAERFSITVVGR--HTALGDAMVTAEVFVRLI 703


>gi|170288240|ref|YP_001738478.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2]
 gi|170175743|gb|ACB08795.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2]
          Length = 186

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 9/181 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59
           +  N     V D ETTG D    DRI+EI AV +       N+ F   + P  R      
Sbjct: 1   MIWNDTVFCVVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNPRIR-IPALI 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGI++  +++ P   ++++ F D+   +    + HNA FD+ F++   +     P+ 
Sbjct: 60  QKVHGISNMDIEEAPDMDAVYNLFRDYV--KGTVLVFHNANFDLTFLDMMAKETGNFPI- 116

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +  IDTL ++        + L  LC+R GI  + R  H AL D+ + + V++K++    
Sbjct: 117 TNPYIDTLDLSEEIF-GRPHSLKWLCERLGIKTTIR--HRALPDALVTARVFVKLVEFLG 173

Query: 180 Q 180
           +
Sbjct: 174 E 174


>gi|15618325|ref|NP_224610.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
           CWL029]
 gi|15835943|ref|NP_300467.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138]
 gi|16752629|ref|NP_444893.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39]
 gi|4376690|gb|AAD18554.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029]
 gi|8163413|gb|AAF73657.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila
           pneumoniae AR39]
 gi|8978782|dbj|BAA98618.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138]
 gi|269303286|gb|ACZ33386.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Chlamydophila pneumoniae LPCoLN]
          Length = 237

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 11/178 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  +     I +D ETTG   + DRIIEI A      S T+ +F  ++ P       EA 
Sbjct: 1   MSSQTMDVLIFYDTETTGTQIERDRIIEIAAY----NSVTDESFLTYVNPEI-PIPDEAS 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLD 119
           K+HGIT + +   P F   +  F  F   +++  +AHN   FD   +  E +R + +PL 
Sbjct: 56  KIHGITTDAVLSAPKFPEAYEGFRKFCG-EDSILVAHNNDGFDFPLLGKECRRHSLEPL- 113

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +R ID+L  A++  P   +++L  L + YG   +    H AL D  +L  V+  ++ 
Sbjct: 114 TNRTIDSLKWAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVVILHKVFTSLIG 169


>gi|313632670|gb|EFR99647.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           seeligeri FSL N1-067]
          Length = 928

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R IV D+ETTG  + + DRII+  A   ++  K   T+  FL P  +       +L G
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYATFLNPE-KPIPAFIQELTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + +KD P F  +          ++  ++AHN  FD  F+  E+ R     L   + +
Sbjct: 61  ISPKDVKDAPLFEDVAPIIAGLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           DT+ +AR  +P      L  L   +G  + H   H A  D+ + +D
Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHQADSDAEVTAD 161


>gi|294811879|ref|ZP_06770522.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|326440385|ref|ZP_08215119.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|294324478|gb|EFG06121.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 334

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 10/202 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+      L    +    +   + P      P  + +HG+T +
Sbjct: 20  YAVVDVETTGL-ARDDRIVSAAVYRLDARGEVEDHWYTLVNPER---DPGPVWIHGLTSD 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  I  EF    + +    +AHNA FD   I  E  R  +      + + T++
Sbjct: 76  VLAGAPLFQDIADEFSQRLDGR--VLVAHNAMFDWSMIAREYARA-RRTAPTRQRLCTIA 132

Query: 129 IAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+  + P   + L SL   +G+    R  H AL D+ +L++ +   +   ++       
Sbjct: 133 LAKELRLPLPNHKLESLAAHFGVV--QRQAHHALDDARVLAEAFRPSLHTAARDGVRLPL 190

Query: 188 NEDRFFKEEKKTVPNISLLKRD 209
            E     E   +     +  + 
Sbjct: 191 LECLPLTEWSDSPAVARIGYQP 212


>gi|170698522|ref|ZP_02889593.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170136606|gb|EDT04863.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 375

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 10/170 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +  D+ETTG  S   RI EIG VE+        T+   + P G+   P   +L GI
Sbjct: 12  EQPLVFVDLETTGGSSAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQAIPPFIQQLTGI 68

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +DE ++D PSF+S+     +  +     ++AHNA FD GF+ AE +R          ++ 
Sbjct: 69  SDEMVRDAPSFASLAPALVERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLC 124

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           T+ ++R   P   R+ L++L +R+G+  +  ++H AL D+ LL   + ++
Sbjct: 125 TVRLSRALFPREARHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172


>gi|307717354|gb|ADN88730.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 91/171 (53%), Gaps = 8/171 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +  +F ++    +   +AHNA FD+GFIN   +++  +    + ++DTL +AR 
Sbjct: 59  SDPIDVVLKQFKEW--SGDNILVAHNASFDMGFINTAYEKVGIEKA-KNAVVDTLELARF 115

Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +P    + LN+L K++ I +     H A+ D+   + +  K++    +++
Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMH 164


>gi|289772455|ref|ZP_06531833.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289702654|gb|EFD70083.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
          Length = 330

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 11/197 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L    +    +   + P      P  + +HG+T +
Sbjct: 25  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPQR---DPGPVWIHGLTSD 80

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P F  +  EF    + +    +AHNA FD   I  E  R  ++     R + T++
Sbjct: 81  VLRDAPLFPDVAEEFAARLDGR--VLVAHNAVFDWQMIAREYARAEREAPVRQR-LCTIA 137

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +++    P   + L SL   +G+    +  H AL D+ +L++ +   ++  +  +     
Sbjct: 138 LSKALDLPLPNHKLESLAAHFGVV--QQRAHHALDDARVLAEAFRPSLLAAAAGDVRLPL 195

Query: 188 NEDRFFKE-EKKTVPNI 203
           +E R   E   +  P I
Sbjct: 196 HECRPLTEWSDRPAPRI 212


>gi|21220316|ref|NP_626095.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)]
 gi|256788562|ref|ZP_05526993.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|6117870|emb|CAB59443.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
           [Streptomyces coelicolor A3(2)]
          Length = 328

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 11/197 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L    +    +   + P      P  + +HG+T +
Sbjct: 23  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPQR---DPGPVWIHGLTSD 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P F  +  EF    + +    +AHNA FD   I  E  R  ++     R + T++
Sbjct: 79  VLRDAPLFPDVAEEFAARLDGR--VLVAHNAVFDWQMIAREYARAEREAPVRQR-LCTIA 135

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +++    P   + L SL   +G+    +  H AL D+ +L++ +   ++  +  +     
Sbjct: 136 LSKALDLPLPNHKLESLAAHFGVV--QQRAHHALDDARVLAEAFRPSLLAAAAGDVRLPL 193

Query: 188 NEDRFFKE-EKKTVPNI 203
           +E R   E   +  P I
Sbjct: 194 HECRPLTEWSDRPAPRI 210


>gi|307297316|ref|ZP_07577122.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916576|gb|EFN46958.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 182

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 8/171 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64
           M  +V D ETTG++  +  ++IE+  V + ++    +  F   + P           L G
Sbjct: 1   MEFVVIDTETTGMNPYRGAKLIEVAGVRVKNWELCRDDFFDSLIDPEC-IIPIAITALTG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I++  +KDK +   +   F+ F    +A  + HNA FD+ FIN    +     L  ++ I
Sbjct: 60  ISNLTVKDKSTVCDVLRGFYSFAG--DATLVIHNAPFDLSFINFYGDKCGLGKL-RNQFI 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+ +++      RN+L+ L  R GI    R  H AL D+   ++ ++ M+
Sbjct: 117 DTIEVSKAVFRYGRNNLDILLARLGIIPESR--HRALGDALATAEAFVAML 165


>gi|227553912|ref|ZP_03983959.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis HH22]
 gi|227176898|gb|EEI57870.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis HH22]
          Length = 929

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|260769807|ref|ZP_05878740.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
 gi|260615145|gb|EEX40331.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
          Length = 205

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 84/176 (47%), Gaps = 9/176 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL     DR IEIGAV+L+D  +   TFQ  + P G + S       GIT+ 
Sbjct: 9   IVLDFETTGLSPNMGDRAIEIGAVKLVDG-QVAGTFQQLMNP-GFRVSGFIEGYTGITNT 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+       + +EF  F    +   +AHNA FD  F++AE  RI      P +   ++ 
Sbjct: 67  MLRTALPCEEVMAEFAHFIG--DTPLVAHNASFDKRFLDAEFDRIGVRY--PGQFACSML 122

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           IARR   ++  + L  L +   I     + H AL DS + + +++ M+    +   
Sbjct: 123 IARRLIQNAPTHKLGDLVRFKQIENDG-TFHRALADSQMTASLWMLMVNDLRERGV 177


>gi|126665661|ref|ZP_01736642.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17]
 gi|126629595|gb|EBA00212.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17]
          Length = 483

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 9/203 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D+ETTG     DRI EIG           + +Q  + P  R  SP   +L GI++ 
Sbjct: 13  FAFLDLETTGGSVATDRITEIGIQFWRAGECVGQ-WQTLVNPKTR-ISPFIEQLTGISNA 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P F  I  E     +     ++AHNA+FD GF+  E +R+ +  +  ++++ T+ 
Sbjct: 71  MVADAPLFEDIADELEQRLD--GVVFVAHNARFDYGFVKGEFRRLGRMFV--AKVLCTVK 126

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++RR +P   R+++++L +R+G+      +H A+ D   +   +  ++    +       
Sbjct: 127 LSRRLYPEFRRHNMDALIERHGLQ--QVQRHRAMGDVAAMLGFFEHVLAQQGEDTLETAI 184

Query: 188 NEDRFFKEEKKTVPNISLLKRDK 210
            E          +P  +L +  +
Sbjct: 185 CELLQRPSIPSHLPLDTLQELPR 207


>gi|255972155|ref|ZP_05422741.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|255963173|gb|EET95649.1| DNA polymerase III [Enterococcus faecalis T1]
          Length = 929

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|229545209|ref|ZP_04433934.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
 gi|229309754|gb|EEN75741.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
          Length = 175

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 8/172 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLI 172


>gi|15835437|ref|NP_297196.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
 gi|270285617|ref|ZP_06195011.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
 gi|270289627|ref|ZP_06195929.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss]
 gi|301337013|ref|ZP_07225215.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14]
 gi|8163328|gb|AAF73606.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum
           Nigg]
          Length = 250

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 6/183 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+    +  +  D ETTGLD K DR+IE  A+    + +   + +  + P  R  S E+ 
Sbjct: 1   MVLLKDIEFVCLDCETTGLDVKKDRVIEFAAIRFT-FDEVIDSVEFLIHPE-RAVSAESQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K+H I+D  LKDKP FS +FS    FF E++   + H+  FD+  ++ E +R+ +  L  
Sbjct: 59  KIHKISDAMLKDKPKFSEVFSTIKGFFKERD-YIVGHHVGFDLQVLSQESERLGETLLPK 117

Query: 121 SRI-IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               IDTL +A+    S  N L +L + + +   H+  H A+ D  +   V+  +     
Sbjct: 118 QHYVIDTLRLAKEYGDSPNNSLEALARHFNVP--HQGNHRAMKDVEMNVKVFKHLTKRFR 175

Query: 180 QIN 182
            ++
Sbjct: 176 TLS 178


>gi|311695934|gb|ADP98807.1| DNA polymerase III, epsilon subunit [marine bacterium HP15]
          Length = 486

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 9/156 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               DIETTG +S  DRI EIG             +Q  L P  R  SP      GI++E
Sbjct: 13  FAFLDIETTGGNSARDRITEIGIRFWRAGEVVGE-WQTLLNPETR-ISPFIENFTGISNE 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P F  +  E       +   ++AHNA+FD GFI +E +R+ +  L  ++++ T+ 
Sbjct: 71  MVADAPLFEEVADELEAQL--KGKVFVAHNARFDYGFIKSEFRRLGR--LFSAKVLCTVK 126

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163
           ++RR +P   R+++++L  R+G+    R  H A+ D
Sbjct: 127 LSRRLYPEFRRHNMDALIARHGLARVQR--HRAMGD 160


>gi|91789989|ref|YP_550941.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666]
 gi|91699214|gb|ABE46043.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666]
          Length = 729

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 98/182 (53%), Gaps = 10/182 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLH 63
           ++   VFD ETTGL+    D II+IGA+ +++     N T    + P  R+  PE++ +H
Sbjct: 536 QLSYTVFDTETTGLEPSAGDEIIQIGAIRIVNGRLLRNETIDQLIDP-RRRLKPESIAIH 594

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT++ +K +P+       F +F   ++   +AHNA FD+ F+  +L+  +   +    +
Sbjct: 595 GITEDMVKGQPTIEQALPAFHEFC--EDTVLVAHNAAFDMRFL--QLKEASTGIVFRQPV 650

Query: 124 IDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +DTL ++   HP    + L ++  R GI +  R  H AL D+ +  ++++KM+   +Q N
Sbjct: 651 LDTLLLSALLHPNQESHRLEAIAGRLGINVIGR--HTALGDAIVTGEIFLKMIPLLAQQN 708

Query: 183 FG 184
             
Sbjct: 709 IH 710


>gi|315173642|gb|EFU17659.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1346]
          Length = 929

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|315035644|gb|EFT47576.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0027]
          Length = 929

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|257087406|ref|ZP_05581767.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|256995436|gb|EEU82738.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|315025444|gb|EFT37376.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2137]
          Length = 929

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|256963550|ref|ZP_05567721.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|307271490|ref|ZP_07552762.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0855]
 gi|256954046|gb|EEU70678.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|306511762|gb|EFM80760.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0855]
          Length = 929

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|256853717|ref|ZP_05559082.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|307291048|ref|ZP_07570934.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0411]
 gi|256710660|gb|EEU25703.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|306497897|gb|EFM67428.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0411]
 gi|315030986|gb|EFT42918.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4000]
          Length = 929

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|29376872|ref|NP_816026.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Enterococcus faecalis V583]
 gi|227519901|ref|ZP_03949950.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis TX0104]
 gi|29344337|gb|AAO82096.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Enterococcus faecalis V583]
 gi|227072695|gb|EEI10658.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis TX0104]
 gi|315574388|gb|EFU86579.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0309B]
 gi|315580138|gb|EFU92329.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0309A]
          Length = 929

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|315150174|gb|EFT94190.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0012]
          Length = 929

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|315032870|gb|EFT44802.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0017]
          Length = 929

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|257416585|ref|ZP_05593579.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
 gi|257158413|gb|EEU88373.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
          Length = 929

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|256617168|ref|ZP_05474014.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|307277210|ref|ZP_07558314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2134]
 gi|256596695|gb|EEU15871.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|295113409|emb|CBL32046.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus sp. 7L76]
 gi|306506140|gb|EFM75306.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2134]
          Length = 929

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|229549451|ref|ZP_04438176.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis ATCC 29200]
 gi|256956656|ref|ZP_05560827.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|257419833|ref|ZP_05596827.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|300861259|ref|ZP_07107346.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
           faecalis TUSoD Ef11]
 gi|312953414|ref|ZP_07772254.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0102]
 gi|229305688|gb|EEN71684.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis ATCC 29200]
 gi|256947152|gb|EEU63784.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|257161661|gb|EEU91621.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|300850298|gb|EFK78048.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
           faecalis TUSoD Ef11]
 gi|310628623|gb|EFQ11906.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0102]
 gi|315152082|gb|EFT96098.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0031]
 gi|315159114|gb|EFU03131.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0312]
 gi|315170323|gb|EFU14340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1342]
 gi|327535661|gb|AEA94495.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis OG1RF]
          Length = 929

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|325681442|ref|ZP_08160968.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
           albus 8]
 gi|324106932|gb|EGC01222.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
           albus 8]
          Length = 1498

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FD+ETTG + ++D+IIEIGAV+L      ++ F + + P G   +     L  ITD+
Sbjct: 447 IICFDLETTGTNPRDDKIIEIGAVKLRGLEIVDK-FDMLVDP-GCPLTEFISNLTNITDD 504

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK +    +    F +F  E+    +AHNA FD GFI    +R           IDT+ 
Sbjct: 505 MLKGQSDIKTALEAFVEFCGEKPC-LVAHNAPFDTGFIKHACEREGIKF--EFSSIDTVP 561

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +++   P   ++ LN + + +G        H    D+ +L  ++I++
Sbjct: 562 MSQLMLPQLEKHKLNYVAEHFG--YGDFQHHRGCDDAEVLGKIFIEL 606


>gi|256763069|ref|ZP_05503649.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|257079582|ref|ZP_05573943.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|294779459|ref|ZP_06744857.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis PC1.1]
 gi|307270866|ref|ZP_07552153.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4248]
 gi|312903707|ref|ZP_07762881.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0635]
 gi|256684320|gb|EEU24015.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256987612|gb|EEU74914.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|294453465|gb|EFG21869.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis PC1.1]
 gi|306512779|gb|EFM81424.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4248]
 gi|310632899|gb|EFQ16182.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0635]
 gi|315166434|gb|EFU10451.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1341]
          Length = 929

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|302561385|ref|ZP_07313727.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302479003|gb|EFL42096.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 314

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 83/212 (39%), Gaps = 12/212 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L    +    +   + P      P  + +HG+T +
Sbjct: 10  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTTVNPER---DPGPVWIHGLTSD 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  + +EF      +    +AHNA FD   I  E  R   +     R+     
Sbjct: 66  VLEGAPLFKDVAAEFAARL--EGRVLVAHNAVFDWQMIAREYARARGEAPVRQRLCTIAL 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
               K P   + L SL   +G+    R  H AL D+ +L++ +   +   +        +
Sbjct: 124 SKELKLPLPNHKLESLAAHFGVV--QRRAHHALDDARVLAEAFRPSLRAAAAGGVRLPLH 181

Query: 189 EDRFFKEEKKTVPNISLLKRD---KPLFTRIT 217
           E R   E  +  P I         +P   R +
Sbjct: 182 ECRPLTEWTER-PRIGQQAGPGGYRPASWRPS 212


>gi|257082037|ref|ZP_05576398.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|256990067|gb|EEU77369.1| DNA polymerase III [Enterococcus faecalis E1Sol]
          Length = 929

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|26554369|ref|NP_758303.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
 gi|26454379|dbj|BAC44707.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
          Length = 1458

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 7/180 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            + +    ++FDIETTGL    D+IIE GA++     +   + Q+F+ P   K S +   
Sbjct: 414 TKISDATYVIFDIETTGLSPYYDKIIEFGAIKYHKGVQV-ESIQMFINPE-EKISDKIFA 471

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120
           +  I++E +KD         +  DF    ++  IAHN  KFD+ F+N +L+    D +  
Sbjct: 472 ITKISNEDVKDALKIKEALVKIKDFIG--DSVLIAHNGIKFDLPFLNCKLEENKMDII-K 528

Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + +IDTL I+R  +     + L  + ++Y I       H A  D+  L +++ +M+    
Sbjct: 529 NPLIDTLQISRAINEQIHGHSLGVIARKYKIDYDETQAHRADKDAEYLLNIWKRMLENQK 588


>gi|110004377|emb|CAK98715.1| probable dna polymerase III alpha subunit protein [Spiroplasma
           citri]
          Length = 1453

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 105/204 (51%), Gaps = 10/204 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++FD+ETTGL S  D IIE GAV +   S   +       P+  K S    +L GITD
Sbjct: 409 KYVIFDLETTGLSSGYDEIIEFGAVIMDGISGERQIINHLFKPS-VKLSSFTTELTGITD 467

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L DKP+F     +  ++F  ++A  IAHNA+FD+GFI + L++  +  ++ + +IDTL
Sbjct: 468 ELLADKPTFIESIDQILEYF--KDAILIAHNAEFDLGFIQSWLKKAGRSEIN-NTVIDTL 524

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            ++R   P  +N  L ++ + Y +  +    H    D+ +L+D+Y   +      N+G +
Sbjct: 525 QLSRILEPHLKNYRLGTIARCYSVIYNEEVAHRGDYDAIVLTDIYEHQLRKMIN-NYGIE 583

Query: 187 TNEDRFFKEEKKTVPNISLLKRDK 210
            + D     E    P +    R K
Sbjct: 584 FDNDI----ENIHDPAVYKKLRPK 603


>gi|149372305|ref|ZP_01891493.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
 gi|149354695|gb|EDM43258.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
          Length = 460

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 82/214 (38%), Gaps = 18/214 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   + DIETTG     + I EI      D  K    F   + P  R   P  + L GI 
Sbjct: 1   MNYAILDIETTGGKYNEEGITEIAIYRF-DGEKVVDQFCSLVNPE-RPIQPFVVNLTGIN 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + LK+ P F  +     +    ++   +AHNA+FD   +  E  R+  D       + T
Sbjct: 59  SDMLKNAPKFYEVAKRIVEI--TKDCILVAHNAQFDNRILTTEFDRLGYDF--DLETLCT 114

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           + ++++  P      L  L +  GI I+ R  H A  D+     ++ KM++         
Sbjct: 115 VELSKKLIPDMPSYSLGKLVRSLGIPITDR--HRAQGDAKATVTLF-KMLL--------L 163

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           K  E    K   K  P   +  +   L  +   E
Sbjct: 164 KDTEKEIIKAAVKKDPKRQIDTKLLDLIKQAPSE 197


>gi|326692531|ref|ZP_08229536.1| Rad3-related DNA helicase [Leuconostoc argentinum KCTC 3773]
          Length = 801

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 10/182 (5%)

Query: 2   IRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +  NK   +V D+ETTG   ++  RII+IG   + +    +  F+ F+ P G+       
Sbjct: 1   MNANK-TFVVVDLETTGQSVARGGRIIQIGMTFIKNRRIVD-HFESFVNP-GQPIDRNIQ 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L  I+++ ++D P F  I     +    Q+   IAHN  FD  ++N EL R    P+  
Sbjct: 58  QLTHISEKDVRDAPYFEEIVPVLRNML--QDTVLIAHNINFDYPYLNDELARTGF-PVLN 114

Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +  IDT+ +A+   P++    L  L     IT+++   H A  D+   + +++K+     
Sbjct: 115 NPAIDTVQLAQILLPTAPGYRLLDLTTFLNITLNN--AHRANADAQATALLFLKLWQKAE 172

Query: 180 QI 181
           Q+
Sbjct: 173 QL 174


>gi|312899802|ref|ZP_07759121.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0470]
 gi|311293052|gb|EFQ71608.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0470]
 gi|315146017|gb|EFT90033.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2141]
          Length = 929

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|307287736|ref|ZP_07567779.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0109]
 gi|306501474|gb|EFM70777.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0109]
 gi|315164835|gb|EFU08852.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1302]
          Length = 929

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|315161735|gb|EFU05752.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0645]
          Length = 929

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|257421980|ref|ZP_05598970.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
 gi|257163804|gb|EEU93764.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
 gi|315155308|gb|EFT99324.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0043]
          Length = 929

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|126661817|ref|ZP_01732816.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
 gi|126625196|gb|EAZ95885.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
          Length = 453

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 10/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +  D  +    F   + P  +   P  +KL GI + 
Sbjct: 2   YAIIDIETTGGQFNEEGITEIAIYKF-DGHEVVDQFISLVNPE-KPIQPFVVKLTGINNA 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  +     +    +    +AHNA FD   +  E +R+  D     + + T+ 
Sbjct: 60  MLRSAPKFYEVAKRIIEI--TEGCVIVAHNASFDYRILKTEFRRLGYDF--KKQTLCTVE 115

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++++  P      L  L +  GI ++ R  H A  D+     ++ KM++
Sbjct: 116 LSKKLIPEQPSYSLGKLVRALGIPMADR--HRANGDALATVKLF-KMLL 161


>gi|255975219|ref|ZP_05425805.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|307285838|ref|ZP_07565972.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0860]
 gi|255968091|gb|EET98713.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|306502599|gb|EFM71866.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0860]
          Length = 929

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|114565211|ref|YP_752725.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
 gi|114336504|gb|ABI73886.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
          Length = 204

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   N+   +V D ETTGL   N DR IEIGAV+L++    + TFQ  + P GR+ +   
Sbjct: 1   MKLANQ--VVVLDFETTGLSPDNGDRAIEIGAVKLVNGQIVD-TFQELINP-GRRVNSFI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +  GI+++ LK  P+   +  +F  F +  N   +AHNA FD  F++AE          
Sbjct: 57  EQYTGISNDMLKHAPTSKQVMGQFAKFIDGFN--LVAHNASFDKKFLDAEFSHSKLHY-- 112

Query: 120 PSRIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +   +L ++RR    +  + L +L   + +       H AL D+ + S +++  +
Sbjct: 113 SGQFACSLLLSRRISQDAPNHKLGTLVDHHQLPNDG-VFHRALADATMTSHLWLHQI 168


>gi|319950676|ref|ZP_08024577.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4]
 gi|319435659|gb|EFV90878.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4]
          Length = 547

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 85/206 (41%), Gaps = 13/206 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++  +V D+ETTG     D I EIGAV +    +       F+  +G        +L 
Sbjct: 33  LSEVTFVVVDLETTGTRPGGDEITEIGAVRIR-GGEVQAELSTFVSIDGV-LPGHISRLT 90

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI  E L   PS   + + F +F   + A  +AHNA+FD+GF+ A          DP   
Sbjct: 91  GIAPEDLVGAPSLGEVMATFLEF--SRGAVLVAHNARFDLGFLRAAAAATGHRWPDP-PS 147

Query: 124 IDTLSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           + TL++ARR         + L  L    G T+     H AL D+    DV   ++     
Sbjct: 148 VCTLALARRVLHRGETRGHRLGVLAAHLGATVE--PNHRALQDARATVDVLHALISRVG- 204

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLL 206
            + G  T  +     + +  P I   
Sbjct: 205 -DCGVSTLSE-LLAYDGRLAPEIRRR 228


>gi|307717320|gb|ADN88713.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717330|gb|ADN88718.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717378|gb|ADN88742.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717380|gb|ADN88743.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717394|gb|ADN88750.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717396|gb|ADN88751.1| DNA polymerase III [Listeria monocytogenes]
          Length = 231

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 91/171 (53%), Gaps = 8/171 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL +AR 
Sbjct: 59  SDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELARF 115

Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +P    + LN+L K++ I +     H A+ D+   + +  K++    +++
Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMH 164


>gi|295397429|ref|ZP_06807516.1| DNA polymerase III [Aerococcus viridans ATCC 11563]
 gi|294974330|gb|EFG50070.1| DNA polymerase III [Aerococcus viridans ATCC 11563]
          Length = 314

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 8/174 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ DIETTGL   ND I+E+ A+ + D+   +RTF   + PN R  S     L GI++ 
Sbjct: 25  YVMIDIETTGLKPSNDEILELSAIRIRDHQM-DRTFSTLVQPN-RPISGFITNLTGISNH 82

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P       EF DF  E     + +N  FD+ FI      +   P+  +  +D L+
Sbjct: 83  MVMTAPPIEQAIPEFLDFIQED--IILGYNVNFDLSFIYDTAVNLYNFPV-RNDYLDVLT 139

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           IAR+    +  + L ++ + YGI+      H  L D ++  +VY ++     Q+
Sbjct: 140 IARKLVTETPNHKLGTMAQFYGISYEG--AHRGLTDCYITVEVYNQLFNQAKQV 191


>gi|323481332|gb|ADX80771.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           62]
          Length = 929

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|86143556|ref|ZP_01061941.1| nuclease subunit Cho of the excinuclease complex (UvrC-like
           protein) [Leeuwenhoekiella blandensis MED217]
 gi|85830003|gb|EAQ48464.1| nuclease subunit Cho of the excinuclease complex (UvrC-like
           protein) [Leeuwenhoekiella blandensis MED217]
          Length = 519

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 9/169 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  + D+ETTG   K ++I EI  + L +  + NR F   + P GR+      KL GI D
Sbjct: 49  KFAIIDVETTGGGIKGNKITEICIIVLQEGKEINR-FASLVNP-GREIPLYIEKLTGIND 106

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++D P F  +  +       Q+  ++AHN  FD   + AE +    D     + + T+
Sbjct: 107 RMVEDAPYFDELAPQIDAL--TQDCIFVAHNVGFDYNVVRAEFKEAGLDF--NRKRLCTV 162

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +A++  P      L +LC    I I H  +H A  D+     ++ + +
Sbjct: 163 RLAKKLIPGLFSYSLGNLCT--SINIPHYDRHRATGDTEATVILFQRCL 209


>gi|265993833|ref|ZP_06106390.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str.
           Ether]
 gi|262764814|gb|EEZ10735.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str.
           Ether]
          Length = 143

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 59/143 (41%), Positives = 88/143 (61%), Gaps = 2/143 (1%)

Query: 101 FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
           FD+GFINAEL R+++  +    I+DTL++ARRKHP   N L++LCKRYGI  SHR+ HGA
Sbjct: 2   FDLGFINAELARLDQAEITSEHIVDTLALARRKHPIGPNSLDALCKRYGIDNSHRTLHGA 61

Query: 161 LLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT-VPNISLLKRDKPLFTRITKE 219
           LLD+ +L++VYI+++ GG Q   G          + +      + L  R +PL  RI+  
Sbjct: 62  LLDAQILAEVYIELI-GGKQTALGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISDA 120

Query: 220 ELDEHDKTIQTLGKNAIWDRYIS 242
           E   H   ++ +G  A+W +Y+S
Sbjct: 121 ERAAHAALVEKMGDKAVWKKYLS 143


>gi|257084662|ref|ZP_05579023.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|256992692|gb|EEU79994.1| DNA polymerase III [Enterococcus faecalis Fly1]
          Length = 929

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN      +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPNQA-VPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|218961823|ref|YP_001741598.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease
           (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730480|emb|CAO81392.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease
           (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 960

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 8/175 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   ++  +  DIETTGL+S+ D II+I  +      +    F   + P G K       
Sbjct: 17  LPLEQLEFVAIDIETTGLNSEWDEIIQIAGMRFK-GEEVVNQFVSLVKPKG-KVPKFIEH 74

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  I+ + LK  P    +  +F +F    ++  + HN  FD  F+N  +      P+  +
Sbjct: 75  LTHISPQELKTAPPIKEVLKDFCNFIG--DSILVGHNIGFDFNFLNQFIVDNGGFPIS-N 131

Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              DT  I R   P ++ + L++L   +GI +   + H A  D+     ++  + 
Sbjct: 132 MHWDTAEIGRIYLPFTTDHKLSTLVSFFGIEL--MNAHQADADALATGKLFNALT 184


>gi|146301193|ref|YP_001195784.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
 gi|146155611|gb|ABQ06465.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
          Length = 453

 Score =  151 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 10/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +  D  +    F   + P      P  +KL GI + 
Sbjct: 2   YAILDIETTGGQFNEEGITEIAIYKF-DGHEVVDQFISLVNPEI-PIQPFVVKLTGINNA 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  +     +     +   +AHNA FD   +  E +R+  D    ++ + T+ 
Sbjct: 60  MLRSAPKFYEVAKRIIEI--TTDCVIVAHNASFDYRILRTEFRRLGYDF--EAKTLCTVE 115

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +A++  P      L  L +  GI ++ R  H A  D+   + ++ KM++
Sbjct: 116 LAKKLIPEQPSYSLGKLVRALGIPMADR--HRASGDAMATTKLF-KMLL 161


>gi|307717326|gb|ADN88716.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717328|gb|ADN88717.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717342|gb|ADN88724.1| DNA polymerase III [Listeria marthii]
 gi|307717348|gb|ADN88727.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717364|gb|ADN88735.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717370|gb|ADN88738.1| DNA polymerase III [Listeria marthii]
 gi|307717372|gb|ADN88739.1| DNA polymerase III [Listeria marthii]
 gi|307717376|gb|ADN88741.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717382|gb|ADN88744.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717384|gb|ADN88745.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717398|gb|ADN88752.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717404|gb|ADN88755.1| DNA polymerase III [Listeria monocytogenes]
          Length = 231

 Score =  151 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 91/171 (53%), Gaps = 8/171 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL +AR 
Sbjct: 59  SDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELARF 115

Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +P    + LN+L K++ I +     H A+ D+   + +  K++    +++
Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMH 164


>gi|83319984|ref|YP_424323.1| DNA polymerase III, alpha subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283870|gb|ABC01802.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 1479

 Score =  151 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 5/169 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + + FD+ETTGL  + D IIE GA+E    +   +   + + P  +       KL  I +
Sbjct: 431 KMVFFDLETTGLSPELDEIIEFGAIEYNFKTGERKKIDILIKPKSKLKD-FTKKLTNINE 489

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L++KP     F E       ++A  +AHNA FD  F++   +++    L+ + IIDTL
Sbjct: 490 EMLENKPGIEVAFKEINQVI--KDAILVAHNANFDYTFLSHWSEKLGYGKLE-NTIIDTL 546

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +I+R  +P  + + L SL KR  I+      H    D+ +L+D+Y +M+
Sbjct: 547 TISRIIYPELKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERML 595


>gi|311742833|ref|ZP_07716641.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM
           15272]
 gi|311313513|gb|EFQ83422.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM
           15272]
          Length = 569

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 79/206 (38%), Gaps = 18/206 (8%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    K  RI EIGAV +         FQ  + P+          L GITD
Sbjct: 32  FCVVDLETTGGSPQKGSRITEIGAVLVRGGEVLGE-FQTLVNPD-ESIPAFITVLTGITD 89

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +   P  +     F +F   + +  +AHNA FD GF+      +   P     ++DT 
Sbjct: 90  QMVVQAPRIAEALPSFLEF--ARGSVLVAHNAPFDTGFLRHAAAELQI-PWPRFEVLDTA 146

Query: 128 SIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            +ARR   +       L +L    G T +    H AL D+    DV   +      +   
Sbjct: 147 LLARRVLLAGEVRNCKLGTLAAHVGATTT--PNHRALSDARATVDVLHHLFERLGPLGVH 204

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDK 210
                    +E +     ++  +R K
Sbjct: 205 -------SLEEARAYTSTVTPAQRRK 223


>gi|297529654|ref|YP_003670929.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           C56-T3]
 gi|297252906|gb|ADI26352.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           C56-T3]
          Length = 909

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 15/218 (6%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++ D+ETTG    K DRII++G   + D     R F  F  P  +       +L  I 
Sbjct: 4   RFVIIDLETTGNGPKKGDRIIQLGMAVVEDGLIVER-FASFFNPE-QPIPLFIQQLTNIN 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++  P F+    E         A ++AHN  FD+ F+ AEL+R    P      IDT
Sbjct: 62  EQMVEGAPLFADKAGEIAALM--HGAYFVAHNVDFDLPFLQAELERAGWPPFA-GPTIDT 118

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           + +AR   P+     L  L ++ G  + H   H A  D+ + + ++I ++   S++    
Sbjct: 119 VELARIVLPTAESYKLGDLARQLG--LHHDRPHQADSDAEVTAKLFIALLKRLSRLPL-M 175

Query: 186 KTNEDRFFKEEKKT-----VPNISLLKRDKPLFTRITK 218
              + R      K+     +  +   KR+K    R   
Sbjct: 176 TLEQLRGLARHLKSDIYLLLDAVIAKKRNKAPADRAVA 213


>gi|332525056|ref|ZP_08401237.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
 gi|332108346|gb|EGJ09570.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
          Length = 645

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 10/170 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGIT 66
             VFD ETTGL+    D II+IGA  ++    + + +F+  + P  R      + +HGIT
Sbjct: 455 YTVFDTETTGLEPSAGDEIIQIGATRIVAGKLRRHESFEQLVDPQ-RAIPERTVAIHGIT 513

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +  +P+   +      F    +   +AHNA FD+ F+  + +        P  ++DT
Sbjct: 514 PAMVAGQPTIREVLPALHAF--AHDTVLVAHNAAFDLRFLELKERAAGVRFDMP--VLDT 569

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L +++  HP   R+ L ++ +R G+ +  R  H AL D+ + ++V++KM+
Sbjct: 570 LLLSQVLHPNQERHSLEAIAERLGVPVLGR--HTALGDAIVTAEVFLKMI 617


>gi|71907013|ref|YP_284600.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71846634|gb|AAZ46130.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 204

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 10/191 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            V D ETTGL   + DR  EI AV L +    +R +Q  +   G +      +L GI++ 
Sbjct: 5   AVIDFETTGLSPAQGDRATEIAAVILENGKVVDR-YQSLMN-AGVRIPSFIEQLTGISNA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P  + +  E  DF    +   +AHNA FD  F +AE+ RIN           +L 
Sbjct: 63  MIRSAPPAAQVMREVSDFVG--DIPLVAHNASFDCKFWDAEVARINLQ--RCQEFACSLL 118

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR  P +  + L +L +   + ++ R  H AL D+ + + + +  + G  +   G + 
Sbjct: 119 LARRLMPLAPSHKLGALIEFAKLPVAGR-AHRALADAEMAASL-LAYLAGELRSKHGIQQ 176

Query: 188 NEDRFFKEEKK 198
                 ++ + 
Sbjct: 177 VTHELLRKIQG 187


>gi|260426760|ref|ZP_05780739.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
 gi|260421252|gb|EEX14503.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
          Length = 468

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 7/176 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60
              + +   VFD ETTGL    D +++IGAV +L+          + + P G      + 
Sbjct: 269 TPLSALSYTVFDTETTGLLPHKDEVVQIGAVRVLNGRIVPGEVLDLLVDP-GIPIPASSS 327

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++H +TD  +  KP        F  F   + +  +AHNA FD+ F+     R+  +   P
Sbjct: 328 RVHKVTDAMVAGKPDIGEAGRRFHRF--AKGSVIVAHNAPFDMAFLRRHRDRMGVEWDHP 385

Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             I+DT+ ++     +S  + L++LC+R G+ I    +H AL D++  + V + M+
Sbjct: 386 --ILDTVLLSAVLFGASETHTLDALCQRLGVEIPQALRHTALGDANATAQVLVMML 439


>gi|148269564|ref|YP_001244024.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1]
 gi|147735108|gb|ABQ46448.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1]
          Length = 186

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 9/181 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59
           +  N     V D ETTG D    DRI+EI AV +       N+ F   + P  R      
Sbjct: 1   MIWNDTVFCVVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNPRIR-IPALV 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGI++  +++ P   ++++ F D+   +    + HNA FD+ F++   +     P+ 
Sbjct: 60  QKVHGISNMDIEEAPDMDAVYNLFRDYV--KGTVLVFHNANFDLTFLDMMAKETGNFPI- 116

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +  IDTL ++        + L  LC+R GI  + R  H AL D+ + + V++K++    
Sbjct: 117 TNPYIDTLDLSEEIF-GRPHSLKWLCERLGIKTTIR--HRALPDALVTARVFVKLVEFLG 173

Query: 180 Q 180
           +
Sbjct: 174 E 174


>gi|33241759|ref|NP_876700.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
           TW-183]
 gi|33236268|gb|AAP98357.1| DNA-directed DNA polymerase III alpha chain [Chlamydophila
           pneumoniae TW-183]
          Length = 232

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 11/169 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG   + DRIIEI A      S T+ +F  ++ P       EA K+HGIT + 
Sbjct: 5   IFYDTETTGTQIERDRIIEIAAY----NSVTDESFLTYVNPEI-PIPDEASKIHGITTDA 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLS 128
           +   P F   +  F  F   +++  +AHN   FD   +  E +R + +PL  +R ID+L 
Sbjct: 60  VLSAPKFPEAYEGFRKFCG-EDSILVAHNNDGFDFPLLGKECRRHSLEPL-TNRTIDSLK 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            A++  P   +++L  L + YG   +    H AL D  +L  V+  ++ 
Sbjct: 118 WAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVVILHKVFTSLIG 164


>gi|257090540|ref|ZP_05584901.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
 gi|256999352|gb|EEU85872.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
 gi|315578691|gb|EFU90882.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0630]
          Length = 929

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + D       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYDFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|239932092|ref|ZP_04689045.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291440458|ref|ZP_06579848.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291343353|gb|EFE70309.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
          Length = 327

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 10/188 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+      L    +    +   + P      P  + +HG+T E
Sbjct: 23  YAVVDVETTGL-ARDDRIVSAAVYRLDARGEVEDHWYTVVNPER---DPGPVWIHGLTSE 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  +  EF      +    +AHNA FD   I  E  R  +      + + T++
Sbjct: 79  ALEGAPLFRDVAEEFATRL--EGRVLVAHNAVFDWQMIAREYARA-RSEAPVKQRLCTIA 135

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +++    P   + L SL   +G+    R  H AL D+ +L++ +   +   +        
Sbjct: 136 LSKELGLPLPNHKLESLAAHFGVV--QRRAHHALDDARVLAEAFRPSLRAAAASGVRLPL 193

Query: 188 NEDRFFKE 195
           +E R   E
Sbjct: 194 HECRPLTE 201


>gi|261417986|ref|YP_003251668.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus sp. Y412MC61]
 gi|319767201|ref|YP_004132702.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y412MC52]
 gi|261374443|gb|ACX77186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y412MC61]
 gi|317112067|gb|ADU94559.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y412MC52]
          Length = 909

 Score =  151 bits (382), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 9/178 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++ D+ETTG    K DRII++G   + D     R F  F  P  +       +L  I 
Sbjct: 4   RFVIIDLETTGNGPKKGDRIIQLGMAVVEDGLIVER-FASFFNPE-QPIPLFIQQLTNIN 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++  P F+    E         A ++AHN  FD+ F+ AEL+R    P      IDT
Sbjct: 62  EQMVEGAPLFADKAGEIAALM--HGAYFVAHNVDFDLPFLQAELERAGWPPFA-GPTIDT 118

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           + +AR   P+     L  L ++ G+   H   H A  D+ + + ++I ++   S++  
Sbjct: 119 VELARIVLPTAESYKLGDLARQLGLR--HDRPHQADSDAEVTAKLFIALLKRLSRLPL 174


>gi|186475443|ref|YP_001856913.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815]
 gi|184191902|gb|ACC69867.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815]
          Length = 392

 Score =  151 bits (382), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG    + RI E+G VE+        ++   + P G+   P   +L GIT++
Sbjct: 15  IVFVDLETTGGSVGDHRITEVGVVEVGPNG--VSSWTTLVDP-GQPIPPFIQQLTGITND 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+F +I ++   F       +IAHNA FD GF+ +E QR          ++ T+ 
Sbjct: 72  MVRGAPTFEAIAADL--FARLDGKLFIAHNASFDRGFLRSEFQRAGFAFNPD--VLCTVR 127

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++R   P   R+ L++L +R+ +  S R  H AL D+ LL   + ++
Sbjct: 128 LSRALFPAEKRHGLDALVERHALMPSDR--HRALADADLLWQFWQRL 172


>gi|107022085|ref|YP_620412.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116689029|ref|YP_834652.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|170732318|ref|YP_001764265.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|254246035|ref|ZP_04939356.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|105892274|gb|ABF75439.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647118|gb|ABK07759.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|124870811|gb|EAY62527.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|169815560|gb|ACA90143.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 375

 Score =  151 bits (382), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 91/172 (52%), Gaps = 10/172 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +  D+ETTG    + RI EIG VE+        T+   + P G+   P   +L 
Sbjct: 10  ASEQPLVFVDLETTGGSLADHRITEIGVVEI--GPLGVSTWTSLVNP-GQAIPPFIQQLT 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+D  ++D P+F+S+    ++  +     ++AHNA FD GF+ AE +R          +
Sbjct: 67  GISDAMVRDAPTFASLAPALFERLD--GKLFVAHNASFDRGFLRAEFERAGLAFNPD--V 122

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + T+ ++R   P  SR+ L++L +R+G+  +  ++H AL D+ LL   + ++
Sbjct: 123 LCTVRLSRALFPRESRHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172


>gi|229157184|ref|ZP_04285264.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342]
 gi|228626248|gb|EEK82995.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342]
          Length = 315

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P  R        L GIT+ 
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D  +   +   F  F +      +AHNA FD+ F+ + +  ++  P   +++IDT+ 
Sbjct: 68  RVSDARTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLSL-PEPKNKVIDTVF 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +A++       + L +L +  GI +S    H A  D    + VY K
Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167


>gi|24373798|ref|NP_717841.1| DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1]
 gi|24348190|gb|AAN55285.1|AE015666_9 DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1]
          Length = 212

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 9/173 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL   +  R IEIGAV +     T R F   + P G + +       GI+++
Sbjct: 14  VVLDFETSGLSPNQGARAIEIGAVLIEQGQITTR-FSELMNP-GFRINAFIEDYTGISNQ 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L      + + + F +F  +     +AHNA FD  F++AE   I        +   +L 
Sbjct: 72  MLAHAAPCAEVMARFAEFIGKH--HLVAHNAAFDQRFLDAEFAHIGHQY--SGQFGCSLL 127

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +ARR +P +  + L +L +   +   + + H AL D+ +   ++++M+    Q
Sbjct: 128 LARRLYPEAINHQLATLVRHKQLPN-NGTFHRALADAEMTGHLWLRMLADLKQ 179


>gi|115350920|ref|YP_772759.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD]
 gi|115280908|gb|ABI86425.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
          Length = 375

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 10/170 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +  D+ETTG  S   RI EIG VE+        T+   + P G+   P   +L GI
Sbjct: 12  EQPLVFVDLETTGGSSAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQSIPPFIQQLTGI 68

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D+ ++D PSF+S+    ++  +     ++AHNA FD GF+ AE +R          ++ 
Sbjct: 69  SDDMVRDAPSFASLAPTLFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLC 124

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           T+ ++R   P   R+ L++L +R+G+  +  ++H AL D+ LL   + ++
Sbjct: 125 TVRLSRALFPREARHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172


>gi|154487101|ref|ZP_02028508.1| hypothetical protein BIFADO_00941 [Bifidobacterium adolescentis
           L2-32]
 gi|154084964|gb|EDN84009.1| hypothetical protein BIFADO_00941 [Bifidobacterium adolescentis
           L2-32]
          Length = 256

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 9/165 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ETTG    +DRI+EIGA+ + +     R +   + P  R    E  +L+G+TD  L+
Sbjct: 89  IDLETTGFSPSDDRIVEIGAIRVRNGRPVKR-YSQLINPQ-RPLPEEITRLNGLTDADLR 146

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++P+   +  +F  F    N   I HN  +FD  F+ A   R+    +  ++ IDTL + 
Sbjct: 147 NQPTVDQVLPDFIRFIG--NDTLIGHNINEFDAAFLLANTTRLGMRHIG-NKTIDTLPLD 203

Query: 131 RRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           R  +P   ++ L  + +R+GI  +    H A  D+   +  Y  M
Sbjct: 204 RALYPEEPKHRLVDIIRRFGI--AQTESHRAADDALQTAQCYETM 246


>gi|307717400|gb|ADN88753.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 8/171 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +   F ++    +   +AHNA FD+GFIN   +++   P   + ++DTL +AR 
Sbjct: 59  SDPIDVVLKRFKEW--SADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLELARF 115

Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +P    + LN+L K++ I +     H A+ D+   + +  K++    +++
Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLGWKLIKDAKEMH 164


>gi|307717334|gb|ADN88720.1| DNA polymerase III [Listeria seeligeri]
 gi|307717336|gb|ADN88721.1| DNA polymerase III [Listeria seeligeri]
 gi|307717366|gb|ADN88736.1| DNA polymerase III [Listeria seeligeri]
 gi|307717402|gb|ADN88754.1| DNA polymerase III [Listeria seeligeri]
 gi|307717406|gb|ADN88756.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 8/171 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+ +K 
Sbjct: 1   DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                 +   F ++    +   +AHNA FD+GFIN   +++   P   + ++DTL +AR 
Sbjct: 59  SDPIDVVLKRFKEW--SADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLELARF 115

Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +P    + LN+L K++ I +     H A+ D+   + +  K++    +++
Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLGWKLIKDAKEMH 164


>gi|311899062|dbj|BAJ31470.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae
           KM-6054]
          Length = 329

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 10/164 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL  ++DR+I  G  +L    +    +   + P      P  + +HG+T E
Sbjct: 25  FAVVDVETTGL-GRSDRVISAGVYQLDPDGEITDHWYTLVNPQR---DPGPVWIHGLTSE 80

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P+F  + +EF +   ++    +AHNA FD   I+ E  R         + + T+ 
Sbjct: 81  VLAGAPTFPEVAAEFAERLRDR--VLVAHNALFDWNMISREFSRAGLRA-PVEQRLCTMV 137

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +AR    P     L+SL   +   +  R  H AL D+ +L++V+
Sbjct: 138 LARDLRLPLPNGKLSSLAAHF--DVRQRQAHHALDDARVLAEVF 179


>gi|254000498|ref|YP_003052561.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4]
 gi|253987177|gb|ACT52034.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4]
          Length = 470

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG     DRI EI  +   +  + +R +Q  + P      P   +L GI D 
Sbjct: 5   YVLLDLETTGATPLVDRITEIALIRFENGQEVSR-WQTLVNPETA-IPPFIQRLTGIDDG 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F  +  E  +    + A   AHN +FD GF+  E +RI  D     +++ T+ 
Sbjct: 63  MVATAPRFREVAGELLNHL--EGAVLCAHNVRFDHGFLKNEFKRIGIDL--RQKVLCTVK 118

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++R+ +P  R + L+S+ +R+ +     ++H A+ D   L D +++
Sbjct: 119 LSRKLYPQHRSHSLDSIIERHSLQC--GARHRAMGDVVALVD-FLR 161


>gi|164686248|ref|ZP_02210278.1| hypothetical protein CLOBAR_02686 [Clostridium bartlettii DSM
           16795]
 gi|164601850|gb|EDQ95315.1| hypothetical protein CLOBAR_02686 [Clostridium bartlettii DSM
           16795]
          Length = 174

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 9/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M + N  + IV D+ETTGLD  +   I    +  +  +K  R +   + P G        
Sbjct: 1   MNKYNDDKYIVVDLETTGLDPFSGCEIIEIGITEIVNNKIGRNYSRLVKPKG-IIPSHIT 59

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +  IT++ ++D  S  ++   F  +    +   IAHNAKFD+ F+N  L  +  + ++ 
Sbjct: 60  NITSITNDMVEDAESLETVLPNFRKYVG--DTTIIAHNAKFDLKFLNYYLDLLGLEKINN 117

Query: 121 SRIIDTLSIARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              I TL + +R   +      L + C  Y I   H   H A  D+   + +++ +
Sbjct: 118 --HICTLEMLKRCKSYKGKNKKLETACNYYNIVNEH--AHRANSDTLATAKLFLTI 169


>gi|120435022|ref|YP_860708.1| exonuclease family protein [Gramella forsetii KT0803]
 gi|117577172|emb|CAL65641.1| exonuclease family protein [Gramella forsetii KT0803]
          Length = 457

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 10/170 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +  D  K    F   + P  +   P  + L GI ++
Sbjct: 2   YAILDIETTGGKYNEEGITEIAIYKF-DGQKVVDQFISLVNPE-QPIQPFVVNLTGINND 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK+ P F  +     +    ++   +AHNAKFD   +  E +R+  +     + + T+ 
Sbjct: 60  MLKNAPKFYEVAKRIVEI--TEDCILVAHNAKFDYRILRTEFRRLGFEY--ERKSLCTVE 115

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           ++++  P      L  L +  GI +S R  H A  D+     ++ KM++ 
Sbjct: 116 LSKKLIPGLPSYSLGKLVRSLGIPLSDR--HRAAGDAQATIKLF-KMLLA 162


>gi|329929867|ref|ZP_08283543.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp.
           HGF5]
 gi|328935845|gb|EGG32306.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp.
           HGF5]
          Length = 971

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 9/209 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +M+  V D ETTG +   D II++G   + +    +R +  ++ P G    P    L GI
Sbjct: 13  EMKFAVLDFETTG-NQSADEIIQVGLAIIEEDRSISRVYGTYVNP-GIPIPPFITGLTGI 70

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + D PS   +  E     +  +   + HN  FD  F+   L R    P    RI+D
Sbjct: 71  SDSDVADAPSLEEMMMELVPMLD--DVVLVGHNVAFDFNFLQNALDRCGYLPFS-GRILD 127

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-F 183
           T+   +   PS     L  +   +G  + H   H A  D+   +   +K +    ++   
Sbjct: 128 TMHFLKICFPSLPSYQLGMVSSHFG--LEHDRPHQADSDALATAYALLKCLEEIDELPLL 185

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
             +   D F  E+         ++ D+ L
Sbjct: 186 TIQRLSDLFADEDSDLAWFFDGIRSDREL 214


>gi|218134802|ref|ZP_03463606.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990187|gb|EEC56198.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC
           43243]
          Length = 237

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG +   DRIIE+GA + ++  +    F  F+ P     SP    L GITDE
Sbjct: 5   YVAIDLETTGTNPAEDRIIEVGAAK-VECGRVVSIFSTFVNPQI-SISPRITSLTGITDE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  + I ++   +   ++   + HN  FD  FI         +       IDTL 
Sbjct: 63  DVAGAPVIADIIADMIAY--TKDVPILGHNVIFDYSFIKKAAANSKLEYAKEG--IDTLK 118

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           IARR  P   +  L +LC+ + I       H AL D+   S +Y  +
Sbjct: 119 IARRILPDVPHKNLPALCEHFKIDP--GKSHRALDDAISASKLYYAL 163


>gi|118586857|ref|ZP_01544291.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163]
 gi|290890494|ref|ZP_06553569.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429]
 gi|118432689|gb|EAV39421.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163]
 gi|290479890|gb|EFD88539.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429]
          Length = 1437

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 98/184 (53%), Gaps = 10/184 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             +FDIETTGL + ND+II++ AV++ +      TF  F+ P G   S + + L GITD+
Sbjct: 410 YTIFDIETTGLSAVNDKIIQLSAVKMKNG-VVLDTFDQFINP-GFPLSEQTINLTGITDD 467

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +K+    + +   F  F+         HN  KFD GF+N  L  ++K P   + +IDTL
Sbjct: 468 LVKNSKPEAEVLKMFQQFYA--GTILAGHNVIKFDYGFVNHALA-VHKLPKINTLVIDTL 524

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           ++AR  +P+  R  L+ L K++ + + H   H A+ DS     + + + +  ++ N+G  
Sbjct: 525 NLARWLYPNFGRYTLDFLSKKFSVNLEHH--HRAIDDSTATGML-LHIFLKEAEENYGVV 581

Query: 187 TNED 190
            +E 
Sbjct: 582 YDEQ 585


>gi|134093833|ref|YP_001098908.1| putative DNA polymerase/helicase [Herminiimonas arsenicoxydans]
 gi|133737736|emb|CAL60781.1| putative DNA-polymerase/ribonuclease/exonuclease [Herminiimonas
           arsenicoxydans]
          Length = 193

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D+ETTG +  NDRI EIG V +      +R +  F+ P GR        L GI+D
Sbjct: 6   KLIFIDLETTGANLINDRITEIGIVTVNADGDIDR-WSSFVNP-GRPIPSFIQDLTGISD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P+F ++     +    ++  +IAHNA+FD GF++  L R          ++ T+
Sbjct: 64  RMVATAPTFETLADTVRERL--EDGLFIAHNARFDYGFLHHALARAGHAL--SIDVLCTV 119

Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            ++RR  P   R++L++L  R+G+     ++H AL D+ LL  ++ K+  
Sbjct: 120 KLSRRFFPEEKRHNLDTLIARHGLVPE--ARHRALADADLLWQLWEKLTA 167


>gi|229012784|ref|ZP_04169953.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048]
 gi|228748465|gb|EEL98321.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048]
          Length = 318

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 19/208 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG +  ND+II++ AV+  ++   ++ F  ++ P           L GIT+ 
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-LSIPDRITSLTGITNY 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F  F +      +AHNA FD+ F+ + +  +   P   + +IDT+ 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 127

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A++       + L +L +  GI +S    H A  D    + VY K              
Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQKC----------AAV 174

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            E+   K  K+ +   ++ +  K +  R
Sbjct: 175 EEEGKRKANKEVLDETAVFEAVKEMLVR 202


>gi|149277808|ref|ZP_01883948.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39]
 gi|149231496|gb|EDM36875.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39]
          Length = 456

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 9/158 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V DIETTG  +  + I EI  +   +     + ++  + P G+        L GI+
Sbjct: 1   MLYAVVDIETTGGHASGNGITEISILVH-NGHSIVQNYETLINP-GQYIPAHIEALTGIS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++  PSF+ + +E +   +++   ++AHN  FD  FI  +L     +     R + T
Sbjct: 59  NEMVETAPSFNQVAAEVYQLLHDK--IFVAHNVNFDFSFIRHQLGVCGYEL--SCRKLCT 114

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLD 163
           + ++R+  P  R   L  LC    I++++R  H A  D
Sbjct: 115 VRMSRKIIPGHRSYSLGKLCAALNISLNNR--HRAGGD 150


>gi|54023690|ref|YP_117932.1| hypothetical protein nfa17220 [Nocardia farcinica IFM 10152]
 gi|54015198|dbj|BAD56568.1| putative DNA polymerase III subunit [Nocardia farcinica IFM 10152]
          Length = 598

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 84/205 (40%), Gaps = 17/205 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG   + D I EIGAV++         F   + P GR   P  +++ GIT  
Sbjct: 27  FVVVDLETTGTSPEGDAITEIGAVKVRGGEVLGE-FATLVNP-GRAIPPAVVQVTGITTA 84

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P   ++   F +F     A  +AHNA+FD              P   + ++ T+ 
Sbjct: 85  LVYAAPRIEAVLPGFLEF--AAGAVLVAHNARFDTA-FLRAAAARCALPWPDAPVLCTVK 141

Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +ARR           L SL +  G   S +  H AL D+    DV   ++      N G 
Sbjct: 142 LARRVLGRDEAPSVRLASLARLLG--ASTQPTHRALDDARATVDVLHALI--ARVGNQGV 197

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
            +       E    +P++S  +R K
Sbjct: 198 HS-----LTELMDYLPDVSAGQRAK 217


>gi|312140182|ref|YP_004007518.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S]
 gi|311889521|emb|CBH48838.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S]
          Length = 577

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 13/210 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
               +   +V D+ETTG  S++D I EIGAV++             + P GR   P  ++
Sbjct: 22  TPLRETTFVVVDLETTGGSSESDAITEIGAVKVRGGEVLGE-LGTLVDP-GRAIPPYIVE 79

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT   ++  P   ++   F +F     A  +AHNA FDVGF+ A   R    P    
Sbjct: 80  LTGITTAMVRTAPRIDTVLPAFLEFAG--GAVLVAHNAGFDVGFLKAAAARQGL-PWPKF 136

Query: 122 RIIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +++ T+ +ARR         +        +       H AL D+    DV   ++  G  
Sbjct: 137 QVLCTVKLARRVLGRDEAPSVKLSALAALLGADTTPTHRALDDARATVDVLHALI--GRV 194

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
            N G  +       E    +P ++  +R K
Sbjct: 195 GNQGVHS-----LPELLDYLPRVTSEQRAK 219


>gi|212635482|ref|YP_002312007.1| DNA polymerase III [Shewanella piezotolerans WP3]
 gi|212556966|gb|ACJ29420.1| DNA polymerase III [Shewanella piezotolerans WP3]
          Length = 222

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           IV D ETTGL   + DR IEIGAV+ L +      FQ  + P G + S       GI+++
Sbjct: 25  IVLDFETTGLSPNQGDRAIEIGAVK-LQHGIVVDRFQELMNP-GFRISGFIESYTGISNQ 82

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +      +   F DF  + N   +AHNA FD  F++AEL  I ++         ++ 
Sbjct: 83  MLNNAAPCEEVMERFADFIADYN--MVAHNASFDQRFLDAELNSIGREY--RGEFACSML 138

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IARR +     + L SL     I       H AL DS + +D+++ M+
Sbjct: 139 IARRLYQEAPNHKLGSLINYKQIK-HDGVFHRALADSEMTADLWLVML 185


>gi|253577523|ref|ZP_04854836.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843063|gb|EES71098.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 951

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 9/215 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  V D ETTG +  +D II++G   +      ++ ++ F+ P G    P    L GIT
Sbjct: 1   MKYAVLDFETTG-NQSSDDIIQVGLAIIEPDRSISQVYRSFVKP-GVPIPPFITGLTGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE +KD P    +  E     N  +   + HN  FD  ++ + L +    P    RI+DT
Sbjct: 59  DEDVKDAPELDEVMMEMVPLLN--DVVLVGHNVAFDFNYLQSALDKTGYLPF-TGRILDT 115

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-FG 184
           +   +   PS +   L  +   +   + H   H A  D+   + +++K +    ++    
Sbjct: 116 MDFLKILFPSLTSYQLGMVAAEF--EVEHERPHQADSDALATALIFLKCLEECDRLPLLT 173

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +   D F  E+         + ++K      +++
Sbjct: 174 LQRLADLFAGEDSDLGWFFDAMVQEKEREALPSED 208


>gi|171315543|ref|ZP_02904779.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171099380|gb|EDT44118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 375

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 10/170 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +  D+ETTG  S   RI EIG VE+        T+   + P G+   P   +L GI
Sbjct: 12  EQPLVFVDLETTGGSSAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQSIPPFIQQLTGI 68

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +DE ++D PSF+S+    ++  +     ++AHNA FD GF+ AE  R          ++ 
Sbjct: 69  SDEMVRDAPSFASLAPTLFERLD--GKLFVAHNASFDRGFLRAEFDRAGIAFNPD--VLC 124

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           T+ ++R   P   R+ L++L +R+G+  +  ++H AL D+ LL   + ++
Sbjct: 125 TVRLSRALFPREARHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172


>gi|315146656|gb|EFT90672.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4244]
          Length = 929

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + +       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQEGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|46198769|ref|YP_004436.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus
           HB27]
 gi|55980782|ref|YP_144079.1| DNA polymerase III subunit epsilon-like protein [Thermus
           thermophilus HB8]
 gi|46196392|gb|AAS80809.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus
           HB27]
 gi|55772195|dbj|BAD70636.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus
           HB8]
          Length = 624

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 14/175 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEAL 60
           +  +++    FD+ETTGLD + D ++ +  V +L      +  F+  + P GR  SP A 
Sbjct: 433 VPLDQLLYTAFDLETTGLDPEQDAVVALAGVHVLGRRVLRQEVFEALVNP-GRPISPAAT 491

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HG+T E L+DKP   ++   F  F   Q+   +AHN  FD+ F+    +R   D    
Sbjct: 492 AVHGLTAEMLRDKPPLEAVLPAFRAFV--QDTVLVAHNGAFDLAFL----RRAGLDQPPL 545

Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +    +A+   P  +   L +L  R+G+  + R  H AL D+ + ++V+++M
Sbjct: 546 LDTL---LLAQLLFPDLKDYRLEALAHRFGVPATGR--HTALGDALMTAEVFVRM 595


>gi|325128513|gb|EGC51390.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis N1568]
          Length = 470

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+IE+  V+          +   + P  +        L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVIEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    +AHN++FD  F+  E  R+      P+  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA--LCS 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|256961321|ref|ZP_05565492.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|293383606|ref|ZP_06629516.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           R712]
 gi|293387281|ref|ZP_06631838.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           S613]
 gi|312906156|ref|ZP_07765168.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           DAPTO 512]
 gi|312909501|ref|ZP_07768356.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis DAPTO 516]
 gi|256951817|gb|EEU68449.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|291079118|gb|EFE16482.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           R712]
 gi|291083318|gb|EFE20281.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           S613]
 gi|310627802|gb|EFQ11085.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           DAPTO 512]
 gi|311290174|gb|EFQ68730.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis DAPTO 516]
          Length = 929

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 8/181 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+K    V D+ETTG D  +DRII+ G V + +       F   + PN +    +   L 
Sbjct: 8   KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQEGKIIAN-FATDVNPN-QVVPKQIQSLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++  ++  P F  +    + +   ++  ++AHN  FD  F+  EL R    PL     
Sbjct: 66  GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P+ ++  L+ L +  G  +SH + H A  D+ + +++ + +      + 
Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180

Query: 183 F 183
            
Sbjct: 181 L 181


>gi|297625374|ref|YP_003687137.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921139|emb|CBL55686.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 203

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 12/206 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    + DRIIEIG V L      +  +   + P        A ++H IT 
Sbjct: 4   YAVLDLETTGFSPARGDRIIEIGLVRLDPQGHVDDEWSTLVNPRRTV---RATRVHHITS 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126
             +   P+ + +     D   ++    +AHN+ FDVGF+ AEL+      P +P   + T
Sbjct: 61  ADVAAAPTMAELAPGLVDKLRDR--VVVAHNSSFDVGFLTAELRTAGMTIPPEPIPSVCT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-IKMMVGGSQINFGF 185
           +  + R   +    L   C+  G+++  R  H AL D+   ++++   +   G ++ +  
Sbjct: 119 MRQSTRFLHARSRRLVDCCEAAGVSL--RDAHSALGDARATAELFGHYLRAAGGELPWQD 176

Query: 186 KTNEDRFFKEEKK--TVPNISLLKRD 209
             +  R +   +     P   L++R 
Sbjct: 177 VVDRARRYPWPQALFVEPQTHLVQRP 202


>gi|302387397|ref|YP_003823219.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
           WM1]
 gi|302198025|gb|ADL05596.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
           WM1]
          Length = 222

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG+    D I+EI A+++  +          + P G      A +++GITD+
Sbjct: 18  YVVFDLETTGISPAEDSILEISAIKVKGHEPVAE-LNTLVNP-GTHIPAGATRINGITDD 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +K  P    +  +F  F   +    + HN   FD+ F+    Q +    + P+  +DTL
Sbjct: 76  MVKAAPGLKEVLPDFLSFI--EGEILVGHNIQSFDLLFLYRAAQELFGKEV-PNDYVDTL 132

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +A+   P   R+ L  +   + I       H AL D  +    Y +M
Sbjct: 133 FMAKTTLPQLGRHRLTDISAYFHINTEG--AHRALSDCVMNQKCYEQM 178


>gi|283796625|ref|ZP_06345778.1| DNA polymerase III PolC-type [Clostridium sp. M62/1]
 gi|291076048|gb|EFE13412.1| DNA polymerase III PolC-type [Clostridium sp. M62/1]
          Length = 251

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 94/220 (42%), Gaps = 21/220 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D+ETTGLD K D+IIE+GA  L++  K  R     + P+ R+ S     L GIT  
Sbjct: 18  YAAIDLETTGLDPKRDKIIEVGAC-LVEQGKVKRELSFLINPH-REISERVELLTGITGR 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P    +  E   F  E     + H+  FD  F+                 IDTLS
Sbjct: 76  MVEHAPGIEEVIGEIAAFVGE--LPLLGHHVIFDYSFLKHAAVNAGLPFEKNG--IDTLS 131

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           + RR   P  + +L++ C  + I     + H AL D+     +Y  +       +  F+ 
Sbjct: 132 LCRRFMPPEEKKNLSAACGWFQIPRE--TAHRALADAKAAHLLYQSL------RDCHFQE 183

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
           NE+ F  +     P I  +KR++P   R  KE L E  K 
Sbjct: 184 NEEAFAAK-----PLIYKVKREQPASKR-QKEGLRELAKY 217


>gi|182439459|ref|YP_001827178.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780122|ref|ZP_08239387.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|178467975|dbj|BAG22495.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326660455|gb|EGE45301.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 341

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 87/212 (41%), Gaps = 12/212 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L         +   + P      P  + +HG+T +
Sbjct: 19  YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNPER---DPGPVWIHGLTSD 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  +  E      ++    +AHNA FD   I  E  R +       + + T++
Sbjct: 75  VLEGAPLFPEVAEELSARLADR--VLVAHNAAFDWSMIAREYARASVVA-PVEQRLCTIA 131

Query: 129 IAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+  + P   + L SL   +G+    +  H AL D+ +L++ +   +   ++       
Sbjct: 132 LAKELRLPLPNHKLASLAAHFGVV--QQRAHHALDDARVLAEAFRPSLHAAARGGVRLPL 189

Query: 188 NEDRFFKE--EKKTVPNISLLKRDKPLFTRIT 217
            E R   E  +    P +      +P   R +
Sbjct: 190 LECRPLTEWSDSPVTPRVGYQPSRQPNSWRPS 221


>gi|218289182|ref|ZP_03493418.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240765|gb|EED07944.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 952

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 8/180 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I+ D ETTGL+ +   I+EIGA+ +    +   TF   + P  R    E  +L G++
Sbjct: 1   MEWIIVDFETTGLEPERAEILEIGALRVR-GGEIVDTFHTLVRPE-RPIPDEITRLTGLS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  +   PS       F  F    +     H+  F+  F+     R    PL P   + T
Sbjct: 59  DTDVAGAPSEREALMRFATFAG--DTPMAGHHWAFERSFLRDRASRYGL-PLQPGDGLCT 115

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           L++AR   P    + L  L +R  +       H AL D+H    + +++     ++  G 
Sbjct: 116 LNLARILAPRLMSHRLEYLARRLCLRAE--ISHRALADAHTAHQLLMRLENKARRLPSGV 173


>gi|255038895|ref|YP_003089516.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
           18053]
 gi|254951651|gb|ACT96351.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
           18053]
          Length = 174

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 10/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG      RI EI AV   D ++    F   + P      P   +L GI +E
Sbjct: 2   YAIVDIETTGG-GGTSRITEI-AVFRHDGARIVDFFHSLINPEIY-IPPFITRLTGIDNE 58

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P+F  +          ++A ++AHNAKFD GFI  E   +  D      ++ T+ 
Sbjct: 59  MVKDAPTFYEVQDAVRAM--TRDAWFVAHNAKFDYGFIKREFGAL--DEYFQRDLLCTVQ 114

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           ++R+  P  +   L +LC+   I I +R  H A  D+     ++ K+++   Q
Sbjct: 115 LSRKIFPGLKSYSLGNLCESLEIMIENR--HRAHGDAEATVRLFEKLLLHDRQ 165


>gi|269956916|ref|YP_003326705.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305597|gb|ACZ31147.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 547

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 11/210 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL  + DR+IE+  + L    +T   +   L P        A  +HGITD 
Sbjct: 49  FAVVDVETTGLSPRYDRVIEVAILRLDTNGRTVDEWSTRLNPQRTV---GATWIHGITDA 105

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   PSF+ + ++         A ++ HNA+FD GF+ AEL R   D  +P+      +
Sbjct: 106 DVAHAPSFADVAAQVAQRL--TGAVFVGHNARFDAGFVLAELTRAGWDAPEPTIWCTQAA 163

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
                  +S   L  +    GI+++H   H AL D+   +     M+      + G    
Sbjct: 164 SHHWLPDASSRRLVDVAAAAGISLTH--AHSALGDARATA----AMLTRYIGASTGVDRL 217

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
           +D          P  +      P+   +  
Sbjct: 218 DDLAAVAAATAWPERAARTALGPVTIDVPP 247


>gi|189425539|ref|YP_001952716.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ]
 gi|189421798|gb|ACD96196.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ]
          Length = 168

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 90/171 (52%), Gaps = 9/171 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D ETTGL  +N  R+IEIGAV + +   T       +  +G   S  A ++HGI+
Sbjct: 3   RVIVVDTETTGLSVRNQGRVIEIGAVAVENGQITAE-LATLIN-SGTPISYGAYRVHGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ L  +P+   ++  F +F    N+  +AHNA FD  FIN EL  +     +P     T
Sbjct: 61  EQMLAGRPTPQEVWPWFLEFAG--NSPLVAHNAAFDRAFINHELHLLGMSLANP--WHCT 116

Query: 127 LSIARRKHPSS-RNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKMM 175
           + ++RRK P    + L ++ K  +G       +H AL D+ + + V+++++
Sbjct: 117 VRLSRRKLPRLMNHKLETVYKHLFGELPEEVQRHRALDDARMAARVWVELL 167


>gi|91795118|ref|YP_564769.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
 gi|91717120|gb|ABE57046.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
          Length = 204

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 11/182 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   N    +V D ETTGL     DR IEIGAV+L+D    + +FQ  + P  R NS   
Sbjct: 1   MTLANN--VVVLDFETTGLSPDMGDRAIEIGAVKLVDGQVVD-SFQALINPGQRVNS-FI 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +  GI+++ LKD P  + +  +F +F    N   +AHNA FD  F++AE          
Sbjct: 57  EQYTGISNQMLKDAPRSNVVMGQFTEFIAGFN--LVAHNASFDKKFLDAEFSANKLS--Y 112

Query: 120 PSRIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +   +L ++RR    +  + L +L + + +       H AL D+ + +++++  +   
Sbjct: 113 SGQFACSLLLSRRISQEAPNHKLGTLIQHHQLANDG-VFHRALADATMTANLWLHQVSLL 171

Query: 179 SQ 180
            Q
Sbjct: 172 QQ 173


>gi|320011539|gb|ADW06389.1| DNA polymerase III, epsilon subunit [Streptomyces flavogriseus ATCC
           33331]
          Length = 346

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 10/202 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L         +   + P      P  + +HG+T +
Sbjct: 32  YAVVDVETTGL-ARDDRIISAAVYRLDARGDVEDHWYTLVNPER---DPGPVWIHGLTSD 87

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  + +E  +    +    +AHNA FD   I  E  R         + + T++
Sbjct: 88  VLEGAPLFPQVAAELSERLAGR--VLVAHNAAFDWSMIAREYARA-AVTAPVEQRLCTIA 144

Query: 129 IAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+  + P   + L SL   +G+   H   H AL D+ +L++ +   +   ++       
Sbjct: 145 LAKELRLPLPNHKLESLAAHFGVVQQH--AHHALDDARVLAEAFRPSLHAAAKGGVRLPL 202

Query: 188 NEDRFFKEEKKTVPNISLLKRD 209
            E R   E   +        R 
Sbjct: 203 LECRPLTEWYDSPVTPRAGYRP 224


>gi|325676936|ref|ZP_08156608.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707]
 gi|325552236|gb|EGD21926.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707]
          Length = 577

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 87/210 (41%), Gaps = 13/210 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
               +   +V D+ETTG  S++D I EIGAV++             + P GR   P  ++
Sbjct: 22  TPLRETTFVVVDLETTGGSSESDAITEIGAVKVRGGEVLGE-LGTLVDP-GRAIPPYIVE 79

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT   ++  P   ++   F +F     A  +AHNA FDVGF+ A   R    P    
Sbjct: 80  LTGITTAMVRTAPRIDTVLPAFLEFAG--GAVLVAHNAGFDVGFLKAAAARQGL-PWPKF 136

Query: 122 RIIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +++ T+ +ARR         +        +       H AL D+    DV   ++  G  
Sbjct: 137 QVLCTVKLARRVLGRDEAPSVKLSALAALLGADTTPTHRALDDARATVDVLHALI--GRV 194

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
            N G  +       E    +P +S  +R K
Sbjct: 195 GNQGVHS-----LPELLDYLPRVSSEQRAK 219


>gi|295092491|emb|CBK78598.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium cf. saccharolyticum K10]
 gi|295115331|emb|CBL36178.1| exonuclease, DNA polymerase III, epsilon subunit family
           [butyrate-producing bacterium SM4/1]
          Length = 251

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 94/220 (42%), Gaps = 21/220 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D+ETTGLD K D+IIE+GA  L++  K  R     + P+ R+ S     L GIT  
Sbjct: 18  YAAIDLETTGLDPKRDKIIEVGAC-LVEQGKVKRELSFLINPH-REISERVELLTGITGR 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P    +  E   F  E     + H+  FD  F+                 IDTLS
Sbjct: 76  MVEHAPGIEEVIGEIAAFVGE--LPLLGHHVIFDYSFLKHAAVNAGLPFEKNG--IDTLS 131

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           + RR   P  + +L++ C  + I     + H AL D+     +Y  +       +  F+ 
Sbjct: 132 LCRRFMPPEEKKNLSAACGWFQIPRE--TAHRALSDAKAAHLLYQSL------RDCHFQE 183

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
           NE+ F  +     P I  +KR++P   R  KE L E  K 
Sbjct: 184 NEEAFAAK-----PLIYKVKREQPASKR-QKEGLRELAKY 217


>gi|197337514|ref|YP_002157585.1| DNA polymerase III epsilon subunit [Vibrio fischeri MJ11]
 gi|197314766|gb|ACH64215.1| DNA polymerase III epsilon subunit [Vibrio fischeri MJ11]
          Length = 212

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 9/169 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL   + DR IEIGAV+L +    +R FQ  + P G + S       GI++ 
Sbjct: 16  VVLDFETTGLSPNQGDRAIEIGAVKLENGVVVDR-FQGLMNP-GFRVSSFIENYTGISNR 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D  S   + +EF +F   Q    +AHNA FD  F++ EL  I ++         +L 
Sbjct: 74  MLADAASCDEVMNEFANFI--QGCNLVAHNASFDKRFLDGELALIQREY--DGDFACSLL 129

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++RR    +S + L  L   + I       H AL D+ + + +++ ++ 
Sbjct: 130 VSRRLTQEASSHKLGDLVAYHQIENDG-VFHRALADAEVTASLWLVLLE 177


>gi|237804887|ref|YP_002889041.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273187|emb|CAX10100.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 250

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 6/183 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+    +  +  D ETTGLD K DR+IE  A+    + +   + +  + P  R  S E+ 
Sbjct: 1   MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFT-FDEIIDSVEFLIHPE-RAVSAESQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K+H I+D  L+DKP F  +FS    FF E++   + H+  FD+  ++ E +R+ +  L  
Sbjct: 59  KIHKISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPK 117

Query: 121 SRI-IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               IDTL +A+    S  N L +L + + +   H+  H A+ D  +   V+  +     
Sbjct: 118 HHYVIDTLRLAKEYGDSPNNSLEALARHFNVP--HQGNHRAMKDVEMNVKVFKHLTKRFR 175

Query: 180 QIN 182
            ++
Sbjct: 176 TLS 178


>gi|239940309|ref|ZP_04692246.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 341

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 87/212 (41%), Gaps = 12/212 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L         +   + P      P  + +HG+T +
Sbjct: 19  YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNPER---DPGPVWIHGLTSD 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  +  E      ++    +AHNA FD   I  E  R +       + + T++
Sbjct: 75  VLEGAPLFPEVAEELSARLADR--VLVAHNAAFDWSMIAREYARASVVA-PVEQRLCTIA 131

Query: 129 IAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+  + P   + L SL   +G+    +  H AL D+ +L++ +   +   ++       
Sbjct: 132 LAKELRLPLPNHKLASLAAHFGVV--QQQAHHALDDARVLAEAFRPSLHAAARGGVRLPL 189

Query: 188 NEDRFFKE--EKKTVPNISLLKRDKPLFTRIT 217
            E R   E  +    P +      +P   R +
Sbjct: 190 LECRPLTEWSDSPVTPRVGYRAVRQPNSWRPS 221


>gi|261406087|ref|YP_003242328.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           Y412MC10]
 gi|261282550|gb|ACX64521.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           Y412MC10]
          Length = 958

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 8/178 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  V D ETTG +   D II++G   + +    +R +  ++ P G    P    L GI+
Sbjct: 1   MKFAVLDFETTG-NQSADEIIQVGLAIIEEDRSISRVYGTYVNP-GIPIPPFITGLTGIS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D PS   +  E     +  +   + HN  FD  F+   L R    P    RI+DT
Sbjct: 59  DSDVADAPSLEEMMMELVPMLD--DVVLVGHNVAFDFNFLQNALDRCGYLPFS-GRILDT 115

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +   +   PS     L  +   +G  + H   H A  D+   +   +K +    ++  
Sbjct: 116 MHFLKICFPSLPSYQLGMVSSHFG--LEHDRPHQADSDALATAYALLKCLEEIDELPL 171


>gi|239986791|ref|ZP_04707455.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           11379]
 gi|291443743|ref|ZP_06583133.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
 gi|291346690|gb|EFE73594.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 343

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 87/212 (41%), Gaps = 12/212 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L         +   + P      P  + +HG+T +
Sbjct: 21  YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNPER---DPGPVWIHGLTSD 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  +  E      ++    +AHNA FD   I  E  R +       + + T++
Sbjct: 77  VLEGAPLFPEVAEELSARLADR--VLVAHNAAFDWSMIAREYARASVVA-PVEQRLCTIA 133

Query: 129 IAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+  + P   + L SL   +G+    +  H AL D+ +L++ +   +   ++       
Sbjct: 134 LAKELRLPLPNHKLASLAAHFGVV--QQQAHHALDDARVLAEAFRPSLHAAARGGVRLPL 191

Query: 188 NEDRFFKE--EKKTVPNISLLKRDKPLFTRIT 217
            E R   E  +    P +      +P   R +
Sbjct: 192 LECRPLTEWSDSPVTPRVGYRAVRQPNSWRPS 223


>gi|291456364|ref|ZP_06595754.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Bifidobacterium breve DSM 20213]
 gi|291381641|gb|EFE89159.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Bifidobacterium breve DSM 20213]
          Length = 235

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 11/172 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG       I EIGAV +      ++ FQ  + P       +   L GITD 
Sbjct: 34  YVALDLETTGFYPNRCAITEIGAVRVRGGRVVDQ-FQQLINPLC-PIPRQITALTGITDA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            + D      +  +F  +  + NA       + HN  FD+ F++   + I          
Sbjct: 92  MVADHDPIDGVLPQFISWLADSNAAAETEPIVGHNVSFDLRFLDYNTRHIAGCGFA-CAD 150

Query: 124 IDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            DT+ I+R   P  S + L  L  R+GI  +   +H AL D+      +  M
Sbjct: 151 YDTMQISRALFPKQSHHRLADLIVRFGI--ADNEEHRALSDAIQTQQCFEWM 200


>gi|282881940|ref|ZP_06290585.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
 gi|281298215|gb|EFA90666.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
          Length = 298

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 18/177 (10%)

Query: 1   MIRKNKMRKI-----VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M  KN  ++I     V D ETTGL S  D IIEIG +++ D    +R +   + P+  + 
Sbjct: 1   MANKNYTKQIINDYCVLDTETTGLSSYYDEIIEIGILKVRDNKIVDR-YSQLIKPD-YEI 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
                 L GIT+E +K+ P+ + + S+   F  +     I HN  FD+ F+NA       
Sbjct: 59  DSFITSLTGITNEMVKEMPAINFVMSDVLSFIGKD--VIIGHNTSFDIRFLNA-----GF 111

Query: 116 DPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +    ++ +DT+  AR+  P  ++  L+ L    G++ +    H ++ D     ++Y
Sbjct: 112 NIELDNKYMDTMQFARKLFPELKHHRLSDLTSYLGLSNNE---HRSIADCIATKELY 165


>gi|315127113|ref|YP_004069116.1| hypothetical protein PSM_A2044 [Pseudoalteromonas sp. SM9913]
 gi|315015627|gb|ADT68965.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 718

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 9/156 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG     +RI EIG V++      + T+   + P  R        L GI D 
Sbjct: 554 YSVVDIETTGGLKGGNRITEIGIVKIKQGEIVD-TWTTLINPE-RPIPRFITSLTGINDA 611

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P FS I +   +  +   + ++AHN  FD GFI  EL+RI  +   P   + T+ 
Sbjct: 612 MVSNAPIFSEIAAPLLNQLS--GSIFVAHNVNFDYGFIKKELERIGINFKMP--KLCTVV 667

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLD 163
            +R+     +   L +L   + + +++   H AL D
Sbjct: 668 ESRKAFKGLKSYSLGNLSAHFNLDLTNH--HRALDD 701


>gi|308049989|ref|YP_003913555.1| RNAse T [Ferrimonas balearica DSM 9799]
 gi|307632179|gb|ADN76481.1| RNAse T [Ferrimonas balearica DSM 9799]
          Length = 222

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 21/200 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53
           +  N+ R    +V D+ET G +++ D ++EI AV L      + + ++T    + P  G 
Sbjct: 9   LLSNRFRGYYPVVIDVETAGFNAQTDALLEIAAVTLKMDEQGWLQPDQTIHFHVAPFEGA 68

Query: 54  KNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVG 104
              P AL+ +GITD F  L+   S     SE +              +  +AHNA FD  
Sbjct: 69  NLEPAALEFNGITDPFSALRGAVSEREALSEIFKLVRKGQKAAGCNRSIIVAHNATFDQS 128

Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+NA  +R  + + P  P    DT +++       +  L   C+  GI   ++  H AL 
Sbjct: 129 FVNAASERTKMKRVPFHPFGTFDTAALSGLAL--GQTVLAKACRAAGIPFDNKEAHSALY 186

Query: 163 DSHLLSDVYIKMMVGGSQIN 182
           D+   ++++  ++     + 
Sbjct: 187 DTQRTAELFCYIVNRWKALG 206


>gi|227873963|ref|ZP_03992179.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268]
 gi|227840171|gb|EEJ50585.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268]
          Length = 178

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 9/174 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R IVFD+ET   + KN+RI  IG + +++  K ++ F   + P         +KL GI+ 
Sbjct: 3   RFIVFDVETP--NRKNNRISAIG-ITVVEEGKISKEFYSLVNPET-NFDYFNVKLTGISK 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +KD P+F  ++ +    F++     +AHNA FD+  +   L     D    +R + T+
Sbjct: 59  ASVKDAPTFPELWQQIEPLFSDGM--LVAHNASFDMNVLKNCLLDYEIDWKPYARYLCTV 116

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            + R   P   + LN +C+ +GI++ H   H A  DSH  +++ ++ +  G+++
Sbjct: 117 KMGRSLFPDRSHKLNMVCEDFGISLQH---HRADSDSHACAEILLRYLEAGAEV 167


>gi|166154751|ref|YP_001654869.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu]
 gi|166155626|ref|YP_001653881.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336025|ref|ZP_07224269.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1]
 gi|165930739|emb|CAP04236.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu]
 gi|165931614|emb|CAP07190.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 250

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 6/183 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+    +  +  D ETTGLD K DR+IE  A+    + +   + +  + P  R  S E+ 
Sbjct: 1   MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFT-FDEIIDSVEFLIHPE-RAVSAESQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K+H I+D  L+DKP F  +FS    FF E++   + H+  FD+  ++ E +R+ +  L  
Sbjct: 59  KIHKISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPK 117

Query: 121 SRI-IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               IDTL +A+    S  N L +L + + +   H+  H A+ D  +   V+  +     
Sbjct: 118 HHYVIDTLRLAKEYGDSPNNSLEALARHFNVP--HQGNHRAMKDVEMNVKVFKHLTKRFR 175

Query: 180 QIN 182
            ++
Sbjct: 176 TLS 178


>gi|149372989|ref|ZP_01891945.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
 gi|149354349|gb|EDM42916.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
          Length = 472

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 10/198 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  V D+ETTG      R+ EI  + + +    +  +   + P           L GITD
Sbjct: 7   KFTVIDVETTGG-VGQGRMTEICIITVENMEIVD-VWSSLINPEIY-IPQHITALTGITD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + D P F  + +   +    ++A ++AHN  FD GF+  E   I        + + T+
Sbjct: 64  QMVTDAPRFCDVAAIIEE--KTRDAIFVAHNVNFDYGFLKKEFDLIGASF--SRKKLCTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            ++R+  P      L+ LC+  GI++     H A  D+   + ++++++   S  NF   
Sbjct: 120 RLSRKLIPGLPSYSLSKLCRSIGISLLD--AHRAEADTRATTTLFLQLLEKDSVANFEVF 177

Query: 187 TNEDRFFKEEKKTVPNIS 204
            N       E    P+I+
Sbjct: 178 LNFLNKSSREATLPPHIN 195


>gi|308235755|ref|ZP_07666492.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14018]
          Length = 301

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 13/164 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTGL +  D IIEIG + + +    +R +   + P+  +       L GIT++
Sbjct: 16  YCVLDTETTGLSAYYDEIIEIGILRVRNNEIVDR-YDQLIKPSI-EVDGFITALTGITND 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D PS SS+ ++   F +E     + HN  FD+ F+N             ++ +DT+ 
Sbjct: 74  MLEDMPSISSVKNDVLSFISED--IILGHNTSFDMRFLNE-----GFKEQLSNQYMDTMQ 126

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            AR+ +P  ++  L+ L    G+   H ++H AL D     ++Y
Sbjct: 127 FARKLYPELKHHRLSDLTDYLGL---HNNEHRALADCIATKELY 167


>gi|313673170|ref|YP_004051281.1| DNA polymerase iii, epsilon subunit [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939926|gb|ADR19118.1| DNA polymerase III, epsilon subunit [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 226

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 95/186 (51%), Gaps = 12/186 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTGLD    +II + AV++  +   +  + VF+ P G+   PE++K HGITDE
Sbjct: 44  FCVVDTETTGLDINTAKIINLAAVKIKGFKIID-YYNVFINP-GKSIDPESIKWHGITDE 101

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KDKP    +  EF  F  +  +  + H+ KFDV  I+ EL       L   + +DT+ 
Sbjct: 102 MVKDKPFVVEVMPEFVKFIRK--SVIVGHHIKFDVDMISKELMETFGCSL-KQKCLDTMF 158

Query: 129 IARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           I  R      +   L+ L   Y +  + R  H AL D+   ++V+ KM++   QI+  FK
Sbjct: 159 IYTRGIAKKNDHVGLDFLLDLYKVRCNGR--HTALGDAMATAEVFNKMVM---QISDRFK 213

Query: 187 TNEDRF 192
           T  D +
Sbjct: 214 TVRDLY 219


>gi|124265242|ref|YP_001019246.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
 gi|124258017|gb|ABM93011.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
          Length = 208

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 7/168 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTG+   +  R  EI AV +       R +Q  +  +G    P   +L GI++
Sbjct: 4   IAVIDFETTGISPGQGARATEIAAVLVRGGQIVGR-YQSLMN-SGAWVPPFIEQLTGISN 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L+  P    +  E  DF        +AHNA FD GF  AE  R   D         TL
Sbjct: 62  RMLERAPPAERVMREVLDF--TAGCPLVAHNAAFDRGFWQAERARAGCDEDAAHAFACTL 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +ARR +P    + L +L K + +    R  H AL D+   + + ++M
Sbjct: 120 LLARRLYPEAPNHRLGTLAKLHALPDGGR-AHRALADAETAAHLLLRM 166


>gi|315612858|ref|ZP_07887769.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sanguinis ATCC 49296]
 gi|315314968|gb|EFU63009.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sanguinis ATCC 49296]
          Length = 830

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 105/238 (44%), Gaps = 13/238 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+     R +V D+E T   SK  +II++G V + +    ++ +   + P+         
Sbjct: 1   MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIIDQ-YATDVNPH-EPLDSHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+TD+ L   P FS +  + ++    ++  ++AHN +FD   +   L     +   P
Sbjct: 58  ELTGLTDQRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLLAEFLFFEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +DT+ +A+  +P   + +L  LC+  GI + H   H AL D+   +++ + M     
Sbjct: 116 --RVDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYMRQKLF 171

Query: 180 QINFG-FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236
           ++  G  ++  D       ++   I  + + + L +     EL  H   ++   K  +
Sbjct: 172 ELPKGLLESLLDLADNLLYESYLVIEEVYQQQSLLSSPDLMEL--HGLFLRKESKGLV 227


>gi|325288177|ref|YP_004263967.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489]
 gi|324323631|gb|ADY31096.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489]
          Length = 454

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ DIETTG     + I EI A+   D  K    F   + P  ++  P  +KL GI D+
Sbjct: 2   YVILDIETTGGKFNEEGITEI-AIHRFDGHKVVDKFISLVNPE-KEIQPFVVKLTGINDK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I     +    ++A  +AHNA+FD   +  E +R+  +     + + T++
Sbjct: 60  MLRTAPKFYEIAKRIVEI--TEDAVLVAHNAQFDYRILRTEFRRLGYNF--ERKTLCTVN 115

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +++   P      L  L +  GI +S R  H A  D+     ++  ++ 
Sbjct: 116 LSKELIPDKESYSLGKLVRSLGIPVSDR--HRANGDALATLQLFKLLLA 162


>gi|311114663|ref|YP_003985884.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019]
 gi|310946157|gb|ADP38861.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019]
          Length = 307

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 13/164 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTGL +  D IIEIG + + +    +R +   + P+  +       L GIT++
Sbjct: 22  YCVLDTETTGLSAYYDEIIEIGILRVRNNEIVDR-YDQLIKPSI-EVDGFITALTGITND 79

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D PS SS+ ++   F +E     + HN  FD+ F+N             ++ +DT+ 
Sbjct: 80  MLEDMPSISSVKNDVLSFISED--IILGHNTSFDMRFLNE-----GFKEQLSNQYMDTMQ 132

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            AR+ +P  ++  L+ L    G+   H ++H AL D     ++Y
Sbjct: 133 FARKLYPELKHHRLSDLTDYLGL---HNNEHRALADCIATKELY 173


>gi|315646467|ref|ZP_07899585.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex
           V453]
 gi|315278110|gb|EFU41430.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex
           V453]
          Length = 961

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  V D ETTG +   D II++G   + +    +R +  ++ P G    P    L GI+
Sbjct: 1   MKFAVLDFETTG-NQSADEIIQVGLAIIEEDRSISRVYGTYVNP-GIPIPPFITGLTGIS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D PS   +  E     +  +   + HN  FD  F+   L R    P    RI+DT
Sbjct: 59  DSDVADAPSLEEMMMELVPMLD--DVVLVGHNVAFDFNFLQNALDRCGYLPFS-GRILDT 115

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +   +   PS S   L  +   +G  + H   H A  D+   +   +K +    ++  
Sbjct: 116 MHFLKICFPSLSSYQLGMVSSHFG--LEHDRPHQADSDALATAYALLKCLEEIDELPL 171


>gi|297161567|gb|ADI11279.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
           BCW-1]
          Length = 324

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 82/210 (39%), Gaps = 10/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+     +L         +   + P      P  + +HG+T +
Sbjct: 22  YAVVDVETTGL-ARDDRIVSAAVYQLDARGAVQDHWYTLVNPQR---DPGPVWIHGLTSD 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P FS I  E     + +    +AHNA FD   +  E  R         + + T++
Sbjct: 78  TLADAPLFSEIADELAQHLDGR--VLVAHNAVFDWSMLAREYARAG-SAAPVRQRLCTIA 134

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +++    P   + L SL   YG+       H AL D+ +L++ +   +   +        
Sbjct: 135 LSKELGLPLPNHKLESLAAHYGVV--QERAHHALDDARVLAETFRPSLHAAAAGGLRLPL 192

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
              +   E       I   +  +    R +
Sbjct: 193 LACQPLTEWSDAPRPIGYQRSYRATSWRAS 222


>gi|325524698|gb|EGD02688.1| putative DNA polymerase/helicase [Burkholderia sp. TJI49]
          Length = 374

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 10/170 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +  D+ETTG  S   RI EIG VE+        T+   + P G+   P   +L GI
Sbjct: 12  EQPLVFVDLETTGGSSVEHRITEIGVVEI--GPLGVSTWTSLVNP-GQSIPPFIQQLTGI 68

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++  ++D PSF+S+    ++  +     ++AHNA FD GF+ AE +R          ++ 
Sbjct: 69  SEAMVRDAPSFASLAPALFERLD--GKLFVAHNASFDRGFLRAEFERAGLAFNPD--VLC 124

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           T+ ++R   P  SR+ L++L +R+G+  +  ++H AL D+ LL   +  +
Sbjct: 125 TVRLSRALFPRESRHGLDALIERHGLVPA--ARHRALADADLLWQFWRHL 172


>gi|291561902|emb|CBL40706.1| exonuclease, DNA polymerase III, epsilon subunit family
           [butyrate-producing bacterium SS3/4]
          Length = 247

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 86/167 (51%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG+ +++++I EIG V+++D  +T  T+   + P+ R+     ++L GITD+
Sbjct: 9   YVALDLETTGIGARHEKITEIGMVKVIDG-ETTDTYHTMVNPH-REIPKRIVELTGITDD 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P    I  E   F   ++   + H   FD GF+      +N+        +DTL 
Sbjct: 67  MVKDAPGIEEILDEVLAF--TEDLPLLGHQIIFDYGFLVQAA--VNQKRKFEKYGVDTLK 122

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + R   P   + +L++ C  +   ++  + H AL D++   ++Y ++
Sbjct: 123 LCRYLMPGEEKKNLSAACAYF--EVTQDTAHRALSDAYAAHNLYQEL 167


>gi|260063099|ref|YP_003196179.1| hypothetical protein RB2501_15959 [Robiginitalea biformata
           HTCC2501]
 gi|88784668|gb|EAR15838.1| hypothetical protein RB2501_15959 [Robiginitalea biformata
           HTCC2501]
          Length = 375

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 9/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V DIETTG     + I EI A+   D  +   TF   + P  R   P   KL GI 
Sbjct: 1   MTYAVLDIETTGGKFDEEGITEI-AIHRFDGHEVVDTFISLINPE-RPIQPYVQKLTGID 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + ++  P F  +     +    +++  +AHNA+FD   +  E +R+  +     + + T
Sbjct: 59  PKMVQTAPRFHQVAKRIVEI--TRDSVLVAHNAQFDYRILRTEFRRLGYNF--ERKTLCT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +++R  P    + L  L +  GI +S+R  H A  D+     +   ++
Sbjct: 115 VDLSQRLIPDAESHSLGKLVRSLGIPVSNR--HRANGDALATLKLLQHLL 162


>gi|146293210|ref|YP_001183634.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32]
 gi|145564900|gb|ABP75835.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32]
          Length = 212

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 9/201 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL   +  R IEIGAV + +   T R F   + P G + S       GI+++
Sbjct: 14  VVLDFETSGLSPNQGARAIEIGAVLIENGVITQR-FSELMDP-GFRISSFIEDYTGISNQ 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++      + + F DF  +     +AHNA FD  F++AE   I+ +     +   +L 
Sbjct: 72  MLRNAAPCHEVMARFADFIGDN--HLVAHNAAFDQRFLDAEFAHIHHEY--QGQFACSLL 127

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +ARR +P + N   +   RY    ++ + H AL D+ +   +++ M+    Q +F   + 
Sbjct: 128 LARRLYPLASNHQLATLVRYKQLPNNGTFHRALADAEMTGHLWLAMLADL-QRDFAITSP 186

Query: 189 EDRFFKE-EKKTVPNISLLKR 208
                ++  +KT  +++   R
Sbjct: 187 PFSLMQKITQKTKADVAKFIR 207


>gi|291450661|ref|ZP_06590051.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
 gi|291353610|gb|EFE80512.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 345

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 84/202 (41%), Gaps = 12/202 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+  G  +L    +    +   + P      P  + +HG+T  
Sbjct: 40  YAVVDVETTGL-ARDDRIVSAGVYQLDALGRVEDHWYTLVNPER---DPGPVWIHGLTTG 95

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD P F  I  E      ++    +AHNA FD   +  E  R  +      R + T++
Sbjct: 96  VLKDAPLFKDISDELSARLADR--VLVAHNAAFDWSMLAREYARAERVAPVRQR-LCTIA 152

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +++    P   + L SL   +G+       H AL D+ +L++ +   +V  +        
Sbjct: 153 LSKELGLPLPNHKLESLAAHFGVV--QERAHHALDDARVLAEAFRPSLVAAAGGGVRLPL 210

Query: 188 NEDRFFKE--EKKTVPNISLLK 207
            E R   E  E    P I    
Sbjct: 211 LECRPLTEWSEPPATPRIGRQP 232


>gi|76789273|ref|YP_328359.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13]
 gi|255311354|ref|ZP_05353924.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276]
 gi|255317655|ref|ZP_05358901.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s]
 gi|255348913|ref|ZP_05380920.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70]
 gi|255503453|ref|ZP_05381843.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s]
 gi|255507132|ref|ZP_05382771.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923]
 gi|76167803|gb|AAX50811.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13]
 gi|289525581|emb|CBJ15059.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2]
 gi|296435141|gb|ADH17319.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150]
 gi|296436069|gb|ADH18243.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768]
 gi|296436997|gb|ADH19167.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222]
 gi|296437930|gb|ADH20091.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074]
 gi|296438861|gb|ADH21014.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023]
 gi|297140430|gb|ADH97188.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301]
          Length = 250

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 6/183 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+    +  +  D ETTGLD K DR+IE  A+    + +   + +  + P  R  S E+ 
Sbjct: 1   MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFT-FDEIIDSVEFLIHPE-RAVSAESQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K+H I+D  L+DKP F  +FS    FF E++   + H+  FD+  ++ E +R+ +  L  
Sbjct: 59  KIHKISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPK 117

Query: 121 SRI-IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               IDTL +A+    S  N L +L + + +   H+  H A+ D  +   V+  +     
Sbjct: 118 HHYVIDTLRLAKEYGDSPNNSLEALARHFNVP--HQGNHRAMKDVEMNVKVFKHLTKRFR 175

Query: 180 QIN 182
            ++
Sbjct: 176 TLS 178


>gi|77360920|ref|YP_340495.1| hypothetical protein PSHAa1996 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875831|emb|CAI87052.1| conserved protein of unknown function; putative enzyme
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 730

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     ++I EIG V+ + + K   T+   + P  R        L GI+D 
Sbjct: 567 YSVVDLETTGALKGGNKITEIGLVK-VQHGKVIDTWTTLVNPQ-RHIPGFITSLTGISDS 624

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P F+ I            + ++AHN  FD GFI  E +        P   + T+ 
Sbjct: 625 MVSNAPVFADIVKPLMAKLA--GSIFVAHNVNFDYGFIKKECEMAKVPFKMP--KLCTVV 680

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +R+     +   L +L K + + ++  S H AL D+   + + + +
Sbjct: 681 ESRKAFAGLKSYSLGNLSKHFNLNLT--SHHRALADATATAQLLLLI 725


>gi|160878305|ref|YP_001557273.1| DNA polymerase III, epsilon subunit [Clostridium phytofermentans
           ISDg]
 gi|160426971|gb|ABX40534.1| DNA polymerase III, epsilon subunit [Clostridium phytofermentans
           ISDg]
          Length = 235

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 9/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  DIE+TGL  + DRIIEI A+  +D  K    F+  + P G        +L GIT
Sbjct: 1   MNFLAIDIESTGLSPEKDRIIEIAAIRYIDG-KPKERFEKLINP-GCPLPERITELTGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ L    +   +  EF  F  E     + HN   D  FI     R+        + IDT
Sbjct: 59  EDMLAGAMTEREVIKEFLTFAGED--VLLGHNVSVDFSFIKTAADRLKIGY--ERQGIDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L ++R       + +L S+C+ YGI       H AL D+   + +Y K+
Sbjct: 115 LYLSRTLKSDLEKKNLESMCEHYGIIRE--CSHRALEDAIAAATLYQKL 161


>gi|15605265|ref|NP_220051.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           D/UW-3/CX]
 gi|3328974|gb|AAC68138.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX]
 gi|297748666|gb|ADI51212.1| Exonuclease family protein [Chlamydia trachomatis D-EC]
 gi|297749546|gb|ADI52224.1| Exonuclease family protein [Chlamydia trachomatis D-LC]
          Length = 250

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 6/183 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+    +  +  D ETTGLD K DR+IE  A+    + +   + +  + P  R  S E+ 
Sbjct: 1   MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFT-FDEIIDSVEFLIHPE-RAVSAESQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K+H I+D  L+DKP F  +FS    FF E++   + H+  FD+  ++ E +R+ +  L  
Sbjct: 59  KIHKISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPK 117

Query: 121 SRI-IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               IDTL +A+    S  N L +L + + +   H+  H A+ D  +   V+  +     
Sbjct: 118 HHYVIDTLRLAKGYGDSPNNSLEALARHFNVP--HQGNHRAMKDVEMNVKVFKHLTKRFR 175

Query: 180 QIN 182
            ++
Sbjct: 176 TLS 178


>gi|237802965|ref|YP_002888159.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231274199|emb|CAX10993.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 250

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 6/183 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+    +  +  D ETTGLD K DR+IE  A+    + +   + +  + P  R  S E+ 
Sbjct: 1   MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFT-FDEIIDSVEFLIHPE-RAVSAESQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K+H I+D  L+DKP F  +FS    FF E++   + H+  FD+  ++ E +R+ +  L  
Sbjct: 59  KIHKISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPK 117

Query: 121 SRI-IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               IDTL +A+    S  N L +L + + +   H+  H A+ D  +   V+  +     
Sbjct: 118 HHYVIDTLRLAKEYGDSPNNSLEALARHFNVP--HQGNHRAMKDVEMNVKVFKHLTKRFR 175

Query: 180 QIN 182
            ++
Sbjct: 176 TLS 178


>gi|161870374|ref|YP_001599545.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 053442]
 gi|161595927|gb|ABX73587.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 053442]
          Length = 187

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 93/187 (49%), Gaps = 11/187 (5%)

Query: 63  HGITDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           HG+T E L  K+ P F+ +  +  DF   + AE I HNAKFDVGF+N E +R+    ++ 
Sbjct: 2   HGLTIEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEE 59

Query: 121 --SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               + DTL++AR   P  +  L++LC R+ +  S R  HGAL+D  LL +VY+ M    
Sbjct: 60  LGCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQ 119

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
             +       E    K E K V +    +  K    R  + EL  H + +  LG+  IW 
Sbjct: 120 FDL-----MGEAAEEKMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIWR 174

Query: 239 RYISSNQ 245
           +    ++
Sbjct: 175 KEAVPSE 181


>gi|121635139|ref|YP_975384.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18]
 gi|120866845|emb|CAM10604.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18]
 gi|325132197|gb|EGC54893.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M6190]
 gi|325138130|gb|EGC60703.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis ES14902]
 gi|325198587|gb|ADY94043.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis G2136]
          Length = 470

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +      + L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVVGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    +AHN++FD  F+  E  R+      P  ++ +
Sbjct: 85  DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSP--VLCS 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|116491013|ref|YP_810557.1| DNA polymerase III, alpha subunit ( type) [Oenococcus oeni PSU-1]
 gi|116091738|gb|ABJ56892.1| DNA polymerase III, alpha subunit (gram-positive type) [Oenococcus
           oeni PSU-1]
          Length = 1437

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 98/184 (53%), Gaps = 10/184 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             +FDIETTGL + ND+II++ AV++ +      TF  F+ P G   S + + L GITD+
Sbjct: 410 YTIFDIETTGLSAVNDKIIQLSAVKMKNG-VVLDTFDQFINP-GFPLSEQTINLTGITDD 467

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +K+    + +   F  F+         HN  KFD GF+N  L  ++K P   + +IDTL
Sbjct: 468 LVKNSKPEAEVLKMFQQFYAR--TILAGHNVIKFDYGFVNHALA-VHKLPKINTLVIDTL 524

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           ++AR  +P+  R  L+ L K++ + + H   H A+ DS     + + + +  ++ N+G  
Sbjct: 525 NLARWLYPNFGRYTLDFLSKKFSVNLEHH--HRAIDDSTATGML-LHIFLKEAEENYGVV 581

Query: 187 TNED 190
            +E 
Sbjct: 582 YDEQ 585


>gi|291276271|ref|YP_003516043.1| DNA polymerase III subunit epsilon [Helicobacter mustelae 12198]
 gi|290963465|emb|CBG39295.1| Putative dna polymerase III epsilon subunit [Helicobacter mustelae
           12198]
          Length = 247

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 8/163 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               DIETTG    +  IIEIGA++       + TF+  +    +       +L GI   
Sbjct: 67  FCFVDIETTGSKPNHSSIIEIGAIKYHGGEIID-TFETLV--FSQSVPENITELTGIDAG 123

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D PS   +   F  F    N+ ++AHN  FD GFI+  L R N +P   +  + T+ 
Sbjct: 124 MLADAPSEREVLQRFRKFLG--NSVFVAHNVVFDYGFISDRLLRYN-EPYLLNPRLCTVE 180

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +ARR   S+R  L  L    GI I    +H AL D+ +   V+
Sbjct: 181 LARRGILSARYSLGHLNAFLGIGID--KQHRALSDAFICLKVF 221


>gi|302533719|ref|ZP_07286061.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
 gi|302442614|gb|EFL14430.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
          Length = 332

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 12/198 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+      L         +   + P   +  P    +HG+T  
Sbjct: 27  YAVVDVETTGL-ARDDRIVSAAVYRLDAQGNVEDHWYTLVNP---RRDPGPTWIHGLTSA 82

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P F+ I  EF     ++    +AHNA FD   I  E  R +       + + T++
Sbjct: 83  MLQDAPLFADIAEEFAGRLADR--VLVAHNAIFDWQMIAREYARAS-ATAPVRQRLCTIA 139

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +++    P   + L SL   YG+    +  H AL D+ +L++ +   +   ++       
Sbjct: 140 LSKELNLPLPNHKLESLAAHYGVV--QQRAHHALDDARVLAEAFRPSLHAAARDGVRLPL 197

Query: 188 NEDRFFKE--EKKTVPNI 203
            E R   E  +    P +
Sbjct: 198 LECRPLTEWSDSPATPRV 215


>gi|270290279|ref|ZP_06196504.1| DnaQ family exonuclease/DinG family helicase [Pediococcus
           acidilactici 7_4]
 gi|270281060|gb|EFA26893.1| DnaQ family exonuclease/DinG family helicase [Pediococcus
           acidilactici 7_4]
          Length = 927

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 11/212 (5%)

Query: 6   KMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K R  V D+ETTG    +  RII+IG    ++  +   T+Q  + P          +L G
Sbjct: 3   KTRYAVVDLETTGTGSVEESRIIQIGC-AFIEGDQITETYQTKINPQ-MTIPKRISRLTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD+ ++  P F+ +  + +         ++AHN  FD  F+N EL R     LD  + I
Sbjct: 61  ITDQQVRQAPKFADVADKIYQKLA--GTVFVAHNVNFDFPFLNRELVRSGYPELDL-KAI 117

Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           DT+++++     +R   L  L     I   H   H A  D+   + +++K+    S++  
Sbjct: 118 DTVTLSQVLFSRTRGYRLRDLTNYLHIE--HDDPHSADSDAVATAHLFLKIKAALSELP- 174

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
              T E      ++  +   ++L+       R
Sbjct: 175 -IVTLEQLVKLGDQLPLQTATILEAALQKSKR 205


>gi|89898431|ref|YP_515541.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56]
 gi|89331803|dbj|BAE81396.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56]
          Length = 228

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 90/216 (41%), Gaps = 16/216 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG     DRIIEI A      + T  +F  ++ P       EA K+HGIT   
Sbjct: 5   IFYDTETTGTQIDKDRIIEIAAF----NNVTKESFVTYVNPKI-PIPEEASKIHGITTST 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLS 128
           +   P F   + +F DF   + A  +AHN   FD   +  E +R + +PL   R ID+L 
Sbjct: 60  VASAPDFPEAYKQFRDFCGNE-AVLVAHNNDGFDFPLLEKECRRHSLEPL-TLRTIDSLK 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            A++  P   +++L  L + YG   +    H AL D   L DV+  ++   S        
Sbjct: 118 WAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLHDVFSALIGDLSAEQVLALM 175

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
            E    K  K     +   K      T +    +  
Sbjct: 176 EESCHPKTFK-----MPFGKYKGKPLTEVPASYIQW 206


>gi|332653359|ref|ZP_08419104.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Ruminococcaceae bacterium D16]
 gi|332518505|gb|EGJ48108.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Ruminococcaceae bacterium D16]
          Length = 1396

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 85/164 (51%), Gaps = 9/164 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FDIETTGLD + + IIEIGA  L +   T  TF  F+ P GR  SPE + L GITDE
Sbjct: 371 IVCFDIETTGLDKRREVIIEIGAAVLKNGEVT-ETFNTFVAP-GRILSPEIIHLTGITDE 428

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   PS       F DF  ++     AHNA+FD+GFI+   ++      +PS  ID+L 
Sbjct: 429 MLVGAPSQEEALRAFLDFVGDR--PLAAHNAEFDMGFISTGCRKYGIPFTNPS--IDSLI 484

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +A+   P   +  L+ + +   +   +   H A  D+  ++ + 
Sbjct: 485 LAQNLLPELGKYKLDIVAEYLQLPAFNH--HRASDDAATVAYML 526


>gi|304384907|ref|ZP_07367253.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
 gi|304329101|gb|EFL96321.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 927

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 11/212 (5%)

Query: 6   KMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K R  V D+ETTG    +  RII+IG    ++  +   T+Q  + P          +L G
Sbjct: 3   KTRYAVVDLETTGTGSVEESRIIQIGC-AFIEGDQITETYQTKINPQ-MTIPKRISRLTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD+ ++  P F+ +  + +         ++AHN  FD  F+N EL R     LD  + I
Sbjct: 61  ITDQQVRQAPKFADVADKIYQKLA--GTVFVAHNVNFDFPFLNRELVRSGYPELDL-KAI 117

Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           DT+++++     +R   L  L     I   H   H A  D+   + +++K+    S++  
Sbjct: 118 DTVTLSQVLFSRTRGYRLRDLTNYLHIE--HDDPHSADSDAVATAHLFLKIKAALSELP- 174

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
              T E      ++  +   ++L+       R
Sbjct: 175 -IVTLEQLVKLGDQLPLQTATILEAALQKSKR 205


>gi|34556664|ref|NP_906479.1| DNA polymerase III subunit epsilon [Wolinella succinogenes DSM
           1740]
 gi|34482378|emb|CAE09379.1| DNA POLYMERASE III EPSILON SUBUNIT DNAQ [Wolinella succinogenes]
          Length = 206

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + R  + D+ET G     D+IIEIGA+        + +F+ ++    ++      K+ GI
Sbjct: 13  EQRFCIVDVETNGSLPAKDQIIEIGAILYQGGKIID-SFESYV--FCKEVPEYITKITGI 69

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E LKD PS   + + F  F    +A ++AHNA FD GF+ A ++R   D L  +R + 
Sbjct: 70  TSEELKDAPSMKEVLTRFRLFLG--DAVFVAHNALFDYGFLGAMMKRSGMDRLH-NRKLC 126

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           T+ +AR+  P+ R  L+ L +   I       H A  D+     V+ + + 
Sbjct: 127 TIDLARKTIPADRYGLSFLNEFLEIHTE--VSHRAYADALTALRVFEESLR 175


>gi|254386412|ref|ZP_05001717.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
 gi|194345262|gb|EDX26228.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
          Length = 334

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 12/212 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL ++ DRI+      L         +   + P      P  + +HG+T +
Sbjct: 31  YAVVDVETTGL-AREDRIVSAAVYRLDAQGNVEDHWYTLVNPQR---DPGPVWIHGLTSD 86

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P F  I  EF     ++    +AHNA FD   I  E  R   +     + + T++
Sbjct: 87  MLQDAPLFKDIAGEFAGRLADR--VLVAHNAIFDWQMIAREYARAE-ETAPVRQRLCTIA 143

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +++    P   + L SL   +G+    +  H AL D+ +L++ +   +   ++       
Sbjct: 144 LSKELNLPLPNHKLESLAAHFGVV--QQRAHHALDDARVLAEAFRPSLHAAARDGVRLPL 201

Query: 188 NEDRFFKE--EKKTVPNISLLKRDKPLFTRIT 217
            E R   E  +    P I      +    R +
Sbjct: 202 LECRPLTEWSDSAVTPRIGYQSSYRGGGWRPS 233


>gi|284048335|ref|YP_003398674.1| DNA polymerase III, epsilon subunit [Acidaminococcus fermentans DSM
           20731]
 gi|283952556|gb|ADB47359.1| DNA polymerase III, epsilon subunit [Acidaminococcus fermentans DSM
           20731]
          Length = 223

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 11/171 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP----NGRKNSPEALKLHG 64
            +V D+ETTGLD + D+IIEIGA+E+    +  RTF   L P     G+  SP   +L G
Sbjct: 25  YVVVDLETTGLDPERDQIIEIGALEVTAGKR-GRTFSTLLQPRTPLEGQYVSPFITRLTG 83

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E L   P        F  F   + A  + +N  FD+GF+  + Q     PL  +  +
Sbjct: 84  ITNEMLAAAPQPRQALEAFGKFLGSRVA--VGYNVGFDMGFLQQQFQDQLYRPLA-NDWV 140

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           D L +A+   P    + LN+L   Y +   ++  H AL D       + K+
Sbjct: 141 DVLPMAQTLFPLWDHHRLNNLAAWYHVE--NKEAHRALSDVETTETCFRKL 189


>gi|224826335|ref|ZP_03699437.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224601436|gb|EEG07617.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 476

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 91/178 (51%), Gaps = 13/178 (7%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +    + D+ETTG     DRI EIG + L+D  +  R ++  + P G+   P    + GI
Sbjct: 4   EQPCAIVDLETTGGHITRDRITEIGIL-LIDGERIER-YETLVNP-GQPIPPFIENMTGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D  + + P F+++     +    Q    +AHNA+FD GF+  E +R     +  S ++ 
Sbjct: 61  SDAMVAEAPPFAALVETLLE--KLQGRLLLAHNARFDYGFLKNEFKRAGH--VFQSEVLC 116

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           T+ ++RR +P   ++ L+SL  R+GI ++ R  H A+ D+     VY  +    +++ 
Sbjct: 117 TVKLSRRLYPQHFKHSLDSLIARHGIVLADR--HRAMADALA---VYHFIEAATAELG 169


>gi|324995504|gb|EGC27416.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK678]
          Length = 814

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLSQAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAESLFWEGFDLLTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+  +P+  +  L +LC    I++ +   H AL D+   + +++K+
Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165


>gi|167628537|ref|YP_001679036.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1]
 gi|167591277|gb|ABZ83025.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1]
          Length = 255

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 17/188 (9%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAV---------ELLDYSKTNRTFQVFLCPNGRK 54
              +  +VFD ETTGL   ND +I +G V         E  + +   R F   + P+ R 
Sbjct: 57  LRDITFVVFDTETTGLSVPNDDVIALGGVALPPGGEGAEWTEDTGKVRVFDRLVNPH-RP 115

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
               A ++ GI D+ +  +P+   +  +F DF +   A  +AH   FDVGF++  L+ + 
Sbjct: 116 IPVLAREITGIDDDMVFSQPTIYPVLDDFLDFID--GAVLVAHGIAFDVGFLDKYLRPLR 173

Query: 115 KDPLDPSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                P  +IDT++++R   P  + + L++L   YGIT   R +H AL D+ + +D++  
Sbjct: 174 TKLYHP--VIDTITLSRVLEPFRAEHSLDALVADYGITP--RRRHSALGDAQMTADLFAA 229

Query: 174 MMVGGSQI 181
           M+V   ++
Sbjct: 230 MLVRLQKL 237


>gi|119900237|ref|YP_935450.1| putative DNA-directed polymerase III [Azoarcus sp. BH72]
 gi|119672650|emb|CAL96564.1| putative DNA-directed polymerase III [Azoarcus sp. BH72]
          Length = 474

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 82/163 (50%), Gaps = 9/163 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R ++ D+ETTG     DRI EI  +  ++  +  + ++  + P G    P    + GI D
Sbjct: 6   RYVLVDLETTGAHPLRDRITEIAILR-IERGQLVQRWESLINP-GVPIPPTIQGVTGIDD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P F+++        +  +  ++AHNA+FD GF+      + ++   P  ++ T+
Sbjct: 64  TMVAGAPDFAAVADTVAALLD--DCVFVAHNARFDYGFLKTAYAALGREFDAP--VLCTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            ++R  +P   R+ L+++ +R+G+     ++H A+ D+ +L  
Sbjct: 120 KLSRALYPDHHRHGLDAIIERHGLAC--GARHRAMGDTEVLWQ 160


>gi|329847967|ref|ZP_08262995.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Asticcacaulis biprosthecum C19]
 gi|328843030|gb|EGF92599.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Asticcacaulis biprosthecum C19]
          Length = 708

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG  + NDR+ EI AV++         +   + P  R+      +L GIT+E
Sbjct: 543 YVVVDVETTGGRAVNDRVTEIAAVKVRGGKIIAE-WSSLINPE-RRIPGYITQLTGITNE 600

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F+ I  +   F +   A ++AHN  FD  FI +E +R+ +     +  + T +
Sbjct: 601 MVAGAPKFAEIADDLAAFLS--GAVFVAHNVNFDHSFIASEYRRLERRF--HAPKLCTCA 656

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRS 156
             R+ +P      L  L K YGI + +  
Sbjct: 657 GMRKYYPGHGSYGLGPLSKEYGIRLENHH 685


>gi|304387160|ref|ZP_07369404.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC
           13091]
 gi|304338764|gb|EFM04874.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC
           13091]
 gi|325201850|gb|ADY97304.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M01-240149]
          Length = 470

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    +AHN++FD  F+  E  R+      P+  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA--LCS 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|254805232|ref|YP_003083453.1| putative DNA polymerase III subunit [Neisseria meningitidis
           alpha14]
 gi|254668774|emb|CBA06684.1| putative DNA polymerase III subunit [Neisseria meningitidis
           alpha14]
          Length = 461

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    +AHN++FD  F+  E  R+      P+  + +
Sbjct: 76  DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA--LCS 131

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 132 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173


>gi|161870321|ref|YP_001599491.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442]
 gi|161595874|gb|ABX73534.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442]
          Length = 461

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    +AHN++FD  F+  E  R+      P+  + +
Sbjct: 76  DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA--LCS 131

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 132 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173


>gi|329901259|ref|ZP_08272784.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549191|gb|EGF33783.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 462

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 94/188 (50%), Gaps = 12/188 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R    D+ETTG  +  DRI E+G VE+ +     R +   + P+ R        L GI++
Sbjct: 9   RLAFVDLETTGATAVIDRITEVGIVEVDEDG--VRHWSSLVNPH-RHIPEFIEGLTGISN 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P F  + +E       +   ++AHNA+FD GF+  E +R+  D      ++ T+
Sbjct: 66  AMVADAPGFDELAAEIHQRL--EGRIFLAHNARFDHGFLKNEFKRVGIDFRP--TVLCTV 121

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQINFG 184
            ++R+ +P  ++++L++L +R+ + ++ R  H AL D+ L+   +  +      +QIN  
Sbjct: 122 KLSRKLYPEFAKHNLDTLAERHQLQVTER--HRALGDAQLIWQFWETIHTTFPHAQINAA 179

Query: 185 FKTNEDRF 192
            K    R 
Sbjct: 180 IKELTARP 187


>gi|325136504|gb|EGC59108.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M0579]
          Length = 469

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 27  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 83

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 84  DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 139

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 140 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 181


>gi|325130506|gb|EGC53261.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis OX99.30304]
          Length = 470

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|319410698|emb|CBY91078.1| putative DnaQ-like exonuclease [Neisseria meningitidis WUE 2594]
          Length = 461

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 76  DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 132 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173


>gi|308389143|gb|ADO31463.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           alpha710]
          Length = 461

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 76  DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 132 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173


>gi|261392288|emb|CAX49811.1| putative DnaQ-like exonuclease [Neisseria meningitidis 8013]
          Length = 470

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|254672325|emb|CBA05474.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria
           meningitidis alpha275]
          Length = 312

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 76  DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 132 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173


>gi|254670274|emb|CBA05558.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria
           meningitidis alpha153]
          Length = 461

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 76  DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 132 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173


>gi|218768453|ref|YP_002342965.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491]
 gi|121052461|emb|CAM08798.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491]
          Length = 470

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|306833904|ref|ZP_07467028.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis
           ATCC 700338]
 gi|304423905|gb|EFM27047.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis
           ATCC 700338]
          Length = 827

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 90/182 (49%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++ N  +  + D+E TG  +    II++G V +++  +  +T+Q  + P+    S   +
Sbjct: 1   MMQVNSQKYAIVDLEATGAHAM-AEIIQVGIV-IIENDEIVKTYQTDVNPHEA-LSEHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITDE L   P FS +  E ++    ++  ++AHN KFD   +  +L     +   P
Sbjct: 58  NLTGITDEQLAKAPDFSQVAQEIFNLI--EDCVFVAHNVKFDANLLAEQLFMEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +DT+ +A+  +P+  +  L +L     + ++    H A+ D++  + +++K+     
Sbjct: 116 --RVDTVELAQVFYPTFEKYSLGNLADVLALDLAD--AHTAISDAYATAQLFLKLKAKMK 171

Query: 180 QI 181
            +
Sbjct: 172 SL 173


>gi|194246482|ref|YP_002004121.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
 gi|193806839|emb|CAP18268.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
          Length = 1522

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 10/176 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I KN M  +VFDIETTG     D+IIEI   ++ +    ++ F   + P           
Sbjct: 410 ILKN-MEYVVFDIETTGFSKVRDKIIEISGFKIKNNIVIDQ-FYSLVNPEI-DLPENIYL 466

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  I +E LK+ P    +  +F  F   +N   +AHNA FDV FI  + +++N       
Sbjct: 467 LTKIKNETLKNAPKILQVLPDFLKFI--KNTCLVAHNASFDVSFIFEKSKQLNIS-FPLL 523

Query: 122 RIIDTLSIARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +IDTL++++    S      L  L  ++ + +     H A  D+   +++++K++
Sbjct: 524 PVIDTLALSQYYFSSFMKFFSLKRLAAKFKVKLE--EHHRAKDDAKATTEIFMKIL 577


>gi|293365088|ref|ZP_06611805.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus oralis ATCC 35037]
 gi|291316538|gb|EFE56974.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus oralis ATCC 35037]
          Length = 830

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 105/238 (44%), Gaps = 13/238 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+     R +V D+E T   SK  +II++G V + +    ++ +   + P+         
Sbjct: 1   MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIIDQ-YATDVNPH-EPLDSHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+TD+ L   P FS +  + ++    ++  ++AHN +FD   +   L     +   P
Sbjct: 58  ELTGLTDQRLAVAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLLAEFLFFEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +DT+ +A+  +P   + +L  LC+  GI + H   H AL D+   +++ + M     
Sbjct: 116 --RVDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYMRQKLF 171

Query: 180 QINFG-FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236
           ++  G  ++  D       ++   I  + + + L +     EL  H   ++   K  +
Sbjct: 172 ELPKGLLESLLDLADNLLYESYLLIEEVYQQQSLLSSPDLMEL--HGLFLRKESKALV 227


>gi|260578114|ref|ZP_05846035.1| exonuclease [Corynebacterium jeikeium ATCC 43734]
 gi|258603753|gb|EEW17009.1| exonuclease [Corynebacterium jeikeium ATCC 43734]
          Length = 198

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 26/187 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D+ETTGL  + +RIIEI A+ + +    ++ +   L PN      E   L GI+D  
Sbjct: 13  IVIDLETTGLRPQEERIIEIAALHIRNGELQDK-YTTLLNPN-LSVPQEITDLTGISDGL 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE-------------WIAHNAKFDVGFINAELQRINK- 115
           L DKP+FS +  E  +F  +                  + HN  FD  F+  E+ R    
Sbjct: 71  LADKPTFSEVMPELLNFLRDATLTEPSTSLGFESTPRLVGHNVSFDFSFLQHEILRTQLK 130

Query: 116 -----DPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                +     R++ T   +R   P     R  L ++     I   HR  H A+ D+   
Sbjct: 131 NSADANRPYTPRLVCTAEASRTLIPRESVGRYRLGNVASYLKIP--HRPLHRAMSDALAT 188

Query: 168 SDVYIKM 174
            DV   +
Sbjct: 189 YDVLRAL 195


>gi|257867744|ref|ZP_05647397.1| DNA polymerase III [Enterococcus casseliflavus EC30]
 gi|257874072|ref|ZP_05653725.1| DNA polymerase III [Enterococcus casseliflavus EC10]
 gi|257801827|gb|EEV30730.1| DNA polymerase III [Enterococcus casseliflavus EC30]
 gi|257808236|gb|EEV37058.1| DNA polymerase III [Enterococcus casseliflavus EC10]
          Length = 918

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 8/174 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG DS  DRII+ G V + D    NR F   + P+ R+ S +  +L  IT++
Sbjct: 5   YAVVDLETTGTDSTIDRIIQFGCVLVQDGKIINR-FAADINPD-RRISKQIQRLTHITNQ 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F  I    ++  +  N  ++AHN  FD  F++ E  R    PL     IDT+ 
Sbjct: 63  QVSKAPYFEDIADTIYNLLS--NTIFVAHNIYFDYHFLSNEFVRCGLPPLSI-PGIDTVE 119

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +A+   P  S   L  L     I   H + H A  D+ + + +++ +     Q+
Sbjct: 120 LAQVFLPTESSFRLGDLAD--SIGFRHDNPHQADSDAEVTAALFLYIEAIMRQL 171


>gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
           MA-4680]
 gi|29610102|dbj|BAC74150.1| putative DNA polymerase III epsilon subunit [Streptomyces
           avermitilis MA-4680]
          Length = 325

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 11/200 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRII      L    +    +   + P      P  + +HG+T +
Sbjct: 22  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTMVNPER---DPGPVWIHGLTSD 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I +EF     ++    +AHNA FD   I  E  R  K      + + T++
Sbjct: 78  VLEGAPLFEDIAAEFASRLADR--VLVAHNAVFDWSMIAREYARA-KSQAPVRQRLCTIA 134

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +++    P   + L SL   +G+    +  H AL D+ +L++ +   +   ++       
Sbjct: 135 LSKELGLPLPNHKLESLAAHFGVV--QQRAHHALDDARVLAEAFRPSLHAAARDGVRLPL 192

Query: 188 NEDRFFKEEKKTVPNISLLK 207
            E     E   T P I    
Sbjct: 193 LECLPLTEWNAT-PRIGRQP 211


>gi|282861901|ref|ZP_06270964.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
 gi|282562926|gb|EFB68465.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
          Length = 333

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 10/211 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+      L         +   + P      P  + +HG+T E
Sbjct: 19  YAVVDVETTGL-ARDDRIVSAAVYRLDALGDVEDHWYTLVNPER---DPGPVWIHGLTSE 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  + ++  +  + +    +AHNA FD   +  E  R         R+     
Sbjct: 75  ALEGAPLFPEVAAQLSERLDGR--VLVAHNAAFDWSMLAREYARAAITAPVRQRLCTIAL 132

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
               + P   + L SL   +G+    +  H AL D+ +L++ +   +   ++        
Sbjct: 133 SKELRLPLPNHKLESLAAHFGVV--QQRAHHALDDARVLAEAFRPSLHAAARGGVRLPLL 190

Query: 189 EDRFFKE--EKKTVPNISLLKRDKPLFTRIT 217
           E R   E  +    P +           R +
Sbjct: 191 ECRPLTEWTDSPVAPRVGYQPSRGQGTWRAS 221


>gi|120598713|ref|YP_963287.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1]
 gi|120558806|gb|ABM24733.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1]
          Length = 212

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 9/201 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL   +  R IEIGAV + +   T R F   + P G + S       GI+++
Sbjct: 14  VVLDFETSGLSPNQGARAIEIGAVLIENGVITQR-FSELMGP-GFRISSFIEDYTGISNQ 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++      + + F DF  +     +AHNA FD  F++AE   I+ +     +   +L 
Sbjct: 72  MLRNAAPCHEVMARFADFIGDN--HLVAHNAAFDQRFLDAEFAHIHHEY--QGQFACSLL 127

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +ARR +P + N   +   RY    ++ + H AL D+ +   +++ M+    Q +F   + 
Sbjct: 128 LARRLYPLASNHQLATLVRYKQLPNNGTFHRALADAEMTGHLWLAMLADL-QRDFAITSP 186

Query: 189 EDRFFKE-EKKTVPNISLLKR 208
                ++  +KT  +++   R
Sbjct: 187 PFSLMQKITQKTKADVAKFIR 207


>gi|319426278|gb|ADV54352.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200]
          Length = 212

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 9/201 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET+GL   +  R IEIGAV + +   T R F   + P G + S       GI+++
Sbjct: 14  VVLDFETSGLSPNQGARAIEIGAVLIENGVITQR-FSELMDP-GFRISTFIEDYTGISNQ 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++      + + F DF  +     +AHNA FD  F++AE   I+       +   +L 
Sbjct: 72  MLRNAAPCHEVMARFADFIGDN--HLVAHNAAFDQRFLDAEFAHIHHQY--QGQFACSLL 127

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +ARR +P + N   +   RY    ++ + H AL D+ +   +++ M+    Q +F   + 
Sbjct: 128 LARRLYPLASNHQLATLVRYKQLPNNGTFHRALADAEMTGHLWLAMLADL-QRDFAITSP 186

Query: 189 EDRFFKE-EKKTVPNISLLKR 208
                ++  +KT  +++   R
Sbjct: 187 PFSLMQKITQKTKADVAKFIR 207


>gi|68535798|ref|YP_250503.1| putative exonuclease [Corynebacterium jeikeium K411]
 gi|68263397|emb|CAI36885.1| putative exonuclease [Corynebacterium jeikeium K411]
          Length = 198

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 26/187 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D+ETTGL  + +RIIEI A+ + +    ++ +   L PN      E   L GI+D  
Sbjct: 13  IVIDLETTGLRPQEERIIEIAALHIRNGELQDK-YTTLLNPN-LSVPQEITDLTGISDGL 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE-------------WIAHNAKFDVGFINAELQRINK- 115
           L DKP+FS +  E  +F  +                  + HN  FD  F+  E+ R    
Sbjct: 71  LADKPTFSEVMPELLNFLRDATLTEPSTSLGFESTPRLVGHNVSFDFSFLQHEILRTQLK 130

Query: 116 -----DPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                +     R++ T   +R   P     R  L ++     +   HR  H A+ D+   
Sbjct: 131 NSAYANRPYTPRLVCTAEASRTLIPRESVGRYRLGNVASYLKVP--HRPLHRAMSDALAT 188

Query: 168 SDVYIKM 174
            DV   +
Sbjct: 189 YDVLRAL 195


>gi|325208398|gb|ADZ03850.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis NZ-05/33]
          Length = 469

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 27  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 83

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 84  DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 139

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 140 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 181


>gi|330444392|ref|YP_004377378.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58]
 gi|328807502|gb|AEB41675.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58]
          Length = 232

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 16/216 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG     DR+IEI A      S T  +F  ++ P       ++ K+HGIT   
Sbjct: 5   IFYDTETTGTQIDKDRVIEIAAY----NSSTKESFVTYVNPEI-PVPEDSSKIHGITTAM 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +   P+F   +  F  F     +  +AHN   FD+  +  E QR + +PL+  R ID+L 
Sbjct: 60  VSSAPTFPEAYHNFKQFCGSA-SILVAHNNDNFDLPLLQKECQRYSLEPLNL-RTIDSLK 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            A++  P   +++L  L + YG   +    H AL D   L  V+  ++   +        
Sbjct: 118 WAKKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLHKVFSALVGDLTPEQI-LAL 174

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
            E+ F       V  +   K      + I    L+ 
Sbjct: 175 LEESF----HPRVFKMPFGKYKGKTLSEIPASYLEW 206


>gi|239978772|ref|ZP_04701296.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 324

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 84/202 (41%), Gaps = 12/202 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+  G  +L    +    +   + P      P  + +HG+T  
Sbjct: 19  YAVVDVETTGL-ARDDRIVSAGVYQLDALGRVEDHWYTLVNPER---DPGPVWIHGLTTG 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LKD P F  I  E      ++    +AHNA FD   +  E  R  +      R + T++
Sbjct: 75  VLKDAPLFKDISDELSARLADR--VLVAHNAAFDWSMLAREYARAERVAPVRQR-LCTIA 131

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +++    P   + L SL   +G+       H AL D+ +L++ +   +V  +        
Sbjct: 132 LSKELGLPLPNHKLESLAAHFGVV--QERAHHALDDARVLAEAFRPSLVAAAGGGVRLPL 189

Query: 188 NEDRFFKE--EKKTVPNISLLK 207
            E R   E  E    P I    
Sbjct: 190 LECRPLTEWSEPPATPRIGRQP 211


>gi|307330749|ref|ZP_07609886.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306883641|gb|EFN14690.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 328

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 10/188 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+     +L         +   + P      P  + +HG+T+E
Sbjct: 26  YAVVDVETTGL-ARDDRIVSAAVYQLDARGAVQDHWYTLVNPQR---DPGPVWIHGLTEE 81

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  E  +   ++    +AHNA FD   +  E  R +K      + + T++
Sbjct: 82  VLEGAPRFPEIAGELAERLADR--VLVAHNAAFDWSMLAREYAR-SKSAAPVRQRLCTIA 138

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +++    P   + L +L   YG+    R  H AL D+ +L++ +   +   ++       
Sbjct: 139 LSKELGLPLPNHKLETLAAHYGVV--QRRAHHALDDARVLAETFRPSLHRAAETGLRLPL 196

Query: 188 NEDRFFKE 195
              +   E
Sbjct: 197 LACQPLTE 204


>gi|172059933|ref|YP_001807585.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6]
 gi|171992450|gb|ACB63369.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 375

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 89/166 (53%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTG  +   RI EIG VE+        T+   + P G+   P   +L GI+D+ 
Sbjct: 16  VFVDLETTGGSTAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQSIPPFIQQLTGISDDM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D PSF+S+    ++  +     ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRDAPSFASLAPTLFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128

Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P   R+ L++L +R+G+  +  ++H AL D+ LL   + ++
Sbjct: 129 SRALFPREARHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172


>gi|261408383|ref|YP_003244624.1| hypothetical protein GYMC10_4596 [Paenibacillus sp. Y412MC10]
 gi|261284846|gb|ACX66817.1| DNA polymerase III, epsilon subunit [Paenibacillus sp. Y412MC10]
          Length = 246

 Score =  148 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 9/177 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEA 59
              +++  +VFD+ETTG + +  D I+  GA+ ++      N TF + +  +G   SP  
Sbjct: 54  TPLDELEVVVFDLETTGFNHQHGDEILSFGAIRVIGEQVIENETFHMIVN-SGAPVSPFI 112

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L GIT + +   P       +F  F   +    +AH A  D GF+NA L + +K  L 
Sbjct: 113 AELTGITQQMVDAAPPLMEGLHDFMAFIGGR--VLVAHAAAHDRGFLNAALWKTSKVRL- 169

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R++DT+ +A+R +P  +   L+ L +  GI +  R  H AL D+ + + ++   M
Sbjct: 170 THRLLDTMMLAQRLYPEQKDYSLDELLRSSGIPVEGR--HHALSDARMTARLWADYM 224


>gi|326406526|gb|ADZ63597.1| DNA polymerase III subunit epsilon [Lactococcus lactis subsp.
           lactis CV56]
          Length = 277

 Score =  148 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 4/167 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFD ETTG  ++ + II+IGAV+  + ++    F   +       S E  +L GI  
Sbjct: 4   KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYVSTEITQLTGIKP 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L ++P+   I  EF DF   +    +AHNA FD+ F+   +       ++  R+ DTL
Sbjct: 64  ADLLNQPTIEEILPEFLDFI--KGHLLVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++    S   L +      + ++    H AL D  + + +Y  +
Sbjct: 122 AESKKLLTMSSYALENFKDL--LEMNDLRSHDALNDCLITAKLYQYL 166


>gi|322689603|ref|YP_004209337.1| exonuclease [Bifidobacterium longum subsp. infantis 157F]
 gi|320460939|dbj|BAJ71559.1| putative exonuclease [Bifidobacterium longum subsp. infantis 157F]
          Length = 235

 Score =  148 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 11/172 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG    +  I EIGAV + +    ++ FQ  + P  R    +   L GITD 
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            + D      +   F  +     A       + HN  FD+ F++   + I          
Sbjct: 92  MVADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFA-CAD 150

Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            DT+ I+R   P+ R+  L  L  R+GI  +   +H AL D+      +  M
Sbjct: 151 YDTMQISRALFPAQRHHRLADLIVRFGI--ADNEEHRALSDAIQTQQCFEWM 200


>gi|291320001|ref|YP_003515259.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae]
 gi|290752330|emb|CBH40301.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae]
          Length = 1459

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 6/169 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FDIETTGL  K   IIE GAV++    K  +  Q F+ P   K      +L GIT +
Sbjct: 425 YVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGKVTQFFIKPQ-AKIGAFTTELTGITQQ 483

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L  +  S        +D  + + A  IAHNAKFD  F+  +  R+N  P     +IDTL
Sbjct: 484 MLDSEGLSIKDGLQRIYDCLDGKVA--IAHNAKFDFNFLKEQF-RLNNVPFPNVTVIDTL 540

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +R   P+  R+ L  +  R G+       H    D+ +L++V++ ++
Sbjct: 541 IASRIGFPNYKRHKLEDVASRLGVVYDPNVAHRGDYDAKVLANVWVNII 589


>gi|239998744|ref|ZP_04718668.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae 35/02]
 gi|240014337|ref|ZP_04721250.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI18]
 gi|240080968|ref|ZP_04725511.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA19]
 gi|240121900|ref|ZP_04734862.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID24-1]
 gi|240123269|ref|ZP_04736225.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID332]
 gi|268594593|ref|ZP_06128760.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268597081|ref|ZP_06131248.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
 gi|268547982|gb|EEZ43400.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268550869|gb|EEZ45888.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
          Length = 255

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 15/213 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 76  DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           + ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D     +        G 
Sbjct: 132 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCDYLEYSLSA-----HGL 184

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
           +    + F+     +   +L +R +     +  
Sbjct: 185 EEWSRQCFRLTNPKLFPAALPERLRERLYGLPD 217


>gi|269214643|ref|ZP_05986966.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           lactamica ATCC 23970]
 gi|269209302|gb|EEZ75757.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           lactamica ATCC 23970]
          Length = 470

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +       +L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAELTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    IAHN++FD  F+  E  R       P+  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|15643262|ref|NP_228306.1| DNA polymerase III, epsilon subunit, putative [Thermotoga maritima
           MSB8]
 gi|4981007|gb|AAD35581.1|AE001726_15 DNA polymerase III, epsilon subunit, putative [Thermotoga maritima
           MSB8]
          Length = 189

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 9/181 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59
           +  N     V D ETTG D    DRI+EI AV +       N+ F   + P  R      
Sbjct: 4   MIWNDTVFCVVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNPRIR-IPALI 62

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+HGI++  + + P   +++  F D+   +    + HNA FD+ F++   +     P+ 
Sbjct: 63  QKVHGISNMDIVEAPDMDTVYDLFRDYV--KGTVLVFHNANFDLTFLDMMAKETGNFPI- 119

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +  IDTL ++        + L  L +R GI  + R  H AL D+ + + V++K++    
Sbjct: 120 TNPYIDTLDLSEEIF-GRPHSLKWLSERLGIKTTIR--HRALPDALVTARVFVKLVEFLG 176

Query: 180 Q 180
           +
Sbjct: 177 E 177


>gi|325140605|gb|EGC63125.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis CU385]
          Length = 469

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 27  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 83

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 84  DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 139

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 140 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 181


>gi|323694146|ref|ZP_08108325.1| DNA polymerase III subunit epsilon [Clostridium symbiosum
           WAL-14673]
 gi|323501863|gb|EGB17746.1| DNA polymerase III subunit epsilon [Clostridium symbiosum
           WAL-14673]
          Length = 226

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 20/215 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            K     +  D+ETTGLD K+D+IIEIGAV ++D  +   TF  F+ P  R+      +L
Sbjct: 20  EKEADSYVAIDLETTGLDPKHDKIIEIGAVLVIDG-EIKETFSTFVNP-RRELDGRIREL 77

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT E     P    +     +F   ++   + H+  FD  F+      +NK  +    
Sbjct: 78  TGITGEMTAGAPDIGDVIGRVVEFC--RDLPLLGHHIIFDYSFLKRAA--VNKGLVFEKS 133

Query: 123 IIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            IDTL++ RR  P   + +L +  + YGI       H AL D+ L + +  +        
Sbjct: 134 GIDTLTLCRRFMPEEEKKNLENASRYYGIK--QTDAHRALADA-LTAHLLYR-------- 182

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
               K +      E  +  P +  +K+++P   + 
Sbjct: 183 --NVKRSHFSSAPEAFRCKPLVYKVKKEQPASKKA 215


>gi|15677307|ref|NP_274462.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|7226692|gb|AAF41810.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|316984587|gb|EFV63552.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Neisseria meningitidis H44/76]
 gi|325199934|gb|ADY95389.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis H44/76]
          Length = 470

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|121607002|ref|YP_984331.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
 gi|120595971|gb|ABM39410.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
          Length = 203

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 9/164 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            V D ETTG+     DR  E+  V LL+  +    FQ  +   G +      +L GIT+ 
Sbjct: 5   AVIDFETTGISPGCGDRATEVAIV-LLEGGRVVDRFQSLMN-AGVRIPSFITQLTGITNA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  + + ++   F    +A  +AHNA FD  F  AEL R       P   I TL 
Sbjct: 63  MVAGAPDAAQVMTQASRFVG--DAPLVAHNAAFDRKFWQAELDRAGLAA--PQPFICTLL 118

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           ++RR +P    + L SL   +G+  +    H AL D+ +  ++ 
Sbjct: 119 LSRRLYPQAPNHKLGSLVDFHGLPRTG-QAHRALADAEMAVELL 161


>gi|329929369|ref|ZP_08283117.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Paenibacillus sp. HGF5]
 gi|328936456|gb|EGG32901.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Paenibacillus sp. HGF5]
          Length = 246

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 9/177 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEA 59
              +++  +VFD+ETTG + +  D I+  GA+ ++      N TF + +  +G   SP  
Sbjct: 54  TPLDELEVVVFDLETTGFNHQHGDEILSFGAIRVIGEQVIENETFHMIVN-SGAPVSPFI 112

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L GIT + +   P       +F  F   +    +AH A  D GF+NA L + +K  L 
Sbjct: 113 AELTGITQQMVDAAPPLMEGLHDFMAFIGGR--VLVAHAAAHDRGFLNAALWKTSKVRL- 169

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R++DT+ +A+R +P  +   L+ L +  GI +  R  H AL D+ + + ++   M
Sbjct: 170 THRLLDTMMLAQRLYPEQKDYSLDELLRSSGIPVEGR--HHALSDARMTARLWADYM 224


>gi|261496609|ref|ZP_05992989.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307812|gb|EEY09135.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 221

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 20/199 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53
           + KN+ R    +V D+ET GL+++ D ++E+ A+ +      Y   ++     + P  G 
Sbjct: 20  LLKNRFRGYLPVVIDVETAGLNAQTDALLELAAITVKMDENGYLVEDQKCHFHIKPFEGA 79

Query: 54  KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105
             +PE+LK +GI  D  L+   + +    E +            Q A  +AHNA FD  F
Sbjct: 80  NINPESLKFNGIDIDNPLRGAVAENIAIPEMFKMVRRAMKEQGCQRAIIVAHNATFDQSF 139

Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A ++RIN  +DP  P  + DT ++A   +   +  L   C+   I       H AL D
Sbjct: 140 LQAAIKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQAAQINFDGHQAHSALYD 197

Query: 164 SHLLSDVYIKMMVGGSQIN 182
           +   ++++  M+     + 
Sbjct: 198 TEKTTELFCAMVNKLKDLG 216


>gi|23464698|ref|NP_695301.1| exonuclease [Bifidobacterium longum NCC2705]
 gi|189438951|ref|YP_001954032.1| DNA polymerase III subunit alpha [Bifidobacterium longum DJO10A]
 gi|239620784|ref|ZP_04663815.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132392|ref|YP_003999731.1| polc [Bifidobacterium longum subsp. longum BBMN68]
 gi|23325262|gb|AAN23937.1| possible exonuclease [Bifidobacterium longum NCC2705]
 gi|189427386|gb|ACD97534.1| DNA polymerase III alpha subunit [Bifidobacterium longum DJO10A]
 gi|239516360|gb|EEQ56227.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311772644|gb|ADQ02132.1| PolC [Bifidobacterium longum subsp. longum BBMN68]
          Length = 235

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 11/172 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG    +  I EIGAV + +    ++ FQ  + P  R    +   L GITD 
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            + D      +   F  +     A       + HN  FD+ F++   + I          
Sbjct: 92  MVADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFA-CAD 150

Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            DT+ I+R   P+ R+  L  L  R+GI  +   +H AL D+      +  M
Sbjct: 151 YDTMQISRALFPAQRHHRLADLIVRFGI--ADNEEHRALSDAIQTQQCFEWM 200


>gi|126435878|ref|YP_001071569.1| hypothetical protein Mjls_3300 [Mycobacterium sp. JLS]
 gi|126235678|gb|ABN99078.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS]
          Length = 630

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 20/214 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN---DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           +       +V D+ETTG  +     D I EIGAV++             + P GR   P+
Sbjct: 23  LSLRDTTFVVVDLETTGGRATGERPDAITEIGAVKVRGGEVLGE-LATLVDP-GRAIPPQ 80

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + L GIT   +   P   S+   F +F   + +  +AHNA FD+GF+ A  ++      
Sbjct: 81  IVSLTGITTAMVCAAPRIESVLPAFLEF--ARGSVLVAHNAGFDIGFLRAAAEQCGLTWP 138

Query: 119 DPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P  ++ T+ +ARR           L++L + +    +    H AL D+    DV   ++
Sbjct: 139 RP-PVLCTVKLARRVLTRDEAPSVRLSALAQLFRAKTT--PTHRALDDARATVDVLHGLI 195

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
                 N G  T     + + +  +P+++  +R 
Sbjct: 196 E--RIGNQGVHT-----YTDLRAYLPDVTPAQRR 222


>gi|320535302|ref|ZP_08035422.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Treponema phagedenis F0421]
 gi|320147834|gb|EFW39330.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Treponema phagedenis F0421]
          Length = 216

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 10/166 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
              FD ETTGL  + D ++EIG ++  D+      F + + P G+    +   ++ ITD 
Sbjct: 15  FTAFDTETTGLKQEEDSVVEIGGIKF-DHRGVIARFNILINP-GKPMPEDVTAVNNITDA 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L DKP F+++  +F  F  +     +AHNA FD+GFIN EL+R  K PL  +++IDTL 
Sbjct: 73  MLADKPPFNAVIPDFLRFIKK--TVLVAHNAPFDIGFINNELKRCKKPPL-TNKVIDTLV 129

Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +A+   P     +  L +L  ++GI  +    H A  DS +  + +
Sbjct: 130 LAQEVFPGLGKHQYRLQNLALQFGI--TALEAHRAEDDSRVCMEFF 173


>gi|226310490|ref|YP_002770384.1| hypothetical protein BBR47_09030 [Brevibacillus brevis NBRC 100599]
 gi|226093438|dbj|BAH41880.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 235

 Score =  148 bits (374), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 9/185 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           I  + +  +V D+ETTG      D II +GAV +  ++     +F   + P GR   P  
Sbjct: 46  IPLHDLEVVVVDLETTGFYPDHGDAIISMGAVAMRGEHLLLGDSFYTLVNP-GRAIPPHI 104

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             L GITD+ + D P      S F+ +  ++    +AH+++ +  F+ + L + ++ P  
Sbjct: 105 RSLTGITDDMVADAPPLLEALSRFFQYVGDR--PLVAHHSRHEREFLRSGLWKTSRRPF- 161

Query: 120 PSRIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             R++DT+ + R   +P     L++LC  + I IS R  H A  D+     ++ K +V  
Sbjct: 162 THRMLDTMLLIRLLNNPIGNGSLDALCAAHDIPISRR--HHAYCDALAAGTLWAKYLVKA 219

Query: 179 SQINF 183
               F
Sbjct: 220 QSQGF 224


>gi|225018549|ref|ZP_03707741.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum
           DSM 5476]
 gi|224948681|gb|EEG29890.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum
           DSM 5476]
          Length = 319

 Score =  148 bits (374), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 19/220 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG D   D IIE+GA+ + +  +   +F     P  R      ++L GI++E
Sbjct: 22  YVVIDLETTGYDPHRDEIIELGALRIHEG-EVVESFSSLTKPQ-RDLDDYIIQLTGISNE 79

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P  S +F  + DF    ++  + HN  FDV FI     + +   L  + ++D L 
Sbjct: 80  MLASAPELSDVFPRYLDFIG--DSIVVGHNVHFDVNFIYDTCIKESLK-LFTNDLVDLLW 136

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R+  P  + + L  +   + I +     H +L D     + + K  +   +  +G   
Sbjct: 137 LSRKLLPDLTSHKLCRVSSHFNICVEG--MHRSLFDCKTTFECFEKCRILAKE-RYGQVD 193

Query: 188 NEDRFFKEEKKT----------VPNISLLKRDKPLFTRIT 217
           N  + F+  K+T          +P         PLF ++ 
Sbjct: 194 NLSQVFRPIKRTPCPKLKACDILPECDEFDEAHPLFNKVC 233


>gi|325696784|gb|EGD38672.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK160]
          Length = 814

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S   +II+IG V + + S T +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-GAKIIQIGIVLIENGSIT-KTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+  +P+  +  L +LC    I++ +   H AL D+   + +++K+
Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCDLLDISLEN--AHTALADAQATAQLFLKI 165


>gi|237654602|ref|YP_002890916.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237625849|gb|ACR02539.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 502

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              DIETTG  ++ + I EIG V++ +     R +   + P  R       +L GI D+ 
Sbjct: 13  AFVDIETTGGPAQRESITEIGIVQVDEDG--VREWSTLVRPASR-IPETIQRLTGIDDDM 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P F  I  E +D  + +   ++AHNA+FD G + A  +R   D     +++ T+ +
Sbjct: 70  VADAPRFEDIADEVFDRLDGR--LFVAHNARFDHGHLRAAFRRAGLD--MRPQVLCTVKL 125

Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +RR  P   R+ L+ L +R+G+ ++ R  H AL D+ LL   + K+
Sbjct: 126 SRRLFPDHRRHGLDHLIERHGLAVADR--HRALGDARLLWQFWQKI 169


>gi|325204438|gb|ADY99891.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M01-240355]
          Length = 470

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|15672964|ref|NP_267138.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723925|gb|AAK05080.1|AE006332_9 DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 277

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 4/167 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFD ETTG  ++ + II+IGAV+  + ++    F   +       S E  +L GI  
Sbjct: 4   KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYVSTEITQLTGIKP 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L ++P+   I  EF DF   +    +AHNA FD+ F+   +       ++  R+ DTL
Sbjct: 64  ADLLNQPTIEEILPEFLDFI--KGHLLVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++    S   L +      + ++    H AL D  + + +Y  +
Sbjct: 122 AESKKLLTMSSYALENFKDL--LEMNDLRSHDALNDCLITAKLYQYL 166


>gi|172057786|ref|YP_001814246.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Exiguobacterium sibiricum 255-15]
 gi|171990307|gb|ACB61229.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium
           sibiricum 255-15]
          Length = 937

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + + +V D+ETTG   K  D +IEIG   + D   T R    F+ P  +   P   +L G
Sbjct: 2   EKKFVVVDLETTGHSIKSGDEMIEIGVAVIEDGQITER-LSAFVRPQ-KPIPPFISQLTG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITDE +    SF++I        +     ++AHN +FD+ F+N  L+     P     +I
Sbjct: 60  ITDEDVAQAESFATIAPRVLQLLD--GGVFVAHNVQFDLTFLNEALEEEGYLP-YTGPVI 116

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           DT+ +AR   P+   + L+ L +   + ++H   H A  D+   ++
Sbjct: 117 DTVELARILLPTAESHSLSHLTEA--LQLTHHEAHRAGSDAEATAE 160


>gi|254493534|ref|ZP_05106705.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291]
 gi|268681897|ref|ZP_06148759.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332]
 gi|226512574|gb|EEH61919.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291]
 gi|268622181|gb|EEZ54581.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332]
 gi|317164039|gb|ADV07580.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 264

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 15/213 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 85  DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           + ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D     +        G 
Sbjct: 141 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCDYLEYSLSA-----HGL 193

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
           +    + F+     +   +L +R +     +  
Sbjct: 194 EEWSRQCFRLTNPKLFPAALPERLRERLYGLPD 226


>gi|227546804|ref|ZP_03976853.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|317481634|ref|ZP_07940669.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|322691564|ref|YP_004221134.1| exonuclease [Bifidobacterium longum subsp. longum JCM 1217]
 gi|227212766|gb|EEI80647.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|316916924|gb|EFV38311.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456420|dbj|BAJ67042.1| putative exonuclease [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 235

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 11/172 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG    +  I EIGAV + +    ++ FQ  + P  R    +   L GITD 
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            + D      +   F  +     A       + HN  FD+ F++   + I          
Sbjct: 92  MVADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFA-CAD 150

Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            DT+ I+R   P+ R+  L  L  R+GI  +   +H AL D+      +  M
Sbjct: 151 YDTMQISRALFPAQRHHRLADLIVRFGI--ADNEEHRALSDAIQTQQCFEWM 200


>gi|116492693|ref|YP_804428.1| Rad3-related DNA helicase [Pediococcus pentosaceus ATCC 25745]
 gi|116102843|gb|ABJ67986.1| Rad3-related DNA helicase [Pediococcus pentosaceus ATCC 25745]
          Length = 929

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 9/182 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            NK +  V D+E TG D   D RII+IG    ++  K   TFQ  + P  R       KL
Sbjct: 1   MNKTKYAVVDLEMTGSDFDGDNRIIQIGC-AFVENGKIVDTFQSKVNPQ-RPIPAGITKL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GITDE +++ P F+ I  E +      +  ++AHN +FD  F+N EL R     L+   
Sbjct: 59  TGITDEQVQNAPKFNDIVDEVYR--KLVDTVFVAHNVEFDFPFLNQELVRSGYPELNI-P 115

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +DT+S+++     ++   L  L     I   H   H A  D+   +++ I +     Q+
Sbjct: 116 AVDTVSLSQIVFSFTKGYRLRDLTSYLKIE--HDDPHSADSDAIATANLLIAIKKNLQQL 173

Query: 182 NF 183
             
Sbjct: 174 PI 175


>gi|324990933|gb|EGC22868.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK353]
          Length = 814

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S   +II+IG V L++     +T++  + P+         +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-GAKIIQIGIV-LIENGIITKTYETDVNPH-EDLDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+  +P+  +  L +LC    I++ +   H AL D+   + +++K+
Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165


>gi|331091091|ref|ZP_08339933.1| hypothetical protein HMPREF9477_00576 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405313|gb|EGG84849.1| hypothetical protein HMPREF9477_00576 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 236

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 76/171 (44%), Gaps = 11/171 (6%)

Query: 7   MR--KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           MR   I FD+ETTGL  + D IIEIGAV+ ++  K    F  FL P     S     L G
Sbjct: 1   MRKTYISFDLETTGLSEEKDYIIEIGAVK-VNNGKVVDRFARFLKPPI-SISNTITNLTG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD+ +K+         +F  F +      + HN  FD  F+     R           I
Sbjct: 59  ITDDMVKNAGDTQETIKDFIKFCD--GYFLLGHNIMFDYKFMKTYAARFGLHFEKEG--I 114

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           DTL IAR+ H +     L SLC  Y I  +  S H A  D+   + +Y  +
Sbjct: 115 DTLKIARKVHKNLESKSLESLCTYYNIVNA--SAHRAYHDALATAKLYHML 163


>gi|163791070|ref|ZP_02185490.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Carnobacterium sp. AT7]
 gi|159873626|gb|EDP67710.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Carnobacterium sp. AT7]
          Length = 939

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 9/181 (4%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +K    V DIETTG + +  DR+I+ G V LL+  +    F   + P       +   L 
Sbjct: 3   HKDTYAVVDIETTGGNVASGDRMIQFGCV-LLEGDQVVHRFATNINP-LTSIPKQIEHLT 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G++++ +   P F  I +  ++  +      IAHN +FD  F++AELQR     L  ++ 
Sbjct: 61  GLSNKTVAQAPYFEDIAATIYNLLD--GCIIIAHNIQFDYTFLSAELQRCGMPAL-QNKG 117

Query: 124 IDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT+ +A+   P  S   LN L  ++ I   H + H A  D+ + +++++ +     ++ 
Sbjct: 118 IDTVELAQVLLPTESSYRLNDLVSKFNIE--HTNPHQADSDAAVTAELFLVLKQKLKELP 175

Query: 183 F 183
            
Sbjct: 176 L 176


>gi|319638605|ref|ZP_07993367.1| DNA polymerase III subunit [Neisseria mucosa C102]
 gi|317400354|gb|EFV81013.1| DNA polymerase III subunit [Neisseria mucosa C102]
          Length = 463

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG +   DRI E+  V       T   ++  + P  R       +L GI DE 
Sbjct: 22  VVVDLETTGGNFYQDRITEVALVRFEQGRAT--HYEQLVNP-CRSIPEFVARLTGIHDET 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+ P F+ I ++       Q A  +AHN++FD  F+  E  RI+ D   PS  + T+ +
Sbjct: 79  VKNAPVFADIAADLLPLL--QGAVVVAHNSRFDYTFLRHEFARIHTDFAAPS--LCTVQL 134

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +RR +P   ++ L+S+ +R GI  ++R  H A+ D   L D Y+++
Sbjct: 135 SRRLYPEFYKHSLDSIIERTGIQTANR--HRAMTDVVALCD-YLEL 177


>gi|257876649|ref|ZP_05656302.1| DNA polymerase III [Enterococcus casseliflavus EC20]
 gi|257810815|gb|EEV39635.1| DNA polymerase III [Enterococcus casseliflavus EC20]
          Length = 918

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 8/174 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG DS  DRII+ G V + D    NR F   + P+ R+ S +  +L  IT++
Sbjct: 5   YAVVDLETTGTDSTIDRIIQFGCVLVQDGKIINR-FAADINPD-RRISKQIQRLTHITNQ 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F  I    ++  +  N  ++AHN  FD  F++ E  R    PL     IDT+ 
Sbjct: 63  QVSKAPYFEDIADTIYNLLS--NTIFVAHNIYFDYHFLSNEFVRCGLPPLSI-PGIDTVE 119

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +++   P  S   L  L     I   H + H A  D+ + + +++ +     Q+
Sbjct: 120 LSQVFLPTESSFRLGDLAD--SIGFRHDNPHQADSDAEVTAALFLYIEAIMRQL 171


>gi|240016771|ref|ZP_04723311.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA6140]
 gi|240112673|ref|ZP_04727163.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae MS11]
          Length = 255

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 15/213 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 76  DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           + ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D     +        G 
Sbjct: 132 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCDYLEYSLSA-----HGL 184

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
           +    + F+     +   +L +R +     +  
Sbjct: 185 EEWSRQCFRLTNPKLLPAALPERLRERLYGLPD 217


>gi|89894618|ref|YP_518105.1| hypothetical protein DSY1872 [Desulfitobacterium hafniense Y51]
 gi|89334066|dbj|BAE83661.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 929

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 85/181 (46%), Gaps = 11/181 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + +V DIETTG D  ND IIE  A+  ++  +    F V + P  R+     L+L GI
Sbjct: 3   KGKIVVIDIETTGFDIYNDEIIEFAAL-CIEEGEEAEAFSVLISP-RRQVPERILRLTGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + E LK   S  +   +  D F  Q+A  + HN +FD+GF+   L    ++ L      D
Sbjct: 61  SPEELKQAGSLHAYRDKILDLF--QDAIIVGHNVEFDLGFLEQALTIHFENTL-----WD 113

Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           TL IAR  +P   +  L  L K  G+T      H AL D+    ++       G  ++ G
Sbjct: 114 TLEIARILYPNMPKYKLGDLTKSLGLT-PLEKAHRALFDARAAWELLQACWEKGLTLDLG 172

Query: 185 F 185
           F
Sbjct: 173 F 173


>gi|194468010|ref|ZP_03073996.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri
           100-23]
 gi|194452863|gb|EDX41761.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri
           100-23]
          Length = 954

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 103/234 (44%), Gaps = 23/234 (9%)

Query: 1   MIRKNKMR----------KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           M +++  R            V D+ETTG +    DRII+IG V + D    N  F+  + 
Sbjct: 1   MTQRSSQRTKKRDKKAPIYSVVDLETTGTNVNHGDRIIQIGCVLVQDGEIIN-HFETKIN 59

Query: 50  PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           P   K     ++L GI D+ ++  P F  I    +    E    ++AHN  FD  F+NAE
Sbjct: 60  P-REKIPRSIVQLTGIEDKDVRKAPLFEDIAGTIYSLLAE--TTFVAHNVNFDFPFLNAE 116

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168
           L+R     L     IDT+++++   P++++  L  L     I   H   H A+ D+   +
Sbjct: 117 LERAGYPSLSI-PAIDTVTLSQILLPTAKSFRLRDLTSSLHIE--HDHPHSAVSDAEATA 173

Query: 169 DVYIKMMVGGSQIN---FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           ++   ++    Q+        T       ++   V ++ LL+R K     +++E
Sbjct: 174 ELLTDLLKRIEQLPTLTLEKITQLKLNLPQQTAGVFDVELLRRRKS-PQPLSEE 226


>gi|313668201|ref|YP_004048485.1| DNA polymerase III subunit [Neisseria lactamica ST-640]
 gi|313005663|emb|CBN87106.1| putative DNA polymerase III subunit [Neisseria lactamica 020-06]
          Length = 470

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   D + E+  V+          ++  + P  +       +L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDMVTEVALVKFEQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|281491483|ref|YP_003353463.1| DNA polymerase III subunit epsilon [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375201|gb|ADA64714.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis
           KF147]
          Length = 277

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 4/167 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFD ETTG  ++ + II+IGAV+  + ++    F   +       S E  +L GI  
Sbjct: 4   KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYVSTEITQLTGIKP 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L ++P+   I  EF DF   +    +AHNA FD+ F+   +       ++  R+ DTL
Sbjct: 64  ADLLNQPTIEEILPEFLDFI--KGHLLVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++    S   L +      + ++    H AL D  + + +Y  +
Sbjct: 122 AESKKLLTMSSYALENFKDL--LEMNDLRSHDALNDCLITAKLYQYL 166


>gi|268686367|ref|ZP_06153229.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035]
 gi|268626651|gb|EEZ59051.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035]
          Length = 264

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 85  DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 141 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182


>gi|240127974|ref|ZP_04740635.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 255

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 76  DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 132 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173


>gi|240117716|ref|ZP_04731778.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID1]
          Length = 255

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 76  DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 132 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173


>gi|325134568|gb|EGC57212.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M13399]
 gi|325144729|gb|EGC67024.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M01-240013]
 gi|325205795|gb|ADZ01248.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M04-240196]
          Length = 470

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|290580273|ref|YP_003484665.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025]
 gi|254997172|dbj|BAH87773.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025]
          Length = 842

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 89/175 (50%), Gaps = 10/175 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K   +  V D+E TG    +  II++G V +++  +  +T+   + P+ +  S   +
Sbjct: 23  MTEKKTRKYAVVDLEATGAS-HSASIIQVGIV-IIENEQIIQTYTTDVNPH-KPLSKAII 79

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GITD  L+  P FS + ++ +   +  +  ++AHN KFD   +   L     + L P
Sbjct: 80  RLTGITDAQLQQAPDFSEVAADIYHLID--DCVFVAHNVKFDANLLAEHLFLEGFELLTP 137

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +L +   I +S    H A+ D+   +++++K+
Sbjct: 138 --RVDTVELAQVFYPTFEKYSLGNLTELLKIDLSD--AHTAIADAKATAELFLKL 188


>gi|332362812|gb|EGJ40606.1| DNA polymerase III [Streptococcus sanguinis SK355]
          Length = 814

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+  +P+  +  L +LC    I++ +   H AL D+   + +++K+
Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165


>gi|313678200|ref|YP_004055940.1| DNA polymerase III subunit alpha [Mycoplasma bovis PG45]
 gi|312950476|gb|ADR25071.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           bovis PG45]
          Length = 1458

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 6/169 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FDIETTGL  K   IIE GAV++    K  +T Q F+ P   K      +L GIT +
Sbjct: 424 YVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGKTTQFFIKPKD-KIGSFTTELTGITQQ 482

Query: 69  FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L  K         + +D  + + A  IAHNAKFD  F+  +  R+N        +IDTL
Sbjct: 483 MLDSKGLYIKEGLEKIYDCLDGKIA--IAHNAKFDFNFLKEQF-RLNNMQFPRVTVIDTL 539

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +R   P   R+ L  +  R G+       H    D+ +L++V++ ++
Sbjct: 540 VASRIGFPGYKRHKLEDVASRLGVVYDPNVAHRGDYDAKVLANVWVNII 588


>gi|326407322|gb|ADZ64393.1| ATP-dependent DNA helicase DinG [Lactococcus lactis subsp. lactis
           CV56]
          Length = 794

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            KN  R  V D+E T   S  ++II+IG V L++  +   TF   + P+     P   +L
Sbjct: 1   MKNMTRYAVVDLEATDAHSSENKIIQIGIV-LVEDGEIVETFSTEVNPH-EPLLPRISEL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G++D+ LK  P FS + ++  +     ++ ++AHNA+FD G +         +  +   
Sbjct: 59  TGLSDKQLKTAPEFSEVAAKVRELL--TDSVFVAHNARFDYGLLEKSFLNAGLE-FNEML 115

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +DT+ +AR  +P+  +  L SL ++  + ++H   H A+ D++  +++ +K+     ++
Sbjct: 116 RVDTVDLARVFYPTFEKYGLESLSEK--LDLAHDHPHAAVSDAYATAELLLKIEAKIQKL 173


>gi|305433007|ref|ZP_07402163.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20]
 gi|304443708|gb|EFM36365.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20]
          Length = 253

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 13/184 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIE+TG   KN +I+EIGAV++ +  + +R F   +    ++      +L GI  +
Sbjct: 72  FCIVDIESTGG-IKNGQILEIGAVKIKNLQEIDR-FSSLV--QVKEIPENITELTGINLD 127

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD PS + + ++F  F   +++ ++AHN +FD GFI+  L       L  +R I T+ 
Sbjct: 128 MVKDAPSLTKVLNDFRLFL--KDSIFVAHNVRFDYGFISKALNECGFGILL-NRRICTIE 184

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
            A+    S R  L+ L +  GI  +H   H AL D+   ++++   +    ++ +  KT 
Sbjct: 185 FAQCCIESPRYKLDVLKELLGIKNAH---HRALNDALAAAEIFKHCLG---KLPYHIKTT 238

Query: 189 EDRF 192
           E+  
Sbjct: 239 EELI 242


>gi|242309952|ref|ZP_04809107.1| DNA polymerase III subunit epsilon [Helicobacter pullorum MIT
           98-5489]
 gi|239523249|gb|EEQ63115.1| DNA polymerase III subunit epsilon [Helicobacter pullorum MIT
           98-5489]
          Length = 247

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 11/187 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + +  + DIET G +    + IEIGA+   +     + FQ F+     +      K+  I
Sbjct: 68  EQKFCIVDIETNGHNPFLHQPIEIGAILYQNGM-VQKEFQSFV--FCEEIPEYITKITNI 124

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E L++ P    +   F  F    +  ++AHN  FD GF++  L       L  +  + 
Sbjct: 125 TTEMLRNAPPIHQVLESFRIFLG--DCVFVAHNVGFDYGFLSNSLHHYGFGYL-YNPSLC 181

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +A++   + R  L  L     I   H   H AL D+ +  +V+     G   +N   
Sbjct: 182 TIKLAQKTFQAPRYSLEFLNGFLNIN--HSPLHRALEDAKVALEVFK---TGLKNLNKNI 236

Query: 186 KTNEDRF 192
            T+ED  
Sbjct: 237 YTSEDLI 243


>gi|74316845|ref|YP_314585.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC
           25259]
 gi|74056340|gb|AAZ96780.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
           ATCC 25259]
          Length = 470

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 9/170 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
             R    D+ETTG ++  DR+ EI    ++       T+   + P  R       +L GI
Sbjct: 7   PQRLAFVDLETTGANAARDRVTEI--GVVVVDGDRVETWSTLVNPE-RAIPQFIQQLTGI 63

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++E + D P+F+ +  E  +  + +   +IAHNA+FD GF+  E QR+ +     + ++ 
Sbjct: 64  SNEMVADAPTFARVADELAERLDGR--LFIAHNARFDYGFLKHEYQRLGRRF--RADVLC 119

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           T+ ++RR  P   R++L+SL  R+G+      +H AL D+ L+   +  +
Sbjct: 120 TVRLSRRLFPEHYRHNLDSLIARHGLATEG-DRHRALADADLIWQFWRTL 168


>gi|331266715|ref|YP_004326345.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5]
 gi|326683387|emb|CBZ01005.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5]
          Length = 830

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 87/186 (46%), Gaps = 10/186 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+     R +V D+E T   SK  +II++G V + +    ++ +   + P+         
Sbjct: 1   MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGDIIDQ-YATDVNPH-EPLDSHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+TD+ L   P FS +  + ++    ++  ++AHN +FD   +   L     +   P
Sbjct: 58  ELTGLTDQRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLLAEFLFFEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +DT+ +A+  +P   + +L  LC+  GI + H   H AL D+   +++ + M     
Sbjct: 116 --RVDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYMRQKLF 171

Query: 180 QINFGF 185
           ++  G 
Sbjct: 172 ELPKGL 177


>gi|116334989|ref|YP_802484.1| DNA polymerase III epsilon subunit [Candidatus Carsonella ruddii
           PV]
 gi|116235270|dbj|BAF35118.1| DNA polymerase III epsilon subunit [Candidatus Carsonella ruddii
           PV]
          Length = 181

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 69/170 (40%), Positives = 99/170 (58%), Gaps = 7/170 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I  D+ETTGL  +  DRIIEIG VE+++   T R F  +  P   K +  A  +HGI 
Sbjct: 3   RIIFLDVETTGLFVEHGDRIIEIGCVEVINGHLTGRVFHSYFNPE-VKITQGAFNVHGIK 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSRI 123
           D+FL  KP F    +EF  F N  N+  IAHNAKFD+ FIN E+   N       + + I
Sbjct: 62  DDFLLLKPMFYEKINEFIGFIN--NSTIIAHNAKFDINFINKEIYLTNFKIKKIQNYANI 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +D+L + R+ +P  +N+LN LC ++ +  + +  HGAL D+ LL+ + IK
Sbjct: 120 LDSLLLFRKLYPRKKNNLNDLCLKFNLIKNKKRIHGALNDAFLLAVLIIK 169


>gi|328945970|gb|EGG40117.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis
           SK1087]
          Length = 814

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+  +P+  +  L +LC    I++ +   H AL D+   + +++K+
Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165


>gi|306825581|ref|ZP_07458920.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431942|gb|EFM34919.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 830

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 104/238 (43%), Gaps = 13/238 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+     R +V D+E T   SK  +II++G V + +    N+ +   + P+         
Sbjct: 1   MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIINQ-YATDVNPH-EPLDSHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+TD  L   P FS +  + ++    ++  ++AHN +FD   +   L     +   P
Sbjct: 58  ELTGLTDRRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLLAEFLFFEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +DT+ +A+  +P   + +L  LC+  GI + H   H AL D+   +++ + M     
Sbjct: 116 --RVDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYMRQKLF 171

Query: 180 QINFG-FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236
           ++  G  ++  +       ++   I  + + + L +     EL  H   ++   K  +
Sbjct: 172 ELPKGLLESLLNLADNLLYESYLVIEEVYQQQSLLSSPDLMEL--HGLFLRKESKALV 227


>gi|194098334|ref|YP_002001392.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           NCCP11945]
 gi|268598740|ref|ZP_06132907.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11]
 gi|193933624|gb|ACF29448.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           NCCP11945]
 gi|268582871|gb|EEZ47547.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11]
          Length = 264

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 15/213 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 85  DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           + ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D     +        G 
Sbjct: 141 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCDYLEYSLSA-----HGL 193

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
           +    + F+     +   +L +R +     +  
Sbjct: 194 EEWSRQCFRLTNPKLLPAALPERLRERLYGLPD 226


>gi|269213464|ref|ZP_05982022.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           cinerea ATCC 14685]
 gi|269146173|gb|EEZ72591.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           cinerea ATCC 14685]
          Length = 470

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +        L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVSGLTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    IAHN++FD  F+  E  R       P+  + +
Sbjct: 85  DGMVADAPVFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182


>gi|224417820|ref|ZP_03655826.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|253827160|ref|ZP_04870045.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|313141361|ref|ZP_07803554.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|253510566|gb|EES89225.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|313130392|gb|EFR48009.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
          Length = 247

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 8/170 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  + DIET G +    + IEIGA+      K   +F  F+     +      KL GIT 
Sbjct: 70  RFCIVDIETNGHNPFVHQPIEIGAIVYQ-GGKICESFHSFV--FCEEIPEYITKLTGITS 126

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L+  P    +   F  F +  +  ++AHN  FD  F++  L       L   R + T+
Sbjct: 127 PMLEKAPKIHQVLESFKLFLS--DCVFVAHNVNFDYQFLSNALYHYGFGYLYNPR-LCTI 183

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +A++   S R  L  L +  GI   H   H AL DS + S+V+ K ++G
Sbjct: 184 KLAQKTFTSPRYSLEFLNEFLGIR--HSPLHRALEDSKVASEVFKKSLMG 231


>gi|323489901|ref|ZP_08095123.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2]
 gi|323396408|gb|EGA89232.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2]
          Length = 202

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGL   ND+II+IGAV+ +++ +   T  + + P  R  S    ++ GIT++
Sbjct: 42  YVVLDFETTGLRPGNDKIIQIGAVKYVNHER-EETMYLMVNPQ-RSISNTITRITGITNK 99

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P    I  +   F    +   IAHNA FD+GF+ A     +  P+    +IDT+ 
Sbjct: 100 DVENAPVIEDIAHDLITFIG--DLPIIAHNAPFDMGFLYALE---DITPIPEYTVIDTVK 154

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +AR+    +  + L +L     +       H AL D    + +Y 
Sbjct: 155 LARKAITQTPNHKLTTLTAFLKLE---HDAHDALGDCLATAAIYQ 196


>gi|83311148|ref|YP_421412.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
 gi|82945989|dbj|BAE50853.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
          Length = 216

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 30/218 (13%)

Query: 1   MIRKNKM----RKIVFDIETTGLD-SKNDRI-------------IEIGAVE---LLDYSK 39
           M+  + +    R I  D ETTG        I             IEIG VE     D  K
Sbjct: 2   MLTLDDLSEVGRLIAIDAETTGFRVPTAAEIKKMPKGLRLPGVMIEIGCVELLRGEDGWK 61

Query: 40  TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
           T  ++   + P G   +  ++ +HGIT   LKD P F  +  EF  F  +     +AH+A
Sbjct: 62  TGESWHRRIQPGG-PIAKASIAVHGITPAELKDAPQFRDVLDEFETFIGQDM--LLAHSA 118

Query: 100 KFDVGFINAELQRINKDPLD-----PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154
           + ++ F+N E  R+ +   D      +  + T  ++R+  P     L+ LC R  I  S 
Sbjct: 119 ENEIEFLNFEYARVGRCGFDDVIFSDNDFVCTQELSRQFFPGVPGSLDVLCDRLWIDRSD 178

Query: 155 R-SKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191
           R   HGALLD+ L ++ ++KM  G  Q +  + +  D+
Sbjct: 179 RFEHHGALLDAILTAEAFMKMAGGFVQDDTRYMSFGDQ 216


>gi|219669053|ref|YP_002459488.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium
           hafniense DCB-2]
 gi|219539313|gb|ACL21052.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium
           hafniense DCB-2]
          Length = 929

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/186 (32%), Positives = 87/186 (46%), Gaps = 14/186 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI   K + +V DIETTG D  ND IIE  A+  ++  +    F V + P  R+     L
Sbjct: 1   MI---KGKIVVIDIETTGFDIYNDEIIEFAAL-CIEEGEEAEAFSVLISP-RRQVPERIL 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GI+ E LK   S  +   +  D F  Q+A  + HN +FD+GF+   L    ++ L  
Sbjct: 56  RLTGISPEELKQAGSLQAYRDKILDLF--QDAIIVGHNVEFDLGFLEQALTIHFENTL-- 111

Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               DTL IAR  +P   +  L  L K  G+T      H AL D+    ++       G 
Sbjct: 112 ---WDTLEIARILYPNMPKYKLGDLTKSLGLT-PLEKAHRALFDARAAWELLQACWEKGL 167

Query: 180 QINFGF 185
            ++ GF
Sbjct: 168 TLDLGF 173


>gi|229822935|ref|ZP_04449005.1| hypothetical protein GCWU000282_00227 [Catonella morbi ATCC 51271]
 gi|229787748|gb|EEP23862.1| hypothetical protein GCWU000282_00227 [Catonella morbi ATCC 51271]
          Length = 828

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 95/196 (48%), Gaps = 12/196 (6%)

Query: 2   IRKNKMRKIVFDIETTG--LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           ++   +R  V D+ETTG  LD + D+II+IGAV + D     +   + L P  R      
Sbjct: 1   MKAKGIRIAVVDLETTGSHLD-QGDQIIQIGAVLIEDGQVLAQH-SMLLNPE-RNIPTHI 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             + GI  + ++D P+FS +   +++    ++  ++AHN  FD+ F+ A+      D   
Sbjct: 58  TAITGIQSDQVQDAPTFSQVAGLWYERL--KDCFFVAHNLGFDLTFLQAKFAEQGLDFQP 115

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           P+  +DT+ +A+   P +   +L  L + +G+       H AL D+ + + +   +    
Sbjct: 116 PA--LDTVQLAKIFLPQAPGFNLQDLSQFFGLNFQD--AHDALGDARMTAHLLDVLAHQA 171

Query: 179 SQINFGFKTNEDRFFK 194
           + +++G K      FK
Sbjct: 172 ADLDYGTKLALQPIFK 187


>gi|254360642|ref|ZP_04976791.1| exoribonuclease T [Mannheimia haemolytica PHL213]
 gi|153091182|gb|EDN73187.1| exoribonuclease T [Mannheimia haemolytica PHL213]
          Length = 215

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 21/207 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGR 53
           + K++ R    +V D+ET GL+++ D ++E+ A+ L    +     ++     + P  G 
Sbjct: 12  LLKHRFRGYLPVVIDVETAGLNAQTDALLELAAITLKMDEQGYLVPDQQCHFHIAPFEGA 71

Query: 54  KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105
             +PE+LK +GI  D  L+   + +    E +            Q A  +AHNA FD GF
Sbjct: 72  NINPESLKFNGIDIDNPLRGAVAENIAIPEMFKMVRKAMKEQGCQRAVIVAHNAAFDQGF 131

Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A ++RIN  +DP  P  + DT ++A   +   +  L   C+   I    +  H AL D
Sbjct: 132 LQAAIKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQVAKIPFDGKQAHSALYD 189

Query: 164 SHLLSDVYIKMMVGGSQINFGFKTNED 190
           +   ++++  M+     +  GF    D
Sbjct: 190 TERTAELFCAMVNRLKDLG-GFPPLSD 215


>gi|309379715|emb|CBX21704.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 326

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          +   + P  +       +L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPK-KPIPQFVAELTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I  E +     +    IAHN++FD  F+  E  R       P+  + +
Sbjct: 76  DGMVVDAPVFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 132 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173


>gi|240115419|ref|ZP_04729481.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID18]
          Length = 255

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPQFVAELTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 76  DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 132 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173


>gi|195952795|ref|YP_002121085.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1]
 gi|195932407|gb|ACG57107.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1]
          Length = 196

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTGL+     IIEI A  L++  +  + F   + P G        ++ GIT+ 
Sbjct: 12  YVVLDIETTGLNPDEHEIIEIFA-FLVEKERITKQFHRLINP-GFFIPRRITEITGITNA 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  +P    I  +F +F   ++   + HN KFD+ F++          L+ S  I TL 
Sbjct: 70  MLVGQPKVEGIIYDFDNFV--KDYIIVGHNVKFDLSFLSKAYSIYLHKKLN-SPNICTLE 126

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++++  P+ +   L+++   + I       H A  D+ L  +++ K+M
Sbjct: 127 LSKKLIPNLKSYKLSAVADYFNIKYE--RLHRAKDDALLTYNIFNKLM 172


>gi|169334141|ref|ZP_02861334.1| hypothetical protein ANASTE_00535 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258858|gb|EDS72824.1| hypothetical protein ANASTE_00535 [Anaerofustis stercorihominis DSM
           17244]
          Length = 204

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 7/166 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTGL+   + IIE+GAV++ D    +  F  F+ P     SPE  KL GI + 
Sbjct: 24  YTVIDIETTGLNPDENEIIEVGAVKVRDRKIVDE-FSSFVSPKKDIISPEIRKLTGIDEA 82

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++       +   F +F + +    + HN  FD+ F+    +R + D    +  +D L 
Sbjct: 83  MIEGADQIEDVIPRFNEFIDGE--ILLGHNVNFDINFLYDNYERYS-DFYLSNDYVDLLK 139

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           I+R+  P    + L ++ K+ GI +    +H A+ D       + K
Sbjct: 140 ISRKLSPEFENHKLETVLKKLGIKVD--QQHRAVSDCIDAHHCFEK 183


>gi|329942403|ref|ZP_08291213.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Chlamydophila psittaci Cal10]
 gi|332287044|ref|YP_004421945.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
 gi|313847640|emb|CBY16628.1| putative DNA polymerase III epsilon chain [Chlamydophila psittaci
           RD1]
 gi|325507354|gb|ADZ18992.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
 gi|328815313|gb|EGF85301.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Chlamydophila psittaci Cal10]
 gi|328914277|gb|AEB55110.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC]
          Length = 249

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 5/166 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M        +  D E TGLD K DRIIE  A+    + +   + +  + P+ R  S E+ 
Sbjct: 1   MTLLKDTVFVCLDCEMTGLDVKKDRIIEFAAIRFT-FDRVIDSMETLINPD-RVISAESQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++H I+D  LKD+P  + +F +   F  E +   + H+  FD+  ++ E +RI +  L  
Sbjct: 59  RIHHISDAMLKDQPRIAEVFPKIKSFLKEGD-YIVGHSVGFDLQVLSQEAERIGESFLSK 117

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +IDTL +A+    S  N L +L   + +       H A+ D  +
Sbjct: 118 YYVIDTLRLAKEYGDSPNNSLEALAVHFNVPYDGN--HRAMKDVEI 161


>gi|15673814|ref|NP_267989.1| DinG [Lactococcus lactis subsp. lactis Il1403]
 gi|12724861|gb|AAK05930.1|AE006413_6 ATP-dependent helicase DinG [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 794

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            KN  R  V D+E T   S  ++II+IG V L++  +   TF   + P+     P   +L
Sbjct: 1   MKNMTRYAVVDLEATDAHSSENKIIQIGIV-LVEDGEIVETFSTEVNPH-EPLLPRISEL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G++D+ LK  P FS + ++  +     ++ ++AHNA+FD G +         +  +   
Sbjct: 59  TGLSDKQLKTAPEFSEVAAKVRELL--TDSVFVAHNARFDYGLLEKSFLNAGLE-FNEML 115

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +DT+ +AR  +P+  +  L SL ++  + ++H   H A+ D++  +++ +K+     ++
Sbjct: 116 RVDTVDLARVFYPTFEKYGLESLSEK--LDLAHDHPHAAVSDAYATAELLLKIEAKIQKL 173


>gi|268603417|ref|ZP_06137584.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1]
 gi|268587548|gb|EEZ52224.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1]
          Length = 264

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 85  DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 141 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182


>gi|57168588|ref|ZP_00367721.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli
           RM2228]
 gi|57020093|gb|EAL56770.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli
           RM2228]
          Length = 251

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 13/184 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIE+TG   KN +I+EIGAV++ +  + +R F   +    ++      +L GI  +
Sbjct: 70  FCIVDIESTGG-IKNGQILEIGAVKIKNLQEIDR-FSSLV--QVKEIPENITELTGINLD 125

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD PS + + ++F  F   +++ ++AHN +FD GFI+  L       L  +R I T+ 
Sbjct: 126 MVKDAPSLTKVLNDFRLFL--KDSIFVAHNVRFDYGFISKALNECGFGILL-NRRICTIE 182

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
            A+    S R  L+ L +  GI  +H   H AL D+   ++++   +    ++ +  KT 
Sbjct: 183 FAQCCIESPRYKLDVLKELLGIKNAH---HRALNDALAAAEIFKHCLG---KLPYHIKTT 236

Query: 189 EDRF 192
           E+  
Sbjct: 237 EELI 240


>gi|330984026|gb|EGH82129.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 234

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 15/229 (6%)

Query: 12  FDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTGLD K  D+++E   VEL+D  KT R   ++  P  R    EA ++H ++ + L
Sbjct: 2   FDTETTGLDPKTGDKMVEAAFVELIDRKKTGRFLHLYFDPK-RDVPDEAREVHNLSRDEL 60

Query: 71  ---KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRIID 125
                   F     +  DF   + A  +AHN+KFD GF + E Q      L      IID
Sbjct: 61  VRLSGGRVFGHFAQQIIDFI--KGATLVAHNSKFDEGFFDMEFQHAGYGKLSDYCESIID 118

Query: 126 TLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           +L++A  K P  +N L++L + Y G     R  HGALLD+ LL+ VY+ M V    ++  
Sbjct: 119 SLAVASMKRPGRQNSLDALLREYVGTENYSREYHGALLDADLLAQVYLLMTVSQEGLSL- 177

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
               + R         P    +         + +  ++ H    + + K
Sbjct: 178 ----DTRLKATGPSLRPARLEVPEGALSVVSVNEAAMERHRSLSERIKK 222


>gi|239623211|ref|ZP_04666242.1| DNA polymerase III subunit epsilon [Clostridiales bacterium
           1_7_47_FAA]
 gi|239522177|gb|EEQ62043.1| DNA polymerase III subunit epsilon [Clostridiales bacterium
           1_7_47FAA]
          Length = 240

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 13/227 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D+ETTGL+ K ++I EI A++++D    ++ +  F+ P GR       +L GITD 
Sbjct: 5   YIALDLETTGLEPKQEKITEIAALKVVDG-VISQRYVTFVNP-GRSLGAYITQLTGITDG 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P    +  +   F    +   + HN +FD  F+      +N+        IDTL+
Sbjct: 63  MLADAPPIEELIEDVVKFCG--DLPLLGHNIRFDYSFLKHAA--VNRRLEFEREGIDTLT 118

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           + R       R +L+  C  + +     + H A  D+     +Y ++M    Q       
Sbjct: 119 LCRAFMTGETRKNLSCACSYFHVP--QSTAHRAQADAEAAHLLYQELMSRHGQDQPSMFD 176

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
            +   +K ++         KR K     + K    +    I+ + ++
Sbjct: 177 PKPLIYKAKRDQAAT----KRQKEYLQDLLKCHRIDITVQIEDMSRS 219


>gi|323351851|ref|ZP_08087502.1| DNA polymerase III [Streptococcus sanguinis VMC66]
 gi|322121908|gb|EFX93640.1| DNA polymerase III [Streptococcus sanguinis VMC66]
          Length = 814

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S N +II+IG V L++     +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-NAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLNDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+  +P+  +  L +LC    I++ +   H AL D+   + +++K+
Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165


>gi|167816919|ref|ZP_02448599.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 91]
          Length = 346

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG V +        T+   + P  +   P   +L GITD  
Sbjct: 16  AFVDLETTGGSAAEHRITEIGVVVVNANG--TSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F+ I    ++  +     ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|325571052|ref|ZP_08146624.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC
           12755]
 gi|325156137|gb|EGC68323.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC
           12755]
          Length = 918

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 8/174 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG DS  DRII+ G V + D    NR F   + P+ R+ S +  +L  IT++
Sbjct: 5   YAVVDLETTGTDSTIDRIIQFGCVLVQDGKIINR-FAADINPD-RRISKQIQRLTHITNQ 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F  +    ++  +  N  ++AHN  FD  F++ E  R    PL     IDT+ 
Sbjct: 63  QVSKAPYFEDVADTIYNLLS--NTIFVAHNIYFDYHFLSNEFVRCGLPPLSL-PGIDTVE 119

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +A+   P  S   L  L     I   H + H A  D+ + + +++ +     ++
Sbjct: 120 LAQVFLPTESSFRLGDLAD--SIGFRHDNPHQADSDAEVTAALFLYIEAIMREL 171


>gi|170693649|ref|ZP_02884807.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
 gi|170141431|gb|EDT09601.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
          Length = 423

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG  +   RI E+G VE+     T   +   + P  +       +L GIT+ 
Sbjct: 54  IVFVDLETTGGSTSEHRITEVGVVEVGPAGVT--RWSSLVDPQ-QPIPSFIQQLTGITNA 110

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+F +I  E +   N     ++AHNA FD GF+  E +R          ++ T+ 
Sbjct: 111 MVRGAPTFDAIAPELFARLN--GKLFVAHNASFDRGFLRGEFRRAGISFDPD--VLCTVR 166

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++R   PS  R+ L++L +R+ +  S R  H AL D+ L+   + ++
Sbjct: 167 LSRALFPSEKRHGLDALVERHSLVPSDR--HRALADADLIWQFWQRL 211


>gi|317128618|ref|YP_004094900.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473566|gb|ADU30169.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 922

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++ D+ETTG+   K DRII+I  V +++  K    F  ++ P  R   P    L  I 
Sbjct: 3   RFVIVDVETTGVSFIKGDRIIQIAFV-VIEGKKIIDRFNSYVNP-MRDIPPFIRSLTNIN 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  +KD P+F  +        +   A ++AHN  FD+ FIN EL  +    L    +IDT
Sbjct: 61  DNEVKDAPTFDLVAPRLLQALD--GAFFVAHNVDFDLSFINEELHALGYTGLS-GPVIDT 117

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +++  +P++    L+ L +   + ++H   H A  D+   + +++++M
Sbjct: 118 VELSKIAYPTADGFRLSQLSE--SLHMNHDQPHRADSDAEATALIFLEIM 165


>gi|300775432|ref|ZP_07085294.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC
           35910]
 gi|300506172|gb|EFK37308.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC
           35910]
          Length = 407

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 10/227 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIE+ G   +N+ II+I      D  K    F   + P G   +P   KL  IT +
Sbjct: 2   YSIIDIESNGAGYRNECIIDIAIYRY-DGQKITDQFISLVNPEG-DITPFVQKLTSITPK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K  P F  I     +    QN   + HN  FD   +    +R+  D    +  +DT+ 
Sbjct: 60  MVKTAPKFHEIAKRVIEI--TQNTTLVGHNIDFDYRMLRQSFKRLGYDFKINT--LDTIP 115

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A++  P      L  L K  GI +++   H A  D+    +++  ++   ++     K 
Sbjct: 116 LAKKLIPDEVSYSLGKLVKSLGIPLTNH--HRAEGDARATLELFKLLISKDTENEIIQKQ 173

Query: 188 NEDRFFKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTLGK 233
           +E+   K     +  ++  L  DK       +         +Q + K
Sbjct: 174 HEESNAKTYINKIKELTQDLPNDKGFVYFQDEAGRIMFSDYVQDINK 220


>gi|225076263|ref|ZP_03719462.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens
           NRL30031/H210]
 gi|224952387|gb|EEG33596.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens
           NRL30031/H210]
          Length = 463

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG +   DRI E+  V       T   ++  + P  R       +L GI DE 
Sbjct: 22  VVVDLETTGGNFYQDRITEVALVRFEQGRAT--HYEQLVNP-CRSIPEFVARLTGIHDET 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+ P F+ I ++       Q A  +AHN++FD  F+  E  RI+ D   PS  + T+ +
Sbjct: 79  VKNAPVFADIAADLLPLL--QGAVVVAHNSRFDYTFLRHEFARIHTDFAAPS--LCTVQL 134

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +RR +P   ++ L+S+ +R GI  ++R  H A+ D   L D Y+++
Sbjct: 135 SRRLYPEFYKHSLDSIIERTGIQTANR--HRAMTDVAALCD-YLEL 177


>gi|260440770|ref|ZP_05794586.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI2]
          Length = 255

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 15/213 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 76  DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           + ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D     +        G 
Sbjct: 132 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCDYLEYSLSA-----HGL 184

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
           +    + F+     +   +L +R +     +  
Sbjct: 185 EEWSRQCFRLTNPKLLPAALPERLRERLYGLPD 217


>gi|255656369|ref|ZP_05401778.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-23m63]
 gi|296450182|ref|ZP_06891943.1| epsilon subunit family exonuclease [Clostridium difficile NAP08]
 gi|296878563|ref|ZP_06902568.1| epsilon subunit family exonuclease [Clostridium difficile NAP07]
 gi|296260945|gb|EFH07779.1| epsilon subunit family exonuclease [Clostridium difficile NAP08]
 gi|296430370|gb|EFH16212.1| epsilon subunit family exonuclease [Clostridium difficile NAP07]
          Length = 168

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGLD      I    +  +   +  + +   + P G   S    +L  I++E
Sbjct: 4   YVVVDLETTGLDPYKGCEIIEIGITEIKNEQIVKNYSRLIKPKG-IISSFITELTHISNE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++++     +   F  +  ++    IAHNAKFD+ F+N  L+ +N +P++    I T+ 
Sbjct: 63  MVENEEPLELVLPRFRKYIGDR--TIIAHNAKFDLKFLNYYLRMLNLEPINN--YICTVE 118

Query: 129 IARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + ++   +      L + C  Y I   +   H A  D+   + +++K+
Sbjct: 119 LLKKCKSYKGKNKKLETACAYYNIENIN--AHRADSDTLATAKLFLKI 164


>gi|24379729|ref|NP_721684.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus mutans UA159]
 gi|24377689|gb|AAN58990.1|AE014965_11 putative ATP-dependent DNA helicase; DNA polymerase III, epsilon
           subunit (3'-5' exonuclease) [Streptococcus mutans UA159]
          Length = 820

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 89/175 (50%), Gaps = 10/175 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K   +  V D+E TG    +  II++G V +++  +  +T+   + P+ +  S   +
Sbjct: 1   MTEKKTRKYAVVDLEATGAS-HSASIIQVGIV-IIENEQIIQTYTTDVNPH-KPLSKAII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GITD  L+  P FS + ++ +   +  +  ++AHN KFD   +   L     + L P
Sbjct: 58  RLTGITDAQLQQAPDFSEVAADIYHLID--DCVFVAHNVKFDANLLAEHLFLEGFELLTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+  +P+  +  L +L +   I +S    H A+ D+   +++++K+
Sbjct: 116 --RVDTVELAQVFYPTFEKYSLGNLTELLKIDLSD--AHTAIADAKATAELFLKL 166


>gi|148377333|ref|YP_001256209.1| DNA polymerase III PolC [Mycoplasma agalactiae PG2]
 gi|148291379|emb|CAL58763.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae PG2]
          Length = 1459

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 6/169 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FDIETTGL  K   IIE GAV++    K     Q F+ P   K      +L GIT +
Sbjct: 425 YVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGEVTQFFIKPQ-AKIGAFTTELTGITQQ 483

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L  +  S        +D  + + A  IAHNAKFD  F+  +  R+N  P     +IDTL
Sbjct: 484 MLDSEGLSIKDGLQRIYDCLDGKVA--IAHNAKFDFNFLKEQF-RLNNVPFPNVTVIDTL 540

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +R   P+  R+ L  +  R G+       H    D+ +L++V++ ++
Sbjct: 541 IASRIGFPNYKRHKLEDVTSRLGVVYDPNVAHRGDYDAKVLANVWVNII 589


>gi|297571338|ref|YP_003697112.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931685|gb|ADH92493.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 200

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 79/166 (47%), Gaps = 8/166 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+ETTGLD   DRIIEIG V L D  + +  F   + P     S  A  +H I+
Sbjct: 1   MTYAVVDVETTGLDLATDRIIEIGIVLLSDSLEQSGYFHSLIDPQR---SITAQHIHHIS 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDPSRIID 125
              + D PSF+ +        + Q    +AHNA FD+GF+NAE  R      +D +  + 
Sbjct: 58  SAMVADAPSFALVAERVAKVLDGQ--IIVAHNAPFDLGFLNAEFARAQAGISIDRANAVC 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           TL  +R   P   + L  L  R GI       H AL D+   ++++
Sbjct: 116 TLDQSRIYCPEGSHSLIGLAARLGIETP--VAHRALADALTCTELF 159


>gi|268601098|ref|ZP_06135265.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18]
 gi|268585229|gb|EEZ49905.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18]
          Length = 264

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPQFVAELTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 85  DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 141 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182


>gi|260663059|ref|ZP_05863952.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           fermentum 28-3-CHN]
 gi|260552680|gb|EEX25680.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           fermentum 28-3-CHN]
          Length = 946

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 10/216 (4%)

Query: 9   KIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K   RII+IG V + D    N  F+  + P          +L GI +
Sbjct: 14  YAVVDLETTGTSVKTGSRIIQIGCVLVQDGQVINE-FETKINPRTV-VPLTIEQLTGIKN 71

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +KD P F  +        +  +  ++AHN  FD  F+NAE +R  + PL     IDT+
Sbjct: 72  NDVKDAPLFEDVAPTLKSLLD--DTIFVAHNVNFDFPFLNAEFERAGEAPLTI-PAIDTV 128

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-FGF 185
           ++++   P+     L  L     I   H   H A+ D+   + + I+++   + +     
Sbjct: 129 TLSQILMPTAPSFRLRDLTSYLAID--HDQPHSAVSDAVATAHLLIELLKRLADLPTITL 186

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           ++  D      +KT          + +  +  KEEL
Sbjct: 187 QSIVDLQLTLPQKTAWLFERELAKRAVEPQPLKEEL 222


>gi|327459895|gb|EGF06235.1| DNA polymerase III [Streptococcus sanguinis SK1057]
          Length = 814

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+  +P+  +  L +LC    I++ +   H AL D+   + +++K+
Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165


>gi|324993194|gb|EGC25114.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK405]
 gi|327461463|gb|EGF07794.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK1]
 gi|327489318|gb|EGF21111.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK1058]
          Length = 814

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S N +II+IG V L++     +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-NAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+  +P+  +  L +LC    I++ +   H AL D+   + +++K+
Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165


>gi|125717716|ref|YP_001034849.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit
           [Streptococcus sanguinis SK36]
 gi|125497633|gb|ABN44299.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit,
           putative [Streptococcus sanguinis SK36]
          Length = 814

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+         +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EDLDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+  +P+  +  L +LC    I++ +   H AL D+   + +++K+
Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165


>gi|56478059|ref|YP_159648.1| excinuclease Cho [Aromatoleum aromaticum EbN1]
 gi|56314102|emb|CAI08747.1| Excinuclease Cho, similar to DNA polymerase III epsilon subunit
           family [Aromatoleum aromaticum EbN1]
          Length = 478

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 90/165 (54%), Gaps = 10/165 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              DIETTG  + +D I EI  +E+ +     R +   + P+ R       ++ GI++  
Sbjct: 19  AFVDIETTGTTASHDSITEIAIIEIGEDG--VREWSSLVRPDSR-IPDYIERMTGISNHM 75

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+F+ +    +D  +E+   ++AHNA+FD GFI A  +R+  D     +++ T+ +
Sbjct: 76  VADAPTFAELAETVFDRLHER--VFVAHNARFDHGFIRAAFRRLGVDFRP--KVLCTVRL 131

Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +RR +P   R++L++L  R+G+ +   ++H AL D+  L   + +
Sbjct: 132 SRRLYPQERRHNLDALIARHGLEVE--AQHRALGDAQALWQFWQR 174


>gi|184155667|ref|YP_001844007.1| helicase [Lactobacillus fermentum IFO 3956]
 gi|183227011|dbj|BAG27527.1| helicase [Lactobacillus fermentum IFO 3956]
          Length = 943

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 13/226 (5%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           + K K R     V D+ETTG   K   RII+IG V + D    N  F+  + P       
Sbjct: 1   MAKKKRRGPVYAVVDLETTGTSVKTGSRIIQIGCVLVQDGQVINE-FETKINPRTV-VPL 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              +L GI +  +KD P F  +        +  +  ++AHN  FD  F+NAE +R  + P
Sbjct: 59  TIEQLTGIKNNDVKDAPLFEDVAPTLKSLLD--DTIFVAHNVNFDFPFLNAEFERAGEAP 116

Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           L     IDT+++++   P+     L  L     I   H   H A+ D+   + + I+++ 
Sbjct: 117 LTI-PAIDTVTLSQILMPTAPSFRLRDLTSYLAID--HDQPHSAVSDAVATAHLLIELLK 173

Query: 177 GGSQIN-FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
             + +     ++  D      +KT          + +  +  KEEL
Sbjct: 174 RLADLPTITLQSIVDLQLTLPQKTAWLFERELAKRAVEPQPLKEEL 219


>gi|332359593|gb|EGJ37411.1| DNA polymerase III [Streptococcus sanguinis SK49]
          Length = 814

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLNDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+  +P+  +  L +LC    I++ +   H AL D+   + +++K+
Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165


>gi|328868531|gb|EGG16909.1| DNA polymerase III [Dictyostelium fasciculatum]
          Length = 782

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 5/170 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I FD+ETTG  S+ D IIE+GAVEL+D  +T  TFQ +  P      PEA K+H +  
Sbjct: 401 RVICFDLETTGFGSE-DSIIEVGAVELIDGCRTGLTFQSYAKPK-APIHPEAAKVHNLNA 458

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L   P    + + F DF    +A  +AHN  FD   +  E+ R         +   T+
Sbjct: 459 YLLSSAPPIEFVLASFMDFVG--DALLVAHNLAFDHRMLIQEMMRSKIPINRSKKCFCTM 516

Query: 128 SIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMMV 176
              R+       +L+++  +  I  +  R  HGAL+DS +L+ VY  +  
Sbjct: 517 KYYRKVIKDVSYNLDAISSQLKIDKLLLRRTHGALVDSEILAIVYSHLTR 566


>gi|327473768|gb|EGF19186.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK408]
          Length = 814

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+  +P+  +  L +LC    I++ +   H AL D+   + +++K+
Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165


>gi|239616933|ref|YP_002940255.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239505764|gb|ACR79251.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 180

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 9/171 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64
           M  +V D ETTG    K   +IEI  V + D+      +F   + P  R        + G
Sbjct: 1   MEFVVIDTETTGSSPHKGAELIEIAGVVVRDWEIIYEESFNELIKPK-RHVPISITMITG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I +  L+DK     +   F+DF  ++    +  NA FD+ F++   ++I    L P+  +
Sbjct: 60  INNLMLEDKLPIEIVLPRFYDFVRDR--VLVIQNAPFDLSFLDYFGKKIGIGEL-PNPFV 116

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+S++R      R++L+ +  R GI    R  H AL D+   +  +IKM+
Sbjct: 117 DTISLSRSLF-RGRHNLDIILARLGIFCEDR--HRALGDAVATAKAFIKMV 164


>gi|327469619|gb|EGF15088.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK330]
          Length = 814

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+  +P+  +  L +LC    I++ +   H AL D+   + +++K+
Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165


>gi|240125521|ref|ZP_04738407.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           SK-92-679]
          Length = 255

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 19  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 76  DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 132 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173


>gi|297571327|ref|YP_003697101.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931674|gb|ADH92482.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 597

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 86/212 (40%), Gaps = 13/212 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    +V D+ETTG       + EIGAV++   +     F   + P G        +
Sbjct: 40  LPLHDATFLVVDVETTGEKPGLHSLTEIGAVKVRGGTVIGE-FGSLVNP-GVPIPAFITR 97

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           L GIT   +   PS   +   F +F     +  ++AHNA FD+G +      +       
Sbjct: 98  LTGITTGMVATAPSLGEVLVSFIEFVGGDPDLIFVAHNAPFDMGQLRGAASALGL-AFPN 156

Query: 121 SRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            ++IDT+ ++RR         + L++L +    TIS    H AL D+    DV   ++  
Sbjct: 157 RKVIDTVKLSRRVFMKDEVPNHKLSTLARFVNATIS--PSHRALDDARATVDVLHAIL-- 212

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
           G   + G    +D      +  VP    +K  
Sbjct: 213 GRLGSLGVTHVDDLMVAHSR--VPGKRRMKAR 242


>gi|296454533|ref|YP_003661676.1| DNA polymerase III subunit epsilon [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183964|gb|ADH00846.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 235

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 11/172 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG    +  I EIGAV + +    ++ FQ  + P  R    +   L GITD 
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            + D      +   F  +     A       + HN  FD+ F++   + I          
Sbjct: 92  MVADLDPIDKVLPRFIAWLATPAAGPTVEPIVGHNVSFDLRFLDYNTRHIAGCGFA-CAD 150

Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            DT+ I+R   P+ R+  L  L  R+GI  +   +H AL D+      +  M
Sbjct: 151 YDTMQISRALFPAQRHHRLADLIVRFGI--ADNEEHRALSDAIQTQQCFEWM 200


>gi|291044082|ref|ZP_06569798.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
 gi|291012545|gb|EFE04534.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
          Length = 264

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 15/213 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 85  DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           + ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D     +        G 
Sbjct: 141 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCDYLEYSLSA-----HGL 193

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
           +    + F+     +   +L +R +     +  
Sbjct: 194 EEWSRQCFRLTNPKLLPAALPERLRERLYGLPD 226


>gi|53720167|ref|YP_109153.1| DNA polymerase/helicase [Burkholderia pseudomallei K96243]
 gi|52210581|emb|CAH36564.1| possible DNA polymerase/helicase [Burkholderia pseudomallei K96243]
          Length = 381

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG V +        T+   + P  +   P   +L GITD  
Sbjct: 16  AFVDLETTGGSAAEHRITEIGVVVVNANG--TSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F+ I    ++  +     ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|116618479|ref|YP_818850.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097326|gb|ABJ62477.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 797

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 9/175 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+ETTG    K  RII+IG +  +   +    F+ F+ P G+    +  +L  I+ 
Sbjct: 7   FVVVDLETTGHSVKKGGRIIQIG-MTFIKKRQIVDHFESFVNP-GQLIDRQIQQLTHISQ 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +++ P F  I     +    QN   IAHN  FD  ++N E +R    PL  S  IDT+
Sbjct: 65  KDVQNAPYFEEIAPLLQNLL--QNTVIIAHNVNFDYPYLNDEFERTGF-PLLKSAAIDTV 121

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +A+   P++    L  L     IT+  ++ H A  D+H  + +++K      ++
Sbjct: 122 QLAQILFPTAPGYRLLDLTTYLNITL--KNAHRANADAHATALLFLKFWKKLEEL 174


>gi|325694226|gb|EGD36142.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK150]
          Length = 814

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLNDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+  +P+  +  L +LC    I++ +   H AL D+   + +++K+
Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165


>gi|268684113|ref|ZP_06150975.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679]
 gi|268624397|gb|EEZ56797.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679]
          Length = 264

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+TG +   DR+ E+  V+          ++  + P  +       +L GI+
Sbjct: 28  MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 84

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  + D P F+ I    +     +    +AHN++FD  F+  E  R       P+  + +
Sbjct: 85  DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++RR +P   ++ L+ + +R GI +  R  H A+ D   L D
Sbjct: 141 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182


>gi|108805769|ref|YP_645706.1| hypothetical protein Rxyl_2984 [Rubrobacter xylanophilus DSM 9941]
 gi|108767012|gb|ABG05894.1| DNA polymerase III, epsilon subunit [Rubrobacter xylanophilus DSM
           9941]
          Length = 560

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 11/159 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   +   +VFD+ETTG  ++   I E+GA++L+     +R F   + P GR   P   +
Sbjct: 26  LDLREAPYVVFDLETTGSSAREGGITELGALKLVRGRVVDR-FSTLVNP-GRPIEPFVAR 83

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +   P    +   F +F   + +  +AHNA FD  F+ A   R  +    P+
Sbjct: 84  LTGITDEMVSGAPPAREVIPRFEEF--AEGSVLVAHNAGFDCSFLAA--ARGGRGL--PN 137

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHG 159
            ++DTL +AR   P   R  L++L   +G+       H 
Sbjct: 138 PVLDTLRLARLLVPGLRRYRLSALVSHFGVR--QAPNHR 174


>gi|163756168|ref|ZP_02163283.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
 gi|161323780|gb|EDP95114.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
          Length = 454

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 9/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI      D  +    F   + P  R+  P  + L GI   
Sbjct: 2   YAIVDIETTGGKYNEEGITEIAIYRF-DGHEVVDQFISLVNPE-REIQPFVVNLTGINSR 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P F  +     +    ++   +AHNA FD   +  E +R+  +     + + T+ 
Sbjct: 60  MLRDAPKFYEVAKRIVEI--TEDCIIVAHNASFDYRILQLEFKRLGFEY--KRKSLCTVE 115

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++++  P      L  L +  GI +S R  H A  D+     ++  ++   S+ N 
Sbjct: 116 LSKKLIPEMESYKLGKLVRALGIPMSDR--HRASGDALATVKLFQLLLDKDSEKNI 169


>gi|330718588|ref|ZP_08313188.1| Rad3-related DNA helicase [Leuconostoc fallax KCTC 3537]
          Length = 798

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M+  N    +V D+ETTG    +  RII+IG +  +   K    F+ F+ P G+    + 
Sbjct: 4   MMNAND-SFVVVDLETTGQSVDRGGRIIQIG-MTFIKKRKIVDHFETFVNP-GQLIDRQI 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L  I+   ++  P F  I          +++  IAHN  FD  ++N E +R    PLD
Sbjct: 61  QQLTHISQNEVQHAPYFEEIAPVIHTLL--KDSVIIAHNVNFDYPYLNEEFERAGLSPLD 118

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               IDT+ +++   P++    L  L +   I +S+   H A  D+H  +++++ +
Sbjct: 119 I-PAIDTVMLSQILLPTAPGYRLVDLTQYLDIKLSN--AHRANEDAHATAELFLSL 171


>gi|325689970|gb|EGD31974.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK115]
          Length = 814

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+  +P+  +  L +LC    I++ +   H AL D+   + +++K+
Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165


>gi|167563688|ref|ZP_02356604.1| possible DNA polymerase/helicase [Burkholderia oklahomensis EO147]
          Length = 405

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG V +        T+   + P      P   +L GITD+ 
Sbjct: 16  AFVDLETTGGSAVEHRITEIGVVVVSADH--VSTWTTLVNPRQA-IPPFIQQLTGITDDM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F+ + S  ++  +     ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFADVASALFERLD--GKLFVAHNASFDRGFLRAEFERAGFAFNPD--VLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L  R+ +T S  ++H AL D+ L+   + K+
Sbjct: 129 SRVLFPRESRHGLDALIARHALTPS--ARHRALADADLIWQFWQKL 172


>gi|261493343|ref|ZP_05989869.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261310987|gb|EEY12164.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 221

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 20/199 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53
           + KN+ R    +V D+ET GL+++ D ++E+ A+ +      Y   ++     + P  G 
Sbjct: 20  LLKNRFRGYLPVVIDVETAGLNAQTDALLELAAITVKMDENGYLVEDQKCHFHIKPFEGA 79

Query: 54  KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105
             +PE+LK +GI  D  L+   + +    E +            Q A  +AHNA FD GF
Sbjct: 80  NINPESLKFNGIDIDNPLRGAVAENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQGF 139

Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A ++RIN  +DP  P  + DT ++A   +   +  L   C+   I+      H AL D
Sbjct: 140 LQAAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQAAQISFDGHQAHCALYD 197

Query: 164 SHLLSDVYIKMMVGGSQIN 182
           +   ++++  M+     + 
Sbjct: 198 TEKTTELFCAMVNKLKDLG 216


>gi|323485384|ref|ZP_08090732.1| DNA polymerase III PolC-type [Clostridium symbiosum WAL-14163]
 gi|323401247|gb|EGA93597.1| DNA polymerase III PolC-type [Clostridium symbiosum WAL-14163]
          Length = 263

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 10/172 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            K     +  D+ETTGLD K+D+IIEIGAV ++D  +   TF  F+ P  R+      +L
Sbjct: 20  EKEADSYVAIDLETTGLDPKHDKIIEIGAVLVIDG-EIKETFSTFVNP-RRELDGRIREL 77

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT E     P    +     +F   ++   + H+  FD  F+      +NK  +    
Sbjct: 78  TGITGEMTAGAPDIGDVIGRVVEFC--RDLPLLGHHIIFDYSFLKRAA--VNKGLVFEKS 133

Query: 123 IIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            IDTL++ RR  P   + +L +  + YGI       H AL D+ L + +  +
Sbjct: 134 GIDTLTLCRRFMPEEEKKNLENASRYYGIK--QTDAHRALADA-LTAHLLYR 182


>gi|332638894|ref|ZP_08417757.1| helicase [Weissella cibaria KACC 11862]
          Length = 940

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 13/231 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             N+    V D+ETT   S+  RII+I AV  +   K    F   + P G +     ++L
Sbjct: 1   MLNRDIYAVVDLETTRTTSETGRIIQI-AVAFVQNKKIINQFSTLVNP-GEQIPRNIIQL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT   +K  P F  +          Q   ++AHN  FD+ F+NAE +R+    L  S 
Sbjct: 59  TGITQNMVKGAPFFEDVAMTLHAML--QGTIFVAHNVNFDLPFLNAEFERVGLTAL-KST 115

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +DT+ +++   P++    L  +     +++ H   H A  D+    ++ I ++      
Sbjct: 116 ALDTVPLSQILWPTAPGYRLVDMTN--CLSLEHNHPHQADSDALATGELLIAILKRAE-- 171

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT-RITKEELDEHDKTIQTL 231
             G      +   +    +P  +    +K L   +   + L  H + I +L
Sbjct: 172 --GLPMITLQALADLPLVLPRDTKTVFEKALAKNQAEPQPLPSHLQVIDSL 220


>gi|114321155|ref|YP_742838.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227549|gb|ABI57348.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 729

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 12/197 (6%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61
            + +  +VFD ETTGL   + D I+ I  V +++    +   F+  + P GR     ++ 
Sbjct: 531 LDALNYVVFDTETTGLSPAEGDEIVSIAGVRMVNGRLLDGERFEQLVNP-GRTIPRSSIL 589

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            HGI D  + DKP   ++   F  F    ++  +AHNA FD+ FI  + +R      +P 
Sbjct: 590 FHGIHDTTVADKPRIETVLPRFHTFVG--DSVLVAHNAAFDMKFIRLKERRCGVRFDNP- 646

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++DTL ++   H   + + L ++  R G+ ++  ++H A  D+ + + V+  ++    +
Sbjct: 647 -VLDTLLLSVFLHDHTADHTLEAIAARLGVEVT--AQHTAWGDALVTARVFACLLPLLRE 703

Query: 181 INFGFKTNEDRFFKEEK 197
              G  T  D     E+
Sbjct: 704 R--GVHTLRDAVAASER 718


>gi|281492444|ref|YP_003354424.1| ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
           [Lactococcus lactis subsp. lactis KF147]
 gi|281376108|gb|ADA65599.1| ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit
           [Lactococcus lactis subsp. lactis KF147]
          Length = 794

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 91/180 (50%), Gaps = 8/180 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            KN  R  V D+E T   S  ++II+IG V L++  +   TF   + P+     P   +L
Sbjct: 1   MKNMTRYAVVDLEATDAHSSENKIIQIGIV-LVEDGEIVETFSTEVNPH-EPLLPRISEL 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G++D+ LK  P FS +  +  +     ++ ++AHNA+FD G +         +  +   
Sbjct: 59  TGLSDKQLKTAPEFSEVAGKVRELL--TDSVFVAHNARFDYGLLEKSFLNAGLE-FNEML 115

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +DT+ +AR  +P+  +  L SL ++  + ++H   H A+ D++  +++ +K+     ++
Sbjct: 116 RVDTVDLARVFYPTFEKYGLESLSEK--LDLAHDHPHAAVSDAYATAELLLKIEAKIQKL 173


>gi|251796155|ref|YP_003010886.1| hypothetical protein Pjdr2_2143 [Paenibacillus sp. JDR-2]
 gi|247543781|gb|ACT00800.1| DNA polymerase III, epsilon subunit [Paenibacillus sp. JDR-2]
          Length = 244

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 9/178 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59
               ++  +VFD+ETTG      D II  GAV +       +R F   + P  R+   + 
Sbjct: 53  TPLKELDIVVFDLETTGFYPSNGDEIISFGAVHMKGLELDESRQFYSLVNPK-RRIPRQI 111

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           ++L GIT+E ++D P    +  +F +F   +    IAH A  D  F+NA L R +K  L+
Sbjct: 112 IELTGITNEMVQDAPDLMQVLHDFMEFIGRR--LLIAHAAGHDKQFLNAALWRTSKVSLN 169

Query: 120 PSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             R++DT+ +A+   P  +   L+ L +  GI I+ R  H AL DS + + ++ + +V
Sbjct: 170 -HRVLDTMLVAKWLEPKRASYALDDLLEDCGIPITER--HHALQDSLMTAKLWQQFLV 224


>gi|126734517|ref|ZP_01750263.1| exonuclease, putative [Roseobacter sp. CCS2]
 gi|126715072|gb|EBA11937.1| exonuclease, putative [Roseobacter sp. CCS2]
          Length = 461

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 87/162 (53%), Gaps = 11/162 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
              +  +VFD ETTGLD + D ++++GAV +++     + TF+  + P GR    ++ K+
Sbjct: 268 LRDLTFVVFDSETTGLDPQKDDVVQLGAVRIVNGRIIASETFEALVNP-GRPIPAQSTKV 326

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI+D+ +   P F+ +   F  +    NA  +AHNA FD+ F+N        D +  + 
Sbjct: 327 HGISDDMVAGAPDFTVVRDNFQRY--AANAVLVAHNAPFDMAFLNRS------DAIFQNP 378

Query: 123 IIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLD 163
           ++DT+ ++      S  + L++LC R  ++I    +H AL D
Sbjct: 379 VMDTVHLSAIVFGGSAEHTLDALCARLEVSIPEDLRHTALGD 420


>gi|116511811|ref|YP_809027.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116107465|gb|ABJ72605.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 277

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 4/167 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFD ETTG  ++ + II+IGAV+  + ++    F   +       S E  +L GI  
Sbjct: 4   KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQELARFNQLVKNQRSYVSTEITQLTGIKP 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L ++P+   I  +F DF   +    +AHNA FD+ F+   +       ++  R+ DTL
Sbjct: 64  ADLLNQPTIEEILPDFLDFI--KGHLLVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++    S   L +      + ++    H AL D  + + +Y  +
Sbjct: 122 AESKKLLTMSSYALENFKDL--LEMNDLRSHDALNDCLITAKLYQYL 166


>gi|148544145|ref|YP_001271515.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri
           DSM 20016]
 gi|184153518|ref|YP_001841859.1| ATP-dependent helicase [Lactobacillus reuteri JCM 1112]
 gi|227364574|ref|ZP_03848635.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM2-3]
 gi|325682311|ref|ZP_08161828.1| ATP-dependent DNA helicase DinG [Lactobacillus reuteri MM4-1A]
 gi|148531179|gb|ABQ83178.1| DnaQ family exonuclease/DinG family helicase, putative
           [Lactobacillus reuteri DSM 20016]
 gi|183224862|dbj|BAG25379.1| ATP-dependent helicase [Lactobacillus reuteri JCM 1112]
 gi|227070411|gb|EEI08773.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM2-3]
 gi|324978150|gb|EGC15100.1| ATP-dependent DNA helicase DinG [Lactobacillus reuteri MM4-1A]
          Length = 954

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 21/233 (9%)

Query: 1   MIRKNKMR----------KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           M +++  R            V D+ETTG +    DRII+IG V + D    N  F+  + 
Sbjct: 1   MTQRSSQRTKKRDKKAPIYSVVDLETTGTNVNHGDRIIQIGCVLVQDGEIIN-HFETKIN 59

Query: 50  PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           P   K     ++L GI D+ ++  P F  I    +    E    ++AHN  FD  F+NAE
Sbjct: 60  P-REKIPRSIVQLTGIEDKDVRKAPLFEDIAGTIYSLLAE--TTFVAHNVNFDFPFLNAE 116

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168
           L+R     L     IDT+++++   P++++  L  L     I   H   H A+ D+   +
Sbjct: 117 LERAGYPSLSI-PAIDTVTLSQILLPTAKSFRLRDLTSSLHIE--HDHPHSAVSDAEATA 173

Query: 169 DVYIKMMVGGSQIN-FGFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKE 219
           D+   ++    ++     +          ++T     + L+R +     +++E
Sbjct: 174 DLLNDLLKRVQELPTLTLEKITQLKLNLPQQTAGVFDAELQRRRKSPQPLSEE 226


>gi|304373374|ref|YP_003856583.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
 gi|304309565|gb|ADM22045.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
          Length = 1457

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 11/188 (5%)

Query: 2   IRKNKM----RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           +R+N+     R +VFD+ETTGL  K + +IE GAV   +     +  +  + P   K   
Sbjct: 393 LRQNQDLEHARYVVFDLETTGLSPKFNELIEFGAVVWQNGQILEKH-EFLIKPK-EKIPS 450

Query: 58  EALKLHGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
               L GIT++ ++ +  S      +    F  QN+  +AHNA+FD G +    + +   
Sbjct: 451 YISDLTGITNQMIENEAISVEEAAIKIKQIF--QNSILVAHNARFDYGCLVEFFKELELY 508

Query: 117 PLDPSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            L+   +IDTL ++R   P   R++L  L K   I       H    D+ +L+ V+ + +
Sbjct: 509 ELE-QPVIDTLEVSRFLAPTQKRHNLKELAKNASIHYDETESHRGGYDAEVLAKVWDQFL 567

Query: 176 VGGSQINF 183
           +   + N 
Sbjct: 568 IKLIEKNI 575


>gi|167570838|ref|ZP_02363712.1| possible DNA polymerase/helicase [Burkholderia oklahomensis C6786]
          Length = 408

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG V +        T+   + P      P   +L GITD+ 
Sbjct: 16  AFVDLETTGGSAVEHRITEIGVVVVSADH--VSTWTTLVNPRQA-IPPFIQQLTGITDDM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F+ + S  ++  +     ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFADVASALFERLD--GKLFVAHNASFDRGFLRAEFERAGFAFNPD--VLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L  R+ +T S  ++H AL D+ L+   + K+
Sbjct: 129 SRVLFPRESRHGLDALIARHALTPS--ARHRALADADLIWQFWQKL 172


>gi|326773509|ref|ZP_08232792.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
 gi|326636739|gb|EGE37642.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
          Length = 465

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 12/218 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
               +   +V D+ETTG       + EIGAV++    +    F   + P G     +   
Sbjct: 15  TPLERATFVVVDLETTGGAPGARSVTEIGAVKVR-GGQVLAEFSTLVNP-GVAIPAQITM 72

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           L GIT+  +   P   +    F D+      +   +AHNA+FDVG +      +  +  +
Sbjct: 73  LTGITNAMVAGAPGVRTCVEAFLDWADLLADDVILVAHNARFDVGHLRGAAAAVGLEWPE 132

Query: 120 PSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P R++DTL++ARR         + L +L    G     R  H AL D+    DV    + 
Sbjct: 133 P-RVLDTLALARRAWTRSEVPNHKLGTLAAFVG--SQTRPTHRALDDARATVDVLHAALE 189

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214
             + +  G    ED     +       +  +    L +
Sbjct: 190 VMAPL--GVTHLEDLSTASDPVPARRRAKSRLADALPS 225


>gi|312869960|ref|ZP_07730099.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris
           PB013-T2-3]
 gi|311094545|gb|EFQ52850.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris
           PB013-T2-3]
          Length = 949

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 19/187 (10%)

Query: 1   MIRKNKMR----------KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           M +KNK R            V D+ETTG      DRII+IG V + D    N  F+  + 
Sbjct: 1   MQKKNKRRTPKRDRTAPIYSVVDLETTGTSVNHGDRIIQIGCVLVQDGQVIN-HFETKVN 59

Query: 50  PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           P   K     ++L GI D  ++  P F  +    +         ++AHN  FD  F+NAE
Sbjct: 60  P-REKIPRAVVQLTGIQDRDVRKAPLFEDVAGTIYSLL--TGTTFVAHNVNFDFPFLNAE 116

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168
           L+R    PL P + IDT+++++   P++++  L  L     I   H   H A+ D+   +
Sbjct: 117 LERAGYPPL-PIKAIDTVTLSQILLPTAKSFRLRDLTSSLQIE--HDHPHSAVSDAEATA 173

Query: 169 DVYIKMM 175
            + + ++
Sbjct: 174 SLLVDLL 180


>gi|332366322|gb|EGJ44074.1| DNA polymerase III [Streptococcus sanguinis SK1059]
          Length = 267

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+  +P+  +  L +LC    I++ +   H AL D+   + +++K+
Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165


>gi|320457724|dbj|BAJ68345.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 235

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 84/213 (39%), Gaps = 17/213 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG    +  I EIGAV +      ++ FQ  + P  R    +   L GITD 
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVRKGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            + D      +   F  +     A       + HN  FD+ F++   + I          
Sbjct: 92  MVADLDPIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFA-CAD 150

Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            DT+ I+R   P+ R+  L  L  R+GI  +   +H AL D+      +  M       +
Sbjct: 151 YDTMQISRALFPAQRHHRLADLIVRFGI--ADNEEHRALSDAIQTQQCFEWM------RH 202

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
           +  + +E    + ++    N + +   + +  R
Sbjct: 203 YVTEHHESEAIRWKQAPARNSTEILHQQLVVKR 235


>gi|325687825|gb|EGD29845.1| DNA polymerase III [Streptococcus sanguinis SK72]
          Length = 814

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG V L++     +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+  +P+  +  L +LC    I++ +   H AL D+   + +++K+
Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCGLLDISLEN--AHTALADAQATAQLFLKI 165


>gi|194015490|ref|ZP_03054106.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061]
 gi|194012894|gb|EDW22460.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061]
          Length = 240

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 17/176 (9%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNSPEA 59
               +V D+ETTGLD K D+IIEIGA+++    +         F   +    GR      
Sbjct: 3   PQTYVVLDLETTGLDHKKDQIIEIGAIKIRLGGRVREFEEVSRFHTMVALEEGRDLPEFI 62

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             L GIT+E L+D P       E  +F    +A  +A NA FD+ FI+       +  ++
Sbjct: 63  TNLTGITEEDLEDAPEEWDALDELQNFIG--DAIVVAQNAPFDLSFIS-------RGDIE 113

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           P R   T ++AR   P     L  + KR GI++     H AL D     +V+ + +
Sbjct: 114 PERFYCTRAMARFVEPELSASLKDVTKRIGISLDGH--HRALNDVEATIEVFRRYL 167


>gi|227529135|ref|ZP_03959184.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350979|gb|EEJ41270.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           vaginalis ATCC 49540]
          Length = 960

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 13/212 (6%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG      DRII++G V + D    N  F+  + P          +L GI +
Sbjct: 25  YSVVDLETTGTSVNHGDRIIQVGCVLVQDGEIIN-HFETKINPRVA-VPRHITQLTGIKN 82

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +++ P F  I    +   +     ++AHN  FD  F+NAEL+R     L   + IDT+
Sbjct: 83  NDVRNAPLFEDIAGTLYSLLS--GTIFVAHNVNFDFPFLNAELERAGYPSLSI-KAIDTV 139

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           ++++   P+     L  L     I   H   H A+ D+   + + + +M    ++     
Sbjct: 140 TLSQILMPTVKSYRLRDLTSSLSIE--HDHPHSAVSDAEATAHLLVDLMKQLREL----P 193

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
           T       E K  +P  + +  ++ L  R+  
Sbjct: 194 TLTLEKLVELKLNLPQQTTMVLEQELERRVAN 225


>gi|329942731|ref|ZP_08291510.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Chlamydophila psittaci Cal10]
 gi|332287328|ref|YP_004422229.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
 gi|313847912|emb|CBY16907.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci RD1]
 gi|325506611|gb|ADZ18249.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
 gi|328814991|gb|EGF84980.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Chlamydophila psittaci Cal10]
 gi|328914571|gb|AEB55404.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC]
          Length = 228

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 78/169 (46%), Gaps = 11/169 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG     DRIIEI A       KT  +F  ++ P       EA K+HGIT   
Sbjct: 5   IFYDTETTGTQIDKDRIIEIAAYNH----KTKESFVTYVNPEI-PIPEEASKIHGITTST 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +   P F   +  F DF   + A  +AHN   FD   +  E +R    PL   + ID+L 
Sbjct: 60  VISAPKFPEAYKHFCDFCGNE-AVLVAHNNDSFDFPLLEKECRRHALPPLSL-KTIDSLK 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            A++  P   +++L  L + YG   +    H AL D   L +V+  ++ 
Sbjct: 118 WAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLHNVFSALIG 164


>gi|330815857|ref|YP_004359562.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia gladioli BSR3]
 gi|327368250|gb|AEA59606.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia gladioli BSR3]
          Length = 388

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 88/166 (53%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  + + RI EIG VE+    +   T+   + P  +       +L GI+DE 
Sbjct: 16  AFVDLETTGGSAADHRITEIGVVEV--GPQGVSTWTSLIDPQ-QPIPAFIQQLTGISDEM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+FSSI +E   F   +   +IAHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFSSIAAEL--FARLEGRLFIAHNASFDRGFLRAEFERAGFAFNPD--MLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+ +  +  ++H AL D+ L+   + ++
Sbjct: 129 SRALFPRESRHGLDALIERHALVPN--ARHRALADADLVWQFWQRL 172


>gi|56477410|ref|YP_158999.1| nuclease subunit Cho of the excinuclease complex (UvrC homolog
           protein) [Aromatoleum aromaticum EbN1]
 gi|56313453|emb|CAI08098.1| Nuclease subunit Cho of the excinuclease complex (UvrC homolog
           protein) [Aromatoleum aromaticum EbN1]
          Length = 469

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 91/169 (53%), Gaps = 10/169 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+ETTG +  +DR+ EI AV  ++  +    ++  + P  R       +L GITDE 
Sbjct: 8   VLIDVETTGANPVSDRVTEI-AVLRIERGEIVGRWESLVNPE-RPIPALIQRLVGITDEM 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P+F+ +        +   A ++AHNA+FD GFI  E  R+ +     + ++ T+ +
Sbjct: 66  VAGAPTFAELADSVRGHLD--GAVFVAHNARFDYGFIRNEFSRLGQQF--EASVLCTVKL 121

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +R  +P   R+ L++L +R+G T    ++H A+ D+ +L   + +++ G
Sbjct: 122 SRALYPEHHRHGLDALIERHGFTC--GARHRAMGDTDVLWQ-FARLVSG 167


>gi|323527026|ref|YP_004229179.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001]
 gi|323384028|gb|ADX56119.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001]
          Length = 386

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG  +   RI E+G VE+     T   +   + P  +       +L GIT+ 
Sbjct: 15  IVFVDLETTGGSTNEHRITEVGVVEVGPTGVT--RWSSLVDPQ-QPIPSFIQQLTGITNA 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+F +I  E   F       ++AHNA FD GF+  E +R+         ++ T+ 
Sbjct: 72  MVRGAPTFEAIAPEL--FARLDGKLFVAHNASFDRGFLRGEFRRVGISFDPD--VLCTVR 127

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++R   PS  R+ L++L +R+ +  S R  H AL D+ L+   + ++
Sbjct: 128 LSRALFPSEKRHGLDALVERHALVPSDR--HRALADADLIWQFWQRL 172


>gi|281355248|ref|ZP_06241742.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
           BAA-548]
 gi|281318128|gb|EFB02148.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
           BAA-548]
          Length = 185

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 7/173 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI        +FD+ETTG+    DRI+E+ AV  +D   +   FQ  + P G +   +A+
Sbjct: 1   MIWCELGPFTIFDVETTGMSPVRDRIVELAAVR-VDRDGSLSRFQSLVNP-GVRIPAQAV 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +H ITD+ +   PSF+ +  +F +F +E  +  +AHNA+FD+GF+   L R    PL  
Sbjct: 59  AVHHITDDMVAGAPSFARMGLDFLEFASE--STLVAHNARFDLGFLQESLARTGL-PLWK 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHR-SKHGALLDSHLLSDVY 171
            + +D+L + +   P+    +L SL   + +      + H A  D      V 
Sbjct: 116 GKTLDSLRLLKTTFPNLPSYNLQSLRAYFQLETEKGMNAHRAGADVEWTRQVL 168


>gi|306829204|ref|ZP_07462394.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           ATCC 6249]
 gi|304428290|gb|EFM31380.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           ATCC 6249]
          Length = 830

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 100/235 (42%), Gaps = 19/235 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+     R +V D+E T   SK  +II++G V + +    ++ +   + P+         
Sbjct: 1   MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIVDQ-YATDVNPH-EPLDSHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+TD+ L   P FS +  + ++    ++  ++AHN +FD   +   L     +   P
Sbjct: 58  ELTGLTDQRLAAAPEFSQVAGKIFELV--KDGVFVAHNVQFDANLLAEFLFFEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +DT+ +A+  +P   + +L  LC+  GI +     H AL D+   +++ + M     
Sbjct: 116 --RVDTVELAQVLYPQFEKYNLGILCQELGIELE--QAHTALSDAQATAELLLYMRQKLF 171

Query: 180 QINFGFKTN----EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
           ++  G   +     D    E    +  +   +     F   + E ++ H   ++ 
Sbjct: 172 ELPKGLLESLLDLADNLLYESYLVIEEVYQQQ-----FLLSSSELIELHGLFLRK 221


>gi|293568616|ref|ZP_06679931.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1071]
 gi|291588576|gb|EFF20409.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1071]
          Length = 929

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 8/176 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++     +  ++AHN  FD  F+N EL R     L     IDT+ 
Sbjct: 64  RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +A+   P      L  L +  G    H + H A  D+ +   + + +     ++  
Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLIEERMRKLPI 174


>gi|257886903|ref|ZP_05666556.1| DNA polymerase III [Enterococcus faecium 1,141,733]
 gi|257822957|gb|EEV49889.1| DNA polymerase III [Enterococcus faecium 1,141,733]
          Length = 929

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 8/176 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++     +  ++AHN  FD  F+N EL R     L     IDT+ 
Sbjct: 64  RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +A+   P      L  L +  G    H + H A  D+ +   + + +     ++  
Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLIEERMRKLPI 174


>gi|227551932|ref|ZP_03981981.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecium TX1330]
 gi|257895474|ref|ZP_05675127.1| DNA polymerase III [Enterococcus faecium Com12]
 gi|293378340|ref|ZP_06624509.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecium PC4.1]
 gi|227178933|gb|EEI59905.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecium TX1330]
 gi|257832039|gb|EEV58460.1| DNA polymerase III [Enterococcus faecium Com12]
 gi|292643204|gb|EFF61345.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecium PC4.1]
          Length = 929

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 8/176 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++     +  ++AHN  FD  F+N EL R     L     IDT+ 
Sbjct: 64  RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +A+   P      L  L +  G    H + H A  D+ +   + + +     ++  
Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLIEERMRKLPI 174


>gi|29839853|ref|NP_828959.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC]
 gi|29834200|gb|AAP04837.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC]
          Length = 249

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 5/174 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M        +  D E TGLD K DRIIE  A+    + K   + +  + P+ R  S E+ 
Sbjct: 1   MTLLKDTIFVCLDCEMTGLDVKKDRIIEFAAMRFT-FDKVIDSMETLINPD-RVISAESQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++H I+D  LKD+P  + +F +   F  E +   + H+  FD+  +  E +RI +  L  
Sbjct: 59  RIHRISDAMLKDQPRIAEVFPKIKSFLKEGD-YIVGHSVGFDLQVLTQEAERIGESFLSK 117

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IIDTL +A+    S  N L +L   + +       H A+ D  +  +++   
Sbjct: 118 YYIIDTLRLAKEYGDSPNNSLEALAVHFNVPYDGN--HRAMKDVEININIFKHF 169


>gi|295677334|ref|YP_003605858.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
 gi|295437177|gb|ADG16347.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
          Length = 382

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG  +   RI E+G VE+         +   + P  +       +L GIT++
Sbjct: 15  IVFVDLETTGGSTSEHRITEVGVVEV--GPAGVSRWSSLVDPQ-QPIPSFIQQLTGITND 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+F SI    ++  N     ++AHNA FD GF+ +E +R          ++ T+ 
Sbjct: 72  MVRGAPTFESIAPALFERLN--GKLFVAHNASFDRGFLRSEFRRAGIAFDPD--VLCTVR 127

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++R   P   R+ L++L +R+ +  S R  H AL D+ L+   + ++
Sbjct: 128 LSRALFPGEKRHGLDALVERHALVPSDR--HRALADADLIWQFWQRL 172


>gi|293571662|ref|ZP_06682683.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E980]
 gi|291608332|gb|EFF37633.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E980]
          Length = 929

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 8/176 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++     +  ++AHN  FD  F+N EL R     L     IDT+ 
Sbjct: 64  RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +A+   P      L  L +  G    H + H A  D+ +   + + +     ++  
Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLIEERMRKLPI 174


>gi|227514853|ref|ZP_03944902.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum ATCC 14931]
 gi|227086785|gb|EEI22097.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum ATCC 14931]
          Length = 946

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 10/216 (4%)

Query: 9   KIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K   RII+IG V + D    N  F+  + P          +L GI +
Sbjct: 14  YAVVDLETTGTSVKTGSRIIQIGCVLVQDGQVINE-FETKINPRTV-VPLTIEQLTGIKN 71

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +K  P F  +        +  +  ++AHN  FD  F+NAE +R  + PL     IDT+
Sbjct: 72  NDVKGAPLFEDVAPTLKSLLD--DTIFVAHNVNFDFPFLNAEFERAGEAPLTI-PAIDTV 128

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-FGF 185
           ++++   P+     L  L     I   H   H A+ D+   + + I+++   + +     
Sbjct: 129 TLSQILMPTAPSFRLRDLTSYLAID--HDQPHSAVSDAVATAHLLIELLKRLADLPTITL 186

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           ++  D      +KT          + +  +  KEEL
Sbjct: 187 QSIVDLQLTLPQKTAWLFERELAKRAVEPQPLKEEL 222


>gi|257898090|ref|ZP_05677743.1| DNA polymerase III [Enterococcus faecium Com15]
 gi|257836002|gb|EEV61076.1| DNA polymerase III [Enterococcus faecium Com15]
          Length = 929

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 8/176 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++     +  ++AHN  FD  F+N EL R     L     IDT+ 
Sbjct: 64  RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +A+   P      L  L +  G    H + H A  D+ +   + + +     ++  
Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLIEERMRKLPI 174


>gi|62184729|ref|YP_219514.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3]
 gi|62147796|emb|CAH63542.1| putative DNA polymerase III epsilon chain [Chlamydophila abortus
           S26/3]
          Length = 249

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 5/166 (3%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M        +  D E TGLD K DRIIE  A+    +     + +  + P+ R  S E+ 
Sbjct: 1   MTLLKDTVFVCLDCEMTGLDVKKDRIIEFAAIRFT-FDSVIDSMETLINPD-RVISAESQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++H I+D  LKD+P  + +F +   F  E +   + H+  FD+  ++ E +RI +  L  
Sbjct: 59  RIHHISDAMLKDQPRIAEVFPKIKSFLKEGD-YIVGHSVGFDLQVLSQEAERIGETFLSK 117

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             IIDTL +A+    S  N L +L   + +       H A+ D  +
Sbjct: 118 YYIIDTLRLAKEYGDSPNNSLEALAVHFNVPYDGN--HRAMKDVEI 161


>gi|87120665|ref|ZP_01076558.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121]
 gi|86163893|gb|EAQ65165.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121]
          Length = 203

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 12/174 (6%)

Query: 7   MR---KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           MR    ++ D ETTGL   + DR IEIGAV+ L+  +    FQ  + P G   +      
Sbjct: 1   MRADSLVILDFETTGLSPDQGDRAIEIGAVK-LEAGEVVAEFQALMNP-GFSVTSFIEGY 58

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI++  L    S   +   F +F  + N   IAHNA FD  F++AE  R N   +    
Sbjct: 59  TGISNAMLAQADSCREVMESFAEFIADNN--LIAHNASFDRRFLDAEFSRFNH--VYQGD 114

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +L ++RR       + L +L     ++      H AL D+ + + +++ M+
Sbjct: 115 FSCSLLLSRRIFQDAPSHSLGALVNYINLS-GTGDFHRALYDAQMTAKLWMAML 167


>gi|328957363|ref|YP_004374749.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Carnobacterium sp. 17-4]
 gi|328673687|gb|AEB29733.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Carnobacterium sp. 17-4]
          Length = 940

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 1   MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M + N K    V DIETTG +    DR+I+ G V + D    +R F   + P       +
Sbjct: 1   MNKLNHKDTYAVVDIETTGGNVTSGDRMIQFGCVLIEDDKIVHR-FATTVNP-LTSIPKQ 58

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
              L G++++ +   P F  + +  ++    ++   +AHN +FD  F++ ELQR     L
Sbjct: 59  IEHLTGLSNKSVALAPYFEDVAATIYNLL--EDCIIVAHNIQFDYIFLSGELQRCGMPAL 116

Query: 119 DPSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             ++ IDT+ +A+   P  S   LN L  ++ I   H + H A  D+ + +++++++   
Sbjct: 117 -KNKGIDTVELAQILLPTESSYRLNDLVSKFNIE--HTNPHQADSDAAVTAELFLELKNK 173

Query: 178 GSQINF 183
             ++  
Sbjct: 174 LKELPL 179


>gi|325288090|ref|YP_004263880.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489]
 gi|324323544|gb|ADY31009.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489]
          Length = 447

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 13/171 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   + D+ETTG   + ++I EI  +   D  K    F   + P           L GI 
Sbjct: 1   MMYTIIDVETTG---QTNKITEIS-IFKFDGDKVVDEFTSLVNPEDV-IPYYITTLTGID 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + + P+F+ I  +  D    ++  ++AHN  FD   I  E + ++KD     + + T
Sbjct: 56  NAMVANAPTFAEIAQQVLDI--TEDTIFVAHNVNFDYNVIRNEFKAVDKDF--RRKKLCT 111

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           + ++R+  P      L  LCK   I I  R  H A  D+     ++ K++V
Sbjct: 112 VRLSRKLLPGHNSYSLGKLCKDLDIAIEGR--HRARGDAEATVTLF-KILV 159


>gi|332520671|ref|ZP_08397133.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332044024|gb|EGI80219.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 444

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 12/169 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   + D+ET+G   + +RI EI   +  +    +  F   + PN          L GI 
Sbjct: 1   MFYTIIDVETSG---RTNRITEISIFKYHENKIIDE-FTSLVNPNCY-IPEHITALTGID 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + + P FS I ++  +    ++  ++AHN  FD   I  E +R+  D     + + T
Sbjct: 56  NNTVANAPEFSEIANKVLEI--TKDCIFVAHNVNFDYNVIRKEFKRLEIDF--TRKKLCT 111

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + ++R+  P  R   L  LCK   I I+ R  H A  D+     ++ K+
Sbjct: 112 VRLSRKLLPGHRSYSLGKLCKDLNICINGR--HRARGDAEATVILFKKL 158


>gi|167581005|ref|ZP_02373879.1| possible DNA polymerase/helicase [Burkholderia thailandensis TXDOH]
          Length = 379

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG V +   +    T+   + P  +   P   +L GITD  
Sbjct: 16  AFVDLETTGGSAVEHRITEIGVVVV--NANHVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F+ I     +  +     ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFADIAPALLERLD--GKLFVAHNASFDRGFLRAEFERAGVAFNPD--VLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 129 SRALFPRESRHGLDALIERHALVPS--ARHRALADADLIWQFWQKL 172


>gi|322374613|ref|ZP_08049127.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C300]
 gi|321280113|gb|EFX57152.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C300]
          Length = 829

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 104/237 (43%), Gaps = 13/237 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +     R +V D+E T   SK  +II++G V + +    ++ +   + P+         +
Sbjct: 1   MNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIIDQ-YATDVNPH-EPLDSHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + ++    ++  ++AHN +FD   +   L     +   P 
Sbjct: 58  LTGLTDQRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLLAEFLFFEGYELRTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+  +P   + +L  LC+  GI + H   H AL D+   +++ + M     +
Sbjct: 115 -RVDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYMRQKLFE 171

Query: 181 INFG-FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236
           +  G  ++  +       ++   I  + + + L +     EL  H   ++   K  +
Sbjct: 172 LPKGLLESLLNLADNLLYESYLVIEEVYQQQSLLSSPDLMEL--HGLFLKKESKALV 226


>gi|314929290|gb|EFS93121.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL044PA1]
          Length = 597

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 13/190 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           ++   V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GI
Sbjct: 29  EVTFCVVDLETTGT-GEGAQITEIGAVKVRGGRVEGE-FQTLVCPTG-PIPASVQVLTGI 85

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD  ++  P  S++   + +F   ++   +AHNA+FD+GF+     + N    DP  ++D
Sbjct: 86  TDAMVRPAPPLSAVLPSWSEF--SRSTVLVAHNARFDIGFLKRAYAQHNYPWGDP-TLVD 142

Query: 126 TLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           TL++AR            L++L + +    +  S H AL D+    DV   ++      +
Sbjct: 143 TLALARSVLSRGEVRNYKLSTLSQLF--RTTTMSSHRALADARATVDVLHGLIERVG--S 198

Query: 183 FGFKTNEDRF 192
           FG  T ED  
Sbjct: 199 FGVTTLEDLL 208


>gi|308807965|ref|XP_003081293.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
 gi|116059755|emb|CAL55462.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
          Length = 1259

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 82/183 (44%), Gaps = 18/183 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ETTGL  +  RIIE+ A  L D    +  F   + P      P    L GIT+ 
Sbjct: 195 IIVFDLETTGLSKEKSRIIELAAQSLTD---PSAAFSTLVNPGRFNIPPAIKALTGITNS 251

Query: 69  FLK--DKPSFSSIFSEFWDFFNE-------QNAEWIAHNAK-FDVGFINAELQRINKDPL 118
            +   D PSF+    +F  F  +            +AHNA+ FD  FI  E +R+ ++  
Sbjct: 252 MVSAPDVPSFAMAAEQFEMFIEQVRQSRPGAPVLLVAHNARQFDAAFIQYEYRRLGRELP 311

Query: 119 DPSRIIDTLSIARRKHP---SSRNDLNSLCKRYGITISHR--SKHGALLDSHLLSDVYIK 173
              R  DTL +AR+        +  ++ L   Y I +       H A  D+ +L+D+  K
Sbjct: 312 SSWRFCDTLPLARQLLRPDGLGKFSMDVLRGHYDIELEGGDVQMHRAGTDARVLADILNK 371

Query: 174 MMV 176
           M+ 
Sbjct: 372 MLE 374


>gi|307730690|ref|YP_003907914.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003]
 gi|307585225|gb|ADN58623.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003]
          Length = 383

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG  +   RI E+G VE+     T   +   + P  +       +L GIT+ 
Sbjct: 15  IVFVDLETTGGSTNEHRITEVGVVEVGPTGVT--RWSSLVDPQ-QPIPSFIQQLTGITNA 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+F +I  E +   N     ++AHNA FD GF+  E +R+         ++ T+ 
Sbjct: 72  MVRGAPTFDAIAPELFARLN--GKLFVAHNASFDRGFLRGEFRRVGISFDPD--VLCTVR 127

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++R   PS  R+ L++L +R+ +  S R  H AL D+ L+   + ++
Sbjct: 128 LSRALFPSEKRHGLDALVERHSLVPSDR--HRALADADLIWQFWQRL 172


>gi|210621010|ref|ZP_03292395.1| hypothetical protein CLOHIR_00338 [Clostridium hiranonis DSM 13275]
 gi|210154994|gb|EEA86000.1| hypothetical protein CLOHIR_00338 [Clostridium hiranonis DSM 13275]
          Length = 276

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 14/179 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
             K+    IVFD+ETTGL++  + I EI A++  DY +    F  ++ P  +K   +   
Sbjct: 89  TTKDPECYIVFDLETTGLEAHKEAITEIAAIKF-DYDEPVEYFHTYVNPK-KKIREKITD 146

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GIT+E +   P    +   F  F ++     I+HN  FD+ FI   +  +       +
Sbjct: 147 LTGITNEMVASAPPIEYVLPNFLKFIDK--YTLISHNVSFDMSFILDPMYNLGYKK-PGN 203

Query: 122 RIIDTLSIARRKHPS-------SRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVY 171
           + IDTL++ARR           S   L  L  + G+ +       H AL D+ +   +Y
Sbjct: 204 KAIDTLALARRFMKDEDTGKRLSSYKLEDLKYQLGLPLDVYDIKSHNALYDTKVAYFLY 262


>gi|268680225|ref|YP_003304656.1| DNA polymerase III subunit epsilon [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618256|gb|ACZ12621.1| DNA polymerase III, epsilon subunit [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 260

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 8/166 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  + DIE  G     D IIEIGAV +         F      +        ++L GIT 
Sbjct: 70  KFCIVDIEANGSKPALDAIIEIGAVMVEKGKIVGE-FSSLAKTD--VLPESIVQLTGITL 126

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L   PS +S+   F  F   ++A ++AHN  FD  FI+  L+     PL  +R +DT+
Sbjct: 127 EELSFAPSLNSVLEGFRLFI--KDAVFVAHNVNFDYYFISHSLEMAGFGPLL-NRRLDTI 183

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +AR+   + +  L++L +  GIT  +   H AL D+   ++V + 
Sbjct: 184 DLARKCIEAPKYGLSALAEHLGITFENH--HRALYDAKATTEVLLH 227


>gi|62185003|ref|YP_219788.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3]
 gi|62148070|emb|CAH63824.1| DNA polymerase III, epsilon chain [Chlamydophila abortus S26/3]
          Length = 228

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 11/169 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +D ETTG     DRIIEI A   +    T  +F  ++ P       EA K+HGIT   
Sbjct: 5   IFYDTETTGTQIDKDRIIEIAAYNHI----TKESFVTYVNPEI-PIPEEASKIHGITTST 59

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +   P F   +  F +F    +A  +AHN   FD   +  E +R   +PL   + ID+L 
Sbjct: 60  VISAPKFPEAYKHFCEFCGN-DAVLVAHNNDSFDFPLMEKECRRHALEPLSL-KTIDSLK 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            A++  P   +++L  L + YG   +    H AL D   L +V+  ++ 
Sbjct: 118 WAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLHNVFSALIG 164


>gi|76363558|sp|P0C0B7|DPO3_STRPY RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|9789541|gb|AAF98345.1| DNA polymerase III alpha chain [Streptococcus pyogenes]
          Length = 1465

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 8/169 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+ETTGL + N+ +I+I A ++   +   + F  F+ P G   S    +L GITD+ L+ 
Sbjct: 431 DVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKHLQG 488

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                ++   F DF   +++  +AHNA FDVGF+NA  +R +  P     +IDTL  AR 
Sbjct: 489 AKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQPVIDTLEFARN 545

Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +P   R+ L  L KR+ +++ H   H A  D+     +    +    +
Sbjct: 546 LYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLKDARE 592


>gi|313837498|gb|EFS75212.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA2]
 gi|314971705|gb|EFT15803.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA3]
 gi|328906955|gb|EGG26721.1| GIY-YIG catalytic domain protein [Propionibacterium sp. P08]
          Length = 598

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 13/190 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           ++   V D+ETTG   +  +I EIGAV++         FQ  +CP G         L GI
Sbjct: 30  EVTFCVVDLETTGT-GEGAQITEIGAVKVRGGRVEGE-FQTLVCPTG-PIPASVQVLTGI 86

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD  ++  P  S++   + +F   ++   +AHNA+FD+GF+     + N    DP  ++D
Sbjct: 87  TDAMVRPAPPLSAVLPSWSEF--SRSTVLVAHNARFDIGFLKRAYAQHNYPWGDP-TLVD 143

Query: 126 TLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           TL++AR            L++L + +    +  S H AL D+    DV   ++      +
Sbjct: 144 TLALARSVLSRGEVRNYKLSTLSQLF--RTTTMSSHRALADARATVDVLHGLIERVG--S 199

Query: 183 FGFKTNEDRF 192
           FG  T ED  
Sbjct: 200 FGVTTLEDLL 209


>gi|255321503|ref|ZP_05362661.1| mature parasite-infected erythrocyte surface antigen [Campylobacter
           showae RM3277]
 gi|255301359|gb|EET80618.1| mature parasite-infected erythrocyte surface antigen [Campylobacter
           showae RM3277]
          Length = 311

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 106/209 (50%), Gaps = 18/209 (8%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            R+N+++     V DIET+G    + +IIEIGA++L +     + F+ F+          
Sbjct: 63  TRRNEIKDQIFCVVDIETSGG-INSGQIIEIGALKLQNGEIIGK-FETFVYAPY--VPEN 118

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             +L GIT E LK+ PS + +  +F  F  +  + ++AHN +FD GFI+A L+ +    L
Sbjct: 119 ISELTGITAEHLKNAPSLAFVMEQFKVFLGQ--SVFVAHNVRFDYGFISATLEALGYGEL 176

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +R + T+ +ARR   S +  L +L +  GI  +H   H AL D+   ++++   +   
Sbjct: 177 L-NRKLCTIDLARRTIASPKYGLGTLKEILGIDNTH---HRALSDAIAAAEIFKYSL--- 229

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK 207
            ++    +T ED    E  K+   +  LK
Sbjct: 230 QKLPSEVRTTEDLI--EFSKSAKTMKRLK 256


>gi|294619947|ref|ZP_06699320.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1679]
 gi|291593804|gb|EFF25305.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1679]
          Length = 929

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 22/201 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++     +  ++AHN  FD  F+N EL R     L     IDT+ 
Sbjct: 64  RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P      L  L +  G    H + H A  D+ +   + + +             
Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI------------- 165

Query: 188 NEDRFFKEEKKTVPNISLLKR 208
            E+R  K    T+  I+ L R
Sbjct: 166 -EERMRKLPIITLEQIARLSR 185


>gi|46190621|ref|ZP_00121275.2| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bifidobacterium longum DJO10A]
          Length = 211

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 11/172 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG    +  I EIGAV + +    ++ FQ  + P  R    +   L GITD 
Sbjct: 10  YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            + D      +   F  +     A       + HN  FD+ F++   + I          
Sbjct: 68  MVADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFA-CAD 126

Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            DT+ I+R   P+ R+  L  L  R+GI  +   +H AL D+      +  M
Sbjct: 127 YDTMQISRALFPAQRHHRLADLIVRFGI--ADNEEHRALSDAIQTQQCFEWM 176


>gi|261363839|ref|ZP_05976722.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           mucosa ATCC 25996]
 gi|288568430|gb|EFC89990.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           mucosa ATCC 25996]
          Length = 479

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 10/161 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG +   DR+ E+  +      ++   ++  + P  +       +L GI+++ 
Sbjct: 34  VVVDLETTGGNLYQDRVTEVALLRF--DGQSVCRYEWLVNP-CKPIPEFVAQLTGISNKM 90

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K  P F  I S+       Q A  +AHN++FD  F+  E +R   D   P+  + T+ +
Sbjct: 91  VKTAPLFEEIASQLLPLL--QGAVVVAHNSRFDYTFLRHEFRRAGIDFAAPA--LCTVQL 146

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           +RR +P   +++L+S+ +R  I + +R  H A+ D   LSD
Sbjct: 147 SRRLYPEFYKHNLDSIIERNAIAVENR--HRAMTDVLALSD 185


>gi|83720800|ref|YP_442134.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
 gi|167619083|ref|ZP_02387714.1| possible DNA polymerase/helicase [Burkholderia thailandensis Bt4]
 gi|257138320|ref|ZP_05586582.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
 gi|83654625|gb|ABC38688.1| possible DNA polymerase/helicase [Burkholderia thailandensis E264]
          Length = 379

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG V +   +    T+   + P  +   P   +L GITD  
Sbjct: 16  AFVDLETTGGSAVEHRITEIGVVVV--NANHVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F+ I     +  +     ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFADIAPALLERLD--GKLFVAHNASFDRGFLRAEFERAGVAFNPD--VLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 129 SRALFPRESRHGLDALIERHALVPS--ARHRALADADLIWQFWQKL 172


>gi|269219439|ref|ZP_06163293.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269211135|gb|EEZ77475.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 589

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 11/200 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
               ++  +V D+ETTG     + I EIGAV++    +T   F   + P G+        
Sbjct: 37  TPLEEVTFVVVDLETTGAKPGPESITEIGAVKVR-GGETVGEFSTLVNP-GQPIPAFITS 94

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDP 120
           L GIT       P  +++     +F     +  + AHNA+FDVG + A     +      
Sbjct: 95  LTGITTAMTARAPRIAAVIPSLIEFLCAGPSTVVAAHNARFDVGHLKAAFAGADFTW-PS 153

Query: 121 SRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            R++DT+++ARR   S       L++L    G T +    H AL D+    DV   M+  
Sbjct: 154 VRVLDTVALARRAFSSDEVPNFKLSTLAGACGATTA--PNHRALDDARATVDVLHAML-- 209

Query: 178 GSQINFGFKTNEDRFFKEEK 197
           G     G    ED     + 
Sbjct: 210 GRLGPLGVTHLEDLATATDP 229


>gi|257884118|ref|ZP_05663771.1| DNA polymerase III [Enterococcus faecium 1,231,501]
 gi|257819956|gb|EEV47104.1| DNA polymerase III [Enterococcus faecium 1,231,501]
          Length = 929

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 22/201 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++     +  ++AHN  FD  F+N EL R     L     IDT+ 
Sbjct: 64  RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P      L  L +  G    H + H A  D+ +   + + +             
Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI------------- 165

Query: 188 NEDRFFKEEKKTVPNISLLKR 208
            E+R  K    T+  I+ L R
Sbjct: 166 -EERMRKLPIITLEQIARLSR 185


>gi|294622016|ref|ZP_06701159.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium U0317]
 gi|291598406|gb|EFF29480.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium U0317]
          Length = 929

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 22/201 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++     +  ++AHN  FD  F+N EL R     L     IDT+ 
Sbjct: 64  RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P      L  L +  G    H + H A  D+ +   + + +             
Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI------------- 165

Query: 188 NEDRFFKEEKKTVPNISLLKR 208
            E+R  K    T+  I+ L R
Sbjct: 166 -EERMRKLPIITLEQIARLSR 185


>gi|227510342|ref|ZP_03940391.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227189994|gb|EEI70061.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 945

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 9/179 (5%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +K    V DIETTG D S ++RII+     L+ + K   T+   + P  R+     ++L 
Sbjct: 3   SKTTYAVVDIETTGTDMSVDNRIIQFSC-TLVAHGKIVETYVSDINPQ-REVPERIIQLT 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E LK  P+F  + S+ +   +     ++AHN  FD  F+N E QR+    LD    
Sbjct: 61  GITPERLKKAPTFDQVSSKLYKLLS--GTVFVAHNVNFDFPFLNGEFQRVGYPELDI-EA 117

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           IDT+++++   P+ S   L  L   + I   H   H A  D+   + + + ++     +
Sbjct: 118 IDTVTLSQILLPTLSSYRLQDLSAYFNII--HNHPHTADSDALATAKLLLILLRQVKML 174


>gi|69247318|ref|ZP_00604300.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase
           [Enterococcus faecium DO]
 gi|257890489|ref|ZP_05670142.1| DNA polymerase III [Enterococcus faecium 1,231,410]
 gi|258614363|ref|ZP_05712133.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Enterococcus faecium DO]
 gi|260558928|ref|ZP_05831115.1| DNA polymerase III [Enterococcus faecium C68]
 gi|293559766|ref|ZP_06676286.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1162]
 gi|314940162|ref|ZP_07847340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133a04]
 gi|314942421|ref|ZP_07849264.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133C]
 gi|314950181|ref|ZP_07853466.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0082]
 gi|314952303|ref|ZP_07855314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133A]
 gi|314994254|ref|ZP_07859557.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133B]
 gi|68194888|gb|EAN09359.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase
           [Enterococcus faecium DO]
 gi|257826849|gb|EEV53475.1| DNA polymerase III [Enterococcus faecium 1,231,410]
 gi|260075036|gb|EEW63351.1| DNA polymerase III [Enterococcus faecium C68]
 gi|291606249|gb|EFF35663.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1162]
 gi|313591341|gb|EFR70186.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133B]
 gi|313595562|gb|EFR74407.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133A]
 gi|313598821|gb|EFR77666.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133C]
 gi|313640601|gb|EFS05181.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133a04]
 gi|313643491|gb|EFS08071.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0082]
          Length = 929

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 22/201 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++     +  ++AHN  FD  F+N EL R     L     IDT+ 
Sbjct: 64  RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P      L  L +  G    H + H A  D+ +   + + +             
Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI------------- 165

Query: 188 NEDRFFKEEKKTVPNISLLKR 208
            E+R  K    T+  I+ L R
Sbjct: 166 -EERMRKLPIITLEQIARLSR 185


>gi|145589827|ref|YP_001156424.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048233|gb|ABP34860.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 466

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 12/176 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              DIETTG     DRI EIG   L +     + ++  + P          +L GI+ + 
Sbjct: 12  AFVDIETTGSHFDRDRITEIGIKTLANDGI--QVWERLINPQTF-IPQNIQRLTGISPQM 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++ +PSF  +  E       +   ++AHNA+FD GFI A  +R+  D     +++ T+ +
Sbjct: 69  VEGQPSFDQVAKELKQEL--EGKIFVAHNARFDYGFIKASFKRVGIDFKP--KVLCTVKL 124

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMMVGGSQIN 182
           +R   P   R++L+++   +G+ +S  ++H AL D+ LL   +   +   G  ++N
Sbjct: 125 SRLLFPEQPRHNLDTIINAHGLQVS--ARHRALGDADLLLQFWRVCEAKFGAEKLN 178


>gi|294789265|ref|ZP_06754503.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Simonsiella muelleri ATCC 29453]
 gi|294482690|gb|EFG30379.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Simonsiella muelleri ATCC 29453]
          Length = 450

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 84/172 (48%), Gaps = 9/172 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           ++  ++ D+E TG    +DRI EI  +      +    F   + P  ++ S    +L GI
Sbjct: 16  RLPVVILDLEATGGHFMHDRITEIAFLRF--DGQNVERFTQLVNPQ-KEISEFVTQLTGI 72

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++E + + P+F+ +          + +  +AHN++FD   +  E +R       P+  + 
Sbjct: 73  SNEMVANAPTFADVIPHILPML--RGSLLVAHNSRFDYTLLRNEFRRAGVPFATPT--LC 128

Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           T+ ++R  +P   +++L+++  R+G+T S   +H A  D  +L+D     ++
Sbjct: 129 TVKLSRTLYPNEHKHNLDAVANRFGLT-SDGKRHRAWADVAILADFLQAALL 179


>gi|294616364|ref|ZP_06696157.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1636]
 gi|291590878|gb|EFF22594.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1636]
          Length = 929

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 8/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++     +  ++AHN  FD  F+N EL R     L     IDT+ 
Sbjct: 64  RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +A+   P      L  L +  G    H + H A  D+ +   + + +
Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI 165


>gi|261209451|ref|ZP_05923814.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289566622|ref|ZP_06447041.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           D344SRF]
 gi|260076579|gb|EEW64343.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289161563|gb|EFD09444.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           D344SRF]
          Length = 929

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 22/201 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++     +  ++AHN  FD  F+N EL R     L     IDT+ 
Sbjct: 64  RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P      L  L +  G    H + H A  D+ +   + + +             
Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI------------- 165

Query: 188 NEDRFFKEEKKTVPNISLLKR 208
            E+R  K    T+  I+ L R
Sbjct: 166 -EERMRKLPIITLEQIARLSR 185


>gi|227431886|ref|ZP_03913909.1| DNA-directed DNA polymerase III epsilon subunit [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352353|gb|EEJ42556.1| DNA-directed DNA polymerase III epsilon subunit [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 797

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 9/175 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+ETTG    K  RII+IG +  +   +    F+ F+ P G+    +  +L  I+ 
Sbjct: 7   FVVVDLETTGHSVKKGGRIIQIG-MTFIKKRQIVDHFESFVNP-GQLIDRQIQQLTHISQ 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +++ P F  I     +    QN   IAHN  FD  ++N E +R     L  S  IDT+
Sbjct: 65  KDVQNAPYFEEIAPLLQNLL--QNTVIIAHNVNFDYPYLNDEFERTGFQLL-KSAAIDTV 121

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +A+   P +    L  L     IT+  ++ H A  D+H  + +++K      ++
Sbjct: 122 QLAQILFPMAPGYRLLDLTTYLNITL--KNAHRANADAHATALLFLKFWKKLEEL 174


>gi|314997169|ref|ZP_07862155.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133a01]
 gi|313588743|gb|EFR67588.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133a01]
          Length = 929

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 22/201 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++     +  ++AHN  FD  F+N EL R     L     IDT+ 
Sbjct: 64  RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P      L  L +  G    H + H A  D+ +   + + +             
Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI------------- 165

Query: 188 NEDRFFKEEKKTVPNISLLKR 208
            E+R  K    T+  I+ L R
Sbjct: 166 -EERMRKLPIITLEQIARLSR 185


>gi|257883091|ref|ZP_05662744.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257818749|gb|EEV46077.1| DNA polymerase III [Enterococcus faecium 1,231,502]
          Length = 929

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 22/201 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++     +  ++AHN  FD  F+N EL R     L     IDT+ 
Sbjct: 64  RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P      L  L +  G    H + H A  D+ +   + + +             
Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI------------- 165

Query: 188 NEDRFFKEEKKTVPNISLLKR 208
            E+R  K    T+  I+ L R
Sbjct: 166 -EERMRKLPIITLEQIARLSR 185


>gi|257879980|ref|ZP_05659633.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|257894416|ref|ZP_05674069.1| DNA polymerase III [Enterococcus faecium 1,231,408]
 gi|257814208|gb|EEV42966.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|257830795|gb|EEV57402.1| DNA polymerase III [Enterococcus faecium 1,231,408]
          Length = 929

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 22/201 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++     +  ++AHN  FD  F+N EL R     L     IDT+ 
Sbjct: 64  RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P      L  L +  G    H + H A  D+ +   + + +             
Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI------------- 165

Query: 188 NEDRFFKEEKKTVPNISLLKR 208
            E+R  K    T+  I+ L R
Sbjct: 166 -EERMRKLPIITLEQIARLSR 185


>gi|307297299|ref|ZP_07577105.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916559|gb|EFN46941.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 185

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 11/178 (6%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGIT 66
            +V D ETTG    + DRI+EI A+ +      +  +FQ  + P       +   +HG+ 
Sbjct: 5   YLVIDTETTGSSPLEGDRILEIAAIPVYGNKILHNLSFQSLVNP-LVMIPAQITGIHGLK 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E + D+P+ + +F  F ++     A  + HN   D+ F +   +     PL  +  IDT
Sbjct: 64  NEDVLDEPTMAEVFPRFRNYVG--GATIVGHNIVNDMTFFDIASKETGILPLANN-YIDT 120

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---MVGGSQI 181
           + IA          L S+ KR  I       H A+ D+ + + V++ +   + G SQ+
Sbjct: 121 IDIAHEVFSEGPYGLKSIAKRLRIR--DVPTHRAMDDARVTAKVFLALARRLGGISQM 176


>gi|167854538|ref|ZP_02477319.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Haemophilus parasuis 29755]
 gi|219872178|ref|YP_002476553.1| ribonuclease T [Haemophilus parasuis SH0165]
 gi|167854293|gb|EDS25526.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Haemophilus parasuis 29755]
 gi|219692382|gb|ACL33605.1| ribonuclease T [Haemophilus parasuis SH0165]
          Length = 216

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 21/209 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53
           + KN+ R    +V D+ET GL+++ D ++EI A+ L      Y   +  F   + P    
Sbjct: 11  LLKNRFRGYLPVVVDVETGGLNAQTDALLEIAAITLKMDDDGYLHLDEKFHRHVKPFENA 70

Query: 54  KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105
             +PEALK++GI  D   +         +E +            Q A  +AHNA FD  F
Sbjct: 71  NINPEALKVNGIDVDNAERGAVPEDIAITEMFKMVRKAVKDNGCQRAVIVAHNATFDQAF 130

Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A ++RIN  +DP  P  + DT ++A   +   +  L   C+   I    +  H AL D
Sbjct: 131 LQAAVKRINTKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAQIPFDGKQAHSALYD 188

Query: 164 SHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
           +   ++++  M+     +  GF   + R 
Sbjct: 189 TERTAELFCAMVNKLKDLG-GFPDLKARM 216


>gi|163847184|ref|YP_001635228.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525025|ref|YP_002569496.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl]
 gi|163668473|gb|ABY34839.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222448904|gb|ACM53170.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl]
          Length = 951

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 15/205 (7%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N    +  D+ETTGL S  D IIE+ AV    +   +R F+  + P       +  +L 
Sbjct: 1   MNNRIYVAIDVETTGLQSGLDEIIEVAAVTFRGHEILDR-FEQLVRPRQA-VPLKITRLT 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI    L   P F+ I ++   F   +    + H+  FD+  + A+  + N        +
Sbjct: 59  GIDPAALAQAPRFNEIGADLARFIGNR--PIVGHSIGFDLTMLRAQGMQFN------QPV 110

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            DT  +A    P  S   L++L    GI   H   H AL D+ + + ++   M+    + 
Sbjct: 111 YDTFELATLLLPQVSSYKLSALAAHLGIP--HPDAHRALNDAEVTARLFA--MLSERMLQ 166

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLK 207
               T  +      K   P   L +
Sbjct: 167 LDLATLSEMVRLMGKIGTPLRDLFE 191


>gi|227505453|ref|ZP_03935502.1| possible exonuclease, RNase T and DNA polymerase III
           [Corynebacterium striatum ATCC 6940]
 gi|227197946|gb|EEI77994.1| possible exonuclease, RNase T and DNA polymerase III
           [Corynebacterium striatum ATCC 6940]
          Length = 1118

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 95/231 (41%), Gaps = 22/231 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D ETTG  S  DR+IEIG V L    +   T++  + P   ++ P +  +H IT 
Sbjct: 6   RYAVVDFETTGFGS-TDRVIEIGVVLLDHNREVESTWETLVQPQ--RDIPNSF-VHHITP 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDT 126
             + D P F  +  EF+D  N +    +AHNA F+V F+  E   +     +     +DT
Sbjct: 62  TDVVDAPLFGEVAGEFFDLLNGR--TVVAHNAPFEVRFLQREFSNLGVAWPNYGAWVVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
             + ++ +P     L    K  GIT +    H AL D+   ++++  ++  G        
Sbjct: 120 KRLFQQTYPGEGTTLEHALKVVGITNA--RPHSALADTLATAELFAWLVSQG-------- 169

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD--KTIQTLGKNA 235
              D        T+P      R   L      E+L  H   + +  L   A
Sbjct: 170 --NDVVISSRAITLPPHEFPARGALLPRTALAEDLT-HKRGEWLARLADTA 217


>gi|217076887|ref|YP_002334603.1| DNA polymerase III PolC-type [Thermosipho africanus TCF52B]
 gi|217036740|gb|ACJ75262.1| DNA polymerase III PolC-type [Thermosipho africanus TCF52B]
          Length = 186

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGIT 66
             V D ETTGL+    DRIIEI  V +       +  +   + PN R       K+HGI+
Sbjct: 7   YCVMDTETTGLNPYFGDRIIEIAIVPVYKNKIVKKWIYHSLVNPNIR-IPALTEKIHGIS 65

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ + D PS  +I S    +   +   ++ HNA  D+ FI+   + I + P++  R IDT
Sbjct: 66  NDAITDAPSLENIISNVRAY--AKGTIFVMHNAYVDLSFIDIATKEIGEFPIN-FRYIDT 122

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L I++  + + +  L SL K + I  + +  H AL D+ L + V++K+
Sbjct: 123 LEISQVLY-NKKRSLESLVKEFKI--ADKVPHRALEDAILTAKVFLKL 167


>gi|125624340|ref|YP_001032823.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124493148|emb|CAL98112.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071124|gb|ADJ60524.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 277

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 4/167 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFD ETTG  ++ + II+IGAV+  + ++    F   +       S E  +L GI  
Sbjct: 4   KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQELARFNQLVKNQRSYVSTEITQLTGIKP 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L ++P+   I  +F DF   +    +AHNA FD+ F+   +       ++  R+ DTL
Sbjct: 64  ADLLNQPTIEEILPDFLDFI--KGHLVVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++    S   L +      + ++    H AL D  + + +Y  +
Sbjct: 122 AESKKLLTMSSYALENFKDL--LEMNDLRSHDALNDCLITAKLYQYL 166


>gi|108800255|ref|YP_640452.1| hypothetical protein Mmcs_3289 [Mycobacterium sp. MCS]
 gi|119869383|ref|YP_939335.1| hypothetical protein Mkms_3351 [Mycobacterium sp. KMS]
 gi|108770674|gb|ABG09396.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
 gi|119695472|gb|ABL92545.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
          Length = 630

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 20/214 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN---DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           +       +V D+ETTG  +     D I EIGAV++             + P GR   P+
Sbjct: 23  LSLRDTTFVVVDLETTGGRATGERPDAITEIGAVKVRGGEVLGE-LATLVDP-GRAIPPQ 80

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + L GIT   +   P   S+   F +F   + +  +AHNA FD+GF+ A  ++      
Sbjct: 81  IVSLTGITTAMVCAAPRIESVLPAFLEF--ARGSVLVAHNAGFDIGFLRAAAEQCALTWP 138

Query: 119 DPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P  ++ T+ +ARR           L++L + +    +    H AL D+    DV   ++
Sbjct: 139 RP-PVLCTVKLARRVLTRDEAPSVRLSALAQLFRAKTT--PTHRALDDARATVDVLHGLI 195

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
                 N G  T     + + +  +P+++  +R 
Sbjct: 196 E--RIGNQGVHT-----YTDLRAYLPDVTPAQRR 222


>gi|307704598|ref|ZP_07641501.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK597]
 gi|307621843|gb|EFO00877.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK597]
          Length = 816

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +R +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIVDR-YTTDVNPH-EPLDAHIQELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMAQLPKGL 176


>gi|293553821|ref|ZP_06674436.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1039]
 gi|291602027|gb|EFF32264.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1039]
          Length = 929

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 22/201 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG + K DRII+ G V +     T+R F + + P GRK S +   L GIT++
Sbjct: 6   YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +    ++     +  ++AHN  FD  F+N EL R     L     IDT+ 
Sbjct: 64  RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P      L  L +  G    H + H A  D+ +   + + +             
Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI------------- 165

Query: 188 NEDRFFKEEKKTVPNISLLKR 208
            E+R  K    T+  I+ L R
Sbjct: 166 -EERMRKLPIITLEQIARLSR 185


>gi|126700009|ref|YP_001088906.1| putative DNA polymerase III subunit epsilon [Clostridium difficile
           630]
 gi|254975983|ref|ZP_05272455.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-66c26]
 gi|255093371|ref|ZP_05322849.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           CIP 107932]
 gi|255101551|ref|ZP_05330528.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-63q42]
 gi|255307420|ref|ZP_05351591.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           ATCC 43255]
 gi|255315116|ref|ZP_05356699.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-76w55]
 gi|255517786|ref|ZP_05385462.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-97b34]
 gi|255650901|ref|ZP_05397803.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-37x79]
 gi|260683972|ref|YP_003215257.1| putative DNA polymerase III subunit epsilon [Clostridium difficile
           CD196]
 gi|260687632|ref|YP_003218766.1| putative DNA polymerase III subunit epsilon [Clostridium difficile
           R20291]
 gi|306520788|ref|ZP_07407135.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-32g58]
 gi|115251446|emb|CAJ69279.1| DNA polymerase III, epsilon subunit [Clostridium difficile]
 gi|260210135|emb|CBA64288.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           CD196]
 gi|260213649|emb|CBE05485.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           R20291]
          Length = 168

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 5/166 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGLD      I    +  +   +  + +   + P G   S    +L  I++E
Sbjct: 4   YVVVDLETTGLDPYKGCEIIEIGITEIKNEQIVKNYSRLIKPKG-IISSFITELTHISNE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++++     +   F  +  ++    IAHNAKFD+ F+N  L+ ++ +P++       L 
Sbjct: 63  MVENEEPLELVLPRFRKYIGDR--TIIAHNAKFDLKFLNYYLRMLDLEPINNYICTVELL 120

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              + +      L + C  Y I   +   H A  D+   + +++K+
Sbjct: 121 KKCKSYKGKNKKLETACAYYNIENIN--AHRADSDTLATAKLFLKI 164


>gi|119718032|ref|YP_924997.1| exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
 gi|119538693|gb|ABL83310.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
          Length = 405

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 98/254 (38%), Gaps = 28/254 (11%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             + D+ETTGL   K+DRI+EIG +E+ D     R +   + P  R   P    +HGIT 
Sbjct: 4   YTIIDLETTGLFPQKHDRIVEIGLIEVSDSGAIEREWATLVNPQ-RDVGP--THIHGITA 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P+F  +          +    +AHNA+FD  F++ E +R +     P+  + T+
Sbjct: 61  RDVLDAPTFQEVAPYLIGSLAGR--TLVAHNARFDTQFLDYEFERASVGTRPPTPSLCTM 118

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            ++      +   L   C    +   H  +H AL D+  ++ +    +V   +       
Sbjct: 119 QLSSSYLRGASRKLKDCCVAANVP--HADEHTALGDARAVAGLLNYYLVNTDRPVPWSAV 176

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE----------------HDKTIQTL 231
            E           P      R + +    T  E                    +  +  L
Sbjct: 177 LESTRRHWWPAPGPT---PGRPRSVLRSATPREPAAWLDRITSTLPRNPNPMVEAYLDVL 233

Query: 232 GKNAIWDRYISSNQ 245
            + A+ D Y+S+++
Sbjct: 234 -EQALLDGYLSAHE 246


>gi|134292561|ref|YP_001116297.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
 gi|134135718|gb|ABO56832.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 205

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            V D ETTGL     DR  EI  + L D    +R +Q  +   GR+   + + L GIT+E
Sbjct: 5   AVLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLMN-AGRRIPSDVVALTGITNE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  S +  E   F        +AHNA FD  F  AEL  +      P     T+ 
Sbjct: 63  MIATAPPVSKVMKEAAAFVGSH--PVVAHNAGFDKRFWQAELGSLGVAADHPFA--CTML 118

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +ARR +P +R + L+SL     +  + R  H A++D+ + S ++ +M
Sbjct: 119 VARRLYPHARSHRLSSLADLLRLPQAGR-AHRAMVDAEIASHLWCRM 164


>gi|330723726|gb|AEC46096.1| DNA polymerase III PolC [Mycoplasma hyorhinis MCLD]
          Length = 1457

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 11/188 (5%)

Query: 2   IRKNKM----RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           +R+N+     R +VFD+ETTGL  K + +IE GAV   +  +T    +  + P   K   
Sbjct: 393 LRQNQDLEHARYVVFDLETTGLSPKFNELIEFGAVVWQNG-QTLEKHEFLIKPK-EKIPS 450

Query: 58  EALKLHGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
               L GIT++ ++ +  S      +    F  QN+  +AHNA+FD G +    + +   
Sbjct: 451 YISDLTGITNQMIENEAISVEEAAIKIKQIF--QNSILVAHNARFDYGCLVEFFKELELY 508

Query: 117 PLDPSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            L+   +IDTL ++R   P   R++L  L K   I       H    D+ +L+ V+ + +
Sbjct: 509 ELE-QPVIDTLEVSRFLAPTQKRHNLKELAKNASIHYDETESHRGGYDAEVLAKVWDQFL 567

Query: 176 VGGSQINF 183
           +   + N 
Sbjct: 568 IKLIEKNI 575


>gi|307709092|ref|ZP_07645551.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK564]
 gi|307620038|gb|EFN99155.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK564]
          Length = 816

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIVD-HYSTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPEMEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKIAQLPKGL 176


>gi|317128725|ref|YP_004095007.1| exonuclease RNase T and DNA polymerase III [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473673|gb|ADU30276.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           cellulosilyticus DSM 2522]
          Length = 242

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 9/185 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEA 59
           I  +K+  +VFD+ETTG    N DRI+ IG +++      +  TF   +  NG   S E 
Sbjct: 50  IPFSKLDVVVFDLETTGFYPNNGDRILSIGGIKVKGDKVIDSETFYSLINSNGG-VSEEI 108

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            KL  IT++ L + P  + +   F+ F +      +AH+A  +  F+      I K   +
Sbjct: 109 TKLTNITEKDLIEAPPINDVLQNFYTFMS--GCTLVAHHANHERSFMQHMTWSILKSRFE 166

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             RIIDT  + +   P+     L+  C  YGITI  R  H AL D+   + ++ + +   
Sbjct: 167 -HRIIDTAFLTKIVEPNKNLVSLDECCDHYGITIKKR--HHALYDAIATAQLWTESVREI 223

Query: 179 SQINF 183
             + F
Sbjct: 224 QNLGF 228


>gi|240047815|ref|YP_002961203.1| DNA polymerase III PolC [Mycoplasma conjunctivae HRC/581]
 gi|239985387|emb|CAT05400.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae]
          Length = 1455

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 7/171 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFD+ETTGL    + IIE GAV + D  +T  + Q F+         E  K+  IT 
Sbjct: 400 RYVVFDLETTGLSPVYNEIIEFGAVVIQDGIQT-ESHQFFVK-AKEPIPTEITKITNITQ 457

Query: 68  EFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           E + ++   +   F         +++  +AHNAKFD  F+    ++     +D   IIDT
Sbjct: 458 EMVDEQGIEATEAFYRISKII--KDSILVAHNAKFDFNFLAELFKKEASMTID-QPIIDT 514

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           L ++R  +PS + + L ++ K  G+       H A  D+ +LS V++  + 
Sbjct: 515 LQVSRFLNPSQKSHSLKNVSKLIGLYYDETVAHRADYDAEILSKVWLNFLT 565


>gi|118473161|ref|YP_890494.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
           MC2 155]
 gi|118174448|gb|ABK75344.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
           MC2 155]
          Length = 337

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 100/247 (40%), Gaps = 32/247 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG      RI+ + A+ + D      +    L P      P    +HG+T E
Sbjct: 24  WAVVDVETTGFRPGQARIVSVAALAVGDDGSVEHSMSSLLNPG---VDPGPTHVHGLTAE 80

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+ +P F+ +  E  +    +    +AHNA FD  F+ AE + +  + L     + T+ 
Sbjct: 81  MLEGQPCFADVVDELIEVL--RGRTLVAHNAGFDYSFLAAEAELVGAE-LPIDTAMCTVE 137

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY---------------I 172
           +ARR    + N  L +L   +G+  +    H AL D+ +L+ +                +
Sbjct: 138 LARRLELGTENLRLETLAAHWGV--TQMKPHDALDDALVLAQILKPTLARARDRKVWLPL 195

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVP----NISLLKRDKPLF----TRITKEELDEH 224
           + +      N     +E R  K E   +P    N       +PL       ++ E +  H
Sbjct: 196 RQLTRKRWPNGHVTHDELRPLKVEASRLPCRYANPGPFVAGRPLVQGMRVALSAEVVRTH 255

Query: 225 DKTIQTL 231
           ++ ++ +
Sbjct: 256 EELLERV 262


>gi|330793394|ref|XP_003284769.1| hypothetical protein DICPUDRAFT_75736 [Dictyostelium purpureum]
 gi|325085263|gb|EGC38673.1| hypothetical protein DICPUDRAFT_75736 [Dictyostelium purpureum]
          Length = 501

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 5/173 (2%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K R I FD+ET+G  ++ D IIEIGAVEL+D  +T   FQ +  P   +  P A ++H +
Sbjct: 286 KGRVICFDLETSGFSAE-DSIIEIGAVELIDGCRTGVIFQSYAKPK-AQIHPRAEEIHQL 343

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  L+  P    +   F D+    ++  IAHN  FD   +  EL R      +      
Sbjct: 344 NNYLLQYSPPIEVMLCSFMDWVG--DSPLIAHNLSFDKRMLLQELVRYKIPFDNDHICFC 401

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMMVG 177
           T+   R+ +      L+S+ ++  I  +  R  HGAL+D+ +LS VY  ++  
Sbjct: 402 TMKYFRKVYMGLNYSLDSVSQKLKINKLLLRKTHGALVDAEILSIVYTHLLTA 454


>gi|322833483|ref|YP_004213510.1| ribonuclease T [Rahnella sp. Y9602]
 gi|321168684|gb|ADW74383.1| ribonuclease T [Rahnella sp. Y9602]
          Length = 238

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 22/217 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L      + +++ T    + P  G    P
Sbjct: 24  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEDGWLQSDETVHFHVEPFEGAILVP 83

Query: 58  EALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAE 109
           EAL  +GI     L+   S      E +    +         A  +AHNA FD  F+ A 
Sbjct: 84  EALAFNGIDPTNPLRGAVSEYEALHEIFKVIRKGMKEQNCNRAIIVAHNANFDHSFLMAA 143

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P    DT +++       +  L   C   GI       H AL D+   
Sbjct: 144 AERAGLKRNPFHPFATFDTAALSGLVL--GQTVLAKACISAGIVFDSSQAHSALYDTERT 201

Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKEEKKT 199
           ++++ +++     +GG  +    +  ED    EE + 
Sbjct: 202 AELFCELVNRWKRLGGWPLALSDEEVEDETASEENQQ 238


>gi|227501930|ref|ZP_03931979.1| possible exonuclease [Corynebacterium accolens ATCC 49725]
 gi|227077314|gb|EEI15277.1| possible exonuclease [Corynebacterium accolens ATCC 49725]
          Length = 1118

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 97/231 (41%), Gaps = 22/231 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D ETTG  S  DR+IEIG V L    +   T++  + P   ++ P +  +H IT 
Sbjct: 6   RYAVVDFETTGFGS-TDRVIEIGVVLLDHNREVESTWETLVQPQ--RDIPNSF-VHRITP 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDT 126
             + D P F  +  EF++  N +    +AHNA F+V F+  E   +     +     +DT
Sbjct: 62  TDVVDAPLFGEVAGEFFELLNGR--TVVAHNAPFEVRFLQREFSNLGVAWPNYGAWVVDT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
             + ++ +P     L    +  GIT +    H AL D+   ++++ +++  G+       
Sbjct: 120 KRLFQQTYPGEGTTLEHALEVVGITNA--RPHSALADALATAELFAQLVSQGT------- 170

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD--KTIQTLGKNA 235
              D        T+P      R   L      E+L  H   + +  L   A
Sbjct: 171 ---DVVISSRAITLPPHEFPARGALLPRTALAEDLT-HKRGEWLARLADTA 217


>gi|319950859|ref|ZP_08024742.1| DNA polymerase III [Dietzia cinnamea P4]
 gi|319435472|gb|EFV90709.1| DNA polymerase III [Dietzia cinnamea P4]
          Length = 313

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 9/209 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ET+G+    DR++ + AV + D  +    F   L P      P  + +HG+T  
Sbjct: 4   WVVVDVETSGMTPAVDRVLSVAAVVIGDDGEVVEEFATLLNPG---VDPGPVHVHGLTPA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  KP FS + +E     + +    +AHNA FD  F+ AE +R    P    R + TL 
Sbjct: 61  LLAGKPRFSDVAAELGRVLDGR--TVVAHNAAFDASFLAAEARRAGLAP-PLERFVCTLD 117

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            A R H S+ +  L++L   +G+    R+ H A  D+  L+ V+  ++   +        
Sbjct: 118 FAGRLHLSTADLKLSTLAAHFGVR--QRAAHDAHDDALALAGVFAGLLEVAAAKGVRPSV 175

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            E        +T   +S +  +     R+
Sbjct: 176 RELDAMVAHPETGYLVSTVWAEALAAPRL 204


>gi|317051112|ref|YP_004112228.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5]
 gi|316946196|gb|ADU65672.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5]
          Length = 169

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D+ETTGL   +  R+IEI AV++             L   G   S     +HGIT 
Sbjct: 4   FVAIDVETTGLSPARGARVIEIAAVKMEQGQVIAEFCS--LIQVGVPVSAATTGVHGITT 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L  +P+   I+ +F  F   ++   +AHNA FD+ F+++ELQR+     +PS    TL
Sbjct: 62  AMLAGQPAPGEIWPQFIWFI--EHHPIVAHNAPFDMRFVHSELQRLGLSMANPS--HCTL 117

Query: 128 SIARRKHPS-SRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKM 174
            + RRK+P    + L  L +   G        H AL D+ L + V+ +M
Sbjct: 118 RLGRRKYPRLPNHKLEYLAQHVLGKLPPEIQLHRALGDARLTAMVWEEM 166


>gi|242242736|ref|ZP_04797181.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis W23144]
 gi|242233872|gb|EES36184.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis W23144]
          Length = 902

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 8/176 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   +      + T+   +     +  P    L  I +E
Sbjct: 6   FAVVDLETTGNQLDYDEIIQIGITFVRQNQVID-TYHSMIR-TDLEIPPFIQALTSIEEE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ +  + +     ++  ++AHN  FD+ FI    ++ N     P R++DTL 
Sbjct: 64  MLVQAPYFNEVADDIYQLI--KDCVFVAHNISFDLNFIKKAFEKCNIQ-FKPKRVMDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           + +   P      L++L + + I +++   H A  D+   + + IK      Q++ 
Sbjct: 121 LFKIAFPTDKSYQLSALAESHHIPLNN--AHRADEDATTTAKLMIKAFEKFEQLHL 174


>gi|227524493|ref|ZP_03954542.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088363|gb|EEI23675.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           hilgardii ATCC 8290]
          Length = 945

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 9/179 (5%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +K    V DIETTG D S ++RII+     L+ + K   T+   + P  R+     ++L 
Sbjct: 3   SKTTYAVVDIETTGTDMSVDNRIIQFSC-TLVAHGKIVETYVSDINPQ-REVPERIIQLT 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E LK  P+F  + S+ +   +     ++AHN  FD  F+N E QR+    LD    
Sbjct: 61  GITPERLKKAPTFDQVSSKLYKLLS--GTVFVAHNVNFDFPFLNGEFQRVGYPELDI-EA 117

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           IDT+++++   P+ S   L  L   + I   H   H A  D+   + + + ++     +
Sbjct: 118 IDTVTLSQILLPTLSSYRLQDLSTYFNII--HNHPHTADSDALATAKLLLILLRQVKML 174


>gi|317497265|ref|ZP_07955589.1| exonuclease [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895510|gb|EFV17668.1| exonuclease [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 235

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL   +D+IIEIGAV++ D   + + +   + P   + S   + L GI+ +
Sbjct: 4   YVAFDLETTGLSPDSDQIIEIGAVKIRDGKISGK-YNCIIHPEI-EVSDFIINLTGISRD 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+          EF +F    +   + HN  FD  F+                 +DTL 
Sbjct: 62  MLRKGIPLKEGVEEFLEF--SGDLPVLGHNVMFDYKFMKMAAASFKYPFEKTG--VDTLK 117

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +AR+      N  L +LC  Y     +++ H A  D+   + V+ +M
Sbjct: 118 VARKLLTGLENKKLETLCAHYH--YVNQAAHRAYDDALATAVVFEQM 162


>gi|227513350|ref|ZP_03943399.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           buchneri ATCC 11577]
 gi|227083223|gb|EEI18535.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           buchneri ATCC 11577]
          Length = 945

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 9/179 (5%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +K    V DIETTG D S ++RII+     L+ + K   T+   + P  R+     ++L 
Sbjct: 3   SKTTYAVVDIETTGTDMSVDNRIIQFSC-TLVAHGKIVETYVSDINPQ-REVPERIIQLT 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E LK  P+F  + S+ +   +     ++AHN  FD  F+N E QR+    LD    
Sbjct: 61  GITPERLKKAPTFDQVSSKLYKLLS--GTVFVAHNVNFDFPFLNGEFQRVGYPELDI-EA 117

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           IDT+++++   P+ S   L  L   + I   H   H A  D+   + + + ++     +
Sbjct: 118 IDTVTLSQILLPTLSSYRLQDLSTYFNII--HNHPHTADSDALATAKLLLILLRQVKML 174


>gi|27468061|ref|NP_764698.1| dinG protein [Staphylococcus epidermidis ATCC 12228]
 gi|57866955|ref|YP_188602.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus epidermidis RP62A]
 gi|251810883|ref|ZP_04825356.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876111|ref|ZP_06284978.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus epidermidis SK135]
 gi|293366576|ref|ZP_06613253.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|81819394|sp|Q5HP88|DING_STAEQ RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81842831|sp|Q8CP71|DING_STAES RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|27315606|gb|AAO04740.1|AE016747_237 dinG protein [Staphylococcus epidermidis ATCC 12228]
 gi|57637613|gb|AAW54401.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus epidermidis RP62A]
 gi|251805563|gb|EES58220.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295136|gb|EFA87663.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus epidermidis SK135]
 gi|291319345|gb|EFE59714.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329725381|gb|EGG61864.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU144]
 gi|329735254|gb|EGG71546.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU045]
 gi|329737465|gb|EGG73719.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU028]
          Length = 902

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 8/176 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   +      + T+   +     +  P    L  I +E
Sbjct: 6   FAVVDLETTGNQLDYDEIIQIGITFVRQNQVID-TYHSMIR-TDLEIPPFIQALTSIEEE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ +  + +     ++  ++AHN  FD+ FI    ++ N     P R++DTL 
Sbjct: 64  MLVQAPYFNEVADDIYQLI--KDCVFVAHNISFDLNFIKKAFEKCNIQ-FKPKRVMDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           + +   P      L++L + + I +++   H A  D+   + + IK      Q++ 
Sbjct: 121 LFKIAFPTDKSYQLSALAESHHIPLNN--AHRADEDATTTAKLMIKAFEKFEQLHL 174


>gi|257869632|ref|ZP_05649285.1| DNA polymerase III [Enterococcus gallinarum EG2]
 gi|257803796|gb|EEV32618.1| DNA polymerase III [Enterococcus gallinarum EG2]
          Length = 920

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 8/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG D   DRII+ G V + D    NR F   + P+ R+ S +   L  IT++
Sbjct: 5   YAVVDLETTGTDPAIDRIIQFGCVLIQDGQVINR-FATDINPD-RRISKQIQNLTHITNQ 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K  P F  +    ++   +    ++AHN  FD  F++ EL R     L+    IDT+ 
Sbjct: 63  QVKRAPYFEDVAHTIYNLLTQ--TVFVAHNIYFDYHFLSQELIRCGMPSLEI-PGIDTVE 119

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +A+   P  S   L  L +   I   H + H A  D+ + + + + +
Sbjct: 120 LAQVFLPTESSFRLGDLAE--SIGFVHENPHQADSDAEVTAALLLYI 164


>gi|269302439|gb|ACZ32539.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Chlamydophila pneumoniae LPCoLN]
          Length = 249

 Score =  144 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 5/174 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M           D E TGLD K DRIIEI AV    +     + +  + P  R  S E+ 
Sbjct: 1   MSLLKDTVFTCLDCEMTGLDVKKDRIIEIAAVRFT-FDSVISSIEFLINPE-RVVSAESQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++H I++  L+D+P  + +F +   FF E +   + H+  FD+  ++ E++RI +  L  
Sbjct: 59  RVHHISNAMLRDQPKIAEVFPQIKAFFKEGD-YIVGHSVGFDLQVLSQEMERIGETFLSK 117

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IIDTL +A+    S  N L SL   + +       H A+ D  +  +++  +
Sbjct: 118 YTIIDTLRLAKEYGDSPNNSLESLAVHFNVPYDGN--HRAMKDVEININIFKHL 169


>gi|170733343|ref|YP_001765290.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|169816585|gb|ACA91168.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 212

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 11/178 (6%)

Query: 1   MIRKNK--MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           M   N       V D ETTGL     DR  EI  + L D    +R FQ  +   GR+   
Sbjct: 1   MTPPNSTMQTVAVLDFETTGLSPNLGDRATEIAVILLRDGQVVDR-FQSLMN-AGRRIPS 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           + + L GIT++ +   P  S +  E   F  +     +AHNA FD  F  +EL  +    
Sbjct: 59  DVVALTGITNDMIATAPPASEVMKEAAAFVGKH--AVVAHNAGFDKRFWQSELGMLGMSA 116

Query: 118 LDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                   T+ +ARR +P +R + L+SL +   +  + R  H A++D+ +   ++ ++
Sbjct: 117 DHAFA--CTMLVARRIYPDARSHRLSSLAEMLRLPQTGR-AHRAMVDAEMAGHLWCRL 171


>gi|332361545|gb|EGJ39349.1| DNA polymerase III [Streptococcus sanguinis SK1056]
          Length = 814

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N  +  V D+E TG  S + +II+IG + L++     +T++  + P+  +      +
Sbjct: 1   MTQNDYKYAVVDLEATGTGS-SAKIIQIG-IALIENGIITKTYETDVNPH-EELDEHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+ DE L   P FS + +E ++    Q+A ++AHN KFD   +   L     D L P 
Sbjct: 58  LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+  +P+  +  L +LC    I++ +   H AL D+   + +++K+
Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCGLLDISLEN--AHTALADAQATAQLFLKI 165


>gi|320531410|ref|ZP_08032377.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320136382|gb|EFW28363.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 299

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 84/218 (38%), Gaps = 12/218 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
               +   +V D+ETTG       + EIGAV++         F   + P G     +   
Sbjct: 15  TPLERATFVVVDLETTGGAPGARSLTEIGAVKVRGGQVLAD-FSTLVNP-GVAIPAQITM 72

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           L GIT+  +   P  S+    F  +      +   +AHNA+FDVG +      +  +  +
Sbjct: 73  LTGITNAMVAGAPGVSTCVEAFLSWADLLADDVVLVAHNARFDVGHLRGAAAALGLEWPE 132

Query: 120 PSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P R++DTL++AR+         + L +L    G     R  H AL D+    DV    + 
Sbjct: 133 P-RVLDTLALARKAWTRSEVPNHKLGTLAAFVG--SRTRPSHRALDDARATVDVLHAALE 189

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214
             + +  G    ED     +       +  +    L +
Sbjct: 190 VMAPL--GVTHLEDLATASDPVPAKRRAKSRLADALPS 225


>gi|301166002|emb|CBW25576.1| putative DNA polymerase III PolC-type alpha subunit [Bacteriovorax
           marinus SJ]
          Length = 295

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 99/216 (45%), Gaps = 9/216 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGL    D++IE+ A+++  Y +    F   + P   +     + +HGIT++
Sbjct: 20  IVALDLETTGLSPLIDKVIELSAIKVTPYGE--EVFDELIDPKI-EIPKFTIDIHGITND 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ K +   +  EF +F        +AHNAKFD+GFI   + +I   PL  S +  +  
Sbjct: 77  MVQGKRTLDKVLPEFINFIGS--LPLVAHNAKFDLGFIVFGMHQIGL-PLHESHVYCSCK 133

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            +R     S N  L++L     I + +   H AL D+     VY + +    + +     
Sbjct: 134 FSRYALRGSTNFKLSTLTTELEIPLENH--HRALDDAIACLKVYERGLRVFKKPDRKILN 191

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
               F  ++     +  + K+ KPL  ++  +E+ E
Sbjct: 192 EGHLFKLKDFDKQDDFEIPKKLKPLQDKVKDQEMIE 227


>gi|307702203|ref|ZP_07639163.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis
           ATCC 35037]
 gi|307624216|gb|EFO03193.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis
           ATCC 35037]
          Length = 829

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 104/237 (43%), Gaps = 13/237 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +     R +V D+E T   SK  +II++G V + +    ++ +   + P+         +
Sbjct: 1   MNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIIDQ-YATDVNPH-EPLDSHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + ++    ++  ++AHN +FD   +   L     +   P 
Sbjct: 58  LTGLTDQRLAVAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLLAEFLFFEGYELRTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +DT+ +A+  +P   + +L  LC+  GI + H   H AL D+   +++ + M     +
Sbjct: 115 -RVDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYMRQKLFE 171

Query: 181 INFG-FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236
           +  G  ++  D       ++   I  + + + L +     EL  H   ++   K  +
Sbjct: 172 LPKGLLESLLDLADNLLYESYLLIEEVYQQQSLLSSPDLMEL--HGLFLRKESKALV 226


>gi|167767436|ref|ZP_02439489.1| hypothetical protein CLOSS21_01955 [Clostridium sp. SS2/1]
 gi|167710728|gb|EDS21307.1| hypothetical protein CLOSS21_01955 [Clostridium sp. SS2/1]
 gi|291558729|emb|CBL37529.1| exonuclease, DNA polymerase III, epsilon subunit family
           [butyrate-producing bacterium SSC/2]
          Length = 235

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL   +D+IIEIGAV++ D   + + +   + P   + S   + L GI+ +
Sbjct: 4   YVAFDLETTGLSPDSDQIIEIGAVKIRDGKISGK-YNCIIHPEI-EVSDFIINLTGISRD 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+          EF +F    +   + HN  FD  F+                 +DTL 
Sbjct: 62  MLRKGIPLKEGVEEFLEF--SGDLPILGHNVMFDYKFMKMAAASFKYPFEKTG--VDTLK 117

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +AR+      N  L +LC  Y     +++ H A  D+   + V+ +M
Sbjct: 118 VARKLLTGLENKKLETLCAHYH--YVNQAAHRAYDDALATAVVFEQM 162


>gi|319400807|gb|EFV89026.1| putative dnaQ family exonuclease/DinG family helicase
           [Staphylococcus epidermidis FRI909]
          Length = 902

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 8/176 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   +      + T+   +     +  P    L  I +E
Sbjct: 6   FAVVDLETTGNQLDYDEIIQIGITFVRQNQVID-TYHSMIR-TDLEIPPFIQALTSIEEE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ +  + +     ++  ++AHN  FD+ FI    ++ N     P R++DTL 
Sbjct: 64  MLVQAPYFNEVADDIYQLI--KDCVFVAHNISFDLNFIKKAFEKCNIQ-FKPKRVMDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           + +   P      L++L + + I +++   H A  D+   + + IK      Q++ 
Sbjct: 121 LFKIAFPTDKSYQLSALAESHHIPLNN--AHRADEDATTTAKLMIKAFEKFEQLHL 174


>gi|307326641|ref|ZP_07605834.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306887625|gb|EFN18618.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 638

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 11/205 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ET+GL ++ DR++ +  + +    +    F   L P      P  +K+HG+T E L+
Sbjct: 23  VDVETSGLMARRDRVLSVAVITVGPDGEQTGEFSTLLNPGC---DPGPVKVHGLTVERLQ 79

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P+F  +          Q+   +AHNA+FD  F+  E  R  +  L  S+ + TL++ R
Sbjct: 80  GAPTFDQVAGRIGAML--QDRVLVAHNAQFDYDFLAHEFARA-RTWLPVSQRLCTLALNR 136

Query: 132 RKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           +   P+    L +L   YGI    +  H AL D+ +L+ +    +   +Q++        
Sbjct: 137 QVDPPTGDMKLGTLAAHYGIP--QQRAHDALDDTRVLAGILRASLREAAQLDLPLPLVAC 194

Query: 191 RFFKEEK--KTVPNISLLKRDKPLF 213
               E +     P      R+    
Sbjct: 195 PPRAETQFTPKPPKAPCAYRNPGRL 219


>gi|111018828|ref|YP_701800.1| DNA polymerase III [Rhodococcus jostii RHA1]
 gi|110818358|gb|ABG93642.1| probable DNA polymerase III [Rhodococcus jostii RHA1]
          Length = 649

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 88/208 (42%), Gaps = 10/208 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+ET+GL S   R++ + A+ L +     R     L P      P  + +H +T 
Sbjct: 70  RWVVVDVETSGLRSSTHRVLSVAALALREDGSVERELVTLLNPGC---DPGPVHIHNLTP 126

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P F  + ++  +  + +    +AHNA FD GF++AE++R     +   + + TL
Sbjct: 127 QRLAGAPRFEEVANDLLELLDGR--TLVAHNASFDYGFLDAEVRRAGM-TMPTRQRLCTL 183

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +++RR       + L++L   + +       H A  D+ +L++V+         +     
Sbjct: 184 ALSRRLEIDVPNHKLSTLAAHWKVR--QNRAHDAYDDALVLTEVFAHSASLAESLRLPLP 241

Query: 187 TNEDRFFKE-EKKTVPNISLLKRDKPLF 213
                  +      VP +    R+    
Sbjct: 242 VVGCADRRAVYPDRVPRVESPWRNPGRL 269


>gi|89890222|ref|ZP_01201732.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7]
 gi|89517137|gb|EAS19794.1| DNA  polymerase III, epsilon subunit [Flavobacteria bacterium
           BBFL7]
          Length = 466

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG     +R+ EI  V +   +  ++ +   + P           L GI + 
Sbjct: 8   YCVVDIETTGNRMTGNRMTEICIVRMRGDTILDK-YSSLIDPE-VLIPDYITTLTGIDNA 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F+ +  E  +F   ++  ++AHN  FD   +  E +R++ D     + + T+ 
Sbjct: 66  MVASAPVFADVAEEILNF--TKDYIFVAHNVNFDYNVLRNEFKRLHHDF--KRKKLCTVR 121

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++R   P  R   L  LC   GI + +R  H A  D+     ++ K++ 
Sbjct: 122 LSRELIPGMRSYSLGKLCDDIGIPLINR--HRAEGDTDATVILFQKLIT 168


>gi|323339821|ref|ZP_08080090.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644]
 gi|323092694|gb|EFZ35297.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644]
          Length = 968

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 9/172 (5%)

Query: 5   NKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N     V D+E TG +    +R+I+   V   + +K   TF   + P  RK   +   L 
Sbjct: 36  NLQTYAVVDLEMTGTNPNGSERLIQFSCVFT-EGNKIVNTFSTLINP-LRKIPEDVQNLT 93

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            ITD+ +K  P+F  +    +   +  +  ++AHN + D  F+N+E +RI    LD    
Sbjct: 94  NITDKDVKSAPTFDEVAGTIYALLS--DTVFVAHNIELDYRFLNSEFERIGFPKLDL-EG 150

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           IDT+ +A+   P+ +   L  L    G    H+  H A  D+ + ++++I +
Sbjct: 151 IDTVQLAQIAFPTLASYRLGDLAHFLG--FKHKHPHHADSDAFVTAELFILL 200


>gi|160937823|ref|ZP_02085182.1| hypothetical protein CLOBOL_02715 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439262|gb|EDP17015.1| hypothetical protein CLOBOL_02715 [Clostridium bolteae ATCC
           BAA-613]
          Length = 245

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D+ETTGL+++ D+I EI A+ + D       F   + P GR+       L GITD+
Sbjct: 5   YIALDLETTGLEARLDKITEIAALRVEDGR-VEERFVTLVNP-GRQLGERITALTGITDD 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P       +   F    N   + HN  FD  F+         D       IDTL 
Sbjct: 63  MVKDAPVIEDTIGDVVRFCG--NLPLLGHNILFDYAFLKRAAVNSGLDFEREG--IDTLG 118

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           I R   P   + +L   C  Y   +S  + H A  D+     +Y  MM    + +     
Sbjct: 119 ICRLFMPEDVKRNLTCACSFY--EVSQSAAHRAQADAEAAHGLYQVMMARHGEEHPEAFA 176

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236
            +   +K +++        KR K     + K    +    I  + ++ +
Sbjct: 177 AKPLIYKAKREQ----PATKRQKEYLHDLLKCHRIDVTVQIDAMSRSEV 221


>gi|193216948|ref|YP_002000190.1| DNA polymerase III PolC [Mycoplasma arthritidis 158L3-1]
 gi|193002271|gb|ACF07486.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1]
          Length = 1438

 Score =  144 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 6/206 (2%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +    +VFD+ETTGL  + + IIE GA  +++      + Q F+ P  +   P   ++ 
Sbjct: 400 LSSQTYVVFDLETTGLSPRFNEIIEFGA-SIIENGIIKESHQFFIKPT-KPIPPSITEIT 457

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            ITD  + +  S      + +D    +    +AHNAKFD+        +   D       
Sbjct: 458 KITDNTVANGYSQEEGVRKIYDILKNRIC--VAHNAKFDINVCKENFLKYGLDN-SKIIG 514

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ID+L+IAR     ++   L  + K++ +  +    H A  D+++L++V+I M++  ++  
Sbjct: 515 IDSLAIARFLIDEAKSYRLEIVAKKFNVYYARNEAHRADYDANVLANVWILMILKLAREK 574

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR 208
                NE     ++K          R
Sbjct: 575 NIRTANELAAVNDDKLFAKKFPREVR 600


>gi|209519136|ref|ZP_03267941.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
 gi|209500436|gb|EEA00487.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
          Length = 382

 Score =  144 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG  +   RI E+G VE+     T   +   + P  +       +L GIT++
Sbjct: 15  IVFVDLETTGGSTSEHRITEVGVVEVGPTGVT--RWSSLIDPQ-QPIPSFIQQLTGITND 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+F SI    ++  N     ++AHNA FD GF+ +E +R          ++ T+ 
Sbjct: 72  MVHGAPTFESIAPALYERLN--GKLFVAHNASFDRGFLRSEFRRAGLAFDPD--VLCTVR 127

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++R   P   R+ L++L +R+ +  S R  H AL D+ L+   + ++
Sbjct: 128 LSRALFPGEKRHGLDALVERHALVPSDR--HRALADADLIWQFWQRL 172


>gi|293390535|ref|ZP_06634869.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951069|gb|EFE01188.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 217

 Score =  144 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53
           I K++ R    +V D+ET GL++K D ++E+ A+ L          ++     + P  G 
Sbjct: 12  ILKHRFRGYLPVVIDVETAGLNAKTDALLELAAITLKMDENGNLLPDQKCHFHIQPFEGA 71

Query: 54  KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105
              PE+LK +GI  D  L+   S +   SE +          + Q +  +AHNA FD GF
Sbjct: 72  NIDPESLKFNGIDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNAAFDQGF 131

Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A  QR+N  ++P  P    DT +++       +  L   C+   I    +  H AL D
Sbjct: 132 LMAAAQRMNAKRNPFHPFSTFDTATLSGFMF--GQTVLVKACQAAKIPFDSQQAHSALYD 189

Query: 164 SHLLSDVYIKMMVGGSQIN 182
           +   ++++  M+    Q+ 
Sbjct: 190 TERTAELFCYMVNHLKQLG 208


>gi|298369304|ref|ZP_06980622.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sp. oral taxon 014 str. F0314]
 gi|298283307|gb|EFI24794.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sp. oral taxon 014 str. F0314]
          Length = 463

 Score =  144 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 12/176 (6%)

Query: 8   RKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R + V D+E+TG +   DRI E+  +     +   + ++  + P  +        L GIT
Sbjct: 19  RPVAVVDLESTGGNFYRDRITEVAVLRFERGA--AKRYEWLVNPQ-QPIPKFVADLTGIT 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE +   P FS I ++         A  +AHN++FD  F+  E +R   D   P+  + T
Sbjct: 76  DEAVSGAPVFSDIAADLLPLL--HGAVVVAHNSRFDYTFLRHEFRRAGMDFAAPA--LCT 131

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK-MMVGGSQ 180
           + ++RR +P   R++L+S+ +R+GI +  R  H A+ D   LSD   + ++  G++
Sbjct: 132 VQLSRRLYPQFYRHNLDSIIERFGIAVESR--HRAMADVAALSDFLERSLVEKGAE 185


>gi|323701749|ref|ZP_08113420.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533285|gb|EGB23153.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 930

 Score =  144 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGLD  +D IIEIG V+++D  +    FQ  + P G     +  +L G+ D+
Sbjct: 5   FVALDLETTGLDCWSDDIIEIGMVKVIDGQE-RDFFQSLVRPGG-PLPVKIKQLTGLKDD 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +  P F +I  +   F    +   + HN KFD  F+ A           P+ + DTL 
Sbjct: 63  DFQSAPWFQTIIPKILTFIG--DLPLVGHNIKFDRDFLAAAC-----GHQLPNDLYDTLE 115

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR   PS   + L  LCK  G+ ++   +H AL D+   + + +K++
Sbjct: 116 LARILQPSAPSHRLGELCKIAGVEVN--VEHRALDDARSSARLMLKLL 161


>gi|254247914|ref|ZP_04941235.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|124872690|gb|EAY64406.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
          Length = 212

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            V D ETTGL     DR  EI  + L D    +R FQ  +   GR+   + + L GIT++
Sbjct: 12  AVLDFETTGLSPNLGDRATEIAVILLRDGQVVDR-FQSLMN-AGRRIPSDVVALTGITND 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  S +  E   F  +     +AHNA FD  F  +EL  +            T+ 
Sbjct: 70  MIATAPPASEVMKEAAAFVGKH--AVVAHNAGFDKRFWQSELGMLGMSADHAFA--CTML 125

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +ARR +P +R + L+SL +   +  + R  H A++D+ +   ++ ++
Sbjct: 126 VARRIYPDARSHRLSSLAEMLRLPQTGR-AHRAMVDAEMAGHLWCRL 171


>gi|296876164|ref|ZP_06900218.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit
           [Streptococcus parasanguinis ATCC 15912]
 gi|296432875|gb|EFH18668.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit
           [Streptococcus parasanguinis ATCC 15912]
          Length = 817

 Score =  144 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 91/187 (48%), Gaps = 14/187 (7%)

Query: 2   IRKNKMRKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           + + K +  + D+E T  G ++K   II++G V + D   T ++++  + P+ R      
Sbjct: 1   MTRQKRKYAIVDLEATSAGSNAK---IIQVGIVIIEDGRIT-QSYETDVNPHER-LDEHI 55

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L G+TD  L+  P F+ +  E ++    ++A ++AHN KFD   +   L     +   
Sbjct: 56  KQLTGLTDARLRKAPEFAQVAKEIFELI--EDAVFVAHNVKFDANLLAEALFWEGFELTT 113

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           P   IDT+ +++  +P+  R +L +L     I + H   H AL D+   + + +K+    
Sbjct: 114 P--RIDTVELSQIFYPTLERYNLGALAAELEIELHH--AHSALADAMATAQLLLKLREKI 169

Query: 179 SQINFGF 185
           + +  G 
Sbjct: 170 ASLPRGL 176


>gi|238925353|ref|YP_002938870.1| DNA polymerase III, epsilon subunit [Eubacterium rectale ATCC
           33656]
 gi|238877029|gb|ACR76736.1| DNA polymerase III, epsilon subunit [Eubacterium rectale ATCC
           33656]
          Length = 245

 Score =  144 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 10/178 (5%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   + ++   V D+E TGL +KND+IIEIGA  +    +   T    + P         
Sbjct: 1   MSNIDNIKNYTVIDLEMTGLSAKNDKIIEIGAARVR-GGEIVDTISTLVNPKQH-IPQRV 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L GITD  +++            +F  +     +  N  FD  F+        +    
Sbjct: 59  QELTGITDSDVENAADMDEAVDNLLNFIGDD--IILGQNVTFDYSFLKQWAVNHKRTLSL 116

Query: 120 PSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +   DTL IAR+  P+ ++  L  LC+ +G+  S ++ H AL D+     ++ K++ 
Sbjct: 117 NA--YDTLKIARKCLPAEQSKKLEDLCEYFGV--SRKNAHRALDDAIETKQIFEKLLA 170


>gi|119896359|ref|YP_931572.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
 gi|119668772|emb|CAL92685.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 231

 Score =  144 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTG+  +   R  EI  V + +    +R +Q  +   G     E   L GIT+
Sbjct: 31  YAVIDFETTGMAPEHGARPTEIAVVLVRNGCVIDR-YQSLMN-AGVHVPYEIQALTGITN 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  P  + + ++  DF        +AHNA FD  F +AEL R+ +     +  + +L
Sbjct: 89  AMVRAAPPLAQVMAQAADFVGSH--ALVAHNAAFDRKFWDAELDRLGRR--READFVCSL 144

Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++RR  P S  + L +L +  G+  S R  H AL D+   + ++ ++
Sbjct: 145 LLSRRVFPDSPNHKLGTLVRTLGLPASGR-FHRALADAEATAQLFARI 191


>gi|302384787|ref|YP_003820609.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
           WM1]
 gi|302195415|gb|ADL02986.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
           WM1]
          Length = 235

 Score =  144 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 79/167 (47%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D+ETTGLD K D+IIEIGAV+++    T   FQ F+ P  RK     + L GI+D 
Sbjct: 5   YIAVDLETTGLDPKLDKIIEIGAVKVVKGQMT-EHFQTFINPF-RKLESRVIILTGISDR 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P    +  EF +F   +    + H+  FD  F+               R IDTL 
Sbjct: 63  QLEASPGIGEVIGEFLEF--AEGLPVLGHHVIFDYSFLKRAAINEGYSF--ERRGIDTLK 118

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +ARR   P  + +L + C  +GI       H AL D+     +Y +M
Sbjct: 119 LARRFMPPEEKKNLGAACGYFGIE--QTMSHRALADASAAHGLYQEM 163


>gi|89898728|ref|YP_515838.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56]
 gi|89332100|dbj|BAE81693.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56]
          Length = 249

 Score =  144 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 5/174 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M        +  D E TGLD K DRIIE  A +   +     + +  + P+ R  S E+ 
Sbjct: 1   MTLLKDTIFVCLDCEMTGLDVKKDRIIEFAA-KRFTFDNVIDSMETLINPD-RVISAESQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++H I+D  LKD+P  S +F +   F  E +   + H+  FD+  +  E +RI +  L  
Sbjct: 59  RIHRISDAMLKDQPRISEVFPKIQAFLKEGD-YIVGHSVGFDLQVLTQEAERIGETFLSK 117

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IIDTL +A+    S  N L +L   + +       H A+ D  +  +++   
Sbjct: 118 YCIIDTLRLAKEYGDSPNNSLEALAVHFNVPYDGN--HRAMKDVEININIFKHF 169


>gi|15618565|ref|NP_224851.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
           CWL029]
 gi|15836187|ref|NP_300711.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138]
 gi|16752385|ref|NP_444644.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39]
 gi|33242012|ref|NP_876953.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
           TW-183]
 gi|4376954|gb|AAD18794.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029]
 gi|8163364|gb|AAF73628.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila
           pneumoniae AR39]
 gi|8979027|dbj|BAA98862.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138]
 gi|33236522|gb|AAP98610.1| DNA polymerase III [Chlamydophila pneumoniae TW-183]
          Length = 249

 Score =  144 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 5/174 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M           D E TGLD K DRIIEI AV    +     + +  + P  R  S E+ 
Sbjct: 1   MSLLKDTVFTCLDCEMTGLDVKKDRIIEIAAVRFT-FDSVISSIEFLINPE-RVVSAESQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++H I++  L+D+P  + +F +   FF E +   + H+  FD+  +  E++RI +  L  
Sbjct: 59  RVHHISNAMLRDQPKIAEVFPQIKAFFKEGD-YIVGHSVGFDLQVLAQEMERIGETFLSK 117

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IIDTL +A+    S  N L SL   + +       H A+ D  +  +++  +
Sbjct: 118 YTIIDTLRLAKEYGDSPNNSLESLAVHFNVPYDGN--HRAMKDVEININIFKHL 169


>gi|332995649|gb|AEF05704.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2]
          Length = 710

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 9/158 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R      +V DIETTG ++  +RI EIG V+++   +   T+Q  + P  R+      +L
Sbjct: 537 RDPNQPYVVVDIETTGGNNSYNRITEIGMVKIV-AGEVVDTYQTLINPQ-RRIPATITRL 594

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI+D+ + D P F  +      F +E  A ++AHN  FD GFI  E  R+      P  
Sbjct: 595 TGISDDMVADAPLFVEVAERIASFTDE--AVFVAHNVNFDYGFIKQEFARLELPFKRP-- 650

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHG 159
            + T+   R+ +P      L +L + + I +     H 
Sbjct: 651 KLCTVREMRKVNPGLPSYSLANLTRHFDIKMEQH--HR 686


>gi|23012539|ref|ZP_00052599.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 218

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 95/206 (46%), Gaps = 26/206 (12%)

Query: 8   RKIVFDIETTGLD----------SKNDR----IIEIGA---VELLDYSKTNRTFQVFLCP 50
           R I  D ETTG             K  R    +IEIG    V   +  KT +++Q  + P
Sbjct: 12  RIIAIDAETTGFQVPTPAEIRKMPKGLRLPGIVIEIGCLELVRSEEGWKTGKSWQRRIQP 71

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
            G   S  ++++HGI+   LK+ PSF  I  EF  F  +     +AH+A+ ++ F+N E 
Sbjct: 72  GG-PVSKASVEVHGISPAELKNAPSFRDILDEFEAFIGQD--VLLAHSAENEMAFLNFEY 128

Query: 111 QRINKDPLDPS-----RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR-SKHGALLDS 164
            R  +   D         + T  ++R+  P     L+ LC R  +  S R   HGALLD+
Sbjct: 129 ARAGRCGFDEMIFSVDDFVCTQDLSRQFFPGVPGSLDVLCDRLWVDRSDRFEHHGALLDA 188

Query: 165 HLLSDVYIKMMVGGSQINFGFKTNED 190
            L ++ ++KM  G  Q +  + +  D
Sbjct: 189 ILTAEAFMKMAGGFVQDDTRYMSFGD 214


>gi|320547177|ref|ZP_08041471.1| DNA polymerase III [Streptococcus equinus ATCC 9812]
 gi|320448164|gb|EFW88913.1| DNA polymerase III [Streptococcus equinus ATCC 9812]
          Length = 827

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++ N  +  V D+E TG  +    II++G V +++  K  +T+Q  + P+    +   +
Sbjct: 1   MMQVNSQKYAVVDLEATGAHAM-AEIIQVGIV-IIENKKIVKTYQTDVNPH-EPLTEHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITDE L   P FS +  + ++  +  +  ++AHN KFD   +  +L     +   P
Sbjct: 58  NLTGITDEQLAKAPDFSQVAQKIYNMIS--DCVFVAHNVKFDANLLAEKLFLEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             ++DT+ +++  +P+  +  L  L     + ++    H A+ D++  + + +K+
Sbjct: 116 --LVDTVELSQVFYPTLEKYTLGHLADVLQLDLTD--AHTAISDAYATAQLLLKL 166


>gi|313672047|ref|YP_004050158.1| DNA polymerase iii, epsilon subunit [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312938803|gb|ADR17995.1| DNA polymerase III, epsilon subunit [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 201

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 98/177 (55%), Gaps = 10/177 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALK 61
            +++  +VFD+ETTGL+  N D+IIE+GA ++ +        F   + P+    +    +
Sbjct: 12  LDEVSFVVFDLETTGLNPDNGDQIIEMGAFKIEEGFKLVRDPFHTMVKPDIFIPN----E 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT+  LK+ P   +   +F DF   + +  +AH A  D+ F+ A ++    D     
Sbjct: 68  IHGITEMELKNAPDICTALYDFIDF--SRGSVLVAHKASKDIAFLRAAMREYLIDDSFDF 125

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKMMV 176
            +IDT+  ++R +P  + ++L+ L +++ I+I+ +  +H A+ D+   + +++KM+ 
Sbjct: 126 LVIDTIKFSQRLYPDFKYHNLDYLIEKHHISINSKFKRHRAIYDAEATAKIFLKMIR 182


>gi|187925051|ref|YP_001896693.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN]
 gi|187716245|gb|ACD17469.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans
           PsJN]
          Length = 383

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG  +   RI E+G VE+         +   + P  +       +L GIT+ 
Sbjct: 15  IVFVDLETTGGSTAEHRITEVGVVEI--GPAGVSRWSSLVDPQ-QPIPSFIQQLTGITNA 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+F  I  E +   N     ++AHNA FD GF+  E +R+         ++ T+ 
Sbjct: 72  MVRGAPTFDVIAPELFKRLN--GKLFVAHNASFDRGFLRGEFRRVGLAFDPD--VLCTVR 127

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++R   P   R+ L++L +R+ +  S R  H AL D+ L+   + ++
Sbjct: 128 LSRALFPAEKRHGLDALVERHALVPSDR--HRALADADLIWQFWQRL 172


>gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
           43183]
 gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
           43183]
          Length = 328

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 77/193 (39%), Gaps = 9/193 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET+GL     R++ +  + L         F   L P      P  + +HG+T E L
Sbjct: 18  VVDVETSGLRPDRHRVLSLAVLTLRPDGHLVEEFSTLLDPGC---DPGPVHIHGLTPERL 74

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P+F  +     +  + +    +AHNA FD  F+  E  R     L   + + TL++ 
Sbjct: 75  RGAPTFDRVAERVAELLSGR--VMVAHNAAFDYAFLAHEFGRAGLH-LPVEQRLCTLALG 131

Query: 131 RRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           RR   P+    L++L   YG+       H AL D+ +L+ V    +   + +        
Sbjct: 132 RRIGLPTPDLRLSTLAAHYGVP--QHRAHDALDDARVLAGVLRASLADAAALGVPLPLER 189

Query: 190 DRFFKEEKKTVPN 202
             F    +     
Sbjct: 190 CSFHSVLRNGAAR 202


>gi|241759673|ref|ZP_04757773.1| DNA polymerase III subunit [Neisseria flavescens SK114]
 gi|241319681|gb|EER56077.1| DNA polymerase III subunit [Neisseria flavescens SK114]
          Length = 463

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 11/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTG +S  DRI E+  V       T   ++  + P  R       +L  I DE 
Sbjct: 22  VVVDLETTGGNSYQDRITEVALVRFEQGRTT--HYEQLVNP-CRSIPEFVARLTEIHDET 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+ P F+ I  +       Q A  +AHN++FD  F+  E  RI+ D   PS  + T+ +
Sbjct: 79  VKNAPVFADIAGDLLPLL--QGAVVVAHNSRFDYTFLRHEFARIHTDFAAPS--LCTVQL 134

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +RR +P   ++ L+S+ +R GI  ++R  H A+ D   L D Y+++
Sbjct: 135 SRRLYPEFYKHSLDSIIERTGIQTANR--HRAMTDVVALCD-YLEL 177


>gi|170017004|ref|YP_001727923.1| Rad3-related DNA helicase [Leuconostoc citreum KM20]
 gi|169803861|gb|ACA82479.1| Rad3-related DNA helicase [Leuconostoc citreum KM20]
          Length = 801

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 10/182 (5%)

Query: 2   IRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +  NK   +V D+ETTG   +K  RII+IG   + +    +  F+ F+ P  +       
Sbjct: 1   MNANK-TFVVVDLETTGQSVAKGGRIIQIGMTFIKNRRIID-HFESFVNP-AQPIDRNIQ 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L  I+ + +K+ P F  I     +     +   IAHN  FD  ++N E  R     L  
Sbjct: 58  QLTHISQKEVKNAPYFEEIAPVIQNLL--TDTVIIAHNVNFDYPYLNDEFARTGFPEL-T 114

Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +  IDT+ +A+   P++    L  L     IT+++   H A  D+H  + +++ +     
Sbjct: 115 NAAIDTVQLAQILLPTAPGYRLLDLTTYLNITLNN--AHRANADAHATALLFLSLWQRAE 172

Query: 180 QI 181
           Q+
Sbjct: 173 QL 174


>gi|28898888|ref|NP_798493.1| ribonuclease T [Vibrio parahaemolyticus RIMD 2210633]
 gi|260879442|ref|ZP_05891797.1| ribonuclease T [Vibrio parahaemolyticus AN-5034]
 gi|29611937|sp|P46232|RNT_VIBPA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|28807107|dbj|BAC60377.1| ribonuclease T [Vibrio parahaemolyticus RIMD 2210633]
 gi|308093530|gb|EFO43225.1| ribonuclease T [Vibrio parahaemolyticus AN-5034]
 gi|328474555|gb|EGF45360.1| ribonuclease T [Vibrio parahaemolyticus 10329]
          Length = 214

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L    +       T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVVDVETAGFNAQTDALLEICAVTLRMDEEGVLHPASTIHFHIEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                EAL+ +GI D F  L+   S      E +    ++        A  +AHNA FD+
Sbjct: 68  ANLEKEALEFNGIRDPFSPLRGAVSEQEALKEIYKLIRKEQKASDCSRAIMVAHNAAFDL 127

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+NA  +R      P  P    DT +++   +   +  L   CK  G+   +R  H AL
Sbjct: 128 SFVNAANERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 186 YDTQKTAELFCGIVNKWKALG 206


>gi|226325409|ref|ZP_03800927.1| hypothetical protein COPCOM_03214 [Coprococcus comes ATCC 27758]
 gi|225206152|gb|EEG88506.1| hypothetical protein COPCOM_03214 [Coprococcus comes ATCC 27758]
          Length = 231

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGLD   + IIEIGA+++ D  K    F  F+ P   + SP    L GIT+E
Sbjct: 5   YVCFDLETTGLDPLYNEIIEIGALKVRDG-KVAERFMEFIHPQ-EEISPMITNLTGITNE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +     ++ S+F +F   ++   I HN  FD  F+ +    +          IDT  
Sbjct: 63  MVANARPADAVISDFLEFC--EDDVLIGHNVGFDYSFMKSGASNLGLTFEKFG--IDTFK 118

Query: 129 IA-RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           IA R         L+SLC+ Y I   +++ H A  D+   + +Y  +
Sbjct: 119 IAQRTLKSLPSKSLSSLCEYYQIE--NKAAHRAYYDALATAKLYQTL 163


>gi|295133359|ref|YP_003584035.1| exonuclease domain-containing protein [Zunongwangia profunda
           SM-A87]
 gi|294981374|gb|ADF51839.1| exonuclease domain-containing protein [Zunongwangia profunda
           SM-A87]
          Length = 475

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 9/171 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +++  + DIETTG   K ++I EI  + + +    N  +   + P G +       L  I
Sbjct: 3   EVKFAIIDIETTGGGIKGNKITEICVLVVQNGEVINE-YTSLVNP-GTEIPLYIETLTNI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+ L D P FS I S+  +    ++  ++AHN  FD   I AE + +N       + + 
Sbjct: 61  NDKMLVDAPKFSEIASKIQEI--TRDCIFVAHNVNFDYNIIKAEFESLNLSF--QRKRLC 116

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A++  P      L +LC    I I H +KH A  D      ++ + +
Sbjct: 117 TVRLAKKLIPGLFSYSLGNLCT--SINIPHDNKHRAYGDCEATVTLFKRFI 165


>gi|107028837|ref|YP_625932.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116690004|ref|YP_835627.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|105898001|gb|ABF80959.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116648093|gb|ABK08734.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
          Length = 212

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 11/178 (6%)

Query: 1   MIRKNK--MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           M   N       V D ETTGL     DR  EI  + L +    +R FQ  +   GR+   
Sbjct: 1   MTPPNSTMQTVAVLDFETTGLSPNLGDRATEIAVILLRNGQVVDR-FQSLMN-AGRRIPS 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           + + L GIT++ +   P  S +  E   F  +     +AHNA FD  F  +EL  +    
Sbjct: 59  DVVALTGITNDMIATAPPASEVMKEAAAFVGKH--AVVAHNAGFDKRFWQSELGMLGMSA 116

Query: 118 LDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                   T+ +ARR +P +R + L+SL +   +  + R  H A++D+ +   ++ ++
Sbjct: 117 DHAFA--CTMLVARRIYPDARSHRLSSLAEMLRLPQTGR-AHRAMVDAEMAGHLWCRL 171


>gi|326335468|ref|ZP_08201655.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692234|gb|EGD34186.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 453

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI      D ++    F   + P  +K       L GI+++
Sbjct: 2   YAILDIETTGGKLNEESITEIAIYRF-DGNEVTDRFISLINPE-KKIDDFVAHLTGISNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P F  +     +         +AHNA FD   +  E +R+  D       I T+ 
Sbjct: 60  MVRNAPKFYEVAKRIIEI--TDGCIIVAHNAAFDYRILRLEFRRLGFDF--HRNTICTVE 115

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +++R  P  S   L  L +  GI +  R  H A  D+     ++  ++   +Q
Sbjct: 116 MSQRLLPQESSYSLGKLTRSLGIPLLGR--HRANGDAMATVHLFKLLLTKDTQ 166


>gi|315221792|ref|ZP_07863704.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           anginosus F0211]
 gi|315189025|gb|EFU22728.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           anginosus F0211]
          Length = 819

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 93/174 (53%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + + K +  V D+E T   S N +II++G V L++  +  +T++  + P+  K  P   +
Sbjct: 1   MTQEKRKYAVVDLEATSASS-NAKIIQVGIV-LIENGQIVKTYETDVNPH-EKLDPHIRQ 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L+  P FS +  E ++    ++A ++AHN KFD   +   L     + + P 
Sbjct: 58  LTGLTDKRLRKAPDFSQVAREIYELI--EDAIFVAHNVKFDANLLAEALFWEGFELVTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+   P+  + +L  LC++  I + H   H AL D+   + +++K+
Sbjct: 115 -RVDTVELAQVFFPTFEKYNLGILCEQLDIPLKH--AHTALADASATATLFLKI 165


>gi|323140812|ref|ZP_08075727.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414694|gb|EFY05498.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Phascolarctobacterium sp. YIT 12067]
          Length = 304

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 17/208 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTGL  +ND I EI A++  +  + +  F   + P          +L GI D 
Sbjct: 22  YTVLDIETTGLSPQNDYITEISAIKYRNNRRVDE-FSSLVKPE-LSIPYYITRLTGINDA 79

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   +   F DF  +       +N  FD+ FI   L       L  +  +D + 
Sbjct: 80  MVADAPAIDEVILSFMDFLADD--IIAGYNVAFDLSFIAENLAGHYAKRLA-NDYVDVMK 136

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+ + P   R    ++ + + I  +    H AL+D ++ +  Y K+             
Sbjct: 137 LAQNELPFLGRYKQTAVAEYFNIATAG--AHRALVDCNICNGCYQKLKELA--------- 185

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215
             D     ++K +  +   +R +PL  +
Sbjct: 186 VADYHLPPKQKELAIVPSFRRLRPLADK 213


>gi|330816132|ref|YP_004359837.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
 gi|327368525|gb|AEA59881.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
          Length = 203

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 10/195 (5%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
               V D ETTGL   + DR  EI  V L D    +R +Q  +   GR+   + + L GI
Sbjct: 2   QTVAVLDFETTGLSPAQGDRATEIAIVLLRDGEIVDR-YQSLMN-AGRRIPSDVVALTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T++ +   P  +S+  E   F    N   +AHNA FD  F  +EL  +            
Sbjct: 60  TNDMIASAPPVASVMREAAAFVG--NHPVVAHNAGFDRRFWQSELGLLGVPSAHEFA--C 115

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           TL +ARR +P    + L+SL +   +  + R  H A++D+ + S ++ ++    ++  +G
Sbjct: 116 TLLVARRIYPQAPSHRLSSLVEMLSLPKTGR-AHRAMVDAEMASHLWCRLQSDMAR-TYG 173

Query: 185 FKTNEDRFFKEEKKT 199
               +       +KT
Sbjct: 174 LSRIDHALMSRLQKT 188


>gi|251789330|ref|YP_003004051.1| ribonuclease T [Dickeya zeae Ech1591]
 gi|247537951|gb|ACT06572.1| ribonuclease T [Dickeya zeae Ech1591]
          Length = 226

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 88/216 (40%), Gaps = 22/216 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++EI AV L      + + + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDATLHFHIEPFEGAILRP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +   IF        EQ+      +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPTNPLRGAVSEYEALHEIFKSVRKGIKEQDCNRAIIVAHNATFDHSFLMAA 132

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P    DT +++       +  L   C    I       H AL D+   
Sbjct: 133 AERCGLKRNPFHPFATFDTAALSGLVL--GQTVLAKACIAADIPFDASQAHSALYDTERT 190

Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKEEKK 198
           + ++ +++     +GG  +  G  TN +    ++ +
Sbjct: 191 AQLFCELVNRWKRMGGWPLASGIDTNTEASLTDDDE 226


>gi|296133462|ref|YP_003640709.1| DnaQ family exonuclease/DinG family helicase [Thermincola sp. JR]
 gi|296032040|gb|ADG82808.1| DnaQ family exonuclease/DinG family helicase [Thermincola potens
           JR]
          Length = 994

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 11/174 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +K   +  DIETTGL+  +  IIE+ AV   +      TFQ  + P  +K   +  +L 
Sbjct: 1   MSKNTFVAVDIETTGLNPADSEIIEVAAVRFAEGR-VLETFQSLVKPE-KKIPLKIQQLT 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI +  + D P+ + +     +F    ++  I HN  FD+ F+              +R 
Sbjct: 59  GINESMVADAPACAEVTGMLAEFV--HDSIIIGHNIGFDLNFLQHY-----HPVFIRARY 111

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            DTL +AR   P +    L +L +   I + + S H A  D+    +V+   + 
Sbjct: 112 YDTLPLARLVWPKAHGYRLANLVEALKIQL-NGSPHRAFHDALAAKEVFCLALE 164


>gi|53728911|ref|ZP_00134639.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126207670|ref|YP_001052895.1| ribonuclease T [Actinobacillus pleuropneumoniae L20]
 gi|165975638|ref|YP_001651231.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|303250752|ref|ZP_07336948.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307251713|ref|ZP_07533617.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|166228560|sp|A3MYQ4|RNT_ACTP2 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|126096462|gb|ABN73290.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
 gi|165875739|gb|ABY68787.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|302650422|gb|EFL80582.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860799|gb|EFM92808.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 218

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 21/205 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET GL+++ D ++E+ A+ +      Y   ++     + P  G   
Sbjct: 12  KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANI 71

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
           +P++LK +GI  D  L+     +    E +            Q A  +AHNA FD  F+ 
Sbjct: 72  NPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQ 131

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A ++RIN  +DP  P  + DT ++A   +   +  L   C+   I    +  H AL D+ 
Sbjct: 132 AAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAKIPFDGKQAHSALYDTE 189

Query: 166 LLSDVYIKMMVGGSQINFGFKTNED 190
             ++++  M+     +  GF    D
Sbjct: 190 KTTELFCAMVNRLKDLG-GFPLVSD 213


>gi|227544617|ref|ZP_03974666.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri CF48-3A]
 gi|300910253|ref|ZP_07127713.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
 gi|227185400|gb|EEI65471.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri CF48-3A]
 gi|300892901|gb|EFK86261.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
          Length = 954

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 101/233 (43%), Gaps = 21/233 (9%)

Query: 1   MIRKNKMR----------KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLC 49
           M +++  R            V D+ETTG +    DRII+IG V + D  +    F+  + 
Sbjct: 1   MTQRSSQRTKKRDKKAPIYSVVDLETTGTNVNHGDRIIQIGCVLVQDG-EIMNHFETKIN 59

Query: 50  PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           P   K     ++L GI D+ ++  P F  I    +    E    ++AHN  FD  F+NAE
Sbjct: 60  P-REKIPRSIVQLTGIEDKDVRKAPLFEDIAGTIYSLLAE--TTFVAHNVNFDFPFLNAE 116

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168
           L+R     L     IDT+++++   P++++  L  L     I   H   H A+ D+   +
Sbjct: 117 LERAGYPSLSI-PAIDTVTLSQILLPTAKSFRLRDLTSSLHIE--HDHPHSAVSDAEATA 173

Query: 169 DVYIKMMVGGSQIN-FGFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKE 219
           D+   ++    ++     +          ++T     + L+R +     +++E
Sbjct: 174 DLLNDLLKRVQELPTLTLEKITQLKLNLPQQTAGVFDAELQRRRKSPQPLSEE 226


>gi|194334228|ref|YP_002016088.1| DNA-directed DNA polymerase [Prosthecochloris aestuarii DSM 271]
 gi|194312046|gb|ACF46441.1| DNA-directed DNA polymerase [Prosthecochloris aestuarii DSM 271]
          Length = 180

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R I  D+ETTGL  +  DR+IE+ AV +++       F   +  N         K+HGIT
Sbjct: 12  RVIAVDVETTGLSPRRGDRVIEVAAVAIVNG-VIEEHFCCLINVN-APIPTVVQKIHGIT 69

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E L  +    +++ EF  F        IAHNA FD+ FI  EL+ +    L+ S+   T
Sbjct: 70  PELLAGEKPPEAVWPEFLKFIGSN--ILIAHNAPFDISFIRNELRFLGLSLLNGSQ--CT 125

Query: 127 LSIARRKHPSSR-NDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKM 174
           L+ +R+K P  + + L ++ +   G        H A  D+ L + ++  +
Sbjct: 126 LAFSRKKFPQLKNHKLENVARHVLGGMPKGIKLHRASGDALLTAMIWQVI 175


>gi|257094042|ref|YP_003167683.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046566|gb|ACV35754.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 484

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 88/164 (53%), Gaps = 9/164 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ET+G +  +DR+IE+G VE+       R + V + P     SP   +L GI D  
Sbjct: 13  VFVDLETSGANFASDRVIEVGLVEVDADG--VREWSVLVNPE-APISPFITRLTGIDDAM 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P+F  +          +    +AHNA+FD GF+  E +R+  +   P+  + T+ +
Sbjct: 70  VGSAPTFRQLAPT--LLDRLRGRLLVAHNARFDYGFLQCEFKRLGVEFRTPT--LCTVKL 125

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +R+  P   R++L++L  R+G+ ++  ++H AL D+ +L +++ 
Sbjct: 126 SRKLFPEHHRHNLDALVTRHGLKVAG-NRHRALADARILWELWQ 168


>gi|190149453|ref|YP_001967978.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307260640|ref|ZP_07542332.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|307262772|ref|ZP_07544399.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|189914584|gb|ACE60836.1| DNA polymerase III, epsilon subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306869717|gb|EFN01502.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306871917|gb|EFN03634.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 218

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 21/205 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET GL+++ D ++E+ A+ +      Y   ++     + P  G   
Sbjct: 12  KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANI 71

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
           +P++LK +GI  D  L+     +    E +            Q A  +AHNA FD  F+ 
Sbjct: 72  NPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQ 131

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A ++RIN  +DP  P  + DT ++A   +   +  L   C+   I    +  H AL D+ 
Sbjct: 132 AAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAKIPFDDKQAHSALYDTE 189

Query: 166 LLSDVYIKMMVGGSQINFGFKTNED 190
             ++++  M+     +  GF    D
Sbjct: 190 KTTELFCAMVNRLKDLG-GFPLVSD 213


>gi|262274550|ref|ZP_06052361.1| ribonuclease T [Grimontia hollisae CIP 101886]
 gi|262221113|gb|EEY72427.1| ribonuclease T [Grimontia hollisae CIP 101886]
          Length = 223

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 18/190 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G + + D ++EI AV L      +   ++T    + P  G     EAL  +
Sbjct: 19  PVVIDVETAGFNPQTDALLEICAVTLKMDEDGWLSPDKTIHFHVTPFEGANLEQEALAFN 78

Query: 64  GITDEF--LKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQR-- 112
           GI D F  L+          E +            Q A  +AHNA FD  F+ A  +R  
Sbjct: 79  GIKDPFSPLRGAVDEEHALKEIFKLIRKEQKASGCQRAIMVAHNANFDHSFVMAASERAN 138

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + ++P  P    DT +++       +  L   CK  GI   +   H AL D+   ++++ 
Sbjct: 139 LKRNPFHPFATFDTAALSGLAL--GQTVLAKACKTAGIAFDNNEAHSALYDTERTAELFC 196

Query: 173 KMMVGGSQIN 182
           +++    ++ 
Sbjct: 197 EIVNRWKKLG 206


>gi|119476123|ref|ZP_01616475.1| exonuclease [marine gamma proteobacterium HTCC2143]
 gi|119450750|gb|EAW31984.1| exonuclease [marine gamma proteobacterium HTCC2143]
          Length = 216

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 9/169 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGL     DR IEIGAV L      +R FQ  + P G++ S       GIT+ 
Sbjct: 7   VVLDFETTGLSPDAGDRAIEIGAVRLESGEVVDR-FQALMNP-GQRVSGFIEDHTGITNT 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +    + +  +F DF    N   +AHNA FD  F++AEL RI++          +L 
Sbjct: 65  MLANSDHSAKVMHQFADFIEGHN--LVAHNASFDKRFLDAELARISRSY--SGDFSCSLL 120

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +RR +  + N  L +L K  GI  S    H AL DS +   +++ ++ 
Sbjct: 121 ASRRIYQQAPNHQLGTLIKYTGIA-STGDFHRALYDSEMTVKLWLHLLA 168


>gi|257464923|ref|ZP_05629294.1| ribonuclease T [Actinobacillus minor 202]
 gi|257450583|gb|EEV24626.1| ribonuclease T [Actinobacillus minor 202]
          Length = 216

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 20/199 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53
           + KN+ R    ++ D+ET GL+++ D ++EI A+ +      Y   ++     + P  G 
Sbjct: 10  LLKNRFRGYLPVIIDVETAGLNAQTDALLEIAAITVKMDENGYLVPDQKCHYHIQPFEGA 69

Query: 54  KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105
             + ++LK +GI  D  L+     +    E +            Q A  +AHNA FD GF
Sbjct: 70  NINQDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRKAMKDQGCQRAVIVAHNAAFDQGF 129

Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A  +RIN  +DP  P  + DT ++A   +   +  L   C+   I    +  H AL D
Sbjct: 130 LQAAAKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMANIAFDGKQAHSALYD 187

Query: 164 SHLLSDVYIKMMVGGSQIN 182
           +   ++++  M+     + 
Sbjct: 188 TEKTTELFCTMVNRLKDLG 206


>gi|271500216|ref|YP_003333241.1| ribonuclease T [Dickeya dadantii Ech586]
 gi|270343771|gb|ACZ76536.1| ribonuclease T [Dickeya dadantii Ech586]
          Length = 226

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 85/216 (39%), Gaps = 22/216 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++EI AV L      + + + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDDTLHFHIEPFEGAILRP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +   IF        +QN      +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPSNPLRGAVSEYDALHDIFKAVRKGIKDQNCNRAIIVAHNATFDHSFLMAA 132

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P    DT +++       +  L   C    I       H AL D+   
Sbjct: 133 AERCGLKRNPFHPFATFDTAALSGLVL--GQTVLAKACIAAEIPFDASQAHSALYDTERT 190

Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKEEKK 198
           + ++ +++     +GG  +       ED     ++ 
Sbjct: 191 AQLFCELVNRWKRMGGWPLAGAVGDTEDAPLAVDEG 226


>gi|213691637|ref|YP_002322223.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523098|gb|ACJ51845.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 211

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 84/213 (39%), Gaps = 17/213 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG    +  I EIGAV +      ++ FQ  + P  R    +   L GITD 
Sbjct: 10  YVALDLETTGFYPNSCAITEIGAVRVRKGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            + D      +   F  +     A       + HN  FD+ F++   + I          
Sbjct: 68  MVADLDPIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFA-CAD 126

Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            DT+ I+R   P+ R+  L  L  R+GI  +   +H AL D+      +  M       +
Sbjct: 127 YDTMQISRALFPAQRHHRLADLIVRFGI--ADNEEHRALSDAIQTQQCFEWM------RH 178

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
           +  + +E    + ++    N + +   + +  R
Sbjct: 179 YVTEHHESEAIRWKQAPARNSTEILHQQLVVKR 211


>gi|91216470|ref|ZP_01253436.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC
           700755]
 gi|91185264|gb|EAS71641.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC
           700755]
          Length = 454

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIE+TG     + I EI   +  D ++    F   + P  RK     + L GI +E
Sbjct: 2   YAILDIESTGGKYNEEGITEIAIYKF-DGNEIVDQFISLINPE-RKIQSFVVGLTGINNE 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  I     +    +    +AHNAKFD   +  E  R+    L   + + T+ 
Sbjct: 60  MLHQAPKFYEIAKRIIEI--TEGCTIVAHNAKFDYRMLKLEFDRLGY--LYERKTLCTVK 115

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++++  P      L  L K+ GI I+ R  H A  D+     ++  ++ 
Sbjct: 116 LSKKLLPDFESYSLGKLVKKLGIPITDR--HRASGDALATVKLFKLLLE 162


>gi|313818253|gb|EFS55967.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA2]
          Length = 597

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 27  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 83

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 84  GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 140

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 141 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 196

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 197 GNLGVTTLEDLL 208


>gi|302546442|ref|ZP_07298784.1| putative DNA polymerase III epsilon subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464060|gb|EFL27153.1| putative DNA polymerase III epsilon subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 335

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 10/201 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL +++DRI+     +L         +   + P      P  + +HG+T E
Sbjct: 26  YAVVDVETTGL-ARDDRIVSAAVYQLDARGAVQDRWYTLVNPQR---DPGPVWIHGLTRE 81

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P F  I + F +  + +    +AHNA FD   I  E  R   +     R + T++
Sbjct: 82  TLSDAPLFPDIATAFAERLDGR--VLVAHNAAFDWSMIAREFARSKTEAPVRQR-LCTIA 138

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +++    P + + L +L   YG+       H AL D+ +L++ +   +   ++       
Sbjct: 139 LSKELGLPLANHKLETLAAHYGVV--QERAHHALDDARVLAETFRPSLHRAAEAGVRLPL 196

Query: 188 NEDRFFKEEKKTVPNISLLKR 208
              +   E           +R
Sbjct: 197 LACQPLTEWSDPPSRGIGAQR 217


>gi|90409038|ref|ZP_01217165.1| ribonuclease T [Psychromonas sp. CNPT3]
 gi|90309845|gb|EAS38003.1| ribonuclease T [Psychromonas sp. CNPT3]
          Length = 204

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NGRKNSPEALKLH 63
            ++ DIET+GL+S+ D I+EI A+      +      +T    + P  G    P+AL+  
Sbjct: 14  PVIIDIETSGLNSQTDAILEIAAIFPAMDEQGYLYSAQTIHFNVQPFEGANMDPKALEFT 73

Query: 64  GITD-EFLKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQRIN- 114
           GI     L+       + +E +    +         +  +AHNA FD GFIN   +R N 
Sbjct: 74  GIDPFNPLRGAIDEKEVLTEIFKLVRKHQKINDCNRSILVAHNAAFDQGFINKASERCNF 133

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT S+A       +  L   C++  I  ++   H AL D+ + +D++  
Sbjct: 134 KRIPFHPFVCFDTASMAGLML--GQTVLAKACEQANIDYNNEEAHSALYDTQVTADLFFY 191

Query: 174 MMVGGSQIN 182
           M+     + 
Sbjct: 192 MVNKLKALG 200


>gi|256851162|ref|ZP_05556551.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN]
 gi|260660586|ref|ZP_05861501.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN]
 gi|282934628|ref|ZP_06339871.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 208-1]
 gi|297206027|ref|ZP_06923422.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16]
 gi|256616224|gb|EEU21412.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN]
 gi|260548308|gb|EEX24283.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN]
 gi|281301203|gb|EFA93504.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 208-1]
 gi|297149153|gb|EFH29451.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16]
          Length = 936

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 14/227 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     DRII+ G   + +     +T+   + P           L GI   
Sbjct: 10  FAVVDLETTGTRRGQDRIIQFGCAIIKNRQII-KTYSFLINPK-ADIPQAVQNLTGIKPA 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++P F +  ++  D    Q+  ++AHN  FD+ F+NAEL       L  +R IDT+ 
Sbjct: 68  DVVNQPVFKNFATQIEDIL--QDTVFVAHNINFDLPFLNAELAANGFPKL-RNRAIDTVE 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG--- 184
           +++   P+     L+ L   + + + H + H A  D++  + + +K++     +      
Sbjct: 125 LSKIAFPTLPSYRLSDLT--HSLNLKHTNPHQADSDAYATASLLLKILDKLESLPQSTLN 182

Query: 185 -FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
              +      ++ +     IS   R +     ++K+ L  H   ++ 
Sbjct: 183 TLTSLSKGLLRDTQFIFKEISEFTRQEKRP--LSKKYLQIHSLVLKK 227


>gi|294668271|ref|ZP_06733376.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309790|gb|EFE51033.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 493

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 11/173 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   ++ D+E TG +   DRI EI  +          +++  + P  R        L GI
Sbjct: 18  RRPVVIIDLEATGGNPYTDRITEIAFLRFDGNG--VSSYRQLVNPQ-RNIPEFVSNLTGI 74

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            DE + D P F+ +  +       +    +AHN+KFD  F+  E  R       P+  + 
Sbjct: 75  DDEMVADAPPFADLSDDLLHRL--RGTLLLAHNSKFDYTFLRHEFSRCRLSYAAPT--LC 130

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           T+ ++RR +P   +++L+S+ +R+ I +S R  H A+ D   L+D Y+++   
Sbjct: 131 TVQLSRRLYPQFFKHNLDSIIERHQIAVSSR--HRAMNDVLALAD-YLELTAA 180


>gi|314960311|gb|EFT04413.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA2]
          Length = 604

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 34  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 90

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 91  GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 147

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 148 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 203

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 204 GNLGVTTLEDLL 215


>gi|307253947|ref|ZP_07535799.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307256208|ref|ZP_07537995.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|307258402|ref|ZP_07540143.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306863151|gb|EFM95093.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306865389|gb|EFM97285.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306867586|gb|EFM99433.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 218

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 21/205 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET GL+++ D ++E+ A+ +      Y   ++     + P  G   
Sbjct: 12  KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANI 71

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
           +P++LK +GI  D  L+     +    E +            Q A  +AHNA FD  F+ 
Sbjct: 72  NPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQAFVQ 131

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A ++RIN  +DP  P  + DT ++A       +  L   C+   I    +  H AL D+ 
Sbjct: 132 AAVKRINAKRDPFHPFAMFDTATLAGFMF--GQTVLVKACQMAKIPFDGKQAHSALYDTE 189

Query: 166 LLSDVYIKMMVGGSQINFGFKTNED 190
             ++++  M+     +  GF    D
Sbjct: 190 KTTELFCAMVNRLKDLG-GFPLVSD 213


>gi|303252005|ref|ZP_07338176.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247168|ref|ZP_07529219.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302649435|gb|EFL79620.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306856306|gb|EFM88458.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 218

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 21/205 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET GL+++ D ++E+ A+ +      Y   ++     + P  G   
Sbjct: 12  KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANI 71

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
           +P++LK +GI  D  L+     +    E +            Q A  +AHNA FD  F+ 
Sbjct: 72  NPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQ 131

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A ++RIN  +DP  P  + DT ++A   +   +  L   C+   I    +  H AL D+ 
Sbjct: 132 AAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAKIPFDGKQAHSALYDTE 189

Query: 166 LLSDVYIKMMVGGSQINFGFKTNED 190
             ++++  M+     +  GF    D
Sbjct: 190 KTTELFCAMVNRLKDLG-GFPLVSD 213


>gi|149190366|ref|ZP_01868638.1| ribonuclease T [Vibrio shilonii AK1]
 gi|148835745|gb|EDL52710.1| ribonuclease T [Vibrio shilonii AK1]
          Length = 241

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NG 52
           +  K + R    +V D+ET G ++K D ++EI A+ L        +        + P  G
Sbjct: 32  LTLKKRFRGYFPVVVDVETAGFNAKTDALLEICAITLTMDDQGNLQPASVLHFHIEPFEG 91

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                EAL+  GI D F  L+   S      E +    ++        A  +AHNA FD 
Sbjct: 92  ANLEKEALEFTGIRDPFSPLRGAVSEQEALKEIYKVIRKEQKQHDCSRAIMVAHNANFDH 151

Query: 104 GFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F++A  +R  + + P  P    DT +++   +   +  L   CK  G+   +R  H AL
Sbjct: 152 SFVSAANERAKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMEFDNREAHSAL 209

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++ +++     + 
Sbjct: 210 YDTQKTAELFCRIVNKWKALG 230


>gi|315080369|gb|EFT52345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL078PA1]
          Length = 597

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 27  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 83

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 84  GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 140

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 141 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 196

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 197 GNLGVTTLEDLL 208


>gi|282856872|ref|ZP_06266130.1| DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens
           W5455]
 gi|282585290|gb|EFB90600.1| DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens
           W5455]
          Length = 196

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 8/190 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               DIETTGL      I+EI A+++     + R+FQ+ + P GR    +   +HGI D 
Sbjct: 10  FTALDIETTGLSPAFCGIVEIAALKIFPDG-SQRSFQMLVDP-GRPIPRDVSAIHGIDDA 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ +PS +   +    F     +  + HNA FD+ F+N  ++R       P+ + DTL 
Sbjct: 68  MVRGQPSAADAVAALVSFVGP--SPLVLHNAPFDMSFLNPVVRRQRLQWDSPA-VFDTLR 124

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R+  P      L SL + +         H AL D      ++ +++     ++  F  
Sbjct: 125 LSRQAFPGLNSYSLESLSRFF--DFDAGGHHRALADCRYCVQLFARILRKIRGLDMDFAA 182

Query: 188 NEDRFFKEEK 197
               +    +
Sbjct: 183 FAREYASSAR 192


>gi|205373870|ref|ZP_03226672.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus coahuilensis m4-4]
          Length = 194

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 9/158 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D+ETTG   K  DRII++ A  L+++ +    F  FL PN +       +L GIT
Sbjct: 5   RYVVVDLETTGNSPKRGDRIIQLSAC-LIEHGEIVEQFTSFLNPN-KTIPIFIEELTGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              + D P+F  I  +     N  ++ ++AHN  FD+ F+  EL            I+DT
Sbjct: 63  QPMVDDAPNFEQIAPKLISMLN--DSVFVAHNVTFDLSFLQWELHAAGYKTF-QGPILDT 119

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLD 163
           + +A+   P+S    L  L +++ +   H   H A  D
Sbjct: 120 VELAKICFPTSNSYKLGDLSEKFNLL--HERPHQADSD 155


>gi|182683721|ref|YP_001835468.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14]
 gi|182629055|gb|ACB90003.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14]
          Length = 816

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176


>gi|296160037|ref|ZP_06842857.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
 gi|295889783|gb|EFG69581.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
          Length = 383

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG  +   RI E+G VE+         +   + P  +       +L GIT+ 
Sbjct: 15  IVFVDLETTGGSTAEHRITEVGVVEV--GPAGVSRWSSLVDPQ-QPIPSFIQQLTGITNA 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+F +I    ++  N     ++AHNA FD GF+  E +R+         ++ T+ 
Sbjct: 72  MVRGAPTFEAIAPALFERLN--GKLFVAHNASFDRGFLRGEFRRVGLAFDPD--VLCTVR 127

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++R   P   R+ L++L +R+ +  S R  H AL D+ L+   + ++
Sbjct: 128 LSRALFPAEKRHGLDALVERHTLVPSDR--HRALADADLIWQFWQRL 172


>gi|307244994|ref|ZP_07527091.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306854159|gb|EFM86367.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
          Length = 218

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 21/205 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET GL+++ D ++E+ A+ +      Y   ++     + P  G   
Sbjct: 12  KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANI 71

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
           +P++LK +GI  D  L+     +    E +            Q A  +AHNA FD  F+ 
Sbjct: 72  NPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQAFVQ 131

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A ++RIN  +DP  P  + DT ++A       +  L   C+   I    +  H AL D+ 
Sbjct: 132 AAVKRINAKRDPFHPFAMFDTATLAGFMF--GQTVLVKACQMAKIPFDGKQAHSALYDTE 189

Query: 166 LLSDVYIKMMVGGSQINFGFKTNED 190
             ++++  M+     +  GF    D
Sbjct: 190 KTTELFCAMVNRLKGLG-GFPLVSD 213


>gi|15902755|ref|NP_358305.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae R6]
 gi|116516668|ref|YP_816199.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae D39]
 gi|15458302|gb|AAK99515.1| ATP-dependent DNA helicase [Streptococcus pneumoniae R6]
 gi|116077244|gb|ABJ54964.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae D39]
          Length = 816

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMAQLPKGL 176


>gi|91784877|ref|YP_560083.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
 gi|91688831|gb|ABE32031.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
          Length = 395

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTG  +   RI E+G VE+         +   + P  +       +L GIT+ 
Sbjct: 27  IVFVDLETTGGSTAEHRITEVGVVEV--GPAGVSRWSSLVDPQ-QPIPSFIQQLTGITNA 83

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+F +I    ++  N     ++AHNA FD GF+  E +R          ++ T+ 
Sbjct: 84  MVRGAPTFEAIAPALFERLN--GKLFVAHNASFDRGFLRGEFRRAGLAFDPD--VLCTVR 139

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++R   P   R+ L++L +R+ +  S R  H AL D+ L+   + ++
Sbjct: 140 LSRALFPAEKRHGLDALVERHTLVPSDR--HRALADADLIWQFWQRL 184


>gi|225376763|ref|ZP_03753984.1| hypothetical protein ROSEINA2194_02405 [Roseburia inulinivorans DSM
           16841]
 gi|225211389|gb|EEG93743.1| hypothetical protein ROSEINA2194_02405 [Roseburia inulinivorans DSM
           16841]
          Length = 241

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 87/203 (42%), Gaps = 12/203 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+E TGL++K DRI+E GA  +     T  TF   + P  RK   + + L GIT+E
Sbjct: 5   YVVIDLEMTGLNAKTDRILEAGAARVRGNVVTA-TFSEIINPK-RKLPEKVVSLTGITNE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                    +  + F+DF  E     +  N  FD  F+        +     +  +DTL 
Sbjct: 63  MAAQGKETDATLAAFFDFIGED--ILVGQNVIFDYSFLKQWAVNHKRTFERNA--VDTLK 118

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY---IKMMVGGSQINFG 184
           +AR+  P   + DL SLC  +GI   H   H AL D      ++    KM   G+   F 
Sbjct: 119 LARKFLPQEQKKDLASLCSYFGIERVH--AHRALDDVMETQQIFEQMQKMYEAGATGAFR 176

Query: 185 FKTNEDRFFKEEKKTVPNISLLK 207
               + +  K+   T   I  LK
Sbjct: 177 PYPLQYKVKKQSPATPQQIKYLK 199


>gi|83312383|ref|YP_422647.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
 gi|82947224|dbj|BAE52088.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
          Length = 215

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 30/218 (13%)

Query: 1   MIRKNKM----RKIVFDIETTGLD-SKNDRI-------------IEIGA---VELLDYSK 39
           M+  + +    R +  D ETTG        I             IEIG    V   +  K
Sbjct: 1   MLSLDDLATTSRIVAIDAETTGFKVPTPAEIKKMPKGLRLPGVVIEIGCLELVRGDEGWK 60

Query: 40  TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
           T  ++Q  L P G   S  ++ +HGI+   LK  PSF  +  +F  F  +     +AH+A
Sbjct: 61  TGESWQRRLQPGG-PISKASIDVHGISPAELKTAPSFRDVLDDFEAFIGQD--ALLAHSA 117

Query: 100 KFDVGFINAELQRINKDPLDP-----SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154
           + ++ F+N E  R  +   D         + T  ++R+  P     L+ LC R  +  S 
Sbjct: 118 ENEMEFLNFEYARAGRCGFDEMIFGDGDFVCTQELSRQFFPGVPGSLDVLCDRLWVDRSD 177

Query: 155 R-SKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191
           R   HGALLD+ L ++ ++KM  G  Q +  + +  D+
Sbjct: 178 RFEHHGALLDAILTAEAFMKMAGGFVQDDTRYMSFGDQ 215


>gi|325955054|ref|YP_004238714.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
 gi|323437672|gb|ADX68136.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
          Length = 453

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 65/167 (38%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIE TG     + II+I      D   T   F   + P  RK  P   KL  ITD+
Sbjct: 2   FAILDIEATGGKVGEESIIDIAIFRY-DGQTTVDQFISLVNP-MRKIDPFVQKLTNITDK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F  I     +    ++   + HN KFD   +  E +++  D       IDT  
Sbjct: 60  MVLTAPKFHEIAKRIVEI--TEDCILVGHNVKFDYRMLRQEFKKLGYDYEKD--WIDTFE 115

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            A++  P      L  L    GI I+ R  H A  D+     ++  +
Sbjct: 116 FAQKLIPNMESYSLGKLTNALGIPITDR--HRASGDARATLKLFQLL 160


>gi|76788222|ref|YP_329936.1| DNA polymerase III epsilon subunit family exonuclease
           [Streptococcus agalactiae A909]
 gi|77412263|ref|ZP_00788580.1| Unknown [Streptococcus agalactiae CJB111]
 gi|77414710|ref|ZP_00790841.1| Unknown [Streptococcus agalactiae 515]
 gi|76563279|gb|ABA45863.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Streptococcus agalactiae A909]
 gi|77159237|gb|EAO70417.1| Unknown [Streptococcus agalactiae 515]
 gi|77161697|gb|EAO72691.1| Unknown [Streptococcus agalactiae CJB111]
          Length = 604

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 94/173 (54%), Gaps = 10/173 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K R I FDIETTGL+S+ DRI+E+GAV   +  K   +++  +       S +  +++ I
Sbjct: 50  KNRFIAFDIETTGLNSQQDRIVEVGAVLFENG-KVVDSYESLVN-AKVNISADVTRINNI 107

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           T+  +K+ PS + ++ E  +F  +         AHNAKFD+GF+   L R+  +     +
Sbjct: 108 TNRMIKNAPSENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLGYN--GEIK 165

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +DTLS++R+     RN   N++ + + +   +++ H A  D+ +  ++  K+
Sbjct: 166 YLDTLSLSRKNVKGLRNYKQNTVAEYFNLQ--NKNSHRAKSDAIICGNILTKL 216


>gi|327452827|gb|EGE99481.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL092PA1]
          Length = 587

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 17  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 73

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 74  GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 130

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 131 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 186

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 187 GNLGVTTLEDLL 198


>gi|313809712|gb|EFS47433.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA1]
 gi|314915265|gb|EFS79096.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA4]
 gi|314978176|gb|EFT22270.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA2]
 gi|314983574|gb|EFT27666.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA1]
 gi|315098227|gb|EFT70203.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA2]
 gi|327330574|gb|EGE72320.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL097PA1]
 gi|327442625|gb|EGE89279.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA2]
 gi|327445348|gb|EGE92002.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA2]
          Length = 597

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 27  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 83

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 84  GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 140

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 141 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 196

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 197 GNLGVTTLEDLL 208


>gi|321309652|ref|YP_004191981.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801496|emb|CBY92142.1| DNA polymerase III, alpha subunit, Gram-positive type (fragment)
           [Mycoplasma haemofelis str. Langford 1]
          Length = 216

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 13/199 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH-GITD 67
             V DIETTG   K   I EI   +  +  + ++ +  F+    R   P        ITD
Sbjct: 20  YCVLDIETTGTSYKTSEITEISIHKYRNGKRVDK-YHSFVK-ISRPLPPFIRIFTPHITD 77

Query: 68  EFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIID 125
           E L ++      +  E  DF   + +  +AHN   FD+ F+ A   +    PL  + IID
Sbjct: 78  ELLAREGKDLDVVIKEVKDF--TKGSILVAHNGVTFDLLFLKAACIKYGLKPLS-NPIID 134

Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF- 183
           TL ++R   P+ R + L  +C+R  +       H A  D  +L  V+    VG  +I   
Sbjct: 135 TLRLSRSTFPNERYHTLGDVCRRMQVNYDEDRAHSADYDVDVLWQVFWNFAVGLKKIGVN 194

Query: 184 ---GFKTNEDRFFKEEKKT 199
              G +   +  F   KKT
Sbjct: 195 LEDGLQEANEAIFNMFKKT 213


>gi|322515227|ref|ZP_08068225.1| ribonuclease T [Actinobacillus ureae ATCC 25976]
 gi|322118732|gb|EFX90938.1| ribonuclease T [Actinobacillus ureae ATCC 25976]
          Length = 218

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 21/207 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53
           + KN+ R    ++ D+ET GL+++ D ++E+ A+ +      Y   ++     + P  G 
Sbjct: 10  LLKNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGA 69

Query: 54  KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105
             +P++LK +GI  D  L+     +    E +            Q A  +AHNA FD  F
Sbjct: 70  NINPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKDQGCQRAVIVAHNATFDQAF 129

Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A ++RIN  +DP  P  + DT ++A   +   +  L   C+   I+   +  H AL D
Sbjct: 130 VQAAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAKISFDGKQAHSALYD 187

Query: 164 SHLLSDVYIKMMVGGSQINFGFKTNED 190
           +   ++++  M+     +  GF    D
Sbjct: 188 TEKTTELFCAMVNRLKDLG-GFPLVSD 213


>gi|315085964|gb|EFT57940.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA3]
          Length = 584

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 14  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 70

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 71  GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 127

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 128 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 183

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 184 GNLGVTTLEDLL 195


>gi|497127|gb|AAA21572.1| RNase T [Vibrio parahaemolyticus]
          Length = 214

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L    +       T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVVDVETAGFNAQTDALLEICAVTLRMDEEGVLHPASTIHFHIEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                EAL+ +GI D F  L+   S      E +    ++        A  +AHNA FD+
Sbjct: 68  ANLEKEALEFNGIRDPFSPLRGAISEQEALKEIYKLIRKEQKASDCSRAIMVAHNAAFDL 127

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+NA  +R      P  P    DT +++   +   +  L   CK  G+   +R  H AL
Sbjct: 128 SFVNAANERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 186 YDTQKTAELFCGIVNKWKALG 206


>gi|289550764|ref|YP_003471668.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180296|gb|ADC87541.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis
           HKU09-01]
          Length = 893

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 8/166 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG +  +   K   T+   +     +  P    L  I ++
Sbjct: 6   YAVVDLETTGNQLDYDEIIQIG-ITFVRGQKIVGTYHSMIN-TDVEIPPFIQALTSIEED 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK  P F  +  + +     +++ ++AHN  FD+ FI    +R N     P ++IDT+ 
Sbjct: 64  MLKQAPYFHEVAEDVYKQL--KDSVFVAHNVSFDLTFIKKAFKR-NHIHFQPKKVIDTVE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + +   P      L+ L + + I + +   H A  D+   + + IK
Sbjct: 121 LFKIAFPTDKSYQLSELAEAHHIPLDN--AHRADEDATTTAKLMIK 164


>gi|309790215|ref|ZP_07684787.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
 gi|308227800|gb|EFO81456.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
          Length = 935

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 83/208 (39%), Gaps = 15/208 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGL +  D IIE  AV+  D     R F   + P  +    +  +L GIT +
Sbjct: 6   FVALDVETTGLQAGIDEIIEFAAVKFRDGEILER-FSQLIAP-RQPLPLKITRLTGITAQ 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P F+ +  +   F        + H+  FD+G + A+             + DT  
Sbjct: 64  DLADAPHFNDVGGKIAGFIKS--YPLVGHSINFDLGMLRAQGMNF------TQPVYDTFD 115

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A    P  +   L ++  R GI   H   H AL D+ + + V+  ++  G   + G + 
Sbjct: 116 LATILMPQIAVYKLGAIADRLGIP--HPDDHRALNDAEVTAHVFTHLL--GVIESLGLED 171

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            ++     E+   P   L         R
Sbjct: 172 LKEIVRLSEQVMFPMRDLFAHALEKRAR 199


>gi|325068629|ref|ZP_08127302.1| hypothetical protein AoriK_12441 [Actinomyces oris K20]
          Length = 204

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 10/187 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
               ++  +V D+ETTG       + EIGAV++    +    F   + P G     +   
Sbjct: 15  TPLERVTFVVVDLETTGGAPGARSLTEIGAVKVR-GGQVLAEFSTLVNP-GVAIPAQITL 72

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           L GIT+  +   P   +    F D+      +   +AHNA+FDVG +      ++ +  +
Sbjct: 73  LTGITNAMVAGAPGVRTCVEAFLDWADLLADDVVLVAHNARFDVGHLRGAAAALDLEWPE 132

Query: 120 PSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P R++DTL++AR+         + L +L    G  I  R  H AL D+    DV    + 
Sbjct: 133 P-RVLDTLALARKAWTRSEVPNHKLGTLAAFVGSQI--RPTHRALDDARATVDVLHAALE 189

Query: 177 GGSQINF 183
             + +  
Sbjct: 190 VMAPLGV 196


>gi|256847331|ref|ZP_05552777.1| helicase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715995|gb|EEU30970.1| helicase [Lactobacillus coleohominis 101-4-CHN]
          Length = 950

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 12/186 (6%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           M  K + R     V D+ETTG   K  DRII++G V + D    N+ F+  + P   K  
Sbjct: 5   MKTKQRKRGPIYSVVDLETTGTSVKSGDRIIQVGLVMIQDGKIINQ-FETRINP-LMKIP 62

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
               +L GITD+ +   P    I        +     ++AHN  FD  FIN EL R+ +D
Sbjct: 63  RSVQQLTGITDKDVSKAPLLEDIAPTLESLLS--GTIFVAHNVNFDFPFINHELTRVGRD 120

Query: 117 PLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           PL  S  IDT+++++   P+++   L  L     I   H   H A+ D+     +   ++
Sbjct: 121 PLRISA-IDTVTLSQILMPTAKSYRLRDLTSYLHIE--HDHPHSAVSDAEATGVLLKDLL 177

Query: 176 VGGSQI 181
                +
Sbjct: 178 AKLRAL 183


>gi|240947949|ref|ZP_04752376.1| ribonuclease T [Actinobacillus minor NM305]
 gi|240297743|gb|EER48202.1| ribonuclease T [Actinobacillus minor NM305]
          Length = 216

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 20/199 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53
           + KN+ R    ++ D+ET GL+++ D ++EI A+ +      Y   ++     + P  G 
Sbjct: 10  LLKNRFRGYLPVIIDVETAGLNAQTDALLEIAAITVKMDENGYLVPDQKCHYHIQPFEGA 69

Query: 54  KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105
             + ++LK +GI  D  L+     +    E +            Q A  +AHNA FD GF
Sbjct: 70  NINQDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRKAMKEQGCQRAVIVAHNAAFDQGF 129

Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A  +RIN  +DP  P  + DT ++A   +   +  L   C+   I    +  H AL D
Sbjct: 130 LQAAAKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQIANIAFDGKQAHSALYD 187

Query: 164 SHLLSDVYIKMMVGGSQIN 182
           +   ++++  M+     + 
Sbjct: 188 TEKTTELFCTMVNRLKDLG 206


>gi|170697844|ref|ZP_02888929.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170137231|gb|EDT05474.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 205

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            V D ETTGL     DR  EI  + L D    +R +Q  +   GR+   + + L GIT+E
Sbjct: 5   AVLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLMN-AGRRIPSDVVALTGITNE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  S +  E   F    N   +AHNA FD  F  AEL  +            T+ 
Sbjct: 63  MIASAPPVSQVMKEAAAFVG--NHPLVAHNAGFDKRFWQAELGMLGMAAEHAFA--CTML 118

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +ARR +P +R + L+SL     +  + R  H A++D+ + S ++ ++
Sbjct: 119 VARRIYPHARSHRLSSLADMLRLPQTGR-AHRAMVDAEIASHLWCRL 164


>gi|330446493|ref|ZP_08310145.1| ribonuclease T [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490684|dbj|GAA04642.1| ribonuclease T [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 218

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 21/200 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGR 53
             K++ R    +V D+ET G ++K D ++EI AV    +   + K   T    + P  G 
Sbjct: 9   TLKSRFRGYFPVVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVAPFEGA 68

Query: 54  KNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVG 104
             + EAL+ +GI D F  L+   S      E +    ++        A  +AHNA FD  
Sbjct: 69  ILNKEALEFNGIRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHS 128

Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+ A  +R  + ++P  P    DT +++       +  L   C+   I   +R  H AL 
Sbjct: 129 FVMAASERAKLKRNPFHPFATFDTAALSGLAF--GQTVLAKACQTANIPFDNREAHSALY 186

Query: 163 DSHLLSDVYIKMMVGGSQIN 182
           D+   ++++ +++    ++ 
Sbjct: 187 DTERTAELFCEIVNKWKKLG 206


>gi|119472859|ref|ZP_01614766.1| ribonuclease T [Alteromonadales bacterium TW-7]
 gi|119444691|gb|EAW25998.1| ribonuclease T [Alteromonadales bacterium TW-7]
          Length = 227

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 22/211 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G + + D ++EI    +++ D      ++T    + P  G      A++ +
Sbjct: 18  PVVIDVETAGFNKETDALLEIAVSVLKMDDDGLLSIDQTVHFHVEPFEGANIEQAAIEFN 77

Query: 64  GITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI     L+   +      E              Q +  +AHNA FD GF+NA ++R  I
Sbjct: 78  GIDPFSPLRGAVAEEEAIKEICKVVRKAQKAAGCQRSVIVAHNAAFDHGFLNAAIERNNI 137

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT ++A       +  L   C+  GI   +   H AL D+   +++Y  
Sbjct: 138 KRTPFHPFVSFDTTTLAGLAL--GQTVLAKACRAAGIEFDNSQAHSALYDTERTAELYCL 195

Query: 174 MM-----VGGSQINFGFKTNEDRFFKEEKKT 199
           ++     +GG  +    ++ +D   KE K T
Sbjct: 196 IVNRWQELGGWPLAPLDESGDDEAAKEPKTT 226


>gi|37679366|ref|NP_933975.1| ribonuclease T [Vibrio vulnificus YJ016]
 gi|54036328|sp|Q7MM91|RNT_VIBVY RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|37198109|dbj|BAC93946.1| ribonuclease T [Vibrio vulnificus YJ016]
          Length = 217

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 22/213 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L      +     T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                EAL+ +GI D F  L+   +      E +     +        A  +AHNA FD+
Sbjct: 68  ANLEKEALEFNGIRDPFSPLRGAVTEQEALKEIYKLIRREQKAADCSRAIMVAHNAAFDL 127

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+NA  +R      P  P    DT +++   +   +  L   CK  G+   +R  H AL
Sbjct: 128 SFVNAANERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFK 194
            D+   ++++  ++     +  G+   ED   K
Sbjct: 186 YDTEKTAELFCGIVNKWKALG-GWPLIEDENEK 217


>gi|313791823|gb|EFS39934.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA1]
          Length = 597

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 27  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 83

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 84  GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 140

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 141 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 196

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 197 GNLGVTTLEDLL 208


>gi|313637226|gb|EFS02740.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           seeligeri FSL S4-171]
          Length = 921

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 9/160 (5%)

Query: 12  FDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+ETTG  + + DRII+  A   ++  K   T+  FL P  +       +L GI+ + +
Sbjct: 2   VDLETTGNQASREDRIIQFAAC-FVESGKRLETYATFLNPE-KPIPAFIQELTGISPKDV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           KD P F  +          ++  ++AHN  FD  F+  E+ R     L   + +DT+ +A
Sbjct: 60  KDAPLFEDVAPIIAGLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLDTVELA 116

Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           R  +P      L  L   +G  + H   H A  D+ + +D
Sbjct: 117 RIMYPGIDSYKLQDLSDEFG--LGHDKPHQADSDAEVTAD 154


>gi|304403858|ref|ZP_07385520.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus
           YK9]
 gi|304346836|gb|EFM12668.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus
           YK9]
          Length = 244

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 10/186 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59
           I   ++  IVFD+ETTG      D II  GAV +       + +F   + P  R+     
Sbjct: 53  IPLRELEIIVFDLETTGFYPYNGDEIISFGAVLVKGDEIFEDVSFYSLVNPK-RRIPMHI 111

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L GIT+E ++  P    +  +F +F   +    +AH +  D  F+NA L R +K  L 
Sbjct: 112 TQLTGITNEMVEGAPDLMQVLHDFMEFVGRR--ILLAHGSGHDKQFLNAALWRTSKVNL- 168

Query: 120 PSRIIDTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             R++DT+ +A+   P       L+ L +   I I+ R  H AL DS + + +++  +  
Sbjct: 169 THRLLDTMMVAKWLEPKRPDGYGLDELLESANIPIADR--HHALKDSIMTAKLWMAYLKK 226

Query: 178 GSQINF 183
             + N 
Sbjct: 227 IQERNI 232


>gi|120599313|ref|YP_963887.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1]
 gi|120559406|gb|ABM25333.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1]
          Length = 298

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 7/165 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D ETTGL+++ D+IIEI A++    S  +  F+  + P   K   +   + GIT+
Sbjct: 18  KFIALDAETTGLEAETDKIIEIAAIKFDLLSNDHPVFESLINP-AVKVPRKITNITGITN 76

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L D+P F+ +  +   F    +   +A+NAKFD GF++AE   +    +  ++    L
Sbjct: 77  KMLVDQPPFAELAQDLKAFIG--DLPIVAYNAKFDKGFLDAEFANVGI--VLNNQYHCAL 132

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           ++A+         L ++ K   I +     H A  D+     V++
Sbjct: 133 NLAKAAFSLPNYKLATVAKHCNIPLD--EAHRAKADAIAAGRVFM 175


>gi|313823175|gb|EFS60889.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA2]
 gi|313833843|gb|EFS71557.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL056PA1]
 gi|314919771|gb|EFS83602.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA3]
          Length = 604

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 34  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 90

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 91  GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 147

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 148 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 203

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 204 GNLGVTTLEDLL 215


>gi|314990240|gb|EFT34331.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA3]
          Length = 604

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 34  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 90

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 91  GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 147

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 148 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 203

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 204 GNLGVTTLEDLL 215


>gi|291524324|emb|CBK89911.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium rectale DSM 17629]
          Length = 260

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 10/178 (5%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   + ++   V D+E TGL +KND+IIEIGA  +    +   T    + P         
Sbjct: 16  MSNIDNIKNYTVIDLEMTGLSAKNDKIIEIGAARVR-GGEIVDTISTLVNPKQH-IPQRV 73

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L GITD  +++            +F  +     +  N  FD  F+        +    
Sbjct: 74  QELTGITDSDVENAADMDVAVDNLLNFIGDD--IILGQNVTFDYSFLKQWAVNHKRTLSL 131

Query: 120 PSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +   DTL IAR+  P+ ++  L  LC+ +G++  +   H AL D+     ++ K++V
Sbjct: 132 NA--YDTLKIARKCLPAEQSKKLEDLCEYFGVSREN--AHRALDDAIETKQIFEKLLV 185


>gi|118474671|ref|YP_892037.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118413897|gb|ABK82317.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 265

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 95/184 (51%), Gaps = 13/184 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIET+G    + +IIEIGA++LLD  +  R F+ F+            +L GI   
Sbjct: 73  FCVVDIETSGG-INSGQIIEIGALKLLDGVEIGR-FESFV--YAPNVPENISELTGIYAA 128

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   PS +++  +F  F    ++ ++AHN KFD  FI+  L+R+    L  +R I T+ 
Sbjct: 129 DLAKAPSLANVLEKFKLFLG--DSVFVAHNVKFDYDFISISLERLGFGMLL-NRRICTID 185

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +ARR   S +  L +L +  GI+ +H   H AL D+   ++++ + +    ++ +  ++ 
Sbjct: 186 LARRTIISQKYGLGTLKELLGISNAH---HRALNDAIAAAEIFKECV---KRVPWSIQSV 239

Query: 189 EDRF 192
           ED  
Sbjct: 240 EDLI 243


>gi|85713236|ref|ZP_01044262.1| RNase T, degrades tRNA [Idiomarina baltica OS145]
 gi|85692931|gb|EAQ30903.1| RNase T, degrades tRNA [Idiomarina baltica OS145]
          Length = 222

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 78/199 (39%), Gaps = 20/199 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGR 53
           + K + R    +V D+ET G ++  D ++EI AV    +     K   + Q  + P  G 
Sbjct: 20  LMKQRFRGYLPVVIDVETAGFNASTDALLEIAAVILNFDEHGQLKPVESHQFHVEPFEGA 79

Query: 54  KNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105
                A++ +GI     L+       +    +            Q +  + HN+ FD  F
Sbjct: 80  NIEQAAIEFNGIDPHSELRGALPEDEVLKALFKPIRKAQKAAGCQRSVLVGHNSNFDHSF 139

Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +    +R N  ++P  P    DT S+A       +  L   CK  GI    +  H AL D
Sbjct: 140 LMRAAERANIKRNPFHPFVSFDTTSLAALTL--GQTVLIKACKAAGIEFDQKQAHSALYD 197

Query: 164 SHLLSDVYIKMMVGGSQIN 182
           +   ++++  M+     + 
Sbjct: 198 TEKTAELFCWMVNKWKALG 216


>gi|150020376|ref|YP_001305730.1| DNA polymerase III, epsilon subunit [Thermosipho melanesiensis
           BI429]
 gi|149792897|gb|ABR30345.1| DNA polymerase III, epsilon subunit [Thermosipho melanesiensis
           BI429]
          Length = 184

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 11/193 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPE 58
           MI +N     V D ETTGL+    DRIIE+  V +          +   + P+  K S  
Sbjct: 1   MIDENV--YCVLDTETTGLNPYFGDRIIEVAIVPIYKGKIIESWIYHSLVNPHI-KISAL 57

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           + K+HGI++  ++  P    I      +   ++  ++ HNA+ D+ F++   + + + P+
Sbjct: 58  SEKIHGISNSEIESAPGLEKILDNIRAY--AKDTIFVMHNARMDLSFLDIATKEVGQFPI 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +  R IDTL I+   +   +  L SL + +      +  H AL D+ L + V++K+    
Sbjct: 116 NV-RYIDTLEISLILY-GKKRSLESLVREFK--FGEKVPHRALGDAILTAKVFLKLSEKI 171

Query: 179 SQINFGFKTNEDR 191
           + +N   +   DR
Sbjct: 172 ANLNEFVRIWGDR 184


>gi|300173471|ref|YP_003772637.1| ATP-dependent helicase DinG [Leuconostoc gasicomitatum LMG 18811]
 gi|299887850|emb|CBL91818.1| ATP-dependent helicase DinG [Leuconostoc gasicomitatum LMG 18811]
          Length = 801

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 9/175 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+ETTG    K  RII+IG +  +   +    F+ F+ P G+       +L  I  
Sbjct: 7   FVVVDLETTGQSVTKGGRIIQIG-MTFIKQRQIVDHFESFVNP-GQLIDRNIQQLTHIAQ 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +K+ P F  +     +  N  N   IAHN  FD  ++N E +R     L  S  IDT+
Sbjct: 65  KDVKNAPYFEELAPMLQNLLN--NTIIIAHNVNFDYPYLNDEFRRTGFPEL-TSSAIDTV 121

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +A+   P++    L  L     IT+++   H A  D+H  + +++K+     Q+
Sbjct: 122 QLAQILLPTAPGYRLVDLTTYLDITLNN--AHRANADAHATARLFLKLWQRAEQL 174


>gi|314987763|gb|EFT31854.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA2]
          Length = 587

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 17  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 73

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 74  GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 130

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 131 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 186

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 187 GNLGVTTLEDLL 198


>gi|313764773|gb|EFS36137.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA1]
 gi|313807207|gb|EFS45694.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA2]
 gi|313813245|gb|EFS50959.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA1]
 gi|313820015|gb|EFS57729.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA1]
 gi|313825546|gb|EFS63260.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA1]
 gi|313830622|gb|EFS68336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL007PA1]
 gi|315096369|gb|EFT68345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL038PA1]
 gi|315101083|gb|EFT73059.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA1]
 gi|327325880|gb|EGE67670.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL096PA2]
 gi|328753125|gb|EGF66741.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA1]
 gi|328759130|gb|EGF72746.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA2]
 gi|332675138|gb|AEE71954.1| hypothetical protein PAZ_c07700 [Propionibacterium acnes 266]
          Length = 587

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 17  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 73

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 74  GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 130

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 131 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 186

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 187 GNLGVTTLEDLL 198


>gi|225861294|ref|YP_002742803.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230625|ref|ZP_06964306.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255368|ref|ZP_06978954.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503192|ref|YP_003725132.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|225726410|gb|ACO22261.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238787|gb|ADI69918.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           pneumoniae TCH8431/19A]
          Length = 816

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176


>gi|313815838|gb|EFS53552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA1]
 gi|314931784|gb|EFS95615.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL067PA1]
 gi|314956043|gb|EFT00441.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA1]
 gi|314958449|gb|EFT02552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA1]
 gi|314976217|gb|EFT20312.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL045PA1]
 gi|315088618|gb|EFT60594.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA1]
 gi|327451091|gb|EGE97745.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA3]
 gi|328753779|gb|EGF67395.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL020PA1]
 gi|328760388|gb|EGF73957.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL099PA1]
          Length = 590

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 20  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 76

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 77  GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 133

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 134 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 189

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 190 GNLGVTTLEDLL 201


>gi|162455854|ref|YP_001618221.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum 'So ce
           56']
 gi|161166436|emb|CAN97741.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum 'So ce
           56']
          Length = 258

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 79/177 (44%), Gaps = 14/177 (7%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
                  D+ETTG D   DRIIE+G V         R +   + P GR    E+  +HGI
Sbjct: 42  DQPIAFVDVETTGRDPAGDRIIELGIVIGRSGEILTR-YNWLIHP-GRPIPAESTAIHGI 99

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122
            D  ++ KPSF+ +  E    F  + A   A+NA FD  F+ AEL+R+   P +P     
Sbjct: 100 KDADVEGKPSFAEVAEEILGCF--KGAIPAAYNATFDRSFLLAELERVGMRPREPPPAMR 157

Query: 123 ----IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                +D L+ AR  + +  +  L  +  R GI++     H A  D+     V   +
Sbjct: 158 REVDWVDPLTFARELYKNEESRALGDMAARLGISLE--KAHRATDDAEAALQVLYAL 212


>gi|222151350|ref|YP_002560506.1| hypothetical protein MCCL_1103 [Macrococcus caseolyticus JCSC5402]
 gi|222120475|dbj|BAH17810.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 850

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 8/167 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  V DIETTG +  +D II++G + ++   K   T+  F+  N  +       L  I  
Sbjct: 4   KYAVVDIETTGNNLDSDEIIQVG-IAIVQNKKIIETYDTFIACNN-EIPAFIQSLTKIDA 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L D P+FS + S      +     ++AHN +FD+ F+             P  IIDT+
Sbjct: 62  FDLVDAPNFSHVASHIIKLLD--GCVFVAHNVQFDLRFLQKYFSEAGHK-FQPRYIIDTV 118

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              +  +PS  R  L S+    GI +S  S H A+ D+   ++V+I+
Sbjct: 119 DWFKIVYPSLERYQLKSIADDLGIELS--SAHRAIDDAVATAEVFIE 163


>gi|168490899|ref|ZP_02715042.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC0288-04]
 gi|221231602|ref|YP_002510754.1| exonuclease [Streptococcus pneumoniae ATCC 700669]
 gi|225854318|ref|YP_002735830.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae JJA]
 gi|183574742|gb|EDT95270.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC0288-04]
 gi|220674062|emb|CAR68575.1| putative exonuclease [Streptococcus pneumoniae ATCC 700669]
 gi|225723482|gb|ACO19335.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae JJA]
          Length = 816

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176


>gi|149010565|ref|ZP_01831936.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP19-BS75]
 gi|147765046|gb|EDK71975.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP19-BS75]
          Length = 816

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176


>gi|322389907|ref|ZP_08063447.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           parasanguinis ATCC 903]
 gi|321143343|gb|EFX38781.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           parasanguinis ATCC 903]
          Length = 836

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 90/187 (48%), Gaps = 14/187 (7%)

Query: 2   IRKNKMRKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           + + K +  + D+E T  G ++K   II++G V + D     ++++  + P+ R      
Sbjct: 20  MTRQKRKYAIVDLEATSAGSNAK---IIQVGIVIIEDGR-IRQSYETDVNPHER-LDEHI 74

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L G+TD  LK  P F+ +  E ++    ++A ++AHN KFD   +   L     +   
Sbjct: 75  KQLTGLTDARLKKAPEFAQVAKEIFELI--EDAVFVAHNVKFDANLLAEALFWEGFELTT 132

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           P   IDT+ +++  +P+  R +L +L     I + H   H AL D+   + + +K+    
Sbjct: 133 P--RIDTVELSQIFYPTLERYNLGALAAELEIELHH--AHSALADAMATAQLLLKLREKI 188

Query: 179 SQINFGF 185
           + +  G 
Sbjct: 189 ASLPRGL 195


>gi|303255784|ref|ZP_07341825.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS455]
 gi|303260270|ref|ZP_07346241.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP-BS293]
 gi|303261476|ref|ZP_07347424.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP14-BS292]
 gi|303264144|ref|ZP_07350065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS397]
 gi|303266246|ref|ZP_07352137.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS457]
 gi|303268684|ref|ZP_07354474.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS458]
 gi|301801646|emb|CBW34344.1| putative exonuclease [Streptococcus pneumoniae INV200]
 gi|302597168|gb|EFL64273.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS455]
 gi|302637610|gb|EFL68097.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP14-BS292]
 gi|302638594|gb|EFL69058.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP-BS293]
 gi|302641744|gb|EFL72101.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS458]
 gi|302644176|gb|EFL74432.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS457]
 gi|302646549|gb|EFL76775.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS397]
          Length = 816

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176


>gi|237649440|ref|ZP_04523692.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae CCRI 1974]
          Length = 831

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 22  RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 78

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 79  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 134

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 135 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 191


>gi|225856476|ref|YP_002737987.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae P1031]
 gi|225724714|gb|ACO20566.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae P1031]
          Length = 816

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176


>gi|149003435|ref|ZP_01828324.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP14-BS69]
 gi|237821000|ref|ZP_04596845.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758618|gb|EDK65616.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP14-BS69]
          Length = 816

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176


>gi|169833275|ref|YP_001694265.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae Hungary19A-6]
 gi|168995777|gb|ACA36389.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae Hungary19A-6]
 gi|327390159|gb|EGE88502.1| putative dnaQ exonuclease/DinG family helicase [Streptococcus
           pneumoniae GA04375]
          Length = 816

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176


>gi|261885284|ref|ZP_06009323.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 243

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 95/184 (51%), Gaps = 13/184 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIET+G    + +IIEIGA++LLD  +  R F+ F+            +L GI   
Sbjct: 51  FCVVDIETSGG-INSGQIIEIGALKLLDGVEIGR-FESFV--YAPNVPENISELTGIYAA 106

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   PS +++  +F  F    ++ ++AHN KFD  FI+  L+R+    L  +R I T+ 
Sbjct: 107 DLAKAPSLANVLEKFKLFLG--DSVFVAHNVKFDYDFISISLERLGFGMLL-NRRICTID 163

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +ARR   S +  L +L +  GI+ +H   H AL D+   ++++ + +    ++ +  ++ 
Sbjct: 164 LARRTIISQKYGLGTLKELLGISNAH---HRALNDAIAAAEIFKECV---KRVPWSIQSV 217

Query: 189 EDRF 192
           ED  
Sbjct: 218 EDLI 221


>gi|168484461|ref|ZP_02709413.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1873-00]
 gi|172042316|gb|EDT50362.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1873-00]
 gi|332203958|gb|EGJ18025.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA47368]
          Length = 816

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176


>gi|167837493|ref|ZP_02464376.1| possible DNA polymerase/helicase [Burkholderia thailandensis
           MSMB43]
          Length = 379

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG V +++ S    T+   + P  +   P   +L GITD  
Sbjct: 16  AFVDLETTGGSAAEHRITEIGVV-VVNASHV-STWTTLVDP-RQPIPPFIQQLTGITDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F+ I S  ++  +     ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFADIASALFERLD--GKLFVAHNASFDRGFLRAEFERAGVAFNPD--VLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|289426896|ref|ZP_06428622.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165]
 gi|295130296|ref|YP_003580959.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Propionibacterium acnes SK137]
 gi|289159985|gb|EFD08163.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165]
 gi|291376452|gb|ADE00307.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Propionibacterium acnes SK137]
 gi|313772552|gb|EFS38518.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL074PA1]
 gi|313802090|gb|EFS43322.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA2]
 gi|313838422|gb|EFS76136.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL086PA1]
 gi|314918505|gb|EFS82336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA1]
 gi|314925502|gb|EFS89333.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA3]
 gi|314963121|gb|EFT07221.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA1]
 gi|314973624|gb|EFT17720.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA1]
 gi|315077585|gb|EFT49643.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA2]
 gi|315084628|gb|EFT56604.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA2]
 gi|327447777|gb|EGE94431.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA1]
 gi|327453554|gb|EGF00209.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA2]
          Length = 584

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 14  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 70

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 71  GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 127

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 128 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 183

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 184 GNLGVTTLEDLL 195


>gi|332204813|gb|EGJ18878.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA47901]
          Length = 816

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176


>gi|301793959|emb|CBW36355.1| putative exonuclease [Streptococcus pneumoniae INV104]
          Length = 816

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176


>gi|332202666|gb|EGJ16735.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA41317]
          Length = 816

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176


>gi|315658260|ref|ZP_07911132.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           lugdunensis M23590]
 gi|315496589|gb|EFU84912.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           lugdunensis M23590]
          Length = 893

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + D      T+   +     +  P    L  I ++
Sbjct: 6   YAVVDLETTGNQLDYDEIIQIGITFVRDQKIVG-TYHSMIN-TDVEIPPFIQALTSIEED 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK  P F  +  + +     +++ ++AHN  FD+ FI    +R N     P ++IDT+ 
Sbjct: 64  MLKQAPYFHEVAEDVYKQL--KDSVFVAHNVSFDLTFIKKAFKR-NHIHFQPKKVIDTVE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + +   P      L+ L + + I + +   H A  D+   + + IK
Sbjct: 121 LFKIAFPTDKSYQLSELAEAHHIPLDN--AHRADEDATTTAKLMIK 164


>gi|225858612|ref|YP_002740122.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae 70585]
 gi|225720171|gb|ACO16025.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae 70585]
          Length = 816

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176


>gi|315648491|ref|ZP_07901590.1| hypothetical protein PVOR_24689 [Paenibacillus vortex V453]
 gi|315276185|gb|EFU39531.1| hypothetical protein PVOR_24689 [Paenibacillus vortex V453]
          Length = 246

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 9/173 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEA 59
              +++  +VFD+ETTG + +  D I+  GAV ++        +F + +  +G    P  
Sbjct: 54  TPLDELEVVVFDLETTGFNHQHGDEILSFGAVRVIGEQVIEQESFHMIVN-SGSPVPPFI 112

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L GIT   +   P       +F  F   +    +AH A  D GF+NA L + +K  L 
Sbjct: 113 TELTGITQHMVDAAPPLMEGLHDFMAFVGGR--VLVAHAAAHDRGFLNAALWKTSKVRL- 169

Query: 120 PSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             R++DT+ +A+R +P      L+ L +   I +  R  H AL D+ + + ++
Sbjct: 170 THRLLDTMMLAQRLYPEQTDYSLDELLRNCSIPVEGR--HHALSDARMTARLW 220


>gi|307127646|ref|YP_003879677.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           pneumoniae 670-6B]
 gi|306484708|gb|ADM91577.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae 670-6B]
          Length = 816

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176


>gi|268317061|ref|YP_003290780.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252]
 gi|262334595|gb|ACY48392.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252]
          Length = 616

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 10/164 (6%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66
             VFD ETTGL  +  D II IGAV ++        TF   + P  R  S +++++HGI 
Sbjct: 422 YTVFDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEETFDQLVNP-RRPISLDSVRVHGIQ 480

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+DKP    +   F+ F   ++   + HN  FD+ FI  + + +      P  ++DT
Sbjct: 481 PVLLQDKPPIEEVLPRFYRF--ARDTVLVGHNVAFDLKFIRQKEKALGLRFDQP--VLDT 536

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + +A    P  ++  L+ L   +GI    R  H AL D+ + ++
Sbjct: 537 MLLAAVVDPERQHYGLDELAAAFGIEPVGR--HSALGDALITAE 578


>gi|148992472|ref|ZP_01822167.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP9-BS68]
 gi|149007688|ref|ZP_01831305.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP18-BS74]
 gi|168489814|ref|ZP_02714013.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae SP195]
 gi|147760843|gb|EDK67814.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP18-BS74]
 gi|147928789|gb|EDK79802.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP9-BS68]
 gi|183571801|gb|EDT92329.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae SP195]
 gi|332077219|gb|EGI87681.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA17545]
          Length = 816

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176


>gi|332534627|ref|ZP_08410459.1| ribonuclease T [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035907|gb|EGI72388.1| ribonuclease T [Pseudoalteromonas haloplanktis ANT/505]
          Length = 234

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA-VELLDYSK---TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G + + D ++EI A V  +D       + T    + P  G      A+  +
Sbjct: 18  PVVIDVETAGFNKETDALLEIAASVLKMDDEGLLSIDHTVHFHVQPFEGANIEQAAIDFN 77

Query: 64  GITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI     L+       +  E              Q +  +AHNA FD GF+NA ++R  I
Sbjct: 78  GIDPFSPLRGAVPEDEVIKEICKVVRKAQKAAGCQRSVIVAHNAAFDHGFLNAAIERNNI 137

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT S+A       +  L   C+  GI   +   H AL D+   +++Y  
Sbjct: 138 KRTPFHPFVSFDTTSLAGLAL--GQTVLAKACRAAGIEFDNSQAHSALYDTERTAELYCL 195

Query: 174 MMVGGSQIN 182
           ++    Q+ 
Sbjct: 196 IVNRWQQLG 204


>gi|307708507|ref|ZP_07644972.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus mitis NCTC 12261]
 gi|307615423|gb|EFN94631.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus mitis NCTC 12261]
          Length = 816

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPKLEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLQEKMAQLPKGL 176


>gi|168492961|ref|ZP_02717104.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC3059-06]
 gi|183577104|gb|EDT97632.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC3059-06]
          Length = 816

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    +N  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--ENGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176


>gi|217970248|ref|YP_002355482.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|217507575|gb|ACK54586.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 203

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 9/161 (5%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            V D ETTGL   + DR  EI AV + D    +R +Q  +   G +       L GI++ 
Sbjct: 5   AVIDFETTGLSPAQGDRATEIAAVIVRDGRVVDR-YQSLMN-AGVRIPAHIESLTGISNA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+ + +  E  DF        +AHNA FD  F +AEL RI +        + +L 
Sbjct: 63  MIRSAPTAAQVMREVADFIG--GIPMVAHNAAFDAKFWDAELARIER--ARKQDFVCSLL 118

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           ++RR  P +  + L +L +   + ++ R  H AL D+ + +
Sbjct: 119 LSRRLFPLAPSHRLGALVEYARLPVAGR-FHRALADAEMAA 158


>gi|241896118|ref|ZP_04783414.1| DNA-directed DNA polymerase III epsilon subunit [Weissella
           paramesenteroides ATCC 33313]
 gi|241870632|gb|EER74383.1| DNA-directed DNA polymerase III epsilon subunit [Weissella
           paramesenteroides ATCC 33313]
          Length = 970

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 8/173 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             NK    V D+ETT   S++ RII+I A+  +   K    F   + P+        ++L
Sbjct: 28  MLNKDIYAVVDLETTRTTSESGRIIQI-AIAFVQNKKIINQFSTLINPH-ESIPRNVVQL 85

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI  E +   PSF  +              ++AHN  FD+ F+NAE QRI  + L+   
Sbjct: 86  TGINAEMVAGAPSFEEVAESIHTML--TGTIFVAHNVNFDLPFLNAEFQRIGMNTLNLVA 143

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            IDT+++++   P++    L  L     + + H   H A  D+   +++ I++
Sbjct: 144 -IDTVTLSQIVWPTAPGFRLVDLTSY--LALVHGRPHQADSDALATAELLIQI 193


>gi|168486184|ref|ZP_02710692.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1087-00]
 gi|183570792|gb|EDT91320.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1087-00]
          Length = 816

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176


>gi|313827785|gb|EFS65499.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA2]
          Length = 590

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 20  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 76

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 77  GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 133

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 134 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 189

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 190 GNLGVTTFEDLL 201


>gi|148985845|ref|ZP_01818939.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP3-BS71]
 gi|148990415|ref|ZP_01821581.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP6-BS73]
 gi|168575465|ref|ZP_02721401.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae MLV-016]
 gi|194397188|ref|YP_002037447.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae G54]
 gi|307067407|ref|YP_003876373.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200]
 gi|147921991|gb|EDK73115.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP3-BS71]
 gi|147924320|gb|EDK75413.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP6-BS73]
 gi|183578476|gb|EDT99004.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae MLV-016]
 gi|194356855|gb|ACF55303.1| Dna polymerase III, epsylon subunit/ATP-dependent helicase DinG
           [Streptococcus pneumoniae G54]
 gi|301799817|emb|CBW32386.1| putative exonuclease [Streptococcus pneumoniae OXC141]
 gi|306408944|gb|ADM84371.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200]
          Length = 816

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176


>gi|332652795|ref|ZP_08418540.1| exonuclease [Ruminococcaceae bacterium D16]
 gi|332517941|gb|EGJ47544.1| exonuclease [Ruminococcaceae bacterium D16]
          Length = 195

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 10/201 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I FD+ET   +S NDRI  IG V +++           + P  R  S   + L GIT 
Sbjct: 4   RYIAFDVETP--NSANDRISAIG-VTVVERGAVVEQHDYLVNPETRFAS-FNVALTGITP 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + DKP+F  ++ E    F+      IAHNA FD+  +   L+              T 
Sbjct: 60  EMVADKPAFPQLWQELEPIFDSG--LLIAHNAPFDMSVLAKCLRDYGIRWRPSVSYACTC 117

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            ++RR  P    + LN+LC   G+ + H   H A  DS    ++ +  +  G+ +    +
Sbjct: 118 QMSRRLLPQLPNHKLNTLCDFLGLELDH---HRAGSDSLACGEILLHHLHSGADLTPFIR 174

Query: 187 TNEDRFFKEEKKTVPNISLLK 207
           T +    +  +         +
Sbjct: 175 TYDLIAIRTMQPARRGWGSRR 195


>gi|157151695|ref|YP_001450717.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157076489|gb|ABV11172.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 824

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 11/175 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M RKN M+  + D+E TG  S   +II++G V L D  +   T+Q  + P+         
Sbjct: 1   MKRKN-MKYAIVDLEATGTGS-TAKIIQVGIVILEDG-EIKETYQTDINPHEA-LEEHIK 56

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G++D+ L   P FS +  E ++    ++A ++AHN KFD   +   L     D L P
Sbjct: 57  QLTGLSDQRLSQAPDFSQVAREIYELI--EDAVFVAHNVKFDANLLAESLFWEGFDLLSP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+   P+  +  L+SLC+   I +     H A+ D+   + +++K+
Sbjct: 115 --RVDTVELAQVVFPTYEKYGLSSLCELLEIPLE--QAHTAISDAMATALLFLKI 165


>gi|27366371|ref|NP_761899.1| ribonuclease T [Vibrio vulnificus CMCP6]
 gi|320156882|ref|YP_004189261.1| ribonuclease T [Vibrio vulnificus MO6-24/O]
 gi|29611837|sp|Q8D882|RNT_VIBVU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|27362572|gb|AAO11426.1| ribonuclease T [Vibrio vulnificus CMCP6]
 gi|319932194|gb|ADV87058.1| ribonuclease T [Vibrio vulnificus MO6-24/O]
          Length = 217

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 22/213 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L      +     T    + P +G
Sbjct: 8   LTLKKRFRGYFPVVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFDG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                EAL+ +GI D F  L+   +      E +     +        A  +AHNA FD+
Sbjct: 68  ANLEKEALEFNGIRDPFSPLRGAVTEQEALKEIYKLIRREQKAADCSRAIMVAHNAAFDL 127

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+NA  +R      P  P    DT +++   +   +  L   CK  G+   +R  H AL
Sbjct: 128 SFVNAANERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFK 194
            D+   ++++  ++     +  G+   ED   K
Sbjct: 186 YDTEKTAELFCGIVNKWKALG-GWPLIEDENEK 217


>gi|315108203|gb|EFT80179.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA2]
          Length = 584

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 14  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 70

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 71  GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 127

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 128 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 183

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 184 GNLGVTTFEDLL 195


>gi|86133336|ref|ZP_01051918.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
 gi|85820199|gb|EAQ41346.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
          Length = 359

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 16/203 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +  D  +    F   + P  +      ++L GI ++
Sbjct: 2   YAILDIETTGGKFNEEGITEIAIYKY-DGQEIVDQFISLINPE-KPIQEFVVRLTGINNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK+ P F  +     +    +N   +AHN+ FD   +  E  R+  D    +  + T+ 
Sbjct: 60  MLKNAPKFYEVAKRIVEI--TKNCIIVAHNSAFDYRILRTEFDRLGFDFERNT--LCTVE 115

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-------GSQ 180
           +++          L  L K  GI IS R  H A  D+     ++  ++          + 
Sbjct: 116 LSQALILDQPSYSLGKLTKSLGIPISDR--HRATGDALATVKLFKLLLEKDHKKTIIQNA 173

Query: 181 INFGFKTNEDRFFKEEKKTVPNI 203
           I +  K  E +  K   + +P +
Sbjct: 174 IKYFDKRLEKQKLKNLIEEIPAV 196


>gi|327332247|gb|EGE73984.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL096PA3]
          Length = 584

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 14  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 70

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 71  GITHAMVRSAPSLSTVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 127

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 128 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 183

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 184 GNLGVTTLEDLL 195


>gi|237654661|ref|YP_002890975.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237625908|gb|ACR02598.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 482

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 88/196 (44%), Gaps = 9/196 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R    D+E+TG     DRI EI  + + D     R ++  + P G+   P   ++ GI+D
Sbjct: 6   RLAFIDVESTGAHPVRDRITEIAILRVEDGEVVAR-WESLVAP-GQPIPPLIEEVTGISD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + + P+F  +          +   ++AH+A+FD GFI     RI ++   P  ++ T+
Sbjct: 64  AMVAEAPAFEVLADTVAALL--EGCVFVAHSARFDYGFIRNAFTRIGREFEAP--VLCTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            ++R  +P   R+ L++L +R+G+  +  ++H A+ D  +L      +  G +       
Sbjct: 120 KLSRALYPEHHRHGLDALIERHGLVCA--ARHRAMGDVEVLWQFVRGLEAGFAPEVLARA 177

Query: 187 TNEDRFFKEEKKTVPN 202
                    +   +P 
Sbjct: 178 AARAMKAPTQPPGLPE 193


>gi|160901638|ref|YP_001567219.1| DNA polymerase III, epsilon subunit [Petrotoga mobilis SJ95]
 gi|160359282|gb|ABX30896.1| DNA polymerase III, epsilon subunit [Petrotoga mobilis SJ95]
          Length = 187

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 9/177 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPE 58
           M  K+K+  +  D ETTGL+ +  DRIIEI A+ + D     +  F   + PN      E
Sbjct: 1   MKVKDKV-FLALDFETTGLNPELGDRIIEIAAIPIYDKKINFKYAFHTLVNPNIF-IPGE 58

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             K H + ++ + + PS S +F  F ++ +  ++  ++HN K D+ F++   +      +
Sbjct: 59  VSKFHKLNNQDISNAPSLSEVFPRFKEYID--DSIIVSHNVKMDLRFLDIAAKESGMFSI 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D +  IDTL I++        +L  L K++ + I  +  H A  D+   + ++ K +
Sbjct: 117 D-NYYIDTLEISKYYFDKGPYNLEFLSKKFNLGI--KQFHRAWDDALSTAKLFQKYI 170


>gi|289167702|ref|YP_003445971.1| ATP-dependent helicase DinG [Streptococcus mitis B6]
 gi|288907269|emb|CBJ22104.1| ATP-dependent helicase DinG [Streptococcus mitis B6]
          Length = 816

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIVD-HYTSDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  KRLAQAPDFSQVARKIFDLV--KDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMAQLPKGL 176


>gi|148997118|ref|ZP_01824772.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP11-BS70]
 gi|147756818|gb|EDK63858.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP11-BS70]
          Length = 816

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176


>gi|289426266|ref|ZP_06428012.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187]
 gi|289153431|gb|EFD02146.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187]
          Length = 584

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 14  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 70

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   ++  PS S+I   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 71  GITHAMVRSAPSLSAILPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 127

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 128 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 183

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 184 GNLGVTTLEDLL 195


>gi|125624796|ref|YP_001033279.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124493604|emb|CAL98589.1| Probable ATP-dependent helicase dinG homolog [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300071596|gb|ADJ60996.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 791

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 87/168 (51%), Gaps = 8/168 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E T   S  ++II+IG + L++  K   T+   + P+     P   +L G++D
Sbjct: 3   RYAVVDLEATDAHSSENKIIQIG-IALVEGGKIVETYSTEVNPH-EPLLPRISELTGLSD 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + LK  P FS + SE        ++ ++AHNA+FD G +         +  +    +DT+
Sbjct: 61  KQLKSAPDFSEVASEVRKLL--TDSVFVAHNARFDYGLLEKSFLNAGLE-FNEMLRVDTV 117

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +AR  +P+  +  L +L ++  + ++H   H A+ D++  +++ I++
Sbjct: 118 DLARVFYPTFEKYGLEALSEK--LDLAHDHPHAAVSDAYATAELLIRI 163


>gi|15900695|ref|NP_345299.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae TIGR4]
 gi|111658147|ref|ZP_01408844.1| hypothetical protein SpneT_02000672 [Streptococcus pneumoniae
           TIGR4]
 gi|149021672|ref|ZP_01835703.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72]
 gi|14972279|gb|AAK74939.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus pneumoniae TIGR4]
 gi|147930133|gb|EDK81119.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72]
          Length = 816

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLRKKMTQLPKGL 176


>gi|54309733|ref|YP_130753.1| ribonuclease T [Photobacterium profundum SS9]
 gi|54036326|sp|Q6LP25|RNT_PHOPR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|46914171|emb|CAG20951.1| putative ribonuclease T [Photobacterium profundum SS9]
          Length = 223

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 21/200 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGR 53
             K++ R    +V D+ET G ++K D ++EI AV    +   + K   T    + P  G 
Sbjct: 9   TLKSRFRGYFPVVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPASTIHFHVAPFEGA 68

Query: 54  KNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVG 104
               EAL+ +GI D F  L+   S  +   E +    ++        A  +AHNA FD  
Sbjct: 69  VLHKEALEFNGIRDPFSPLRGAVSEETALKEIYKQIRKEQKTADCSRAIMVAHNANFDHS 128

Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+    +R  + ++P  P    DT +++       +  L   CK  GI   ++  H AL 
Sbjct: 129 FVMEASERARLKRNPFHPFATFDTAALSGLAF--GQTVLAKACKTAGIAFDNKEAHSALY 186

Query: 163 DSHLLSDVYIKMMVGGSQIN 182
           D+   ++++ +++    ++ 
Sbjct: 187 DTERTAELFCEIVNKWKKLG 206


>gi|296110415|ref|YP_003620796.1| ATP-dependent helicase DinG [Leuconostoc kimchii IMSNU 11154]
 gi|295831946|gb|ADG39827.1| ATP-dependent helicase DinG [Leuconostoc kimchii IMSNU 11154]
          Length = 801

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 9/175 (5%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+ETTG   +K  RII+IG +  +   K    F+ F+ P G+  +    +L  I+ 
Sbjct: 7   FVVVDLETTGQSVAKGGRIIQIG-MTFIKQRKIVDHFESFVNP-GQLIARNIQQLTHISQ 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +K+ P F  I     +    ++A  IAHN  FD  ++N E  R     L+ +  IDT+
Sbjct: 65  KEVKNAPYFEEIAPLLQNLL--KDAVIIAHNINFDYPYLNDEFVRTGFQKLNSAA-IDTV 121

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +A+   P++    L  L     IT+++   H A  D+H  + +++K+     Q+
Sbjct: 122 QLAQILLPTAPGYRLLDLTTYLDITLNN--AHRANADAHATALLFLKLWQRAEQL 174


>gi|171317951|ref|ZP_02907125.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171096851|gb|EDT41725.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 205

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            V D ETTGL     DR  EI  + L D    +R +Q  +   GR+   + + L GIT+E
Sbjct: 5   AVLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLMN-AGRRIPSDVVALTGITNE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  S +  E   F    N   +AHNA FD  F  AEL  +            T+ 
Sbjct: 63  MIASAPPVSQVMKEAAAFVG--NHPVVAHNAGFDKRFWQAELGMLGMAAEHAFA--CTML 118

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +ARR +P +R + L+SL     +  + R  H A++D+ + S ++ ++
Sbjct: 119 VARRIYPHARSHRLSSLADMLRLPQTGR-AHRAMVDAEIASHLWCRL 164


>gi|284032480|ref|YP_003382411.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
           17836]
 gi|283811773|gb|ADB33612.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
           17836]
          Length = 415

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 10/206 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTGL      R+IEI  V L  + +    +   L P  R   P+   +HGI  
Sbjct: 2   YAVIDTETTGLLPGHRHRVIEIAVVLLDQHGRFEHEWVTLLNPQ-RDLGPQ--HIHGILT 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126
             +   P F  +          +    + HN +FD+GF+ AE  R+    PL   R + T
Sbjct: 59  ADVLAAPEFVDVARHLGALLAGRM--VVGHNVEFDLGFLRAEFARLGHVVPLITERSMCT 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +++A   +P S+  L + C   GI++  +  H AL D+   ++++   +         ++
Sbjct: 117 MALAGYLYPGSKRTLGACCAAAGISL--QGWHSALADTRATAELFATYLRSFPSPP-PWQ 173

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPL 212
              +         +P  +     +P+
Sbjct: 174 WAYEEIRGLPWPELPGTTFTPTVRPV 199


>gi|156975262|ref|YP_001446170.1| ribonuclease T [Vibrio harveyi ATCC BAA-1116]
 gi|269962098|ref|ZP_06176452.1| ribonuclease T [Vibrio harveyi 1DA3]
 gi|166200023|sp|A7MUL2|RNT_VIBHB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|156526856|gb|ABU71942.1| hypothetical protein VIBHAR_02991 [Vibrio harveyi ATCC BAA-1116]
 gi|269833182|gb|EEZ87287.1| ribonuclease T [Vibrio harveyi 1DA3]
          Length = 214

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L      +     T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHIEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                EAL+ +GI D F  L+   S      E +    ++        A  +AHNA FD+
Sbjct: 68  ANLEKEALEFNGIRDPFSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDL 127

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+NA  +R      P  P    DT +++   +   +  L   CK  G+   +R  H AL
Sbjct: 128 SFVNAANERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMEFDNREAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 186 YDTQQTAELFCGIVNKWKALG 206


>gi|305665063|ref|YP_003861350.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170]
 gi|88709815|gb|EAR02047.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170]
          Length = 461

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 9/170 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG   K ++I EI   +   Y   +  F   + P   +       L GI ++
Sbjct: 2   YTIVDIETTGNGIKGNKITEISIFKYDGYDIIDE-FTSLVNPEC-EIPYFITGLTGIDND 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P    I  +  +    ++  ++AH+  FD G I  EL+ I  D     + + T+ 
Sbjct: 60  LVRDAPKLIEISHKILEI--TKDTIFVAHSVGFDYGVIKNELKTIGLDF--TRKKLCTVR 115

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           ++R+  P      L  +C    I ++ R  H A  D+H  + ++ K++  
Sbjct: 116 LSRKLIPGYNSYSLGKICSALKIPLTDR--HRARGDAHATTLLFQKLLRA 163


>gi|116512711|ref|YP_811618.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108365|gb|ABJ73505.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11]
          Length = 791

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 87/168 (51%), Gaps = 8/168 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E T   S  ++II+IG + L++  K   T+   + P+     P   +L G++D
Sbjct: 3   RYAVVDLEATDAHSSENKIIQIG-IALVEGGKIVETYSTEVNPH-EPLLPRISELTGLSD 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + LK  P FS + SE        ++ ++AHNA+FD G +         +  +    +DT+
Sbjct: 61  KQLKSAPDFSEVASEVRKLL--TDSVFVAHNARFDYGLLEKSFLNAGLE-FNEMLRVDTV 117

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +AR  +P+  +  L +L ++  + ++H   H A+ D++  +++ I++
Sbjct: 118 DLARVFYPTFEKYGLEALSEK--LDLAHDHPHAAVSDAYATAELLIRI 163


>gi|302519143|ref|ZP_07271485.1| DNA polymerase III [Streptomyces sp. SPB78]
 gi|302428038|gb|EFK99853.1| DNA polymerase III [Streptomyces sp. SPB78]
          Length = 664

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 12/205 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ET+GL ++ DR++ +  V +    +    F   + P      P  + +HG+T E L 
Sbjct: 75  VDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTLVDPGC---DPGPVDVHGLTRERLS 131

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P+F  I          Q+   +AHNA+FD  F+  E  R  +  L  +R + TL++ R
Sbjct: 132 GAPAFGQIAGRLGAML--QDRVLVAHNAQFDYDFLAHEFARA-RLYLPVTRRLCTLALNR 188

Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS---QINFGFKT 187
           +  P +R+  L SL   YG+  +    H AL D+ +L+ ++++  +  +    +   F T
Sbjct: 189 QVDPPTRDMKLGSLAAHYGVPRT--RAHDALDDTRVLAGIFLRATLREAARLDLPLPFVT 246

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPL 212
              R   +     P      R+   
Sbjct: 247 CPPRQDPQFAPQPPKTPCAYRNPGR 271


>gi|227550341|ref|ZP_03980390.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium
           TX1330]
 gi|257886431|ref|ZP_05666084.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501]
 gi|227180543|gb|EEI61515.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium
           TX1330]
 gi|257822287|gb|EEV49417.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501]
          Length = 297

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 6/166 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGL   +  I++IGA++     + +R +Q  + P     S    K+ G+  E
Sbjct: 126 YVVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQ-NIKPFRSNISKRITKITGLELE 184

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P+F     +   F +      +AHNA FD+ F+  +L   N +     R+IDTL 
Sbjct: 185 DVVNMPTFEDFSPQLMSFISC--YTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLP 242

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +ARR   +  + L +L     +     + H AL D  + + VY  +
Sbjct: 243 LARRHFETPNHKLITLKDYLNLDN---NSHDALEDCLVTNKVYQYI 285


>gi|254517741|ref|ZP_05129797.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium
           sp. 7_2_43FAA]
 gi|226911490|gb|EEH96691.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium
           sp. 7_2_43FAA]
          Length = 188

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I+  K R I FD+ETTGL   ND+IIE+GAV   +     + +   +          A  
Sbjct: 21  IKNLKNRYIAFDVETTGLSPINDKIIEVGAVLFENGEII-KKYSYLVNLE-VVIPASATA 78

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPL 118
           ++ IT+E ++D     ++++E   F ++   +     AHNA FD+ FI+  L R+  D  
Sbjct: 79  VNHITNEMIQDATKEDTVYAELVKFLDDALKEQTVICAHNATFDMKFISETLMRLGYDGK 138

Query: 119 DPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                +DTLS++R       N   +++   +   + +   H A+ D+ +   + 
Sbjct: 139 IH--YVDTLSLSRNLFKGLHNYKQDTVATHF--ELVNFQSHRAVSDAEICGRIL 188


>gi|115359655|ref|YP_776793.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
 gi|172064467|ref|YP_001812118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
 gi|115284943|gb|ABI90459.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
 gi|171996984|gb|ACB67902.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 205

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            V D ETTGL     DR  EI  + L D    +R +Q  +   GR+   + + L GIT+E
Sbjct: 5   AVLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLMN-AGRRIPSDVVALTGITNE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  S +  E   F    N   +AHNA FD  F  AEL  +            T+ 
Sbjct: 63  MIASAPPVSQVMKEAAAFVG--NHPVVAHNAGFDKRFWQAELGMLGMAAEHAFA--CTML 118

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +ARR +P +R + L+SL     +  + R  H A++D+ + S ++ ++
Sbjct: 119 VARRIYPHARSHRLSSLADMLRLPQTGR-AHRAMVDAEIASHLWCRL 164


>gi|303271977|ref|XP_003055350.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
 gi|226463324|gb|EEH60602.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
          Length = 1468

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 60/182 (32%), Positives = 90/182 (49%), Gaps = 17/182 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTGL    DRIIEI A +L D  KT+      + P     + +  +L GIT+  
Sbjct: 308 IVFDLETTGLAKLKDRIIEIAAYDLND--KTHAPMSTLVNPGRTYLTGQITRLTGITNAM 365

Query: 70  LKD--KPSF---SSIFSEFWDFFNEQN----AEWIAHNAK-FDVGFINAELQRINKDPLD 119
           + +   PSF   + +  EF D    +         AHNA+ FD GF+ AE  RI ++  D
Sbjct: 366 VSNPGVPSFVRAAELLEEFVDEARRRGGGASVILAAHNARQFDAGFLKAEYDRIQREFPD 425

Query: 120 PSRIIDTLSIARRKHP----SSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKM 174
             R +DTL IAR+  P       + + +L  RY +  +   + H A  D+ +L ++   M
Sbjct: 426 DWRFVDTLPIARKLVPKTEVFGSHKMEALATRYDVKPVDGETAHRAGADARVLGEIVEAM 485

Query: 175 MV 176
           + 
Sbjct: 486 LG 487


>gi|269965971|ref|ZP_06180063.1| ribonuclease T [Vibrio alginolyticus 40B]
 gi|269829367|gb|EEZ83609.1| ribonuclease T [Vibrio alginolyticus 40B]
          Length = 214

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L            T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVVDVETAGFNAQTDALLEICAVTLKMDEHGVLHPASTIHFHVEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                EAL+ +GI D F  L+   S      E +    ++        A  +AHNA FD+
Sbjct: 68  ANLEKEALEFNGIRDPFSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDL 127

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           GF+NA  +R      P  P    DT +++   +   +  L   CK  G+   +R  H AL
Sbjct: 128 GFVNAANERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 186 YDTQKTAELFCGIVNKWKALG 206


>gi|296127268|ref|YP_003634520.1| DNA polymerase III, epsilon subunit [Brachyspira murdochii DSM
           12563]
 gi|296019084|gb|ADG72321.1| DNA polymerase III, epsilon subunit [Brachyspira murdochii DSM
           12563]
          Length = 252

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 9/165 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + D+ETTGL  + D+IIEIGA++  D  + +  F   +  +             IT++
Sbjct: 61  YTIIDVETTGLKPREDKIIEIGAIKYRDNKEID-YFSTLVKVDY--IPNFISSYTNITNK 117

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTL 127
            +K+ P       +F+DF  +     + +N  FD+ F+   L  + N + L  +  ID +
Sbjct: 118 MVKNAPRVDEAIKQFYDFVGDD--ILVGYNVPFDIKFLYDALYEVSNGELLLNNDFIDVM 175

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            IA+R           ++   Y I+I +   H A+ D  L S +Y
Sbjct: 176 YIAKRVLKDLENYKQVTVASYYNISIDN--LHRAMGDCKLCSAIY 218


>gi|325529244|gb|EGD06199.1| DNA polymerase III, epsilon subunit [Burkholderia sp. TJI49]
          Length = 205

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            V D ETTGL     DR  EI  + L D    +R +Q  +   GR+   + + L GIT++
Sbjct: 5   AVLDFETTGLSPNLGDRATEIAVILLRDGQIVDR-YQSLMN-AGRRIPSDVVALTGITND 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  + +  E   F  +     +AHNA FD  F  AEL R++           T+ 
Sbjct: 63  MIASAPPAAKVMKEAAAFVGKH--AVVAHNAGFDKRFWQAELGRLDVSAEHAFA--CTML 118

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +ARR +P +R + L+SL +   +  S R  H A++D+ +   ++ ++
Sbjct: 119 VARRIYPDARSHRLSSLAEMLQLPKSGR-AHRAMVDAEMAGHLWCRL 164


>gi|257900260|ref|ZP_05679913.1| DNA polymerase subunit III [Enterococcus faecium Com15]
 gi|257838172|gb|EEV63246.1| DNA polymerase subunit III [Enterococcus faecium Com15]
          Length = 295

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 6/166 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGL   +  I++IGA++     + +R +Q  + P     S    K+ G+  E
Sbjct: 124 YVVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQ-NIKPFRSNISKRITKITGLELE 182

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P+F     +   F +      +AHNA FD+ F+  +L   N +     R+IDTL 
Sbjct: 183 DVVNMPTFEDFSPQLMSFISC--YTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLP 240

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +ARR   +  + L +L     +     + H AL D  + + VY  +
Sbjct: 241 LARRHFETPNHKLITLKDYLNLDN---NSHDALEDCLVTNKVYQYI 283


>gi|116333503|ref|YP_795030.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367]
 gi|116098850|gb|ABJ63999.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367]
          Length = 948

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V DIETTG      DRII+IG V  + +++    F+  + P  ++      +L GIT+
Sbjct: 7   YAVVDIETTGTSVTDGDRIIQIGCV-FVQHNQVINHFETDVNP-LKEIPAAISRLTGITN 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++  P F  +    +      N  ++AHN  FD+ FINAEL+R+    L P   +DT+
Sbjct: 65  KRVRHAPLFDDVAGTLYSLL--TNTVFVAHNVNFDLPFINAELERVGYPAL-PIAAVDTV 121

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           S+++   P++    L  L + + I   H + H A  D+   ++++I
Sbjct: 122 SLSQILLPTATSFRLRDLSRLFNIE--HDNPHSADSDASATAELFI 165


>gi|157165763|ref|YP_001466765.1| DNA polymerase III subunit epsilon [Campylobacter concisus 13826]
 gi|112800127|gb|EAT97471.1| DNA polymerase III subunit epsilon [Campylobacter concisus 13826]
          Length = 267

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 15/205 (7%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++    V DIETTG    N +IIEIGA+++ + ++  R F+ F+            +L G
Sbjct: 72  SEQEFCVVDIETTGGT-TNGQIIEIGAIKMKNGTEIGR-FESFVA--ASVVPENITELTG 127

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I    L   P+  ++   F  F     + +IAHN  FD GFI+  L  I    L  +R +
Sbjct: 128 IRASDLVGAPNLLNVLERFKIFLGT--SVFIAHNVNFDYGFISHSLNEIGLGILL-NRKL 184

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            T+ ++RR   S +  L SL +  GI  +H   H AL D+   ++++   +     + F 
Sbjct: 185 CTIDLSRRTIASQKYGLGSLKELLGINNTH---HRALNDAIAAAEIFKVCL---KSLPFS 238

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRD 209
            +T ED       K  P++ L    
Sbjct: 239 IQTTEDLI--SFSKNAPSVKLKPEP 261


>gi|314968043|gb|EFT12142.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA1]
          Length = 584

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 14  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 70

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   ++  PS S++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 71  GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 127

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 128 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 183

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 184 GNLGVTTFEDLL 195


>gi|307249394|ref|ZP_07531386.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306858580|gb|EFM90644.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 218

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 92/205 (44%), Gaps = 21/205 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET GL+++ D ++E+ A+ +      Y   ++     + P  G   
Sbjct: 12  KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANI 71

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
           +P++LK +GI  D  L+     +    E +            Q A  +AHNA FD  F+ 
Sbjct: 72  NPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQ 131

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A ++RIN  +DP  P  + DT ++    +   +  L   C+   I    +  H AL D+ 
Sbjct: 132 AAVKRINAKRDPFHPFAMFDTATLTGFMY--GQTVLVKACQMAKIPFDGKQAHSALYDTE 189

Query: 166 LLSDVYIKMMVGGSQINFGFKTNED 190
             ++++  M+     +  GF    D
Sbjct: 190 KTTELFCAMVNRLKDLG-GFPLVSD 213


>gi|322392254|ref|ZP_08065715.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus peroris ATCC 700780]
 gi|321144789|gb|EFX40189.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus peroris ATCC 700780]
          Length = 823

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 85/185 (45%), Gaps = 10/185 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +     R +V D+E T   SK  +II++G V + D     + +   + P+         +
Sbjct: 1   MNFRNDRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVEQ-YATDVNPHEH-LDSHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + ++    ++  ++AHN +FD   +   L     +   P 
Sbjct: 58  LTGLTDKRLAKAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLLAEFLFFEGYELRTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             IDT+ +A+  +P   + +L  LC+  GI +     H AL D+   +++++ M     Q
Sbjct: 115 -RIDTVELAQVFYPQLEKYNLGILCQELGIPLE--QAHTALSDAQATAELFLCMRQKMFQ 171

Query: 181 INFGF 185
           +  G 
Sbjct: 172 LPKGL 176


>gi|312881846|ref|ZP_07741617.1| ribonuclease T [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370492|gb|EFP97973.1| ribonuclease T [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 215

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 22/206 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKN 55
           K++ R    +V D+ET G ++  D ++EI A+    +         T    + P  G   
Sbjct: 11  KDRFRGYFPVVIDVETAGFNADTDALLEICAITLTMDEFGNLIPASTLHFHVEPFEGANI 70

Query: 56  SPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFI 106
             EAL+ +GI D F  L+   + +    E +    ++        A  +AHNA FD  F+
Sbjct: 71  EKEALEFNGIRDPFSPLRGAVTEAEALKEIYKLVRKEQKAADCNRAIIVAHNATFDHNFV 130

Query: 107 NAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            A  +R      P  P    DT +++   +   +  L   CK  G+   ++  H AL D+
Sbjct: 131 MAASERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNKEAHSALYDT 188

Query: 165 HLLSDVYIKMMVGGSQINFGFKTNED 190
              ++++  ++     +  G+   E 
Sbjct: 189 QKTAELFCGIVNKWKSLG-GWPLVEH 213


>gi|257889197|ref|ZP_05668850.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733]
 gi|257825269|gb|EEV52183.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733]
          Length = 295

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 6/166 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGL   +  I++IGA++     + +R +Q  + P     S    K+ G+  E
Sbjct: 124 YVVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQ-NIKPFRSNISKRITKITGLELE 182

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P+F     +   F +      +AHNA FD+ F+  +L   N +     R+IDTL 
Sbjct: 183 DVVNMPTFEDFSPQLMSFISC--YTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLP 240

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +ARR   +  + L +L     +     + H AL D  + + VY  +
Sbjct: 241 LARRHFETPNHKLITLKDYLNLDN---NSHDALEDCLVTNKVYQYI 283


>gi|255534253|ref|YP_003094624.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium
           3519-10]
 gi|255340449|gb|ACU06562.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium
           3519-10]
          Length = 407

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 89/227 (39%), Gaps = 10/227 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIE+ G   + + IIEI   +  D  +    F   + P   + +P   KL  I+ +
Sbjct: 2   YSVIDIESNGAGFRKESIIEIAVYKY-DGHEIVDQFISLVNPES-EITPFVQKLTKISPK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K  P F  I     +    +N   + HN  FD   +  E +R+  D    +  +DT+ 
Sbjct: 60  MVKTAPKFPEIARRVIEI--TRNTILVGHNIDFDYRMLRQEFKRLGYDFTINT--LDTIP 115

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A++  P      L  L K  GI +  +  H A  D+    D++  +++         + 
Sbjct: 116 LAKKLIPEAESYSLGKLVKSLGIPLVDQ--HRASGDARATLDLFKLLLIKDKNSEIIQQH 173

Query: 188 NEDRFFKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTLGK 233
           +E+   K     V N++  L   + +      E    +   +  L K
Sbjct: 174 HEESNGKTYLNKVRNLTQDLPAARGIIYMQNAEGKIIYFDFVDDLSK 220


>gi|261416032|ref|YP_003249715.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372488|gb|ACX75233.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326359|gb|ADL25560.1| putative DnaQ family exonuclease/DinG family helicase [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 905

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 88/217 (40%), Gaps = 8/217 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGLD + D IIE+  V   +  +        + P+  +  P    L GI+  
Sbjct: 7   FVALDLETTGLDFEKDEIIEVALVRFENG-EPKENLDFLVKPSAVELRPFIETLTGISKA 65

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+    F++I  +   F    +   +AHNA FD  F+     ++     D     D+L+
Sbjct: 66  DLESASDFATIAGQICSFVG--DLPIVAHNAVFDSKFLKQTFTKVGISY-DSHVFWDSLT 122

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-FGFK 186
           ++R        + L++L +   I  S    H AL D+     +++K +   S ++ + + 
Sbjct: 123 LSRIAFQDVPNHRLDTLVQELNIERS--RAHRALPDADACGRLFVKALEKISTMDPWIYD 180

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
                      +T+    + K   P +   T   L+ 
Sbjct: 181 ALSQVAKGSGYETLFTSKVEKLSPPKYKLPTAPALEA 217


>gi|56460902|ref|YP_156183.1| ribonuclease T [Idiomarina loihiensis L2TR]
 gi|56179912|gb|AAV82634.1| RNase T, degrades tRNA [Idiomarina loihiensis L2TR]
          Length = 215

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 20/199 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV--ELLDYSK--TNRTFQVFLCP-NGR 53
           + K + R    +V D+ET G ++K D ++EI AV  +  D        +    + P  G 
Sbjct: 8   LMKQRFRGYMPVVVDVETAGFNAKTDALLEIAAVLLDFDDDGILKPVDSVHYHVKPFEGA 67

Query: 54  KNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105
                A+  +GI     L+          E +            Q +  + HN+ FD GF
Sbjct: 68  NIEQAAIDFNGIDPHCPLRGAVEEGEALRELFKPIRKAQKAAGCQRSVLVGHNSNFDHGF 127

Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A  +R  + ++P  P    DT S+A       +  L   C+  GI    +  H AL D
Sbjct: 128 MMAAAERANLKRNPFHPFVSFDTTSLAAMTL--GQTVLIKACQAAGIEFDSKQAHSALYD 185

Query: 164 SHLLSDVYIKMMVGGSQIN 182
           +   +++Y  M+    ++ 
Sbjct: 186 TERTAELYCWMINRWKELG 204


>gi|163802823|ref|ZP_02196712.1| ribonuclease T [Vibrio sp. AND4]
 gi|159173363|gb|EDP58186.1| ribonuclease T [Vibrio sp. AND4]
          Length = 214

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L            T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVVDVETAGFNAQTDALLEICAVTLSMDDTGNLHPASTIHFHIEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                EAL+ +GI D F  L+   S      E +    ++        A  +AHNA FD+
Sbjct: 68  ANLEKEALEFNGIRDPFSPLRGAISEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDL 127

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+NA  +R      P  P    DT +++   +   +  L   CK  G+   +R  H AL
Sbjct: 128 SFVNAANERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMEFDNREAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 186 YDTQQTAELFCGIVNKWKALG 206


>gi|307131423|ref|YP_003883439.1| ribonuclease T (RNase T) [Dickeya dadantii 3937]
 gi|306528952|gb|ADM98882.1| ribonuclease T (RNase T) [Dickeya dadantii 3937]
          Length = 225

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 22/215 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++EI AV L      + + + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDETLHFHIEPFEGAILRP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +   IF        + N      +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPANPLRGAVSEYEALHEIFKAVRKGIKDLNCNRGIIVAHNATFDHSFLMAA 132

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P    DT +++       +  L   C    I       H AL D+   
Sbjct: 133 AERCGLKRNPFHPFATFDTAALSGLVL--GQTVLAKACIAAEIPFDASQAHSALYDTERT 190

Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKEEK 197
           + ++ +++     +GG  +  G  T        E+
Sbjct: 191 AQLFCELVNRWKRMGGWPLASGTDTEAPLAVGSEE 225


>gi|206560423|ref|YP_002231187.1| putative exonuclease [Burkholderia cenocepacia J2315]
 gi|198036464|emb|CAR52360.1| putative exonuclease [Burkholderia cenocepacia J2315]
          Length = 205

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 30/228 (13%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            V D ETTGL     DR  EI  + L D    +R FQ  +   GR+   + + L GIT++
Sbjct: 5   AVLDFETTGLSPNLGDRATEIAVILLRDGEVVDR-FQSLMN-AGRRIPSDVVALTGITND 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  S +  E   F  +     +AHNA FD  F  +EL  +            T+ 
Sbjct: 63  MIAAAPPASEVMKEAAAFVGKH--AVVAHNAGFDKRFWQSELGLLGMSADHAFA--CTML 118

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR +P +R + L+SL +   +  S R  H A++D+ +   ++ ++             
Sbjct: 119 VARRIYPDARSHRLSSLIEMLRLPQSGR-AHRAMVDAEMAGHLWCRL------------- 164

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
                   ++       L + D  L +R+      +    +++LG+  
Sbjct: 165 --------QQDISRTYGLDRIDHALMSRVQATTKAKVPMYLRSLGRAC 204


>gi|37526494|ref|NP_929838.1| ribonuclease T [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|54036329|sp|Q7N3W0|RNT_PHOLL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|36785925|emb|CAE14977.1| ribonuclease T [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 217

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G ++K D ++EI AV L    +       +    + P  G    P AL+  
Sbjct: 19  PVVIDVETGGFNAKTDALLEIAAVTLEMDGEGWLTPGESLHFHIEPFEGANLEPAALEFT 78

Query: 64  GITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI     L+   S        +              A  +AHNA FD  F+ A  +R   
Sbjct: 79  GIDPLNPLRGAVSEYEALHAIFKMVRKGIKNNHCNRAIIVAHNANFDHSFVMAATERTGL 138

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++        +  L   C   GI   +   H AL D+   ++++ +
Sbjct: 139 KRNPFHPFATFDTAALGGLVL--GQTILAKACITAGIPFDNNQAHSALYDTDRTAELFCE 196

Query: 174 MMVGGSQIN 182
           M+    Q+ 
Sbjct: 197 MVNRWKQLG 205


>gi|89073343|ref|ZP_01159867.1| ribonuclease T [Photobacterium sp. SKA34]
 gi|89050830|gb|EAR56304.1| ribonuclease T [Photobacterium sp. SKA34]
          Length = 221

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 21/200 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGR 53
             K++ R    +V D+ET G ++K D ++EI AV    +   + K   T    + P  G 
Sbjct: 9   TLKSRFRGYFPVVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVSPFEGA 68

Query: 54  KNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVG 104
               EAL  +GI D F  L+   S      E +    ++        A  +AHNA FD  
Sbjct: 69  ILHKEALDFNGIRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHS 128

Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+ A  +R  + ++P  P    DT +++       +  L   C+   I   +R  H AL 
Sbjct: 129 FVMAASERAKLKRNPFHPFATFDTAALSGLAF--GQTVLAKACQTANIPFDNREAHSALY 186

Query: 163 DSHLLSDVYIKMMVGGSQIN 182
           D+   ++++ +++    ++ 
Sbjct: 187 DTERTAELFCEIVNKWKKLG 206


>gi|86144205|ref|ZP_01062541.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Leeuwenhoekiella blandensis MED217]
 gi|85829335|gb|EAQ47801.1| probable DNA-directed DNA polymerase III  (epsilon subunit)
           [Leeuwenhoekiella blandensis MED217]
          Length = 458

 Score =  141 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + D+ETTG     + + E+   +  D  K    F   + P  R      + L GI + 
Sbjct: 2   YAILDLETTGGKYNEEGVTEVAIYKF-DGHKVVDQFISLVNPE-RPIQAFVVGLTGINNA 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P F  +     +    Q+   +AHNA+FD   +  E  R+  D     + + T+ 
Sbjct: 60  MLRNAPKFYEVAKRIIEI--TQDCIIVAHNAQFDYRILQLEFDRLGYDY--QRKSLCTVE 115

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +A+   P      L  L +  GI I+ R  H A  D+     ++  ++ 
Sbjct: 116 LAQELLPGQESYSLGKLVRNLGIPITDR--HRANGDALATVKLFKLLLA 162


>gi|242373764|ref|ZP_04819338.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W1]
 gi|242348501|gb|EES40103.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W1]
          Length = 900

 Score =  141 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 8/176 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +    + T+   +     +  P    L  I +E
Sbjct: 6   YAVVDLETTGNQLDYDEIIQIGITFVRNQQIID-TYHSMIR-TDLEIPPFIQALTSIEEE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ +  + ++    ++  ++AHN  FD+ FI       N     P +++DTL 
Sbjct: 64  MLAQAPYFNEVAEDIYNQI--KDCIFVAHNISFDLNFIKNAFDNCNIQ-FRPKKVMDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           + +   P      L+ L + + I +++   H A  D+   + + IK       +  
Sbjct: 121 LFKIAFPTDKSYQLSELAQSHNIPLTN--AHRADEDATTTAKLMIKAFEKFENLPL 174


>gi|229816213|ref|ZP_04446523.1| hypothetical protein COLINT_03263 [Collinsella intestinalis DSM
           13280]
 gi|229808221|gb|EEP44013.1| hypothetical protein COLINT_03263 [Collinsella intestinalis DSM
           13280]
          Length = 977

 Score =  141 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 21/222 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D ETTGL  ++  +IEI A  L      +R F  F+ P+G     E  KL  IT+  
Sbjct: 48  IVLDTETTGLSHRDSELIEIAAARLRGREIVDR-FDTFVKPSG-LIPEEITKLTSITNVD 105

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   PS     +   +F        +AHNA FD GFI    +++          ID+L++
Sbjct: 106 VAHAPSAVDAVASLAEFVG--GCPVVAHNAAFDRGFI----EQVPGGADVSDIWIDSLAL 159

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +R   P  + + L  + + +G        H A  D   L  V+  ++ G + +  G    
Sbjct: 160 SRIALPRLASHKLAVMAELFGCE---SVSHRANADVEALCGVWRILLCGLADLPAGLM-- 214

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
             R   +    VP        +P+F+ +  EE D     + +
Sbjct: 215 --RRLADMHPDVP-----WSYRPIFSFLAAEEPDAVFSLVDS 249


>gi|154496866|ref|ZP_02035562.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC
           29799]
 gi|150273824|gb|EDN00937.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC
           29799]
          Length = 191

 Score =  141 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 10/176 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I FD+ET   +  NDR+  IG + +++  +    +   + P  R      + L GIT 
Sbjct: 4   RYIAFDVETP--NYANDRMSAIG-ITVVEAGEIAGEYYTLVNPEQR-FDRFNIALTGITP 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + DKP+F  ++ E     +      IAHNA FD+  +   L+          R   T 
Sbjct: 60  EMVADKPTFPELWREIGPLMDSG--LLIAHNAPFDMSVLAKCLRDYGICWHPTVRYACTC 117

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            ++RR  P    + LN+L    G+ + H   H A  DS    ++ +  + GG+ + 
Sbjct: 118 QMSRRLLPQLPNHKLNTLSDYLGLELDH---HHAGSDSMACGEILLYHLRGGASVA 170


>gi|52424757|ref|YP_087894.1| ribonuclease T [Mannheimia succiniciproducens MBEL55E]
 gi|52306809|gb|AAU37309.1| DnaQ protein [Mannheimia succiniciproducens MBEL55E]
          Length = 223

 Score =  141 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 20/199 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGR 53
           + KN+ R    ++ D+ET G ++K D ++E+ A+ L          ++     + P  G 
Sbjct: 19  LLKNRFRGYYPVIIDVETAGFNAKTDALLELAAITLKMDENGLLVPDQKCHFHIKPFEGA 78

Query: 54  KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105
             +PE++K +GI  D  L+     S   +  +            Q +  +AHNA FD  F
Sbjct: 79  NINPESIKFNGIDIDNPLRGAVPESEAITGLFQMVRKGQKNAGCQRSIIVAHNATFDQSF 138

Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A   R  I ++P  P    DT S++       +  L   C+   I    +  H AL D
Sbjct: 139 VMAAADRTKIKRNPFHPFSSFDTASLSGLMF--GQTVLVKACQAAHIAFDGKQAHSALYD 196

Query: 164 SHLLSDVYIKMMVGGSQIN 182
           +   ++++  M+     + 
Sbjct: 197 TERTAELFCYMVNHLKALG 215


>gi|118580761|ref|YP_902011.1| DNA-directed DNA polymerase [Pelobacter propionicus DSM 2379]
 gi|118503471|gb|ABK99953.1| DNA-directed DNA polymerase [Pelobacter propionicus DSM 2379]
          Length = 170

 Score =  141 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            V D+ET+GL  +   R+IE+ AV L +        +  L  N     P A ++HGI  E
Sbjct: 6   AVVDVETSGLSPRGGGRVIEVAAVLLREGKVVGE-LESLLRVNC-SIHPAAARVHGIGWE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P    ++  F  F   +    +AHNA FD+GFI  EL  +       +R I TL 
Sbjct: 64  MLRHAPEPEDVWRRFLSFVGRR--PLVAHNAPFDMGFIRHELALLGLPLA--NRSICTLR 119

Query: 129 IARRKHPS-SRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKM 174
           +ARR+ P  + + L +L +   G        H AL D+ L + V++ M
Sbjct: 120 MARRRFPELASHRLEALARHLLGSIPEDCRLHRALGDARLAARVWLAM 167


>gi|322388190|ref|ZP_08061794.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus infantis ATCC 700779]
 gi|321140862|gb|EFX36363.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus infantis ATCC 700779]
          Length = 816

 Score =  141 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +     R +V D+E T   SK  +II++G V + D     + +   + P+ R       +
Sbjct: 1   MNFRNNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVEQ-YATDVNPHER-LDSHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L   P FS +  + ++    ++  ++AHN +FD   +   L     +   P 
Sbjct: 58  LTGLTDKRLAKAPEFSQVAEKIFELV--KDGIFVAHNVQFDANLLAEFLFFEGYELRTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDT+ +A+  +P   + +L  LC+  GI +     H AL D+   +++++ M
Sbjct: 115 -RIDTVELAQIFYPQLEKYNLGILCQELGIPLE--QAHSALSDAQATAELFLCM 165


>gi|223040436|ref|ZP_03610710.1| mature parasite-infected erythrocyte surface antigen [Campylobacter
           rectus RM3267]
 gi|222878286|gb|EEF13393.1| mature parasite-infected erythrocyte surface antigen [Campylobacter
           rectus RM3267]
          Length = 289

 Score =  141 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 13/184 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIET+G    + +IIEIGA++L +     + F+ F+  +         +L GIT E
Sbjct: 73  FCVVDIETSGG-INSGQIIEIGALKLQNGEIIGK-FETFV--HAPYVPENISELTGITAE 128

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK+ P+ + +  +F  F  +  + ++AHN +FD GFI A L+ +    L   R + T+ 
Sbjct: 129 HLKNAPNLAFVMEKFKVFLGQ--SVFVAHNVRFDYGFIGATLEALGYGELLNHR-LCTID 185

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +ARR   S +  L +L +  GI  +H   H AL D+   ++++   +    ++    KT 
Sbjct: 186 LARRTIASPKYGLGTLKEILGINNAH---HRALSDAIAAAEIFKYSL---QKLPSEVKTT 239

Query: 189 EDRF 192
           ED  
Sbjct: 240 EDLI 243


>gi|154174963|ref|YP_001408508.1| DNA polymerase III subunit epsilon [Campylobacter curvus 525.92]
 gi|112803051|gb|EAU00395.1| nickel transport permease component NikD [Campylobacter curvus
           525.92]
          Length = 273

 Score =  141 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 15/215 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +    + DIET+G    + +IIEIGA+++ +  +  R F+ F+            +L GI
Sbjct: 73  QQEFCIVDIETSGG-ITSGQIIEIGALKIKNGVEIGR-FESFVDAPF--VPENITQLTGI 128

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +   L   PS  S+   F  F     + ++AHN  FD GFI+  L  I    L  +R + 
Sbjct: 129 SQSDLTGAPSLKSVLERFKIFLGT--SVFVAHNVNFDYGFISQSLSNIGLGMLL-NRKLC 185

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ ++RR   S +  L SL +  GI  +H   H AL D+   +++ +K+ +  S++ F  
Sbjct: 186 TIDLSRRTIASQKYGLGSLKELLGINNTH---HRALNDAIAATEI-LKICI--SRLPFSI 239

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           ++ ED       KT P++ L        +    +E
Sbjct: 240 QSVEDLI--NFSKTAPSMKLKPEPSLQNSDAIADE 272


>gi|257897430|ref|ZP_05677083.1| DNA polymerase subunit III [Enterococcus faecium Com12]
 gi|257833995|gb|EEV60416.1| DNA polymerase subunit III [Enterococcus faecium Com12]
          Length = 291

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 6/166 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGL   +  I++IGA++     + +R +Q  + P     S    K+ G+  E
Sbjct: 124 YVVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQ-NIKPFRSNISKRITKITGLELE 182

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P+F     +   F +      +AHNA FD+ F+  +L   N +     R+IDTL 
Sbjct: 183 DVVNMPTFEDFSPQLMSFISC--YTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLP 240

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +ARR   +  + L +L     +     + H AL D  + + VY  +
Sbjct: 241 LARRHFETPNHKLITLKDYLNLDN---NSHDALEDCLVTNKVYQYI 283


>gi|333027027|ref|ZP_08455091.1| putative DNA polymerase III [Streptomyces sp. Tu6071]
 gi|332746879|gb|EGJ77320.1| putative DNA polymerase III [Streptomyces sp. Tu6071]
          Length = 611

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 11/204 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ET+GL ++ DR++ +  V +    +    F   + P      P  + +HG+T E L 
Sbjct: 23  VDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTLVDPGC---DPGPVDVHGLTRERLS 79

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P+F  I          Q+   +AHNA+FD  F+  E  R  +  L  +R + TL++ R
Sbjct: 80  GAPAFDQIAGRLGAML--QDRVLVAHNAQFDYDFLAHEFARA-RLYLPVTRRLCTLALNR 136

Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN--FGFKTN 188
           +  P +R+  L+SL   YG+  +    H AL D+ +L+ ++   +   ++++    F T 
Sbjct: 137 QVDPPTRDMKLDSLAAHYGVPRT--RAHDALDDTRVLAGIFRATLREAARLDLPLPFVTC 194

Query: 189 EDRFFKEEKKTVPNISLLKRDKPL 212
             R   +     P      R+   
Sbjct: 195 PPRQDPQFAPQPPKTPCAYRNPGR 218


>gi|90579159|ref|ZP_01234969.1| ribonuclease T [Vibrio angustum S14]
 gi|90439992|gb|EAS65173.1| ribonuclease T [Vibrio angustum S14]
          Length = 221

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 21/200 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGR 53
             K++ R    +V D+ET G ++K D ++EI AV    +   + K   T    + P  G 
Sbjct: 9   TLKSRFRGYFPVVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVSPFEGA 68

Query: 54  KNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVG 104
               EAL  +GI D F  L+   S      E +    ++        A  +AHNA FD  
Sbjct: 69  ILHKEALDFNGIRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHS 128

Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+ A  +R  + ++P  P    DT +++       +  L   C+   I   +R  H AL 
Sbjct: 129 FVMAASERAKLKRNPFHPFATFDTAALSGLAF--GQTVLAKACQTANIPFDNREAHSALY 186

Query: 163 DSHLLSDVYIKMMVGGSQIN 182
           D+   ++++ +++    ++ 
Sbjct: 187 DTERTAELFCEIVNKWKKLG 206


>gi|42524627|ref|NP_970007.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
 gi|39576837|emb|CAE78066.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
          Length = 276

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 10/177 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N+   + FD ET+G       ++E GAV+     +  R  Q    P     +   + 
Sbjct: 5   LPLNEYTYVAFDTETSGAYPVGHDVVEFGAVKWYKGEEVGR-LQFLFKP-REPMTDFIIG 62

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT+E + D P  +    E  +FF  + A  +AH+A FD+GF+  + ++     L   
Sbjct: 63  IHGITNEMVADAPLITEKIREIHEFF--KGAIVMAHHAPFDLGFMAIDFEKNQLPLLPEP 120

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV----YIKM 174
            +  +L   +  H    + L +L +   I       H A  D+     V    + KM
Sbjct: 121 ALCTSLLSRKWIHGVENHKLQTLVRHLNID--GGQAHRAYDDAKACLHVGLACFAKM 175


>gi|332291057|ref|YP_004429666.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169143|gb|AEE18398.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 458

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +  D  +    F   + P  R      + L GI + 
Sbjct: 2   YAILDIETTGGKYNEEGITEIAIYKF-DGHQVVDQFITLVNPE-RPIQAFVVGLTGINNG 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P F  I     +    +    +AHNA+FD   ++ E  R+          + ++ 
Sbjct: 60  MLTDAPKFHEIAKRIIEI--TEGCIIVAHNAQFDYRILSLEFDRLGYP--YERTTLCSVE 115

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +++   P      L  L K  GI +S+R  H A  D+     ++  ++ 
Sbjct: 116 LSQELLPGHDSYSLGKLTKTLGIAMSNR--HRADGDAIATVKLFKLLLE 162


>gi|261416331|ref|YP_003250014.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372787|gb|ACX75532.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325547|gb|ADL24748.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 215

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 17/183 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKT---NRTFQVFLCPNGRKNSPEAL 60
           + + FD+ETTGL ++ D IIEIGAV+      +          F   + PN      EA 
Sbjct: 7   KFVAFDLETTGLVNRKDEIIEIGAVKFTVEVKNGRVVPKLISEFDTLVKPN-MLIPAEAT 65

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            ++ ITD+ +++ P       +F  F     +  +AHNA FD  F+    ++ N      
Sbjct: 66  NVNHITDKMVENAPPVGEALKQFTAFCGP-GSILLAHNANFDASFLRTAYEQ-NPQFTPG 123

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRY------GITISHRSKHGALLDSHLLSDVYIK 173
           + ++D+L+I++   P  + + L  +   +       +TI     H ++ D  +L +V++ 
Sbjct: 124 NPVVDSLAISKTIMPELANHKLGFMANMFMKRGEISMTIDEEKMHRSVYDCEMLMEVFVA 183

Query: 174 MMV 176
           ++ 
Sbjct: 184 LLR 186


>gi|290962326|ref|YP_003493508.1| DNA polymerase III subunit epsilon [Streptomyces scabiei 87.22]
 gi|260651852|emb|CBG74981.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
           [Streptomyces scabiei 87.22]
          Length = 613

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 93/230 (40%), Gaps = 26/230 (11%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ET+GL    DR++ +  + L         F   L P+     P  + +HG+T + L 
Sbjct: 22  VDVETSGLRPGRDRVLSLSILTLDAQGNQTGEFSTLLNPDC---DPGPVHVHGLTADRLA 78

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P+F  I  +     + +    +AHNA+FD  F+  E  ++ +     SR + TL++ R
Sbjct: 79  GAPAFEEIAPQVGALLSSR--VLVAHNAQFDYDFLAHEFAQV-RSWAPVSRRLCTLALNR 135

Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
              P++ +  L +L   YG+       H A  D  +LS +    +    Q+         
Sbjct: 136 LVGPATPDLKLGTLAAHYGVR--QEKAHDAQDDVRVLSGILRGSLSAAEQLGLALPVLGC 193

Query: 191 RFFKEEKKTVPNISLLKRDK-------PLF----------TRITKEELDE 223
              ++ +  VP      R+        PL           TR+++EEL  
Sbjct: 194 PPRQDYRPYVPKTPCAYRNPGRMAPGGPLVQGMKVAITGDTRVSREELVA 243


>gi|266619529|ref|ZP_06112464.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
 gi|288868940|gb|EFD01239.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
          Length = 235

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGLD K D+IIEIGAV  ++  +    F+ F+ P  R    +   L GI D+
Sbjct: 5   YVAVDLETTGLDPKRDKIIEIGAVR-IEAGEITAEFESFVNP-YRMLEAKTRTLTGIRDQ 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P    +   F +F  E     + H   FD  F+      +N+        IDTL+
Sbjct: 63  DVVHAPGIEEVLPVFLNFAGE--LPLLGHRIIFDYSFLKRAA--VNQGESFSRAGIDTLT 118

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +AR   P   R +L + C  +GI    R  H A+ D+     +Y  M
Sbjct: 119 LARLFMPAEERKNLKAACGWFGID--QRETHRAMADAVAAHQLYQAM 163


>gi|228473001|ref|ZP_04057758.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275583|gb|EEK14360.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC
           33624]
          Length = 453

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 9/173 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI      D  K    F   + P  +K     ++L GI+++
Sbjct: 2   YAIIDIETTGGKMGEEAITEIAIYRF-DGQKVTDRFISLINPE-KKIDDFVVRLTGISNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +     +    ++   +AHNA FD   ++ E +R+  D       + T+ 
Sbjct: 60  TVRQAPKFYEVAKRIVEI--TEDCILVAHNASFDYRVLSLEFRRLGFDY--QRSTLCTVE 115

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +++R  P      L  L +  GI + +R  H A  D+     ++  ++   +Q
Sbjct: 116 MSQRLLPDEPSYSLGKLTRSLGIPLLNR--HRANGDAMATVHLFKLLLDRDTQ 166


>gi|284931104|gb|ADC31042.1| DNA polymerase III alpha subunit polC/Gram positive-type
           [Mycoplasma gallisepticum str. F]
          Length = 1494

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 13/184 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNR--------TFQVFLCPNG 52
           ++ +K+  ++FDIETTGL++  ++IIEI AV +  + ++TN          F+  +    
Sbjct: 403 LKLDKLSFVIFDIETTGLNAYYEQIIEIAAVRVKAELNETNHQLEFVQLGKFEKLIKNE- 461

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQ 111
           +  S    +L G+ D  LKD     ++  EF +F  +++   +AHN   FD  +IN +L 
Sbjct: 462 KPLSKFTTQLTGLKDSDLKDAQDEKTVLEEFANFI-QKDDVLVAHNGIDFDFIWINTKLD 520

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +    PLD + ++D+L +A + +   R  L +L  + G        H A  D+ LL+   
Sbjct: 521 KYKLKPLD-NPMLDSLRLAYQLYQFKRYTLENLSLKLGYEYDKTLAHRANYDTELLAKCL 579

Query: 172 IKMM 175
           + M+
Sbjct: 580 MIML 583


>gi|269796817|ref|YP_003316272.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
 gi|269099002|gb|ACZ23438.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
          Length = 611

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 9/203 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+GL   + R++++   ++       R++   L P      P  + +HG+T E
Sbjct: 22  YAVVDVETSGLSPTHHRVLQVAVTQVEPDGALGRSWSSLLDPG---VDPGPVHVHGLTRE 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P +  +     +   ++    +AHNA+FD GF+ AE  R  + PL   R + TL+
Sbjct: 79  RLAGAPQYQDVAGTLDELVRDR--VLVAHNARFDWGFLAAESDRA-RAPLSVDRRLCTLA 135

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++RR   P S   L ++   +G+    R  H A  D  +L +V    +    ++      
Sbjct: 136 LSRRLDLPVSDLRLATVAAHWGVQ--QRRAHDAEDDVRVLVEVLRHSLAAADRLGMTLPV 193

Query: 188 NEDRFFKEEKKTVPNISLLKRDK 210
                 +   +    +      +
Sbjct: 194 AACGPGEPSARDGGPVRPSPSPR 216


>gi|254786953|ref|YP_003074382.1| ribonuclease T [Teredinibacter turnerae T7901]
 gi|237685615|gb|ACR12879.1| ribonuclease T [Teredinibacter turnerae T7901]
          Length = 211

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVE--LLDYS--KTNRTFQVFLCP-NGRKNSP 57
           R      ++ D+ET G ++  D ++EI AV   + D    + + TF   + P  G     
Sbjct: 14  RFRGFLPVIIDVETGGFNAATDALLEIAAVTLHMDDNGFLQRDETFSFHVEPFEGANIEK 73

Query: 58  EALKLHGIT-----DEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
            AL+  GI       E + +  +   IF+                + HNA FD+ F+NA 
Sbjct: 74  AALEFTGIDLESEDREAVPEAIALGDIFAGVRKAVKGYGCNRAVLVGHNAHFDLNFLNAA 133

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             R  I ++P  P    DT ++           L + CK  G+  S+R  H A  D+   
Sbjct: 134 AARSDIKRNPFHPFSCFDTATLCGLIF--GHTVLATSCKLAGLEFSNREAHSAAYDAEKT 191

Query: 168 SDVYIKMMVGGSQIN 182
           +D++  M+     + 
Sbjct: 192 ADLFCLMVNKWKALG 206


>gi|163754237|ref|ZP_02161360.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
 gi|161326451|gb|EDP97777.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
          Length = 457

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 12/172 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + D+ETTG   ++++I EI  +   D       F   + PN          L GI + 
Sbjct: 7   YTIIDVETTG---RSNKITEIS-IFKFDGETIVDEFTSLVNPN-VLIPTHITALTGIDNA 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F+ I  E       +++ ++AHN  FD   I  E + I+ D     + + T+ 
Sbjct: 62  MVADAPTFAEIAKEVLSI--TKDSIFVAHNVNFDYNVIRNEFKAIDLDF--RRKKLCTVR 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           ++R   P      L  LCK   I IS R  H A  D+     ++  ++   +
Sbjct: 118 LSRALIPGFKSYSLGKLCKSLNIHISDR--HRARGDAAATVILFQLLLTKDA 167


>gi|169830753|ref|YP_001716735.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637597|gb|ACA59103.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 921

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 13/192 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGLD + D I+E+G V + D  K    F   + P+ R        L G+ D 
Sbjct: 5   FVVLDLETTGLDPQADEIVEVGLVRVEDG-KPGAVFHALVRPS-RPLPARIKSLTGLDDA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L ++P +S +      F   +    + H+  FD+ F+              ++  DT+ 
Sbjct: 63  DLAERPDWSEVRPAVTAFLGNE--PVVGHHVHFDLAFLERHA------GYRATQAYDTVD 114

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR   P      L  LC    + +  R  H A+ D+   + ++  ++    ++ F  + 
Sbjct: 115 LARLVLPGLPSYRLELLCAH--LDLPERPGHRAMEDARAAAGLFTALLERFCRLEFTTQA 172

Query: 188 NEDRFFKEEKKT 199
              R   +   +
Sbjct: 173 TVHRILSQTPGS 184


>gi|91785922|ref|YP_546874.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666]
 gi|91695147|gb|ABE41976.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666]
          Length = 203

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 10/168 (5%)

Query: 7   MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+ I V D ETTGL     DR  E+  V L++  +    FQ  +   G +       L G
Sbjct: 1   MKPIAVIDFETTGLSPAMGDRATEVAIV-LVEGGRVVDRFQSLMN-AGVRIPAFITSLTG 58

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+  +   P  +++ ++   F    NA  +AHNA FD  F  AEL R  +    P    
Sbjct: 59  ITNAMVASAPDAATVMTDANRFVG--NAPLVAHNASFDRKFWEAELSRAGERASQPFA-- 114

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            T+ ++RR +P    + L  L   + +  + R  H AL D+ + + + 
Sbjct: 115 CTMLVSRRLYPQAPSHKLGVLVDYHHLPKAGR-AHRALADAEMAASLL 161


>gi|294660232|ref|NP_852876.2| DNA polymerase III subunit alpha polC/Gram positive-type
           [Mycoplasma gallisepticum str. R(low)]
 gi|284811887|gb|AAP56444.2| DNA polymerase III alpha subunit polC/Gram positive-type
           [Mycoplasma gallisepticum str. R(low)]
 gi|284930337|gb|ADC30276.1| DNA polymerase III alpha subunit polC/Gram positive-type
           [Mycoplasma gallisepticum str. R(high)]
          Length = 1494

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 13/184 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT---------FQVFLCPNG 52
           ++ +++  ++FDIETTGL++  ++IIEI AV +                  F+  +  N 
Sbjct: 403 LKLDQLSFVIFDIETTGLNAYYEQIIEIAAVRVKAELNVTNHQLEFVQIGKFEKLIK-NK 461

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQ 111
           +  S    +L G+ D  LKD     ++  EF +F  +++   +AHN   FD  +IN +L 
Sbjct: 462 KPLSKFTTQLTGLKDSDLKDAQDEKTVLEEFVNFI-QKDDVLVAHNGIDFDFIWINTKLD 520

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +    PLD + ++D+L +A + +   R  L +L  + G        H A  D+ LL+   
Sbjct: 521 KYKLKPLD-NPMLDSLRLAYQLYQFKRYTLENLSLKLGYEYDKTLAHRANYDTELLAKCL 579

Query: 172 IKMM 175
           + M+
Sbjct: 580 MIML 583


>gi|238753629|ref|ZP_04614991.1| Ribonuclease T [Yersinia ruckeri ATCC 29473]
 gi|238708181|gb|EEQ00537.1| Ribonuclease T [Yersinia ruckeri ATCC 29473]
          Length = 217

 Score =  141 bits (356), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G ++K D ++EI AV L      + + + T    + P  G    PEAL  +
Sbjct: 19  PVVIDVETAGFNAKTDALLEIAAVTLKMDENGWLQRDETLHFHVEPFEGANLQPEALAFN 78

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113
           GI         + +  +  +IF        ++       +AHNA FD  F+    +R  +
Sbjct: 79  GIDPSNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFVMEAAERACL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C   GI       H AL D+   ++++ +
Sbjct: 139 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLTAGIPFDSTQAHSALYDTEQTAELFCE 196

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 197 LVNRWKRLG 205


>gi|291527626|emb|CBK93212.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium rectale M104/1]
          Length = 260

 Score =  141 bits (356), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 9/173 (5%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N     V D+E TGL +KND+IIEIGA  +    +   T    + P          +L G
Sbjct: 21  NIKNYTVIDLEMTGLSAKNDKIIEIGAARVR-GGEIVDTISTLVNPKQH-IPQRVQELTG 78

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD  +++            DF  +     +  N  FD  F+        +     +   
Sbjct: 79  ITDSDVENAADMDVAVDNLLDFIGDD--IILGQNVTFDYSFLKQWAVNHKRTLSLNA--Y 134

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           DTL IAR+  P+ ++  L  LC+ +   +S  + H AL D+     ++ K++ 
Sbjct: 135 DTLKIARKCLPAEQSKKLEDLCEYF--DVSRENAHRALDDAIETKQIFEKLLA 185


>gi|256390076|ref|YP_003111640.1| exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
 gi|256356302|gb|ACU69799.1| Exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
          Length = 204

 Score =  141 bits (356), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 7/163 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G       I+E+  V +    +   ++   L P G      A ++HGIT E
Sbjct: 12  YAVVDVETSGFQPPIAEILEVAIVHVDATGQVTGSWDSLLRPQGGV---GATRVHGITRE 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +  E      ++    +AHN  FD  F+  +  R+     + +    TL 
Sbjct: 69  MVEPAPRFEDVGMELHGLLVDR--VVVAHNLAFDAKFLVTQFARLGVHSPEIAGGACTLR 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            ++   P     L   C+  G+ ++    H AL D+   + + 
Sbjct: 127 TSQAMLPGPSYKLLDCCEAVGVELTD--AHSALGDALATARLL 167


>gi|225012865|ref|ZP_03703298.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium
           MS024-2A]
 gi|225002987|gb|EEG40964.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium
           MS024-2A]
          Length = 458

 Score =  141 bits (356), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 9/160 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +  +  K    F   + P  ++  P   KL GI  +
Sbjct: 2   YAILDIETTGGKYDEEGITEIAIYKY-NGQKVVDQFSSLINPQ-KEIQPFVEKLTGINSK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  +     +    ++   +AHNA FD   +  E +R+        + I T+ 
Sbjct: 60  MLRSAPKFYEVAKRIVEL--TEDCILVAHNASFDYRILQTEFRRLGFPF--ERKSICTVE 115

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLL 167
           ++++  P      L  L +  GI  S +  H A  D+ + 
Sbjct: 116 LSQKLLPDEPAYSLGKLVRSLGIPFSDQ--HRAHGDAKVT 153


>gi|224541223|ref|ZP_03681762.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525868|gb|EEF94973.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM
           15897]
          Length = 212

 Score =  141 bits (356), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 79/183 (43%), Gaps = 21/183 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-------------NGRKN 55
            IV DIE TGL+ + +R+IE+ A++ +++ +  R F   + P                  
Sbjct: 15  YIVVDIEATGLNPETERLIEVAAIKYINHKEVAR-FSELINPLRDQLPVDLLDKDKTIYI 73

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           S     L GI++  L D      +  E+  F    N   I HN +FD+ FI   L R + 
Sbjct: 74  SDFIENLTGISNRMLHDARGEKDVLREYIKFIG--NDVIIGHNVRFDIRFIYDALLR-DY 130

Query: 116 DPLDPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L  +  IDTL IAR+       R  L  L   Y I  SH   H A+ D  +  DVY  
Sbjct: 131 GVLFQNDYIDTLKIARKLLHEDLKRYRLKDLADHYHIDYSH--AHRAVNDCEITHDVYEM 188

Query: 174 MMV 176
           MM 
Sbjct: 189 MME 191


>gi|90410853|ref|ZP_01218868.1| ribonuclease T [Photobacterium profundum 3TCK]
 gi|90328484|gb|EAS44782.1| ribonuclease T [Photobacterium profundum 3TCK]
          Length = 223

 Score =  141 bits (356), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 21/200 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGR 53
             K++ R    +V D+ET G +SK D ++EI AV    +   + K   T    + P  G 
Sbjct: 9   TLKSRFRGYFPVVIDVETAGFNSKTDALLEICAVTLQMDEDGWLKPASTIHFHVAPFEGA 68

Query: 54  KNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVG 104
               EAL+ +GI D F  L+   S  +   E +    ++        A  +AHNA FD  
Sbjct: 69  VLHKEALEFNGIRDPFSPLRGAVSEETALKEIYKQIRKEQKAADCSRAIMVAHNANFDHS 128

Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+    +R  + ++P  P    DT +++       +  L   CK  G+   ++  H AL 
Sbjct: 129 FVMEASERARLKRNPFHPFATFDTAALSGLAF--GQTVLAKACKTAGVAFDNKEAHSALY 186

Query: 163 DSHLLSDVYIKMMVGGSQIN 182
           D+   ++++ +++    ++ 
Sbjct: 187 DTERTAELFCEIVNKWKKLG 206


>gi|315127223|ref|YP_004069226.1| ribonuclease T [Pseudoalteromonas sp. SM9913]
 gi|315015737|gb|ADT69075.1| ribonuclease T [Pseudoalteromonas sp. SM9913]
          Length = 224

 Score =  141 bits (356), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA-VELLDYSK---TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G + + D ++EI A V  +D       + T    + P  G      A++ +
Sbjct: 18  PVVIDVETAGFNKETDALLEIAASVLKMDDEGLLSIDHTVHFHVQPFEGANIEQAAIEFN 77

Query: 64  GITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI     L+          E              Q +  +AHNA FD GF+NA ++R  I
Sbjct: 78  GIEPFSALRGAVPEEEAIKEICKVVRKAQKAAGCQRSVVVAHNAAFDHGFLNAAIERNNI 137

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT S+A       +  L   C+  GI   ++  H AL D+   +++Y  
Sbjct: 138 KRTPFHPFVSFDTTSLAGLAL--GQTVLAKACRAAGIEFDNKQAHSALYDTERTAELYCL 195

Query: 174 MMVGGSQIN 182
           ++    Q+ 
Sbjct: 196 IVNRWQQLG 204


>gi|213962688|ref|ZP_03390949.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena
           Capno]
 gi|213954683|gb|EEB66004.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena
           Capno]
          Length = 442

 Score =  141 bits (356), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +   ++ T++ F   + P  R       KL GI ++
Sbjct: 2   YAILDIETTGGKYDEEGITEIAIYQFDGHTITDQ-FISLINPE-RPIQDYVTKLTGINNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P F  I     +    +    + HNA FD   +  E +R+  + +  +  + T+ 
Sbjct: 60  MLRNAPKFYEIAKRIVEI--TEGCIIVGHNAAFDYRILQTEFRRLGYEYIKTT--LCTVE 115

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++++  P      L  L +  GI +S R  H A  D+    +++  ++ 
Sbjct: 116 LSQQLIPDKESYSLGKLVRSLGIPMSER--HRASGDAMATLNLFKYLLE 162


>gi|307706367|ref|ZP_07643179.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK321]
 gi|307618285|gb|EFN97440.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK321]
          Length = 816

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLVQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMAQLPKGL 176


>gi|282890349|ref|ZP_06298877.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499731|gb|EFB42022.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 249

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 85/234 (36%), Gaps = 15/234 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    K   +  D ETTGLD   DRIIE+ AV    + +    F+  + P        ++
Sbjct: 1   MSLLEKATFVCIDCETTGLDVHADRIIEV-AVARFTFDQILEQFESLINPEC-PIPESSI 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LD 119
           ++H IT E + DKP  + +  +  D         + H   FD+  I    +R      + 
Sbjct: 59  QIHHITAEMVADKPPITQVIPQILDAVRSH--TIVGHGVLFDIELIAVAAERAGIPCSIR 116

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +  +DTL +AR    S  N L  L   + I       H A+ D  +  +V+  +     
Sbjct: 117 QNPYLDTLRLARLYGESPINSLEQLRMHFNIQFEG--AHRAMSDVLVNIEVFKHLAKRYK 174

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL--DEHDKTIQTL 231
             +  F+             +  + L K        I  + L    H    Q L
Sbjct: 175 TTDNLFQILSKPIL------LRCMPLGKHKGRSLKEIPLDYLKWAAHKNFDQDL 222


>gi|261253571|ref|ZP_05946144.1| ribonuclease T [Vibrio orientalis CIP 102891]
 gi|260936962|gb|EEX92951.1| ribonuclease T [Vibrio orientalis CIP 102891]
          Length = 218

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G ++K D ++EI AV L      +     T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVIDVETAGFNAKTDALLEICAVTLKMDENGDLAPASTIHFHVEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                EAL+ +GI D F  L+   + +    E +    ++        A  +AHNA FD 
Sbjct: 68  ANLEKEALEFNGIRDPFSPLRGAVTEAEALKEIYKLVRKEQKAADCSRAIMVAHNATFDH 127

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+    +R      P  P    DT +++   +   +  L   CK  G+   ++  H AL
Sbjct: 128 SFVMEASERCKLKRVPFHPFATFDTAALSGLAY--GQTVLAKACKTAGMDFDNKEAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 186 YDTQKTAELFCGIVNKWKALG 206


>gi|315103201|gb|EFT75177.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA2]
          Length = 658

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 88  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-SIPASVQVLT 144

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD  ++  PS +++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 145 GITDVMVRSAPSLNAVLPSWSEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWDDPA-V 201

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 202 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 257

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 258 GNLGVTTLEDLL 269


>gi|268611881|ref|ZP_06145608.1| hypothetical protein RflaF_20541 [Ruminococcus flavefaciens FD-1]
          Length = 176

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 9/174 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ET   +  NDR+  IG   + D       F   + P    +S    +L GI  E
Sbjct: 4   YIVFDVETP--NHANDRMSAIGITAVKDNKIVANYFS-LVDPETHFDS-FNTQLTGIDAE 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P+F+ ++ +     ++     +AHNA FD+  + + L+         +  + T+ 
Sbjct: 60  KVKDAPNFAELWKKIEPIMSKG--ILVAHNAVFDMSVLRSCLRSYGITWKPTAEYLCTVQ 117

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           I RR  P+ +++LN +C  YGI + H   H A  D+H  +++ ++ M  G  ++
Sbjct: 118 IGRRVLPNMKHNLNVMCDHYGIALDH---HQADSDAHACAEILLRYMESGVDVS 168


>gi|262393711|ref|YP_003285565.1| ribonuclease T [Vibrio sp. Ex25]
 gi|262337305|gb|ACY51100.1| ribonuclease T [Vibrio sp. Ex25]
          Length = 214

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L            T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVVDVETAGFNAQTDALLEICAVTLKMDEDGVLHPASTIHFHVEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                EAL+ +GI D +  L+   S      E +    ++        A  +AHNA FD+
Sbjct: 68  ANLEKEALEFNGIRDPYSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDL 127

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           GF+NA  +R      P  P    DT +++   +   +  L   CK  G+   +R  H AL
Sbjct: 128 GFVNAANERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 186 YDTQKTAELFCGIVNKWKALG 206


>gi|238917782|ref|YP_002931299.1| DNA polymerase [Eubacterium eligens ATCC 27750]
 gi|238873142|gb|ACR72852.1| DNA polymerase [Eubacterium eligens ATCC 27750]
          Length = 233

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 75/168 (44%), Gaps = 9/168 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  DIETTGL+   DRIIE+G   + D   T + +   + P G   S    +L GI +
Sbjct: 4   RYVALDIETTGLNPAVDRIIEVGMARVEDGQIT-QKYSTLVYP-GISVSERITELTGIHN 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L  KP    I  E  +F    +   + HN  FD  F+      +N         IDTL
Sbjct: 62  EELTGKPRIEDIIGEITEFIG--DWPVLGHNVIFDFSFLKKAA--VNNGLTINDDGIDTL 117

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +ARR  P   +  L+ LC+ + I       H A  D+   S +Y K+
Sbjct: 118 KLARRILPEVEHKSLSFLCQYFNIDP--GRSHRAYDDAVSASLLYAKL 163


>gi|329946892|ref|ZP_08294304.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328526703|gb|EGF53716.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 552

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 12/211 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
               +   +V D+ETTG       + EIGAV+          F   + P G     +   
Sbjct: 15  TPLKRATFVVVDLETTGGAPGAQALTEIGAVKARGGQVLTDFF-TLVNP-GVAIPAQITM 72

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           L GIT+  +   P   +    F D+      +   +AHNA+FDVG +      +  +  +
Sbjct: 73  LTGITNAMVAGAPGVRTCVEAFLDWADLLAGDVVLVAHNARFDVGHLRGAAAALGLEWPE 132

Query: 120 PSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P R++DTL++AR+         + L +L    G     R  H AL D+    DV    + 
Sbjct: 133 P-RVLDTLALARKAWTRSEVPNHKLGTLAAFVG--SQTRPTHRALDDACATVDVLHAALE 189

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207
             + +  G    ED     +   V   +  +
Sbjct: 190 VMAPL--GVTHLEDLATASDPVPVRRRAKSR 218


>gi|329119491|ref|ZP_08248176.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464424|gb|EGF10724.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 484

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 10/179 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            + D+ETTG     DRI EI  +     + T   +   + P  R   P   +L GI DE 
Sbjct: 44  AIVDLETTGGSFDTDRITEIAFLRFDGGTVT--PYHSLVHPE-RPIPPFIRRLTGIGDET 100

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P FS++  E       +    +AHN+KFD  F+     R       P+  + T+ +
Sbjct: 101 VAGAPPFSALAHELLPLL--RGCILLAHNSKFDYTFLRRAFARCGLPFAAPT--LCTVQL 156

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +RR +P   ++ L S+ +R+GI  + R  H A  D   ++D     +       F    
Sbjct: 157 SRRLYPQFYKHSLESIIERHGIAAASR--HRATDDVLAVADYLETALREQGSETFAAHA 213


>gi|319649890|ref|ZP_08004041.1| hypothetical protein HMPREF1013_00645 [Bacillus sp. 2_A_57_CT2]
 gi|317398470|gb|EFV79157.1| hypothetical protein HMPREF1013_00645 [Bacillus sp. 2_A_57_CT2]
          Length = 242

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 8/183 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           I    +   VFDIETTG    K D+II IGAV+++    +  +F        +  S E  
Sbjct: 51  IPFGNLNVAVFDIETTGFYPDKGDQIISIGAVKIIKGKVSEDSFYSLARFE-KPLSNEIK 109

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+++  L+  P  S +   F +F   ++   +AH+A  +  F+     ++ + P   
Sbjct: 110 ELTGLSEADLEKAPPLSEVLISFLEFV--KDMPLVAHHANHEKSFMQHSCWKLFRTPF-K 166

Query: 121 SRIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            RI+DT  + R   H  S   L  LC+ Y I +  R  H AL D+ L + ++ +++    
Sbjct: 167 YRILDTSFLYRIADHNKSFWRLEDLCEFYSIPVKDR--HHALGDAKLTALLWCRLIEEVH 224

Query: 180 QIN 182
           ++ 
Sbjct: 225 KLG 227


>gi|319939450|ref|ZP_08013810.1| DNA polymerase III [Streptococcus anginosus 1_2_62CV]
 gi|319811436|gb|EFW07731.1| DNA polymerase III [Streptococcus anginosus 1_2_62CV]
          Length = 819

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 92/174 (52%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + + K +  V D+E T   S N +II++G V L++  +  +T++  + P+  K      +
Sbjct: 1   MTQEKRKYAVVDLEATSASS-NAKIIQVGIV-LIENGQIVKTYETDVNPH-EKLDSHICQ 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ L+  P FS +  E ++    ++A ++AHN KFD   +   L     + + P 
Sbjct: 58  LTGLTDKRLRRAPDFSQVAREIYELI--EDAIFVAHNVKFDANLLAEALFWEGFELVTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ +A+   P+  + +L  LC++  I + H   H AL D+   + +++K+
Sbjct: 115 -RVDTVELAQVFFPTFEKYNLGILCEQLDIPLKH--AHTALADASATATLFLKI 165


>gi|315224304|ref|ZP_07866138.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga
           ochracea F0287]
 gi|314945694|gb|EFS97709.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga
           ochracea F0287]
          Length = 442

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I +I A+   +  +    F   + P  R       KL GI ++
Sbjct: 2   YAILDIETTGGKYNEEGITDI-AIYQFNGHEITDQFISLINPE-RPIQEFVTKLTGINNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P F  +     +     +   + HNA FD   +  E +R+  D +  +  + T+ 
Sbjct: 60  MLRNAPKFYEVAKRIVEI--TTDCIIVGHNAAFDYRILQTEFRRLGYDFVRTT--LCTVE 115

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++ R  P+     L  L +  GI +S R  H A  D+     ++  ++ 
Sbjct: 116 LSERLIPNKESYSLGKLVRSLGIPVSDR--HRASGDALATLKLFKYLLE 162


>gi|237750780|ref|ZP_04581260.1| DNA polymerase III subunit epsilon [Helicobacter bilis ATCC 43879]
 gi|229373225|gb|EEO23616.1| DNA polymerase III subunit epsilon [Helicobacter bilis ATCC 43879]
          Length = 268

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 8/170 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  N+ +    DIETT    KN +IIEIGA+   +  +   TF   +         + + 
Sbjct: 73  INLNEAKLCFVDIETTSASVKNGQIIEIGAIIAQNG-EILDTFDTLV--YSPFVPEDIID 129

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GI    L+D P    +  +F  F    ++ ++AHN  FD  FI   L   +  PL   
Sbjct: 130 LTGIDSYMLEDAPRLEQVLKQFRAFLG--DSVFVAHNVSFDYNFIAESLHEYDMPPLFNP 187

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           R + TL ++RR   S +  L  L    GI  +    H A  D+     +Y
Sbjct: 188 R-LCTLDLSRRTIVSKKYALAYLNDMLGINTA--QAHRAYADALTAFRLY 234


>gi|312867475|ref|ZP_07727684.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           parasanguinis F0405]
 gi|311097176|gb|EFQ55411.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           parasanguinis F0405]
          Length = 817

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 91/187 (48%), Gaps = 14/187 (7%)

Query: 2   IRKNKMRKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           + + K +  + D+E T  G ++K   II++G V + D   T ++++  + P+ R      
Sbjct: 1   MTRQKRKYAIVDLEATSAGSNAK---IIQVGIVIVEDGVIT-QSYETDVNPHER-LDEHI 55

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L G+TD  L+  P F+ +  E ++    ++A ++AHN KFD   +   L     +   
Sbjct: 56  KQLTGLTDARLRKAPEFAQVAKEIFELI--EDAVFVAHNVKFDANLLAEALFWEGFELTT 113

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           P   IDT+ +++  +P+  R +L +L     I + H   H AL D+   + + +K+    
Sbjct: 114 P--RIDTVELSQIFYPTLERYNLGALAAELQIELHH--AHSALADAMATAQLLLKVREKI 169

Query: 179 SQINFGF 185
           + +  G 
Sbjct: 170 ASLPRGL 176


>gi|219849043|ref|YP_002463476.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM
           9485]
 gi|219543302|gb|ACL25040.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM
           9485]
          Length = 934

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 15/205 (7%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N    +  D+ETTGL S  D IIE+ AV        +R F+  + P  +    +  +L 
Sbjct: 1   MNNRIYVAIDVETTGLQSGLDEIIEVAAVTFRGRDILDR-FERLVRP-RQSVPLKITRLT 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI    L   P F+ I ++   F   +    + H+  FD+  + A+    N        I
Sbjct: 59  GIDPAALAQAPRFNEIGADLARFIGNR--PIVGHSIGFDLMMLRAQGMNFN------QPI 110

Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            DT  +A    P +    L++L  R GI   H   H AL D+ + + ++   ++    + 
Sbjct: 111 YDTFELATLLLPQATSYKLSALAARLGIP--HPDAHRALNDAEVAAQLFA--VLSERMLQ 166

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLK 207
               T  +      K  +P   L +
Sbjct: 167 LDLATLGEMVRLMSKIGLPLRDLFE 191


>gi|218461621|ref|ZP_03501712.1| DNA polymerase III subunit epsilon [Rhizobium etli Kim 5]
          Length = 115

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/116 (53%), Positives = 82/116 (70%), Gaps = 2/116 (1%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1   MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           DEFLKDK +F+ +  E   FF   +A+WIAHNA FD+GFINAE  RI   P+ P R
Sbjct: 61  DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPER 114


>gi|166240304|ref|XP_001733024.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4]
 gi|165988531|gb|EDR41046.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4]
          Length = 483

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 5/176 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R I FD+ET+G+ S +D IIEIGAVEL+D  +T   FQ +  P   +  P + +
Sbjct: 294 IPIKKGRVICFDLETSGVTS-SDTIIEIGAVELIDGCRTGVIFQSYAQPK-AQIHPVSEQ 351

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H +T   L   P    I + F D+    N+  +AHN  FD   +  EL R N       
Sbjct: 352 IHQLTSLQLMSAPPIEIILASFMDWVG--NSPLVAHNLAFDKRILIQELIRYNIPFNIDH 409

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMMV 176
               T+   ++ +      L+S+ ++  I  +  R  HGAL+DS +L+ +Y  +++
Sbjct: 410 ICFCTMKYFKKIYNGLNYSLDSISQKLKINKLLLRKTHGALIDSEILAIIYTHLLI 465


>gi|221140978|ref|ZP_03565471.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|302751286|gb|ADL65463.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus str. JKD6008]
          Length = 897

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +    + T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQY-RPKKVIDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I +   P      L+ L + +GIT+++   H A  D+   + + I
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163


>gi|169832144|ref|YP_001718126.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638988|gb|ACA60494.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 247

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 9/170 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEA 59
           +  +K+R +V D ETTG +    D +I +GAV + +   +  + F   + P GR   P  
Sbjct: 48  MPLSKLRFVVLDTETTGFEPAGGDEVIALGAVVVKNGRPRPEQVFHRLVNP-GRSIPPLV 106

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             L GI+DE +  +    ++   F +F          H+  FD+ F+N  L+  +   + 
Sbjct: 107 TALTGISDEAVAGEDDLVAVLPCFLEFLGNDC--LAGHHLGFDLEFLNLRLREFSGAAI- 163

Query: 120 PSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168
            +  +DT  IAR  +P+ +   L+++   +GI  + R  H AL D+ L +
Sbjct: 164 RNPALDTAVIARALYPALKYFSLDAMLSFHGIEPAGR--HTALGDAWLTA 211


>gi|50842208|ref|YP_055435.1| hypothetical protein PPA0720 [Propionibacterium acnes KPA171202]
 gi|50839810|gb|AAT82477.1| DNA polymerase III epsilon subunit (3'-5' exonuclease)
           [Propionibacterium acnes KPA171202]
 gi|314923288|gb|EFS87119.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL001PA1]
 gi|315107037|gb|EFT79013.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA1]
          Length = 633

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 63  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-SIPASVQVLT 119

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD  ++  PS +++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 120 GITDVMVRSAPSLNAVLPSWSEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWDDPA-V 176

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 177 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 232

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 233 GNLGVTTLEDLL 244


>gi|240144403|ref|ZP_04743004.1| putative DNA polymerase III, alpha chain [Roseburia intestinalis
           L1-82]
 gi|257203586|gb|EEV01871.1| putative DNA polymerase III, alpha chain [Roseburia intestinalis
           L1-82]
          Length = 235

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 9/200 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+E TGL++K D I+E+GAV + ++   ++     +     K   +  +L GIT+ 
Sbjct: 4   YVVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDKFGA--ILCQNVKIPEKVTELTGITEA 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++          +F++F  E     +  N  FD GF+       N         +DTL 
Sbjct: 62  MVQGGMEKEEAMRQFFEFIGED--IIVGQNVIFDYGFLKQWAVNHNMPL--ERSAVDTLK 117

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR+  P   + DL SLC  +G+   +   H A  D++    +Y  +     + + G   
Sbjct: 118 LARKFLPKEQKKDLESLCAYFGVKREN--AHRAFDDAYETWQIYEALRERYEEESAGDFM 175

Query: 188 NEDRFFKEEKKTVPNISLLK 207
            +   +K +K+T      +K
Sbjct: 176 PKPLLYKAKKQTPATARQIK 195


>gi|270261613|ref|ZP_06189886.1| ribonuclease T [Serratia odorifera 4Rx13]
 gi|270045097|gb|EFA18188.1| ribonuclease T [Serratia odorifera 4Rx13]
          Length = 226

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 22/202 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V DIET G ++K D ++EI AV    +   + + + T    + P  G    P
Sbjct: 24  RFRGFYPVVIDIETAGFNAKTDALLEIAAVTLKMDEEGWLQQDETLHFHVEPFEGANLQP 83

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        ++       +AHNA FD  F+ A 
Sbjct: 84  EALAFNGIDPHNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFLMAA 143

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L   C    I       H AL D+   
Sbjct: 144 AERASLKRNPFHPFATFDTAALSGLVL--GQTVLAKACIAADIPFDSTQAHSALYDTEQT 201

Query: 168 SDVYIKMM-----VGGSQINFG 184
           + ++ +++     +GG  +  G
Sbjct: 202 AQLFCELVNRWKRLGGWPLAIG 223


>gi|307545334|ref|YP_003897813.1| ribonuclease T [Halomonas elongata DSM 2581]
 gi|307217358|emb|CBV42628.1| ribonuclease T [Halomonas elongata DSM 2581]
          Length = 221

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 24/210 (11%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D I+EI AV    +       + T+   + P  G     
Sbjct: 13  RFRSFLPVVVDLETGGFNAKGDAILEIAAVTLTMDPEGNLMPDATYAYHVTPFEGANVEQ 72

Query: 58  EALKLHGITDEF-------LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107
            AL   GI  +        + +  +   IF                 + HNA FD GF+N
Sbjct: 73  SALDFTGIRLDDPLRRQVAVSEAEALGEIFRPVRKAIKAHGCTRAILVGHNAAFDHGFLN 132

Query: 108 AELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A ++R    ++P  P    DT S+A   +   +  L   C+  GI   + + H A  D+ 
Sbjct: 133 AAVERCAIKRNPFHPFSSFDTASLAGLIY--GQTVLARACRAAGIEFDNGAAHSARYDTE 190

Query: 166 LLSDVYIKMM-----VGGSQINFGFKTNED 190
             ++++  M+     +GG ++    +  E+
Sbjct: 191 RTAELFCAMINRYKDLGGWRLAQREQGVEE 220


>gi|302333066|gb|ADL23259.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 897

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +    + T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQY-RPKKVIDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I +   P      L+ L + +GIT+++   H A  D+   + + I
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163


>gi|291540867|emb|CBL13978.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis XB6B4]
          Length = 235

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 9/200 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+E TGL++K D I+E+GAV + ++   ++     +     K   +  +L GIT+ 
Sbjct: 4   YVVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDKFGA--ILCQNVKIPEKVTELTGITEA 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++          +F++F  E     +  N  FD GF+       N      +  +DTL 
Sbjct: 62  MVQGGMEKEEAMRQFFEFIGED--IIVGQNVIFDYGFLKQWAVNHNMPLERNA--VDTLK 117

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR+  P   + DL SLC  +G+   +   H A  D++    VY  +     + + G   
Sbjct: 118 LARKFLPKEQKKDLESLCACFGVKREN--AHRAFDDAYETWQVYEALRERYEEESAGDFM 175

Query: 188 NEDRFFKEEKKTVPNISLLK 207
            +   +K +K+T   +  +K
Sbjct: 176 PKPLLYKAKKQTPATVRQIK 195


>gi|282916722|ref|ZP_06324480.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus D139]
 gi|282319209|gb|EFB49561.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus D139]
 gi|298694746|gb|ADI97968.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED133]
 gi|323439542|gb|EGA97263.1| ATP-dependent DNA helicase [Staphylococcus aureus O11]
          Length = 897

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +    + T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQY-RPKKVIDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I +   P      L+ L + +GIT+++   H A  D+   + + I
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163


>gi|21283074|ref|NP_646162.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486295|ref|YP_043516.1| hypothetical protein SAS1398 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253732097|ref|ZP_04866262.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253733298|ref|ZP_04867463.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|297207885|ref|ZP_06924318.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911970|ref|ZP_07129413.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|81827855|sp|Q6G9A7|DING_STAAS RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81847815|sp|Q8NWP2|DING_STAAW RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|21204514|dbj|BAB95210.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244738|emb|CAG43174.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253724144|gb|EES92873.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253728838|gb|EES97567.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|296887459|gb|EFH26359.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300886216|gb|EFK81418.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus TCH70]
          Length = 897

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +    + T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQY-RPKKVIDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I +   P      L+ L + +GIT+++   H A  D+   + + I
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163


>gi|15924445|ref|NP_371979.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927036|ref|NP_374569.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus N315]
 gi|57650410|ref|YP_186339.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus COL]
 gi|87161026|ref|YP_494043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88195189|ref|YP_499990.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|148267941|ref|YP_001246884.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394004|ref|YP_001316679.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151221578|ref|YP_001332400.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509623|ref|YP_001575282.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253315964|ref|ZP_04839177.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|255006242|ref|ZP_05144843.2| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257795489|ref|ZP_05644468.1| DnaQ family protein [Staphylococcus aureus A9781]
 gi|258413298|ref|ZP_05681574.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9763]
 gi|258420595|ref|ZP_05683537.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9719]
 gi|258426791|ref|ZP_05688011.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9299]
 gi|258444789|ref|ZP_05693118.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8115]
 gi|258447377|ref|ZP_05695521.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6300]
 gi|258449738|ref|ZP_05697839.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6224]
 gi|258451113|ref|ZP_05699148.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5948]
 gi|258454593|ref|ZP_05702557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5937]
 gi|269203080|ref|YP_003282349.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892951|ref|ZP_06301186.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8117]
 gi|282927982|ref|ZP_06335591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A10102]
 gi|284024454|ref|ZP_06378852.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848419|ref|ZP_06789165.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9754]
 gi|295407205|ref|ZP_06817005.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8819]
 gi|296275347|ref|ZP_06857854.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297244629|ref|ZP_06928512.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8796]
 gi|304380963|ref|ZP_07363621.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|81832505|sp|Q7A5K4|DING_STAAN RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81855933|sp|Q99U34|DING_STAAM RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81859586|sp|Q5HFW8|DING_STAAC RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|122539544|sp|Q2FYH5|DING_STAA8 RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|123485907|sp|Q2FGY5|DING_STAA3 RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|13701253|dbj|BAB42548.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247226|dbj|BAB57617.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|57284596|gb|AAW36690.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127000|gb|ABD21514.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202747|gb|ABD30557.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147741010|gb|ABQ49308.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946456|gb|ABR52392.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus JH1]
 gi|150374378|dbj|BAF67638.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368432|gb|ABX29403.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|257789461|gb|EEV27801.1| DnaQ family protein [Staphylococcus aureus A9781]
 gi|257839862|gb|EEV64330.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9763]
 gi|257843543|gb|EEV67950.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9719]
 gi|257849952|gb|EEV73910.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9299]
 gi|257850282|gb|EEV74235.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8115]
 gi|257853568|gb|EEV76527.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6300]
 gi|257856986|gb|EEV79886.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6224]
 gi|257861168|gb|EEV83981.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5948]
 gi|257862976|gb|EEV85740.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5937]
 gi|262075370|gb|ACY11343.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940948|emb|CBI49332.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282590279|gb|EFB95359.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A10102]
 gi|282764948|gb|EFC05073.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8117]
 gi|285817135|gb|ADC37622.1| DinG family ATP-dependent helicase YoaA [Staphylococcus aureus
           04-02981]
 gi|294824445|gb|EFG40868.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9754]
 gi|294967918|gb|EFG43947.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8819]
 gi|297178659|gb|EFH37905.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8796]
 gi|304340488|gb|EFM06424.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|315129170|gb|EFT85165.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus CGS03]
 gi|315197799|gb|EFU28133.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320140373|gb|EFW32229.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142700|gb|EFW34503.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314132|gb|AEB88545.1| Probable ATP-dependent helicase dinG -like protein [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329723190|gb|EGG59721.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329727432|gb|EGG63888.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 897

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +    + T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQY-RPKKVIDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I +   P      L+ L + +GIT+++   H A  D+   + + I
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163


>gi|282854298|ref|ZP_06263635.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139]
 gi|282583751|gb|EFB89131.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139]
          Length = 633

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 63  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-SIPASVQVLT 119

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD  ++  PS +++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 120 GITDVMVRSAPSLNAVLPSWSEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWDDPA-V 176

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 177 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 232

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 233 GNLGVTTLEDLL 244


>gi|311741608|ref|ZP_07715431.1| epsilon subunit family exonuclease [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303272|gb|EFQ79352.1| epsilon subunit family exonuclease [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 221

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTG + + DRIIE+ AV    +     ++   L P+G+    +   +HGIT++
Sbjct: 21  FAVIDTETTGFNKRYDRIIELAAVRADSHFNPIDSWHTLLNPDGKAI--KNSHIHGITND 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPLDPSRIID 125
            +   P+FS ++ +F  + +    +  AHNA FD   I AE+ R+   + D  +    ID
Sbjct: 79  MVVTAPTFSEVYGDFTSYID--GMQLFAHNAPFDSKMIVAEVDRMTGGDNDGDEFFPFID 136

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           T+ +A++       +L +L  R G+       H A+ D+    ++   +
Sbjct: 137 TIDLAKQMLDCGPYNLPALLDRLGLDNPD--AHAAVADATSTVNMLHAL 183


>gi|282921701|ref|ZP_06329418.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9765]
 gi|282593963|gb|EFB98952.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9765]
          Length = 897

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +    + T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I +   P      L+ L + +GIT+++   H A  D+   + + I
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163


>gi|239928032|ref|ZP_04684985.1| DNA polymerase III [Streptomyces ghanaensis ATCC 14672]
 gi|291436367|ref|ZP_06575757.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291339262|gb|EFE66218.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 631

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 86/187 (45%), Gaps = 9/187 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ET+GL ++ DR++ +  + +    +    F   L P      P  +++HG+T E L+
Sbjct: 23  VDVETSGLMARRDRVLSVAVITIGPDGEQTGEFSTLLNPGC---DPGPVEVHGLTVERLQ 79

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P+F  +          Q    +AHNA+FD  F+  E  R  +  L  S+ + TL++ R
Sbjct: 80  GAPTFDQVAGRIGAML--QGRVLVAHNAQFDYDFLAHEFARA-RMWLPVSQRLCTLALNR 136

Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           +  P + +  L +L   YG+  S +  H AL D+ +L+ +    +   ++++        
Sbjct: 137 QVDPPTDDMKLGTLAAHYGV--SRQRAHDALDDTRVLAGILRASLREAARLDLPLPLVTC 194

Query: 191 RFFKEEK 197
               E +
Sbjct: 195 PPRAESQ 201


>gi|49483644|ref|YP_040868.1| hypothetical protein SAR1466 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425521|ref|ZP_05601946.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428180|ref|ZP_05604578.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257433568|ref|ZP_05609926.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436410|ref|ZP_05612457.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282904038|ref|ZP_06311926.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905803|ref|ZP_06313658.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908773|ref|ZP_06316591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911034|ref|ZP_06318836.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914246|ref|ZP_06322033.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M899]
 gi|282919169|ref|ZP_06326904.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282924353|ref|ZP_06332027.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C101]
 gi|283958220|ref|ZP_06375671.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293501272|ref|ZP_06667123.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510233|ref|ZP_06668941.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M809]
 gi|293526828|ref|ZP_06671512.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295427965|ref|ZP_06820597.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297591065|ref|ZP_06949703.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|81828017|sp|Q6GGV4|DING_STAAR RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|49241773|emb|CAG40464.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271978|gb|EEV04116.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275021|gb|EEV06508.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257281661|gb|EEV11798.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284692|gb|EEV14812.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282313740|gb|EFB44133.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C101]
 gi|282316979|gb|EFB47353.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282322314|gb|EFB52638.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M899]
 gi|282324729|gb|EFB55039.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327037|gb|EFB57332.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282331095|gb|EFB60609.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595656|gb|EFC00620.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus C160]
 gi|283790369|gb|EFC29186.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920386|gb|EFD97450.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291096277|gb|EFE26538.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291467177|gb|EFF09695.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M809]
 gi|295128323|gb|EFG57957.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297575951|gb|EFH94667.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312438140|gb|ADQ77211.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195353|gb|EFU25740.1| hypothetical protein CGSSa00_06780 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 897

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +    + T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAEEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I +   P      L+ L + +GIT+++   H A  D+   + + I
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163


>gi|283770528|ref|ZP_06343420.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus
           H19]
 gi|283460675|gb|EFC07765.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus
           H19]
          Length = 897

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +    + T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I +   P      L+ L + +GIT+++   H A  D+   + + I
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163


>gi|323442219|gb|EGA99850.1| ATP-dependent DNA helicase [Staphylococcus aureus O46]
          Length = 897

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +    + T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I +   P      L+ L + +GIT+++   H A  D+   + + I
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163


>gi|312829847|emb|CBX34689.1| dnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus ECT-R 2]
          Length = 897

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +    + T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I +   P      L+ L + +GIT+++   H A  D+   + + I
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163


>gi|269115238|ref|YP_003303001.1| DNA polymerase III polC-type [Mycoplasma hominis]
 gi|268322863|emb|CAX37598.1| DNA polymerase III polC-type [Mycoplasma hominis ATCC 23114]
          Length = 1437

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 6/168 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL  + D IIE GA  + + + T +  Q FL    R+ S   ++   I +E
Sbjct: 407 YVVFDLETTGLSPRLDDIIEFGATIVKNNTIT-QKIQFFL-QTKRELSAFTVESSHINNE 464

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK+  +      + ++   ++ A  +AHNA FD+ F   +  ++  D       +DTL+
Sbjct: 465 MLKNGYAQEEGIKKIYEILKDKIA--VAHNANFDINFCKEKFSKLGLDNSKIF-GLDTLA 521

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++   +P   R+ L  + KR+ I       H    D+++L+ ++IKM+
Sbjct: 522 LSYFLNPDEFRHSLGYVAKRFNIIYDTTVAHRGDYDANVLAKIWIKMI 569


>gi|156979774|ref|YP_001442033.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|156721909|dbj|BAF78326.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp.
           aureus Mu3]
          Length = 897

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +    + T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I +   P      L+ L + +GIT+++   H A  D+   + + I
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163


>gi|238026493|ref|YP_002910724.1| exonuclease, DNA polymerase III subunit epsilon family/GIY-YIG
           catalytic domain-containing protein [Burkholderia glumae
           BGR1]
 gi|237875687|gb|ACR28020.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia glumae BGR1]
          Length = 381

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG VE+        T+   + P  +       +L GITD  
Sbjct: 20  AFVDLETTGGSATEHRITEIGVVEVGPNG--VSTWSSLIDP-CQPIPAFIQQLTGITDAM 76

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  PSF+SI +  +     +   +IAHNA FD GF+ AE +R          ++ T+ +
Sbjct: 77  VRGAPSFASIAAALYARL--EGRFFIAHNASFDRGFLRAEFERAGYAFNPD--VLCTVRL 132

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+ +  +  ++H AL D+ L+   + ++
Sbjct: 133 SRALFPRESRHGLDALIERHALVPN--ARHRALADADLVWQFWRRL 176


>gi|257430810|ref|ZP_05607192.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257278938|gb|EEV09557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 68-397]
          Length = 905

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +    + T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAEEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQY-RPKKVIDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I +   P      L+ L + +GIT+++   H A  D+   + + I
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163


>gi|237732820|ref|ZP_04563301.1| DNA polymerase III subunit epsilon [Mollicutes bacterium D7]
 gi|229384061|gb|EEO34152.1| DNA polymerase III subunit epsilon [Coprobacillus sp. D7]
          Length = 224

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 16/188 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP----NGRKNSPEALKLHG 64
            +VFD+ETTG + K DRIIEIGA+++ +    +R F     P         S +  ++ G
Sbjct: 41  YVVFDLETTGFNKKEDRIIEIGAIKVKNGRVVDR-FSTLCAPIKGGKPMYISAKITEVTG 99

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI 123
           I +  L ++   S     F  +   ++   +AHN  KFD+ F+    +R N +    + I
Sbjct: 100 IKNVDLLNQIPESEAVKNFMCWLG-ESKISVAHNGLKFDIPFLKEACKRSNVE-FKFTHI 157

Query: 124 IDTLSIARRK-----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +DT+ +++            N   +L + +G+       H A+ D   L  ++ K+    
Sbjct: 158 LDTMLLSKALNYVNNGNIPNNKQETLARYFGVDY---QAHRAVNDCEALLKIFDKLKNDA 214

Query: 179 SQINFGFK 186
             INF  K
Sbjct: 215 KNINFSLK 222


>gi|167903799|ref|ZP_02491004.1| possible DNA polymerase/helicase [Burkholderia pseudomallei NCTC
           13177]
          Length = 349

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG V +   +    T+   + P  +   P   +L GITD  
Sbjct: 16  AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F+ I    ++  +     ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|167895415|ref|ZP_02482817.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 7894]
          Length = 350

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG V +   +    T+   + P  +   P   +L GITD  
Sbjct: 16  AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F+ I    ++  +     ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|314981011|gb|EFT25105.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA3]
 gi|315093023|gb|EFT64999.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL060PA1]
          Length = 597

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 27  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-SIPASVQVLT 83

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD  ++  PS +++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 84  GITDVMVRSAPSLNAVLPSWSEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWDDPA-V 140

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 141 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 196

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 197 GNLGVTTLEDLL 208


>gi|262283016|ref|ZP_06060783.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp.
           2_1_36FAA]
 gi|262261268|gb|EEY79967.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp.
           2_1_36FAA]
          Length = 818

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 106/242 (43%), Gaps = 18/242 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+  + D+E TG  S   +II++G V L D  +  +T+Q  + P+         +L G++
Sbjct: 1   MKYAIVDLEATGTGS-TAKIIQVGIVILEDG-EIKQTYQTDINPHEA-LEEHIKQLTGLS 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ L   P FS +  E ++    ++A ++AHN KFD   +   L     D L P   +DT
Sbjct: 58  DQRLSQAPDFSQVAREIYELI--EDAVFVAHNVKFDANLLAESLFWEGFDLLSP--RVDT 113

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           + +A+   P+  +  L+SLC+   I +     H A+ D+   + +++K+      +    
Sbjct: 114 VELAQVVFPTYEKYGLSSLCELLEIPLE--QAHTAISDAMATALLFLKIQEKIQSLPKPL 171

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAIWDRYIS 242
                            +     +K    R   + LD H   +     +GK    +RY+S
Sbjct: 172 LERLLILSNSLIYESRLVLEDCFEKMPEGRAC-DWLDCHGIYLKKQAKVGK----ERYLS 226

Query: 243 SN 244
           ++
Sbjct: 227 TD 228


>gi|221195203|ref|ZP_03568259.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626]
 gi|221185106|gb|EEE17497.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626]
          Length = 1031

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 96/228 (42%), Gaps = 21/228 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGL  K   +IEI A + +   +    F+ F+ P  +   PE + L  ITDE
Sbjct: 64  IVVLDTETTGLSFKTCGLIEISAAK-ISGREIVERFETFVDP-RKPIPPEIVALTHITDE 121

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P      S   DF        +AHNA FD  FI    +R+       +  IDTLS
Sbjct: 122 DVAGAPRAKEAVSALADFVG--GLPVLAHNAVFDRTFI----ERVPGGHEVSNTWIDTLS 175

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R   P  S + L+ + + +G   + R  H A  D   L  ++  +++G   +  G   
Sbjct: 176 LSRIALPRLSSHKLSRMAEAFG---ALRVTHRASDDVDALVGMWRIILLGLLDLPRGLLD 232

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
                 ++ + T+         +P+F  I   + +    T   LG  +
Sbjct: 233 MFAEMHEDVEWTI---------RPIFAHIAAMKQEAAKGTGAPLGPQS 271


>gi|315924662|ref|ZP_07920879.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621561|gb|EFV01525.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 178

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 9/174 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFD+ET   + +N R+  IG   + D   T+  F   + P          +L GI +
Sbjct: 3   RFVVFDVETP--NRENRRMSAIGITVIEDGKITDE-FYSLVNPETY-FDYFNTRLTGICE 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + + P+F  ++       +      +AHNA FD+G +   L+    +     R + T+
Sbjct: 59  DAVWNAPTFPELWKTIAPMLSSG--LLVAHNAVFDMGVLKRCLRDYRIEWKPHVRYLCTV 116

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            + RR  P   + LN LC  YGI ++H   H A  DS   + + ++ +  G+ +
Sbjct: 117 QMGRRIIPGMSHKLNVLCDYYGINLAH---HQAASDSRACAQILLRYLEVGADV 167


>gi|283470668|emb|CAQ49879.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 897

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +    + T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNHIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAEEIYDKI--KDCIFVAHNVDFDLNFIKKAFKNCNIQY-RPKKVIDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I +   P      L+ L + +GIT+++   H A  D+   + + I
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163


>gi|169627433|ref|YP_001701082.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus ATCC
           19977]
 gi|169239400|emb|CAM60428.1| DNA polymerase III, epsilon subunit (DnaQ) [Mycobacterium
           abscessus]
          Length = 327

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 9/183 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +V D+ET+G      R+I + A+ +        +    L P      P    +HG+T 
Sbjct: 13  KWVVVDLETSGFQPGRARVISVAALAMDADGTITDSVVSLLNPG---VDPGPTHVHGLTP 69

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L+ +P FS I  +       +    +AHN  FD  F+ AE + +  + L    ++ T+
Sbjct: 70  EMLEGQPEFSDIAPDLIALL--RGRTLVAHNVGFDYSFLAAEAELVGAE-LPTEAVMCTV 126

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            + RR    + N  L +L   +G+       H A  D+ +L++V  K++    +      
Sbjct: 127 ELTRRLELDTPNLRLETLAAHWGVE--QLKAHDAYDDARVLAEVLPKVLERARERGTWLP 184

Query: 187 TNE 189
             E
Sbjct: 185 IRE 187


>gi|258422513|ref|ZP_05685421.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9635]
 gi|257847270|gb|EEV71276.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9635]
          Length = 897

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +    + T+   +     +  P    L  I ++
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEK 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +D    ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQY-RPKKVIDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I +   P      L+ L + +GIT+++   H A  D+   + + I
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163


>gi|295398569|ref|ZP_06808601.1| possible DNA-directed DNA polymerase III epsilon subunit
           [Aerococcus viridans ATCC 11563]
 gi|294973170|gb|EFG48965.1| possible DNA-directed DNA polymerase III epsilon subunit
           [Aerococcus viridans ATCC 11563]
          Length = 957

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    N DRII+IG V  +   +    F   + PN ++   E  KL GIT+
Sbjct: 8   YAVLDLETTGSTYDNGDRIIQIG-VAFVQNGQVVDQFATDIFPN-QEIPREITKLTGITN 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +K  P F ++    W      N   +AHN  FD  F++   Q     P      +DT+
Sbjct: 66  EQVKRAPKFEAVAEILWQ--KLSNTVIVAHNIGFDYKFLDKSFQAHGY-PAMTHDRVDTV 122

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            + R   P++    L   C  +GI + +   H A+ D+   + + I
Sbjct: 123 EMVRTLFPTADSYKLGEFCLAHGIQLEN--AHTAIDDAVATAHILI 166


>gi|323342398|ref|ZP_08082630.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463510|gb|EFY08704.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 200

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 12/176 (6%)

Query: 4   KNKMRKI----VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           +N ++ +    V D+ETTG  +K + I E+ A++  +Y + +  F   + P+     P  
Sbjct: 6   ENLLKFVPNFTVIDLETTGRSNKFEDITELSAIKYRNYKQVD-AFSTLVKPDN-SILPFV 63

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           ++L GIT+E + D P    +  +F DF        + HN  FD G +  +          
Sbjct: 64  VELTGITEEMVSDAPKIDQVIKQFVDFIGTD--VILGHNVMFDYG-LVYDAYLATVGLRM 120

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +  +DTL ++R  +  S+ + L +LC  +   +     H    D    ++VYIKM
Sbjct: 121 HNDYVDTLRVSRLLNKDSKNHKLETLCAYF--DVERLVGHRGSEDCLQTAEVYIKM 174


>gi|332882730|ref|ZP_08450341.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332679232|gb|EGJ52218.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 442

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI       +  T++ F   + P  R       KL GI ++
Sbjct: 2   YAILDIETTGGKYDEEGITEIAIYRFDGHELTDQ-FISLINPE-RPIQDFVTKLTGINNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P F  +     +    Q+   + HNA FD   +  E +R+  D +  +  + T+ 
Sbjct: 60  MLRNAPKFYEVAKRIVEI--TQDTIIVGHNAAFDYRILQTEFRRLGYDYIRTT--LCTVE 115

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++++  P      L  L +  GI +S R  H A  D+    +++  ++ 
Sbjct: 116 LSQQLLPEKESYSLGKLVRSLGIPMSER--HRASGDALATLNLFKYLLE 162


>gi|256818923|ref|YP_003140202.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM
           7271]
 gi|256580506|gb|ACU91641.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM
           7271]
          Length = 442

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I +I A+   +  +    F   + P  R       KL GI ++
Sbjct: 2   YAILDIETTGGKYNEEGITDI-AIYQFNGHEITDQFISLINPE-RPIQEFVTKLTGINNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P F  +     +     +   + HNA FD   +  E +R+  D +  +  + T+ 
Sbjct: 60  MLRNAPKFYEVAKRIVEI--TTDCIIVGHNAAFDYRILQTEFRRLGYDFVRTT--LCTVE 115

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++ R  P+     L  L +  GI +S R  H A  D+     ++  ++ 
Sbjct: 116 LSERLIPNKESYSLGKLVRSLGIPVSDR--HRASGDALATLKLFKYLLE 162


>gi|314966430|gb|EFT10529.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA2]
 gi|315091670|gb|EFT63646.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA4]
 gi|327327874|gb|EGE69650.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL103PA1]
          Length = 590

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 13/192 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +++   V D+ETTG   +  +I EIGAV+ +   +    FQ  +CP G         L 
Sbjct: 20  LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-SIPASVQVLT 76

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITD  ++  PS +++   + +F   ++   +AHNA+FD+GF+     + +    DP+ +
Sbjct: 77  GITDVMVRSAPSLNAVLPSWSEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWDDPA-V 133

Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +DTL++AR            L++L + +  T +    H AL D+    DV   ++     
Sbjct: 134 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 189

Query: 181 INFGFKTNEDRF 192
            N G  T ED  
Sbjct: 190 GNLGVTTLEDLL 201


>gi|195542024|gb|ACF98221.1| putative DNA polymerase III epsilon subunit [uncultured bacterium
           1114]
          Length = 312

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 10/211 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL 60
              +++     D ETTGLD   DRI+ IGAV L       +RTF+  + P G      A 
Sbjct: 21  TLLSELPVTALDTETTGLDPGRDRIVAIGAVRLHGRRLYPSRTFETLVRP-GISIPASAS 79

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI D  +   P  + I+     +   +    + H+  FD+  I A  +R      +P
Sbjct: 80  AIHGIGDAMVAGAPGMAEIWPRLSPWLAGR--VVLGHHVDFDLAMIGAAARRHGFSWTEP 137

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              +DT  +      SS  DL+   +R+G+T+  R  H AL DS + + VY++++     
Sbjct: 138 FA-LDTARLVAALDGSSPVDLDEAAQRHGVTLEGR--HSALGDSLIAARVYLRLVP--RL 192

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
           +  G  T  D    + +   P +   +   P
Sbjct: 193 VERGVVTLGDAIRFQGRDAAP-LQSFRAPAP 222


>gi|157962392|ref|YP_001502426.1| ribonuclease T [Shewanella pealeana ATCC 700345]
 gi|157847392|gb|ABV87891.1| ribonuclease T [Shewanella pealeana ATCC 700345]
          Length = 232

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 20/199 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGA-VELLDYSKT---NRTFQVFLCP-NGR 53
           + KN+ R    +V D+ET G ++K D ++EI   +  +D       ++T    + P  G 
Sbjct: 9   LMKNRFRGYFPVVIDVETAGFNAKTDALLEIAVSMLKMDDEGVLALDKTLHFNIEPFEGA 68

Query: 54  KNSPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGF 105
              PEAL   GI         + +K +F  IF E               +AHNA FD GF
Sbjct: 69  NLEPEALAFTGIDPTSPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGF 128

Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   ++R  + + P  P    DT ++A          L   C   GI   +R  H AL D
Sbjct: 129 VTQAIERNALKRTPFHPFATFDTAALAGLAI--GHTVLAKACAMAGIPFDNREAHSALYD 186

Query: 164 SHLLSDVYIKMMVGGSQIN 182
           +   ++++  ++     + 
Sbjct: 187 TERTAELFCLIVNRWKALG 205


>gi|167920040|ref|ZP_02507131.1| possible DNA polymerase/helicase [Burkholderia pseudomallei BCC215]
          Length = 346

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG V +   +    T+   + P  +   P   +L GITD  
Sbjct: 16  AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F+ I    ++  +     ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|328544128|ref|YP_004304237.1| DNA polymerase III, epsilon subunit [polymorphum gilvum
           SL003B-26A1]
 gi|326413871|gb|ADZ70934.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 719

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 13/213 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALKLHGITD 67
           +V D ETTGLD ++DRI++IGAV +   ++ + T  F+V + P G      A ++HG+ D
Sbjct: 21  VVLDTETTGLDVRHDRIVQIGAVRMH-GAEIDETAVFEVTVDP-GIPIPEVASRIHGLAD 78

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +  KP  +++  +   F    +A  + H+  FD+  +  E +R      +P  +   L
Sbjct: 79  ADVAGKPGLAAVMPDLVAFIG--DAVVVGHSIHFDMAVLRHEAERHGFVWKEPRALDVAL 136

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI----KMMVGGSQINF 183
             A          L+SL    G+TI+ R  H AL D+   + VY     K++VGG +   
Sbjct: 137 MAAGLDRELVDTSLDSLALGLGVTITGR--HTALGDALATARVYAALQPKLLVGGVR-TL 193

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           G      R          +     R        
Sbjct: 194 GETETLCRRATGLIARQEDAGWFARPSERPDFA 226


>gi|313672733|ref|YP_004050844.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939489|gb|ADR18681.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 195

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 90/181 (49%), Gaps = 12/181 (6%)

Query: 1   MIRKN--KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKN 55
           M+ K+  +   IV D+ETTG+   K  +I+EI A+++    K N   +F   + P     
Sbjct: 1   MLNKSIYETDFIVIDLETTGISPYKGAKIVEIAALKIEKGLKINPKNSFYSLVNP-LIPI 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
              A ++H I++E +KD P+   +  +F +F +      I  N  FD  FI       N 
Sbjct: 60  PYSAYRVHKISNEIVKDYPTIEKVLPKFLEFLDT--PFIIGQNISFDYSFIKYFSDLYNF 117

Query: 116 DPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYI 172
             L    IIDT++IA++  P+  R +L++L   +GI   + +  +H A  D +  + ++I
Sbjct: 118 R-LKEFIIIDTINIAKKIAPNLKRYNLDNLITYFGIENILGNGKRHRADFDIYATALIFI 176

Query: 173 K 173
           K
Sbjct: 177 K 177


>gi|261868521|ref|YP_003256443.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413853|gb|ACX83224.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 217

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 90/199 (45%), Gaps = 20/199 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53
           I K++ R    +V D+ET GL++K D ++E+ A+ L          ++     +    G 
Sbjct: 12  ILKHRFRGYLPVVIDVETAGLNAKTDALLELAAITLKMDENGNLLPDQKCHFHIQAFEGA 71

Query: 54  KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105
              PE+LK +GI  D  L+   S +   SE +          + Q +  +AHNA FD GF
Sbjct: 72  NIDPESLKFNGIDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNAAFDQGF 131

Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A  QR+N  ++P  P    DT +++       +  L   C+   I    +  H AL D
Sbjct: 132 LMAAAQRMNAKRNPFHPFSTFDTATLSGFMF--GQTVLVKACQAAKIPFDSQQAHSALYD 189

Query: 164 SHLLSDVYIKMMVGGSQIN 182
           +   ++++  M+    Q+ 
Sbjct: 190 TERTAELFCYMVNHLKQLG 208


>gi|297194325|ref|ZP_06911723.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152225|gb|EFH31608.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 658

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 11/204 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ET+GL ++ DR++ +  V +         F   L P      P  + +HG+T E L 
Sbjct: 23  VDVETSGLVARRDRVLSVAVVTVGPDGAQTGEFSTLLDPGC---DPGPVHVHGLTAERLH 79

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P+F  +          +    +AHNA+FD  F+  E  R     L  +R + TL++ R
Sbjct: 80  GAPAFEEVAQRISQML--EGRVLVAHNAQFDYDFLAHEFARAGVS-LPVARRLCTLALNR 136

Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R  P +++  L +L   YG+       H AL D+ +L+ V    +   ++++        
Sbjct: 137 RVDPPTQDLRLGTLAAHYGVP--QLRAHDALDDTRVLAGVLRASLREAARLDLRLPFVAC 194

Query: 191 RFFKEEK--KTVPNISLLKRDKPL 212
              ++ +   + P      R+   
Sbjct: 195 PPRQDARFTPSPPKTPCAYRNPGR 218


>gi|223043083|ref|ZP_03613130.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus capitis SK14]
 gi|222443294|gb|EEE49392.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus capitis SK14]
          Length = 900

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 8/166 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + D+ETTG     D II+IG   + ++   + T+   +     +  P    L  I ++
Sbjct: 6   YAIVDLETTGNQLDYDEIIQIGITFVRNHKIID-TYHSMIR-TDLEIPPFIQALTSIEED 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ +  + +D    ++  ++AHN  FD+ FI       +     P +++DTL 
Sbjct: 64  MLAQAPYFNEVAEDIYDQI--KDCIFVAHNISFDLNFIKNAFNNCDIQ-FKPKKVMDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + +   P      L+ L + + I +     H A  D+   + + IK
Sbjct: 121 LFKIAFPTDKSYQLSELAQAHDIPLD--KAHRADEDATTTAKLMIK 164


>gi|171780060|ref|ZP_02920964.1| hypothetical protein STRINF_01848 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281408|gb|EDT46843.1| hypothetical protein STRINF_01848 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 827

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 87/175 (49%), Gaps = 10/175 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++ N  +  V D+E TG  +    II++G V +++  +  +T+Q  + P+    +   +
Sbjct: 1   MMQVNSQKYAVVDLEATGAHAM-AEIIQVGIV-IIENDQIVKTYQTDVNPHEA-LTEHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITDE L   P FS +  E +   +  +  ++AHN KFD   +  +L     +   P
Sbjct: 58  HLTGITDEQLAKAPDFSKVAQEIYHLIS--DCVFVAHNVKFDANLLAEKLFLEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             ++DT+ +++  +P+  +  L  L     + ++    H A+ D++  + + +K+
Sbjct: 116 --LVDTVELSQVFYPTLEKYTLGHLADVLQLDLTD--AHTAISDAYATAQLLLKL 166


>gi|332969609|gb|EGK08627.1| DNA polymerase III, epsilon subunit [Kingella kingae ATCC 23330]
          Length = 463

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 10/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  ++ D+ETTG     DRI E+  +         +     + P  ++ SP   KL GI 
Sbjct: 26  MPVVILDLETTGGHFVQDRITEVAFLRFWQGD--VQRVSYLVNPQ-KEISPFVQKLTGID 82

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++  P+ + I  +       + A +IAHN++FD  F   E QR        +  + +
Sbjct: 83  NQMVRRAPALAKILPDLLPLL--RGALFIAHNSRFDYTFWRNECQRAGVAFA--ALTLCS 138

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + ++R+ +P   ++ L+S+ +R G+ +  R  H A+ D   L+    + +
Sbjct: 139 VQLSRKLYPQYHKHSLDSIIERNGLIVPSR--HRAMADVDALAQFLQQAL 186


>gi|261343971|ref|ZP_05971616.1| ribonuclease T [Providencia rustigianii DSM 4541]
 gi|282568361|gb|EFB73896.1| ribonuclease T [Providencia rustigianii DSM 4541]
          Length = 214

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 20/196 (10%)

Query: 5   NKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNS 56
           N+ R    +V D+ET G + K D ++EI A+ L   ++     + T    + P  G    
Sbjct: 12  NRFRGYYPVVIDVETGGFNPKTDGLLEIAAITLKMDNEGWLSIDETLHFHVEPFEGANLE 71

Query: 57  PEALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINA 108
           P AL   GI     L+   S        +    +         A  +AHNA FD  F+  
Sbjct: 72  PAALAFTGIDPTNPLRGAVSEYDALHAIFKTIRKGMKNTDCNRAIMVAHNANFDHSFVMN 131

Query: 109 ELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +R  + ++P  P    DT +++       +  L   C   GI    +  HGAL D++ 
Sbjct: 132 AAERSGLKRNPFHPFATFDTAALSGLVF--GQTILAKACVTAGIPFDGKQAHGALYDTNR 189

Query: 167 LSDVYIKMMVGGSQIN 182
            + ++ +++    ++ 
Sbjct: 190 TALLFCELVNKWKKLG 205


>gi|313206803|ref|YP_004045980.1| DNA polymerase iii, epsilon subunit [Riemerella anatipestifer DSM
           15868]
 gi|312446119|gb|ADQ82474.1| DNA polymerase III, epsilon subunit [Riemerella anatipestifer DSM
           15868]
 gi|315023876|gb|EFT36878.1| DNA polymerase III epsilon subunit [Riemerella anatipestifer RA-YM]
 gi|325335757|gb|ADZ12031.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases
           [Riemerella anatipestifer RA-GD]
          Length = 407

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIE+ G   + + IIE+      D  K    F   + P     S    KL GIT +
Sbjct: 2   YSVIDIESNGGAFREECIIEVAIYRY-DGHKIVDQFISMVNPE-ADISHFVQKLTGITPK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K  P F  I     +    + +  + HN  FD   +    +R+          +DT+ 
Sbjct: 60  MVKTAPKFHEIAKRIIEI--TEGSTLVGHNVDFDYRMLRQSFKRLGYHF--SIETLDTIP 115

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +A++  P      L  L K  GI ++    H A  D+    D++  +M 
Sbjct: 116 LAKKLIPNEESYSLGKLVKSLGIPLA--EHHRASSDARATLDLFKLLMT 162


>gi|270284149|ref|ZP_05965623.2| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093]
 gi|270277190|gb|EFA23044.1| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093]
          Length = 214

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 76/186 (40%), Gaps = 29/186 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  DIETTGL  + + I EIGAV + D    +R F + + P G+        L GI+D 
Sbjct: 18  YISLDIETTGLAPRQETITEIGAVRVRDGRIADR-FSMLINP-GKHIPSRITALTGISDA 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR------ 122
            ++D P        F D+ +      I HN +FD+ F+  E   ++     P        
Sbjct: 76  MVEDAPMIDEAIPAFVDWVD--GDRLIGHNIRFDLSFLLKEAMLLDAALATPFNAKAVNP 133

Query: 123 -----------------IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
                             +DT+ I R   PS R+ L+ L  RYG+  +    H AL D+ 
Sbjct: 134 AAMTTTAEITRAMLGPDPLDTMMIDRWLFPSERHRLSDLIVRYGV--ADTEAHRALSDAT 191

Query: 166 LLSDVY 171
                +
Sbjct: 192 QTYQCF 197


>gi|242239125|ref|YP_002987306.1| ribonuclease T [Dickeya dadantii Ech703]
 gi|242131182|gb|ACS85484.1| ribonuclease T [Dickeya dadantii Ech703]
          Length = 225

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 84/212 (39%), Gaps = 22/212 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G +++ D ++EI AV L      + + + T    + P  G   +P
Sbjct: 15  RFRGFYPVVIDVETAGFNAQTDALLEIAAVTLKMDDNGWLQPDETLHFHIEPFEGAILNP 74

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           +AL  +GI         + +  +   IF        ++       +AHNA FD  F+ A 
Sbjct: 75  DALAFNGIDPTNPLRGAVSEYEALHEIFKMVRKGIKDKGCNRGIVVAHNAAFDHSFLMAA 134

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P    DT S++       +  L   C    I       H AL D+   
Sbjct: 135 AERCGLKRNPFHPFVTFDTTSLSGLVL--GQTVLAKACITADILFDSSQAHSALYDTQRT 192

Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFK 194
           ++++ +++     +GG  +      N+     
Sbjct: 193 AELFCELVNRWKRLGGWPLAVEDSDNDSAVNA 224


>gi|167846824|ref|ZP_02472332.1| possible DNA polymerase/helicase [Burkholderia pseudomallei B7210]
          Length = 348

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG V +   +    T+   + P  +   P   +L GITD  
Sbjct: 16  AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F+ I    ++  +     ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|237752604|ref|ZP_04583084.1| DNA polymerase III subunit epsilon [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376093|gb|EEO26184.1| DNA polymerase III subunit epsilon [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 267

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 8/163 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIET G +      IEIG +++ +  K    F+ F+     +      K+ GI  +
Sbjct: 71  FCIVDIETNGHNPCVHTPIEIGTLKVRNG-KVVDCFESFV--FNAEIPEYITKITGINAQ 127

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P  +S+  +F  F    ++ ++AHN  FD  F++  L++     L   R + T+ 
Sbjct: 128 MLENAPKLASVLEKFKLFLG--DSIFVAHNVDFDYNFLSQSLEKCGFGYLYNPR-LCTIK 184

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +A+R   + R  L  L +  GI   H++ H AL DS    +++
Sbjct: 185 LAQRVLQAPRYSLGFLNEFLGIN--HQNLHRALQDSKTALEIF 225


>gi|212712065|ref|ZP_03320193.1| hypothetical protein PROVALCAL_03142 [Providencia alcalifaciens DSM
           30120]
 gi|212685587|gb|EEB45115.1| hypothetical protein PROVALCAL_03142 [Providencia alcalifaciens DSM
           30120]
          Length = 214

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 20/196 (10%)

Query: 5   NKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNS 56
           N+ R    +V D+ET G + K D ++EI A+ L      +   + T    + P  G    
Sbjct: 12  NRFRGYYPVVIDVETGGFNPKTDGLLEIAAITLKMDKDGWLAIDETLHFHVEPFEGANLE 71

Query: 57  PEALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINA 108
           P AL+  GI     L+   S        +    +         A  +AHNA FD  F+  
Sbjct: 72  PSALEFTGIDPTNPLRGAVSEYDALHAIFKTIRKGMKNTDCNRAIMVAHNANFDHSFVMN 131

Query: 109 ELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +R  + ++P  P    DT +++       +  L   C   GI    +  HGAL D++ 
Sbjct: 132 AAERSGLKRNPFHPFATFDTAALSGLVF--GQTILAKACVTAGIPFDGKQAHGALYDTNR 189

Query: 167 LSDVYIKMMVGGSQIN 182
            + ++ +++    ++ 
Sbjct: 190 TALLFCELVNKWKKLG 205


>gi|167825322|ref|ZP_02456793.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 9]
          Length = 352

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG V +   +    T+   + P  +   P   +L GITD  
Sbjct: 16  AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F+ I    ++  +     ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|319936397|ref|ZP_08010813.1| DNA polymerase III [Coprobacillus sp. 29_1]
 gi|319808512|gb|EFW05064.1| DNA polymerase III [Coprobacillus sp. 29_1]
          Length = 187

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 79/167 (47%), Gaps = 13/167 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL   +D+IIE+G +++ +    ++ +   + P  R+ SP   KL GIT++
Sbjct: 22  YCVIDLETTGLSWADDKIIEVGILKIRNQQIIDK-YSQLINPE-REVSPFITKLTGITND 79

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P+   I  + + F  +     + HN  FD+ F+  +           +  +DTL 
Sbjct: 80  MLLGMPTLDEIRDDVFSFIGDD--ILLGHNTSFDLNFVANQFH-----IDIENEYMDTLQ 132

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             R+ +P  ++  L  + +   ++ +    H ++ D     ++Y K+
Sbjct: 133 FCRKVYPHMKHHRLTDMVQYLNLSNNE---HRSIADCIATYELYEKI 176


>gi|254448582|ref|ZP_05062041.1| ribonuclease T [gamma proteobacterium HTCC5015]
 gi|198261771|gb|EDY86057.1| ribonuclease T [gamma proteobacterium HTCC5015]
          Length = 212

 Score =  139 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 17/188 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V DIET G +++ D ++EI AV    +     +   T    + P  G    P
Sbjct: 10  RFRGFLPVVIDIETGGFNAQTDAVLEIAAVMIDMDHQGRLRVGETISTHVEPFQGANIEP 69

Query: 58  EALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109
           ++L++ GI  +  L+   S      +                A  + HN+ FD+ F+NA 
Sbjct: 70  KSLEITGIDLNNPLRGAVSEREALDKLLKPIRSAVKNHGCTRAILVGHNSFFDLNFLNAA 129

Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           + R    ++P       DT++IA   +   +  L   C+  G+  ++   H A+ D+   
Sbjct: 130 IDRCTYKRNPFHAFSSFDTVTIAGLAY--GQTVLARACEAAGLGWNNSEAHSAVYDAEQT 187

Query: 168 SDVYIKMM 175
           + ++ K++
Sbjct: 188 ARLFCKVI 195


>gi|240168250|ref|ZP_04746909.1| hypothetical protein MkanA1_02987 [Mycobacterium kansasii ATCC
           12478]
          Length = 680

 Score =  139 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 105/221 (47%), Gaps = 23/221 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           +   +   +V D+ETTG  +        D I EIGAV++         F   + P  R  
Sbjct: 50  LPLRETTFVVVDLETTGGRTTGTEAAPPDAITEIGAVKVR-GGTVLAEFATLVDPQ-RSI 107

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P+ ++L GIT   ++D P  S++   F++F    N+ ++AHNA FD+GF+ A  ++ + 
Sbjct: 108 PPQIVQLTGITTAMVRDAPVISAVLPMFFEFAG--NSVFVAHNAGFDIGFLRAAARQCDI 165

Query: 116 DPLDPSRIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               P +++ T+ +ARR   +  +    L  L + +  +++ +  H AL D+    DV  
Sbjct: 166 TWPRP-KVLCTVRLARRVLSREEAPSVRLAELARLF--SVATQPTHRALDDARATVDVLH 222

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
            ++      N G  T     F + +  +PN++  +R K + 
Sbjct: 223 ALIERVG--NQGVHT-----FADLRSYLPNVTPAQRRKRVL 256


>gi|254295577|ref|ZP_04963035.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           406e]
 gi|157805524|gb|EDO82694.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           406e]
          Length = 381

 Score =  139 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG V +   +    T+   + P  +   P   +L GITD  
Sbjct: 16  AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F+ I    ++  +     ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|167912066|ref|ZP_02499157.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 112]
          Length = 343

 Score =  139 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG V +   +    T+   + P  +   P   +L GITD  
Sbjct: 16  AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F+ I    ++  +     ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|300767360|ref|ZP_07077272.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300495179|gb|EFK30335.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 936

 Score =  139 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 9/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K      V DIETTG   K  DRII+IG   + +    N TF   + P         
Sbjct: 1   MTMKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFVKNNKIIN-TFATDVNP-LTTVPAVI 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             L GI++  ++  P F  +    +     Q   ++AHN  FD+ FIN+ELQR+    L 
Sbjct: 59  ENLTGISNARVRKAPPFDDLAGTVYSLL--QGTVFVAHNVNFDLPFINSELQRVGYPEL- 115

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           P + +DT+S+++   P+ S   L  L     I   H   H A  D+   + ++I +
Sbjct: 116 PIQAVDTVSLSQILLPTASSFRLRDLSHLLAID--HNHPHSADSDAIATAHLFITL 169


>gi|269219422|ref|ZP_06163276.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211118|gb|EEZ77458.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 206

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 11/203 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+ETTGL    DRI+EIG V L +  +    +Q  + P        A+ +HG+T
Sbjct: 1   MGYAVVDVETTGLSPVRDRIVEIGVVLLDESGEPEGEWQSLVNPLRGM---GAVFVHGLT 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIID 125
           D  + D P+ + +  +    F+ +    +AHNA FDVGF+NA   R      +     + 
Sbjct: 58  DADVADAPTLADLLPQIRGLFSGR--ALVAHNATFDVGFLNASFARAGYGMHVPREATVC 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T+ +++   P  R+ L +  +R G+  + R  H AL D+H  + +    +   +    G 
Sbjct: 116 TMELSKIYLPPGRHGLAAAAERAGVATAKR--HRALADAHTAAGLLRHYLNAEAD---GV 170

Query: 186 KTNEDRFFKEEKKTVPNISLLKR 208
           +  E  F +  +   P   +  R
Sbjct: 171 RYAERAFSRSGEAVEPAAWIEAR 193


>gi|332140721|ref|YP_004426459.1| ribonuclease T [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550743|gb|AEA97461.1| ribonuclease T [Alteromonas macleodii str. 'Deep ecotype']
          Length = 210

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAV--ELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G ++  D ++E+ AV  ++ D      + TF   + P  G    P AL+ +
Sbjct: 17  PVVIDVETAGFNAGTDALLELAAVTVKMDDDGILHPDETFHYHIDPFEGANLEPAALEFN 76

Query: 64  GITDE-FLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI     L+     S    +              Q +  +AHNA FD  F+NA ++R N 
Sbjct: 77  GIDPNCALRGAIEESEAMKDLCKGIRKAQKNAGCQRSVIVAHNATFDQSFVNAAIERCNI 136

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT S+A       +  L   C+  GI       H AL D+   ++++  
Sbjct: 137 KRTPFHPFVSFDTTSLAGLAL--GQTVLVKACRAAGIAFDQSEAHSALYDAQKTTELFCF 194

Query: 174 MMVGGSQIN 182
           M+     + 
Sbjct: 195 MVNRYKALG 203


>gi|255542840|ref|XP_002512483.1| exonuclease, putative [Ricinus communis]
 gi|223548444|gb|EEF49935.1| exonuclease, putative [Ricinus communis]
          Length = 334

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 88/212 (41%), Gaps = 25/212 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+ETTG   + +RIIEI   +L      N TFQ  + P   +  P +  +HGIT   
Sbjct: 135 IVFDLETTGFSREYERIIEIALQDLHGGE--NSTFQTLINPG--RIVPNS-HIHGITTHM 189

Query: 70  L--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121
           +     P    +      +   +         +AHN + FDV F+  E +R   D     
Sbjct: 190 VCKPHVPRMEDLIPILLQYIRSRQKPGGYVLLVAHNGRSFDVPFLINEFKRSGVDVPCNW 249

Query: 122 RIIDTLSIARRKHPSS----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +DTL +AR+   S      + L  L + +GI +   S H A+ D  LL+ ++  +   
Sbjct: 250 LFMDTLPLARKWMKSKGLKISSSLQGLREAFGIKLEG-SAHRAMSDVRLLAKLFQMLT-- 306

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
                F  KT       E       I++ K+ 
Sbjct: 307 -----FNLKTTLPSLVAESFTASELINVKKKK 333


>gi|239944923|ref|ZP_04696860.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998]
 gi|239991387|ref|ZP_04712051.1| DNA polymerase III [Streptomyces roseosporus NRRL 11379]
 gi|291448385|ref|ZP_06587775.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351332|gb|EFE78236.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 641

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 11/205 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ET+GL ++ DR++ +  + +    +    F   L P      P  +++HG+T E L+
Sbjct: 23  VDVETSGLVARRDRVLSVAVITIGPDGEQTGEFSTLLDPGC---DPGPVEVHGLTAERLR 79

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P+F  +          Q+   +AHNA+FD  F+  E  R  +  L  S+ + TL++ R
Sbjct: 80  GAPTFDQVAGRIGAML--QDRVLVAHNAQFDYDFLAHEFARA-RMWLPVSQRLCTLALNR 136

Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           +  P + +  L +L   Y   +  +  H AL D+ +L+ +    +   ++++        
Sbjct: 137 QVDPPTDDMKLGTLATHY--DVPQQRAHDALDDTRVLAGILRASLREAARLDLPLPLVTC 194

Query: 191 RFFKEEK--KTVPNISLLKRDKPLF 213
               E +     P      R+    
Sbjct: 195 PPRAESQFTPKPPKTPCAYRNPGRL 219


>gi|167720732|ref|ZP_02403968.1| possible DNA polymerase/helicase [Burkholderia pseudomallei DM98]
          Length = 334

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG V +   +    T+   + P  +   P   +L GITD  
Sbjct: 16  AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F+ I    ++  +     ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|76808562|ref|YP_334417.1| DNA polymerase/helicase [Burkholderia pseudomallei 1710b]
 gi|126455164|ref|YP_001067249.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia
           pseudomallei 1106a]
 gi|134278018|ref|ZP_01764733.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 305]
 gi|217420886|ref|ZP_03452391.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 576]
 gi|242315973|ref|ZP_04814989.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106b]
 gi|254195634|ref|ZP_04902061.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei S13]
 gi|254261397|ref|ZP_04952451.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1710a]
 gi|76578015|gb|ABA47490.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 1710b]
 gi|126228806|gb|ABN92346.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106a]
 gi|134251668|gb|EBA51747.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 305]
 gi|169652380|gb|EDS85073.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei S13]
 gi|217396298|gb|EEC36315.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 576]
 gi|242139212|gb|EES25614.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106b]
 gi|254220086|gb|EET09470.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1710a]
          Length = 381

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG V +   +    T+   + P  +   P   +L GITD  
Sbjct: 16  AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F+ I    ++  +     ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|314933639|ref|ZP_07841004.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus caprae C87]
 gi|313653789|gb|EFS17546.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus caprae C87]
          Length = 900

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 8/166 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + ++   + T+   +     +  P    L  I ++
Sbjct: 6   YAVVDLETTGNQLDYDEIIQIGITFVSNHKIID-TYHSMIR-TDLEIPPFIQALTSIEED 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F+ +  + +D    ++  ++AHN  FD+ FI       +     P +++DTL 
Sbjct: 64  MLAQAPYFNEVAEDIYDQI--KDCIFVAHNISFDLNFIKNAFNNCDIQ-FKPKKVMDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + +   P      L+ L + + I +     H A  D+   + + IK
Sbjct: 121 LFKIAFPTDKSYQLSELAQAHDIPLD--KAHRADEDATTTAKLMIK 164


>gi|22125847|ref|NP_669270.1| ribonuclease T [Yersinia pestis KIM 10]
 gi|45441960|ref|NP_993499.1| ribonuclease T [Yersinia pestis biovar Microtus str. 91001]
 gi|149365707|ref|ZP_01887742.1| ribonuclease T [Yersinia pestis CA88-4125]
 gi|218929473|ref|YP_002347348.1| ribonuclease T [Yersinia pestis CO92]
 gi|229837906|ref|ZP_04458065.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229895067|ref|ZP_04510244.1| ribonuclease T (RNase T) [Yersinia pestis Pestoides A]
 gi|229898469|ref|ZP_04513615.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902309|ref|ZP_04517429.1| ribonuclease T (RNase T) [Yersinia pestis Nepal516]
 gi|24638167|sp|Q8ZE08|RNT_YERPE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|21958778|gb|AAM85521.1|AE013798_8 RNase T, degrades tRNA [Yersinia pestis KIM 10]
 gi|45436823|gb|AAS62376.1| ribonuclease T [Yersinia pestis biovar Microtus str. 91001]
 gi|115348084|emb|CAL21010.1| ribonuclease T [Yersinia pestis CO92]
 gi|149292120|gb|EDM42194.1| ribonuclease T [Yersinia pestis CA88-4125]
 gi|229680644|gb|EEO76740.1| ribonuclease T (RNase T) [Yersinia pestis Nepal516]
 gi|229688513|gb|EEO80583.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694272|gb|EEO84319.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701955|gb|EEO89977.1| ribonuclease T (RNase T) [Yersinia pestis Pestoides A]
 gi|320015036|gb|ADV98607.1| ribonuclease T [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 215

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G ++++D ++EI AV        +   + T    + P  G    PEAL  +
Sbjct: 19  PVVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFN 78

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113
           GI         + +  +  +IF        ++       +AHNA FD  F+ A  +R  +
Sbjct: 79  GIDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ +
Sbjct: 139 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCE 196

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 197 LVNRWKKLG 205


>gi|315634736|ref|ZP_07890020.1| ribonuclease T [Aggregatibacter segnis ATCC 33393]
 gi|315476684|gb|EFU67432.1| ribonuclease T [Aggregatibacter segnis ATCC 33393]
          Length = 217

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 20/192 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53
           + K++ R    +V D+ET GL++K D ++E+ A+ L          ++     + P  G 
Sbjct: 12  LLKHRFRGYLPVVIDVETAGLNAKTDALLELAAITLKMDDAGNLVPDQKCHFHIHPFEGA 71

Query: 54  KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105
              PE++K +GI  D  L+   S +   SE +          + Q +  +AHNA FD GF
Sbjct: 72  NIDPESIKFNGIDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNASFDHGF 131

Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A  QR+N  ++P  P    DT +++       +  L   C+   I    +  H AL D
Sbjct: 132 VMAAAQRMNAKRNPFHPFSTFDTATLSGFMF--GQTVLVKACQAAKIPFDSQQAHSALYD 189

Query: 164 SHLLSDVYIKMM 175
           +   ++++  M+
Sbjct: 190 TERTAELFCYMV 201


>gi|327483724|gb|AEA78131.1| Ribonuclease T [Vibrio cholerae LMA3894-4]
          Length = 224

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L      +     T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                 AL+  GI D F  L+   S      E +    ++        A  +AHNA FD 
Sbjct: 68  ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 127

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+ A  +R      P  P    DT +++       +  L   CK  G+   +R  H AL
Sbjct: 128 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGVEFDNREAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 186 YDTQKTAELFCTIVNQWKALG 206


>gi|59711532|ref|YP_204308.1| ribonuclease T [Vibrio fischeri ES114]
 gi|197335112|ref|YP_002155688.1| ribonuclease T [Vibrio fischeri MJ11]
 gi|59479633|gb|AAW85420.1| ribonuclease T (RNase T) [Vibrio fischeri ES114]
 gi|197316602|gb|ACH66049.1| ribonuclease T [Vibrio fischeri MJ11]
          Length = 222

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 21/200 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGR 53
           + KN+ R    +V D+ET G ++K D ++EI AV    +     K   T    + P  G 
Sbjct: 10  LLKNRFRGYFPVVIDVETAGFNAKTDALLEICAVTLAMDEQGNLKPATTIHFHVTPFEGA 69

Query: 54  KNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVG 104
               EAL+ +GI D F  L+   +      E +          + Q A  +AHNA FD  
Sbjct: 70  NIEKEALEFNGIRDPFSPLRGAVTEDVALKEIFKLVRKEQKQHDCQRAIMVAHNAHFDHS 129

Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+     R  + + P  P    DT +I+       +  L   CK  G+    +  H AL 
Sbjct: 130 FVMEAAARTKLKRIPFHPFCTFDTAAISGLAL--GQTVLAKACKTAGMDFDGKEAHSALY 187

Query: 163 DSHLLSDVYIKMMVGGSQIN 182
           D+   ++++ +++     + 
Sbjct: 188 DTEKTAELFCRIVNKWKDLG 207


>gi|329903276|ref|ZP_08273408.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548440|gb|EGF33116.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 216

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 10/207 (4%)

Query: 14  IETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
            ETTG+     DR+ E+ A+ ++     +R F   +  + R  SP   +L GIT   +  
Sbjct: 4   FETTGMSPALGDRVTEVAALRIVGGVVVDR-FVSLINCDVR-ISPFISQLTGITQAMVDR 61

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P    +  E   F         AHN  FD  F+ AE  R+   P     +I ++ ++RR
Sbjct: 62  APPVEQVMPELVRFIGSD--ALAAHNVSFDEKFLLAESARLGIVPAHAG-VICSVKLSRR 118

Query: 133 KHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191
             P  R   L +L    GI     + H A  D+ + S + + +       ++G +  + R
Sbjct: 119 VFPGLRSYALGALANSLGIRFKG-TAHRAEADAEVASALMLHI-AAHLGDHYGIREVDPR 176

Query: 192 FFKEEKK-TVPNISLLKRDKPLFTRIT 217
           F ++  + T   +    +  P    ++
Sbjct: 177 FLQQINRLTAAKVPAFLQRPPATDNVS 203


>gi|321309654|ref|YP_004191983.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801498|emb|CBY92144.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           haemofelis str. Langford 1]
          Length = 1393

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 15/197 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFDIETTGL+   D I EI   +  +  +   T+  +              L  ITDE
Sbjct: 351 YCVFDIETTGLNPLFDEITEIAIYKYSNKRRIA-TYHSYFK-ISEPLKQHIKDLTHITDE 408

Query: 69  FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDT 126
            L +K      +  E  DF   Q +  +AHN  +FD  F+NA+  ++  +PL  + +IDT
Sbjct: 409 LLAEKGQDLEVVLKEVKDF--TQGSVLVAHNGIEFDFPFLNAKYIKLGMEPLS-NPLIDT 465

Query: 127 LSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI-----KMMVGG 178
           L +++      +   + L ++CKR G+       H A  D  +L  V++     K+   G
Sbjct: 466 LRLSQTIFSEEKYKSHSLGAICKRVGVEYDLEHAHSADFDVDVLWQVFMYSLEPKLKEWG 525

Query: 179 SQINFGFKTNEDRFFKE 195
             +  G K   D  F +
Sbjct: 526 VNLEDGLKEANDAVFNK 542


>gi|78044638|ref|YP_360855.1| putative DNA polymerase III, epsilon subunit [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996753|gb|ABB15652.1| putative DNA polymerase III, epsilon subunit [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 222

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 89/171 (52%), Gaps = 8/171 (4%)

Query: 7   MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   V D+ETTGL   + D II IGAV++++ + T   F  ++ P  R+      +L GI
Sbjct: 36  LTYTVIDLETTGLKPFQGDEIIAIGAVKIINGNITRPAFHAYVNPQ-REIPEVVQRLTGI 94

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +++ P  ++  +   DF   +N+  + H+  FD+ F+N  L  +    L P R++D
Sbjct: 95  SPKTVQNAPPLTNTLTTLLDF--ARNSVIVGHSVNFDLAFLNKHLSSLTGKKLTP-RLLD 151

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +     P   N  L +  +++ I++  R  H AL D+ + + V++  +
Sbjct: 152 TVDLGIYLFPREPNYSLENFAQKFAISLQGR--HTALGDAVICAKVFLNFL 200


>gi|226197921|ref|ZP_03793495.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813373|ref|YP_002897824.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|254181036|ref|ZP_04887634.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1655]
 gi|184211575|gb|EDU08618.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1655]
 gi|225930109|gb|EEH26122.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506315|gb|ACQ98633.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           MSHR346]
          Length = 381

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG V +   +    T+   + P  +   P   +L GITD  
Sbjct: 16  AFVDLETTGGSAAEHRITEIGVVVVN--ANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F+ I    ++  + +   ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFADIAGALFERLDGK--LFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|116491119|ref|YP_810663.1| Rad3-related DNA helicase [Oenococcus oeni PSU-1]
 gi|118586913|ref|ZP_01544346.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163]
 gi|290890627|ref|ZP_06553698.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429]
 gi|116091844|gb|ABJ56998.1| 3'-5' exonuclease domain and Rad3-related DNA helicase [Oenococcus
           oeni PSU-1]
 gi|118432640|gb|EAV39373.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163]
 gi|290479755|gb|EFD88408.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429]
          Length = 489

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 11/205 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D+ETT    +   II+IG   + ++   N  FQ  + P G K   + + L GI +E +
Sbjct: 9   IVDLETTAPFKEGGHIIQIGISFVKNWKIINN-FQTMVNP-GVKIPEQIVDLTGIKNEDV 66

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ P F  +     D  +     ++AHN ++D  ++N E  RI    L     +DT+ +A
Sbjct: 67  ENAPYFEDLARMIHDQLS--GTVFVAHNVRYDFPYLNGEFARIKMRRL-RLEYVDTVQLA 123

Query: 131 RRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---MVGGSQINFGFK 186
           +   P  +   L+ L  + GI +     H A  D+   + +++K+   +    Q      
Sbjct: 124 QIVFPTMNSYKLDELVSKLGINLP--RHHRADQDASATAQLFLKIHEHLQEFPQNTLNNL 181

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211
            N  +      +T+  +S  KR  P
Sbjct: 182 INHSKSLLGNTETIFQLSKGKRTFP 206


>gi|167739715|ref|ZP_02412489.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 14]
          Length = 323

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG V +   +    T+   + P  +   P   +L GITD  
Sbjct: 16  AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F+ I    ++  +     ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|126438667|ref|YP_001059957.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia
           pseudomallei 668]
 gi|126218160|gb|ABN81666.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 668]
          Length = 381

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG  +   RI EIG V +   +    T+   + P  +   P   +L GITD  
Sbjct: 16  AFVDLETTGGSAAEHRITEIGVVVVN--ANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F+ I    ++  + +   ++AHNA FD GF+ AE +R          ++ T+ +
Sbjct: 73  VRGAPTFADIAGALFERLDGK--LFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R   P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172


>gi|291300433|ref|YP_003511711.1| exonuclease RNase T and DNA polymerase III [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569653|gb|ADD42618.1| Exonuclease RNase T and DNA polymerase III [Stackebrandtia
           nassauensis DSM 44728]
          Length = 410

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 101/256 (39%), Gaps = 29/256 (11%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             VFD ETTG+    + RIIEI  V   D      T+   L P+ R   P+   +HGI  
Sbjct: 2   YAVFDTETTGIIPGMHHRIIEIAVVLADDEGSIENTWSTLLNPD-RDLGPQ--HIHGIKA 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126
             + D P F  I  +     + +    +AHN  FD+ F++AE +R+      +    + T
Sbjct: 59  RQVIDAPKFGDIAGQLIQMLSGR--TLVAHNLPFDLRFLSAEFERLGHQLTYNHHLGVCT 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS-QINFGF 185
           ++ +      +   L   CK  G+ ++    H AL D+   + +    +      + +  
Sbjct: 117 MNWSTTFLEGASRSLPECCKAAGVQLTG--WHSALSDAEATAALLKHYINAARGGVPWHD 174

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPL----------------FTRITKEELDEHDKTIQ 229
           +    R        V N  + +R+                     R+   E+   D  + 
Sbjct: 175 RLPLSRSCTWPTVPVTNAHVRQRESVPHKPSHGDPFISALVDYLPRVQSSEVS--DPYLA 232

Query: 230 TLGKNAIWDRYISSNQ 245
            L + A+ DRY+S+++
Sbjct: 233 VLDE-ALSDRYLSADE 247


>gi|291535622|emb|CBL08734.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis M50/1]
          Length = 235

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 9/200 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+E TGL++K D I+E+GAV + ++   ++     +     K   +  +L GIT+ 
Sbjct: 4   YVVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDKFGA--ILCQNVKIPEKVTELTGITEA 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++          +F++F  E     +  N  FD GF+       N      +  +DTL 
Sbjct: 62  MVQGGMEKEEAMRQFFEFIGED--IIVGQNVIFDYGFLKQWAVNHNMPLERNA--VDTLK 117

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR+  P   + DL SLC  +G+   +   H A  D++    VY  +     + + G   
Sbjct: 118 LARKFLPKEQKKDLESLCACFGVKREN--AHRAFDDAYETWQVYEALRERYEEESAGDFM 175

Query: 188 NEDRFFKEEKKTVPNISLLK 207
            +   +K +K+T      +K
Sbjct: 176 PKPLLYKAKKQTPATARQIK 195


>gi|157370439|ref|YP_001478428.1| ribonuclease T [Serratia proteamaculans 568]
 gi|157322203|gb|ABV41300.1| ribonuclease T [Serratia proteamaculans 568]
          Length = 226

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V DIET G ++K D ++EI AV L      + + + T    + P  G    P
Sbjct: 24  RFRGFYPVVIDIETAGFNAKTDALLEIAAVTLKMDEDGWLQQDETLHFHVEPFEGANLQP 83

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        ++       +AHNA FD  F+ A 
Sbjct: 84  EALAFNGIDPSNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFLMAA 143

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L   C    I       H AL D+   
Sbjct: 144 AERASLKRNPFHPFATFDTAALSGLVL--GQTVLAKACIAADIPFDSAQAHSALYDTEQT 201

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 202 AQLFCELVNRWKRLG 216


>gi|113460646|ref|YP_718712.1| ribonuclease T [Haemophilus somnus 129PT]
 gi|123327179|sp|Q0I251|RNT_HAES1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|112822689|gb|ABI24778.1| RNAse T [Haemophilus somnus 129PT]
          Length = 218

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 20/199 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGR 53
           + KN+ R    ++ D+ET G +++ D ++E+ A+ L          +      + P  G 
Sbjct: 13  LLKNRFRGFFPVIIDVETAGFNAQTDALLELAAITLKMDENGLLVPDEKCHFHIQPFEGA 72

Query: 54  KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105
             +PE+LK +GI  D  L+   S +   SE +          + Q +  +AHNA FD  F
Sbjct: 73  NINPESLKFNGIDIDNPLRGAISENVAMSELFKMVRHGQKKADCQRSVIVAHNATFDQSF 132

Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A  +R  I ++P  P  I DT +++       +  L   C+   I+   +  H AL D
Sbjct: 133 VMAAAERTKIKRNPFHPFSIFDTATLSGFMF--GQTVLVKGCQVANISFDGKKAHSALYD 190

Query: 164 SHLLSDVYIKMMVGGSQIN 182
           +   ++++  M+    ++ 
Sbjct: 191 AERTAELFCYMVNHLKKLG 209


>gi|305667231|ref|YP_003863518.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170]
 gi|88708165|gb|EAR00403.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170]
          Length = 454

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 9/160 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI A+   D  +    F   + P  +   P  + L GI ++
Sbjct: 2   YTILDIETTGGKYNEEGITEI-AIHKFDGHQVVDKFISLVNPE-KDIQPFVVNLTGINNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  +     +    +++  +AHNA+FD   +  E +R+  +     + + T+ 
Sbjct: 60  MLRTAPKFHEVAKRIVEI--TEDSVLVAHNAQFDYRILRTEFRRLGYNF--ERKTLCTVD 115

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           +++   P      L  L +  GI +S R  H A  D+   
Sbjct: 116 LSKYLLPDAESYSLGKLVRSLGIPMSDR--HRANGDAIAT 153


>gi|224476576|ref|YP_002634182.1| hypothetical protein Sca_1089 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421183|emb|CAL27997.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 895

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 8/169 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +    V D+ETTG     D II+IG +  +   +   ++   +     +  P    L  I
Sbjct: 3   QTTYAVVDLETTGNQKDYDDIIQIG-ITFVKGFEIVGSYHSLIK-TDLEIPPFIQALTSI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+ L   P F+ +  E ++    +++ ++AHN  FD+ F+    ++ N     P ++ID
Sbjct: 61  EDQMLTQAPYFNEVAEEIYELM--KDSVFVAHNVAFDLTFLKKAFKKSNI-TYQPRKVID 117

Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           T+ + +   P      L+ L + + I + +   H A  D+   + + IK
Sbjct: 118 TVELFKIAFPTDKSYQLSELAEYHDIPLEN--AHRADEDAATTAKLMIK 164


>gi|120436992|ref|YP_862678.1| exonuclease domain-containing protein [Gramella forsetii KT0803]
 gi|117579142|emb|CAL67611.1| protein containing exonuclease domain [Gramella forsetii KT0803]
          Length = 507

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 9/169 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  + DIETTG   K +RI EI  + + +    +  +   + P+          L GI D
Sbjct: 5   KFAITDIETTGNGIKGNRITEICVIVVQNGKVIDE-YSSLVNPSQA-IPLYIETLTGIND 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + + P FS I  E       ++  ++AHN  FD   I AE   +++D     + + T+
Sbjct: 63  EMVFNAPQFSEIADEITKI--TKDCIFVAHNVNFDYNIIRAEFASLDRDF--KRKRLCTV 118

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            + ++  P      L ++C    I I H  +H A  D      ++ + +
Sbjct: 119 RLTKKLIPGLFSYSLGNICT--SINIPHIDRHRAKGDCDATVTLFQRCI 165


>gi|238787143|ref|ZP_04630943.1| Ribonuclease T [Yersinia frederiksenii ATCC 33641]
 gi|238724931|gb|EEQ16571.1| Ribonuclease T [Yersinia frederiksenii ATCC 33641]
          Length = 228

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 22/201 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +++ D ++EI AV        +   + T    + P  G    PEAL  +
Sbjct: 30  PVVIDVETAGFNAQTDALLEIAAVTLQMNKEGWLLPDETLHFHVDPFEGANLQPEALAFN 89

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113
           GI         + +  +  +IF        +Q       +AHNA FD  F+ A  +R  +
Sbjct: 90  GIDPTNPLRGAVSEYDALHAIFKAVRKGLKDQGCNRAIIVAHNAHFDHSFVMAAAERASL 149

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ +
Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCE 207

Query: 174 MM-----VGGSQINFGFKTNE 189
           ++     +GG  +  G   +E
Sbjct: 208 LVNRWKKLGGWPVPAGESESE 228


>gi|51596620|ref|YP_070811.1| ribonuclease T [Yersinia pseudotuberculosis IP 32953]
 gi|81825791|sp|Q66A36|RNT_YERPS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|51589902|emb|CAH21534.1| ribonuclease T [Yersinia pseudotuberculosis IP 32953]
          Length = 215

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G ++++D ++EI AV        +   + T    + P  G    PEAL  +
Sbjct: 19  PVVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFN 78

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113
           GI         + +  +  +IF        ++       +AHNA FD  F+ A  +R  +
Sbjct: 79  GIDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ +
Sbjct: 139 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCE 196

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 197 LVNRWKKLG 205


>gi|70726458|ref|YP_253372.1| ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435]
 gi|123660231|sp|Q4L6F9|DING_STAHJ RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|68447182|dbj|BAE04766.1| probable ATP-dependent DNA helicase [Staphylococcus haemolyticus
           JCSC1435]
          Length = 900

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 8/176 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG +  +  +K + T+   +        P    L  I D 
Sbjct: 6   YAVVDLETTGNQLDYDEIIQIG-ITFVSNNKISGTYHSMIR-TDLDIPPFIQALTSIEDT 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  E +    ++   ++AHN  FD+ FI    Q  N D   P +++DTL 
Sbjct: 64  MLEQAPYFHEIAQEIYKQLKDR--VFVAHNVDFDLNFIKKAFQNCNID-FKPKKVLDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           + +  +P      L+ L + + I + +   H A  D+   + + IK      Q+  
Sbjct: 121 LFKIAYPTDKSYQLSELAEAHDIPLDN--AHRADEDATTTALLMIKAFQKFEQLPI 174


>gi|260437725|ref|ZP_05791541.1| DNA polymerase III PolC-type [Butyrivibrio crossotus DSM 2876]
 gi|292809747|gb|EFF68952.1| DNA polymerase III PolC-type [Butyrivibrio crossotus DSM 2876]
          Length = 234

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGL   +++IIE+GAV   D    ++ +   + P G        ++ GI D+
Sbjct: 5   FVAIDLETTGLSPYDNKIIELGAVRYRDGKPVDQ-YNTLINP-GVHIPERITEITGIDDD 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P          +F    N   + HN  FD  FI   L          +  IDTL 
Sbjct: 63  MVSKAPYIDDELDRIMEFIG--NDVILGHNVIFDYTFIAGALA--GHSIEYSAEAIDTLK 118

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            A++  P +   +L  LC+ + I   H   H A  D+   ++VY ++
Sbjct: 119 FAKKVLPANESKNLEHLCEMFDIVTIH---HRAYEDAMSAANVYFRL 162


>gi|225870177|ref|YP_002746124.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047]
 gi|225699581|emb|CAW93205.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. equi
           4047]
          Length = 823

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI +   +  V D+E T        II++G V +++  +   ++Q  + P+    S    
Sbjct: 1   MINEFSQKYAVIDLEATSPGP-TASIIQVGIV-IVEGKEIVDSYQTDINPH-EPLSDHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS +    ++    ++  ++AHN  FD   +   L     D L P
Sbjct: 58  ALTGITDQQLAQAPDFSQVARTIFELI--EDCVFVAHNVTFDANLLAEALFLEGYDLLTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +DT+ +A+  +PS  +  L+ L +   + +S    H A+ D+   ++++IK++    
Sbjct: 116 --RVDTVELAQIFYPSLEKYSLSHLSEVLDLNLSD--AHTAIADAQATANLFIKLLHKIE 171

Query: 180 QI 181
            +
Sbjct: 172 SL 173


>gi|195977857|ref|YP_002123101.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974562|gb|ACG62088.1| probable ATP-dependent helicase DinG [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 821

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI +   +  V D+E T        II++G V +++  +   ++Q  + P+    S    
Sbjct: 1   MINEFSQKYAVIDLEATSPGP-TASIIQVGIV-IIEGKEIVDSYQTDVNPH-EPLSDHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS +    ++    ++  ++AHN  FD   +   L     D L P
Sbjct: 58  ALTGITDQQLAQAPDFSQVARTIFELI--EDCVFVAHNVTFDANLLAEALFLEGYDLLTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +DT+ +A+  +PS  +  L+ L +   + +S    H A+ D+   ++++IK++    
Sbjct: 116 --RVDTVELAQIFYPSLEKYSLSHLSEVLDLNLSD--AHTAIADAQATANLFIKLLHKIE 171

Query: 180 QI 181
            +
Sbjct: 172 SL 173


>gi|194467815|ref|ZP_03073801.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23]
 gi|194452668|gb|EDX41566.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23]
          Length = 283

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 88/167 (52%), Gaps = 11/167 (6%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL     D+II++ A++ +D    + TF   + P+G  N+ ++  ++ I++
Sbjct: 15  YVSVDTETTGLYPMYGDKIIQLSAIKYIDDKLVD-TFDTLINPDGSNNNAKS--VNNISE 71

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             LK++P+F  +  +F +F   ++  W+ HN  FD  F+ +  + +       +  +DTL
Sbjct: 72  SSLKNQPTFDEVIGDFVNFV--EDLPWVGHNLSFDFSFLKS--EELKIASFKKNS-VDTL 126

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            IAR  + +  N L  L K++ I    ++ H +L D+ + + +Y  +
Sbjct: 127 QIARSIYGNKGNKLQQLAKKFNIDY--KNLHNSLYDAQIAASLYQHL 171


>gi|25011356|ref|NP_735751.1| hypothetical protein gbs1312 [Streptococcus agalactiae NEM316]
 gi|24412894|emb|CAD46971.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 604

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 93/173 (53%), Gaps = 10/173 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K R I FDIET GL+S+ DRI+E+GAV   +  K   +++  +       S +  +L+ I
Sbjct: 50  KNRFIAFDIETPGLNSQQDRIVEVGAVLFENG-KVVDSYESLVN-AKVNISADVTRLNNI 107

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           T+  +K+ PS + ++ E  +F  +         AHNAKFD+GF+   L R+  +     +
Sbjct: 108 TNRMIKNAPSENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLGYN--GEIK 165

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +DTLS++R+     RN   N++ + + +   +++ H A  D+ +  ++  K+
Sbjct: 166 YLDTLSLSRKNVKGLRNYKQNTVAEYFNLQ--NKNSHRAKSDAIICGNILTKL 216


>gi|221135181|ref|ZP_03561484.1| ribonuclease T [Glaciecola sp. HTCC2999]
          Length = 212

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 84/204 (41%), Gaps = 24/204 (11%)

Query: 1   MIRKNKMR-------KIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLC 49
           M+   ++R        ++ D+ET G +++ D ++EI AV +          ++     + 
Sbjct: 1   MLSTPELRDRFRHYFPVIIDVETAGFNAQTDALLEIAAVTVRMDEAGMLHPDQEIHYHIN 60

Query: 50  P-NGRKNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAK 100
           P  G    P A++ +GI  D  L+     +                 N Q +  +AHNA 
Sbjct: 61  PFEGANIEPAAIEFNGIKVDCALRGAVDETEAMKGLSKAISKLQKAANCQRSVIVAHNAS 120

Query: 101 FDVGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
           FD+ F+NA L R N  + P  P    DT S+A       +  L   C+   I    +  H
Sbjct: 121 FDMSFVNAALARTNVKRSPFHPFVSFDTTSLAALTL--GQTVLVKACEAANIAFDQKQAH 178

Query: 159 GALLDSHLLSDVYIKMMVGGSQIN 182
           GAL D+   ++++  MM     + 
Sbjct: 179 GALYDAQRTAELFCFMMNRYQSLG 202


>gi|89094681|ref|ZP_01167617.1| ribonuclease T [Oceanospirillum sp. MED92]
 gi|89081027|gb|EAR60263.1| ribonuclease T [Oceanospirillum sp. MED92]
          Length = 209

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 90/211 (42%), Gaps = 25/211 (11%)

Query: 3   RKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRK 54
             N+ R    +V D+ET G +S+ D ++EI AV    +   +   +++F+  + P  G  
Sbjct: 1   MANRFRGFLPVVVDVETAGFNSRTDALLEIAAVTLTMDENGFLMIDQSFEAQVEPFEGAN 60

Query: 55  NSPEALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFI 106
               AL   GI       E + ++ +   IF                 + HNA FD GF+
Sbjct: 61  LEQSALDFTGIDPYDPDREAVPERDAMEEIFKPVRKAIKAHGCKRAVLVGHNASFDQGFV 120

Query: 107 NAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           NA   R  I ++P  P    DT ++        +  L   C+  GI    +  H AL D+
Sbjct: 121 NAAANRADIKRNPFHPFSTFDTATLGGLAF--GQTVLARACQVAGIEFDGKQAHSALYDT 178

Query: 165 HLLSDVYIKMM-----VGGSQINFGFKTNED 190
              ++++  ++     +GG ++   F+ +E+
Sbjct: 179 MKTAELFCLIVNRWKELGGWEMAESFQDDEE 209


>gi|330444105|ref|YP_004377091.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58]
 gi|328807215|gb|AEB41388.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58]
          Length = 249

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+       +  D E TGLD K DRIIEI  V    + +   + +  + P  ++ S E+ 
Sbjct: 1   MVLLKNAVFVCLDCEMTGLDVKKDRIIEIAIVRFT-FERILDSIEFLINPE-KEVSIESQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++H I++  LK++P F++++ +   F  + +   + H+  FD+  +  E++R+ +     
Sbjct: 59  RIHHISNAMLKNQPKFAAVYPKIKAFLKDDD-NIVGHSVGFDLQVLAQEVERLGETFPTK 117

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +IDTL +A+    S  N L SL   + +       H A+ D  +   ++  +      
Sbjct: 118 YHVIDTLRLAKEYGDSPNNSLESLAVHFNVPYDGN--HRAMKDVEINISIFKHLCKRFHT 175

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK 226
           I       + R    +   +  + L K     F+ I    L    K
Sbjct: 176 IE------QIRQVLAKPIKMKYMPLGKHKGRCFSEIPLAYLQWAAK 215


>gi|293363994|ref|ZP_06610730.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           alligatoris A21JP2]
 gi|292552484|gb|EFF41258.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           alligatoris A21JP2]
          Length = 1432

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 7/177 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FDIETTGL  +   IIE GA  + + S   R  Q F+    +  S     L GITD+
Sbjct: 401 YISFDIETTGLSPRYHEIIEFGASIIKNGSIVARE-QFFIK-ASKPLSSFTTNLTGITDK 458

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L ++     +        F  + A  +AHNA+FD+ F+  +L   N   +     +DTL
Sbjct: 459 MLQEEGIELKTALERILKLFENKIA--LAHNAQFDMNFVFQKLLD-NCYAIPSISFVDTL 515

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            I+R   P+  ++ L       GI  S    H A  D+ +L+  +I  +   +Q+N 
Sbjct: 516 MISRIIFPNKSKHRLGDYTSNLGINYSVDDAHRADYDAEILAQAWIASISHLAQLNL 572


>gi|329298346|ref|ZP_08255682.1| ribonuclease T [Plautia stali symbiont]
          Length = 222

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 82/212 (38%), Gaps = 22/212 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G +++ D ++EI A    ++   +   + T    + P  G   +P
Sbjct: 13  RFRGFYPVVIDVETAGFNAQTDALLEIAATTLKMDEDGWLHRDETLHFHVEPFEGAILNP 72

Query: 58  EALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109
           EAL   GI     L+   S        +              A  +AHNA FD  F+ A 
Sbjct: 73  EALAFTGIDPSNPLRGAVSEYEALHAIFKMVRKGTKDSGCNRAIIVAHNATFDHNFLMAT 132

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P    DT +++       +  L   CK  GI       H AL D+   
Sbjct: 133 AERTGMKRNPFHPFATFDTAALSGLVL--GQTVLAKACKAAGIDFDSTQAHSALYDTKQT 190

Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFK 194
           + ++ +++     +GG  +    +  ED    
Sbjct: 191 ATLFCELVNRWKRLGGWPLAVSEEPAEDDASA 222


>gi|332523978|ref|ZP_08400230.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332315242|gb|EGJ28227.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 820

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 13/176 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K   +  V D+E T  ++ +D RII+IG V +++  K   +FQ  + P+  K S   
Sbjct: 1   MTEK-LTKYAVIDLEAT--NAGSDARIIQIGIV-IVEDKKIINSFQTDINPHS-KLSEHI 55

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             L GITD+ L   P FS +  E ++    ++  ++AHN KFD   ++  L     D L 
Sbjct: 56  KSLTGITDQQLATAPEFSQVAGEIFELI--KDCVFVAHNVKFDANLLSEALFFEGFDLLT 113

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           P   +DT+ +A+   P+  + +L  L K   + +SH   H A+ D+   + ++IK+
Sbjct: 114 P--RVDTVELAQVFFPNLEKYNLGHLAKNMDLNLSH--AHTAISDALATAKLFIKI 165


>gi|153949552|ref|YP_001400734.1| ribonuclease T [Yersinia pseudotuberculosis IP 31758]
 gi|166991091|sp|A7FHK6|RNT_YERP3 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|152961047|gb|ABS48508.1| ribonuclease T [Yersinia pseudotuberculosis IP 31758]
          Length = 215

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G ++++D ++EI AV        +   + T    + P  G    PEAL  +
Sbjct: 19  PVVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFN 78

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113
           GI         + +  +  +IF        ++       +AHNA FD  F+ A  +R  +
Sbjct: 79  GIDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ +
Sbjct: 139 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCE 196

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 197 LVNRWKKLG 205


>gi|127512449|ref|YP_001093646.1| ribonuclease T [Shewanella loihica PV-4]
 gi|126637744|gb|ABO23387.1| RNAse T [Shewanella loihica PV-4]
          Length = 257

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 93/217 (42%), Gaps = 21/217 (9%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKN 55
           K++ R    +V D+ET G +++ D ++EI    +++ D      ++T    + P  G   
Sbjct: 31  KHRFRGYFPVVIDVETAGFNAQTDALLEIAVTLLKMDDNGDLVLDKTLHYHIEPFEGANL 90

Query: 56  SPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107
            PEAL  +GI         + +K +F  IF E        N      +AHNA FD GF+ 
Sbjct: 91  EPEALAFNGIDPSNPLRGAVSEKEAFLEIFKEVKKHQKASNCHRSIIVAHNAAFDHGFVT 150

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
             ++R  + + P  P    DT +++          L   C+  GI   ++  H AL D+ 
Sbjct: 151 QAIERNALKRTPFHPFATFDTAALSGLAL--GHTVLAKACEIAGIPFDNKEAHSALYDTE 208

Query: 166 LLSDVYIKMMVGGSQI-NFGFKTNEDRFFKEEKKTVP 201
             ++++  ++     +  +   T  +    +E  + P
Sbjct: 209 RTAELFCHIVNKWKALGGWPVATPSEETGSDEAASEP 245


>gi|189501071|ref|YP_001960541.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1]
 gi|189496512|gb|ACE05060.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1]
          Length = 180

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + R +  D+ETTGL   + DR+IE+ AV +++       F   +  N         K+H
Sbjct: 9   QRERVVAVDVETTGLSPLRGDRVIEVAAVAIVNG-VIEEHFCCLINVN-APIPTVVQKIH 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E L  +    +++ EF +F        IAHNA FD+ FI  ELQ +    L+ S+ 
Sbjct: 67  GITPELLAGEKPPEAVWPEFLNFIGSN--ILIAHNAPFDISFIRNELQLLGLSLLNGSQ- 123

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKM 174
             TL+ +R+K P  + + L+++ +   G        H A  D+ L + ++  +
Sbjct: 124 -CTLAFSRKKFPQLKSHKLDNVARHVLGGMPKGIKLHRASGDALLTAMIWQAI 175


>gi|295135414|ref|YP_003586090.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
 gi|294983429|gb|ADF53894.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
          Length = 282

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 10/166 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD ET    ++      +G VE  +  K  R F   + P     +P A+++HGIT E
Sbjct: 5   FVVFDFET----ARGKNPCSLGMVEYKNGKK-YREFYELINPEVAYFNPFAIQIHGITYE 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ + +FS ++     F   +    +AHNAKFD   +   LQR   D + P     TL 
Sbjct: 60  DVQHERNFSELWDAMLPFI--EGKTLVAHNAKFDNAVLLYSLQRYGID-VPPYASFCTLQ 116

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ARR        L+SL   +   +     H AL D+ +  ++++K+
Sbjct: 117 RARRLVALPSYKLSSLANFF--EVPQLRHHNALEDAFVCGELFLKL 160


>gi|330967688|gb|EGH67948.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 203

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RVAVIDFETTGISPSPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 116

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +ARR  P    + L +L     +  + +  H A+ D+ + +++   + 
Sbjct: 117 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 165


>gi|237801479|ref|ZP_04589940.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|330873519|gb|EGH07668.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|331024338|gb|EGI04395.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 203

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RVAVIDFETTGISPNPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 116

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +ARR  P    + L +L     +  + +  H A+ D+ + +++   + 
Sbjct: 117 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 165


>gi|331018941|gb|EGH98997.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 204

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 4   RVAVIDFETTGISPNPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 117

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +ARR  P    + L +L     +  + +  H A+ D+ + +++   + 
Sbjct: 118 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 166


>gi|152990071|ref|YP_001355793.1| DNA polymerase III subunit epsilon [Nitratiruptor sp. SB155-2]
 gi|151421932|dbj|BAF69436.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2]
          Length = 276

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 8/168 (4%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +   +V DIET G   +  ++IEIGA++    +  +R F+ F+            KL G
Sbjct: 66  QEQEFVVVDIETNGSKPEFSQVIEIGAIKFKGNTIIDR-FESFI--YAEDVPEYISKLTG 122

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I  E L++ PS   +   F +F   Q+A ++AHN +FD  FI+++L+++  + L  +R +
Sbjct: 123 ILQEDLENAPSQKEVLLSFKEFL--QDAVFVAHNVRFDYNFISSKLEQLGLEKLA-NRKL 179

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            ++ +AR+   S R  L  L +  GI  +    H A  D+     +  
Sbjct: 180 CSIDLARKTIESERYGLEFLNETLGINTA--VSHRAYADALTAYKILQ 225


>gi|302554712|ref|ZP_07307054.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
 gi|302472330|gb|EFL35423.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
          Length = 623

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 9/204 (4%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ET+GL    DR++ +  + L         F   L P      P  + +HG+T   L 
Sbjct: 35  VDVETSGLRPGRDRVLSLAILTLDARGNQTGEFATLLNPGC---DPGPVHIHGLTPARLA 91

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P+F  I  +     + +    +AHNA+FD  F+  E   + +  +  SR + TL++ R
Sbjct: 92  GAPTFEEIAPQVGALLSGR--VLVAHNAQFDYDFLAHEFAHV-RSWVPVSRRLCTLALNR 148

Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
               ++ +  L +L   YG+       H A  D  +LS +    +    ++       + 
Sbjct: 149 LVGSATPDLKLGTLAAHYGVR--QERAHDAQDDVRVLSGILRGSLGAAERLGLSLPLLDC 206

Query: 191 RFFKEEKKTVPNISLLKRDKPLFT 214
              ++ +  VP      R+   FT
Sbjct: 207 PPRQDYQPYVPKTPCAYRNPGRFT 230


>gi|238757732|ref|ZP_04618915.1| Ribonuclease T [Yersinia aldovae ATCC 35236]
 gi|238703975|gb|EEP96509.1| Ribonuclease T [Yersinia aldovae ATCC 35236]
          Length = 226

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G ++K D ++EI AV        +   + T    + P  G    PEAL  +
Sbjct: 30  PVVIDVETAGFNAKTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFN 89

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113
           GI         + +  +  +IF        EQ       +AHNA FD  F+ A  +R  +
Sbjct: 90  GIDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNANFDHSFVMAAAERASL 149

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ +
Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCE 207

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 208 LVNRWKKLG 216


>gi|332993984|gb|AEF04039.1| ribonuclease T [Alteromonas sp. SN2]
          Length = 218

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAV--ELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G ++  D ++EI AV  ++ +      ++TF   + P  G    P AL+ +
Sbjct: 17  PVVIDVETAGFNAGTDALLEIAAVTVKMEEDGLIYPDQTFHYHVDPFEGANLEPAALEFN 76

Query: 64  GITDE-FLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI     L+     S                 + Q +  +AHNA FD  F+NA + R N 
Sbjct: 77  GIDPHCALRGAIEESEAMKSLCKGIRKAQKDADCQRSVIVAHNATFDQSFVNAAIARCNI 136

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT S+A       +  L   C+  GI    +  H AL D+   ++++  
Sbjct: 137 KRTPFHPFVSFDTTSLAGLTL--GQTVLVKACRAAGIEFDQKEAHSALYDAQKTTELFCF 194

Query: 174 MMVGGSQIN 182
           M+     + 
Sbjct: 195 MVNRYKALG 203


>gi|318060238|ref|ZP_07978961.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318076974|ref|ZP_07984306.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
          Length = 647

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 11/204 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ET+GL ++ DR++ +  V +    +    F   + P      P  + +HG+T E L 
Sbjct: 19  VDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTLVDPGC---DPGPVDVHGLTRERLS 75

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P+F  I          Q+   +AHNA+FD  F+  E  R  +  L  +R + TL++ R
Sbjct: 76  GAPAFGQIAGRLGAML--QDRVLVAHNAQFDYDFLAHEFARA-RLYLPVTRRLCTLALNR 132

Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN--FGFKTN 188
           +  P +R+  L SL   YG+  +    H AL D+ +L+ ++   +   ++++    F T 
Sbjct: 133 QVDPPTRDMKLGSLAAHYGVPRT--RAHDALDDTRVLAGIFRATLREAARLDLPLPFVTC 190

Query: 189 EDRFFKEEKKTVPNISLLKRDKPL 212
             R   +     P      R+   
Sbjct: 191 PPRQDPQFAPQPPKTPCAYRNPGR 214


>gi|213966786|ref|ZP_03394937.1| exonuclease [Pseudomonas syringae pv. tomato T1]
 gi|301383295|ref|ZP_07231713.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13]
 gi|302062466|ref|ZP_07254007.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40]
 gi|302133448|ref|ZP_07259438.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928636|gb|EEB62180.1| exonuclease [Pseudomonas syringae pv. tomato T1]
          Length = 204

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 4   RVAVIDFETTGISPNPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 117

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +ARR  P    + L +L     +  + +  H A+ D+ + +++   + 
Sbjct: 118 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 166


>gi|332161660|ref|YP_004298237.1| ribonuclease T [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325665890|gb|ADZ42534.1| ribonuclease T [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330864087|emb|CBX74161.1| ribonuclease T [Yersinia enterocolitica W22703]
          Length = 232

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +++ D ++EI AV        +   + T    + P  G    PEAL  +
Sbjct: 30  PVVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFN 89

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113
           GI         + +  +  +IF        EQ       +AHNA FD  F+ A  +R  +
Sbjct: 90  GIDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASL 149

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ +
Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCE 207

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 208 LVNRWKKLG 216


>gi|39996485|ref|NP_952436.1| exonuclease [Geobacter sulfurreducens PCA]
 gi|39983365|gb|AAR34759.1| exonuclease [Geobacter sulfurreducens PCA]
 gi|298505487|gb|ADI84210.1| 3'-to-5' exonuclease, putative [Geobacter sulfurreducens KN400]
          Length = 181

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 9/172 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            KN   +   D+ETTGL     DR++E+ AV L+D  +    F   +    +        
Sbjct: 1   MKNHHLQAAIDVETTGLFPGYGDRVVEVAAV-LVDEGQIVSEFSSLIR-VTKAIPRHVSM 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT++ L D+P    ++    DF     A  +AHNA+FD+ F+  E  R+       S
Sbjct: 59  IHGITNDMLADQPLPEEVYPALGDFIGT--ALLVAHNARFDLAFLRHEFGRLGLSL--NS 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVY 171
           R   TL +ARR+ P  + + L ++ +  +G        H AL D+ L + V+
Sbjct: 115 RSACTLELARRRLPELTDHRLETVYQHLFGAVPEGTRCHRALDDARLTARVW 166


>gi|291287762|ref|YP_003504578.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884922|gb|ADD68622.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
          Length = 205

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 10/176 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPE 58
           I  +++   VFD ETTG+   K  R++EIGAV++      +   +F   + P        
Sbjct: 4   IPFDQLTFTVFDTETTGMSPDKGARLLEIGAVKVKPGLVLDLQDSFCTLINPK-APIPYN 62

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A  +HGI+   + DKP    +   F+ F   +N    AHNA+FD  F++           
Sbjct: 63  AYSVHGISTAMVADKPEIKDVLPGFFSF--TENTIIAAHNARFDCSFVSHHSAECCIVN- 119

Query: 119 DPSRIIDTLSIARRKHPSSR-NDLNSLCKRY--GITISHRSKHGALLDSHLLSDVY 171
             ++I+DT+ +A+  H   +   L +L   +   I +    +H AL D+   + + 
Sbjct: 120 PMTKIVDTVKLAKSAHSGLKSYSLGNLIHYFSMDIPLPDTYRHRALYDAAHTALLL 175


>gi|293396307|ref|ZP_06640585.1| ribonuclease T [Serratia odorifera DSM 4582]
 gi|291421096|gb|EFE94347.1| ribonuclease T [Serratia odorifera DSM 4582]
          Length = 226

 Score =  138 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 22/202 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V DIET G +++ D ++EI AV    +   + + + T    + P  G    P
Sbjct: 24  RFRGFYPVVIDIETAGFNARTDALLEIAAVTLKMDQDGWLQQDETLHFHVEPFEGANLQP 83

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        +Q       +AHNA FD  F+ A 
Sbjct: 84  EALAFNGIDPHNPLRGAVSEYDALHAIFKAVRKGIKDQGCNRAIIVAHNANFDHSFLMAA 143

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P    DT +++       +  L   C   G+       H AL D+   
Sbjct: 144 AERAGLKRNPFHPFATFDTAALSGLVL--GQTVLAKACIAAGMAFDSSQAHSALYDTEQT 201

Query: 168 SDVYIKMM-----VGGSQINFG 184
           + ++ +++     +GG  +  G
Sbjct: 202 ALLFCELVNRWKRLGGWPLAVG 223


>gi|289450465|ref|YP_003475243.1| DNA polymerase III subunit alpha, Gram-positive type [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289185012|gb|ADC91437.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 1495

 Score =  138 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 14/174 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  D+ETTGLD   +R+IEIGA + +  S    + + TF   L P   K     +KL G
Sbjct: 445 YVALDVETTGLDPVKERVIEIGAAKFVRNSSGEYEVSETFHRMLNPE-VKLPEFIMKLTG 503

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPS 121
           IT   +           +  DF    +    AHNA FD+GFI AE  R   IN   L  +
Sbjct: 504 ITQAEVDSGIKPLQAVQDLIDFVG--DLPVCAHNAMFDIGFIRAEGFRTQDINDPKLKFN 561

Query: 122 RI-IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            I IDTL ++    PS S + L+++C    I ++H   H A+ D+     ++ +
Sbjct: 562 PITIDTLRLSVLFWPSLSNHKLDTVCNFLQIDLAHH--HRAVDDAIACGQIFAR 613


>gi|238782582|ref|ZP_04626613.1| Ribonuclease T [Yersinia bercovieri ATCC 43970]
 gi|238796368|ref|ZP_04639877.1| Ribonuclease T [Yersinia mollaretii ATCC 43969]
 gi|238716509|gb|EEQ08490.1| Ribonuclease T [Yersinia bercovieri ATCC 43970]
 gi|238719813|gb|EEQ11620.1| Ribonuclease T [Yersinia mollaretii ATCC 43969]
          Length = 226

 Score =  138 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 22/196 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +++ D ++EI AV        +   + T    + P  G    PEAL  +
Sbjct: 30  PVVIDVETAGFNAQTDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFN 89

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113
           GI         + +  +  +IF        +Q       +AHNA FD  F+ A  +R  +
Sbjct: 90  GIDPTNPLRGAVSEHDALHAIFKAVRKGLKDQGCNRAIIVAHNANFDHSFVMAAAERASL 149

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ +
Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCE 207

Query: 174 MM-----VGGSQINFG 184
           ++     +GG  I  G
Sbjct: 208 LVNRWKKLGGWPIPAG 223


>gi|297578613|ref|ZP_06940541.1| ribonuclease T [Vibrio cholerae RC385]
 gi|297536207|gb|EFH75040.1| ribonuclease T [Vibrio cholerae RC385]
          Length = 249

 Score =  138 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L      +     T    + P  G
Sbjct: 27  LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 86

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                 AL+  GI D F  L+   S      E +    ++        A  +AHNA FD 
Sbjct: 87  ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 146

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+ A  +R      P  P    DT +++       +  L   CK  G+   +R  H AL
Sbjct: 147 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 204

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 205 YDTQKTAELFCTIVNQWKALG 225


>gi|260913082|ref|ZP_05919564.1| ribonuclease T [Pasteurella dagmatis ATCC 43325]
 gi|260632669|gb|EEX50838.1| ribonuclease T [Pasteurella dagmatis ATCC 43325]
          Length = 221

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 90/199 (45%), Gaps = 20/199 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGR 53
           + KN+ R    ++ D+ET G ++K D ++E+ A  V++ D    + ++     + P  G 
Sbjct: 17  LLKNRFRGYFPVIIDVETAGFNAKTDALLELAAITVKMDDNGLLQPDQKCHFHIEPFEGA 76

Query: 54  KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105
             +PE+L+ +GI     L+   S +   +E +          + Q +  +AHNA FD  F
Sbjct: 77  NINPESLQFNGIDIHNPLRGAVSETHAITELFRMVRKGQKDADCQRSIIVAHNAVFDQSF 136

Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           I A  +R    ++P  P  + DT +++       +  L   C+   I    +  H AL D
Sbjct: 137 IMAAAERTGVKRNPFHPFGMFDTATLSGFML--GQTVLVKACQVAKIPFDGKQAHSALYD 194

Query: 164 SHLLSDVYIKMMVGGSQIN 182
           +   ++++  M+     + 
Sbjct: 195 TERTTELFCYMVNHLKSLG 213


>gi|73662598|ref|YP_301379.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642618|sp|Q49XR1|DING_STAS1 RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|72495113|dbj|BAE18434.1| putative ATP-dependent DNA helicase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 900

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +      T+   +     +  P    L  I ++
Sbjct: 6   YAVVDLETTGNQLDYDEIIQIGITFVRENKIIG-TYHSMIK-TDLEIPPFIQALTSIEED 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  I  + +   +     ++AHN  FD+ FI    ++ + +   P +++DTL 
Sbjct: 64  MLNQAPYFHEIAEDIYKQID--GCIFVAHNVAFDLNFIKKSFKQCHINY-RPKKVMDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + +   P      L+ L + +GI +++   H A  D+   + + I
Sbjct: 121 LFKVAFPTDKSYQLSELAEAHGIILNN--AHRADEDAATTAQLMI 163


>gi|167747300|ref|ZP_02419427.1| hypothetical protein ANACAC_02014 [Anaerostipes caccae DSM 14662]
 gi|167653278|gb|EDR97407.1| hypothetical protein ANACAC_02014 [Anaerostipes caccae DSM 14662]
          Length = 234

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 10/170 (5%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR  + FD+ETTGL  + D++IEIGAV++ +     + +   + P  R+ S   ++L GI
Sbjct: 1   MREYVAFDLETTGLSVEEDQVIEIGAVKVKNGKIAGK-YNCIIYPE-REVSDFIIRLTGI 58

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + L            F  F   +    + HN  FD  F+    +R           +D
Sbjct: 59  TRKMLDGGIPMREGVEGFLAF--SEGYPVLGHNLMFDYRFMKTAAKRFRYAFEKEG--VD 114

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           TL  AR          L+SLC+ Y     +++ H A  D+   + V+  M
Sbjct: 115 TLRAARLLLRGLESKKLSSLCEHYH--YVNQAAHRAYDDALATAVVFESM 162


>gi|108807723|ref|YP_651639.1| ribonuclease T [Yersinia pestis Antiqua]
 gi|108811999|ref|YP_647766.1| ribonuclease T [Yersinia pestis Nepal516]
 gi|162420848|ref|YP_001606979.1| ribonuclease T [Yersinia pestis Angola]
 gi|165926445|ref|ZP_02222277.1| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165938652|ref|ZP_02227208.1| ribonuclease T [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010664|ref|ZP_02231562.1| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211013|ref|ZP_02237048.1| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167400761|ref|ZP_02306267.1| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167422151|ref|ZP_02313904.1| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167424940|ref|ZP_02316693.1| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|270490511|ref|ZP_06207585.1| ribonuclease T [Yersinia pestis KIM D27]
 gi|294503612|ref|YP_003567674.1| ribonuclease T [Yersinia pestis Z176003]
 gi|108775647|gb|ABG18166.1| RNAse T [Yersinia pestis Nepal516]
 gi|108779636|gb|ABG13694.1| RNAse T [Yersinia pestis Antiqua]
 gi|162353663|gb|ABX87611.1| ribonuclease T [Yersinia pestis Angola]
 gi|165913526|gb|EDR32147.1| ribonuclease T [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921666|gb|EDR38863.1| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165990366|gb|EDR42667.1| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166208193|gb|EDR52673.1| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166958963|gb|EDR55984.1| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167049614|gb|EDR61022.1| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167056127|gb|EDR65905.1| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|262361655|gb|ACY58376.1| ribonuclease T [Yersinia pestis D106004]
 gi|262365605|gb|ACY62162.1| ribonuclease T [Yersinia pestis D182038]
 gi|270339015|gb|EFA49792.1| ribonuclease T [Yersinia pestis KIM D27]
 gi|294354071|gb|ADE64412.1| ribonuclease T [Yersinia pestis Z176003]
          Length = 226

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G ++++D ++EI AV        +   + T    + P  G    PEAL  +
Sbjct: 30  PVVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFN 89

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113
           GI         + +  +  +IF        ++       +AHNA FD  F+ A  +R  +
Sbjct: 90  GIDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASL 149

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ +
Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCE 207

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 208 LVNRWKKLG 216


>gi|225868805|ref|YP_002744753.1| ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702081|emb|CAW99711.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 821

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI +   +  V D+E T        II++G V +++  +   ++Q  + P+    S    
Sbjct: 1   MINEFSQKYAVIDLEATSPGP-TASIIQVGIV-IIEGKEIVDSYQTDVNPH-EPLSDHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS +    ++    ++  ++AHN  FD   +   L     D L P
Sbjct: 58  ALTGITDQQLAQAPDFSQVARTIFELI--EDCVFVAHNVTFDANLLAEALFLEGYDLLTP 115

Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +DT+ +A+  +P   +  L+ L +   + +S    H A+ D+   ++++IK++    
Sbjct: 116 --RVDTVELAQIFYPCLEKYSLSHLSEVLDLNLSD--AHTAIADAQATANLFIKLLHKIE 171

Query: 180 QI 181
            +
Sbjct: 172 SL 173


>gi|167623615|ref|YP_001673909.1| ribonuclease T [Shewanella halifaxensis HAW-EB4]
 gi|167353637|gb|ABZ76250.1| ribonuclease T [Shewanella halifaxensis HAW-EB4]
          Length = 231

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 20/199 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGA-VELLDYSKT---NRTFQVFLCP-NGR 53
           + KN+ R    +V D+ET G ++K D ++EI   +  +D       ++T    + P  G 
Sbjct: 9   LLKNRFRGYFPVVIDVETAGFNAKTDALLEIAVSMLKMDDEGVLSLDKTLHFNIEPFEGS 68

Query: 54  KNSPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGF 105
              PEAL   GI         + +K +F  IF E               +AHNA FD GF
Sbjct: 69  NLEPEALAFTGIDPTSPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGF 128

Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   ++R  + + P  P    DT ++A          L   C   GI   +R  H AL D
Sbjct: 129 VTQAIERNALKRTPFHPFATFDTAALAGLAI--GHTVLAKACAMAGIAFDNREAHSALYD 186

Query: 164 SHLLSDVYIKMMVGGSQIN 182
           +   ++++  ++     + 
Sbjct: 187 TERTAELFCLIVNRWKALG 205


>gi|330684981|gb|EGG96656.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU121]
          Length = 902

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 8/176 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   +        T+   +        P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDYDDIIQIGITFVRQNKIIG-TYHSMIR-TDLDIPPFIQALTSIEET 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  + +     Q+  ++AHN  FD+ FI    +  N     P R++DTL 
Sbjct: 64  MLEQAPYFKEIAQDIYQQL--QDCVFVAHNVAFDLNFIKKAFKNCNIKY-RPKRVMDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           + +   P      L+ L + + I +++   H A  D+   + + IK      Q+  
Sbjct: 121 LFKIAFPTDKSYQLSELAEAHDIPLNN--AHRADEDATTTAHLMIKAFEKFEQLPL 174


>gi|302184787|ref|ZP_07261460.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           syringae 642]
          Length = 203

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 9/177 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+    + R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRT--REQSFACS 116

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           L +ARR  P    + L +L +   +       H A+ D+ + +++ + +     Q +
Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLP-DTGKAHRAMADAEMAANLTVHLTNELRQTH 172


>gi|12044881|ref|NP_072691.1| DNA polymerase III PolC [Mycoplasma genitalium G37]
 gi|1352298|sp|P47277|DPO3_MYCGE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|3844641|gb|AAC71247.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           genitalium G37]
 gi|166078825|gb|ABY79443.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
           Mycoplasma genitalium JCVI-1.0]
          Length = 1451

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 7/172 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            + +    ++FDIETTGL  + D +IE  A ++ + S+ +   Q FL  + +       +
Sbjct: 409 TKLSDATFVIFDIETTGLHGRYDDVIEFSARKIKNNSEIDHQ-QFFLKID-KPIPKTITE 466

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120
           +  ITDE L+          +  ++ +  +   +AHN   FD+ F+  + ++ N  PL  
Sbjct: 467 ITKITDEMLEGGIDQQQGLEKIRNYLD--DCVMVAHNGINFDLPFLQTQFEKYNIKPL-T 523

Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           + +IDTL ++   +P  S + L+++C +  +       H A  D+  L  V+
Sbjct: 524 NPLIDTLCLSWALNPLFSSHTLSNICSKLKLEFDDERLHRAEYDTEALKKVF 575


>gi|317471044|ref|ZP_07930419.1| exonuclease [Anaerostipes sp. 3_2_56FAA]
 gi|316901485|gb|EFV23424.1| exonuclease [Anaerostipes sp. 3_2_56FAA]
          Length = 234

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 10/170 (5%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR  + FD+ETTGL  + D++IEIGAV++ +     + +   + P  R+ S   ++L GI
Sbjct: 1   MREYVAFDLETTGLSVEEDQVIEIGAVKVKNGKIAGK-YNCIIYPE-REVSDFIIRLTGI 58

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + L            F  F   +    + HN  FD  F+    +R           +D
Sbjct: 59  TRKMLDGGIPMREGVEGFLAF--SEGYPVLGHNLMFDYRFMKTAAKRFRYAFEKEG--VD 114

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           TL  AR          L+SLC+ Y     +++ H A  D+   + V+  M
Sbjct: 115 TLRAARLLLRGLESKKLSSLCEHYH--YVNQAAHRAYDDALATAVVFESM 162


>gi|123442415|ref|YP_001006394.1| ribonuclease T [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|166200024|sp|A1JP36|RNT_YERE8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|122089376|emb|CAL12224.1| ribonuclease T [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 215

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +++ D ++EI AV        +   + T    + P  G    PEAL  +
Sbjct: 19  PVVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFN 78

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113
           GI         + +  +  +IF        EQ       +AHNA FD  F+ A  +R  +
Sbjct: 79  GIDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ +
Sbjct: 139 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCE 196

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 197 LVNRWKKLG 205


>gi|260779364|ref|ZP_05888256.1| ribonuclease T [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605528|gb|EEX31823.1| ribonuclease T [Vibrio coralliilyticus ATCC BAA-450]
          Length = 219

 Score =  138 bits (348), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 85/201 (42%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NG 52
           +  K + R    +V D+ET G ++K D ++EI AV L        +   T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVIDVETAGFNAKTDALLEICAVTLKMDENGELQPASTIHFHVEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                EAL  +GI D F  L+     S    E +    ++        A  +AHNA FD 
Sbjct: 68  ANLEKEALDFNGIHDPFSPLRGAVPESEALKEIYKLVRKEQKAADCSRAIMVAHNATFDH 127

Query: 104 GFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+ A  +R  + + P  P    DT +++   +   +  L   CK  G+   ++  H AL
Sbjct: 128 NFVMAASERSKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMDFDNKEAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 186 YDTLKTAELFCGIVNKWKALG 206


>gi|322376366|ref|ZP_08050859.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. M334]
 gi|321282173|gb|EFX59180.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. M334]
          Length = 816

 Score =  138 bits (348), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 10/175 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +R +   + P+         KL G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIVDR-YTTDVNPH-EPLDAHIKKLTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L   P FS +  + +D    +N  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  RRLAQAPDFSQVARKIFDLV--ENGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            + +   P   +  L  LC+  GI + H   H AL D+   +++ + +    +Q+
Sbjct: 120 ELTQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMAQL 172


>gi|159897533|ref|YP_001543780.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890572|gb|ABX03652.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 282

 Score =  138 bits (348), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 94/173 (54%), Gaps = 9/173 (5%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            + +  ++FD+E+TGLD +   RI E+ A+ +      +R  +  + P  R+  P A  +
Sbjct: 21  LHTIPFVLFDMESTGLDVQIGHRICEMAAMRIQGREIIDRC-EFLVNPQ-REIDPAAFAV 78

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           +GI+ E + + PSF  I+ +    F+E  A  +AHNA FD+GF+ +EL RI+  PL+   
Sbjct: 79  NGISAEMVANAPSFGEIWPKVNKLFHE--AVLVAHNAYFDIGFLTSELSRIDLPPLET-P 135

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +IDTL++ARR   + R +L SL    G        H A+ D   L  V+  ++
Sbjct: 136 VIDTLALARRYITARRYNLTSLATNLG---EKAPSHRAMSDVVALRPVFEHLL 185


>gi|294629410|ref|ZP_06707970.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
 gi|292832743|gb|EFF91092.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
          Length = 653

 Score =  138 bits (348), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 11/205 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ET+GL ++ DRI+ I  +           +   + P      P  + +HG+T E L+
Sbjct: 22  VDVETSGLIARRDRILSIAVLTFGPDGTQTGEYSTLVNPGC---DPGPVHIHGLTAERLR 78

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D P+F  +          Q+   +AHNA+FD  F+  E  R  +  L  ++ + TL++ R
Sbjct: 79  DAPAFEQVAGRIGALL--QDRVMVAHNAQFDYDFLAHEFARA-RLCLPVNQRLCTLALNR 135

Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R  P + +  L SL   YG+       H AL D+ +L+ ++   +   ++++        
Sbjct: 136 RVEPPAADLSLASLAAHYGVP--QTRAHDALDDTRVLAGIFRSSLSEAARLDVPLPLVPC 193

Query: 191 RFFKEEK--KTVPNISLLKRDKPLF 213
              ++ +     P      R+    
Sbjct: 194 PPRQDPRFAPKPPKSPCAYRNPGRP 218


>gi|186895675|ref|YP_001872787.1| ribonuclease T [Yersinia pseudotuberculosis PB1/+]
 gi|186698701|gb|ACC89330.1| ribonuclease T [Yersinia pseudotuberculosis PB1/+]
          Length = 226

 Score =  138 bits (348), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G ++++D ++EI AV        +   + T    + P  G    PEAL  +
Sbjct: 30  PVVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFN 89

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113
           GI         + +  +  +IF        ++       +AHNA FD  F+ A  +R  +
Sbjct: 90  GIDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASL 149

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ +
Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCE 207

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 208 LVNRWKKLG 216


>gi|225021279|ref|ZP_03710471.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC
            33806]
 gi|224946012|gb|EEG27221.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC
            33806]
          Length = 2493

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 9/194 (4%)

Query: 9    KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
              V D+ETTG     DRI+E+  V L D  +    +   + P  R  S  A  +HGIT +
Sbjct: 2099 YAVVDVETTGFS-TADRIVELAIVVLDDDGENLYEWSTLINP-MRDISNGA--IHGITAK 2154

Query: 69   FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127
             +   P+F  +  +       +   ++AHNA FDV  + +E  R+           IDTL
Sbjct: 2155 DVAVAPTFDQVADDVAALL--EGKIFVAHNAIFDVRMLKSEFDRVGLKMAGLADGHIDTL 2212

Query: 128  SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
             +A+   P S   L+S     GIT      H AL D+     +  + ++     +    +
Sbjct: 2213 RLAQNSLPISSRSLDSCLAFMGITNE--QAHSALSDARATGRLLTRFLLDELPNSARSVS 2270

Query: 188  NEDRFFKEEKKTVP 201
                  +  ++  P
Sbjct: 2271 VTGDAMQPSREVYP 2284


>gi|160874893|ref|YP_001554209.1| ribonuclease T [Shewanella baltica OS195]
 gi|160860415|gb|ABX48949.1| ribonuclease T [Shewanella baltica OS195]
 gi|315267130|gb|ADT93983.1| ribonuclease T [Shewanella baltica OS678]
          Length = 223

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 24/201 (11%)

Query: 4   KNKMRK-------IVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-N 51
            NK++        +V D+ET G +S+ D ++EI    +++ +      ++T    + P  
Sbjct: 7   ANKLKYRFRGYFPVVIDVETAGFNSQTDALLEIAVTLLKMDNEGVIGIDKTLHFHIEPFE 66

Query: 52  GRKNSPEALKLHGITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDV 103
           G    PEAL  +GI     L+   S    F E +              +  +AHNA FD 
Sbjct: 67  GANLEPEALAFNGIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDH 126

Query: 104 GFINAELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           GF++  ++R    + P  P    DT ++A          L   C   GI   ++  H AL
Sbjct: 127 GFVSKAIERCDLKRSPFHPFATFDTATLAGLAI--GHTVLAKACIMAGIPFDNKEAHSAL 184

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 185 YDTERTAELFCHIVNRWKSLG 205


>gi|153000260|ref|YP_001365941.1| ribonuclease T [Shewanella baltica OS185]
 gi|304409837|ref|ZP_07391457.1| ribonuclease T [Shewanella baltica OS183]
 gi|307304193|ref|ZP_07583946.1| ribonuclease T [Shewanella baltica BA175]
 gi|166200019|sp|A6WM39|RNT_SHEB8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|151364878|gb|ABS07878.1| ribonuclease T [Shewanella baltica OS185]
 gi|304352355|gb|EFM16753.1| ribonuclease T [Shewanella baltica OS183]
 gi|306913091|gb|EFN43514.1| ribonuclease T [Shewanella baltica BA175]
          Length = 223

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 24/201 (11%)

Query: 4   KNKMRK-------IVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-N 51
            NK++        +V D+ET G +S+ D ++EI    +++ +      ++T    + P  
Sbjct: 7   ANKLKYRFRGYFPVVIDVETAGFNSQTDALLEIAVTLLKMDNEGVIGIDKTLHFHIEPFE 66

Query: 52  GRKNSPEALKLHGITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDV 103
           G    PEAL  +GI     L+   S    F E +              +  +AHNA FD 
Sbjct: 67  GANLEPEALAFNGIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDH 126

Query: 104 GFINAELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           GF++  ++R    + P  P    DT ++A          L   C   GI   ++  H AL
Sbjct: 127 GFVSKAIERCDLKRSPFHPFATFDTATLAGLAI--GHTVLAKACIMAGIPFDNKEAHSAL 184

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 185 YDTERTAELFCHIVNRWKSLG 205


>gi|238792291|ref|ZP_04635926.1| Ribonuclease T [Yersinia intermedia ATCC 29909]
 gi|238728528|gb|EEQ20047.1| Ribonuclease T [Yersinia intermedia ATCC 29909]
          Length = 226

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 22/196 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +++ D ++EI AV        +   + T    + P  G    PEAL  +
Sbjct: 30  PVVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVEPFEGANLQPEALAFN 89

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113
           GI         + +  +  +IF        +Q       +AHNA FD  F+ A  +R  +
Sbjct: 90  GIDPTNPLRGAVSEHDALHAIFKAVRKGLKDQGCNRAIIVAHNANFDHSFVMAAAERASL 149

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ +
Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCE 207

Query: 174 MM-----VGGSQINFG 184
           ++     +GG  I  G
Sbjct: 208 LVNRWKKLGGWPIPAG 223


>gi|305680841|ref|ZP_07403648.1| exonuclease, DNA polymerase III, epsilon subunit family protein
            [Corynebacterium matruchotii ATCC 14266]
 gi|305659046|gb|EFM48546.1| exonuclease, DNA polymerase III, epsilon subunit family protein
            [Corynebacterium matruchotii ATCC 14266]
          Length = 2479

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 9/194 (4%)

Query: 9    KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
              V D+ETTG     DRI+E+  V L D  +    +   + P  R  S  A  +HGIT +
Sbjct: 2085 YAVVDVETTGFS-TADRIVELAIVVLDDDGENLYEWSTLINP-MRDISNGA--IHGITAK 2140

Query: 69   FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127
             +   P+F  +  +       +   ++AHNA FDV  + +E  R+           IDTL
Sbjct: 2141 DVAVAPTFDQVADDVAALL--EGKIFVAHNAIFDVRMLKSEFDRVGLKMAGLADGHIDTL 2198

Query: 128  SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
             +A+   P S   L+S     GIT      H AL D+     +  + ++     +    +
Sbjct: 2199 RLAQNSLPISSRSLDSCLAFMGITNE--QAHSALSDARATGRLLTRFLLDELPNSAQSVS 2256

Query: 188  NEDRFFKEEKKTVP 201
                  +  ++  P
Sbjct: 2257 VTGDAMQPSREVYP 2270


>gi|331002519|ref|ZP_08326037.1| hypothetical protein HMPREF0491_00899 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410335|gb|EGG89769.1| hypothetical protein HMPREF0491_00899 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 235

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 103/232 (44%), Gaps = 16/232 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + +  I  D+ET+G+  ++D+IIE+G +++ D   T+ TF   + P   + + E L+L 
Sbjct: 1   MSTLNYIAIDLETSGIKLRSDKIIEVGLLKIKDSHITD-TFSCLINPEI-EINEEILRLT 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI    L +  S + +     +F   ++ + + HN  FD  FI  E  R     +   + 
Sbjct: 59  GIKKRELYNAESINEVIGHIVEFC--EDYDLLGHNTVFDYSFIKREASRAGL--VFDKKG 114

Query: 124 IDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +DT  + ++  P   + +L   C+ +GI    ++ H A  D++    ++ K+M      N
Sbjct: 115 LDTYKLCKKILPADIKKNLTDACRYFGIE--RKNPHRAFSDAYYTHLLFQKIMENFPDFN 172

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
           F  +  E +  K        I + KR K    ++       +   I  L ++
Sbjct: 173 FSPEHMEVKLKK-------FIPIRKRTKEDLQKLLNCHRIGYKVNIDLLSES 217


>gi|294155324|ref|YP_003559708.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
           MP145]
 gi|291600469|gb|ADE19965.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
           MP145]
          Length = 1447

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 7/180 (3%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   + FDIETTGL  +   +IE GA  + + S  +R  Q F+       S   + L GI
Sbjct: 413 EQEYVCFDIETTGLSPRYHELIEFGATIIKNGSVISRE-QFFIKAKN-SLSAFTINLTGI 470

Query: 66  TDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           TD+ LK++         +    F  + A  +AHN+ FD+ F+  +    NK  +  +  I
Sbjct: 471 TDQMLKNEGLELKPALLKISKLFENRIA--VAHNSTFDMNFLFQKFLD-NKMEIPKTTFI 527

Query: 125 DTLSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           DTL ++R      S++ L +   R GI  +  + H A  D+ +L++ +I  M   ++IN 
Sbjct: 528 DTLVVSRLLFSKDSKHRLENYVGRLGIIYNSDAAHRADYDAEILANAWIPSMNLLAEINI 587


>gi|15641021|ref|NP_230652.1| ribonuclease T [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|227081180|ref|YP_002809731.1| ribonuclease T [Vibrio cholerae M66-2]
 gi|254848136|ref|ZP_05237486.1| ribonuclease T [Vibrio cholerae MO10]
 gi|298498880|ref|ZP_07008687.1| ribonuclease T [Vibrio cholerae MAK 757]
 gi|9655469|gb|AAF94167.1| ribonuclease T [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|227009068|gb|ACP05280.1| ribonuclease T [Vibrio cholerae M66-2]
 gi|254843841|gb|EET22255.1| ribonuclease T [Vibrio cholerae MO10]
 gi|297543213|gb|EFH79263.1| ribonuclease T [Vibrio cholerae MAK 757]
          Length = 243

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L      +     T    + P  G
Sbjct: 27  LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 86

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                 AL+  GI D F  L+   S      E +    ++        A  +AHNA FD 
Sbjct: 87  ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 146

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+ A  +R      P  P    DT +++       +  L   CK  G+   +R  H AL
Sbjct: 147 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 204

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 205 YDTQKTAELFCTIVNQWKALG 225


>gi|145598067|ref|YP_001162143.1| ribonuclease T [Yersinia pestis Pestoides F]
 gi|170024107|ref|YP_001720612.1| ribonuclease T [Yersinia pseudotuberculosis YPIII]
 gi|145209763|gb|ABP39170.1| RNAse T [Yersinia pestis Pestoides F]
 gi|169750641|gb|ACA68159.1| ribonuclease T [Yersinia pseudotuberculosis YPIII]
          Length = 226

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G ++++D ++EI AV        +   + T    + P  G    PEAL  +
Sbjct: 30  PVVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFN 89

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113
           GI         + +  +  +IF        ++       +AHNA FD  F+ A  +R  +
Sbjct: 90  GIDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASL 149

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ +
Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCE 207

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 208 LVNRWKKLG 216


>gi|295695291|ref|YP_003588529.1| DNA polymerase III, epsilon subunit [Bacillus tusciae DSM 2912]
 gi|295410893|gb|ADG05385.1| DNA polymerase III, epsilon subunit [Bacillus tusciae DSM 2912]
          Length = 250

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPN-GRKNSPEALK 61
            +++  +VFD ETTG D + D +IEIGAV + +   + ++TF   +    GR+      +
Sbjct: 53  LDRLTYVVFDTETTGFDWRTDALIEIGAVRVENGQVREDQTFSSLIALEPGRRVPEVVRR 112

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           + G++++ L   P    + S F  F    +A  +AH+A  DV F+N  L +     L P 
Sbjct: 113 ITGLSEQELWRAPKVQDVLSRFMAF--SSDAVLVAHHAGHDVNFLNVPLNQFYGIEL-PR 169

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           R++DT  +ARR  P      L+ L +R  I    R  H AL D+ L + ++
Sbjct: 170 RVVDTAQVARRLWPDTGEATLDYLIERMAIPPLTR--HRALNDALLTARIW 218


>gi|291531551|emb|CBK97136.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium siraeum 70/3]
          Length = 361

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 7/164 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIETTGL   ND IIEIGA+ + D       F   +    +  S    ++ GITD+ L
Sbjct: 11  IVDIETTGLSPDNDNIIEIGALRVRDNKIVAD-FSQLIK-ASKPLSKTISQITGITDDML 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D        S+F  F +  N   + HN  FD  FI+ +      D    +   DTL+  
Sbjct: 69  ADAKELDDTLSDFLRFVD--NDTVVGHNIAFDANFISKKCVAYGLDF--KNDTYDTLAAC 124

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++++P   + L  +  + GI       H AL D +    +   +
Sbjct: 125 KQEYPDVSHKLEDMIIQLGIK-DSGIHHRALADCYHTHSLMTAL 167


>gi|238854632|ref|ZP_04644962.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 269-3]
 gi|260664425|ref|ZP_05865277.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US]
 gi|282932977|ref|ZP_06338374.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 208-1]
 gi|238832422|gb|EEQ24729.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 269-3]
 gi|260561490|gb|EEX27462.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US]
 gi|281303012|gb|EFA95217.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 208-1]
          Length = 936

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 8/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     DRII+ G   + +     +T+   + P           L GI   
Sbjct: 10  FAVVDLETTGTRRGQDRIIQFGCAIIKNRQII-KTYSFLINPE-ADIPQAVQNLTGIKPT 67

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++P F    ++  D    Q+  ++AHN  FD+ F+NAEL   N  P   +R IDT+ 
Sbjct: 68  DVINQPVFKKYAAQIEDIL--QDTVFVAHNINFDLPFLNAELA-ANSFPKLHNRAIDTVE 124

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +++   P+     L+ L   + + + H + H A  D++  + + +K+
Sbjct: 125 LSKIAFPTLPSYRLSDLT--HSLNLKHTNPHQADSDAYATASLLLKI 169


>gi|255689883|ref|ZP_05413558.1| exonuclease [Bacteroides finegoldii DSM 17565]
 gi|260624488|gb|EEX47359.1| exonuclease [Bacteroides finegoldii DSM 17565]
          Length = 183

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 9/171 (5%)

Query: 9   KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            I  D ET TG   K   I E G   + D  K   T    + P G   S   +++HGI  
Sbjct: 6   FIAIDFETATG---KRASICEAGICVVRDG-KIVETRSWLVRPQGNSYSYWNMQIHGIRP 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
               D P F  +++E   +  +     +AHNA FD+G I   L+    + L+      +L
Sbjct: 62  NDTADSPEFPEVWTEISKYLKDIP-VLVAHNAAFDIGCIRHSLELYGMEKLEI-TYYCSL 119

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             AR+ +    N L+ LC ++ I       H A  D+ + + +++K +   
Sbjct: 120 RAARKLYSFGCNSLDYLCDQFRIPY--GQHHRAGDDAEMCARLFLKELEDA 168


>gi|218548753|ref|YP_002382544.1| ribonuclease T [Escherichia fergusonii ATCC 35469]
 gi|218356294|emb|CAQ88912.1| ribonuclease T (RNase T) [Escherichia fergusonii ATCC 35469]
 gi|324113426|gb|EGC07401.1| ribonuclease T [Escherichia fergusonii B253]
 gi|325497162|gb|EGC95021.1| ribonuclease T [Escherichia fergusonii ECD227]
          Length = 215

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    PEAL  +
Sbjct: 19  PVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDNTLHFHVEPFEGANLQPEALAFN 78

Query: 64  GITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113
           GI         +++  +  +IF        +        +AHNA FD GF+ A   R  +
Sbjct: 79  GIDPNDPQRGAVREYDALHAIFKMVRKGIKDTGCNRAIMVAHNATFDHGFLMAAANRASL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L+  C   G+       H AL D+   + ++ +
Sbjct: 139 KRNPFHPFVTFDTAALSGLAL--GQTVLSKACTAAGMAFDSTQAHSALYDTEQTAMLFCE 196

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 197 IVNRWKRLG 205


>gi|297566609|ref|YP_003685581.1| DNA polymerase III subunit epsilon [Meiothermus silvanus DSM 9946]
 gi|296851058|gb|ADH64073.1| DNA polymerase III, epsilon subunit [Meiothermus silvanus DSM 9946]
          Length = 252

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 12/179 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL +  + IIEI  + L    +  + FQ F+ P G    P   +L GIT   
Sbjct: 80  VVLDLETTGLSALENEIIEIAFIRLE--GEKRQVFQRFVNP-GSPIPPFISRLTGITHRD 136

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+  P   ++  E       +++  I  NA FD+GF+     R+       + +IDT++ 
Sbjct: 137 LEGAPDVYTVLEEALPLL--EDSVLIIQNAPFDLGFLRPRFLRLGYK--MDNEVIDTVAW 192

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGSQINFG 184
           ARR  P  S+  L+ L   + +  +  S+H AL D       +     M+  G  +  G
Sbjct: 193 ARRALPGLSKRGLDHLAWAFDLD-TIVSRHRALGDVEATLLVAKEMYYMLTAGKPLALG 250


>gi|328950488|ref|YP_004367823.1| DNA polymerase III, epsilon subunit [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450812|gb|AEB11713.1| DNA polymerase III, epsilon subunit [Marinithermus hydrothermalis
           DSM 14884]
          Length = 248

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 13/179 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL  + D IIE+  + +    +    +   + P GR   P   +L GI    
Sbjct: 77  VVLDLETTGLSPERDEIIEVALIRVEGARRL--EYSRLVNP-GRPIPPRITRLTGIRSGD 133

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D+P   ++  E       + A  +  NA FD+GF+     +++      + +IDT+  
Sbjct: 134 VRDQPDVYTVLEEVVPLL--EGATLVIQNAPFDLGFLRPRFAKLSVTI--RNEVIDTVQW 189

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGGSQINFG 184
           ARR  P   R  L+ L + +   +  RS+H A  D+     V      M+  G     G
Sbjct: 190 ARRALPGMRRRSLDHLIEVF--EVPKRSRHRAFEDAEATLAVAYELYYMLTAGKARALG 246


>gi|183598873|ref|ZP_02960366.1| hypothetical protein PROSTU_02308 [Providencia stuartii ATCC 25827]
 gi|188021081|gb|EDU59121.1| hypothetical protein PROSTU_02308 [Providencia stuartii ATCC 25827]
          Length = 213

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    P AL   
Sbjct: 19  PVVIDVETGGFNAKTDGLLEIAAITLKMDKDGWLSPDETLHFHVEPFEGANLEPAALAFT 78

Query: 64  GITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAELQRIN- 114
           GI     L+   S        +    +         A  +AHNA FD  F+    +R   
Sbjct: 79  GIDPTNPLRGAVSEYEALHAIFKMVRKGMKATDCNRAIIVAHNATFDHSFVMNAAERAGL 138

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C   GI    +  HGAL D++  + ++ +
Sbjct: 139 KRNPFHPFATFDTAALSGLVF--GQTILAKACVAAGIPFDGKQAHGALYDTNRTALLFCE 196

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 197 LVNKWKKLG 205


>gi|146311450|ref|YP_001176524.1| ribonuclease T [Enterobacter sp. 638]
 gi|166991090|sp|A4W9U3|RNT_ENT38 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|145318326|gb|ABP60473.1| RNAse T [Enterobacter sp. 638]
          Length = 224

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLTPDTTLHFHVDPFEGANLQP 72

Query: 58  EALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAE 109
           EAL  +GI     L+   S        +    +         A  +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPHNPLRGAVSEYDALHAIYKMVRKGMKDSNCNRAIMVAHNATFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L+  C   GI       H AL D+   
Sbjct: 133 SERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACITAGIDFDGNQAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           ++++ +++    ++ 
Sbjct: 191 AELFCEIVNRWKRLG 205


>gi|320539160|ref|ZP_08038831.1| ribonuclease T (RNase T) [Serratia symbiotica str. Tucson]
 gi|320030798|gb|EFW12806.1| ribonuclease T (RNase T) [Serratia symbiotica str. Tucson]
          Length = 248

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 22/202 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++EI AV L      + + + T    + P  G    P
Sbjct: 45  RFRGFYPVVIDVETAGFNAKTDALLEIAAVTLKMDEGGWLQQDETLHFHVEPFEGANLQP 104

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF         +       +AHNA FD  F+ A 
Sbjct: 105 EALAFNGIDPHNPLRGAVSEYDALHAIFKTVRAGIKHRGCNRAIIVAHNANFDHSFLMAA 164

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L   C   G+       H AL D+   
Sbjct: 165 AERASLKRNPFHPFATFDTAALSGLVL--GQTVLAKACTAAGMPFDSSQAHSALYDTEQT 222

Query: 168 SDVYIKMM-----VGGSQINFG 184
           + ++ +++     +GG  +  G
Sbjct: 223 ALLFCELVNRWKRLGGWPLTLG 244


>gi|254291880|ref|ZP_04962663.1| ribonuclease T [Vibrio cholerae AM-19226]
 gi|150422240|gb|EDN14204.1| ribonuclease T [Vibrio cholerae AM-19226]
          Length = 224

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L      +     T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                 AL+  GI D F  L+   S      E +    ++        A  +AHNA FD 
Sbjct: 68  ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 127

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+ A  +R      P  P    DT +++       +  L   CK  G+   +R  H AL
Sbjct: 128 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 186 YDTQKTAELFCTIVNQWKALG 206


>gi|229505395|ref|ZP_04394905.1| ribonuclease T [Vibrio cholerae BX 330286]
 gi|229510935|ref|ZP_04400414.1| ribonuclease T [Vibrio cholerae B33]
 gi|229512432|ref|ZP_04401905.1| ribonuclease T [Vibrio cholerae TMA 21]
 gi|229518056|ref|ZP_04407500.1| ribonuclease T [Vibrio cholerae RC9]
 gi|229529900|ref|ZP_04419290.1| ribonuclease T [Vibrio cholerae 12129(1)]
 gi|229608414|ref|YP_002879062.1| ribonuclease T [Vibrio cholerae MJ-1236]
 gi|255744788|ref|ZP_05418739.1| ribonuclease T [Vibrio cholera CIRS 101]
 gi|262151277|ref|ZP_06028413.1| ribonuclease T [Vibrio cholerae INDRE 91/1]
 gi|262167159|ref|ZP_06034872.1| ribonuclease T [Vibrio cholerae RC27]
 gi|14548237|sp|Q9KT97|RNT_VIBCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|229333674|gb|EEN99160.1| ribonuclease T [Vibrio cholerae 12129(1)]
 gi|229344771|gb|EEO09745.1| ribonuclease T [Vibrio cholerae RC9]
 gi|229350513|gb|EEO15460.1| ribonuclease T [Vibrio cholerae TMA 21]
 gi|229350900|gb|EEO15841.1| ribonuclease T [Vibrio cholerae B33]
 gi|229357618|gb|EEO22535.1| ribonuclease T [Vibrio cholerae BX 330286]
 gi|229371069|gb|ACQ61492.1| ribonuclease T [Vibrio cholerae MJ-1236]
 gi|255737819|gb|EET93213.1| ribonuclease T [Vibrio cholera CIRS 101]
 gi|262024380|gb|EEY43068.1| ribonuclease T [Vibrio cholerae RC27]
 gi|262030968|gb|EEY49596.1| ribonuclease T [Vibrio cholerae INDRE 91/1]
          Length = 224

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L      +     T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                 AL+  GI D F  L+   S      E +    ++        A  +AHNA FD 
Sbjct: 68  ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 127

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+ A  +R      P  P    DT +++       +  L   CK  G+   +R  H AL
Sbjct: 128 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 186 YDTQKTAELFCTIVNQWKALG 206


>gi|223937241|ref|ZP_03629147.1| DNA-directed DNA polymerase [bacterium Ellin514]
 gi|223894026|gb|EEF60481.1| DNA-directed DNA polymerase [bacterium Ellin514]
          Length = 199

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            ++FD+ETTGL S  D II+I AV + +     + +F  ++ P GR  S       GIT+
Sbjct: 5   YVIFDLETTGLSSYQDEIIQIAAVRMSNGVVCSSDSFFSYVNP-GRSISSFITSYTGITN 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126
           + + D P   ++  +F  +  +  A  IAHN  +FD+ F++A   R N  P       D+
Sbjct: 64  QDVGDAPRVGTVLKDFSRYAGK--ATLIAHNGHRFDMKFLHAGCSR-NALPTRAVNYHDS 120

Query: 127 LSIARRKH---PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + ++R      P   + L+S+  R  I+     +H A  D  LL++   KM
Sbjct: 121 IYLSRLVWGKCPGG-HGLDSVLNRLQISNHGVRRHDARGDVELLAEAVEKM 170


>gi|238762495|ref|ZP_04623465.1| Ribonuclease T [Yersinia kristensenii ATCC 33638]
 gi|238699140|gb|EEP91887.1| Ribonuclease T [Yersinia kristensenii ATCC 33638]
          Length = 226

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +++ D ++EI AV        +   + T    + P  G    PEAL  +
Sbjct: 30  PVVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVEPFEGANLQPEALAFN 89

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113
           GI         + +  +  +IF        ++       +AHNA FD  F+ A  +R  +
Sbjct: 90  GIDPSNPLRGAVSEHDALHAIFKAVRKGLKDKGCNRAIIVAHNAHFDHSFVMAAAERASL 149

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ +
Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCE 207

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 208 LVNRWKKLG 216


>gi|126173968|ref|YP_001050117.1| ribonuclease T [Shewanella baltica OS155]
 gi|217973711|ref|YP_002358462.1| ribonuclease T [Shewanella baltica OS223]
 gi|166200018|sp|A3D3D5|RNT_SHEB5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|125997173|gb|ABN61248.1| RNAse T [Shewanella baltica OS155]
 gi|217498846|gb|ACK47039.1| ribonuclease T [Shewanella baltica OS223]
          Length = 223

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 24/201 (11%)

Query: 4   KNKMRK-------IVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-N 51
            NK++        +V D+ET G +S+ D ++EI    +++ +      ++T    + P  
Sbjct: 7   ANKLKYRFRGYFPVVIDVETAGFNSQTDALLEIAVTLLKMDNEGVIGIDKTLHFHIEPFE 66

Query: 52  GRKNSPEALKLHGITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDV 103
           G    PEAL  +GI     L+   S    F E +              +  +AHNA FD 
Sbjct: 67  GANLEPEALAFNGIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDH 126

Query: 104 GFINAELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           GF++  ++R    + P  P    DT ++A          L   C   GI   ++  H AL
Sbjct: 127 GFVSKAIERCDLKRSPFHPFATFDTATLAGLAI--GHTVLAKACIMAGIPFDNKEAHSAL 184

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 185 YDTERTAELFCHIVNRWKSLG 205


>gi|269215783|ref|ZP_06159637.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122]
 gi|269130733|gb|EEZ61809.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122]
          Length = 291

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTGL+   D IIE+ A+ +    +T+  FQ  +   G + S    KL G++  
Sbjct: 128 YVVVDIETTGLNPNKDEIIELAAIRVRGGRETD-AFQCLVRCGG-ELSDAIAKLTGLSHS 185

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L  +     +    F +F ++     +AHNA+FD+GFI +  + ++ D  D +  +DTL
Sbjct: 186 RLMAEGLILENALMNFLEFVSDD--LIVAHNAEFDIGFIQSACEELDWDDFD-NDYLDTL 242

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++AR+K P  S + L+SL +R  + + +R  H AL D  L   + +K+
Sbjct: 243 ALARKKLPQISDHRLSSLAER--LHLENRQPHRALSDCRLTHCLLVKL 288


>gi|210634765|ref|ZP_03298293.1| hypothetical protein COLSTE_02220 [Collinsella stercoris DSM 13279]
 gi|210158705|gb|EEA89676.1| hypothetical protein COLSTE_02220 [Collinsella stercoris DSM 13279]
          Length = 975

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 12/177 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGL  + + +IEI A  L    +    F  F+ P+      E  +L  IT+  
Sbjct: 48  VVLDTETTGLSHRENELIEIAAARLR-GREVVERFDTFIKPH-ALIPAEITELTSITNAD 105

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   PS     +   DF     A  IAHNA FD GFI A    ++         ID+L++
Sbjct: 106 VAHAPSAEEAVARLADFVG--GAPVIAHNAAFDRGFIEA----VSGGAEVTDIWIDSLAL 159

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +R   P  S + L S+ + +G +      H A  D   L  V+  ++     +  G 
Sbjct: 160 SRIALPRLSSHKLASMAELFGCS---GVSHRANADVEALCGVWRILLCALDDLPSGL 213


>gi|330969506|gb|EGH69572.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 203

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 9/177 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+    + R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRT--REQSFACS 116

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           L +ARR  P    + L +L +   +       H A+ D+ + +++   +     Q +
Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLP-DTGKAHRAMADAEMAANLTAHLTNELRQTH 172


>gi|330952959|gb|EGH53219.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae Cit 7]
          Length = 203

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 9/177 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+    + R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRT--REQSFACS 116

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           L +ARR  P    + L +L +   +       H A+ D+ + +++   +     Q +
Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLP-DTGKAHRAMADAEMAANLTAYLTNELRQTH 172


>gi|330976913|gb|EGH76936.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 203

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 9/177 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+    + R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIERT--REQSFACS 116

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           L +ARR  P    + L +L +   +       H A+ D+ + +++   +     Q +
Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLP-DTGKAHRAMADAEMAANLTAYLTNELRQTH 172


>gi|121728127|ref|ZP_01681163.1| ribonuclease T [Vibrio cholerae V52]
 gi|121629595|gb|EAX62017.1| ribonuclease T [Vibrio cholerae V52]
          Length = 212

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 18/190 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +++ D ++EI AV L      +     T    + P  G      AL+  
Sbjct: 7   PVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFT 66

Query: 64  GITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQRIN 114
           GI D F  L+   S      E +    ++        A  +AHNA FD  F+ A  +R  
Sbjct: 67  GIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCK 126

Query: 115 KD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               P  P    DT +++       +  L   CK  G+   +R  H AL D+   ++++ 
Sbjct: 127 LKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFC 184

Query: 173 KMMVGGSQIN 182
            ++     + 
Sbjct: 185 TIVNQWKALG 194


>gi|323496850|ref|ZP_08101887.1| ribonuclease T [Vibrio sinaloensis DSM 21326]
 gi|323318109|gb|EGA71083.1| ribonuclease T [Vibrio sinaloensis DSM 21326]
          Length = 220

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L      +     T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLKMDENGDLQPASTIHFHVEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                EAL   G+ D F  L+     S    E +    ++        A  +AHNA+FD 
Sbjct: 68  ANIEKEALDFIGLRDPFSPLRGAIPESEALKEIYKLVRKEQKAADCSRAIIVAHNAQFDH 127

Query: 104 GFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+    +R  + + P  P    DT +++   +   +  L   CK  G+   ++  H AL
Sbjct: 128 SFVMQASERSKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMDFDNKEAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 186 YDTQKTAELFCGIVNKWKALG 206


>gi|253573313|ref|ZP_04850656.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846841|gb|EES74846.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 247

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 9/181 (4%)

Query: 6   KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +++  VFD+ETTG      D I+  GA+++     T+  +     P  +      ++L G
Sbjct: 60  ELKTAVFDLETTGFHYHYGDEILSFGAIKVEGERITDEVYYSLAKPACQ-IPERIIELTG 118

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT E  +  PS      EF  F +++    +AH +  D  F++  L +  K  L   R++
Sbjct: 119 ITPEMAQSAPSLLEALREFMAFVDDR--VLVAHGSAHDKAFLDVALWKTTKAHLG-HRVL 175

Query: 125 DTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           DT+ IAR+  P  R    L+     Y I ++ R  H AL DS + + ++  ++    + N
Sbjct: 176 DTMMIARKLEPDRRISGSLDEWLAVYEIPVTKR--HHALEDSKMTAQLWTALIQRLKEQN 233

Query: 183 F 183
            
Sbjct: 234 V 234


>gi|108801863|ref|YP_642060.1| DNA polymerase III subunit epsilon [Mycobacterium sp. MCS]
 gi|119871016|ref|YP_940968.1| DNA polymerase III subunit epsilon [Mycobacterium sp. KMS]
 gi|108772282|gb|ABG11004.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
 gi|119697105|gb|ABL94178.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
          Length = 330

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 9/164 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RI+ + A+ + D     ++    L P      P    +HG+T E
Sbjct: 17  WAVVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATLLNPG---VDPGPTHVHGLTAE 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  + ++  +    +    +AHN  FD  F+ AE + +  + L    ++ T+ 
Sbjct: 74  MLEGAPRFGDVVADLAELL--RGRTLVAHNVGFDYSFLTAEAELVGAE-LPIDSVMCTVE 130

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +ARR    + N  L +L   +G+       H AL D+ +L+ + 
Sbjct: 131 LARRLDLGTENLRLETLAAHWGVP--QLKPHDALDDAQVLAQIL 172


>gi|66047527|ref|YP_237368.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           syringae B728a]
 gi|63258234|gb|AAY39330.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           syringae B728a]
          Length = 204

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 9/177 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+    + R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 4   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRT--REQSFACS 117

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           L +ARR  P    + L +L +   +       H A+ D+ + +++   +     Q +
Sbjct: 118 LLLARRLMPGAPNHKLGTLTRYARLP-DTGKAHRAMADAEMAANLTAHLTNELRQTH 173


>gi|170761478|ref|YP_001786710.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408467|gb|ACA56878.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 855

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 95/168 (56%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+E+TG+++  D I++I  +++ +  +   +FQ FL P  +K+  ++  +HG +D+F
Sbjct: 496 VVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLIP--KKSVGDSYLVHGFSDQF 553

Query: 70  LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK+   +   +  +F +F   ++   + HN  FD+  +N+EL+R++ +        DTL 
Sbjct: 554 LKENGENKKVVLKDFLEFI--KDTVIVGHNVTFDISILNSELERLSLEKASFKTYYDTLD 611

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IARR +PS + + L +L K +      +S H A+ D     DV + M+
Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657


>gi|289675841|ref|ZP_06496731.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           syringae FF5]
          Length = 204

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 9/177 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+    + R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 4   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIERT--REQSFACS 117

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           L +ARR  P    + L +L +   +       H A+ D+ + +++   +     Q +
Sbjct: 118 LLLARRLMPGAPNHKLGTLTRYARLP-DTGKAHRAMADAEMAANLTAYLTNELRQTH 173


>gi|144900310|emb|CAM77174.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 459

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 83/176 (47%), Gaps = 8/176 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL 60
              +++  +V D ETTGLD+  D I+ +GAV              + + P GR+    A 
Sbjct: 250 TLLSQLPVVVLDTETTGLDAARDAIVSVGAVRCHGSRIYRAAMLDLLVNP-GRRIPARAT 308

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI +  +  KP  ++   E     ++  A  + H   FD+  +    +R+  D   P
Sbjct: 309 AIHGIDESMVAGKPDLAASLPEIAAIMDK--AVVVGHQIGFDLALLRHGTERLGLDWTPP 366

Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R +D L ++    P    ++++    R G+ IS R  H AL D+ + ++++++++
Sbjct: 367 PR-LDILLLSAALAPDESGHEIDDQAARMGVNISGR--HTALGDALVTAELWVRLI 419


>gi|329731357|gb|EGG67723.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 784

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +    + T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +  E +     ++  ++AHN  FD+ FI    +  N     P ++IDTL 
Sbjct: 64  MLQQAPYFNQVAQEIYGKI--KDCIFVAHNVDFDLNFIKKAFKDYNIQY-RPKKVIDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I +   P      L+ L + +GIT+++   H A  D+   + + I
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163


>gi|323492356|ref|ZP_08097509.1| ribonuclease T [Vibrio brasiliensis LMG 20546]
 gi|323313403|gb|EGA66514.1| ribonuclease T [Vibrio brasiliensis LMG 20546]
          Length = 219

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 82/201 (40%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G ++K D ++EI AV L      +     T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVIDVETAGFNAKTDALLEICAVTLKMDENGDLVPASTIHFHVEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                EAL  +GI D F  L+   +      E +    ++        A  +AHNA FD 
Sbjct: 68  ANLEKEALDFNGIRDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIMVAHNANFDH 127

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+    +R      P  P    DT +++   +   +  L   CK  G+   ++  H AL
Sbjct: 128 SFVMEASERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNKEAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 186 YDTQKTAELFCGIVNKWKALG 206


>gi|153823922|ref|ZP_01976589.1| ribonuclease T [Vibrio cholerae B33]
 gi|126518562|gb|EAZ75785.1| ribonuclease T [Vibrio cholerae B33]
          Length = 227

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L      +     T    + P  G
Sbjct: 11  LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 70

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                 AL+  GI D F  L+   S      E +    ++        A  +AHNA FD 
Sbjct: 71  ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 130

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+ A  +R      P  P    DT +++       +  L   CK  G+   +R  H AL
Sbjct: 131 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 188

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 189 YDTQKTAELFCTIVNQWKALG 209


>gi|330961648|gb|EGH61908.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 203

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+    + R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RIAVIDFETTGISPNHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 116

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +ARR  P    + L +L     +  + +  H A+ D+ + +++   + 
Sbjct: 117 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 165


>gi|28871797|ref|NP_794416.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28855049|gb|AAO58111.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 204

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 4   RVAVIDFETTGISPNPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 117

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +ARR  P    + L +L     +  + +  H A+ D+ + +++   + 
Sbjct: 118 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAIADAEMAANLTAYLT 166


>gi|330938176|gb|EGH41873.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 203

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 9/177 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+    + R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIERT--REQSFACS 116

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           L +ARR  P    + L +L +   +       H A+ D+ + +++   +     Q +
Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLP-DTGKAHRAMADAEMAANLTAYLTNELRQTH 172


>gi|229523203|ref|ZP_04412610.1| ribonuclease T [Vibrio cholerae TM 11079-80]
 gi|229339566|gb|EEO04581.1| ribonuclease T [Vibrio cholerae TM 11079-80]
          Length = 224

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L      +     T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTVHFHVEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                 AL+  GI D F  L+   S      E +    ++        A  +AHNA FD 
Sbjct: 68  ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 127

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+ A  +R      P  P    DT +++       +  L   CK  G+   +R  H AL
Sbjct: 128 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 186 YDTQKTAELFCTIVNQWKALG 206


>gi|313889930|ref|ZP_07823570.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121696|gb|EFR44795.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 820

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 12/175 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + +   +  V D+E T  ++ +D RII+IG V + +    +R FQ  + P+  K S    
Sbjct: 1   MTEQLTKYAVIDLEAT--NAGSDARIIQIGIVIVENKKIIDR-FQTDINPHS-KLSEHIK 56

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS + S+ ++    ++  ++AHN KFD   +   L     + L P
Sbjct: 57  SLTGITDQQLASAPEFSQVASQIFELI--KDCVFVAHNVKFDANLLAEALFFEGFELLTP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT+ +A+   P+  + +L  L K   + ++H   H A+ D+   + ++IK+
Sbjct: 115 --RMDTVELAQVFFPNLEKYNLGHLAKNMDLHLAH--AHTAIDDALATAKLFIKI 165


>gi|328956370|ref|YP_004373703.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2]
 gi|328456694|gb|AEB07888.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2]
          Length = 977

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 21/222 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGL  ++D +IEI A  +L   +    F+ F+ P+ +    E ++L GI D  
Sbjct: 50  VVLDTETTGLSRQDDELIEISA-AVLSGREVTERFETFVRPS-KPIPAEIVELTGIRDAD 107

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D P  +    +   F   +    IAHNA FD  FI A    +          ID+L++
Sbjct: 108 VRDAPPATQAVRDLARFVGGR--PVIAHNAAFDRAFIEA----VPGGSDASDIWIDSLAL 161

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +R   P  + + L+SL + +G        H A  D   L  V+  ++   + +  G    
Sbjct: 162 SRIALPRLASHRLSSLAETFGCA---DVSHRAGDDVRALCGVWRILLCALADLPAGL--- 215

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
                +      P+++   R  P+F+ I  E   EH    Q+
Sbjct: 216 ----LRRLADMHPDVAWSYR--PIFSHIASENPGEHFSLAQS 251


>gi|168179984|ref|ZP_02614648.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum NCTC 2916]
 gi|182669095|gb|EDT81071.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum NCTC 2916]
          Length = 855

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 95/168 (56%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+E+TG+++  D I++I  +++ +  +   +FQ FL P  +K+  ++  +HG +D+F
Sbjct: 496 VVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLTP--KKSVGDSYLVHGFSDQF 553

Query: 70  LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK+   +   +  +F +F   ++   + HN  FD+  +N+EL+R++ +        DTL 
Sbjct: 554 LKENGENKKVVLKDFLEFI--KDTVIVGHNVAFDISILNSELERLSLEKASFKTYYDTLD 611

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IARR +PS + + L +L K +      +S H A+ D     DV + M+
Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657


>gi|187251744|ref|YP_001876226.1| DNA polymerase III subunit epsilon [Elusimicrobium minutum Pei191]
 gi|186971904|gb|ACC98889.1| DNA polymerase III, epsilon subunit [Elusimicrobium minutum Pei191]
          Length = 201

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 14/186 (7%)

Query: 1   MIRKNKM----RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRK 54
           MI + K+    +    D ETTGL      R+ EI  +   + +   +  +   + P    
Sbjct: 1   MILREKLIHEVKFAFLDTETTGLSPYDGARLCEIAVIT--NGALIAKSEYGTIINPRCV- 57

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            S E + +HGIT+E     P F  I           ++  + HNA FD+ F+ AE  R  
Sbjct: 58  ISQEVINIHGITNEMAAQAPYFEDIAPLLIGLL--TDSVIVCHNADFDIPFLAAEFARCG 115

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +  + I+DTL  AR+     +N+L  +    G  +S+   H A+ D+ +   V+   
Sbjct: 116 LR-MPQTVILDTLKFARKNGNFKKNNLGFIVSELG--LSNEGWHRAMADAKMTEKVFYHF 172

Query: 175 MVGGSQ 180
           +    Q
Sbjct: 173 LAAFKQ 178


>gi|227328518|ref|ZP_03832542.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 223

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 22/213 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++E+ AV    +   + K + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLKPDETLHFHVEPFEGAILEP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
            AL  +GI         + +  +   IF        +Q       +AHNA FD  F+ A 
Sbjct: 73  AALAFNGIDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAA 132

Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P    DT +++       +  L   C   GI       H AL D++  
Sbjct: 133 AERCSLKRNPFHPFATFDTAALSGLVL--GQTVLAKACITAGIAFDSSQAHSALYDTNQT 190

Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKE 195
           + ++ +++     +GG  I     + ED   ++
Sbjct: 191 ALLFCELVNRWKRLGGWPIALEENSLEDASAED 223


>gi|254426843|ref|ZP_05040550.1| ribonuclease T [Alcanivorax sp. DG881]
 gi|196193012|gb|EDX87971.1| ribonuclease T [Alcanivorax sp. DG881]
          Length = 228

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 17/196 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNS 56
           +R      +V D+ET G +S+ D ++EI AV    +     + +   Q  + P  G    
Sbjct: 16  LRFRGFLPVVIDVETGGFNSQTDALLEIAAVLIEMDAQGNLRPSTRIQFHVDPFPGANLE 75

Query: 57  PEALKLHGITD-EFLKDKPSFSS----IFSEFWDFFNEQNA---EWIAHNAKFDVGFINA 108
             AL   GI     L+   S  +    +F        +        + HN+ FD GF+NA
Sbjct: 76  QAALDFTGIDPSNPLRGAVSEETALKGVFEPIRKAVKQHGCSRAVLVGHNSFFDQGFLNA 135

Query: 109 ELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
              R  I + P  P    DT ++A   +   +  L   C+  GI  S R  H AL D+  
Sbjct: 136 ATDRADIKRSPFHPFSSFDTATLAGLVY--GQTVLAKACEAAGIRFSQREAHSALYDATR 193

Query: 167 LSDVYIKMMVGGSQIN 182
            ++++  M+     + 
Sbjct: 194 TAELFCSMVNRFKTLG 209


>gi|312795413|ref|YP_004028335.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454]
 gi|312167188|emb|CBW74191.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454]
          Length = 281

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 10/165 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              D+ETTG     DRI E+G +E+       R +   + P  +   P   +L GITD  
Sbjct: 46  AFVDLETTGGRPGLDRITEVGVIEVDRDG--VRRWSTLVDP-LQPIPPFVQQLTGITDAM 102

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P+F ++ +E     +     +IAHNA+FD GF+    ++I         ++ T+ +
Sbjct: 103 VRGAPTFDALAAELARRLD--GKLFIAHNARFDHGFLKKAFEQIGIRFDPD--VLCTVRL 158

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +R   P  SR+ L++L +R  ++   R  H AL D+ L+   + +
Sbjct: 159 SRALFPRESRHGLDALAQRLDLSACGR--HRALADADLVWQFWQR 201


>gi|325579056|ref|ZP_08149012.1| ribonuclease T [Haemophilus parainfluenzae ATCC 33392]
 gi|325159291|gb|EGC71425.1| ribonuclease T [Haemophilus parainfluenzae ATCC 33392]
          Length = 229

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 93/219 (42%), Gaps = 25/219 (11%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L          ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDGNGNLHPDQKCHFHIEPFEGANI 73

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +            Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDAECQRSIIVAHNAAFDQSFVM 133

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R    ++P  P  + DT ++A       +  L   C+   I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTATLAGFMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMMVGGSQINFGF----KTNEDRFFKEEKKTV 200
             ++++  M+    ++  GF    +TNE     E +  +
Sbjct: 192 RTAELFCYMVNHLKELG-GFPHIAQTNETEKTAENQIAL 229


>gi|226948601|ref|YP_002803692.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A2 str. Kyoto]
 gi|226844461|gb|ACO87127.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A2 str. Kyoto]
          Length = 855

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 96/175 (54%), Gaps = 8/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +    +VFD+E+TG++   D I++I  +++ +  +   +FQ FL P  +K+  ++  +
Sbjct: 489 ELDNENVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIP--KKSVGDSYLV 546

Query: 63  HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           HG +D+FLK+   +   +  +F +F   ++   + HN  FD+  +N+EL+R++ +  +  
Sbjct: 547 HGFSDQFLKENGENKKVVLKDFLEFI--KDTVIVGHNVTFDISILNSELERLSLEKANFK 604

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              DTL IARR +PS + + L +L K +      +S H A+ D     DV + M+
Sbjct: 605 TYYDTLDIARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657


>gi|212634649|ref|YP_002311174.1| ribonuclease T [Shewanella piezotolerans WP3]
 gi|212556133|gb|ACJ28587.1| Ribonuclease T [Shewanella piezotolerans WP3]
          Length = 235

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKN 55
           KN+ R    +V D+ET G +SK D ++EI    +++ D    + ++T    + P  G   
Sbjct: 15  KNRFRGYFPVVIDVETAGFNSKTDALLEIAVTMLKMDDDGVLQLDKTLHYHIEPFEGANL 74

Query: 56  SPEALKLHGITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFIN 107
            PEAL  +GI     L+   S    F E +              +  +AHNA FD GF++
Sbjct: 75  EPEALAFNGIDPTNPLRGAVSEKEAFLEIFKEVKKAQKASECHRSIIVAHNAAFDHGFVS 134

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
             ++R  + + P  P    DT ++A       +  L   C   GI   +R  H AL D+ 
Sbjct: 135 EAIERNGLKRTPFHPFATFDTAALAGLAI--GQTVLAKACAMAGIPFDNREAHSALYDTE 192

Query: 166 LLSDVYIKMMVGGSQIN 182
             ++++  ++     + 
Sbjct: 193 RTAELFCLIVNRWKSLG 209


>gi|167035772|ref|YP_001671003.1| DNA polymerase IIIsubunit epsilon [Pseudomonas putida GB-1]
 gi|166862260|gb|ABZ00668.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1]
          Length = 201

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 15/186 (8%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  E+  V +L+  +    +Q  +   G         L GIT
Sbjct: 3   RIAVIDFETTGVSPGAGCRATEVAVV-MLEGGRIVERYQSLMN-AGVPVPAFVAGLTGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+  P    + +E  +F        +AHNA FD  F + EL RI +    P     +
Sbjct: 61  TAMLRTAPPVDKVMNEVAEFVG--GTPLLAHNAAFDQKFWDYELSRIGRSRSQPFA--CS 116

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV------GGS 179
           L ++RR  P +  + L +L +  G+     + H A+ D+ + +++   +        G  
Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLP-DTGTAHRAMADAEMAANLLQHLTGVLRQDHGLQ 175

Query: 180 QINFGF 185
           Q++ G 
Sbjct: 176 QLSHGL 181


>gi|330888790|gb|EGH21451.1| exonuclease [Pseudomonas syringae pv. mori str. 301020]
 gi|330987665|gb|EGH85768.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331011360|gb|EGH91416.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 203

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+    + R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 116

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +ARR  P    + L +L     +  + +  H A+ D+ + +++   + 
Sbjct: 117 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 165


>gi|260773225|ref|ZP_05882141.1| ribonuclease T [Vibrio metschnikovii CIP 69.14]
 gi|260612364|gb|EEX37567.1| ribonuclease T [Vibrio metschnikovii CIP 69.14]
          Length = 218

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 18/190 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G + + D ++EI A+ L    + +     T    + P  G      AL+ +
Sbjct: 19  PVVIDVETAGFNPQTDALLEICAITLCMDEQGDLHPASTLHFHIEPFEGANIEKAALEFN 78

Query: 64  GITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQRIN 114
           GI D F  L+   +      E +    ++        A  +AHNA FD GF+ A  +R  
Sbjct: 79  GIHDPFSALRGAVTEEYALKEIYKQVRKEQKAADCSRAIIVAHNASFDHGFVMAANERCK 138

Query: 115 KD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               P  P    DT +++   +   +  L   CK  G+   +R  H AL D+   + ++ 
Sbjct: 139 LKRVPFHPFATFDTAALSGLAY--GQTVLAKACKAAGMEFDNREAHSALYDTQQTAALFC 196

Query: 173 KMMVGGSQIN 182
            ++     + 
Sbjct: 197 GIINKWKALG 206


>gi|147675730|ref|YP_001216478.1| ribonuclease T [Vibrio cholerae O395]
 gi|153216049|ref|ZP_01950254.1| ribonuclease T [Vibrio cholerae 1587]
 gi|153826220|ref|ZP_01978887.1| ribonuclease T [Vibrio cholerae MZO-2]
 gi|124114499|gb|EAY33319.1| ribonuclease T [Vibrio cholerae 1587]
 gi|146317613|gb|ABQ22152.1| ribonuclease T [Vibrio cholerae O395]
 gi|149740080|gb|EDM54249.1| ribonuclease T [Vibrio cholerae MZO-2]
 gi|227012823|gb|ACP09033.1| ribonuclease T [Vibrio cholerae O395]
          Length = 243

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L      +     T    + P  G
Sbjct: 27  LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 86

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                 AL+  GI D F  L+   S      E +    ++        A  +AHNA FD 
Sbjct: 87  ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 146

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+ A  +R      P  P    DT +++       +  L   CK  G+   +R  H AL
Sbjct: 147 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 204

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 205 YDTQKTAELFCTIVNQWKALG 225


>gi|170754352|ref|YP_001780953.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum B1 str. Okra]
 gi|169119564|gb|ACA43400.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum B1 str. Okra]
          Length = 855

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 95/175 (54%), Gaps = 8/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +    +VFD+E+TG++   D I++I  +++ +  +   +FQ FL P  +K+  ++  +
Sbjct: 489 ELDNENVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIP--KKSVGDSYLV 546

Query: 63  HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           HG +D+FLK+   +   +  +F +F   ++   + HN  FD+  +N+EL+R++ +     
Sbjct: 547 HGFSDQFLKENGENKKVVLKDFLEFI--KDTVIVGHNVTFDISILNSELERLSLEKASFK 604

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              DTL IARR +PS + + L +L K +      +S H A+ D     DV + M+
Sbjct: 605 TYYDTLDIARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657


>gi|88855710|ref|ZP_01130373.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
 gi|88815034|gb|EAR24893.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
          Length = 417

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 85/212 (40%), Gaps = 9/212 (4%)

Query: 9   KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTGL +   DR++E+  V L         ++  + P GR   P+  ++H I  
Sbjct: 6   FAVIDFETTGLFAGGHDRVVEVAVVHLDAQGTVEGRWETLVNP-GRDLGPQ--RIHQIRA 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P+F  I  +  D    +    +AHNA FD+ F+ AEL+R           + T+
Sbjct: 63  SDIVDAPAFEHIAGQLVDLL--EGRVLVAHNASFDLKFLVAELERTAAWMSTDFVSLCTM 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            +AR   P +   L   C    I +     H A  D+   + +    +   +     ++ 
Sbjct: 121 QLAREYLPGAGRALADCCAALDIQLDD--AHRASADAFATAQLLAAYIESEANDEI-WRE 177

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           + D        TV   +     +P ++ +T  
Sbjct: 178 HLDAALDHSWPTVSAENRAWLPRPPYSEVTAA 209


>gi|258622020|ref|ZP_05717049.1| ribonuclease T [Vibrio mimicus VM573]
 gi|258627109|ref|ZP_05721905.1| ribonuclease T [Vibrio mimicus VM603]
 gi|262171988|ref|ZP_06039666.1| ribonuclease T [Vibrio mimicus MB-451]
 gi|258580627|gb|EEW05580.1| ribonuclease T [Vibrio mimicus VM603]
 gi|258585773|gb|EEW10493.1| ribonuclease T [Vibrio mimicus VM573]
 gi|261893064|gb|EEY39050.1| ribonuclease T [Vibrio mimicus MB-451]
          Length = 224

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L      +     T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                 AL+  GI D F  L+   +      E +    ++        A  +AHNA FD 
Sbjct: 68  ANLEKAALEFTGIYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 127

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+ A  +R      P  P    DT +++       +  L   CK  G+   +R  H AL
Sbjct: 128 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 186 YDTQKTAELFCTIVNQWKALG 206


>gi|170727084|ref|YP_001761110.1| ribonuclease T [Shewanella woodyi ATCC 51908]
 gi|169812431|gb|ACA87015.1| ribonuclease T [Shewanella woodyi ATCC 51908]
          Length = 222

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 22/203 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA-VELLDYSKT---NRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +++ D ++EI   +  +D       ++T    + P  G    PEAL   
Sbjct: 21  PVVIDVETAGFNAQTDALLEIAVTMLKMDDEGILSLDKTLHFHIEPFEGANLEPEALAFT 80

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRI-- 113
           GI         + +K +F  IF E               +AHNA FD GF++  ++R   
Sbjct: 81  GIDPTNPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVSQAIERCAL 140

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++          L   C   GI   +   H AL D+   ++++  
Sbjct: 141 KRTPFHPFATFDTAALSGLAL--GHTVLAKACAIAGIPFDNSEAHSALYDTERTAELFCL 198

Query: 174 MM-----VGGSQINFGFKTNEDR 191
           ++     +GG  I    ++ E++
Sbjct: 199 IVNRWKALGGWPIAIDEESKEEQ 221


>gi|257482174|ref|ZP_05636215.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|298488861|ref|ZP_07006886.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156614|gb|EFH97709.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 204

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+    + R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 4   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 117

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +ARR  P    + L +L     +  + +  H A+ D+ + +++   + 
Sbjct: 118 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 166


>gi|295096042|emb|CBK85132.1| RNAse T [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 219

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 84/206 (40%), Gaps = 22/206 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLVPDTTLHFHVEPFEGANLQP 72

Query: 58  EALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAE 109
           EAL  +GI     L+   S        +    +         A  +AHNA FD  F  A 
Sbjct: 73  EALAFNGIDPTNPLRGAVSEYEALHAIFKMVRKGMKENDCSRAIMVAHNATFDHSFTMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L+  C   GI       H AL D+   
Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACITAGIAFDGTQAHSALYDTERT 190

Query: 168 SDVYIKMM-----VGGSQINFGFKTN 188
           ++++ +++     +GG  +  G + +
Sbjct: 191 AELFCEIVNRWKRLGGWPLPMGDEAD 216


>gi|262165240|ref|ZP_06032977.1| ribonuclease T [Vibrio mimicus VM223]
 gi|262024956|gb|EEY43624.1| ribonuclease T [Vibrio mimicus VM223]
          Length = 224

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV    +         T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGNLHPASTIHFHVEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                 AL+  GI D F  L+   +      E +    ++        A  +AHNA FD 
Sbjct: 68  ANLEKAALEFTGIYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 127

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+ A  +R      P  P    DT +++       +  L   CK  G+   +R  H AL
Sbjct: 128 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 186 YDTQKTAELFCTIVNQWKALG 206


>gi|330829256|ref|YP_004392208.1| ribonuclease T [Aeromonas veronii B565]
 gi|328804392|gb|AEB49591.1| Ribonuclease T [Aeromonas veronii B565]
          Length = 225

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++EI A    ++   +   ++ F   + P  G     
Sbjct: 11  RFRGFYPVVIDVETAGFNAKTDALLEIAAYTLKMDEQGWLVPDQVFHFHVEPFEGANLEK 70

Query: 58  EALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAE 109
            AL+  GI     L+   S     +E +    +         A  +AHNA FD GF+ A 
Sbjct: 71  AALEFTGIDPYNPLRGAVSEKEALTEIFKGIRKGMKEQDCGRAIIVAHNATFDHGFVMAA 130

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P    DT +++       +  L   C+   I   ++  H AL D+   
Sbjct: 131 AERAGLKRNPFHPFATFDTAALSGLAL--GQTVLAKACQSARIPFDNKEAHSALYDTERT 188

Query: 168 SDVYIKMMVGGSQIN 182
           ++++  ++     + 
Sbjct: 189 TELFCHIVNRWKSMG 203


>gi|126437831|ref|YP_001073522.1| DNA polymerase III subunit epsilon [Mycobacterium sp. JLS]
 gi|126237631|gb|ABO01032.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS]
          Length = 330

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 9/164 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RI+ + A+ + D     ++    L P      P    +HG+T E
Sbjct: 17  WAVVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATLLNPG---VDPGPTHVHGLTAE 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I ++  +    +    +AHN  FD  F+ AE + +  + L    ++ T+ 
Sbjct: 74  MLEGAPRFGDIVADLAELL--RGRTLVAHNVGFDYSFLTAEAELVGAE-LPIDSVMCTVE 130

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +ARR    + N  L +L   +G+       H AL D+ +L+ + 
Sbjct: 131 LARRLDLGTENLRLETLAAHWGVP--QLKPHDALDDAQVLAQIL 172


>gi|16272277|ref|NP_438489.1| ribonuclease T [Haemophilus influenzae Rd KW20]
 gi|260581209|ref|ZP_05849028.1| ribonuclease T [Haemophilus influenzae RdAW]
 gi|1173107|sp|P44639|RNT_HAEIN RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|1573293|gb|AAC21987.1| ribonuclease T (rnt) [Haemophilus influenzae Rd KW20]
 gi|260092134|gb|EEW76078.1| ribonuclease T [Haemophilus influenzae RdAW]
          Length = 229

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +          + Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVM 133

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R    ++P  P  + DT S+A       +  L   C+   I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMMVGGSQIN 182
             + ++  M+     + 
Sbjct: 192 RTAKLFCYMVNHLKDLG 208


>gi|317047907|ref|YP_004115555.1| ribonuclease T [Pantoea sp. At-9b]
 gi|316949524|gb|ADU68999.1| ribonuclease T [Pantoea sp. At-9b]
          Length = 222

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 86/212 (40%), Gaps = 22/212 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++EI A    ++   +   + T    + P  G   +P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAATTLKMDDDGWLHCDETLHFHVEPFEGAILNP 72

Query: 58  EALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAE 109
           EAL   GI     L+   S        +    +         A  +AHNA FD  F+ A 
Sbjct: 73  EALAFTGIDPSNPLRGAVSEYDALHAIFKMVRKGMKDSHCNRAIIVAHNATFDHNFLMAA 132

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R+   ++P  P    DT +++       +  L   CK  G+       H AL D+   
Sbjct: 133 AERVGLKRNPFHPFATFDTAALSGLVL--GQTVLAKACKAAGMDFDSTQAHSALYDTEQT 190

Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFK 194
           + ++ +++     +GG  + +    +E+   +
Sbjct: 191 AILFCELVNRWKRLGGWPLAYSDDLSEEDAAE 222


>gi|307545330|ref|YP_003897809.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
 gi|307217354|emb|CBV42624.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581]
          Length = 682

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 10/167 (5%)

Query: 4   KNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61
            + +  + FD ETTGL   + DR+I +GA  +++     + TF+  + P  R     +  
Sbjct: 485 LHDLEIVAFDTETTGLALREGDRLISLGACRIVNGRLLADETFEQHVNPQ-RPIPSASTA 543

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG+ D+ +++ P+   +   F D+     A  +AHNA FD   + A       D  D  
Sbjct: 544 IHGLGDQDVENAPTAEQVLPRFRDYVGS--AVLLAHNAAFD---MLAIRPGPGTDAFDM- 597

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLL 167
            ++DTL ++R   P    +DL+SL KRYG+     ++H AL D+ + 
Sbjct: 598 PVLDTLLLSRALDPGLEGHDLDSLAKRYGLRFPPGTRHTALGDARVT 644


>gi|260769062|ref|ZP_05877996.1| ribonuclease T [Vibrio furnissii CIP 102972]
 gi|260617092|gb|EEX42277.1| ribonuclease T [Vibrio furnissii CIP 102972]
 gi|315180803|gb|ADT87717.1| ribonuclease T [Vibrio furnissii NCTC 11218]
          Length = 219

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 22/209 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G + + D ++EI AV L      +     T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVIDVETAGFNPQTDALLEICAVTLAMDENGDLHPASTIHFHVEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                 AL+ +GI D F  L+   S      E +    ++        A  +AHNA FD 
Sbjct: 68  ANLEKAALEFNGIYDPFSPLRGAVSEEHALKEIYKQVRKEQKAADCSRAIIVAHNAAFDH 127

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           GF+ A  +R      P  P    DT +++   +   +  L   CK  G+   +R  H AL
Sbjct: 128 GFVMAASERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMAFDNREAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNED 190
            D+   ++++  ++     +  G+   +D
Sbjct: 186 YDTQQTAELFCGIVNQWKALG-GWPLADD 213


>gi|330504960|ref|YP_004381829.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
 gi|328919246|gb|AEB60077.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina NK-01]
          Length = 200

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 8/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTG+     R  EIG V +++  +    +Q  +  +G    P   +L GI++ 
Sbjct: 4   IAVIDFETTGVSPTQARATEIG-VAIIEGGRIVDRYQSLMN-SGAWVPPFIEQLTGISNA 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P    + +E  DF  E+    +AHNA FD  F +AEL R+ +  L P     +L 
Sbjct: 62  MLRKAPPSDQVMNEVADFIGER--PLLAHNASFDQKFWDAELARVRRRRLQPFA--CSLL 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++RR  P    + L +L    G+  + R  H AL D+ + +++ + +
Sbjct: 118 LSRRLLPEAPSHKLGNLNAWAGLPDTGR-AHRALADAEMAANLTLHL 163


>gi|153939167|ref|YP_001390679.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum F str. Langeland]
 gi|152935063|gb|ABS40561.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum F str. Langeland]
          Length = 855

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 95/175 (54%), Gaps = 8/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +    +VFD+E+TG++   D I++I  +++ +  +   +FQ FL P  +K+  ++  +
Sbjct: 489 ELDNENVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIP--KKSVGDSYLV 546

Query: 63  HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           HG +D+FLK+   +   +  +F +F   ++   + HN  FD+  +N+EL+R++ +     
Sbjct: 547 HGFSDQFLKENGENKKVVLKDFLEFI--KDTVIVGHNVTFDISILNSELERLSLEKASFK 604

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              DTL IARR +PS + + L +L K +      +S H A+ D     DV + M+
Sbjct: 605 TYYDTLDIARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657


>gi|289649837|ref|ZP_06481180.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 204

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+    + R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 4   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 117

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +ARR  P    + L +L     +  + +  H A+ D+ + +++   + 
Sbjct: 118 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 166


>gi|88802793|ref|ZP_01118320.1| DNA polymerase III subunit [Polaribacter irgensii 23-P]
 gi|88781651|gb|EAR12829.1| DNA polymerase III subunit [Polaribacter irgensii 23-P]
          Length = 361

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI   +   +S  ++ F   + P  ++     ++L GI ++
Sbjct: 2   YAILDIETTGGKFNEEGITEIAIYKFDGHSVVDQ-FISLVNPE-KEIQQFVVRLTGINNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I     +    ++   +AHN  FD   ++ E  R+  D       + T+ 
Sbjct: 60  MLRSAPKFYEIAKRIIEI--TKDCTLVAHNTTFDYRILSTEFDRLGYDF--NRNTLCTVE 115

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++++         L  L K  GI ++ R  H A  D+     ++  ++ 
Sbjct: 116 LSKQLILDQPSYSLGKLTKALGIPMTDR--HRASGDALATVQLFKLLLE 162


>gi|291557306|emb|CBL34423.1| CRISPR-associated protein Cas2, E. coli subfamily [Eubacterium
           siraeum V10Sc8a]
          Length = 268

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 7/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTGL+  +D IIE+GAV + + S    T+ V +    +K     ++L GIT+E
Sbjct: 105 YTVIDIETTGLNP-DDEIIELGAVTVENGS-VAETYSVLVK-TDKKIPEAIIRLTGITEE 161

Query: 69  FLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L  +    S   SEF           + HN  FD+ FI +       D   PS+IIDT+
Sbjct: 162 LLASEGTDKSKALSEFA--MRCNGKPLVGHNIGFDLNFIKSACAENKID-FVPSKIIDTV 218

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            I+R+    +   L ++   + +  +    H AL D  L   +Y K+
Sbjct: 219 KISRKLLDINSYSLAAIADYFDLHYNKDRIHRALDDCLLTQRIYEKL 265


>gi|78066765|ref|YP_369534.1| DNA-directed DNA polymerase [Burkholderia sp. 383]
 gi|77967510|gb|ABB08890.1| DNA-directed DNA polymerase [Burkholderia sp. 383]
          Length = 205

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            V D ETTGL     DR  EI  + L D    +R FQ  +   GR+   + + L GIT+E
Sbjct: 5   AVLDFETTGLSPNMGDRATEIAVILLRDGQVVDR-FQSLMN-AGRRIPSDVVALTGITNE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P  S++  E   F  +     +AHNA FD  F  +EL  +            T+ 
Sbjct: 63  MIAAAPPASNVMKEAAAFVGKH--AVVAHNAGFDKRFWQSELGILGMSAEHAFA--CTML 118

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +ARR +P    + L+SL     +  S R  H A++D+ +   ++ ++
Sbjct: 119 VARRIYPDAQSHRLSSLVDMLRLPKSGR-AHRAMVDAEMAGHLWCRL 164


>gi|320450504|ref|YP_004202600.1| putative DNA polymerase III subunit epsilon [Thermus scotoductus
           SA-01]
 gi|320150673|gb|ADW22051.1| putative DNA polymerase III, subunit epsilon [Thermus scotoductus
           SA-01]
          Length = 247

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 14/173 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL    + +IE+G V L    +  R+FQ  + P+ R  SP   +L GI    
Sbjct: 74  VVLDLETTGLSPGLNEVIEVGLVRLEQGER--RSFQSLVRPS-RPPSPFIERLTGIRAWE 130

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L++ PS   +  + +     + A  +  NA FD+GF+   L+ +     +P  ++DTL +
Sbjct: 131 LEEAPSLEEVLEKAYPLL--RGATLVIQNASFDLGFLRPALEGMGYSLENP--VVDTLRL 186

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL----SDVYIKMMVG 177
           A+R  P   R  L++L +   + +  R  H AL D         +VY  +  G
Sbjct: 187 AKRAMPGLRRYGLDALSQV--LELPPREAHRALGDVERTLAVAYEVYYMLTSG 237


>gi|269102191|ref|ZP_06154888.1| ribonuclease T [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162089|gb|EEZ40585.1| ribonuclease T [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 221

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 22/207 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           K++ R    +V D+ET G +++ D ++EI AV L      +     T    + P  G   
Sbjct: 11  KSRFRGYFPVVIDVETAGFNAQTDALLEICAVTLKMDDDGWLHPATTLHFHVTPFEGAIL 70

Query: 56  SPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFI 106
             EAL+ +GI D F  L+   S  +   E +    ++        A  +AHNA FD  F+
Sbjct: 71  HKEALEFNGIRDPFSPLRGAVSEDTALKEIFKQIRKEQKNADCSRAIMVAHNANFDHSFV 130

Query: 107 NAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            A  +R  + ++P  P    DT +++       +  L   C+   I   ++  H AL D+
Sbjct: 131 MAAAERAKLKRNPFHPFATFDTAALSGLAL--GQTVLAKACQTANIPFDNKEAHSALYDT 188

Query: 165 HLLSDVYIKMMVGGSQINFGFKTNEDR 191
              ++++ K++     +  G+   +D 
Sbjct: 189 ERTAELFCKIVNKWKALG-GWPLVDDE 214


>gi|251793080|ref|YP_003007806.1| ribonuclease T [Aggregatibacter aphrophilus NJ8700]
 gi|247534473|gb|ACS97719.1| ribonuclease T [Aggregatibacter aphrophilus NJ8700]
          Length = 217

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 20/199 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53
           + K++ R    ++ D+ET GL++K + ++E+ A+ +      +   ++     + P  G 
Sbjct: 12  LLKHRFRGYLPVIIDVETAGLNAKTNALLELAAITVKMDDNGHLVPDQKCHFHIQPFEGA 71

Query: 54  KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGF 105
              PE++K +GI  D  L+   S +   SE +            Q +  +AHNA FD GF
Sbjct: 72  NIDPESIKFNGIDIDNPLRGAISENIAISEMFKMVRRAQKDAECQRSIIVAHNAAFDQGF 131

Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           I A  QR N  ++P  P    DT +++       +  L   C+   I       H AL D
Sbjct: 132 IMAAAQRTNAKRNPFHPFSTFDTATLSGFMF--GQTVLIKACQAAKIPFDGSQAHSALYD 189

Query: 164 SHLLSDVYIKMMVGGSQIN 182
           +   ++++  M+     + 
Sbjct: 190 TERTAELFCYMVNHLKTLG 208


>gi|68248930|ref|YP_248042.1| ribonuclease T [Haemophilus influenzae 86-028NP]
 gi|81336659|sp|Q4QNL5|RNT_HAEI8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|68057129|gb|AAX87382.1| ribonuclease T [Haemophilus influenzae 86-028NP]
          Length = 229

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +          + Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVM 133

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R    ++P  P  + DT S+A       +  L   C+   I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMMVGGSQIN 182
             + ++  M+     + 
Sbjct: 192 RTAKLFCYMVNHLKDLG 208


>gi|256827805|ref|YP_003151764.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Cryptobacterium curtum DSM 15641]
 gi|256583948|gb|ACU95082.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Cryptobacterium curtum DSM 15641]
          Length = 1043

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 11/178 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG+    D + +I A  +++    +  F  F+ P GR    E   L  I + 
Sbjct: 37  IVVIDTETTGISFVRDELTQIAAARMVEGKIVD-WFVTFVNP-GRPIPEEISHLTSIYES 94

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D PS      +  DF  E  +  +AHNA FD  F          + L  +  ID+L 
Sbjct: 95  DVADAPSPEEAVFQLVDFVGE--SCLVAHNAAFDKHFCTKPAT---GESLTHNIWIDSLD 149

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +AR   P  + + L  L + +   +S    H A  D   L  V+  ++     ++ G 
Sbjct: 150 LARIALPRLKSHRLLDLVRAFDAPLS---THRADADVEALCAVFRILLAAVDAMSQGL 204


>gi|188533941|ref|YP_001907738.1| ribonuclease T [Erwinia tasmaniensis Et1/99]
 gi|188028983|emb|CAO96849.1| Ribonuclease T [Erwinia tasmaniensis Et1/99]
          Length = 218

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 22/208 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G D+K + ++EI AV    +   +   + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFDAKTNALLEIAAVTLKMDNDGWLVKDETLHFHVEPFPGSILLP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  S  +IF        +        +AHNA FD+ F+NA 
Sbjct: 73  EALAFNGIDPANPLRGAVSEYESLHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L   C   G+T      H AL D+   
Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLVL--GQTVLAKACHAAGMTFDSSQAHSALYDTLQT 190

Query: 168 SDVYIKMM-----VGGSQINFGFKTNED 190
           +D++ +++     +GG  +    K++ D
Sbjct: 191 ADLFCELVNRWKRLGGWPLPLAAKSDAD 218


>gi|330870427|gb|EGH05136.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 203

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+    + R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 116

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +ARR  P    + L +L     +  + +  H A+ D+ + +++   + 
Sbjct: 117 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 165


>gi|330895532|gb|EGH27842.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 203

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 9/177 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+    + R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 3   RIAVIDFETTGISPGHSCRATEIAVVIMAQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 61  NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIERT--REQSFACS 116

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           L +ARR  P    + L +L +   +       H A+ D+ + +++   +     Q +
Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLP-DTGKAHRAMADAEMAANLTAYLTNELRQTH 172


>gi|310641367|ref|YP_003946125.1| DNA polymerase iii, epsilon subunit [Paenibacillus polymyxa SC2]
 gi|309246317|gb|ADO55884.1| DNA polymerase III, epsilon subunit [Paenibacillus polymyxa SC2]
          Length = 245

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 10/178 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEA 59
              +++  +VFD+ETTG  ++  D I+  GA+ ++      +  F   + P   +   + 
Sbjct: 53  TPLDRLETVVFDLETTGFSAQHGDEILSFGAIRVVGDVIMEKEQFYTLVNPRT-EIPEQI 111

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L GIT E     P   +   +F  F   +    +AH +  D  F+NA L + +K  L 
Sbjct: 112 TRLTGITREMTDGAPPLMNGLHDFMSFVGGR--VLVAHASAHDKAFLNAALWKTSKVQL- 168

Query: 120 PSRIIDTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R++DT+ +A+   P       L+ L     I I  R  H AL D+ + + +++  +
Sbjct: 169 THRVLDTMMLAKWLEPQQHQTYSLDELLAYQSIPIEGR--HHALEDAKMTAKLWVAYV 224


>gi|289627588|ref|ZP_06460542.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681]
          Length = 204

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+    + R  EI  V +       R FQ  +   G +       L GI+
Sbjct: 4   RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 117

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +ARR  P    + L +L     +  + +  H A+ D+ + +++   + 
Sbjct: 118 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 166


>gi|268592614|ref|ZP_06126835.1| ribonuclease T [Providencia rettgeri DSM 1131]
 gi|291311752|gb|EFE52205.1| ribonuclease T [Providencia rettgeri DSM 1131]
          Length = 214

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 20/196 (10%)

Query: 5   NKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NGRKNS 56
           N+ R    +V D+ET G ++K D ++EI A+ L          + T    + P  G    
Sbjct: 12  NRFRGYYPVVIDVETGGFNAKTDGLLEIAAITLKMDKDGWLSMDETLHFHVEPFEGANLE 71

Query: 57  PEALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINA 108
           P AL   GI     L+   S        +    +         A  +AHNA FD  F+  
Sbjct: 72  PSALAFTGIDPTNPLRGAVSEYEALHAIFKVIRKGMKNTDCNRAIIVAHNANFDHSFVMN 131

Query: 109 ELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +R    ++P  P    DT +++       +  L   C   GI    +  HGAL D++ 
Sbjct: 132 AAERAGLKRNPFHPFATFDTAALSGLVF--GQTILAKACVSAGIPFDGKQAHGALYDTNR 189

Query: 167 LSDVYIKMMVGGSQIN 182
            + ++ +++    ++ 
Sbjct: 190 TALLFCEIVNKWKKLG 205


>gi|262402653|ref|ZP_06079214.1| ribonuclease T [Vibrio sp. RC586]
 gi|262351435|gb|EEZ00568.1| ribonuclease T [Vibrio sp. RC586]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 18/190 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +++ D ++EI AV L      +     T    + P  G      AL+  
Sbjct: 19  PVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFT 78

Query: 64  GITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQRIN 114
           GI D F  L+   +      E +    ++        A  +AHNA FD  F+ A  +R  
Sbjct: 79  GIYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCK 138

Query: 115 KD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               P  P    DT +++       +  L   CK  G+   +R  H AL D+   ++++ 
Sbjct: 139 LKRVPFHPFATFDTAALSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFC 196

Query: 173 KMMVGGSQIN 182
            ++     + 
Sbjct: 197 TIVNRWKALG 206


>gi|261211954|ref|ZP_05926240.1| ribonuclease T [Vibrio sp. RC341]
 gi|260838562|gb|EEX65213.1| ribonuclease T [Vibrio sp. RC341]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 18/190 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +++ D ++EI AV L      +     T    + P  G      AL+  
Sbjct: 19  PVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFT 78

Query: 64  GITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQRIN 114
           GI D F  L+   +      E +    ++        A  +AHNA FD  F+ A  +R  
Sbjct: 79  GIYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCK 138

Query: 115 KD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               P  P    DT +++       +  L   CK  G+   +R  H AL D+   ++++ 
Sbjct: 139 LKRVPFHPFATFDTAALSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFC 196

Query: 173 KMMVGGSQIN 182
            ++     + 
Sbjct: 197 TIVNRWKALG 206


>gi|109897723|ref|YP_660978.1| ribonuclease T [Pseudoalteromonas atlantica T6c]
 gi|109700004|gb|ABG39924.1| RNAse T [Pseudoalteromonas atlantica T6c]
          Length = 211

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 92/207 (44%), Gaps = 21/207 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGR 53
           + K++ R    ++ D+ET G +++ D ++E+ A+    +   +   ++TF   + P  G 
Sbjct: 7   LLKDRFRGYFPVIVDVETAGFNAQTDALLEVAAITTQMDADGFLTPDKTFHYHVVPFEGA 66

Query: 54  KNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105
                AL+ +GI     L+     + +  +            + Q +  +AHNA FD+GF
Sbjct: 67  NLEKAALEFNGIDPWCALRGALDETEVMKDLCKQIRKEQKDADCQRSVMVAHNAAFDLGF 126

Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           INA ++R  I + P  P    DT +++       +  L   C+   I+      H AL D
Sbjct: 127 INAAIERSKIKRTPFHPFVSFDTTTLSGLAL--GQTVLVKACQAANISFDQSEAHSALYD 184

Query: 164 SHLLSDVYIKMMVGGSQINFGFKTNED 190
           +   +++Y  ++    Q   G+ T E 
Sbjct: 185 TQKTAELYCYIVNK-WQSACGWPTPEH 210


>gi|145628675|ref|ZP_01784475.1| ribonuclease T [Haemophilus influenzae 22.1-21]
 gi|145638764|ref|ZP_01794373.1| ribonuclease T [Haemophilus influenzae PittII]
 gi|144979145|gb|EDJ88831.1| ribonuclease T [Haemophilus influenzae 22.1-21]
 gi|145272359|gb|EDK12267.1| ribonuclease T [Haemophilus influenzae PittII]
 gi|309750254|gb|ADO80238.1| Ribonuclease T [Haemophilus influenzae R2866]
          Length = 229

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +          + Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRRQKDADCQRSIIVAHNAAFDQSFVM 133

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R    ++P  P  + DT S+A       +  L   C+   I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMMVGGSQIN 182
             + ++  M+     + 
Sbjct: 192 RTAKLFCYMVNHLKDLG 208


>gi|34498206|ref|NP_902421.1| exonuclease [Chromobacterium violaceum ATCC 12472]
 gi|34104060|gb|AAQ60420.1| probable exonuclease [Chromobacterium violaceum ATCC 12472]
          Length = 207

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 12/186 (6%)

Query: 6   KMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R  V D ET G     D R  EIG V +++  +    F   +   G    P   +L G
Sbjct: 2   RQRVAVIDFETNGATPGGDCRATEIG-VAMVEDGRVVDRFHSLMN-AGVWVPPMIERLTG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I++  LKD P    +  +   F    +A   AHNA FD  F + EL  +           
Sbjct: 60  ISNAMLKDAPPAERVMRDAAHFVG--DAPLAAHNAGFDRKFWDYELGLLGLS--RRQDFA 115

Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            TL ++RR  P +  + L +L +  G+  + R  H A+ D+ + + +   M++ G  ++ 
Sbjct: 116 CTLLLSRRLLPQAPDHKLGTLARWAGLPDTGR-AHRAMADAEMAAQL---MLLLGDTLSR 171

Query: 184 GFKTNE 189
            F   +
Sbjct: 172 QFHLAD 177


>gi|152993730|ref|YP_001359451.1| DNA polymerase III subunit epsilon [Sulfurovum sp. NBC37-1]
 gi|151425591|dbj|BAF73094.1| DNA polymerase III, epsilon subunit [Sulfurovum sp. NBC37-1]
          Length = 272

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 9/165 (5%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            + R  V DIET G      ++IEIGAV +      +R  + F+            K+ G
Sbjct: 70  QEQRYCVIDIETNGSKPGTSQVIEIGAVMVEKGEIVDR-LETFV--ECAFLPEYITKITG 126

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I    LKD P+  +  ++   F    +A ++AHNA FD  F+ A  +R     +  +  +
Sbjct: 127 IEPIDLKDAPTRRAALTQLRQFMG--DAVFVAHNANFDYSFLTASFERFGLGGIG-NPKL 183

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            T+ +A+R   S R  L  L    GI  +  + H A  D+ L ++
Sbjct: 184 CTIDLAKRTFESERYGLAYLIDFLGIETA--THHRAYSDA-LCAE 225


>gi|50120858|ref|YP_050025.1| ribonuclease T [Pectobacterium atrosepticum SCRI1043]
 gi|81827142|sp|Q6D5W0|RNT_ERWCT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|49611384|emb|CAG74831.1| ribonuclease T [Pectobacterium atrosepticum SCRI1043]
          Length = 223

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 22/213 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++E+ AV    +   + + + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
            AL  +GI         + +  +   IF        ++       +AHNA FD  F+ A 
Sbjct: 73  AALAFNGIDPTNPLRGAVSEYDALHEIFKVVRKGIKDRGCNRAIIVAHNATFDHSFMAAA 132

Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P    DT +++       +  L   C   GI       H AL D++  
Sbjct: 133 AERCSLKRNPFHPFATFDTAALSGLVL--GQTVLAKACITAGIAFDSSQAHSALYDTNQT 190

Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKE 195
           + ++ +++     +GG  +     + ED   ++
Sbjct: 191 ALLFCELVNRWKRLGGWPLALEESSLEDTSAED 223


>gi|268609211|ref|ZP_06142938.1| exonuclease [Ruminococcus flavefaciens FD-1]
          Length = 179

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 85/180 (47%), Gaps = 9/180 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R IVFD+ET   +  N+ +  IG + +++  +   +F   + P         ++L GI  
Sbjct: 3   RYIVFDVETP--NFANNHMSAIG-ITVVEDGRIADSFFSLVDPETH-FDHFNIRLTGIDP 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++  P+F+ ++ +     N      +AHNA FD+  +   L     +    ++ + T+
Sbjct: 59  KKVQGAPNFAQLWQKIEPIMNSG--ILVAHNAVFDMSVLKKCLSAYGIEWKSTAKYLCTV 116

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
              R+  P   + LN +C  YGI++ H   H A  DS   +++ ++ +  G+ +N   +T
Sbjct: 117 QAGRKLLPGRGHKLNEMCDYYGISLDH---HQADSDSRACAEILLRYIESGADVNKFIRT 173


>gi|110833585|ref|YP_692444.1| ribonuclease T [Alcanivorax borkumensis SK2]
 gi|110646696|emb|CAL16172.1| Ribonuclease T [Alcanivorax borkumensis SK2]
          Length = 228

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 17/196 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNS 56
           +R      +V D+ET G +S+ D ++EI AV    +     + +   Q  + P  G    
Sbjct: 16  LRFRGFLPVVIDVETGGFNSQTDALLEIAAVLIEMDAQGNLRPSTRIQFHVDPFPGANLE 75

Query: 57  PEALKLHGIT-DEFLKDKPSFSS----IFSEFWDFFNEQ---NAEWIAHNAKFDVGFINA 108
             AL   GI  +  L+      +    +F        +     A  + HN+ FD GF+NA
Sbjct: 76  QAALDFTGIDPNNPLRGAVPEETALKGVFDPVRKAIKQHACSRAVLVGHNSFFDQGFLNA 135

Query: 109 ELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
              R  I ++P  P    DT ++A   +   +  L   C+  GI  S R  H AL D+  
Sbjct: 136 ATDRTDIKRNPFHPFSSFDTATLAGLVY--GQTVLAKACEAAGIRFSQREAHSALYDATR 193

Query: 167 LSDVYIKMMVGGSQIN 182
            ++++  M+     + 
Sbjct: 194 TAELFCSMVNRFKTLG 209


>gi|117920981|ref|YP_870173.1| ribonuclease T [Shewanella sp. ANA-3]
 gi|166200021|sp|A0KY98|RNT_SHESA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|117613313|gb|ABK48767.1| RNAse T [Shewanella sp. ANA-3]
          Length = 222

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKN 55
           K++ R    +V D+ET G +S+ D ++EI    +++ D      ++T    + P  G   
Sbjct: 11  KHRFRGYFPVVIDVETAGFNSQTDALLEIAVTLLKMDDEGLLGIDKTLHFNIEPFEGANL 70

Query: 56  SPEALKLHGITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFIN 107
            PEAL  +GI     L+   S    F E +              +  +AHNA FD GF++
Sbjct: 71  EPEALAFNGIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVS 130

Query: 108 AELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
             ++R    + P  P    DT ++A          L   C   GI   ++  H AL D+ 
Sbjct: 131 KAIERCDLKRSPFHPFATFDTATLAGLAI--GHTVLAKACIMAGIPFDNKEAHSALYDTE 188

Query: 166 LLSDVYIKMMVGGSQIN 182
             ++++  ++    Q+ 
Sbjct: 189 RTAELFCHIVNRWKQLG 205


>gi|253989411|ref|YP_003040767.1| ribonuclease T [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253780861|emb|CAQ84023.1| ribonuclease T [Photorhabdus asymbiotica]
          Length = 217

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 22/200 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G ++K D ++EI A+ L    +     + +    + P  G    P AL+  
Sbjct: 19  PVVIDVETGGFNAKTDALLEIAAITLKMDDEGWITPDESLHFHIEPFEGANLEPAALEFT 78

Query: 64  GITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAELQR--I 113
           GI     L+   S        +              A  +AHNA FD GF+ A  +R  +
Sbjct: 79  GIDPSNPLRGAVSEYEALHAIFKMVRKGIKNSHCNRAIIVAHNANFDHGFVMAAAERARL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++        +  L   C   G++  +   H AL D++  ++++ +
Sbjct: 139 KRNPFHPFATFDTAALGGLVL--GQTILAKACITAGVSFDNNQAHSALYDTNRTAELFCE 196

Query: 174 MM-----VGGSQINFGFKTN 188
           M+     +GG  +    + N
Sbjct: 197 MVNRWKRLGGWPLAAAVEEN 216


>gi|320096178|ref|ZP_08027770.1| DNA polymerase III PolC [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319976891|gb|EFW08642.1| DNA polymerase III PolC [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 210

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 11/181 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGL  +   I EIGA+ +   ++    F+  + P+     P   K+ GIT +
Sbjct: 19  WLVVDVETTGL-GRACEITEIGALRMR-GTQVVDEFEELVRPS-APIPPFIEKMTGITTD 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNA--EWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +       +++  F  +          +AHNA FD+GF+ A   R    P      +DT
Sbjct: 76  MVAGADPVQAVYPRFAAWAGAGAPGRVLVAHNADFDMGFL-ARAARACSMPWRTPPSVDT 134

Query: 127 LSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           LS+AR   P      + L ++ + +    +    H AL D+    +V   +    ++  F
Sbjct: 135 LSLARLALPRPVVANHRLGTVARHFRTATAPG--HRALGDARATGEVLCGLAGLAAEAGF 192

Query: 184 G 184
           G
Sbjct: 193 G 193


>gi|146308744|ref|YP_001189209.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
 gi|145576945|gb|ABP86477.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
          Length = 199

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 8/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTG+     R  EIG   + D    +R +Q  +  +G    P   +L GI++ 
Sbjct: 4   IAVIDFETTGVSPSQARATEIGVAIIEDGRIVDR-YQSLMN-SGAWVPPFIEQLTGISNA 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P    + +E  DF  E+    +AHNA FD  F +AEL R+ +    P     +L 
Sbjct: 62  MLRKAPPSEQVMNEVADFIGER--PLLAHNASFDQKFWDAELARVRRRRSQPFA--CSLL 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++RR  P    + L +L    G+  + R  H AL D+ + +++ + +
Sbjct: 118 LSRRLLPEAPSHKLGNLNAWAGLPDTGR-AHRALADAEMAANLTLHL 163


>gi|253688762|ref|YP_003017952.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755340|gb|ACT13416.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 223

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 22/213 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++E+ AV    +   + + + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
            AL  +GI         + +  +   IF        EQN      +AHNA FD  F+ A 
Sbjct: 73  AALAFNGIDPTNPLRGAVSEYDALHEIFKVVRKGIKEQNCNRAIIVAHNATFDHSFMMAA 132

Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P    DT +++       +  L   C   GI       H AL D++  
Sbjct: 133 AERCSLKRNPFHPFATFDTAALSGLVL--GQTVLAKACITAGIAFDSSQAHSALYDTNQT 190

Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKE 195
           + ++ +++     +GG  I     + ED   ++
Sbjct: 191 ALLFCELVNRWKRLGGWPIALEENSLEDVSAED 223


>gi|225017584|ref|ZP_03706776.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum
           DSM 5476]
 gi|224949644|gb|EEG30853.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum
           DSM 5476]
          Length = 865

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 14/212 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+E+TG D+ +D II+I AV + +  +  R+F+  L P+  K   ++  +H  +D  
Sbjct: 500 VVFDVESTGTDTSSDEIIQIAAVRIDETGRVLRSFEQLLHPS--KPVGQSEAVHHFSDAL 557

Query: 70  LKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L ++      + +EF  F   + A  + HN  FD+  + +EL R+   P +     DTL 
Sbjct: 558 LAERGGEPPQVLAEFCSFV--RGAVVVGHNVGFDLTILASELSRLGLPPAEYEEYYDTLD 615

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR +P    + L +L K     +  +S H A+ D     DV + +       +    T
Sbjct: 616 LARRFYPDLPNHKLETLSKLLDTEV--KSSHDAMDDILATKDVLLHLTA-----HKLLPT 668

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            + R     ++       L        R ++E
Sbjct: 669 LQQR-KAVYERYQGRFDKLSSTIESLRRASEE 699


>gi|172040912|ref|YP_001800626.1| putative exonuclease [Corynebacterium urealyticum DSM 7109]
 gi|171852216|emb|CAQ05192.1| putative exonuclease [Corynebacterium urealyticum DSM 7109]
          Length = 270

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 16/177 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+ETTGL+   DR+IEI AV  +++     +F   L P       E+  ++G+ D
Sbjct: 90  RCAVVDLETTGLEPATDRVIEI-AVLTVEHGSIVGSFHCLLNPEC-SIPGESSNINGLRD 147

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP------- 120
           + + + P+F+ +  E       +    + HN KFDVGF+ AE  R+              
Sbjct: 148 DDVANSPTFAEVAQELLPHVLNR--TLVGHNVKFDVGFLAAEYARLGHADAARVLTEQCL 205

Query: 121 SRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            + + T + AR   P     R  L +L    G+  S    H A  D+    D+  ++
Sbjct: 206 PQALCTAATARELIPREAVGRYTLANLAAHCGLASS--PAHRAQQDAATTFDLTHRL 260


>gi|301155716|emb|CBW15184.1| ribonuclease T (RNase T) [Haemophilus parainfluenzae T3T1]
          Length = 229

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L        + ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGNLQPDQKCHFHIEPFEGANI 73

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +            Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDAECQRSIIVAHNAAFDQSFVM 133

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R    ++P  P  + DT ++A       +  L   C+   I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTATLAGFMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMMVGGSQIN 182
             ++++  M+     + 
Sbjct: 192 RTAELFCYMVNHLKDLG 208


>gi|187780046|ref|ZP_02996519.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
           15579]
 gi|187773671|gb|EDU37473.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
           15579]
          Length = 855

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 94/175 (53%), Gaps = 8/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +    +VFD+E+TG+++  D I++I  +++ +  +    F+ FL P  +K   ++  +
Sbjct: 489 ELDNENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIEKFERFLTP--KKYVGDSYLV 546

Query: 63  HGITDEFLKDKPSFSS-IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           HG +D+FLK+K      +  +F +F   ++   I HN  FD+  +N+ELQR+  +  +  
Sbjct: 547 HGFSDQFLKEKGEDKERVLKDFLEFV--KDTVVIGHNITFDITILNSELQRLGLEKANFK 604

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              DTL IARR +PS + + L +L K +      +S H A+ D     DV + M+
Sbjct: 605 TYYDTLDIARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMVML 657


>gi|229525619|ref|ZP_04415024.1| ribonuclease T [Vibrio cholerae bv. albensis VL426]
 gi|229339200|gb|EEO04217.1| ribonuclease T [Vibrio cholerae bv. albensis VL426]
          Length = 224

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L      +     T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTVHFHVEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                 AL+  GI D F  L+   S      E +    ++        A  +AHNA FD 
Sbjct: 68  ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYRLVRKEQKAADCSRAIIVAHNAHFDH 127

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+ A  +R      P  P    DT +++       +  L   CK  G+   +R  H AL
Sbjct: 128 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 185

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 186 YDTQKTAELFCTIVNQWKALG 206


>gi|148379300|ref|YP_001253841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931399|ref|YP_001383675.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936519|ref|YP_001387223.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. Hall]
 gi|148288784|emb|CAL82868.1| putative DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927443|gb|ABS32943.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932433|gb|ABS37932.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. Hall]
          Length = 855

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 94/168 (55%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+E+TG+++  D I++I  +++ +  +   +FQ FL P  +K   ++  +HG +D+F
Sbjct: 496 VVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLTP--KKFVGDSYLVHGFSDQF 553

Query: 70  LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK+   +   +  +F +F   ++   + HN  FD+  +N+EL+R++ +        DTL 
Sbjct: 554 LKENGENKKVVLKDFLEFI--KDTVIVGHNVAFDISILNSELERLSLEKASFKTYYDTLD 611

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IARR +P+ + + L +L K +      +S H A+ D     DV + M+
Sbjct: 612 IARRFYPNLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657


>gi|82751054|ref|YP_416795.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122]
 gi|123549199|sp|Q2YY51|DING_STAAB RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|82656585|emb|CAI81008.1| probable ATP-dependent DNA helicase [Staphylococcus aureus RF122]
          Length = 897

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   + +    + T+   +     +  P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDFDDIIQIGITFVRNIQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F+ +    +D  N ++  ++AHN  FD+ FI    +  N     P R+IDTL 
Sbjct: 64  MLQQAPYFNQVAQGIYD--NMKDCIFVAHNVDFDLNFIKKAFKDCNIQY-RPKRVIDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I +   P      L+ L + +GIT+++   H A  D+   + + I
Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163


>gi|323464450|gb|ADX76603.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus pseudintermedius ED99]
          Length = 900

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG  +  D II+IG   + +    +  +   +             L  I +E
Sbjct: 7   YAVVDLETTGNQADYDEIIQIGITFVRNNQIID-HYHSMIK-TDLTIPTFIQALTSIEEE 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  +  + +     ++  ++AHN  FD+ F+    ++ +     P ++IDTL 
Sbjct: 65  MLNQAPYFKEVAHKIYSKI--KDCIFVAHNVNFDLNFLKRSFKKCHIHY-QPKKVIDTLE 121

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + +   P+ +   L  L +  GI ++    H A  D++  + + I
Sbjct: 122 LFKIAFPTEKSYQLTELAESLGIPLT--QAHRADEDAYTTARIMI 164


>gi|71894029|ref|YP_278137.1| DNA polymerase III PolC [Mycoplasma synoviae 53]
 gi|71850817|gb|AAZ43426.1| DNA polymerase III alpha subunit [Mycoplasma synoviae 53]
          Length = 1451

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 7/176 (3%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFDIETT L + +  IIE  A  +++         +F+  +  K S    +L  IT+
Sbjct: 410 RYVVFDIETTSLSAYHGEIIEFAA-TIIENKAVVDKVDIFIK-SKEKLSHFTTRLTSITN 467

Query: 68  EFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           E L  K         + +D  N   A  +AHNA FD  F+  +  + N         ID+
Sbjct: 468 EMLDQKGIELKEALQKIYDVLNNNVA--VAHNANFDYNFLIEKFDQNNMQA-PKCTFIDS 524

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           L ++R       +++LN  C+   +       H AL D+ +L+D +I+  +    I
Sbjct: 525 LVVSRILFEHRDKHNLNEFCRNLSVNYDTEKAHRALYDTEVLADAWIEATLKLKDI 580


>gi|259503450|ref|ZP_05746352.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041]
 gi|259168528|gb|EEW53023.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041]
          Length = 929

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 12  FDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+ETTG      DRII++G V + D    NR F+  + P  R      ++L GI +  +
Sbjct: 2   VDLETTGTSVNHGDRIIQVGCVLVQDGQVINR-FETKINPRER-IPRAVVQLTGIQERDV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P F  +    +         ++AHN  FD  F+NAEL+R    PL   + IDT++++
Sbjct: 60  RKAPLFEDVAGTIYSLL--TGTIFVAHNVNFDFPFLNAELERAGYPPLSI-KAIDTVTLS 116

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +   P++++  L  L     I   H   H A+ D+   + + + ++
Sbjct: 117 QILLPTAKSFRLRDLTSSLQIE--HDHPHSAVSDAEATTGLLVDLL 160


>gi|152979466|ref|YP_001345095.1| ribonuclease T [Actinobacillus succinogenes 130Z]
 gi|150841189|gb|ABR75160.1| ribonuclease T [Actinobacillus succinogenes 130Z]
          Length = 226

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 90/201 (44%), Gaps = 22/201 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGR 53
           + KN+ R    +V D+ET GL+ + D ++E+ AV L          ++T+   + P  G 
Sbjct: 19  LLKNRFRGYYPVVIDVETAGLNCQTDGLLELAAVTLKMNDRGDLLPDQTYHCHIRPFEGA 78

Query: 54  KNSPEALKLHGITDE-FLKDK--PSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDV 103
             +PE++K++GI  E  +++    S S   +  +            Q +  +AHNA FD 
Sbjct: 79  GINPESMKINGIDLESPIRNAIAVSESEAITGLFQMVRRGQKNAGCQRSIIVAHNAAFDH 138

Query: 104 GFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           GF+ A  +R  I ++P  P    DT +++       +  L   C+   I       H AL
Sbjct: 139 GFVMAAAERTKIKRNPFHPFGSFDTATLSGLMF--GQTVLIKACQSASIPFDSNQAHSAL 196

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  M+     + 
Sbjct: 197 YDTERTAELFCYMVNHLKALG 217


>gi|148825392|ref|YP_001290145.1| ribonuclease T [Haemophilus influenzae PittEE]
 gi|229846411|ref|ZP_04466519.1| ribonuclease T [Haemophilus influenzae 7P49H1]
 gi|166228565|sp|A5UAG1|RNT_HAEIE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|148715552|gb|ABQ97762.1| ribonuclease T [Haemophilus influenzae PittEE]
 gi|229810504|gb|EEP46222.1| ribonuclease T [Haemophilus influenzae 7P49H1]
          Length = 229

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +          + Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMIRRGQKDADCQRSIIVAHNAAFDQSFVM 133

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R    ++P  P  + DT S+A       +  L   C    I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMMVGGSQIN 182
             ++++  M+     + 
Sbjct: 192 RTAELFCYMVNHLKDLG 208


>gi|71281998|ref|YP_270147.1| ribonuclease T [Colwellia psychrerythraea 34H]
 gi|71147738|gb|AAZ28211.1| ribonuclease T [Colwellia psychrerythraea 34H]
          Length = 231

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 18/190 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA-VELLDYSK----TNRTFQVFLCP-NGRKNSPEALKL 62
            +V D+ET G +S+ D ++E+ A V  LD        + T Q  + P  G    P+AL+ 
Sbjct: 33  PVVIDVETAGFNSQTDALLELAASVLHLDEDTGDFSIDETIQFNIEPFEGANLEPKALEF 92

Query: 63  HGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN 114
            GI     L+          + +            Q A  +AHNA FD+GF+NA  +R  
Sbjct: 93  TGIDPTNPLRGAVDEDEALKDLFKLVRKKMKVAGCQRAIIVAHNAAFDLGFLNAATERCK 152

Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             + P       DT ++A       +  L   C    I  ++   H AL D+   ++++ 
Sbjct: 153 IKRSPFHSFVSFDTTTLAGLAL--GQTVLAKACIAAKIDFNNSEAHSALYDTEKTAELFC 210

Query: 173 KMMVGGSQIN 182
            ++     + 
Sbjct: 211 HIVNKWRALG 220


>gi|157737104|ref|YP_001489787.1| DNA polymerase III subunit epsilon [Arcobacter butzleri RM4018]
 gi|157698958|gb|ABV67118.1| DNA polymerase III [Arcobacter butzleri RM4018]
          Length = 272

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 9/172 (5%)

Query: 5   NKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           ++      DIET G   K   +IIE+GAV+  +  +   +F   +    ++  P   ++ 
Sbjct: 79  SEQTFCFVDIETNGGTPKKGFQIIELGAVKYKNG-EVLDSFNSLV--FAKEIPPYIQEVT 135

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            IT   L+  P    +  +F +F  +    +IAH+ KFD  FI+   ++ +   L  +R 
Sbjct: 136 KITPAMLETAPRIEKVLKDFKEFLGDD--VFIAHDIKFDYNFISDSFEKYSLGKLL-NRK 192

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + T+ +A+R   S +  L+SL +   I I +   H A  D+     V+ K +
Sbjct: 193 LCTIDLAKRTIKSEKYGLSSLKELLNIDIENH--HRAYYDALTTQIVFEKCL 242


>gi|298244072|ref|ZP_06967878.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297551553|gb|EFH85418.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 1009

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 15/210 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K+ +R I  D+ETTGL ++ D I+E+ A++    S+   TF+ F+ P GR       
Sbjct: 1   MAKKSAIR-IALDLETTGLHAEQDAILEVAAIKFQ-GSEVLDTFETFISP-GRSIPYRVQ 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GI  E L   P F +I  +   F    +   + H+  FDVGF+              
Sbjct: 58  RLTGIKPELLVGAPPFDAISRQLHTFLG--DYPIVGHSIPFDVGFLRRW------GLAHS 109

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + ++DT  +A    PS S  +L  +    GI +    +H A++D+ L   V++ +     
Sbjct: 110 NPMVDTFELATVLLPSLSSYNLGQVAHSLGIQVPS-DRHRAMVDTVLAMQVFLSLYERLQ 168

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
            ++      +D    +  ++ P +   + +
Sbjct: 169 TVDLAL--LQDLARLDAPRSWPLLHFFRHE 196


>gi|72161431|ref|YP_289088.1| hypothetical protein Tfu_1027 [Thermobifida fusca YX]
 gi|71915163|gb|AAZ55065.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX]
          Length = 590

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 12/177 (6%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
           G       +IE+GAV L D    +  F   + P+          L GIT   ++  PS +
Sbjct: 57  GTHPATAALIEVGAVRLRDGQVLDE-FTTLVNPH-APVPASITLLTGITTAMVESAPSPA 114

Query: 78  SIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS 136
           +  S F DF   +     +AHNA FDV F+ A   R    P     ++DTL +ARR  P 
Sbjct: 115 AALSAFLDFAGFRPGTVLVAHNAPFDVRFLKAACARHGI-PWPSPAVLDTLQLARRLVPR 173

Query: 137 S---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
                + L++L + +G   +H   H AL D+   +DV   ++  G     G  T E+
Sbjct: 174 GEVRNHRLDTLARVFG---AHPPAHRALDDARATADVLRGLV--GRLRARGVDTWEE 225


>gi|331701432|ref|YP_004398391.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128775|gb|AEB73328.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           buchneri NRRL B-30929]
          Length = 945

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 9/174 (5%)

Query: 5   NKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +K    V DIETTG D   D R I+     + +     +TF   + P  R+     ++L 
Sbjct: 3   SKTTFAVVDIETTGTDISADNRTIQFSCCLVSNNKII-KTFVTDINPQ-REVPNRIVQLT 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT+E L+   +F  + ++ +   N  N  ++AHN  FD  F+N+E QR+    L     
Sbjct: 61  GITNERLQKAKTFDQVAAQLYSLLN--NTVFVAHNVNFDFPFLNSEFQRVGYPELQI-EA 117

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           IDT+++++   P+ S   L  L   + I   H   H A  D+   + + + ++ 
Sbjct: 118 IDTVTLSQILLPTLSSYRLQDLSSYFNIE--HDHPHTADSDALATAKLLLILLR 169


>gi|319892447|ref|YP_004149322.1| DinG family ATP-dependent helicase YoaA [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162143|gb|ADV05686.1| DinG family ATP-dependent helicase YoaA [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 900

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG  +  D II+IG   + +    +  +   +             L  I +E
Sbjct: 7   YAVVDLETTGNQADYDEIIQIGITFVRNNQIID-HYHSMIK-TDLTIPTFIQALTSIEEE 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  +  + +     ++  ++AHN  FD+ F+    ++ +     P ++IDTL 
Sbjct: 65  MLNQAPYFKEVAHKIYSKI--KDCIFVAHNVNFDLNFLKRSFKKCHIHY-QPKKVIDTLE 121

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + +   P+ +   L  L +  GI ++    H A  D++  + + I
Sbjct: 122 LFKIAFPTEKSYQLTELAESLGIPLT--QAHRADEDAYTTARIMI 164


>gi|148653458|ref|YP_001280551.1| ribonuclease T [Psychrobacter sp. PRwf-1]
 gi|148572542|gb|ABQ94601.1| RNAse T [Psychrobacter sp. PRwf-1]
          Length = 274

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 20/205 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R  K   +V D+ET G ++  D ++EI  + ++   +            L P  G     
Sbjct: 56  RFRKFLPVVVDVETAGFNAATDALLEIACIPIVMDDEGKFVPGEPLSAHLNPFEGANLEQ 115

Query: 58  EALKLHGIT--DEFLK-----DKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107
            AL   GI   +   K     ++P+   IF E      + +      + HNA FD+ F+N
Sbjct: 116 RALDFTGIDPNNPMRKAIAEEEQPALRRIFKELKAVRKDNDCLKCILVGHNAHFDLSFLN 175

Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A ++R N    +P     ++DT++++       +  L   C+  GI       H AL D+
Sbjct: 176 AAIERTNSKNHNPFHQFSVLDTVTLSALAF--GQTVLARACRAAGIEFDGSEAHSALYDT 233

Query: 165 HLLSDVYIKMMVGGSQINFGFKTNE 189
              ++++ K++   S +      + 
Sbjct: 234 QKTAELFCKILNHYSMMPISLPEDN 258


>gi|326803711|ref|YP_004321529.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651377|gb|AEA01560.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 890

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 9/180 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +  V D+ETTG    + DRII+IG V L    K    F+  + P           L GI 
Sbjct: 4   KYAVVDLETTGTKYNRGDRIIQIGVVFLEGQKKIGE-FKSNIQP-LIPVPKNISDLTGIQ 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E L+D P F  I  +   F   Q+  ++AHN  FD  F++A  + +    LD    IDT
Sbjct: 62  TEDLRDAPLFEDIAPDL--FQQLQDCVFVAHNINFDYKFLSASFEGVGLPALDL-EGIDT 118

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           + + R  +P  +   L      +GI +     H A+ D+   + + +++M   + +    
Sbjct: 119 VELIRVLYPQAASYKLGDFSLDHGINLV--KAHTAIEDARATAQLLVQVMDKVASLPESL 176


>gi|91792755|ref|YP_562406.1| ribonuclease T [Shewanella denitrificans OS217]
 gi|123356922|sp|Q12PE3|RNT_SHEDO RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|91714757|gb|ABE54683.1| RNAse T [Shewanella denitrificans OS217]
          Length = 226

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G ++  D ++EI    +++ D      ++T    + P  G    PEAL  +
Sbjct: 19  PVVIDVETAGFNANTDALLEIAVTLLKMNDDGILVLDKTVHFHIEPFEGANLEPEALAFN 78

Query: 64  GITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAELQR--I 113
           GI     L+   S    F E +              +  +AHNA FD+ F+N  ++R  +
Sbjct: 79  GIDPTNPLRGAVSEKEAFLEIFKTVKKGQKASDCHRSIIVAHNAAFDLSFVNKAIERNDL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT ++A          L   CK  GI   ++  H AL D+   ++++  
Sbjct: 139 KRSPFHPFASFDTATLAGLSI--GHTVLAKACKMAGIDFDNKEAHSALYDTERTAELFCH 196

Query: 174 MMVGGSQIN 182
           ++     + 
Sbjct: 197 IVNRWKALG 205


>gi|323462903|pdb|3NGY|A Chain A, Crystal Structure Of Rnase T (E92g Mutant)
 gi|323462904|pdb|3NGY|B Chain B, Crystal Structure Of Rnase T (E92g Mutant)
 gi|323462905|pdb|3NGY|C Chain C, Crystal Structure Of Rnase T (E92g Mutant)
 gi|323462906|pdb|3NGY|D Chain D, Crystal Structure Of Rnase T (E92g Mutant)
 gi|323462908|pdb|3NGZ|A Chain A, Crystal Structure Of Rnase T In Complex With A
           Non-Preferred Ssdna (Gc) With One Mg In The Active Site
 gi|323462909|pdb|3NGZ|B Chain B, Crystal Structure Of Rnase T In Complex With A
           Non-Preferred Ssdna (Gc) With One Mg In The Active Site
          Length = 235

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 33  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 92

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         +    +   IF                 +AHNA FD  F+ A 
Sbjct: 93  EALAFNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 152

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   
Sbjct: 153 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 210

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 211 AVLFCEIVNRWKRLG 225


>gi|171742687|ref|ZP_02918494.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
 gi|171278301|gb|EDT45962.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
          Length = 328

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 13/213 (6%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N     V D ETTGL+  + DR IEIG V +          +  +  + R     A  +H
Sbjct: 13  NSKGYAVVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLIRVH-RDI--GAQWIH 69

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSR 122
            I+   L   P F  I  E  D    +   ++AHN  FD  F+ +E +R+  D P++   
Sbjct: 70  HISAVELIHAPEFEGIARELRDLLAGR--VFVAHNVAFDSKFLLSEYRRLGTDIPVNSHT 127

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++ T+ ++R         L   C+ +GI       H AL D+H  + +  ++M    + +
Sbjct: 128 MLCTMKLSRSLIGVG--SLADCCREFGIDNED--AHSALSDAHATALLLGRLMDADPEWS 183

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            G++   D   +E  +  P ++  +R + L  R
Sbjct: 184 -GWRRRLD-AAEEAGEHWPELTSFERREWLPRR 214


>gi|239636871|ref|ZP_04677870.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           warneri L37603]
 gi|239597545|gb|EEQ80043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           warneri L37603]
          Length = 902

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 8/176 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG     D II+IG   +        T+   +        P    L  I + 
Sbjct: 6   YAVVDLETTGNQLDYDDIIQIGITFVRQNKIIG-TYHSMIR-TDLDIPPFIQALTSIEET 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  + +    E    ++AHN  FD+ FI    +  N     P R++DTL 
Sbjct: 64  MLEKAPYFKEIAHDIYQQLQE--CVFVAHNVAFDLNFIKKAFKNCNIKY-RPKRVLDTLE 120

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           + +   P      L+ L + + I +++   H A  D+   + + IK      Q+  
Sbjct: 121 LFKIAFPTDKSYQLSELAEAHDIPLNN--AHRADEDATTTAQLMIKAFEKFEQLPL 174


>gi|323340217|ref|ZP_08080481.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           ruminis ATCC 25644]
 gi|323092408|gb|EFZ35016.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           ruminis ATCC 25644]
          Length = 180

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 13/192 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  + FD ET   ++K +    +    + +    +  +   + P         + +HGI 
Sbjct: 1   MNFVAFDFETA--NAKRNSACSLALTVVQNNQIVDELYS-LINPKT-NFDYRNIAIHGIK 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P FS ++     FF  + +  +AHNA FD   +   L++        + +IDT
Sbjct: 57  PQMVADSPDFSELWPHIESFFTPE-SLVVAHNAPFDCSVLTRTLEKYGIAAPHFN-VIDT 114

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +  +++ +    N L++LC+   I ++H   H AL DS   + + +  +      NFG  
Sbjct: 115 VKTSKQFYDFQDNKLDTLCQNLDIDLAHH--HNALDDSQACAKILLSQLQ-----NFGSD 167

Query: 187 TNEDRFFKEEKK 198
           T +   +K  +K
Sbjct: 168 TLKSFIYKYPRK 179


>gi|71734762|ref|YP_276473.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555315|gb|AAZ34526.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 204

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+    + R  EI  V +++  +    FQ  +   G +       L GI+
Sbjct: 4   RIAVIDFETTGISPGHSCRATEIAVV-IMEQGRIVELFQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRKL--EQSFACS 117

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +ARR  P    + L +L     +  + +  H A+ D+ + +++   + 
Sbjct: 118 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 166


>gi|332343370|gb|AEE56704.1| ribonuclease T [Escherichia coli UMNK88]
          Length = 215

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 20/196 (10%)

Query: 5   NKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNS 56
           N+ R    +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    
Sbjct: 12  NRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQ 71

Query: 57  PEALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINA 108
           PEAL  +GI         + +  +   IF                 +AHNA FD  F+ A
Sbjct: 72  PEALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMA 131

Query: 109 ELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +R  + ++P  P    DT ++A       +  L+  C+  G+       H AL D+  
Sbjct: 132 AAERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTER 189

Query: 167 LSDVYIKMMVGGSQIN 182
            + ++ +++    ++ 
Sbjct: 190 TAVLFCEIVNRWKRLG 205


>gi|320322651|gb|EFW78744.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330564|gb|EFW86543.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 204

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+    + R  EI  V +++  +    FQ  +   G +       L GI+
Sbjct: 4   RIAVIDFETTGISPGHSCRATEIAVV-IMEQGRIVELFQSLMN-AGVRIPAFIEGLTGIS 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  PS   +  +  DF        +AHNA FD  F + EL RI +          +
Sbjct: 62  NNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 117

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +ARR  P    + L +L     +  + +  H A+ D+ + +++   + 
Sbjct: 118 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 166


>gi|323462912|pdb|3NH0|A Chain A, Crystal Structure Of Rnase T In Complex With A
           Non-Preferred Ssdna (Aac)
 gi|323462913|pdb|3NH0|B Chain B, Crystal Structure Of Rnase T In Complex With A
           Non-Preferred Ssdna (Aac)
 gi|323462916|pdb|3NH1|A Chain A, Crystal Structure Of Rnase T In Complex With A Preferred
           Ssdna (Tagg) With Two Mg In The Active Site
 gi|323462917|pdb|3NH1|B Chain B, Crystal Structure Of Rnase T In Complex With A Preferred
           Ssdna (Tagg) With Two Mg In The Active Site
 gi|323462918|pdb|3NH1|C Chain C, Crystal Structure Of Rnase T In Complex With A Preferred
           Ssdna (Tagg) With Two Mg In The Active Site
 gi|323462919|pdb|3NH1|D Chain D, Crystal Structure Of Rnase T In Complex With A Preferred
           Ssdna (Tagg) With Two Mg In The Active Site
 gi|323462924|pdb|3NH2|A Chain A, Crystal Structure Of Rnase T In Complex With A Stem Dna
           With A 3' Overhang
 gi|323462925|pdb|3NH2|B Chain B, Crystal Structure Of Rnase T In Complex With A Stem Dna
           With A 3' Overhang
 gi|323462928|pdb|3NH2|E Chain E, Crystal Structure Of Rnase T In Complex With A Stem Dna
           With A 3' Overhang
 gi|323462929|pdb|3NH2|F Chain F, Crystal Structure Of Rnase T In Complex With A Stem Dna
           With A 3' Overhang
          Length = 235

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 33  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 92

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +   IF                 +AHNA FD  F+ A 
Sbjct: 93  EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 152

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   
Sbjct: 153 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 210

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 211 AVLFCEIVNRWKRLG 225


>gi|296102681|ref|YP_003612827.1| ribonuclease T [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295057140|gb|ADF61878.1| ribonuclease T [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 216

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 22/202 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEEGWLTPDTTLHFHVEPFEGANLQP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        E N      +AHNA FD  F  A 
Sbjct: 73  EALAFNGIDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCSRAIMVAHNATFDHSFTMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L+  C   GI       H AL D+   
Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACITAGIEFDGTQAHSALYDTERT 190

Query: 168 SDVYIKMM-----VGGSQINFG 184
           ++++ +++     +GG  +  G
Sbjct: 191 AELFCEIVNRWKRLGGWPLAMG 212


>gi|261339587|ref|ZP_05967445.1| ribonuclease T [Enterobacter cancerogenus ATCC 35316]
 gi|288318408|gb|EFC57346.1| ribonuclease T [Enterobacter cancerogenus ATCC 35316]
          Length = 216

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 22/202 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLTPDTTLHFHVEPFEGANLQP 72

Query: 58  EALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAE 109
           EAL  +GI     L+   S        +    +         A  +AHNA FD  F  A 
Sbjct: 73  EALAFNGIDPKNPLRGAVSEYDALHAIFKMVRKGMKDNDCSRAIMVAHNATFDHSFTMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L+  C   GI       H AL D+   
Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACITAGIEFDGTQAHSALYDTERT 190

Query: 168 SDVYIKMM-----VGGSQINFG 184
           ++++ +++     +GG  +  G
Sbjct: 191 AELFCEIVNRWKRLGGWPLPMG 212


>gi|77461145|ref|YP_350652.1| exonuclease [Pseudomonas fluorescens Pf0-1]
 gi|77385148|gb|ABA76661.1| putative exonuclease [Pseudomonas fluorescens Pf0-1]
          Length = 203

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 9/169 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V L +     R +Q  +   G +      +L GI+
Sbjct: 3   RIAVIDFETTGISPSSSCRATEIAVVMLENGRIVER-YQSLMN-AGVRIPAFIEQLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  L+  PS   + +E  +F        +AHNA FD  F + EL RI +  L       +
Sbjct: 61  NAMLRTAPSAEKVMNEVNEFVGC--TPLLAHNAAFDQKFWDFELGRIKRTRLQNFA--CS 116

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L +ARR  P +  + L +L     +       H A+ D+ + +++ + +
Sbjct: 117 LLLARRLMPAAPNHKLGTLTTFAQLP-HTGQAHRAMADAEMAANLMVHL 164


>gi|269836971|ref|YP_003319199.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM
           20745]
 gi|269786234|gb|ACZ38377.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM
           20745]
          Length = 658

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 8/152 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIETTGL     RIIE+ A+      +    F   + P  R       KL GI + 
Sbjct: 88  FVVIDIETTGLRPLRQRIIEVAAIRYRGGRRQG-VFSTLVNPE-RPVPAYIRKLTGIDET 145

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  +  E   F  +     I +N +FD+ F+NAEL+R+ + PL   R +D L 
Sbjct: 146 ALAGAPVFRRVADELTAFLGDD--LLIGYNVEFDIAFLNAELKRLGRPPLINPR-LDLLP 202

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHG 159
           ++ +  P  R   L++ C   G+    R +H 
Sbjct: 203 LSTQLIPGMRRSGLDAACLALGLEF--RERHR 232


>gi|315638420|ref|ZP_07893597.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis JV21]
 gi|315481411|gb|EFU72038.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis JV21]
          Length = 260

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/194 (27%), Positives = 97/194 (50%), Gaps = 16/194 (8%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            R NK++     + DIE+TG    + +I+EIGAV++ ++ + +R F+ F+  +  +    
Sbjct: 62  TRTNKIKEQVFCIVDIESTGG-INSGQILEIGAVKIQNHKELDR-FESFVKVD--EIPLN 117

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             +L GI    +KD P+ + +   F  F N  ++ ++AHN KFD  FI+  L       L
Sbjct: 118 ITELTGIELNMVKDAPNLTRVLEAFRLFLN--DSVFVAHNVKFDYNFISKSLYECGFGIL 175

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +R I T+  A+    SS   L++L +   I  +H   H AL D+   ++++   +   
Sbjct: 176 L-NRKICTIDFAQCCIESSHYKLDALKEILKIESTH---HRALNDALAAAEIFKYCL--- 228

Query: 179 SQINFGFKTNEDRF 192
           S++    KT E+  
Sbjct: 229 SKLPPHIKTTEELI 242


>gi|295106393|emb|CBL03936.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 1031

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 11/170 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTG    +D + +I A  +      +  F  F+ P G+    +   L  I DE
Sbjct: 47  IVVVDTETTGFSFNHDELTQIAAARMEQGRIVD-WFITFVNP-GKPIPEDVAYLTDIHDE 104

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P  S   SE  +F    +A+ +AHNA+FD  F        +  PL  +  ID+L 
Sbjct: 105 DVADAPLPSEALSELAEFVG--DAKIVAHNAEFDRTFTTRH---PSGYPLLENTWIDSLD 159

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +AR   P  + + L  L K +G  +S    H A  D      ++  ++  
Sbjct: 160 LARIALPRLKSHRLLDLVKAFGAPLS---THRADADVEATCSIFRILLAA 206


>gi|261750330|ref|ZP_05994039.1| DNA polymerase III [Brucella suis bv. 5 str. 513]
 gi|261740083|gb|EEY28009.1| DNA polymerase III [Brucella suis bv. 5 str. 513]
          Length = 233

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 9/218 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++    +    + +SP+A  
Sbjct: 18  IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 76  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +  T+  ARR        L+    + G+  +   +HGAL D++L + +Y+        +
Sbjct: 134 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQGV 188

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                        +  K  P     +  +    R +  
Sbjct: 189 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRGSAA 226


>gi|117620471|ref|YP_857153.1| ribonuclease T [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561878|gb|ABK38826.1| ribonuclease T [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 240

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G +++ D ++EI A    ++   +   ++ F   + P  G     
Sbjct: 32  RFRGFYPVVIDVETAGFNARTDALLEIAAYTLKMDEQGWLVPDQIFHFHVEPFEGANLEK 91

Query: 58  EALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAE 109
            AL+  GI     L+   S     +E +    +         A  +AHNA FD GF+ A 
Sbjct: 92  AALEFTGIDPFNPLRGAVSEKEALTEIFKGIRKGMKEQDCGRAIIVAHNATFDHGFVMAA 151

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P    DT +++       +  L   C+   I   ++  H AL D+   
Sbjct: 152 AERAGLKRNPFHPFATFDTAALSGLAL--GQTVLAKACQSARIPFDNKEAHSALYDTERT 209

Query: 168 SDVYIKMMVGGSQIN 182
           ++++  ++     + 
Sbjct: 210 TELFCHIVNRWKSLG 224


>gi|319788791|ref|YP_004090106.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
 gi|315450658|gb|ADU24220.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
          Length = 177

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 9/180 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R IVFD+ET   +  N+R+  IG   + + + T   F  ++ P          +L GI  
Sbjct: 3   RYIVFDVETP--NRYNNRMSAIGIAVIENGAVTEEYFS-YVDPQTY-FDRFNTQLTGINK 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P+F  ++       +       AHNA FD+G +   L+    +  +  +   T+
Sbjct: 59  YTVSGAPTFPELWERIEPIMSSG--VLAAHNAVFDLGVLKKCLKAYGIEWKNTVKYCCTV 116

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            + RR  P   + LN LC+ YGI + H   H A  DS   +D+ ++    G+Q     +T
Sbjct: 117 QMGRRVLPGISHKLNVLCEHYGIALDH---HKADSDSRACADILLRYFESGAQEREHIRT 173


>gi|260582581|ref|ZP_05850371.1| ribonuclease T [Haemophilus influenzae NT127]
 gi|319775811|ref|YP_004138299.1| ribonuclease T [Haemophilus influenzae F3047]
 gi|329123653|ref|ZP_08252213.1| ribonuclease T [Haemophilus aegyptius ATCC 11116]
 gi|260094392|gb|EEW78290.1| ribonuclease T [Haemophilus influenzae NT127]
 gi|317450402|emb|CBY86618.1| ribonuclease T [Haemophilus influenzae F3047]
 gi|327469852|gb|EGF15317.1| ribonuclease T [Haemophilus aegyptius ATCC 11116]
          Length = 229

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +          + Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVM 133

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R    ++P  P  + DT S+A       +  L   C+   I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMMVGGSQIN 182
             + ++  M+     + 
Sbjct: 192 RTAKLFCYMVNHLKDLG 208


>gi|315636786|ref|ZP_07892012.1| DNA polymerase III epsilon subunit [Arcobacter butzleri JV22]
 gi|315478912|gb|EFU69619.1| DNA polymerase III epsilon subunit [Arcobacter butzleri JV22]
          Length = 272

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 9/171 (5%)

Query: 6   KMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +      DIET G   K   +IIE+GAV+  +  +   +F   +    ++  P   ++  
Sbjct: 80  EQTFCFVDIETNGGTPKKGFQIIELGAVKYKNG-EVLDSFNSLV--FAKEIPPYIQEVTK 136

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT   L+  P    +  +F +F  +    +IAH+ KFD  FI+   ++ +   L  +R +
Sbjct: 137 ITPAMLETAPRIEKVLKDFKEFLGDD--VFIAHDIKFDYNFISDSFEKYSLGKLL-NRKL 193

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            T+ +A+R   S +  L+SL +   I I +   H A  D+     V+ K +
Sbjct: 194 CTIDLAKRTIKSEKYGLSSLKELLNIDIENH--HRAYYDALTTQIVFEKCL 242


>gi|304397653|ref|ZP_07379530.1| ribonuclease T [Pantoea sp. aB]
 gi|304354825|gb|EFM19195.1| ribonuclease T [Pantoea sp. aB]
          Length = 222

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 86/212 (40%), Gaps = 22/212 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G +++ D ++EI A+    +   + + ++T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL   GI         + +  +  +IF        +        +AHNA FD+ F++A 
Sbjct: 73  EALAFTGIDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFDLNFMSAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L   C   G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFATFDTAALSGLVL--GQTVLAKACIAAGMEFDSTQAHSALYDTQQT 190

Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFK 194
           + ++ +++     +GG  + F     E     
Sbjct: 191 ATLFCELVNRWKRLGGWPLPFAEGDAEASASA 222


>gi|313500723|gb|ADR62089.1| DNA polymerase III, epsilon subunit [Pseudomonas putida BIRD-1]
          Length = 203

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 10/194 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  E+  V +L+  +    +Q  +   G         L GIT
Sbjct: 3   RIAVIDFETTGISPGTGCRATEVAVV-MLEGGRIVERYQSLMN-AGVPVPAFVAGLTGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+  P    + +E  +F        +AHNA FD  F + EL RI +    P     +
Sbjct: 61  TAMLRSAPPVEKVMNEVAEFVG--GTPLLAHNAAFDQKFWDYELSRIGRSRSQPFA--CS 116

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           L ++RR  P +  + L +L +  G+     + H A+ D+ + +++   +  G  + + G 
Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLP-DTGTAHRAMADAEMAANLLQHL-AGVLRQDHGV 174

Query: 186 KTNEDRFFKEEKKT 199
           +          +KT
Sbjct: 175 QQLSHELLCRLQKT 188


>gi|148977600|ref|ZP_01814176.1| ribonuclease T [Vibrionales bacterium SWAT-3]
 gi|145963115|gb|EDK28383.1| ribonuclease T [Vibrionales bacterium SWAT-3]
          Length = 211

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 21/194 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI A+ L      +     T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVIDVETAGFNAETDALLEICAITLKMDENGDLQPASTLHFHIEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                 AL  +GI D F  L+   S      E +    ++        A  +AHNA FD+
Sbjct: 68  ANIEQAALDFNGIKDPFSPLRGAVSEQEALKEIYKLVRKEQKASDCSRAIMVAHNATFDL 127

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+NA  +R      P  P    DT +++   +   +  L   C+  G+   ++  H AL
Sbjct: 128 NFVNAASERCKLKRVPFHPFATFDTAALSGLAY--GQTVLAKACRTAGMEFDNKEAHSAL 185

Query: 162 LDSHLLSDVYIKMM 175
            D+   ++++  ++
Sbjct: 186 YDTQKTTELFCGIV 199


>gi|261323134|ref|ZP_05962331.1| DNA polymerase III [Brucella neotomae 5K33]
 gi|261299114|gb|EEY02611.1| DNA polymerase III [Brucella neotomae 5K33]
          Length = 233

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 9/218 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++    +    + +SP+A  
Sbjct: 18  IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 76  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
               T+  ARR        L+    + G+  +   +HGAL D++L + +Y+        +
Sbjct: 134 PFYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQGV 188

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                        +  K  P     +  +    R +  
Sbjct: 189 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 226


>gi|21684660|gb|AAL87524.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps]
          Length = 201

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 5/157 (3%)

Query: 19  LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSS 78
           L  +  R+ E+G VE+     T   F  ++ P  ++ +  A  +HG+ DEFL  +P+F +
Sbjct: 1   LSPRYHRLAEVGCVEIAGGRITGNYFHSYINP-CQRMTRGAQAVHGLKDEFLATQPTFGA 59

Query: 79  IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRIIDTLSIARRKHPS 136
           I      F     A  + HN  FD+ F++A L      P     + +IDT+    ++   
Sbjct: 60  IAQRLLYFL--CGAVLVGHNLTFDLNFLDAGLVSAGFMPAARYCAGVIDTMRHLAQRGSR 117

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R  L+ LC R G+    R++HGAL D+ LL++ ++ 
Sbjct: 118 RRFSLDDLCDRLGVRRGERARHGALEDAVLLAEAFVA 154


>gi|218708963|ref|YP_002416584.1| ribonuclease T [Vibrio splendidus LGP32]
 gi|218321982|emb|CAV17988.1| Ribonuclease T (RNase T) [Vibrio splendidus LGP32]
          Length = 241

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI A+ L      +     T    + P  G
Sbjct: 35  LTLKKRFRGYFPVVIDVETAGFNAETDALLEICAITLRMDENGDLHPASTLHFHIEPFEG 94

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                 AL  +GI D F  L+   S      E +    ++        A  +AHNA FD+
Sbjct: 95  ANIEQAALDFNGIKDPFSPLRGAVSEQEALKEIYKLVRKEQKASDCSRAIMVAHNATFDL 154

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+NA  +R      P  P    DT +++   +   +  L   C+  G+   ++  H AL
Sbjct: 155 NFVNAASERCKLKRVPFHPFATFDTAALSGLAY--GQTVLAKACRTAGMEFDNKEAHSAL 212

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 213 YDTQKTTELFCGIVNKWKALG 233


>gi|308180572|ref|YP_003924700.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308046063|gb|ADN98606.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 934

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 79/174 (45%), Gaps = 9/174 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            K      V DIETTG   K  DRII+IG   + +    N TF   + P           
Sbjct: 1   MKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFVKNNKIIN-TFATDVNP-LTTVPAVIEN 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GI++  ++  P F  +    +     Q   ++AHN  FD+ FIN+ELQR+    L P 
Sbjct: 59  LTGISNARVRKAPPFDDLAGTVYSLL--QGTVFVAHNVNFDLPFINSELQRVGYPEL-PI 115

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +DT+S+++   P+ S   L  L     I   H   H A  D+   + ++I +
Sbjct: 116 QAVDTVSLSQILLPTASSFRLRDLSHLLAID--HNHPHSADSDAIATAHLFITL 167


>gi|319896653|ref|YP_004134846.1| ribonuclease t [Haemophilus influenzae F3031]
 gi|317432155|emb|CBY80506.1| ribonuclease T [Haemophilus influenzae F3031]
          Length = 229

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +          + Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVM 133

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R    ++P  P  + DT S++       +  L   C    I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLSGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMMVGGSQIN 182
             ++++  M+     + 
Sbjct: 192 RTAELFCYMVNHLKDLG 208


>gi|145299434|ref|YP_001142275.1| ribonuclease T [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142852206|gb|ABO90527.1| ribonuclease T [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 223

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G +++ D ++EI A    ++   +   ++ F   + P  G     
Sbjct: 11  RFRGFYPVVIDVETAGFNARTDALLEIAAYTLKMDEDGWLAPDQVFHFHVEPFEGANLEK 70

Query: 58  EALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAE 109
            AL+  GI     L+   S     +E +    +         A  +AHNA FD GF+ A 
Sbjct: 71  AALEFTGIDPFNPLRGAVSEKEALTEIFKGIRKGMKESDCNRAIIVAHNATFDHGFVMAA 130

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P    DT +++       +  L   C+   I   ++  H AL D+   
Sbjct: 131 AERAGLKRNPFHPFATFDTAALSGLAL--GQTVLAKACQSARIPFDNKEAHSALYDTERT 188

Query: 168 SDVYIKMMVGGSQIN 182
           ++++  ++     + 
Sbjct: 189 TELFCHIVNRWKSLG 203


>gi|148549845|ref|YP_001269947.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1]
 gi|148513903|gb|ABQ80763.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1]
          Length = 211

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 10/194 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  E+  V +L+  +    +Q  +   G         L GIT
Sbjct: 3   RIAVIDFETTGISPGTGCRATEVAVV-MLEGGRIVERYQSLMN-AGVPVPAFVAGLTGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+  P    + +E  +F        +AHNA FD  F + EL RI +    P     +
Sbjct: 61  TAMLRSAPPVDKVMNEVAEFVG--GTPLLAHNAAFDQKFWDYELSRIGRSRSQPFA--CS 116

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           L ++RR  P +  + L +L +  G+     + H A+ D+ + +++   +  G  + + G 
Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLP-DTGTAHRAMADAEMAANLLQHL-AGVLRQDHGV 174

Query: 186 KTNEDRFFKEEKKT 199
           +          +KT
Sbjct: 175 QQLSHELLCRLQKT 188


>gi|237794676|ref|YP_002862228.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum Ba4 str. 657]
 gi|229260614|gb|ACQ51647.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum Ba4 str. 657]
          Length = 855

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 49/176 (27%), Positives = 95/176 (53%), Gaps = 8/176 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +    +VFD+E+TG+++  D I++I  +++ +  +   +FQ FL P  +K+  ++  +
Sbjct: 489 ELDNENVVVFDVESTGINTTEDEIVQIAGIKINNKGEAIESFQRFLNP--KKSVGDSYLV 546

Query: 63  HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           HG +D+FLK+   +   +  +F  F   ++   + HN  FD+  +N+EL+R++ +     
Sbjct: 547 HGFSDQFLKENGENKKVVLKDFLKFI--KDTVIVGHNVTFDISILNSELERLSLEKASFK 604

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
              DTL IARR +PS + + L +L K +      +S H A+ D     D+ + M+ 
Sbjct: 605 TYYDTLDIARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDILMVMLR 658


>gi|170768829|ref|ZP_02903282.1| ribonuclease T [Escherichia albertii TW07627]
 gi|170122377|gb|EDS91308.1| ribonuclease T [Escherichia albertii TW07627]
          Length = 215

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +   IF                 +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPNDPERGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMEFDSNQAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|24374295|ref|NP_718338.1| ribonuclease T [Shewanella oneidensis MR-1]
 gi|54036332|sp|Q8EDJ2|RNT_SHEON RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|24348836|gb|AAN55782.1|AE015715_1 ribonuclease T [Shewanella oneidensis MR-1]
          Length = 222

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKN 55
           K++ R    +V D+ET G +S+ D ++EI    +++ D      ++T    + P  G   
Sbjct: 11  KHRFRGYFPVVIDVETAGFNSQTDALLEIAVTLLKMDDEGLLGIDKTLHFHIEPFEGANL 70

Query: 56  SPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107
            PEAL  +GI         + +K +F  IF          +      +AHNA FD GF++
Sbjct: 71  EPEALAFNGIDPTNPLRGAVSEKDAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVS 130

Query: 108 AELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
             ++R    + P  P    DT ++A          L   C   GI   ++  H AL D+ 
Sbjct: 131 KAIERCDLKRSPFHPFATFDTATLAGLAI--GHTVLAKACIMAGIPFDNKEAHSALYDTE 188

Query: 166 LLSDVYIKMMVGGSQIN 182
             ++++  ++     + 
Sbjct: 189 RTAELFCYIVNRWKTLG 205


>gi|308186683|ref|YP_003930814.1| ribonuclease T [Pantoea vagans C9-1]
 gi|308057193|gb|ADO09365.1| ribonuclease T [Pantoea vagans C9-1]
          Length = 222

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 85/202 (42%), Gaps = 22/202 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G +++ D ++EI A+    +   + + ++T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL   GI         + +  +  +IF        +        +AHNA FD+ F++A 
Sbjct: 73  EALAFTGIDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFDLNFMSAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L   C   G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFATFDTAALSGLVL--GQTVLAKACIAAGMEFDSTQAHSALYDTQQT 190

Query: 168 SDVYIKMM-----VGGSQINFG 184
           + ++ +++     +GG  + F 
Sbjct: 191 ATLFCELVNRWKRLGGWPLPFA 212


>gi|227111797|ref|ZP_03825453.1| ribonuclease T [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 223

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 83/207 (40%), Gaps = 22/207 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++E+ AV    +   + + + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
            AL  +GI         + +  +   IF        +Q       +AHNA FD  F+ A 
Sbjct: 73  AALAFNGIDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAA 132

Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P    DT +++       +  L   C   GI       H AL D++  
Sbjct: 133 AERCSLKRNPFHPFATFDTAALSGLVL--GQTVLAKACITAGIAFDSSQAHSALYDTNQT 190

Query: 168 SDVYIKMM-----VGGSQINFGFKTNE 189
           + ++ +++     +GG  I     + E
Sbjct: 191 ALLFCELVNRWKRLGGWPIALEENSLE 217


>gi|322494373|emb|CBZ29674.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 347

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 85/228 (37%), Gaps = 63/228 (27%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL---------------------------------D 36
           +V D+ETTG  +  D I+E+   EL                                   
Sbjct: 108 VVVDLETTGFSATADEILEVACAELRWTPSSHTSSTGPKHTAPCAPSLGEQSVCGVIEGL 167

Query: 37  YSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA--- 92
           +++  R F  ++ P + R+ S  A  +HGIT E ++    +  + SE   +     A   
Sbjct: 168 WTRGGRVFHRYVRPSDPRRISAAATAVHGITWETVQHCSPWPVVASELVAYMVLVGADGP 227

Query: 93  ---------------------EWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTLSI 129
                                  +AHNA FD  F+   L+R         +     T   
Sbjct: 228 FSASAQLEAAQAGGHRAVQLPPLVAHNASFDARFLEHHLRRCGYQIFWQPQYPLTCTRQW 287

Query: 130 ARRKHPSSRNDLNSLCKRYGIT-ISHRSK--HGALLDSHLLSDVYIKM 174
           A+  +P   N+L++LC   GI   + R+   H AL D+ L + ++++M
Sbjct: 288 AQVAYPHLANNLDALCAFLGIDGAADRAANGHDALTDATLTALLFLQM 335


>gi|265989936|ref|ZP_06102493.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1]
 gi|263000605|gb|EEZ13295.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1]
          Length = 233

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 9/218 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++    +    + +SP+A  
Sbjct: 18  IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 76  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +  T+  ARR        L+    + G+  +   +HGAL D++L + +Y+        +
Sbjct: 134 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQDV 188

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                        +  K  P     +  +    R +  
Sbjct: 189 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 226


>gi|254556626|ref|YP_003063043.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1]
 gi|254045553|gb|ACT62346.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1]
          Length = 934

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 79/174 (45%), Gaps = 9/174 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            K      V DIETTG   K  DRII+IG   + +    N TF   + P           
Sbjct: 1   MKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFVKNNKIIN-TFATDVNP-LTTVPAVIEN 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GI++  ++  P F  +    +     Q   ++AHN  FD+ FIN+ELQR+    L P 
Sbjct: 59  LTGISNARVRKAPPFDDLAGTVYSLL--QGTVFVAHNVNFDLPFINSELQRVGYPEL-PI 115

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +DT+S+++   P+ S   L  L     I   H   H A  D+   + ++I +
Sbjct: 116 QAVDTVSLSQILLPTASSFRLRDLSHLLAID--HNHPHSADSDAIATAHLFITL 167


>gi|311033291|ref|ZP_07711381.1| Exonuclease [Bacillus sp. m3-13]
          Length = 216

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 9/191 (4%)

Query: 5   NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKL 62
           +K+   VFD ETTG + +++DR+IE+GAV++ +    + + +Q ++ PN R+   E ++L
Sbjct: 25  DKLEFTVFDTETTGFNVARDDRLIELGAVKIKNLQVIDNSAYQTYINPN-RQIPREIIEL 83

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             IT E   + P      ++  +  N+ +  ++ H   FD+  I AEL+R N    +P +
Sbjct: 84  TSITQEQTDEAPQALEAITKLTNMANQTSVCYVGHYLAFDMQAIQAELKRNNLKWKNP-K 142

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +DTL +     PS    DL    + +G  I  R  H AL D+   + ++ +++      
Sbjct: 143 SLDTLDLIGYIAPSYDMRDLEKYARDFGTRIYQR--HSALGDALTTAYLFTELL--QLSQ 198

Query: 182 NFGFKTNEDRF 192
           + G KT  D  
Sbjct: 199 DRGLKTWGDLL 209


>gi|291531228|emb|CBK96813.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium siraeum 70/3]
          Length = 458

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 17/190 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRK--NSPEALKLHGI 65
            +V+D+ETTGL+S+   +I+IGAV+++D     ++TF+  + P   K   S    K+ GI
Sbjct: 271 FVVYDLETTGLNSEFHAVIQIGAVKVVDGVVDESQTFEELVNPKYSKVSVSDNITKITGI 330

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE  K+      +  EF  F  +       +NA FD  F+    +  N   +  ++  D
Sbjct: 331 TDEEAKNARQVWEVIPEFVKFIGDDTLAGF-NNAAFDSKFLERAGRHSNI--IITNKQFD 387

Query: 126 TLSIARRKHPSSR-----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +  A+R           ++LN+  + +GI       H AL D+   + VYIK+     Q
Sbjct: 388 IMKYAKRIKKKCNLEINGDELNNYAEYFGIKNE--KAHTALSDAITTAKVYIKL----RQ 441

Query: 181 INFGFKTNED 190
           ++ G  ++E+
Sbjct: 442 LDEGKSSSEN 451


>gi|153829541|ref|ZP_01982208.1| ribonuclease T [Vibrio cholerae 623-39]
 gi|148875001|gb|EDL73136.1| ribonuclease T [Vibrio cholerae 623-39]
          Length = 243

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI AV L      +     T    + P  G
Sbjct: 27  LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 86

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                 AL+  GI D F  L+   S      E +    ++        A  +AHNA FD 
Sbjct: 87  ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYRLVRKEQKAADCSRAIIVAHNAHFDH 146

Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+ A  +R      P  P    DT +++       +  L   CK  G+   +R  H AL
Sbjct: 147 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 204

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 205 YDTQKTAELFCTIVNQWKALG 225


>gi|15602853|ref|NP_245925.1| ribonuclease T [Pasteurella multocida subsp. multocida str. Pm70]
 gi|13431828|sp|P57896|RNT_PASMU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|12721315|gb|AAK03072.1| Rnt [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 220

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 87/192 (45%), Gaps = 20/192 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCPN-GR 53
           + K++ R    ++ D+ET G ++K D ++E+ A+ +          ++T    + P  G 
Sbjct: 13  LLKHRFRGYFPVIIDVETAGFNAKTDALLELAAITVKMNEDGLLVPDQTCHFHIEPFAGA 72

Query: 54  KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105
             +PE+L+ +GI     L+   S +   +E +          + Q +  +AHNA FD  F
Sbjct: 73  NINPESLQFNGIDIHNPLRGAVSETVAITELFKMVRKAQKAADCQRSIIVAHNAAFDQSF 132

Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A  +R    ++P  P  + DT +++       +  L   C+   I    +  H AL D
Sbjct: 133 LMAAAERTGVKRNPFHPFGMFDTATLSGFMF--GQTVLVKACQAAQIAFDGKQAHSALYD 190

Query: 164 SHLLSDVYIKMM 175
           +   ++++  M+
Sbjct: 191 TERTAELFCYMV 202


>gi|8134659|sp|O54364|RNT_PASHA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|2731432|gb|AAB93471.1| RNAse T [Mannheimia haemolytica]
          Length = 216

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 22/208 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGR 53
           + K++ R    +V D+ET GL+++ D ++E+ A+ L    +     ++     + P  G 
Sbjct: 12  LLKHRFRGYLPVVIDVETAGLNAQTDALLELAAITLKMDEQGYLVPDQQCHFHIAPFEGA 71

Query: 54  KNSPEALKLHGIT-DEFLKDKPSFSSIFS----EFWDFFNEQNA---EWIAHNAKFDVGF 105
             +PE+LK +GI  D  L+   + +               EQ       +AHNA  D GF
Sbjct: 72  NINPESLKFNGIDIDNPLRGAVAENIAIPGMFIMVRKAMKEQGCQRGVIVAHNAASDPGF 131

Query: 106 IN-AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
              A ++RIN  +DP  P  + DT ++A   +   +  L   C+   I    +  H AL 
Sbjct: 132 FYRAAIKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQVAKIPFDGKQAHSALY 189

Query: 163 DSHLLSDVYIKMMVGGSQINFGFKTNED 190
           D+   ++++  M+     +  GF    D
Sbjct: 190 DTERTAELFCAMVNRLKDLG-GFPPLSD 216


>gi|319440229|ref|ZP_07989385.1| putative exonuclease [Corynebacterium variabile DSM 44702]
          Length = 186

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 9/176 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R++    +V D ETTGLD  +DRIIE+ A+ + +       F   + P GR        
Sbjct: 14  LRRSLRDCVVVDCETTGLDPDSDRIIEVAALRVREGRPVA-LFHRVVDP-GRPLPGFITS 71

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD+ ++  P    I  +   F        + HN  FD+ FI+AE+   +  P   S
Sbjct: 72  LTGLTDQQVRQAPPVGDILGDLSAFLAHD--TVVGHNVGFDLAFIDAEITTTHSTPRAAS 129

Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + T   AR   P     R  LN+L + +   + HR  H  + D     D+   +
Sbjct: 130 LSLCTAESARALVPRSRVGRYRLNTLAEAF--DLDHRPSHRTVSDVLATLDLLHYL 183


>gi|323163498|gb|EFZ49324.1| ribonuclease T [Escherichia coli E128010]
          Length = 215

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +   IF                 +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   
Sbjct: 133 AERVSLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|291295885|ref|YP_003507283.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279]
 gi|290470844|gb|ADD28263.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279]
          Length = 267

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 11/167 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V DIETTGL   +  IIE+  + L +  +T   F+  + P G    P   +L GI  + 
Sbjct: 90  VVLDIETTGLSPTDHEIIELALIRLENGRRTV--FERLVNP-GVLIPPFISRLTGIRSQD 146

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++D     ++  E W   +  NA  I  NA FD+GF+    +R+     +P  ++DT+  
Sbjct: 147 VRDAADIYTVLEEAWPLLD--NATLIIQNASFDLGFLQPRFKRLGYRLDNP--VVDTIHW 202

Query: 130 ARRKHPS-SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKM 174
           AR+  P  ++  L+SL   + +  I   ++H A+ D      V  +M
Sbjct: 203 ARKALPGLTKRGLDSLAWAFDLGPIP--ARHRAMGDVETTLQVAHEM 247


>gi|28378418|ref|NP_785310.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1]
 gi|28271254|emb|CAD64158.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1]
          Length = 934

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 79/174 (45%), Gaps = 9/174 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            K      V DIETTG   K  DRII+IG   + +    N TF   + P           
Sbjct: 1   MKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFVKNNKIIN-TFATDVNP-LTTVPAVIEN 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GI++  ++  P F  +    +     Q   ++AHN  FD+ FIN+ELQR+    L P 
Sbjct: 59  LTGISNARVRKAPPFDDLAGTVYSLL--QGTVFVAHNVNFDLPFINSELQRVGYPEL-PI 115

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +DT+S+++   P+ S   L  L     I   H   H A  D+   + ++I +
Sbjct: 116 QAVDTVSLSQILLPTASSFRLRDLSHLLAID--HNHPHSADSDAIATAHLFITL 167


>gi|312864644|ref|ZP_07724875.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei
           F0415]
 gi|311099771|gb|EFQ57984.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei
           F0415]
          Length = 823

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 11/176 (6%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K + R   V D+E T       +II++G V +++  +  +T+Q  + P+    +   
Sbjct: 1   MTDKKQGRKYAVVDLEATSAS-TTAQIIQVGIV-IVEQGQIVQTYQTDVNPHEA-LTQHI 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + L GITD+ L   P FS +  + +     Q+  ++AHN KFD   +  +L     +   
Sbjct: 58  IDLTGITDQQLAQAPDFSQVAGDIFQLI--QDCIFVAHNVKFDANLLAEQLFLEGYELRT 115

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           P   +DT+ +++   P+  R  L+ L K   + ++H   H A+ D++  + + I +
Sbjct: 116 P--RVDTVELSQVFFPTLERYRLSDLAKYLDLDLTH--AHTAIADAYATAQLLISI 167


>gi|300904499|ref|ZP_07122340.1| ribonuclease T [Escherichia coli MS 84-1]
 gi|300918020|ref|ZP_07134642.1| ribonuclease T [Escherichia coli MS 115-1]
 gi|301303165|ref|ZP_07209291.1| ribonuclease T [Escherichia coli MS 124-1]
 gi|300403565|gb|EFJ87103.1| ribonuclease T [Escherichia coli MS 84-1]
 gi|300414762|gb|EFJ98072.1| ribonuclease T [Escherichia coli MS 115-1]
 gi|300841574|gb|EFK69334.1| ribonuclease T [Escherichia coli MS 124-1]
 gi|315257547|gb|EFU37515.1| ribonuclease T [Escherichia coli MS 85-1]
          Length = 215

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +   IF                 +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|297249562|ref|ZP_06933263.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|297173431|gb|EFH32795.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|326554073|gb|ADZ88712.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90]
          Length = 235

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 9/218 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++    +    + +SP+A  
Sbjct: 20  IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 77

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 78  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 135

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +  T+  ARR        L+    + G+  +   +HGAL D++L + +Y+        +
Sbjct: 136 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQGV 190

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                        +  K  P     +  +    R +  
Sbjct: 191 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 228


>gi|254458194|ref|ZP_05071620.1| exonuclease [Campylobacterales bacterium GD 1]
 gi|207085030|gb|EDZ62316.1| exonuclease [Campylobacterales bacterium GD 1]
          Length = 272

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 12/202 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIET G      +IIEIGAV++ D    ++ F+  +    R+ +    ++ GI+ E
Sbjct: 69  FCIVDIETNGSKIDKHQIIEIGAVKVRDGVIIDK-FESLV--YCREINKHITEITGISVE 125

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             K+ P+   +  EF  F    NA ++AH+ KFD  FI+  +Q+I  +PL  +R I +L+
Sbjct: 126 DTKNAPNLKKVLYEFKSFLG--NAIFVAHDVKFDYKFISLSMQKIGLEPLL-NRSICSLA 182

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +A R   S R  L+ L     +   + + H A+ D      +++  +     ++   KT 
Sbjct: 183 LAERTIESYRYALSYLNDSLHL-NPNATHHRAMSDVITTYGLFMLSLHNLKSLDKDVKTA 241

Query: 189 EDRFFKEEKKTVPNISLLKRDK 210
           ED       K        KR K
Sbjct: 242 EDLI-----KFSKEAKRFKRPK 258


>gi|17988995|ref|NP_541628.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str.
           16M]
 gi|260756615|ref|ZP_05868963.1| DNA polymerase III [Brucella abortus bv. 6 str. 870]
 gi|260760045|ref|ZP_05872393.1| DNA polymerase III [Brucella abortus bv. 4 str. 292]
 gi|260763284|ref|ZP_05875616.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882432|ref|ZP_05894046.1| DNA polymerase III [Brucella abortus bv. 9 str. C68]
 gi|261216075|ref|ZP_05930356.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya]
 gi|261217238|ref|ZP_05931519.1| DNA polymerase III [Brucella ceti M13/05/1]
 gi|261220458|ref|ZP_05934739.1| DNA polymerase III [Brucella ceti B1/94]
 gi|261313312|ref|ZP_05952509.1| DNA polymerase III [Brucella pinnipedialis M163/99/10]
 gi|261318701|ref|ZP_05957898.1| DNA polymerase III [Brucella pinnipedialis B2/94]
 gi|261320109|ref|ZP_05959306.1| DNA polymerase III [Brucella ceti M644/93/1]
 gi|265986499|ref|ZP_06099056.1| DNA polymerase III [Brucella pinnipedialis M292/94/1]
 gi|265992959|ref|ZP_06105516.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether]
 gi|265996191|ref|ZP_06108748.1| DNA polymerase III [Brucella ceti M490/95/1]
 gi|17984832|gb|AAL53892.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str.
           16M]
 gi|260670363|gb|EEX57303.1| DNA polymerase III [Brucella abortus bv. 4 str. 292]
 gi|260673705|gb|EEX60526.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676723|gb|EEX63544.1| DNA polymerase III [Brucella abortus bv. 6 str. 870]
 gi|260871960|gb|EEX79029.1| DNA polymerase III [Brucella abortus bv. 9 str. C68]
 gi|260917682|gb|EEX84543.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya]
 gi|260919042|gb|EEX85695.1| DNA polymerase III [Brucella ceti B1/94]
 gi|260922327|gb|EEX88895.1| DNA polymerase III [Brucella ceti M13/05/1]
 gi|261292799|gb|EEX96295.1| DNA polymerase III [Brucella ceti M644/93/1]
 gi|261297924|gb|EEY01421.1| DNA polymerase III [Brucella pinnipedialis B2/94]
 gi|261302338|gb|EEY05835.1| DNA polymerase III [Brucella pinnipedialis M163/99/10]
 gi|262550488|gb|EEZ06649.1| DNA polymerase III [Brucella ceti M490/95/1]
 gi|262763829|gb|EEZ09861.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether]
 gi|264658696|gb|EEZ28957.1| DNA polymerase III [Brucella pinnipedialis M292/94/1]
          Length = 233

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 9/218 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++    +    + +SP+A  
Sbjct: 18  IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 76  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +  T+  ARR        L+    + G+  +   +HGAL D++L + +Y+        +
Sbjct: 134 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQGV 188

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                        +  K  P     +  +    R +  
Sbjct: 189 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 226


>gi|294083688|ref|YP_003550445.1| DNA polymerase III subunit epsilon [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663260|gb|ADE38361.1| DNA polymerase III, epsilon subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 730

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 12/181 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSP 57
           +  +++  +  D+ETTGL  + DRI++IGA+ +          +   ++ + P G     
Sbjct: 26  MPLSEVPLVSLDLETTGLKPQTDRIVQIGAIGVDVAVAADRAEDDHIEMLVDP-GIAVPA 84

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            +  +HGI D  L D    +        F N++    + +N  FD+ F+  E +R   + 
Sbjct: 85  ASTAVHGINDAMLADAKPIAVALPALRSFINKR--IILGYNIGFDLAFLTNEAKRQGLEW 142

Query: 118 LDPSRIIDTLSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                +           P +     DL++L   YG+ +  R  H AL D+ + + VY KM
Sbjct: 143 KWSGALCLRQLATVLLGPEAMLMIADLDALAAHYGVPVIGR--HTALGDATITAQVYHKM 200

Query: 175 M 175
           +
Sbjct: 201 V 201


>gi|16129610|ref|NP_416169.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89108494|ref|AP_002274.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. W3110]
 gi|170081315|ref|YP_001730635.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B]
 gi|238900868|ref|YP_002926664.1| ribonuclease T (RNase T) [Escherichia coli BW2952]
 gi|300951237|ref|ZP_07165090.1| ribonuclease T [Escherichia coli MS 116-1]
 gi|300958527|ref|ZP_07170660.1| ribonuclease T [Escherichia coli MS 175-1]
 gi|301027673|ref|ZP_07190989.1| ribonuclease T [Escherichia coli MS 196-1]
 gi|301647832|ref|ZP_07247616.1| ribonuclease T [Escherichia coli MS 146-1]
 gi|307138309|ref|ZP_07497665.1| ribonuclease T [Escherichia coli H736]
 gi|331642247|ref|ZP_08343382.1| ribonuclease T [Escherichia coli H736]
 gi|266952|sp|P30014|RNT_ECOLI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|147688|gb|AAC37008.1| RNaseT [Escherichia coli]
 gi|1787941|gb|AAC74724.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675063|dbj|BAA15418.2| ribonuclease T (RNase T) [Escherichia coli str. K12 substr. W3110]
 gi|169889150|gb|ACB02857.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B]
 gi|238863473|gb|ACR65471.1| ribonuclease T (RNase T) [Escherichia coli BW2952]
 gi|260449223|gb|ACX39645.1| ribonuclease T [Escherichia coli DH1]
 gi|299879216|gb|EFI87427.1| ribonuclease T [Escherichia coli MS 196-1]
 gi|300314801|gb|EFJ64585.1| ribonuclease T [Escherichia coli MS 175-1]
 gi|300449493|gb|EFK13113.1| ribonuclease T [Escherichia coli MS 116-1]
 gi|301074022|gb|EFK88828.1| ribonuclease T [Escherichia coli MS 146-1]
 gi|309701879|emb|CBJ01191.1| ribonuclease T [Escherichia coli ETEC H10407]
 gi|315136293|dbj|BAJ43452.1| ribonuclease T [Escherichia coli DH1]
 gi|315618843|gb|EFU99426.1| ribonuclease T [Escherichia coli 3431]
 gi|323937257|gb|EGB33536.1| ribonuclease T [Escherichia coli E1520]
 gi|323940680|gb|EGB36871.1| ribonuclease T [Escherichia coli E482]
 gi|331039045|gb|EGI11265.1| ribonuclease T [Escherichia coli H736]
          Length = 215

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +   IF                 +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|119026003|ref|YP_909848.1| putative DNA polymerase III epsilon subunit [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765587|dbj|BAF39766.1| putative DNA polymerase III epsilon subunit [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 207

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 11/176 (6%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            N     V D ETTGL   K DR IEIG V +          +  +       S  A  +
Sbjct: 1   MNSQGYAVVDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLIH---VDRSVGASWV 57

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           H IT   L   P F  I  E  D    +   ++AHN  FD  F+ AE  R+    P+D S
Sbjct: 58  HHITARELLHAPDFEGIAHELRDLLAGR--VFVAHNVSFDSRFLLAEYSRMGASIPVDQS 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            ++ T+ ++R      R  L   C+ +GI  ++   H AL D+H  + +  +++  
Sbjct: 116 TMLCTMKLSRSLI--GRGKLADCCEYFGI--ANEDAHSALSDAHATAILLGRLLEA 167


>gi|26991449|ref|NP_746874.1| DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440]
 gi|24986524|gb|AAN70338.1|AE016675_8 exonuclease [Pseudomonas putida KT2440]
          Length = 203

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 10/194 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  E+  V +L+  +    +Q  +   G         L GIT
Sbjct: 3   RIAVIDFETTGISPGTGCRATEVAVV-MLEGGRIVERYQSLMN-AGVPVPAFVAGLTGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+  P    + +E  +F        +AHNA FD  F + EL RI +    P     +
Sbjct: 61  TAMLRSAPPVEKVMNEVAEFVG--GTPLLAHNAAFDQKFWDYELGRIGRSRSQPFA--CS 116

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           L ++RR  P +  + L +L +  G+     + H A+ D+ + +++   +  G  + + G 
Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLP-DTGTAHRAMADAEMAANLLQYL-AGVLRQDHGV 174

Query: 186 KTNEDRFFKEEKKT 199
           +          +KT
Sbjct: 175 QQLSHELLCRLQKT 188


>gi|229844583|ref|ZP_04464723.1| ribonuclease T [Haemophilus influenzae 6P18H1]
 gi|229812832|gb|EEP48521.1| ribonuclease T [Haemophilus influenzae 6P18H1]
 gi|301169030|emb|CBW28627.1| ribonuclease T (RNase T) [Haemophilus influenzae 10810]
          Length = 229

 Score =  135 bits (340), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +          + Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVM 133

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R    ++P  P  + DT S+A       +  L   C    I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMMVGGSQIN 182
             + ++  M+     + 
Sbjct: 192 RTAKLFCYMVNHLKDLG 208


>gi|32266846|ref|NP_860878.1| DNA polymerase III subunit epsilon [Helicobacter hepaticus ATCC
           51449]
 gi|32262898|gb|AAP77944.1| DNA polymerase III [Helicobacter hepaticus ATCC 51449]
          Length = 266

 Score =  135 bits (340), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 8/169 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
              K   +  DIET G   +  +IIEIGA+++      ++ F+ ++  +  +      +L
Sbjct: 67  EWQKGNLVFVDIETNGAKPQQCQIIEIGALKVKGGEIIDK-FESYVYAD--EVPENITQL 123

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI    +   PS   +  EF  F       ++AHN  FD GF++  L++     L  + 
Sbjct: 124 TGICQADIAYAPSIKEVLGEFRAFLGTD--VFVAHNVNFDYGFVDYHLRQCGLFGLL-NP 180

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            + T+ +A++   S R  L  L +  GI  +    H A  D+     V+
Sbjct: 181 KLCTIELAKKTILSPRYALGFLNEFLGIRTA--VTHRAYADALTSFRVF 227


>gi|319946618|ref|ZP_08020852.1| DNA polymerase III, epsilon subunit [Streptococcus australis ATCC
           700641]
 gi|319746666|gb|EFV98925.1| DNA polymerase III, epsilon subunit [Streptococcus australis ATCC
           700641]
          Length = 819

 Score =  135 bits (340), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 86/175 (49%), Gaps = 10/175 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    K +  V D+E T   + ++  I    + ++   +   T++  + P+  +      
Sbjct: 1   MTTNVKRKYAVVDLEAT--SASSNAKIIQIGIVIIQDGQIVETYETDVNPH-EELDEHIR 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L GIT++ LK  P FS +  + ++    ++A ++AHN KFD   +   L     + + P
Sbjct: 58  QLTGITNQQLKKAPDFSQVARQVYELI--EDAVFVAHNVKFDANLLAESLFWEGFELITP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              IDT+ +A+   P+  R +L+SLC+   I + H   H A+ D+   + +++K+
Sbjct: 116 --RIDTVELAQVFFPTLERYNLSSLCEELAIPLDH--AHSAISDAQATAQLFLKL 166


>gi|306822551|ref|ZP_07455929.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309801474|ref|ZP_07695601.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554096|gb|EFM42005.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308221989|gb|EFO78274.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 328

 Score =  134 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 93/213 (43%), Gaps = 13/213 (6%)

Query: 5   NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N     V D ETTGL+  + DR IEIG V +          +  +  + R     A  +H
Sbjct: 13  NSKGYAVVDFETTGLNPARGDRAIEIGLVHVAPDGTLEDEHETLIRVH-RDI--GAQWIH 69

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSR 122
            I+   L   P F  I  E  D    +   ++AHN  FD  F+ +E +R+  D P++   
Sbjct: 70  HISAVELIHAPEFEGIARELRDLLAGR--VFVAHNVAFDSKFLLSEYRRLGADIPVNSHT 127

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++ T+ ++R         L   C+ +GI       H AL D+H  + +  ++M    + +
Sbjct: 128 MLCTMKLSRSLIGVG--SLADCCREFGIDNED--AHSALSDAHATALLLGRLMDADPKWS 183

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            G++   D   +E  +  P +  L+R + L  R
Sbjct: 184 -GWRRRLD-AAEEAGEHWPELKSLERREWLPRR 214


>gi|212702995|ref|ZP_03311123.1| hypothetical protein DESPIG_01033 [Desulfovibrio piger ATCC 29098]
 gi|212673583|gb|EEB34066.1| hypothetical protein DESPIG_01033 [Desulfovibrio piger ATCC 29098]
          Length = 173

 Score =  134 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 10/171 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D ET+G  + +   + +     ++      +F   + P   +       +HG+T 
Sbjct: 5   RYVALDFETSGYAAHSACAVGLC---RIEDGAVTDSFYSLIRPPSSRVL--FTHVHGLTW 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             LKD P+F+ ++ +   F     A   AHNA FD   ++A  Q +          + TL
Sbjct: 60  PLLKDAPTFTEVWPQLAAFMEGSRAIL-AHNAGFDRRVLHASCQALGLVQ-PQLPFLCTL 117

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             ARR  P +   L+S+C  +GI + H   H A  D+   +++Y+++   G
Sbjct: 118 KGARRSLPLASRALDSVCDYFGIPLDH---HHAGSDARACAEIYLRLHALG 165


>gi|145636543|ref|ZP_01792211.1| ribonuclease T [Haemophilus influenzae PittHH]
 gi|145270368|gb|EDK10303.1| ribonuclease T [Haemophilus influenzae PittHH]
          Length = 229

 Score =  134 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +          + Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMIRRGQKDADCQRSIIVAHNAAFDQSFVM 133

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R    ++P  P  + DT S+A       +  L   C    I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMMVGGSQIN 182
             + ++  M+     + 
Sbjct: 192 RTAKLFCYMVNHLKDLG 208


>gi|311740325|ref|ZP_07714155.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311304608|gb|EFQ80681.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 229

 Score =  134 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 7/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTG + + DRIIE+      +  +    +   + P+G++   +   +HGIT+ 
Sbjct: 31  FAVIDTETTGFNKRYDRIIELAVARFDESFRLVDQWHTLINPDGKQI--KNSHIHGITNA 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127
            +   P+F  +++EF    +      +AHNA FD   I AE +RI  D  D     +DT+
Sbjct: 89  DVAHAPTFPEVYTEFAARVD--GMVLMAHNAPFDSKMILAEAERITPDGEDVYFPFVDTI 146

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++A++        L++L    G+       H A+ D+     +  K+
Sbjct: 147 ALAKQMVSLRSYKLSALLDHVGLHNP--QSHAAIADATATGQMLNKL 191


>gi|254282911|ref|ZP_04957879.1| ribonuclease T [gamma proteobacterium NOR51-B]
 gi|219679114|gb|EED35463.1| ribonuclease T [gamma proteobacterium NOR51-B]
          Length = 214

 Score =  134 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 22/201 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVF---LCP-NGRKNSP 57
           R      +V D+ET G ++  D ++EI A +  ++        Q     + P  G    P
Sbjct: 12  RFRGFLPVVIDVETGGFNADTDAVLEIAATLVGMNDDGILTPKQTLCHNVEPFEGANLEP 71

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
            AL+  GI  E      + +  +F  IFS       EQ       + HNA FD GFINA 
Sbjct: 72  SALEFTGIDPESPLRDAVPEAIAFGEIFSAIRKEIREQGCNRAILVGHNAHFDAGFINAA 131

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             R  I ++P  P    DT ++A   +   +  L   C+  GI   +   H A  D+   
Sbjct: 132 SMRADIKRNPFHPFSHFDTATLAGLAY--GQTVLAKACRTAGIDFDNNEAHSAAYDAAKT 189

Query: 168 SDVYIKMM-----VGGSQINF 183
           ++++  ++     +GG Q + 
Sbjct: 190 AELFCNIVNRWQALGGWQPDL 210


>gi|254509159|ref|ZP_05121258.1| ribonuclease T [Vibrio parahaemolyticus 16]
 gi|219547910|gb|EED24936.1| ribonuclease T [Vibrio parahaemolyticus 16]
          Length = 213

 Score =  134 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 21/201 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NG 52
           +  K + R    +V D+ET G ++K D ++EI AV L        +   T    + P  G
Sbjct: 2   LTLKKRFRGYFPVVIDVETAGFNAKTDALLEICAVTLKMDDSGDLQPASTIHFHVEPFEG 61

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103
                EAL   G+ D F  L+     S    E +    ++        A  +AHNA+FD 
Sbjct: 62  ANIEKEALDFIGLRDPFSPLRGAIPESEALKEIYKLVRKEQKAADCSRAIIVAHNAQFDH 121

Query: 104 GFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+     R  + + P  P    DT +++   +   +  L   CK  G+   ++  H AL
Sbjct: 122 SFVMEASDRSKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMEFDNKEAHSAL 179

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   ++++  ++     + 
Sbjct: 180 YDTKKTAELFCGIVNKWKALG 200


>gi|297584389|ref|YP_003700169.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           selenitireducens MLS10]
 gi|297142846|gb|ADH99603.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           selenitireducens MLS10]
          Length = 935

 Score =  134 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 9/169 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++ D+ETTG+   K DRII+I A ++L+  +  + F  ++  + +        L GI+
Sbjct: 3   RYVILDLETTGVAYDKGDRIIQI-AYQVLEDQEVLKRFSTYINYD-KPVPAFIQSLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E LK+ P F  +  E     + + A ++AHN +FD+ F+N  L+           +IDT
Sbjct: 61  GEHLKNAPLFEEVAPEILS--DLEEAYFVAHNVEFDLKFLNESLEDAGYASF-QGPVIDT 117

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +AR   PS     L+ L K   +  +H + H A  D      ++ ++
Sbjct: 118 VELARICLPSEDSYRLSDLAKT--VQATHTAPHQADSDVEATRALFNEL 164


>gi|215486829|ref|YP_002329260.1| ribonuclease T [Escherichia coli O127:H6 str. E2348/69]
 gi|312966583|ref|ZP_07780803.1| ribonuclease T [Escherichia coli 2362-75]
 gi|331647141|ref|ZP_08348235.1| ribonuclease T [Escherichia coli M605]
 gi|331657625|ref|ZP_08358587.1| ribonuclease T [Escherichia coli TA206]
 gi|215264901|emb|CAS09287.1| ribonuclease T (RNase T) [Escherichia coli O127:H6 str. E2348/69]
 gi|281178725|dbj|BAI55055.1| ribonuclease T [Escherichia coli SE15]
 gi|312288693|gb|EFR16593.1| ribonuclease T [Escherichia coli 2362-75]
 gi|315299705|gb|EFU58947.1| ribonuclease T [Escherichia coli MS 16-3]
 gi|330911459|gb|EGH39969.1| ribonuclease T [Escherichia coli AA86]
 gi|331043924|gb|EGI16060.1| ribonuclease T [Escherichia coli M605]
 gi|331055873|gb|EGI27882.1| ribonuclease T [Escherichia coli TA206]
          Length = 215

 Score =  134 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +   IF                 +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|15802066|ref|NP_288088.1| ribonuclease T [Escherichia coli O157:H7 EDL933]
 gi|15831615|ref|NP_310388.1| ribonuclease T [Escherichia coli O157:H7 str. Sakai]
 gi|24113043|ref|NP_707553.1| ribonuclease T [Shigella flexneri 2a str. 301]
 gi|26247900|ref|NP_753940.1| ribonuclease T [Escherichia coli CFT073]
 gi|30063168|ref|NP_837339.1| ribonuclease T [Shigella flexneri 2a str. 2457T]
 gi|74312020|ref|YP_310439.1| ribonuclease T [Shigella sonnei Ss046]
 gi|82777129|ref|YP_403478.1| ribonuclease T [Shigella dysenteriae Sd197]
 gi|91210866|ref|YP_540852.1| ribonuclease T [Escherichia coli UTI89]
 gi|110641774|ref|YP_669504.1| ribonuclease T [Escherichia coli 536]
 gi|117623836|ref|YP_852749.1| ribonuclease T [Escherichia coli APEC O1]
 gi|157159164|ref|YP_001462944.1| ribonuclease T [Escherichia coli E24377A]
 gi|157161115|ref|YP_001458433.1| ribonuclease T [Escherichia coli HS]
 gi|168752335|ref|ZP_02777357.1| ribonuclease T [Escherichia coli O157:H7 str. EC4113]
 gi|168759015|ref|ZP_02784022.1| ribonuclease T [Escherichia coli O157:H7 str. EC4401]
 gi|168765301|ref|ZP_02790308.1| ribonuclease T [Escherichia coli O157:H7 str. EC4501]
 gi|168771196|ref|ZP_02796203.1| ribonuclease T [Escherichia coli O157:H7 str. EC4486]
 gi|168775884|ref|ZP_02800891.1| ribonuclease T [Escherichia coli O157:H7 str. EC4196]
 gi|168783923|ref|ZP_02808930.1| ribonuclease T [Escherichia coli O157:H7 str. EC4076]
 gi|168789491|ref|ZP_02814498.1| ribonuclease T [Escherichia coli O157:H7 str. EC869]
 gi|168802776|ref|ZP_02827783.1| ribonuclease T [Escherichia coli O157:H7 str. EC508]
 gi|170019996|ref|YP_001724950.1| ribonuclease T [Escherichia coli ATCC 8739]
 gi|170681755|ref|YP_001743601.1| ribonuclease T [Escherichia coli SMS-3-5]
 gi|187731741|ref|YP_001880408.1| ribonuclease T [Shigella boydii CDC 3083-94]
 gi|188496363|ref|ZP_03003633.1| ribonuclease T [Escherichia coli 53638]
 gi|191165895|ref|ZP_03027732.1| ribonuclease T [Escherichia coli B7A]
 gi|191173445|ref|ZP_03034973.1| ribonuclease T [Escherichia coli F11]
 gi|193064949|ref|ZP_03046025.1| ribonuclease T [Escherichia coli E22]
 gi|193070264|ref|ZP_03051208.1| ribonuclease T [Escherichia coli E110019]
 gi|194426088|ref|ZP_03058644.1| ribonuclease T [Escherichia coli B171]
 gi|194436646|ref|ZP_03068747.1| ribonuclease T [Escherichia coli 101-1]
 gi|195940215|ref|ZP_03085597.1| ribonuclease T [Escherichia coli O157:H7 str. EC4024]
 gi|208810464|ref|ZP_03252340.1| ribonuclease T [Escherichia coli O157:H7 str. EC4206]
 gi|208816877|ref|ZP_03257997.1| ribonuclease T [Escherichia coli O157:H7 str. EC4045]
 gi|208820253|ref|ZP_03260573.1| ribonuclease T [Escherichia coli O157:H7 str. EC4042]
 gi|209396384|ref|YP_002270721.1| ribonuclease T [Escherichia coli O157:H7 str. EC4115]
 gi|209918966|ref|YP_002293050.1| ribonuclease T [Escherichia coli SE11]
 gi|217328725|ref|ZP_03444806.1| ribonuclease T [Escherichia coli O157:H7 str. TW14588]
 gi|218554220|ref|YP_002387133.1| ribonuclease T [Escherichia coli IAI1]
 gi|218558523|ref|YP_002391436.1| ribonuclease T [Escherichia coli S88]
 gi|218689598|ref|YP_002397810.1| ribonuclease T [Escherichia coli ED1a]
 gi|218695215|ref|YP_002402882.1| ribonuclease T [Escherichia coli 55989]
 gi|218699780|ref|YP_002407409.1| ribonuclease T [Escherichia coli IAI39]
 gi|218705152|ref|YP_002412671.1| ribonuclease T [Escherichia coli UMN026]
 gi|227885930|ref|ZP_04003735.1| exoribonuclease T [Escherichia coli 83972]
 gi|237705597|ref|ZP_04536078.1| ribonuclease T [Escherichia sp. 3_2_53FAA]
 gi|253773389|ref|YP_003036220.1| ribonuclease T [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161714|ref|YP_003044822.1| ribonuclease T [Escherichia coli B str. REL606]
 gi|254793269|ref|YP_003078106.1| ribonuclease T [Escherichia coli O157:H7 str. TW14359]
 gi|256018153|ref|ZP_05432018.1| ribonuclease T [Shigella sp. D9]
 gi|260843958|ref|YP_003221736.1| ribonuclease T [Escherichia coli O103:H2 str. 12009]
 gi|260855477|ref|YP_003229368.1| ribonuclease T [Escherichia coli O26:H11 str. 11368]
 gi|260868144|ref|YP_003234546.1| ribonuclease T [Escherichia coli O111:H- str. 11128]
 gi|261227902|ref|ZP_05942183.1| ribonuclease T (RNase T) [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258364|ref|ZP_05950897.1| ribonuclease T [Escherichia coli O157:H7 str. FRIK966]
 gi|291282784|ref|YP_003499602.1| Ribonuclease T [Escherichia coli O55:H7 str. CB9615]
 gi|293405152|ref|ZP_06649144.1| ribonuclease T [Escherichia coli FVEC1412]
 gi|293409965|ref|ZP_06653541.1| ribonuclease T [Escherichia coli B354]
 gi|293414968|ref|ZP_06657611.1| ribonuclease T [Escherichia coli B185]
 gi|293446028|ref|ZP_06662450.1| ribonuclease T [Escherichia coli B088]
 gi|297520520|ref|ZP_06938906.1| ribonuclease T [Escherichia coli OP50]
 gi|298380798|ref|ZP_06990397.1| ribonuclease T [Escherichia coli FVEC1302]
 gi|300819590|ref|ZP_07099783.1| ribonuclease T [Escherichia coli MS 107-1]
 gi|300821475|ref|ZP_07101622.1| ribonuclease T [Escherichia coli MS 119-7]
 gi|300901538|ref|ZP_07119609.1| ribonuclease T [Escherichia coli MS 198-1]
 gi|300924684|ref|ZP_07140632.1| ribonuclease T [Escherichia coli MS 182-1]
 gi|300930881|ref|ZP_07146250.1| ribonuclease T [Escherichia coli MS 187-1]
 gi|300939029|ref|ZP_07153724.1| ribonuclease T [Escherichia coli MS 21-1]
 gi|300987874|ref|ZP_07178425.1| ribonuclease T [Escherichia coli MS 200-1]
 gi|300995389|ref|ZP_07181069.1| ribonuclease T [Escherichia coli MS 45-1]
 gi|301026836|ref|ZP_07190236.1| ribonuclease T [Escherichia coli MS 69-1]
 gi|301051019|ref|ZP_07197863.1| ribonuclease T [Escherichia coli MS 185-1]
 gi|301326587|ref|ZP_07219926.1| ribonuclease T [Escherichia coli MS 78-1]
 gi|306813383|ref|ZP_07447573.1| ribonuclease T [Escherichia coli NC101]
 gi|307310775|ref|ZP_07590421.1| ribonuclease T [Escherichia coli W]
 gi|309788378|ref|ZP_07682982.1| ribonuclease T [Shigella dysenteriae 1617]
 gi|309793418|ref|ZP_07687845.1| ribonuclease T [Escherichia coli MS 145-7]
 gi|312969674|ref|ZP_07783857.1| ribonuclease T [Escherichia coli 1827-70]
 gi|331653048|ref|ZP_08354053.1| ribonuclease T [Escherichia coli M718]
 gi|331663127|ref|ZP_08364037.1| ribonuclease T [Escherichia coli TA143]
 gi|331668331|ref|ZP_08369179.1| ribonuclease T [Escherichia coli TA271]
 gi|332279200|ref|ZP_08391613.1| ribonuclease T [Shigella sp. D9]
 gi|54039257|sp|P66682|RNT_ECO57 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|54039258|sp|P66683|RNT_SHIFL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|54042001|sp|P66681|RNT_ECOL6 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|122423656|sp|Q1RBE3|RNT_ECOUT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|123148046|sp|Q0THH6|RNT_ECOL5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|123562458|sp|Q32FB8|RNT_SHIDS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|123617229|sp|Q3Z208|RNT_SHISS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|166228563|sp|A1ABJ5|RNT_ECOK1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|166991088|sp|A7ZMB5|RNT_ECO24 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|166991089|sp|A8A0J6|RNT_ECOHS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|12515647|gb|AAG56641.1|AE005388_6 RNase T, degrades tRNA [Escherichia coli O157:H7 str. EDL933]
 gi|26108303|gb|AAN80505.1|AE016761_80 Ribonuclease T [Escherichia coli CFT073]
 gi|13361828|dbj|BAB35784.1| RNase T [Escherichia coli O157:H7 str. Sakai]
 gi|24052011|gb|AAN43260.1| RNase T [Shigella flexneri 2a str. 301]
 gi|30041420|gb|AAP17148.1| RNase T [Shigella flexneri 2a str. 2457T]
 gi|73855497|gb|AAZ88204.1| RNase T [Shigella sonnei Ss046]
 gi|81241277|gb|ABB61987.1| RNase T [Shigella dysenteriae Sd197]
 gi|91072440|gb|ABE07321.1| RNase T, degrades tRNA [Escherichia coli UTI89]
 gi|110343366|gb|ABG69603.1| ribonuclease T [Escherichia coli 536]
 gi|115512960|gb|ABJ01035.1| RNase T [Escherichia coli APEC O1]
 gi|157066795|gb|ABV06050.1| ribonuclease T [Escherichia coli HS]
 gi|157081194|gb|ABV20902.1| ribonuclease T [Escherichia coli E24377A]
 gi|169754924|gb|ACA77623.1| ribonuclease T [Escherichia coli ATCC 8739]
 gi|170519473|gb|ACB17651.1| ribonuclease T [Escherichia coli SMS-3-5]
 gi|187428733|gb|ACD08007.1| ribonuclease T [Shigella boydii CDC 3083-94]
 gi|187768648|gb|EDU32492.1| ribonuclease T [Escherichia coli O157:H7 str. EC4196]
 gi|188013802|gb|EDU51924.1| ribonuclease T [Escherichia coli O157:H7 str. EC4113]
 gi|188491562|gb|EDU66665.1| ribonuclease T [Escherichia coli 53638]
 gi|188998818|gb|EDU67804.1| ribonuclease T [Escherichia coli O157:H7 str. EC4076]
 gi|189354299|gb|EDU72718.1| ribonuclease T [Escherichia coli O157:H7 str. EC4401]
 gi|189360025|gb|EDU78444.1| ribonuclease T [Escherichia coli O157:H7 str. EC4486]
 gi|189364907|gb|EDU83323.1| ribonuclease T [Escherichia coli O157:H7 str. EC4501]
 gi|189370964|gb|EDU89380.1| ribonuclease T [Escherichia coli O157:H7 str. EC869]
 gi|189375329|gb|EDU93745.1| ribonuclease T [Escherichia coli O157:H7 str. EC508]
 gi|190904026|gb|EDV63738.1| ribonuclease T [Escherichia coli B7A]
 gi|190906287|gb|EDV65898.1| ribonuclease T [Escherichia coli F11]
 gi|192927436|gb|EDV82054.1| ribonuclease T [Escherichia coli E22]
 gi|192956445|gb|EDV86904.1| ribonuclease T [Escherichia coli E110019]
 gi|194416143|gb|EDX32409.1| ribonuclease T [Escherichia coli B171]
 gi|194424678|gb|EDX40664.1| ribonuclease T [Escherichia coli 101-1]
 gi|208724980|gb|EDZ74687.1| ribonuclease T [Escherichia coli O157:H7 str. EC4206]
 gi|208731220|gb|EDZ79909.1| ribonuclease T [Escherichia coli O157:H7 str. EC4045]
 gi|208740376|gb|EDZ88058.1| ribonuclease T [Escherichia coli O157:H7 str. EC4042]
 gi|209157784|gb|ACI35217.1| ribonuclease T [Escherichia coli O157:H7 str. EC4115]
 gi|209769438|gb|ACI83031.1| RNase T [Escherichia coli]
 gi|209769440|gb|ACI83032.1| RNase T [Escherichia coli]
 gi|209769442|gb|ACI83033.1| RNase T [Escherichia coli]
 gi|209769444|gb|ACI83034.1| RNase T [Escherichia coli]
 gi|209769446|gb|ACI83035.1| RNase T [Escherichia coli]
 gi|209912225|dbj|BAG77299.1| ribonuclease T [Escherichia coli SE11]
 gi|217318072|gb|EEC26499.1| ribonuclease T [Escherichia coli O157:H7 str. TW14588]
 gi|218351947|emb|CAU97679.1| ribonuclease T (RNase T) [Escherichia coli 55989]
 gi|218360988|emb|CAQ98561.1| ribonuclease T (RNase T) [Escherichia coli IAI1]
 gi|218365292|emb|CAR03013.1| ribonuclease T (RNase T) [Escherichia coli S88]
 gi|218369766|emb|CAR17537.1| ribonuclease T (RNase T) [Escherichia coli IAI39]
 gi|218427162|emb|CAR08045.2| ribonuclease T (RNase T) [Escherichia coli ED1a]
 gi|218432249|emb|CAR13139.1| ribonuclease T (RNase T) [Escherichia coli UMN026]
 gi|222033411|emb|CAP76152.1| ribonuclease T [Escherichia coli LF82]
 gi|226900354|gb|EEH86613.1| ribonuclease T [Escherichia sp. 3_2_53FAA]
 gi|227837109|gb|EEJ47575.1| exoribonuclease T [Escherichia coli 83972]
 gi|242377382|emb|CAQ32129.1| RNase T [Escherichia coli BL21(DE3)]
 gi|253324433|gb|ACT29035.1| ribonuclease T [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973615|gb|ACT39286.1| ribonuclease T [Escherichia coli B str. REL606]
 gi|253977810|gb|ACT43480.1| ribonuclease T [Escherichia coli BL21(DE3)]
 gi|254592669|gb|ACT72030.1| ribonuclease T (RNase T) [Escherichia coli O157:H7 str. TW14359]
 gi|257754126|dbj|BAI25628.1| ribonuclease T [Escherichia coli O26:H11 str. 11368]
 gi|257759105|dbj|BAI30602.1| ribonuclease T [Escherichia coli O103:H2 str. 12009]
 gi|257764500|dbj|BAI35995.1| ribonuclease T [Escherichia coli O111:H- str. 11128]
 gi|281601087|gb|ADA74071.1| Ribonuclease T [Shigella flexneri 2002017]
 gi|284921576|emb|CBG34648.1| ribonuclease T [Escherichia coli 042]
 gi|290762657|gb|ADD56618.1| Ribonuclease T [Escherichia coli O55:H7 str. CB9615]
 gi|291322858|gb|EFE62286.1| ribonuclease T [Escherichia coli B088]
 gi|291427360|gb|EFF00387.1| ribonuclease T [Escherichia coli FVEC1412]
 gi|291432616|gb|EFF05595.1| ribonuclease T [Escherichia coli B185]
 gi|291470433|gb|EFF12917.1| ribonuclease T [Escherichia coli B354]
 gi|294491548|gb|ADE90304.1| ribonuclease T [Escherichia coli IHE3034]
 gi|298278240|gb|EFI19754.1| ribonuclease T [Escherichia coli FVEC1302]
 gi|300297314|gb|EFJ53699.1| ribonuclease T [Escherichia coli MS 185-1]
 gi|300306022|gb|EFJ60542.1| ribonuclease T [Escherichia coli MS 200-1]
 gi|300355068|gb|EFJ70938.1| ribonuclease T [Escherichia coli MS 198-1]
 gi|300395276|gb|EFJ78814.1| ribonuclease T [Escherichia coli MS 69-1]
 gi|300406150|gb|EFJ89688.1| ribonuclease T [Escherichia coli MS 45-1]
 gi|300419111|gb|EFK02422.1| ribonuclease T [Escherichia coli MS 182-1]
 gi|300456057|gb|EFK19550.1| ribonuclease T [Escherichia coli MS 21-1]
 gi|300461297|gb|EFK24790.1| ribonuclease T [Escherichia coli MS 187-1]
 gi|300525978|gb|EFK47047.1| ribonuclease T [Escherichia coli MS 119-7]
 gi|300527838|gb|EFK48900.1| ribonuclease T [Escherichia coli MS 107-1]
 gi|300846749|gb|EFK74509.1| ribonuclease T [Escherichia coli MS 78-1]
 gi|305853128|gb|EFM53568.1| ribonuclease T [Escherichia coli NC101]
 gi|306908953|gb|EFN39449.1| ribonuclease T [Escherichia coli W]
 gi|307553675|gb|ADN46450.1| ribonuclease T [Escherichia coli ABU 83972]
 gi|307626861|gb|ADN71165.1| ribonuclease T [Escherichia coli UM146]
 gi|308123005|gb|EFO60267.1| ribonuclease T [Escherichia coli MS 145-7]
 gi|308923760|gb|EFP69263.1| ribonuclease T [Shigella dysenteriae 1617]
 gi|310337959|gb|EFQ03048.1| ribonuclease T [Escherichia coli 1827-70]
 gi|312946253|gb|ADR27080.1| ribonuclease T [Escherichia coli O83:H1 str. NRG 857C]
 gi|313648931|gb|EFS13368.1| ribonuclease T [Shigella flexneri 2a str. 2457T]
 gi|315060959|gb|ADT75286.1| ribonuclease T (RNase T) [Escherichia coli W]
 gi|315286357|gb|EFU45793.1| ribonuclease T [Escherichia coli MS 110-3]
 gi|320174139|gb|EFW49304.1| Ribonuclease T [Shigella dysenteriae CDC 74-1112]
 gi|320181325|gb|EFW56244.1| Ribonuclease T [Shigella boydii ATCC 9905]
 gi|320188340|gb|EFW63002.1| Ribonuclease T [Escherichia coli O157:H7 str. EC1212]
 gi|320195450|gb|EFW70075.1| Ribonuclease T [Escherichia coli WV_060327]
 gi|320197835|gb|EFW72443.1| Ribonuclease T [Escherichia coli EC4100B]
 gi|320642007|gb|EFX11371.1| ribonuclease T [Escherichia coli O157:H7 str. G5101]
 gi|320647324|gb|EFX16132.1| ribonuclease T [Escherichia coli O157:H- str. 493-89]
 gi|320652618|gb|EFX20887.1| ribonuclease T [Escherichia coli O157:H- str. H 2687]
 gi|320653004|gb|EFX21200.1| ribonuclease T [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320658687|gb|EFX26364.1| ribonuclease T [Escherichia coli O55:H7 str. USDA 5905]
 gi|323152841|gb|EFZ39111.1| ribonuclease T [Escherichia coli EPECa14]
 gi|323169213|gb|EFZ54889.1| ribonuclease T [Shigella sonnei 53G]
 gi|323169961|gb|EFZ55617.1| ribonuclease T [Escherichia coli LT-68]
 gi|323180968|gb|EFZ66506.1| ribonuclease T [Escherichia coli 1180]
 gi|323186075|gb|EFZ71431.1| ribonuclease T [Escherichia coli 1357]
 gi|323378470|gb|ADX50738.1| ribonuclease T [Escherichia coli KO11]
 gi|323948052|gb|EGB44044.1| ribonuclease T [Escherichia coli H120]
 gi|323952162|gb|EGB48035.1| ribonuclease T [Escherichia coli H252]
 gi|323956663|gb|EGB52400.1| ribonuclease T [Escherichia coli H263]
 gi|323962144|gb|EGB57739.1| ribonuclease T [Escherichia coli H489]
 gi|323968420|gb|EGB63826.1| ribonuclease T [Escherichia coli M863]
 gi|323973968|gb|EGB69140.1| ribonuclease T [Escherichia coli TA007]
 gi|323978209|gb|EGB73295.1| ribonuclease T [Escherichia coli TW10509]
 gi|324007017|gb|EGB76236.1| ribonuclease T [Escherichia coli MS 57-2]
 gi|324011423|gb|EGB80642.1| ribonuclease T [Escherichia coli MS 60-1]
 gi|324016541|gb|EGB85760.1| ribonuclease T [Escherichia coli MS 117-3]
 gi|324119138|gb|EGC13026.1| ribonuclease T [Escherichia coli E1167]
 gi|326342019|gb|EGD65800.1| Ribonuclease T [Escherichia coli O157:H7 str. 1044]
 gi|326343571|gb|EGD67333.1| Ribonuclease T [Escherichia coli O157:H7 str. 1125]
 gi|327252769|gb|EGE64423.1| ribonuclease T [Escherichia coli STEC_7v]
 gi|331049146|gb|EGI21218.1| ribonuclease T [Escherichia coli M718]
 gi|331058926|gb|EGI30903.1| ribonuclease T [Escherichia coli TA143]
 gi|331063525|gb|EGI35436.1| ribonuclease T [Escherichia coli TA271]
 gi|332101552|gb|EGJ04898.1| ribonuclease T [Shigella sp. D9]
 gi|332756966|gb|EGJ87309.1| ribonuclease T [Shigella flexneri 4343-70]
 gi|332758172|gb|EGJ88497.1| ribonuclease T [Shigella flexneri 2747-71]
 gi|332758486|gb|EGJ88807.1| ribonuclease T [Shigella flexneri K-671]
 gi|332767056|gb|EGJ97255.1| ribonuclease T [Shigella flexneri 2930-71]
 gi|333004001|gb|EGK23536.1| ribonuclease T [Shigella flexneri K-218]
 gi|333005308|gb|EGK24828.1| ribonuclease T [Shigella flexneri VA-6]
 gi|333005888|gb|EGK25404.1| ribonuclease T [Shigella flexneri K-272]
 gi|333017888|gb|EGK37193.1| ribonuclease T [Shigella flexneri K-304]
 gi|333018868|gb|EGK38161.1| ribonuclease T [Shigella flexneri K-227]
          Length = 215

 Score =  134 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +   IF                 +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|319955723|ref|YP_004166990.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM
           14237]
 gi|319424383|gb|ADV51492.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM
           14237]
          Length = 456

 Score =  134 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 9/157 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTG     + I EI A+   D  +    F   + P  ++  P  + L GIT++
Sbjct: 2   YAILDIETTGGKYNEEGITEI-AIHKFDGHQVVDQFISLVNPE-KEIQPFVVNLTGITNK 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  +     +    +    IAHNA+FD   +  E +R+  +     + I T+ 
Sbjct: 60  MLVTAPKFYEVAKRIVEI--TEGTVLIAHNAQFDYRILRTEFRRLGFNF--ERKTICTVE 115

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           +A++  P      L  L +  GI +S R  H A  D+
Sbjct: 116 LAQKLLPEAESYSLGKLVRSLGIPVSDR--HRANGDA 150


>gi|152968358|ref|YP_001364142.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans
           SRS30216]
 gi|151362875|gb|ABS05878.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans
           SRS30216]
          Length = 224

 Score =  134 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 17/219 (7%)

Query: 3   RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+ + R  V D+ETTGL  +  DR+++I    L       R++   + P+     P    
Sbjct: 20  RRYRHRYAVLDVETTGLRPETGDRVVQIAVTLLDARGTVERSWSSLVDPHR---DPGPTH 76

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT E L   P+F+ +        + +   ++AHNA+FD  F++AE++      L   
Sbjct: 77  VHGITAERLAGAPTFAQLAPTVAGLLDGR--VFVAHNARFDWKFVSAEMRAAGVH-LPVR 133

Query: 122 RIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           + + T  +A+R   P     L +L + +G+       H A  D+ +L +V  + ++  + 
Sbjct: 134 QRLCTWELAQRLDLPVENLKLATLAEHWGVR--QLRPHDAEDDTRVLVEVLREELLDAAG 191

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                            + V    L  R + L  RI + 
Sbjct: 192 QRLDLPIV-------VPREVRRPPLSARLRVLVERIAQS 223


>gi|302773125|ref|XP_002969980.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii]
 gi|300162491|gb|EFJ29104.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii]
          Length = 1208

 Score =  134 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 17/187 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   KM  IVFD+ETTG  +  DRIIE  A +L    +   T    + P GR        
Sbjct: 170 IPAPKMTIIVFDLETTGFRAAGDRIIEFAARDLAGGDR--STISALVNP-GRTVPYLITA 226

Query: 62  LHGITDEFL--KDKPSFSSIFSEFWDFF-----NEQNAEWIAHN-AKFDVGFINAELQRI 113
           + GIT++ +     PS+  +      F       ++    +AHN  +FDV F+  E Q  
Sbjct: 227 VTGITNQMVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSC 286

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLS 168
                +    +D++ +AR              L+ L + YG+  + R  H A+ D ++L+
Sbjct: 287 GIQVPEWWLFLDSMPLAREAKKKFGYNWRSLKLSVLHEAYGLHSTER-AHRAMADVNMLA 345

Query: 169 DVYIKMM 175
            V   ++
Sbjct: 346 SVLEAIV 352


>gi|302799380|ref|XP_002981449.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii]
 gi|300150989|gb|EFJ17637.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii]
          Length = 1254

 Score =  134 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 17/187 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   KM  IVFD+ETTG  +  DRIIE  A +L    +   T    + P GR        
Sbjct: 170 IPAPKMTIIVFDLETTGFRAAGDRIIEFAARDLAGGDR--STISALVNP-GRTVPYLITA 226

Query: 62  LHGITDEFL--KDKPSFSSIFSEFWDFF-----NEQNAEWIAHN-AKFDVGFINAELQRI 113
           + GIT++ +     PS+  +      F       ++    +AHN  +FDV F+  E Q  
Sbjct: 227 VTGITNQMVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSC 286

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLS 168
                +    +D++ +AR              L+ L + YG+  + R  H A+ D ++L+
Sbjct: 287 GIQVPEWWLFLDSMPLARETKKKFGYNWRSLKLSVLHEAYGLHSTER-AHRAMADVNMLA 345

Query: 169 DVYIKMM 175
            V   ++
Sbjct: 346 SVLEAIV 352


>gi|158316676|ref|YP_001509184.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec]
 gi|158112081|gb|ABW14278.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec]
          Length = 389

 Score =  134 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 80/212 (37%), Gaps = 10/212 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +    V D+ETTGL    DR++ +  V           +   L P      P  + +HG+
Sbjct: 74  RRPYAVVDVETTGLSPTRDRVLSVAVVLTAADGTVEHRWSTLLDPGC---DPGPVHIHGL 130

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + L   P+F+++  E       +    +AHNA FD   +  E  RI    +     + 
Sbjct: 131 TRQRLAGSPTFAAVADEVAGLLAGR--VLVAHNAAFDWRMLAGEAMRIG-TTIPVEWRLC 187

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           TL++A R      +  L SL   +G+    R  H A  D+ +L+ +  +++   +     
Sbjct: 188 TLTLASRLGLELPSLRLASLAAYWGVV--QRRAHDAQDDAEVLAALLPRILQRAADQYLE 245

Query: 185 FKTNEDRFFKEEKKTV-PNISLLKRDKPLFTR 215
                     +      P  +   R  P   R
Sbjct: 246 LPLTRCGVDHDGVTVRPPRFAAAGRTPPCRYR 277


>gi|325478691|gb|EGC81802.1| CRISPR-associated endoribonuclease Cas2 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 292

 Score =  134 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 5/168 (2%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +    + +V DIET+GLD +  +IIEIGAV      +    F+  +     K S E +KL
Sbjct: 119 KTQAKKYVVVDIETSGLDYEKHKIIEIGAVLTNSQGEVLDKFESLIRQEI-KLSNEIIKL 177

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GITD  L +      +  +F  F   +N   + +N  FD+ F+N  L++ +   +  + 
Sbjct: 178 TGITDNDLINGGDEKKVLEDFVCFI--KNHPLVGYNFNFDMKFLNYNLEKNSLKEITNTT 235

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                 + R K       L ++ K YGI    +  H AL D+ +  ++
Sbjct: 236 YDLKTYVKREKMFLKNYKLETVLKEYGIK--KKVDHRALADALVTVNL 281


>gi|88800698|ref|ZP_01116257.1| ribonuclease T [Reinekea sp. MED297]
 gi|88776562|gb|EAR07778.1| ribonuclease T [Reinekea sp. MED297]
          Length = 215

 Score =  134 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G ++K D ++EI AV L      + + +      + P  G      AL   
Sbjct: 10  PVVIDVETAGFNAKTDALLEIAAVTLKMTDDGWLEQDECLFFNVEPFEGANLEQAALDFT 69

Query: 64  GITDE-FLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI     L+          E +            + A  + HNA FD  F+ A  +R N 
Sbjct: 70  GIDPHNPLRGAVDEGDALKEIFKMIRKGMKAAGCKRAILVGHNANFDHNFLFAAAERANN 129

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++   +   +  L   C+  G+  S +  H A  D+   ++++  
Sbjct: 130 KRNPFHPFTTFDTAALSALVY--GQTVLKRACQASGVEFSDKEAHNAEYDTRKTAELFCN 187

Query: 174 MMVGGSQIN 182
           M+     + 
Sbjct: 188 MINQWKTLG 196


>gi|291617286|ref|YP_003520028.1| Rnt [Pantoea ananatis LMG 20103]
 gi|291152316|gb|ADD76900.1| Rnt [Pantoea ananatis LMG 20103]
 gi|327393738|dbj|BAK11160.1| ribonuclease T Rnt [Pantoea ananatis AJ13355]
          Length = 223

 Score =  134 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 86/213 (40%), Gaps = 22/213 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G +++ D ++E+ A+ L    +     ++T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAQTDALLEVAAITLKMDDEGWLHHDQTLHFHVEPFVGALLHP 72

Query: 58  EALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109
           EAL   GI     L+   S        +              A  +AHNA FD+ F+NA 
Sbjct: 73  EALAFTGIDPSNPLRGAVSEYEALHAIFKLVRKGIKDTGCNRAIMVAHNATFDLNFMNAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L   CK  G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFATFDTAALSGLVL--GQTVLAKACKAAGMEFDSSQAHSALYDTQQT 190

Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKE 195
           + ++ +++     +GG  +    +  E +   E
Sbjct: 191 ATLFCELVNRWKRLGGWPLALAEEATEYQGAAE 223


>gi|325297487|ref|YP_004257404.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
 gi|324317040|gb|ADY34931.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
          Length = 183

 Score =  134 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 9/166 (5%)

Query: 9   KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            I  D ET TG   K   I E G   + +   T +T    + P G + S   +++HGI  
Sbjct: 6   FIAIDFETATG---KRASICEAGICVVRNGEVT-KTRSWLVRPQGNRYSYWNMQIHGIRP 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
               D P F  +++E  ++  +     +AHNA FDVG I   L+    +  D      +L
Sbjct: 62  NDTVDSPEFPEVWAEISEYLKDIP-ILVAHNAAFDVGCIRHSLELYGMEKPDI-TYYCSL 119

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             AR+ +    N L+ LC ++ I       H A  D+ + + ++++
Sbjct: 120 RAARKLYDFGCNSLDYLCDQFKIPY--GRHHRAGDDAEMCARLFLR 163


>gi|283456242|ref|YP_003360806.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
 gi|283102876|gb|ADB09982.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
          Length = 317

 Score =  134 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 13/214 (6%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            N     V D ETTGL+  + DR IEIG V +          +  +  + R     A  +
Sbjct: 1   MNSKGYAVVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLIRVH-RDI--GAQWI 57

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
           H I+   L   P F  I  E  D    +   ++AHN  FD  F+ +E +R+  D P++  
Sbjct: 58  HHISAVELIHAPEFEGIARELRDLLAGR--VFVAHNVAFDSKFLLSEYRRLGTDIPVNSH 115

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            ++ T+ ++R         L   C+ +GI       H AL D+H  + +  ++M    + 
Sbjct: 116 TMLCTMKLSRSLIGVG--SLADCCREFGIDNED--AHSALSDAHATALLLGRLMDADPEW 171

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
           + G++   D   +E  +  P ++  +R + L  R
Sbjct: 172 S-GWRRRLD-AAEEAGEHWPELTSFERREWLPRR 203


>gi|261821926|ref|YP_003260032.1| ribonuclease T [Pectobacterium wasabiae WPP163]
 gi|261605939|gb|ACX88425.1| ribonuclease T [Pectobacterium wasabiae WPP163]
          Length = 223

 Score =  134 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 22/213 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++E+ AV    +   + + + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
            AL  +GI         + +  +   IF        +Q       +AHNA FD  F+ A 
Sbjct: 73  AALAFNGIDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAA 132

Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             R    ++P  P    DT +++       +  L   C   GI       H AL D++  
Sbjct: 133 ADRCSLKRNPFHPFATFDTAALSGLVL--GQTVLAKACITAGIAFDSSQAHSALYDTNQT 190

Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKE 195
           + ++ +++     +GG  +       ED   ++
Sbjct: 191 ALLFCELVNRWKRLGGWPLALEENAAEDASTED 223


>gi|157374989|ref|YP_001473589.1| ribonuclease T [Shewanella sediminis HAW-EB3]
 gi|157317363|gb|ABV36461.1| ribonuclease T [Shewanella sediminis HAW-EB3]
          Length = 223

 Score =  134 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA-VELLDYSKT---NRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +++ D ++EI   +  +D       ++T    + P  G    PEAL   
Sbjct: 19  PVVIDVETAGFNAQTDALLEIAVTMLKMDDEGVLGLDKTLHYHIEPFEGANLEPEALAFT 78

Query: 64  GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113
           GI         + +K +F  IF E               +AHNA FD GF++  ++R  +
Sbjct: 79  GIDPTNPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVSKAVERNGL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT ++A          L   C   GI   +   H AL D+   ++++  
Sbjct: 139 KRTPFHPFATFDTATLAGLAI--GHTVLAKACSIAGIPFDNNEAHSALYDTERTAELFCL 196

Query: 174 MMVGGSQIN 182
           ++     + 
Sbjct: 197 IVNRWKALG 205


>gi|332090790|gb|EGI95882.1| ribonuclease T [Shigella boydii 5216-82]
          Length = 215

 Score =  134 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +   IF                 +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFATFDTTALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|237731384|ref|ZP_04561865.1| ribonuclease T [Citrobacter sp. 30_2]
 gi|226906923|gb|EEH92841.1| ribonuclease T [Citrobacter sp. 30_2]
          Length = 215

 Score =  134 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        +        +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPNNPLRGAVSEYDALHAIFKMVRKGIKDSGCNRAIMVAHNATFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L+  C   G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLSL--GQTVLSKACLAAGMEFDGNQAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|304310986|ref|YP_003810584.1| hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1]
 gi|301796719|emb|CBL44931.1| Hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1]
          Length = 300

 Score =  134 bits (339), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ETTGL++ +  I EIGAV+     +    F++F  P G        +L GITDE 
Sbjct: 36  IAIDFETTGLEASSAAITEIGAVKFKISGEIVDQFEMFAYP-GTPIPVRIQELTGITDEM 94

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +        ++ +F D+ +  N  +IAHNA F+  F+ A  ++  + P      IDTL I
Sbjct: 95  VTGCEPPLFVWKKFLDWADGANT-FIAHNAPFEARFVRALYEKEGEMP--NIYFIDTLQI 151

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +R + P  S   L +L K           H AL D+   S +Y ++
Sbjct: 152 SRNRLPEESSYSLKNLVK-----FKEGEPHRALADAKACSTLYCRL 192


>gi|257785157|ref|YP_003180374.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
 gi|257473664|gb|ACV51783.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
          Length = 978

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 80/178 (44%), Gaps = 12/178 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGL  K   +IEI A +L       R FQ F+ P G     E   L  ITDE
Sbjct: 19  IVVLDTETTGLSFKKCSLIEISAAKLSGREIIER-FQTFVDP-GCPIPEEITTLTSITDE 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K  PS     +   +F        +AHNA FD  FI    +R+          IDTLS
Sbjct: 77  DVKGAPSAKEAVAALAEFVG--GLPVLAHNATFDRTFI----ERVPGGTSVSDTWIDTLS 130

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           ++R   P  S + L+S+ + +G   + +  H A  D   L  ++  +++G   +  G 
Sbjct: 131 LSRIALPRLSSHKLSSMAEAFG---TMKVTHRASDDVDALCGMWRILLLGLMNLPRGL 185


>gi|315446380|ref|YP_004079259.1| DNA polymerase III subunit epsilon [Mycobacterium sp. Spyr1]
 gi|315264683|gb|ADU01425.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. Spyr1]
          Length = 333

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 25/213 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RI+ + A+ L D     ++    L P      P    +HG+T E
Sbjct: 20  WAVVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPG---VDPGPTHVHGLTAE 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+ +P+F  +  +  +    +    +AHN  FD  F++AE + +  + L    ++ T+ 
Sbjct: 77  MLEGQPTFGDVVGDLCEVL--RGRTLVAHNVGFDYSFLSAEAELVGAE-LPIDTVMCTVE 133

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +G+  +    H AL D+ +L+ +   ++V           
Sbjct: 134 LARRLDLGLENLRLETLAAHWGV--TQMRPHDALDDAMVLAQILKPVLVRA--------- 182

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
                 +E +K +P   + +R  P   R+T +E
Sbjct: 183 ------QERRKWLPVHPVGRRTWP-NGRVTHDE 208


>gi|149912028|ref|ZP_01900621.1| ribonuclease T [Moritella sp. PE36]
 gi|149804889|gb|EDM64924.1| ribonuclease T [Moritella sp. PE36]
          Length = 231

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 22/203 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V DIET G +++ D ++EI A    ++   Y K + T    + P  G      AL   
Sbjct: 18  PVVIDIETAGFNAQTDAMLEIAASILEMDEDGYLKISHTLHFNVEPFEGANLEQAALDFT 77

Query: 64  GITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINA--ELQRI 113
           GI     L+         +E +              A  +AHNA FD  F++A    ++I
Sbjct: 78  GIDPTNPLRGAVPEREAITEIYKAVRKGLKDTGCHRAIMVAHNAAFDHAFLSAASNREKI 137

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A       +  L   C   GI   H+  H A  D+   ++++  
Sbjct: 138 KRNPFHPFATFDTTTLAGLA--VGQTVLAKACVAAGIPFDHKQAHSAKYDTEQTAELFCY 195

Query: 174 MM-----VGGSQINFGFKTNEDR 191
           ++     +GG  +    + ++D 
Sbjct: 196 IVNKWKDMGGWPLAVPEEEDDDA 218


>gi|315290558|gb|EFU49932.1| ribonuclease T [Escherichia coli MS 153-1]
          Length = 215

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +   IF                 +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPSDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|317489230|ref|ZP_07947747.1| exonuclease [Eggerthella sp. 1_3_56FAA]
 gi|325832235|ref|ZP_08165234.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1]
 gi|316911631|gb|EFV33223.1| exonuclease [Eggerthella sp. 1_3_56FAA]
 gi|325486071|gb|EGC88525.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1]
          Length = 998

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 11/173 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG    +D + +I A   ++  +    F  F+ P G+    +   L  I D  
Sbjct: 43  VVLDTETTGFSFNHDELTQIAAAR-MEQGEIVEWFITFVNP-GKPIPEDVAHLTDIHDSD 100

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P  +   ++  +F    +A+ +AHNA+FD  F        +  PL  +  ID+L +
Sbjct: 101 VADAPLPADALAKLVEFIG--DAKVVAHNAEFDRTFTTRH---PSGYPLLENTWIDSLDL 155

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           AR   P  + + L  L + +G  +S    H A  D      ++  ++ G + +
Sbjct: 156 ARIALPRMKSHRLLDLVRAFGAPLS---THRADADVEATCAIFRILLAGVAAM 205


>gi|68535768|ref|YP_250473.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411]
 gi|68263367|emb|CAI36855.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411]
          Length = 222

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 8/149 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTG + + DRIIEI AV    +     ++   L P+G+    +   +HGIT++
Sbjct: 21  FAVIDTETTGFNKRYDRIIEIAAVRADAHFNPVDSWHTLLNPDGKAI--KNSHIHGITND 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPSRII 124
            +   P+FS ++ +F  + +       AHNA FD   I AE+ R+    + +  +    I
Sbjct: 79  MVATAPTFSEVYGDFTSYID--GMHLFAHNAPFDSKMIVAEVDRMTGVDDGNEDEFFPFI 136

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITIS 153
           DT+ +A++       +L +L  R G+   
Sbjct: 137 DTIDLAKQMLDRGPYNLPALLDRLGLDNP 165


>gi|331683160|ref|ZP_08383761.1| ribonuclease T [Escherichia coli H299]
 gi|331079375|gb|EGI50572.1| ribonuclease T [Escherichia coli H299]
          Length = 215

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +   IF                 +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHNFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|332686697|ref|YP_004456471.1| DinG family ATP-dependent helicase YoaA [Melissococcus plutonius
           ATCC 35311]
 gi|332370706|dbj|BAK21662.1| DinG family ATP-dependent helicase YoaA [Melissococcus plutonius
           ATCC 35311]
          Length = 924

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 10/208 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG+D   DRII+ G V L++  +        + PN R    +   L GI++ 
Sbjct: 7   YAVVDLETTGVDPTVDRIIQFGCV-LIENGEIVSHIGTDVNPN-RIIPKQIQHLTGISNA 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  I    ++     +  ++AHN  FD  F++ EL R    PL     IDT+ 
Sbjct: 65  RVQKAPYFEDIAIMIFNLL--TDTIFVAHNVHFDYRFLSHELVRCGLPPLTIDA-IDTVE 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF----G 184
           +A+   P+ R+          + + H   H A  D+ + +++ + +      +       
Sbjct: 122 LAQIFLPTERSF-RLSDLSSSLGLLHNHPHQADSDAQVTAELLLIIEQKMYTLPLITMEK 180

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPL 212
                ++  ++  + +  I    ++ P+
Sbjct: 181 ISQLGEQLVRQTGEYIQAIYKKMKEHPV 208


>gi|254699857|ref|ZP_05161685.1| DNA polymerase III, epsilon chain [Brucella suis bv. 5 str. 513]
          Length = 224

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 9/218 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++    +    + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +  T+  ARR        L+    + G+  +   +HGAL D++L + +Y+        +
Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQGV 179

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                        +  K  P     +  +    R +  
Sbjct: 180 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRGSAA 217


>gi|238749424|ref|ZP_04610929.1| Ribonuclease T [Yersinia rohdei ATCC 43380]
 gi|238712079|gb|EEQ04292.1| Ribonuclease T [Yersinia rohdei ATCC 43380]
          Length = 226

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +++ D ++EI AV L      +   ++T    + P  G    PEAL  +
Sbjct: 30  PVVIDVETAGFNAQTDALLEIAAVTLRMDKDGWLLPDQTLHFHVEPFEGANLQPEALAFN 89

Query: 64  GITD-EFLKDKPS----FSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113
           GI     L+   S      +IF+       EQ       +AHNA FD  F+ A  +R  +
Sbjct: 90  GIDPTNPLRGAVSEYNALHAIFTAIRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASL 149

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C   GI       H AL D+   + ++ +
Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLTAGIPFDSSQAHSALYDTMQTATLFCE 207

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 208 LVNRWKKLG 216


>gi|225629116|ref|ZP_03787149.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella ceti str. Cudo]
 gi|237817070|ref|ZP_04596062.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
           abortus str. 2308 A]
 gi|225615612|gb|EEH12661.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella ceti str. Cudo]
 gi|237787883|gb|EEP62099.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
           abortus str. 2308 A]
          Length = 248

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 9/218 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++    +    + +SP+A  
Sbjct: 33  IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 90

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 91  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 148

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +  T+  ARR        L+    + G+  +   +HGAL D++L + +Y+        +
Sbjct: 149 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQGV 203

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                        +  K  P     +  +    R +  
Sbjct: 204 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 241


>gi|320668677|gb|EFX35482.1| ribonuclease T [Escherichia coli O157:H7 str. LSU-61]
          Length = 215

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDITLHFHVEPFVGANLQP 72

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +   IF                 +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|315182194|gb|ADT89107.1| DNA polymerase III, alpha subunit [Vibrio furnissii NCTC 11218]
          Length = 184

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSE 82
            DR IEIGAV+L+D  +   TFQ  + P G + S       GIT+  L+  P    + +E
Sbjct: 2   GDRAIEIGAVKLVDG-QVAGTFQQLMNP-GFRVSGFIEGYTGITNTMLRTAPRCEEVMAE 59

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR-NDL 141
           F  F    +   +AHNA FD  F++AE  RI      P +   ++ IARR   ++  + L
Sbjct: 60  FAHFIG--DTPLVAHNASFDKRFLDAEFDRIGVRY--PGQFACSMLIARRLIQNAPTHKL 115

Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             L +   I     + H AL DS + + +++ M+    +   
Sbjct: 116 GDLVRFKQIENDG-TFHRALADSQMTASLWMLMVNDLRERGV 156


>gi|283833269|ref|ZP_06353010.1| ribonuclease T [Citrobacter youngae ATCC 29220]
 gi|291070906|gb|EFE09015.1| ribonuclease T [Citrobacter youngae ATCC 29220]
          Length = 215

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        E        +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPNNPLRGAVSEYDALHAIFKMVRKGIKESGCNRAIMVAHNATFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L+  C   G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLSL--GQTVLSKACLAAGMEFDGNQAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|256059183|ref|ZP_05449390.1| DNA polymerase III, epsilon chain [Brucella neotomae 5K33]
          Length = 224

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 9/218 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++    +    + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
               T+  ARR        L+    + G+  +   +HGAL D++L + +Y+        +
Sbjct: 125 PFYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQGV 179

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                        +  K  P     +  +    R +  
Sbjct: 180 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 217


>gi|82543982|ref|YP_407929.1| ribonuclease T [Shigella boydii Sb227]
 gi|194434706|ref|ZP_03066959.1| ribonuclease T [Shigella dysenteriae 1012]
 gi|123559690|sp|Q321A7|RNT_SHIBS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|81245393|gb|ABB66101.1| RNase T [Shigella boydii Sb227]
 gi|194417044|gb|EDX33160.1| ribonuclease T [Shigella dysenteriae 1012]
 gi|320186326|gb|EFW61062.1| Ribonuclease T [Shigella flexneri CDC 796-83]
 gi|332093985|gb|EGI99038.1| ribonuclease T [Shigella dysenteriae 155-74]
 gi|332096070|gb|EGJ01075.1| ribonuclease T [Shigella boydii 3594-74]
          Length = 215

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +   IF                 +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMIAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|219847899|ref|YP_002462332.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM
           9485]
 gi|219542158|gb|ACL23896.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM
           9485]
          Length = 280

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 12/189 (6%)

Query: 6   KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  + FD+ETTGLD +N  RI E+  +       T +     + P  R+  P+A +++G
Sbjct: 12  DLPLVFFDVETTGLDLQNGHRICELAMLRREHRQITGQ-INTLINPE-RELDPQASQVNG 69

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I  E L+  P F+ +  +       Q A  +AHN  FD  F+N EL R    PL     +
Sbjct: 70  IRAEDLQSAPRFAELTVQVVQL--SQQAVRVAHNLPFDESFLNMELARAGYPPL-TGPAL 126

Query: 125 DTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           DTL +ARR         L +L   +G+       H A+ D   L  ++ +++   +  ++
Sbjct: 127 DTLELARRLGIRRGSLSLGALATSFGLPTP---THRAMDDVLTLHALFDRLVAKLA--DY 181

Query: 184 GFKTNEDRF 192
           G  T  D  
Sbjct: 182 GVTTLYDAL 190


>gi|81428523|ref|YP_395523.1| ATP-dependent helicase [Lactobacillus sakei subsp. sakei 23K]
 gi|78610165|emb|CAI55214.1| Putative ATP-dependent helicase, DinG family [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 944

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG + K  DRII+ G   + +     +T    + P  R    +   L  IT 
Sbjct: 7   YAVVDLETTGTNIKDGDRIIQFGCALVQNGKII-QTISQDVNP-LRDVPTKIQHLTHITA 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L+  P F  +     +  +     ++AHN  FD+ F+N EL R+   PLD +  IDT+
Sbjct: 65  DQLELAPIFEDLAPTLVEILS--GTVFVAHNINFDLPFLNGELTRVGLQPLDLA-GIDTV 121

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +A+   P      L  L +   + I H + H A  D+ + + +++K+
Sbjct: 122 ELAQIILPEAPSYRLQDLTQL--LEIEHDNPHQADSDALVTAKLFLKL 167


>gi|332971471|gb|EGK10424.1| ribonuclease T [Psychrobacter sp. 1501(2011)]
          Length = 268

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 20/191 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGRKNSP 57
           R  K   +V D+ET G D+K D ++E+  + ++                L P  G     
Sbjct: 57  RFRKFLPVVVDVETAGFDAKTDALLELACIPIIMDEQGKFIPGEALNAHLNPFEGANLEQ 116

Query: 58  EALKLHGIT--DEFLK-----DKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107
            AL   GI   +   K     ++P+   IF E      E +      + HNA FD+ F+N
Sbjct: 117 RALDFTGIDPNNPMRKAIAEEEQPALRRIFKELKAVRKENDCLKCILVGHNAHFDLSFLN 176

Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A ++R N    +P     ++DT++++       +  L   CK  GI  S    H AL D+
Sbjct: 177 AAIERTNSKNHNPFHQFSVLDTVTLSALAF--GQTVLARACKAAGIEFSGTEAHSALYDT 234

Query: 165 HLLSDVYIKMM 175
              ++++  ++
Sbjct: 235 QKTAELFCHIL 245


>gi|77361037|ref|YP_340612.1| ribonuclease T [Pseudoalteromonas haloplanktis TAC125]
 gi|76875948|emb|CAI87170.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 232

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA-VELLDYSK---TNRTFQVFLCPN-GRKNSPEALKLH 63
            +V D+ET G +   D ++EI   V  +D       + T    + P         A++ +
Sbjct: 18  PVVIDVETGGFNKDTDALLEIAVSVLKMDDEGLLSIDHTVHFHVEPFADANIEQAAIEFN 77

Query: 64  GITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI     L+          E              Q +  +AHNA FD GF+NA ++R  I
Sbjct: 78  GIDPFSALRGAVPEEHAIKEICKVVRKAQKAAGCQRSVVVAHNAAFDHGFLNAAIERNNI 137

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT S+A       +  L   C+  GI   +   H AL D+   +++Y  
Sbjct: 138 KRTPFHPFVSFDTTSLAGLAL--GQTVLAKACRAAGIEFDNSQAHSALYDTERTAELYCL 195

Query: 174 MMVGGSQIN 182
           ++    Q+ 
Sbjct: 196 IVNRWQQLG 204


>gi|322380763|ref|ZP_08054869.1| DNA polymerase III subunit epsilon [Helicobacter suis HS5]
 gi|321146767|gb|EFX41561.1| DNA polymerase III subunit epsilon [Helicobacter suis HS5]
          Length = 219

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 13/178 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAV------ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
               DIETTG   +N  +IEI A+        +   +  R+F   +  +  +  P+  +L
Sbjct: 36  YCFVDIETTGSKPENSSMIEIAALLYEPPKNPMHKGQIIRSFSSLI--HCLEVPPKITEL 93

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G++ + LK+ P   ++  +F  F   Q+  ++AHNA FD  FI+A   ++    L  ++
Sbjct: 94  TGLSTDDLKEAPPLEAVLQDFKLFI--QDHIFVAHNADFDFHFISACCAQVLDSALSNAK 151

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            + TL++AR+  PS R+ L  L    G+ I     H A  D+     V+   +    Q
Sbjct: 152 -LCTLNLARKCIPSPRHGLQFLNTFLGLDIP--ISHRAYADALASLRVFEHCLRVLPQ 206


>gi|81428950|ref|YP_395950.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78610592|emb|CAI55643.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 178

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + + D    I  V + +    ++ F   + P    +S  + ++HGI 
Sbjct: 1   MNFVAMDFETA--NGQRDSACSIALVVVRNDQIVDQ-FYTLIKPETYFSSRNS-QIHGIY 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ +   P F  ++     FF  Q    +AHNA FD+G + + LQ  +  P      +DT
Sbjct: 57  EDDVAQAPKFDQVWPHIAPFFTPQKLV-VAHNATFDIGVLRSTLQHYDI-PEPHYLALDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L+ +RR +P    + LN+LC    I + +   H AL DS   + + IK
Sbjct: 115 LTTSRRLYPQFKNHKLNTLCTNLEIPLENH--HNALADSIACAKILIK 160


>gi|256043519|ref|ZP_05446446.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 224

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 9/218 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++    +    + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +  T+  ARR        L+    + G+  +   +HGAL D++L + +Y+        +
Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQDV 179

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                        +  K  P     +  +    R +  
Sbjct: 180 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 217


>gi|116514018|ref|YP_812924.1| Rad3-related DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093333|gb|ABJ58486.1| Rad3-related DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 930

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 9/175 (5%)

Query: 9   KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    + DRII+ G   + D  +  +T+   + P+ RK       L GI  
Sbjct: 10  FAVVDLETTGTRKEEGDRIIQFGCAIVKDG-EVVKTYSFMMNPH-RKIPLAVTNLTGIDQ 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + D+  F     +  +    Q+  ++AHN  FD  F+N EL     + L   + +DT+
Sbjct: 68  KMVADQADFKHYAPKIREIL--QDTVFVAHNVNFDFPFLNYELTNAGFEAL-TCKAVDTV 124

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +A+   P+     L  L     + I H + H A  D++  + + +K++   + +
Sbjct: 125 ELAKIAFPTLPSYKLRDLTA--SLEIKHANPHKADSDAYGTAVLLLKIIDKLASL 177


>gi|145634678|ref|ZP_01790387.1| ribonuclease T [Haemophilus influenzae PittAA]
 gi|145268223|gb|EDK08218.1| ribonuclease T [Haemophilus influenzae PittAA]
 gi|309972517|gb|ADO95718.1| Ribonuclease T [Haemophilus influenzae R2846]
          Length = 229

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +          + Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVM 133

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R    ++P  P  + DT S+A       +  L   C    I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMMVGGSQIN 182
             + ++  M+     + 
Sbjct: 192 RTAKLFCYMVNHLKDLG 208


>gi|152988793|ref|YP_001347003.1| ribonuclease T [Pseudomonas aeruginosa PA7]
 gi|166200015|sp|A6V1R8|RNT_PSEA7 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|150963951|gb|ABR85976.1| ribonuclease T [Pseudomonas aeruginosa PA7]
          Length = 224

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 18/197 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI A    ++   +     T+   + P  G    P AL+  
Sbjct: 31  PVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFT 90

Query: 64  GI-TDEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  D  L+         +E +            + A  + HN+ FD+GF+NA + R   
Sbjct: 91  GIKLDHPLRMAVQEEQALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGI 150

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  G+   +R  H A  D+   ++++  
Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCG 208

Query: 174 MMVGGSQINFGFKTNED 190
           ++    ++  G+  ++D
Sbjct: 209 IVNRWKEMG-GWMDDDD 224


>gi|322373090|ref|ZP_08047626.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C150]
 gi|321278132|gb|EFX55201.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C150]
          Length = 828

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  KN  +  + D+E T   S    II++G V + +    +  F   + P+ +K     +
Sbjct: 1   MSEKNTNKYAIVDLEAT-FASSMASIIQVGIVIMQNGQVIDE-FASDVNPH-QKLDDHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I  + +D    ++  ++AHN KFD   ++  L     +   P
Sbjct: 58  HLTGITDQQLAQAPDFSEIARKIFDLI--EDCIFVAHNVKFDANLLSEALFMEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +DT+ +A+  +P+     L+ L K   + ++    H A+ D+     +   +M   +
Sbjct: 116 --RVDTVELAQVFYPTLEHYKLSHLSKVLNLDLA--QAHTAIEDARATGQLLFHLMDKIA 171

Query: 180 QI 181
            +
Sbjct: 172 SL 173


>gi|262044634|ref|ZP_06017689.1| ribonuclease T [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259038035|gb|EEW39251.1| ribonuclease T [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 215

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQP 72

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        E +      +AHNA FD  F    
Sbjct: 73  EALAFNGINPHDPQLGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTA 132

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P    DT +++       +  L+  C   G+       H AL D+   
Sbjct: 133 AERAGLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACIAAGMPFDGAQAHSALYDTEQT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AQLFCEIVNRWKRLG 205


>gi|70726060|ref|YP_252974.1| hypothetical protein SH1059 [Staphylococcus haemolyticus JCSC1435]
 gi|68446784|dbj|BAE04368.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 219

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D ET   + K   I  +G V++++      +F   + P     S   +++HGIT E
Sbjct: 41  FIALDFETA--NGKRTSICSVGMVKVVNNEIV-ESFYTLVNPFDY-FSQTNIEVHGITPE 96

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D PSF  +F     F ++     +AHNA FD+  ++  L+++N +         +  
Sbjct: 97  DVIDAPSFEYVFPYMMQFIDK--LPVVAHNAAFDMNVLHQSLKQLNIET-PSMIYFCSYQ 153

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+R   + R  L  L K Y +       H AL D+   + +  +++
Sbjct: 154 LAKRTIDAYRYGLKHLMKHYKLDF--HGHHDALNDAKACAMITFRLL 198


>gi|332073070|gb|EGI83549.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Streptococcus pneumoniae GA17570]
          Length = 168

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 10/166 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +A+   P   +  L  LC+  GI + H   H AL D+   +++ +
Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163


>gi|120406462|ref|YP_956291.1| DNA polymerase III subunit epsilon [Mycobacterium vanbaalenii
           PYR-1]
 gi|119959280|gb|ABM16285.1| DNA polymerase III, epsilon subunit [Mycobacterium vanbaalenii
           PYR-1]
          Length = 333

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 32/247 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RI+ + A+ L D     ++    L P      P    +HG+T E
Sbjct: 20  WAVVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPG---VDPGPTHVHGLTAE 76

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  +P+F  +  +  +    +    +AHN  FD  F+ AE + ++ + L    ++ T+ 
Sbjct: 77  MLAGQPAFGDVVGDLIEVL--RGRTLVAHNVGFDYSFLTAEAEMVHAE-LPVDTVMCTVE 133

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ------- 180
           +ARR      N  L +L   +G+  +    H AL D+ +L+ +   ++V   +       
Sbjct: 134 LARRLDLGLDNLRLETLAAHWGV--TQMKPHDALDDAMVLAQILKPVLVRAQERRKWLPV 191

Query: 181 --------INFGFKTNEDRFFKEEKKTVP----NISLLKRDKPLF----TRITKEELDEH 224
                    N     +E R  K     +P    N  +    +PL       ++ E    H
Sbjct: 192 HPVSRRTWPNGRITHDEFRPLKALAARMPCAYANPGVFVAGRPLVQGMRVALSAEVGHTH 251

Query: 225 DKTIQTL 231
           ++ ++ +
Sbjct: 252 EELVERI 258


>gi|288905684|ref|YP_003430906.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gallolyticus UCN34]
 gi|288732410|emb|CBI13982.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gallolyticus UCN34]
          Length = 834

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 87/182 (47%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++ N  +  + D+E TG  +    II++G V +++  +  +T+Q  + P+    S   +
Sbjct: 8   MMQVNSQKYAIVDLEATGAHAM-AEIIQVGIV-IIENDEIVKTYQTDVNPHEA-LSEHII 64

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITDE L   P FS +  E +     ++  ++AHN KFD   +  +L     +   P
Sbjct: 65  NLTGITDEQLAKAPDFSQVAQEVFSLI--EDCVFVAHNVKFDANLLAEQLFMEGYELRTP 122

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +DT+ +A+  +P+  +  L +      + +     H A+ D++  + +++K+     
Sbjct: 123 --RVDTVELAQVFYPTFEKYSLGN--LADALALDLADAHTAISDAYATAQLFLKLKAKMK 178

Query: 180 QI 181
            +
Sbjct: 179 SL 180


>gi|152970543|ref|YP_001335652.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|330015632|ref|ZP_08308213.1| ribonuclease T [Klebsiella sp. MS 92-3]
 gi|166228567|sp|A6TA01|RNT_KLEP7 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|150955392|gb|ABR77422.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|328531231|gb|EGF58076.1| ribonuclease T [Klebsiella sp. MS 92-3]
          Length = 215

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQP 72

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        E +      +AHNA FD  F    
Sbjct: 73  EALAFNGINPHDPQRGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTA 132

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P    DT +++       +  L+  C   G+       H AL D+   
Sbjct: 133 AERAGLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACIAAGMPFDGAQAHSALYDTEQT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AQLFCEIVNRWKRLG 205


>gi|325953822|ref|YP_004237482.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
 gi|323436440|gb|ADX66904.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
          Length = 253

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 10/175 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
              FD+ETTG +   DRI+EI  V+   +  K  +T++  + P      PE   +HGI D
Sbjct: 7   ICFFDLETTGTNIAKDRIVEIAIVKAYTNGEKEIKTWR--VNPE-MPIPPETSLIHGIYD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDPSRIIDT 126
           E +KD P+F  I  +  +   + +      N +FD+  +  E  R   D  L+  R ID 
Sbjct: 64  EDVKDAPTFREIAPQIVELIKDSDLAGFNSN-RFDIPLLAEEFLRNGIDFDLEKHRPIDV 122

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
             I  +  P    +L +  K Y       + H A  D+    +V +  +    ++
Sbjct: 123 QVIFHKMEP---RNLAAAYKFY-CDKDLENAHSAEADTLATYEVLMAQIEKYEEL 173


>gi|314936410|ref|ZP_07843757.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655029|gb|EFS18774.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 905

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 8/166 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG   ++D II+IG   + D   +  T+   +     +  P    L  I + 
Sbjct: 6   FAVVDLETTGNQLEHDEIIQIGITFVRDNKISG-TYHSMIR-TDLEIPPFIQALTSIEET 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  + ++    ++  ++AHN  FD+ FI    ++ N     P +++DTL 
Sbjct: 64  MLEQAPYFHEIADDIYEQL--KDCIFVAHNVDFDLNFIKKAFEKSNIH-FKPKKVLDTLE 120

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + +   P+ +   L+ L   + I +++   H A  D+   + + IK
Sbjct: 121 LFKIAFPTEKSYQLSELANAHNIPLTN--AHRADEDATTTAYLMIK 164


>gi|148827473|ref|YP_001292226.1| ribonuclease T [Haemophilus influenzae PittGG]
 gi|166228566|sp|A5UGD7|RNT_HAEIG RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|148718715|gb|ABQ99842.1| ribonuclease T [Haemophilus influenzae PittGG]
          Length = 229

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S  +  +  +          + Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELNAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVM 133

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R    ++P  P  + DT S+A       +  L   C+   I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMMVGGSQIN 182
             + ++  M+     + 
Sbjct: 192 RTAKLFCYMVNHLKDLG 208


>gi|62317520|ref|YP_223373.1| exonuclease [Brucella abortus bv. 1 str. 9-941]
 gi|83269503|ref|YP_418794.1| DNA polymerase III subunit epsilon:exonuclease [Brucella melitensis
           biovar Abortus 2308]
 gi|148557905|ref|YP_001257609.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189022776|ref|YP_001932517.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|225686408|ref|YP_002734380.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella melitensis ATCC 23457]
 gi|254691019|ref|ZP_05154273.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 6 str. 870]
 gi|254695674|ref|ZP_05157502.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698803|ref|ZP_05160631.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254705882|ref|ZP_05167710.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis
           M163/99/10]
 gi|254711110|ref|ZP_05172921.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis B2/94]
 gi|254712430|ref|ZP_05174241.1| DNA polymerase III, epsilon chain [Brucella ceti M644/93/1]
 gi|254715502|ref|ZP_05177313.1| DNA polymerase III, epsilon chain [Brucella ceti M13/05/1]
 gi|254732250|ref|ZP_05190828.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 4 str. 292]
 gi|256015402|ref|YP_003105411.1| exonuclease, putative [Brucella microti CCM 4915]
 gi|256029491|ref|ZP_05443105.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis
           M292/94/1]
 gi|256111454|ref|ZP_05452474.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 3 str.
           Ether]
 gi|256157686|ref|ZP_05455604.1| DNA polymerase III, epsilon chain [Brucella ceti M490/95/1]
 gi|256253341|ref|ZP_05458877.1| DNA polymerase III, epsilon chain [Brucella ceti B1/94]
 gi|256256204|ref|ZP_05461740.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 9 str. C68]
 gi|256262453|ref|ZP_05464985.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|260167417|ref|ZP_05754228.1| DNA polymerase III, epsilon chain [Brucella sp. F5/99]
 gi|260544758|ref|ZP_05820579.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260564713|ref|ZP_05835198.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|261756828|ref|ZP_06000537.1| DNA polymerase III [Brucella sp. F5/99]
 gi|62197713|gb|AAX76012.1| exonuclease, hypothetical [Brucella abortus bv. 1 str. 9-941]
 gi|82939777|emb|CAJ12783.1| DNA polymerase III, epsilon subunit:Exonuclease [Brucella
           melitensis biovar Abortus 2308]
 gi|148369190|gb|ABQ62062.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189021350|gb|ACD74071.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|225642513|gb|ACO02426.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella melitensis ATCC 23457]
 gi|255998062|gb|ACU49749.1| exonuclease, putative [Brucella microti CCM 4915]
 gi|260098029|gb|EEW81903.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260152356|gb|EEW87449.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|261736812|gb|EEY24808.1| DNA polymerase III [Brucella sp. F5/99]
 gi|263092188|gb|EEZ16485.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|326410781|gb|ADZ67845.1| DNA polymerase III, epsilon subunit [Brucella melitensis M28]
          Length = 224

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 9/218 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++    +    + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +  T+  ARR        L+    + G+  +   +HGAL D++L + +Y+        +
Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQGV 179

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                        +  K  P     +  +    R +  
Sbjct: 180 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 217


>gi|145631430|ref|ZP_01787200.1| ribonuclease T [Haemophilus influenzae R3021]
 gi|145632574|ref|ZP_01788308.1| ribonuclease T [Haemophilus influenzae 3655]
 gi|145640270|ref|ZP_01795854.1| ribonuclease T [Haemophilus influenzae R3021]
 gi|144982967|gb|EDJ90476.1| ribonuclease T [Haemophilus influenzae R3021]
 gi|144986769|gb|EDJ93321.1| ribonuclease T [Haemophilus influenzae 3655]
 gi|145274856|gb|EDK14718.1| ribonuclease T [Haemophilus influenzae 22.4-21]
          Length = 229

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   
Sbjct: 14  KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+   S     +  +          + Q +  +AHNA FD  F+ 
Sbjct: 74  NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVM 133

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A  +R    ++P  P  + DT S+A       +  L   C    I    +  H AL D+ 
Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191

Query: 166 LLSDVYIKMMVGGSQIN 182
             + ++  M+     + 
Sbjct: 192 RTAKLFCYMVNHLKDLG 208


>gi|303233442|ref|ZP_07320110.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Atopobium vaginae PB189-T1-4]
 gi|302480450|gb|EFL43542.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Atopobium vaginae PB189-T1-4]
          Length = 539

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 70/177 (39%), Gaps = 12/177 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL   +D + +I AV+      T  TF  F+ P  +       KL  I +  
Sbjct: 84  VFLDTETTGLSFADDSLTQIAAVKRRADG-TFDTFCTFVHPP-KPIPAHISKLTNIYNAD 141

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   P           F     A  +AHNA FD  F+   LQ         S  ID+L++
Sbjct: 142 VAAAPKPKEAVLALAQFVG--GAPIVAHNAAFDKTFVEGVLQH----QTVSSTWIDSLAL 195

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           ++   PS   + L  L   +G     R  H A  D   L+DV+  MM    Q+    
Sbjct: 196 SKIAFPSFNTHKLEDLAVLFGCA---RVTHRADDDCKALADVWHYMMRALCQLPESL 249


>gi|306831779|ref|ZP_07464935.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304425977|gb|EFM29093.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 827

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 87/182 (47%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++ N  +  + D+E TG  +    II++G V +++  +  +T+Q  + P+    S   +
Sbjct: 1   MMQVNSQKYAIVDLEATGAHAM-AEIIQVGIV-IIENDEIVKTYQTDVNPHEA-LSEHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITDE L   P FS +  E +     ++  ++AHN KFD   +  +L     +   P
Sbjct: 58  NLTGITDEQLAKAPDFSQVAQEVFSLI--EDCVFVAHNVKFDANLLAEQLFMEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +DT+ +A+  +P+  +  L +      + +     H A+ D++  + +++K+     
Sbjct: 116 --RVDTVELAQVFYPTFEKYSLGN--LADALALDLADAHTAISDAYATAQLFLKLKAKMK 171

Query: 180 QI 181
            +
Sbjct: 172 SL 173


>gi|300812428|ref|ZP_07092858.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496595|gb|EFK31687.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 930

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 9/175 (5%)

Query: 9   KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    + DRII+ G   + D  +  +T+   + P+ RK       L GI  
Sbjct: 10  FAVVDLETTGTRKEEGDRIIQFGCAIVKDG-EVVKTYSFMMNPH-RKIPLAVTNLTGIDQ 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +  F     +  +    Q+  ++AHN  FD  F+N EL     + L   + +DT+
Sbjct: 68  KMVAGQADFKHYAPKIREIL--QDTVFVAHNVNFDFPFLNYELTNAGFEAL-TCKAVDTV 124

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +A+   P+     L  L     + I H + H A  D++  + + +K++   + +
Sbjct: 125 ELAKIAFPTLPSYKLRDLTA--SLEIKHANPHKADSDAYGTAVLLLKIIDKLASL 177


>gi|228476066|ref|ZP_04060774.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           hominis SK119]
 gi|228269889|gb|EEK11369.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           hominis SK119]
          Length = 905

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 8/166 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG   ++D II+IG   + D   +  T+   +     +  P    L  I + 
Sbjct: 6   FAVVDLETTGNQLEHDEIIQIGITFVRDNKISG-TYHSMIR-TDLEIPPFIQALTSIEET 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  P F  I  + ++    ++  ++AHN  FD+ FI    ++ N     P +++DTL 
Sbjct: 64  MLEQAPYFHEIADDIYEQL--KDCIFVAHNVDFDLNFIKKAFEKSNIH-FKPKKVLDTLE 120

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + +   P+ +   L+ L   + I +++   H A  D+   + + IK
Sbjct: 121 LFKIAFPTEKSYQLSELANAHNIPLTN--AHRADEDATTTAYLMIK 164


>gi|257792837|ref|YP_003183443.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243]
 gi|257476734|gb|ACV57054.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243]
          Length = 966

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 11/173 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG    +D + +I A   ++  +    F  F+ P G+    +   L  I D  
Sbjct: 11  VVLDTETTGFSFNHDELTQIAAAR-MEQGEIVEWFITFVNP-GKPIPEDVAHLTDIHDRD 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P  +   ++  +F    +A+ +AHNA+FD  F        +  PL  +  ID+L +
Sbjct: 69  VADAPLPADALAKLVEFIG--DAKVVAHNAEFDRTFTTRH---PSGYPLLENTWIDSLDL 123

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           AR   P  + + L  L + +G  +S    H A  D      ++  ++ G + +
Sbjct: 124 ARIALPRMKSHRLLDLVRAFGAPLS---THRADADVEATCAIFRILLAGVAAM 173


>gi|313679706|ref|YP_004057445.1| DNA-directed DNA polymerase [Oceanithermus profundus DSM 14977]
 gi|313152421|gb|ADR36272.1| DNA-directed DNA polymerase [Oceanithermus profundus DSM 14977]
          Length = 252

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 8/166 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL    + IIEI  + +         F   + P G    P   +L GI+   
Sbjct: 79  VVLDLETTGLSPSENEIIEIALMRVEPGR--VERFARLVNP-GSPIPPFITRLTGISSAD 135

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P   +   E   +   + A  +  NA FD+GF+     R+       + +IDT+  
Sbjct: 136 VADAPDVYTALEEALPYL--EGAVLVIQNAPFDLGFLRPRACRLGVKI--HNEVIDTVQW 191

Query: 130 A-RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           A R      R  L+ L + + ++I   ++H AL D      V  +M
Sbjct: 192 ARRALPRMRRRGLDHLIRAFEVSIETGARHRALGDVEATWTVAREM 237


>gi|224825206|ref|ZP_03698312.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224602877|gb|EEG09054.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 212

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 7/170 (4%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTGL      R  EI  V L +     R FQ  +   G +  P+  +L GI+
Sbjct: 12  RVAVIDFETTGLSPGIGCRATEIAVVLLENGRVAGR-FQSLMN-AGVRVPPDIERLTGIS 69

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  LK  P   ++  E  +F    +   +AHNA FD  F + EL +  +           
Sbjct: 70  NAMLKAAPPADAVMREAAEFVG--DTPLVAHNAAFDRKFWDYELGQFGRTRRQDFAC-TL 126

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           L   R    +  + L +L +  G+  +    H AL D+ + +++   +  
Sbjct: 127 LLARRLLPAAPNHKLGTLTRWAGLP-ATGQAHRALADAEMAANLMAHLTR 175


>gi|197285252|ref|YP_002151124.1| ribonuclease T [Proteus mirabilis HI4320]
 gi|227355678|ref|ZP_03840072.1| exoribonuclease T [Proteus mirabilis ATCC 29906]
 gi|194682739|emb|CAR42945.1| ribonuclease T [Proteus mirabilis HI4320]
 gi|227164285|gb|EEI49178.1| exoribonuclease T [Proteus mirabilis ATCC 29906]
          Length = 212

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 20/196 (10%)

Query: 5   NKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNS 56
           N+ R    +V D+ET G ++K D ++EI A+ L      + K + T    + P  G    
Sbjct: 12  NRFRGYYPVVIDVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVDPFEGANLE 71

Query: 57  PEALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINA 108
           P AL+  GI     L+   S        +    +         A  +AHNA FD  F+ A
Sbjct: 72  PAALEFTGIDPTNPLRGAVSEYEALHAIFKMVRKGMKDANCNRAIIVAHNANFDHSFVMA 131

Query: 109 ELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +R    ++P  P    DT +++       +  L   C   GI    +  HGAL D++ 
Sbjct: 132 AAERAGLKRNPFHPFATFDTAALSGLVL--GQTILAKACITAGIPFDSKLAHGALYDTNR 189

Query: 167 LSDVYIKMMVGGSQIN 182
            S ++ +++    ++ 
Sbjct: 190 TSLLFCELVNRWKKLG 205


>gi|332290155|ref|YP_004421007.1| ribonuclease T [Gallibacterium anatis UMN179]
 gi|330433051|gb|AEC18110.1| ribonuclease T [Gallibacterium anatis UMN179]
          Length = 224

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 86/200 (43%), Gaps = 20/200 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLC-PNGR 53
           + K++ R    ++ D+ET+GL+++ D ++E+ A+ +    +     +      +    G 
Sbjct: 22  LLKHRFRGYYPVIVDVETSGLNAQTDGLLELAAITVKMDEQGLLHPDEKCHFQIKLFEGA 81

Query: 54  KNSPEALKLHGITDEF-LKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGF 105
              P +LK++GI  +   ++     +  + F+            + +  +AHNA FD  F
Sbjct: 82  NVDPNSLKINGINPDDPQREAVDELTALTGFFQMVRRGQKAAECKRSILVAHNAMFDYNF 141

Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A + R    ++P  P    DT ++A       +  L + C   GI       H AL D
Sbjct: 142 LMAAINRTGIKRNPFHPFSTFDTATLAGFMF--GQTVLRTACDNAGIPFEPSKAHSALYD 199

Query: 164 SHLLSDVYIKMMVGGSQINF 183
           +   ++++  M+    Q N 
Sbjct: 200 TEKTAELFCLMVNKLKQANI 219


>gi|157364228|ref|YP_001470995.1| DNA polymerase III, epsilon subunit [Thermotoga lettingae TMO]
 gi|157314832|gb|ABV33931.1| DNA polymerase III, epsilon subunit [Thermotoga lettingae TMO]
          Length = 188

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 12/190 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEA 59
           +  N+      D ETTG+D    DRI+E+  V +       R+ +   + P  R      
Sbjct: 1   MILNESLFCAMDTETTGIDPMNGDRIVEVAIVPVYKGRILYRSIYHTLVNPKIR-IPATI 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+H IT+E +++ P+   +F +   F     +  I H A+FD+ FI+   + I   P  
Sbjct: 60  EKIHRITNEDIENAPTIEQVFGQMRSFMRR--SIMIFHRAEFDLTFIDISAKEIGIFP-P 116

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VG 177
               IDT  I+       +  L+ L +R+G    +   H AL D+   + +++KM   + 
Sbjct: 117 SIDYIDTREISEIIF-GEKKALSWLAERFGFEKPN---HRALTDAITTAKLFLKMTRKLA 172

Query: 178 GSQINFGFKT 187
           GSQI     T
Sbjct: 173 GSQIEELVHT 182


>gi|332307350|ref|YP_004435201.1| ribonuclease T [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174679|gb|AEE23933.1| ribonuclease T [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 211

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 20/192 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53
           + K++ R    ++ D+ET G +++ D ++E+ A+        Y   ++TF   + P  G 
Sbjct: 7   LLKDRFRGYFPVIVDVETAGFNAQTDALLEVAAITTKMDADGYLTPDKTFHYHVVPFEGA 66

Query: 54  KNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105
                AL+ +GI     L+     + +  +            + Q +  +AHNA FD+GF
Sbjct: 67  NLEKAALEFNGIDPWCALRGALDETEVMKDLCKQIRKEQKDADCQRSVMVAHNAAFDLGF 126

Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           INA ++R  I + P  P    DT ++A       +  L   C+   I+      H AL D
Sbjct: 127 INAAIERSKIKRTPFHPFVSFDTTTLAGLAL--GQTVLVKACQAANISFDQSEAHSALYD 184

Query: 164 SHLLSDVYIKMM 175
           +   +++Y  ++
Sbjct: 185 TQKTAELYCYIV 196


>gi|217970527|ref|YP_002355761.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|217507854|gb|ACK54865.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 203

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 7/160 (4%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            V D ETTGL   + DR  EI AV + D    +R +Q  +   G +       L GIT+ 
Sbjct: 5   AVIDFETTGLSPAQGDRATEIAAVIVEDGRVVDR-YQSLMN-AGVRIPAYIEALTGITNA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P    +  +  DF    +   +AHNA FD  F +AEL RI ++          L 
Sbjct: 63  MVRSAPLAGEVMRDVSDFVG--DMPIVAHNASFDAKFWDAELGRIQRNRKQDFVCS-LLL 119

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             R    +  + L  L +   + ++ R  H AL D+ + +
Sbjct: 120 SRRLLPLAPSHKLGVLVEYANLPVAGR-YHRALADAEMAA 158


>gi|119775228|ref|YP_927968.1| ribonuclease T [Shewanella amazonensis SB2B]
 gi|119767728|gb|ABM00299.1| RNAse T [Shewanella amazonensis SB2B]
          Length = 258

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 85/220 (38%), Gaps = 25/220 (11%)

Query: 5   NKMRK-------IVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-NG 52
           NK++        +V D+ET G +++ D ++EI    + + D      ++T    + P  G
Sbjct: 28  NKLKYRFRGYYPVVIDVETAGFNAQTDALLEIAVTLLTMDDNGMLALDKTLHFHIEPFEG 87

Query: 53  RKNSPEALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVG 104
               P AL  +GI     L+   S      E +          +   A  +AHNA FD G
Sbjct: 88  ANLEPAALAFNGIDPSNPLRGAVSEKEAMLEIFKAVRKGMKAADCHRAVIVAHNAAFDHG 147

Query: 105 FINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+   + R    + P  P    DT  ++          L   CK  GI   ++  H AL 
Sbjct: 148 FVTKAIDRSGVKRSPFHPFATFDTACLSGLAL--GHTVLAQACKIAGIPFDNKEAHSALY 205

Query: 163 DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPN 202
           D+   ++++  ++     +  G+         + + T  +
Sbjct: 206 DTERTAELFCYIVNRWKSLG-GWPLLGAEALDDAENTAAD 244


>gi|325686250|gb|EGD28293.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 930

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 9/175 (5%)

Query: 9   KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    + DRII+ G   + D  +  +T+   + P+ RK       L GI  
Sbjct: 10  FAVVDLETTGTRKEEGDRIIQFGCAIVKDG-EVVKTYSFMMNPH-RKIPLAVTNLTGIDQ 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +  F     +  +    Q+  ++AHN  FD  F+N EL     + L   + +DT+
Sbjct: 68  KMVAGQADFKHYAPKIREIL--QDTVFVAHNVNFDFPFLNYELTNAGFEAL-TCKAVDTV 124

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +A+   P+     L  L     + I H + H A  D++  + + +K++   + +
Sbjct: 125 ELAKIAFPTLPSYKLRDLTA--SLEIKHANPHKADSDAYGTAVLLLKIIDKLASL 177


>gi|238919999|ref|YP_002933514.1| ribonuclease T [Edwardsiella ictaluri 93-146]
 gi|238869568|gb|ACR69279.1| ribonuclease T, putative [Edwardsiella ictaluri 93-146]
          Length = 221

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 17/196 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNS 56
            R      +V D+ET G D+  + ++EI AV L      + +T++     + P  G + S
Sbjct: 12  TRFRGFYPVVIDVETAGFDANRNALLEIAAVTLRMNDDGWLETDQCLHFHIDPFEGAELS 71

Query: 57  PEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINA 108
           PEAL  +GI         + +  +  +IF        +Q    A  +AHNA FD  F+ A
Sbjct: 72  PEALAFNGIDPHNPLRGAVSEYTALHAIFKMVRKGIKDQACNRAVVVAHNAHFDHSFLMA 131

Query: 109 ELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
              R    ++P  P    DT +++       +  L   C    I       H AL D+  
Sbjct: 132 AAARAGLKRNPFHPFATFDTAALSGLVL--GQTVLAKACISAQIPFDSAQAHSALYDTQQ 189

Query: 167 LSDVYIKMMVGGSQIN 182
            + ++ +++    ++ 
Sbjct: 190 TATLFCELVNRWKRLG 205


>gi|114562633|ref|YP_750146.1| ribonuclease T [Shewanella frigidimarina NCIMB 400]
 gi|122300177|sp|Q084K7|RNT_SHEFN RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|114333926|gb|ABI71308.1| RNAse T [Shewanella frigidimarina NCIMB 400]
          Length = 221

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL---DYSKT-NRTFQVFLCP-NGRKN 55
           K++ R    +V D+ET G ++  D ++EI    L    D     +RT    + P  G   
Sbjct: 11  KHRFRGYFPVVIDVETAGFNANTDALLEIAVSLLKMNSDGVIVLDRTLHFNIEPFEGANL 70

Query: 56  SPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107
            P AL  +GI         + +K +F  IF E        +      +AHNA FD+GF+N
Sbjct: 71  EPAALAFNGIDPTNPLRGAVDEKVAFLEIFKEVKKAQKAADCHRSIIVAHNAAFDLGFVN 130

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
             ++R  + + P  P    DT ++A          L   CK  GI   ++  H AL D+ 
Sbjct: 131 KAIERNGLKRSPFHPFASFDTATLAGLAI--GHTVLAKACKMAGIDFDNKEAHSALYDTE 188

Query: 166 LLSDVYIKMMVGGSQIN 182
             ++++  ++     + 
Sbjct: 189 RTAELFCLIVNRWKALG 205


>gi|33151799|ref|NP_873152.1| ribonuclease T [Haemophilus ducreyi 35000HP]
 gi|54036330|sp|Q7VND8|RNT_HAEDU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|33148020|gb|AAP95541.1| ribonuclease T [Haemophilus ducreyi 35000HP]
          Length = 214

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 20/199 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53
           + K++ R    ++ D+ET GL++K D ++E+ A+ +      Y   ++     + P    
Sbjct: 10  LLKHRFRGYLPVIIDVETAGLNAKTDALLELAAITVKMDQQGYLVPDQKCHFHIQPFENA 69

Query: 54  KNSPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGF 105
             + ++LK +GI         + +  +   +F        EQ       +AHNA FD  F
Sbjct: 70  NINADSLKFNGIDIHNPLRGAVAEAIAIPEMFKMVRRAIKEQGCQRAVIVAHNATFDQAF 129

Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A ++RIN  +DP  P  + DT S+A   +   +  L   C+   I    +  H AL D
Sbjct: 130 LQAAVKRINAKRDPFHPFAMFDTASLAGLMY--GQTVLVKACQIANIAFDGKQAHSALYD 187

Query: 164 SHLLSDVYIKMMVGGSQIN 182
           +   ++++  M+     + 
Sbjct: 188 TEKTTELFCAMVNRLKDLG 206


>gi|222824026|ref|YP_002575600.1| DNA polymerase III, epsilon subunit [Campylobacter lari RM2100]
 gi|222539248|gb|ACM64349.1| DNA polymerase III, epsilon subunit [Campylobacter lari RM2100]
          Length = 254

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 13/184 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIE+TG   K+ +I+EIGAV++ +Y + +R F+ F+            +L GI+ +
Sbjct: 72  FCVVDIESTGG-IKSGQILEIGAVKIQNYKEIDR-FESFVKVE--SIPENITELTGISLD 127

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ PS  ++ + F  F   +++ ++AHN +FD  FI+  +   +   L  +R + T+ 
Sbjct: 128 MVENAPSLKTVLNNFKLFL--KDSIFVAHNVRFDYHFISKAMYENDFGVLL-NRRLCTID 184

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +A++   S +  L++L +   I   H   H AL D+   S++    +    +I F  K  
Sbjct: 185 LAKKCIESPKYGLDALKEFLCIESKH---HRALSDALAASEILKYCL---KKIPFYIKNT 238

Query: 189 EDRF 192
           E+  
Sbjct: 239 EELL 242


>gi|289423924|ref|ZP_06425717.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
 gi|289155701|gb|EFD04373.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
          Length = 188

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 14/166 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIET+GL+ + + I+E+GAV + D       ++  + P  +  S EA K++G+T  
Sbjct: 27  YTVIDIETSGLNPEKNEILELGAVRVRDN-IVVAEYEQLIRP-RKSISKEATKVNGLTKR 84

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D+P    +  +F DF  +     I HN +FD+ FI  +L          ++ IDTL 
Sbjct: 85  MLIDEPFVEDVIWDFKDFLGKD--VLIGHNIEFDLEFIRNQL-------PIRNKYIDTLP 135

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +AR+     R+ L  +C  Y I   +   H ++ D +     Y KM
Sbjct: 136 LARKLLKIKRHRLIDICHHYKIPEPN---HRSISDCNATHLCYQKM 178


>gi|260101291|ref|ZP_05751528.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075]
 gi|260084876|gb|EEW68996.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075]
          Length = 929

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 6   KMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K    V D+ETTG    K   II+ G   ++   K  +T+   + P+ R+     + L G
Sbjct: 7   KDTFAVVDLETTGTQREKGHHIIQFGC-AIIKNMKVVKTYSFMINPH-REIPQSVVNLTG 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I +E ++ K  FS    +  +    +   ++AHN  FD+ F+N EL +   + L  ++ I
Sbjct: 65  IHNEDVQGKDDFSVYAPKIIEIL--KGTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAI 121

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           DT+ +A+   P+     L+ L  +  I   H + H A  D++  + + IK++     +
Sbjct: 122 DTVELAKIAFPTLPSYKLSDLTAQLKIK--HLNPHKADSDAYGTAVLLIKIIHKLESL 177


>gi|255523029|ref|ZP_05390001.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans
           P7]
 gi|255513144|gb|EET89412.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans
           P7]
          Length = 862

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 8/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
              K   IVFD+E+TG+D   D II+I A+++    +    F+ FL  N  K+   +  +
Sbjct: 491 EFQKDNIIVFDVESTGVDVTEDEIIQIAAIKVNKNGQVTEKFERFLKNN--KSVKNSEHV 548

Query: 63  HGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           HG +DEFL K+    +++  EF  F   +++  + HN ++D+  + +ELQR         
Sbjct: 549 HGFSDEFLKKNGEDKNTVLKEFVKF--SEDSVIVGHNVQYDINILTSELQRAGLGEPKFK 606

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              DTL I RR HP+ R + L +L   +     ++  H A+ D     D+ ++ +
Sbjct: 607 AFYDTLDIYRRFHPNLRNHKLETLSHIF--ETENKPSHDAMDDIQATKDILVRAI 659


>gi|120436251|ref|YP_861937.1| exonuclease family protein [Gramella forsetii KT0803]
 gi|117578401|emb|CAL66870.1| exonuclease family protein [Gramella forsetii KT0803]
          Length = 223

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 15/179 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63
           + +R IVFD ETTG +   DR++ IGAV + + S   +  F+VFL    +K +PE +K+H
Sbjct: 35  SDIRFIVFDTETTGFNYDEDRVLSIGAVRIENNSIEISDNFEVFL--EQKKFNPETVKIH 92

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI      +K S      +F  +   QN+  +AH+A FD+  IN  L R     L  +++
Sbjct: 93  GIIQNEKFEKLSELEALKKFLSYI--QNSVLVAHHAGFDMKMINKALSRNGLPKL-KNKV 149

Query: 124 IDTLSIARRKHPSSR-------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DT  + ++   ++          L+ + + Y I +  R  H A  D+++ + +++K++
Sbjct: 150 LDTSILYKKTRIATNFIDRDKIYSLDEIAEAYNIDLIDR--HTASGDAYITALIFMKLL 206


>gi|110805628|ref|YP_689148.1| ribonuclease T [Shigella flexneri 5 str. 8401]
 gi|123147001|sp|Q0T4C2|RNT_SHIF8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|110615176|gb|ABF03843.1| RNase T [Shigella flexneri 5 str. 8401]
          Length = 215

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 81/202 (40%), Gaps = 22/202 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +   I                  +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPNDPDRGAVSEYEALHEICKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190

Query: 168 SDVYIKMM-----VGGSQINFG 184
           + ++ +++     +GG  +  G
Sbjct: 191 AVLFCEIVNRWKRLGGWPLPAG 212


>gi|145221884|ref|YP_001132562.1| DNA polymerase III subunit epsilon [Mycobacterium gilvum PYR-GCK]
 gi|145214370|gb|ABP43774.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK]
          Length = 345

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 25/213 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RI+ + A+ L D     ++    L P      P    +HG+T E
Sbjct: 32  WAVVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPG---VDPGPTHVHGLTAE 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+ +P+F  +  +  +    +    +AHN  FD  F++AE + +  + L    ++ T+ 
Sbjct: 89  MLEGQPTFGDVVGDLCEVL--RGRTLVAHNVGFDYSFLSAEAELVGAE-LPIDTVMCTVE 145

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +G+  +    H AL D+ +L+ +   ++V           
Sbjct: 146 LARRLDLGLENLRLETLAAHWGV--TQMRPHDALDDAMVLAQILKPVLVRA--------- 194

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
                 +E +K +P   + +R  P   R+T +E
Sbjct: 195 ------QERRKWLPVHPVGRRTWP-NGRVTHDE 220


>gi|322378997|ref|ZP_08053400.1| DNA polymerase III subunit epsilon (DnaQ) [Helicobacter suis HS1]
 gi|321148489|gb|EFX42986.1| DNA polymerase III subunit epsilon (DnaQ) [Helicobacter suis HS1]
          Length = 219

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 13/178 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAV------ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
               DIETTG   +N  +IEI A+        +   +  R+F   +  +  +  P+  +L
Sbjct: 36  YCFVDIETTGSKPENSSMIEIAALLYEPPKNPMHKGQIIRSFSSLI--HCLEVPPKITEL 93

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G++ + LK+ P   ++  +F  F   Q+  ++AHNA FD  FI+A   ++    L  ++
Sbjct: 94  TGLSTDDLKEAPPLEAVLQDFKLFI--QDHIFVAHNADFDFHFISACCVQVLDSALSNAK 151

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            + TL++AR+  PS R+ L  L    G+ I     H A  D+     V+   +    Q
Sbjct: 152 -LCTLNLARKCIPSPRHGLQFLNTFLGLDIP--ISHRAYADALASLRVFEHCLRVLPQ 206


>gi|262204572|ref|YP_003275780.1| exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
           DSM 43247]
 gi|262087919|gb|ACY23887.1| Exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
           DSM 43247]
          Length = 590

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 10/210 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTG +++ DR++ +  + L    +    +   L P      P  + +H +T +
Sbjct: 10  WVLVDVETTGTNARRDRVLSLATMTLDYDGRVEDEYATLLNPGC---DPGPVHIHNLTRD 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P+F    S        +    +AHNA FD GF+  E +R+    L     + T++
Sbjct: 67  RLHGAPTFDVTMSPLQQMLAGR--TMVAHNATFDHGFLVEEARRLG-ATLPIDHRLCTVT 123

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +GI    R+ H A  D   L++V+ + +     +      
Sbjct: 124 LARRLQLDVPNVKLGTLATYWGIR--QRAAHDARDDVRTLAEVFRRSLDLAETLGLRLPV 181

Query: 188 NEDRFFKEE-KKTVPNISLLKRDKPLFTRI 216
                        V  +    RD   F   
Sbjct: 182 VACGVNSRAFPDKVTRVPCPWRDPGRFDPA 211


>gi|317492115|ref|ZP_07950545.1| ribonuclease T [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919820|gb|EFV41149.1| ribonuclease T [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 218

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G D+  + ++EI AV L      + + + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFDANTNALLEIAAVTLRMTDDGWLEPDETLHFHVEPFVGSVLVP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI  E      + +  +  +IF        E +      +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPENPLRGAVSEYEALHAIFKAVRKGIKEHDCNRAVIVAHNAHFDHSFVMAA 132

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R+   ++P  P    DT +++       +  L   C    I       H AL D+   
Sbjct: 133 AERVGLKRNPFHPFATFDTAALSGLVL--GQTVLAKACIAANIPFDSTQAHSALYDTEQT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 ATLFCELVNRWKRMG 205


>gi|322381856|ref|ZP_08055810.1| ATP-dependent DNA helicase-like protein/DNA polymerase 3 subunit
           epsilon-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154244|gb|EFX46566.1| ATP-dependent DNA helicase-like protein/DNA polymerase 3 subunit
           epsilon-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 957

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 9/175 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +    M+  V D ETT   S  D II++G V + ++  T+R +   + P G +       
Sbjct: 1   METTGMKFAVLDFETT-GTSTTDTIIQVGLVIIDEFDITDR-YTSLVNP-GVRIPSSITS 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++ PS   + ++ +   +  +   +AH+A FD  F+   L +    P    
Sbjct: 58  LTGITDEMVENAPSVEKVMADLYPLLS--DCVLVAHHASFDHAFLQRSLTKAGYPPF-TG 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R++DT+   R   PS     L  +C  +GI   H + H A  D+ + ++++I++M
Sbjct: 115 RVLDTIDALRVAFPSLGSFQLGHVCSLFGIE--HENPHQANCDAQVTAELWIRIM 167


>gi|15598724|ref|NP_252218.1| ribonuclease T [Pseudomonas aeruginosa PAO1]
 gi|107103040|ref|ZP_01366958.1| hypothetical protein PaerPA_01004109 [Pseudomonas aeruginosa PACS2]
 gi|116051527|ref|YP_789637.1| ribonuclease T [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218890245|ref|YP_002439109.1| ribonuclease T [Pseudomonas aeruginosa LESB58]
 gi|254242188|ref|ZP_04935510.1| ribonuclease T [Pseudomonas aeruginosa 2192]
 gi|296387969|ref|ZP_06877444.1| ribonuclease T [Pseudomonas aeruginosa PAb1]
 gi|313108873|ref|ZP_07794856.1| ribonuclease T [Pseudomonas aeruginosa 39016]
 gi|14548235|sp|Q9HY82|RNT_PSEAE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|122260667|sp|Q02QZ9|RNT_PSEAB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|9949677|gb|AAG06916.1|AE004773_5 ribonuclease T [Pseudomonas aeruginosa PAO1]
 gi|115586748|gb|ABJ12763.1| ribonuclease T [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126195566|gb|EAZ59629.1| ribonuclease T [Pseudomonas aeruginosa 2192]
 gi|218770468|emb|CAW26233.1| ribonuclease T [Pseudomonas aeruginosa LESB58]
 gi|310881358|gb|EFQ39952.1| ribonuclease T [Pseudomonas aeruginosa 39016]
          Length = 224

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 18/197 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI A    ++   +     T+   + P  G    P AL+  
Sbjct: 31  PVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFT 90

Query: 64  GI-TDEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  D  L+      +  +E +            + A  + HN+ FD+GF+NA + R   
Sbjct: 91  GIKLDHPLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGI 150

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  G+   +R  H A  D+   ++++  
Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCG 208

Query: 174 MMVGGSQINFGFKTNED 190
           ++    ++  G+  ++D
Sbjct: 209 IVNRWKEMG-GWMDDDD 224


>gi|311896062|dbj|BAJ28470.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 617

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 11/205 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ET+GL ++ DR++ I  +           +   L P      P  + +HG+T E L+
Sbjct: 22  VDVETSGLVARRDRVLSIAVLTFAPDGTQTGEYTTLLDPGC---DPGPVHVHGLTAERLR 78

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P+F  +        + +    +AHNA+FD  F+  E  R  +  L  +R + TL++ R
Sbjct: 79  GAPAFEQVADRIGALLDGR--VMVAHNAQFDYDFLAHEFARA-RLHLPVARRLCTLALNR 135

Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           R  P      L SL   YG+       H AL D+ +L+ ++   +   +++         
Sbjct: 136 RVEPPVAGLSLASLAAYYGVP--QTRAHDALDDTRVLAGIFRSSLAEAARLGVPLPLVAC 193

Query: 191 RFFKEEK--KTVPNISLLKRDKPLF 213
              ++ +     P      R+    
Sbjct: 194 PPRQDARFAPKPPKTPCAYRNPGRP 218


>gi|88860421|ref|ZP_01135059.1| RNase T [Pseudoalteromonas tunicata D2]
 gi|88817619|gb|EAR27436.1| RNase T [Pseudoalteromonas tunicata D2]
          Length = 221

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE-LLDYSKT---NRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +++ D ++EI      +D       ++T    + P  G      A++ +
Sbjct: 18  PVVIDVETAGFNNQTDALLEIAVTTLKMDDEGVLSLDKTLHFHITPFEGANIEQAAIEFN 77

Query: 64  GITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI     L+     S  F E   F          Q +  +AHNA FD GF+NA ++R   
Sbjct: 78  GIDPFSALRGAVEESIAFKEICKFVSKSQKDAGCQRSVIVAHNAAFDQGFVNAAVERCKI 137

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT S+A       +  L   C   GI   +   H A+ D+   ++++  
Sbjct: 138 KRTPFHPFVSFDTTSLAGLAL--GQTVLAKACIAAGIEFDNSQAHSAVYDTERTAELFCF 195

Query: 174 MMVGGSQIN 182
           ++     + 
Sbjct: 196 IVNKWQALG 204


>gi|92114250|ref|YP_574178.1| ribonuclease T [Chromohalobacter salexigens DSM 3043]
 gi|122419726|sp|Q1QVM9|RNT_CHRSD RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|91797340|gb|ABE59479.1| RNAse T [Chromohalobacter salexigens DSM 3043]
          Length = 221

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 24/203 (11%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G +++ D ++EI AV    +       + T    + P  G     
Sbjct: 13  RFRGFLPVVVDLETGGFNAQRDALLEIAAVTLTMDAQGNLMPDDTHAFHVRPFEGANIEQ 72

Query: 58  EALKLHGITDE-------FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFIN 107
            AL   GI  +        L +  +   IF              A  + HNA FD GF+N
Sbjct: 73  AALDFTGIDLDSPLRQQVALSEHDALGEIFKPVRKAIKANQCTRAILVGHNAAFDQGFLN 132

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A ++R  I ++P  P    DT ++    +   +  L   C+  GI   + S H A  D+ 
Sbjct: 133 AAVERNGIKRNPFHPFSCFDTATLGGLVY--GQTVLARACRAAGIEFDNASAHSARYDTE 190

Query: 166 LLSDVYIKMM-----VGGSQINF 183
             ++++  M+     +GG  +  
Sbjct: 191 RTAELFCAMVNRYKNLGGWDLAL 213


>gi|302334813|ref|YP_003800020.1| DNA polymerase III, epsilon subunit [Olsenella uli DSM 7084]
 gi|301318653|gb|ADK67140.1| DNA polymerase III, epsilon subunit [Olsenella uli DSM 7084]
          Length = 1001

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 12/196 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGL  ++  +IEI A  +         FQ F+ P G    PE   L  I+D 
Sbjct: 57  FVVLDTETTGLSFRDCELIEIAAARIR-GGVVEERFQTFVHPMG-PIPPEISALTHISDL 114

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D PS     +   +F        +AHNA FD  F+ +    +          IDTL+
Sbjct: 115 DVTDAPSAVDAVAALSEFVA--GDPVLAHNATFDRTFVES----VPGGRDVSDNWIDTLA 168

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R   P  S + L  + + +G      + H A  D   L+ ++  M+V    +  G   
Sbjct: 169 LSRIALPRLSSHRLADMARAFGCD---SATHRATADVEALAGMWRIMLVALMDLPSGLLD 225

Query: 188 NEDRFFKEEKKTVPNI 203
                 +E    +  I
Sbjct: 226 LLSTMHEEVDWQLRPI 241


>gi|57652115|ref|YP_186779.1| exonuclease [Staphylococcus aureus subsp. aureus COL]
 gi|87160447|ref|YP_494527.1| exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195792|ref|YP_500602.1| hypothetical protein SAOUHSC_02110 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151222044|ref|YP_001332866.1| exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161510116|ref|YP_001575775.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141184|ref|ZP_03565677.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258451040|ref|ZP_05699076.1| exonuclease [Staphylococcus aureus A5948]
 gi|262049938|ref|ZP_06022798.1| hypothetical protein SAD30_1408 [Staphylococcus aureus D30]
 gi|262053185|ref|ZP_06025343.1| hypothetical protein SA930_1190 [Staphylococcus aureus 930918-3]
 gi|282923233|ref|ZP_06330914.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9765]
 gi|284024940|ref|ZP_06379338.1| exonuclease [Staphylococcus aureus subsp. aureus 132]
 gi|294849443|ref|ZP_06790185.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9754]
 gi|304379080|ref|ZP_07361827.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57286301|gb|AAW38395.1| exonuclease [Staphylococcus aureus subsp. aureus COL]
 gi|87126421|gb|ABD20935.1| exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87203350|gb|ABD31160.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374844|dbj|BAF68104.1| exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368925|gb|ABX29896.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257861282|gb|EEV84094.1| exonuclease [Staphylococcus aureus A5948]
 gi|259158912|gb|EEW43998.1| hypothetical protein SA930_1190 [Staphylococcus aureus 930918-3]
 gi|259161946|gb|EEW46528.1| hypothetical protein SAD30_1408 [Staphylococcus aureus D30]
 gi|282593144|gb|EFB98143.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9765]
 gi|294823580|gb|EFG40007.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9754]
 gi|302751766|gb|ADL65943.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304342315|gb|EFM08207.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315196235|gb|EFU26590.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320139726|gb|EFW31595.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320142357|gb|EFW34171.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329314570|gb|AEB88983.1| Exonuclease [Staphylococcus aureus subsp. aureus T0131]
 gi|329728665|gb|EGG65095.1| exonuclease [Staphylococcus aureus subsp. aureus 21189]
          Length = 184

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V+++D   T  TF   + P     S + +K+HGI  E
Sbjct: 6   FVALDFETA--NGKRTSICSVGMVKVIDSQIT-ETFHTLVNPQDY-FSQQNIKIHGIQPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P+F  +F     F    +   +AHNA FD+  ++  +Q I   P        +  
Sbjct: 62  DVENAPTFDYVFPYMMQFIA--DLPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQ 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +A+R   S R  L  + + Y +       H AL D+   + +  +++     + +
Sbjct: 119 LAKRTVDSYRYGLKHMMEFYQLDF--HGHHDALNDAKACAMITFRLLKNYENLTY 171


>gi|15616303|ref|NP_244608.1| hypothetical protein BH3741 [Bacillus halodurans C-125]
 gi|10176365|dbj|BAB07460.1| BH3741 [Bacillus halodurans C-125]
          Length = 219

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 7/171 (4%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             VFD ETTG      DR+IE+ AV +     T+ TFQ ++ P  R    E  +L GI++
Sbjct: 27  FTVFDTETTGFAVGAGDRLIEVAAVHVEGLEVTDFTFQTYVNPE-RNIPAEIEELTGISE 85

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           + +K+ P+       F+ F  +   A W+ H A FDV  +  ELQR     L+   + DT
Sbjct: 86  DKVKNAPASLPAIESFFRFVEQSGSAAWVGHYASFDVTVLKKELQRYQFS-LNVPLLFDT 144

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           L +     PS    DL    K++G  I  R  H AL D+   + ++ +++ 
Sbjct: 145 LDLIGYISPSKDMRDLEVYAKQFGTYIYER--HQALGDALTTAHLFCELLR 193


>gi|308068487|ref|YP_003870092.1| DNA polymerase III subunit epsilon [Paenibacillus polymyxa E681]
 gi|305857766|gb|ADM69554.1| DNA polymerase III, epsilon chain [Paenibacillus polymyxa E681]
          Length = 245

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 10/178 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEA 59
              +++  +VFD+ETTG  ++  D I+  GA+ ++      +  F   + P         
Sbjct: 53  TPLDRLETVVFDLETTGFSAQHGDEILSFGAIRVVGDMVMEKEQFYTLVNPRTV-IPEHI 111

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L GIT E     P   +   +F  F   +    +AH +  D  F+NA L + +K  L 
Sbjct: 112 TELTGITREMTDQAPPLMNGLHDFMSFVGGR--VLVAHASAHDKAFLNAALWKTSKVQL- 168

Query: 120 PSRIIDTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R++DT+ +A+   P       L+ L     I I  R  H AL D+ + + +++  +
Sbjct: 169 THRVLDTMMLAKWLEPQQHQTYSLDELLAYQSIPIEGR--HHALEDAKMTAKLWVAYV 224


>gi|206580062|ref|YP_002238188.1| ribonuclease T [Klebsiella pneumoniae 342]
 gi|288935177|ref|YP_003439236.1| ribonuclease T [Klebsiella variicola At-22]
 gi|290509235|ref|ZP_06548606.1| ribonuclease T [Klebsiella sp. 1_1_55]
 gi|206569120|gb|ACI10896.1| ribonuclease T [Klebsiella pneumoniae 342]
 gi|288889886|gb|ADC58204.1| ribonuclease T [Klebsiella variicola At-22]
 gi|289778629|gb|EFD86626.1| ribonuclease T [Klebsiella sp. 1_1_55]
          Length = 215

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDETLHFHVEPFEGANLQP 72

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        E +      +AHNA FD  F    
Sbjct: 73  EALAFNGINPHDPERGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTA 132

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P    DT +++       +  L+  C   G+       H AL D+   
Sbjct: 133 AERAGLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACIAAGMAFDGAQAHSALYDTEQT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AQLFCEIVNRWKRLG 205


>gi|15924884|ref|NP_372418.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927468|ref|NP_375001.1| hypothetical protein SA1710 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283564|ref|NP_646652.1| hypothetical protein MW1835 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49484135|ref|YP_041359.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486713|ref|YP_043934.1| putative exonuclease [Staphylococcus aureus subsp. aureus MSSA476]
 gi|82751547|ref|YP_417288.1| DNA polymerase III alpha chain [Staphylococcus aureus RF122]
 gi|148268366|ref|YP_001247309.1| exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394428|ref|YP_001317103.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156980210|ref|YP_001442469.1| hypothetical protein SAHV_1879 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253316903|ref|ZP_04840116.1| hypothetical protein SauraC_12304 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253729653|ref|ZP_04863818.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253734998|ref|ZP_04869163.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|255006681|ref|ZP_05145282.2| hypothetical protein SauraM_09445 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257426026|ref|ZP_05602448.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428699|ref|ZP_05605094.1| exonuclease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431309|ref|ZP_05607685.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257434027|ref|ZP_05610378.1| DNA polymerase subunit III alpha [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436931|ref|ZP_05612973.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus M876]
 gi|257793752|ref|ZP_05642731.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9781]
 gi|258408894|ref|ZP_05681176.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|258421002|ref|ZP_05683933.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9719]
 gi|258422971|ref|ZP_05685870.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9635]
 gi|258430026|ref|ZP_05688396.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9299]
 gi|258443456|ref|ZP_05691798.1| DNA polymerase subunit III alpha [Staphylococcus aureus A8115]
 gi|258445314|ref|ZP_05693505.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A6300]
 gi|258447878|ref|ZP_05696012.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A6224]
 gi|258453311|ref|ZP_05701296.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A5937]
 gi|269203547|ref|YP_003282816.1| exonuclease [Staphylococcus aureus subsp. aureus ED98]
 gi|282894561|ref|ZP_06302789.1| exonuclease [Staphylococcus aureus A8117]
 gi|282904525|ref|ZP_06312410.1| exonuclease [Staphylococcus aureus subsp. aureus C160]
 gi|282906298|ref|ZP_06314150.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282909214|ref|ZP_06317030.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911519|ref|ZP_06319319.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914692|ref|ZP_06322477.1| exonuclease [Staphylococcus aureus subsp. aureus M899]
 gi|282917241|ref|ZP_06324996.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus D139]
 gi|282919729|ref|ZP_06327461.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus C427]
 gi|282925133|ref|ZP_06332793.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus C101]
 gi|282928067|ref|ZP_06335674.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A10102]
 gi|283771044|ref|ZP_06343935.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus H19]
 gi|283958655|ref|ZP_06376101.1| exonuclease [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293507769|ref|ZP_06667611.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510786|ref|ZP_06669488.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus M809]
 gi|293539326|ref|ZP_06672005.1| exonuclease [Staphylococcus aureus subsp. aureus M1015]
 gi|295407274|ref|ZP_06817073.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A8819]
 gi|295428476|ref|ZP_06821103.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296276903|ref|ZP_06859410.1| exonuclease [Staphylococcus aureus subsp. aureus MR1]
 gi|297208922|ref|ZP_06925326.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297246200|ref|ZP_06930051.1| exonuclease [Staphylococcus aureus A8796]
 gi|297590053|ref|ZP_06948693.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|300913021|ref|ZP_07130459.1| exonuclease [Staphylococcus aureus subsp. aureus TCH70]
 gi|13701687|dbj|BAB42980.1| SA1710 [Staphylococcus aureus subsp. aureus N315]
 gi|14247666|dbj|BAB58056.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21205005|dbj|BAB95700.1| MW1835 [Staphylococcus aureus subsp. aureus MW2]
 gi|49242264|emb|CAG40971.1| putative exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49245156|emb|CAG43622.1| putative exonuclease [Staphylococcus aureus subsp. aureus MSSA476]
 gi|82657078|emb|CAI81515.1| probable DNA polymerase III alpha chain [Staphylococcus aureus
           RF122]
 gi|147741435|gb|ABQ49733.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946880|gb|ABR52816.1| Exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156722345|dbj|BAF78762.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253726594|gb|EES95323.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253727180|gb|EES95909.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257271169|gb|EEV03326.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274343|gb|EEV05855.1| exonuclease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257277958|gb|EEV08614.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257280953|gb|EEV11097.1| DNA polymerase subunit III alpha [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257283720|gb|EEV13845.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus M876]
 gi|257787724|gb|EEV26064.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9781]
 gi|257840341|gb|EEV64803.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|257842950|gb|EEV67368.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9719]
 gi|257846758|gb|EEV70773.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9635]
 gi|257849620|gb|EEV73588.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9299]
 gi|257851341|gb|EEV75281.1| DNA polymerase subunit III alpha [Staphylococcus aureus A8115]
 gi|257855832|gb|EEV78756.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A6300]
 gi|257858810|gb|EEV81679.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A6224]
 gi|257864519|gb|EEV87262.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A5937]
 gi|262075837|gb|ACY11810.1| exonuclease [Staphylococcus aureus subsp. aureus ED98]
 gi|282313091|gb|EFB43489.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316367|gb|EFB46744.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus C427]
 gi|282318868|gb|EFB49223.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus D139]
 gi|282321406|gb|EFB51732.1| exonuclease [Staphylococcus aureus subsp. aureus M899]
 gi|282324528|gb|EFB54840.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282326782|gb|EFB57079.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330495|gb|EFB60012.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282590131|gb|EFB95212.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A10102]
 gi|282595081|gb|EFC00048.1| exonuclease [Staphylococcus aureus subsp. aureus C160]
 gi|282763048|gb|EFC03180.1| exonuclease [Staphylococcus aureus A8117]
 gi|283459638|gb|EFC06729.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus H19]
 gi|283471164|emb|CAQ50375.1| exonuclease [Staphylococcus aureus subsp. aureus ST398]
 gi|283789695|gb|EFC28517.1| exonuclease [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285817574|gb|ADC38061.1| DNA polymerase III polC-type [Staphylococcus aureus 04-02981]
 gi|290919861|gb|EFD96930.1| exonuclease [Staphylococcus aureus subsp. aureus M1015]
 gi|291094832|gb|EFE25100.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466417|gb|EFF08941.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus M809]
 gi|294967849|gb|EFG43879.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A8819]
 gi|295127458|gb|EFG57097.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296886412|gb|EFH25341.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297176907|gb|EFH36164.1| exonuclease [Staphylococcus aureus A8796]
 gi|297577181|gb|EFH95895.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|298695233|gb|ADI98455.1| probable DNA polymerase III alpha chain [Staphylococcus aureus
           subsp. aureus ED133]
 gi|300885799|gb|EFK81006.1| exonuclease [Staphylococcus aureus subsp. aureus TCH70]
 gi|312437640|gb|ADQ76711.1| exonuclease [Staphylococcus aureus subsp. aureus TCH60]
 gi|312830266|emb|CBX35108.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129297|gb|EFT85291.1| hypothetical protein CGSSa03_08545 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315193423|gb|EFU23820.1| hypothetical protein CGSSa00_04826 [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|329724805|gb|EGG61309.1| exonuclease [Staphylococcus aureus subsp. aureus 21172]
 gi|329731424|gb|EGG67787.1| exonuclease [Staphylococcus aureus subsp. aureus 21193]
          Length = 184

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V+++D   T  TF   + P     S + +K+HGI  E
Sbjct: 6   FVALDFETA--NGKRTSICSVGMVKVIDSQIT-ETFHTLVNPQDY-FSQQNIKVHGIQPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P+F  +F     F    +   +AHNA FD+  ++  +Q I   P        +  
Sbjct: 62  DVENAPTFDYVFPYMMQFIA--DLPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQ 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +A+R   S R  L  + + Y +       H AL D+   + +  +++     + +
Sbjct: 119 LAKRTVDSYRYGLKHMMEFYQLDF--HGHHDALNDAKACAMITFRLLKNYENLTY 171


>gi|226330322|ref|ZP_03805840.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198]
 gi|225201117|gb|EEG83471.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198]
          Length = 212

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 20/196 (10%)

Query: 5   NKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNS 56
           N+ R    +V D+ET G ++K D ++EI A+ L      + K + T    + P  G    
Sbjct: 12  NRFRGYYPVVIDVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVEPFEGANLE 71

Query: 57  PEALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINA 108
           P AL+  GI     L+   S        +    +         A  +AHNA FD  F+ A
Sbjct: 72  PAALEFTGIDPTNPLRGAVSEYEALHAIFKMVRKGMKDADCNRAIIVAHNANFDHSFVMA 131

Query: 109 ELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +R    ++P  P    DT +++       +  L   C   GI    +  HGAL D++ 
Sbjct: 132 AAERAGLKRNPFHPFATFDTAALSGLVL--GQTILAKACITAGIPFDSKLAHGALYDTNR 189

Query: 167 LSDVYIKMMVGGSQIN 182
            S ++ +++    ++ 
Sbjct: 190 TSLLFCELVNRWKKLG 205


>gi|154488710|ref|ZP_02029559.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis
           L2-32]
 gi|154082847|gb|EDN81892.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis
           L2-32]
          Length = 210

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 11/171 (6%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTGL   K DR IEIG V +          +  +       S  A  +H IT 
Sbjct: 5   FAVVDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLIH---VDRSVGASWVHHITA 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126
             L   P F  I  E  D    +   ++AHN  FD  F+ AE  R+    P+  S ++ T
Sbjct: 62  RDLLHAPDFEGIAHELRDLLAGR--VFVAHNVSFDSRFLLAEYSRMGASIPVHQSTMLCT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           + ++R      R  L+  C  +GI  ++   H AL D+H  + +  +++  
Sbjct: 120 MKLSRSLI--GRGKLSDCCDYFGI--ANEDAHSALSDAHATALLLGRLLEA 166


>gi|88705709|ref|ZP_01103419.1| Ribonuclease T [Congregibacter litoralis KT71]
 gi|88700222|gb|EAQ97331.1| Ribonuclease T [Congregibacter litoralis KT71]
          Length = 210

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 20/200 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-NG 52
           M  K++ R    ++ D+ET G  S  D I+EI A  V + D  +   + T    + P  G
Sbjct: 1   MSMKSRFRGFLPVIVDMETGGFSSSTDAILEIAATVVRMDDTGQIAVHETHSFNVAPFEG 60

Query: 53  RKNSPEALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVG 104
                 AL   GI       E L +K +   +F        +Q    A  + HNA FD G
Sbjct: 61  ANIEQSALDFTGIDPWHPFREALAEKEALGELFQIIRREIRDQECTRAILVGHNAHFDAG 120

Query: 105 FINAELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+NA ++R    ++P  P    DT +++   +   +  L   C   GI   +   H A  
Sbjct: 121 FLNAAVERCEIKRNPFHPFSHFDTATLSGLAY--GQTVLAKSCYEAGIPFDNEQAHSAAY 178

Query: 163 DSHLLSDVYIKMMVGGSQIN 182
           D+   ++++  ++    ++ 
Sbjct: 179 DAERTAELFCGIVNTWQKLG 198


>gi|113970710|ref|YP_734503.1| ribonuclease T [Shewanella sp. MR-4]
 gi|114047939|ref|YP_738489.1| ribonuclease T [Shewanella sp. MR-7]
 gi|122944589|sp|Q0HTX3|RNT_SHESR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|123029558|sp|Q0HHM1|RNT_SHESM RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|113885394|gb|ABI39446.1| RNAse T [Shewanella sp. MR-4]
 gi|113889381|gb|ABI43432.1| RNAse T [Shewanella sp. MR-7]
          Length = 222

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKN 55
           K++ R    +V D+ET G +S+ D ++EI    +++ D      ++T    + P  G   
Sbjct: 11  KHRFRGYFPVVIDVETAGFNSQTDALLEIAVTLLKMDDEGLLGIDKTLHFNIEPFEGANL 70

Query: 56  SPEALKLHGITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFIN 107
            PEAL  +GI     L+   S    F E +              +  +AHNA FD GF++
Sbjct: 71  EPEALAFNGIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVS 130

Query: 108 AELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
             ++R    + P  P    DT ++A          L   C   GI   ++  H AL D+ 
Sbjct: 131 KAIERCDLKRSPFHPFATFDTATLAGLAI--GHTVLAKACIMAGIPFDNKEAHSALYDTE 188

Query: 166 LLSDVYIKMMVGGSQIN 182
             ++++  ++     + 
Sbjct: 189 RTAELFCYIVNRWKHLG 205


>gi|313123658|ref|YP_004033917.1| ATP-dependent DNA helicase ding [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280221|gb|ADQ60940.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 929

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 9/175 (5%)

Query: 9   KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    + DRII+ G   + D  +  +T+   + P+ RK       L GI  
Sbjct: 9   FAVVDLETTGTRKEEGDRIIQFGCAIVKDG-EVVKTYSFMMNPH-RKIPLAVTNLTGIDQ 66

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +  F     +  +    Q+  ++AHN  FD  F+N EL     + L   + +DT+
Sbjct: 67  KMVAGQADFKHYAPKIREIL--QDKVFVAHNVNFDFPFLNYELTNAGFEAL-TCKAVDTV 123

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +A+   P+     L  L     + I H + H A  D++  + + +K++   + +
Sbjct: 124 ELAKIAFPTLPSYKLRDLTA--SLEIKHANPHKADSDAYGTAVLLLKIIDKLASL 176


>gi|119946100|ref|YP_943780.1| ribonuclease T [Psychromonas ingrahamii 37]
 gi|119864704|gb|ABM04181.1| RNAse T [Psychromonas ingrahamii 37]
          Length = 207

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NGRKNSPEALKLH 63
            ++ DIET+GL+++ D I+EI A+     S+            + P  G    P+AL   
Sbjct: 14  PVIIDIETSGLNAQTDAILEIAAILPAMDSQGYLFAAEKIHFNVLPFEGANLDPKALAFT 73

Query: 64  GITD-EFLKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQRIN- 114
           GI     L+         +E +    +         +  +AHNA FD GFIN   +R N 
Sbjct: 74  GIDPFNPLRAAVDERDALTEIFKLVRKHQKQNLCNRSIIVAHNATFDQGFINKATERCNL 133

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT S+A       +  L   C++  I   ++  H AL D+ + +D++  
Sbjct: 134 KRMPFHPFVSFDTASMAGLIL--GQTVLAKACQQASIPYDNKQAHSALYDTEVTADLFFY 191

Query: 174 MMVGGSQIN 182
           M+     + 
Sbjct: 192 MVNKLKALG 200


>gi|90109308|pdb|2F96|A Chain A, 2.1 A Crystal Structure Of Pseudomonas Aeruginosa Rnase T
           (Ribonuclease T)
 gi|90109309|pdb|2F96|B Chain B, 2.1 A Crystal Structure Of Pseudomonas Aeruginosa Rnase T
           (Ribonuclease T)
          Length = 224

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI A  +    K       T+   + P  G    P AL+  
Sbjct: 31  PVVVDVETGGFNSATDALLEIAATTVGXDEKGFLFPEHTYFFRIEPFEGANIEPAALEFT 90

Query: 64  GI-TDEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  D  L+      +  +E +            + A  + HN+ FD+GF+NA + R   
Sbjct: 91  GIKLDHPLRXAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGI 150

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  G    +R  H A  D+   ++++  
Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGXEFDNREAHSARYDTEKTAELFCG 208

Query: 174 MMVGGSQIN 182
           ++    +  
Sbjct: 209 IVNRWKEXG 217


>gi|269216510|ref|ZP_06160364.1| putative ATP-dependent helicase DinG [Slackia exigua ATCC 700122]
 gi|269130039|gb|EEZ61121.1| putative ATP-dependent helicase DinG [Slackia exigua ATCC 700122]
          Length = 1045

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 11/179 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTG    +D + +I A  +         F  F+ P G+    E  +L  I DE 
Sbjct: 58  VVLDTETTGFSQNHDELTQIAAARMKQGRIV-EWFVTFVNP-GKPIPEEVARLTDIHDED 115

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D PS      +   F    ++  +AHNA FD GF           PL  +  ID+L +
Sbjct: 116 VADAPSPDDARIQLAAFVG--DSCIVAHNAAFDKGFCTKSQ---GGAPLSDNLWIDSLDL 170

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           AR   P  + + L  + K +   +S    H A  D   L   Y  M+   +++     +
Sbjct: 171 ARIALPRLKSHRLIDIVKAFDAPVS---THRADADVEALCAAYRIMLAAIAKMPKDLVS 226


>gi|261753605|ref|ZP_05997314.1| DNA polymerase III [Brucella suis bv. 3 str. 686]
 gi|261743358|gb|EEY31284.1| DNA polymerase III [Brucella suis bv. 3 str. 686]
          Length = 233

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 9/218 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++    +    + +SP+A  
Sbjct: 18  IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 76  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +  T+  ARR        L+    + G+      +HGAL D++L + +Y+        +
Sbjct: 134 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARMGH-RHGALEDAYLTAGLYLH----QQGV 188

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                        +  K  P     +  +    R +  
Sbjct: 189 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 226


>gi|269941365|emb|CBI49762.1| putative exonuclease [Staphylococcus aureus subsp. aureus TW20]
          Length = 184

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 9/175 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V+++D   T +TF   + P     S + +K+HGI  E
Sbjct: 6   FVALDFETA--NGKRTSICSVGMVKVIDSQIT-KTFHTLVNPQDY-FSQQNIKIHGIQPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P+F  +F     F    +   +AHNA FD+  ++  +Q I   P        +  
Sbjct: 62  DVENAPTFDYVFPYMMQFIA--DLPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQ 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +A+R   S R  L  + + Y +       H AL D+   + +  +++     + +
Sbjct: 119 LAKRTVDSYRYGLKHMMEFYQLDF--HGHHDALNDAKACAMITFRLLKNYENLTY 171


>gi|224584057|ref|YP_002637855.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224468584|gb|ACN46414.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 257

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 17/197 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        +        +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L+  C   G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGEKAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQINFG 184
           + ++ ++ + GS    G
Sbjct: 191 AVLFCEISIAGSAWAAG 207


>gi|217973787|ref|YP_002358538.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223]
 gi|217498922|gb|ACK47115.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223]
          Length = 300

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 7/164 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D ETTGL +  D+IIEI A++    S  +  F+  + PN  K S +   + GIT+ 
Sbjct: 19  FIALDAETTGLSADVDKIIEIAAIKFDLLSNDHPVFEALINPN-VKVSRKITSITGITNA 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D+ +F+ I  +   F    +   +A+NAKFD GF++ E   +    +  +     L+
Sbjct: 78  MLADQETFTDIAQDLKQFIG--DLPIVAYNAKFDKGFLDTEFANVGI--ILNNHYHCALN 133

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +A+         L ++ +   I ++    H A  D+     V++
Sbjct: 134 LAKAAFNLPNYKLATVAEHCSIPLN--EAHRAKADAVAAGRVFM 175


>gi|168463155|ref|ZP_02697086.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195634173|gb|EDX52525.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 215

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        +        +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L+  C   G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGEKAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|237808201|ref|YP_002892641.1| ribonuclease T [Tolumonas auensis DSM 9187]
 gi|237500462|gb|ACQ93055.1| ribonuclease T [Tolumonas auensis DSM 9187]
          Length = 206

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 79/200 (39%), Gaps = 20/200 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NG 52
           M  K + R    +V D+ET G + K D ++E+ A    ++   +   ++T    + P  G
Sbjct: 1   MCLKERFRGYYPVVIDVETAGFNPKTDALLEMAATTLKMDQDGWLSLDQTIHFHVEPFEG 60

Query: 53  RKNSPEALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVG 104
                 A+  +GI     L+   S      E +              A  +AHNA FD  
Sbjct: 61  ANIEKAAIDFNGIDPFNPLRGAVSEYDALHETFKIIRKGMKAEGCNRAIVVAHNATFDHS 120

Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+ A  +R  + ++P  P    DT ++A       +  L   C+   I   +   H AL 
Sbjct: 121 FMMAASERASLKRNPFHPFATFDTAALAGLAL--GQTVLAKACQTAAIPFDNNEAHSALY 178

Query: 163 DSHLLSDVYIKMMVGGSQIN 182
           D+   ++++  ++     + 
Sbjct: 179 DTERTAELFCYIVNKWKSLG 198


>gi|323187079|gb|EFZ72395.1| ribonuclease T [Escherichia coli RN587/1]
          Length = 215

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +   IF                 +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPNDPDRGAISEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT ++A       +  L+  C+  G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|238022741|ref|ZP_04603167.1| hypothetical protein GCWU000324_02650 [Kingella oralis ATCC 51147]
 gi|237865944|gb|EEP67080.1| hypothetical protein GCWU000324_02650 [Kingella oralis ATCC 51147]
          Length = 464

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 21/224 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R   +  ++ D+ETTG     DRI E+  +       T    Q  + PN    S     L
Sbjct: 18  RTLPIPVVILDLETTGGHFYADRITELAFLHFWQGKIT--AVQQLVQPN-MPISGFVRDL 74

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI+DE L+ +P+F+    +       + +  IAHN++FD  F+  E +R          
Sbjct: 75  TGISDEMLQGQPTFAQFAPQVLPLL--RGSLLIAHNSRFDYTFLRHECRRNGFAFATAG- 131

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            + ++ ++R+ +P   +++L+S+ +R+G+ ++ R  H A+ D   +++           +
Sbjct: 132 -LCSVQLSRKLYPEFFKHNLDSIIERHGLAVASR--HRAMSDVLAVAE----------YL 178

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEH 224
               +        +  + + N  +L  + P    +      DEH
Sbjct: 179 QLALREKGAPLLGQLMRQLANPPMLPANLPAGVFQAASALPDEH 222


>gi|51893409|ref|YP_076100.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857098|dbj|BAD41256.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 390

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 96/228 (42%), Gaps = 17/228 (7%)

Query: 6   KMRK--IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            MR   +V D ETTGL+    RII+IG V + +  +  +T++  L     + S  A++++
Sbjct: 19  DMRYNLVVIDTETTGLEYDQHRIIQIGVVAIKE-QRIVKTWESKLRLIDGEVSAYAMQVN 77

Query: 64  GITD-EFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            +   +   +K P   ++  +  + F        AHN  FD+GF+ AE  R    P    
Sbjct: 78  RLDPSDMRSEKYPHPKAVLRKLQEEFLRPGVLLGAHNLSFDLGFLQAEFARHGL-PQWQG 136

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
             +D++++ R   P     L SL + + + ++    H AL D+   + V + ++    Q 
Sbjct: 137 NFVDSMALGRALLPDLSASLESLARHFRVELTQH--HDALADAVATAHVLLHLLDLAQQR 194

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
                           +  P+ + +         +T+EE+      IQ
Sbjct: 195 GLDPLNLLIERQGRPIRYRPDNARV---------VTQEEILAELAKIQ 233


>gi|283785135|ref|YP_003365000.1| ribonuclease T [Citrobacter rodentium ICC168]
 gi|282948589|emb|CBG88180.1| ribonuclease T [Citrobacter rodentium ICC168]
          Length = 214

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G +++ D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNARTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        +        +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPNNPLRGAVSEYDALHAIFKMVRKGIKDNGCNRAIMVAHNATFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L+  C   G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGTQAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|156934185|ref|YP_001438101.1| ribonuclease T [Cronobacter sakazakii ATCC BAA-894]
 gi|166228564|sp|A7MFC6|RNT_ENTS8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|156532439|gb|ABU77265.1| hypothetical protein ESA_02012 [Cronobacter sakazakii ATCC BAA-894]
          Length = 223

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++EI AV L      +   + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAVTLKMDADGWLTPDETLHFHVEPFEGAILQP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        E N      +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCNRAIMVAHNATFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L   C   G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLAKACIAAGMPFDSTQAHSALYDTEQT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 ALLFCEIVNRWKRLG 205


>gi|120555417|ref|YP_959768.1| ribonuclease T [Marinobacter aquaeolei VT8]
 gi|166228568|sp|A1U3L2|RNT_MARAV RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|120325266|gb|ABM19581.1| RNAse T [Marinobacter aquaeolei VT8]
          Length = 221

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 18/211 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G + + D ++EI AV    +   + +   T    + P  G     
Sbjct: 14  RFRGFLPVVVDVETAGFNPERDALLEIAAVMLTMDEDGWLRRGETHVQQIDPFEGANLEQ 73

Query: 58  EALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
            AL   GI       E + ++   S IFS       E +      + HNA FD  F+ A 
Sbjct: 74  SALDFTGIDPWNPEREAVPEREGLSEIFSPIRKAVKEHDCKRAVLVGHNATFDHNFVFAA 133

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             R  I ++P  P    DT ++A   +      L   CK  GI  S++  H A  D+   
Sbjct: 134 ALRADIKRNPFHPFSTFDTATLAGLAY--GHTVLAQACKLAGIPFSNKEAHSAAYDAEKT 191

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
           +D++  ++    ++  GF        +E ++
Sbjct: 192 ADLFCGIVNRWRELG-GFPPPPIEIAEEPQE 221


>gi|62180023|ref|YP_216440.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161614147|ref|YP_001588112.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|168819183|ref|ZP_02831183.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|198245565|ref|YP_002215700.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|81309702|sp|Q57PK2|RNT_SALCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|62127656|gb|AAX65359.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161363511|gb|ABX67279.1| hypothetical protein SPAB_01887 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197940081|gb|ACH77414.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|205343777|gb|EDZ30541.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320086089|emb|CBY95863.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|322714491|gb|EFZ06062.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|326623447|gb|EGE29792.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 215

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        +        +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L+  C   G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGEKAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|120599226|ref|YP_963800.1| ribonuclease T [Shewanella sp. W3-18-1]
 gi|166200022|sp|A1RKQ1|RNT_SHESW RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|120559319|gb|ABM25246.1| RNAse T [Shewanella sp. W3-18-1]
 gi|319426004|gb|ADV54078.1| ribonuclease T [Shewanella putrefaciens 200]
          Length = 223

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKN 55
           K++ R    +V D+ET G +S+ D ++EI    +++ D      ++T    + P  G   
Sbjct: 11  KHRFRGYFPVVIDVETAGFNSQTDALLEIAVTLLKMDDEGMLGIDKTLHFHIEPFEGANL 70

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
            P AL  +GI  +  L+   S    F + +          +      +AHNA FD GF++
Sbjct: 71  EPAALAFNGIDPNNPLRGAVSEKEAFLDIFKAVKKAQKAADCHRCIIVAHNAAFDHGFVS 130

Query: 108 AELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
             ++R    + P  P    DT ++A          L   C   GI   ++  H AL D+ 
Sbjct: 131 KAIERCDLKRSPFHPFATFDTATLAGLAI--GHTVLAKACMMAGIPFDNKEAHSALYDTE 188

Query: 166 LLSDVYIKMMVGGSQIN 182
             ++++  ++    Q+ 
Sbjct: 189 RTAELFCYIVNRWKQLG 205


>gi|309803980|ref|ZP_07698062.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus iners
           LactinV 11V1-d]
 gi|308163899|gb|EFO66164.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus iners
           LactinV 11V1-d]
          Length = 933

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K +DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +    +N  ++AHN  FD+ F+N EL      P D  + IDT+
Sbjct: 69  QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFD-GKAIDTV 125

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +A+   P+     L  +     I   H + H A  D+ + + + +K++
Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKII 172


>gi|148986116|ref|ZP_01819102.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP3-BS71]
 gi|149004079|ref|ZP_01828884.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69]
 gi|147757891|gb|EDK64900.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69]
 gi|147921830|gb|EDK72957.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP3-BS71]
 gi|301799167|emb|CBW31680.1| unnamed protein product [Streptococcus pneumoniae OXC141]
          Length = 307

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 85/222 (38%), Gaps = 20/222 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ET   +     +  IG V+  D +  + TF   + P    +      +HGIT E
Sbjct: 5   YVALDVETA--NDFRGSVCSIGLVKFKDGNIVD-TFYTLINPEEEFDDFNIF-IHGITPE 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +     DF        +AH A+FD+G +    Q+   D  D    I +  
Sbjct: 61  DVLDSPTFPEVRKSIVDFIGLD--IVVAHFAQFDMGALKDVYQKYELD-FDNIEYICSYR 117

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P      L  L K   I + H   H AL D+     +   ++   S  +F   T
Sbjct: 118 LAKVALPGQLNYKLKRLAKNLNIELDH---HNALSDARASGLILEYLL---STNSFSDLT 171

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP------LFTRITKEELDE 223
              + ++  K  +      KR K       L  + T+EE   
Sbjct: 172 AFLKEYRYNKTGLLGQYGFKRKKGYQYKENLIYQPTEEEKAA 213


>gi|110799207|ref|YP_694883.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
 gi|110673854|gb|ABG82841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
          Length = 870

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
              K   IVFD+E+TG+D   D II+I A++L    +    F+ FL    +K   ++  +
Sbjct: 498 EFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKN--KKPVKDSYYV 555

Query: 63  HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           HG +DE L+        +  EF ++   +++  + HN ++D+  + +EL+R N       
Sbjct: 556 HGFSDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFK 613

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              DTL I RR +P +    L +L K Y     H+  H A+ D     ++ ++ +
Sbjct: 614 TFYDTLDIYRRFYPGNINYKLENLSKVY--DTKHKPSHDAMDDIIATGELLVRAI 666


>gi|146292700|ref|YP_001183124.1| ribonuclease T [Shewanella putrefaciens CN-32]
 gi|166200020|sp|A4Y5U2|RNT_SHEPC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|145564390|gb|ABP75325.1| RNAse T [Shewanella putrefaciens CN-32]
          Length = 224

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKN 55
           K++ R    +V D+ET G +S+ D ++EI    +++ D      ++T    + P  G   
Sbjct: 11  KHRFRGYFPVVIDVETAGFNSQTDALLEIAVTLLKMDDEGMLGIDKTLHFHIEPFEGANL 70

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
            P AL  +GI  +  L+   S    F + +          +      +AHNA FD GF++
Sbjct: 71  EPAALAFNGIDPNNPLRGAVSEKEAFLDIFKAVKKAQKAADCHRCIIVAHNAAFDHGFVS 130

Query: 108 AELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
             ++R    + P  P    DT ++A          L   C   GI   ++  H AL D+ 
Sbjct: 131 KAIERCDLKRSPFHPFATFDTATLAGLAI--GHTVLAKACMMAGIPFDNKEAHSALYDTE 188

Query: 166 LLSDVYIKMMVGGSQIN 182
             ++++  ++    Q+ 
Sbjct: 189 RTAELFCYIVNRWKQLG 205


>gi|167041229|gb|ABZ05986.1| putative exonuclease [uncultured marine microorganism
           HF4000_001N02]
          Length = 299

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R + FD+ETTGLD++ DRI++   +   +D S  N      + P  R     A ++HGI+
Sbjct: 38  RVLGFDLETTGLDARKDRIVQYALIGSDVDGSHIN--LASLVDP-RRGIPTAASRIHGIS 94

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIID 125
           +E ++   SF +      +    ++A  + HN + FD  F+  E  R   +   P  I+D
Sbjct: 95  EEDVRGVGSFETHVGAISELI--EDAVIVGHNISNFDWRFLELECMRAGVETPIPRAIVD 152

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T S+AR+     R  L  LC RY I+I     H A  D+     +   MM
Sbjct: 153 TYSLARKLRIPGRRTLGVLCARYDISI--GRAHSADADAGASLLLLWSMM 200


>gi|288921215|ref|ZP_06415500.1| stress protein [Frankia sp. EUN1f]
 gi|288347369|gb|EFC81661.1| stress protein [Frankia sp. EUN1f]
          Length = 622

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 10/192 (5%)

Query: 15  ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP 74
           ET+GL +  DRI+ I  V++         +   L P      P  + +HG+T E L   P
Sbjct: 2   ETSGLAADRDRILSIAVVQVGADGAVGERWTTLLDPGC---DPGPVHIHGLTRELLAGSP 58

Query: 75  SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK- 133
           +F+ +  E       +    +AHNA FD  F+ AE  R  ++ L   R + +  +ARR  
Sbjct: 59  TFADVVDELASRLAGR--VMVAHNASFDWRFLTAEAVRAGRE-LPTERRMCSCVLARRLD 115

Query: 134 HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK-TNEDRF 192
            P     L ++   + +      +H AL D+ ++++V  +M+    + +     T  DR 
Sbjct: 116 LPVPDFRLATIADFWAVPFE--RQHDALADAMVVAEVLPRMLALAGEQDLELPITAGDRT 173

Query: 193 FKEEKKTVPNIS 204
              +    P   
Sbjct: 174 PTPQPARAPRAR 185


>gi|227890751|ref|ZP_04008556.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           salivarius ATCC 11741]
 gi|227867160|gb|EEJ74581.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           salivarius ATCC 11741]
          Length = 937

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 11/176 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MI++      V D+ETTG      D+II+    + +  +K    F   + P G     E 
Sbjct: 9   MIKERI--YAVVDLETTGPKQDGSDKIIQFSC-DFVQSNKIVNHFSTLINP-GMPIPAEV 64

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            KL GI D+ ++  P F  +    +     QN  ++AHN  FD  F+++EL+R     L+
Sbjct: 65  KKLTGIKDKDVRYAPYFDEVAGTIYAML--QNTTFVAHNVNFDYSFLSSELERAGYPELE 122

Query: 120 PSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              ++DT+ + +  +P+     L  + K   + +SH   H A  D+   +++ I +
Sbjct: 123 L-PMMDTVQLTQIIYPTLVSYRLIDVSKY--LQLSHIHPHKADSDTKATAELLINL 175


>gi|57242277|ref|ZP_00370216.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis RM3195]
 gi|57016957|gb|EAL53739.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis RM3195]
          Length = 260

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/194 (27%), Positives = 96/194 (49%), Gaps = 16/194 (8%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            R +K++     + DIE+TG    + +I+EIGAV++ ++ + +R F+ F+  +  +    
Sbjct: 62  TRTSKIKEQVFCIVDIESTGG-INSGQILEIGAVKIQNHKELDR-FESFVKVD--EIPLN 117

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             KL GI    +KD P+ + +   F  F N  ++ ++AHN KFD  FI+  L       L
Sbjct: 118 ITKLTGIELNMVKDAPNLTRVLEAFRLFLN--DSVFVAHNVKFDYNFISKSLYECGFGIL 175

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +R I T+  A+    SS   L++L +   I   H   H AL D+   ++++   +   
Sbjct: 176 L-NRKICTVDFAQCCIQSSHYKLDTLKEILKIESIH---HRALNDALAAAEIFKYCL--- 228

Query: 179 SQINFGFKTNEDRF 192
           S++    KT E+  
Sbjct: 229 SKLPPHIKTTEELI 242


>gi|319955911|ref|YP_004167174.1| DNA polymerase iii, epsilon subunit [Nitratifractor salsuginis DSM
           16511]
 gi|319418315|gb|ADV45425.1| DNA polymerase III, epsilon subunit [Nitratifractor salsuginis DSM
           16511]
          Length = 272

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 8/172 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
                    + DIET G      ++IEIGAV L +    +R  + F+           +K
Sbjct: 66  TPWQMQEYCIIDIETNGSKPGRSQVIEIGAVMLKEGKIIDR-LETFVA--CAYLPEHIIK 122

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GI    L + PS     ++  +F    +A + AHNA FD GF+NA  QR    P+  +
Sbjct: 123 LTGIEPTDLAEAPSRKEALTQLRNFMG--DAVFTAHNAGFDHGFLNASFQRFGLGPIG-N 179

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++ T+ +ARR   S R  L  L +   + +  ++ H A  D+   S V +K
Sbjct: 180 PVLCTIDLARRTFESERYGLAYLNE--SLDLGMQAHHRAYNDALAASKVLMK 229


>gi|257065507|ref|YP_003145179.1| exonuclease, DNA polymerase III, epsilon subunit family [Slackia
           heliotrinireducens DSM 20476]
 gi|256793160|gb|ACV23830.1| exonuclease, DNA polymerase III, epsilon subunit family [Slackia
           heliotrinireducens DSM 20476]
          Length = 986

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 14/180 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+ +N    +V D ETTGL   +D + +I A  +     T+  F  F+ P G+    E +
Sbjct: 1   MLDRN---LVVLDTETTGLSYNHDELTQIAAARMECGEITD-WFVTFVNP-GKPIPDEIV 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L  I DE + D P+     +   +F    +A  +AHNA FD  F          + L+ 
Sbjct: 56  RLTNIHDEDVVDAPTPDEARALLAEFIG--DAYVVAHNADFDKHFCTKSES---GECLNR 110

Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +  +D+L++AR   P  + + L  L   +   IS    H A  D   L  VY  ++   +
Sbjct: 111 NIWVDSLALARIALPRMKSHRLIDLVHAFDAPIS---THRADADVEALCAVYRILLSAVA 167


>gi|157145913|ref|YP_001453232.1| ribonuclease T [Citrobacter koseri ATCC BAA-895]
 gi|166228562|sp|A8AH33|RNT_CITK8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|157083118|gb|ABV12796.1| hypothetical protein CKO_01664 [Citrobacter koseri ATCC BAA-895]
          Length = 215

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++E+ A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEVAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        +        +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPSNPLRGAVSEYDALHAIFKMVRKGIKDSGCNRAIMVAHNATFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L+  C   G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGTQAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|294140554|ref|YP_003556532.1| ribonuclease T [Shewanella violacea DSS12]
 gi|293327023|dbj|BAJ01754.1| ribonuclease T [Shewanella violacea DSS12]
          Length = 223

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA-VELLDYSKT---NRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S+ D ++EI   +  +D       ++T    + P  G    P+AL  +
Sbjct: 19  PVVIDVETAGFNSQTDALLEIAVTMLKMDDEGILSLDKTLHYHIEPFEGANLEPDALAFN 78

Query: 64  GITDE-----FLKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
           GI         + +K +F  IF E            +  +AHNA FD GF++  ++R   
Sbjct: 79  GIDPTNPLRGAVSEKEAFLEIFKEVKKAQKAVGCHRSIIVAHNAAFDHGFVSKAIERCAL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++          L   C   GI   +   H AL D+   ++++  
Sbjct: 139 KRTPFHPFATFDTAALSGLAL--GHTVLAKACSIAGIDFDNNEAHSALYDTERTAELFCH 196

Query: 174 MMVGGSQIN 182
           ++     + 
Sbjct: 197 IVNKWKALG 205


>gi|194445493|ref|YP_002040683.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194404156|gb|ACF64378.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 215

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        +        +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L+  C   G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGEKAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|83757883|gb|ABC45996.1| exonuclease family [Salinibacter ruber DSM 13855]
          Length = 538

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 11/157 (7%)

Query: 28  EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87
           EIGAV++ D S  +R FQ  + P  +       K+ GIT   + + P    +  ++  F 
Sbjct: 2   EIGAVKVRDGSVVDR-FQQLVNPQ-QSVPGRITKMTGITTGMVFEAPPADEVLPDYRAFL 59

Query: 88  NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCK 146
              +   +AHN  FD  F++AELQR+  + L P+  + T+ +ARR  P   +  L+ L +
Sbjct: 60  G--DGILVAHNVSFDGSFLDAELQRMGDETL-PNETLCTVRLARRLLPGLDSKGLSRLAQ 116

Query: 147 RYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            Y I +  R  H AL D+   S V  + +   SQ+ F
Sbjct: 117 FYDIDVEGR--HRALGDAEATSVVLRRFV---SQLAF 148


>gi|145595801|ref|YP_001160098.1| hypothetical protein Strop_3286 [Salinispora tropica CNB-440]
 gi|145305138|gb|ABP55720.1| DNA polymerase III, epsilon subunit [Salinispora tropica CNB-440]
          Length = 607

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 60/255 (23%), Positives = 99/255 (38%), Gaps = 24/255 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG       I EIGAV++    +        + P G    P    L GIT  
Sbjct: 54  FVVVDLETTGGTPDGGGITEIGAVKVRGGEQLG-VLATLVNP-GTPVPPFVTVLTGITQS 111

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P  + +   F +F    +A  +AHNA +DVGF+ A           P R++DT +
Sbjct: 112 MLLPAPPITEVLPSFLEFL-PPDAVLVAHNAPYDVGFLKAACAAHGYRWPSP-RVLDTAA 169

Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183
           +ARR           L +L   +    + R  H AL D+    DV   ++  +GG +++ 
Sbjct: 170 LARRVLTRDEVPNRRLGTLAAYF--RTATRPTHRALDDALATVDVLHGLISRLGGHRVHT 227

Query: 184 GFKTNE-----------DRFFKEEKKTVPNISLLKR--DKPLFTRITKEELDEHDKTIQT 230
             +  E            R   E     P + L +   ++PL+   + +           
Sbjct: 228 IGEAIEFARAVTPTQRRKRHLAEGLPHSPGVYLFRGADNRPLYVGTSIDIATRVRSYFTA 287

Query: 231 LGKNAIWDRYISSNQ 245
             K A     +++ +
Sbjct: 288 AEKRARISEMLAAAE 302


>gi|104774002|ref|YP_618982.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423083|emb|CAI97804.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|325125707|gb|ADY85037.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 930

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 9/175 (5%)

Query: 9   KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG    + DRII+ G   + D  +  +T+   + P+ RK       L GI  
Sbjct: 10  FAVVDLETTGTRKEEGDRIIQFGCAIVKDG-EVVKTYSFMMNPH-RKIPLSVTNLTGIDQ 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +  +  F     +  +    Q+  ++AHN  FD  F+N EL     + L   + +DT+
Sbjct: 68  KMVAGQADFKHYAPKIREIL--QDTVFVAHNVNFDFPFLNYELTNAGFEAL-TCKAVDTV 124

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +A+   P+     L  L     + I H + H A  D++  + + +K++   + +
Sbjct: 125 ELAKIAFPTLPSYKLRDLTA--SLEIKHANPHKADSDAYGTAVLLLKIIDKLASL 177


>gi|296273686|ref|YP_003656317.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM
           7299]
 gi|296097860|gb|ADG93810.1| DNA polymerase III, epsilon subunit [Arcobacter nitrofigilis DSM
           7299]
          Length = 279

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 85/173 (49%), Gaps = 11/173 (6%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++N+++     + DIET G +    ++IEIGAV+L +    + +++  +    +   P 
Sbjct: 69  TKENQIKDQVFCIVDIETNGSNVNKGQVIEIGAVKLKNGEIID-SYESLV--YAKDVPPY 125

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             ++  IT   LKD P   ++  EF  F   ++  ++AH+ KFD  FI+   ++ N   L
Sbjct: 126 IQEVTNITPSMLKDAPVLKTVLEEFKIFL--EDDVFVAHDIKFDYRFISESFKKYNLGEL 183

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +R + T+ +++R   + R  L+ L     I I   ++H A  D+   + + 
Sbjct: 184 H-NRKLCTIDLSKRTIEAQRYGLDFLKDLLHIDID--TQHRAYSDALSTTYIL 233


>gi|163751265|ref|ZP_02158493.1| ribonuclease T [Shewanella benthica KT99]
 gi|161328979|gb|EDQ00053.1| ribonuclease T [Shewanella benthica KT99]
          Length = 225

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 78/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA-VELLDYSKT---NRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G + + D ++EI   +  +D       ++T    + P  G    P+AL  +
Sbjct: 19  PVVIDVETAGFNCQTDALLEIAVTMLKMDDEGILSLDKTLHYHIEPFEGANLEPDALAFN 78

Query: 64  GITDE-----FLKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
           GI         + +K +F  IF E            +  +AHNA FD GF++  ++R   
Sbjct: 79  GIDPTNPLRGAVSEKEAFLEIFKEVKKAQKAVGCHRSIIVAHNAAFDHGFVSKAIERCAL 138

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++          L   C   GI   +   H AL D+   ++++  
Sbjct: 139 KRTPFHPFATFDTAALSGLAL--GHTVLAKACSIAGIDFDNSEAHSALYDTERTAELFCH 196

Query: 174 MMVGGSQIN 182
           ++     + 
Sbjct: 197 IVNKWKTLG 205


>gi|168184157|ref|ZP_02618821.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf]
 gi|182672739|gb|EDT84700.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf]
          Length = 855

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/176 (27%), Positives = 94/176 (53%), Gaps = 8/176 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +    +VFD+E+TG+++  D I++I  +++    +   +FQ FL P  +K+  ++  +
Sbjct: 489 ELDNENVVVFDVESTGINTTEDEIVQIAGIKINSKGEAIESFQRFLNP--KKSVGDSYLV 546

Query: 63  HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           HG +D+FLK+   +   +  +F  F   ++   + HN  FD+  +N+EL+R++ +     
Sbjct: 547 HGFSDQFLKENGENKKVVLKDFLKFI--KDTVIVGHNVTFDISILNSELERLSLEKASFK 604

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
              DTL IARR +PS + + L +L K +      +S H A+ D     D+ + M+ 
Sbjct: 605 TYYDTLDIARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDILMVMLR 658


>gi|167462331|ref|ZP_02327420.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 816

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 9/175 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +    M+  V D ETT   S  D II++G V + ++  T+R +   + P G +       
Sbjct: 1   METTGMKFAVLDFETT-GTSTTDTIIQVGLVIIDEFDITDR-YTSLVNP-GVRIPSSITS 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +++ PS   + ++ +   +  +   +AH+A FD  F+   L +    P    
Sbjct: 58  LTGITDEMVENAPSVEKVMADLYPLLS--DCVLVAHHASFDHAFLQRSLTKAGYPPF-TG 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R++DT+   R   PS     L  +C  +GI   H + H A  D+ + ++++I++M
Sbjct: 115 RVLDTIDALRVAFPSLGSFQLGHVCSLFGIE--HENPHQANCDAQVTAELWIRIM 167


>gi|70732717|ref|YP_262480.1| exonuclease [Pseudomonas fluorescens Pf-5]
 gi|68347016|gb|AAY94622.1| exonuclease [Pseudomonas fluorescens Pf-5]
          Length = 203

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 10/194 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V L       R +Q  +   G +      +L GI+
Sbjct: 3   RIAVIDFETTGISPSSSCRATEIAVVILEQGRIVER-YQSLMN-AGVRVPAFIEQLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  L+  P    + +E  +F        +AHNA FD  F + EL RI +  L       +
Sbjct: 61  NAMLRSAPPAEQVMNEVNEFVGI--TPLLAHNAAFDQKFWDFELGRIKRTRLQNFA--CS 116

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           L +ARR  P +  + L +L    G+       H A+ D+ + +++ +  + G  +   G 
Sbjct: 117 LLLARRLMPAAPNHKLGTLTSFAGLP-HTGQAHRAMADAEMAANL-VAHLAGELRHKHGL 174

Query: 186 KTNEDRFFKEEKKT 199
           +     F  + +K 
Sbjct: 175 RELSHDFLCKLQKV 188


>gi|16760479|ref|NP_456096.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16764782|ref|NP_460397.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29141761|ref|NP_805103.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56413597|ref|YP_150672.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|167551596|ref|ZP_02345350.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167994263|ref|ZP_02575355.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168229807|ref|ZP_02654865.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168235505|ref|ZP_02660563.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168240948|ref|ZP_02665880.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168264727|ref|ZP_02686700.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|194451220|ref|YP_002045472.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194469134|ref|ZP_03075118.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194737431|ref|YP_002114446.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197251543|ref|YP_002146611.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197264202|ref|ZP_03164276.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197362521|ref|YP_002142158.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|200389402|ref|ZP_03216013.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|213426003|ref|ZP_03358753.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213586461|ref|ZP_03368287.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
 gi|213609934|ref|ZP_03369760.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|213649691|ref|ZP_03379744.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|213855187|ref|ZP_03383427.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|238913165|ref|ZP_04657002.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289805704|ref|ZP_06536333.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
 gi|289824912|ref|ZP_06544333.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|54039259|sp|P66685|RNT_SALTI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|54042002|sp|P66684|RNT_SALTY RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|81821446|sp|Q5PH07|RNT_SALPA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|25356018|pir||AD0695 ribonuclease T [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16419954|gb|AAL20356.1| RNase T [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16502775|emb|CAD01933.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29137389|gb|AAO68952.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56127854|gb|AAV77360.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|194409524|gb|ACF69743.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194455498|gb|EDX44337.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194712933|gb|ACF92154.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197093998|emb|CAR59494.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197215246|gb|ACH52643.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197242457|gb|EDY25077.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197291124|gb|EDY30477.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|199601847|gb|EDZ00393.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205323544|gb|EDZ11383.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205327828|gb|EDZ14592.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205335262|gb|EDZ22026.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205339447|gb|EDZ26211.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205346854|gb|EDZ33485.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|261246638|emb|CBG24448.1| Exoribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993323|gb|ACY88208.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301157967|emb|CBW17462.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912417|dbj|BAJ36391.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224052|gb|EFX49115.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323129704|gb|ADX17134.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332988319|gb|AEF07302.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 215

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        +        +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L+  C   G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGEKAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|256822949|ref|YP_003146912.1| ribonuclease T [Kangiella koreensis DSM 16069]
 gi|256796488|gb|ACV27144.1| ribonuclease T [Kangiella koreensis DSM 16069]
          Length = 200

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 20/196 (10%)

Query: 3   RKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRK 54
            K + R    ++ D+ET G ++  D ++E+ AV          +   ++   + P  G  
Sbjct: 6   MKERFRGFFPVIIDVETGGFNAATDALLELAAVTTGFNEQGKLEIKNSYHFNVEPFEGAN 65

Query: 55  NSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFI 106
              +AL   GI  D  L+   S        +     +           + HN+ FD+ F+
Sbjct: 66  IEQKALDFTGIDPDNPLRGAISEHKALKSLFKDLRTEQKDAECNRCVLVGHNSWFDLSFL 125

Query: 107 NAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           NA  +R  I ++P  P    DT S++          L   C   GI  S +  H AL D+
Sbjct: 126 NAASERVDIKRNPFHPFTSFDTASLSALML--GHTVLAQACDLAGIEFSQKEAHSALYDA 183

Query: 165 HLLSDVYIKMMVGGSQ 180
              ++++  ++   +Q
Sbjct: 184 TKTAELFCLLVNRANQ 199


>gi|77460741|ref|YP_350248.1| ribonuclease T [Pseudomonas fluorescens Pf0-1]
 gi|123603449|sp|Q3K7J7|RNT_PSEPF RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|77384744|gb|ABA76257.1| ribonuclease T [Pseudomonas fluorescens Pf0-1]
          Length = 224

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI A    ++   +   + T+   + P  G    P AL+  
Sbjct: 31  PVVVDVETGGFNSATDALLEIAATTIAMDEKGFVYPDHTYFFRVEPFEGANVEPAALEFT 90

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI  D  L+   S  +  ++              + A  + HN+ FD+GF+NA + R  +
Sbjct: 91  GIKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDM 150

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+   I    R  H A  D+   ++++  
Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAADIDFDGREAHSARYDTEKTAELFCG 208

Query: 174 MMVGGSQIN 182
           ++    Q+ 
Sbjct: 209 IVNRWKQMG 217


>gi|308190354|ref|YP_003923285.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
 gi|307625096|gb|ADN69401.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
          Length = 1461

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 6/169 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FDIETTGL  +   IIE G++ +    K  R  Q F+        P    L GIT+ 
Sbjct: 426 YVSFDIETTGLCPRFAEIIEYGSLPIHSNMKYGRKTQFFIKCQ-EPIKPFTENLTGITNA 484

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            + K          + ++  N + A  +AHNA+FD  F+  + ++   +      +IDTL
Sbjct: 485 MIEKSGLELKEALQKIYNDLNGKIA--LAHNARFDFNFLKEKFRQAKIE-FPNVTVIDTL 541

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++R   P   ++ L  +  R G+       H    D+ +L++V++ +M
Sbjct: 542 IVSRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDYDAKVLAEVWVALM 590


>gi|238898583|ref|YP_002924264.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466342|gb|ACQ68116.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 221

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G ++K D ++EI AV    +   +    ++    + P +G    PEAL  +
Sbjct: 26  PVVIDVETAGFNTKTDALLEIAAVTLFMDKEGWLHIEQSMHFHVEPFSGANFEPEALAFN 85

Query: 64  GITDE-FLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAELQRINK 115
           GI     L+D  S   +  + + +          + A  +AHNA FD  F+    +R   
Sbjct: 86  GIDPHSPLRDAKSEFEVLKKIFKWVQKGMKEQYCKRAIIVAHNAGFDHAFVMNAAKRTGL 145

Query: 116 --DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             +P  P    DT +++       +  L   C   G+       H AL D+   + ++ +
Sbjct: 146 KQNPFHPFSTFDTAALSGLAL--GQTVLAKACLTAGLNFDMSRAHSALYDTQQTARLFCE 203

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 204 LVNRWKRLG 212


>gi|209695329|ref|YP_002263258.1| ribonuclease T [Aliivibrio salmonicida LFI1238]
 gi|208009281|emb|CAQ79547.1| ribonuclease T [Aliivibrio salmonicida LFI1238]
          Length = 221

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 18/190 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +SK D ++EI AV L      Y K   T    + P  G     EAL   
Sbjct: 19  PVVIDVETAGFNSKTDALLEICAVTLAMDDEGYLKPATTIHFHVTPFEGANLEQEALDFI 78

Query: 64  GITDEF--LKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQR-- 112
           GI D F  L+   +      E +          + + A  +AHNA FD  F+    +R  
Sbjct: 79  GIRDPFSPLRGAVTEDVALKEIFKLIRKEQKQHDCRRAIMVAHNANFDHSFVMEAAERTK 138

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + + P  P    DT +I+       +  L   CK  G+    +  H AL D+   ++++ 
Sbjct: 139 LKRIPFHPFCTFDTAAISGLAL--GQTVLAKACKTAGMDFDGKEAHSALYDTEKTAELFC 196

Query: 173 KMMVGGSQIN 182
            ++     + 
Sbjct: 197 HIVNKWKDLG 206


>gi|300361735|ref|ZP_07057912.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           gasseri JV-V03]
 gi|300354354|gb|EFJ70225.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           gasseri JV-V03]
          Length = 937

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 9/162 (5%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   ++ D II+ G   ++   K  +T+   + P+ R+       L  I++
Sbjct: 10  FAVVDLETTGTQRNQGDHIIQFGC-AIIKKRKVVKTYSFLINPH-REIPQAVENLTHISN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +     F     +       +N  ++AHN  FD+ F+N EL     +PL   + IDT+
Sbjct: 68  RDVAQARDFKYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAIDTV 124

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            +A+   P+     L  L  R  I   H + H A  D+ + +
Sbjct: 125 ELAQIAFPTFPSYKLRDLTARLKIK--HLNPHRADSDALVTA 164


>gi|326794723|ref|YP_004312543.1| ribonuclease T [Marinomonas mediterranea MMB-1]
 gi|326545487|gb|ADZ90707.1| Ribonuclease T [Marinomonas mediterranea MMB-1]
          Length = 224

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 20/215 (9%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGA-VELLDYSK---TNRTFQVFLCP-NGRKN 55
           K++ R    +V D+ET G + K D ++EI A +  +D +     + T +  + P  G   
Sbjct: 7   KDRFRGFLPVVIDVETAGFNEKTDALLEIAASILRMDENGDLYIHETLEYIVQPFEGANL 66

Query: 56  SPEALKLHGITD-----EFLKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFIN 107
              AL   GI         + +  + + + S+          + A  + HN+ FD GF+N
Sbjct: 67  EKAALDFTGIDPFDPDRNDMPESEALTQMLSKVRKELKSVGCKRAILVGHNSSFDHGFLN 126

Query: 108 AELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A ++R    ++P  P    DT S+A   +   +  L   C+   I  S+   H A  D+ 
Sbjct: 127 AAIERCSIKRNPFHPFSSFDTASLAGLAY--GQTVLAKACEAANIPFSNSQAHSAKYDTE 184

Query: 166 LLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200
             ++++ +++    Q+    + +E +   E  +++
Sbjct: 185 KTAELFCEIVNRWKQMGGWSQFSESQESAETMESL 219


>gi|330502360|ref|YP_004379229.1| ribonuclease T [Pseudomonas mendocina NK-01]
 gi|328916646|gb|AEB57477.1| ribonuclease T [Pseudomonas mendocina NK-01]
          Length = 224

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI A    ++   +   + T    + P  G      AL+  
Sbjct: 31  PVVVDVETGGFNSATDALLEIAATTIAMDESGFLYPDHTHFFRIEPFEGANIEQAALEFT 90

Query: 64  GI-TDEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  D  L+   S      E +            + A  + HN+ FD+GF+NA + R   
Sbjct: 91  GIKLDHPLRMAVSEEHALGEIFKGLRKSIKSAGCKRAILVGHNSSFDLGFLNAAVARCGI 150

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  GI    +  H A  D+   ++++  
Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIEFDGKEAHSARYDTEKTAELFCG 208

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 209 IVNRWKEMG 217


>gi|169342971|ref|ZP_02863999.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens C str. JGS1495]
 gi|169298880|gb|EDS80954.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens C str. JGS1495]
          Length = 876

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 8/172 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K   IVFD+E+TG+D   D II+I A++L    +    F+ FL    +K   ++  +HG 
Sbjct: 507 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKN--KKPVKDSYYVHGF 564

Query: 66  TDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +DE L+        +  EF ++   +++  + HN ++D+  + +EL+R N          
Sbjct: 565 SDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFY 622

Query: 125 DTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DTL I RR +P +    L +L K Y     H+  H A+ D     ++ ++ +
Sbjct: 623 DTLDIYRRFYPGNINYKLENLSKVY--DTKHKPSHDAMDDIIATGELLVRAI 672


>gi|161503473|ref|YP_001570585.1| ribonuclease T [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|204927787|ref|ZP_03218988.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205352852|ref|YP_002226653.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207857062|ref|YP_002243713.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|160864820|gb|ABX21443.1| hypothetical protein SARI_01547 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|204323129|gb|EDZ08325.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205272633|emb|CAR37543.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206708865|emb|CAR33195.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326627923|gb|EGE34266.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 215

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQP 72

Query: 58  EALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109
           EAL  +GI     L+   S        +              A  +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L+  C   G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGEKAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|90022074|ref|YP_527901.1| ribonuclease T [Saccharophagus degradans 2-40]
 gi|89951674|gb|ABD81689.1| RNAse T [Saccharophagus degradans 2-40]
          Length = 231

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 84/215 (39%), Gaps = 22/215 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSP 57
           R      ++ D+ET G +S  D ++EI AV L            TF   + P  G     
Sbjct: 19  RFRGFLPVIVDVETGGFNSHTDALLEIAAVTLRMDEDGVLHRHETFDFHVDPFEGANIEQ 78

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
            AL   GI  +      + +  + + IF        E        +AHNA FD+GF+NA 
Sbjct: 79  SALDFTGIDLDSDDRCAVPEDIAINEIFRSVRKAVKENGCNRAVMVAHNAHFDLGFVNAA 138

Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             R    ++P  P    DT +++          L   C+   I  S+R  H A  D+   
Sbjct: 139 SNRCDVKRNPFHPFSCFDTATLSGLAF--GHTVLARACQLAKIEFSNREAHSAAYDAEKT 196

Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKEEK 197
           +D++  ++     +GG  +  G     D    EE+
Sbjct: 197 ADLFCTIVNRWKDLGGWPLPVGDNLAMDETSLEEE 231


>gi|300214468|gb|ADJ78884.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius CECT
           5713]
          Length = 929

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 11/176 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MI++      V D+ETTG      D+II+    + +  +K    F   + P G     E 
Sbjct: 1   MIKERI--YAVVDLETTGPKQDGSDKIIQFSC-DFVQSNKIVNHFSTLINP-GMPIPAEV 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            KL GI ++ ++  P F  +    +     QN  ++AHN  FD  F+++EL+R     L+
Sbjct: 57  KKLTGIKNKDVRYAPYFDEVAGTIYAML--QNTTFVAHNVNFDYSFLSSELERAGYPELE 114

Query: 120 PSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              ++DT+ + +  +P+     L  + K   + +SH   H A  D+   +++ I +
Sbjct: 115 L-PMMDTVQLTQIIYPTLVSYRLIDVSKY--LQLSHIHPHKADSDTKATAELLINL 167


>gi|302875356|ref|YP_003843989.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
 gi|307688937|ref|ZP_07631383.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
 gi|302578213|gb|ADL52225.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
          Length = 867

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 8/169 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+E+TG D   D II+I A+ +    +   +F+ FL P  +K+   +  +HG +DE
Sbjct: 501 IIVFDVESTGTDVTEDEIIQIAAIRINRNGEVIDSFERFLKP--KKSVKNSEHIHGFSDE 558

Query: 69  FLKDKPSFSS-IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           FLK+K      +  EF  F   +NA  + HN ++D+  +++E+ R+N          DTL
Sbjct: 559 FLKEKGEDKETVIKEFLRF--SENAVIVGHNVQYDINILSSEIHRLNLGKSKFLAFYDTL 616

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            I RR +P+   + LN+L   +     +   H A+ D     D+ I+ +
Sbjct: 617 DIYRRFYPNLVNHKLNTLSDIFK--TENIPSHDAMDDILATKDLLIRAL 663


>gi|260597773|ref|YP_003210344.1| ribonuclease T [Cronobacter turicensis z3032]
 gi|260216950|emb|CBA30569.1| Ribonuclease T [Cronobacter turicensis z3032]
          Length = 223

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++EI AV L      +   + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAVTLKMDADGWLTPDETLHFHVEPFEGAILQP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        E N      +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCNRAIMVAHNATFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L   C   G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLAKACIAAGMPFDSAQAHSALYDTEQT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 ALLFCEIVNRWKRLG 205


>gi|21592760|gb|AAM64709.1| unknown [Arabidopsis thaliana]
          Length = 316

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 19/184 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +  IV D+ETTGL  KN+RIIEI A ++        TFQ  + P           +HGI 
Sbjct: 109 LTVIVSDLETTGLHRKNERIIEIAAQDIAGGGY--STFQTLVNPGVVPI--TNAHIHGIR 164

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHN-AKFDVGFINAELQRINKDPL 118
           ++ +   + P    +   F  +   +         +AHN   FD  F+  E  R + +  
Sbjct: 165 NDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIP 224

Query: 119 DPSRIIDTLSIARRKHPS------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               ++D+L +AR    S        + L +L   Y +T      H AL D  LLS V+ 
Sbjct: 225 HNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREG-DAHRALSDVLLLSKVFQ 283

Query: 173 KMMV 176
           K+ +
Sbjct: 284 KLTI 287


>gi|15240411|ref|NP_198046.1| exonuclease family protein [Arabidopsis thaliana]
 gi|30690464|ref|NP_851082.1| exonuclease family protein [Arabidopsis thaliana]
 gi|30690468|ref|NP_851083.1| exonuclease family protein [Arabidopsis thaliana]
 gi|42573491|ref|NP_974842.1| exonuclease family protein [Arabidopsis thaliana]
 gi|51968684|dbj|BAD43034.1| unknown protein [Arabidopsis thaliana]
 gi|108385373|gb|ABF85778.1| At5g26940 [Arabidopsis thaliana]
 gi|332006246|gb|AED93629.1| exonuclease family protein [Arabidopsis thaliana]
 gi|332006247|gb|AED93630.1| exonuclease family protein [Arabidopsis thaliana]
 gi|332006248|gb|AED93631.1| exonuclease family protein [Arabidopsis thaliana]
 gi|332006249|gb|AED93632.1| exonuclease family protein [Arabidopsis thaliana]
          Length = 316

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 19/184 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +  IV D+ETTGL  KN+RIIEI A ++        TFQ  + P           +HGI 
Sbjct: 109 LTVIVSDLETTGLHRKNERIIEIAAQDIAGGGY--STFQTLVNPGVVPI--TNAHIHGIR 164

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHN-AKFDVGFINAELQRINKDPL 118
           ++ +   + P    +   F  +   +         +AHN   FD  F+  E  R + +  
Sbjct: 165 NDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIP 224

Query: 119 DPSRIIDTLSIARRKHPS------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               ++D+L +AR    S        + L +L   Y +T      H AL D  LLS V+ 
Sbjct: 225 HNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREG-DAHRALSDVLLLSKVFQ 283

Query: 173 KMMV 176
           K+ +
Sbjct: 284 KLTI 287


>gi|163844775|ref|YP_001622430.1| DNA polymerase III epsilon subunit family exonuclease [Brucella
           suis ATCC 23445]
 gi|163675498|gb|ABY39608.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
           suis ATCC 23445]
          Length = 224

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 9/218 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++    +    + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +     +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  VHGFDNWMTCYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +  T+  ARR        L+    + G+  +   +HGAL D++L + +Y+        +
Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQGV 179

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                        +  K  P     +  +    R +  
Sbjct: 180 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 217


>gi|146306423|ref|YP_001186888.1| ribonuclease T [Pseudomonas mendocina ymp]
 gi|145574624|gb|ABP84156.1| RNAse T [Pseudomonas mendocina ymp]
          Length = 224

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI A    ++   +   + T    + P  G      AL+  
Sbjct: 31  PVVVDVETGGFNSATDALLEIAATTIAMDESGFLYPDHTHFFRIEPFEGANIEAAALEFT 90

Query: 64  GI-TDEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  D  L+   S      E +            + A  + HN+ FD+GF+NA + R   
Sbjct: 91  GIKLDHPLRMAVSEEHALGEIFKGLRKSIKSAGCKRAILVGHNSSFDLGFLNAAVARCGI 150

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  GI    +  H A  D+   ++++  
Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIEFDGKEAHSARYDTEKTAELFCG 208

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 209 IVNRWKEMG 217


>gi|315652207|ref|ZP_07905202.1| DNA polymerase III PolC-type [Eubacterium saburreum DSM 3986]
 gi|315485513|gb|EFU75900.1| DNA polymerase III PolC-type [Eubacterium saburreum DSM 3986]
          Length = 237

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 97/232 (41%), Gaps = 19/232 (8%)

Query: 7   MR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           MR    +  D+ETTG+    D+IIE+G +++++ S     F   + PN    S + L L 
Sbjct: 1   MRIKDYVAIDLETTGISVSKDKIIEVGLIKVIN-SHIEEMFSCIINPN-MPVSTKILNLT 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI +  +K       +  +  +F +    + I HN  FD  FI  E      +     R 
Sbjct: 59  GIDENEIKTARYIQDVIGDIVEFCD--GFDLIGHNTIFDYSFIKKEANNAGLNF--EKRG 114

Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           IDT  + ++  P   + +L   C  +GI    ++ H A  D++    +Y +++    ++ 
Sbjct: 115 IDTYKLCKKILPPYIQKNLTDACAYFGIE--RKNMHRAFSDAYFTHMLYQEILTNFKELE 172

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
              +  + +  K       N+ + KR K    ++ K         +  L ++
Sbjct: 173 IISEIMKVKLKK-------NVPIRKRTKEDLQKLLKCHRIVCKVNVDLLSES 217


>gi|261416372|ref|YP_003250055.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372828|gb|ACX75573.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326099|gb|ADL25300.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 188

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 9/154 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           ++  V D+ETTG   +++RI+EIG + L+D S+   T+   + P G+  +P   +L GIT
Sbjct: 2   LKFAVVDLETTGGHGEDNRIMEIG-IALMDGSEIVETYHALVDP-GKPITPFVRELTGIT 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE +  +P F  I          Q+  ++AHN +FD  ++ AEL+R      +P+R + T
Sbjct: 60  DEMVSGQPQFGVIAEHVAALL--QDRIFVAHNVQFDCKYMTAELKRCCIK-FNPAR-LCT 115

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHG 159
           + ++RR  P      L+ L +  G+     + H 
Sbjct: 116 VKLSRRVFPGQPSYSLHKLTESLGLP--DFNHHR 147


>gi|325289205|ref|YP_004265386.1| DNA polymerase III, epsilon subunit [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964606|gb|ADY55385.1| DNA polymerase III, epsilon subunit [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 410

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 15/190 (7%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTGL   K+DRIIE+  + L    +    ++  + P+ R   P    +H I+ 
Sbjct: 4   YAVLDLETTGLFPEKHDRIIEVAIIILNSKGEIADQYETLVNPD-RDLGP--THIHKISA 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + + P F  I  +       +    I HN  +D  FI  E +R+  +  +P ++  T 
Sbjct: 61  GMVSEAPKFKDIAGDIIHCLAGK--HIIGHNIAYDYRFIKHEFRRLKVEIPEP-QMSCTF 117

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            + R+  P      L +LC  + I + H+  H A  D +  + ++  ++        G K
Sbjct: 118 HLTRKVEPDLPCRKLEALCSYFDIPLEHK--HAAYFDCYATAVLFQTLLKK-----HGIK 170

Query: 187 TNEDRFFKEE 196
             E++  +E 
Sbjct: 171 ILEEKEIQEH 180


>gi|86140827|ref|ZP_01059386.1| DNA polymerase III, epsilon subunit [Leeuwenhoekiella blandensis
           MED217]
 gi|85832769|gb|EAQ51218.1| DNA polymerase III, epsilon subunit [Leeuwenhoekiella blandensis
           MED217]
          Length = 221

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 16/184 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59
           +    + R +VFD ETTG +++ DR++ IGA+EL       + +F++++         EA
Sbjct: 28  LPELEEARFVVFDTETTGTNAREDRMLSIGALELKGNKISLSSSFELYVKQEVFN--EEA 85

Query: 60  LKLHGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           + +HGI  E  K  K S       F +F    +A  + H+  FD+G IN  L+R+    L
Sbjct: 86  VAIHGILRENRKYKKVSEEEAVKAFLEFIG--DAILVGHHVGFDIGIINYALKRLGAPKL 143

Query: 119 DPSRIIDT-LSIARRKH------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             ++  DT +   R  H      P+    L+ LC+   I  + R  H A+ D+++ +  +
Sbjct: 144 -KNKFTDTGVLYKRTVHLVNITDPNKVYTLDDLCEELNIAKTDR--HKAMGDAYITALAF 200

Query: 172 IKMM 175
           +K+M
Sbjct: 201 LKVM 204


>gi|119478307|ref|ZP_01618338.1| ribonuclease T [marine gamma proteobacterium HTCC2143]
 gi|119448647|gb|EAW29892.1| ribonuclease T [marine gamma proteobacterium HTCC2143]
          Length = 235

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 87/196 (44%), Gaps = 20/196 (10%)

Query: 5   NKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-NGRKNS 56
           N+ R    +V D+ET G D + D I+EI A  + + D      ++TF   + P  G    
Sbjct: 27  NRFRGFLPVVIDVETGGFDCQTDAILEIAASTLTMNDEGIICIDKTFSFNVAPFEGANLE 86

Query: 57  PEALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINA 108
           P AL+  GI      ++      +F++  +   +Q        A  + HNA FD GF+ A
Sbjct: 87  PAALEFTGIDPYHPFREADPEEVVFTDLLNAIRKQVKVHDCTRAVLVGHNAHFDHGFVMA 146

Query: 109 ELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            ++R    ++P  P  + DT ++A       +  L   C+  GI+ ++   H A  D+  
Sbjct: 147 AVERCQIKRNPFHPFSVFDTATLAGLAF--GQTVLAKACQTAGISFNNAEAHSAAYDTGK 204

Query: 167 LSDVYIKMMVGGSQIN 182
            ++++  ++     + 
Sbjct: 205 TAELFCLIVNKWKDLG 220


>gi|170764037|ref|ZP_02630402.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens E str. JGS1987]
 gi|170664085|gb|EDT16768.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens E str. JGS1987]
          Length = 876

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 8/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
              K   IVFD+E+TG+D   D II+I A++L    +    F+ FL    +K+  ++  +
Sbjct: 504 EFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKN--KKSVKDSYYV 561

Query: 63  HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           HG +DE L+        +  EF ++   +++  + HN ++D+  + +EL+R N       
Sbjct: 562 HGFSDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFK 619

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              DTL I RR +P +    L +L K Y     H+  H A+ D     ++ ++ +
Sbjct: 620 TFYDTLDIYRRFYPGNINYKLENLSKVY--DTKHKPSHDAMDDIIATGELLVRAI 672


>gi|323466410|gb|ADX70097.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus H10]
          Length = 927

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 6   KMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K    V D+ETTG    K   II+ G   ++   K  +T+   + P+ R+     + L G
Sbjct: 7   KDTFAVVDLETTGTQREKGHHIIQFGC-AIIKNMKVVKTYSFMINPH-REIPQSVVNLTG 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I +E ++ +  FS    +  +    +   ++AHN  FD+ F+N EL +   + L  ++ I
Sbjct: 65  IHNEDVQGEDDFSVYAPKIIEIL--KGTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAI 121

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           DT+ +A+   P+     L+ L  +  I   H + H A  D++  + + IK++     +
Sbjct: 122 DTVELAKIAFPTLPSYKLSDLTAQLKIK--HLNPHKADSDAYGTAVLLIKIIHKLESL 177


>gi|23500370|ref|NP_699810.1| exonuclease [Brucella suis 1330]
 gi|161620685|ref|YP_001594571.1| exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|254702995|ref|ZP_05164823.1| exonuclease, RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
 gi|260568091|ref|ZP_05838560.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|23463988|gb|AAN33815.1| exonuclease, putative [Brucella suis 1330]
 gi|161337496|gb|ABX63800.1| Exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|260154756|gb|EEW89837.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
          Length = 224

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 9/218 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++    +    + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +  T+  ARR        L+    + G+      +HGAL D++L + +Y+        +
Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARMGH-RHGALEDAYLTAGLYLH----QQGV 179

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                        +  K  P     +  +    R +  
Sbjct: 180 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 217


>gi|326332133|ref|ZP_08198417.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium
           Broad-1]
 gi|325950104|gb|EGD42160.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium
           Broad-1]
          Length = 228

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 80/210 (38%), Gaps = 7/210 (3%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R N+    V D+ETTGLD   DR+I++   ++         ++  + P G    P  +++
Sbjct: 23  RGNRRGFAVLDVETTGLDPYRDRVIQVAIRQIAADGTAESEWETLVNP-GAGVDPGPVEV 81

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+T   L   P F  + +   +    +   ++AHNA FD  F+  E  R     L+   
Sbjct: 82  HGLTTADLAGAPPFRDVAATIAERLAGR--VFVAHNAAFDWAFVAVESDRAGVR-LEVLD 138

Query: 123 IIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            + T+  A+          L ++   Y +       H A  D+ + +++ ++ +    + 
Sbjct: 139 WLCTMRFAKALALDVPDKSLATIAAYYAVE--QLKAHDAGDDTRVAAEILLRELADADRA 196

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                       +   K           +P
Sbjct: 197 GLMLPLVACNSARHRLKRTLRRWFSGLARP 226


>gi|51969194|dbj|BAD43289.1| unknown protein [Arabidopsis thaliana]
          Length = 316

 Score =  132 bits (332), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 19/184 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +  IV D+ETTGL  +N+RIIEI A ++        TFQ  + P           +HGI 
Sbjct: 109 LTVIVSDLETTGLHRENERIIEIAAQDIAGGGY--STFQTLVNPGVVPI--TNAHIHGIR 164

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHN-AKFDVGFINAELQRINKDPL 118
           ++ +   + P    +   F  +   +         +AHN   FD  F+  E  R + +  
Sbjct: 165 NDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIP 224

Query: 119 DPSRIIDTLSIARRKHPS------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               ++D+L +AR    S        + L +L   Y +T      H AL D  LLS V+ 
Sbjct: 225 HNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREG-DAHRALSDVLLLSKVFQ 283

Query: 173 KMMV 176
           K+ +
Sbjct: 284 KLTI 287


>gi|311279484|ref|YP_003941715.1| ribonuclease T [Enterobacter cloacae SCF1]
 gi|308748679|gb|ADO48431.1| ribonuclease T [Enterobacter cloacae SCF1]
          Length = 217

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++E+ A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEVAAITLKMDEQGWLMPDTTLHFHVEPFEGANLMP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        +QN      +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPSNPLRGAVSEYDALHAIFKAVRKGIKDQNCNRAIMVAHNATFDHSFVMAA 132

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P    DT +++       +  L+  C   G+       H AL D+   
Sbjct: 133 AERAGLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACIAAGMAFDGAQAHSALYDTEQT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AQLFCEIVNRWKRLG 205


>gi|168490120|ref|ZP_02714319.1| exonuclease family protein [Streptococcus pneumoniae SP195]
 gi|183571500|gb|EDT92028.1| exonuclease family protein [Streptococcus pneumoniae SP195]
          Length = 307

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 83/222 (37%), Gaps = 20/222 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ET   +     +  IG V+  D +  + +F   + P    +      +HGIT E
Sbjct: 5   YVALDVETA--NDFRGSVCSIGLVKFKDGNIVD-SFYTLINPEEEFDDFNIF-IHGITPE 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +     DF        +AH A+FD+G +    Q+   D  D    I +  
Sbjct: 61  DVLDSPTFPEVRKAIVDFIGSD--IVVAHFAQFDMGALKDVYQKYELD-FDNIEYICSYR 117

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P      L  L K   I + H   H AL D+     +   ++   S  +F    
Sbjct: 118 LAKVALPGQLNYKLKRLAKNLNIELDH---HNALSDARASGLILEYLL---STNSFSDLN 171

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP------LFTRITKEELDE 223
              + +   K  +      KR K       L  + T+EE   
Sbjct: 172 AFLKEYSYNKTGLLGQYGFKRKKSYQYKENLIYQPTEEEKAA 213


>gi|161507623|ref|YP_001577577.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus DPC 4571]
 gi|160348612|gb|ABX27286.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus DPC 4571]
          Length = 927

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 9/178 (5%)

Query: 6   KMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K    V D+ETTG    K   II+ G   ++   K  +T+   + P+  +     + L G
Sbjct: 7   KDTFAVVDLETTGTQREKGHHIIQFGC-AIIKNMKVVKTYSFMINPH-HEIPQSVVNLTG 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I +E ++ K  FS    +  +    +   ++AHN  FD+ F+N EL +   + L  ++ I
Sbjct: 65  IHNEDVQGKDDFSVYAPKIIEIL--KGTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAI 121

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           DT+ +A+   P+     L+ L  +  I   H + H A  D++  + + IK++     +
Sbjct: 122 DTVELAKIAFPTLPSYKLSDLTAQLKIK--HLNPHKADSDAYGTAVLLIKIIHKLESL 177


>gi|329920271|ref|ZP_08277055.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus iners SPIN 1401G]
 gi|328936316|gb|EGG32764.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus iners SPIN 1401G]
          Length = 933

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 9/170 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K +DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+
Sbjct: 69  QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +A+   P+     L  +     I   H + H A  D+ + + + +K++ 
Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKIIE 173


>gi|301300766|ref|ZP_07206950.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851616|gb|EFK79316.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 929

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 11/176 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MI++      V D+ETTG      D+II+    + +  +K    F   + P G     E 
Sbjct: 1   MIKERI--YAVVDLETTGPKQDGSDKIIQFSC-DFVQSNKIVNHFSTLINP-GMPIPVEV 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            KL GI D+ ++  P F  +    +     QN  ++AHN  FD  F+++EL+R     L+
Sbjct: 57  KKLTGIKDKDVRYAPYFDEVAGTIYAML--QNTTFVAHNVNFDYSFLSSELERAGYPELE 114

Query: 120 PSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              ++DT+ + +  +P+     L  + K   + +SH   H A  D+   +++ I +
Sbjct: 115 L-PMMDTVQLTQIIYPTLVSYRLIDISKY--LQLSHIHPHKADSDTKATAELLINL 167


>gi|150007345|ref|YP_001302088.1| DNA polymerase III subunit epsilon [Parabacteroides distasonis ATCC
           8503]
 gi|255014024|ref|ZP_05286150.1| DNA polymerase III epsilon chain [Bacteroides sp. 2_1_7]
 gi|256839636|ref|ZP_05545145.1| DNA polymerase subunit III epsilon [Parabacteroides sp. D13]
 gi|262382080|ref|ZP_06075218.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_33B]
 gi|298375333|ref|ZP_06985290.1| exonuclease [Bacteroides sp. 3_1_19]
 gi|301310653|ref|ZP_07216592.1| exonuclease [Bacteroides sp. 20_3]
 gi|149935769|gb|ABR42466.1| DNA polymerase III epsilon chain [Parabacteroides distasonis ATCC
           8503]
 gi|256738566|gb|EEU51891.1| DNA polymerase subunit III epsilon [Parabacteroides sp. D13]
 gi|262297257|gb|EEY85187.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_33B]
 gi|298267833|gb|EFI09489.1| exonuclease [Bacteroides sp. 3_1_19]
 gi|300832227|gb|EFK62858.1| exonuclease [Bacteroides sp. 20_3]
          Length = 256

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 10/177 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    +   + FD+ETTG++   DRI+EI  V++    K   T    + P G    PE+ 
Sbjct: 1   MQLNLRNPLVFFDLETTGINIVKDRIVEISYVKVFPNGK-EETKTRRINP-GMPIPPEST 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
            +HGITDE +KD P+F  I          +  +   +N  +FD+  +  E  R   D  L
Sbjct: 59  AIHGITDEDVKDCPTFKEIAKSLATQI--EGCDLAGYNSNRFDIPMLAEEFLRAGVDIDL 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +  + ID  +I    H   +  L++  K Y    S  + H A  D+    +V    +
Sbjct: 117 NRRKFIDVQTI---FHKMEQRTLSAAYKFY-CNKSLENAHTAEADTLATYEVLKAQL 169


>gi|325978714|ref|YP_004288430.1| ATP-dependent DNA helicase DinG [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178642|emb|CBZ48686.1| ATP-dependent DNA helicase DinG [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 827

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 87/182 (47%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M++ N  +  + D+E TG  +    II++G V +++  +  +T+Q  + P+    S   +
Sbjct: 1   MMQVNSQKYAIVDLEATGAHAM-AEIIQVGIV-IIENDEIVKTYQTDVNPHEA-LSEHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITDE L   P FS +  E +     ++  ++AHN KFD   +  +L     +   P
Sbjct: 58  NLTGITDEQLAKAPDFSQVAQEVFSLI--EDCVFVAHNVKFDANLLAEQLFMEGYELRTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +DT+ +A+  +P+  +  L +      + +     H A+ D++  + +++K+     
Sbjct: 116 --RVDTVELAQVFYPTFEKYSLGN--LADALALDLADAHTAISDAYATTQLFLKLKAKMK 171

Query: 180 QI 181
            +
Sbjct: 172 SL 173


>gi|330973093|gb|EGH73159.1| ribonuclease T [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 213

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV +    K       T+   + P  G      AL+  
Sbjct: 20  PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFT 79

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
           GI  D  L+   S  +  ++              + A  + HNA FD+GF+NA + R+  
Sbjct: 80  GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 139

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  
Sbjct: 140 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 197

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 198 IVNRWKEMG 206


>gi|322650293|gb|EFY46707.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
          Length = 205

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 17/197 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKN 55
           M   +    +V D+ET G ++K D ++EI A+ L    +     + T    + P  G   
Sbjct: 1   MRPFSWFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANL 60

Query: 56  SPEALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
            PEAL  +GI     L+   S        +              A  +AHNA FD  F+ 
Sbjct: 61  QPEALAFNGIDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMM 120

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A   R  + ++P  P    DT +++       +  L+  C   G+       H AL D+ 
Sbjct: 121 AAAGRASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGEKAHSALYDTE 178

Query: 166 LLSDVYIKMMVGGSQIN 182
             + ++ +++    ++ 
Sbjct: 179 RTAVLFCEIVNRWKRLG 195


>gi|291544952|emb|CBL18061.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Ruminococcus sp. 18P13]
          Length = 176

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 9/170 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFD+ET   +  NDR+  IG   + D       F   + P          KL GI  +
Sbjct: 4   YIVFDVETP--NRSNDRMSAIGISAIKDNKIVANYFS-LVDPETH-FDYFNTKLTGIDAD 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K  P+F+ ++ +     ++     +AHNA F++  + A L+         ++ +  + 
Sbjct: 60  KVKGAPNFAELWKKIDPIMSKG--ILVAHNAVFNMSVLRACLRDYGISWKPTAKYLCMVR 117

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           I RR  P  +++LN +C  YGI + H   H A  DSH  +++ ++ +  G
Sbjct: 118 IGRRVLPDMKHNLNVMCDHYGIALDH---HQADSDSHACAEILLRYIESG 164


>gi|228477577|ref|ZP_04062210.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           salivarius SK126]
 gi|228250721|gb|EEK09919.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           salivarius SK126]
          Length = 828

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  KN  +  + D+E T   S    II++G V + +    +  F   + P+ ++     +
Sbjct: 1   MSEKNTNKYAIVDLEATSASS-TASIIQVGIVIMQNGQVIDE-FASDVNPH-QELDDHII 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I    ++    ++  ++AHN KFD   +   L     +   P
Sbjct: 58  HLTGITDQQLAQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLLAEALFMEGFELRTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DT+ +A+  +P+  +  L+ L K   + ++    H A+ D+     +   +M
Sbjct: 116 --RVDTVELAQVFYPTLEQYKLSHLSKVLNLDLA--QAHTAIEDARATGQLLFHLM 167


>gi|95930297|ref|ZP_01313034.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
 gi|95133549|gb|EAT15211.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
          Length = 193

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 93/189 (49%), Gaps = 10/189 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + D+ETTGLD   D II   AV++     T + ++ ++ P      PE+++ HGITD+
Sbjct: 6   FCIVDLETTGLDLTTDTIINAAAVKIKKGRIT-KIYETYVKPPT-SIPPESIQFHGITDD 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L DKPS   +  EF  F    ++    H+  FD+  ++  L+      L+ +  +DT+ 
Sbjct: 64  MLVDKPSIGEVLPEFMTFIG--DSMITGHHINFDLKMLDRHLRENYDCNLEGAPWLDTML 121

Query: 129 IARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           + +     ++   L+ L   Y I    R  H AL DS   + V+++++    +++  ++T
Sbjct: 122 LHKLVMENNTSTQLDDLLNVYCIDCEQR--HRALGDSIATAKVFLRIL---HELSNSYQT 176

Query: 188 NEDRFFKEE 196
             D +  ++
Sbjct: 177 LNDLYRAQQ 185


>gi|220904848|ref|YP_002480160.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869147|gb|ACL49482.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 176

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 10/169 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET+G  + +   + +     ++  +    F   + P   +      ++HG+T   
Sbjct: 10  VAIDFETSGYAAHSACAVGLA---RIEDGRVTEQFYSLVRPPSSRVL--FTEIHGLTWPM 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LK+ P F  ++ +   F        +AHNA FD   + A  +      +     + TL  
Sbjct: 65  LKNAPVFGDVWPQMESFMKGAG-VLLAHNASFDRRVLLACCREAGAG-VPEQHFLCTLKG 122

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           ARR  P     LN +C+ +GI + H   H A  D+   ++VY+ +   G
Sbjct: 123 ARRSLPLPSKKLNHVCEHFGIALEH---HHAGSDAAACAEVYLHLRALG 168


>gi|312875685|ref|ZP_07735686.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2053A-b]
 gi|311088939|gb|EFQ47382.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2053A-b]
          Length = 933

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 9/170 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K +DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+
Sbjct: 69  QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +A+   P+     L  +     I   H + H A  D+ + + + +K++ 
Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKIIE 173


>gi|227904085|ref|ZP_04021890.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
 gi|227868104|gb|EEJ75525.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
          Length = 927

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 5   NKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           NK    V D+ETTG   +N   II+ G   ++   K  +T+   + P+ R+     + L 
Sbjct: 6   NKDTFAVVDLETTGTQRENGHHIIQFGC-AIIKNMKVVKTYSFLINPH-REIPQSVVNLT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++E ++ +  F     +       Q+  ++AHN  FD+ F+N EL +   D L  ++ 
Sbjct: 64  GISNEDVQKQKDFDYYAPKIVSIL--QDTVFVAHNVDFDLPFLNYELTQHGYDAL-TNKA 120

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IDT+ +A+   P+     L  L  +  I   H + H A  D++  + + I+++
Sbjct: 121 IDTVELAKIAFPTLPSYKLGDLTSQLKIK--HLNPHKADSDAYGTAVLLIEII 171


>gi|58337449|ref|YP_194034.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM]
 gi|58254766|gb|AAV43003.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM]
          Length = 927

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 5   NKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           NK    V D+ETTG   +N   II+ G   ++   K  +T+   + P+ R+     + L 
Sbjct: 6   NKDTFAVVDLETTGTQRENGHHIIQFGC-AIIKNMKVVKTYSFLINPH-REIPQSVVNLT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI++E ++ +  F     +       Q+  ++AHN  FD+ F+N EL +   D L  ++ 
Sbjct: 64  GISNEDVQKQKDFDYYAPKIVSIL--QDTVFVAHNVDFDLPFLNYELTQHGYDAL-TNKA 120

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IDT+ +A+   P+     L  L  +  I   H + H A  D++  + + I+++
Sbjct: 121 IDTVELAKIAFPTLPSYKLGDLTSQLKIK--HLNPHKADSDAYGTAVLLIEII 171


>gi|90961663|ref|YP_535579.1| ATP-dependent helicase DinG [Lactobacillus salivarius UCC118]
 gi|90820857|gb|ABD99496.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius
           UCC118]
          Length = 929

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 11/176 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MI++      V D+ETTG      D+II+    + +  +K    F   + P G     E 
Sbjct: 1   MIKERI--YAVVDLETTGPKQDGSDKIIQFSC-DFVQSNKIVNHFSTLINP-GMPIPVEV 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            KL GI D+ ++  P F  +    +     QN  ++AHN  FD  F+++EL+R     L+
Sbjct: 57  KKLTGIKDKDVRYAPYFDEVAGTIYAML--QNTTFVAHNVNFDYSFLSSELERAGYPELE 114

Query: 120 PSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              ++DT+ + +  +P+     L  + K   + +SH   H A  D+   +++ I +
Sbjct: 115 L-PMMDTVQLTQIIYPTLVSYRLIDISKY--LQLSHIHPHKADSDTKATAELLINL 167


>gi|110801811|ref|YP_697750.1| helicase/exonuclease [Clostridium perfringens SM101]
 gi|110682312|gb|ABG85682.1| helicase/exonuclease [Clostridium perfringens SM101]
          Length = 870

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 8/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
              K   IVFD+E+TG+D   D II+I A++L    +    F+ FL    +K+  ++  +
Sbjct: 498 EFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKNVEVVDKFEKFLKN--KKSVKDSYYV 555

Query: 63  HGITDEFLKDKPSFSS-IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           HG +DE L+        +  EF ++   +++  + HN ++D+  + +EL+R N       
Sbjct: 556 HGFSDEMLQRIGEEKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFK 613

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              DTL I RR +P +    L +L K Y     H+  H A+ D     ++ ++ +
Sbjct: 614 TFYDTLDIYRRFYPGNINYKLENLSKVY--DTKHKPSHDAMDDIIATGELLVRAI 666


>gi|325912075|ref|ZP_08174473.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus iners
           UPII 143-D]
 gi|325476025|gb|EGC79193.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus iners
           UPII 143-D]
          Length = 933

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K +DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+
Sbjct: 69  QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +A+   P+     L  +     I   H + H A  D+ + + + +K++
Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKII 172


>gi|312871734|ref|ZP_07731822.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           3008A-a]
 gi|311092676|gb|EFQ51032.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           3008A-a]
          Length = 933

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K +DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+
Sbjct: 69  QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +A+   P+     L  +     I   H + H A  D+ + + + +K++
Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKII 172


>gi|228470614|ref|ZP_04055471.1| exonuclease [Porphyromonas uenonis 60-3]
 gi|228307741|gb|EEK16717.1| exonuclease [Porphyromonas uenonis 60-3]
          Length = 189

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 8/173 (4%)

Query: 4   KNKMRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            N +  I  D ET TG   +   I E+G   + +  +   T    + P G + S   ++ 
Sbjct: 1   MNTLDFIAIDFETATG---QRTSICEVGICLVRNG-EIAETRSWLVQPEGNRYSYWNMQC 56

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI  E  K  PSF+ ++ E  + +  + A  +AHN  FD   +    Q      L   +
Sbjct: 57  HGIRPEDTKRAPSFAEVWQEIAEQYIGEGALLVAHNVPFDRSCLEQAAQLYEL-TLPELQ 115

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +L  AR+ +    + L  LC++  I       H A  D+ + + +Y++ +
Sbjct: 116 WDCSLRRARQIYDYGCHTLAYLCEQLSIP--EGRHHRAGDDAEMCARLYLREL 166


>gi|312874151|ref|ZP_07734185.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2052A-d]
 gi|311090221|gb|EFQ48631.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2052A-d]
          Length = 933

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K +DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+
Sbjct: 69  QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +A+   P+     L  +     I   H + H A  D+ + + + +K++
Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKII 172


>gi|223933999|ref|ZP_03625955.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis
           89/1591]
 gi|223897336|gb|EEF63741.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis
           89/1591]
          Length = 822

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 10/168 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E TG    + +II+IG V + +    + ++   + P           L GITD
Sbjct: 12  RYAVVDLEATGT-GTDAKIIQIGIVLVENGEIID-SYATDINP-YELLDDHIKNLTGITD 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P F  + S  +D     +A ++AHN KFD   +   L     + L P   +DT+
Sbjct: 69  QQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTP--RVDTV 124

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +++   P+  +  L +L +   + +     H A+ D+   + + IK+
Sbjct: 125 ELSQLFFPTFEKYSLGNLAEHLELGLD--QAHTAISDALATARLLIKI 170


>gi|262365378|gb|ACY61935.1| DNA polymerase III, epsilon chain [Yersinia pestis D182038]
          Length = 128

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 53/114 (46%), Positives = 75/114 (65%), Gaps = 8/114 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  RIIEIGAVE+++   T R F V++ P+ R   PEA  +
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           HGI+DEFL DKP+F+ I  EF DF   + AE + HNA FD+GF++ E + + +D
Sbjct: 66  HGISDEFLADKPTFADITPEFLDFI--RGAELVIHNAAFDIGFMDYEFRMLQQD 117


>gi|240136987|ref|YP_002961456.1| hypothetical protein MexAM1_META1p0217 [Methylobacterium extorquens
           AM1]
 gi|240006953|gb|ACS38179.1| hypothetical protein, putative exonuclease domain [Methylobacterium
           extorquens AM1]
          Length = 297

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 83/212 (39%), Gaps = 10/212 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ET   + + D    +G +  ++  +  R     + P   + SP  +++HGI 
Sbjct: 1   MKVVAIDFETA--NERRDSACAVG-LAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGIL 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P+F  + +EF    +      +AHNA FD+G + A L     +P+       T
Sbjct: 58  PADVRDAPTFPEVIAEFLP--DLSGGLMLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           L IARR  P    + L  +  R GI   H   H A  D+   +++ +  +      +   
Sbjct: 115 LQIARRVFPDPAGHGLAKVASRLGIRFEH---HDAGEDAFACAEIALAALRETGAADIAD 171

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
                        T P   + +       R +
Sbjct: 172 LARGLGLTPIRALTTPRRDMTRSTSAKALRAS 203


>gi|116696325|ref|YP_841901.1| putative exonuclease [Ralstonia eutropha H16]
 gi|113530824|emb|CAJ97171.1| putative exonuclease [Ralstonia eutropha H16]
          Length = 220

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 9/168 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFDIETTGLDS+   I+EIGA+ +   S  + TFQV + P+ RK   +  +L GIT 
Sbjct: 51  RFVVFDIETTGLDSERHEILEIGAIRVNRNSNNHDTFQVLVKPS-RKVPKKITELTGITP 109

Query: 68  EFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           E +  +  S  S   +F  F    N   ++ NA+FD+ FI+    + +    +P      
Sbjct: 110 EMIEAEGVSLESAVQDFAKFAG--NLRLVSFNAEFDMAFISKAAGKSSITFANPVS--CA 165

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L ++RR  P  +   L  + K   +  S    H AL D    + VY  
Sbjct: 166 LKMSRRAWPDRKSYRLAEIAKDGNLDTSD--MHRALGDCQRAAIVYCA 211


>gi|302191304|ref|ZP_07267558.1| Rad3-related DNA helicase [Lactobacillus iners AB-1]
          Length = 933

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 9/170 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K +DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+
Sbjct: 69  QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +A+   P+     L  +     I   H + H A  D+ + + + +K++ 
Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKIIE 173


>gi|302333559|gb|ADL23752.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 184

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V+++D   T  TF   + P     S + +K+HGI  E
Sbjct: 6   FVALDFETA--NGKRTSICSVGMVKVIDSQIT-ETFHTLVNPQDY-FSQQNIKVHGIQPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P+F  +F     F    +   +AHNA FD+  ++  +Q I   P        +  
Sbjct: 62  DVENAPTFDYVFPYMMQFIA--DLPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQ 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+R   S R  L  + + Y +       H AL D+   + +  +++
Sbjct: 119 LAKRTVDSYRYGLKHMMEFYQLDF--HGHHDALNDAKACAMITFRLL 163


>gi|315653552|ref|ZP_07906472.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195]
 gi|315488914|gb|EFU78556.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195]
          Length = 936

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 9/170 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K +DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 14  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 71

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+
Sbjct: 72  QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 128

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +A+   P+     L  +     I   H + H A  D+ + + + +K++ 
Sbjct: 129 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKIIE 176


>gi|312872972|ref|ZP_07733032.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2062A-h1]
 gi|311091494|gb|EFQ49878.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2062A-h1]
          Length = 933

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K +DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+
Sbjct: 69  QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +A+   P+     L  +     I   H + H A  D+ + + + +K++
Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKII 172


>gi|259500615|ref|ZP_05743517.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335]
 gi|259167999|gb|EEW52494.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335]
          Length = 936

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 9/170 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K +DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 14  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 71

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+
Sbjct: 72  QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 128

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +A+   P+     L  +     I   H + H A  D+ + + + +K++ 
Sbjct: 129 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKIIE 176


>gi|332667256|ref|YP_004450044.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM
           1100]
 gi|332336070|gb|AEE53171.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 282

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 7/163 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             FDIE TGL+   DRI++I  ++     +  +   + + P G   S EA+ +HGI  + 
Sbjct: 10  CFFDIEATGLNVVRDRIVQIAIIKYFKDGREPQELSLMINP-GIPISLEAILVHGIQPKD 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           + +KP+F  +  + WDF    NA+   +N  +FD+  +  E  R+  +     R   ++ 
Sbjct: 69  VANKPTFQQLAQKIWDFIG--NADLAGYNSNRFDIPMLMEEFARVGMEFDVTKRR--SID 124

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           + R  +      L +  K Y     H   H A+ D     DV+
Sbjct: 125 VQRIFYKMEPRTLKAALKFY-CEKEHEDAHDAMADVRATIDVF 166


>gi|322615086|gb|EFY12009.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619925|gb|EFY16798.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322622237|gb|EFY19082.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627759|gb|EFY24549.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632896|gb|EFY29640.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322636613|gb|EFY33316.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322641194|gb|EFY37836.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644871|gb|EFY41404.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322655865|gb|EFY52167.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660193|gb|EFY56432.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665242|gb|EFY61430.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669499|gb|EFY65647.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673425|gb|EFY69527.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322677353|gb|EFY73417.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322679984|gb|EFY76023.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687456|gb|EFY83428.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323194090|gb|EFZ79289.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198572|gb|EFZ83673.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202899|gb|EFZ87934.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208618|gb|EFZ93556.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211154|gb|EFZ96001.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217595|gb|EGA02310.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323218944|gb|EGA03454.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227078|gb|EGA11258.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229397|gb|EGA13520.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236896|gb|EGA20968.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240342|gb|EGA24386.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323242669|gb|EGA26690.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323250235|gb|EGA34126.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252445|gb|EGA36292.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323256463|gb|EGA40196.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323261433|gb|EGA45016.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323267209|gb|EGA50694.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323272728|gb|EGA56133.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 215

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 77/195 (39%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQP 72

Query: 58  EALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109
           EAL  +GI     L+   S        +              A  +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             R  + ++P  P    DT +++       +  L+  C   G+       H AL D+   
Sbjct: 133 AGRASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGEKAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|188586746|ref|YP_001918291.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351433|gb|ACB85703.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 864

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 91/177 (51%), Gaps = 12/177 (6%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +  + + +VFD+ETTGLD+  D IIE+ A++       +  F  +L  +  K   E+ ++
Sbjct: 494 KFEQNKLVVFDVETTGLDTTKDEIIELAALKAGKDGVVDE-FHEYLRNS--KPVGESFQV 550

Query: 63  HGITDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           HGI+D+ L  + KP   S  + F +F +  + + + HN  +D+  +  + +++    L+ 
Sbjct: 551 HGISDQVLLEQGKPPEKS-LASFTNFID--DCDLVGHNVNYDITMVENQCKKLLNQDLEL 607

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
               DT+ I+RR  P   + +L SLC+   + IS +  H A+ D     ++   ++ 
Sbjct: 608 HGY-DTVDISRRYFPRLEKYNLESLCE--DLQISSKPTHRAMDDVEATFELLQILLE 661


>gi|296089746|emb|CBI39565.3| unnamed protein product [Vitis vinifera]
          Length = 332

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 85/206 (41%), Gaps = 23/206 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD ETTGL   NDRIIEIG  +L      N TFQ  + P     +P    +HGIT   
Sbjct: 129 IVFDTETTGLSRANDRIIEIGLQDL--GGGENSTFQTLVNPERIVPNP---HVHGITTYM 183

Query: 70  L--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121
           +   D P +  +      +   +        W+AHN + FDV F+  E  R N +     
Sbjct: 184 VNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPNW 243

Query: 122 RIIDTLSIARRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R +DTL +AR    S+ +       L +L + Y I +     H  L D + LS V   + 
Sbjct: 244 RFLDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVG-PAHRVLSDVYTLSQVLQMLT 302

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVP 201
                +        DR F       P
Sbjct: 303 FN---LKVSVANLLDRSFTASDIINP 325


>gi|225450649|ref|XP_002282861.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
 gi|225450651|ref|XP_002282855.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 337

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 85/206 (41%), Gaps = 23/206 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD ETTGL   NDRIIEIG  +L      N TFQ  + P     +P    +HGIT   
Sbjct: 134 IVFDTETTGLSRANDRIIEIGLQDL--GGGENSTFQTLVNPERIVPNP---HVHGITTYM 188

Query: 70  L--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121
           +   D P +  +      +   +        W+AHN + FDV F+  E  R N +     
Sbjct: 189 VNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPNW 248

Query: 122 RIIDTLSIARRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R +DTL +AR    S+ +       L +L + Y I +     H  L D + LS V   + 
Sbjct: 249 RFLDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVG-PAHRVLSDVYTLSQVLQMLT 307

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVP 201
                +        DR F       P
Sbjct: 308 FN---LKVSVANLLDRSFTASDIINP 330


>gi|18309405|ref|NP_561339.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13]
 gi|18144081|dbj|BAB80129.1| probable ATP-dependent DNA helicase [Clostridium perfringens str.
           13]
          Length = 870

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
              K   IVFD+E+TG+D   D II+I A++L    +    F+ FL    +K   ++  +
Sbjct: 498 EFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKN--KKPVKDSYYV 555

Query: 63  HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           HG +DE L+        +  EF ++   +++  + HN ++D+  + +EL+R N       
Sbjct: 556 HGFSDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFK 613

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              DTL I RR +P +    L +L K Y     H+  H A+ D     ++ ++ +
Sbjct: 614 TFYDTLDIYRRFYPGNINYKLENLSKVY--DTKHKPSHDAMDDIIATGELLVRAI 666


>gi|332756741|gb|EGJ87088.1| exonuclease family protein [Shigella flexneri 4343-70]
 gi|333004838|gb|EGK24360.1| exonuclease family protein [Shigella flexneri K-218]
          Length = 220

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N    + + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVN-PMSLLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|269139030|ref|YP_003295731.1| ribonuclease T [Edwardsiella tarda EIB202]
 gi|267984691|gb|ACY84520.1| ribonuclease T [Edwardsiella tarda EIB202]
 gi|304558963|gb|ADM41627.1| Ribonuclease T [Edwardsiella tarda FL6-60]
          Length = 254

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G D+  + ++EI AV L      + +T++     + P  G   SP
Sbjct: 46  RFRGFYPVVIDVETAGFDANRNALLEIAAVTLRMNDDGWLETDQCLHFHITPFEGAVLSP 105

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        +Q    A  +AHNA FD  F+ A 
Sbjct: 106 EALAFNGIDPHNPLRGAVSEYTALHAIFKMVRKGIKDQACNRAVVVAHNAHFDHSFLMAA 165

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P    DT +++       +  L   C    I       H AL D+   
Sbjct: 166 AERAGLKRNPFHPFATFDTAALSGLVL--GQTVLAKACLSAEIPFDSAQAHSALYDTQQT 223

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 224 ATLFCELVNRWKRLG 238


>gi|311110686|ref|ZP_07712083.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri MV-22]
 gi|311065840|gb|EFQ46180.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri MV-22]
          Length = 937

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 9/162 (5%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   ++ D II+ G   ++   K  +T+   + P+ R+       L  I++
Sbjct: 10  FAVVDLETTGTQRNQGDHIIQFGC-AIIKKRKVVKTYSFLINPH-REIPQAVENLTHISN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +     F+    +       +N  ++AHN  FD+ F+N EL     +PL   + IDT+
Sbjct: 68  RDVAQARDFNYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAIDTV 124

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            +A+   P+     L  L  R  I   H + H A  D+ + +
Sbjct: 125 ELAQIAFPTFPSYKLRDLTARLKIK--HLNPHRADSDALVTA 164


>gi|146386891|pdb|2IS3|A Chain A, Crystal Structure Of Escherichia Coli Rnase T
 gi|146386892|pdb|2IS3|B Chain B, Crystal Structure Of Escherichia Coli Rnase T
 gi|146386893|pdb|2IS3|C Chain C, Crystal Structure Of Escherichia Coli Rnase T
 gi|146386894|pdb|2IS3|D Chain D, Crystal Structure Of Escherichia Coli Rnase T
          Length = 215

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 77/195 (39%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKXDEQGWLXPDTTLHFHVEPFVGANLQP 72

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +   IF                 +AHNA FD  F  A 
Sbjct: 73  EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIXVAHNANFDHSFXXAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT ++A       +  L+  C+  G        H AL D+   
Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGXDFDSTQAHSALYDTERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 AVLFCEIVNRWKRLG 205


>gi|72161118|ref|YP_288775.1| exonuclease [Thermobifida fusca YX]
 gi|71914850|gb|AAZ54752.1| exonuclease [Thermobifida fusca YX]
          Length = 516

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 79/213 (37%), Gaps = 19/213 (8%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   V D+ETTGL+ K   R+ EI  V +         +   + P     +      HGI
Sbjct: 19  LTYAVLDLETTGLNPKRGARVCEIAVVRMRGDGTVLDEYSTLVNPGSSIRN---SAFHGI 75

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD ++K  PSF  +  +   + +   A  + H   F+  F+ AE  R+   PL     + 
Sbjct: 76  TDTWVKTAPSFDQVAGDLLAYLD--GAIVVGHKLDFEEKFLAAEFARLGV-PLTGIPGLC 132

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           TL  AR +       L  L           ++H AL D+  L+ V  +++    Q     
Sbjct: 133 TLVAARYQLDRYGYRLAHL-HHLLTGRWPTAEHSALGDARSLAAVLTELINAAPQ----- 186

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                     +  T   +  L R + +  R   
Sbjct: 187 ------PLHWDGPTPAPLPQLPRTRIIAPRAAA 213


>gi|168209034|ref|ZP_02634659.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|170712869|gb|EDT25051.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens B str. ATCC 3626]
          Length = 870

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
              K   IVFD+E+TG+D   D II+I A++L    +    F+ FL    +K   ++  +
Sbjct: 498 EFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKN--KKPVKDSYYV 555

Query: 63  HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           HG +DE L+        +  EF ++   +++  + HN ++D+  + +EL+R N       
Sbjct: 556 HGFSDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFK 613

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              DTL I RR +P +    L +L K Y     H+  H A+ D     ++ ++ +
Sbjct: 614 TFYDTLDIYRRFYPGNINYKLENLSKVY--DTKHKPSHDAMDDIIATGELLVRAI 666


>gi|116629671|ref|YP_814843.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238854243|ref|ZP_04644587.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri 202-4]
 gi|116095253|gb|ABJ60405.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238833054|gb|EEQ25347.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri 202-4]
          Length = 937

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 9/162 (5%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   ++ D II+ G   ++   K  +T+   + P+ R+       L  I++
Sbjct: 10  FAVVDLETTGTQRNQGDHIIQFGC-AIIKKRKVVKTYSFLINPH-REIPQAVENLTHISN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +     F+    +       +N  ++AHN  FD+ F+N EL     +PL   + IDT+
Sbjct: 68  RDVAQARDFNYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAIDTV 124

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            +A+   P+     L  L  R  I   H + H A  D+ + +
Sbjct: 125 ELAQIAFPTFPSYKLRDLTARLKIK--HLNPHRADSDALVTA 164


>gi|330811888|ref|YP_004356350.1| exonuclease [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379996|gb|AEA71346.1| Putative exonuclease [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 203

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V L      +R +Q  +   G +      +L GI+
Sbjct: 3   RIAVIDFETTGITPSSSCRATEIAVVMLEQGRIVDR-YQSLMN-AGVRVPAFIEQLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  L+  PS   + +E  +F        +AHNA FD  F + EL RI +  L       +
Sbjct: 61  NAMLRSAPSAEKVMNEVNEFVGI--TPLLAHNAAFDQKFWDFELGRIKRTRLQNFA--CS 116

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           L +ARR  P +  + L +L    G+       H A+ D+ + +++   +     Q
Sbjct: 117 LLLARRLMPAAPNHKLGTLNTFAGLP-HTGQAHRAMADAEMAANLTAHLASQLRQ 170


>gi|110805789|ref|YP_689309.1| exodeoxyribonuclease X [Shigella flexneri 5 str. 8401]
 gi|110615337|gb|ABF04004.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 220

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N    + + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVN-PMSLLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRCVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|182624633|ref|ZP_02952415.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
 gi|177910237|gb|EDT72625.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
          Length = 876

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 8/172 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K   IVFD+E+TG+D   D II+I A++L    +    F+ FL    +K   ++  +HG 
Sbjct: 507 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKN--KKPVKDSYYVHGF 564

Query: 66  TDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +DE L+        +  EF ++   +++  + HN ++D+  + +EL+R N          
Sbjct: 565 SDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFY 622

Query: 125 DTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DTL I RR +P +    L +L K Y     H+  H A+ D     ++ ++ +
Sbjct: 623 DTLDIYRRFYPGNINYKLENLSKVY--DTKHKPSHDAMDDIIATGELLVRAI 672


>gi|110634574|ref|YP_674782.1| DNA polymerase III, epsilon subunit [Mesorhizobium sp. BNC1]
 gi|110285558|gb|ABG63617.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1]
          Length = 498

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 84/168 (50%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD ETTGLD++  R++++  V +     + + +F+  + P G    P+++++HGITD 
Sbjct: 16  VAFDTETTGLDTRTARVVQVAGVAISRGAVRQDESFESLVHP-GMSIPPDSIRIHGITDG 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P+F++++  F  F   +    I +   FD+  I  E  R       P R +   +
Sbjct: 75  MLREAPAFAAVWRSFEMFRGVR--PLIGYAVGFDLAIIEREAARAGIRRKRP-RTLCVRT 131

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R  +   R + L +L    G  I  R  H AL D+   + V+  ++
Sbjct: 132 LSRIVNRDLRGHSLEALAAWLGFEIIGR--HQALDDAMAAAKVFTGLL 177


>gi|89098849|ref|ZP_01171730.1| hypothetical protein B14911_05299 [Bacillus sp. NRRL B-14911]
 gi|89086525|gb|EAR65645.1| hypothetical protein B14911_05299 [Bacillus sp. NRRL B-14911]
          Length = 243

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 9/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59
           +  ++M  IV DIETTG    + D II IGAV++ + +   ++ F   +    +  SP+ 
Sbjct: 52  VPLDRMEAIVMDIETTGFFPDQGDEIISIGAVKIENGTINEDKKFYSLIRYE-KTLSPQI 110

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +L G+    LK+ P    +  EF+ F   +    IAH+A+ +  F+     +  K PL 
Sbjct: 111 EQLTGLRGSQLKEAPPLPEVLIEFFKFCEAR--TIIAHHARHEKSFLQNASWKHFKAPL- 167

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             RIIDT  + R   P      L  LC   GI +  R  H AL D+ L ++++ 
Sbjct: 168 KHRIIDTSFLYRIAEPELNLQRLEDLCSHNGIPVMER--HHALEDARLAAELWC 219


>gi|146300234|ref|YP_001194825.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
 gi|146154652|gb|ABQ05506.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
          Length = 209

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 15/187 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL 60
           I   + R +V D ETTG D +NDRI+ IGA+ L +       +F+++L  +    S    
Sbjct: 18  ITIEETRFVVLDTETTGFDYENDRILCIGALALQNGVISVQDSFEIYLHQDHYDKS--TA 75

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGI  + L  +P+      +F DF    ++  IAH+  FDV  IN  L+R     L  
Sbjct: 76  QIHGILKDLLVKRPTELEALQQFLDFLG--DSIIIAHHTVFDVTMINKALERNGLPQL-T 132

Query: 121 SRIID-------TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++ +D       TL  +          L+ L  ++ I  S + +H AL D+++ +  ++K
Sbjct: 133 NKTLDTAYLYKKTLIQSHLFERKDHYTLDDLADKFDI--SKKDRHTALGDAYITAIAFLK 190

Query: 174 MMVGGSQ 180
           ++    +
Sbjct: 191 IVKKLRE 197


>gi|312278202|gb|ADQ62859.1| ATP-dependent DNA helicase [Streptococcus thermophilus ND03]
          Length = 828

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K+  +  + D+E T   S    II++G V + +    +  F   + P+ +K     +
Sbjct: 1   MSEKSTNKYAIVDLEATSASS-TACIIQVGIVIMQNGRVIDE-FASDVNPH-QKLDNHIV 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I    ++    ++  ++AHN KFD   +   L     +   P
Sbjct: 58  HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLLAEALFMEGFELRTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +DT+ +A+  +P+  + +L+ L +   + ++    H A+ D+     + + +M   +
Sbjct: 116 --RVDTVELAQVFYPTLEQYNLSYLSRVLNLDLA--QAHTAIEDARATGKLLLHLMDKIA 171

Query: 180 QI 181
            +
Sbjct: 172 SL 173


>gi|302023531|ref|ZP_07248742.1| ATP-dependent DNA helicase [Streptococcus suis 05HAS68]
          Length = 822

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 10/168 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E TG    + +II+IG V + +    + ++   + P           L GITD
Sbjct: 12  RYAVVDLEATGT-GTDAKIIQIGIVLVENGEIID-SYATDINP-YELLDDHIKNLTGITD 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P F  + S  +D     +A ++AHN KFD   +   L     + L P   +DT+
Sbjct: 69  QQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTP--RVDTV 124

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +++   P+  +  L +L +   + +     H A+ D+   + + IK+
Sbjct: 125 ELSQLFFPTFEKYSLGNLAEHLELGLD--QAHTAISDAMATARLLIKI 170


>gi|253751390|ref|YP_003024531.1| ATP-dependent DNA helicase [Streptococcus suis SC84]
 gi|253753291|ref|YP_003026431.1| ATP-dependent DNA helicase [Streptococcus suis P1/7]
 gi|253755878|ref|YP_003029018.1| ATP-dependent DNA helicase [Streptococcus suis BM407]
 gi|251815679|emb|CAZ51270.1| putative ATP-dependent DNA helicase [Streptococcus suis SC84]
 gi|251818342|emb|CAZ56163.1| putative ATP-dependent DNA helicase [Streptococcus suis BM407]
 gi|251819536|emb|CAR45129.1| putative ATP-dependent DNA helicase [Streptococcus suis P1/7]
          Length = 822

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 10/168 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E TG    + +II+IG V + +    + ++   + P           L GITD
Sbjct: 12  RYAVVDLEATGT-GTDAKIIQIGIVLVENGEIID-SYATDINP-YELLDDHIKNLTGITD 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P F  + S  +D     +A ++AHN KFD   +   L     + L P   +DT+
Sbjct: 69  QQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTP--RVDTV 124

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +++   P+  +  L +L +   + +     H A+ D+   + + IK+
Sbjct: 125 ELSQLFFPTFEKYSLGNLAEHLELGLD--QAHTAISDAMATARLLIKI 170


>gi|228476288|ref|ZP_04060989.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis
           SK119]
 gi|314936052|ref|ZP_07843401.1| exonuclease [Staphylococcus hominis subsp. hominis C80]
 gi|228269571|gb|EEK11077.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis
           SK119]
 gi|313655869|gb|EFS19612.1| exonuclease [Staphylococcus hominis subsp. hominis C80]
          Length = 185

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 13/187 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D ET   + K   I  +G V+++D      TF   + P+    S   + +HGI  +
Sbjct: 6   FIALDFETA--NKKRTSICSVGMVKVVDNEIV-ETFYTLVNPHDY-FSETHIHVHGIHPK 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P F  +F     F N+     +AHNA FD+G ++  L+ +N   +       +  
Sbjct: 62  DVKDAPDFKEVFPYMLQFINQ--LPVVAHNAAFDMGVLHQSLKHLNI-AVPSLTYFCSYQ 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----VGGSQINFG 184
           +ARR   + R  L  L   Y +       H AL D+   + +  +++       S + F 
Sbjct: 119 LARRTIKAYRYGLKHLMNHYNLNF--HGHHDALNDAKACAMITYRLLKHYDSLQSVLQFH 176

Query: 185 FKTNEDR 191
            K  +DR
Sbjct: 177 GKNLKDR 183


>gi|330989528|gb|EGH87631.1| ribonuclease T [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 225

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV    +   +     T+   + P  G    P AL+  
Sbjct: 32  PVVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFEGANVEPAALEFT 91

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
           GI  D  L+   S  +  ++              + A  + HNA FD+GF+NA + R+  
Sbjct: 92  GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  
Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 210 IVNRWKEMG 218


>gi|229552292|ref|ZP_04441017.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           rhamnosus LMS2-1]
 gi|258539701|ref|YP_003174200.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
           rhamnosus Lc 705]
 gi|229314364|gb|EEN80337.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           rhamnosus LMS2-1]
 gi|257151377|emb|CAR90349.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus
           rhamnosus Lc 705]
          Length = 933

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 24/236 (10%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K  DR+I+ G   L+ + K  +T    + P+ R       +L GI+ 
Sbjct: 7   FAVVDLETTGTSVKDGDRMIQFGC-ALVRHGKIIQTISQMINPD-RSVPQTIQRLTGISP 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L   P F  +         +    ++AHN  FD  F+NAE +RI    L     IDT+
Sbjct: 65  ERLVAAPYFDEVAPALHQVLTK--TVFVAHNVNFDYPFLNAEFERIGLPKL-QLEAIDTV 121

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI----N 182
            +A+   P  S   L+ L   + I   H + H A  D+   + + +++      +     
Sbjct: 122 ELAQVLLPEISSFRLSDLTTHFAIQ--HDNPHQADSDATSTAKLLLQLKARFQALPTPTQ 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRD--------KPLFTR---ITKEELDEHDKT 227
                  D F +E    +  I+   R          PL  R    T  +L      
Sbjct: 180 QALIQRHDGFIRETGDYLKMIASPPRPLKKEFVQVGPLVLRRPMTTPTDLAAAGAY 235


>gi|330832545|ref|YP_004401370.1| Rad3-related DNA helicase [Streptococcus suis ST3]
 gi|329306768|gb|AEB81184.1| Rad3-related DNA helicase [Streptococcus suis ST3]
          Length = 837

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 10/168 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E TG    + +II+IG V + +    + ++   + P           L GITD
Sbjct: 27  RYAVVDLEATGT-GTDAKIIQIGIVLVENGEIID-SYATDINP-YELLDDHIKNLTGITD 83

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P F  + S  +D     +A ++AHN KFD   +   L     + L P   +DT+
Sbjct: 84  QQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTP--RVDTV 139

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +++   P+  +  L +L +   + +     H A+ D+   + + IK+
Sbjct: 140 ELSQLFFPTFEKYSLGNLAEHLELGLD--QAHTAISDAMATARLLIKI 185


>gi|304312854|ref|YP_003812452.1| Ribonuclease T [gamma proteobacterium HdN1]
 gi|301798587|emb|CBL46817.1| Ribonuclease T [gamma proteobacterium HdN1]
          Length = 223

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G +S+ D ++EI A+    +   + K  RT    + P  G     
Sbjct: 12  RFRGFLPVVIDVETGGFNSQTDALLEIAAISLHFDENGWLKKYRTSHFHVSPFAGANIEK 71

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAE 109
            +L+  GI         + +K + + IF E     +    + A  + HNA FD  F+ A 
Sbjct: 72  ASLEFTGIDPWHPFRNAVDEKVALTEIFGEVRKALSNLECKRAILVGHNAFFDHQFLFAA 131

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            QR  I ++P  P    DT ++        +  L   C   GI+ + +  H AL D+   
Sbjct: 132 TQRAAIKRNPFHPFSCFDTATLGGVAL--GQTVLARACIAAGISFNQKEAHSALYDADKT 189

Query: 168 SDVYIKMMVGGSQIN 182
           +D++  ++     + 
Sbjct: 190 ADLFCHIVNRWRALG 204


>gi|212640084|ref|YP_002316604.1| Exonuclease [Anoxybacillus flavithermus WK1]
 gi|212561564|gb|ACJ34619.1| Exonuclease [Anoxybacillus flavithermus WK1]
          Length = 222

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 8/179 (4%)

Query: 9   KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
             VFD ETTG      DR+IEIGAV++   +   + TF  ++ PN R   P  ++L  IT
Sbjct: 29  FTVFDTETTGFHVATVDRLIEIGAVQVKGTAVIEDETFHTYVNPN-RDLPPVIVELTNIT 87

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +E +K  P+      +F+ F  ++ +  ++ H   FD+  +  EL+R       P   ID
Sbjct: 88  EEKVKHAPTAIEALQQFFQFVEQKQSVCFVGHYISFDLFVLKHELRREKMKFRKP-TFID 146

Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           TL +     PS    DL    + +G  +  R  H A+ D+   + ++++++       +
Sbjct: 147 TLDLIGFIAPSYDMRDLERYAQAFGTRMYER--HSAIGDALTTAYLFVELLQQFRLRGY 203


>gi|55822780|ref|YP_141221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus thermophilus CNRZ1066]
 gi|55738765|gb|AAV62406.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 828

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K+  +  + D+E T   S    II++G V + +    +  F   + P+ +K     +
Sbjct: 1   MSEKSTNKYAIVDLEATSASS-TACIIQVGIVIMQNGRVIDE-FASDVNPH-QKLDNHIV 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I    ++    ++  ++AHN KFD   +   L     +   P
Sbjct: 58  HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLLAEALFMEGFELRTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +DT+ +A+  +P+  + +L+ L +   + ++    H A+ D+     + + +M   +
Sbjct: 116 --RVDTVELAQVFYPTLEQYNLSYLSRVLNLDLA--QAHTAIEDARATGKLLLHLMDKIA 171

Query: 180 QI 181
            +
Sbjct: 172 SL 173


>gi|325271798|ref|ZP_08138267.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
 gi|324103069|gb|EGC00447.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
          Length = 201

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 15/186 (8%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+      R  E+  V +L+  +    +Q  +   G         L GIT
Sbjct: 3   RIAVIDFETTGISPGAGCRATEVAVV-MLEGGRIVERYQSLMN-AGVPVPAFVAGLTGIT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+  P    + +E  +F  E     +AHNA FD  F + EL RI +          +
Sbjct: 61  TAMLRSAPPVDKVMNEVAEFVGE--TPLLAHNAAFDQKFWDYELARIGRS--RSQSFACS 116

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV------GGS 179
           L ++RR  P +  + L +L +  G+     + H A+ D+ + +++   +        G  
Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLP-DTGNAHRAMADAEMAANLMQHLAGVLREQHGVQ 175

Query: 180 QINFGF 185
           Q++ G 
Sbjct: 176 QLSHGL 181


>gi|170764220|ref|ZP_02638287.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens CPE str. F4969]
 gi|170715785|gb|EDT27967.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens CPE str. F4969]
          Length = 876

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 8/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
              K   IVFD+E+TG+D   D II+I A++L    +    F+ FL    +K+  ++  +
Sbjct: 504 EFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKN--KKSVKDSYYV 561

Query: 63  HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           HG +DE L+        +  EF ++   +++  + HN ++D+  + +EL+R N       
Sbjct: 562 HGFSDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFK 619

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              DTL I RR +P +    L +L K Y     H+  H A+ D     ++ ++ +
Sbjct: 620 TFYDTLDIYRRFYPGNINYKLENLSKVY--DTKHKPSHDAMDDIIATGELLVRAI 672


>gi|253773201|ref|YP_003036032.1| exodeoxyribonuclease X [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161904|ref|YP_003045012.1| exodeoxyribonuclease X [Escherichia coli B str. REL606]
 gi|297519020|ref|ZP_06937406.1| exodeoxyribonuclease X [Escherichia coli OP50]
 gi|242377565|emb|CAQ32320.1| exonuclease X [Escherichia coli BL21(DE3)]
 gi|253324245|gb|ACT28847.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973805|gb|ACT39476.1| exodeoxyribonuclease X [Escherichia coli B str. REL606]
 gi|253977999|gb|ACT43669.1| exodeoxyribonuclease X [Escherichia coli BL21(DE3)]
          Length = 220

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAIAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|242041211|ref|XP_002468000.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor]
 gi|241921854|gb|EER94998.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor]
          Length = 583

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 82/180 (45%), Gaps = 19/180 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG   + DRIIE    +L+     N TFQ  + P     +     +HGI++ 
Sbjct: 383 ILVFDIETTGFSRREDRIIEFAVRDLMGGK--NSTFQTLINPEKEVRNA---YVHGISNS 437

Query: 69  FL--KDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP 120
            L   D P F  +      +      + +   W+AHN + FDV F+  E +R   +    
Sbjct: 438 MLCRPDVPRFGELVPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLIFEFRRCKLEMPGD 497

Query: 121 SRIIDTLSIARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DTL IAR+   S     S   L +L +RY I ++  S H A+ D   L  V  K+ 
Sbjct: 498 WLFVDTLPIARQLVDSDGSKLSSVSLKNLRERYNIPLTG-SAHRAMQDVTTLCYVLQKLT 556


>gi|319757677|gb|ADV69619.1| Rad3-related DNA helicase [Streptococcus suis JS14]
          Length = 837

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 10/168 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E TG    + +II+IG V + +    + ++   + P           L GITD
Sbjct: 27  RYAVVDLEATGT-GTDAKIIQIGIVLVENGEIID-SYATDINP-YELLDDHIKNLTGITD 83

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P F  + S  +D     +A ++AHN KFD   +   L     + L P   +DT+
Sbjct: 84  QQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTP--RVDTV 139

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +++   P+  +  L +L +   + +     H A+ D+   + + IK+
Sbjct: 140 ELSQLFFPTFEKYSLGNLAEHLELGLD--QAHTAISDAMATARLLIKI 185


>gi|312172307|emb|CBX80564.1| ribonuclease T [Erwinia amylovora ATCC BAA-2158]
          Length = 224

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G D+K + ++EI AV    +   + + + T    + P  G     
Sbjct: 15  RFRGFYPVVIDVETAGFDAKTNALLEIAAVTLKMDSEGWLEKDETLHFNVEPFPGSVMLA 74

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        +        +AHNA FD+ F+NA 
Sbjct: 75  EALAFNGIDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAA 134

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L   C   G++      H AL D+   
Sbjct: 135 AERASLKRNPFHPFVTFDTAALSGLVL--GQTVLAKACNAAGMSFDSAQAHSALYDTLQT 192

Query: 168 SDVYIKMMVGGSQIN 182
           +D++ +++    ++ 
Sbjct: 193 ADLFCELVNRWKRLG 207


>gi|146318210|ref|YP_001197922.1| Rad3-related DNA helicase [Streptococcus suis 05ZYH33]
 gi|146320404|ref|YP_001200115.1| Rad3-related DNA helicase [Streptococcus suis 98HAH33]
 gi|145689016|gb|ABP89522.1| Rad3-related DNA helicase [Streptococcus suis 05ZYH33]
 gi|145691210|gb|ABP91715.1| Rad3-related DNA helicase [Streptococcus suis 98HAH33]
 gi|292558009|gb|ADE31010.1| DnaQ exonuclease [Streptococcus suis GZ1]
          Length = 837

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 10/168 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E TG    + +II+IG V + +    + ++   + P           L GITD
Sbjct: 27  RYAVVDLEATGT-GTDAKIIQIGIVLVENGEIID-SYATDINP-YELLDDHIKNLTGITD 83

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P F  + S  +D     +A ++AHN KFD   +   L     + L P   +DT+
Sbjct: 84  QQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTP--RVDTV 139

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +++   P+  +  L +L +   + +     H A+ D+   + + IK+
Sbjct: 140 ELSQLFFPTFEKYSLGNLAEHLELGLD--QAHTAISDAMATARLLIKI 185


>gi|313884171|ref|ZP_07817937.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620618|gb|EFR32041.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 849

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 83/176 (47%), Gaps = 12/176 (6%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             + DIETTG +  + DRII+I A+ +++  +  + + + + PN         KL GI++
Sbjct: 5   IAIVDIETTGPNLDQGDRIIQIAAL-IIEEGQVTKEYDMLINPN-MPIPSHISKLTGISN 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++  P  S +       +  ++  ++AHN  FD+ F+         D   P+  +DT+
Sbjct: 63  EQVQKAPHLSQVID--LWHYRLKDCIFVAHNINFDLRFLKQCFHHFGLDFNPPA--LDTV 118

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVGGSQ 180
            +A+   P +   +L  L +   +       H AL D+ + + +  +I  ++  ++
Sbjct: 119 KLAKIFMPQAIGFNLTDLSQEMNLFFD--QAHQALADAKITAYLLDWIAQLIIQAE 172


>gi|193212627|ref|YP_001998580.1| DNA polymerase III subunit epsilon [Chlorobaculum parvum NCIB 8327]
 gi|193086104|gb|ACF11380.1| DNA polymerase III, epsilon subunit [Chlorobaculum parvum NCIB
           8327]
          Length = 232

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +++D ETTG D ++DRII IGAV           +F+V L      +  +A+ +HG+ 
Sbjct: 44  RFVIYDTETTGFDFRHDRIISIGAVGTKGEVIDIADSFEVLLRQE-VCSERDAVTVHGLL 102

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +      S     F D+    NA  +AH+A FD+  IN  L R     L  +  +DT
Sbjct: 103 KRDIDSGLEESEAVCRFLDYLG--NAVIVAHHADFDIAMINQVLSRRFGMRLF-NEALDT 159

Query: 127 LSIARRK---------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            S A+R          H      L++LC RYGI +  R  H A  D++L + ++ +++  
Sbjct: 160 ASFAKRLEKGPYYNLAHKGGEYRLDNLCARYGIRLYDR--HTAPGDAYLTAQLFQRLLAL 217

Query: 178 GSQINF 183
           G +   
Sbjct: 218 GRKAGI 223


>gi|292488168|ref|YP_003531050.1| ribonuclease T [Erwinia amylovora CFBP1430]
 gi|291553597|emb|CBA20642.1| ribonuclease T [Erwinia amylovora CFBP1430]
          Length = 226

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G D+K + ++EI AV L      + + + T    + P  G     
Sbjct: 15  RFRGFYPVVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDETLHFNVEPFPGSVLLA 74

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        +        +AHNA FD+ F+NA 
Sbjct: 75  EALAFNGIDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAA 134

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L   C   G++      H AL D+   
Sbjct: 135 AERASLKRNPFHPFVTFDTAALSGLVL--GQTVLAKACNAAGMSFDSAQAHSALYDTLQT 192

Query: 168 SDVYIKMMVGGSQIN 182
           +D++ +++    ++ 
Sbjct: 193 ADLFCELVNRWKRLG 207


>gi|268319456|ref|YP_003293112.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785]
 gi|262397831|emb|CAX66845.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785]
          Length = 938

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 9/161 (5%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   ++ D II+ G   ++   K  +T+   + P+ R+       L  I++
Sbjct: 10  FAVVDLETTGTQRNQGDHIIQFGC-AIIKKRKVVKTYSFLINPH-REIPQAVENLTHISN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +     FS    +       +N  ++AHN  FD+ F+N EL     +PL   + +DT+
Sbjct: 68  EDVAKAHDFSYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAVDTV 124

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +A+   P+     L  L  R  I   H + H A  D+ + 
Sbjct: 125 ELAQIVFPTFPSYKLRDLTARLRIK--HLNPHRADSDALVT 163


>gi|189346782|ref|YP_001943311.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245]
 gi|189340929|gb|ACD90332.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245]
          Length = 205

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 94/187 (50%), Gaps = 16/187 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +++R +VFD ETTG D K D+II IGA+       +   +F+V +    +    +A+ +
Sbjct: 13  LSEVRFVVFDTETTGFDLKTDKIISIGAIALTAQRIEVGDSFEVLVRQE-KVGDRDAVSV 71

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+  + +       S  + F D+    N+  +A +A FD+  +N  L +     L  + 
Sbjct: 72  HGLLRKDIASGIDEKSAVTAFLDYIG--NSVLVAQHAGFDITMVNRVLWKHFGIRLF-ND 128

Query: 123 IIDTLSIARRK---------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++DT S+A+R          H +    L++LC+RY I +  R  H +  D++L + ++ +
Sbjct: 129 VVDTASLAKRLEKGPYYNLAHKAGEYRLDNLCERYNIRLHDR--HTSAGDAYLTAQLFQR 186

Query: 174 MMVGGSQ 180
           ++  G +
Sbjct: 187 LLAKGKK 193


>gi|307565507|ref|ZP_07627990.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii
           CRIS 21A-A]
 gi|307345787|gb|EFN91141.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii
           CRIS 21A-A]
          Length = 183

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 7/175 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N +  I  D ET    +K   I E G + ++   K   T    + P   + S   +++H
Sbjct: 1   MNNINFIAIDFETA--TAKRSSICEAG-ICVVKGGKVVETKSWLVRPEDNRYSYWNIQIH 57

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI  +     P+F  ++ E   +  +     +AHNA FD+  I   LQ ++  P      
Sbjct: 58  GIRPQDTAYAPTFPKVWEEITTYLRDCP-VLVAHNAAFDMSCIRHTLQ-LHHLPCPDIDY 115

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +L  AR  +    N L+ LC  + I  S+ + H A  D+ + + ++++ +  G
Sbjct: 116 YCSLRAARHIYDFGCNTLDYLCDHFSI--SYGTHHRAGDDAEMCARLFLQEIKDG 168


>gi|148546369|ref|YP_001266471.1| ribonuclease T [Pseudomonas putida F1]
 gi|166200017|sp|A5VZH7|RNT_PSEP1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|148510427|gb|ABQ77287.1| RNAse T [Pseudomonas putida F1]
 gi|313497451|gb|ADR58817.1| Ribonuclease T [Pseudomonas putida BIRD-1]
          Length = 224

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV +    K       T+   + P  G    P AL+  
Sbjct: 31  PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGANIEPAALEFT 90

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI  D  L+   S  S  ++              + A  + HN+ FD+GF+NA + R  +
Sbjct: 91  GIKLDHPLRMAVSEESAMTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARNDL 150

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+   I    R  H A  D+   ++++  
Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTAELFCG 208

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 209 IVNRWKEMG 217


>gi|154492230|ref|ZP_02031856.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC
           43184]
 gi|154087455|gb|EDN86500.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC
           43184]
          Length = 256

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 15/210 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    K   + FD+ETTG++   DRI+EI  V++    K   +    + P      PE+ 
Sbjct: 1   MQLNLKNPLVFFDLETTGINIVKDRIVEISFVKVYPNGK-EESKTRRINPE-MPIPPEST 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
            +HGITDE +KD P+F  I          +  +   +N  +FD+  +  E  R   D  L
Sbjct: 59  AIHGITDEDVKDCPTFKEIAKSLAAQI--EGCDLAGYNSNRFDIPLLAEEFLRAGVDIDL 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +  + +D  +I    H   +  L +  K Y    S  + H A  D+    +V    +   
Sbjct: 117 NKRKFVDVQTI---FHKMEQRTLAAAYKFY-CDKSLENAHTAEADTMATYEVLKAQLDRY 172

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
            ++      N+  F  +      N+    R
Sbjct: 173 PELQ-----NDINFLSQYSSYTNNVDFAGR 197


>gi|292899378|ref|YP_003538747.1| ribonuclease T [Erwinia amylovora ATCC 49946]
 gi|291199226|emb|CBJ46341.1| ribonuclease T [Erwinia amylovora ATCC 49946]
          Length = 224

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G D+K + ++EI AV L      + + + T    + P  G     
Sbjct: 13  RFRGFYPVVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDETLHFNVEPFPGSVLLA 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        +        +AHNA FD+ F+NA 
Sbjct: 73  EALAFNGIDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L   C   G++      H AL D+   
Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLVL--GQTVLAKACNAAGMSFDSAQAHSALYDTLQT 190

Query: 168 SDVYIKMMVGGSQIN 182
           +D++ +++    ++ 
Sbjct: 191 ADLFCELVNRWKRLG 205


>gi|13507773|ref|NP_109722.1| DNA polymerase III PolC [Mycoplasma pneumoniae M129]
 gi|2494192|sp|P75080|DPO3_MYCPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1673778|gb|AAB95768.1| DNA polymerase III (dnaE) alpha chain [Mycoplasma pneumoniae M129]
          Length = 1443

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 94/213 (44%), Gaps = 13/213 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            +      ++FDIETTGL  + D +IE   +++    +  R  Q FL  +G        +
Sbjct: 401 TKLKDATFVIFDIETTGLHGRYDSVIEFAGIKVKHNREVER-MQFFLKIDG-PLPAAVTE 458

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP 120
           +  IT   L+D     +   +   + +      +AHN   FD+ F+  + ++ N  PL  
Sbjct: 459 ITKITQAQLEDGMEQQAGLEKLRAWLD--GCVMVAHNGLSFDLPFLQTQFEKYNIAPL-T 515

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY------IK 173
           + +IDTL+++   +P  + + L+++C +          H A  D+  L  V+      ++
Sbjct: 516 NPLIDTLALSWALNPGFASHTLSNICAKLKFDFDDERLHRADYDTQALKKVFDYFKEQVE 575

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
           +M   +      + N+   F+  K+T  N  ++
Sbjct: 576 LMGITNLEQLDQELNQQCHFELLKRTFTNTGII 608


>gi|289676753|ref|ZP_06497643.1| ribonuclease T [Pseudomonas syringae pv. syringae FF5]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV +    K       T+   + P  G      AL+  
Sbjct: 32  PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFT 91

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
           GI  D  L+   S  +  ++              + A  + HNA FD+GF+NA + R+  
Sbjct: 92  GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  
Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 210 IVNRWKEMG 218


>gi|329667338|gb|AEB93286.1| ATP dependent helicase [Lactobacillus johnsonii DPC 6026]
          Length = 938

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 9/161 (5%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   ++ D II+ G   ++   K  +T+   + P+ R+       L  I++
Sbjct: 10  FAVVDLETTGTQRNQGDHIIQFGC-AIIKKRKVVKTYSFLINPH-REIPQAVENLTHISN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +     FS    +       +N  ++AHN  FD+ F+N EL     +PL   + +DT+
Sbjct: 68  EDVAQAHDFSYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAVDTV 124

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +A+   P+     L  L  R  I   H + H A  D+ + 
Sbjct: 125 ELAQIAFPTFPSYKLRDLTARLRIK--HLNPHRADSDALVT 163


>gi|312863243|ref|ZP_07723481.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           vestibularis F0396]
 gi|311100779|gb|EFQ58984.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           vestibularis F0396]
          Length = 839

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  KN  +  + D+E T   S    II++G V + +    +  F   + P+ ++     +
Sbjct: 12  MSEKNTNKYAIVDLEATSASS-TACIIQVGIVIMQNGLVIDE-FASDVNPH-QELDDHIV 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I    ++    ++  ++AHN KFD   +   L     +   P
Sbjct: 69  HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLLAEALFMEGFELRTP 126

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +DT+ +A+  +P+  +  L+ L +   + ++    H A+ D+     +   +M   +
Sbjct: 127 --RVDTVELAQVFYPTLEQYKLSYLSQVLNLDLA--QAHTAIEDARATGQLLFHLMDKIA 182

Query: 180 QI 181
            +
Sbjct: 183 SL 184


>gi|333003546|gb|EGK23086.1| exonuclease family protein [Shigella flexneri VA-6]
 gi|333004693|gb|EGK24216.1| exonuclease family protein [Shigella flexneri K-272]
 gi|333018414|gb|EGK37712.1| exonuclease family protein [Shigella flexneri K-227]
          Length = 220

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N    + + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVN-PMSLLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|212723090|ref|NP_001131224.1| hypothetical protein LOC100192533 [Zea mays]
 gi|194690922|gb|ACF79545.1| unknown [Zea mays]
          Length = 315

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 85/180 (47%), Gaps = 19/180 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG   ++DRIIE    +L+     N TFQ  + P       +   +HGI + 
Sbjct: 115 ILVFDIETTGFSRRDDRIIEFAVRDLMGGK--NNTFQTLINPEK---DVKNTYVHGINNS 169

Query: 69  FL--KDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP 120
            L   D P F  I      +      + +   W+AHN + FDV F+  E +R   +    
Sbjct: 170 MLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGD 229

Query: 121 SRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DTL IA++   S+ + L+S     L +RY I ++  S H A+ D   LS V  K+ 
Sbjct: 230 WLFVDTLPIAKQLVDSNGSKLSSVSLKFLRERYKIPLTG-SAHRAMQDVTTLSYVLQKLT 288


>gi|254558840|ref|YP_003065935.1| hypothetical protein METDI0201 [Methylobacterium extorquens DM4]
 gi|254266118|emb|CAX21870.1| hypothetical protein, putative exonuclease domain [Methylobacterium
           extorquens DM4]
          Length = 297

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 83/212 (39%), Gaps = 10/212 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ET   + + D    +G +  ++  +  R     + P   + SP  +++HGI 
Sbjct: 1   MKVVAIDFETA--NERRDSACAVG-LAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGIL 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P+F  + +EF    +      +AHNA FD+G + A L     +P+       T
Sbjct: 58  PADVRDAPTFPEVIAEFLP--DLSGGLMLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           L IARR  P    + L  +  R GI   H   H A  D+   +++ +  +      +   
Sbjct: 115 LQIARRVFPDPAGHGLAKVAGRLGIRFEH---HDAGEDAFACAEIALAALRETGAADIAD 171

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
                        T P   + +       R +
Sbjct: 172 LARGLGLTPIRALTTPRRDMTRSTSAKALRAS 203


>gi|227890026|ref|ZP_04007831.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC
           33200]
 gi|227849470|gb|EEJ59556.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC
           33200]
          Length = 938

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 9/161 (5%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   ++ D II+ G   ++   K  +T+   + P+ R+       L  I++
Sbjct: 10  FAVVDLETTGTQRNQGDHIIQFGC-AIIKKRKVVKTYSFLINPH-REIPQAVENLTHISN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +     FS    +       +N  ++AHN  FD+ F+N EL     +PL   + +DT+
Sbjct: 68  EDVAKAHDFSYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAVDTV 124

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +A+   P+     L  L  R  I   H + H A  D+ + 
Sbjct: 125 ELAQIVFPTFPSYKLRDLTARLRIK--HLNPHRADSDALVT 163


>gi|301633239|gb|ADK86793.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           pneumoniae FH]
          Length = 1443

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 94/213 (44%), Gaps = 13/213 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            +      ++FDIETTGL  + D +IE   +++    +  R  Q FL  +G        +
Sbjct: 401 TKLKDATFVIFDIETTGLHGRYDSVIEFAGIKVKHNREVER-MQFFLKIDG-PLPAAVTE 458

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP 120
           +  IT   L+D     +   +   + +      +AHN   FD+ F+  + ++ N  PL  
Sbjct: 459 ITKITQAQLEDGMEQQAGLEKLRAWLD--GCVMVAHNGLSFDLPFLQTQFEKYNIAPL-T 515

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY------IK 173
           + +IDTL+++   +P  + + L+++C +          H A  D+  L  V+      ++
Sbjct: 516 NPLIDTLALSWALNPGFASHTLSNICAKLKFDFDDERLHRADYDTQALKKVFDYFKEQVE 575

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
           +M   +      + N+   F+  K+T  N  ++
Sbjct: 576 LMGITNLEQLDQELNQQCHFELLKRTFTNTGII 608


>gi|290969003|ref|ZP_06560538.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290780959|gb|EFD93552.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 869

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 15/216 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD+E+TG +   D II+I AV L         F  +L P+  +   ++  +HG++DEF
Sbjct: 501 IVFDVESTGTNPLQDEIIQIAAVRLRTDGTIQEKFMTYLRPS--RTVGDSYAIHGLSDEF 558

Query: 70  L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L K+          F  F   +++  + HN  +D+  + +EL R++         +DTL 
Sbjct: 559 LQKNGTDARRALQNFLTF--AKDSLIVGHNVLYDISILQSELSRLSLPCPTEMPYMDTLD 616

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI-----KMMVGGSQIN 182
           I RR +P   +  L  L   +  + +H+  H A  D    +D+       K++   +   
Sbjct: 617 IYRRFYPDLEKYTLEFLSHHF--STAHKPSHNAWDDILATADLLQTVLQEKILSQTATRR 674

Query: 183 FGFKTNEDRF--FKEEKKTVPNISLLKRDKPLFTRI 216
             F T   RF  F E+   +   S   R   L TRI
Sbjct: 675 ELFTTYAHRFISFSEKISALRRQSYSLRPHELLTRI 710


>gi|221195007|ref|ZP_03568063.1| putative exonuclease, RNase T and DNA polymerase III [Atopobium
           rimae ATCC 49626]
 gi|221184910|gb|EEE17301.1| putative exonuclease, RNase T and DNA polymerase III [Atopobium
           rimae ATCC 49626]
          Length = 251

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 21/176 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ETTGLD + D II++  ++    S     F+  +CP  RK  P A +++GIT 
Sbjct: 22  KILCIDTETTGLDPRKDEIIQLSMIDGHGKSI----FESLICPPTRKRWPNAQEINGITP 77

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +K KP    +  +  +  N  +   + +N  FD+  + AE               D +
Sbjct: 78  KMVKGKPELEEVADQVQEAINAADL-IVGYNLPFDISMMEAE-----GFDFSDKEQYDLM 131

Query: 128 SIARRKHPSSRN--------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               +      +         L +  K YGI     + H A  D+     ++  M+
Sbjct: 132 EDYAQVFGRWSSAKDDYLWTKLTTAAKHYGIKF---AAHDAGEDARATIKLFYAML 184


>gi|168494862|ref|ZP_02719005.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|168494874|ref|ZP_02719017.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|168495024|ref|ZP_02719167.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575147|gb|EDT95675.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575215|gb|EDT95743.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575301|gb|EDT95829.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
          Length = 307

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 82/222 (36%), Gaps = 20/222 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ET   +     +  IG V+  D +  +  F   + P    +      +HGIT E
Sbjct: 5   YVALDVETA--NDFRGSVCSIGLVKFKDGNIVD-AFYTLINPEEEFDDFNIF-IHGITPE 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+F  +     DF        +AH A+FD+G +    Q+   D  D    I +  
Sbjct: 61  DVLDSPTFPEVRKAIVDFIGSD--IVVAHFAQFDMGALKDVYQKYELD-FDNIEYICSYR 117

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +A+   P      L  L K   I + H   H AL D+     +   ++   S  +F    
Sbjct: 118 LAKVALPGQLNYKLKRLAKNLNIELDH---HNALSDARASGLILEYLL---STNSFSDLN 171

Query: 188 NEDRFFKEEKKTVPNISLLKRDKP------LFTRITKEELDE 223
              + +   K  +      KR K       L  + T+EE   
Sbjct: 172 AFLKEYSYNKTGLLGQYGFKRKKSYQYKENLIYQPTEEEKAA 213


>gi|238810189|dbj|BAH69979.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 1467

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 6/169 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FDIETTGL  +   IIE G++ +    K  R  Q F+        P    L GIT+ 
Sbjct: 432 YVSFDIETTGLCPRFAVIIEYGSLPIHSNMKYGRKTQFFIKCQ-EPIKPFTENLTGITNA 490

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            + K          + ++  N + A  +AHNA+FD  F+  + ++   +      +IDTL
Sbjct: 491 MIEKSGLELKEALQKIYNDLNGKIA--LAHNARFDFNFLKEKFRQAKIE-FPNVTVIDTL 547

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++R   P   ++ L  +  R G+       H    D+ +L++V++ +M
Sbjct: 548 IVSRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDYDAKVLAEVWVALM 596


>gi|77413703|ref|ZP_00789886.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus agalactiae 515]
 gi|77160248|gb|EAO71376.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus agalactiae 515]
          Length = 835

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K   +  V D+E TG       I     +   +  K   +++  + P+        +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P F  +    +     ++  ++AHN KFD   +  +L     +   P
Sbjct: 72  HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTP 129

Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              IDT+ +++  +P   +  L +L +   I ++    H A+ D+   + ++IK+    S
Sbjct: 130 --RIDTVELSQVFYPCLEKYSLGALAESLNIELTD--AHTAIADARATAQLFIKLKAKIS 185

Query: 180 QI 181
            +
Sbjct: 186 SL 187


>gi|319777750|ref|YP_004137401.1| DNA polymerase iii alpha subunit [Mycoplasma fermentans M64]
 gi|318038825|gb|ADV35024.1| DNA polymerase III alpha subunit [Mycoplasma fermentans M64]
          Length = 1461

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 6/169 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FDIETTGL  +   IIE G++ +    K  R  Q F+        P    L GIT+ 
Sbjct: 426 YVSFDIETTGLCPRFAVIIEYGSLPIHSNMKYGRKTQFFIKCQ-EPIKPFTENLTGITNA 484

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            + K          + ++  N + A  +AHNA+FD  F+  + ++   +      +IDTL
Sbjct: 485 MIEKSGLELKEALQKIYNDLNGKIA--LAHNARFDFNFLKEKFRQAKIE-FPNVTVIDTL 541

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++R   P   ++ L  +  R G+       H    D+ +L++V++ +M
Sbjct: 542 IVSRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDYDAKVLAEVWVALM 590


>gi|303246654|ref|ZP_07332932.1| DNA polymerase III, epsilon subunit [Desulfovibrio fructosovorans
           JJ]
 gi|302491994|gb|EFL51872.1| DNA polymerase III, epsilon subunit [Desulfovibrio fructosovorans
           JJ]
          Length = 240

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 20/185 (10%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKL 62
            + +  +V D E TG D +   ++ IGAV L         +F   + P+ R    +A  +
Sbjct: 38  LDDLPFVVVDTELTGFDPRRHAMVAIGAVRLRGLTLLPGESFFSLVRPS-RDVPRDASLI 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+TD  L D P  +   + F DF     A  + H+ + D+ FINA  +R     L  + 
Sbjct: 97  HGLTDAALADAPETAETLAAFLDFLGP--AIIVGHHVELDMAFINAASRRYFGGELA-AP 153

Query: 123 IIDTLSIA------RRKHPSSR-------NDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            IDTL +A      R+     +        DL SLC+RYG+     + H AL D++  + 
Sbjct: 154 CIDTLRLALTYEEKRQMGQGGQGDFERLEFDLASLCRRYGLPP--FAAHDALGDAYGAAY 211

Query: 170 VYIKM 174
           +++ +
Sbjct: 212 LFLYL 216


>gi|21684658|gb|AAL87523.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps]
          Length = 212

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 5/156 (3%)

Query: 19  LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSS 78
           L  +  R+ E+G VE+     T   F  ++ P  R  +  A  +HG+ DEFL  +P+FS+
Sbjct: 1   LSPRYHRLAEVGCVEIACGRITGNYFHAYINPRQR-MTRGAQAVHGLRDEFLATQPAFSA 59

Query: 79  IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTLSIARRKHPS 136
           I      F  +  +  + HN  FD+ F++A L      P        IDT+    ++   
Sbjct: 60  IAQRLLFFLCQ--STLVGHNLSFDLNFLDAGLATAGFMPAARYCHGVIDTMCHLAQRGSR 117

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            R  L++ C   G+    R++HGAL+D+ LL++ ++
Sbjct: 118 RRFSLDACCDMLGVRRGDRARHGALVDAVLLAEAFV 153


>gi|42519127|ref|NP_965057.1| hypothetical protein LJ1202 [Lactobacillus johnsonii NCC 533]
 gi|41583414|gb|AAS09023.1| hypothetical protein LJ_1202 [Lactobacillus johnsonii NCC 533]
          Length = 938

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 9/161 (5%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   ++ D II+ G   ++   K  +T+   + P+ R+       L  I++
Sbjct: 10  FAVVDLETTGTQRNQGDHIIQFGC-AIIKKRKVVKTYSFLINPH-REIPQAVENLTHISN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +     FS    +       +N  ++AHN  FD+ F+N EL     +PL   + +DT+
Sbjct: 68  EDVAQAHDFSYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAVDTV 124

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +A+   P+     L  L  R  I   H + H A  D+ + 
Sbjct: 125 ELAQIAFPTFPSYKLRDLTARLRIK--HLNPHRADSDALVT 163


>gi|22536702|ref|NP_687553.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus agalactiae 2603V/R]
 gi|25010639|ref|NP_735034.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus agalactiae NEM316]
 gi|22533544|gb|AAM99425.1|AE014216_1 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus agalactiae 2603V/R]
 gi|23094993|emb|CAD46214.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 835

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K   +  V D+E TG       I     +   +  K   +++  + P+        +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P F  +    +     ++  ++AHN KFD   +  +L     +   P
Sbjct: 72  HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTP 129

Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              IDT+ +++  +P   +  L +L +   I ++    H A+ D+   + ++IK+    S
Sbjct: 130 --RIDTVELSQVFYPCLEKYSLGALAESLNIELTD--AHTAIADARATAQLFIKLKAKIS 185

Query: 180 QI 181
            +
Sbjct: 186 SL 187


>gi|77405453|ref|ZP_00782546.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae H36B]
 gi|77175946|gb|EAO78722.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae H36B]
          Length = 835

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K   +  V D+E TG       I     +   +  K   +++  + P+        +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIXGN--KIIDSYETDVNPH-ESLDEHIV 71

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P F  +    +     ++  ++AHN KFD   +  +L     +   P
Sbjct: 72  HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTP 129

Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              IDT+ +++  +P   +  L +L +   I ++    H A+ D+   + ++IK+    S
Sbjct: 130 --RIDTVELSQVFYPCLEKYSLGALAESLNIELTD--AHTAIADARATAQLFIKLKAKIS 185

Query: 180 QI 181
            +
Sbjct: 186 SL 187


>gi|224476950|ref|YP_002634556.1| hypothetical protein Sca_1466 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421557|emb|CAL28371.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 185

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 11/182 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  KN    +  D ET   + K   I  +G V+++D      TF   + PN    S + +
Sbjct: 1   MNDKNA--FVALDFETA--NGKRTSICSVGMVKVVDNEIV-ETFYTLVNPNDY-FSQQNI 54

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI  E +   P F+ +      F   +N   +AHNA FD+  ++A +Q +  D    
Sbjct: 55  NVHGIQPEDVATAPVFNFVLPYMLQFI--ENLPVVAHNAAFDMTVLHASIQALGLDT-PE 111

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                +L +ARR   ++R  LN + + Y +       H AL D+   + +  +++     
Sbjct: 112 MTYFCSLQLARRTVNANRYGLNHMMEYYHLDF--HGHHDALNDAKACAMITFRLLKNYDS 169

Query: 181 IN 182
           +N
Sbjct: 170 LN 171


>gi|76786927|ref|YP_329306.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus agalactiae A909]
 gi|77411574|ref|ZP_00787916.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae CJB111]
 gi|76561984|gb|ABA44568.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae A909]
 gi|77162359|gb|EAO73328.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae CJB111]
          Length = 835

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K   +  V D+E TG       I     +   +  K   +++  + P+        +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P F  +    +     ++  ++AHN KFD   +  +L     +   P
Sbjct: 72  HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTP 129

Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              IDT+ +++  +P   +  L +L +   I ++    H A+ D+   + ++IK+    S
Sbjct: 130 --RIDTVELSQVFYPCLEKYSLGALAESLNIELTD--AHTAIADARATAQLFIKLKAKIS 185

Query: 180 QI 181
            +
Sbjct: 186 SL 187


>gi|237731882|ref|ZP_04562363.1| exodeoxyribonuclease X [Citrobacter sp. 30_2]
 gi|226907421|gb|EEH93339.1| exodeoxyribonuclease X [Citrobacter sp. 30_2]
          Length = 226

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 24/178 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +++ M +I  D ET GL      I+EI +V+++D    N      + P+ R  SP+A+
Sbjct: 1   MGQEHGMLRI-IDTETCGLQGG---IVEIASVDVVDGKIVNPMSH-LVRPD-RPISPQAM 54

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +H IT+  + DKP    +  +   ++  +   ++AHNA FD   +          P  P
Sbjct: 55  AIHRITEAMVADKPWIEDVIPQ---YYGSE--WYVAHNASFDRRVL----------PDMP 99

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
              I T+ ++RR  P  +    +L K   +++   +    H AL D ++ + + I +M
Sbjct: 100 GEWICTMKLSRRLWPGIKYSNMALYKSRKLSVQTPAGLHHHRALYDCYITAALLIDIM 157


>gi|145219710|ref|YP_001130419.1| DNA polymerase III, epsilon subunit [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205874|gb|ABP36917.1| DNA polymerase III, epsilon subunit [Chlorobium phaeovibrioides DSM
           265]
          Length = 221

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 16/182 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGIT 66
           R +VFD ETTG D +NDR+I IGAV L   + T   +F+V +   G     E++ +HG+ 
Sbjct: 33  RFVVFDTETTGFDLQNDRVISIGAVALEGSAITIADSFEVLVRQPGV-GQKESVSVHGLL 91

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +    S     + F D+    N+  +A +A FDV  +N  L  + +  L    ++DT
Sbjct: 92  KKDIASGVSERDGVTSFLDYIG--NSILVAQHASFDVAMLNRLLWELFRIRLFNG-VVDT 148

Query: 127 LSIARRK---------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            S+A+R          H +    L+ LC+RYGI +  R  H +  D++L + +  +++  
Sbjct: 149 ASLAKRLEKGPYHNLAHKAGEYRLDHLCQRYGIRLHDR--HTSAGDAYLTAQLLQRLLAK 206

Query: 178 GS 179
           G 
Sbjct: 207 GR 208


>gi|325841946|ref|ZP_08167523.1| UvrD/REP helicase [Turicibacter sp. HGF1]
 gi|325489779|gb|EGC92134.1| UvrD/REP helicase [Turicibacter sp. HGF1]
          Length = 849

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 96/175 (54%), Gaps = 9/175 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +  K R ++FD+E+TGLD   D +I+I A+EL++   T R+F+ F+ P+   +  ++  +
Sbjct: 489 QFEKGRIVIFDVESTGLDVTQDEVIQIAAIELVNGEYT-RSFERFIKPSH--SVGDSALV 545

Query: 63  HGITDEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           HG +D++L +    +  +F +F  F   + A  I HN ++D+  +++++ R+     +  
Sbjct: 546 HGFSDDYLNEHGEEAREVFLQFQAFV--EGALLIGHNVQYDLKIVSSQMNRLGLMFENSM 603

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              DTL I RR +P  + + L+++    G+  SH   H A+ D     DV +K M
Sbjct: 604 GYYDTLDIVRRLYPDLKNHKLDTVSAYVGV--SHEPTHNAMDDILATKDVLVKSM 656


>gi|293375967|ref|ZP_06622227.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
 gi|292645404|gb|EFF63454.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
          Length = 849

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 96/175 (54%), Gaps = 9/175 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +  K R ++FD+E+TGLD   D +I+I A+EL++   T R+F+ F+ P+   +  ++  +
Sbjct: 489 QFEKGRIVIFDVESTGLDVTQDEVIQIAAIELVNGEYT-RSFERFIKPSH--SVGDSALV 545

Query: 63  HGITDEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           HG +D++L +    +  +F +F  F   + A  I HN ++D+  +++++ R+     +  
Sbjct: 546 HGFSDDYLNEHGEEAREVFLQFQAFV--EGALLIGHNVQYDLKIVSSQMNRLGLMFENSM 603

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              DTL I RR +P  + + L+++    G+  SH   H A+ D     DV +K M
Sbjct: 604 GYYDTLDIVRRLYPDLKNHKLDTVSAYVGV--SHEPTHNAMDDILATKDVLVKSM 656


>gi|306845957|ref|ZP_07478524.1| DNA polymerase III, epsilon chain [Brucella sp. BO1]
 gi|306273592|gb|EFM55437.1| DNA polymerase III, epsilon chain [Brucella sp. BO1]
          Length = 235

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 5/172 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++    +    + +SP+A  
Sbjct: 9   IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGDELLTQSLY-LIFDPRKDSSPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 67  IHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDIHYIQREFRKAEVDMLD-Q 124

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +  T+  ARR        L+    + G+  +   +HGAL D++L + +Y+ 
Sbjct: 125 PVYCTMEGARRLWRGDSAKLDHCLAKIGLARTGY-RHGALEDAYLTAGLYLH 175


>gi|149020300|ref|ZP_01835192.1| hypothetical protein CGSSp23BS72_05994 [Streptococcus pneumoniae
           SP23-BS72]
 gi|147930602|gb|EDK81584.1| hypothetical protein CGSSp23BS72_05994 [Streptococcus pneumoniae
           SP23-BS72]
          Length = 308

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 11/176 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D+ET   +S    +  IG V+ +D  + + +F   + P   K S   +K+H I  E
Sbjct: 5   FIALDVETA--NSFRGSLCSIGLVKFIDGQEVD-SFYTLINPE-EKFSSRNIKIHAIKPE 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+F  +  E  +F +  N   +AHNA+FD   +     +    P D  +   +  
Sbjct: 61  DVIGAPTFPEVQKEIINFID--NLPIVAHNARFDAYALQDVYLKYEI-PFDNIQYFCSYQ 117

Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           + +        + L++L + + I++ H   H AL D+     + ++++    Q + 
Sbjct: 118 VCKIILTDLPNHKLHTLAEHFKISLDH---HNALSDARACGLILLEILKLSKQTSI 170


>gi|70732181|ref|YP_261937.1| ribonuclease T [Pseudomonas fluorescens Pf-5]
 gi|123653314|sp|Q4K746|RNT_PSEF5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|68346480|gb|AAY94086.1| ribonuclease T [Pseudomonas fluorescens Pf-5]
          Length = 223

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI A    ++   +     T+   + P  G      AL+  
Sbjct: 30  PVVVDVETGGFNSATDALLEIAATTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFT 89

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI  D  L+   S  +  ++              + A  + HN+ FD+GF+NA + R  +
Sbjct: 90  GIKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDM 149

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+   I    R  H A  D+   ++++  
Sbjct: 150 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQSADIDFDGREAHSARYDTEKTAELFCG 207

Query: 174 MMVGGSQIN 182
           ++    Q+ 
Sbjct: 208 IVNRWKQMG 216


>gi|237798772|ref|ZP_04587233.1| ribonuclease T [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021625|gb|EGI01682.1| ribonuclease T [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 225

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV +    K       T+   + P  G      AL+  
Sbjct: 32  PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFT 91

Query: 64  GITDEF-----LKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRI-- 113
           GI  +      + ++ + + IF            + A  + HNA FD+GF+NA + R+  
Sbjct: 92  GIKLDHPLRMAVSEETAINDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  
Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 210 IVNRWKEMG 218


>gi|259908542|ref|YP_002648898.1| ribonuclease T [Erwinia pyrifoliae Ep1/96]
 gi|224964164|emb|CAX55671.1| Ribonuclease T [Erwinia pyrifoliae Ep1/96]
 gi|283478503|emb|CAY74419.1| ribonuclease T [Erwinia pyrifoliae DSM 12163]
          Length = 219

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G D+K + ++EI AV L      + + + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDDTLHFHVEPFAGSVLLP 72

Query: 58  EALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109
           EAL  +GI     L+   S        +              A  +AHNA FD+ F+NA 
Sbjct: 73  EALTFNGIDPTNPLRGAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L   C   G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLAKACHAAGMAFDSAQAHSALYDTLQT 190

Query: 168 SDVYIKMMVGGSQIN 182
           +D++ +++    ++ 
Sbjct: 191 ADLFCELVNRWKRLG 205


>gi|220907711|ref|YP_002483022.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
 gi|219864322|gb|ACL44661.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
          Length = 829

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 15/222 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            + R +VFD+ETTG     D +IE+ A+  L++ +    F  ++         E  ++HG
Sbjct: 457 QQGRLVVFDVETTGFSGAADEVIELAAI-ALEHGQIREEFNRYIRNT--VPVGETQQVHG 513

Query: 65  ITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            +D+FL       +++F EF +F   Q A  + HN  FD+  + A  +R+  +     R 
Sbjct: 514 YSDDFLATHGQPAATVFREFCEF--SQGAVLVGHNLGFDIKMVTAHARRVGIE-FPSPRW 570

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM------VG 177
            DTL++A R   S    L +L     ++ +    H A  D+     +   ++        
Sbjct: 571 EDTLNLAHRFIQSENYKLATLASSLNLSAT--PTHRASDDTRTTVALLEAILPLLDSGRT 628

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
             Q       ++ R    +     ++S   R   L  ++  E
Sbjct: 629 ARQALVAAYADQFRPLAAQFAQWRDLSHQLRPAALMEKVLWE 670


>gi|66047122|ref|YP_236963.1| ribonuclease T [Pseudomonas syringae pv. syringae B728a]
 gi|302184721|ref|ZP_07261394.1| ribonuclease T [Pseudomonas syringae pv. syringae 642]
 gi|75500938|sp|Q4ZPJ7|RNT_PSEU2 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|63257829|gb|AAY38925.1| Ribonuclease T [Pseudomonas syringae pv. syringae B728a]
          Length = 225

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV +    K       T+   + P  G      AL+  
Sbjct: 32  PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFT 91

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
           GI  D  L+   S  +  ++              + A  + HNA FD+GF+NA + R+  
Sbjct: 92  GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  
Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 210 IVNRWKEMG 218


>gi|322516980|ref|ZP_08069870.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus vestibularis ATCC 49124]
 gi|322124463|gb|EFX95958.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus vestibularis ATCC 49124]
          Length = 828

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  KN  +  + D+E T   S    II++G V + +    +  F   + P+ ++     +
Sbjct: 1   MSEKNTNKYAIVDLEATSASS-TACIIQVGIVIMQNGLVIDE-FASDVNPH-QELDDHIV 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I    ++    ++  ++AHN KFD   +   L     +   P
Sbjct: 58  HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLLAEALFMEGFELRTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +DT+ +A+  +P+  +  L+ L +   + ++    H A+ D+     +   +M   +
Sbjct: 116 --RVDTVELAQVFYPTLEQYKLSYLSQVLNLDLA--QAHTAIEDARATGQLLFHLMDKIA 171

Query: 180 QI 181
            +
Sbjct: 172 SL 173


>gi|94676709|ref|YP_588563.1| ribonuclease T [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|166228561|sp|Q1LU01|RNT_BAUCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|94219859|gb|ABF14018.1| ribonuclease T [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 218

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G +S  D ++EI A+    +   + KT++T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNSGTDALLEIAAITLQMDHHGWLKTHKTLHFNIEPFPGSILQP 72

Query: 58  EALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109
           EAL  +GI  D  L+   +      E +          +   A  +AHNA FD  F+ A 
Sbjct: 73  EALIFNGIDPDNPLRYAVTEREALYELFTIVHQGIKDDDCHRAILVAHNAAFDHSFLMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             R  I  +P  P    DT +++       +  L   C   GI  +    H AL D+   
Sbjct: 133 ANRTKIKHNPFHPFATFDTAALSGLVL--GQTVLLKACLTAGIPFNTSEAHSALYDAERT 190

Query: 168 SDVYIKMMVGGSQIN 182
           ++++ +++    ++ 
Sbjct: 191 AELFCELVNRWKRLG 205


>gi|300904709|ref|ZP_07122542.1| exonuclease [Escherichia coli MS 84-1]
 gi|301304416|ref|ZP_07210528.1| exonuclease [Escherichia coli MS 124-1]
 gi|300403376|gb|EFJ86914.1| exonuclease [Escherichia coli MS 84-1]
 gi|300840267|gb|EFK68027.1| exonuclease [Escherichia coli MS 124-1]
 gi|315257344|gb|EFU37312.1| exonuclease [Escherichia coli MS 85-1]
          Length = 220

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVN-PMSQLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|254519350|ref|ZP_05131406.1| helicase [Clostridium sp. 7_2_43FAA]
 gi|226913099|gb|EEH98300.1| helicase [Clostridium sp. 7_2_43FAA]
          Length = 872

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 8/172 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   IVFD+E+TG D   D II+I A+++  Y +   +F+ FL    +K+   + K+HG 
Sbjct: 494 QDNIIVFDVESTGTDVTEDEIIQIAAIKINKYGEVIDSFEKFLKN--KKSVESSFKVHGF 551

Query: 66  TDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +DEFL +K      +  EF DF   + A  + HN ++D+  +N+EL R N D        
Sbjct: 552 SDEFLNEKGEDKKKVLKEFIDF--SKGAVIVGHNVQYDINILNSELYRNNLDGTKFKAFY 609

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DTL I RR + S     L +L K +     ++  H A+ D    SD+ ++ +
Sbjct: 610 DTLDIYRRFYTSLPNYKLETLSKIF--ETKNKPSHDAMDDILATSDLLVRAI 659


>gi|294636395|ref|ZP_06714781.1| ribonuclease T [Edwardsiella tarda ATCC 23685]
 gi|291090340|gb|EFE22901.1| ribonuclease T [Edwardsiella tarda ATCC 23685]
          Length = 221

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G D+  + ++EI AV L      + +T++     + P  G   SP
Sbjct: 13  RFRGFYPVVIDVETAGFDANRNALLEIAAVTLRMNDAGWLETDQCLHFHIEPFEGAILSP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        +Q    A  +AHNA FD  F+ A 
Sbjct: 73  EALAFNGIDPHNPLRGAVSEYEALHAIFKVVRKGIKDQECNRAVIVAHNAHFDHSFLMAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L   C    I       H AL D+   
Sbjct: 133 AERAKLKRNPFHPFATFDTAALSGLVL--GQTVLAKACISAEIPFDSSQAHSALYDTQQT 190

Query: 168 SDVYIKMMVGGSQIN 182
           + ++ +++    ++ 
Sbjct: 191 ALLFCELVNRWKRLG 205


>gi|189485715|ref|YP_001956656.1| DNA polymerase III epsilon subunit [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287674|dbj|BAG14195.1| DNA polymerase III epsilon subunit [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 198

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 9/162 (5%)

Query: 3   RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +K     +  DIETTGLD  K   I+EI  +++         ++  + P G     E  K
Sbjct: 12  KKLPDNLVFLDIETTGLDPEKGANIVEIAMLKVCGG--IEERYESLVNP-GLPIPSECSK 68

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H I D+ +K+ PSF  I    + F     +  + HNA FD+ F+  EL      P+   
Sbjct: 69  IHAIYDDMIKNSPSFDEIAGNVFSFIGH--SVVVCHNAPFDLLFVYRELYLAGV-PVKNI 125

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           R IDTL +AR+      N L ++    GI    R  H A+ D
Sbjct: 126 RYIDTLKLARQYFSFDSNKLGNIADAIGIEAELR--HRAMAD 165


>gi|223946833|gb|ACN27500.1| unknown [Zea mays]
 gi|224030613|gb|ACN34382.1| unknown [Zea mays]
          Length = 315

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 85/180 (47%), Gaps = 19/180 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG   ++DRIIE    +L+     N TFQ  + P       +   +HGI + 
Sbjct: 115 ILVFDIETTGFSRRDDRIIEFAVRDLMGGK--NSTFQTLINPEK---DVKNTYVHGINNS 169

Query: 69  FL--KDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP 120
            L   D P F  I      +      + +   W+AHN + FDV F+  E +R   +    
Sbjct: 170 MLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGD 229

Query: 121 SRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DTL IA++   S+ + L+S     L +RY I ++  S H A+ D   LS V  K+ 
Sbjct: 230 WLFVDTLPIAKQLVDSNGSKLSSVSLKFLRERYKIPLTG-SAHRAMQDVTTLSYVLQKLT 288


>gi|195646046|gb|ACG42491.1| DNA polymerase III subunit epsilon [Zea mays]
          Length = 315

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 85/180 (47%), Gaps = 19/180 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG   ++DRIIE    +L+     N TFQ  + P       +   +HGI + 
Sbjct: 115 ILVFDIETTGFSRRDDRIIEFAVRDLMGGK--NSTFQTLINPEK---DVKNTYVHGINNS 169

Query: 69  FL--KDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP 120
            L   D P F  I      +      + +   W+AHN + FDV F+  E +R   +    
Sbjct: 170 MLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGD 229

Query: 121 SRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DTL IA++   S+ + L+S     L +RY I ++  S H A+ D   LS V  K+ 
Sbjct: 230 WLFVDTLPIAKQLVDSNGSKLSSVSLKFLRERYKIPLTG-SAHRAMQDVTTLSYVLQKLT 288


>gi|199598401|ref|ZP_03211820.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001]
 gi|258508490|ref|YP_003171241.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
           rhamnosus GG]
 gi|199590720|gb|EDY98807.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001]
 gi|257148417|emb|CAR87390.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus
           rhamnosus GG]
 gi|259649800|dbj|BAI41962.1| DNA helicase [Lactobacillus rhamnosus GG]
          Length = 933

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 85/207 (41%), Gaps = 13/207 (6%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K  DR+I+ G   L+ + K  +T    + P+ R       +L GI+ 
Sbjct: 7   FAVVDLETTGTSVKDGDRMIQFGC-ALVRHGKIIQTISQMINPD-RSVPQTIQRLTGISP 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L   P F  +         +    ++AHN  FD  F+NAE +RI    L     IDT+
Sbjct: 65  ERLVAAPYFDEVAPALHQVLTK--TVFVAHNVNFDYPFLNAEFERIGLPKLQL-EAIDTV 121

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI----N 182
            +A+   P  S   L+ L   + I   H + H A  D+   + + +++      +     
Sbjct: 122 ELAQVLLPEISSFRLSDLTTHFAIQ--HDNPHQADSDATSTAKLLLQLKARFQALPTPTQ 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRD 209
                  D F +E    +  I+   R 
Sbjct: 180 QALIQRHDGFIRETGDYLKMIASPPRP 206


>gi|26987821|ref|NP_743246.1| ribonuclease T [Pseudomonas putida KT2440]
 gi|37999414|sp|Q88NW8|RNT_PSEPK RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|24982520|gb|AAN66710.1|AE016299_6 ribonuclease T [Pseudomonas putida KT2440]
          Length = 203

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV +    K       T+   + P  G    P AL+  
Sbjct: 10  PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGANIEPAALEFT 69

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI  D  L+   S  S  ++              + A  + HN+ FD+GF+NA + R  +
Sbjct: 70  GIKLDHPLRMAVSEESAMTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARNDL 129

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+   I    R  H A  D+   ++++  
Sbjct: 130 KRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTAELFCG 187

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 188 IVNRWKEMG 196


>gi|226943525|ref|YP_002798598.1| ribonuclease T [Azotobacter vinelandii DJ]
 gi|226718452|gb|ACO77623.1| ribonuclease T [Azotobacter vinelandii DJ]
          Length = 202

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN---RTFQVF-LCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI A+ +    +          F + P  G      AL+  
Sbjct: 10  PVVVDVETGGFNSATDALLEIAAITIGMDEQGLLFPEHSHFFRVEPFEGANIEAAALEFT 69

Query: 64  GI-TDEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRI-- 113
           GI  D  L+   S      E +            + A  + HN+ FD+ F+NA + R   
Sbjct: 70  GIKLDHPLRMAVSEEHALQEIFRGVRKAVKSHGCKRAILVGHNSSFDLAFLNAAVARCDI 129

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  
Sbjct: 130 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQSAGIEFDGREAHSARYDTEKTAELFCG 187

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 188 IVNRWKEMG 196


>gi|327439003|dbj|BAK15368.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046]
          Length = 251

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 12/169 (7%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V DIETTG   ++ D+I+EI A+++  + +T   F  F+ P       +   +HGIT+
Sbjct: 87  YVVVDIETTGGSAARGDKIVEIAALKIR-HGETVDLFHRFVNPEK---PIKNSHIHGITN 142

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRIIDT 126
           E +KD+ + S +   F  F    +   ++H+  FD   F+  E  R    P +P+    T
Sbjct: 143 ERVKDEQTISPVIHAFKAFLG--DLPIVSHHIGFDWYSFLALEFFRNGIRPTNPAA--CT 198

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +AR+   S RN+LN + + Y I + +   H A  D+   +++   +M
Sbjct: 199 VLLARKYLDSPRNNLNVIAETYNIPLLNH--HTADADAICANEILQLIM 245


>gi|309702068|emb|CBJ01382.1| exodeoxyribonuclease X [Escherichia coli ETEC H10407]
 gi|323937102|gb|EGB33382.1| exonuclease [Escherichia coli E1520]
          Length = 220

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|187734182|ref|YP_001880647.1| exodeoxyribonuclease X [Shigella boydii CDC 3083-94]
 gi|187431174|gb|ACD10448.1| exodeoxyribonuclease X [Shigella boydii CDC 3083-94]
          Length = 220

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|82543665|ref|YP_407612.1| exodeoxyribonuclease X [Shigella boydii Sb227]
 gi|81245076|gb|ABB65784.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|320177515|gb|EFW52509.1| Exodeoxyribonuclease X [Shigella dysenteriae CDC 74-1112]
 gi|320183242|gb|EFW58099.1| Exodeoxyribonuclease X [Shigella flexneri CDC 796-83]
 gi|332096685|gb|EGJ01676.1| exonuclease family protein [Shigella boydii 3594-74]
          Length = 220

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|323186850|gb|EFZ72169.1| exonuclease family protein [Escherichia coli RN587/1]
          Length = 220

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|193215454|ref|YP_001996653.1| DNA polymerase III subunit epsilon [Chloroherpeton thalassium ATCC
           35110]
 gi|193088931|gb|ACF14206.1| DNA polymerase III, epsilon subunit [Chloroherpeton thalassium ATCC
           35110]
          Length = 229

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 16/178 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +VFD ETTGLD K D+II IGAV + D++     +F+  +         E++ +HGI 
Sbjct: 43  RFVVFDTETTGLDVKKDKIISIGAVAISDFAIQVADSFETLIRQE-ASGDKESIPVHGIL 101

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + L    +       F  +     +  +AH+A FD+  +N  L R   D    + +IDT
Sbjct: 102 KKDLAMAATEQGALESFLSYIA--GSVLVAHHAMFDIEILNQALGRF-FDLKIFNAVIDT 158

Query: 127 LSIARRKHPS---------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              A+R                 L+ LC+RY I I  R  H A  D+ + + ++  ++
Sbjct: 159 ADFAKRIEKGPFSSQDTKAGDYSLDKLCERYRIPIYDR--HTAPGDAFITAQLFQILL 214


>gi|76798115|ref|ZP_00780369.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae 18RS21]
 gi|76586523|gb|EAO63027.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae 18RS21]
          Length = 740

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K   +  V D+E TG       I     +   +  K   +++  + P+        +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P F  +    +     ++  ++AHN KFD   +  +L     +   P
Sbjct: 72  HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTP 129

Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              IDT+ +++  +P   +  L +L +   I ++    H A+ D+   + ++IK+    S
Sbjct: 130 --RIDTVELSQVFYPCLEKYSLGALAESLNIELTD--AHTAIADARATAQLFIKLKAKIS 185

Query: 180 QI 181
            +
Sbjct: 186 SL 187


>gi|93006690|ref|YP_581127.1| ribonuclease T [Psychrobacter cryohalolentis K5]
 gi|92394368|gb|ABE75643.1| RNAse T [Psychrobacter cryohalolentis K5]
          Length = 246

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 20/191 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R  K   +V D+ET G +++ D ++EI  + +L   +        F   + P  G    P
Sbjct: 33  RFRKFLPVVVDVETAGFNAQTDALLEIACIPVLLNEQGVFYPGEAFNAHIEPFEGANLEP 92

Query: 58  EALKLHGIT-DEFLKDKPSFSS---------IFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            AL   GI  +  L+   +               E     + +    I HNA FD+ F+N
Sbjct: 93  SALAFTGIDPNNPLRKAIAEDEKTALRRIFKGLKEVRRIEDCRQCVLIGHNAHFDLAFLN 152

Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A + R N    +P     + DT++++       +  L   CK  G+       H AL D+
Sbjct: 153 AAVLRTNNKSHNPFHNFSVFDTVTLSALAF--GQTVLARACKAAGLDFDGNDAHSALYDT 210

Query: 165 HLLSDVYIKMM 175
              ++++  ++
Sbjct: 211 QKTAELFCYIL 221


>gi|309807500|ref|ZP_07701459.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
 gi|308169250|gb|EFO71309.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
          Length = 234

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 9/171 (5%)

Query: 7   MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M   V D+ETTG   K +DRII+ G   + D   T +T+   + P  +        L GI
Sbjct: 2   MFFAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +++      +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + ID
Sbjct: 60  SNQEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAID 116

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ +A+   P+     L  +     I   H + H A  D+ + + + +K++
Sbjct: 117 TVELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKII 165


>gi|55820864|ref|YP_139306.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55736849|gb|AAV60491.1| ATP-dependent DNA helicase, truncated [Streptococcus thermophilus
           LMG 18311]
          Length = 557

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K+  +  + D+E T   S    II++G V + +    +  F   + P+ +K     +
Sbjct: 12  MSEKSTNKYAIVDLEATSASS-TACIIQVGIVIMQNGRVIDE-FASDVNPH-QKLDNHIV 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P FS I    ++    ++  ++AHN KFD   +   L     +   P
Sbjct: 69  HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLLAEALFMEGFELRTP 126

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +DT+ +A+  +P+  + +L+ L +   + ++    H A+ D+     + + +M   +
Sbjct: 127 --RVDTVELAQVFYPTLEQYNLSYLSRVLNLDLA--QAHTAIEDARATGKLLLHLMDKIA 182

Query: 180 QI 181
            +
Sbjct: 183 SL 184


>gi|240143784|ref|ZP_04742385.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
 gi|257204219|gb|EEV02504.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
          Length = 228

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 4/170 (2%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + + FD ETTGLD + D+IIE+ A  + +     +       P G K   + ++L  ITD
Sbjct: 6   KIVFFDTETTGLDPEKDQIIELAAALVTENGIELKIDAFCKLPEGEKIPEKIVELTHITD 65

Query: 68  EFLKDK-PSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDPS-RII 124
           + L DK   +      F +  +  +    +AHN +FD+ FI    +R    P  P  R +
Sbjct: 66  DMLADKGIDYREACRIFCNMLHSDSEVLLVAHNIQFDLLFILEMFKRCGMVPKAPKLRAL 125

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           D+L++ + +  +  + L +  + YG+    ++ H A+ D   L +V   M
Sbjct: 126 DSLTVYKDRA-AYPHKLANAIEHYGLADKVQNSHRAIDDVLALYEVTKAM 174


>gi|309807268|ref|ZP_07701238.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166328|gb|EFO68537.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
          Length = 233

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K +DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +    +N  ++AHN  FD+ F+N EL      P D  + IDT+
Sbjct: 69  QEAAKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFD-GKAIDTV 125

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +A+   P+     L  +     I   H + H A  D+ + + + +K++
Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKII 172


>gi|241767097|ref|ZP_04764869.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
 gi|241362329|gb|EER58323.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
          Length = 153

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 65/159 (40%), Gaps = 9/159 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
                V D ETTG+   +  R  E+  V LLD       FQ  +   G    P   +L G
Sbjct: 2   PQPIAVIDFETTGMGPGQGARATEVAIV-LLDNGVVVDRFQSLMK-TGAWIPPFITQLTG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+  +   P  +++  E   F    NA  +AHNA FD  F  AEL         P    
Sbjct: 60  ITNAMVNAAPQAAAVMREAARFVG--NAPMVAHNAAFDRKFWQAELALAGLPAPHPFA-- 115

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALL 162
            T+ ++RR +P    + L  L   +G+  +    H AL 
Sbjct: 116 CTVLLSRRLYPQAPSHKLGMLVDYHGLPRTG-QAHRALA 153


>gi|46198514|ref|YP_004181.1| hypothetical protein TTC0206 [Thermus thermophilus HB27]
 gi|55980543|ref|YP_143840.1| DNA polymerase III subunit epsilon [Thermus thermophilus HB8]
 gi|46196136|gb|AAS80554.1| hypothetical conserved protein [Thermus thermophilus HB27]
 gi|55771956|dbj|BAD70397.1| probable DNA polymerase III epsilon subunit [Thermus thermophilus
           HB8]
          Length = 247

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 14/173 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL    D +IE+G + L    +    FQ  + P+ R  SP   +L GI  E 
Sbjct: 74  VVLDLETTGLAPGLDEVIEVGLLRLEGGRRL--PFQSLVRPS-RPPSPFVERLTGIPREA 130

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L++ PS   +  + +      +A  + HNA FD+GF+   L+ +     +P  ++D+L +
Sbjct: 131 LEEAPSLEEVLEKAYPLLA--DATLVIHNAAFDLGFLRPALEGLGYRLENP--VVDSLRL 186

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL----SDVYIKMMVG 177
           ARR  P   R  L++L +   + +  R+ H AL D         +VY  +  G
Sbjct: 187 ARRGLPGLRRYGLDALSEV--LELPRRTCHRALEDVERTLAVVHEVYYMLTSG 237


>gi|330950000|gb|EGH50260.1| ribonuclease T [Pseudomonas syringae Cit 7]
          Length = 225

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV +    K       T+   + P  G      AL+  
Sbjct: 32  PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFT 91

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
           GI  D  L+   S  +  ++              + A  + HNA FD+GF+NA + R+  
Sbjct: 92  GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  
Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 210 IVNRWKEMG 218


>gi|94499178|ref|ZP_01305716.1| ribonuclease T [Oceanobacter sp. RED65]
 gi|94428810|gb|EAT13782.1| ribonuclease T [Oceanobacter sp. RED65]
          Length = 222

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 18/205 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S+ D ++EI  V +    +            + P  G      AL   
Sbjct: 18  PVVVDVETAGFNSQTDALLEIAMVIMDMDEQGNMLPGPAMSAHIKPFEGANLEQSALDFT 77

Query: 64  GIT--DEFLK---DKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113
           GI   D   +   + P+   +F         +       + HNA FD+GF+NA ++R  I
Sbjct: 78  GIDPFDPDRRAEDEGPALKDMFKTIRKAMKVKGCKRAILVGHNAHFDLGFLNAAIERNNI 137

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++          L   CK  GI   + S H AL D+   ++++  
Sbjct: 138 KRSPFHPFSGFDTATLSGLAL--GHTVLARSCKLAGIDFDNHSAHSALYDTQKTAELFAL 195

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKK 198
           ++    Q+  G+    ++  KE +K
Sbjct: 196 IVNKWKQLG-GWDWAYEQHVKENEK 219


>gi|82548268|gb|ABB82959.1| putative DNA polymerase type III, exonuclease domain [uncultured
           organism HF70_19B12]
          Length = 270

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 10/214 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   +  + + FD ETTGL+ + DRI++   +   +D S   +     + P G K    +
Sbjct: 1   MSLFDGFKVLGFDTETTGLNPRKDRILQYAFIGRDVDGSSVCQV--ELIDP-GIKIPEAS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
           + +HGI++E +  + SF    ++  +  +   A  + HN   FD  FI  E  R+ +   
Sbjct: 58  MNVHGISNEDVTGRGSFGMHSNDIAELID--GAIIVGHNINAFDWRFIEFEFMRVGEAVP 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG- 177
            P  ++DTL +AR      R+ L  LCKRYGI +     H A  D+     +  KM+ G 
Sbjct: 116 SPYALVDTLELARGLRIPGRHTLGHLCKRYGIGLD--RAHSADADAAATLILLWKMIEGN 173

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
            S +  G +  +D   +  K +      L+R  P
Sbjct: 174 QSILEDGLEGIQDLCNRNRKSSSIRKEGLRRVLP 207


>gi|124005083|ref|ZP_01689925.1| exonuclease [Microscilla marina ATCC 23134]
 gi|123989335|gb|EAY28896.1| exonuclease [Microscilla marina ATCC 23134]
          Length = 245

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 10/168 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K   + FD+ETTG D+ NDRI++I  ++   D +K  +  +  + P      PE  K+HG
Sbjct: 4   KKPIVFFDLETTGTDTLNDRIVQIAIIKLAADGTKVEK--ERLINPTI-PIPPEVTKVHG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RI 123
           ++DE +KD P+F  +    ++F    +     H   FD+  +  E  R      +P  + 
Sbjct: 61  VSDEMVKDAPTFHQVAKSLFEFIRGCDLAGYNH-LNFDMPLLIEEFARAGVVFPEPDVQY 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           ID + +    HP     L++  + Y       + H A+ D+    +++
Sbjct: 120 IDVMKVYYHFHP---RTLSAAYQLY-CHKELENAHNAMADTQATLEIF 163


>gi|288800441|ref|ZP_06405899.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332654|gb|EFC71134.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
          Length = 285

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 95/224 (42%), Gaps = 15/224 (6%)

Query: 2   IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  R  +VFD+ETTGLD  NDRII+I  +++    K  R   +F+ P  +    E  
Sbjct: 1   MKLNLQRPLVVFDLETTGLDLVNDRIIQISYIKVHPDGKEERE-NLFINPQ-KPIPQEVE 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
            L  IT++ +KD P+F+ I  + ++       ++   N   FD+  +  E  R       
Sbjct: 59  ALTHITNDMVKDAPTFAEIAQKLYE--KFTGCDFAGFNSNHFDIPMLAEEFSRAGLSYDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYIKMMV 176
             S+++D   I    H   R +L +  K Y G  +    + H A  D+     V   +M 
Sbjct: 117 SRSKLVDAQVI---FHKMERRNLAAAYKFYCGRKMEDDFNAHRADEDTEATYRV---LMG 170

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
              + +   +   +R    +   +   S   R+     RI  +E
Sbjct: 171 QIERYSAEQQEEAERILPNDIAALAEFSTNNRNVDFAGRIVWKE 214


>gi|308177615|ref|YP_003917021.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis
           Re117]
 gi|307745078|emb|CBT76050.1| putative DNA polymerase III subunit epsilon [Arthrobacter
           arilaitensis Re117]
          Length = 412

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 94/251 (37%), Gaps = 23/251 (9%)

Query: 11  VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + D ETTGL    NDRI EI  V +        +++  + P  R    ++  +H I    
Sbjct: 8   IVDTETTGLFPGGNDRIAEIAIVTMNRQGTIVDSWETLINPQ-RDLGKQS--IHRIQSRD 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDTL 127
           + D PSF  +  E     +      +AHN  FD  F+ AE ++      +    + + T+
Sbjct: 65  VLDAPSFKDLAEELHWRLS--GTVLVAHNLSFDSRFLEAEFRKCGLPVPETFLAQGMCTM 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            ++ R    +   L   C  +GI +  +  H A+ D+   + +  + M            
Sbjct: 123 RMSHRYLQGAGRSLQDCCDSFGIDL--QQAHSAVGDATATATLLSRYMELDPDEPEWDGR 180

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITK----EELDEH---------DKTIQTLGKN 234
                      ++P   +    +  +   +     E+L            ++    +   
Sbjct: 181 LRLAAAGRWFDSMPRSRVAPVKRSQYRTESAGHFLEKLAARLPEFSGTATEENYFAVLDL 240

Query: 235 AIWDRYISSNQ 245
           A+ DRY+S+++
Sbjct: 241 ALMDRYVSAHE 251


>gi|139439869|ref|ZP_01773234.1| Hypothetical protein COLAER_02268 [Collinsella aerofaciens ATCC
           25986]
 gi|133774797|gb|EBA38617.1| Hypothetical protein COLAER_02268 [Collinsella aerofaciens ATCC
           25986]
          Length = 964

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 12/179 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D ETTGL  +++ +IEI A  L      +R F  F+ P  +    E  +L  IT+  
Sbjct: 39  IVLDTETTGLSVQDNELIEISAARLSGREVVDR-FDTFVHPK-QLIPAEITELTSITNAD 96

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D PS     +   DF        IAHNA FD  FI +    +N   +     ID+L++
Sbjct: 97  VADAPSAVEAVAALADFVG--GCPVIAHNATFDRSFIESVKGGVNVSDI----WIDSLAL 150

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +R   P  + + L+ +   +G        H A  D   L  V+  ++V  + +  G   
Sbjct: 151 SRIALPRLASHKLSFMADLFGCD---SVSHRANADVDALCGVWRVLLVALTDLPQGLMA 206


>gi|30063256|ref|NP_837427.1| exodeoxyribonuclease X [Shigella flexneri 2a str. 2457T]
 gi|56479974|ref|NP_707706.2| exodeoxyribonuclease X [Shigella flexneri 2a str. 301]
 gi|30041508|gb|AAP17236.1| hypothetical protein S1920 [Shigella flexneri 2a str. 2457T]
 gi|56383525|gb|AAN43413.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|281601259|gb|ADA74243.1| Exodeoxyribonuclease 10 [Shigella flexneri 2002017]
 gi|313650662|gb|EFS15064.1| exonuclease family protein [Shigella flexneri 2a str. 2457T]
 gi|332757646|gb|EGJ87979.1| exonuclease family protein [Shigella flexneri 2747-71]
 gi|332758031|gb|EGJ88357.1| exonuclease family protein [Shigella flexneri K-671]
 gi|332766817|gb|EGJ97018.1| exonuclease family protein [Shigella flexneri 2930-71]
 gi|333018617|gb|EGK37911.1| exonuclease family protein [Shigella flexneri K-304]
          Length = 220

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N    + + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVN-PMSLLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITIS---HRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGLKYSNMALYKTRKLNVQTPLGLHHHRALYDCYITAALLIDIM 151


>gi|167753685|ref|ZP_02425812.1| hypothetical protein ALIPUT_01966 [Alistipes putredinis DSM 17216]
 gi|167658310|gb|EDS02440.1| hypothetical protein ALIPUT_01966 [Alistipes putredinis DSM 17216]
          Length = 257

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 14/194 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   I FD+ETTG+D   DRI+EI  V+++ D  +  RT    + P G     EA
Sbjct: 1   MELNLKRPIIFFDLETTGIDIARDRIVEISMVKVMPDGEEIVRT--RRINP-GMPIPAEA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-P 117
             +HGITDE +KD P F  I      F   +  ++   N  +FD+  +  E  R   D  
Sbjct: 58  TAIHGITDEDVKDCPLFPQIAKSLAQFI--EGCDFGGFNSNRFDLPMLVEEFMRAGVDVD 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMV 176
               + ID  +I    H   +  L +  K Y G  ++    H A  D+    +V    + 
Sbjct: 116 FRKRKFIDVQNI---FHKMEQRTLVAAYKFYCGKDLAD--AHSAEADTLATYEVLKAQLD 170

Query: 177 GGSQINFGFKTNED 190
              ++        +
Sbjct: 171 RYGELQNDVAALAE 184


>gi|163849777|ref|YP_001637820.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           extorquens PA1]
 gi|163661382|gb|ABY28749.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           extorquens PA1]
          Length = 297

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 83/212 (39%), Gaps = 10/212 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ET   + + D    +G +  ++  +  R     + P   + SP  +++HGI 
Sbjct: 1   MKVVAIDFETA--NERRDSACAVG-LAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGIL 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P+F  + +EF    +      +AHNA FD+G + A L     +P+       T
Sbjct: 58  PADVRDAPTFPEVIAEFLP--DLSGGLMLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           L IARR  P    + L  +  R GI   H   H A  D+   +++ +  +      +   
Sbjct: 115 LQIARRVFPDPAGHGLAKVAGRLGIRFEH---HDAGEDAFACAEIALAALHETGAADIAD 171

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
                        T P   + +       R +
Sbjct: 172 LARGLGLTPIRALTTPRRDMTRSTSAKALRAS 203


>gi|213162306|ref|ZP_03348016.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 145

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 55/138 (39%), Positives = 81/138 (58%), Gaps = 11/138 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 10  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI DEFL DKP F+ +  EF D+   + AE + HNA FD+GF++ E   + +D    + 
Sbjct: 69  HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126

Query: 123 II---DTLSIARRKHPSS 137
                D+L++AR+  P  
Sbjct: 127 FCKVTDSLALARKIVPRQ 144


>gi|168216491|ref|ZP_02642116.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens NCTC 8239]
 gi|182381517|gb|EDT78996.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens NCTC 8239]
          Length = 870

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 8/175 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
              K   IVFD+E+TG+D   D II+I A++L    +    F+ FL    +K   ++  +
Sbjct: 498 EFEKENIIVFDVESTGVDVIEDEIIQIAAIKLNKKGEVVDKFEKFLKN--KKPVKDSYYV 555

Query: 63  HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           HG +DE L+        +  EF ++   + +  + HN ++D+  + +EL+R N       
Sbjct: 556 HGFSDEMLQKIGEDKEKVLKEFVEY--SKGSIIVGHNVQYDINILCSELERSNLGKPKFK 613

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              DTL I RR +P +    L +L   Y     H+  H A+ D     ++ ++ +
Sbjct: 614 TFYDTLDIYRRFYPGNINYKLENLSNVY--DTKHKPSHDAMDDIIATGELLVRAI 666


>gi|159899742|ref|YP_001545989.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892781|gb|ABX05861.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 927

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 13/175 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D+ETTGL+   D IIE+GAV+    ++   T+Q  + P  +    +  +L GI   
Sbjct: 5   YIALDLETTGLEPGRDEIIEVGAVKFR-GNEVLETYQTLVKPK-QVLPIKIARLTGIDAH 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P+F+SI  +   F        I H+   D+ F+  +  ++           DT  
Sbjct: 63  ELTTAPTFNSIGGQLAKFLKS--YPIIGHSVDNDLRFLQQQGLKV------TQPHYDTFD 114

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +A    P      L+++ +   I   H   H AL D+     V+  ++   ++++
Sbjct: 115 LATLLIPQLPNYSLSTIAEHLQIQ--HPDAHRALADAEASRLVFSALLDKLAELS 167


>gi|154343419|ref|XP_001567655.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134064987|emb|CAM43098.1| exonuclease-like protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 292

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 84/228 (36%), Gaps = 63/228 (27%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL---------------------------------D 36
           +V D+ETTG     D I+E+G VEL                                   
Sbjct: 53  VVVDLETTGFSPTADEILEVGCVELRWTPSSRTTLTGPKDADPCAPPLEKQGSCGVLEGL 112

Query: 37  YSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA--- 92
           +++  R F  ++ P + R+ +  A  +HGIT E ++    +  + SE   +     A   
Sbjct: 113 WTRGGRVFHRYVRPSHPRRITAAATAVHGITWEKVQHCAPWPVVASELVAYMTLIRADAL 172

Query: 93  ---------------------EWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTLSI 129
                                  +AHNA FD  F+   LQR         +     T   
Sbjct: 173 FTKSVQVEAAQHGGHSAVHLPPLVAHNALFDARFLAHHLQRCGYQIFWHPQYPLTCTRQW 232

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSK---HGALLDSHLLSDVYIKM 174
           A+  +P   N+L++LC    I  +       HGAL D+ L + ++++M
Sbjct: 233 AQVAYPHLANNLDTLCAFLSIDGAADRATNGHGALTDATLTALLFLRM 280


>gi|310767562|gb|ADP12512.1| ribonuclease T [Erwinia sp. Ejp617]
          Length = 219

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G D+K + ++EI AV L      +   + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLGKDDTLHFHVEPFAGSVLLP 72

Query: 58  EALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109
           EAL  +GI     L+   S        +              A  +AHNA FD+ F+NA 
Sbjct: 73  EALTFNGIDPTNPLRGAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT +++       +  L   C   G+       H AL D+   
Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLAKACHAAGMAFDSAQAHSALYDTLQT 190

Query: 168 SDVYIKMMVGGSQIN 182
           +D++ +++    ++ 
Sbjct: 191 ADLFCELVNRWKRLG 205


>gi|16129797|ref|NP_416358.1| DNA exonuclease X [Escherichia coli str. K-12 substr. MG1655]
 gi|74311833|ref|YP_310252.1| exodeoxyribonuclease X [Shigella sonnei Ss046]
 gi|82776429|ref|YP_402778.1| exodeoxyribonuclease X [Shigella dysenteriae Sd197]
 gi|89108684|ref|AP_002464.1| DNA exonuclease X [Escherichia coli str. K-12 substr. W3110]
 gi|91211067|ref|YP_541053.1| exodeoxyribonuclease X [Escherichia coli UTI89]
 gi|110641962|ref|YP_669692.1| exodeoxyribonuclease X [Escherichia coli 536]
 gi|117623997|ref|YP_852910.1| exodeoxyribonuclease X [Escherichia coli APEC O1]
 gi|157159299|ref|YP_001463146.1| exodeoxyribonuclease X [Escherichia coli E24377A]
 gi|161486210|ref|NP_754148.2| exodeoxyribonuclease X [Escherichia coli CFT073]
 gi|170081500|ref|YP_001730820.1| DNA exonuclease X [Escherichia coli str. K-12 substr. DH10B]
 gi|170681411|ref|YP_001743401.1| exodeoxyribonuclease X [Escherichia coli SMS-3-5]
 gi|188495324|ref|ZP_03002594.1| exodeoxyribonuclease X [Escherichia coli 53638]
 gi|191168492|ref|ZP_03030279.1| exodeoxyribonuclease X [Escherichia coli B7A]
 gi|191172968|ref|ZP_03034502.1| exodeoxyribonuclease X [Escherichia coli F11]
 gi|193066046|ref|ZP_03047103.1| exodeoxyribonuclease X [Escherichia coli E22]
 gi|194429668|ref|ZP_03062186.1| exodeoxyribonuclease X [Escherichia coli B171]
 gi|194439062|ref|ZP_03071145.1| exodeoxyribonuclease X [Escherichia coli 101-1]
 gi|209919210|ref|YP_002293294.1| exodeoxyribonuclease X [Escherichia coli SE11]
 gi|218554418|ref|YP_002387331.1| exodeoxyribonuclease X [Escherichia coli IAI1]
 gi|218558708|ref|YP_002391621.1| exodeoxyribonuclease X [Escherichia coli S88]
 gi|218689782|ref|YP_002397994.1| exodeoxyribonuclease X [Escherichia coli ED1a]
 gi|218695410|ref|YP_002403077.1| exodeoxyribonuclease X [Escherichia coli 55989]
 gi|218699585|ref|YP_002407214.1| exodeoxyribonuclease X [Escherichia coli IAI39]
 gi|218705343|ref|YP_002412862.1| exodeoxyribonuclease X [Escherichia coli UMN026]
 gi|227885729|ref|ZP_04003534.1| exodeoxyribonuclease X [Escherichia coli 83972]
 gi|237705796|ref|ZP_04536277.1| exodeoxyribonuclease X [Escherichia sp. 3_2_53FAA]
 gi|238901059|ref|YP_002926855.1| DNA exonuclease X [Escherichia coli BW2952]
 gi|256017967|ref|ZP_05431832.1| exodeoxyribonuclease X [Shigella sp. D9]
 gi|256022492|ref|ZP_05436357.1| exodeoxyribonuclease X [Escherichia sp. 4_1_40B]
 gi|260844189|ref|YP_003221967.1| DNA exonuclease X [Escherichia coli O103:H2 str. 12009]
 gi|260855770|ref|YP_003229661.1| DNA exonuclease X [Escherichia coli O26:H11 str. 11368]
 gi|260868365|ref|YP_003234767.1| DNA exonuclease X [Escherichia coli O111:H- str. 11128]
 gi|291283026|ref|YP_003499844.1| Exodeoxyribonuclease 10 [Escherichia coli O55:H7 str. CB9615]
 gi|293405339|ref|ZP_06649331.1| exodeoxyribonuclease X [Escherichia coli FVEC1412]
 gi|293410154|ref|ZP_06653730.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293415159|ref|ZP_06657802.1| exodeoxyribonuclease X [Escherichia coli B185]
 gi|293446216|ref|ZP_06662638.1| exodeoxyribonuclease X [Escherichia coli B088]
 gi|298380980|ref|ZP_06990579.1| exodeoxyribonuclease X [Escherichia coli FVEC1302]
 gi|300816266|ref|ZP_07096488.1| exonuclease [Escherichia coli MS 107-1]
 gi|300824216|ref|ZP_07104334.1| exonuclease [Escherichia coli MS 119-7]
 gi|300899088|ref|ZP_07117373.1| exonuclease [Escherichia coli MS 198-1]
 gi|300917583|ref|ZP_07134236.1| exonuclease [Escherichia coli MS 115-1]
 gi|300924914|ref|ZP_07140845.1| exonuclease [Escherichia coli MS 182-1]
 gi|300928872|ref|ZP_07144378.1| exonuclease [Escherichia coli MS 187-1]
 gi|300951460|ref|ZP_07165297.1| exonuclease [Escherichia coli MS 116-1]
 gi|300956649|ref|ZP_07168925.1| exonuclease [Escherichia coli MS 175-1]
 gi|300982052|ref|ZP_07175871.1| exonuclease [Escherichia coli MS 200-1]
 gi|300994204|ref|ZP_07180761.1| exonuclease [Escherichia coli MS 45-1]
 gi|301025418|ref|ZP_07188970.1| exonuclease [Escherichia coli MS 196-1]
 gi|301050807|ref|ZP_07197661.1| exonuclease [Escherichia coli MS 185-1]
 gi|301327607|ref|ZP_07220824.1| exonuclease [Escherichia coli MS 78-1]
 gi|306814328|ref|ZP_07448494.1| exodeoxyribonuclease X [Escherichia coli NC101]
 gi|307138504|ref|ZP_07497860.1| exodeoxyribonuclease X [Escherichia coli H736]
 gi|307314078|ref|ZP_07593690.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W]
 gi|309789238|ref|ZP_07683831.1| exonuclease family protein [Shigella dysenteriae 1617]
 gi|309794224|ref|ZP_07688648.1| exonuclease [Escherichia coli MS 145-7]
 gi|312969882|ref|ZP_07784065.1| exonuclease family protein [Escherichia coli 1827-70]
 gi|331642455|ref|ZP_08343590.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H736]
 gi|331653250|ref|ZP_08354255.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M718]
 gi|331668536|ref|ZP_08369384.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA271]
 gi|331673376|ref|ZP_08374144.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA280]
 gi|331677723|ref|ZP_08378398.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H591]
 gi|331683348|ref|ZP_08383949.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H299]
 gi|332279002|ref|ZP_08391415.1| exodeoxyribonuclease X [Shigella sp. D9]
 gi|84027958|sp|P0AEK1|EXOX_ECOL6 RecName: Full=Exodeoxyribonuclease 10; AltName:
           Full=Exodeoxyribonuclease X; Short=Exo X;
           Short=Exonuclease X
 gi|84027959|sp|P0AEK0|EXOX_ECOLI RecName: Full=Exodeoxyribonuclease 10; AltName:
           Full=Exodeoxyribonuclease X; Short=Exo X;
           Short=Exonuclease X
 gi|6166471|gb|AAF04847.1|AF194116_1 exonuclease X [Escherichia coli]
 gi|1788149|gb|AAC74914.1| DNA exonuclease X [Escherichia coli str. K-12 substr. MG1655]
 gi|73855310|gb|AAZ88017.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81240577|gb|ABB61287.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|85675148|dbj|BAE76547.1| DNA exonuclease X [Escherichia coli str. K12 substr. W3110]
 gi|91072641|gb|ABE07522.1| exodeoxyribonuclease X [Escherichia coli UTI89]
 gi|110343554|gb|ABG69791.1| exodeoxyribonuclease X [Escherichia coli 536]
 gi|115513121|gb|ABJ01196.1| exodeoxyribonuclease X [Escherichia coli APEC O1]
 gi|157081329|gb|ABV21037.1| exodeoxyribonuclease X [Escherichia coli E24377A]
 gi|169889335|gb|ACB03042.1| DNA exonuclease X [Escherichia coli str. K-12 substr. DH10B]
 gi|170519129|gb|ACB17307.1| exodeoxyribonuclease X [Escherichia coli SMS-3-5]
 gi|188490523|gb|EDU65626.1| exodeoxyribonuclease X [Escherichia coli 53638]
 gi|190901445|gb|EDV61207.1| exodeoxyribonuclease X [Escherichia coli B7A]
 gi|190906679|gb|EDV66284.1| exodeoxyribonuclease X [Escherichia coli F11]
 gi|192926283|gb|EDV80920.1| exodeoxyribonuclease X [Escherichia coli E22]
 gi|194412310|gb|EDX28614.1| exodeoxyribonuclease X [Escherichia coli B171]
 gi|194422021|gb|EDX38025.1| exodeoxyribonuclease X [Escherichia coli 101-1]
 gi|209767638|gb|ACI82131.1| exonuclease X [Escherichia coli]
 gi|209767644|gb|ACI82134.1| exonuclease X [Escherichia coli]
 gi|209912469|dbj|BAG77543.1| DNA exonuclease X [Escherichia coli SE11]
 gi|218352142|emb|CAU97881.1| DNA exonuclease X [Escherichia coli 55989]
 gi|218361186|emb|CAQ98770.1| DNA exonuclease X [Escherichia coli IAI1]
 gi|218365477|emb|CAR03204.1| DNA exonuclease X [Escherichia coli S88]
 gi|218369571|emb|CAR17340.1| DNA exonuclease X [Escherichia coli IAI39]
 gi|218427346|emb|CAR08241.2| DNA exonuclease X [Escherichia coli ED1a]
 gi|218432440|emb|CAR13333.1| DNA exonuclease X [Escherichia coli UMN026]
 gi|222033593|emb|CAP76334.1| exodeoxyribonuclease 10 [Escherichia coli LF82]
 gi|226900553|gb|EEH86812.1| exodeoxyribonuclease X [Escherichia sp. 3_2_53FAA]
 gi|227837302|gb|EEJ47768.1| exodeoxyribonuclease X [Escherichia coli 83972]
 gi|238860815|gb|ACR62813.1| DNA exonuclease X [Escherichia coli BW2952]
 gi|257754419|dbj|BAI25921.1| DNA exonuclease X [Escherichia coli O26:H11 str. 11368]
 gi|257759336|dbj|BAI30833.1| DNA exonuclease X [Escherichia coli O103:H2 str. 12009]
 gi|257764721|dbj|BAI36216.1| DNA exonuclease X [Escherichia coli O111:H- str. 11128]
 gi|260449035|gb|ACX39457.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli DH1]
 gi|281178912|dbj|BAI55242.1| DNA exonuclease X [Escherichia coli SE15]
 gi|284921762|emb|CBG34835.1| exodeoxyribonuclease X [Escherichia coli 042]
 gi|290762899|gb|ADD56860.1| Exodeoxyribonuclease 10 [Escherichia coli O55:H7 str. CB9615]
 gi|291323046|gb|EFE62474.1| exodeoxyribonuclease X [Escherichia coli B088]
 gi|291427547|gb|EFF00574.1| exodeoxyribonuclease X [Escherichia coli FVEC1412]
 gi|291432807|gb|EFF05786.1| exodeoxyribonuclease X [Escherichia coli B185]
 gi|291470622|gb|EFF13106.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294490108|gb|ADE88864.1| exodeoxyribonuclease X [Escherichia coli IHE3034]
 gi|298278422|gb|EFI19936.1| exodeoxyribonuclease X [Escherichia coli FVEC1302]
 gi|299880094|gb|EFI88305.1| exonuclease [Escherichia coli MS 196-1]
 gi|300297496|gb|EFJ53881.1| exonuclease [Escherichia coli MS 185-1]
 gi|300307354|gb|EFJ61874.1| exonuclease [Escherichia coli MS 200-1]
 gi|300316527|gb|EFJ66311.1| exonuclease [Escherichia coli MS 175-1]
 gi|300357297|gb|EFJ73167.1| exonuclease [Escherichia coli MS 198-1]
 gi|300406332|gb|EFJ89870.1| exonuclease [Escherichia coli MS 45-1]
 gi|300415183|gb|EFJ98493.1| exonuclease [Escherichia coli MS 115-1]
 gi|300418932|gb|EFK02243.1| exonuclease [Escherichia coli MS 182-1]
 gi|300449289|gb|EFK12909.1| exonuclease [Escherichia coli MS 116-1]
 gi|300463162|gb|EFK26655.1| exonuclease [Escherichia coli MS 187-1]
 gi|300523287|gb|EFK44356.1| exonuclease [Escherichia coli MS 119-7]
 gi|300530956|gb|EFK52018.1| exonuclease [Escherichia coli MS 107-1]
 gi|300845856|gb|EFK73616.1| exonuclease [Escherichia coli MS 78-1]
 gi|305852487|gb|EFM52938.1| exodeoxyribonuclease X [Escherichia coli NC101]
 gi|306906216|gb|EFN36733.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W]
 gi|307553862|gb|ADN46637.1| exodeoxyribonuclease X [Escherichia coli ABU 83972]
 gi|307626675|gb|ADN70979.1| exodeoxyribonuclease X [Escherichia coli UM146]
 gi|308122129|gb|EFO59391.1| exonuclease [Escherichia coli MS 145-7]
 gi|308922992|gb|EFP68506.1| exonuclease family protein [Shigella dysenteriae 1617]
 gi|310338167|gb|EFQ03256.1| exonuclease family protein [Escherichia coli 1827-70]
 gi|312946443|gb|ADR27270.1| exodeoxyribonuclease X [Escherichia coli O83:H1 str. NRG 857C]
 gi|315061147|gb|ADT75474.1| DNA exonuclease X [Escherichia coli W]
 gi|315136487|dbj|BAJ43646.1| exodeoxyribonuclease 10 [Escherichia coli DH1]
 gi|315286537|gb|EFU45972.1| exonuclease [Escherichia coli MS 110-3]
 gi|315290373|gb|EFU49749.1| exonuclease [Escherichia coli MS 153-1]
 gi|320194441|gb|EFW69072.1| Exodeoxyribonuclease X [Escherichia coli WV_060327]
 gi|320198024|gb|EFW72632.1| Exodeoxyribonuclease X [Escherichia coli EC4100B]
 gi|320641696|gb|EFX11084.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. G5101]
 gi|320647056|gb|EFX15889.1| exodeoxyribonuclease X [Escherichia coli O157:H- str. 493-89]
 gi|320652339|gb|EFX20637.1| exodeoxyribonuclease X [Escherichia coli O157:H- str. H 2687]
 gi|320657940|gb|EFX25702.1| exodeoxyribonuclease X [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320658513|gb|EFX26207.1| exodeoxyribonuclease X [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668411|gb|EFX35238.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. LSU-61]
 gi|323152600|gb|EFZ38877.1| exonuclease family protein [Escherichia coli EPECa14]
 gi|323158672|gb|EFZ44686.1| exonuclease family protein [Escherichia coli E128010]
 gi|323166600|gb|EFZ52360.1| exonuclease family protein [Shigella sonnei 53G]
 gi|323180624|gb|EFZ66169.1| exonuclease family protein [Escherichia coli 1180]
 gi|323186407|gb|EFZ71755.1| exonuclease family protein [Escherichia coli 1357]
 gi|323378276|gb|ADX50544.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli KO11]
 gi|323940489|gb|EGB36680.1| exonuclease [Escherichia coli E482]
 gi|323948271|gb|EGB44259.1| exonuclease [Escherichia coli H120]
 gi|323952346|gb|EGB48219.1| exonuclease [Escherichia coli H252]
 gi|323956475|gb|EGB52217.1| exonuclease [Escherichia coli H263]
 gi|323968612|gb|EGB64018.1| exonuclease [Escherichia coli M863]
 gi|323972649|gb|EGB67852.1| exonuclease [Escherichia coli TA007]
 gi|323977972|gb|EGB73058.1| exonuclease [Escherichia coli TW10509]
 gi|324007199|gb|EGB76418.1| exonuclease [Escherichia coli MS 57-2]
 gi|324012816|gb|EGB82035.1| exonuclease [Escherichia coli MS 60-1]
 gi|324018034|gb|EGB87253.1| exonuclease [Escherichia coli MS 117-3]
 gi|324118904|gb|EGC12793.1| exonuclease [Escherichia coli E1167]
 gi|327252967|gb|EGE64621.1| exonuclease family protein [Escherichia coli STEC_7v]
 gi|331039253|gb|EGI11473.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H736]
 gi|331049348|gb|EGI21420.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M718]
 gi|331063730|gb|EGI35641.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA271]
 gi|331069574|gb|EGI40961.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA280]
 gi|331074183|gb|EGI45503.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H591]
 gi|331079563|gb|EGI50760.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H299]
 gi|332101354|gb|EGJ04700.1| exodeoxyribonuclease X [Shigella sp. D9]
 gi|332343569|gb|AEE56903.1| exonuclease [Escherichia coli UMNK88]
          Length = 220

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|194433962|ref|ZP_03066234.1| exodeoxyribonuclease X [Shigella dysenteriae 1012]
 gi|194417834|gb|EDX33931.1| exodeoxyribonuclease X [Shigella dysenteriae 1012]
 gi|320182620|gb|EFW57509.1| Exodeoxyribonuclease X [Shigella boydii ATCC 9905]
 gi|332095285|gb|EGJ00309.1| exonuclease family protein [Shigella dysenteriae 155-74]
          Length = 220

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|237733311|ref|ZP_04563792.1| 3'-5' exonuclease [Mollicutes bacterium D7]
 gi|229383692|gb|EEO33783.1| 3'-5' exonuclease [Coprobacillus sp. D7]
          Length = 443

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ET   + +N+ I  IG +  +D      T    + P         ++L GIT E +
Sbjct: 7   FVDVETP--NYQNNSISSIGVI-NVDGDGVVTTKYFLVDPEAH-FDRFNIELTGITPEMV 62

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D+P+F  ++SE   +F   N+  +AHNA FD+G I+A LQR +  P+ P     T  I+
Sbjct: 63  ADQPNFKEVWSEIEPYF--TNSLVVAHNAVFDLGVISACLQRYDL-PIFPIFYTCTYRIS 119

Query: 131 RRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R    PS+   LN L   Y +T+ +   H AL DS    +++  ++
Sbjct: 120 RALKIPSNSYKLNDLSSYYHVTLDNH--HNALADSKACMEIFYYLL 163


>gi|227485452|ref|ZP_03915768.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227236582|gb|EEI86597.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 295

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 8/166 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I+ D+ETTGLD  NDRIIEIGA+++    K N+ +   +     K S +   + GI+DE
Sbjct: 129 YIIIDLETTGLDPINDRIIEIGAIKI---GKENKEYSSIIW-QDIKLSEKISNITGISDE 184

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K      +  +EF DF  E     + +N  FD+ FIN  L+R  K  +          
Sbjct: 185 DIKKGKDEKNAINEFIDFIGED--TLVGYNINFDIKFINESLKRQEKPKIKNMTYDVMQY 242

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +   K       L ++ K YGI       H AL D  ++  +  K+
Sbjct: 243 VKNDKLFLKNYKLETVIKEYGIN--KNVPHRALEDVKIIQKLIAKL 286


>gi|104780415|ref|YP_606913.1| ribonuclease T [Pseudomonas entomophila L48]
 gi|166200016|sp|Q1IE06|RNT_PSEE4 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|95109402|emb|CAK14102.1| ribonuclease T [Pseudomonas entomophila L48]
          Length = 224

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV +    K       T+   + P  G      AL+  
Sbjct: 31  PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFYRVEPFEGANIEAAALEFT 90

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI  D  L+   S  S  ++              + A  + HN+ FD+GF+NA + R  I
Sbjct: 91  GIKLDHPLRMAVSEESALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARNDI 150

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+   I    R  H A  D+   ++++  
Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTAELFCG 208

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 209 IVNRWKEMG 217


>gi|332090017|gb|EGI95117.1| exonuclease family protein [Shigella boydii 5216-82]
          Length = 220

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|329896219|ref|ZP_08271397.1| Ribonuclease T [gamma proteobacterium IMCC3088]
 gi|328921890|gb|EGG29257.1| Ribonuclease T [gamma proteobacterium IMCC3088]
          Length = 211

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 80/193 (41%), Gaps = 17/193 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSP 57
           R      ++ D+ET G +++ D ++E+ A  V +    +   + T    + P  G     
Sbjct: 13  RFRGFLPVIIDVETGGFNAQTDALLEVAATIVRMEPDGELYVHETVHHNVVPFEGANLEA 72

Query: 58  EALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
            AL+  GI       E L +  +  SIF          N      + HNA FD GFINA 
Sbjct: 73  SALEFTGIDPYHPFREALSEADALESIFKAIRKEIKSTNCTRAVLVGHNAHFDAGFINAA 132

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           ++R    ++P  P    DT ++A       +  L   C + GI   +++ H A  D+   
Sbjct: 133 VERTGLKRNPFHPFSYFDTATLAGLAF--GQTVLAKACLQAGIEFDNKAAHSAAYDADRT 190

Query: 168 SDVYIKMMVGGSQ 180
           + ++  ++    Q
Sbjct: 191 AHLFCNIVNIWRQ 203


>gi|283832758|ref|ZP_06352499.1| exodeoxyribonuclease 10 [Citrobacter youngae ATCC 29220]
 gi|291072441|gb|EFE10550.1| exodeoxyribonuclease 10 [Citrobacter youngae ATCC 29220]
          Length = 220

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVVDGKIVN-PMSNLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I  +++      +  ++AHNA FD   +          P  P   I T+ ++
Sbjct: 59  ADKPWIEDIIPQYY-----GSDWYVAHNASFDRRVL----------PEMPGEWICTMKLS 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   +++   +    H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPAGLHHHRALYDCYITAALLIDIM 151


>gi|257461276|ref|ZP_05626373.1| DNA polymerase III subunit epsilon [Campylobacter gracilis RM3268]
 gi|257441304|gb|EEV16450.1| DNA polymerase III subunit epsilon [Campylobacter gracilis RM3268]
          Length = 268

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 13/185 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               DIET G    N +IIEIGA++     + +R F+ F+            +L GI  +
Sbjct: 73  FCFVDIETNGG-LSNGQIIEIGAIKTRGTQELDR-FESFV--YAPVVPENITELTGICAD 128

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P  +S+   F  F    ++ ++AHN KFD GFI+A LQ+     L  +R + T+ 
Sbjct: 129 DLVGAPPLASVLERFRLFLG--DSVFVAHNVKFDYGFIDASLQKCGFGMLL-NRRLCTVE 185

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +ARR   + R  L SL +  G+   H   H AL D+    +++       S++ +  ++ 
Sbjct: 186 LARRTIEAQRYGLGSLKELLGVQNVH---HRALSDAVSCFEIFK---FALSRLPWSVQST 239

Query: 189 EDRFF 193
           ED   
Sbjct: 240 EDLIL 244


>gi|290475494|ref|YP_003468382.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Xenorhabdus bovienii SS-2004]
 gi|289174815|emb|CBJ81616.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Xenorhabdus bovienii SS-2004]
          Length = 208

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +++ D ++EI A+ L    +       T    + P  G    P AL   
Sbjct: 11  PVVIDVETGGFNAQTDALLEIAAITLKMDEEGWLMPADTLHFHIDPFEGANLDPAALAFT 70

Query: 64  GITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAELQR--I 113
           GI     L+   S  +     +    +         A  +AHNA FD  F+ A  +R  +
Sbjct: 71  GIDPTNPLRGAVSEYTALHAIFKMIRKGMKDNNCNRAIIVAHNASFDHNFVMAAAERSGL 130

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT +++       +  L   C    I       H AL D+   + ++ +
Sbjct: 131 KRNPFHPFATFDTAALSGLVL--GQTILAKACITAEIPFDSNQAHSALYDTDRTALLFCE 188

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 189 LVNRWKRLG 197


>gi|108563906|ref|YP_628222.1| DNA polymerase III subunit epsilon [Helicobacter pylori HPAG1]
 gi|107837679|gb|ABF85548.1| DNA polymerase III epsilon subunit [Helicobacter pylori HPAG1]
          Length = 323

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 87/217 (40%), Gaps = 19/217 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 111 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 168 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 224

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182
           +R   S R  L+ L +  G  I     H A  D+     ++   ++            I+
Sbjct: 225 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 282

Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           F    N   +       ++T P  SL +R K LF  I
Sbjct: 283 FSKCANTLIKRPPRARHQETPPPFSLFERTKGLFNII 319


>gi|77408519|ref|ZP_00785256.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae COH1]
 gi|77172876|gb|EAO76008.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae COH1]
          Length = 835

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K   +  V D+E TG       I     +   +  K   +++  + P+        +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P F  +    +     ++  ++AHN KFD   +  +L     +   P
Sbjct: 72  HLTGITDKQLVKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGFELRTP 129

Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              IDT+ +++  +P   +  L +L +   I ++    H A+ D+   + ++IK+    S
Sbjct: 130 --RIDTVELSQVFYPCLEKYSLGALAESLNIELTD--AHTAIADARATAQLFIKLKAKIS 185

Query: 180 QI 181
            +
Sbjct: 186 SL 187


>gi|87121336|ref|ZP_01077226.1| ribonuclease T [Marinomonas sp. MED121]
 gi|86163493|gb|EAQ64768.1| ribonuclease T [Marinomonas sp. MED121]
          Length = 216

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 87/197 (44%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKN 55
           K++ R    +V D+ET G ++K D ++EI A  + + +  +   + T +  + P  G   
Sbjct: 5   KDRFRGFLPVVIDVETAGFNNKTDALLEIAASILRMDENGELYIHETIEFNVRPFEGANL 64

Query: 56  SPEALKLHGITD-----EFLKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFIN 107
              AL+  GI       + + +      IFS+          + A  + HNA FD GF+N
Sbjct: 65  EKSALEFTGIDPFDPERKDVVEAEVLGQIFSKVRKELKSVGCKRAILVGHNAAFDHGFLN 124

Query: 108 AELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A ++R    ++P  P    DT S+A       +  L   C+   I  S+   H A  D+ 
Sbjct: 125 AAIERCDIKRNPFHPFSSFDTASLAGLAF--GQTVLAKACEAAAIPFSNAEAHSAKYDTE 182

Query: 166 LLSDVYIKMMVGGSQIN 182
             ++++ +++    ++ 
Sbjct: 183 KTAELFCEIVNRWKRLG 199


>gi|271965325|ref|YP_003339521.1| DNA polymerase III subunit epsilon-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270508500|gb|ACZ86778.1| DNA polymerase III epsilon subunit and related 3'-5'
           exonuclease-like protein [Streptosporangium roseum DSM
           43021]
          Length = 407

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 7/150 (4%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTGL    NDR+IEIG V L    +    +   + P GR   P+   +HGIT 
Sbjct: 10  YAVIDLETTGLRPSWNDRVIEIGIVHLDLSGEVTGEWATLVNP-GRDLGPQ--HIHGITA 66

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126
             ++  P+F  I     +  + +     AHN  FD GF++ E  R+  D PLD +  + T
Sbjct: 67  ADIRHAPAFGEIAGAVAERLDGR--VVAAHNLPFDAGFLSHEFGRLGLDTPLDHTAGVCT 124

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156
           ++ + +  P +   L + C R G++++   
Sbjct: 125 MAWSAQFLPGAPRSLAACCARAGVSLNGHH 154


>gi|170019811|ref|YP_001724765.1| exodeoxyribonuclease X [Escherichia coli ATCC 8739]
 gi|169754739|gb|ACA77438.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli ATCC
           8739]
          Length = 220

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D  K  +     + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDG-KIVKPMSHLVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|71737285|ref|YP_276026.1| ribonuclease T [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257486623|ref|ZP_05640664.1| ribonuclease T [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289624955|ref|ZP_06457909.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289650468|ref|ZP_06481811.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488734|ref|ZP_07006763.1| Ribonuclease T [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|123635391|sp|Q48F11|RNT_PSE14 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|71557838|gb|AAZ37049.1| ribonuclease T [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298156807|gb|EFH97898.1| Ribonuclease T [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|320325627|gb|EFW81689.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327089|gb|EFW83103.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330867245|gb|EGH01954.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330879065|gb|EGH13214.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330889564|gb|EGH22225.1| ribonuclease T [Pseudomonas syringae pv. mori str. 301020]
 gi|331010105|gb|EGH90161.1| ribonuclease T [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 225

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV    +   +     T+   + P  G      AL+  
Sbjct: 32  PVVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFEGANIEAAALEFT 91

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
           GI  D  L+   S  +  ++              + A  + HNA FD+GF+NA + R+  
Sbjct: 92  GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  
Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 210 IVNRWKEMG 218


>gi|319744611|gb|EFV96961.1| DNA polymerase III [Streptococcus agalactiae ATCC 13813]
          Length = 821

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 10/182 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K   +  V D+E TG       I     +   +  K   +++  + P+        +
Sbjct: 1   MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P F  +    +     ++  ++AHN KFD   +  +L     +   P
Sbjct: 58  HLTGITDKQLVKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGFELRTP 115

Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              IDT+ +++  +P   +  L +L +   I ++    H A+ D+   + ++IK+    S
Sbjct: 116 --RIDTVELSQVFYPCLEKYSLGALAESLNIELTD--AHTAIADARATAQLFIKLKAKIS 171

Query: 180 QI 181
            +
Sbjct: 172 SL 173


>gi|15616807|ref|NP_240019.1| ribonuclease T [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219681560|ref|YP_002467946.1| ribonuclease T [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|219682118|ref|YP_002468502.1| ribonuclease T [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|257471245|ref|ZP_05635244.1| ribonuclease T [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|11387052|sp|P57285|RNT_BUCAI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|25356015|pir||A84952 ribonuclease T [imported] - Buchnera sp. (strain APS)
 gi|10038870|dbj|BAB12905.1| ribonuclease T [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219621851|gb|ACL30007.1| ribonuclease T [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219624403|gb|ACL30558.1| ribonuclease T [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|311085930|gb|ADP66012.1| ribonuclease T [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086501|gb|ADP66582.1| ribonuclease T [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
 gi|311087083|gb|ADP67163.1| ribonuclease T [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
 gi|311087635|gb|ADP67714.1| ribonuclease T [Buchnera aphidicola str. JF98 (Acyrthosiphon
           pisum)]
          Length = 221

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 20/199 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NGR 53
           +  N+ R    +V DIET G ++  D ++EI  + L            T    + P  G 
Sbjct: 9   LLSNRFRTFYPVVIDIETAGFNANTDAVLEIAIITLKMDELGWLHKEDTLHFHIEPFKGS 68

Query: 54  KNSPEALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGF 105
             + +A+  + I         + +K +  SI  +  +    Q       +AHNA FD  F
Sbjct: 69  IINSDAIAFNKIDPFNPLRGAISEKIAIQSILKKVRNGIKIQGCSRGIVVAHNANFDHNF 128

Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A +QR  I  +P  P    DT +++       +  L+  CK  G++  +   H AL D
Sbjct: 129 LMAAIQRVKIKNNPFHPFATFDTAALSGLV--VGQTVLSKACKAIGLSFDNHQAHSALYD 186

Query: 164 SHLLSDVYIKMMVGGSQIN 182
           +   ++++ +++    ++ 
Sbjct: 187 TLQTANLFCELVNRWKRLG 205


>gi|300938801|ref|ZP_07153512.1| exonuclease [Escherichia coli MS 21-1]
 gi|300456266|gb|EFK19759.1| exonuclease [Escherichia coli MS 21-1]
          Length = 220

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDIIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|269837031|ref|YP_003319259.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786294|gb|ACZ38437.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
          Length = 966

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 86/208 (41%), Gaps = 24/208 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+E TG+D + D IIEI A++  +    +R ++  + P G         L GI  +
Sbjct: 5   YVALDLEATGMDPERDEIIEIAAIKFRNDRVLDR-WESLVRPRG-PIPFNITSLTGIGAK 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F  +     DF   +N   +  + +FD+  +     R+       + + DT  
Sbjct: 63  DVRRAPIFPVVAPRLRDFV--RNHPIVGQSPEFDIQMLAGAGLRL------QNPLYDTFQ 114

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-----------MV 176
           +A    P     +L ++  R G+++ H+  H A+ D      V++ +           + 
Sbjct: 115 LATILIPDLPAYNLATIAARLGVSVPHQ--HRAMADVETTMAVFLGLQDILLSHDAETLA 172

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNIS 204
             +++     +   R F E ++ V ++ 
Sbjct: 173 RLAELARVAGSPLARLFAEARREVASLD 200


>gi|215487057|ref|YP_002329488.1| exodeoxyribonuclease X [Escherichia coli O127:H6 str. E2348/69]
 gi|312967045|ref|ZP_07781263.1| exonuclease family protein [Escherichia coli 2362-75]
 gi|331647439|ref|ZP_08348531.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M605]
 gi|331657890|ref|ZP_08358852.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA206]
 gi|215265129|emb|CAS09517.1| DNA exonuclease X [Escherichia coli O127:H6 str. E2348/69]
 gi|312288509|gb|EFR16411.1| exonuclease family protein [Escherichia coli 2362-75]
 gi|315299931|gb|EFU59169.1| exonuclease [Escherichia coli MS 16-3]
 gi|330911653|gb|EGH40163.1| exodeoxyribonuclease X [Escherichia coli AA86]
 gi|331043163|gb|EGI15301.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M605]
 gi|331056138|gb|EGI28147.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA206]
          Length = 220

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKIRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|33596994|ref|NP_884637.1| putative exonuclease [Bordetella parapertussis 12822]
 gi|33566445|emb|CAE37698.1| putative exonuclease [Bordetella parapertussis]
          Length = 247

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 68/168 (40%), Gaps = 10/168 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R      +V D+ETTGL      I+E  AV +    +  R F   +  +GR   P   +
Sbjct: 73  LRALDGPFVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVRTDGR-VPPFISR 131

Query: 62  LHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           L GIT   + +D       F +F DF   +      HNA FD  F+ A   R        
Sbjct: 132 LTGITQAEVERDGVPVRQAFGDFLDFI--EGGPLFFHNASFDRRFLQAAADRTGLPF--E 187

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           ++   TL +AR+  P    + LN L +  G   +    H AL D    
Sbjct: 188 AQTHCTLMLARQAWPELPSHKLNVLARHLG---ASEPTHRALADVRTT 232


>gi|331663335|ref|ZP_08364245.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA143]
 gi|331059134|gb|EGI31111.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA143]
          Length = 220

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|116513938|ref|YP_812844.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093253|gb|ABJ58406.1| 3'-5' exonuclease with to CRISPR-associated protein from COG1343
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 290

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 13/172 (7%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + R +  DIETTGL++++D+I+ IGAV+          F   +         + ++L GI
Sbjct: 123 QKRFVAVDIETTGLNTESDQILSIGAVKHD-----GIEFYRLIK-QDIDVPKQIVELTGI 176

Query: 66  TDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           T E L K+         E  DF    N   + +N +FD  F+N + ++     L  + I 
Sbjct: 177 TSEMLSKEGVPLQDALEELTDFVG--NVPIVGYNFRFDSVFLNRDYRKCGMQEL-KNEIK 233

Query: 125 DTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D L + +R+        L ++   YGI   ++  H A+ D+    ++ +K++
Sbjct: 234 DLLPVVKRREKFLDNYKLQTVLSNYGIE--NKVPHNAVSDARATKELAMKLI 283


>gi|147814790|emb|CAN74413.1| hypothetical protein VITISV_042394 [Vitis vinifera]
          Length = 340

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 85/206 (41%), Gaps = 23/206 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IVFD ETTGL   NDRIIEIG  +L      N TFQ  + P     +P    +HGIT   
Sbjct: 137 IVFDTETTGLSRANDRIIEIGLQDL--GGGENSTFQTLVNPERIVPNP---HVHGITTYM 191

Query: 70  L--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121
           +   D P +  +      +   +        W+AHN + FDV F+  E  R N +     
Sbjct: 192 VNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPNW 251

Query: 122 RIIDTLSIARRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R +DTL +AR    S+ +       L +L + + I +     H  L D + LS +   + 
Sbjct: 252 RFMDTLPLAREFIKSAGSDLPSGASLQALREYFRIPLVG-PAHRVLSDVYTLSQILQMLT 310

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVP 201
                +        DR F       P
Sbjct: 311 FN---LKVSVANLLDRSFTASDIINP 333


>gi|218528419|ref|YP_002419235.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           chloromethanicum CM4]
 gi|218520722|gb|ACK81307.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           chloromethanicum CM4]
          Length = 297

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 83/212 (39%), Gaps = 10/212 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ET   + + D    +G +  ++  +  R     + P   + SP  +++HGI 
Sbjct: 1   MKVVAIDFETA--NERRDSACAVG-LAWIEGGRVARRESRLIRPPQLRFSPGNIRVHGIL 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P+F  + +EF    +      +AHNA FD+G + A L     +P+       T
Sbjct: 58  PADVRDAPTFPEVIAEFLP--DLSGGLMLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           L IARR  P    + L  +  R GI   H   H A  D+   +++ +  +      +   
Sbjct: 115 LQIARRVFPDPAGHGLAKVAGRLGIRFEH---HDAGEDAFACAEIALAALRETGAADIAD 171

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
                        T P   + +       R +
Sbjct: 172 LARGLGLTPIRALTTPRRDMTRSTSAKALRAS 203


>gi|33600836|ref|NP_888396.1| putative exonuclease [Bordetella bronchiseptica RB50]
 gi|33568436|emb|CAE32348.1| putative exonuclease [Bordetella bronchiseptica RB50]
          Length = 247

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 68/168 (40%), Gaps = 10/168 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R      +V D+ETTGL      I+E  AV +    +  R F   +  +GR   P   +
Sbjct: 73  LRALDGPFVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVRTDGR-VPPFISR 131

Query: 62  LHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           L GIT   + +D       F +F DF   +      HNA FD  F+ A   R        
Sbjct: 132 LTGITQAEVERDGVPVRQAFGDFLDFI--EGGPLFFHNASFDRRFLQAAADRTGLPF--E 187

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           ++   TL +AR+  P    + LN L +  G   +    H AL D    
Sbjct: 188 AQTHCTLMLARQAWPELPSHKLNVLARHLG---ASEPTHRALADVRTT 232


>gi|282852211|ref|ZP_06261563.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri 224-1]
 gi|282556630|gb|EFB62240.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri 224-1]
          Length = 937

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 9/162 (5%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   ++ D II+ G   ++   K  + +   + P+ R+       L  I++
Sbjct: 10  FAVVDLETTGTQRNQGDHIIQFGC-AIIKKRKVVKIYSFLINPH-REIPQAVENLTHISN 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +     F+    +       +N  ++AHN  FD+ F+N EL     +PL   + IDT+
Sbjct: 68  RDVAQARDFNYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAIDTV 124

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            +A+   P+     L  L  R  I   H + H A  D+ + +
Sbjct: 125 ELAQIAFPTFPSYKLRDLTARLKIK--HLNPHRADSDALVTA 164


>gi|213970865|ref|ZP_03398988.1| ribonuclease T [Pseudomonas syringae pv. tomato T1]
 gi|213924388|gb|EEB57960.1| ribonuclease T [Pseudomonas syringae pv. tomato T1]
          Length = 203

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPN-GRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV    +   +     T+   + P  G      AL+  
Sbjct: 10  PVVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFT 69

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
           GI  D  L+   S  +  ++              + A  + HNA FD+GF+NA + R+  
Sbjct: 70  GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 129

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  
Sbjct: 130 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 187

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 188 IVNRWKEMG 196


>gi|311896766|dbj|BAJ29174.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 233

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 9/164 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+E TG      R++E+  V+L    +T R F   + P G         +HGI   
Sbjct: 4   YAVVDVEATGRSPWRHRVVEVAVVQLDAGLRTEREFATLVDPGG---PVGPTHVHGIAQA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F  I     +    +    + H+   D  F+  E  RI    L    ++ T+ 
Sbjct: 61  DVLGAPRFRQIAPRLLELLAGR--VLVGHHVTCDRAFLEREFARIGV-ALPQVPLLCTMR 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +ARR+ P      L++     G+       H AL D+    ++ 
Sbjct: 118 LARRQLPEAGGYGLSACVDAAGLGW--FPAHTALGDARATVELL 159


>gi|167755995|ref|ZP_02428122.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
 gi|167703987|gb|EDS18566.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
          Length = 443

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 10/166 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ET   + +N+ I  IG +  +D      T    + P         ++L GIT E +
Sbjct: 7   FVDVETP--NYQNNSISSIGVI-NVDGDGVVTTKYFLVDPEAH-FDRFNIELTGITPEMV 62

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D+P+F  ++SE   +F   N+  +AHNA FD+  I+A LQR +  P+ P     T  I+
Sbjct: 63  ADQPNFKEVWSEIEPYF--TNSLVVAHNAVFDLSVISACLQRYDL-PIFPIFYTCTYRIS 119

Query: 131 RRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R    PS+   LN L   Y +T+ +   H AL DS    +++  ++
Sbjct: 120 RALKIPSNSYKLNDLSSYYHVTLDNH--HNALADSKACMEIFYYLL 163


>gi|116515062|ref|YP_802691.1| ribonuclease T [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|122285542|sp|Q057V1|RNT_BUCCC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|116256916|gb|ABJ90598.1| exoribonuclease T [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 221

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 75/196 (38%), Gaps = 20/196 (10%)

Query: 5   NKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNS 56
           N+ R    +V DIE+ G  +  D ++EI  V L      + K +      + P  G    
Sbjct: 13  NRFRGFYPVVIDIESAGFQADTDALLEIAIVTLKMNKSGWLKIDDRLHFHIIPFKGSIIK 72

Query: 57  PEALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINA 108
            E++  + I     L+   S  +     +            +    +AHNA FD  F+ A
Sbjct: 73  AESVAFNKIDPFNPLRGAVSEKNALKNIFKLVRKKININKCRKGILVAHNANFDHNFLMA 132

Query: 109 ELQRINK--DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +R+    +P  P    DT +++       +  L   CK  GI       H AL D+  
Sbjct: 133 ASKRVGNLNNPFHPFTTFDTAALSGLIF--GQTVLAKACKLAGIPFDTNQAHSALYDTIQ 190

Query: 167 LSDVYIKMMVGGSQIN 182
            + ++ +++    ++ 
Sbjct: 191 TAYLFCELVNRWKRLG 206


>gi|83647672|ref|YP_436107.1| ribonuclease T [Hahella chejuensis KCTC 2396]
 gi|123531538|sp|Q2SCE2|RNT_HAHCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|83635715|gb|ABC31682.1| ribonuclease T [Hahella chejuensis KCTC 2396]
          Length = 218

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 18/206 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVE--LLDYSK--TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G +SK D ++E+ AV   + D             + P  G     
Sbjct: 15  RFRGFLPVVVDVETAGFNSKTDALLEVSAVIISMEDDGMLYPEPPVSFNVEPFAGANIEQ 74

Query: 58  EALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109
            AL+  GI     L+D    +   +E +              A  + HNA FD  F+ A 
Sbjct: 75  AALEFTGIDPFNPLRDAKPEADALNELFRPIRKSVKSNGCNRAILVGHNATFDHSFLFAA 134

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  + ++P  P    DT ++A   +      L+  C+  GI   ++  H A  D+   
Sbjct: 135 AERGDVKRNPFHPFSTFDTATLAALAY--GHTVLSRACQLAGIPFDNKEAHSAEYDAMKT 192

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFF 193
           ++++  ++    ++  G+ T++  + 
Sbjct: 193 AELFCSIVNRWKELG-GWTTDQQDYA 217


>gi|168752095|ref|ZP_02777117.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4113]
 gi|168758576|ref|ZP_02783583.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4401]
 gi|168770825|ref|ZP_02795832.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4486]
 gi|168783143|ref|ZP_02808150.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4076]
 gi|168802378|ref|ZP_02827385.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC508]
 gi|195939745|ref|ZP_03085127.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4024]
 gi|208810405|ref|ZP_03252281.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4206]
 gi|208816703|ref|ZP_03257823.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4045]
 gi|208820052|ref|ZP_03260372.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4042]
 gi|209398184|ref|YP_002270926.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4115]
 gi|254793468|ref|YP_003078305.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14359]
 gi|188013988|gb|EDU52110.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4113]
 gi|188999500|gb|EDU68486.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4076]
 gi|189354630|gb|EDU73049.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4401]
 gi|189360293|gb|EDU78712.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4486]
 gi|189375616|gb|EDU94032.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC508]
 gi|208724921|gb|EDZ74628.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4206]
 gi|208731046|gb|EDZ79735.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4045]
 gi|208740175|gb|EDZ87857.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4042]
 gi|209159584|gb|ACI37017.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4115]
 gi|209767642|gb|ACI82133.1| exonuclease X [Escherichia coli]
 gi|209767646|gb|ACI82135.1| exonuclease X [Escherichia coli]
 gi|254592868|gb|ACT72229.1| DNA exonuclease X [Escherichia coli O157:H7 str. TW14359]
 gi|326343773|gb|EGD67535.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. 1125]
          Length = 220

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVHPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|157161311|ref|YP_001458629.1| exodeoxyribonuclease X [Escherichia coli HS]
 gi|157066991|gb|ABV06246.1| exodeoxyribonuclease X [Escherichia coli HS]
          Length = 220

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|15802257|ref|NP_288281.1| exodeoxyribonuclease X [Escherichia coli O157:H7 EDL933]
 gi|15831808|ref|NP_310581.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. Sakai]
 gi|168762363|ref|ZP_02787370.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501]
 gi|168788263|ref|ZP_02813270.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869]
 gi|217328801|ref|ZP_03444882.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588]
 gi|261227657|ref|ZP_05941938.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258177|ref|ZP_05950710.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. FRIK966]
 gi|12515897|gb|AAG56834.1|AE005407_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13362022|dbj|BAB35977.1| exonuclease X [Escherichia coli O157:H7 str. Sakai]
 gi|189367397|gb|EDU85813.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501]
 gi|189372044|gb|EDU90460.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869]
 gi|209767640|gb|ACI82132.1| exonuclease X [Escherichia coli]
 gi|217318148|gb|EEC26575.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588]
 gi|320188544|gb|EFW63206.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC1212]
 gi|326342223|gb|EGD66004.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. 1044]
          Length = 220

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVHPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|50084341|ref|YP_045851.1| ribonuclease T [Acinetobacter sp. ADP1]
 gi|49530317|emb|CAG68029.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse
           activity) [Acinetobacter sp. ADP1]
          Length = 221

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 80/191 (41%), Gaps = 20/191 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G +++ D ++EI  + ++   +       ++   + P  G     
Sbjct: 18  RFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYHAHINPFEGANLDR 77

Query: 58  EALKLHGITD------EFLKDKPS-FSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107
            +L   GI           +D+ S    IF    +   +Q       + HNA FD+GF+ 
Sbjct: 78  RSLDFIGIDPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDLGFLQ 137

Query: 108 AELQRI---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A + R    N++P     + DT++++       +  L   C + GI    +  H AL D+
Sbjct: 138 AAIARTSTKNQNPFHSFSVFDTVTLSAVMF--GQTVLAKACIQAGIDFDGKEAHSALYDT 195

Query: 165 HLLSDVYIKMM 175
              ++++  ++
Sbjct: 196 QKTAELFCYIL 206


>gi|115452527|ref|NP_001049864.1| Os03g0301400 [Oryza sativa Japonica Group]
 gi|108707691|gb|ABF95486.1| exonuclease family protein, expressed [Oryza sativa Japonica Group]
 gi|113548335|dbj|BAF11778.1| Os03g0301400 [Oryza sativa Japonica Group]
 gi|215678888|dbj|BAG95325.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 313

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 22/207 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG   + +RIIE    +L+     N T Q  + P       +   +HGI+  
Sbjct: 113 ILVFDIETTGFSRRYERIIEFAVRDLMGGK--NSTIQTLINPEREI---KNAYVHGISSS 167

Query: 69  FL--KDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP 120
            +   D P F         +       ++   W+AHN + FDV F+  E QR   +    
Sbjct: 168 MVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGD 227

Query: 121 SRIIDTLSIARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DTL IAR+   S         L++L + Y I ++  S H A+ D   L  V  K+ 
Sbjct: 228 WLFVDTLPIARQLIGSDGEKLKSVSLDNLREHYKIPLAG-SAHRAMQDVITLCYVLQKLT 286

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPN 202
               ++        +R F+    ++P 
Sbjct: 287 F---ELKLTVPQLLERSFRVSDLSIPR 310


>gi|283785581|ref|YP_003365446.1| exodeoxyribonuclease X [Citrobacter rodentium ICC168]
 gi|282949035|emb|CBG88638.1| exodeoxyribonuclease X [Citrobacter rodentium ICC168]
          Length = 220

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVVDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I      ++  +   ++AHNA FD   +          P  P   I T+ ++
Sbjct: 59  ADKPWIEDIIPH---YYGSE--WYVAHNASFDSRVL----------PEMPGEWICTMKLS 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +   +    H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKSRKLNVQTPAGLHHHRALYDCYITAALLIDIM 151


>gi|119504386|ref|ZP_01626466.1| ribonuclease T [marine gamma proteobacterium HTCC2080]
 gi|119459894|gb|EAW40989.1| ribonuclease T [marine gamma proteobacterium HTCC2080]
          Length = 216

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 81/202 (40%), Gaps = 18/202 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-NGRKNSP 57
           R      ++ D+ET G ++  D ++E+ A  + + D  +     T    + P  G     
Sbjct: 12  RFRGFLPVIVDVETGGFNAATDALLEVAATLIHVDDRGEVVLGDTISFNVEPFEGANIEA 71

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
            AL+  GI  E      L +  +   +F+       +        + HNA FD GFIN+ 
Sbjct: 72  SALEFTGIDPENPLRAALPEAIALGDLFTRIRKEVRDTGCNRAILVGHNAHFDAGFINSA 131

Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             R    ++P  P    DT ++A          L   C+R GI  ++   H A  D+   
Sbjct: 132 SLRCDIKRNPFHPFSHFDTATLAGLAF--GHTVLAQACRRAGIEFNNSEAHSAAYDATKT 189

Query: 168 SDVYIKMMVGGSQINFGFKTNE 189
           ++++   +V   Q   G++  E
Sbjct: 190 AELFC-CIVNQWQRLGGWQWPE 210


>gi|227892520|ref|ZP_04010325.1| possible DNA-directed DNA polymerase III epsilon subunit
           [Lactobacillus ultunensis DSM 16047]
 gi|227865641|gb|EEJ73062.1| possible DNA-directed DNA polymerase III epsilon subunit
           [Lactobacillus ultunensis DSM 16047]
          Length = 370

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 6   KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K    V D+ETTG   +    II+ G   ++   K  +T+   + P+ R+     + L G
Sbjct: 7   KDTFAVVDLETTGTQRENGHHIIQFGC-AIIKNLKVVKTYSFMINPH-REIPQSVVNLTG 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I +E +  +  F     +       QNA ++AHN  FD+ F+N EL +   D L  ++ I
Sbjct: 65  IHNEDVAKEKDFKFYAPKIVKIL--QNAVFVAHNVDFDLPFLNYELTQHGYDAL-TNKAI 121

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           DT+ +A+   P+     L+ L  +  I   H + H A  D++  + + IK++    ++
Sbjct: 122 DTVELAKIAFPTLPSYKLSDLTSQLEIK--HLNPHKADSDAYGTAILLIKIIKQLEKL 177


>gi|294790489|ref|ZP_06755647.1| DNA polymerase III domain protein [Scardovia inopinata F0304]
 gi|294458386|gb|EFG26739.1| DNA polymerase III domain protein [Scardovia inopinata F0304]
          Length = 241

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 8/166 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+FD ETTG +  + RIIEIG + L         +Q  + P G   +  +  L GI D  
Sbjct: 44  IIFDTETTG-NFSDQRIIEIGGLFLRKGVPIGE-WQQLINP-GVNITHFSQHLSGINDAM 100

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + ++P  S++   F +    QN   + +N  FD+  +N E  R+    +  S +ID + I
Sbjct: 101 IANEPPASTVIPWFINSI--QNLTIVGYNVNFDINALNEEANRLGMSGISVSNVIDVIDI 158

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           AR+  P S    L  +     +  S   KH AL D+ L    + KM
Sbjct: 159 ARQSLPNSPSYSLEQVAILLNV--SDTEKHRALDDAILTWKCWQKM 202


>gi|297568933|ref|YP_003690277.1| DNA polymerase III, epsilon subunit [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924848|gb|ADH85658.1| DNA polymerase III, epsilon subunit [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 238

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 21/201 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD E TGL+ + D I+ IGAV++ +       TF V++ P+ R    ++  +H IT 
Sbjct: 40  FVVFDTELTGLNRQRDEIVSIGAVKIRNLQILVGETFHVYIKPS-RALPKDSTLIHRITP 98

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++  P  +++  +F  F  +  A  + H    DV F+N   +R     +  +  +DT+
Sbjct: 99  QQIEQAPQLATVLPDFISFCGQ--ALLVGHYVGLDVAFLNRACRRH-YGAVVSNPCLDTM 155

Query: 128 --------SIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                      ++ H   R      L  L + Y +     + H A  D+   + +++ ++
Sbjct: 156 RLAQTYTEMQWQQYHDRFRMDATYSLAGLSQEYNLP--DFTLHDAYEDALQTAYLFVFLI 213

Query: 176 VGGSQINFGFKTNEDRFFKEE 196
                   G  T +D F   +
Sbjct: 214 KKMR--AKGIVTLKDIFSAGQ 232


>gi|300811276|ref|ZP_07091776.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497736|gb|EFK32758.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 290

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 13/169 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIETTGL++++D+I+ IGAV+          F   +         + ++L GIT  
Sbjct: 126 FVAVDIETTGLNTESDQILSIGAVKHD-----GTEFYRLIK-QDIDVPKQIVELTGITPA 179

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L KD      +  E  DF    +   + +N +FD  F+N E ++     L  + I D L
Sbjct: 180 MLDKDGVPLQDVLGELTDFVG--DVPIVGYNFRFDSAFLNREYRKCGMQEL-KNEIKDLL 236

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            + +RK        L ++   YGI   ++  H A+ D+    ++ +K++
Sbjct: 237 PVVKRKEKFLDNYKLQTVLSNYGIE--NKVPHNAVSDARATKELAMKLI 283


>gi|301645642|ref|ZP_07245570.1| exonuclease [Escherichia coli MS 146-1]
 gi|301076071|gb|EFK90877.1| exonuclease [Escherichia coli MS 146-1]
          Length = 220

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNVALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|239831040|ref|ZP_04679369.1| exonuclease [Ochrobactrum intermedium LMG 3301]
 gi|239823307|gb|EEQ94875.1| exonuclease [Ochrobactrum intermedium LMG 3301]
          Length = 214

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 9/214 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   K R IV D ETTGL    DRI+ IGAV++      +++    +    + + P+A  
Sbjct: 9   VHTRKKRVIVVDTETTGLLP-YDRIVTIGAVKIEGDDFLHQSLH-LIFDPRKDSHPQAEA 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  FS + +    +F+  + E +AHNA FD+ ++  E ++   D L P 
Sbjct: 67  VHGYDNWMTRYQDLFSDLAAPIRKWFDWAD-EIVAHNADFDMRYVQREFRKAEVDML-PH 124

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +  T+  +R         L+    R G++   + +HGAL D++L + +Y+        I
Sbjct: 125 PVFCTMERSREIWSGQSAKLDDCLARIGLSRIGK-RHGALEDAYLTAGLYLH----QRGI 179

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
                        +  K  P     +  +    R
Sbjct: 180 KKSLPKVNSWSPPKNLKPYPPRPEGELPRRAPKR 213


>gi|307823995|ref|ZP_07654222.1| ribonuclease T [Methylobacter tundripaludum SV96]
 gi|307734779|gb|EFO05629.1| ribonuclease T [Methylobacter tundripaludum SV96]
          Length = 207

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 17/194 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGRKNSP 57
           R      +V DIET G + K + ++EI AV +   S    +    +   + P    +   
Sbjct: 11  RFRGFLPVVVDIETAGFNPKKNALLEIAAVIVELNSNSDLEITERYTTHVIPFKNAELDE 70

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
            ALK +GI         +++K +   +F    +     N      + HN  FD+GF+NA 
Sbjct: 71  AALKFNGIDPHHPFRMAIEEKDALHMLFKPIKEAVKRNNCTRAILVGHNPAFDIGFLNAA 130

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           +QR  I + P  P    DT ++    +   +  L  + +  G+   +   H AL D+   
Sbjct: 131 IQRTQIKRSPFHPFSTFDTATLGGLVY--QQTVLAKIAQTAGLDWDNEKAHSALYDAEKT 188

Query: 168 SDVYIKMMVGGSQI 181
           ++++  ++    Q+
Sbjct: 189 AELFCMIVNRWKQL 202


>gi|147677749|ref|YP_001211964.1| hypothetical protein PTH_1414 [Pelotomaculum thermopropionicum SI]
 gi|146273846|dbj|BAF59595.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 937

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 36/229 (15%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI++     +V D+ETTGLD  +DRIIEIG V L D  K    +   + P GR    +  
Sbjct: 1   MIKE----IVVCDLETTGLDPLSDRIIEIGLVRLKD-LKIVDIYHTMVNP-GRPLPLKIK 54

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L G+ D  L   P+FS +  +   F    +A    HN +FD+GF+ A            
Sbjct: 55  NLTGLDDSDLASAPAFSGVREKVLGFIG--DAPIAGHNIRFDMGFLAAA-----GGISFK 107

Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSK-------------------HGA 160
           +   DT+ +AR   P      L SLC+R  +  + R +                   H  
Sbjct: 108 NPAYDTVELARLAVPGLPTYRLESLCERLNVEAAARHRALDDALAAAGLLIKLIHKLHD- 166

Query: 161 LLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKE-EKKTVPNISLLKR 208
            +D  +L+ +   +    S+  F   +      K+   + +P     KR
Sbjct: 167 -IDIEVLAQLNALLTEARSEWQFITTSLLKSIIKKFPDRKIPESPYWKR 214


>gi|217033856|ref|ZP_03439281.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10]
 gi|216943754|gb|EEC23197.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10]
          Length = 287

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 56/217 (25%), Positives = 86/217 (39%), Gaps = 19/217 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 132 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182
           +R   S R  L+ L +  G  I     H A  D+     ++   ++            I+
Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246

Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           F    N   +       ++T P  SL +R K L   I
Sbjct: 247 FSKCANTLIKRPPRARYQETPPPFSLFERTKGLLNII 283


>gi|218548595|ref|YP_002382386.1| exodeoxyribonuclease X [Escherichia fergusonii ATCC 35469]
 gi|218356136|emb|CAQ88753.1| DNA exonuclease X [Escherichia fergusonii ATCC 35469]
 gi|324113580|gb|EGC07555.1| exonuclease [Escherichia fergusonii B253]
 gi|325497013|gb|EGC94872.1| exodeoxyribonuclease X [Escherichia fergusonii ECD227]
          Length = 220

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++D   TN      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   VIDTETCGLQGG---IVEIASVDVVDGKITNPMSH-LVRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +          P  P   I T+ ++
Sbjct: 59  ADKPWIEEVIPHYY-----GSDWYVAHNASFDRRVL----------PEMPGEWICTMKLS 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           R   P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RHLWPGIKYSNMALYKSRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|325912570|ref|ZP_08174953.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
 gi|325477991|gb|EGC81120.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
          Length = 241

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K +DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+
Sbjct: 69  QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +A+   P+     L  +     I   H + H A  D+ + + + +K++
Sbjct: 126 ELAQIAFPTIPSYKLQDITSTLHIK--HANPHRADSDALVTAKMLLKII 172


>gi|262375958|ref|ZP_06069189.1| ribonuclease T [Acinetobacter lwoffii SH145]
 gi|262309052|gb|EEY90184.1| ribonuclease T [Acinetobacter lwoffii SH145]
          Length = 219

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 20/196 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G +++ D ++EI A+ ++   +      + +   + P  G     
Sbjct: 16  RFRGFLPVVVDVETAGFNAQTDALLEIAAIPIVYNEEGQFVPGQAYHAHINPFEGANLDR 75

Query: 58  EALKLHGITD------EFLKD-KPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107
            +L+  GI           +D K +   IF    +   +QN      + HNA FD+GF+ 
Sbjct: 76  RSLEFIGIDPSNPMRIAMAEDEKTALKRIFKSVNEVRRQQNCTHAVLVGHNAHFDLGFLQ 135

Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A + R     ++P     + DT++++       +  L   C + GI    +  H AL D+
Sbjct: 136 AAIARTGTKNQNPFHSFSVFDTVTLSAVMF--GQTVLAKSCIQAGIEFDGKEAHSALYDT 193

Query: 165 HLLSDVYIKMMVGGSQ 180
              ++++  ++   + 
Sbjct: 194 QKTAELFCYILNKLAP 209


>gi|323961899|gb|EGB57498.1| exonuclease [Escherichia coli H489]
          Length = 220

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNIALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|313144535|ref|ZP_07806728.1| DNA polymerase III [Helicobacter cinaedi CCUG 18818]
 gi|313129566|gb|EFR47183.1| DNA polymerase III [Helicobacter cinaedi CCUG 18818]
          Length = 254

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 8/168 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             +   +  DIET G   ++  IIEIGA+ + + S+   +F+ ++            +L 
Sbjct: 68  WQEGEFVFVDIETNGAKPQSSEIIEIGALRVKN-SQILESFESYVYAPF--VPENITELT 124

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI  E +++ P    +   F +F       ++AHN  FD  F++  L++     L  +  
Sbjct: 125 GIRQEDIQNAPQSKEVLRAFREFLG--GGVFVAHNVNFDFSFLDYHLRQNGLFGLL-NPK 181

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           + T+ +A++   S R  L+ L +  GI  +    H A  D+     ++
Sbjct: 182 LCTIDLAKKTILSKRYALSYLNEFLGINTAM--SHRAYADALTSFRIF 227


>gi|26108511|gb|AAN80713.1|AE016761_288 Exodeoxyribonuclease X [Escherichia coli CFT073]
          Length = 238

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 22  IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 76

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 77  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 121

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 122 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 169


>gi|309805626|ref|ZP_07699668.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165064|gb|EFO67305.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
          Length = 225

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 9/170 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K +DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+
Sbjct: 69  QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +A+   P+     L  +     I   H + H A  D+ + + + +K++ 
Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKIIE 173


>gi|29374711|ref|NP_813863.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
 gi|227555735|ref|ZP_03985782.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
 gi|256761903|ref|ZP_05502483.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|29342169|gb|AAO79935.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
 gi|227175140|gb|EEI56112.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
 gi|256683154|gb|EEU22849.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|315573941|gb|EFU86132.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecalis TX0309B]
 gi|315581892|gb|EFU94083.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecalis TX0309A]
          Length = 289

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 16/170 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FDIETTGLD   D +I+I A   +D  + +  F   +  +      E  KL GIT++
Sbjct: 8   FIAFDIETTGLDFHQDAVIQISAARYVDGIEVD-YFDTLVNSDY--IPDEITKLTGITND 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127
            + + P+   +    +D+    +   + HN   FD  F+ A+      +  +   I DT 
Sbjct: 65  QVLNAPTLDEVMPYLFDYLG--DTILVGHNIKSFDFPFLKAK----GYNIAEGHEIYDTR 118

Query: 128 SIAR-RKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMM 175
             A  RKH +  N L +L   +GI  IS    H AL D  + + V+++++
Sbjct: 119 YFAATRKHGAVNNQLTTLKLLFGIDAIS----HNALNDVRISAIVFMELL 164


>gi|330811344|ref|YP_004355806.1| ribonuclease T [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379452|gb|AEA70802.1| Ribonuclease T [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 225

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI A    ++   +   + T+   + P  G      AL+  
Sbjct: 32  PVVVDVETGGFNSATDALLEIAATTIGMDEKGFVFPDHTYFFRVEPFEGANVEAAALEFT 91

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI  D  L+   S  +  ++              + A  + HN+ FD+GF+NA + R  +
Sbjct: 92  GIKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDM 151

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+   I    R  H A  D+   ++++  
Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAADIDFDGREAHSARYDTEKTAELFCG 209

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 210 IVNRWKEMG 218


>gi|88596045|ref|ZP_01099282.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190886|gb|EAQ94858.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315058737|gb|ADT73066.1| Exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni S3]
 gi|315927070|gb|EFV06421.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 326

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 82/216 (37%), Gaps = 17/216 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTG D K + I+EI A+   +  K    F   +            +  GI ++
Sbjct: 34  YVVIDLETTGFDPKCNEILEIVALRYENNEKIAE-FSKLIK--VSFLPSFITEFTGINED 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+    S    EF DF    +   +AHNA FD+ F+          P      +DT+ 
Sbjct: 91  MIKNCNDISQTLKEFDDFLKSGD-ILVAHNAHFDINFLYDNFMCYLNKPFS-FDFVDTMR 148

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK---------MMVGG 178
           +++  +   + + L  LC +Y I   +   H    D  L     ++         ++   
Sbjct: 149 LSKLINQELAHHRLKDLCNQYNICYEN--AHRGEKDCELTHLCLMELKKTAFDNSLIEND 206

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214
             +N G KT   +   + K     I       PL+ 
Sbjct: 207 VLVNNGLKTQIRQTQTKAKDIQAKIQEFDISHPLYN 242


>gi|261856008|ref|YP_003263291.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus
           c2]
 gi|261836477|gb|ACX96244.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus
           c2]
          Length = 481

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 9/164 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
                 DIETTG  ++ DRI EIG V L     T   +   + P G         L GIT
Sbjct: 19  QPLACLDIETTGSHTERDRITEIGIVTLHPDG-TQSNWSCLIHP-GCAIPARITTLTGIT 76

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E + D+P F+       +    +N   IAHNA+FD+GF+    +R          ++ +
Sbjct: 77  NEMVADQPVFAHRAQALLERL--ENHIVIAHNARFDLGFLKQAFRREGIRF--NPSVLCS 132

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + ++R+  P   R++L+S+ +R G++ +  ++H AL D+ +++D
Sbjct: 133 VKLSRQMFPAERRHNLDSVMQRMGLSCA--ARHRALGDAAVVAD 174


>gi|149374321|ref|ZP_01892095.1| ribonuclease T [Marinobacter algicola DG893]
 gi|149361024|gb|EDM49474.1| ribonuclease T [Marinobacter algicola DG893]
          Length = 211

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G + + D ++EI AV    +   + K   T    + P  G     
Sbjct: 4   RFRGFLPVVVDVETGGFNPEKDALLEIAAVILTMDDDGWLKRAETHVQQIDPFEGANLEQ 63

Query: 58  EALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
            AL   GI       E + ++   S IF          +      + HNA FD  F+ A 
Sbjct: 64  SALDFTGIDPWNPEREAVPEREGMSEIFGPIRKAVKAHDCKRAVLVGHNATFDHNFVFAA 123

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             R  I ++P  P    DT ++A   +      L   CK  GI  S++  H A  D+   
Sbjct: 124 ALRSDIRRNPFHPFSTFDTATLAGLAY--GHTVLAQACKLAGIPFSNKDAHSAAYDAEKT 181

Query: 168 SDVYIKMMVGGSQIN 182
           +D++  ++    +I 
Sbjct: 182 ADLFCGIVNRWREIG 196


>gi|259501466|ref|ZP_05744368.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners DSM 13335]
 gi|302191565|ref|ZP_07267819.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus iners AB-1]
 gi|309803902|ref|ZP_07697986.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 11V1-d]
 gi|309804516|ref|ZP_07698582.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
 gi|309806946|ref|ZP_07700929.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
 gi|309808365|ref|ZP_07702268.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
 gi|309809203|ref|ZP_07703075.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
 gi|325912750|ref|ZP_08175130.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
 gi|329919994|ref|ZP_08276872.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 1401G]
 gi|259167134|gb|EEW51629.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners DSM 13335]
 gi|308163997|gb|EFO66260.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 11V1-d]
 gi|308166169|gb|EFO68386.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
 gi|308166670|gb|EFO68866.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
 gi|308168428|gb|EFO70543.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
 gi|308170503|gb|EFO72524.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
 gi|325477964|gb|EGC81096.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
 gi|328936765|gb|EGG33205.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 1401G]
          Length = 177

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET   +   D    +  V + D    + +F   + P         +K+HGIT
Sbjct: 1   MNFTAMDFETA--NRHYDSACSLALVLVRDNKIID-SFYTVINPQ-MPFDKNNIKIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +KD P+   ++ +      +     +AHNA+FD   +   L++ N         IDT
Sbjct: 57  ANDVKDAPTMDEVWPKIR-LLFQPGMLVVAHNARFDCNVMKKSLKKYNIAE-PHYLTIDT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L+ +R   P+ +N  L+++  +  I + H   H AL DS   +++ IK
Sbjct: 115 LATSRALMPNLKNYRLDTVSNQLNIDLWHH--HNALSDSEACAEILIK 160


>gi|222624763|gb|EEE58895.1| hypothetical protein OsJ_10524 [Oryza sativa Japonica Group]
          Length = 901

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 22/207 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG   + +RIIE    +L+     N T Q  + P       +   +HGI+  
Sbjct: 701 ILVFDIETTGFSRRYERIIEFAVRDLMGGK--NSTIQTLINPEREI---KNAYVHGISSS 755

Query: 69  FL--KDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP 120
            +   D P F         +       ++   W+AHN + FDV F+  E QR   +    
Sbjct: 756 MVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGD 815

Query: 121 SRIIDTLSIARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DTL IAR+   S         L++L + Y I ++  S H A+ D   L  V  K+ 
Sbjct: 816 WLFVDTLPIARQLIGSDGEKLKSVSLDNLREHYKIPLAG-SAHRAMQDVITLCYVLQKLT 874

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPN 202
               ++        +R F+    ++P 
Sbjct: 875 F---ELKLTVPQLLERSFRVSDLSIPR 898


>gi|157414745|ref|YP_001482001.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157385709|gb|ABV52024.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747384|gb|ADN90654.1| DNA polymerase III, epsilon subunit [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931109|gb|EFV10083.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni 327]
          Length = 253

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 7/147 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIE+TG  SK   I+EIGAV++ +  +  R FQ F+    ++      +L GIT E
Sbjct: 72  FCIVDIESTGGVSKG-EILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYE 127

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ PS + + S+F  F   +++ ++AHN +FD  FI+  L       L  +R I T+ 
Sbjct: 128 MVENAPSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILL-NRRICTIE 184

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155
            A+    S +  L  L +  G+  +H 
Sbjct: 185 FAQCCIESPKYKLEVLKEFLGVENTHH 211


>gi|78186872|ref|YP_374915.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273]
 gi|78166774|gb|ABB23872.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273]
          Length = 236

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 16/186 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +VFD ETTG D K D +I IGAV +   S     +F+V +    R    EA+ +HG+ 
Sbjct: 48  RMVVFDTETTGFDLKTDGVISIGAVAINGLSINVADSFEVLVR-QDRVGRSEAVAVHGLL 106

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +            F ++     +  +A +A FDV  +N  L    +  L    ++DT
Sbjct: 107 KKDIAGGAGEVEAAEAFLEYIGS--SILVAQHASFDVAMLNRILSETFRIRLFNG-VVDT 163

Query: 127 LSIARRK---------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            S+A+R          H +    L+ LC+RYGI +  R  H A  D+ L + +  +++  
Sbjct: 164 ASLAKRLEKGPYYNLAHKAGEYRLDHLCQRYGIRLYDR--HTAAGDAFLTAQLLQRLLSK 221

Query: 178 GSQINF 183
           G     
Sbjct: 222 GRSAGI 227


>gi|330981566|gb|EGH79669.1| ribonuclease T [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 193

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 17/187 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHGI 65
           V D+ET G +S  D ++EI AV +    K       T+   + P  G      AL+  GI
Sbjct: 2   VVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTGI 61

Query: 66  -TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI--NK 115
             D  L+   S  +  ++              + A  + HNA FD+GF+NA + R+   +
Sbjct: 62  KLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMKR 121

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  ++
Sbjct: 122 NPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIV 179

Query: 176 VGGSQIN 182
               ++ 
Sbjct: 180 NRWKEMG 186


>gi|323174733|gb|EFZ60349.1| exonuclease family protein [Escherichia coli LT-68]
          Length = 220

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L +   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYRTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|322384417|ref|ZP_08058103.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321150775|gb|EFX44235.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 204

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 13/202 (6%)

Query: 7   MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           MR+I  VFD+ETTGLD   D+I EI A+      +  R        +G K +PE + L G
Sbjct: 1   MREIYTVFDLETTGLDPTKDQITEIAAIRTDLIREYGRLDVRITKNSGTKLTPEIINLTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I +  ++              F +   +  +AH+A FD+ F+   L       ++PS  +
Sbjct: 61  INESMMRGGIPEELAIPLLACFMS--GSIVVAHHAPFDLSFLARYL-------VEPSSFV 111

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            T  +++   P     L ++ +R GI ++    H A+ D      ++ ++      +   
Sbjct: 112 CTRVLSKLVEPGESASLAAVAERRGIELTGH--HRAMADVEATVKIFQQLKAEADALGIR 169

Query: 185 FKTNEDRFFKEEKKTVPNISLL 206
           +        K     +P ++ +
Sbjct: 170 YYNVLINDEKRPLTYIPKLAKV 191


>gi|71066188|ref|YP_264915.1| ribonuclease T [Psychrobacter arcticus 273-4]
 gi|71039173|gb|AAZ19481.1| RNAse T [Psychrobacter arcticus 273-4]
          Length = 239

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 82/218 (37%), Gaps = 23/218 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NG 52
           M  K + R    +V D+ET G +++ D ++EI  + +L   +            + P  G
Sbjct: 24  MKLKERFRKFLPVVVDVETAGFNAQTDALLEIACIPVLMNEQGVFYPGEALNAHIEPFEG 83

Query: 53  RKNSPEALKLHGIT-DEFLKDKPSFSS--IFSEFWDFFNE-------QNAEWIAHNAKFD 102
               P AL   GI  +  L+   +          +    E       +    I HNA FD
Sbjct: 84  ANLEPSALAFTGIDPNNPLRKAIAEDEKTALRRIFKGLKEVRRNEDCRQCVLIGHNAHFD 143

Query: 103 VGFINAELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
           + F+NA + R N    +P     + DT++++       +  L   CK  G+       H 
Sbjct: 144 LAFLNAAVLRTNNKSHNPFHNFSVFDTVTLSALAF--GQTVLARACKAAGLDFDGNDAHS 201

Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEK 197
           AL D+   ++++  ++     +     +  +      K
Sbjct: 202 ALYDTQKTAELFCYILNNYPMLANAMHSEPETAADNNK 239


>gi|167470221|ref|ZP_02334925.1| DNA polymerase III, epsilon subunit [Yersinia pestis FV-1]
          Length = 143

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 54/140 (38%), Positives = 77/140 (55%), Gaps = 11/140 (7%)

Query: 8   RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+I+ D ETTG++      +  RIIEIG V +++   T R F V++ P  R   PEA  +
Sbjct: 7   RQILLDTETTGMNKLGVHYEGHRIIEIGTVAVINLPLTGRNFHVYVKP-ARLVDPEAYGV 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120
           HGI+DEFL DKP+F+ I  EF DF   +  E + HNA FD+GF + E + + +D      
Sbjct: 66  HGISDEFLADKPTFADITPEFLDFI--RGGELVIHNAAFDIGFKDYEFRMLQQDIPKTET 123

Query: 121 -SRIIDTLSIARRKHPSSRN 139
              I D   +  R  P  R+
Sbjct: 124 LCPISDNKEMPPRLFPGKRH 143


>gi|332705935|ref|ZP_08426009.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L]
 gi|332355339|gb|EGJ34805.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L]
          Length = 818

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 8/166 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTG     D ++EI A+ L+D  K  R F  ++      +  E+ ++HG +D FL
Sbjct: 465 VFDVETTGFSVSQDEVVEIAAIRLVDGKKQAR-FHAYI--TNTVSVGESERIHGHSDRFL 521

Query: 71  KDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +       +F EF++F    ++  + HN  FD+  + A+ Q+         +  DTL +
Sbjct: 522 AENGRNAKHVFGEFFEFVG--DSLLVGHNVGFDIKMVTAQAQKAGVSYPKKLQWEDTLEL 579

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           A R   S R  L  L +     ++H   H A+ D     D+   ++
Sbjct: 580 ANRFIESERYSLEVLAEHLN--LTHLPSHKAMDDVETTIDLLALLI 623


>gi|309809881|ref|ZP_07703731.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308169833|gb|EFO71876.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 233

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 9/170 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K +DRII+ G   + D   T +T+   + P  +        L GI++
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +      +FS    +  +    +N  ++AHN  FD+ F+N EL      P    + IDT+
Sbjct: 69  QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +A+   P+     L  +     I   H + H A  D+ + + + +K++ 
Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKIIE 173


>gi|188579669|ref|YP_001923114.1| exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
 gi|179343167|gb|ACB78579.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
          Length = 297

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 10/212 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + + D    +G +  ++  +  R     + P   + SP  +++HGI 
Sbjct: 1   MSVVAIDFETA--NERRDSACAVG-LAWIEGGRVVRRETRLIRPPQMRFSPGNIRIHGIL 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P+F  +F+EF    +   A  +AHNA FD+G + A L     +P+       T
Sbjct: 58  PADVRDAPTFPEVFAEFRP--DLTGALLLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           L IARR  P    + L  +  R GI   H   H A  D+   +++ +  +      +   
Sbjct: 115 LQIARRIFPDPAGHGLAKVAGRLGIRFEH---HDAGEDAFACAEIALAALRETGAADIAD 171

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
                          P     +       R +
Sbjct: 172 LARGLGLMPIRAVAGPRRDFTRSTSAHALRAS 203


>gi|288932698|ref|YP_003436758.1| DNA polymerase III subunit epsilon [Ferroglobus placidus DSM 10642]
 gi|288894946|gb|ADC66483.1| DNA polymerase III, epsilon subunit [Ferroglobus placidus DSM
           10642]
          Length = 200

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 89/198 (44%), Gaps = 18/198 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--NRTFQVFLCPNGRKNSPEALKLHGI 65
           +  V D+ETTGL+ K D II I  +  +D  K   +  +   L P   K    ++K HGI
Sbjct: 5   KFAVVDVETTGLNVKKDEIISIAII-PMDGLKILFSEAYYRILKPRRFKID--SVKYHGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   +++ P+F  +  E  +  NE+    + ++   D+ F+    +    + +   + +D
Sbjct: 62  TPRMVEEAPTFCEVKEEILEKLNER--IIVGYSINLDIEFLKKSFKEC--EVVFECKYVD 117

Query: 126 TLSIARRKHP-----SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              + +              L  L K+YG+ +++R  H AL D+++ + ++   M     
Sbjct: 118 IADVEKLVGRLFGDYMKDVTLEDLAKKYGVDVAYR--HSALSDAYITAQIFQ--MQLLRL 173

Query: 181 INFGFKTNEDRFFKEEKK 198
           + +G +  ED     +K+
Sbjct: 174 LKYGLRKFEDVLRAIKKE 191


>gi|312871342|ref|ZP_07731439.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 3008A-a]
 gi|312875261|ref|ZP_07735270.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2053A-b]
 gi|311089224|gb|EFQ47659.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2053A-b]
 gi|311093135|gb|EFQ51482.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 3008A-a]
          Length = 177

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET   +   D    +  V + D    + +F   + P         +K+HGIT
Sbjct: 1   MNFTAMDFETA--NRHYDSACSLALVLVRDNKIID-SFYTVINPQ-MPFDKNNIKIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +KD P+ + ++ +      +     +AHNA+FD   +   L++ N         IDT
Sbjct: 57  ANDVKDAPTMNEVWPKIR-LLFQPGMLVVAHNARFDCNVMKKSLKKYNIAE-PHYLTIDT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L+ +R   P+ +N  L+++  +  I + H   H AL DS   +++ IK
Sbjct: 115 LATSRALMPNLKNYRLDTVSNQLNIDLWHH--HNALSDSEACAEILIK 160


>gi|311694106|gb|ADP96979.1| ribonuclease T [marine bacterium HP15]
          Length = 208

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVF---LCP-NGRKNSP 57
           R      +V D+ET G + + D ++E+ AV   +D     R  +     + P  G     
Sbjct: 4   RFRGFLPVVVDVETAGFNPERDALLEVAAVILTMDDDGWVRRAETHVQQIDPFEGANLEQ 63

Query: 58  EALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
            AL   GI       E + ++   S IFS         +      + HNA FD  FI A 
Sbjct: 64  SALDFTGIDPWNPEREAVPEREGLSEIFSPIRKAVKNHDCKRAVLVGHNATFDHNFIFAA 123

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             R  I ++P  P    DT ++A   +      L   CK  GI  S++  H A  D+   
Sbjct: 124 ALRADIRRNPFHPFSTFDTATLAGLAY--GHTVLAQACKLAGIPFSNKEAHSAAYDAEKT 181

Query: 168 SDVYIKMMVGGSQIN 182
           +D++  ++    ++ 
Sbjct: 182 ADLFCGIVNRWKELG 196


>gi|323439142|gb|EGA96870.1| DNA polymerase III alpha chain [Staphylococcus aureus O11]
 gi|323441573|gb|EGA99223.1| DNA polymerase III alpha chain [Staphylococcus aureus O46]
          Length = 157

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 9/161 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V+++D   T  TF   + P     S + +K+HGI  E
Sbjct: 6   FVALDFETA--NGKRTSICSVGMVKVIDSQIT-ETFHTLVNPQDY-FSQQNIKVHGIQPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P+F  +F     F    +   +AHNA FD+  ++  +Q I   P        +  
Sbjct: 62  DVENAPTFDYVFPYMMQFIA--DLPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQ 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           +A+R   S R  L  + + Y +       H AL D+   + 
Sbjct: 119 LAKRTVDSYRYGLKHMMEFYQLDF--HGHHDALNDAKACAM 157


>gi|311279254|ref|YP_003941485.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae
           SCF1]
 gi|308748449|gb|ADO48201.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae
           SCF1]
          Length = 219

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET  L      ++EI +V+++D   TN      + P+ R  SP+A+ +H IT+E +
Sbjct: 4   VIDTETCDLQGG---VVEIASVDIVDGKITNPMSH-LIRPD-RPISPQAMAIHRITEEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +         + +A ++AHNA FD   +          P      I T+ +A
Sbjct: 59  ADKPWIEEVVP-----LYQGSAWYVAHNASFDRRVL----------PEMNGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   +++        H AL D ++ + + I ++
Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVATPPGLHHHRALYDCYITAALLIDII 151


>gi|170720300|ref|YP_001747988.1| ribonuclease T [Pseudomonas putida W619]
 gi|169758303|gb|ACA71619.1| ribonuclease T [Pseudomonas putida W619]
          Length = 224

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV +    K       T+   + P  G      AL+  
Sbjct: 31  PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFYRVEPFEGANIEAAALEFT 90

Query: 64  GI-TDEFLKDKPSFS----SIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI  D  L+   S       IF            + A  + HN+ FD+GF+NA + R  +
Sbjct: 91  GIKLDHPLRMAVSEENALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVTRNDL 150

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+   I    R  H A  D+   ++++  
Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTAELFCG 208

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 209 IVNRWKEMG 217


>gi|194333861|ref|YP_002015721.1| DNA polymerase III subunit epsilon [Prosthecochloris aestuarii DSM
           271]
 gi|194311679|gb|ACF46074.1| DNA polymerase III, epsilon subunit [Prosthecochloris aestuarii DSM
           271]
          Length = 232

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 91/186 (48%), Gaps = 16/186 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +VFD ETTG D   D +I IGAV +++ S   + +F+V +  + R    +A+ +HG+ 
Sbjct: 44  RYVVFDTETTGFDLSRDNVISIGAVAVMNGSIDISDSFEVLIRCD-RVGDGDAVSVHGLL 102

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L    +       F ++    ++  +A +A FD+  +NA ++R     L  + ++DT
Sbjct: 103 RRDLVGGCNEREALDGFLNYIG--DSILVAQHAGFDIAMMNAIMRRHYHMELL-NDVLDT 159

Query: 127 LSIARRK---------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            S+A+R          H S    L+SL +RY I +  R  H +  D+ L + ++ +++  
Sbjct: 160 ASLAKRLEKGPYYNLAHKSGEYRLDSLLERYHIRLYDR--HTSAGDAFLTAQLFQRLLYS 217

Query: 178 GSQINF 183
            +    
Sbjct: 218 AASAGI 223


>gi|306835084|ref|ZP_07468126.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC
           49726]
 gi|304569032|gb|EFM44555.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC
           49726]
          Length = 231

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 7/148 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTG++ + DRIIE+ AV    +     ++   L P+G+    +   +HGIT++
Sbjct: 31  FAVIDTETTGVNKRYDRIIELAAVRADAHFNPVDSWHTLLSPDGKAI--KNSHIHGITND 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPLDPSRIID 125
            +   P+FS ++ +F  + +    + +AHNA FD   I AE+ R+        +    ID
Sbjct: 89  MVATAPTFSDVYGDFTSYID--GMQLLAHNAPFDSKMIIAEVDRMTGVGDSEDEYFPFID 146

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITIS 153
           T+ +A++       +L +L  R G+   
Sbjct: 147 TIDLAKQMLDHGPYNLPALLDRLGLNNP 174


>gi|225849248|ref|YP_002729412.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643190|gb|ACN98240.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 204

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 9/174 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +   +VFD ETTGL+ K D I+ IGAV++  +    N  F   + P  R+ + E +K+HG
Sbjct: 31  EDEYVVFDTETTGLNPKTDDILSIGAVKIKQNRILLNDRFYTVVKPE-REINEETIKIHG 89

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +  + L++         +F  F   +    + +   FDV  IN   ++I   PL P++ I
Sbjct: 90  LRKKDLENGIPIEKAIKDFLRFIGSR--PLVGYYIDFDVAMINKYTKKIIGIPL-PNKKI 146

Query: 125 DTLSIARRK----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +   +         P    DL       G+ I    KH AL D+ +   +++K+
Sbjct: 147 EVSGMYYDYKIGTIPQGFVDLRFDSILKGLKIPSFGKHDALNDAIMTGLIFLKL 200


>gi|169831719|ref|YP_001717701.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638563|gb|ACA60069.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 236

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 7/162 (4%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTGL     D +I +  V ++     N  F   + P  R+    A  + GIT 
Sbjct: 49  YSVIDTETTGLRPDAGDEVISVACVRVVSAKIQNDYFYTLVDPE-REVPELAATITGITT 107

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++ +P    +                  N +FD+ F+N  L+R     L+P  ++D L
Sbjct: 108 ERVQGQPVLEKVLPRMLREMA--GGVITGFNIQFDLVFLNNGLKRKCGTTLNPPMVLDVL 165

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168
           S+ R   P +R   L ++ + Y I++  R  H AL D+ + +
Sbjct: 166 SLCRILKPRARTFGLGAMAREYQISVKDR--HNALGDALITA 205


>gi|208435412|ref|YP_002267078.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27]
 gi|208433341|gb|ACI28212.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27]
          Length = 264

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 8/161 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 52  FIDLETTGSCPIKHEILEIGAVQVRGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 108

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 109 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 165

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +R   S R  L+ L +  G  I     H A  D+     ++
Sbjct: 166 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLF 204


>gi|167035320|ref|YP_001670551.1| ribonuclease T [Pseudomonas putida GB-1]
 gi|166861808|gb|ABZ00216.1| ribonuclease T [Pseudomonas putida GB-1]
          Length = 224

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV +    K       T+   + P  G      AL+  
Sbjct: 31  PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGANIEAAALEFT 90

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI  D  L+   S  S  ++              + A  + HN+ FD+GF+NA + R  +
Sbjct: 91  GIKLDHPLRMAVSEESALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARNDL 150

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+   I    R  H A  D+   ++++  
Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTAELFCG 208

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 209 IVNRWKEMG 217


>gi|206890301|ref|YP_002247886.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742239|gb|ACI21296.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 230

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 14/182 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D E TGL+   D II IGA+++   +      F   + P+ +K   E++ +H IT 
Sbjct: 24  FVVVDTELTGLNEFRDNIIAIGAIKMKGRTIKIGDIFYRTVSPSTKKFRKESIMIHEITP 83

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L+  P    I  EF  F   +N   + H    D+ F+  E++   ++  +P   IDTL
Sbjct: 84  SELEKCPQIEPILREFIKF--SKNCLVVGHCVDIDLTFLKKEIRNNLREIFEPFS-IDTL 140

Query: 128 SIARRKHPSS--------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            I +              +N L  +     + I  +  H AL D+ + + ++ +++    
Sbjct: 141 LIYKWLIKKEILPSDFSNKNSLEDIA--LSLDIEPKELHDALSDAFITAQIFQRLLAYLG 198

Query: 180 QI 181
           ++
Sbjct: 199 EL 200


>gi|28871300|ref|NP_793919.1| ribonuclease T [Pseudomonas syringae pv. tomato str. DC3000]
 gi|301384500|ref|ZP_07232918.1| ribonuclease T [Pseudomonas syringae pv. tomato Max13]
 gi|302130507|ref|ZP_07256497.1| ribonuclease T [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|37999382|sp|Q87XM0|RNT_PSESM RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|28854550|gb|AAO57614.1| ribonuclease T [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331015669|gb|EGH95725.1| ribonuclease T [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 225

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPN-GRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV    +   +     T+   + P  G      AL+  
Sbjct: 32  PVVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFT 91

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
           GI  D  L+   S  +  ++              + A  + HNA FD+GF+NA + R+  
Sbjct: 92  GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  
Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 210 IVNRWKEMG 218


>gi|261879422|ref|ZP_06005849.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
           bergensis DSM 17361]
 gi|270333990|gb|EFA44776.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
           bergensis DSM 17361]
          Length = 287

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 12/176 (6%)

Query: 2   IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  +  I+FD+ETTGLD   DRII+I  +++       R   +F+ P  +   P   
Sbjct: 1   MKLNLTKPLIIFDLETTGLDLATDRIIQISYIKVDPQGNEERK-SLFVNPE-KPIPPFVQ 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
           +L  ITD+ +KD P+F  I     + F     ++   N  +FDV  +  E  R   D   
Sbjct: 59  ELTHITDDMVKDAPTFKQIAKSLQETFA--GCDFAGFNSNRFDVPMLAEEFLRAGVDFDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY--GITISHRSKHGALLDSHLLSDVYI 172
              R+ID  +I  +  P    +L +  + Y           H A  D+     V  
Sbjct: 117 QRCRLIDAQNIFHKMEP---RNLAAAYRFYTGNKMEDDFQAHRADEDTEATYRVLQ 169


>gi|317154702|ref|YP_004122750.1| exonuclease RNase T and DNA polymerase III [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944953|gb|ADU64004.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 179

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 8/163 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D ET   D+K D    +G V ++D  +        + P  R+ +P  +++HGI  
Sbjct: 9   RFVAIDFETA--DAKRDSACAVGLV-VVDRGEIVARDYRLIRPPRRRFNPFCVQVHGIHW 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + D+P+F  ++ +    F   +   +AHNA FD   + A   R ++        + T+
Sbjct: 66  EDVADQPAFGELWPDLSPLFEGAD-FLVAHNASFDKSVLAACC-RESRCLPPVQPFLCTV 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            +AR       N L ++C   GIT++H   H A  D+   + +
Sbjct: 124 QLARTTWQLPSNKLPNVCCHLGITLTH---HHAASDAEACARI 163


>gi|224438091|ref|ZP_03659030.1| DNA polymerase III subunit epsilon [Helicobacter cinaedi CCUG
           18818]
          Length = 233

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 8/168 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             +   +  DIET G   ++  IIEIGA+ + + S+   +F+ ++            +L 
Sbjct: 47  WQEGEFVFVDIETNGAKPQSSEIIEIGALRVKN-SQILESFESYVYAPF--VPENITELT 103

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI  E +++ P    +   F +F       ++AHN  FD  F++  L++     L  +  
Sbjct: 104 GIRQEDIQNAPQSKEVLRAFREFLG--GGVFVAHNVNFDFSFLDYHLRQNGLFGLL-NPK 160

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           + T+ +A++   S R  L+ L +  GI  +    H A  D+     ++
Sbjct: 161 LCTIDLAKKTILSKRYALSYLNEFLGINTAM--SHRAYADALTSFRIF 206


>gi|330877336|gb|EGH11485.1| ribonuclease T [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330966675|gb|EGH66935.1| ribonuclease T [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 225

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPN-GRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV    +   +     T+   + P  G      AL+  
Sbjct: 32  PVVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFAGANIEAAALEFT 91

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
           GI  D  L+   S  +  ++              + A  + HNA FD+GF+NA + R+  
Sbjct: 92  GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  
Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 210 IVNRWKEMG 218


>gi|219850553|ref|YP_002464986.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM
           9485]
 gi|219544812|gb|ACL26550.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM
           9485]
          Length = 233

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 20/199 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLC-PNGRKNSPEA 59
           +   ++   V D+ETTGLD ++D +I IGAV + +      +T+   +  P GR+ S E+
Sbjct: 31  LPWREVPYTVIDVETTGLDPRHDALIAIGAVNVENGRVLLKQTWHSLIRPPPGREPSVES 90

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ----RINK 115
           +++H +T E L+D P  + + +E       +    + H A+ DV FINA L+    R+ +
Sbjct: 91  IRVHHLTPEELRDAPPPAEVLAELLRLIAGR--VLVVHVAEIDVRFINAALKPFGGRLRR 148

Query: 116 DPLDPSRIIDTLSIAR-------RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             LD +R+  TL +         R  P+   +L  L    G+ I   ++H AL D+   +
Sbjct: 149 PILDTARLAMTLHLNAQWLGELPRDMPAPAVELRGLTGALGLPIY--AQHNALNDAVTTA 206

Query: 169 DVYIK---MMVGGSQINFG 184
            ++I    ++    + N  
Sbjct: 207 QLFIAQATLLADQGRNNLA 225


>gi|242371797|ref|ZP_04817371.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           M23864:W1]
 gi|242350498|gb|EES42099.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           M23864:W1]
          Length = 213

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V+++D   T  +F   + P     +   + +HGI  E
Sbjct: 35  FVALDFETA--NGKRTSICSVGMVKVIDNQIT-ESFYTLVNPFDY-FTETNINVHGIKPE 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PSF  ++     F ++     +AHNA FD+  ++  L+++N +         +  
Sbjct: 91  DVEGAPSFEYVYPYMLQFIDQ--LPVVAHNAAFDMNVLHQSLKQLNIET-PSMTYFCSYQ 147

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+R   + R  L  L   Y +       H AL D+   + +  +++
Sbjct: 148 LAKRTIDAYRYGLKHLMNHYKLDF--HGHHDALNDAKACAMITFRLL 192


>gi|487436|gb|AAA18178.1| DNA polymerase III [Mycoplasma pulmonis]
 gi|1090178|prf||2018296A DNA polymerase III
          Length = 1435

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 6/168 (3%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
               +V+DIETTGL    + +I+ GA  + +      T   F+ P   K      KL GI
Sbjct: 401 DQEYVVYDIETTGLSPMLNELIQFGASVIKNGRII-ETHHFFIKPKS-KLDSFTTKLTGI 458

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E L+          +    F  +    +AHNA FD  F+  +    N +  +    ID
Sbjct: 459 TQEHLEKGYELQEALEKISSIFKAR--IMVAHNAAFDHNFLKQKFIDNNIE-FEEMISID 515

Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           TL++A+  +P  R   L  +  +  +       H A  DS +L++++I
Sbjct: 516 TLNLAKVLNPIYRSYRLGEVASKLSVVYDPSIAHRADYDSSVLTNIFI 563


>gi|15829146|ref|NP_326506.1| DNA polymerase III PolC [Mycoplasma pulmonis UAB CTIP]
 gi|14424449|sp|P47729|DPO3_MYCPU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14090090|emb|CAC13848.1| DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII) [Mycoplasma
           pulmonis]
          Length = 1435

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 6/168 (3%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
               +V+DIETTGL    + +I+ GA  + +      T   F+ P   K      KL GI
Sbjct: 401 DQEYVVYDIETTGLSPMLNELIQFGASVIKNGRII-ETHHFFIKPKS-KLDSFTTKLTGI 458

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E L+          +    F  +    +AHNA FD  F+  +    N +  +    ID
Sbjct: 459 TQEHLEKGYELQEALEKISSIFKAR--IMVAHNAAFDHNFLKQKFIDNNIE-FEEMISID 515

Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           TL++A+  +P  R   L  +  +  +       H A  DS +L++++I
Sbjct: 516 TLNLAKVLNPIYRSYRLGEVASKLSVVYDPSIAHRADYDSSVLTNIFI 563


>gi|27904678|ref|NP_777804.1| ribonuclease T [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|29611836|sp|P59497|RNT_BUCBP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|27904075|gb|AAO26909.1| ribonuclease T [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 217

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 18/207 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGRKNSP 57
           R      +V DIET G + + D I+EI  + L        +        + P  G +   
Sbjct: 13  RFRTFYPVVIDIETAGFNPETDAILEIAIITLKMNEFGLLEKEHLLHFHIQPFKGSRIDK 72

Query: 58  EALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109
           +A++ HGI     L+   S        ++         N   +  +AHNA FD  F+ A 
Sbjct: 73  KAIEFHGIDPFSPLRRAISEYEALYSIFNLIHKGIKSNNCTKSIIVAHNAIFDYNFLTAA 132

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           + R  I  +P     I DT +++       +  L   CK  G+T  +   H AL D+   
Sbjct: 133 ITRTKIKNNPFHSFVIFDTATLSGLA--VGQTVLARACKAIGLTFDNNQAHSALYDTQQT 190

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFK 194
           ++++ K++     +  G+  N+ R  K
Sbjct: 191 ANLFCKIVNRWKTLG-GWPPNDTRTIK 216


>gi|312872015|ref|ZP_07732095.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2062A-h1]
 gi|312873705|ref|ZP_07733751.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2052A-d]
 gi|315653310|ref|ZP_07906232.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners ATCC 55195]
 gi|325911899|ref|ZP_08174303.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 143-D]
 gi|311090805|gb|EFQ49203.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2052A-d]
 gi|311092468|gb|EFQ50832.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2062A-h1]
 gi|315489235|gb|EFU78875.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners ATCC 55195]
 gi|325476405|gb|EGC79567.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 143-D]
          Length = 177

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET   +   D    +  V + D    + +F   + P         +K+HGIT
Sbjct: 1   MNFTAMDFETA--NRHYDSACSLALVLVRDNKIID-SFYTVINPQ-MPFDKNNIKIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +KD P+   ++ +      +     +AHNA+FD   +   L++ N         IDT
Sbjct: 57  ANDVKDAPTMDEVWPKIR-LLFQPGMLVVAHNARFDCNVMKKSLKKYNIAE-PHYLTIDT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L+ +R   P+ +N  L+++  +  I + H   H AL DS   +++ IK
Sbjct: 115 LATSRALIPNLKNYRLDTVSNQLNIDLWHH--HNALSDSEACAEILIK 160


>gi|218261817|ref|ZP_03476532.1| hypothetical protein PRABACTJOHN_02203 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223763|gb|EEC96413.1| hypothetical protein PRABACTJOHN_02203 [Parabacteroides johnsonii
           DSM 18315]
          Length = 256

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 86/210 (40%), Gaps = 15/210 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    K   + FD+ETTG++   DRI+EI  V++    K   +    + P      PE+ 
Sbjct: 1   MQLNLKNPLVFFDLETTGINIVKDRIVEISFVKVYPNGK-EESKTRRINPE-MPIPPEST 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
            +HGITDE +KD P+F  I          +  +   +N  +FD+  +  E  R   D  L
Sbjct: 59  AIHGITDEDVKDCPTFKEIAKSLATQI--EGCDLAGYNSNRFDIPLLAEEFLRAGVDIDL 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +  + ID  +I    H   +  L++  K Y    S  + H A  D+    +V    +   
Sbjct: 117 NRRKFIDVQTI---FHKMEQRTLSAAYKFY-CDKSLENAHTAEADTMATYEVLKAQLDRY 172

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
            ++      N+  F  +      N+    R
Sbjct: 173 PELQ-----NDIDFLSKYSSYTNNVDFAGR 197


>gi|297808725|ref|XP_002872246.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318083|gb|EFH48505.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 316

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 19/184 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +  IV D+ETTGL+ K +RIIEI A +L        TFQ  + P           +HGI 
Sbjct: 109 LTVIVSDLETTGLNRKRERIIEIAAQDLAGGGY--STFQTLVNPGDVPV--TNTDIHGIR 164

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHN-AKFDVGFINAELQRINKDPL 118
            + +   + P    +   F  +   +         +AHN   FD  F+  E  R + +  
Sbjct: 165 TDMVCRPEVPRMEELIPIFLQYVESRQKPGGYVMLVAHNGKSFDFRFLINEFNRCSYEIP 224

Query: 119 DPSRIIDTL----SIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               ++D+L       +   P+ +    L  L + Y +T      H AL D  LLS V+ 
Sbjct: 225 HNWLLLDSLPLGREHMKSLDPTGKPKASLKVLQEHYSLTREG-DAHRALSDVLLLSKVFQ 283

Query: 173 KMMV 176
           K+ +
Sbjct: 284 KLTI 287


>gi|327479762|gb|AEA83072.1| ribonuclease T [Pseudomonas stutzeri DSM 4166]
          Length = 224

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+E  G +   D ++EI AV +    +       T    + P  G    P
Sbjct: 25  RFRGFLPVVIDVECGGFNCATDALLEIAAVTVGMDEQGLLYPQDTLFYRVEPFAGANIEP 84

Query: 58  EALKLHGI-TDEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109
            AL+  GI  D  L+         ++ +            + A  + HN+ FD+GF+NA 
Sbjct: 85  AALEFTGIKLDHPLRMAVPEQQALTDIFRSVRKAVKSAGCKRAILVGHNSSFDLGFLNAA 144

Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           + R    ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   
Sbjct: 145 IARCEIKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKT 202

Query: 168 SDVYIKMMVGGSQIN 182
           ++++  ++    ++ 
Sbjct: 203 AELFCGIVNRWKEMG 217


>gi|313123567|ref|YP_004033826.1| 3'-5' exonuclease with to crispr-associated protein [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280130|gb|ADQ60849.1| 3'-5' exonuclease with to CRISPR-associated protein [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 290

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 13/169 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIETTGL++++D+I+ IGAV+          F   +         + ++L GIT  
Sbjct: 126 FVAVDIETTGLNTESDQILSIGAVKHD-----GTEFYRLIK-QDIDVPKQIVELTGITPA 179

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L K+      +  E  DF    +   + +N +FD  F+N E ++     L  + I D L
Sbjct: 180 MLDKEGVPLQDVLGELTDFVG--DVPIVGYNFRFDSAFLNREYRKCGMQEL-KNEIKDLL 236

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            + +RK        L ++   YGI   ++  H A+ D+    ++ +K++
Sbjct: 237 PVVKRKEKFLDNYKLQTVLSNYGIE--NKVPHNAVSDARATKELAMKLI 283


>gi|15645997|ref|NP_208178.1| DNA polymerase III subunit epsilon [Helicobacter pylori 26695]
 gi|2314554|gb|AAD08426.1| DNA polymerase III epsilon subunit (dnaQ) [Helicobacter pylori
           26695]
          Length = 350

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 90/231 (38%), Gaps = 16/231 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 111 FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 168 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 224

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           +R   S R  L+ L +  G  I     H A  D+     ++   ++     ++   T + 
Sbjct: 225 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNL--PSYIKTTMDL 280

Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEELDE----HDKTIQTLGKNAIW 237
             F +   T+       R + + +  +  E  +    H      L ++ + 
Sbjct: 281 IDFSKCANTLIKRPPKARYQEIPSPFSLFEKTKGLFNHKSN--QLNESCLM 329


>gi|312978151|ref|ZP_07789895.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus crispatus CTV-05]
 gi|310894869|gb|EFQ43939.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus crispatus CTV-05]
          Length = 926

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 9/171 (5%)

Query: 6   KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K    V D+ETTG   +N   II+ G   + +  K  +T+   + P+ R+     + L G
Sbjct: 7   KDTFAVVDLETTGTQRENGHHIIQFGCAIIKNR-KVVKTYSFLINPH-REIPQSVVNLTG 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I D+ +  +  F     +       QN  ++AHN  FD+ F+N EL +   + L  ++ I
Sbjct: 65  IHDQDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAI 121

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           DT+ +A+   P+     L+ L  + GI   H   H A  D++  + + +++
Sbjct: 122 DTVELAKIAFPTFPSYKLSDLTTQLGIK--HLDPHKADSDAYGTAVLLLEI 170


>gi|303326602|ref|ZP_07357044.1| exonuclease [Desulfovibrio sp. 3_1_syn3]
 gi|302862590|gb|EFL85522.1| exonuclease [Desulfovibrio sp. 3_1_syn3]
          Length = 175

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 10/165 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET+G  + +   + +     ++  +    F   L P   +      ++HG+T   
Sbjct: 9   VAIDFETSGYAAHSACAVGLA---RIEDGRVTDCFYRLLRPPSARVL--FTEIHGLTWPM 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+D PSF+  + E            +AHNA FD   + A  +     P   +  + TL  
Sbjct: 64  LRDAPSFAQAWPE-AGAILCGAHFLLAHNASFDRRVLLACCRAAGL-PAPEAPFLCTLKG 121

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +RR  P     LN +C+ +GI + H   H A  D+   ++VY+++
Sbjct: 122 SRRSLPLPSKKLNLVCEYFGIALKH---HNAASDAQACAEVYLRL 163


>gi|330957749|gb|EGH58009.1| ribonuclease T [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 225

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPN-GRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV    +   +     T+   + P  G      AL+  
Sbjct: 32  PVVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFAGANIEAAALEFT 91

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
           GI  D  L+   S  +  ++              + A  + HNA FD+GF+NA + R+  
Sbjct: 92  GIKLDHPLRMAVSEETALNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  
Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 210 IVNRWKEMG 218


>gi|163848613|ref|YP_001636657.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526548|ref|YP_002571019.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl]
 gi|163669902|gb|ABY36268.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450427|gb|ACM54693.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl]
          Length = 278

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 12/183 (6%)

Query: 10  IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I FD+ETTGL+ +   RI E+  +      +  R     + P  R+  P+A +++G+   
Sbjct: 16  IFFDVETTGLEIQAGHRICEVAMLRWEHGQEVGR-INTLINPE-RELDPQAAQINGLQPA 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L + P F+ I  +       QNA  IAHN  FD  F+N EL R    P      +DTL 
Sbjct: 74  ELNNAPLFTDIAPQVVQL--SQNAVRIAHNLPFDESFLNMELCRAGYPPF-TGPALDTLE 130

Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR         L +L   +G+       H A+ D   L  ++   +     I+FG  T
Sbjct: 131 LARRLGIRRGSLSLAALATTFGLPAP---THRAMDDVLTLRALFDHFVN--EMISFGIIT 185

Query: 188 NED 190
             D
Sbjct: 186 LGD 188


>gi|314934059|ref|ZP_07841422.1| exonuclease [Staphylococcus caprae C87]
 gi|313653170|gb|EFS16929.1| exonuclease [Staphylococcus caprae C87]
          Length = 184

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V++++   T  +F   + P     +   + +HGI  E
Sbjct: 6   FVALDFETA--NGKRTSICSVGMVKVINNQIT-ESFYTLVNPFDY-FTETNINVHGIRPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D PSF  ++     F NE     +AHNA FD+  ++  L+ +N +         +  
Sbjct: 62  DVEDAPSFEYVYPYMLQFINE--LPVVAHNAAFDMNVLHQSLKSLNIET-PSMTYFCSYQ 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+R   + R  L  L   Y +       H AL D+   + +  +++
Sbjct: 119 LAKRTIDAYRYGLKHLMNHYQLDF--HGHHDALNDAKACAMITFRLL 163


>gi|182418640|ref|ZP_02949917.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521]
 gi|237668503|ref|ZP_04528487.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377502|gb|EDT75056.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521]
 gi|237656851|gb|EEP54407.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 308

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 106/258 (41%), Gaps = 40/258 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      IG V + + S+        + P   +  P  + +HGI 
Sbjct: 1   MDYIAIDFETA--NEKRSSPCSIGIVVVKN-SEVVEKIHYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++++P F  I+     +F+  N   IAHNA FD+  +   ++  N +P+   + I T
Sbjct: 58  PGMVENEPEFDEIWKRIKGYFD--NGFVIAHNASFDISVLRRTMELYNIEPVS-FKYICT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM----------- 174
           + +++  +P    + LN++ +  G    H   H AL D+   S++ I +           
Sbjct: 115 MKLSKNFYPQIENSKLNTVNRFLGYEFDH---HDALADALACSNILINISKELGNEDIDE 171

Query: 175 --------MVGGSQINFGFKTNEDRFFKEEKKTV----------PNISLLKRDKPLFT-R 215
                   +   ++  +   + + R F++  +            PN  + K D  +FT R
Sbjct: 172 ICRCVGVTIGNVNEEGYKPSSAKGRIFRKSSRVSSCNNSNSLGNPNYDVFKGDTVVFTGR 231

Query: 216 ITKEELDEHDKTIQTLGK 233
           ++    DE  + ++ LG 
Sbjct: 232 LSSMTRDEAIRLVRRLGG 249


>gi|309791196|ref|ZP_07685728.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
 gi|308226758|gb|EFO80454.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
          Length = 272

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 99/216 (45%), Gaps = 12/216 (5%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            + +  + FD+ETTGLD +   R+ E+  + +   +         L P+ R   PEA  +
Sbjct: 9   LDDLPLVFFDLETTGLDLRAGHRVCELALLRVR-GAAVEDYLGSALRPD-RLLDPEAAAV 66

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           +G  D  L+  P F+S+            A  IAHN  FD+ F+NAEL RI + PL    
Sbjct: 67  NGFQDAELRGAPRFASVAGRVQRM--AHGAVLIAHNLPFDMAFLNAELARIGQPPLASVT 124

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +DTL +ARR        L +L + +G+    R  H AL D   L  V+ ++ +  +++ 
Sbjct: 125 -LDTLVLARRLLRRPSYSLAALAEHFGLP---RPTHRALADVLALRGVFAQLQLAMAEL- 179

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
            G  T +D   + E+   P ++       +   + +
Sbjct: 180 -GVTTLQD-VLRLERGLAPGVAEPNAPAIIAQALAE 213


>gi|163782941|ref|ZP_02177936.1| hypothetical protein HG1285_00160 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881621|gb|EDP75130.1| hypothetical protein HG1285_00160 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 215

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 89/184 (48%), Gaps = 10/184 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALK 61
           +  +   +VFD ETTGLD +   ++ IGA+ +++YS   + +F  F+ P  ++ +  +++
Sbjct: 34  KVEETTFVVFDTETTGLDLRRAELVSIGALRVVNYSFNLSESFHRFVKP--KELTRVSVE 91

Query: 62  LHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +HGIT   L K   S   +  +F ++   + +  +  N +FD   +     ++   PL  
Sbjct: 92  IHGITPHELEKKAESHDRVLEDFMEYV--RGSVLVGFNVEFDRKIVEKYSLKVLGLPLLN 149

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            R +D   + +++       L  + +  GI +     H AL D+++ + V++K++     
Sbjct: 150 YR-LDVFRLWKKRG-GREGSLKDIAEELGIPVVG--AHSALDDAYITALVFLKLLKRFRG 205

Query: 181 INFG 184
            N  
Sbjct: 206 ANLS 209


>gi|262277835|ref|ZP_06055628.1| DNA polymerase III PolC-type (PolIII) [alpha proteobacterium
           HIMB114]
 gi|262224938|gb|EEY75397.1| DNA polymerase III PolC-type (PolIII) [alpha proteobacterium
           HIMB114]
          Length = 223

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 7/178 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59
           I  + +   VFD ETTGL+    D+II +  V++ ++   T      F  P   + +PE 
Sbjct: 20  IDISDVTFSVFDTETTGLNYNSGDKIISVSGVKVQNFQIDTEGKLDEFCDP-MVEITPEN 78

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PL 118
            ++H I++  +K KP+   + S+F  FF    +  +AHN KFD  F+ + L     +  +
Sbjct: 79  EQIHHISNRMVKGKPNIYDLESKFRGFFKR--SVLVAHNVKFDCNFLISNLSHTKLESRI 136

Query: 119 DPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +  +DT+  +   +P  +  +L++LC    IT   + +H +L DS + + ++I ++
Sbjct: 137 REAVKLDTVLYSAGVYPDLKSYELSALCDELNITHHDQLRHSSLGDSIITARLFIHLL 194


>gi|325275194|ref|ZP_08141161.1| ribonuclease T [Pseudomonas sp. TJI-51]
 gi|324099681|gb|EGB97560.1| ribonuclease T [Pseudomonas sp. TJI-51]
          Length = 224

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV +    K       T+   + P  G      AL+  
Sbjct: 31  PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGANIEAAALEFT 90

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI  D  L+   S  +  ++              + A  + HN+ FD+GF+NA + R  +
Sbjct: 91  GIKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARNDV 150

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+   I    R  H A  D+   ++++  
Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTAELFCG 208

Query: 174 MMVGGSQIN 182
           ++     + 
Sbjct: 209 IVNRWKDLG 217


>gi|260102980|ref|ZP_05753217.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
 gi|260083211|gb|EEW67331.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
 gi|328464560|gb|EGF35931.1| DNA polymerase III [Lactobacillus helveticus MTCC 5463]
          Length = 317

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 6/164 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + D+ETTGL    DRI E+G V++ +    ++   +   P   K      KL+GIT+E
Sbjct: 33  YTMLDVETTGLSPFRDRITELGGVKVRNGQIVDQYTNLVKFPKNNKVPAFITKLNGITEE 92

Query: 69  FLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L  +         EF +F  +     I +N  FD+ F+    Q+ N  P+  +  +D L
Sbjct: 93  QLTNEGIPAEQAIKEFREFIGDD--TIIGYNVNFDLNFLYDLSQKYNL-PVLNNDYVDVL 149

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +AR  +P   N L    +R GI  +   +H  L DS     VY
Sbjct: 150 RLARVYYPRQHNRLIDCMQRAGI--AQVEQHHGLADSLDTIKVY 191


>gi|229588692|ref|YP_002870811.1| ribonuclease T [Pseudomonas fluorescens SBW25]
 gi|229360558|emb|CAY47415.1| ribonuclease T [Pseudomonas fluorescens SBW25]
          Length = 223

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +   D ++EI A    ++   +     T    + P  G      AL+  
Sbjct: 30  PVVIDVETGGFNCATDALLEIAATTIGMDEQGFVFPEHTHFFRVEPFEGANIEAAALEFT 89

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI  D  L+   S  +  ++              + A  + HN+ FD+GF+NA + R  +
Sbjct: 90  GIKLDHPLRMAVSEEAALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDM 149

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  
Sbjct: 150 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 207

Query: 174 MMVGGSQIN 182
           ++    Q+ 
Sbjct: 208 IVNRWKQMG 216


>gi|170769422|ref|ZP_02903875.1| exodeoxyribonuclease X [Escherichia albertii TW07627]
 gi|170121746|gb|EDS90677.1| exodeoxyribonuclease X [Escherichia albertii TW07627]
          Length = 220

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D    N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVVDGKIVNPMSH-LVRPD-RPITPQAMAIHRITESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|307720491|ref|YP_003891631.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978584|gb|ADN08619.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
          Length = 269

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   +    + DIET G   +  +IIE+ AV++ +    +R F+  +  + ++ +P   +
Sbjct: 62  IPIQEAEFCIVDIETNGSKIEKHQIIELAAVKVKNGQIIDR-FESLV--HTKEINPHITE 118

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           + GI  +   + P    +   F  F    NA ++AH+ KFD  FI+  LQ+I  +PL  +
Sbjct: 119 ITGIAADDTTNAPQLKDVLIRFKLFLG--NAVFVAHDVKFDYSFISKSLQKIGLEPLL-N 175

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           R + +L++A R   S R  L+ L +   +    R  H A+ D      ++   ++    +
Sbjct: 176 RSLCSLALAERTVVSYRYALSYLNETLKLNPKAR-HHRAMSDVITTYGLF---LLSLDNL 231

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
           +   KT ED    +  K  P +   K D  L
Sbjct: 232 DENIKTVEDLI--KFSKEAPRLKRPKFDPLL 260


>gi|298737180|ref|YP_003729710.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8]
 gi|298356374|emb|CBI67246.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8]
          Length = 323

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 8/161 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 111 FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 168 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 224

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +R   S R  L+ L +  G  I     H A  D+     ++
Sbjct: 225 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLF 263


>gi|154148582|ref|YP_001406342.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC
           BAA-381]
 gi|153804591|gb|ABS51598.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC
           BAA-381]
          Length = 262

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 15/209 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  ++      DIET G      +IIEIGA+++    +   TF+ F+           ++
Sbjct: 68  ISLDEADFCFVDIETNGG-IDKGQIIEIGAIKVR-AKEILNTFKTFV--YASNIPENIVE 123

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GI    LK+ P  S++   F  F    ++ ++AHN KFD GFI+  LQ+I    L  +
Sbjct: 124 LTGIHTNDLKNAPHLSNVLENFRLFLG--DSVFVAHNVKFDYGFISESLQKIGFGGLL-N 180

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           R IDT+ +A+R   + +  L+SL +  GI   H   H A  D+    +++        ++
Sbjct: 181 RRIDTIDLAKRTIAAQKYGLSSLKELLGIENEH---HRAFSDALSCYEIFKFCT---QKL 234

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
            +  +T ED    E  KT  +++L K +K
Sbjct: 235 PWYVQTIEDLI--EFSKTAKSLALPKTNK 261


>gi|288934625|ref|YP_003438684.1| exonuclease RNase T and DNA polymerase III [Klebsiella variicola
           At-22]
 gi|290508826|ref|ZP_06548197.1| exodeoxyribonuclease X [Klebsiella sp. 1_1_55]
 gi|288889334|gb|ADC57652.1| Exonuclease RNase T and DNA polymerase III [Klebsiella variicola
           At-22]
 gi|289778220|gb|EFD86217.1| exodeoxyribonuclease X [Klebsiella sp. 1_1_55]
          Length = 219

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++D   TN      + P+ R  +P+A+ +H IT+E +
Sbjct: 4   VIDTETCGLQGG---IVEIASVDIVDGRITNPMSH-LVRPD-RPITPQAMAIHRITEEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I   +       +  ++AHNA FD   +          P      I T+ +A
Sbjct: 59  ADKPWIEEIIPHYL-----GSPWYVAHNASFDRRVL----------PEMSGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +     L K   + +        H AL D ++ + + + ++
Sbjct: 104 RRLWPGIKYSNMGLYKSRKLNVATPPGLHHHRALYDCYITAALLLDII 151


>gi|295424856|ref|ZP_06817571.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664]
 gi|295065422|gb|EFG56315.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664]
          Length = 934

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 9/178 (5%)

Query: 6   KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K    V D+ETTG   + N+ II+ G   ++   K  +T+   + P+ R+       L  
Sbjct: 7   KDTFAVVDLETTGTQRENNNHIIQFGC-AIIKNMKVVKTYSFMINPH-REIPLSVQNLTR 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I +E ++  P FS    +       ++  ++AHN  FD+ F+N EL +     L  ++ I
Sbjct: 65  IHNEDVEKAPDFSHYAKKIIAIL--EDTVFVAHNVNFDLPFLNYELMQHGYPAL-TNKAI 121

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           DT+ +A+   P+     L+ L  R  I   H + H A  D++  + + I ++    ++
Sbjct: 122 DTVELAKIAFPTLPSYKLSDLTSRLAIK--HLNPHKADSDAYGTAILLIDIIHRLEKL 177


>gi|168462596|ref|ZP_02696527.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195633859|gb|EDX52211.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 232

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 23/169 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +          P  P   I T+ ++
Sbjct: 59  ADKPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLS 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176
           RR  P  +    +L K   +++        H AL D ++ + + I +M 
Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMR 152


>gi|314055097|ref|YP_004063435.1| putative exonuclease RNase T and DNA polymerase III [Ostreococcus
           tauri virus 2]
 gi|313574988|emb|CBI70001.1| putative exonuclease RNase T and DNA polymerase III [Ostreococcus
           tauri virus 2]
          Length = 447

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 22/229 (9%)

Query: 7   MRKIVFDIETTGL---------------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
           M  I FD ET+GL               +    R + + A       +  +TF   + PN
Sbjct: 5   MNYIAFDFETSGLPRGRRNTKVTHETLSNFDGCRAVSLSAARFSQRGRLIKTFDAIIRPN 64

Query: 52  GRKNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           G +   E++ +HGI++E  L +   F  +F +F +F   +    +AHNA+FD   + +E+
Sbjct: 65  GFQIGEESIAIHGISNEKALSEGRPFPDVFKDFMEFIGPRTKTLVAHNAQFDTSVLQSEM 124

Query: 111 QRINKDPLDPSRII--DTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLL 167
            R          ++   TL + R +       L  L    +G    +   H +L DS   
Sbjct: 125 LRHGIPLEQIDDLVIRCTLEMYRDRF-MGPIKLTKLYADIFGEEFDN--AHNSLADSIAC 181

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             VY  ++    +        +         +   I+  K+ + L   +
Sbjct: 182 GRVYPYLLGQTERTLKPLPIKKVIIGASSVASAIGINQYKKPQELVEEL 230


>gi|152970907|ref|YP_001336016.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238895421|ref|YP_002920156.1| exodeoxyribonuclease X [Klebsiella pneumoniae NTUH-K2044]
 gi|150955756|gb|ABR77786.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238547738|dbj|BAH64089.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 219

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++D   TN      + P+ R  SP+A+ +H IT+E +
Sbjct: 4   VIDTETCGLQGG---IVEIASVDIVDGQITNPMSH-LVRPD-RPISPQAMAIHRITEEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I   +       +  ++AHNA FD   +          P      I T+ +A
Sbjct: 59  ADKPWIEEIIPHYH-----GSPWYVAHNASFDRRVL----------PEMHGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +     L K   + +        H AL D ++ + + + ++
Sbjct: 104 RRLWPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYITAALLLDII 151


>gi|149179899|ref|ZP_01858404.1| DNA polymerase III, alpha subunit [Bacillus sp. SG-1]
 gi|148852091|gb|EDL66236.1| DNA polymerase III, alpha subunit [Bacillus sp. SG-1]
          Length = 245

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGIT 66
             +FD+ETTG   +  D I+ IGA+++      ++ TF   + P  +  S E  +  G+ 
Sbjct: 63  FTIFDLETTGFFPEIGDEIVSIGAIKMQGNKILDQKTFYEVINP-LQNVSLETKRFTGLR 121

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                   +      +F +F   +    +AH A FD+ F+   +++ +    +P   ID+
Sbjct: 122 RTDFIKAKTLPVGLKDFLEFC--KGTILVAHPASFDINFLQKRIRKWDLPSFEP-EYIDS 178

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            ++A+      +  L+ L K++ I  S +++H AL D+ + ++V+ ++++   +
Sbjct: 179 YALAKELLNEQKCYLDDLVKKFQI--SEKTRHHALNDAIMTAEVFQELLILCKE 230


>gi|317014965|gb|ADU82401.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           Gambia94/24]
          Length = 287

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 8/161 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVRGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 132 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +R   S R  L+ L +  G  I     H A  D+     ++
Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLF 227


>gi|297584199|ref|YP_003699979.1| DNA polymerase III subunit epsilon [Bacillus selenitireducens
           MLS10]
 gi|297142656|gb|ADH99413.1| DNA polymerase III, epsilon subunit [Bacillus selenitireducens
           MLS10]
          Length = 242

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 10/174 (5%)

Query: 5   NKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALK 61
           + +   VFD+ETTG      D ++ IGA + L+ ++ +    F   + P  +  S     
Sbjct: 56  DNITFTVFDLETTGFFCNLGDEVLAIGATK-LNRNRIDFPEQFYEVIEP-VKPMSAFVSN 113

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+T E +    +F   FS+F +F   + +  +AH A FDV F+     R      DP 
Sbjct: 114 LTGMTHEEVTAGLAFPEAFSKFLEF--SKGSILVAHPASFDVQFLKILADRWRLHGYDP- 170

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             ID   +A+  +P  RN L+ L K Y I  S R  H AL D+++ + V+  ++
Sbjct: 171 LYIDQYQLAKSLYPRKRNSLDELIKLYQIETSGR--HHALADAYMTATVFHHLL 222


>gi|144901019|emb|CAM77883.1| DNA polymerase III epsilon chain-like protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 619

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 84/177 (47%), Gaps = 11/177 (6%)

Query: 3   RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60
           + + +  + FD ETTGL   + DR+I++GAV +         +F+  + P G     +++
Sbjct: 424 KLSDLTFVAFDCETTGLRPDQGDRLIQVGAVRIGQGRVLSGESFERLIDP-GIPIPAQSM 482

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
             HGI+++ +K KP  + +  +F  F          HN  FD+ F++A           P
Sbjct: 483 AYHGISNDMVKGKPPLAVVLPQFAAFAGASALAG--HNVAFDLKFLHAAQGETGIALRQP 540

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMV 176
             ++DT+ +A    P     L ++  R G+  + HR    AL D+ + +++  +++ 
Sbjct: 541 --VLDTMILAALLDPGYDLSLEAVAGRLGVPPLPHR---SALSDALVTAEILARLIA 592


>gi|33593048|ref|NP_880692.1| putative exonuclease [Bordetella pertussis Tohama I]
 gi|33563423|emb|CAE42302.1| putative exonuclease [Bordetella pertussis Tohama I]
 gi|332382461|gb|AEE67308.1| putative exonuclease [Bordetella pertussis CS]
          Length = 224

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 68/168 (40%), Gaps = 10/168 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R      +V D+ETTGL      I+E  AV +    +  R F   +  +GR   P   +
Sbjct: 50  LRALDGPFVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVRTDGRVL-PFISR 108

Query: 62  LHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           L GIT   + +D       F +F DF   +      HNA FD  F+ A   R        
Sbjct: 109 LTGITQAEVERDGVPVRQAFGDFLDFI--EGGPLFFHNASFDRRFLQAAADRTGLPF--E 164

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           ++   TL +AR+  P    + LN L +  G   +    H AL D    
Sbjct: 165 AQTHCTLMLARQAWPELPSHKLNVLARHLG---ASEPTHRALADVRTT 209


>gi|188995649|ref|YP_001929901.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis
           ATCC 33277]
 gi|188595329|dbj|BAG34304.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis
           ATCC 33277]
          Length = 259

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 91/211 (43%), Gaps = 16/211 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   I FD+ETTG+D   DRI+EI  ++++ D S+  +T    + P  R   PE+
Sbjct: 1   MKLNLKNPLIFFDLETTGVDLVRDRIVEISILKVMPDGSEECKT--RRINPE-RSIPPES 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP- 117
             +HGITDE +KD P F S+      +   +  +    N  +FDV  +  E  R   D  
Sbjct: 58  TAIHGITDEDVKDCPPFRSVAKSLAQWI--EGCDLAGFNSTRFDVPMLVEEFLRAGVDID 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   ++ID  +I  +  P     L +  + Y    +  + H A  D+    DV+   +  
Sbjct: 116 LRHRKLIDVQTIFHKMEP---RTLEAATRFY-CNRTLENAHSAEADTRATYDVFKAQLDR 171

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
                 G   N+  F  +  +   N+    R
Sbjct: 172 YE----GTLENDMAFLADFSRQSRNVDFAGR 198


>gi|194442926|ref|YP_002041143.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194401589|gb|ACF61811.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 232

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 23/169 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +          P  P   I T+ ++
Sbjct: 59  ADKPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLS 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176
           RR  P  +    +L K   +++        H AL D ++ + + I +M 
Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMR 152


>gi|168241502|ref|ZP_02666434.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194450291|ref|YP_002045931.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194408595|gb|ACF68814.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205339659|gb|EDZ26423.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 232

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 23/169 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +          P  P   I T+ ++
Sbjct: 59  ADKPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLS 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176
           RR  P  +    +L K   +++        H AL D ++ + + I +M 
Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMR 152


>gi|206579741|ref|YP_002237768.1| exodeoxyribonuclease X [Klebsiella pneumoniae 342]
 gi|206568799|gb|ACI10575.1| exodeoxyribonuclease X [Klebsiella pneumoniae 342]
          Length = 219

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++D   TN      + P+ R  +P+A+ +H IT+E +
Sbjct: 4   VIDTETCGLQGG---IVEIASVDIVDGRITNPMSH-LVRPD-RPITPQAMAIHRITEEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I   +       +  ++AHNA FD   +          P      I T+ +A
Sbjct: 59  ADKPWIEEIIPYYL-----GSPWYVAHNASFDRRVL----------PEMSGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +     L K   + +        H AL D ++ + + + ++
Sbjct: 104 RRLWPGIKYSNMGLYKSRKLNVATPPGLHHHRALYDCYITAALLLDII 151


>gi|319650832|ref|ZP_08004969.1| hypothetical protein HMPREF1013_01575 [Bacillus sp. 2_A_57_CT2]
 gi|317397430|gb|EFV78131.1| hypothetical protein HMPREF1013_01575 [Bacillus sp. 2_A_57_CT2]
          Length = 220

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 8/185 (4%)

Query: 2   IRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEA 59
                +  IVFD ETTG   S  DRIIEIGAV +  +    +  FQ ++ P  R+ S E 
Sbjct: 21  TPLEDLSFIVFDTETTGFQVSATDRIIEIGAVPVKGFQVQEKDLFQTYVNPK-RQISREI 79

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPL 118
            +L  I+DE +KD P        F+D+   + A   + H   FD   I +E +R     L
Sbjct: 80  RELTSISDELVKDAPQALEAILSFFDYVESREAVCLVGHYVGFDALAIKSEFKREKL-AL 138

Query: 119 DPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                IDTL +     PS    DL      +G  I  R  H A+ D+   + +Y++++  
Sbjct: 139 KNFLTIDTLDLIGFIAPSYDMRDLERYAMAFGTRIYDR--HSAVGDALTTAYLYVELLFQ 196

Query: 178 GSQIN 182
             Q  
Sbjct: 197 FQQRG 201


>gi|167552492|ref|ZP_02346245.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|197251607|ref|YP_002146145.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197215310|gb|ACH52707.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205322894|gb|EDZ10733.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 232

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +          P  P   I T+ ++
Sbjct: 59  ADKPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLS 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   +++        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|300722831|ref|YP_003712123.1| RNase T [Xenorhabdus nematophila ATCC 19061]
 gi|297629340|emb|CBJ89939.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Xenorhabdus nematophila ATCC 19061]
          Length = 211

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +++ D ++EI A+ L      +     T    + P  G    P AL   
Sbjct: 11  PVVIDVETAGFNARTDALLEIAAITLKMDENGWLMPADTLHFHVDPFEGANLDPAALAFT 70

Query: 64  GITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAELQR--I 113
           GI     L+   S  +     +    +         A  +AHNA FD  F+ A  +R  +
Sbjct: 71  GIDPTNPLRGAVSEYTALHAIFKMIRKGMKDTNCNRAIMVAHNASFDHNFVMAAAERSGL 130

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + P  P    DT +++       +  L   C    I       H AL D+   + ++ +
Sbjct: 131 KRIPFHPFATFDTAALSGLVL--GQTILAKACITAEIPFDSDQAHSALYDTDRTALLFCE 188

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 189 LVNRWKRLG 197


>gi|16760829|ref|NP_456446.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16765220|ref|NP_460835.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29141480|ref|NP_804822.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62180453|ref|YP_216870.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|167993853|ref|ZP_02574946.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168233692|ref|ZP_02658750.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168259853|ref|ZP_02681826.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168820696|ref|ZP_02832696.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194469318|ref|ZP_03075302.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197265660|ref|ZP_03165734.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|200390618|ref|ZP_03217229.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|213419003|ref|ZP_03352069.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
 gi|213426806|ref|ZP_03359556.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213648159|ref|ZP_03378212.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|213851907|ref|ZP_03381439.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|224583619|ref|YP_002637417.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|238912063|ref|ZP_04655900.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289829019|ref|ZP_06546715.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25511843|pir||AB0741 exodeoxyribonuclease X (EC 3.1.11.-) [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16420413|gb|AAL20794.1| DNA exonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16503126|emb|CAD05629.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29137107|gb|AAO68671.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62128086|gb|AAX65789.1| DNA exonuclease X, degrades ss and ds DNA with 3'-5' polarity
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194455682|gb|EDX44521.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197243915|gb|EDY26535.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|199603063|gb|EDZ01609.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205328180|gb|EDZ14944.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205332278|gb|EDZ19042.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205342565|gb|EDZ29329.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205351180|gb|EDZ37811.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|224468146|gb|ACN45976.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261247049|emb|CBG24868.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993856|gb|ACY88741.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158399|emb|CBW17906.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912871|dbj|BAJ36845.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320085616|emb|CBY95394.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321224521|gb|EFX49584.1| Exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322714928|gb|EFZ06499.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323130162|gb|ADX17592.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332988772|gb|AEF07755.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 232

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 23/169 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +          P  P   I T+ ++
Sbjct: 59  ADKPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLS 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176
           RR  P  +    +L K   +++        H AL D ++ + + I +M 
Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMR 152


>gi|309811312|ref|ZP_07705099.1| exonuclease [Dermacoccus sp. Ellin185]
 gi|308434619|gb|EFP58464.1| exonuclease [Dermacoccus sp. Ellin185]
          Length = 221

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 9/192 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+GLD    R+IE+   +L       R +   +   G       + +HG++D 
Sbjct: 15  FAVVDVETSGLDPLRHRVIEVAVTQLTPSGGLEREWSSLVRARGGTGP---VHIHGLSDY 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P F+ +  E  +  + +    +AHNA FD  F+ AE +R  ++ L  S  + T  
Sbjct: 72  DVRDAPGFADLVDELSELLDGR--ILVAHNAAFDWAFLAAEARRAGRE-LPVSERLCTWH 128

Query: 129 IAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +AR  + P+    L +L + + I + +   H A  D  +L +V  + +    +       
Sbjct: 129 LARGLELPTDNLRLGTLAEYWSIPVEN--AHRAGDDVRVLVEVLRRCLDEAGRRAAPLPL 186

Query: 188 NEDRFFKEEKKT 199
            E        +T
Sbjct: 187 EECAALPRWWRT 198


>gi|312959243|ref|ZP_07773761.1| ribonuclease T [Pseudomonas fluorescens WH6]
 gi|311286503|gb|EFQ65066.1| ribonuclease T [Pseudomonas fluorescens WH6]
          Length = 225

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +   D ++EI A    ++   +     T    + P  G      AL+  
Sbjct: 32  PVVIDVETGGFNCATDALLEIAATTIGMDEQGFVYPEHTHFFRVEPFEGANIEAAALEFT 91

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI  D  L+   S  +  ++              + A  + HN+ FD+GF+NA + R  +
Sbjct: 92  GIKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDM 151

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  
Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209

Query: 174 MMVGGSQIN 182
           ++    Q+ 
Sbjct: 210 IVNRWKQMG 218


>gi|212715911|ref|ZP_03324039.1| hypothetical protein BIFCAT_00820 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661278|gb|EEB21853.1| hypothetical protein BIFCAT_00820 [Bifidobacterium catenulatum DSM
           16992]
          Length = 196

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 9/170 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            IV D ETTGL   K  R+IEIGAV++ +    +  F   + P           L GI D
Sbjct: 22  FIVIDTETTGLSVRKGARLIEIGAVKIHNDELVDE-FDQLINPFEH-IPSRITGLTGIDD 79

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA--ELQRINKDPLDPSRIID 125
             L  KP    +  EF  + ++  A  +AHNA FD+ F++   +L   ++D       +D
Sbjct: 80  GMLLGKPDVREVMDEFARWCSDT-AVVMAHNASFDMSFLDNAVQLAYADRDARFAHHFVD 138

Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           TL ++RR HP  R + +++L   Y I  +   +H AL D+     +Y  M
Sbjct: 139 TLDLSRRLHPEKRTHKVSTLIVDYHI--ADMEEHRALSDAKQEWMLYRAM 186


>gi|326568596|gb|EGE18667.1| ribonuclease T [Moraxella catarrhalis BC7]
          Length = 232

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 82/221 (37%), Gaps = 24/221 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++  D ++EI  V    +              + P +G    P
Sbjct: 15  RFRGFLPVVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEP 74

Query: 58  EALKLHGIT-DEFLKDKPSFSS--IFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
            ALK  GI  D   +   S          +            +    + HNA FD+GF+N
Sbjct: 75  AALKFTGINPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLN 134

Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A + R N     P     ++DT+S A   +      L   C   GI   ++  H AL D+
Sbjct: 135 AAIARTNSKNHSPFHTFSVLDTVSFAALTY--GHTVLAKTCMIAGIEFDNQHAHSALYDA 192

Query: 165 HLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL 205
              ++++  ++      N    TN     + +  T P+ + 
Sbjct: 193 QKTAELFCHIVNQ----NTLLSTNHANLTQNDTPTSPHQTP 229


>gi|104773929|ref|YP_618909.1| hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423010|emb|CAI97696.1| Hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 290

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 13/169 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIETTGL+++ D+I+ IGAV+          F   +         + ++L GIT E
Sbjct: 126 FVAVDIETTGLNTETDQILSIGAVKHD-----GTEFYRLIK-QDIDVPKQIVELTGITSE 179

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L K+         E  DF    N   + +N +FD  F+N + ++     L  + I D L
Sbjct: 180 MLSKEGVPLQDALEELTDFVG--NVPIVGYNFRFDSAFLNRDYRKCGMQEL-KNEIKDLL 236

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            + +RK        L ++   YGI   ++  H A+ D+    ++ +K++
Sbjct: 237 PVVKRKEKFLDNYKLQTVLSNYGIE--NKVPHNAVSDARATKELAMKLI 283


>gi|73662206|ref|YP_300987.1| exonuclease [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72494721|dbj|BAE18042.1| putative exonuclease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 184

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D ET   + K   I  +G V+++++  T  +F   + PN    S + + +H I  E
Sbjct: 6   FIALDFETA--NGKRTSICAVGMVKVVNHQIT-ESFYTLVNPNDY-FSQQNIAVHSIHPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P+F +++     F    +   +AHNA FD+  ++  +     D         +L 
Sbjct: 62  QVEDAPTFQTVYPYMLQFIG--DLPVVAHNAAFDMNVLHESISAFGFDT-PNMTYFCSLQ 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++RR   + R  LN + + Y +       H AL D+   + +  +++
Sbjct: 119 LSRRTVENHRYGLNYMMQYYNLDF--HGHHDALNDAKACAMITFRLL 163


>gi|323699453|ref|ZP_08111365.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio sp.
           ND132]
 gi|323459385|gb|EGB15250.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
           desulfuricans ND132]
          Length = 178

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 8/170 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   + +R +  D ET   D K D    +G V ++D  +        + P   + +P  +
Sbjct: 1   MPTLDDVRFVAIDFETA--DPKRDSACALGIV-VVDRGEIVARDYRLIRPPRARFNPFCV 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGI  E + ++PSF  ++ E    F   +   +AHNA FD   ++   +         
Sbjct: 58  RVHGIHWEDVCNEPSFGDLWPELEVHFRGAD-FLVAHNAAFDKSVLHTCCKESGW-TAPE 115

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              + T+ +AR+    S N L ++C+  GI ++H   H A  D+   + +
Sbjct: 116 QPFLCTVQLARKTWELSCNKLPNVCEYLGIELNH---HNAASDAEACALI 162


>gi|225352024|ref|ZP_03743047.1| hypothetical protein BIFPSEUDO_03631 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157271|gb|EEG70610.1| hypothetical protein BIFPSEUDO_03631 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 196

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 9/170 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            IV D ETTGL   K  ++IEIGAV++ +    +  F   + P           L GI D
Sbjct: 22  YIVIDTETTGLSVRKGAKLIEIGAVKIRNDELVDE-FDQLINPFEH-VPSRITGLTGIDD 79

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIID 125
             L  KP    +  EF  + ++  A  +AHNA FD+ F++  +Q     +D       +D
Sbjct: 80  GMLLGKPDVREVMDEFARWCSDT-AVVMAHNASFDMSFLDNAVQLAYSERDARFAHHFVD 138

Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           TL ++RR HP  R + +++L   Y I  +   +H AL D+     +Y  M
Sbjct: 139 TLDLSRRLHPEKRSHKVSTLIVDYHI--ADMEEHRALSDARQEWMLYRAM 186


>gi|21673865|ref|NP_661930.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS]
 gi|21647000|gb|AAM72272.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS]
          Length = 232

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 18/193 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL 60
              +++R ++FD ET+G D   DRI+ IGAV +   +     +F+V L         +A+
Sbjct: 38  TPLDELRFVIFDTETSGFDLVKDRILSIGAVSMKGSTIDIADSFEVLLRQE-AIGGKDAV 96

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLD 119
            +HGI    L            F D+    N   +AH+A FD+  +N  L QR     L 
Sbjct: 97  SVHGILKRDLTQGMEEGEAVCRFLDYLG--NGVIVAHHADFDIAMVNRVLSQRYGIKLL- 153

Query: 120 PSRIIDTLSIARRK---------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            +  +DT S A+R          H S    L++LC RYGI +  R  H +  D++L + +
Sbjct: 154 -NEALDTASFAKRLEKGPYYNLAHKSGEYRLDNLCARYGICLYDR--HTSAGDAYLTAQL 210

Query: 171 YIKMMVGGSQINF 183
           + +++  G +   
Sbjct: 211 FQRLLAVGRKAGI 223


>gi|282880819|ref|ZP_06289515.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305353|gb|EFA97417.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 183

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +  I  D ET TG   K   + E G   + D  K   T    + P     S   +++HGI
Sbjct: 4   LNFIAIDFETATG---KRASVCEAGICVVKDG-KIVETKSWLIRPEDNAYSYWNIQIHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E  ++ PSF  ++ E   +  E     +AHNA FD+  I   L+  + D LD      
Sbjct: 60  HPEDTENAPSFPCVWQEILTYLKETP-ILVAHNAAFDISCIRKSLELYHLDTLDVD-YYC 117

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           TL  AR  +    + L  LC+++ I     + H A  D+ + + ++++
Sbjct: 118 TLRAARHHYDFECHTLGYLCEQFEIP--EGTHHRAGDDAEMCARLFLR 163


>gi|78777804|ref|YP_394119.1| DNA polymerase III subunit epsilon [Sulfurimonas denitrificans DSM
           1251]
 gi|78498344|gb|ABB44884.1| Exonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 266

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 12/192 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIET G   +  +IIEI A+++ +     R F+  +     + +P   ++ GI+  
Sbjct: 71  FCIVDIETNGSKIEKHQIIEIAALKVKNGLVVER-FESLV--ECHEINPHITEITGISTN 127

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              D P+   +  +F  F    +A +IAH+ KFD  FI+  +Q+I   PL  +R + +LS
Sbjct: 128 ETIDAPNLKKVMYDFRTFLG--DAVFIAHDVKFDYKFISLSMQKIGLPPLL-NRSLCSLS 184

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +A R   S R  L+ L   + +     + H A+ D     +++    +  + ++   KT 
Sbjct: 185 LAERTIESYRYALSYLNTIFNLHPEA-THHRAMSDVITTYELFK---LSLNSVDKEVKTV 240

Query: 189 ED--RFFKEEKK 198
           ED  RF KE K+
Sbjct: 241 EDLIRFSKEAKR 252


>gi|146281584|ref|YP_001171737.1| ribonuclease T [Pseudomonas stutzeri A1501]
 gi|145569789|gb|ABP78895.1| ribonuclease T [Pseudomonas stutzeri A1501]
          Length = 203

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+E  G +   D ++EI AV +    +       T    + P  G    P
Sbjct: 4   RFRGFLPVVIDVECGGFNCATDALLEIAAVTIGMDEQGLLYPQDTLFYRVEPFAGANIEP 63

Query: 58  EALKLHGI-TDEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109
            AL+  GI  D  L+         ++ +            + A  + HN+ FD+GF+NA 
Sbjct: 64  AALEFTGIKLDHPLRMAVPEQQALTDIFRSVRKAVKSAGCKRAILVGHNSSFDLGFLNAA 123

Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           + R    ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   
Sbjct: 124 IARCEIKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKT 181

Query: 168 SDVYIKMMVGGSQIN 182
           ++++  ++    ++ 
Sbjct: 182 AELFCGIVNRWKEMG 196


>gi|148925831|ref|ZP_01809518.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844817|gb|EDK21921.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 256

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 7/147 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIE+TG       I+EIGAV++ +  +  R FQ F+    ++      +L GIT E
Sbjct: 72  FCIVDIESTG-SVSKGEILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYE 127

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ PS + + S+F  F   +++ ++AHN +FD  FI+  L       L  +R I T+ 
Sbjct: 128 MVENAPSLTKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILL-NRRICTIE 184

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155
            A+    S +  L  L +  G+  +H 
Sbjct: 185 FAQCCIESPKYKLEVLKEFLGVENTHH 211


>gi|300087648|ref|YP_003758170.1| DNA polymerase III subunit epsilon [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527381|gb|ADJ25849.1| DNA polymerase III, epsilon subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 260

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 13/181 (7%)

Query: 1   MIRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M      R  + FD+ETTGL+   DRI+EI  V+LL    T  +    + P G      A
Sbjct: 1   MNNLKLDRPLVFFDLETTGLNPLKDRIVEITLVKLLPDG-TEESRSRLIDP-GIPIPETA 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGITD+ +  +PSF+ I   F DF   +  +    N  KFD+  + AE +R   D  
Sbjct: 59  TAIHGITDDRVAGQPSFNRIAKSFRDFL--EGCDLCGFNIKKFDIPMLEAEFRRAGVDFS 116

Query: 119 DPSRI-IDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMV 176
              R  IDT  I  + HP     L +    Y G  +++   H +  D+   +++    + 
Sbjct: 117 RAGRRIIDTQVIFHKFHPRG---LEAAYSLYCGKQLAN--LHSSDADARACAEILSAQLA 171

Query: 177 G 177
            
Sbjct: 172 A 172


>gi|205352416|ref|YP_002226217.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207856601|ref|YP_002243252.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|205272197|emb|CAR37055.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206708404|emb|CAR32708.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326627468|gb|EGE33811.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 232

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 23/169 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +          P  P   I T+ ++
Sbjct: 59  ADKPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLS 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176
           RR  P  +    SL K   +++        H AL D ++ + + I +M 
Sbjct: 104 RRLWPGIKYSNMSLYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMR 152


>gi|146328835|ref|YP_001209227.1| ribonuclease T [Dichelobacter nodosus VCS1703A]
 gi|146232305|gb|ABQ13283.1| ribonuclease T [Dichelobacter nodosus VCS1703A]
          Length = 206

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 19/189 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G D + D ++E+ AV              TF   + P  G   +P
Sbjct: 8   RFRGFLPVVVDVETGGFDHEKDALLEVAAVLVNFNEAGNLAPVETFHYHVKPFEGAHLNP 67

Query: 58  EALKLHGITDEFLKDKPSFSSI------FSEFWDFFNEQNA---EWIAHNAKFDVGFINA 108
           ++LK++GI D F   +P+   +      F    ++   Q+      + HNA FD+GFINA
Sbjct: 68  DSLKINGI-DPFHPLRPALDEVTVAKQLFGAIREYQKAQSCTRSILVGHNAHFDLGFINA 126

Query: 109 ELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
              R N   +P  P   +DT+S+    +   +  L  + K  G        HGA  D+ L
Sbjct: 127 LAARCNYQHNPFHPFSSLDTVSLGALAY--GQTVLARIAKAAGFEYDSERAHGAKYDTEL 184

Query: 167 LSDVYIKMM 175
            + ++  ++
Sbjct: 185 TAQIFCHII 193


>gi|301026596|ref|ZP_07190019.1| exonuclease [Escherichia coli MS 69-1]
 gi|300395429|gb|EFJ78967.1| exonuclease [Escherichia coli MS 69-1]
          Length = 220

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I++I +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVDIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +      ++  +   ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|168238504|ref|ZP_02663562.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194735808|ref|YP_002114913.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204930999|ref|ZP_03221825.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194711310|gb|ACF90531.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288686|gb|EDY28061.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204320043|gb|EDZ05248.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322616877|gb|EFY13785.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618116|gb|EFY15008.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625787|gb|EFY22606.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626239|gb|EFY23049.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632652|gb|EFY29397.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638997|gb|EFY35690.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640437|gb|EFY37090.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644201|gb|EFY40746.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649525|gb|EFY45957.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655432|gb|EFY51740.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660811|gb|EFY57042.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662892|gb|EFY59099.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668077|gb|EFY64236.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674164|gb|EFY70258.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675483|gb|EFY71557.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683103|gb|EFY79119.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686797|gb|EFY82775.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195312|gb|EFZ80492.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323199204|gb|EFZ84299.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202983|gb|EFZ88016.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207461|gb|EFZ92409.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213958|gb|EFZ98726.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217444|gb|EGA02163.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323219962|gb|EGA04435.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323231467|gb|EGA15580.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235907|gb|EGA19986.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240478|gb|EGA24521.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245369|gb|EGA29369.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323246734|gb|EGA30706.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323253590|gb|EGA37418.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255358|gb|EGA39128.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323260250|gb|EGA43871.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266842|gb|EGA50328.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323269048|gb|EGA52504.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 232

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 23/169 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +          P  P   I T+ ++
Sbjct: 59  ADKPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLS 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176
           RR  P  +    +L K   +++        H AL D ++ + + I +M 
Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMR 152


>gi|325297417|ref|YP_004257334.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
 gi|324316970|gb|ADY34861.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
          Length = 183

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 7/172 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D ET     K   I E G   + +  K   T    + P G   S   +++HGI   
Sbjct: 6   FIAIDFETA--TRKRASICEAGICVVRNG-KVAETRSWLIRPEGNYYSYWNMQIHGIRPS 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             ++ P F  I+++  ++  E     +AHNA FD+G I   LQ  +    D      +L 
Sbjct: 63  DTENAPEFPEIWTKITEYLGECP-VLVAHNAIFDIGCIRHSLQFYHIKKPDI-TYYCSLR 120

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            AR+ +    N L+ LC ++ I    R  H A  D+ + + ++++ +   ++
Sbjct: 121 AARKLYNFDCNKLDYLCDQFEIPY--RLHHRAGDDAEMCARLFLREIRDAAK 170


>gi|323467153|gb|ADX70840.1| DNA polymerase III [Lactobacillus helveticus H10]
          Length = 317

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 6/164 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTGL    DRI E+G V++ +    ++   +   P   K      KL+GIT+E
Sbjct: 33  YTMLDIETTGLSPFRDRITELGGVKVRNGQIVDQYTNLVKFPKNNKVPAFITKLNGITEE 92

Query: 69  FLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L  +         EF +F  +     I +N  FD+ F+    Q+ N  P+  +  +D L
Sbjct: 93  QLTNEGIPAEQAIKEFREFIGDD--TIIGYNVNFDLNFLYDLSQKYNL-PVLNNDYVDVL 149

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +A+  +P   N L    +R GI  +   +H  L DS     VY
Sbjct: 150 RLAKVYYPRQHNRLIDCMQRAGI--AQVEQHHGLADSLDTIKVY 191


>gi|322385196|ref|ZP_08058843.1| DNA polymerase III [Streptococcus cristatus ATCC 51100]
 gi|321270820|gb|EFX53733.1| DNA polymerase III [Streptococcus cristatus ATCC 51100]
          Length = 814

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M + N  +  V D+E T   + ++  I    + +++     +T++  + P+         
Sbjct: 1   MAQSN-YKYAVIDLEAT--SASSNAKIIQIGIVIIENGVICQTYETDVNPH-EDLDEHIK 56

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L G+ D+ L+  P FS +  E ++    ++A ++AHN KFD   +   L     D L P
Sbjct: 57  QLTGLDDQRLRQAPDFSQVAREVYELI--EDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              +DT+ +A+  +P+  +  L +LC+   I + +   H AL D+   + +++K+    +
Sbjct: 115 --RVDTVELAQVFYPTFDKYALGNLCELLEIPLEN--AHTALADAQATAQLFLKIQKKMA 170

Query: 180 QINFGF 185
           ++    
Sbjct: 171 RLPKAL 176


>gi|257454452|ref|ZP_05619714.1| ribonuclease T [Enhydrobacter aerosaccus SK60]
 gi|257448218|gb|EEV23199.1| ribonuclease T [Enhydrobacter aerosaccus SK60]
          Length = 242

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 86/234 (36%), Gaps = 25/234 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NG 52
           M   N+ R    +V D+ET G + K D ++EI  + +L                + P  G
Sbjct: 8   MTIANRFRNYLPVVVDVETAGFNPKTDALLEIACIPILMDDTGLFYPGEAVNAHIEPFEG 67

Query: 53  RKNSPEALKLHGITDE--FLKD-KPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFD 102
                 AL+  GI       K       +     + +               + HNA FD
Sbjct: 68  ANLEARALQFTGINPHSPMRKAIAEDEKTAIRRIFKYLKTVRQSTQCTKCILVGHNAHFD 127

Query: 103 VGFINAELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
           + F+NA ++R N   +       ++DT++++       +  L   CK  G+       H 
Sbjct: 128 LSFLNALIERTNSKNQSQFHQFSVLDTVTLSALAF--GQTVLARACKLAGLEFDGNEAHS 185

Query: 160 ALLDSHLLSDVYIKMMVGGSQI--NFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
           AL D+   ++++  ++     +  N      +D  + E + +     L+  D P
Sbjct: 186 ALYDTQKTAELFCYILNNYPMLTPNLASDEAKDEEYDEPQDSDDEAILVPSDDP 239


>gi|217032955|ref|ZP_03438429.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128]
 gi|216945324|gb|EEC23998.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128]
          Length = 287

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 8/161 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 75  FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 132 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +R   S R  L+ L +  G  I     H A  D+     ++
Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLF 227


>gi|262041960|ref|ZP_06015142.1| exodeoxyribonuclease 10 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040658|gb|EEW41747.1| exodeoxyribonuclease 10 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 219

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++D   TN      + P+ R  SP+A+ +H IT+E +
Sbjct: 4   VIDTETCGLQGG---IVEIASVDIVDGQITNPMSH-LVRPD-RPISPQAMAIHRITEEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I   +       +  ++AHNA FD   +          P      I T+ +A
Sbjct: 59  ADKPWIEEIIPHYH-----GSRWYVAHNASFDRRVL----------PEMHGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +     L K   + +        H AL D ++ + + + ++
Sbjct: 104 RRLWPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYITAALLLDII 151


>gi|27468497|ref|NP_765134.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus
           epidermidis ATCC 12228]
 gi|57867358|ref|YP_189001.1| exonuclease [Staphylococcus epidermidis RP62A]
 gi|251809901|ref|ZP_04824374.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282874556|ref|ZP_06283441.1| exonuclease [Staphylococcus epidermidis SK135]
 gi|293367792|ref|ZP_06614441.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27316044|gb|AAO05178.1|AE016749_124 DNA polymerase III, alpha chain PolC-type [Staphylococcus
           epidermidis ATCC 12228]
 gi|57638016|gb|AAW54804.1| exonuclease [Staphylococcus epidermidis RP62A]
 gi|251806566|gb|EES59223.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281296695|gb|EFA89204.1| exonuclease [Staphylococcus epidermidis SK135]
 gi|291318131|gb|EFE58528.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726906|gb|EGG63364.1| exonuclease [Staphylococcus epidermidis VCU144]
 gi|329734711|gb|EGG71017.1| exonuclease [Staphylococcus epidermidis VCU045]
 gi|329734804|gb|EGG71109.1| exonuclease [Staphylococcus epidermidis VCU028]
          Length = 184

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +SK   I  +G V+++D   T  +F   + P           +HGI  E
Sbjct: 6   FVALDFETA--NSKRTSICSVGMVKVIDNQIT-ESFHTLVNPFDYFTETNIT-VHGIHPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P F  ++     F ++     +AHNA FD+  ++  L+  N D         +  
Sbjct: 62  DVQDAPGFKHVYPYMLKFIDQ--LPVVAHNAAFDMNVLHQSLKSHNIDT-PSLTYFCSYQ 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+R   + R  L  L   Y +       H AL D+   + +  +++
Sbjct: 119 LAKRTINAYRYGLKHLMNHYHLDF--HGHHDALNDAKACAMITYRLL 163


>gi|161613571|ref|YP_001587536.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|198244129|ref|YP_002215209.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|161362935|gb|ABX66703.1| hypothetical protein SPAB_01291 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197938645|gb|ACH75978.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326622957|gb|EGE29302.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 232

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 23/169 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +          P  P   I T+ ++
Sbjct: 59  ADKPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLS 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176
           RR  P  +    +L K   +++        H AL D ++ + + I +M 
Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHYHRALYDCYITAALLIDIMR 152


>gi|317048499|ref|YP_004116147.1| exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
 gi|316950116|gb|ADU69591.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
          Length = 222

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 28/241 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V+++D    N      +CP+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGLQGG---VVEVASVDVIDGQILN-PMSDLICPD-RPISHQAMAVHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP+       +       +  ++AHNA FD   +          P  P + I T+++A
Sbjct: 59  ADKPTIEQAIGRYH-----GSPHYVAHNASFDRRML----------PEMPGQWICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITIS---HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           R+  P  +    +L     + ++       H AL D ++ + + I++M   S  N     
Sbjct: 104 RQLWPGQKYGNQALRHSLKLDVTPPADLHAHRALYDCYVTAALLIRIMEK-SGWNAEQMV 162

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG---KNAIWDRYISSN 244
           +  +         P      +      R     L    + ++ L    + A+  +Y+ S+
Sbjct: 163 SRCQPAPVADDVFPFGKYRGQSIGSIARKDPGYLRWVLENVRDLRPPLRQAL-RKYVKSD 221

Query: 245 Q 245
           Q
Sbjct: 222 Q 222


>gi|254516595|ref|ZP_05128654.1| ribonuclease T [gamma proteobacterium NOR5-3]
 gi|219675018|gb|EED31385.1| ribonuclease T [gamma proteobacterium NOR5-3]
          Length = 209

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 20/200 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLD--YSKTNRTFQVFLCP-NG 52
           M  K++ R    ++ D+ET G  S  D I+E+ A  + + D  +   + T    + P  G
Sbjct: 1   MAMKSRFRGFLPVIIDMETGGFSSSTDAILELAATIIRMDDSGHVAVHETHSFNVAPFEG 60

Query: 53  RKNSPEALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVG 104
                 AL   GI       E   +K + + +F        +Q    A  + HNA FD G
Sbjct: 61  ANIEQSALDFTGIDPWHPFREAHSEKDALAELFQVVRREIRDQECNRAILVGHNAHFDAG 120

Query: 105 FINAELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           F+NA ++R    ++P  P    DT +++   +   +  L   C   GI   +   H A  
Sbjct: 121 FLNAAVERCEIKRNPFHPFSHFDTATLSGLAY--GQTVLAKSCLEAGIPFDNEQAHSAAY 178

Query: 163 DSHLLSDVYIKMMVGGSQIN 182
           D+   ++++  ++     + 
Sbjct: 179 DAERTAELFCSIVNRWQMLG 198


>gi|303235494|ref|ZP_07322106.1| exonuclease [Prevotella disiens FB035-09AN]
 gi|302484293|gb|EFL47276.1| exonuclease [Prevotella disiens FB035-09AN]
          Length = 183

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 12/194 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + +  I  D ET    +    I E G + ++   K   T    + P G   +    ++H
Sbjct: 1   MHDINFIAIDFETA--SNAQAAICEAG-ISIVKGGKVVETRSWLVRPEGNAYNYWNTRVH 57

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT +     P F  +++E   +  +     +AHNA FD+G I   L             
Sbjct: 58  GITAKDTAHAPEFPQVWNEIMTYLADCP-ILVAHNAGFDMGCIRRSLAFYGLKT-PEITY 115

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             +L  AR+ +    N L  LC+++ I       H A  D+ + + ++++ +      +F
Sbjct: 116 YCSLRAARKIYDFECNKLEFLCQKFEIPY--GQHHRAGDDAAMCAHLFLRELK-----DF 168

Query: 184 GFKTNEDRFFKEEK 197
           G+    +  F E K
Sbjct: 169 GWADLSEMHFCEGK 182


>gi|288554371|ref|YP_003426306.1| hypothetical protein BpOF4_06780 [Bacillus pseudofirmus OF4]
 gi|288545531|gb|ADC49414.1| hypothetical protein BpOF4_06780 [Bacillus pseudofirmus OF4]
          Length = 220

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 7/178 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
                +   +FD ETTG      DR+IEI  V +       +TFQ F+ P+ R+   +  
Sbjct: 21  THIRDLTFTIFDTETTGFAINGADRMIEIAGVRVAGLEVQEQTFQTFVNPD-REIPEKIT 79

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLD 119
            L GI+ E +KD PS       F+ F  + +++  + H   FD+  +  EL R       
Sbjct: 80  SLTGISGEKVKDAPSSLEALERFFQFNEDIDSKLWVGHYVSFDMMVVKKELLRHKYTYDT 139

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P  ++DTL +    +PS    DL     ++G  +  R  H AL D+   + ++ ++M 
Sbjct: 140 P-LVVDTLDLIGYLNPSRDMRDLEVYALQFGTLVYER--HQALGDAMTTAHLFCELMR 194


>gi|228473352|ref|ZP_04058106.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
 gi|228275254|gb|EEK14052.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
          Length = 164

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +     +  IG V + +    + T+   + P     SP   ++HG++  
Sbjct: 4   FVALDFETA--NQYRSSVCSIGLVFVENNEIVD-TYYQLIKPAPNYYSPFCTQVHGLSQY 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +  P F  ++ E       ++   +AHN+ FD G +   L      P   +    TL 
Sbjct: 61  DTEKAPLFPEVWKEILPKI--KDLPLVAHNSMFDEGCLREVLA-YYALPQHTNPFFCTLR 117

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            AR+  P    + L+++   +G  +  +  H AL D+   + + +++
Sbjct: 118 AARKSLPQLVNHKLDTVSAYFGFDL--KQHHHALADAEACAHIALEL 162


>gi|295693033|ref|YP_003601643.1| ATP-dependent DNA helicase ding [Lactobacillus crispatus ST1]
 gi|295031139|emb|CBL50618.1| ATP-dependent DNA helicase DinG [Lactobacillus crispatus ST1]
          Length = 926

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 9/171 (5%)

Query: 6   KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K    V D+ETTG   +N   II+ G   ++   K  +T+   + P+ R+     + L G
Sbjct: 7   KDTFAVVDLETTGTQRENGHHIIQFGC-AIIKNLKVVKTYSFLINPH-REIPQSVVNLTG 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I D+ +  +  F     +       QN  ++AHN  FD+ F+N EL +   + L  ++ I
Sbjct: 65  IHDQDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAI 121

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           DT+ +A+   P+     L+ L  + GI   H   H A  D++  + + +++
Sbjct: 122 DTVELAKIAFPTFPSYKLSDLTTQLGIK--HLDPHKADSDAYGTAVLLLEI 170


>gi|78777649|ref|YP_393964.1| DNA polymerase III subunit epsilon [Sulfurimonas denitrificans DSM
           1251]
 gi|78498189|gb|ABB44729.1| Exonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 205

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 9/172 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGL+ K D I+ IGAV++ D    T++TF+VFL  N ++ S  ++K+HGI  
Sbjct: 34  YVVFDTETTGLNPKVDEILSIGAVKIKDNRVLTSQTFEVFL-QNSKEISSNSIKIHGIRP 92

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             LKD  +      EF +F   +    I +  +FDV  IN   + +    L P+++I+  
Sbjct: 93  FDLKDAKTTKEGIVEFLNFIGSR--PLIGYYLEFDVAMINRYTKPLLGINL-PNKMIEVS 149

Query: 128 SIARR----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            I         P    DL         +I +   H A+ D+ + + +Y+K+ 
Sbjct: 150 EIYFDKTISLIPQGNIDLRFDTILKNCSIPNMGAHNAVNDAIMTAMIYLKLT 201


>gi|298528189|ref|ZP_07015593.1| DNA polymerase III, epsilon subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511841|gb|EFI35743.1| DNA polymerase III, epsilon subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 249

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 16/183 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N+   +V D E TGL+ K D I+ IGA+ + +          F     R    +++ +H
Sbjct: 47  LNEYDFVVLDTELTGLNVKKDEIVTIGALRISEMRIDMEQSFYFCACPTRDVPKQSIVIH 106

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT    +  P          DF    N+  + HN   D+  IN EL++     L  +  
Sbjct: 107 GITPSEAQKAPPLKEALQGLLDFCG--NSIIVGHNINLDISVINRELKKEFGGELH-NPC 163

Query: 124 IDTLSIARRK-----------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           IDT+ +AR+            +     +L  L + +G+ +   ++H A  D+   + ++I
Sbjct: 164 IDTMRLARQYREGQWTGAYECYEEYSYNLRKLSREFGLPL--FTEHNAFTDALQTAYLFI 221

Query: 173 KMM 175
            ++
Sbjct: 222 YLV 224


>gi|317133746|ref|YP_004089657.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
 gi|315450208|gb|ADU23771.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
          Length = 284

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCPNGRKNS 56
           M R   +   V D+ETTG  +K+  + +   ++ +       K   +  VF+ P     +
Sbjct: 17  MARA-GIPICVIDLETTGRSAKDSYVFQFAGLKCIIDKSLTPKIIESLCVFIKPE-VPLN 74

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
               ++ G T+E LKDK    ++F     F +  N    +HN  F+  F+NA   R N  
Sbjct: 75  ERITEITGFTNEDLKDKADEETVFPRIKKFMD--NCIMCSHNTAFEESFMNAMYAR-NGC 131

Query: 117 PLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              P+ IIDTL ++R  H   + + L  + +RYGI       H A  D+ +   +  + +
Sbjct: 132 VFKPAEIIDTLKMSRDLHKEEKSHKLGVIAERYGIA-DGVKFHDARDDTIICGRLLSRFL 190


>gi|227894158|ref|ZP_04011963.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047]
 gi|227864030|gb|EEJ71451.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047]
          Length = 318

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 7/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTGL    DRI E+GAV++ +    ++   +   P   K      KL+GIT+E
Sbjct: 33  YTMLDIETTGLSPYRDRITELGAVKVRNNQIVDQYTNLVKFPKNNKVPAFITKLNGITEE 92

Query: 69  F-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + +         EF +F  +     I +N  FD+ F+    Q+ N  P+  +  +D L
Sbjct: 93  QIVNEGIPAEQAIKEFREFIGDD--PIIGYNVNFDLNFLYDLSQKYNL-PVLNNDYVDVL 149

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +AR  +P  R++ L    +R GI  +   +H  L DS     VY
Sbjct: 150 RLARAYYPRERHNRLIDCMQRAGI--AQVEQHHGLADSLDTIKVY 192


>gi|121997525|ref|YP_001002312.1| ribonuclease T [Halorhodospira halophila SL1]
 gi|121588930|gb|ABM61510.1| RNAse T [Halorhodospira halophila SL1]
          Length = 226

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 18/190 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF----QV-FLCP-NGRKN 55
            R      +V D+ET GL ++ D +++I AV L     T R +        + P  G + 
Sbjct: 26  TRFRAFLPVVVDVETGGLQAETDALLQIAAVILRAEEGTGRLYPAETHTCHVQPFEGARI 85

Query: 56  SPEALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFIN 107
            P+AL+L+GI  E  L+          + ++   ++        A  + HNA FD+ F+N
Sbjct: 86  DPKALELNGIDPEHPLRMAVPERDALGKMFNPVRQELRNTGCNRAVLVGHNAFFDLAFLN 145

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A + R    ++P  P    DT ++    +   +  L    K  GI    +  H A+ D+ 
Sbjct: 146 AAVTRTGFKRNPFHPFSSFDTATLGGLAY--GQTVLAKAVKAAGIEWDAKEAHSAIYDAE 203

Query: 166 LLSDVYIKMM 175
             ++++  ++
Sbjct: 204 KTAELFCAIV 213


>gi|170718052|ref|YP_001785090.1| ribonuclease T [Haemophilus somnus 2336]
 gi|168826181|gb|ACA31552.1| ribonuclease T [Haemophilus somnus 2336]
          Length = 218

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 20/199 (10%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGR 53
           + KN+ R    ++ D+ET G +++ D ++E+ A+ L          +      + P  G 
Sbjct: 13  LLKNRFRGFFPVIIDVETAGFNAQTDALLELAALTLKMDENGLLVPDEKCHFHIQPFEGA 72

Query: 54  KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105
             +PE+LK +GI  D  L+   S +   SE +          + Q +  +AHNA FD  F
Sbjct: 73  NINPESLKFNGIDIDNPLRGAISENVAMSELFKMVRHGQKKADCQRSVIVAHNATFDQSF 132

Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A  +R  I ++P  P  I DT +++       +  L   C+   I+   +  H AL D
Sbjct: 133 VMAAAERTKIKRNPFHPFSIFDTATLSGFMF--GQTVLVKGCQVANISFDGKKAHSALYD 190

Query: 164 SHLLSDVYIKMMVGGSQIN 182
           +   ++++  M+    ++ 
Sbjct: 191 AERTAELFCYMVNHLKKLG 209


>gi|282878677|ref|ZP_06287446.1| exonuclease [Prevotella buccalis ATCC 35310]
 gi|281299222|gb|EFA91622.1| exonuclease [Prevotella buccalis ATCC 35310]
          Length = 284

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 9/175 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    K   IVFD+ETTGLD   DRII+I  +++    K  R   + + P  +    E  
Sbjct: 1   MKLNLKKPIIVFDLETTGLDLVKDRIIQISYIKVFPDGKEERE-NILVNPE-KNIPLEVS 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLD 119
            L GIT+E + D P F  I  +  + F  +  ++  +N   FD+  +  E  R   D   
Sbjct: 59  ALTGITNEDVADAPKFQDIAQKLAEEF--KGCDFAGYNSNHFDIPILAEEFLRAGIDFDF 116

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYI 172
               +  +      H   R +L +  K Y G  +      H A  D+ +   V +
Sbjct: 117 SKSNL--VDAQAIFHKMERRNLAAAYKFYCGRKMEDDFEAHRADQDAEVTYRVLM 169


>gi|242241732|ref|ZP_04796177.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144]
 gi|242234822|gb|EES37133.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144]
          Length = 184

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V+++D   T  +F   + P     +   + +HGI  E
Sbjct: 6   FVALDFETA--NGKRTSICSVGMVKVIDNQIT-ESFHTLVNPFDY-FTETNINVHGIHPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P F  ++     F ++     +AHNA FD+  ++  L+ +N D         +  
Sbjct: 62  DVQDAPGFKHVYPYMLQFIDQ--LPVVAHNAAFDMNVLHQSLKSLNIDT-PSLTYFCSYQ 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+R   + R  L  L   Y +       H AL D+   + +  +++
Sbjct: 119 LAKRTINAYRYGLKHLMNHYHLDF--HGHHDALNDAKACAMITYRLL 163


>gi|326789827|ref|YP_004307648.1| exonuclease RNase T and DNA polymerase III [Clostridium lentocellum
           DSM 5427]
 gi|326540591|gb|ADZ82450.1| Exonuclease RNase T and DNA polymerase III [Clostridium lentocellum
           DSM 5427]
          Length = 305

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 77/178 (43%), Gaps = 11/178 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +V D ET   +S       +G V++ + +  + +F   + P           L GIT
Sbjct: 1   MNYVVIDFETA--NSSRSSACSLGMVKVHEGNIVD-SFYSLINPED-DFDLFNTSLTGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + + P+F+ ++ +   F ++     +AH A FD+  +   L + N  P+       T
Sbjct: 57  QDMVCNSPTFNELWPDILSFISDHM--IVAHYASFDLSVLRNVLLKYNI-PIPTLSYCCT 113

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            +++++  P+     L+++     I  +H   H A  D+H  + +   + +  +  +F
Sbjct: 114 RNLSKKTFPNLINYRLDTVASYLDIEFNH---HHAFEDAHATAVLLNHIFIQNTTSSF 168


>gi|332291593|ref|YP_004430202.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169679|gb|AEE18934.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 232

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 15/181 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALK 61
           + +  R +VFD ETTGL  K DRI+ IGAV +++      ++ +++L  +  K  PE+ K
Sbjct: 41  KLHTTRFVVFDTETTGLHYKEDRILSIGAVTVINNEISIAQSLELYLKQDIYK--PESAK 98

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI      ++ +      +  +F        I H+  FDV  IN+ L+R     L  +
Sbjct: 99  IHGILRNGSYEQVNEQEAIEKCLEFIGTD--ILIGHHIGFDVAVINSALKRAQLGKL-KN 155

Query: 122 RIIDTLSIARRK-HP------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           R++DT ++ +R  HP        R  L+ L +   I +  R  H +  D+ + +  +IK+
Sbjct: 156 RVLDTETLYKRLVHPINRPLQEKRYTLDELAEALKIPLHDR--HTSAGDALITAIAFIKI 213

Query: 175 M 175
           +
Sbjct: 214 V 214


>gi|261838819|gb|ACX98585.1| DNA polymerase III epsilon subunit [Helicobacter pylori 51]
          Length = 323

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 19/217 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 111 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 168 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 224

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182
           +R   S R  L+ L +  G  I     H A  D+     ++   ++            I+
Sbjct: 225 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 282

Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           F    N   +       ++T+    L +R K L   I
Sbjct: 283 FSKCANTLIKRPPRARHQETLVPFPLFERTKGLLNII 319


>gi|206603443|gb|EDZ39923.1| DNA polymerase III, epsilon subunit [Leptospirillum sp. Group II
           '5-way CG']
          Length = 265

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 9/172 (5%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+    D+ETTGL      RIIE+G     +     +     +  +         K++GI
Sbjct: 1   MKITFLDVETTGLLRDSRARIIELGFSTWENGKLLRKN-STLIK-SVDVVPDNISKINGI 58

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E LKD P F  ++    +  + Q +  +AHN  FDVG +N EL   N+ PL  +  ID
Sbjct: 59  TTEMLKDAPGFEDVWKSIKE--DFQGSILVAHNLAFDVGMVNRELILANRIPLG-NMGID 115

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           TL ++R+  P  S   L  + K  GI     S H A+ D   L  +   ++ 
Sbjct: 116 TLPLSRKMLPELSSYRLGEIAKHMGILNE--SPHRAMGDLETLEKILSNLLE 165


>gi|256843260|ref|ZP_05548748.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           crispatus 125-2-CHN]
 gi|256614680|gb|EEU19881.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           crispatus 125-2-CHN]
          Length = 926

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 9/171 (5%)

Query: 6   KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K    V D+ETTG   +N   II+ G   ++   K  +T+   + P+ R+     + L G
Sbjct: 7   KDTFAVVDLETTGTQRENGHHIIQFGC-AIIKNLKVVKTYSFLINPH-REIPQSVVNLTG 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I D+ +  +  F     +       QN  ++AHN  FD+ F+N EL +   + L  ++ I
Sbjct: 65  IHDQDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAI 121

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           DT+ +A+   P+     L+ L  + GI   H   H A  D++  + + +++
Sbjct: 122 DTVELAKIAFPTFPSYKLSDLTTQLGIK--HLDPHKADSDAYGTAVLLLEI 170


>gi|227878664|ref|ZP_03996579.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01]
 gi|256850383|ref|ZP_05555811.1| ATP-dependent DNA helicase [Lactobacillus crispatus MV-1A-US]
 gi|262046469|ref|ZP_06019431.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           crispatus MV-3A-US]
 gi|227861728|gb|EEJ69332.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01]
 gi|256712780|gb|EEU27773.1| ATP-dependent DNA helicase [Lactobacillus crispatus MV-1A-US]
 gi|260573340|gb|EEX29898.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           crispatus MV-3A-US]
          Length = 926

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 9/171 (5%)

Query: 6   KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K    V D+ETTG   +N   II+ G   ++   K  +T+   + P+ R+     + L G
Sbjct: 7   KDTFAVVDLETTGTQRENGHHIIQFGC-AIIKNLKVVKTYSFLINPH-REIPQSVVNLTG 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I D+ +  +  F     +       QN  ++AHN  FD+ F+N EL +   + L  ++ I
Sbjct: 65  IHDQDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAI 121

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           DT+ +A+   P+     L+ L  + GI   H   H A  D++  + + +++
Sbjct: 122 DTVELAKIAFPTFPSYKLSDLTTQLGIK--HLDPHKADSDAYGTAVLLLEI 170


>gi|161507964|ref|YP_001577928.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348953|gb|ABX27627.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 317

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 6/164 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + D+ETTGL    DRI E+G V++ +    ++   +   P   K      KL+GIT+E
Sbjct: 33  YTMLDVETTGLSPFRDRITELGGVKVRNGQIVDQYTNLVKFPKNNKVPAFITKLNGITEE 92

Query: 69  FLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +  +         EF +F  +     I +N  FD+ F+    Q+ N  P+  +  +D L
Sbjct: 93  QITNEGIPAEQAIKEFREFIGDD--TIIGYNVNFDLNFLYDLSQKYNL-PVLNNDYVDVL 149

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +AR  +P   N L    +R GI  +   +H  L DS     VY
Sbjct: 150 RLARVYYPRQHNRLIDCMQRAGI--AQVEQHHGLADSLDTIKVY 191


>gi|307564574|ref|ZP_07627114.1| exonuclease [Prevotella amnii CRIS 21A-A]
 gi|307346732|gb|EFN92029.1| exonuclease [Prevotella amnii CRIS 21A-A]
          Length = 287

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 14/210 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K K   IVFD+ETTGLD  NDRII+I  +++    K  R   +F+ P G++   E +
Sbjct: 1   MKLKLKRPLIVFDLETTGLDLVNDRIIQISYIKVYPDGKEERE-NIFINP-GKQIPEEVI 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
            L GIT+E +   P+F     E          ++   N  +FD+  +  E  R   +   
Sbjct: 59  ALTGITNEDVAKAPTFKEKGKELS--LKFTGCDFAGFNSNRFDIPMLAEEFLRAGIEFDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYIKMMV 176
              +++D  SI    H   R +L +  + Y G  +      H A  D+     V    + 
Sbjct: 117 SKCQLVDAQSI---FHKMERRNLAAAYEFYCGRKMEEDFKAHRADQDTEATWAVLQGEIE 173

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
             S  N   +T+E R  +     + + S +
Sbjct: 174 MYSSKN---QTDEKRILENSVDALADFSKM 200


>gi|161503006|ref|YP_001570118.1| exodeoxyribonuclease X [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864353|gb|ABX20976.1| hypothetical protein SARI_01068 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 231

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 23/169 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +          P  P   I T+ ++
Sbjct: 59  ADKPWIEDVIP-----LYYGSQWYVAHNASFDRRVL----------PELPGEWICTMKLS 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176
           RR  P  +    +L K   +++        H AL D ++ + + I ++ 
Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIIR 152


>gi|293380924|ref|ZP_06626958.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus crispatus 214-1]
 gi|290922499|gb|EFD99467.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus crispatus 214-1]
          Length = 926

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 9/171 (5%)

Query: 6   KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K    V D+ETTG   +N   II+ G   ++   K  +T+   + P+ R+     + L G
Sbjct: 7   KDTFAVVDLETTGTQRENGHHIIQFGC-AIIKNLKVVKTYSFLINPH-REIPQSVVNLTG 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I D+ +  +  F     +       QN  ++AHN  FD+ F+N EL +   + L  ++ I
Sbjct: 65  IHDQDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAI 121

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           DT+ +A+   P+     L+ L  + GI   H   H A  D++  + + +++
Sbjct: 122 DTVELAKIAFPTFPSYKLSDLTTQLGIK--HLDPHKADSDAYGTAVLLLEI 170


>gi|224373045|ref|YP_002607417.1| exonuclease [Nautilia profundicola AmH]
 gi|223588855|gb|ACM92591.1| exonuclease [Nautilia profundicola AmH]
          Length = 203

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 11/171 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGLD K D II IGAV + +     +R F +F+ P+ ++ S E++K+H IT +
Sbjct: 32  VVVDTETTGLDRKKDEIISIGAVIVKNNRVLLSRKFHIFVKPS-KELSIESIKIHKITPD 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127
            LK+     +    F +F   +    + +  +FDV  +N   +R +     +    +  +
Sbjct: 91  MLKNALEPETAIKMFLNFIKNR--PLVGYYLEFDVAMLNKLTKRYLGIKLPNRQIEVSAV 148

Query: 128 SIARR--KHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              ++    P    DL  +S+ K   + I  +  H AL D+ + + +YIK+
Sbjct: 149 YYDKKIGLIPQKHIDLRFDSIMKDLNLPIIGK--HDALNDAIMTALMYIKL 197


>gi|315057872|gb|ADT72201.1| Exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 256

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 7/147 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIE+TG  SK   I+EIGAV++ +  +  R FQ F+    ++      +L GIT E
Sbjct: 72  FCIVDIESTGGVSKG-EILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYE 127

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ PS + + S+F  F   +++ ++AHN +FD  FI+  L       L  +R I T+ 
Sbjct: 128 MVENAPSLTKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILL-NRRICTIE 184

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155
            A+    S +  L  L +  G+  +H 
Sbjct: 185 FAQCCIESPKYKLEVLKEFLGVENTHH 211


>gi|297584227|ref|YP_003700007.1| exonuclease RNase T and DNA polymerase III [Bacillus
           selenitireducens MLS10]
 gi|297142684|gb|ADH99441.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           selenitireducens MLS10]
          Length = 233

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 10/166 (6%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           VFD+ETTG    K DRI+ IG V++ +   T+ TF  F+  + +  S     L GI +E 
Sbjct: 53  VFDLETTGFFPQKQDRILSIGGVKIKNNEITDDTFYSFVYYD-QPISETIRHLTGIQEED 111

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P+ + + + F+ F   ++  +IAH+A  + GF+   L R  +      R+IDT+  
Sbjct: 112 VLNAPAEADVLTRFFAF--AEDDLFIAHHAAHEKGFMQDALWRSFRATFQR-RLIDTI-F 167

Query: 130 ARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             +  P  R+   L + C+ + I  + R  H AL D+ L ++++I 
Sbjct: 168 LTKLQPDLRDTAELEACCRYFNIEPAGR--HHALHDAKLAAELWIH 211


>gi|90417008|ref|ZP_01224937.1| ribonuclease T [marine gamma proteobacterium HTCC2207]
 gi|90331355|gb|EAS46599.1| ribonuclease T [marine gamma proteobacterium HTCC2207]
          Length = 221

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G +S+ D ++EI AV    +     +   T    + P  G     
Sbjct: 22  RFRGFLPVVVDVETGGFNSRTDAMLEIAAVILEMDAQGNIQIKETHSKNIDPFPGAVVEK 81

Query: 58  EALKLHGIT-----DEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
            AL+  GI          ++  +   IF       +         +AHNA FD+GF+NA 
Sbjct: 82  AALEFTGIDIYDPERMPEEEGEALRDIFRPIRHEISATGCTRSVMVAHNAHFDLGFVNAA 141

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           + R  I ++P  P    DT ++A   +   +  L   C+   +   +RS H AL D+   
Sbjct: 142 VNRNQIKRNPFHPFSCFDTSTLAGLAY--GQTVLAKACQAAKMDFDNRSAHSALYDAVKT 199

Query: 168 SDVYIKMMVGGSQIN 182
           ++++  ++     + 
Sbjct: 200 AELFCGIVNRWKDLG 214


>gi|209963909|ref|YP_002296824.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
 gi|209957375|gb|ACI98011.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
          Length = 212

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   + +      IG   + +     RT +  + P   + +P  + +HGI  E 
Sbjct: 8   LAIDFETA--NEQRASACSIGLCRVENGR-VVRTAEYLIRPPELRFTPFTIAIHGIRPED 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P F  I+         + A  +AHNA FD+  + A L       +     + TL  
Sbjct: 65  VVDAPEFPDIWDAMRPEL--EGAVLLAHNASFDMSVLRAMLGTYGL-AVPDHGYLCTLVA 121

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ARR  P   ++ LN L +++GI + H   H A  D+   + + ++ M 
Sbjct: 122 ARRAWPDLEKHRLNHLARQFGIELEH---HRAGSDARACAAIALRAMA 166


>gi|152995559|ref|YP_001340394.1| ribonuclease T [Marinomonas sp. MWYL1]
 gi|150836483|gb|ABR70459.1| ribonuclease T [Marinomonas sp. MWYL1]
          Length = 222

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 21/207 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGA-VELLDYSK---TNRTFQVFLCP-NGRKN 55
           K++ R    +V D+ET G + K D ++E+ A +  +D +     + T    + P  G   
Sbjct: 7   KDRFRGFLPVVIDVETAGFNQKTDALLEMAASILRMDENGDLYIHETLDFLIKPFEGANL 66

Query: 56  SPEALKLHGITD-----EFLKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFIN 107
              AL   GI       + + +  + + +FS+          + A  + HNA FD GF+N
Sbjct: 67  EKAALDFTGIDPFAPGRQDMPETEALNQMFSKVRKELKSVGCKRAILVGHNAAFDHGFLN 126

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           A ++R  I ++P  P    DT S+A       +  L   C+   I  S+   H A  D+ 
Sbjct: 127 AAIERADIKRNPFHPFSSFDTASLAGLVF--GQTVLAKACEAASIPFSNSEAHSAKYDTE 184

Query: 166 LLSDVYIKMMVGGSQINFGFKTNEDRF 192
             ++++ +M+    ++  G+   E+  
Sbjct: 185 KTAELFCEMVNRLKRLG-GWPLVENEA 210


>gi|303228659|ref|ZP_07315484.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Veillonella atypica ACS-134-V-Col7a]
 gi|302516639|gb|EFL58556.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 861

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 8/169 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+E+TG D+  DRII+I A+ +         F+ F+ P   K+   +  +HG TD +
Sbjct: 495 VVYDVESTGTDTTQDRIIQIAAMRIDKDGNEIERFERFINPG--KSVGTSQLVHGFTDAY 552

Query: 70  LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L +   S   +   F +F    N   + HN  +D+  ++ EL R N        + DTL 
Sbjct: 553 LAEHGESPKVVLEAFKEF--SNNRIIVGHNVNYDISILSHELARHNLGEPQFKAVYDTLD 610

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           I RR +P+   + L  L K +   I+H   H A+ D      + I  + 
Sbjct: 611 IFRRFYPTLENHKLGFLSKYF--PINHTPTHNAMDDIIATGQLLIYAVR 657


>gi|296101815|ref|YP_003611961.1| exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295056274|gb|ADF61012.1| exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 220

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET  L      I+E+ +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   VIDTETCDLQGG---IVEVASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEEVIPHYY-----GSPWYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   +++        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVRTPEGLHHHRALYDCYITAALLIDIM 151


>gi|296113547|ref|YP_003627485.1| ribonuclease T [Moraxella catarrhalis RH4]
 gi|295921241|gb|ADG61592.1| ribonuclease T [Moraxella catarrhalis RH4]
 gi|326559550|gb|EGE09964.1| ribonuclease T [Moraxella catarrhalis 7169]
 gi|326564652|gb|EGE14870.1| ribonuclease T [Moraxella catarrhalis 46P47B1]
 gi|326567767|gb|EGE17873.1| ribonuclease T [Moraxella catarrhalis BC1]
          Length = 232

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 82/221 (37%), Gaps = 24/221 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++  D ++EI  V    +              + P +G    P
Sbjct: 15  RFRGFLPVVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEP 74

Query: 58  EALKLHGIT-DEFLKDKPSFSS--IFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
            ALK  GI  D   +   S          +            +    + HNA FD+GF+N
Sbjct: 75  AALKFTGINPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLN 134

Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A + R N     P     ++DT+S A   +      L   C   G+   ++  H AL D+
Sbjct: 135 AAIARTNSKNHSPFHTFSVLDTVSFAALTY--GHTVLAKTCMIAGLEFDNQHAHSALYDA 192

Query: 165 HLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL 205
              ++++  ++      N    TN     + +  T P+ + 
Sbjct: 193 QKTAELFCHIVNQ----NTLLSTNHANLTQNDTPTSPHQTP 229


>gi|238755817|ref|ZP_04617148.1| Exodeoxyribonuclease 10 [Yersinia ruckeri ATCC 29473]
 gi|238705975|gb|EEP98361.1| Exodeoxyribonuclease 10 [Yersinia ruckeri ATCC 29473]
          Length = 249

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 23/174 (13%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           KM   V D ET GLD     I+EI +++ +D   TN      + P+ R  S EA+ +H I
Sbjct: 29  KMNFRVIDTETCGLDGG---IVEIASLDFIDGEITN-PMSDLVSPD-RPISIEAMAIHHI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+E ++ KP  +    ++     + +  ++AHNA FD G +          P      I 
Sbjct: 84  TEEMVEGKPRIAVAVGKY-----QGSPYYVAHNAPFDRGVL----------PEMGGEWIC 128

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMMV 176
           T  +AR  +P  +     L     + ++  +    H AL D ++ + ++ ++M 
Sbjct: 129 TYKLARALYPDIKYSNQYLRYALRLDVTPPADLYPHRALYDCYITAALFQRIMR 182


>gi|306827727|ref|ZP_07460999.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes ATCC 10782]
 gi|304430045|gb|EFM33082.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes ATCC 10782]
          Length = 819

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 75/176 (42%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K   +  V D+E TG       I     +   +  K   +++  + P+        +
Sbjct: 1   MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P F  +    +     ++  ++AHN KFD   +   L     +   P
Sbjct: 58  HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DT+ +A+   P   + +L  L ++  I ++    H A+ D+   + ++++++
Sbjct: 116 --RVDTVELAQLFFPRFEKYNLGHLSRQLNIDLA--EAHTAIADARATAILFLRLL 167


>gi|21672469|ref|NP_660536.1| ribonuclease T [Buchnera aphidicola str. Sg (Schizaphis graminum)]
 gi|25009131|sp|Q8K9V5|RNT_BUCAP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|21623085|gb|AAM67747.1| ribonuclease T [Buchnera aphidicola str. Sg (Schizaphis graminum)]
          Length = 219

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 25/205 (12%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGR 53
           +  N+ R    +V DIET G + K D ++EI  +    + L +          + P  G 
Sbjct: 9   LLSNRFRTFYPVVIDIETAGFNPKTDAVLEIALITLKMDKLGWLHKEDILHFHIKPFKGS 68

Query: 54  KNSPEALKLHGITD-EFLKDKPSFSSIFSEFWD----FFNEQNA---EWIAHNAKFDVGF 105
             + +A+  + I     L+   S +       +        Q       +AHNA FD  F
Sbjct: 69  IINSDAIAFNKIDPFNPLRGAISETLAIESILEKVNYGIKIQGCTRGIVVAHNAHFDHNF 128

Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A +QR  I  +P  P    DT +++       +  L   CK  G++  +   H AL D
Sbjct: 129 LMAAIQRVKIKNNPFHPFVTFDTAALSGLA--VGQTVLAKACKAIGLSFDNNQAHSALYD 186

Query: 164 SHLLSDVYIKMM-----VGGSQINF 183
           S   ++++ K++     +GG  IN 
Sbjct: 187 SLQTANLFCKIVNRWKGLGGWPINV 211


>gi|260063517|ref|YP_003196597.1| putative DNA polymerase III subunit epsilon [Robiginitalea
           biformata HTCC2501]
 gi|88782961|gb|EAR14135.1| putative DNA polymerase III epsilon chain [Robiginitalea biformata
           HTCC2501]
          Length = 258

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 15/212 (7%)

Query: 2   IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           ++ N  + I  FD+ETTG +   DRI+E+  +++  + +K ++T+   + P G     EA
Sbjct: 1   MKLNLSKPICFFDLETTGTNIATDRIVELAILKVFPNGNKESKTW--LVNP-GVPIPEEA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGITDE +  +P+F  +  E +     Q  +    N  +FD+  +  EL R   D  
Sbjct: 58  SAIHGITDEKVAGEPTFRELAREVYQMI--QGCDLAGFNSNRFDIPLLAEELLRAGVDFD 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVG 177
             + +  ++ +    H   +  L +  + Y G  ++    H A  D+    +V +  +  
Sbjct: 116 MKNAV--SVDVQTIFHKMEKRTLAAAYQFYCGKELTD--AHSATADTQATYEVLLSQLDR 171

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
            S++    +  E   F     TV     ++RD
Sbjct: 172 YSELTNNVQ--ELAAFSTHNDTVDFAGFIRRD 201


>gi|86153724|ref|ZP_01071927.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121612917|ref|YP_001000159.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005117|ref|ZP_02270875.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85842685|gb|EAQ59897.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87250067|gb|EAQ73025.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 253

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 7/147 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIE+TG  SK   I+EIGAV++ +  +  R FQ F+    ++      +L GIT E
Sbjct: 72  FCIVDIESTGGVSKG-EILEIGAVKIQNSKEIAR-FQSFVK--VKEIPENITELTGITYE 127

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ PS + + S+F  F   +++ ++AHN +FD  FI+  L       L  +R I T+ 
Sbjct: 128 MVENAPSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISRALNECGFGILL-NRRICTIE 184

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155
            A+    S +  L  L +  G+  +H 
Sbjct: 185 FAQCCIESPKYKLEVLKEFLGVENTHH 211


>gi|307638212|gb|ADN80662.1| DNA polymerase III epsilon subunit [Helicobacter pylori 908]
 gi|325996805|gb|ADZ52210.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2018]
 gi|325998398|gb|ADZ50606.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2017]
          Length = 287

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 84/211 (39%), Gaps = 10/211 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVRGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 132 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           +R   S R  L+ L +  G  I     H A  D+     ++   ++     ++   T + 
Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNL--PSYIKTTMDL 244

Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
             F +   T+       R + + +  +  E 
Sbjct: 245 IDFSKCANTLIKRPPRSRYQEIPSPFSLFER 275


>gi|270290674|ref|ZP_06196898.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4]
 gi|270280734|gb|EFA26568.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4]
          Length = 178

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET            I    + +   T+  +   + P   K     +++HGI 
Sbjct: 1   MNFVAIDFETA--APARASACSIALTVVQNDQITDELYS-LINPET-KFHWRNVQVHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++D P+F  ++     FF       +AHNA FD   +   L+R   + L P + +DT
Sbjct: 57  EADVQDAPTFPELWPILQPFFTPDQLV-VAHNANFDNSVLKKTLERYELNRL-PYQTLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L  +R   P+   + LN+LC   GI + H   H AL DS   +++ +
Sbjct: 115 LRTSRSFFPNYPNHKLNTLCDNLGIELEHH--HNALDDSLACANILL 159


>gi|34541463|ref|NP_905942.1| exonuclease [Porphyromonas gingivalis W83]
 gi|34397780|gb|AAQ66841.1| exonuclease [Porphyromonas gingivalis W83]
          Length = 259

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 16/211 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   I FD+ETTG+D   DRI+EI  ++++ D S+  +T    + P  R   PE+
Sbjct: 1   MKLNLKNPLIFFDLETTGVDLVRDRIVEISILKVMPDGSEECKT--RRINPE-RPIPPES 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP- 117
             +HGI DE +KD P F S+      +   +  +    N  +FDV  +  E  R   D  
Sbjct: 58  TAIHGIRDEDVKDCPPFRSVAKSLAQWI--EGCDLAGFNSTRFDVPMLVEEFLRAGVDID 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   ++ID  +I  +  P     L +  + Y    +  + H A  D+    DV+   +  
Sbjct: 116 LRHRKLIDVQTIFHKMEP---RTLEAATRFY-CNRTLENAHSAEADTRATYDVFKAQLDR 171

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
                 G   N+  F  +  +   N+    R
Sbjct: 172 YE----GTLENDMAFLADFSRQSRNVDFAGR 198


>gi|223044042|ref|ZP_03614082.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus capitis
           SK14]
 gi|222442585|gb|EEE48690.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus capitis
           SK14]
          Length = 184

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V++++   T  +F   + P     +   + +HGI  E
Sbjct: 6   FVALDFETA--NGKRTSICSVGMVKVINNQIT-ESFYTLVNPFDY-FTETNINVHGIRPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D PSF  ++     F NE     +AHNA FD+  ++  L+ +N +         +  
Sbjct: 62  NVEDAPSFEYVYPYMLKFINE--LPVVAHNAAFDMNVLHQSLKSLNIET-PSMTYFCSYQ 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+R   + R  L  L   Y +       H AL D+   + +  +++
Sbjct: 119 LAKRTIDAYRYGLKHLMNHYQLDF--HGHHDALNDAKACAMITFRLL 163


>gi|283851810|ref|ZP_06369087.1| DNA polymerase III, epsilon subunit [Desulfovibrio sp. FW1012B]
 gi|283572726|gb|EFC20709.1| DNA polymerase III, epsilon subunit [Desulfovibrio sp. FW1012B]
          Length = 249

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 23/183 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D E TG D +   ++ IGAV L   S      F   + P       +A  +H +T 
Sbjct: 49  FVAVDTELTGFDPRRHALVSIGAVRLRGLSILPGEAFYTLVRPPAA-VPRDATLIHRLTG 107

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L D P  +   + F DF     A  + H+   D+GF+NA  +R     L  +  IDTL
Sbjct: 108 AALADAPPVAEALAAFLDFLGP--AVVVGHHVDLDMGFLNAAARRHMGGELA-APCIDTL 164

Query: 128 SIARRK----------------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +A                          L +LC+RYG+     + H A  D+   + ++
Sbjct: 165 RLAMALEEKRLAVAGGAGGPDGFERVDYRLPALCRRYGLP--GFAAHDARADALATAYLF 222

Query: 172 IKM 174
           + +
Sbjct: 223 LYL 225


>gi|303231325|ref|ZP_07318060.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514005|gb|EFL56012.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
          Length = 861

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 8/169 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+E+TG D+  DRI++I A+ +         F+ F+ P   K+   +  +HG TD +
Sbjct: 495 VVYDVESTGTDTTEDRIVQIAAMRIDKDGNEIERFERFINPG--KSVGTSQLVHGFTDAY 552

Query: 70  LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L +   S   +   F +F    N   + HN  +D+  ++ EL R N        + DTL 
Sbjct: 553 LAEHGESPKVVLEAFKEF--SNNRIIVGHNVNYDISILSHELARHNLGEPQFKAVYDTLD 610

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           I RR +P+   + L  L K +   I+H   H A+ D      + I  + 
Sbjct: 611 IFRRFYPTLENHKLGFLSKYF--PINHTPTHNAMDDIIATGQLLIYAVR 657


>gi|330001239|ref|ZP_08303928.1| exodeoxyribonuclease 10 [Klebsiella sp. MS 92-3]
 gi|328537753|gb|EGF63955.1| exodeoxyribonuclease 10 [Klebsiella sp. MS 92-3]
          Length = 219

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++D   TN      + P+ R  SP+A+ +H IT+E +
Sbjct: 4   VIDTETCGLQGG---IVEIASVDIVDGQITNPMSH-LVRPD-RPISPQAMAIHRITEEMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I   +       +  ++AHNA FD   +          P      I T+ +A
Sbjct: 59  ADKPWIEEIIPHYH-----GSPWYVAHNASFDRRVL----------PEMHGEGICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +     L K   + +        H AL D ++ + + + ++
Sbjct: 104 RRLWPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYITAALLLDII 151


>gi|121596441|ref|YP_988337.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42]
 gi|120608521|gb|ABM44261.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42]
          Length = 218

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 9/153 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTG+   +  R  E+  V L++  +    +Q  +   G +  P   +L GIT+
Sbjct: 6   IAVIDFETTGMMPAQGARATEVAIV-LMEGGRVVDRYQSLMR-TGVRIPPFITQLTGITN 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  P  +++  E   F    +A  +AHNA FD  F  AELQ        P     T+
Sbjct: 64  AMVEAAPDAAAVMREAARFVG--DAPMVAHNAAFDRKFWQAELQHAGLAAPHPFA--CTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHG 159
            ++RR +P    + L  L    G+  + R  H 
Sbjct: 120 LLSRRVYPDAPSHSLGRLTDHLGLPRAGR-AHR 151


>gi|222109241|ref|YP_002551505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY]
 gi|221728685|gb|ACM31505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY]
          Length = 218

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 9/153 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTG+   +  R  E+  V L++  +    +Q  +   G +  P   +L GIT+
Sbjct: 6   IAVIDFETTGMMPAQGARATEVAIV-LMEGGRVVDRYQSLMR-TGVRIPPFITQLTGITN 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  P  +++  E   F    +A  +AHNA FD  F  AE+Q        P     T+
Sbjct: 64  AMVEAAPDAAAVMREAARFVG--DAPMVAHNAAFDRKFWQAEMQHAGLAAPHPFA--CTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHG 159
            ++RR +P    + L  L    G+  + R  H 
Sbjct: 120 LLSRRVYPDAPSHSLGRLTDHLGLPRAGR-AHR 151


>gi|209559092|ref|YP_002285564.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes NZ131]
 gi|209540293|gb|ACI60869.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus pyogenes NZ131]
          Length = 833

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 75/176 (42%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K   +  V D+E TG       I     +   +  K   +++  + P+        +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P F  +    +     ++  ++AHN KFD   +   L     +   P
Sbjct: 72  HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 129

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DT+ +A+   P   + +L  L ++  I ++    H A+ D+   + ++++++
Sbjct: 130 --RVDTVELAQLFFPRFEKYNLGHLSRQLNIDLA--EAHTAIADARATAILFLRLL 181


>gi|94993950|ref|YP_602048.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS10750]
 gi|94547458|gb|ABF37504.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes
           MGAS10750]
          Length = 833

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 75/176 (42%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K   +  V D+E TG       I     +   +  K   +++  + P+        +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P F  +    +     ++  ++AHN KFD   +   L     +   P
Sbjct: 72  HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 129

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DT+ +A+   P   + +L  L ++  I ++    H A+ D+   + ++++++
Sbjct: 130 --RVDTVELAQLFFPRFEKYNLGHLSRQLNIDLA--EAHTAIADARATAILFLRLL 181


>gi|319399859|gb|EFV88106.1| exonuclease family protein [Staphylococcus epidermidis FRI909]
          Length = 184

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V+++D   T  +F   + P     +   + +HGI  E
Sbjct: 6   FVALDFETA--NGKRTSICSVGMVKVIDNQIT-ESFHTLVNPFDY-FTETNINVHGIHPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++D P F  ++     F ++     +AHNA FD+  ++  L+ +N D         +  
Sbjct: 62  DVQDAPGFKHVYPYMLQFIDQ--LPVVAHNAAFDMNVLHQSLKSLNIDT-PSLTYFCSYQ 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+R   + R  L  L   Y +       H AL D+   + +  +++
Sbjct: 119 LAKRTINAYRYGLKHLMNHYHLDF--HGHHDALNDAKACAMITYRLL 163


>gi|308185320|ref|YP_003929453.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180]
 gi|308061240|gb|ADO03136.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180]
          Length = 287

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 8/161 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 75  FVDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 132 LNAPSTHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +R   S R  L+ L +  G  I     H A  D+     ++
Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLF 227


>gi|227519479|ref|ZP_03949528.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX0104]
 gi|257084298|ref|ZP_05578659.1| exonuclease [Enterococcus faecalis Fly1]
 gi|257416905|ref|ZP_05593899.1| exonuclease [Enterococcus faecalis AR01/DG]
 gi|257421652|ref|ZP_05598642.1| exonuclease [Enterococcus faecalis X98]
 gi|307288644|ref|ZP_07568625.1| exonuclease [Enterococcus faecalis TX0109]
 gi|227073091|gb|EEI11054.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX0104]
 gi|256992328|gb|EEU79630.1| exonuclease [Enterococcus faecalis Fly1]
 gi|257158733|gb|EEU88693.1| exonuclease [Enterococcus faecalis ARO1/DG]
 gi|257163476|gb|EEU93436.1| exonuclease [Enterococcus faecalis X98]
 gi|306500398|gb|EFM69734.1| exonuclease [Enterococcus faecalis TX0109]
 gi|315155598|gb|EFT99614.1| exonuclease [Enterococcus faecalis TX0043]
 gi|315165305|gb|EFU09322.1| exonuclease [Enterococcus faecalis TX1302]
          Length = 188

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 14/181 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M    FD ET            I  V++ +    +  F   + P          ++HGI 
Sbjct: 12  MNFYAFDFETA--SYDKHSACSIAIVKVENSRIVDE-FYTLIKPET-PFFWRNTQIHGIH 67

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + + P F  ++ +      + N   +AHNA FD   +   L     +       + T
Sbjct: 68  ESDVANAPKFPEVWQQI-QHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQ-PNYLSLCT 125

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +  +R+  P    + LN++C+   IT+++   H AL DS   +++ +       +  FG 
Sbjct: 126 VKTSRKLFPEFPNHKLNTVCENLNITLNNH--HDALEDSRACAEILL-----QQEQRFGV 178

Query: 186 K 186
           +
Sbjct: 179 E 179


>gi|304382373|ref|ZP_07364875.1| DNA polymerase III epsilon chain [Prevotella marshii DSM 16973]
 gi|304336490|gb|EFM02724.1| DNA polymerase III epsilon chain [Prevotella marshii DSM 16973]
          Length = 284

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 60/216 (27%), Positives = 95/216 (43%), Gaps = 16/216 (7%)

Query: 2   IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  R  IVFD+ETTGLD  NDRII++  +++L      R   +F+ P  R    E +
Sbjct: 1   MKLNLTRPLIVFDLETTGLDLVNDRIIQLSYIKVLPDGTELRK-NIFINPE-RSIPKEVV 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
           +L GITD+ +K+ P+F  +  +  + F  +  ++  +N   FD+  +  E  R   D   
Sbjct: 59  ELTGITDDDVKEAPTFKEMAPDLNNEF--RGCDFAGYNSNHFDIPMLAEEFLRAGIDFDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVY---IK 173
              R+ID  +I    H   R  L +  K Y G  +    + H A  D+     V    ++
Sbjct: 117 SKCRLIDAQTI---FHKMERRHLAAAYKFYCGRKMEEDFTAHRADEDTEATYRVLQGELE 173

Query: 174 MMVGGSQINFGFKTNED-RFFKEEKKTVPNISLLKR 208
           M   G Q     +   D     E  K   N+    R
Sbjct: 174 MYQPGKQEEAERQLENDMDVLAEFSKNNNNVDFAGR 209


>gi|94988157|ref|YP_596258.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS9429]
 gi|94992044|ref|YP_600143.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS2096]
 gi|94541665|gb|ABF31714.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes
           MGAS9429]
 gi|94545552|gb|ABF35599.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes
           MGAS2096]
          Length = 833

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 75/176 (42%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K   +  V D+E TG       I     +   +  K   +++  + P+        +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P F  +    +     ++  ++AHN KFD   +   L     +   P
Sbjct: 72  HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 129

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DT+ +A+   P   + +L  L ++  I ++    H A+ D+   + ++++++
Sbjct: 130 --RVDTVELAQLFFPRFEKYNLGHLSRQLNIDLA--EAHTAIADARATAILFLRLL 181


>gi|71892146|ref|YP_277878.1| ribonuclease T [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|123640967|sp|Q492U0|RNT_BLOPB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|71796252|gb|AAZ41003.1| ribonuclease T [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 217

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 80/196 (40%), Gaps = 18/196 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLC-PNGRKNSP 57
           R      +V D+ET GLD+  + ++EI      ++   +   + +    +    G    P
Sbjct: 13  RFRGFYPVVVDVETAGLDANINALLEIAVATFKMDEYGWLCVDGSLNFHIKSFPGAIIQP 72

Query: 58  EALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109
           E+L  +GI  +  L+   +      E ++             A  +AHNA FD  F+ A 
Sbjct: 73  ESLAFNGIDLNSPLRAAVTEQEALHEIFEMVRQGIKTQGCSRAIIVAHNAFFDHSFLMAA 132

Query: 110 LQR---INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           ++R   + K+P  P  + DT +++       +  L   C   G+       H AL D+  
Sbjct: 133 VERVSFMEKNPFHPFVMFDTATLSGLVF--GQTVLAKACACAGVFFDKNKAHSALYDTER 190

Query: 167 LSDVYIKMMVGGSQIN 182
            + ++ +++    ++ 
Sbjct: 191 TAMLFCELVNKWKRLG 206


>gi|91202954|emb|CAJ72593.1| strongly similar DNA polymerase epsilon subunit (3'-5' exonuclease)
           [Candidatus Kuenenia stuttgartiensis]
          Length = 204

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 10/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D ET   ++K   +  +G   + + +   RT    + P      P +  +HGI+
Sbjct: 1   MKCVAIDFETA--NAKRSSVCSLGLAIIEEQTIVKRT-SWLIRPPELYFDPFSTYIHGIS 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + ++DKP F  ++ E + F   + +  +AHNA FD+  +   L      P  P     T
Sbjct: 58  AKDVEDKPEFYQLWDEIFPFL--EGSYLVAHNASFDMSVLCCILDVYKI-PYPPLNYFCT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L+IA+R  P      LN + +   I   H   H A  D+   + + + 
Sbjct: 115 LAIAKRVWPGLLGYALNKISRYLEIEFKH---HDAEEDAVACAKILLH 159


>gi|255029619|ref|ZP_05301570.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes LO28]
          Length = 132

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 6/132 (4%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + R IV D+ETTG  + + DRII+  A   ++  K   T+  FL P  +       +L G
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + +K+ P F  +     +    ++  ++AHN  FD  F+  E+ R     L   + +
Sbjct: 61  ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117

Query: 125 DTLSIARRKHPS 136
           DT+ +AR  +P 
Sbjct: 118 DTVELARIMYPG 129


>gi|157145382|ref|YP_001452701.1| exodeoxyribonuclease X [Citrobacter koseri ATCC BAA-895]
 gi|157082587|gb|ABV12265.1| hypothetical protein CKO_01122 [Citrobacter koseri ATCC BAA-895]
          Length = 220

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+EI +V+++     N      + P+ R  SP+A+ +H I++  +
Sbjct: 4   VIDTETCGLQGG---IVEIASVDVVAGRIVNPMSH-LVRPD-RPISPQAMAIHRISESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I           +  ++AHNA FD   +          P  P   I T+ ++
Sbjct: 59  ADKPWIEDIIP-----LYHGSEWYVAHNASFDRRVL----------PEMPGEWICTMKLS 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   +++        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151


>gi|126664190|ref|ZP_01735182.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
 gi|126623722|gb|EAZ94418.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
          Length = 202

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 9/166 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHG 64
           K R +VFD ETTGLD K+DRI+ IGAV + +       F +VFL  +  K   E++ +HG
Sbjct: 31  KKRYVVFDCETTGLDYKSDRILSIGAVAIENNQIIVGDFMEVFLLQDVFK--AESVPIHG 88

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI- 123
           I  E  ++K   +     F +F   ++A  + H+  FD+  IN  L R+    L    + 
Sbjct: 89  ILKEGKEEKIVEAEAIIRFLEFI--KDATLVGHHVDFDIEMINQGLARLEVGKLKNQAMD 146

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168
            D +    +  P  ++  L+ LC  Y I  S R  H A  D+ + +
Sbjct: 147 TDVMYQKLKYLPQEQHSSLDELCDIYKIRKSDR--HTASGDAFITA 190


>gi|258545959|ref|ZP_05706193.1| ribonuclease T [Cardiobacterium hominis ATCC 15826]
 gi|258518837|gb|EEV87696.1| ribonuclease T [Cardiobacterium hominis ATCC 15826]
          Length = 212

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 94/207 (45%), Gaps = 20/207 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNS 56
           R      +V D+ET G D+K D ++E+ AV L+++ +  R     T    + P  G    
Sbjct: 9   RFRGFLPVVIDVETGGFDAKKDALLELAAV-LVNFDENQRLCRTHTIHYHIHPFPGANID 67

Query: 57  PEALKLHGITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINA 108
           PEALK+ GI     L+           F+D             +  + HNA FD+GFINA
Sbjct: 68  PEALKITGIDPYHPLRPAYHEDKAAERFFDEIRAYQKQQECTRSILVGHNATFDLGFINA 127

Query: 109 ELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +R    ++P  P  ++DT+S+    +   +  L  + ++ G        HGA  D+ L
Sbjct: 128 LAERTDYKRNPFHPFSVLDTVSLGALAY--GQTVLARIARQGGFEYDSSKAHGAKYDAEL 185

Query: 167 LSDVYIKMM-VGGSQINFGFKTNEDRF 192
            +D++  ++     ++ + +  +E++ 
Sbjct: 186 TADIFCHIVNTWAEKVGYSWPASEEQP 212


>gi|188528322|ref|YP_001911009.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470]
 gi|188144562|gb|ACD48979.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470]
 gi|308064307|gb|ADO06194.1| DNA polymerase III subunit epsilon [Helicobacter pylori Sat464]
          Length = 287

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 85/217 (39%), Gaps = 19/217 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYITELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 132 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182
           +R   S R  L+ L +  G  I     H A  D+     ++   ++            I+
Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246

Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           F    N   +       ++T P  SL +R K L   I
Sbjct: 247 FSKCANTLIKRPPRARHQETPPPFSLFERTKGLLNII 283


>gi|15612503|ref|NP_224156.1| DNA polymerase III subunit epsilon [Helicobacter pylori J99]
 gi|4156060|gb|AAD07016.1| DNA POLYMERASE III [Helicobacter pylori J99]
          Length = 323

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 8/161 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 111 FVDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 168 LNAPSAHEALQELRIFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 224

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +R   S R  L+ L +  G  I     H A  D+     ++
Sbjct: 225 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLF 263


>gi|225021962|ref|ZP_03711154.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945248|gb|EEG26457.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 456

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 84/212 (39%), Gaps = 13/212 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE---ALKLHGI 65
            +  D+ET   ++    I +IG V + D  + +     +LC             +++HGI
Sbjct: 113 FVGVDVETA--NADWGSICQIGVVRVTDGMQVDS--HEWLCQPPAGIDHFDEGNIRIHGI 168

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + + D P F+++F E   +  +Q    +AHNA+FD+   +         P+   +   
Sbjct: 169 TPDMVTDAPDFATVFPEVVAYVADQ--VLVAHNAQFDLTAFSRACHATG-TPVPHWKFAC 225

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           +L+ +R      + + L  + +  G+ + +   H A+ D+   + +++++ +        
Sbjct: 226 SLAASRAAKLGITSHRLPVVAQHLGVELDNH--HDAVADARACAGIFVQLALRAHATGDI 283

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                   F         I  +  + P  T  
Sbjct: 284 ETVFTTLGFSLGDLNTERIYPVLSNPPTVTVA 315


>gi|163794470|ref|ZP_02188441.1| DNA polymerase III, epsilon subunit [alpha proteobacterium BAL199]
 gi|159180194|gb|EDP64717.1| DNA polymerase III, epsilon subunit [alpha proteobacterium BAL199]
          Length = 458

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I  DIETTGLD+     ++ GA+ +     K +   +  L P G      ++ +HGITD 
Sbjct: 15  IAIDIETTGLDASRAHAVQFGAIPIAKGVLKPDDACEQMLNP-GIPIPSSSIAIHGITDA 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P+ S ++         +N   I H+  FD+  + AE +R   D   P R +    
Sbjct: 74  MVRNAPTLSDVWPNLVG--QWKNRVVIGHSIGFDLTVLAAEAKRKKLDWQKP-RALCVRM 130

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A    P+ + + L++L       +  R++H AL D+     +++ ++
Sbjct: 131 LATIAAPTLASHSLDALATWLN--LETRNRHRALGDAEAAGLIFLALI 176


>gi|313843978|ref|YP_004061641.1| hypothetical protein OlV1_008c [Ostreococcus lucimarinus virus
           OlV1]
 gi|312599363|gb|ADQ91385.1| hypothetical protein OlV1_008c [Ostreococcus lucimarinus virus
           OlV1]
          Length = 447

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 87/229 (37%), Gaps = 22/229 (9%)

Query: 7   MRKIVFDIETTGL---------------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
           M  I FD ET+GL               +    R + + A       +  +TF   + P+
Sbjct: 5   MNYIAFDFETSGLPRGRRNTKVTHETLSNFDGCRAVSLSAARFSQRGRLIKTFDAIIRPD 64

Query: 52  GRKNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           G +   E++ +HGI++E  L +   F  ++ +F +F   +    +AHNA+FD   + +E+
Sbjct: 65  GFQIGEESIAIHGISNEKALSEGRPFPEVYRDFMEFIGPRTKTLVAHNAQFDTSVLQSEM 124

Query: 111 QRINKDPLDPSRII--DTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLL 167
            R          ++   TL + R +       L  L    +G    +   H +L DS   
Sbjct: 125 LRHGIPLEQIDDLVIRCTLEMYRDRF-MGPIKLTKLYADIFGEEFDN--AHNSLADSIAC 181

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             VY  ++    +        +         +   I+  K+ + L   +
Sbjct: 182 GRVYPYLLGQTERTLKPLPIKKVIIGASSVASAIGINQYKKPQELVEEL 230


>gi|146312061|ref|YP_001177135.1| exodeoxyribonuclease X [Enterobacter sp. 638]
 gi|145318937|gb|ABP61084.1| Exodeoxyribonuclease X [Enterobacter sp. 638]
          Length = 220

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET  L      I+E+ +V++++    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   VIDTETCDLQGG---IVEVASVDVINGQIVNPMSH-LVRPD-RPISPQAMAIHRITESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   ++      +  ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEEVIPNYY-----GSTWYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKSRKLNVKTPEGLHHHRALYDCYITAALLIDIM 151


>gi|312963198|ref|ZP_07777682.1| DNA polymerase III epsilon subunit [Pseudomonas fluorescens WH6]
 gi|311282464|gb|EFQ61061.1| DNA polymerase III epsilon subunit [Pseudomonas fluorescens WH6]
          Length = 203

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 9/177 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EIG V +L+       +Q  +   G +      +L GI+
Sbjct: 3   RIAVIDFETTGITPSSHCRATEIGVV-ILERGHIVDRYQSLMN-AGVRVPAFIEQLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  L+  P    + +E  +F        +AHNA FD  F + EL  I +  L   +   +
Sbjct: 61  NAMLRSAPPAERVMNEVNEFVGT--TPLMAHNAAFDQKFWDYELGLIRRTRL--QKFACS 116

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           L +ARR  P +  + L +L     +       H AL D+ + +++   +     Q +
Sbjct: 117 LLLARRLMPAAPNHKLGTLNSYAQLP-HTGQAHRALADAEMAANLTTHLARELRQTH 172


>gi|86151527|ref|ZP_01069741.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315123999|ref|YP_004066003.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|85841156|gb|EAQ58404.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315017721|gb|ADT65814.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 253

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 7/147 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIE+TG  SK   I+EIGA ++ +  +  R FQ F+    ++      +L GIT E
Sbjct: 72  FCIVDIESTGGVSKG-EILEIGAAKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYE 127

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ PS + + S+F  F   +++ ++AHN +FD  FI+  L       L  +R I T+ 
Sbjct: 128 MVENAPSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILL-NRRICTIE 184

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155
            A+    S +  L  L +  G+  +H 
Sbjct: 185 FAQCCIESPKYKLEVLKEFLGVENTHH 211


>gi|301058175|ref|ZP_07199227.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [delta proteobacterium NaphS2]
 gi|300447807|gb|EFK11520.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [delta proteobacterium NaphS2]
          Length = 233

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 19/189 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD E TGL  + D II IGAV + +       TF   + P G+  +P  L +H IT 
Sbjct: 42  FVVFDTELTGLKQRRDEIIAIGAVRIKNARICFEDTFYALIKPQGKLYTPSTL-IHRITP 100

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L+       +   F DF     A  + H+   D+GF+N   Q      +  S  +DTL
Sbjct: 101 GELRGAEPIEEVLPRFIDFCG--GAFLVGHHVSLDLGFVNRACQNYLGGVI-KSPSLDTL 157

Query: 128 SIAR------------RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +AR             +       L+SL   + +     ++H AL D+   + ++I ++
Sbjct: 158 RLARAYKTSLNGPHLDHQEQQDSYKLSSLSDEFHLP--KFAEHNALQDALQTAYLFIYLI 215

Query: 176 VGGSQINFG 184
                 + G
Sbjct: 216 HKMRNGDTG 224


>gi|281419997|ref|ZP_06250996.1| exonuclease [Prevotella copri DSM 18205]
 gi|281405797|gb|EFB36477.1| exonuclease [Prevotella copri DSM 18205]
          Length = 287

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 15/232 (6%)

Query: 2   IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  +  IVFD+ETTGLD   DRII+I  ++++     +R   +++ P   +   E +
Sbjct: 1   MKLNLTKPLIVFDLETTGLDMIKDRIIQISYIKVMPDGTEDRK-NLYVNP-CMEIPAEVV 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
            L GI++E +KD P+F  + +     F     ++  +N   FDV  +  E  R   D   
Sbjct: 59  ALTGISNEDVKDAPTFKQLAATLEKEF--TGCDFAGYNSNHFDVPMLAEEFLRAGIDFDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYIKMMV 176
           +  R+ID  +I  +     R +L +  K Y G  +      H A  D+     V +  + 
Sbjct: 117 NKCRLIDAQTIFMKM---ERRNLAAAYKFYCGRKMEEDFEAHRADQDTEATYRVLMGELD 173

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
             +    G +   +R        + + S  K +     RI  EE+ +    +
Sbjct: 174 KYAP---GVQDEPERVLNNNMDELADFSKQKDNVDFAGRIVWEEVKDAQGNV 222


>gi|50913902|ref|YP_059874.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS10394]
 gi|139474153|ref|YP_001128869.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes str. Manfredo]
 gi|50902976|gb|AAT86691.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes
           MGAS10394]
 gi|134272400|emb|CAM30656.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes str.
           Manfredo]
          Length = 833

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K   +  V D+E TG       I     +   +  K   +++  + P+        +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P F  +    +     ++  ++AHN KFD   +   L     +   P
Sbjct: 72  HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 129

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DT+ +A+   P   + +L+ L ++  I ++    H A+ D+   + ++++++
Sbjct: 130 --RVDTVELAQLFFPRFEKYNLSHLSRQLNIDLA--EAHTAIADARATAILFLRLL 181


>gi|270293052|ref|ZP_06199263.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus sp. M143]
 gi|270279031|gb|EFA24877.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus sp. M143]
          Length = 157

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 10/166 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +     R +V D+E T   SK  +II++G V + +    N+ +   + P+         +
Sbjct: 1   MNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIINQ-YATDVNPH-EPLDSHIKE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+TD  L   P FS +  + ++    ++  ++AHN +FD   +   L     +   P 
Sbjct: 58  LTGLTDRRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLLAEFLFFEGYELRTP- 114

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +DT+ +A+  +P   + +L  LC+  GI + H   H AL D+  
Sbjct: 115 -RVDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQA 157


>gi|302342239|ref|YP_003806768.1| DNA polymerase III, subunit epsilon [Desulfarculus baarsii DSM
           2075]
 gi|301638852|gb|ADK84174.1| DNA polymerase III, epsilon subunit [Desulfarculus baarsii DSM
           2075]
          Length = 240

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 17/179 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+ETTG+D   D ++  GAV L        + F   + P G +    ++ +HG+T 
Sbjct: 47  FVVLDLETTGVDLARDGVVSAGAVRLRGGRVLLGQYFDEMILPQG-EVPASSITIHGLTP 105

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L      + +F +   F        +AHNA FD+ FI+  ++  +   L  +  + TL
Sbjct: 106 QRLAAGRPLAQVFDDLAGFIGAD--IVVAHNAGFDLHFIDRHMRAHHGLAL-QNLALCTL 162

Query: 128 SIARRK------HPSSRND----LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            + R            R+     L+++ +R+G+    R  H A+ D+ + + ++ +M+ 
Sbjct: 163 RLCRALLLPSDPFGVGRHKGQCRLDAIAERFGLDTPQR--HTAIGDALVTALIFQRMLA 219


>gi|56413202|ref|YP_150277.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362128|ref|YP_002141765.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127459|gb|AAV76965.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093605|emb|CAR59069.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 232

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 23/169 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RLITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +          P  P   I T+ ++
Sbjct: 59  ADKPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLS 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176
           RR  P  +    +L K   +++        H AL D ++ + + I +M 
Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMR 152


>gi|46446795|ref|YP_008160.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400436|emb|CAF23885.1| putative DNA polymerase III, epsilon chain, mutD [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 216

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 17/200 (8%)

Query: 26  IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85
           +IEI A + +      R F+ F+ P G    PE+  +H ITDE + +  SF+ + +EF +
Sbjct: 1   MIEIAAYDPVQN----RRFEKFVHP-GFPIPPESTAIHHITDEMVANAGSFADVGAEFVE 55

Query: 86  FFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNS 143
           F   +    IAHN   FD+ F+  E +R         + +D+L  ARR      R+ L  
Sbjct: 56  FCAGE-VVLIAHNNDNFDLHFLRHEFERNQLILPTHWKFLDSLKWARRYRSDLPRHTLQF 114

Query: 144 LCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNI 203
           L + YGIT ++   H AL D  +L  V+  M+          +  +        + + ++
Sbjct: 115 LREIYGITANN--AHRALDDVIVLERVFRSMV-------DDLEIQDVFDLLNRPRAIQHM 165

Query: 204 SLLKRDKPLFTRITKEELDE 223
              K       +I K  +  
Sbjct: 166 PFGKHQGQPLNKIPKNYISW 185


>gi|289550389|ref|YP_003471293.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01]
 gi|315660145|ref|ZP_07913002.1| exonuclease [Staphylococcus lugdunensis M23590]
 gi|289179921|gb|ADC87166.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01]
 gi|315494826|gb|EFU83164.1| exonuclease [Staphylococcus lugdunensis M23590]
          Length = 186

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   N    +  D ET   + K   I  +G V+++D   T  +F   + P     S + +
Sbjct: 1   MPLTNNA-FVALDFETA--NGKRTSICSVGMVKVIDNQIT-ESFHTLINPQDY-FSKKNI 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI  E +   P F  +F     F    N   +AHNA FD+  ++  L++      D 
Sbjct: 56  NVHGINPEDVIHAPQFDYVFPYMLQFIA--NLPVVAHNAAFDMNVLHQSLKQAGIITPDL 113

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                +  +A+R   + R  L  +   Y +       H AL D+   + +  +++
Sbjct: 114 -TYFCSYQLAKRTIDAPRYGLKHMMDFYNLDF--HGHHDALNDAKACAMITFRLL 165


>gi|94990039|ref|YP_598139.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS10270]
 gi|94543547|gb|ABF33595.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes
           MGAS10270]
          Length = 833

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K   +  V D+E TG       I     +   +  K   +++  + P+        +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P F  +    +     ++  ++AHN KFD   +   L     +   P
Sbjct: 72  HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 129

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DT+ +A+   P   + +L+ L ++  I ++    H A+ D+   + ++++++
Sbjct: 130 --RVDTVELAQLFFPRFEKYNLSHLSRQLNIDLA--EAHTAIADARATAILFLRLL 181


>gi|149194243|ref|ZP_01871340.1| DNA polymerase III subunit epsilon [Caminibacter mediatlanticus
           TB-2]
 gi|149135418|gb|EDM23897.1| DNA polymerase III subunit epsilon [Caminibacter mediatlanticus
           TB-2]
          Length = 248

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 8/172 (4%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           NK    + D+E      K  +IIEIGAV+L +    +  F   +    +       K+ G
Sbjct: 62  NKSEYTILDLEVNNSKPKEGQIIEIGAVKLKNLVPIDE-FSFLI--YAKDIPRYVTKVTG 118

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I ++ LK++ S   I  +F  F    ++  +AH A FD  F+  + ++ +   L  +  +
Sbjct: 119 INNQMLKNEKSQKEILEKFRLFLG--DSVIVAHAADFDFNFLAKQFEKEDLGYLL-NPHL 175

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            T+++A++   ++R  L  L +   +       H AL D+   + V++K + 
Sbjct: 176 CTITLAKKTLKANRYGLKYLKEELNLP--EEIDHRALGDARTTTRVFLKSLE 225


>gi|126665981|ref|ZP_01736961.1| ribonuclease T [Marinobacter sp. ELB17]
 gi|126629303|gb|EAZ99920.1| ribonuclease T [Marinobacter sp. ELB17]
          Length = 214

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 73/195 (37%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G +   D ++EI AV +            T+   + P  G     
Sbjct: 14  RFRGFLPVVVDVETAGFNPAKDALLEIAAVMVTMDENGFLHRGETYLQQIDPFEGANFEQ 73

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAE 109
            +L   GI      ++        SE           F+ + A  + HNA FD  F+ A 
Sbjct: 74  SSLDFTGIDPWDPEREAVPEREGLSEIFSPIRKAMKAFDCKRAVLVGHNATFDHNFVFAA 133

Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R  I ++P  P    DT ++A   +      L   CK   I    +  H A  D+   
Sbjct: 134 SERADIKRNPFHPFSTFDTATLAGLAY--GHTVLAQACKLARIPFDSKEAHSAAYDAEKT 191

Query: 168 SDVYIKMMVGGSQIN 182
           +D++  ++    ++ 
Sbjct: 192 ADLFCSIVNRWQELG 206


>gi|15674717|ref|NP_268891.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes M1 GAS]
 gi|13621839|gb|AAK33612.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes M1 GAS]
          Length = 833

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K   +  V D+E TG       I     +   +  K   +++  + P+        +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P F  +    +     ++  ++AHN KFD   +   L     +   P
Sbjct: 72  HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 129

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DT+ +A+   P   + +L+ L ++  I ++    H A+ D+   + ++++++
Sbjct: 130 --RVDTVELAQLFFPRFEKYNLSHLSRQLNIDLA--EAHTAIADARATAILFLRLL 181


>gi|71903180|ref|YP_279983.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS6180]
 gi|71802275|gb|AAX71628.1| ATP-dependent helicase [Streptococcus pyogenes MGAS6180]
          Length = 833

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K   +  V D+E TG       I     +   +  K   +++  + P+        +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P F  +    +     ++  ++AHN KFD   +   L     +   P
Sbjct: 72  HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 129

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DT+ +A+   P   + +L+ L ++  I ++    H A+ D+   + ++++++
Sbjct: 130 --RVDTVELAQLFFPRFEKYNLSHLSRQLNIDLA--EAHTAIADARATAILFLRLL 181


>gi|300717064|ref|YP_003741867.1| exodeoxyribonuclease X [Erwinia billingiae Eb661]
 gi|299062900|emb|CAX60020.1| Exodeoxyribonuclease X [Erwinia billingiae Eb661]
          Length = 221

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+E+ +V+++D    N      +CP+ R  SP A+ +H IT+  +
Sbjct: 4   VIDTETCGLQGG---IVEVASVDVIDGKIVN-PMSDLICPD-RPISPHAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP        +       +  ++AHNA FD   +          P      I T+++A
Sbjct: 59  ADKPPIEHAIGRYH-----GSPYYVAHNASFDRRML----------PEMHGEWICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITIS---HRSKHGALLDSHLLSDVYIKMM 175
           R   P  +    +L +   + ++       H AL D ++ + + I++M
Sbjct: 104 RGLWPGIKYSNQALRETLKLEVTPPADLHAHRALYDCYVTAALLIRIM 151


>gi|71910349|ref|YP_281899.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS5005]
 gi|71853131|gb|AAZ51154.1| ATP-dependent helicase [Streptococcus pyogenes MGAS5005]
          Length = 819

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K   +  V D+E TG       I     +   +  K   +++  + P+        +
Sbjct: 1   MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P F  +    +     ++  ++AHN KFD   +   L     +   P
Sbjct: 58  HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DT+ +A+   P   + +L+ L ++  I ++    H A+ D+   + ++++++
Sbjct: 116 --RVDTVELAQLFFPRFEKYNLSHLSRQLNIDLA--EAHTAIADARATAILFLRLL 167


>gi|33519827|ref|NP_878659.1| ribonuclease T [Candidatus Blochmannia floridanus]
 gi|54036331|sp|Q7VR55|RNT_BLOFL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|33504172|emb|CAD83434.1| ribonuclease T [Candidatus Blochmannia floridanus]
          Length = 223

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 78/196 (39%), Gaps = 18/196 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLC-PNGRKNSP 57
           R      +V D+ET+GL++  + ++EI  + L      +   +      +    G    P
Sbjct: 13  RFRGFYPVVIDVETSGLNASTNALLEIATITLKMNEDGWLHVDNMLHFHIKSFPGAILQP 72

Query: 58  EALKLHGIT-DEFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAE 109
           EAL L+ I  +  L+   +      E +   +          A  +AHNA FD  F+ A 
Sbjct: 73  EALALNKINPNSPLRFAVTEQEALVEIFKMVHVGIKAQQCNKAIIVAHNASFDHSFLMAA 132

Query: 110 LQRINK---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            +R N    +P  P    DT +++       +  L+  C+  GI       H AL D+  
Sbjct: 133 TERTNNIQDNPFHPFVTFDTAALSGLVF--GQTVLSKACEYAGIIFDKNKAHSALYDAEK 190

Query: 167 LSDVYIKMMVGGSQIN 182
            + ++  ++    ++ 
Sbjct: 191 TAILFCTLVNAWKKLG 206


>gi|210135714|ref|YP_002302153.1| DNA polymerase III subunit epsilon [Helicobacter pylori P12]
 gi|210133682|gb|ACJ08673.1| DNA polymerase III epsilon subunit [Helicobacter pylori P12]
          Length = 323

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 85/217 (39%), Gaps = 19/217 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 111 FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 167

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 168 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 224

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182
           +R   S R  L+ L +  G  I     H A  D+     ++   ++            I+
Sbjct: 225 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 282

Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           F    N   +       ++T P  SL +R K L   I
Sbjct: 283 FSKCANTLIKRPPRSRHQETPPPFSLFERTKGLLNII 319


>gi|317013348|gb|ADU83956.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           Lithuania75]
          Length = 287

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/217 (25%), Positives = 86/217 (39%), Gaps = 19/217 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 132 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182
           +R   S R  L+ L +  G  I     H A  D+     ++   ++            I+
Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246

Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           F    N   +       ++T P  SL +R K LF  I
Sbjct: 247 FSKCANTLIKRPPKARHQETPPPFSLFERTKGLFNII 283


>gi|21909995|ref|NP_664263.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS315]
 gi|28896308|ref|NP_802658.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes SSI-1]
 gi|21904184|gb|AAM79066.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28811559|dbj|BAC64491.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes SSI-1]
          Length = 833

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K   +  V D+E TG       I     +   +  K   +++  + P+        +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P F  +    +     ++  ++AHN KFD   +   L     +   P
Sbjct: 72  HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 129

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DT+ +A+   P   + +L+ L ++  I ++    H A+ D+   + ++++++
Sbjct: 130 --RVDTVELAQLFFPRFEKYNLSHLSRQLNIDLA--EAHTAIADARATAILFLRLL 181


>gi|57237506|ref|YP_178520.1| DNA polymerase III subunit epsilon [Campylobacter jejuni RM1221]
 gi|57166310|gb|AAW35089.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Campylobacter jejuni RM1221]
          Length = 233

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 7/147 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIE+TG  SK   I+EIGAV++ +  +  R FQ F+    ++      +L GIT E
Sbjct: 49  FCIVDIESTGGVSKG-EILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYE 104

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ PS + + S+F  F   +++ ++AHN +FD  FI+  L       L  +R I T+ 
Sbjct: 105 MVENAPSLTKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILL-NRRICTIE 161

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155
            A+    S +  L  L +  G+  +H 
Sbjct: 162 FAQCCIESPKYKLEVLKEFLGVENTHH 188


>gi|325956898|ref|YP_004292310.1| ATP-dependent DNA helicase [Lactobacillus acidophilus 30SC]
 gi|325333463|gb|ADZ07371.1| ATP-dependent DNA helicase [Lactobacillus acidophilus 30SC]
 gi|327183677|gb|AEA32124.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1118]
          Length = 926

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 9/172 (5%)

Query: 6   KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K    V D+ETTG   +    II+ G   ++   K  +T+   + P+ R+     + L G
Sbjct: 7   KDIFAVVDLETTGTQRENGHHIIQFGC-AIIKNLKVVKTYSFMINPH-REIPQSVVNLTG 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I++  ++ +  F     +       QN  ++AHN  FD+ F+N EL +   D L  ++ I
Sbjct: 65  ISNGDVQKQKDFDFYAPKIVKIL--QNTVFVAHNVDFDLPFLNYELTQHGYDAL-TNKAI 121

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+ +A+   P+     L+ L  +  I   H + H A  D++  + + IK++
Sbjct: 122 DTVELAKIAFPTLPSYKLSDLTAQLEIK--HLNPHKADSDAYGTAILLIKII 171


>gi|315038483|ref|YP_004032051.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1112]
 gi|312276616|gb|ADQ59256.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1112]
          Length = 926

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 9/172 (5%)

Query: 6   KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K    V D+ETTG   +    II+ G   ++   K  +T+   + P+ R+     + L G
Sbjct: 7   KDIFAVVDLETTGTQRENGHHIIQFGC-AIIKNLKVVKTYSFMINPH-REIPQSVVNLTG 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I++  ++ +  F     +       QN  ++AHN  FD+ F+N EL +   D L  ++ I
Sbjct: 65  ISNGDVQKQKDFDFYAPKIVKIL--QNTVFVAHNVDFDLPFLNYELTQHGYDAL-TNKAI 121

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT+ +A+   P+     L+ L  +  I   H + H A  D++  + + IK++
Sbjct: 122 DTVELAKIAFPTLPSYKLSDLTAQLEIK--HLNPHKADSDAYGTAILLIKII 171


>gi|282879820|ref|ZP_06288549.1| exonuclease [Prevotella timonensis CRIS 5C-B1]
 gi|281306330|gb|EFA98361.1| exonuclease [Prevotella timonensis CRIS 5C-B1]
          Length = 286

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 9/175 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    K   I+FD+ETTGLD  NDRII+I  +++L   +  R   +F+ P  +    E +
Sbjct: 1   MKLNLKKPLIIFDLETTGLDLVNDRIIQISYIKVLPNGEEERE-SIFVNPE-KPIPHEVI 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LD 119
           +L GIT+E + + P F  I +   + F + +      N  FDV  +  E  R   D    
Sbjct: 59  ELTGITNEDVANAPKFKEIAAHLQNQFKDSDIAGFNSN-HFDVPLLAEEFLRAGIDFDFS 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYI 172
              +ID  +I    H   R +L +  K Y G  +      H A  D+     V +
Sbjct: 118 KCNLIDVQTI---FHKMERRNLAAAYKFYCGRKMEEDFQAHKANEDAEATYRVLL 169


>gi|308183650|ref|YP_003927777.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4]
 gi|308065835|gb|ADO07727.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4]
          Length = 287

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 56/217 (25%), Positives = 86/217 (39%), Gaps = 19/217 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 132 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182
           +R   S R  L+ L +  G  I     H A  D+     ++   ++            I+
Sbjct: 189 KRTILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246

Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           F    N   +       ++T P  SL +R K LF  I
Sbjct: 247 FSKCANTLIKRPPRARHQETPPPFSLFERTKGLFNII 283


>gi|240173340|ref|ZP_04751998.1| DNA polymerase III subunit epsilon [Mycobacterium kansasii ATCC
           12478]
          Length = 329

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 87/214 (40%), Gaps = 25/214 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RII I  + L    +  ++    L P      P +  +HG+T  
Sbjct: 16  WAVIDVETSGFRPGQARIISIAVLGLDADGRVEQSLVSLLNPG---VDPGSTHIHGLTAG 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D+P F+ I  +  +    +    +AHN  FD  F+ AE +      L    ++ T+ 
Sbjct: 73  MLEDQPQFADIVGDVVELL--RGRTLVAHNVAFDYAFLAAEAEMA-GAELPVDTVMCTVE 129

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++RR      N  L +L   +G+       H A  D+ +L+ V    +            
Sbjct: 130 LSRRLELGVDNLRLETLAAHWGVI--QERPHDAFDDARVLTGVLAAALERA--------- 178

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
                 +E +  +P   + +R  P   R+T +EL
Sbjct: 179 ------REREVWLPVHPVTRRRWP-NGRVTHDEL 205


>gi|205355328|ref|ZP_03222099.1| exonuclease possibly DNA polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346562|gb|EDZ33194.1| exonuclease possibly DNA polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 233

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 7/147 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIE+TG  SK   I+EIGAV++ +  +  R FQ F+    ++      +L GIT E
Sbjct: 49  FCIVDIESTGGVSKG-EILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYE 104

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ PS + + S+F  F   +++ ++AHN +FD  FI+  L       L  +R I T+ 
Sbjct: 105 MVENAPSLTKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILL-NRRICTIE 161

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155
            A+    S +  L  L +  G+  +H 
Sbjct: 162 FAQCCIESPKYKLEVLKEFLGVENTHH 188


>gi|297380606|gb|ADI35493.1| DNA polymerase III polC-type [Helicobacter pylori v225d]
          Length = 287

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 19/217 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 132 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182
           +R   S R  L+ L +  G  I     H A  D+     ++   ++            I+
Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246

Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           F    N   +       ++T+P  SL +R K L   I
Sbjct: 247 FSKCANTLIKRPPRARHQETLPPFSLFERTKGLLNII 283


>gi|305681196|ref|ZP_07404003.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Corynebacterium matruchotii ATCC 14266]
 gi|305659401|gb|EFM48901.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Corynebacterium matruchotii ATCC 14266]
          Length = 444

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 84/212 (39%), Gaps = 13/212 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE---ALKLHGI 65
            +  D+ET   ++    I +IG V + D  + +     +LC             +++HGI
Sbjct: 101 FVGVDVETA--NADWGSICQIGVVRVTDGMQVDS--HEWLCRPPAGIDHFDEGNIRIHGI 156

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + + D P F+++F E   +  +Q    +AHNA+FD+   +         P+   +   
Sbjct: 157 TPDMVTDAPDFAAVFPEVVAYVADQ--VLVAHNAQFDLTAFSRACHATG-TPVPHWKFAC 213

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           +L+ +R      + + L  + +  G+ + +   H A+ D+   + +++++ +        
Sbjct: 214 SLAASRAAKLGITSHRLPVVAQHLGVELDNH--HDAVADARACAGIFVQLALRAHATGDI 271

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                   F         I  +  + P  T  
Sbjct: 272 ETVFTTLGFSLGDLNTERIYPVLSNPPTVTVA 303


>gi|304413849|ref|ZP_07395266.1| ribonuclease T [Candidatus Regiella insecticola LSR1]
 gi|304283569|gb|EFL91964.1| ribonuclease T [Candidatus Regiella insecticola LSR1]
          Length = 210

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 76/190 (40%), Gaps = 18/190 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE-LLDYSK---TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET+G D++ + ++EI AV   ++         T    + P  G     ++L  +
Sbjct: 19  PVVIDVETSGFDAQTNALLEIAAVTLQMNDGGWLHPAETLHFHVAPFEGAILEQKSLSFN 78

Query: 64  GIT-DEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAELQRIN- 114
           GI  D  L+   S        ++   ++        A  +AHNA FD  F+ A  +R   
Sbjct: 79  GINLDNPLRGAISEHKALQTIFETVKKRMKGEGCTRAVVVAHNATFDHRFVMAAAERTGL 138

Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              +P       DT +++       +  L   C   GI       H AL D+   + ++ 
Sbjct: 139 IKHNPFHSFVTFDTAALSALVL--GQTVLAKACLEAGIDFESSQAHSALYDTKQTAKLFC 196

Query: 173 KMMVGGSQIN 182
           +++    ++ 
Sbjct: 197 ELVNRWKRLG 206


>gi|260887789|ref|ZP_05899052.1| exonuclease [Selenomonas sputigena ATCC 35185]
 gi|260862465|gb|EEX76965.1| exonuclease [Selenomonas sputigena ATCC 35185]
          Length = 202

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 12/168 (7%)

Query: 7   MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M  I  D ET TG     +    +  VE+ D       +   + P G +     + +HGI
Sbjct: 18  MNYIAIDFETATG---SMNSACSVATVEVRDGQL-KEGWTTLIQPPGLRFDSFNIGIHGI 73

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + + D P+F+ ++ E  +         +AHNA FD+G + A L   N+      R   
Sbjct: 74  SPKDVTDAPTFAEVWEELKERLA--GKIVVAHNASFDMGVLKASLL-ANRLQAPYFRTCC 130

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           T+ IAR+  P+   + LN++     I   H   H AL D+   + + +
Sbjct: 131 TVRIARKVWPALDDHKLNTVGAHLNINFRH---HRALDDARTCAAILL 175


>gi|255974861|ref|ZP_05425447.1| exonuclease [Enterococcus faecalis T2]
 gi|256763360|ref|ZP_05503940.1| exonuclease [Enterococcus faecalis T3]
 gi|255967733|gb|EET98355.1| exonuclease [Enterococcus faecalis T2]
 gi|256684611|gb|EEU24306.1| exonuclease [Enterococcus faecalis T3]
          Length = 183

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 20/184 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA---LKLH 63
           M    FD ET            I  V++ +    +  F   + P      P      ++H
Sbjct: 7   MNFYAFDFETA--SYDKHSACSIAIVKVENSRIVDE-FYTLIKPET----PFFWRNTQIH 59

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI +  + + P F  ++ +      + N   +AHNA FD   +   L     +       
Sbjct: 60  GIHESDVVNAPKFPEVWQQI-QHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQ-PNYLS 117

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + T+  +R+  P    + LN++C+   IT+++   H AL DS   +++ +       +  
Sbjct: 118 LCTVKTSRKLFPEFPNHKLNTVCENLNITLNNH--HDALEDSRACAEILL-----QQEQR 170

Query: 183 FGFK 186
           FG +
Sbjct: 171 FGVE 174


>gi|315038988|ref|YP_004032556.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112]
 gi|325957414|ref|YP_004292826.1| DNA polymerase III [Lactobacillus acidophilus 30SC]
 gi|312277121|gb|ADQ59761.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112]
 gi|325333979|gb|ADZ07887.1| DNA polymerase III [Lactobacillus acidophilus 30SC]
 gi|327184122|gb|AEA32569.1| DNA polymerase III [Lactobacillus amylovorus GRL 1118]
          Length = 318

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 7/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTGL    DRI E+GAV++ +    ++   +   P   K      KL+GIT+E
Sbjct: 33  YTMLDIETTGLSPYRDRITELGAVKVRNGQIVDQYTNLIKFPKNNKVPAFITKLNGITEE 92

Query: 69  F-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + +         EF +F ++     I +N  FD+ F+    Q+    P+  +  +D L
Sbjct: 93  QIVNEGIPAEQAIKEFREFIDDD--IIIGYNVNFDLNFLYDLSQKYKL-PILNNDYVDVL 149

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +AR  +P  R++ L    +R GI  +   +H  L DS     VY
Sbjct: 150 RLARAYYPRERHNRLIDCMQRAGI--AQVEEHHGLADSLDTIKVY 192


>gi|124516571|gb|EAY58079.1| DNA polymerase III, epsilon subunit [Leptospirillum rubarum]
          Length = 265

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 11/173 (6%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64
           M+    D+ETTGL      RIIE+G     +     +T    +   G    P+   K++G
Sbjct: 1   MKVTFLDVETTGLLRDSRARIIELGFSSWENGKLLRKT-STLIK--GADIVPDNISKING 57

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT E LKD P F  ++       + Q +  +AHN  FDVG +N EL   ++ PL  +  I
Sbjct: 58  ITTEMLKDAPRFEEVWKSIKG--DIQGSLLVAHNLAFDVGMVNRELILADRIPLG-NMGI 114

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           DTL ++R+  P  S   L  + K  GI   +   H A+ D   L  +   ++ 
Sbjct: 115 DTLPLSRKMLPELSSYRLGEIAKHMGILNEN--PHRAMGDLETLEKIVSNLLG 165


>gi|188997445|ref|YP_001931696.1| Exonuclease RNase T and DNA polymerase III [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188932512|gb|ACD67142.1| Exonuclease RNase T and DNA polymerase III [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 203

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 7/170 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            + FD ETTGL+ K D I+ I AV++ D     N  F V + P+ R+ + + +K+HG+  
Sbjct: 34  YVAFDTETTGLNPKVDDILSIAAVKIKDNKILLNERFNVIVKPD-REINEDVIKIHGLRK 92

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDT 126
           + L+           F  F   +    + +  +FDV  IN   ++++   L   +I +  
Sbjct: 93  KDLESGIPIEEAVDRFVHFIGSR--PLVGYYLEFDVAMINKYFKKLSGTTLPNKQIEVSA 150

Query: 127 LSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L    +    P    DL        + I    KH AL D+ + + +++K+
Sbjct: 151 LYYDYKIGLIPQGFVDLRFDSILKDLDIPTFGKHDALNDAIMTALIFLKL 200


>gi|330838686|ref|YP_004413266.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena
           ATCC 35185]
 gi|329746450|gb|AEB99806.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena
           ATCC 35185]
          Length = 186

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 12/168 (7%)

Query: 7   MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M  I  D ET TG     +    +  VE+ D       +   + P G +     + +HGI
Sbjct: 2   MNYIAIDFETATG---SMNSACSVATVEVRDGQL-KEGWTTLIQPPGLRFDSFNIGIHGI 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + + D P+F+ ++ E  +         +AHNA FD+G + A L   N+      R   
Sbjct: 58  SPKDVTDAPTFAEVWEELKERLA--GKIVVAHNASFDMGVLKASLL-ANRLQAPYFRTCC 114

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           T+ IAR+  P+   + LN++     I   H   H AL D+   + + +
Sbjct: 115 TVRIARKVWPALDDHKLNTVGAHLNINFRH---HRALDDARTCAAILL 159


>gi|326800451|ref|YP_004318270.1| exonuclease RNase T and DNA polymerase III [Sphingobacterium sp.
           21]
 gi|326551215|gb|ADZ79600.1| Exonuclease RNase T and DNA polymerase III [Sphingobacterium sp.
           21]
          Length = 330

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 11/223 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           MI   K     FD+ETTG++  +DRI+EI  ++ + D S+  +T +  + P        +
Sbjct: 1   MILNLKRPLAFFDLETTGVNVASDRIVEISILKAMPDGSEQVKTMR--INPE-MPIPLSS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPL 118
             LHG+ DE +KD P+F  +  E  DF   ++ +   +N+  FD+  +  E  R   +  
Sbjct: 58  SLLHGVYDEDIKDAPTFKQVAQEIADFL--EDTDLAGYNSNKFDIPVLMEEFLRAGINFD 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +R    + +    H   +  L +  K Y    +  + H A  D     +V +  +   
Sbjct: 116 IENRKF--VDVQNIFHQMEQRTLKAAYKFY-CDRTLENAHSAEADVRATYEVLLAQVQRY 172

Query: 179 SQINFGFKT-NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
             + +  K+ N+    K +   +   + L R      RI  +E
Sbjct: 173 DGVEWEDKSGNKSIPVKNDVDALHRFTNLNRPVDFAGRIIYDE 215


>gi|297559415|ref|YP_003678389.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296843863|gb|ADH65883.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 339

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 10/217 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +R   +   V D+ETTGL+ +   RI+EI  V +    K    F   + P          
Sbjct: 16  MRAADLEYAVLDMETTGLEPREGARIVEIAVVRVRGDGKFVEEFSTLIDPRA---PVGGR 72

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           + HGI +      P+ + +     +  +   A  + HN  F+  F+ +EL          
Sbjct: 73  EFHGIGEGDTVGAPTAAQVVPRLTELLS--GAVVVGHNLDFEQRFLASELVPAGLP--TG 128

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG-S 179
              + TL   R +    R  L     R          H AL D+   + +  +M+     
Sbjct: 129 QAGLCTLRALRSQVELERYSLPKASHRLSGDWPTGQ-HTALGDARACAKLLAEMLTNAPG 187

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           ++ +G    +     +        +   R KP  + +
Sbjct: 188 ELRYGGPAPKRLTVPDPVPGPVGAAGPVRWKPRTSSV 224


>gi|239631428|ref|ZP_04674459.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525893|gb|EEQ64894.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 931

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 10/177 (5%)

Query: 1   MIRKN-KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M + N +    V D+ETTG   K  DR+I+ G   L+ + K  +T    + P+ R     
Sbjct: 1   MFKMNAETIFAVVDLETTGTSVKDGDRMIQFGC-ALMQHGKIIQTISQLVNPD-RSVPVA 58

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             +L G+    L   P F  I           +  ++AHN  FD  F+NAE +R+    L
Sbjct: 59  IQRLTGLDPNRLVAAPYFEEIAKTLHQLL--TDTVFVAHNVNFDYPFLNAEFERVGLPKL 116

Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +  IDT+ +A+   P  S   L  L     I   H + H A  D+   + +  ++
Sbjct: 117 QLAA-IDTVELAQILLPEISSFRLPDLTSYLQIE--HDNPHQADSDAISTAKLLRQL 170


>gi|261840222|gb|ACX99987.1| DNA polymerase III subunit epsilon [Helicobacter pylori 52]
          Length = 323

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 19/217 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 111 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYITELTGIAYEDT 167

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 168 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 224

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182
           +R   S R  L+ L +  G  I     H A  D+     ++   ++            I+
Sbjct: 225 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 282

Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           F    N   +       ++T+    L +R K LF  I
Sbjct: 283 FSKCANTLIKRPPRARHQETLAPFPLFERTKGLFNII 319


>gi|256421379|ref|YP_003122032.1| exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis
           DSM 2588]
 gi|256036287|gb|ACU59831.1| Exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis
           DSM 2588]
          Length = 257

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 12/188 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLH 63
           K    V D+ETTG +   DRIIEI  +++      +++ Q  +     G    P +  +H
Sbjct: 7   KRPLAVIDLETTGTNVATDRIIEIAIIKVF----PDKSVQTKVKRIHPGMPIPPASTAIH 62

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSR 122
           GI+DE +KD P+F    +E   +   +N +   +N  +FD+  +  E  R   D     R
Sbjct: 63  GISDEDIKDCPTFKQCANELRQYM--ENCDLAGYNSNRFDIPLLVEEFLRAGLDFDTKDR 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
               + + +  H   +  L++  K Y       + H A  D+    ++    +    Q+ 
Sbjct: 121 RF--IDVQKIFHLMEKRTLSAAYKFY-CDKDLTNAHSAEADALATYEILEAQLSRYEQLQ 177

Query: 183 FGFKTNED 190
                  +
Sbjct: 178 AEVAPLAE 185


>gi|300727971|ref|ZP_07061349.1| exonuclease [Prevotella bryantii B14]
 gi|299774813|gb|EFI71427.1| exonuclease [Prevotella bryantii B14]
          Length = 279

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 12/176 (6%)

Query: 2   IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  +  I+FD+ETTGLD  NDRII+I  ++++   +  R     + P  +       
Sbjct: 1   MKLNLTKPLIIFDLETTGLDMVNDRIIQISYIKVMPNGEEKRG-DELVNPE-KPIPAFVS 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
            L GIT+E +K+ P+F  I ++  D F  +  ++   N  +FD+  +  E  R   D   
Sbjct: 59  DLTGITNEQVKNAPTFKEIGTKLADIF--KGCDFAGFNSNRFDIPLLCEEFLRAGIDFDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYI 172
              R+ID  +I    H   + +L +  K Y G  +      H A  D+     V  
Sbjct: 117 SKCRLIDAQTI---FHKMEKRNLAAAYKFYTGHKMEDDFEAHRADQDTEATYRVLQ 169


>gi|308234071|ref|ZP_07664808.1| DNA polymerase III, epsilon subunit [Atopobium vaginae DSM 15829]
          Length = 1008

 Score =  124 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 12/170 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL  KND++ +I AV+L + S     F  F+ P+ R       KL  I   
Sbjct: 50  IVALDTETTGLSHKNDQLTQIAAVKLEEGS-VADEFTTFVNPS-RPIPHNIEKLTNIYSV 107

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+  +  +   DF        +AHNA FD  FI A       D       IDTL+
Sbjct: 108 DVEHAPTPQTAVARLADFVELD--PILAHNASFDRAFIEA----AQNDTCVSDTWIDTLA 161

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           ++R   P+ + + L  L   +G        H A  D   L+ V+  ++ G
Sbjct: 162 LSRIAFPALTSHKLQDLAYIFGCE---SVTHRANDDCTALAGVWHYILAG 208


>gi|257867351|ref|ZP_05647004.1| exonuclease [Enterococcus casseliflavus EC30]
 gi|257873684|ref|ZP_05653337.1| exonuclease [Enterococcus casseliflavus EC10]
 gi|257877427|ref|ZP_05657080.1| exonuclease [Enterococcus casseliflavus EC20]
 gi|257801407|gb|EEV30337.1| exonuclease [Enterococcus casseliflavus EC30]
 gi|257807848|gb|EEV36670.1| exonuclease [Enterococcus casseliflavus EC10]
 gi|257811593|gb|EEV40413.1| exonuclease [Enterococcus casseliflavus EC20]
          Length = 180

 Score =  124 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 74/168 (44%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + +      +  V + D       +   + P       + +++HGI 
Sbjct: 4   MNFIAMDFETA--NYQKHSACSLALVMVQDSKIVGE-YYTLIQPETEFF-WKNIQIHGIR 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +++ P F  ++ +   ++ + N+  +AHNA FD G +   L             + T
Sbjct: 60  PEDVQEAPKFPDVWKQIQQYY-QLNSLIVAHNAGFDTGVLAGCLDYYGLSQ-PNYLSLCT 117

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +  +R+ +P  + + LN++C++  I + +   H AL DS   + + ++
Sbjct: 118 VRTSRKLYPEFTNHKLNTVCEQLQIPLLNH--HDALEDSRACAQILLR 163


>gi|328943468|ref|ZP_08240933.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829]
 gi|327491437|gb|EGF23211.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829]
          Length = 1011

 Score =  124 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 12/170 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL  KND++ +I AV+L + S     F  F+ P+ R       KL  I   
Sbjct: 53  IVALDTETTGLSHKNDQLTQIAAVKLEEGS-VADEFTTFVNPS-RPIPHNIEKLTNIYSV 110

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+  +  +   DF        +AHNA FD  FI A       D       IDTL+
Sbjct: 111 DVEHAPTPQTAVARLADFVELD--PILAHNASFDRAFIEA----AQNDTCVSDTWIDTLA 164

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           ++R   P+ + + L  L   +G        H A  D   L+ V+  ++ G
Sbjct: 165 LSRIAFPALTSHKLQDLAYIFGCE---SVTHRANDDCTALAGVWHYILAG 211


>gi|259046854|ref|ZP_05737255.1| DnaQ family exonuclease/DinG family helicase [Granulicatella
           adiacens ATCC 49175]
 gi|259036477|gb|EEW37732.1| DnaQ family exonuclease/DinG family helicase [Granulicatella
           adiacens ATCC 49175]
          Length = 875

 Score =  124 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 11/185 (5%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +  V D+ETTG   +  DRI + G   + D+ K      + + P  +    E   L G+T
Sbjct: 4   KYAVIDLETTGPKYEQGDRIFQFGCTLITDH-KIVEHITLNINPE-QSIPFEIQLLTGVT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++  P F  +    ++    +    +AHN  FD  FI   L+      L+    IDT
Sbjct: 62  NADVEKAPYFDEVAMNIYNLL--EGRTLVAHNVGFDGPFIITALKEALGIELEV-PFIDT 118

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           + +A+  +PS+    L+ L     I   H   H A  D+   + ++  +++     +F  
Sbjct: 119 VQLAQICYPSAISYRLSDLTNMLKIP--HTQVHTAGSDARATAQLF--LILQEKIRSFSK 174

Query: 186 KTNED 190
            T E 
Sbjct: 175 VTLEQ 179


>gi|86142317|ref|ZP_01060827.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella
           blandensis MED217]
 gi|85831069|gb|EAQ49526.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella
           blandensis MED217]
          Length = 257

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 9/172 (5%)

Query: 2   IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +  N  R I  FD+ETTG++   DRI+EI  +++L   K  +    +L        PE  
Sbjct: 1   MNLNLTRPICFFDLETTGINVAKDRIVEISVLKVLPNGKEEK--HTWLVNPTIPIPPETT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI DE + DKP+F  + +E  +   + +      N +FD+  +  E+ R   D    
Sbjct: 59  AVHGIKDEDVADKPTFKELANEIHNLIKDSDLAGFNSN-RFDIPLLAEEMLRAEVDFDMK 117

Query: 121 SRI-IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +R  ID  +I    H   +  L++  K Y    +    H A  D+    +V 
Sbjct: 118 NRNAIDVQTI---FHKMEQRTLSAAYKFY-CDQTLEDAHSAEADTIATYEVL 165


>gi|319938082|ref|ZP_08012482.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1]
 gi|319806988|gb|EFW03627.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1]
          Length = 221

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 14/173 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I++D+ETTGL +K D IIEIGA+ + D +  + +F     P G   +   +++ GIT++
Sbjct: 40  YIMYDLETTGLTNK-DHIIEIGAIYVEDNTIVD-SFSALCNP-GIFITQRIVEITGITNK 96

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEW-IAHN-AKFDVGFINAELQRINKDPLDPSRIIDT 126
            L DKP    +  +F ++ N +     +  N   FD   +    +R   +     R +DT
Sbjct: 97  MLSDKPPEYDVVKQFVEWCNSKETSLAVGQNINSFDNRMLKVATKRFKLN-FPFERSLDT 155

Query: 127 LSIARRKHPSSR-----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L +A       +     N  + L K YGI       H A+ D   L  ++  +
Sbjct: 156 LKMAINMKLKEKGLVASNQQSDLGKLYGIEY---VAHRAINDVEALYQIFEHL 205


>gi|239638049|ref|ZP_04679008.1| exonuclease [Staphylococcus warneri L37603]
 gi|239596332|gb|EEQ78870.1| exonuclease [Staphylococcus warneri L37603]
          Length = 184

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V+++D   T  TF   + PN    S + + +HGI  E
Sbjct: 6   FVALDFETA--NGKRTSICSVGMVKVIDNQIT-ETFHTLVNPNDY-FSEQNINVHGIYPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+FS +F     F ++     +AHNA FD+  ++  +Q I  +         +  
Sbjct: 62  DVASSPNFSYVFPYMMQFIDQ--LPVVAHNAAFDMNVLHQSIQDIGLET-PHLTYFCSYQ 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+R   S R  L  +   Y +       H AL D+   + +  +++
Sbjct: 119 LAKRTVQSHRYGLKHMMDFYQLDF--HGHHDALNDAKACAMITYRLL 163


>gi|308234672|ref|ZP_07665409.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis ATCC
           14018]
 gi|311114561|ref|YP_003985782.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Gardnerella vaginalis ATCC 14019]
 gi|310946055|gb|ADP38759.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Gardnerella vaginalis ATCC 14019]
          Length = 359

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 83/195 (42%), Gaps = 20/195 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC---------PNG 52
           I K     +V D ETTGL+SK D+IIEIGAV+ +D       FQ  +             
Sbjct: 171 IGKTSKNFVVIDCETTGLNSKVDKIIEIGAVKFIDGKI--EEFQKLININCDSVSNFNKN 228

Query: 53  RKNSPEALKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
                E ++L GIT   L+           EF DF  +     + +N  FD+GF N+ L 
Sbjct: 229 NFIPNEIIELTGITSNMLESYGVGLDLALREFIDFVGK--LPLLGYNVSFDIGFFNSALF 286

Query: 112 RINKD---PLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLL 167
            +++        +++ID     +      +N  L ++   Y I  S    H ALLD+ L 
Sbjct: 287 SLDEKLSSAFSVNKVIDISRFVKHDRRFLKNYQLKTVLHEYNI--SESVPHRALLDARLT 344

Query: 168 SDVYIKMMVGGSQIN 182
           + + + +      ++
Sbjct: 345 ARLVLNLTELLKFLS 359


>gi|29377213|ref|NP_816367.1| exonuclease [Enterococcus faecalis V583]
 gi|227554221|ref|ZP_03984268.1| DNA-directed DNA polymerase III [Enterococcus faecalis HH22]
 gi|229549147|ref|ZP_04437872.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 29200]
 gi|255971865|ref|ZP_05422451.1| exonuclease [Enterococcus faecalis T1]
 gi|256957963|ref|ZP_05562134.1| exonuclease [Enterococcus faecalis DS5]
 gi|256961017|ref|ZP_05565188.1| exonuclease [Enterococcus faecalis Merz96]
 gi|257079901|ref|ZP_05574262.1| exonuclease [Enterococcus faecalis JH1]
 gi|257087703|ref|ZP_05582064.1| exonuclease [Enterococcus faecalis D6]
 gi|293384593|ref|ZP_06630459.1| exonuclease [Enterococcus faecalis R712]
 gi|293386822|ref|ZP_06631393.1| exonuclease [Enterococcus faecalis S613]
 gi|294779917|ref|ZP_06745299.1| exonuclease [Enterococcus faecalis PC1.1]
 gi|300861254|ref|ZP_07107341.1| exonuclease [Enterococcus faecalis TUSoD Ef11]
 gi|307269234|ref|ZP_07550588.1| exonuclease [Enterococcus faecalis TX4248]
 gi|307276973|ref|ZP_07558083.1| exonuclease [Enterococcus faecalis TX2134]
 gi|312906419|ref|ZP_07765427.1| exonuclease [Enterococcus faecalis DAPTO 512]
 gi|312951911|ref|ZP_07770799.1| exonuclease [Enterococcus faecalis TX0102]
 gi|312979422|ref|ZP_07791110.1| exonuclease [Enterococcus faecalis DAPTO 516]
 gi|29344679|gb|AAO82437.1| exonuclease [Enterococcus faecalis V583]
 gi|227176668|gb|EEI57640.1| DNA-directed DNA polymerase III [Enterococcus faecalis HH22]
 gi|229305701|gb|EEN71697.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 29200]
 gi|255962883|gb|EET95359.1| exonuclease [Enterococcus faecalis T1]
 gi|256948459|gb|EEU65091.1| exonuclease [Enterococcus faecalis DS5]
 gi|256951513|gb|EEU68145.1| exonuclease [Enterococcus faecalis Merz96]
 gi|256987931|gb|EEU75233.1| exonuclease [Enterococcus faecalis JH1]
 gi|256995733|gb|EEU83035.1| exonuclease [Enterococcus faecalis D6]
 gi|291078139|gb|EFE15503.1| exonuclease [Enterococcus faecalis R712]
 gi|291083825|gb|EFE20788.1| exonuclease [Enterococcus faecalis S613]
 gi|294453029|gb|EFG21449.1| exonuclease [Enterococcus faecalis PC1.1]
 gi|295113676|emb|CBL32313.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Enterococcus sp. 7L76]
 gi|300850293|gb|EFK78043.1| exonuclease [Enterococcus faecalis TUSoD Ef11]
 gi|306506396|gb|EFM75556.1| exonuclease [Enterococcus faecalis TX2134]
 gi|306514453|gb|EFM83014.1| exonuclease [Enterococcus faecalis TX4248]
 gi|310627573|gb|EFQ10856.1| exonuclease [Enterococcus faecalis DAPTO 512]
 gi|310630100|gb|EFQ13383.1| exonuclease [Enterococcus faecalis TX0102]
 gi|311287793|gb|EFQ66349.1| exonuclease [Enterococcus faecalis DAPTO 516]
 gi|315025497|gb|EFT37429.1| exonuclease [Enterococcus faecalis TX2137]
 gi|315035108|gb|EFT47040.1| exonuclease [Enterococcus faecalis TX0027]
 gi|315154299|gb|EFT98315.1| exonuclease [Enterococcus faecalis TX0031]
 gi|315159608|gb|EFU03625.1| exonuclease [Enterococcus faecalis TX0312]
 gi|315162098|gb|EFU06115.1| exonuclease [Enterococcus faecalis TX0645]
 gi|315573774|gb|EFU85965.1| exonuclease [Enterococcus faecalis TX0309B]
 gi|315580288|gb|EFU92479.1| exonuclease [Enterococcus faecalis TX0309A]
 gi|323481659|gb|ADX81098.1| DNA polymerase III, epsilon subunit, 3'-5' exonuclease family
           protein [Enterococcus faecalis 62]
 gi|329578017|gb|EGG59432.1| exonuclease [Enterococcus faecalis TX1467]
          Length = 177

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 20/184 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA---LKLH 63
           M    FD ET            I  V++ +    +  F   + P      P      ++H
Sbjct: 1   MNFYAFDFETA--SYDKHSACSIAIVKVENSRIVDE-FYTLIKPET----PFFWRNTQIH 53

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI +  + + P F  ++ +      + N   +AHNA FD   +   L     +       
Sbjct: 54  GIHESDVVNAPKFPEVWQQI-QHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQ-PNYLS 111

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + T+  +R+  P    + LN++C+   IT+++   H AL DS   +++ +       +  
Sbjct: 112 LCTVKTSRKLFPEFPNHKLNTVCENLNITLNNH--HDALEDSRACAEILL-----QQEQR 164

Query: 183 FGFK 186
           FG +
Sbjct: 165 FGVE 168


>gi|255021102|ref|ZP_05293155.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
 gi|254969516|gb|EET27025.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
          Length = 475

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 10/174 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M ++        D+E TG   + DRIIE+G + +    +    +   + P  R  SP   
Sbjct: 1   MAQELDTTLAFIDLENTGGHLERDRIIEVGIILVAPAGEP-EVWSTLINPEIR-LSPAIS 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GI    L   P+F+ +     +    +    IAH+A+ D+ F+  E +R+ +  +  
Sbjct: 59  TLTGIDPADLAHAPTFAQVAEPLREKLAGR--LLIAHDARTDLAFLRQEWRRLGQ--VFT 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + ++ TL ++R   P   R+ L+++ +R  +  + R  H AL D+     +++ 
Sbjct: 115 ADVLCTLRLSRSLFPDEKRHGLDAIIERLQLHSAGR--HRALTDAR-TVAIFLA 165


>gi|271970236|ref|YP_003344432.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270513411|gb|ACZ91689.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 189

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 11/144 (7%)

Query: 12  FDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D+ETTG    K DRI EI  V L     T   +   + P        A+ +HGIT+  +
Sbjct: 2   VDVETTGFSPAKGDRICEIALVSLDADGTTVDEWHSLVDPRRGT---GAVHVHGITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P    +  E W     +    +AHN  FD+ F+     ++       +  + T  +A
Sbjct: 59  EGAPVIEEVLDEVWQRIAGR--VLVAHNVSFDLRFL-----KVLPGSHWLTEALCTQQLA 111

Query: 131 RRKHPSSRNDLNSLCKRYGITISH 154
               P  +  L + C+R GI  S+
Sbjct: 112 PDLIPGGKWTLGACCQRAGIPFSN 135


>gi|149196822|ref|ZP_01873875.1| exonuclease [Lentisphaera araneosa HTCC2155]
 gi|149139932|gb|EDM28332.1| exonuclease [Lentisphaera araneosa HTCC2155]
          Length = 261

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 9/172 (5%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  R IVF D+ETTGL+   DRIIEI  +++    K +   +  + P  +  S EA 
Sbjct: 1   MKLNLQRPIVFFDLETTGLNPTEDRIIEICCIKVHPDGKRDIKTRR-VNPE-KPISSEAS 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLD 119
           ++ GITDE +KD+P+F  +    + FF  +  +   +N  +FD+  +  E +R       
Sbjct: 59  EITGITDEDVKDEPTFKQMAKGIYKFF--EGCDISGYNIMRFDLRVLTEEFKRAGISF-- 114

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +   D + + R  H      L +  + Y         H A  D     DV 
Sbjct: 115 DASAHDLVDVQRIFHKKEPRTLEAALRFY-CKKDLEGAHAAENDVIATIDVL 165


>gi|227535024|ref|ZP_03965073.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187339|gb|EEI67406.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 931

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 10/177 (5%)

Query: 1   MIRKN-KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M + N +    V D+ETTG   K  DR+I+ G   L+ + K  +T    + P+ R     
Sbjct: 1   MFKMNAETIFAVVDLETTGTSVKDGDRMIQFGC-ALMQHGKIIQTISQLVNPD-RSVPVA 58

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             +L G+    L   P F  I           +  ++AHN  FD  F+NAE +R+    L
Sbjct: 59  IQRLTGLDPNRLVAAPYFEEIAKTLHQLL--TDTVFVAHNVNFDYPFLNAEFERVGLPKL 116

Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +  IDT+ +A+   P  S   L  L     I   H + H A  D+   + +  ++
Sbjct: 117 QLAA-IDTVELAQILLPEISSFRLPDLTSYLQIE--HDNPHQADSDAISTAKLLRQL 170


>gi|227550322|ref|ZP_03980371.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330]
 gi|227180544|gb|EEI61516.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330]
          Length = 201

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 9/168 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +M  +  D ET      +     +  V + +    +  F   + P         +++HGI
Sbjct: 24  EMNFVAMDFETANHQPYSA--CSLALVMVKNSQIVDE-FYTLIQPET-PFFWRNVQIHGI 79

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E +++ P F  ++     +F ++N   +AHNA FD   +   L   + +       + 
Sbjct: 80  HQEDVRNAPKFPEVWQTIQPYF-QKNLLVVAHNAAFDTKVLAGCLDYYHLEQ-PNYLSLC 137

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           T+  +RR  P    + LN++C+   I + H   H AL DS   +++ +
Sbjct: 138 TVKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 183


>gi|257090922|ref|ZP_05585283.1| exonuclease [Enterococcus faecalis CH188]
 gi|312902561|ref|ZP_07761767.1| exonuclease [Enterococcus faecalis TX0635]
 gi|256999734|gb|EEU86254.1| exonuclease [Enterococcus faecalis CH188]
 gi|310634231|gb|EFQ17514.1| exonuclease [Enterococcus faecalis TX0635]
 gi|315168719|gb|EFU12736.1| exonuclease [Enterococcus faecalis TX1341]
 gi|315579629|gb|EFU91820.1| exonuclease [Enterococcus faecalis TX0630]
          Length = 188

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 20/184 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA---LKLH 63
           M    FD ET            I  V++ +    +  F   + P      P      ++H
Sbjct: 12  MNFYAFDFETA--SYDKHSACSIAIVKVENSQIVDE-FYTLIKPET----PFFWRNTQIH 64

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI +  + + P F  ++ +      + N   +AHNA FD   +   L     +       
Sbjct: 65  GIHESDVVNAPKFPEVWQQI-QHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQ-PNYLS 122

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + T+  +R+  P    + LN++C+   IT+++   H AL DS   +++ +       +  
Sbjct: 123 LCTVKTSRKLFPEFPNHKLNTVCENLNITLNNH--HDALEDSRACAEILL-----QQEQR 175

Query: 183 FGFK 186
           FG +
Sbjct: 176 FGVE 179


>gi|229544880|ref|ZP_04433605.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX1322]
 gi|256616762|ref|ZP_05473608.1| exonuclease [Enterococcus faecalis ATCC 4200]
 gi|256854034|ref|ZP_05559399.1| exonuclease [Enterococcus faecalis T8]
 gi|256963842|ref|ZP_05568013.1| exonuclease [Enterococcus faecalis HIP11704]
 gi|257081701|ref|ZP_05576062.1| exonuclease [Enterococcus faecalis E1Sol]
 gi|257420127|ref|ZP_05597121.1| exonuclease [Enterococcus faecalis T11]
 gi|307271788|ref|ZP_07553059.1| exonuclease [Enterococcus faecalis TX0855]
 gi|307278717|ref|ZP_07559784.1| exonuclease [Enterococcus faecalis TX0860]
 gi|307290260|ref|ZP_07570176.1| exonuclease [Enterococcus faecalis TX0411]
 gi|312900097|ref|ZP_07759413.1| exonuclease [Enterococcus faecalis TX0470]
 gi|229309981|gb|EEN75968.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX1322]
 gi|256596289|gb|EEU15465.1| exonuclease [Enterococcus faecalis ATCC 4200]
 gi|256710977|gb|EEU26020.1| exonuclease [Enterococcus faecalis T8]
 gi|256954338|gb|EEU70970.1| exonuclease [Enterococcus faecalis HIP11704]
 gi|256989731|gb|EEU77033.1| exonuclease [Enterococcus faecalis E1Sol]
 gi|257161955|gb|EEU91915.1| exonuclease [Enterococcus faecalis T11]
 gi|306498681|gb|EFM68182.1| exonuclease [Enterococcus faecalis TX0411]
 gi|306504578|gb|EFM73781.1| exonuclease [Enterococcus faecalis TX0860]
 gi|306511666|gb|EFM80665.1| exonuclease [Enterococcus faecalis TX0855]
 gi|311292732|gb|EFQ71288.1| exonuclease [Enterococcus faecalis TX0470]
 gi|315030443|gb|EFT42375.1| exonuclease [Enterococcus faecalis TX4000]
 gi|315032587|gb|EFT44519.1| exonuclease [Enterococcus faecalis TX0017]
 gi|315143870|gb|EFT87886.1| exonuclease [Enterococcus faecalis TX2141]
 gi|315148698|gb|EFT92714.1| exonuclease [Enterococcus faecalis TX4244]
 gi|315151771|gb|EFT95787.1| exonuclease [Enterococcus faecalis TX0012]
 gi|315170466|gb|EFU14483.1| exonuclease [Enterococcus faecalis TX1342]
 gi|315174930|gb|EFU18947.1| exonuclease [Enterococcus faecalis TX1346]
 gi|327535953|gb|AEA94787.1| exonuclease [Enterococcus faecalis OG1RF]
          Length = 188

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 20/184 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA---LKLH 63
           M    FD ET            I  V++ +    +  F   + P      P      ++H
Sbjct: 12  MNFYAFDFETA--SYDKHSACSIAIVKVENSRIVDE-FYTLIKPET----PFFWRNTQIH 64

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI +  + + P F  ++ +      + N   +AHNA FD   +   L     +       
Sbjct: 65  GIHESDVVNAPKFPEVWQQI-QHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQ-PNYLS 122

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           + T+  +R+  P    + LN++C+   IT+++   H AL DS   +++ +       +  
Sbjct: 123 LCTVKTSRKLFPEFPNHKLNTVCENLNITLNNH--HDALEDSRACAEILL-----QQEQR 175

Query: 183 FGFK 186
           FG +
Sbjct: 176 FGVE 179


>gi|237755791|ref|ZP_04584393.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692054|gb|EEP61060.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 203

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 9/171 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            + FD ETTGL+ K D I+ I AV++ D     N  F V + P+ R+   +A+K+HG+  
Sbjct: 34  YVAFDTETTGLNPKVDDILSIAAVKIKDNKILLNERFNVIVRPD-REIIEDAIKIHGLRK 92

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L+           F  F   +    + +  +FDV  +N   ++++   L P++ I+  
Sbjct: 93  KDLESGIPIEEAVDRFAHFIGSR--PLVGYYLEFDVAMVNKYFKKLSGTTL-PNKQIEVS 149

Query: 128 SIARR----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++         P    DL        + I    KH AL D+ + + +++K+
Sbjct: 150 ALYYDFKIGLIPQGFVDLRFDSILKDLDIPTFGKHDALNDAIMTALIFLKL 200


>gi|193076779|gb|ABO11496.2| ribonuclease T [Acinetobacter baumannii ATCC 17978]
          Length = 220

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 79/191 (41%), Gaps = 20/191 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G +++ D ++EI  + ++            F   + P  G     
Sbjct: 17  RFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYNAQGQFVPGPAFHAHINPFEGANLDR 76

Query: 58  EALKLHGITD------EFLKD-KPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107
            +L   GI           +D + +   IF    +   +Q+      + HNA FD+GF+ 
Sbjct: 77  RSLDFIGIDPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFLQ 136

Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A + R     ++P     ++DT++++       +  L   C + GI    +  H AL D+
Sbjct: 137 AAIARSGTKNQNPFHSFSVMDTVTLSAVMF--GQTVLAKACIQAGIEFDGKEAHSALYDT 194

Query: 165 HLLSDVYIKMM 175
              ++++  ++
Sbjct: 195 QKTAELFCYIL 205


>gi|301066539|ref|YP_003788562.1| Rad3-like DNA helicase [Lactobacillus casei str. Zhang]
 gi|300438946|gb|ADK18712.1| Rad3-related DNA helicase [Lactobacillus casei str. Zhang]
          Length = 931

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 10/177 (5%)

Query: 1   MIRKN-KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M + N +    V D+ETTG   K  DR+I+ G   L+ + K  +T    + P+ R     
Sbjct: 1   MFKMNAETIFAVVDLETTGTSVKDGDRMIQFGC-ALMQHGKIIQTISQLVNPD-RSVPVA 58

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             +L G+    L   P F  I           +  ++AHN  FD  F+NAE +R+    L
Sbjct: 59  IQRLTGLDPNRLVAAPYFEEIAKTLHQLL--TDTVFVAHNVNFDYPFLNAEFERVGLPKL 116

Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +  IDT+ +A+   P  S   L  L     I   H + H A  D+   + +  ++
Sbjct: 117 QLAA-IDTVELAQILLPEISSFRLPDLTSYLQIE--HDNPHQADSDAISTAKLLRQL 170


>gi|23098512|ref|NP_691978.1| hypothetical protein OB1057 [Oceanobacillus iheyensis HTE831]
 gi|22776738|dbj|BAC13013.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 195

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 79/173 (45%), Gaps = 11/173 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +    D ET   + K +    +G V +++ ++    F   + P     S     +HGIT+
Sbjct: 3   KFAAIDFETA--NEKRNSACSVGVV-IMNDTEIIDEFYTLINPLASFRSGNVF-IHGITE 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +++ P+F+ ++     +   ++   IAHNA FD+  +   L + +  P      + T+
Sbjct: 59  EQVQEAPTFAELWPTLSAYL--EDTILIAHNASFDMSVLRQSLNKYDI-PCPNYTSLCTV 115

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            I+R   P    + L+++   +GI ++H   H A+ D+   + +++  +    
Sbjct: 116 KISRLIWPQLENHKLHTVANHHGIALNH---HHAMDDARASAKIFLASLAEQK 165


>gi|325568813|ref|ZP_08145106.1| exonuclease [Enterococcus casseliflavus ATCC 12755]
 gi|325157851|gb|EGC70007.1| exonuclease [Enterococcus casseliflavus ATCC 12755]
          Length = 177

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 74/168 (44%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + +      +  V + D       +   + P       + +++HGI 
Sbjct: 1   MNFIAMDFETA--NYQKHSACSLALVMVQDSKIVGE-YYTLIQPETEFF-WKNIQIHGIR 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +++ P F  ++ +   ++ + N+  +AHNA FD G +   L             + T
Sbjct: 57  PEDVQEAPKFPDVWKQIQQYY-QLNSLIVAHNAGFDTGVLAGCLDYYGLSQ-PNYLSLCT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +  +R+ +P  + + LN++C++  I + +   H AL DS   + + ++
Sbjct: 115 VRTSRKLYPEFTNHKLNTVCEQLQIPLLNH--HDALEDSRACAQILLR 160


>gi|239631939|ref|ZP_04674970.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526404|gb|EEQ65405.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 309

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 16/177 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           IR+     IV DIETTGL S +D II++ A+++ +    + TF  ++ P+        + 
Sbjct: 38  IRRKLYDYIVLDIETTGLSSVSDDIIQLSALKVKEDKVID-TFDSYVKPST-SIPENVVY 95

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120
           + GIT+  +++ P    I  +F  F   +    + HN  +FD+ FI       N    + 
Sbjct: 96  ITGITNSTVENAPEIFEIMPKFVSF--TEGMPLVGHNIIRFDIPFIVN-----NGFYYED 148

Query: 121 SRIIDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +DT  +A+ K    P     L +L + +GI+    S H AL D      VY  +
Sbjct: 149 IEALDTWRLAKNKDFPEPLKNLKLPTLKEYFGIS---GSSHNALDDCKTTITVYRHL 202


>gi|260881564|ref|ZP_05404714.2| helicase, UvrD/REP/exonuclease family protein [Mitsuokella
           multacida DSM 20544]
 gi|260848768|gb|EEX68775.1| helicase, UvrD/REP/exonuclease family protein [Mitsuokella
           multacida DSM 20544]
          Length = 874

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 8/178 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+E TG+D   D II+I  + L    K    F+  L    R++  ++ ++H I+D 
Sbjct: 513 IVVFDVEATGVDPTRDEIIQIAGLRLGRDGKAKAEFKRLLR--ARRSVGDSYRVHKISDA 570

Query: 69  FLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L+ +     ++  EF  F   + A  + HN  +D+  + +EL R+   PL   R  DTL
Sbjct: 571 ILQQEGEEPEAVLREFCAF--AEGAVIVGHNVTYDLSILGSELARLGLPPLSYQRYYDTL 628

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            I RR +P+   + L  L +     +SHRS H A+ D    +++    +    + + G
Sbjct: 629 DIFRRFYPNLPNHKLEYLGEF--CKVSHRSTHDAMDDVCATAEILTYAIEKNIRPHVG 684


>gi|327404630|ref|YP_004345468.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823]
 gi|327320138|gb|AEA44630.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM
           16823]
          Length = 284

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 8/191 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D+ETTGLD   DRIIEI  ++     + +   +  + P     S E+ ++ GITDE
Sbjct: 9   FVMLDLETTGLDVAKDRIIEIALIKTTPTGEQSEYCKR-VNPTI-PISKESAEITGITDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTL 127
            +  +P+F  +  E   F    +A+   +N+  FD+  +  E  RI+       R    +
Sbjct: 67  MVATEPTFEQLADEIAAFIG--DADLGGYNSNKFDIPVLAEEFLRISHSFKINDRKF--I 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            +    H   +  L +  + Y       + H AL D+ +  DV+   +     +      
Sbjct: 123 DVQNIFHKMEQRTLAAAYQFYCKE-PMENAHNALYDTKVTLDVFKAQLERYPDLAKSIPE 181

Query: 188 NEDRFFKEEKK 198
             D   +  ++
Sbjct: 182 LADFSRQGNQE 192


>gi|317485586|ref|ZP_07944462.1| exonuclease [Bilophila wadsworthia 3_1_6]
 gi|316923123|gb|EFV44333.1| exonuclease [Bilophila wadsworthia 3_1_6]
          Length = 169

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 10/166 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET      +   + +  V      +   T    + P  R+       +HGIT +
Sbjct: 6   YVALDFETADYQPDSACAVGLAKVR---GGEVVDTLYSLIRPPRRRVL--FTWVHGITWK 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+F   + +   F  +     +AHNA FD   + A  Q  N   L     + TL 
Sbjct: 61  DVQGSPTFLEFWPQMASFL-QGVTHLVAHNAPFDRRVLEACCQ-SNGIALPDLPFVCTLR 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +RRK     + L+++C+  GI + H   H A  D+   + + I +
Sbjct: 119 ESRRKLKLPSHKLDAVCRCCGIPLDH---HHAGSDAIAAARILIYL 161


>gi|229592763|ref|YP_002874882.1| putative exonuclease [Pseudomonas fluorescens SBW25]
 gi|229364629|emb|CAY52540.1| putative exonuclease [Pseudomonas fluorescens SBW25]
          Length = 203

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 9/169 (5%)

Query: 8   RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  EI  V +L+  +    +Q  +   G +      +L GI+
Sbjct: 3   RIAVIDFETTGITPNSHCRATEIAVV-ILERGQIVDRYQSLMN-AGVRVPGFIEQLTGIS 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  L+  P    + +E  +F        +AHNA FD  F + EL  I +  L   +   +
Sbjct: 61  NAMLRSAPPAERVMNEVNEFVGT--TPLMAHNAAFDQKFWDYELGLIRRTRL--QKFACS 116

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L +ARR  P+   + L +L     +  + +  H A+ D+ + +++   +
Sbjct: 117 LLLARRLMPTAPNHKLGTLNAFAQLPHTGK-AHRAMADAEMAANLTAHL 164


>gi|256828365|ref|YP_003157093.1| DNA polymerase III subunit epsilon [Desulfomicrobium baculatum DSM
           4028]
 gi|256577541|gb|ACU88677.1| DNA polymerase III, epsilon subunit [Desulfomicrobium baculatum DSM
           4028]
          Length = 244

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 19/179 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D E TGL ++ + I+ IGAV +   +     +F V + P+       +  +H IT 
Sbjct: 46  YTVLDTELTGLSARREEIVSIGAVRVRGLAIVPGESFSVLVRPSI-PLPKTSTLIHRITP 104

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +   P  + +  E  +F   +    + H+   D+ F+N   ++ +  PL  +  +DT+
Sbjct: 105 EAIAQAPPLAEVLPELIEFC--KGTLIVGHHVGLDMSFLNRACRKNHGQPLA-NPCLDTM 161

Query: 128 SIAR----RKHPSS--------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +A     ++ PS            L  L   +   +   + H AL D+   + ++I +
Sbjct: 162 RMAMLWREKRTPSHYEQFNLSISYVLTDLAHEF--DLPRFTAHEALGDALQTAYLFIYL 218


>gi|86130881|ref|ZP_01049480.1| exonuclease [Dokdonia donghaensis MED134]
 gi|85818292|gb|EAQ39452.1| exonuclease [Dokdonia donghaensis MED134]
          Length = 229

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 15/176 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGIT 66
           R +VFD ETTGLD K DRI+ +G V ++        T ++FL  +     P++ ++HGI 
Sbjct: 45  RFVVFDTETTGLDYKKDRILSLGGVAVVGNQVIVADTLELFLKQDFYN--PDSAQIHGIL 102

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +    K +     ++  DF        + H+  FDV  +N  L+R     L  +R +DT
Sbjct: 103 KQGNYLKVNEKEAIAQCLDFIGTD--ILVGHHVGFDVAVVNQSLKRAGLGRL-KNRQLDT 159

Query: 127 -LSIARRKHP------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +   R  HP        R  L+ L +   I +  R  H A  DS + +  +IK++
Sbjct: 160 EILYKRLVHPVNRPLQDKRYTLDELAEALKIPLHDR--HTAAGDSLITALAFIKIV 213


>gi|69245046|ref|ZP_00603204.1| Exonuclease [Enterococcus faecium DO]
 gi|314947594|ref|ZP_07851004.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0082]
 gi|68196047|gb|EAN10479.1| Exonuclease [Enterococcus faecium DO]
 gi|313645987|gb|EFS10567.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0082]
          Length = 201

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 9/168 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +M  +  D ET      +     +  V + +    +  F   + P         +++HGI
Sbjct: 24  EMNFVAMDFETANHQPYSA--CSLALVMVKNSQIVDE-FYTLIQPET-PFFWRNVQIHGI 79

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E +++ P F  ++     +F ++N   +AHNA FD   +   L   + +       + 
Sbjct: 80  HQEDVRNAPKFPEVWQTIQPYF-QKNRLVVAHNAAFDTKVLAGCLDYYHLEQ-PNYLSLC 137

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           T+  +RR  P    + LN++C+   I + H   H AL DS   +++ +
Sbjct: 138 TVKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 183


>gi|169633084|ref|YP_001706820.1| ribonuclease T [Acinetobacter baumannii SDF]
 gi|169796663|ref|YP_001714456.1| ribonuclease T [Acinetobacter baumannii AYE]
 gi|184157422|ref|YP_001845761.1| ribonuclease T [Acinetobacter baumannii ACICU]
 gi|213156111|ref|YP_002318531.1| ribonuclease T [Acinetobacter baumannii AB0057]
 gi|215484153|ref|YP_002326378.1| ribonuclease T [Acinetobacter baumannii AB307-0294]
 gi|239503321|ref|ZP_04662631.1| ribonuclease T [Acinetobacter baumannii AB900]
 gi|260550758|ref|ZP_05824966.1| ribonuclease T [Acinetobacter sp. RUH2624]
 gi|260557371|ref|ZP_05829586.1| ribonuclease T [Acinetobacter baumannii ATCC 19606]
 gi|301347763|ref|ZP_07228504.1| ribonuclease T [Acinetobacter baumannii AB056]
 gi|301512246|ref|ZP_07237483.1| ribonuclease T [Acinetobacter baumannii AB058]
 gi|301596674|ref|ZP_07241682.1| ribonuclease T [Acinetobacter baumannii AB059]
 gi|332854542|ref|ZP_08435420.1| ribonuclease T [Acinetobacter baumannii 6013150]
 gi|332870163|ref|ZP_08439075.1| ribonuclease T [Acinetobacter baumannii 6013113]
 gi|332875101|ref|ZP_08442937.1| ribonuclease T [Acinetobacter baumannii 6014059]
 gi|169149590|emb|CAM87480.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse
           activity) [Acinetobacter baumannii AYE]
 gi|169151876|emb|CAP00718.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse
           activity) [Acinetobacter baumannii]
 gi|183209016|gb|ACC56414.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU]
 gi|213055271|gb|ACJ40173.1| ribonuclease T [Acinetobacter baumannii AB0057]
 gi|213986450|gb|ACJ56749.1| ribonuclease T [Acinetobacter baumannii AB307-0294]
 gi|260406264|gb|EEW99748.1| ribonuclease T [Acinetobacter sp. RUH2624]
 gi|260408997|gb|EEX02300.1| ribonuclease T [Acinetobacter baumannii ATCC 19606]
 gi|322507302|gb|ADX02756.1| Ribonuclease T [Acinetobacter baumannii 1656-2]
 gi|323517321|gb|ADX91702.1| ribonuclease T [Acinetobacter baumannii TCDC-AB0715]
 gi|332727951|gb|EGJ59346.1| ribonuclease T [Acinetobacter baumannii 6013150]
 gi|332732430|gb|EGJ63686.1| ribonuclease T [Acinetobacter baumannii 6013113]
 gi|332736718|gb|EGJ67709.1| ribonuclease T [Acinetobacter baumannii 6014059]
          Length = 220

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 79/191 (41%), Gaps = 20/191 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G +++ D ++EI  + ++            F   + P  G     
Sbjct: 17  RFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDR 76

Query: 58  EALKLHGITD------EFLKD-KPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107
            +L   GI           +D + +   IF    +   +Q+      + HNA FD+GF+ 
Sbjct: 77  RSLDFIGIDPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFLQ 136

Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A + R     ++P     ++DT++++       +  L   C + GI    +  H AL D+
Sbjct: 137 AAIARSGTKNQNPFHSFSVMDTVTLSAVMF--GQTVLAKACIQAGIEFDGKEAHSALYDT 194

Query: 165 HLLSDVYIKMM 175
              ++++  ++
Sbjct: 195 QKTAELFCYIL 205


>gi|226952584|ref|ZP_03823048.1| ribonuclease T (degrades tRNA, with exonuclease and ssDNAse
           activity) [Acinetobacter sp. ATCC 27244]
 gi|294649880|ref|ZP_06727280.1| ribonuclease T [Acinetobacter haemolyticus ATCC 19194]
 gi|226836664|gb|EEH69047.1| ribonuclease T (degrades tRNA, with exonuclease and ssDNAse
           activity) [Acinetobacter sp. ATCC 27244]
 gi|292824254|gb|EFF83057.1| ribonuclease T [Acinetobacter haemolyticus ATCC 19194]
          Length = 220

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 76/191 (39%), Gaps = 20/191 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G + + D ++EI  + ++           +FQ  + P  G     
Sbjct: 17  RFRGFLPVVVDVETAGFNCQTDALLEIACIPIVYDEHGQFVPGPSFQAHINPFEGANLDR 76

Query: 58  EALKLHGIT--DEF-LKDKPSFSSIFS-------EFWDFFNEQNAEWIAHNAKFDVGFIN 107
            +L   GI   +   +       S          E     +  +A  + HNA FD+GF+ 
Sbjct: 77  RSLDFIGIDPFNPMRVAMAEDERSALRRIFKSLNEIRKAQHCTHAVLVGHNAHFDLGFLQ 136

Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A + R     ++P     + DT++++       +  L   C + GI    +  H AL D+
Sbjct: 137 AAIARSGTKNQNPFHSFSVFDTVTLSAVMF--GQTVLARACIQAGIEFDGKEAHSALYDT 194

Query: 165 HLLSDVYIKMM 175
              ++++  ++
Sbjct: 195 QKTAELFCYIL 205


>gi|288928331|ref|ZP_06422178.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331165|gb|EFC69749.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108]
          Length = 284

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 12/186 (6%)

Query: 2   IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  R  +VFD+ETTGLD  NDRII+I  +++    K  R   + + P  R    E  
Sbjct: 1   MKLNLTRPLVVFDLETTGLDLVNDRIIQISYIKIYPDGKEERE-NLLVYPQ-RPIPDEVS 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
           +L GIT + ++D P+F  +     + F  +  ++   N   FD+  +  E  R   D   
Sbjct: 59  ELTGITTDLVEDAPTFEELAPRLNEVF--KGCDFAGFNSNHFDIPMLAEEFLRAEIDFDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYIKMMV 176
             +R+ID  +I    H   + +L +  K Y G  +      H A  D+     V +  + 
Sbjct: 117 SSARLIDAQTI---FHKMEKRNLAAAYKFYCGRKMEDDFEAHRADQDAEATYRVLLGELE 173

Query: 177 GGSQIN 182
             S+ N
Sbjct: 174 RYSEAN 179


>gi|302668948|ref|YP_003832773.1| exonuclease family protein [Butyrivibrio proteoclasticus B316]
 gi|302397288|gb|ADL36191.1| exonuclease family protein [Butyrivibrio proteoclasticus B316]
          Length = 302

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/219 (27%), Positives = 94/219 (42%), Gaps = 19/219 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEA 59
           +R NK+  I++D ETTG   K   I++I A++L   +      T   ++ P        A
Sbjct: 26  LRNNKVPIIIYDTETTGT-GKKAYIVQISALKLSPGNPYYIVDTLDQYIRPPI-PMPAAA 83

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA--HNAKFDVGFINAELQRINKDP 117
             ++ ITDEFL+DKPS     S   +FF + N   IA  ++  FD   +N   QR     
Sbjct: 84  SAVNHITDEFLEDKPSEEIALSWIQNFFGDPNDSVIAGYNHISFDNKMMNNMYQRAAGLT 143

Query: 118 LDPSRIIDTLSIARRK-----HPSSRNDLNSLCKRYGITIS-HRSKHGALLDSHLLSDVY 171
            DP   +D L +AR           R  L S+ + YGI     +  H A+ D  +   V 
Sbjct: 144 FDPKWNVDALVMARCLVDRNEITDGRFTLASIAETYGIKTDEDQQLHNAMTDIQVTMKVM 203

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
             +      IN    +  ++ +   + T P I +L   K
Sbjct: 204 WAL------INDYVDSGLEQVY-LSQSTKPIIQILGAPK 235


>gi|257094710|ref|YP_003168351.1| Exonuclease RNase T and DNA polymerase III [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047234|gb|ACV36422.1| Exonuclease RNase T and DNA polymerase III [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 469

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 10/168 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R     +ETTG +   DRI +IG +E         T+   + P  R       +L+G  D
Sbjct: 5   RLAFIGLETTGANPLRDRITKIGVLEAEGDR--VSTWSTLVNPQ-RPIPEFIQQLNGSRD 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D P+F+ + +E  D  + +   +IAH+A+F+  F+  E QR+ K     + ++ T+
Sbjct: 62  ATVADAPTFAQVAAELADRLHGR--LFIAHHARFNYAFVKREFQRLGKSF--RADVLCTV 117

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++R+  P   ++ L SL  R+   ++     GAL  +HLL   +  +
Sbjct: 118 RLSRKLFPEHQKHHLESLMVRH--DLTTGVHSGALAAAHLLGQFWCVL 163


>gi|260912251|ref|ZP_05918803.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260633685|gb|EEX51823.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 284

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 18/240 (7%)

Query: 2   IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  R  IVFD+ETTGLD  NDRII+I  +++    K  R   +F+ P G+    E  
Sbjct: 1   MKLNLTRPLIVFDLETTGLDLVNDRIIQISYIKVYPDGKEERE-NLFVYP-GKPIPDEVS 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
           +L GIT + ++D P+F  +     + F  +  ++   N   FD+  +  E  R   D   
Sbjct: 59  ELTGITTDLVEDAPTFEELAPRLNEVF--KGCDFAGFNSNHFDIPMLAEEFLRAEIDFDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYIKMMV 176
              R+ID  +I    H   + +L +  K Y G  +    + H A  D+     V +  + 
Sbjct: 117 SSVRLIDAQTI---FHKMEKRNLAAAYKFYCGRKMEEDFAAHRADQDAEATYRVLLGELE 173

Query: 177 GGSQINFG----FKTNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQT 230
             S+ N         N+  +  E  K   N+    R   +P+     KE LD+  + I+ 
Sbjct: 174 KYSEANQEEAERVLPNDMDYLAEFSKNNDNVDFAGRIVWRPVLDANGKETLDDKGQVIKK 233


>gi|229551811|ref|ZP_04440536.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1]
 gi|258539212|ref|YP_003173711.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705]
 gi|229314755|gb|EEN80728.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1]
 gi|257150888|emb|CAR89860.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705]
          Length = 180

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      +  V +      + +F   + P   +  P+ +++HGIT
Sbjct: 1   MDFIAMDFETA--NRKRASACSLALVVVQQNRVVD-SFYTLINPQ-MQFDPQNIRIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + ++D+P+F  ++     F+        AHNA FDV  +   L R         ++IDT
Sbjct: 57  PDMVQDQPTFDRVWPHIQMFYTP-GRIVTAHNAPFDVSVLRLTLDRYGI-AAPRYQVIDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +  +R+  P    + L+++     I + H   H AL DS+  + + I 
Sbjct: 115 VKTSRQFLPKLPNHRLDTVSAALKIPLEHH--HNALADSYACARILIA 160


>gi|160895546|ref|YP_001561128.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1]
 gi|160361130|gb|ABX32743.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1]
          Length = 211

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 9/156 (5%)

Query: 6   KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
                V D ETTG+   +  R  E+  V L++  +    FQ  +   G    P   +L G
Sbjct: 2   PQPIAVIDFETTGMAPAQGARATEVAIV-LIEGGQVVDRFQSLMR-TGAWIPPFITRLTG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+  +   P    +  +   F     A  +AHNA FD  F  +EL         P    
Sbjct: 60  ITNAMVAAAPPAEEVMRDAARFVGS--APMVAHNAAFDSKFWQSELALAG--EAAPQPFA 115

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHG 159
            T+ ++RR +P    + L+ L    G+ ++ R  H 
Sbjct: 116 CTVLLSRRIYPEAPSHSLSRLTAHLGLPVAER-AHR 150


>gi|116494972|ref|YP_806706.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334]
 gi|116105122|gb|ABJ70264.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334]
          Length = 928

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K  DR+I+ G   L+ + K  +T    + P+ R       +L G+  
Sbjct: 7   FAVVDLETTGTSVKDGDRMIQFGC-ALMQHGKIIQTISQLVNPD-RSVPVAIQRLTGLDP 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L   P F  I           +  ++AHN  FD  F+NAE +R+    L  +  IDT+
Sbjct: 65  NRLVAAPYFEEIAKTLHQLL--TDTVFVAHNVNFDYPFLNAEFERVGLPKLQLAA-IDTV 121

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +A+   P  S   L  L     I   H + H A  D+   + +  ++
Sbjct: 122 ELAQILLPEISSFRLPDLTSYLQIE--HDNPHQADSDAISTAKLLRQL 167


>gi|19745746|ref|NP_606882.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS8232]
 gi|19747886|gb|AAL97381.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
           MGAS8232]
          Length = 833

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K   +  V D+E TG       I     +   +  K   +++  + P+        +
Sbjct: 15  MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIMDSYETDVNPH-ESLDEHIV 71

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD+ L   P F  +    +     ++  ++AHN KFD   +   L     +   P
Sbjct: 72  HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 129

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DT+ +A+   P   + +L+ L ++  I ++    H A+ D+   + ++++++
Sbjct: 130 --RVDTVELAQLFFPRFEKYNLSHLSRQLNIDLA--EAHTAIADARATAILFLRLL 181


>gi|304386198|ref|ZP_07368531.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
 gi|304327555|gb|EFL94782.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 181

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 12/173 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI  N    +  D ET            I    + +   T+  +   + P   K     +
Sbjct: 1   MIFLN---FVAIDFETA--APARASACSIALTVVQNDQITDELYS-LINPET-KFHWRNV 53

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGI +  ++D P+F  ++     FF       +AHNA FD   +   L+R   + L P
Sbjct: 54  QVHGIHEADVQDAPTFPELWPILQPFFTPDQLV-VAHNANFDNSVLKKTLERYELNRL-P 111

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            + +DTL  +R   P+   + LN+LC   GI + H   H AL DS   +++ +
Sbjct: 112 YQTLDTLRTSRSFFPNYPNHKLNTLCDNLGIELEHH--HNALDDSLACANILL 162


>gi|191638483|ref|YP_001987649.1| ATP-dependent helicase DinG [Lactobacillus casei BL23]
 gi|190712785|emb|CAQ66791.1| ATP-dependent helicase DinG [Lactobacillus casei BL23]
 gi|327382518|gb|AEA53994.1| ATP-dependent helicase [Lactobacillus casei LC2W]
 gi|327385715|gb|AEA57189.1| ATP-dependent helicase [Lactobacillus casei BD-II]
          Length = 928

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K  DR+I+ G   L+ + K  +T    + P+ R       +L G+  
Sbjct: 7   FAVVDLETTGTSVKDGDRMIQFGC-ALMQHGKIIQTISQLVNPD-RSVPVAIQRLTGLDP 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L   P F  I           +  ++AHN  FD  F+NAE +R+    L  +  IDT+
Sbjct: 65  NRLVAAPYFEEIAKTLHQLL--TDTVFVAHNVNFDYPFLNAEFERVGLPKLQLAA-IDTV 121

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +A+   P  S   L  L     I   H + H A  D+   + +  ++
Sbjct: 122 ELAQILLPEISSFRLPDLTSYLQIE--HDNPHQADSDAISTAKLLRQL 167


>gi|120436594|ref|YP_862280.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803]
 gi|117578744|emb|CAL67213.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803]
          Length = 258

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 10/192 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K       FD+ETTG +   DRI+EI  +++      N+    +L    R+   E +
Sbjct: 1   MDLKLTKPICFFDLETTGTNISKDRIVEIAVLKVFPNG--NKESHTWLVNPEREIPAEVI 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLD 119
            +HGIT+E + ++P+F  +  +  D    +  +   +N  +FD+  +  EL R + D   
Sbjct: 59  AIHGITNEKVANEPTFKELAQKIHDLI--KGCDLGGYNSNRFDIPLLVEELLRADIDF-- 114

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             + +  + +    H   +  L++  + Y G  +     HGA  D+    +V    +   
Sbjct: 115 EMKNVVAVDVQTIFHKKEQRTLSAAYQFYCGKELEG--AHGAEADTEATYEVLKSQLDKY 172

Query: 179 SQINFGFKTNED 190
             +    K   D
Sbjct: 173 QDLENDMKWLAD 184


>gi|314937698|ref|ZP_07845022.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a04]
 gi|314943353|ref|ZP_07850126.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133C]
 gi|314953543|ref|ZP_07856454.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133A]
 gi|314994073|ref|ZP_07859394.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133B]
 gi|314996850|ref|ZP_07861856.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a01]
 gi|313589017|gb|EFR67862.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a01]
 gi|313591508|gb|EFR70353.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133B]
 gi|313594422|gb|EFR73267.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133A]
 gi|313597934|gb|EFR76779.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133C]
 gi|313642944|gb|EFS07524.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a04]
          Length = 194

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 9/168 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +M  +  D ET      +     +  V + +    +  F   + P         +++HGI
Sbjct: 17  EMNFVAMDFETANHQPYSA--CSLALVMVKNSQIVDE-FYTLIQPET-PFFWRNVQIHGI 72

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E +++ P F  ++     +F ++N   +AHNA FD   +   L   + +       + 
Sbjct: 73  HQEDVRNAPKFPEVWQTIQPYF-QKNRLVVAHNAAFDTKVLAGCLDYYHLEQ-PNYLSLC 130

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           T+  +RR  P    + LN++C+   I + H   H AL DS   +++ +
Sbjct: 131 TVKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 176


>gi|292488519|ref|YP_003531403.1| exodeoxyribonuclease X [Erwinia amylovora CFBP1430]
 gi|292899700|ref|YP_003539069.1| exodeoxyribonuclease X [Erwinia amylovora ATCC 49946]
 gi|291199548|emb|CBJ46665.1| exodeoxyribonuclease X [Erwinia amylovora ATCC 49946]
 gi|291553950|emb|CBA20995.1| exodeoxyribonuclease X [Erwinia amylovora CFBP1430]
          Length = 221

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V++++    N      + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGLQGG---VVEVASVDVINGQIVN-PMSDLISPD-RPISRQAIAVHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP+       +       +  ++AHNA FD   +          P      I T+++A
Sbjct: 59  RGKPTIEQAIGRYH-----GSPFYVAHNASFDRRML----------PEMHGEWICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           RR  P  +    SL +   + +S  +    H AL D ++ + + I++M
Sbjct: 104 RRLWPGLKYTNESLRQSLQLEVSPPAELHAHRALYDCYVTAALLIRIM 151


>gi|283955874|ref|ZP_06373364.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792534|gb|EFC31313.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 253

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 7/147 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIE+TG  SK   I+EIGAV++ +  +  R FQ F+    ++      +L GIT E
Sbjct: 72  FCIVDIESTGGVSKG-EILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYE 127

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++  S + + S+F  F   +++ ++AHN +FD  FI+  L       L  +R I T+ 
Sbjct: 128 MVENALSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILL-NRRICTIE 184

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155
            A+    S +  L  L +  G+  +H 
Sbjct: 185 FAQCCIESPKYKLEVLKEFLGVENTHH 211


>gi|312172662|emb|CBX80918.1| exodeoxyribonuclease X [Erwinia amylovora ATCC BAA-2158]
          Length = 221

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V++++    N      + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGLQGG---VVEVASVDVINGQIVN-PMSDLISPD-RPISRQAIAVHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP+       +       +  ++AHNA FD   +          P      I T+++A
Sbjct: 59  RGKPTIEQAIGRYH-----GSPFYVAHNASFDRRML----------PEMHGEWICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           RR  P  +    SL +   + +S  +    H AL D ++ + + I++M
Sbjct: 104 RRLWPGLKYTNESLRQSLQLEVSPPAELHAHRALYDCYVTAALLIRIM 151


>gi|312870293|ref|ZP_07730421.1| exonuclease [Lactobacillus oris PB013-T2-3]
 gi|311094177|gb|EFQ52493.1| exonuclease [Lactobacillus oris PB013-T2-3]
          Length = 178

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET    +K      +    + D  +    F   + P         +++HGI 
Sbjct: 1   MNFIAMDFETA--SAKRYSACSLALTIVRDN-QIADEFYTLINPQT-PFFWRNVQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + D P+F  ++     F+  +    IAHN +FD G + + L+    +P    + +DT
Sbjct: 57  ERDVADAPTFPEVWEHIKGFYTPEKLV-IAHNNRFDNGVLKSTLEHYGIEP-PAYQTLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  +RR  P  S   LN++C    I + H   H AL D+   +++ +
Sbjct: 115 VVSSRRLLPGLSNYKLNTVCDALNIDLHHH--HNALDDAQACANILL 159


>gi|199597302|ref|ZP_03210733.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus rhamnosus HN001]
 gi|199591818|gb|EDY99893.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus rhamnosus HN001]
          Length = 180

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      +  V +      + +F   + P   +  P+ +++HGIT
Sbjct: 1   MDFIAMDFETA--NRKRASACSLALVVVQQNRVVD-SFYTLINPQ-MQFDPQNIRIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + ++D+PSF  ++     F+        AHNA FDV  +   L R         ++IDT
Sbjct: 57  PDMVQDQPSFDRVWPHIQMFYTP-GRIVTAHNAPFDVSVLRLTLDRYGI-AAPRYQVIDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +  +R+  P    + L+++     I + H   H AL DS+  + + I 
Sbjct: 115 VKTSRQFLPKLPNHRLDTVSAALKIPLEHH--HNALADSYACARILIA 160


>gi|326565468|gb|EGE15639.1| ribonuclease T [Moraxella catarrhalis 12P80B1]
 gi|326572590|gb|EGE22579.1| ribonuclease T [Moraxella catarrhalis CO72]
          Length = 232

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 20/191 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++  D ++EI  V    +              + P +G    P
Sbjct: 15  RFRGFLPVVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEP 74

Query: 58  EALKLHGIT-DEFLKDKPSFSS--IFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
            ALK  GI  D   +   S          +            +    + HNA FD+GF+N
Sbjct: 75  AALKFTGINPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLN 134

Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A + R N     P     ++DT+S A   +      L   C   G+   ++  H AL D+
Sbjct: 135 AAIARTNSKNHSPFHTFSVLDTVSFAALTY--GHTVLAKTCMIAGLEFDNQHAHSALYDA 192

Query: 165 HLLSDVYIKMM 175
              ++++  ++
Sbjct: 193 QKTAELFCHIV 203


>gi|262372115|ref|ZP_06065394.1| ribonuclease T [Acinetobacter junii SH205]
 gi|262312140|gb|EEY93225.1| ribonuclease T [Acinetobacter junii SH205]
          Length = 221

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 78/191 (40%), Gaps = 20/191 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G +S+ D ++EI  + ++            F   + P  G     
Sbjct: 18  RFRGFLPVVVDVETAGFNSQTDALLEIACIPIVYDQQGQFIPGPAFHAHINPFEGANLDR 77

Query: 58  EALKLHGITD------EFLKD-KPSFSSIFS---EFWDFFNEQNAEWIAHNAKFDVGFIN 107
            +L   GI           +D + +   IF    E     +  +A  + HNA FD+GF+ 
Sbjct: 78  RSLDFIGIDPFNPMRVAMAEDERGALRRIFKSLNEVRKAQHCTHAVLVGHNAHFDLGFLQ 137

Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A + R     ++P     + DT++++       +  L   C + GI    +  H AL D+
Sbjct: 138 AAIARSGTKNQNPFHSFSVFDTVTLSAVMF--GQTVLARACIQAGIEFDGKEAHSALYDT 195

Query: 165 HLLSDVYIKMM 175
              ++++  ++
Sbjct: 196 QKTAELFCYIL 206


>gi|317010079|gb|ADU80659.1| DNA polymerase III subunit epsilon [Helicobacter pylori India7]
          Length = 287

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 84/217 (38%), Gaps = 19/217 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +        L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYISDLTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      +   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 132 LNAPSVHEALQKLRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182
           +R   S R  L+ L +  G  I     H A  D+     ++   ++            I+
Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246

Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           F    N   +       ++T P  SL +R K L   I
Sbjct: 247 FSQCANTLIKRPPRARYQETPPPFSLFERTKGLLNII 283


>gi|221633099|ref|YP_002522324.1| DNA polymerase III subunit epsilon [Thermomicrobium roseum DSM
           5159]
 gi|221156634|gb|ACM05761.1| DNA polymerase III epsilon subunit [Thermomicrobium roseum DSM
           5159]
          Length = 228

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 18/180 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D E TGLD + D ++ +GAV ++        +F   + P  R+   +++ +HGI  
Sbjct: 33  YTVLDAEMTGLDPERDELLALGAVRMVGTRLLLGASFYQLIRPQ-RQGWGQSVTVHGIRP 91

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P    +  EF  F     +  + H  + D  F+     R        +  +DT 
Sbjct: 92  VDVVGAPPLEQVLPEFVRFCAS--SILVGHGVEIDRKFLQRAAARCGLSW-PRTYWVDTG 148

Query: 128 SIARRK-----------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +AR                 R  L  L   Y I     ++H AL D+ + + V+ + + 
Sbjct: 149 RVARWLTSHHGALPEAAADRGRFSLEDLLAAYEIEPP--ARHHALADAFVTALVWQRQLT 206


>gi|261340232|ref|ZP_05968090.1| exodeoxyribonuclease 10 [Enterobacter cancerogenus ATCC 35316]
 gi|288317749|gb|EFC56687.1| exodeoxyribonuclease 10 [Enterobacter cancerogenus ATCC 35316]
          Length = 220

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET  L      I+E+ +V+++D    N      + P+ R  SP+A+ +H IT+  +
Sbjct: 4   VIDTETCDLQGG---IVEVASVDVVDGQIVNPMSH-LVRPD-RPISPQAMAIHRITESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    + S +       +  ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEEVISHYH-----GSPWYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   +++        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPEGLHHHRALYDCYITAALLIDIM 151


>gi|317178251|dbj|BAJ56040.1| DNA polymerase III subunit epsilon [Helicobacter pylori F16]
          Length = 287

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 19/217 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 132 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182
           +R   S R  L+ L +  G +I     H A  D+     ++   ++            I+
Sbjct: 189 KRAILSMRYSLSFLKELLGFSIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246

Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           F    N   +       ++T+   SL +R K L   I
Sbjct: 247 FSKCANTLIKRPPRARHQETLAPFSLFERTKGLLNII 283


>gi|260583570|ref|ZP_05851318.1| DnaQ family exonuclease/DinG family helicase [Granulicatella
           elegans ATCC 700633]
 gi|260158196|gb|EEW93264.1| DnaQ family exonuclease/DinG family helicase [Granulicatella
           elegans ATCC 700633]
          Length = 873

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 75/178 (42%), Gaps = 9/178 (5%)

Query: 6   KMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K    V D+ETTG    +  RI + G   +++  +      +++ P       E  +L G
Sbjct: 2   KTSYAVVDLETTGPKFEEGGRIFQFGC-SIIEQGEIVTQVDLYINPETT-IPYEIQQLTG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +  + +K  P F  + S  +     +   ++AHN  FD  ++    + +       +  +
Sbjct: 60  VDKKEVKQAPYFDEVASTIFQLL--EGKTFVAHNISFDYSYLVESFRELAGIEWS-APCV 116

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           DT+ +A+  +P+     L  L +   I   H+  H A  D++  + +++  +    Q+
Sbjct: 117 DTVQLAQICYPTIESYRLQDLTQLLEIP--HQQIHSAGSDAYATAQLFLNCLEELEQL 172


>gi|125549801|gb|EAY95623.1| hypothetical protein OsI_17478 [Oryza sativa Indica Group]
          Length = 260

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 78/186 (41%), Gaps = 16/186 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG   K+ RI+E    +L      N TF+  + P  R        L  I  +
Sbjct: 62  ILVFDLETTGYFHKDHRIVEFALCDLSGGK--NSTFETLVNPE-RTVPDYVQHLIKIGTD 118

Query: 69  FL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHN-AKFDVGFINAELQRINKDPLDP 120
            +     P FS +      F   + A      W+AHN  +FD  F+  E  R +      
Sbjct: 119 LVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPLPAD 178

Query: 121 SRIIDTLSIARRK----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
               DTL +A++         R  L +L + YGI +SH   H A+ D  +LS V+ KM  
Sbjct: 179 WLFFDTLLLAKKMVKAEGKKRRTSLEALREHYGI-VSHDDAHRAMRDVMILSQVFQKMTF 237

Query: 177 GGSQIN 182
                N
Sbjct: 238 DLKLTN 243


>gi|258507958|ref|YP_003170709.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
 gi|257147885|emb|CAR86858.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
 gi|259649285|dbj|BAI41447.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
          Length = 180

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      +  V +      + +F   + P   +  P+ +++HGIT
Sbjct: 1   MDFIAMDFETA--NRKRASACSLALVVVQQNRVVD-SFYTLINPQ-MQFDPQNIRIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + ++D+P+F  ++     F+        AHNA FDV  +   L R         ++IDT
Sbjct: 57  PDMVQDQPTFDRVWPHIQMFYTP-GRIVTAHNAPFDVSVLRLTLDRYGI-AAPRYQVIDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +  +R+  P    + L+++     I + H   H AL DS+  + + I 
Sbjct: 115 VKTSRQFLPKLPNHRLDTVSAALKIPLEHH--HNALADSYACARILIA 160


>gi|192362510|ref|YP_001983050.1| ribonuclease T [Cellvibrio japonicus Ueda107]
 gi|190688675|gb|ACE86353.1| ribonuclease T [Cellvibrio japonicus Ueda107]
          Length = 223

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 18/210 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NGRKNSP 57
           R      ++ D+ET G +++ D ++EI AV +          + TF   + P  G     
Sbjct: 17  RFRGFLPVIVDVETGGFNAQTDALLEIAAVTIRMDEDGFLHRHETFAFQVEPFEGANIEQ 76

Query: 58  EALKLHGITDE--FLKDKPSF---SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
            AL   GI  +      +P     + +FS       E        + HNA FD+GF+NA 
Sbjct: 77  AALDFTGIDPDSPDRIAEPELMVMTDLFSAVRRAVKESGCTRAVMVGHNAHFDLGFVNAA 136

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           ++R N  ++P  P  + DT ++A       +  L   CK  GI  S+ + H A  D+   
Sbjct: 137 VERCNIKRNPFHPFSVFDTATLAGLAF--GQTVLAKACKTAGIEFSNSAAHCAAYDAEKT 194

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEK 197
           +D++  ++V   Q   G+  ++D   ++ +
Sbjct: 195 ADLFC-LIVNRWQTLGGWCASDDELDEDAE 223


>gi|114321417|ref|YP_743100.1| ribonuclease T [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227811|gb|ABI57610.1| RNAse T [Alkalilimnicola ehrlichii MLHE-1]
          Length = 216

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 17/188 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET GL++  D +++I AV L            T    + P  G    P
Sbjct: 18  RFRGFLPVVVDVETGGLNAATDALLQIAAVVLRMDENGRLYPAATHTCHVKPFEGANIDP 77

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAE 109
           +AL+L+GI  +  L+          + +    ++        A  I HN+ FD+GF+NA 
Sbjct: 78  KALELNGIDPDHPLRMALPEDEALKKVFRPIRQEVRQTGCNRAVLIGHNSFFDLGFLNAA 137

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           +QR    ++P  P    DT ++A   +   +  L       G     ++ H A+ D+   
Sbjct: 138 VQRCGIKRNPFHPFTSFDTATLAGLAY--GQTVLAKALVASGEEWDGKAAHSAIYDAEKT 195

Query: 168 SDVYIKMM 175
           +D++  ++
Sbjct: 196 ADLFCGIV 203


>gi|325286963|ref|YP_004262753.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489]
 gi|324322417|gb|ADY29882.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489]
          Length = 221

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 91/184 (49%), Gaps = 15/184 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63
             +  +V D ETTG   + DR++ IGA++L +       +F+VF+  +      E  ++H
Sbjct: 32  QDITFVVLDTETTGFSYQEDRMLCIGALKLKNNDINIGDSFEVFIHQDHYN--QETAEIH 89

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI  E    +         F  +   +N+  +AH+A FDV FIN  L+R +   L  ++I
Sbjct: 90  GILKEGKTTRLEELETLKLFLAYL--KNSVIVAHHAGFDVTFINMALERHSLPKL-KNKI 146

Query: 124 IDTLSIARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +DT ++ ++               L+ L +++ I++  R  H AL D+++ +  ++K++V
Sbjct: 147 LDTSTLYKKTLIRSNLLVKKEHYSLDELAEKFSISVKDR--HTALGDAYITAIAFLKILV 204

Query: 177 GGSQ 180
              +
Sbjct: 205 KLKE 208


>gi|300934175|ref|ZP_07149431.1| putative exonuclease [Corynebacterium resistens DSM 45100]
          Length = 214

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 70/192 (36%), Gaps = 31/192 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+ D+ETTGL+ KN RIIE+  + + D    N   +  L P     S     L GIT+  
Sbjct: 18  IIIDVETTGLEPKNHRIIEVATLTVRDAQPINSQ-RWLLNPEDH-ISEFITDLTGITNAH 75

Query: 70  LKDKPSFSSIFSEFWDFFNEQN---------AEWIAHNAKFDVGFINAELQ--------- 111
           +   P+F S+  E     N               + HN  FD  F+  EL          
Sbjct: 76  VAKCPTFRSVAEEIMSVLNPAGEHGSDTGQAPILVGHNVAFDYSFLQHELLRNELHSPIN 135

Query: 112 ------RINKDPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALL 162
                 R          ++ T  IAR   P     R  L ++   +     HR +H A +
Sbjct: 136 DAHGSGREQLRAPYTPPLLCTAEIARTLIPRSAVGRYRLANVAAYF--DAPHRPQHRADV 193

Query: 163 DSHLLSDVYIKM 174
           D     DV   +
Sbjct: 194 DVWATFDVLCGL 205


>gi|262368659|ref|ZP_06061988.1| ribonuclease T [Acinetobacter johnsonii SH046]
 gi|262316337|gb|EEY97375.1| ribonuclease T [Acinetobacter johnsonii SH046]
          Length = 219

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 80/196 (40%), Gaps = 20/196 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G +++ D ++EI A+ ++   +            + P  G     
Sbjct: 16  RFRGFLPVVVDVETAGFNAQTDALLEIAAIPIIYNEEGQFVPGPAHHAHINPFEGANLDR 75

Query: 58  EALKLHGITD------EFLKD-KPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107
            +L   GI           +D K +   IF    +   +QN      + HNA FD+GF+ 
Sbjct: 76  RSLDFIGIDPFNPMRMAMAEDEKTALKRIFKAVNEVRRQQNCTHAVLVGHNAHFDLGFVQ 135

Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A + R     ++P     + DT++++       +  L   C + GI    R  H AL D+
Sbjct: 136 AAIARTGTKNQNPFHSFSVFDTVTLSAVMF--GQTVLAKSCIQAGIEFDGREAHSALYDT 193

Query: 165 HLLSDVYIKMMVGGSQ 180
              ++++  ++   + 
Sbjct: 194 QKTAELFCYILNKLAP 209


>gi|317052331|ref|YP_004113447.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
 gi|316947415|gb|ADU66891.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
          Length = 166

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 9/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
                 D ET   + +      IG V + +     R +   + P   + +     +HG+T
Sbjct: 2   QNFTAIDFETA--NEQRTSACAIGVVVVENRQIV-RQYARLIRPEPMRFASFNTAVHGLT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +   P F  ++ E            +AHN  FD+  +   L+        P   + +
Sbjct: 59  AADVAGAPVFGELWPEIAADIVSAPL-LVAHNTSFDMSVLQHCLRSSGIAANIPDA-VCS 116

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +A++  P    + LN+LCK +GI ++H   H AL D+   + + +++
Sbjct: 117 CRMAKKLLPQLVNHKLNTLCKHFGIPLNH---HDALSDAQAAARIILEL 162


>gi|320161625|ref|YP_004174850.1| hypothetical protein ANT_22240 [Anaerolinea thermophila UNI-1]
 gi|319995479|dbj|BAJ64250.1| hypothetical protein ANT_22240 [Anaerolinea thermophila UNI-1]
          Length = 194

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 18/180 (10%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K   I  D ETTGL ++ D IIEI  V   D  +    ++  + P  R   P+A+ +HGI
Sbjct: 22  KHNPIYLDTETTGLSAQ-DEIIEISIVN--DNGEVV--YESLVRPT-RPIPPDAIAVHGI 75

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           ++E ++    +  ++ E            + +N +FD+  +     R+     D  R  D
Sbjct: 76  SNEDVQKARPWHIVWQEVRPILLNAG-VVVIYNEEFDLRMMQQSHARLGLPWRDRFRTFD 134

Query: 126 TLSIARRKH----PSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            + +    +    P  R    + L++  K  GIT+ +   H A  D+ L     +  M G
Sbjct: 135 LMKLYAEYYGEWDPKRRAYRYHSLDAAGKHCGITLPN--AHRATADTLLT-RALLHFMAG 191


>gi|310659214|ref|YP_003936935.1| helicase, uvrd/rep/exonuclease family protein [Clostridium
           sticklandii DSM 519]
 gi|308825992|emb|CBH22030.1| putative Helicase, UvrD/REP/exonuclease family protein [Clostridium
           sticklandii]
          Length = 828

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 116/245 (47%), Gaps = 32/245 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGLD K D+II+I A++        + F+ F+  +   +  ++ K+H I+DEF
Sbjct: 469 VVFDVETTGLDIKKDKIIQIAALKGGKNG-VLQKFERFIKIDY--SVGDSFKIHNISDEF 525

Query: 70  L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127
           L ++     S   +F  F   Q++  + HN  +D+  +   ++ I+ +     S+I DTL
Sbjct: 526 LFQNGVDAKSAIDDFLLF--SQDSVIVGHNVSYDINILKENMKAIDLNIDKLSSKIFDTL 583

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY----IKMMVGGSQIN 182
            + R+ +P      L +L K +  +++H   H A+ D     +V      K++   ++  
Sbjct: 584 ILTRKTYPGFFSYKLGNLFKEF--SLNHTPTHNAMDDVICTLEVLEKVVAKLLEKQAKRQ 641

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE---HDKTIQTLGKNAIWDR 239
             F   +D F+            + R+  +   ++KE+  +   H+  I    +  + ++
Sbjct: 642 AVFTKYQDYFY-----------PIARNLGILAELSKEKRPQDILHEALI----RAGLIEK 686

Query: 240 YISSN 244
           Y  ++
Sbjct: 687 YSKTS 691


>gi|239502706|ref|ZP_04662016.1| hypothetical protein AbauAB_10367 [Acinetobacter baumannii AB900]
          Length = 179

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 67/164 (40%), Gaps = 5/164 (3%)

Query: 12  FDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            D ETTGL+ +N D+IIEI  ++          F   + P  R   P+A  +HGI+   L
Sbjct: 8   VDTETTGLEVENGDKIIEIALIKYDLDGAKLEEFVQRIDPE-RNIDPKAQAVHGISYSDL 66

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P F  I  E     N   +  +AHN  FD  FI  EL+R    P   S    T+   
Sbjct: 67  IGCPKFVDIAEEVASIVNHA-SLLVAHNFAFDGPFIATELKRAGMTPKKVSS-FCTMEYG 124

Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           R      +   L  LC   G+     + H A  D  ++   + K
Sbjct: 125 RWATFDGKYPKLADLCFSLGVEYDASAAHAASYDVDVMMQCFFK 168


>gi|259507628|ref|ZP_05750528.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
 gi|259164807|gb|EEW49361.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
          Length = 494

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 82/205 (40%), Gaps = 11/205 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGIT 66
            + FD+ET   +     I +IG V   +  + + T   F  P    N   P  + +HGIT
Sbjct: 126 FVAFDVETA--NDDWGSICQIGLVRYENGVEVDST-SWFCTPPEPLNFFEPANIAIHGIT 182

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +  +P+F+ +  +  DF    +   +AHNA+FD   I+        +         +
Sbjct: 183 AEQVAGEPAFAEVLPKMVDFVG--DLPLVAHNAQFDFTAISRACAAAGIEA-PVFNFGCS 239

Query: 127 LSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           L+++R  +     + L ++ +  G+ +  R  H A  D+   + + I++    +      
Sbjct: 240 LALSRSSRLKFHNHRLPTVAQALGVEL--RKHHDATEDARACAGITIELARRQNHQGGFI 297

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
                + F         +  + RD+
Sbjct: 298 DFIHSQGFTLGSLDTERVYPVLRDR 322


>gi|25028571|ref|NP_738625.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
 gi|23493856|dbj|BAC18825.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
          Length = 569

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 82/205 (40%), Gaps = 11/205 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGIT 66
            + FD+ET   +     I +IG V   +  + + T   F  P    N   P  + +HGIT
Sbjct: 201 FVAFDVETA--NDDWGSICQIGLVRYENGVEVDST-SWFCTPPEPLNFFEPANIAIHGIT 257

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +  +P+F+ +  +  DF    +   +AHNA+FD   I+        +         +
Sbjct: 258 AEQVAGEPAFAEVLPKMVDFVG--DLPLVAHNAQFDFTAISRACAAAGIEA-PVFNFGCS 314

Query: 127 LSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           L+++R  +     + L ++ +  G+ +  R  H A  D+   + + I++    +      
Sbjct: 315 LALSRSSRLKFHNHRLPTVAQALGVEL--RKHHDATEDARACAGITIELARRQNHQGGFI 372

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210
                + F         +  + RD+
Sbjct: 373 DFIHSQGFTLGSLDTERVYPVLRDR 397


>gi|319760500|ref|YP_004124438.1| ribonuclease T [Candidatus Blochmannia vafer str. BVAF]
 gi|318039214|gb|ADV33764.1| ribonuclease T [Candidatus Blochmannia vafer str. BVAF]
          Length = 221

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 25/204 (12%)

Query: 2   IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLC-PNGR 53
             K++ R    +V D+ET GL++  D ++EI  + L      +   +      +    G 
Sbjct: 10  TLKSRFRGFYPVVIDVETAGLNANTDALLEIATITLKMDSDGWLCMDNVLHFNIKSFPGA 69

Query: 54  KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGF 105
              P AL L+ I  +  L+   +     +E +   N          A  +AHNA FD  F
Sbjct: 70  NLHPSALALNKIDPNNPLRFAVTEQEALNEIFKMVNMGIKIHECHKAIIVAHNASFDHSF 129

Query: 106 INAELQR-------INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
           I A ++R       +N +P  P    DT +++       +  L + CK  GI       H
Sbjct: 130 IMAAIERISDTNNNMNVNPFHPFVTFDTAALSGLVF--GQTVLATACKHAGIVFDKSKAH 187

Query: 159 GALLDSHLLSDVYIKMMVGGSQIN 182
            AL D+   + ++ +++    ++ 
Sbjct: 188 SALYDTEKTAILFCELVNIWKRLG 211


>gi|218295556|ref|ZP_03496369.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
 gi|218244188|gb|EED10714.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
          Length = 247

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D+ETTGL    + IIE+  V L    +    FQ    P  R  SP   +L GIT E 
Sbjct: 74  VVLDLETTGLAPGLNEIIEVALVRLEGERRV--AFQSLARP-RRPPSPFIQRLTGITLEE 130

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+  P    +   F  +   + A  +  NA FD+GF+   L  +  +  +P  ++D++ +
Sbjct: 131 LEKAPPLEEVL--FRAYPLLEGATLVIQNASFDLGFLRPALGELGLELENP--VVDSIRL 186

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL----SDVYIKMMVG 177
           ++R      R  L++L +   + ++ R++H ALLD         +VY  +  G
Sbjct: 187 SKRAMRGLRRYGLDALSEV--LELAPRAEHRALLDVERTLAVVYEVYYMLTSG 237


>gi|15616394|ref|NP_244699.1| hypothetical protein BH3832 [Bacillus halodurans C-125]
 gi|10176457|dbj|BAB07551.1| BH3832 [Bacillus halodurans C-125]
          Length = 265

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 89/184 (48%), Gaps = 8/184 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59
           +   K+  +VFD+ET+G    + DRI+ IGAV+++  +     TF   +  +        
Sbjct: 73  LPLEKLPVVVFDLETSGFYPDQGDRILSIGAVKVVGLTIQEEETFYSVVHTDTVP-PENI 131

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           L+L G++ E L+  P  +S+   F+ F   +++  +AH+A  +  F++    +  K P +
Sbjct: 132 LELTGLSVEELEAAPPLTSVLESFYAFI--RHSTLVAHHASHEKAFMSHVTWQTMKLPFE 189

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             R+IDT  + +   P     L+  C  Y I + +R  H A  DS + + ++I  +    
Sbjct: 190 -HRVIDTSFLTKIVAPQELVTLDDCCAYYSIPVQNR--HHAFEDSLMTAKLWIAAIAAAR 246

Query: 180 QINF 183
           +  F
Sbjct: 247 EAGF 250


>gi|297184143|gb|ADI20262.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 442

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 9/160 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR  V DIE TG    ++RII++    L +    ++     + P  +   P   KL GIT
Sbjct: 1   MRFAVIDIECTGGTFGSERIIDVAIFVLENGEVVDQ-LVSLVNPE-KGIDPYVTKLTGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++  P F  +          ++  ++AHN  FD      E + +  D       +DT
Sbjct: 59  NKMVRTAPKFYELAKRVVKI--TEDCTFVAHNISFDYRVFQQEFESMEFD--YHRATLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH 165
           +    R  P      L ++ K  G+  S  ++H A  D+ 
Sbjct: 115 IPYCERIFPDWENYGLKTVSKELGLVNS--ARHRAEGDAR 152


>gi|283954255|ref|ZP_06371779.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794273|gb|EFC33018.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 253

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 7/145 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + DIE+TG  SK   I+EIGAV++ +  +  R FQ F+    ++      +L GIT E +
Sbjct: 74  IVDIESTGGVSKG-EILEIGAVKIQNSKEIGR-FQSFIK--VKEIPENITELTGITYEMV 129

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++ P  + + S+F  F   +++ ++AHN +FD  FI+  L       L  +R I T+  A
Sbjct: 130 ENAPILAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILL-NRRICTIEFA 186

Query: 131 RRKHPSSRNDLNSLCKRYGITISHR 155
           +    S +  L  L +   I  +H 
Sbjct: 187 QCCIESPKYKLEVLKELLSIENTHH 211


>gi|38344168|emb|CAE03499.2| OSJNBa0053K19.7 [Oryza sativa Japonica Group]
 gi|116309750|emb|CAH66793.1| H0215F08.4 [Oryza sativa Indica Group]
 gi|125591688|gb|EAZ32038.1| hypothetical protein OsJ_16216 [Oryza sativa Japonica Group]
 gi|215712387|dbj|BAG94514.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 260

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 78/186 (41%), Gaps = 16/186 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG   K+ RI+E    +L      N TF+  + P  R        L  I  +
Sbjct: 62  ILVFDLETTGYFHKDHRIVEFALCDLSGGK--NSTFETLVNPE-RTVPDYVEHLIKIGTD 118

Query: 69  FL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHN-AKFDVGFINAELQRINKDPLDP 120
            +     P FS +      F   + A      W+AHN  +FD  F+  E  R +      
Sbjct: 119 LVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPLPAD 178

Query: 121 SRIIDTLSIARRK----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
               DTL +A++         R  L +L + YGI +SH   H A+ D  +LS V+ KM  
Sbjct: 179 WLFFDTLLLAKKMVKAEGKKRRTSLEALREHYGI-VSHDDAHRAMRDVMILSQVFQKMTF 237

Query: 177 GGSQIN 182
                N
Sbjct: 238 DLKLTN 243


>gi|313206047|ref|YP_004045224.1| exonuclease rnase t and DNA polymerase iii [Riemerella
           anatipestifer DSM 15868]
 gi|312445363|gb|ADQ81718.1| Exonuclease RNase T and DNA polymerase III [Riemerella
           anatipestifer DSM 15868]
          Length = 254

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 10/192 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K      +FD+ETTG +   DRI+EI  ++ ++   +  T    + P        A 
Sbjct: 1   MNLKLHKPLCIFDLETTGTNISKDRIVEICILK-VNTDASRETKTWLVNPEMH-IPAFAT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
            +HGI+DE +KD P+   I  +  +  +   A+    N  +FDV  +  E+ R   D  L
Sbjct: 59  AVHGISDEDVKDAPTLKEIAPKIMEMIS--GADLGGFNSNRFDVPLLAEEMLRAGVDFDL 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              +++D   I  +  P    +L++  + Y    +    H A  D+    +V    +   
Sbjct: 117 SKMKLVDAQVIFHKMEP---RNLSAAYQFY-CNKTLEDAHSAEADTLATFEVLDAQVGKY 172

Query: 179 SQINFGFKTNED 190
            ++        +
Sbjct: 173 EELPKDINGLSE 184


>gi|228474048|ref|ZP_04058789.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
 gi|228274562|gb|EEK13403.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
          Length = 257

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 9/176 (5%)

Query: 2   IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +  N  R I  FD+ETTG D   DRI+EI  +++      NR  + +L        P + 
Sbjct: 1   MELNLTRPICFFDLETTGTDVSRDRIVEISILKVWPNG--NRESKTYLVNPTIPIPPAST 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLD 119
            +HGI+DE +   P+F  +  +       ++++   +N  +FD+  +  EL R   D   
Sbjct: 59  AIHGISDERVAQAPTFKELAKQIHAMI--KDSDLAGYNSDRFDIPLLAEELLRAGVDFDL 116

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +R+  T+ +    H   +  L++  K Y       + H A  D+    ++    +
Sbjct: 117 KNRV--TVDVQTIFHKMEQRTLSAAYKFY-CKKELDNAHTAAADTEATYEILKAQL 169


>gi|326562712|gb|EGE13014.1| ribonuclease T [Moraxella catarrhalis 103P14B1]
 gi|326568721|gb|EGE18791.1| ribonuclease T [Moraxella catarrhalis BC8]
 gi|326574186|gb|EGE24134.1| ribonuclease T [Moraxella catarrhalis 101P30B1]
 gi|326575625|gb|EGE25549.1| ribonuclease T [Moraxella catarrhalis O35E]
          Length = 232

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 20/191 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++  D ++EI  V    +              + P +G    P
Sbjct: 15  RFRGFLPVVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEP 74

Query: 58  EALKLHGIT-DEFLKDKPSFSS--IFSEFWDFFN-------EQNAEWIAHNAKFDVGFIN 107
            ALK  GI  D   +   S          +            +    + HNA FD+GF+N
Sbjct: 75  AALKFTGINPDSPFRKAISEDEKTALRRIFKALKALKKEHSCRQCILVGHNAHFDLGFLN 134

Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A + R N     P     ++DT+S A   +      L   C   G+   ++  H AL D+
Sbjct: 135 AAIARTNSKNHSPFHTFSVLDTVSFAALTY--GHTVLAKTCMIAGLEFDNQHAHSALYDA 192

Query: 165 HLLSDVYIKMM 175
              ++++  ++
Sbjct: 193 QKTAELFCHIV 203


>gi|269467908|gb|EEZ79647.1| DNA polymerase III, epsilon subunit [uncultured SUP05 cluster
           bacterium]
          Length = 196

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 19/195 (9%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NG 52
           M  K+++R    +V DIET G + K D ++EI A+ + +D         +    + P  G
Sbjct: 1   MKIKDRIRGYLPVVVDIETGGFNDKTDAMLEICAIIIGIDDKGVYYPKDSRHFHIEPFKG 60

Query: 53  RKNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG 104
               P ALK +GI  +   +   S      E +     +        A  + HNA FD+G
Sbjct: 61  ANLDPSALKFNGIDVNNPFRMAVSEKEALGEIFKTARAEMKEEECTRAILVGHNAFFDLG 120

Query: 105 FINAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+ A   R   K+P      IDT+S++   +      L    +   I       H AL D
Sbjct: 121 FLYAASNRSKLKNPFHQFSTIDTVSLSALYY--GETVLAKAMRVANIEWDDAKAHSALYD 178

Query: 164 SHLLSDVYIKMMVGG 178
           +   ++++ K+    
Sbjct: 179 TKKTAELFCKIFNAQ 193


>gi|66395669|ref|YP_240034.1| ORF013 [Staphylococcus phage 47]
 gi|209363557|ref|YP_002267975.1| hypothetical protein phi2958PVL_gp05 [Staphylococcus phage
           phi2958PVL]
 gi|257428268|ref|ZP_05604666.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|282905892|ref|ZP_06313747.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282919259|ref|ZP_06326994.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           C427]
 gi|284024544|ref|ZP_06378942.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus 132]
 gi|62636093|gb|AAX91204.1| ORF013 [Staphylococcus phage 47]
 gi|208973058|dbj|BAG74374.1| hypothetical protein [Staphylococcus phage phi2958PVL]
 gi|257275109|gb|EEV06596.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|282317069|gb|EFB47443.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           C427]
 gi|282331184|gb|EFB60698.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
          Length = 306

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 9/172 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D+ET   + +   I  I  ++  D    +  +   + P    +S     +HGI+
Sbjct: 1   MDFVAIDVETA--NEQRSSICSIALLKFQDNKMRDAIY-THINPETYFSS-INTSIHGIS 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E + D P    +      F +  N   +AHN  FD+  +    ++ N  PL  ++   T
Sbjct: 57  EEDVMDSPKMYQMHEAIIRFLD--NHIIVAHNTSFDMYALCDSFKKYNL-PLPSNQYFCT 113

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +++  +      L  L + + I       H A  D+ + + +   ++   
Sbjct: 114 YRLSKDLYNLPSYRLQDLAEHFDIKNE--EYHNAFYDAKVCAKIAYNILKDQ 163


>gi|317179729|dbj|BAJ57517.1| DNA polymerase III subunit epsilon [Helicobacter pylori F30]
          Length = 287

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 19/217 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 132 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182
           +R   S R  L+ L +  G  I     H A  D+     ++   ++            I+
Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246

Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           F    N   +     + ++T+    L +R K L   I
Sbjct: 247 FSKCANTLIKRPPRAKHQETLAPFPLFERTKGLLNII 283


>gi|315585931|gb|ADU40312.1| DNA polymerase III subunit epsilon [Helicobacter pylori 35A]
          Length = 287

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 8/161 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVRGGGIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 132 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +R   S R  L+ L +  G  I     H A  D+     ++
Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLF 227


>gi|315022360|gb|EFT35388.1| DNA Pol III Epsilon Chain [Riemerella anatipestifer RA-YM]
 gi|325336512|gb|ADZ12786.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases
           [Riemerella anatipestifer RA-GD]
          Length = 254

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 10/192 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K      +FD+ETTG +   DRI+EI  ++ ++   +  T    + P        A 
Sbjct: 1   MNLKLHKPLCIFDLETTGTNISKDRIVEICILK-VNPDASRETKTWLVNPEMH-IPAFAT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
            +HGI+DE +KD P+   I  +  +  +   A+    N  +FDV  +  E+ R   D  L
Sbjct: 59  AVHGISDEDVKDAPTLKEIAPKIMEMIS--GADLGGFNSNRFDVPLLAEEMLRAGVDFDL 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              +++D   I  +  P    +L++  + Y    +    H A  D+    +V    +   
Sbjct: 117 SKMKLVDAQVIFHKMEP---RNLSAAYQFY-CNKTLEDAHSAEADTLATFEVLDAQVGKY 172

Query: 179 SQINFGFKTNED 190
            ++        +
Sbjct: 173 EELPKDINGLSE 184


>gi|115460648|ref|NP_001053924.1| Os04g0623400 [Oryza sativa Japonica Group]
 gi|113565495|dbj|BAF15838.1| Os04g0623400 [Oryza sativa Japonica Group]
          Length = 282

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 78/186 (41%), Gaps = 16/186 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG   K+ RI+E    +L      N TF+  + P  R        L  I  +
Sbjct: 62  ILVFDLETTGYFHKDHRIVEFALCDLSGGK--NSTFETLVNPE-RTVPDYVEHLIKIGTD 118

Query: 69  FL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHN-AKFDVGFINAELQRINKDPLDP 120
            +     P FS +      F   + A      W+AHN  +FD  F+  E  R +      
Sbjct: 119 LVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPLPAD 178

Query: 121 SRIIDTLSIARRK----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
               DTL +A++         R  L +L + YGI +SH   H A+ D  +LS V+ KM  
Sbjct: 179 WLFFDTLLLAKKMVKAEGKKRRTSLEALREHYGI-VSHDDAHRAMRDVMILSQVFQKMTF 237

Query: 177 GGSQIN 182
                N
Sbjct: 238 DLKLTN 243


>gi|317181232|dbj|BAJ59018.1| DNA polymerase III subunit epsilon [Helicobacter pylori F32]
          Length = 287

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 19/217 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 132 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182
           +R   S R  L+ L +  G  I     H A  D+     ++   ++            I+
Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246

Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           F    N   +       ++T+    L +R K LF  I
Sbjct: 247 FSKCANTLIKRPPRARHQETLAPFPLFERTKGLFNII 283


>gi|213964373|ref|ZP_03392587.1| exonuclease [Capnocytophaga sputigena Capno]
 gi|213952985|gb|EEB64353.1| exonuclease [Capnocytophaga sputigena Capno]
          Length = 164

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 70/167 (41%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +     +  IG V + +    + T+   + P     S    ++HG++  
Sbjct: 4   FVALDFETA--NQYRSSVCSIGLVFVENNEIVD-TYYQLIKPAPNFYSYFNTQVHGLSQY 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             ++ P F  +++E       ++   +AHN+ FD G +   L      P   +    TL 
Sbjct: 61  DTENAPLFPEVWTEILPKI--KDLPLVAHNSMFDEGCLREVLA-YYALPQHTNPFFCTLR 117

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            AR+  P    + LN++   +G  +  +  H AL D+   + + +++
Sbjct: 118 AARKSLPQLVNHKLNTVSAYFGFDL--KQHHHALADAEACAHIALEL 162


>gi|262279766|ref|ZP_06057551.1| ribonuclease T [Acinetobacter calcoaceticus RUH2202]
 gi|262260117|gb|EEY78850.1| ribonuclease T [Acinetobacter calcoaceticus RUH2202]
          Length = 220

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 80/191 (41%), Gaps = 20/191 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G +++ D ++EI  + ++            F   + P  G     
Sbjct: 17  RFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDR 76

Query: 58  EALKLHGITD------EFLKD-KPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107
            +L   GI           +D + +   IF    +   +Q+      + HNA FD+GF+ 
Sbjct: 77  RSLDFIGIDPFNPMRMAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFVQ 136

Query: 108 AELQRI---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A + R    N++P     ++DT++++       +  L   C + GI    +  H AL D+
Sbjct: 137 AAIARTSTKNQNPFHSFSVMDTVTLSAVMF--GQTVLAKACIQAGIEFDGKEAHSALYDT 194

Query: 165 HLLSDVYIKMM 175
              ++++  ++
Sbjct: 195 QKTAELFCYIL 205


>gi|302059908|ref|ZP_07251449.1| ribonuclease T [Pseudomonas syringae pv. tomato K40]
          Length = 225

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPN-GRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV    +   +     T+   + P  G      AL+  
Sbjct: 32  PVVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFT 91

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
           GI  D  L+   S  +  ++              + A  + HNA FD+GF+NA + R+  
Sbjct: 92  GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P    DT ++A   +   +  L   C+  GI    R  H A  D+   ++++  
Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKPAELFCG 209

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 210 IVNRWKEMG 218


>gi|259502770|ref|ZP_05745672.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           antri DSM 16041]
 gi|259169273|gb|EEW53768.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           antri DSM 16041]
          Length = 178

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     K      +    + +  +    F   + P         +++HGI 
Sbjct: 1   MNFIAMDFETA--SGKRYSACSLALTIVRNN-QIADEFYTLINPQT-PFFWRNVQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + + P+F  ++     F+   +   IAHN +FD G + + L+    +P    + +DT
Sbjct: 57  ERDVANAPTFPEVWEHIKGFYTP-DKLVIAHNNRFDNGVLKSTLEHYGIEP-PAYQTLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  +RR  P  S   LN++C    I + H   H AL D+   +++ +
Sbjct: 115 VVSSRRLLPGLSNYKLNTVCAALNIDLHHH--HNALDDAQACANILL 159


>gi|332674336|gb|AEE71153.1| DNA-directed DNA polymerase III epsilon subunit [Helicobacter
           pylori 83]
          Length = 287

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 84/217 (38%), Gaps = 19/217 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 132 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182
           +R   S R  L+ L +  G  I     H A  D+     ++   ++            I+
Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPNYIKTTMDLID 246

Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           F    N   +       ++T+    L KR K L   I
Sbjct: 247 FSKCANTLIKRPPRARHQETLAPFPLFKRTKGLLNII 283


>gi|302541826|ref|ZP_07294168.1| putative DNA polymerase III epsilon subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459444|gb|EFL22537.1| putative DNA polymerase III epsilon subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 239

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 16/185 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   I FD+ETTG D +  RI+    VE+       R    +L         +A+ 
Sbjct: 1   MGWHRELLIGFDLETTGTDPRTARIVTAAVVEVRGGEPIGR--HEWLAAPEVPIPDDAVA 58

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAEL-------- 110
           +HGIT+E          +  E  D         A  +A+NA FD+  + AEL        
Sbjct: 59  VHGITNERAAAGRPIREVADEIADVLVAHWRAGAPVVAYNAAFDLSLLAAELDRHGLRSL 118

Query: 111 -QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            +R+   P  P     T+  A  ++   +  L ++C  YG+  +H   H A  D+     
Sbjct: 119 GERLGGAPTGPVVDPYTIDRAVDRYRKGKRTLEAVCGEYGV--AHERAHEAGADALAAVR 176

Query: 170 VYIKM 174
           V   +
Sbjct: 177 VACAL 181


>gi|254780064|ref|YP_003058171.1| DNA polymerase III subunit epsilon [Helicobacter pylori B38]
 gi|254001977|emb|CAX30236.1| DNA polymerase III epsilon subunit [Helicobacter pylori B38]
          Length = 287

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 19/217 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 132 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182
           +R   S R  L+ L +  G  I     H A  D+     ++   ++            I+
Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246

Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           F    N   +     + ++T    SL +R K LF  I
Sbjct: 247 FSKCANTLIKRPPRAKYQETPSPFSLFERTKGLFNII 283


>gi|308062811|gb|ADO04699.1| DNA polymerase III subunit epsilon [Helicobacter pylori Cuz20]
          Length = 287

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 84/217 (38%), Gaps = 19/217 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 132 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182
           +R   S R  L+ L +  G  I     H A  D+     ++   ++            I+
Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246

Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           F    N   +       ++T+    L +R K L   I
Sbjct: 247 FSKCANTLIKRPPRARHQETLAPFPLFERTKGLLNII 283


>gi|242077240|ref|XP_002448556.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor]
 gi|241939739|gb|EES12884.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor]
          Length = 283

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 94/203 (46%), Gaps = 17/203 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTG    ++RI+E    +L      + TFQ  + P  R     A +L+ IT E
Sbjct: 85  FLVFDLETTGFFHVDNRIVEFALRDLSGGK--DCTFQTLINPE-RDVPIYASELNNITTE 141

Query: 69  FL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDP 120
            +   D P FS +      +   + A      WIAHNAK FDV F+N E  R +      
Sbjct: 142 LVCRPDVPRFSDVLPILLAYVRSRQAPGKPVLWIAHNAKGFDVPFLNQEFDRCSAQVPSD 201

Query: 121 SRIIDTLSIARRK--HPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
              +D+L +AR+       +N  +L +L +RYG++ S    H A+ D   L ++  K+ +
Sbjct: 202 WLFVDSLRLARKLKKIDGKKNLVNLVALGERYGLS-SEGPSHRAMPDVEALCNILPKITL 260

Query: 177 GGSQINFGFKTNEDRFFKEEKKT 199
               +      NE   F + +K 
Sbjct: 261 DLK-LTCDDLMNEAMRFSDVRKA 282


>gi|293608826|ref|ZP_06691129.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|299771039|ref|YP_003733065.1| ribonuclease T [Acinetobacter sp. DR1]
 gi|292829399|gb|EFF87761.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|298701127|gb|ADI91692.1| ribonuclease T [Acinetobacter sp. DR1]
 gi|325121407|gb|ADY80930.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse
           activity) [Acinetobacter calcoaceticus PHEA-2]
          Length = 220

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 80/191 (41%), Gaps = 20/191 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G +++ D ++EI  + ++            F   + P  G     
Sbjct: 17  RFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDR 76

Query: 58  EALKLHGITD------EFLKD-KPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107
            +L   GI           +D + +   IF    +   +Q+      + HNA FD+GF+ 
Sbjct: 77  RSLDFIGIDPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFVQ 136

Query: 108 AELQRI---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A + R    N++P     ++DT++++       +  L   C + GI    +  H AL D+
Sbjct: 137 AAIARTSTKNQNPFHSFSVMDTVTLSAVMF--GQTVLAKACIQAGIEFDGKEAHSALYDT 194

Query: 165 HLLSDVYIKMM 175
              ++++  ++
Sbjct: 195 QKTAELFCYIL 205


>gi|329116348|ref|ZP_08245065.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           parauberis NCFD 2020]
 gi|326906753|gb|EGE53667.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           parauberis NCFD 2020]
          Length = 834

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 14/177 (7%)

Query: 1   MIRKNKMRKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M ++   +  V D+E T  G  +K   II++G V +++  K   T+Q  + P+    S  
Sbjct: 15  MTKEKNPKYAVIDLEATSAGTAAK---IIQVGIV-IVEGGKITNTYQTDVNPH-EDLSDH 69

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
              L GI+D+ L   P FS I    +D    ++  ++AHN KFD   +   L     +  
Sbjct: 70  IKLLTGISDQQLASAPEFSQIAGTIFDLI--KDCIFVAHNVKFDANLLAEALFFEGFELR 127

Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            P   +DT+ +A+   P   + +L  L     + +S    H A+ D+   +++ + +
Sbjct: 128 TP--RVDTVELAQVFFPHLEKYNLTYLSTELNLELSD--AHTAIADAMATANLLLVL 180


>gi|326522268|dbj|BAK07596.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 323

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 76/180 (42%), Gaps = 19/180 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG   + DRIIE    +L      N TFQ  + P       +   +HGI+  
Sbjct: 123 ILVFDIETTGFSRRGDRIIEFAVRDLTGGK--NSTFQTLINPEREV---KNAAVHGISTN 177

Query: 69  FL--KDKPSFSSIFSEFWDF-----FNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120
            +   D P F         +        +   W+AHN   FDV F+  E QR  ++    
Sbjct: 178 MVCSSDIPRFGEFIPILLQYVWSRQVAGKPVMWVAHNGKTFDVPFLIFEFQRCKQEMPGD 237

Query: 121 SRIIDTLSIARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              +DTL IA++   S     S   + +L + Y I +  +  H A+ D   L  V  K+ 
Sbjct: 238 WLFVDTLPIAKQLVDSNGKKISSASMKNLVEHYKIPVDGK-AHRAMRDVTALCYVLQKLT 296


>gi|72162746|ref|YP_290403.1| exonuclease [Thermobifida fusca YX]
 gi|71916478|gb|AAZ56380.1| exonuclease [Thermobifida fusca YX]
          Length = 313

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 76/224 (33%), Gaps = 14/224 (6%)

Query: 6   KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +   V D+ETTGL  +   R+ EI  V +       R F   + P   +      + HG
Sbjct: 28  DLEYAVVDVETTGLRPEGGARVCEIAVVRMRGDGTVLREFTTLVDP---RIKVTGQEFHG 84

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I    +   P  + + +E    F+   A  + HN  F+  F+ +E         D    +
Sbjct: 85  IAQGDVVGAPRAAELVAELCALFS--GAVVVGHNLDFENAFLTSEFVPAGLP--DGLPGL 140

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            TL   R +    R  L       G        H AL D+   + +  +++       F 
Sbjct: 141 CTLRTLRSQVHLERYSLARASHALGGDWPTGQ-HTALGDARACAQLLAELLHNAPGPLFY 199

Query: 185 FK----TNEDRFFKEEKKTVPNISLLKR-DKPLFTRITKEELDE 223
                   E+R  + + K   + +   R   P    +   EL  
Sbjct: 200 VGPEPVVLEERPQQAQLKPRRSAAGSVRLAGPRPRAVPVRELRA 243


>gi|227529584|ref|ZP_03959633.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC
           49540]
 gi|227350483|gb|EEJ40774.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC
           49540]
          Length = 178

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K      +    + D SK    F   + P         +++HGI 
Sbjct: 1   MNFVAMDFETA--NGKRYSACSLALTIVRD-SKIADEFYTLINPQT-DFFWRNVQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++D P+F  ++     F+  +    IAHN  FD   +   L      P    + +DT
Sbjct: 57  EEDVQDAPTFPEVWQHIKQFYRPEQLV-IAHNNSFDNSVLKNTLLHYGIQP-PTFQTLDT 114

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  +RR  P      LN++C    I + H   H AL D+   +++ +
Sbjct: 115 VKSSRRLIPGLDNYRLNTVCDALQIDLHHH--HNALDDAQACANILL 159


>gi|188533646|ref|YP_001907443.1| exodeoxyribonuclease X [Erwinia tasmaniensis Et1/99]
 gi|188028688|emb|CAO96550.1| DNA exonuclease X [Erwinia tasmaniensis Et1/99]
          Length = 221

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 23/169 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      I+E+ +V++++  +        + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGLQGG---IVEVASVDVING-QIANPMSDLISPD-RPISRQAMDVHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP+       +       +  ++AHNA FD   +          P      I T+++A
Sbjct: 59  RGKPTIEQAIGRYH-----GSPYYVAHNASFDRRML----------PEMNGEWICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITIS---HRSKHGALLDSHLLSDVYIKMMV 176
           RR  P  +    +L +   + +S       H AL D ++ + + +++M 
Sbjct: 104 RRLWPGLKYGNEALRQALRLDVSPPPELHAHRALYDCYVTAALLVRIMT 152


>gi|331701662|ref|YP_004398621.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri
           NRRL B-30929]
 gi|329129005|gb|AEB73558.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri
           NRRL B-30929]
          Length = 177

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   ++K      I    + D   TN  F   + P     S   + +HGI 
Sbjct: 1   MNFVAMDFETA--NAKRASACSIALAIVRDNQITNE-FYSLINPE-MDFSWRNINVHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + D P+F  ++      F+  N   IAHNA FD   +   L+R    P      +DT
Sbjct: 57  ERDVVDAPTFPEVWRHIQPLFSA-NKLVIAHNASFDNSVLKRTLERYEVQP-PHYLTLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L  +++ +P+   + LN+LC +  I + H   H AL DS   +++ +
Sbjct: 115 LRTSKQFYPTLENHKLNTLCDKLNIVLKHH--HNALDDSVACANILL 159


>gi|254443961|ref|ZP_05057437.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Verrucomicrobiae bacterium DG1235]
 gi|198258269|gb|EDY82577.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Verrucomicrobiae bacterium DG1235]
          Length = 220

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 11/171 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + FD+ETTGL  K + I +I  V  L         +F  ++ P G+       KL  + D
Sbjct: 8   VAFDLETTGLRYKQEEITQIAGVR-LGGVIMNVEDSFCTYVNP-GKPIPENIQKLTRVRD 65

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126
           E +KD P        F D+    +A    H+  +FD  FI    ++   +     R IDT
Sbjct: 66  EDVKDAPKPLEALQAFSDWVG--DATLFGHDIYRFDFNFIRKYARQEGVET-RTVRFIDT 122

Query: 127 LSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + I     P     RN L+ + +R    +S   +H A  D+ LL+ +Y ++
Sbjct: 123 MDIFEVMWPDFSRLRNSLDDIAERLSAGLSSMRRHDAQSDAILLAHIYQRI 173


>gi|301066020|ref|YP_003788043.1| DNA polymerase III subunit epsilon [Lactobacillus casei str. Zhang]
 gi|300438427|gb|ADK18193.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei str. Zhang]
          Length = 180

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      +  V ++  +K   +F   + P   +   + + +HGIT
Sbjct: 1   MDFIAMDFETA--NRKRASACSLALV-VVQQNKVVDSFYTLINPQ-MQFDAQNIHIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D+P+F  ++     F+        AHNA FDV  +   L R         ++IDT
Sbjct: 57  PEMVQDQPTFDQVWPHIQMFYTP-GRIVTAHNAPFDVSVMRLTLDRYGI-AAPRYQVIDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +  +R+  P    + L+++     I + H   H AL DS+  + + I 
Sbjct: 115 VKTSRQFLPKLPNHRLDTVSAALHIPLEHH--HNALADSYACARILIA 160


>gi|88811452|ref|ZP_01126707.1| ribonuclease T [Nitrococcus mobilis Nb-231]
 gi|88791341|gb|EAR22453.1| ribonuclease T [Nitrococcus mobilis Nb-231]
          Length = 222

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 77/195 (39%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R      +V DIET GL++  D ++++ AV +            T+   + P +G    P
Sbjct: 21  RFRSFLPVVVDIETGGLNASTDALLQLAAVIVRMDEDKRVFPAGTYSTHVEPFDGANIDP 80

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109
           ++L+ + I     L+            +              A  + HN+ FD+ F+NA 
Sbjct: 81  KSLEFNRIDPNHPLRMAKPEEEALRHIFRPIRREIRETGCTRAILVGHNSWFDLCFLNAA 140

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           + R    ++P  P    DT ++        +  L    K  G +   R  H A+ D+   
Sbjct: 141 VARTGIRRNPFHPFTSFDTATLGGLAF--GQTVLARAVKASGASWDGREAHSAIYDAEKT 198

Query: 168 SDVYIKMMVGGSQIN 182
           ++++  ++    ++N
Sbjct: 199 AELFCTIVNRWDRLN 213


>gi|284925719|gb|ADC28071.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 256

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 7/147 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIE+TG  SK   I+EIGAV++ +  +  R FQ F+    ++      +L GIT E
Sbjct: 72  FCIVDIESTGGVSKG-EILEIGAVKIQNSKEIGR-FQSFVK--VKEIPKNITELTGITYE 127

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++  S + + S+F  F   +++ ++AHN +FD  FI+  L       L  +R I T+ 
Sbjct: 128 MVENASSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILL-NRRICTIE 184

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155
            A+    S +  L  L +  G+  +H 
Sbjct: 185 FAQCCIESPKYKLEVLKEFLGVENTHH 211


>gi|225850393|ref|YP_002730627.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
 gi|225646485|gb|ACO04671.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
          Length = 206

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 13/179 (7%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLH 63
           NK+    FD+ETTGLD + D II IGAV++ +      T F   + P  R    E + +H
Sbjct: 31  NKITFCSFDLETTGLDVEKDEIISIGAVKIKEMKIDLSTSFYRIVKPE-RIPEKENILIH 89

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSR 122
            IT   +K       +  +F ++   +    I +   FD+  ++   Q+      L+P  
Sbjct: 90  SITASEMKKGEDIRDVLPKFLEYI--KGTVLIGYFVSFDISMLSKYTQKFYGFPILNPYI 147

Query: 123 IIDTLSIARR------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +  L I ++              L+ + +   I +  R +H AL DS   + +++ +M
Sbjct: 148 DVSQLYIKKKVKSYTPYEKIKEKSLDQIAEELNIPV--RKRHNALYDSITTALIFLSLM 204


>gi|295095557|emb|CBK84647.1| Exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 220

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET  L      I+E+ +V+++D    N      + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCDLQGG---IVEVASVDVIDGKIVNPMSH-LVRPD-RPISAQAMAIHRITESMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I           +  ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPWIEEIIP-----LYHGSQWYVAHNASFDRRVL----------PEMPGEWICTMKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   +++        H AL D ++ + + I +M
Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVRTPEGLHHHRALYDCYITAALLIDIM 151


>gi|257870106|ref|ZP_05649759.1| exonuclease [Enterococcus gallinarum EG2]
 gi|257804270|gb|EEV33092.1| exonuclease [Enterococcus gallinarum EG2]
          Length = 180

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + +      +  V + D       +   + P       + +++HGI 
Sbjct: 4   MNFIAMDFETA--NYQKHSACSLALVMVRDSKIVGE-YYTLIQPET-DFFWKNIQIHGIH 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E + + P F  I+ +   ++N  N+  +AHNA FD G +   L     +       + T
Sbjct: 60  PEDVVNAPKFPDIWKQIQQYYNL-NSLIVAHNAGFDTGVLAGCLDYYGIEQ-PNYLSLCT 117

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +  +R+ +P    + LN++C++  I + +   H AL DS   + + ++
Sbjct: 118 VRTSRKLYPEFENHKLNTVCQQLQIPLLNH--HDALEDSRACAQILLR 163


>gi|326803355|ref|YP_004321173.1| putative DNA polymerase III, epsilon subunit [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650663|gb|AEA00846.1| putative DNA polymerase III, epsilon subunit [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 173

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 14/171 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTGL   + +II+I AV   D  +    F   + P+ R    +  +L GI+D 
Sbjct: 13  YVAFDLETTGL-GFSSKIIQISAVHFRDGKEIG-AFDQLVNPD-RPIPAKITQLTGISDA 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +   P+   +  +F  F   ++     +N  KFD+  + A         L     +D L
Sbjct: 70  DVYLSPTIDQVIHDFMAFI--KDLPLAGYNSKKFDIPMLRANT----GIDLSGLPHMDVL 123

Query: 128 SIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +AR     +    L ++   YGI       H +L DS   + +  +   G
Sbjct: 124 EMARLSPIRTPNYKLTTVKAHYGIQN---RAHDSLNDSRATALILEEFRKG 171


>gi|42518811|ref|NP_964741.1| hypothetical protein LJ0886 [Lactobacillus johnsonii NCC 533]
 gi|41583097|gb|AAS08707.1| hypothetical protein LJ_0886 [Lactobacillus johnsonii NCC 533]
          Length = 177

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET     ++     +  V + +    +R F   + P         +K+HGIT
Sbjct: 1   MNFTAMDFETANSHPESA--CSLALVMVRNNEIVDR-FYTVINPQ-MPFDGRNIKIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K+ P+ + ++ +      +      AHNA+FD   +   L R N  P      IDT
Sbjct: 57  AEDVKNAPTMAEVWPKIKK-LYQPGMLVAAHNARFDCRVMEKSLARYNI-PAPHYFAIDT 114

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L+ ++   P    + L+++ +   I + H   H AL DS   + + I+
Sbjct: 115 LATSKAFEPYLPNHKLDTVSEALNINLWHH--HNALSDSEACAGILIE 160


>gi|38234148|ref|NP_939915.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200410|emb|CAE50098.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           diphtheriae]
          Length = 448

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 11/170 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS--PEALKLHGIT 66
            +  D+ETT  +S    I +IGA ++ D      T +    P G  NS     + +HGIT
Sbjct: 105 FVAVDVETT--NSDWGSICQIGAAKVRDGH-VVETKEWLCTPPGDLNSFDEANIAIHGIT 161

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +   PSF+  + +F DF    +    AHNA+FD+       Q  +   L  +    +
Sbjct: 162 ADMVATAPSFAECYDQFADFAG--DLPLAAHNAQFDMTAFLRATQAADIR-LRTTNFGCS 218

Query: 127 LSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L+ AR  H P + + L ++ +   + +  R+ H A  D+   + + I + 
Sbjct: 219 LAAARAAHLPIANHKLPTVSQHLHVEL--RNHHNACADAEACAGILIALT 266


>gi|116494505|ref|YP_806239.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei ATCC 334]
 gi|227535524|ref|ZP_03965573.1| DNA-directed DNA polymerase III [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239631264|ref|ZP_04674295.1| DNA polymerase III alpha chain protein [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|116104655|gb|ABJ69797.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei ATCC 334]
 gi|227186846|gb|EEI66913.1| DNA-directed DNA polymerase III [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239525729|gb|EEQ64730.1| DNA polymerase III alpha chain protein [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 180

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      +  V ++  +K   +F   + P   +   + + +HGIT
Sbjct: 1   MDFIAMDFETA--NRKRASACSLALV-VVQQNKVVDSFYTLINPQ-MQFDAQNIHIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D+P+F  ++     F+        AHNA FDV  +   L R         ++IDT
Sbjct: 57  PEMVQDQPTFDQVWPHIQMFYTP-GRIVTAHNAPFDVSVMRLTLDRYGI-AAPRYQVIDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +  +R+  P    + L+++     I + H   H AL DS+  + + I 
Sbjct: 115 VKTSRQFLPKLPNHRLDTVSAALHIPLEHH--HNALADSYACARILIA 160


>gi|325963971|ref|YP_004241877.1| DNA polymerase III subunit epsilon [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470058|gb|ADX73743.1| DNA polymerase III, epsilon subunit [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 236

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 96/231 (41%), Gaps = 21/231 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   N + +  FD+ETTG +S+  RI+   +V ++D+         +L   G +   EA 
Sbjct: 1   MSTWNTLPRAAFDLETTGRNSRAARIVT-ASVTVVDHQAEVMREHEWLADPGVEIPTEAS 59

Query: 61  KLHGITDEFLK--DKPSFS---SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            +HGIT E  +   +P+      + +   + F + N   IA NA +D   + AE  R   
Sbjct: 60  DVHGITTEQARREGRPAHEVTREVAAALQELF-DSNIPVIAFNASYDFTVLAAESARYGI 118

Query: 116 DPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L    ++D   + ++  ++   +  L +LC+ YG+ + +   H +  D+     V   
Sbjct: 119 PQLTRFPVLDPYIMNKQVDRYRKGKRTLTALCEEYGVVLDN--AHTSAADALATLRVLDA 176

Query: 174 MMVGG----------SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214
           M               Q+   +  ++   F+   +     ++++ D P+  
Sbjct: 177 MAGKFPKLSMPASQLHQLQVDWAVSQAADFQGYLRKTKPAAVIEGDWPVLP 227


>gi|224373300|ref|YP_002607672.1| DNA polymerase III PolC-type [Nautilia profundicola AmH]
 gi|223589694|gb|ACM93430.1| DNA polymerase III PolC-type [Nautilia profundicola AmH]
          Length = 255

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 8/172 (4%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++    V DIE         ++IEIGAV++ +  K   TF+  +    +       ++ G
Sbjct: 62  DEFEYCVVDIEVNNSKPNIGQVIEIGAVKIKN-LKIVDTFEFLI--YAKDVPKYVERVTG 118

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I  E LK++ S   I  +F  F  E  + ++AH A FD  F+  + ++ N   +  +R +
Sbjct: 119 INQEMLKNEASQKEILRKFRLFLGE--SVFVAHAADFDYNFLAHQFEKENLGEIL-NRFL 175

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            TL+++++   + R  L  L +   +     + H AL D+   + +++  + 
Sbjct: 176 CTLTLSQKTLEAERYGLKYLMEELKLP--EETHHRALGDAKTTARIFLMCLE 225


>gi|170739960|ref|YP_001768615.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
 gi|168194234|gb|ACA16181.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 186

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 10/179 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR +  D ET   + + D    +G +  ++  +  R     + P   + SP  +++HGI 
Sbjct: 1   MRTLAIDFETA--NERRDSACAVG-LAWIEDGRVVRREARLIRPPDLRFSPFNIRVHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E + D   F    + F        A  +AHNA FDVG + A L      P      + T
Sbjct: 58  PEDVADAKPFGEAMAPFLPEIA--GALVLAHNASFDVGVLCAALAACGL-PRPRFTSLCT 114

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           + +ARR+ P   R  L  L +R GI + H   H A  D+   + + +  M      +  
Sbjct: 115 VQLARRQWPGEARYRLPILAERLGIPLRH---HDAGEDAFACAQIALAAMREAGAPDLA 170


>gi|85059419|ref|YP_455121.1| ribonuclease T [Sodalis glossinidius str. 'morsitans']
 gi|84779939|dbj|BAE74716.1| ribonuclease T [Sodalis glossinidius str. 'morsitans']
          Length = 234

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 23/224 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++  D ++EI AV L      + + + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAVTDALLEIAAVTLKMDDDGWLQADSTLHFHVDPFPGALLQP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +   IF        +Q       +AHNA FD GF+ A 
Sbjct: 73  EALAFNGIDPHNPLRGAVGEYEALHEIFKMVRKGIKDQGCNRAIIVAHNAAFDHGFLMAA 132

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           + R    ++P  P    DT +++       +  L   C   GI  +    H AL D+   
Sbjct: 133 VSRAGLKRNPFHPFATFDTAALSGLVL--GQTVLAKACAAAGIAFNSGEAHSALYDTERT 190

Query: 168 SDVYIKMM-----VGGSQINFGFKTN-EDRFFKEEKKTVPNISL 205
           + ++ +++     +GG  +      + E+     + +  P + L
Sbjct: 191 ATLFCELVNRWKRLGGWPVAMPAPGDAEEEAVAAQDRANPTLDL 234


>gi|317503311|ref|ZP_07961361.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
 gi|315665570|gb|EFV05187.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
          Length = 286

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 78/176 (44%), Gaps = 11/176 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    K   +VFD+ETTGLD  NDRII++  +++    K  R     + P GR       
Sbjct: 1   MKLNLKKPLVVFDLETTGLDIVNDRIIQLSFIKVYPDGKEERGDH-LINP-GRHIPEMIT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
           +L GI DE +KD PSF  I +   + F  +  ++   N  +FDV  +  E  R   D   
Sbjct: 59  ELTGIDDEKVKDAPSFKQISTTLAETF--KGCDFAGFNSNRFDVPMLAEEFLRAGIDFDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYI 172
              R+ID  +I    H   R +L +  K Y G  +      H A  D+     V +
Sbjct: 117 SKCRLIDAQAI---FHKMERRNLAAAYKFYCGRKMEEDFEAHRADQDTEATYRVLM 169


>gi|257895239|ref|ZP_05674892.1| exonuclease [Enterococcus faecium Com12]
 gi|257897861|ref|ZP_05677514.1| exonuclease [Enterococcus faecium Com15]
 gi|293377229|ref|ZP_06623434.1| exonuclease [Enterococcus faecium PC4.1]
 gi|257831804|gb|EEV58225.1| exonuclease [Enterococcus faecium Com12]
 gi|257835773|gb|EEV60847.1| exonuclease [Enterococcus faecium Com15]
 gi|292644090|gb|EFF62195.1| exonuclease [Enterococcus faecium PC4.1]
          Length = 177

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET      +     +  V + +    +  F   + P         +++HGI 
Sbjct: 1   MNFVAMDFETANHQPYSA--CSLALVMVKNSQIVDE-FYTLIQPET-PFFWRNVQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +++ P F  ++     +F ++N   +AHNA FD   +   L   + +       + T
Sbjct: 57  QEDVRNAPKFPEVWQTIQPYF-QKNLLVVAHNAAFDTKVLAGCLDYYHLEQ-PNYLSLCT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  +RR  P    + LN++C+   I + H   H AL DS   +++ +
Sbjct: 115 VKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 159


>gi|153820610|ref|ZP_01973277.1| DNA polymerase III epsilon subunit [Vibrio cholerae NCTC 8457]
 gi|126508846|gb|EAZ71440.1| DNA polymerase III epsilon subunit [Vibrio cholerae NCTC 8457]
          Length = 136

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 8/138 (5%)

Query: 106 INAELQRINK---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           ++ E  ++        D  ++ DTL++A+R  P  RN+L+ LC+RYGI  SHR+ HGALL
Sbjct: 1   MDYEFAKLGGAIGKTSDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALL 60

Query: 163 DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
           D+ +L+DVY+ M  G + + F   T        E       +  +R        + +EL 
Sbjct: 61  DAEILADVYLLMTGGQTSLQFSSVTQNSGELSAESLKR---ARSERKALKVLAASADELQ 117

Query: 223 EHDKTIQTLGKN--AIWD 238
            H   +  + K+   +W 
Sbjct: 118 AHQDRLDIVAKSGTCLWR 135


>gi|300361318|ref|ZP_07057495.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           gasseri JV-V03]
 gi|300353937|gb|EFJ69808.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           gasseri JV-V03]
          Length = 177

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET     ++     +  V + +    +R F   + P         +++HGIT
Sbjct: 1   MNFTAMDFETANSHPESA--CSLALVMVRNNEIVDR-FYTVINPQ-MPFDGRNIRVHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K+ P+ + ++ +      +      AHNA+FD   +   L R N  P      IDT
Sbjct: 57  AEDVKNAPTMAEVWPKIKK-LYQPGMLVAAHNARFDCRVMEKSLARYNI-PAPHYFAIDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L+ ++   P    + L+++ +   I + H   H AL DS   + + I+
Sbjct: 115 LATSKAFEPDLPNHKLDTVSEALNINLWHH--HNALSDSEACAGILIE 160


>gi|269926118|ref|YP_003322741.1| DNA polymerase III, epsilon subunit [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789778|gb|ACZ41919.1| DNA polymerase III, epsilon subunit [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 960

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 13/164 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+E TG D + D II+IGAV+        R +   + P   K      +L GI   
Sbjct: 7   FVALDLEMTGHDPEQDEIIQIGAVKFTQTRVLGR-WGTLVRPK-VKLPFRIARLTGINPN 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F ++  +   F  +     + H+   D+ F+  +   +       +  +DT  
Sbjct: 65  DLNKAPVFDAVKDKLRSFVGDH--PIVGHSIGNDLSFLAKQGLAL------DNPSLDTWE 116

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +A    PS     L  +    G+++ +   H AL D+ +   V+
Sbjct: 117 LAMLLMPSLNAYSLQGVASALGVSVDNH--HDALADAEITRQVF 158


>gi|148656137|ref|YP_001276342.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1]
 gi|148568247|gb|ABQ90392.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1]
          Length = 233

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 81/188 (43%), Gaps = 17/188 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLC-PNGRKNSPEA 59
           +    +   V D+ETTGL+ + D ++ IG V++ D     ++ +   +  P+    +PEA
Sbjct: 31  LPWRDVPYSVIDVETTGLNPRRDALLAIGLVDIDDGRIRMDQRWYTLVRPPDDAPVNPEA 90

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HG+  + ++  P    +          +    + H A  D+GF+   L+R+      
Sbjct: 91  IRVHGLLPQDVEQAPPPGDVLPVLLRRLTGR--VLVVHVADIDIGFLRQALRRL-YQVDP 147

Query: 120 PSRIIDTLSIARRKHPSSR----------NDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
               IDT  +A     + R            L +L +  G+ +   ++H AL D+   + 
Sbjct: 148 RGPAIDTARLAWHFQRNQRLIDGADQEPALQLRALAESAGLPVY--AEHNALNDALTTAQ 205

Query: 170 VYIKMMVG 177
           V++  +  
Sbjct: 206 VFLAQINA 213


>gi|11498577|ref|NP_069805.1| DNA polymerase III, subunit epsilon (dnaQ) [Archaeoglobus fulgidus
           DSM 4304]
 gi|2649627|gb|AAB90271.1| DNA polymerase III, subunit epsilon (dnaQ) [Archaeoglobus fulgidus
           DSM 4304]
          Length = 205

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 19/192 (9%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
             K++ +  D+ETTGL+ K D II IGAV ++        ++   L P   K+  E++K 
Sbjct: 5   LRKVQFLSIDLETTGLNQKKDEIIAIGAVPIIGTRILAGESYYRLLRPEKFKH--ESMKF 62

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK------- 115
           HG+    LK    FS I  E  D    +    + +  + D GF+   L+R          
Sbjct: 63  HGLDPARLKTAHDFSEIAEEVADLL--RGKVLVGYAIELDYGFLKRALKREGYKVENKRI 120

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D +D  + +  +   R   P     L++L K+Y + +S+R  H AL D+ + + ++   +
Sbjct: 121 DVIDFEKAVCYILGER---PVGEMTLDNLAKKYRVEVSYR--HNALADAFITAQIFQVQL 175

Query: 176 VGGSQINFGFKT 187
           +    + +G KT
Sbjct: 176 L--KILKYGIKT 185


>gi|297243541|ref|ZP_06927472.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella
           vaginalis AMD]
 gi|296888292|gb|EFH27033.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella
           vaginalis AMD]
          Length = 338

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 20/182 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC---------PNGRKNSPEA 59
            +V D ETTGL+SK D+IIEIGAV+ +D       FQ  +                  E 
Sbjct: 157 FVVIDCETTGLNSKVDKIIEIGAVKFIDGKI--EEFQKLININCDSVSNFNKNNFIPNEI 214

Query: 60  LKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP- 117
           ++L GIT   L+           EF DF   +    + +N +FD+ F+N+ L  +++   
Sbjct: 215 IELTGITSNMLESYGVRLDLALKEFIDFV--EKLPVLGYNVQFDMSFLNSALSSLDERFD 272

Query: 118 --LDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             L  ++I D     +++    +N  L ++   Y I  +    H ALLD+ L + +   +
Sbjct: 273 HSLSINKIFDISRFVKKEKKFLKNYKLKTVLHEYNI--AESVPHRALLDARLTAHLVFNL 330

Query: 175 MV 176
             
Sbjct: 331 TE 332


>gi|326314849|ref|YP_004232521.1| DNA-directed DNA polymerase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323371685|gb|ADX43954.1| DNA-directed DNA polymerase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 222

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 9/154 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  E+  V + +    +R FQ  +   G    P  ++L GIT
Sbjct: 5   RIAVIDFETTGMTPSQGARATEVAIVLMEEGRPVDR-FQSLMK-TGAWLPPFIVQLTGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L   P   S+  E   F    +A  +AHNA FD  F  AEL R   D   P     T
Sbjct: 63  PAMLDTAPPAESVMREAARFVG--DAPMVAHNASFDSRFWAAELARA--DLPSPHAFACT 118

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHG 159
           + ++RR +P +  + L  +    G+  + R  H 
Sbjct: 119 VLLSRRLYPEATSHQLGRIVAHLGLPPAAR-AHR 151


>gi|220935624|ref|YP_002514523.1| ribonuclease T [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996934|gb|ACL73536.1| ribonuclease T [Thioalkalivibrio sp. HL-EbGR7]
          Length = 216

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 82/188 (43%), Gaps = 17/188 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G + + D ++++ AV L    +     ++T    + P  G    P
Sbjct: 13  RFRGFLPVVVDVETGGFNPRTDALLQVAAVLLRMDPEGQLYRHQTLSFHVQPFEGANLDP 72

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAE 109
           ++L+++GI     L+         +  +    E+        A  + HNA FD+ FI+  
Sbjct: 73  KSLEVNGINPWHPLRIAHPEKDALATVFRGVREEMKLNACKRAILVGHNAGFDLSFIHQG 132

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    ++P  P   +DT++++       +  L    +  G+  S+   H A+ D+   
Sbjct: 133 AERAGLKRNPFHPFSSLDTVTLSAMAF--GQTVLARAVQAAGMEWSNSEAHSAVYDAEKT 190

Query: 168 SDVYIKMM 175
           +D++  ++
Sbjct: 191 ADLFCHVI 198


>gi|251772732|gb|EES53294.1| DNA polymerase III, epsilon subunit [Leptospirillum
           ferrodiazotrophum]
          Length = 288

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 9/164 (5%)

Query: 10  IVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+ETTGL  +ND RI+EIG      +    R     + P G    P   ++HGI D 
Sbjct: 32  LFVDVETTGLLFENDARIVEIGISVWDSFGLKER-MTSLINP-GSPIPPMYTRIHGIDDV 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+F   + E  +    Q    IAHN  FD+G IN EL R +  PL  +  IDT+ 
Sbjct: 90  MVEHSPTFLEFWME--NGIRFQGKVVIAHNLSFDMGMINRELMRRDMAPLG-NPGIDTVP 146

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           I +   P  + + L+ L K  G+   H S+H A  D   L  V 
Sbjct: 147 ILKSLLPREKNHKLSHLAKSLGVR--HDSRHRAEDDVAALEQVL 188


>gi|330685586|gb|EGG97232.1| exonuclease [Staphylococcus epidermidis VCU121]
          Length = 184

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 9/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + K   I  +G V++++   T  +F   + PN    S + + +HGI  E
Sbjct: 6   FVALDFETA--NGKRTSICSVGMVKVIENQIT-ESFHTLVNPNDY-FSEQNISVHGIHPE 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+FS ++     F ++     +AHNA FD+  ++  +Q I  +         +  
Sbjct: 62  DVASSPNFSYVYPYMMQFIDQ--LPVVAHNAAFDMNVLHQSIQAIGLET-PHLTYFCSYQ 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+R   S R  L  +   Y +       H AL D+   + +  +++
Sbjct: 119 LAKRTVQSHRYGLKHMMDYYQLDF--HGHHDALNDAKACAMITFRLL 163


>gi|329667640|gb|AEB93588.1| DNA-directed DNA polymerase III [Lactobacillus johnsonii DPC 6026]
          Length = 177

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET     ++     +  V + +    +R F   + P         +++HGIT
Sbjct: 1   MNFTAMDFETANSHPESA--CSLALVMVRNNEIVDR-FYTVINPQ-MPFDGRNIRIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K+ P+ + ++ +      +      AHNA+FD   +   L R N  P      IDT
Sbjct: 57  AEDVKNAPTMAEVWPKIKK-LYQPGMLVAAHNARFDCRVMEKSLARYNI-PAPHYFAIDT 114

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L+ ++   P    + L+++ +   I + H   H AL DS   + + I+
Sbjct: 115 LATSKAFEPYLPNHKLDTVSEALNINLWHH--HNALSDSEACAGILIE 160


>gi|32491084|ref|NP_871338.1| ribonuclease T [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
 gi|30173142|sp|Q8D2L9|RNT_WIGBR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|25166291|dbj|BAC24481.1| rnt [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 215

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 82/197 (41%), Gaps = 20/197 (10%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    +V D+ET G D   D ++EI  + L      + + +      + P  G   
Sbjct: 12  KNRFRGFYPVVIDVETAGFDPYRDALLEIAIITLRMDDNGFLRIDNKLHFNIIPTPGLNI 71

Query: 56  SPEALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107
              ALK + I         + ++ +   IF+       +Q+      +AHNA FD  F+ 
Sbjct: 72  KKSALKFNKIDPYNPFRAAINERKAIKEIFNTVRLGIKKQSCSKAVVVAHNAYFDHSFLM 131

Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           + + R  I  +P       DT +++       +  L+  C   GI  ++   H AL DS 
Sbjct: 132 SAVDRSKIKYNPFHSFSTFDTATLSGLVL--GQTVLSKACIIAGIEFNNNYAHSALYDSK 189

Query: 166 LLSDVYIKMMVGGSQIN 182
             ++++ +++    ++ 
Sbjct: 190 KTAELFCEIVNRWKKMG 206


>gi|291513942|emb|CBK63152.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Alistipes shahii WAL 8301]
          Length = 255

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 13/178 (7%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           ++ N  R I+F D+ETTG+D+  DRI+EI  V+++ D  +  +T    L P G     EA
Sbjct: 1   MKLNLKRPIIFFDLETTGVDTARDRIVEISMVKVMPDGEEITKT--RRLNP-GMHIPEEA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-P 117
             +HGITD+ ++D P+F+ +      F   +  ++   N  +FD+  +  E  R   D  
Sbjct: 58  SAIHGITDDDVRDCPTFAQVARSLEQFI--RGCDFGGFNSNRFDLPVLVEEFLRAGVDVD 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               + ID  +I    H   +  L +  K Y         H A  D+    +V    +
Sbjct: 116 FKRRKFIDVQNI---FHKKEQRTLVAAYKFY-CDKDLEEAHSAEADTKATYEVLKAQL 169


>gi|330822675|ref|YP_004385978.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601]
 gi|329308047|gb|AEB82462.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601]
          Length = 209

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 9/153 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTG+   +  R  E+  V L++  +    F   +   G    P   +L GIT+
Sbjct: 5   IAVIDFETTGMTPAQGARATEVAIV-LMEGERVVDRFASLMK-TGVWIPPFITRLTGITN 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P+  S+  E   F    +A  +AHNA FD  F  +EL+    D   P     T+
Sbjct: 63  AMVDAAPAAESVMREAARFVG--DAPMVAHNAAFDSRFWQSELRHAGLDAPHPFA--CTV 118

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHG 159
            ++RR +P    + L  L    G+  + R  H 
Sbjct: 119 LLSRRIYPDAPSHSLGRLTDHLGLPRTGR-AHR 150


>gi|118602537|ref|YP_903752.1| ribonuclease T [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567476|gb|ABL02281.1| RNAse T [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 195

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 84/191 (43%), Gaps = 19/191 (9%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NG 52
           M+ K+++R    +V D ET G + K D ++EI A+    + ++      +    + P  G
Sbjct: 1   MLIKDRIRGYLPVVIDTETGGFNEKTDAMLEICAIVIGIDKMNNLYPKGSQHFHIEPFKG 60

Query: 53  RKNSPEALKLHGIT-----DEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVG 104
                 ALK +GI         +K+  +   I+++ +    +++      + HNA FD+G
Sbjct: 61  GMLESSALKFNGIDVDNPFRMAVKEIDAIKQIYTKVYAELKQESCTRAILVGHNAFFDLG 120

Query: 105 FINAELQRINKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F++A   R     P      +DT+S++   +      L    ++  I       H AL D
Sbjct: 121 FLHAATDRCKLKSPFHQFSTLDTVSLSALHY--GETVLAKAMRKANIEWDDSCAHSALYD 178

Query: 164 SHLLSDVYIKM 174
           +   ++++ K+
Sbjct: 179 TQKTAELFCKI 189


>gi|162447750|ref|YP_001620882.1| DNA polymerase III subunit epsilon [Acholeplasma laidlawii PG-8A]
 gi|161985857|gb|ABX81506.1| DNA polymerase III, epsilon subunit [Acholeplasma laidlawii PG-8A]
          Length = 227

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 84/177 (47%), Gaps = 14/177 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-----FLCPNGRKNS 56
           ++    + +VFD ETTGL  K D++IE+GAV L    K   T+++     +L       +
Sbjct: 1   MKLEYKKILVFDFETTGLTPKRDKVIEVGAVLL---EKIGDTYEIVQEIDYLIKQQTPIT 57

Query: 57  PEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-N 114
                L GIT+E L +D       F +  +   +++   +A+N  FD+GF++A  Q    
Sbjct: 58  DFISNLTGITNEMLARDGVEEEYAFRQLDNLI-DEDTLLVAYNLAFDIGFLSALYQTYVA 116

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +    + I+D +++ + ++P   + L +   R+   +S+   H A  D+     V 
Sbjct: 117 HNYKIQNDILDCMAVYKDRYP-YPHKLENAVARF--ELSNNQAHRASEDAKATFKVL 170


>gi|260592337|ref|ZP_05857795.1| exonuclease [Prevotella veroralis F0319]
 gi|260535724|gb|EEX18341.1| exonuclease [Prevotella veroralis F0319]
          Length = 283

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 87/215 (40%), Gaps = 15/215 (6%)

Query: 2   IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  +  IVFD+ETTGLD   DRII+I  +++    K  R    F+ P G+       
Sbjct: 1   MKLNLTKPLIVFDLETTGLDLVADRIIQISYIKVYADGKEERE-NFFINP-GKHIPTIVT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
           +L GI+DE + D P+F     E  D       ++   N  +FDV  +  E  R   D   
Sbjct: 59  ELTGISDEDVADAPTFKQKAKELAD--KFAGCDFAGFNSNRFDVPMLAEEFLRAGIDFDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVY---IK 173
              R+ID  +I    H   R +L +  K Y G  +      H A  D+     V    + 
Sbjct: 117 SKCRLIDAQNI---YHKMERRNLAAAYKFYCGRKMEEDFVAHRADQDTEATWRVLQGEVA 173

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
           M   G+Q       N+     E  +    +    R
Sbjct: 174 MYAPGNQEEERALNNDMDELAEFSRMNDFVDFAGR 208


>gi|289755840|ref|ZP_06515218.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon
           [Mycobacterium tuberculosis EAS054]
 gi|289696427|gb|EFD63856.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon
           [Mycobacterium tuberculosis EAS054]
          Length = 330

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 25/214 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T  
Sbjct: 16  WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAA 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D+P F+ I  E  D    +    +AHN  FD  F+ AE +   +  L    ++ T+ 
Sbjct: 73  MLDDQPQFADIAGEVVDVL--RGRTLVAHNVAFDYAFLAAEAEIA-EAELPVDFVMCTVE 129

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +G+    +  H A  D+ +L+ +    +    +++     
Sbjct: 130 LARRLQLGVDNLRLETLAAHWGVP--QQRPHDAFDDARVLTGILAAALESARELDVWL-- 185

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
                        P   + +R  P   R+T +EL
Sbjct: 186 -------------PVHPVTRRRWP-NGRVTHDEL 205


>gi|215432688|ref|ZP_03430607.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           EAS054]
          Length = 347

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 25/214 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T  
Sbjct: 16  WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAA 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D+P F+ I  E  D    +    +AHN  FD  F+ AE +   +  L    ++ T+ 
Sbjct: 73  MLDDQPQFADIAGEVVDVL--RGRTLVAHNVAFDYAFLAAEAEIA-EAELPVDFVMCTVE 129

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +G+    +  H A  D+ +L+ +    +    +++     
Sbjct: 130 LARRLQLGVDNLRLETLAAHWGVP--QQRPHDAFDDARVLTGILAAALESARELDVWL-- 185

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
                        P   + +R  P   R+T +EL
Sbjct: 186 -------------PVHPVTRRRWP-NGRVTHDEL 205


>gi|257879256|ref|ZP_05658909.1| exonuclease [Enterococcus faecium 1,230,933]
 gi|257881926|ref|ZP_05661579.1| exonuclease [Enterococcus faecium 1,231,502]
 gi|257886420|ref|ZP_05666073.1| exonuclease [Enterococcus faecium 1,231,501]
 gi|257892035|ref|ZP_05671688.1| exonuclease [Enterococcus faecium 1,231,410]
 gi|257894890|ref|ZP_05674543.1| exonuclease [Enterococcus faecium 1,231,408]
 gi|258617178|ref|ZP_05714948.1| exonuclease [Enterococcus faecium DO]
 gi|260558702|ref|ZP_05830891.1| exonuclease [Enterococcus faecium C68]
 gi|261208809|ref|ZP_05923246.1| exonuclease [Enterococcus faecium TC 6]
 gi|289567393|ref|ZP_06447761.1| exonuclease [Enterococcus faecium D344SRF]
 gi|293554053|ref|ZP_06674651.1| exonuclease [Enterococcus faecium E1039]
 gi|293559453|ref|ZP_06675990.1| exonuclease [Enterococcus faecium E1162]
 gi|293567360|ref|ZP_06678710.1| exonuclease [Enterococcus faecium E1071]
 gi|293571424|ref|ZP_06682452.1| exonuclease [Enterococcus faecium E980]
 gi|294616820|ref|ZP_06696561.1| exonuclease [Enterococcus faecium E1636]
 gi|294620071|ref|ZP_06699426.1| exonuclease [Enterococcus faecium E1679]
 gi|294622945|ref|ZP_06701839.1| exonuclease [Enterococcus faecium U0317]
 gi|257813484|gb|EEV42242.1| exonuclease [Enterococcus faecium 1,230,933]
 gi|257817584|gb|EEV44912.1| exonuclease [Enterococcus faecium 1,231,502]
 gi|257822276|gb|EEV49406.1| exonuclease [Enterococcus faecium 1,231,501]
 gi|257828395|gb|EEV55021.1| exonuclease [Enterococcus faecium 1,231,410]
 gi|257831269|gb|EEV57876.1| exonuclease [Enterococcus faecium 1,231,408]
 gi|260075161|gb|EEW63474.1| exonuclease [Enterococcus faecium C68]
 gi|260077311|gb|EEW65031.1| exonuclease [Enterococcus faecium TC 6]
 gi|289160818|gb|EFD08750.1| exonuclease [Enterococcus faecium D344SRF]
 gi|291589962|gb|EFF21760.1| exonuclease [Enterococcus faecium E1071]
 gi|291590326|gb|EFF22094.1| exonuclease [Enterococcus faecium E1636]
 gi|291593687|gb|EFF25206.1| exonuclease [Enterococcus faecium E1679]
 gi|291597644|gb|EFF28801.1| exonuclease [Enterococcus faecium U0317]
 gi|291601744|gb|EFF31998.1| exonuclease [Enterococcus faecium E1039]
 gi|291606515|gb|EFF35912.1| exonuclease [Enterococcus faecium E1162]
 gi|291608496|gb|EFF37790.1| exonuclease [Enterococcus faecium E980]
          Length = 177

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET      +     +  V + +    +  F   + P         +++HGI 
Sbjct: 1   MNFVAMDFETANHQPYSA--CSLALVMVKNSQIVDE-FYTLIQPET-PFFWRNVQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +++ P F  ++     +F ++N   +AHNA FD   +   L   + +       + T
Sbjct: 57  QEDVRNAPKFPEVWQTIQPYF-QKNRLVVAHNAAFDTKVLAGCLDYYHLEQ-PNYLSLCT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  +RR  P    + LN++C+   I + H   H AL DS   +++ +
Sbjct: 115 VKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 159


>gi|260587155|ref|ZP_05853068.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
 gi|260542350|gb|EEX22919.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
          Length = 244

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 14/176 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLC-PNGRKNSPEALKLHG 64
           + FD ETTGL++++ +IIE+ A+ +    +       +  VF+  P G +   + ++L G
Sbjct: 15  VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQKIVELTG 74

Query: 65  ITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           ITDE L+ +  + +   + F +         +AHNA+FD+ F    L+R      +  + 
Sbjct: 75  ITDEQLENEGITEAEAAARFTELIGGGRVLLVAHNAQFDLLFTAEMLRRHGNGGPEALKA 134

Query: 124 ID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D     T+   RR +P   + L +    Y +    ++ H A+ D   L +V   M
Sbjct: 135 ADYLDSLTVYKDRRAYP---HKLANAILTYKLEDKVQNSHRAIDDVAALFEVCKAM 187


>gi|313681496|ref|YP_004059234.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154356|gb|ADR33034.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 267

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 7/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + D+E+ G    + +IIEIGAV+L +    + T++  +       S +  ++ GI  E
Sbjct: 65  FCIVDVESNGSKPAHHQIIEIGAVKLQNGKIID-TYESLV--YCTDISDQIQEITGIKTE 121

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P+ S +  EF  F    +A ++ H+AKFD  F++A ++R+    L  +R + T+ 
Sbjct: 122 QTLKAPAMSKVMREFRLFLG--DAIFVGHDAKFDYNFVSAMMERVGLSKLL-NRSLCTID 178

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A R   S R  L  L     +     + H AL D+   + +  +++
Sbjct: 179 LAERTIESERYGLAYLNTALEL-YKEATHHRALSDAMTTTKLLKRVL 224


>gi|332637276|ref|ZP_08416139.1| DNA-directed DNA polymerase III subunit epsilon [Weissella cibaria
           KACC 11862]
          Length = 177

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET    ++    + +  V + D    +  F   + P          K+HGIT
Sbjct: 1   MNFVAMDFETA--SAQRHSAVSMALVVVRDNILVDE-FYTLIKPESY-FDARNTKIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + D P F  ++ +   F+   N   IAHNA FD G +   L             +DT
Sbjct: 57  EADVVDAPKFPEVWEQIKQFYTA-NQLVIAHNAPFDNGVLRETLGHYGISA-PHYLSLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  +R+ +P    + LN++     I + H   H AL D+   + + +
Sbjct: 115 VRTSRKLYPQLPNHKLNTVADALQIDLKHH--HNALDDTVAAARILV 159


>gi|229496202|ref|ZP_04389922.1| exonuclease [Porphyromonas endodontalis ATCC 35406]
 gi|229316780|gb|EEN82693.1| exonuclease [Porphyromonas endodontalis ATCC 35406]
          Length = 258

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 12/178 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  + K   + FDIE+TGL  + DRI+EI  +++  D  +  RT    L P       E+
Sbjct: 1   MELQLKRPLVFFDIESTGLSPEKDRIVEISLIKVYPDGHEEVRT--RRLNPECH-IPEES 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-P 117
             +HGITD+ ++D P+F  +          Q  +   +N  +FDV  +  E  R + +  
Sbjct: 58  TAVHGITDDDVRDCPTFRQVAKSLASMI--QGCDIAGYNSNRFDVPLLGEEFLRADVEVD 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               R ID  +I    H   R  L +  K Y         H A  D+    +V    +
Sbjct: 116 FSRCRFIDVQTI---FHKMERRTLEAAYKFY-CDKDLTEAHSAEADTRATLEVLKAQL 169


>gi|313887234|ref|ZP_07820929.1| exonuclease [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923325|gb|EFR34139.1| exonuclease [Porphyromonas asaccharolytica PR426713P-I]
          Length = 255

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 13/194 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  +     +VFDIE TGLD  NDRIIE+  ++L+ D  +  RT +    P       E+
Sbjct: 1   MTLQLDRPLVVFDIEATGLDITNDRIIELTILKLMPDGERIVRTRRF--NPE-MPIPAES 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-P 117
             +HGITDE ++D P F +      +  +    +   +N  +FD+  +  E  R   +  
Sbjct: 58  TAIHGITDEDVRDCPPFRACAKSLAELID--GCDLAGYNSQRFDLPMLGEEFLRAGVEVD 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   + ID  +I  +  P     L    + Y     H   HGA  D+    DV +  +  
Sbjct: 116 LLSRQHIDVQTIFHKMEP---RTLEGAVRFY-CHREHIGAHGAEADTIATLDVLLAQLEK 171

Query: 178 -GSQINFGFKTNED 190
            G  +    K   D
Sbjct: 172 YGDALPHSVKELSD 185


>gi|319760755|ref|YP_004124692.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC]
 gi|317115316|gb|ADU97804.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC]
          Length = 209

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 9/153 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTG+   +  R  E+  V L++  +    F   +   G    P   +L GIT+
Sbjct: 5   IAVIDFETTGMTPAQGARATEVAIV-LMEGERVVDRFASLMK-TGVWIPPFITRLTGITN 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P+   +  E   F    +A  +AHNA FD  F  +EL+    D   P     T+
Sbjct: 63  AMVDAAPAAEPVMREAARFVG--DAPMVAHNAAFDSRFWQSELRHAGLDAPHPFA--CTV 118

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHG 159
            ++RR +P    + L  L    G+  + R  H 
Sbjct: 119 LLSRRIYPDAPSHSLGRLTDHLGLPRTGR-AHR 150


>gi|260198755|ref|ZP_05766246.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T46]
 gi|289441146|ref|ZP_06430890.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T46]
 gi|289414065|gb|EFD11305.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T46]
          Length = 319

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 9/181 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T  
Sbjct: 16  WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAA 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D+P F+ I  E  D    +    +AHN  FD  F+ AE +   +  L    ++ T+ 
Sbjct: 73  MLDDQPQFADIAGEVVDVL--RGRTLVAHNVAFDYAFLAAEAEIA-EAELPVDFVMCTVE 129

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +G+    +  H A  D+ +L+ +    +    +++     
Sbjct: 130 LARRLQLGVDNLRLETLAAHWGVP--QQRPHDAFDDARVLTGILAAALESARELDVWLPV 187

Query: 188 N 188
           +
Sbjct: 188 H 188


>gi|215424954|ref|ZP_03422873.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T92]
 gi|289748229|ref|ZP_06507607.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T92]
 gi|289688816|gb|EFD56245.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T92]
          Length = 329

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 9/181 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T  
Sbjct: 16  WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAA 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D+P F+ I  E  D    +    +AHN  FD  F+ AE +   +  L    ++ T+ 
Sbjct: 73  MLDDQPQFADIAGEVVDVL--RGRTLVAHNVAFDYAFLAAEAEIA-EAELPVDFVMCTVE 129

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +G+    +  H A  D+ +L+ +    +    +++     
Sbjct: 130 LARRLQLGVDNLRLETLAAHWGVP--QQRPHDAFDDARVLTGILAAALESARELDVWLPV 187

Query: 188 N 188
           +
Sbjct: 188 H 188


>gi|31794883|ref|NP_857376.1| DNA polymerase III subunit epsilon [Mycobacterium bovis AF2122/97]
 gi|121639627|ref|YP_979851.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224992123|ref|YP_002646812.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260184632|ref|ZP_05762106.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           CPHL_A]
 gi|289445310|ref|ZP_06435054.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           CPHL_A]
 gi|31620481|emb|CAD95924.1| PUTATIVE DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ [Mycobacterium
           bovis AF2122/97]
 gi|121495275|emb|CAL73761.1| Putative dna polymerase III (epsilon subunit) dnaQ [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|224775238|dbj|BAH28044.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289418268|gb|EFD15469.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           CPHL_A]
          Length = 329

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 9/181 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T  
Sbjct: 16  WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAA 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D+P F+ I  E  D    +    +AHN  FD  F+ AE +   +  L    ++ T+ 
Sbjct: 73  MLDDQPQFADIAGEVVDVL--RGRTLVAHNVAFDYAFLAAEAEIA-EAELPVDFVMCTVE 129

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +G+    +  H A  D+ +L+ +    +    +++     
Sbjct: 130 LARRLQLGVDNLRLETLAAHWGVP--QQRPHDAFDDARVLTGILAAALESARELDVWLPV 187

Query: 188 N 188
           +
Sbjct: 188 H 188


>gi|317182753|dbj|BAJ60537.1| DNA polymerase III subunit epsilon [Helicobacter pylori F57]
          Length = 287

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 8/161 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GI  E  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 132 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +R   S R  L+ L +  G  I     H A  D+     ++
Sbjct: 189 KRAILSIRYSLSFLKELLGFGIE--VSHRAYADALASYKLF 227


>gi|220913226|ref|YP_002488535.1| DNA polymerase III subunit epsilon [Arthrobacter chlorophenolicus
           A6]
 gi|219860104|gb|ACL40446.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
          Length = 236

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 95/230 (41%), Gaps = 19/230 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   N + +  FD+ETTG +S+  RI+   +V ++D+         +L   G +   EA 
Sbjct: 1   MSTWNTLPRAAFDLETTGRNSRAARIVT-ASVTVVDHRGEVIREHEWLADPGVEIPTEAS 59

Query: 61  KLHGITDEFLK-DKPSFSSI---FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            +HG+T E  + D      +    +       +     IA NA +D   + AE  R    
Sbjct: 60  DVHGVTTEQARKDGRPAHEVTRELAAVLQELFDTGVPVIAFNASYDFTVLAAESARYGVP 119

Query: 117 PLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---- 170
            L    ++D   + ++  ++   +  L +LC+ YG+ + +   H +  D+     V    
Sbjct: 120 QLTRFPVLDPYIMNKQVDRYRKGKRTLTALCEEYGVVLDN--AHTSAADALATLKVLDAM 177

Query: 171 ---YIKMMVGGS---QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214
              + K+M+  S   Q+   +   +   F+   +     ++++ D P+  
Sbjct: 178 AGKFPKLMMPASQLHQLQVDWAVTQAADFQGYLRKTKPTAVIEGDWPVLP 227


>gi|167999243|ref|XP_001752327.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696722|gb|EDQ83060.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1960

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 21/225 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IVFDIETTG      +I+E+   ++        T +  + P  +     +  +H IT E
Sbjct: 251 IIVFDIETTGFLKPGSKIVELACRDIAGGDC--STLETLVNP-YQPVPIASTAVHKITSE 307

Query: 69  FL--KDKPSFSSIFSEFWDF-----FNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120
            +   D PS++ + + F DF         +   +AHN  +FDV FI  E    + +    
Sbjct: 308 MVNRDDIPSWTEVMTAFVDFVESRRIGNSDVILVAHNGRRFDVPFIMKECYECSMEIPSH 367

Query: 121 SRIIDTLSIARRKHPS--SRNDLNSL----CKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              IDT+ +A+        +  L +L       Y +       H A +D  +L+ V+ K+
Sbjct: 368 WYFIDTIDLAKAMLKKRFGKTKLYNLQFLYYDCYKLP-RLEDAHRAGVDVDMLASVFGKL 426

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           ++   ++        D+ FK     +    LL+ +   +T ++KE
Sbjct: 427 LM---ELEMPVSELLDQAFKASHIELKPDLLLRENNDRYTSLSKE 468


>gi|89891036|ref|ZP_01202544.1| putative DNA polymerase III, epsilon subunit [Flavobacteria
           bacterium BBFL7]
 gi|89516680|gb|EAS19339.1| putative DNA  polymerase III, epsilon subunit [Flavobacteria
           bacterium BBFL7]
          Length = 255

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 9/172 (5%)

Query: 2   IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  R I  FD+ETTG++   DRI+EI   ++L    T +T+   + P          
Sbjct: 1   MQLNLRRPICFFDLETTGVNISKDRIVEIAIHKVLPDG-TEKTYTYRVNPT-VPIPAATT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGITD+ +KD+P+F  +  E  +   + +      N +FD+  +  E+ R   D    
Sbjct: 59  AVHGITDDMVKDEPTFKELAHEIHNIIKDSDLAGFNSN-RFDIPLLAEEMLRAGVDFEMG 117

Query: 121 SRI-IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +R  ID  +I    H   +  L +  K Y       + H A  D+    +V 
Sbjct: 118 NRNAIDVQNI---FHKMEQRTLVAAYKFY-CDKDLTNAHSAEADTIATYEVL 165


>gi|116492274|ref|YP_804009.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Pediococcus pentosaceus ATCC 25745]
 gi|116102424|gb|ABJ67567.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Pediococcus pentosaceus ATCC 25745]
          Length = 178

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET            I    + +   T+  +   + P    N    +++HGI 
Sbjct: 1   MNFIAMDFETA--APTRASACSIALTVVQNDVITDELYS-LINPETEFN-WRNVQVHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              + D P+F  ++     FF   +   +AHNA FD   +   L+R   + L P + +DT
Sbjct: 57  QADVSDAPTFPELWPVVKQFFTP-DKLVVAHNATFDNSVLKKTLERYQINRL-PYQTLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L  ++  +P  + + LN++C   GI + H   H AL DS   +++ + 
Sbjct: 115 LRTSKSFYPDYTNHKLNTICDNLGIDLQHH--HNALDDSRACANILLH 160


>gi|293380779|ref|ZP_06626825.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Lactobacillus crispatus 214-1]
 gi|290922665|gb|EFD99621.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Lactobacillus crispatus 214-1]
          Length = 318

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGITD 67
             + DIETTGL    DRIIE+G V++ +    ++ +   +  +          KL+GIT+
Sbjct: 33  YTMLDIETTGLYPYRDRIIELGGVKVRNGQIVDQ-YTNLVKFSKNNSVPAFITKLNGITE 91

Query: 68  EF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           E  +K+         EF +F  +     I +N  FD+ F+    Q+     LD +  +D 
Sbjct: 92  EQIVKEGIPAEQAIREFREFIGDD--VIIGYNVNFDLNFLYDLSQKYGLPVLD-NDYVDV 148

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           L +AR  +P  R++ L    +R GI  +    H  L DS     VY
Sbjct: 149 LRLARTYYPRERHNRLLDCMQRAGI--AQVEAHHGLQDSLDTIKVY 192


>gi|86149218|ref|ZP_01067450.1| DNA polymerase III PolC-type [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88596976|ref|ZP_01100212.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562107|ref|YP_002343886.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85840576|gb|EAQ57833.1| DNA polymerase III PolC-type [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190665|gb|EAQ94638.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359813|emb|CAL34600.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|315928220|gb|EFV07537.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315930011|gb|EFV09154.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni 305]
          Length = 253

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 7/147 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIE+TG  SK   I+EIGAV++ +  +  R FQ F+    ++      +L GIT E
Sbjct: 72  FCIVDIESTGGVSKG-EILEIGAVKIQNSKEIGR-FQSFVK--VKEIPKNITELTGITYE 127

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++  S + + S+F  F   +++ ++AHN +FD  FI+  L       L  +R I T+ 
Sbjct: 128 MVENASSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILL-NRRICTIE 184

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155
            A+    S +  L  L +  G+   H 
Sbjct: 185 FAQCCIESPKYKLEVLKEFLGVENMHH 211


>gi|332687228|ref|YP_004457002.1| exonuclease [Melissococcus plutonius ATCC 35311]
 gi|332371237|dbj|BAK22193.1| exonuclease [Melissococcus plutonius ATCC 35311]
          Length = 176

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 10/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     +      +  V++ +    +  +   + P  +    + +++HGI 
Sbjct: 1   MNFIAMDFETA--SHERHSACSLALVKVENSRIVDE-YYTLIQPETQFF-WKNIQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E + D P F  I+     FF + N   +AHNA FD   + + L    K P      + T
Sbjct: 57  PEDVTDAPKFPEIWQGIQLFF-QLNQLIVAHNAAFDCNVLASCL-NYYKLPQPNYLSLCT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  +R+       + L+++C+   I ++H   H AL DS   + + +
Sbjct: 115 VKTSRKFFRELPNHKLDTICRALNIPLNH---HNALDDSRACAKILL 158


>gi|262379336|ref|ZP_06072492.1| ribonuclease T [Acinetobacter radioresistens SH164]
 gi|262298793|gb|EEY86706.1| ribonuclease T [Acinetobacter radioresistens SH164]
          Length = 219

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 80/196 (40%), Gaps = 20/196 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G +++ D ++EI  + ++            +   + P  G     
Sbjct: 16  RFRGFLPVVVDVETAGFNAQTDALLEIACIPIIYDEEGKFIPGPAYHAHINPFEGANLDR 75

Query: 58  EALKLHGITD------EFLKD-KPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFIN 107
            +L   G+           +D K +   IF    D   EQ   +A  + HNA FD+GF+ 
Sbjct: 76  RSLDFIGVDPFNPMRMAMAEDEKTALKRIFKSIHDIRREQLCTHAILVGHNAHFDLGFLQ 135

Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A + R     ++P     + DT++++       +  L   C + GI    +  H AL D+
Sbjct: 136 AAINRSGTKNQNPFHSFSVFDTVTLSALMF--GQTVLAKSCLQAGIEFDGKEAHSALYDT 193

Query: 165 HLLSDVYIKMMVGGSQ 180
              ++++  ++   + 
Sbjct: 194 QKTAELFCYILNKLAP 209


>gi|109948241|ref|YP_665469.1| DNA polymerase III subunit epsilon [Helicobacter acinonychis str.
           Sheeba]
 gi|109715462|emb|CAK00470.1| DNA polymerase III [Helicobacter acinonychis str. Sheeba]
          Length = 282

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 81/204 (39%), Gaps = 10/204 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +        L GI  E  
Sbjct: 70  FIDLETTGSCPLKHEILEIGAVQVSGGKIINR-FETLVK--VKSVPDYISDLTGIAYEDT 126

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 127 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 183

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           RR   S R  L+ L +  G  I     H A  D+     ++   ++     N+   T + 
Sbjct: 184 RRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNL--PNYVKTTIDL 239

Query: 191 RFFKEEKKTVPNISLLKRDKPLFT 214
             F +   T+   S   R + + +
Sbjct: 240 IDFSKCANTLIKRSPRARHQEIPS 263


>gi|221632364|ref|YP_002521585.1| exonuclease family [Thermomicrobium roseum DSM 5159]
 gi|221156848|gb|ACM05975.1| exonuclease family [Thermomicrobium roseum DSM 5159]
          Length = 982

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 13/167 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIE TG+D + D IIE+ A++  +  +    F+  + P  R        L G+T  
Sbjct: 5   YVALDIEATGMDPERDEIIEVAAIKFRE-EEVLERFETLVQP-RRPVPLAVASLTGLTMR 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+  PSF  I      F   +N   +  +  +D+  ++A    +       + + DT  
Sbjct: 63  DLRRAPSFQQIAPRLRQFV--RNYPIVGQSPDYDLQMLSAHGLEL------RNPVYDTFR 114

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +A    P      L  +  R GI+++   +H A+ D      V++ +
Sbjct: 115 LATILLPDLPAYSLAGIAARLGISVA--QQHRAMADVETTMAVFLGL 159


>gi|269796146|ref|YP_003315601.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
 gi|269098331|gb|ACZ22767.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
          Length = 241

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 89/227 (39%), Gaps = 25/227 (11%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+D   DRI+    V     +   RT+   L P G    PEA  +HGIT E  +
Sbjct: 11  FDTETTGVDVSEDRIVSAALVRRHVGTTEVRTW--LLDP-GVPIPPEASSIHGITTEVAR 67

Query: 72  D-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP------ 120
                   +   I  E     + +    +A NA FD+  + AEL+R     L+       
Sbjct: 68  AEGQDPAGALDEIAKEIAAALS-EGIPVVAFNATFDLCILQAELRRYGLQTLEERTGAEV 126

Query: 121 SRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           + +ID L + R   ++   +  L  LC  YGI       H A +D     DV   M+   
Sbjct: 127 APVIDPLVLDRAVDRYRRGKRKLVDLCGVYGIE-GDGELHTADVDVLATLDVLGAMVTQY 185

Query: 179 SQIN-------FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
            +I         G++  E R + E+     +   L       T ++ 
Sbjct: 186 PEIGARTLQDLHGYQATEHRRWAEDFNAWRDSKGLTGPGAELTWLSD 232


>gi|313682951|ref|YP_004060689.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155811|gb|ADR34489.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 204

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGL++K D ++ IGAV++      T+ +F++FL P+ R+ S E++K+H I   
Sbjct: 32  VVFDTETTGLNTKKDEVLSIGAVKIKGDKILTSESFELFLKPS-REISVESIKIHHIRPC 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTL 127
            L++         +F +F   +    I +  +FD+  +N  ++  I  +  +    +  L
Sbjct: 91  DLENAIEPVEGAKKFLEFVGNR--PLIGYYLEFDMAMMNRLIKPWIGVNLPNRQIEVSGL 148

Query: 128 SIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              ++    P    DL        + I    +H AL D+ + + VYIK+
Sbjct: 149 YFDKKIELIPQGNIDLRFDTILRDLNIPRMGQHNALNDAIMTAMVYIKL 197


>gi|71667552|ref|XP_820724.1| exonuclease [Trypanosoma cruzi strain CL Brener]
 gi|70886080|gb|EAN98873.1| exonuclease, putative [Trypanosoma cruzi]
          Length = 223

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 86/216 (39%), Gaps = 49/216 (22%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-------NRTFQVFLCPNGRKNSPEA 59
           M  I  D+ETTG  ++ D ++ IGAVEL     T        R+F   + P+ + +S +A
Sbjct: 1   MSAICVDLETTGFSAQRDDVVSIGAVELRWDGTTLQQWVLGARSFFRTVRPS-KPSSHQA 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFF-------------------------------- 87
             +HG++ E L+D P    + S+F  F                                 
Sbjct: 60  EAVHGLSFEMLRDAPPLEDVISDFAAFLIQLDGNLPQSGQTEENYRAKPGDLSAKKRCTA 119

Query: 88  -NEQNAEW-----IAHNAKFDVGFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRN 139
                        IAHNA FD  F+   + R        + + +  T S+ R  +     
Sbjct: 120 ATTAGCVLTLPPVIAHNANFDASFLQRAVSRAGWRVVWDEYAPLTCTQSMFRALYSHQAA 179

Query: 140 DLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKM 174
           DL+  C+  G+  S R  +H AL D+ L   +++++
Sbjct: 180 DLSRACQFCGVDTSGRDERHDALHDAQLCGRLFLRL 215


>gi|328468890|gb|EGF39850.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
          Length = 248

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 27/202 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
               ++  +  D ETTGL++++D I+ IG V   +D  + + +    + PN R+ + E++
Sbjct: 51  TPLKEVPFVSVDFETTGLNAEDDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESV 109

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGITD  +K+ P  + I  E  D    +    + H    +  F    L     + +  
Sbjct: 110 VIHGITDSEVKNAPQLTQILGEILDALAGK-VVLV-HYKNIERQFFYNALLNTIGEGI-Q 166

Query: 121 SRIIDTLSIARRKHPS--------------SRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             ++DTL I                         L    +RYG+       H AL D+  
Sbjct: 167 FPVVDTLDIEYALQRRECSGIWNKLKGKKPGSVRLGHARERYGLP--AYQPHHALTDALA 224

Query: 167 LSDVYIKMMVGGSQINFGFKTN 188
            ++++       +Q+ + F  +
Sbjct: 225 TAELF------QAQLQYHFNRD 240


>gi|238853258|ref|ZP_04643643.1| DNA polymerase III alpha chain [Lactobacillus gasseri 202-4]
 gi|238834142|gb|EEQ26394.1| DNA polymerase III alpha chain [Lactobacillus gasseri 202-4]
          Length = 177

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET     ++     +  V + +    +R F   + P         +++HGIT
Sbjct: 1   MNFTAMDFETANSHPESA--CSLALVMVRNNEIVDR-FYTVINPQ-MPFDSRNIRVHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K+ P+ + ++ +      +      AHNA+FD   +   L R N  P      IDT
Sbjct: 57  AEDVKNAPTMAEVWPKIKK-LYQPGMLVAAHNARFDCRVMEKSLARYNI-PAPHYFAIDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L+ ++   P+   + L+++ +   I + H   H AL DS   + + I+
Sbjct: 115 LATSKAFEPNLPNHKLDTVSEALDINLWHH--HNALSDSEACAGILIE 160


>gi|257886664|ref|ZP_05666317.1| exonuclease [Enterococcus faecium 1,141,733]
 gi|257822718|gb|EEV49650.1| exonuclease [Enterococcus faecium 1,141,733]
          Length = 177

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET      +     +  V + +    +  F   + P         +++HGI 
Sbjct: 1   MNFIAMDFETANHQPYSA--CSLALVMVKNSQIVDE-FYTLIQPET-PFFWRNVQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +++ P F  ++     +F ++N   +AHNA FD   +   L   + +       + T
Sbjct: 57  QEDVRNAPKFPEVWQTIQPYF-QKNRLVVAHNAAFDTKVLAGCLDYYHLEQ-PNYLSLCT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  +RR  P    + LN++C+   I + H   H AL DS   +++ +
Sbjct: 115 VKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 159


>gi|290343478|ref|YP_003494845.1| hypothetical protein OTV1_005 [Ostreococcus tauri virus 1]
 gi|260160893|emb|CAY39593.1| hypothetical protein OTV1_005 [Ostreococcus tauri virus 1]
          Length = 446

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 90/227 (39%), Gaps = 24/227 (10%)

Query: 9   KIVFDIETTG------------LDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
            + +D ET G            L   +D RI+ + AV+     +   TF   + P G + 
Sbjct: 8   YVAWDTETCGIPKTRVRPTRENLSKFDDARIVSLSAVKFSSRGREIDTFNRIIKPIGYQV 67

Query: 56  SPEALKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              A  +HGIT E+ ++    F + F EF +F  ++     AHN+ FD G I  EL RI 
Sbjct: 68  --GATHIHGITHEYAEEHGVPFKTAFQEFIEFIGDRCNILCAHNSLFDEGIIGHELLRIG 125

Query: 115 KDP----LDPSRIIDTLSIARRKHPSSRNDLNSLCK-RYGITISHRSKHGALLDSHLLSD 169
            DP    LD      T  + +++   S   L +L K  +G    +   H +L D+     
Sbjct: 126 LDPNKDFLDKYIFNCTHEMYKKRF-LSSIKLTNLYKDIFGKEFDN--AHNSLADARACGQ 182

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           VY  +M    +        +         +   I+  KR + L   +
Sbjct: 183 VYPYLMGNTKRELKPLPIKKVIIGASAVASAIGINQYKRPQELVEEL 229


>gi|323345727|ref|ZP_08085950.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella oralis
           ATCC 33269]
 gi|323093841|gb|EFZ36419.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella oralis
           ATCC 33269]
          Length = 284

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 12/176 (6%)

Query: 2   IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  +  IVFD+ETTGLD  ND II+I  +++    K  R   +F+ P G     E  
Sbjct: 1   MKLNLTKPLIVFDLETTGLDLVNDHIIQISYIKVYPDGKEERE-NIFVNP-GISIPEEVT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
            L GI ++ +KD P+F  I S   +    +  ++  +N   FD+  +  E  R   D   
Sbjct: 59  LLTGIGNDDVKDAPTFKEIASSLCE--KFKGCDFAGYNSNHFDIPMLAEEFLRAGIDFDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYI 172
              R+ID  +I    H   + +L +  K Y G  +      H A  D+     V +
Sbjct: 117 AHCRLIDAQTI---FHKMEKRNLAAAYKFYCGRKMEEDFEAHRADQDTEATYKVLM 169


>gi|302533422|ref|ZP_07285764.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
 gi|302442317|gb|EFL14133.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
          Length = 241

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 15/182 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M R  +     FD ETTG+D + DRI+    V         R+ +  + P G    P A 
Sbjct: 1   MTRWYEGPLAAFDTETTGVDVEQDRIVSAALVVQECAGGRVRSTRWLVNP-GVPVPPGAT 59

Query: 61  KLHGITDEFL-KDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKD 116
           ++HG+TDE L ++    + +  E      EQ       +  NA FD+  ++ EL+R    
Sbjct: 60  EVHGLTDEHLQRNGRWPAPVVEEIARALGEQRMAGRPVVVMNAPFDLTLLDRELRRHRAS 119

Query: 117 PL------DPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            L       P  ++D   L     ++   R  L  LC  YGI +     H A  D+    
Sbjct: 120 TLARYLDNRPLTVLDPRVLDKHLDRYRKGRRTLTDLCAHYGIELEG--AHDASADAQAAL 177

Query: 169 DV 170
           +V
Sbjct: 178 EV 179


>gi|78355675|ref|YP_387124.1| DNA polymerase III subunit epsilon [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218080|gb|ABB37429.1| DNA polymerase III, epsilon subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 239

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 21/185 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+E TGLD ++D I+ IGAV +   S      F  ++ P      P A  +H IT 
Sbjct: 41  FAVTDMEMTGLDPEHDEIVAIGAVRIRGLSIITGDVFHTYVRPQRSMARP-ATLIHRITP 99

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDT 126
             L+  P+ + +   F D+  +  A    H+   D+GF+    +R +   P  P   +DT
Sbjct: 100 AQLQHSPALAGLLPGFVDWCGQ--ALITGHHVGLDMGFLTRACRRHLGGAPATPC--VDT 155

Query: 127 LSIARR------------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +A+               P+    L  L  RYG+       H AL D+   + +++ +
Sbjct: 156 MRLAQAWERERWERSFDPFQPTVSYTLADLSARYGLP--QFRAHDALEDALQTAYLFLYL 213

Query: 175 MVGGS 179
           +    
Sbjct: 214 VRKLK 218


>gi|110802120|ref|YP_698713.1| DNA polymerase III subunit epsilon [Clostridium perfringens SM101]
 gi|110682621|gb|ABG85991.1| exonuclease family protein [Clostridium perfringens SM101]
          Length = 302

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG   + D       +   + P   +  P  + +HGI 
Sbjct: 1   MDFVAIDFETA--NEKRNSACSIGLTVVKDNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++++ +F+ I+ E  D+ +      IAHNA FD+  +   L   +  P        T
Sbjct: 58  PEDVENERTFNEIWKEIKDYID--GNLVIAHNAAFDISVLRKTLDFYDI-PYPDFEYACT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +A+  + S   + L ++ +  G   SH   H A  D+   +++ + +
Sbjct: 115 VVMAKNYYKSLPNHKLGTVSEALGFEFSH---HHAGEDARACANILLNI 160


>gi|116629923|ref|YP_815095.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus gasseri ATCC 33323]
 gi|282851483|ref|ZP_06260848.1| exonuclease [Lactobacillus gasseri 224-1]
 gi|311110442|ref|ZP_07711839.1| exonuclease [Lactobacillus gasseri MV-22]
 gi|116095505|gb|ABJ60657.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus gasseri ATCC 33323]
 gi|282557451|gb|EFB63048.1| exonuclease [Lactobacillus gasseri 224-1]
 gi|311065596|gb|EFQ45936.1| exonuclease [Lactobacillus gasseri MV-22]
          Length = 177

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET     ++     +  V + +    +R F   + P         +++HGIT
Sbjct: 1   MNFTAMDFETANSHPESA--CSLALVMVRNNEIVDR-FYTVINPQ-MPFDGRNIRIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K+ P+ + ++ +      +      AHNA+FD   +   L R N  P      IDT
Sbjct: 57  AEDVKNAPTMAEVWPKIKK-LYQPGMLVAAHNARFDCRVMEKSLARYNI-PAPHYFAIDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L+ ++   P+   + L+++ +   I + H   H AL DS   + + I+
Sbjct: 115 LATSKAFEPNLPNHKLDTVSEALDINLWHH--HNALSDSEACAGILIE 160


>gi|332299738|ref|YP_004441659.1| Exonuclease RNase T and DNA polymerase III [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176801|gb|AEE12491.1| Exonuclease RNase T and DNA polymerase III [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 255

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 12/178 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  +     +VFDIE TGLD  NDRIIE+  ++L+ D  +  RT +    P       E+
Sbjct: 1   MTLQLDRPLVVFDIEATGLDITNDRIIELTILKLMPDGERIVRTRRF--NPE-MPIPAES 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-P 117
             +HGITDE ++D P F +      +  +    +   +N  +FD+  +  E  R   +  
Sbjct: 58  TAIHGITDEDVRDCPPFRACAKSLAELID--GCDLAGYNSQRFDLPMLGEEFLRAGVEVD 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L   + ID  +I  +  P     L    + Y     H   HGA  D+    DV +  +
Sbjct: 116 LLSRQHIDVQTIFHKMEP---RTLEGAVRFY-CHREHIGAHGAEADTIATLDVLLAQL 169


>gi|219683338|ref|YP_002469721.1| DNA polymerase III polC-type [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|219620988|gb|ACL29145.1| DNA polymerase III polC-type [Bifidobacterium animalis subsp.
           lactis AD011]
          Length = 123

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 4/110 (3%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            M  I  D+ETTG  ++NDRI EIGAV++ D    +R F   + P GR+ S    +L GI
Sbjct: 8   PMNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDR-FTQLVNP-GRRVSARITELTGI 65

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           ++E L+D+P    I  +F  +   +N   + HN KFD+ F+ A  +R+ +
Sbjct: 66  SNEMLEDQPVIEDILGDFIHW--TENDRLVGHNTKFDLSFLIANAERVFR 113


>gi|184154853|ref|YP_001843193.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260663117|ref|ZP_05864009.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|183226197|dbj|BAG26713.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260552309|gb|EEX25360.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 179

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET      +   + I  V     S+    F   + P          ++HGI 
Sbjct: 1   MNFIAMDFETASAKRFSACSLAITIVR---NSQIQDEFYTLINPQT-PFFWRNTQVHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +KD P+F  ++    +FF   +   IAHNA FD   +   L     +P    + +DT
Sbjct: 57  ERDVKDAPTFPEVWEHIQEFFTP-DKLVIAHNATFDNSVLKNTLLHFEIEP-PVYQTLDT 114

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L  +R+  P    + LN++C +  I + H   H AL D+H  +++ +
Sbjct: 115 LKTSRQLFPAFPNHKLNTICDQLNIDLHHH--HNALDDAHACANILL 159


>gi|191637943|ref|YP_001987109.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           casei BL23]
 gi|190712245|emb|CAQ66251.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           casei BL23]
 gi|327382013|gb|AEA53489.1| hypothetical protein LC2W_1155 [Lactobacillus casei LC2W]
 gi|327385171|gb|AEA56645.1| hypothetical protein LCBD_1147 [Lactobacillus casei BD-II]
          Length = 180

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      +  V ++  +K   +F   + P   +   + + +HGIT
Sbjct: 1   MDFIAMDFETA--NRKRASACSLALV-VVQQNKVVDSFYTLINPQ-MQFDAQNIHIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D+P+F  ++     F+        AHNA FDV  +   L R         ++IDT
Sbjct: 57  PEMVQDQPTFDRVWPHIQMFYTP-GRIVTAHNAPFDVSVMRLTLDRYGI-AAPRYQVIDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +  +R+  P    + L+++     I + H   H AL DS+  + + I 
Sbjct: 115 VKTSRQFLPKLPNHRLDTVSAALHIPLEHH--HNALADSYACARILIA 160


>gi|58337906|ref|YP_194491.1| DNA polymerase III [Lactobacillus acidophilus NCFM]
 gi|227902927|ref|ZP_04020732.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796]
 gi|58255223|gb|AAV43460.1| DNA polymerase III [Lactobacillus acidophilus NCFM]
 gi|227869343|gb|EEJ76764.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796]
          Length = 318

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 7/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTGL    DRI E+GAV++ +    ++   +   P   K      KL+GIT+E
Sbjct: 33  YTMLDIETTGLSPYRDRITELGAVKVRNGQIVDQYTNLVKFPKNNKVPAFITKLNGITEE 92

Query: 69  FLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +  +        +EF +F  +       +N  FD+ F+    Q+    P+  +  +D L
Sbjct: 93  QIINEGIPAEQAITEFREFIGDD--VIAGYNINFDLNFLYDLSQKFKL-PILNNDYVDVL 149

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +AR  +P  R++ L    +R GI  +   +H  L DS     VY
Sbjct: 150 RLARAYYPRERHNRLIDCMQRAGI--AKVEQHHGLADSLDTIKVY 192


>gi|295425759|ref|ZP_06818444.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664]
 gi|295064567|gb|EFG55490.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664]
          Length = 318

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 7/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTGL    DR+IE+GA+++ +    +    +              KL+GIT+E
Sbjct: 33  YTLLDIETTGLSPYRDRVIELGAIKVRNGEIVDEYSHLVAYDKSNCVPAFITKLNGITEE 92

Query: 69  FLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +  +    +    +F  F  +     I +N  FD+ FI    ++ +   L+ +  +D L
Sbjct: 93  KIINEGIPVAEAIHDFRQFIGDD--VIIGYNVNFDLNFIYDLAKKYHLPELNNN-YVDVL 149

Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +AR  +P  R++ L    +R GI  +   +H  L DS     VY
Sbjct: 150 RLARAYYPKERHNRLIDCMQRAGI--AQVEQHRGLDDSIDTKKVY 192


>gi|255320382|ref|ZP_05361566.1| ribonuclease T [Acinetobacter radioresistens SK82]
 gi|255302577|gb|EET81810.1| ribonuclease T [Acinetobacter radioresistens SK82]
          Length = 215

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 80/196 (40%), Gaps = 20/196 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G +++ D ++EI  + ++            +   + P  G     
Sbjct: 12  RFRGFLPVVVDVETAGFNAQTDALLEIACIPIIYDEEGKFIPGPAYHAHINPFEGANLDR 71

Query: 58  EALKLHGITD------EFLKD-KPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFIN 107
            +L   G+           +D K +   IF    D   EQ   +A  + HNA FD+GF+ 
Sbjct: 72  RSLDFIGVDPFNPMRMAMAEDEKTALKRIFKSIHDIRREQLCTHAILVGHNAHFDLGFLQ 131

Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           A + R     ++P     + DT++++       +  L   C + GI    +  H AL D+
Sbjct: 132 AAINRSGTKNQNPFHSFSVFDTVTLSALMF--GQTVLAKSCLQAGIEFDGKEAHSALYDT 189

Query: 165 HLLSDVYIKMMVGGSQ 180
              ++++  ++   + 
Sbjct: 190 QKTAELFCYILNKLAP 205


>gi|260062630|ref|YP_003195710.1| DNA polymerase III subunit epsilon [Robiginitalea biformata
           HTCC2501]
 gi|88784197|gb|EAR15367.1| DNA polymerase III, epsilon subunit [Robiginitalea biformata
           HTCC2501]
          Length = 222

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 15/176 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D ETTG   ++DRI+ IGA+ +         + + F+     +    ++ +HGI  
Sbjct: 34  FVVLDTETTGFSPQHDRILSIGALRVSQGRIRVKESLERFVKQE--RFDRASVPIHGILR 91

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID-- 125
               ++ +     +E  DF  +  +  + H+  FD   I A  QR    PL  + +ID  
Sbjct: 92  TGSSERVTEREALAELLDFTGQ--SPVVGHHISFDQAMIQAACQRSGLGPL-RNPLIDTG 148

Query: 126 -----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                TL  +          L+ L  ++ I+   R  H AL D+++ +  ++ ++ 
Sbjct: 149 LLYGHTLIKSPLLIKKDHYTLDELADKFDISCKDR--HTALGDAYITAIAFLNILE 202


>gi|118619457|ref|YP_907789.1| DNA polymerase III subunit epsilon [Mycobacterium ulcerans Agy99]
 gi|118571567|gb|ABL06318.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium ulcerans
           Agy99]
          Length = 329

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 90/214 (42%), Gaps = 25/214 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G    + R+I + A+ L        +    L P G    P    +HG+T  
Sbjct: 16  WAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGG---DPGPTHVHGLTAA 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D+P F+ I  +  +    +    +AHN  FD  F+ AE +  + + L    ++ T+ 
Sbjct: 73  MLEDQPQFADIVGDLTELL--RGRTLVAHNVAFDYSFLAAEAELTDAE-LPVDSVMCTVE 129

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +G+  +    H A  D+ +LS +    +            
Sbjct: 130 LARRLELGIDNLRLETLAAHWGV--TQERPHDAFDDALVLSGILAPAL------------ 175

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
              +  +E    +P   + +R  P   R+T +EL
Sbjct: 176 ---QRARERDVWLPIHPVTRRRWP-NGRVTHDEL 205


>gi|256851438|ref|ZP_05556827.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 27-2-CHN]
 gi|260660859|ref|ZP_05861774.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 115-3-CHN]
 gi|282933112|ref|ZP_06338499.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
 gi|297206253|ref|ZP_06923648.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           jensenii JV-V16]
 gi|256616500|gb|EEU21688.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 27-2-CHN]
 gi|260548581|gb|EEX24556.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 115-3-CHN]
 gi|281302616|gb|EFA94831.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
 gi|297149379|gb|EFH29677.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           jensenii JV-V16]
          Length = 177

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANRHPESA--CSLALVMVRNNKIIDR-FYTVINPQ-MPFDGRNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +KD P+ + ++ +      +      AHNA+FD   +   L R + D      +IDT
Sbjct: 57  PDDVKDAPTMAEVWPKI-KALYQPGMLVAAHNARFDANVLKMSLARYDIDE-PHYLVIDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L  +R   P    + LN++ +   + + H   H AL DS   + + IK
Sbjct: 115 LKTSRLFEPDLPNHKLNTVAEALDVELWHH--HNALSDSEACAGILIK 160


>gi|295693537|ref|YP_003602147.1| DNA polymerase iii [Lactobacillus crispatus ST1]
 gi|295031643|emb|CBL51122.1| DNA polymerase III [Lactobacillus crispatus ST1]
          Length = 318

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGITD 67
             + DIETTGL    DRI E+G V++ +    ++ +   +  +          KL+GIT+
Sbjct: 33  YTMLDIETTGLYPYRDRITELGGVKVRNGQIVDQ-YTNLVKFSKNNSVPAFITKLNGITE 91

Query: 68  EF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           E  +K+         EF +F  +     I +N  FD+ F+    Q+     LD +  +D 
Sbjct: 92  EQIVKEGIPAEQAIREFREFIGDD--VIIGYNVNFDLNFLYDLSQKYGLPVLD-NDYVDV 148

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           L +AR  +P  R++ L    +R GI  +    H  L DS     VY
Sbjct: 149 LRLARTYYPRERHNRLLDCMQRAGI--AQVEAHHGLQDSLDTIKVY 192


>gi|219559793|ref|ZP_03538869.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T17]
 gi|289571955|ref|ZP_06452182.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T17]
 gi|289545709|gb|EFD49357.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T17]
          Length = 284

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 9/181 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T  
Sbjct: 16  WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAA 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D+P F+ I  E  D    +    +AHN  FD  F+ AE +   +  L    ++ T+ 
Sbjct: 73  MLDDQPQFADIAGEVVDVL--RGRTLVAHNVAFDYAFLAAEAEIA-EAELPVDFVMCTVE 129

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +G+    +  H A  D+ +L+ +    +    +++     
Sbjct: 130 LARRLQLGVDNLRLETLAAHWGVP--QQRPHDAFDDARVLTGILAAALESARELDVWLPV 187

Query: 188 N 188
           +
Sbjct: 188 H 188


>gi|308125815|ref|ZP_05777630.2| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|308111533|gb|EFO49073.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
          Length = 247

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 27/202 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
               ++  +  D ETTGL++++D I+ IG V   +D  + + +    + PN R+ + E++
Sbjct: 50  TPLKEVPFVSVDFETTGLNAEDDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESV 108

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGITD  +K+ P  + I  E  D    +    + H    +  F    L     + +  
Sbjct: 109 VIHGITDSEVKNAPQLTQILGEILDALAGK-VVLV-HYKNIERQFFYNALLNTIGEGI-Q 165

Query: 121 SRIIDTLSIARRKHPS--------------SRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             ++DTL I                         L    +RYG+       H AL D+  
Sbjct: 166 FPVVDTLDIEYALQRRECSGIWNKLKGKKPGSVRLGHARERYGLP--AYQPHHALTDALA 223

Query: 167 LSDVYIKMMVGGSQINFGFKTN 188
            ++++       +Q+ + F  +
Sbjct: 224 TAELF------QAQLQYHFNRD 239


>gi|241894744|ref|ZP_04782040.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides
           ATCC 33313]
 gi|241871956|gb|EER75707.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides
           ATCC 33313]
          Length = 177

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET    +K    + +G   + D    +  F   + P+         ++HGIT
Sbjct: 1   MNFIAMDFETA--SAKRYSAVSLGLAVVRDNKLVDE-FYTLIKPDSF-FDKRNTRIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +++ P F  ++ +   F+   N   IAHNA FD G +   L   + D L     +DT
Sbjct: 57  EADVRNAPIFPEVWEQIQQFYTP-NQLVIAHNAPFDNGVLRETLTHYDID-LPHYLSLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +  +R+ +P    + LN++    GI + H   H AL D+   +++ ++
Sbjct: 115 VRTSRKLYPELPNHKLNTVAAALGIDLKHH--HNALNDTVAAAEILVR 160


>gi|153836296|ref|ZP_01988963.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810]
 gi|149750571|gb|EDM61316.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810]
          Length = 247

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 81/202 (40%), Gaps = 27/202 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
               ++  +  D ETTGL+++ D I+ IG V   +D  + + +    + PN R+ + E++
Sbjct: 50  TPLKEVPFVSVDFETTGLNAEEDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESV 108

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGITD  +K+ P  + I  E  D    +    + H    +  F    L     + +  
Sbjct: 109 VIHGITDSEVKNAPQLTQILGEILDALAGK-VVLV-HYKNIERQFFYNALLNTIGEGI-Q 165

Query: 121 SRIIDTLSIARRKHPS--------------SRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             ++DTL I                         L    +RYG+       H AL D+  
Sbjct: 166 FPVVDTLDIEYALQRRECSGIWNKLKGKKPGSVRLGHARERYGLP--AYQPHHALTDALA 223

Query: 167 LSDVYIKMMVGGSQINFGFKTN 188
            ++++       +Q+ + F  +
Sbjct: 224 TAELF------QAQLQYHFNRD 239


>gi|28898498|ref|NP_798103.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260879545|ref|ZP_05891900.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260894980|ref|ZP_05903476.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|28806716|dbj|BAC59987.1| putative DNA polymerase III, epsilon subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308086038|gb|EFO35733.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308093371|gb|EFO43066.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
          Length = 248

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 27/202 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
               ++  +  D ETTGL++++D I+ IG V   +D  + + +    + PN R+ + E++
Sbjct: 51  TPLKEVPFVSVDFETTGLNAEDDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESV 109

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGITD  +K+ P  + I  E  D    +    + H    +  F    L     + +  
Sbjct: 110 VIHGITDSEVKNAPQLTQILGEILDALAGK-VVLV-HYKNIERQFFYNALLNTIGEGI-Q 166

Query: 121 SRIIDTLSIARRKHPS--------------SRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             ++DTL I                         L    +RYG+       H AL D+  
Sbjct: 167 FPVVDTLDIEYALQRRECSGIWNKLKGKKPGSVRLGHARERYGLP--AYQPHHALTDALA 224

Query: 167 LSDVYIKMMVGGSQINFGFKTN 188
            ++++       +Q+ + F  +
Sbjct: 225 TAELF------QAQLQYHFNRD 240


>gi|41406411|ref|NP_959247.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|254773395|ref|ZP_05214911.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|41394760|gb|AAS02630.1| DnaQ [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 329

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 25/214 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RII +  + L    K  ++    L P      P    +HG+T  
Sbjct: 17  WAVIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPG---VDPGPTHVHGLTAA 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D+P F+ I  +  +    +    +AHN  FD  F+ AE +    + L    ++ T+ 
Sbjct: 74  MLEDQPQFADIAGDVVEVL--RGRTLVAHNVAFDYAFLAAEAELAGIE-LPVDTVMCTVE 130

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +G+  + +  H A  D+ +L+ V    +            
Sbjct: 131 LARRLDLGIDNLRLETLAAHWGV--TQQRPHDAFDDAMVLTGVLASAL------------ 176

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
              +  +E    +P   + +R  P   R+T +EL
Sbjct: 177 ---QRARERDIWLPVHPVTRRRWP-NGRVTHDEL 206


>gi|302873810|ref|YP_003842443.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|307689948|ref|ZP_07632394.1| DNA polymerase III subunit epsilon [Clostridium cellulovorans 743B]
 gi|302576667|gb|ADL50679.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
          Length = 306

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K +    IG V + +     R     + P   +  P  + +HGI 
Sbjct: 1   MNFIAIDFETA--NEKRNSPCSIGIVVVKNGEVVER-IHHLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++++P F  ++++    FNE  +  IAHNA FD+  +    +  + + L   + I T
Sbjct: 58  PAMVENEPEFHEVWAKIKHHFNE--SLVIAHNASFDISVLRKSAELYDIE-LPSFKYICT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +A+  +    N  LN++    G    H   H AL D+   S++ + +
Sbjct: 115 MRLAKNFYRGIENAKLNTVNDFLGYEFKH---HDALYDALACSNILLNI 160


>gi|148244632|ref|YP_001219326.1| ribonuclease T [Candidatus Vesicomyosocius okutanii HA]
 gi|146326459|dbj|BAF61602.1| ribonuclease T [Candidatus Vesicomyosocius okutanii HA]
          Length = 193

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 19/190 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NG 52
           M+ K+++R    +V DIET G + K D ++EI  +    + ++     +     + P  G
Sbjct: 1   MLIKDRIRGYLPVVIDIETGGFNEKTDAMLEICTIIIGIDKMNNLYPKKPQHFHIEPFKG 60

Query: 53  RKNSPEALKLHGIT-----DEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVG 104
               P A+K + I         +K+  +   I+++ +    +++      + HNA FD+G
Sbjct: 61  SILEPSAIKFNSIDVDNPFRMAVKEVDAIKQIYTKVYTELKQKDCTRAILVGHNAFFDLG 120

Query: 105 FINAELQRINKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+ A   R     P      +DT+S++   +      L    ++  I       H AL D
Sbjct: 121 FLRAATNRCKLKSPFHQFSTLDTVSLSALCY--GETVLAKAIRKADIEWDDTCAHSALYD 178

Query: 164 SHLLSDVYIK 173
           +   ++++ K
Sbjct: 179 TQKTAELFCK 188


>gi|260901010|ref|ZP_05909405.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308110780|gb|EFO48320.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
          Length = 248

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 81/202 (40%), Gaps = 27/202 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
               ++  +  D ETTGL+++ D I+ IG V   +D  + + +    + PN R+ + E++
Sbjct: 51  TPLKEVPFVSVDFETTGLNAEEDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESV 109

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGITD  +K+ P  + I  E  D    +    + H    +  F    L     + +  
Sbjct: 110 VIHGITDSEVKNAPQLTQILGEILDALAGK-VVLV-HYKNIERQFFYNALLNTIGEGI-Q 166

Query: 121 SRIIDTLSIARRKHPS--------------SRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             ++DTL I                         L    +RYG+       H AL D+  
Sbjct: 167 FPVVDTLDIEYALQRRECSGIWNKLKGKKPGSVRLGHARERYGLP--AYQPHHALTDALA 224

Query: 167 LSDVYIKMMVGGSQINFGFKTN 188
            ++++       +Q+ + F  +
Sbjct: 225 TAELF------QAQLQYHFNRD 240


>gi|163848275|ref|YP_001636319.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526189|ref|YP_002570660.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl]
 gi|163669564|gb|ABY35930.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450068|gb|ACM54334.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl]
          Length = 232

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 17/185 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNG-RKNSPEA 59
           +   ++   V D+ETTGLD+++D +I +GAV + +      +T+   + P   R+ S E+
Sbjct: 30  LPWREVPYTVIDVETTGLDTRHDALIAVGAVNIENGRVLLKQTWYSLIKPPPDREPSVES 89

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ----RINK 115
           +++H +T   L++ P    + +E       +    + H A+ DV FINA L+    ++ +
Sbjct: 90  IRVHHLTPAELQNAPPAEEVLAELLRRIAGR--VLVVHVAQVDVRFINAALKPFGGKLRR 147

Query: 116 DPLDPSRIIDTLSIARRKHPSSRND-------LNSLCKRYGITISHRSKHGALLDSHLLS 168
             LD +R+  TL +  R      +D       L  L    G+ +   ++H AL D+   +
Sbjct: 148 PILDTARLALTLHMNARWLGEQPHDMPDPAIELRGLATALGLPVY--AQHNALNDAVTTA 205

Query: 169 DVYIK 173
            ++I 
Sbjct: 206 QLFIA 210


>gi|283798273|ref|ZP_06347426.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
 gi|291074053|gb|EFE11417.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
          Length = 244

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 14/176 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLC-PNGRKNSPEALKLHG 64
           + FD ETTGL++++ +IIE+ A+ +    +       +  VF+  P G +   + ++L G
Sbjct: 15  VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQKIVELTG 74

Query: 65  ITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           ITDE L+ +  + +   + F +         +AHNA+FD+ F    L+R      +  + 
Sbjct: 75  ITDEQLENEGITETEAAARFTELIGGGRVLLVAHNAQFDLLFTAEMLRRHGNGGPEVLKA 134

Query: 124 ID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D     T+   RR +P   + L +    Y +    ++ H A+ D   L +V   M
Sbjct: 135 ADYLDSLTVYKDRRAYP---HKLANAILTYKLEDKVQNSHRAIDDVAALFEVCKAM 187


>gi|56808338|ref|ZP_00366097.1| COG1199: Rad3-related DNA helicases [Streptococcus pyogenes M49
           591]
          Length = 819

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 80/178 (44%), Gaps = 14/178 (7%)

Query: 1   MIRKNKMRKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M +K   +  V D+E T  G ++   ++     + ++  +K   +++  + P+       
Sbjct: 1   MTQKKLRKYAVVDLEATVAGPNASIIQV----GIVIIQGNKIIDSYETDVNPH-ESLDEH 55

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + L GITD+ L   P F  +    +     ++  ++AHN KFD   +   L     +  
Sbjct: 56  IVHLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELT 113

Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P   +DT+ +A+   P   + +L  L ++  I ++    H A+ D+   + ++++++
Sbjct: 114 IP--RVDTVELAQLFFPRFEKYNLGHLSRQLNIDLA--EAHTAIADARATAILFLRLL 167


>gi|168206308|ref|ZP_02632313.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
 gi|170662180|gb|EDT14863.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
          Length = 302

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG   + +       +   + P   +  P  + +HGI 
Sbjct: 1   MDFVAIDFETA--NEKRNSACSIGLTVVKNNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++++ +F+ I+ E  D+ +      IAHNA FD+  +   L   +  P        T
Sbjct: 58  PEDVENERTFNEIWEEIKDYID--GNLVIAHNAAFDISVLRKTLDFYDI-PYPDFEYACT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +A+  + S   + L ++ +  G   SH   H A  D+   +++ + +
Sbjct: 115 VVMAKNYYKSLPNHKLGTVSEALGFEFSH---HHAGEDARACANILLNI 160


>gi|53714270|ref|YP_100262.1| DNA polymerase III subunit epsilon [Bacteroides fragilis YCH46]
 gi|60682326|ref|YP_212470.1| putative DNA polymerase III subunit epsilon [Bacteroides fragilis
           NCTC 9343]
 gi|253564786|ref|ZP_04842242.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5]
 gi|265766238|ref|ZP_06094279.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
 gi|52217135|dbj|BAD49728.1| DNA polymerase III epsilon chain [Bacteroides fragilis YCH46]
 gi|60493760|emb|CAH08550.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis
           NCTC 9343]
 gi|251946251|gb|EES86628.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5]
 gi|263253906|gb|EEZ25371.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
 gi|301163800|emb|CBW23355.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis
           638R]
          Length = 257

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 12/178 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +  +DRI+EI  +++  + ++ ++T +  + P       E+
Sbjct: 1   MKLNLKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNEESKTLR--INPE-MPIPAES 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI D  + D P+F  +     +  + +  +    N  +FD+  +  E  R   D  
Sbjct: 58  SAVHGIYDADVADCPTFKEVAKSIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVDID 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMM 175
              R    + +    H   +  L +  K Y G  +     H A  D+    +V +  +
Sbjct: 116 MSKRKF--VDVQVIFHKMEQRTLTAAYKFYCGRNLED--AHTAEADTRATYEVLMAQL 169


>gi|169347247|ref|ZP_02866186.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
 gi|169296643|gb|EDS78774.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
          Length = 302

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG   + +       +   + P   +  P  + +HGI 
Sbjct: 1   MDFVAIDFETA--NEKRNSACSIGLTVVKNNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++++ +F+ I+ E  D+ +      IAHNA FD+  +   L   +  P        T
Sbjct: 58  PEDVENERTFNEIWEEIKDYID--GNLVIAHNAAFDISVLRKTLDFYDI-PYPDFEYACT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +A+  + S   + L ++ +  G   SH   H A  D+   +++ + +
Sbjct: 115 VVMAKNYYKSLPNHKLGTVSEALGFEFSH---HHAGEDARACANILLNI 160


>gi|325269040|ref|ZP_08135661.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
           multiformis DSM 16608]
 gi|324988661|gb|EGC20623.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
           multiformis DSM 16608]
          Length = 284

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 82/187 (43%), Gaps = 15/187 (8%)

Query: 2   IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  +  ++FD+E TGLD  NDRII+I  ++     K  R   +F+ P G+    E  
Sbjct: 1   MKLNLTKPLVIFDLEATGLDLVNDRIIQISFIKAYPDGKEERE-NIFINP-GKPIPSEVT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
           +L GI+DE + + P+F     E  D       ++   N  +FDV  +  E  R   D   
Sbjct: 59  QLTGISDEDVAEAPTFKQKAKELAD--KFSGCDFAGFNSNRFDVPMLAEEFLRAGVDFDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVY---IK 173
             SR+ID  +I    H   R +L +  K Y G  +      H A  D+     V    + 
Sbjct: 117 TKSRLIDAQNI---YHKMERRNLAAAYKFYCGRKMEEDFEAHRADQDTEATWRVLQGELD 173

Query: 174 MMVGGSQ 180
           M   G Q
Sbjct: 174 MYAPGRQ 180


>gi|227877226|ref|ZP_03995299.1| DNA polymerase III alpha chain [Lactobacillus crispatus JV-V01]
 gi|256842782|ref|ZP_05548270.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|256848912|ref|ZP_05554346.1| DNA polymerase subunit III alpha [Lactobacillus crispatus MV-1A-US]
 gi|293380675|ref|ZP_06626725.1| exonuclease [Lactobacillus crispatus 214-1]
 gi|312977700|ref|ZP_07789447.1| exonuclease [Lactobacillus crispatus CTV-05]
 gi|227863082|gb|EEJ70528.1| DNA polymerase III alpha chain [Lactobacillus crispatus JV-V01]
 gi|256614202|gb|EEU19403.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|256714451|gb|EEU29438.1| DNA polymerase subunit III alpha [Lactobacillus crispatus MV-1A-US]
 gi|290922772|gb|EFD99724.1| exonuclease [Lactobacillus crispatus 214-1]
 gi|310895439|gb|EFQ44506.1| exonuclease [Lactobacillus crispatus CTV-05]
          Length = 177

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHYPESA--CSLALVMVRNNKIVDR-FYTVINPQ-MPFDARNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K+ P+ + ++    +   +      AHNA+FD   +   L R   +      +IDT
Sbjct: 57  AEDVKNAPTMAEVWPHIKE-LYQPGMLVAAHNARFDTNVMRQSLARYGIEE-PHYLVIDT 114

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L+ ++   P    + L+++ +   + + H   H AL DS   + + IK
Sbjct: 115 LASSKLLEPELPDHKLDTVSEALNVELWHH--HNALSDSEACAGILIK 160


>gi|238855548|ref|ZP_04645851.1| DNA polymerase III [Lactobacillus jensenii 269-3]
 gi|260665137|ref|ZP_05865987.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US]
 gi|282932326|ref|ZP_06337761.1| DNA polymerase III [Lactobacillus jensenii 208-1]
 gi|238831832|gb|EEQ24166.1| DNA polymerase III [Lactobacillus jensenii 269-3]
 gi|260561191|gb|EEX27165.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US]
 gi|281303547|gb|EFA95714.1| DNA polymerase III [Lactobacillus jensenii 208-1]
          Length = 316

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 10/170 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             + DIETTGL    DR+ E+  +++ +    ++  Q+   P   K      KL+GI ++
Sbjct: 35  YTMLDIETTGLSPYRDRVTELAGIKVRNGKVVDKYSQLVKHPKNNKVPQFITKLNGIDEK 94

Query: 69  F-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L          ++F +F  E     + +N  FD+ FI    ++ N + L  +  ID L
Sbjct: 95  LILTQGIPVKEAITDFRNFIGED--VIVGYNVNFDLNFIYDLCEKFNLERLSNN-YIDVL 151

Query: 128 SIARRKH-PSSRNDLNSLCKRYGITISHRSKHGAL---LDSHLLSDVYIK 173
             +R      S N L    +R GI  S    H  L   LD+  + D+Y K
Sbjct: 152 HFSRVFFKKESHNRLLDCIQRLGI--SESEAHRGLKDSLDTKAVFDIYQK 199


>gi|168215255|ref|ZP_02640880.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|168216790|ref|ZP_02642415.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
 gi|170713347|gb|EDT25529.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|182381117|gb|EDT78596.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
          Length = 302

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG   + D       +   + P   +  P  + +HGI 
Sbjct: 1   MDFVAIDFETA--NEKRNSACSIGLTVVKDNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++++ +F+ I+ E  D+ +      IAHNA FD+  +   L   +  P        T
Sbjct: 58  PEDVENERTFNEIWEEIKDYID--GNLVIAHNAAFDISVLRKTLDFYDI-PYPDFEYACT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +A+  + S   + L ++ +  G   SH   H A  D+   +++ + +
Sbjct: 115 VVMAKNYYKSLPNHKLGTVSEALGFEFSH---HHAGEDARACANILLNI 160


>gi|110799993|ref|YP_696096.1| DNA polymerase III subunit epsilon [Clostridium perfringens ATCC
           13124]
 gi|168209994|ref|ZP_02635619.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|110674640|gb|ABG83627.1| exonuclease family protein [Clostridium perfringens ATCC 13124]
 gi|170711840|gb|EDT24022.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 302

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG   + D       +   + P   +  P  + +HGI 
Sbjct: 1   MDFVAIDFETA--NEKRNSACSIGLTVVKDNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++++ +F+ I+ E  D+ +      IAHNA FD+  +   L   +  P        T
Sbjct: 58  PEDVENERTFNEIWEEIKDYID--GNLVIAHNAAFDISVLRKTLDFYDI-PYPDFEYACT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +A+  + S   + L ++ +  G   SH   H A  D+   +++ + +
Sbjct: 115 VVMAKNYYKSLPNHKLGTVSEALGFEFSH---HHAGEDARACANILLNI 160


>gi|328958152|ref|YP_004375538.1| DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4]
 gi|328674476|gb|AEB30522.1| DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4]
          Length = 177

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 73/169 (43%), Gaps = 9/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET     +      I A+ ++  S+    +   + P         +++HGIT
Sbjct: 1   MNFVALDFETA--SHQRHSACSI-ALTVVKNSQIVDHYYSLIKPETEFF-WRNVQIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++  PSF  ++ +   FF  +N   +AHN  FD G +   L           + + T
Sbjct: 57  EDDVQTAPSFPEVWEKIKPFFK-ENKLIVAHNLPFDRGVLQGCLDYYQLQQ-PHFQTLCT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  +R+       + LN++C   GI + +   H AL DS+  + + + +
Sbjct: 115 VQSSRKLITEIPNHKLNTVCDHLGIRLDNH--HNALEDSNACAAILLYL 161


>gi|310767851|gb|ADP12801.1| exodeoxyribonuclease X [Erwinia sp. Ejp617]
          Length = 221

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V++++    N      + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGLQGG---VVEVASVDVINGQILN-PMSDLISPD-RPISRQAMAVHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP+       +       +  ++AHNA FD   +          P      I T+++A
Sbjct: 59  RGKPAIEQAIGRYH-----GSPFYVAHNASFDRRML----------PEMHGDWICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITIS---HRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L +   + +S       H AL D ++ + + +++M
Sbjct: 104 RRLWPGLKYTNEALRQSLQLEVSPPADLHAHRALYDCYVTAALLMRIM 151


>gi|295692577|ref|YP_003601187.1| DNA polymerase iii, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus crispatus ST1]
 gi|295030683|emb|CBL50162.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus crispatus ST1]
          Length = 177

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHYPESA--CSLALVMVRNNKIVDR-FYTVINPQ-MPFDARNIQIHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K+ P+ + ++    +   +      AHNA+FD   +   L R   +      +IDT
Sbjct: 57  AEDVKNAPTMAEVWPHIKE-LYQPGMLVAAHNARFDTNVMRQSLARYGIEE-PHYLVIDT 114

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L+ ++   P    + L+++ +   + + H   H AL DS   + + IK
Sbjct: 115 LASSKLLEPELPDHKLDTVSEALNVELWHH--HNALSDSEACAGILIK 160


>gi|332876762|ref|ZP_08444520.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685321|gb|EGJ58160.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 256

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 12/169 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTG++   DRI+E+  +++        +  + + P        +  +HGI DE 
Sbjct: 10  VFFDLETTGINITTDRIVELCYIKVYPNGN-EESKSMRINPEMH-IPESSSAIHGIYDED 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-LDPSRIIDTL 127
           + D P+F  +  E  +    +  ++   N  +FDV  +  E  R   D  +   + ID  
Sbjct: 68  VADCPTFKQVARELANTI--KGCDFAGFNSNRFDVPMLVEEFLRAGIDIDIRKRKFIDVQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMM 175
           +I  +     R  L++  K Y G  + +   H AL D+    +V +  +
Sbjct: 126 NIYHKL---ERRTLSAAYKFYCGKDLEN--AHSALADTRATYEVLMAQL 169


>gi|330836252|ref|YP_004410893.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM
           17374]
 gi|329748155|gb|AEC01511.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM
           17374]
          Length = 231

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   +  ++    +G   +    K   T+   + P      P  +++HGIT
Sbjct: 24  MEFVALDFETA--NGTHESACSLGLALMDGTGKLIDTWYQLIKPPSSFFDPANIEIHGIT 81

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E + D PSF  ++S   +F  ++    IAHNA FD+  + A L     + +       T
Sbjct: 82  PENVADAPSFDKVWSAAREFIADR--LVIAHNATFDMTILKAMLHWYKME-IPRIGYACT 138

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L ++R+  P   N  L +L + +G        H AL D+   + ++ K
Sbjct: 139 LRLSRKVWPEMNNYKLTTLSEVFGFDY---RAHYALDDAVNCAKLFYK 183


>gi|256851899|ref|ZP_05557287.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN]
 gi|260661840|ref|ZP_05862750.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN]
 gi|282931860|ref|ZP_06337341.1| DNA polymerase III [Lactobacillus jensenii 208-1]
 gi|256615857|gb|EEU21046.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN]
 gi|260547309|gb|EEX23289.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN]
 gi|281304023|gb|EFA96144.1| DNA polymerase III [Lactobacillus jensenii 208-1]
          Length = 317

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 70/171 (40%), Gaps = 12/171 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67
             + DIETTGL    DRI E+  +++ +  K    +   +  P   K      KL+GI +
Sbjct: 35  YTMLDIETTGLSPYRDRITELAGIKVRNG-KVVAEYSQLVKYPKDNKVPRFITKLNGIDE 93

Query: 68  EF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L +        +EF +F        + +N  FD+ FI    ++     L  +  ID 
Sbjct: 94  ALILANGMPVKEAITEFRNFIG--GDVIVGYNVNFDLNFIYDLCEKFQLKKLSNN-YIDV 150

Query: 127 LSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGAL---LDSHLLSDVYIK 173
           L  +R      S N L    +R GI  S    H  L   LD+  + D+Y K
Sbjct: 151 LHFSRVFFKKESHNRLLDCIRRLGI--SESEAHRGLKDSLDTKAVFDIYRK 199


>gi|256372239|ref|YP_003110063.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008823|gb|ACU54390.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 475

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 77/207 (37%), Gaps = 13/207 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  + D+ETTG  S  D + E+  + + +        Q  +    R   P  + L GI++
Sbjct: 17  RFAILDVETTGAASGADELTEVAMMVVQEGRALA-HLQSLVH-TDRPIPPAIVALTGISN 74

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + D PS  ++          +    + HN +FD  F+ A         L    ++DTL
Sbjct: 75  ELVADAPSARTVIERTARLL--EGTVMVGHNVRFDRSFLGAAADAAGI-TLPEVPVLDTL 131

Query: 128 SIARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +++R         + L +L     +       H A+ D      +  +++        G 
Sbjct: 132 TLSRVLLDGEVPNHRLATLAHYLQLPPP---SHRAMADVVTTVALLHRLIERAG--ALGV 186

Query: 186 KTNEDRF-FKEEKKTVPNISLLKRDKP 211
            T E     +  +++  ++    R  P
Sbjct: 187 TTLEGLLALRRPRRSGADLERQARRLP 213


>gi|317011686|gb|ADU85433.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           SouthAfrica7]
          Length = 287

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 79/204 (38%), Gaps = 10/204 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +        L GI  E  
Sbjct: 75  FIDLETTGSCPIKHEILEIGAVQVSGGKIINR-FETLVK--VKSVPDYISDLTGIAYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            + PS      E   F    N+ ++AHNA FD  F+          PL   + + TL ++
Sbjct: 132 LNAPSVYEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
           RR   S R  L+ L +  G  I     H A  D+     ++   ++     N+   T + 
Sbjct: 189 RRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNL--PNYVKTTMDL 244

Query: 191 RFFKEEKKTVPNISLLKRDKPLFT 214
             F +    +       R + + +
Sbjct: 245 IDFSKCANALIKRPPRARHQEIPS 268


>gi|308177924|ref|YP_003917330.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis
           Re117]
 gi|307745387|emb|CBT76359.1| putative DNA polymerase III subunit epsilon [Arthrobacter
           arilaitensis Re117]
          Length = 227

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 23/220 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +K   I FD+ETTG+D+   RI+    V L          +  + P G +    A 
Sbjct: 1   MTEWHKGLAIGFDLETTGVDTNTARIVTASVVLLDAEGNVVNNREWLVDP-GVEIPEAAA 59

Query: 61  KLHGITDE--FLKDKPSFSSIFSEFWDFFN--EQNAEWIAHNAKFDVGFINAELQRINKD 116
            +HGI+ E    +  P+  S+  E  +      + A  +A NA +D   + +E  R + +
Sbjct: 60  AVHGISTEKARAEGAPAKQSV-EEILNLLKFASEQAPIVAFNASYDFSVLYSEAVRYDLE 118

Query: 117 PLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK- 173
           P  P  +ID   I ++  +    +  L + C+ YG+ + +   H +L D+    +V  + 
Sbjct: 119 PFFPGNVIDPFIIDKQVDRFRKGKRTLAAACEFYGVVLEN--AHTSLADAVACVEVARQL 176

Query: 174 -----------MMVGGSQINFGFKTNEDRFFKEEKKTVPN 202
                      M++ G QI +  K   + F    +KT P 
Sbjct: 177 GERYPQLQVDPMVLHGWQIGWA-KEQAESFQAYLRKTKPE 215


>gi|327394158|dbj|BAK11580.1| exodeoxyribonuclease X exoX [Pantoea ananatis AJ13355]
          Length = 223

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 88/230 (38%), Gaps = 28/230 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET GL      ++E+ +V+++D    N      + P+ R  S +A+ +H IT
Sbjct: 1   MMLRVIDTETCGLQGG---VVEVASVDVIDGQIVN-PMSDLVSPD-RPISRQAMAVHRIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  +  KP                 + + +AHNA FD   +          P      I 
Sbjct: 56  EAMVMGKPPIEEAI------LRYHGSPFYVAHNASFDRRML----------PEMHGEWIC 99

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITIS---HRSKHGALLDSHLLSDVYIKMM-VGGSQI 181
           T+++AR+  P  +    +L     + ++       H AL D ++ + + I++M + G + 
Sbjct: 100 TMTLARQLWPGIKYGNQALRHSLKLDVTPPADLHAHRALYDCYVTAALLIRIMDLSGWRA 159

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
           +    +   +   +    +P      +   +  R     L      ++ L
Sbjct: 160 DE--MSLRSQPAAQRDDVLPFGKYRGQALAVVARKDPGYLKWMLDNVKDL 207


>gi|283783236|ref|YP_003373990.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis
           409-05]
 gi|283441075|gb|ADB13541.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis
           409-05]
          Length = 359

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 20/182 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC---------PNGRKNSPEA 59
            +V D ETTGL+SK D+IIEIGAV+ +D       FQ  +                  E 
Sbjct: 178 FVVIDCETTGLNSKVDKIIEIGAVKFIDGKI--EEFQKLININCDSVSNFNKNNFIPNEI 235

Query: 60  LKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP- 117
           ++L GIT   L+           EF +F   +    + +N +FD+ F+N+ L  +++   
Sbjct: 236 IELTGITSNMLESYGVRLDLALKEFINFV--ERLPVLGYNVQFDMSFLNSALSSLDERFD 293

Query: 118 --LDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             L  ++I D     +++    +N  L ++   Y I  +    H ALLD+ L + +   +
Sbjct: 294 HSLSINKIFDISRFVKKEKKFLKNYQLKTVLHEYNI--AESVPHRALLDARLTAHLVFNL 351

Query: 175 MV 176
             
Sbjct: 352 TE 353


>gi|154333792|ref|XP_001563151.1| mitochondrial DNA polymerase I protein B [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134060163|emb|CAM45570.1| putative mitochondrial DNA polymerase I protein B [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 1419

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 35/203 (17%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +    R + FDIETTGL+   D I+E+   + ++ S    TF   + P  R  SP  + +
Sbjct: 759 KLKTYRIVFFDIETTGLNPSTDAIVEVAMFDPIENS----TFHTLVNPQ-RPISPRTVGI 813

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNA--------EWIAHN-AKFDVGFINAELQRI 113
           H IT+E ++D P+   +      +     A          + HN    D   +   L+  
Sbjct: 814 HHITNEMVRDAPTVDVVAKSIGQYLRLDMASYNPHEILVLVGHNVFSLDQPMLRRALECY 873

Query: 114 NKD-PLDPSRIIDTLS-------IARRKHPSSRND------------LNSLCKRYGITIS 153
             +  LD     D+L+       + R +   +R +            L+ L     +   
Sbjct: 874 APECQLDGVLFCDSLALLNSHRSVLRWRLRGNRANQPLMEALASSLRLSRLITALNVRPE 933

Query: 154 HRSKHGALLDSHLLSDVYIKMMV 176
               H A  D+  L  V + ++ 
Sbjct: 934 G-DLHRADTDTKALWYVLVNILG 955


>gi|227889650|ref|ZP_04007455.1| DNA-directed DNA polymerase III [Lactobacillus johnsonii ATCC
           33200]
 gi|268319793|ref|YP_003293449.1| DNA polymerase III epsilon subunit [Lactobacillus johnsonii FI9785]
 gi|227849793|gb|EEJ59879.1| DNA-directed DNA polymerase III [Lactobacillus johnsonii ATCC
           33200]
 gi|262398168|emb|CAX67182.1| DNA polymerase III epsilon subunit [Lactobacillus johnsonii FI9785]
          Length = 177

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET     ++     +  V + +    +R F   + P         +++HGIT
Sbjct: 1   MNFTAMDFETANSHPESA--CSLALVMVRNNEIVDR-FYTVINPQ-MPFDGRNIRIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K+ P+ + ++ +      +      AHNA+FD   +   L R N  P      IDT
Sbjct: 57  AEDIKNAPTMAEVWPKIKK-LYQPGMLVAAHNARFDCRVMEKSLARYNI-PAPHYFAIDT 114

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L+ ++   P    + L+++ +   I + H   H AL DS   + + I+
Sbjct: 115 LATSKAFEPYLPNHKLDTVSEALNINLWHH--HNALSDSEACAGILIE 160


>gi|325508152|gb|ADZ19788.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum EA
           2018]
          Length = 317

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 10/174 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I + +M+    D ET   + K +    IG V + D     ++    + P   +  P  + 
Sbjct: 7   IWRKEMKFTAIDFETA--NEKRNSPCSIGIVVVKDGHVVEKSHH-LIRPKEMRFMPINIG 63

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI    ++ +P F  ++ +   +F+  +   IAHNA FD+  +    +  N + L   
Sbjct: 64  IHGIRPAMVEKEPEFDKVWEKIKHYFD--DTLVIAHNASFDISVLRKSAELYNIE-LPEF 120

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             I T+ +AR  +    N  LN++    G    H   H AL D+   S++ + +
Sbjct: 121 NYICTMKLARNFYKGIENAKLNTVNNFLGYEFRH---HDALYDALACSNIMLSI 171


>gi|300776313|ref|ZP_07086171.1| exonuclease [Chryseobacterium gleum ATCC 35910]
 gi|300501823|gb|EFK32963.1| exonuclease [Chryseobacterium gleum ATCC 35910]
          Length = 254

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K      +FD+ETTG +   DRI+EI  +++  D S+ ++T++  + P       E 
Sbjct: 1   MNLKLHKPLCIFDLETTGTNIGKDRIVEICILKVNPDASRESKTWR--VNPE-MPIPKEC 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-L 118
            ++HGI DE +KD P+F  I ++  +  +  +      N +FDV  +  EL R+  D  L
Sbjct: 58  SEIHGIYDEDVKDAPTFRDIAAKIMEMISGSDLGGFNSN-RFDVPLLAEELLRVGMDFDL 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVY 171
           +  R++D  +I  +K P    +L +  + Y G T+ +   H A  D     +V 
Sbjct: 117 NKFRLVDAQTIFHKKEP---RNLGAAYQFYCGKTLEN--AHSAEADVMATFEVL 165


>gi|328479965|gb|EGF49008.1| DNA polymerase III PolC [Lactobacillus rhamnosus MTCC 5462]
          Length = 132

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 5/125 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFD+ETTGL +  D++IE+ AV++ D    ++ F+  + P G   S   + L  ITD+
Sbjct: 13  YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDP-GFPLSELTINLTHITDD 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    S   +F  F  F +   A  + HN  FDVGF++   +R     +D + +IDTL 
Sbjct: 71  MVHGSKSEEEVFRLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 127

Query: 129 IARRK 133
           ++R  
Sbjct: 128 LSRML 132


>gi|126010887|ref|YP_001039857.1| putative exonuclease [Vibrio phage VP882]
 gi|123203897|gb|ABM73410.1| putative exonuclease [Vibrio phage VP882]
          Length = 206

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 23/192 (11%)

Query: 1   MIRKNKMRK------IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           MI K + ++      ++ D ETTGLDSK   IIEI  ++       +      + P    
Sbjct: 1   MIPKQQAQQWLANNALILDTETTGLDSK-AEIIEISIIDCAGNVLLD----TLVKPT-AP 54

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              +A ++HGIT+E + + P++  ++  F      +  E + +NA +D+  I    +R +
Sbjct: 55  IPEDATRIHGITNEMVANAPTWPEVYDLFVPLV--EGRELVIYNADYDLRMIRQADERND 112

Query: 115 KDPLDPSRIIDTLSIA-----RRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLL 167
              +        L+ A        +        L +  K+ G+ I  +  H AL D  + 
Sbjct: 113 LLNIRTQADCAMLAYAEFYGQWDDYRGQWKWQRLGNAAKQQGVVIEGK-AHRALADCQMT 171

Query: 168 SDVYIKMMVGGS 179
             V I  M G  
Sbjct: 172 LGV-IASMAGQW 182


>gi|313156971|gb|EFR56403.1| exonuclease [Alistipes sp. HGB5]
          Length = 255

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 90/217 (41%), Gaps = 14/217 (6%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           ++ N  R I+F D+ETTG+D+  DRI+EI   +++ D  +  +T    L P       EA
Sbjct: 1   MKLNLKRPIIFFDLETTGVDTAKDRIVEISMAKIMPDGEEIVKT--RKLNPEMH-IPEEA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-P 117
             +HGITDE +KD P+F+ +      F   +  ++   N  +FD+  +  E  R   D  
Sbjct: 58  TAIHGITDEDVKDCPTFAQVAKSLEQFI--RGCDFGGFNSNRFDLPVLVEEFLRAGVDVD 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
               + ID  +I    H   +  L +  K Y         H A  D+    +V    +  
Sbjct: 116 FKRRKFIDVQNI---FHKKEQRTLVAAYKFY-CDKDLDDAHSAEADTLATYEVLKAQLER 171

Query: 178 GSQI-NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
              + N   K  E     E       I   ++ + +F
Sbjct: 172 YPDLENDIDKLAEFSTRAETADYAGRILFNEKGEEVF 208


>gi|163789521|ref|ZP_02183959.1| exonuclease [Carnobacterium sp. AT7]
 gi|159875053|gb|EDP69119.1| exonuclease [Carnobacterium sp. AT7]
          Length = 177

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 9/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET    ++      + A+ ++  SK    +   + P         +++HGIT
Sbjct: 1   MNFVALDFETA--SNQRHSACSV-ALTVVRKSKIVDHYYSLIKPETEFF-WRNVQVHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +KD PSF  ++ +   FF  +N   +AHN  FD G +   L   +  P    + + T
Sbjct: 57  ENDVKDAPSFPEVWEQIKPFF-TENKLIVAHNLPFDRGVLQGCLDYYDL-PQPHFQTLCT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  +R+       + LN++C    I++  ++ H AL DS+  + + + +
Sbjct: 115 VQSSRKLITEIPNHKLNTVCDHLNISL--KNHHNALEDSNACAAILLYL 161


>gi|149194547|ref|ZP_01871643.1| Exonuclease [Caminibacter mediatlanticus TB-2]
 gi|149135291|gb|EDM23771.1| Exonuclease [Caminibacter mediatlanticus TB-2]
          Length = 204

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 11/171 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTGLD+K D II IGAV + +     ++ F +++    +K S +++K+H IT  
Sbjct: 31  VVIDTETTGLDTKKDEIISIGAVIVKNNKILLSKKFHIYVK-TTKKISNDSIKIHKITPT 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127
            LK+         EF +F   QN   + +  +FD+  IN   ++ +     +    + +L
Sbjct: 90  TLKNAVETKEAIYEFLNFI--QNRPIVGYYLEFDIAMINKLTKKYLGIKLSNRQIEVSSL 147

Query: 128 SIARR--KHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              ++    P    DL  +S+ K   + I  +  H AL D+ + + +YIK+
Sbjct: 148 YYDKKIGIIPQKNVDLRFDSIMKDLNLPIFKK--HNALNDAIMTALIYIKL 196


>gi|300716497|ref|YP_003741300.1| ribonuclease T [Erwinia billingiae Eb661]
 gi|299062333|emb|CAX59450.1| Ribonuclease T [Erwinia billingiae Eb661]
          Length = 215

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G D+K + ++EI AV L      + + + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFDAKTNALLEIAAVTLKMDENGWLEKDETLHFHVEPFEGSILQP 72

Query: 58  EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        +        +AHNA FD+ F NA 
Sbjct: 73  EALAFNGIDPSNPLRGAVSEYDALHAIFKLVRKGIKDHGCNRAIMVAHNATFDLNFTNAA 132

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             R    ++P  P    DT +++       +  L   C   G+       H AL D+   
Sbjct: 133 ADRAGLKRNPFHPFVTFDTAALSGLVL--GQTVLAKACAAAGMAFDSSQAHSALYDTVQT 190

Query: 168 SDVYIKMMVGGSQIN 182
           +D++ +++    ++ 
Sbjct: 191 ADLFCELVNRWKRLG 205


>gi|320528160|ref|ZP_08029325.1| DNA polymerase III subunit epsilon domain protein [Solobacterium
           moorei F0204]
 gi|320131508|gb|EFW24073.1| DNA polymerase III subunit epsilon domain protein [Solobacterium
           moorei F0204]
          Length = 186

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 82/171 (47%), Gaps = 12/171 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK--NSPEALKLHGI 65
           + +  D ET   +++   +  +G V +++       +   + P       SP  +++HGI
Sbjct: 3   KIVAIDFETA--NNQMASVCSVG-VAVMEDGVIIDHYYSLIKPEENVGYFSPYNIRIHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   +K  P+FS I+SE   +F  ++A  +AHNA+FD+  +        K  +      D
Sbjct: 60  TARDVKGAPTFSEIYSELTGYF--EDAVIVAHNARFDMSCLKQTCLNTGKK-IPVLEYFD 116

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ + +R   +   + LN +C+  GI + H   H AL D++   ++ + +M
Sbjct: 117 TVELCKRVFSNLEHHRLNDVCEYIGIELDH---HNALSDANGCLEIVMAVM 164


>gi|124485750|ref|YP_001030366.1| hypothetical protein Mlab_0928 [Methanocorpusculum labreanum Z]
 gi|124363291|gb|ABN07099.1| Exonuclease, RNase T and DNA polymerase III [Methanocorpusculum
           labreanum Z]
          Length = 228

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 4/175 (2%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGL+ K DRI E+ A++   Y   +   +    PN         ++ GIT E 
Sbjct: 2   LIVDTETTGLNPKIDRITELAAIKFDKYGNKSVMDEYISLPNDICYPENVQEMTGITPEI 61

Query: 70  LKDKP-SFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           L+ K      I   F            + HNA+FD+ FI   L R      +   +IDTL
Sbjct: 62  LELKGHPEEEIAWMFAMMLKSPGRVLLVTHNAQFDLRFIQEMLSRHRYVFPNGWGVIDTL 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++ R + P   + L+     YG+    ++ H A+ D   L  V+  M    + ++
Sbjct: 122 TVFRDRKP-QPHRLSDAISYYGLD-GVKNSHRAIDDVVALCAVFDAMCQEQNDLD 174


>gi|326335188|ref|ZP_08201385.1| exonuclease [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692718|gb|EGD34660.1| exonuclease [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 273

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 82/177 (46%), Gaps = 11/177 (6%)

Query: 2   IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           +  N  R I  FD+ETTG D   DRI+EI  +++  + S+ ++T+   + P        +
Sbjct: 17  MELNLTRPICFFDLETTGTDVSKDRIVEISILKVFPNGSRESKTW--LVNPTI-PIPAAS 73

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI+D+ +   P+F  +  +  +    ++++   +N  +FD+  +  EL R   D  
Sbjct: 74  TDIHGISDKMVAQAPTFKELAKQIHNLI--KDSDLAGYNSDRFDIPLLAEELLRAGVDFD 131

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +R+  T+ +    H   +  L++  K Y    S  + H A  D+    ++    +
Sbjct: 132 LKNRV--TVDVQTIFHKMEQRTLSAAYKFY-CKKSLDNAHSAQADTDATYEILKAQL 185


>gi|118463087|ref|YP_879676.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104]
 gi|118164374|gb|ABK65271.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104]
          Length = 329

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 25/214 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RII +  + L    K  ++    L P      P    +HG+T  
Sbjct: 17  WAVIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPG---VDPGPTHVHGLTAA 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D+P F+ I  +  +    +    +AHN  FD  F+ AE +    + L    ++ T+ 
Sbjct: 74  MLEDQPQFADIAGDVVEVL--RGRTLVAHNVAFDYAFLAAEAELAGIE-LPVDTVMCTVE 130

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +G+  + +  H A  D+ +L+ V    +            
Sbjct: 131 LARRLDLGIDNLRLETLAAYWGV--TQQRPHDAFDDAMVLTGVLASAL------------ 176

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
              +  +E    +P   + +R  P   R+T +EL
Sbjct: 177 ---QRARERDIWLPVHPVTRRRWP-NGRVTHDEL 206


>gi|322835471|ref|YP_004215497.1| exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602]
 gi|321170672|gb|ADW76370.1| Exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602]
          Length = 220

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V++ D    N      + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGLQGG---VVEVASVDIEDGKIVN-PMSDLVRPD-RPISHQAMAIHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    I   +       +  ++AHNA FD   +          P  P   I T+ ++
Sbjct: 59  ADKPWIEEIIPRYH-----GSQYYVAHNASFDQRML----------PDMPGDWICTVKLS 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L K   + +   +    H AL D ++ + + I++M
Sbjct: 104 RRLWPGIKYSNMALYKSLKLDVATPADLHHHRALFDCYITAALLIRIM 151


>gi|220920536|ref|YP_002495837.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
 gi|219945142|gb|ACL55534.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
          Length = 189

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 10/171 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR +  D ET   + + D    +G +  ++  +  R     + P   + SP  +++HGI 
Sbjct: 1   MRTLAIDFETA--NERRDSACAVG-LAWIEDGRVVRREARLIRPAEMRFSPFNVRVHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E + D P F++  + F        A  +AHNA FD+G + A L      P      + T
Sbjct: 58  PEDVADAPDFAAAMAPFLPEIA--GALVLAHNASFDIGVLAAALAACGL-PQPDYTSLCT 114

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           L +ARR+ P   R  L +L  R GI   H   H A  D+ + ++V +  M 
Sbjct: 115 LQLARRQWPGQERYRLPALAARLGIAFRH---HDAGEDAFVCAEVALAAMR 162


>gi|256848055|ref|ZP_05553499.1| exonuclease RNase T and DNA polymerase III [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715115|gb|EEU30092.1| exonuclease RNase T and DNA polymerase III [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 178

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     K      +    + D    +  F   + P     +   +++HGI 
Sbjct: 1   MNFIAMDFETA--SPKRYSACSLSLAIVRDNQIVDE-FYSLINPQT-PFNWRNIQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + + P F  ++     F+   +   IAHNA FD   +   L+     P    + +DT
Sbjct: 57  ERDVANAPIFPEVWKHIAPFYTP-DKLVIAHNATFDNSVLKNTLEHYKITP-PAYQTLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L  +++  P    + LN++     I ++H   H AL D+   +D+ I
Sbjct: 115 LRTSQKLLPRLPNHKLNTVADALKIELNHH--HNALDDAQACADILI 159


>gi|227432020|ref|ZP_03914039.1| DNA-directed DNA polymerase III [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352218|gb|EEJ42425.1| DNA-directed DNA polymerase III [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 177

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + +    + I  V + D    ++ F   + P    +S     +HG+ 
Sbjct: 1   MNFVAMDFETA--NREKHSAVSIALVIVRDNQVVDK-FYSLIKPETTFSSYN-TAIHGLH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P F  ++     FF  +N   +AHNA FD   +   LQ  + D      ++DT
Sbjct: 57  RQDVADAPKFPEVWQTISPFF-TENKLVVAHNASFDNSILKGTLQYYDIDE-PHYLLLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  +R+  P+   + LN++    GIT+ H   H AL D+   +++ I
Sbjct: 115 VQTSRKLFPNFENHKLNTVAGNLGITLDHH--HNALDDAVAAANILI 159


>gi|312110613|ref|YP_003988929.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y4.1MC1]
 gi|311215714|gb|ADP74318.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y4.1MC1]
          Length = 245

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 18/202 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +  +++  ++ D+ETTG   +  D I+ + A + +       T+   +CP  +   P   
Sbjct: 57  MSLDEVTFMIIDMETTGFSPQHGDEILAMAAAKTV-RGAVKETYYTLVCPE-KAIPPHIS 114

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GIT + ++  P        F  F +      I ++   D+ F+N  L    +     
Sbjct: 115 ALTGITAKDVQYAPRLHEAMRSFLSFIS--GGVMIGYHIGHDLSFLNHFLWTHYRTKWA- 171

Query: 121 SRIIDTLSIA----RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +R  D   IA    RR  P     L+     YGI+   R  H A  D   +++++ +++ 
Sbjct: 172 ARFFDMQPIAEMVQRRWFP----TLDDALGHYGISCERR--HTADGDVWAMAELWAQLLA 225

Query: 177 GGSQINFGFKTNEDRFFKEEKK 198
              + N   +T  D +    K+
Sbjct: 226 ELKRNN--IETLYDLYSALGKR 245


>gi|262045749|ref|ZP_06018713.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
 gi|260573708|gb|EEX30264.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
          Length = 177

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHYPESA--CSLALVMVRNNKIVDR-FYTVINPQ-MPFDARNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K+ P+ + ++    +   +      AHNA+FD   +   L R   +      +IDT
Sbjct: 57  AEDVKNAPTMAEVWPHIKE-LYQPGMLVAAHNARFDTNVMRQSLARYGIEE-PHYLVIDT 114

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L+ ++   P    + L+++ +   + + H   H AL DS   + + IK
Sbjct: 115 LASSKLLEPELPDHKLDTVSEALSVELWHH--HNALSDSEACAGILIK 160


>gi|260202912|ref|ZP_05770403.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis K85]
 gi|289572362|ref|ZP_06452589.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           K85]
 gi|289536793|gb|EFD41371.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           K85]
          Length = 329

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 9/181 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET G      RII +  + L    +  ++    L P   K  P    +HG+T  
Sbjct: 16  WAVIDVETLGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAA 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D+P F+ I  E  D    +    +AHN  FD  F+ AE +   +  L    ++ T+ 
Sbjct: 73  MLDDQPQFADIAGEVVDVL--RGRTLVAHNVAFDYAFLAAEAEIA-EAELPVDFVMCTVE 129

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +G+    +  H A  D+ +L+ +    +    +++     
Sbjct: 130 LARRLQLGVDNLRLETLAAHWGVP--QQRPHDAFDDARVLTGILAAALESARELDVWLPV 187

Query: 188 N 188
           +
Sbjct: 188 H 188


>gi|257439307|ref|ZP_05615062.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
           A2-165]
 gi|257198182|gb|EEU96466.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
           A2-165]
          Length = 244

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 14/176 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLC-PNGRKNSPEALKLHG 64
           + FD ETTGL++++ +IIE+ A+ +    +       +  VF+  P G +   + ++L G
Sbjct: 15  VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQKIVELTG 74

Query: 65  ITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           ITDE L+ +  + +   + F +  +      +AHNA+FD+ F    L+R      +  + 
Sbjct: 75  ITDEQLENEGITEAEAAARFTELISGGRVLLVAHNAQFDLLFTAEMLRRHGNGGPEALKA 134

Query: 124 ID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            D     T+   RR +P   + L +    Y +    ++ H A+ D   L +V   M
Sbjct: 135 ADYLDSLTVYKDRRAYP---HKLANAILTYKLEGKVQNSHRAIDDVAALFEVCKAM 187


>gi|21230975|ref|NP_636892.1| ribonuclease T [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66769021|ref|YP_243783.1| ribonuclease T [Xanthomonas campestris pv. campestris str. 8004]
 gi|188992135|ref|YP_001904145.1| ribonuclease T [Xanthomonas campestris pv. campestris str. B100]
 gi|24638163|sp|Q8PAG3|RNT_XANCP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|81305015|sp|Q4UT60|RNT_XANC8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|21112595|gb|AAM40816.1| ribonuclease T [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574353|gb|AAY49763.1| ribonuclease T [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733895|emb|CAP52101.1| Ribonuclease T [Xanthomonas campestris pv. campestris]
          Length = 216

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 81/181 (44%), Gaps = 17/181 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G D     ++EI  V +   ++       T    L P  G +  P++L++ 
Sbjct: 27  PVVVDVETGGFDWNKHALLEIACVPIEMDAQGHFFPGETASAHLVPAPGLEIDPKSLEIT 86

Query: 64  GITDEF-----LKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +       ++K +   +F+           Q A  + HNA FD+ F+NA + R+  
Sbjct: 87  GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 146

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ K
Sbjct: 147 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNSADAHSAVYDTEQTARLFCK 204

Query: 174 M 174
           +
Sbjct: 205 I 205


>gi|222151870|ref|YP_002561030.1| hypothetical protein MCCL_1627 [Macrococcus caseolyticus JCSC5402]
 gi|222120999|dbj|BAH18334.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 297

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 84/211 (39%), Gaps = 9/211 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D ET   ++ +  I  +G V+++D   T  TF   + P     +   + +H I  E
Sbjct: 4   FIALDFETANHNAAS--ICSVGMVKVIDNMMT-ETFYTLVNPET-NFNTSNINVHNIKPE 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+F +++     F    +   + H A+FD+  ++A ++R + + +       +  
Sbjct: 60  DVTAAPTFETVYPHMLSFIG--DLPVVCHFAQFDMKVLHASIKRYHFE-MPTLPYFCSCI 116

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +AR    +    L ++   Y +       H AL D+   + + ++++     +N      
Sbjct: 117 MARDTVTNHSYSLKNMMTYYNLEF--HGHHHALNDAKACAMITVRLLKNYESLNQYLTYK 174

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
             + +          + + R +    RIT +
Sbjct: 175 RRKKYISSVSLKSKRAQMARYQTDLNRITPD 205


>gi|187478996|ref|YP_787020.1| exonuclease [Bordetella avium 197N]
 gi|115423582|emb|CAJ50118.1| putative exonuclease [Bordetella avium 197N]
          Length = 193

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 65/157 (41%), Gaps = 10/157 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGL +    I+E  AV +    +    +   +  NGR       +L GI+ +
Sbjct: 28  FVVADLETTGLSAHACEILEFAAVRVDTEGQIASEYSQLVRINGR-VPSFIARLTGISQQ 86

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            + +D       F  F DF     A    HNA FD  F+ A   R  +     +    TL
Sbjct: 87  EVIRDGKPIDEAFRAFCDFVGT--APVFFHNASFDTRFLRATASRCGQAF--DNDTHCTL 142

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLD 163
            +ARR  P  R + L  L +  G   +    H AL D
Sbjct: 143 LLARRAWPELRSHKLGMLAEHLG---AATPTHRALAD 176


>gi|227877650|ref|ZP_03995697.1| DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256850746|ref|ZP_05556169.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|227862746|gb|EEJ70218.1| DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256712459|gb|EEU27457.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
          Length = 318

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGITD 67
             + DIETTGL    DRI E+G V++ +    ++ +   +  +          KL+GIT+
Sbjct: 33  YTMLDIETTGLYPYRDRITELGGVKVRNGQIVDQ-YTNLVKFSKNNSVPAFITKLNGITE 91

Query: 68  EF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +K+         EF +F  +     I +N  FD+ F+    Q+     LD +  +D 
Sbjct: 92  AQIVKEGIPAEQAIREFREFIGDD--VIIGYNVNFDLNFLYDLSQKYGLPVLD-NDYVDV 148

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           L +AR  +P  R++ L    +R GI  +    H  L DS     VY
Sbjct: 149 LRLARTYYPRERHNRLLDCMQRAGI--AQVEAHHGLQDSLDTIKVY 192


>gi|300773554|ref|ZP_07083423.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300759725|gb|EFK56552.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 316

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 84/207 (40%), Gaps = 13/207 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K K     FD+ETTG++   DRI+EI  ++++            + P G     E+ 
Sbjct: 1   MELKLKRPLAFFDLETTGVNIPLDRIVEISILKVMPDGN-KEVLTRRINP-GMPIPAESS 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLD 119
             HGI DE +KD PSF  +  E  DF    +A+   +N+  FDV  +  E  R N D   
Sbjct: 59  MFHGIYDEDVKDLPSFKELGQEIADFIG--DADLAGYNSNKFDVPMLMEEFLRANVDFSL 116

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             R    + +    H   +  L +  K Y       + H A  D     +V    +    
Sbjct: 117 EGRNF--VDVQNIFHQMEQRTLKAAYKFY-CDQDLNNAHTAEADVTATYEVLKAQLSRYE 173

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLL 206
            + +     ED+   + K  V +++ L
Sbjct: 174 DVLY-----EDKHGNKSKPVVNDVAAL 195


>gi|116493923|ref|YP_805657.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Lactobacillus casei ATCC 334]
 gi|116104073|gb|ABJ69215.1| 3'-5' exonuclease and CRISPR-associated protein cas2 [Lactobacillus
           casei ATCC 334]
          Length = 301

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 13/174 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALKLHGIT 66
            +  DIETTGLD++ D II IGAV+       N T  F   + P  R       KL G++
Sbjct: 130 FVALDIETTGLDAERDAIIAIGAVK---GPSVNETEKFTTLVNP-RRPLPSTVAKLTGLS 185

Query: 67  -DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +E + +  S S       DF        + +N +FD+GF++A  +         ++  D
Sbjct: 186 AEELVANGISLSEAVQALRDFTGS--LPLVGYNLRFDMGFLSAAGRETGLTSFG-NQTFD 242

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            L + ++         L+++   Y I       H AL D+     +  K++  G
Sbjct: 243 LLPLVKKSSRFLDNYKLSTVLAHYQIDNE--QPHHALSDATATMALADKLIKKG 294


>gi|238762297|ref|ZP_04623269.1| Exodeoxyribonuclease 10 [Yersinia kristensenii ATCC 33638]
 gi|238699644|gb|EEP92389.1| Exodeoxyribonuclease 10 [Yersinia kristensenii ATCC 33638]
          Length = 219

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 23/173 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET G       I+EI +V++++    N      + P+ R  S +A+ +H IT
Sbjct: 1   MCFRVIDTETCGF---EGGIVEIASVDVVNGVVIN-PMSDLVSPD-RPISLDAMIIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++ KP  +    ++     + +  ++AHNA FD G +          P    + I T
Sbjct: 56  EEMVEGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICT 100

Query: 127 LSIARRKHPSSRNDLNSL--CKRYGITISHR-SKHGALLDSHLLSDVYIKMMV 176
           L +AR  +P  ++    L    R  +++      H AL D ++ + +  ++M 
Sbjct: 101 LKLARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIMR 153


>gi|227514420|ref|ZP_03944469.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC
           14931]
 gi|227087286|gb|EEI22598.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC
           14931]
          Length = 189

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 9/165 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D ET      +   + I  V     S+    F   + P          ++HGI + 
Sbjct: 13  FIAMDFETASAKRFSACSLAITIVR---NSQIQDEFYTLINPQT-PFFWRNTQVHGIHER 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P+F  ++    +FF   +   IAHNA FD   +   L     +P    + +DTL 
Sbjct: 69  DVKDAPTFPEVWEHIQEFFTP-DKLVIAHNATFDNSVLKNTLLHFEIEP-PVYQTLDTLK 126

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +R+  P    + LN++C +  I + H   H AL D+H  +++ +
Sbjct: 127 TSRQLFPAFPNHKLNTICDQLNIDLHHH--HNALDDAHACANILL 169


>gi|260598318|ref|YP_003210889.1| exodeoxyribonuclease X [Cronobacter turicensis z3032]
 gi|260217495|emb|CBA31655.1| Exodeoxyribonuclease 10 [Cronobacter turicensis z3032]
          Length = 220

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      ++E+ +V+++D +  N      + P+ R  S +A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---VVEVASVDIIDGAIVN-PMSDLVRPD-RPISHQAMAIHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   +       +  ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPYIEDVIPRYH-----GSPWYVAHNASFDRKVL----------PEMPGEWICTVKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175
           RR  P  R     L K   + +   +    H AL D ++ + + +++M
Sbjct: 104 RRLWPGIRYSNMGLYKSLKLQVETPAGLHHHRALFDCYITAALLLEIM 151


>gi|288803395|ref|ZP_06408828.1| exonuclease [Prevotella melaninogenica D18]
 gi|288334215|gb|EFC72657.1| exonuclease [Prevotella melaninogenica D18]
          Length = 284

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 15/210 (7%)

Query: 2   IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  +  IVFD+ETTGLD  NDRII+I  +++    K  R   +F+ P  +    E  
Sbjct: 1   MKLNLTKPLIVFDLETTGLDLVNDRIIQISFIKVHPDGKEERE-NIFINPE-KPIPAEVT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
            L GI+D  + D P+F     +  D       ++  +N  +FDV  +  E  R   D   
Sbjct: 59  LLTGISDADVADAPTFKQKAKDLSD--KFAGCDFAGYNSNRFDVPMLAEEFLRAGVDFDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYIKMMV 176
              R+ID  +I    H   R +L +  K Y G  +      H A  D+     V    + 
Sbjct: 117 SKCRLIDAQNI---YHKMERRNLAAAYKFYCGRKMEDDFEAHKADQDTEATWRVLQGELD 173

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
             +  N   +  EDR    +   +   S +
Sbjct: 174 MYAPGN---QEEEDRVLNNDMDELAEFSRM 200


>gi|330995701|ref|ZP_08319599.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
 gi|329574760|gb|EGG56321.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
          Length = 256

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 12/169 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTG++  NDRI+E+  +++        +  + + P        +  +HGI DE 
Sbjct: 10  VFFDLETTGINITNDRIVELCYIKVYPNGN-EESKSMRINPEMH-IPESSSAIHGIYDED 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-LDPSRIIDTL 127
           + D P+F  +  +  +    +  ++   N  +FDV  +  E  R   D  +   + ID  
Sbjct: 68  VADCPTFKQVAKDLANTI--KGCDFAGFNSNRFDVPMLVEEFLRAGIDIDIRKRKFIDVQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMM 175
           +I  +     R  L++  K Y G  + +   H AL D+    +V +  +
Sbjct: 126 NIYHKL---ERRTLSAAYKFYCGKDLEN--AHSALADTRATYEVLMAQL 169


>gi|156933577|ref|YP_001437493.1| exodeoxyribonuclease X [Cronobacter sakazakii ATCC BAA-894]
 gi|156531831|gb|ABU76657.1| hypothetical protein ESA_01397 [Cronobacter sakazakii ATCC BAA-894]
          Length = 220

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      ++E+ +V+++D +  N      + P+ R  S +A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---VVEVASVDIIDGAIVN-PMSDLVRPD-RPISHQAMAIHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +   +       +  ++AHNA FD   +          P  P   I T+ +A
Sbjct: 59  ADKPYIEEVIPRYH-----GSQWYVAHNASFDRKVL----------PEMPGEWICTVKLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175
           RR  P  R     L K   + +        H AL D ++ + + +++M
Sbjct: 104 RRLWPGIRYSNMGLYKSLKLQVETPEGLHHHRALFDCYITAALLLEIM 151


>gi|238758483|ref|ZP_04619660.1| Exodeoxyribonuclease 10 [Yersinia aldovae ATCC 35236]
 gi|238703387|gb|EEP95927.1| Exodeoxyribonuclease 10 [Yersinia aldovae ATCC 35236]
          Length = 187

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 79/172 (45%), Gaps = 23/172 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET GL      I+E+ +++++D    N      + P+ R  S +A+ +H IT
Sbjct: 1   MYFRVIDTETCGL---EGGIVEVASIDVVDG-VLNNPMSDLISPD-RPISIDAMVIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++ KP  +    ++     + +  ++AHNA FD G +          P    + I T
Sbjct: 56  EEMVEGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICT 100

Query: 127 LSIARRKHPSSRNDLNSL--CKRYGITISHR-SKHGALLDSHLLSDVYIKMM 175
           L +AR  +P  ++    L    R  +++      H AL D ++ + +  ++M
Sbjct: 101 LKLARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIM 152


>gi|58337027|ref|YP_193612.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227903590|ref|ZP_04021395.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
 gi|58254344|gb|AAV42581.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227868477|gb|EEJ75898.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
          Length = 177

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHYPESA--CSLALVMVRNNKIVDR-FYTVINPQ-MPFDARNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K+ P+ + ++ +      +      AHN++FD   +   L R N +      +IDT
Sbjct: 57  AEDVKNAPTMAEVWPKI-KGLYQPGMLVAAHNSRFDTNVMRQSLARYNIEE-PHYLVIDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L+ ++   P    + L+++     + + H   H AL DS   + + I
Sbjct: 115 LATSKLFEPELPNHKLDTVSDALNVELWHH--HNALSDSEACAGILI 159


>gi|295133689|ref|YP_003584365.1| exonuclease family protein [Zunongwangia profunda SM-A87]
 gi|294981704|gb|ADF52169.1| exonuclease family protein [Zunongwangia profunda SM-A87]
          Length = 218

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 88/179 (49%), Gaps = 15/179 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
           +   +V D ETTG D + DRI+ IG V++ +       +F+++L     K +P+ +++HG
Sbjct: 34  ETTFVVLDTETTGFDQEKDRILSIGCVKIKNNKLLVADSFEIYLKQE--KFNPDTVEIHG 91

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +      +  S       F  +   +++  +AH+A FD+  INA L+R N  P   +R++
Sbjct: 92  LIKHERFETISEEKAIQLFLKYI--KDSVLVAHHAGFDINMINAALKR-NHLPKLKNRVL 148

Query: 125 DTLSIARRKHPSSR-------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           DT  + R+    S          L+ +   Y I +  R  H A+ D+ + +  ++K++ 
Sbjct: 149 DTGILYRKTRIISNFIDQHKTYSLDEVALAYNIDLKDR--HTAIGDAFITAIAFLKILG 205


>gi|331082129|ref|ZP_08331257.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405724|gb|EGG85254.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 405

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 14/188 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FD+ET   +  NDRI     + L+   +  + +   + P  R        L GI   
Sbjct: 112 YIAFDVETP--NKNNDRI-SYAGILLVCNGEIIKNYSTLINPETR-FDHFNTVLTGIDAS 167

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+F   +    D F +     IAHNA FD+  ++  L       + P + + T +
Sbjct: 168 AVCHAPTFKEYWPSIEDLFKK--YVIIAHNANFDLSVLSKTLLHYGLK-VPPIKYVCTYN 224

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            +R K P   +  L S+ + + I + +   H A  D+ + S ++  +       N+ F  
Sbjct: 225 ESRNKFPQLGKYSLKSMAEYFDIPLENH--HDAKSDAQVCSSIFEAI----KSQNYMFTP 278

Query: 188 NEDRFFKE 195
            E  F +E
Sbjct: 279 KEFEFHEE 286


>gi|288554471|ref|YP_003426406.1| hypothetical protein BpOF4_07280 [Bacillus pseudofirmus OF4]
 gi|288545631|gb|ADC49514.1| hypothetical protein BpOF4_07280 [Bacillus pseudofirmus OF4]
          Length = 245

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 7/170 (4%)

Query: 4   KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61
            + +  IVFD+ET+G    K D I+ IGAV++         +F   +      +S + L 
Sbjct: 54  LHSLSFIVFDLETSGFFPDKGDEILSIGAVKMKGAEVLFEESFYSTVQCKKEPSS-DVLS 112

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L G+T E L+       + ++F++F        +AH+A  +  F++    ++ + P    
Sbjct: 113 LTGLTLEELQSSRPLIEVLNDFYEFVG--GGTLVAHHATHEKRFMSHMTWQLMRMPFAHR 170

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            I  T       H  +   L+  C  Y I I+ R  H AL D+ + ++++
Sbjct: 171 IIDTTFLTRVVAHDENLVTLDECCIYYNIPITTR--HHALYDAKMTAELW 218


>gi|269966452|ref|ZP_06180536.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
 gi|269828909|gb|EEZ83159.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
          Length = 248

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 27/198 (13%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++  +  D ETTGL+S+ D I+ IG V   +D  + N +    + PN R+ + E++ +HG
Sbjct: 55  QVPFVSVDFETTGLNSEEDVILTIGLVPFTIDRVQCNGSAHWVVNPN-RELNHESVIIHG 113

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD  +K+ P  S I  E  D  + +    + H    +  F N  L     + +    ++
Sbjct: 114 ITDSEVKNAPQLSQILGEILDALSGK-VVLV-HYKNIERQFFNNALLNSIGEGI-QFPVV 170

Query: 125 DTL----SIARRKHPS----------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           DTL    +I RR+                 L    +RYG+       H AL D+   +++
Sbjct: 171 DTLDIEYAIQRRECRGFINKLKGKKPGSVRLGYARERYGLP--AYQPHHALTDALATAEL 228

Query: 171 YIKMMVGGSQINFGFKTN 188
           +       +Q+ + F  N
Sbjct: 229 F------QAQLQYHFNRN 240


>gi|295425904|ref|ZP_06818582.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064402|gb|EFG55332.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           amylolyticus DSM 11664]
          Length = 177

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHYPESA--CSLALVMVRNNEIVDR-FYTVINPQ-MPFDARNIEVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + ++D P+ + ++ +  D   +      AHNA+FD   +   L R +        +IDT
Sbjct: 57  ADDVRDAPTMAEVWPKIKD-LYQPGMLVAAHNARFDTNVMRQSLARYSISE-PHYLVIDT 114

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L+ ++   P    + L+++ +   + + H   H AL DS   +++ I
Sbjct: 115 LATSKLLEPDLPDHKLDTVSEALNVNLWHH--HNALSDSEACAEILI 159


>gi|163787973|ref|ZP_02182419.1| DNA Pol III Epsilon Chain [Flavobacteriales bacterium ALC-1]
 gi|159876293|gb|EDP70351.1| DNA Pol III Epsilon Chain [Flavobacteriales bacterium ALC-1]
          Length = 258

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 7/181 (3%)

Query: 2   IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  + I  FD+ETTG++   DRI+EI  +++    K N     ++         E  
Sbjct: 1   MQLNLTKPICFFDLETTGINISKDRIVEISILKVHPNGKENTK--TWVVNPEMPIPAEVT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI+D  + DKP+F  +  E ++   + +      N +FD+  +  E+ R + D    
Sbjct: 59  AIHGISDADVADKPTFKELSKEIYNLIKDSDLGGFNSN-RFDIPLLAEEMLRADIDF--D 115

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            + + ++ +    H   +  L++  K Y    +    H A  D+    +V    +     
Sbjct: 116 MKGMQSIDVQTIFHKMEQRTLSAAYKFY-CDKNLDDAHSAEADTKATYEVLKAQLSKYED 174

Query: 181 I 181
           +
Sbjct: 175 L 175


>gi|120608729|ref|YP_968407.1| DNA-directed DNA polymerase [Acidovorax citrulli AAC00-1]
 gi|120587193|gb|ABM30633.1| DNA-directed DNA polymerase [Acidovorax citrulli AAC00-1]
          Length = 221

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 9/154 (5%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R  V D ETTG+   +  R  E+  V + +    +R FQ  +   G    P  ++L GIT
Sbjct: 4   RIAVIDFETTGMTPSQGARATEVAIVLMEEGRPVDR-FQSLMR-TGAWLPPFIIQLTGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L   P   S+  E   F    +A  +AHNA FD  F  AEL R   D   P     T
Sbjct: 62  PAMLDTAPPAESVMREAARFVG--DAPMVAHNASFDSRFWAAELARA--DLPAPHAFACT 117

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHG 159
           + ++RR +P  + + L  +    G+  + R  H 
Sbjct: 118 VLLSRRLYPEAASHQLGRIVAHLGLPPAAR-AHR 150


>gi|291617739|ref|YP_003520481.1| ExoX [Pantoea ananatis LMG 20103]
 gi|291152769|gb|ADD77353.1| ExoX [Pantoea ananatis LMG 20103]
          Length = 223

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 85/229 (37%), Gaps = 26/229 (11%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET GL      ++E+ +V+++D    N      + P+ R  S +A+ +H I+
Sbjct: 1   MMLRVIDTETCGLQGG---VVEVASVDVIDGQIVN-PMSDLVSPD-RPISRQAMAVHRIS 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +  +  KP                 + + +AHNA FD   +          P      I 
Sbjct: 56  EAMVMGKPPIEEAI------LRYHGSPFYVAHNASFDRRML----------PEMHGEWIC 99

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITIS---HRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           T+++AR+  P  +    +L     + ++       H AL D ++ + + I++M   S   
Sbjct: 100 TMTLARQLWPGIKYGNQALRHSLKLDVTPPADLHAHRALYDCYVTAALLIRIME-LSGWR 158

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
               +   +   +    +P      +   +  R     L      ++ L
Sbjct: 159 ADEMSLRSQPAAQRDDVLPFGKYRGQALAVVARKDPGYLKWMLDNVKDL 207


>gi|108759005|ref|YP_633932.1| exonuclease [Myxococcus xanthus DK 1622]
 gi|108462885|gb|ABF88070.1| exonuclease [Myxococcus xanthus DK 1622]
          Length = 988

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 13/194 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D+ETTGLD + D +IE+G +   +  +  R  +++     R       +L G+TD
Sbjct: 10  RHVFLDLETTGLDPRVDEVIELGCIFFENGREVERFARLYSA--SRPLPLTIRRLTGLTD 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L+  P F +  +E  +         +AHNA F+ GF+   L  I       + ++D+ 
Sbjct: 68  ADLEGHPRFGTDIAELRE--KLSGWTVVAHNAPFEKGFLPDLLGPI------HAPVLDSC 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            +    HP    + L SL +  G+ +  R  H A+ D   +  V +  M    +   G  
Sbjct: 120 ELMHYLHPELPSHSLESLLRWGGLAL--RQPHRAVSDCEAVYSVLVHAMERCVREGRGDD 177

Query: 187 TNEDRFFKEEKKTV 200
             +     + +K  
Sbjct: 178 VVDLLAALDPRKGA 191


>gi|256844192|ref|ZP_05549679.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|256614097|gb|EEU19299.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
          Length = 318

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGITD 67
             + DIETTGL    DRI E+G V++ +    ++ +   +  +          KL+GIT+
Sbjct: 33  YTMLDIETTGLYPYRDRITELGGVKVRNGQIVDQ-YTNLVKFSKNNSVPAFITKLNGITE 91

Query: 68  EF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +K+         EF +F  +     I +N  FD+ F+    Q+     LD +  +D 
Sbjct: 92  AQIVKEGIPAEQAIREFREFIGDD--VIIGYNVNFDLNFLYDLSQKYGLPVLD-NDYVDV 148

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           L +AR  +P  R++ L    +R GI  +    H  L DS     VY
Sbjct: 149 LRLARTYYPRERHNRLLDCMQRAGI--AQVEAHHGLQDSLDTIKVY 192


>gi|215405762|ref|ZP_03417943.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           02_1987]
 gi|215413638|ref|ZP_03422306.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           94_M4241A]
 gi|215448050|ref|ZP_03434802.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85]
 gi|289747550|ref|ZP_06506928.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           02_1987]
 gi|289759871|ref|ZP_06519249.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85]
 gi|294995379|ref|ZP_06801070.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 210]
 gi|298527188|ref|ZP_07014597.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis 94_M4241A]
 gi|289688078|gb|EFD55566.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           02_1987]
 gi|289715435|gb|EFD79447.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85]
 gi|298496982|gb|EFI32276.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis 94_M4241A]
 gi|326905550|gb|EGE52483.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           W-148]
          Length = 329

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 86/214 (40%), Gaps = 25/214 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T  
Sbjct: 16  WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAA 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D+P F+ I  E  D    +    +AHN  FD  F+ AE +   +  L    ++ T+ 
Sbjct: 73  MLDDQPQFADIAGEVVDVL--RGRTLVAHNVAFDYAFLAAEAEIA-EAELPVDFVMCTVE 129

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +G+    +  H A  D  +L+ +    +    +++     
Sbjct: 130 LARRLQLGVDNLRLETLAAHWGVP--QQRPHDAFDDVRVLTGILAAALESARELDVWL-- 185

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
                        P   + +R  P   R+T +EL
Sbjct: 186 -------------PVHPVTRRRWP-NGRVTHDEL 205


>gi|322822112|gb|EFZ28257.1| exonuclease, putative [Trypanosoma cruzi]
          Length = 271

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 49/218 (22%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELL-------DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  I  D+ETTG  ++ D I+ IGAVEL         +    R+F   + P+ + +S +A
Sbjct: 49  MSAICVDLETTGFSAQCDDIVSIGAVELRWDGTTLQQWVLGARSFFRTVRPS-KPSSHQA 107

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFF-------------------------------- 87
             +HG++ E L+D P    + S+F  F                                 
Sbjct: 108 EAVHGLSFEMLRDAPPLEDVISDFAAFLIQLDDNLAQSGQTEENYCAKPGDLSAKKRCTA 167

Query: 88  -NEQNAEW-----IAHNAKFDVGFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRN 139
                        IAHNA FD  F+   +          + + +  T S+ R  +     
Sbjct: 168 ATTAGCVLTLPPVIAHNANFDASFLQRAVSGAGWRVVWDEYAPLTCTQSMFRALYSHQAA 227

Query: 140 DLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKMMV 176
           DL+  C+  G+  S R  +H AL D+ L   +++++  
Sbjct: 228 DLSRACQFCGVDTSGRDERHDALHDAQLCGRLFLRLTE 265


>gi|212551002|ref|YP_002309319.1| DNA polymerase III epsilon subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549240|dbj|BAG83908.1| DNA polymerase III epsilon subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 258

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 15/219 (6%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           ++ N  R IVF D+ETTG +  +DRI+EI  ++++ +  K  +T    + P       EA
Sbjct: 1   MKLNLKRPIVFFDLETTGTNIISDRIVEISYLKVMPNDEKEIKT--RRINPEI-PIPKEA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-P 117
             +HGIT+E +K+   F +I          +  +   +N  +FD+  +  E  R   D  
Sbjct: 58  SDIHGITNEDVKNALPFKAIAKLLASQI--EGCDLAGYNSNRFDIPILAEEFLRAGIDVD 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
               + +D  +I  +K P     L +  K Y       + H A  D+    +V    +  
Sbjct: 116 WTKQKFVDVQTIFHKKEP---RTLLAALKFY-CNRDLENAHSAAEDAKATYEVLKAQLDK 171

Query: 178 GS--QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214
               Q +  F +N   F K+       I   ++ + LF 
Sbjct: 172 YPDLQNDIIFLSNYSSFNKKNVDFAGRIVYNEKKQELFN 210


>gi|315268227|gb|ADT95080.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS678]
          Length = 201

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 17/174 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGL+     ++EI  +E         T    + P       EA  +HGIT+E 
Sbjct: 33  VILDTETTGLEW-GCEVVEISIIEARTGLILMNTLVRPINP----IPAEATAIHGITNEM 87

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P F  I        + +    IA+N+ FD   + +     + +P   +       +
Sbjct: 88  VADAPLFFDIAISVAQILSGR--TVIAYNSAFDKKMLCSSAAYSSGEPPYVNSDFQCAML 145

Query: 130 ARRKHPS---------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           A  ++             + L +  K+ GI +   + H AL D  L  ++ +KM
Sbjct: 146 AYAQYKGDWNHGHGDFKWHSLVNAAKQQGIALEG-TAHRALYDCQLTRELILKM 198


>gi|167462368|ref|ZP_02327457.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 203

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 82/202 (40%), Gaps = 13/202 (6%)

Query: 7   MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           MR+I  VFD+ETTGLD   D+I EI A+      +  R        +G K +PE + L G
Sbjct: 1   MREIYTVFDLETTGLDPTKDQITEIAAIRTDLIREYGRLDIRITKNSGTKLTPEIVNLTG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I++  ++              F +      +AH+A FD+ F+            +P   +
Sbjct: 61  ISESMMRGGVPEPVAIMLLSCFMS--GTIVVAHHAPFDLAFLARYQ-------FEPDSFV 111

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            T ++++         L S+ +R GI ++    H A+ D      V+ +M      +   
Sbjct: 112 CTRALSKLVESDESASLASVAERRGIELTGH--HRAMNDVEATVKVFQQMKAEADALGIK 169

Query: 185 FKTNEDRFFKEEKKTVPNISLL 206
           +        +     +P ++ +
Sbjct: 170 YYNVLINDEERPLTYIPKLAKV 191


>gi|262047863|ref|ZP_06020812.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|312976690|ref|ZP_07788439.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
 gi|260571856|gb|EEX28428.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|310896018|gb|EFQ45083.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
          Length = 318

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGITD 67
             + DIETTGL    DRI E+G V++ +    ++ +   +  +          KL+GIT+
Sbjct: 33  YTMLDIETTGLYPYRDRITELGGVKVRNGQIVDQ-YTNLVKFSKNNSVPAFITKLNGITE 91

Query: 68  EFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           E + K+         EF +F  +     I +N  FD+ F+    Q+     LD +  +D 
Sbjct: 92  EQIGKEGIPAEQAIREFREFIGDD--VIIGYNVNFDLNFLYDLSQKYGLPVLD-NDYVDV 148

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           L +AR  +P  R++ L    +R GI  +    H  L DS     VY
Sbjct: 149 LRLARTYYPRERHNRLLDCMQRAGI--AQVEAHHGLQDSLDTIKVY 192


>gi|255010437|ref|ZP_05282563.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis
           3_1_12]
 gi|313148241|ref|ZP_07810434.1| DNA Pol III epsilon chain [Bacteroides fragilis 3_1_12]
 gi|313137008|gb|EFR54368.1| DNA Pol III epsilon chain [Bacteroides fragilis 3_1_12]
          Length = 257

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 12/178 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +  +DRI+EI  +++  + ++ ++T +  + P       E+
Sbjct: 1   MKLNLKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNEESKTLR--INPE-MPIPAES 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI D  + D P+F  +     +  + +  +    N  +FD+  +  E  R   D  
Sbjct: 58  SAVHGIFDADVADCPTFKEVAKSIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVDID 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMM 175
              R    + +    H   +  L++  K Y G  +     H A  D+    +V +  +
Sbjct: 116 MSKRKF--VDVQVIFHKMEQRTLSAAYKFYCGRNLED--AHTAEADTRATYEVLMAQL 169


>gi|221069684|ref|ZP_03545789.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
 gi|220714707|gb|EED70075.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
          Length = 213

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 9/153 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTG+   +  R  E+  V L      +R FQ  +   G   SP   +L GIT+
Sbjct: 5   IAVIDFETTGMTPAQGARATEVAIVLLEQGRVVDR-FQSLM-QAGAWVSPFITELTGITN 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L+  P  + +  +   F     A  +AHNA FD  F  AEL         P     T+
Sbjct: 63  AMLRTAPPAAEVMRDAARFVG--GAPMVAHNASFDSKFWQAELAL--AGEAAPQLFACTV 118

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHG 159
            ++RR +P    + L +L +   +  + R  H 
Sbjct: 119 LLSRRIYPQAPSHSLGNLARYLHLPSTGR-AHR 150


>gi|90962124|ref|YP_536040.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius UCC118]
 gi|227891147|ref|ZP_04008952.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius ATCC 11741]
 gi|90821318|gb|ABD99957.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius UCC118]
 gi|227867021|gb|EEJ74442.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius ATCC 11741]
          Length = 177

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K      +    + +    ++ F   + P+    S   +++HGIT
Sbjct: 1   MNFVAIDFETA--NPKRYSACSLALTVVKNNQIADQ-FYSLIKPDT-DFSWRNIQVHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ +++ PSF  ++    +FF   N   +AHNA FD   +   L+  +   L   +++DT
Sbjct: 57  EKQVQNAPSFPELWPHIQNFFTPNNL-IVAHNASFDSSVLLRTLEHYDI-TLPHYQLLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L  +++       + L+++C    I + H   H AL DS   +++ +
Sbjct: 115 LRTSKKFFKDFENHKLDTICNNLNIDLKHH--HNALFDSTACAEILL 159


>gi|194468196|ref|ZP_03074182.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri
           100-23]
 gi|194453049|gb|EDX41947.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri
           100-23]
          Length = 178

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 73/167 (43%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      +    + +  +    F   + P+ +       ++HGI 
Sbjct: 1   MNFIAMDFETA--NGKRYSACSLALTIVRNG-QIADEFYTLINPHTKFF-WRNTQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +++ P F  ++     F+   +   IAHN +FD   +   L+  N + +   + +DT
Sbjct: 57  ERDVQNAPDFPEVWEHINQFYTP-DKLVIAHNNRFDNSVLRNTLEHYNIE-VPAYQTLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           ++ +R+  P  +   LN++C    I + H   H AL D+   +++ +
Sbjct: 115 VASSRQLIPGLTNYKLNTVCDALNIDLHHH--HNALDDAQACANILL 159


>gi|301301275|ref|ZP_07207430.1| exonuclease [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851151|gb|EFK78880.1| exonuclease [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 177

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K      +    + +    ++ F   + P+    S   +++HGIT
Sbjct: 1   MNFVAIDFETA--NPKRYSACSLALTVVKNNQIADQ-FYSLIKPDT-DFSWRNIQVHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ +++ PSF  ++    +FF   N   +AHNA FD   +   L+  +   L   +++DT
Sbjct: 57  EKQVQNAPSFPELWPHIQNFFTPNNL-IVAHNASFDSSVLLRTLEHYDI-TLPHYQLLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L  +++       + L+++C    I + H   H AL DS   +++ +
Sbjct: 115 LRTSKKFFKDLENHKLDTICNNLNIDLKHH--HNALFDSTACAEILL 159


>gi|282859398|ref|ZP_06268505.1| exonuclease [Prevotella bivia JCVIHMP010]
 gi|282587832|gb|EFB93030.1| exonuclease [Prevotella bivia JCVIHMP010]
          Length = 287

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 12/176 (6%)

Query: 2   IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  R  I+FD+ETTGLD  NDRII+I  ++     +  R   +F+ P  ++   E +
Sbjct: 1   MKLNLTRPLIIFDLETTGLDLVNDRIIQISYIKAYPDGREERE-NIFINPE-KQIPEEVI 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
            L GIT+  + + P+F     E          ++   N  +FDV  +  E  R   +   
Sbjct: 59  ALTGITNADVAEAPTFKEKGKELAQ--KFAGCDFAGFNSNRFDVPMLAEEFLRAGVEFDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYI 172
              ++ID  +I    H   R +L +  + Y G  +      H A  D+     V  
Sbjct: 117 SKCKLIDAQNI---FHKMERRNLAAAYEFYCGRKMEDDFEAHRADQDTEATWAVLQ 169


>gi|255037648|ref|YP_003088269.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
           18053]
 gi|254950404|gb|ACT95104.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
           18053]
          Length = 269

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 12/170 (7%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K     FD+ETTG++   DRI+EI  V+  ++     RT    + P       E+  +HG
Sbjct: 7   KKPIAFFDLETTGVNIVRDRIVEISVVKALVNGETEIRT--RRINPE-MPIPLESSLIHG 63

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRI 123
           I DE +KD P+F S+      F   +  +    N  +FD+  +  E  R+  D    +R 
Sbjct: 64  IYDEDVKDAPTFKSVAKNLASFL--EGCDLAGFNSNRFDIPMLVEEFLRVGVDFDVKNRR 121

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYI 172
           +  + + R  H     +L++  K Y G T+++   H A  D+    +V  
Sbjct: 122 M--VDVQRIYHMMEPRNLSAAYKFYCGKTLNN--AHSAEADTIATFEVLQ 167


>gi|148543638|ref|YP_001271008.1| exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri
           DSM 20016]
 gi|184153052|ref|YP_001841393.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112]
 gi|227363391|ref|ZP_03847517.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3]
 gi|227545077|ref|ZP_03975126.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A]
 gi|300909253|ref|ZP_07126714.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
 gi|325682001|ref|ZP_08161519.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM4-1A]
 gi|148530672|gb|ABQ82671.1| Exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri
           DSM 20016]
 gi|183224396|dbj|BAG24913.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112]
 gi|227071580|gb|EEI09877.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3]
 gi|227184926|gb|EEI64997.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A]
 gi|300893118|gb|EFK86477.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
 gi|324978645|gb|EGC15594.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM4-1A]
          Length = 179

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 73/167 (43%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      +    + +  +    F   + P+ +       ++HGI 
Sbjct: 2   MNFIAMDFETA--NGKRYSACSLALTIVRNG-QIADEFYTLINPHTKFF-WRNTQIHGIH 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +++ P F  ++     F+   +   IAHN +FD   +   L+  N + +   + +DT
Sbjct: 58  ERDVQNAPDFPEVWEHINQFYTP-DKLVIAHNNRFDNSVLRNTLEHYNIE-VPAYQTLDT 115

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           ++ +R+  P  +   LN++C    I + H   H AL D+   +++ +
Sbjct: 116 VASSRQLIPGLTNYKLNTVCDALNIDLHHH--HNALDDAQACANILL 160


>gi|289207535|ref|YP_003459601.1| ribonuclease T [Thioalkalivibrio sp. K90mix]
 gi|288943166|gb|ADC70865.1| ribonuclease T [Thioalkalivibrio sp. K90mix]
          Length = 228

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 88/213 (41%), Gaps = 21/213 (9%)

Query: 3   RKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRK 54
             N+ R    +V D+ET G D +   ++++ AV L     D+   +RT  + + P  G +
Sbjct: 14  MANRFRGFLPVVVDVETGGFDCRRHALLQVAAVFLRRDENDHLVRDRTVSLHVRPYEGSE 73

Query: 55  NSPEALKLHGITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFI 106
             P++L+++GI     L+            +            + A  + HNA FD+GF+
Sbjct: 74  MDPKSLEVNGIDPYHPLRAAYPEDQAMGRLFSEVRREVKINHCKRAILVGHNAHFDLGFV 133

Query: 107 NAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +   +R    ++P  P   +DT+S+A       +  L       G+     + H A  D+
Sbjct: 134 HTAAERCGIKRNPFHPFSSLDTVSLAALAF--GQTVLARAADAAGLGWDAEAAHSAAFDA 191

Query: 165 HLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEK 197
              +D++ ++     Q   G   N  R    E+
Sbjct: 192 EKTADIFCQI-ANRWQDGVGVPQNALRLPDPEE 223


>gi|325921138|ref|ZP_08183009.1| RNAse T [Xanthomonas gardneri ATCC 19865]
 gi|325548410|gb|EGD19393.1| RNAse T [Xanthomonas gardneri ATCC 19865]
          Length = 213

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 81/181 (44%), Gaps = 17/181 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G D     ++EI  V +   ++       T    L P  G +  P++L++ 
Sbjct: 27  PVVVDVETGGFDWNKHALLEIACVPIEMDAEGRFFPGDTASAHLVPAPGLEIDPKSLEIT 86

Query: 64  GITDEF-----LKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +       ++K +   +F+           Q A  + HNA FD+ F+NA + R+  
Sbjct: 87  GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 146

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ K
Sbjct: 147 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCK 204

Query: 174 M 174
           +
Sbjct: 205 I 205


>gi|156303079|ref|XP_001617467.1| hypothetical protein NEMVEDRAFT_v1g226058 [Nematostella vectensis]
 gi|156193984|gb|EDO25367.1| predicted protein [Nematostella vectensis]
          Length = 256

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 85/192 (44%), Gaps = 10/192 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K       FD+ETTG+D   DRI+EI   ++  + +K ++T+   + P      P+ 
Sbjct: 1   MELKLNRPICFFDLETTGIDVARDRIVEISVFKVFPNGNKESKTW--LVNPTI-PIPPQT 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGITDE + ++P+F+ +    ++    ++++    N  +FD+  +  EL R   D  
Sbjct: 58  TAVHGITDEKVANEPTFNELAPHVYNMI--KDSDLAGFNSDRFDIPLLAEELLRAGVDFD 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +R+  ++ +    H      L++  K Y    S  + H A  D+    ++    +   
Sbjct: 116 MKNRV--SVDVQTIFHKKEERTLSAAYKFY-CNQSLENAHSAEADTMATYEILKAQLDRY 172

Query: 179 SQINFGFKTNED 190
             +    K   +
Sbjct: 173 EDLENDMKLLSE 184


>gi|91223850|ref|ZP_01259114.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|91191342|gb|EAS77607.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
          Length = 248

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 27/198 (13%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++  +  D ETTGL+S+ D I+ IG V   +D  + N +    + PN R+ + E++ +HG
Sbjct: 55  QVPFVSVDFETTGLNSEEDVILTIGLVPFTIDRVQCNGSAHWVVNPN-RELNHESVIIHG 113

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD  +K+ P  S I  E  D  + +    + H    +  F N  L     + +    ++
Sbjct: 114 ITDSEVKNAPQLSQILGEILDALSGK-VVLV-HYKNIERQFFNNALLNSIGEGI-QFPVV 170

Query: 125 DTL----SIARRKHPS----------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           DTL    +I RR+                 L    +RYG+       H AL D+   +++
Sbjct: 171 DTLDIEYAIQRRECRGFINKLKGKKPGSVRLGHARERYGLP--AYQPHHALTDALATAEL 228

Query: 171 YIKMMVGGSQINFGFKTN 188
           +       +Q+ + F  N
Sbjct: 229 F------QAQLQYHFNRN 240


>gi|163755942|ref|ZP_02163059.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1]
 gi|161324113|gb|EDP95445.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1]
          Length = 257

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 104/235 (44%), Gaps = 25/235 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K K     FD+ETTG++   DRI+EI  +++  + +K ++T+   + P       E 
Sbjct: 1   MELKLKNPICFFDLETTGVEVAKDRIVEIAILKVYPNGNKESKTW--LVNPE-MPIPAET 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
            ++HGITD+ + ++P+F  +  E ++    ++++   +N  +FD+  +  EL R + D  
Sbjct: 58  SEIHGITDDKVANEPTFKELSKEIYNMI--KDSDLAGYNSDRFDIPLLAEELLRADIDFD 115

Query: 119 DPSRI-IDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMV 176
             +++ ID  +I    H   +  L++  K Y G  +     HGA  D++   +V    + 
Sbjct: 116 MKNKVSIDVQTI---FHKMEKRTLSAAYKFYCGKELEG--AHGAEADTNATYEVLKSQLD 170

Query: 177 GGSQINFGFKTNEDRFFKE-----------EKKTVPNISLLKRDKPLFTRITKEE 220
              ++    K   +   ++           +K      S  K       ++  EE
Sbjct: 171 RYDELENDVKKLSEFTTRKKTADFAGFIIFDKDGEEIFSFGKHKGKKVAKVLDEE 225


>gi|224541140|ref|ZP_03681679.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525949|gb|EEF95054.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM
           15897]
          Length = 297

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  +FDIE   L++    +  IG V L D  K   TF   + P      P   K+H I  
Sbjct: 4   KITIFDIEE--LNNDPVSVCSIGIVVLED-MKVKETFYSLIRPPKLTFDPYRYKVHKIRP 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + LK +P+F  I+ +   +F  +N+  I+H+ + D+  + A  +R  +       +  TL
Sbjct: 61  QDLKKQPTFPEIWPKISKYF--ENSIVISHDIQSDLNHLLAVFRRF-RIRKPTCYLSCTL 117

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +A+  HP   +  L SLC  Y + + +   H AL DS   +++  KMM 
Sbjct: 118 VLAKLFHPELQKYGLGSLCDFYSVDLEN--AHNALADSLACAELLKKMME 165


>gi|323343969|ref|ZP_08084196.1| exonuclease [Prevotella oralis ATCC 33269]
 gi|323095788|gb|EFZ38362.1| exonuclease [Prevotella oralis ATCC 33269]
          Length = 165

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 11/170 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   ++    +  +G V + D   T+  +   +CP     +     +HG+T E
Sbjct: 4   FAAIDFETA--NAARTSVCSVGMVIVEDGEITDSYYH-LICPLPNYYTLWTTAVHGLTFE 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P+F  +++E            +AHN  FD   + A  +       D  +   TL 
Sbjct: 61  DTAGAPTFPDVWAEIAPKIRY--LPLVAHNKAFDESCLKAVFKAYGMQYPD-YKFYCTLL 117

Query: 129 IARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ARR           L ++ +  G ++SH   H AL D+   + + +K++
Sbjct: 118 GARRTFRKGMLPNYQLQTVAQYCGYSLSHH--HHALADAEACAHIALKIL 165


>gi|312875182|ref|ZP_07735195.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           2053A-b]
 gi|311089289|gb|EFQ47720.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           2053A-b]
          Length = 299

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 12/167 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  N    ++ D+ETTGLD  N+ IIEIGA+++         +   +  N     P A+K
Sbjct: 124 IDTNTKPYVIIDLETTGLDYINNNIIEIGAIKIAKN---IEEYSCIVKQNITL--PNAIK 178

Query: 62  L-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +  GI+D  LK+    S    E   F  ++    + +N  FD+ FIN  L+R  +  L  
Sbjct: 179 ILTGISDAELKNGKDESVAIKELCTFIGDK--ALVGYNVNFDIRFINEALKRNGQSQL-T 235

Query: 121 SRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           +++ D +    R K       L+++   YGI I  +  H A+ D  +
Sbjct: 236 NKVYDVMKYVKRDKMFLKNYKLDTVLSEYGINI--KVPHRAIEDVKI 280


>gi|309807670|ref|ZP_07701611.1| putative CRISPR-associated endoribonuclease Cas2 [Lactobacillus
           iners LactinV 01V1-a]
 gi|308169103|gb|EFO71180.1| putative CRISPR-associated endoribonuclease Cas2 [Lactobacillus
           iners LactinV 01V1-a]
          Length = 275

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 12/167 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  N    ++ D+ETTGLD  N+ IIEIGA+++         +   +  N     P A+K
Sbjct: 102 IDTNTKPYVIIDLETTGLDYINNNIIEIGAIKIAKN---IEEYSCIVKQNITL--PNAIK 156

Query: 62  L-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +  GI+D  LK+    S    E   F  ++    + +N  FD+ FIN  L+R  +  L  
Sbjct: 157 ILTGISDAELKNGKDESVAIKELCTFIGDK--ALVGYNVNFDIRFINEALKRNGQSQL-T 213

Query: 121 SRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           +++ D +    R K       L+++   YGI I  +  H A+ D  +
Sbjct: 214 NKVYDVMKYVKRDKMFLKNYKLDTVLSEYGINI--KVPHRAIEDVKI 258


>gi|293395725|ref|ZP_06640007.1| exodeoxyribonuclease X [Serratia odorifera DSM 4582]
 gi|291421662|gb|EFE94909.1| exodeoxyribonuclease X [Serratia odorifera DSM 4582]
          Length = 222

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 87/219 (39%), Gaps = 30/219 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET GLD     I+E+ +++++D    N      +CP+ R    EA+ +H IT
Sbjct: 1   MTLRVIDTETCGLDGG---IVEVASIDIIDGQLAN-PMSDLVCPD-RPIGIEAMAIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  ++ KP  +        +   +   ++AHNA FD G +          P    R I T
Sbjct: 56  EAMVEGKPRIAVAIGR---YMGSE--YYVAHNAAFDRGVL----------PEMNGRWICT 100

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS-----KHGALLDSHLLSDVYIKMMVGGSQI 181
           + +AR  +P  +     L     + +          H AL D ++ + +  +++      
Sbjct: 101 VKLARALYPGIKYGNQYLRYALNLEVQLPQDTTLYPHRALYDCYVTAALLQRIIK----- 155

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           + G+   E     E+   +      K       RI +E+
Sbjct: 156 DSGWSAEEMANITEQPVLLKTFKFGKYRGQPIDRIAQED 194


>gi|329961134|ref|ZP_08299389.1| exonuclease [Bacteroides fluxus YIT 12057]
 gi|328532072|gb|EGF58882.1| exonuclease [Bacteroides fluxus YIT 12057]
          Length = 256

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 12/185 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +  +DRI+EI  +++  + ++ ++T +  + P       E+
Sbjct: 1   MKLNLKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNEESKTMR--INPEMH-IPAES 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI DE + D P+F  +  +  +  + +  +    N  +FD+  +  E  R   D  
Sbjct: 58  SAVHGIYDEDIADCPTFKEVARKIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVDID 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVG 177
              R    + +    H   +  L++  K Y G  +     H A  D+    +V +  +  
Sbjct: 116 MSRRKF--VDVQVIFHKMEQRTLSAAYKFYCGKNLED--AHTAEADTRATYEVLMAQLDR 171

Query: 178 GSQIN 182
             ++ 
Sbjct: 172 YGELQ 176


>gi|300767630|ref|ZP_07077540.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300494615|gb|EFK29773.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 182

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 74/167 (44%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +  +  D ET   ++K D    +    + +   ++  F   + P         +++HGI 
Sbjct: 5   LNFVAMDFETA--NAKRDSACSLALTVVRNNQISDE-FYTLIKPES-DFFWRNVQIHGIH 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + D P F  ++     FF +++   IAHNA FD+G +   L             +DT
Sbjct: 61  EADVADAPKFPDVWQHIAPFF-QRDRLVIAHNAPFDIGVLRNTLAHYGISA-PEYLSMDT 118

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  ++R +P    + L+++C+   I + H   H AL DS   +++ +
Sbjct: 119 VKTSQRFYPELPNHKLDTVCQALDIDLQHH--HNALDDSLACANILL 163


>gi|294626315|ref|ZP_06704917.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294665592|ref|ZP_06730872.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292599316|gb|EFF43451.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292604641|gb|EFF48012.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 213

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G D     ++EI  V +   +        T    L P  G +  P++L++ 
Sbjct: 27  PVVVDVETGGFDWNKHALLEIACVPIEMGADGRFFPGETASAHLVPAPGLEIDPKSLEIT 86

Query: 64  GITDEF-----LKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +       ++K +   +F+           Q A  + HNA FD+ F+NA + R+  
Sbjct: 87  GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 146

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ K
Sbjct: 147 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCK 204

Query: 174 M 174
           +
Sbjct: 205 I 205


>gi|227536554|ref|ZP_03966603.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243631|gb|EEI93646.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 316

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 13/207 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K K     FD+ETTG++   DRI+EI  ++++            + P G     E+ 
Sbjct: 1   MELKLKRPLAFFDLETTGVNIPLDRIVEISILKVMPDGN-KEVLTRRINP-GMPIPAESS 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLD 119
             HGI DE +KD PSF  +  E  DF    +A+   +N+  FDV  +  E  R N D   
Sbjct: 59  MFHGIYDEDVKDLPSFKELGQEIADFIG--DADLAGYNSNKFDVPMLMEEFLRANVDFSL 116

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             R    + +    H   +  L +  K Y       + H A  D     +V    +    
Sbjct: 117 EGRNF--VDVQNIFHQMEQRTLKAAYKFY-CDQDLNNAHTAEADVTATYEVLKAQLSRYE 173

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLL 206
            + +     ED+   + K  V ++  L
Sbjct: 174 DVVY-----EDKHGNKSKPVVNDVEAL 195


>gi|224023901|ref|ZP_03642267.1| hypothetical protein BACCOPRO_00618 [Bacteroides coprophilus DSM
           18228]
 gi|224017123|gb|EEF75135.1| hypothetical protein BACCOPRO_00618 [Bacteroides coprophilus DSM
           18228]
          Length = 163

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 70/168 (41%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   +++   +  +G V + +    + TF   + P     S    ++HG+T E
Sbjct: 4   FAAIDFETA--NNQRSSVCSVGIVVVRNDEIVD-TFYSLINPEPNYYSYWCSQVHGLTRE 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             ++ P F  ++ +     +      +AHN  FD   + A   R+ +         DTL 
Sbjct: 61  DTENAPVFPDVWKQIEPLID--GLPLVAHNRPFDESCLKAVF-RVYQMDYPDYEFYDTLC 117

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R+  P    + L+++    G  + +   H AL D+   + +  +++
Sbjct: 118 VSRKVFPYLPNHQLHTVAAACGYHLENH--HHALADAEACAWIAREIL 163


>gi|152992740|ref|YP_001358461.1| DNA polymerase III subunit epsilon [Sulfurovum sp. NBC37-1]
 gi|151424601|dbj|BAF72104.1| DNA polymerase III, epsilon subunit [Sulfurovum sp. NBC37-1]
          Length = 206

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 7/169 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGLD K D I+ IGAV++ +    T+    +++    ++ S E++ +H I   
Sbjct: 32  VVFDCETTGLDPKKDGIVSIGAVKIKENRILTDEAMHIYVKQE-KQISHESITIHQIRHC 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D         EF  F   +      +  +FDV  IN  ++ +    L   +   +  
Sbjct: 91  DLEDAVPIEEAIEEFLYFIGGR--TLAGYYLEFDVAMINKYIKPMYGITLPNKQEEVSAI 148

Query: 129 IARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +K    P    DL        +++     H AL D+ + + +Y+K+
Sbjct: 149 YYDKKISTIPQGNIDLRFETIIEDLSLPKLQAHDALNDAVMTAMIYLKL 197


>gi|56751271|ref|YP_171972.1| hypothetical protein syc1262_c [Synechococcus elongatus PCC 6301]
 gi|81299062|ref|YP_399270.1| exonuclease [Synechococcus elongatus PCC 7942]
 gi|56686230|dbj|BAD79452.1| unknown protein [Synechococcus elongatus PCC 6301]
 gi|81167943|gb|ABB56283.1| Exonuclease [Synechococcus elongatus PCC 7942]
          Length = 256

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 7/162 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTG      R+IE+G ++              L P G        +  GIT +
Sbjct: 22  FTVVDVETTGFKPPQARVIELGILQATLAEGIQFQQAELLNP-GIPIPEAIAQFTGITTD 80

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127
            +       S+          Q    +AHN  FD  F+ AE Q++  D    P+  + T+
Sbjct: 81  LIATADPPESVLPPLLPRL--QTGILVAHNLPFDYRFLTAEYQQLGLDFERSPTEQLCTV 138

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            ++R+         L  L + +G  +     H A  D     
Sbjct: 139 QMSRQLLADLPSRSLPQLVQHFGFPV--GQSHRAAADVEACW 178


>gi|302345413|ref|YP_003813766.1| exonuclease [Prevotella melaninogenica ATCC 25845]
 gi|302149990|gb|ADK96252.1| exonuclease [Prevotella melaninogenica ATCC 25845]
          Length = 284

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 15/210 (7%)

Query: 2   IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  +  IVFD+ETTGLD  NDRII+I  +++    K  R   +F+ P  +    E  
Sbjct: 1   MKLNLTKPLIVFDLETTGLDLVNDRIIQISFIKVHPDGKEERE-NIFINPE-KPIPAEVT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
            L GI+D  + D P+F     +  D       ++  +N  +FDV  +  E  R   D   
Sbjct: 59  LLTGISDADVADAPTFKQKAKDLSD--KFAGCDFAGYNSNRFDVPMLAEEFLRAGVDFDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYIKMMV 176
              R+ID  +I    H   R +L +  K Y G  +      H A  D+     V    + 
Sbjct: 117 SKCRLIDAQNI---YHKMERRNLAAAYKFYCGRKMEDDFEAHKADQDTEATWCVLQGELD 173

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
             +  N   +  EDR    +   +   S +
Sbjct: 174 MYAPGN---QEEEDRVLNNDMDELAEFSRM 200


>gi|21242321|ref|NP_641903.1| ribonuclease T [Xanthomonas axonopodis pv. citri str. 306]
 gi|24638164|sp|Q8PM62|RNT_XANAC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|21107753|gb|AAM36439.1| ribonuclease T [Xanthomonas axonopodis pv. citri str. 306]
          Length = 213

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G D     ++EI  V +   +        T    L P  G +  P++L++ 
Sbjct: 27  PVVVDVETGGFDWNKHALLEIACVPIEMGADGRFFPGETASAHLVPAPGLEIDPKSLEIT 86

Query: 64  GITDEF-----LKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +       ++K +   +F+           Q A  + HNA FD+ F+NA + R+  
Sbjct: 87  GIVLDHPFRFAKQEKEALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 146

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ K
Sbjct: 147 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCK 204

Query: 174 M 174
           +
Sbjct: 205 I 205


>gi|156743855|ref|YP_001433984.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM
           13941]
 gi|156235183|gb|ABU59966.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM
           13941]
          Length = 232

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 76/186 (40%), Gaps = 19/186 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNG-RKNSPEA 59
           +        V D+ETTGL+ + D ++ IG VE+ +     +R +   + P      +PE+
Sbjct: 28  LPWRAAPYSVMDVETTGLNPRRDALLAIGLVEIDEGRIRMDRRWYTLVHPPDDAPINPES 87

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +++HG+  + ++  P   ++  +       +    + H A  D+GF+   ++R+      
Sbjct: 88  IRIHGLLPQDVEHAPPLDAVVPDVLRRLTGR--VLVVHVADVDIGFLRQAMRRL-YGVDP 144

Query: 120 PSRIIDTLSIARRKHPSSR------------NDLNSLCKRYGITISHRSKHGALLDSHLL 167
               IDT  +A       R              L +L +  G+ +     H A  D+   
Sbjct: 145 RGPAIDTARLAWHFQRHQRLIEGLGSEQEPALQLRALAESLGLPVYPE--HNAFNDALTT 202

Query: 168 SDVYIK 173
           + +++ 
Sbjct: 203 AQLFLA 208


>gi|157866092|ref|XP_001681752.1| mitochondrial DNA polymerase I protein B [Leishmania major strain
           Friedlin]
 gi|68125051|emb|CAJ02395.1| putative mitochondrial DNA polymerase I protein B [Leishmania major
           strain Friedlin]
          Length = 1429

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 74/203 (36%), Gaps = 35/203 (17%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +    R + FDIETTGL+   D I+E+   + ++ S    TF   + P  R  +P  + +
Sbjct: 758 KLKTYRVVFFDIETTGLNPSTDAIVEVAMFDPIENS----TFHTLVNPQ-RPITPRTVGI 812

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNA--------EWIAHN-AKFDVGFINAELQRI 113
           H IT+  ++D P+   +      +     A          + HN    D   +   L+  
Sbjct: 813 HHITNAMVRDAPTVDVVAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPMLRRALECH 872

Query: 114 NKD-PLDPSRIIDTLS-------IARRKHPSSRND------------LNSLCKRYGITIS 153
             +  LD     D+L+         R +  + R +            L+ L     +   
Sbjct: 873 APECQLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALASSLRLSRLITALNVRPE 932

Query: 154 HRSKHGALLDSHLLSDVYIKMMV 176
               H A  D+  L  V I ++ 
Sbjct: 933 G-DLHRADTDTKALWYVLINILG 954


>gi|15610847|ref|NP_218228.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           H37Rv]
 gi|148663576|ref|YP_001285099.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           H37Ra]
 gi|167970866|ref|ZP_02553143.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           H37Ra]
 gi|306778068|ref|ZP_07416405.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu001]
 gi|306974185|ref|ZP_07486846.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu010]
 gi|307081893|ref|ZP_07491063.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu011]
 gi|307086506|ref|ZP_07495619.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu012]
 gi|2960135|emb|CAA18033.1| PROBABLE DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ [Mycobacterium
           tuberculosis H37Rv]
 gi|148507728|gb|ABQ75537.1| DNA polymerase III subunit epsilon DnaQ [Mycobacterium tuberculosis
           H37Ra]
 gi|308213597|gb|EFO72996.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu001]
 gi|308356458|gb|EFP45309.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu010]
 gi|308360405|gb|EFP49256.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu011]
 gi|308364101|gb|EFP52952.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu012]
          Length = 329

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 25/214 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T  
Sbjct: 16  WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAA 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  +P F+ I  E  D    +    +AHN  FD  F+ AE +   +  L    ++ T+ 
Sbjct: 73  MLDGQPQFADIAGEVVDVL--RGRTLVAHNVAFDYAFLAAEAEIA-EAELPVDFVMCTVE 129

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +G+    +  H A  D  +L+ +    +    +++     
Sbjct: 130 LARRLQLGVDNLRLETLAAHWGVP--QQRPHDAFDDVRVLTGILAAALESARELDVWL-- 185

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
                        P   + +R  P   R+T +EL
Sbjct: 186 -------------PVHPVTRRRWP-NGRVTHDEL 205


>gi|254233206|ref|ZP_04926532.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis C]
 gi|124602999|gb|EAY61274.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis C]
          Length = 329

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 25/214 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T  
Sbjct: 16  WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAA 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  +P F+ I  E  D    +    +AHN  FD  F+ AE +   +  L    ++ T+ 
Sbjct: 73  MLDGQPQFADIAGEVVDVL--RGRTLVAHNVAFDYAFLAAEAEIA-EAELPVDFVMCTVE 129

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +G+    +  H A  D  +L+ +    +    +++     
Sbjct: 130 LARRLQLGVDNLRLETLAAHWGVP--QQRPHDAFDDVRVLTGILAAALESARELDVWL-- 185

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
                        P   + +R  P   R+T +EL
Sbjct: 186 -------------PVHPVTRRRWP-NGRVTHDEL 205


>gi|312960550|ref|ZP_07775056.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
 gi|311285076|gb|EFQ63651.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
          Length = 142

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 7/127 (5%)

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              I+DTL +AR +HP  RN L++LCKRYG+  S R  HGALLDS +L+DVY+ M  G +
Sbjct: 12  HCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQT 71

Query: 180 QINFGFKTNEDRFFKEEKKTVP-NISLLKRDKPL--FTRITKEELDEHDKTIQTLGKN-- 234
            ++     ++     E     P  I  L  D+      R +++++ EH   ++ + K+  
Sbjct: 72  SLSLAGNASDGSGSAEGSGNRPSEIRRLPADRKPTTIIRASEQDMAEHAARLEAIAKSAG 131

Query: 235 --AIWDR 239
             A+W +
Sbjct: 132 APALWTQ 138


>gi|269960762|ref|ZP_06175133.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834426|gb|EEZ88514.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 238

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 10/171 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IV D+ETTGLDS+ D I+ IG V++ +      T Q     +  +  PE   ++ IT +
Sbjct: 51  YIVLDLETTGLDSEEDLILSIGWVDIANGKVDLATSQHMYINSDSQIKPETAVINHITPQ 110

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +  S       F  F   +    +AH    +  FIN  L R+ K    P   +DT+ 
Sbjct: 111 MLSEGVSIHDAMRAF--FHAAKGKILVAHACVVETQFINQYLHRVFKLSEPPLVWLDTMC 168

Query: 129 IARRKHPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           I +    +          L+    RYG+   +   H AL D+   +++ + 
Sbjct: 169 IEKHLQKAINPRDEIDVTLSGTRARYGLPEYNG--HNALADAVATAELLLA 217


>gi|318606038|emb|CBY27536.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 220

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 23/173 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET GL      I+EI +++++D + +N      + P+ R  S +A+ +H IT
Sbjct: 1   MYFRVIDTETCGL---EGGIVEIASIDVMDGALSN-PMSDLVSPD-RPISLDAMVIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++ KP  +    ++     + +  ++AHNA FD G +          P    + I T
Sbjct: 56  EEMVEGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICT 100

Query: 127 LSIARRKHPSSRNDLNSL--CKRYGITISHR-SKHGALLDSHLLSDVYIKMMV 176
           L +AR  +P  ++    L    R  +++      H AL D ++ + +  ++M 
Sbjct: 101 LKLARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIMR 153


>gi|290580136|ref|YP_003484528.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025]
 gi|254997035|dbj|BAH87636.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025]
          Length = 300

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 10/176 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIET GLD   + IIEIGAV++         F   +  + +    +  KL GI+ E
Sbjct: 131 YVVIDIETDGLDENENSIIEIGAVKIDPSQL--EEFNYLVKYD-KILPKQISKLTGISQE 187

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L +D      +  EF +F    +   + +   FD+ FIN +L+ +N+ PL  +R+ D +
Sbjct: 188 LLDRDGKDLQVVLQEFLNFIGNHD--LVGYGINFDIKFINKKLKELNQ-PLLKNRVYDLM 244

Query: 128 SIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
             A++ K       L ++ K Y   I     H AL DS L+ D+  KM      IN
Sbjct: 245 QYAKKEKLFLDNYKLQTVLKAY--EIEDEVPHRALHDSKLIYDLSTKMNKFLKGIN 298


>gi|15843331|ref|NP_338368.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           CDC1551]
 gi|148824916|ref|YP_001289670.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis F11]
 gi|218755494|ref|ZP_03534290.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis GM
           1503]
 gi|254366256|ref|ZP_04982300.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254552821|ref|ZP_05143268.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289763891|ref|ZP_06523269.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis GM 1503]
 gi|306778600|ref|ZP_07416937.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu002]
 gi|306786623|ref|ZP_07424945.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu003]
 gi|306790989|ref|ZP_07429311.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu004]
 gi|306791307|ref|ZP_07429609.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu005]
 gi|306795373|ref|ZP_07433675.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu006]
 gi|306801344|ref|ZP_07438012.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu008]
 gi|306805555|ref|ZP_07442223.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu007]
 gi|306969951|ref|ZP_07482612.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu009]
 gi|13883693|gb|AAK48182.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|134151768|gb|EBA43813.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148723443|gb|ABR08068.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           F11]
 gi|289711397|gb|EFD75413.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis GM 1503]
 gi|308328330|gb|EFP17181.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu002]
 gi|308328734|gb|EFP17585.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu003]
 gi|308332576|gb|EFP21427.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu004]
 gi|308340068|gb|EFP28919.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu005]
 gi|308344057|gb|EFP32908.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu006]
 gi|308347855|gb|EFP36706.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu007]
 gi|308351843|gb|EFP40694.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu008]
 gi|308352508|gb|EFP41359.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu009]
 gi|323717575|gb|EGB26777.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           CDC1551A]
          Length = 329

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 25/214 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T  
Sbjct: 16  WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAA 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  +P F+ I  E  D    +    +AHN  FD  F+ AE +   +  L    ++ T+ 
Sbjct: 73  MLDGQPQFADIAGEVVDVL--RGRTLVAHNVAFDYAFLAAEAEIA-EAELPVDFVMCTVE 129

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +G+    +  H A  D  +L+ +    +    +++     
Sbjct: 130 LARRLQLGVDNLRLETLAAHWGVP--QQRPHDAFDDVRVLTGILAAALESARELDVWL-- 185

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
                        P   + +R  P   R+T +EL
Sbjct: 186 -------------PVHPVTRRRWP-NGRVTHDEL 205


>gi|18310383|ref|NP_562317.1| DNA polymerase III subunit epsilon [Clostridium perfringens str.
           13]
 gi|18145063|dbj|BAB81107.1| probable DNA polymerase III epsilon chain [Clostridium perfringens
           str. 13]
          Length = 302

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG   + D       +   + P   +  P  + +HGI 
Sbjct: 1   MDFVAIDFETA--NEKRNSACSIGLTVVKDNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++++ +F+ I+ E  D+ +      IAHNA FD+  +   L   +  P        T
Sbjct: 58  PEDVENERTFNEIWEEIKDYID--GNLVIAHNAAFDISVLRKTLDFYDI-PYPDFEYACT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +A+  + S   + L ++ +      SH   H A  D+   +++ + +
Sbjct: 115 VVMAKNYYKSLPNHKLGTVSEALDFEFSH---HHAGEDARACANILLNI 160


>gi|58582091|ref|YP_201107.1| ribonuclease T [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623997|ref|YP_451369.1| ribonuclease T [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576299|ref|YP_001913228.1| ribonuclease T [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426685|gb|AAW75722.1| ribonuclease T [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367937|dbj|BAE69095.1| ribonuclease T [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520751|gb|ACD58696.1| ribonuclease T [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 211

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G DS    ++EI  V    +         T    L P  G +  P++L++ 
Sbjct: 25  PVVVDVETGGFDSNKHALLEIACVPIEMDADGRFFPGDTASAHLVPAPGLEIDPKSLEIT 84

Query: 64  GITDEF-----LKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +       ++K +   +F+           Q A  + HNA FD+ F+NA + R+  
Sbjct: 85  GIVLDHPFRLAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 144

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ K
Sbjct: 145 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCK 202

Query: 174 M 174
           +
Sbjct: 203 I 203


>gi|331006083|ref|ZP_08329419.1| Ribonuclease T [gamma proteobacterium IMCC1989]
 gi|330420120|gb|EGG94450.1| Ribonuclease T [gamma proteobacterium IMCC1989]
          Length = 201

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 82/189 (43%), Gaps = 17/189 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S+ D ++E+ A  + + D      ++ ++  + P  G      AL   
Sbjct: 10  PVVIDVETGGFNSRTDALLEVSAATLAMDDEGILSIDQLYEYHVTPFEGANIEQSALDFT 69

Query: 64  GITDE-FLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  E   ++      + +E +          +   A  +AHNA FD+GF+N   +R   
Sbjct: 70  GIDLENPDRNAIPEEDMLNELFRVIRKAVKRNDCTRAIMVAHNAHFDLGFVNEAAERCGM 129

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P   +DT +++          L   C+   I  S++  H A  D+   ++++  
Sbjct: 130 KRNPFHPFSCMDTATLSGLAF--GHTVLAQACQLAKIGFSNKEAHAASYDTRKTAELFCV 187

Query: 174 MMVGGSQIN 182
           ++    ++ 
Sbjct: 188 IVNRWQELG 196


>gi|255030410|ref|ZP_05302361.1| DNA polymerase III PolC [Listeria monocytogenes LO28]
          Length = 459

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 5/120 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTGL +  D IIE+  V++ +    ++ F+ F+ P G   S   + L GITD+
Sbjct: 344 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 401

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K       +   F ++  +     +AHNA FD+GFIN   +++  +  + + ++DTL 
Sbjct: 402 MVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLE 458


>gi|264676215|ref|YP_003276121.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2]
 gi|262206727|gb|ACY30825.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2]
          Length = 214

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 9/153 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTG+   +  R  E+  V L      +R FQ  +   G   SP   +L GIT+
Sbjct: 6   IAVIDFETTGMTPAQGARATEVAIVLLEQGRVVDR-FQSLM-QTGAWVSPFITELTGITN 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L+  P  + +  +   F     A  +AHNA FD  F  AEL         P     T+
Sbjct: 64  AMLRTAPPAAEVMRDAARFVGA--APMVAHNASFDSKFWQAELAL--AGEAAPQLFACTV 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHG 159
            ++RR +P    + L +L +   +  + R  H 
Sbjct: 120 LLSRRIYPQAPSHSLGNLARYLHLPSTGR-AHR 151


>gi|299531122|ref|ZP_07044534.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
 gi|298720825|gb|EFI61770.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
          Length = 213

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 9/153 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTG+   +  R  E+  V L      +R FQ  +   G   SP   +L GIT+
Sbjct: 5   IAVIDFETTGMTPAQGARATEVAIVLLEQGRVVDR-FQSLM-QTGAWVSPFITELTGITN 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L+  P  + +  +   F     A  +AHNA FD  F  AEL         P     T+
Sbjct: 63  AMLRTAPPAAEVMRDAARFVGA--APMVAHNASFDSKFWQAELAL--AGEAAPQLFACTV 118

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHG 159
            ++RR +P    + L +L +   +  + R  H 
Sbjct: 119 LLSRRIYPQAPSHSLGNLARYLHLPSTGR-AHR 150


>gi|162449983|ref|YP_001612350.1| exonuclease [Sorangium cellulosum 'So ce 56']
 gi|161160565|emb|CAN91870.1| exonuclease [Sorangium cellulosum 'So ce 56']
          Length = 298

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 10/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+E TGL  ++DR+IE+ A                + P           +HGI    
Sbjct: 34  VFLDLEMTGLRPESDRVIEVCAERTR-GDACEDAITSLVRPE--PGVFGNAHVHGIDPRE 90

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P+F+ +          + A  +AH A +DV F+ AEL R  +    P   +DTL +
Sbjct: 91  LAGAPTFAELCDRIDQV--TEGAVLVAHAAAWDVAFLEAELARAGRARRLPH-YLDTLVL 147

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS-KHGALLDSHLLSDVYIKMMV 176
           +RR      + L SLC+  G+   HR   H A  D H L  V+ K++ 
Sbjct: 148 SRRAFALPSHSLASLCRELGV---HRERAHRAEDDVHALRAVFRKIVE 192


>gi|325298421|ref|YP_004258338.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
 gi|324317974|gb|ADY35865.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
          Length = 258

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 14/179 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +   DRI+EI  +++  + ++ ++T +  + P        +
Sbjct: 1   MKLNLKNPLVFFDLETTGTNINTDRIVEICYLKIYPNGNEESKTMR--INPEMH-IPETS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP- 117
             +HGI DE + D P+F  I  E       + A+    N  +FDV  +  E  R   D  
Sbjct: 58  TAIHGIHDEDVADCPTFKQIAKELAKSI--EGADIAGFNSNRFDVPVLVEEFLRAGIDID 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMM 175
           L   + ID   I  +     +  L++  K Y G  +     H A  D+    +V    +
Sbjct: 116 LSKRKFIDVQVIYHKL---EQRTLSAAYKFYCGKNLED--AHTAEADTRATYEVLKAQL 169


>gi|300214810|gb|ADJ79226.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius CECT 5713]
          Length = 177

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K      +    + +    ++ F   + P+    S   +++HGIT
Sbjct: 1   MNFVAIDFETA--NPKRYSACSLALTVVKNNLIADQ-FYSLIKPDT-DFSWRNIQVHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ +++ PSF  ++    +FF   N   +AHNA FD   +   L+  +   L   +++DT
Sbjct: 57  EKQVQNAPSFPELWPHIQNFFTPNNL-IVAHNASFDSSVLLRTLEHYDI-TLPHYQLLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L  +++       + L+++C    I + H   H AL DS   +++ +
Sbjct: 115 LRTSKKFFKDFENHKLDTICNNLNIDLKHH--HNALFDSTACAEILL 159


>gi|71414299|ref|XP_809256.1| exonuclease [Trypanosoma cruzi strain CL Brener]
 gi|70873611|gb|EAN87405.1| exonuclease, putative [Trypanosoma cruzi]
          Length = 316

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 85/216 (39%), Gaps = 49/216 (22%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELL-------DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  I  D+ETTG  ++ D I+ IGAVEL         +    R+F   + P+ + +S +A
Sbjct: 94  MSAICVDLETTGFSAQRDDIVSIGAVELRWDGTTLQQWVLGARSFFRTVRPS-KPSSHQA 152

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFF-------------------------------- 87
             +HG++ E L+D P    + S+F  F                                 
Sbjct: 153 EAVHGLSFEMLRDAPLLEDVISDFAAFLIQLDGNLPQSGQTEENHRAKPGDLSAKKRCTA 212

Query: 88  -NEQNAEW-----IAHNAKFDVGFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRN 139
                        IAHNA FD  F+   +          + + +  T S+ R  +     
Sbjct: 213 ATTAGCVLTLPPVIAHNANFDASFLQRAVSGAGWRVVWDEYAPLTCTQSMFRALYSHQAA 272

Query: 140 DLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKM 174
           DL+  C+  G+  S R  +H AL D+ L   +++++
Sbjct: 273 DLSRACQFCGVDTSGRDERHDALHDAQLCGRLFLRL 308


>gi|217978759|ref|YP_002362906.1| DNA polymerase III subunit epsilon [Methylocella silvestris BL2]
 gi|217504135|gb|ACK51544.1| Exonuclease RNase T and DNA polymerase III [Methylocella silvestris
           BL2]
          Length = 222

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 8/174 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHG 64
           K   + FD ETTGLD + D II I AV++      T+  F+  + P  R  + EA+K+H 
Sbjct: 29  KDEAVAFDCETTGLDPRRDDIITIAAVKIRGNRILTSERFEAVIRPEAR-MNAEAIKVHR 87

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRI 123
           + +  ++       I  +F  F   +    I +  +FDV  I+  L   +  +  +P   
Sbjct: 88  LREADVEAGKRIEKIMPQFLHFIGGR--PLIGYYLEFDVRMIDKYLLGLLGIELPNPLIE 145

Query: 124 IDTLSIARRKH---PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  L   R+     P +  DL+       + +    +H A  D+ + + +YIK+
Sbjct: 146 VSNLYYERKYGDAPPGATIDLSFAAILKDLDLPMLDQHDAFNDALMTAMIYIKL 199


>gi|304440352|ref|ZP_07400241.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371104|gb|EFM24721.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 296

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 11/167 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++   +  DIET GLD K ++IIEIGA++      +   F   +  +  K     ++L G
Sbjct: 125 SEKTFVFLDIETDGLDEKTNKIIEIGAIKSD----SKEEFHKIVKIDT-KLPKNIIELTG 179

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD+ L+   +   I  E  +F   ++   + +  KFD+ FIN +L+    D L  ++  
Sbjct: 180 ITDKELESGENIKEILKELKEFIGLED--LVGYGIKFDIKFINRKLKLNGLDVL-TNKTW 236

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           D +   +R+        L ++ K YGI    +  H AL DS L+ ++
Sbjct: 237 DLMDFVKREKSFLENYKLETVLKEYGID--KKVPHRALEDSKLIYEL 281


>gi|332162002|ref|YP_004298579.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325666232|gb|ADZ42876.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 220

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 23/173 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET GL      I+EI +++++D + +N      + P+ R  S +A+ +H IT
Sbjct: 1   MYFRVIDTETCGL---EGGIVEIASIDVMDGALSN-PMSDLVSPD-RPISLDAMVIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++ KP  +    ++     + +  ++AHNA FD G +          P    + I T
Sbjct: 56  EEMVEGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICT 100

Query: 127 LSIARRKHPSSRNDLNSL--CKRYGITISHR-SKHGALLDSHLLSDVYIKMMV 176
           L +AR  +P  ++    L    R  +++      H AL D ++ + +  ++M 
Sbjct: 101 LKLARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIMR 153


>gi|238789017|ref|ZP_04632806.1| Exodeoxyribonuclease 10 [Yersinia frederiksenii ATCC 33641]
 gi|238722781|gb|EEQ14432.1| Exodeoxyribonuclease 10 [Yersinia frederiksenii ATCC 33641]
          Length = 219

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 23/172 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET GL      I+EI +++++D   +N      + P+ R  S +A+ +H IT
Sbjct: 1   MYFRVIDTETCGL---EGGIVEIASIDVVDGVLSN-PMSDLVSPD-RPISIDAMVIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++ KP  +    ++     + +  ++AHNA FD G +          P    + I T
Sbjct: 56  EDMVEGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICT 100

Query: 127 LSIARRKHPSSRNDLNSL--CKRYGITISHR-SKHGALLDSHLLSDVYIKMM 175
           L +AR  +P  ++    L    R  +++      H AL D ++ + +  ++M
Sbjct: 101 LKLARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIM 152


>gi|269968066|ref|ZP_06182103.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827312|gb|EEZ81609.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 238

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 10/170 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IV D+ETTGLDS+ + I+ +G VE+        T Q     +  K  PE + ++ IT +
Sbjct: 51  FIVLDLETTGLDSEEEVILSMGWVEIRQGHIDLATSQHLYVHSDSKIKPETIVVNHITQQ 110

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D  S       F+     +N   +AH    +  FIN  LQR+      P   IDTL 
Sbjct: 111 MLTDGISIHEAMRTFFK--AAENKVIVAHGCIVETSFINQYLQRVFNIKELPLIWIDTLR 168

Query: 129 IARRKHP------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I +R          S   L +  +RYG+   +   H AL D+   +++ +
Sbjct: 169 IEKRLQRAINASDESDVTLAATRERYGLPAYNG--HNALADAIATAELLL 216


>gi|150025263|ref|YP_001296089.1| DNA polymerase III, epsilon subunit [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771804|emb|CAL43278.1| Probable DNA polymerase III, epsilon subunit [Flavobacterium
           psychrophilum JIP02/86]
          Length = 160

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 63/170 (37%), Gaps = 16/170 (9%)

Query: 7   MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M     D ET T           +G V + +    +  F   + P   + SP  + +HGI
Sbjct: 1   MTFTAIDFETATAFHP-----CSVGIVTVQNGVIVDE-FVTLIKPPNNQYSPFTIAVHGI 54

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122
                 +  SF  ++ E       QN   +AHN  FD   +   +     D       +R
Sbjct: 55  RPRDTVNAKSFLEVYPEIKKRL--QNKTVVAHNESFDRNVLAKSMALYGLDYETLNISNR 112

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              TL I + K       L+  C+   I ++H   H AL D+   + +Y+
Sbjct: 113 WECTLKIYKAKG-FKPTKLSDCCQEMNIKLNH---HEALSDARACAKLYL 158


>gi|15894025|ref|NP_347374.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum ATCC
           824]
 gi|15023620|gb|AAK78714.1|AE007589_2 DNA polymerase III epsilon subunit (3'-5' exonuclease) containing
           BRCT domain [Clostridium acetobutylicum ATCC 824]
          Length = 306

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+    D ET   + K +    IG V + D     ++    + P   +  P  + +HGI 
Sbjct: 1   MKFTAIDFETA--NEKRNSPCSIGIVVVKDGHVVEKSHH-LIRPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++ +P F  ++ +   +F+  +   IAHNA FD+  +    +  N + L     I T
Sbjct: 58  PAMVEKEPEFDKVWEKIKHYFD--DTLVIAHNASFDISVLRKSAELYNIE-LPEFNYICT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +AR  +    N  LN++    G    H   H AL D+   S++ + +
Sbjct: 115 MKLARNFYKGIENAKLNTVNNFLGYEFRH---HDALYDALACSNIMLSI 160


>gi|254884285|ref|ZP_05256995.1| DNA Pol III epsilon chain [Bacteroides sp. 4_3_47FAA]
 gi|254837078|gb|EET17387.1| DNA Pol III epsilon chain [Bacteroides sp. 4_3_47FAA]
          Length = 260

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 14/175 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +   DRI+EI  +++  + ++  +T +  + P       ++
Sbjct: 3   MKLNLKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEETKTMR--INPEMH-IPEQS 59

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI D  + D P+F  +  E     + +  +    N  +FD+  +  E  R   D  
Sbjct: 60  SAIHGIYDADVADCPTFKEVAKEIAR--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVDID 117

Query: 119 DPSR-IIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVY 171
              R  ID   I  +     +  L++  K Y G  +     H A  D+    +V 
Sbjct: 118 MMKRKFIDVQVIYHKL---EQRTLSAAYKFYCGKNLED--AHTAEADTRATYEVL 167


>gi|150005410|ref|YP_001300154.1| DNA Pol III epsilon chain [Bacteroides vulgatus ATCC 8482]
 gi|212694908|ref|ZP_03303036.1| hypothetical protein BACDOR_04445 [Bacteroides dorei DSM 17855]
 gi|237727134|ref|ZP_04557615.1| DNA Pol III epsilon chain [Bacteroides sp. D4]
 gi|265750418|ref|ZP_06086481.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_33FAA]
 gi|294777188|ref|ZP_06742645.1| exonuclease [Bacteroides vulgatus PC510]
 gi|319640629|ref|ZP_07995346.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_40A]
 gi|149933834|gb|ABR40532.1| DNA Pol III epsilon chain [Bacteroides vulgatus ATCC 8482]
 gi|212662468|gb|EEB23042.1| hypothetical protein BACDOR_04445 [Bacteroides dorei DSM 17855]
 gi|229433990|gb|EEO44067.1| DNA Pol III epsilon chain [Bacteroides dorei 5_1_36/D4]
 gi|263237314|gb|EEZ22764.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_33FAA]
 gi|294449057|gb|EFG17600.1| exonuclease [Bacteroides vulgatus PC510]
 gi|317387750|gb|EFV68612.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_40A]
          Length = 258

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 14/175 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +   DRI+EI  +++  + ++  +T +  + P       ++
Sbjct: 1   MKLNLKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEETKTMR--INPEMH-IPEQS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI D  + D P+F  +  E     + +  +    N  +FD+  +  E  R   D  
Sbjct: 58  SAIHGIYDADVADCPTFKEVAKEIAR--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVDID 115

Query: 119 DPSR-IIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVY 171
              R  ID   I  +     +  L++  K Y G  +     H A  D+    +V 
Sbjct: 116 MMKRKFIDVQVIYHKL---EQRTLSAAYKFYCGKNLED--AHTAEADTRATYEVL 165


>gi|166711531|ref|ZP_02242738.1| ribonuclease T [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 211

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G DS    ++EI  V    +         T    L P  G +  P++L++ 
Sbjct: 25  PVVVDVETGGFDSNKHALLEIACVPIEMDADGRFFPGDTASAHLVPAPGLEIEPKSLEIT 84

Query: 64  GITDEF-----LKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +       ++K +   +F+           Q A  + HNA FD+ F+NA + R+  
Sbjct: 85  GIVLDHPFRLAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 144

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ K
Sbjct: 145 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCK 202

Query: 174 M 174
           +
Sbjct: 203 I 203


>gi|227548945|ref|ZP_03978994.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078970|gb|EEI16933.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 472

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 83/212 (39%), Gaps = 13/212 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC---PNGRKNSPEALKLHGI 65
            + FD+ET   +     I +IG V ++D  +  R    +LC   P   +  P  + +HGI
Sbjct: 122 FVGFDVETA--NPAWGSICQIGLVRVIDGREVERV--TWLCTPPPGLDEFDPSNVAIHGI 177

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + E ++  P  +    E  +F  E     +AHNA+FD   +    + + +D +       
Sbjct: 178 SAETVEGSPPAAQRIDELVEFVGE--LPVVAHNAQFDATALREACRAVGRD-IPNIMFAC 234

Query: 126 TLSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           TL+ +R  K     + L +L + +G+ +     H A  D+   + + + +          
Sbjct: 235 TLAQSRAAKLKVQNHRLPTLAEHFGVQLEKH--HDAGEDAAACAGILVGLARDAGHEGSV 292

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                   F         ++ + RD+    R 
Sbjct: 293 MSFVHATGFTLGVINDERVTPVLRDRSGTARA 324


>gi|298252829|ref|ZP_06976623.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella
           vaginalis 5-1]
 gi|297533193|gb|EFH72077.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella
           vaginalis 5-1]
          Length = 337

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 20/176 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS---------PEA 59
            +V D ETTGL+SK D+IIEIGAV+ +D       FQ  +  N    S          E 
Sbjct: 156 FVVIDCETTGLNSKVDKIIEIGAVKFIDGKI--EEFQKLININCDSVSNFNKNNFILNEI 213

Query: 60  LKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP- 117
           ++L GIT   L+           EF DF   +    + +N +FD+ F+N+ L  +++   
Sbjct: 214 IELTGITSSMLESYGVRLDLALKEFIDFV--EKLPVLGYNVQFDMSFLNSALSSLDERFD 271

Query: 118 --LDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             L  ++I D     +++    +N  L ++   Y I  +    H ALLD+ L + +
Sbjct: 272 HSLSINKIFDISRFVKKEKKFLKNYQLKTVLHEYNI--AESVPHRALLDARLTAHL 325


>gi|78047167|ref|YP_363342.1| ribonuclease T [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325925832|ref|ZP_08187202.1| RNAse T [Xanthomonas perforans 91-118]
 gi|123585431|sp|Q3BV71|RNT_XANC5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|78035597|emb|CAJ23268.1| ribonuclease T [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325543767|gb|EGD15180.1| RNAse T [Xanthomonas perforans 91-118]
          Length = 213

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 17/181 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G D     ++EI  V    +         T    L P  G +  P++L++ 
Sbjct: 27  PVVVDVETGGFDWNKHALLEIACVPIEMDTDGRFFPGETASAHLVPAPGLEIDPKSLEIT 86

Query: 64  GITDEF-----LKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +       ++K +   +F+           Q A  + HNA FD+ F+NA + R+  
Sbjct: 87  GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 146

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ K
Sbjct: 147 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCK 204

Query: 174 M 174
           +
Sbjct: 205 I 205


>gi|94263435|ref|ZP_01287248.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
 gi|94270278|ref|ZP_01291698.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
 gi|93450870|gb|EAT01889.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
 gi|93456165|gb|EAT06304.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
          Length = 238

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 19/180 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD E TGLD + D I+ IGAV + +       TF V + P+      ++  +H +T 
Sbjct: 40  FVVFDTELTGLDRRRDEIVSIGAVRINNLRIMVGDTFYVQVKPSQA-LPKDSTLIHRLTP 98

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L D P  +++   F D+  +  +  + H    DV F+N    R     L  +  +DT+
Sbjct: 99  HQLSDAPPLATVLPGFIDYCGQ--SLLVGHFVGLDVAFVNRACLRYYGARLS-NPCLDTM 155

Query: 128 SIAR------------RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +A+            R       +L +L  +YG+     + H A  D+   + ++I ++
Sbjct: 156 HLAQTHTEMQWQQYHDRFRMDISYNLAALGAKYGLP--AFTHHNAYEDALQTAYLFIYLV 213


>gi|255022249|ref|ZP_05294243.1| Ribonuclease T [Acidithiobacillus caldus ATCC 51756]
 gi|254968305|gb|EET25873.1| Ribonuclease T [Acidithiobacillus caldus ATCC 51756]
          Length = 211

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 16/187 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV--ELLDYS-KTNRTFQVFLCPN-GRKNSPE 58
           R      +V D+E+ G ++    ++EI A+     D   +        + P  G +  P 
Sbjct: 8   RFRGFLPVVVDVESAGFEAHRHALLEIAAIVITHADGQWQLGPRHHFHVEPFAGAELDPA 67

Query: 59  ALKLHGITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAEL 110
           AL  +GI   + L+     + +F   +            + A  + HNA FD+ F++A  
Sbjct: 68  ALAFNGIDPYQPLRGALPEAEVFGTLYRALRKAVKEAHCRRAVLVGHNAHFDLSFLHAAE 127

Query: 111 QRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           +R+     P  P  +IDT+S+A      +   L    ++ G+    R  H AL D+   +
Sbjct: 128 KRLRLKNSPFHPFSVIDTVSLAALAL--AETVLAKAVQKAGLAWDGREAHSALYDAERTA 185

Query: 169 DVYIKMM 175
           +++  ++
Sbjct: 186 ELFCWIV 192


>gi|182626433|ref|ZP_02954185.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|177908230|gb|EDT70788.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
          Length = 302

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 71/169 (42%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG   + +       +   + P   +  P  + +HGI 
Sbjct: 1   MDFVAIDFETA--NEKRNSACSIGLTVVKNNKIVEEKY-FLIKPCEMRFQPMNIWIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++++ +F+ I+ E  D+ +      IAHNA FD+  +   L   +           T
Sbjct: 58  PEDVENERTFNEIWEEIKDYID--GNLVIAHNAAFDISVLRKTLDFYDI-LYPDFEYACT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +A+  + S   + L ++ +  G   SH   H A  D+   +++ + +
Sbjct: 115 VVMAKNYYKSLPNHKLGTVSEALGFEFSH---HHAGEDARACANILLNI 160


>gi|154249517|ref|YP_001410342.1| DNA polymerase III, epsilon subunit [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153453|gb|ABS60685.1| DNA polymerase III, epsilon subunit [Fervidobacterium nodosum
           Rt17-B1]
          Length = 188

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 7/173 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
             ++      DIETTG+D    DRIIEI  + +             L          A  
Sbjct: 1   MWDENVYCCVDIETTGIDPSMGDRIIEIAIIPIYKGKIVKEWIYTSLVNPKVNIQAYAQS 60

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H I++  +++ P    I S    +   ++   + HNAKFD+ F++   + + + PLD  
Sbjct: 61  VHKISNSDIENAPELDEIISVVRKY--SKDTIMVFHNAKFDLTFLDYAAKEVGQLPLDVY 118

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDTL I++  +   R  L SL +   I  SH+  H A  D+ + ++V+I+ 
Sbjct: 119 -YIDTLDISKAVY-GRRRKLESLAQEMKI--SHKVTHRAYDDAFVTANVFIRF 167


>gi|227513634|ref|ZP_03943683.1| DNA-directed DNA polymerase III [Lactobacillus buchneri ATCC 11577]
 gi|227083150|gb|EEI18462.1| DNA-directed DNA polymerase III [Lactobacillus buchneri ATCC 11577]
          Length = 177

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET   ++K      +  V + +   T+  F   + P     S   + +HGI 
Sbjct: 1   MNFAAMDFETA--NAKRASACSLALVIVRNNQVTHE-FYSLINPET-DFSWRNINVHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + + P+F  ++      F   N   +AHNA FD   +   L+R +   L     +DT
Sbjct: 57  KQDVANAPTFPELWDHIAPLFTA-NKLVVAHNASFDNSVLKRTLERYDL-LLPHFLTLDT 114

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L  +++ +P    + LN++C    I + H   H AL DS   +++ +
Sbjct: 115 LKTSKQFYPQMVNHKLNTVCDELHIELEHH--HNALDDSVACANILL 159


>gi|269104806|ref|ZP_06157502.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161446|gb|EEZ39943.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 249

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 84/203 (41%), Gaps = 29/203 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
               ++  +  D+ETTGLDS+ D+II +G V   LD     ++    + P+ R  + E++
Sbjct: 52  TPLKEVPFVALDLETTGLDSQQDQIISVGLVPFTLDRIYCRQSAHWVVNPH-RLLNEESV 110

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLD 119
            +HGITD  ++D P    I  +            + H    + GF+  A L+R+ +    
Sbjct: 111 VIHGITDSEVQDAPDLRVILEQVLQALA--GKIVVVHYKNIERGFLNQALLKRLGEGIEF 168

Query: 120 PSRIIDTL--------SIARRKHPSSRND------LNSLCKRYGITISHRSKHGALLDSH 165
           P  ++DTL           R      +        L    +RYG+       H AL D+ 
Sbjct: 169 P--VVDTLDLEAAIQYRQCRGFFNRLKGKKPGSVRLGHARERYGLPTY--QPHHALTDAL 224

Query: 166 LLSDVYIKMMVGGSQINFGFKTN 188
             +++        +Q+ + F  N
Sbjct: 225 ASAELL------QAQLAYYFTPN 241


>gi|237738098|ref|ZP_04568579.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419978|gb|EEO35025.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
          Length = 474

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 80/167 (47%), Gaps = 11/167 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I+  +ETTGL+   D I++I A+ + + +  + TF+ F+ P   +   EA +++GIT E
Sbjct: 7   YIIVSLETTGLNHLVDEILKIEAIRIENGNIVD-TFKEFIKPK-FEIPKEASRINGITFE 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+ PS   +  +F +F  ++    +A+NA+F   FI    +R           ID LS
Sbjct: 65  DVKNSPSIEDVLDKFKNF-RKKGDILVAYNAEFVSKFIGFNFKRYKNSIFS-HEFIDLLS 122

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + R  + +    +L  +     I  +++ K      + +  ++   +
Sbjct: 123 LVRYIYKNIPSYNLKYVATYLKIDSTNKDK------TIICYEILKNL 163


>gi|110637752|ref|YP_677959.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280433|gb|ABG58619.1| DNA polymerase III epsilon subunit [Cytophaga hutchinsonii ATCC
           33406]
          Length = 283

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 12/173 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVFLCPNGRKNSPEA 59
           ++ NK     FD+ETTG++   DRIIEI  V +   D     +TF+  + P G     ++
Sbjct: 16  MKINK-PIAFFDLETTGVNISTDRIIEICIVRVSPPDEKVEVKTFR--VNP-GMPIPDQS 71

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL 118
             +HGI D+ + DKP+F+ I  +   F   ++ +    N+ +FD+  +  E  R   +  
Sbjct: 72  SAIHGIYDKDVADKPTFTEIAHQINQFM--KDCDLGGFNSIRFDIPLLIEEFFRAGIEFD 129

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              R +  +   R  H      L +  K Y       + H A  D+     + 
Sbjct: 130 ITKRKL--VDSQRIFHLMEPRTLGAAYKFY-CNKDLENAHSAEADTLATYYIL 179


>gi|227524779|ref|ZP_03954828.1| DNA-directed DNA polymerase III [Lactobacillus hilgardii ATCC 8290]
 gi|227088056|gb|EEI23368.1| DNA-directed DNA polymerase III [Lactobacillus hilgardii ATCC 8290]
          Length = 177

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET   ++K      +  V + +   T+  F   + P     S   + +HGI 
Sbjct: 1   MNFAAMDFETA--NAKRASACSLALVIVRNNQVTHE-FYSLINPET-DFSWRNINVHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + + P+F  ++      F   N   +AHNA FD   +   L+R +   L     +DT
Sbjct: 57  KQDVANAPTFPELWDHIAPLFTA-NKLVVAHNASFDNSVLKRTLERYDL-LLPHYLTLDT 114

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L  +++ +P    + LN++C    I + H   H AL DS   +++ +
Sbjct: 115 LKTSKQFYPQMVNHKLNTVCDELHIELEHH--HNALDDSVACANILL 159


>gi|259908234|ref|YP_002648590.1| exodeoxyribonuclease X [Erwinia pyrifoliae Ep1/96]
 gi|224963856|emb|CAX55358.1| DNA exonuclease X [Erwinia pyrifoliae Ep1/96]
 gi|283478165|emb|CAY74081.1| exodeoxyribonuclease X [Erwinia pyrifoliae DSM 12163]
          Length = 221

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 23/168 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GL      ++E+ +V+++     N      + P+ R  S +A+ +H IT+  +
Sbjct: 4   VIDTETCGLQGG---VVEVASVDVISGQILN-PMSDLISPD-RPISRQAMAVHKITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP+       +       +  ++AHNA FD   +          P      I T+++A
Sbjct: 59  RGKPAIEQAIGRYH-----GSPFYVAHNASFDRRML----------PEMHGDWICTMTLA 103

Query: 131 RRKHPSSRNDLNSLCKRYGITIS---HRSKHGALLDSHLLSDVYIKMM 175
           RR  P  +    +L +   + +S       H AL D ++ + + +++M
Sbjct: 104 RRLWPGLKYTNEALRQSLQLEVSPPADLHAHRALYDCYVTAALLMRIM 151


>gi|325854302|ref|ZP_08171501.1| exonuclease [Prevotella denticola CRIS 18C-A]
 gi|325484096|gb|EGC87030.1| exonuclease [Prevotella denticola CRIS 18C-A]
          Length = 284

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 12/176 (6%)

Query: 2   IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  +  +VFD+ETTGLD  NDRII+I  +++L   K  R   +F+ P  +    E  
Sbjct: 1   MKLNLTKPLVVFDLETTGLDLVNDRIIQISFIKVLPDGKEERE-NIFINPE-KPIPTEVT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
           +L GI+D+ + D P+F     E  D F     ++   N  +FDV  +  E  R   D   
Sbjct: 59  QLTGISDKDVADAPTFRQKAKELADRF--TGCDFAGFNSNRFDVPMLAEEFLRAGVDFDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYI 172
             SR+ID  +I    H   R +L +  K Y G  +      H A  D+     V  
Sbjct: 117 SKSRLIDAQNI---YHKMERRNLAAAYKFYCGRKMEEDFEAHKADQDTEATWRVLQ 169


>gi|260424856|ref|ZP_05779017.1| DNA polymerase III PolC-type [Dialister invisus DSM 15470]
 gi|260403394|gb|EEW96941.1| DNA polymerase III PolC-type [Dialister invisus DSM 15470]
          Length = 196

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 15/173 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG+ S    I EI A+ ++   +   TF   +   G        +L GIT +
Sbjct: 31  YTVMDIETTGMYSD---ITEIAALCVV-SGEIRDTFHTLVKAKG-PIEKRVERLTGITSD 85

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+++P    +   F  F   +    + H    D+  I+  L+ + K PL  +  IDT S
Sbjct: 86  MLEEQPPIDDVLPIFMTFI--EGFPLVGHGLDSDLIVIDRNLKAVGK-PLVTNDYIDTHS 142

Query: 129 IARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +A+   P       +  + +L + Y +  S  + H A+ D      ++ +++ 
Sbjct: 143 LAKLLLPEREGEHRKYSVKALAEYYELPCS--TFHRAMDDCMAEKMLFERLLA 193


>gi|170755669|ref|YP_001779899.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str.
           Okra]
 gi|169120881|gb|ACA44717.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str.
           Okra]
          Length = 309

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +KD+  F  I+ +  D+FN  N   IAHNA FD+  + + L+  N   +     I T
Sbjct: 58  PHMVKDELEFDKIWQKIKDYFN--NNLVIAHNASFDMSVLRSTLKLYNIK-MPSFEYICT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G    H   H AL D+   S++ + +
Sbjct: 115 MKLSKNFYSNIDNARLNTINNFLGYKFKH---HDALADAMACSNILLNI 160


>gi|326444059|ref|ZP_08218793.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 285

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 70/182 (38%), Gaps = 17/182 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    + FD+ETTG D +  RI+    VE        R    +L   G +   +A  
Sbjct: 46  MAWHGEPLVGFDLETTGTDPREARIVTAAVVEARAGEPVRRR--TWLADPGVRIPAQASA 103

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGIT E    +      +  E          +    +A+NA FD+  + AE++R     
Sbjct: 104 IHGITSERAAAEGRPAREVADEVAAELCGYWARGVPVVAYNAAFDLSLLAAEIRRYGLPS 163

Query: 118 L-------DPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           L           +ID  T+  A  ++   +  L ++   YG+ +     H A  D+    
Sbjct: 164 LSDRLGGRPTGPVIDPYTIDRAVDRYRKGKRTLEAVSAEYGVPLED--AHDATADALAAV 221

Query: 169 DV 170
            V
Sbjct: 222 RV 223


>gi|225012673|ref|ZP_03703108.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium
           MS024-2A]
 gi|225003206|gb|EEG41181.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium
           MS024-2A]
          Length = 257

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 10/183 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  +       FD+ETTG D   DRI+EI  ++L  D  +  + ++    P  +    EA
Sbjct: 1   MKLQLTKPLCFFDLETTGTDISKDRIVEIAVLKLHPDGLQEKKEWRT--NPE-QPIPAEA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGITDE +  +P+F  + +E + F   +  +   +N  +FD+  +  EL R   D  
Sbjct: 58  SAVHGITDEMVASEPTFKELSNEIYSFI--KGCDLAGYNSDRFDIPLLVEELLRAEVDF- 114

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              +   T+ +    H   +  L +  + Y         H A  D+    DV I  +   
Sbjct: 115 -DFKNNKTVDVQTIFHKMEQRTLTAALRFY-CNEELTDAHSAHADTKATHDVLIAQLDRY 172

Query: 179 SQI 181
            ++
Sbjct: 173 QEL 175


>gi|295400147|ref|ZP_06810127.1| Exonuclease RNase T and DNA polymerase III [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977926|gb|EFG53524.1| Exonuclease RNase T and DNA polymerase III [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 245

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 81/202 (40%), Gaps = 18/202 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +  +++  ++ D+ETTG   +  D I+ + A + +       T+   +CP  +   P   
Sbjct: 57  MSLDEVTFMIIDMETTGFSPQHGDEILAMAAAKTV-RGAVKETYYTLVCPE-KAIPPHIS 114

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GIT + ++  P        F  F +      I ++   D+ F+N  L    +     
Sbjct: 115 ALTGITAKDVQYAPRLHEALRSFLSFIS--GGVMIGYHIGHDLAFLNHFLWTHYRTKWA- 171

Query: 121 SRIIDTL----SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +R  D       + RR  P     L+     YGI+   R  H A  D   +++++ +++ 
Sbjct: 172 ARFFDMQPIVEMVQRRWFP----TLDDALGHYGISCERR--HTADGDVWAMAELWAQLLA 225

Query: 177 GGSQINFGFKTNEDRFFKEEKK 198
              + N   +T  D +    K+
Sbjct: 226 ELKRNN--IETLYDLYSALGKR 245


>gi|144898742|emb|CAM75606.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 173

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 10/172 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   D+  D    +    + + +    T+   + P     S     +HGIT
Sbjct: 1   MDFIALDFETA--DNGRDSACSLALAVVKNGT-VAETWHRLIRPPRA--SQMFTHIHGIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +KD+P F   + E  D  +       AHNA FD G +    +         +  + T
Sbjct: 56  WDMVKDQPDFGHFWPEIRDLIDAAP-FLAAHNAPFDKGVLAECCRAHGHGA-PLTPFVCT 113

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           + +AR         L  +C+     ++H   H AL D+   +++ +  +  G
Sbjct: 114 VRVARDTWNLRPTKLPDVCRFLAQPLNH---HDALSDAVACAEIMLAALRDG 162


>gi|294675436|ref|YP_003576052.1| exonuclease [Prevotella ruminicola 23]
 gi|294473646|gb|ADE83035.1| exonuclease [Prevotella ruminicola 23]
          Length = 163

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 69/171 (40%), Gaps = 10/171 (5%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR     D ET   +++   +  +G V + +    + TF   + P     +    ++HG+
Sbjct: 1   MRDFAAIDFETA--NNERTSVCSVGVVIVRNGEIVD-TFYSLIQPEPNYYNYWCSQVHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + E  +D P F  ++ +     +      +AHN  FD   + A   R  +          
Sbjct: 58  SREDTEDAPVFPEVWKQIEPLID--GLPLVAHNKSFDESCLKAVF-RCYQMDYPDYPFYC 114

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T   +R+  P   N  L+++ +  G  + +   H AL D+   + +  +++
Sbjct: 115 TCVASRKAFPQLPNHQLHTVSEYCGYHLENH--HHALADAEACAWIAREIL 163


>gi|153817923|ref|ZP_01970590.1| Gp39 [Vibrio cholerae NCTC 8457]
 gi|126511550|gb|EAZ74144.1| Gp39 [Vibrio cholerae NCTC 8457]
          Length = 184

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 19/179 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   N    I+ D ETTGLDS + RI+E+  +   D     + +   + P     SPE  
Sbjct: 1   MQALNLDNAIILDTETTGLDS-DARIVEVSII---DAQTGIKLYSSLVNPLC-SISPEVT 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGIT++ + D P+F  ++++   + +  +A    +N  FD       L+       + 
Sbjct: 56  AIHGITNDMVIDMPTFDKVWNDIKGYLS--DAVIYVYNLDFDYRMFAQSLRPFGYPVANL 113

Query: 121 SRII----DTLSIARRKHPSSRND--------LNSLCKRYGITISHRSKHGALLDSHLL 167
            R        +      + S   +        L + C +  +  S  + H AL D  + 
Sbjct: 114 VRFFGGGVCVMRWYANFYGSLCGNDVTPRFQRLTNACYQQDVDTSDLTAHRALADCEMT 172


>gi|222149115|ref|YP_002550072.1| DNA polymerase III epsilon subunit-like 3-5 exonuclease
           [Agrobacterium vitis S4]
 gi|221736100|gb|ACM37063.1| DNA polymerase III epsilon subunit-like 3-5 exonuclease
           [Agrobacterium vitis S4]
          Length = 207

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 75/185 (40%), Gaps = 10/185 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    + + I  D ET   + +      +G +  ++  +  R  +  + P   + S   +
Sbjct: 1   MSTPLQPKIIAIDFETA--NEERGSACSVG-LAFVENGQVVRVEERLIRPKTMRFSSFNI 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI  + ++D   F  +  EF D  +   A  +AHNA FD+    A    + + P   
Sbjct: 58  AIHGIRPDHVEDAGEFPEVMDEFAD--DFSGAMVVAHNAAFDLSVWRASCD-LYRQPYPS 114

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              + ++ +A++  P    + LN L     ++  H   H A  D+ + +   I MM    
Sbjct: 115 LSYVCSVKLAQKVWPQLPSHRLNVLAAHLQLSFRH---HNAAEDASVCAQAVIAMMERRG 171

Query: 180 QINFG 184
             + G
Sbjct: 172 AQDLG 176


>gi|149911269|ref|ZP_01899891.1| exonuclease [Moritella sp. PE36]
 gi|149805654|gb|EDM65654.1| exonuclease [Moritella sp. PE36]
          Length = 138

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 66/138 (47%), Gaps = 7/138 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +  N    I+ D ETTGL     DR IEIGAV++ D   T R FQ  + P GR+ S    
Sbjct: 1   MIVNADTLIILDFETTGLSPDMGDRAIEIGAVKIEDGEITGR-FQELMYP-GRRVSSFIA 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
               IT++ L D      +   F DF   Q    +AHNA FD  F++AEL RI++     
Sbjct: 59  DYTSITNDMLVDAAPCEEVMHRFADFI--QGYNLVAHNASFDKRFLDAELTRIDRGY--E 114

Query: 121 SRIIDTLSIARRKHPSSR 138
                +L +ARR     R
Sbjct: 115 GEFSCSLLVARRIFKMHR 132


>gi|305666543|ref|YP_003862830.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170]
 gi|88708810|gb|EAR01045.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170]
          Length = 222

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 12/178 (6%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALK 61
             +++R IVFD ETTGLD  NDRI+ IGA+ +         + +++L     K   E+++
Sbjct: 28  NLDEVRFIVFDTETTGLDIVNDRILSIGAISVFSGKLDIGDSLEIYLKQKIFK--AESVE 85

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI  E   +K +       F  +   +N   +AH+A FD+  INA L+R+    L  +
Sbjct: 86  IHGILKEGSIEKHTEEEAIISFLKYI--ENGILVAHHAAFDIAMINAGLRRMGLPKL-KN 142

Query: 122 RIIDTLSIARR----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +++DT  + ++    +  +    L+ L   +     +  +H +  D+ L   + +K++
Sbjct: 143 KVLDTGVLFKKTTLCEDKNKIYSLDYLSGIFK--FRNHDRHTSSGDAFLTGMILLKIL 198


>gi|322372929|ref|ZP_08047465.1| putative CRISPR-associated protein Cas2 [Streptococcus sp. C150]
 gi|321277971|gb|EFX55040.1| putative CRISPR-associated protein Cas2 [Streptococcus sp. C150]
          Length = 301

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 10/164 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIET GLD K + IIEIGAV+     +    F   +     K      KL GI+  
Sbjct: 131 YVVIDIETDGLDEKKNTIIEIGAVKF--NGQQVEEFNSLIKYE-EKLPTAISKLTGISKS 187

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L ++      + SEF  F  +     + +N  FD+ FIN +L +    P+  ++  D +
Sbjct: 188 LLDQEGRDLEEVLSEFLLFIGK--LTLVGYNIHFDIQFINNKLNKFGL-PILINKTHDIM 244

Query: 128 SIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              +  K       L +  K YGI    +  H AL D+ L+  +
Sbjct: 245 RYVKDEKLFLDNYQLQTALKAYGIE--DQVPHRALKDARLIYHL 286


>gi|86131778|ref|ZP_01050375.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
 gi|85817600|gb|EAQ38774.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
          Length = 257

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)

Query: 2   IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  R I  FD+ETTG++   DRI+EI  +++    +    F   + P          
Sbjct: 1   MQLNITRPICFFDLETTGVNVAKDRIVEISILKVFPDGR-EEEFTERINPT-VPIPAVTT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI+D  + DKP+F+    E +D   + +      N +FD+  +  EL R   D    
Sbjct: 59  AVHGISDADVADKPTFAERAKEIYDIIKDSDLAGFNSN-RFDIPLLVEELLRSGIDFDMK 117

Query: 121 SRI-IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +R  ID  +I    H   +  L +  K Y       + H A  D+    +V 
Sbjct: 118 NRNAIDVQNI---FHKMEQRTLVAAYKFY-CDKDLTNAHSASADTWATYEVL 165


>gi|326791343|ref|YP_004309164.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM
           5427]
 gi|326542107|gb|ADZ83966.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM
           5427]
          Length = 837

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 9/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+E+TGL +  D +I+I A+        ++   + L P   K+  E+  +HG +D+
Sbjct: 476 IVVLDVESTGLSTIKDDVIQIAAIRYGKEGVVDQ-LDILLKPT--KSVGESYYVHGFSDD 532

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L K+         +F  F   Q A  + HN  +D+  I + + R   +P+   ++ DTL
Sbjct: 533 LLQKEGMEPKEALKQFVHFI--QGAVLVGHNVNYDLQIIKSMMSRYKLEPIGEYQVYDTL 590

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +A + +P  S + L +L K   I       H A+ D    S+V   ++
Sbjct: 591 DLAYKVYPKLSNHKLETLSKL--IVTETIPTHNAMQDILATSEVLSHLL 637


>gi|319892935|ref|YP_004149810.1| DNA polymerase III polC-type [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162631|gb|ADV06174.1| DNA polymerase III polC-type [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464018|gb|ADX76171.1| conserved hypothetical protein [Staphylococcus pseudintermedius
           ED99]
          Length = 186

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 78/182 (42%), Gaps = 12/182 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+  +    +  D ET   + K   I  +G V+++       TF   + PN    +   +
Sbjct: 1   MMENS---FVALDFETA--NYKRTSICSVGMVKVVANEIV-ETFYTLVNPNDF-FAARNI 53

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGI  + ++  P+F+ ++     F    +   +AHNA FD+  ++A +Q  N     P
Sbjct: 54  EVHGIQAKDVQHSPNFAYVYPYMMQFIG--DLPVVAHNAAFDMSVLHASIQAENLIT-PP 110

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                +  +A+R   + R+ L  +   + +       H AL D+   + +  +++     
Sbjct: 111 MTYFCSYQLAKRTVSARRHGLKHMMSHFNLDF--HGHHDALNDAKACAMITYRLLKHYPS 168

Query: 181 IN 182
           +N
Sbjct: 169 LN 170


>gi|255690064|ref|ZP_05413739.1| exonuclease [Bacteroides finegoldii DSM 17565]
 gi|260624341|gb|EEX47212.1| exonuclease [Bacteroides finegoldii DSM 17565]
          Length = 259

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 80/210 (38%), Gaps = 15/210 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +   DRI+EI  +++  + ++ ++T +  + P        +
Sbjct: 1   MKLNLKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEESKTLR--INPEMH-IPEAS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI D  + D P+F  +        + +  +    N  +FD+  +  E  R   D  
Sbjct: 58  SAVHGIYDADVADCPTFKEVAKSIAR--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVDID 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              R    + +    H   +  L++  K Y    +    H A  D+    +V    +   
Sbjct: 116 MTKRKF--VDVQVIFHKMEQRTLSAAYKFY-CEKNLEDAHTAEADTRATYEVLKAQLDRY 172

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
            ++      N+  F  +      N+    R
Sbjct: 173 DELQ-----NDIAFLADYSSYSKNVDFAGR 197


>gi|254425359|ref|ZP_05039077.1| exonuclease family [Synechococcus sp. PCC 7335]
 gi|196192848|gb|EDX87812.1| exonuclease family [Synechococcus sp. PCC 7335]
          Length = 273

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 74/190 (38%), Gaps = 8/190 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ETTG    N R+IE+  +               + P   K      ++ GIT E +
Sbjct: 33  VVDVETTGALGHNARVIEVSVLHASLADGLEHQESYLINPQ-VKIPEYITRITGITPEMV 91

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTLSI 129
              P    I+ +      E +  + AHN  FD  F+  E +R+       P + + T+ +
Sbjct: 92  YSSPPPEEIWPKCQPLL-EGDRVFTAHNLDFDYSFLRTEYKRLGIRFYKPPLQKLCTVIL 150

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +R          L +L K +   I   + H A  D+     +  K ++   Q N   +T 
Sbjct: 151 SRMLLADLPSRSLPNLIKHFNFDID--TSHRAEADTKACW-LLAKTLLTQIQ-NEDDETL 206

Query: 189 EDRFFKEEKK 198
             RF ++  +
Sbjct: 207 LKRFGQQWIR 216


>gi|312891424|ref|ZP_07750941.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter
           paludis DSM 18603]
 gi|311296118|gb|EFQ73270.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter
           paludis DSM 18603]
          Length = 380

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 9/187 (4%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  R + F D+ETTG +   DRI+EI  ++ L+   T+      + P     S E+ 
Sbjct: 21  MKLNLKRPLAFFDLETTGTNIGVDRIVEISVIK-LNPDGTDDVKTWKINPE-MPISIESS 78

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI +E L D P F +  +E  DF  + +      N +FD+  +  E  R+       
Sbjct: 79  MIHGIYEEHLIDAPVFKTAAAEISDFIADSDLAGYNSN-RFDIPMLMEEFLRVGHPFDIE 137

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            R    + +    H   +  L +  + Y G  I +   H A  D+    +V +  +    
Sbjct: 138 QRHF--IDVQNIFHQMEQRTLRAAYQFYCGKDIIN--AHSAEADTRATMEVLLAQVAKYE 193

Query: 180 QINFGFK 186
            + F  K
Sbjct: 194 GVEFEDK 200


>gi|116618623|ref|YP_818994.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116097470|gb|ABJ62621.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 177

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + +    + I    + D    ++ F   + P    +S     +HG+ 
Sbjct: 1   MNFVAMDFETA--NREKHSAVSIALAIVRDNQVVDK-FYSLIKPETTFSSYN-TAIHGLH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P F  ++     FF  +N   +AHNA FD   +   LQ  + D      ++DT
Sbjct: 57  RQDVADAPKFPEVWQTISPFF-TENKLVVAHNASFDNSILKGTLQYYDIDE-PHYLLLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  +R+  P+   + LN++    GIT+ H   H AL D+   +++ I
Sbjct: 115 VQTSRKLFPNFENHKLNTVAGNLGITLDHH--HNALDDAVAAANILI 159


>gi|254818513|ref|ZP_05223514.1| DNA polymerase III subunit epsilon [Mycobacterium intracellulare
           ATCC 13950]
          Length = 330

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 89/214 (41%), Gaps = 25/214 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RII +  + L    +  ++    L P      P    +HG+T  
Sbjct: 17  WAVIDVETSGFRPGQARIISLAVLGLDADGEVEQSVVSLLNPG---VDPGPTHVHGLTAA 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D+P F+ I  +  D    +    +AHN  FD  F+ AE +  + + L    ++ T+ 
Sbjct: 74  MLEDQPQFADIAPDVIDVL--RGRTLVAHNVAFDYAFLAAEAELADIE-LPVDSVMCTVE 130

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +  +++    H A  D+ +L+ V    +            
Sbjct: 131 LARRLDLGVDNLRLETLAAHW--SVTQERPHDAFDDAMVLTGVLASAL------------ 176

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
              +  ++    +P   + +R  P   R+T +EL
Sbjct: 177 ---KLARDGDVWLPVHPVTRRRWP-NGRVTHDEL 206


>gi|15607062|ref|NP_214444.1| hypothetical protein aq_2108 [Aquifex aeolicus VF5]
 gi|2984321|gb|AAC07843.1| putative protein [Aquifex aeolicus VF5]
          Length = 210

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 87/170 (51%), Gaps = 12/170 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +VFD E T LD K  +++ IGAVE+ +     +++F   L  +  K    A ++HGIT
Sbjct: 36  RFVVFDCEATELDVKKAKLLSIGAVEVKNLEIDLSKSFYEILKSDEIK----AAEIHGIT 91

Query: 67  DEFLKDKPSF-SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            E ++        +  +F  +   + +  + +  KFDV  +     +  + P+   + +D
Sbjct: 92  REDVEKYGKEPKEVIYDFLKYI--KGSVLVGYYVKFDVSLVEKYSIKYFQYPIINYK-LD 148

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             S  +R++ S R  L+ L K  G+ I  R++H AL D+++ + +++K +
Sbjct: 149 LFSFVKREYQSGR-SLDDLMKELGVEI--RARHNALEDAYITALLFLKYV 195


>gi|312131819|ref|YP_003999159.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella
           byssophila DSM 17132]
 gi|311908365|gb|ADQ18806.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella
           byssophila DSM 17132]
          Length = 180

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 12/169 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET    ++ D    +G V  +        +   + P   + +    K+HGI 
Sbjct: 1   MEFVAIDFETA--TAQKDSACAVGVV-WVKGLDIIEEYYTLIQPPNNEYNFYNTKVHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRI 123
               ++ P+F  I+ +       Q  + +AHN+ FD   +   +     D  +   P + 
Sbjct: 58  ARDTENAPTFKDIYPKLKSIL--QGKKIVAHNSAFDKDVLYYTMLSAGLDYSELELPKKW 115

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             T+ I R+K    + +L +  K YGI ++H   H AL D+   + +Y+
Sbjct: 116 DCTVKIYRKKG-LPKVNLAACSKLYGIDLTH---HNALSDAMACAKLYM 160


>gi|312870744|ref|ZP_07730851.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           3008A-a]
 gi|312873738|ref|ZP_07733783.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           2052A-d]
 gi|329919615|ref|ZP_08276604.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners SPIN
           1401G]
 gi|311090736|gb|EFQ49135.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           2052A-d]
 gi|311093756|gb|EFQ52093.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           3008A-a]
 gi|328937420|gb|EGG33842.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners SPIN
           1401G]
          Length = 299

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 12/167 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  N    ++ D+ETTGLD  N+ IIEIGA+++         +   +  N     P A+K
Sbjct: 124 IDTNTKPYVIIDLETTGLDYINNNIIEIGAIKIAKN---IEEYSCIVKQNITL--PNAIK 178

Query: 62  L-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +  GI+D  LK     S    E   F  ++    + +N  FD+ FIN  L+R  +  L  
Sbjct: 179 ILTGISDAELKTGKDESVAIKELCTFIGDK--ALVGYNVNFDIRFINEALKRNGQSQL-T 235

Query: 121 SRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           +++ D +    R K       L+++   YGI I  +  H A+ D  +
Sbjct: 236 NKVYDVMKYVKRDKMFLKNYKLDTVLSEYGINI--KVPHRAIEDVKI 280


>gi|288926239|ref|ZP_06420165.1| exonuclease [Prevotella buccae D17]
 gi|315606363|ref|ZP_07881379.1| DNA polymerase III epsilon chain [Prevotella buccae ATCC 33574]
 gi|288337018|gb|EFC75378.1| exonuclease [Prevotella buccae D17]
 gi|315252054|gb|EFU32027.1| DNA polymerase III epsilon chain [Prevotella buccae ATCC 33574]
          Length = 284

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 12/176 (6%)

Query: 2   IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  +  +VFD+ETTGLD  NDR+I++  +++       R     + P G+  +PE  
Sbjct: 1   MKLNLTKPLVVFDLETTGLDLVNDRVIQLSYIKVCPDGTELRG-NEIINP-GKPIAPEIT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
            L GI+D+ +KD+P+F  +     + F  +  ++   N   FD+  +  E  R   D   
Sbjct: 59  ALTGISDDDVKDRPAFKELAPRLAEEF--KGCDFAGFNSNHFDIPMLAEEFLRAGIDFDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYI 172
              R+ID  +I    H   R +L +  K Y G  +      H A  D+     V +
Sbjct: 117 GKCRLIDAQAI---FHKMERRNLAAAYKFYTGRKMEEDFEAHRADQDTEATYRVLM 169


>gi|255534839|ref|YP_003095210.1| DNA Pol III Epsilon Chain [Flavobacteriaceae bacterium 3519-10]
 gi|255341035|gb|ACU07148.1| DNA Pol III Epsilon Chain [Flavobacteriaceae bacterium 3519-10]
          Length = 254

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 10/173 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K      +FD+ETTG++   DRI+EI  +++  D S+ ++T+   + P       E+
Sbjct: 1   MNLKLYKPLCIFDLETTGVNVAKDRIVEISILKVNPDGSRESKTW--LVNPE-MYIPKES 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-L 118
            ++HGI+D+ +K+ P F  I  +  +     +      N +FDV  +  EL R   D  L
Sbjct: 58  TEIHGISDDDVKNSPKFKEIAPKVMEMITGTDLGGFNSN-RFDVPLLAEELLRAGIDFDL 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              +++D  +I  +  P    +L++    Y       + H A  D     +V 
Sbjct: 117 TKFKLVDVQTIYHKMEP---RNLSAAYNFY-CKKELVNAHSAEADVLATFEVL 165


>gi|315037938|ref|YP_004031506.1| DNA polymerase III alpha chain [Lactobacillus amylovorus GRL 1112]
 gi|312276071|gb|ADQ58711.1| DNA polymerase III alpha chain [Lactobacillus amylovorus GRL 1112]
          Length = 177

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHYPESA--CSLALVMVRNTEIVDR-FYTVINPQ-MPFDARNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K+ P+ + ++ +      +      AHNA+FD   +   L R N        +IDT
Sbjct: 57  AEDVKNAPTMAEVWPKI-KGLYQPGMLVAAHNARFDTNVMRQSLARYNISE-PHYLVIDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L+ ++R  P    + L+++     + + H   H AL DS   + + I
Sbjct: 115 LTTSKRFEPELPNHKLDTVSDALDVELWHH--HNALSDSEACAGILI 159


>gi|91215241|ref|ZP_01252213.1| DNA Pol III Epsilon Chain [Psychroflexus torquis ATCC 700755]
 gi|91186846|gb|EAS73217.1| DNA Pol III Epsilon Chain [Psychroflexus torquis ATCC 700755]
          Length = 256

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 8/172 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K       FD+ETTG++   DRI+EI  +++ + +    ++   + P G     E  
Sbjct: 1   MELKLTRPICFFDLETTGINISKDRIVEISILKVFENNN-KESYTWKVNP-GIPIPKETT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLD 119
            +HGI+DE + ++P F  +  +       +  +   +N  +FD+  +  E+ R   D   
Sbjct: 59  AIHGISDEDVVNEPKFDELAPKINAMI--KGCDLGGYNSNRFDIPLLAEEMLRTGIDF-- 114

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             + I+ + +    H   +  L +  K Y         H A  D++   +V 
Sbjct: 115 DLKKINAVDVQTIFHKKEKRTLEAAYKFY-CDKDLTDAHSAEADTNATYEVL 165


>gi|327537942|gb|EGF24639.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica WH47]
          Length = 355

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 10/159 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET     ++D   ++ AV +      +      + P     SP  +++HGIT
Sbjct: 1   MDFTAIDFETA--TRRSDSACQLAAVRVRGGEIVDSAC-WLIRPRPFVFSPANIQIHGIT 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++++P F  ++ E      +     IAHNA FD+G + A L+  +  P+   +   T
Sbjct: 58  PGMVREEPEFGELWPEIQSTLGDDC--LIAHNASFDLGVLMACLESHDH-PVPDMQYSCT 114

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDS 164
            +IARR  P   R  L  L    GI   H   H AL DS
Sbjct: 115 RAIARRTWPQQPRFGLKPLSDWLGIRFRH---HDALEDS 150


>gi|228471317|ref|ZP_04056120.1| exonuclease [Porphyromonas uenonis 60-3]
 gi|228306894|gb|EEK16002.1| exonuclease [Porphyromonas uenonis 60-3]
          Length = 255

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 13/194 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  + +   + FDIE TGLD  NDRIIE+  ++L+ D  +  RT +    P       E+
Sbjct: 1   MKLQLERPLVFFDIEATGLDITNDRIIELTILKLMPDGERIVRTRRF--NPE-MPIPAES 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-P 117
             +HGITD+ ++D P F +      +  +    +   +N  +FD+  +  E  R   +  
Sbjct: 58  TAIHGITDDDVRDCPPFRACAKSLAELID--GCDLAGYNSQRFDLPMLGEEFLRAGVEVD 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   + ID  +I  +  P     L    + Y     H   HGA  D+    DV +  +  
Sbjct: 116 LLAMQHIDVQTIFHKMEP---RTLEGAVRFY-CHREHIGAHGAEADTIATLDVLMAQLDK 171

Query: 178 -GSQINFGFKTNED 190
            G ++    K   D
Sbjct: 172 YGDELPHSVKELSD 185


>gi|315650464|ref|ZP_07903534.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Eubacterium saburreum DSM 3986]
 gi|315487260|gb|EFU77572.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Eubacterium saburreum DSM 3986]
          Length = 299

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ DIET GLD++ + IIE+GA++ +        FQ  +   G       + L GIT +
Sbjct: 130 FVIVDIETDGLDNEKNVIIEVGAIKSVSG--VLSEFQSLVNYEGT-LPKHIVSLTGITTD 186

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L KD      +  +F DF    + + I +N  FD+ FIN  L +   + L+  R  D +
Sbjct: 187 MLKKDGSDIVVVLKDFVDFLG--DLDIIGYNIGFDIDFINIALLKSGLENLNNKRY-DLM 243

Query: 128 SIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              +  K       L ++ K YG+    +  H AL D+ ++  + +K
Sbjct: 244 RFVKNEKLFLENYKLQTVIKEYGV--GDKVPHRALEDAKMIYKLAMK 288


>gi|32477333|ref|NP_870327.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica SH 1]
 gi|32447884|emb|CAD77402.1| probable DNA polymerase III polC-type [Rhodopirellula baltica SH 1]
          Length = 355

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 10/159 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET     ++D   ++ AV +      +      + P     SP  +++HGIT
Sbjct: 1   MDFTAIDFETA--TRRSDSACQLAAVRVRGGEIVDSAC-WLIRPRPFVFSPANIQIHGIT 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++++P F  ++ E      +     IAHNA FD+G + A L+  +  P+   +   T
Sbjct: 58  PGMVREEPEFGELWPEIQSTLGDDC--LIAHNASFDLGVLMACLESHDH-PVPDMQYSCT 114

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDS 164
            +IARR  P   R  L  L    GI   H   H AL DS
Sbjct: 115 RAIARRTWPQQPRFGLKPLSDWLGIRFRH---HDALEDS 150


>gi|218265111|ref|ZP_03478699.1| hypothetical protein PRABACTJOHN_04409 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221600|gb|EEC94250.1| hypothetical protein PRABACTJOHN_04409 [Parabacteroides johnsonii
           DSM 18315]
          Length = 174

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R    D ET   + K   I  IG + +++ +K   +    + P     +     +HGIT 
Sbjct: 3   RFAAIDFETA--NGKRSSICSIG-IAIIEDNKVIDSIYTLVRPYPNFYTRFTTAVHGITM 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +   D P F  ++SE       Q+   +AHN+ FD G + A  +  +       +   T 
Sbjct: 60  QDTIDSPDFEEVWSEIAG--KLQDIPLVAHNSPFDEGCLRAAHEAYDL-AYPKYQFYCTC 116

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            ++RR +P    + L ++    G  +++   H A+ D++  + +   MM 
Sbjct: 117 RLSRRMYPFLVNHQLQTVAAHCGYDLTYH--HHAMADAYACAHIAATMMR 164


>gi|332521177|ref|ZP_08397635.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola
           5H-3-7-4]
 gi|332043270|gb|EGI79467.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola
           5H-3-7-4]
          Length = 257

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 10/177 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K     FD+ETTG++   DR++EI  +++  + +K ++T+   + P       E 
Sbjct: 1   MQLNLKKPICFFDLETTGINISKDRVVEISILKVFPNGNKESKTW--LVNPE-MPIPAEV 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGITDE + ++P+F+ +  E      + +      N +FD+  +  E+ R N D   
Sbjct: 58  SAIHGITDERVANEPTFAELAKEINVMIKDSDLAGFNSN-RFDIPLLAEEMLRANMDFDM 116

Query: 120 PSRI-IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R+ ID  +I    H   +  L++  K Y    +  + H A  D+    +V    +
Sbjct: 117 NKRVAIDVQTI---FHKMEQRTLSAAYKFY-CDKNLENAHSAEADTLATYEVLKAQL 169


>gi|198274686|ref|ZP_03207218.1| hypothetical protein BACPLE_00842 [Bacteroides plebeius DSM 17135]
 gi|198272133|gb|EDY96402.1| hypothetical protein BACPLE_00842 [Bacteroides plebeius DSM 17135]
          Length = 258

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 14/179 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +   DRI+EI  +++  + ++  +T +  + P        +
Sbjct: 1   MKLNLKNPLVFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTLR--INPEMH-IPETS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP- 117
             +HGI DE + D P+F  +  +     + + A+    N  +FDV  +  E  R   D  
Sbjct: 58  TAIHGIHDEDVADCPTFKEVAKDIAR--DIEGADIAGFNSNRFDVPVLVEEFLRAGIDID 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMM 175
           L   + +D   I  +     +  L++  K Y G  +     H A  D+    +V    +
Sbjct: 116 LTKRKFVDVQVIYHKL---EQRTLSAAYKFYCGKNLED--AHTAEADTRATYEVLKAQL 169


>gi|288923046|ref|ZP_06417199.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
 gi|288345596|gb|EFC79972.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
          Length = 296

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 82/203 (40%), Gaps = 10/203 (4%)

Query: 15  ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP 74
           ETTGL    DR++ +  V           +   L P      P  + +HG+T E L   P
Sbjct: 2   ETTGLWPARDRVLSVAVVLTAPDGAVQGRWSTLLDPGC---DPGPVHIHGLTRERLAGSP 58

Query: 75  SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK- 133
           +F+++  E  +    +    +AHNA FD   +  E  RI +  L     + TL++A R  
Sbjct: 59  TFAAVVDELSELLAGR--VLVAHNAAFDWRMLAGEALRIGR-TLPVEWRLCTLTLASRLG 115

Query: 134 HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFF 193
              +   L +L + +G+  + R  H A  D+ +L+ +  +++   ++             
Sbjct: 116 LELASLRLAALAEHWGV--TQRRAHDAEDDAEVLAALLPRILSRAAEQFLELPLTRCGVE 173

Query: 194 KEEKKTV-PNISLLKRDKPLFTR 215
           ++      P  S   R  P   R
Sbjct: 174 RDGVAVYPPRYSAAGRPPPCGYR 196


>gi|238749568|ref|ZP_04611073.1| Exodeoxyribonuclease 10 [Yersinia rohdei ATCC 43380]
 gi|238712223|gb|EEQ04436.1| Exodeoxyribonuclease 10 [Yersinia rohdei ATCC 43380]
          Length = 219

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 23/172 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET GLD     I+EI +V+++D   +N      + P+ R  S +A+ +H IT
Sbjct: 1   MNLRVIDTETCGLDGG---IVEIASVDVVDGVLSN-PMSDLVSPD-RPISLDAMVIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++  P  +    ++     + +  ++AHNA FD G +          P    + I T
Sbjct: 56  EEMVEGMPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICT 100

Query: 127 LSIARRKHPSSRNDLNSL--CKRYGITI-SHRSKHGALLDSHLLSDVYIKMM 175
           L +AR  +P  ++    L    R  ++I  +   H AL D ++ + +  ++M
Sbjct: 101 LKLARMLYPDIKHSNQYLRYALRLNVSIPENLYPHRALYDCYVTAALLQRIM 152


>gi|160891921|ref|ZP_02072924.1| hypothetical protein BACUNI_04379 [Bacteroides uniformis ATCC 8492]
 gi|270296413|ref|ZP_06202613.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317480391|ref|ZP_07939491.1| exonuclease [Bacteroides sp. 4_1_36]
 gi|156858399|gb|EDO51830.1| hypothetical protein BACUNI_04379 [Bacteroides uniformis ATCC 8492]
 gi|270273817|gb|EFA19679.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316903469|gb|EFV25323.1| exonuclease [Bacteroides sp. 4_1_36]
          Length = 256

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 12/175 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +  +DRI+EI  +++  + ++ ++T +  + P       EA
Sbjct: 1   MKLNLKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNEESKTMR--INPE-MPIPAEA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI D  + D P+F  +     +  + +  +    N  +FD+  +  E  R   D  
Sbjct: 58  SAVHGIYDADIADCPTFKEVARNIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVDID 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYI 172
              R    + +    H   +  L++  K Y G  +     H A  D+    +V +
Sbjct: 116 MSRRKF--VDVQVIFHKMEQRTLSAAYKFYCGKNLED--AHTAEADTRATYEVLM 166


>gi|158335553|ref|YP_001516725.1| exonuclease [Acaryochloris marina MBIC11017]
 gi|158305794|gb|ABW27411.1| exonuclease [Acaryochloris marina MBIC11017]
          Length = 168

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 12/166 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   D + D    IG + + +    +R+    + P  +K   +   +HGIT  
Sbjct: 10  FVAIDFETA--DYQRDSACAIGVIRVENDQIVDRS-HFLIRPPRQK--FQFTYIHGITWS 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +K  P+F+ ++           ++++ AHNA FD   +NA  Q    DP  P   + T+
Sbjct: 65  DVKHHPTFAELWPNLQP--KFAGSDFVAAHNANFDRSVLNACCQAAELDP-MPLPFLCTV 121

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +AR         L ++C+   I + H   H AL D+   + + I 
Sbjct: 122 KLAREVWNIRPTKLPNVCEFLDIPLQH---HQALSDAEACAKIVIA 164


>gi|295395919|ref|ZP_06806104.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971192|gb|EFG47082.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 536

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 100/221 (45%), Gaps = 24/221 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ETTG D     I+    +++     T+ T++  + P G +   EA  +HGIT E+ 
Sbjct: 321 AFDLETTGRDPHTAHIVSAALIDMR----THETWEWLIYPEG-EIPAEASAVHGITTEYA 375

Query: 71  KDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           ++   P   +I      F     A  +AHNA +D+     E  +     L    +IDTL 
Sbjct: 376 RENGMPRAQAIAQIHQVFAERTPACIVAHNAPYDLTIFARECAQYGL-ALPDFFVIDTLV 434

Query: 129 IARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSH-------LLSDVYIKMMVGGS 179
           I +   P  +    L+++C R+G+++ +   H A  D+         ++D + ++    +
Sbjct: 435 IDKHAEPFRKGPRTLDAVCARWGVSLDN--AHDATADARASGLVALAIADAFPELAQLSA 492

Query: 180 QINFG----FKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTR 215
           +   G    +K ++    +E  +T  N  ++++ + P  TR
Sbjct: 493 EQIHGAQKEWKRDQAARLQEYLRTRRNPNAVVEHEWPFLTR 533


>gi|325956410|ref|YP_004291822.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC]
 gi|325332975|gb|ADZ06883.1| DNA polymerase III alpha chain [Lactobacillus acidophilus 30SC]
 gi|327183226|gb|AEA31673.1| DNA polymerase III subunit alpha [Lactobacillus amylovorus GRL
           1118]
          Length = 177

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHYPESA--CSLALVMVRNTEIVDR-FYTVINPQ-MPFDARNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K+ P+ + ++ +      +      AHNA+FD   +   L R N        +IDT
Sbjct: 57  AEDVKNAPTMAEVWPKI-KGLYQPGMLVAAHNARFDTNVMRQSLARYNISE-PHYLVIDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L+ +++  P    + L+++     + + H   H AL DS   + + I
Sbjct: 115 LATSKKFEPELPNHKLDTVSDALDVELWHH--HNALSDSEACAGILI 159


>gi|146302714|ref|YP_001197305.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
 gi|146157132|gb|ABQ07986.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
          Length = 256

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 88/193 (45%), Gaps = 12/193 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K       FD+ETTG+D   DRI+EI   ++  + +K ++T+   + P      P+ 
Sbjct: 1   MELKLNKPICFFDLETTGIDIGKDRIVEISIFKVFPNGNKESKTW--LVNPTI-PIPPQT 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGITDE + ++P+F+ +     +    ++++    N  +FD+  +  EL R   D  
Sbjct: 58  TAVHGITDEKVANEPTFAELAPLVHNMI--KDSDLAGFNSDRFDIPLLAEELLRAGVDFD 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +++  ++ +    H      L++  K Y G ++ +   H A  D+    ++    +  
Sbjct: 116 MKNKV--SVDVQTIFHKMEERTLSAALKFYCGKSLDN--AHSAEADTMATYEILKAQLDR 171

Query: 178 GSQINFGFKTNED 190
             ++    K+  +
Sbjct: 172 YPELENDMKSLSE 184


>gi|86134050|ref|ZP_01052632.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
 gi|85820913|gb|EAQ42060.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
          Length = 275

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 15/194 (7%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           +  N  + IVF D+ETTG++   DRI+EI  +++  + +K ++T+   + P   +    A
Sbjct: 1   MNLNLTKPIVFFDLETTGVNIATDRIVEISILKVFPNGNKESKTW--LVNPEI-EIPQGA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGIT+E +  +P+F  +  +  +       +    N  +FD+  +  EL R   D  
Sbjct: 58  TDVHGITNEKVVTEPTFKELAGKVSEMIA--GCDLAGFNSNRFDIPLLAEELMRAGIDFD 115

Query: 119 DPSRI-IDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMV 176
             +R  ID   I    H   +  L++  + Y G  +     HGA  D++   ++ +  + 
Sbjct: 116 MQNRKAIDVQVI---FHKKEQRTLSAGYQFYCGKELEG--AHGAEADTNATYEILLAQVE 170

Query: 177 GGSQINFGFKTNED 190
               I        +
Sbjct: 171 KYDDIGNSVDALSE 184


>gi|116671305|ref|YP_832238.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24]
 gi|116611414|gb|ABK04138.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24]
          Length = 254

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 99/228 (43%), Gaps = 21/228 (9%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +K  +  FD+ETTG +S+  RI+   +V ++D   +  T   +L   G +   EA ++H
Sbjct: 22  WDKRPRAAFDLETTGRNSRAARIVT-ASVTVVDADGSVITEHEWLADPGIEIPAEASEVH 80

Query: 64  GITDE--FLKDKPSFSSI---FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           G+T E   L+ +P+ + +    +       +     IA NA +D   + AE  R     L
Sbjct: 81  GVTTERARLEGRPA-AEVTRELASVLQGLFDDGIPVIAFNASYDFTVLAAESARYGIPQL 139

Query: 119 DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY----- 171
           +   ++D   + ++  +    +  L +LC+ Y + + +   H +  D+     +      
Sbjct: 140 NRFPVLDPYIMNKQVDRFRKGKRTLTALCEEYKVNLDN--AHTSAADALATLRMLDAMAG 197

Query: 172 ----IKMMVGG-SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214
               ++M  G   Q+  G+  ++   F+   +     ++++ + P+  
Sbjct: 198 KFPKLRMAAGQLHQLQVGWAASQAADFQTYLRKTKPAAVIEGEWPVLP 245


>gi|189460117|ref|ZP_03008902.1| hypothetical protein BACCOP_00753 [Bacteroides coprocola DSM 17136]
 gi|189433159|gb|EDV02144.1| hypothetical protein BACCOP_00753 [Bacteroides coprocola DSM 17136]
          Length = 258

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 14/179 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +   DRI+EI  +++  + ++ ++T +  + P        +
Sbjct: 1   MKLNLKNPLVFFDLETTGTNINTDRIVEICYLKVYPNGNEESKTMR--VNPEMH-IPEAS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP- 117
             +HGI DE + D P+F  I  +     + + A+    N  +FDV  +  E  R   D  
Sbjct: 58  TAIHGIHDEDVADCPTFKEIAKDIAR--DLEGADIAGFNSNRFDVPVLVEEFLRAGIDID 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMM 175
           L   + ID   I  +     +  L++  K Y G  +     H A  D+    +V    +
Sbjct: 116 LTKRKFIDVQVIYHKL---EQRTLSAAYKFYCGKNLED--AHTAEADTRATYEVLKAQL 169


>gi|309789846|ref|ZP_07684425.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
 gi|308228150|gb|EFO81799.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
          Length = 230

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 22/187 (11%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCP-NGRKNSPEAL 60
              ++   V DIET+GL+ K D ++ IG VE+ +     NR +   + P  G +    ++
Sbjct: 28  HWREVGYSVLDIETSGLNHKRDALLAIGLVEIEEGRIHLNRHWYTLVRPPEGLEVDASSI 87

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLD 119
           ++HGIT   L+D P    +  E       +    + H A+ DV F+N  ++ R     + 
Sbjct: 88  RIHGITRAELEDAPLADVVLPELLARLAGR--VMVVHVAQVDVSFLNQAMRTRWGAKLVG 145

Query: 120 PSRIIDTLSIARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           P  IIDT  IA   H             P     L +L  R+G+       H AL D+  
Sbjct: 146 P--IIDTARIAMSLHETAKILGSVQPDMPMPAIQLRALATRFGLPSYGE--HNALNDALT 201

Query: 167 LSDVYIK 173
            + +++ 
Sbjct: 202 TAQLFLA 208


>gi|269837944|ref|YP_003320172.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787207|gb|ACZ39350.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
          Length = 197

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 73/190 (38%), Gaps = 19/190 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+R+     +  D ETTGLD +   I+EI  V+       +      + P  R   PE  
Sbjct: 18  MLRRRD--VLFLDTETTGLDGQ-AEIVEIAVVDAQGTVLLD----TLVRP-LRPIPPEVQ 69

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGITD  +   P +  + +E    F E+    + +NA FD   I    Q+    P   
Sbjct: 70  AIHGITDRMVAGAPRWPEVHAELVRLFRERPRAVV-YNAAFDRRVIAQTAQQHCLPPPTA 128

Query: 121 SRIIDTLSIARR---KHPSS----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                 L  A     +HP +     + L+      GI    R  H AL D+ +   V   
Sbjct: 129 EWHCAMLRYAAYAGERHPVTGKYRWHRLDRAAAALGIP---RPTHRALGDALVCRGVVAA 185

Query: 174 MMVGGSQINF 183
           M   G ++  
Sbjct: 186 MAGLGGRLGH 195


>gi|281424378|ref|ZP_06255291.1| exonuclease [Prevotella oris F0302]
 gi|281401647|gb|EFB32478.1| exonuclease [Prevotella oris F0302]
          Length = 286

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 11/176 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    K   +VFD+ETTGLD  NDRII++  +++       R     + P G+       
Sbjct: 1   MKLNLKKPLVVFDLETTGLDIVNDRIIQLSFIKVCPDGTEERGDH-LINP-GKHIPDMVS 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
            L GI DE +KD PSF  + +   +    +  ++   N  +FDV  +  E  R   D   
Sbjct: 59  ALTGIDDEKVKDAPSFKQLSATLAE--KFKGCDFAGFNSNRFDVPMLAEEFLRAGIDFDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYI 172
              R+ID  +I    H   + +L +  + Y G  +      H A  D+     V +
Sbjct: 117 SKCRLIDAQTI---FHKMEKRNLAAAYEFYCGRKMEEDFEAHRADQDTEATYRVLL 169


>gi|56965684|ref|YP_177418.1| hypothetical protein ABC3926 [Bacillus clausii KSM-K16]
 gi|56911930|dbj|BAD66457.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 238

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           I   ++  +VFD+ET+G    + D I+ IGAV++      N  F   + P  +    E L
Sbjct: 47  IPFAQLPIVVFDLETSGFHPDQGDGILSIGAVKVTGNEVHNDHFYETIKPK-QPPCEEVL 105

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLD 119
           +L G++ + L   P  + +   F+DF     A  +AH+A  +  F+ +A  Q + +    
Sbjct: 106 RLTGLSLQELDHSPPINDVLLRFYDFAGA--ATLVAHHAAHERKFMRHATWQELGRTF-- 161

Query: 120 PSRIIDT--LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             R+IDT  L+     H   +  L+  C  YGI I+ R  H AL D+ + + ++ K +  
Sbjct: 162 THRLIDTTFLTNITAAHQQFQ-TLDEWCDAYGIAINQR--HHALADARMTAKLWAKHITL 218

Query: 178 GSQINF 183
                +
Sbjct: 219 AEHAGY 224


>gi|224023848|ref|ZP_03642214.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM
           18228]
 gi|224017070|gb|EEF75082.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM
           18228]
          Length = 258

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 14/179 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +   DRI+EI  +++  + ++ ++T +  + P G      +
Sbjct: 1   MKLNLKNPLVFFDLETTGTNINTDRIVEICYLKVYPNGNEESKTMR--INP-GMHIPEAS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP- 117
             +HGI D  + D P+F  +  +     + + A+    N  +FDV  +  E  R   D  
Sbjct: 58  SAIHGIYDADVADCPTFKEVAKDIAR--DLEGADIAGFNSNRFDVPVLVEEFLRAGIDID 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMM 175
           L   + ID   I  +     +  L++  K Y G  +     H A  D+    +V    +
Sbjct: 116 LTRRKFIDVQVIYHKL---EQRTLSAAYKFYCGKNLED--AHTAEADTRATYEVLKAQL 169


>gi|311746871|ref|ZP_07720656.1| exonuclease [Algoriphagus sp. PR1]
 gi|126578557|gb|EAZ82721.1| exonuclease [Algoriphagus sp. PR1]
          Length = 267

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 12/175 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K     FD+E TG +   DRI+EI  V+  +D  +    +   + P G     EA
Sbjct: 1   MKLNLKNSIAFFDLEATGTNISTDRIVEISIVKLKIDGGQ--EIYTRRVNP-GVPIPLEA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL 118
             +HG+ D+ LKD+PSF  I  E + F     ++    N  K+D+  +  E  R   +  
Sbjct: 58  SLIHGLYDKDLKDEPSFKDIAKEVYQFIG--GSDLSGFNVLKYDIPLLVEEFLRAGIEFE 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYI 172
              R +  L   +  H   + +L +  K Y G T+ +   H A  D+    DV+I
Sbjct: 116 LDKRNL--LDAQKIFHMMEKRNLTAAYKFYCGKTLEN--AHSAEADTLATMDVFI 166


>gi|297205524|ref|ZP_06922920.1| DNA polymerase III [Lactobacillus jensenii JV-V16]
 gi|297150102|gb|EFH30399.1| DNA polymerase III [Lactobacillus jensenii JV-V16]
          Length = 317

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 70/171 (40%), Gaps = 12/171 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67
             + DIETTGL    DRI E+  +++ +  K    +   +  P   K      KL+GI +
Sbjct: 35  YTMLDIETTGLSLYRDRITELAGIKVRNG-KVVAEYSQLVKYPKDNKVPRFITKLNGIDE 93

Query: 68  EF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L +        +EF +F        + +N  FD+ FI    ++     L  +  ID 
Sbjct: 94  ALILANGMPVKEAITEFRNFIG--GDVIVGYNVNFDLNFIYDLWEKFQLKKLSNN-YIDV 150

Query: 127 LSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGAL---LDSHLLSDVYIK 173
           L  +R      S N L    +R GI  S    H  L   LD+  + D+Y K
Sbjct: 151 LHFSRVFFKKESHNRLLDCIRRLGI--SESEAHRGLKDSLDTKAVFDIYRK 199


>gi|119962878|ref|YP_948455.1| DNA polymerase III subunit epsilon [Arthrobacter aurescens TC1]
 gi|119949737|gb|ABM08648.1| putative DNA polymerase III epsilon subunit [Arthrobacter aurescens
           TC1]
          Length = 236

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 93/232 (40%), Gaps = 23/232 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPE 58
           M   N + +  FD+ETTG +S++ RI+   ++ ++D            +L   G +   E
Sbjct: 1   MSSWNTLSRAAFDLETTGKNSRSARIVT-ASITVVDAHGGLIAE--HEWLADPGVEIPLE 57

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSE---FWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           A ++HG+T E    +    + +  E         +     IA NA +D   + AE  R  
Sbjct: 58  ASEVHGVTTEKARAEGRPAAEVTREVAGVLQGLFDDGTPVIAFNASYDFTVLAAESARYG 117

Query: 115 KDPLDPSRIIDTLSIARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              L    ++D   + ++   +   +  L +LC+ YG+ +++   H +  D+     V  
Sbjct: 118 VPQLSRFPVLDPYVMNKQMDRYRKGKRTLTALCEEYGVDLTN--AHTSAADALATLRVLD 175

Query: 173 KMMVGG----------SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214
            M               Q+   +  ++   F++  +     ++++ + P+  
Sbjct: 176 AMAGKFPKLQMPASTLHQLQVDWAASQAADFQQYLRRSKPTAVIEGEWPVLP 227


>gi|299140892|ref|ZP_07034030.1| exonuclease [Prevotella oris C735]
 gi|298577858|gb|EFI49726.1| exonuclease [Prevotella oris C735]
          Length = 286

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 11/176 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    K   +VFD+ETTGLD  NDRII++  +++       R     + P G+       
Sbjct: 1   MKLNLKKPLVVFDLETTGLDIVNDRIIQLSFIKVCPDGTEERGDH-LINP-GKHIPDMVS 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
            L GI DE +KD PSF  + +   +    +  ++   N  +FDV  +  E  R   D   
Sbjct: 59  DLTGIDDEKVKDAPSFKQLSATLAE--KFKGCDFAGFNSNRFDVPMLAEEFLRAGIDFDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYI 172
              R+ID  +I    H   + +L +  + Y G  +      H A  D+     V +
Sbjct: 117 SKCRLIDAQTI---FHKMEKRNLAAAYEFYCGRKMDEDFEAHRADQDTEATYRVLL 169


>gi|303236025|ref|ZP_07322628.1| exonuclease [Prevotella disiens FB035-09AN]
 gi|302483898|gb|EFL46890.1| exonuclease [Prevotella disiens FB035-09AN]
          Length = 284

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 13/177 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+       IVFD+ETTGLD   DRII+I  +++       R   +++ P  ++   E +
Sbjct: 1   MLLNLTKPLIVFDLETTGLDLVKDRIIQISYIKVSPNGDEERE-NLYINPE-KEIPKEVV 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWD-FFNEQNAEWIAHN-AKFDVGFINAELQRINKDP- 117
           +L GI+D  +   P+F     E  D F      ++   N  +FDV  +  E  R   D  
Sbjct: 59  ELTGISDADVASAPTFKQKAKELADKFI---GCDFAGFNSNRFDVPMLAEEFLRAGVDFD 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYI 172
               R+ID  +I    H   R +L +  + Y G  +    + H A  D+     V  
Sbjct: 116 FSKCRLIDAQNI---FHKMERRNLAAAYEFYCGRKMEEDFTAHKADEDTEATWRVLQ 169


>gi|71755261|ref|XP_828545.1| mitochondrial DNA polymerase I protein B [Trypanosoma brucei
           TREU927]
 gi|70833931|gb|EAN79433.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
           brucei]
 gi|261334421|emb|CBH17415.1| conserved hypothetical protein, conserved [Trypanosoma brucei
           gambiense DAL972]
          Length = 1404

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 79/197 (40%), Gaps = 33/197 (16%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+ K R +VFDIE+TGL++  D IIE+ A + ++ +    +F   + P  R   P++  +
Sbjct: 757 RRRKYRLVVFDIESTGLNTATDAIIEVAAFDPVEGT----SFSSLVNPQ-RPIPPQSTAI 811

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFN--------EQNAEWIAHN-AKFDVGFINAELQRI 113
           H ITD  ++  P  S +   F  +          ++    I HN    D   +    +  
Sbjct: 812 HHITDSMVQGAPRLSEVTQAFARYLRLSEGQRDEDEVTILIGHNVFALDEPLLRRAFRSE 871

Query: 114 NKDP--LDPSRIIDTLSIARRKHPSSRN----------------DLNSLCKRYGITISHR 155
           + D   L     +  L   +++   S+                  L+SL +   +  +  
Sbjct: 872 SVDTENLLFCDSLTILKGLKQELQGSKKDSKFDRGVLDILTNSLRLSSLVEGLRVE-ADG 930

Query: 156 SKHGALLDSHLLSDVYI 172
             H A  D+ +L  V +
Sbjct: 931 ELHRADTDAKMLWFVLV 947


>gi|268679463|ref|YP_003303894.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617494|gb|ACZ11859.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 203

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 11/171 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD ETTGL+ K D I+ IGAV++       +  F++F+ P   + +  ++K+H I + 
Sbjct: 32  VVFDTETTGLNPKKDEILSIGAVKVRGNKILMSEKFELFVKP-RFEVNETSIKIHQIRNI 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTL 127
            +++  S      +F  F   +    + +  +FDV  IN  L+  +N    +P   +  L
Sbjct: 91  DVQNALSPREAIEQFLHFIGAR--PLVGYYLEFDVAMINKYLKAWLNIYLPNPQIELSGL 148

Query: 128 SIAR--RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +  ++ P    DL  + + K  G+ I  +  H AL D+ + + +Y+K+
Sbjct: 149 YHDKKIKRIPDGVIDLRFDVMMKELGLPIFGK--HDALNDAMMSAMMYVKL 197


>gi|330720110|gb|EGG98518.1| Ribonuclease T [gamma proteobacterium IMCC2047]
          Length = 187

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 17/183 (9%)

Query: 15  ETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHGITD-E 68
           ET G ++  D ++EI AV +    +       T    + P  G      A+K  GI    
Sbjct: 2   ETGGFNAATDALLEIAAVPIQMDEQGLLYPGETLSFHVKPFEGANIEEAAIKFTGIDPYH 61

Query: 69  FLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRI--NKDPLD 119
            L+   +        +            + A  + HNA FD GF+NA  +R    ++P  
Sbjct: 62  PLRIANTEQEAMDGIFRTVRKAVKASGCKRAILVGHNAHFDHGFVNAAAERCDIKRNPFH 121

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           P    DT+S+A       +  L   C+   I  S+   H A  D+   ++++  +     
Sbjct: 122 PFSNFDTVSLAGLA--VGQTVLARACEVAEIEFSNEEAHSARYDTEKTAELFCFIANRWR 179

Query: 180 QIN 182
           ++ 
Sbjct: 180 ELG 182


>gi|146080581|ref|XP_001464035.1| mitochondrial DNA polymerase I protein B [Leishmania infantum
           JPCM5]
 gi|134068125|emb|CAM66410.1| putative mitochondrial DNA polymerase I protein B [Leishmania
           infantum JPCM5]
          Length = 1430

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 74/203 (36%), Gaps = 35/203 (17%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +    R + FDIETTGL+   D I+E+   + ++ S    TF   + P  R  +P  + +
Sbjct: 759 KLKTYRIVFFDIETTGLNPSTDAIVEVAMFDPIENS----TFHTLVNPQ-RSITPRTVGI 813

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNA--------EWIAHN-AKFDVGFINAELQRI 113
           H IT+  ++D P+   +      +     A          + HN    D   +   L+  
Sbjct: 814 HHITNAMVRDAPTVDVVAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPMLRRALECH 873

Query: 114 NKD-PLDPSRIIDTLS-------IARRKHPSSRND------------LNSLCKRYGITIS 153
             +  LD     D+L+         R +  + R +            L+ L     +   
Sbjct: 874 APECQLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALASSLRLSRLITALNVRPE 933

Query: 154 HRSKHGALLDSHLLSDVYIKMMV 176
               H A  D+  L  V + ++ 
Sbjct: 934 G-DLHRADTDTKALWYVLVNILG 955


>gi|322804522|emb|CBZ02073.1| putative DNA polymerase III epsilon chain [Clostridium botulinum
           H04402 065]
          Length = 309

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +KD+  F  I+ +  D+FN  N   IAHNA FD+  + + L+  N   +     I T
Sbjct: 58  PHMVKDELEFDKIWGKIKDYFN--NNLVIAHNASFDMSVLKSTLKLYNIK-MPSFEYICT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G    H   H AL D+   S++ I +
Sbjct: 115 MKLSKNFYSNIDNARLNTVNNFLGYKFKH---HDALADAMACSNILINI 160


>gi|237710744|ref|ZP_04541225.1| DNA Pol III epsilon chain [Bacteroides sp. 9_1_42FAA]
 gi|229455466|gb|EEO61187.1| DNA Pol III epsilon chain [Bacteroides sp. 9_1_42FAA]
          Length = 260

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 12/174 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    K   + FD+ETTG +   DRI+EI  +++   S    T  + + P       ++ 
Sbjct: 3   MKLNLKNPIVFFDLETTGTNINTDRIVEICYLKVYPNSN-EETKTMRINPEMH-IPEQSS 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLD 119
            +HGI D  + D P+F  +  E     + +  +    N  +FD+  +  E  R   D   
Sbjct: 61  AIHGIYDADVADCPTFKEVAKEIAR--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDM 118

Query: 120 PSR-IIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVY 171
             R  ID   I  +     +  L++  K Y G  +     H A  D+    +V 
Sbjct: 119 MKRKFIDVQVIYHKL---EQRTLSAAYKFYCGKNLED--AHTAEADTRATYEVL 167


>gi|21929661|gb|AAM81963.1|AF445377_1 DNA polymerase I-like protein B [Trypanosoma brucei]
          Length = 1404

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 79/197 (40%), Gaps = 33/197 (16%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R+ K R +VFDIE+TGL++  D IIE+ A + ++ +    +F   + P  R   P++  +
Sbjct: 757 RRRKYRLVVFDIESTGLNTATDAIIEVAAFDPVEGT----SFSSLVNPQ-RPIPPQSTAI 811

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFN--------EQNAEWIAHN-AKFDVGFINAELQRI 113
           H ITD  ++  P  S +   F  +          ++    I HN    D   +    +  
Sbjct: 812 HHITDSMVQGAPRLSEVTQAFARYLRLSEGQRDEDEVTILIGHNVFALDEPLLRRAFRSE 871

Query: 114 NKDP--LDPSRIIDTLSIARRKHPSSRN----------------DLNSLCKRYGITISHR 155
           + D   L     +  L   +++   S+                  L+SL +   +  +  
Sbjct: 872 SVDTENLLFCDSLTILKGLKQELQGSKKDSKFDRGVLDILTNSLRLSSLVEGLRVE-ADG 930

Query: 156 SKHGALLDSHLLSDVYI 172
             H A  D+ +L  V +
Sbjct: 931 ELHRADTDAKMLWFVLV 947


>gi|218130099|ref|ZP_03458903.1| hypothetical protein BACEGG_01686 [Bacteroides eggerthii DSM 20697]
 gi|317476592|ref|ZP_07935837.1| exonuclease [Bacteroides eggerthii 1_2_48FAA]
 gi|217987603|gb|EEC53931.1| hypothetical protein BACEGG_01686 [Bacteroides eggerthii DSM 20697]
 gi|316907188|gb|EFV28897.1| exonuclease [Bacteroides eggerthii 1_2_48FAA]
          Length = 256

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 12/175 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +  +DRI+EI  +++  + ++ ++T +  + P       EA
Sbjct: 1   MKLNLKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNEESKTMR--INPEMH-IPAEA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI DE + D P+F  +     +  + +  +    N  +FD+  +  E  R + D  
Sbjct: 58  SAVHGIYDEDVADCPTFKEVARSIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRADVDID 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYI 172
              R    + +    H   +  L++  K Y G  +     H A  D+    +V +
Sbjct: 116 MSRRKF--VDVQVIFHKMEQRTLSAAYKFYCGKNLED--AHTAEADTRATYEVLM 166


>gi|295133095|ref|YP_003583771.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
 gi|294981110|gb|ADF51575.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
          Length = 257

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 12/174 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K       FD+ETTG +   DRI+EI  +++  + +K +RT+   + P   +   E 
Sbjct: 1   MELKLTKPICFFDLETTGTNLAKDRIVEIAILKVYPNGNKESRTW--LVNPE-MEIPKEV 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
           + +HGI++E + ++P+F  +  + +D    +  +   +N  +FD+  +  EL R + D  
Sbjct: 58  IAIHGISNEKVANEPTFKELSKQIYDMI--KGCDLGGYNSNRFDIPLLAEELLRADIDF- 114

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVY 171
              + +  + +    H   +  L +  K Y G  +     H A  D+    +V 
Sbjct: 115 -DMKNMMAVDVQTIFHKKEQRTLAAAFKFYCGKELID--AHSAAADTEATYEVL 165


>gi|229138336|ref|ZP_04266930.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST26]
 gi|228645101|gb|EEL01339.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST26]
          Length = 99

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 6/100 (6%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +V D+ETTG   K+  D+I +I AV + D  +    F  F+ P  R+  P   +L GI
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            +  +K  P F  +     +    Q A ++AHN  FD  F
Sbjct: 62  DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNF 99


>gi|325973260|ref|YP_004250324.1| DNA polymerase III PolC [Mycoplasma suis str. Illinois]
 gi|323651862|gb|ADX97944.1| DNA polymerase III, PolC [Mycoplasma suis str. Illinois]
          Length = 1438

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 16/169 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           +FD+ETTGL+   D IIEI  ++    +  +  +   +  N +K   E + L  IT+E L
Sbjct: 396 IFDLETTGLNPIFDEIIEIFVLKYSSGTVID-HYYSLIRCN-KKLRKEIINLTHITEEKL 453

Query: 71  ----KDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIID 125
               +DK +   +  E  DF +      IAHN   FD  F+N+EL++   +PLD + I+D
Sbjct: 454 NMSGRDKLT---VLQEVRDFVS--GTVLIAHNGIDFDFPFLNSELRKSGLEPLD-NPILD 507

Query: 126 TLSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           TL + +      +     L ++ K+  I +  +  H +  D+  L+ ++
Sbjct: 508 TLRLCKALEEGKKSKSYSLFAIAKKMSINVVEQELHNSEYDTRCLAKMW 556


>gi|156368138|ref|XP_001627553.1| predicted protein [Nematostella vectensis]
 gi|156214466|gb|EDO35453.1| predicted protein [Nematostella vectensis]
          Length = 275

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 84/219 (38%), Gaps = 47/219 (21%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPE 58
           MI +N     V D+ETTGL   NDRI++I  V++        ++  ++ P  +  K    
Sbjct: 20  MIPRNA-TYCVLDVETTGLSKLNDRIVQIACVKVKPTGD-KESWMSYINPCMDREKQLAG 77

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINK-- 115
             K+H ++ + L  KP FS I    W F     AE  +A+N  +D   +  E +RI++  
Sbjct: 78  GYKVHHLSPDMLLKKPKFSEIVESLWRFL--CGAEYLVAYNCLYDWDMLCQEFRRIDRTE 135

Query: 116 --------DPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRS---------- 156
                   + +     ID L ++    PS S + L ++ K   I    R+          
Sbjct: 136 SGYTKLEEEFVKKFTWIDVLRLSISSFPSLSNHKLETVAKHLKIEYMSRTTYTYKSSFNS 195

Query: 157 -------------------KHGALLDSHLLSDVYIKMMV 176
                               H A+ D    + V  + M 
Sbjct: 196 GEVEAVSVTEQSCDPWQGGAHDAMCDVLTTNSVLQEAMG 234


>gi|329955851|ref|ZP_08296654.1| exonuclease [Bacteroides clarus YIT 12056]
 gi|328525231|gb|EGF52281.1| exonuclease [Bacteroides clarus YIT 12056]
          Length = 256

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 12/175 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +  +DRI+EI  +++  + ++  +T +  + P       EA
Sbjct: 1   MKLNLKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNEETKTMR--INPEMH-IPAEA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI DE + D P+F  +     +  + +  +    N  +FD+  +  E  R + D  
Sbjct: 58  SAVHGIYDEDVADCPTFKEVARGIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRADVDID 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYI 172
              R    + +    H   +  L++  K Y G  +     H A  D+    +V +
Sbjct: 116 MSRRKF--VDVQVIFHKMEQRTLSAAYKFYCGKNLED--AHTAEADTRATYEVLM 166


>gi|298209279|ref|YP_003717458.1| putative DNA polymerase III epsilon chain [Croceibacter atlanticus
           HTCC2559]
 gi|83849206|gb|EAP87075.1| putative DNA polymerase III epsilon chain [Croceibacter atlanticus
           HTCC2559]
          Length = 258

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 12/178 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K       FD+ETTG++   D+I+EI  +++  + +K ++T+   + P  R    E 
Sbjct: 1   MELKLTKPICFFDLETTGVNVAKDKIVEISILKVFPNGNKESKTW--LVNPE-RPIPAET 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGITDE + ++P+F  + S  ++    +  +    N  +FD+  +  EL R + D  
Sbjct: 58  TAVHGITDEKVANEPTFKELSSSIYEMI--KGCDLGGFNSNRFDIPLLAEELLRADIDFD 115

Query: 119 DPSRI-IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +   +D  +I    H   +  L +  K Y         H A  D+    +V    +
Sbjct: 116 MKNSSAVDVQTI---FHKMEQRTLVAAYKFY-CDKDLTDAHSAAADTEATYEVLKAQL 169


>gi|325989695|ref|YP_004249394.1| DNA polymerase III polC-type [Mycoplasma suis KI3806]
 gi|323574780|emb|CBZ40440.1| DNA polymerase III, polC-type [Mycoplasma suis]
          Length = 1438

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 16/169 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           +FD+ETTGL+   D IIEI  ++    +  +  +   +  N +K   E + L  IT+E L
Sbjct: 396 IFDLETTGLNPIFDEIIEIFVLKYSSGTVID-HYYSLIRCN-KKLRKEIINLTHITEEKL 453

Query: 71  ----KDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIID 125
               +DK +   +  E  DF +      IAHN   FD  F+N+EL++   +PLD + I+D
Sbjct: 454 NMSGRDKLT---VLQEVRDFVS--GTVLIAHNGIDFDFPFLNSELRKSGLEPLD-NPILD 507

Query: 126 TLSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           TL + +      +     L ++ K+  I +  +  H +  D+  L+ ++
Sbjct: 508 TLRLCKALEEGKKSKSYSLFAIAKKMSINVVEQELHNSEYDTRCLAKMW 556


>gi|322497434|emb|CBZ32508.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1430

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 74/203 (36%), Gaps = 35/203 (17%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +    R + FDIETTGL+   D I+E+   + ++ S    TF   + P  R  +P  + +
Sbjct: 759 KLKTYRIVFFDIETTGLNPSTDAIVEVAMFDPIENS----TFHTLVNPQ-RSITPRTVGI 813

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNA--------EWIAHN-AKFDVGFINAELQRI 113
           H IT+  ++D P+   +      +     A          + HN    D   +   L+  
Sbjct: 814 HHITNAMVRDAPTVDVVAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPMLRRALECH 873

Query: 114 NKD-PLDPSRIIDTLS-------IARRKHPSSRND------------LNSLCKRYGITIS 153
             +  LD     D+L+         R +  + R +            L+ L     +   
Sbjct: 874 APECQLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALASSLRLSRLITALNVRPE 933

Query: 154 HRSKHGALLDSHLLSDVYIKMMV 176
               H A  D+  L  V + ++ 
Sbjct: 934 G-DLHRADTDTKALWYVLVNILG 955


>gi|238853316|ref|ZP_04643700.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 202-4]
 gi|300362992|ref|ZP_07059162.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           JV-V03]
 gi|238834110|gb|EEQ26363.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 202-4]
 gi|300353042|gb|EFJ68920.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           JV-V03]
          Length = 320

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67
             + D+ETTGL    DRI E+G +++  + +   TF   +  P+  K      KL+GI +
Sbjct: 33  YTLIDVETTGLSPYRDRITEMGGLKVR-HGEVVATFSELVKFPDNNKVPAFITKLNGIDE 91

Query: 68  EFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             +++K         ++ +F        + +N  FD+ F+    ++ +   L+ +  +D 
Sbjct: 92  AAIEEKGLPVQEAIKKYREFIGSD--PIVGYNVNFDLNFVYDLAEKYHLTVLN-NDYVDV 148

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +AR  +P  R++ L     R  I  +   +H  L D      V+
Sbjct: 149 YRLARSFYPQERHNRLLDCMHRMNI--AENQEHRGLDDCLDTKKVF 192


>gi|170746460|ref|YP_001752720.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
 gi|170652982|gb|ACB22037.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
          Length = 289

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 84/222 (37%), Gaps = 16/222 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + + D    +G   + D     R     + P   + +P  +++HGI 
Sbjct: 1   MTVLALDFETA--NERRDSACAVGLAWIADGRVVRRESH-LIRPPEMRFAPGNIRVHGIL 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRIID 125
              + DKP F+++      +  +     I AHNA FD+G + A L R    P+     + 
Sbjct: 58  PADVADKPDFAAVM---APYLGDLARGLILAHNASFDIGVLRAGLTRAGL-PVPDLAYLC 113

Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           T+ ++RR  P+     L  + +R GI   H   H A  D++  +++ +  M   +  +  
Sbjct: 114 TVQVSRRVFPAPEGCGLGKVARRLGIRFEH---HDAGEDAYACAEIALAAMRERAVADMH 170

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK---EELDE 223
                           P +   +    +  R      EE   
Sbjct: 171 ALAAALGLPVTRAVGGPAVPR-RAPGAISGRALAAFPEEPAA 211


>gi|188588313|ref|YP_001920971.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498594|gb|ACD51730.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 309

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D           + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGKII-EEVHHLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  ++ +   +FNE     IAHNA FD+  +   L+  N + +   + I T
Sbjct: 58  PRMVQDELEFDKVWEKIKHYFNEN--LVIAHNASFDISVLRNTLELYNIE-MPSFQYICT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G    H   H AL D+    ++ + +
Sbjct: 115 MKLSKNFYSNLDNARLNTVNNFLGYEFKH---HDALADAMACGNILLNI 160


>gi|206889195|ref|YP_002247891.1| DNA polymerase III PolC-type, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741133|gb|ACI20190.1| DNA polymerase III PolC-type, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 225

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 17/187 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D E TGLD KND II IGA+ + + S      F   L P  +    +A+ +H +T 
Sbjct: 20  FVVIDTELTGLDEKNDSIISIGAITMRERSILIGDIFYRILNPQCKPKD-KAVLIHKLTS 78

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L+  P    I  EF DF   +    + H  + D+ F+  E  +       P   IDT 
Sbjct: 79  TELEQCPDIKLILKEFIDFIKNR--PIVGHFIEIDIKFLRKETSKWLNTGFTP-EAIDTY 135

Query: 128 ---------SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                     I  +K   ++  L  + + + I +     H AL D+ + + ++ + ++  
Sbjct: 136 IIFNWLIEREIISKKFKGAK-SLPEIAEAFDIKVDM--LHDALYDAFITAQIFQREIIMV 192

Query: 179 SQINFGF 185
            +IN  +
Sbjct: 193 QKINASW 199


>gi|187932792|ref|YP_001886212.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str.
           Eklund 17B]
 gi|187720945|gb|ACD22166.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str.
           Eklund 17B]
          Length = 309

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D           + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEII-EEVHHLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  ++ +   +FN+     IAHNA FD+  +   L+  N + +   + I T
Sbjct: 58  PRMVQDELEFDKVWEKIKHYFNKN--LVIAHNASFDISVLRNTLELYNLE-MPSFQYICT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + ++R  + +  N  LN++    G    H   H AL D+   S++ + +
Sbjct: 115 MKLSRNFYSNLDNARLNTVNNFLGYEFKH---HDALADAMACSNILLNI 160


>gi|237785374|ref|YP_002906079.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758286|gb|ACR17536.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 555

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 11/170 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNS--PEALKLHGI 65
            I FD+ET   +  N  I + G V   +  +       +LC P        P    +HGI
Sbjct: 223 FIAFDVETA--NEANGSICQFGVVVYHEGKE--AESHTWLCQPPSAWPDFTPATTAIHGI 278

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + + ++PS      +      ++N   +AHNAKFD+  +  +  R  K  +       
Sbjct: 279 TPDKVANEPSCHDRLEQLAALLRKENLPIVAHNAKFDMVAL-RDAARAEKVDIPHITFAC 337

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           T  +AR  HP      L ++ +  G    H   H AL D+    ++ + +
Sbjct: 338 TYLLARALHPELPNYKLTTVAQSAGSEAFHH--HDALADARACGEIMLSL 385


>gi|332829625|gb|EGK02271.1| hypothetical protein HMPREF9455_01541 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 256

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 12/178 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG D+  DRI+EI  +++  +  +  +T +  L P      P A
Sbjct: 1   MELNLKNPLVFFDLETTGTDTVKDRIVEISYLKVYPNGKQEVKTKR--LNPE-MPIPPGA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP- 117
             +HGI+DE +KD P+F  I     D    +  +    N ++FD+  +  E  R   D  
Sbjct: 58  TAVHGISDEDVKDCPTFKQIAKSLAD--QMEGCDLAGFNSSRFDIPLLAEEFLRAGVDID 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               ++ID   I    H   +  L +  K Y         H A  D+    +V    +
Sbjct: 116 FSKRKMIDVQII---FHKKEQRTLEAAYKFY-CDKELTDAHSAEADTLATFEVLKAQL 169


>gi|116333325|ref|YP_794852.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus brevis ATCC 367]
 gi|116098672|gb|ABJ63821.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus brevis ATCC 367]
          Length = 178

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET     K      +    + +    +  F   + P+        +++HGI 
Sbjct: 1   MNFVAMDFETA--SGKRYSACSLALTIVRNDQVVDE-FYSLIKPDT-DFFWRNVQIHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + + P+F  ++     FF +++   IAHNA FD G + + L+  N  P      +DT
Sbjct: 57  ERDVANAPTFPEVWQHVAPFF-QRDRLVIAHNAPFDNGVLRSSLEHYNLPPA-RYLTLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  +R+  P    + L+++C    I + H   H AL DS   +++ +
Sbjct: 115 VKTSRKFFPEFPNHKLDTVCDELDIDLHHH--HNALDDSLACANILL 159


>gi|312128938|ref|YP_003996278.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella
           byssophila DSM 17132]
 gi|311905484|gb|ADQ15925.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella
           byssophila DSM 17132]
          Length = 303

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 10/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET    ++ D   EIG   + D    + T    + P   +     + +HGI 
Sbjct: 1   MEFVTIDFETA--TAQRDSPCEIGLTFVQDGQIID-TKSWLIKPMYDEFDYFNILIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E + DKP F+ ++SE       +N   IAHNA FD+  +   L+     P        +
Sbjct: 58  PEHVADKPEFNELWSEIKPLV--ENKFLIAHNAGFDISVLRRTLEAYQL-PFPTLNYSCS 114

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              +++        DL +LCK   I + H   H A  DS   +++ +K
Sbjct: 115 YIFSKKVWQGLPAYDLKTLCKVNNINLKH---HRAGADSKATAELTLK 159


>gi|126661959|ref|ZP_01732958.1| putative DNA polymerase III epsilon chain [Flavobacteria bacterium
           BAL38]
 gi|126625338|gb|EAZ96027.1| putative DNA polymerase III epsilon chain [Flavobacteria bacterium
           BAL38]
          Length = 256

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 83/174 (47%), Gaps = 12/174 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K       FD+ETTG+D   DRI+EI   ++  + +K ++T+   + P      P+ 
Sbjct: 1   MELKLTRPICFFDLETTGIDVARDRIVEISIFKVYPNGNKESKTW--LVNPTI-PIPPQT 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGITDE + ++P+F  + ++  +    ++++    N  +FD+  +  EL R   D  
Sbjct: 58  TAVHGITDEKVANEPTFKELATQVHNMI--KDSDLAGFNSDRFDIPLLAEELLRAEVDFD 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVY 171
             +R+  ++ +    H      L++  K Y G ++ +   H A  D+    ++ 
Sbjct: 116 MKNRV--SVDVQTIFHKMEERTLSAAYKFYCGQSLEN--AHSAEADTMATYEIL 165


>gi|332877643|ref|ZP_08445386.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684392|gb|EGJ57246.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 258

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 12/199 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K       FD+ETTG+D   DRI+EI  +++  + +K ++T+   + P        A
Sbjct: 1   MELKLSKPICFFDLETTGIDITKDRIVEISILKVYPNGNKESKTW--LVNPTI-PIPAMA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGITDE + ++P+F  +  +  +    ++++   +N  +FD+  +  E+ R   D  
Sbjct: 58  SAVHGITDEKVANEPTFKELAKQIHNMI--KDSDLAGYNSDRFDIPLLAEEMLRAGVDFD 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +R+  T+ I    H   +  L++  K Y G  +     H A  D++   ++    +  
Sbjct: 116 LGNRV--TVDIQTIFHKMEQRTLSAAYKFYCGKDL--LEAHTAAADTNATYEILKAQLDK 171

Query: 178 GSQINFGFKTNEDRFFKEE 196
              +    K   +  ++++
Sbjct: 172 YDNLENNIKKLSEFTYRKQ 190


>gi|269102313|ref|ZP_06155010.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162211|gb|EEZ40707.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 242

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 27/193 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL+SK D I+ IG +    +   ++  Q ++    R  + E++ +HGIT  
Sbjct: 52  FVALDFETTGLNSKTDDIVSIGLIPFTIHRIYSKQAQHWVVKPKRPLAEESVVIHGITHS 111

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTL 127
            ++  P    I  +  D         + H    +  F++A LQ RI +    P  ++DTL
Sbjct: 112 DIQAAPDLRRILDQVLDALA--GKVVVVHYKTIERQFMDAALQLRIGEGIEFP--VVDTL 167

Query: 128 ----SIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                I R+KH    N           LN   +RYG+       H AL D+   +++   
Sbjct: 168 ALEYEIERQKHSGFWNRLRGRRPGSVRLNKCRERYGLPTY--QPHHALTDAIATAELL-- 223

Query: 174 MMVGGSQINFGFK 186
                +QI + F 
Sbjct: 224 ----QAQIAYHFT 232


>gi|333030104|ref|ZP_08458165.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
 gi|332740701|gb|EGJ71183.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
          Length = 256

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 12/178 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +  +DRI+EI  +++  + ++ ++T +  + P       E+
Sbjct: 1   MKLNLKNPIVFFDLETTGTNINSDRIVEICYLKVHPNGNEESKTLR--INPE-MPIPAES 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP- 117
             +HGI DE + D P+F  +        + + ++    N  +FD+  +  E  R   D  
Sbjct: 58  SAIHGIFDEDIADCPTFKEVAKNIAK--DIEGSDLAGFNSNRFDIPLLAEEFLRAGVDID 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L   + +D   I    H   +  L++  K Y    +    H A  D+    +V +  +
Sbjct: 116 LSKRKFVDVQVI---FHKMEQRTLSAAYKFY-CDKNLEDAHSAEADTRATYEVLMAQL 169


>gi|289663085|ref|ZP_06484666.1| ribonuclease T [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 211

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 17/181 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G D     ++EI  V +            T    L P  G +  P++L++ 
Sbjct: 25  PVVVDVETGGFDWNKHALLEIACVPIEMDAAGRFFPGDTASAHLVPAPGLEIDPKSLEIT 84

Query: 64  GITDEF-----LKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +       ++K +   +F+           Q A  + HNA FD+ F+NA + R+  
Sbjct: 85  GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 144

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++  
Sbjct: 145 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNTADAHSAVYDTEQTARLFCT 202

Query: 174 M 174
           +
Sbjct: 203 I 203


>gi|224372263|ref|YP_002606635.1| exonuclease [Nautilia profundicola AmH]
 gi|223589603|gb|ACM93339.1| exonuclease [Nautilia profundicola AmH]
          Length = 293

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 29/186 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ ++ D ETTG + + DRII++  + L +  +        + P     S EA+ +H IT
Sbjct: 1   MKIVILDTETTG-NKEEDRIIQLSYLVLNENLEIEEIHDELVKPP-LPISFEAMAVHHIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           +E ++DKP      +E +    E N+     + HNAKFD+  +    ++   +     ++
Sbjct: 59  NEMVEDKPLIKH--TESYKRLKELNSPENLLVIHNAKFDLDML----KKEGFNSF--FKL 110

Query: 124 IDTLSIARRKHPSSRNDLN-------------SLCKRYGITISHRSKHGALLDSHLLSDV 170
           IDT  + +   P  +  L               +C++Y I I   + H AL D  +L  +
Sbjct: 111 IDTFRVLKHLIPEGKFSLQYNRYALGLYKKEKDICEKYNIQI---NAHDALGDVIVLGLL 167

Query: 171 YIKMMV 176
           +  ++ 
Sbjct: 168 FEYLVT 173


>gi|294673575|ref|YP_003574191.1| DNA polymerase III subunit epsilon [Prevotella ruminicola 23]
 gi|294472509|gb|ADE81898.1| putative DNA polymerase III, epsilon subunit [Prevotella ruminicola
           23]
          Length = 285

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 88/216 (40%), Gaps = 16/216 (7%)

Query: 2   IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ N  +  ++FD+ETTGLD   DRII+I  +++       R     + P  +   P   
Sbjct: 1   MKLNLTKPLVIFDLETTGLDLVKDRIIQISYIKVYPDGHEERG-NELVNPE-KPIEPMIT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
           +L GI+++ +KDKP+F  + +   +       ++   N   FD+  +  E  R   D   
Sbjct: 59  QLTGISNDDVKDKPTFKQLGAVLAE--KFTGCDFAGFNSNHFDIPLLAEEFLRAGVDFDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYI---- 172
              ++ID  +I    H   R +L +  K Y G  +      H A  D+     V +    
Sbjct: 117 SKCKMIDAQTI---FHKMERRNLAAAYKFYCGRKMEEDFEAHRADQDTEATYRVLMGELD 173

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
           K   G ++       N+     E  +   N+    R
Sbjct: 174 KYAPGANEDPEKVLENDMNKLAEFSRVNNNVDFAGR 209


>gi|332703188|ref|ZP_08423276.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553337|gb|EGJ50381.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 246

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 79/192 (41%), Gaps = 20/192 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL 60
           I  ++    V D E TG+D + D I+ IGAV +   +      +   + P+         
Sbjct: 42  IPLDECEFTVLDTELTGMDHRRDEIVSIGAVRIRGMAIQPGANWYAVVRPSC--LPKACT 99

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +H IT   ++  P  S +  EF D+  +  +  + H+   D  F+N   +RI   P+  
Sbjct: 100 LIHRITPSEVEAAPELSDVLPEFADYLGQ--SLIVGHHVGMDAAFLNRACKRILGGPMA- 156

Query: 121 SRIIDTLSIAR------------RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           +  +DT+ +A+            R +     +L  L  +YG+       H AL D+   +
Sbjct: 157 NPCLDTMRLAQVYEEERWVSYYDRYNLRVSYNLTDLAAQYGLP--SFPAHNALSDAMQAA 214

Query: 169 DVYIKMMVGGSQ 180
            +++ ++     
Sbjct: 215 YLFLFLVRKLRS 226


>gi|156974738|ref|YP_001445645.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116]
 gi|156526332|gb|ABU71418.1| hypothetical protein VIBHAR_02456 [Vibrio harveyi ATCC BAA-1116]
          Length = 249

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 79/202 (39%), Gaps = 27/202 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
               ++  +  D ETTGL+++ D I+ IG V   L   + + +    + PN R+ + E++
Sbjct: 52  TPLKEVPFVSVDFETTGLNAEQDAILTIGLVPFTLGRVQCSGSRHWVVNPN-RELNEESV 110

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGITD  +K+ P    I     D         + H    +  F    L     + +  
Sbjct: 111 VIHGITDSEVKNAPQLEQILDAILDELA--GKIVVVHYKSIERQFFKNALLNSLGEGI-Q 167

Query: 121 SRIIDTL----SIARRKHPS----------SRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             ++DTL    +I RR+                 L    +RY +       H AL D+  
Sbjct: 168 FPVVDTLDIEYAIQRRECEGWLNKLKGKKPGSVRLGHARERYHLP--SYQPHHALTDALA 225

Query: 167 LSDVYIKMMVGGSQINFGFKTN 188
            +++        +Q+ + F  +
Sbjct: 226 TAELL------QAQLQYHFDGD 241


>gi|327183531|gb|AEA31978.1| hypothetical protein LAB52_05120 [Lactobacillus amylovorus GRL
           1118]
          Length = 298

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 14/175 (8%)

Query: 1   MIR---KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           MI+   KN    I  D+ETTGL++   +II IGA++  +       F   +  N      
Sbjct: 121 MIKGAIKND--FIAVDLETTGLNTSRSKIISIGAIK-ENLKGEEEQFYRLIKINEA-IPE 176

Query: 58  EALKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           +  +L G+T + L +   +     +EF  F   +    + +N  FD  F+      I + 
Sbjct: 177 KITELTGLTSKVLNERGVTLEQALNEFRKFVGSEM--IVGYNLSFDNNFLLKAYLSIGQR 234

Query: 117 PLDPSRIIDTLSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            L  + + D + I + +       DL ++ K YGI   +R  H AL D+     +
Sbjct: 235 AL-VNSMKDLMGIVKEKDIFLDNYDLETVLKEYGIKNDNR--HNALSDARATFKL 286


>gi|168182135|ref|ZP_02616799.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Bf]
 gi|237793573|ref|YP_002861125.1| DNA polymerase III subunit epsilon [Clostridium botulinum Ba4 str.
           657]
 gi|182674639|gb|EDT86600.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Bf]
 gi|229262587|gb|ACQ53620.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Ba4 str. 657]
          Length = 309

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D  K        + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDG-KIVEKVHYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +KD+  F  I+ +   +FN  N   IAHNA FD+  + + L+  N   +     I T
Sbjct: 58  PHMVKDELEFDKIWEKIKGYFN--NNLVIAHNASFDMSVLRSTLKLYNIK-MPSFEYICT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + S  N  LN++    G    H   H AL D+   S++ + +
Sbjct: 115 MKLSKNFYSSIDNARLNTVNNFLGYKFQH---HDALADAMACSNILLNI 160


>gi|251779366|ref|ZP_04822286.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243083681|gb|EES49571.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 309

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D           + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGKII-EEVHHLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  ++ +   +FNE     IAHNA FD+  +   L+  N + +   + I T
Sbjct: 58  PRMVQDELEFDKVWEKIKHYFNEN--LVIAHNASFDISVLRNTLELYNIE-MPSFQYICT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G    H   H AL D+    ++ + +
Sbjct: 115 MKLSKNFYSNLDNARLNTVNNFLGYEFKH---HDALADAMACGNILLNI 160


>gi|123442082|ref|YP_001006065.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089043|emb|CAL11861.1| putative exodeoxyribonuclease [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 220

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 23/173 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET GL      I+EI +++++D + +N      + P+ R  S +A+ +H IT
Sbjct: 1   MYFRVIDTETYGL---EGGIVEIASIDVMDGALSN-PMSDLVSPD-RPISLDAMVIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++ KP  +    ++     + +  ++AHNA FD G +          P    + I T
Sbjct: 56  EEMVEGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICT 100

Query: 127 LSIARRKHPSSRNDLNSL--CKRYGITISHR-SKHGALLDSHLLSDVYIKMMV 176
           L +AR  +P  ++    L    R  +++      H AL D ++ + +  ++M 
Sbjct: 101 LKLARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIMR 153


>gi|307327522|ref|ZP_07606708.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
 gi|306886921|gb|EFN17921.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
          Length = 274

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 11/173 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT-DEFL 70
           FD ETTGLD   DRI++   V      +     +  + P G     EA K+HGIT D  +
Sbjct: 15  FDTETTGLDVFKDRIVQAALVGQDRSGREVFREEWLINP-GILIPREATKIHGITSDRAM 73

Query: 71  KDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII--- 124
           +D    +    +      +        +  NA +D+  ++AE QR +  PL   R +   
Sbjct: 74  EDGQDPAEAIEQITGLLEKALRAGCALVIQNAPYDLALLDAEAQRHSVVPLAERRPVAPV 133

Query: 125 -DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            D + +A+      R+ L +L  R+G+T      H A  D+     V  K+M+
Sbjct: 134 LDPVMLAKVAKVEGRHSLAALSARFGVTNP--RAHTAYADAVTTLAVLRKLMM 184


>gi|308187156|ref|YP_003931287.1| exodeoxyribonuclease X [Pantoea vagans C9-1]
 gi|308057666|gb|ADO09838.1| exodeoxyribonuclease X [Pantoea vagans C9-1]
          Length = 223

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 87/245 (35%), Gaps = 28/245 (11%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET GL      +    A   +   +          P+ R  S +A+ +H IT
Sbjct: 1   MMFRVIDTETCGLQGGVVEV----ASVDVVNGQIVNPMSDLTLPD-RPISRQAMAVHRIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +  KP+       ++      +A ++AHNA FD   +                 I T
Sbjct: 56  EAMVAGKPTIEEAIPRYY-----GSAFYVAHNASFDRRMLPEMY----------GEWICT 100

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITIS---HRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           + +AR+  P  +    +L     + ++       H AL D ++ + + I++M   S    
Sbjct: 101 MQLARQLWPGIKYGNQALRHSLKLDVTPPADLHAHRALYDCYVTAALLIRIME-VSGWGA 159

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG---KNAIWDRY 240
                  +   +    +P      +   +  R     L      +  L    + A+ ++Y
Sbjct: 160 SEMIVRSQPAAQRDDILPFGKYRGQAIAVIARKDPGYLKWVLNNVSDLRPPLRQAL-NKY 218

Query: 241 ISSNQ 245
           +S +Q
Sbjct: 219 LSESQ 223


>gi|53803894|ref|YP_114507.1| ribonuclease T [Methylococcus capsulatus str. Bath]
 gi|53757655|gb|AAU91946.1| ribonuclease T [Methylococcus capsulatus str. Bath]
          Length = 209

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 17/188 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET+G D   + ++EI AV L           RT Q+ + P  G K    AL  +
Sbjct: 17  PVVVDVETSGFDPHANALLEIAAVHLDMDESGNLHPVRTHQLHVKPFEGAKLDEAALNFN 76

Query: 64  GITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINA--ELQRI 113
            I         + ++ + S IF        +        + HN  FD+ F+NA     RI
Sbjct: 77  KINPFHPFRFAVDEREALSQIFDAVQQSIRQHGCTRAILVGHNPAFDIAFLNAASSRARI 136

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            K+P  P    DT ++    +   +  L    +  G++  H+  H A  D++  + ++  
Sbjct: 137 KKNPFHPFSTFDTATLGGLAY--GQTVLARAAQAAGLSWDHQEAHSAAYDANQTARLFCT 194

Query: 174 MMVGGSQI 181
           ++    ++
Sbjct: 195 IVNRWKRM 202


>gi|296272299|ref|YP_003654930.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM
           7299]
 gi|296098846|gb|ADG94796.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM
           7299]
          Length = 209

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 11/175 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64
           K   +  D ETTGL+ K D I+ IGAV + +     ++TF +++ P+    S +++ +H 
Sbjct: 28  KNEYVCLDCETTGLNPKKDEILSIGAVIIKENKVLMSKTFNIYVKPSD-NISTQSILIHR 86

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I    L++         E   F   +    + +  KFD+  I+   ++     L  S I 
Sbjct: 87  IRPIDLENAIDPEEAIYELLKFIGSR--VIVGYYIKFDIAIISRYTKKYIGIKLPNSSIE 144

Query: 125 DTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +    R K   S         +++ K   I +  +  H AL D+ + S +++K+
Sbjct: 145 VSSMYYRTKKRRSDYEFVDLKFDTIMKELDIPLLGK--HDALNDAIMTSMIFLKL 197


>gi|153832018|ref|ZP_01984685.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
 gi|148872016|gb|EDL70839.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
          Length = 249

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 80/202 (39%), Gaps = 27/202 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
               ++  +  D ETTGL+++ D I+ IG V   L   + + +    + PN R+ + E++
Sbjct: 52  TPLKEVPFVSVDFETTGLNAEQDAILTIGLVPFTLGRVQCSGSRHWVVNPN-RELNEESV 110

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGITD  +K+ P    I     D         + H    +  F N  L     + +  
Sbjct: 111 VIHGITDSEVKNAPQLEQILDAILDELA--GKIVVVHYKNIERQFFNNALLNSLGEGI-Q 167

Query: 121 SRIIDTL----SIARRKHPS----------SRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             ++DTL    +I RR+                 L    +RY +       H AL D+  
Sbjct: 168 FPVVDTLDIEYAIQRRECEGWLNKLKGKKPGSVRLGHARERYHLP--AYQPHHALTDALA 225

Query: 167 LSDVYIKMMVGGSQINFGFKTN 188
            +++        +Q+ + F  +
Sbjct: 226 TAELL------QAQLQYHFDGD 241


>gi|330860723|emb|CBX71015.1| exodeoxyribonuclease 10 [Yersinia enterocolitica W22703]
          Length = 220

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 23/173 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET GL      I+EI +++++D + +N      + P+ R  S +A+ +H IT
Sbjct: 1   MYFRVIDTETCGL---EGGIVEIASIDVMDGALSN-PMSDLVSPD-RPISLDAMVIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++ KP  +    ++     + +  ++AHNA FD G +          P    + I  
Sbjct: 56  EEMVEGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICM 100

Query: 127 LSIARRKHPSSRNDLNSL--CKRYGITISHR-SKHGALLDSHLLSDVYIKMMV 176
           L +AR  +P  ++    L    R  +++      H AL D ++ + +  ++M 
Sbjct: 101 LKLARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIMR 153


>gi|123442599|ref|YP_001006576.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089560|emb|CAL12409.1| exodeoxyribonuclease [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 221

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 84/217 (38%), Gaps = 28/217 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ETT        ++EI +V+++D    N     F+ P     S EA+ +H IT
Sbjct: 1   MIFRVIDTETTSF---EGSVLEIASVDIVDGKICN-PMSDFVKPTEA-ISFEAMAIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + D P    +  ++ D        ++AHNA FD   +          P   +  + T
Sbjct: 56  ENMVADAPLIEHVIDKYLDA-----DIYVAHNAAFDREKL----------PQITAPWVCT 100

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITIS---HRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           L ++R+  P   +    L   +G+          H AL D ++ +++ + M         
Sbjct: 101 LKLSRKLWPEGGHGNQYLRYAHGLNPDVPEGLHAHRALYDCYVTAELLLHMNRIAR---- 156

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
            +   E R   +    +  ++  K     FT I  E+
Sbjct: 157 -WTVAEMREITKRPSLLHAMAFGKHKGKTFTDIASED 192


>gi|29654993|ref|NP_820685.1| ribonuclease T [Coxiella burnetii RSA 493]
 gi|153207536|ref|ZP_01946219.1| ribonuclease T [Coxiella burnetii 'MSU Goat Q177']
 gi|154706868|ref|YP_001423724.1| ribonuclease T [Coxiella burnetii Dugway 5J108-111]
 gi|165918353|ref|ZP_02218439.1| ribonuclease T [Coxiella burnetii RSA 334]
 gi|212217974|ref|YP_002304761.1| ribonuclease T [Coxiella burnetii CbuK_Q154]
 gi|29542262|gb|AAO91199.1| ribonuclease T [Coxiella burnetii RSA 493]
 gi|120576504|gb|EAX33128.1| ribonuclease T [Coxiella burnetii 'MSU Goat Q177']
 gi|154356154|gb|ABS77616.1| ribonuclease T [Coxiella burnetii Dugway 5J108-111]
 gi|165918003|gb|EDR36607.1| ribonuclease T [Coxiella burnetii RSA 334]
 gi|212012236|gb|ACJ19616.1| ribonuclease T [Coxiella burnetii CbuK_Q154]
          Length = 224

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 69/182 (37%), Gaps = 17/182 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NGRKNSPEALKLH 63
            +V DIET GL+   + ++EI AV +    +        F   + P  G    P +L++ 
Sbjct: 20  PVVVDIETGGLEPLKNPLLEIAAVLVEVNKEGQLCQGELFACHVLPFEGAALDPASLEIT 79

Query: 64  GITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAELQRINK 115
            I      +          + + F          + A  + HNA FD+ FI A ++R   
Sbjct: 80  RIDPYHPFRFAVDEKKALQDLFAFVEKAVNVAQCRRAVLVGHNAHFDLTFIQAAMKRCKL 139

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              P       DT ++A       +  L    +   +    +  H A+ D+   ++++ K
Sbjct: 140 KKSPFHAFTCFDTATLAAIVF--GKTVLAKALRAANLPFDKKEAHSAIYDAKCAAELFCK 197

Query: 174 MM 175
           + 
Sbjct: 198 IT 199


>gi|52843158|ref|YP_096957.1| ribonuclease T [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|19880967|gb|AAM00600.1| Rnase T [Legionella pneumophila]
 gi|52630269|gb|AAU29010.1| ribonuclease T [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 207

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 81/197 (41%), Gaps = 19/197 (9%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    +V D+ET G+D + + ++E+  V    +     K + ++   + P  G + 
Sbjct: 13  KNRFRGFLPVVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKDSSYFEHILPFPGAEL 72

Query: 56  SPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFIN 107
             ++L+ + I         + ++ +   +F    D       Q A  + HNA FD+ FI 
Sbjct: 73  DQKSLEFNQIDPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIK 132

Query: 108 AELQRINKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A ++R     P       DT ++A          L    +  G+    +  H A+ D+  
Sbjct: 133 AAIKRTGIKSPFHAFTCFDTATLAGLIF--GETVLAKAAQAAGLHFDSQEAHSAIYDAEK 190

Query: 167 LSDVYIKMMVGGSQINF 183
            +D++  M+     +N 
Sbjct: 191 TADLFCLMINKWRMLNI 207


>gi|253572229|ref|ZP_04849632.1| DNA Pol III epsilon chain [Bacteroides sp. 1_1_6]
 gi|298386580|ref|ZP_06996136.1| exonuclease [Bacteroides sp. 1_1_14]
 gi|251838004|gb|EES66092.1| DNA Pol III epsilon chain [Bacteroides sp. 1_1_6]
 gi|298260957|gb|EFI03825.1| exonuclease [Bacteroides sp. 1_1_14]
          Length = 259

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 78/210 (37%), Gaps = 15/210 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +   DRI+EI  +++  + ++  +T +  + P        +
Sbjct: 1   MKLNLKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEETKTMR--INPEMH-IPEAS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI D  + D P+F  +        + +  +    N  +FD+  +  E  R   D  
Sbjct: 58  SAVHGIYDADVADCPTFKEVAKNVAR--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVDID 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              R    + +    H   +  L++  K Y    S    H A  D+    +V    +   
Sbjct: 116 MTKRKF--VDVQVIFHKMEQRTLSAAYKFY-CEKSLEDAHTAEADTRATYEVLKAQLDRY 172

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
             +      N+  F  E      N+    R
Sbjct: 173 PDLQ-----NDIAFLAEYSSFTKNVDFAGR 197


>gi|288818861|ref|YP_003433209.1| exonuclease [Hydrogenobacter thermophilus TK-6]
 gi|288788261|dbj|BAI70008.1| exonuclease [Hydrogenobacter thermophilus TK-6]
 gi|308752448|gb|ADO45931.1| Exonuclease RNase T and DNA polymerase III [Hydrogenobacter
           thermophilus TK-6]
          Length = 216

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 12/169 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D ETTGLD K D  I IGA+++ D     +++F   + P        ++++HGIT 
Sbjct: 42  FVVCDTETTGLDLKKDEPIAIGALKVKDLCIDLSQSFYRLIKPQT-PPKRSSIEVHGITP 100

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L        +  EF +F   + +  + +    D+  +   L+     P  P   +D L
Sbjct: 101 SDLDIAKEREEVSKEFLEF--SRGSLLVGYFFYIDLVMLKKLLKSFCSVPFVPYS-LDVL 157

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 + S ++  L+ +   + +  S  S H AL D+++ + V++K++
Sbjct: 158 ----DLYKSEKHISLDEMLSLFDLPSS--SHHSALEDAYMTALVFLKLI 200


>gi|255014610|ref|ZP_05286736.1| putative exonuclease/DNA polymerase III epsilon c [Bacteroides sp.
           2_1_7]
 gi|293373643|ref|ZP_06619990.1| exonuclease [Bacteroides ovatus SD CMC 3f]
 gi|292631298|gb|EFF49929.1| exonuclease [Bacteroides ovatus SD CMC 3f]
          Length = 163

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   +++   +  +G V + D   T+ TF   + P     +    ++HG+T +
Sbjct: 4   FAAIDFETA--NNQRSSVCSVGIVIVRDGEITD-TFYSLINPEPNYYNYWCSQVHGLTRK 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              + P F  ++ +       +    +AHN  FD G + A   R+ +         DTLS
Sbjct: 61  DTDNAPVFPEVWRQIEPLI--EGLPLVAHNRPFDEGCLKAVF-RVYQMDYPCYEFYDTLS 117

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +RR  P    + L+++ +  G  +  ++ H AL D+   + +  +++
Sbjct: 118 ASRRALPCLPNHQLHTVAEACGYQL--KNHHHALADAEACAWIAREIL 163


>gi|150025497|ref|YP_001296323.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86]
 gi|149772038|emb|CAL43514.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 256

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 89/193 (46%), Gaps = 12/193 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K       FD+ETTG+D   DRI+EI   ++  + +K ++T+   + P       + 
Sbjct: 1   MELKLTRPICFFDLETTGIDIGKDRIVEISVFKIFPNGNKESKTW--LVNPTI-PIPAQT 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGITDE + ++P+F+ + S+ ++    ++++    N  +FD+  +  EL R   D  
Sbjct: 58  TAVHGITDEKVANEPTFNELASQVYNMI--KDSDLAGFNSDRFDIPLLAEELLRAGVDFD 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVG 177
              R+  ++ +    H      L++  K Y G ++ +   H A  D+    ++    +  
Sbjct: 116 MKGRV--SVDVQTVFHKMEERTLSAALKFYTGKSLEN--AHSAEADTMATYEILKAQLDR 171

Query: 178 GSQINFGFKTNED 190
             ++    K+  +
Sbjct: 172 YPELENDMKSLSE 184


>gi|296117576|ref|ZP_06836160.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969307|gb|EFG82548.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 467

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 94/244 (38%), Gaps = 30/244 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE---ALKLHGI 65
            +  D+ET   +     I +IGAV  +   +T     V+LC             + +HGI
Sbjct: 107 FVAVDVETA--NGNWGSICQIGAVRFVAGEETESK--VWLCQPPAGIDHFDDINISIHGI 162

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + +KD P+F+    E   F  +     +AHNA+FD   + +   R  + P+    +  
Sbjct: 163 TADDVKDAPTFAEAAGELLTFMRDD--VLVAHNAQFDATALRSAFLRT-QTPVPEMALAC 219

Query: 126 TLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH-------LLSDVYIK 173
           +L++AR     +    + + L ++ K   ++      H AL D+         L+  +  
Sbjct: 220 SLALARYASKSKVLSVANHKLPTVAKA--VSFGDFQHHDALDDARAAGHIISALAPAFEN 277

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
            + G   I   F     +      + +  + +LK+D      I+ E+L            
Sbjct: 278 AIAGEQSIRDVFDAQGFQLGAMSAEHI--MPVLKKDT---APISPEDLGAGTDFRDRTSS 332

Query: 234 NAIW 237
           +  W
Sbjct: 333 DP-W 335


>gi|212211731|ref|YP_002302667.1| ribonuclease T [Coxiella burnetii CbuG_Q212]
 gi|212010141|gb|ACJ17522.1| ribonuclease T [Coxiella burnetii CbuG_Q212]
          Length = 221

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 69/182 (37%), Gaps = 17/182 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NGRKNSPEALKLH 63
            +V DIET GL+   + ++EI AV +    +        F   + P  G    P +L++ 
Sbjct: 20  PVVVDIETGGLEPLKNPLLEIAAVLVEVNKEGQLCQGELFACHVLPFEGAALDPASLEIT 79

Query: 64  GITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAELQRINK 115
            I      +          + + F          + A  + HNA FD+ FI A ++R   
Sbjct: 80  RIDPYHPFRFAVDEKKALQDLFAFVEKAVNVAQCRRAVLVGHNAHFDLTFIQAAMKRCKL 139

Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              P       DT ++A       +  L    +   +    +  H A+ D+   ++++ K
Sbjct: 140 KKSPFHAFTCFDTATLAAIVF--GKTVLAKALRAANLPFDKKEAHSAIYDAKCAAELFCK 197

Query: 174 MM 175
           + 
Sbjct: 198 IT 199


>gi|138894977|ref|YP_001125430.1| hypothetical protein GTNG_1315 [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266490|gb|ABO66685.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 242

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 13/194 (6%)

Query: 3   RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R   +  ++ D+ETTG    + D I+ + A + ++   T  T+   + P  +        
Sbjct: 56  RLTDIPFVIIDMETTGFSPQQGDEILAMAAAKTVNGLVTG-TYMTLVKPE-KPIPEHISD 113

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GI  + +   P  +     F  F +      + ++   D+ F+   L R  +      
Sbjct: 114 LTGIEAKDVVFAPPLAEALRTFVPFISAG--VLVGYHIGHDLSFLRHVLWRHYRQKWS-W 170

Query: 122 RIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           R +D   I +  +HP     L+     YGI    R  H A  D   +  ++  ++    +
Sbjct: 171 RFVDMQPIVSLVRHPCP--TLDDALACYGIDCPRR--HTADGDVEAMVKLWAILLGELRE 226

Query: 181 INFGFKTNEDRFFK 194
           +  G +T  D +  
Sbjct: 227 L--GIETLHDLYAA 238


>gi|269798688|ref|YP_003312588.1| UvrD/REP helicase [Veillonella parvula DSM 2008]
 gi|269095317|gb|ACZ25308.1| UvrD/REP helicase [Veillonella parvula DSM 2008]
          Length = 862

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+E+TG D+  DRII+I A+ + +  +   TF+ F+ P       ++ ++HG +D +
Sbjct: 495 VVYDVESTGTDTAQDRIIQIAAIRIDEDGQVLETFERFINPG--VPVGQSEEVHGFSDAY 552

Query: 70  LKDKPSFSS-IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L++     + +   F +F   +NA  + HN  +DV     EL R N    +   I DTL 
Sbjct: 553 LQEHGEEPAIVLQAFKEF--SKNAIIVGHNVNYDVTIFTNELARHNLGNPEFKAIYDTLD 610

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           I RR +P+   + L  L  ++   I H   H A+ D    + + I  +
Sbjct: 611 IYRRFYPNLPNHKLGFLASKF--PIHHEPTHNAMDDILATAQLLIYAV 656


>gi|194365080|ref|YP_002027690.1| ribonuclease T [Stenotrophomonas maltophilia R551-3]
 gi|194347884|gb|ACF51007.1| ribonuclease T [Stenotrophomonas maltophilia R551-3]
          Length = 194

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 17/187 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G DS+ + ++EI AV +           +T    + P  G +  P
Sbjct: 4   RFRGFLPVVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHVVPAEGLEIDP 63

Query: 58  EALKLHG-ITDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAE 109
           ++L++ G I D   +      +               +  Q A  + HNA FD+GF+NA 
Sbjct: 64  KSLEVTGIILDHPFRLAKEEKAALDHIFTPVRAAMKKYGCQRAILVGHNAHFDLGFVNAA 123

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           + R    ++P  P  + DT+++A   +   +  L       G+       H A+ D+   
Sbjct: 124 VARTGHKRNPFHPFSVFDTVTLAGIAY--GQTVLARAANAAGLGWDANEAHSAVYDTEQT 181

Query: 168 SDVYIKM 174
           + ++  +
Sbjct: 182 ARLFCTI 188


>gi|190573537|ref|YP_001971382.1| ribonuclease T [Stenotrophomonas maltophilia K279a]
 gi|190011459|emb|CAQ45077.1| putative ribonuclease T [Stenotrophomonas maltophilia K279a]
          Length = 216

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 17/187 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G DS+ + ++EI AV +           +T    + P  G +  P
Sbjct: 26  RFRGFLPVVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHVVPAEGLEIDP 85

Query: 58  EALKLHG-ITDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAE 109
           ++L++ G I D   +      +               +  Q A  + HNA FD+GF+NA 
Sbjct: 86  KSLEVTGIILDHPFRLAKEEKAALDHIFTPVRAAMKKYGCQRAILVGHNAHFDLGFVNAA 145

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           + R    ++P  P  + DT+++A   +   +  L       G+       H A+ D+   
Sbjct: 146 VARTGHKRNPFHPFSVFDTVTLAGIAY--GQTVLARAATAAGLGWDANEAHSAVYDTEQT 203

Query: 168 SDVYIKM 174
           + ++  +
Sbjct: 204 ARLFCTI 210


>gi|289670069|ref|ZP_06491144.1| ribonuclease T [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 211

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 17/181 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G D     ++EI  V +            T    L P  G +  P++L++ 
Sbjct: 25  PVVVDVETGGFDWNKHALLEIACVPIEMDAAGRFFPGDTASAHLVPAPGLEIDPKSLEIT 84

Query: 64  GITDEF-----LKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +       ++K +   +F+           Q A  + HNA FD+ F+NA + R+  
Sbjct: 85  GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 144

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++  
Sbjct: 145 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCT 202

Query: 174 M 174
           +
Sbjct: 203 I 203


>gi|328943837|ref|ZP_08241302.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Atopobium vaginae DSM 15829]
 gi|327491806|gb|EGF23580.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Atopobium vaginae DSM 15829]
          Length = 337

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 13/174 (7%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +  + ++ DIET+GL+  +D+IIEIGA+ + D  K    +Q  +  +    SP   +L 
Sbjct: 165 LSDKKFVILDIETSGLNETDDKIIEIGAIRICD--KQVDDYQCLIKRDSLNLSPAITQLT 222

Query: 64  GITDEFLKDK---PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           G+TD  L ++   P+     +    F        + +N  FD+ FIN EL+ +N++ LD 
Sbjct: 223 GLTDIELANRGVNPNL--ALNGLKQFIGH--LPVLGYNIAFDMRFINNELRSMNEELLD- 277

Query: 121 SRIIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +R ID +   ++ K       L+++ K YGI+ +    H AL D+ L++ + +K
Sbjct: 278 NREIDVMRFIKKEKMFLESYALDNVLKVYGISAT--VPHRALGDAKLIAKLALK 329


>gi|256112395|ref|ZP_05453316.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3
          str. Ether]
 gi|265993832|ref|ZP_06106389.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3
          str. Ether]
 gi|262764813|gb|EEZ10734.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3
          str. Ether]
          Length = 80

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 44/80 (55%), Positives = 57/80 (71%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          MR+IVFD ETTGL+   DR+IEIG VEL++   T RTF  F+ P GR+  P+AL +HGI+
Sbjct: 1  MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60

Query: 67 DEFLKDKPSFSSIFSEFWDF 86
          +E L DKP F+ I  EF +F
Sbjct: 61 NEQLLDKPVFAEILDEFLEF 80


>gi|308234286|ref|ZP_07665023.1| CRISPR-associated endoribonuclease Cas2 [Atopobium vaginae DSM
           15829]
          Length = 297

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 13/174 (7%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +  + ++ DIET+GL+  +D+IIEIGA+ + D  K    +Q  +  +    SP   +L 
Sbjct: 125 LSDKKFVILDIETSGLNETDDKIIEIGAIRICD--KQVDDYQCLIKRDSLNLSPAITQLT 182

Query: 64  GITDEFLKDK---PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           G+TD  L ++   P+     +    F        + +N  FD+ FIN EL+ +N++ LD 
Sbjct: 183 GLTDIELANRGVNPNL--ALNGLKQFIGH--LPVLGYNIAFDMRFINNELRSMNEELLD- 237

Query: 121 SRIIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +R ID +   ++ K       L+++ K YGI+ +    H AL D+ L++ + +K
Sbjct: 238 NREIDVMRFIKKEKMFLESYALDNVLKVYGISAT--VPHRALGDAKLIAKLALK 289


>gi|146310438|ref|YP_001175512.1| exodeoxyribonuclease X [Enterobacter sp. 638]
 gi|145317314|gb|ABP59461.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638]
          Length = 223

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 82/214 (38%), Gaps = 26/214 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETTGL+   + ++E+ +V+++D    N      + P G     EA+ +H IT++ +
Sbjct: 4   VIDTETTGLEGGPETVVELASVDIVDGVICN-PMSDLVKP-GVAIGFEAMAIHHITEDMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P  S +      +       ++AHNAKFD   +          P   +  I T  +A
Sbjct: 62  EGAPLLSEVIGR---YLGAD--AYVAHNAKFDKSKL----------PQIDAPWICTAKLA 106

Query: 131 RRKHPSSR-NDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           R   P  + +    L    G+          H AL D ++ +++ + M          + 
Sbjct: 107 RSLLPEHKSHSNQYLRYSLGLKPEVPEGLYAHRALYDCYVTAELLLYMGRLAK-----WT 161

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
             E R        +  +   K     F  + K E
Sbjct: 162 MGEMRAISNNPSLLNALRFGKHKGVSFAELAKTE 195


>gi|327313528|ref|YP_004328965.1| exonuclease [Prevotella denticola F0289]
 gi|326944167|gb|AEA20052.1| exonuclease [Prevotella denticola F0289]
          Length = 284

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 11/167 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTGLD  NDRII+I  +++L   K  R   +F+ P  +    E  +L GI+ + 
Sbjct: 10  VVFDLETTGLDLVNDRIIQISFIKVLPDGKEERE-NIFINPE-KPIPTEVTQLTGISHKD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-LDPSRIIDTL 127
           + D P+F     E  D F     ++   N  +FDV  +  E  R   D     SR+ID  
Sbjct: 68  VADAPTFRQKAKELADRFA--GCDFAGFNSNRFDVPMLAEEFLRAGVDFDFSKSRLIDAQ 125

Query: 128 SIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYI 172
           +I    H   R +L +  K Y G  +      H A  D+     V  
Sbjct: 126 NI---YHKMERRNLAAAYKFYCGRKMEEDFEAHKADQDTEATWRVLQ 169


>gi|262274601|ref|ZP_06052412.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
 gi|262221164|gb|EEY72478.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
          Length = 245

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 78/200 (39%), Gaps = 23/200 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           + ++ +  D+ETTGLD   + II IG V   LD           + P  R    E++  H
Sbjct: 51  SDVQFVALDLETTGLDPSQNDIISIGLVPFTLDRIYCRDAKHWIVKP-RRPLEAESVVFH 109

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSR 122
           GIT   + D P    I  E       +    +AH  + +  F+ A ++ R+ +  L P  
Sbjct: 110 GITHSDVSDAPDLRRILEEVLASL--EGKIVVAHYRRIERDFLEAAVESRLGESLLFP-- 165

Query: 123 IIDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           ++DTL I    +              P +   L    +RY +       H AL D+   +
Sbjct: 166 VVDTLEIESWYYRKPIQKFWSYVLKKPLTSIRLADSRRRYNLPFYQG--HNALTDAIATA 223

Query: 169 DVYIKMMVGGSQINFGFKTN 188
           ++    +    + ++  K  
Sbjct: 224 ELLQAQIAHRFRRDYPIKAL 243


>gi|325917515|ref|ZP_08179720.1| RNAse T [Xanthomonas vesicatoria ATCC 35937]
 gi|325536273|gb|EGD08064.1| RNAse T [Xanthomonas vesicatoria ATCC 35937]
          Length = 213

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 17/181 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G D     ++EI  V    +         T    L P  G +  P++L++ 
Sbjct: 27  PVVVDVETGGFDWNKHALLEIACVPIEMDADGRFFPGETASAHLVPAPGLEIDPKSLEIT 86

Query: 64  GITDEF-----LKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  +       ++K +   +F+           Q A  + HNA FD+ F+NA + R+  
Sbjct: 87  GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 146

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++  
Sbjct: 147 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCT 204

Query: 174 M 174
           +
Sbjct: 205 I 205


>gi|213618910|ref|ZP_03372736.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 218

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 20/154 (12%)

Query: 26  IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85
           I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  + DKP    +      
Sbjct: 2   IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMVADKPWIEDVIP---- 55

Query: 86  FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLC 145
                +  ++AHNA FD   +          P  P   I T+ ++RR  P  +    +L 
Sbjct: 56  -LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLSRRLWPGIKYSNMALY 104

Query: 146 KRYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176
           K   +++        H AL D ++ + + I +M 
Sbjct: 105 KSRKLSVQTPPGLHHHRALYDCYITAALLIDIMR 138


>gi|326693810|ref|ZP_08230815.1| DNA polymerase III, epsilon subunit [Leuconostoc argentinum KCTC
           3773]
          Length = 177

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + +    + +    +      +  F   + P     S     +HGI 
Sbjct: 1   MNFVAMDFETA--NHEKHSAVSMALAVVRQNEVVDE-FYSLIQPETY-FSARNTAIHGIR 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ +   P F  I+++    F  ++   +AHNA FD G +   L     +      ++DT
Sbjct: 57  EQDVAQAPKFPEIWAQVSPLF-TEDKLVVAHNAPFDHGVLQGTLAYYGIEA-PHYMLLDT 114

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  +R+  P  R + LN++ +  GIT+ H   H AL D+   + + I
Sbjct: 115 VRSSRQLFPHFRNHKLNTVAENLGITLDHH--HNALDDAVAAAQILI 159


>gi|323466912|gb|ADX70599.1| DNA polymerase III alpha chain [Lactobacillus helveticus H10]
          Length = 177

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + D    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHFPESA--CSLALVMVRDNKIVDR-FYTVINPQ-MSFDARNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +K+ P+ + ++ +      +      AHN +FD   +   L R N +      +IDT
Sbjct: 57  ADDVKNAPTMAEVWPKI-KGLYQPGMLVAAHNTRFDTNVMRQSLARYNIEE-PHYLVIDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L+ ++   P    + L+++     + + H   H AL DS   + + I
Sbjct: 115 LATSKLFEPELPNHKLDTVSDALDVELWHH--HNALSDSEACAGILI 159


>gi|227893216|ref|ZP_04011021.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
 gi|227864985|gb|EEJ72406.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
          Length = 177

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHYPESA--CSLALVMVRNNEIVDR-FYTVINPQ-MLFDARNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K+ P+ + ++ +      +      AHNA+FD   +   L R N +      +IDT
Sbjct: 57  AEDVKNAPTMAEVWPKI-KGLYQPGMLVAAHNARFDTNVMRQSLARYNIEE-PHYLVIDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L+ ++   P    + L+++     + + H   H AL DS   + + I
Sbjct: 115 LATSKLFEPELPNHKLDTVSSTLDVELWHH--HNALSDSEACAGILI 159


>gi|251782080|ref|YP_002996382.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390709|dbj|BAH81168.1| ATP-dependent DNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 820

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 10/159 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  +   +  V D+E T   +    II++G V +++  +   T+Q  + P+    S    
Sbjct: 1   MSNEMTRKYAVVDLEATNAGA-TAAIIQVGIV-IIEGKEVVETYQTDINPH-EPLSDHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD  L   P FS +    ++  +  +  ++AHN KFD   +   L     + L P
Sbjct: 58  ALTGITDAQLAQAPEFSQVAKTIYELIS--DCVFVAHNVKFDANLLAEALFFEGYELLTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKH 158
              +DT+ +A+  +PS  +  L  L    G+ +     H
Sbjct: 116 --RVDTVELAQIFYPSLEKYTLGHLSAELGLELE--EAH 150


>gi|323126941|gb|ADX24238.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 820

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 10/159 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  +   +  V D+E T   +    II++G V +++  +   T+Q  + P+    S    
Sbjct: 1   MSNEMTRKYAVVDLEATNAGA-TAAIIQVGIV-IIEGKEVVETYQTDINPH-EPLSDHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD  L   P FS +    ++  +  +  ++AHN KFD   +   L     + L P
Sbjct: 58  ALTGITDAQLAQAPEFSQVAKTIYELIS--DCVFVAHNVKFDANLLAEALFFEGYELLTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKH 158
              +DT+ +A+  +PS  +  L  L    G+ +     H
Sbjct: 116 --RVDTVELAQIFYPSLEKYTLGHLSAELGLELE--EAH 150


>gi|237715177|ref|ZP_04545658.1| DNA Pol III epsilon chain [Bacteroides sp. D1]
 gi|262408870|ref|ZP_06085415.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647646|ref|ZP_06725213.1| exonuclease [Bacteroides ovatus SD CC 2a]
 gi|294810715|ref|ZP_06769363.1| exonuclease [Bacteroides xylanisolvens SD CC 1b]
 gi|298481744|ref|ZP_06999934.1| exonuclease [Bacteroides sp. D22]
 gi|229445010|gb|EEO50801.1| DNA Pol III epsilon chain [Bacteroides sp. D1]
 gi|262353081|gb|EEZ02176.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637012|gb|EFF55463.1| exonuclease [Bacteroides ovatus SD CC 2a]
 gi|294442048|gb|EFG10867.1| exonuclease [Bacteroides xylanisolvens SD CC 1b]
 gi|295087704|emb|CBK69227.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Bacteroides xylanisolvens XB1A]
 gi|298271966|gb|EFI13537.1| exonuclease [Bacteroides sp. D22]
          Length = 259

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 15/210 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +   DRI+EI  +++  + ++  +T +  + P        +
Sbjct: 1   MKLNLKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTLR--INPEMH-IPEAS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI D  + D P+F  +        + +  +    N  +FD+  +  E  R   D  
Sbjct: 58  SAIHGIYDADVADCPTFKEVAKNIAR--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVDID 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              R    + +    H   +  L++  K Y    +    H A  D+    +V    +   
Sbjct: 116 MTKRKF--VDVQVIFHKMEQRTLSAAYKFY-CDKNLEDAHTAEADTRATYEVLKAQLDRY 172

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
           S +      N+  F  +      N+    R
Sbjct: 173 SDLQ-----NDIAFLADYSSFSKNVDFAGR 197


>gi|318076131|ref|ZP_07983463.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
          Length = 384

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 30/229 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG D + DRI+   AV  LD S T    + +L   G +   EA  +HGI     +
Sbjct: 11  FDLETTGTDVEQDRIVT-AAVIRLDSSGTVAHTRTWLLDPGVEIPAEATAIHGIPTARAR 69

Query: 72  --DKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPL------DP 120
               P+  ++  E  +    +       +  NA++D+  ++ E +R     L      +P
Sbjct: 70  ADGAPARGAVA-EITEALAAELRAGTPLVVMNARYDLSLLDRECRRHGVPALAELLGAEP 128

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG- 177
           + +ID L + +   ++      L +LC  YG+ +   + H A  D+   + +  + +   
Sbjct: 129 APVIDPLVLDKHADRYRRGSRVLAALCAHYGVRLD--TAHDARSDALA-ATLLARSLGAH 185

Query: 178 -----------GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
                        ++       +    +E  +     ++++   P+  R
Sbjct: 186 HPTLGTLPPTDLHRLQIDAAARQSASLQEYLRRTKPDAVVEGAWPVIPR 234


>gi|253800757|ref|YP_003033758.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 1435]
 gi|289555976|ref|ZP_06445186.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 605]
 gi|297636389|ref|ZP_06954169.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN
           4207]
 gi|297733383|ref|ZP_06962501.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN
           R506]
 gi|313660714|ref|ZP_07817594.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN
           V2475]
 gi|253322260|gb|ACT26863.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 1435]
 gi|289440608|gb|EFD23101.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 605]
 gi|328460485|gb|AEB05908.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 4207]
          Length = 329

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 84/214 (39%), Gaps = 25/214 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      RII +  + L    +  ++    L P   K  P    +HG+T  
Sbjct: 16  WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAA 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  +P F+ I  E  D    +    +AHN  FD  F+ AE +   +  L    ++ T+ 
Sbjct: 73  MLDGQPQFADIAGEVVDVL--RGRTLVAHNVAFDYAFLAAEAEIA-EAELPVDFVMCTVE 129

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   + +    +  H A  D  +L+ +    +    +++     
Sbjct: 130 LARRLQLGVDNLRLETLAAHWRVP--QQRPHDAFDDVRVLTGILAAALESARELDVWL-- 185

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
                        P   + +R  P   R+T +EL
Sbjct: 186 -------------PVHPVTRRRWP-NGRVTHDEL 205


>gi|254524060|ref|ZP_05136115.1| ribonuclease T [Stenotrophomonas sp. SKA14]
 gi|219721651|gb|EED40176.1| ribonuclease T [Stenotrophomonas sp. SKA14]
          Length = 194

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 17/187 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G DS+ + ++EI AV +           +T    + P  G +  P
Sbjct: 4   RFRGFLPVVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHVVPAEGLEIDP 63

Query: 58  EALKLHG-ITDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAE 109
           ++L++ G I D   +      +               +  Q A  + HNA FD+GF+NA 
Sbjct: 64  KSLEVTGIILDHPFRLAKEEKAALDHIFVPVRAAMKKYGCQRAILVGHNAHFDLGFVNAA 123

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           + R    ++P  P  + DT+++A   +   +  L       G+       H A+ D+   
Sbjct: 124 VARTGHKRNPFHPFSVFDTVTLAGIAY--GQTVLARAATAAGLGWDANEAHSAVYDTEQT 181

Query: 168 SDVYIKM 174
           + ++  +
Sbjct: 182 ARLFCTI 188


>gi|227510619|ref|ZP_03940668.1| DNA-directed DNA polymerase III [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190271|gb|EEI70338.1| DNA-directed DNA polymerase III [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 177

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET   ++K      +    + +   T+  F   + P     S   + +HGI 
Sbjct: 1   MNFAAMDFETA--NAKRASACSLALAIVRNNQVTHE-FYSLINPET-DFSWRNINVHGIH 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + + P+F  ++      F   N   +AHNA FD   +   L+R +   L     +DT
Sbjct: 57  KQDVANAPTFPELWDHIAPLFTA-NKLVVAHNASFDNSVLKRTLERYDL-LLPHYLTLDT 114

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L  +++ +P    + LN++C    I + H   H AL DS   +++ +
Sbjct: 115 LKTSKQFYPQMVNHKLNTVCDELHIELEHH--HNALDDSVACANILL 159


>gi|153867763|ref|ZP_01998021.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. SS]
 gi|152144917|gb|EDN71979.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. SS]
          Length = 149

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 40/127 (31%), Positives = 69/127 (54%), Gaps = 6/127 (4%)

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +I DTL++AR+ HP  +N L++LCKRY +  S R +HGALLD+ +L++VY+ M  G  
Sbjct: 25  CQKITDTLALARKCHPGQKNTLDALCKRYHVDNSTRQRHGALLDAKILAEVYLAMTGGQV 84

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNA 235
            +     TNE       K+  P     +R   +    ++EEL  H++ +  +    G   
Sbjct: 85  SLLVQRNTNESNNANIMKQLKPI--PSQRAILVRITPSEEELRAHEQCLIAIEKASGGKC 142

Query: 236 IWDRYIS 242
           +W ++++
Sbjct: 143 LWQKFMT 149


>gi|29346773|ref|NP_810276.1| DNA Pol III epsilon chain [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338670|gb|AAO76470.1| DNA Pol III Epsilon Chain [Bacteroides thetaiotaomicron VPI-5482]
          Length = 277

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 78/210 (37%), Gaps = 15/210 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +   DRI+EI  +++  + ++  +T +  + P        +
Sbjct: 19  MKLNLKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEETKTMR--INPEMH-IPEAS 75

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI D  + D P+F  +        + +  +    N  +FD+  +  E  R   D  
Sbjct: 76  SAVHGIYDADVADCPTFKEVAKNVAR--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVDID 133

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              R    + +    H   +  L++  K Y    S    H A  D+    +V    +   
Sbjct: 134 MTKRKF--VDVQVIFHKMEQRTLSAAYKFY-CEKSLEDAHTAEADTRATYEVLKAQLDRY 190

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
             +      N+  F  E      N+    R
Sbjct: 191 PDLQ-----NDIAFLAEYSSFTKNVDFAGR 215


>gi|305667754|ref|YP_003864041.1| putative DNA polymerase III subunit epsilon [Maribacter sp.
           HTCC2170]
 gi|88707591|gb|EAQ99833.1| putative DNA polymerase III epsilon chain [Maribacter sp. HTCC2170]
          Length = 258

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 85/191 (44%), Gaps = 8/191 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K       FD+ETTG +  +DRI+EI  +++  + +K ++T+   + P  +    E 
Sbjct: 1   MELKLTRPICFFDLETTGTNVAHDRIVEISILKVFPNGNKESKTW--LVNPE-KDIPAEV 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +HGI++E + ++P+F  +  E +    + +      N +FD+  +  E+ R + D   
Sbjct: 58  IAIHGISNEKVANEPTFKELSKEVYLMIKDCDLGGFNSN-RFDIPLLAEEMLRADVDF-- 114

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             + + ++ +    H   +  L +  K Y         H A  D++   +V +  +    
Sbjct: 115 DMKNMVSVDVQTIFHKMEKRTLEAAYKFY-CDKDLTDAHSAEADTNATYEVLLSQLDRYP 173

Query: 180 QINFGFKTNED 190
           ++    K   +
Sbjct: 174 ELENNVKKLAE 184


>gi|170016856|ref|YP_001727775.1| DNA polymerase III, epsilon subunit [Leuconostoc citreum KM20]
 gi|169803713|gb|ACA82331.1| DNA polymerase III, epsilon subunit [Leuconostoc citreum KM20]
          Length = 177

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET   + +    + I    + D    +  F   + P     S     +HGIT
Sbjct: 1   MNFTALDFETA--NHEKHSAVSIALAVVRDNQVVDE-FYSLIKPETY-FSARNTAIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +   P F  I+      F  ++   +AHNA FD G +   L   +        ++DT
Sbjct: 57  AADVAQAPKFPEIWDMIAPLF-TEDKLVVAHNAAFDNGILKGTLDYYDIAE-PHYMLLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  +R+  P    + LN++ +  GIT+ H   H AL D+   +++ I
Sbjct: 115 VRSSRQLFPDFKNHKLNTVAQNLGITLDHH--HNALDDAVAAANILI 159


>gi|256827957|ref|YP_003156685.1| Exonuclease RNase T and DNA polymerase III [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577133|gb|ACU88269.1| Exonuclease RNase T and DNA polymerase III [Desulfomicrobium
           baculatum DSM 4028]
          Length = 177

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 8/167 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   DS  D    +G  ++      +R +   + P   + SP  + +HGI   
Sbjct: 7   YVAIDFETA--DSCRDSACAVGLTKVQGGEIVDRLYG-LIRPPRSRFSPFCVNVHGIHWS 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +KD P+F   + E   F    +    AHNA FD   + A        P      + T+ 
Sbjct: 64  DVKDAPAFREFWIENAGFLEGAD-FLAAHNASFDRSVLGACCTMAGL-PAPSLPFVCTVE 121

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +AR +       L  +C+  G+ ++H   H A  D+   + + +  +
Sbjct: 122 LARNQWNLRPTKLPDVCRHLGLDLNH---HHAGSDAEACARIVMAAV 165


>gi|260102518|ref|ZP_05752755.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           helveticus DSM 20075]
 gi|260083660|gb|EEW67780.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           helveticus DSM 20075]
 gi|328461804|gb|EGF34034.1| DNA polymerase III alpha chain [Lactobacillus helveticus MTCC 5463]
          Length = 177

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + D    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHFPESA--CSLALVMVRDNKIVDR-FYTVINPQ-MSFDARNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +K+ P+ + ++ +      +      AHNA+FD   +   L R N +      +IDT
Sbjct: 57  ADDVKNAPTMAEVWPKI-KGLYQPGMLVAAHNARFDTNVMRQSLARYNIEE-PHYLVIDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L+ ++   P    + L+++     + + H   H AL DS   + + I
Sbjct: 115 LATSKLFEPELPNHKLDTVSDALDVELWHH--HNALSDSEACARILI 159


>gi|183985197|ref|YP_001853488.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium marinum M]
 gi|183178523|gb|ACC43633.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium marinum M]
          Length = 329

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 85/214 (39%), Gaps = 25/214 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G    + R+I + A+ L        +    L P      P    +HG+T  
Sbjct: 16  WAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPG---VDPGPTHVHGLTAA 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D+P F+ I  +  +    +    +AHN  FD  F  A    +    L    ++ T+ 
Sbjct: 73  MLEDQPQFADIVGDLTELL--RGRTLVAHNVAFDYSF-LAAEAELADAELPVDSVMCTVE 129

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +G+  +    H A  D+ +LS +    +            
Sbjct: 130 LARRLELGIDNLRLETLAAHWGV--TQERPHDAFDDALVLSGILAPAL------------ 175

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
              +  +E    +P   + +R  P   R+T +EL
Sbjct: 176 ---QRARERDVWLPIHPVTRRRWP-NGRVTHDEL 205


>gi|161507225|ref|YP_001577179.1| DNA polymerase III alpha chain [Lactobacillus helveticus DPC 4571]
 gi|160348214|gb|ABX26888.1| DNA polymerase III alpha chain [Lactobacillus helveticus DPC 4571]
          Length = 177

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + D    +R F   + P         +++H IT
Sbjct: 1   MNFIAMDFETANHFPESA--CSLALVMVRDNKIVDR-FYTVINPQ-MSFDARNIQVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +K+ P+ + ++ +      +      AHNA+FD   +   L R N +      +IDT
Sbjct: 57  ADDVKNAPTMAEVWPKI-KGLYQPGMLVAAHNARFDTNVMRQSLARYNIEE-PHYLVIDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L+ ++   P    + L+++     + + H   H AL DS   + + I
Sbjct: 115 LATSKLFEPELPNHKLDTVSDALDVELWHH--HNALSDSEACAGILI 159


>gi|269964031|ref|ZP_06178337.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831250|gb|EEZ85403.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 249

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 80/202 (39%), Gaps = 27/202 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
               ++  +  D ETTGL+++ D I+ IG V   L   + + +    + PN R+ + E++
Sbjct: 52  TPLKEVPFVSVDFETTGLNAEEDAILTIGLVPFTLGRVQCSGSRHWVVNPN-RELNEESV 110

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGITD  +K+ P    I     D         + H    +  F N  L     + +  
Sbjct: 111 VIHGITDSEVKNAPQLEQILDAILDALA--GKIVVVHYKNIERQFFNNALLNSVGEGI-Q 167

Query: 121 SRIIDTL----SIARRKHPS----------SRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             ++DTL    +I RR+                 L    +RY +       H AL D+  
Sbjct: 168 FPVVDTLDIEYAIQRRECEGWLNKLKGKKPGSVRLGHARERYHLP--AYQPHHALTDALA 225

Query: 167 LSDVYIKMMVGGSQINFGFKTN 188
            +++        +Q+ + F  +
Sbjct: 226 TAELL------QAQLQYHFDGD 241


>gi|294815713|ref|ZP_06774356.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|294328312|gb|EFG09955.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 251

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 70/182 (38%), Gaps = 17/182 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    + FD+ETTG D +  RI+    VE        R    +L   G +   +A  
Sbjct: 12  MAWHGEPLVGFDLETTGTDPREARIVTAAVVEARAGEPVRRR--TWLADPGVRIPAQASA 69

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGIT E    +      +  E          +    +A+NA FD+  + AE++R     
Sbjct: 70  IHGITSERAAAEGRPAREVADEVAAELCGYWARGVPVVAYNAAFDLSLLAAEIRRYGLPS 129

Query: 118 L-------DPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           L           +ID  T+  A  ++   +  L ++   YG+ +     H A  D+    
Sbjct: 130 LSDRLGGRPTGPVIDPYTIDRAVDRYRKGKRTLEAVSAEYGVPLED--AHDATADALAAV 187

Query: 169 DV 170
            V
Sbjct: 188 RV 189


>gi|322411431|gb|EFY02339.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 820

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 10/159 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  +   +  V D+E T   +    II++G V +++  +   T+Q  + P+    S    
Sbjct: 1   MSNEMTRKYAVVDLEATNAGA-TAAIIQVGIV-IIEGKEVVETYQTDINPH-EPLSDHIK 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GITD  L   P FS +    ++  +  +  ++AHN KFD   +   L     + L P
Sbjct: 58  DLTGITDAQLAQAPEFSQVAKTIYELIS--DCVFVAHNVKFDANLLAEALFFEGYELLTP 115

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKH 158
              +DT+ +A+  +PS  +  L  L    G+ +     H
Sbjct: 116 --RVDTVELAQIFYPSLEKYTLGHLSAELGLELE--EAH 150


>gi|298498457|ref|ZP_07008264.1| gp39 [Vibrio cholerae MAK 757]
 gi|297542790|gb|EFH78840.1| gp39 [Vibrio cholerae MAK 757]
          Length = 188

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 19/179 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   N    I+ D ETTGLDS + RI+E+  +   D     + +   + P     SPE  
Sbjct: 4   MQALNLDNAIILDTETTGLDS-DARILEVSII---DAQTGIKLYSSLVNPLC-SISPEVT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD- 119
            +HGIT++ + D P+F  ++++   + +  ++    +N  FD       L+       + 
Sbjct: 59  AIHGITNDMVIDMPTFDKVWNDIKGYLS--DSVIYVYNLDFDYRMFAQSLRPFGYPVANL 116

Query: 120 ---PSRIIDTLSIARRKHPSSRND--------LNSLCKRYGITISHRSKHGALLDSHLL 167
                  +  +      + S   +        L + C +  +  S  + H AL D  + 
Sbjct: 117 VHFFGGGVCVMRWYANFYGSLCGNDVTPRFQRLTNACYQQDVDTSDLTAHRALADCEMT 175


>gi|116630207|ref|YP_815379.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           ATCC 33323]
 gi|282852827|ref|ZP_06262168.1| exonuclease [Lactobacillus gasseri 224-1]
 gi|116095789|gb|ABJ60941.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus gasseri ATCC 33323]
 gi|282555935|gb|EFB61556.1| exonuclease [Lactobacillus gasseri 224-1]
          Length = 320

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67
             + D+ETTGL    DRI E+G +++  + +   TF   +  P+  K      KL+GI +
Sbjct: 33  YTLIDVETTGLSPYRDRITEMGGLKVR-HGEVVATFSELVKFPDSNKVPTFITKLNGIDE 91

Query: 68  EFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             +++K         ++ +F        + +N  FD+ F+    ++ +   L+ +  +D 
Sbjct: 92  AAIEEKGLPVQEAIKKYREFIGSD--PIVGYNVNFDLNFVYDLAEKYHLTVLN-NDYVDV 148

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +AR  +P  R++ L     R  I  +   +H  L D      V+
Sbjct: 149 YRLARSFYPQERHNRLLDCMHRMNI--AENQEHRGLDDCLDTKKVF 192


>gi|167762354|ref|ZP_02434481.1| hypothetical protein BACSTE_00708 [Bacteroides stercoris ATCC
           43183]
 gi|167699997|gb|EDS16576.1| hypothetical protein BACSTE_00708 [Bacteroides stercoris ATCC
           43183]
          Length = 256

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 12/175 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +  +DRI+EI  +++  + ++  +T +  + P       EA
Sbjct: 1   MKLNLKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNEETKTMR--INPEMH-IPEEA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI DE + + P+F  +     +  + +  +    N  +FD+  +  E  R + D  
Sbjct: 58  SAVHGIYDEDVAECPTFKEVARNIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRADVDID 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYI 172
              R    + +    H   +  L++  K Y G  +     H A  D+    +V +
Sbjct: 116 MSRRKF--VDVQVIFHKMEQRTLSAAYKFYCGKNLED--AHTAEADTRATYEVLM 166


>gi|304396220|ref|ZP_07378102.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. aB]
 gi|304356589|gb|EFM20954.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. aB]
          Length = 223

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 89/245 (36%), Gaps = 28/245 (11%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET GL      +    A   +   +          P+ R  S +A+ +H IT
Sbjct: 1   MMFRVIDTETCGLQGGVVEV----ASVDVVDGRIVNPMSDLTLPD-RPISRQAMAVHRIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +  KP+       ++      +A ++AHNA FD   +                 I T
Sbjct: 56  EAMVAGKPTIEEAIPRYY-----GSAFYVAHNASFDRRMLPEMY----------GEWICT 100

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMMVGGSQINF 183
           + +AR+  P  +    +L     + ++  +    H AL D ++ + + I++M   S  + 
Sbjct: 101 MQLARQLWPGIKYGNQALRHSLKLDVTPPAELHAHRALYDCYVTAALLIRIME-TSGWSA 159

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG---KNAIWDRY 240
                  +   +    +P      +   +  R     L      +  L    + A+ ++Y
Sbjct: 160 SEMIVRSQPAAQRDDILPFGKYRGQAIAVIARKDPGYLKWVLNNVSDLRPPLRQAL-NKY 218

Query: 241 ISSNQ 245
           +S +Q
Sbjct: 219 LSESQ 223


>gi|282877400|ref|ZP_06286223.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           buccalis ATCC 35310]
 gi|281300452|gb|EFA92798.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           buccalis ATCC 35310]
          Length = 194

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 66/170 (38%), Gaps = 11/170 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   +S    +  +G V + +   T+  +   + P      P  + +HGI   
Sbjct: 33  FAAIDFETA--NSCRSSVCSVGVVIVENGKITDSYYH-LIRPYPNYYHPRNIAVHGILPS 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +D P+F  ++++            +AHN  FD   + A         L+      TL 
Sbjct: 90  DTQDAPTFPEVWAQIAPLIKH--LPLVAHNKAFDESCLKACFATYGMAYLN-YPFYCTLI 146

Query: 129 IARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +RR    H  + + L+++    G  + +   H AL D+   S + + ++
Sbjct: 147 ASRRVFCHHELANHQLHTVAAHLGYNLVNH--HHALADAEACSVIALNIL 194


>gi|21684668|gb|AAM09079.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps]
          Length = 157

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 5/153 (3%)

Query: 37  YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
              T   F  ++ P  +  +  A  +HG+ DEFL  +P+F +I      F     +  + 
Sbjct: 4   GRITGNYFHAYINP-LQSMTRGAQAVHGLRDEFLATQPTFCAIAQGLLFFL--CRSTLVG 60

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRI--IDTLSIARRKHPSSRNDLNSLCKRYGITISH 154
           HN  FD+ F++A L      P        IDT+    ++    R  L+S C   G+    
Sbjct: 61  HNLSFDLNFLDAGLASAGFMPTARYCHGVIDTMPHLAQRGSRRRFSLDSCCDMLGVRRED 120

Query: 155 RSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           R++HGAL D+ LL++ ++        I +  +T
Sbjct: 121 RARHGALEDAVLLAEAFVVAKRTQPPIGYQCET 153


>gi|237718360|ref|ZP_04548841.1| DNA Pol III Epsilon Chain [Bacteroides sp. 2_2_4]
 gi|229452293|gb|EEO58084.1| DNA Pol III Epsilon Chain [Bacteroides sp. 2_2_4]
          Length = 243

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 15/210 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +   DRI+EI  +++  + ++  +T +  + P        +
Sbjct: 1   MKLNLKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTLR--INPEMH-IPEAS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI D  + D P+F  +        + +  +    N  +FD+  +  E  R   D  
Sbjct: 58  SAIHGIYDADVVDCPTFKEVAKNIAR--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVDID 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              R    + +    H   +  L++  K Y    +    H A  D+    +V    +   
Sbjct: 116 MTKRKF--VDVQVIFHKMEQRTLSAAYKFY-CDKNLEDAHTAEADTRATYEVLKAQLDRY 172

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
           S +      N+  F  +      N+    R
Sbjct: 173 SDLQ-----NDIAFLADYSSFSKNVDFAGR 197


>gi|255531786|ref|YP_003092158.1| exonuclease RNase T and DNA polymerase III [Pedobacter heparinus
           DSM 2366]
 gi|255344770|gb|ACU04096.1| Exonuclease RNase T and DNA polymerase III [Pedobacter heparinus
           DSM 2366]
          Length = 328

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 11/188 (5%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           ++ N  R + F D+ETTG++   DRI+EI  ++ + D S+  +T +  + P        A
Sbjct: 1   MKLNLKRPLAFFDLETTGVNVGADRIVEIAILKAMPDGSELIKTMR--INPE-MPIPLYA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI DE + ++P F  + +E  DF    +A+   +N  +FD+  +  E  R   D  
Sbjct: 58  SLIHGIYDEHIANEPIFKEVATELADFIG--DADLAGYNSNRFDIPVLLEEFLRAGVDFD 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              R    + +    H   +  L +  K Y       + H A  D      V +  +   
Sbjct: 116 MSDRKF--VDVQNIFHQMEQRTLRAAYKFY-CNKDIINAHSAEADITATYQVLLAQIERY 172

Query: 179 SQINFGFK 186
             I+F  K
Sbjct: 173 KDIDFEDK 180


>gi|187777136|ref|ZP_02993609.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC
           15579]
 gi|187774064|gb|EDU37866.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC
           15579]
          Length = 309

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIIEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +FN  N   IAHNA FD+  + + L+  N   +     I T
Sbjct: 58  PHMVQDELEFDKIWGKIKGYFN--NNLVIAHNASFDMSVLRSTLELYNIK-MPSFEYICT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G    H   H AL D+   S++ + +
Sbjct: 115 MKLSKNFYSNIDNAKLNTVNNFLGYKFQH---HDALADAMACSNILLNI 160


>gi|288941633|ref|YP_003443873.1| ribonuclease T [Allochromatium vinosum DSM 180]
 gi|288897005|gb|ADC62841.1| ribonuclease T [Allochromatium vinosum DSM 180]
          Length = 226

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 77/195 (39%), Gaps = 17/195 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G D++   ++E+ AV +   S    +   T    + P  G +  P
Sbjct: 14  RFRGFLPVVVDVETAGFDAQRHALLEVAAVIIRQRSDGLLEPAPTLACHVLPFVGSELDP 73

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
            AL  +GI         + +  +   I +                + HNA FD+GFI A 
Sbjct: 74  RALAFNGIDPHHPFRDAISEHDALERILTPIRKAVKSTGCNRAILVGHNAHFDLGFIKAA 133

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           ++R    ++P     + DT+++        +  L    +  G+   H   H A  D+   
Sbjct: 134 VERTGYKRNPFHAFSVFDTVTLGGLMF--GQTVLAKASRAAGLHWKHSEAHSAAYDAEQT 191

Query: 168 SDVYIKMMVGGSQIN 182
           + ++  ++    +++
Sbjct: 192 ARLFCAVVNRWRELD 206


>gi|313894242|ref|ZP_07827807.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441066|gb|EFR59493.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 862

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+E+TG D+  DRII+I A+ + +  +   TF+ F+ P       ++ ++HG +D +
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLETFERFINPG--VPVGQSEEVHGFSDAY 552

Query: 70  LKDKPSFSS-IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L++     + +   F +F   +NA  + HN  +DV     EL R N    +   I DTL 
Sbjct: 553 LQEHGEEPAIVLQAFKEF--SKNAIIVGHNVNYDVTIFTNELARHNLGNPEFKAIYDTLD 610

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           I RR +P+   + L  L   +   I H   H A+ D    + + I  +
Sbjct: 611 IYRRFYPNLPNHKLGFLASEF--PIHHEPTHNAMDDILATAQLLIYAV 656


>gi|302879448|ref|YP_003848012.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
 gi|302582237|gb|ADL56248.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
          Length = 303

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 20/173 (11%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPEAL 60
           +R +V D ETTG++S  D IIE+G V         +  +   +F     P G    PE+ 
Sbjct: 40  LRGVVVDTETTGINSAQDAIIELGMVLFEYDPDTGEAGRVLGSFDQLEDP-GMAIPPEST 98

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++HGITDE ++ K    +  + F D      +  IAHN+KFD  F+   L        + 
Sbjct: 99  EVHGITDEMVQGKRIDDAAVAAFLDGV----SVVIAHNSKFDRVFLEKRLS-----VFET 149

Query: 121 SRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                +L+    R        L+ +  +YG        H A  D + L ++  
Sbjct: 150 LPWGCSLAQVDWRAEGIGSAKLDYISYQYGFFYE---AHRAEGDCYALLEILQ 199


>gi|285018765|ref|YP_003376476.1| ribonuclease t (exoribonuclease t) (rnase t) protein [Xanthomonas
           albilineans GPE PC73]
 gi|283473983|emb|CBA16484.1| probable ribonuclease t (exoribonuclease t) (rnase t) protein
           [Xanthomonas albilineans]
          Length = 217

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 17/181 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G D     ++EI  + +            T    + P  G    P++L++ 
Sbjct: 26  PVVVDVETGGFDWNRHALLEIAVIPIEMDAAGKLSPGDTASAHVVPAPGTVIDPKSLEIT 85

Query: 64  GI-TDEFLKDKPSFSSIFSEFW-------DFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  D   +            +         +  Q A  + HNA FD+ F+NA + R   
Sbjct: 86  GIVLDHPFRLAKPEREALEHVFTPVRAAVKKYGCQRAILVGHNAHFDLNFLNATVARCGH 145

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT+++A   +   +  L    +  G   S    H A+ D+   + ++ K
Sbjct: 146 KRNPFHPFSVFDTVTLAGIAY--GQTVLARAVQAAGFEWSAADAHSAVYDTEQTARLFCK 203

Query: 174 M 174
           +
Sbjct: 204 I 204


>gi|149371249|ref|ZP_01890735.1| DNA Pol III Epsilon Chain [unidentified eubacterium SCB49]
 gi|149355387|gb|EDM43946.1| DNA Pol III Epsilon Chain [unidentified eubacterium SCB49]
          Length = 257

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 72/176 (40%), Gaps = 8/176 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K       FD+ETTG++   DRI+EI  +++        +F   + P          
Sbjct: 1   MQLKLSKPICFFDLETTGINIAKDRIVEIAILKVFPNGN-KESFVWKVNPTI-PIPKVTS 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LD 119
            +HGITDE + ++P+F  +  + +    + +      N +FD+  +  EL R   D  L 
Sbjct: 59  DIHGITDEMVVNEPTFKELAPKVFALIKDSDLAGFNSN-RFDIPLLAEELLRAEIDYDLK 117

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +  +D  +I    H   +  L +  K Y         H A  D++   +V    +
Sbjct: 118 KAASVDVQTI---FHKKEKRTLEAAYKFY-CDEDLLDAHSAAADTNATFEVLKAQL 169


>gi|254228313|ref|ZP_04921740.1| DNA polymerase III subunit epsilon [Vibrio sp. Ex25]
 gi|262394378|ref|YP_003286232.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|151939119|gb|EDN57950.1| DNA polymerase III subunit epsilon [Vibrio sp. Ex25]
 gi|262337972|gb|ACY51767.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
          Length = 248

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 86/196 (43%), Gaps = 27/196 (13%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++  +  D ETTGL+++ D I+ IG V   +D  + + +    + PN R+ + E++ +HG
Sbjct: 55  EVPFVSVDFETTGLNAEEDAILTIGLVPFTIDRVQCSGSAHWVVNPN-RELNEESVVIHG 113

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD  +K+ P  + I  E  D  + +    + H    +  F N  L     + +    ++
Sbjct: 114 ITDSEVKNAPQLTHILGEILDALSGK-VVLV-HYKNIERQFFNNALLNSIGEGIH-FPVV 170

Query: 125 DTL----SIARRKHPSSRND----------LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           DTL    +I RR+     N           L    +RY   +     H AL D+   +++
Sbjct: 171 DTLDIEHAIQRRECSGLFNKLKGKKPGSVRLGHARERY--RLPAYQPHHALTDALATAEL 228

Query: 171 YIKMMVGGSQINFGFK 186
           +       +Q+ + F 
Sbjct: 229 F------QAQLQYHFN 238


>gi|229005847|ref|ZP_04163541.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock1-4]
 gi|228755311|gb|EEM04662.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock1-4]
          Length = 286

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 9/146 (6%)

Query: 29  IGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFN 88
           + AV   ++   ++ F  F+ P  R        L GIT+  +   P+   +   F  F  
Sbjct: 1   MAAVRYRNHELADQ-FVSFVNPE-RFIPNRITSLTGITNYRVSGAPTIQEVLPLFLAFLG 58

Query: 89  EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKR 147
           E     +AHNA FD+ F+ +    + + P   + +IDT+ +A+R       + L +L + 
Sbjct: 59  ED--TIVAHNASFDMRFLKSNANML-RLPEPKNIVIDTVFLAKRYMKHAPNHKLETLKRM 115

Query: 148 YGITISHRSKHGALLDSHLLSDVYIK 173
            GI +S    H AL D    + VY K
Sbjct: 116 LGIRLS---SHNALDDCITCAAVYQK 138


>gi|222152791|ref|YP_002561968.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus uberis 0140J]
 gi|222113604|emb|CAR41463.1| putative ATP-dependent DNA helicase [Streptococcus uberis 0140J]
          Length = 831

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 24/191 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI++ + +  V D+E T        II++G V +L   +   TFQ  + P+    S    
Sbjct: 12  MIKEFEKKYAVIDLEAT-NAGSTASIIQVGIV-ILQGGEIRETFQTDVNPH-EPLSEHIK 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GI+DE L   P FS +    +D     +  ++AHN KFD   +   L     +   P
Sbjct: 69  SLTGISDEQLSKAPDFSQVAKTIYDLI--HDCIFVAHNVKFDANLLAESLFFEGFELRTP 126

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH-------LLSDVYI 172
              IDT+ +A+  +P+  + +L+ L    G+          L D+H         + +++
Sbjct: 127 --RIDTVELAQVFYPTFEKYNLSVLSSELGLD---------LSDAHTAIADAIATAKLFL 175

Query: 173 KMMVGGSQINF 183
           K+    SQI  
Sbjct: 176 KLQEKISQIPL 186


>gi|163751907|ref|ZP_02159120.1| exonuclease [Shewanella benthica KT99]
 gi|161328190|gb|EDP99355.1| exonuclease [Shewanella benthica KT99]
          Length = 227

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 83/184 (45%), Gaps = 15/184 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLH 63
           ++ + I  D+E TGL+  +D+I+ IG + + +     ++  Q  +  +G     ++  +H
Sbjct: 38  SQSKLIALDLEMTGLNPNHDQILSIGLIPIENNLLLLDKAEQKLIKVDGG--VGQSAAIH 95

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI D+ L+D        S F +         +AH+A  D+ F+   + +   +P+     
Sbjct: 96  GILDKHLQDAIDIEEAISWFLE--KTLGKVLVAHHAPLDINFLQNAMSKTVGEPVKLCA- 152

Query: 124 IDTLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           IDTL++ RR+     +        L +   RYG+ +   + H AL+D+    ++ +    
Sbjct: 153 IDTLAVERRRLLRKHDVLKEGSLRLGACRTRYGLPVY--AAHNALVDALACGELLLAQTA 210

Query: 177 GGSQ 180
              Q
Sbjct: 211 AIGQ 214


>gi|313204261|ref|YP_004042918.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter
           propionicigenes WB4]
 gi|312443577|gb|ADQ79933.1| Exonuclease RNase T and DNA polymerase III [Paludibacter
           propionicigenes WB4]
          Length = 255

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 10/177 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  + K   + FD+ETTG +   DRI+EI   ++    +   T  + + P        + 
Sbjct: 1   MKLQLKNPIVFFDLETTGTNIVTDRIVEIAYHKVSPNGR-EETKSIRINPEMH-IPESSS 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
            +HGI D  + D P+F ++  E     + +  +   +N  +FD+  +  EL R + D  L
Sbjct: 59  AIHGIYDADVADCPTFKAVAKEIVR--DIEGCDLAGYNSNRFDIPLLAEELLRADIDIDL 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              + +D   +    H   +  L +  K Y         HGA  D+    +V    +
Sbjct: 117 MKRKFVDVQVV---FHKMEQRTLGAAYKFY-CDKDLVGAHGAEADTLATYEVLKAQL 169


>gi|308049484|ref|YP_003913050.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
 gi|307631674|gb|ADN75976.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
          Length = 249

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 19/186 (10%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +++  +  D ETTG++   D II IG V         +    ++    R  + E++ +HG
Sbjct: 55  SQVPFVALDFETTGMNPDQDAIISIGLVPFTQQRIQCKGSAHWIVNPNRPLNEESVVIHG 114

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT   L+  P    +  +  D         + H  + +  F++  L R          ++
Sbjct: 115 ITHSDLEQAPDLEVVLDQVLDALA--GKIVVVHYKQIEREFLDRAL-RARLGEGIRFPVV 171

Query: 125 DTLSI-----------ARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           DTL I              +    +     L    +RYG+       H AL D+   +++
Sbjct: 172 DTLDIEAAIQHRACQGWFNRLRGKKPDSVRLGRARERYGLP--AYQPHHALTDALATAEL 229

Query: 171 YIKMMV 176
               + 
Sbjct: 230 LQAQLA 235


>gi|325279748|ref|YP_004252290.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
 gi|324311557|gb|ADY32110.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
          Length = 260

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD+ETTG++   DRI+EI  +++    K  +   + + P G     EA  +HGI DE
Sbjct: 9   IVFFDLETTGINIAKDRIVEISVLKVYPNGKEEQK-TIRVNP-GMHIPEEASAIHGIYDE 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +KD P F  I  E   +   +  +   +N  +FD+  +  E  R   D     R    +
Sbjct: 67  DVKDAPMFKHIARELAHYI--EGCDLGGYNSNRFDIPLLAEEFLRAEVDFDMSKRKF--V 122

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +    H   +  L++    Y         H A  D+    +V +  +
Sbjct: 123 DVQTIFHKMEQRTLSAAYHFY-CDKCLEDAHTAAADTMATYEVLMAQL 169


>gi|160882256|ref|ZP_02063259.1| hypothetical protein BACOVA_00202 [Bacteroides ovatus ATCC 8483]
 gi|260173820|ref|ZP_05760232.1| DNA Pol III epsilon chain [Bacteroides sp. D2]
 gi|299146573|ref|ZP_07039641.1| exonuclease [Bacteroides sp. 3_1_23]
 gi|315922083|ref|ZP_07918323.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156112345|gb|EDO14090.1| hypothetical protein BACOVA_00202 [Bacteroides ovatus ATCC 8483]
 gi|298517064|gb|EFI40945.1| exonuclease [Bacteroides sp. 3_1_23]
 gi|313695958|gb|EFS32793.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 259

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 15/210 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +   DRI+EI  +++  + ++  +T +  + P        +
Sbjct: 1   MKLNLKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTLR--INPEMH-IPEAS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI D  + D P+F  +        + +  +    N  +FD+  +  E  R   D  
Sbjct: 58  SAIHGIYDADVVDCPTFKEVAKNIAR--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVDID 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              R    + +    H   +  L++  K Y    +    H A  D+    +V    +   
Sbjct: 116 MTKRKF--VDVQVIFHKMEQRTLSAAYKFY-CDKNLEDAHTAEADTRATYEVLKAQLDRY 172

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
           S +      N+  F  +      N+    R
Sbjct: 173 SDLQ-----NDIAFLADYSSFSKNVDFAGR 197


>gi|326772455|ref|ZP_08231739.1| DNA polymerase III, epsilon subunit [Actinomyces viscosus C505]
 gi|326637087|gb|EGE37989.1| DNA polymerase III, epsilon subunit [Actinomyces viscosus C505]
          Length = 280

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 60/149 (40%), Gaps = 4/149 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL    D I+E+  V      +  R++   + P G         +HG+  E
Sbjct: 42  YAVVDLETTGLSPTTDSILEVALVLTDAAGRVERSWSTLIDP-GAGVDVGPTHIHGLVAE 100

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDTL 127
            L   P F  +        +      +AHNA+FDVGF+  EL  R   D       + T+
Sbjct: 101 ELIGAPGFDEVADLLVA--DLAGRAVVAHNARFDVGFLTQELGTRGLLDRGARVPRVCTM 158

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRS 156
             AR    +    L + C+  G+ I    
Sbjct: 159 EWARHFMTTPSRRLTTCCEVAGVEIGRHH 187


>gi|254392979|ref|ZP_05008143.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|197706630|gb|EDY52442.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 240

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 70/182 (38%), Gaps = 17/182 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    + FD+ETTG D +  RI+    VE        R    +L   G +   +A  
Sbjct: 1   MAWHGEPLVGFDLETTGTDPREARIVTAAVVEARAGEPVRRR--TWLADPGVRIPAQASA 58

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGIT E    +      +  E          +    +A+NA FD+  + AE++R     
Sbjct: 59  IHGITSERAAAEGRPAREVADEVAAELCGYWARGVPVVAYNAAFDLSLLAAEIRRYGLPS 118

Query: 118 L-------DPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           L           +ID  T+  A  ++   +  L ++   YG+ +     H A  D+    
Sbjct: 119 LSDRLGGRPTGPVIDPYTIDRAVDRYRKGKRTLEAVSAEYGVPLED--AHDATADALAAV 176

Query: 169 DV 170
            V
Sbjct: 177 RV 178


>gi|153808235|ref|ZP_01960903.1| hypothetical protein BACCAC_02523 [Bacteroides caccae ATCC 43185]
 gi|149129138|gb|EDM20354.1| hypothetical protein BACCAC_02523 [Bacteroides caccae ATCC 43185]
          Length = 259

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 10/177 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +   DRI+EI  +++  + ++  +T +  + P        +
Sbjct: 1   MKLNLKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTLR--INPEMH-IPEAS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI D  + D P+F  +        + +  +    N  +FD+  +  E  R   D  
Sbjct: 58  SAVHGIYDADVADCPTFKEVAKNIAR--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVDID 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              R    + +    H   +  L++  K Y    +    H A  D+    +V    +
Sbjct: 116 MSKRKF--VDVQVIFHKMEQRTLSAAYKFY-CEKNLEDAHTAEADTRATYEVLKAQL 169


>gi|325142622|gb|EGC65013.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           961-5945]
          Length = 405

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 8/123 (6%)

Query: 48  LCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           + P  +      + L GI+D  + D P F+ I  E +     +    +AHN++FD  F+ 
Sbjct: 2   VNPQ-KPIPQFVVGLTGISDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLK 58

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            E  R+      P  ++ ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   
Sbjct: 59  HEFHRVGIGFSSP--VLCSVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSA 114

Query: 167 LSD 169
           L D
Sbjct: 115 LCD 117


>gi|319954745|ref|YP_004166012.1| exonuclease rnase t and DNA polymerase iii [Cellulophaga algicola
           DSM 14237]
 gi|319423405|gb|ADV50514.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga algicola
           DSM 14237]
          Length = 220

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 15/180 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D ETTG D  NDRI+ IGAV+L+         F+VF+    +    +A  +HGI  
Sbjct: 36  YTVLDTETTGFDYSNDRILCIGAVKLVQQQIAIRDGFEVFV--TQQVYGKDAAPIHGILK 93

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                + +      +F  +    N+  IAH+A FD+  IN  L R     L  +  +DT 
Sbjct: 94  NSTVPRVTELEALEQFITYVG--NSVIIAHHAIFDLNMINNALLRNGLPEL-KNTYLDTS 150

Query: 128 SIARRKH-------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            + ++               L+ L  ++ I  S + +H A+ D+++ + +++K++    +
Sbjct: 151 HLYKKTIIRSNLITRKENYTLDELADKFSI--SKKDRHTAMGDAYITAILFLKIISKLKE 208


>gi|227538997|ref|ZP_03969046.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241200|gb|EEI91215.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 203

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 81/207 (39%), Gaps = 12/207 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D E     +  + +  +G V  +D       F   + P   +   +  ++HGI  +
Sbjct: 6   FIAIDFELA--TAAYNSVCSVGIVR-VDQGVITDEFYSLVKPPKNEYMWQTTRVHGIKPK 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRIID 125
              D P+F  I+ +  D    QN + +AHN KFD   ++  ++    D  +   P     
Sbjct: 63  DTADAPTFEEIYPKIKDLL--QNKKMVAHNEKFDREVLSKTMKACGLDYRELHLPVMWEC 120

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           T  I R K    +  LN  C+  GI ++H   H AL D+   + +Y+K      ++    
Sbjct: 121 TSKIYRDKG-FKKTKLNLCCEIMGIDLNH---HEALSDAKAAAFLYLKQNEVTQELLDRV 176

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPL 212
              E+   + ++          RD  +
Sbjct: 177 FPAEELLIQPDEVAKKGEPDNGRDGVV 203


>gi|149195052|ref|ZP_01872144.1| Exonuclease [Caminibacter mediatlanticus TB-2]
 gi|149134765|gb|EDM23249.1| Exonuclease [Caminibacter mediatlanticus TB-2]
          Length = 293

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 27/184 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I+ D ETTG + + DRI ++  + L +  +        + P     S EA+ +H IT
Sbjct: 1   MKIIILDTETTG-NKQEDRICQLSYLVLNEDLEIEEIHNELVKPPI-PISYEAMAVHHIT 58

Query: 67  DEFLKDKP--SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +E ++DKP   F++ +    +  + +N   + HN++FD+  +    ++   +P    ++I
Sbjct: 59  NEMVEDKPQIKFTNSYKRLKELNSPEN-IIVIHNSEFDLEML----RKEGFNPF--FKLI 111

Query: 125 DTLSIARRKHPSSRNDLN-------------SLCKRYGITISHRSKHGALLDSHLLSDVY 171
           DT  + +   P  +  L               +CK+Y ITI   + H AL D  +L  ++
Sbjct: 112 DTFRVLKHILPDGKFGLQYNRYALGLYKKEKDICKKYNITI---NAHDALGDVVVLYLLF 168

Query: 172 IKMM 175
             ++
Sbjct: 169 EYIL 172


>gi|238854851|ref|ZP_04645181.1| DNA polymerase III alpha chain [Lactobacillus jensenii 269-3]
 gi|260664138|ref|ZP_05864991.1| DNA polymerase subunit III alpha [Lactobacillus jensenii SJ-7A-US]
 gi|282933929|ref|ZP_06339277.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
 gi|313472352|ref|ZP_07812844.1| exonuclease [Lactobacillus jensenii 1153]
 gi|238832641|gb|EEQ24948.1| DNA polymerase III alpha chain [Lactobacillus jensenii 269-3]
 gi|239529790|gb|EEQ68791.1| exonuclease [Lactobacillus jensenii 1153]
 gi|260562024|gb|EEX27993.1| DNA polymerase subunit III alpha [Lactobacillus jensenii SJ-7A-US]
 gi|281302018|gb|EFA94272.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
          Length = 177

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET     ++     +  V + +    +R F   + P         + +H IT
Sbjct: 1   MNFIAMDFETANRHPESA--CSLALVMVRNNKIADR-FYTVINPQ-MPFDGRNISVHQIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +KD P+ + ++ +  D   +      AHNAKFD   +   L R +        +IDT
Sbjct: 57  PSDVKDAPTMAEVWPKIKD-LYQPGMLVAAHNAKFDANVLKMSLARYDIAE-PHYLVIDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L  +R   P    + LN++ +   + + H   H AL DS   + + IK
Sbjct: 115 LKTSRLFEPDLPNHKLNTVSEALDVELWHH--HNALSDSEACAGILIK 160


>gi|288799990|ref|ZP_06405449.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333238|gb|EFC71717.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
          Length = 163

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +S+   +  IG V + +   T+  +   + P     S    K+HG+T  
Sbjct: 4   FVAIDFETA--NSERSSVCSIGIVIVRNGVITDSFYST-IQPEPNYYSYWCTKVHGLTKS 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             ++ P F  I+ +        N  ++AHN++FD   + A   R+ +         DTL+
Sbjct: 61  DTEESPCFHEIWKQIEPKIG--NLPFVAHNSRFDESCLKAVF-RVYQMDYPDYIFFDTLA 117

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ARR  P   N  L+++ +  G  + +   H AL D+   + + ++++
Sbjct: 118 AARRVLPHLPNHQLHTVAQECGYCLDNH--HHALADAEACAHIAMQIL 163


>gi|157736758|ref|YP_001489441.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|315635934|ref|ZP_07891196.1| exonuclease [Arcobacter butzleri JV22]
 gi|157698612|gb|ABV66772.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|315479913|gb|EFU70584.1| exonuclease [Arcobacter butzleri JV22]
          Length = 202

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 11/175 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64
           K   + FD ETTGL+ K D II IGAV + D +   ++ F  F+ P   K   EA+K+H 
Sbjct: 29  KDEYVCFDCETTGLNPKKDDIISIGAVIIKDNTIISSKKFVKFIKPKT-KLQAEAIKVHH 87

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRI 123
           I +  L +      +  EF +F   +    + +  +FD+  IN  L+ ++     + +  
Sbjct: 88  IRECDLNNANDIDLVIEEFLEFIGNR--TLVGYFLEFDISMINKYLKPKLGITLPNKTLE 145

Query: 124 IDTLSIARRKH--PSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  +    +    P    DL  NS+ +   I      KH A  D+ + + ++IK+
Sbjct: 146 VSEIYHDYKIEIIPQGHIDLRFNSIMEELEIP--SLGKHDAFNDALMTAMIFIKL 198


>gi|28377661|ref|NP_784553.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum WCFS1]
 gi|254555842|ref|YP_003062259.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum JDM1]
 gi|28270494|emb|CAD63396.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum WCFS1]
 gi|254044769|gb|ACT61562.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum JDM1]
          Length = 173

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 9/161 (5%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D ET   ++K D    +    + +   ++  F   + P         +++HGI +  + D
Sbjct: 2   DFETA--NAKRDSACSLALTVVRNNQISDE-FYTLIKPES-DFFWRNVQIHGIHEADVAD 57

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P F  ++     FF +++   IAHNA FD+G +   L             +DT+  ++R
Sbjct: 58  APKFPDVWQHIEPFF-QRDRLVIAHNAPFDIGVLRNTLAHYGISA-PEYLSMDTVKTSQR 115

Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P    + L+++C+   I + H   H AL DS   +++ +
Sbjct: 116 FYPELPNHKLDTVCQALDIDLQHH--HNALDDSLACANILL 154


>gi|332291046|ref|YP_004429655.1| Exonuclease RNase T and DNA polymerase III [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169132|gb|AEE18387.1| Exonuclease RNase T and DNA polymerase III [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 257

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 10/173 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K       FD+ETTG++   DRI+EI  +++    +    F   + P          
Sbjct: 1   MQLKITRPICFFDLETTGINVAKDRIVEISILKVFPDGR-EEEFTERINPT-VPIPAATT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI+D  + DKP+F++   + +D   + +      N +FD+  +  EL R   D    
Sbjct: 59  AVHGISDADVVDKPTFAARAKDVYDIIKDADLAGFNSN-RFDIPLLVEELLRSGIDFDMK 117

Query: 121 SRI-IDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVY 171
           +R  ID  +I    H   +  L +  K Y G  +++   H A  D+    +V 
Sbjct: 118 NRNAIDVQNI---FHKMEQRTLVAAYKFYCGKDLTN--AHSASADTWATYEVL 165


>gi|319901725|ref|YP_004161453.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
           P 36-108]
 gi|319416756|gb|ADV43867.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
           P 36-108]
          Length = 256

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 76/178 (42%), Gaps = 12/178 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG +  +DRI+EI  +++  + ++  +T +  + P       EA
Sbjct: 1   MKLNLKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNEEAKTMR--INPEMH-IPAEA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI DE +   P+F  +     +  + + ++    N  +FD+  +  E  R   D  
Sbjct: 58  SAVHGIYDEDVAKCPTFKEVARNIAN--DIEGSDLAGFNSNRFDIPVLAEEFLRAGVDID 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMM 175
              R    + +    H   +  L++  K Y G  +     H A  D+    +V +  +
Sbjct: 116 MSRRKF--VDVQVIFHKMEQRTLSAAYKFYCGKNLED--AHTAEADTRATYEVLMAQL 169


>gi|296533190|ref|ZP_06895816.1| exonuclease RNase T and DNA polymerase III [Roseomonas cervicalis
           ATCC 49957]
 gi|296266484|gb|EFH12483.1| exonuclease RNase T and DNA polymerase III [Roseomonas cervicalis
           ATCC 49957]
          Length = 304

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 87/242 (35%), Gaps = 33/242 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK--TNRTFQVFLCPNGRKNSPEALKLHG 64
           +V D+ETTGLD   D IIE+  +     LD +       F     P  R   PE   L G
Sbjct: 51  LVLDVETTGLDHGQDEIIELAMLPFTYGLDGTLYSVGEAFSRLRQP-ARPIPPEVTALTG 109

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +TD  +  + SF+    E   F     A  IAHNA FD  F  A        P   S  +
Sbjct: 110 LTDAMVAGQ-SFTP--EEVAAFIGPA-ALVIAHNAGFDRRFAEAFCPDFAAKPWACS--L 163

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV------------YI 172
             +  A       R  L  L  R+G+       H A+ D     ++             +
Sbjct: 164 HGVDWAAEGFEGRR--LGDLAARHGLFFDG---HRAVHDCQATLEILARPLPRSGVPALV 218

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL----LKRDKPLFTRITKEELDEHDKTI 228
           +++    + ++        F  +++              R +  +  + +E+L+     +
Sbjct: 219 RLLEAARRPSWRIWAEGAPFAAKDRLKARGYRWNGEANGRPRAWYIEVAEEQLEAETAFL 278

Query: 229 QT 230
           ++
Sbjct: 279 RS 280


>gi|329667930|gb|AEB93878.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii DPC
           6026]
          Length = 320

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67
             + D+ETTGL    DRI E+G +++  + +   TF   +  P+  K      KL+GI +
Sbjct: 33  YTLIDVETTGLSPYRDRITEMGGLKVR-HGEVVATFSELVKFPDSNKVPAFITKLNGIDE 91

Query: 68  EFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             +++K         ++ +F        + +N  FD+ F+    ++ +   L+ +  +D 
Sbjct: 92  ATIEEKGLPVQEAIKKYREFIGSD--PIVGYNVNFDLNFVYDLAEKYHLTVLN-NDYVDV 148

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +AR  +P  +++ L     R  + I+   +H  L D      V+ +      Q
Sbjct: 149 YRLARSFYPQEQHNRLLDCMHR--LDIAETQEHRGLDDCLDTKKVFDEFHRLFRQ 201


>gi|238791781|ref|ZP_04635418.1| Exodeoxyribonuclease 10 [Yersinia intermedia ATCC 29909]
 gi|238728885|gb|EEQ20402.1| Exodeoxyribonuclease 10 [Yersinia intermedia ATCC 29909]
          Length = 219

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 79/172 (45%), Gaps = 23/172 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   + D ET GL      I+E+ +++L+D +  N      + P+ R  S +A+ +H IT
Sbjct: 1   MYFRIIDTETCGL---AGGIVEVASIDLVDGALAN-PMSDLISPD-RPISIDAMVIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E ++ KP  +     +     + +  ++AHNA FD G +          P    + I T
Sbjct: 56  EEMVEGKPRIAVAIRRY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICT 100

Query: 127 LSIARRKHPSSRNDLNSL--CKRYGITISHR-SKHGALLDSHLLSDVYIKMM 175
           L +AR  +P  ++    L    R  +++      H AL D ++ + +  ++M
Sbjct: 101 LKLARMLYPDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVTAALLQRIM 152


>gi|296110637|ref|YP_003621018.1| exonuclease [Leuconostoc kimchii IMSNU 11154]
 gi|295832168|gb|ADG40049.1| exonuclease [Leuconostoc kimchii IMSNU 11154]
          Length = 177

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + +    + I A+ ++ +++    F   + P     S     +HG+ 
Sbjct: 1   MNFIAMDFETA--NHEKHSAVSI-AIAVVRHNQVVDKFYSLIKPETY-FSARNTAVHGLK 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +   P F  ++      F  ++   +AHNA FD   +   L     +      ++DT
Sbjct: 57  ESDVAQAPKFPEVWKIIAPLFK-EDKLVVAHNAAFDNSILKGTLAYYGIEE-PHYMLLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  +R+  P    + LN++ + +GIT+ H   H AL D+   +++ I
Sbjct: 115 VRTSRKLLPDFKNHKLNTVAENFGITLDHH--HNALDDAVAAANILI 159


>gi|260591576|ref|ZP_05857034.1| exonuclease [Prevotella veroralis F0319]
 gi|260536376|gb|EEX18993.1| exonuclease [Prevotella veroralis F0319]
          Length = 164

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 8/168 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   +  +G V +    +   +F   + P          ++HG+T  
Sbjct: 4   FAAIDFETA--NFERCSVCSVGMVIVR-GGEIVDSFYSLIQPEPNYYHWRCTQVHGLTCA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P F  ++ +       +    +AHNA FD G + A L     D L+     DTL 
Sbjct: 61  DTDGAPVFCEVWKQIEPMI--EGLPLVAHNAPFDKGCLRACLMTYQMDYLN-YEFFDTLK 117

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            AR   P   N  L ++    G  +++   H AL D+   + +  +++
Sbjct: 118 AARHILPHLPNHQLQTVAAACGYDLTNHHHH-ALADAEACAWIAKEIL 164


>gi|308179821|ref|YP_003923949.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308045312|gb|ADN97855.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 173

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 9/161 (5%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D ET   ++K D    +    + +   ++  F   + P         +++HGI +  + D
Sbjct: 2   DFETA--NAKRDSACSLALTVVRNNQISDE-FYTLIKPES-DFFWRNVQIHGIHEADVAD 57

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P F  ++     FF +++   IAHNA FD+G +   L             +DT++ ++R
Sbjct: 58  APKFPDVWQHIEPFF-QRDRLVIAHNAPFDIGVLRNTLAHYGISA-PEYLSMDTVNTSQR 115

Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +P    + L+++C+   I + H   H AL DS   +++ +
Sbjct: 116 FYPELPNHKLDTVCQALDIDLQHH--HNALDDSLACANILL 154


>gi|167772669|ref|ZP_02444722.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
           17241]
 gi|167665147|gb|EDS09277.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
           17241]
          Length = 866

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 8/158 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFD+E+TG D   D I++I AV L         F+ FLCP+  +    + ++HG +D
Sbjct: 511 RVVVFDVESTGADVYTDDIVQIAAVRLSPGGGEAVRFERFLCPS--RPVGASERVHGFSD 568

Query: 68  EFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            FL +   +  +   +F DF   +    + HN  FD+   +  L R        +   DT
Sbjct: 569 AFLAENGGAPCAALEDFLDF--SKGCVLVGHNVMFDLTITSQNLARAGSVQTLSNVWYDT 626

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163
           L I+RR       + L+++    G   +H   H A+ D
Sbjct: 627 LDISRRYMKDLPNHKLSTVSAALG--AAHDPSHNAMDD 662


>gi|315127531|ref|YP_004069534.1| DNA polymerase, exonuclease activity [Pseudoalteromonas sp. SM9913]
 gi|315016045|gb|ADT69383.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas
           sp. SM9913]
          Length = 207

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 16/191 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    K R +V D+E TGLD K   I+ +  V L+D      +    L     K+  ++ 
Sbjct: 17  MQSALKQRYLVIDLELTGLDPKQHEIVSVAWV-LIDNECIKNSLSQHLVNKEVKSLEQSP 75

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
             HGI+ + +    S  SI +     F+  +   + HNA  D GF+   L+        P
Sbjct: 76  VFHGISTDSVAQGQSLQSIITSLSAHFS--DCILVFHNAMLDWGFLKLALKNAGITQ-RP 132

Query: 121 SRIIDTLSIARRKHPSSRND-------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             IIDTL I +++     +D       LN   KRY +   H   H AL D+   +++   
Sbjct: 133 KLIIDTLQIEKKRLLKHSSDIKLDDLTLNECRKRYDLPSYH--CHHALTDAQATAEL--- 187

Query: 174 MMVGGSQINFG 184
           ++    QI+ G
Sbjct: 188 LLAQCHQISAG 198


>gi|213029040|ref|ZP_03343487.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 139

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 23/156 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4   IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DKP    +           +  ++AHNA FD   +          P  P   I T+ ++
Sbjct: 59  ADKPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLS 103

Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLD 163
           RR  P  +    +L K   +++        H AL D
Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYD 139


>gi|315224650|ref|ZP_07866473.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga
           ochracea F0287]
 gi|314945278|gb|EFS97304.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga
           ochracea F0287]
          Length = 1485

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 76/199 (38%), Gaps = 27/199 (13%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R ++I      ++          + P+G     +
Sbjct: 2   YLIFDTETTGLPRRWDAPLSDSDNWPRAVQIAWQLHDEWGALIEHQDFLIKPDGFDVPYD 61

Query: 59  ALKLHGITDEFLKDKP--SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           A K+HGI+ + L +      + +F  F +  ++     +  N  FD+  + AE  R   +
Sbjct: 62  AEKVHGISTQ-LAEAQGMPIAEVFKAFNEALSKAQ-YVVGQNIGFDINIMGAEFYRYGVE 119

Query: 117 -PLDPSRIIDTLSIARRKH------PSSRNDLNSLCK----RYGITISHRSKHGALLDSH 165
            PL    +IDT + A             R  L +L +     +GI  +    H A  D  
Sbjct: 120 SPLTQMPVIDTCTEATANLCQIAGGKGGRYKLPTLTELHSFLFGIPFA--EAHNATADVE 177

Query: 166 LLSDVYIKMMVGGSQINFG 184
             +  + +++  G     G
Sbjct: 178 ATTRCFFELIRRGEGFQEG 196


>gi|269955496|ref|YP_003325285.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304177|gb|ACZ29727.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 247

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 91/239 (38%), Gaps = 19/239 (7%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             +   + FD ETTG+D  NDRI+    V  +    T+   + +L   G +   EA  +H
Sbjct: 13  WARGPLVGFDTETTGVDVANDRIVTAAVVLRIPGVSTD--VRTWLVDPGVEIPAEAAAIH 70

Query: 64  GITDEF-----LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           G+T E      +    +   I +E       +    +A+NA FD+  ++AEL R     L
Sbjct: 71  GVTTEHARAHGVAPAVALEEIAAELAAHLR-EGVPVVAYNAAFDLSLLDAELARHGLATL 129

Query: 119 DP------SRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                   + ++D   L   + ++   +  L  L   YG+ ++    H A +D     DV
Sbjct: 130 PERLGRAVTPVLDPLVLDRWQDRYRRGKRRLGDLVTHYGV-LTTEDLHAADVDVLATLDV 188

Query: 171 YIKMMVGGSQIN-FGFKTNEDRFFKEEKKTVPNISLLKRDKPLF-TRITKEELDEHDKT 227
              ++    ++   G +               + +  +  + L     ++    EH + 
Sbjct: 189 LDALVRTFPELGALGLEELHHAQVGAHDTWARSFNEWRARQGLDGPGASRAWPVEHARR 247


>gi|171743164|ref|ZP_02918971.1| hypothetical protein BIFDEN_02291 [Bifidobacterium dentium ATCC
           27678]
 gi|283455845|ref|YP_003360409.1| DNA polymerase III, subunit epsilon [Bifidobacterium dentium Bd1]
 gi|171278778|gb|EDT46439.1| hypothetical protein BIFDEN_02291 [Bifidobacterium dentium ATCC
           27678]
 gi|283102479|gb|ADB09585.1| DNA polymerase III, epsilon subunit [Bifidobacterium dentium Bd1]
          Length = 212

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 12/175 (6%)

Query: 9   KIVFDIETTGLDSKNDR-IIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGIT 66
            ++ D ETTGL  +    IIEIGA+ +   ++  R  F+  + P  R       +L GI+
Sbjct: 25  YVMLDTETTGLHPEEGATIIEIGALLVTPGNENARPRFEQLVDPQ-RPLPEFISRLTGIS 83

Query: 67  DEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINKDP-LDP 120
           D  L+DKP+  +    F  + ++     +    IAHNA+FD+GF++A  +  + D     
Sbjct: 84  DGMLRDKPTADAAMLRFHQWLDDVWPTGKPLTIIAHNAEFDIGFLDAAERAHDPDANEFD 143

Query: 121 SRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            R + T  ++   +P  R+  ++ L   Y I      +H AL D+     +Y  +
Sbjct: 144 CRWLCTKEMSWELNPRKRHHRVSDLIVDYRI--GDVEEHRALSDAIQEQMIYRAL 196


>gi|261855262|ref|YP_003262545.1| ribonuclease T [Halothiobacillus neapolitanus c2]
 gi|261835731|gb|ACX95498.1| ribonuclease T [Halothiobacillus neapolitanus c2]
          Length = 241

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 17/188 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET GL+ + D ++E+ A    V+           Q+ + P  G   +P
Sbjct: 34  RFRGFMPVVVDVETGGLNPQTDALLELAAVLLDVDANGKIIPVDRIQIHVQPFEGANLNP 93

Query: 58  EALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109
            ++K++GI  D   +     +    +F+            + A  + HNA FD+  INA 
Sbjct: 94  VSMKINGIDIDHPFRCALDEAEALKQFFQPIRQRVKLNGARRAVLVGHNAAFDLAVINAA 153

Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R    K+P  P    DT++++          L    +  G+    +  HGAL D+   
Sbjct: 154 CERTCNKKNPFHPFSTFDTVTLSALA--VGETVLAKALEAIGLEWDSQQAHGALYDAEQT 211

Query: 168 SDVYIKMM 175
           ++++ +++
Sbjct: 212 AELFCRII 219


>gi|282849748|ref|ZP_06259132.1| UvrD/REP helicase [Veillonella parvula ATCC 17745]
 gi|282580685|gb|EFB86084.1| UvrD/REP helicase [Veillonella parvula ATCC 17745]
          Length = 862

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 8/165 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+E+TG D+  DRII+I A+ + +  +    F+ F+ P       ++ ++HG +D +
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLEAFERFINPG--IPVGQSEEVHGFSDAY 552

Query: 70  LKDKPSFSS-IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L++     + +   F +F   +NA  + HN  +DV     EL R N    +   I DTL 
Sbjct: 553 LQEHGEEPAIVLQAFKEF--SKNAIIVGHNVNYDVTIFTNELARHNLGNPEFKAIYDTLD 610

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I RR +P+   + L  L  ++   I H   H A+ D    + + I
Sbjct: 611 IYRRFYPNLPNHKLGFLASKF--PIHHEPTHNAMDDILATAQLLI 653


>gi|226947476|ref|YP_002802567.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A2 str. Kyoto]
 gi|226841365|gb|ACO84031.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A2 str. Kyoto]
          Length = 309

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +FN  N   IAHNA FD+  + + L+  N   +     I T
Sbjct: 58  PHMVQDELEFDKIWGKIKGYFN--NNLVIAHNASFDMSVLRSTLKLYNIK-MPSFEYICT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G    H   H AL D+   S++ I +
Sbjct: 115 MKLSKNFYSNIDNARLNTVNNFLGYKFKH---HDALADAMACSNILINI 160


>gi|168177595|ref|ZP_02612259.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum NCTC 2916]
 gi|182670548|gb|EDT82522.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum NCTC 2916]
          Length = 309

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +FN  N   IAHNA FD+  + + L+  N   +     I T
Sbjct: 58  PHMVQDELEFDKIWGKIKGYFN--NNLVIAHNASFDMSVLRSTLKLYNIK-MPSFEYICT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G    H   H AL D+   S++ I +
Sbjct: 115 MKLSKNFYSNIDNARLNTVNNFLGYKFKH---HDALADAMACSNILINI 160


>gi|153938164|ref|YP_001389626.1| DNA polymerase III subunit epsilon [Clostridium botulinum F str.
           Langeland]
 gi|152934060|gb|ABS39558.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum F str. Langeland]
 gi|295317718|gb|ADF98095.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum F str. 230613]
          Length = 309

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +FN  N   IAHNA FD+  + + L+  N   +     I T
Sbjct: 58  PHMVQDELEFDKIWGKIKGYFN--NNLVIAHNASFDMSVLRSTLKLYNIK-MPSFEYICT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G    H   H AL D+   S++ I +
Sbjct: 115 MKLSKNFYSNIDNARLNTVNNFLGYKFKH---HDALADAMACSNILINI 160


>gi|148378258|ref|YP_001252799.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. ATCC 3502]
 gi|148287742|emb|CAL81808.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502]
          Length = 309

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +FN  N   IAHNA FD+  + + L+  N   +     I T
Sbjct: 58  PHMVQDELEFDKIWGKIKGYFN--NNLVIAHNASFDMSVLRSTLKLYNIK-MPSFEYICT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G    H   H AL D+   S++ I +
Sbjct: 115 MKLSKNFYSNIDNARLNTVNNFLGYKFKH---HDALADAMACSNILINI 160


>gi|109898818|ref|YP_662073.1| DNA polymerase III subunit epsilon [Pseudoalteromonas atlantica
           T6c]
 gi|109701099|gb|ABG41019.1| Exonuclease, RNase T and DNA polymerase III [Pseudoalteromonas
           atlantica T6c]
          Length = 251

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 19/185 (10%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +  D ETTGL+ K D I+ IG V +       +  Q ++     +   +++ +HGI
Sbjct: 57  ETPLVALDFETTGLNPKTDSIVSIGLVAMTVKRIRCQEAQHWIIKPDTELKTKSVVIHGI 116

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   + D PSF+ +  E       Q    +AH+   +V F+N+ L+    + +     ID
Sbjct: 117 THSDVADAPSFNRVLDELLQHL--QGKVVVAHHKDIEVRFLNSALKHYIGEEI-VFPCID 173

Query: 126 TLSIARRK--------------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           T+++  R                 +    L     RY +      +H AL D+   +++ 
Sbjct: 174 TMALEARFSRTIKRTFLRSLLGQKTPSIRLTDCRSRYRLPYY--RQHNALTDALACAELL 231

Query: 172 IKMMV 176
              + 
Sbjct: 232 QAQVA 236


>gi|284040773|ref|YP_003390703.1| exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
           74]
 gi|283820066|gb|ADB41904.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
           74]
          Length = 270

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 8/167 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +     FD+ETTG++   DRII+I  ++ L   +   T    + P G     E+  +HGI
Sbjct: 8   RKPLAFFDLETTGINIAKDRIIDICIIKALPGGEVI-TKNQRVHP-GMPIPLESSLIHGI 65

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRII 124
            D+ ++D P F ++      F +    +    N  +FDV  +  E  R N D    +R +
Sbjct: 66  YDDDVQDAPPFKTVARTLAQFLD--GCDLAGFNCNRFDVPLLVEEFLRANVDFDMKNRRL 123

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +   R  H     +L++  K Y         HGA  D+    +V 
Sbjct: 124 --VDAQRIFHLMEPRNLSAAYKFY-CNKDLVGAHGAEADTIATLEVL 167


>gi|198282567|ref|YP_002218888.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667091|ref|YP_002424758.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247088|gb|ACH82681.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519304|gb|ACK79890.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 201

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 20/189 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCPN-GRKNS 56
           R      +V D+ET G DS+ + ++E+ A+ +    +  +     T    + P  G    
Sbjct: 7   RFRGFLPVVVDVETAGFDSERNALLEVAAIII--GGEVGQLRPVATHHFQVQPFAGAVLD 64

Query: 57  PEALKLHGITD-EFLKDKPSFSSIFSEFW-------DFFNEQNAEWIAHNAKFDVGFINA 108
           P AL   GI   + L+   S        +            + A  + HNA FD+ FI A
Sbjct: 65  PAALAFTGIDPFQALRGAVSEEEALRGIFRPVRTAVKVAQCRRAILVGHNAAFDLSFIKA 124

Query: 109 ELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +R     +P       DT+S+A   +      L       G+   H   H AL D+  
Sbjct: 125 AEKRTGVKNNPFHLFSTFDTVSLAGLAY--GETVLAKAALAAGLDWDHTQAHSALYDARQ 182

Query: 167 LSDVYIKMM 175
            ++++ +++
Sbjct: 183 TAELFCRIV 191


>gi|294794415|ref|ZP_06759551.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           3_1_44]
 gi|294454745|gb|EFG23118.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           3_1_44]
          Length = 862

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+E+TG D+  DRII+I A+ + +  +    F+ F+ P       ++ ++HG +D +
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLEAFERFINPG--IPVGQSKEVHGFSDAY 552

Query: 70  LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L++     +++   F +F   ++A  + HN  +DV     EL R N    +   I DTL 
Sbjct: 553 LQEHGEDPATVLKAFKEF--SKDAIIVGHNVNYDVTIFTNELARHNLGNPEFKAIYDTLD 610

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           I RR +P+   + L  L  ++   I H   H A+ D    + + I  +
Sbjct: 611 IYRRFYPNLPNHKLGFLASKF--PIHHEPTHNAMDDILATAQLLIYAV 656


>gi|124002773|ref|ZP_01687625.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134]
 gi|123992001|gb|EAY31388.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134]
          Length = 270

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 8/167 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K   + FD+ETTG +   DRI+E   ++ L   +  +  +  + P       E+  +HGI
Sbjct: 8   KNPLVFFDLETTGTNIAKDRIVEWAFIKALPNGEIEKDVKK-INPE-MPIPIESSLVHGI 65

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRII 124
            DE +KD P+F SI      F   +  +   +N  +FDV  +  E  R+  D    +R +
Sbjct: 66  YDEHVKDAPTFKSIAKNLVKFL--EGCDLAGYNIVRFDVPVLVEEFLRVGVDFSVNNRKL 123

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +   +         L +  K Y    S    H A  D+    +V 
Sbjct: 124 --VDAQKIFFMMEPRTLTAAYKFY-CNKSLEDAHTAEADTVATLEVL 167


>gi|310823691|ref|YP_003956049.1| exonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|309396763|gb|ADO74222.1| Exonuclease [Stigmatella aurantiaca DW4/3-1]
          Length = 982

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 86/216 (39%), Gaps = 14/216 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D+ETTGLD + D +IE+GA+      +  R  +++     R       +L GI D
Sbjct: 10  RHVFLDLETTGLDPRVDEVIELGALFFEHGREVRRIARMY--APSRPLPITIRRLTGIED 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L  KP F S   E  +         +AHNA F+ GF+   L  I       + ++D+ 
Sbjct: 68  AMLAGKPRFGSDLDELREAL--TGWTVVAHNAPFEKGFLPKLLGPI------RAPVLDSC 119

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            +    HP  S + L ++ +  G+    RS H    D      V  + + G  +      
Sbjct: 120 ELLHYLHPELSSHSLEAMMRWAGLKP--RSTHRVETDCEATYAVLSRALEGCIREGRADD 177

Query: 187 -TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
            ++       + +    ++ ++  +   +    EE 
Sbjct: 178 ISDLLAVLDPQARGGLRLAQVEAGEAPASESPAEER 213


>gi|183179408|ref|ZP_02957619.1| ribonuclease T [Vibrio cholerae MZO-3]
 gi|183012819|gb|EDT88119.1| ribonuclease T [Vibrio cholerae MZO-3]
          Length = 191

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 18/175 (10%)

Query: 24  DRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHGITDEF--LKDKPSF 76
           D ++EI AV L      +     T    + P  G      AL+  GI D F  L+   S 
Sbjct: 1   DALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTGIYDPFSPLRGAVSE 60

Query: 77  SSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQRINKD--PLDPSRIIDTL 127
                E +    ++        A  +AHNA FD  F+ A  +R      P  P    DT 
Sbjct: 61  DHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKLKRVPFHPFATFDTA 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +++       +  L   CK  G+   +R  H AL D+   ++++  ++     + 
Sbjct: 121 TLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIVNQWKALG 173


>gi|317126517|ref|YP_004100629.1| exonuclease RNase T and DNA polymerase III [Intrasporangium calvum
           DSM 43043]
 gi|315590605|gb|ADU49902.1| Exonuclease RNase T and DNA polymerase III [Intrasporangium calvum
           DSM 43043]
          Length = 228

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 15/188 (7%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            +R +  D+ETTGLD + D I+ +G V  +D    + +    L      +  ++  +HGI
Sbjct: 41  DLRLLAVDLETTGLDPRTDHILTVGFV-PVDGLVIDLSGATQLLCRAEGDVGQSAVVHGI 99

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TD+ L      + +          +    +AH+A  +  F+ A  +R +  PL    +  
Sbjct: 100 TDDALAGGLPLADVVDRVAAAL--RGRVLLAHHAVIEREFLAAACERTHGVPLPMEAVDT 157

Query: 126 TLSIARRK-------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---M 175
               AR          P     L +     G+     + H AL D+   +++Y+     +
Sbjct: 158 MQLQARVLGSQSGADLPPGALRLGTARAHLGLP--RYAAHQALTDALACAELYLAQVARL 215

Query: 176 VGGSQINF 183
            GG  ++ 
Sbjct: 216 SGGQPMSL 223


>gi|167647058|ref|YP_001684721.1| exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
 gi|167349488|gb|ABZ72223.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
          Length = 201

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 10/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + +      IG +  ++  +       ++ P   + S   + +HGI 
Sbjct: 1   MPVVAIDFETA--NEQRSSPCAIG-LAWIENGRITEVEHHYIRPIDMRFSGWNIAVHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D  +F  +          + A  IAHNA FD+  +    +     P      I T
Sbjct: 58  PADVEDADAFPDVLGRLQARI--ERATVIAHNAAFDISVMRRTCELYGL-PFPCFDYICT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + +A+   P   +  LN++C   G+   H   H A  D+     V +  +
Sbjct: 115 VQVAKNTWPGLPSAKLNAVCDFLGVEFKH---HDAAQDAFACGSVALAAV 161


>gi|149276274|ref|ZP_01882418.1| DNA polymerase III epsilon subunit [Pedobacter sp. BAL39]
 gi|149232794|gb|EDM38169.1| DNA polymerase III epsilon subunit [Pedobacter sp. BAL39]
          Length = 334

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 11/188 (5%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           ++ N  R + F D+ETTG++  +DRI+EI  ++ + D ++  +T +  + P        +
Sbjct: 1   MKLNLNRPLAFFDLETTGVNVGSDRIVEIAILKAMPDGTELIKTLR--INPE-MPIPLAS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGI DE +  +P+F ++ +E  +F    +A+   +N  +FD+  +  E  R   D  
Sbjct: 58  SLIHGIYDEHIAAEPTFKAVAAEVAEFIG--DADLAGYNSNRFDIPVLLEEFLRAGVDFD 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              R    + +    H   +  L +  K Y       + H A  D      V +  +   
Sbjct: 116 MSDRKF--VDVQNIFHQMEQRTLKAAYKFY-CDKDIINAHSAEADITATYHVLLAQIERY 172

Query: 179 SQINFGFK 186
           +  +F  K
Sbjct: 173 ADTDFEDK 180


>gi|238018443|ref|ZP_04598869.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748]
 gi|237864914|gb|EEP66204.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748]
          Length = 862

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+E+TG D+  DRII+I A+ + +  +   TF+ F+ P       ++ ++HG +D +
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLETFERFINPG--VPVGQSEEVHGFSDAY 552

Query: 70  LKDKPSFSS-IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK+     + +   F +F   +NA  + HN  +DV     EL R N    +   I DTL 
Sbjct: 553 LKEHGEEPAIVLQAFKEF--SKNAIIVGHNVNYDVTIFTNELARHNLGNPEFKAIYDTLD 610

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           I RR +P+   + L  L   +   I+H   H A+ D    S + I  +
Sbjct: 611 IYRRFYPNLPNHKLGFLASEF--PINHEPTHNAMDDILATSQLLIYAV 656


>gi|296119762|ref|ZP_06838316.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295966916|gb|EFG80187.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 1149

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 13/176 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M + NK    V D E TGL +  DRI+EIG V L +  +  +T+   + PN    +    
Sbjct: 1   MSQHNK--FAVVDFEATGLSAA-DRIVEIGVVLLDNNLEVEQTWDTLVQPNREVPNSF-- 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +H +T   L+  P+F  I ++F    + +    +AHNA F+  F+  E  R+     + 
Sbjct: 56  -VHKLTTADLEKAPTFEGISAKFASLLDGR--TVVAHNASFEEHFMRQEFSRLGVLWPNY 112

Query: 121 SRI-IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               IDT  ++ +    S+     +    GI   +++ H AL  +   +D+   ++
Sbjct: 113 GSWIIDTAVLSEKFLNKSQF--QEVLAAAGII--NKNPHQALSGAMATADLLKWLV 164


>gi|329946199|ref|ZP_08293812.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527797|gb|EGF54788.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 276

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 4/149 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL    D I+E+  V      +  R++   + P G        ++HG+  E
Sbjct: 56  YAVVDLETTGLSPTTDSILEVALVLTDAAGRVERSWSTLIDP-GAGVDVGPTRIHGLVAE 114

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDTL 127
            L   P    +        +      +AHNA+FDVGF+   L  R   D       + T+
Sbjct: 115 ELSGAPGLDDVADLLVA--DLAGRAVVAHNARFDVGFLTQALGARGLLDRGARVPRVCTM 172

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRS 156
             AR    +    L + C+  G+ I    
Sbjct: 173 EWARHFMTTPSRRLTTCCEVAGVEIGRHH 201


>gi|255690157|ref|ZP_05413832.1| exonuclease [Bacteroides finegoldii DSM 17565]
 gi|260624444|gb|EEX47315.1| exonuclease [Bacteroides finegoldii DSM 17565]
          Length = 184

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 69/172 (40%), Gaps = 11/172 (6%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR     D ET   + K   I  +G V + +    N+ +   + P     +     +HG+
Sbjct: 1   MRNFAAIDFETA--NGKRTSICSVGVVIVKEGKIINKIY-RLIRPAPNYYTQWTTAVHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T +   +   F  +++E     +      +AHN+ FD G + A  +        P +   
Sbjct: 58  TYDDTIEADDFPEVWAEIKPLID--GLPLVAHNSPFDEGCLRAVHELYGM-TYPPYKFYC 114

Query: 126 TLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T   +R+        + L+++  R G  +++   H AL D+   + + + ++
Sbjct: 115 TCRASRKVFGKELPNHQLHTVAARCGYDLTNH--HHALADAEACAQIALLII 164


>gi|268320049|ref|YP_003293705.1| hypothetical protein FI9785_1583 [Lactobacillus johnsonii FI9785]
 gi|262398424|emb|CAX67438.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
           johnsonii FI9785]
          Length = 320

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 75/175 (42%), Gaps = 9/175 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67
             + D+ETTGL    DRI E+G + +  + +   TF   +  P+  K      KL+GI +
Sbjct: 33  YTLIDVETTGLSPYRDRITEMGGLRVR-HGEVVATFSELVKFPDSNKVPAFITKLNGIDE 91

Query: 68  EFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             +++K         ++ +F        + +N  FD+ F+    ++ +   L+ +  +D 
Sbjct: 92  ATIEEKGLPVQEAIKKYREFIGSD--PIVGYNVNFDLNFVYDLAEKYHLTVLN-NDYVDV 148

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +AR  +P  +++ L     R  + I+   +H  L D      V+ +      Q
Sbjct: 149 YRLARSFYPQEQHNRLLDCMHR--LDIAETQEHRGLDDCLDTKKVFDEFHRLFRQ 201


>gi|163857665|ref|YP_001631963.1| putative exonuclease [Bordetella petrii DSM 12804]
 gi|163261393|emb|CAP43695.1| putative exonuclease [Bordetella petrii]
          Length = 177

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 63/167 (37%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL + +  I+E  AV +       R F   +   G    P   +L GIT  
Sbjct: 8   FAVADLETTGLSTASCEILEFAAVHVGPDGAIEREFSQVVRTRGT-VPPFITRLTGITQA 66

Query: 69  FLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +       +  FS F  F    +A    HNA FD  F+ A  +         +    TL
Sbjct: 67  EVDGHGIPVAEAFSAFLAFLA--DAPVFFHNASFDCRFLQAAAEHTGLPFA--NATHCTL 122

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +AR+  P    + L  L +  G   +    H AL D      V + 
Sbjct: 123 QLARQAWPELPSHKLQVLARHVG---AADPTHRALADVRSTVAVALA 166


>gi|327313911|ref|YP_004329348.1| exonuclease [Prevotella denticola F0289]
 gi|326945021|gb|AEA20906.1| exonuclease [Prevotella denticola F0289]
          Length = 163

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 9/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
                 D ET   + +   +  +G V +    +   TF   + P          ++HG+T
Sbjct: 2   QNFAAIDFETA--NFERSSVCSVGVVIVR-GGEVADTFYSLVHPEPNYYQWRCTQVHGLT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E   D P FS +++        +    +AHNA FD G + A  Q    D  D    +DT
Sbjct: 59  REDTDDAPVFSKVWARIEPLI--EGLPLVAHNAPFDKGCLRACFQTYRMDYPD-YEFLDT 115

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L  ARR  P   N  L+++    G  +S    H AL D+   + +  +++
Sbjct: 116 LRAARRVFPRLSNHQLHTVSAACGYDLS--RHHHALADAEACAWIAREIL 163


>gi|257068061|ref|YP_003154316.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Brachybacterium faecium DSM 4810]
 gi|256558879|gb|ACU84726.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Brachybacterium faecium DSM 4810]
          Length = 238

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 15/184 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF-- 69
           FD ETTG +   DRI+ +  V  +   +   T   +L     +    A ++HGI+ E   
Sbjct: 16  FDTETTGTNVARDRIVTVALVHSVGPGREGETVATWLIDPEMEIPEPAQRVHGISTEHAR 75

Query: 70  ---LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL------DP 120
              +K   +   + +   +   ++    +A N  FD+  +  EL R+    L      D 
Sbjct: 76  AHGMKAAEALDEVAALIAEALAKE-VPLVAFNISFDLAILENELTRLGLPTLAQRLGHDI 134

Query: 121 SRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           + +ID L I R   ++   +  L  +   YG+    R  H A +D     DV   + +  
Sbjct: 135 APVIDALVIDRGVDRYRKGKRTLTDVLAHYGLEQDGR-LHTADVDVSATLDVLRAITLKY 193

Query: 179 SQIN 182
            +I 
Sbjct: 194 PKIA 197


>gi|312898045|ref|ZP_07757451.1| DNA polymerase III subunit epsilon domain protein [Megasphaera
           micronuciformis F0359]
 gi|310620870|gb|EFQ04424.1| DNA polymerase III subunit epsilon domain protein [Megasphaera
           micronuciformis F0359]
          Length = 184

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 10/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +     D ET   +   D    + AV  +            + P   +   + +++HGIT
Sbjct: 2   LEFTAIDFETA--NRYADSACSLAAV-SIAGQSVMHEGYTLIKPPFNRFDEDNIRIHGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +  KP+F +++ +     N++    IAH A FD   + + ++R N   L+ +    T
Sbjct: 59  PQMVSAKPTFDALWPDIRKRLNKR--ILIAHYAVFDTRVLRSLIKRYNLPGLN-ASYACT 115

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + I+R+  P    + L+++    G T  H   H AL D+   + +   
Sbjct: 116 VEISRKVWPDLPNHKLDTVAGHLGFTFRH---HQALDDARACARIVCA 160


>gi|312599149|gb|ADQ91172.1| hypothetical protein BpV2_005c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 432

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 22/183 (12%)

Query: 7   MRKIVFDIETTGLD-------------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53
           M  I +D ETTGL                  R++ +  V+     +   ++   + P+  
Sbjct: 1   MNYISWDTETTGLPMGYTKSTPDNVHLFDRCRMLTLAFVKYSSKGRELSSYHGLVYPDTF 60

Query: 54  KNSPEALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
               E+  +HGIT E  L     F  +++ F +  +   +  +AHN+ FD     +E  R
Sbjct: 61  NVPQESTNVHGITHEHALHKGQPFGYVYAAFKEAVSNT-SILVAHNSSFDENCFFSECYR 119

Query: 113 INKD--PLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHR-SKHGALLDSHLLS 168
              D  P      +DTL +AR   P    + L ++ K Y     H    H AL DS    
Sbjct: 120 RGFDTEPFKHVHFVDTLKMARSVLPGLHNHKLLTVYKYY---FGHEFDAHDALNDSRACG 176

Query: 169 DVY 171
            +Y
Sbjct: 177 KIY 179


>gi|54295804|ref|YP_128219.1| ribonuclease T [Legionella pneumophila str. Lens]
 gi|53755636|emb|CAH17138.1| ribonuclease T [Legionella pneumophila str. Lens]
 gi|307611851|emb|CBX01565.1| ribonuclease T [Legionella pneumophila 130b]
          Length = 207

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 80/197 (40%), Gaps = 19/197 (9%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    +V D+ET G+D + + ++E+  V    +     K   ++   + P  G + 
Sbjct: 13  KNRFRGFLPVVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKESSYFEHILPFPGAEL 72

Query: 56  SPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFIN 107
             ++L+ + I         + ++ +   +F    D       Q A  + HNA FD+ FI 
Sbjct: 73  DQKSLEFNQIDPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIK 132

Query: 108 AELQRINKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A ++R     P       DT ++A          L    +  G+    +  H A+ D+  
Sbjct: 133 AAIKRTGIKSPFHAFTCFDTATLAGLIF--GETVLAKAVQAAGLHFDSQEAHSAIYDAEK 190

Query: 167 LSDVYIKMMVGGSQINF 183
            +D++  M+     +N 
Sbjct: 191 TADLFCLMINKWRMLNI 207


>gi|227889381|ref|ZP_04007186.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii
           ATCC 33200]
 gi|227850183|gb|EEJ60269.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii
           ATCC 33200]
          Length = 320

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 75/175 (42%), Gaps = 9/175 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67
             + D+ETTGL    DRI E+G + +  + +   TF   +  P+  K      KL+GI +
Sbjct: 33  YTLIDVETTGLSPYRDRITEMGGLRVR-HGEVVATFSELVKFPDSNKVPAFITKLNGIDE 91

Query: 68  EFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             +++K         ++ +F        + +N  FD+ F+    ++ +   L+ +  +D 
Sbjct: 92  ATIEEKGLPVQEAIKKYREFIGSD--PIVGYNVNFDLNFVYDLAEKYHLTVLN-NDYVDV 148

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +AR  +P  +++ L     R  + I+   +H  L D      V+ +      Q
Sbjct: 149 YRLARSFYPQEQHNRLLDCMHR--LDIAETQEHRGLDDCLDTKKVFDEFHRLFRQ 201


>gi|325269989|ref|ZP_08136598.1| exonuclease [Prevotella multiformis DSM 16608]
 gi|324987712|gb|EGC19686.1| exonuclease [Prevotella multiformis DSM 16608]
          Length = 163

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   +  +G V +    +   TF   + P         +++HG+T  
Sbjct: 4   FAAIDFETA--NFERCSVCSVGVVIVR-GGEIVDTFYSLIQPEPNYYHWRCVQVHGLTCA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              D P FS ++         +    +AHNA FD G + A       D  D     DTL 
Sbjct: 61  DTDDAPVFSEVWKVIEPMI--EGLPLVAHNAPFDKGCLKAAFYTYQMDYPD-YEFFDTLK 117

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ARR+ P    + L ++    G  +S+   H AL D+   + +  +++
Sbjct: 118 AARRRLPDLPDHQLQTVAAECGYDLSNH--HHALADAEACAWIAREIL 163


>gi|332306913|ref|YP_004434764.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174242|gb|AEE23496.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 251

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 74/181 (40%), Gaps = 19/181 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+ K D I+ IG V +          Q ++     +   +++ +HGIT   
Sbjct: 61  VALDFETTGLNPKTDSIVSIGLVAMTTQRIRCAQAQHWIIKPDTELKSKSVVIHGITHSD 120

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P+F+ +  E  +    Q    +AH+   +  F+N+ +++   + +     IDT+S+
Sbjct: 121 VADAPTFNRVLDELLEHL--QGKVVVAHHKDIESRFLNSAMKQYIGEEI-VFPCIDTMSL 177

Query: 130 ARRK--------------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R                 +    L     RY +      +H AL D+   +++    +
Sbjct: 178 EARFSRTFKRTFLRSLLGQKTPSIRLTDCRSRYHLPYY--RQHNALTDATACAELLQAQI 235

Query: 176 V 176
            
Sbjct: 236 A 236


>gi|294673890|ref|YP_003574506.1| exonuclease [Prevotella ruminicola 23]
 gi|294473761|gb|ADE83150.1| exonuclease [Prevotella ruminicola 23]
          Length = 163

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 70/168 (41%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   +++   +  +G V + D    + +F   + P     +    ++HG+T +
Sbjct: 4   FAAIDFETA--NNERTSVCSVGVVIVRDGEIVD-SFYSLIQPEPNYYNYWCSQVHGLTRQ 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             ++ P F  ++ +       +    +AHN  FD   + A   R  +      +   T  
Sbjct: 61  DTEEAPIFPEVWKQIEPMI--EGLPLVAHNKAFDESCLKAVF-RCYQMDYPDYQFYCTCV 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +R+  P+ + + L+++ K  G  + +   H AL D+   + +  +++
Sbjct: 118 ASRKAFPNAANHQLHTISKLCGYELENH--HHALADAEACAWIAREIL 163


>gi|315641337|ref|ZP_07896413.1| exonuclease [Enterococcus italicus DSM 15952]
 gi|315482910|gb|EFU73430.1| exonuclease [Enterococcus italicus DSM 15952]
          Length = 177

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + +      +  V + D       +   + P         +++HGI 
Sbjct: 1   MNFIAMDFETA--NHQRHSACSLALVMVRDSKIVGEYYS-LIQPETSFF-WRNIQIHGIK 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +K  P F  ++     +FN   +  IAHNA FD G +   L   N +       +DT
Sbjct: 57  PQDVKTAPKFPEVWESIAQYFNPY-SLIIAHNAPFDNGVLAGCLDYYNLEQ-PHYLTLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +  +R+ + +   + LN++C    I + +   H AL DS   +++ + 
Sbjct: 115 VRTSRKFYQNLPNHRLNTVCGYLDIPLLNH--HDALEDSRACAEILLA 160


>gi|329770482|ref|ZP_08261860.1| hypothetical protein HMPREF0433_01624 [Gemella sanguinis M325]
 gi|328836231|gb|EGF85900.1| hypothetical protein HMPREF0433_01624 [Gemella sanguinis M325]
          Length = 614

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 13/174 (7%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            KNK    V DIE T    ++  II+  A +  +D+ K   +   ++ P  ++ S    +
Sbjct: 1   MKNK-PFCVVDIELT----EDKEIIQFSATKLSIDFKKI-SSIDYYVKPK-KEISSFVSE 53

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
             GIT E L+DKP F  I    +++   ++   + H  + D   I     ++    + P 
Sbjct: 54  FTGITPEMLEDKPLFKEIAYGIYEYI--KDCTLVCHGLQSDYLVIKKNFMKVGIKYI-PY 110

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           R +DT+ +AR   P+ +   L  L     +  S    H AL+D  +  ++  K+
Sbjct: 111 RTVDTVELARILFPTQKSYRLVDLSNSLNL-YSGTGYHNALIDVEVTVNLLKKI 163


>gi|239906614|ref|YP_002953355.1| DNA polymerase III epsilon subunit [Desulfovibrio magneticus RS-1]
 gi|239796480|dbj|BAH75469.1| DNA polymerase III epsilon subunit [Desulfovibrio magneticus RS-1]
          Length = 242

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 77/189 (40%), Gaps = 21/189 (11%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64
            +  +V D E TG D K D I+ + AV L   S     TF     P  R    ++  +HG
Sbjct: 43  DLEFVVLDTELTGFDPKRDAIVSVAAVRLRGLSIMAGETFAALTRPQ-RDVPRQSSLVHG 101

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +T   L       ++     DF     A  + H+   D+GF+NA  +R   D L  +  I
Sbjct: 102 LTASTLSQAADLEAVLLRLLDFIGP--AVIVGHHVDLDMGFLNAASRRYFGDELA-APCI 158

Query: 125 DTLSIARRKHPSSRNDLN-------------SLCKRYGITISHRSKHGALLDSHLLSDVY 171
           DTL +A   +   R  L              SLC+RYG+     + H A  D+   + ++
Sbjct: 159 DTLRLAMA-YEEKRLSLEGGAGLEHAAFDLPSLCRRYGLP--EFAAHDARHDALAAAYLF 215

Query: 172 IKMMVGGSQ 180
           + +     Q
Sbjct: 216 VYLAKKLGQ 224


>gi|104773741|ref|YP_618721.1| putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|116513740|ref|YP_812646.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|300813077|ref|ZP_07093455.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|313123346|ref|YP_004033605.1| DNA polymerase iii, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|103422822|emb|CAI97474.1| Putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|116093055|gb|ABJ58208.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|300495918|gb|EFK31062.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|312279909|gb|ADQ60628.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|325125397|gb|ADY84727.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
 gi|325684506|gb|EGD26670.1| exonuclease [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 178

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 9/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET      +     +  V + +    +R F   + P       + +K+H IT
Sbjct: 2   MNFVAMDFETANQHPASA--CSLALVLVRESKIIDR-FYTVINPQMA-FDAQQVKVHDIT 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +   P+ + ++ +    F +      AHNA+FD   +   L R          ++D+
Sbjct: 58  AEDVAGAPTMAEVWPKIQPLF-QPGMLVAAHNARFDCNVMKQSLARYGIAE-PHYLVLDS 115

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L ++R   P      LN++    G+ + H   H AL DS   + + +K
Sbjct: 116 LKVSRELEPGLDNYQLNTVSDLLGVELWHH--HNALSDSEACAGILLK 161


>gi|300770507|ref|ZP_07080386.1| DNA-directed DNA polymerase III epsilon subunit [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762983|gb|EFK59800.1| DNA-directed DNA polymerase III epsilon subunit [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 203

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 12/168 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D E     +  + +  +G V  +D       F   + P   +   +  ++HGI  +
Sbjct: 6   FIAIDFELA--TAAYNSVCSVGIVR-VDQGVITDEFYSLVKPPKNEYMWQTTRVHGIKPK 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRIID 125
              D P+F  I+ +  D    QN + +AHN KFD   ++  ++    D  +   P     
Sbjct: 63  DTADAPTFEEIYPKIKDLL--QNRKMVAHNEKFDREVLSKTMKACGLDYRELHLPVMWEC 120

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           T  I R K    +  LN  C+  GI ++H   H AL D+   + +Y+K
Sbjct: 121 TSKIYRDKG-FKKTKLNLCCEIMGIDLNH---HEALSDAKAAAFLYLK 164


>gi|294792636|ref|ZP_06757783.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           6_1_27]
 gi|294456535|gb|EFG24898.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           6_1_27]
          Length = 862

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 8/168 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V+D+E+TG D+  DRII+I A+ + +  +    F+ F+ P       ++ ++HG +D +
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLEAFERFINPG--IPVGQSEEVHGFSDAY 552

Query: 70  LKDKPSFSS-IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L++     + +   F +F   +NA  + HN  +DV     EL R N    +   I DTL 
Sbjct: 553 LQEHGEEPAIVLQAFKEF--SKNAIIVGHNVNYDVTIFTNELARHNLGNPEFKAIYDTLD 610

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           I RR +P+   + L  L   +   I H   H A+ D    + + I  +
Sbjct: 611 IYRRFYPNLPNHKLGFLASEF--PIHHEPTHNAMDDILATAQLLIYAV 656


>gi|150005552|ref|YP_001300296.1| putative exonuclease/DNA polymerase III epsilon c [Bacteroides
           vulgatus ATCC 8482]
 gi|254884534|ref|ZP_05257244.1| exonuclease [Bacteroides sp. 4_3_47FAA]
 gi|294778642|ref|ZP_06744064.1| exonuclease [Bacteroides vulgatus PC510]
 gi|319640774|ref|ZP_07995487.1| exonuclease/DNA polymerase III epsilon c [Bacteroides sp. 3_1_40A]
 gi|149933976|gb|ABR40674.1| putative exonuclease/DNA polymerase III epsilon c [Bacteroides
           vulgatus ATCC 8482]
 gi|254837327|gb|EET17636.1| exonuclease [Bacteroides sp. 4_3_47FAA]
 gi|294447591|gb|EFG16169.1| exonuclease [Bacteroides vulgatus PC510]
 gi|317387586|gb|EFV68452.1| exonuclease/DNA polymerase III epsilon c [Bacteroides sp. 3_1_40A]
          Length = 162

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 8/160 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   +++   I  +G V + +    +R F   + P          ++HG+T E
Sbjct: 4   FAAIDFETA--NNERTSICSVGVVIVRNGEIADR-FYSLVHPEPDYYLYWNTRIHGLTQE 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P FS ++ +       +    +AHN  FD G + A  +    D  D      T  
Sbjct: 61  DTAHAPVFSEVWKQVAPKI--EGLPLVAHNKAFDEGCLKAVFRTYCMDYPDYD-FYCTYQ 117

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            +R+      + L+++   +G  + +   H AL D+   +
Sbjct: 118 ASRKLKGLRNHQLHTVAGFFGFELENH--HHALADAEACA 155


>gi|213584452|ref|ZP_03366278.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 216

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 20/153 (13%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
           +EI +V+++D +  N      + P+ R  +P+A+ +H IT+  + DKP    +       
Sbjct: 1   VEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMVADKPWIEDVIP----- 53

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCK 146
               +  ++AHNA FD   +          P  P   I T+ ++RR  P  +    +L K
Sbjct: 54  LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLSRRLWPGIKYSNMALYK 103

Query: 147 RYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176
              +++        H AL D ++ + + I +M 
Sbjct: 104 SRKLSVQTPPGLHHHRALYDCYITAALLIDIMR 136


>gi|83643302|ref|YP_431737.1| putative exonuclease [Hahella chejuensis KCTC 2396]
 gi|83631345|gb|ABC27312.1| putative exonuclease [Hahella chejuensis KCTC 2396]
          Length = 192

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 18/184 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D ETTGLD     +IEI  +++         F   + P      PEA ++HG+T+
Sbjct: 16  RVVVLDTETTGLD-DQAEVIEISVMDMRGNVL----FDQLVRPLN-PVPPEAAEIHGVTN 69

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L +KP+F  ++   W     +    +A+NA FD   +           ++ +      
Sbjct: 70  EKLANKPNFPDVYISLWRAIGGR--TVVAYNADFDRRLLKQTCAAYRLPMIEANWQCAMN 127

Query: 128 SIAR-RKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           + AR RK P ++        L     + GI +     H A+ D     +V I+ +   S+
Sbjct: 128 AYARYRKEPDAKRGGYRRQSLAKAAAQMGIEVYG--AHRAVADCFTTVEV-IRAVAALSE 184

Query: 181 INFG 184
               
Sbjct: 185 PAHH 188


>gi|42519676|ref|NP_965606.1| hypothetical protein LJ0649 [Lactobacillus johnsonii NCC 533]
 gi|41583965|gb|AAS09572.1| hypothetical protein LJ_0649 [Lactobacillus johnsonii NCC 533]
          Length = 320

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67
             + D+ETTGL    DRI E+G +++  + +   TF   +  P+  K      KL+GI +
Sbjct: 33  YTLIDVETTGLSPYRDRITEMGGLKVR-HGEVVATFSELVKFPDSNKVPAFITKLNGIDE 91

Query: 68  EFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             +++K         ++ +F        + +N  FD+ F+    ++ +   L+ +  +D 
Sbjct: 92  TTIEEKGLPVQEAIKKYREFIGSD--PIVGYNVNFDLNFVYDLAEKYHLTVLN-NDYVDV 148

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +AR  +P  +++ L     R  + I+   +H  L D      V+
Sbjct: 149 YRLARSFYPQEQHNRLLDCMHR--LDIAETQEHRGLDDCLDTKKVF 192


>gi|313674243|ref|YP_004052239.1| exonuclease RNAse t and DNA polymerase iii [Marivirga tractuosa DSM
           4126]
 gi|312940941|gb|ADR20131.1| Exonuclease RNase T and DNA polymerase III [Marivirga tractuosa DSM
           4126]
          Length = 267

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 10/173 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    K   ++FD+ETTG +  NDRI+E   V+++      +  +  + P  R    E+ 
Sbjct: 1   MFLNLKNPLVIFDLETTGTNVVNDRIVEYSFVKVMPDGDVIKNTEK-VNPE-RPIPLESS 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD 119
            +HGI D+ +KDKP+F ++  E   F      +    N  KFDV  +  E  R + D   
Sbjct: 59  LIHGIYDKDVKDKPTFKAMAKELSSFL--HGCDLAGFNILKFDVPVLVEEFLRADVDFDI 116

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVY 171
             R +  L   +  H   +  L +  K Y G  +     H A  D+    +V 
Sbjct: 117 SKRKL--LDAQKIFHMMEKRTLTAAYKFYCGKELVD--AHSAEADTLATLEVL 165


>gi|297156451|gb|ADI06163.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
           BCW-1]
          Length = 254

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 17/175 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   I FD+ETTG D    RI+    VE+       R    +L   G     +A+ 
Sbjct: 1   MGWHRELLIGFDLETTGTDPGEARIVTAAVVEVRGGEPVGRR--EWLADPGVTIPDDAVA 58

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGIT E    +      +  E  D      +  A  +A+NA FD+  + AEL+R     
Sbjct: 59  VHGITTEWAAAEGRPSREVADEIADVLVAHWQAGAPVVAYNAAFDLSLLAAELRRHGLPS 118

Query: 118 L-------DPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           L       +   ++D  T+  A  ++   +  L ++C  YG+   H   H A  D
Sbjct: 119 LGERLGGAETGPVVDPYTIDRAVDRYRKGKRTLEAVCGEYGVV--HERAHDAGAD 171


>gi|256819216|ref|YP_003140495.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM
           7271]
 gi|256580799|gb|ACU91934.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM
           7271]
          Length = 1485

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 76/199 (38%), Gaps = 27/199 (13%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R ++I      ++          + P+G     +
Sbjct: 2   YLIFDTETTGLPRRWDAPLTDSDNWPRAVQIAWQLHDEWGALIEHQDFLIKPDGFDVPYD 61

Query: 59  ALKLHGITDEFLKDKP--SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           A K+HGI+ + L +      + +F  F +  ++     +  N  FD+  + AE  R   +
Sbjct: 62  AEKVHGISTQ-LAEAQGLPIAEVFKAFNEALSKAQ-YVVGQNIGFDINIMGAEFYRYGVE 119

Query: 117 -PLDPSRIIDTLSIARRKH------PSSRNDLNSLCK----RYGITISHRSKHGALLDSH 165
            PL    +IDT + A             R  L +L +     +G+  +    H A  D  
Sbjct: 120 SPLTQMPVIDTCTEATANLCQIAGGKGGRYKLPTLTELHSFLFGVPFA--EAHNATADVE 177

Query: 166 LLSDVYIKMMVGGSQINFG 184
             +  + +++  G     G
Sbjct: 178 ATTRCFFELIRRGEGFQEG 196


>gi|254490869|ref|ZP_05104052.1| exonuclease superfamily [Methylophaga thiooxidans DMS010]
 gi|224464041|gb|EEF80307.1| exonuclease superfamily [Methylophaga thiooxydans DMS010]
          Length = 240

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 80/191 (41%), Gaps = 23/191 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEA 59
           +  +++  +  D ETTGLD + + I+  G V         ++  +QV + PN    S E+
Sbjct: 43  MPLSEVPFVALDFETTGLDPRYNEIVSFGLVPFTLRGIRPSDGHYQV-VKPNCV-LSEES 100

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +  H IT   +   P    +  E     +      + H  + +  F++   +++  +   
Sbjct: 101 IAFHRITHSQVDTAPPLEKVLDELLGRLS--GCIVVVHYQQIERPFLDLACRKLWGEH-C 157

Query: 120 PSRIIDTLSI-ARRKHPSSRN-------------DLNSLCKRYGITISHRSKHGALLDSH 165
              +IDT++I AR +    ++              L+   +RYG+     S H A +D+ 
Sbjct: 158 LFPLIDTMAIEARWQRSGWKHRLKKTLGLQPVSIRLDDSRRRYGLP--SYSAHHAKVDAM 215

Query: 166 LLSDVYIKMMV 176
             +++++  + 
Sbjct: 216 ATAELFLAQVA 226


>gi|154487175|ref|ZP_02028582.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis
           L2-32]
 gi|154085038|gb|EDN84083.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis
           L2-32]
          Length = 261

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 10/153 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIETTGL  ++ RIIE+GAV +    K   ++   + P       +  ++ GITD 
Sbjct: 99  YVAVDIETTGL-GRDARIIELGAVRIRHGRKVA-SYSQLVNPQI-PIPAKVTQITGITDR 155

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +K KP+      +F+ F       WI HN  +FD+  I  E QR+     D S   DT+
Sbjct: 156 NVKGKPTIDKALPKFYAFCGRD--TWIGHNIRRFDIPVIAREAQRVGAGMPDVS-FYDTM 212

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHG 159
            +++   P    + +  L + +GI  + R  H 
Sbjct: 213 ELSQALLPQLDHHRVVDLIRYFGIAKTER--HR 243


>gi|317051245|ref|YP_004112361.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
 gi|316946329|gb|ADU65805.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
          Length = 206

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 7/169 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD ETTGLD  +D II IGAV +      T+   ++F  P       E++K+H +   
Sbjct: 32  VSFDCETTGLDVHHDEIISIGAVRIRGNQILTSEKLELFFNPQQEMRV-ESIKIHHLLTC 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTL 127
            L D         +F +F   +    + +  +FDV  +N  L+  +     +    +  L
Sbjct: 91  DLVDGVPLEEGIRQFLNFIGNR--PLVGYYLEFDVAMVNRVLKPMLGITLPNRQIEVSGL 148

Query: 128 SIARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              ++    P    DL      + + +   +KH AL D+ + + +Y+K+
Sbjct: 149 YYDKKIAAIPQGNVDLRFDSIMHDLDLPPFAKHDALGDAIMTAMMYVKL 197


>gi|323497526|ref|ZP_08102544.1| putative exonuclease [Vibrio sinaloensis DSM 21326]
 gi|323317609|gb|EGA70602.1| putative exonuclease [Vibrio sinaloensis DSM 21326]
          Length = 238

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 10/171 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGLD+++D I+ +G VE+ +      T Q F   N  +  PE   ++ IT +
Sbjct: 51  YLVLDLETTGLDAESDLILSMGWVEISNGVIDLSTAQHFYLSNESQIKPETAVINHITPQ 110

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D  S     +  ++    Q    +AH+   +  FI   L    +    P   +DTL 
Sbjct: 111 MLEDGISIHDAMNALFEV--AQGKVLVAHSCSVENSFIQRYLSYRFQINAVPLMWLDTLC 168

Query: 129 IARRK------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           I ++       H      L +  +RY +      +H AL+D+   +++ + 
Sbjct: 169 IEKKLARAINNHQDLDVSLGATRERYQLP--EYIEHNALMDAVATAELLLA 217


>gi|325858421|ref|ZP_08172583.1| exonuclease [Prevotella denticola CRIS 18C-A]
 gi|325483059|gb|EGC86047.1| exonuclease [Prevotella denticola CRIS 18C-A]
          Length = 178

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 9/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
                 D ET   + +   +  +G V +    +   TF   + P          ++HG+T
Sbjct: 17  QNFAAIDFETA--NFERSSVCSVGVVIVR-GGEVADTFYSLVHPEPNYYQWRCTQVHGLT 73

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E     P FS +++        +    +AHNA FD G + A  Q    D  D    +DT
Sbjct: 74  REDTDGAPVFSKVWARIEPLI--EGLPLVAHNAPFDKGCLRACFQTYRMDYPD-YEFLDT 130

Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L  ARR  P   N  L+++    G  +S    H AL D+   + +  +++
Sbjct: 131 LRAARRVFPHLSNHQLHTVSAACGYDLS--RHHHALADAEACAWIAREIL 178


>gi|146309558|ref|YP_001190023.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina ymp]
 gi|145577759|gb|ABP87291.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina
           ymp]
          Length = 235

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 19/185 (10%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           ++  +  D+ETTGLD +   I+ +G V L          + ++     + S E++  H I
Sbjct: 42  EVPLVALDVETTGLDPREHAIVSLGLVPLNLQRIRCSEARYWVVKPAGELSAESVTFHHI 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   ++  P  +S+  E  +         +AH    +  F++  L+R   + L    IID
Sbjct: 102 THSDIRHAPRLASVLDELLEALA--GKVVVAHYRHIERSFLDQALRRHLGEGLI-FPIID 158

Query: 126 TLSIARRKHPSSRND--------------LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           T+ +  R HP  R                L     RYG+ +   S H AL D+    ++ 
Sbjct: 159 TMELEARLHPKRRVSWWNRLRGRRPLSIRLADSRLRYGLPLY--SAHHALTDALACGELL 216

Query: 172 IKMMV 176
              + 
Sbjct: 217 QAQVA 221


>gi|148361305|ref|YP_001252512.1| ribonuclease T [Legionella pneumophila str. Corby]
 gi|296108645|ref|YP_003620346.1| ribonuclease T [Legionella pneumophila 2300/99 Alcoy]
 gi|148283078|gb|ABQ57166.1| ribonuclease T [Legionella pneumophila str. Corby]
 gi|295650547|gb|ADG26394.1| ribonuclease T [Legionella pneumophila 2300/99 Alcoy]
          Length = 207

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 80/197 (40%), Gaps = 19/197 (9%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    +V D+ET G+D + + ++E+  V    +     K   ++   + P  G + 
Sbjct: 13  KNRFRGFLPVVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKESSYFEHILPFPGAEL 72

Query: 56  SPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFIN 107
             ++L+ + I         + ++ +   +F    D       Q A  + HNA FD+ FI 
Sbjct: 73  DQKSLEFNQIDPYQPLRFAVDEQIALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIK 132

Query: 108 AELQRINKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A ++R     P       DT ++A          L    +  G+    +  H A+ D+  
Sbjct: 133 AAIKRTGIKSPFHAFTCFDTATLAGLIF--GETVLAKAVQTAGLHFDSQEAHSAIYDAEK 190

Query: 167 LSDVYIKMMVGGSQINF 183
            +D++  M+     +N 
Sbjct: 191 TADLFCLMINKWRMLNI 207


>gi|332653929|ref|ZP_08419673.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae
           bacterium D16]
 gi|332517015|gb|EGJ46620.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae
           bacterium D16]
          Length = 236

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 10/171 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLC-PNGRKNSPEALKLHG 64
           +VFD ET+GLD  ND+IIE+ A+ +        +       F+  P G       + L G
Sbjct: 15  VVFDTETSGLDFDNDQIIELAALRVERTATGGLRIAGKMDTFIKLPEGETLPENIVSLTG 74

Query: 65  ITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           ITDE L+ +    +   S+            IAHNA+FD  F+   L+      +D    
Sbjct: 75  ITDERLQTEGVQPAKAASQIAKLMQNGPTLMIAHNAQFDACFLRGLLRGQKVGRIDWLDS 134

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + T+   RR +P   + L +    Y +T   ++ H A+ D   L +V   M
Sbjct: 135 L-TVYKDRRAYP---HKLANAIIAYDLTGKVQNSHRAIDDVLALFEVLKAM 181


>gi|189467072|ref|ZP_03015857.1| hypothetical protein BACINT_03455 [Bacteroides intestinalis DSM
           17393]
 gi|189435336|gb|EDV04321.1| hypothetical protein BACINT_03455 [Bacteroides intestinalis DSM
           17393]
          Length = 256

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 83/212 (39%), Gaps = 19/212 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG     DRI+EI  +++  + ++  +T +  + P        A
Sbjct: 1   MKLNLKNPIVFFDLETTGTSINVDRIVEICYLKVHPNGNEEAKTLR--INPEMH-IPEGA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP- 117
             +HGI D  + D P+F  +     +  + +  +    N  +FD+  +  E  R   D  
Sbjct: 58  SAVHGIYDADVVDCPTFKEVARTIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVDID 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMV 176
           L   + +D   I  +     +  L++  K Y G  +     H A  D+    +V +  + 
Sbjct: 116 LSRRKFVDVQVIFHKL---EQRTLSAAYKFYCGKNLED--AHTAAADTQATYEVLMAQLD 170

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
              ++      N+  F  E      N+    R
Sbjct: 171 RYPELQ-----NDIAFLAEYSSFNKNVDFAGR 197


>gi|114766856|ref|ZP_01445783.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Pelagibaca bermudensis HTCC2601]
 gi|114540977|gb|EAU44036.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseovarius sp. HTCC2601]
          Length = 401

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 6/120 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
             VFD ETTGL    D +++IGAV +L+            + P G    P + K+H ++D
Sbjct: 277 YTVFDTETTGLLPHKDEVVQIGAVRVLNGRIVPGEVMDQLVDP-GIPIPPSSTKVHQVSD 335

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++ +P  +     F  F   + +  +AHNA FD+ F+     R+  +   P  I+DT+
Sbjct: 336 AMVRGQPDIAEAGRRFHRF--AKGSVIVAHNAPFDMAFLRRHRNRMGVEWDHP--ILDTV 391


>gi|330998364|ref|ZP_08322188.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
 gi|329568470|gb|EGG50275.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
          Length = 164

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 63/169 (37%), Gaps = 10/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   I  +G V + +   T R +   + P     +    ++HG++ +
Sbjct: 4   FAAIDFETA--NGQRSSICSVGLVVVRNREITIRHY-RLVRPYPNYYNYWNTQVHGLSFQ 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                  F  ++ E       +    +AHN  FD G + A  Q    +         TL 
Sbjct: 61  DTAHAAPFPEVWREIIPLI--EGLPLVAHNRPFDEGCLKAAFQAYGMEY-PGYPFHCTLR 117

Query: 129 IARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +R         + L ++  R G  ++    H AL D+   + + +K++
Sbjct: 118 ASRLAFGRDLPNHQLQTVALRCGYDLTQH--HHALADAEACARIALKIL 164


>gi|54298969|ref|YP_125338.1| ribonuclease T [Legionella pneumophila str. Paris]
 gi|53752754|emb|CAH14189.1| ribonuclease T [Legionella pneumophila str. Paris]
          Length = 207

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 19/197 (9%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    +V D+ET G+D + + ++E+  V    +     K   ++   + P  G + 
Sbjct: 13  KNRFRGFLPVVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKESSYFEHILPFPGAEL 72

Query: 56  SPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFIN 107
             ++L  + I         + ++ +   +F    D       Q A  + HNA FD+ FI 
Sbjct: 73  DQKSLAFNQIDPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIK 132

Query: 108 AELQRINKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           A ++R     P       DT ++A          L    +  G+    +  H A+ D+  
Sbjct: 133 AAIKRTGIKSPFHAFTCFDTATLAGLIF--GETVLAKAVQAAGLHFDSQEAHSAIYDAEK 190

Query: 167 LSDVYIKMMVGGSQINF 183
            +D++  M+     +N 
Sbjct: 191 TADLFCLMINKWRMLNI 207


>gi|86157195|ref|YP_463980.1| exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773706|gb|ABC80543.1| Exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 207

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 16/177 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRK--NSPEALKLHGITD 67
             D+ET GLD + D I+ +G V +   S +   +F   + P        P +++ H +  
Sbjct: 21  ALDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFSTLIRPEAAAAAIDPGSIRAHQLVP 80

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   PS  S+ ++  D    + A  + H A  DV F+    +R  +   +P  ++DT+
Sbjct: 81  HDVATAPSLDSVLADV-DLRAREGALLV-HQASLDVAFLKRAYRRCGRRWPEP-PVVDTV 137

Query: 128 S-----IARRKH-----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +       R++      PS   DLN L  R    +    +H AL D+   +++++ +
Sbjct: 138 ALLIKAAKRQRFVNPDAPSMEPDLNLLAARRQRGLPDYGQHDALTDAVATAELFLVL 194


>gi|282856350|ref|ZP_06265629.1| putative DNA polymerase III PolC-type (PolIII) [Pyramidobacter
           piscolens W5455]
 gi|282585721|gb|EFB91010.1| putative DNA polymerase III PolC-type (PolIII) [Pyramidobacter
           piscolens W5455]
          Length = 351

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 80/216 (37%), Gaps = 13/216 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+E+ G        IEI AV      +    +   + P   + S     L GIT +
Sbjct: 15  YVVLDVESQG--YARFCPIEISAVRFAPDGQCLDAYSSLVRPRVARVSRYVSDLTGITTD 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAH-NAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            ++  P    +     DF    ++  + H  A+ D+  I+   Q +    L+ +  +DT 
Sbjct: 73  MVRRAPLPREVIGSLRDFIG--DSVIVGHAVAENDLPIIDHFCQELYHARLE-NLYVDTF 129

Query: 128 SIARRKHP---SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
             A+   P   +   +L +L + +   I  ++ H A  D    + +Y  +     ++   
Sbjct: 130 YWAQALFPALGTGHYNLKALAEHF--VIDAQTFHRAEADCRTTARLYQILHDAAQRLPDA 187

Query: 185 --FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
              +   D   K + K  P  S     K   +R+  
Sbjct: 188 ERIQVLHDFAHKNDPKKPPRKSTKGTAKKTSSRVVD 223


>gi|311108015|ref|YP_003980868.1| exonuclease family protein [Achromobacter xylosoxidans A8]
 gi|310762704|gb|ADP18153.1| exonuclease family protein [Achromobacter xylosoxidans A8]
          Length = 207

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 66/167 (39%), Gaps = 10/167 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   IV D+ETTGL +    I+E  AV + +     R +   +   G        +L GI
Sbjct: 36  RGPFIVADLETTGLSTATCEILEFAAVRVGEAGALEREYTQVVRTRG-PVPSFISRLTGI 94

Query: 66  TDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           T   + +D       FS F DF   ++     HNA FD  F+ A   +        +   
Sbjct: 95  TQAEVDRDGVPVVQAFSSFLDFV--EDLPVFFHNASFDRRFLGAAADQTGLPFA--NSTH 150

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            TL++ARR  P    + L  L +  G   +    H AL D      V
Sbjct: 151 CTLALARRAWPELPSHKLEILARHVG---ASDPTHRALADVRTTVAV 194


>gi|121603395|ref|YP_980724.1| DNA polymerase III subunit epsilon [Polaromonas naphthalenivorans
           CJ2]
 gi|120592364|gb|ABM35803.1| Exonuclease, RNase T and DNA polymerase III [Polaromonas
           naphthalenivorans CJ2]
          Length = 220

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 75/177 (42%), Gaps = 15/177 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+++ D II IGAV + D    T+   ++ + P  R+ S E++++H + +
Sbjct: 42  WVALDCETTGLNTRTDDIIAIGAVRIRDNRIMTSERLELLVRPEKRRLSAESVRVHRLRE 101

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIIDT 126
           + +    S      +   F   +    + +  +FD+  IN      +      P   + +
Sbjct: 102 QDVAQGISADEAMMKLMYFIGSR--PLVGYYLEFDLAMINRVLFPMLGMGLPQPKIEVSS 159

Query: 127 LSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +    + H    +            SL K   + +   S H AL D+ + +  ++K+
Sbjct: 160 MYYDYKFHQLPHHARDSGSIDLRFESLMKDLNLPLW--SAHDALNDAIMAALAFLKL 214


>gi|170730478|ref|YP_001775911.1| ribonuclease T [Xylella fastidiosa M12]
 gi|167965271|gb|ACA12281.1| ribonuclease T [Xylella fastidiosa M12]
          Length = 210

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 80/183 (43%), Gaps = 19/183 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-----QVFLCP-NGRKNSPEALKL 62
            +V D+ET G +  +  ++EI  +  ++   T R +        + P  G    P++L++
Sbjct: 22  PVVVDVETGGFNWNHHALLEIACI-PIEMDDTGRLYPGEVTSTHVIPAPGTDIDPKSLEV 80

Query: 63  HGITDEF-----LKDKPSFSSIFSEFW---DFFNEQNAEWIAHNAKFDVGFINAELQR-- 112
            GI  +       ++K +   IF+        +  Q A  + HNA FD+ F+NA + R  
Sbjct: 81  TGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTA 140

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             ++P     + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ 
Sbjct: 141 YKRNPFHQFSVFDTVTLAGMAY--GQTVLARAVQAAGLDWNATDAHSAVYDAEKTAHLFC 198

Query: 173 KMM 175
            + 
Sbjct: 199 TIT 201


>gi|149190815|ref|ZP_01869080.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
 gi|148835377|gb|EDL52349.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
          Length = 239

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 27/200 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL 60
              N++  +  D ETTGL+   D I+ IG V          +     + P   K   E++
Sbjct: 42  TPLNELEFVALDFETTGLNPDKDGILSIGLVPFNASRIRLKQAAHWTIRPK-AKLEEESV 100

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGIT   + D P+   +  +            + H    + GF+N+ L+R+  + ++ 
Sbjct: 101 VIHGITHNDILDAPTLDEVLGDVLSALA--GKIIVVHYRPIERGFLNSALKRMIGEGIE- 157

Query: 121 SRIIDTLS-----IARR------KHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHL 166
             ++DT+       +R       K    R     L    +RYG+       H AL D+  
Sbjct: 158 FPVVDTMQIESDYQSRLTGGIINKLKGKRADSVRLGQSRRRYGLP--DYPPHHALTDAIA 215

Query: 167 LSDVYIKMMVGGSQINFGFK 186
            +++        +Q+ + F+
Sbjct: 216 TAELL------QAQLAYHFE 229


>gi|149375575|ref|ZP_01893345.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter algicola
           DG893]
 gi|149360280|gb|EDM48734.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter algicola
           DG893]
          Length = 240

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 23/186 (12%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            N +  +  D ETTGLD     I+ IG V   L   +   +    + P        ++ +
Sbjct: 45  LNDVPFVAVDFETTGLDPDKHSIVSIGVVPFTLGRVQLGGSRHWLVKPQ-LPLHQTSVTI 103

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPS 121
           HGIT   +   P    +  E       +    + H    +  F+N  L+ RI ++   P 
Sbjct: 104 HGITHTDIDKAPDLDDVLDEILKSLAGR--IPVVHYRNIERPFLNMALKWRIGEEIRFP- 160

Query: 122 RIIDTLSIARRKHPSSRND--------------LNSLCKRYGITISHRSKHGALLDSHLL 167
            ++DT++I    HP+ +                L     RYG+   H   H AL+D+   
Sbjct: 161 -VMDTMAIEAYLHPNRKRSWWQKLKGQQPISIRLADSRLRYGLP--HYPPHNALVDALAS 217

Query: 168 SDVYIK 173
           +++ + 
Sbjct: 218 AELLMA 223


>gi|319953942|ref|YP_004165209.1| exonuclease rnase t and DNA polymerase iii [Cellulophaga algicola
           DSM 14237]
 gi|319422602|gb|ADV49711.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga algicola
           DSM 14237]
          Length = 258

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 91/202 (45%), Gaps = 12/202 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K       FD+ETTG++   DR++EI  +++  + +K ++T+   + P       E 
Sbjct: 1   MQLKLTRPICFFDLETTGINVAKDRVVEIAILKIHPNGNKESKTW--LVNPE-MVIPDEV 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
           + +HGIT+E + ++P+F  +  + ++    ++++    N  +FD+  +  E+ R   D  
Sbjct: 58  IAVHGITNEKVANEPTFKELSKDIYNMI--KDSDLGGFNSDRFDIPLLAEEMLRSEIDFD 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +R+   + +    H   +  L +  K Y         H A  D++   +V +  +   
Sbjct: 116 MKNRV--AVDVQTIFHKMEKRTLGAAYKFY-CDKDLIDAHSAAADTNATYEVLLSQLDRY 172

Query: 179 SQINFGFKTNEDRFFKEEKKTV 200
            ++    K   +  F   K+TV
Sbjct: 173 PELENNMKMLAE--FSSHKRTV 192


>gi|223986774|ref|ZP_03636758.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM
           12042]
 gi|223961261|gb|EEF65789.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM
           12042]
          Length = 187

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 71/167 (42%), Gaps = 12/167 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS--PEALKLHG 64
           M+    D ET      +   +    + + D  +   +    + P+   ++  P  + +HG
Sbjct: 1   MKWAAIDFETANPSPMSACAV---GLTVFDEGEMVFSDSWLIRPHPYYDAFYPSFIDIHG 57

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT + + D P F  ++ +   + +       AHNA FD+  + +    + +  L  +   
Sbjct: 58  ITPDQVADAPFFPKVYEQLKPWLD--GGVLCAHNAGFDMKVLASCCS-LYRLELPDAPYF 114

Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            T+ ++R+ +P  ++  LN +C   GI + H   H A  D+   + +
Sbjct: 115 CTVKLSRKVYPYLKHHRLNDVCDYMGIQLDH---HDAGSDARGCALI 158


>gi|189463384|ref|ZP_03012169.1| hypothetical protein BACCOP_04103 [Bacteroides coprocola DSM 17136]
 gi|189429813|gb|EDU98797.1| hypothetical protein BACCOP_04103 [Bacteroides coprocola DSM 17136]
          Length = 164

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 10/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   +  +G V + +   T + +   + P     S    ++HG+T +
Sbjct: 4   FAAIDFETA--NKERSSVCSVGIVIVRNGEITEKLY-RLIRPYPNYYSYWNTQVHGLTFQ 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P+F  ++ E            +AHN+ FD G + A  Q  N +  D      T  
Sbjct: 61  DTACAPTFPEVWKEIDPIIA--GLPLVAHNSPFDEGCLKAAFQAYNMEYPD-YTFHCTCR 117

Query: 129 IARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +RR        + L ++  + G  +SH   H AL D+   + + I ++
Sbjct: 118 ASRRTFGKSLPNHQLQTVALKCGYDLSHH--HHALCDAEACAQIAINIL 164


>gi|313768005|ref|YP_004061436.1| hypothetical protein BpV1_006c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599612|gb|ADQ91633.1| hypothetical protein BpV1_006c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 432

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 22/183 (12%)

Query: 7   MRKIVFDIETTGLD-------------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53
           M  I +D ETTGL                  R++ +  V+     +   ++   + P+  
Sbjct: 1   MNYIAWDTETTGLPMGYKKATPDNIHLFDKCRMLTLAFVKYSSKGRELSSYHGLVYPDTF 60

Query: 54  KNSPEALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
               E+  +HGIT E    K   F  +++ F +  +   +  +AHN+ FD     +E  R
Sbjct: 61  DVPQESTNVHGITHEHAIHKGQPFGYVYAAFKEAVSNT-SILVAHNSSFDENCFFSECYR 119

Query: 113 INKD--PLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRY-GITISHRSKHGALLDSHLLS 168
              D  P      +DTL +AR   P    + L ++ K Y G        H AL DS    
Sbjct: 120 RGFDTEPFKHVHFVDTLKMARSVLPGLFNHKLLTVYKHYFGKEFD---AHDALNDSRACG 176

Query: 169 DVY 171
            +Y
Sbjct: 177 TIY 179


>gi|294140465|ref|YP_003556443.1| exonuclease [Shewanella violacea DSS12]
 gi|293326934|dbj|BAJ01665.1| exonuclease [Shewanella violacea DSS12]
          Length = 232

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/200 (25%), Positives = 87/200 (43%), Gaps = 19/200 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALK 61
           R N M     D+E TGLD  +D+I+ IG + +     K +R     +  +G  +  ++  
Sbjct: 44  RANLM---ALDLEMTGLDPNHDQILSIGIIPIEAGMLKLDRAQHKLIRVHG--SVGQSAT 98

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI D  L+D        S F      +    +AH+A  D+ F+   + R+  +P+   
Sbjct: 99  IHGILDRHLQDAIEIEDGISWFLA--QTRGKVLVAHHAPLDISFLQDAISRVKGEPV-TL 155

Query: 122 RIIDTLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDTL++ RR+    +         L +   RYG+ I     H AL+D+    ++ +  
Sbjct: 156 LAIDTLAVERRRLLRKQEVLQTGSLRLGACRIRYGLPIYG--AHDALVDALACGELLLAQ 213

Query: 175 MVGGSQINFGFKTNEDRFFK 194
           +   +Q   G    E  F K
Sbjct: 214 ICAIAQ-GEGLTVGELVFIK 232


>gi|237710481|ref|ZP_04540962.1| exonuclease [Bacteroides sp. 9_1_42FAA]
 gi|237726988|ref|ZP_04557469.1| exonuclease [Bacteroides sp. D4]
 gi|265756507|ref|ZP_06090713.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229433844|gb|EEO43921.1| exonuclease [Bacteroides dorei 5_1_36/D4]
 gi|229455203|gb|EEO60924.1| exonuclease [Bacteroides sp. 9_1_42FAA]
 gi|263233695|gb|EEZ19310.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 162

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 8/160 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   +++   I  +G V + +    +R F   + P          ++HG+T E
Sbjct: 4   FAAIDFETA--NNERTSICSVGVVIVRNGEIADR-FYSLVHPEPDYYLYWNTRIHGLTQE 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P FS ++ +       +    +AHN  FD   + A  +    D  D      T  
Sbjct: 61  DTAHAPVFSEVWKQVAPKI--EGLPLVAHNKAFDERCLKAVFRTYCMDYPDYD-FYCTYQ 117

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            +R+      + L+++   +G  + +   H AL D+   +
Sbjct: 118 ASRKLKGLRNHQLHTVAGFFGFELENH--HHALADAEACA 155


>gi|300813469|ref|ZP_07093813.1| CRISPR-associated endoribonuclease Cas2 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512418|gb|EFK39574.1| CRISPR-associated endoribonuclease Cas2 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 297

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 11/172 (6%)

Query: 2   IRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++KN ++  +V DIET GLD   + IIEIGAV++ +       F   +  N + NS    
Sbjct: 122 VKKNNLKPYVVIDIETDGLDFDKNLIIEIGAVKVENEKF--EEFTRLIKYNKKLNS-TIK 178

Query: 61  KLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            L GI ++ L ++        S F  F   ++   + +N  +D+ F+N     +  +P+ 
Sbjct: 179 DLTGIDEKLLNEEGIELKEALSLFKTFI--KDYPILGYNTSYDIKFLNKSFLDLGMEPIA 236

Query: 120 PSRIIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            +++ D ++  ++ K       L +  + YGI    +  H AL DS L +++
Sbjct: 237 -NKVYDLMTFVKKEKILLPNYKLQTALQAYGIN--KQVPHRALEDSRLTAEL 285


>gi|315224228|ref|ZP_07866068.1| exonuclease [Capnocytophaga ochracea F0287]
 gi|314945961|gb|EFS97970.1| exonuclease [Capnocytophaga ochracea F0287]
          Length = 258

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 90/199 (45%), Gaps = 12/199 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K       FD+ETTG+D   DRI+EI  +++  + +K ++T+   + P        A
Sbjct: 1   MELKLSKPICFFDLETTGIDITKDRIVEISILKVYPNGNKESKTW--LVNPTI-PIPKAA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGITDE +  +P+F  +  +  +    ++++   +N  +FD+  +  E+ R   D  
Sbjct: 58  SDVHGITDERVAGEPTFKELAKQIHNMI--KDSDLAGYNSDRFDIPLLAEEMLRAEVDFD 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +R+  ++ +    H   +  L++  K Y G  +     H A  D++   ++    +  
Sbjct: 116 LGNRV--SVDVQTIFHKMEQRTLSAAYKFYCGKDLID--AHTASADTNATYEILKAQLDR 171

Query: 178 GSQINFGFKTNEDRFFKEE 196
              +    K   +  ++++
Sbjct: 172 YDSLENNIKKLSEFTYRKQ 190


>gi|304383875|ref|ZP_07366332.1| exonuclease [Prevotella marshii DSM 16973]
 gi|304334953|gb|EFM01226.1| exonuclease [Prevotella marshii DSM 16973]
          Length = 163

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   +++   +  +G V + + +    TF   + P     S   +++HG+T  
Sbjct: 4   FAAIDFETA--NNERSSVCSVGLVIVRNGA-VADTFYSLIQPEPNYYSYWCVRVHGLTHA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P FS ++ +       +    +AHN++FD   + A   R+ +         DTL+
Sbjct: 61  DTDAAPVFSEVWKQIEPLI--EGLPLVAHNSRFDESCLRAVF-RVYQMDYPDYSFFDTLT 117

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ARR  P   N  L+++    G  +  ++ H AL D+   + +  K++
Sbjct: 118 AARRTFPHLSNHQLHTVATECGYDL--KNHHHALADAEACAWIARKIL 163


>gi|330446342|ref|ZP_08309994.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490533|dbj|GAA04491.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 249

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 25/201 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              + +  +  D ETTGL++  D II +G V    +    +  Q ++     K   E++ 
Sbjct: 52  TPLSDVEFVALDFETTGLNANKDDIISVGLVPFTIHRIYCKQSQHWVVKPKSKLDEESVI 111

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT   ++  P    I     D         + H    +  F++  L  +  +     
Sbjct: 112 IHGITHSDVQTAPDLRRILESVLDALA--GKVVVVHYKAIERQFMDKAL-HVRLNEGIQF 168

Query: 122 RIIDTLS-------------IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            ++DTL+              AR K        L     RYG+       H AL D+   
Sbjct: 169 PVVDTLAIEAQIQAQQNSGFWARLKGKKPGSVRLGKCRSRYGLPTY--QPHHALTDALAT 226

Query: 168 SDVYIKMMVGGSQINFGFKTN 188
           +++        +QI + F  +
Sbjct: 227 AELL------QAQIAYHFSPD 241


>gi|260060780|ref|YP_003193860.1| DNA polymerase III subunit alpha [Robiginitalea biformata HTCC2501]
 gi|88784910|gb|EAR16079.1| DNA polymerase III, alpha subunit [Robiginitalea biformata
           HTCC2501]
          Length = 1453

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 89/236 (37%), Gaps = 28/236 (11%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R I+I         +    +   + P+G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPASDTDNWPRCIQIAWQLHDGEGRLVEQYDALVRPDGFNIPYD 61

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKD 116
           A ++HGI+ +  +++      +   F    +      +  N  FD+  + AE  R+ ++D
Sbjct: 62  AEQIHGISTDLAREEGLPLEEVLEAFRGALSRTQ-FLVGQNVGFDINVMGAEFYRVADED 120

Query: 117 PLDPSRIIDTLSIARRKH------PSSRNDLNSLCK----RYGITISHRSKHGALLDSHL 166
           PL+   ++DT + +  +          +  L +L +     +G        H A  D   
Sbjct: 121 PLEKFPVLDTCTESTAELCQLPGGRGGKFKLPTLTELHLHLFGEPFE--EAHNATADVEA 178

Query: 167 LSDVYIKMM--VGGSQINFGFKTNE-DRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +  +++++     S    G      + F +    T+  I +  ++    +R   E
Sbjct: 179 TARCFLELLRRRQYSPEQLGVAPGYFEAFDRANPGTIAPIGIAHKNLKKASRKLAE 234


>gi|15838737|ref|NP_299425.1| ribonuclease T [Xylella fastidiosa 9a5c]
 gi|24638168|sp|Q9PBJ8|RNT_XYLFA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|9107281|gb|AAF84945.1|AE004029_5 ribonuclease T [Xylella fastidiosa 9a5c]
          Length = 211

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 80/183 (43%), Gaps = 19/183 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-----QVFLCP-NGRKNSPEALKL 62
            +V D+ET G +  +  ++EI  +  ++   T R +        + P  G    P++L++
Sbjct: 23  PVVVDVETGGFNWNHHALLEIACI-PIEMDDTGRLYPGEVTSTHVIPAPGTDIDPKSLEV 81

Query: 63  HGITDEF-----LKDKPSFSSIFSEFW---DFFNEQNAEWIAHNAKFDVGFINAELQR-- 112
            GI  +       ++K +   IF+        +  Q A  + HNA FD+ F+NA + R  
Sbjct: 82  TGIILDHPFRFAKEEKLALEHIFTPVRATMKKYKCQRAILVGHNAHFDLNFLNAAVTRTA 141

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             ++P     + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ 
Sbjct: 142 YKRNPFHQFSVFDTVTLAGMAY--GQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFC 199

Query: 173 KMM 175
            + 
Sbjct: 200 TIT 202


>gi|258648468|ref|ZP_05735937.1| exonuclease [Prevotella tannerae ATCC 51259]
 gi|260851225|gb|EEX71094.1| exonuclease [Prevotella tannerae ATCC 51259]
          Length = 256

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 13/179 (7%)

Query: 1   MIRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPE 58
           M + N  R I+F DIE TGL    DRI+E+  +++  D  + ++T +    P     S E
Sbjct: 1   MTQLNLTRPIIFFDIEATGLQIARDRIVELSYIKVFPDGREESKTLRF--NPEMH-ISAE 57

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDP 117
           A  ++GI DE + D P+F     E    F  Q+ +    N+  FDV  +  E  R   D 
Sbjct: 58  ATAVNGIKDEDVADCPTFKEKSGELTAIF--QSCDLAGFNSNVFDVPMLVEEFARAGSDF 115

Query: 118 -LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +  S+++D  +I  +  P    +L +  K Y       + H A+ D+    +V    +
Sbjct: 116 DITKSKLVDVQTIYHKLEP---RNLIAAYKFY-CNKDLHNAHTAMADTQATYEVLKAQL 170


>gi|319786534|ref|YP_004146009.1| ribonuclease T [Pseudoxanthomonas suwonensis 11-1]
 gi|317465046|gb|ADV26778.1| ribonuclease T [Pseudoxanthomonas suwonensis 11-1]
          Length = 219

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 17/181 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G D     ++E+ AV +    +      +T      P  G +  P++L++ 
Sbjct: 31  PVVVDVETGGFDWNRHALLEMAAVPIEMDEQGLLVPGKTAAAHFIPAPGTEIDPKSLEVT 90

Query: 64  GI--TDEFLKDKP---SFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI     F   KP   +   +F++          Q A  + HNA FD+ F+NA + R   
Sbjct: 91  GIVLDHPFRLAKPERDALGHVFNQVRAAVRRNGCQRAILVGHNAHFDLNFVNAAVARSGH 150

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++P  P  + DT+++    +   +  L    +  G+    R  H A+ D+   + ++ +
Sbjct: 151 KRNPFHPFSVFDTVTLGGIAY--GQTVLARALQAAGLEWDAREAHSAVYDAEQTAKLFCR 208

Query: 174 M 174
           +
Sbjct: 209 I 209


>gi|229916087|ref|YP_002884733.1| exonuclease RNase T and DNA polymerase III [Exiguobacterium sp.
           AT1b]
 gi|229467516|gb|ACQ69288.1| Exonuclease RNase T and DNA polymerase III [Exiguobacterium sp.
           AT1b]
          Length = 188

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ET   DS++  I  +G   L +      T Q  + P         +++HGI   
Sbjct: 5   ILALDVETANRDSRS--ICSVGWSILQNGD-VVETDQRLVNPE-EDFDMGNIRVHGIRPS 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P+   + S  +    E +   IAHNA FD+G +   + + +           T+ 
Sbjct: 61  DVWDAPALPEVLSSLYPILREVDLV-IAHNASFDMGALRKAIVKYDLFDFPTIEYGCTVK 119

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++R+ +P    + LN++ +   +   H   H A  D+ + + +   MM
Sbjct: 120 LSRKLYPGLPNHKLNTMAEHLNVPFIH---HDAAEDARVCALLMRDMM 164


>gi|327400242|ref|YP_004341081.1| DNA polymerase III subunit epsilon [Archaeoglobus veneficus SNP6]
 gi|327315750|gb|AEA46366.1| DNA polymerase III, epsilon subunit [Archaeoglobus veneficus SNP6]
          Length = 196

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 91/201 (45%), Gaps = 12/201 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEA 59
           M      R  V D+E+TGL+ K D I+ I  + ++      +  F   + P  +K   E+
Sbjct: 1   MTDILSARYSVIDVESTGLNPKKDEIVAIAVIPMVGSRIILSDYFFSLVRP--KKLKGES 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +K HGI  + +   P F SI S        +++  +++  +FD   + +   R+      
Sbjct: 59  IKYHGIDIKAVSKAPEFQSIASRLKHML--EDSIIVSY-TEFDAKILKSHFSRLKIRLEL 115

Query: 120 PSRIIDTLSI--ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
               I  +    AR++  +  +D++ L K+Y +   +R  H AL D++  + ++ + +V 
Sbjct: 116 DCIDISQVEHWIARKEGRAENHDMDGLIKKYSLEEIYR--HSALADAYYTACIFQRQLVK 173

Query: 178 GSQINFGFKTNEDRFFKEEKK 198
            ++  +G    E +   + +K
Sbjct: 174 LAE--YGVTLQELKRIGKREK 192


>gi|94499932|ref|ZP_01306467.1| exonuclease [Oceanobacter sp. RED65]
 gi|94427790|gb|EAT12765.1| exonuclease [Oceanobacter sp. RED65]
          Length = 224

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 15/181 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKL 62
              +R +V D ETTGL  K++ ++ IG V +     K N     ++    ++   ++  +
Sbjct: 38  WKNIRYLVIDTETTGLSPKDNTLLSIGWVAIESGKVKLNSARHRYIK--VKEGVGQSATI 95

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H I D  L+D  + +   +E       +++  + H+A  D+ F+N   +++   PL    
Sbjct: 96  HQIRDCELQDGVTINQAMAEVLTAM--KDSVLVFHHAPMDMAFLNKYCRQLYNAPLLM-P 152

Query: 123 IIDTL--SIARRKHPSSRND-----LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++DTL    +R  H           L    +RYG  +S    H AL D+   +++ +  +
Sbjct: 153 LVDTLNIEKSRHMHNDQARKNGFFRLAHCRQRYG--LSAHQGHNALTDAIATAELLLAQV 210

Query: 176 V 176
            
Sbjct: 211 A 211


>gi|87302916|ref|ZP_01085720.1| exonuclease [Synechococcus sp. WH 5701]
 gi|87282412|gb|EAQ74371.1| exonuclease [Synechococcus sp. WH 5701]
          Length = 187

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 10/166 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N    +  D ET   +   D +  +  + +      +RT+++   P+          +HG
Sbjct: 22  NSSSFVALDFETA--NYSRDSVCSLAIIRVESLKVVSRTYRLIRPPSPHFM---FTDIHG 76

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT   +K +P+F  ++ EF   F E  +   AHNA FD   + A        P   +  +
Sbjct: 77  ITWGDVKSEPTFKELWHEFRPLF-EGISFIAAHNASFDSSVMRACCDTYRIVP-PGAPYL 134

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            T+ +AR+       +L S+C   G+ + H   H AL D+   +++
Sbjct: 135 CTVKLARQTWQLRPANLPSVCAYLGLHLEH---HNALSDAEACANI 177


>gi|88802420|ref|ZP_01117947.1| DNA Pol III Epsilon Chain [Polaribacter irgensii 23-P]
 gi|88781278|gb|EAR12456.1| DNA Pol III Epsilon Chain [Polaribacter irgensii 23-P]
          Length = 275

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 14/179 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M        + FD+ETTG++   DRI+EI  +++  + +K ++T+   + P   +    +
Sbjct: 1   MNLNLSKPIVFFDLETTGVNIATDRIVEIAVLKVFPNGNKESKTW--LVNPE-MEIPQAS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
           + +HGIT+E +  +P+F  +  E          +    N  +FD+  +  EL R   D  
Sbjct: 58  IDVHGITNEKVASEPTFKMLAQEVSKLMA--GCDLAGFNSNRFDIPLLAEELMRAGIDFD 115

Query: 119 DPSRI-IDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMM 175
              R  ID   I    H   +  L +  K Y G  +     HGA  D++   ++    +
Sbjct: 116 MKGRKAIDVQVI---FHKKEQRTLGAGYKFYCGKELEG--AHGAAADTNATYEILKAQL 169


>gi|260893685|ref|YP_003239782.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
 gi|260865826|gb|ACX52932.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
          Length = 233

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 9/175 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +   ++  + FD+ETTGL     D II +GAV L         F   + P GR+  P   
Sbjct: 40  LSLEEVEFVAFDLETTGLKPGAGDEIIALGAVRLRGNELLYPAFDQLVRP-GRRVPPLVE 98

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           KL GI+   L+  P  +S+   F  + + +       N  FD+ F+N  L+   +  L  
Sbjct: 99  KLTGISSGLLRYAPPLASVLPFFLGYLS-RGFPL-GFNVAFDLAFLNQALKPHGR--LSE 154

Query: 121 SRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             ++D  ++AR       +  ++ +     + +  R  H AL D+ + + +++K+
Sbjct: 155 QAVLDVWTVARALDARCEHATMDEIASFLKVNLEGR--HTALGDALIHARMWLKL 207


>gi|71276282|ref|ZP_00652560.1| Ribonuclease T [Xylella fastidiosa Dixon]
 gi|71898489|ref|ZP_00680661.1| Ribonuclease T [Xylella fastidiosa Ann-1]
 gi|182681822|ref|YP_001829982.1| ribonuclease T [Xylella fastidiosa M23]
 gi|71162890|gb|EAO12614.1| Ribonuclease T [Xylella fastidiosa Dixon]
 gi|71731802|gb|EAO33861.1| Ribonuclease T [Xylella fastidiosa Ann-1]
 gi|182631932|gb|ACB92708.1| ribonuclease T [Xylella fastidiosa M23]
          Length = 210

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 80/183 (43%), Gaps = 19/183 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-----QVFLCP-NGRKNSPEALKL 62
            +V D+ET G +  +  ++EI  +  ++   T R +        + P  G    P++L++
Sbjct: 22  PVVVDVETGGFNWNHHALLEIACI-PIEMDDTGRLYPGEVTSTHVIPAPGTDIDPKSLEV 80

Query: 63  HGITDEF-----LKDKPSFSSIFSEFW---DFFNEQNAEWIAHNAKFDVGFINAELQR-- 112
            GI  +       ++K +   IF+        +  Q A  + HNA FD+ F+NA + R  
Sbjct: 81  TGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTA 140

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             ++P     + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ 
Sbjct: 141 YKRNPFHQFSVFDTVTLAGMAY--GQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFC 198

Query: 173 KMM 175
            + 
Sbjct: 199 TIT 201


>gi|332882889|ref|ZP_08450497.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679166|gb|EGJ52155.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 182

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 63/169 (37%), Gaps = 10/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   I  +G V + D   T R +   + P     +    ++HG++ +
Sbjct: 22  FAAIDFETA--NGQRSSICSVGLVVVRDGEITIRHY-RLVRPYPNYYNYWNTQVHGMSFQ 78

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                  F  ++ E       +    +AHN  FD G + A  Q    +         TL 
Sbjct: 79  DTAHAAPFPEVWREIIPLI--EGLPLVAHNRPFDEGCLKAAFQAYGMEY-PGYPFHCTLR 135

Query: 129 IARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +R         + L ++  R G  ++    H AL D+   + + +K++
Sbjct: 136 ASRLAFGRDLPNHQLQTVALRCGYDLTQH--HHALTDAEACARIALKIL 182


>gi|227488080|ref|ZP_03918396.1| DNA polymerase III epsilon subunit (exonuclease) [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091942|gb|EEI27254.1| DNA polymerase III epsilon subunit (exonuclease) [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 427

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 68/184 (36%), Gaps = 15/184 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ET    S++    +I  V+ ++Y +    F   L P    +  E    HGI+ 
Sbjct: 253 KFVAVDFETANRSSRSA--CQIAMVK-VEYGQIVDRFSTLLKPPPGHDEFEFTYFHGISA 309

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D PS+  +      F +       AHNA FD G   +         L P     + 
Sbjct: 310 RDVADAPSWKFVEPYIRAFVDR--LPVYAHNASFDRGVWVSMDSYYGTRTL-PEEFYCSY 366

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             A+R  P      L ++ K   I    R   H A  D+   +     ++V G Q+   +
Sbjct: 367 RTAKRLIPGLENYKLPTVTKA--IAPWFRLDHHRADSDAEACA-----LIVIGLQMLESY 419

Query: 186 KTNE 189
             +E
Sbjct: 420 SEDE 423


>gi|225010791|ref|ZP_03701259.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium
           MS024-3C]
 gi|225004999|gb|EEG42953.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium
           MS024-3C]
          Length = 204

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 15/175 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63
           ++ + IV D ETTG D + +RI+ IGAV L         +F+V+L  +   +   +  +H
Sbjct: 15  SQSKFIVIDTETTGFDYEKERILCIGAVLLEKSQIAVKDSFEVYLTQDHYNSD--STPIH 72

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI  E  K+K +       F  +    NA  IAH+  FDV  IN  L R     L  +++
Sbjct: 73  GILKEEKKEKTAEIEALKSFLTYIG--NAPIIAHHTMFDVNMINKALHRQGLPSL-KNKL 129

Query: 124 IDTLSIARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +DT+ + ++               L+ L  ++ I  S + +H AL D+++ + ++
Sbjct: 130 LDTVVLYKKSLLRSPLIEKKDHYSLDELADKFNI--SKKDRHTALGDAYITALLF 182


>gi|28199095|ref|NP_779409.1| ribonuclease T [Xylella fastidiosa Temecula1]
 gi|32129969|sp|Q87C86|RNT_XYLFT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|28057193|gb|AAO29058.1| ribonuclease T [Xylella fastidiosa Temecula1]
          Length = 211

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 80/183 (43%), Gaps = 19/183 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-----QVFLCP-NGRKNSPEALKL 62
            +V D+ET G +  +  ++EI  +  ++   T R +        + P  G    P++L++
Sbjct: 23  PVVVDVETGGFNWNHHALLEIACI-PIEMDDTGRLYPGEVTSTHVIPAPGTDIDPKSLEV 81

Query: 63  HGITDEF-----LKDKPSFSSIFSEFW---DFFNEQNAEWIAHNAKFDVGFINAELQR-- 112
            GI  +       ++K +   IF+        +  Q A  + HNA FD+ F+NA + R  
Sbjct: 82  TGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTA 141

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             ++P     + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ 
Sbjct: 142 YKRNPFHQFSVFDTVTLAGMAY--GQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFC 199

Query: 173 KMM 175
            + 
Sbjct: 200 TIT 202


>gi|121587354|ref|ZP_01677125.1| ribonuclease T [Vibrio cholerae 2740-80]
 gi|121548437|gb|EAX58497.1| ribonuclease T [Vibrio cholerae 2740-80]
          Length = 190

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 66/173 (38%), Gaps = 18/173 (10%)

Query: 26  IIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHGITDEF--LKDKPSFSS 78
           ++EI AV L      +     T    + P  G      AL+  GI D F  L+   S   
Sbjct: 2   LLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTGIYDPFSPLRGAVSEDH 61

Query: 79  IFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQRINKD--PLDPSRIIDTLSI 129
              E +    ++        A  +AHNA FD  F+ A  +R      P  P    DT ++
Sbjct: 62  ALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKLKRVPFHPFATFDTATL 121

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +       +  L   CK  G+   +R  H AL D+   ++++  ++     + 
Sbjct: 122 SGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIVNQWKALG 172


>gi|325103944|ref|YP_004273598.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM
           12145]
 gi|324972792|gb|ADY51776.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM
           12145]
          Length = 315

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 90/208 (43%), Gaps = 16/208 (7%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEA 59
           ++ N  R + F D+E TG++   DRI+EI  ++  +D S+  +T +  + P       E 
Sbjct: 1   MKLNLKRPLAFFDLEATGVNLGIDRIVEISILKINVDGSEEVKTHR--INPTI-PIPYEV 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPL 118
             +HGI D+ ++++P+F  +  E  DF    +A+   +N+  FD+  +  E  +   +  
Sbjct: 58  SIIHGIYDKDIENEPTFKDLAQEIADFIG--DADLAGYNSNKFDIPMLMEEFLKAGVNFD 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +R    + +    H   +  L +  K Y       + H A  D+    +V +  +   
Sbjct: 116 LDNRHF--VDVQNIFHQMEQRTLKAAYKFY-CDKEIVNAHSAEADTRATYEVLLAQLKK- 171

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLL 206
               +     EDR  K  K  V ++  L
Sbjct: 172 ----YEGHDWEDRGGKISKPVVNDVPAL 195


>gi|317407747|gb|EFV87675.1| exonuclease [Achromobacter xylosoxidans C54]
          Length = 183

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 10/167 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +V D+ETTGL + +  I+E  AV +       R +   +        P   +L GI
Sbjct: 14  RGPFVVADLETTGLSTASCEILEFAAVRVGADGAAEREYAQVVR-TRATVPPFITRLTGI 72

Query: 66  TDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           T+  + +        F+ F DF   ++     HNA FD  F++A   +        +   
Sbjct: 73  TEAEVERQGVPVGQAFAAFLDFV--EDLPVFFHNASFDRRFLDAAALQTGLPFA--NATH 128

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            TL++ARR  P    + L+ L +  G   +    H AL D      V
Sbjct: 129 CTLALARRAWPELPSHKLDVLARHVG---ASEPTHRALADVRTTVAV 172


>gi|71901523|ref|ZP_00683608.1| Ribonuclease T [Xylella fastidiosa Ann-1]
 gi|71728710|gb|EAO30856.1| Ribonuclease T [Xylella fastidiosa Ann-1]
          Length = 210

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 80/183 (43%), Gaps = 19/183 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-----QVFLCP-NGRKNSPEALKL 62
            +V D+ET G +  +  ++EI  +  ++   T R +        + P  G    P++L++
Sbjct: 22  PVVVDVETGGFNWNHHALLEIACI-PIEMDDTGRLYPGEVTSTHVIPAPGTDIDPKSLEV 80

Query: 63  HGITDEF-----LKDKPSFSSIFSEFW---DFFNEQNAEWIAHNAKFDVGFINAELQR-- 112
            GI  +       ++K +   IF+        +  Q A  + HNA FD+ F+NA + R  
Sbjct: 81  TGIILDHPFRFAKEEKLALEHIFTPVRATMKKYKCQRAILVGHNAHFDLNFLNAAVTRTA 140

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             ++P     + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ 
Sbjct: 141 YKRNPFHQFSVFDTVTLAGMAY--GQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFC 198

Query: 173 KMM 175
            + 
Sbjct: 199 TIT 201


>gi|255615473|ref|XP_002539676.1| DNA polymerase III epsilon subunit, putative [Ricinus communis]
 gi|223503630|gb|EEF22707.1| DNA polymerase III epsilon subunit, putative [Ricinus communis]
          Length = 205

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 65/173 (37%), Gaps = 20/173 (11%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPEAL 60
           +R ++ D ETTG D   D++IE+G V              + TF     P G    PE+ 
Sbjct: 2   LRAVILDTETTGTDYVQDKVIELGMVAFDYCPQTGMIGDVHGTFNQLEDP-GFPIPPEST 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K+H ITDE +  K S +    E   F     +  IAHN++FD  F+              
Sbjct: 61  KVHHITDEMVAGK-SIND--EEVEAFIKPA-SIIIAHNSRFDRRFVEPRW-----PIFQS 111

Query: 121 SRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                T +           + L  L  R G    H   H A  D H L +V  
Sbjct: 112 KPWACTFAQIDWDAEGLGSSKLEFLAYRSGF---HYEGHRASTDCHALLEVLH 161


>gi|320533426|ref|ZP_08034111.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134363|gb|EFW26626.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 259

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 4/149 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL    D I+E+  V      +  R++   + P G         +HG+  E
Sbjct: 42  YAVVDLETTGLSPATDSILEVALVVTDAAGRVERSWSTLVDP-GAGVDVGPTHIHGLVAE 100

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDTL 127
            L   P    +        +      +AHNA+FDVGF+   L  R   D       + T+
Sbjct: 101 ELIGAPGLDDVADLLVA--DLAGRAVVAHNARFDVGFLTQALGTRGLLDRGARVPRVCTM 158

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRS 156
             AR    +    L + C+  G+ I    
Sbjct: 159 EWARHFMTTPSRRLTTCCEVAGVEIGRHH 187


>gi|325285402|ref|YP_004261192.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga lytica DSM
           7489]
 gi|324320856|gb|ADY28321.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga lytica DSM
           7489]
          Length = 258

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K       FD+ETTG++   DR++EI  +++  + +K ++T+   + P       E 
Sbjct: 1   MDLKLTRPICFFDLETTGINVAKDRVVEISILKVYPNGNKESKTW--LVNPEMH-IPDEV 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
           + +HGI++E + ++P+F+ +  E +     ++ +   +N  +FD+  +  E+ R   D  
Sbjct: 58  VAVHGISNEKVANEPTFAQLSKEIYAMI--KDCDLGGYNSDRFDIPLLAEEMLRAGVDFD 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVY 171
             + +  ++ +        +  L +  K Y    +++   H A  D++   +V 
Sbjct: 116 MKNTV--SVDVQTIFFKMEKRTLEAAYKFYCNKELTN--AHSAAADTNATFEVL 165


>gi|297571869|ref|YP_003697643.1| exonuclease RNase T and DNA polymerase III [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296932216|gb|ADH93024.1| Exonuclease RNase T and DNA polymerase III [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 228

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 86/232 (37%), Gaps = 20/232 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
                  + FD ETTG+D   +R++    V + +   T      +L   G     +A  +
Sbjct: 1   MWTSQPIVGFDTETTGVDPTRERLVTASVVVVEEDGVTR---HYWLADPGVDIPLQASNV 57

Query: 63  HGITDEFL-KDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPL 118
           HGI+ E   ++      +  E  D   +  A     +A NA +D+  +  EL+R     L
Sbjct: 58  HGISTEQARREGEPVEKVLGEVADLLVQHMAAGHPVVAFNASYDLTLMECELERHGLPTL 117

Query: 119 ------DPSRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                     +ID   + R   ++   +  L +L + YG+     S H A  D      V
Sbjct: 118 AERLGGPVGPVIDPYMLDRSVDRYRRGKRRLENLAEHYGVA-EDDSFHNAEADVLATLRV 176

Query: 171 YIKMMVGGSQIN----FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
              M+    ++           + + + E ++ + + +    D PL   + K
Sbjct: 177 LGSMLRRFPKLAEDTLEHLMEVQQQTYTEFQQYMASRNGQHIDGPLPWPVAK 228


>gi|332532199|ref|ZP_08408080.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038297|gb|EGI74742.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 671

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 4/107 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIETTG     +RI EIG V++  + K   T+   + P  R        L GI+D 
Sbjct: 567 YSVVDIETTGGLKGGNRITEIGIVKVR-HGKVIDTWTSLVNPE-RHIPGFITSLTGISDS 624

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            + + P F+ I     D      + ++AHN  FD GFI  E +    
Sbjct: 625 MVYNAPVFADIVKPLLDKLA--GSIFVAHNVNFDYGFIKKECEVAGH 669


>gi|325281116|ref|YP_004253658.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
 gi|324312925|gb|ADY33478.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
          Length = 163

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 65/170 (38%), Gaps = 9/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
                 D ET   +++   +  IG V +    +   TF   + P     +    ++HG+ 
Sbjct: 2   QNFAAIDFETA--NNERSSVCSIGIVIVR-GEEIVDTFYSLIKPEPEYYNYWCSQVHGLC 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                D P F  ++ +       +    +AHN  FD   + A   R+ +         DT
Sbjct: 59  SNDTTDAPIFPEVWKQIEPLI--KGLPLVAHNKPFDESCLKAVF-RVYQMDYPDYEFYDT 115

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L  +R+  P    + L+++    G  + +   H AL D+   + +  +++
Sbjct: 116 LCASRQAFPELENHQLHTVAATCGYQLENH--HHALADAEACAWIAREIL 163


>gi|300173608|ref|YP_003772774.1| DNA-directed DNA polymerase III subunit epsilon [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887987|emb|CBL91955.1| DNA-directed DNA polymerase III, epsilon chain (Putative)
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 177

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + +    + I    + D    ++ F   + P    +S     +HG+ 
Sbjct: 1   MNFIAMDFETA--NHEKYSAVSIAIAIVRDNQVVDK-FYSLIKPETYFSS-RNTAVHGLR 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + D P F  I+      F + N   +AHNA FD   +   L     +      ++DT
Sbjct: 57  ESDVIDAPKFPEIWQIISPLFRD-NKLVVAHNAAFDNNILKGTLAHYGIEE-PHYMLLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  +R+  P    + LN++    GIT+ H   H AL D+   +++ I
Sbjct: 115 VRTSRKLFPKFENHKLNTVANNLGITLDHH--HNALDDAVAAANILI 159


>gi|256818856|ref|YP_003140135.1| Exonuclease RNase T and DNA polymerase III [Capnocytophaga ochracea
           DSM 7271]
 gi|256580439|gb|ACU91574.1| Exonuclease RNase T and DNA polymerase III [Capnocytophaga ochracea
           DSM 7271]
          Length = 258

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 90/199 (45%), Gaps = 12/199 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K       FD+ETTG+D   DRI+EI  +++  + +K ++T+   + P        A
Sbjct: 1   MELKLSKPICFFDLETTGIDITKDRIVEISILKVYPNGNKESKTW--LVNPTI-PIPKAA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGITDE +  +P+F  +  +  +    ++++   +N  +FD+  +  E+ R   D  
Sbjct: 58  SDVHGITDERVAGEPTFKELAKQIHNMI--KDSDLAGYNSDRFDIPLLAEEMLRAEVDFD 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +R+  ++ +    H   +  L++  K Y G  +     H A  D++   ++    +  
Sbjct: 116 LGNRV--SVDVQTIFHKMEQRTLSAAYKFYCGKDLID--AHTASADTNATYEILKAQLDR 171

Query: 178 GSQINFGFKTNEDRFFKEE 196
              +    K   +  ++++
Sbjct: 172 YDNLENNIKKLSEFTYRKQ 190


>gi|218709246|ref|YP_002416867.1| putative exonuclease [Vibrio splendidus LGP32]
 gi|218322265|emb|CAV18390.1| putative exonuclease [Vibrio splendidus LGP32]
          Length = 238

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 12/172 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            IV D+ETTGLDS+ D I+ +G V+++           ++L  + +  + E   ++ IT 
Sbjct: 51  YIVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAKHIYLDNDSQ-INAETAVINHITP 109

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L++  S       F++    +    +AH    +  FI+  L R       P   +DTL
Sbjct: 110 QMLEEGASIHDAMLTFFE--AAKGKIIVAHACVVEEKFISQYLLRCYGLRAIPLLWLDTL 167

Query: 128 SIARRKHPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            I +    +  N       L    +RYG+     + H AL D+   +++++ 
Sbjct: 168 CIEKSMEKAISNHEEVDLTLAGTRERYGLP--EYNSHNALADAVSTAELFLA 217


>gi|289209028|ref|YP_003461094.1| exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
           K90mix]
 gi|288944659|gb|ADC72358.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
           K90mix]
          Length = 246

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 15/193 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D+ETTGLD ++D I+ IG V +        T    L         ++  +H ITD
Sbjct: 55  RFLAVDLETTGLDPEHDAILSIGWVAMDGVRIDLSTADQRLVRADCPVPEQSAVIHRITD 114

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                  +  S     ++    Q    +AH+A  ++GF+     R+      P  ++DTL
Sbjct: 115 REAAGGTTVDSALDALFEVL--QGRVLVAHHAALELGFLEEACYRLYGVR-PPLPVVDTL 171

Query: 128 SIA-RRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +A R+   + R        L++L  RY +       H AL D+    ++++ ++   SQ
Sbjct: 172 RLAERQLRRAGRPIPADGMRLHTLRGRYNLP--QYRAHDALFDALAAGELFVALV---SQ 226

Query: 181 INFGFKTNEDRFF 193
           ++   +   +R  
Sbjct: 227 LSPEAQVPLERVL 239


>gi|293606916|ref|ZP_06689263.1| DNA polymerase III [Achromobacter piechaudii ATCC 43553]
 gi|292814648|gb|EFF73782.1| DNA polymerase III [Achromobacter piechaudii ATCC 43553]
          Length = 208

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 63/164 (38%), Gaps = 10/164 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   IV D+ETTGL +    I+E  AV +       R +   +            +L GI
Sbjct: 36  RGPFIVADLETTGLSTATCEILEFAAVRVETCGTLAREYTQVVR-TAAPVPSFITRLTGI 94

Query: 66  TDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           T   + +        FS F +F   ++     HNA FD  F+ A   R        +   
Sbjct: 95  TQAEVDRHGVPVMQAFSSFLEFV--EDLPVFFHNASFDRRFLGAAADRTGMPFA--NATH 150

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            TL++ARR  P    + L+ L +  G +      H AL D    
Sbjct: 151 CTLALARRAWPELPSHKLDILARHVGASNP---THRALADVRTT 191


>gi|171059184|ref|YP_001791533.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170776629|gb|ACB34768.1| Exonuclease RNase T and DNA polymerase III [Leptothrix cholodnii
           SP-6]
          Length = 218

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 75/177 (42%), Gaps = 15/177 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGLD   D II IGAV ++     T+   ++ + P  RK S +++++H + +
Sbjct: 41  WVALDCETTGLDVGRDEIIAIGAVRIVGNRIMTSERLELLVRPEKRKLSADSVRVHRLRE 100

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDT 126
           + +           +   F   +    + +  +FD+  IN      +      P   + +
Sbjct: 101 QDVAQGLKPEEAVMQLMHFIGSR--PLVGYYLEFDLAMINRVAWPMLGMGLPQPRIEVSS 158

Query: 127 LSI---ARRKHPSSRNDL------NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L      R+  P  +  +      ++L K   + +  R  H AL D+ + +  Y+K+
Sbjct: 159 LYHDYKHRQLLPYQQQSVNIDLRFDTLMK--DLDLPQRDAHDALNDAVMAALAYLKL 213


>gi|227541474|ref|ZP_03971523.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182756|gb|EEI63728.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 427

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 10/169 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ET    S++    +I  V+ ++Y +    F   L P    +  E   LHGI+ 
Sbjct: 253 KFVAVDFETANRSSRSA--CQIAMVK-VEYGQIVDRFSTLLKPPPGHDEFEFTYLHGISA 309

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D PS+  +      F +       AHNA FD G   +         L P     + 
Sbjct: 310 RDVADAPSWKFVEPYIRAFVDR--LPVYAHNASFDRGVWVSMDSYYGTRTL-PEEFYCSY 366

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKM 174
             A+R  P      L ++ K   I    R   H A  D+   + + I +
Sbjct: 367 RTAKRLIPGLENYKLPTVTKA--IAPWFRLDHHRADSDAEACALIVIGL 413


>gi|213963506|ref|ZP_03391759.1| putative DNA polymerase III, alpha subunit subfamily
           [Capnocytophaga sputigena Capno]
 gi|213953786|gb|EEB65115.1| putative DNA polymerase III, alpha subunit subfamily
           [Capnocytophaga sputigena Capno]
          Length = 1485

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 74/198 (37%), Gaps = 25/198 (12%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R ++I      ++          + P+G     +
Sbjct: 2   YLIFDTETTGLPRRWDAPLTDSDNWPRAVQIAWQLHDEWGALIEHQDFLIKPDGFDVPYD 61

Query: 59  ALKLHGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
           A K+HGI+ +  +      + +F  F +  + +    +  N  FD+  + AE  R   + 
Sbjct: 62  AEKVHGISTQLAETQGVPIAEVFKAFNEALS-KAKYVVGQNIGFDINIMGAEFHRYGVES 120

Query: 117 PLDPSRIIDTLS------IARRKHPSSRNDLNSLCK----RYGITISHRSKHGALLDSHL 166
           PL    +IDT +               R  L +L +     +G+  +    H A  D   
Sbjct: 121 PLTQMPVIDTCTETTANLCQIAGGKGGRYKLPTLTELHSFLFGVPFA--EAHNATADVEA 178

Query: 167 LSDVYIKMMVGGSQINFG 184
            +  + +++  G     G
Sbjct: 179 TTRCFFELIRRGEGFQEG 196


>gi|212693424|ref|ZP_03301552.1| hypothetical protein BACDOR_02940 [Bacteroides dorei DSM 17855]
 gi|212664068|gb|EEB24642.1| hypothetical protein BACDOR_02940 [Bacteroides dorei DSM 17855]
          Length = 162

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 8/160 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   +++   I  +G V + +    +R F   + P          ++HG+T E
Sbjct: 4   FAAIDFETA--NNERTSICSVGVVIVRNGEIADR-FYSLVHPEPDYYLYWNTRIHGLTQE 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P FS ++ +       +    +AHN  FD   +    +    D  D      T  
Sbjct: 61  DTAHAPVFSEVWKQVAPKI--EGLPLVAHNKAFDERCLKTVFRTYCMDYPDYD-FYCTYQ 117

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            +R+      + L+++   +G  + +   H AL D+   +
Sbjct: 118 ASRKLKGLRNHQLHTVAGFFGFELENH--HHALADAEACA 155


>gi|254510966|ref|ZP_05123033.1| exonuclease [Rhodobacteraceae bacterium KLH11]
 gi|221534677|gb|EEE37665.1| exonuclease [Rhodobacteraceae bacterium KLH11]
          Length = 334

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 15/169 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D+ET   +S    I +IG     D   T  TF   + P      P  + +HGI  
Sbjct: 45  RFVALDVETA--NSDASSICQIGFAVS-DGQGTILTFGTLIHPET-SFDPFNIGIHGIDA 100

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +   P F  +   F  F        + H + FD   +NA   R +   L  +   D++
Sbjct: 101 DAVSTAPVFPEVLQTFRAFLERH--PLVQH-SSFDKRAVNAACDRYDIPKLRSN-WHDSV 156

Query: 128 SIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +ARR  P  +    + L +L +  G+   H   H A+ D+   + V +
Sbjct: 157 VMARRAWPELKGNGGHGLANLKEVLGLEFDH---HDAIEDAKAAAHVVL 202


>gi|226227968|ref|YP_002762074.1| exonuclease [Gemmatimonas aurantiaca T-27]
 gi|226091159|dbj|BAH39604.1| exonuclease [Gemmatimonas aurantiaca T-27]
          Length = 323

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 79/214 (36%), Gaps = 18/214 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQ---VFLCPNGRKNSPEALKL 62
           MR +V D+ETTGLD+  D IIE GAV    D      T      +    GR    EA  +
Sbjct: 47  MRGLVVDVETTGLDTARDVIIEFGAVPFDFDGEGRVYTVHPPLSYFEDPGRPIPAEASAI 106

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GITD+ ++ K               +Q    IAHNA FD   +   L          S+
Sbjct: 107 TGITDDDVRGK-RIDDAA--VLAAL-DQAVLVIAHNAGFDRRMLERRLPAFAAKHWACSQ 162

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
                 +   +  S    L+ L   Y I  +  + H A  D        + ++     ++
Sbjct: 163 Q----EVPWVRFGSRSQKLDYLL--YRIARAFHTGHRAADDCLAT----LHLLASAHPVS 212

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
               +++    +   +  P   LL+  +    R+
Sbjct: 213 PSDSSDDVEDVRSAVQIAPLQLLLQHARRRTYRL 246


>gi|157874229|ref|XP_001685602.1| DNA polymerase III epsilon subunit-like exonuclease;
           exonuclease-like protein [Leishmania major]
 gi|68128674|emb|CAJ08806.1| exonuclease-like protein [Leishmania major strain Friedlin]
          Length = 188

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 30/168 (17%)

Query: 37  YSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA--- 92
           +++  R F  ++ P + R+ S  A  +HGIT E +++   +  +  E   +     A   
Sbjct: 9   WTRGGRVFHRYVRPSDPRRISAAAAAVHGITWETVQNCSPWPVVARELVAYMALVGADAP 68

Query: 93  ---------------------EWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTLSI 129
                                  +AHNA FD  F+   L+R         R     T   
Sbjct: 69  VSASAQLEAAQLGGQRAVHLPPLVAHNASFDARFLEHHLRRCGYQIFWHPRYPLTCTRQW 128

Query: 130 ARRKHPSSRNDLNSLCKRYGITI-SHRSK--HGALLDSHLLSDVYIKM 174
           A+  +P   N+L++LC    I   + R+   H AL D+ L + ++++M
Sbjct: 129 AQVAYPHLANNLDALCAFLSIDWAADRAANGHDALTDATLTALLFLQM 176


>gi|153808149|ref|ZP_01960817.1| hypothetical protein BACCAC_02435 [Bacteroides caccae ATCC 43185]
 gi|149129052|gb|EDM20268.1| hypothetical protein BACCAC_02435 [Bacteroides caccae ATCC 43185]
          Length = 200

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 65/169 (38%), Gaps = 10/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + K   +  +G V +      N+ +   + P     +     +HG+T +
Sbjct: 4   FAAIDFETA--NGKRTSVCSVGIVIVKGGRIVNKIY-RLIRPAPNYYTQWTTAIHGLTYD 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              +   F  +++E       +    +AHN+ FD G + A  +          +   T  
Sbjct: 61  DTMEADDFPEVWAEIKPLL--EGLPLVAHNSPFDEGCLRAVHELYGM-TYPNYKFYCTCR 117

Query: 129 IARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +R+        + L+++ +R G  + +   H AL D+   + + + ++
Sbjct: 118 TSRKVFGKDLPNHQLHTVAERCGYNLENH--HHALADAEACAQIALLII 164


>gi|307578072|gb|ADN62041.1| ribonuclease T [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 198

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 80/183 (43%), Gaps = 19/183 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-----QVFLCP-NGRKNSPEALKL 62
            +V D+ET G +  +  ++EI  +  ++   T R +        + P  G    P++L++
Sbjct: 10  PVVVDVETGGFNWNHHALLEIACI-PIEMDDTGRLYPGEVTSTHVIPAPGTDIDPKSLEV 68

Query: 63  HGITDEF-----LKDKPSFSSIFSEFW---DFFNEQNAEWIAHNAKFDVGFINAELQR-- 112
            GI  +       ++K +   IF+        +  Q A  + HNA FD+ F+NA + R  
Sbjct: 69  TGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTA 128

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             ++P     + DT+++A   +   +  L    +  G+  +    H A+ D+   + ++ 
Sbjct: 129 YKRNPFHQFSVFDTVTLAGMAY--GQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFC 186

Query: 173 KMM 175
            + 
Sbjct: 187 TIT 189


>gi|255524855|ref|ZP_05391804.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|255511425|gb|EET87716.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
          Length = 306

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 71/169 (42%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET   + + +    IG + ++            + P   +  P  + +HGI 
Sbjct: 1   MNFTAIDFETA--NERRNSPCSIG-IAVVKNGHVVEKIHHLIRPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++++P F  ++ +   +F+      IAHNA FD+  +    +  + D L   + I T
Sbjct: 58  PAVVENEPEFDKVWEKIKHYFD--GNLVIAHNASFDISVLRKTAELYDID-LPKFKYICT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  +    N  LN++    G    H   H AL D+   S++ + +
Sbjct: 115 MKLSKNFYRGIENAKLNTVNDFLGYEFKH---HDALYDALACSNILLNI 160


>gi|153933783|ref|YP_001382659.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935123|ref|YP_001386211.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str.
           Hall]
 gi|152929827|gb|ABS35327.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. ATCC 19397]
 gi|152931037|gb|ABS36536.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. Hall]
          Length = 309

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +FN  N   IAHNA FD+  + + L+  N   +     I T
Sbjct: 58  PHMVQDELEFDKIWGKIKGYFN--NNLVIAHNASFDMSVLRSTLKLYNIK-MPSFEYICT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G        H AL D+   S++ I +
Sbjct: 115 MKLSKNFYSNIDNARLNTVNNFLGYKF---KYHDALADAMACSNILINI 160


>gi|317050855|ref|YP_004111971.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
 gi|316945939|gb|ADU65415.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
          Length = 250

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 73/195 (37%), Gaps = 23/195 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +++  +  D ETTG D K   I+ IG V +          + ++     +   +++ +HG
Sbjct: 56  SQVPLLALDFETTGFDPKRHGIVSIGLVPMSLQRIRCAEARHWIVKPRVQLESQSIVVHG 115

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRI 123
           IT   +   P  + I  E  +         + H+   +  F++A L+ RI +       +
Sbjct: 116 ITHSDVATAPDLARILDELLEAMA--GHVMVVHHRGIERSFLDAALKARIGEGI--QFPV 171

Query: 124 IDTLSIARRKHPSSRNDLNS------------LCKRYGITISHRSKHGALLDSHLLSDVY 171
           IDT+ +  R H      L +               R    + H   H AL D+   +++ 
Sbjct: 172 IDTMELEARLHRQKPPGLLARLLGRKPVSIRLAASRARCNLPHYRPHHALTDALATAELL 231

Query: 172 IKMMVGGSQINFGFK 186
                  +QI   F 
Sbjct: 232 ------QAQIAHHFS 240


>gi|56460528|ref|YP_155809.1| DNA polymerase III subunit epsilon [Idiomarina loihiensis L2TR]
 gi|56179538|gb|AAV82260.1| 3'-5' exonuclease/DnaQ family enzyme [Idiomarina loihiensis L2TR]
          Length = 248

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 24/197 (12%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           NK   +  D ETTGLD +   I+ I A+ +          + ++    R  + E++ +HG
Sbjct: 54  NKTPMVAVDFETTGLDPEQHGIVSIAAIPMTTERILFSEAKSWVVKPRRSLTDESVVIHG 113

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT   ++  P   SI  E  +        W+ H    +  F+   ++    + +    +I
Sbjct: 114 ITHSEIEHAPDLESIIDELLELVA--GKVWVVHYHGIERPFLQRGIKERLHENI-QFPLI 170

Query: 125 DTLSIARRKHPSS-------------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           DT+ I  R H                   L     RY +       H AL D+   +++ 
Sbjct: 171 DTMEIEARFHRKPLSFWQKLLGKKPESIRLADSRTRYNLPFY--PPHNALTDALACAELL 228

Query: 172 IKMMVGGSQINFGFKTN 188
                  +QI + F+ +
Sbjct: 229 ------QAQIAYHFEPD 239


>gi|307565674|ref|ZP_07628146.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
 gi|307345619|gb|EFN90984.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
          Length = 892

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 12/178 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +    +   +VFD ETTGLD  ND IIEI A+++ +  +  +T  +++  +        +
Sbjct: 502 LTNYQQQDIVVFDTETTGLDVFNDDIIEISAIKIRNGKQIGKTLDLYIYTDKTILPKLGI 561

Query: 61  K---LHGITDEFLKDKP--SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           K   L+ I +E L      +     +EF  F    N+  +AHN  +D   ++  L+R   
Sbjct: 562 KDNPLYEIYNEKLNSGELINIKEALNEFLKF--ADNSILMAHNINYDYHILDNCLRRYTG 619

Query: 116 DPLD--PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           D L+    +  D+L I R   PS R   L  L  ++   +   + H A+ D     ++
Sbjct: 620 DNLNNYNFKYFDSLKIIRLLEPSLRSYKLEHLLDKF--QLEGVNSHQAIDDVWATVNL 675


>gi|149927335|ref|ZP_01915591.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
 gi|149824049|gb|EDM83272.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
          Length = 248

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 22/182 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+ + D II IGAV L+         + ++     K   + + +HGIT   
Sbjct: 56  LAIDFETTGLNPEYDDIISIGAVPLMSNRIMLGQSRYWILKPAAKLRSDTIPIHGITHSD 115

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTLS 128
           + + P    +  E     + + A  +AH A  +  F++  LQ R+ +  + P  +IDT+ 
Sbjct: 116 IANAPDLIDVLPELLKMMSGKLA--VAHCAAIETRFLDTALQYRVGEGIVFP--VIDTMG 171

Query: 129 IAR------------RKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           I R            R    S+     L  + KRY +       H AL+D+   +++   
Sbjct: 172 IERHFSDHQNSGLFERMFRKSQGASLRLPDIRKRYKLPFY--RPHNALVDALACAELLQA 229

Query: 174 MM 175
            +
Sbjct: 230 QI 231


>gi|294853583|ref|ZP_06794255.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
 gi|294819238|gb|EFG36238.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
          Length = 191

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 4/149 (2%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I   K R IVFD ETTG+    DRII +GAV++       ++    +    + +SP+A  
Sbjct: 33  IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 90

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG  +   + +  F  + +    +F+  + E +AHNA+FD+ +I  E ++   D LD  
Sbjct: 91  VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 148

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGI 150
            +  T+  ARR        L+   +R  +
Sbjct: 149 PVYCTMDGARRLWRGDSTKLDHCSQRLAL 177


>gi|332885444|gb|EGK05693.1| hypothetical protein HMPREF9456_02495 [Dysgonomonas mossii DSM
           22836]
          Length = 256

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 10/177 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    +   I FD+ETTG D+  DRI+E+  +++    K        + P        A 
Sbjct: 1   MELNLRNPIIFFDLETTGTDTVKDRIVELSYLKVYPNGK-EEMKTRRINPE-MPIPAGAT 58

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
            +HGI+DE +KD P+F  I     D    +  +    N ++FD+  +  E  R + D   
Sbjct: 59  AIHGISDEDVKDCPTFKQIAKSLAD--QMEGCDLAGFNSSRFDIPLLAEEFLRADVDIDF 116

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              ++ID   I    H   +  L +  K Y       + H A  D+    +V    +
Sbjct: 117 SKRKMIDVQII---FHKKEQRTLEAAYKFY-CDKDLDNAHSAEADTLATYEVLKAQL 169


>gi|157370180|ref|YP_001478169.1| exodeoxyribonuclease X [Serratia proteamaculans 568]
 gi|157321944|gb|ABV41041.1| Exonuclease RNase T and DNA polymerase III [Serratia proteamaculans
           568]
          Length = 222

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 73/174 (41%), Gaps = 25/174 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D ET GL      ++E+ +V+L+D  +        + P+ R    EA+ +H IT
Sbjct: 1   MNLRVIDTETCGL---EGGVVEVASVDLIDG-QIANPMSDLISPD-RPIGIEAMAIHHIT 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ ++ KP  +     +     + +  ++AHNA FD G +          P      I T
Sbjct: 56  EQMVEGKPRIAVAIGRY-----QGSPYYVAHNAAFDRGVL----------PEMHGAWICT 100

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS-----KHGALLDSHLLSDVYIKMM 175
           + +AR  +P  +     L     + +          H AL D ++ + +  +++
Sbjct: 101 MKLARNLYPDIKYGNQYLRYALNLDVQLPQDTTLYPHRALYDCYVTAALLQRII 154


>gi|325066430|ref|ZP_08125103.1| DNA polymerase III subunit epsilon-like protein [Actinomyces oris
           K20]
          Length = 259

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 59/157 (37%), Gaps = 4/157 (2%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M     +   V D+ETTGL    D I+E+  V      +   ++   + P G        
Sbjct: 34  MAEAAGVGYAVVDLETTGLSPTTDSILEVALVLTDAAGRVEHSWSTLIDP-GVGVDVGPT 92

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLD 119
            +HG+  E L   P F  +        +      +AHNA+FDVGF+   L  R   D   
Sbjct: 93  HIHGLVAEELIGAPGFDEVADLLVA--DLAGRPVVAHNARFDVGFLTQALGTRGLLDRGA 150

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
               + T+  A     +    L + C+  G+ I    
Sbjct: 151 RVPRVCTMEWAHHFMTTPSRRLTTCCEVAGVEIGRHH 187


>gi|170758900|ref|YP_001785582.1| DNA polymerase III subunit epsilon [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405889|gb|ACA54300.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 309

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 10/169 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K +    IG V + D     +     + P   +  P  + +HGI 
Sbjct: 1   MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D+  F  I+ +   +FN  N    AHNA FD+  +   L+  N   +     I T
Sbjct: 58  PRMVQDELEFDKIWGKIKHYFN--NNLVTAHNASFDISVLRNTLKLYNIK-MPSFDYICT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +++  + +  N  LN++    G    H   H AL D+   S++ + +
Sbjct: 115 MKLSKNFYSNIDNVRLNTVNNFLGYKFKH---HDALADAMACSNILLNI 160


>gi|34557013|ref|NP_906828.1| DNA polymerase III subunit epsilon [Wolinella succinogenes DSM
           1740]
 gi|34482728|emb|CAE09728.1| DNA POLYMERASE III, EPSILON SUBUNIT, PUTATIVE [Wolinella
           succinogenes]
          Length = 203

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 9/175 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD ETTGLD K D II + AV++ D    T+   Q+F+ P G  N  +++K+H I   
Sbjct: 32  VAFDCETTGLDPKKDEIISLAAVKIRDNKILTSEKLQLFVKPKGEINI-DSIKIHHIRAC 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + +  +       F DF   +    + +  +FDV  IN  +  +    L P ++I+  +
Sbjct: 91  DVSNGITSEEAALRFLDFLGNR--PLVGYYLEFDVALINRIIHPLLGITL-PQKMIEVSA 147

Query: 129 IARR----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           I         P    DL        + +   ++H AL D+   + +Y+K+     
Sbjct: 148 IYYDKKIGLIPEGHVDLRLRSILRDLKLPELTQHDALGDAITSALIYLKLTQNQK 202


>gi|83649371|ref|YP_437806.1| putative exonuclease [Hahella chejuensis KCTC 2396]
 gi|83637414|gb|ABC33381.1| putative exonuclease [Hahella chejuensis KCTC 2396]
          Length = 189

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 64/168 (38%), Gaps = 17/168 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETTGLD     +IE+  +++         F   + P       EA  +HGIT E 
Sbjct: 19  VVLDTETTGLD-DQAEVIEVSVMDMRGKVL----FDQLVRPLN-PVPDEAADIHGITSES 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L DKP+F  ++       +      +A+NA FD   +           ++        + 
Sbjct: 73  LADKPNFPDVYHSLKRVIS--GKTVVAYNADFDSRLLMQTCAAYGLPVIEADWQCAMNAY 130

Query: 130 AR-RKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            R RK P ++        L     + GI +     H AL D     +V
Sbjct: 131 TRYRKEPDAKRGGYRRQSLAKAAAQMGIEV--HGAHRALADCFTTVEV 176


>gi|220907840|ref|YP_002483151.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7425]
 gi|219864451|gb|ACL44790.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7425]
          Length = 164

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +   +    +G V + +     + +   +CP   +   E   +HGI   
Sbjct: 4   FVAIDFETA--NRAKESACAVGLVRVENLQIVQKAYY-LICPP--QPHFEFTHIHGIRWT 58

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P+F  ++SE        +    AHNA FD   ++A        P      I T+ 
Sbjct: 59  DVAAQPTFGDLWSELHPLIAGTD-FIAAHNAGFDRSVLHACCNSYGI-PRPAQNFICTVQ 116

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +ARR        L  +C+  G+ + H   H AL D+   + + I   
Sbjct: 117 LARRTWSLYPTKLPDVCRFLGLELDH---HHALSDAEACAQIVIAAT 160


>gi|145588723|ref|YP_001155320.1| DNA polymerase III subunit epsilon [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047129|gb|ABP33756.1| Exonuclease, RNase T and DNA polymerase III [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 218

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 80/176 (45%), Gaps = 15/176 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D ETTGL+   D+II IGAV+++     T+   ++ + P+ ++ S E++K+H + +
Sbjct: 42  WVVIDCETTGLNVAQDQIISIGAVKIVGNQLITSERLELLVKPD-KEVSAESVKIHRLRE 100

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + +        ++   F   +    + +  +FD+  ++  + R+    L   +I  + 
Sbjct: 101 LDIANGLDPEVAVAKLMQFIGSR--PIVGYYLEFDMAMLHKIIWRMLGQGLPQPKIEVSA 158

Query: 128 SIARRKHPSSRNDL---------NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                K+     +L         ++L K   + +  R  H AL D+ +    +IK+
Sbjct: 159 MYYEYKNAQLPINLRGQMIDLRFDTLMKDLNLPV--RDAHDALNDAVMTGMAFIKL 212


>gi|293372861|ref|ZP_06619235.1| exonuclease [Bacteroides ovatus SD CMC 3f]
 gi|292632150|gb|EFF50754.1| exonuclease [Bacteroides ovatus SD CMC 3f]
          Length = 266

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 82/213 (38%), Gaps = 19/213 (8%)

Query: 2   IRKNKMRK----IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           I +N+++       FD+ETTG +   DRI+EI  +++  + ++  +T +  + P      
Sbjct: 5   IIRNEIKPEKSHCFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTLR--INPEMH-IP 61

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINK 115
             +  +HGI D  + D P+F  +        + +  +    N  +FD+  +  E  R   
Sbjct: 62  EASSAIHGIYDADVVDCPTFKEVAKNIAR--DIEGCDLAGFNSNRFDIPVLAEEFLRAGV 119

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D     R    + +    H   +  L++  K Y    +    H A  D+    +V    +
Sbjct: 120 DIDMTKRKF--VDVQVIFHKMEQRTLSAAYKFY-CDKNLEDAHTAEADTRATYEVLKAQL 176

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
              S +      N+  F  +      N+    R
Sbjct: 177 DRYSDLQ-----NDIAFLADYSSFSKNVDFAGR 204


>gi|288959282|ref|YP_003449623.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
 gi|288911590|dbj|BAI73079.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
          Length = 209

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 74/208 (35%), Gaps = 12/208 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   +        IG V  ++  +   T +  + P   + +     +HGI  E 
Sbjct: 9   VAIDFETA--NETRTSACSIG-VAWIEDGRVTATEEHLIRPREPRFNSFNSAIHGIRAED 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D P F  +++   +    +    +AHNA FD+  +   L     D       + T+ +
Sbjct: 66  VADAPEFPEVWATLRERVRGR--LILAHNAAFDISVLRHTLTDYGLDW-PACDYLCTVML 122

Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           ARR  P+ + + LN L    GI + H   H A  D+     +   +         GF   
Sbjct: 123 ARRAWPALTGHRLNHLADFLGIALDH---HHAGSDAEACGRI--ALAAALEMGLRGFGEI 177

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           E       +      S  K  K    R 
Sbjct: 178 ERTGISLGRIAPGGYSPCKGAKTPPRRP 205


>gi|325970703|ref|YP_004246894.1| exonuclease RNase T and DNA polymerase III [Spirochaeta sp. Buddy]
 gi|324025941|gb|ADY12700.1| Exonuclease RNase T and DNA polymerase III [Spirochaeta sp. Buddy]
          Length = 197

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 9/172 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET            +      +      T+   + P      P    +H + 
Sbjct: 1   MNYVAIDFETANGYPGGA--CSVALARFDEEGMLLDTYYSLIHPKHPYFDPSMTAVHQLK 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE     P F  I+ +  DF  +     +AHNA FD+G +    +  + +       + T
Sbjct: 59  DEECLAAPEFDVIWPQMRDFIGKD--LLVAHNAVFDMGVLKGCFEVYDLEA-RQMTYLCT 115

Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L+IAR+  P      L+ L   YG+       H AL D+ +   +  K+  G
Sbjct: 116 LTIARKVWPKMLSYKLSYLVDYYGMEY---QAHYALDDAIMCGKMMHKLCYG 164


>gi|317495208|ref|ZP_07953578.1| exonuclease [Gemella moribillum M424]
 gi|316914630|gb|EFV36106.1| exonuclease [Gemella moribillum M424]
          Length = 623

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 13/208 (6%)

Query: 1   MIRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M+R+ K +   + DIE T    +   II+  A ++    +   +   ++ P     +   
Sbjct: 1   MVRELKGKYFCIVDIELT----EEKEIIQFAAKKIDFNFRVINSINYYIKPIQSDITSFV 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             L GIT+E L+DKPSF  +    +++   ++   + H  + D   +    Q I  +   
Sbjct: 57  TDLTGITNEILRDKPSFRKVSKVLYEYI--KDGILVCHGLQSDYLILKKHFQDIGIEY-S 113

Query: 120 PSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           PS  +DT+ +AR   P  S   L+ L     I  S  + H A++D    + +   +    
Sbjct: 114 PSMSLDTVELARLFLPTQSSYRLSDLAASLNI-YSSDNYHNAVIDVKATAKLLETI---A 169

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLL 206
            +I    K N ++  K  KK   NI+L 
Sbjct: 170 LKIPLIQKENYNKICKLLKKVDSNIALF 197


>gi|328473671|gb|EGF44506.1| hypothetical protein VP10329_13450 [Vibrio parahaemolyticus 10329]
          Length = 254

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 68/185 (36%), Gaps = 25/185 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M + +    I+ D ETTGL S+   I+E  A+               + P       EA 
Sbjct: 48  MKKLSTQNAIILDTETTGLGSQ-AEIVEFTAICAHTGKVIVNE---LVKPTC-SIPAEAT 102

Query: 61  KLHGITDEFLKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----- 114
            +HGITDE +KD P F  +FS  F    N +    I +N+ FD   I   L +       
Sbjct: 103 AIHGITDEDVKDAPDFHLVFSNHFLPLLNGR--PIIIYNSDFDTRLIIQSLDKHCNAAYV 160

Query: 115 ---KDPLDPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALL 162
               D      +     +   +     N          L++ C +  + +S  + H AL 
Sbjct: 161 QSVHDLFFKFCVPQCAMLWYAEFFGVWNEHHEDYKWQSLSNACAQQNVDVSDLTAHRALA 220

Query: 163 DSHLL 167
           D  + 
Sbjct: 221 DCEMT 225


>gi|298372076|ref|ZP_06982066.1| exonuclease [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274980|gb|EFI16531.1| exonuclease [Bacteroidetes oral taxon 274 str. F0058]
          Length = 252

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 92/218 (42%), Gaps = 13/218 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K   + FD+ETTG++   DRI+E+  +++  + +KT++T +  + P       ++
Sbjct: 1   MKLNLKNPIVFFDLETTGINVSTDRIVELTYLKVEPNGNKTSKTIK--INPEMH-IPEQS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDP- 117
             +HGI D+ + D P+F  I +      + +  +    N+  FD+  +  E  R+  D  
Sbjct: 58  SAIHGIYDQDVADCPTFRQIAANLAK--DIEGCDLAGFNSVNFDIPLLVEEFLRVGVDID 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   + +D + I  +K P    +L +  K Y    +  + H +  D+    ++  + +  
Sbjct: 116 LKKRKFVDVMVIFYKKEP---RNLAAAYKFY-CDKTLENAHSSEADTLATFEILEEQLNK 171

Query: 178 GSQINFGFK-TNEDRFFKEEKKTVPNISLLKRDKPLFT 214
              +       +E     +       I    R + +F 
Sbjct: 172 YPDLENSVDFLSEFSSHNKHADYAGRIIYDSRKREVFN 209


>gi|189465280|ref|ZP_03014065.1| hypothetical protein BACINT_01626 [Bacteroides intestinalis DSM
           17393]
 gi|189437554|gb|EDV06539.1| hypothetical protein BACINT_01626 [Bacteroides intestinalis DSM
           17393]
          Length = 164

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 9/161 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   +  +G V + D    +  +   + P     S    ++HG+T  
Sbjct: 4   FAAIDFETA--NEQRTSVCSVGVVIVRDGEIVDN-YYSLIRPEPEYYSYWNTRVHGLTLA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              + P F  ++ E       +    +AHN  FD   + A  +    D  D      TLS
Sbjct: 61  DTAEAPVFPVVWQEIAPLI--EGLPLVAHNKGFDESCLKAVFKTYCLDYPD-YEFHCTLS 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            ARR+        L+++    G  +     H AL D+   +
Sbjct: 118 TARRRIKGLPSYQLHTVAAYVGYELEQH--HHALADAEACA 156


>gi|153870628|ref|ZP_01999989.1| ribonuclease T [Beggiatoa sp. PS]
 gi|152072905|gb|EDN70010.1| ribonuclease T [Beggiatoa sp. PS]
          Length = 212

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 16/194 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G + + D ++EI AV L    +     ++T    + P  G     
Sbjct: 12  RFRGFLPVVVDVETAGFNPERDALLEIAAVILQINEEGLWQPHQTHFSHIVPFEGANLDK 71

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAE 109
           +AL+  G+          ++     ++F              A  + HN  FD+ FINA 
Sbjct: 72  QALEFIGVDPFHPFRFAKQEAEGLETVFKPIRKAVKIYGCTRAVLVGHNPSFDLSFINAA 131

Query: 110 LQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            +R   K P       DT ++A   +   +  L    +  G   +    H A+ D+   +
Sbjct: 132 SERTGVKSPFHRFSTFDTATLAGLVY--GQTVLARAVQAAGFEWNTSEAHAAIYDAQRTA 189

Query: 169 DVYIKMMVGGSQIN 182
           D++  ++    + N
Sbjct: 190 DLFCTIVNSWDKRN 203


>gi|184200503|ref|YP_001854710.1| DNA polymerase III subunit epsilon [Kocuria rhizophila DC2201]
 gi|183580733|dbj|BAG29204.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila
           DC2201]
          Length = 232

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 92/227 (40%), Gaps = 15/227 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++  +  FD+ETTG D +  RI+    V +       + ++    P G +   EA  +H
Sbjct: 7   WHQGPRACFDLETTGRDPQQARIVTASVVLVSPAGDVLQEWEWLADP-GVEIPEEAAAVH 65

Query: 64  GI-TDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           G+ TD    +    + + +E  +       +    +A NA +D+  +  E +R      +
Sbjct: 66  GVSTDRARAEGRPVAEVAAELSEVLAGFWREGVPVLAFNAAYDLTVLTRETERHGLPAPE 125

Query: 120 PSRIID--TLSIARRKHPSSRNDLNSLCKRYGITIS--HRSKHGALLD---SHLLSDVYI 172
           P  ++D   L+    ++   +  L +LC+ YG+ +   H S   AL     +  L+D + 
Sbjct: 126 PFPVLDPFVLNKQVHRYRRGKRTLGALCEEYGVVLDAAHTSAEDALATERLAAALADRFA 185

Query: 173 KM---MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           ++        +   G+   +    +E  +     +++    P+  R 
Sbjct: 186 ELRQPAAALHEAQIGWAAEQAASLQEYFRRKDPTAVVDGTWPVHPRP 232


>gi|303229201|ref|ZP_07316002.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-134-V-Col7a]
 gi|303230531|ref|ZP_07317286.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514814|gb|EFL56801.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302516214|gb|EFL58155.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 209

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 69/163 (42%), Gaps = 9/163 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +   +    +  + + +   T + +   + P      PE +++HGI  +
Sbjct: 4   FVALDFETA--NKYKNSACSLAVITVENGQITKKAYS-LIKPPFMSFDPECIEIHGIEPK 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  + +F  ++   ++  + +    IAHNAKFD+  + A L   N  P        T+ 
Sbjct: 61  EVLHEKTFDQLWPAIYE-NHLKGKIMIAHNAKFDMNVLRATLDYYNI-PWPELDYACTVK 118

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           I+R   P    + LN++    G+   H   H AL D+   + V
Sbjct: 119 ISRAVWPDLVNHKLNTMAAYLGVEFKH---HYALDDAETCAKV 158


>gi|307327637|ref|ZP_07606822.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
 gi|306886749|gb|EFN17750.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
          Length = 254

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 17/175 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R        FD+ETTG+D ++DRI+    V L    + +   + ++   G     EA  
Sbjct: 1   MRWPSGPMAAFDLETTGIDIESDRIVTAALVFLEPDGRVSDE-RTWMLDPGVVIPEEAAA 59

Query: 62  LHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           +HGI+ E      +   P+ + I +             +  NA++D+  ++ E +R    
Sbjct: 60  IHGISTEQARKHGVPAGPAVAEISTAVAQLLRV-GTPLVIMNARYDLSLLDRECRRHQVA 118

Query: 117 PLDP------SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           PL          +ID L + +   ++   R  L +LC  YG+ +   S H A  D
Sbjct: 119 PLSARQGARLHPVIDPLVLDKHADRYRKGRRTLQALCAHYGVPLD--SAHDARSD 171


>gi|312131463|ref|YP_003998803.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella
           byssophila DSM 17132]
 gi|311908009|gb|ADQ18450.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella
           byssophila DSM 17132]
          Length = 270

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 92/233 (39%), Gaps = 14/233 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K    + D+ETTG++   DRI+EI   +  +   T  T    + P       E   +HGI
Sbjct: 9   KKPLAIIDLETTGVNITRDRIVEICIAKA-NLDGTVETRTKKVNPTI-PIPLETSLIHGI 66

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRII 124
            DE + ++P+F  +      F   +  +    N  +FD+  +  E  R++ +  D  +  
Sbjct: 67  YDEDVANEPTFKQLARSLAQFL--EGCDLAGFNSNRFDIPMLVEEFLRVDSNLFDI-KNR 123

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
             + + R  H      L++  K Y    +  + H A  D+    +V    +       + 
Sbjct: 124 KLIDVQRIFHLMEPRTLSAAYKFY-CQKTLENAHSAEADTLATLEVLCAQVE-----RYE 177

Query: 185 FKTNEDRFFKEEKKTVPNISLLKR--DKPLFTRITKEELDEHDKTIQTLGKNA 235
             T +D    E +    +I  L +     L     +  LD++ + +   GKNA
Sbjct: 178 GVTIKDDKGVEYEPVKNDIDELHKLTSSTLVDFAQRMTLDKNGEVVFNFGKNA 230


>gi|148980340|ref|ZP_01816006.1| DNA polymerase III, epsilon subunit [Vibrionales bacterium SWAT-3]
 gi|145961282|gb|EDK26593.1| DNA polymerase III, epsilon subunit [Vibrionales bacterium SWAT-3]
          Length = 238

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 12/172 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            IV D+ETTGLDS+ D I+ +G V+++           ++L  + +  + E   ++ IT 
Sbjct: 51  YIVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAKHIYLNNDSQ-INAETAVINHITP 109

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L++  S       F++    +    +AH    +  FI+  L R       P   +DTL
Sbjct: 110 QMLEEGASIHDAMLTFFE--AAKGKIIVAHACVVEEKFISQYLLRCYGLRQLPLLWLDTL 167

Query: 128 SIARRKHPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            I +    +  N       L    +RYG+     + H AL D+   +++ + 
Sbjct: 168 CIEKSMEKAISNHEEVDLTLAGTRERYGLP--EYNSHNALADAVSTAELLLA 217


>gi|78484942|ref|YP_390867.1| ribonuclease T [Thiomicrospira crunogena XCL-2]
 gi|78363228|gb|ABB41193.1| RNAse T [Thiomicrospira crunogena XCL-2]
          Length = 207

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 17/188 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G D + + +IEI  V L   S    + ++T Q  + P  G +   
Sbjct: 10  RFRGFLPVVVDVETAGFDPQTNALIEIAIVTLKMNSDGTIERDQTVQANVLPFKGSQLDK 69

Query: 58  EALKLHGITDE------FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINA 108
            ALK  G+ D        + +K +    F+       E +      + HNA FD+ F+ A
Sbjct: 70  SALKFIGVEDPTHPFRMAVSEKDALEKCFAPIRQLLKETDCSRAILVGHNAFFDLSFVKA 129

Query: 109 ELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              R   K P       DT+S+A   +   +  L    +   I   +   H A  D+   
Sbjct: 130 AADRCKVKSPFHEFSTFDTVSLAGLAY--GQTVLAKAVQMAEIEWDNSKAHSAEYDTIKT 187

Query: 168 SDVYIKMM 175
           +D++ K++
Sbjct: 188 ADLFCKIV 195


>gi|86145828|ref|ZP_01064156.1| DNA polymerase III, epsilon chain [Vibrio sp. MED222]
 gi|85836283|gb|EAQ54413.1| DNA polymerase III, epsilon chain [Vibrio sp. MED222]
          Length = 238

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 12/172 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            IV D+ETTGLDS+ D I+ +G V+++           ++L  + +  + E   ++ IT 
Sbjct: 51  YIVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAKHIYLDNDSQ-INAETAVINHITP 109

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L++  S       F++    +    +AH    +  FI+  L R       P   +DTL
Sbjct: 110 QMLEEGASIHDAMLTFFE--AAKGKIIVAHACVVEEKFISQYLLRCYGLRQLPLLWLDTL 167

Query: 128 SIARRKHPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            I +    +  N       L     RYG+     + H AL D+   +++++ 
Sbjct: 168 CIEKSMEKAISNHEEVDLTLAGTRDRYGLP--EYNSHNALADAVSTAELFLA 217


>gi|296166805|ref|ZP_06849223.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897821|gb|EFG77409.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 330

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 89/247 (36%), Gaps = 32/247 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ET+G      R+I +  + L D  +  ++    L P      P    +HG+T  
Sbjct: 17  WAVIDVETSGFRPGQARVISLAVLGLDDDGRVEQSVVSLLNPG---VDPGPTHVHGLTAA 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D+P F+ +               +AHN  FD  F  A    + +  L    ++ T+ 
Sbjct: 74  MLEDQPQFADVVD--DVVKVLDGRTLVAHNVAFDYAF-LAAEAELAEAELPIDSVMCTVE 130

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +ARR      N  L +L   +G+       H A  D+ +L+ V    +    Q +     
Sbjct: 131 LARRLDLGIDNLRLETLAAHWGVP--QERPHDAFDDAMVLTGVLASALERARQRDIWLPV 188

Query: 188 ---------------NEDRFFKEEKKTVPNISLLK----RDKPLF----TRITKEELDEH 224
                          +E R  K     +P   L      R +PL       +  E    H
Sbjct: 189 HPVTRRRWPNGRVTHDELRPLKVLASRMPCPYLNPGHYVRGRPLVQGMRVALAAEVGRTH 248

Query: 225 DKTIQTL 231
           ++ ++ +
Sbjct: 249 EELVERI 255


>gi|87121437|ref|ZP_01077326.1| DNA polymerase III subunit epsilon [Marinomonas sp. MED121]
 gi|86163280|gb|EAQ64556.1| DNA polymerase III subunit epsilon [Marinomonas sp. MED121]
          Length = 242

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 79/190 (41%), Gaps = 22/190 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D+ETTGL S+ D I+ +G+V +        +   ++   G   S +++ +H +T   
Sbjct: 56  IALDLETTGLKSQKDTIVSVGSVAMNAKRIRCASSNYWVVNPGAPLSAQSITIHELTHSD 115

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS- 128
           ++  P  S  F    D    +    + H A  +  F+    +++    L    ++DTL+ 
Sbjct: 116 VEQAPPLSRYFEAILDALAGK--VVVVHCAAIERQFLYQAAKKLYGQDLF-FPVLDTLAL 172

Query: 129 ----------IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                     +AR    ++   L++  +RYG+       H AL D++  +++        
Sbjct: 173 EQKILKQRPLMARMFRGNTSVRLDACRQRYGLP--RYKAHHALTDAYASAELL------Q 224

Query: 179 SQINFGFKTN 188
           +QI      +
Sbjct: 225 AQIAHHLDAD 234


>gi|239832702|ref|ZP_04681031.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG
           3301]
 gi|239824969|gb|EEQ96537.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG
           3301]
          Length = 353

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 87/240 (36%), Gaps = 31/240 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    R    +  ++ GI
Sbjct: 95  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDICATFGALQQPSRPIPADITRITGI 154

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRII 124
           TDE ++ +    +I  E  D    +    IAHNA FD  F+    +   NK      + I
Sbjct: 155 TDEMVRGQ----TIPREKLDALIAEADIIIAHNAGFDRPFLERFSIAFANKPWACSVKEI 210

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV----------YIKM 174
           D      R    ++  L  L    G +    + H A  D   L  V          + ++
Sbjct: 211 D---WTARGFEGTK--LGYLI---GQSGYFHNGHRAEDDCQALLAVLKEQSGDTTPFAEL 262

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQT 230
           +    +           F  ++               R K  +T I +EELD   + ++T
Sbjct: 263 LKASQRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEIGEEELDAELEYLRT 322


>gi|84386996|ref|ZP_00990019.1| DNA polymerase III, epsilon chain [Vibrio splendidus 12B01]
 gi|84378071|gb|EAP94931.1| DNA polymerase III, epsilon chain [Vibrio splendidus 12B01]
          Length = 238

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 12/172 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            IV D+ETTGLDS+ D I+ +G V+++           ++L  + +  + E   ++ IT 
Sbjct: 51  YIVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAKHIYLDNDSQ-INAETAVINHITP 109

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L++  S       F++    +    +AH    +  FI+  L R       P   +DTL
Sbjct: 110 QMLEEGASIHDAMLTFFE--AAKGKIIVAHACMVEERFISQYLLRCYGLRAIPLLWLDTL 167

Query: 128 SIARRKHPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            I +    +  N       L    +RYG+     + H AL D+   +++++ 
Sbjct: 168 CIEKSMEKAISNHEEVDLTLAGTRERYGLP--EYNNHNALADAVSTAELFLA 217


>gi|315126562|ref|YP_004068565.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
 gi|315015076|gb|ADT68414.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
          Length = 233

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 80/193 (41%), Gaps = 24/193 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD+ +D I+ +G V         +  + ++    R  S E++ +HGIT  
Sbjct: 44  FVALDFETTGLDANSDDIVSVGLVPFNVNRIYCKESRHWVVQPRRDLSEESIVIHGITHS 103

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + + P  + I +   D    +    + H A  +  F    L  +         ++DT+ 
Sbjct: 104 EVDEAPDLNRILAPLLDAL--KGKVVVVHYAAIERHFFYNALL-MRIKEGIEFALVDTME 160

Query: 129 IARRKHPSS--------RNDLNSL-----CKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           I RR   +          + L SL      +RY + +     H AL D+   +++     
Sbjct: 161 IERRALKARQGLLGRLFNSKLGSLRLSDTRERYSLPLYQN--HNALTDALATAELL---- 214

Query: 176 VGGSQINFGFKTN 188
              +Q+++ ++++
Sbjct: 215 --QAQLSYHYRSD 225


>gi|213962149|ref|ZP_03390413.1| exonuclease [Capnocytophaga sputigena Capno]
 gi|213955155|gb|EEB66473.1| exonuclease [Capnocytophaga sputigena Capno]
          Length = 258

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 90/199 (45%), Gaps = 12/199 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K       FD+ETTG+D   DRI+EI  +++  + +K ++T+   + P        A
Sbjct: 1   MELKLSKPICFFDLETTGIDITKDRIVEISILKVYPNGNKESKTW--LVNPTI-PIPKAA 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
             +HGITDE +  +P+F  +  +  +    ++++   +N  +FD+  +  E+ R   D  
Sbjct: 58  SDVHGITDERVACEPTFKELAKQIHNMI--KDSDLAGYNSDRFDIPLLAEEMLRAEVDFD 115

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +R+  ++ +    H   +  L++  K Y G  +     H A  D++   ++    +  
Sbjct: 116 LGNRV--SVDVQTIFHKMEQRTLSAAYKFYCGKDLID--AHTASADTNATYEILKAQLDR 171

Query: 178 GSQINFGFKTNEDRFFKEE 196
              +    K   +  ++++
Sbjct: 172 YDSLENNIKKLSEFTYRKQ 190


>gi|157736764|ref|YP_001489447.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|315635941|ref|ZP_07891202.1| exonuclease [Arcobacter butzleri JV22]
 gi|157698618|gb|ABV66778.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|315479725|gb|EFU70397.1| exonuclease [Arcobacter butzleri JV22]
          Length = 203

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 13/173 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+ K D I+ IGAV + D     R TF +FL P+ +  + E++K+H +  
Sbjct: 31  YVSLDCETTGLNPKKDEILSIGAVLIKDNKILMRKTFNIFLKPS-KDINIESIKVHHLRQ 89

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L D         +  DF   +    + +  +FD+  I+   ++     L P+  I+  
Sbjct: 90  IDLNDALEPEIGIYQLLDFIGSR--PIVGYYIEFDMAIISKYTKKYLGIKL-PNTPIEVS 146

Query: 128 SIARRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           SI      S+ N        +++ K   I +  +  H AL D+ + S +++K+
Sbjct: 147 SIYYDSRKSTSNYGFIDLKFDTIMKNLNIPVLGK--HDALNDAIMTSMIFLKL 197


>gi|312960549|ref|ZP_07775055.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
 gi|311285075|gb|EFQ63650.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
          Length = 105

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/90 (45%), Positives = 55/90 (61%), Gaps = 2/90 (2%)

Query: 7  MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
          +R +V D ETTG+      RIIEIG VEL+    T R F V+L P+ R +   A+ +HGI
Sbjct: 3  IRSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPD-RDSDEGAIGVHGI 61

Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWI 95
          TDEFLK KP F+ +  EF++F N     +I
Sbjct: 62 TDEFLKGKPRFAEVADEFFEFINGAQLSFI 91


>gi|220915934|ref|YP_002491238.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953788|gb|ACL64172.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 207

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 16/177 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRK--NSPEALKLHGITD 67
             D+ET GLD + D I+ +G V +   S +   +F   + P        P ++  H +  
Sbjct: 21  ALDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFSTLIRPEAAAAAIDPGSILAHQLVP 80

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   PS  S+ ++  D    + A  + H A  DV F+    +R  +   +P  ++DT+
Sbjct: 81  HDVATAPSLDSVLADV-DLRAREGALLV-HQASLDVAFLKRAYRRCGRRWPEP-PVVDTV 137

Query: 128 S-----IARRKH-----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +       R++      PS   DLN L  R    +    +H AL D+   +++++ +
Sbjct: 138 ALLIKAAKRQRFVNPDAPSMEPDLNLLAARRQRGLPDYGQHDALTDAVATAELFLVL 194


>gi|183599959|ref|ZP_02961452.1| hypothetical protein PROSTU_03480 [Providencia stuartii ATCC 25827]
 gi|188022234|gb|EDU60274.1| hypothetical protein PROSTU_03480 [Providencia stuartii ATCC 25827]
          Length = 234

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 13/167 (7%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ETTGLD + DRI+ IG V + D     ++ Q +   +      E   ++ IT E L 
Sbjct: 55  IDLETTGLDPEKDRILSIGMVTIADSKILLKSAQHYYVNDNEPVKAETAVINHITPEQLS 114

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D  S     + F      +    +AH +  +  F++  L       L      DTL+I +
Sbjct: 115 DGVSLPHAIASFLH--EAKGKCILAHGSAIEHAFLSKALNIKELPLL----WFDTLNIEK 168

Query: 132 RKHPSSR-----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                         L++L  RY +       H AL D+   +++++ 
Sbjct: 169 TLLSHKNINRNDFSLSALRSRYQLP--DYDAHNALSDAIATAELFLA 213


>gi|288560027|ref|YP_003423513.1| exonuclease [Methanobrevibacter ruminantium M1]
 gi|288542737|gb|ADC46621.1| exonuclease [Methanobrevibacter ruminantium M1]
          Length = 261

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 15/174 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I FD ET+GL+    +IIE+G + + D       +   +   G +      ++ GIT+
Sbjct: 45  RIIFFDTETSGLNPNYCKIIELGMLVIEDGKII-EEYDKLIN-IGERIDSTITRITGITN 102

Query: 68  EFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP----LDPSR 122
           + L D   S   +  +  +         IA+N +FD+ F    L+R         ++  +
Sbjct: 103 DMLIDEGVSEGDVAQDLKEKL-ISGTLMIAYNCQFDLSFAYGLLKRHYPHEAEAIIEDVK 161

Query: 123 IID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +D  T+   R+ +P   +  +   + Y I   +   H A+ D+  L +V + +
Sbjct: 162 WLDPMTVFKDRKAYP---HKFSDAVEHYDIRNVN--FHRAIGDAKGLYEVCLSL 210


>gi|46402125|ref|YP_006619.1| Gp39 [Klebsiella phage phiKO2]
 gi|40218269|gb|AAR83055.1| Gp39 [Klebsiella phage phiKO2]
          Length = 202

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 32/188 (17%)

Query: 1   MIRKNKMR--KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M+  N +R   ++ D ETTGL    D IIEI  + +      N      + P+ R   PE
Sbjct: 11  MMMANWLRSDHVIIDTETTGL-MDFDEIIEITIINMRGEILLN----SLVKPS-RPIPPE 64

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDP 117
           A K++ IT+E + D P++S +F        +   +W+A N+ FD    + + L+    D 
Sbjct: 65  ATKINHITNEMVADAPTWSDVFPAVLKIIWK--YKWLAWNSSFDARLMVQSCLKTWFFDD 122

Query: 118 LDPS-----------RIIDTLSIARRKHPS--------SRNDLNSLCKRYGITISHRSKH 158
           L P            R ID  ++  + +           R  L +   R+G++ +    H
Sbjct: 123 LKPHRITSIIMAIETRHIDAKAVYDQWYGEFDEKRKNFKRQSLATAAARHGVSTAG--AH 180

Query: 159 GALLDSHL 166
            AL D  +
Sbjct: 181 RALADCLM 188


>gi|262341288|ref|YP_003284143.1| DNA polymerase III subunit epsilon [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272625|gb|ACY40533.1| DNA polymerase III subunit epsilon [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 256

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 82/193 (42%), Gaps = 12/193 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M  K       FDIE TG++   DRIIEI  +++  + ++ ++T+   +CP G    P++
Sbjct: 1   MKLKLHRPICFFDIEATGINIGKDRIIEISILKIFPNGNQEDKTW--LVCP-GIPIPPQS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP- 117
             +HGI +E ++ K  F  +    +     +N +   +N  +FD+  +  E+ R      
Sbjct: 58  TAIHGIKNEDVEGKLKFKDVAFSIFKMI--ENTDLAGYNSNRFDIPILAEEMLRAGISFD 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +   + ID   I  +  P     L++  K Y  +      H +  D+    ++ +  +  
Sbjct: 116 IKKHKTIDVQVIFHKMEP---RTLSAAYKYY-CSKELIKAHSSKEDAFATYEILLSQLEK 171

Query: 178 GSQINFGFKTNED 190
              +    K+   
Sbjct: 172 YENLKKDVKSLNQ 184


>gi|1794167|dbj|BAA11217.1| unnamed protein product [Vibrio parahaemolyticus]
          Length = 234

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 14/191 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTG + + DR+I IG VE+ +   + N    VF+  +      E++K+H I  E
Sbjct: 49  LVLDFETTGFNPEVDRVISIGWVEIRNSNIRLNSARHVFIN-HAIDICHESVKVHHIRPE 107

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L     S  + F++  D         +AH    +  F+   ++   ++   P   +DTL
Sbjct: 108 TLHVSGISEQAAFTQLLDVIA--GKILVAHGCIMEQRFLEQYIKMKYQNLKLPLIWLDTL 165

Query: 128 ---SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK---MMVGGSQ 180
                  +  P  S   L+S+ K   +       H AL D+   +++Y+     + G S 
Sbjct: 166 KIEQYRTQLRPTRSDWRLSSIRKELNLPTY--QAHNALNDAIATAELYLAQINCLFGLSS 223

Query: 181 INFGFKTNEDR 191
                  N  R
Sbjct: 224 APLHVLVNASR 234


>gi|319953453|ref|YP_004164720.1| DNA polymerase iii, alpha subunit [Cellulophaga algicola DSM 14237]
 gi|319422113|gb|ADV49222.1| DNA polymerase III, alpha subunit [Cellulophaga algicola DSM 14237]
          Length = 1479

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 85/251 (33%), Gaps = 33/251 (13%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R I+I      D           + P+G     +
Sbjct: 2   YLIFDTETTGLPKRWDVPFTDTDNWPRCIQIAWQLHDDMGNLIEHQDYLVQPDGFNIPYD 61

Query: 59  ALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
           A ++HGI+    + K    + +  +F +    +    +  N  FD+  + AE  R+  + 
Sbjct: 62  AEQIHGISTALAEQKGVPLAVVLEKFNEAM-AKTKFVVGQNVGFDLNIMGAEFHRMGVEN 120

Query: 117 PLDPSRIIDTLSIARRKH------PSSRNDLNSLCK--RYGITISHRSKHGALLDSHLLS 168
           PL    ++DT +               +  L +L +   Y   +     H A  D    +
Sbjct: 121 PLQELPVLDTCTEHTATLCQIPGGRGGKFKLPTLTELHHYLFGVGFGEAHNATADVEATT 180

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
             +++++              D F    +     I L+        + +K+  D      
Sbjct: 181 RCFLELVRKQQYTIEKLDVQPDYFKNFSEANPQEIQLIGLKHINLKKASKKIADA----- 235

Query: 229 QTLGKNAIWDR 239
                  +WD+
Sbjct: 236 -------LWDK 239


>gi|170739695|ref|YP_001768350.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
 gi|168193969|gb|ACA15916.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 222

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 8/171 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           R +  D+ETTGL ++ DR++  GAV      L            +   GR + P A  +H
Sbjct: 21  RLLAVDVETTGLGAE-DRVVSFGAVLLDTATLLGGSPVLACHHLIFDPGRPSHPRAEAVH 79

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G  D  L+ +                 +   +AHNA FD+GF+  E +   + P      
Sbjct: 80  GYDDWLLRHQDPARGHLDAVAALLAGADLV-VAHNAAFDLGFLAREFRAAGR-PDPARPT 137

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             T+   RR+     + L+++C+R  +  +  ++HGAL D+ L   VY+ +
Sbjct: 138 YCTMEAYRRRGEPGSSALDAVCRRVKLARAG-ARHGALEDAWLALRVYLWL 187


>gi|307328999|ref|ZP_07608167.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
 gi|306885361|gb|EFN16379.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
          Length = 240

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 17/186 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   I FD+ETTG D +  RI+    VE+ D     R    +L          A+ 
Sbjct: 1   MGWHRGLLIGFDLETTGTDPRTSRIVTAAVVEVRDGEPIGRR--EWLADPQVPIPDGAVA 58

Query: 62  LHGITDEFL----KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGIT+E      +         +E         A  +A+NA FD+  + AEL R    P
Sbjct: 59  VHGITNERAAAEGRSAREVVEEVAEVLVAHWRAGAPVVAYNAAFDLSLLAAELGRHGLRP 118

Query: 118 L-------DPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           L       +   ++D  T+  A  ++   +  L ++C  YG+   H   H A  D+    
Sbjct: 119 LSERLEGAETGPVVDPYTIDRAVDRYRKGKRTLEAVCGEYGVV--HDRAHDAGADALAAV 176

Query: 169 DVYIKM 174
            V   +
Sbjct: 177 RVACAL 182


>gi|149190662|ref|ZP_01868930.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
 gi|148835545|gb|EDL52514.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
          Length = 176

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 11/171 (6%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           D ETT LD     I+ I A +++D        F+V L    +    +++K+H IT + LK
Sbjct: 2   DCETTSLDPSVAEIVTIAATKIIDNRIITSDPFEVRLS-APKSLGEDSVKIHHITHDELK 60

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
              S     S   +F   +    + ++ ++D   ++   ++    PL    I  +     
Sbjct: 61  HGISEKQAMSALLNFIGNR--PLVGYHIRYDKKILDRAAKKHLGFPLPNELIEVSQIYND 118

Query: 132 RKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +      N      L ++C+   I   H+  H AL D+   + VY+K+  G
Sbjct: 119 KLLKLLPNGYFDLSLEAICRHLQIPNYHK--HDALEDAKAAAMVYLKLTRG 167


>gi|149278873|ref|ZP_01885008.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
 gi|149230492|gb|EDM35876.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
          Length = 1477

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 29/235 (12%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL         D     R I+I      ++ K        + P G     +
Sbjct: 2   YLIFDTETTGLPRNWNAPITDTDNWPRCIQIAWQLHDEFGKLVEHQDYLVKPEGFNIPYD 61

Query: 59  ALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
           A ++HGI+ E  +++  S + +  +F +  ++     +  N  FDV  +  E  R+  D 
Sbjct: 62  AERIHGISTELAEEQGISLAEVVEKFNEALSKAR-FVVGQNIGFDVNIMGCEFHRLGVDS 120

Query: 117 PLDPSRIIDTLSIA---RRKHPSSR---NDLNSLCK----RYGITISHRSKHGALLDSHL 166
           P+    ++DT +       K P  R     L +L +     +G+  +    H A  D   
Sbjct: 121 PMSSMPVLDTCTEVTAELLKLPGGRGGKFKLPNLTELHQYLFGVPFA--EAHNATADVEA 178

Query: 167 LSDVYIKM--MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +  ++++  M   S       TN  R F+E    V  I  +          + E
Sbjct: 179 TTRCFLQLIKMEVFSVEQLQCDTNYFRVFREHNPEV--IERIGLSHVNLKSASDE 231


>gi|92115957|ref|YP_575686.1| exonuclease [Nitrobacter hamburgensis X14]
 gi|91798851|gb|ABE61226.1| Exonuclease [Nitrobacter hamburgensis X14]
          Length = 334

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 14/170 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IV D+ET   ++    I +IG VE++     ++   + + P+          +HGIT +
Sbjct: 6   FIVLDVETA--NADYASICQIGLVEVVAGEVVSQE-AILVNPDDY-FDGFNTSIHGITAD 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P F  + +      +      I H+  FD   I+   +R   +  D  + +D   
Sbjct: 62  HVCGAPLFHEVHAALSQRLSGS---IIVHHGPFDRVSISRACERCGIESFDV-QWLDNQR 117

Query: 129 IARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           + RR           L SL   +GI   H   H AL D+   ++++ + +
Sbjct: 118 VVRRVWEQFSKSGYALKSLAAFFGIEFQH---HDALQDAIATNEIFRRAL 164


>gi|270261380|ref|ZP_06189653.1| exodeoxyribonuclease X [Serratia odorifera 4Rx13]
 gi|270044864|gb|EFA17955.1| exodeoxyribonuclease X [Serratia odorifera 4Rx13]
          Length = 222

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 33/232 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ET GLD     ++E+ +V+L+D           + P+ R  S +A+ +H IT++ +
Sbjct: 5   VIDTETCGLDGG---VVEVASVDLIDDH-IANPMSDLVSPD-RPISIDAMAIHHITEQMV 59

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           + KP  +     +       +  ++AHNA FD G +          P      I T+ +A
Sbjct: 60  EGKPRIAVAIGRYL-----GSPYYVAHNAAFDRGVL----------PEMRGAWICTMKLA 104

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS-----KHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           R  +P  +     L     + +          H AL D ++ + +  +++      + G+
Sbjct: 105 RTLYPDIKYGNQYLRYALNLEVQLPQDTTLYPHRALYDCYVTAALLQRIVK-----DSGW 159

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE---ELDEHDKTIQTLGKN 234
              +     E+   +      K       RI +E    L    K+I+ L  +
Sbjct: 160 TPEQMAQITEQPVLLKKFKFGKYRGQEIDRIAQEDPGYLRWMLKSIEDLSPD 211


>gi|149199563|ref|ZP_01876597.1| putative exonuclease [Lentisphaera araneosa HTCC2155]
 gi|149137359|gb|EDM25778.1| putative exonuclease [Lentisphaera araneosa HTCC2155]
          Length = 165

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 12/170 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET    +K +    +  + +      +  +   + P   + S   + +HGI 
Sbjct: 1   MDFVAIDFETA--TAKRNSACAVAIITVEKGVIVDE-YSELIQPPNNEYSWRNIDVHGIE 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRI 123
                 K  F  ++ E            +AHN  FD   +   ++  + D  D     R 
Sbjct: 58  PRHTMYKEDFEDLYPEIRKRL--TGKLVVAHNESFDRSVMTRSMEYYDLDYADLGVADRW 115

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + T+ + +         LN LC  +GI + H   H AL D+   +++Y +
Sbjct: 116 VCTVKLYKA-QGFKPAKLNILCDHFGIPLKH---HDALSDARACAELYKR 161


>gi|258512426|ref|YP_003185860.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479152|gb|ACV59471.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 218

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 70/180 (38%), Gaps = 12/180 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66
             V D+ET+G     D+I+ +       + S+ + +F   +   +         +L G+T
Sbjct: 30  YFVLDLETSGFSPARDKILSVACATFSGWSSEPDESFYAIVRHDDVADVPSHIWELTGLT 89

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---ELQRINKDPLDPSRI 123
            E ++D            +        W+AH+ + D+GF+      L R+   PL     
Sbjct: 90  PEAMRDGEPLEVALRRALEL--GAGRVWVAHHVRHDLGFLQRATDALWRLRLRPLAMDTA 147

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +    +AR   P     L+  C+  GI +  R  H A  D  + + V+ K M    ++  
Sbjct: 148 VVAQVLARAARPL---TLDEACEWLGIPVVGR--HRADADVRMTAAVWRKEMELCGRLGL 202


>gi|253572302|ref|ZP_04849705.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838077|gb|EES66165.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 188

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 69/180 (38%), Gaps = 13/180 (7%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           M +K   R       D ET   + K   +  +G V + +     + +   + P     + 
Sbjct: 1   MFQKTAKRMKDFAAIDFETA--NGKRTSVCSVGVVIVRNGKIVKKIY-RLIRPCPNYYTQ 57

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
               +HG+T    ++   F  +++E     +      +AHN+ FD G + A  +      
Sbjct: 58  WTTAVHGLTYADTEEAEDFPDVWAEIKPLID--GLPLVAHNSPFDEGCLKAVHELYEM-T 114

Query: 118 LDPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               +   T   +R+        + L+++  R G  +++   H AL D+   + + + ++
Sbjct: 115 YPNYKFYCTCRTSRKVFGKELPNHQLHTVAARCGYDLTNH--HHALADAEACAQIALLII 172


>gi|256831880|ref|YP_003160607.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans
           DSM 20603]
 gi|256685411|gb|ACV08304.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans
           DSM 20603]
          Length = 238

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 19/201 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+D+ +DR++    V       T  T+   + P G     EA ++HGIT E+  
Sbjct: 11  FDTETTGVDTAHDRVVTAALVLRTGEVTTVDTW--LIDP-GVPIPDEAARIHGITTEYAV 67

Query: 72  DK-----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL------DP 120
           +       + S I     D  + Q    +A NA FDV  + AEL R     L        
Sbjct: 68  EHGANPVDALSVIADRIVDHMS-QGWALVAFNATFDVCIVEAELARHGLPTLAQRLGGPV 126

Query: 121 SRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           + +ID L + R   ++   +  L +LC  YG+     + H A  D     DV  +M+ G 
Sbjct: 127 APVIDPLVLDRAVDRYRRGQRKLANLCSEYGVE-DTGTLHTADADVVATLDVLERMV-GR 184

Query: 179 SQINFGFKTNEDRFFKEEKKT 199
                    +E   F+ +  T
Sbjct: 185 HPRLAAMTLDELHAFQAQAHT 205


>gi|300727261|ref|ZP_07060677.1| exonuclease [Prevotella bryantii B14]
 gi|299775499|gb|EFI72093.1| exonuclease [Prevotella bryantii B14]
          Length = 163

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 70/168 (41%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +++   +  +G V + +    + +F   + P     +    ++HG+  E
Sbjct: 4   FVSIDFETA--NNERSSVCSVGIVIVRNGEIVD-SFYSLIQPEPNYYNYWCSQVHGLCHE 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              D P F  ++++       +N   +AHN  FD G + A   R+ +         DTL 
Sbjct: 61  DTDDAPVFPKVWAQIEPLI--ENLPLVAHNKPFDEGCLKAVF-RVYQMDYPDYEFYDTLC 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++RR  P    + L ++    G  +     H AL D+   + +  +++
Sbjct: 118 VSRRVLPDLENHQLQTVAAACGYCLEDH--HHALADAEACAWIAREIL 163


>gi|237715092|ref|ZP_04545573.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408959|ref|ZP_06085504.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643917|ref|ZP_06721705.1| exonuclease [Bacteroides ovatus SD CC 2a]
 gi|294809982|ref|ZP_06768656.1| exonuclease [Bacteroides xylanisolvens SD CC 1b]
 gi|298481822|ref|ZP_07000012.1| exonuclease [Bacteroides sp. D22]
 gi|229444925|gb|EEO50716.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353170|gb|EEZ02265.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640767|gb|EFF58997.1| exonuclease [Bacteroides ovatus SD CC 2a]
 gi|294442828|gb|EFG11621.1| exonuclease [Bacteroides xylanisolvens SD CC 1b]
 gi|295087790|emb|CBK69313.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Bacteroides xylanisolvens XB1A]
 gi|298272044|gb|EFI13615.1| exonuclease [Bacteroides sp. D22]
          Length = 198

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 69/172 (40%), Gaps = 11/172 (6%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR     D ET   + K   +  +G V + D    N+ +   + P     +     +HG+
Sbjct: 1   MRNFAAIDFETA--NGKRTSVCSVGVVIVKDGKIVNKIY-RLIRPAPNYYTQWTTAIHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T +   +   F  +++E     +      +AHN+ FD G + A  +  +       +   
Sbjct: 58  TYDDTMEAEDFPDVWAEIKPLID--GLPLVAHNSPFDEGCLRAVHELYDM-TYPNYKFYC 114

Query: 126 TLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T   +R+        + L+++ +R G  + +   H AL D+   + + + ++
Sbjct: 115 TCRTSRKVFGKDLPNHQLHTVAERCGYNLENH--HHALADAEACAQIALLII 164


>gi|7272366|gb|AAA27192.2| polymerase III epsilon (editing) subunit [Salmonella enterica
          subsp. enterica serovar Typhimurium]
          Length = 132

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 58/96 (60%), Gaps = 8/96 (8%)

Query: 8  RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
          R+IV D ETTG++      +  +IIEIGAVE+++   T   F V+L P+ R   PEA  +
Sbjct: 7  RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65

Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98
          HGI DEFL DKP F+ +  EF D+     AE + HN
Sbjct: 66 HGIADEFLLDKPVFADVVDEFLDY--XXGAELVIHN 99


>gi|317048373|ref|YP_004116021.1| DNA polymerase III subunit epsilon [Pantoea sp. At-9b]
 gi|316949990|gb|ADU69465.1| DNA polymerase III, epsilon subunit [Pantoea sp. At-9b]
          Length = 222

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 24/168 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D ETT        I E+ +V++++    N     F+ P     +  A+ +H IT++ +
Sbjct: 7   VIDTETTSF---EGGICELASVDIVEGKICN-PMSDFVKPP-EPITVGAMAIHHITNDMV 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P    +      +       ++AHNA FD   +          P   +  I TL +A
Sbjct: 62  TDAPPIGDVIDR---YLGAD--VYVAHNAAFDRPKL----------PQITAPWICTLKLA 106

Query: 131 RRKHPS-SRNDLNSLCKRYGITIS---HRSKHGALLDSHLLSDVYIKM 174
           R+ +P    +    L   + + +        H AL D ++ + + I++
Sbjct: 107 RKLYPELESHTNQYLRYHFMLDVDVPEGLHAHRALYDCYVTAALLIRL 154


>gi|283769033|ref|ZP_06341939.1| exonuclease [Bulleidia extructa W1219]
 gi|283104390|gb|EFC05767.1| exonuclease [Bulleidia extructa W1219]
          Length = 186

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 12/172 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLHGI 65
           R +  D+ET   D ++   I +  +E          F   + P    N  E    K+HGI
Sbjct: 3   RVVAVDVETASSDHRSMCAIGLSVLE---NGVLEEAFYSLIKPAANANHFEYFNTKVHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             + ++D P+   ++         ++   +AHNA FDV  I          P+      D
Sbjct: 60  HPKDVQDAPTLPEVYPTIKSLL--ESGIVVAHNAVFDVSVIKNCCLNTG-CPVPKVTYFD 116

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++ ++RR  P    + L+++ +   I + H   H A  D++    +    M 
Sbjct: 117 SVPLSRRAFPLLVNHKLDTVARYLKIPLDH---HHAGSDAYACLAIVAAAMA 165


>gi|255015922|ref|ZP_05288048.1| putative DNA polymerase III epsilon chain [Bacteroides sp. 2_1_7]
          Length = 181

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R    D ET   + K   I  IG   L D    +  +   + P     +     +HG++ 
Sbjct: 3   RFAAIDFETA--NGKRSSICSIGIAILEDDWVVDSIY-TLVRPTPNFYTRWTTAIHGLSA 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E   D   F   +         ++   +AHN+ FD G + A  +  +           T 
Sbjct: 60  EDTNDALCFEEAWESIAP--KLKDLPLVAHNSPFDEGCLKAAHEVYDL-AYPKYPFYCTC 116

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            ++R+ +P    + L ++    G  ++    H A+ D++  + + + MM 
Sbjct: 117 RLSRKMYPFLVNHQLQTVAAHCGYDLTQH--HNAMADAYACAHIALTMMR 164


>gi|262384204|ref|ZP_06077340.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301311117|ref|ZP_07217046.1| exonuclease [Bacteroides sp. 20_3]
 gi|262295102|gb|EEY83034.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300831180|gb|EFK61821.1| exonuclease [Bacteroides sp. 20_3]
          Length = 181

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R    D ET   + K   I  IG   L D    +  +   + P     +     +HG+T 
Sbjct: 3   RFAAIDFETA--NGKRSSICSIGIAILEDDWVVDSIY-TLVRPTPNFYTRWTTAIHGLTA 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E   D   F   +         ++   +AHN+ FD G + A  +  +           T 
Sbjct: 60  EDTNDALCFEEAWESIAP--KLKDLPLVAHNSPFDEGCLKAAHEVYDL-AYPKYPFYCTC 116

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            ++R+ +P    + L ++    G  ++    H A+ D++  + + + MM 
Sbjct: 117 RLSRKMYPFLVNHQLQTVAAHCGYDLT--RHHNAMADAYACAHIALTMMR 164


>gi|319944252|ref|ZP_08018528.1| exonuclease [Lautropia mirabilis ATCC 51599]
 gi|319742547|gb|EFV94958.1| exonuclease [Lautropia mirabilis ATCC 51599]
          Length = 230

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 13/176 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+ + D II IGA  ++     T    ++ + P  R+ SP+++ +H +  
Sbjct: 47  WVALDCETTGLNVRQDEIIAIGATRIVGRRLMTRERLELLVRPE-REVSPDSVAVHRLRA 105

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + D             F   +    + +  +FDV  I+  L+R     L   +I  + 
Sbjct: 106 QDVADGLPLCEAMERLLMFIGSR--PLVGYYLEFDVAMIDRALKRCFGLTLPQRKIEVSA 163

Query: 128 SIA----RRKHPSSRNDLNSLCKRYG-----ITISHRSKHGALLDSHLLSDVYIKM 174
                  R+  P  ++D   +  R+      + +  R  H AL D+ + +  +I++
Sbjct: 164 MYYDWRFRQLPPYQQHDNADIDLRFATILQTLDLPMRDAHDALNDAVMAALAFIRL 219


>gi|301162194|emb|CBW21739.1| putative exonuclease [Bacteroides fragilis 638R]
          Length = 175

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 14/178 (7%)

Query: 9   KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
               D ET TG     +    +G V + D   T+  +   + P   +     + +HGIT 
Sbjct: 5   FAAIDFETATG---YMESACAVGIVTVTDGEITDE-YYSLIQPPENEYWRANMLVHGITP 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRII 124
              +  P F +I+ E       Q    +AHN +FD   +   ++    D  +   P R  
Sbjct: 61  GMTESLPGFHAIYPEVKKRL--QGKVVVAHNEQFDRNVLKNTMRMYGLDYDELSLPERWE 118

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            T  I R        +L++ C+R GI + H   H AL D+   + +Y+  +     ++
Sbjct: 119 CTCRIYRSLG-YKPVNLSACCEREGIELKH---HEALSDARGCAKLYLNFLEKYRPLS 172


>gi|51849608|dbj|BAD42331.1| DNA helicase RecG [Nannochloris bacillaris]
          Length = 1341

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 76/184 (41%), Gaps = 21/184 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67
            IVFD+ETTGL  + D  +EI A    +   + RTF   +   +G   S +A ++ GIT 
Sbjct: 136 PIVFDLETTGLSKEKDHPVEIAA----EAPLSGRTFSTLIRLADGMSISTKAEEVTGITT 191

Query: 68  EFLKDK--PSFSSIFSEFWDFFNEQN--------AEWIAHN-AKFDVGFINAELQRINKD 116
              KD   P+F   ++ F  F   +            + HN  +FD+  +    +R +  
Sbjct: 192 AQCKDPSLPTFPQAYASFLRFIEAEMEDAAPGAFPLLVGHNIERFDLPLLLHCAKRFDVA 251

Query: 117 PLDPSRIIDTLSIARRKHPSS----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               +RI+DTLS +R     S      +L +L           + H A  D  +   V  
Sbjct: 252 APLSARILDTLSASRSLLTGSAKPEAFNLTTLYGHL-TRKEAIAAHRASADVKMTVAVLH 310

Query: 173 KMMV 176
            ++ 
Sbjct: 311 ALLE 314


>gi|322489448|emb|CBZ24706.1| mitochondrial DNA polymerase I protein B,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 1429

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 71/203 (34%), Gaps = 35/203 (17%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +    R + FDIETTGL+   D I+E+   + ++ +    TF   + P  R  +P  + +
Sbjct: 758 KLKTYRIVFFDIETTGLNPSTDAIVEVAMFDPIENT----TFHTLVNPQ-RSITPRTVGI 812

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNA--------EWIAHN-AKFDVGFINAELQRI 113
           H IT+  ++D P+   +      +     A          + HN    D   +   L+  
Sbjct: 813 HHITNAMVRDAPTVDVVAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPMLRRALECH 872

Query: 114 NKD-PLDPSRIIDTLS---------IARRKHPSSRNDLNS----------LCKRYGITIS 153
             +  LD     D+L+           R +   +   L            L     +   
Sbjct: 873 APECQLDGILFCDSLALLNAHRSDLRWRMRIRRANQPLMDALASSLSLSRLITALNVRPE 932

Query: 154 HRSKHGALLDSHLLSDVYIKMMV 176
               H A  D+  L  V + ++ 
Sbjct: 933 G-DLHRADTDTKALWYVLVNILG 954


>gi|311696841|gb|ADP99714.1| exonuclease, RNase T and DNA polymerase III [marine bacterium HP15]
          Length = 242

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 74/190 (38%), Gaps = 21/190 (11%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
              +++  +  D ETTGLD+    I+ IG V   LD  +  +     + P        ++
Sbjct: 45  TPLSEVPFVALDFETTGLDANQHSIVSIGLVPFTLDGIQLGKARHWIVRPK-LPLHQTSI 103

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGIT   +   P  + I  + +   N +    + H    +  F +  LQ    + +  
Sbjct: 104 TIHGITHSDIDQAPDLNDILKDLFACLNGR--IPVVHYRNIERSFFDVALQWRLGEGI-R 160

Query: 121 SRIIDTLSIARRKHPSSRND--------------LNSLCKRYGITISHRSKHGALLDSHL 166
             +IDT++I    HP                   L     RYG+   H + H AL+D+  
Sbjct: 161 FPLIDTMAIEAHLHPDRNPSRWQQLLGKKPVSIRLADSRLRYGLP--HYAAHNALIDAVA 218

Query: 167 LSDVYIKMMV 176
            +++    ++
Sbjct: 219 TAELLQAQVL 228


>gi|227497246|ref|ZP_03927486.1| DNA polymerase III subunit epsilon [Actinomyces urogenitalis DSM
           15434]
 gi|226833294|gb|EEH65677.1| DNA polymerase III subunit epsilon [Actinomyces urogenitalis DSM
           15434]
          Length = 249

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 69/195 (35%), Gaps = 18/195 (9%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN---RTFQVFLCPNGRKNSPEAL 60
                 + FD ETTG+D   DR++    V            +    +L   G    P A 
Sbjct: 12  WTDGPFLGFDTETTGVDPSQDRLVTAALVMRGPRHGEGTRRQEVVTWLADPGVPIPPGAS 71

Query: 61  KLHGITDE--FLKDKPS---FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114
            +HGI+ E    + +P+      +               +A NA FD+  +  EL R   
Sbjct: 72  AVHGISTERAQAEGRPAPQVLEEVAQRLAQAMGA-GTPVVAFNASFDLTLMEHELARHGL 130

Query: 115 -------KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                    PL P      L  A  +    +  L+++C+ YG+ +   + H A +D    
Sbjct: 131 ATLRERLGGPLAPVLDPLVLDRAVDRFRKGKRRLDAMCQVYGVQVD-EALHTAEVDVAAT 189

Query: 168 SDVYIKMMVGGSQIN 182
            DV   +     ++ 
Sbjct: 190 LDVLEALAHAYPELA 204


>gi|260881524|ref|ZP_05404631.2| exonuclease [Mitsuokella multacida DSM 20544]
 gi|260848674|gb|EEX68681.1| exonuclease [Mitsuokella multacida DSM 20544]
          Length = 196

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 12/166 (7%)

Query: 7   MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M     D ET TG     D    +  V +   +  + ++   + P   + S    K+HG+
Sbjct: 2   MNFTAIDFETATG---ARDSACSVAVVTIRAGALVD-SYYTLIQPPANRYSYFNTKIHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+    +   F+ I+ E       +    +AHNAKFD+  + + L R            D
Sbjct: 58  TEADTANAADFAGIWPELEA--KLEGQLVVAHNAKFDMSVLRSCLARYGLQA-PAFSYCD 114

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           T++IARR  P+ + + L ++     +   H   H AL D+   + +
Sbjct: 115 TVAIARRAWPNLANHKLGTVGAYLNLHFRH---HDALEDAKACAAI 157


>gi|153829717|ref|ZP_01982384.1| Gp39 [Vibrio cholerae 623-39]
 gi|148874796|gb|EDL72931.1| Gp39 [Vibrio cholerae 623-39]
          Length = 192

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 27/177 (15%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ETTGLDSK+ +I+E+ A+           +   + P G     EA ++HGIT+  +
Sbjct: 11  ILDTETTGLDSKS-QIVEVTAICAKSGELI---YSSLVRPQGF-IPAEATRIHGITNSDV 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---------------INK 115
            D P+F  I          +N   I +NA FD        +R               +  
Sbjct: 66  ADAPTFLDIIYPLS--LALRNRTGIIYNADFDSRMFIQSYERNLQISHLDLRSAYFALKH 123

Query: 116 DPLDPSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLL 167
             L+    ++  +    +  ++        L + C++ GI IS  + H AL D  + 
Sbjct: 124 KLLNSQCAMNWYAQFWGEFDTTNGGYRWQRLTNACQQQGIDISDLTAHRALADCEMT 180


>gi|302346278|ref|YP_003814576.1| exonuclease [Prevotella melaninogenica ATCC 25845]
 gi|302150299|gb|ADK96560.1| exonuclease [Prevotella melaninogenica ATCC 25845]
          Length = 163

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   +  +G V +    +   +F   + P          ++HG+T  
Sbjct: 4   FAAIDFETA--NFERCSVCSVGVVIVR-GGEIVDSFYSLIQPEPNYYHWRCTQVHGLTCA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P F  ++ +       +    +AHNA FD   + A       D  D    +DTL 
Sbjct: 61  DTDGAPVFCEVWKQIEPMI--EGLPLVAHNASFDKSCLKASFYTYQMDYPD-YEFLDTLK 117

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ARR  P    + L ++    G  ++    H AL D+   + +  +++
Sbjct: 118 AARRHFPHLPDHQLQTVSSACGYELTDH--HHALADAEACAWIAREIL 163


>gi|323143315|ref|ZP_08078006.1| ribonuclease T [Succinatimonas hippei YIT 12066]
 gi|322416932|gb|EFY07575.1| ribonuclease T [Succinatimonas hippei YIT 12066]
          Length = 251

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 22/190 (11%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           K++ R    +V D+ET G + + D ++E+  + +      Y + +      + P      
Sbjct: 24  KDRFRGFYPVVVDVETAGFNPETDALLEVAMMTMTMDDNGYLQPDEIMSANIRPFPNSNI 83

Query: 56  SPEALKLHGIT---------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
            P  +   GI          DE +   P F +I  +         A  + HN  FD+ FI
Sbjct: 84  EPSNIAFLGIDPFDESRNLQDERVAVLPMFKAISKKMKKE-GCTRAILVGHNGFFDLSFI 142

Query: 107 NAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +A  +R+N    P     + DT S+A   +   +  L   C   GI       HGA  D+
Sbjct: 143 HALAKRLNYKRCPFHQFTVFDTASLAGLVY--GQTVLARACTAAGIEFEDDKAHGAKYDT 200

Query: 165 HLLSDVYIKM 174
            +   ++  +
Sbjct: 201 LMECKLFCSI 210


>gi|318057465|ref|ZP_07976188.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318076919|ref|ZP_07984251.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
          Length = 244

 Score =  107 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 83/223 (37%), Gaps = 16/223 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +  R   FD+ETTG+D + DRI+    V+      T     V+L   G +    A 
Sbjct: 1   MTAWHTGRLCGFDLETTGIDVEADRIVTACVVQCGGGQDTASA--VWLADPGVEIPEGAA 58

Query: 61  KLHGITDEFLK-DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKD 116
           K+HGIT E  + +      +  +      +        +A NA +D+  ++ E +R    
Sbjct: 59  KVHGITTEQARAEGRPAPEVVEQVVAALAQVARDGVPVVAMNASYDLTLLDREARRHGVQ 118

Query: 117 PL-----DPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           PL     D  R+ID   L     K       L  LC+ Y + +     H A  D+     
Sbjct: 119 PLVDIVGDQLRVIDPRVLDKRVDKFRRGGRKLEDLCRTYSVGLDG--AHSADADAIAACR 176

Query: 170 VYIKMMVGGSQINFG-FKTNEDRFFKEEKKTVPNISLLKRDKP 211
           V  ++    + I         ++     ++    ++   R  P
Sbjct: 177 VAWRIATTHTAIGAASLGELHEQQVGWAREQAEGLAAYFRRTP 219


>gi|253563502|ref|ZP_04840959.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5]
 gi|251947278|gb|EES87560.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5]
          Length = 175

 Score =  107 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 14/178 (7%)

Query: 9   KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
               D ET TG     +    +G V + D   T+  +   + P   +     + +HGIT 
Sbjct: 5   FAAIDFETATG---YMESACAVGIVTVTDGEITDE-YYSLIQPPENEYWRANMLVHGITP 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRII 124
              +  P F +I+ E       Q    +AHN +FD   +   ++    D  +   P R  
Sbjct: 61  GMTESLPGFHAIYPEVKKRL--QGNVVVAHNEQFDRNVLKNSMRMYGLDYDELSLPERWE 118

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            T  I R        +L++ C+R GI + H   H AL D+   + +Y+  +     ++
Sbjct: 119 CTCRIYRSLG-YKPVNLSACCEREGIELKH---HEALSDARGCAKLYLNFLEKYRPLS 172


>gi|150009317|ref|YP_001304060.1| putative DNA polymerase III subunit epsilon [Parabacteroides
           distasonis ATCC 8503]
 gi|256841885|ref|ZP_05547391.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|149937741|gb|ABR44438.1| putative DNA polymerase III epsilon chain [Parabacteroides
           distasonis ATCC 8503]
 gi|256736779|gb|EEU50107.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 181

 Score =  107 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R    D ET   + K   I  IG   L D    +  +   + P     +     +HG+T 
Sbjct: 3   RFAAIDFETA--NGKRSSICSIGIAILEDDWVVDSIY-TLVRPTPNFYTRWTTAIHGLTA 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E   D   F   +         ++   +AHN+ FD G + A  +  +           T 
Sbjct: 60  EDTNDALCFEEAWESIAP--KLKDLPLVAHNSPFDEGCLKAAHEVYDL-AYPKYSFYCTC 116

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            ++R+ +P    + L ++    G  ++    H A+ D++  + + + MM 
Sbjct: 117 RLSRKMYPFLVNHQLQTVAAHCGYDLT--RHHNAMADAYACAHIALTMMR 164


>gi|257791384|ref|YP_003181990.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM
           2243]
 gi|257475281|gb|ACV55601.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM
           2243]
          Length = 367

 Score =  107 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 9/173 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M    FD+ET   + +NDRI  IGAV               + P    +    +++HGI 
Sbjct: 1   MLYTFFDVETP--NRRNDRICSIGAVVTDQDGTVVEKKSYLVNPESSFDD-INVRIHGIA 57

Query: 67  DEFLKDKPSFSSIF-SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
              +++  +F  ++      FF       +AHNA+FD+  +   L   +  P        
Sbjct: 58  PVDVRNAKTFPELWYDSLSAFFPVDG--VVAHNARFDLSVLTKTLVSYDI-PSPKMSYAC 114

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           TL ++++        L  +C+  GI +     H A  D+     V+  ++   
Sbjct: 115 TLDMSKKIDFIGGGKLPHVCEALGIELE--RHHQAESDATACMRVFWTLVGMA 165


>gi|325286607|ref|YP_004262397.1| DNA polymerase III subunit alpha [Cellulophaga lytica DSM 7489]
 gi|324322061|gb|ADY29526.1| DNA polymerase III, alpha subunit [Cellulophaga lytica DSM 7489]
          Length = 1479

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 94/258 (36%), Gaps = 37/258 (14%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R I+I      D           + P+G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPYTDTDNWPRCIQIAWQLHDDMGNVIEHQDYLVKPDGFNIPYD 61

Query: 59  ALKLHGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
           A K+HGI+    + D    + +  +F     E+    +  N  FD+  + AE  R+  + 
Sbjct: 62  AEKIHGISTALAEQDGVPLAEVLEKFNTAL-EKTKFVVGQNVGFDLNIMGAEFHRLQVEN 120

Query: 117 PLDPSRIIDTLSIARRKH------PSSRNDLNSLCKRYGITISH--RSKHGALLDSHLLS 168
            L    ++DT +               +  L +L + +           H A  D    +
Sbjct: 121 QLQELPVLDTCTEHTASLCQIPGGRGGKFKLPTLTELHQFLFGEPFGEAHNATADVEATT 180

Query: 169 DVYIKMMVGGS--------QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR----- 215
             +++++            Q ++    +E      E   + +I+L K  K +        
Sbjct: 181 RCFLELIRKQQYTAEQLDVQPDYFKNFSEANPKPIELIGLKHINLKKASKKIADALWAKD 240

Query: 216 ---ITKEELDEHDKTIQT 230
              ++KEE+ E+  T+++
Sbjct: 241 TGGVSKEEIKENLATLES 258


>gi|53712466|ref|YP_098458.1| DNA polymerase III subunit epsilon [Bacteroides fragilis YCH46]
 gi|60680667|ref|YP_210811.1| putative exonuclease [Bacteroides fragilis NCTC 9343]
 gi|265762628|ref|ZP_06091196.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
 gi|52215331|dbj|BAD47924.1| probable DNA polymerase III epsilon chain [Bacteroides fragilis
           YCH46]
 gi|60492101|emb|CAH06864.1| putative exonuclease [Bacteroides fragilis NCTC 9343]
 gi|263255236|gb|EEZ26582.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
          Length = 175

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 14/178 (7%)

Query: 9   KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
               D ET TG     +    +G V + D   T+  +   + P   +     + +HGIT 
Sbjct: 5   FAAIDFETATG---YMESACAVGIVTVTDGEITDE-YYSLIQPPENEYWRANMLVHGITP 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRII 124
              +  P F +I+ E       Q    +AHN +FD   +   ++    D  +   P R  
Sbjct: 61  GMTESLPGFHAIYPEVKKRL--QGNVVVAHNEQFDRNVLKNTMRMYGLDYDELSLPERWE 118

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            T  I R        +L++ C+R GI + H   H AL D+   + +Y+  +     ++
Sbjct: 119 CTCRIYRSLG-YKPVNLSACCEREGIELKH---HEALSDARGCAKLYLNFLEKYRPLS 172


>gi|153834926|ref|ZP_01987593.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
 gi|156972536|ref|YP_001443443.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116]
 gi|148868652|gb|EDL67736.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
 gi|156524130|gb|ABU69216.1| hypothetical protein VIBHAR_00168 [Vibrio harveyi ATCC BAA-1116]
          Length = 210

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 72/179 (40%), Gaps = 11/179 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLH 63
            K   +  D ETT LD     ++ I A +++D      + F+V L    +     ++K+H
Sbjct: 26  QKGEFVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLR-APQSLDSGSVKIH 84

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I  + L D  S      +  DF   +    + ++ ++D   ++    R    PL    I
Sbjct: 85  HIRHQDLVDGISEKEALIKLLDFIGNR--PLVGYHIRYDKKILDLACLRHLGFPLPNPLI 142

Query: 124 IDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +     +      N      L+++CK   + I  +  H AL D+   + VY+++  G
Sbjct: 143 EVSQVYHDKLERHLPNAYFDLSLDAICKHLELPIQDK--HDALQDAKSAALVYVRLTKG 199


>gi|85706653|ref|ZP_01037745.1| probable DNA polymerase III (epsilon chain) protein [Roseovarius
           sp. 217]
 gi|85668711|gb|EAQ23580.1| probable DNA polymerase III (epsilon chain) protein [Roseovarius
           sp. 217]
          Length = 193

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 17/173 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+E  G  +    IIE+G VE+     T R       P   + +P   ++HGIT+E +
Sbjct: 6   AVDVE--GNGATPPEIIELGIVEMDGLRLTGRIKHWQFRPE-LEITPIVSRIHGITNEDV 62

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D P F  +  +   +   + A  + HN + ++  ++  L         P+   DTL +A
Sbjct: 63  ADAPPFDDVVDDILLWL--EGAPIVGHNVRVELEALSKVL-----PGWKPAAAYDTLKVA 115

Query: 131 RRKHP-SSRNDLNSLCKRYGIT------ISHRSKHGALLDSHLLSDVYIKMMV 176
           RR  P   +  L  L    G+       +   + H A  D+ + + +  +++ 
Sbjct: 116 RRLLPYQEKFGLERLGDALGLKDAASKAVGGGAAHSAPYDAAMSAILLERLLT 168


>gi|262365379|gb|ACY61936.1| DNA polymerase III, epsilon chain [Yersinia pestis D182038]
          Length = 122

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 6/120 (5%)

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           +ARR  P  RN+L++LC RY I  + R+ HGALLD+ +L++VY+ M  G + + F  +  
Sbjct: 1   MARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLTFSME-- 58

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIWDRYISSNQ 245
            +       + +  I+            T++EL  H+  +      G + +W   + + +
Sbjct: 59  GEVSQNNASEDIQRITR-PASALKIIYATEDELANHESRLDFVMKKGGSCLWRMPLEAEE 117


>gi|325279480|ref|YP_004252022.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
 gi|324311289|gb|ADY31842.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
          Length = 190

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 22/185 (11%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            + FD ETTGL  + +          R++++  +   D      +  V + P G    PE
Sbjct: 2   YLFFDTETTGLPKRWNAPVTDLENWPRLVQLAWIMYDDRGNMLESRDVIVKPEGFTIPPE 61

Query: 59  ALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
           A ++HGIT    ++K      +  +F    +E  A  + HN  FD   + AE +R+    
Sbjct: 62  ASRVHGITTLVAREKGEPLQEVMEQFARKIDEATA-LVGHNISFDECIVGAEFERLRMMT 120

Query: 117 --PLDPSRIIDTLSIARRKHPSSRN----DLNSLCK-RYGITISHRSKHGALLDSHLLSD 169
              L P      LS    K P  +      L  L +  +G    +   H AL D    + 
Sbjct: 121 TLFLKPKYCTMKLSTDYCKLPGKKGFKSPRLAELHQVLFGSGFDN--AHNALADVEATAR 178

Query: 170 VYIKM 174
            + ++
Sbjct: 179 CFWEL 183


>gi|306823007|ref|ZP_07456383.1| epsilon subunit family exonuclease [Bifidobacterium dentium ATCC
           27679]
 gi|304553639|gb|EFM41550.1| epsilon subunit family exonuclease [Bifidobacterium dentium ATCC
           27679]
          Length = 186

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 12  FDIETTGLDSKNDR-IIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITDEF 69
            D ETTGL  +    IIEIGA+ +   ++  R  F+  + P  R       +L GI+D  
Sbjct: 2   LDTETTGLHPEEGATIIEIGALLVTPGNENARPRFEQLVDPQ-RPLPEFISRLTGISDGM 60

Query: 70  LKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINKDP-LDPSRI 123
           L++KP+  +    F  + ++     +    IAHNA+FD+GF++A  +  + D      R 
Sbjct: 61  LRNKPTADAAMLRFHQWLDDVWPAGRPLTVIAHNAEFDIGFLDAAERAHDPDANEFDCRW 120

Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + T  ++   +P  R+  ++ L   Y I      +H AL D+     +Y  +
Sbjct: 121 LCTKEMSWELNPQKRHHRVSDLIVDYRI--GDVEEHRALSDAIQEQMIYRAL 170


>gi|309801335|ref|ZP_07695464.1| exonuclease [Bifidobacterium dentium JCVIHMP022]
 gi|308222224|gb|EFO78507.1| exonuclease [Bifidobacterium dentium JCVIHMP022]
          Length = 187

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 12  FDIETTGLDSKNDR-IIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITDEF 69
            D ETTGL  +    IIEIGA+ +   ++  R  F+  + P  R       +L GI+D  
Sbjct: 3   LDTETTGLHPEEGATIIEIGALLVTPGNENARPRFEQLVDPQ-RPLPEFISRLTGISDGM 61

Query: 70  LKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINKDP-LDPSRI 123
           L++KP+  +    F  + ++     +    IAHNA+FD+GF++A  +  + D      R 
Sbjct: 62  LRNKPTADAAMLRFHQWLDDVWPAGRPLTVIAHNAEFDIGFLDAAERAHDPDANEFDCRW 121

Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + T  ++   +P  R+  ++ L   Y I      +H AL D+     +Y  +
Sbjct: 122 LCTKEMSWELNPQKRHHRVSDLIVDYRI--GDVEEHRALSDAIQEQMIYRAL 171


>gi|37677065|ref|NP_937461.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
 gi|37201610|dbj|BAC97431.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
          Length = 239

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 15/192 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              +++  +  D ETTGLD+K+D+I+ IG V+L        + +  L  +G     E+ +
Sbjct: 46  TPLHQVSFLALDFETTGLDAKHDKILSIGMVDLTLEGINLSSAEEILLNHGAYIKAESAR 105

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           ++G+T + L+   S        ++    Q    +AH+A  + GF+ A  Q+  +    P 
Sbjct: 106 INGLTPQALEQGCSLEQGMMRLFE--RAQGKVLLAHSAIIEQGFLQAFAQQHFQLAKLPC 163

Query: 122 RIIDTLSIARRK------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--- 172
             +DTL I +R          S   L+ L + Y +   H   H A  D+   ++++I   
Sbjct: 164 HFVDTLQIEKRFSYAGKSGQRSSFQLDDLRRCYHLPDYH--SHSAASDALACAELFIVQS 221

Query: 173 -KM-MVGGSQIN 182
            K+ +    Q+N
Sbjct: 222 KKLDLNKQRQLN 233


>gi|50843187|ref|YP_056414.1| putative DNA polymerase III epsilon subunit (exonuclease)
           [Propionibacterium acnes KPA171202]
 gi|50840789|gb|AAT83456.1| putative DNA polymerase III epsilon subunit (exonuclease)
           [Propionibacterium acnes KPA171202]
 gi|314924210|gb|EFS88041.1| exonuclease [Propionibacterium acnes HL001PA1]
 gi|314964999|gb|EFT09098.1| exonuclease [Propionibacterium acnes HL082PA2]
 gi|315106149|gb|EFT78125.1| exonuclease [Propionibacterium acnes HL030PA1]
          Length = 236

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 62/171 (36%), Gaps = 15/171 (8%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  D ET     G+ +      ++  V++ D    +R     + P    +S E   LHG
Sbjct: 69  FVAVDFETANRMGGVSA-----CQVAMVKVCDGQIVDR-LNTLIRPPKGWDSFEFTYLHG 122

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+   + D PS+++I      F +       AHNA FD        +      L P+   
Sbjct: 123 ISAADVADAPSWTNIADTVSHFVD--GVTVYAHNAAFDSRVWRQLDEHFGTTTL-PAPFF 179

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +   A+R  P      L ++           + H A  D+   + +  ++
Sbjct: 180 CSYRTAQRLIPGLPNYKLPTVL-HACAPNYQLNHHRADSDAEACALIVCEL 229


>gi|296314226|ref|ZP_06864167.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           polysaccharea ATCC 43768]
 gi|296839130|gb|EFH23068.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           polysaccharea ATCC 43768]
          Length = 408

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           +        L GI+D  + D P F+ I  E +     +    IAHN++FD  F+  E  R
Sbjct: 9   KPIPQFVSGLTGISDGMVADAPIFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHR 66

Query: 113 INKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                  P+  + ++ ++R  +P   ++ L+S+ +R GI +  R  H A+ D   L D
Sbjct: 67  AGIGFSSPA--LCSVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 120


>gi|197121230|ref|YP_002133181.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K]
 gi|196171079|gb|ACG72052.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K]
          Length = 206

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 15/176 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNG-RKNSPEALKLHGITDE 68
             D+ET GLD + D I+ +G V +   S +   +F   + P       P +++ H +   
Sbjct: 21  ALDLETGGLDPRRDAILAVGMVPVRLGSVRLGESFSTLIRPEATAAIDPGSIRAHQLVPH 80

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   PS  S+ ++  D    + A  + H A  DV F+    QR  +   DP  ++DT++
Sbjct: 81  DVASAPSLDSVLADV-DVRAREGALLV-HQASLDVAFLKRAYQRCGRRWPDP-PVVDTVA 137

Query: 129 IARRKHPSSRND----------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  +     R            LN L  R    +    +H AL D+   +++++ +
Sbjct: 138 LLIKAAKRQRFVDPDAPAIEPELNLLAARRRRGLPDYGQHDALTDAVATAELFLVL 193


>gi|298376895|ref|ZP_06986849.1| exonuclease [Bacteroides sp. 3_1_19]
 gi|298265879|gb|EFI07538.1| exonuclease [Bacteroides sp. 3_1_19]
          Length = 181

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R    D ET   + K   I  IG   L D    +  +   + P     +     +HG++ 
Sbjct: 3   RFAAIDFETA--NGKRSSICSIGIAILEDDWVVDSIY-TLVRPTPNFYTRWTTAIHGLSV 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E   D   F   +         ++   +AHN+ FD G + A  +  +           T 
Sbjct: 60  EDTNDALCFEEAWESIAP--KLKDLPLVAHNSPFDEGCLKAAHEVYDL-AYPKYPFYCTC 116

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            ++R+ +P    + L ++    G  ++    H A+ D++  + + + MM 
Sbjct: 117 RLSRKMYPFLVNHQLQTVAAHCGYDLTQH--HNAMADAYACAHIALTMMR 164


>gi|304411957|ref|ZP_07393568.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS183]
 gi|307303275|ref|ZP_07583030.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           BA175]
 gi|304349817|gb|EFM14224.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS183]
 gi|306913635|gb|EFN44057.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           BA175]
          Length = 228

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 18/194 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60
           +  ++   +  D+E TGL+ + D+I+ IG V +        R  Q  +    R +  ++ 
Sbjct: 35  MPLSEAPLVAMDLEMTGLNPQQDQILSIGLVPIEHGEIPLARAEQKLV--QIRGSVGQSA 92

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI D  L    +       F +         +AH+A  D  F+  +L  I    L  
Sbjct: 93  TIHGILDNHLVQAVTIEEAMGWFIN--QTYGRVLVAHHAPLDCRFLQQDLLAIYHQAL-V 149

Query: 121 SRIIDTLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI- 172
              IDTL + R +    ++        L +  +RYG+ I   + H AL D+    ++ + 
Sbjct: 150 LPAIDTLMLERHRLLREQSVIKEGSLRLGACRERYGLPIY--TAHSALTDALACGELLLA 207

Query: 173 --KMMVGGSQINFG 184
               M G  Q+   
Sbjct: 208 QMAAMGGAGQLTVA 221


>gi|149371985|ref|ZP_01891304.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49]
 gi|149355125|gb|EDM43686.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49]
          Length = 1476

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 85/239 (35%), Gaps = 21/239 (8%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL        +D     R I+I      +           + P G     +
Sbjct: 2   YLIFDTETTGLPRNWNAPLSDSDNWPRCIQIAWQLHDEMGNVIEHQDYLVQPEGFNIPFD 61

Query: 59  ALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
           A K+HGI+ E    K  S   + ++F +    +    +  N  FD+  + AE  R+  + 
Sbjct: 62  AEKIHGISTELAAAKGISLEDMMAKFQEVLG-KTKFLVGQNVGFDLNIMGAEFLRLGLEN 120

Query: 117 PLDPSRIIDTLSIARRKH------PSSRNDLNSLCKRYGITISH--RSKHGALLDSHLLS 168
           PL    ++DT + A  +          +  L +L + +    +      H A  D    +
Sbjct: 121 PLPDMPLLDTCTEATAQLCQIAGGRYGKFKLPTLTELHQFLFNSPFGEAHNATADVEATT 180

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
             + +++              D F    K+    I ++        + +++   E +K 
Sbjct: 181 RCFFELIRRQVFKAEELGVESDYFENFSKENPAPIEVIGLKHINLKKASEKIRRELEKL 239


>gi|294632065|ref|ZP_06710625.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
 gi|292835398|gb|EFF93747.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
          Length = 240

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 15/164 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   I FD+ETTG D +  RI+    +E+ D     R    +L   G    P+A+ 
Sbjct: 1   MGWHQELLIGFDLETTGTDPRTARIVTAAVIEVRDGEPAGRR--EWLADPGVPIPPDAVA 58

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGI+ E    +      +     +            +A+NA FD+  ++AEL+R     
Sbjct: 59  VHGISTERAAAEGQPADRVADAIAEALTGYWRAGVPVVAYNAAFDLTLLSAELRRYGLPS 118

Query: 118 L-------DPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITI 152
           L       +P  ++D  T+     ++   +  L ++C  YG+ +
Sbjct: 119 LADRLGGAEPGPVVDPYTIDRWADRYRRGKRTLEAVCTEYGVVL 162


>gi|261749200|ref|YP_003256885.1| DNA polymerase III epsilon chain [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497292|gb|ACX83742.1| putative DNA polymerase III epsilon chain [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 255

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 82/193 (42%), Gaps = 13/193 (6%)

Query: 2   IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           ++    R I  FDIE TG++   DRIIEI  +++  + ++ ++T+   + P      P++
Sbjct: 1   MKLRLYRPICFFDIEATGVNIGKDRIIEISILKIFPNGNQEDKTW--LIFPEI-PIPPKS 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP- 117
             +HGI DE +  +  F  +    +     +NA+   +N  +FD+  +  E+ R      
Sbjct: 58  TAIHGIKDEDVAGQLPFKDVAIHIFRMI--ENADLAGYNSNRFDIPILVEEMLRAGISFD 115

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +   + ID   I  +  P     L++  K Y    +    H +  D+    ++ +  +  
Sbjct: 116 IKKHKTIDVQVIFHKMEP---RTLSAAYKYY-CKKNLIKAHSSKADTFATYEILLAQLEK 171

Query: 178 GSQINFGFKTNED 190
              +    K+   
Sbjct: 172 YQDLKQDVKSLNQ 184


>gi|114319997|ref|YP_741680.1| DNA polymerase III subunit epsilon [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226391|gb|ABI56190.1| Exonuclease, RNase T and DNA polymerase III [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 240

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 73/180 (40%), Gaps = 23/180 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+ETTGLD     I+ IG V   L   +        L P  R    E++ LHGIT  
Sbjct: 51  VALDMETTGLDPDRHAIVSIGLVPFDLQRIRLPDRRHWLLQPP-RPLLSESITLHGITHS 109

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIIDTL 127
            L + P  S +  E  +    +    + H    +  F++ A   R+ +  L P  +IDT+
Sbjct: 110 DLANAPDLSEVLDELLEALAGRQP--VVHYRNIERPFLDTAVRARVGEGLLFP--VIDTM 165

Query: 128 SIARRKHPSS--------------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +  R+H  S                 L+    RYG+   H   H A+ D+   ++++  
Sbjct: 166 ELEARRHRQSGWSRLKRFLGQNPVPIRLHDSRLRYGLPAYH--SHHAVNDALATAELFQA 223


>gi|282855067|ref|ZP_06264399.1| exonuclease [Propionibacterium acnes J139]
 gi|282581655|gb|EFB87040.1| exonuclease [Propionibacterium acnes J139]
 gi|314982129|gb|EFT26222.1| exonuclease [Propionibacterium acnes HL110PA3]
 gi|315090368|gb|EFT62344.1| exonuclease [Propionibacterium acnes HL110PA4]
 gi|315093651|gb|EFT65627.1| exonuclease [Propionibacterium acnes HL060PA1]
 gi|315103870|gb|EFT75846.1| exonuclease [Propionibacterium acnes HL050PA2]
 gi|327325415|gb|EGE67219.1| putative DNA polymerase III epsilon subunit [Propionibacterium
           acnes HL103PA1]
          Length = 210

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 62/171 (36%), Gaps = 15/171 (8%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  D ET     G+ +      ++  V++ D    +R     + P    +S E   LHG
Sbjct: 43  FVAVDFETANRMGGVSA-----CQVAMVKVCDGQIVDR-LNTLIRPPKGWDSFEFTYLHG 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+   + D PS+++I      F +       AHNA FD        +      L P+   
Sbjct: 97  ISAADVADAPSWTNIADTVSHFVD--GVTVYAHNAAFDSRVWRQLDEHFGTTTL-PAPFF 153

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +   A+R  P      L ++           + H A  D+   + +  ++
Sbjct: 154 CSYRTAQRLIPGLPNYKLPTVL-HACAPNYQLNHHRADSDAEACALIVCEL 203


>gi|90408436|ref|ZP_01216597.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3]
 gi|90310470|gb|EAS38594.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3]
          Length = 237

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 12/182 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60
            + + +  +V D ETTGL +K + II IG VE+ +          +++  N +K + E  
Sbjct: 43  TKLSAISFLVVDFETTGLIAKYNDIISIGWVEISNLQVVCASQEHIYIN-NDKKINHETA 101

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            ++ I  + L+   S     +        +    + H    +  F++  + +    P  P
Sbjct: 102 VINHIVPQMLRQGVSLHDAINALL--IKAKGKILVVHGKVIEQCFLDFYMHQYFALPKIP 159

Query: 121 SRIIDTL--SIARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              IDTL     R           N L S   RY +     + H AL+DS   +++ +  
Sbjct: 160 LLWIDTLLIEKWRAVQKGMTLAQDNRLGSARIRYNLP--QYTAHNALIDSISTAELLLAQ 217

Query: 175 MV 176
           + 
Sbjct: 218 IA 219


>gi|86160112|ref|YP_466897.1| exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776623|gb|ABC83460.1| Exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 200

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 79/177 (44%), Gaps = 19/177 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPN-GRKNSPEALKLHGITDEF 69
            D+ET GLD++ D I+ +G + + +   +    ++  + P  G+  SP +++ H +    
Sbjct: 16  LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEQGKAVSPRSVQAHQLVAGD 75

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-- 127
            +  P+ + +  E       + A  + H+A  ++GF+    +        P  ++DT+  
Sbjct: 76  TRGAPALAEVLPELERRL--RGAVLLVHHAPIELGFLKRAFRAAGLRWPAP-PVVDTVKL 132

Query: 128 -----SIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                +  RR+ P         +L++  +R G+       H AL D+   +++++ +
Sbjct: 133 LLRLDARERRRFPELPADPPVLNLSAARRRLGLP--DYQAHDALTDAVATAELFLVL 187


>gi|29346841|ref|NP_810344.1| putative DNA polymerase III epsilon chain [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298386512|ref|ZP_06996068.1| exonuclease [Bacteroides sp. 1_1_14]
 gi|29338738|gb|AAO76538.1| putative DNA polymerase III epsilon chain [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298260889|gb|EFI03757.1| exonuclease [Bacteroides sp. 1_1_14]
          Length = 180

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 65/169 (38%), Gaps = 10/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + K   +  +G V + +     + +   + P     +     +HG+T  
Sbjct: 4   FAAIDFETA--NGKRTSVCSVGVVIVRNGKIVKKIY-RLIRPCPNYYTQWTTAVHGLTYA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             ++   F  +++E     +      +AHN+ FD G + A  +          +   T  
Sbjct: 61  DTEEAEDFPDVWAEIKPLID--GLPLVAHNSPFDEGCLKAVHELYEM-TYPNYKFYCTCR 117

Query: 129 IARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +R+        + L+++  R G  +++   H AL D+   + + + ++
Sbjct: 118 TSRKVFGKELPNHQLHTVAARCGYDLTNH--HHALADAEACAQIALLII 164


>gi|153838933|ref|ZP_01991600.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149747604|gb|EDM58532.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 236

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 12/178 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEAL 60
                +  +  D ETTG+D++ D+I+ IG V+  LD      + + ++C +G+   PE  
Sbjct: 45  TTLRDLSFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYIC-HGQFIKPETA 103

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K++G+T + L          +   +         +AH    +  FI+A      +    P
Sbjct: 104 KINGLTPQDLAKGLPLDEGMNRLLERI--TGKVVLAHGCCIEKAFIHAYFSSRYQVEDFP 161

Query: 121 SRIIDTLS------IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  IDTL        A +    S   L+ L + Y +       H A  D+   +++++
Sbjct: 162 AYFIDTLQIEKQFSYAGKSGAHSSYQLDDLRRYYHLP--GYLSHSAASDALACAELFL 217


>gi|300771841|ref|ZP_07081712.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761227|gb|EFK58052.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 1474

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 80/233 (34%), Gaps = 25/233 (10%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            I+FD ETTGL  + D          R I+I      D           + P+G     +
Sbjct: 2   YIIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDDMGNMVEHADFLIAPDGFNIPYD 61

Query: 59  ALKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
           + K+HGI+ E  ++           F +    +    +  N  FD+  +  E  R   + 
Sbjct: 62  SEKIHGISTELAQERGIPIQEALVRFNEAL-AKAKFVVGQNIGFDLNIMGCEFYRYGVES 120

Query: 117 PLDPSRIIDTLSIARRKH------PSSRNDLNSLCK----RYGITISHRSKHGALLDSHL 166
           P+    ++DT +    +          R  L +L +     +G+  +    H A  D   
Sbjct: 121 PMAGMPVLDTCTEVTAELLKLPGGRGGRYKLPNLTELHTYLFGVPFA--EAHNATADVEA 178

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +  +++++          + +   F + + +    I  +        + + E
Sbjct: 179 TTRCFLELVRLEVFTLDQLQQDTGYFVEFKTQNPGPIETVGLQHLNLKKASDE 231


>gi|261250461|ref|ZP_05943036.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
 gi|260939030|gb|EEX95017.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
          Length = 210

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 73/178 (41%), Gaps = 11/178 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHG 64
           K   +  D ETT LD     ++ I A +++D      + F+V L    +     ++K+H 
Sbjct: 27  KGEFVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLR-APQSLDSGSVKIHH 85

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I  + L D         +  +F   +    + ++ ++D   ++   ++    PL    I 
Sbjct: 86  IRHQDLADGIDEKQALIQLLEFIGNR--PLVGYHIRYDKKILDLACRKQLGFPLPNPLIE 143

Query: 125 DTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +     +      N      L+++CK   + + ++  H AL D+   + +++++  G
Sbjct: 144 VSQIYHDKLEKHLPNAYFDLSLDAICKHLDLPLQNK--HDALQDAIAAALIFVRLTKG 199


>gi|153006866|ref|YP_001381191.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030439|gb|ABS28207.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
          Length = 238

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 14/179 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGI 65
           M   V D E TGLD   D I+ IGAV + +        F     P    +  E + +HG+
Sbjct: 45  MTFTVLDCEMTGLDPARDEILSIGAVRIRNGRIVMAERFYQVFKPTEAVSPKEVILIHGL 104

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             + +               F    ++  I H    D+ F+NA L    +  L  +  +D
Sbjct: 105 GPDEVSRGLPLGDALERLLAFIG--DSVVIGHFTSVDLSFLNAALASRKERSL-KNPALD 161

Query: 126 T----LSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           T        RR  P+ +     +L  +    G+       H A  D+     V++K++ 
Sbjct: 162 TRLLYAWWRRRTSPAGQAAADANLEDIVIEMGLP--RYPAHHAFYDALTTGMVFLKLLG 218


>gi|54309681|ref|YP_130701.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9]
 gi|46914119|emb|CAG20899.1| putative DNA polymerase III, epsilon subunit [Photobacterium
           profundum SS9]
          Length = 239

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 27/201 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +  +++  +  D ETTGL++K D II IG V   L+    NR     + P  +K + +++
Sbjct: 42  MPLDEIEFVAMDFETTGLNAKKDGIITIGLVPFTLNRVYINRAQHWTVRP-RQKLNEQSV 100

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +H IT   + D P  S +          +    + H  + +  F++  L+   K+ ++ 
Sbjct: 101 VIHNITHNDILDAPDLSEVIEPVLAALAGR--VVVVHYRRIEREFLDRALKARIKEGIE- 157

Query: 121 SRIIDTLS-------------IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHL 166
             +IDTL                + K    ++  L    KRYG+     + H AL D+  
Sbjct: 158 FPVIDTLELEAQIQQRLNGGFWNKLKGKKPQSVRLAQARKRYGLP--AYTPHHALTDAIA 215

Query: 167 LSDVYIKMMVGGSQINFGFKT 187
            +++        +QI + +  
Sbjct: 216 TAELL------QAQIAYHYDA 230


>gi|224537614|ref|ZP_03678153.1| hypothetical protein BACCELL_02494 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520756|gb|EEF89861.1| hypothetical protein BACCELL_02494 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 164

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 9/161 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   +  +G V + +    + T+   + P     +    ++HG+T  
Sbjct: 4   FAAIDFETA--NEQRTSVCSVGIVIVREGEIVD-TYYSLIRPEPEYYTYWNTRVHGLTLA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P F +++ E       +    IAHN  FD   + A  +  + D  D      TLS
Sbjct: 61  DTAKAPIFPTVWQEIAPLI--EGLPLIAHNKGFDESCLKAVFRTYSLDYPD-YEFHCTLS 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            ARR+        L+++   +G  +     H AL D+   +
Sbjct: 118 TARRRIKGLPNYQLHTVAAYFGYELEQH--HHALADAEACA 156


>gi|119471955|ref|ZP_01614240.1| DNA polymerase III subunit epsilon [Alteromonadales bacterium TW-7]
 gi|119445213|gb|EAW26504.1| DNA polymerase III subunit epsilon [Alteromonadales bacterium TW-7]
          Length = 234

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 18/184 (9%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            +  +  D ETTGL+SK D I+ +G V         +  + ++    R  S  ++ +HGI
Sbjct: 42  DIPFVALDFETTGLNSKADDIVSVGLVPFTLARIYCKQSKHWVVQPRRNLSESSIVIHGI 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   + + P F +I +   D    +    + H A  + GF N+ L  +         ++D
Sbjct: 102 THNDVDNAPDFDNIIAPLLDALRSK--VIVVHYAAIERGFFNSALL-LRLKEHIEFMVVD 158

Query: 126 TLSIARRKHPSSRN-------------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           T+ + RR   + +               LN   KRY  ++     H AL D+   +++  
Sbjct: 159 TMELERRALKAKQGLIGQIFNTKLGSLRLNDCRKRY--SLPSYEGHHALTDALATAELLQ 216

Query: 173 KMMV 176
             + 
Sbjct: 217 AQLR 220


>gi|197124141|ref|YP_002136092.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K]
 gi|196173990|gb|ACG74963.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K]
          Length = 200

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 80/177 (45%), Gaps = 19/177 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPN-GRKNSPEALKLHGITDEF 69
            D+ET GLD++ D I+ +G + + +   +    ++  + P  G+  SP +++ H +    
Sbjct: 16  LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEQGKAVSPRSVQAHQLVAGD 75

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-- 127
            +  P+ + +  E       ++A  + H+A  ++GF+    +        P  ++DT+  
Sbjct: 76  TRGAPALAEVLPELERRL--RDAVLLVHHAPIELGFLKRAFRAAGLRWPGP-PVVDTVKL 132

Query: 128 -----SIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                +  RR+ P         +L++  +R G+       H AL D+   +++++ +
Sbjct: 133 LLRLDARERRRFPELPADPPVLNLSAARRRLGLP--DYQAHDALTDAVATAELFLVL 187


>gi|217972890|ref|YP_002357641.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS223]
 gi|217498025|gb|ACK46218.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS223]
          Length = 228

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 76/194 (39%), Gaps = 18/194 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60
           +  ++   +  D+E TGL+ + D+I+ IG V +        R  Q  +    R +  ++ 
Sbjct: 35  MPLSEAPLVAMDLEMTGLNPQQDQILSIGLVPIERGEIPLARAEQKLV--QIRGSVGQSA 92

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI D  L    +       F +         +AH A  D  F+  +L  I    L  
Sbjct: 93  TIHGILDNHLVQAVTIEEAMGWFIN--QTYGRVLVAHYAPLDCRFLQQDLLAIYHQALIL 150

Query: 121 SRIIDTLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI- 172
              IDTL + R +     +        L +  +RYG+ I   + H AL D+    ++ + 
Sbjct: 151 -PAIDTLMLERHRLLREHSVIKEGSLRLGACRERYGLPIY--TAHSALTDALACGELLLA 207

Query: 173 --KMMVGGSQINFG 184
               M G  Q+   
Sbjct: 208 QMAAMGGAGQLTVA 221


>gi|254227511|ref|ZP_04920943.1| exonuclease family [Vibrio sp. Ex25]
 gi|262396223|ref|YP_003288076.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|151940123|gb|EDN58949.1| exonuclease family [Vibrio sp. Ex25]
 gi|262339817|gb|ACY53611.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
          Length = 236

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 12/178 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEAL 60
                +  +  D ETTG+D++ D+I+ IG V+  LD      + + ++C +G+   PE  
Sbjct: 45  TTLKDLSFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYIC-HGQFIKPETA 103

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K++G+T + L          +   +         +AH    +  FI+A      +    P
Sbjct: 104 KINGLTPQDLAKGLPLDEGMNRLLERI--TGKVVLAHGCCIEKAFIHAYFSSRYQVEDFP 161

Query: 121 SRIIDTLS------IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  IDTL        A +    S   L+ L + Y +       H A  D+   +++++
Sbjct: 162 AYFIDTLQIEKQFSYAGKSGAHSSYQLDDLRRYYHLP--GYLSHSAASDALACAELFL 217


>gi|220918921|ref|YP_002494225.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956775|gb|ACL67159.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 200

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 75/177 (42%), Gaps = 19/177 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPN-GRKNSPEALKLHGITDEF 69
            D+ET GLD++ D I+ +G + + +   +    ++  + P  G+  SP +++ H +    
Sbjct: 16  LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEHGKAVSPRSVQAHQLVAGD 75

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +  P  + +  E       + A  + H+A  ++GF+    +        P  ++DT+ +
Sbjct: 76  TRGAPPLAEVLPELERRL--RGAVLLVHHAPIELGFLKRAFRAAGLRWPGP-PVVDTVKL 132

Query: 130 ARRKHPSSRND------------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             R     R              L++  +R G+       H AL D+   +++++ +
Sbjct: 133 LLRLDARERRSFPELPADPPVLNLSAARRRLGLP--DYQAHDALTDAVATAELFLVL 187


>gi|37681316|ref|NP_935925.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016]
 gi|37200067|dbj|BAC95896.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
          Length = 213

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 72/179 (40%), Gaps = 11/179 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLH 63
           N    +  D ETT LD     ++ I A +++D      + F+V L    +     ++K+H
Sbjct: 28  NNKEYVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLR-APQSLDSGSVKIH 86

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I  + L D  S      +  DF   +    + ++ ++D   ++    R    PL    +
Sbjct: 87  KIRHQDLVDGLSEKEALLKLIDFIGNR--PLVGYHIRYDKKILDLACLRHLGFPLANPLV 144

Query: 124 IDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +     +      N      L+++C+   + I  +  H AL D+   + V++++  G
Sbjct: 145 EVSQIYHDKLEKHLPNAYFDLSLDAICRHLDLPIQDK--HDALQDAIAAALVFVRLTRG 201


>gi|330505789|ref|YP_004382658.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
 gi|328920075|gb|AEB60906.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
          Length = 235

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 19/178 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTGLD     I+ +G V +          + ++     + S E++  H IT   
Sbjct: 46  VALDVETTGLDPHQHAIVSLGLVPMDLQRIRCAEARYWVVKPTSELSAESVTFHHITHSD 105

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P  +S+  E  +    +    +AH  K +  F++  L R++        IIDT+ +
Sbjct: 106 IRHAPRLASVLDELLEALAGK--VVVAHYRKIERNFLDQAL-RLHLGEGLMFPIIDTMEL 162

Query: 130 ARRKHPSSRND--------------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             R HP                   L    +RYG+     S H AL D+    ++   
Sbjct: 163 EARLHPRRSISWWDRLRGRQPLSIRLADSRERYGLPPY--SAHHALTDALACGELLQA 218


>gi|269962464|ref|ZP_06176813.1| putative DNA polymerase III, epsilon subunit [Vibrio harveyi 1DA3]
 gi|269832760|gb|EEZ86870.1| putative DNA polymerase III, epsilon subunit [Vibrio harveyi 1DA3]
          Length = 210

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 72/179 (40%), Gaps = 11/179 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLH 63
            K   +  D ETT LD     ++ I A +++D      + F+V L    +     ++K+H
Sbjct: 26  QKGEFVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLR-APQSLDSGSVKIH 84

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I  + L D  S      +  DF   +    + ++ ++D   ++    R    PL    I
Sbjct: 85  HIRHQDLVDGISEKEALIKLLDFIGNR--PLVGYHIRYDKKILDLACLRHLGFPLPNPLI 142

Query: 124 IDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +     +      N      L+++CK   + I  +  H AL D+   + VY+++  G
Sbjct: 143 EVSQIYHDKLERHLPNAYFDLSLDAICKHLELPIQDK--HDALQDAKSAALVYVRLTKG 199


>gi|323499174|ref|ZP_08104152.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
 gi|323315807|gb|EGA68840.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
          Length = 239

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 80/199 (40%), Gaps = 25/199 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
              +++  +  D ETTGLDS+ D II IG V   L+    N+     + P  +  + E++
Sbjct: 42  TPLDEVTFLAMDFETTGLDSEQDDIITIGTVPFTLNRILVNQAKHWTVRP-RKPLAEESV 100

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--------- 111
            +HGIT   + D P  + ++ +     + +    + H  + +  F N  LQ         
Sbjct: 101 VIHGITHSDVLDAPDLTEVYPQVLAEMSNR--IMVVHYQRIEREFFNRALQTRIQEGIEF 158

Query: 112 ----RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                +N + L   +    L    R        L +   RYG+     + H AL D+   
Sbjct: 159 PVVDTMNIETLWQQKENGGLLNKMRGRKPESVRLGASRSRYGLP--QYTPHHALTDAVAT 216

Query: 168 SDVYIKMMVGGSQINFGFK 186
           +++        +QI + ++
Sbjct: 217 AELL------QAQIAYHYE 229


>gi|259419276|ref|ZP_05743193.1| exodeoxyribonuclease 10 [Silicibacter sp. TrichCH4B]
 gi|259345498|gb|EEW57352.1| exodeoxyribonuclease 10 [Silicibacter sp. TrichCH4B]
          Length = 240

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 83/224 (37%), Gaps = 30/224 (13%)

Query: 11  VFDIETTGLDS-KNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           V D ETTG    +N ++IE G V++ LD       F+    P+     P  + +H ITD 
Sbjct: 11  VIDYETTGTQEDENAQVIEFGRVDVDLDTLGIVNPFRALAKPS-EPIPPVTMAVHHITDT 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P    ++  FWD    ++    AHNAKF+  F             +  + I T  
Sbjct: 70  DVADAPPPGQVWQPFWDGCRSED-YVAAHNAKFEQYF----------HDGNGRKWICTYK 118

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISH--------RSKHGALLDSHLLSDVYIKMMVGGS 179
            A    P    +   +L    GI   H        +  H AL D+++ + + ++++    
Sbjct: 119 SALVVWPDAPSHGNQALRYWLGIDNIHPSFDRDAAQPPHRALPDAYVTAHILLELLK--- 175

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
                    E     E    +  +   K     ++    + LD 
Sbjct: 176 ----HKTPEELVQISEYPALLTTLRFGKHKGMKYSEAPTDYLDW 215


>gi|295704398|ref|YP_003597473.1| exonuclease family protein [Bacillus megaterium DSM 319]
 gi|294802057|gb|ADF39123.1| exonuclease family protein [Bacillus megaterium DSM 319]
          Length = 197

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 62/169 (36%), Gaps = 19/169 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIG-AVELLD---YSKTN--RTFQVFLCPNGRKNSPEALKLH 63
            V D+ETTGL ++   IIE+  AV   D       +    ++ F         P    L 
Sbjct: 10  AVLDVETTGLSAQTCDIIELAIAVVSYDSSTGEIIDIVEEYEEF-NMPSTPIFPYITNLT 68

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT+E +K+K                  +  IAHNA FD  F+           L   + 
Sbjct: 69  GITNEMVKNKTLDDKKVESLL----TSVSAIIAHNASFDRSFLLKRY-----PSLSNQKW 119

Query: 124 IDTLSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             ++   + +++      L +L   + I   H   H A+ D     D+ 
Sbjct: 120 HCSMRAVKWKEYGFPNKKLTTLLDHHNIEREH--AHRAMDDVKGTIDLL 166


>gi|27364640|ref|NP_760168.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
 gi|320155034|ref|YP_004187413.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
 gi|27360785|gb|AAO09695.1| DNA polymerase III epsilon subunit [Vibrio vulnificus CMCP6]
 gi|319930346|gb|ADV85210.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
          Length = 211

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 72/179 (40%), Gaps = 11/179 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLH 63
           N    +  D ETT LD     ++ I A +++D      + F+V L    +     ++K+H
Sbjct: 26  NNKEYVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLR-APQSLDSGSVKIH 84

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I  + L D  S      +  DF   +    + ++ ++D   ++    R    PL    +
Sbjct: 85  KIRHQDLVDGLSEKEALLKLIDFIGNR--PLVGYHIRYDKKILDLACLRHLGFPLANPLV 142

Query: 124 IDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +     +      N      L+++C+   + I  +  H AL D+   + V++++  G
Sbjct: 143 EVSQIYHDKLEKHLPNAYFDLSLDAICRHLDLPIQDK--HDALQDAIAAALVFVRLTRG 199


>gi|239945175|ref|ZP_04697112.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
 gi|239991636|ref|ZP_04712300.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           11379]
 gi|291448639|ref|ZP_06588029.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998]
 gi|291351586|gb|EFE78490.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998]
          Length = 237

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 15/174 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   + FD+ETTG D ++DRI+    V L             L P G     +A  
Sbjct: 1   MSWHRGTLVGFDLETTGTDVESDRIVTAALVRLDPDGTVAEQRTWLLDP-GVVIPEQASA 59

Query: 62  LHGI-TDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGI TD   K     +S   E      E    +   +  NA++D+  ++ E +R     
Sbjct: 60  IHGIGTDHARKHGTRAASAVEEIAHAVAEVLRSDVPLVVMNARYDLSLLDRECRRYGLPS 119

Query: 118 LD------PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++      PS +ID L I +   K+   +  L +LC  YG+T+     H A  D
Sbjct: 120 VEERVDGAPSPVIDPLVIDKHVDKYRKGKRALQALCDHYGVTLDG--AHDATAD 171


>gi|194449117|ref|YP_002047241.1| exonuclease [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194407421|gb|ACF67640.1| exonuclease [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
          Length = 198

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 70/183 (38%), Gaps = 21/183 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL   +  I+EI  ++   +   N      + P  +    EA+ +HGIT+E 
Sbjct: 25  LFIDTETTGL-GDDAEIVEICIIDSHGFILLN----TLVKPT-KPIPDEAIAIHGITNEM 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS- 128
           +   P+++ I     +        ++ +NA +D+  I        +       ++   S 
Sbjct: 79  VAYAPAWTDICGAVEELIRRFG--FVIYNADYDLRLIRQTYALNGRPSEGAPWMLAAHSV 136

Query: 129 IARRKHPSSR-----------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            A + +   R           + L       G+ I  +  H AL D  +   V   +  G
Sbjct: 137 CAMKLYAEYRGEPGKYHGYKWHKLVDAAAHEGVVIEGK-AHRALADCKMTLGVIKALAQG 195

Query: 178 GSQ 180
           G++
Sbjct: 196 GAK 198


>gi|227875110|ref|ZP_03993255.1| DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35243]
 gi|227844388|gb|EEJ54552.1| DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35243]
          Length = 258

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 87/223 (39%), Gaps = 20/223 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+  + DRI     +  +    T   +   + P G     +A +++G+TDE+L+
Sbjct: 37  FDTETTGVWVRRDRIATASLIRRVGGEDT--AYNWVINP-GVPMPVKASEVNGLTDEYLE 93

Query: 72  D-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL------DP 120
                   + + I SE     +      +  N  FD   + AEL R     L        
Sbjct: 94  KHGEQPAVALAEIASELAAAMSS-GVPVVGFNVAFDFEILEAELARYELPTLRARLGGRI 152

Query: 121 SRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           + +ID L + R   ++   +  L ++C+ YG+   +R+ H A  D     D+   M+   
Sbjct: 153 APVIDPLVLDRTLDRYRRGKRKLATVCEAYGLD-GNRAFHQADSDVTATLDLLGAMIERY 211

Query: 179 SQI-NFGFKTNEDRFFKEEKKTVPNIS-LLKRDKPLFTRITKE 219
             +         D      +    N +  + R +P +  +  E
Sbjct: 212 ESLRGMELDELHDFQAAAHRTWAENFNEYMARTRPDYRPVNLE 254


>gi|189500246|ref|YP_001959716.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides
           BS1]
 gi|189495687|gb|ACE04235.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides
           BS1]
          Length = 232

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 20/198 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGI 65
           R +VFD ETTG D+  D +I IGAV  ++    +   +F+V +  +      +A+  HG+
Sbjct: 44  RYVVFDTETTGFDTSRDLVISIGAV-AINALHIDVQDSFEVLIRRDNV-GEKDAVTTHGL 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             + L +          F ++ +      +A +A FDV  IN  L R     L  + +ID
Sbjct: 102 LCKDLDEGGEEQESLDAFINYVSTG--VLVAQHADFDVAMINRMLHRYYGFELF-NHVID 158

Query: 126 TLSIARRK---------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           T S+A+R          H S    L+ L  RY I +  R  H A  D+ L + ++  ++ 
Sbjct: 159 TASLAKRLEKGPYFNLAHKSGEYRLDMLLDRYNIRMHDR--HTAAGDAFLTARLFQMLLA 216

Query: 177 GGSQINFGFKTNEDRFFK 194
                + G +T ++    
Sbjct: 217 KAE--HAGIRTLKELLLT 232


>gi|269977856|ref|ZP_06184812.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
 gi|306818377|ref|ZP_07452103.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|307701469|ref|ZP_07638488.1| exonuclease [Mobiluncus mulieris FB024-16]
 gi|269933936|gb|EEZ90514.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
 gi|304648886|gb|EFM46185.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|307613379|gb|EFN92629.1| exonuclease [Mobiluncus mulieris FB024-16]
          Length = 258

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 87/223 (39%), Gaps = 20/223 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+  + DRI     +  +    T   +   + P G     +A +++G+TDE+L+
Sbjct: 37  FDTETTGVWVRRDRIATASLIRRVGGEDT--AYNWVINP-GVPMPVKASEVNGLTDEYLE 93

Query: 72  D-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL------DP 120
                   + + I SE     +      +  N  FD   + AEL R     L        
Sbjct: 94  KHGEQPAVALAEIASELAAAMSS-GVPVVGFNVAFDFEILEAELARYELPTLRARLGGRI 152

Query: 121 SRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           + +ID L + R   ++   +  L ++C+ YG+   +R+ H A  D     D+   M+   
Sbjct: 153 APVIDPLVLDRTLDRYRRGKRKLATVCEAYGLD-GNRAFHQADSDVTATLDLLGAMVERY 211

Query: 179 SQI-NFGFKTNEDRFFKEEKKTVPNIS-LLKRDKPLFTRITKE 219
             +         D      +    N +  + R +P +  +  E
Sbjct: 212 ESLRGMELDELHDFQAAAHRTWAENFNEYMARTRPDYRPVNLE 254


>gi|167771957|ref|ZP_02444010.1| hypothetical protein ANACOL_03330 [Anaerotruncus colihominis DSM
           17241]
 gi|167665755|gb|EDS09885.1| hypothetical protein ANACOL_03330 [Anaerotruncus colihominis DSM
           17241]
          Length = 270

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 93/215 (43%), Gaps = 13/215 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLC-PNGRKNSPEALKLHG 64
           I+FD ET+GLD   D+IIE+ A+ +        +       F+  P G++ + + ++L G
Sbjct: 39  ILFDTETSGLDFDKDQIIELAALRIEQTAAKGLRIAGQMDQFIRLPEGQQLTEKIVELTG 98

Query: 65  ITDEFL-KDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPS 121
           ITD  L  +  +     + F    N  +     +AHNA+FD+ F+ + L+          
Sbjct: 99  ITDRILEAEGVAPHKAATAFAKLINAGDGPVLLVAHNAQFDLLFVRSLLK--GVKLAPRL 156

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
             +DTL++ + + P   + L      Y +    ++ H A+ D   + +V   M  G  + 
Sbjct: 157 EFLDTLTVYKDRRP-YPHKLADAIIAYDLDGKVKNSHRAIDDVTAMLEVLRAM--GEERD 213

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           +     N   +  +       IS ++ +   F +I
Sbjct: 214 DLALYVNLFGYNAKYGVNGRRISGIRYEAQEFHKI 248


>gi|309810273|ref|ZP_07704115.1| exonuclease [Dermacoccus sp. Ellin185]
 gi|308435765|gb|EFP59555.1| exonuclease [Dermacoccus sp. Ellin185]
          Length = 534

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 10/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLHGIT 66
               D ET   +S       +G V        +R +   + P    +  +A   +LHGI 
Sbjct: 6   FTAIDFETA--NSYRGSPCSVGLVRFRGGRPVDRAY-WLIRPPAAASHFDAFNTQLHGID 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + ++D+PS++   +E  +F  +     ++HNA FD+G I                   T
Sbjct: 63  ADTVRDQPSWAGRLTEIVEFIGDD--IVVSHNASFDIGVIRYACAADGIAW-PRIDFFCT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L  ARR        L  +   YG  ++    H AL D+     V + M
Sbjct: 120 LVAARRHLRLPSYRLPFVLDAYGAEVNDH--HHALADAEAAGRVAVLM 165


>gi|282598821|ref|YP_003359140.1| putative exonuclease [Clavibacter phage CMP1]
 gi|262212609|gb|ACY35945.1| putative exonuclease [Clavibacter phage CMP1]
          Length = 236

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 88/213 (41%), Gaps = 13/213 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M R +K   +VFD ET+G+D +NDRI+    + L+D   T   F  +L   G      A 
Sbjct: 1   MPRVDK--IMVFDTETSGVDVENDRIVT-AFIGLMDPDGTMTEFHEWLIDPGIPIPEGAS 57

Query: 61  KLHGITDE--FLKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
            +HGIT E    + +        E     D+ +  N   +  NA +D+  ++ EL+R   
Sbjct: 58  DIHGITTEKAHAEGRKDIDKALMEIATKLDYASRWNYPVVIMNAPYDLTILDRELRRHVG 117

Query: 114 NKDPLDPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            K+   P+ ++DT  I ++ +        L  L + YG+ +   + H A  D  +   V 
Sbjct: 118 IKNFRAPNVVLDTFVIDKKLYTFRKGSRKLVDLARIYGVPVE-ENAHDAQADCRMAGRVT 176

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204
           +K +               R  K +     ++ 
Sbjct: 177 LKQLQHEWLAPLTLAQIHHRQIKNKADQAASLQ 209


>gi|294499074|ref|YP_003562774.1| exonuclease family protein [Bacillus megaterium QM B1551]
 gi|294349011|gb|ADE69340.1| exonuclease family protein [Bacillus megaterium QM B1551]
          Length = 197

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 64/178 (35%), Gaps = 19/178 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIG-AVELLD---YSKTN--RTFQVFLCPNGRK 54
           M  +      V D+ETTGL ++   IIE+  AV   D       +    ++ F       
Sbjct: 1   MSTEQVKLAAVLDVETTGLSAQTCDIIELAIAVVSYDSSTGEIIDIVEEYEEF-NMPSTP 59

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P    L GIT+E +K+K                  +  IAHNA FD  F+        
Sbjct: 60  IFPYITNLTGITNEMVKNKTLDDKKVESLL----TSVSAIIAHNASFDRSFLLKRY---- 111

Query: 115 KDPLDPSRIIDTLSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              L   +   ++   + +++      L +L   + I   H   H A+ D     D+ 
Sbjct: 112 -PSLFNQKWHCSMRAVKWKEYGFPNKKLTTLLDHHNIEREH--AHRAMDDVKGTIDLL 166


>gi|260902236|ref|ZP_05910631.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308110524|gb|EFO48064.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
          Length = 236

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 12/178 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEAL 60
                +  +  D ETTG+D++ D+I+ IG V+  LD      + + ++C +G+   PE  
Sbjct: 45  TTLKDLSFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYIC-HGQFIKPETA 103

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +++G+T + L          +   +         +AH    +  FI+A      +    P
Sbjct: 104 QINGLTPQDLAKGLPLDEGMNRLLERI--TGKVVLAHGCCIEKAFIHAYFSSRYQVEDFP 161

Query: 121 SRIIDTLS------IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  IDTL        A +    S   L+ L + Y +       H A  D+   +++++
Sbjct: 162 AYFIDTLQIEKQFSYAGKSGAHSSYQLDDLRRYYHLP--GYLSHSAASDALACAELFL 217


>gi|290961805|ref|YP_003492987.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260651331|emb|CBG74453.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 233

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 67/174 (38%), Gaps = 17/174 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             FD ETTG+D + DRI+    V         R  +  + P G      A  +HG+TDE 
Sbjct: 2   AAFDTETTGVDVETDRIVSAAVVVQDAPGTRPRVTRWLVNP-GVPVPAGATAVHGLTDER 60

Query: 70  LKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--- 121
           L+       P    I     +    +    +  NA FD+  ++ EL+R     LD     
Sbjct: 61  LQRDGRWPAPVMEEIARALAE-QAVRGRPLVVMNAPFDLTLLDRELRRHRASSLDRWFEA 119

Query: 122 ---RIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              R++D   L     ++   R  L  LC  Y + +     H A  D+    DV
Sbjct: 120 TPLRVLDPRVLDKHLDRYRKGRRTLTDLCAHYEVVLDG--AHDAGADAQAAMDV 171


>gi|221369901|ref|YP_002520997.1| Exonuclease [Rhodobacter sphaeroides KD131]
 gi|221162953|gb|ACM03924.1| Exonuclease [Rhodobacter sphaeroides KD131]
          Length = 293

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 15/177 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI +   R I  D+ET   D+ +   I +  V   +      TF   + P G +  P  +
Sbjct: 4   MIPEGDFRFIALDVETACSDAGSICQIGLACVFPDNR---IHTFSTLVNP-GTRFDPFNV 59

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +LHGI  + +     F  +    +   +      + H + FD   +NA  +   ++P D 
Sbjct: 60  RLHGIGPDHVSGALRFDELLDHLFPLLSRH--HLVQH-SNFDKQALNAACRSCGREPPD- 115

Query: 121 SRIIDTLSIARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R  D+++IARR  P       + L +L +  G+  +H   H A  D+   + V + 
Sbjct: 116 FRWADSVTIARRAWPELLRNGGHGLGNLKRVLGLDFNH---HDAGEDARAAALVVLH 169


>gi|311895419|dbj|BAJ27827.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 235

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 18/165 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG D +  RI+    V+ L       T   +L   G     EA  +HGITD   +
Sbjct: 11  FDLETTGTDPEESRIVTAAVVDTLGGGVQGAT--TWLLDPGVPIPDEAAAIHGITDAEAR 68

Query: 72  -----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL------DP 120
                   +   I     +         +A NA FD+  ++AEL+R     L        
Sbjct: 69  ANGRPAAEAIEEIARTLAERLAA-GRPVVAFNAPFDLSLLDAELRRHGLPTLADRLGGPV 127

Query: 121 SRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + ++D + + R   K+      L  +C+ YG+ +  R  H A  D
Sbjct: 128 APVVDAMVVDRALDKYRKGSRTLQRVCEVYGVEL--RDAHEAGSD 170


>gi|89072943|ref|ZP_01159490.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
 gi|89051161|gb|EAR56617.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
          Length = 249

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 74/202 (36%), Gaps = 27/202 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
                +  +  D ETTGL++  D II +G V   ++     ++    + P   K   +++
Sbjct: 52  TPLKDIEFVALDFETTGLNANKDDIISVGLVPFNINRIFCKQSQHWVVKPK-AKLDEDSV 110

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGIT   ++  P    I     D         + H    +  F++  L R+  +    
Sbjct: 111 IIHGITHSDVQTAPDIRRILEAVLDSLA--GKVVVVHYKAIERQFMDKAL-RVRLNEGIQ 167

Query: 121 SRIIDTLS-------------IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             ++DTL+             +AR K        L     RYG+       H AL D+  
Sbjct: 168 FPVVDTLALESHIQTQQYSGFLARLKGKKPGSVRLGKCRIRYGLP--AYQPHHALTDALA 225

Query: 167 LSDVYIKMMVGGSQINFGFKTN 188
            +++        +QI +    +
Sbjct: 226 TAELL------QAQIAYHLTPD 241


>gi|300933403|ref|ZP_07148659.1| exonuclease, RNase T and DNA polymerase III [Corynebacterium
           resistens DSM 45100]
          Length = 1144

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 103/250 (41%), Gaps = 18/250 (7%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
             R  V D+ETTG   K DR+IEIG V L       RT++  + PN  ++ P +  +H +
Sbjct: 4   PQRYAVIDLETTGFS-KTDRVIEIGVVLLDQAGNVERTWETIVQPN--RDIPNSF-VHKL 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRII 124
           T   L   P F  I               IAHNA FD+ F+ +E +RI    P   + + 
Sbjct: 60  TPSHLVHAPLFEEIAE--ELAEILHGRTIIAHNAPFDIRFLTSEFERIGVALPAYGAWVH 117

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---MVGGSQI 181
           DTL + R+  P +   L  + K  GIT      H AL D+   +++Y  +   +   +  
Sbjct: 118 DTLPLCRQCFPGTNGSLEKVTKLLGITND--RPHAALADALATAEIYRHLRNDLGRVASG 175

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDK------PLFTRITKEELDEHDKTIQTLGKNA 235
                     + +  +    + +     +       L  ++  E         + L   A
Sbjct: 176 AARLVVPPATYPRRGRAISRDDANGAAPRDGSWLAGLAAKLPAERGTADSDRYRKLLAAA 235

Query: 236 IWDRYISSNQ 245
           + D+Y+S+++
Sbjct: 236 LADKYLSASE 245


>gi|290991983|ref|XP_002678614.1| predicted protein [Naegleria gruberi]
 gi|284092227|gb|EFC45870.1| predicted protein [Naegleria gruberi]
          Length = 302

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 15/182 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +V DIE T  ++   R+IE+    ++D +    +F   +  +         ++  I
Sbjct: 78  RYNVVVLDIEGTSTNTSYCRMIEVACARIVDGTSI-SSFTSLVNADIDYIPEPVQEITKI 136

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123
           T   +   P    + S+ ++F + Q +  + HN +FD   I  E  R      +  +   
Sbjct: 137 TKAMIDLSPPPQIVLSQLYNFLSSQPSLVVGHNVRFDASVIYNEFVRYKIINNEVHKPDD 196

Query: 124 ----------IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                     + TL +ARR         L +L +  G+  S  + H A  D  + + ++ 
Sbjct: 197 FISHSLFTNTLCTLKLARRLFQGQPDYKLGNLVENLGLGRS-INAHRAHADVSMTTLLWR 255

Query: 173 KM 174
           ++
Sbjct: 256 RI 257


>gi|28899929|ref|NP_799584.1| putative DNA polymerase III, epsilon subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260363223|ref|ZP_05776092.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|260880510|ref|ZP_05892865.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260898537|ref|ZP_05907033.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|28808212|dbj|BAC61417.1| putative DNA polymerase III, epsilon subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308085005|gb|EFO34700.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308092696|gb|EFO42391.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308112379|gb|EFO49919.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
          Length = 236

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 12/178 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEAL 60
                +  +  D ETTG+D++ D+I+ IG V+  LD      + + ++C +G+   PE  
Sbjct: 45  TTLKDLSFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYIC-HGQFIKPETA 103

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K++G+T + L          +             +AH    +  FI+A      +    P
Sbjct: 104 KINGLTPQDLAKGLPLDEGMNRLLKRI--TGKVVLAHGCCIEKAFIHAYFSSRYQVEDFP 161

Query: 121 SRIIDTLS------IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  IDTL        A +    S   L+ L + Y +       H A  D+   +++++
Sbjct: 162 AYFIDTLQIEKQFSYAGKSGAHSSYQLDDLRRYYHLP--GYLSHSAASDALACAELFL 217


>gi|306841731|ref|ZP_07474417.1| DNA polymerase III, epsilon chain [Brucella sp. BO2]
 gi|306288136|gb|EFM59523.1| DNA polymerase III, epsilon chain [Brucella sp. BO2]
          Length = 193

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 4/151 (2%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSE 82
            DRII +GAV++       ++    +    + +SP+A  +HG  +   + +  F  + + 
Sbjct: 3   YDRIITLGAVKIEGDELLTQSLY-LIFDPRKDSSPQAEAIHGFDNWMTRYQDLFHELAAP 61

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN 142
              +F+  + E +AHNA+FD+ +I  E ++   D LD   +  T+  ARR        L+
Sbjct: 62  IRKWFSWAD-EVVAHNAQFDIHYIQREFRKAEVDMLD-QPVYCTMEGARRLWRGDPAKLD 119

Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               + G+  +   +HGAL D++L + +Y+ 
Sbjct: 120 HCLAKIGLARTGH-RHGALEDAYLTAGLYLH 149


>gi|189499454|ref|YP_001958924.1| Exonuclease RNase T and DNA polymerase III [Chlorobium
           phaeobacteroides BS1]
 gi|189494895|gb|ACE03443.1| Exonuclease RNase T and DNA polymerase III [Chlorobium
           phaeobacteroides BS1]
          Length = 159

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 6/112 (5%)

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E LKDKP    +  EF  F  + N   +AHNA FD  F+++EL+R N+         
Sbjct: 8   ITNEMLKDKPCCEEVMLEFSGFIADHN--IVAHNASFDRRFLDSELKRANRKY--EGSCC 63

Query: 125 DTLSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +L ++RR +  S  + L +L    GI     + H AL D+ + + +++ M+
Sbjct: 64  CSLLLSRRVYQDSPNHTLQTLVSHAGIP-ETGTFHRALADAEMTAYLWLSMI 114


>gi|227540116|ref|ZP_03970165.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227239977|gb|EEI89992.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 1474

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 80/236 (33%), Gaps = 25/236 (10%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            I+FD ETTGL  + D          R I+I      D           + P+G     +
Sbjct: 2   YIIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDDMGNMVEHADFLIAPDGFNIPYD 61

Query: 59  ALKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
           + K+HGI+ E  ++           F +    +    +  N  FD+  +  E  R   + 
Sbjct: 62  SEKIHGISTELAQERGIPIQEALVRFNEAL-AKAKFVVGQNIGFDLNIMGCEFYRYGVES 120

Query: 117 PLDPSRIIDTLSIARRKH------PSSRNDLNSLCK----RYGITISHRSKHGALLDSHL 166
           P+    ++DT +    +          R  L +L +     +G+  +    H A  D   
Sbjct: 121 PMAEMPVLDTCTEVTAELLKLPGGRGGRFKLPNLTELHTYLFGVPFA--EAHNATADVEA 178

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
            +  +++++          + +   F + + +    I  +        + + E   
Sbjct: 179 TTRCFLELVRLEVFTLDQLQQDTGYFVEFKTQNPGPIETVGLQHLNLKKASDEIRA 234


>gi|255011868|ref|ZP_05283994.1| putative exonuclease [Bacteroides fragilis 3_1_12]
 gi|313149703|ref|ZP_07811896.1| DNA polymerase III [Bacteroides fragilis 3_1_12]
 gi|313138470|gb|EFR55830.1| DNA polymerase III [Bacteroides fragilis 3_1_12]
          Length = 175

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 14/178 (7%)

Query: 9   KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
               D ET TG     +    +G V + D   T+  +   + P   +     + +HGIT 
Sbjct: 5   FAAIDFETATG---YMESACAVGIVTVTDGEITDEYYS-LIQPPENEYWRANILVHGITP 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSRII 124
           E  +  P F +I+ E       Q    +AHN +FD   +   ++    D    L P    
Sbjct: 61  EMTESLPGFHAIYPEIKKRL--QGKVVVAHNEQFDRNVLKRTMRMYRLDYDELLLPEHWE 118

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            T  I R        +L++ C+R GI + H   H AL D+   + +Y+  +      N
Sbjct: 119 CTCRIYRSLG-YKPVNLSACCEREGIELKH---HEALSDARGCAKLYLNYLERYRPFN 172


>gi|156974590|ref|YP_001445497.1| hypothetical protein VIBHAR_02308 [Vibrio harveyi ATCC BAA-1116]
 gi|156526184|gb|ABU71270.1| hypothetical protein VIBHAR_02308 [Vibrio harveyi ATCC BAA-1116]
          Length = 217

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 64/185 (34%), Gaps = 25/185 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M + +    I+ D ETTGL S    IIE  A+               + P       EA 
Sbjct: 11  MKKLSTENAIIIDTETTGLGSDT-EIIEFTAICADSGKVIVNE---LVKPTC-SIPAEAT 65

Query: 61  KLHGITDEFLKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--- 116
            +HGITDE +KD P F  +FS  F    N +    I +N+ FD   I   L +       
Sbjct: 66  AIHGITDEDVKDAPDFHLVFSNYFLPLLNGR--PIIIYNSDFDTRLIIQSLDKHCNAAYV 123

Query: 117 ------PLDPSRIIDTLSIARRKHP--SSRN------DLNSLCKRYGITISHRSKHGALL 162
                           +          +  +       L + C +  + +S  + H AL 
Sbjct: 124 QSVHDLFFKFCVPQCAMLWYAEFFGVLNEHHEDYKWQSLTNACAQQQVDVSDLTAHRALA 183

Query: 163 DSHLL 167
           D  + 
Sbjct: 184 DCEMT 188


>gi|332557484|ref|ZP_08411806.1| Exonuclease [Rhodobacter sphaeroides WS8N]
 gi|332275196|gb|EGJ20511.1| Exonuclease [Rhodobacter sphaeroides WS8N]
          Length = 309

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 74/215 (34%), Gaps = 22/215 (10%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + R I  D+ET   D  +  I +IG +  +D+      F   + P           +HGI
Sbjct: 25  RFRFIAVDVETATADPAS--ICQIG-LACIDHQNGFHLFSTLVDPE-VPIDYRNRAIHGI 80

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D  ++  P F    +   +      +  + H + FD     A   R    PL  +   D
Sbjct: 81  CDGDVRGMPCFPVAMAAMRELLEA--SPLVEH-SSFDHRAFAAACARYGLPPLS-ASWHD 136

Query: 126 TLSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++  AR   P  +    + L+S+C    +   H   H A  D++  + +   ++   ++ 
Sbjct: 137 SVRAARNAWPHLKGNGGHGLSSVCAHLALEFDH---HDAGADAYACASI---ILAAEAET 190

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
              F       F          S   R  P   R 
Sbjct: 191 GASFPD----LFAPAPTARRQRSEPVRRAPSPGRA 221


>gi|320159156|ref|YP_004191534.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
 gi|319934468|gb|ADV89331.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
          Length = 238

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 15/192 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              +++  +  D ETTGLD+K+D+I+ IG V+L        + +  L  +G     E+ +
Sbjct: 45  TPLHQVSFLALDFETTGLDAKHDKILSIGMVDLTLEGINLSSAEEILLNHGAYIKAESAR 104

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           ++G+T + L+   S        ++    Q    +AH+A  + GF+    Q+  +    P 
Sbjct: 105 INGLTPQALEQGCSLEQGMMRLFE--RAQGKVLLAHSAIIEQGFLQTFAQQHFQLAKLPC 162

Query: 122 RIIDTLSIARRK------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--- 172
             +DTL I +R          S   L+ L + Y +   H   H A  D+   ++++I   
Sbjct: 163 HFVDTLQIEKRFSYAGKSGQRSSFQLDDLRRCYHLPDYH--SHSAASDALACAELFIVQS 220

Query: 173 -KM-MVGGSQIN 182
            K+ +    Q+N
Sbjct: 221 KKLDLNKQRQLN 232


>gi|302519905|ref|ZP_07272247.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
 gi|302428800|gb|EFL00616.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
          Length = 270

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 93/254 (36%), Gaps = 37/254 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M + +  R   FD+ET+G+D + DRI+   A   L   +        L P G +    A 
Sbjct: 1   MTQWHLGRLCAFDLETSGVDVEADRIVTAAAY-GLGGGEPVEPHDWMLDP-GVEIPAGAT 58

Query: 61  KLHGITDEFLKDKPSFS----SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            +HGIT +  + K   +       S+    +       + HN  +D   ++ E +R    
Sbjct: 59  AVHGITTDEARAKGEPAPGGIDHISDVLAEYARAGVAVVGHNVPYDFTLLDRECRRYELP 118

Query: 117 PLD-----------PSRIIDTLSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALL 162
            L             +R++D  +   R+ PS       L +L + Y +       HGA  
Sbjct: 119 TLHDRLGETPLYVIDTRVLDQHADPYRRRPSKDQGARQLVTLAQVYELPWDDEGAHGAAY 178

Query: 163 DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK-PLFTRITKEEL 221
           D+ L + V            +   T      ++  +    I  ++R +   F  ++  EL
Sbjct: 179 DAVLAARV-----------AYRIGTLAHMPREDWPE---RIRTVRRPRYGDFAELSLAEL 224

Query: 222 DEHDKTIQTLGKNA 235
             H + I+     A
Sbjct: 225 --HARQIELAADQA 236


>gi|90579019|ref|ZP_01234829.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
 gi|90439852|gb|EAS65033.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
          Length = 249

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 25/201 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
                +  +  D ETTGL++  D II +G V         +  Q ++     K   +++ 
Sbjct: 52  TPLKDIEFVALDFETTGLNANKDDIISVGLVPFTINRIFCKQSQHWVVKPKAKLDEDSVI 111

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT   ++  P    I     D         + H    +  F++  L R+  +     
Sbjct: 112 IHGITHSDVQTAPDIRRILEAVLDSLA--GKVVVVHYKAIERQFMDKAL-RVRLNEGIQF 168

Query: 122 RIIDTLS-------------IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            ++DTL+             +AR K        L     RYG+       H AL D+   
Sbjct: 169 PVVDTLALESHIQTQQYRGFLARLKGKKPGSVRLGKCRIRYGLP--AYQPHHALTDALAT 226

Query: 168 SDVYIKMMVGGSQINFGFKTN 188
           +++        +QI + F  +
Sbjct: 227 AELL------QAQIAYHFSPD 241


>gi|18466779|ref|NP_569586.1| hypothetical protein HCM2.0114c [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16506095|emb|CAD09981.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
          Length = 185

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 67/172 (38%), Gaps = 7/172 (4%)

Query: 7   MRKIV--FDIETTGLDS-KNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62
           M  IV   DIE+TGLD     +IIEI       +  K   + ++   P  R   P+A  +
Sbjct: 1   MTTIVGGVDIESTGLDFTSGHKIIEIAITRYELETQKHIDSLEMRFNP-RRSIDPKAQAV 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
           HGI+ E L  +P  +    +   +    +A  +AHN   FD+ FI  E         D  
Sbjct: 60  HGISLEDLATEPLLADHAGKIAAYMGACSA-LVAHNGEAFDLPFIRHEFGSYGVKLPDIP 118

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +   L          R  L  L    G T      H AL D+ L+   + K
Sbjct: 119 LVDSMLDGLWATEDGKRPRLEELAFSLGFTYDREKAHSALYDTDLMMQCFFK 170


>gi|328469916|gb|EGF40827.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 10329]
          Length = 236

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 74/178 (41%), Gaps = 12/178 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEAL 60
                +  +  D ETTG+D++ D+I+ IG V+  LD      + + ++C +G+   PE  
Sbjct: 45  TTLKDLSFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYIC-HGQFIKPETA 103

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +++G+T + L          +   +         +AH    +  FI+A      +    P
Sbjct: 104 QINGLTPQDLAKGLPLDEGMNRLLERI--TGKVVLAHGCCIEKAFIHAYFSSRYQVEDFP 161

Query: 121 SRIIDTLS------IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  +DTL        A +    S   L+ L + Y +       H A  D+   +++++
Sbjct: 162 AYFVDTLQIEKQFSYAGKSGAHSSYQLDDLRRYYHLP--GYLSHSAASDALACAELFL 217


>gi|297203185|ref|ZP_06920582.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
 gi|197717364|gb|EDY61398.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
          Length = 240

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 15/165 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   I FD+ETTG D +  RI+    +EL D     R    +L   G +   +A+ 
Sbjct: 1   MGWHRELLIGFDLETTGTDPREARIVTAAVIELRDGQSLGRR--EWLADPGMEIPADAVA 58

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKD- 116
           +HGI++E    +      +     D      +     +A+NA FD+  ++AEL+R     
Sbjct: 59  VHGISNERAAAEGRPADQVADAIADVLTTYWKTGVPVVAYNAAFDLSLLSAELRRYGLPS 118

Query: 117 ------PLDPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITIS 153
                  LDP+ +ID  T+  +  ++   + +L ++C  YG+ + 
Sbjct: 119 LRERLGGLDPAPVIDPYTIDRSVDRYRRGKRNLEAVCTEYGVALD 163


>gi|108802442|ref|YP_642638.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
 gi|119855268|ref|YP_935871.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
 gi|108772861|gb|ABG11582.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
 gi|119697985|gb|ABL95056.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
          Length = 193

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 7/178 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ET+G D    RI+ + A+ +     T       L P      P    +HG+T  
Sbjct: 7   FVVVDVETSGFDPHTARILSVAALVVTTNGVTTTALHTLLDPG---VDPGPTDIHGLTTA 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  +P ++ I ++     + +    +AHNA FD  F+ AE +R     L  S ++ TL 
Sbjct: 64  MLAGQPRYADIATDLAALLSGR--ILVAHNAAFDYAFLAAEARRA-GAELPVSSVLCTLE 120

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           +A R H    +   +    +   I     H AL D+ +L+ V         ++     
Sbjct: 121 LAGRLHLDLASLSLAALAHH-WNIPQARPHDALDDARVLTHVLRHARARADELAVPLP 177


>gi|293372511|ref|ZP_06618893.1| putative DNA polymerase III subunit epsilon [Bacteroides ovatus SD
           CMC 3f]
 gi|292632320|gb|EFF50916.1| putative DNA polymerase III subunit epsilon [Bacteroides ovatus SD
           CMC 3f]
          Length = 198

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 68/169 (40%), Gaps = 10/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + K   +  +G V + +   TN+ +   + P     +     +HG+T +
Sbjct: 4   FAAIDFETA--NGKRTSVCSVGVVIVREGKITNKIY-RLIRPRPNYYTQWTTAVHGLTYD 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              +   F  +++E     +      +AHN+ FD G + A  +  +       +   T  
Sbjct: 61  DTMEADEFPEVWAEIKPLID--GLPLVAHNSPFDEGCLRAVHELYDM-TYPDYKFYCTCR 117

Query: 129 IARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +R+        + L+++ +R G  + +   H AL D+   + + + ++
Sbjct: 118 TSRKVFGKDLPNHQLHTVAERCGYHLENH--HHALADAEACAQIALLII 164


>gi|227487527|ref|ZP_03917843.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC
            51867]
 gi|227092509|gb|EEI27821.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC
            51867]
          Length = 2526

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 8/171 (4%)

Query: 9    KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
              V +++T+G+  + DRIIEIG V      K   T+   + P    +      +HGI++ 
Sbjct: 2129 FAVLNVKTSGIS-ERDRIIEIGIVLATLNGKVEGTYTTLINPRRSFSD---SAIHGISER 2184

Query: 69   FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 P F  +  +  +  + +    IAH+A F    +  E  R N   +  +    T+S
Sbjct: 2185 MTVAAPVFEEVADDIAELLDRR--ILIAHDAPFVSKQLGREFSRSNVKAIHLNDGYCTMS 2242

Query: 129  IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             + +   SS   L+S     G+   H   H AL D+   +++   ++  G+
Sbjct: 2243 HSPKLLGSSGRSLSSALDAAGLKNEH--SHCALDDAMATANLLNVLLHKGA 2291


>gi|262392974|ref|YP_003284828.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|262336568|gb|ACY50363.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
          Length = 209

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 11/179 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLH 63
           +K   +  D ETT LD     ++ I A +++D      + F+V L    +     ++K+H
Sbjct: 26  DKTEYVSLDCETTSLDPNRAELVTIAATKIIDNRIITSQPFEVRLR-APQSLDSGSVKIH 84

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I  + L D  S      E  DF   +    + ++ ++D   ++    R    PL    I
Sbjct: 85  RIRHQDLVDGISEKEALLELLDFIGNR--PLVGYHIRYDKKILDLACLRQLGFPLPNPLI 142

Query: 124 IDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +     +      N      L+++CK   + I  +  H AL D+   + V++++  G
Sbjct: 143 EVSQIYHDKLERHLPNAYFDLSLDAICKHLELPIQDK--HDALQDAISAALVFVRLTKG 199


>gi|117924351|ref|YP_864968.1| exonuclease, RNase T and DNA polymerase III [Magnetococcus sp.
           MC-1]
 gi|117608107|gb|ABK43562.1| Exonuclease, RNase T and DNA polymerase III [Magnetococcus sp.
           MC-1]
          Length = 230

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 17/179 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLH 63
             ++ +  D+ETTGLD     I+ +G V + +     +      + P G   S  +  +H
Sbjct: 40  RDVKFLALDLETTGLDPNKSEILSVGFVPVYNGRVVLSGCAHYLVQPEGA-ISHASAVVH 98

Query: 64  GITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPS 121
           GITD+         S +          +    +AH+   ++ FI    QR+  + PL P+
Sbjct: 99  GITDDHAEAYGEPLSVVLPRVLKAL--KGHVLLAHHCPIELNFIRKACQRLYGEMPLIPA 156

Query: 122 RIIDTLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             +DTL I R+               L +   RY +     + H AL+D+    ++++ 
Sbjct: 157 --VDTLVIERQIMDRRSGTYEPGALRLFTARTRYNLP--RYAAHDALMDAIACGELFLA 211


>gi|302554973|ref|ZP_07307315.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
 gi|302472591|gb|EFL35684.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
          Length = 238

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 17/171 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   I FD+ETTG D +  RI+    +E+     + R    +L   G     +A+ 
Sbjct: 1   MGWHRELLIGFDLETTGTDPREARIVTGAVIEVRGGEPSGRR--EWLADPGVPIPEDAVA 58

Query: 62  LHGITDEFLKD----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGI+ E            +   +E    + +     +A+NA FD+  ++AEL+R     
Sbjct: 59  VHGISTERAAAEGRPADQVADAMAEVLTSYWKTGVPVVAYNAAFDLTLLSAELRRHGLPS 118

Query: 118 L-------DPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
           L       DP+ +ID  T+     ++   + +L ++C  YG+ +   S H 
Sbjct: 119 LRDRLGGVDPAPVIDPYTIDRWVDRYRRGKRNLEAVCAEYGVVLD--SAHD 167


>gi|269103713|ref|ZP_06156410.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163611|gb|EEZ42107.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 237

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 80/178 (44%), Gaps = 11/178 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
            +++  +V D ETTG D + D I+ +G V +        T  ++ +  + +K  PE   +
Sbjct: 47  LSQLEYLVLDFETTGFDPEQDDILSVGFVTISQQRIDLSTATELLIKDSQQKVKPETAII 106

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           + IT E L          +  ++    +    +AH A  +  F+N  L    + P  P  
Sbjct: 107 NHITTEKLAHGVELDCAMAALFNAM--KGKIMVAHGAMIEQRFLNHYLATRYQLPPLPII 164

Query: 123 IIDTLS------IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +DTL+      I R++  ++   L  + +R+G+       HGA++D+   +++ + +
Sbjct: 165 WLDTLTIEKSLSIHRQQLKANDYRLAQIRQRHGLP--AYPAHGAVIDAIATAELLLVL 220


>gi|213965286|ref|ZP_03393483.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           amycolatum SK46]
 gi|213952138|gb|EEB63523.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           amycolatum SK46]
          Length = 545

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 11/179 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEALKLHGIT 66
              FD+ET   +     II++G V ++   K    +     P           + +HGIT
Sbjct: 166 FAAFDVETA--NEDTGSIIQLG-VAVVRGGKVTERYSWMCRPPKGLEYFDEANVAIHGIT 222

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +  +PSF    ++F D   + +    AHNA+FD   ++    R    P        T
Sbjct: 223 AADVAGEPSFPEQLAKFVDVVGDLDVV--AHNARFDFTALSRAC-RAEGIPAPKLNFACT 279

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
              AR+      N  L +L +  G ++ +   H A  D+   ++V + +M      +  
Sbjct: 280 YMWARQMQLGLPNLKLPTLAEAAGASLENH--HDATADAVACAEVALWLMEQQRATSVA 336


>gi|146096896|ref|XP_001467969.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania
           infantum JPCM5]
 gi|134072335|emb|CAM71041.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania
           infantum JPCM5]
          Length = 188

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 31/175 (17%)

Query: 30  GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFN 88
           GA+E L +++  R F  ++ P + R+ S  A  +HGIT E ++    ++   SE   +  
Sbjct: 3   GAIEGL-WTRGGRVFHRYVRPSDPRRISAAAAAVHGITWETVQHCSPWTVAASELVAYMT 61

Query: 89  EQNA------------------------EWIAHNAKFDVGFINAELQRINKDPLDPSRI- 123
              A                          +AHNA FD  F+   L+R         +  
Sbjct: 62  LVGADAPVSASAQLEAAQLGGDRAVRLPPLVAHNASFDARFLEHHLRRCGYQIFWHPQYP 121

Query: 124 -IDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSK--HGALLDSHLLSDVYIKM 174
              T   A+  +P   N+L++LC    I   + R    HGAL D+ L + ++++M
Sbjct: 122 LTCTRQWAQVAYPHLANNLDALCAFLSIDGAADRVANGHGALTDATLTALLFLQM 176


>gi|154246978|ref|YP_001417936.1| DNA polymerase III subunit epsilon [Xanthobacter autotrophicus Py2]
 gi|154161063|gb|ABS68279.1| Exonuclease RNase T and DNA polymerase III [Xanthobacter
           autotrophicus Py2]
          Length = 298

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 89/245 (36%), Gaps = 41/245 (16%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL---LDYSK--TNRTFQVFLCPNGRKNSPEALKLHGI 65
           V D+ETTGLD + D IIE+        LD +      +FQ    P+     PE   + GI
Sbjct: 46  VVDVETTGLDPQRDEIIELAMTPFSYGLDGTIFSVGDSFQGLRQPS-EPILPEITAITGI 104

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+E +  +    ++ + F        + +IAHNA FD  F          D         
Sbjct: 105 TNEMVAGQIIDPAVVATFAA----PASLFIAHNAAFDRRFFERFS-----DVFSTKPWAC 155

Query: 126 TLS---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM------MV 176
           +LS    A      ++  L  L +  G       +H A+ D     ++ + M      + 
Sbjct: 156 SLSQIDWAAEGFQGAK--LAYLAQAAGFFYD---RHRAMHDCLATIEL-LAMQLPRSGVT 209

Query: 177 GGSQINFGFKTNEDRFFKE-----------EKKTVPNISLLKRDKPLFTRITKEELDEHD 225
           G S++  G +T   R + E            +    N       +  +  + + + +   
Sbjct: 210 GLSRLLDGARTVSWRIWAENSPFDLKDVLKARGYRWNGDPGPHPRAWYIDVPEAQREAEV 269

Query: 226 KTIQT 230
           + + T
Sbjct: 270 RFLST 274


>gi|294795062|ref|ZP_06760197.1| exonuclease [Veillonella sp. 3_1_44]
 gi|294454424|gb|EFG22798.1| exonuclease [Veillonella sp. 3_1_44]
          Length = 209

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 71/166 (42%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +   +    +  + + D   T + +   + P       E +++HGI  +
Sbjct: 4   FVALDFETA--NKFKNSACSLAVITVKDGQITKKAYS-LIKPPFMSFDDECIEIHGIQPK 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  + +F  +++  ++  + +    +AHNAKFD+  + A L    K P        T+ 
Sbjct: 61  DVLHEKTFDELWNAIYE-NHLKGNIMVAHNAKFDMNVLRATLD-YYKIPWPELDYACTVK 118

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++R   P    + LN++    G+   H   H AL D+   + V ++
Sbjct: 119 LSRAVWPDLVNHKLNTMAAYIGVEFKH---HYALDDAETCAKVVLE 161


>gi|217980123|ref|YP_002364173.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
 gi|217508294|gb|ACK55079.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
          Length = 201

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 27/181 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGL   +  ++E+  ++       +      + P+G     EA  +HGITD  
Sbjct: 23  LILDTETTGL-GDDAEVVELAVIDCAGAVLLD----TLVRPSG-PVPAEAAAIHGITDAM 76

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-------LDPSR 122
           L   P++S + + F      +  + + +N +FDV  I+   +R            LDP R
Sbjct: 77  LAGAPTWSELHARFCGLV--EGRQVVIYNHEFDVRVISQTARRYGLQAPQGFDQVLDPGR 134

Query: 123 IIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           I   +  A  +     +          L++  ++ G+T+ +   H AL D  +   V   
Sbjct: 135 IHCAMQ-AYAEFRGEWSAEKGQYRWQKLSAAAQQQGVTVEN--AHRALGDCLMTLGVVRA 191

Query: 174 M 174
           M
Sbjct: 192 M 192


>gi|153834777|ref|ZP_01987444.1| gp41 [Vibrio harveyi HY01]
 gi|148868812|gb|EDL67880.1| gp41 [Vibrio harveyi HY01]
          Length = 218

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 68/185 (36%), Gaps = 25/185 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M + +    I+ D ETTGL S +  I+E  A+               + P       +A 
Sbjct: 12  MKKLSTENAIIIDTETTGLGS-DAEIVEFTAICADSGKVIVNE---LVKPTC-SIPADAT 66

Query: 61  KLHGITDEFLKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----- 114
            +HGIT+E +KD P F  +FS  F    N +    I +N+ FD   I   L +       
Sbjct: 67  AIHGITNEDVKDAPDFHLVFSNHFLPLLNGR--PIIIYNSDFDTRLIIQSLDKHCNAAYV 124

Query: 115 ---KDPLDPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALL 162
               D      I     +   +     N          L++ C +  + +S  + H AL 
Sbjct: 125 QSVHDLFFKFCIPQCAMLWYAEFFGVWNEHHEDYKWQSLSNACAQQSVDVSDLTAHRALA 184

Query: 163 DSHLL 167
           D  + 
Sbjct: 185 DCEMT 189


>gi|85711670|ref|ZP_01042727.1| DNA polymerase III subunit epsilon [Idiomarina baltica OS145]
 gi|85694530|gb|EAQ32471.1| DNA polymerase III subunit epsilon [Idiomarina baltica OS145]
          Length = 244

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 70/180 (38%), Gaps = 18/180 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGLD + + I+ I  V +          + ++    +  + E++ +HGIT   
Sbjct: 55  VAVDFETTGLDCQRNSIVSIAVVPMSAQRIFMSQARQWVVKPRQDLTDESVVIHGITHSD 114

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++  P   +I  E  D        W+ H    +  F+   +     + +    +IDT++I
Sbjct: 115 IQSAPDIEAILPELLDLVA--GKIWVVHYNGIERPFLQKAMDARFNEHIH-FPVIDTMAI 171

Query: 130 ARRKHPSSRN-------------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             R H   R+              L    +RY +     + H AL D+   +++    + 
Sbjct: 172 EARFHRQRRSFWSRLMGKRPLSIRLADSRERYNLPFY--APHDALTDALACAELLQAQIR 229


>gi|299146645|ref|ZP_07039713.1| exonuclease [Bacteroides sp. 3_1_23]
 gi|298517136|gb|EFI41017.1| exonuclease [Bacteroides sp. 3_1_23]
          Length = 198

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 68/169 (40%), Gaps = 10/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + K   +  +G V + +   TN+ +   + P     +     +HG+T +
Sbjct: 4   FAAIDFETA--NGKRTSVCSVGVVIVREGKITNKIY-RLIRPRPNYYTQWTTAVHGLTYD 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              +   F  +++E     +      +AHN+ FD G + A  +  +       +   T  
Sbjct: 61  DTMEADEFPEVWAEIKPLID--GLPLVAHNSPFDEGCLRAVHELYDM-TYPDYKFYCTCR 117

Query: 129 IARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +R+        + L+++ +R G  + +   H AL D+   + + + ++
Sbjct: 118 TSRKVFGKDLPNHQLHTVAERCGYHLENH--HHALADAEACAQIALLII 164


>gi|295689870|ref|YP_003593563.1| exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC
           21756]
 gi|295431773|gb|ADG10945.1| Exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC
           21756]
          Length = 298

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 77/241 (31%), Gaps = 31/241 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL---DYSK--TNRTFQVFLCPNGRKNSPEALKLHG 64
           IV D+ETTGLD   D IIE G V                F     P+G    P+  KL G
Sbjct: 45  IVLDLETTGLDPAKDEIIEFGLVPFTYDAGGRIVAVGEPFSRLRQPSG-PIPPDVTKLTG 103

Query: 65  ITDEFLKDKPSFSSIFS--EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           +TD  +        +    E   F +   A  IAHNA FD  F  A      + P   S 
Sbjct: 104 LTDAMVAG-----QVVDPAEVATFIDGA-ALIIAHNAGFDRRFAEAFCPAFAQKPWACSY 157

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYG-ITISHRSKHGALLDSHLLS--------DVYIK 173
                 I  + H      L  L   YG     HR+ H  L    +L+          +  
Sbjct: 158 T----QIDWQAHGHESGKLAFLACAYGFFHDGHRAHHDCLATLEILASPLGATDGSAFQT 213

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNIS----LLKRDKPLFTRITKEELDEHDKTIQ 229
           ++    + +         F  ++                 +  +  + + + D     +Q
Sbjct: 214 LLATARRASVRIWAENSPFDLKDVLKARGYRWSGDPGPSPRAWWIDVDEADKDAELAFLQ 273

Query: 230 T 230
            
Sbjct: 274 A 274


>gi|91228447|ref|ZP_01262371.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|269966808|ref|ZP_06180881.1| putative DNA polymerase III, epsilon subunit [Vibrio alginolyticus
           40B]
 gi|91187982|gb|EAS74290.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|269828475|gb|EEZ82736.1| putative DNA polymerase III, epsilon subunit [Vibrio alginolyticus
           40B]
          Length = 209

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 11/179 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLH 63
           +K   +  D ETT LD     ++ I A +++D      + F+V L    +     ++K+H
Sbjct: 26  DKTEYVSLDCETTSLDPNRAELVTIAATKIIDNRIITSQPFEVRLR-APQSLDSGSVKIH 84

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I  + L D  S      E  DF   +    + ++ ++D   ++    R    PL    I
Sbjct: 85  RIRHQDLVDGISEKEALLELLDFIGNR--PLVGYHIRYDKKILDLACLRQLGFPLPNPLI 142

Query: 124 IDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +     +      N      L+++CK   + I  +  H AL D+   + V++++  G
Sbjct: 143 EVSQIYHDKLERHLPNAYFDLSLDAICKHLELPIQDK--HDALQDAISAALVFVRLTKG 199


>gi|226355514|ref|YP_002785254.1| ATP-dependent DNA helicase [Deinococcus deserti VCD115]
 gi|226317504|gb|ACO45500.1| putative ATP-dependent DNA helicase [Deinococcus deserti VCD115]
          Length = 1683

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 89/229 (38%), Gaps = 24/229 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K     ++ D ETT +D    R++E+ AV + D    + T Q+ +  +G +   E  
Sbjct: 1   MPTKLVTSYVILDTETTSVDRAEARLLEVAAVRVEDGRICD-TLQLLV--SGERIPREVA 57

Query: 61  KLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPL 118
           +L GI  E L +D      +  +   F    +   + HNA+ FDV  +    +  +    
Sbjct: 58  ELTGIRQEELDRDGQPLPDVLKQVLAFMG--DLPVVGHNAQGFDVPLLKRLCREQSLKFQ 115

Query: 119 DPSRIIDTLSIARRKH-----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            P  + DTL +A         P     L  L  R+   + H   H  L D    S +   
Sbjct: 116 VPF-VFDTLLLAPLAFAAVVPPVEGYGLEGLHARFCGDV-HDDAHRTLADCAATSRLLAY 173

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
           M+     +       ED+        VP ++L  + +     ITK EL+
Sbjct: 174 MVERLRAL------PEDQKALISALPVPELALAFQPR----SITKAELE 212


>gi|160882895|ref|ZP_02063898.1| hypothetical protein BACOVA_00857 [Bacteroides ovatus ATCC 8483]
 gi|260173743|ref|ZP_05760155.1| putative DNA polymerase III epsilon chain [Bacteroides sp. D2]
 gi|315922007|ref|ZP_07918247.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156111759|gb|EDO13504.1| hypothetical protein BACOVA_00857 [Bacteroides ovatus ATCC 8483]
 gi|313695882|gb|EFS32717.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 198

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 68/169 (40%), Gaps = 10/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + K   +  +G V + +   TN+ +   + P     +     +HG+T +
Sbjct: 4   FAAIDFETA--NGKRTSVCSVGVVIVREGKITNKIY-RLIRPRPNYYTQWTTAVHGLTYD 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              +   F  +++E     +      +AHN+ FD G + A  +  +       +   T  
Sbjct: 61  DTMEADEFPEVWAEIKPLID--GLPLVAHNSPFDEGCLRAVHELYDM-TYPDYKFYCTCR 117

Query: 129 IARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +R+        + L+++ +R G  + +   H AL D+   + + + ++
Sbjct: 118 TSRKVFGKDLPNHQLHTVAERCGYHLENH--HHALADAEACAQIALLII 164


>gi|104774090|ref|YP_619070.1| putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103423171|emb|CAI97964.1| Putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 261

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 26/177 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTG      +II+IGA+++ D  +T   F  ++ P   K +     L GI++ 
Sbjct: 8   YTVFDLETTG-----KKIIQIGALKVRDD-QTVAKFSTYVNP-LEKINDYVSHLTGISNY 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
                P    +  +F DF  +     + HN   FD   +       N  P+  +  +DTL
Sbjct: 61  QTDAAPLIDEVMPDFLDFVGDD--TLVGHNILSFDCNVLAD-----NGYPVA-NPKLDTL 112

Query: 128 SIA-----RRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +A     R     P     L++L + YGI I   + H A+ D    + VY K++ G
Sbjct: 113 LLANSYKKRGLFADPIPNVRLSTLKEYYGINI---NFHIAISDCITNNIVYQKLLDG 166


>gi|167624484|ref|YP_001674778.1| exonuclease RNase T and DNA polymerase III [Shewanella halifaxensis
           HAW-EB4]
 gi|167354506|gb|ABZ77119.1| Exonuclease RNase T and DNA polymerase III [Shewanella halifaxensis
           HAW-EB4]
          Length = 205

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 85/182 (46%), Gaps = 15/182 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKL 62
            +++  +  D+E TGLD + D+I+ IG + + +   +  ++  + +  +G  +  ++  +
Sbjct: 17  LSQLPLMAVDLEMTGLDCQFDQILSIGLIPIHNGLLQVAKSQHLLVSIDG--SVGDSATI 74

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI D  L    S     + F +    +    +AH+A  D+ F+  E+QR          
Sbjct: 75  HGILDNQLTQAVSAKQAMAWFLE--QSKGHVLVAHHAPLDLCFLKTEIQRCYGQT-MQFV 131

Query: 123 IIDTLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            IDT+++ +++     +        L++  +RYG+ +   + H A +D+    ++ +  M
Sbjct: 132 AIDTMAVEKKRLLRQHDVIKEGTLRLDACRQRYGLPVY--TAHNAAVDALACGELLLAQM 189

Query: 176 VG 177
            G
Sbjct: 190 AG 191


>gi|17988635|ref|NP_541268.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           16M]
 gi|17984439|gb|AAL53532.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str.
           16M]
          Length = 272

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 87/240 (36%), Gaps = 31/240 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 14  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 73

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRII 124
           TDE +K +    +I  +  D    +    IAHNA FD  F+    +   NK      + I
Sbjct: 74  TDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLERLSIAFANKPWACSVKEI 129

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV----------YIKM 174
           D      R    ++  L  L    G +    + H A  D   L  V          + ++
Sbjct: 130 D---WTARGFEGTK--LGYLI---GQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAEL 181

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQT 230
           +    +           F  ++               R K  +T + ++EL+   + ++T
Sbjct: 182 LKASQRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYLRT 241


>gi|326774035|ref|ZP_08233317.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
 gi|326636174|gb|EGE37078.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
          Length = 259

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVE---LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           FD ETTG+D   DR++    V            ++   +L   G +    A  +HG+T E
Sbjct: 27  FDTETTGVDPSGDRLVTAALVWRAAPRADGVRPQSVATWLADPGVEIPEAAAAVHGVTTE 86

Query: 69  FLK-DKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLD----- 119
             + +  S + + +E  +      A     +A NA +D+  + AEL R     +      
Sbjct: 87  RARAEGRSVTEVLAEVSEHLVAAMAAGTPVVAFNASYDLTLMEAELARHGLPTMHSRLGR 146

Query: 120 ---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
              P      L  A  ++   +  L  LC+ YG+ +   + H A +D     DV   +  
Sbjct: 147 ELGPIADPLVLDRAVDRYRRGKRRLGDLCEVYGVRVD-EALHTAEVDVAATLDVLEALTA 205

Query: 177 GGSQIN-------FGFKTNEDRFFKEE-----KKTVPNISLLKRDKPLFTRIT 217
              Q++         F+    R + E       +  P+ +  +   PL    T
Sbjct: 206 AHPQLSELDPDELVAFQARAHRTWAESFNEWLARKNPSRTPAQTAWPLPDSPT 258


>gi|313893912|ref|ZP_07827478.1| putative DNA polymerase III, epsilon subunit [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313441476|gb|EFR59902.1| putative DNA polymerase III, epsilon subunit [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 209

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 71/166 (42%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +   +    +  + + D   T + +   + P       E +++HGI  +
Sbjct: 4   FVALDFETA--NKFKNSACSLAVITVKDGQITKKAYS-LIKPPFMSFDDECIEIHGIQPK 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  + +F  +++  ++  + +    +AHNAKFD+  + A L    K P        T+ 
Sbjct: 61  DVLHEKTFDQLWNAIYE-NHLKGNIMVAHNAKFDMNVLRATLD-YYKIPWPELDYACTVK 118

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++R   P    + LN++    G+   H   H AL D+   + + ++
Sbjct: 119 LSRAVWPDLVNHKLNTMAAYMGVEFKH---HYALDDAETCAKIVLE 161


>gi|318060902|ref|ZP_07979623.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
          Length = 239

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 30/229 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG D + DRI+   AV  LD S T    + +L   G +   EA  +HGI     +
Sbjct: 11  FDLETTGTDVEQDRIVT-AAVIRLDSSGTVAHTRTWLLDPGVEIPAEATAIHGIPTARAR 69

Query: 72  --DKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPL------DP 120
               P+  ++  E  +    +       +  NA++D+  ++ E +R     L      +P
Sbjct: 70  ADGAPARGAVA-EITEALAAELRAGTPLVVMNARYDLSLLDRECRRHGVPALAELLGAEP 128

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG- 177
           + +ID L + +   ++      L +LC  YG+ +   + H A  D+   + +  + +   
Sbjct: 129 APVIDPLVLDKHADRYRRGSRVLAALCAHYGVRLD--TAHDARSDALA-ATLLARSLGAH 185

Query: 178 -----------GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
                        ++       +    +E  +     ++++   P+  R
Sbjct: 186 HPTLGTLPPTDLHRLQIDAAARQSASLQEYLRRTKPDAVVEGAWPVIPR 234


>gi|289425017|ref|ZP_06426796.1| exonuclease [Propionibacterium acnes SK187]
 gi|289427636|ref|ZP_06429348.1| exonuclease [Propionibacterium acnes J165]
 gi|295131251|ref|YP_003581914.1| exonuclease [Propionibacterium acnes SK137]
 gi|289154716|gb|EFD03402.1| exonuclease [Propionibacterium acnes SK187]
 gi|289159127|gb|EFD07319.1| exonuclease [Propionibacterium acnes J165]
 gi|291376299|gb|ADE00154.1| exonuclease [Propionibacterium acnes SK137]
 gi|313763263|gb|EFS34627.1| exonuclease [Propionibacterium acnes HL013PA1]
 gi|313773241|gb|EFS39207.1| exonuclease [Propionibacterium acnes HL074PA1]
 gi|313793400|gb|EFS41458.1| exonuclease [Propionibacterium acnes HL110PA1]
 gi|313801125|gb|EFS42391.1| exonuclease [Propionibacterium acnes HL110PA2]
 gi|313810334|gb|EFS48050.1| exonuclease [Propionibacterium acnes HL083PA1]
 gi|313812157|gb|EFS49871.1| exonuclease [Propionibacterium acnes HL025PA1]
 gi|313814708|gb|EFS52422.1| exonuclease [Propionibacterium acnes HL059PA1]
 gi|313817876|gb|EFS55590.1| exonuclease [Propionibacterium acnes HL046PA2]
 gi|313819789|gb|EFS57503.1| exonuclease [Propionibacterium acnes HL036PA1]
 gi|313823447|gb|EFS61161.1| exonuclease [Propionibacterium acnes HL036PA2]
 gi|313824920|gb|EFS62634.1| exonuclease [Propionibacterium acnes HL063PA1]
 gi|313828254|gb|EFS65968.1| exonuclease [Propionibacterium acnes HL063PA2]
 gi|313830174|gb|EFS67888.1| exonuclease [Propionibacterium acnes HL007PA1]
 gi|313833097|gb|EFS70811.1| exonuclease [Propionibacterium acnes HL056PA1]
 gi|313838091|gb|EFS75805.1| exonuclease [Propionibacterium acnes HL086PA1]
 gi|314914476|gb|EFS78307.1| exonuclease [Propionibacterium acnes HL005PA4]
 gi|314917800|gb|EFS81631.1| exonuclease [Propionibacterium acnes HL050PA1]
 gi|314919473|gb|EFS83304.1| exonuclease [Propionibacterium acnes HL050PA3]
 gi|314925898|gb|EFS89729.1| exonuclease [Propionibacterium acnes HL036PA3]
 gi|314930232|gb|EFS94063.1| exonuclease [Propionibacterium acnes HL067PA1]
 gi|314957046|gb|EFT01152.1| exonuclease [Propionibacterium acnes HL027PA1]
 gi|314957661|gb|EFT01764.1| exonuclease [Propionibacterium acnes HL002PA1]
 gi|314960727|gb|EFT04828.1| exonuclease [Propionibacterium acnes HL002PA2]
 gi|314963399|gb|EFT07499.1| exonuclease [Propionibacterium acnes HL082PA1]
 gi|314968946|gb|EFT13044.1| exonuclease [Propionibacterium acnes HL037PA1]
 gi|314972968|gb|EFT17064.1| exonuclease [Propionibacterium acnes HL053PA1]
 gi|314975485|gb|EFT19580.1| exonuclease [Propionibacterium acnes HL045PA1]
 gi|314979437|gb|EFT23531.1| exonuclease [Propionibacterium acnes HL072PA2]
 gi|314984227|gb|EFT28319.1| exonuclease [Propionibacterium acnes HL005PA1]
 gi|314986027|gb|EFT30119.1| exonuclease [Propionibacterium acnes HL005PA2]
 gi|314988810|gb|EFT32901.1| exonuclease [Propionibacterium acnes HL005PA3]
 gi|315077249|gb|EFT49311.1| exonuclease [Propionibacterium acnes HL053PA2]
 gi|315079928|gb|EFT51904.1| exonuclease [Propionibacterium acnes HL078PA1]
 gi|315083258|gb|EFT55234.1| exonuclease [Propionibacterium acnes HL027PA2]
 gi|315086971|gb|EFT58947.1| exonuclease [Propionibacterium acnes HL002PA3]
 gi|315089896|gb|EFT61872.1| exonuclease [Propionibacterium acnes HL072PA1]
 gi|315096775|gb|EFT68751.1| exonuclease [Propionibacterium acnes HL038PA1]
 gi|315097845|gb|EFT69821.1| exonuclease [Propionibacterium acnes HL059PA2]
 gi|315100750|gb|EFT72726.1| exonuclease [Propionibacterium acnes HL046PA1]
 gi|315109298|gb|EFT81274.1| exonuclease [Propionibacterium acnes HL030PA2]
 gi|327325340|gb|EGE67145.1| putative DNA polymerase III epsilon subunit [Propionibacterium
           acnes HL096PA2]
 gi|327325497|gb|EGE67300.1| putative DNA polymerase III epsilon subunit [Propionibacterium
           acnes HL096PA3]
 gi|327443771|gb|EGE90425.1| exonuclease [Propionibacterium acnes HL043PA1]
 gi|327449167|gb|EGE95821.1| exonuclease [Propionibacterium acnes HL043PA2]
 gi|327449503|gb|EGE96157.1| exonuclease [Propionibacterium acnes HL013PA2]
 gi|327451349|gb|EGE98003.1| exonuclease [Propionibacterium acnes HL087PA3]
 gi|327451673|gb|EGE98327.1| exonuclease [Propionibacterium acnes HL092PA1]
 gi|327452136|gb|EGE98790.1| exonuclease [Propionibacterium acnes HL083PA2]
 gi|328752391|gb|EGF66007.1| exonuclease [Propionibacterium acnes HL087PA1]
 gi|328755047|gb|EGF68663.1| exonuclease [Propionibacterium acnes HL025PA2]
 gi|328755908|gb|EGF69524.1| exonuclease [Propionibacterium acnes HL020PA1]
 gi|328761056|gb|EGF74607.1| putative DNA polymerase III epsilon subunit [Propionibacterium
           acnes HL099PA1]
 gi|332676124|gb|AEE72940.1| putative DNA polymerase III epsilon subunit [Propionibacterium
           acnes 266]
          Length = 210

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 15/171 (8%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  D ET     G+ +      ++  V++LD    +R     + P    +S E   LHG
Sbjct: 43  FVAVDFETANRMGGVSA-----CQVAMVKVLDGQIVDR-LNTLIRPPKGWDSFEFTYLHG 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+   + D P + +I      F +   A   AHNA FD        +      L P+   
Sbjct: 97  ISAADVADAPGWINIADTVSHFVD--GATVYAHNAAFDSRVWRQLDEHFGTTTL-PAPFF 153

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +   A+R  P      L ++           + H A  D+   + +  ++
Sbjct: 154 CSYRTAQRLIPGLPNYKLPTVL-HACAPNYQLNHHRADSDAEACALIVCEL 203


>gi|170738412|ref|YP_001767067.1| DNA polymerase III subunit epsilon [Methylobacterium sp. 4-46]
 gi|168192686|gb|ACA14633.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 223

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 77/170 (45%), Gaps = 8/170 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGLD + D I+ + A+ +      T+ + +  +  + R +SPEA+K+H + + 
Sbjct: 32  VALDCETTGLDPRRDEIVAVAAIRIRGDRILTSESLRATVR-SDRPSSPEAIKVHRLLNA 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127
            +++     ++      F   +    + +  +FDV  ++  ++R       +P   + +L
Sbjct: 91  EIREAEPLDAVLPALLRFIGGR--PIVGYYTEFDVRMLDKSVRRQFGIRLPNPRIDVSSL 148

Query: 128 SIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             A +   +      DL+       + +    +H A  D+ + + +Y+++
Sbjct: 149 YHAAKYRDAPDYVKIDLSFARILEDLGLPALPQHDAFNDALMTAMIYLQL 198


>gi|254720591|ref|ZP_05182402.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|265985632|ref|ZP_06098367.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13]
 gi|306838555|ref|ZP_07471392.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653]
 gi|264664224|gb|EEZ34485.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13]
 gi|306406341|gb|EFM62583.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653]
          Length = 332

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 87/240 (36%), Gaps = 31/240 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRII 124
           TDE +K +    +I  +  D   +     IAHNA FD  F+    +   NK      + I
Sbjct: 134 TDEMVKGR----TIPRDELDALIDGADIIIAHNAGFDRPFLERFSIAFANKPWACSVKEI 189

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV----------YIKM 174
           D      R    ++  L  L    G +    + H A  D   L  V          + ++
Sbjct: 190 D---WTARGFEGTK--LGYLI---GQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAEL 241

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQT 230
           +    +           F  ++               R K  +T + ++EL+   + ++T
Sbjct: 242 LKASQRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYLRT 301


>gi|90412153|ref|ZP_01220159.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
 gi|90326877|gb|EAS43262.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
          Length = 238

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 27/201 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
              +++  +  D ETTGL+ K D II IG V   L+    NR     + P  +K + +++
Sbjct: 41  TPLDEIEFVAMDFETTGLNVKKDGIITIGLVPFTLNRVYINRAQHWIVRP-RQKLNEQSV 99

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +H IT   + D P  S +          +    + H  + +  F++  L+   K+ ++ 
Sbjct: 100 VIHNITHNDILDAPDLSEVIEPVLAALAGR--VVVVHYRRIEREFLDRALKDRIKEGIE- 156

Query: 121 SRIIDTL----SIARRKHPSSRND----------LNSLCKRYGITISHRSKHGALLDSHL 166
             +IDTL     I +R +    N           L    KRYG+     + H AL D+  
Sbjct: 157 FPVIDTLDLEAHIQQRLNGGFWNKLKGKKPQSVRLAQARKRYGLP--AYTPHHALTDAIA 214

Query: 167 LSDVYIKMMVGGSQINFGFKT 187
            +++        +QI + +  
Sbjct: 215 TAELL------QAQIAYHYDA 229


>gi|332878163|ref|ZP_08445892.1| DNA polymerase III, alpha subunit [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683901|gb|EGJ56769.1| DNA polymerase III, alpha subunit [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 1486

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 97/257 (37%), Gaps = 34/257 (13%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL    +          R ++I       +          + P+G     +
Sbjct: 2   YLIFDTETTGLPRNYNAPISDSNNWPRAVQIAWQLHDQWGALIEHQDFLIAPDGFDIPYD 61

Query: 59  ALKLHGITDEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           A K+HGI+   L +K     + +F+ F +  ++     +  N  FD+  + AE  R   +
Sbjct: 62  AEKVHGIST-LLAEKQGVPIAEVFAAFNEALSKAQ-YVVGQNIGFDINIMGAEFYRYGVE 119

Query: 117 -PLDPSRIIDTLSIARRKH------PSSRNDLNSLCK----RYGITISHRSKHGALLDSH 165
            PLD   +IDT + A             +    SL +     +G+  +    H A  D  
Sbjct: 120 SPLDKLPVIDTCTEATANLCKIEGGRGGKYKFPSLTELHSFLFGVPFA--EAHNATADVE 177

Query: 166 LLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP-------NISLLKRDKPLFTRITK 218
             +  + +++  G     G  + E     +   + P       +++L +  + L ++ + 
Sbjct: 178 ATARCFFELIRRGEGFKEGTFSREYIENFQAHHSSPIGLIGLKHVNLKEASEALRSKGST 237

Query: 219 EELDEHDKTIQTLGKNA 235
            E+   ++ I  L   A
Sbjct: 238 PEITASEEEIALLETAA 254


>gi|329964271|ref|ZP_08301372.1| exonuclease [Bacteroides fluxus YIT 12057]
 gi|328525576|gb|EGF52619.1| exonuclease [Bacteroides fluxus YIT 12057]
          Length = 168

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 10/164 (6%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR     D ET   + +   +  +G V + +   T+ ++   + P     +    ++HG+
Sbjct: 1   MRNFAAIDFETA--NEQRCSVCSVGVVIVKEGEITD-SYYSLIRPEPEYYTYWTTRVHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T       P F  ++ E       +    +AHN  FD   + A  +  + D  D      
Sbjct: 58  TLADTAGAPVFPDVWREIAPRI--EGLPLVAHNKAFDESCLKAVFRTYSMDYPDYD-FYC 114

Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           TL  +RR         L+++    G  +     H AL D+   +
Sbjct: 115 TLQASRRVIKGLPDYQLHTVAACCGYKLE--RHHNALADAEACA 156


>gi|77359544|ref|YP_339119.1| DNA polymerase [Pseudoalteromonas haloplanktis TAC125]
 gi|76874455|emb|CAI85676.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 207

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 13/175 (7%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K R +V D+E TGLD+K   I+ +  V + +        Q  +    +    ++   HGI
Sbjct: 22  KQRYLVIDLELTGLDAKQHEIVSLAWVVIENQCIKMSQSQHLINKEVKNL-AQSPVYHGI 80

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            ++ +    S  SI     + FN  +   + HNA  D GF+   L+  N     P  I+ 
Sbjct: 81  NNDNVAAGQSLHSILEHLSEHFN--DCILVFHNAMLDWGFLKPALKNANITT-RPKLILC 137

Query: 126 TLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           TL I +++              LN    RY +   H   H AL D+   +++++ 
Sbjct: 138 TLQIEKKRLQHQGVEIKQDDLTLNECRNRYELPSYH--CHHALTDAQATAELFLA 190


>gi|290956499|ref|YP_003487681.1| DNA exonuclease [Streptomyces scabiei 87.22]
 gi|260646025|emb|CBG69116.1| putative DNA exonuclease [Streptomyces scabiei 87.22]
          Length = 239

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 14/164 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   I FD+ETTG D +  RI+    +E+ D  +       +L   G +   EA+ 
Sbjct: 1   MGWHRQLLIGFDLETTGTDPREARIVTGAVIEVRDGERIGHR--EWLADPGVEIPEEAVA 58

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGIT+   + +      +     D            +A+NA FD+  ++AEL+R     
Sbjct: 59  VHGITNARAVAEGRPADRVADAIADVLVSYWRTGVPVVAYNAAFDLSLLSAELRRHALPS 118

Query: 118 L------DPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITIS 153
           L      DP+ +ID  T+  +  ++   + +L ++C  YG+ + 
Sbjct: 119 LRDRLGTDPAPVIDPYTIDRSVDRYRRGKRNLEAVCGEYGVALD 162


>gi|153001188|ref|YP_001366869.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS185]
 gi|151365806|gb|ABS08806.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS185]
          Length = 228

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 18/194 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60
           +  ++   +  D+E TGL+ + D+I+ IG V +        R  Q  +    R +  ++ 
Sbjct: 35  MPLSEAPLVAMDLEMTGLNPQQDQILSIGLVPIERGEIPLARAEQKLV--QIRGSVGQSA 92

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI D  L    +  +    F +         +AH+A  D  F+  +L  I    L  
Sbjct: 93  TIHGILDNHLVQAVTIEAAMGWFIN--QTYGRVLVAHHAPLDCRFLQQDLLAIYHQALIL 150

Query: 121 SRIIDTLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI- 172
              IDTL + R +     +        L +  +RYG+ I   + H AL D+    ++ + 
Sbjct: 151 -PAIDTLMLERHRLLREHSVIKEGSLRLGACRERYGLPIY--TAHSALTDALACGELLLA 207

Query: 173 --KMMVGGSQINFG 184
               M G  Q+   
Sbjct: 208 QMAAMGGAGQLTVA 221


>gi|294853961|ref|ZP_06794633.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
 gi|294819616|gb|EFG36616.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
          Length = 332

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 84/239 (35%), Gaps = 29/239 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +K +    +I  +  D    +    IAHNA FD  F+    +R++    +      
Sbjct: 134 TDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFL----ERLSIAFANKPWACS 185

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV----------YIKMM 175
              I           L  L    G +    + H A  D   L  V          + +++
Sbjct: 186 VKEIDWTVRGFEGTKLGYLI---GQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAELL 242

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQT 230
               +           F  ++               R K  +T + ++EL+   + ++T
Sbjct: 243 KASQRARMRIYAENSPFEMKDHLKARGYRWSDGKDGRPKSWWTEVGEDELEAELEYLRT 301


>gi|120553208|ref|YP_957559.1| DNA polymerase III subunit epsilon [Marinobacter aquaeolei VT8]
 gi|120323057|gb|ABM17372.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
          Length = 240

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 74/182 (40%), Gaps = 21/182 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL++    I+ IG V   L   +  + +   + P        ++ +HGIT  
Sbjct: 51  VALDFETTGLEADQHSIVSIGLVPFTLTGIQLGQCWHQVVRP-RLPLHKTSVTIHGITHS 109

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P    +    ++  N +    + H    +  F+N  LQ    + L    +IDT++
Sbjct: 110 EIENAPDLEDVLDPLFEHLNGR--IPVVHYRNIERPFLNTALQWRLNEQL-RFPVIDTMA 166

Query: 129 IARRKHPSSRND--------------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           I    HP+                  L     RYG+   H + H AL+D+   +++    
Sbjct: 167 IEAHLHPNRNPSRWQQLMGKKPISIRLADSRLRYGLP--HYASHNALIDAIATAELLQAQ 224

Query: 175 MV 176
           ++
Sbjct: 225 VL 226


>gi|23500730|ref|NP_700170.1| DNA polymerase III subunit epsilon [Brucella suis 1330]
 gi|161621054|ref|YP_001594940.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365]
 gi|254703325|ref|ZP_05165153.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|260567746|ref|ZP_05838215.1| exonuclease [Brucella suis bv. 4 str. 40]
 gi|261753952|ref|ZP_05997661.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
 gi|23464383|gb|AAN34175.1| exonuclease, putative [Brucella suis 1330]
 gi|161337865|gb|ABX64169.1| Exonuclease RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|260154411|gb|EEW89492.1| exonuclease [Brucella suis bv. 4 str. 40]
 gi|261743705|gb|EEY31631.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
          Length = 332

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 87/240 (36%), Gaps = 31/240 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRII 124
           TDE +K +    +I  +  D    +    IAHNA FD  F+    +   NK      + I
Sbjct: 134 TDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLERLSIAFANKPWACSVKEI 189

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV----------YIKM 174
           D      R    ++  L  L    G +    + H A  D   L  V          + ++
Sbjct: 190 D---WTARGFEGTK--LGYLI---GQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAEL 241

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQT 230
           +    +           F  ++               R K  +T + ++EL+   + ++T
Sbjct: 242 LKASQRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYLRT 301


>gi|27383194|ref|NP_774723.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27356368|dbj|BAC53348.1| bll8083 [Bradyrhizobium japonicum USDA 110]
          Length = 304

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 64/198 (32%), Gaps = 15/198 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL---LDYSK--TNRTFQVFLCPNGRKNSPEALKL 62
           R +  D+ETTGLD   D I+EI  V      D      + +F  F  P GR   PE   +
Sbjct: 46  RAVFIDLETTGLDPVADEIVEIAMVPFDYSDDGRIFAVHESFARFRDP-GRPIPPEVSAM 104

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GITD  +    +      E   F  +  A  +AHN  FD  F           P   S 
Sbjct: 105 TGITDAMVAGA-AIEPA--EIEAFLGDTAALVVAHNCSFDRRFAERFCPAFAHLPWACSW 161

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
                        +    L + C  +         H A+ D     ++  + +    Q  
Sbjct: 162 AEIPWREEGFVDGTKLVHLAAACGFF------HEGHRAVHDCLAGIELLSRPLPRSGQRA 215

Query: 183 FGFKTNEDRFFKEEKKTV 200
                +  R  +   +  
Sbjct: 216 LAVLLSSARAPRWRVRAA 233


>gi|255034947|ref|YP_003085568.1| Exonuclease RNase T and DNA polymerase III [Dyadobacter fermentans
           DSM 18053]
 gi|254947703|gb|ACT92403.1| Exonuclease RNase T and DNA polymerase III [Dyadobacter fermentans
           DSM 18053]
          Length = 195

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 19/183 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGI 65
           M  +V DIE TG +   + II+IGA    D  ++  T+   + P   +  S ++ ++HG+
Sbjct: 1   MSFLVLDIEMTGPEPGWNEIIQIGAEFFDDNWRSLGTYLQNVYPENEEAFSVKSEEVHGL 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNA--------EWIAHNAKFDVGFINAELQRINKDP 117
           + + L+D P    +  EF  +  + NA             +   D+ F+    +      
Sbjct: 61  SLDDLEDAPMIYDVLPEFEKWIKKLNAGKPSLANVVICGQSVINDINFLRFAYRNEKMKW 120

Query: 118 LDPSRIIDTLSIARRKHP-SSRN--------DLNSLCKRYGITISHRSKHGALLDSHLLS 168
              ++ +D  +++        +N         L S+   +G      + H AL D+ L +
Sbjct: 121 GFSNKQLDLHTVSYLFFQILEKNGKQVPRSLSLGSVASYFGFEREEET-HNALEDARLTA 179

Query: 169 DVY 171
             +
Sbjct: 180 KCF 182


>gi|237817379|ref|ZP_04596371.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A]
 gi|237788192|gb|EEP62408.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A]
          Length = 379

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 87/240 (36%), Gaps = 31/240 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 121 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 180

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRII 124
           TDE +K +    +I  +  D    +    IAHNA FD  F+    +   NK      + I
Sbjct: 181 TDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLERLSIAFANKPWACSVKEI 236

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV----------YIKM 174
           D      R    ++  L  L    G +    + H A  D   L  V          + ++
Sbjct: 237 D---WTARGFEGTK--LGYLI---GQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAEL 288

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQT 230
           +    +           F  ++               R K  +T + ++EL+   + ++T
Sbjct: 289 LKASQRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYLRT 348


>gi|225629458|ref|ZP_03787491.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo]
 gi|225615954|gb|EEH13003.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo]
          Length = 379

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 87/240 (36%), Gaps = 31/240 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 121 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 180

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRII 124
           TDE +K +    +I  +  D    +    IAHNA FD  F+    +   NK      + I
Sbjct: 181 TDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLERLSIAFANKPWACSVKEI 236

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV----------YIKM 174
           D      R    ++  L  L    G +    + H A  D   L  V          + ++
Sbjct: 237 D---WTARGFEGTK--LGYLI---GQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAEL 288

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQT 230
           +    +           F  ++               R K  +T + ++EL+   + ++T
Sbjct: 289 LKASQRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYLRT 348


>gi|225686761|ref|YP_002734733.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457]
 gi|256262103|ref|ZP_05464635.1| exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|225642866|gb|ACO02779.1| Exonuclease RNase T and DNA polymerase III [Brucella melitensis
           ATCC 23457]
 gi|263091793|gb|EEZ16124.1| exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|326411169|gb|ADZ68233.1| DNA polymerase III subunit epsilon [Brucella melitensis M28]
 gi|326554460|gb|ADZ89099.1| DNA polymerase III subunit epsilon [Brucella melitensis M5-90]
          Length = 332

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 87/240 (36%), Gaps = 31/240 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRII 124
           TDE +K +    +I  +  D    +    IAHNA FD  F+    +   NK      + I
Sbjct: 134 TDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLERLSIAFANKPWACSVKEI 189

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV----------YIKM 174
           D      R    ++  L  L    G +    + H A  D   L  V          + ++
Sbjct: 190 D---WTARGFEGTK--LGYLI---GQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAEL 241

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQT 230
           +    +           F  ++               R K  +T + ++EL+   + ++T
Sbjct: 242 LKASQRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYLRT 301


>gi|154493796|ref|ZP_02033116.1| hypothetical protein PARMER_03139 [Parabacteroides merdae ATCC
           43184]
 gi|154086409|gb|EDN85454.1| hypothetical protein PARMER_03139 [Parabacteroides merdae ATCC
           43184]
          Length = 174

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 71/170 (41%), Gaps = 9/170 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R    D E    + K   I  IG V +++ +K   +  + + P     +     +HGIT 
Sbjct: 3   RFAAIDFEIA--NGKRSSICSIG-VAIIEDNKVIDSVYMLVRPYPNFYTRFTTAIHGITM 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +   D P F   ++        Q+   +AHN+ FD G + A  +  +       +   T 
Sbjct: 60  QDTIDSPDFEEAWTRIAGRL--QDIPLVAHNSSFDEGCLRAAHEAYDL-AYPKYQFYCTC 116

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            ++RR +P  + + L ++    G  +++   H A+ D++  + +   MM 
Sbjct: 117 RLSRRMYPFLANHQLQTVAAHCGYDLTYH--HHAMADAYACAHIAATMMR 164


>gi|149408370|ref|YP_001294473.1| hypothetical protein ORF056 [Pseudomonas phage F8]
 gi|219523927|ref|YP_002455988.1| hypothetical protein PB1_gp58 [Pseudomonas phage PB1]
 gi|190333523|gb|ACE73778.1| conserved hypothetical protein [Pseudomonas phage PB1]
          Length = 184

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 16/178 (8%)

Query: 7   MRKIVFDIETTGLD-------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MR  V+D ETTGL         K  RIIE   V     +  +     F+C  G       
Sbjct: 1   MRFAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGETILDEV--EFICNPGIVIEEII 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDP 117
            K+ G+ +E L   PSF     +  DFF++ +A  IAHN  FD   +  +L R  +  + 
Sbjct: 59  TKITGLKNEDLIKHPSFLDQRQKVRDFFSKADAN-IAHNLPFDKFMLTCDLARGKLGLEE 117

Query: 118 LD-PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++ PS  I T+  +       R  L  L + Y      +  H AL D  LL +V  +M
Sbjct: 118 VNFPSLDICTVEESAPLF-GHRMRLQHLYEHYCGPYVQK--HRALDDVRLLHEVCKRM 172


>gi|261419662|ref|YP_003253344.1| hypothetical protein GYMC61_2250 [Geobacillus sp. Y412MC61]
 gi|319766479|ref|YP_004131980.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y412MC52]
 gi|261376119|gb|ACX78862.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y412MC61]
 gi|317111345|gb|ADU93837.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y412MC52]
          Length = 242

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 11/193 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R   +  ++ D+ETTG   +  D I+ + A + +        +   + P  +        
Sbjct: 56  RLTDIPFVIIDMETTGFSPEQGDEILAMAAAKTV-GGVVTDAYMTLVKPE-KPIPEHISA 113

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GI  + +   P  +     F  F        I ++   D+ F+   L R  +      
Sbjct: 114 LTGIEAKDVVFAPPLAEALRTFVPFIAAG--VLIGYHIGHDLAFLRHALWRHYRQKWS-G 170

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           R +D L         S    +     YGI    R  H A  D   ++ ++  ++    Q 
Sbjct: 171 RFVD-LQPMMTLIGHSCPTFDDALACYGIRCPRR--HTADGDVEAMAKLWAILLDEFRQR 227

Query: 182 NFGFKTNEDRFFK 194
             G  T  D +  
Sbjct: 228 --GIDTLHDLYAA 238


>gi|256015766|ref|YP_003105775.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
 gi|255998426|gb|ACU50113.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
          Length = 332

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 87/240 (36%), Gaps = 31/240 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRII 124
           TDE +K +    +I  +  D    +    IAHNA FD  F+    +   NK      + I
Sbjct: 134 TDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLERLSIAFANKPWACSVKEI 189

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV----------YIKM 174
           D      R    ++  L  L    G +    + H A  D   L  V          + ++
Sbjct: 190 D---WTARGFEGTK--LGYLI---GQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAEL 241

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQT 230
           +    +           F  ++               R K  +T + ++EL+   + ++T
Sbjct: 242 LKASQRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYLRT 301


>gi|283457705|ref|YP_003362291.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa DY-18]
 gi|283133706|dbj|BAI64471.1| DNA polymerase III, epsilon subunit [Rothia mucilaginosa DY-18]
          Length = 231

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 84/220 (38%), Gaps = 13/220 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   N +R   FD+ETTG+D    RI+    + L       R  +    P G +    A 
Sbjct: 1   MTWMNGLR-ATFDLETTGVDVTTARIVTASLILLDPQGNVVRRGEWLADP-GVEIPAGAA 58

Query: 61  KLHGITDEFLKDKP-SFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINK- 115
            +HGIT E+ ++       +  E               IA NA +D   ++ E+ R N  
Sbjct: 59  AVHGITTEYAREHGRPAREVVWELAGAIGALNLDGVPIIAFNAAYDFSVLHHEMLRHNIA 118

Query: 116 -DPLDPSRIIDTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              L P  ++D   + +   P  R    L  L   YG+++ +   H +  D+     + +
Sbjct: 119 NGELPPGVVLDPYVLHKHVIPRKRGKRTLEVLAAEYGVSLEN--AHTSADDALAAERLLV 176

Query: 173 KMMVGGSQ-INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
           K+     + +N   +   ++  +   +   +     R +P
Sbjct: 177 KLTEQFPEVLNVDARQLHEQQIQWAAEQAASFQAWLRTQP 216


>gi|68500002|gb|AAY97945.1| hypothetical protein [Plasmid pMCBF1]
 gi|133711762|gb|ABO36582.1| hypothetical protein [uncultured bacterium pMCBF6]
          Length = 291

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 18/183 (9%)

Query: 4   KNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           K  M++ +V D ETTGLD    ++IEI  V+    +  N+     + P     S +A ++
Sbjct: 114 KQAMKEGVVLDTETTGLDGV-AQVIEIAIVDWNGKTLINQR----IRPTVA-ISVDAQRV 167

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPS 121
           HGI+ + L D P+++ I  E       +    + +NA +D   +    +     D LD  
Sbjct: 168 HGISMDDLADCPAWTDIAPEVRRVL--EGRPVVIYNASYDQRMLYQTAKSTAGLDDLDWI 225

Query: 122 RIIDT---LSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT   +++A R++ ++       L +   + GI     + H AL D+     +  KM
Sbjct: 226 INLDTHCAMTMAAREYGATNKYGTISLANAVIQAGIEW-QGAAHSALGDALTTLALARKM 284

Query: 175 MVG 177
           +  
Sbjct: 285 VGA 287


>gi|56419989|ref|YP_147307.1| hypothetical protein GK1454 [Geobacillus kaustophilus HTA426]
 gi|56379831|dbj|BAD75739.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 242

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 67/196 (34%), Gaps = 11/196 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R   +  ++ D+ETTG   +  D I+ + A + +        +   + P  +        
Sbjct: 56  RLTDIPFVIIDMETTGFSPEQGDEILAMAAAKTV-GGVVTDAYMTLVKPE-KPIPEHISA 113

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GI  + +   P  +     F  F        I ++   D+ F+   L R  +      
Sbjct: 114 LTGIEAKDVVFAPPLAEALRTFVPFIAAG--VLIGYHIGHDLAFLRHALWRHYRQKWS-G 170

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           R +D L         S    +     YGI    R  H A  D   ++ ++  ++    Q 
Sbjct: 171 RFLD-LQPMMTLIGHSCPTFDDALACYGIRCPRR--HTADGDVEAMAKLWAILLDEFRQR 227

Query: 182 NFGFKTNEDRFFKEEK 197
             G +T  D +    +
Sbjct: 228 --GIETLHDLYAALSR 241


>gi|254700203|ref|ZP_05162031.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261750696|ref|ZP_05994405.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5
           str. 513]
 gi|261740449|gb|EEY28375.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5
           str. 513]
          Length = 332

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 87/240 (36%), Gaps = 31/240 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRII 124
           TDE +K +    +I  +  D    +    IAHNA FD  F+    +   NK      + I
Sbjct: 134 TDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLERLSIAFANKPWACSVKEI 189

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV----------YIKM 174
           D      R    ++  L  L    G +    + H A  D   L  V          + ++
Sbjct: 190 D---WTARGFEGTK--LGYLI---GQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAEL 241

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQT 230
           +    +           F  ++               R K  +T + ++EL+   + ++T
Sbjct: 242 LKASQRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYLRT 301


>gi|62317837|ref|YP_223690.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str.
           9-941]
 gi|83269816|ref|YP_419107.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar
           Abortus 2308]
 gi|148558112|ref|YP_001257920.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840]
 gi|189023090|ref|YP_001932831.1| DNA polymerase III subunit epsilon [Brucella abortus S19]
 gi|254690675|ref|ZP_05153929.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|254696020|ref|ZP_05157848.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|254699129|ref|ZP_05160957.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254705536|ref|ZP_05167364.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|254710765|ref|ZP_05172576.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|254732573|ref|ZP_05191151.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|256029148|ref|ZP_05442762.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|256043877|ref|ZP_05446797.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111058|ref|ZP_05452120.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str.
           Ether]
 gi|256157340|ref|ZP_05455258.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|256253680|ref|ZP_05459216.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|256255857|ref|ZP_05461393.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260167759|ref|ZP_05754570.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99]
 gi|260545071|ref|ZP_05820892.1| exonuclease [Brucella abortus NCTC 8038]
 gi|260565052|ref|ZP_05835537.1| exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260756251|ref|ZP_05868599.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6
           str. 870]
 gi|260760381|ref|ZP_05872729.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4
           str. 292]
 gi|260763621|ref|ZP_05875953.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882073|ref|ZP_05893687.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9
           str. C68]
 gi|261216447|ref|ZP_05930728.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3
           str. Tulya]
 gi|261220817|ref|ZP_05935098.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94]
 gi|261312940|ref|ZP_05952137.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M163/99/10]
 gi|261318335|ref|ZP_05957532.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           B2/94]
 gi|261757195|ref|ZP_06000904.1| exonuclease [Brucella sp. F5/99]
 gi|265986133|ref|ZP_06098690.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M292/94/1]
 gi|265990297|ref|ZP_06102854.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           1 str. Rev.1]
 gi|265992595|ref|ZP_06105152.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           3 str. Ether]
 gi|265995827|ref|ZP_06108384.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M490/95/1]
 gi|297249226|ref|ZP_06932927.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|62198030|gb|AAX76329.1| hypothetical exonuclease [Brucella abortus bv. 1 str. 9-941]
 gi|82940090|emb|CAJ13133.1| Exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148369397|gb|ABQ62269.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189021664|gb|ACD74385.1| Exonuclease [Brucella abortus S19]
 gi|260098342|gb|EEW82216.1| exonuclease [Brucella abortus NCTC 8038]
 gi|260152695|gb|EEW87788.1| exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260670699|gb|EEX57639.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4
           str. 292]
 gi|260674042|gb|EEX60863.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260676359|gb|EEX63180.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6
           str. 870]
 gi|260871601|gb|EEX78670.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9
           str. C68]
 gi|260918054|gb|EEX84915.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3
           str. Tulya]
 gi|260919401|gb|EEX86054.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94]
 gi|261297558|gb|EEY01055.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           B2/94]
 gi|261301966|gb|EEY05463.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M163/99/10]
 gi|261737179|gb|EEY25175.1| exonuclease [Brucella sp. F5/99]
 gi|262550124|gb|EEZ06285.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M490/95/1]
 gi|262763465|gb|EEZ09497.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           3 str. Ether]
 gi|263000966|gb|EEZ13656.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           1 str. Rev.1]
 gi|264658330|gb|EEZ28591.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M292/94/1]
 gi|297173095|gb|EFH32459.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
          Length = 332

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 87/240 (36%), Gaps = 31/240 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRII 124
           TDE +K +    +I  +  D    +    IAHNA FD  F+    +   NK      + I
Sbjct: 134 TDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLERLSIAFANKPWACSVKEI 189

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV----------YIKM 174
           D      R    ++  L  L    G +    + H A  D   L  V          + ++
Sbjct: 190 D---WTARGFEGTK--LGYLI---GQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAEL 241

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQT 230
           +    +           F  ++               R K  +T + ++EL+   + ++T
Sbjct: 242 LKASQRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYLRT 301


>gi|282849129|ref|ZP_06258514.1| DNA polymerase III subunit epsilon domain protein [Veillonella
           parvula ATCC 17745]
 gi|282580833|gb|EFB86231.1| DNA polymerase III subunit epsilon domain protein [Veillonella
           parvula ATCC 17745]
          Length = 209

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 71/166 (42%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +   +    +  + + D   T + +   + P       E +++HGI  +
Sbjct: 4   FVALDFETA--NKFKNSACSLAVITVKDGQITKKAYS-LIKPPFMSFDDECIEIHGIQPK 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  + +F  +++  ++  + +    +AHNAKFD+  + A L    K P        T+ 
Sbjct: 61  DVLHEKTFDQLWNAIYE-NHLKGNIMVAHNAKFDMNVLRATLD-YYKIPWPELDYACTVK 118

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++R   P    + LN++    G+   H   H AL D+   + V ++
Sbjct: 119 LSRAVWPDLVNHKLNTMAAYIGVEFKH---HYALDDAETCAKVVLE 161


>gi|27383129|ref|NP_774658.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27356303|dbj|BAC53283.1| blr8018 [Bradyrhizobium japonicum USDA 110]
          Length = 298

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 88/242 (36%), Gaps = 33/242 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL---DYSKTN--RTFQVFLCPNGRKNSPEALKLHG 64
           I+ D ETTGLD + D IIE+G V+     D        TF  F  P+     PE   + G
Sbjct: 45  ILLDTETTGLDHRKDEIIELGMVKFDYTPDGRIVGVRDTFAAFDEPS-APIPPEITAITG 103

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITDE +  +    +  S F D         IAHN+ FD  F     +R        +   
Sbjct: 104 ITDEMVAGQRIDDAAVSAFVD----DAVITIAHNSGFDRKF----AERYWPVFEHKAWGC 155

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVGGSQIN 182
               I  R+H  +   L  L    G    H   H A+ D H L +V  ++    G   + 
Sbjct: 156 SATEIDWREHGFAGAQLGYLLN--GTGFFH-QAHRAVDDCHALLEVLDFVLPTTGAPALA 212

Query: 183 FGFKTN--------EDRFFKEEKKTVPNISLL------KRDKPLFTRITKEELDEHDKTI 228
              +T          ++   E K ++             R K  F  + +  LD+    +
Sbjct: 213 LLLETARRPTLRVWAEQTAFELKDSLKRRGYRWNDGSDGRPKSWFIDVNESGLDDEIAFL 272

Query: 229 QT 230
           + 
Sbjct: 273 RA 274


>gi|227487575|ref|ZP_03917891.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092557|gb|EEI27869.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 310

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 80/222 (36%), Gaps = 18/222 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGIT 66
            +  D ET   + +      +G        K   T+   L P+   +  +P  + +HGIT
Sbjct: 4   FVSIDFETA--NEQRRSACAVGMARFDAEGKLADTYYTLLHPHPDVDYFNPVNVWVHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P +S +  +   F  E+    +AHN  FD   ++         PL+ +R   T
Sbjct: 62  QDDVHDAPQWSDVADDVALFIGER--PIVAHNMAFDGYVLSDLDSLYGAPPLE-NRRFCT 118

Query: 127 LSIARRKHPSS--RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           + +AR+       R  L+ +   Y         H A  D+     ++ +M     Q  FG
Sbjct: 119 VRLARKILADKLERKTLDQVFGYY-FPSEPLDHHHAGFDAQAAGMIFARM-----QEEFG 172

Query: 185 FKTNEDRFFKEEKKTVPNISLLKR---DKPLFTRITKEELDE 223
           +    +       ++        R    +     ++ E L E
Sbjct: 173 YDKLAELCPPTGVRSSSRHRSGGRQAIPRVRADHVSAEALIE 214


>gi|308177075|ref|YP_003916481.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis
           Re117]
 gi|307744538|emb|CBT75510.1| putative DNA polymerase III subunit epsilon [Arthrobacter
           arilaitensis Re117]
          Length = 333

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 10/162 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGIT 66
               D ET   +        +G V++        T Q  + P    +   P  + +H IT
Sbjct: 5   FTAIDFETA--NGFIGSACSVGLVKVRSGQIV-ETEQWLMQPPAGFDHFDPRNISIHHIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P  S    +  +F        +AHN+ FD G I A     ++ P+     + T
Sbjct: 62  SDMVSDAPRVSQKLPDLLEFIGSD--VLVAHNSSFDSGVIRA-ASEASELPVPQIAHLCT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           + ++R+ +      L  + +  G  I +   H AL DS   +
Sbjct: 119 VKLSRKAYDLPSYSLPFVAEEAGHPIENH--HEALADSLACA 158


>gi|110636436|ref|YP_676643.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC
           33406]
 gi|110279117|gb|ABG57303.1| DNA polymerase III, epsilon subunit [Cytophaga hutchinsonii ATCC
           33406]
          Length = 183

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 10/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D ET   ++    I  +G + +++  K  +T    + P     S   +++HGIT
Sbjct: 1   MNFTALDFETA--NTHKTSICAVG-MAIVEDGKVVKTISKLIKPVPDFYSYWNVQIHGIT 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +   D P F  ++ E   + +   +  +AHNA FDVG + + L          +    +
Sbjct: 58  PDMTADAPYFIDVWQELKQYIDY--STLVAHNAAFDVGALRSILTTHEVS-FPKTDYFCS 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            S++R+       + L+++C+   + ++H   H A  D+   + + IK
Sbjct: 115 CSVSRKVFKEIENHKLSTVCRHIDVPLNH---HEAESDAIGAAQIIIK 159


>gi|294792957|ref|ZP_06758103.1| exonuclease [Veillonella sp. 6_1_27]
 gi|294455902|gb|EFG24266.1| exonuclease [Veillonella sp. 6_1_27]
          Length = 209

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 71/166 (42%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +   +    +  + + D   T + +   + P       E +++HGI  +
Sbjct: 4   FVALDFETA--NKFKNSACSLAVITVKDGQITKKAYS-LIKPPFMSFDDECIEIHGIQPK 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  + +F  +++  ++  + +    +AHNAKFD+  + A L    K P        T+ 
Sbjct: 61  DVLHEKTFDQLWNAIYE-NHLKGNIMVAHNAKFDMNVLRATLD-YYKIPWPELDYACTVK 118

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++R   P    + LN++    G+   H   H AL D+   + V ++
Sbjct: 119 LSRAVWPDLVNHKLNTMAAYIGVEFKH---HYALDDAETCAKVVLE 161


>gi|311069195|ref|YP_003974118.1| DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942]
 gi|310869712|gb|ADP33187.1| DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942]
          Length = 208

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 67/178 (37%), Gaps = 10/178 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR +  D ET   +S  +    +G     + S      +  + P   +       LHGI 
Sbjct: 1   MRIVSIDFETA--NSSRNSACSLGMTIFENSSIVMNH-EWLIQPKQNRFHSFNTALHGID 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + ++P F  ++ E   +    N   IAHNA FD+  + + L     D         T
Sbjct: 58  ENMVANEPRFDELWPEIKPYL--TNGLVIAHNASFDISVLRSTLDDYGLDY-PEFEYTCT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           L +A+R         L+ L  R     +H   H A  DS     +++ +      ++F
Sbjct: 115 LQMAKRHWKELESYKLSFLADRINFRFNH---HNAREDSKAAMLIFLHIQEQYKALHF 169


>gi|254457641|ref|ZP_05071069.1| exonuclease [Campylobacterales bacterium GD 1]
 gi|207086433|gb|EDZ63717.1| exonuclease [Campylobacterales bacterium GD 1]
          Length = 231

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 23/195 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D+ETTGL+ + DR+  IG V   D    NRT    +   G+K    A  ++ IT+E 
Sbjct: 3   IFLDVETTGLE-EIDRVCSIGIVWSEDGE--NRTIYELVN-EGKKIPSLASSINHITNEM 58

Query: 70  LKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           LK KP F    SE +      N ++   + HN KFD+  +    ++   + +    IIDT
Sbjct: 59  LKGKPKFQE--SEAYKLLTQHNNEDTTIVGHNIKFDLAML----KKSGFNFI--GEIIDT 110

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHR-----SKHGALLDSHLLSDVYIKMMVGGSQ 180
           L + +       +  L  L  RY + +          H AL D+ +  ++Y  ++    +
Sbjct: 111 LRVTKHLVSECEQFSLQFL--RYELKLYKEEKELLQAHHALSDATIAKNLYEYLLEIQPK 168

Query: 181 INFGFKTNEDRFFKE 195
                 + E+    +
Sbjct: 169 EKLAKLSFENVLLSK 183


>gi|269797470|ref|YP_003311370.1| exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM
           2008]
 gi|269094099|gb|ACZ24090.1| Exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM
           2008]
          Length = 209

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 71/166 (42%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +   +    +  + + D   T + +   + P       E +++HGI  +
Sbjct: 4   FVALDFETA--NKFKNSACSLAVITVKDGQITKKAYS-LIKPPFMSFDDECIEIHGIQPK 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  + +F  +++  ++  + +    +AHNAKFD+  + A L    K P        T+ 
Sbjct: 61  DVLHEKTFDQLWNAIYE-NHLKGNIMVAHNAKFDMNVLRATLD-YYKIPWPELDYACTVK 118

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++R   P    + LN++    G+   H   H AL D+   + V ++
Sbjct: 119 LSRAVWPDLVNHKLNTMAAYIGVEFKH---HYALDDAETCAKVVLE 161


>gi|153832837|ref|ZP_01985504.1| gp41 [Vibrio harveyi HY01]
 gi|148870971|gb|EDL69861.1| gp41 [Vibrio harveyi HY01]
          Length = 207

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 68/185 (36%), Gaps = 25/185 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M + +    I+ D ETTGL S +  I+E  A+               + P       +A 
Sbjct: 1   MKKLSTENAIIIDTETTGLGS-DAEIVEFTAICADSGKVIVNE---LVKPTC-SIPADAT 55

Query: 61  KLHGITDEFLKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----- 114
            +HGIT+E +KD P F  +FS  F    N +    I +N+ FD   I   L +       
Sbjct: 56  AIHGITNEDVKDAPDFHLVFSNHFLPLLNGR--PIIIYNSDFDTRLIIQSLDKHCNAAYV 113

Query: 115 ---KDPLDPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALL 162
               D      I     +   +     N          L++ C +  + +S  + H AL 
Sbjct: 114 QSVHDLFFKFCIPQCAMLWYAEFFGVWNEHHEDYKWQSLSNACAQQSVDVSDLTAHRALA 173

Query: 163 DSHLL 167
           D  + 
Sbjct: 174 DCEMT 178


>gi|322501939|emb|CBZ37022.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 188

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 30/168 (17%)

Query: 37  YSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA--- 92
           + +  R F  ++ P + R+ S  A  +HGIT E ++    ++   SE   +     A   
Sbjct: 9   WIRGGRVFHRYVRPSDPRRISAAAAAVHGITWETVQHCSPWTVAASELVAYMTLVGADAP 68

Query: 93  ---------------------EWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTLSI 129
                                  +AHNA FD  F+   L+R         +     T   
Sbjct: 69  VSASAQLEAAQLGGDRAVRLPPLVAHNASFDARFLEHHLRRCGYQIFWHPQYPLTCTRQW 128

Query: 130 ARRKHPSSRNDLNSLCKRYGIT-ISHRSK--HGALLDSHLLSDVYIKM 174
           A+  +P   N+L++LC    I   + R    HGAL D+ L + ++++M
Sbjct: 129 AQVAYPHLANNLDALCAFLSIDGAADRVANGHGALTDATLTALLFLQM 176


>gi|167465490|ref|ZP_02330579.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 190

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 73/188 (38%), Gaps = 11/188 (5%)

Query: 19  LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSS 78
           LD   D+I EI A+      +  R        +G K +PE + L GI +  ++       
Sbjct: 1   LDPTKDQITEIAAIRTDLIREYGRLDVRITKNSGTKLTPEIINLTGINESMMRGGIPEEL 60

Query: 79  IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138
                  F +   +  +AH+A FD+ F+   L       ++PS  + T  +++   P   
Sbjct: 61  AIPLLACFMS--GSIVVAHHAPFDLSFLARYL-------VEPSSFVCTRVLSKLVEPGES 111

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
             L ++ +R GI ++    H A+ D      ++ ++      +   +        K    
Sbjct: 112 ASLAAVAERRGIELTGH--HRAMADVEATVKIFQQLKAEADALGIRYYNVLINDEKRPLT 169

Query: 199 TVPNISLL 206
            +P ++ +
Sbjct: 170 YIPKLAKV 177


>gi|163787271|ref|ZP_02181718.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium
           ALC-1]
 gi|159877159|gb|EDP71216.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium
           ALC-1]
          Length = 1128

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 21/230 (9%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R I+I                  + P G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDAMGNCIEHQDYLVKPEGFNIPYD 61

Query: 59  ALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-D 116
           A K+HGI+ E  +++  S S +  +F    + +    +  N KFD+  + AE  R +  +
Sbjct: 62  AEKIHGISTELAQEQGVSLSEVLEKFNTALS-KTKFVVGQNVKFDLNIMGAEFVREDVAN 120

Query: 117 PLDPSRIIDTLSI---ARRKHPSSRN---DLNSLCKRYGITISH--RSKHGALLDSHLLS 168
           PL    ++DT +    +  + P  R     L +L + +    +      H A  D    +
Sbjct: 121 PLQELPVLDTCTEHTASLCQIPGGRYGKFKLPTLTELHQFLFNTPFGEAHNATADVEATT 180

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
             + +++              D F K  ++    I L+        R + 
Sbjct: 181 RCFFELIRKQQYTQEQLDVQPDYFQKFSEENPDTIQLIGLKHINLKRASA 230


>gi|288802870|ref|ZP_06408307.1| exonuclease [Prevotella melaninogenica D18]
 gi|288334687|gb|EFC73125.1| exonuclease [Prevotella melaninogenica D18]
          Length = 163

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 9/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   +  +G V +    +   +F   + P          ++HG+T  
Sbjct: 4   FAAIDFETA--NFERCSVCSVGLVIVR-GGEIVDSFYSLIQPEPNYYHWRCTQVHGLTCA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P F  I+ +       +    +AHNA FD   + A       D  D    +DTL 
Sbjct: 61  DTDGAPVFCEIWKQIEPMI--EGLPLVAHNASFDKSCLKASFYTYQMDYPD-YEFLDTLK 117

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ARR  P    + L+++    G  ++    H AL D+   + +  +++
Sbjct: 118 AARRHFPHLPDHQLHTVSSACGYELTDH--HHALADAEACAWIAREIL 163


>gi|332185524|ref|ZP_08387272.1| exonuclease family protein [Sphingomonas sp. S17]
 gi|332014502|gb|EGI56559.1| exonuclease family protein [Sphingomonas sp. S17]
          Length = 191

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 12/170 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ET    S+   I +IG V      +    ++  + P     S   + +HGIT +
Sbjct: 6   FVVIDVETA--CSRTSSICQIGIVGYAAGVEVL-AYETLVDP-CDDFSSFNIGIHGITAD 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  KP+F+++  E       +    +AH + FD G +    +R    P+  +R +D+++
Sbjct: 62  HVLGKPTFAALHPELAMHLGGR--VTVAH-SGFDKGALGRACERDALPPIA-ARWLDSVT 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           IARR  P    + LN+L     + + HR  H AL D+     V ++ M  
Sbjct: 118 IARRAWPELPNHKLNTLAAF--LELEHR-HHDALSDARAAGQVVLRAMSA 164


>gi|306840939|ref|ZP_07473681.1| DNA polymerase III subunit epsilon [Brucella sp. BO2]
 gi|306289062|gb|EFM60324.1| DNA polymerase III subunit epsilon [Brucella sp. BO2]
          Length = 332

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 86/240 (35%), Gaps = 31/240 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRII 124
           TDE +K +    +I  +  D         IAHNA FD  F+    +   NK      + I
Sbjct: 134 TDEMVKGR----TIPRDELDALIAGADIIIAHNAGFDRPFLERFSIAFANKPWACSVKEI 189

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV----------YIKM 174
           D      R    ++  L  L    G +    + H A  D   L  V          + ++
Sbjct: 190 D---WTARGFEGTK--LGYLI---GQSGYFHNGHRAEDDCQALLAVLKGKSGKITPFAEL 241

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQT 230
           +    +           F  ++               R K  +T + ++EL+   + ++T
Sbjct: 242 LKASQRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYLRT 301


>gi|227499152|ref|ZP_03929287.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904599|gb|EEH90517.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 228

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 13/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+E  G     D IIEI A+++    +    F+  + P   K S    ++ GIT + 
Sbjct: 56  VVFDLELAG--YAEDDIIEIAAIKVDFLGRQTAVFRELIRPRT-KISKRVTEMTGITRDM 112

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIIDT-- 126
           +KDKP    +   F+ F   + +  + H+  + D+  IN   +R       P   +DT  
Sbjct: 113 VKDKPQLPEVLKRFFAFV--EGSAVMGHDIGYNDIMAINLACRRYGMKAFRP-PFLDTSR 169

Query: 127 --LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             L    R+    +  L +L   + I I     H AL D      +Y
Sbjct: 170 LILRHLSREAVGGKTGLAALLAHFNIPI--HRHHEALADCEATLLLY 214


>gi|315650299|ref|ZP_07903371.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487410|gb|EFU77720.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 236

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 10/170 (5%)

Query: 9   KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            I FD ETTG   +  D+IIE+ A+ +    +     +       ++   +  +L GI+ 
Sbjct: 12  IIFFDTETTGFHPERLDQIIELAAISIDKTGRQQEMDEFIKLFRVQELPQQITELTGISS 71

Query: 68  EFL--KDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDP----LDP 120
           + L  + K  F+ + ++F D          IAHNA+FD+ F+   + R          + 
Sbjct: 72  DTLSAQGKDEFA-VLNKFIDMIQGNGKTLLIAHNAQFDLKFMAYAIHRNKNKEWMQVFND 130

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              +DTL++ + +     + L S   +Y +    ++ H A+ D   L +V
Sbjct: 131 CDYLDTLTVYKDR-RQYPHRLESAIVQYHLINKVKNSHRAIDDCRALIEV 179


>gi|167752075|ref|ZP_02424202.1| hypothetical protein ALIPUT_00317 [Alistipes putredinis DSM 17216]
 gi|167660316|gb|EDS04446.1| hypothetical protein ALIPUT_00317 [Alistipes putredinis DSM 17216]
          Length = 164

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 57/162 (35%), Gaps = 10/162 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   + +   I  +G V + +           + P     S    ++HG+T  
Sbjct: 4   FVAIDFETA--NRERTSICSVGLVRVENGD-IREKIYRLIRPYPDYYSSWNTRIHGLTYR 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                  F  ++++            +AHN+ FD G + A  ++         R   T  
Sbjct: 61  DTAHAAPFPEVWADISPELA--GLPLVAHNSPFDEGCLKAAFRQYGM-AYPDYRFFCTCR 117

Query: 129 IARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            +RR        + L ++  R G  +  R  H AL D+   +
Sbjct: 118 ASRRVFGRELPNHQLQTVAARCGFDL--RDHHHALADAEACA 157


>gi|291067016|gb|ADD74132.1| DNA polymerase III epsilon subunit-like protein [Rickettsia felis]
          Length = 377

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 61/162 (37%), Gaps = 17/162 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK--TNRTFQVFLCPNGRKNSPEALKLHG 64
           I  D ETTGL  + D+I+E+G V+     D            +  P  +       +L G
Sbjct: 126 IFLDTETTGLSHEKDKILELGMVKFEYTEDGRIYQIVDELNQYQDPQ-QPIPLRITELTG 184

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITDE ++ K       ++F +  +      IAHNA FD  F      R+  + +      
Sbjct: 185 ITDEMVQGKAIDQEAVTQFLEEVD----IIIAHNAAFDRPF----FDRMFPEVITKVWGC 236

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             + I  +      + L  L  +Y         H A++D   
Sbjct: 237 SRVDIDWKAEKIESHKLEYLTYKYNFFYEG---HRAVIDCRA 275


>gi|256058832|ref|ZP_05449048.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261322770|ref|ZP_05961967.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33]
 gi|261298750|gb|EEY02247.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33]
          Length = 332

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 87/240 (36%), Gaps = 31/240 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRII 124
           TDE +K +    +I  +  D    +    IAHNA FD  F+    +   NK      + I
Sbjct: 134 TDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLERLSIAFANKPWACSVKEI 189

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV----------YIKM 174
           D      R    ++  L  L    G +    S H A  D   L  V          + ++
Sbjct: 190 D---WTARGFEGTK--LGYLI---GQSGYFHSGHRAEDDCQALLAVLKGKSGKTTPFAEL 241

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQT 230
           +    +           F  ++               R K  +T + ++EL+   + ++T
Sbjct: 242 LKASQRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYLRT 301


>gi|28899651|ref|NP_799256.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260361502|ref|ZP_05774549.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|260879140|ref|ZP_05891495.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260895473|ref|ZP_05903969.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|260903319|ref|ZP_05911714.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|28807903|dbj|BAC61140.1| putative DNA polymerase III, epsilon subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308088058|gb|EFO37753.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308091615|gb|EFO41310.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308109530|gb|EFO47070.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308112864|gb|EFO50404.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|328472225|gb|EGF43095.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
          Length = 209

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 11/179 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63
           +K   +  D ETT LD     ++ I A +++D    T++ F+V L    +     ++K+H
Sbjct: 26  HKTEFVSLDCETTSLDPNRAELVTIAATKIIDNRILTSQPFEVRLR-APQSLDSGSVKIH 84

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I  + L D  S      +   F   +    + ++ ++D   ++   QR    PL    I
Sbjct: 85  KIRHQDLADGISEKEALLKLLAFIGNR--PLVGYHIRYDKKILDLACQRQLGFPLPNPLI 142

Query: 124 IDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +     +      N      L+++CK   + I  +  H AL D+   + V++++  G
Sbjct: 143 EVSQIYHDKLERHLPNAYFDLSLDAICKHLELPIQDK--HDALQDAISAALVFVRLTKG 199


>gi|307546031|ref|YP_003898510.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
 gi|307218055|emb|CBV43325.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
          Length = 240

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 21/186 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTGLD++   I+ IG V         R  + ++    R    E++  H IT   
Sbjct: 51  VALDMETTGLDARRHAIVSIGVVPFTLGRIALRERRYWIVRPQRTLHAESVTFHHITHTD 110

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTLS 128
           ++  P F  I  +  +    +    + H    +  F++  ++ R+ +  + P  +IDT++
Sbjct: 111 IEQAPEFGEILGDLLEVLAGR--LVVVHYRHIERLFLDDSVKARLGEGLMFP--MIDTMA 166

Query: 129 IARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  R H              P +   L     RYG+ +     H AL D+   +++    
Sbjct: 167 VEARFHRQSWLARFKRWIGRPPASIRLYDSRTRYGLPLYQG--HHALTDALATAELLQAQ 224

Query: 175 MVGGSQ 180
           +    Q
Sbjct: 225 IANHYQ 230


>gi|290963218|ref|YP_003494400.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260652744|emb|CBG75877.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 215

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 14/179 (7%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALK 61
                   V D+ETTGLD + D II +GAV + +       +F   + P     S  ++K
Sbjct: 17  EWRSAEYCVIDLETTGLDLRRDEIISVGAVPVREGRIDLGDSFYSLVRPRCA-VSVASIK 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG+    L   P  +++        + +    +AH A  +  F++     +        
Sbjct: 76  VHGLRPGDLDSAPDPATVGQALSPRLSGR--VVVAHAAWIERAFLSRTQSTVG--WSQVR 131

Query: 122 RIIDTLSIARRK-----HPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++DT ++AR       H S R   L  L +R G+ +   + H AL D+   + V++ +
Sbjct: 132 AVVDTAALARATGCWAGHDSGREPPLELLARRLGLPVC--TPHHALGDALTTATVFLAL 188


>gi|313808696|gb|EFS47150.1| exonuclease [Propionibacterium acnes HL087PA2]
          Length = 210

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 15/171 (8%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  D ET     G+ +      ++  V++LD    +R     + P    +S E   LHG
Sbjct: 43  FVAVDFETANRMGGVSA-----CQVAMVKVLDGQIVDR-LNTLIRPPKGWDSFEFTYLHG 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+   + D P + +I      F +   A   AHNA FD        +      L P+   
Sbjct: 97  ISAADVADAPGWINIADTVSHFVD--GATVYAHNAAFDSRVWRQLDEHFGTTTL-PAPFF 153

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +   A+R  P      L ++           + H A  D+   + +  ++
Sbjct: 154 CSYRTAQRLIPGLPNYKLPTVL-HACAPNYQLNHHRADSDAKACALIVCEL 203


>gi|258620661|ref|ZP_05715698.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM573]
 gi|262172598|ref|ZP_06040276.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
 gi|258587176|gb|EEW11888.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM573]
 gi|261893674|gb|EEY39660.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
          Length = 209

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 78/179 (43%), Gaps = 11/179 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63
           +    +  D ETT LD K   ++ I A +++D    T++ F+V LC   +     ++++H
Sbjct: 26  HHQEYVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLC-APQSLDSGSVRIH 84

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I  + L+D  S      +  DF   +    + ++ ++D   ++   ++    PL    I
Sbjct: 85  KIRHQDLQDGLSEKEALIQLIDFIGNR--PLVGYHIRYDKTILDIACRKHLGFPLPNRLI 142

Query: 124 IDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +     +      N      L+++C+   + +  +  H AL D+   + V++++  G
Sbjct: 143 EVSQIYHDKLEKHLPNAYFDLSLDAICRHLDLPLQDK--HDALQDAIAAALVFVRLTKG 199


>gi|126665477|ref|ZP_01736459.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
 gi|126630105|gb|EBA00721.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
          Length = 245

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 75/199 (37%), Gaps = 27/199 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
              +++  +  D ETTGL +    II +G V   L+  + +      + P        ++
Sbjct: 48  TPLSQVPMVAIDFETTGLSATEHSIISVGLVPFTLEGIQLSAARHWLVKPKLA-LHQTSV 106

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGIT   L+  P    I  E  +    +    + H    +  F++  L R        
Sbjct: 107 TIHGITHADLEQAPDLVDILPELLECLAGRLP--VVHYRDIERPFLDVAL-RHRLQEGIQ 163

Query: 121 SRIIDTLSIARRKHPSSRN--------------DLNSLCKRYGITISHRSKHGALLDSHL 166
             ++DT++I    HP  R                L+    RYG+   H + H AL+D+  
Sbjct: 164 FPLLDTMAIEAHLHPDRRPTFWQTWRGKKPLSIRLSDSRLRYGLP--HYAAHNALMDAIA 221

Query: 167 LSDVYIKMMVGGSQINFGF 185
            +++        +QI   F
Sbjct: 222 TAELL------QAQIAHHF 234


>gi|119944727|ref|YP_942407.1| DNA polymerase III subunit epsilon [Psychromonas ingrahamii 37]
 gi|119863331|gb|ABM02808.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas
           ingrahamii 37]
          Length = 238

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 74/202 (36%), Gaps = 27/202 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL 60
              + +  +  D ETTGLDS+ + II IG V          +  + ++ P        ++
Sbjct: 41  TPLSDIDFVALDFETTGLDSQQNGIISIGLVPFNLQRIFCRKVKEWYINPQD-NLQENSI 99

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGIT   L+D P    I  +  D    +    + H  + +  F++  L RI  D    
Sbjct: 100 IIHGITHSDLQDAPDILRILEQLLDELAGK--VVVVHYRRIERDFLDHTL-RILIDEGIL 156

Query: 121 SRIIDTLSIARRKHPSS--------------RNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +IDT+ I                         L     RY + +     H AL D+  
Sbjct: 157 FPVIDTMQIEANLQRRKSQGLFNFFNKKRPESIRLADSRARYNLPVY--PPHDALTDAIA 214

Query: 167 LSDVYIKMMVGGSQINFGFKTN 188
            +++        +QI + F  +
Sbjct: 215 TAELL------QAQIKYHFSPD 230


>gi|319440529|ref|ZP_07989685.1| DNA polymerase III subunit epsilon [Corynebacterium variabile DSM
           44702]
          Length = 214

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 15/180 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66
           +  D+ETTGLD K DR++ IG V L          +  +  +   +     E+  LHG+T
Sbjct: 27  LAVDVETTGLDPKRDRLLSIGWVPLDGRVIDLSGAREVILRDTVDHDAGVGESATLHGLT 86

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ +           E  +    +    +AH A  + GF++A  +R      +   ++DT
Sbjct: 87  DDTVATGIPAGEALGELLEAI--RGRALLAHFAVMETGFLDAVCRRELGLRFEV-PVVDT 143

Query: 127 LSIARR------KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           L + RR       +P   +  L  + +RYG+     S H A+ D+   +++Y+ +  GG 
Sbjct: 144 LDLERRHMERMGTYPRGEDLRLPRVRQRYGLPYY--SNHRAVTDALACAELYLALTAGGE 201


>gi|217980141|ref|YP_002364191.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
 gi|217508312|gb|ACK55097.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
          Length = 201

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 27/181 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGL   +  ++EI  ++       +      + P+G     EA+ +HGITD  
Sbjct: 23  LILDTETTGL-GDDAEVVEIAVIDCAGNVLLD----TLVRPSG-PVPAEAVAIHGITDAM 76

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-------LDPSR 122
           L D P++S I   F      +  + + ++ +FD   I+   +R            LD  R
Sbjct: 77  LADAPTWSEIHDRFCCLV--EGRQVVIYSREFDARLISQTARRYGLPAPKGFDQVLDDDR 134

Query: 123 IIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           I   +  A        +          L++  ++ G+T+ +   H AL D  +   +   
Sbjct: 135 IHCAM-HAYAAFRGEWSEEKGRYRWQKLSAAAEQQGVTVGN--AHRALGDCVMTLGIIRA 191

Query: 174 M 174
           M
Sbjct: 192 M 192


>gi|46255199|ref|YP_006111.1| hypothetical protein TT_P0128 [Thermus thermophilus HB27]
 gi|46198048|gb|AAS82458.1| hypothetical protein TT_P0128 [Thermus thermophilus HB27]
          Length = 1649

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 22/234 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP--EALKLHGI- 65
            +  D+E T  D     ++E+ AV+        R F  +L    R   P  E  +L GI 
Sbjct: 8   PVALDLEATSTDPSEAEVLEVAAVDGE-----GRVFHRYLA-TQRPLPPDHEVFQLTGIP 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRII 124
            +E+   K +      E   F   +    + HN  ++D+  +   L+     P      +
Sbjct: 62  YEEYEAKKVAPKEALEELLAFLGGR--PLLGHNLLRYDLPLLQRHLEEAGL-PRWQGEAL 118

Query: 125 DTLSIARRKHPSSR-----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           DTL +A    P+         L  L     +       H AL D+     V+ +++  G 
Sbjct: 119 DTLRLAHLLFPTPPGGLEGYRLGDLYAFL-LGRPLEGAHRALNDAQATLAVFHRLLDRGR 177

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           +       +        +  +P   L   D+ L   +   E D     ++  G+
Sbjct: 178 R---ALAQHPGLVRAWRELGLPEGHLFPEDEGLIKDLLAREADVEAFFVEKEGR 228


>gi|72160587|ref|YP_288244.1| DNA polymerase III subunit epsilon [Thermobifida fusca YX]
 gi|71914319|gb|AAZ54221.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX]
          Length = 250

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 12/156 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68
           + FDIETTG++ + DR++    +E      + RT + +L   G +  PEA+ +HGI+ E 
Sbjct: 17  VGFDIETTGINLEQDRVVTAAIIETAADG-SQRTRRTWLVNPGVEIPPEAVAIHGISTEL 75

Query: 69  FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDP----- 120
            + D        +E  D      +     +  NA FD+  ++ E +R    PL       
Sbjct: 76  AVADGIPAPVAVAEITDLLEQVLQSGTPLVIMNAPFDLTILDRECRRYGVVPLSERLDTV 135

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISH 154
           + +ID L + R   ++   +  L +LC  YG+    
Sbjct: 136 APVIDPLILDRHIDRYRRGKRTLEALCAHYGVPYDG 171


>gi|238020074|ref|ZP_04600500.1| hypothetical protein VEIDISOL_01954 [Veillonella dispar ATCC 17748]
 gi|237863598|gb|EEP64888.1| hypothetical protein VEIDISOL_01954 [Veillonella dispar ATCC 17748]
          Length = 209

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 70/166 (42%), Gaps = 9/166 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +   +    +  + + D     + +   + P       E +++HGI  +
Sbjct: 4   FVALDFETA--NKFKNSACSLAVITVKDGQIIKKAYS-LIKPPFMSFDDECIEIHGIQPK 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  + +F  +++  ++  + +    +AHNAKFD+  + A L    K P        T+ 
Sbjct: 61  DVIHEKTFDQLWNAIYE-NHLKGNIMVAHNAKFDMNVLRATLD-YYKIPWPDLDYACTVK 118

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++R   P    + LN++    G+   H   H AL D+   + V ++
Sbjct: 119 LSRAVWPDLVNHKLNTMAAYIGVEFKH---HYALDDAETCAKVVLE 161


>gi|149190247|ref|ZP_01868521.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
 gi|148835854|gb|EDL52817.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
          Length = 144

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 9/145 (6%)

Query: 100 KFDVGFINAELQRIN---KDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHR 155
            FDVGF++ E ++++          ++ DTL++A+R      R +L+SL K Y I  S R
Sbjct: 2   PFDVGFMDYEFEKLDASIGKTEQYCKVTDTLAMAKRMANMPARKNLDSLAKHYTIDTSAR 61

Query: 156 SKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
             HGALLD+ +L+DVY+ M  G + + F     +    +   +T+  ++   R       
Sbjct: 62  VLHGALLDAEILADVYLAMTGGQTSMQF--NAGQSDGDESGGETIKRLTTG-RKSLKILH 118

Query: 216 ITKEELDEHDKTIQTL--GKNAIWD 238
            + +E++ H+  +  +  G + +W 
Sbjct: 119 ASADEIEAHNSRLDIVEKGGSCLWR 143


>gi|258623764|ref|ZP_05718722.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM603]
 gi|258583961|gb|EEW08752.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM603]
          Length = 209

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 78/180 (43%), Gaps = 11/180 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
            +    +  D ETT LD K   ++ I A +++D    T++ F+V LC   +     ++++
Sbjct: 25  AHHQEYVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLC-APQSLDSGSVRI 83

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H I  + L+D  S      +  DF   +    + ++ ++D   ++   ++    PL    
Sbjct: 84  HKIRHQDLQDGLSEKEALIQLIDFIGNR--PLVGYHIRYDKTILDIACRKHLGFPLPNRL 141

Query: 123 IIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           I  +     +      N      L+++C+   + +  +  H AL D+   + V++++  G
Sbjct: 142 IEVSQIYHDKLEKHLPNAYFDLSLDAICRHLDLPLQDK--HDALQDAIAAALVFVRLTKG 199


>gi|300777777|ref|ZP_07087635.1| DNA-directed DNA polymerase III epsilon subunit [Chryseobacterium
           gleum ATCC 35910]
 gi|300503287|gb|EFK34427.1| DNA-directed DNA polymerase III epsilon subunit [Chryseobacterium
           gleum ATCC 35910]
          Length = 184

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 65/166 (39%), Gaps = 11/166 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGI 65
           M     D ET     +     E+G   + D SK   T    + P      S   + +HGI
Sbjct: 1   MDFCAIDFETA--THEKSSACEMGICVVQD-SKIVETKTWLIKPPSFPYFSKFNIAVHGI 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E +KD P+F  I+ E  D      +  IAHNA FD   +   L+            + 
Sbjct: 58  QPEDVKDAPTFDEIWYEAQDMM--YGSLMIAHNAGFDASVLRGCLEHYGM-FTPKLNYLC 114

Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++ +A++      +  L  L + + I  +H   H A  D+ + + +
Sbjct: 115 SIQLAKKSWNYLPKYGLKPLAEYHKIDFTH---HRAGADAEVCAKI 157


>gi|313108556|ref|ZP_07794557.1| putative nuclease [Pseudomonas aeruginosa 39016]
 gi|310881059|gb|EFQ39653.1| putative nuclease [Pseudomonas aeruginosa 39016]
          Length = 208

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 80/174 (45%), Gaps = 11/174 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I  D+ETT LD +   I+ IGAV +           ++++ P       E++++H +   
Sbjct: 33  ISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPP-SLDAESIRIHKLRRA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127
            L+ +        +   F  ++    + +   FDV  +N  L+++    L  PS  I +L
Sbjct: 92  DLEGQLQLEQALRQLLAFIGDR--PLLGYYLSFDVAVLNRHLRQLFDRQLHNPSIEISSL 149

Query: 128 SIAR--RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              +  R  P +  DL  ++L +   + +S R  H AL D+  ++ ++++++ G
Sbjct: 150 YHRKVSRHFPDAHIDLRFDTLARALDVPVSGR--HTALGDAQAVALMFMRLLKG 201


>gi|729197|sp|P41060|CP81_BP186 RecName: Full=Uncharacterized exonuclease CP81
 gi|3337284|gb|AAC34183.1| Orf81 [Enterobacteria phage 186]
          Length = 194

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 67/182 (36%), Gaps = 21/182 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ETTGL   +  I+EI  ++   +   N      + P  +    EA  +HGITDE 
Sbjct: 21  IFIDTETTGL-GDDAEIVEICLIDSAGFIMLN----TLVKPT-KPIPAEATAIHGITDEM 74

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID---- 125
           +   P++  I       F E    ++ +NA +D   I    +    +       ++    
Sbjct: 75  VMYAPTWKDIHGAVASLFFEYG--FVIYNADYDTRLIYQTAKLYGLENDGFCYFLNERSA 132

Query: 126 ---TLSIARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
               L    R  P        + L       G+++  +  H AL D  +   +   +  G
Sbjct: 133 CAMMLYAEYRGEPGRFKGYKWHKLVDAAAHEGVSVEGK-AHRALADCRMTLGIIDALAKG 191

Query: 178 GS 179
           G+
Sbjct: 192 GA 193


>gi|49079546|gb|AAT49904.1| PA3232 [synthetic construct]
          Length = 209

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 82/174 (47%), Gaps = 11/174 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I  D+ETT LD +   I+ IGAV +           ++++ P       E++++H +   
Sbjct: 33  ISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPP-SLDAESIRIHKLRRA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127
            L+ +        +   F  ++    + +   FDV  +N  L++ +++   +PS  I +L
Sbjct: 92  DLEGQLQLEQALRQVLAFIGDR--PLLGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISSL 149

Query: 128 SIAR--RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              +  R  P +  DL  ++L +   + +S R  H AL D+  ++ ++++++ G
Sbjct: 150 YHRKVSRHFPDAHIDLRFDTLARALDVPVSGR--HTALGDAQAVALMFMRLLKG 201


>gi|297530374|ref|YP_003671649.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp. C56-T3]
 gi|297253626|gb|ADI27072.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp. C56-T3]
          Length = 242

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 66/196 (33%), Gaps = 11/196 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R   +  ++ D+ETTG   +  D I+ + A + +        +   + P  +        
Sbjct: 56  RLTDIPFVIIDMETTGFSPEQGDEILAMAAAKTV-GGVVTDAYMTLVKPE-KPIPEHISA 113

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GI  + +   P  +     F  F        I ++   D+ F+   L R  +      
Sbjct: 114 LTGIEAKDVVFAPPLAEALRTFVPFIAAG--VLIGYHIGHDLAFLRHALWRHYRQKWS-G 170

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           R +D L         S    +     YGI    R  H A  D   ++ ++  ++    Q 
Sbjct: 171 RFVD-LQPMMTLIGHSCPTFDDALACYGICCPRR--HTADGDVEAMAKLWAILLDEFRQR 227

Query: 182 NFGFKTNEDRFFKEEK 197
             G  T  D +    +
Sbjct: 228 --GIDTLHDLYAALSR 241


>gi|227496849|ref|ZP_03927115.1| possible DNA polymerase III subunit epsilon [Actinomyces
           urogenitalis DSM 15434]
 gi|226833644|gb|EEH66027.1| possible DNA polymerase III subunit epsilon [Actinomyces
           urogenitalis DSM 15434]
          Length = 174

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK---NSPEALKLHGI 65
             V D+ETTGL    D I+EIG V         RT+   + P              +HG+
Sbjct: 49  YAVVDLETTGLSPATDAILEIGLVLTAPDGTPQRTWSTLINPGAGPDGAIEVGPTFIHGL 108

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRII 124
             + L   PS   +        +      +AHNA+FDVGF+   L  R +         +
Sbjct: 109 LPDDLAGAPSLDDVADLLVR--DLAGRVVVAHNARFDVGFLTQALGTRGHLARGARVPRV 166

Query: 125 DTLSIARR 132
            T+  AR 
Sbjct: 167 CTMEWARH 174


>gi|311745409|ref|ZP_07719194.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1]
 gi|126577956|gb|EAZ82176.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1]
          Length = 223

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 22/173 (12%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKL 62
            +++  +V D ETTGL+   D I+  GAV++ D      T  + +L     K   + + +
Sbjct: 34  LDQLSFVVLDTETTGLNPSVDHILSFGAVKIEDQMIQISTGVEWYLK--SSKKDFKTIPV 91

Query: 63  HG-ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           HG I +E   +            ++F  +N   + H+  FD+  +   L+    D +  +
Sbjct: 92  HGLIGNE---EAVPLEQFAKRVLEYF--ENNILVGHHLGFDLEMLEKALKPFGLDKI-QN 145

Query: 122 RIIDTLSIA----------RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           + IDT+S+A          R         L+SLC+RY I    R  H A  D+
Sbjct: 146 KCIDTMSLAIRLDHGLMADRNYIDFKDYSLDSLCQRYDIKTDDR--HTAGGDA 196


>gi|153839349|ref|ZP_01992016.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810]
 gi|149747140|gb|EDM58128.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810]
          Length = 209

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 11/179 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63
           +K   +  D ETT LD     ++ I A +++D    T++ F+V L    +     ++K+H
Sbjct: 26  HKTEFVSLDCETTSLDPNRAELVTIAATKIIDNRILTSQPFEVRLR-APQSLDSRSVKIH 84

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I  + L D  S      +   F   +    + ++ ++D   ++   QR    PL    I
Sbjct: 85  KIRHQDLADGISEKEALLKLLAFIGNR--PLVGYHIRYDKKILDLACQRQLGFPLPNPLI 142

Query: 124 IDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +     +      N      L+++CK   + I  +  H AL D+   + V++++  G
Sbjct: 143 EVSQIYHDKLERHLPNAYFDLSLDAICKHLELPIQDK--HDALQDAISAALVFVRLTKG 199


>gi|255292918|dbj|BAH90017.1| DNA polymerase III epsilon subunit [uncultured bacterium]
 gi|255293172|dbj|BAH90263.1| DNA polymerase III epsilon subunit [uncultured bacterium]
          Length = 297

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 88/243 (36%), Gaps = 35/243 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK------TNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ETTGLD + D IIE+ A+   +Y           +FQ    P+ +  +PE   + 
Sbjct: 44  LVVDVETTGLDPQRDEIIEL-AMTPFNYGLDGTIFSVGDSFQRLRQPS-KPIAPEITAIT 101

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSR 122
           GIT+E +        I            A  + AHNA FD  F+         D      
Sbjct: 102 GITNEMVAG-----QIVDPAAVASFAAPASLVIAHNAAFDRRFLERF-----NDVFSTKP 151

Query: 123 IIDTLSI-ARRKHPSSRNDLNSLCKRYGITIS-HRSKHGALLDSHLLSDVYI-------- 172
              +LS             L  L +  G     HR+ H  L    LL+ +++        
Sbjct: 152 WACSLSQIDWAAEGFEGTKLAYLAQAAGFFYDRHRAMHDCLATVELLA-MWLPRSGATGL 210

Query: 173 -KMMVGGSQINFGFKTNEDRF----FKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
            +++ G   +++        F      + +    N     + +  +  + + + +   + 
Sbjct: 211 SRLLDGARAVSWRIWAENAPFDLKDVLKARGYRWNGDPGPQPRAWYIDVPEAQCEAELRF 270

Query: 228 IQT 230
           ++T
Sbjct: 271 LRT 273


>gi|325293446|ref|YP_004279310.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3]
 gi|325061299|gb|ADY64990.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3]
          Length = 202

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 10/158 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      IG +  ++  +  R  +  + P   + SP  + +HGI 
Sbjct: 1   MKTIAIDFETA--NEERGSACSIG-LAWIEDGEIVRVEERLIRPKDMRFSPFNIAVHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P F  +  EF D  +   A  IAHNA FD   + A   +  +        + +
Sbjct: 58  PADVEDAPEFPDVMEEFID--DFHGATMIAHNAAFDFSVMRASFDKY-RQSYPDLSYLCS 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163
           + IAR   P  + + LN +     +   H   H A  D
Sbjct: 115 VKIARHVWPQLASHKLNVIAHHLQLRFVH---HNAAED 149


>gi|325954953|ref|YP_004238613.1| DNA polymerase III subunit alpha [Weeksella virosa DSM 16922]
 gi|323437571|gb|ADX68035.1| DNA polymerase III, alpha subunit [Weeksella virosa DSM 16922]
          Length = 1463

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 87/244 (35%), Gaps = 33/244 (13%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL         D     R I+I      +           + P+G     +
Sbjct: 2   YLIFDTETTGLPKDWNAPITDSDNWPRCIQIAWQLHDELGNLVEHQDYLVKPDGFDIPYD 61

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
           + ++HGI+     +       +  +F      +    +  N  FD+  + AE  R   + 
Sbjct: 62  SERIHGISTALATEQGVPLEEVLDKFQKAL-AKTKFIVGQNLGFDINIMAAEFYRKGVEN 120

Query: 117 PLDPSRIIDTLSIARRKH------PSSRNDLNSLCK----RYGITISHRSKHGALLDSHL 166
            LD   ++DT +    +          R  L +L +     + +  S    H A  D   
Sbjct: 121 KLDQLPVLDTCTETTAELLKLPGGRGGRYKLPTLTELHEFLFQVPFS--EAHNATADVEA 178

Query: 167 LSDVYIKMMVGGSQINFGFKTNED---RFFKEEKKTVPNI-----SLLKRDKPLFTRITK 218
            +  + +++  G       + +E+   RF       + +I     +L K  + +  R+ K
Sbjct: 179 TARCFFELIRTGVFTLQDLQKDENYFTRFRTANPTEIASIGLKHTNLKKASEAIAKRLAK 238

Query: 219 EELD 222
           EE D
Sbjct: 239 EEPD 242


>gi|312884148|ref|ZP_07743860.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368196|gb|EFP95736.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 239

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 31/197 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGLDS +D II IG V   +D    N+     + P  ++   E++ +HGIT 
Sbjct: 49  FLAMDFETTGLDSNDDDIITIGTVPFTIDRIMINKAKHWTVKP-RKQLPEESVVIHGITH 107

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDT 126
             + D P  S ++ E  +         + H  + +  F +  L+ RIN+    P  +IDT
Sbjct: 108 SDILDAPDLSGVYREVLEQMA--GKVMVVHYQRIEREFFDKALKTRINEGIEFP--VIDT 163

Query: 127 LS---------------IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +                  +R+ P S   L +   RYG+ +     H AL D+   +++ 
Sbjct: 164 MQLETIAQQKMTSGLINRLKRRQPES-VRLGASRSRYGLPLY--PPHHALTDAVATAELL 220

Query: 172 IKMMVGGSQINFGFKTN 188
                  +QI   +K N
Sbjct: 221 ------QAQIAHHYKRN 231


>gi|311694144|gb|ADP97017.1| DNA polymerase III, epsilon subunit [marine bacterium HP15]
          Length = 235

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 12/191 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D+ETTGL+   D +I IGAV +          F + L         E + +HGI 
Sbjct: 40  RLIVLDLETTGLNPSKDEVIAIGAVAIRGGIIHLGDQFDLILRRPELDI-RETVLIHGIG 98

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E L              ++ N      +A+++ FD  F+   L +       P   +D 
Sbjct: 99  PEALTQGHEIEDALLYLLEWMN--GDPILAYHSAFDQKFLEKTL-KAQLGYTQPHTWMDV 155

Query: 127 LSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             +     P+++     L++    +G+ +S R  H A  D+   +++   ++      + 
Sbjct: 156 ADLMPAFFPNTKTGGKGLDNWADYFGLEVSER--HHAASDALATAEL--TLVALNKARSE 211

Query: 184 GFKTNEDRFFK 194
           G KT +  + K
Sbjct: 212 GVKTLKGLYDK 222


>gi|295693069|ref|YP_003601679.1| CRISPR-associated protein, cas2 [Lactobacillus crispatus ST1]
 gi|295031175|emb|CBL50654.1| CRISPR-associated protein, Cas2 [Lactobacillus crispatus ST1]
          Length = 298

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 9/168 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            V DIETTGL+ + D+II IGA++ L+ +   + F   +  +  +      K+  +    
Sbjct: 130 AVLDIETTGLNLEKDKIISIGAIKYLENNDCEK-FYRLIKVDT-EVPDNIEKITQLNKGV 187

Query: 70  LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L +K     +   +   F  ++    + +N  FD+ F+N + ++     L  +  +D LS
Sbjct: 188 LANKGIDIKTALLDLRKFLADR--IVVGYNLPFDINFLNRDFKKYCHYSLL-NECVDLLS 244

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             ++K+       L+++ + Y I  S+   H +L D+    ++  K++
Sbjct: 245 AVKKKNVFLDNYHLSTVLENYNIKNSN--PHNSLADAVATMELLKKLI 290


>gi|160891538|ref|ZP_02072541.1| hypothetical protein BACUNI_03990 [Bacteroides uniformis ATCC 8492]
 gi|317478357|ref|ZP_07937521.1| exonuclease [Bacteroides sp. 4_1_36]
 gi|156858945|gb|EDO52376.1| hypothetical protein BACUNI_03990 [Bacteroides uniformis ATCC 8492]
 gi|316905516|gb|EFV27306.1| exonuclease [Bacteroides sp. 4_1_36]
          Length = 163

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 9/161 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   +  +G V + D    +  +   + P     +    ++HG+T  
Sbjct: 4   FAAIDFETA--NEQRTSVCSVGVVIVRDGEIVD-HYYSLIRPEPEYYTYWNTRVHGLTLA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +D P F  ++ E       +    +AHN  FD   + A  +    D  D      TL 
Sbjct: 61  DTQDAPIFPVVWQEIAPRI--EGLPLVAHNKAFDESCLKAVFRTYCMDYPD-YEFYCTLQ 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            +RR         L+++    G  + H   H AL D+   +
Sbjct: 118 ASRRAIKGLPNYQLHTVAVCCGYQLEHH--HHALADAEACA 156


>gi|153006661|ref|YP_001380986.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030234|gb|ABS28002.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
          Length = 200

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 19/186 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKLHGITDE 68
             D+ET GLD++ D II IG + +     +    +   + P  GR   P++++ H +   
Sbjct: 15  ALDLETGGLDARRDPIIAIGMLPIRHGTLRLGEAYYSLVRPPPGRIIDPDSVRAHQLVAG 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126
            L++ P+   +  E      E     + H+   DV F+    +R       P     +D 
Sbjct: 75  ELREAPAIGEVLREVDRRLREG--VLLVHHRALDVAFLKDAYRRCGMRWPAPRVVDTVDL 132

Query: 127 LSIARRKHPSSRND---------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--M 175
           L  A+R+ P              L    + YG+       H AL D+   +++++ +  +
Sbjct: 133 LIRAKRRSPFKDPHLPPVLPVLNLTRARREYGLP--DYQAHDALSDAIAAAELFLVLRSV 190

Query: 176 VGGSQI 181
           VG  ++
Sbjct: 191 VGARRL 196


>gi|257452752|ref|ZP_05618051.1| exonuclease [Fusobacterium sp. 3_1_5R]
 gi|317059293|ref|ZP_07923778.1| exonuclease [Fusobacterium sp. 3_1_5R]
 gi|313684969|gb|EFS21804.1| exonuclease [Fusobacterium sp. 3_1_5R]
          Length = 186

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 23/187 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGI 65
           M+ +  D ETTGL  ++  II++ A+  +D  +   T  ++  P      S EAL +   
Sbjct: 1   MKILYLDTETTGLTYRS-TIIQLAAIVEIDG-EIKETINLYCAPFPDSDISEEALSITKF 58

Query: 66  TDEFL--KDKP-----SFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDP 117
           T E +   D P     +F+ I  ++ D +N+ +   +  HN KFD+  +     R N+  
Sbjct: 59  TREEIFQFDSPQVVCQTFTQILGKYVDKYNKNDKFIVIGHNVKFDLDMLRNWAYRCNERF 118

Query: 118 ----LDPSRIIDTLSIARRKHPSSR------NDLNSLCKRYGITISHRSKHGALLDSHLL 167
               +D     DTL+  +      R      N L +LC+ + I + +   H AL D+   
Sbjct: 119 IASYIDFKNEFDTLAFTKCLKILGRLPQTENNKLETLCQAFQIPLEN--AHNALADTIAA 176

Query: 168 SDVYIKM 174
            D+Y  +
Sbjct: 177 KDLYHYL 183


>gi|188582299|ref|YP_001925744.1| DNA polymerase III subunit epsilon [Methylobacterium populi BJ001]
 gi|179345797|gb|ACB81209.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
          Length = 298

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 91/246 (36%), Gaps = 45/246 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSK------TNRTFQVFLCPNGRKNSPEALKLHGI 65
            D+ETTGLD + D IIE+ A+   +Y           +FQ    P+    +PE   + GI
Sbjct: 47  VDVETTGLDPQRDEIIEL-AMTPFNYGLDGTVFSVGDSFQGLRQPS-EPITPEITAITGI 104

Query: 66  TDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           T+E +  +    + +       F    +  IAHNA FD  F+         D        
Sbjct: 105 TNEMVAGQVIDPAEVAK-----FAAPASLVIAHNAAFDRRFLERFS-----DVFSTKPWA 154

Query: 125 DTLS---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM------M 175
            +LS    A      ++  L  L +  G       +H A+ D     ++ + M      +
Sbjct: 155 CSLSQIDWAAEGFEGAK--LAYLAQAAGFFYD---RHRAMHDCLATVEL-LAMRLPRSGV 208

Query: 176 VGGSQINFGFKTNEDRFFKE-----------EKKTVPNISLLKRDKPLFTRITKEELDEH 224
            G S++  G +T   R + E            +    N     + +  +  + + + +  
Sbjct: 209 TGLSRLLDGARTVAWRIWAENSPFDLKDVLKARGYRWNGDPGPQPRAWYIDVPEAQREAE 268

Query: 225 DKTIQT 230
            + ++T
Sbjct: 269 LRFLRT 274


>gi|119468877|ref|ZP_01611902.1| putative DNA polymerase, exonuclease activity [Alteromonadales
           bacterium TW-7]
 gi|119447529|gb|EAW28796.1| putative DNA polymerase, exonuclease activity [Alteromonadales
           bacterium TW-7]
          Length = 207

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 16/185 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            R +V D+E TGLDSK   I+ +  V + +        Q F+  + +      +  HGI+
Sbjct: 23  QRYLVIDLELTGLDSKQHEIVSVAWVVIDNQCIKMSESQHFINKDVKSLEQSPV-FHGIS 81

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +    S  SI       F+  +   + HNA  D GF+   L+        P  IIDT
Sbjct: 82  TDSVAQGQSLQSILMSLSAHFS--DCILVFHNAMLDWGFLKLALKNAGVTQ-RPKLIIDT 138

Query: 127 LSIARRKHPSSRN--DLNSL----CK-RYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           L I +++     +   L+ L    C+ RY +   H   H AL D+   +++   ++    
Sbjct: 139 LQIEKKRLLQHASDIKLDDLTLNECRNRYDLPSYH--CHHALTDAQATAEL---LLAQCH 193

Query: 180 QINFG 184
           QI  G
Sbjct: 194 QIGAG 198


>gi|88859048|ref|ZP_01133689.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas
           tunicata D2]
 gi|88819274|gb|EAR29088.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas
           tunicata D2]
          Length = 210

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 71/177 (40%), Gaps = 13/177 (7%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + + +V D+E TGLD K D I+ +  + + +        + F+     +     +  HGI
Sbjct: 25  RAKYLVIDLELTGLDPKVDEIVSLAWLPIEEQRIIVGRSEHFINCEVNELKQSPI-FHGI 83

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
               +K          E     ++     + HNA+ D  F+ A  Q  N   L  S ++D
Sbjct: 84  DRFAVKGGVPLRQALLELQPLLDDH--VLVFHNAELDWAFLKAAFQNANL-LLSSSVMLD 140

Query: 126 TLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T+ I  ++  +  +       +L     RY +       H AL D+   +++++  +
Sbjct: 141 TMKIEYKRLMNQGHEIASDDLNLARCRSRYQLP--EYLTHNALTDALATAELFLAQL 195


>gi|163845121|ref|YP_001622776.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445]
 gi|163675844|gb|ABY39954.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 332

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 87/240 (36%), Gaps = 31/240 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEIARITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRII 124
           TDE +K +    +I  +  D    +    IAHNA FD  F+    +   NK      + I
Sbjct: 134 TDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLERLSIAFANKPWACSVKEI 189

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV----------YIKM 174
           D      R    ++  L  L    G +    + H A  D   L  V          + ++
Sbjct: 190 D---WTARGFEGTK--LGYLI---GQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAEL 241

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQT 230
           +    +           F  ++               R K  +T + ++EL+   + ++T
Sbjct: 242 LKASQRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYLRT 301


>gi|163840229|ref|YP_001624634.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC
           33209]
 gi|162953705|gb|ABY23220.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC
           33209]
          Length = 327

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 17/222 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLHGIT 66
               D ET   +        +G   +         F   + P     +  P  + +HG+T
Sbjct: 5   FTAIDFETA--NGFRGSPCAVGLSRVRGGEIVEEAF-WLMRPPAGHDRFDPRNIAIHGVT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +  +P F  +F E   F  +     +AHNA FD G +    Q ++           T
Sbjct: 62  PQQVASQPRFDRVFDEVQRFIGQD--ILVAHNAAFDTGVM-RSAQEVSAKSGPRYDYACT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           + +ARR +      L  + +  G+ + +   H A+ D+   + + I ++           
Sbjct: 119 VMLARRSYSLPSYSLPFVAEAAGVPLINH--HDAVEDARACAGIMIDIVAR------HDV 170

Query: 187 TNEDRFFKEEKKTVPNISLLK-RDKPLFTRITKEELDEHDKT 227
            N    +++   T+P++ + +  D P  T +  +    + + 
Sbjct: 171 ANIAELYRKFGLTLPSLEVFQPSDLPAATSLLADSAASNQER 212


>gi|307243536|ref|ZP_07525684.1| exonuclease [Peptostreptococcus stomatis DSM 17678]
 gi|306493092|gb|EFM65097.1| exonuclease [Peptostreptococcus stomatis DSM 17678]
          Length = 460

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 65/197 (32%), Gaps = 38/197 (19%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-------------- 54
            +  D+E TG +   + IIE+ A+++ D    +  F   + P                  
Sbjct: 19  YVAIDLELTG-NYCLNYIIELAALKVRDGVIIDE-FSSLVRPPDYNVLEKRKGSKSGYKA 76

Query: 55  ----------------NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98
                                  L GI++E +      + +  +F DF    +   I H 
Sbjct: 77  KKIKSTVNVDGQEIYYIDEFIEDLTGISNEMIYSAEDETHVIKKFHDFIG--DLPVIGHG 134

Query: 99  AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
              D+  I     RI  D    +  IDT  +    +   +  L  LC   GI  S    H
Sbjct: 135 MGNDIREIKDSFDRI-LDKDFENPCIDTFDLGEFAY-GEKFSLIRLCDHLGIDNSD--VH 190

Query: 159 GALLDSHLLSDVYIKMM 175
            A  D++     Y+ ++
Sbjct: 191 RARSDAYRTHLSYLNLL 207


>gi|313768210|ref|YP_004061890.1| hypothetical protein MpV1_007c [Micromonas sp. RCC1109 virus MpV1]
 gi|312598906|gb|ADQ90930.1| hypothetical protein MpV1_007c [Micromonas sp. RCC1109 virus MpV1]
          Length = 443

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 20/187 (10%)

Query: 7   MRKIVFDIETTGL-------------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53
           M+ I FD ET+GL                + R + + A       +   TF   + PN  
Sbjct: 4   MQYIAFDFETSGLPEGRRPVTPETLHQFDSCRAVSLSAARFSSRGRLVDTFDAIVYPNDF 63

Query: 54  KNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-- 110
           + S  ++ +HGIT +   ++   F+ +F +F  F   +    +AHNAKFD   + +E+  
Sbjct: 64  QISQGSIDVHGITQQRAEREGRPFTEVFLDFVRFIGPRTTTMVAHNAKFDTSVLRSEMIR 123

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSD 169
            R++   ++      T+ + R +       L  L ++ +G    +   H +L D      
Sbjct: 124 HRLDLHLIENLNFRCTMELYRERF-LKPIKLGVLYEQIFGQPFEN--AHNSLADCIACGR 180

Query: 170 VYIKMMV 176
           VY  ++ 
Sbjct: 181 VYPYIIG 187


>gi|113969858|ref|YP_733651.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4]
 gi|113884542|gb|ABI38594.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4]
          Length = 228

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 16/193 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +  D+E TGLD  ND+I+ IG V + + +    + Q  L    + +  ++  
Sbjct: 35  LPISRAPLMAMDLEMTGLDPLNDQILSIGLVPIENGTIPLGSAQQKLV-QIQGSVGQSAT 93

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI D  L +  S     + F      +    +AH++  D  F+  ++  I    +   
Sbjct: 94  IHGILDNHLTEAVSIEEAMAWFVS--QTRGHILVAHHSPLDCRFLQQDILSIYHQAI-VI 150

Query: 122 RIIDTLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDTL + + +     +        L +  +RYG+ I     H AL D+    ++ +  
Sbjct: 151 PAIDTLLLEKHRLLREHSVLKEGSLRLGACRERYGLPIYG--AHSALTDALACGELLLAQ 208

Query: 175 ---MVGGSQINFG 184
              M G  ++  G
Sbjct: 209 VASMGGAEELKVG 221


>gi|15598428|ref|NP_251922.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO1]
 gi|107102762|ref|ZP_01366680.1| hypothetical protein PaerPA_01003829 [Pseudomonas aeruginosa PACS2]
 gi|218890575|ref|YP_002439439.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa LESB58]
 gi|254236194|ref|ZP_04929517.1| hypothetical protein PACG_02159 [Pseudomonas aeruginosa C3719]
 gi|254241920|ref|ZP_04935242.1| hypothetical protein PA2G_02641 [Pseudomonas aeruginosa 2192]
 gi|9949354|gb|AAG06620.1|AE004746_4 probable nuclease [Pseudomonas aeruginosa PAO1]
 gi|126168125|gb|EAZ53636.1| hypothetical protein PACG_02159 [Pseudomonas aeruginosa C3719]
 gi|126195298|gb|EAZ59361.1| hypothetical protein PA2G_02641 [Pseudomonas aeruginosa 2192]
 gi|218770798|emb|CAW26563.1| probable nuclease [Pseudomonas aeruginosa LESB58]
          Length = 208

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 82/174 (47%), Gaps = 11/174 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I  D+ETT LD +   I+ IGAV +           ++++ P       E++++H +   
Sbjct: 33  ISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPP-SLDAESIRIHKLRRA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127
            L+ +        +   F  ++    + +   FDV  +N  L++ +++   +PS  I +L
Sbjct: 92  DLEGQLQLEQALRQVLAFIGDR--PLLGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISSL 149

Query: 128 SIAR--RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              +  R  P +  DL  ++L +   + +S R  H AL D+  ++ ++++++ G
Sbjct: 150 YHRKVSRHFPDAHIDLRFDTLARALDVPVSGR--HTALGDAQAVALMFMRLLKG 201


>gi|257466613|ref|ZP_05630924.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917768|ref|ZP_07914008.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691643|gb|EFS28478.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563]
          Length = 186

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 23/187 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGI 65
           M+ +  D ETTGL  ++  II++ A+  +D  +   T  ++  P      S EAL +   
Sbjct: 1   MKILYLDTETTGLTYRS-TIIQLAAIVEIDG-EIKETINLYCAPFPDSDISEEALSITKF 58

Query: 66  TDEFL--KDKP-----SFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDP 117
           T E +   D P     +F+ I  ++ D +N+ +   +  HN KFD+  +     R N+  
Sbjct: 59  TREEIFQFDSPQVVCQTFTQILGKYVDKYNKNDKFIVIGHNVKFDLDMLRNWAYRCNERF 118

Query: 118 ----LDPSRIIDTLSIARRKHPSSR------NDLNSLCKRYGITISHRSKHGALLDSHLL 167
               +D     DTL+  +      +      N L +LC+ + I + +   H AL D+   
Sbjct: 119 IASYIDFKNEFDTLAFTKCLKILGKLPQTENNKLETLCQAFQIPLEN--AHNALADTIAA 176

Query: 168 SDVYIKM 174
            D+Y  +
Sbjct: 177 KDLYHYL 183


>gi|229488668|ref|ZP_04382534.1| DNA polymerase III subunit epsilon [Rhodococcus erythropolis SK121]
 gi|229324172|gb|EEN89927.1| DNA polymerase III subunit epsilon [Rhodococcus erythropolis SK121]
          Length = 226

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 9/159 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +      FD+ETTG D    RI+    V ++D S        +L   G      A 
Sbjct: 1   MSSWSDRPICAFDLETTGRDPSTARIVS-ACVAVIDGSSVETR--TWLLDPGVDIPAGAS 57

Query: 61  KLHGITDEFLK-DKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKD 116
            +HGI+ EF       +S  + E  +  +    ++   +A NA +D+  ++AE  RI K 
Sbjct: 58  AVHGISTEFAAQHGQDYSEGYEEIREALHNSWARDHAVVAFNASYDLTVMHAEGLRIGKP 117

Query: 117 PLDPSRIIDTLSIARRK--HPSSRNDLNSLCKRYGITIS 153
              P  +ID   I R        +  L ++C+ YGI++ 
Sbjct: 118 AFVPGLVIDPYVIDRAMDTFRKGKRTLAAVCEHYGISLE 156


>gi|254383630|ref|ZP_04998980.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
 gi|194342525|gb|EDX23491.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
          Length = 241

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 13/163 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M R  +     FD ETTG+D + DRI+    +         R+ +  + P G    P A 
Sbjct: 1   MTRWYEGPLAAFDTETTGVDVEQDRIVSAALIVQECAGGRVRSTRWLVNP-GIPVPPGAT 59

Query: 61  KLHGITDEFL-KDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKD 116
           ++HG+TD+ L ++    + +  E      EQ       +  NA FD+  ++ EL+R    
Sbjct: 60  EVHGLTDDHLQRNGRWPAPVVEEIARALGEQLVAGRPVVVMNAPFDLTLLDRELRRHRAS 119

Query: 117 PL------DPSRIID--TLSIARRKHPSSRNDLNSLCKRYGIT 151
            L       P  ++D   L     ++   R  L  LC  YGI 
Sbjct: 120 SLARYLDNRPLTVLDPRVLDKHLDRYRKGRRTLTDLCAHYGIE 162


>gi|313206116|ref|YP_004045293.1| DNA polymerase iii, alpha subunit [Riemerella anatipestifer DSM
           15868]
 gi|312445432|gb|ADQ81787.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer DSM
           15868]
 gi|315022923|gb|EFT35946.1| DNA polymerase III alpha subunit [Riemerella anatipestifer RA-YM]
 gi|325336439|gb|ADZ12713.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer RA-GD]
          Length = 1550

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 79/219 (36%), Gaps = 24/219 (10%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL    +          R+++I      +           + P G      
Sbjct: 2   YLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDEEGNLVENQDYIIKPEGYDIPFN 61

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
           A ++HGI+ +   ++      I  EF +    +      HN +FD   + AE  R + + 
Sbjct: 62  ATRIHGISTKMAHEQGRDLVEILEEFKEVLK-KTKIVAGHNIEFDYNIVGAEFYRKSIEN 120

Query: 117 PLDPSRIIDTLSIARRK--HPSSRN------DLNSLCKR-YGITISHRSKHGALLDSHLL 167
            L+     DT+++          RN       L  L ++ YG        H A  D +  
Sbjct: 121 VLEKIPSADTMALGTDYCQLGGGRNGKYKPPKLEELYEKLYGEKFD--EAHNAAADVNAT 178

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
           + V+ +MM  G       K +E++    ++     I   
Sbjct: 179 AQVFFEMMRVGIIPAETLKISEEQLKVYQENHPSPIRPF 217


>gi|16763100|ref|NP_458717.1| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29144582|ref|NP_807924.1| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|56414696|ref|YP_151771.1| exonuclease [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|197363623|ref|YP_002143260.1| exonuclease [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
 gi|213051586|ref|ZP_03344464.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213427175|ref|ZP_03359925.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213855476|ref|ZP_03383716.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|25513436|pir||AI1038 probable exonuclease STY4637 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505408|emb|CAD06758.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29140220|gb|AAO71784.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56128953|gb|AAV78459.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095100|emb|CAR60646.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 194

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 71/184 (38%), Gaps = 21/184 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL   +  I+EI  ++   +   N      + P  +    EA+ +HGIT+E
Sbjct: 20  YLFIDTETTGL-GDDAEIVEICIIDSHGFIMLN----TLIKPT-KPIPDEAIAIHGITNE 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+++ I     + F      ++ +NA FD+  I        +       ++   S
Sbjct: 74  MVAFAPAWTDICGAVEELFRRFG--FVIYNADFDLRLIRQTYALNERPSEGAPWMLAAHS 131

Query: 129 -IARRKHPSSR-----------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             A + +   R           + L       G+ +  +  H AL D  +   +   +  
Sbjct: 132 VCAMKLYAEYRGEPGRFNGYKWHKLVDAAAHEGVVVEGK-AHRALADCKMTLGLVRALAK 190

Query: 177 GGSQ 180
           GG++
Sbjct: 191 GGAK 194


>gi|330004210|ref|ZP_08304836.1| exonuclease [Klebsiella sp. MS 92-3]
 gi|328536727|gb|EGF63048.1| exonuclease [Klebsiella sp. MS 92-3]
          Length = 180

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 68/165 (41%), Gaps = 6/165 (3%)

Query: 12  FDIETTGLDS-KNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            DIETTGLD     +IIEI  V    + S+      +   P  R    +A  +H I+ E 
Sbjct: 7   IDIETTGLDVYSGHKIIEIALVSYELETSRKINEVSLRFNP-RRNIDAKAQAVHHISLEM 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLS 128
           L D P F    +         +  W+AHN + FD+ FI  +++    + L    +IDT+ 
Sbjct: 66  LADCPLFEDKAASLAKALAAAD-VWVAHNGRQFDIPFITKQMRDCGVE-LIQRPLIDTMD 123

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                       L  L    G        HGAL D+ L+   +IK
Sbjct: 124 ARWACESGKIPRLQELAVAMGFVYDEEKAHGALYDTDLMMQCFIK 168


>gi|167554101|ref|ZP_02347842.1| YacC [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205321613|gb|EDZ09452.1| YacC [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
          Length = 287

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 23/172 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD+   + +EIG V         R F+  L P      P A  +HGI+DE
Sbjct: 105 PVFLDTETTGLDA-GAQALEIGLVNARG----ERIFETRLKPTVA-IDPAAAAVHGISDE 158

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   PS+  I  +       +    +  NA+FD   +       N    DP+  +D+L+
Sbjct: 159 DLVRAPSWPDIAQQLQHHIGRR--PLVIFNAEFDTRILKQTAAAHN----DPASWLDSLT 212

Query: 129 IARRKH-------PSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +            P++R     L+    + G++      H A+ D+ + + V
Sbjct: 213 VYCAMWLAAGYYGPTNRYGTISLSGAVSQAGLSWIGE-AHSAVTDAVMTAQV 263


>gi|294506958|ref|YP_003571016.1| DNA polymerase III polC-type [Salinibacter ruber M8]
 gi|294343286|emb|CBH24064.1| DNA polymerase III polC-type [Salinibacter ruber M8]
          Length = 258

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 70/176 (39%), Gaps = 11/176 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA---VELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +   + FD+E TG D +  RII+IG    V   D +  + T  V + P   +       L
Sbjct: 14  ERPLVFFDLEATGTDPQAARIIQIGMQRFVPSEDGAALDETIDVLVDPE-EEIPAAVTDL 72

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPS 121
            G++ + ++  P   +            +A+   +NA  +D+  + AE +R  +    P 
Sbjct: 73  TGLSPDAVRQAPPLGAHLDRIAPLLA--DADLAGYNALAYDIPLLQAEFERHGRTLPGPD 130

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMV 176
             +  L   R +       L++L +RY G  +     H AL D      V  + + 
Sbjct: 131 DRV-VLDPYRLEQVLRPRTLSALYERYTGDALDD--AHDALSDVEAAGRVLQRQLA 183


>gi|84488969|ref|YP_447201.1| 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091]
 gi|84372288|gb|ABC56558.1| predicted 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091]
          Length = 445

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 72/169 (42%), Gaps = 11/169 (6%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR  +V D+E    + + + I  IG + + + +   R +   + P    ++   +++  I
Sbjct: 1   MRDYVVMDLE--NPNFRQNSICAIGVMLIRNNNVVERKYS-LINPEDTFDN-INIQITKI 56

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
               +K  P+    +SE   + +  N   + HN  +D+  +   LQR + + +       
Sbjct: 57  APHMIKQSPTLPEYWSEISSWLS--NNVIVGHNITYDLRVLTKSLQRYDLE-VPEFNYCC 113

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           TL+ +R+        L ++ K+  I     + H A+ D+    +++  +
Sbjct: 114 TLTQSRKNLDLPSYKLENIAKKLHIIY---NPHNAIEDARAAYELFEYI 159


>gi|313681812|ref|YP_004059550.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154672|gb|ADR33350.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 232

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 26/178 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ETTGL++K DRI  +G +        +      + P G+K  P +  +H IT+E 
Sbjct: 2   IFLDTETTGLEAK-DRICALGMITE------DEAHYELINP-GKKIPPSSSAIHHITNEM 53

Query: 70  LKDKPSFSSIF-SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +KD P+F+    +E     N      ++HNA F++  +  E            RIIDTL 
Sbjct: 54  VKDAPAFAESLSAEKLKLLNTPETILVSHNAPFELDMLQKE------GLAWQGRIIDTLK 107

Query: 129 IARRKHPS--------SRNDLNSLCKRYGITISHR---SKHGALLDSHLLSDVYIKMM 175
            ++              R +L    +   +   H      H AL D+     V   ++
Sbjct: 108 CSKSLMDDLEGYALQFLRYELRLYREEANVFKEHEIPIVPHHALSDALHTKMVLEYLL 165


>gi|238895034|ref|YP_002919768.1| ribonuclease T [Klebsiella pneumoniae NTUH-K2044]
 gi|238547350|dbj|BAH63701.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 197

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L      +   + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQP 72

Query: 58  EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109
           EAL  +GI         + +  +  +IF        E +      +AHNA FD  F    
Sbjct: 73  EALAFNGINPHDPQRGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTA 132

Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154
            +R    ++P  P    DT +++       +  L+  C   G+    
Sbjct: 133 AERAGLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACIAAGMPFDG 177


>gi|67459827|ref|YP_247450.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2]
 gi|67005360|gb|AAY62285.1| DNA polymerase III, epsilon subunit-like protein [Rickettsia felis
           URRWXCal2]
          Length = 377

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 62/169 (36%), Gaps = 21/169 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSK--TNRTFQVFLCPNGRKNSPEALKLHG 64
           I  D ETTGL  + D+I+E+G V+     D            +  P  +       +L G
Sbjct: 126 IFLDTETTGLSHEKDKILELGMVKFEYTEDGRIYQIVDELNQYQDPQ-QPIPLRITELTG 184

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITDE ++ K       ++F +  +      IAHNA FD  F +     +       +   
Sbjct: 185 ITDEMVQGKAIDQEAVTQFLENVD----IIIAHNASFDRPFFDKMFLHL----PPKAWGC 236

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS----HLLSD 169
               I  +      + L  L  +Y         H A+ D     HLL+ 
Sbjct: 237 SRADIDWKAEKIESHKLEYLAYKYNFFYEG---HRAVTDCLAGLHLLAQ 282


>gi|312868848|ref|ZP_07729034.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus oris
           PB013-T2-3]
 gi|311095588|gb|EFQ53846.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus oris
           PB013-T2-3]
          Length = 282

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 72/170 (42%), Gaps = 10/170 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITD 67
            +  D+ET+GL+  + +II IGAV+ +    T  TF   +    G+K   +  ++ G+ +
Sbjct: 113 FVSLDLETSGLNPSSAQIISIGAVKRVAGHTT--TFYRLVKLESGKKVPVDIARMTGLNN 170

Query: 68  EFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           E L  +         +   F   +    + +N  FD  F+   + R      + ++++D 
Sbjct: 171 ERLAAEGVLVKEALIDLQAF--TKGLPIVGYNLLFDERFLQTAVIRTGIVQFN-NKMVDV 227

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L   +          L ++  +YG+       H +L D+    ++  K++
Sbjct: 228 LPYVKTTDKFCDNYHLTTVLAKYGVKNE--QPHNSLADATATMELVDKLI 275


>gi|114047088|ref|YP_737638.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7]
 gi|113888530|gb|ABI42581.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7]
          Length = 228

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 16/193 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +  D+E TGLD  ND+I+ IG V + + +    + Q  L    + +  ++  
Sbjct: 35  LPISRSPLMAMDLEMTGLDPLNDQILSIGLVPIENGTIPLGSAQQKLV-QIQGSVGQSAT 93

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI D  L +  S     + F      +    +AH++  D  F+  ++  I    +   
Sbjct: 94  IHGILDNHLTEAVSIEEAMAWFVS--QTRGHILVAHHSPLDCRFLQQDILSIYHQVV-VI 150

Query: 122 RIIDTLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             IDTL + + +     +        L +  +RYG+ I     H AL D+    ++ +  
Sbjct: 151 PAIDTLLLEKHRLLREHSVLKEGSLRLGACRERYGLPIYG--AHSALTDALACGELLLAQ 208

Query: 175 ---MVGGSQINFG 184
              M G  ++  G
Sbjct: 209 VASMGGAEELKVG 221


>gi|157961523|ref|YP_001501557.1| exonuclease RNase T and DNA polymerase III [Shewanella pealeana
           ATCC 700345]
 gi|157846523|gb|ABV87022.1| Exonuclease RNase T and DNA polymerase III [Shewanella pealeana
           ATCC 700345]
          Length = 228

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 86/182 (47%), Gaps = 15/182 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKL 62
            +++  +  D+E TGL+S+ D+I+ IG + + +   + + +  + +  +G  +  ++  +
Sbjct: 40  LSQLPLMAVDLEMTGLNSQFDQILSIGLIPIRNGLLQVSHSKHLLVSIDG--SVGDSAVI 97

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI D  L    S     + F +    Q    +AH+A  D+ F+ AE+QR     +    
Sbjct: 98  HGIVDNQLTQAVSPKLAMAWFLE--QTQGHVLVAHHAPLDLCFLKAEIQRCYGQTI-QFV 154

Query: 123 IIDTLSIARRKH-------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            IDT+++ +R+              L++  +RYG+ +   + H A +D+    ++ +  +
Sbjct: 155 AIDTMAVEKRRLLMQIDVIKEGSLRLDACRQRYGLPVY--AAHNAAIDALACGELLLAQI 212

Query: 176 VG 177
             
Sbjct: 213 AA 214


>gi|226308478|ref|YP_002768438.1| exonuclease [Rhodococcus erythropolis PR4]
 gi|226187595|dbj|BAH35699.1| putative exonuclease [Rhodococcus erythropolis PR4]
          Length = 241

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 9/159 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +      FD+ETTG D    RI+    V ++D S        +L   G     +A 
Sbjct: 16  MSSWSDRPICAFDLETTGRDPSTARIVS-ACVAVIDGSNVETR--TWLLDPGVDIPADAS 72

Query: 61  KLHGITDE-FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKD 116
            +HGI+ E   +   +++  + E  D  +    ++   +A NA +D+  ++AE  RI K 
Sbjct: 73  AIHGISTEYAARHGQNYAEGYEEIRDALHNSWARDHAVVAFNASYDLTVMHAEGLRIGKP 132

Query: 117 PLDPSRIIDTLSIARRK--HPSSRNDLNSLCKRYGITIS 153
              P  +ID   I R        +  L ++C+ YGI++ 
Sbjct: 133 AFVPGLVIDPYVIDRAMDTFRKGKRTLAAVCEHYGISLE 171


>gi|262199242|ref|YP_003270451.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262082589|gb|ACY18558.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 308

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 6/139 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +VFD+ETTG D + D+IIE+     L     NR ++  + P+     P A ++HGI+ + 
Sbjct: 7   LVFDVETTGTDRRRDQIIELCVQFGLGDDAPNRVWR--IRPDVA-IEPAAQEVHGISMDD 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L + P F  +  E  + F       + +N  FD+G + AE +R+ +         D +  
Sbjct: 64  LAECPRFPEVADELRELFASA-TVLVGYNVSFDIGMLQAEYERLGQ--FLDLGGKDVVDA 120

Query: 130 ARRKHPSSRNDLNSLCKRY 148
            R         L    KR+
Sbjct: 121 FRLWQQCEPRSLQHAHKRF 139


>gi|305665420|ref|YP_003861707.1| DNA polymerase III subunit alpha [Maribacter sp. HTCC2170]
 gi|88710175|gb|EAR02407.1| DNA polymerase III alpha subunit [Maribacter sp. HTCC2170]
          Length = 1478

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 82/235 (34%), Gaps = 21/235 (8%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + +          R I+I      +      +    + P+G     +
Sbjct: 2   YLIFDTETTGLPKRWNAPITDTDNWPRCIQIAWQLHDEMGNLVESQDYLVQPDGFNIPYD 61

Query: 59  ALKLHGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
           A ++HGI+ E    +    + +  +F +    +    +  N  FDV  + AE  R+  + 
Sbjct: 62  AEQIHGISTELAAQEGVPLAEVLEKF-NVAMSKTKFIVGQNVGFDVNIMGAEFHRMGVEN 120

Query: 117 PLDPSRIIDTLSIARRKH------PSSRNDLNSLCK--RYGITISHRSKHGALLDSHLLS 168
           PL    ++DT +               +  L +L +   Y         H A  D    +
Sbjct: 121 PLQELPVLDTCTEESALLCQIPGGRGGKFKLPTLTELHEYLFNAPFAEAHNATADVEATT 180

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
             +++++  G           D F    +     I L+        + +K+  D 
Sbjct: 181 RCFLELVRRGHYTIEQLDVQPDYFKNFSEVHPQTIELIGLKHINLKKASKKIADA 235


>gi|146284212|ref|YP_001174365.1| exonuclease [Pseudomonas stutzeri A1501]
 gi|145572417|gb|ABP81523.1| exonuclease [Pseudomonas stutzeri A1501]
 gi|327482571|gb|AEA85881.1| exonuclease [Pseudomonas stutzeri DSM 4166]
          Length = 235

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 11/186 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60
           +   + R +V D+ETTGL  K D +I IGAV + D +   ++ F+  LC   + N  E++
Sbjct: 33  VPLRQQRLVVLDLETTGLHLKRDLVIAIGAVVIEDGAIDYSQQFECTLCRQVKVN--ESV 90

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI    L +    +     F +F     +  +A +A FD   +   L+      L+ 
Sbjct: 91  LIHGIAPSELANGLPPAEALLSFMEF--AAGSIVLAFHAPFDQRMLGRALKNELGYSLE- 147

Query: 121 SRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +  +D   +A    P     R  L+     + I I  R  H A  D+   +++ + ++  
Sbjct: 148 NSFLDVADLAPMLFPEAMIHRGSLDHWLDYFNIHIPQR--HNASADAMATAEIALILLNR 205

Query: 178 GSQINF 183
             +I  
Sbjct: 206 AQRIGL 211


>gi|172058850|ref|YP_001815310.1| exonuclease RNase T and DNA polymerase III [Exiguobacterium
           sibiricum 255-15]
 gi|171991371|gb|ACB62293.1| Exonuclease RNase T and DNA polymerase III [Exiguobacterium
           sibiricum 255-15]
          Length = 190

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 9/167 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET   +S++  I   G   L +        QV + P         +++HGI    
Sbjct: 6   LAIDFETANRNSRS--ICAFGWSVLSEGRVVTSE-QVLINPE-EDFDAGNIRVHGIRPSD 61

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           + D P+          F   + AE + AHNA FD+G +   +Q+ +   +   +   T+ 
Sbjct: 62  VWDAPALPEAMEAHGLFKLIEKAELVIAHNAAFDMGALQKAVQKYDLYQMPTFQYGCTVK 121

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++R+ +P    + LN++ +   ++  H   H A  D+++ + +   M
Sbjct: 122 LSRKLYPWLPNHKLNTMAEFLNVSFKH---HDAKEDAYICALLLQDM 165


>gi|152988293|ref|YP_001347274.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PA7]
 gi|150963451|gb|ABR85476.1| probable nuclease [Pseudomonas aeruginosa PA7]
          Length = 208

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 79/174 (45%), Gaps = 11/174 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I  D+ETT LD +   I+ IGAV +           ++++ P       E++++H +   
Sbjct: 33  ISLDLETTSLDPRRADILSIGAVLVRRGKLVLGERLELYVEPPP-SLDAESIRIHKLRRA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDTL 127
            L+ +            F  ++    + +   FD+  +N  L QR +    +P+  + +L
Sbjct: 92  DLEGQLQLDEALRRLLAFIGDR--PLLGYYLSFDIAVLNRHLRQRFDLQLRNPTIEVSSL 149

Query: 128 SIAR--RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              +  R  P +  DL  ++L +   + +S R  H AL D+  ++ ++++++ G
Sbjct: 150 YHRKVSRHFPDAHLDLRFDTLARALDVPVSGR--HTALGDAQAVALMFMRLLKG 201


>gi|302522606|ref|ZP_07274948.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
 gi|302431501|gb|EFL03317.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
          Length = 239

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 88/229 (38%), Gaps = 30/229 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG D + DRI+    + L        T    L P G +   EA  +HGI     +
Sbjct: 11  FDLETTGTDIEQDRIVTAAVIRLDASGAVAHTRTWLLDP-GVEIPAEATAIHGIPTARAR 69

Query: 72  --DKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPL------DP 120
               P+  ++  E  +    +       +  NA++D+  ++ E +R     L      +P
Sbjct: 70  ADGAPARGAVA-EITEALAAELRAGTPLVVMNARYDLSLLDRECRRHGVPALAEMLGTEP 128

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG- 177
           + +ID L + +   ++      L +LC  YG+ +   + H A  D+   + +  + +   
Sbjct: 129 APVIDPLVLDKHADRYRRGSRVLAALCAHYGVRLD--TAHDARSDALA-ATLLARSLGAH 185

Query: 178 -----------GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
                        ++       +    +E  +     ++++   P+  R
Sbjct: 186 HPTLGTLPPTDLHRLQIDAAARQSASLQEYLRRTKPDAVVEGAWPVIPR 234


>gi|321223519|gb|EFX48584.1| Putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 194

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 71/184 (38%), Gaps = 21/184 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL   +  I+EI  ++   +   N      + P  +    EA+ +HGIT+E
Sbjct: 20  YLFIDTETTGL-GDDAEIVEICIIDSHGFIMLN----TLIKPT-KPIPDEAIAIHGITNE 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+++ I     + F      ++ +NA FD+  I        +       ++   S
Sbjct: 74  MVAFAPAWTDICGAVEEIFRRFG--FVIYNADFDLRLIRQTYALNERPSEGAPWMLAAHS 131

Query: 129 -IARRKHPSSR-----------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             A + +   R           + L       G+ +  +  H AL D  +   +   +  
Sbjct: 132 VCAMKLYAEYRGEPGRFNGYKWHKLVDAAAHEGVVVEDK-AHRALADCKMTLGLVRALAK 190

Query: 177 GGSQ 180
           GG++
Sbjct: 191 GGAK 194


>gi|270158349|ref|ZP_06187006.1| ribonuclease T [Legionella longbeachae D-4968]
 gi|289163409|ref|YP_003453547.1| ribonuclease T [Legionella longbeachae NSW150]
 gi|269990374|gb|EEZ96628.1| ribonuclease T [Legionella longbeachae D-4968]
 gi|288856582|emb|CBJ10387.1| ribonuclease T [Legionella longbeachae NSW150]
          Length = 205

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 82/197 (41%), Gaps = 19/197 (9%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NG 52
           M  KN+ R    +V D+ET G++ + + ++E+  V +L   +      +++   + P +G
Sbjct: 9   MNIKNRFRGFLPVVVDVETAGVNPQKNALLEMCIVLILMDDQGKFYRGKSYFEHILPFSG 68

Query: 53  RKNSPEALKLHGITD-EFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVG 104
            +  P++L+ + I   + L+      +               F  Q A  + HNA FD+ 
Sbjct: 69  SELDPKSLEFNQIDPFQPLRFAIDEKTALENLFHPIFAALKIFQCQRAVLVGHNAWFDLL 128

Query: 105 FINAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           FI   ++R   K P       DT ++    +   +  L    +  GI    +  H A+ D
Sbjct: 129 FIKEAIKRTGVKSPFHAFTCFDTATLGGFIY--GQTVLAKAAQAAGIAFDAQEAHSAIYD 186

Query: 164 SHLLSDVYIKMMVGGSQ 180
           +   +D++  M     Q
Sbjct: 187 AEKTADLFCHMANLWQQ 203


>gi|218457859|ref|YP_002418864.1| putative DEDDH exonuclease [Pseudomonas phage SN]
 gi|218379127|emb|CAT99715.1| putative DEDDH exonuclease [Pseudomonas phage SN]
          Length = 184

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 76/178 (42%), Gaps = 16/178 (8%)

Query: 7   MRKIVFDIETTGLD-------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   V+D ETTGL         K  RIIE   V   D  K     + F+C  G       
Sbjct: 1   MIFAVWDTETTGLPFHQRVSLRKQPRIIEFAGVIT-DGEKILDEVE-FICNPGIVIEEII 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDP 117
            K+ G+ +E L   PSF     +  DFF+  +A  IAHN  FD   +  +L R  +  + 
Sbjct: 59  TKITGLKNEDLVKHPSFLDQRHKVRDFFSRADAN-IAHNLPFDKFMLTCDLARGKLGLEE 117

Query: 118 LD-PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++ PS  I T+  + R     R  L  L + Y      +  H AL D  LL +V  +M
Sbjct: 118 VNFPSLDICTVEESARLF-GHRMRLQHLYEHYCGPYVQK--HRALDDVRLLHEVCKRM 172


>gi|309797899|ref|ZP_07692280.1| exonuclease [Escherichia coli MS 145-7]
 gi|308118507|gb|EFO55769.1| exonuclease [Escherichia coli MS 145-7]
          Length = 182

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 12  FDIETTGLDS-KNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            DIE+TGLD     +IIEI  V+  ++      +F +   P  R   P+A  +HGI+ E 
Sbjct: 6   VDIESTGLDFLSGHKIIEIAMVKYEIETQTMVDSFVMRFNP-RRSIDPKAQAVHGISLED 64

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L  +P  +   S    + +  +  WIAHN   FD+ FI  EL+      L    +IDTL 
Sbjct: 65  LAAEPLLADHASSVASYLSSSD-IWIAHNGEAFDIPFIRHELKSYGFS-LPDIPLIDTLF 122

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                    R  L  L    G    H   H AL D++L+   + K
Sbjct: 123 SLWATEDGKRPRLEELAFSLGFIYDHAKAHSALYDTNLMMQCFFK 167


>gi|190015910|ref|YP_001965118.1| putative exonuclease [Rhodococcus sp. NS1]
 gi|114796750|gb|ABI79343.1| putative exonuclease [Rhodococcus sp. NS1]
          Length = 238

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 26/205 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            + D+ET+GLD     IIEI  ++              +  +  +  P A+++HG+T   
Sbjct: 52  CIVDVETSGLD---GSIIEIAVIDAATGEVL---LNTLVDCSPVEIEPGAVEVHGLTATD 105

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLS 128
           L   P +S +F E       +N   +A+NAKFD G +  + +R   DP            
Sbjct: 106 LAGAPRWSEVFPELAA--ATKNRVVLAYNAKFDRGRVLHDCRREGIDPAHLAEPARWQCV 163

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSK----HGALLDSHLLSDVYIKMMVGGSQINFG 184
           +ARR            C+  G+ +  R +    H AL D      V ++M+  G     G
Sbjct: 164 MARR------------CEALGLGLDGRLRLGGGHRALADVRAT-RVVLRMLADGRPDTDG 210

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRD 209
                 R  +E ++   +     R 
Sbjct: 211 SAALAIRAREEAREVAVDSRSPGRR 235


>gi|182417780|ref|ZP_02949096.1| putative exonuclease [Clostridium butyricum 5521]
 gi|237667945|ref|ZP_04527929.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182378504|gb|EDT76035.1| putative exonuclease [Clostridium butyricum 5521]
 gi|237656293|gb|EEP53849.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 975

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 12/172 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  DIETTGLD  +  IIEIGA++  D + T  TF+  + P GR          G++ E 
Sbjct: 13  IYLDIETTGLDETSSEIIEIGAIKFKDNTIT--TFETLIRPRGRVPIGIYNLCTGLSKEE 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   PS  ++      F   ++   I HN  F+  F    L +I       + I+D++ +
Sbjct: 71  LYSAPSLGNVRESLSQFL--EDLPLICHNGNFEKKFFRYHLPQIK------NTIMDSMEL 122

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           A    P  +  +LN+L K     ++    H  L DS     V   ++     
Sbjct: 123 AAILEPYHKEYNLNALMKTV-TDMNKNEIHRGLDDSINTLKVVNSLLCRLWS 173


>gi|146299070|ref|YP_001193661.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
 gi|146153488|gb|ABQ04342.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
          Length = 1510

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 82/230 (35%), Gaps = 21/230 (9%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R I+I      +  +        + P G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPITDSDNWPRCIQIAWQLHDEMGQLIEHQDYLVKPEGFNIPYD 61

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
           A ++HGI+ E    D  + + +  +F +    +    +  N  FDV  + AE  R+  + 
Sbjct: 62  AERIHGISTELAEADGITLAEVLEKF-NIALSKTKFIVGQNLGFDVNIMGAEFHRMGVES 120

Query: 117 PLDPSRIIDTLSI---ARRKHPSSR---NDLNSLCKRYGITISHR--SKHGALLDSHLLS 168
            +    ++DT +    +  + P  R     L +L + +           H A  D    +
Sbjct: 121 QMASMPVLDTCTEVTASLLQLPGGRGGKFKLPTLTELHSYLFDQPFAEAHNATADVEATT 180

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
             +++++             ++ F + +++      L+          + 
Sbjct: 181 RCFLELVRREVFTKEELDVPKEYFKEFQERNAEPFKLIGLKHINLKAASD 230


>gi|258406595|ref|YP_003199337.1| Exonuclease RNase T and DNA polymerase III [Desulfohalobium
           retbaense DSM 5692]
 gi|257798822|gb|ACV69759.1| Exonuclease RNase T and DNA polymerase III [Desulfohalobium
           retbaense DSM 5692]
          Length = 233

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 72/199 (36%), Gaps = 21/199 (10%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKL 62
            ++    V D E TGL  +   II IGAV +     K    F   +CP     +     +
Sbjct: 31  LSEFSFCVLDTELTGL-RRRHEIISIGAVRIEHLALKPLDRFYTEVCPKAW--TKTGTLI 87

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H I+ +  +D P    +  E   +     +  I HN   D+ F+    ++    PL    
Sbjct: 88  HRISPQQCQDAPKIGKVLPELIAYLGT--SLLIGHNIALDLQFLQKACKKHLGHPL-VHP 144

Query: 123 IIDTLSIARRKHPSS------------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            IDTL +AR    S                L  L + YG+       H A  D+   + +
Sbjct: 145 CIDTLRLARVYEESRWESYYDRFTLRVSYQLQELAQAYGLPC--FPAHNAASDALQTAYL 202

Query: 171 YIKMMVGGSQINFGFKTNE 189
           ++ ++    + +      E
Sbjct: 203 FVYLVHKLRETHPLVTLEE 221


>gi|220936287|ref|YP_002515186.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997597|gb|ACL74199.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sp. HL-EbGR7]
          Length = 240

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 70/185 (37%), Gaps = 19/185 (10%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           ++     D+ETTG+D++ D I+ IG V              ++    R  S  ++K H I
Sbjct: 47  EVPLAALDLETTGMDAERDVIVSIGIVPFDLRRIRPAEGYYWVVKPPRPLSEASIKFHRI 106

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   +   P   ++  E       +    + H    +  F++A + R  +       +ID
Sbjct: 107 THSEVAAAPDLDAVLDEVLAALAGR--VVVVHYRAIERPFMDAAVMR-RRGERCLFPVID 163

Query: 126 TLSIARRKHPSS--------------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           T+S+  R+                     L     RYG+     S H A +D+   ++++
Sbjct: 164 TMSLEARQQRGGLMQRIKGFFGVRPPSIRLADSRARYGLP--AYSSHHAKVDAMATAELF 221

Query: 172 IKMMV 176
           +  + 
Sbjct: 222 LAQVA 226


>gi|269963087|ref|ZP_06177423.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832219|gb|EEZ86342.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 217

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 68/185 (36%), Gaps = 25/185 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M + +    I+ D ETTGL S +  I+E  A+               + P       +A 
Sbjct: 11  MKKLSTENAIIIDTETTGLGS-DAEIVEFTAICADSGKVIVNE---LVKPTC-SIPADAT 65

Query: 61  KLHGITDEFLKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----- 114
            +HGIT+E +KD P F  +FS  F    N +    I +N+ FD   I   L +       
Sbjct: 66  AIHGITNEDVKDAPDFHLVFSNHFLPXLNGR--LIIIYNSDFDTRLIIQSLDKHCNAVYV 123

Query: 115 ---KDPLDPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALL 162
               D      +     +   +     N          L++ C +  + +S  + H AL 
Sbjct: 124 QSVHDLFFKFCVPQCAMLWYAEFFGVWNEHHEDYKWQSLSNACAQQSVDVSDLTAHRALA 183

Query: 163 DSHLL 167
           D  + 
Sbjct: 184 DCEMT 188


>gi|27367317|ref|NP_762844.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
 gi|27358886|gb|AAO07834.1| DNA polymerase III epsilon subunit [Vibrio vulnificus CMCP6]
          Length = 245

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 17/196 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              +++  +  D ETTGLD+K+D+I+ IG V+L        + +  L  +G     E+ +
Sbjct: 46  TPLHQVSFLALDFETTGLDAKHDKILSIGMVDLTLEGINLSSAEEILLNHGAYIKAESAR 105

Query: 62  LHGITDEFLKDKPSFSSIFS----EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           ++G+T + L+   S     S        F   Q    +AH+A  + GF+ A  Q+  +  
Sbjct: 106 INGLTPQALEQGCSLEQGCSLEQGMMRLFERAQGKVLLAHSAIIEQGFLQAFAQQHFQLA 165

Query: 118 LDPSRIIDTLSIARRK------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             P   +DTL I +R          S   L+ L + Y +   H   H A  D+   ++++
Sbjct: 166 KLPCHFVDTLQIEKRFSYAGKSGQRSSFQLDDLRRCYHLPDYH--SHSAASDALACAELF 223

Query: 172 I----KM-MVGGSQIN 182
           I    K+ +    Q+N
Sbjct: 224 IVQSKKLDLNKQRQLN 239


>gi|254507936|ref|ZP_05120065.1| exonuclease, RNase T and DNA polymerase III [Vibrio
           parahaemolyticus 16]
 gi|219549172|gb|EED26168.1| exonuclease, RNase T and DNA polymerase III [Vibrio
           parahaemolyticus 16]
          Length = 239

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 25/199 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
              +++  +  D ETTGLDS+ D II IG V   L+    N+     + P  ++   +++
Sbjct: 42  TPLDEVTFLAMDFETTGLDSEQDDIITIGTVPFTLNRVLINQAKHWTVRP-RKQLEEDSV 100

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKD--- 116
            +HGIT   + D P  S +F+E            + H  + +  F N A L RIN+    
Sbjct: 101 IIHGITHSDVLDAPDLSEVFAEILA--QMHGRIMVVHYQRIEREFFNRALLTRINEGIEF 158

Query: 117 PLDPSRIIDTLSIAR---------RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           P+  +  ++TL   +         +    +   L++   RYG+     + H AL D+   
Sbjct: 159 PVVDTMQLETLVQQKSNGGLLNRLKGRKPASVRLSASRSRYGLP--QYTPHHALTDAVAT 216

Query: 168 SDVYIKMMVGGSQINFGFK 186
           +++        +QI + ++
Sbjct: 217 AELL------QAQIAYHYE 229


>gi|326801307|ref|YP_004319126.1| DNA polymerase III subunit alpha [Sphingobacterium sp. 21]
 gi|326552071|gb|ADZ80456.1| DNA polymerase III, alpha subunit [Sphingobacterium sp. 21]
          Length = 1493

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 81/250 (32%), Gaps = 25/250 (10%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R ++I      D  +        + P+G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPITDTDNWPRCVQIAWQLHDDMGRLIEHQDYLVKPDGFNIPYD 61

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           A ++HGI+ E  L+       +  +F +   ++    +  N  FD+  +  E  R+    
Sbjct: 62  AERVHGISTELALEQGIDLVEVLEKF-NIALDKAKFIVGQNIGFDINIMGCEFHRMGIAT 120

Query: 118 LDPSRII---DTLSIARRKH----PSSRNDLNSLCK----RYGITISHRSKHGALLDSHL 166
               + +    T   A           +  L +L +     +G+  +    H A  D   
Sbjct: 121 TMGEKAVLDTCTEVTANLLQLPGGRGGKFKLPNLTELHAYLFGVPFA--EAHNATADVEA 178

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK 226
            +  +++++          +  ED F          I+ +          +         
Sbjct: 179 TTRCFLELIKKNIFTAAELQVQEDYFEVFRTNNPDPIAAVGLQHVNLKAASDAIRQRLKA 238

Query: 227 TIQTLGKNAI 236
              ++ +  +
Sbjct: 239 DQDSISQKDL 248


>gi|27379228|ref|NP_770757.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27352379|dbj|BAC49382.1| blr4117 [Bradyrhizobium japonicum USDA 110]
          Length = 223

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 78/177 (44%), Gaps = 8/177 (4%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALK 61
           R      +V D ETTGL+ + D ++ I A+++      T+  F+  + P+  +   EA+K
Sbjct: 26  RAPDDEFVVIDCETTGLNVRTDNVVAIAAIKIRGNRILTSARFEAIVHPDS-ELEAEAIK 84

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H +    ++  P    +   F  F   +    I +   FD+  ++  +  +    L   
Sbjct: 85  IHRLRRSDVEASPIVWKVLPGFLHFIGPR--PLIGYYVDFDIAMLDKYILPLVGIELPNE 142

Query: 122 RIIDTLSIARRKH----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           RI  +     RK+    P++  DL+     + + I    +H A  D+ + + +++++
Sbjct: 143 RIEVSRLYYERKYGNAPPNTEVDLSFAAILHDLCIPPLGQHDAFNDALMTAMMFLQL 199


>gi|306846211|ref|ZP_07478773.1| DNA polymerase III subunit epsilon [Brucella sp. BO1]
 gi|306273462|gb|EFM55323.1| DNA polymerase III subunit epsilon [Brucella sp. BO1]
          Length = 332

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 85/240 (35%), Gaps = 31/240 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRII 124
           TDE +K +    +I  +  D         IAHNA FD  F+    +   NK      + I
Sbjct: 134 TDEMVKGR----TIPRDELDALIAGADIIIAHNAGFDRPFLERFSIAFANKPWACSVKEI 189

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV----------YIKM 174
           D      R    ++  L  L    G +    + H A  D   L  V          + ++
Sbjct: 190 D---WTARGFEGTK--LGYLI---GQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAEL 241

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQT 230
           +    +           F  ++               R K  +T + + EL+   + ++T
Sbjct: 242 LKASQRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGENELEAELEYLRT 301


>gi|260779555|ref|ZP_05888445.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604364|gb|EEX30668.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 210

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 73/179 (40%), Gaps = 11/179 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLH 63
            K   +  D ETT LD K   ++ I A +++D      + F+V L    +     ++K+H
Sbjct: 26  QKGEYVSLDCETTSLDPKRAELVTIAATKIIDNRIITSQPFEVRLR-APQSLDSNSVKIH 84

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I    L D        ++   F   +    + ++ ++D   ++   +R    PL    I
Sbjct: 85  QIRHSDLADGIDEKQALTQLLAFVGNR--PLVGYHIRYDKKILDLACKRHLGFPLPNPLI 142

Query: 124 IDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             +     +      N      L ++CK   + +  +SKH AL D+   + V++++  G
Sbjct: 143 EVSQIYHDKLEKHLPNAYFDLSLEAICKH--LDLPMQSKHDALQDAISAALVFVRLTKG 199


>gi|157374891|ref|YP_001473491.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis
           HAW-EB3]
 gi|157317265|gb|ABV36363.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis
           HAW-EB3]
          Length = 228

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 85/180 (47%), Gaps = 15/180 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             D+E TGLD  +D+I+ IG + +     + +R  Q  +  NG  +  ++  +HGI D  
Sbjct: 45  AVDLEMTGLDPNSDQILSIGLIPIEKGLLQLSRAEQKLIQING--SVGQSATIHGIVDHQ 102

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   S  S    F D    +    +AH++  D+GF+   ++++  + +     IDTL++
Sbjct: 103 LQAGVSIDSAIEWFLD--RTRGKLLVAHHSPLDLGFLQVAIKQVTGESIKL-LAIDTLAL 159

Query: 130 ARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            R++    ++        L +   RYG+ +   + H AL+D+    ++ +  +     ++
Sbjct: 160 ERKRLLRKQDVLKEGTLRLGACRARYGLPVY--AAHNALVDALACGELLLAQVAALGDLH 217


>gi|260772908|ref|ZP_05881824.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260612047|gb|EEX37250.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 238

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 78/198 (39%), Gaps = 25/198 (12%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           ++  +  D ETTGLD   D II IG V         +  Q ++    +K    ++ +HGI
Sbjct: 45  EIEFVAMDFETTGLDENKDEIITIGLVPFTLQRVYLKRAQHWIVRPRQKLDEGSVIIHGI 104

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   +   P  S +F         +    +AH  K +  F++   +R   + ++   IID
Sbjct: 105 THSDIMHAPDLSEVFEALLTAL--EGKIVVAHYHKIEREFLDQAFKRRINEGIE-FPIID 161

Query: 126 TL----SIARRKHPSSRND----------LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           T+     I +R      N           L    +RYG+   +   H AL D+   +++ 
Sbjct: 162 TMQLEAEIQKRLTAGIWNKLRGKKPQSLRLGQARQRYGLPAYN--PHHALTDAIATAEL- 218

Query: 172 IKMMVGGSQINFGFKTNE 189
                  +QI   +  ++
Sbjct: 219 -----MQAQIAHHYSPDD 231


>gi|126174849|ref|YP_001050998.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS155]
 gi|160875861|ref|YP_001555177.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS195]
 gi|125998054|gb|ABN62129.1| Exonuclease, RNase T and DNA polymerase III [Shewanella baltica
           OS155]
 gi|160861383|gb|ABX49917.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS195]
 gi|315268052|gb|ADT94905.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS678]
          Length = 228

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 18/194 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60
           +  ++   +  D+E TGL+ + D+I+ IG V +        R  Q  +    R +  ++ 
Sbjct: 35  MPLSEAPLMAMDLEMTGLNPQQDQILSIGLVPIERGEIPLARAEQKLV--QIRGSVGQSA 92

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI D  L    +  +    F +         +AH+A  D  F+  +L  I    L  
Sbjct: 93  TIHGILDNHLVQAVTIEAAMGWFIN--QTYGRVLVAHHAPLDCRFLQQDLLAIYHQAL-V 149

Query: 121 SRIIDTLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI- 172
              IDTL + R +     +        L +  +RYG+ I   + H AL D+    ++ + 
Sbjct: 150 LPAIDTLMLERHRLLREHSVIKEGSLRLGACRERYGLPIY--TAHSALTDALACGELLLA 207

Query: 173 --KMMVGGSQINFG 184
               M G  Q+   
Sbjct: 208 QMAAMGGAGQLTVA 221


>gi|291614958|ref|YP_003525115.1| DNA polymerase III, subunit epsilon [Sideroxydans lithotrophicus
           ES-1]
 gi|291585070|gb|ADE12728.1| DNA polymerase III, epsilon subunit [Sideroxydans lithotrophicus
           ES-1]
          Length = 235

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 8/179 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D+ETTGL+   D +I IGAV +++       +F V L      +  E + +HGI+
Sbjct: 42  RVVVVDVETTGLNLITDTLISIGAVAVVNGRIALGDSFSVVLK-QQESSDKENILVHGIS 100

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIID 125
               +D          F ++  +  +  IA +  FD   I   +++ +          + 
Sbjct: 101 STAQRDGVDPVEALLTFLEYLGK--SRLIAFHVAFDETMIRRAMRQYLGLSFKHEWLDLA 158

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            +  A  +     +  L+    R+ I I   ++H AL D+   + ++   +      N 
Sbjct: 159 YVMPALNRSLMENHRVLDDWIGRFNIHIE--ARHNALADALATAQLFQIAISQARNKNI 215


>gi|313835961|gb|EFS73675.1| exonuclease [Propionibacterium acnes HL037PA2]
 gi|314927196|gb|EFS91027.1| exonuclease [Propionibacterium acnes HL044PA1]
 gi|314970727|gb|EFT14825.1| exonuclease [Propionibacterium acnes HL037PA3]
          Length = 184

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 23/175 (13%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  D ET     G+ +      ++  V++ D    +R     + P    +S E   LHG
Sbjct: 14  FVAVDFETANRMGGVSA-----CQLAMVKVHDGHIVDR-LNTLIRPPEGWDSFEFTYLHG 67

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+   + D P +++I      F +   A   AHNA FD        +      L PS   
Sbjct: 68  ISAADVVDAPLWANIADGVSQFVD--GATVYAHNAAFDSRVWRQLDEYFGTTTL-PSPFF 124

Query: 125 DTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +   A+R  P   N      LN+    Y +     + H A  D+   + +  ++
Sbjct: 125 CSYRTAQRLIPGLPNYKLPTVLNACAPTYRL-----NHHRADSDAEACALIVCQL 174


>gi|298207508|ref|YP_003715687.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus
           HTCC2559]
 gi|83850144|gb|EAP88012.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus
           HTCC2559]
          Length = 1454

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 83/236 (35%), Gaps = 23/236 (9%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL    +          R I+I      D  K      + + P+G     +
Sbjct: 2   YLIFDTETTGLPKNYNAPITDTDNWPRCIQIAWQLHDDMGKLVSHDDMLIKPDGFNIPYD 61

Query: 59  ALKLHGITDEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           + ++HGI+ E L DK          +F +    Q    +  N  FD+  + AE  R   D
Sbjct: 62  SEQIHGISTE-LADKNGVDLVDSLHKFNEALK-QTKFVVGQNVAFDINIMGAEFYRKGID 119

Query: 117 -PLDPSRIIDTLSIARRKH------PSSRNDLNSLCKRYGITISH--RSKHGALLDSHLL 167
            PL    ++DT +    +          +  L +L + +    +      H A  D    
Sbjct: 120 NPLQELPVLDTCTETTAELCKIPGGRGGKFKLPTLTELHQFLFNKAFNEAHNATADVEAT 179

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           +  +++++            + D F    ++    I L+        + +++    
Sbjct: 180 TRCFLELIRKRIYTAEELDVSPDYFENFSEENPQTIQLIGLKHINLKKASEQIRKA 235


>gi|55978361|ref|YP_145417.1| hypothetical protein TTHB178 [Thermus thermophilus HB8]
 gi|55773534|dbj|BAD71974.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 296

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 22/234 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP--EALKLHGI- 65
            +  D+E T  D     ++E+ AV+        R F  +L    R   P  E  +L GI 
Sbjct: 8   PVALDLEATSTDPSEAEVLEVAAVDGE-----GRVFHRYLA-TQRPLPPDHEVFQLTGIP 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRII 124
            +E+   K +      E   F   +    + HN  ++D+  +   L+     P      +
Sbjct: 62  YEEYEAKKVAPKEALEELLAFLGGR--PLLGHNLLRYDLPLLQRHLEEAGL-PRWQGEAL 118

Query: 125 DTLSIARRKHPSSR-----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           DTL +A    P+         L  L     +       H AL D+     V+ +++  G 
Sbjct: 119 DTLRLAHLLFPTPPGGLEGYRLGDLYAFL-LGRPLEGAHRALNDAQATLAVFHRLLDRGR 177

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           +       +        +  +P   L   D+ L   +   E D     ++  G+
Sbjct: 178 R---ALAQHPGLVRAWRELGLPEGHLFPEDEGLIKDLLAREADVEAFFVEKEGR 228


>gi|237722954|ref|ZP_04553435.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229447476|gb|EEO53267.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 198

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 68/169 (40%), Gaps = 10/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + K   +  +G V + +   TN+ +   + P     +     +HG+T +
Sbjct: 4   FAAIDFETA--NGKRTSVCSVGVVIVREGKITNKIY-RLIRPRPNYYTQWTTAVHGLTYD 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              +   F  +++E     +      +AHN+ FD G + A  +  +       +   T  
Sbjct: 61  DTMEVDEFPEVWAEIKPLID--GLPLVAHNSPFDEGCLRAVHELYDM-TYPDYKFYCTCR 117

Query: 129 IARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +R+        + L+++ +R G  + +   H AL D+   + + + ++
Sbjct: 118 TSRKVFGKDLPNHQLHTVAERCGYHLENH--HHALADAEACAQIALLII 164


>gi|260777448|ref|ZP_05886342.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607114|gb|EEX33388.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 239

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 29/201 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
                +  +  D ETTGLDS+ D II IG V   L+    N+     + P  ++ + E++
Sbjct: 42  TNLEDVTFLAMDFETTGLDSEQDDIITIGTVPFNLNRIFINQAHHWTVRP-RQQLAEESV 100

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLD 119
            +HGIT   + D P  S ++ +  +         + H  + +  F +  L+ RIN+    
Sbjct: 101 IIHGITHSDILDAPDLSEVYDQVLEQMA--GKIMVVHYQRIEREFFDRALKDRINEGIEF 158

Query: 120 PSRIIDTLS----IARRKHPSSRND----------LNSLCKRYGITISHRSKHGALLDSH 165
           P  ++DT+       +R H    N           L +   RYG+     + H AL D+ 
Sbjct: 159 P--VVDTMHLETLYQQRLHGGILNKVLGKKPDSVRLGASRARYGLPPY--TPHHALTDAV 214

Query: 166 LLSDVYIKMMVGGSQINFGFK 186
             +++        +QI + ++
Sbjct: 215 ATAELL------QAQIAYHYE 229


>gi|227494840|ref|ZP_03925156.1| DNA polymerase III subunit epsilon [Actinomyces coleocanis DSM
           15436]
 gi|226831292|gb|EEH63675.1| DNA polymerase III subunit epsilon [Actinomyces coleocanis DSM
           15436]
          Length = 232

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 16/184 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF-- 69
           FD+ETTG+D+  DRI+   + E+   S+      +   P G +    A+ +HGIT+E   
Sbjct: 11  FDLETTGVDTARDRIVT-ASYEVRCGSEVLEQVTLLFNP-GVEIPQSAIDVHGITNERAQ 68

Query: 70  ---LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL------DP 120
              L  +     + ++   + + + A  +  N +FDV  +  EL+R     +        
Sbjct: 69  AEGLDPRVGLEQLAAKLVSYLS-EGAPLVGFNVQFDVTLLENELRRYGLPTVAERLGGRF 127

Query: 121 SRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           + I+D L + R   +    +  L  L + YGI +     H + +D  +   +   M+   
Sbjct: 128 APIVDPLVLDRELDRWRKGKRKLVDLLEVYGIAVDPDELHQSDVDVSMTLSLLQAMVRKY 187

Query: 179 SQIN 182
            Q++
Sbjct: 188 PQLD 191


>gi|163800687|ref|ZP_02194587.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
 gi|159175036|gb|EDP59833.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
          Length = 239

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 78/205 (38%), Gaps = 31/205 (15%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
              +++  +  D ETTGL+ + + II IG V   L+     +     + P   K   E++
Sbjct: 42  TPLSQVEFVALDFETTGLNPQKNGIITIGLVPFSLNRIFLRQARHWKVRPQ-EKLDEESV 100

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLD 119
            +HGIT   L D P    I     +         + H  + +  F+  A L R+ +    
Sbjct: 101 IIHGITHNELVDAPDLDEILGPLLESLA--GKVVVVHYRRIEREFLDQALLTRLGEGIEF 158

Query: 120 PSRIIDTLS------------IARRKHPSSRNDLNSLC---KRYGITISHRSKHGALLDS 164
           P  ++DTL             I  +   +    L  L    +RYG+     + H AL D+
Sbjct: 159 P--VLDTLKIEEDIQQKTSGGIWNKLKGNKPQSLR-LAQSRRRYGLP--DYTPHHALTDA 213

Query: 165 HLLSDVYIKMMVGGSQINFGFKTNE 189
              +++        +QI   +   +
Sbjct: 214 IATAELL------QAQIAHHYNAEQ 232


>gi|46371957|gb|AAS90610.1| conserved hypothetical protein [uncultured soil bacterium]
          Length = 195

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 18/174 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGL    D +++IG ++    +  N      + P  R       ++HG+T+E
Sbjct: 26  FVVLDTETTGLGP-TDEVVQIGIIDSKGRTVLN----TMVRPT-RPVPSVVTRIHGLTNE 79

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +   FS ++              IA+N  FD   +                    + 
Sbjct: 80  KLAEASPFSDLYVSLSSILA--GVTVIAYNMDFDWRMLVQSAGLYGLPAFRTGDRQCAMK 137

Query: 129 IARR---KHPSSR-----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +        R     + L   C+   I +     H AL D+ +   +  KM
Sbjct: 138 AYAQGHGMFDLKRRTYAYHKLGEACRHQKIPVV--QAHDALSDARMTLALVRKM 189


>gi|145296078|ref|YP_001138899.1| hypothetical protein cgR_2000 [Corynebacterium glutamicum R]
 gi|140845998|dbj|BAF54997.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 467

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEA-LKLH 63
           +  + FD+ET   +     I +IG V+ +D      + + +LC  P       E  + +H
Sbjct: 113 LNFVGFDVETA--NDDWGSICQIGLVKYVDG--VEESSESWLCTPPESLNFFNEINIGIH 168

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E + D+P F+ +  +  +F    +   +AHNA+FD   ++        D +     
Sbjct: 169 GITPEMVADQPRFADLVPKMVEFVG--DLPLVAHNAQFDFTALSRACAASGID-VPEMIY 225

Query: 124 IDTLSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHG 159
             +L++AR  K     + L ++    G+ +  ++ H 
Sbjct: 226 GCSLTLARNEKLQVENHKLPTVASHLGVEL--KNHHD 260


>gi|262405023|ref|ZP_06081575.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
 gi|262348862|gb|EEY98003.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
          Length = 209

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 78/180 (43%), Gaps = 11/180 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
            +    +  D ETT LD K   ++ I A +++D    T++ F+V LC   +     ++++
Sbjct: 25  AHHQEYVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLC-APQSLDSGSVRI 83

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H I  + L+D  S         DF   +    + ++ ++D   ++   ++    PL    
Sbjct: 84  HKIRHQDLQDGLSEKEALILLIDFIGNR--PLVGYHIRYDKTILDIACRKHLGFPLPNRL 141

Query: 123 IIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           I  +     +      N      L+++C+   + + ++  H AL D+   + V++++  G
Sbjct: 142 IEVSQIYHDKLEKHLPNAYFDLSLDAICRHLDLPLQNK--HDALQDAIAAALVFVRLTKG 199


>gi|51597447|ref|YP_071638.1| bacteriophage protein [Yersinia pseudotuberculosis IP 32953]
 gi|186896564|ref|YP_001873676.1| exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590729|emb|CAH22374.1| putative conserved bacteriophage protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186699590|gb|ACC90219.1| Exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis PB1/+]
          Length = 233

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 72/183 (39%), Gaps = 22/183 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D ETTGLD     I+EI  ++ +     +      + P G     +   +HGIT++
Sbjct: 60  YLILDTETTGLD-NAAEIVEISIIDCMGNVLLD----TLIKPLGF-IPSDVEAIHGITNK 113

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSRII 124
            + + P +  I  +F +    +N  ++A+N++FD   I    +        D +  +   
Sbjct: 114 MVDNAPHWCDIHEKFIEIIKSRN--FVAYNSRFDTRLIYQSAEFSGVTTGADDIASASGN 171

Query: 125 DTLSIARRKH--------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             +    R H              L +   +  + I+  + H AL D      V IK M 
Sbjct: 172 CAMLEYARFHGQWDSRQSDFKWQTLIAAAGQMNV-ITEGASHRALSDCKTTLGV-IKAMA 229

Query: 177 GGS 179
           GG 
Sbjct: 230 GGE 232


>gi|160901390|ref|YP_001566972.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1]
 gi|160366974|gb|ABX38587.1| Exonuclease RNase T and DNA polymerase III [Delftia acidovorans
           SPH-1]
          Length = 212

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 73/177 (41%), Gaps = 16/177 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGLD + D+II IGAV ++      +   ++ + P+ R    +++++H + +
Sbjct: 34  WVALDCETTGLDVRCDQIISIGAVRIVGERILSSERLELLVRPS-RSVPGDSVRIHRLRE 92

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----------QRINKDP 117
             L    +     ++   F   +    + +  +FDV  I   L          +RI    
Sbjct: 93  RDLARGLAIEDALAQLLRFIGSR--PLVGYYLEFDVAMIERVLRPWLGTGLPNERIEVSA 150

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L        L   +++ P       +L    G+    R  H AL D+ + +  +IK+
Sbjct: 151 LYYDHRFRQLLPWQQQAPEIDLRFATLMANLGLP--QREAHDALNDAVMAALAFIKL 205


>gi|295835840|ref|ZP_06822773.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
 gi|197698852|gb|EDY45785.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
          Length = 239

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 88/216 (40%), Gaps = 21/216 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG D ++DR++    + L       +T    L P G +   EA  +HGI     +
Sbjct: 11  FDLETTGTDVEHDRVVTAAVIRLDASGAVAQTRTWLLDP-GIEIPAEATAIHGIPTARAR 69

Query: 72  --DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPL------DP 120
               P+  ++  E  +            +  NA++D+  ++ E +R     L      +P
Sbjct: 70  AEGAPARGAVA-EITEALAAGLRAGTPLVVMNARYDLSLLDRECRRHGVPALAELLGGEP 128

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           + ++D L + +   ++      L +LC+ YG+ +   S H A  D+   + +  + +   
Sbjct: 129 APVVDPLVLDKHADRYRRGSRVLAALCEHYGVRLD--SAHDARSDALA-ATLLARSLGAR 185

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISL---LKRDKP 211
                     E    + +     + SL   L+R +P
Sbjct: 186 HPRLGALPPTELHRLQVDAAARQSASLQEYLRRTRP 221


>gi|126663019|ref|ZP_01734017.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38]
 gi|126624677|gb|EAZ95367.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38]
          Length = 1512

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 84/243 (34%), Gaps = 25/243 (10%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL         D     R I+I      +           + P G     +
Sbjct: 2   YLIFDTETTGLPRSWSAPITDTDNWPRCIQIAWQLHDEMGNLIEHQDYLVKPEGFNIPYD 61

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
           A ++HGI+ E  L+     S +  +F +    +    +  N  FDV  +  E  R+N   
Sbjct: 62  AERIHGISTELALEQGILLSEVLEKF-NIALSKTKFIVGQNVGFDVNIMGCEFHRLNFGS 120

Query: 117 PLDPSRIIDTLSI---ARRKHP---SSRNDLNSLCKRYGITISHR--SKHGALLDSHLLS 168
            L    ++DT +       K P     R  L +L + +    +      H A  D    +
Sbjct: 121 DLSKMPVLDTCTEVTANLLKLPGGRGGRFKLPTLTELHQYLFNQPFAEAHNATADVEATT 180

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
             +++++              + F    +K +  I L+        + ++E        +
Sbjct: 181 RCFLELIKREIFTKEELDVTPEYFRSFREKNLGEIQLIGLKHINLKKASEEIRA----RL 236

Query: 229 QTL 231
           + +
Sbjct: 237 KKI 239


>gi|117920025|ref|YP_869217.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. ANA-3]
 gi|117612357|gb|ABK47811.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. ANA-3]
          Length = 228

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 79/194 (40%), Gaps = 18/194 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEAL 60
           +  ++   I  D+E TGL+   D+I+ IG V + + +       Q  +   G  +  ++ 
Sbjct: 35  LPISRAPLIAMDLEMTGLNPLQDQILSIGLVPIENGAIPLMGAQQKLVQIQG--SVGQSA 92

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI D  L +  +     + F      +    +AH++  D  F+  ++  I    +  
Sbjct: 93  TIHGILDNHLTEAVTIEEAMAWFVA--QTRGHVLVAHHSPLDCRFLQQDILSIYHQAI-V 149

Query: 121 SRIIDTLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              IDTL + + +     +        L +  +RYG+ I     H AL D+    ++ + 
Sbjct: 150 LPAIDTLLLEKHRLLREHSVLKEGSLRLGACRERYGLPIYG--AHSALTDALACGELLLA 207

Query: 174 M---MVGGSQINFG 184
               M G  ++  G
Sbjct: 208 QVASMGGADELKVG 221


>gi|328906095|gb|EGG25870.1| exonuclease [Propionibacterium sp. P08]
          Length = 207

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 23/175 (13%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  D ET     G+ +      ++  V++ D    +R     + P    +S E   LHG
Sbjct: 37  FVAVDFETANRMGGVSA-----CQLAMVKVHDGHIVDR-LNTLIRPPEGWDSFEFTYLHG 90

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+   + D P +++I      F +   A   AHNA FD        +      L PS   
Sbjct: 91  ISAADVVDAPLWANIADGVSQFVD--GATVYAHNAAFDSRVWRQLDEYFGTTTL-PSPFF 147

Query: 125 DTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +   A+R  P   N      LN+    Y +     + H A  D+   + +  ++
Sbjct: 148 CSYRTAQRLIPGLPNYKLPTVLNACAPTYRL-----NHHRADSDAEACALIVCQL 197


>gi|322419698|ref|YP_004198921.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M18]
 gi|320126085|gb|ADW13645.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M18]
          Length = 314

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 20/180 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           I  D ETTGL+ K D++IE+G V         +  + +  +  F  P G    PE  ++ 
Sbjct: 57  ICLDTETTGLNHKEDKVIELGIVAFEFDPLSGEIYRISDRYSGFEDP-GFPIPPEVREIT 115

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+DE ++ + +F      F D    +    IAHNA FD  F+        K P      
Sbjct: 116 GISDEMVRGQ-AFDDA---FVDLLAGKADLVIAHNAAFDRKFVETRFPAFKKLPW----A 167

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYG-ITISHRSKHGALLDSH-LLSDVYIKMMVGGSQI 181
                I       S   L+ L  + G +TI   + H AL D+  +L  +  ++ V G+ I
Sbjct: 168 CTVCQIDWSAERLSSRTLDFLLFKTGSLTI---NAHRALDDAEGVLGLLLERLPVSGTPI 224


>gi|27365569|ref|NP_761097.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
 gi|37680285|ref|NP_934894.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016]
 gi|320155964|ref|YP_004188343.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
 gi|27361717|gb|AAO10624.1| DNA polymerase III epsilon subunit [Vibrio vulnificus CMCP6]
 gi|37199032|dbj|BAC94865.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
 gi|319931276|gb|ADV86140.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
          Length = 238

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 78/194 (40%), Gaps = 27/194 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+     I+ IG V    +    +  + + + P  +    E++ +HGIT  
Sbjct: 49  VALDFETTGLNPNQHDILSIGLVPFDLHRIRLQQARYWTVKPEDQ-LHEESVVIHGITHS 107

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P    +  E  D         + H    +  F ++ L++   + ++   +IDT+ 
Sbjct: 108 KVQRAPDLIDVLDEVLDCLA--GKVVVVHYQHIERPFFDSALRKRINEGIE-FPLIDTME 164

Query: 129 ----IARRKHPSSRNDLN-------SLC---KRYGITISHRSKHGALLDSHLLSDVYIKM 174
                A+++     N L         L    +RYG+     S H AL D+   ++++   
Sbjct: 165 IESQWAKQQFGGWLNRLKGKSLPSVRLAQSRRRYGLP--DYSAHHALTDAIATAELF--- 219

Query: 175 MVGGSQINFGFKTN 188
               +QI   F + 
Sbjct: 220 ---QAQIAHHFSSQ 230


>gi|51596199|ref|YP_070390.1| Orf81 bacteriophage 186 [Yersinia pseudotuberculosis IP 32953]
 gi|51589481|emb|CAH21103.1| similar to Orf81 bacteriophage 186 [Yersinia pseudotuberculosis IP
           32953]
          Length = 217

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 22/184 (11%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R  K   ++ D ETTGL   +  IIEI  ++       +      + P  +    E   +
Sbjct: 39  RWLKRNYLILDTETTGL-GNDAEIIEISIIDCTGKILLD----TLVKP-LKAIPAEVTAI 92

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGIT+E + D P++  I  +F    N++    + +NA FD   I       N  P+   +
Sbjct: 93  HGITNEMVADAPTWRDIHYQFMTLTNDR--TLLIYNALFDSRLIFQTAA-ANNCPVPEKK 149

Query: 123 II----DTLSIARRKH---PSSRND-----LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            I      +    + +      RN      L++  ++ G+ I     H AL D      +
Sbjct: 150 YIFDAECVMESYAKYYGQWDQKRNKFKWQRLSNAAEQQGVVIDG-VAHRALADCKTTLGI 208

Query: 171 YIKM 174
              M
Sbjct: 209 IRAM 212


>gi|198274893|ref|ZP_03207425.1| hypothetical protein BACPLE_01052 [Bacteroides plebeius DSM 17135]
 gi|198272340|gb|EDY96609.1| hypothetical protein BACPLE_01052 [Bacteroides plebeius DSM 17135]
          Length = 163

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 10/171 (5%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR     D ET   +++   +  +G V + +  +   TF   + P     +    ++HG+
Sbjct: 1   MRDFAAIDFETA--NNQRSSVCSVGVVVVRNG-EIADTFYSLINPEPNYYTYWCSQVHGL 57

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E  +D P F +++++       +    +AHN  FD   + A   R+ +         D
Sbjct: 58  TREDTEDAPVFPAVWAQIEPLI--EGLPLVAHNRPFDESCLKAVF-RVYQMDYPDYEFYD 114

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           TL +ARR  P   N  L+++    G  + +   H AL D+   + +  +++
Sbjct: 115 TLCVARRVFPELPNHQLHTVAAACGYRLENH--HHALADAEACAWIAREIL 163


>gi|71414478|ref|XP_809340.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL
            Brener]
 gi|70873706|gb|EAN87489.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1473

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 76/225 (33%), Gaps = 31/225 (13%)

Query: 8    RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            R +VFDIE+TGL++  D IIEI A + ++ +    +F   + P  R    E + +H ITD
Sbjct: 830  RLVVFDIESTGLNTATDAIIEIAAWDPVEAT----SFSSLVDPE-RAIPQETMAIHHITD 884

Query: 68   EFLKDKPSFSSIFSEFWDFFNEQNA--------EWIAHN-AKFDVGFINAELQRIN--KD 116
              ++  P    +      +     A          I HN    D   +    +R     D
Sbjct: 885  GMVRGAPRLPEVTRALARYLRLDEAQIDPNEVVVLIGHNVFALDEPLLRRAFEREGVCMD 944

Query: 117  PLDPSRIIDTLSIARRKHPSS-------RNDLNSLCKRY-------GITIS-HRSKHGAL 161
             +     +  L   +R+   S       R  L +L           G+ +      H A 
Sbjct: 945  NILFCDSLVLLKALKRELQGSTENPRVDRGVLETLTTSLRLSSLVEGLHVEADGLLHRAD 1004

Query: 162  LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
             D+  L  V +  +    + +   +              P +   
Sbjct: 1005 TDAKTLWFVLVNALGLAGRDSVKQRDAVFSHAARTLVVYPGVGCF 1049


>gi|83814553|ref|YP_445082.1| exonuclease, putative [Salinibacter ruber DSM 13855]
 gi|83755947|gb|ABC44060.1| exonuclease, putative [Salinibacter ruber DSM 13855]
          Length = 249

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 12/181 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSP 57
           M+   +   + FD+E TG D +  RII+IG    +   D +  + T  V + P   +   
Sbjct: 1   MLHLER-PLVFFDLEATGTDPQAARIIQIGMQRFVPSGDGAALDETIDVLVDPQ-EEIPA 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
               L G++ + ++  P   +            +A+   +NA  +D+  + AE +R  + 
Sbjct: 59  AVTDLTGLSPDAVRQAPPLGAHLDRIAPLLA--DADLAGYNALAYDIPLLQAEFERHGRT 116

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMM 175
              P   +  L   R +       L++L +RY G  +     H AL D      V  + +
Sbjct: 117 LPGPDDRV-VLDPYRLEQVLRPRTLSALYERYTGDALDD--AHDALSDVEAAGRVLQRQL 173

Query: 176 V 176
            
Sbjct: 174 A 174


>gi|226355452|ref|YP_002785192.1| DNA polymerase III subunit [Deinococcus deserti VCD115]
 gi|226317442|gb|ACO45438.1| putative DNA-directed DNA polymerase (DNA polymerase III, subunit)
           [Deinococcus deserti VCD115]
          Length = 204

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 80/173 (46%), Gaps = 20/173 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D E+TG++  +D +I++G   L   +      +  ++ P  R    + + +HG++ E
Sbjct: 14  VALDFESTGMNPAHDEVIQVGLAPLDAGAVDLGGAWAQWVRPT-RPFRADTVAIHGLSYE 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P+ S++  E       Q    +AH A  ++GF+     R       P+  +DTL 
Sbjct: 73  LLQEAPAISTVRLELGARL--QGRVLVAHYAALELGFLKRWGLR-------PAATLDTLM 123

Query: 129 IARRKHPSS-------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +A      S          L++L +R+G+ +     H AL D+ + + V++ +
Sbjct: 124 LALALDRQSTATARRDAYTLSALARRFGVEVYGE--HDALADALITAQVFLVL 174


>gi|116051228|ref|YP_789941.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296388274|ref|ZP_06877749.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAb1]
 gi|115586449|gb|ABJ12464.1| putative nuclease [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 208

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 80/174 (45%), Gaps = 11/174 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I  D+ETT LD +   ++ IGAV +           ++++ P       E++++H +   
Sbjct: 33  ISLDLETTSLDPRRADVLSIGAVLVRRGKLVMGERLELYVEPPP-SLDAESIRIHKLRRA 91

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127
            L+ +        +   F  ++    + +   FDV  +N  L+++    L  PS  I +L
Sbjct: 92  DLEGQLQLEQALRQLLAFIGDR--PLLGYYLSFDVAVLNRHLRQLFDRQLHNPSIEISSL 149

Query: 128 SIAR--RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              +  R  P +  DL  ++L +   + +S R  H AL D+  ++ ++++++ G
Sbjct: 150 YHRKVSRHFPDAHIDLRFDTLARALDVPVSGR--HTALGDAQAVALMFMRLLKG 201


>gi|270295360|ref|ZP_06201561.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274607|gb|EFA20468.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 163

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 9/161 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   +  +G V + D    +  +   + P     +    ++HG+T  
Sbjct: 4   FAAIDFETA--NEQRTSVCSVGVVIVRDGEIVDHYYN-LIRPEPEYYTYWNTRVHGLTLA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +D P F  ++ E       +    +AHN  FD   + A  +    D  D      TL 
Sbjct: 61  DTRDAPIFPVVWQEIAPRI--EGLPLVAHNKAFDESCLKAVFRTYCMDYPD-YEFHCTLQ 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            +RR         L+++    G  +     H AL D+   +
Sbjct: 118 TSRRVLKGLPNYQLHTVAACCGYQLEQH--HHALADAEACA 156


>gi|71657888|ref|XP_817452.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain
           CL Brener]
 gi|70882645|gb|EAN95601.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
           cruzi]
          Length = 1417

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 76/225 (33%), Gaps = 31/225 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFDIE+TGL++  D IIEI A + ++ +    +F   + P  R    E + +H ITD
Sbjct: 774 RLVVFDIESTGLNTATDAIIEIAAWDPVEAT----SFSSLVDPE-RSIPQETMAIHHITD 828

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNA--------EWIAHN-AKFDVGFINAELQRIN--KD 116
             ++  P    +      +     A          I HN    D   +    +R     D
Sbjct: 829 GMVRGAPRLPEVTRALARYLRLDEAQIDPNEVVVLIGHNVFALDEPLLRRAFEREGVCMD 888

Query: 117 PLDPSRIIDTLSIARRKHPSS-------RNDLNSLCKRY-------GITIS-HRSKHGAL 161
            +     +  L   +R+   S       R  L +L           G+ +      H A 
Sbjct: 889 NILFCDSLVLLKALKRELQGSTENPRVDRGVLETLTTSLRLSSLVEGLHVEADGLLHRAD 948

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
            D+  L  V +  +    + +   +              P +   
Sbjct: 949 TDAKTLWFVLVNALGLAGRDSVKQRDAVFSHAARTLVVYPGVGCF 993


>gi|325963798|ref|YP_004241704.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469885|gb|ADX73570.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 334

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 10/170 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLHG 64
           M     D ET   +        +G  ++    +        + P    +  +   +++HG
Sbjct: 1   MDFTAIDFETA--NGFRGSPCAVGLTKVR-GGRIAEEASWLMQPPLNHDHFDYHNVRIHG 57

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I  E +  KP F  +F E   F  +      AHNA FD+G I + L+     P      +
Sbjct: 58  IRPEHVAGKPRFGELFPEIGAFIGDD--ILAAHNAAFDLGVIRSGLEVSGL-PGPAYDYV 114

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            T+ ++RR +    N L    +  G+ + +   H A  D+   + + I +
Sbjct: 115 CTVMLSRRCYSLVSNSLPFAAEEAGVPLVNH--HDAAEDARACAGILIDI 162


>gi|94501813|ref|ZP_01308325.1| DNA polymerase III subunit epsilon [Oceanobacter sp. RED65]
 gi|94426034|gb|EAT11030.1| DNA polymerase III subunit epsilon [Oceanobacter sp. RED65]
          Length = 238

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 18/181 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL+  +D II IG V              ++       S E++ +H I   
Sbjct: 46  FMALDFETTGLNPNDDSIISIGMVPFSLQRIYCNNAVYWVVRPNTPLSEESILIHHIKHS 105

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P    +     +  +E     + H  + +  F+N  L+    + L    +IDT+ 
Sbjct: 106 EIQSAPRIERLLEPLLEKLSEH--ILVVHFQRIERLFLNNTLKEHLGETL-QFPLIDTME 162

Query: 129 IARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           I ++               P     LN+  +RY  ++     H AL+D+   ++++I  +
Sbjct: 163 IEKKALKARQGLTGRILNKPVGGIRLNNCRERY--SLPQYQSHNALIDAQATAELFIAQV 220

Query: 176 V 176
            
Sbjct: 221 A 221


>gi|149197350|ref|ZP_01874401.1| DNA polymerase III [Lentisphaera araneosa HTCC2155]
 gi|149139368|gb|EDM27770.1| DNA polymerase III [Lentisphaera araneosa HTCC2155]
          Length = 210

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 11/174 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKL 62
            +K+  +V D E TGL  K D+++ I AV++      +  +F   +    +K   E + +
Sbjct: 25  ASKLDYVVIDCEMTGLKPKQDKLLSIAAVKISQGRIQSQESFYRVIFQEKQKLRDETILI 84

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H +  E +       ++  EF DF   QN   + H    D+ F+N  +            
Sbjct: 85  HRLNHEQISTGSDQIAVLKEFSDFC--QNCIPVGHFFDIDLSFLNPVM-----PLPFLYP 137

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +DT  + +   P   +  LN LC  Y +       H AL D+   + +++K++
Sbjct: 138 HLDTRLLVKTLQPCPSSIQLNELCDFYNLP--SFEAHNALGDATSTACLFLKIL 189


>gi|261210416|ref|ZP_05924710.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
 gi|260840474|gb|EEX67040.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
          Length = 209

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 76/175 (43%), Gaps = 11/175 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD K   ++ I A +++D    T++ F+V LC   +     ++++H I  
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIIDNRILTSQPFEVRLC-APQSLDSGSVRIHKIRH 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L+D  S      +  DF   +    + ++ ++D   ++   ++    PL    I  + 
Sbjct: 89  QDLQDGLSEKEALIQLIDFIGNR--PLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQ 146

Query: 128 SIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
               +      N      L ++C+   + +  +  H AL D+   + V++++  G
Sbjct: 147 IYHDKLEKHLPNAYFDLSLEAICRHLDLPLQDK--HDALQDAIAAALVFVRLTKG 199


>gi|146279555|ref|YP_001169713.1| transposase [Rhodobacter sphaeroides ATCC 17025]
 gi|145557796|gb|ABP72408.1| Transposase and inactivated derivatives-like protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 282

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 14/173 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +V D+ET   + +   I +IG V      +        + P      P  + +HGIT
Sbjct: 1   MKFVVLDVETA--NPRMSSICQIGLVTFEGGVEVAAESH-LIDPEDH-FDPVNVAIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +  +P+F  ++    D         +A +  FD   ++   +      L     +DT
Sbjct: 57  AAAVVGEPTFREVYGRVCDLTAGT---VVACHTHFDRVALSRVCELHALPTLS-CSWLDT 112

Query: 127 LSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             +ARR   +   S   L++L + +GIT  H   H AL D+     +  + + 
Sbjct: 113 ARVARRAWVEFSKSGYGLSNLARHFGITFQH---HDALHDARAAGLILARAIE 162


>gi|322829565|gb|EFZ32905.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
           cruzi]
          Length = 1404

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 76/225 (33%), Gaps = 31/225 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +VFDIE+TGL++  D IIEI A + ++ +    +F   + P  R    E + +H ITD
Sbjct: 761 RLVVFDIESTGLNTATDAIIEIAAWDPVEAT----SFSSLVDPE-RAIPQETMAIHHITD 815

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNA--------EWIAHN-AKFDVGFINAELQRIN--KD 116
             ++  P    +      +     A          I HN    D   +    +R     D
Sbjct: 816 GMVRGAPRLPEVTRALARYLRLDEAQIDPNEVVVLIGHNVFALDEPLLRRAFEREGVCMD 875

Query: 117 PLDPSRIIDTLSIARRKHPSS-------RNDLNSLCKRY-------GITIS-HRSKHGAL 161
            +     +  L   +R+   S       R  L +L           G+ +      H A 
Sbjct: 876 NILFCDSLVLLKALKRELQGSTENPRVDRGVLETLTTSLRLSSLVEGLHVEADGLLHRAD 935

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
            D+  L  V +  +    + +   +              P +   
Sbjct: 936 TDAKTLWFVLVNALGLAGRDSVKQRDAVFSHAARTLVVYPGVGCF 980


>gi|281355577|ref|ZP_06242071.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
           BAA-548]
 gi|281318457|gb|EFB02477.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
           BAA-548]
          Length = 268

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 9/145 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +VFDIE+TG+  + DRI+EI  +++     T  T +    P      P A  +HGI
Sbjct: 8   ERPLVVFDIESTGVMPQRDRIVEIAVLKIFPDGHTQNTVRRL-NPE-MPIPPGATAIHGI 65

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDP-LDPSRI 123
           +D  + D P+F  I  + + +   ++ +   +N   FD+  + AE +R      +D  ++
Sbjct: 66  SDADVADCPTFLLIAEKLFRYI--EDCDLAGYNITGFDIPMLEAEFKRAGFTFKVDDRKV 123

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
           ID  +I  + +P     L +  + +
Sbjct: 124 IDAYNIFCKLYP---RTLTAAYQFF 145


>gi|260753544|ref|YP_003226437.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552907|gb|ACV75853.1| Exonuclease RNase T and DNA polymerase III [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 297

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 88/243 (36%), Gaps = 35/243 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK------TNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ETTGLD + D IIE+ A+   +Y           +FQ    P+ +  +PE   + 
Sbjct: 44  LVVDVETTGLDPQRDEIIEL-AMTPFNYGLDGTIFSVGDSFQGLRQPS-KPIAPEITAIT 101

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSR 122
           GIT+E +        I            A  + AHNA FD  F+         D      
Sbjct: 102 GITNEMVAG-----QIVDPAAVASFAAPASLVIAHNAAFDRRFLERF-----NDVFSTKP 151

Query: 123 IIDTLSI-ARRKHPSSRNDLNSLCKRYGITIS-HRSKHGALLDSHLLSDVYI-------- 172
              +LS             L  L +  G     HR+ H  L    LL+ +++        
Sbjct: 152 WACSLSQIDWAAEGFEGTKLAYLAQAAGFFYDRHRAMHDCLATVELLA-MWLPRSGATGL 210

Query: 173 -KMMVGGSQINFGFKTNEDRF----FKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
            +++ G   +++        F      + +    N     + +  +  + + + +   + 
Sbjct: 211 SRLLDGARTVSWRIWAENAPFDLKDVLKARGYRWNGDPGPQPRAWYIDVPEAQCEAELRF 270

Query: 228 IQT 230
           ++T
Sbjct: 271 LRT 273


>gi|288939927|ref|YP_003442167.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum
           DSM 180]
 gi|288895299|gb|ADC61135.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum
           DSM 180]
          Length = 225

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 12/176 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            ++  +  D+ETTGLD + D I+ +G V L        T +  L    R     +  +H 
Sbjct: 37  REVEYLAIDLETTGLDQRQDLILSVGYVVLHGPEIDLSTARHHLVRIDRSIPEASAVIHQ 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD+          +  E       +    IAH+A  + GF++   QR     L P R++
Sbjct: 97  ITDDQAATGRELEDVLGEVLAALTGR--VMIAHHAGIEQGFLSQACQRCWGRGL-PLRLV 153

Query: 125 DTLSIA-----RRKHPSSRNDLN--SLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           DT ++A     RR+ P   +DL   +L  RY +       H AL D+   +++++ 
Sbjct: 154 DTQTLAHRTLERRQIPFKASDLRLHALTSRYNLP--RHGAHNALSDALSAAELFLA 207


>gi|323498776|ref|ZP_08103762.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
 gi|323316138|gb|EGA69163.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
          Length = 210

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 72/180 (40%), Gaps = 11/180 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKL 62
             K   +  D ETT LD     ++ I A +++D      R F+V L    +     ++K+
Sbjct: 25  LQKGEYVSLDCETTSLDPNRAELVTIAAAKIIDNRIITSRPFEVRLR-APQSLDSNSVKI 83

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H I  + L D         +  +F   +    + ++ ++D   ++   +R    PL    
Sbjct: 84  HQIRHKDLVDGIDEKQALIQLLEFIGNR--PLVGYHIRYDKKILDLACRRHLGFPLPNPL 141

Query: 123 IIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           I  +     +      N      L ++CK   + + ++  H AL D+   + V++++  G
Sbjct: 142 IEVSQIYHDKLERHLPNAYFDLSLEAICKHLDLPMQNK--HDALQDAISAALVFVRLTKG 199


>gi|227541256|ref|ZP_03971305.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC
            51866]
 gi|227182972|gb|EEI63944.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC
            51866]
          Length = 1246

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 8/171 (4%)

Query: 9    KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
              V +++T+G+  + DRIIEIG V      K   T+   + P    +      +HGI++ 
Sbjct: 849  FAVLNVKTSGIS-ERDRIIEIGIVLATLNGKVEGTYTTLINPRRSFSD---SAIHGISER 904

Query: 69   FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 P F  +  +  +  + +    IAH+A F    +  E  R N   +  +    T+S
Sbjct: 905  MTVATPVFEEVADDIAELLDRR--ILIAHDAPFVSKQLGREFSRSNVKAIHLNDGYCTMS 962

Query: 129  IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             + +   SS   L+S     G+   H   H AL D+   +++   ++  G+
Sbjct: 963  HSPKLLGSSGRSLSSALDAAGLKNEH--SHCALDDAMATANLLNVLLHKGA 1011


>gi|91216678|ref|ZP_01253643.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC
           700755]
 gi|91185147|gb|EAS71525.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC
           700755]
          Length = 1452

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 87/233 (37%), Gaps = 25/233 (10%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            I+FD ETTGL  + +          R I+I      ++    +     + P G     +
Sbjct: 2   YIIFDTETTGLPKRWNAPITDTDNWPRAIQIAWQVHDEWGNLVKAKDYLIRPEGFDIPYD 61

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           A ++HGI+    L+   S   + +EF +  + ++   +  N  FDV  + AE  R   + 
Sbjct: 62  AERIHGISTALALQKGESLDMVLAEFNEALS-ESKFVVGQNVGFDVNVMGAEFHRAQLES 120

Query: 118 LD-PSRIIDTLSIARRKH------PSSRNDLNSLCK----RYGITISHRSKHGALLDSHL 166
           L     ++DT +    K          +  L +L +     +G   +    H A  D   
Sbjct: 121 LMASMPVLDTCTEKTAKLCQIPGGRGGKFKLPTLTELHQYLFGQPFN--EAHNATADVEA 178

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +  +++++  G+      +       + + +    +S +  +     + + +
Sbjct: 179 TTRCFLELIRTGNYTENELQAERSYLQEFKSRHTGPLSKVGLNHINLKKASAQ 231


>gi|197261475|ref|YP_002154290.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage
           LMA2]
 gi|197244565|emb|CAR31299.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage
           LMA2]
          Length = 184

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 74/178 (41%), Gaps = 16/178 (8%)

Query: 7   MRKIVFDIETTGLD-------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   V+D ETTGL         K  RIIE   V   D  K     + F+C  G       
Sbjct: 1   MIFAVWDTETTGLPFHQRVSLRKQPRIIEFAGVIT-DGEKILDEVE-FICNPGIVIEEII 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDP 117
            K+ G+ +E L   PSF     +  DFF+  +A  IAHN  FD   +  +L R     D 
Sbjct: 59  TKITGLKNEDLIKHPSFLDQRQKVRDFFSRADAN-IAHNLPFDKFMLTCDLARGKFGLDE 117

Query: 118 LD-PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++ PS  I T+  +       R  L  L + Y      +  H AL D  LL +V  +M
Sbjct: 118 VNFPSLDICTVEESAPLF-GHRMRLQHLYEHYCGPYVQK--HRALDDVRLLHEVCKRM 172


>gi|325125846|gb|ADY85176.1| DNA polymerase III, epsilon subunit [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 286

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 26/174 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTG      +II+IGA+++ D  +T   F  ++ P   K +     L GI++ 
Sbjct: 33  YTVFDLETTG-----KKIIQIGALKVRDD-QTVAKFSTYVNP-LEKINDYVSHLTGISNY 85

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
                P    +  +F DF  +     + HN   FD   +       N  P+  +  +DTL
Sbjct: 86  QTDAAPLIDEVMPDFLDFVGDD--TLVGHNILSFDCNVLAD-----NGYPVA-NPKLDTL 137

Query: 128 SIA-----RRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +A     R     P S   L++L + YGI I   + H A+ D    + VY K+
Sbjct: 138 LLANSYKKRGLFADPISNVRLSTLKEYYGINI---NSHIAISDCITNNIVYQKL 188


>gi|319764450|ref|YP_004128387.1| exonuclease rnase t and DNA polymerase iii [Alicycliphilus
           denitrificans BC]
 gi|330826666|ref|YP_004389969.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
           denitrificans K601]
 gi|317119011|gb|ADV01500.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
           denitrificans BC]
 gi|329312038|gb|AEB86453.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
           denitrificans K601]
          Length = 221

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 64/176 (36%), Gaps = 13/176 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+ + D I+ IGAV ++     T+   ++ + P  +  S  ++++H + +
Sbjct: 42  WVALDCETTGLNPRTDEIVSIGAVRIVGERILTSERLELLVRPE-KGVSAGSVRIHRLRE 100

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDT 126
             L               F   +    + +  +FDV  +  A    +          +  
Sbjct: 101 RDLAGGIPRDEAMRRLMHFIGSR--PLVGYYLEFDVAMLGRAIWPLLGMGLPQRKIEVSA 158

Query: 127 LSIARRKHPSSRN--------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L    +               DL        + +  R  H AL D+ + +  +IK+
Sbjct: 159 LYYDYKFRQLPPYQQQANADIDLRFSTLMRDLQLPEREAHDALNDAVMAAMAFIKL 214


>gi|332534821|ref|ZP_08410645.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035733|gb|EGI72220.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 207

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 16/186 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + R +V D+E TGLD+K   I+ +  V + +        Q  +  + +    ++   HGI
Sbjct: 22  QQRYLVIDLELTGLDAKQHEIVSVAWVIIDNQCIKMSKSQHLINKDVKSL-AQSPVFHGI 80

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +D+ +    S +SI  +  + F+  +   + HNA  D  F+   L+  N   + P  I+D
Sbjct: 81  SDDAIAKGLSLNSILMQLSNHFS--DCILVFHNAMLDWVFLKIALKNANI-TIRPKLILD 137

Query: 126 TLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           TL I +++              LN+   RY +   H   H AL D+   +++   ++   
Sbjct: 138 TLHIEQKRLLHHSTEIKQDDLTLNACRTRYELPSYH--CHHALTDAQATAEL---LLAQC 192

Query: 179 SQINFG 184
            QI+ G
Sbjct: 193 HQISRG 198


>gi|311694884|gb|ADP97757.1| exonuclease RNase T and DNA polymerase III [marine bacterium HP15]
          Length = 190

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 16/172 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGL    D I+EI  +     +  +      + P+  + +P A  +HGIT   
Sbjct: 20  VIIDTETTGLT-DTDEIVEISVINCHGTTLLD----TLIRPSS-EINPAAQAVHGITLAE 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--DPLDPSRIIDTL 127
             D P+F  +  +       Q    + +N+ +D   I     +       L P   + T 
Sbjct: 74  TADAPTFDQVLPDLLRVI--QGKTVVMYNSSYDARLIQQSAMKRGCRAPTLYPHCAMKTY 131

Query: 128 SIARRKHPSSR-----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +    +    R       L+   ++ G+T+   + H AL D      V   M
Sbjct: 132 AKFYGQWDDYRESWKWQSLDKAARQCGVTVDG-NAHRALTDCFTTLGVIKAM 182


>gi|197261383|ref|YP_002154199.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage
           LBL3]
 gi|197244473|emb|CAR31208.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage
           LBL3]
          Length = 184

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 75/178 (42%), Gaps = 16/178 (8%)

Query: 7   MRKIVFDIETTGLD-------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   V+D ETTGL         K  RIIE   V   D  K     + F+C  G       
Sbjct: 1   MIFAVWDTETTGLPFHQRVSLRKQPRIIEFAGVIT-DGEKILDEVE-FICNPGIVIEEII 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDP 117
            K+ G+ +E L   PSF     +  DFF   +A  IAHN  FD   +  +L R  +  + 
Sbjct: 59  TKITGLKNEDLIKHPSFLDQRQKVRDFFARADAN-IAHNLPFDKFMLTCDLARGKLGLEE 117

Query: 118 LD-PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++ PS  I T+  +       R  L  L + Y      +  H AL D  LL++V  +M
Sbjct: 118 VNFPSLDICTVEESAPLF-GHRMRLQHLYEHYCGPYVQK--HRALDDVRLLNEVCKRM 172


>gi|293411964|ref|ZP_06654689.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469519|gb|EFF12008.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 185

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 75/173 (43%), Gaps = 9/173 (5%)

Query: 7   MRKIV--FDIETTGLDS-KNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62
           M  IV   DIE+TGLD     +IIEI       +  +   + ++   P  R   P+A  +
Sbjct: 1   MTTIVAGIDIESTGLDFLAGHKIIEIAITRYELETQRHIDSLEMRFNP-RRNIDPKAQAV 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
           HGI+ E L  +P  S+  SE   +    +A WIAHN   FD+ FI  E        L   
Sbjct: 60  HGISLEQLAAEPLLSNHASEIGAYMGACSA-WIAHNGEAFDIPFIRHEFSGYGVR-LPEV 117

Query: 122 RIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +IDT LS         R  L  L    G    H   H AL D++L+   + K
Sbjct: 118 PVIDTMLSGLWATEDGKRPRLEELAFSLGFIYDHAKAHSALYDTNLMMQCFFK 170


>gi|172040446|ref|YP_001800160.1| hypothetical protein cur_0766 [Corynebacterium urealyticum DSM
           7109]
 gi|171851750|emb|CAQ04726.1| hypothetical protein cu0766 [Corynebacterium urealyticum DSM 7109]
          Length = 239

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 18/179 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK---TNRTFQVFLCPNGRKNSP---EALKLH 63
           +  D+ETTGLD K D I+ IG V +              +   P   +  P   E+ K+H
Sbjct: 44  LAVDVETTGLDPKKDLILSIGWVPMTGGRIFPAEADYAVIHHEPEVVERVPAGMESAKIH 103

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT   ++       + S        +    + H +  +  F+    ++     L  S +
Sbjct: 104 GITHTDIEAGEPLRDVLSRLL--LALRGRAMVVHFSPIETQFLGQACRQHFGSGLSVS-V 160

Query: 124 IDTLSIARRK------HPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           IDT +I RR       +P   +  L  + +RYG+   H   H AL D+    ++ + M+
Sbjct: 161 IDTFAIERRYFERMATYPRGEDLRLPRVRERYGLP--HYGSHNALSDALACGELLLAML 217


>gi|333023692|ref|ZP_08451756.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
 gi|332743544|gb|EGJ73985.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
          Length = 239

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 23/217 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG D + DRI+    + L        T    L P G +   EA  +HGI     +
Sbjct: 11  FDLETTGTDVEQDRIVTAAVIRLDSSGAVAHTRTWLLDP-GVEIPAEATAIHGIPTARAR 69

Query: 72  --DKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPL------DP 120
               P+  ++  E  +    +       +  NA++D+  ++ E +R     L      +P
Sbjct: 70  ADGAPARGAVA-EITEALAAELRVGTPLVVMNARYDLSLLDRECRRHGVPALAELLGAEP 128

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           + +ID L + +   ++      L +LC  Y + +   + H A  D+  L+   +   +G 
Sbjct: 129 APVIDPLVLDKHADRYRRGSRVLAALCAHYDVRLD--TAHDARSDA--LAATLLARSLGA 184

Query: 179 SQINFGFKTNED----RFFKEEKKTVPNISLLKRDKP 211
              + G     D    +     +++      L+R KP
Sbjct: 185 HHPSLGTLPPTDLHRLQIDAAARQSASLQEYLRRTKP 221


>gi|255534927|ref|YP_003095298.1| DNA polymerase III subunit epsilon [Flavobacteriaceae bacterium
           3519-10]
 gi|255341123|gb|ACU07236.1| DNA polymerase III subunit epsilon [Flavobacteriaceae bacterium
           3519-10]
          Length = 185

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 15/174 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGITD 67
               D ET     + +   E+G + +++  +  +T    + P       P  + +HGIT 
Sbjct: 4   FCAIDFETA--THERNSACEMG-ICVVEDGQIVKTQTWLIKPPNYPYFHPRNIDVHGITP 60

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++D P+F  I+ E  +         +AHNA FD G + + L          +  + ++
Sbjct: 61  RDVQDSPTFDEIWHEAENLM--YGNLMVAHNAGFDAGVLRSCLDYYGFYKPKLN-YLCSI 117

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV----YIKMMV 176
           SIA++   +  +  L SL +++ I+  H   H A  D+ + + +    + K+M+
Sbjct: 118 SIAKKSWKNLPKYGLKSLAEQHQISFKH---HRAGDDAEVCAKISLLAFEKLMI 168


>gi|241662069|ref|YP_002980429.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12D]
 gi|240864096|gb|ACS61757.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
           12D]
          Length = 216

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 71/183 (38%), Gaps = 17/183 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+ + D I+ IGAV ++     T+   ++ + P G +  PE++ +H + +
Sbjct: 38  WVALDCETTGLNVRTDEIVSIGAVRIVGNRILTSERMELLIRPQG-EMRPESICVHRLRN 96

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRIIDT 126
             L    S          F   +    + +  +FDV  +N   +  +      P   +  
Sbjct: 97  RDLDSGVSIEQAIHALLHFIGSR--PLVGYYLEFDVAMLNRVVVSMLGIGLPQPKIEVSA 154

Query: 127 LSIARRKHPSSRND------LN----SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           L    R              L+    ++ K   +       H AL D+ + +  ++K+  
Sbjct: 155 LYYDYRFQQLPPYRQQGDPDLDLRFATVMKELDLPTWD--AHDALNDAVMAALAFVKLRQ 212

Query: 177 GGS 179
            G+
Sbjct: 213 LGA 215


>gi|329956618|ref|ZP_08297191.1| DNA polymerase III, epsilon subunit family protein [Bacteroides
           clarus YIT 12056]
 gi|328523990|gb|EGF51066.1| DNA polymerase III, epsilon subunit family protein [Bacteroides
           clarus YIT 12056]
          Length = 163

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 9/161 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   +  +G V + D    +  +   + P     +    ++HG+T  
Sbjct: 4   FAAIDFETA--NEQRTSVCSVGVVIVRDGEIVDN-YYSLIRPEPEYYTYWNTRVHGLTLA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P F +++ E       +    +AHN  FD   + A  +    D  D      TL 
Sbjct: 61  DTACAPVFPTVWQEIAPRI--EGLTLVAHNKAFDESCLKAVFRTYGMDYPDYD-FRCTLQ 117

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            +RR         L+++    G  +     H AL D+   +
Sbjct: 118 ASRRAIKGLPDYQLHTVAAWCGYRLEQH--HHALADAEACA 156


>gi|328951319|ref|YP_004368654.1| Exonuclease RNase T and DNA polymerase III [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451643|gb|AEB12544.1| Exonuclease RNase T and DNA polymerase III [Marinithermus
           hydrothermalis DSM 14884]
          Length = 185

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 74/181 (40%), Gaps = 16/181 (8%)

Query: 7   MRKIV---FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSP-EALK 61
           MR++V    D+ET+GL+ + D+I+ +G V +     +    F   + P      P   LK
Sbjct: 1   MRRVVYWALDVETSGLNPRRDQILAVGMVPVRGGAVRCREAFYSLVRPPSPAVVPLWGLK 60

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            H I    L+  P  + +  E       +    + H+A  DV F+    + +   P    
Sbjct: 61  AHHIRPVELRGAPPLAEVLREVDRRL--RGGALLVHHAAVDVAFLRRAYRALGW-PWPAP 117

Query: 122 RIIDTLSIARRKHPSSRND--------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           R++DT  +  R                L+    R  + +    +H AL+D+   +++++ 
Sbjct: 118 RVVDTARLLERLARRRALLEPYRAPPPLDLAGARAYLGLPPYPQHHALVDALATAELFLA 177

Query: 174 M 174
           +
Sbjct: 178 L 178


>gi|332534582|ref|ZP_08410417.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036002|gb|EGI72481.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 236

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 77/193 (39%), Gaps = 24/193 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL+S+ND I+ +G V         +  + ++    R    E++ +HGIT  
Sbjct: 47  FVAMDFETTGLNSQNDDIVSVGLVPFNLERIYCKHSRHWVVQPRRNLHEESILIHGITHS 106

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P  + I     +  +      + H A  +  F+N  L  +         ++DT+ 
Sbjct: 107 EVDDAPDLNQIIEPLLEALS--GKVVVVHYAAIERHFLNNALL-LRLKEGIEFALVDTME 163

Query: 129 IARRKHPSSRN-------------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           I +R   + +               L     RY  ++     H AL D+   +++     
Sbjct: 164 IEKRALKARQGLLGRLFNTKLGSLRLTDCRARY--SLPAYQNHNALTDALATAELL---- 217

Query: 176 VGGSQINFGFKTN 188
              +Q+++ ++ +
Sbjct: 218 --QAQLSYHYRVD 228


>gi|153008625|ref|YP_001369840.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC
           49188]
 gi|151560513|gb|ABS14011.1| Exonuclease RNase T and DNA polymerase III [Ochrobactrum anthropi
           ATCC 49188]
          Length = 332

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    +  ++ GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPADITRITGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRII 124
           TD+ +K +    +I  E  D    +    IAHNA FD  F+    +   NK      + I
Sbjct: 134 TDDMVKGQ----TIPREKLDALIAEADIIIAHNAGFDRPFLERFSIAFANKPWACSVKEI 189

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           D      R    ++  L  L    G +    + H A  D   L  V 
Sbjct: 190 D---WTARGFEGTK--LGYLI---GQSGYFHNGHRAEDDCQALLAVL 228


>gi|218148597|ref|YP_002364365.1| hypothetical protein PP141_gp57 [Pseudomonas phage 14-1]
 gi|218059793|emb|CAU13913.1| hypothetical protein [Pseudomonas phage 14-1]
 gi|294663797|gb|ADF29351.1| putative DNA polymerase III epsilon subunit [Pseudomonas phage
           JG024]
          Length = 184

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 74/178 (41%), Gaps = 16/178 (8%)

Query: 7   MRKIVFDIETTGLD-------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   V+D ETTGL         K  RIIE   V   D  K     + F+C  G       
Sbjct: 1   MIFAVWDTETTGLPFHQRVSLRKQPRIIEFAGVIT-DGEKILDEVE-FICNPGIVIEEII 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDP 117
            K+ G+ +E L   PSF     +  DFF   +A  IAHN  FD   +  +L R  +  + 
Sbjct: 59  TKITGLKNEDLIKHPSFLDQRQKVRDFFARADAN-IAHNLPFDKFMLTCDLARGKLGLEE 117

Query: 118 LD-PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++ PS  I T+  +       R  L  L + Y      +  H AL D  LL +V  +M
Sbjct: 118 VNFPSLDICTVEESAPLF-GHRMRLQHLYEHYCGPYVQK--HRALDDVRLLHEVCKRM 172


>gi|209693722|ref|YP_002261650.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238]
 gi|208007673|emb|CAQ77784.1| putative exonuclease [Aliivibrio salmonicida LFI1238]
          Length = 238

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 27/203 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
               ++  +  D ETTGLD+  + II IG V   L+  +   +   F+          ++
Sbjct: 41  TPLKEIEFVALDFETTGLDANQNSIISIGLVPFTLERIRCRESQHWFVKAQD-SLEENSV 99

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGIT   L+  P    I  +  D         + H  K +  F +  L+ +  + +  
Sbjct: 100 VIHGITHSDLQGAPDLRRILEKVLDALA--GKVVVVHYRKIERDFFDINLRNLIGEGI-V 156

Query: 121 SRIIDTLS--------------IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             I+DT+                  +        L +   RYG+     + H AL D+  
Sbjct: 157 FPIVDTMQIEGDFQQEQAKGLINWIKGKRPESIRLANSRSRYGLP--AYAPHHALTDAIA 214

Query: 167 LSDVYIKMMVGGSQINFGFKTNE 189
            ++++       +QI + F  N+
Sbjct: 215 TAELF------QAQIRYHFSEND 231


>gi|56692916|ref|YP_164280.1| exonuclease [Pseudomonas phage F116]
 gi|48527502|gb|AAT45877.1| exonuclease [Pseudomonas phage F116]
          Length = 201

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 69/181 (38%), Gaps = 19/181 (10%)

Query: 11  VFDIETTGL--------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +FD ETTG+        D     I+E+ A+       T   F+  + PNG + +PE   +
Sbjct: 5   IFDFETTGIPEWKLPSEDPCQPHIVEVAALLCDAAGNTIDRFEAIVRPNGWEITPEMTAI 64

Query: 63  HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD----- 116
           HGI+ E   D   S +     F    N + A   AHN  FD       L R   +     
Sbjct: 65  HGISHEQAMDVGISEAEALEGFLA-INGRAARRAAHNISFDDRITRIALMRYQDEDAANA 123

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR---SKHGALLDSHLLSDVYIK 173
             +      T   +R +    RN L +L + Y    +       H A+ D+   + +Y  
Sbjct: 124 FKESGEKFCTCYRSRAQVALPRNKLPTLAEAYK-HFTGEDLVEAHRAMPDAQACARIYFA 182

Query: 174 M 174
           +
Sbjct: 183 L 183


>gi|190895636|ref|YP_001985928.1| DNA polymerase III subunit epsilon [Rhizobium etli CIAT 652]
 gi|190699581|gb|ACE93665.1| probable polymerase protein, epsilon subunit [Rhizobium etli CIAT
           652]
          Length = 326

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 65/169 (38%), Gaps = 21/169 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+ ++D IIEIGAV     D         ++  L    R   PE  +L GI
Sbjct: 75  VVLDTETTGLNHRSDEIIEIGAVAFTFDDDGSIGDIVGIYGGLQQPSRPIPPEVTRLTGI 134

Query: 66  TDEFLKDKPSFSSIFS--EFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR 122
           TD  ++       +       D     +   IAHNA FD  F  A       K       
Sbjct: 135 TDAMVEG-----QVIDIRSLSDLIEPADL-IIAHNAGFDRPFCEAFSPLFTGKAWACSVS 188

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            ID    + R    ++  L  L  + G        H A+ D H L ++ 
Sbjct: 189 EID---WSARGFEGTK--LGYLVGQAG---YFHEGHRAVDDCHALLEIL 229


>gi|295136252|ref|YP_003586928.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87]
 gi|294984267|gb|ADF54732.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87]
          Length = 1462

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 80/243 (32%), Gaps = 25/243 (10%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R I+I      +           + P G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPLTDSDNWPRCIQIAWQLHDEMGNLIEHQDYLVRPEGFDIPYD 61

Query: 59  ALKLHGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
           A ++HGI+ +  + +  S   +  +F +    +    +  N  FDV  + AEL R   D 
Sbjct: 62  AERVHGISTDLAREEGISLEEMLEKFNEALG-KTKFIVGQNLGFDVNIMGAELHRAGMDS 120

Query: 117 PLDPSRIIDTLSIARRKH------PSSRNDLNSLCKRYGITISH--RSKHGALLDSHLLS 168
            L    ++DT +    +          +  L +L + +           H A  D    +
Sbjct: 121 QLLELPVLDTCTETTAEMCRIPGGRGGKFKLPTLTELHEYLFDEPFGEAHNATADVEATT 180

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
             +++++   S            F    +        +        + ++       K +
Sbjct: 181 RCFLELVRKRSYSAEELNAAPGYFEDYIEANPEPFQPIGLKHINLKKASEAIR----KRL 236

Query: 229 QTL 231
           + L
Sbjct: 237 EKL 239


>gi|311741567|ref|ZP_07715391.1| probable DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303737|gb|EFQ79816.1| probable DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 442

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 17/174 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEA-LKLHGI 65
               D+ET   +     I +IGAV   D  +T+     +LC  P G ++  +  + +HGI
Sbjct: 100 FTAVDVETA--NDNWGSICQIGAVRFRDGQETDSR--SWLCTPPPGLEHFADINVSIHGI 155

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + +K  P+F+ +  E +DF        +AHNA+FD   + + L     + +    +  
Sbjct: 156 TADDVKGAPAFADVAKELFDFLG--GDVLVAHNAQFDSTALRSGLLTAGAE-VPTVPLAC 212

Query: 126 TLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +L+++R     +      + L ++     ++    S H A  D+    ++  ++
Sbjct: 213 SLALSRDASKAKVISVRNHKLPTVAAH--LSAPDFSHHDATEDARAAGEIIARL 264


>gi|320533707|ref|ZP_08034325.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134075|gb|EFW26405.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 264

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 86/229 (37%), Gaps = 28/229 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLD---YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           FD ETTG+D   DR++    V   +        ++   +L   G +    A  +HG+T E
Sbjct: 32  FDTETTGVDPSGDRLVTAALVWRAEPQADGVRPQSVTTWLADPGVEIPEAASAVHGVTTE 91

Query: 69  FLK-DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDP------- 117
             + +    + + +E  D            IA NA +D+  + AEL R            
Sbjct: 92  RARAEGRPVTEVLTEVSDHLVAAMTAGTPVIAFNASYDLTLMEAELARHGLPTMRSRLGR 151

Query: 118 -LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            L P      L  A  ++   +  L  LC+ YG+ + + + H A +D     DV   +  
Sbjct: 152 ELGPIADPLVLDRAVDRYRRGKRRLGDLCEVYGVHV-NEALHTAEVDVAATLDVLEALAA 210

Query: 177 GGSQIN-------FGFKTNEDRFFKEE-----KKTVPNISLLKRDKPLF 213
              Q++         F+T   R + E       +  P+ +  +   PL 
Sbjct: 211 AHPQVSKLGPDELVTFQTRAHRTWAESFNEWLARKNPSRARAQTAWPLP 259


>gi|300858320|ref|YP_003783303.1| hypothetical protein cpfrc_00902 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685774|gb|ADK28696.1| hypothetical protein cpfrc_00902 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206036|gb|ADL10378.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis C231]
 gi|302330589|gb|ADL20783.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276273|gb|ADO26172.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis I19]
          Length = 203

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 15/182 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPN--GRKNSPEA 59
           + +K R +  D+ETT L     +I+ IG V + D   +      VF+        +   +
Sbjct: 25  KNDKTRFLAVDMETTALLPTKGKILSIGWVPIEDGRVQLADAGHVFIRSENLEHDSVGNS 84

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             LH ITD  L +  S  S           +    +AH A  ++ F +A  +R    PL 
Sbjct: 85  AALHNITDTMLAEGESEHSAMEMLLSSL--RGRVLLAHFAPIELRFGDAACRRHFGAPL- 141

Query: 120 PSRIIDTLSIARR------KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               +DT+ + RR       +P   +  L  + KRYG+   H   H AL D+   +++Y+
Sbjct: 142 RVPYVDTMELERRHMERMGTYPRGEDLRLARVRKRYGLP--HYRSHNALTDALACAELYL 199

Query: 173 KM 174
            +
Sbjct: 200 AL 201


>gi|315180012|gb|ADT86926.1| DNA polymerase III subunit epsilon [Vibrio furnissii NCTC 11218]
          Length = 238

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
              +++  +  D ETTGL    D II IG V   L+    NR     + P  +K    ++
Sbjct: 41  TPLSEVEFVAMDFETTGLSVDKDEIITIGLVPFTLERIYLNRAKHWTVRP-RQKLDEHSI 99

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGIT   + D P  S IF E  +    +    + H  + +  F++  L+R   + ++ 
Sbjct: 100 VIHGITHNDIMDAPDLSDIFEEVLEHLAGR--VLVVHYHRIEREFLDRALKRRIGEGIE- 156

Query: 121 SRIIDTLS-------------IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHL 166
             +IDT+                R +     +  L     RYG+     + H AL D+  
Sbjct: 157 FPVIDTMEIETLIQKRLTAGLWNRLRGKKPESVRLGQSRMRYGLP--AYTPHHALTDAIA 214

Query: 167 LSDVYIKMMVGGSQINFGFKTNE 189
            +++        +QI   +  ++
Sbjct: 215 TAELL------QAQIAHHYSPDQ 231


>gi|320011855|gb|ADW06705.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           flavogriseus ATCC 33331]
          Length = 241

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 15/165 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    +     FD ETTG+D + DRI+    V         R  +  + P G    P A 
Sbjct: 1   MTHWFEGPLAAFDTETTGVDVEEDRIVSAALVVQDAAGGRLRVTRWLVNP-GIPVPPGAT 59

Query: 61  KLHGITDEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
           ++HG+TD+ L+       P    I     +         +  NA FD+  ++ EL+R   
Sbjct: 60  EIHGLTDDHLQRNGRWPAPVVEEIARSLAEQCAT-GRPLVVMNAPFDLTLLDRELRRHRA 118

Query: 114 ----NKDPLDPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITI 152
                     P  ++D   L     ++   R  L  LC+ YG+T+
Sbjct: 119 SSLAGYLGKKPLCVLDPRVLDKHLDRYRKGRRTLTDLCELYGVTL 163


>gi|254495210|ref|ZP_05108134.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152]
 gi|85819562|gb|EAQ40719.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152]
          Length = 1445

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 89/247 (36%), Gaps = 29/247 (11%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL         D     R I+I      +  +        + P G     +
Sbjct: 2   YLIFDTETTGLPKSWNAPITDTDNWPRCIQIAWQLHDEMGRVIEHNDFLIQPEGFNIPYD 61

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           A ++HGI+ E   ++  +     + F +   ++    +  N +FD+  +  E  R+  + 
Sbjct: 62  AERIHGISTELAQQEGITLEEGLALFNEVL-QKTKFVVGQNVEFDLNIMGCEFHRLATET 120

Query: 118 -LDPSRIIDTLSIARRKH------PSSRNDLNSLCK----RYGITISHRSKHGALLDSHL 166
            L+   ++DT +               +  L +L +     +GI  +    H A  D   
Sbjct: 121 NLNQLPVLDTCTEKTALLCQIPGGRGGKFKLPTLTELHKHLFGIDFA--EAHNATADVEA 178

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK 226
            +  +++++            +++ F    ++    I L+        +    E D+  K
Sbjct: 179 TTRCFLELIRIREFTKEELDVDQEYFKNFSEENPKPIQLIGLKHINLKK----ESDKIRK 234

Query: 227 TIQTLGK 233
            ++ L  
Sbjct: 235 RLEKLKD 241


>gi|313157971|gb|EFR57377.1| exonuclease [Alistipes sp. HGB5]
          Length = 164

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 42  RTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
            +F   + P     S     +HG+T +   + P F +++ +       +    +AHN+ F
Sbjct: 34  DSFYSLIRPRPNFYSRFTTAIHGLTYDDTAEAPDFETVWKQIAPRI--EGLPLVAHNSPF 91

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISHRSKHG 159
           D G + A  +     P    R   T   +RR   +    + L+++    G  +++   H 
Sbjct: 92  DEGCLRAVFELYGM-PYPGYRFYCTCRASRRTFGTQLPNHQLHTVSAACGFDLANH--HH 148

Query: 160 ALLDSHLLSDVYIKMM 175
           AL D+   + + +K++
Sbjct: 149 ALADAEACARIALKIL 164


>gi|293374981|ref|ZP_06621276.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909]
 gi|325843349|ref|ZP_08167932.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1]
 gi|292646391|gb|EFF64406.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909]
 gi|325489378|gb|EGC91751.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1]
          Length = 306

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 7/148 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K D    IG   + +     + +   + PN  + +P  + +HGI 
Sbjct: 1   MNFIAIDFETA--NEKRDSACSIGLTVVKNNQIIEQKYY-LIKPNELRFAPINISIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +K+  +F  ++ E   +F   N   +AHNA FD+  +   L   +  P    R   T
Sbjct: 58  ASDVKNAKTFDQLWPELLPYF--TNNIIMAHNAAFDLSVLRHTLDAYHI-PYPNCRYGCT 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITIS 153
           + ++R   P   N  LN++    G+  +
Sbjct: 115 MILSRNFFPHLENAKLNTVNHHLGLEFN 142


>gi|218709810|ref|YP_002417431.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32]
 gi|218322829|emb|CAV19006.1| DNA polymerase III polC-type [Vibrio splendidus LGP32]
          Length = 238

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 25/201 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
              +++  +  D ETTGL+   D II IG V   L+     +     L P  +K   +++
Sbjct: 41  TPLSEVTFLAVDFETTGLNPNKDGIITIGLVPFTLNRIYLRQAKHWTLRPK-QKLEEDSV 99

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLD 119
            +HGIT   + D P  S +  E  +         + H  + +  F++  L+ R+ +    
Sbjct: 100 VIHGITHNDIIDAPDLSEVLDEILESMG--GHIPVVHYRRIERDFLDNALKVRLGEGIEF 157

Query: 120 PSRIIDTLS----IARRKHPSSRNDLNS---LCKRYGIT-----ISHRSKHGALLDSHLL 167
           P  ++DTL     I  +      N L        R G +     +   + H AL D+   
Sbjct: 158 P--VLDTLEIESQIQNKLAGGLWNKLKGKKPASVRLGQSRRRYHLPDYTPHHALTDAIAT 215

Query: 168 SDVYIKMMVGGSQINFGFKTN 188
           +++        +QI   F  +
Sbjct: 216 AELL------QAQIAHHFSPD 230


>gi|241763877|ref|ZP_04761921.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
 gi|241366845|gb|EER61267.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
          Length = 219

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 67/178 (37%), Gaps = 17/178 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+ ++D II IGAV +      T+   ++ + P+ +  S +++++H +  
Sbjct: 42  WVALDCETTGLNVRSDEIIAIGAVRIAGNRILTSERLELLVRPD-KGVSADSVRIHRLRS 100

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDT 126
             +               F   +    + +  +FDV  +N  L   +      P   +  
Sbjct: 101 RDVAQGLPLQEAMDRLLRFIGSR--PLVGYYLEFDVAMLNRALWPLLGMGLPQPKIEVSA 158

Query: 127 LSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L    +                    +L    G+    R  H AL D+ + +  ++K+
Sbjct: 159 LYYEYKFRQLPPYQQQGNADIDLRFATLMDDLGLP--QREAHDALNDAVMAALAFVKL 214


>gi|86146291|ref|ZP_01064616.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
 gi|85836002|gb|EAQ54135.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
          Length = 238

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 25/201 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
              +++  +  D ETTGL+   D II IG V   L+     +     L P  +K   +++
Sbjct: 41  TPLSEVTFLAVDFETTGLNPNKDGIITIGLVPFTLNRIYLRQAKHWTLRPK-QKLEEDSV 99

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLD 119
            +HGIT   + D P  S +  E  +         + H  + +  F++  L+ R+ +    
Sbjct: 100 VIHGITHNDIIDAPDLSEVLDEILESMG--GHIPVVHYRRIERDFLDNALKVRLGEGIEF 157

Query: 120 PSRIIDTLS----IARRKHPSSRNDLNS---LCKRYGIT-----ISHRSKHGALLDSHLL 167
           P  ++DTL     I  +      N L        R G +     +   + H AL D+   
Sbjct: 158 P--VLDTLEIESQIQNKLAGGLWNKLKGKKPASVRLGQSRRRYHLPDYTPHHALTDAIAT 215

Query: 168 SDVYIKMMVGGSQINFGFKTN 188
           +++        +QI   F  +
Sbjct: 216 AELL------QAQIAHHFSPD 230


>gi|220980061|emb|CAP72253.1| Hypothetical protein [Escherichia coli LF82]
 gi|323934293|gb|EGB30715.1| exonuclease [Escherichia coli E1520]
          Length = 185

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 72/172 (41%), Gaps = 7/172 (4%)

Query: 7   MRKIV--FDIETTGLDS-KNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62
           M  IV   DIE+TGLD     +IIEI       +  +   + ++   P  R   P+A  +
Sbjct: 1   MTTIVAGIDIESTGLDFLAGHKIIEIAITRYELETQRHIDSLEMRFNP-RRNIDPKAQAV 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
           HGI+ E L  +P  S+  SE   +    +A W+AHN   FD+ FI  E         D  
Sbjct: 60  HGISLEQLAAEPLLSNHASEIGAYMEACSA-WVAHNGEAFDIPFIRHEFSGYGVRLPDVP 118

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            I   LS         R  L  L    G    H   H AL D++L+   + K
Sbjct: 119 VIDTMLSGLWATEDGKRPRLEELAFSLGFIYDHAKAHSALYDTNLMMQCFFK 170


>gi|29828689|ref|NP_823323.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
           MA-4680]
 gi|29605793|dbj|BAC69858.1| putative DNA polymerase III epsilon subunit [Streptomyces
           avermitilis MA-4680]
          Length = 240

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 15/163 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   I FD+ETTG D +  RI+    +E+       R    +L   G +   +A+ 
Sbjct: 1   MAWHEQLLIGFDLETTGTDPREARIVTGAVIEVKGQEPVGRR--EWLADPGVEIPADAVA 58

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGIT+E    +      +                  +A+NA FD+  ++AEL+R     
Sbjct: 59  VHGITNERAAAEGGPPDRVAESLAQTLVGYWRTGVPVVAYNATFDLTLLSAELRRYGLPS 118

Query: 118 L-------DPSRIID--TLSIARRKHPSSRNDLNSLCKRYGIT 151
           L       DP+ +ID  T+     ++   + +L ++C  YG+ 
Sbjct: 119 LRERLDGRDPAPVIDPYTIDRWVDRYRRGKRNLEAVCTEYGVP 161


>gi|254240149|ref|ZP_04933471.1| exonuclease [Pseudomonas aeruginosa 2192]
 gi|126193527|gb|EAZ57590.1| exonuclease [Pseudomonas aeruginosa 2192]
          Length = 201

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 69/181 (38%), Gaps = 19/181 (10%)

Query: 11  VFDIETTGL--------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +FD ETTG+        D     I+E+ A+       T   F+  + PNG + +PE   +
Sbjct: 5   IFDFETTGIPEWKLPSEDPCQPHIVEVAALLCDAAGNTIDRFEAIVRPNGWEITPEMTAI 64

Query: 63  HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD----- 116
           HGI+ E   D   S +     F    N + A   AHN  FD       L R   +     
Sbjct: 65  HGISHEQAMDVGISEAEALEGFLA-INGRAARRAAHNISFDDRITRIALMRYQDEDAANA 123

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR---SKHGALLDSHLLSDVYIK 173
             +      T   +R +    RN L +L + Y    +       H A+ D+   + +Y  
Sbjct: 124 FKESGEKFCTCYRSRAQVALPRNKLPTLAEAYK-HFTGEDLVEAHRAMPDAQACARIYFA 182

Query: 174 M 174
           +
Sbjct: 183 L 183


>gi|229175172|ref|ZP_04302688.1| DNA polymerase III subunit epsilon [Bacillus cereus MM3]
 gi|228608308|gb|EEK65614.1| DNA polymerase III subunit epsilon [Bacillus cereus MM3]
          Length = 280

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 64/146 (43%), Gaps = 11/146 (7%)

Query: 32  VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ- 90
           +  ++  +   T    + P         + +HGIT   +KD  +F     EF++ + ++ 
Sbjct: 1   MVFVENGEIIDTLYELINPE-EDFDYYNIAIHGITPSDVKDALTF----PEFYEAYKKRF 55

Query: 91  -NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRY 148
            N   +AH   FD   +   L+R    P   + ++ T  ++++     +   L  LCK +
Sbjct: 56  ENKLLVAHYLPFDGYALRDSLRRYEL-PSVYNNLLCTYQLSKKLITGEKSYTLKYLCKHF 114

Query: 149 GITISHRSKHGALLDSHLLSDVYIKM 174
            I +++   H AL D+   + + +++
Sbjct: 115 SIELNNH--HNALEDARACAQLMLQL 138


>gi|326385547|ref|ZP_08207181.1| transposase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209881|gb|EGD60664.1| transposase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 307

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 73/169 (43%), Gaps = 12/169 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ET    ++   I +IG V   D  +    ++  + P   + +P  + +HGIT +
Sbjct: 33  FVVVDVETA--CARVSSICQIGIVGFRDGREM-FAYETLVDPRD-EFAPFNVAIHGITAD 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +P+F  I          +    +AH + FD   + A    ++  P+  +  +D++ 
Sbjct: 89  RVDGEPTFDDIHGIVDAHL--RGRVTVAH-SLFDKSALAAAC-GVSGQPVIETEWLDSVR 144

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +A+   P    + LN L +  GI       H AL D+     V ++ + 
Sbjct: 145 VAKLAWPQLQSHRLNVLARFLGIE---HRHHDALSDARAAGMVLVRAIE 190


>gi|197336459|ref|YP_002157302.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11]
 gi|197317949|gb|ACH67396.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11]
          Length = 238

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 75/203 (36%), Gaps = 27/203 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
              + +  +  D ETTGLD+  + II IG V   L+     ++   F+          ++
Sbjct: 41  TPLSDIEFVALDFETTGLDANQNSIISIGLVPFTLERIFCRQSQHWFVKAQD-SLEENSV 99

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGIT   L+  P    I  +  D         + H  + +  F +  L+ +  + +  
Sbjct: 100 VIHGITHSDLQGAPDLRRILEQVLDALA--GKVVVVHYRRIERDFFDTNLRSLIGEGI-V 156

Query: 121 SRIIDTLS--------------IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             ++DT+                  +        L +   RYG+       H AL D+  
Sbjct: 157 FPVVDTMQIEGDYQQEQAKGLINWLKGKRPESIRLANTRLRYGLP--SYPPHHALTDAIA 214

Query: 167 LSDVYIKMMVGGSQINFGFKTNE 189
            ++++       +Q+ + F  N+
Sbjct: 215 TAELF------QAQVRYHFSAND 231


>gi|87118535|ref|ZP_01074434.1| exonuclease [Marinomonas sp. MED121]
 gi|86166169|gb|EAQ67435.1| exonuclease [Marinomonas sp. MED121]
          Length = 230

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 14/175 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D+ETTGLD+  DR+I +G V + + +    + +  L  NG     + + +H ITD+
Sbjct: 38  YLVLDMETTGLDATKDRVISLGWVLIKNGAIKLSSARHILLDNG-PVDEKTVAIHMITDQ 96

Query: 69  FLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            + +   + S           ++    + H+A  +  F+    Q    +PL    ++DTL
Sbjct: 97  DISELGRNPSVAMRYLRQLLLDK--VLVVHHAPIEQAFLEKLWQAHKLNPL-TQVMLDTL 153

Query: 128 SIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++ R      +         L    KRYG+       H AL D+   +++ +  +
Sbjct: 154 AMERDTQMRKQYMLTSDAFRLGECRKRYGLP--DYQGHDALGDAQATAELLLAQL 206


>gi|323492075|ref|ZP_08097237.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
 gi|323313636|gb|EGA66738.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
          Length = 210

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 72/178 (40%), Gaps = 11/178 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHG 64
           K   +  D ETT LD     ++ I A +++D      + F+V L    +     ++K+H 
Sbjct: 27  KGEYVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLR-APQSLDSGSVKIHK 85

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I  + L D         +  +F   +    + ++ ++D   ++   Q+    PL    I 
Sbjct: 86  IRHQDLVDGIDEKQALIQLLEFIGNR--PLVGYHIRYDKKILDLACQKQLGFPLPNPLIE 143

Query: 125 DTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +     +      N      L+++C+   + +  +  H AL D+   + V++++  G
Sbjct: 144 VSQIYHDKLEKHLPNAYFDLSLDAICRHLDLPMQDK--HDALQDAISAALVFVRLTKG 199


>gi|329767022|ref|ZP_08258550.1| hypothetical protein HMPREF0428_00247 [Gemella haemolysans M341]
 gi|328837747|gb|EGF87372.1| hypothetical protein HMPREF0428_00247 [Gemella haemolysans M341]
          Length = 616

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIE T    +   II+  A +L    K   +   ++ P  ++ SP   +L GI ++
Sbjct: 5   FCVVDIELT----EEKEIIQFSATKLDQNFKEIESINYYIKPK-KQVSPFVTELTGINND 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +K  F  +  E +DF  E     + H    D   +      +          +DT+ 
Sbjct: 60  MLSEKLYFEDVAKELYDFIKED--ILVCHGLPSDYVILKKRFHDVGIRY-HAKMSLDTVE 116

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +AR   P      L+ L     +  S    H A +D  +  ++  ++
Sbjct: 117 LARLFMPTQESYRLSDLSNSLAL-YSGDGYHNAAIDVQVTVELLKEI 162


>gi|328474758|gb|EGF45563.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
          Length = 239

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 23/188 (12%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63
           +++  +  D ETTGL+ +   II IG V                + P  +K   +++ +H
Sbjct: 45  SEVEFVALDFETTGLNPEKHDIITIGLVPFNLRRIFLRDARHWKVRPQ-KKLDEDSVIIH 103

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSR 122
           GIT   L D P  S I  E     + +    + H  + +  F++  L+ RI +    P  
Sbjct: 104 GITHSELIDAPDLSDILGELLPCLSGK--IIVVHYRRIEREFLDQALKARIGEGIEFP-- 159

Query: 123 IIDTLS-------------IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168
           ++DTL                R K     +  L    +RYG+     S H AL D+   +
Sbjct: 160 VLDTLQIEENIQKRSAGGIWNRLKGKRPESLRLAQSRRRYGLP--DYSPHHALTDAIATA 217

Query: 169 DVYIKMMV 176
           ++    M 
Sbjct: 218 ELLQAQMA 225


>gi|15640327|ref|NP_229954.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|153822831|ref|ZP_01975498.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
 gi|153827159|ref|ZP_01979826.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-2]
 gi|153831076|ref|ZP_01983743.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|227080513|ref|YP_002809064.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           M66-2]
 gi|229524741|ref|ZP_04414146.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|9654711|gb|AAF93473.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126519649|gb|EAZ76872.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
 gi|148873443|gb|EDL71578.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|149738956|gb|EDM53274.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-2]
 gi|227008401|gb|ACP04613.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           M66-2]
 gi|227012158|gb|ACP08368.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229338322|gb|EEO03339.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
          Length = 223

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 73/175 (41%), Gaps = 11/175 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD K   ++ I A +++D      + F+V LC   +     ++++H I  
Sbjct: 44  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLC-APQSLDSGSVRIHRIRH 102

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L D  S      +  +F   +    + ++ ++D   ++   ++    PL    I  + 
Sbjct: 103 QDLHDGLSEKEALLQLIEFIGNR--PLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQ 160

Query: 128 SIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
               +      N      L ++C+   + +  +  H AL D+   + V++++  G
Sbjct: 161 IYHDKLEKHLPNAYFDLSLEAICRHLDLPLQDK--HDALQDAIAAALVFVRLTKG 213


>gi|269838290|ref|YP_003320518.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787553|gb|ACZ39696.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
          Length = 335

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 16/172 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL   +  I++I  V+       N      + P       EA ++HGIT++ 
Sbjct: 25  VYLDTETTGLGP-DAEIVDIAVVDQAGRVLLN----SLVQPRN-PIPAEATRVHGITNKM 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P +  ++ E      +     I +NA +D   I+   +R              L+ 
Sbjct: 79  VMNAPEWPEVYQELARIIQDYPT-LIIYNAAYDRRLISQTCRRYGISVPRADWQCAMLNY 137

Query: 130 A-------RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           A        R      + L       G  +     H AL D+     V + M
Sbjct: 138 AAYRGEWNARYGNHRWHTLEKAAIETGAPMP--PTHRALDDAQACRHVVLSM 187


>gi|213964476|ref|ZP_03392676.1| DNA polymerase III epsilon subunit [Corynebacterium amycolatum
           SK46]
 gi|213952669|gb|EEB64051.1| DNA polymerase III epsilon subunit [Corynebacterium amycolatum
           SK46]
          Length = 195

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 12/173 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNS-PEALKLHGIT 66
            +  D+ETTGLD   D+++ IG V +            + + P   + S  E+  +HG+T
Sbjct: 21  WLAVDVETTGLDPSKDQLLSIGWVAVEGRDIVLEESGHLIIRPEREEVSVGESATVHGLT 80

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD------P 120
           D+ +           +  +    +  + +AH A+ +VGF++   ++      D       
Sbjct: 81  DDMVATGVEAEVAVGKLLEAL--RGRKLLAHYARMEVGFLDPLCRKYFDARFDVPVADTM 138

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +R  D +  A R+       L SLC +YGI       H A  D+   + V++ 
Sbjct: 139 TREYDAILRANREPVRDELRLWSLCDKYGIP--RFKAHHAFNDALACALVWLA 189


>gi|149910647|ref|ZP_01899284.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
 gi|149806274|gb|EDM66250.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
          Length = 239

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 74/204 (36%), Gaps = 30/204 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--NRTFQVFLCPNGRKNSPEA 59
            +   +  +  D ETTGLDS+ + II IG V   +  +    +    ++ P   K    +
Sbjct: 41  TKLGDIDFVALDFETTGLDSEQNSIISIGLV-PFNLQRIFCRQAQHWYIEPED-KLKENS 98

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +HGIT   LK  P    I     D         + H  + +  F +  L R   +   
Sbjct: 99  IIIHGITHTDLKGAPDLLRILEPVLDALA--GKVVVVHYRRIERDFFDNHL-RSFINEGI 155

Query: 120 PSRIIDTLSIARRKHPSSRND---------------LNSLCKRYGITISHRSKHGALLDS 164
              +IDT+ I      S  N                L +   RY +       H AL D+
Sbjct: 156 VFPVIDTMQIEADVQESQNNSFFSLFKPKKRQESIRLANSRARYNLP--AYPPHDALTDA 213

Query: 165 HLLSDVYIKMMVGGSQINFGFKTN 188
              +++        +QI++ F  +
Sbjct: 214 IATAELL------QAQIHYHFSPD 231


>gi|158424105|ref|YP_001525397.1| putative exonuclease [Azorhizobium caulinodans ORS 571]
 gi|158330994|dbj|BAF88479.1| putative exonuclease [Azorhizobium caulinodans ORS 571]
          Length = 334

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 73/199 (36%), Gaps = 19/199 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTN---RTFQVFLCPNGRKNSPEALKLHG 64
           ++ D ETTGLD   D +IE+G V     +         TF     P     SP   KL G
Sbjct: 83  VIVDTETTGLDHTRDEVIELGMVAFTYREGGAIGDVVDTFSALREPT-VPISPVITKLTG 141

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT E +  +       + F     +  +  IAHNA+FD  F    ++  +  P       
Sbjct: 142 ITPEMVAGQSIDLEAAARFI----QPASIVIAHNARFDRPFCEHLVEGFDVKPW----AC 193

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
             + +           L  L  + G+     + H A+ D H L +V    +   +   FG
Sbjct: 194 SVVEVPWADFGFEGTKLGYLIGQCGM---FHNGHRAVDDCHALLEVLAAPLKEATGTAFG 250

Query: 185 --FKTNEDRFFKEEKKTVP 201
              +T     F+   +  P
Sbjct: 251 RLLETARRPRFRVWAENSP 269


>gi|329938978|ref|ZP_08288352.1| exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329301863|gb|EGG45756.1| exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 242

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 16/168 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    +     FD ETTG+D + DRI+    V         R  +  + P G     EA 
Sbjct: 1   MASWYEGPLAAFDTETTGVDVEGDRIVSAAVVVQEAAGARPRVRRWLVDP-GVPVPAEAT 59

Query: 61  KLHGITDEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            +HG+T+E L+       P    +  E   +        +  NA FD+  ++ EL+R   
Sbjct: 60  AVHGLTEEHLRRNGRWPAPVMREMADE-LQYLAAAGRPLVVMNAPFDLTLLDRELRRHRA 118

Query: 116 DPLDPS-------RIID--TLSIARRKHPSSRNDLNSLCKRYGITISH 154
             LD         R++D   L     ++   R  L  LC  YG+T+  
Sbjct: 119 SSLDRWLAASAPLRVLDPRVLDRHLDRYRKGRRTLTDLCAHYGVTLEG 166


>gi|299142830|ref|ZP_07035958.1| exonuclease [Prevotella oris C735]
 gi|298575698|gb|EFI47576.1| exonuclease [Prevotella oris C735]
          Length = 284

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 15/171 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             K    V DIET  +  +      +G V + +     + F   + P     +     +H
Sbjct: 1   MEKHTFTVIDIET--MTPERTSACALGLVRVEND-VIVQKFYSLIKPIPDDRTVTNTHVH 57

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E +++ P+F  ++     + + Q     AHN  FD+  +           +  + +
Sbjct: 58  GITPEMVENAPTFQELWPTIEHYISGQ--VLAAHNTSFDLDVLKKVSAHYGI-TIPITGV 114

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +DT          +   L+  CK   + +     H AL D+   +++ + +
Sbjct: 115 VDT-------FSLTHLSLDETCKVLHVDL--GKHHDALCDATACAEIILVL 156


>gi|94267095|ref|ZP_01290732.1| Exonuclease [delta proteobacterium MLMS-1]
 gi|94268501|ref|ZP_01291197.1| Exonuclease [delta proteobacterium MLMS-1]
 gi|93451582|gb|EAT02387.1| Exonuclease [delta proteobacterium MLMS-1]
 gi|93452187|gb|EAT02848.1| Exonuclease [delta proteobacterium MLMS-1]
          Length = 161

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 10/165 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + + +    +G V +       R +   + P           +HG+  E
Sbjct: 4   FAAIDFETA--NYRRESACAVGVVLVEQGRIARRIYH-LIRPPSSWFV--FTHIHGLGWE 58

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  PSF  I+ E             AHNA FD G +NA        P      + T+ 
Sbjct: 59  DVRRAPSFGEIWPEIAAELAGVE-FLAAHNASFDRGVLNACCHAHGLAP-PSLPFVCTVQ 116

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +AR++       L+ +C+R  I ++H   H A  D+   + + I 
Sbjct: 117 LARQRWNIRPTKLSDVCRRLDIALNH---HQADSDAEACARIVIA 158


>gi|281356111|ref|ZP_06242604.1| Exonuclease RNase T and DNA polymerase III [Victivallis vadensis
           ATCC BAA-548]
 gi|281317480|gb|EFB01501.1| Exonuclease RNase T and DNA polymerase III [Victivallis vadensis
           ATCC BAA-548]
          Length = 205

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 9/151 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN--GRKNSPEALKLHGIT 66
            +  D ET   D  +   + +      D ++   +++  + P+   R  S   + +HGIT
Sbjct: 2   ILALDFETANSDPGSVCAVGLA---WFDGARITGSWESLIRPHRSCRWFSRLNIAVHGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +   P +  ++ E    F    +  IAHNA FDV  +   L+     P        T
Sbjct: 59  PEMVAQAPEWGDVWPELAPHFA--GSMVIAHNAAFDVPVLLRTLELYGFAP-PEFDFFCT 115

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRS 156
              ARR  P    + LN++    G    H  
Sbjct: 116 CKSARRVWPGLENHKLNTVSDFLGWEFRHHD 146


>gi|213586760|ref|ZP_03368586.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 192

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 21/171 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL   +  I+EI  ++   +   N      + P  +    EA+ +HGIT+E
Sbjct: 26  YLFIDTETTGL-GDDAEIVEICIIDSHGFIMLN----TLIKPT-KPIPDEAIAIHGITNE 79

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+++ I     + F      ++ +NA FD+  I        +       ++   S
Sbjct: 80  MVAFAPAWTDICGAVEELFRRFG--FVIYNADFDLRLIRQTYALNERPSEGAPWMLAAHS 137

Query: 129 -IARRKHPSSR-----------NDLNSLCKRYGITISHRSKHGALLDSHLL 167
             A + +   R           + L       G+ +  +  H AL D  + 
Sbjct: 138 VCAMKLYAEYRGEPGRFNGYKWHKLVDAAAHEGVVVEGK-AHRALADCKMT 187


>gi|297581761|ref|ZP_06943683.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534168|gb|EFH73007.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 209

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 73/175 (41%), Gaps = 11/175 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD K   ++ I A +++D      + F+V LC   +     ++++H I  
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLC-APQSLDSGSVRIHRIRH 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L D  S      +  +F   +    + ++ ++D   ++   ++    PL    I  + 
Sbjct: 89  QDLHDGLSEKEALIQLIEFIGNR--PLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQ 146

Query: 128 SIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
               +      N      L ++C+   + +  +  H AL D+   + V++++  G
Sbjct: 147 IYHDKLEKHLPNAYFDLSLEAICRHLDLPLQDK--HDALQDAIAAALVFVRLTKG 199


>gi|62390951|ref|YP_226353.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326290|emb|CAF20452.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease
           [Corynebacterium glutamicum ATCC 13032]
          Length = 476

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 13/157 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEA-LKLH 63
           +  + FD+ET   +     I +IG V+ +D      + + +LC  P       E  + +H
Sbjct: 122 LNFVGFDVETA--NDDWGSICQIGLVKYVDG--VEESSESWLCTPPESLNFFNEINIGIH 177

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E + D+P F+ +  +  +F    +   +AHNA+FD   ++        D +     
Sbjct: 178 GITPEMVADQPRFADLVPKMVEFVG--DLPLVAHNAQFDFTALSRACAASGID-VPEMIY 234

Query: 124 IDTLSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHG 159
             +L++AR  K     + L ++    G  +  ++ H 
Sbjct: 235 GCSLTLARNEKLQVENHKLPTVASHLGFEL--KNHHD 269


>gi|23308895|ref|NP_601316.2| DNA polymerase III epsilon subunit [Corynebacterium glutamicum ATCC
           13032]
 gi|21324886|dbj|BAB99509.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
           [Corynebacterium glutamicum ATCC 13032]
          Length = 381

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 13/157 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEA-LKLH 63
           +  + FD+ET   +     I +IG V+ +D      + + +LC  P       E  + +H
Sbjct: 27  LNFVGFDVETA--NDDWGSICQIGLVKYVDG--VEESSESWLCTPPESLNFFNEINIGIH 82

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E + D+P F+ +  +  +F    +   +AHNA+FD   ++        D +     
Sbjct: 83  GITPEMVADQPRFADLVPKMVEFVG--DLPLVAHNAQFDFTALSRACAASGID-VPEMIY 139

Query: 124 IDTLSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHG 159
             +L++AR  K     + L ++    G  +  ++ H 
Sbjct: 140 GCSLTLARNEKLQVENHKLPTVASHLGFEL--KNHHD 174


>gi|145218937|ref|YP_001129646.1| exonuclease, RNase T and DNA polymerase III [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205101|gb|ABP36144.1| Exonuclease, RNase T and DNA polymerase III [Chlorobium
           phaeovibrioides DSM 265]
          Length = 194

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 75/182 (41%), Gaps = 20/182 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFL 70
           FD+ETTG+D + + II+   +  +D +    +F++ + P  G +   EAL++ G T E +
Sbjct: 7   FDLETTGIDPERNGIIQFAGLAEIDGA-VVESFEIKMQPHEGAQIDDEALEVTGFTREAI 65

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEW--------IAHNAKFDVGFINAELQR---INKDPLD 119
                 +  + +  DF     + +          +N  FD+ F++   +R          
Sbjct: 66  PTFTPHAEAYRQIDDFLARHVSRFDRNDKFYPAGYNVHFDLEFLSRMFKRFDQYGLGSFT 125

Query: 120 PSRIIDT-----LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             R++D      L     +     + L + C  +G+ + +   H AL D      +  ++
Sbjct: 126 NWRMLDPQPILNLMDYMGRISLPNHRLQTACDHFGVKLEN--AHDALADITATRALMQRL 183

Query: 175 MV 176
           + 
Sbjct: 184 LE 185


>gi|302557603|ref|ZP_07309945.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302475221|gb|EFL38314.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 240

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 15/165 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   I FD+ETTG D +  RI+    +E+       R    +L   G     +A+ 
Sbjct: 1   MGWHRELLIGFDLETTGTDPREARIVTGAVIEVRAGEPLGRR--EWLADPGVPIPEDAVA 58

Query: 62  LHGITDEFLKD----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGI+ E            +   +     + +     +A+NA FD+  ++AEL+R     
Sbjct: 59  VHGISGERAAAEGRPADQVADAIAGVLTAYWQTGVPVVAYNAAFDLTLLSAELRRYGLPS 118

Query: 118 L-------DPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITIS 153
           L       +P+ +ID  T+  A  ++   + +L ++C  YG+ + 
Sbjct: 119 LSDRLGGIEPAPVIDPYTIDRAVDRYRRGKRNLEAVCAEYGVVLD 163


>gi|327332353|gb|EGE74089.1| putative DNA polymerase III epsilon subunit [Propionibacterium
           acnes HL097PA1]
          Length = 210

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 63/171 (36%), Gaps = 15/171 (8%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  D ET     G+ +      ++  V++LD    +R     + P    +  E   LHG
Sbjct: 43  FVAVDFETANRMGGVSA-----CQVAMVKVLDGQIVDR-LNTLIRPPKGWDFFEFTYLHG 96

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+   + + P +++I +    F +   A   AHNA FD        +      L P+   
Sbjct: 97  ISATDVAEAPGWTNIANAVSHFVD--GATVYAHNAAFDSRVWRQLDEHFGTTTL-PAPFF 153

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +   A+R  P      L ++           + H A  D+   + +  ++
Sbjct: 154 CSYRTAQRLIPGLPNYKLPTVL-HACAPNYQLNHHRADSDAEACALIVCEL 203


>gi|302841163|ref|XP_002952127.1| hypothetical protein VOLCADRAFT_92718 [Volvox carteri f.
           nagariensis]
 gi|300262713|gb|EFJ46918.1| hypothetical protein VOLCADRAFT_92718 [Volvox carteri f.
           nagariensis]
          Length = 1059

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 56/157 (35%), Gaps = 19/157 (12%)

Query: 37  YSKTNRTFQVFLCPNGR----KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF----- 87
                 TF   + PNGR    +  P    L GIT + L   P    +   F  +      
Sbjct: 7   RQLIGDTFSSLVNPNGRGRPVQMDPRVTSLTGITPDMLLHAPGEPWVALAFLCWLYQRCR 66

Query: 88  --NEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSIARRK-----HPSSRN 139
                    + HN + +D  F+   L R          ++D+L +ARR            
Sbjct: 67  AGGGVRPALVGHNLRVYDSPFLARMLARQGCLVPYSWCMVDSLRLARRWKLWSSRGGGDF 126

Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            L SL + Y I    R +H AL D+ +  DV   M+ 
Sbjct: 127 KLQSLRELYNIP--RRDEHRALPDALVTVDVLAAMVR 161


>gi|255326994|ref|ZP_05368070.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa ATCC 25296]
 gi|255296211|gb|EET75552.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa ATCC 25296]
          Length = 228

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D    RI+    + L       R  +    P G +    A  +HGIT E+ +
Sbjct: 8   FDLETTGVDVTTARIVTASLILLDPQGNVVRRGEWLADP-GVEIPAGAAAVHGITTEYAR 66

Query: 72  DKP-SFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINK--DPLDPSRIID 125
           +       +  E               IA NA +D   ++ E+ R N     L P  ++D
Sbjct: 67  EHGRPAREVVWELAGAIGALNLDGVPIIAFNAAYDFSVLHHEMLRHNIANGELPPGVVLD 126

Query: 126 TLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-IN 182
              + +   P  R    L  L   YG+++ +   H +  D+     + +K+     + +N
Sbjct: 127 PYVLHKHVIPRKRGKRTLEVLATEYGVSLEN--AHTSADDALAAERLLVKLTEQFPEVLN 184

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
              +   ++  +   +   +     R +P
Sbjct: 185 VDARQLHEQQIQWAAEQAASFQAWLRTQP 213


>gi|153830906|ref|ZP_01983573.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|229515666|ref|ZP_04405125.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|148873606|gb|EDL71741.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|229347435|gb|EEO12395.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
          Length = 236

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 18/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            + +L    +    E++  HGIT   
Sbjct: 48  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQARYWLVKPSQPLEEESIVFHGITHSE 107

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   +   +  E  +  N      + H    +  F+      I  + ++   ++DTL I
Sbjct: 108 LQYAQAPEQVLKELLEALN--GKIVVVHFRHIEREFLRQISLNIWGEAIE-FPVLDTLEI 164

Query: 130 ARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R+               P     L     RY +     S H AL D+   ++++  
Sbjct: 165 ERQLLDKQRSLWQRITRRPLPSIRLGQSRMRYHLPPY--SPHHALTDAIATAELFQA 219


>gi|224535480|ref|ZP_03676019.1| hypothetical protein BACCELL_00343 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522946|gb|EEF92051.1| hypothetical protein BACCELL_00343 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 243

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 14/172 (8%)

Query: 15  ETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDK 73
           ETTG     DRI+EI  +++  + ++  +T +  + P        A  +HGI D+ + D 
Sbjct: 2   ETTGTSINVDRIVEICYLKVHPNGNEEAKTLR--INPEMH-IPEGASAVHGIYDKDVADC 58

Query: 74  PSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-LDPSRIIDTLSIAR 131
           P+F  +     +  + +  +    N  +FD+  +  E  R   D  L   + +D   I  
Sbjct: 59  PTFKEVARTIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDLSRRKFVDVQVI-- 114

Query: 132 RKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
             H   +  L++  K Y G  +     H A  D+    +V +  +   S++ 
Sbjct: 115 -FHKLEQRTLSAAYKFYCGKNLED--AHTAAADTQATYEVLMAQLDRYSELQ 163


>gi|121591065|ref|ZP_01678378.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           2740-80]
 gi|121729644|ref|ZP_01682121.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
 gi|147675462|ref|YP_001218570.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395]
 gi|153803140|ref|ZP_01957726.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-3]
 gi|153819596|ref|ZP_01972263.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
           8457]
 gi|229506903|ref|ZP_04396411.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229509276|ref|ZP_04398759.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229512692|ref|ZP_04402160.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|229516220|ref|ZP_04405668.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229520981|ref|ZP_04410402.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229527205|ref|ZP_04416598.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229606416|ref|YP_002877064.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236]
 gi|254851434|ref|ZP_05240784.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
 gi|255744098|ref|ZP_05418052.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262161990|ref|ZP_06031007.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262167979|ref|ZP_06035678.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262192561|ref|ZP_06050711.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|298500931|ref|ZP_07010733.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
 gi|121547098|gb|EAX57233.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           2740-80]
 gi|121628578|gb|EAX61057.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
 gi|124121331|gb|EAY40074.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-3]
 gi|126509852|gb|EAZ72446.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
           8457]
 gi|146317345|gb|ABQ21884.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229335213|gb|EEO00697.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229341866|gb|EEO06867.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229346646|gb|EEO11616.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229350202|gb|EEO15154.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|229353591|gb|EEO18528.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229356008|gb|EEO20927.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229369071|gb|ACQ59494.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236]
 gi|254847139|gb|EET25553.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
 gi|255738363|gb|EET93754.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262023512|gb|EEY42214.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262028368|gb|EEY47024.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262031606|gb|EEY50194.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|297540435|gb|EFH76494.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
 gi|327483170|gb|AEA77577.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4]
          Length = 209

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 73/175 (41%), Gaps = 11/175 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD K   ++ I A +++D      + F+V LC   +     ++++H I  
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLC-APQSLDSGSVRIHRIRH 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L D  S      +  +F   +    + ++ ++D   ++   ++    PL    I  + 
Sbjct: 89  QDLHDGLSEKEALLQLIEFIGNR--PLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQ 146

Query: 128 SIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
               +      N      L ++C+   + +  +  H AL D+   + V++++  G
Sbjct: 147 IYHDKLEKHLPNAYFDLSLEAICRHLDLPLQDK--HDALQDAIAAALVFVRLTKG 199


>gi|325102919|ref|YP_004272573.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
 gi|324971767|gb|ADY50751.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
          Length = 1454

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 81/233 (34%), Gaps = 25/233 (10%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R I+I      +           + P+G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPITDVDNWPRCIQIAWQLHDEMGNLIEHQDYLISPDGFDIPYD 61

Query: 59  ALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
           A ++HGI+ +  +++      I  +F +  + +    +  N  FD+  + AE  R   + 
Sbjct: 62  AERIHGISTDLAREQGVPLLEILDKFNEALS-KTKFVVGQNIGFDINIMGAEFHRYGVES 120

Query: 117 PLDPSRIIDTLS--IARRKH----PSSRNDLNSLCK----RYGITISHRSKHGALLDSHL 166
            L    ++DT +   A           R  L +L +     + +  +    H A  D   
Sbjct: 121 ALSKLPVLDTCTEITANLLQLPGGRGGRFKLPTLTELHEYLFNVPFA--EAHNATADVEA 178

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +  +++++          + +   F K ++     I  L          +  
Sbjct: 179 TTRCFLELIKREVFTVEELQVDTTYFLKFQEYNAGIIQPLGLQHVNLKEASDA 231


>gi|84393001|ref|ZP_00991768.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
 gi|84376355|gb|EAP93236.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
          Length = 238

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 25/201 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
              +++  +  D ETTGL+   D II IG V   L+     +     L P  +K   +++
Sbjct: 41  TPLSEVTFLAVDFETTGLNPNKDGIITIGLVPFTLNRIYLRQAKHWTLRPK-QKLEEDSV 99

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLD 119
            +HGIT   + D P  S +  E  +         + H  + +  F++  L+ R+ +    
Sbjct: 100 VIHGITHNDIIDAPDLSEVLDEILESLA--GHIPVVHYRRIERDFLDNALKVRLGEGIEF 157

Query: 120 PSRIIDTLS----IARRKHPSSRNDLNS---LCKRYGIT-----ISHRSKHGALLDSHLL 167
           P  ++DTL     I  +      N L        R G +     +   + H AL D+   
Sbjct: 158 P--VLDTLEIESQIQNKLAGGLWNKLKGKKPASVRLGQSRRRYHLPDYTPHHALTDAIAT 215

Query: 168 SDVYIKMMVGGSQINFGFKTN 188
           +++        +QI   F  +
Sbjct: 216 AELL------QAQIAHHFSPD 230


>gi|115379647|ref|ZP_01466730.1| DNA polymerase III epsilon subunit [Stigmatella aurantiaca DW4/3-1]
 gi|310819920|ref|YP_003952278.1| exonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|115363357|gb|EAU62509.1| DNA polymerase III epsilon subunit [Stigmatella aurantiaca DW4/3-1]
 gi|309392992|gb|ADO70451.1| Exonuclease [Stigmatella aurantiaca DW4/3-1]
          Length = 219

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 12/172 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNG-RKNSPEALKLHGITD 67
              D+ETTGLD+    ++E+  + +   S K    ++  + P       PEAL + G +D
Sbjct: 32  CFVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEARVQPTRLADAHPEALAVCGYSD 91

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126
           E  +D  S   + +               HN  FD GF+    +R     P      +DT
Sbjct: 92  EEWRDALSLEEVLATVTPLLA--GTLVAGHNTSFDWGFLVEGYRRTALTLPSVDYHRLDT 149

Query: 127 LSIARRKHPSSRN---DLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKM 174
            S+A     +       LN+L + +GI   HR + H A+ D+    +V  ++
Sbjct: 150 ASLAWPLLATGEVESLSLNALARHFGI---HRPTPHRAMADARCALEVARRL 198


>gi|209550157|ref|YP_002282074.1| exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209535913|gb|ACI55848.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 196

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 10/162 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      +G +  ++  +  R  +  + P   + S   + +HGI 
Sbjct: 1   MKTIAIDFETA--NEQRGSACSVG-LAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D P F  +  EF +  +   A  IAHNA FD     A L  + +        + +
Sbjct: 58  PEHVEDAPEFPEVMDEFHE--DISGATMIAHNAAFDFSVWRASLD-LYRQSYPELTYLCS 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           L +A+R  P    + LN + +  G+   H   H A  D+ + 
Sbjct: 115 LKMAQRIWPHFLSHRLNLIAEHLGLRFVH---HNAAEDAVVC 153


>gi|254450798|ref|ZP_05064235.1| exonuclease [Octadecabacter antarcticus 238]
 gi|198265204|gb|EDY89474.1| exonuclease [Octadecabacter antarcticus 238]
          Length = 206

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 15/172 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
             R I  D+ET G       I +IG   + +     +T+ V + P      P   +LHGI
Sbjct: 18  PFRFIALDVETAGKTIAG--ICQIGLCFVSNTGAV-QTYSVLIEPE-EPFEPFNTELHGI 73

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +    +F  +++  +D  N  +   + H + FD   + +   R    P+  S   +
Sbjct: 74  SSDTVAGAGTFPEVYAALFDLLNTHS--LVQH-STFDEKALTSACARYGL-PMITSHWTN 129

Query: 126 TLSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++++AR+  P+ +    + L +L K  G+   H   H A  D+   + V ++
Sbjct: 130 SVTVARQAWPALKGAGGHGLANLKKHLGLEFHH---HDAGEDARASATVILR 178


>gi|329945803|ref|ZP_08293490.1| exonuclease [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528251|gb|EGF55229.1| exonuclease [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 258

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 81/229 (35%), Gaps = 28/229 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTN---RTFQVFLCPNGRKNSPEALKLHGITDE 68
           FD ETTG+D   DR++    V   +        ++   +L   G +    A  +HG+T E
Sbjct: 26  FDTETTGVDPGRDRLVTAALVWRAERRADGVRQQSVTTWLADPGVEIPEAASAVHGVTTE 85

Query: 69  FLK-DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDP------- 117
             + +    + + +E  D            I  NA +D+  +  EL R            
Sbjct: 86  RSRSEGRPVAEVLAEVSDHLVAAMTAGTPVIVFNASYDLTLMETELARHGLPTMRSRLGR 145

Query: 118 -LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            L P      L  A  ++   +  L  LC+ YG+ +     H A +D     D+   +  
Sbjct: 146 ELGPIADPLVLDRAVDRYRRGKRRLGDLCEVYGVHVD-EDLHTAEVDVAATLDILEALAT 204

Query: 177 GGSQIN-------FGFKTNEDRFFKEE-----KKTVPNISLLKRDKPLF 213
              QI+         F+    R + E       +  P+ S  +   PL 
Sbjct: 205 AHPQISELGPDELVAFQAQAHRTWAESFNEWLARKNPSRSPAQTAWPLP 253


>gi|297578875|ref|ZP_06940803.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297536469|gb|EFH75302.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 236

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 18/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            + +L    +    E++  HGIT   
Sbjct: 48  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQARYWLVKPSQPLEEESIVFHGITHSE 107

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   +   +  E  +         + H    +  F+      I  + ++   ++DTL I
Sbjct: 108 LQHAQAPEQVLKELLEAL--HGKIVVVHFRYIEREFLRQISLNIWGEAIE-FPVLDTLEI 164

Query: 130 ARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R+               P     L     RY +     S H AL D+   ++++  
Sbjct: 165 ERQLLDKQRSLWQRIARRPLPSIRLGQSRMRYHLPPY--SPHHALTDAIATAELFQA 219


>gi|169347300|ref|ZP_02866238.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552]
 gi|169293917|gb|EDS76050.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552]
          Length = 261

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 11/172 (6%)

Query: 6   KMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K + +V D ETTG++   ND ++++  V   D    N        P    + P A +++G
Sbjct: 2   KNKYVVLDFETTGVNRYHNDEVVQVAIVNQDDEVLINE----LCKPKHHFSWPSAQRING 57

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRI 123
           I+   +KDK  F S      + F+      + +N  F+ G +      I      DP + 
Sbjct: 58  ISPLMVKDKLCFESYIDRIIEIFDNSE-FIVCYNIAFEQGMLKNYGIDISKYVFKDPMKD 116

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +   R  H   +   L++  K +G      + H AL D       + ++
Sbjct: 117 FAYIYGERGYHGGYKWQSLSTCAKYFGYNF---AAHDALEDVKATRYCFEQI 165


>gi|15889361|ref|NP_355042.1| DNA polymerase III, epsilon subunit [Agrobacterium tumefaciens str.
           C58]
 gi|15157207|gb|AAK87827.1| DNA polymerase III, epsilon subunit [Agrobacterium tumefaciens str.
           C58]
          Length = 202

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 10/158 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      +G +  ++  +  R  +  + P   + SP  + +HGI 
Sbjct: 1   MKTIAIDFETA--NEERGSACSVG-LAWIEDGQIVRVEERLIRPRDMRFSPFNIAVHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++D P F  +  EF D  +   A  IAHNA FD   + A   +      D S  + +
Sbjct: 58  PRDVEDAPEFPEVMEEFID--DFHGATMIAHNAAFDFSVMRASFDKYRLSYPDLS-YLCS 114

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLD 163
           + IAR   P    + LN +     +   H   H A  D
Sbjct: 115 VKIARHVWPHLVSHKLNVIAHHLQLRFVH---HNAAED 149


>gi|77360378|ref|YP_339953.1| DNA polymerase III subunit epsilon [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875289|emb|CAI86510.1| putative DNA polymerase III, epsilon subunit [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 236

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 79/193 (40%), Gaps = 24/193 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLDS+ D I+ +G V         +  + ++    R    E++ +HGIT  
Sbjct: 47  FVAMDFETTGLDSEADDIVSVGLVPFNLQRIYCKHSRHWVVQPRRNLHEESIIIHGITHS 106

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P F+ I        +      + H A  +  F+N  L     + ++   ++DT+ 
Sbjct: 107 EVDDAPDFNRIIEPLLAALS--GKVVVVHYAAIERPFLNNALLLRLHEGIE-FALVDTMD 163

Query: 129 IARRKHPSSRN-------------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           I +R   + +               LN   KRY +   +   H AL D+   +++     
Sbjct: 164 IEKRALTARQGLIGRLFNSKIGSLRLNDCRKRYSLPAYNN--HNALTDALATAELL---- 217

Query: 176 VGGSQINFGFKTN 188
              +Q++  ++ +
Sbjct: 218 --QAQLSHHYRLD 228


>gi|329940244|ref|ZP_08289526.1| DNA exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329301070|gb|EGG44966.1| DNA exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 251

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 15/164 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   + FD+ETTG D    RI+    +E+ D          +L   G +   +A+ 
Sbjct: 1   MAWHRELLVGFDLETTGTDPYEARIVTGAVIEVRDGEPLGHR--QWLADPGVEIPEDAIA 58

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGIT+E    +      +     +            +A+NA FD+  + AEL+R     
Sbjct: 59  VHGITNERATAEGTPPDRVAESIAEVLTGYWRAGVPVVAYNAAFDLTLLGAELRRHGLPS 118

Query: 118 L-------DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
           L       DP+ ++D  +I RR  ++   + +L ++C  YG+ +
Sbjct: 119 LRERLDGADPAPVVDPYTIDRRVDRYRRGKRNLEAVCGEYGVVL 162


>gi|116255734|ref|YP_771567.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260382|emb|CAK03486.1| putative exonuclease/polymerase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 326

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 66/167 (39%), Gaps = 17/167 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+ +ND IIEIGAV     D         ++  L    R   PE  +L GI
Sbjct: 75  VILDTETTGLNHRNDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIPPEITRLTGI 134

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRII 124
           TD  ++ +     I           +   IAHNA FD  F  A  +    K        I
Sbjct: 135 TDAMVEGQ--LIDI-QSLRTLIEPADL-IIAHNAGFDRPFCEAFSKIFTGKAWACSVSEI 190

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           D    + R    ++  L  L  + G        H A+ D H L ++ 
Sbjct: 191 D---WSARGFEGTK--LGYLVGQAG---YFHEGHRAVDDCHALLEIL 229


>gi|229051643|ref|ZP_04195113.1| exonuclease [Bacillus cereus AH676]
 gi|228721754|gb|EEL73228.1| exonuclease [Bacillus cereus AH676]
          Length = 287

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 17/171 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           NK + ++ D ETTGL  + D+IIEI  ++L      N      + P       EA  +HG
Sbjct: 127 NKDQFVILDTETTGLTLR-DQIIEISVIDLAGKILLN----SLVKPTI-IIPAEATSIHG 180

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E + D PS+  I+ E  +         + +NA+FD+G I +     N       +  
Sbjct: 181 ITNEMVHDAPSWIEIYKELCEV--TAGKTLLIYNAEFDLGMIESTCI-TNNVEFKSFKST 237

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + +      S R   LN   K          KH A  D   + ++  ++
Sbjct: 238 CIMKMYADFIDSKRWISLNDATKL-------TVKHRAAADCFTVLELLQQL 281


>gi|119960742|ref|YP_948285.1| DNA polymerase III epsilon subunit [Arthrobacter aurescens TC1]
 gi|119947601|gb|ABM06512.1| putative DNA polymerase III epsilon subunit [Arthrobacter aurescens
           TC1]
          Length = 336

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 10/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLHGIT 66
               D ET   +        +G  ++             + P    +  E    ++HGI 
Sbjct: 5   FTAIDFETA--NGFRGSPCSVGLSKVR-GGVVVEEASWLMRPPENHDHFEFHNTRIHGIR 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +  +P F  +F E   F  +      AHNA FD+G I + L+            + T
Sbjct: 62  AEDVAGRPRFGELFPEIGAFIGDD--VLAAHNAAFDLGVIRSGLEVSGLAG-PAYDYVCT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + ++RR +    N L    +  G+ + +   H A  D+   + + + +
Sbjct: 119 VMLSRRCYSLVSNSLPYAAEEAGVPLVNH--HDAAEDARACAGILVDI 164


>gi|269967099|ref|ZP_06181167.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
 gi|269828358|gb|EEZ82624.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
          Length = 239

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 21/190 (11%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              +++  +  D ETTGL+ +   II IG V         R  + +     R    +++ 
Sbjct: 42  TPLSEVEFVALDFETTGLNPEKHDIITIGLVPFNLKRIFLRNSRHWKVRPQRALDEDSVI 101

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDP 120
           +HGIT   L D P  S I SE     + +    + H  + +  F++  L+ R+ +    P
Sbjct: 102 IHGITHSELIDAPDLSDILSELLPCLSGK--IIVVHYRRIEREFLDKALKSRLGEGIEFP 159

Query: 121 SRIIDTLS-------------IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHL 166
             ++DTL                R K     +  L    +RYG+     + H AL D+  
Sbjct: 160 --VLDTLHLEETIQQKRSGSLWERLKGKKPESVRLAQSRRRYGLP--DYTPHHALTDAIA 215

Query: 167 LSDVYIKMMV 176
            +++    + 
Sbjct: 216 TAELLQAQIA 225


>gi|225012068|ref|ZP_03702505.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium
           MS024-2A]
 gi|225003623|gb|EEG41596.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium
           MS024-2A]
          Length = 1436

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  K +          R I+I                  + P+G     +
Sbjct: 2   YLIFDTETTGLPKKWNAPLSDAENWPRCIQIAWQIHDAKGDLVWHENYLIKPDGYTIPYD 61

Query: 59  ALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-D 116
           + K+HGI+    +++    + +  +F       +   + HN  FD   + AE  R +  D
Sbjct: 62  SEKIHGISTALAEEQGIPLAEVLEKFHAALRTVD-FVVGHNVSFDRNIMGAEYLRADLAD 120

Query: 117 PLDPSRIIDTLSIARRKH------PSSRNDLNSLCKRYGITISH--RSKHGALLDSHLLS 168
            L+   +IDT +    +          +  L +L + Y           H A  D    +
Sbjct: 121 VLEDKMVIDTCTEETAQLCQLTGGRGGKFKLPTLSELYHFLFQEGFEEAHNATADVEATT 180

Query: 169 DVYIKMMV 176
             +++++ 
Sbjct: 181 RAFLELLR 188


>gi|149195011|ref|ZP_01872104.1| DNA polymerase III, epsilon chain [Caminibacter mediatlanticus
           TB-2]
 gi|149134932|gb|EDM23415.1| DNA polymerase III, epsilon chain [Caminibacter mediatlanticus
           TB-2]
          Length = 274

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 10/175 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD ETT +      II    V     S   +     L P   K S EA ++H I  E L
Sbjct: 106 VFDTETTDI---YGYIISYAFVIQDMDSLETKEIYELLNPK-AKISEEAYEVHKIKQEDL 161

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDPSRIIDTLSI 129
           +DKP+F        D FN  +   + HN  FD G +  EL+R    P +    I DT+  
Sbjct: 162 EDKPTFEEKKEYILDLFNSVDM-IVGHNVFFDFGVLKRELERAKHFPNIIEVPIFDTMFY 220

Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           +          +  L      + +       H AL D  +   V+ +++  G ++
Sbjct: 221 SWDIVVLDKKKQPRLEEAVAFF-LGPQKAQYHNALEDVKMTLKVFNRLLEEGKKL 274


>gi|294811599|ref|ZP_06770242.1| Putative DNA polymerase III epsilon subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324198|gb|EFG05841.1| Putative DNA polymerase III epsilon subunit [Streptomyces
           clavuligerus ATCC 27064]
          Length = 287

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 60/167 (35%), Gaps = 15/167 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M          FD ETTG+D +NDRI+    V         R  +  + P G    P A 
Sbjct: 47  MTLWFDGPLAAFDTETTGVDVENDRIVAAAVVVQDMAGGRPRITRWLINP-GIPVPPGAT 105

Query: 61  KLHGITDEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           ++HG+TD+ ++       P    +               +  NA FD+  ++ EL+R   
Sbjct: 106 EVHGLTDDHVQRNGRWPAPVLEEVAKTVAGHCAA-GRPLVVMNAPFDLTILDRELRRHRA 164

Query: 116 DPLDPSRIID--------TLSIARRKHPSSRNDLNSLCKRYGITISH 154
            PL                L     ++   R  L  LC +Y + +  
Sbjct: 165 TPLSRYLEHTPLTVLDPRVLDKQLDRYRKGRRSLVDLCSQYEVVLDG 211


>gi|261369077|ref|ZP_05981960.1| putative DNA polymerase III, epsilon subunit [Subdoligranulum
           variabile DSM 15176]
 gi|282568762|gb|EFB74297.1| putative DNA polymerase III, epsilon subunit [Subdoligranulum
           variabile DSM 15176]
          Length = 318

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 71/173 (41%), Gaps = 17/173 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIETTGLD   D I+++  ++ +D  +       ++ P   ++ PEA +++ IT E 
Sbjct: 120 VSIDIETTGLDFNQDEILQVSILD-IDTGEVL--LDSYVKPYFTEDWPEARRVNHITKEM 176

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLS 128
           + + P    +          Q    + +N   FD GF+     R      D + + D  +
Sbjct: 177 VCNAPYIYELLPRLNQVL-AQVKTIVGYNFTGFDNGFLT----RYGASFNDETIVEDLSN 231

Query: 129 IARRKHP--SSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           I    +   S ++      +L++    +G      + H +L D    +  Y K
Sbjct: 232 IFAAIYGEFSPKHGDFKFKNLSTCADYFGYDWGEETAHNSLADCRATAFCYKK 284


>gi|108760097|ref|YP_630122.1| exonuclease [Myxococcus xanthus DK 1622]
 gi|108463977|gb|ABF89162.1| exonuclease [Myxococcus xanthus DK 1622]
          Length = 219

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 12/168 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNG-RKNSPEALKLHGITD 67
              D+ETTGLD+    ++E+  + +   S K    ++  + P       PEAL + G +D
Sbjct: 32  CFVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEARVKPTRLADAHPEALAVCGYSD 91

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126
           E  +D      + +               HN  FD GF+    +R     P      +DT
Sbjct: 92  EEWRDALPLQEVLATVTPLLA--GTLVAGHNTSFDWGFLVESYRRSELALPSVDYHRLDT 149

Query: 127 LSIARRKHPSSRN---DLNSLCKRYGITISHR-SKHGALLDSHLLSDV 170
            S+A     +       LN+L KR+G+   HR + H A+ D+    +V
Sbjct: 150 ASLAWPLLATGEVESLSLNALAKRFGL---HRPTPHRAMADARCALEV 194


>gi|262402358|ref|ZP_06078919.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
 gi|262351140|gb|EEZ00273.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
          Length = 233

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 18/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V         +  + +L    R    +++ +HGIT   
Sbjct: 45  VALDFETTGLNAQQDDILSIGLVPFNTQRIALKQARYWLVKPSRPLEEDSVVIHGITHTE 104

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS- 128
           LK       +FSE +D    +    +AH    +  F+     ++ ++ ++   IIDTL  
Sbjct: 105 LKHAQEPEVVFSELFDAL--RGKIVVAHFRHIEREFLRQTTLKLWEEAVE-FPIIDTLEI 161

Query: 129 -----------IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                        R    P     L     RYG+     S H AL D+   ++++  
Sbjct: 162 ELSVQNTQRSLWQRLLRSPIPSVRLGQSRLRYGLP--AYSPHQALTDAIATAELFQA 216


>gi|182439793|ref|YP_001827512.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780457|ref|ZP_08239722.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
           griseus XylebKG-1]
 gi|178468309|dbj|BAG22829.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326660790|gb|EGE45636.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
           griseus XylebKG-1]
          Length = 241

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 15/165 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+   +     FD ETTG+D + DRI+    V         R  +  + P G    P A 
Sbjct: 1   MMHWFEGPLAAFDTETTGVDVEQDRIVSAALVAQDTAGGRVRVTRWLVNP-GVPVPPGAT 59

Query: 61  KLHGITDEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           ++HG+TD+ L+       P    I     +         +  NA FD+  ++ EL+R   
Sbjct: 60  EVHGLTDDHLQRNGRWPAPVMDEIARALAESCAT-GRPLVVMNAPFDLTLLDRELKRHRA 118

Query: 116 DPLD------PSRIID--TLSIARRKHPSSRNDLNSLCKRYGITI 152
             L       P R++D   L     ++   R  L  LC  Y + +
Sbjct: 119 SSLARYLDGVPMRVVDPRVLDKHLDRYRKGRRTLTDLCASYEVVL 163


>gi|67077901|ref|YP_245521.1| DNA polymerase III fragment [Bacillus cereus E33L]
 gi|66970207|gb|AAY60183.1| possible exonuclease [Bacillus cereus E33L]
          Length = 287

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 17/171 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N+ + ++ D ETTGL  + D+IIEI  ++L      N      + P       EA  +HG
Sbjct: 127 NRDQFVILDTETTGLTLR-DQIIEICVIDLTGKILLN----SLVKPTI-NIPAEAASIHG 180

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT++ + D PS+  I+ E  +         + +NA+FD+G I +     N       +  
Sbjct: 181 ITNKMVHDAPSWIEIYKELCEV--TAGKTLLIYNAEFDLGMIESTCI-ANNVEFKNFKST 237

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + +      S R   L    +   +TI    KH A+ D   + ++  ++
Sbjct: 238 CIMKMYADYVDSKRWISLGDATE---LTI----KHRAVADCFAVLELLQQL 281


>gi|300856782|ref|YP_003781766.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii
           DSM 13528]
 gi|300436897|gb|ADK16664.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii
           DSM 13528]
          Length = 436

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 76/177 (42%), Gaps = 10/177 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   +  +   + I AV+    +K  +     + P     + + + ++GIT +
Sbjct: 5   FVAIDFETANNNFNSACSLGIAAVK---NNKICKKDYFLIHPPTLDFNKKNISINGITPK 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P F  I+++   +F++     IAHNA FD+  +   L   +   +     I ++ 
Sbjct: 62  DIENSPLFPDIWNDIHTYFDDN--IIIAHNAVFDMSVLKNCLLEYDIS-MPNFNYICSIP 118

Query: 129 IARRKHPSS--RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           I+ +          L    K +G+ + H   H +L D+   +++ I+ +    + N 
Sbjct: 119 ISTKLCGGKGIGKSLEDRAKYFGVDLGHH--HNSLDDAAACANLVIECIKRAHKKNL 173


>gi|150024446|ref|YP_001295272.1| DNA polymerase III, alpha and epsilon subunits [Flavobacterium
           psychrophilum JIP02/86]
 gi|149770987|emb|CAL42454.1| Probable DNA polymerase III, alpha and epsilon subunits
           [Flavobacterium psychrophilum JIP02/86]
          Length = 1508

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 79/233 (33%), Gaps = 25/233 (10%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL         D     R I+I      +           + P G     +
Sbjct: 2   YLIFDTETTGLPRSWSAPITDTNNWPRCIQIAWQLHDEMGNLIEHQDYLIKPEGFNIPYD 61

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           A ++HGI+ E  ++   S   +  +F +    +    +  N  FDV  +  E  R N   
Sbjct: 62  AERIHGISTELAIEQGVSLQEVLEQF-NIALSKTKFIVGQNVGFDVNIMGCEFYRANISS 120

Query: 118 LD-PSRIIDTLSI---ARRKHP---SSRNDLNSLCK----RYGITISHRSKHGALLDSHL 166
                 ++DT +    +  K P     R  L +L +     + I  S    H A  D   
Sbjct: 121 DMVKMPVLDTCTEVTASLLKLPGGRGGRFKLPTLTELHQYLFQIPFS--EAHNATADVEA 178

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +  +++++                F + ++K    I L+          + E
Sbjct: 179 TTRCFLELIKREVFTKEELDVEAHYFHEFQRKNQGEIQLIGLKHINLKEASAE 231


>gi|325676987|ref|ZP_08156658.1| DNA polymerase III subunit epsilon [Rhodococcus equi ATCC 33707]
 gi|325552149|gb|EGD21840.1| DNA polymerase III subunit epsilon [Rhodococcus equi ATCC 33707]
          Length = 228

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 80/177 (45%), Gaps = 12/177 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M          FD+ETTG D  + RI+    V +    + +R+    + P G +   +A 
Sbjct: 1   MTHWTTRPICAFDLETTGRDPLSARIVTGSVVTV--GGEGHRSRNWIVDP-GVEIPVDAA 57

Query: 61  KLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116
            +HGI+    +++   ++S + E      +  A     +A NA +D+  ++AE +R+   
Sbjct: 58  AVHGISTAQARERGQDYASGYREIRSALTDAWAAGHVVVAFNAAYDLTVLDAEGRRLGWP 117

Query: 117 PLD-PSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           PL     ++D   I R        +  L +LC+ YG+ ++  + H A  D+   +++
Sbjct: 118 PLSGYGLVVDPYVIDREMDRDRRGKRTLGALCEHYGVVLA--AAHEAESDALAAAEL 172


>gi|262190277|ref|ZP_06048547.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|262033843|gb|EEY52313.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
          Length = 233

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 18/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            + +L    +    E++  HGIT   
Sbjct: 45  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEEESIVFHGITHSE 104

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   +   +  E  +         + H    +  F+      I  + ++   ++DTL I
Sbjct: 105 LQHAQAPEQVLKELLEAL--HGKIVVVHFRHIERDFLRQISLNIWGEAIE-FPVLDTLEI 161

Query: 130 ARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R+               P     L     RY +     S H AL D+   ++++  
Sbjct: 162 ERQLLDKQRSLWQRITRRPLPSIRLGQSRMRYHLPPY--SPHHALTDAIATAELFQA 216


>gi|182435215|ref|YP_001822934.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326775853|ref|ZP_08235118.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
           griseus XylebKG-1]
 gi|178463731|dbj|BAG18251.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326656186|gb|EGE41032.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
           griseus XylebKG-1]
          Length = 236

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 17/175 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   + FD+ETTG D +NDRI+    V L             L P G     +A  
Sbjct: 1   MSWHRGTLVGFDLETTGTDVENDRIVTAALVRLDADGTVAEQRTWLLDP-GVAIPEQASA 59

Query: 62  LHGI-TDEFLKDK----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           +HGI TD   +       +   I     +         +  NA++D+  ++ E +R    
Sbjct: 60  IHGIGTDHARRHGARAVVAVEEIAHAVAEVLRS-GVPLVVMNARYDLSLLDRECRRHGLP 118

Query: 117 PLD------PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +D      PS +ID L I +   K+   +  L +LC  YG+ +     H A  D
Sbjct: 119 SVDERVGGEPSPVIDPLVIDKHVDKYRKGKRALQALCDHYGVALDG--AHEASAD 171


>gi|66968596|ref|YP_245473.1| putative transposase [Pseudomonas aeruginosa]
 gi|66862678|emb|CAI46979.1| putative transposase [Pseudomonas aeruginosa]
 gi|112553494|gb|ABI20463.1| transposase [uncultured bacterium]
          Length = 275

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 62/172 (36%), Gaps = 17/172 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D ETTGL   +  I EI  +++      +      + P  R    EA  +H ITD  
Sbjct: 87  IVLDTETTGL-GDDAEICEITILDVTGAPILD----TLVRPT-RPIPVEATAIHKITDAM 140

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +   PS+  +  ++      +    +A+N  FD   +    Q         +     L  
Sbjct: 141 VASAPSWPEVAEQYAAAVAGR--TVVAYNVAFDARLLRQTYQIHGITAPVLTTACAMLMY 198

Query: 130 ARR--KHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           A    ++  SR+      L       G+  +    H AL D+ +   V   +
Sbjct: 199 AEWHGEYDRSRDRWRWLKLIEAATDCGV--AEDGAHRALADARMTLGVLRYL 248


>gi|313892527|ref|ZP_07826115.1| exonuclease [Dialister microaerophilus UPII 345-E]
 gi|313119055|gb|EFR42259.1| exonuclease [Dialister microaerophilus UPII 345-E]
          Length = 195

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 10/162 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+    D ET            +G V   D SK    +   + P       E ++++GI 
Sbjct: 1   MKYTAIDFETA--FWGKGNACSLGIVIS-DGSKLTDEWYDLIRPVHLNFDEECIRVNGIH 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +KDKP F   + +     N   A   AHNA FD G +   + R     ++     DT
Sbjct: 58  PEDVKDKPEFPYYWDKISGLLNGTVA--FAHNAPFDFGVLANTIDRYELPDINFC-WGDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           + I+R        + LN++ +      +H   H AL D+   
Sbjct: 115 VEISRILWKKLPNHKLNTVAEFLNFEFNH---HQALDDARAC 153


>gi|59713121|ref|YP_205897.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114]
 gi|59481222|gb|AAW87009.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
          Length = 238

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 76/203 (37%), Gaps = 27/203 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
              + +  +  D ETTGLD+  + II IG V   L+     ++   F+          ++
Sbjct: 41  TPLSDIEFVALDFETTGLDANQNSIISIGLVPFTLERIFCRQSQHWFVKAQD-SLEENSV 99

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGIT   L+  P    I  +  D         + H  + +  F +A L+ +  + +  
Sbjct: 100 VIHGITHSDLQGAPDLRRILEQVLDALA--GKVVVVHYRRIERDFFDANLRSLIGEGI-V 156

Query: 121 SRIIDTLS--------------IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             ++DT+                  +        L +   RYG+       H AL D+  
Sbjct: 157 FPVVDTMQIEGDYQQEQAKGFINWLKGKRPESIRLANTRLRYGLP--SYPPHHALTDAIA 214

Query: 167 LSDVYIKMMVGGSQINFGFKTNE 189
            ++++       +Q+ + F  ++
Sbjct: 215 TAELF------QAQVRYHFSPHD 231


>gi|308535281|ref|YP_002138830.2| 3'-to-5' exonuclease [Geobacter bemidjiensis Bem]
 gi|308052626|gb|ACH39034.2| 3'-to-5' exonuclease, putative [Geobacter bemidjiensis Bem]
          Length = 312

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 22/181 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV------FLCPNGRKNSPEALKLH 63
           +  D ETTGLD K D++IE+G V      +T   F++      F  P G     E  ++ 
Sbjct: 55  LCLDTETTGLDYKRDKVIELGIVAFEYDPETGEIFRISERYSGFEDP-GFPIPEEVKEIT 113

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+D+ ++ + +F      F +   E++   IAHNA FD  F+ A               
Sbjct: 114 GISDDMVRGQ-AFDDA---FINLLAEKSHMVIAHNAAFDRKFVEARF-----PAFTKLPW 164

Query: 124 IDTLSI-ARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSH-LLSDVYIKMMVGGSQ 180
             T+S         S   L  L  K   +TI   + H AL D+  +L  +  ++ V G+ 
Sbjct: 165 ACTVSQIDWGAERVSSRTLEYLLFKTASLTI---NAHRALDDAEGVLGLLLERLPVTGAP 221

Query: 181 I 181
           I
Sbjct: 222 I 222


>gi|56460284|ref|YP_155565.1| 3'-5' exonuclease [Idiomarina loihiensis L2TR]
 gi|56179294|gb|AAV82016.1| 3'-5' exonuclease [Idiomarina loihiensis L2TR]
          Length = 215

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 14/179 (7%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKL 62
              +R +  DIE+TGLD K  +I+ I  + +          Q  +  +G++    ++  +
Sbjct: 22  WQSLRYVALDIESTGLDPKKHQILSIAWMSIHPPVMHLGNAQYHVFAHGQELELGQSPTI 81

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+T +           F+      N  +A  + H+   D  F+     +    P  P  
Sbjct: 82  HGLTRQDFLHSSEPKQTFAMLSRALN--DAVLVCHHKGMDWRFLKHIEAQYGI-PFKPLA 138

Query: 123 IIDTLSIARRKHPSSRND--------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           I DTL+  + K   + +         L++  KRY +   H   H AL D+   +++++ 
Sbjct: 139 IFDTLAFEKHKLERNPHQPIYGGQLALSACRKRYNLPDYH--AHHALTDTVACAELFLA 195


>gi|116671124|ref|YP_832057.1| exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24]
 gi|116611233|gb|ABK03957.1| Exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24]
          Length = 337

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 61/168 (36%), Gaps = 10/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLHGIT 66
               D ET   +        +G  ++             + P     +     +++HGI 
Sbjct: 5   FTAIDFETA--NGFRGSPCAVGLSKVR-GGVVVEEASWLMRPPEDHDRFDYHNVRIHGIR 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +   P F  +F E   F         AHNA FD+G I + L+     P      + T
Sbjct: 62  PEDVAGLPRFGELFPEIGAFIG--GDVLAAHNAAFDLGVIRSALEVSGL-PGPAYDYVCT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + ++RR +    N L    +  G+ + +   H A  D+   + + I +
Sbjct: 119 VMLSRRCYSLVSNSLPYAAEEAGVPLVNH--HDAAEDARACAGILIDI 164


>gi|89890044|ref|ZP_01201555.1| DNA polymerase III [Flavobacteria bacterium BBFL7]
 gi|89518317|gb|EAS20973.1| DNA  polymerase III [Flavobacteria bacterium BBFL7]
          Length = 1450

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 84/232 (36%), Gaps = 23/232 (9%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R+I+I      +           + P+G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPYTDVDNWPRVIQIAWQLHDEMGNLIEHKDYLVKPDGFDIPYD 61

Query: 59  ALKLHGITDEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK- 115
           A ++HGI+   L D+       + SEF +    +    +  N KFD+    AE +R    
Sbjct: 62  AERIHGISTA-LADQQGVPLEEMLSEF-NIALSKAKFVVGQNLKFDLNVTGAEFERTQIA 119

Query: 116 DPLDPSRIIDTLSIARRKH------PSSRNDLNSLCKRYGITISH--RSKHGALLDSHLL 167
           + L    ++DT +    +          +  L +L + +    +      H A  D    
Sbjct: 120 NDLQEIPVLDTCTEHTAQLCQIPGGRGGKFKLPTLTELHQFLFNQPFGEAHNATADVEAT 179

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           +  +++++             +D F + +++    I  +        + + +
Sbjct: 180 TRCFLELIRKQQYSKQQLDVADDYFVRFQQQNPAPIRPVGITHINLKKASDQ 231


>gi|332669588|ref|YP_004452596.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC
           484]
 gi|332338626|gb|AEE45209.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC
           484]
          Length = 239

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 87/225 (38%), Gaps = 19/225 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N    + FD ETTGLD   DRI+    V         RT+   L P G +    A  
Sbjct: 1   MGWNDGPLLGFDTETTGLDVDRDRIVTAALVRRDAAGTHVRTW--LLDP-GVEIPEAAAS 57

Query: 62  LHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           +HG++ E      +  K +   I +E    F       +A+NA FD+  ++AEL+R    
Sbjct: 58  IHGVSTEHAKAHGVAPKAALDEIATELAGAFRA-GVPVVAYNAAFDLCLLDAELRRHRLP 116

Query: 117 PLDP------SRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            L          +ID L + R   +    +  L  LC  Y + +     H A +D     
Sbjct: 117 TLPDRLLGAARPVIDPLVLDRAVDREREGKRKLVDLCGVYEV-VESGDLHNADVDVVATL 175

Query: 169 DVYIKMMVGGSQI-NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
           DV  +++     + +    T  +      +    + +  + +K L
Sbjct: 176 DVLERIVGRFPHLADLDLDTLHEYQVTAHRAWAESFNAWRTEKGL 220


>gi|269218897|ref|ZP_06162751.1| putative DNA polymerase III epsilon subunit [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269212008|gb|EEZ78348.1| putative DNA polymerase III epsilon subunit [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 240

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 87/251 (34%), Gaps = 47/251 (18%)

Query: 1   MIRKNKM----RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           M  +N M      I FD ETTG+D K DR++    V + +   + R    +L   G +  
Sbjct: 1   MDEENAMWTSSPVIGFDTETTGIDPKRDRLVTCSLVAVTEEGVSKR---YWLADPGVEIP 57

Query: 57  PEALKLHGITDEFLK-DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQR 112
             A  +HGIT E  + +      +  E      E   +    +A NA +D   + +EL R
Sbjct: 58  ERAGAVHGITTERARAEGRPSKEVLEEVAALLAEHMGRGHPAVAFNATYDFTLLESELDR 117

Query: 113 INKDPL------DPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
                L      +   ++D   L  +  ++   +  L  LC+ YG+  +    H A  D 
Sbjct: 118 HGLPTLAERLGGEVFPVVDPYLLDRSADRYRKGKRRLEDLCRHYGVH-AEDDFHNAEADV 176

Query: 165 HLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
                +   ++    ++                            +     I + E + H
Sbjct: 177 LATLRLLAAIVRKFPELA---------------------------RAELEAIQERECETH 209

Query: 225 DKTIQTLGKNA 235
              +  L + A
Sbjct: 210 ADFMAFLARKA 220


>gi|269961702|ref|ZP_06176063.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833567|gb|EEZ87665.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 239

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 78/204 (38%), Gaps = 29/204 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
              +++  +  D ETTGL+ + + II IG V   L+     +     + P   K   E++
Sbjct: 42  TPLSQVEFVALDFETTGLNPQKNGIITIGLVPFNLNRIFLRQAKHWKVRPQ-EKLDEESV 100

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLD 119
            +HGIT   L D P    I     +         + H  + +  F+   L+ RI +    
Sbjct: 101 IIHGITHSELIDAPDLGEILGPLLESLA--GKIVVVHYRRIEREFLAQALRTRIGEGIEF 158

Query: 120 PSRIIDTLS-------------IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSH 165
           P  ++DTL                + K    ++  L    +RYG+     + H AL D+ 
Sbjct: 159 P--VLDTLQIEEDIQQRTSGGLWNKLKGNKPKSLRLAQSRRRYGLP--DYTPHHALTDAI 214

Query: 166 LLSDVYIKMMVGGSQINFGFKTNE 189
             +++        +QI   +   +
Sbjct: 215 ATAELL------QAQIAHHYSEEQ 232


>gi|317503610|ref|ZP_07961630.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
 gi|315665271|gb|EFV04918.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
          Length = 284

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 15/171 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             K    V DIET  +  +      +G V + +     + F   + P     +     +H
Sbjct: 1   MEKHTFTVIDIET--MTPERTSACALGLVRVEND-VIVQKFYSLIKPIPDDRTVTNTHVH 57

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E +++ P+F  ++     + + Q     AHN  FD+  +           +  + +
Sbjct: 58  GITPEMVENAPTFQDLWPTIEHYISGQ--VLAAHNTSFDLDVLKKVSTHYGI-TIPITGV 114

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +DT          +   L+  CK   + +     H AL D+   +++ + +
Sbjct: 115 VDT-------FSLTHLSLDETCKVLHVDL--GKHHDALCDATACAEIILVL 156


>gi|51244817|ref|YP_064701.1| DNA polymerase III subunit epsilon [Desulfotalea psychrophila
           LSv54]
 gi|50875854|emb|CAG35694.1| probable DNA polymerase III, epsilon chain [Desulfotalea
           psychrophila LSv54]
          Length = 239

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 72/190 (37%), Gaps = 21/190 (11%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
                +  +  D ETTGLD + D I+ IG +    +    +    ++         +++ 
Sbjct: 42  TPLQDIPFVALDFETTGLDLQKDGILSIGLIPFDTHRIYCKKAAYWVINPHSPLGEDSVI 101

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGIT   + + P    ++ E  +         + H  + +  F++  L  +  + +   
Sbjct: 102 IHGITHSDINNAPGLGKVWQEVLNELA--GKIVVVHYREIERKFLDKALHELLGEGIA-F 158

Query: 122 RIIDTLS---------------IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            +IDT+                  + +HP S   L +   RYG+   H   H AL D+  
Sbjct: 159 PVIDTMQIESIIQQKKRGGLWNWLKGRHPES-IRLANSRSRYGLP--HYQVHHALTDAIA 215

Query: 167 LSDVYIKMMV 176
            +++    + 
Sbjct: 216 TAELLQAQIA 225


>gi|309779749|ref|ZP_07674506.1| DNA polymerase III [Ralstonia sp. 5_7_47FAA]
 gi|308921488|gb|EFP67128.1| DNA polymerase III [Ralstonia sp. 5_7_47FAA]
          Length = 216

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 71/183 (38%), Gaps = 17/183 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL+ + D I+ IGAV ++     T+   ++ + P G +  PE++ +H + +
Sbjct: 38  WVALDCETTGLNVRTDEIVSIGAVRIVGNRILTSEPLELLIRPQG-EMRPESICVHRLRN 96

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRIIDT 126
             L    S          F   +    + +  +FDV  +N   +  +      P   +  
Sbjct: 97  RDLDSGVSIEQAIHALLHFIGSR--PLVGYYLEFDVAMLNRVVVPMLGIGLPQPKIEVSA 154

Query: 127 LSIARRKHPSSRND------LN----SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           L    +              L+    ++ K   +       H AL D+ + +  ++K+  
Sbjct: 155 LYYDYQFEQLPPYRQQGDPDLDLRFATVMKELDLPTWD--AHDALNDAVMAALAFVKLRQ 212

Query: 177 GGS 179
            G+
Sbjct: 213 LGA 215


>gi|41057226|ref|NP_958252.1| hypothetical protein VWBp10 [Streptomyces phage VWB]
 gi|39656049|gb|AAR29700.1| hypothetical protein [Streptomyces phage VWB]
          Length = 263

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 21/186 (11%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +K R + FD+ETTG+D + DRI+   A++L        T +    P G +    A  +
Sbjct: 1   MWHKARMVAFDLETTGVDVEQDRIVTAAAIDLGAEKPL--TLEWLADP-GIEIPEGATAV 57

Query: 63  HGITDEFLKD-KPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           HGIT E  ++       +  +  +            + HN  +D+  ++ E +R     L
Sbjct: 58  HGITTEHAREHGERAHDVVDQVAETLALRVRDGVPVVGHNVPYDLTLLDRECRRYELPLL 117

Query: 119 ------DPSRIIDTLSIARRKHPSSRND--------LNSLCKRYGITISHRSKHGALLDS 164
                  P  +IDT  + +   P  +          L +L + Y +     + HG   D+
Sbjct: 118 QDRLDGTPLHVIDTRVLDQHCLPYRKRVSETQGARQLITLAQVYSLPWDAEAAHGCSYDA 177

Query: 165 HLLSDV 170
            + + +
Sbjct: 178 LMAARI 183


>gi|218288682|ref|ZP_03492945.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241040|gb|EED08216.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 218

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 74/187 (39%), Gaps = 10/187 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLC-PNGRKNSPEALKLHGIT 66
             V D+ET+G     D+I+ +       + S+ + +F   +   +         +L G++
Sbjct: 30  YFVLDLETSGFSPARDKILSVACATFSGWSSEPDESFYAVVRHDDVADVPSHIWELTGLS 89

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D     +      +        W+AH+ + D+ F+      + +  L P   IDT
Sbjct: 90  PQAVLDGEPLDAALRRALEL--GAGRVWVAHHVRHDLSFLQRVSDALWRLRLRP-LAIDT 146

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
             + +    + R   L+  CK  G+ +  R  H A  D  + + V+ K M     +  G 
Sbjct: 147 AVVGQALARAPRPLTLDEACKWLGVPVIGR--HQADADVRMTAAVWRKEMELC--MRLGL 202

Query: 186 KTNEDRF 192
           +T +D  
Sbjct: 203 QTVKDVI 209


>gi|325068103|ref|ZP_08126776.1| Exonuclease RNase T and DNA polymerase III [Actinomyces oris K20]
          Length = 260

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 85/229 (37%), Gaps = 28/229 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVE---LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           FD ETTG+D   DR++    V            ++   +L   G +    A  +HG+T E
Sbjct: 28  FDTETTGVDPSGDRLVTAALVWRATPRADGVRPQSVATWLADPGVEIPEAAAAVHGVTTE 87

Query: 69  FLK-DKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDP------- 117
             + +    + + +E  +   E  A     +A NA +D+  + AEL R            
Sbjct: 88  RARAEGRPVTEVLAEVSEHLVEAMAAGTPVVAFNASYDLTLMEAELARHGLPTMRSRLGR 147

Query: 118 -LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            L P      L  A  ++   +  L  LC+ YG+ +   + H A +D     DV   +  
Sbjct: 148 ELGPIADPLVLDRAVDRYRRGKRRLGDLCEVYGVHVD-EALHTAEVDVAATLDVLEALAA 206

Query: 177 GGSQIN-------FGFKTNEDRFFKEE-----KKTVPNISLLKRDKPLF 213
              +++         F+    R + E       +  P+ +  +   PL 
Sbjct: 207 AHPKLSEVSPDELVAFQARAHRTWAESFNEWLARKNPSRTPAQTAWPLP 255


>gi|289424061|ref|ZP_06425847.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
 gi|289155486|gb|EFD04165.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
          Length = 480

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 70/187 (37%), Gaps = 29/187 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-------------- 54
            + FD+E TG +SK + +IEI A +++D+   +  +   + P   +              
Sbjct: 22  YVSFDLEATG-NSKFNYMIEISAFKVIDFEVVDE-YSSLIRPPRSRKVTKSSRLLSECEE 79

Query: 55  -------NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
                         L GI +  +      + +  +F DF    ++  + H    D+  + 
Sbjct: 80  FGDKIYYIDKFIESLTGIDNISIHKAEKEADVIKKFRDFVG--DSILVGHGVNNDINLLK 137

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
               R+  +    ++ IDT ++           L +LC +Y I       H A  D++  
Sbjct: 138 DTYMRVFGEEF-TNKYIDTQALG-VFLDDREYSLVNLCNKYSIENID--THRASSDAYRT 193

Query: 168 SDVYIKM 174
           +  YI +
Sbjct: 194 NLCYINL 200


>gi|149912277|ref|ZP_01900850.1| exonuclase [Moritella sp. PE36]
 gi|149804647|gb|EDM64704.1| exonuclase [Moritella sp. PE36]
          Length = 234

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 14/173 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL++K D I+ IG VEL        +    +     +   + + +H ITD+
Sbjct: 46  ILAVDFETTGLNAKQDNILSIGYVELAGSKIRLDSCYHQIVAAHCELVGDNVTIHNITDK 105

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127
                   +S+  +            + H A+ +  F+  A ++     P+ P  +IDTL
Sbjct: 106 EKASGRPLASVVEDLLAALA--GKTMLVHYAQIEKTFLEQACIKLYGMAPIFP--VIDTL 161

Query: 128 SIARRKHPSS-------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++A+++H          R  L++L + YG+     S H AL D+   +++++ 
Sbjct: 162 ALAKKRHDRGNQAYAPSRLHLSNLREEYGLP--RYSAHNALNDAIATAELFMA 212


>gi|297191229|ref|ZP_06908627.1| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297150828|gb|EDY62400.2| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 259

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 15/164 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   + FD+ETTG D  + RI+    VEL            ++   G     +A  
Sbjct: 20  MSWHRELLVGFDLETTGTDPLDARIVTAAVVELRAGEPV--RSHGWMADPGISIPAQASA 77

Query: 62  LHGITDEFL-KDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKD- 116
           +HGI++E    +      +  E  D       Q    +A+NA FD+  + AELQR     
Sbjct: 78  IHGISNERASAEGRPAREVAEEIADTLTAHWRQGVPVVAYNAAFDLTLLAAELQRHGLPS 137

Query: 117 --------PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
                   P+ P     T+  A  ++   +  L ++C  YG+ +
Sbjct: 138 LGERLDGRPIGPVIDPYTIDRAVDRYRKGKRTLEAVCVEYGVLL 181


>gi|170727178|ref|YP_001761204.1| exonuclease RNase T and DNA polymerase III [Shewanella woodyi ATCC
           51908]
 gi|169812525|gb|ACA87109.1| Exonuclease RNase T and DNA polymerase III [Shewanella woodyi ATCC
           51908]
          Length = 226

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 15/183 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64
           +   +  D+E TGLD++ D+I+ IG V +       ++     +   G  +  ++  +HG
Sbjct: 40  RAPLLAIDLEMTGLDAQFDQILSIGIVPIEKGRLILSKAEHKLVKIEG--SVGQSATIHG 97

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I D  L    S     + F +    Q    +AH++  D+ F+   L    +  +     I
Sbjct: 98  ILDHHLNSAVSPEEAMTWFLE--RCQGQMLVAHHSPLDLAFLQKGLSTHFRQRVTLMA-I 154

Query: 125 DTLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           DTL+I +R+              L +   RYG+ +   + H AL+D+    ++ +  +  
Sbjct: 155 DTLAIEKRRLMRQHEVLKEGALRLGASRARYGLPVY--AAHNALIDAIACGELLLAQISA 212

Query: 178 GSQ 180
             Q
Sbjct: 213 IGQ 215


>gi|254506426|ref|ZP_05118568.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 16]
 gi|219550600|gb|EED27583.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 16]
          Length = 210

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 72/180 (40%), Gaps = 11/180 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKL 62
             K   +  D ETT LD     ++ I A +++D      R F+V L    +     ++K+
Sbjct: 25  LQKGEYVSLDCETTSLDPNRAELVTIAATKIIDNRIITSRPFEVRLR-APQSLDSSSVKI 83

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H +  + L D         +  +F   +    + ++ ++D   ++   +R    PL    
Sbjct: 84  HQMRHQDLVDGLDEKQALIKLLEFVGNR--PLVGYHIRYDKKILDLACRRHLGFPLPNPL 141

Query: 123 IIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           I  +     +      N      L+++CK   + I  +  H AL D+   + V++++  G
Sbjct: 142 IEVSQIYHDKLERHLPNAYFDLSLDAICKHLDLPIQDK--HDALQDAISAALVFVRLTKG 199


>gi|254386752|ref|ZP_05002044.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
 gi|194345589|gb|EDX26555.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
          Length = 246

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 15/165 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +    + FD+ETTG +    RI+    VE+       R    +L   G     +A 
Sbjct: 1   MAAWHGGALVGFDLETTGTEPGESRIVTAAVVEVRGGEVRERRG--WLADPGIPIPEQAS 58

Query: 61  KLHGITDE-FLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKD 116
            +HGI+    + +      +  E      E   + A  +A+NA FD+  ++AEL R    
Sbjct: 59  AIHGISTARAVAEGRPVREVAQEVAAALVEHWRRGAVVVAYNAAFDLTLLSAELARHGLP 118

Query: 117 PL-------DPSRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITI 152
            L           ++D L+I R   ++   +  L ++C  YG+T+
Sbjct: 119 SLSDRLGGAPTGPVVDPLTIDRAVDRYRRGKRTLEAVCGVYGVTL 163


>gi|224372066|ref|YP_002606231.1| predicted type III DNA polymerase PolC [Desulfobacterium
           autotrophicum HRM2]
 gi|223694785|gb|ACN18067.1| predicted type III DNA polymerase PolC [Desulfobacterium
           autotrophicum HRM2]
          Length = 290

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 14/202 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D+ET   +     I +IG +   +  +  R +   + P      P  + +HGI 
Sbjct: 1   MEFVSIDVETA--NPDMASICQIG-IACFNNGQLEREWSSLVNPRDY-FDPINVSVHGIN 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +   PSF  I+ E     + +    ++H   FD   ++  +++ + DP+D    +D+
Sbjct: 57  ETSVSSAPSFEEIYHEIRSLLSGKIC--VSH-THFDRISMDKAIRKHSLDPIDVV-WLDS 112

Query: 127 LSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             IARR           L ++CK  G    H   H AL D+     +    +        
Sbjct: 113 ARIARRAWEECAWKGYGLANVCKIIGFEFKH---HDALEDAKACGAIVHAAVEKAGLTLE 169

Query: 184 GFKTNEDRFFKEEKKTVPNISL 205
           G+ T   +       +   ++L
Sbjct: 170 GWLTRVGQPISGLSSSGGKVAL 191


>gi|254226650|ref|ZP_04920229.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V51]
 gi|125620819|gb|EAZ49174.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V51]
          Length = 236

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 18/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            + +L    +    E++  HGIT   
Sbjct: 48  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEEESIVFHGITHSE 107

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   +   +  E  +         + H    +  F+      I  + ++   ++DTL I
Sbjct: 108 LQHAQAPEQVLKELLEAL--HGKIVVVHFRHIERDFLRQISLNIWGEAIE-FPVLDTLEI 164

Query: 130 ARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R+               P     L     RY +     S H AL D+   ++++  
Sbjct: 165 ERQLLDKQRSLWQRITRQPLPSIRLGQSRMRYHLPPY--SPHHALTDAIATAELFQA 219


>gi|327440671|dbj|BAK17036.1| DNA polymerase III, epsilon subunit [Solibacillus silvestris
           StLB046]
          Length = 353

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 24/229 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITD 67
            I  DIE   L      IIEIGAV+ L    T  TF   + P   +K +    KL GIT 
Sbjct: 7   YISIDIEAA-LIRGKQYIIEIGAVKWLPDG-TTETFTQLIQPYKFKKLNAHIQKLTGITT 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID-- 125
           E L D PSF   F++F  +  +          +FD   +  EL R          +ID  
Sbjct: 65  EQLVDAPSFKEAFTKFKRWCKQDYVFLTF--GEFDRKVLEEELSRNYIKNDCLYPMIDFQ 122

Query: 126 ---TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
               ++   ++ P     L  L  + G  + + ++H AL D+  L  +++K+        
Sbjct: 123 QKYMIANGLKEQP----SLGGLMAQLG--LENETQHRALADAASLLSIFVKV-------- 168

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231
            G K  E +   +    + N  +L+    L    T  +++++  TIQ++
Sbjct: 169 DGDKIIEQQQTNDFILLLTNFKMLETTYELVISATNCKIEDNGITIQSM 217


>gi|290891242|ref|ZP_06554304.1| hypothetical protein AWRIB429_1694 [Oenococcus oeni AWRIB429]
 gi|290479206|gb|EFD87868.1| hypothetical protein AWRIB429_1694 [Oenococcus oeni AWRIB429]
          Length = 177

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 72/167 (43%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   +  +   + +G   + D  +  + +   + P     S    +++G+T
Sbjct: 1   MNFLAMDFETASSEPWSA--VSLGLTIVRDN-QIAQNWYSLIKPET-SFSYWNTEINGLT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P F  ++++  + +++     + HN +FD   +   L+            +DT
Sbjct: 57  ADDVLDSPKFPEVWADIKNLYDDYP-VVVGHNVRFDNNVLKQTLKYYGLKT-PRYLSLDT 114

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +S++R+  P    + L+++    G+ + H   H A  D+   + + I
Sbjct: 115 VSLSRKFQPGMVNHKLDTVVSDLGLFLEHH--HNASDDAQASAQILI 159


>gi|258646762|ref|ZP_05734231.1| exonuclease [Dialister invisus DSM 15470]
 gi|260404188|gb|EEW97735.1| exonuclease [Dialister invisus DSM 15470]
          Length = 207

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 71/171 (41%), Gaps = 10/171 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+    D ET      +   + I      D ++    +   + P      P  ++++GI 
Sbjct: 1   MKYAAIDFETAYWGPGSACSLGISVS---DGNEITEEWYRLIRPYRMNFDPICMRVNGIY 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + ++ +P+F + + E  +    + +   AHNA+FD+G + + L   +  P       DT
Sbjct: 58  PDDVEKEPAFPAFWKEVAERL--EGSIVFAHNARFDMGVLASVLDVYDL-PDIHFLYGDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++++R        + L+++    G   +H   H AL D+     +  K + 
Sbjct: 115 VAVSRMLWKELPNHKLDTVAGSLGYDFNH---HQALDDARACEMIVRKAVE 162


>gi|327194132|gb|EGE61003.1| putative polymerase protein, epsilon subunit [Rhizobium etli
           CNPAF512]
          Length = 326

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 64/169 (37%), Gaps = 21/169 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+ ++D IIEIGAV     D         ++  L    R   PE  +L GI
Sbjct: 75  VVLDTETTGLNHRSDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIPPEVTRLTGI 134

Query: 66  TDEFLKDKPSFSSIFS--EFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR 122
           TD  ++       +             +   IAHNA FD  F  A       K       
Sbjct: 135 TDAMVEG-----QVIDIRSLSALIEPADL-IIAHNAGFDRPFCEAFSSLFTGKAWACSVA 188

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            ID    + R    ++  L  L  + G        H A+ D H L ++ 
Sbjct: 189 EID---WSARGFEGTK--LGYLVGQAG---YFHEGHRAVDDCHALLEIL 229


>gi|229529628|ref|ZP_04419018.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229333402|gb|EEN98888.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
          Length = 236

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 18/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            + +L    +    E++  HGIT   
Sbjct: 48  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEEESIVFHGITHSE 107

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   +   +  E  +         + H    +  F+      I  + ++   ++DTL I
Sbjct: 108 LQHAQAPEQVLKELLEAL--HGKIVVVHFRHIEREFLRQISLNIWGEAIE-FPVLDTLEI 164

Query: 130 ARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R+               P     L     RY +     S H AL D+   ++++  
Sbjct: 165 ERQLLDKQRSLWQRITRQPLPSIRLGQSRMRYHLPPY--SPHHALTDAIATAELFQA 219


>gi|170024544|ref|YP_001721049.1| exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis YPIII]
 gi|186895217|ref|YP_001872329.1| exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis PB1/+]
 gi|169751078|gb|ACA68596.1| Exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis YPIII]
 gi|186698243|gb|ACC88872.1| Exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis PB1/+]
          Length = 217

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 22/184 (11%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R  K   ++ D ETTGL   +  IIEI  ++       +      + P  +    EA  +
Sbjct: 39  RWLKRNYLILDTETTGL-GNDAEIIEISIIDCTGKILLD----TLVKP-IKAIPAEATAI 92

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGIT++ + D P++  I  +F       +   + +NA FD   I       N  P+   +
Sbjct: 93  HGITNDIVADAPTWRDIHWQFM--VLTNDRTLLIYNASFDSRLIFQTAA-ANNCPVPEKK 149

Query: 123 II----DTLSIARRKH---PSSRND-----LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            I      +    + +      RN      L++  ++ G+ I   + H AL D      +
Sbjct: 150 YIFDAECVMESYAKYYGQWDQKRNKFKWQRLSNAAEQQGVAIDG-TPHRALADCKTTLGI 208

Query: 171 YIKM 174
              M
Sbjct: 209 IRAM 212


>gi|229525881|ref|ZP_04415286.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|229339462|gb|EEO04479.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
          Length = 236

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 18/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            + +L    +    E++  HGIT   
Sbjct: 48  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEDESIVFHGITHSD 107

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   +   +  E  +         + H    +  F+      I  + ++   ++DTL I
Sbjct: 108 LQHAQAPEQVLKELLEAL--HGKIVVVHFRHIERDFLRQISLNIWGEAIE-FPVLDTLEI 164

Query: 130 ARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R+               P     L     RY +     S H AL D+   ++++  
Sbjct: 165 ERQLLDKQRSLWQRIARRPLPSIRLGQSRMRYHLPPY--SPHHALTDAIATAELFQA 219


>gi|116514157|ref|YP_813063.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093472|gb|ABJ58625.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 261

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 26/174 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+ETTG      +II+IGA+++ D  +T   F  ++ P   K +     L GI++ 
Sbjct: 8   YTVFDLETTG-----KKIIQIGALKVRDD-QTVAKFSTYVNP-LEKINDYVSHLTGISNY 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
                P    +  +F DF  +     + HN   FD   +       N  P+  +  +DTL
Sbjct: 61  QTDAAPLIDEVMPDFLDFVGDD--TLVGHNILSFDCNVLAD-----NGYPVA-NPKLDTL 112

Query: 128 SIA-----RRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +A     R     P     L+++ + YGI I   + H A+ D    + VY K+
Sbjct: 113 LLANSYKKRGLFADPIPNVRLSTMKEYYGINI---NSHIAISDCITNNIVYQKL 163


>gi|21684666|gb|AAM09078.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps]
          Length = 175

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 5/123 (4%)

Query: 36  DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI 95
               T   F  ++ P  ++ +  A  +HG+ DEFL  +P+F +I      F     A  +
Sbjct: 3   GGRITGNYFHSYINP-CQRMTRGAQAVHGLRDEFLATQPTFGAIAQRLLYFL--CGAVLV 59

Query: 96  AHNAKFDVGFINAELQRINKDPL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS 153
            HN  FD+ F++A L      P     + +IDT+    ++    R  L+ LC R G+   
Sbjct: 60  GHNLTFDLNFLDAGLVSAGFMPAARYCAGVIDTMLHLAQRGSRRRFSLDDLCDRLGVRRG 119

Query: 154 HRS 156
            R+
Sbjct: 120 DRA 122


>gi|304393986|ref|ZP_07375910.1| exodeoxyribonuclease 10 [Ahrensia sp. R2A130]
 gi|303293961|gb|EFL88337.1| exodeoxyribonuclease 10 [Ahrensia sp. R2A130]
          Length = 230

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 74/223 (33%), Gaps = 34/223 (15%)

Query: 11  VFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           V D ETTG    +  ++EI      V    +++   T    L P       EA+ +H IT
Sbjct: 9   VIDTETTGFLP-DASMVEIAWTDLLVGDDGFAEIGETISHLLKPK-HPIGLEAMAVHHIT 66

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + D P    +  +             AHNA FD GF                  I T
Sbjct: 67  EAMVADAPMLGQLDPQ--PSIGSD--YLAAHNADFDKGF-----------YPVDREWICT 111

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITIS---HRS--KHGALLDSHLLSDVYIKMMVGGSQ 180
           L  +RR       +    L     +       R+   H A  DS++ + +  +M+     
Sbjct: 112 LKCSRRLWEDAPSHKNGVLRYWLNLDADMDYDRTLPAHRAGPDSYVTAYLLERMLR---- 167

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
                   +   +  E   +P ++  K     F  +  + L+ 
Sbjct: 168 ---EVSLEQLVQWSREPSMLPRVNFGKHRGMKFADVPSDYLEW 207


>gi|91227218|ref|ZP_01261677.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|91188746|gb|EAS75034.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
          Length = 239

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 21/190 (11%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              +++  +  D ETTGL+ +   II IG V         R  + +     R    +++ 
Sbjct: 42  TPLSEVEFVALDFETTGLNPEKHDIITIGLVPFNLKRIFLRNSRHWKVRPQRALDEDSVI 101

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDP 120
           +HGIT   L D P    I SE     + +    + H  + +  F++  L+ R+ +    P
Sbjct: 102 IHGITHSELIDAPDLGDILSELLPCLSGK--IIVVHYRRIEREFLDKALKSRLGEGIEFP 159

Query: 121 SRIIDTLS-------------IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHL 166
             ++DTL                R K     +  L    +RYG+     + H AL D+  
Sbjct: 160 --VLDTLHLEETIQQKRSGSLWERLKGKKPESVRLAQSRRRYGLP--DYTPHHALTDAIA 215

Query: 167 LSDVYIKMMV 176
            +++    + 
Sbjct: 216 TAELLQAQIA 225


>gi|254453711|ref|ZP_05067148.1| exonuclease [Octadecabacter antarcticus 238]
 gi|198268117|gb|EDY92387.1| exonuclease [Octadecabacter antarcticus 238]
          Length = 205

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 76/172 (44%), Gaps = 15/172 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
             R I  D+ET G       I +IG   + +     +T+ V + P      P   +LHGI
Sbjct: 17  PFRFIALDVETAGKTIAG--ICQIGLCFVSNTGAV-QTYSVLIEPE-EPFEPFNTELHGI 72

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + ++   +F  +++  +D  N  +   + H + FD   + +   R    P+  S   +
Sbjct: 73  SADTVEGAGTFPEVYAALFDLLNTHS--LVQH-STFDEKALTSACARYGL-PMITSHWTN 128

Query: 126 TLSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++++AR+  P+ +    + L +L K  G+   H   H A  D+   + V ++
Sbjct: 129 SVTVARQAWPALKGAGGHGLANLKKHLGLEFHH---HDAGEDARASATVILR 177


>gi|241666520|ref|YP_002984604.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240861977|gb|ACS59642.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 326

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 66/167 (39%), Gaps = 17/167 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+ ++D IIEIGAV     D         ++  L    R   PE  +L GI
Sbjct: 75  VILDTETTGLNHRSDEIIEIGAVAFTFNDDGAIGDIVGIYGGLQQPSRPIPPEITRLTGI 134

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRII 124
           TD  ++ +     I           +   IAHNA FD  F  A  +    K        I
Sbjct: 135 TDAMVEGQ--LIDI-QSLRTLIEPADL-IIAHNAGFDRPFCEAFSKIFTGKAWACSVSEI 190

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           D    + R    ++  L  L  + G        H A+ D H L ++ 
Sbjct: 191 D---WSARGFEGTK--LGYLVGQAG---YFHEGHRAVDDCHALLEIL 229


>gi|229521403|ref|ZP_04410822.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229341501|gb|EEO06504.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
          Length = 233

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 18/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            + +L    +    E++  HGIT   
Sbjct: 45  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQARYWLVKPSQPLEDESIVFHGITHSE 104

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   +   +  E  +         + H    +  F+      I  + ++   ++DTL I
Sbjct: 105 LQHAQAPEQVLKELLEAL--HGKIVVVHFRHIERDFLRQISLNIWGEAIE-FPVLDTLEI 161

Query: 130 ARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R+               P     L     RY +     S H AL D+   ++++  
Sbjct: 162 ERQLLDKQRSLWQRITRRPLPSIRLGQSRMRYHLPPY--SPHHALTDAIATAELFQA 216


>gi|260768304|ref|ZP_05877238.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260616334|gb|EEX41519.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
          Length = 193

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 21/185 (11%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M  +  D ETTGL    D II IG V   L+    NR     + P  +K    ++ +HGI
Sbjct: 1   MEFVAMDFETTGLSVDKDEIITIGLVPFTLERIYLNRAKHWTVRP-RQKLDEHSIVIHGI 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   + D P  S IF E  +    +    + H  + +  F++  L+R   + ++   +ID
Sbjct: 60  THNDIMDAPDLSDIFEEVLEHLAGR--VLVVHYHRIEREFLDRALKRRIGEGIE-FPVID 116

Query: 126 TLS-------------IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           T+                R +     +  L     RYG+     + H AL D+   +++ 
Sbjct: 117 TMEIETLIQKRLTAGLWNRLRGKKPESVRLGQSRMRYGLP--AYTPHHALTDAIATAELL 174

Query: 172 IKMMV 176
              + 
Sbjct: 175 QAQIA 179


>gi|254286229|ref|ZP_04961188.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           AM-19226]
 gi|150423644|gb|EDN15586.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           AM-19226]
          Length = 209

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 72/175 (41%), Gaps = 11/175 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD K   ++ I A +++D      + F+V LC   +     ++++H I  
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLC-APQSLDSGSVRIHRIRH 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L D  S      +  +F   +    + ++  +D   ++   ++    PL    I  + 
Sbjct: 89  QDLHDGLSEKEALLQLIEFIGNR--PLVGYHIHYDKTILDIACRKHLGFPLPNRLIEVSQ 146

Query: 128 SIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
               +      N      L ++C+   + +  +  H AL D+   + V++++  G
Sbjct: 147 IYHDKLEKHLPNAYFDLSLEAICRHLDLPLQDK--HDALQDAIAAALVFVRLTKG 199


>gi|254228134|ref|ZP_04921563.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp.
           Ex25]
 gi|262393911|ref|YP_003285765.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|151939207|gb|EDN58036.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp.
           Ex25]
 gi|262337505|gb|ACY51300.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
          Length = 239

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 73/190 (38%), Gaps = 21/190 (11%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              +++  +  D ETTGL+ +   II IG V         R  + +     R    +++ 
Sbjct: 42  TPLSEVEFVALDFETTGLNPEKHDIITIGLVPFNLKRIFLRNSRHWKVRPQRALDEDSVI 101

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDP 120
           +HGIT   L D P    I SE     +      + H  + +  F++  L+ R+ +    P
Sbjct: 102 IHGITHSELIDAPDLGDILSELLPCLS--GKIIVVHYRRIEREFLDKALKSRLGEGIEFP 159

Query: 121 SRIIDTLS-------------IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHL 166
             +IDTL                R K     +  L    +RYG+     + H AL D+  
Sbjct: 160 --VIDTLHLEETIQQKRSGSLWERLKGKKPESVRLAQSRRRYGLP--DYTPHHALTDAIA 215

Query: 167 LSDVYIKMMV 176
            +++    + 
Sbjct: 216 TAELLQAQIA 225


>gi|168702572|ref|ZP_02734849.1| exonuclease [Gemmata obscuriglobus UQM 2246]
          Length = 183

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 10/157 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET      +   I +  VE    +K  R   V + P   +      ++HGIT  
Sbjct: 18  FVAIDFETADHGPDSACAIGLARVE---NNKVVRREAVLIRPPRPRV--MFTEVHGITWP 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++   F  ++               AHNA FD   ++A       D +     + T+ 
Sbjct: 73  MVQNASPFGDVWRGLLPIIEGA-KFLAAHNASFDRRVLHACCIAAGLD-VPALPFVCTVQ 130

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           IARRK      +L ++C+R GI + H   H A  D+ 
Sbjct: 131 IARRKWALKPANLPAVCRRLGIGLIH---HHAGSDAE 164


>gi|167763751|ref|ZP_02435878.1| hypothetical protein BACSTE_02131 [Bacteroides stercoris ATCC
           43183]
 gi|167697867|gb|EDS14446.1| hypothetical protein BACSTE_02131 [Bacteroides stercoris ATCC
           43183]
          Length = 163

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 9/161 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   +  +G V + +  +   ++   + P     +    ++HG+T  
Sbjct: 4   FAAIDFETA--NEQRTSVCSVGVVIVRNG-EIADSYYSLIRPEPEYYTYWNTRVHGLTLA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P F +++ E       +    +AHN  FD   + A  +    D  D      TL 
Sbjct: 61  DTSRSPVFPAVWQEIAPRI--EGLTLVAHNKAFDESCLKAVFRMYGMDYPDYD-FRCTLQ 117

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            +RR         L+++    G  +     H AL D+   +
Sbjct: 118 ASRRAIKGLPDYQLHTVAAWCGYRLEQH--HHALADAEACA 156


>gi|258620167|ref|ZP_05715206.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus
           VM573]
 gi|262165546|ref|ZP_06033283.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
 gi|258587525|gb|EEW12235.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus
           VM573]
 gi|262025262|gb|EEY43930.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
          Length = 233

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 18/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            Q +L    +     ++ +HGIT   
Sbjct: 45  VALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQPTKPLEEGSVVIHGITHSE 104

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT--- 126
           L+       + SE +D    +    +AH    +  F+      +  D      IIDT   
Sbjct: 105 LRHAQEPEVVLSELFDAL--RGKIVVAHFRHIEREFLRQATLNL-WDEAVEFPIIDTLEI 161

Query: 127 ----------LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                     L     + P +   L     RYG+     S H AL D+   ++++  
Sbjct: 162 EHYVQNAQRSLWQRLLRRPLNSVRLGQSRLRYGLP--AYSPHHALTDAIATAELFQA 216


>gi|262171676|ref|ZP_06039354.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
 gi|261892752|gb|EEY38738.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
          Length = 233

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 18/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            Q +L    +     ++ +HGIT   
Sbjct: 45  VALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQPTKPLEEGSVVIHGITHSE 104

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT--- 126
           L+       + SE +D    +    +AH    +  F+      +  D      IIDT   
Sbjct: 105 LRHAQEPEVVLSELFDAL--RGKIVVAHFRHIEREFLRQATLNL-WDEAVEFPIIDTLEI 161

Query: 127 ----------LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                     L     + P +   L     RYG+     S H AL D+   ++++  
Sbjct: 162 EHYIQNAQRSLWQRLLRRPLNSVRLGQSRLRYGLP--AYSPHHALTDAIATAELFQA 216


>gi|118586342|ref|ZP_01543794.1| DNA-dependent DNA polymerase III, epsilon subunit [Oenococcus oeni
           ATCC BAA-1163]
 gi|118433233|gb|EAV39947.1| DNA-dependent DNA polymerase III, epsilon subunit [Oenococcus oeni
           ATCC BAA-1163]
          Length = 177

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 71/167 (42%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   +  +   + +G   + D  +  + +   + P     S    +++G+T
Sbjct: 1   MNFLAMDFETASSEPWSA--VSLGLTIVRDN-QIAQNWYSLIKPET-SFSYWNTEINGLT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P F  ++++  + +++     + HN +FD   +   L+            +DT
Sbjct: 57  ADDVLDSPKFPEVWADIKNLYDDYP-VVVGHNIRFDNNVLKQTLKYYGLKT-PRYLSLDT 114

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + ++R+  P    + L+++    G+ + H   H A  D+   + + I
Sbjct: 115 VYLSRKFQPGMVNHKLDTVVSDLGLFLEHH--HNASDDAQASAQILI 159


>gi|313203394|ref|YP_004042051.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter
           propionicigenes WB4]
 gi|312442710|gb|ADQ79066.1| Exonuclease RNase T and DNA polymerase III [Paludibacter
           propionicigenes WB4]
          Length = 182

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 71/169 (42%), Gaps = 13/169 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGI 65
           M     D ET    +  +   EIG  + ++     ++    + P      +P   ++HGI
Sbjct: 1   MNFTAIDFET----AHAEFPCEIGLTK-VENGIITKSQSWLIKPACFPYMNPWNQRVHGI 55

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +   +    +F  ++ E   +   +N   +AHNA FD+  + + L   +   +  +    
Sbjct: 56  SSADVSSASTFEELWGELKLWI--ENDYLVAHNAAFDMRVLRSVLAYYDL-AVPRTEYFC 112

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++SI+R+       + L  + + + I+ +H   H A  D+   + + +K
Sbjct: 113 SVSISRKTWKHLPSHSLGVVSQFHNISFNH---HRAGDDARACAIIALK 158


>gi|307945043|ref|ZP_07660379.1| exonuclease RNase T and DNA polymerase III [Roseibium sp.
           TrichSKD4]
 gi|307770916|gb|EFO30141.1| exonuclease RNase T and DNA polymerase III [Roseibium sp.
           TrichSKD4]
          Length = 231

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 18/175 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYS--KTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+  V D ETTGL S   + I   A   LD             + P G    PE + +H 
Sbjct: 1   MKFRVIDFETTGLPSDTRKAICEAAFCDLDAETDIIADPVSTLVDP-GHSIPPETMAVHH 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I D+ +   PS +           E++  ++AHN +F+  F          D     R I
Sbjct: 60  IRDQDVAGCPSPTEACRMLMGGMGEED-VFVAHNIEFEKFFFG------GGD----HRWI 108

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYG--ITISHRS--KHGALLDSHLLSDVYIKMM 175
            TL  A R  P + +  N + + +     +   +   H A  D+ + + +   M+
Sbjct: 109 CTLKCAVRLWPDAPSHKNQVLRYWKGLTDLGDLALPAHRAGPDTFVTAHLLRLML 163


>gi|259502638|ref|ZP_05745540.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259169453|gb|EEW53948.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 224

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 72/170 (42%), Gaps = 10/170 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67
            +  D+ET+GL+    +II IGAV+ +    T  TF   +   +G+K + +  +L G+  
Sbjct: 55  FVSLDLETSGLNPTTAQIISIGAVKRIAGHTT--TFYRLVKLQSGKKLAGDIARLTGLNS 112

Query: 68  EFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           + L  +  +      +   F   +    + +N  FD  F+   + R      + ++++D 
Sbjct: 113 QQLATEGVAVKEALIDLQSF--AKKLPIVGYNLLFDERFLQTAVIRAGIVQFN-NKMVDV 169

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L   +          L ++  RYGI       H +L D+     +  K++
Sbjct: 170 LPYVKTVDKFCDNYHLATILTRYGIKNE--QAHNSLADATATMKLVDKLI 217


>gi|291529581|emb|CBK95167.1| DNA polymerase III, alpha subunit (gram-positive type) [Eubacterium
           rectale M104/1]
          Length = 345

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 10/175 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           + +V+D+ETTG  SKN RI+   A+          + +R   +FL P           ++
Sbjct: 16  KIVVYDLETTGFKSKNTRILSFSAIRYQVSEHGMDEIDRR-NMFLNP-MMTIPAYITAVN 73

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            IT+E + D P+     +E   + N  +     +NA FD G +N   +RI      P   
Sbjct: 74  HITNEKVADCPTEYEAGAEILSYLNSADFVSGYNNANFDDGLVNEMARRIGFGKWIPKNE 133

Query: 124 IDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ID + +A+    K       L +L + +    +    H ++ D    S V   ++
Sbjct: 134 IDVMILAKAVLTKQDVPNFKLGTLAEYFHAD-AGLEFHNSIDDVIATSRVLWGLV 187


>gi|156974173|ref|YP_001445080.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116]
 gi|156525767|gb|ABU70853.1| hypothetical protein VIBHAR_01887 [Vibrio harveyi ATCC BAA-1116]
          Length = 239

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 80/204 (39%), Gaps = 29/204 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
              +++  +  D ETTGL+ + + II IG V   L+     +     + P   K   +++
Sbjct: 42  TPLSQVEFVALDFETTGLNPQKNGIITIGLVPFNLNRIFLRQAKHWKVRPQ-EKLDEDSV 100

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLD 119
            +HGIT   L D P    I     +         + H  + +  F++  L+ RI +    
Sbjct: 101 IIHGITHSELIDAPDLGEILGPLLESLA--GKIVVVHYRRIEREFLDQALRTRIGEGIEF 158

Query: 120 PSRIIDTLS-------------IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSH 165
           P  ++DTL                + K    ++  L    +RYG+     + H AL D+ 
Sbjct: 159 P--VLDTLQIEEDIQQRTSGGLWNKLKGNKPKSLRLAQSRRRYGLP--DYTPHHALTDAI 214

Query: 166 LLSDVYIKMMVGGSQINFGFKTNE 189
              ++        +QI   ++ ++
Sbjct: 215 ATGELL------QAQIAHHYQADQ 232


>gi|258624472|ref|ZP_05719419.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus
           VM603]
 gi|258583319|gb|EEW08121.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus
           VM603]
          Length = 233

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 66/177 (37%), Gaps = 18/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            Q +L    +     ++ +HGIT   
Sbjct: 45  VALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQPTKPLEEGSVVIHGITHSE 104

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS- 128
           L+       + SE +D    +    +AH    +  F+      +  D      IIDTL  
Sbjct: 105 LRHAQEPEVVLSELFDAL--RGKIVVAHFRHIEREFLRQATLNL-WDEAVEFPIIDTLEI 161

Query: 129 -----------IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                        R    P +   L     RYG+     S H AL D+   ++++  
Sbjct: 162 EHYVQNAQRSLWQRLLSRPLNSVRLGQSRLRYGLP--AYSPHHALTDAIATAELFQA 216


>gi|317505657|ref|ZP_07963560.1| exonuclease [Prevotella salivae DSM 15606]
 gi|315663242|gb|EFV03006.1| exonuclease [Prevotella salivae DSM 15606]
          Length = 175

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 6/149 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + K   +  +G V + +    +R F   + P     +    K+HG+T  
Sbjct: 17  FAAIDFETA--NGKRTSVCSVGVVIVRNGMIVDR-FYSLIHPEPDYYTYWNTKMHGLTQA 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              + P F  ++ +     ++     +AHN  FD   + A   +  +          TL 
Sbjct: 74  DTNNAPIFPEVWRKIMPLIDQ--LPLVAHNKAFDESCLKAVF-KCYQMTYPDYIFHCTLL 130

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSK 157
            +R   P  R++L  +  R G  ++    
Sbjct: 131 KSRSVWPQGRHNLGIIAARCGYNLTQHHH 159


>gi|332829852|gb|EGK02494.1| hypothetical protein HMPREF9455_01451 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 164

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 72/176 (40%), Gaps = 13/176 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+R         D ET   + +   +  +G V + +    +R F   + P          
Sbjct: 1   MLRD----FAAIDFETA--NEQMSSVCSVGIVIVRNGIICDR-FYSLIQPEPNYYIYGNS 53

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HG+T E   +   FS ++        E     +AHN  FD   + A  +    D  D 
Sbjct: 54  NVHGLTYEDTINADVFSKVWMLIEPLIGE--LPLVAHNKGFDETCLKAVFKTYRMDYPD- 110

Query: 121 SRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            R   TL+ +RR+     N  L+++ +  G  +++   H AL D+   +++ ++++
Sbjct: 111 YRFYCTLAASRRQLRHLSNHQLHTVAEDCGYILTNH--HNALADAEACAEIALQLL 164


>gi|239994204|ref|ZP_04714728.1| ribonuclease T [Alteromonas macleodii ATCC 27126]
          Length = 151

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 12/142 (8%)

Query: 51  NGRKNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFD 102
            G    P AL+ +GI     L+     S    +            + Q +  +AHNA FD
Sbjct: 4   EGANLEPAALEFNGIDPNCALRGAIEESEAMKDLCKGIRKAQKNADCQRSVIVAHNATFD 63

Query: 103 VGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
             F+NA ++R N  + P  P    DT S+A       +  L   C+  GI       H A
Sbjct: 64  QSFVNAAIERCNIKRTPFHPFVSFDTTSLAGLAL--GQTVLVKACRAAGIAFDQSEAHSA 121

Query: 161 LLDSHLLSDVYIKMMVGGSQIN 182
           L D+   ++++  M+     + 
Sbjct: 122 LYDAQKTTELFCYMVNRYKALG 143


>gi|291454901|ref|ZP_06594291.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
 gi|291357850|gb|EFE84752.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 247

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 15/166 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   I FD+ETTG D +  RI+    +E+ D  +       +L   G      A  
Sbjct: 11  MGWHRELLIGFDLETTGTDPREARIVTAAVIEVADGERRGHR--TWLADPGIPIPAGATA 68

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAEL------- 110
           +HGITD     +      +     +            +A+NA FD+  + AEL       
Sbjct: 69  VHGITDARAAAEGSPPDRVADAVAEALTGYWRAGVPVVAYNAPFDLTLLAAELRRHRLPS 128

Query: 111 --QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154
             +R+   P+ P     T+  A  ++      L+++C  YG+T+  
Sbjct: 129 LAERLGGAPVGPVIDPLTVDRAVDRYRKGSRRLSAVCAEYGVTLEE 174


>gi|90407122|ref|ZP_01215310.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3]
 gi|90311698|gb|EAS39795.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3]
          Length = 238

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 77/209 (36%), Gaps = 29/209 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL 60
            + + +  +  D ETTGLDSK + II IG V          +  + ++ P        ++
Sbjct: 41  TKLSDIEFVALDFETTGLDSKQNSIISIGLVPFDLQRIYCRKAKKWYINPED-NLKENSI 99

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGIT   L+  P   SI               + H  + +  F + +L R        
Sbjct: 100 IIHGITHSDLQGAPDLLSILEPLLKELA--GKVVVVHYRRIERDFFDLDL-RAQLKEGII 156

Query: 121 SRIIDTLS--------------IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +IDT+                  + H S    L +   RY +     S H AL D+  
Sbjct: 157 FPVIDTMQIEADVQNKYSKGFINWLKGHQSESIRLANSRVRYNLP--AYSPHDALTDAIA 214

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKE 195
            +++        +QI + F  NED   KE
Sbjct: 215 TAELL------QAQIKYHF--NEDTPIKE 235


>gi|289705138|ref|ZP_06501542.1| exonuclease [Micrococcus luteus SK58]
 gi|289558166|gb|EFD51453.1| exonuclease [Micrococcus luteus SK58]
          Length = 228

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 85/216 (39%), Gaps = 10/216 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M     +R   FD+ETTG D +   I+    V + ++ +   + +  + P G     EA 
Sbjct: 1   MTWHESIR-AGFDLETTGRDPRTALIVTATLVMVDEHGRAASSAEWLVDP-GVPIPAEAA 58

Query: 61  KLHGITDEFL-KDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKD 116
           ++HG+T E    +    +   +E  +   +        +A N  +D   ++ E +R    
Sbjct: 59  EVHGVTTERAQAEGMPAAQGVAEITETLRDLFAAGIPVVAFNGVYDFTVMDREARRHGLT 118

Query: 117 PLDPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           PL+   +ID   L     +    +  L+++ + YG+T+ +   H +  D+     V   +
Sbjct: 119 PLEARPVIDPFVLDKQVDRFRKGKRTLSAVSEHYGVTLEN--AHTSAADALAAVQVADAL 176

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
                Q+        +R  + + +   +     R K
Sbjct: 177 AAQYEQLRMAPADLHERQVRWKAEQAESFEQYLRRK 212


>gi|253700819|ref|YP_003022008.1| exonuclease RNase T and DNA polymerase III [Geobacter sp. M21]
 gi|251775669|gb|ACT18250.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M21]
          Length = 312

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 22/181 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV------FLCPNGRKNSPEALKLH 63
           +  D ETTGLD K D++IE+G V      +T   F++      F  P G     E  ++ 
Sbjct: 55  LCLDTETTGLDYKRDKVIELGIVAFEYDPETGEIFRISERYSGFEDP-GVPIPEEVKEIT 113

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+D+ ++ + +F      F +   E++   IAHNA FD  F+ A               
Sbjct: 114 GISDDMVRGQ-AFDD---PFINLLAEKSHLVIAHNAAFDRKFVEARF-----PAFTKLPW 164

Query: 124 IDTLSI-ARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSH-LLSDVYIKMMVGGSQ 180
             T+S         S   L  L  K   +TI   + H AL D+  +L  +  ++ V G+ 
Sbjct: 165 ACTVSQIDWGAERVSSRTLEYLLFKTASLTI---NAHRALDDAEGVLGLLLERLPVTGAP 221

Query: 181 I 181
           I
Sbjct: 222 I 222


>gi|332291494|ref|YP_004430103.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169580|gb|AEE18835.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 1463

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 79/235 (33%), Gaps = 21/235 (8%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL         D     R I+I      +           + P+G     +
Sbjct: 2   YLIFDTETTGLPKNWNAPLTDSDNWPRAIQIAWQLHDEMGNVIEHQDYLIKPDGFDIPYD 61

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KD 116
           A ++HGI+     +D    S + S+F +    ++   +  N  FD   + AE  R+N  +
Sbjct: 62  AERIHGISTALAERDGIELSEVLSKF-NIALSKSKYVVGQNVGFDTNIMGAEFHRLNIGN 120

Query: 117 PLDPSRIIDTLSIARRKH------PSSRNDLNSLCKRYGITISH--RSKHGALLDSHLLS 168
            L    ++DT +               +  L +L + +           H A  D    +
Sbjct: 121 DLQELPVLDTCTEKTATLCQLPGGRGGKFKLPTLTELHKHLFGEGFGEAHNATADVEATT 180

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
             +++++              D F +  +     I+ +        + + +    
Sbjct: 181 RCFLELIRQRVYTKEELDVAPDYFERFSQSNPQPITFIGLKHINLKKASAKIAQA 235


>gi|325269993|ref|ZP_08136602.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM
           16608]
 gi|324987716|gb|EGC19690.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM
           16608]
          Length = 896

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 22/176 (12%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-------P 57
           N+   +VFD ETTGLD  +D IIEI A+ +           +++  +            P
Sbjct: 510 NEAGIVVFDTETTGLDVFSDDIIEIAAIRIKGGEIIGDPLDLYIETDKPILPKLGDKENP 569

Query: 58  EALKLHGITDEFLKD---KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
                H    +   D    P  +     F  +   +    + HNA +D   I+  L+R  
Sbjct: 570 MYSIYH---AKMAADRLLAP--ADALQRFLAYIGTR--PVLGHNASYDYNIIDNCLKRYC 622

Query: 115 KDPL--DPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLL 167
            D +    +R  D+L + R   P      L SL + +   +   + H A+ D    
Sbjct: 623 NDTMQTHGNRCFDSLKLIRLLAPGLHSYKLESLLETF--RLKGVNSHRAIDDVRAT 676


>gi|254447860|ref|ZP_05061325.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
           HTCC5015]
 gi|198262640|gb|EDY86920.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
           HTCC5015]
          Length = 238

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 68/178 (38%), Gaps = 17/178 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  DIETTGL+++ D+I+ IG VE               + P   + S  ++ +HGIT  
Sbjct: 51  LAIDIETTGLNAERDKIVSIGLVEFDASRVYLASAKHWLVNPG--ELSDSSVIVHGITHS 108

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-- 126
            +   P+  ++  E       + +  + H    +  F       +   P     +IDT  
Sbjct: 109 DVSRAPTIDAVIPELLRAMAGRLS--VVHYRAMEREFFRMLGFSLWSQPWL-FPVIDTFA 165

Query: 127 -----LSIARRKHPSSRN-DLNSLC---KRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                L  ++      RN  L SL     R    +     H AL+D+   +++    +
Sbjct: 166 LETTCLKQSQGWFDRFRNKSLPSLRLPDARLRYHLPEYENHDALVDAIATAELLQAQI 223


>gi|260770659|ref|ZP_05879590.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260614385|gb|EEX39573.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|315178389|gb|ADT85303.1| DNA polymerase III subunit epsilon [Vibrio furnissii NCTC 11218]
          Length = 212

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 74/178 (41%), Gaps = 11/178 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHG 64
           +   +  D ETT LD     ++ I A +++     T++ F+V L    +     ++++H 
Sbjct: 27  EQEFVSLDCETTSLDPNRAELVTIAATKIIGNRILTSQPFEVRLR-APQSLDSGSVRIHR 85

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I  + L D  S     +    F   +    + ++ ++D   ++   +R    PL  S I 
Sbjct: 86  IRHQDLVDGISEQDALTRLIAFIGNR--PLVGYHIRYDKKILDIACRRHLGFPLPNSLIE 143

Query: 125 DTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            +     +      N      L+++C+   + +  +  H AL D+   + VY+++  G
Sbjct: 144 VSHIYHDKLEKHLPNAYFDLSLDAICRHLDLPLQDK--HDALQDAITAALVYVRLTKG 199


>gi|239918000|ref|YP_002957558.1| DNA polymerase III, epsilon subunit [Micrococcus luteus NCTC 2665]
 gi|281415824|ref|ZP_06247566.1| DNA polymerase III subunit epsilon [Micrococcus luteus NCTC 2665]
 gi|239839207|gb|ACS31004.1| DNA polymerase III, epsilon subunit [Micrococcus luteus NCTC 2665]
          Length = 228

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 85/216 (39%), Gaps = 10/216 (4%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M     +R   FD+ETTG D +   I+    V + ++ +   + +  + P G     EA 
Sbjct: 1   MTWHESIR-AGFDLETTGRDPRTALIVTATLVMVDEHGRAASSAEWLVDP-GVPIPAEAA 58

Query: 61  KLHGITDEFL-KDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKD 116
           ++HG+T E    +    +   +E  +   +        +A N  +D   ++ E +R    
Sbjct: 59  EVHGVTTERAQAEGMPAAQGVTEITETLRDLFAAGIPVVAFNGVYDFTVMDREARRHGLT 118

Query: 117 PLDPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           PL+   +ID   L     +    +  L+++ + YG+T+ +   H +  D+     V   +
Sbjct: 119 PLEARPVIDPFVLDKQVDRFRKGKRTLSAVSEHYGVTLEN--AHTSAADALAAVQVADAL 176

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
                Q+        +R  + + +   +     R K
Sbjct: 177 AAQYEQLRMAPAELHERQVRWKAEQAESFEQYLRRK 212


>gi|255745686|ref|ZP_05419634.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|255736761|gb|EET92158.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
          Length = 233

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 18/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            + +L    +    E++  HGIT   
Sbjct: 45  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEDESIVFHGITHSE 104

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   +   +  E  +         + H    +  F+      I  + ++   ++DTL I
Sbjct: 105 LQHAQAPEQVLKELLEAL--HGKIVVVHFRHIERDFLRQISLNIWGEAIE-FPVLDTLEI 161

Query: 130 ARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R+               P     L     RY +     S H AL D+   ++++  
Sbjct: 162 ERQLLDKQRSLWQRIARRPLPSIRLGQSRMRYHLPPY--SPHHALTDAIATAELFQA 216


>gi|218510298|ref|ZP_03508176.1| DNA polymerase III subunit epsilon [Rhizobium etli Brasil 5]
          Length = 72

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/72 (54%), Positives = 54/72 (75%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          MR+I+FD ETTGLD++ DRIIEIG +EL ++  T  T  +++ P  +K  P+AL +HGIT
Sbjct: 1  MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60

Query: 67 DEFLKDKPSFSS 78
          DEFLKDK +F+ 
Sbjct: 61 DEFLKDKKAFAE 72


>gi|187734853|ref|YP_001876965.1| Exonuclease RNase T and DNA polymerase III [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187424905|gb|ACD04184.1| Exonuclease RNase T and DNA polymerase III [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 197

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 17/166 (10%)

Query: 9   KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
               D E+ G    + D+ ++IG             +  ++    +     A ++HGIT 
Sbjct: 13  FAAIDFESAGAARGETDQPVQIGIAACPRLEDEPELWTSYIAVE-KPVLWSASQVHGITT 71

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D PSF S++ E      +  A  + HN   +  F+          P      +DTL
Sbjct: 72  EMLADAPSFPSLWPEIRSRLGQ--AVVVGHNPATERKFLRR-FPGHGFGP-----WLDTL 123

Query: 128 SIARRKHPS-SRNDLNSLCKRYGIT------ISHRSKHGALLDSHL 166
           ++ R   P  +   L+SLC   G+T      +  R  H AL D+  
Sbjct: 124 ALGRMCVPGLADYSLSSLCGALGLTCSVEALLPARRWHDALYDALA 169


>gi|329121817|ref|ZP_08250433.1| exonuclease [Dialister micraerophilus DSM 19965]
 gi|327468090|gb|EGF13578.1| exonuclease [Dialister micraerophilus DSM 19965]
          Length = 195

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 10/162 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+    D ET            +G V   D SK    +   + P       E ++++GI 
Sbjct: 1   MKYTAIDFETA--FWGKGNACSLGIVIS-DGSKLTDEWYDLIRPVHLNFDEECIRVNGIH 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +KDKP F   +++     N   A   AHNA FD G +   + R    P       DT
Sbjct: 58  PEDVKDKPEFPYYWNKISGLLNGTVA--FAHNAPFDFGVLANTIDRYEL-PDINFYWGDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           + I+R        + LN++ +      +H   H AL D+   
Sbjct: 115 VEISRILWKKLPNHKLNTVAEFLNFEFNH---HQALDDARAC 153


>gi|261749409|ref|YP_003257094.1| bifunctional DNA polymerase III subunit alpha/DNA polymerase III,
           epsilon subunit [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497501|gb|ACX83951.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase
           III, epsilon subunit (dnaQ) fusion protein
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 1435

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 85/216 (39%), Gaps = 23/216 (10%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++ D ETTGL    +          R+++I                  + P+       
Sbjct: 2   YLIVDTETTGLPVNYNFPISNTENWPRVVQIAWQLHDFSGNLVEFKNFIIKPDHYDIPFN 61

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKD 116
           A K+HGIT+E   K+      +  EF   F E++   I HN +FD+  I     ++  + 
Sbjct: 62  AFKIHGITNEIAEKNGEDLIFVLKEFKKSF-EKSKYLIGHNLEFDIKVIECEFFRKKEQI 120

Query: 117 PLDPSRIIDT--LSIARRKHPSSRND-----LNSL-CKRYGITISHRSKHGALLDSHLLS 168
                +I+DT  +S++  + P  R       L  L  K +G  +SH   H A  D    +
Sbjct: 121 SFKRKKILDTKEVSVSYCQLPGIRKKFKWPTLTELYYKLFGTKLSH--SHNAANDVKATA 178

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204
             +++++  G   +   K +E+   +  K     IS
Sbjct: 179 RCFLELLRLGIISSENLKIDENFILQFRKLHQSTIS 214


>gi|261248373|emb|CBG26210.1| exonuclease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
          Length = 189

 Score = 99.5 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 68/196 (34%), Gaps = 27/196 (13%)

Query: 1   MIRKNKMRK------IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M    + R       +  D ETTGL + +  I+EI  ++       N      + P  + 
Sbjct: 1   MTISQRARYWLEEGFLFIDTETTGLGA-DAEIVEICIIDSHGSIMLN----TLIKPT-KS 54

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              E + +HGIT+E +   P+++ I     + F      ++ +NA +D+  I        
Sbjct: 55  IPDEEIAIHGITNEMVAFAPAWTDICRTLEELFMRFG--FVIYNADYDIRLIKQTYALHG 112

Query: 115 -------KDPLDPSRIIDTLSIARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALL 162
                        S     L    R  P        + L    +R G+ +     H AL 
Sbjct: 113 QSSVAAPYMLAYNSVCAMMLYAEYRDEPGKYKGYKWHKLVDAAEREGVKLEG-QAHRALA 171

Query: 163 DSHLLSDVYIKMMVGG 178
           D  +   +   +  GG
Sbjct: 172 DCKMTLGLVRALARGG 187


>gi|239983070|ref|ZP_04705594.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 237

 Score = 99.5 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 15/166 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   I FD+ETTG D +  RI+    +E+ D  +       +L   G      A  
Sbjct: 1   MGWHRELLIGFDLETTGTDPREARIVTAAVIEVADGERRGHR--TWLADPGIPIPAGATA 58

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAEL------- 110
           +HGITD     +      +     +            +A+NA FD+  + AEL       
Sbjct: 59  VHGITDARAAAEGSPPDRVADAVAEALTGYWRAGVPVVAYNAPFDLTLLAAELRRHRLPS 118

Query: 111 --QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154
             +R+   P+ P     T+  A  ++      L+++C  YG+T+  
Sbjct: 119 LAERLGGAPVGPVIDPLTVDRAVDRYRKGSRRLSAVCAEYGVTLEE 164


>gi|114562725|ref|YP_750238.1| exonuclease, RNase T and DNA polymerase III [Shewanella
           frigidimarina NCIMB 400]
 gi|114334018|gb|ABI71400.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
           frigidimarina NCIMB 400]
          Length = 229

 Score = 99.5 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 15/179 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             D+E TGLD  +D++I IG V +++     ++   + +  +G  +  ++  +HGI D  
Sbjct: 45  AIDLEMTGLDPIHDQVISIGLVPIINGVIPLDKAQHMMISISG--SVGQSATVHGIVDNQ 102

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L    + +     F      +    +AH+A  D+ FI  +L R     + P   IDTL+I
Sbjct: 103 LHMALTLAEAIDWFLS--KTKGYILVAHHAPLDIQFIQQQLIRCFGQSI-PLVFIDTLAI 159

Query: 130 ARRK-------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +++              LN+   RY + +   S H AL+D+   +++ +  +     I
Sbjct: 160 EKKRCLMQQPVLKEGSLRLNASRTRYRLPVY--SAHNALIDALSCAELLLAQVSAMGDI 216


>gi|116491633|ref|YP_811177.1| DNA polymerase III, epsilon subunit or related 3'-5' exonuclease
           [Oenococcus oeni PSU-1]
 gi|116092358|gb|ABJ57512.1| DNA polymerase III, epsilon subunit-like 3'-5' exonuclease
           [Oenococcus oeni PSU-1]
          Length = 177

 Score = 99.5 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 71/167 (42%), Gaps = 9/167 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   +  +   + +G   + D  +  + +   + P     S    +++G+T
Sbjct: 1   MNFLAMDFETASSEPWSA--VSLGLTIVRDN-QIAQNWYSLIKPET-SFSYWNTEINGLT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + D P F  ++++  + +++     + HN +FD   +   L+            +DT
Sbjct: 57  ADDVLDSPKFPEVWADIKNLYDDYP-VVVGHNVRFDNNVLKQTLKYYGLKT-PRYLSLDT 114

Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +S+ R+  P    + L+++    G+ + H   H A  D+   + + I
Sbjct: 115 VSLPRKFQPGMVNHKLDTVVSDLGLFLEHH--HNASDDAQASAQILI 159


>gi|290473715|ref|YP_003466589.1| putative DNA-directed DNA polymerase [Xenorhabdus bovienii SS-2004]
 gi|289173022|emb|CBJ79795.1| putative DNA-directed DNA polymerase [Xenorhabdus bovienii SS-2004]
          Length = 245

 Score = 99.5 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 79/198 (39%), Gaps = 16/198 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D ETTGL S ++ I    ++   D +    T    + P  +K  P+A ++H IT+E
Sbjct: 21  IVILDTETTGLKSDDEIIEI--SIINADGNVLLDT---LIKPQ-KKIPPDATRIHRITNE 74

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ KP +S ++ ++ +    +    + +N  +D   I    ++              L 
Sbjct: 75  DVQHKPLWSDVYKKYREIV--EGKTVVIYNKSYDTKIIRQTCKKYELPTPRIKSECAMLL 132

Query: 129 IA-------RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            A       +R      + L     +  I ++    H AL D+ +  ++   M      +
Sbjct: 133 YAKYEGIINKRTCEYKWHKLTDAIYKNNIQVTGE-AHRALTDARMTLELLKFMACAEVNV 191

Query: 182 NFGFKTNEDRFFKEEKKT 199
           +     N+   +K+ K +
Sbjct: 192 SPRVHMNDSVHYKKNKPS 209


>gi|149926803|ref|ZP_01915062.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
 gi|149824355|gb|EDM83573.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
          Length = 308

 Score = 99.5 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 24/176 (13%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVF--LCPNGRKNSPEA 59
           + ++ +V D ETTGLD     +IE+GAV +    D          F  L       +PE 
Sbjct: 42  SPVKVLVVDTETTGLDYATCEVIEVGAVLIEVDQDTGAIGAVLGTFGGLEEPKVAITPEN 101

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGIT+E +K +  F             + A ++AHNA FD  F+           L+
Sbjct: 102 SAIHGITNEMVKGQ-RFDEAA---LKALCSEAALFVAHNAAFDKPFMLRRF-----PWLE 152

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSL---CKRYGITISHRSKHGALLDSHLLSDVY 171
            S    T         +     L  L   C  +         H A+ D + L  V 
Sbjct: 153 KSIWACTFRELPWTQENYSGRKLEYLLSDCGYF------HGAHRAVEDCNALVHVL 202


>gi|86141808|ref|ZP_01060332.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis
           MED217]
 gi|85831371|gb|EAQ49827.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis
           MED217]
          Length = 1460

 Score = 99.5 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 91/260 (35%), Gaps = 37/260 (14%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL         D     R I+I      D           + P+G     +
Sbjct: 2   YLIFDTETTGLPKNWSAPITDSDNWPRAIQIAWQLHDDMGNCIEHEDYLIRPDGFDIPFD 61

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-D 116
           A ++HGI+ E   +D      +  +F     E+    +  N  FDV  + AE  R++  +
Sbjct: 62  AERIHGISTELAQRDGLPLGEVLGKFKAAL-ERTKFVVGQNVGFDVNIMGAEFHRLDVTN 120

Query: 117 PLDPSRIIDTLSIARRKH------PSSRNDLNSLCKRYGITISHR--SKHGALLDSHLLS 168
            L    ++DT +    +          +  L +L + +    +      H A  D    +
Sbjct: 121 QLQELPVLDTCTETTAQLCQIPGGRGGKFKLPTLTELHQYLFNQPFAEAHNATADVEATT 180

Query: 169 DVYIKMMVG--GSQINFGFKTNEDRFFKEEKKT------VPNISLLKRDKPLFTR----- 215
             + +++     +Q            F E          + +I+L K    +        
Sbjct: 181 RCFFELVRRRIFTQEELDVPAGYFENFSEANPQPIEFIGLKHINLKKASDEIRKELQKAD 240

Query: 216 ---ITKEELDEHDKTIQTLG 232
              I+KEE+ E+ + +  + 
Sbjct: 241 QADISKEEIKENKEQLAKVD 260


>gi|86130781|ref|ZP_01049380.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134]
 gi|85818192|gb|EAQ39352.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134]
          Length = 1463

 Score = 99.5 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 77/230 (33%), Gaps = 21/230 (9%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL         D     R I+I      +  +        + P+G     +
Sbjct: 2   YLIFDTETTGLPKNWNAPITDSDNWPRCIQIAWQLHDEMGQVIEHQDYLVKPDGFDIPYD 61

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KD 116
           A ++HGI+     KD  + S +   F +    Q    +  N  FD   + AE  R+N  +
Sbjct: 62  AERIHGISTALAEKDGVALSEVLENF-NIALSQAKYVVGQNVGFDTNIMGAEFHRLNIGN 120

Query: 117 PLDPSRIIDTLSIARRKH------PSSRNDLNSLCKRYGITISH--RSKHGALLDSHLLS 168
            L    ++DT +               +  L +L + +           H A  D    +
Sbjct: 121 DLQELPVLDTCTEKTATLCQLPGGRGGKFKLPTLTELHKHLFGEGFGEAHNATADVEATT 180

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
             +++++              D F +  +     I  +        + ++
Sbjct: 181 RCFLELIRQRVYTKEELDVQPDYFDRFSQANPQPIEFIGLKHINLKKASE 230


>gi|254514041|ref|ZP_05126102.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
           NOR5-3]
 gi|219676284|gb|EED32649.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
           NOR5-3]
          Length = 183

 Score = 99.5 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 70/175 (40%), Gaps = 15/175 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGI 65
           M  ++ D E +GLD     ++ +G V +              +    R++  ++  +H +
Sbjct: 1   MSFLICDAEMSGLDPAKAELLSMGWVRVEGLEIVMGSAEHRLIRN--RRSVGQSATIHQL 58

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D  L++    + + S+F           + HNA+ D  F++   ++    PL     +D
Sbjct: 59  RDCELREADDITEVLSDFLQ--AAAGCVLVFHNARLDTAFLDRAAKQAFGTPLLL-PTVD 115

Query: 126 TLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           TL + +R               L +   RYG+   H S H AL D+   +++ + 
Sbjct: 116 TLWLEQRLLQRQERPIGQGDLRLGACRDRYGLI--HHSAHNALTDAMATAELLLA 168


>gi|261251373|ref|ZP_05943947.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
 gi|260938246|gb|EEX94234.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
          Length = 239

 Score = 99.5 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 23/184 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGLDS ND II IG V   L+    N+     + P  ++ + E++ +HGIT 
Sbjct: 49  FLAMDFETTGLDSDNDDIITIGTVPFNLNRIFINQAQHWTVRP-RKQLAEESVVIHGITH 107

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIIDT 126
             + D P  S I+ +  +         + H  + +  F + A + RI +    P  ++DT
Sbjct: 108 SDVLDAPDLSGIYEQVLE--QMSGKIMVVHYQRIEREFFDKALMARIKEGIEFP--VVDT 163

Query: 127 LSIARRKHPSSRN--------------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + I  +                      L +   RYG+     + H AL D+   +++  
Sbjct: 164 MHIETQLQQKQSGGLFNKILGKKPASVRLGASRSRYGLP--QYTPHHALTDAVATAELLQ 221

Query: 173 KMMV 176
             + 
Sbjct: 222 AQLA 225


>gi|254229568|ref|ZP_04922981.1| DNA polymerase III, alpha subunit [Vibrio sp. Ex25]
 gi|151937941|gb|EDN56786.1| DNA polymerase III, alpha subunit [Vibrio sp. Ex25]
          Length = 226

 Score = 99.5 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 65/185 (35%), Gaps = 25/185 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +      I+ D ETTGL + +  I+E  A+               + P       +A 
Sbjct: 22  MKKLPTENAIIIDTETTGLGA-DAEIVEFTAICANSGEVIVDE---LVKPTC-SIPADAT 76

Query: 61  KLHGITDEFLKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----- 114
            +HGIT+E +KD P F  +FS  F    N +    I +N+ FD   I   L +       
Sbjct: 77  AIHGITNEDVKDAPDFHLMFSNRFLPLLNGR--PIIIYNSDFDTRLIIQSLDKHCNAAYV 134

Query: 115 ---KDPLDPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALL 162
               D      +     +   +     N          L + C +  + +S    H AL 
Sbjct: 135 QSVHDLFFKFCVPQCAMLWYAEFYGVWNEYHEDYKWQSLTNACAQQHVDVSDLIAHRALA 194

Query: 163 DSHLL 167
           D  + 
Sbjct: 195 DCEMT 199


>gi|220920098|ref|YP_002495399.1| DNA polymerase III subunit epsilon [Methylobacterium nodulans ORS
           2060]
 gi|219944704|gb|ACL55096.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
          Length = 223

 Score = 99.5 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 77/170 (45%), Gaps = 8/170 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGLD + D I+ + A+ +      T+ +F+  +  + R +SPEA+K+H + + 
Sbjct: 32  VALDCETTGLDPRRDEIVAVAAIRIRGDRILTSESFRATV-QSQRPSSPEAIKVHRLLEA 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTL 127
            ++       +  E   F   +    + +   FDVG ++   +RI +  L   R  +  L
Sbjct: 91  EIRQGMPHDVMLPELLRFIGSR--PVVGYYTDFDVGMVDKYARRILRIRLPNPRIDVSAL 148

Query: 128 SIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             A +   +      DL+       + +    +H A  D+ + + +Y+++
Sbjct: 149 YYACKYRDAPDYVKIDLSFARIAADLGLPALPQHDAFNDALMTAMMYVQL 198


>gi|318041263|ref|ZP_07973219.1| putative DNA polymerase III, epsilon subunit [Synechococcus sp.
           CB0101]
          Length = 304

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 84/224 (37%), Gaps = 16/224 (7%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
             R ++ D ETTGLD + DR IE+GAV      ++  +    L P  +     A  ++GI
Sbjct: 72  PQRLLILDTETTGLDPQRDRCIELGAVLFDVPRRSVLSQVSLLLPCEQNP---AQAVNGI 128

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRII 124
                +    +      F       +   +AHNA FD  +   A L  I+K  L     I
Sbjct: 129 DPRLTQQPQPWQQGLQWFEALLAASD-VVVAHNAAFDRQWFGIAPLPAIDKPWLCSMEDI 187

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQIN 182
                   +H  S   +  L   Y + +   + H AL D   L+ V+ +   +    Q  
Sbjct: 188 ---RWPADRHLRSNPSVRDLALAYSVPVW--AAHRALTDCIYLAQVFERCSDLEPLLQQG 242

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPL----FTRITKEELD 222
              +         E++     +  + ++P+      R+++ E  
Sbjct: 243 LEPRRLYRARLSYEERHKAREAGFRWNEPVSGAWSRRLSEREAA 286


>gi|327194608|gb|EGE61458.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli
           CNPAF512]
          Length = 224

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 7/156 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           IR   ++ I  D ET   + +      +G +  +D  +  R  +  + P   + S   + 
Sbjct: 24  IRYAALKTIAIDFETA--NEQRGSACSVG-LAWIDEGRVTRVEERLIRPRDMRFSGMNIA 80

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI  E ++D P F  +  EF +  +   A  IAHNA FD     A L  + +      
Sbjct: 81  IHGIRPEHVEDAPEFPEVMDEFHE--DISGATMIAHNAAFDFSVWRASLD-LYRQSYPEL 137

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRS 156
             + +L +A+R  P    + LN + +  G+   H +
Sbjct: 138 TYLCSLKMAQRIWPHFLSHRLNLIAEHLGLRFMHHN 173


>gi|221234528|ref|YP_002516964.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus
           NA1000]
 gi|220963700|gb|ACL95056.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus
           NA1000]
          Length = 209

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 7/149 (4%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +M+ I  D ET     +      IG +  ++  +  R    ++ P G + +   +  HG
Sbjct: 6   RRMKVIAIDFETA--SEQRASPCSIG-LAWIEDGEVARVEHHYIRPPGNRFAAFNMAFHG 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I  E + D   +  +          + A  +AHNA FD+  I    +  +  P      +
Sbjct: 63  IRPEHVADADEWPDVLERIRPEL--EGALVLAHNASFDISVIRRTCEHYDV-PAPGFDYL 119

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITI 152
            T+ +AR   P    + LN +C   G+  
Sbjct: 120 CTVQVARSVWPELPSHKLNVVCGHLGVDF 148


>gi|307326746|ref|ZP_07605938.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
 gi|306887509|gb|EFN18503.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
          Length = 241

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 15/167 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    +     FD ETTG+D ++DRI+    V            +  + P G    P A 
Sbjct: 1   MPSWFEGPLAAFDTETTGVDVEHDRIVSAALVVQRGTGSLPEIRRWLVSP-GVPVPPAAT 59

Query: 61  KLHGITDEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113
           ++HG+TD  L+       P    +     +    +    +  NA FD+  ++ EL+R   
Sbjct: 60  EIHGLTDAHLQRHGRWPAPVMDEMARAIAE-QTARGTPLVVMNAPFDLTLLDRELKRHRN 118

Query: 114 ----NKDPLDPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISH 154
                   L    ++D   L     ++   R  L  LC  YG+ ++ 
Sbjct: 119 SSLAGYLSLRSMSVLDPRVLDKHLDRYRKGRRTLLDLCAHYGVELTG 165


>gi|28898677|ref|NP_798282.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28806895|dbj|BAC60166.1| putative DNA polymerase III, epsilon subunit [Vibrio
           parahaemolyticus RIMD 2210633]
          Length = 243

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 23/188 (12%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63
           +++  +  D ETTGL+ +   II IG V                + P  +K   +++ +H
Sbjct: 49  SEVEFVALDFETTGLNPEKHDIITIGLVPFNLRRIFLRDARHWKVRPQ-KKLDEDSVIIH 107

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSR 122
           GIT   L D P  S I  E     +      + H  + +  F++  L+ RI +    P  
Sbjct: 108 GITHSELIDAPDLSDILGELLPCLS--GKIIVVHYRRIEREFLDQALKARIGEGIEFP-- 163

Query: 123 IIDTLS-------------IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168
           ++DTL                R K     +  L    +RYG+     S H AL D+   +
Sbjct: 164 VLDTLQIEENIQKRSAGGIWNRLKGKRPESLRLAQSRRRYGLP--DYSPHHALTDAIAAA 221

Query: 169 DVYIKMMV 176
           ++    M 
Sbjct: 222 ELLQAQMA 229


>gi|15641303|ref|NP_230935.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586529|ref|ZP_01676315.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           2740-80]
 gi|121728837|ref|ZP_01681848.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
 gi|147673833|ref|YP_001216855.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395]
 gi|153801317|ref|ZP_01955903.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-3]
 gi|153819755|ref|ZP_01972422.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
           8457]
 gi|153823215|ref|ZP_01975882.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
 gi|227081461|ref|YP_002810012.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           M66-2]
 gi|229505123|ref|ZP_04394633.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229511206|ref|ZP_04400685.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229518325|ref|ZP_04407769.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229608142|ref|YP_002878790.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236]
 gi|254848414|ref|ZP_05237764.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
 gi|298498618|ref|ZP_07008425.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
 gi|9655777|gb|AAF94449.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121549208|gb|EAX59240.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           2740-80]
 gi|121628884|gb|EAX61341.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
 gi|124123142|gb|EAY41885.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-3]
 gi|126509702|gb|EAZ72296.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
           8457]
 gi|126519275|gb|EAZ76498.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
 gi|146315716|gb|ABQ20255.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|227009349|gb|ACP05561.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           M66-2]
 gi|227013207|gb|ACP09417.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229345040|gb|EEO10014.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229351171|gb|EEO16112.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229357346|gb|EEO22263.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229370797|gb|ACQ61220.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236]
 gi|254844119|gb|EET22533.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
 gi|297542951|gb|EFH79001.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
          Length = 236

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 18/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            + +L    +    E++  HGIT   
Sbjct: 48  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEDESIVFHGITHSE 107

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   +   +  E  +         + H    +  F+      I  + ++   ++DTL I
Sbjct: 108 LQHAQAPEQVLKELLEAL--HGKIVVVHFRHIERDFLRQISLNIWGEAIE-FPVLDTLEI 164

Query: 130 ARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R+               P     L     RY +     S H AL D+   ++++  
Sbjct: 165 ERQLLDKQRSLWQRIARRPLPSIRLGQSRMRYHLPPY--SPHHALTDAIATAELFQA 219


>gi|329889237|ref|ZP_08267580.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568]
 gi|328844538|gb|EGF94102.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568]
          Length = 211

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 10/159 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + +      IG +  ++          ++ P G + +   +  HGI 
Sbjct: 8   MHAVAIDFETA--NEQRASPCSIG-LAWINDGVIESVEHHYIRPPGMRFASFNIAFHGIG 64

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D   F ++ +        +    +AHNA FDV  I                 + T
Sbjct: 65  PEQVEDAEEFPAVLAAIAPRL--EGRTVLAHNAAFDVSVIRNTCDHYGL-TYPEFDYLCT 121

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           + +A+   P    + LN++C   G+   H   H A  D+
Sbjct: 122 VKLAQISWPEFPSHKLNNVCAELGVAFRH---HDAAEDA 157


>gi|260364890|ref|ZP_05777461.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|260879709|ref|ZP_05892064.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260898816|ref|ZP_05907257.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308086617|gb|EFO36312.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308093346|gb|EFO43041.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308111638|gb|EFO49178.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
          Length = 239

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 23/188 (12%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63
           +++  +  D ETTGL+ +   II IG V                + P  +K   +++ +H
Sbjct: 45  SEVEFVALDFETTGLNPEKHDIITIGLVPFNLRRIFLRDARHWKVRPQ-KKLDEDSVIIH 103

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSR 122
           GIT   L D P  S I  E     +      + H  + +  F++  L+ RI +    P  
Sbjct: 104 GITHSELIDAPDLSDILGELLPCLS--GKIIVVHYRRIEREFLDQALKARIGEGIEFP-- 159

Query: 123 IIDTLS-------------IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168
           ++DTL                R K     +  L    +RYG+     S H AL D+   +
Sbjct: 160 VLDTLQIEENIQKRSAGGIWNRLKGKRPESLRLAQSRRRYGLP--DYSPHHALTDAIAAA 217

Query: 169 DVYIKMMV 176
           ++    M 
Sbjct: 218 ELLQAQMA 225


>gi|301167502|emb|CBW27085.1| putative exonuclease [Bacteriovorax marinus SJ]
          Length = 963

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 11/167 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V DIETTG+D   D+II++G +   + +   R +   +  +G K S    KL GI  
Sbjct: 7   RWAVIDIETTGIDPSYDQIIDVGYL-QFEGTTLVRKYSSLVQYDG-KLSQFIKKLTGIDS 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L + PS+  +  E  D F       IAHNA+F+  F++    RI+ D        D+L
Sbjct: 65  KMLINAPSWQVVSPEVMDVFGHH---LIAHNAEFERSFLSDHFARID-DGSGRESYEDSL 120

Query: 128 SIARRKHPSSRN-DLNS-LCKRYGITISHRSKHGALLDSHLLSDVYI 172
                  P   +  L + +C      I+   +H    DS  L  V +
Sbjct: 121 YFLSLLFPKMSSLKLENFICDW---KIAEHEEHRGFQDSLDLLKVLL 164


>gi|148979109|ref|ZP_01815317.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
 gi|145961975|gb|EDK27264.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
          Length = 238

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 72/190 (37%), Gaps = 21/190 (11%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              +++  +  D ETTGL+   D II IG V         R  + +     +K   E++ 
Sbjct: 41  TPLSEVMFLALDFETTGLNPSKDGIITIGLVPFTLNRIYLRQARHWTLRPRQKLEEESVV 100

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDP 120
           +HGIT   + D P    +  E            + H  + +  F+N  L+ R+N+    P
Sbjct: 101 IHGITHNDIIDAPDLDEVLDEVLQAMA--GHIPVVHYRRIERDFLNNALKVRLNEGIEFP 158

Query: 121 SRIIDTLSI-----------ARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHL 166
             ++DTL I              K    +     L    +RY +     + H AL D+  
Sbjct: 159 --VLDTLEIESQIQNKLAGGLWNKLKGKKPGSVRLGQSRRRYHLP--DYTPHHALTDAIA 214

Query: 167 LSDVYIKMMV 176
            +++    + 
Sbjct: 215 TAELLQAQVA 224


>gi|327483977|gb|AEA78384.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4]
          Length = 233

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 18/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            + +L    +    E++  HGIT   
Sbjct: 45  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEDESIVFHGITHSE 104

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   +   +  E  +         + H    +  F+      I  + ++   ++DTL I
Sbjct: 105 LQHAQAPEQVLKELLEAL--HGKIVVVHFRHIERDFLRQISLNIWGEVIE-FPVLDTLEI 161

Query: 130 ARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R+               P     L     RY +     S H AL D+   ++++  
Sbjct: 162 ERQLLDKQRSLWQRITRRPLPSIRLGQSRMRYHLPPY--SPHHALTDAIATAELFQA 216


>gi|269140407|ref|YP_003297108.1| Orf81 bacteriophage 186 [Edwardsiella tarda EIB202]
 gi|267986068|gb|ACY85897.1| Orf81 bacteriophage 186 [Edwardsiella tarda EIB202]
          Length = 199

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 73/192 (38%), Gaps = 28/192 (14%)

Query: 2   IRKNKMRKI--------VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53
           +R+N ++++        + D ETTG+  +N  I+    ++          F   + P   
Sbjct: 15  LRQNAIQQVANWLRKCNILDTETTGV-KENAEIVSAAIIDQDGTVL----FHSLIKPVN- 68

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +     +HGIT+E + +KP+++ +  E     N   A  + +NA+FD+  +     + 
Sbjct: 69  PITEITTAIHGITNEMVAEKPTWAEVHDEIARILNT--APLVVYNAQFDMRMMAQSAAKH 126

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRS-KHGALLD 163
              P+  +  ++    A        N          L+     +   +   +  H AL D
Sbjct: 127 GLPPIVVNTEVNCAMEAYAHFYGQWNEEHQSYRWQSLS--MAMFQQDVDDDNIPHSALGD 184

Query: 164 SHLLSDVYIKMM 175
            +    +   M+
Sbjct: 185 VNRTLALMRSMV 196


>gi|184200651|ref|YP_001854858.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila
           DC2201]
 gi|183580881|dbj|BAG29352.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila
           DC2201]
          Length = 193

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 8/169 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGITD 67
               D ET   +        +G V + D    +  + +   P G     P  +++HGI  
Sbjct: 5   FTAIDFETA--NRSLASACALGVVRVRDGQVVDTRYSLIRPPAGHDAFEPGNVRIHGIRP 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQN--AEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             +   P+F  ++    +    ++  A  +AHNA FD G + A  +   +DP  P     
Sbjct: 63  AEVTHAPTFDRLWDWMCENITPEDPDAVLVAHNAVFDTGVVKAANRACGRDP-RPWDYAC 121

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           TL +AR  +      L S  +  G  +     H AL D+   + + + +
Sbjct: 122 TLRLARAAYTLRSYALPSASRAAGAEVEDH--HNALSDALACAGIVLDL 168


>gi|262159037|ref|ZP_06030149.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262169396|ref|ZP_06037088.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262022209|gb|EEY40918.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262029222|gb|EEY47874.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
          Length = 233

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 18/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            + +L    +    E++  HGIT   
Sbjct: 45  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEDESIVFHGITHSE 104

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   +   +  E  +         + H    +  F+      I  + ++   ++DTL I
Sbjct: 105 LQHAQAPEQVLKELLEAL--HGKIVVVHFRHIERDFLRQISLNIWGEAIE-FPVLDTLEI 161

Query: 130 ARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R+               P     L     RY +     S H AL D+   ++++  
Sbjct: 162 ERQLLDKQRSLWQRIARRPLPSIRLGQSRMRYHLPPY--SPHHALTDAIATAELFQA 216


>gi|254391300|ref|ZP_05006504.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|326440213|ref|ZP_08214947.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|197704991|gb|EDY50803.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 241

 Score = 99.1 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 60/167 (35%), Gaps = 15/167 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M          FD ETTG+D +NDRI+    V         R  +  + P G    P A 
Sbjct: 1   MTLWFDGPLAAFDTETTGVDVENDRIVAAAVVVQDMAGGRPRITRWLINP-GIPVPPGAT 59

Query: 61  KLHGITDEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           ++HG+TD+ ++       P    +               +  NA FD+  ++ EL+R   
Sbjct: 60  EVHGLTDDHVQRNGRWPAPVLEEVAKTVAGHCAA-GRPLVVMNAPFDLTILDRELRRHRA 118

Query: 116 DPLDPSRIID--------TLSIARRKHPSSRNDLNSLCKRYGITISH 154
            PL                L     ++   R  L  LC +Y + +  
Sbjct: 119 TPLSRYLEHTPLTVLDPRVLDKQLDRYRKGRRSLVDLCSQYEVVLDG 165


>gi|153819833|ref|ZP_01972500.1| ribonuclease T [Vibrio cholerae NCTC 8457]
 gi|126509614|gb|EAZ72208.1| ribonuclease T [Vibrio cholerae NCTC 8457]
          Length = 151

 Score = 99.1 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 13/135 (9%)

Query: 59  ALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAE 109
           AL+  GI D F  L+   S      E +    ++        A  +AHNA FD  F+ A 
Sbjct: 1   ALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAA 60

Query: 110 LQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +R      P  P    DT +++       +  L   CK  G+   +R  H AL D+   
Sbjct: 61  SERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKT 118

Query: 168 SDVYIKMMVGGSQIN 182
           ++++  ++     + 
Sbjct: 119 AELFCTIVNQWKALG 133


>gi|153839656|ref|ZP_01992323.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810]
 gi|260900787|ref|ZP_05909182.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|149746830|gb|EDM57818.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810]
 gi|308106848|gb|EFO44388.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
          Length = 239

 Score = 99.1 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 23/188 (12%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63
           +++  +  D ETTGL+ +   II IG V                + P  +K   +++ +H
Sbjct: 45  SEVEFVALDFETTGLNPEKHDIITIGLVPFNLRRIFLRDARHWKVRPQ-KKLDEDSVIIH 103

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSR 122
           GIT   L D P  S I  E     +      + H  + +  F++  L+ RI +    P  
Sbjct: 104 GITHSELIDAPDLSDILGELLPCLS--GKIIVVHYRRIEREFLDQALKARIGEGIEFP-- 159

Query: 123 IIDTLS-------------IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168
           ++DTL                R K     +  L    +RYG+     S H AL D+   +
Sbjct: 160 VLDTLQIEENIQKRSAGGIWNRLKGKRPESLRLAQSRRRYGLP--DYSPHHALTDAIAAA 217

Query: 169 DVYIKMMV 176
           ++    M 
Sbjct: 218 ELLQAQMA 225


>gi|74316107|ref|YP_313847.1| exonuclease [Thiobacillus denitrificans ATCC 25259]
 gi|74055602|gb|AAZ96042.1| Exonuclease [Thiobacillus denitrificans ATCC 25259]
          Length = 233

 Score = 99.1 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 70/177 (39%), Gaps = 10/177 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +  ++ R +V D+ET+GLD + DR+I IGAV       +   + +  +      +    +
Sbjct: 35  LPLDEGRCVVVDVETSGLDPRRDRLIAIGAVAVSRGKVQLGDSLE-IVLQQDTVSEKGNI 93

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI     +     +     F ++  +     +A +  FD   I   ++         
Sbjct: 94  LIHGIGGTAQRAGVPPADALLAFLEYLGKD--PLVAFHVAFDAPMIRRAMKAFLGLDFSH 151

Query: 121 SRIIDTLSIARRKHP---SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +   D   +A   +P     R  L+     + I   + ++H AL D+   + + + +
Sbjct: 152 A-WADLAYVAPALYPRLARRRRSLDDWMSEFKI--GNYARHNALADALSTAQLLLAL 205


>gi|254439757|ref|ZP_05053251.1| exonuclease superfamily [Octadecabacter antarcticus 307]
 gi|198255203|gb|EDY79517.1| exonuclease superfamily [Octadecabacter antarcticus 307]
          Length = 203

 Score = 99.1 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 15/198 (7%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
             R I  D+ET G    N  I +IG   + +     +T+ VF+ P      P   +LHGI
Sbjct: 15  PFRFIALDVETAG--KTNGGICQIGLCFVSETGAV-QTYSVFIDPE-EPFEPFNTELHGI 70

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +    +F +++   +D  N  +   + H + FD   + +   R +  P+  S   +
Sbjct: 71  SADTVAGAGTFPTVYGALFDLLNAHS--LVQH-STFDEKALTSACARYDL-PMITSHWTN 126

Query: 126 TLSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++S+AR   P  +    + L +L K  G+   H   H A  D+   + V +K        
Sbjct: 127 SVSVARHAWPELKGAGGHGLANLKKHLGLEFHH---HDAGEDARAAATVVLKAEDILGTA 183

Query: 182 NFGFKTNEDRFFKEEKKT 199
               K N    F+ E ++
Sbjct: 184 LSHLKINRQLAFQFEDRS 201


>gi|126011010|ref|YP_001039760.1| gram-positive type DNA polymerase III alpha subunit [Burkholderia
           ambifaria phage BcepF1]
 gi|119712586|gb|ABL96807.1| gram-positive type DNA polymerase III alpha subunit [Burkholderia
           ambifaria phage BcepF1]
          Length = 197

 Score = 99.1 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 71/185 (38%), Gaps = 26/185 (14%)

Query: 7   MRKIVFDIETTGLDS-------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   VFD ETTGL S       +  RIIE   +   D      T +    P G       
Sbjct: 1   MIFTVFDTETTGLPSHPLAPLDRQPRIIEFAGIVT-DGRDILHTLEFRCNP-GVALEEII 58

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW----------IAHNAKFDVGFINAE 109
            K+ G+TD  L+D+P  S  F E   FF ++              +AHN  FD   ++ +
Sbjct: 59  TKITGLTDADLRDQPDISHFFGELKSFFGKEPMPHVFGEKPKFARVAHNLSFDRNLLDYD 118

Query: 110 LQRINKDP----LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           L+R  K       + + +I T+     +       L  L  R     + +  H AL D  
Sbjct: 119 LKRRGKTLDDIGFNDALMICTVEQTTPQF-GRPMKLQELWSRARGEFTQK--HRALDDVM 175

Query: 166 LLSDV 170
            L DV
Sbjct: 176 RLHDV 180


>gi|152998334|ref|YP_001343169.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1]
 gi|150839258|gb|ABR73234.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1]
          Length = 236

 Score = 99.1 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 74/197 (37%), Gaps = 22/197 (11%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKL 62
                 +  D+ETTGLD   D II +G +  L++     +  + ++       + E++ +
Sbjct: 46  LQDTPLLALDLETTGLDPSQDEIISLGLI-PLNHKIIRCQGAKYWMAKPECSLNAESVTI 104

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H IT   L++ P   +I  E       Q    + H    +  F+     +I   PL    
Sbjct: 105 HEITHSELEEAPRLHAILDEILLALTHQ--VIVVHCVAIERQFLLKASMKIYGYPL-YFP 161

Query: 123 IIDTLS---------IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++DT+            +R        L++  +RY +       H AL D+   +++   
Sbjct: 162 VLDTMDIERQVTFKPWWKRFGRRPSLRLDACRQRYKLP--RYKAHHALTDALSSAELL-- 217

Query: 174 MMVGGSQINFGFKTNED 190
                +QI +      D
Sbjct: 218 ----QAQIAYHMDPKAD 230


>gi|262394233|ref|YP_003286087.1| DNA polymerase III subunit alpha [Vibrio sp. Ex25]
 gi|262337827|gb|ACY51622.1| DNA polymerase III alpha subunit (gram-positive type) [Vibrio sp.
           Ex25]
          Length = 205

 Score = 99.1 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 65/185 (35%), Gaps = 25/185 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +      I+ D ETTGL + +  I+E  A+               + P       +A 
Sbjct: 1   MKKLPTENAIIIDTETTGLGA-DAEIVEFTAICANSGEVIVDE---LVKPTC-SIPADAT 55

Query: 61  KLHGITDEFLKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----- 114
            +HGIT+E +KD P F  +FS  F    N +    I +N+ FD   I   L +       
Sbjct: 56  AIHGITNEDVKDAPDFHLMFSNRFLPLLNGR--PIIIYNSDFDTRLIIQSLDKHCNAAYV 113

Query: 115 ---KDPLDPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALL 162
               D      +     +   +     N          L + C +  + +S    H AL 
Sbjct: 114 QSVHDLFFKFCVPQCAMLWYAEFYGVWNEYHEDYKWQSLTNACAQQHVDVSDLIAHRALA 173

Query: 163 DSHLL 167
           D  + 
Sbjct: 174 DCEMT 178


>gi|288800983|ref|ZP_06406439.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331917|gb|EFC70399.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
          Length = 208

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 75/193 (38%), Gaps = 25/193 (12%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSP 57
            + FD ETTG+ +  +          R+++I  +   +     +  Q   + P G +   
Sbjct: 16  YLFFDTETTGIPNDYNAPSEDTNNWPRLVQIAWLITRENGDIYKELQSRIISPEGFRIPQ 75

Query: 58  EALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114
            ++ +HGIT E  ++D      + ++F +  +  +   + HN  FD+  + AEL R +  
Sbjct: 76  SSINIHGITQEKAVEDGEDLCDVLNDFVNDVDYNDVILVGHNIYFDIHVVTAELIRNDMI 135

Query: 115 --KDPLDPSRIIDTLSIARR------KHPSSRNDLNSL-CKRYGITISHRSKHGALLDSH 165
             K+ L+    I T+  +         +      L  L  K +G    +   H A  D  
Sbjct: 136 DEKETLEKINKICTMKKSTDFCKISGLYGYKYPKLQQLYYKLFGENFDN--AHDAGSDIE 193

Query: 166 LLSDVYIKMMVGG 178
                + ++   G
Sbjct: 194 ATRKCFFELKRRG 206


>gi|194333877|ref|YP_002015737.1| Exonuclease RNase T and DNA polymerase III [Prosthecochloris
           aestuarii DSM 271]
 gi|194311695|gb|ACF46090.1| Exonuclease RNase T and DNA polymerase III [Prosthecochloris
           aestuarii DSM 271]
          Length = 189

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 22/181 (12%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFLK 71
           D+ETTG +     II+IGA+  +D         +   P  G + SP+AL + G     L+
Sbjct: 11  DVETTGTNPAKHGIIQIGAIIEVDG-VVVEECNLKCAPHEGAEISPDALAISGTERSELE 69

Query: 72  DKPSFSSIFSEFWDFF--------NEQNAEWIAHNAKFDVGFINAELQ----RINKDPLD 119
            + +    +++F  F          E       +N  FD+ FI A  +    +       
Sbjct: 70  SRMTSHEAYTQFRHFLSRHIEQYDREDKCYPAGYNIHFDLNFIQAWFRHHGDKYGIGSFI 129

Query: 120 PSRIIDTL-----SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             R++D L         R+       L ++C+ +GI +     H A+ D     ++ +K+
Sbjct: 130 NWRMLDPLPLLFIKDFTRQITLPDYRLETVCRHFGIAL---HAHDAMSDIRATRELLLKL 186

Query: 175 M 175
           +
Sbjct: 187 L 187


>gi|300934269|ref|ZP_07149525.1| DNA polymerase III subunit epsilon [Corynebacterium resistens DSM
           45100]
          Length = 225

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 86/189 (45%), Gaps = 16/189 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLH 63
           ++  +  D+ETTGLDS+ DR++ IG +  +D  + + +   +  +     +   E+  +H
Sbjct: 40  QLPLLAVDVETTGLDSRKDRLLSIGWI-PVDGHEIDLSGAGYGVIEQETHETVGESATIH 98

Query: 64  GITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           G+TD+ + ++  +   + +        + A  + H  K +  FI+   Q      L  ++
Sbjct: 99  GLTDDHVHREGEAAPEVLARLLQALRGR-AMLV-HYKKVESTFISDACQDHFGTGL-KAQ 155

Query: 123 IIDTLSIARRK------HPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +DTL +ARR       HP   +  L  + +R  +   H   H AL D+   ++VY+ ++
Sbjct: 156 YVDTLELARRFIEDGGGHPKGDDLRLARIRERLELPSYHN--HNALTDALACAEVYLALI 213

Query: 176 VGGSQINFG 184
                   G
Sbjct: 214 ARTRAKTLG 222


>gi|209546045|ref|YP_002277935.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538902|gb|ACI58835.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 326

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 63/169 (37%), Gaps = 21/169 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+ ++D IIEIGAV     D         ++  L    R    E  +L GI
Sbjct: 75  VILDTETTGLNHRSDEIIEIGAVAFTFDDDGGIGDIVGIYGGLQQPSRPIPAEITRLTGI 134

Query: 66  TDEFLKDKPSFSSIFSE--FWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSR 122
           TD  ++       +             +   IAHNA FD  F  A       K       
Sbjct: 135 TDAMVEG-----QVIDMWSLSALIEPADL-IIAHNAGFDRPFCEAFSTIFAGKAWACSVS 188

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            ID    + R    ++  L  L  + G        H A+ D H L ++ 
Sbjct: 189 EID---WSARGFEGTK--LGYLVGQAG---YFHDGHRAVDDCHALLEIL 229


>gi|330898573|gb|EGH29992.1| ribonuclease T [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 186

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 17/157 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV +    K       T+   + P  G      AL+  
Sbjct: 32  PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFT 91

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI  D  L+   S  +  ++              + A  + HNA FD+GF+NA + R  +
Sbjct: 92  GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150
            ++P  P    DT ++A   +   +  L   C+  GI
Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGI 186


>gi|306836447|ref|ZP_07469422.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
 gi|304567666|gb|EFM43256.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
          Length = 454

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 23/181 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEA-LKLHGI 65
            +  D+ET   +     I +IGAV   D  +T    Q +LC  P G ++  E  + +HGI
Sbjct: 110 FVAVDVETA--NDNWGSICQIGAVRYRDGGETAS--QSWLCTPPPGLEHFAEINISIHGI 165

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   ++    F++  +E +DF        +AHN +FD   + + L     D +    +  
Sbjct: 166 TAADVEGAMPFATAAAELFDFIGSD--VIVAHNVQFDSSALRSGLLAAGAD-VPTVPLAC 222

Query: 126 TLSIARRKHPSS-----RNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +L+++R            + L ++ K   G + +H   H A  D+         ++ G +
Sbjct: 223 SLALSRDASKQGVISVANHKLPTVVKHLGGASFTH---HDATEDARAAG----TIITGLA 275

Query: 180 Q 180
           Q
Sbjct: 276 Q 276


>gi|159484124|ref|XP_001700110.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158272606|gb|EDO98404.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 398

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 71/205 (34%), Gaps = 33/205 (16%)

Query: 2   IRKNKMRKIVFDIETTGLDSK-----------------------NDRIIEIGA--VELLD 36
           +R+ +   +V D ETTG   +                         RI+ I    +    
Sbjct: 194 LRQPQGYSLVVDTETTGFPRRLPGTPMNGFIREQVPYTDLEGWSTARIVSIAWRVLAPDG 253

Query: 37  YSKTNRTFQVFLCPNGRKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNEQNA-EW 94
             +        + P G     +A+++HGI T    ++      +  E        N    
Sbjct: 254 RMELQEHGYRIVRPVGFVIPADAVQIHGISTQRATQEGLPLDQVLDELMSAIQRWNCGVI 313

Query: 95  IAHNAKFDVGFINAELQRINKD----PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150
           +AHN K+D+  I +EL R N+      L+    + T + ++  +    +    L K    
Sbjct: 314 VAHNLKYDLNVILSELYRRNRAQDVARLERMEGVCTANCSK-FYLGRYHKQAELLKAL-T 371

Query: 151 TISHRSKHGALLDSHLLSDVYIKMM 175
               R  H A  D+   +  Y+ ++
Sbjct: 372 DEDMRVAHDAECDAEACAKCYVALL 396


>gi|188589009|ref|YP_001921284.1| putative exonuclease [Clostridium botulinum E3 str. Alaska E43]
 gi|188499290|gb|ACD52426.1| putative exonuclease [Clostridium botulinum E3 str. Alaska E43]
          Length = 974

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 12/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH-GITDE 68
           I  DIETTGLD  N  IIEIGAV++ + S T  T++V + P G        KL  G+ +E
Sbjct: 12  IYLDIETTGLDENNCEIIEIGAVKIKNLSVT--TYEVLIRPKG-NVPVSIYKLCQGLKEE 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +      I  E   F   ++   I HN  F+  F++  +  I  +  D   +   L 
Sbjct: 69  DLMNSRHLEDIKKELLVFL--EDLPLICHNGGFERKFLSYHIPEIKNEIFDSMELSAILE 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R+++     +L+SL K   I +     H  L DS     V   ++
Sbjct: 127 PWRKEY-----NLDSLIKSITI-LDKDEFHRGLEDSIDTLKVVNSLL 167


>gi|149377478|ref|ZP_01895220.1| exonuclease [Marinobacter algicola DG893]
 gi|149358245|gb|EDM46725.1| exonuclease [Marinobacter algicola DG893]
          Length = 236

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 10/182 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +  R IV D+ETTGL+   D +I IGAV +  +    +  F + L       S E + 
Sbjct: 35  RLSDCRLIVLDLETTGLNPAKDNVIAIGAVAIRHNAIDLSDQFDLILRRPELDIS-ETVL 93

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI  E L              ++ N      +A+++ FD  F+   L++       P 
Sbjct: 94  IHGIGPEALTQGHETEDALLHLLEWMN--GDPILAYHSAFDQKFLEKALKQT-LGYTQPH 150

Query: 122 RIIDTLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +D   +    +P+S+     L++    + + +S  ++H A  D+ + +++ + ++   
Sbjct: 151 TWLDVAEMLPAYYPNSKTGGKGLDNWADFFDLEVS--ARHHAAADAMVTAELTLAVINKA 208

Query: 179 SQ 180
            +
Sbjct: 209 QK 210


>gi|297198375|ref|ZP_06915772.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
 gi|197714433|gb|EDY58467.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
          Length = 241

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 19/167 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    +     FD ETTG+D + DRI+    V         R  +  + P G      A 
Sbjct: 1   MTCWYEGPLAAFDTETTGVDVETDRIVSAAVVVQDAAGTRPRVSRWLVNP-GVPVPAGAT 59

Query: 61  KLHGITDEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            +HG+T+E L+       P    I     +         +  NA FD+  ++ EL+R   
Sbjct: 60  AVHGLTEEHLQRNGRWPAPVMFEIAETLAE-QAAAGRPLVVMNAPFDLTVLDRELRRHRA 118

Query: 116 DPLDPSRIIDT----------LSIARRKHPSSRNDLNSLCKRYGITI 152
             LD  R +D+          L     ++   R  L  LC+ YG+T+
Sbjct: 119 SSLD--RWLDSSPLLVLDPRVLDKHLDRYRKGRRTLTDLCEHYGVTL 163


>gi|300933650|ref|ZP_07148906.1| DNA polymerase III subunit epsilon [Corynebacterium resistens DSM
           45100]
          Length = 226

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 15/162 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +    + FD+ETTG D K  RI+    + +    + +   Q  L   G +   +A  +
Sbjct: 7   RFDPANMLSFDLETTGTDPKTCRIVTSAMISIEGRERKD---QELLADPGVEIPEQATAV 63

Query: 63  HGITDEFLKDKP-SFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPL 118
           HGIT E+ ++       + ++  +   E   + A  + +NA +D+  + A    +     
Sbjct: 64  HGITTEYARENGSPHDEVLAQTIETIREAWQRGATLVVYNAPYDLSVLRA----LEPSFT 119

Query: 119 DPSRIIDTLSIARRKHP--SSRNDLNSLCKRYGITISHRSKH 158
               + D L + R   P    +  L ++C+ YGI +++   H
Sbjct: 120 VDGLVFDPLVVDRAMDPYRKGKRRLENVCEHYGIELTN--AH 159


>gi|291295679|ref|YP_003507077.1| Exonuclease RNase T and DNA polymerase III [Meiothermus ruber DSM
           1279]
 gi|290470638|gb|ADD28057.1| Exonuclease RNase T and DNA polymerase III [Meiothermus ruber DSM
           1279]
          Length = 200

 Score = 98.8 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 74/183 (40%), Gaps = 18/183 (9%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCP-NGRKNSPEALK 61
            N++     D+ET+GL+  +D+I+ +G V +          +   + P   +  S E ++
Sbjct: 11  WNEINYWALDLETSGLEP-SDQILSVGMVPIRGGVIEFGAHYYSLVRPVRPQALSVEGIQ 69

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            H I    L+  P  + +  E      +     I H +  D+ F+    + + + P    
Sbjct: 70  AHHILPSELEAAPPLAQVLDEMEQRIGQD--VLILHFSSIDLSFLRQSYKTLGR-PWPKP 126

Query: 122 RIIDTLSIARRKHPSSR----ND------LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            ++DT  +  R +   R    +       L +    +G+      +H AL D+   ++++
Sbjct: 127 LVVDTAVLLARLNERKRWLEPHSQPYPGALGAARATFGLP--GHLEHHALWDALATAELF 184

Query: 172 IKM 174
           + +
Sbjct: 185 LVL 187


>gi|188585233|ref|YP_001916778.1| Exonuclease RNase T and DNA polymerase III [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349920|gb|ACB84190.1| Exonuclease RNase T and DNA polymerase III [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 170

 Score = 98.8 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 7/137 (5%)

Query: 35  LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW 94
           ++  +       ++ P      P  + +HGI  E ++D+P FS I+ E   +   +N   
Sbjct: 1   MEAGEIIEKQHWYIRPKPFYFHPYNVYIHGIKPEDVRDEPDFSEIWREISTYL--ENNLV 58

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITIS 153
           +AHNA FD+  +   L   + D       + T  +A ++ P   +  L S+ K   +   
Sbjct: 59  VAHNASFDISVLRHVLDLYDLDY-PQFDYLCTKKLAEKQWPHLDKYGLKSIAKFLDVKFK 117

Query: 154 HRSKHGALLDSHLLSDV 170
           H   H A+ D++  + +
Sbjct: 118 H---HDAMEDAYACAQI 131


>gi|266622988|ref|ZP_06115923.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
 gi|288865254|gb|EFC97552.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
          Length = 595

 Score = 98.8 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +VFDIETTG   + +RIIEIGAV++++   T+R F  F+ P+      E  +L  I D 
Sbjct: 523 YVVFDIETTGFSPEKNRIIEIGAVKVVNGVITDR-FSTFVNPD-VPIPFEIEQLTSINDN 580

Query: 69  FLKDKPSFSSIFSEF 83
            +   P    I  +F
Sbjct: 581 MVLSYPKIDVILPQF 595


>gi|323493392|ref|ZP_08098514.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
 gi|323312215|gb|EGA65357.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
          Length = 239

 Score = 98.8 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 80/194 (41%), Gaps = 29/194 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL S +D II IG V   L+    N+     + P  ++ + +++ +HGIT 
Sbjct: 49  FLAMDFETTGLSSDDDDIITIGTVPFNLNRIYINQAQHWTVKP-RKQLAEDSVVIHGITH 107

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIIDT 126
             + D P  S I+ +  +         + H  + +  F + A + RI +    P  ++DT
Sbjct: 108 SDVLDAPDLSGIYQQVLEQMA--GKIMVVHYQRIEREFFDKALMARIKEGIEFP--VVDT 163

Query: 127 LSIARRKHPSSRN--------------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + I        +                L +   RYG+ +   + H AL D+   +++  
Sbjct: 164 MQIETTLQQKLKGGILNKIRGRKPESVRLGASRARYGLPLY--TPHHALTDAVATAELL- 220

Query: 173 KMMVGGSQINFGFK 186
                 +QI   ++
Sbjct: 221 -----QAQIAHHYE 229


>gi|294676886|ref|YP_003577501.1| exonuclease family protein [Rhodobacter capsulatus SB 1003]
 gi|294475706|gb|ADE85094.1| exonuclease family protein [Rhodobacter capsulatus SB 1003]
          Length = 200

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 76/209 (36%), Gaps = 20/209 (9%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
             R I  D+ET   D+ +   I +  V      +    F   + P  +  +P  + LHGI
Sbjct: 7   PFRFIALDVETANADAASLCQIGLACVRHDGAIEV---FSTLIDP-RQPFAPFNVALHGI 62

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
               ++  PSF  + +        Q    +  ++ FD G I+      +  P       D
Sbjct: 63  GPAKVRGAPSFPEVLARIAPLLAPQ---IVIQHSPFDRGAIHRACHAHDL-PEPGWHWAD 118

Query: 126 TLSIARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ++ IARR  P       + L  L +  G+  +H   H A  D+   + V ++     ++ 
Sbjct: 119 SVQIARRAWPEFSGNGGHGLAHLKQALGLEFTH---HDAGEDAKAAAMVVLR-----AEA 170

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
             G +  E        +     + L R +
Sbjct: 171 QTGLRLEELIAPARRARPRRVAAALVRPR 199


>gi|282858994|ref|ZP_06268131.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
 gi|282588223|gb|EFB93391.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
          Length = 894

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 94/245 (38%), Gaps = 23/245 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALK 61
           ++   +VFD ETTGLD   D IIEI A+++ +         +++    P  +K   +   
Sbjct: 508 HQQEIVVFDTETTGLDVFTDDIIEISAIKIKEGKIVGEPLDLYIYTDKPILQKLGTKENP 567

Query: 62  LHGITDEFLKDKPSFS--SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           L+ I  + L            ++F +F +  N+  I HN  +D   ++  L+R   D +D
Sbjct: 568 LYEIYHKKLASGELLKANDALNKFIEFVD--NSTLIGHNINYDYHILDNCLKRYANDCMD 625

Query: 120 PS--RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YI-- 172
               +  D+L + R   PS R   L  L +R+   +   + H ++ D      +  Y   
Sbjct: 626 NHSYKYFDSLKLIRLLEPSLRSYKLEYLLERF--QLEGINSHQSIDDVKATISLINYCAD 683

Query: 173 -KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL------DEHD 225
              +V   Q++F       +   + +     I    +        T E +        H+
Sbjct: 684 KAQLVVEKQMDFLNHKQVFKVANKLRAYYGEIYKEAKASLYEIYSTAEPILITSLVKAHN 743

Query: 226 KTIQT 230
             +  
Sbjct: 744 AFVAD 748


>gi|311697102|gb|ADP99974.1| YacC protein [marine bacterium HP15]
          Length = 286

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 67/179 (37%), Gaps = 15/179 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R      +  D ETTGLD    +IIE+   +           +  L P+     PEA  
Sbjct: 101 VRWLDENPLFLDTETTGLD-DQAQIIELAISDAQGTIL----LETKLRPS-VSIDPEAED 154

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLD 119
           +HG+T EFL + P++  +  +            +  NA FD               + + 
Sbjct: 155 VHGLTIEFLANAPTWPEVSDQVRKIL--CGRALVIFNADFDTRMFRQTAAAYGEPVEWVS 212

Query: 120 PSRIIDTLSIARRKH-PSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +    + +A     P++R+    L       G+T    + HGA+ D+    D+   +
Sbjct: 213 ELKTHCAMYLAADAFGPTNRHGSISLADAVDFAGVTWRG-AAHGAVADTLATVDLVQAI 270


>gi|92113107|ref|YP_573035.1| DNA polymerase III subunit epsilon [Chromohalobacter salexigens DSM
           3043]
 gi|91796197|gb|ABE58336.1| Exonuclease [Chromohalobacter salexigens DSM 3043]
          Length = 241

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 67/180 (37%), Gaps = 19/180 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTGLD +   I+ IG V            + ++    R  S  ++  H IT   +
Sbjct: 53  AMDMETTGLDEQRHAIVSIGLVPFDLRRIRMAQRRYWIVRPPRPLSERSITFHHITHTEI 112

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +  P    I  E  +         + H    +  F+NA ++    + +    +IDT+S+ 
Sbjct: 113 EQAPDLDEILDELLEAMA--GHVMVVHYRHIERTFLNAAVKARRGEGIH-FPVIDTMSLE 169

Query: 131 RRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            R H              P +   L     RYG+       H AL+D+   +++    + 
Sbjct: 170 ARLHRQPLWARFRRWMGRPPASIRLPDSRTRYGLPPY--QAHHALIDALATAELLQAQIA 227


>gi|218514224|ref|ZP_03511064.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3]
          Length = 312

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 64/169 (37%), Gaps = 21/169 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+ ++D IIEIGAV     D         ++  L    R    E  +L GI
Sbjct: 61  VVLDTETTGLNHRSDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIPREVTRLTGI 120

Query: 66  TDEFLKDKPSFSSIFS--EFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR 122
           TD  ++       +       D     +   IAHNA FD  F  A       K       
Sbjct: 121 TDAMVEG-----QVIDIRSLSDLIEPADL-IIAHNAGFDRPFCEAFSPLFTGKAWACSVS 174

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            ID    + R    ++  L  L  + G        H A+ D H L ++ 
Sbjct: 175 EID---WSARGFEGTK--LGYLVGQAG---YFHEGHRAVDDCHALLEIL 215


>gi|29833361|ref|NP_827995.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
           MA-4680]
 gi|29610484|dbj|BAC74530.1| putative DNA polymerase III epsilon subunit [Streptomyces
           avermitilis MA-4680]
          Length = 241

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 13/166 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    +     FD ETTG+D + DRI+    V         R  +  + P G      A 
Sbjct: 1   MTCWYEGPLAAFDTETTGVDVETDRIVSAAVVVQDAPGARPRVSRWLVNP-GVPVPAGAT 59

Query: 61  KLHGITDEFL-KDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKD 116
            +HG+TDE L ++    S +  E      EQ       +  NA FD+  ++ EL+R    
Sbjct: 60  AVHGLTDEHLQRNGRWPSPVMDEIARELGEQATAGRPLVVMNAPFDLTLLDRELRRHRAS 119

Query: 117 PLDPS------RIID--TLSIARRKHPSSRNDLNSLCKRYGITISH 154
            LD        R++D   L     ++   R  L  LC  Y + +  
Sbjct: 120 CLDHWFESAPLRVLDPRVLDKHLDRYRKGRRTLTDLCAHYDVALEG 165


>gi|229060993|ref|ZP_04198347.1| exonuclease [Bacillus cereus AH603]
 gi|228718362|gb|EEL69996.1| exonuclease [Bacillus cereus AH603]
          Length = 221

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 17/171 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N+ + ++ D ETTGL  + D+IIEI  ++L      +      + P       EA  +HG
Sbjct: 61  NRDQFVILDTETTGLTLR-DQIIEISVIDLAGKILLD----SLVKPTT-NIPAEAASIHG 114

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E + D PS+++I+ E  +         + +NA+FD+G I       N       +  
Sbjct: 115 ITNEMVHDAPSWTAIYKELREV--TVGKTLLIYNAEFDLGMIENTCI-ANNVEFKNFKST 171

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + +      S R   L+   +   +TI    KH A  D   + ++  ++
Sbjct: 172 CIMEMYVDYVDSKRWISLSDATE---LTI----KHRAAADCFAVLELLQQL 215


>gi|281424653|ref|ZP_06255566.1| exonuclease [Prevotella oris F0302]
 gi|281401241|gb|EFB32072.1| exonuclease [Prevotella oris F0302]
          Length = 162

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 6/149 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   +++   +  +G V + D    +R F   + P     +    ++HG+T  
Sbjct: 4   FAAIDFETA--NNERTSVCSVGLVVIRDGEIADR-FYSLIHPEPDYYTYWNTRVHGLTQA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P F  ++ +        +   +AHN  FD   + A   R  +          TL+
Sbjct: 61  DTNHAPIFPEVWRKVESLI--VDLPLVAHNKAFDESCLKAVF-RCYQMDYPDYSFYCTLA 117

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSK 157
            +RR  P   ++LN +  R G   ++   
Sbjct: 118 QSRRVWPQGHHNLNIIAARCGYDFTNHHH 146


>gi|16125770|ref|NP_420334.1| exonuclease [Caulobacter crescentus CB15]
 gi|13422904|gb|AAK23502.1| exonuclease [Caulobacter crescentus CB15]
          Length = 202

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 7/147 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET     +      IG +  ++  +  R    ++ P G + +   +  HGI 
Sbjct: 1   MKVIAIDFETA--SEQRASPCSIG-LAWIEDGEVARVEHHYIRPPGNRFAAFNMAFHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E + D   +  +          + A  +AHNA FD+  I    +  +  P      + T
Sbjct: 58  PEHVADADEWPDVLERIRPEL--EGALVLAHNASFDISVIRRTCEHYDV-PAPGFDYLCT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITI 152
           + +AR   P    + LN +C   G+  
Sbjct: 115 VQVARSVWPELPSHKLNVVCGHLGVDF 141


>gi|304311282|ref|YP_003810880.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma
           proteobacterium HdN1]
 gi|301797015|emb|CBL45228.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma
           proteobacterium HdN1]
          Length = 297

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 84/225 (37%), Gaps = 18/225 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M     +  +  D+ET   ++    I +IG VE  + +   R +  ++ P         +
Sbjct: 1   MPGTANISFVAIDVETA--NANMASICQIGLVEYSNGTPI-REWSSYVNPEDY-FDGMNV 56

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGIT+  +   P FS +          +    + H   FD   I+   ++     L  
Sbjct: 57  SVHGITEGTVIGAPVFSEVSEVLRSML--EGRVVVCH-THFDRAAISKAFRKSGATELS- 112

Query: 121 SRIIDTLSIARRKHP---SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            + +D+  +ARR           L+++ K  G T  H   H AL D+   +++   M+  
Sbjct: 113 CQWLDSAKVARRAWEVCAEKGYGLSAVSKMLGYTFQH---HDALEDAKASANI---MVRA 166

Query: 178 GSQINFGFKTNEDRFFKE-EKKTVPNISLLKRDKPLFTRITKEEL 221
             +          +  K    ++   +  ++R+      +T E L
Sbjct: 167 CEERGLDIVGWLTQVGKPIANRSSSMLPSVRREGNPQGELTGEIL 211


>gi|256377528|ref|YP_003101188.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
 gi|255921831|gb|ACU37342.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
          Length = 262

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 75/175 (42%), Gaps = 12/175 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +  D+ETT ++ + DRI+    V +    + +K +   + +L   G      A  +HGI+
Sbjct: 16  LALDLETTDVEPRRDRIVTASVVVITPGAEGAKPDVRVRTWLADPGVPIPASATAIHGIS 75

Query: 67  DEFLK-DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQR-INKDPLDPS 121
            E  + +      + +E      E    +    A NA FD+  ++AEL R   +      
Sbjct: 76  TEQARAEGRPVGEVVAEVEALLAELWTASTPLCAFNAPFDLTMLDAELLRHHGRSLRVSG 135

Query: 122 RIIDTLSIARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++D L + R   P    +  L ++C+ +G+ +     H +  D+   + +  K+
Sbjct: 136 PVVDPLCVDRALDPRRVGKRTLGAVCEHHGVRLEG--AHTSAGDALAAARLAWKL 188


>gi|218461184|ref|ZP_03501275.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli Kim 5]
          Length = 240

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 7/151 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           ++ I  D ET   + +      +G +  ++  +  R  +  + P   + S   + +HGI 
Sbjct: 45  LKTIAIDFETA--NEQRGSACSVG-LAWIEEGRVIRVEERLIRPREMRFSGMNIAIHGIR 101

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D P F  +  EF D  + + A  IAHNA FD     A L  + +        + +
Sbjct: 102 PEDVEDAPEFPEVMDEFHD--DFRGATMIAHNAAFDFSVWRASLD-LYRQSYPELTYLCS 158

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRS 156
           L +A+R  P    + LN + +  G+   H +
Sbjct: 159 LKMAQRIWPHFLSHRLNLIAEHLGLRFMHHN 189


>gi|241589662|ref|YP_002979687.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
           12D]
 gi|240868374|gb|ACS66033.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
           12D]
          Length = 330

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 20/176 (11%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D ETTGL +   D ++E+  ++  D  K    F+  + PN     P A  +HGIT
Sbjct: 159 RTVYLDTETTGLSAASGDELLELAVID--DAGKVL--FETLIRPNHLTEWPAAQVIHGIT 214

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +   PS S++            A  +  NA FD+GF+   L+     PL   +    
Sbjct: 215 PADVAGAPSLSAVLQGLAAAIEGAEA-LVIFNADFDLGFLPEPLR-----PLAKQKARCA 268

Query: 127 LSI---ARRKHPSSRND-----LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +        +    R       L       G     R  H A  D+  +  V+  +
Sbjct: 269 MQAFALWCGEWDDYRYSYRWQNLQQAAAIAGHVWEGR-AHRARADAFAVRTVWHWL 323


>gi|302541136|ref|ZP_07293478.1| putative DNA polymerase III epsilon subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458754|gb|EFL21847.1| putative DNA polymerase III epsilon subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 241

 Score = 98.4 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 15/167 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    +     FD ETTG+D ++DRI+    V            +  + P G      A 
Sbjct: 1   MSSWFEGPLAAFDTETTGIDVEHDRIVSAALVVQRGAGSLPEVRRWLVSP-GIPVPQAAT 59

Query: 61  KLHGITDEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           ++HG+TD  L+       P    +     +    +    +  NA FD+  ++ EL+R   
Sbjct: 60  EIHGLTDTHLQQHGRWPAPVMDEVARALAE-QTARGTPVVVMNAPFDLTLLDRELKRHRN 118

Query: 116 DPLDPSRIIDTLS--------IARRKHPSSRNDLNSLCKRYGITISH 154
             L     + +LS            ++   R  L  LC  YG+ ++ 
Sbjct: 119 ATLATYLSLRSLSVLDPRVLDKHLDRYRKGRRTLTDLCAHYGVELTG 165


>gi|299142345|ref|ZP_07035477.1| exonuclease [Prevotella oris C735]
 gi|298576067|gb|EFI47941.1| exonuclease [Prevotella oris C735]
          Length = 162

 Score = 98.4 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 6/149 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   +++   +  +G V + D    +R F   + P     +    ++HG+T  
Sbjct: 4   FAAIDFETA--NNERTSVCSVGLVVMRDGKIADR-FYSLIHPEPDYYTYWNTRVHGLTQA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P F  ++ +        N   +AHN  FD   + A   R  +          TL+
Sbjct: 61  DTNHAPIFPEVWCKVEPLI--VNLPLVAHNKAFDESCLKAVF-RCYQMDYPDYSFYCTLA 117

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSK 157
            +RR  P   ++L+ +  R G  +++   
Sbjct: 118 QSRRVWPQGHHNLDIIAARCGYDLTNHHH 146


>gi|153826601|ref|ZP_01979268.1| DNA polymerase III subunit epsilon [Vibrio cholerae MZO-2]
 gi|149739613|gb|EDM53833.1| DNA polymerase III subunit epsilon [Vibrio cholerae MZO-2]
          Length = 233

 Score = 98.4 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 62/177 (35%), Gaps = 18/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            + +L    +     ++  HGIT   
Sbjct: 45  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQARYWLVKPSQPLEEGSIVFHGITHSE 104

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   +   +  E  +         + H    +  F+      I  D      ++DTL I
Sbjct: 105 LQHAQAPEQVLKELLEAL--YGKIVVVHFRHIEREFLRQISLNI-WDEAIEFPVLDTLEI 161

Query: 130 ARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R+               P     L     RY +     S H AL D+   ++++  
Sbjct: 162 ERQLLDKQRSLWQRITRRPLPSIRLGQSRMRYHLPPY--SPHHALTDAIATAELFQA 216


>gi|297195480|ref|ZP_06912878.1| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297152819|gb|EFH32011.1| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 241

 Score = 98.4 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 63/165 (38%), Gaps = 19/165 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M          FD ETTG+D + DRI+    V         R  +  + P G    P A+
Sbjct: 1   MTHWYDGPLAAFDTETTGVDVEEDRIVSAAVVVQDSPGGRPRITRWLVNP-GVPVPPGAI 59

Query: 61  KLHGITDEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           ++HG+TD+ L+       P    I     +         +  NA FD+  ++ EL+R   
Sbjct: 60  EVHGLTDDHLQRNGRWPAPVMEEIARSLAEQCAA-GRPLVVMNAPFDLTLLDRELRRHRA 118

Query: 116 DPLDPSRIID----------TLSIARRKHPSSRNDLNSLCKRYGI 150
             L  SR +D           L     ++   R  L  LC +Y +
Sbjct: 119 SSL--SRYLDRSPLCVLDPRVLDKHLDRYRKGRRTLTDLCAQYEV 161


>gi|153212279|ref|ZP_01948067.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           1587]
 gi|124116657|gb|EAY35477.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           1587]
          Length = 236

 Score = 98.4 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 62/177 (35%), Gaps = 18/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            + +L    +     ++  HGIT   
Sbjct: 48  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQARYWLVKPSQPLEEGSIVFHGITHSE 107

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   +   +  E  +         + H    +  F+      I  D      ++DTL I
Sbjct: 108 LQHAQAPEQVLKELLEAL--YGKIVVVHFRHIEREFLRQISLNI-WDEAIEFPVLDTLEI 164

Query: 130 ARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R+               P     L     RY +     S H AL D+   ++++  
Sbjct: 165 ERQLLDKQRSLWQRIARRPLPSIRLGQSRMRYHLPPY--SPHHALTDAIATAELFQA 219


>gi|328885949|emb|CCA59188.1| putative DNA polymerase III epsilon subunit [Streptomyces
           venezuelae ATCC 10712]
          Length = 240

 Score = 98.4 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 15/165 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    + FD+ETTG D    RI+    V   D     +    +L   G +   +A  
Sbjct: 1   MAWHGEPLVGFDLETTGTDPLEARIVTASIVGFHDGRVVRQR--DWLADPGIRIPEQASA 58

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGI+ E    +      +  E  +       Q    +A+NA FD+  + AEL+R     
Sbjct: 59  IHGISSERAAAEGRPVREVADEIAETLTGYWNQGVPVVAYNASFDLTLLAAELRRHGLPS 118

Query: 118 LDP-------SRIID--TLSIARRKHPSSRNDLNSLCKRYGITIS 153
           L+          ++D  T+  A  ++   + +L ++C  YG+ + 
Sbjct: 119 LEERLGGTAIGPVVDPYTIDRAVDRYRRGKRNLEAVCGEYGVVLE 163


>gi|54303407|ref|YP_133400.1| putative DNA polymerase III [Photobacterium profundum SS9]
 gi|46916837|emb|CAG23600.1| putative DNA polymerase III [Photobacterium profundum SS9]
          Length = 236

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 10/173 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            +  +  D ETTGL+ + D+I+ IG V L        + +     +G     E+ +++ I
Sbjct: 48  DLNFVAIDFETTGLNCQQDKILSIGVVNLTTDMIELASSEEIYIRHGEFIKAESAQINEI 107

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + L       +      +    Q    +AH A  +  FI + L+   +    P   ID
Sbjct: 108 TPKQLHKGVDIDTAIDWLLERI--QGKIVLAHCANIEKQFIESYLKDTYQLNTFPCYFID 165

Query: 126 TLS------IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           TL        A + +  +   L+ L + + +   +   H A  D+   +++++
Sbjct: 166 TLQLEKHHSYAGKSNQHTSYQLDDLRQYHNLPAYY--SHSAASDAVACAELFL 216


>gi|187932764|ref|YP_001885887.1| exonuclease [Clostridium botulinum B str. Eklund 17B]
 gi|187720917|gb|ACD22138.1| putative exonuclease [Clostridium botulinum B str. Eklund 17B]
          Length = 974

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 12/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH-GITDE 68
           I  DIETTGLD  N  IIEIGAV++ + + T  T++V + P  R       KL  G+ +E
Sbjct: 12  IYLDIETTGLDENNCEIIEIGAVKIKNSNVT--TYEVLIRPK-RNVPISIYKLCQGLKEE 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +      I +E   F   ++   I HN  F+  F++  +  I  +  D   +   L 
Sbjct: 69  ELMNSKYLEDIKNELLVFL--EDLPLICHNGGFERKFLSCHIPEIKNEIFDSMELSAILE 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R+++     +L+SL K   I +     H  L DS     V   ++
Sbjct: 127 PWRKEY-----NLDSLIKSITI-LDKDEFHRGLEDSIDTLKVVNSLL 167


>gi|298346657|ref|YP_003719344.1| DNA polymerase III subunit epsilon [Mobiluncus curtisii ATCC 43063]
 gi|298236718|gb|ADI67850.1| DNA polymerase III subunit epsilon [Mobiluncus curtisii ATCC 43063]
          Length = 240

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 18/176 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+ +  DRI  +  +  ++   T+      + P G    P A +++G+TDE+L+
Sbjct: 19  FDTETTGVFTSRDRIATVSLIRRING--TDSPRYWIINP-GVPMPPAAGRVNGLTDEYLQ 75

Query: 72  D-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP------ 120
                 +     +     +    +    +  N  FD   + AEL R N   L        
Sbjct: 76  ANGVDPRVGLEEVAGIVAETMR-RGVPVVGFNVTFDFAILEAELARHNLPTLRQRLEGTV 134

Query: 121 SRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             I+D L + R   ++   + +L S+C  Y + +     H A  D     D+   M
Sbjct: 135 GPIVDPLVLDRILDRYRKGKRNLASVCTAYDLPLR-EDFHNAQADVSATLDLLGAM 189


>gi|187932518|ref|YP_001886209.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           B str. Eklund 17B]
 gi|187720671|gb|ACD21892.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           B str. Eklund 17B]
          Length = 243

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 92/229 (40%), Gaps = 20/229 (8%)

Query: 7   MRKIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KN 55
           M  IV+D+E    + +             II+IGAV+L +  +   TF   + P    + 
Sbjct: 1   MNYIVYDLE---FNHQYSKDNKVSNLTFEIIQIGAVKLNNKLEIVSTFNRLIKPTVHTEI 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P    L  IT E +  +  FS ++++F  F   +           D+  +   ++  N 
Sbjct: 58  HPFIKDLTQITTEMVNSEKHFSDVYNDFIKFIGNKEFTVCIW-GTSDIKELLKNVKFHNL 116

Query: 116 DPLDP-SRIIDTLSIARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +D   + ID  ++A +   + +     L +  + + + I  +  H A  D++  + ++
Sbjct: 117 KEIDDLRKYIDVQNLASKYIKTPKGTKVGLKTAIEFFNLPIE-KEFHDAFNDAYYTAQIF 175

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
            K+     + +        R  + ++K      L + +K    ++++EE
Sbjct: 176 KKLYTSKIKSSIYNNPYSKRISEPKQKVDTKGLLRQFEKMYNRKLSEEE 224


>gi|302561692|ref|ZP_07314034.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302479310|gb|EFL42403.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 241

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 13/166 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    +     FD ETTG+D +NDRI+    V         R  +  + P G      A 
Sbjct: 1   MTYWYEGPLAAFDTETTGVDVENDRIVSAALVVQDASGARPRVTRWLVNP-GVPVPAAAT 59

Query: 61  KLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116
           ++HG+T+E L ++    + +  E  +   EQ A     +  NA FD+  ++ EL+R    
Sbjct: 60  EVHGLTEEHLQRNGRWPAPVMYEMAEALAEQAAVGRPLVVMNAPFDLTLLDRELRRHRAS 119

Query: 117 PL------DPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISH 154
            L       P R++D   L     ++   R  L  LC  YG+ +  
Sbjct: 120 SLGRWLERSPLRVLDPWVLDKHLDRYRKGRRTLTDLCAHYGVPLEG 165


>gi|189423312|ref|YP_001950489.1| exonuclease RNase T and DNA polymerase III [Geobacter lovleyi SZ]
 gi|189419571|gb|ACD93969.1| Exonuclease RNase T and DNA polymerase III [Geobacter lovleyi SZ]
          Length = 302

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 59/213 (27%), Positives = 90/213 (42%), Gaps = 22/213 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +  D ETTGL+   D+IIE+G V            K    +  F  P G   S E   + 
Sbjct: 45  LCLDTETTGLNPACDKIIELGIVAFQYDPLTSGIIKIIGRYAGFEDP-GIPLSAETTAIT 103

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITDE +  + SF     +      +Q +  IAHNA FD  F+ A     +K P   S  
Sbjct: 104 GITDEMVSGQ-SFDDA--QVCR-LADQASLVIAHNAAFDRKFVEARFPVFSKVPWGCSM- 158

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQIN 182
             T    + +  S+R  L  L  ++G  I   + H AL D+  L  + ++ + V G+ I 
Sbjct: 159 --TQVDWQAERISTR-VLEYLLFKFGWFI---NAHRALDDAEGLLGILLESLPVSGTPI- 211

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
             FK   +R+ +   K     +  ++   L  R
Sbjct: 212 --FKVLLERYDEVSAKVCAVGAPFEKKDVLKQR 242


>gi|315656881|ref|ZP_07909768.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492836|gb|EFU82440.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 240

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 18/176 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+ +  DRI  +  +  ++   T+      + P G    P A +++G+TDE+L+
Sbjct: 19  FDTETTGVFTSRDRIATVSLIRRING--TDSPRYWIINP-GVPMPPAAGRVNGLTDEYLQ 75

Query: 72  D-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP------ 120
                 +     +     +    +    +  N  FD   + AEL R N   L        
Sbjct: 76  ANGVDPRVGLEEVAGIIEETMR-RGVPVVGFNVTFDFAILEAELARHNLPTLRQRLEGSV 134

Query: 121 SRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             I+D L + R   ++   + +L S+C  Y + +     H A  D     D+   M
Sbjct: 135 GPIVDPLVLDRILDRYRKGKRNLASVCTAYDLPLR-EDFHNAQADVSATLDLLGAM 189


>gi|227503316|ref|ZP_03933365.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49725]
 gi|227075819|gb|EEI13782.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49725]
          Length = 470

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 23/181 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEA-LKLHGI 65
            +  D+ET   +     I +IGAV   D  +T    Q +LC  P G ++  E  + +HGI
Sbjct: 126 FVAVDVETA--NDNWGSICQIGAVRYRDGGETAS--QSWLCTPPPGLEHFAEINISIHGI 181

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   ++    F++  +E +DF        +AHN +FD   + + L     D +    +  
Sbjct: 182 TAADVEGAMPFATAAAELFDFIGSD--VIVAHNVQFDSSALRSGLLAAGAD-VPTVPLAC 238

Query: 126 TLSIARRKHPSS-----RNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +L+++R            + L ++ K   G + +H   H A  D+         ++ G +
Sbjct: 239 SLALSRDASRQGVISVANHKLPTVVKHLGGASFTH---HDATEDARAAG----TIITGLA 291

Query: 180 Q 180
           Q
Sbjct: 292 Q 292


>gi|158317483|ref|YP_001509991.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec]
 gi|158112888|gb|ABW15085.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec]
          Length = 237

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 70/178 (39%), Gaps = 13/178 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    +    V D ETTG D + DR +++  +++      N+  Q  +   G      A 
Sbjct: 1   MAWWQR-PMAVLDFETTGTDVETDRAVQVALLKVGPTGVLNQLCQ--IIDPGVDVPEAAA 57

Query: 61  KLHGITDE-FLKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           ++HGIT E   ++    + +        +         +  N+ FD+  ++ EL+R +  
Sbjct: 58  RIHGITTERARREGRDPAEVLGRVGQALEGVWRDGIPVVIMNSSFDLTLLDRELRRHHGR 117

Query: 117 PLDPSRI--IDTLSIARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            L  + +  +D + I R   P    +  L +L   Y +       H AL D    + +
Sbjct: 118 SLAEADMLVLDPMVIDRELDPRRPGKRTLTALATHYRVR--QEGAHDALADCLTTARI 173


>gi|320007769|gb|ADW02619.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           flavogriseus ATCC 33331]
          Length = 241

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 15/156 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+ETTG D + DRI+    V L      +      L P G     +A  +HGI+ E 
Sbjct: 9   LAFDLETTGTDVETDRIVTAAVVRLEADGSVSAELTWLLDP-GVAIPEQASAIHGISTER 67

Query: 70  LKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD----- 119
            ++       +   I     D         +  NA++D+  ++ E +R   D +      
Sbjct: 68  AREHGLPAAAAIEEITRAVADGLRS-GTPLVVMNARYDLSLLDRECRRYGVDSVSERLGD 126

Query: 120 -PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
            PS +ID L I +   K+   +  L++LC  YG+ +
Sbjct: 127 APSPVIDPLVIDKHVDKYRKGKRALHALCAHYGVRL 162


>gi|258546253|ref|ZP_05706487.1| DNA polymerase III, epsilon subunit [Cardiobacterium hominis ATCC
           15826]
 gi|258518519|gb|EEV87378.1| DNA polymerase III, epsilon subunit [Cardiobacterium hominis ATCC
           15826]
          Length = 141

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 10/143 (6%)

Query: 99  AKFDVGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHR 155
             FD  F N E +         D  R++DTL +AR+K    SR  L+SLCK YGI  S+R
Sbjct: 1   MPFDQSFFNREFKLAGLKYKLEDRFRLLDTLDLARKKISGISRFSLDSLCKYYGIDNSNR 60

Query: 156 SKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP---- 211
           + HGALLDS LL++VY+K+     Q  F F   +     +  +TV   + +         
Sbjct: 61  TLHGALLDSQLLAEVYLKLTT--EQSGFDFAAPDATPAPQPVETVSVAAPVPAAPSQPGA 118

Query: 212 -LFTRITKEELDEHDKTIQTLGK 233
            L   +  EE   H   ++ L  
Sbjct: 119 WLAIAVPDEEAAAHRAIMEKLRG 141


>gi|120536881|ref|YP_956939.1| exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
 gi|120326715|gb|ABM21024.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
          Length = 291

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 19/174 (10%)

Query: 2   IRKNKMRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ-----VFLCPNGRKN 55
           +  + ++ +V  D ETTG  + +D+IIE+G  +      T           F    G   
Sbjct: 39  VEVDNLQAVVWLDCETTGFQAGHDKIIELGLTKGYVDPITGELISLVASVSFYEDPGFPL 98

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
                ++ GITDE +  + +   +  +  ++F + +   +AHNA FD  F  +       
Sbjct: 99  PEIITQITGITDEMVSGR-TIDGV--QVREWFTD-DPIVVAHNASFDRPFFESRF----- 149

Query: 116 DPLDPSRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             LD  R   ++     +++      L  L  R G        H A +D+   +
Sbjct: 150 PMLDQLRWACSMKDIPWQEYGFESTKLEYLLYRLGYFYEG---HRASIDAIATA 200


>gi|332715841|ref|YP_004443307.1| DNA polymerase III subunit epsilon [Agrobacterium sp. H13-3]
 gi|325062526|gb|ADY66216.1| DNA polymerase III subunit epsilon [Agrobacterium sp. H13-3]
          Length = 326

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 65/178 (36%), Gaps = 15/178 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+ + D IIEIG +     D         V+  L   G     E  +L GI
Sbjct: 74  VILDTETTGLNHRTDEIIEIGVITFTFDDQGTIGDVTGVYGGLRQPGTSIPEEITRLTGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +  + +               +   IAHNA FD  F  A            S  + 
Sbjct: 134 TDEMVAGQ-TID--IDRLTSLVEGADL-IIAHNAGFDRPFCEAFSPIFRNKAWACS--VS 187

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            +  + R    S+     L    G +      H A+ D   L +V  ++  G S   F
Sbjct: 188 EVDWSGRGFEGSK-----LAYLIGQSGYFHDGHRAVDDCFALLEVLEQVRAGQSGTPF 240


>gi|254712763|ref|ZP_05174574.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|254715832|ref|ZP_05177643.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261217593|ref|ZP_05931874.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1]
 gi|261320470|ref|ZP_05959667.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M644/93/1]
 gi|260922682|gb|EEX89250.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1]
 gi|261293160|gb|EEX96656.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M644/93/1]
          Length = 329

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 86/240 (35%), Gaps = 34/240 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGL+   + IIEIGAV     D          F  L    +    E   + GI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAE---ITGI 130

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRII 124
           TDE +K +    +I  +  D    +    IAHNA FD  F+    +   NK      + I
Sbjct: 131 TDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLERLSIAFANKPWACSVKEI 186

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV----------YIKM 174
           D      R    ++  L  L    G +    + H A  D   L  V          + ++
Sbjct: 187 D---WTARGFEGTK--LGYLI---GQSGYFHNGHRAEDDCQALLAVLKGKSGKTTPFAEL 238

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTIQT 230
           +    +           F  ++               R K  +T + ++EL+   + ++T
Sbjct: 239 LKASQRARMRIYAENSPFEMKDHLKARGYRWSDGTDGRPKSWWTEVGEDELEAELEYLRT 298


>gi|323358024|ref|YP_004224420.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
 gi|323274395|dbj|BAJ74540.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
          Length = 405

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 9/152 (5%)

Query: 9   KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTGL   K+DRI+E+  V +         ++  + P        A ++HGI+ 
Sbjct: 5   FAVIDLETTGLFPQKHDRIVEVAIVHVSPAGVVEGVWETLVNPMR---DMGAQRIHGISA 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                 P FS++          +    +AHNA FD  F+   ++       D +  + T+
Sbjct: 62  AAAARAPEFSALAPSIASLL--RGRVPVAHNASFDARFLAHSMEHAGLACPDLAYWMCTM 119

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
            +A          L        I  + ++ H 
Sbjct: 120 QLAG-TFLQGNRSLADCSAA--IGYAMQNAHR 148


>gi|251780665|ref|ZP_04823585.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243084980|gb|EES50870.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 243

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 20/229 (8%)

Query: 7   MRKIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KN 55
           M  IV+D+E    + +             +I+IGAV+L    +   TF   + P    + 
Sbjct: 1   MNYIVYDLE---FNHQYSKDDKASNITFEVIQIGAVKLNSNLEVVSTFNRLIKPTVHTEI 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P    L  IT E +  +  FS ++ +F +F   +           D+  +   ++  N 
Sbjct: 58  HPFIKDLTQITTEMVNSEKYFSDVYDDFIEFIGNKEFTVCIW-GTSDIKELLKNVKFHNL 116

Query: 116 DPLDP-SRIIDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           + +D   + ID  ++A +       ++  L +  + + + I  +  H A  D+H  + ++
Sbjct: 117 EEIDDLRKYIDVQNLASKYIKTQKGTKVGLKTAIEFFNLPIE-KEFHDAFNDAHYTAQIF 175

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
            K+     + +        R  + + K        + +K    ++++EE
Sbjct: 176 KKLYTSKVKSSTYNNPYSKRISEPKSKVDTKGLFRQFEKMYSKKLSEEE 224


>gi|262273303|ref|ZP_06051118.1| putative exonuclease [Grimontia hollisae CIP 101886]
 gi|262222676|gb|EEY73986.1| putative exonuclease [Grimontia hollisae CIP 101886]
          Length = 198

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 68/180 (37%), Gaps = 24/180 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ETTGL  ++  I E  A++       N      + P+ +    EA  +HGIT++ 
Sbjct: 26  ITIDTETTGL-GEDAEICEFAAIDGRGNVLIN----TLIKPS-KPIPAEATAIHGITNDM 79

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV------GFINAELQRINKDPLDPSRI 123
           ++  P++  +          +      +NA++D+        I+    R   D L+ S  
Sbjct: 80  VETAPTWLEVEGMIAGLLVSRPVAI--YNAEYDIRVIWQTSMISHGKDRAVPDELERSIN 137

Query: 124 IDTLSIARRKHPSS---------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              + +   ++             + L +     G+T+   + H AL D  +   +   M
Sbjct: 138 ATCIMLEYAEYRGEWCDSRHQYRWHKLTAAAAHEGVTVE-ENAHRALADCRMTLGLIKAM 196


>gi|228471624|ref|ZP_04056398.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC
           33624]
 gi|228277043|gb|EEK15729.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC
           33624]
          Length = 1484

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 94/255 (36%), Gaps = 36/255 (14%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL    +          R ++I      +           + P+G     +
Sbjct: 2   YLIFDTETTGLPRNYNAPISDSENWPRAVQIAWQLHDEKGALLEHKDFLIIPDGYTIPYD 61

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           A ++HGI+ E   +   S   +F EF    ++     +  N  FD+  + AE  R     
Sbjct: 62  AERIHGISTELATEQGVSIHKVFEEFEKALSKTQ-YIVGQNIGFDIHIMGAEFYRYGVST 120

Query: 118 -LDPSRIIDT---LSIARRKHPSSR------NDLNSLCKR-YGITISHRSKHGALLDSHL 166
            LD   I+DT   L+    K P  R       +L  L +  +G   +    H A  D   
Sbjct: 121 VLDKLPILDTCSELTAELCKIPGGRAGKFKYPNLTELHEFLFGTPFA--EAHNATADVEA 178

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP-------NISLLKRDKPLFTR---- 215
            +  + +++      +    + E     +E    P       +I+L    + L ++    
Sbjct: 179 TARCFFELLRRNEGFSSSAISPEAILLIQENHPSPISLWGLKHINLKSASEKLKSKEQRG 238

Query: 216 ITKEELDEHDKTIQT 230
           ++  E+ E+   +Q+
Sbjct: 239 LSDSEISENLALLQS 253


>gi|197335542|ref|YP_002157176.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11]
 gi|197317032|gb|ACH66479.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11]
          Length = 213

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 79/174 (45%), Gaps = 11/174 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETT L+  +  ++ I A+++ +    T++T  + L P    NS +++K+H +  +
Sbjct: 31  VSIDCETTSLNPNHAELVSIAAIKIKNNRVLTSQTIHLKLTPPQSLNS-DSIKIHQLRHQ 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L    S     ++  +F   +    + ++ ++D   ++    R    PL  S I  +  
Sbjct: 90  DLHHGLSEQQAMTQLLEFIGNR--PIVGYHIRYDKKILDRACLRHFSHPLPNSLIEVSHI 147

Query: 129 IA---RRKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 R  P++  DL   ++ K  G+  + R  H AL D+   + +Y+++  G
Sbjct: 148 YHNKLERLLPNAYYDLSIEAISKHLGLPQTER--HDALEDAIAAALIYVRLTHG 199


>gi|255325307|ref|ZP_05366413.1| DNA polymerase III epsilon subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255297872|gb|EET77183.1| DNA polymerase III epsilon subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 443

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 72/174 (41%), Gaps = 17/174 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA---LKLHGI 65
               D+ET   +     I +IGAV   +  +T+     +LC         A   + +HGI
Sbjct: 100 FTAVDVETA--NDNWGSICQIGAVRFREGQETDSR--SWLCTPPPGIEHFADINVSIHGI 155

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + +K  P+F  +  E +DF        +AHNA+FD   + + L     + +    +  
Sbjct: 156 TADDVKGAPAFVEVSKELFDFLG--GDVLVAHNAQFDSTALRSALLTAGAE-VPTVPLAC 212

Query: 126 TLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +L+++R     +      + L ++     ++    S H A  D+    ++  ++
Sbjct: 213 SLALSRDASKAKVISVRNHKLPTVAAH--LSAPDFSHHDATEDARAAGEIIARL 264


>gi|110803333|ref|YP_699430.1| exonuclease family protein [Clostridium perfringens SM101]
 gi|110683834|gb|ABG87204.1| exonuclease family protein [Clostridium perfringens SM101]
          Length = 300

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 22/192 (11%)

Query: 7   MRKIVFDIE------TTGLDSK-------------NDRIIEIGAVELLDYSKTNRTFQVF 47
           M  ++ D+E       T                   + IIEIGA++L  + +    F+ +
Sbjct: 1   MGYVIIDLEFNNMQNITKFYPNIYNEQKDLKELDSYNEIIEIGAIKLNKFMQEVDEFKTY 60

Query: 48  LCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           + P+  K  +P+ + + GIT++ LKD   F        DF  E +    +      V  +
Sbjct: 61  IKPSVFKVLNPKIIDITGITEDHLKDGIKFEDAMDNLKDFIGEDD-ILCSWATDDIVHIV 119

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSH 165
           N       K+     + ID      +     ++  L    +   I I     H AL D+ 
Sbjct: 120 NNAKYHSYKNISWIKKYIDIQKYCTKILAHKKSLSLKHALEELKIKIDKSKLHDALNDAV 179

Query: 166 LLSDVYIKMMVG 177
             ++V+ ++  G
Sbjct: 180 YTAEVFKRLYNG 191


>gi|163839979|ref|YP_001624384.1| DNA polymerase III subunit epsilon [Renibacterium salmoninarum ATCC
           33209]
 gi|162953455|gb|ABY22970.1| DNA polymerase III, epsilon chain [Renibacterium salmoninarum ATCC
           33209]
          Length = 228

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 74/193 (38%), Gaps = 12/193 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M       +  FD+ETTG D +  R++    V +   +    +   +L   G +      
Sbjct: 1   MNTWLDGNRAAFDVETTGRDPRQARLVSASIVLVDANNDVVES-HEWLADPGVEIPEAVT 59

Query: 61  KLHGITDEFLK-DKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKD 116
            +HGI+    + +     ++ +E               +A NA +D   + AE  RI   
Sbjct: 60  LIHGISTARARAEGAPIGAVVTEVAQVLRSYFAAGTPVMAFNAPYDFTVLAAECARIGVS 119

Query: 117 PLDPSRIIDTLSIARRK--HPSSRNDLNSLCKRYGITI--SHRSKHGALLD---SHLLSD 169
                 +ID   + ++       +  L ++C+ Y I +  +H S   AL     +  L+ 
Sbjct: 120 APTAFPVIDPFVLDKQVDGFRRGKRTLVAICEHYNIPLIDAHTSAADALATIKLAEALAR 179

Query: 170 VYIKMMVGGSQIN 182
            + ++ +   +++
Sbjct: 180 RFPELSIPAEELH 192


>gi|239939981|ref|ZP_04691918.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
 gi|239986465|ref|ZP_04707129.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           11379]
 gi|291443411|ref|ZP_06582801.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
 gi|291346358|gb|EFE73262.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 241

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 15/165 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+   +     FD ETTG+D + DRI+    V         R  +  + P G    P A 
Sbjct: 1   MMHWFEGPLAAFDTETTGVDVERDRIVSAALVAQDTAGGRVRVTRWLVNP-GIPVPPGAT 59

Query: 61  KLHGITDEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           ++HG+ D+ L+       P    I     +         +  NA FD+  ++ EL+R   
Sbjct: 60  EIHGLADDHLQRNGRWPAPVMDEIARALAESCAT-GRPLVVMNAPFDLTLLDRELKRHRA 118

Query: 116 DPLD------PSRIID--TLSIARRKHPSSRNDLNSLCKRYGITI 152
             L       P R++D   L     ++   R  L  LC  Y + +
Sbjct: 119 SSLARYLDGVPMRVVDPRVLDKHLDRYRKGRRTLTDLCASYEVVL 163


>gi|86358436|ref|YP_470328.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli CFN 42]
 gi|86282538|gb|ABC91601.1| probable DNA polymerase III, epsilon subunit protein [Rhizobium
           etli CFN 42]
          Length = 196

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 7/151 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      +G +  ++  +  R  +  + P   + S   + +HGI 
Sbjct: 1   MKTIAIDFETA--NEQRGSACSVG-LAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D P F  +  EF +  +   A  IAHNA FD     A L  + +        + +
Sbjct: 58  PEHVEDAPEFPEVMDEFHE--DISGATMIAHNAAFDFSVWRASLD-LYRQSYPELTYLCS 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRS 156
           L +A+R  P    + LN + +  G+   H +
Sbjct: 115 LKMAQRIWPHFLSHRLNLIAEHLGLRFMHHN 145


>gi|241889971|ref|ZP_04777269.1| ATP-dependent helicase DinG homolog [Gemella haemolysans ATCC
           10379]
 gi|241863593|gb|EER67977.1| ATP-dependent helicase DinG homolog [Gemella haemolysans ATCC
           10379]
          Length = 616

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 82/213 (38%), Gaps = 10/213 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V DIE T     +  II+  A +L +  +   +   ++ P  ++ S    +L GI++E
Sbjct: 5   FCVVDIELT----DDKEIIQFSATKLDENFREILSINYYIQPK-KQVSTFVTELTGISNE 59

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L DKP F  +  E +++   +    + H    D   +      +          +DT+ 
Sbjct: 60  MLHDKPFFEDVAHELYNYI--KGDILVCHGLPSDYVILKKRFHDVGI-LYKAKLSLDTVE 116

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           ++R   PS     L+ L    G+  +    H A +D  +   +  ++    S+IN     
Sbjct: 117 LSRLFLPSQTSYRLSDLSNSLGL-YTGDQYHNAAIDVKVTVKLLKEIARKISKINTDNYK 175

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
             +   ++   ++   +   R++        +E
Sbjct: 176 KIENLLEKIDLSMYKFARFCRNRAKSVEFNSDE 208


>gi|187927567|ref|YP_001898054.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12J]
 gi|187724457|gb|ACD25622.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
           12J]
          Length = 216

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 17/178 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGLD + D II IGAV ++     T++  ++ + P G +  PE++ +H + +
Sbjct: 38  WVALDCETTGLDVRTDEIISIGAVRIVGNRILTSQRLELLIRPQG-EMRPESICVHRLRN 96

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRIIDT 126
             L    S          F   +    + +  +FDV  +N   +  +      P   +  
Sbjct: 97  RDLDSGVSIEQAVHTLLHFIGSR--PLVGYYLEFDVAMLNRVVVPMLGIGLPQPKIEVSA 154

Query: 127 LSIARRKHPSSRND------LN----SLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L    +              L+    ++ K   +       H AL D+ + +  ++K+
Sbjct: 155 LYYDHQFALLPPYRQQGDPDLDLRFATVMKELDLPTWD--AHDALNDAVMAALAFVKL 210


>gi|86360676|ref|YP_472564.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42]
 gi|86284778|gb|ABC93837.1| probable polymerase epsilon subunit protein [Rhizobium etli CFN 42]
          Length = 326

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+ ++D IIEIGAV     D         ++  L    R   P+  +L GI
Sbjct: 75  VILDTETTGLNHRSDEIIEIGAVAFTFNDDGAVGDVVGIYGGLQQPSRPIPPDITRLTGI 134

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRII 124
           TD  ++ + +               +   IAHNA FD  F  A       K        I
Sbjct: 135 TDVMVEGQ-TID--MPSLNALIEPADL-IIAHNAGFDRPFCEAFSPIFAGKAWACSVSEI 190

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           D    + R    ++  L  L  + G        H A+ D H L ++ 
Sbjct: 191 D---WSARGFEGTK--LGYLVGQAG---YFHGGHRAVDDCHALLEIL 229


>gi|222081448|ref|YP_002540811.1| DNA polymerase III subunit epsilon [Agrobacterium radiobacter K84]
 gi|221726127|gb|ACM29216.1| polymerase epsilon subunit protein [Agrobacterium radiobacter K84]
          Length = 340

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 61/166 (36%), Gaps = 15/166 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+ +ND IIEIG V     D+        V+  L   G    PE  +L GI
Sbjct: 89  VILDTETTGLNHRNDEIIEIGLVAFTFDDFGHIGDVIGVYGGLQQPGTPIPPEITRLTGI 148

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE ++ +        +        +   IAHNA FD  F     +  +      +    
Sbjct: 149 TDEMVEGQ-MID--MQQVRRMVAPADLV-IAHNAGFDRPF----CEAFSNVFATKAWACS 200

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              I           L  L  + G        H A+ D   L +V 
Sbjct: 201 VSEIDWNARGFEGTKLGYLIGQAG---YFHEGHRAIDDCFALLEVL 243


>gi|297155821|gb|ADI05533.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
           BCW-1]
          Length = 241

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 15/167 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    +     FD ETTG+D + DRI+    V            +  + P G      A 
Sbjct: 1   MPSWFEGPLAAFDTETTGIDVEQDRIVSAALVVQRGAGSLPEVRRWLVSP-GIPVPEAAS 59

Query: 61  KLHGITDEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            +HG+TD  L+       P    +     +    +    +  NA FD+  ++ EL+R   
Sbjct: 60  AIHGLTDSHLQRHGRWPAPVVDEVARALAE-QAARGTPVVVMNAPFDLTLLDRELKRHRN 118

Query: 116 DPLDPSRIIDTLS--------IARRKHPSSRNDLNSLCKRYGITISH 154
             L     + +L+            ++   R  L  LC  YG+ ++ 
Sbjct: 119 ASLSTYVSLRSLTVLDPRVLDKHLDRYRKGRRTLTDLCAHYGVELTG 165


>gi|72161306|ref|YP_288963.1| DNA polymerase III subunit epsilon [Thermobifida fusca YX]
 gi|71915038|gb|AAZ54940.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX]
          Length = 210

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 11/151 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHGITDE 68
             D ET   +     +  +G V + D    +R +   + P    +  E   + +HGIT E
Sbjct: 7   AIDFETA--NRNQGSVCAVGLVRVTDGRIVDR-YTTLVRPPAPVDHFEQDNIAVHGITPE 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D P++  + +   +F     + ++AHNA FD+G I A        P        +L 
Sbjct: 64  HVADAPAWPQVHTTILEF--AAGSPFVAHNAVFDMGVIRAACAHAGL-PEPSLHYACSLD 120

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKH 158
           IARR  P+ RN  L ++C+  G  +  R  H
Sbjct: 121 IARRTWPALRNHRLPTVCRTIGYDL--RRHH 149


>gi|300778928|ref|ZP_07088786.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
 gi|300504438|gb|EFK35578.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
          Length = 1555

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 72/206 (34%), Gaps = 24/206 (11%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL    +          R+++I      D           + P G      
Sbjct: 2   YLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDDDGNLIENQDYIIKPEGYDIPFN 61

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KD 116
           A ++HGIT +   ++      I  EF     E+      HN +FD   + AE  R N KD
Sbjct: 62  AARIHGITTKIANEEGRDLQEILEEFSKVL-EKVRVVSGHNVEFDYNIVGAEFYRKNLKD 120

Query: 117 PLDPSRIIDTLSIARRKH--------PSSRNDLNSLCKR-YGITISHRSKHGALLDSHLL 167
            L      DT+ +                   L  L ++ YG        H A  D +  
Sbjct: 121 NLQEKPKADTMILGADFCQLGGGRGGRFKPPKLEELYEKLYGSKFD--EAHNAAADVNAT 178

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFF 193
           +  + +M+  G       K +ED+  
Sbjct: 179 ARAFFEMVRIGVVPAETLKISEDQLA 204


>gi|58616403|ref|YP_195533.1| DNA polymerase III subunit epsilon [Azoarcus sp. EbN1]
 gi|56315865|emb|CAI10509.1| putative exonuclease [Aromatoleum aromaticum EbN1]
          Length = 342

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 68/185 (36%), Gaps = 17/185 (9%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHGITD 67
           D+ETTGL   +D+II+IG V       + +  +V          GR    E  +L GI D
Sbjct: 47  DVETTGLKKDSDKIIDIGLVLAEFDRVSGQVLRVLERYSGFEDPGRPIPEEITRLTGIRD 106

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + ++ +F              +   +AHNA FD GF+      +            + 
Sbjct: 107 EDVLEQ-TFDDA--RVEALIARADLV-VAHNAPFDRGFL-----ELRFPSFQKKWWACSQ 157

Query: 128 SIA-RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
             A   +  +    L  L   + I       H AL+D+ +   +  +M  GG  I     
Sbjct: 158 REAPWSQMMTGSTKLEWLA--FQIGGCFYEAHRALVDAEVTLFILAQMGPGGRPILSHLL 215

Query: 187 TNEDR 191
               R
Sbjct: 216 EVSGR 220


>gi|115375897|ref|ZP_01463146.1| DNA polymerase III PolC-type, putative [Stigmatella aurantiaca
           DW4/3-1]
 gi|310819816|ref|YP_003952174.1| exonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|115367075|gb|EAU66061.1| DNA polymerase III PolC-type, putative [Stigmatella aurantiaca
           DW4/3-1]
 gi|309392888|gb|ADO70347.1| Exonuclease [Stigmatella aurantiaca DW4/3-1]
          Length = 219

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 12/172 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNG-RKNSPEALKLHGITD 67
              D+ETTGLD+    ++E+  + +   S K    ++  + P       PEAL + G +D
Sbjct: 32  AFIDLETTGLDASRHEVLEVAILRVDARSLKVLAEYEARVQPTRLADAHPEALAVCGYSD 91

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126
           E  +D      + +               HN  FD GF+    +      P      +DT
Sbjct: 92  EEWRDALPLREVLATVTPLLA--GTLVAGHNTSFDWGFLVEGYRSTELPLPSVDYHRLDT 149

Query: 127 LSIARRKHPSSRN---DLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKM 174
            S+A     +       LN+L K +G+   HR + H A+ D+    +V  ++
Sbjct: 150 ASLAWPLLATGEVESLSLNALAKHFGL---HRPTPHRAMADARCALEVARRL 198


>gi|303240250|ref|ZP_07326769.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
           cellulolyticus CD2]
 gi|302592160|gb|EFL61889.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
           cellulolyticus CD2]
          Length = 211

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 20/179 (11%)

Query: 7   MRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEA 59
           M  I++D+E   L+SK       + IIEIGA++L    K   TFQ F+ P+  +K  P  
Sbjct: 1   MNYIIYDLE---LNSKPFKSKLPNEIIEIGAIKLDSDLKEIDTFQAFIKPHYFKKLFPVV 57

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI--AHNAKFDVGFINAELQRINKDP 117
            +   IT E + +  SF  I S F  +  + N+  I   H+   DV  +    +      
Sbjct: 58  KRKTKITQEDVNNAESFKEIISSFRKWIGD-NSILISWGHD---DVHHLLVNCKNNKITT 113

Query: 118 LDPSRIIDTLSIARRKHP---SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               + ID        +      R  L +      I +   S H AL D+   + ++ K
Sbjct: 114 SWLKKNIDLQKQVSSIYEVPAGQRYSLENAINVLEIDV-GESFHRALADARYTAQIFSK 171


>gi|260591581|ref|ZP_05857039.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319]
 gi|260536381|gb|EEX18998.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319]
          Length = 896

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 18/169 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC------PN--GRKNSPEALK 61
           +VFD ETTGLD   D IIEI A+++           +++       P    + N   A+ 
Sbjct: 515 VVFDTETTGLDVFADDIIEIAAMKIKGGEIVGEPLDLYIKTDKPILPKLGDKDNPMYAIY 574

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--D 119
              ++ E L    +       F  +   +    + HNA +D   I+  LQR   D L   
Sbjct: 575 HEKLSAEEL---ITPQEALQRFLAYIGTR--PILGHNASYDYNIIDNCLQRYCNDTLKAH 629

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +   D+L + R   PS     L SL + +   ++ ++ H A+ D    
Sbjct: 630 KNPCFDSLKLIRLLSPSLHSYKLESLLETF--QLTGKNSHQAIDDVGAT 676


>gi|116253032|ref|YP_768870.1| DNA polymerase/exonuclease [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257680|emb|CAK08778.1| putative DNA polymerase/exonuclease [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 196

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 7/151 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      +G +  ++  +  R  +  + P   + S   + +HGI 
Sbjct: 1   MKTIAIDFETA--NEQRGSACSVG-LAWIEDGRVTRVEERLIRPRDMRFSGMNIAIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D P F  +  EF +  + + A  IAHNA FD     A L  + +        + +
Sbjct: 58  PEHVEDAPEFPEVMDEFEE--DFRGATMIAHNAAFDFSVWRASLD-LYRQSYPELTYLCS 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRS 156
           L +A+R  P    + LN + +  G+   H +
Sbjct: 115 LKMAQRIWPHFLSHRLNLIAEHLGLRFVHHN 145


>gi|229119030|ref|ZP_04248372.1| exonuclease [Bacillus cereus Rock1-3]
 gi|228664421|gb|EEL19920.1| exonuclease [Bacillus cereus Rock1-3]
          Length = 240

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 17/171 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N+ + ++ D ETTGL  + D+IIEI  ++L      N      + P       EA  +HG
Sbjct: 80  NRDQFVILDTETTGLTLR-DQIIEICVIDLTGKILLN----SLVKPTI-NIPAEAASIHG 133

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E + D PS+  I+ +  +         + +NA+FD+G I +     N       +  
Sbjct: 134 ITNEMVHDAPSWIEIYIKLCEV--TAGKTLLIYNAEFDLGMIESTCI-ANNVEFKNFKST 190

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + +      S R   L+   +   +TI    KH A  D   + ++  ++
Sbjct: 191 CIMKMYADYVDSKRWISLSDATE---LTI----KHRAASDCFAVLELLQQL 234


>gi|239948068|ref|ZP_04699821.1| DNA polymerase III subunit epsilon [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922344|gb|EER22368.1| DNA polymerase III subunit epsilon [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 251

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 61/161 (37%), Gaps = 17/161 (10%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL---DYSK--TNRTFQVFLCPNGRKNSPEALKLHGI 65
             D ETTGL    D+I+E+G V+     D         F  +  P     +P   +L GI
Sbjct: 2   FLDTETTGLSYVTDKILELGMVKFEYTNDGRIYNILEEFNQYQDPK-EPIAPHITELTGI 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE ++D+        E  +F  +  +  IAHNA FD  F +     +       +R   
Sbjct: 61  TDEMVRDQNINKE---EVINFL-QNVSIIIAHNAGFDRPFFDKLFPDLTTKIWGCAR--- 113

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            L I  +        L  L  +Y         H A++D   
Sbjct: 114 -LDIDWKYEKIESQKLEYLAYKYNFFYEG---HRAVIDCLA 150


>gi|220921028|ref|YP_002496329.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
 gi|219945634|gb|ACL56026.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
          Length = 222

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 8/171 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR----TFQVFLCPNGRKNSPEALKLH 63
           R +  D+E TGL +  DRI+  GAV L   S        T    +    R + P A  +H
Sbjct: 19  RLLAIDVEATGL-AARDRIVSFGAVALDTASLLGPSPAPTCHHLIFDPQRVSHPRAEAVH 77

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G  D  L+ +   +   +       + +   +AHNA FD G +  E       P   +R 
Sbjct: 78  GYDDWLLRHQDPAALHLNAIAALLGQADL-IVAHNAAFDFGLLQREFAAA-GRPALAART 135

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             TL   RR+  +    L+++C+R  +  +   +HGAL D+ L   VY+ +
Sbjct: 136 YCTLEAYRRRGEAGPATLDAVCRRVRLQRTGE-RHGALEDAWLALRVYLWL 185


>gi|256784395|ref|ZP_05522826.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289768274|ref|ZP_06527652.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289698473|gb|EFD65902.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
          Length = 244

 Score = 97.6 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 15/162 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   I FD+ETTG D +  RI+    +E++      R    +L   G +   +A+ 
Sbjct: 1   MGWHRELLIGFDLETTGTDPREARIVTGAVIEVMGSEPLGRR--EWLADPGVEIPADAVA 58

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKD- 116
           +HGI++E   ++      +         +        +A+NA FD+  + AEL+R     
Sbjct: 59  VHGISNERAAREGRPADQVADAIATVLVDHWKAGVPVVAYNAAFDLTLLAAELRRHALPS 118

Query: 117 ------PLDPSRIID--TLSIARRKHPSSRNDLNSLCKRYGI 150
                  LDP+ +ID  T+  +  ++   + +L ++C+ YG+
Sbjct: 119 LRERLGGLDPAPVIDPYTIDRSVDRYRRGKRNLEAVCREYGV 160


>gi|297561085|ref|YP_003680059.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296845533|gb|ADH67553.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 335

 Score = 97.6 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 59/152 (38%), Gaps = 11/152 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGITDE 68
             D ET   +        +G V + D +  +R +   + P  + +  S   + +HGIT  
Sbjct: 7   AIDFETA--NHDRGSACAVGLVRVRDGAVVDR-YTTLIRPPRQVDFFSRHNIAVHGITAA 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D PS+    +   +F        +AHNA FD+G +                   TL+
Sbjct: 64  DVADAPSWEQAHARIVEF--ADGGPLVAHNAAFDMGVLRQACGHTGLSH-PAWEYACTLA 120

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHG 159
           ++RR       + L ++C   G  ++H   H 
Sbjct: 121 LSRRTWSGLPDHKLPTVCAHIGHRVTHH--HR 150


>gi|326791308|ref|YP_004309129.1| exonuclease RNase T and DNA polymerase III [Clostridium lentocellum
           DSM 5427]
 gi|326542072|gb|ADZ83931.1| Exonuclease RNase T and DNA polymerase III [Clostridium lentocellum
           DSM 5427]
          Length = 248

 Score = 97.2 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 19/233 (8%)

Query: 7   MRKIVFDIETT-GLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNG-RK 54
           M  IVFD+E      ++ D           II+IGAV+L +   T  TF   + P    +
Sbjct: 1   MNYIVFDLEFNQDFSARKDVVNKENPYTFEIIQIGAVKLDENFHTIDTFNRLIKPTIYEE 60

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            +P    L GIT E L  + SFS ++  + +F   + A         D+  +   +    
Sbjct: 61  MNPFVSYLTGITIEQLAQEESFSEVYKAYIEFIGSRKAICCIW-GTSDMKILFKNILYHK 119

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRND----LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            DP    R+   +      +    +     L        I  S  + H AL D++  +++
Sbjct: 120 LDPAPFPRMFINIQPYTSIYLGLPSKKLLRLQDAVNMLQIPTST-AFHLALSDAYYTAEI 178

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI-TKEELD 222
           + K+       N        +  +  KK +   +L+K+   ++ R  T+EE  
Sbjct: 179 FKKVYQPSITPNCYDPYEASKLSRPAKKHIDFDALIKQFVKMYHRPMTEEEQA 231


>gi|157375459|ref|YP_001474059.1| DNA polymerase III subunit epsilon [Shewanella sediminis HAW-EB3]
 gi|157317833|gb|ABV36931.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis
           HAW-EB3]
          Length = 238

 Score = 97.2 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 27/202 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
            +   +  +  D ETTGLD+  + II IG V   L      +    F+ P   K   +++
Sbjct: 41  TKLKDIDFVALDFETTGLDANQNSIISIGLVPFTLQRIACRQAKHWFVTPED-KLQEDSI 99

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGIT   LK  P    I  +  D         + H  + +  F +A L+ + K+ +  
Sbjct: 100 IIHGITHSDLKGAPDLLRILEQLLDELA--GKIVVVHYRRIERDFFDAALRSLIKEGI-V 156

Query: 121 SRIIDTLSIARRKHPSSRND--------------LNSLCKRYGITISHRSKHGALLDSHL 166
             ++DT+ I      +                  L +   RY +       H AL D+  
Sbjct: 157 FPVVDTMQIEADIQQARPRSFIDWLKNTRPESIRLANSRTRYNLPTY--PPHDALTDAIA 214

Query: 167 LSDVYIKMMVGGSQINFGFKTN 188
            +++        +QI+  F  +
Sbjct: 215 TAELL------QAQIHHHFSPD 230


>gi|319956599|ref|YP_004167862.1| exonuclease rnase t and DNA polymerase iii [Nitratifractor
           salsuginis DSM 16511]
 gi|319419003|gb|ADV46113.1| Exonuclease RNase T and DNA polymerase III [Nitratifractor
           salsuginis DSM 16511]
          Length = 294

 Score = 97.2 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 28/186 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I+ D ETTG D++ DRI ++  + L +  +    +     P   +   +A+ +H IT
Sbjct: 1   MKTIILDTETTGTDAE-DRICQLAYLVLDESGEVVEHYNELCTPP-LEIKYDAMAIHHIT 58

Query: 67  DEFLKDKP--SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            E L+ KP  + +  F    +  + +N   +  NA FD+  +  E         +  R+I
Sbjct: 59  PEMLEGKPACTETEGFRRLRELNSPENL-LVIQNAPFDLAMLEKE------GFENRMRLI 111

Query: 125 DTLSIARRKHPSS--------RNDLN------SLCKRYGITISHRSKHGALLDSHLLSDV 170
           DT  + R+  P S        R  L       +L ++ G  +     H AL D  +L  +
Sbjct: 112 DTFRLVRKFMPDSPQHGQQYLRYALGLYREEPALIEKLGEEV---RAHDALGDVIVLKHL 168

Query: 171 YIKMMV 176
           Y  ++ 
Sbjct: 169 YEYLLR 174


>gi|315500766|ref|YP_004089567.1| Exonuclease RNase T and DNA polymerase III [Asticcacaulis
           excentricus CB 48]
 gi|315418778|gb|ADU15416.1| Exonuclease RNase T and DNA polymerase III [Asticcacaulis
           excentricus CB 48]
          Length = 324

 Score = 97.2 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 62/168 (36%), Gaps = 17/168 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+   D +IEIGA+     D        +V+  L   G        +L GI
Sbjct: 73  VIIDTETTGLNKAEDAVIEIGAIAFRFDDRGVVGDLIEVYGALQDPGFPIPANITELTGI 132

Query: 66  TDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            D  +K +   F        +   +     IAHNA FD        +R++    D +   
Sbjct: 133 DDAMVKGQSIDFH-----VLEALIKPADLIIAHNAAFDRP----YCERLSPAFADKAWAC 183

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               I  +      + L  L  + G        H A+ D   L +V +
Sbjct: 184 SNSEIDWKARGFEGSKLGYLITQSG---YFHDGHRAVDDCFALLEVLL 228


>gi|153003684|ref|YP_001378009.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027257|gb|ABS25025.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
          Length = 200

 Score = 97.2 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 77/183 (42%), Gaps = 15/183 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRK-NSPEALK 61
              +     D+ET GLD K+D I+ +G V +   +     ++   + P+ R+   P++++
Sbjct: 8   WESVTYWALDLETGGLDPKSDPILAVGMVPIRGGAIRLAESYASLVRPDVREGIRPDSMR 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            H +    + + P   ++  +       + A  + HNA  DV F+    +R  +    P 
Sbjct: 68  AHHLVPRDVAEAPPLETVLDQIDARIR-EGALLV-HNAALDVSFLRRAYRRAGRRWPGP- 124

Query: 122 RIIDTLSIARRKHPSSRND----------LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            ++DT+ +  +    +R            LN    R    +   + H AL D+   ++++
Sbjct: 125 PVVDTVVLLLKAAKRARFVDPDATGIEPELNLAAARRRAKLPEYASHDALTDAIAAAELF 184

Query: 172 IKM 174
           + +
Sbjct: 185 LVL 187


>gi|288800251|ref|ZP_06405709.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332464|gb|EFC70944.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 896

 Score = 97.2 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 29/229 (12%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNS-------- 56
           +   +VFD ETTGL+   D I++I AV++       N  F++F+    R           
Sbjct: 511 QDTLVVFDTETTGLNVLEDDIVQIAAVKIAKGKVLENERFEIFID-TKRPIPAMLGDIEN 569

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P   ++   T        + +   + F ++ +   A  + HNA +D   +   L R    
Sbjct: 570 PLIEEIKKHTLH------TPAEALARFMEYID--GAMLVGHNATYDYQILYNNLLRYLPQ 621

Query: 117 PLDPSRI---IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                +    IDTL + R   PS +N  L +L + +   +  ++ H A  D H      +
Sbjct: 622 YTFLQKHSSYIDTLKLTRLLQPSLKNYKLKNLLQEF--QLEGQNTHLADADVHAT----V 675

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
            ++    Q +      +  F     K    +  LKR      R  ++EL
Sbjct: 676 GLVHFCYQQSVEKLKGQSEFLA-HPKVDAKVQKLKRLYGDIYRQAQQEL 723


>gi|270676235|ref|ZP_06222692.1| ribonuclease T [Haemophilus influenzae HK1212]
 gi|270316426|gb|EFA28313.1| ribonuclease T [Haemophilus influenzae HK1212]
          Length = 164

 Score = 97.2 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 20/165 (12%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55
           KN+ R    ++ D+ET G D+K D ++E+ A+ L      Y   ++     + P  G   
Sbjct: 2   KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 61

Query: 56  SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107
           +PE+LK +GI     L+         +  +          + Q +  +AHNA FD  F+ 
Sbjct: 62  NPESLKFNGIDIHNPLRGTVPELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVM 121

Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150
           A  +R    ++P  P  + DT S+A       +  L   C+   I
Sbjct: 122 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKI 164


>gi|189500655|ref|YP_001960125.1| Exonuclease RNase T and DNA polymerase III [Chlorobium
           phaeobacteroides BS1]
 gi|189496096|gb|ACE04644.1| Exonuclease RNase T and DNA polymerase III [Chlorobium
           phaeobacteroides BS1]
          Length = 185

 Score = 97.2 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 22/186 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGIT 66
           + +  D+ETTG +     II+IGA+  +          +   P+ G      AL + G +
Sbjct: 4   KVLYIDVETTGTNPAKHGIIQIGAIMEV-SGIIAEELNLKCAPHSGADIDDHALTITGTS 62

Query: 67  DEFLKDKPSFSSIFSEFWDFF--------NEQNAEWIAHNAKFDVGFINAELQ----RIN 114
            E L  + S      +F  F          E       +N  FD+ FI    +    +  
Sbjct: 63  REELTHRMSSKEALLQFKQFLNRYVEQYDREDKCYPAGYNVHFDLDFIQQWFKMHGDKYG 122

Query: 115 KDPLDPSRIIDTLSIARRK-----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                  R +D L +   K            L ++C+ YGI +     H A  D     +
Sbjct: 123 IGSYVNWRRLDPLPVLFMKDFTGALHLPDYKLETVCRHYGIRLE---AHDAFSDIRATRE 179

Query: 170 VYIKMM 175
           +  K++
Sbjct: 180 LLTKLL 185


>gi|190892568|ref|YP_001979110.1| DNA polymerase III protein, epsilon subunit [Rhizobium etli CIAT
           652]
 gi|190697847|gb|ACE91932.1| probable DNA polymerase III protein, epsilon subunit [Rhizobium
           etli CIAT 652]
          Length = 196

 Score = 97.2 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 7/151 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      +G +  ++  +  R  +  + P   + S   + +HGI 
Sbjct: 1   MKTIAIDFETA--NEQRGSACSVG-LAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D P F  +  EF +  +   A  IAHNA FD     A L  + +        + +
Sbjct: 58  PEHVEDAPEFPEVMDEFHE--DISGATMIAHNAAFDFSVWRASLD-LYRQSYPELTYLCS 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRS 156
           L +A+R  P    + LN + +  G+   H +
Sbjct: 115 LKMAQRIWPHFLSHRLNLIAEHLGLRFMHHN 145


>gi|260767723|ref|ZP_05876658.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260617232|gb|EEX42416.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
          Length = 222

 Score = 97.2 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 77/180 (42%), Gaps = 17/180 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63
            +   +  DIET+GLD+++D I+ IG V +++            + P+G+ +  + + LH
Sbjct: 28  RQQPLLSLDIETSGLDAEHDHIVSIGWVPIVNQVIRLAEARYFLITPSGQNDPQQVV-LH 86

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I  +  +     +        F   +    +AH +  +  FI+  +Q+     L P   
Sbjct: 87  HIMPQMQRQGIPLAQAIELL--FTQLKGKVLLAHGSVVERQFIHHFMQQHGWPDL-PIVW 143

Query: 124 IDTLSIARRKHPSSRND----------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +DTL I +     +  +          L+++ KRY +       H AL D+   +++Y+ 
Sbjct: 144 LDTLKIEQAYAQYAPYNMPHSNANDWRLSTVRKRYHLP--AYQAHHALSDAIATAELYLA 201


>gi|212636083|ref|YP_002312608.1| DNA polymerase III subunit epsilon [Shewanella piezotolerans WP3]
 gi|212557567|gb|ACJ30021.1| Exonuclease [Shewanella piezotolerans WP3]
          Length = 238

 Score = 97.2 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 23/183 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGLD+  + II IG V          +    F+ P   K   +++ +HGIT 
Sbjct: 48  FVALDFETTGLDANENSIISIGLVPFTLRRIACRQAKHWFITPED-KLKEDSIIIHGITH 106

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT- 126
             LK  P    I  +  D         + H  + +  F +A L+ +  + +    ++DT 
Sbjct: 107 SDLKGAPDLLRILEQLLDELA--GKIVVVHYRRIERDFFDAALRSLINEGI-VFPVVDTM 163

Query: 127 --------------LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                         L   ++  P S   L +   RY +       H AL D+   +++  
Sbjct: 164 QIEADIQQAKPKRFLDWFKKSRPES-IRLANSRTRYNLPTY--PPHDALTDAIATAELLQ 220

Query: 173 KMM 175
             +
Sbjct: 221 AQI 223


>gi|127513296|ref|YP_001094493.1| exonuclease, RNase T and DNA polymerase III [Shewanella loihica
           PV-4]
 gi|126638591|gb|ABO24234.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica
           PV-4]
          Length = 226

 Score = 97.2 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 15/176 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+E TGL++  D+I+ IG V +       +      +   G  +  ++  +HGI D 
Sbjct: 44  LAIDLEMTGLNASFDQILSIGVVPIRQGQLILSEAQHKLVQIEG--SVGQSATIHGILDT 101

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L    +     + F      +    +AH+A  D+ F+ + LQ    +       IDTL 
Sbjct: 102 HLDAALTPEQAMAWFLSV--SEGMVLVAHHAPLDLAFLQSGLQACLGEK-PRLLAIDTLL 158

Query: 129 IARRKHPSSRNDLNSLC-------KRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           + +++    +  L   C        RYG+ +   + H AL+D+    ++ +  +  
Sbjct: 159 LEKQRLLRQQEHLQEGCLRLGRSRARYGLPVY--AAHNALIDALACGELLLAQVAA 212


>gi|150016887|ref|YP_001309141.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903352|gb|ABR34185.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
          Length = 976

 Score = 97.2 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 12/171 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  DIETTGLD     IIEIGAV++ +   T  T+   + P GR           + +  
Sbjct: 13  IYLDIETTGLDETCSEIIEIGAVKVKNGVIT--TYNTLIRPRGRVPISIYSLCSDLKEAD 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L    S +SI  E  +F   ++   I HN  F+  F++  +      P   + I+D++ +
Sbjct: 71  LLSARSLNSIKQEVLEFL--EDLPLICHNGNFERKFLSFYI------PEIKNTIMDSMEL 122

Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           A    P     +LNSL K     ++    H  L DS     V   +++   
Sbjct: 123 AIILEPWRKEYNLNSLIKEI-TNLNKDELHRGLSDSIDTLKVVNSLLLRQW 172


>gi|315609065|ref|ZP_07884035.1| exonuclease [Prevotella buccae ATCC 33574]
 gi|315249269|gb|EFU29288.1| exonuclease [Prevotella buccae ATCC 33574]
          Length = 163

 Score = 97.2 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 6/132 (4%)

Query: 40  TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
              +F   + P     +    ++HG+T    +  P F  ++    +     +   +AHN+
Sbjct: 32  IADSFYSLIQPEPNYYTYWCTRVHGLTQADTETAPVFPHVWERITELIG--DLPLVAHNS 89

Query: 100 KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKH 158
            FD   + A   R  +      R  DTL  ARR  P   N  L ++    G  ++    H
Sbjct: 90  PFDESCLKAVF-RCYQMDYPDYRFYDTLRTARRVFPHLPNHQLQTVAAACGYDLT--CHH 146

Query: 159 GALLDSHLLSDV 170
            AL D+   + +
Sbjct: 147 HALADAEACARI 158


>gi|254286611|ref|ZP_04961567.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           AM-19226]
 gi|150423369|gb|EDN15314.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           AM-19226]
          Length = 236

 Score = 97.2 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 62/177 (35%), Gaps = 18/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+++ D I+ IG V            + +L    +     ++  HGIT   
Sbjct: 48  VALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQARYWLVKPSQPLEEGSIVFHGITHSE 107

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+   +   +  E  +         + H    +  F+      I  D      ++DTL I
Sbjct: 108 LQHAQAPEQVLKELLETL--YGKIVVVHFRHIEREFLRQISLNI-WDEAIEFPVLDTLEI 164

Query: 130 ARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R+               P     L     RY +     S H AL D+   ++++  
Sbjct: 165 ERQLLDKQRSLWQRITRRPLPSIRLGQSRMRYHLPPY--SPHHALTDAIATAELFQA 219


>gi|315179445|gb|ADT86359.1| DNA polymerase III, epsilon chain [Vibrio furnissii NCTC 11218]
          Length = 224

 Score = 97.2 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 77/180 (42%), Gaps = 17/180 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63
            +   +  DIET+GLD+++D I+ IG V +++            + P+G+ +  + + LH
Sbjct: 30  RQQPLLSLDIETSGLDAEHDHIVSIGWVPIVNQVIRLAEARYFLITPSGQDDPQQVV-LH 88

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I  +  +     +        F   +    +AH +  +  FI+  +Q+     L P   
Sbjct: 89  HIMPQMQRQGIPLAQAIELL--FTQLKGKVLLAHGSVVERQFIHHFMQQHGWPDL-PIVW 145

Query: 124 IDTLSIARRKHPSSRND----------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +DTL I +     +  +          L+++ KRY +       H AL D+   +++Y+ 
Sbjct: 146 LDTLKIEQAYAQYAPYNTPHSNANDWRLSTVRKRYHLP--AYQAHHALSDAIATAELYLA 203


>gi|163753129|ref|ZP_02160253.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1]
 gi|161326861|gb|EDP98186.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1]
          Length = 1460

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 81/232 (34%), Gaps = 25/232 (10%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R I+I      +           + P+G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPISDTDNWPRCIQIAWQLHDELGNLIEHQDYLVQPDGFNIPYD 61

Query: 59  ALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-D 116
           A K+HGI+ E   ++  S   +  +F +    +    +  N  FDV  + AE  R N  +
Sbjct: 62  AEKIHGISTELAAEQGISLQEVLEKF-NIALSKTKFIVGQNVGFDVNIMGAEFYRENVAN 120

Query: 117 PLDPSRIIDTLSIARRKH------PSSRNDLNSLCK----RYGITISHRSKHGALLDSHL 166
            L    ++DT +    +          +  L +L +     +G+       H A  D   
Sbjct: 121 KLQELPVLDTCTEDTAQLCQIPGGRGGKFKLPTLTELHQYLFGVGF--GEAHNATADVEA 178

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
            +  +++++              D F +  +     I ++          ++
Sbjct: 179 TTRCFLELIRRKEYTIEQLDVAPDYFERFSENNPQPIEMIGLKHINLKAASE 230


>gi|255530778|ref|YP_003091150.1| DNA polymerase III subunit alpha [Pedobacter heparinus DSM 2366]
 gi|255343762|gb|ACU03088.1| DNA polymerase III, alpha subunit [Pedobacter heparinus DSM 2366]
          Length = 1476

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 25/233 (10%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL         D     R I+I      +           + P+G     +
Sbjct: 2   YLIFDTETTGLPRNWNAPITDTDNWPRCIQIAWQLHDELGNMIEHQDYLVKPDGFNIPYD 61

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
           A ++HGI+ E   +     + +  +F +    +    +  N  FDV  +  EL R+  + 
Sbjct: 62  AERIHGISTELATEQGIELAEVLEKF-NIALSKAKFVVGQNIGFDVNIMGCELYRLGVES 120

Query: 117 PLDPSRIIDTLSIA---RRKHPSSR---NDLNSLCK----RYGITISHRSKHGALLDSHL 166
           P+    ++DT +       K P  R     L +L +     +G   +    H A  D   
Sbjct: 121 PMAQMPVLDTCTEITAELLKLPGGRGGKFKLPNLTELHQYLFGEPFA--EAHNATADVEA 178

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            +  +++++   +      + ++    + ++ T      +  +       + E
Sbjct: 179 TTRCFLQLIKIDAFRPEQLQADQQYITRFKQNTPQVFERVGLNHINLKAASDE 231


>gi|145298879|ref|YP_001141720.1| DNA polymerase III subunit epsilon [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851651|gb|ABO89972.1| DNA polymerase III, epsilon subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 208

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 68/176 (38%), Gaps = 5/176 (2%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   I  D ETT LD     I+ IGAV +                     + +++ +HG+
Sbjct: 28  EDELIALDFETTSLDPARAEIVSIGAVRIKGNRILTGEALSLRVQAPASLNAQSVVIHGL 87

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRII 124
             + L+      +   +   F   +  E + ++  +D+  +N A  ++           +
Sbjct: 88  RHQDLQQGMRLEAALRQLLAFIGPR--ELVGYHIAYDLRILNLACQKQWGLTLAQQGIEV 145

Query: 125 DTLSIA--RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             L      R++P +  DL+    R  + +     H AL D+   + +Y+++  GG
Sbjct: 146 SRLYHDHLYRRYPDAVIDLHLAAIRQHLNLPSLPVHDALSDAITAALIYLRLTQGG 201


>gi|86136890|ref|ZP_01055468.1| hypothetical protein MED193_14487 [Roseobacter sp. MED193]
 gi|85826214|gb|EAQ46411.1| hypothetical protein MED193_14487 [Roseobacter sp. MED193]
          Length = 202

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 15/171 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
             R I  D+ET   DS +   I I  V   ++    R+F  ++ P  +  +P   +LHGI
Sbjct: 14  PFRFIALDVETASRDSASICQIGIACVCHDNH---IRSFTTYVNPE-QSFAPFNTELHGI 69

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             + +   P F   ++             + H + FD   ++A   R  + P       D
Sbjct: 70  DAQTVATAPRFPEAWTMLKPLLELH--HLVQH-SSFDSRAVSAAC-RAYRMPNADLSWSD 125

Query: 126 TLSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           ++ IAR+  P  +    + L +L +  G++  H   H A  D+   + V +
Sbjct: 126 SVKIARKAWPEFKGNGGHGLANLKQELGLSFQH---HDAGEDARAAAQVVL 173


>gi|153005992|ref|YP_001380317.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
 gi|152029565|gb|ABS27333.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
          Length = 213

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 73/180 (40%), Gaps = 12/180 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPN-GRKNSPEALK 61
            + +     D+ET GLD+K D ++ IG V +          ++  + P+ G + +  ++ 
Sbjct: 24  WDSLVYWAIDVETGGLDAKRDPLLAIGMVPVRAGRIRLGECYRTLVRPHAGTRITSASVT 83

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            H +     +  P    +  E  +    + A    H+A  DV F+  +  R         
Sbjct: 84  AHQLVSNDFEAAPPLGDVLPEV-ERRAREGALLF-HHAAIDVAFLRRDFARTGLTW-PSC 140

Query: 122 RIIDT----LSIARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++DT    +  A+ + P+   D   LN    R  + +     H AL D+   +++++ +
Sbjct: 141 PVVDTARLLVRHAQLRDPTRPRDHIALNLSVARAELGLPEYQAHDALSDAIATAELFLAL 200


>gi|59713532|ref|YP_206307.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
 gi|59481780|gb|AAW87419.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
          Length = 259

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 18/182 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE------ 58
           N M   V D ET+GL+ K D I+ +G V ++D      + Q  +       S E      
Sbjct: 62  NDMAFTVVDFETSGLNPKTDHIVSVGWVHIIDGVIKLSSAQHHIINEPTSISAEDGHEER 121

Query: 59  ---ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
              A  LH I  E  K   S       F  F N  +   + H A  +  F+   +  +  
Sbjct: 122 EHIARSLHHILPEQQKMGISLEEAMECF--FSNLPSNILVVHGATIEQRFLEQFILSLQL 179

Query: 116 DPLDPSRIIDTLSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             L P   +DTL I +     +R      L SL ++Y +       H AL+D+   ++++
Sbjct: 180 PNL-PIIWLDTLRIEQNTIQQNRYQRDFRLFSLRRQYKLP--DYPAHHALVDAISTAELF 236

Query: 172 IK 173
           + 
Sbjct: 237 LA 238


>gi|308446414|ref|XP_003087176.1| hypothetical protein CRE_18392 [Caenorhabditis remanei]
 gi|308260385|gb|EFP04338.1| hypothetical protein CRE_18392 [Caenorhabditis remanei]
          Length = 137

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 10/139 (7%)

Query: 103 VGFINAELQRINKDPLDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           + F++ E +R     L     + DTL++A+ KHP  +N L++L +RY I    R+ HGAL
Sbjct: 1   MNFLDMEFKRSGLQALSEVCEVTDTLAMAKSKHPGQKNSLDALVRRYEIPQRDRTFHGAL 60

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           LD+ +LSDVY+ M  G  Q++F          + ++ T      +          + EEL
Sbjct: 61  LDAEILSDVYLAMTGG--QVSFDMDALSAHTDQAQRNTTRKKIEINAP---IILPSDEEL 115

Query: 222 DEHDKTIQTL----GKNAI 236
           + H+  ++      G+  I
Sbjct: 116 EAHENWVKQFQEKHGEACI 134


>gi|116687265|ref|YP_840511.1| exonuclease, RNase T and DNA polymerase III [Burkholderia
           cenocepacia HI2424]
 gi|116652980|gb|ABK13618.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
           cenocepacia HI2424]
          Length = 293

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 19/168 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD +   I+EI  ++       +      + P        A ++HGITD 
Sbjct: 129 PLFIDTETTGLDHQ-AAIVEIAILDRAGAVLID----TLVKP-AMPIPAAATEIHGITDA 182

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P++++I  +  +    +    IAHN  FD   +     R +   L   R+  T+ 
Sbjct: 183 DVAGAPAWNTIGPQVAELLAGR--LLIAHNGAFDERLLYQT-SRSHGVTLPALRVECTME 239

Query: 129 ----IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                A R        L       G   +  ++H A  D+     + +
Sbjct: 240 LLNGWAGRWL-----SLADAALMLGAG-TFAARHRACADAEQCRQIVL 281


>gi|325678237|ref|ZP_08157866.1| exonuclease [Ruminococcus albus 8]
 gi|324110129|gb|EGC04316.1| exonuclease [Ruminococcus albus 8]
          Length = 651

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 19/172 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+ D ETTGL    D ++++  +      K    F  +  PN      EA  ++ I+ E 
Sbjct: 206 IILDTETTGLSPSYDELLQVSII----NGKGEVLFDSYFKPNAASWD-EAQAVNHISPEM 260

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +K+ P  +    E      ++  + + +N  FD+ F+   L        D  + +D + +
Sbjct: 261 VKNSPRLNEKAYEISQIL-DKAHKIVGYNVDFDLDFL--WLNGAGGSN-DNFKKVDVMQM 316

Query: 130 ARRKHPS--------SRNDLNSLCKRYGITISHRS--KHGALLDSHLLSDVY 171
               +              L      YG      +   H +L D +    VY
Sbjct: 317 FAPIYGEINEKYGGYKWQKLTKAADYYGYDWDSHAESAHNSLGDCYATLHVY 368


>gi|315925789|ref|ZP_07921996.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315620898|gb|EFV00872.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 158

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 6/120 (5%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R      +V D+ET GLD+  +RIIEIGAV++    +T  TF+  +  +  +   +    
Sbjct: 42  RTAPRPYVVIDLETDGLDAAKNRIIEIGAVKV--DGQTVSTFEQLIV-HPHRLPKKITDP 98

Query: 63  HGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            GITD  L D     +     F  F    +   I ++  FDV FIN  L R++ +PL   
Sbjct: 99  TGITDTLLADGGRPEAEAIKAFLAFIGSDD--LIRYHVDFDVQFINQTLHRMDIEPLIRC 156


>gi|197337117|ref|YP_002157942.1| DNA polymerase III, epsilon chain [Vibrio fischeri MJ11]
 gi|197314369|gb|ACH63818.1| DNA polymerase III, epsilon chain [Vibrio fischeri MJ11]
          Length = 259

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 71/182 (39%), Gaps = 18/182 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE------ 58
           N M   V D ET+GL+ K D I+ IG V +++      + Q  +       + E      
Sbjct: 62  NDMAFTVVDFETSGLNPKTDHIVSIGWVHIINGVIKLNSAQHHIINEPISINAEDEGEER 121

Query: 59  ---ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
              A  LH I  E  K   S       F  F N  +   + H A  +  F+      +  
Sbjct: 122 DHTARSLHHILPEQQKMGISLEKAMECF--FSNLPSNILVVHGATIEQRFLEQFFLSLQL 179

Query: 116 DPLDPSRIIDTLSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             L P   +DTL I +     +R      L SL ++Y +       H AL+D+   ++++
Sbjct: 180 PNL-PMIWLDTLRIEQNTIQQNRYQRDFRLFSLRRQYKLP--DYPAHHALVDAISTAELF 236

Query: 172 IK 173
           + 
Sbjct: 237 LA 238


>gi|330448832|ref|ZP_08312478.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328493023|dbj|GAA06975.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 376

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 16/162 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ETTGLD   + ++EI  V+       N      + P   ++  EA  +HGI+ E 
Sbjct: 2   IYLDTETTGLDPDFNEVLEIAIVDREGKILLN----TLVKPQRNESWHEAQVIHGISPEM 57

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN----AELQRINKDPLDPSRIID 125
           + + P+   +     D    Q+     +N +FD  F++     +   + +D    +   +
Sbjct: 58  VANAPTMEDLKPTINDIVKGQHVRI--YNKEFDAAFVDLSAAEKTSCVMRDMAKFNGYWN 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                 R        L+    +  ++    + H AL D+ + 
Sbjct: 116 NWHCDYRLL-----RLSEAASKMSLSWDG-TAHRALADTQMT 151


>gi|319948216|ref|ZP_08022374.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4]
 gi|319438119|gb|EFV93081.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4]
          Length = 240

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 22/192 (11%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNS---- 56
              +++R +  D+ETTGLD + DR++ +G V +       R    + L  +GR       
Sbjct: 38  TPLDEVRLLAVDVETTGLDPRRDRVVSVGFVPVDGDRIVLRGAGSMVLRSDGRSGDDGGV 97

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            ++  +HG+TD+ +      + +          +    +AH +  +V F+    +R+   
Sbjct: 98  GQSATVHGLTDDDVAHGSGVAEVLDRVLTALTGR--VLLAHYSTIEVDFLGVLCRRVYGV 155

Query: 117 PLDPSRIIDTLSIARRKHPSS------------RNDLNSLCKRYGITISHRSKHGALLDS 164
              P   +DTL + RR                    L     RYG+       H A +D+
Sbjct: 156 R-PPLEAVDTLELQRRILGGGIGMGFTADPSPDELRLWGARGRYGLP--RYRAHDAAVDA 212

Query: 165 HLLSDVYIKMMV 176
              +++Y+  + 
Sbjct: 213 LACAELYLAQVA 224


>gi|9630507|ref|NP_046936.1| gp41 [Enterobacteria phage N15]
 gi|3192726|gb|AAC19079.1| gp41 [Enterobacteria phage N15]
          Length = 304

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 73/207 (35%), Gaps = 29/207 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +  K   +V D ETTGL    +          +   +        + P  +   PE  
Sbjct: 13  MHKWLKSDYVVIDTETTGLGEYAEI-----IEIAIINMRGEVLLDTLVKPT-KPIPPEVT 66

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---------- 110
           +++ IT+E +   P++  +F +     ++   +W+A N+ FD   +              
Sbjct: 67  EINHITNEMVASAPAWCDVFPKVLAIISKH--KWLAWNSGFDARMLEQTCLNTIFLNKNA 124

Query: 111 -------QRINKDPLDPSRIIDTL--SIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
                   RI+   +D   + DT       +     R  L     R+G+ +     H AL
Sbjct: 125 YYVTAMVSRIHTSHIDAKAVYDTWYGEYDAKHQAFKRQSLTIAAARHGVLLEG--AHRAL 182

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTN 188
            D  ++  V  K+     QI    + +
Sbjct: 183 ADCKMVLAVLQKVCAPVPQIESSVEKD 209


>gi|291532696|emb|CBL05809.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Megamonas hypermegale ART12/1]
          Length = 142

 Score = 96.8 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 7/112 (6%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +K+HGI  + +++ P+F+ I+++   + + +    IAHNA FD+G + + + + N     
Sbjct: 8   IKIHGIIPQMVENAPTFADIWNDLRMYLDNR--IVIAHNAFFDMGVLRSCIWKYNL-AKP 64

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             +   T+ IAR+  P    + LN+L + + I   H   H AL D+ + + +
Sbjct: 65  QFKTACTVQIARKVWPQLPNHKLNTLGEFFQIQFKH---HDALDDAKVCAKI 113


>gi|227833455|ref|YP_002835162.1| hypothetical protein cauri_1631 [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184446|ref|ZP_06043867.1| hypothetical protein CaurA7_10673 [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454471|gb|ACP33224.1| hypothetical protein cauri_1631 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 461

 Score = 96.8 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 13/168 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67
               D+ET   +     + +IGAV   D  +T  RT+     P         + +HGIT 
Sbjct: 109 FTAVDVETA--NDNWGSVCQIGAVRFRDGEETESRTWLCTPPPGLEHFDKVNISIHGITA 166

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + D   F+   +E ++F        +AHNA+FD   + + L++ +  P+   R+  +L
Sbjct: 167 EDVADASPFADAAAELFEFLGTD--TLVAHNAQFDSTALRSGLKKAD-APVPEVRLACSL 223

Query: 128 SIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++AR          + + L ++    G        H A  D+    ++
Sbjct: 224 ALARDASRAGVIDVANHKLPTVASFLG--AEDFRHHEATADARAAGEI 269


>gi|88797051|ref|ZP_01112641.1| DNA polymerase III subunit epsilon [Reinekea sp. MED297]
 gi|88779920|gb|EAR11105.1| DNA polymerase III subunit epsilon [Reinekea sp. MED297]
          Length = 236

 Score = 96.8 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 72/186 (38%), Gaps = 25/186 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  DIETTGL+++ D II IG V       T  +     +    R  + E++ +H IT 
Sbjct: 48  FVAVDIETTGLNAEQDDIISIGLVPFTAQRITLAKARHWLVR--TRNLTSESVVVHRITH 105

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +   P   ++ SE       Q  + + H    +  F    +  +++       +IDTL
Sbjct: 106 SDIAQAPPLRAVLSEVIPCL--QGRQVVVHYRYMEREFFRQSVAGLHESTWL-FPVIDTL 162

Query: 128 S---------------IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                           + ++  PS R  L ++ +RY +       H AL D+   +++  
Sbjct: 163 ELEAAHLRQKQSIVSRLFKQTLPSLR--LPNVRERYNLPAYEN--HNALTDALATAELLQ 218

Query: 173 KMMVGG 178
             +   
Sbjct: 219 AQVAKQ 224


>gi|71064966|ref|YP_263693.1| DNA polymerase III subunit epsilon [Psychrobacter arcticus 273-4]
 gi|71037951|gb|AAZ18259.1| probable DNA polymerase III, epsilon subunit [Psychrobacter
           arcticus 273-4]
          Length = 203

 Score = 96.8 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 12/172 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D E TGL+ K   ++ + A+ +      T     +   P     S + + +HG+  
Sbjct: 35  WVAIDCEMTGLNPKKHHLLSVAAIHINGDKIDTGNGLHLLCRPPVMPKS-DTIVIHGLRT 93

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDT 126
             ++   S+  + S    F   +    +    + DVGF+N  ++R     L      I +
Sbjct: 94  ADVEHAMSYDEMLSLLLPFIGNR--PLVGFFPQIDVGFLNPLVKRYMGTHLPNEVIDIRS 151

Query: 127 LSIARRK-----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L   R        PS    LNS+ K Y I       H A  D+ + +  ++ 
Sbjct: 152 LYSRRMMGRSQGLPSQAQHLNSILKHYNIP--ELGTHDAYNDAIMTAMAFLH 201


>gi|224124082|ref|XP_002330100.1| predicted protein [Populus trichocarpa]
 gi|222871234|gb|EEF08365.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 22/231 (9%)

Query: 3   RKNKMRKIVFDIETT-----GLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCP-NGRKN 55
            +NK     FD+ETT     G   +   I+E GA+ +     +  R++   + P N +  
Sbjct: 1   MENKTEIAFFDVETTVPTRPG---QGYAILEFGAILVCPQKLEEIRSYSTLVRPSNPKLI 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRIN 114
           S  +++ +GI  E +   PSF+ I    +D  + +   W  HN  +FD   I      I 
Sbjct: 58  SSLSVRCNGIIPEAVVSAPSFADIADTVYDILHGR--IWAGHNIVRFDCVRIREAFAEIG 115

Query: 115 KDPLDPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +   +P   ID+L++  +K    +    + SL   +G+       H +L D  +  +V  
Sbjct: 116 RAAPEPKGTIDSLALLTQKFGRRAGNMKMASLATYFGLGN---QTHRSLDDVRMNVEVLK 172

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
                 + + F    +     K      P     +  +P+F+ +T    + 
Sbjct: 173 H----CATVLFLNSPSSSSHVKSTPALSPENDRTEEKRPVFSLLTSNTAEA 219


>gi|288926311|ref|ZP_06420235.1| exonuclease [Prevotella buccae D17]
 gi|288336916|gb|EFC75278.1| exonuclease [Prevotella buccae D17]
          Length = 163

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 6/132 (4%)

Query: 40  TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
              +F   + P     +    ++HG+T    +  P F  ++    +     +   +AHN+
Sbjct: 32  IADSFYSLIQPESNYYTYWCTRVHGLTQADTETAPVFPHVWERITELIG--DLPLVAHNS 89

Query: 100 KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKH 158
            FD   + A   R  +      R  DTL  ARR  P   N  L ++    G  ++    H
Sbjct: 90  PFDESCLKAVF-RCYQMDYPDYRFYDTLRTARRVFPHLPNHQLQTVAAACGYDLT--CHH 146

Query: 159 GALLDSHLLSDV 170
            AL D+   + +
Sbjct: 147 HALADAEACARI 158


>gi|21224413|ref|NP_630192.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)]
 gi|13276811|emb|CAC33929.1| putative DNA polymerase [Streptomyces coelicolor A3(2)]
          Length = 244

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 15/162 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   I FD+ETTG D +  RI+    +E+       R    +L   G +   +A+ 
Sbjct: 1   MGWHRELLIGFDLETTGTDPREARIVTGAVIEVRGSEPLGRR--EWLADPGVEIPADAVA 58

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKD- 116
           +HGI++E   ++      +         +        +A+NA FD+  + AEL+R     
Sbjct: 59  VHGISNERAAREGRPADQVADAIATVLVDHWKAGVPVVAYNAAFDLTLLAAELRRHALPS 118

Query: 117 ------PLDPSRIID--TLSIARRKHPSSRNDLNSLCKRYGI 150
                  LDP+ +ID  T+  +  ++   + +L ++C+ YG+
Sbjct: 119 LRERLGGLDPAPVIDPYTIDRSVDRYRRGKRNLEAVCREYGV 160


>gi|83943990|ref|ZP_00956447.1| exonuclease [Sulfitobacter sp. EE-36]
 gi|83845237|gb|EAP83117.1| exonuclease [Sulfitobacter sp. EE-36]
          Length = 188

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 15/172 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
             + I  D+ET   DS +   I I  V   D      T+  ++ P     +P  + LHGI
Sbjct: 8   DFQFIALDVETACGDSASICQIGIACVGFDDSIL---TWSTYVDP-LMPFAPFNVDLHGI 63

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E ++   SF+ I+ + W   +      + H ++FD   INA  +     P       D
Sbjct: 64  GPETVRGAGSFAQIWPQIWPLLSRH--PMVQH-SRFDEYAINAACKAQGL-PRPRLTWHD 119

Query: 126 TLSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +++IARR  P  +    + L +L +   +   H   H A  D+   + V ++
Sbjct: 120 SVTIARRAWPELKGNGGHGLANLKQVLNLDFHH---HDAGEDARAAAMVVLR 168


>gi|251777997|ref|ZP_04820917.1| putative exonuclease [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082312|gb|EES48202.1| putative exonuclease [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 974

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 12/167 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH-GITDE 68
           I  DIETTGLD  N  IIEIGAV++ + S T  T++V + P G        KL  G+ +E
Sbjct: 12  IYLDIETTGLDENNCEIIEIGAVKIKNLSVT--TYEVLIRPKG-NVPVSIYKLCQGLKEE 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +      I  E   F   ++   I HN  F+  F++  +  I     D   +   L 
Sbjct: 69  ELMNSRHLEDIKKELLVFL--EDLPLICHNGGFERKFLSYHIPEIKNQIFDSMELSAILE 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             R+++     +L+SL K   I +     H  L DS     V   ++
Sbjct: 127 PWRKEY-----NLDSLIKSITI-LDKDEFHRGLEDSIDTLKVVNSLL 167


>gi|121606153|ref|YP_983482.1| exonuclease, RNase T and DNA polymerase III [Polaromonas
           naphthalenivorans CJ2]
 gi|120595122|gb|ABM38561.1| Exonuclease, RNase T and DNA polymerase III [Polaromonas
           naphthalenivorans CJ2]
          Length = 550

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 12/178 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N    ++ D ETTGL      ++E+GA  +  +      F+  L        P + ++H
Sbjct: 1   MNHQAWVLIDTETTGLTVPI-FVVELGAQRMRGWLPEGSPFRRLLN-QNLDIPPASSRVH 58

Query: 64  GITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDPLDPS 121
           G T E L +D    + ++ +F  +        +A N ++D+   +  E +R+   P+  +
Sbjct: 59  GYTREILERDGEPAAVVYRDFAAYAG--GLPVVAFNLEYDLDEVLLPEWKRLGITPMVTA 116

Query: 122 RIIDTLSIARRKH---PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                L +A+R     P+    L +L + Y   +  R  H AL D   ++D+  K++ 
Sbjct: 117 -GFCALRLAQRLLDPVPAGNCKLQTLRQYY--RLPERGAHTALGDVETVADLLAKVLR 171


>gi|290968085|ref|ZP_06559634.1| DNA polymerase III subunit epsilon domain protein [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781991|gb|EFD94570.1| DNA polymerase III subunit epsilon domain protein [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 184

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 10/168 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +     D ET   +   +    + AV++         +   + P      P  + +HGIT
Sbjct: 2   LEFTAIDFETA--NKYANSACSLAAVQMRGTQCIQEQYS-LIKPPFMTFEPTNIAIHGIT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++ + +F  ++  F     ++     AH A FD   + + L+  + D +  +  + T
Sbjct: 59  PEQVRQEKNFLQLWPLFKPCMEKK--ILAAHYAVFDTRVLRSTLKTYHLD-VPAATYVCT 115

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + I+R+  P    + L+++    G +  H   H AL D+   + +   
Sbjct: 116 VQISRKVWPQLPNHKLDTVANMLGYSFHH---HHALEDAGACAYILCA 160


>gi|59712989|ref|YP_205765.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114]
 gi|59481090|gb|AAW86877.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
          Length = 213

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 79/174 (45%), Gaps = 11/174 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETT L+  +  ++ I A+++ +    T++T  + L P    NS +++K+H +  +
Sbjct: 31  VSIDCETTSLNPNHAELVSIAAIKIKNNRVLTSQTIHLKLTPPQSLNS-DSIKIHQLRHQ 89

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L    S     ++  +F   +    + ++ ++D   ++    R    PL  S I  +  
Sbjct: 90  DLHHGLSEQQAMTQLLEFIGNR--HIVGYHIRYDKKILDRACLRHFSHPLPNSLIEVSHI 147

Query: 129 IA---RRKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 R  P++  DL   ++ K  G+  + R  H AL D+   + +Y+++  G
Sbjct: 148 YHNKLERLLPNAYYDLSIEAISKHLGLPQADR--HDALEDAIAAALIYVRLTHG 199


>gi|304406144|ref|ZP_07387801.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus
           curdlanolyticus YK9]
 gi|304344728|gb|EFM10565.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus
           curdlanolyticus YK9]
          Length = 223

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 72/201 (35%), Gaps = 15/201 (7%)

Query: 7   MR-KIVFDIETTGLDSKN--DRIIEIGAVELLDYS---KTNRTFQVFLCPN-GRKNSPEA 59
           MR  IV+D+E T L  +     IIEIGAV+L D          FQ ++ P   +  +   
Sbjct: 1   MRTYIVYDLEFTVLRKQQYAADIIEIGAVKLTDGDQGPIEIDRFQTYVKPERNKVITTHT 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +  GIT E +   P+F      F  +  +      +     D      + + +  +   
Sbjct: 61  TEFTGITQEQVDAAPTFPDAIDLFRQWIGDTTYYLCSW-GPDDKQHFVRQCRDMKIELNW 119

Query: 120 PSRIIDTLSIARRKHP---SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
              + D      +      S R  L    +  G      ++H AL D+   + ++++M  
Sbjct: 120 LRNMNDLQLYYTKLQGNDASKRIGLARALETAGFVFDG-AQHRALDDAANTARLFVRM-- 176

Query: 177 GGSQINFGFKTNEDRFFKEEK 197
              QI        D    E K
Sbjct: 177 -FDQITLEQNNAADDPLYETK 196


>gi|227548036|ref|ZP_03978085.1| DNA polymerase III subunit epsilon [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079890|gb|EEI17853.1| DNA polymerase III subunit epsilon [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 223

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 15/188 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +  R + FD+ETT  +    RI+    V  +D S    T +  L   G +   EA 
Sbjct: 1   MASFDASRMLSFDLETTSANPGEARIVTSALVR-IDGSSVTSTEE--LADPGVEIPEEAA 57

Query: 61  KLHGITDE-FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKD 116
            +HGIT E    +      + +E         E     +  NA +D+  +    +R+   
Sbjct: 58  AVHGITTEKARAEGRPHDEVLAETVAEIRKCWEDGLTLVVFNAPYDLTVL----RRLTGT 113

Query: 117 PLDPSRIIDTL--SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                 + D L    A+ ++   + +L +L + YG+ + +   H A  D+   + +  K 
Sbjct: 114 FTVDGPVFDPLVIDRAKDRYRKGKRNLGALSEIYGVRLDN--AHEATSDATAAARIAWKQ 171

Query: 175 MVGGSQIN 182
           +    ++ 
Sbjct: 172 VRMWPELA 179


>gi|313681469|ref|YP_004059207.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154329|gb|ADR33007.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 247

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 25/189 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I+ D ETTG    +DRII++G   ++   K    +   +C      S  A+++HGIT 
Sbjct: 3   KYILLDTETTG-AGDDDRIIQLG--YMVLDGKNVEVYNE-MCSTEVAISYGAMEVHGITP 58

Query: 68  EFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           E ++ KPS      F +  +  N  +   I HNA FD+G +  E      +     R+ID
Sbjct: 59  EMIEGKPSCRETSAFQKLCE-LNTSDNVLIIHNAPFDLGMLTKE------NFSSQMRLID 111

Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGI-TISHRS---------KHGALLDSHLLSDVYIKM 174
           TL  AR        + L     R G+  I              H A+ D  +L  +++  
Sbjct: 112 TLRCARHLFDEEESHRLQYFRYRLGLYKIEQDEAESLGIEVKAHDAIGDVLVL-KLFLTE 170

Query: 175 MVGGSQINF 183
           +    Q  +
Sbjct: 171 LRKRLQERY 179


>gi|239932382|ref|ZP_04689335.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291440749|ref|ZP_06580139.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291343644|gb|EFE70600.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
          Length = 241

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 57/167 (34%), Gaps = 15/167 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    +     FD ETTG+D + DRI+    V         R     + P G      A 
Sbjct: 1   MTSWFEGPLAAFDTETTGVDVEADRIVSAALVVQDAPGTRPRVTDWLVNP-GVPVPAAAT 59

Query: 61  KLHGITDEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           ++HG+T E L+       P    +     +         +  NA FD+  ++ EL+R   
Sbjct: 60  EVHGLTQEHLQRNGRWPAPVMYEVAQALAE-QARVGRPLVVMNAPFDLTLLDRELRRHRA 118

Query: 116 DPLDPS--------RIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154
             L                L     ++   R  L  LC  YG+ +  
Sbjct: 119 SSLSRWFERVPLLVLDPRVLDKHLDRYRKGRRTLTDLCAHYGVPLEG 165


>gi|120437353|ref|YP_863039.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803]
 gi|117579503|emb|CAL67972.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803]
          Length = 1461

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 99/260 (38%), Gaps = 38/260 (14%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL         D     R I+I      +           + P+G     +
Sbjct: 2   YLIFDTETTGLPKNWNAPLTDSDNWPRCIQIAWQVHDEMGNLIENQDYLVQPDGFDIPYD 61

Query: 59  ALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKD 116
           + ++HGI+ +  K++      +  +F +   +++   +  N  FD+  + AE  +R  ++
Sbjct: 62  SERIHGISTDLAKEQGVPLDEVLEKF-NIALQKSKFVVGQNVGFDLNIMGAEFIRRDFEN 120

Query: 117 PLDPSRIIDTLSI---ARRKHPSSR---NDLNSLCKRYGITISH--RSKHGALLDSHLLS 168
            L    ++DT +       K P  R     L +L + +           H A  D    +
Sbjct: 121 SLQEMPVLDTCTEVTANLCKIPGGRGGKFKLPTLTELHEFLFEEAFGEAHNATADVEATT 180

Query: 169 DVYIKMMVGG----SQINFGFKTNEDRFFKEEKK----TVPNISLLKRDKPLFTR----- 215
             +++++        +++      E+      K+     + +I+L K  + +  R     
Sbjct: 181 RCFLELIRQRIYTIEELDVPVDYFENFSEANPKRIQLIGLKHINLKKASEKIRKRLEKQQ 240

Query: 216 ----ITKEELDEHDKTIQTL 231
               I+ EE+ E+ + +  +
Sbjct: 241 PSDDISNEEIQENLEKLDEV 260


>gi|300858286|ref|YP_003783269.1| hypothetical protein cpfrc_00868 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685740|gb|ADK28662.1| hypothetical protein cpfrc_00868 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206006|gb|ADL10348.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis C231]
 gi|302330559|gb|ADL20753.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276241|gb|ADO26140.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis I19]
          Length = 232

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 15/172 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + ++ + FD+ETT  +    RI+    V +       R     L   G +   EA K+HG
Sbjct: 12  DPLKVLSFDLETTSANPHEARIVSSALVRIDSNGAHPRE---LLADPGIEIPEEAAKVHG 68

Query: 65  ITDEFLKDKP-SFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDP 120
           IT E+ ++       +  E      +  A+    I +NA +D+  +    +++  D +  
Sbjct: 69  ITTEYAREHGRPHEEVLKETIAAIQQAWADGFTLIVYNAAYDLTVL----RKLTGDFVVT 124

Query: 121 SRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             + D   +  A  K    +  L  LC+ Y + + +   H A  D+   + +
Sbjct: 125 GPVFDPYVIDKALDKFRRGKRTLTDLCQHYNVRLDN--AHEATSDALAAARI 174


>gi|188589093|ref|YP_001920974.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188499374|gb|ACD52510.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 243

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 89/229 (38%), Gaps = 20/229 (8%)

Query: 7   MRKIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KN 55
           M  IV+D+E    + +             +I+IGAV+L    +   TF   + P    + 
Sbjct: 1   MNYIVYDLE---FNHQYSKDDKASNITFEVIQIGAVKLNSNLEVVSTFNRLIKPTVHTEI 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P    L  IT E +  +  FS ++ +F  F   +           D+  +   ++  N 
Sbjct: 58  HPFIKDLTQITTEMVNSEKYFSDVYDDFIKFIGNKEFTVCIW-GTSDIKELLKNVKFHNL 116

Query: 116 DPL-DPSRIIDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           + + D  + ID  ++A +       ++  L +  + + + I  +  H A  D++  + ++
Sbjct: 117 EEIYDLRKYIDVQNLASKYIKTQKGTKVGLKAAIEFFNLPIE-KEFHDAFNDAYYTAQIF 175

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
            K+     + +        R  + + K        + +K    ++++EE
Sbjct: 176 KKLYTSKVKSSTYNNPYSKRISESKPKVDTKGLFRQFEKMYSKKLSEEE 224


>gi|332520058|ref|ZP_08396522.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332044617|gb|EGI80811.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 1453

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 89/260 (34%), Gaps = 37/260 (14%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL  + D          R I+I             +    + P G     +
Sbjct: 2   YLIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDAMGNCIESEDYLVKPEGFNIPYD 61

Query: 59  ALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-D 116
           A K+HGI+ E  +++      +  +F    N +    +  N KFD+  + AE  R +  +
Sbjct: 62  AEKIHGISTELAQEQGVELIEVLEKFNIALN-KTKFVVGQNVKFDLNIMGAEFVREDIAN 120

Query: 117 PLDPSRIIDTLSIARRKH------PSSRNDLNSLCKRYGITISHR--SKHGALLDSHLLS 168
            L    ++DT +               R  L +L + +    +      H A  D    +
Sbjct: 121 QLQELPVLDTCTEHTASLCQIPGGRGGRFKLPTLTELHQYLFNQPFAEAHNATADVEATT 180

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL----------------KRDKPL 212
             +++++              D F    +     I L+                +  K  
Sbjct: 181 RCFLELIRRQQYTKEQLDVQPDYFENFSEANPQPIQLIGLKHINLKKESAKINARLQKEQ 240

Query: 213 FTRITKEELDEHDKTIQTLG 232
            + I+ EE+ E+   +Q + 
Sbjct: 241 SSGISSEEIKENIADLQAVD 260


>gi|239928182|ref|ZP_04685135.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291436512|ref|ZP_06575902.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291339407|gb|EFE66363.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
          Length = 238

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 67/171 (39%), Gaps = 17/171 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M          FD+ETTG D + DRI+    V L      +      L P G     +A 
Sbjct: 1   MTGWITGPLAAFDLETTGTDIETDRIVTAAVVRLEPDGAVSAERTWLLDP-GVVIPEQAA 59

Query: 61  KLHGITDEFLKD----KP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            +HGI  E  +      P +   I     +         +  NA++D+  ++ E +R   
Sbjct: 60  AIHGIPTEHARAHGVPAPRAIEEITRAVAEVLRA-GTPLVVMNARYDLSLLDRECRRYGL 118

Query: 116 DPLD------PSRIIDTLSIARRK--HPSSRNDLNSLCKRYGITISHRSKH 158
           + L       PS ++D L I +    +   +  L++LC  YG+++     H
Sbjct: 119 ESLSERLGAVPSPVVDPLVIDKHVDQYRKGKRALHALCAYYGVSLD--EAH 167


>gi|19069923|emb|CAC38117.2| polymerase epsilon subunit like protein [Providencia rettgeri]
 gi|19882268|gb|AAM01212.1| putative 3'-5'exonuclease [IncJ plasmid R391]
 gi|20095154|gb|AAM08020.1| hypothetical protein [Providencia rettgeri]
 gi|262318129|dbj|BAI48455.1| hypothetical protein [Proteus mirabilis]
          Length = 302

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 20/177 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPE 58
           ++   ++ D ETTGL + ++ IIE+G V++L                ++  P G+     
Sbjct: 48  DEQPMVLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDP-GKPIPEL 106

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DP 117
             +L GITDE ++ +            + ++ +   +AHNA+FD  F       +     
Sbjct: 107 ITELTGITDEMVQGQ-RIDDAL--VASWLSD-DPLVVAHNAQFDRPFFEKRFAALGHLSW 162

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +  ID      +        L  L  R G        H A  D   ++ ++  +
Sbjct: 163 ACSASGID-----WKALGFESRKLEYLLLRLGWFYEG---HRAATDCLAMAWLFQLL 211


>gi|18311136|ref|NP_563070.1| exonuclease family protein [Clostridium perfringens str. 13]
 gi|110799345|ref|YP_696832.1| exonuclease family protein [Clostridium perfringens ATCC 13124]
 gi|168205611|ref|ZP_02631616.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
 gi|168208856|ref|ZP_02634481.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|168212809|ref|ZP_02638434.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|168215781|ref|ZP_02641406.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
 gi|169344238|ref|ZP_02865220.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
 gi|182623972|ref|ZP_02951760.1| exonuclease family protein [Clostridium perfringens D str. JGS1721]
 gi|18145819|dbj|BAB81860.1| probable DNA polymerase III epsilon chain [Clostridium perfringens
           str. 13]
 gi|110673992|gb|ABG82979.1| exonuclease family protein [Clostridium perfringens ATCC 13124]
 gi|169297697|gb|EDS79797.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
 gi|170662857|gb|EDT15540.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
 gi|170713011|gb|EDT25193.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170715467|gb|EDT27649.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|177910865|gb|EDT73219.1| exonuclease family protein [Clostridium perfringens D str. JGS1721]
 gi|182382180|gb|EDT79659.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
          Length = 300

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 22/192 (11%)

Query: 7   MRKIVFDIE------TTGLDSK-------------NDRIIEIGAVELLDYSKTNRTFQVF 47
           M  ++ D+E       T                   + IIEIGA++L  + +    F+ +
Sbjct: 1   MGYVIIDLEFNNMQNITKFYPNIYNEQKDLKELDSYNEIIEIGAIKLNKFMQEVDEFKTY 60

Query: 48  LCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           + P+  K  +P+ + + GIT++ LKD   F        DF  E +    +      V  +
Sbjct: 61  IKPSVFKVLNPKIIDITGITEDHLKDGIKFEDAMDNLKDFIGEDD-ILCSWATDDIVHIV 119

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSH 165
           N       K+     + ID      +     ++  L    +   I +     H AL D+ 
Sbjct: 120 NNAKYHSYKNISWIKKYIDIQKYCTKILAHKKSLSLKHALEELKIKMDKSKLHDALNDAV 179

Query: 166 LLSDVYIKMMVG 177
             ++V+ ++  G
Sbjct: 180 YTAEVFKRLYNG 191


>gi|330505332|ref|YP_004382201.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
 gi|328919618|gb|AEB60449.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina NK-01]
          Length = 233

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 83/200 (41%), Gaps = 12/200 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALK 61
            ++ R +V D+ETTGL+ + D+++ IGAV ++D+   +    F+  L     + S   L 
Sbjct: 36  LHEQRLVVLDLETTGLNMRRDQVLAIGAV-VIDHGAIDFAEQFECTLHQPDHQASASTL- 93

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI    +      +    +F +F     +  +A +A FD   +   L++     L   
Sbjct: 94  IHGIAPSEVARGVDPAEGLLDFMEFVGS--SPLLAFHAGFDQRMLARALRQSLGYRL-QH 150

Query: 122 RIIDTLSIARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              D   IA    P +R     L+     +G+ +  R  H A  D+ + +++ + +    
Sbjct: 151 SFFDVAEIAPLLCPQARIRQGGLDDWVAEFGLQVHQR--HNASADALVTAELALMLFSKA 208

Query: 179 SQINFGFKTNEDRFFKEEKK 198
            +         +R     ++
Sbjct: 209 RRQGIDSLCELERQLASRRR 228


>gi|320094495|ref|ZP_08026269.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319978573|gb|EFW10142.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 238

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 91/241 (37%), Gaps = 26/241 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +       + FD ETTG     DR++    V  ++    +     +L   G +   +A  
Sbjct: 1   MTWTSDPWLGFDTETTGTSPFKDRLVTAALVLRVEGR--DDQVATWLADPGVEIPEQASA 58

Query: 62  LHGITDEFLKDKP-SFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGIT E+ ++       +  E      E   +    +A NA +D+  ++ EL R     
Sbjct: 59  VHGITTEYAREHGRPVEEVLEEVAGCLTEHWFRGFPVVAFNASYDITLVDRELSRHGLAT 118

Query: 118 L------DPSRIIDTLSIARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                  +P  ++D L + R+       +  L  +   YG+  S    H A +D  +  +
Sbjct: 119 FAERLDGEPMLVVDPLVLDRKLDRFRKGKKTLTDMAPVYGVEASP-DAHTAEVDVAMTLN 177

Query: 170 VYIKMMVGGSQINF-------GFKTNEDRFFKEE----KKTVPNISLLKRDKPLFTRITK 218
           V   +     ++         G++    R + E+     +     + ++RD PL    T+
Sbjct: 178 VLAGIARKFPELEDHDAASLTGYQARAHREWAEDFEKYLRRQGREASIERDWPLIMPRTR 237

Query: 219 E 219
           +
Sbjct: 238 D 238


>gi|306819092|ref|ZP_07452806.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus
           mulieris ATCC 35239]
 gi|304648068|gb|EFM45379.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus
           mulieris ATCC 35239]
          Length = 305

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 10/148 (6%)

Query: 6   KMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKL 62
            MR  +  D ET   + +      +G V      K + ++   L P+   +  +P  + +
Sbjct: 2   PMREFVAIDFETA--NEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWV 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGIT E ++D P +S I  +   F  ++    +AHN  FD   ++        + + P+R
Sbjct: 60  HGITSEDVQDAPQWSDIADQVMTFIGDR--PIVAHNMAFDGYVLSDLASLYGTEEI-PNR 116

Query: 123 IIDTLSIARRKHPSS--RNDLNSLCKRY 148
              T+ +AR+       R  L+ +   Y
Sbjct: 117 RFCTVRLARKILADKLERKTLDEVFDYY 144


>gi|255523173|ref|ZP_05390144.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|296186139|ref|ZP_06854544.1| exonuclease [Clostridium carboxidivorans P7]
 gi|255513041|gb|EET89310.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|296049407|gb|EFG88836.1| exonuclease [Clostridium carboxidivorans P7]
          Length = 255

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 73/185 (39%), Gaps = 19/185 (10%)

Query: 7   MRKIVFDIETT-GLDSKND-----------RIIEIGAVELLDYSKTNRTFQVFLCPN-GR 53
           M  IVFD+E    L+SK +            II+IGAV+L +  +        + P    
Sbjct: 1   MNYIVFDLEFNQSLNSKKENKNLTNLKCPFEIIQIGAVKLDENLQIISILNKLVKPELYT 60

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +P   ++ GIT + L  +  F  ++ E  +F               D+  +   +Q  
Sbjct: 61  VMNPFVEEMTGITIDMLNTEQPFQEVYKEILEFIGNDKNILCVW-GACDIKELFRNIQYH 119

Query: 114 NKDPLDPSRIIDTLSIARRKH----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           N D    S+    +     K+      +   L +  +   I I ++  H AL D++  ++
Sbjct: 120 NLDISPISKEYINIQFYASKYLNCPKGTNIGLKNAAELLNINIENK-FHNALNDAYYTAE 178

Query: 170 VYIKM 174
           V+ K+
Sbjct: 179 VFKKI 183


>gi|269977446|ref|ZP_06184418.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
 gi|269934362|gb|EEZ90924.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
          Length = 303

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 10/147 (6%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLH 63
           MR  +  D ET   + +      +G V      K + ++   L P+   +  +P  + +H
Sbjct: 1   MREFVAIDFETA--NEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWVH 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E ++D P +S I  +   F  ++    +AHN  FD   ++        + + P+R 
Sbjct: 59  GITSEDVQDAPQWSDIADQVMTFIGDR--PIVAHNMAFDGYVLSDLASLYGTEEI-PNRR 115

Query: 124 IDTLSIARRKHPSS--RNDLNSLCKRY 148
             T+ +AR+       R  L+ +   Y
Sbjct: 116 FCTVRLARKILADKLERKTLDEVFDYY 142


>gi|326335784|ref|ZP_08201964.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692023|gb|EGD33982.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 1485

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 89/255 (34%), Gaps = 36/255 (14%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL    +          R ++I         +        + P+G     +
Sbjct: 2   YLIFDTETTGLPRNYNAPISDSENWPRAVQIAWQLHDHKGQLLEHKDFLITPDGFTIPYD 61

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-D 116
           A ++HGI+ E   K   S   +F EF     +     +  N  FD+  + AE  R     
Sbjct: 62  AERIHGISTELATKRGVSIHHVFEEFEKALAKTQ-YIVGQNIGFDIHIMGAEFYRYGVSS 120

Query: 117 PLDPSRIIDT---LSIARRKHPSSR------NDLNSLCKR-YGITISHRSKHGALLDSHL 166
            L    ++DT   L+    + P  R       +L  L +  +G   +    H A  D   
Sbjct: 121 VLSKLPVLDTCTELTAELCRIPGGRAGKFKYPNLTELHEFLFGTPFA--EAHNATADVEA 178

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP-----------NISLLKRDKPLFTR 215
            +  + +++  G   +    + +     +EK   P            ++  K        
Sbjct: 179 TARCFFELLRRGEGFSPSQVSEQAIRLIQEKYLSPIPLWGLHHINLKVASEKLKSKEDIS 238

Query: 216 ITKEELDEHDKTIQT 230
           ++  EL E+   +Q+
Sbjct: 239 LSATELTENLTLLQS 253


>gi|298252322|ref|ZP_06976124.1| Exonuclease RNase T and DNA polymerase III [Ktedonobacter racemifer
           DSM 44963]
 gi|297545742|gb|EFH79611.1| Exonuclease RNase T and DNA polymerase III [Ktedonobacter racemifer
           DSM 44963]
          Length = 471

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 16/168 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTGLDS+ D+II+  AV   +          ++ P     S  A ++HGIT+  L 
Sbjct: 27  FDSETTGLDSE-DQIIQ-WAVCNQEGQLLG---SGYIKPT-VPISEGAFEIHGITEAQLA 80

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDPSRIIDTLSIA 130
           + P F+  +    D         + +N+ FD+G + +  +        D  +    + + 
Sbjct: 81  NAPLFAESWPTIRDLLTASGKTVVIYNSNFDIGMLWSSARAHGIPMRWDEIKAECAMQLF 140

Query: 131 RRKHPSSR--------NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              +              L +      IT+     H A  D+   + +
Sbjct: 141 ASFYGEYHEYWGSYTWQKLTTAISHLNITVPGE-AHNAEHDAAATAHI 187


>gi|289664483|ref|ZP_06486064.1| exonuclease, RNase T and DNA polymerase III [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 322

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 62/172 (36%), Gaps = 19/172 (11%)

Query: 4   KNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            N +  I  D ETTGL+    D ++EI  V   D +         +CP      PEA  +
Sbjct: 45  TNSVPPIFVDTETTGLNQDGRDEVLEIAIVNA-DGTIL---LNTLVCPARNTAWPEAQAI 100

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI+ + +   PS+S +  +            + +NA FD  F                 
Sbjct: 101 HGISPQDVAGAPSWSGLLPKIASICA--GKTVVFYNAPFDTSFFPTRF---------FPN 149

Query: 123 IIDTLSIARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +   +      +P       L+      G T S  + H AL D+     +++
Sbjct: 150 VECAMRSYSEVNPGHSGWVKLSDAASESGYT-STGAFHRALEDALACRHIWL 200


>gi|241205541|ref|YP_002976637.1| exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240859431|gb|ACS57098.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 199

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 7/151 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           ++ I  D ET   + +      +G +  ++  +  R  +  + P   + S   + +HGI 
Sbjct: 4   LKTIAIDFETA--NEQRGSACSVG-LAWIEDGRVTRVEERLIRPREMRFSGMNIAIHGIR 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D P F  +  EF +  +   A  IAHNA FD     A L  + +        + +
Sbjct: 61  PEHVEDAPEFPEVMDEFHE--DISGATMIAHNAAFDFSVWRASLD-LYRQSYPELTYLCS 117

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRS 156
           L +A+R  P    + LN + +  G+   H +
Sbjct: 118 LKMAQRIWPHFLSHRLNLIAEHLGLRFVHHN 148


>gi|296114717|ref|ZP_06833368.1| DNA polymerase III subunit epsilon [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978751|gb|EFG85478.1| DNA polymerase III subunit epsilon [Gluconacetobacter hansenii ATCC
           23769]
          Length = 298

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 66/170 (38%), Gaps = 20/170 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R I+ D+ETTGLD + D IIE+  V        +       F+    P  +  S E  KL
Sbjct: 40  RAILVDVETTGLDCEKDEIIELAMVPFFYTHFGEIVGIGAPFEGLRKP-AKPISSEVTKL 98

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI +  ++ K + +    E   F     +  +AHNA FD  F+         +P     
Sbjct: 99  TGIDNAMVEGK-AINP--DEVAAFAGT--SLVVAHNAAFDRRFLERFCHAFAGNP----- 148

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              ++S  +        + L  L    G    +  KH A+ D +   ++ 
Sbjct: 149 WACSMSEVKWFDEGFESSKLALLAMSSGF---YYDKHRAVHDCYATLELL 195


>gi|304389634|ref|ZP_07371596.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327187|gb|EFL94423.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 240

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 18/176 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+ +  DRI  +  +  ++   T+      + P G    P A +++G+TDE+L+
Sbjct: 19  FDTETTGVFTSRDRIATVSLIRRING--TDSPRYWIINP-GVPMPPAAGRVNGLTDEYLQ 75

Query: 72  D-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP------ 120
                 +     +     +    +    +  N  FD   + AEL R N   L        
Sbjct: 76  AHGVDPRVGLEEVTGIIAETMR-RGVPVVGFNVTFDFAILEAELARHNLPTLRQRLEGSV 134

Query: 121 SRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             I+D L + R   ++   + +L S+C  Y + +     H A  D     D+   M
Sbjct: 135 GPIVDPLVLDRILDRYRKGKRNLASVCTAYDLPLR-EDFHNAQADVSATLDLLGAM 189


>gi|189463165|ref|ZP_03011950.1| hypothetical protein BACCOP_03876 [Bacteroides coprocola DSM 17136]
 gi|189430144|gb|EDU99128.1| hypothetical protein BACCOP_03876 [Bacteroides coprocola DSM 17136]
          Length = 163

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   +     +  +G V + D    +R F   + P     +    ++HG+T  
Sbjct: 4   FAAIDFETA--NQCRSSVCSVGVVIVHDGMIVDR-FYSLIQPTPNYYTHWTTEIHGLTHN 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              + P F  ++ +       +    +AHN+ FD G + +  +    +         TL 
Sbjct: 61  DTDNAPIFPEVWKQINPLI--KGLPLVAHNSPFDEGCLRSVFKTYEMEY-PEYPFYCTLK 117

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRS 156
            +R+  P    + L+++ +     +++  
Sbjct: 118 ASRKLQPELPNHRLDTVAETCNFNLTNHH 146


>gi|289706337|ref|ZP_06502695.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Micrococcus luteus SK58]
 gi|289556832|gb|EFD50165.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Micrococcus luteus SK58]
          Length = 371

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 10/153 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN--GRKNSPEALKLHGIT 66
               D ET   +        +GAV + D    +R  +  + P     +  P  +++HGIT
Sbjct: 6   FTAIDFETA--NGFRGSPCAVGAVRVRDGVMVDRA-EWLIRPPVGFDRFDPRNVRIHGIT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ + D P F+ ++ E  DF         AHNA FDVG I + L+   +D +     + T
Sbjct: 63  EDRVLDAPRFAQVYDELADFVGTD--VLAAHNAGFDVGVIESGLEVSGRD-VPGLEFVCT 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
           L +ARR +      L S  +  G   +    H 
Sbjct: 120 LVLARRVYDLPSYALPSAAREAG--FTPGRHHD 150


>gi|311113524|ref|YP_003984746.1| exonuclease [Rothia dentocariosa ATCC 17931]
 gi|310945018|gb|ADP41312.1| exonuclease [Rothia dentocariosa ATCC 17931]
          Length = 409

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 59/169 (34%), Gaps = 15/169 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET           +I  +++ +    +R    +L P       E   LHGI+  
Sbjct: 242 YVAVDFETA-NSVSGASACQIALIKVQNGLVVDR-LVSYLKPPAELRRFEFTHLHGISAR 299

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P++  +      F         AHNA FD           N   + P+    T  
Sbjct: 300 TVRVAPTWVEVLPAITAFIGSF--PVYAHNASFDSKVWQELDDYYNVHTV-PTHFFCTYR 356

Query: 129 IARRKHPS-SRNDLNSLCK----RYGITISHRSKHGALLDSHLLSDVYI 172
           +A++  P    + L ++ K    ++ +       H A  D+   + + +
Sbjct: 357 MAKKALPHLENHKLPTVIKACAPKFKL-----KHHKADSDAEACAYIVL 400


>gi|167842269|ref|ZP_02468953.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
           thailandensis MSMB43]
          Length = 292

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 12/164 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD     I+EI  ++       +      + P       +A  +HGITD 
Sbjct: 129 PLFIDTETTGLD-FQAEIVEIAILDRAGALLLD----TLVKP-AMPIPADATAIHGITDA 182

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P ++S+  +  +    +   WIAH+A FD   +    +R     +   R+  T+ 
Sbjct: 183 HVAGAPGWASVGPQVAELLAGR--LWIAHHAAFDERLLLQTSRRHAVK-VPTFRLGCTIE 239

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +        R  L       G   + R  H A  D+     + +
Sbjct: 240 LLGD-WAGRRLSLADAATMLGAAPTTR--HRARADAEQCRQIVL 280


>gi|163814599|ref|ZP_02205988.1| hypothetical protein COPEUT_00750 [Coprococcus eutactus ATCC 27759]
 gi|158450234|gb|EDP27229.1| hypothetical protein COPEUT_00750 [Coprococcus eutactus ATCC 27759]
          Length = 227

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 26/183 (14%)

Query: 7   MRKIVFDIETTGLDSKN--------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           MR +  D E   +DS++          IIEIGAV+L D      +F+ ++ P     +  
Sbjct: 9   MRYVFVDFEMNLIDSEHKQEKKICKSEIIEIGAVKLDDEYNEIDSFKSYVKPAYGNMASR 68

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI----------NA 108
            +KL GITDE L+  PS+      F ++  + +  + A  ++ D+  +          + 
Sbjct: 69  IIKLTGITDEMLETAPSYEDAVGRFIEWCADADVIY-AW-SENDLRQLRGETRLKQYTHP 126

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           EL+R+     D  +       AR    S R  L+      G      ++H AL D+   +
Sbjct: 127 ELERVFAKWQDFQK-----EYARMIGTSRRISLSDAVFYLG-ENFQGAEHDALWDARNTA 180

Query: 169 DVY 171
           +V+
Sbjct: 181 EVF 183


>gi|146300607|ref|YP_001195198.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
 gi|146155025|gb|ABQ05879.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
          Length = 198

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 14/172 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +V   ET+GL+   D I+ +GA  ++D S   +               + L+ +G+++
Sbjct: 29  KFVVLSTETSGLNPNKDVILSLGAFSVIDDSIIIKE-----NFEAVLLQYKFLEDNGLSN 83

Query: 68  EFLKD----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR- 122
           EF+ +    K   +     F +F    NA  + H+  FD+  +NA L+R++   L     
Sbjct: 84  EFIIESKMTKMPEAEALEAFINFLG--NAVLVGHHINFDIEMLNAALERLDCGRLKNEAL 141

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ID +          +  LN LC+ Y I  S R+   A  D++ +  +++K+
Sbjct: 142 DIDVMYRKLTDINDKQFSLNDLCEIYKIPKSDRNS-SA-EDAYKIGLLFLKL 191


>gi|330719279|ref|ZP_08313879.1| DNA polymerase III, epsilon subunit [Leuconostoc fallax KCTC 3537]
          Length = 177

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 7/151 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + +    + I    + D    +  F   + P     S   + +HGI 
Sbjct: 1   MNFIAMDFETA--NHERHSAVSIALAIVRDDKIVDE-FYSLIRPETY-FSRRNVAIHGIE 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  + D P FS ++      F  ++   +AHNA FD G +   L     +      ++DT
Sbjct: 57  EHDVLDAPKFSELWPVIQPLF-TEDKLVVAHNAPFDNGVLKGTLNYYGLEE-PHYMLLDT 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRS 156
           +  +R+  PS + + LN++ +  GI++ H  
Sbjct: 115 VRTSRQFFPSFNNHKLNTVAENLGISLVHHH 145


>gi|297566007|ref|YP_003684979.1| exonuclease RNase T and DNA polymerase III [Meiothermus silvanus
           DSM 9946]
 gi|296850456|gb|ADH63471.1| Exonuclease RNase T and DNA polymerase III [Meiothermus silvanus
           DSM 9946]
          Length = 203

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 76/185 (41%), Gaps = 18/185 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRK-NSPEA 59
           +   ++     D+ET+GL  + D+I+ +G V +          F   + P+     S E 
Sbjct: 12  LPWEEVVYWALDLETSGLKPQ-DQILSVGMVPIRKGVIRYGEHFYSLVRPHRFDTLSLEG 70

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           L+ H I    L++ P    +  E      E     + H+A  DV F+     R +    +
Sbjct: 71  LRAHQIRPFELREAPPLCQVLREVHQRLKEG--VLLVHHALVDVAFLRRAYARCDLVWPE 128

Query: 120 PSRIIDTLSIARRKHPSSRNDL---------NSLCK-RYGITISHRSKHGALLDSHLLSD 169
           P +++DT+ +  +     R  L          +L K R  + +   + H AL D+   ++
Sbjct: 129 P-QVVDTVKLLHKL--GQRRALLEPHPETPPENLAKARAFLDLPPYTAHHALTDALATAE 185

Query: 170 VYIKM 174
           +++ +
Sbjct: 186 IFLVL 190


>gi|218672255|ref|ZP_03521924.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli GR56]
          Length = 197

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 7/144 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I  D ET   + +      +G +  ++  +  R  +  + P   + S   + +HGI 
Sbjct: 1   MKTIAIDFETA--NEQRGSACSVG-LAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIR 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E ++D P F  +  EF D  + + A  IAHNA FD     A L  + +        + +
Sbjct: 58  PEDVEDAPEFPEVMDEFHD--DFRGATMIAHNAAFDFSVWRASLD-LYRQSYPELTYLCS 114

Query: 127 LSIARRKHPS-SRNDLNSLCKRYG 149
           L +A+R  P    + LN + +  G
Sbjct: 115 LKMAQRIWPHFLSHRLNLIAEHLG 138


>gi|220913055|ref|YP_002488364.1| exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
 gi|219859933|gb|ACL40275.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
          Length = 336

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 10/168 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLHGIT 66
               D ET   +        +G  ++    K        + P    +  +   +++HGIT
Sbjct: 5   FTAIDFETA--NGFRGSPCAVGLTKVR-GGKVVEEAAWLMRPPAGHDHFDYHNVRIHGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +  +  F  +F E   F  +      AHNA FD+G I + L+     P      + T
Sbjct: 62  AADVAGRSRFGDLFPEIGAFIGDD--VLAAHNAAFDLGVIRSALEVSGL-PGPAYDYVCT 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + ++RR +    N L    +  G+ +     H A  D+   + + I +
Sbjct: 119 VMLSRRCYSLVSNSLPFAAEEAGVPL--LRHHDAAEDARACAGILIDI 164


>gi|88601936|ref|YP_502114.1| exonuclease [Methanospirillum hungatei JF-1]
 gi|88187398|gb|ABD40395.1| Exonuclease [Methanospirillum hungatei JF-1]
          Length = 215

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 73/191 (38%), Gaps = 28/191 (14%)

Query: 7   MRKIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           M+ ++FD E+TGL  +            R++++  +     +         + P+G    
Sbjct: 1   MKYLIFDTESTGLPREEKDPFHYPEYWPRMVQLAWILTDGETIITEE-NYLIYPDGFVIP 59

Query: 57  PEALKLHGITDEFLKD--KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             ++++HGIT+E  ++  KP    + S F +   + +   + HN  FD   + +E  R  
Sbjct: 60  SSSMEIHGITNERAREEGKPVL-EVLSVFSESIKQAD-VLVGHNVSFDRSIVTSEYSRAK 117

Query: 115 KD-PLDPSRIIDTL----SIARRKHPSSRN-----DLNSLCKR-YGITISHRSKHGALLD 163
            + P+       T+     + +      R       L+ L +  +     H   H A  D
Sbjct: 118 LNAPILKLPYHCTMKTSTEVCKLPAKGGRRGYKWPSLSELHQFLFEEPFEH--AHDASAD 175

Query: 164 SHLLSDVYIKM 174
                  Y+++
Sbjct: 176 VRACMRCYLEL 186


>gi|328480154|gb|EGF49106.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 106

 Score = 95.7 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 9   KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             V D+ETTG   K  DR+I+ G   L+ + K  +T    + P+ R       +L GI+ 
Sbjct: 7   FAVVDLETTGTSVKDGDRMIQFGC-ALVRHGKIIQTISQMINPD-RSVPQTIQRLTGISP 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           E L   P F  +         +    ++AHN  FD  F+NAE +
Sbjct: 65  ERLVAAPYFDEVAPALHQVLTK--TVFVAHNVNFDYPFLNAEFE 106


>gi|239917363|ref|YP_002956921.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Micrococcus luteus NCTC 2665]
 gi|281414154|ref|ZP_06245896.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Micrococcus luteus NCTC 2665]
 gi|239838570|gb|ACS30367.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Micrococcus luteus NCTC 2665]
          Length = 381

 Score = 95.7 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 10/153 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN--GRKNSPEALKLHGIT 66
               D ET   +        +GAV + D    +R  +  + P     +  P  +++HGIT
Sbjct: 13  FTAIDFETA--NGFRGSPCAVGAVRVRDGVMVDRA-EWLIRPPVGFDRFDPRNVRIHGIT 69

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ + D P F+ ++ E  DF         AHNA FDVG I + L+   +D +     + T
Sbjct: 70  EDRVLDAPRFAQVYDELADFVGTD--VLAAHNAGFDVGVIESGLEVSGRD-VPGLEFVCT 126

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
           L +ARR +      L S  +  G   +    H 
Sbjct: 127 LVLARRVYDLPSYALPSAAREAG--FTPGRHHD 157


>gi|116070417|ref|ZP_01467686.1| Exonuclease [Synechococcus sp. BL107]
 gi|116065822|gb|EAU71579.1| Exonuclease [Synechococcus sp. BL107]
          Length = 285

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 14/167 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGL+ +N   +E+GA+     S+     Q FL P        A  ++ I    
Sbjct: 57  LIIDTETTGLEPENHCCVEVGAILFDVQSRAVLAQQSFLLPAETN---AAEPINRIPAAV 113

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +    +      F +  +  +   +AHNA FD  +         + P      + ++  
Sbjct: 114 TRLSQPWKEALLWFQNLLDAAD-VLVAHNAAFDRQWFGR-----GELPAVTQPWLCSMED 167

Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R    +   SR  +  L   YG+ +   + H AL D   L++V+ +
Sbjct: 168 MRWPADRQLRSRPSVRDLALAYGVPVW--AAHRALTDCIYLAEVFAR 212


>gi|254453316|ref|ZP_05066753.1| exonuclease [Octadecabacter antarcticus 238]
 gi|198267722|gb|EDY91992.1| exonuclease [Octadecabacter antarcticus 238]
          Length = 206

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 15/172 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
             R I  D+ET G       I +IG   + +     +T+ V + P          +LHGI
Sbjct: 18  PFRFIALDVETAGKTIGG--ICQIGLCFVSNTGAV-QTYSVLIDPE-EPFEQFNTELHGI 73

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + +     F  +++  +D  N  N      ++ FD   + ++  R    P+  S   +
Sbjct: 74  SADTVAGAGIFPMVYAALFDLLNTHNLI---QHSTFDEKALTSDCARYGL-PMITSHWTN 129

Query: 126 TLSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++++AR+  P+ +    + L +L K  G+   H   H A  D+   + V ++
Sbjct: 130 SVTVARQAWPALKGAGGHGLANLKKHLGLEFHH---HDAGEDARASATVILR 178


>gi|305682188|ref|ZP_07404992.1| exonuclease [Corynebacterium matruchotii ATCC 14266]
 gi|305658661|gb|EFM48164.1| exonuclease [Corynebacterium matruchotii ATCC 14266]
          Length = 230

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 15/172 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N ++ + FD+ETT  +    RI+    V +          Q FL   G      A K+HG
Sbjct: 9   NPLKVLSFDLETTSANPFEARIVTSALVHIDSGG---AHPQEFLADPGVPIPEAATKVHG 65

Query: 65  ITDEFLKDKP-SFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           IT E+ ++     + + +E      +        I +NA +D+  +++    +    L  
Sbjct: 66  ITTEYAREHGSPHADVLAETIAAIRKAWTDGYTLIVYNASYDLTVLHS----LEPGFLIT 121

Query: 121 SRIIDTLSIARRKHP--SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             + D   + +   P    +  L +LC+ Y + + +   H A  D+   + +
Sbjct: 122 GPVYDPYVMDKLLDPYRRGKRTLTALCEEYQVRLEN--AHEATSDALAAARI 171


>gi|78186412|ref|YP_374455.1| exonuclease [Chlorobium luteolum DSM 273]
 gi|78166314|gb|ABB23412.1| Exonuclease [Chlorobium luteolum DSM 273]
          Length = 197

 Score = 95.3 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 74/188 (39%), Gaps = 21/188 (11%)

Query: 7   MRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           M+K++ FD+ETTG+D     II+   +  ++      +F++ + P  G     EAL + G
Sbjct: 1   MKKVLWFDLETTGIDPDRHGIIQFAGLAEIEG-VVAESFEIKMQPHEGAMIEDEALAVSG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--------IAHNAKFDVGFINAELQR---I 113
            + E +      +  +     F     + +          +N +FD+ F++   +R    
Sbjct: 60  FSREQIASFTPHAEAYKAIDGFLARHVSRFERNDKFYPAGYNVRFDLDFLSRMFRRYDQY 119

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSR-----NDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                   R +D   I        R     + L ++C+  G+ + +   H AL D     
Sbjct: 120 GLGSFINWRSLDPQPILNIMEYMGRLSLPNHKLQTVCEHLGVRLEN--AHDALSDIKATR 177

Query: 169 DVYIKMMV 176
           ++   +M 
Sbjct: 178 ELMELLME 185


>gi|237785812|ref|YP_002906517.1| putative DNA polymerase III subunit epsilon [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758724|gb|ACR17974.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 256

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 13/181 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNS-PEA 59
               ++  +  D+ETTGLD+  DR++ +G V +   +    T     +  +    S  ++
Sbjct: 57  TPLKELPLLAVDVETTGLDADRDRLLSVGMVAINGRAIPLATADHWLVRYHEGDVSVGQS 116

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGITD  L++  S   I ++  +         +AH A  +  FI+   +R    P  
Sbjct: 117 ATIHGITDSQLENGRSLLDILTDVVN--AAAGRALLAHLALIEHDFISTACERAVGVPWS 174

Query: 120 PSRIIDTLSIARR------KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           P  ++DT+ + RR      + P      L +   RY   +     H AL+D+   +++Y+
Sbjct: 175 PLCVVDTMDLERRSAVSFGRRPGRGEVRLMN--ARYSRGLPSYHNHNALVDALACAELYL 232

Query: 173 K 173
            
Sbjct: 233 A 233


>gi|224029725|gb|ACN33938.1| unknown [Zea mays]
          Length = 457

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 80/214 (37%), Gaps = 15/214 (7%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEAL-KL 62
           ++   +  D+ET    +    ++E GAV +      +  +F   + P      P+   + 
Sbjct: 11  DREEIVFLDVET---STPPCVLLEFGAVVVCSRRLVDVSSFATLVRPANLDALPDPTARS 67

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPS 121
           +GIT   L D P F  +    +D  + +   W  HN   FD   I      I + P  P 
Sbjct: 68  NGITRGTLADAPPFRDVADMVYDVLHGR--VWAGHNIVHFDSMIIMDAFAEIGRPPPQPK 125

Query: 122 RIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMMVG 177
            +IDTL +  +     +    L SL   +G+    + +H +L D  +  DV+     ++ 
Sbjct: 126 AMIDTLPLLTQCFGPRAGDMKLASLANYFGL---GKQRHRSLDDVKMNIDVFKNCATVLF 182

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             +   G +    +       T+    +     P
Sbjct: 183 LEESLRGVRVPTVQNMSSGGATIRTQGITSDPAP 216


>gi|33861178|ref|NP_892739.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33639910|emb|CAE19080.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 270

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 20/221 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D ETTGLD   D IIE+G +     +K+  +   FL P    +S EA  ++GI+ E
Sbjct: 49  ILILDTETTGLDENKDEIIEVGCILFNVNTKSVLSQVSFLFP---VSSNEAEHVNGISAE 105

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               K  +    + F    +  +   +AHN +FD  +         + P    + I +L 
Sbjct: 106 VTNIKQPWEDGLNFFLKLVDCSDL-IVAHNVEFDKKWFGK-----GRLPKLEKKWICSLE 159

Query: 129 ---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------MMVGGS 179
               + +K+  +R  +  L   + I +   S H AL D   +S+V+ K      ++   +
Sbjct: 160 DINWSFQKNLKNRPSVTDLALSFSIPVW--SLHRALSDCFYISEVFKKCENLEELLCKAT 217

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           +  F +K       +   K    +    +      ++T EE
Sbjct: 218 EPRFLYKALVSYEERSLAKKAGFLWNNPKQGAWAKKLTVEE 258


>gi|150007459|ref|YP_001302202.1| hypothetical protein BDI_0810 [Parabacteroides distasonis ATCC
           8503]
 gi|298375435|ref|ZP_06985392.1| exonuclease [Bacteroides sp. 3_1_19]
 gi|301310540|ref|ZP_07216479.1| exonuclease [Bacteroides sp. 20_3]
 gi|149935883|gb|ABR42580.1| hypothetical protein BDI_0810 [Parabacteroides distasonis ATCC
           8503]
 gi|298267935|gb|EFI09591.1| exonuclease [Bacteroides sp. 3_1_19]
 gi|300832114|gb|EFK62745.1| exonuclease [Bacteroides sp. 20_3]
          Length = 192

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 78/186 (41%), Gaps = 19/186 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKLHGI 65
           M+ + FD+ETTG+    + + +I    ++D   T  +F   +CP+ + +   EAL++  +
Sbjct: 1   MKLLFFDLETTGIKYWRNGVHQISGEIVIDG-VTKESFNFNVCPHPQCEIEEEALRICNV 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNE--------QNAEWIAHNAK-FDVGFINAELQRINKD 116
           + E ++  P    ++ +F +  ++             + +N   FD  F+ A   +   +
Sbjct: 60  SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQNGDN 119

Query: 117 PLDPSRII--------DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                  +         T  + R++H  +     ++ +  GI I     H A  D  L  
Sbjct: 120 YFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLTK 179

Query: 169 DVYIKM 174
           ++Y ++
Sbjct: 180 EIYNRI 185


>gi|123965921|ref|YP_001011002.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9515]
 gi|123200287|gb|ABM71895.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9515]
          Length = 270

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 20/222 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++ D ETTGLD   D IIEIG +     SK+  +   FL P    +S EA  ++GI+ 
Sbjct: 48  KILILDTETTGLDENKDEIIEIGCILFHVTSKSVLSQVSFLFP---VSSNEAEHVNGISA 104

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E    K  +    + F    +  +   +AHN +FD  +         + P      I +L
Sbjct: 105 EVSNIKQPWEEGLNFFLKLVDCADL-IVAHNVEFDKKWFGK-----GRLPNLEKNWICSL 158

Query: 128 S---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------MMVGG 178
                + +K+  +R  +  L   + I +   S H AL D   +S+V+ K      +++  
Sbjct: 159 EDINWSFQKNLKNRPSVTDLALSFSIPVW--SLHRALSDCFYISEVFKKCENLEELLIKA 216

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           ++  F +K       +   K          +     ++T EE
Sbjct: 217 TEPRFLYKALVTYSERSLAKKAGFRWNNPAEGAWARKLTVEE 258


>gi|85713183|ref|ZP_01044214.1| 3'-5' exonuclease [Idiomarina baltica OS145]
 gi|85693007|gb|EAQ30974.1| 3'-5' exonuclease [Idiomarina baltica OS145]
          Length = 217

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 66/180 (36%), Gaps = 16/180 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALK 61
             +   I  DIETTGLD  ND+I+ I  V +           +  F          ++  
Sbjct: 24  WQEHTYIAIDIETTGLDPINDQILSIAWVPIKPPMILIGEAQYHEFCVDPDVDL-QQSPT 82

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG+T   L        +  +  D         + H+   D  ++       N    +P 
Sbjct: 83  IHGLTKAQLSSGGDVKKVLKDLED--KLYGCVMVCHHRSLDWSYLRDNRLTENLH-FEPL 139

Query: 122 RIIDTLSIARRKHP-----SSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + DTLS  + K          N    L +   R+G+ I   + H A+ D+   +++++ 
Sbjct: 140 GVFDTLSFEKNKMSFDNEFQLHNSSLTLAACRTRHGLPIY--TSHHAMDDAIACAELFLA 197


>gi|313906420|ref|ZP_07839758.1| Exonuclease RNase T and DNA polymerase III [Eubacterium
           cellulosolvens 6]
 gi|313468755|gb|EFR64119.1| Exonuclease RNase T and DNA polymerase III [Eubacterium
           cellulosolvens 6]
          Length = 221

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 69/187 (36%), Gaps = 27/187 (14%)

Query: 7   MRKIVFDIETTGLDSKND--RI-----IEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPE 58
           M+ IV D+E   +  K++  RI     IEIGAV L D  +    F+ ++ P      +  
Sbjct: 1   MKHIVVDLEMNSISRKSEARRICNLETIEIGAVMLDDDLQEISCFRTYVKPEYADGIAGN 60

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFI----------- 106
              L GITD+ +++ P F+     F ++          H     D   I           
Sbjct: 61  ITILTGITDDMVENAPKFNEALRMFTNWCLGTGDAVTIHAWSDSDYNQIAKEIVLKRYDV 120

Query: 107 -NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
              E + +     D  +  D+     R+       L       GI  + R  H AL D+ 
Sbjct: 121 SAEEAELLGNAWSDFQQEFDSHLGFERQM-----SLKMALNMAGIDFTGRE-HDALDDAR 174

Query: 166 LLSDVYI 172
             +++ +
Sbjct: 175 NTAELLL 181


>gi|121582521|ref|YP_974053.1| exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42]
 gi|120608579|gb|ABM44318.1| Exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42]
          Length = 302

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 66/179 (36%), Gaps = 26/179 (14%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D ETTGL     D ++E+  V+       +      + P+     PEA  +HGIT
Sbjct: 131 RTVYMDTETTGLYGGCGDELLELALVDDAGNVLLD----SLVKPDRHTEWPEAQAIHGIT 186

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              + + PS  S+         +     + +NA FD+ F+   ++     P+  ++ +  
Sbjct: 187 PADVMNAPSLESLLPRLLAVIEDAGT-LVIYNAGFDLAFLPDAVR-----PVASNKALCA 240

Query: 127 L--------SIARRKHPSSRNDLNSLCKRYGITISHR---SKHGALLDSHLLSDVYIKM 174
           +            R+     + L       G    HR   S H A  D+     V+  +
Sbjct: 241 MHAFSLHAGEWDERRQSYRWHKLGVAACAAG----HRWEGSAHRARADALATRSVWHWL 295


>gi|213420150|ref|ZP_03353216.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 155

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 12/141 (8%)

Query: 52  GRKNSPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDV 103
           G    PEAL  +GI         + +  +  +IF        +        +AHNA FD 
Sbjct: 7   GANLQPEALAFNGIDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDH 66

Query: 104 GFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            F+ A  +R  + ++P  P    DT +++       +  L+  C   G+       H AL
Sbjct: 67  SFMMAAAERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGEKAHSAL 124

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   + ++ +++    ++ 
Sbjct: 125 YDTERTAVLFCEIVNRWKRLG 145


>gi|261210981|ref|ZP_05925271.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
 gi|260839956|gb|EEX66556.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
          Length = 233

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 69/177 (38%), Gaps = 18/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+ + + I+ +G V         +  + +L    +  + +++ +HGIT   
Sbjct: 45  VALDFETTGLNPQQEAILSVGLVPFTTSRIALKEARYWLVKPTQPLAEQSVVIHGITHSE 104

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L    +   +  E       + A  + H    +  F+     ++  + L+   +IDTL +
Sbjct: 105 LSRAQAPDEVLRELIGALRGKIA--VVHFRHIEREFLQQATLQLWGEALEL-PLIDTLEV 161

Query: 130 ARRKHPSSRN-------------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R      R+              L     RYG+     S H AL D+   ++++  
Sbjct: 162 ERHILQQQRSFWQRVTGRPLPSLRLGQSRMRYGLP--SYSPHHALTDAIATAELFQA 216


>gi|126667590|ref|ZP_01738560.1| exonuclease [Marinobacter sp. ELB17]
 gi|126628016|gb|EAZ98643.1| exonuclease [Marinobacter sp. ELB17]
          Length = 232

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 78/195 (40%), Gaps = 10/195 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV D+ETTGL+   D++I IGAV + +     +  F + L           L +HGI 
Sbjct: 37  RLIVLDLETTGLNPAKDQMIAIGAVAINNNAMPLDDQFDLILRRPELDIRKTVL-IHGIG 95

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E L              D+ N      +A+++ FD  F+   L R      +    +D 
Sbjct: 96  PEALTAGHETEDALLHLLDWMN--GDPILAYHSAFDQKFLEKTL-RAELGYGENHIWLDV 152

Query: 127 LSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             +     P+    R  L++    +G+  S  ++H A  D+ + +++ +  +   +Q   
Sbjct: 153 AELMPAFFPTANKQRKGLDNWADTFGLQAS--ARHHAAADAMVTAELTLIALNKAAQQGI 210

Query: 184 GFKTNEDRFFKEEKK 198
                     + +++
Sbjct: 211 HTLAQLSDKLRYQRR 225


>gi|123968212|ref|YP_001009070.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. AS9601]
 gi|123198322|gb|ABM69963.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. AS9601]
          Length = 259

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 26/222 (11%)

Query: 2   IRKNKM--RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
             KNK   + ++ D ETTGLD   D +IEIG +      K   +   FL P    N+ EA
Sbjct: 29  TNKNKKIEKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFP---VNNNEA 85

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             ++GI+ E       +    + F    +  +   +AHN +FD  +         + P  
Sbjct: 86  EHVNGISAEVTNISQPWEDGLNFFLKLVDSSD-FIVAHNVEFDKKWFGK-----GRLPKL 139

Query: 120 PSRIIDTLS---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK--- 173
             + I +L     + +K   +R  +  L   + I + +   H AL D   LS+V+ K   
Sbjct: 140 NKKWICSLEDINWSFQKSLKTRPSVTDLALSFSIPVWN--LHRALSDCFYLSEVFKKCDN 197

Query: 174 ---MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
              +++  ++  F +K         E +++P  +  K + P+
Sbjct: 198 LEELLLKATEPRFLYKA----LVSYEDRSLPKNAGFKWNSPV 235


>gi|325271479|ref|ZP_08137997.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. TJI-51]
 gi|324103369|gb|EGC00698.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. TJI-51]
          Length = 236

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 84/200 (42%), Gaps = 12/200 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQ-VFLCPNGRKNSPEALK 61
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+     P  + N   ++ 
Sbjct: 36  LREQRWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLQRPLLKTN--ASVL 93

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG+    L      +    +  DF    ++  +A +A FD   +   L+      L  S
Sbjct: 94  IHGLGPSALAAGCEPAEALLDLLDFIG--DSPVLAFHAPFDQRMLARALKESLGYRL-QS 150

Query: 122 RIIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +D   +A   +P +      L+    R+G+ +  R  H A  D+ + +++ + +    
Sbjct: 151 PFLDVAELAPMLNPDTVLREAGLDDWVARFGLQVEER--HHASADAQVTAELVLILFSQA 208

Query: 179 SQINFGFKTNEDRFFKEEKK 198
            +         ++  +  ++
Sbjct: 209 RRQQLDSPLQLEQRLRGWRR 228


>gi|308179139|ref|YP_003918545.1| exonuclease [Arthrobacter arilaitensis Re117]
 gi|307746602|emb|CBT77574.1| putative exonuclease [Arthrobacter arilaitensis Re117]
          Length = 467

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 12/171 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHG 64
           M     D ET   + K   +  +G  ++ +    ++     + P     +     + +H 
Sbjct: 1   MDFTAIDFETA--NGKRASVCAVGMTKVRNGKIIDQA-SWLIKPPHGFTTFADRNIAIHK 57

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+  + + PS++   +   DF    N   +AH A FD        +    D       +
Sbjct: 58  ITEADVVNAPSWTESAARIRDFVG--NDIVVAHYATFDKSVWRQACEWSGVD-FGDFHWL 114

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKM 174
            +  +AR         L ++    GI  + H   H A  D+ + + + + +
Sbjct: 115 CSRDLARAHLGLQDCSLPTVADSLGIKGLDH---HNAASDASVCAQIVLAI 162


>gi|257467741|ref|ZP_05631837.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium ulcerans
           ATCC 49185]
 gi|317062034|ref|ZP_07926519.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
 gi|313687710|gb|EFS24545.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
          Length = 186

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 23/188 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGI 65
           M+ +  D ET G+  ++  I   G V++    +    F  ++ P  G + + EALK+ G 
Sbjct: 1   MKILFVDTETGGITERSALIQLSGIVQI--GKEVAEEFNFYIKPFPGSEVTDEALKIQGR 58

Query: 66  TDEFLKDKPSFSSIFSEFWDFF-------NEQNAEWI-AHNAKFDVGFINAELQRINKD- 116
           T E ++   S   +F +F           N+++   +  +N +FD+  IN  L+R  +  
Sbjct: 59  TREEVETYDSEEEVFIKFMKILNKHIDKYNKEDKFLVGGYNVRFDIDVINRFLKRNGEKY 118

Query: 117 --------PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                    LDP + I  L + ++      N L + C  +GI +     H +L D     
Sbjct: 119 LFSYIQATTLDPLQWIAALQLLKKIPVLKDNKLETWCNHFGIEL---KAHDSLEDIKATK 175

Query: 169 DVYIKMMV 176
            +  KMM+
Sbjct: 176 ALTKKMML 183


>gi|127510985|ref|YP_001092182.1| DNA polymerase III subunit epsilon [Shewanella loihica PV-4]
 gi|126636280|gb|ABO21923.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica
           PV-4]
          Length = 239

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 27/192 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL+   D I+ IG V         NR     + P  +  + E++ +HGIT  
Sbjct: 50  LAMDFETTGLNVDKDDIVSIGTVPFTLRRIFLNRAQHWTVRPREQ-LAEESVIIHGITHS 108

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL- 127
            + D P  S+IF +  +         + H    +  F+   L R     ++   +IDT+ 
Sbjct: 109 DILDAPDLSAIFEQVLEQMA--GKIMVVHYQAIERLFLERALIRRIHQGIE-FPLIDTMA 165

Query: 128 ---SIARRKHPS----------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               I +R+H                L     RYG+       H AL D+   +++    
Sbjct: 166 LESEIQKRQHGGLLQRLKGDKPGSVRLGQSRSRYGLP--SYPPHNALTDAIATAELL--- 220

Query: 175 MVGGSQINFGFK 186
               +QI   F 
Sbjct: 221 ---QAQIAHHFD 229


>gi|187777769|ref|ZP_02994242.1| hypothetical protein CLOSPO_01361 [Clostridium sporogenes ATCC
           15579]
 gi|187774697|gb|EDU38499.1| hypothetical protein CLOSPO_01361 [Clostridium sporogenes ATCC
           15579]
          Length = 286

 Score = 95.3 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 77/198 (38%), Gaps = 23/198 (11%)

Query: 7   MRKIVFDIETTGLDSKN----------------DRIIEIGAVELLDYSKTNRTFQVFLCP 50
           M  I+FD+E     +                  D IIEIGA++L D  +   +F+V++ P
Sbjct: 1   MNYIIFDLEWNSFRNVKNHINYYKKFNKKTRFFDEIIEIGAMKLNDELECVDSFRVYIKP 60

Query: 51  NG-RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
              ++ +P  ++L GI +E LK    F      F ++   ++    +     D+  +   
Sbjct: 61  TIYKELNPRIIELTGINNEDLKYGFDFKKALKHFKEWIG-KDYILCSW-CDSDIKVLKKN 118

Query: 110 LQRINKDPLDPS---RIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           ++  N +    S     ID             R  L+ +     I  S  + H AL DS 
Sbjct: 119 IEYYNPNYKVESFLVPYIDIQKYCCEILEYGRRVSLHDIISTENIVPSTDTFHQALDDSK 178

Query: 166 LLSDVYIKMMVGGSQINF 183
           L  DV+ KM       N+
Sbjct: 179 LTVDVFRKMFHKCKIENY 196


>gi|315655203|ref|ZP_07908104.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315490458|gb|EFU80082.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 240

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 18/176 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+ +  DRI  +  +  ++   T+      + P G    P A +++G+TDE+L+
Sbjct: 19  FDTETTGVFTSRDRIATVSLIRRING--TDSPRYWIINP-GVPMPPAAGRVNGLTDEYLQ 75

Query: 72  D-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP------ 120
                 +     +     +    +    +  N  FD   + AEL R +   L        
Sbjct: 76  ANGVDPRVGLEEVAVIIAETMR-RGVPVVGFNVTFDFAILEAELARHDLPTLRQRLEGSV 134

Query: 121 SRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             I+D L + R   ++   + +L S+C  Y + +     H A  D     D+   M
Sbjct: 135 EPIVDPLVLDRILDRYRKGKRNLASVCTAYDLPLR-EDFHNAQADVSATLDLLGAM 189


>gi|78485464|ref|YP_391389.1| DNA polymerase III subunit epsilon [Thiomicrospira crunogena XCL-2]
 gi|78363750|gb|ABB41715.1| Exonuclease [Thiomicrospira crunogena XCL-2]
          Length = 207

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 9/175 (5%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQ-VFLCPNGRKNSPEALKL 62
           +    + FD ETTGL+ + DRI+ + A+++      T+      F+       S E++K+
Sbjct: 27  SDDEVVCFDCETTGLNPRKDRIVSLSAIKIRGNEVLTSEALNLTFV--QEAAISEESIKI 84

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H I +E  K   S       F  F   +    + +  +FDV  +N  ++      L  ++
Sbjct: 85  HWIRNEDTKAGLSEQEGIEAFLHFIGSR--PLVGYYLEFDVAMVNQIIKPWLGITLPNAQ 142

Query: 123 IIDTLSIARRKH---PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           I  +      K    P    DL        + + +  +H A  D+ + S +YIK+
Sbjct: 143 IEVSSRYYDYKEEIIPKKIIDLTFDAILKDLELPNLGQHDAFSDAFMTSLIYIKL 197


>gi|164688494|ref|ZP_02212522.1| hypothetical protein CLOBAR_02139 [Clostridium bartlettii DSM
           16795]
 gi|164602907|gb|EDQ96372.1| hypothetical protein CLOBAR_02139 [Clostridium bartlettii DSM
           16795]
          Length = 252

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 76/187 (40%), Gaps = 24/187 (12%)

Query: 7   MRKIVFDIETTGLDSKNDR--------------IIEIGAVELLDYSKTNRTFQVFLCPNG 52
           M  I+FD+E    +   DR              II+IGA++L        TF  ++    
Sbjct: 1   MNYIIFDLE---FNQGFDRLNNKTVSNAKCPFEIIQIGAIKLDSELNILDTFSSYIKSEI 57

Query: 53  -RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            +   P   K+ GIT+  LK+ PSF  ++ +F  F   +N+ +       D+  ++  + 
Sbjct: 58  YKDIHPFVKKMTGITNSNLKNAPSFKEVYEDFLKFIGIKNSIFGTW-GTNDLKELHRNIL 116

Query: 112 RINKDPLD-PSRIIDTLSIARRKH--PSSRN-DLNSLCKRYGITISHRSKHGALLDSHLL 167
             N    + P+  I+    A +    P  +   L +      +    +  H AL D++  
Sbjct: 117 FYNLSLENVPTMYINIQQHASKFFNNPVGKCIGLQNAISILQLE-QDKQYHNALNDAYYT 175

Query: 168 SDVYIKM 174
           + V+ K+
Sbjct: 176 ALVFQKI 182


>gi|93007423|ref|YP_579187.1| DNA polymerase III [Streptomyces phage mu1/6]
 gi|90568501|gb|ABD94180.1| DNA polymerase III [Streptomyces phage mu1/6]
          Length = 238

 Score = 94.9 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 13/162 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +  R   FD ETTG+D ++DRI+   AV L+   +   T   +L   G      A  
Sbjct: 1   MSWHTGRLCAFDTETTGVDVESDRIVT-AAVLLVGGGQPTET-HTWLADPGIDIPEAASA 58

Query: 62  LHGITDEFLK-DKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDP 117
           +HG+T E  + +      + SE      +Q       +A NA+FDV  ++ EL R     
Sbjct: 59  VHGVTSERARAEGRPAPMVVSEVAALLADQIVTGVPVVAMNARFDVTILDRELARHGLPS 118

Query: 118 LDPSR-----IIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152
           L         ++D L + +R  K+      L  L + YG+ +
Sbjct: 119 LAEQAGAEPLVLDPLVMDKRAEKYRRGGRKLVDLARHYGVQL 160


>gi|88802679|ref|ZP_01118206.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii
           23-P]
 gi|88781537|gb|EAR12715.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii
           23-P]
          Length = 1445

 Score = 94.9 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 69/190 (36%), Gaps = 25/190 (13%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL    +          R ++I                  + P+G     +
Sbjct: 2   YLIFDTETTGLPKTWNAPITNTENWPRCVQIAWQLHDKMGNIIEHNDFLIKPDGYNIPYD 61

Query: 59  ALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-D 116
           A ++HGI+ E  +++  S +     F +  + +    +  N  FD+  +  E  R+   D
Sbjct: 62  AERIHGISTELAEEQGISLAEGLLLFNEVLS-KTTFIVGQNLNFDLNIMGCEFYRLGVED 120

Query: 117 PLDPSRIIDTLSIARRKH------PSSRNDLNSLCK----RYGITISHRSKHGALLDSHL 166
            + P  I+DT +               +  L +L +     +G        H A  D   
Sbjct: 121 KMTPLPILDTCTEKTALMCQIPGGRGGKFKLPTLTELHQHLFGAGFGD--AHNATADVEA 178

Query: 167 LSDVYIKMMV 176
            +  +++++ 
Sbjct: 179 TTRCFLELIR 188


>gi|319426754|gb|ADV54828.1| Exonuclease RNase T and DNA polymerase III [Shewanella putrefaciens
           200]
          Length = 223

 Score = 94.9 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 13/169 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +  D+E TGLD   D+I+ IG V +          Q  L    R +  ++  
Sbjct: 30  MPVSEAPLMAMDLEMTGLDPLQDQILSIGLVPIEHGVIPLEGAQQKLV-QIRGSVGQSAT 88

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI D  L    +     + F      +    +AH++  D  F+  ++  I    +   
Sbjct: 89  IHGILDNHLVQAVTIEDAMAWFIA--KTRGRVLVAHHSPLDCRFLQQDILAIYHQAVFL- 145

Query: 122 RIIDTLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLD 163
             IDTL + +R+     +        L +  +RYG+ +   S H AL D
Sbjct: 146 PSIDTLMLEKRRLLRGHHAIKKGSLRLGACRERYGLPVY--SAHSALTD 192


>gi|77461407|ref|YP_350914.1| exonuclease [Pseudomonas fluorescens Pf0-1]
 gi|77385410|gb|ABA76923.1| putative DNA poymerase [Pseudomonas fluorescens Pf0-1]
          Length = 235

 Score = 94.9 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 80/199 (40%), Gaps = 10/199 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ETTGL+   DR++ IGAV + D +   ++ F+  L  +  K  P  L +
Sbjct: 36  LREQRWVVLDLETTGLNLSKDRVLSIGAVVIEDGAIDFSQQFERTLQCHELKLGPSVL-I 94

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+    +      +    E  +F    ++  +A +A FD   +   L+      L    
Sbjct: 95  HGLAPSAIAAGSEPTEALVELLEFIG--DSPVLAFHASFDQHMLGRALKEHLGHKLQTV- 151

Query: 123 IIDTLSIARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +D   IA    P +      L+     + + +  R  H A  D+   +++ + +     
Sbjct: 152 FLDVAQIAPLVCPQAHIREAGLDEWIDWFKLEVFER--HHASADALATAELALILFSRAR 209

Query: 180 QINFGFKTNEDRFFKEEKK 198
           Q       N  +   + K+
Sbjct: 210 QQQIHSPLNLQQRLSQWKR 228


>gi|120553834|ref|YP_958185.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
 gi|120323683|gb|ABM17998.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
          Length = 235

 Score = 94.9 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 10/171 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
            ++ R IV D+ETTGL++  D +I IGAV +       N  F + L         E + +
Sbjct: 36  LSRSRLIVLDLETTGLNASKDEVIAIGAVAIEGGVIHLNDQFDLILRRPELDI-RETVLI 94

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI  E L              ++ N      +A+++ FD  F+   L+      L P  
Sbjct: 95  HGIGPEALTQGYETQDALLYLLEWMN--GDPILAYHSAFDQKFLEKTLKSQLGYTL-PHV 151

Query: 123 IIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            +D   +     P        L+     +G+ IS R  H A  D+ + +++
Sbjct: 152 WMDVAELMPAFFPKATIKGRGLDDWADVFGLEISER--HHAAADALVTAEL 200


>gi|256390707|ref|YP_003112271.1| exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
 gi|256356933|gb|ACU70430.1| Exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
          Length = 295

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 65/161 (40%), Gaps = 18/161 (11%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++ R   FD ETTG D K+ RI+    V      K        + P G +   EA  +H
Sbjct: 67  WHRRRLAGFDTETTGRDPKSVRIVSAALVTSDGAEK-----AFLIDP-GVEIPAEATAIH 120

Query: 64  GITDEFLKDKP-----SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           GIT E+ ++       +   I               +  NA +D+  + AEL R    PL
Sbjct: 121 GITTEYAREHGTEPRRTLDEIADALAAELRA-GTPLVVFNAPYDLTLLEAELARNGLTPL 179

Query: 119 ----DPSRIIDTLSIARRK--HPSSRNDLNSLCKRYGITIS 153
                 + +ID L I R+          L + C+ YG+TI+
Sbjct: 180 ASRAPVAPVIDPLVIDRQMDKFRKGARTLEAQCQFYGVTIT 220


>gi|224372220|ref|YP_002606592.1| exonuclease family [Nautilia profundicola AmH]
 gi|223589909|gb|ACM93645.1| exonuclease family [Nautilia profundicola AmH]
          Length = 271

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 12/170 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD ETT +      II    V     S        FL P   K S EA ++H I  E +
Sbjct: 106 VFDTETTDI---YGYIISYAVVIQDMQSMDTEEIYDFLNPK-AKISEEAYEVHKIKQEDI 161

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDPSRIIDTLSI 129
           + KP+F+    EF   F+  +   + HN  +D G +  EL+R    P +    I DT+  
Sbjct: 162 EHKPTFAEKKDEFLQIFDNLDMV-VGHNVLYDFGVLKRELERAEHFPNIIDIPIFDTMYY 220

Query: 130 ARR---KHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +             L       +G   ++   H AL D  +   V+ +++
Sbjct: 221 SADVVVLEKKKMPRLEECVAFFFGKQNAN--YHDALEDVKMTLKVFNRLL 268


>gi|146293452|ref|YP_001183876.1| exonuclease, RNase T and DNA polymerase III [Shewanella
           putrefaciens CN-32]
 gi|145565142|gb|ABP76077.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
           putrefaciens CN-32]
          Length = 223

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 13/169 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++   +  D+E TGLD   D+I+ IG V +          Q  L    R +  ++  
Sbjct: 30  MPVSEAPLMAMDLEMTGLDPLQDQILSIGLVPIEHGVIPLEGAQQKLV-QIRGSVGQSAT 88

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI D  L    +     + F      +    +AH++  D  F+  ++  I    +   
Sbjct: 89  IHGILDNHLVQAVTIEDAMAWFIA--KTRGRVLVAHHSPLDCRFLQQDILAIYHQAVFL- 145

Query: 122 RIIDTLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLD 163
             IDTL + +R+     +        L +  +RYG+ +   S H AL D
Sbjct: 146 PSIDTLMLEKRRLLRGHHAIKEGSLRLGACRERYGLPVY--SAHSALTD 192


>gi|330812208|ref|YP_004356670.1| DNA polymerase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327380316|gb|AEA71666.1| putative DNA polymerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 235

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 84/206 (40%), Gaps = 10/206 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ETTGL+   D+++ IGAV + D +   ++ F+  L  + +K  P  L +
Sbjct: 36  LREQRWVVLDLETTGLNLNKDQVLSIGAVVIEDGAIDFSQQFERTLQCDKQKLGPSVL-I 94

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+    +      +     F +F    ++  +A +A FD   +   L+      L    
Sbjct: 95  HGLAPSAIAAGSDPAEALLAFMEFVG--DSPLLAFHAPFDSHMLGRALKDYLGYRL-QHS 151

Query: 123 IIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +D   +A    P +   ++ L+     + + +  R  H A  D+   +++ + +     
Sbjct: 152 FLDVADLAPMLCPQANLRKSGLDEWIDWFKLQVFDR--HNASADALATAELALILFSRAR 209

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISL 205
           Q       +  +     K+     SL
Sbjct: 210 QQQILSPLDLQQRLSHWKRRQQAPSL 235


>gi|297568688|ref|YP_003690032.1| Exonuclease RNase T and DNA polymerase III [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924603|gb|ADH85413.1| Exonuclease RNase T and DNA polymerase III [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 167

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 10/174 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET    S +        V ++ + +  + F   + P           +HG+T  
Sbjct: 4   FAAIDFETANYRSNSAC---AVGVVVVSHGRVVQRFYELIRPPSNWFV--FTHIHGLTWR 58

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +++ P+F  I+ +       Q     AHNA FD G + A     N  P      I T+ 
Sbjct: 59  DVRNAPAFGDIWPQIAKEMG-QVEFLAAHNASFDQGVMLACCAE-NALPPPAPPFICTVR 116

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++R++       L  +C++  I + H   H A  D+   + + +  +  G +  
Sbjct: 117 LSRKQWNIHPTKLPDVCRQLQIPLHH---HHAASDAEACAQIVLTALNQGWRPG 167


>gi|146309112|ref|YP_001189577.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
 gi|145577313|gb|ABP86845.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
          Length = 233

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 81/199 (40%), Gaps = 10/199 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
            ++ R +V D+ETTGL+ + D+++ IGAV + + +    + F+  L     + S   L +
Sbjct: 36  LHQQRFVVLDLETTGLNMRRDQVLAIGAVVIDNGAIDLAQQFERTLHLPDHQASASTL-I 94

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI    +            F +F     +  +A +A+FD   +   L++     L    
Sbjct: 95  HGIAPSEVARGVEPVEALLGFMEFVGS--SPVLAFHAEFDQRMLARALKQHLGYRL-QHS 151

Query: 123 IIDTLSIARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             D   IA    P SR     L+     +G+ +  R  H A  D+ + +++ + +     
Sbjct: 152 FFDVAEIAPLLCPQSRIRQGGLDEWVAEFGLQVHQR--HNASADALVTAELALMLFSKAR 209

Query: 180 QINFGFKTNEDRFFKEEKK 198
           +         +R     ++
Sbjct: 210 RQGIDSLCELERQLSSRRR 228


>gi|222823839|ref|YP_002575413.1| exonuclease [Campylobacter lari RM2100]
 gi|222539061|gb|ACM64162.1| conserved hypothetical protein, putative exonuclease [Campylobacter
           lari RM2100]
          Length = 459

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 70/186 (37%), Gaps = 27/186 (14%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K+  IV D ETTGL    D I+++  ++   Y      F  +  P  +    EA K+HGI
Sbjct: 148 KLNVIVIDTETTGLREWEDEILQLSIIDETGYLI----FDKYFKPKYKSTWIEAQKIHGI 203

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
              F+++K S  +   +    FN+ +   I +N  FD+ FI         D   P   ID
Sbjct: 204 KPAFVQNKASIDNYKIQLEKIFNDAD-VIIGYNLDFDLKFIKRV-----IDFEKPMFCID 257

Query: 126 TLSIARRKHPSSRN------------DLNSLCKRYG-----ITISHRSKHGALLDSHLLS 168
            + +    +    +             L      +        ++    HGAL D+    
Sbjct: 258 VMKLFTSYYHEESSILPNVDCGYSYKKLTFAAWHFKNPNALNPLNFHGAHGALEDARATL 317

Query: 169 DVYIKM 174
            V  K+
Sbjct: 318 YVLTKL 323


>gi|192289550|ref|YP_001990155.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
           TIE-1]
 gi|192283299|gb|ACE99679.1| Exonuclease RNase T and DNA polymerase III [Rhodopseudomonas
           palustris TIE-1]
          Length = 276

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 57/167 (34%), Gaps = 17/167 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL---DYSK--TNRTFQVFLCPNGRKNSPEALKLHG 64
           I+ DIETTGLD   D IIE+G V+     +        TF  F          E   + G
Sbjct: 23  IMLDIETTGLDHSTDEIIELGMVKFDYSAEGRILGVRGTFSAF-NEPSVPIPREITAITG 81

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD  +          + F D         IAHN+ FD  F     +R        +   
Sbjct: 82  ITDGMVAGHGFDVHAVAAFVD----DAVIVIAHNSGFDRKF----AERYWPVFEHRAWAC 133

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               +    H  +   L  L    G        H A+ D H L ++ 
Sbjct: 134 SVTEVDWGAHGFADAQLGYLLNGAGF---FHQAHRAVDDCHALLEIL 177


>gi|319900813|ref|YP_004160541.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
           P 36-108]
 gi|319415844|gb|ADV42955.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
           P 36-108]
          Length = 165

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 9/161 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + +   +  +G V + D   T+  +   + P     +    ++HG+T  
Sbjct: 4   FAAIDFETA--NEQRCSVCSVGVVVVKDGEMTDNYYS-LIRPEPEYYTYWTTRVHGLTLA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P F  ++ E       +    +AHN  FD   + A  +    D  D      TL 
Sbjct: 61  DTAQAPVFPDVWREISPRI--EGLPLVAHNKAFDESCLKAVFRTYGMDYPDYD-FYCTLQ 117

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            +RR         L+++  R G  +     H AL D+   +
Sbjct: 118 ASRRVIKGLPDYQLHTVASRCGYRLEQH--HHALADAEACA 156


>gi|284009066|emb|CBA76036.1| ribonuclease T [Arsenophonus nasoniae]
          Length = 147

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 12/141 (8%)

Query: 52  GRKNSPEALKLHGIT-DEFLKDKP----SFSSIFSEFWDFFNEQNA---EWIAHNAKFDV 103
           G      AL   GI  +  L++      +  +IF          +      +AHNA FD 
Sbjct: 2   GANIEATALAFTGIDPNNPLRNAVDEYTALHAIFKMVRKGIKNNDCNRAIIVAHNANFDH 61

Query: 104 GFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            FI A  QR  + ++P  P    DT +++       +  L   C   GI    +  HGAL
Sbjct: 62  SFIMAAAQRANLKRNPFHPFATFDTATLSGLVF--GQTILAKACYTAGIPFDGKQAHGAL 119

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+   + ++ +++    ++ 
Sbjct: 120 YDTDRTALLFCEIVNKWKKLG 140


>gi|260773955|ref|ZP_05882870.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260610916|gb|EEX36120.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 236

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 70/169 (41%), Gaps = 10/169 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD ET+G++++ D I+ +G V++          +     + +  + ++ +++ IT +
Sbjct: 52  FVAFDFETSGVNARQDHILSLGWVDMTLDEIDLAASEELFVCHPQFITAQSAQINHITPK 111

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L    +          F        + H +  +  F+   LQ+       P   IDTL 
Sbjct: 112 ILSAGLTLDEAMDRL--FIRLAGKVALVHGSCIERAFVERYLQQRYGLEQFPCVWIDTLQ 169

Query: 129 IARRKHPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           I ++     + D      L+ +  RYG+     S H A +D+   ++++
Sbjct: 170 IEKQMTYQGQTDIQRSFQLHDVRARYGLP--QYSAHSAAMDALATAELF 216


>gi|120598470|ref|YP_963044.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp.
           W3-18-1]
 gi|120558563|gb|ABM24490.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp.
           W3-18-1]
          Length = 223

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 15/170 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEAL 60
           +  ++   +  D+E TGLD   D+I+ IG V +           Q  +    R +  ++ 
Sbjct: 30  MPVSEAPLMAMDLEMTGLDPLQDQILSIGLVPIEHGVIPLEGALQKLV--QIRGSVGQSA 87

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI D  L    +     + F      +    +AH++  D  F+  ++  I    +  
Sbjct: 88  TIHGILDNHLVQAVTIEDAMAWFIA--KTRGRVLVAHHSPLDCRFLQQDILAIYHQAVFL 145

Query: 121 SRIIDTLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLD 163
              IDTL + +R+     +        L +  +RYG+ +   S H AL D
Sbjct: 146 -PSIDTLMLEKRRLLRGHHAIKEGSLRLGACRERYGLPVY--SAHSALTD 192


>gi|331677520|ref|ZP_08378195.1| ribonuclease T [Escherichia coli H591]
 gi|331073980|gb|EGI45300.1| ribonuclease T [Escherichia coli H591]
          Length = 146

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 12/136 (8%)

Query: 57  PEALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINA 108
           PEAL  +GI         + +  +   IF                 +AHNA FD  F+ A
Sbjct: 3   PEALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMA 62

Query: 109 ELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +R  + ++P  P    DT ++A       +  L+  C+  G+       H AL D+  
Sbjct: 63  AAERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTER 120

Query: 167 LSDVYIKMMVGGSQIN 182
            + ++ +++    ++ 
Sbjct: 121 TAVLFCEIVNRWKRLG 136


>gi|300779647|ref|ZP_07089503.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
 gi|300533757|gb|EFK54816.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
          Length = 238

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 10/166 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ETTG+   ND I+EIG V L        T++  + P+    +     +HGI ++
Sbjct: 20  YAVIDFETTGM-RDNDAIVEIGVVLLDKDLSVEDTWEALVNPHRLILN---TDVHGIEED 75

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    +F ++   F    + +    +AH+A ++  ++  E +R   D   P   IDT+ 
Sbjct: 76  DVDRGLTFPALAGYFKHLLHGR--TLVAHDATYEKRYLRYEFERWGMDDTVPDTWIDTMQ 133

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++ R     +  L        +  + ++   AL D+   +++   +
Sbjct: 134 LSSRYLGVKK--LKEALDVAKLP-ALKTL-DALSDASATANLLRHL 175


>gi|113460447|ref|YP_718509.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT]
 gi|170718007|ref|YP_001783526.1| exonuclease RNase T and DNA polymerase III [Haemophilus somnus
           2336]
 gi|112822490|gb|ABI24579.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT]
 gi|168826136|gb|ACA31507.1| Exonuclease RNase T and DNA polymerase III [Haemophilus somnus
           2336]
          Length = 236

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 74/172 (43%), Gaps = 10/172 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D ETTGL+S  D I+ +  V + + +   ++ +  F+    ++   + + ++ I  
Sbjct: 52  YLVIDFETTGLNSMMDNILSVATVPIDNLTLDISKAWHQFVA-EQQEIKEDTVIINHILP 110

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDT 126
           + L    +     ++ ++    Q    IAH +  +  FI   L  R N         +DT
Sbjct: 111 QMLNGAETLDDTMNKLFELM--QGRILIAHGSTIEKRFILHYLNVRYNLSQFPLF-WLDT 167

Query: 127 LSIARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           L I R     + N+  L+ +  +Y +       H AL+D+    ++++  + 
Sbjct: 168 LKIERSLCQDNENNYQLSHIRNKYNLP--EYIGHNALIDAISAGELFLAQLE 217


>gi|78184888|ref|YP_377323.1| exonuclease [Synechococcus sp. CC9902]
 gi|78169182|gb|ABB26279.1| DNA polymerase III, epsilon subunit [Synechococcus sp. CC9902]
          Length = 307

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 14/167 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGL+ +N   +E+GA+     S+     Q FL P        A  ++ I    
Sbjct: 79  LILDTETTGLEPENHCCVEVGAILFDVQSRAVLAQQSFLLPAETN---AAEPINRIPAAV 135

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +    +      F +  +  +   +AHNA FD  +         + P      + ++  
Sbjct: 136 TRLPQPWKQALLWFQNLLDAAD-VLVAHNAAFDRQWFGR-----GELPTVTQPWLCSMED 189

Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            R    +   SR  +  L   YG+ +   + H AL D   L++V+ +
Sbjct: 190 MRWPADRQLRSRPSVRDLALAYGVPVW--AAHRALTDCIYLAEVFAR 234


>gi|90424784|ref|YP_533154.1| exonuclease [Rhodopseudomonas palustris BisB18]
 gi|90106798|gb|ABD88835.1| Exonuclease [Rhodopseudomonas palustris BisB18]
          Length = 314

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 87/228 (38%), Gaps = 27/228 (11%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ET   + K      +G +  ++  +  R     + P   +      K+HG++
Sbjct: 1   MSILAIDFETA--NEKRSSPCALG-LAWIERGQIVRREYRLIKPKEMRFGVFEAKVHGLS 57

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +KD   F  + SEF    + Q+   +AHNA+FDV  + A L       +     + +
Sbjct: 58  PSEVKDAQEFPEVISEFLS--DIQSGLLLAHNAQFDVDVLCATLALYGI-AIPRFSFLCS 114

Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHL-------------LSDVYI 172
             +A R     ++  L++L ++ GI+  H   H A  D+               LS+V  
Sbjct: 115 QRVASRVWSDEKSLKLSALGEKLGISFRH---HQADEDAFACAHIILAAAAHLGLSEVLD 171

Query: 173 KMMVGGSQINF----GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                G ++ F    G    ED    ++ + VP+    KR        
Sbjct: 172 IAPRLGLRLGFVDEVGVVLCEDLPLCDKNEGVPSFRYAKRLSAFVNEA 219


>gi|256839708|ref|ZP_05545217.1| exonuclease [Parabacteroides sp. D13]
 gi|256738638|gb|EEU51963.1| exonuclease [Parabacteroides sp. D13]
          Length = 192

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 77/186 (41%), Gaps = 19/186 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKLHGI 65
           M+ + FD+ETTG+    + + +I    ++D   T  +F   +CP+ + +   EAL++  +
Sbjct: 1   MKLLFFDLETTGIKYWRNGVHQISGEIVIDG-VTKESFNFNVCPHPQCEIEEEALRICNV 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNE--------QNAEWIAHNAK-FDVGFINAELQRINKD 116
           + E ++  P    ++ +F +  ++             + +N   FD  F+ A   +   +
Sbjct: 60  SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQNGDN 119

Query: 117 PLDPSRII--------DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                  +         T  + R++H  +     ++ +  GI I     H A  D  L  
Sbjct: 120 YFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLTK 179

Query: 169 DVYIKM 174
            +Y ++
Sbjct: 180 KIYNRI 185


>gi|256381025|ref|YP_003104685.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
 gi|255925328|gb|ACU40839.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
          Length = 382

 Score = 94.5 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 13/146 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+ETTG   ++DR++E+  V+L    +    +   L P GR   P+   +H I 
Sbjct: 1   MGYAVVDVETTGF-RRSDRVVEVAVVQLDRDRRVTGEWCTLLNP-GRDLGPQ--HVHRIR 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +   P+F+                 +AHN  FD  F+ AE  R+  D       + T
Sbjct: 57  AADVWGAPTFALAAG--ALARRLAGRVLVAHNLAFDARFLAAEFGRVGVDADFDG--LCT 112

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITI 152
           + ++       R  L   C   G+ +
Sbjct: 113 MRLS-----GGRRSLRDCCADAGVPL 133


>gi|259156611|gb|ACV96554.1| exonuclease, RNase T and DNA polymerase III [Vibrio fluvialis Ind1]
          Length = 301

 Score = 94.1 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 20/177 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPE 58
           ++   ++ D ETTGL + ++ IIE+G V++L                ++  P G+     
Sbjct: 48  DEQPMVLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDP-GKPIPEL 106

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DP 117
             +L GITDE ++ +            + ++ +   +AHNA+FD  F       +     
Sbjct: 107 ITELTGITDEMVQGQ-HIDDAL--VASWLSD-DPLVVAHNAQFDRPFFEKRFAALGHLSW 162

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +  ID      +        L  L  R G        H A  D   ++ ++  +
Sbjct: 163 ACSASGID-----WKALGFESRKLEYLLLRLGWFYEG---HRAATDCLAMAWLFHLL 211


>gi|209696236|ref|YP_002264166.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238]
 gi|208010189|emb|CAQ80516.1| putative exonuclease [Aliivibrio salmonicida LFI1238]
          Length = 210

 Score = 94.1 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 70/176 (39%), Gaps = 7/176 (3%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALK 61
           R N    +  D ETT LD  +  ++ I A+++  +   T++T  + L P     + E++K
Sbjct: 24  RYNGEELVSIDCETTSLDPNHAELVSIAAIKIKQNRVLTSQTIHLKLRPP-HNLTSESVK 82

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H +    L    S      +   F   +    + ++  +D   ++    R    P    
Sbjct: 83  IHQLRHHDLSHGLSEKDAIIQLLQFIGNR--PIVGYHIHYDKKILDRSCLRHCGHPFPNR 140

Query: 122 -RIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +  +   +     P++  DL+       + +    +H AL D+   + +Y+++
Sbjct: 141 LIEVCHIYHHKLECLLPNAYYDLSIEAISTHLDLPQAERHDALQDAIAAALIYVRL 196


>gi|313205456|ref|YP_004044113.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter
           propionicigenes WB4]
 gi|312444772|gb|ADQ81128.1| Exonuclease RNase T and DNA polymerase III [Paludibacter
           propionicigenes WB4]
          Length = 189

 Score = 94.1 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            + FD ETTGL        +D     R++++  +               + P G     E
Sbjct: 2   YLFFDTETTGLPRDWKAPVSDLNNWPRLVQLAYLFFDSNGNKIAGGDFIIKPEGFTIPTE 61

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-D 116
           A ++HGIT E   ++     ++  +F    NE     +AHN  FD   + AE  R N  D
Sbjct: 62  ASRIHGITTERANQEGKPIQTVLRDFQSMINEAQ-YLVAHNMSFDEKIVGAEFLRNNMPD 120

Query: 117 PLDPSRIIDTLSIARRK------HPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSD 169
            + P R I T+            +      L+ L   Y +        H A  D H  + 
Sbjct: 121 SIAPKRKICTMQSTTNFCAINGPYGYKWPKLSEL--HYKLFKTDFEEAHNAAADIHATAR 178

Query: 170 VYIKMMVGGS 179
            + ++   G 
Sbjct: 179 CFWELRRLGK 188


>gi|71281793|ref|YP_271594.1| exonuclase [Colwellia psychrerythraea 34H]
 gi|71147533|gb|AAZ28006.1| exonuclase [Colwellia psychrerythraea 34H]
          Length = 228

 Score = 94.1 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 79/185 (42%), Gaps = 14/185 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            R +K+  +  D ETTGL++K D+++ +G + L     + +T    +     +     + 
Sbjct: 37  TRIDKVEILAVDFETTGLNAKQDKLLSVGFLTLKKQQMSLKTSYHQIIKTKAQLEESNVI 96

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDP 120
           +H ITD   +   + + +          +    + H A+ +  F+  A  +     P+ P
Sbjct: 97  IHHITDSQKEQGQALAIVVEALLKALAGK--VMLVHFARIERQFLAEACYELYGMAPIFP 154

Query: 121 SRIIDTLSIARRK-------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             +IDTL++A+R+       +  S   L +L   + +       H AL D+   +++++ 
Sbjct: 155 --MIDTLALAKRRLDKRDVAYDPSELRLTNLRNNFQLP--EHHAHNALNDAIATAELFMA 210

Query: 174 MMVGG 178
            M   
Sbjct: 211 QMSKA 215


>gi|86131767|ref|ZP_01050364.1| exonuclease family protein [Dokdonia donghaensis MED134]
 gi|85817589|gb|EAQ38763.1| exonuclease family protein [Dokdonia donghaensis MED134]
          Length = 400

 Score = 94.1 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 16/152 (10%)

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P F  +     +    +    +AHNA+FD   ++ E  R+          + T+ 
Sbjct: 1   MLRNAPKFHEVAKRIIEI--TEGCTIVAHNAQFDYRILSLEFDRLGYHF--DRTTLCTVE 56

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +++   P      L  L K  GI++S+R  H A  D+     ++  ++          K 
Sbjct: 57  LSQELLPGHDSYSLGKLTKALGISMSNR--HRADGDAIATVKLFELLLS---------KD 105

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
            E   FK+  ++ P   +  + K L   +  E
Sbjct: 106 PEQIVFKKATRSFPKKHMDTKLKELIKSVPSE 137


>gi|149188401|ref|ZP_01866694.1| DNA polymerase III, epsilon subunit [Vibrio shilonii AK1]
 gi|148837619|gb|EDL54563.1| DNA polymerase III, epsilon subunit [Vibrio shilonii AK1]
          Length = 197

 Score = 94.1 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 10/171 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGLD+  + I+ +G VE+ +++    + +     +  +   E   ++ I  E
Sbjct: 10  YLVLDFETTGLDANTNTILSLGWVEIANFTVNVASAKQLFIESPNEVKAETAVINHIMPE 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D  S  S  ++   F   +N   IAH +  +  F++  L +       P   +DTL+
Sbjct: 70  MLQDGISLDSAMTQL--FQAAKNKILIAHGSMIEAAFVDEYLTQKYGVSDLPVMWLDTLA 127

Query: 129 IARRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           I +    +          L+   KRYG+   +   H AL+D+   +++++ 
Sbjct: 128 IEKSMALAVNKDAEIDVRLSETRKRYGLPEYNG--HEALIDAIATAELFLA 176


>gi|78776758|ref|YP_393073.1| exonuclease [Sulfurimonas denitrificans DSM 1251]
 gi|78497298|gb|ABB43838.1| Exonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 234

 Score = 94.1 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 96/235 (40%), Gaps = 37/235 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEALKLHGITDE 68
           I  D+ETTGL+   D+I  IG + + + +     F  + L   G+K S +A  ++ IT+E
Sbjct: 3   IFLDVETTGLE-NGDKICSIGIICVSETAI----FSKYELVNEGKKISSKASSINHITNE 57

Query: 69  FLKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            +KDKP F    + E     N Q++  IAHN  FD+  +           L   +++DTL
Sbjct: 58  MIKDKPKFKDSKTWEILHENNNQSSTIIAHNVNFDLKMLLQS------GFLWQGKVVDTL 111

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRS------------KHGALLDS---HLLSDVY 171
            + +   P      L  L  RY + +                 H AL D+    LL +  
Sbjct: 112 RVTKHLIPECEEFSLQFL--RYELKLYKDEKKEAAKYSAEISAHNALSDALHVKLLYEYL 169

Query: 172 IKMMVGGSQINFGFKTN---EDRFFKEEKKTVPNISLLKR---DKPLFTRITKEE 220
           +++      +    K     +  F K + + +  IS+  R   +  L      +E
Sbjct: 170 LEIKEHDELVALSLKNVLIEKFNFGKYKGRYIEEISMCDRGYLEWMLLHVADLDE 224


>gi|323360067|ref|YP_004226463.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
 gi|323276438|dbj|BAJ76583.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
          Length = 224

 Score = 94.1 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 14/162 (8%)

Query: 11  VFDIETTGLDSKNDRIIE--IGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           VFD+ETTG+D  NDRI+   +G ++   +    R +   L   G      A  +HGIT E
Sbjct: 3   VFDLETTGVDVVNDRIVTAHVGVLDADGHVIDARDW---LADPGVDIPDGAAAIHGITSE 59

Query: 69  FLK--DKPSFSSIFS--EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRI 123
             +    P+   +    E            +A+NA FD   +  E  R    P++ PS +
Sbjct: 60  RARADGAPAPRVVAEVVEALSALFAAGIPVVAYNAPFDFSMLKHEAVRHGVAPIEAPSPV 119

Query: 124 IDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ID L + +   ++   +  L+ + + Y + +   S H A  D
Sbjct: 120 IDPLVVDKTYDRYRRGKRTLSVVAEHYAVPLE--SAHEACAD 159


>gi|281421814|ref|ZP_06252813.1| exonuclease [Prevotella copri DSM 18205]
 gi|281404056|gb|EFB34736.1| exonuclease [Prevotella copri DSM 18205]
          Length = 140

 Score = 94.1 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 7/141 (4%)

Query: 37  YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
             +   ++   + P     S    ++HG+T E   +   F  +++E       +    +A
Sbjct: 5   DGEIADSYYSLIKPEPEYYSYWNTRVHGLTQEDTMNADVFPKVWAEIAPKI--EGLPLVA 62

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH 154
           HNA FD G + A  Q    +  D      T   +RRK  +    + L ++    G  ++ 
Sbjct: 63  HNAPFDEGCLKAVFQMYQMEYPD-YEFHCTCRASRRKLGTLLPNHQLQTVAAYCGYDLTQ 121

Query: 155 RSKHGALLDSHLLSDVYIKMM 175
              H AL D+   + +  +++
Sbjct: 122 H--HNALADAEACAWIARELL 140


>gi|310640616|ref|YP_003945374.1| exonuclease rnase t and DNA polymerase iii [Paenibacillus polymyxa
           SC2]
 gi|309245566|gb|ADO55133.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus polymyxa
           SC2]
          Length = 223

 Score = 94.1 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 70/178 (39%), Gaps = 13/178 (7%)

Query: 7   MRKIVFDIE-TTGLDSK-NDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRK-NSPEAL 60
           M+ I++D+E T   +++ +  II+IGAV+++   D      TF  F+ P+ R   S + +
Sbjct: 1   MQYIIYDLEFTVSRNARYSSEIIDIGAVKVIHGEDGLFVADTFHSFVRPSNRPVISTDTV 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA-EWIAHNAKFDVGFINAELQRINKDPLD 119
           +  GIT   +   P F     +F  +    +     A     D   + +  +  + D   
Sbjct: 61  QFTGITQRDIDAAPLFPEAVKQFIAWLGTDSTYYLCAW-GPDDRQKLVSHCRTHHVDLGW 119

Query: 120 PSRIIDTLSIARRKHPS-SRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                D      R   S  +     L+   +   I    +  H AL D+   + V++ 
Sbjct: 120 IHNTNDIQKQISRLFSSNGKYRQLSLSQALELCNIEFDGQQ-HRALDDAVNTAQVFMH 176


>gi|260774372|ref|ZP_05883286.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260610499|gb|EEX35704.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 215

 Score = 94.1 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 72/179 (40%), Gaps = 11/179 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHG 64
           K   I  D ETT LD +   ++ I A +++D    T++ F + L          ++++H 
Sbjct: 27  KTELISLDCETTSLDPQRAELVSIAATKIIDNRILTSQAFHIRLAAPP-SLDSGSVRIHQ 85

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +  + L    S      +   F   +    + ++ ++D   ++   ++    PL    I 
Sbjct: 86  LRHQDLAYGLSEPQALQQLLAFIGNR--PLVGYHIRYDKTILDIACRKQLGFPLPNPLIE 143

Query: 125 DTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            +    ++      N      L ++C    + +  +  H AL D+   + V++++  GG
Sbjct: 144 VSQLYHQQLEKQLPNAYFDLSLAAICHHLDLPMQDK--HDALQDAITAALVFVRLSKGG 200


>gi|262341080|ref|YP_003283935.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272417|gb|ACY40325.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 1434

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 74/208 (35%), Gaps = 27/208 (12%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++ D ETTGL    +          RI++                   + P+       
Sbjct: 2   YLIVDTETTGLPISYNFSITHTDNWPRIVQFSWQNHDILGDLIEFKNFIIKPDHYDIPFN 61

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           A K+HGIT+E   K     S +  EF     +     I HN +FD   I  E  R   + 
Sbjct: 62  AFKIHGITNEKAEKYGVDLSFVLCEFRKSLEKSQC-LIGHNLEFDKKVIECEFLRKKIEI 120

Query: 118 -LDPSRIIDT--LSIARRKHPSSRND-----LNSLCKRY---GITISHRSKHGALLDSHL 166
                +I+DT  +S++  K P +R       L+ L ++     I       H A  D   
Sbjct: 121 SFKKKKILDTKEISVSYCKLPGNRKKFKWPTLSELYQKLFEEKIPN----LHDAANDVKA 176

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFK 194
            +  +++++  G   +      +D   K
Sbjct: 177 TARCFLELLRIGIISHQDIGVEKDTILK 204


>gi|221316927|ref|YP_002533071.1| bacteriophage 186 Orf81-like protein [Bacillus cereus Q1]
 gi|221243259|gb|ACM15967.1| bacteriophage 186 Orf81-like protein [Bacillus cereus Q1]
          Length = 288

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 23/168 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I KNK   I+ D ETTGL      I+EI A++L   +  N     F+ P       ++ K
Sbjct: 120 IEKNKDNYIILDTETTGL-GLGHEIVEIAAIDLYGNTLLN----TFVTPTI-PIPADSTK 173

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGITD+ +KD PS+   + +       Q    + +NA FD+  I+   +  N  P    
Sbjct: 174 IHGITDDMVKDAPSWEETYMKLLTI--SQGKTILIYNAAFDIPKISYTCEVHNIAP-KKL 230

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS----KHGALLDSH 165
           +    + +      S           Y + +S  +     H A+ D  
Sbjct: 231 KSECIMELYAEYIDSQ----------YWVPLSEAAGTITSHRAINDCK 268


>gi|229113222|ref|ZP_04242717.1| exonuclease [Bacillus cereus Rock1-15]
 gi|228670248|gb|EEL25596.1| exonuclease [Bacillus cereus Rock1-15]
          Length = 288

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 17/171 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           NK + ++ D ETTGL  + D+IIEI  ++L      N      + P       EA  +HG
Sbjct: 127 NKDQFVILDTETTGLTLR-DQIIEISVIDLAGKILLN----SLVKPTI-IIPAEATSIHG 180

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E +    S+++I+ E  +         + +NA+FD+G I       N       +  
Sbjct: 181 ITNEMIHGAQSWTTIYQELLEV--TVGKTILIYNAEFDLGMIENTCI-ANNVEFKDFKST 237

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + +      S +   L+   K   +TI    KH A  D   + ++  ++
Sbjct: 238 CVMKMYADYVDSKKWISLSDATK---LTI----KHRAAADCFAVLELLQQL 281


>gi|15451563|gb|AAK98687.1|AC021893_21 Putative exonuclease [Oryza sativa Japonica Group]
 gi|31432001|gb|AAP53700.1| exonuclease family protein, putative, expressed [Oryza sativa
           Japonica Group]
          Length = 493

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 20/223 (8%)

Query: 9   KIVFDIET-----TGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGR-KNSPEALK 61
              FD+ET      G   +   ++E GA+ +         ++   + P      S  +++
Sbjct: 30  IAFFDVETSVPQRAG---QGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVR 86

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP 120
            +GIT + +   P+F  +    +   + +   W  HN  +FD+  I      I + P +P
Sbjct: 87  CNGITRDAVAAAPAFRDVADAVYSVLHGR--VWAGHNIVRFDLARIREAFAEIGRPPPEP 144

Query: 121 SRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMV 176
             +IDTL +  +K    +    + SL   +G+    R  H +L D  +  +V  Y   ++
Sbjct: 145 KGMIDTLPLLTQKFGRRAGDMKMASLANYFGL---GRQSHRSLDDVRMNLEVLKYCATVL 201

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                  G  T E+   +   ++  N +          R + +
Sbjct: 202 FLEASLPGVLTVENLVERAITRSQANGAASPEVPKPVARSSPD 244


>gi|125973027|ref|YP_001036937.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           thermocellum ATCC 27405]
 gi|256004824|ref|ZP_05429799.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           thermocellum DSM 2360]
 gi|281417237|ref|ZP_06248257.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           thermocellum JW20]
 gi|125713252|gb|ABN51744.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           thermocellum ATCC 27405]
 gi|255991274|gb|EEU01381.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           thermocellum DSM 2360]
 gi|281408639|gb|EFB38897.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           thermocellum JW20]
 gi|316940738|gb|ADU74772.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           thermocellum DSM 1313]
          Length = 215

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 14/174 (8%)

Query: 7   MRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  IV+D+E   L+SK       + IIEIGA++L +  +    F  F+ P   K     +
Sbjct: 1   MNYIVYDLE---LNSKPFKSSIPNEIIEIGAIKLNENLQEIGMFSSFIKPKYFKKLFSVV 57

Query: 61  KL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPL 118
           K    IT E +    SF ++  +F  +  +        H+   ++  +N +  RI  D L
Sbjct: 58  KQKTKITQEQINSADSFRNVIKQFIRWIGDDYLLISWGHDDVLNL-ILNCKFNRIKIDWL 116

Query: 119 DPSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +  I     A    P   R  L +     G+ I   + H AL D+   + ++
Sbjct: 117 KRNIDIQKQFSAIYHLPSGQRYSLENALALIGVEID-ENLHRALTDAQYTAKIF 169


>gi|315637226|ref|ZP_07892446.1| exonuclease [Arcobacter butzleri JV22]
 gi|315478498|gb|EFU69211.1| exonuclease [Arcobacter butzleri JV22]
          Length = 247

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 32/186 (17%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD ETTG  ++ DR+I+ GA+ + +  K    F    C        EA+++H IT +
Sbjct: 4   YVLFDTETTG-AAQEDRVIQFGAMIVDNKGKV-EAFDEL-CSAPIPIKLEAMEVHNITPD 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            L++KP   ++ + F+    E N++    IAHN  FD+  I  E         +  ++ID
Sbjct: 61  LLENKP--KAVETNFYKRLEELNSDENYLIAHNINFDLDMIKKE------GFENSYKLID 112

Query: 126 TLSIARRKHPSSR-NDLNSL-------------CKRYGITISHRSKHGALLDSHLLSDVY 171
           TL  A+        + L  L               +YGITI     H A+ D  ++  ++
Sbjct: 113 TLRCAKHLFSDLPYHRLQYLRYALDLYKFEENEASKYGITI---KAHDAIGDVLVM-KLF 168

Query: 172 IKMMVG 177
           +  +VG
Sbjct: 169 LSKLVG 174


>gi|110289067|gb|ABG66074.1| exonuclease family protein, putative, expressed [Oryza sativa
           Japonica Group]
          Length = 267

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 20/223 (8%)

Query: 9   KIVFDIET-----TGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGR-KNSPEALK 61
              FD+ET      G   +   ++E GA+ +         ++   + P      S  +++
Sbjct: 30  IAFFDVETSVPQRAG---QGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVR 86

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP 120
            +GIT + +   P+F  +    +   + +   W  HN  +FD+  I      I + P +P
Sbjct: 87  CNGITRDAVAAAPAFRDVADAVYSVLHGR--VWAGHNIVRFDLARIREAFAEIGRPPPEP 144

Query: 121 SRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMV 176
             +IDTL +  +K    +    + SL   +G+    R  H +L D  +  +V  Y   ++
Sbjct: 145 KGMIDTLPLLTQKFGRRAGDMKMASLANYFGL---GRQSHRSLDDVRMNLEVLKYCATVL 201

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                  G  T E+   +   ++  N +          R + +
Sbjct: 202 FLEASLPGVLTVENLVERAITRSQANGAASPEVPKPVARSSPD 244


>gi|262382001|ref|ZP_06075139.1| exonuclease [Bacteroides sp. 2_1_33B]
 gi|262297178|gb|EEY85108.1| exonuclease [Bacteroides sp. 2_1_33B]
          Length = 192

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 77/186 (41%), Gaps = 19/186 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKLHGI 65
           M+ + FD+ETTG+    + + +I    ++D   T  +F   +CP+ + +   EAL++  +
Sbjct: 1   MKLLFFDLETTGIKYWRNGVHQISGEIVIDG-VTKESFNFNVCPHPQCEIEEEALRICNV 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNE--------QNAEWIAHNAK-FDVGFINAELQRINKD 116
           + E ++  P    ++ +F +  ++             + +N   FD  F+ A   +    
Sbjct: 60  SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQNGDH 119

Query: 117 PLDPSRII--------DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                  +         T  + R++H  +     ++ +  GI I     H A  D  L  
Sbjct: 120 YFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLTK 179

Query: 169 DVYIKM 174
           ++Y ++
Sbjct: 180 EIYNRI 185


>gi|259156119|gb|ACV96067.1| exonuclease, RNase T and DNA polymerase III [Providencia
           alcalifaciens Ban1]
          Length = 301

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 20/177 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPE 58
           ++   ++ D ETTGL + ++ IIE+G V++                 ++  P G+     
Sbjct: 48  DEQPMVLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDP-GKPIPEL 106

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DP 117
             +L GITD+ ++ +            + ++ +   +AHNA+FD  F       +     
Sbjct: 107 ITELTGITDDMVRGQ-HIDDAL--VASWLSD-DPLVVAHNAQFDRPFFEKRFAALGHLSW 162

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +  ID      +        L  L  R G        H A  D   ++ ++  +
Sbjct: 163 ACSASGID-----WKALGFESRKLEYLLLRLGWFYEG---HRAATDCLAMAWLFHLL 211


>gi|114776398|ref|ZP_01451443.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans
           PV-1]
 gi|114553228|gb|EAU55626.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans
           PV-1]
          Length = 310

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 18/172 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-----KLHG 64
           +V D ETTGLD+  D IIE+G V     + + R ++V    +G ++    L     +L G
Sbjct: 40  LVIDTETTGLDTTADTIIELGFVAFSYDAGSGRIYEVLHNYDGFEDPGAPLSDVVKQLTG 99

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+D  +  +        E   +  + +   IAHNA FD   +   L              
Sbjct: 100 ISDAMVAGQ-RLDDA--EIETWLKKADL-LIAHNAAFDRPMLERRL-----PLAAEKNWA 150

Query: 125 DT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            T   I       +   L+ +  R G        H A++D+     +  + M
Sbjct: 151 CTFCDINWDAEGIASRKLDYIACRLGYFFDG---HRAVVDAQATLHLLTRAM 199


>gi|307300662|ref|ZP_07580437.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti
           BL225C]
 gi|306904196|gb|EFN34781.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti
           BL225C]
          Length = 325

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 69/186 (37%), Gaps = 21/186 (11%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALK 61
            +R ++ D ETTGLD++   IIEIG V     +  +      ++  L        P+  +
Sbjct: 67  PLRGVILDTETTGLDARKCEIIEIGLVSFTYNEEGEIGDVVAIYGGLQQPTIAIPPDITR 126

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +  + S     +         +   IAHNA FD  F  A       D     
Sbjct: 127 LTGITDAMVAGQ-SID--IAAVQAIVGPADL-IIAHNAGFDRPFCEAFS-----DVFVRK 177

Query: 122 RIIDTLS---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               ++S    + R    ++  L  L    G +      H A+ D   L +V  +   G 
Sbjct: 178 AWACSVSEIDWSGRGFEGTK--LGYLI---GQSGYFHDGHRAVDDCFALLEVLEQSSGGA 232

Query: 179 SQINFG 184
           +   F 
Sbjct: 233 ALPPFA 238


>gi|302550179|ref|ZP_07302521.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
 gi|302467797|gb|EFL30890.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
          Length = 242

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 13/163 (7%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             +     FD ETTG+D + DRI+    V         R  +  + P G     EA  +H
Sbjct: 5   WYEGPLAAFDTETTGVDVETDRIVSAAVVVQDAPGVRPRVSRWLVNP-GVPVPAEATAVH 63

Query: 64  GITDEFL-KDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLD 119
           G+T+E L ++    + +  E  +   EQ       +  NA FD+  ++ EL+R     L 
Sbjct: 64  GLTEEHLQRNGRWPAPVVYEIAETLAEQAHAGRPVVVMNAPFDLTLLDRELRRHRASALG 123

Query: 120 PS------RIID--TLSIARRKHPSSRNDLNSLCKRYGITISH 154
                    ++D   L     ++   R  L  LC  YG+ +  
Sbjct: 124 RWFESAPLWVLDPRVLDKHLDRYRKGRRTLTDLCAHYGVALEG 166


>gi|237748400|ref|ZP_04578880.1| exonuclease family protein [Oxalobacter formigenes OXCC13]
 gi|229379762|gb|EEO29853.1| exonuclease family protein [Oxalobacter formigenes OXCC13]
          Length = 327

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 20/175 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPE 58
           +++  +  D ETTGL S  D IIE+G V+ L            R    +  P G+  +P 
Sbjct: 74  DEIAIVFLDTETTGLSSDMDVIIELGLVKALFSPTAHRLVSIERIVSAYEDP-GKPITPF 132

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             +L GITD+ ++ K    ++ + F D         +AHNA FD  F     +       
Sbjct: 133 ITELTGITDDMVRGKRIDETMVAGFLD----DAVLIVAHNAAFDRPFFEKRFRG-----F 183

Query: 119 DPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +  +   +L          +N  L  L  + G        H A +D   L+ +  
Sbjct: 184 EEKKWACSLVGIDWNGLGFKNLKLEELVLKSG---YFYEAHRACIDCLALAWLLH 235


>gi|126641114|ref|YP_001084098.1| ribonuclease T [Acinetobacter baumannii ATCC 17978]
          Length = 172

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 16/146 (10%)

Query: 44  FQVFLCP-NGRKNSPEALKLHGITD------EFLKD-KPSFSSIFSEFWDFFNEQNA--- 92
           F   + P  G      +L   GI           +D + +   IF    +   +Q+    
Sbjct: 14  FHAHINPFEGANLDRRSLDFIGIDPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHA 73

Query: 93  EWIAHNAKFDVGFINAELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
             + HNA FD+GF+ A + R     ++P     ++DT++++       +  L   C + G
Sbjct: 74  VLVGHNAHFDLGFLQAAIARSGTKNQNPFHSFSVMDTVTLSAVMF--GQTVLAKACIQAG 131

Query: 150 ITISHRSKHGALLDSHLLSDVYIKMM 175
           I    +  H AL D+   ++++  ++
Sbjct: 132 IEFDGKEAHSALYDTQKTAELFCYIL 157


>gi|152990271|ref|YP_001355993.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2]
 gi|151422132|dbj|BAF69636.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2]
          Length = 197

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 67/171 (39%), Gaps = 7/171 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGLD KND I+ I  + +       ++   + L P  +  S +++K+H +  
Sbjct: 24  IVFIDCETTGLDPKNDEILSIACLPVKKDKILLSKALYLELKPQ-KDISAQSIKIHHLRA 82

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT- 126
             L+              F   +      +  +FDV  I+   ++     L   +I  + 
Sbjct: 83  CDLQGAMEPKEAIERVLYFIKNR--PVAGYYVEFDVKMISKYTKKFFGFTLPNKQIEVSG 140

Query: 127 --LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 ++  P    DL        + +     H AL D+ + + +Y+K++
Sbjct: 141 LYYDYKQKAIPQGFIDLKFDTILKDLNLPKLKAHNALNDTIMSAMIYLKLI 191


>gi|313677443|ref|YP_004055439.1| DNA polymerase iii, alpha subunit [Marivirga tractuosa DSM 4126]
 gi|312944141|gb|ADR23331.1| DNA polymerase III, alpha subunit [Marivirga tractuosa DSM 4126]
          Length = 1433

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 83/247 (33%), Gaps = 27/247 (10%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            +++D ETTGL    +          R ++I         +        + P G      
Sbjct: 2   YLIYDTETTGLPKNYNAPLSDADNWPRCVQIAWQLHGANGELLDAQNHIIKPEGFDIPYN 61

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INK 115
           A K+HGI+ E   K+      +   F     + +   + HN  FD+  + AE+ R  +++
Sbjct: 62  AEKVHGISTERAQKEGKPLIEVLEAFKTILEKTD-VVVGHNISFDISIMGAEMLRKELSE 120

Query: 116 DPLDPSRIIDTLSIARR--KHPSSRN------DLNSLCKR-YGITISHRSKHGALLDSHL 166
             L    IIDT        K P  R        L  L K+ +G   +    H A  D   
Sbjct: 121 TVLTEKPIIDTKEAGTDFCKIPGGRGGKYKWPTLTELHKKLFGQDFAD--AHDAAYDVDA 178

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK 226
            +  +  ++   +    G    E   ++  K    N +   +++      +       + 
Sbjct: 179 TAKCFFGLITEKAVKPLGETPIEAINYEPPKLDAANFATSSKNEE--KAASDALKQAKNA 236

Query: 227 TIQTLGK 233
            I  L  
Sbjct: 237 DISELSD 243


>gi|300024532|ref|YP_003757143.1| exonuclease RNase T and DNA polymerase III [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526353|gb|ADJ24822.1| Exonuclease RNase T and DNA polymerase III [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 225

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 20/196 (10%)

Query: 7   MRKIVFDIETTGL------DSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNS 56
            R +  D ETTGL         +DR+I IG  +     L        F  F+    + ++
Sbjct: 22  QRILFVDTETTGLRRPSAASEDHDRVISIGFFDTDASALQAGFCRGKFGYFIFNPQQASA 81

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
             A ++HG +D  L  + +F+S     +  F   +   ++HN  FD  F+ +E     + 
Sbjct: 82  AGARRVHGYSDRILAQQDTFASCADMLFPAFGSADL-IVSHNTDFDRPFVESEFAGAGRS 140

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            L       T+   R +       L++   R GI      +HGAL D+      ++ MM+
Sbjct: 141 -LRGKSWHCTMQAERARG-GGSASLDASIDRLGIQ-RQSGRHGALEDA------WLAMML 191

Query: 177 GGSQINFGFKTNEDRF 192
             +Q        + R 
Sbjct: 192 YLAQNGIRLPDQQYRP 207


>gi|90420422|ref|ZP_01228329.1| polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90335150|gb|EAS48903.1| polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 260

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 75/224 (33%), Gaps = 27/224 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           V D+ET G   ++D +IEIG++++ L         Q    P G   +P A ++H I+D  
Sbjct: 18  VIDVETAGHRLEDDAVIEIGSIDVDLATGVIGNPLQTLCDPAGVAINPHARRVHQISDAM 77

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P F+     F          + A  A FD   +               R + T  +
Sbjct: 78  LDGAPPFAEAVRPFASA-----GLYAAQRASFDRSRLR-----------LTGRWLCTYKL 121

Query: 130 ARRKHPSSR-NDLNSLCKRYGITIS-------HRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           A R  P  R + L SL K   + +S           H AL D+   + +   +       
Sbjct: 122 ALRAFPQVRAHGLQSLVKYVPLDLSEVRPMLEGLHPHRALYDAVCTAVLLRTIAATLMPR 181

Query: 182 NFGFKTNEDRF--FKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
                   +R      E   +  +   +        +    L+ 
Sbjct: 182 CHDVDDFLERAERVSHEPALLARLRFGRHKGVALAEVPDAYLEW 225


>gi|157737501|ref|YP_001490184.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|157699355|gb|ABV67515.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
          Length = 247

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 32/186 (17%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++FD ETTG  ++ DR+I+ GA+ + +  K    F    C        EA+++H IT +
Sbjct: 4   YVLFDTETTG-AAQEDRVIQFGAMIVDNKGKV-EAFDEL-CSAPIPIKLEAMEVHNITPD 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            L++KP   ++ + F+    E N++    IAHN  FD+  I  E         +  ++ID
Sbjct: 61  LLENKP--KAVETNFYKRLEELNSDENYLIAHNINFDLDMIKKE------GFENSYKLID 112

Query: 126 TLSIARRKHPSSR-NDLNSL-------------CKRYGITISHRSKHGALLDSHLLSDVY 171
           TL  A+        + L  L               +YGITI     H A+ D  ++  ++
Sbjct: 113 TLRCAKHLFSDLPYHRLQYLRYALDLYKFEENEASKYGITI---KAHDAIGDVLVM-KLF 168

Query: 172 IKMMVG 177
           +  +VG
Sbjct: 169 LSKLVG 174


>gi|150377384|ref|YP_001313979.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419]
 gi|150031931|gb|ABR64046.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium medicae
           WSM419]
          Length = 308

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 63/170 (37%), Gaps = 15/170 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALK 61
            +R ++ D ETTGL+ + D IIEIGAV     D         ++  L        PE  +
Sbjct: 52  PLRGLILDTETTGLNHRKDEIIEIGAVAFTFDDAGNIGDVIDLYGGLQQPSISVPPEITR 111

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITDE +  +                 +   IAHNA FD  F  A      +     S
Sbjct: 112 LTGITDEMVLGQ-KID--LHRLRAVVEPADL-IIAHNAGFDRPFCEAFSPIFARKAWACS 167

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +  +    R    ++  L  L  + G        H A+ D   L +V 
Sbjct: 168 --VSEIDWPARGFEGTK--LGYLIGQAG---YFHEGHRAVDDCFALLEVL 210


>gi|225022753|ref|ZP_03711945.1| hypothetical protein CORMATOL_02798 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944474|gb|EEG25683.1| hypothetical protein CORMATOL_02798 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 232

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 70/172 (40%), Gaps = 15/172 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N ++ + FD+ETT  +    RI+    V +          Q  L   G      A K+HG
Sbjct: 11  NPLKVLSFDLETTSANPFEARIVTSALVHIDSGG---AHPQELLADPGVPIPEAATKVHG 67

Query: 65  ITDEFLKDKP-SFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDP 120
           IT E+ ++     + + +E      +  A+    I +NA +D+  +++    +    L  
Sbjct: 68  ITTEYAREHGRPHADVLAETIATIKKAWADGYTLIVYNASYDLTVLHS----LEPGFLIT 123

Query: 121 SRIIDTLSIARRKHP--SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             + D   + +   P    +  L +LC+ Y + + +   H A  D+   + +
Sbjct: 124 GPVYDPYVMDKLLDPYRRGKRTLTALCEEYQVRLEN--AHEATSDALAAARI 173


>gi|299132474|ref|ZP_07025669.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2]
 gi|298592611|gb|EFI52811.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2]
          Length = 297

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 76/243 (31%), Gaps = 39/243 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL---DYSKTN--RTFQVFLCPNGRKNSPEALKLHGIT 66
            D+ETTGLD   D IIE+  V      D +       F     P+ +  S E   L GIT
Sbjct: 46  VDVETTGLDPDRDEIIELAMVPFRYALDGTVVEVLEPFDRLREPS-KPISSEITVLTGIT 104

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D  +  K    SI       F    A  IAHNA FD  F+                   +
Sbjct: 105 DAMVAGK----SIDPSEVTMFAAPAAVVIAHNAAFDRRFLERFS-----PVFSTKPWACS 155

Query: 127 LS---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH----------------LL 167
           +S    A      ++  L+ L    G       +H A  D                   L
Sbjct: 156 MSEIDWAAEGFEGAK--LSYLAMALGFFYD---RHRAANDCLAAIELLARELPRARAPAL 210

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
           + +  +  +   +I       E +   + +    N     + +  +  ++  E +     
Sbjct: 211 AKLLERARLPTWRIWAENSPFEFKDLLKARGYRWNGEENGKPRSWYVDVSDAEKEAEISY 270

Query: 228 IQT 230
           +  
Sbjct: 271 LAR 273


>gi|172051553|emb|CAQ34948.1| hypothetical protein [Photobacterium damselae subsp. piscicida]
          Length = 302

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 67/177 (37%), Gaps = 20/177 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPE 58
           ++   ++ D ETTGL + ++ IIE+G V++                 ++  P G+     
Sbjct: 48  DEQPLVLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDP-GKPIPEL 106

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DP 117
             +L GITD+ ++ +     +      + ++ +   +AHNA+FD  F       +     
Sbjct: 107 ITELTGITDDMVQGQ-HIDDLL--VASWLSD-DPLVVAHNAQFDRPFFEKRFAALGHLSW 162

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +  ID      +        L  L  R G        H A  D   ++ ++  +
Sbjct: 163 ACSASGID-----WKALGFESRKLEYLLLRLGWFYEG---HRAATDCLAMAWLFHLL 211


>gi|89098850|ref|ZP_01171731.1| DNA polymerase III subunit epsilon [Bacillus sp. NRRL B-14911]
 gi|89086526|gb|EAR65646.1| DNA polymerase III subunit epsilon [Bacillus sp. NRRL B-14911]
          Length = 214

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 78/210 (37%), Gaps = 32/210 (15%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ------VFLCP---NGRKNSPEALKL 62
            D+ETTGL    D IIE+  +       T    Q          P      +N   A ++
Sbjct: 10  VDVETTGLAPGGDEIIELAFILFSYDGATGEILQVEEKESFLREPLSSRALRNYSSAYRI 69

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI  E ++ +  F         F N+ ++ + AHNA FD  F+      +N       +
Sbjct: 70  HGIPFEMVRGQV-FHD--ESVQSFLNKADSVF-AHNASFDRSFMYQMYPEVN-----DLK 120

Query: 123 IIDTLS-IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
              T+  +  +K+  + + L +L   + I  +    H A+ D  +    Y+  ++     
Sbjct: 121 WYCTMKGVQWKKYGFANSKLATLLSAHNI--TDHQTHRAMDD--IT---YLMELMKQQNP 173

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
           + G       F KE  +  P        KP
Sbjct: 174 DGGL------FLKEVLEKGPMRKYQPAKKP 197


>gi|163937886|ref|YP_001642772.1| exonuclease RNase T and DNA polymerase III [Bacillus
           weihenstephanensis KBAB4]
 gi|163865741|gb|ABY46797.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           weihenstephanensis KBAB4]
          Length = 271

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 63/164 (38%), Gaps = 13/164 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67
             VFD+ETTGLD KN++++EI A+      +  R   + +    G+K     +    + D
Sbjct: 14  FTVFDLETTGLDYKNEQVVEIAAIRTDLEQELGR-MHILVKLNEGKKLPDFLVDNTDLRD 72

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L +             F    N+  +AH A FD  ++   L       + P   + T 
Sbjct: 73  YMLVNGMVEHQALINLMAFMG--NSIVVAHYAPFDFAYLFKAL-------IAPELFLCTR 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           SI R   P     L    +R G+ +     H A+ D      V 
Sbjct: 124 SIERLLTPDKSASLAPTAERRGVKLEG--AHRAMNDIEATIGVL 165


>gi|255547339|ref|XP_002514727.1| exonuclease, putative [Ricinus communis]
 gi|223546331|gb|EEF47833.1| exonuclease, putative [Ricinus communis]
          Length = 501

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 22/175 (12%)

Query: 9   KIVFDIETT-------GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCP-NGRKNSPEA 59
              FD+ETT       G       I+E GA+ +         ++   + P N    SP +
Sbjct: 12  IAFFDLETTVPNRPGQGF-----AILEFGAILVCSRKLEELHSYSTLVRPANLSLISPTS 66

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
           ++ +GIT + +   P+F+ I    ++  N +   W  HN  +FD   I      I + P 
Sbjct: 67  VRCNGITHDAVVLAPTFAEIADIVYEILNGR--IWAGHNIQRFDCVRIREAFAEIGRQPP 124

Query: 119 DPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +   IIDTL++   K    +    + SL   +G+    +  H +L D  +  +V 
Sbjct: 125 ENKGIIDTLALLTHKFGRRAGDMKMASLATYFGL---GKQTHRSLDDVRMNLEVL 176


>gi|77543206|gb|ABA87018.1| hypothetical protein [Vibrio cholerae]
 gi|259156499|gb|ACV96443.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Mex1]
          Length = 301

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 20/177 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPE 58
           ++   ++ D ETTGL + ++ IIE+G V++                 ++  P G+     
Sbjct: 48  DEQPMVLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDP-GKPIPEL 106

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DP 117
             +L GITD+ ++ +     I       +   +   +AHNA+FD  F       +     
Sbjct: 107 ITELTGITDDMVRGQ----RIDDSLVASWLSDDPLVVAHNAQFDRPFFEKRFAALGHLSW 162

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +  ID      +        L  L  R G        H A  D   ++ ++  +
Sbjct: 163 ACSASGID-----WKALGFESRKLEYLLLRLGWFYEG---HRAATDCLAMAWLFHLL 211


>gi|328881184|emb|CCA54423.1| putative DNA polymerase III [Streptomyces venezuelae ATCC 10712]
          Length = 242

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 15/164 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   +     FD ETTG+D + DRI+    V         R  +  + P G      A  
Sbjct: 3   MHWYEGPLAAFDTETTGVDVEEDRIVSAALVVQDTVGARPRVTRWLVNP-GIPVPEGATA 61

Query: 62  LHGITDEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           +HG+TD+ L+       P    +     +         +  NA FD+  ++ EL+R    
Sbjct: 62  VHGLTDDHLQRYGRWPAPVMEELARALAEQIAA-GRPLVVMNAPFDLTILDRELRRHRAS 120

Query: 117 PL------DPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITI 152
            L       P  ++D   L     ++   R  L  LC  Y + +
Sbjct: 121 TLGHYLASTPLCVLDPRVLDKHLDRYRKGRRTLTDLCAHYEVEL 164


>gi|254850923|ref|ZP_05240273.1| exonuclease family [Vibrio cholerae MO10]
 gi|21885332|gb|AAL59738.1| unknown [Vibrio cholerae]
 gi|254846628|gb|EET25042.1| exonuclease family [Vibrio cholerae MO10]
 gi|259156302|gb|ACV96248.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ind4]
          Length = 302

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 20/177 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPE 58
           ++   ++ D ETTGL ++++ IIE+G V++L                ++  P G+     
Sbjct: 48  DEQPMVLLDTETTGLSAEDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDP-GKPIPEL 106

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DP 117
             +L GITD+ ++ +     I       +   +   +AHNA+FD  F       +     
Sbjct: 107 ITELTGITDDMVQGQ----HIDDSLVASWLSDDPLVVAHNAQFDRPFFEKRFAALGHLSW 162

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +  ID      +        L  L  R G        H A  D   ++ ++  +
Sbjct: 163 ACSASGID-----WKALGFESRKLEYLLLRLGWFYEG---HRAATDCLAMAWLFHLL 211


>gi|327402957|ref|YP_004343795.1| DNA polymerase III subunit alpha [Fluviicola taffensis DSM 16823]
 gi|327318465|gb|AEA42957.1| DNA polymerase III, alpha subunit [Fluviicola taffensis DSM 16823]
          Length = 1463

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 74/231 (32%), Gaps = 23/231 (9%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL         D     R I+I      +           + P+G     +
Sbjct: 2   FLIFDTETTGLPRDWNAPLTDLDNWPRAIQIAWQLHDELGNLIEAKDYLIRPDGFDIPYD 61

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----- 112
           A ++HGI+ E  L+       + +EF +   +     +  N  FD+  + AE  R     
Sbjct: 62  AERIHGISTELALEQGQDLEDVIAEFNEVLRKSQ-FVVGQNIGFDLNIMGAEFLRTQVAT 120

Query: 113 --INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGALLDSHLLS 168
              +   LD    +             +  L +L + +     +     H A  D    +
Sbjct: 121 NMHDLPVLDTCTEVTANLCKIPGGRGGKFKLPTLTELHSFLFNVPFGEAHNATADVEATT 180

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPN-ISLLKRDKPLFTRITK 218
             + +++          K  E  FF   K   P+ I  +          + 
Sbjct: 181 RCFFELVRREVFTAEELKV-ELEFFNRFKIANPDFIQPIGLTHLNLKEASA 230


>gi|194336729|ref|YP_002018523.1| Exonuclease RNase T and DNA polymerase III [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309206|gb|ACF43906.1| Exonuclease RNase T and DNA polymerase III [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 190

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            + FD ETTGL         D     R++++  +          +    + P G      
Sbjct: 2   YLFFDTETTGLPRNWRAPVTDVDNWPRLVQLAYLSFDAEGNQLFSGDAIIKPEGFVIPSS 61

Query: 59  ALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-D 116
           A+++HGI T   L +      +   F++   +     +AHN  FD   + +EL R    +
Sbjct: 62  AVQIHGISTQRALLEGKPLGQVLQSFYELVADAE-VLVAHNISFDEKIVGSELIRAGMPN 120

Query: 117 PLDPSRIIDTLSIARRK------HPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSD 169
            L   R I T+            + +    L+ L  + +G   +    H A  D    + 
Sbjct: 121 SLPSKRKICTMESTTDFCAIKGPYGNKWPKLSELYFQLFGTVFN--EAHNAASDIQATAK 178

Query: 170 VYIKMMVGG 178
            + ++   G
Sbjct: 179 CFWELKRRG 187


>gi|297625330|ref|YP_003687093.1| DNA polymerase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921095|emb|CBL55640.1| DNA polymerase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 522

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 58/171 (33%), Gaps = 11/171 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
              +  D ET    S      +I  V +      +R F   L P    +  E   LHGI+
Sbjct: 346 QPFVAADFETANRSSGVSA-CQIALVRVESGRVVDR-FNTLLKPPSGFDDFEFTYLHGIS 403

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
               +  PS+  I      F    +A   AHNA FD        +  +   L P     +
Sbjct: 404 ARDTRTAPSWPDIIPAIRGFAG--DATVYAHNAPFDSRVWRQLDEFFHTRSL-PDHFFCS 460

Query: 127 LSIARRKHPSS-RNDLNSLCKRY--GITISHRSKHGALLDSHLLSDVYIKM 174
              ARR  P      L ++ +R      + H   H A  D+   + +   +
Sbjct: 461 YLTARRMMPGLDNYRLPTVLERCAPHFVLDH---HKADSDAEACALIVAAL 508


>gi|294628378|ref|ZP_06706938.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
 gi|292831711|gb|EFF90060.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
          Length = 242

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 15/160 (9%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             +     FD ETTG+D + DRI+   AV + D   T      +L   G     EA  +H
Sbjct: 5   WYEGPLAAFDTETTGVDVETDRIVS-AAVVVQDAPGTRPRVSRWLVNPGVPVPREATAVH 63

Query: 64  GITDEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           G+T+E L+       P    I  +  +    +    +  NA FD+  ++ EL+R     L
Sbjct: 64  GLTEERLQRTGRWPAPVMYEIAEQLAE-QAARGRPLVVMNAPFDLTLLDRELRRHRASSL 122

Query: 119 DPS------RIID--TLSIARRKHPSSRNDLNSLCKRYGI 150
           +        R++D   L     ++   R  L  LC  Y +
Sbjct: 123 ERWFEGSPLRVLDPRVLDKHLDRYRKGRRTLTDLCAHYEV 162


>gi|297610461|ref|NP_001064570.2| Os10g0407500 [Oryza sativa Japonica Group]
 gi|255679392|dbj|BAF26484.2| Os10g0407500 [Oryza sativa Japonica Group]
          Length = 517

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 86/225 (38%), Gaps = 20/225 (8%)

Query: 9   KIVFDIET-----TGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGR-KNSPEALK 61
              FD+ET      G   +   ++E GA+ +         ++   + P      S  +++
Sbjct: 30  IAFFDVETSVPQRAG---QGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVR 86

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEWIAHNA-KFDVGFINAELQRINKDPL 118
            +GIT + +   P+F  +    +   +E      W  HN  +FD+  I      I + P 
Sbjct: 87  CNGITRDAVAAAPAFRDVADAVYSVLHEFSIGRVWAGHNIVRFDLARIREAFAEIGRPPP 146

Query: 119 DPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKM 174
           +P  +IDTL +  +K    +    + SL   +G+    R  H +L D  +  +V  Y   
Sbjct: 147 EPKGMIDTLPLLTQKFGRRAGDMKMASLANYFGL---GRQSHRSLDDVRMNLEVLKYCAT 203

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           ++       G  T E+   +   ++  N +          R + +
Sbjct: 204 VLFLEASLPGVLTVENLVERAITRSQANGAASPEVPKPVARSSPD 248


>gi|226364575|ref|YP_002782357.1| DNA polymerase III subunit epsilon [Rhodococcus opacus B4]
 gi|226243064|dbj|BAH53412.1| putative exonuclease [Rhodococcus opacus B4]
          Length = 247

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 9/160 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +      FD+ETTG D  + RI+      +  +   +RT+   L P        A 
Sbjct: 1   MTSWSDRPICAFDLETTGPDPTDARIVSACIAVVDAHHFESRTW--LLDPE-VPIPQGAS 57

Query: 61  KLHGITDEFLK-DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKD 116
            +HGI+ E+ +     +++ + E  D   +   ++   +A NA +D+  ++ E  R+   
Sbjct: 58  DVHGISTEYARAHGQDYATGYREIRDALYDAWTRDHAVVAFNASYDLTVMHTEGLRLGLP 117

Query: 117 PLDPSRIIDTLSIARRK--HPSSRNDLNSLCKRYGITISH 154
            L    ++D   I R    +   R  L ++C+ YGI +  
Sbjct: 118 ELVHGIVVDPYVIDREMDRYRKGRRTLGAVCEHYGIALED 157


>gi|295840123|ref|ZP_06827056.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
 gi|197696983|gb|EDY43916.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
          Length = 243

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 14/165 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +K R   FDIE+TG+D +  RI+    V  +       T      P+  +   EA  
Sbjct: 1   MTWHKQRYCAFDIESTGVDVETARIVT-ACVAQVRGGALPETRSWLADPSI-EIPDEATA 58

Query: 62  LHGI-TDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGI TD    +      +  E     +      A  +A NA++D+  ++ E +R  +  
Sbjct: 59  VHGITTDRARAEGRPAGEVVEEITTLLHSCLLAGAPVVAMNARYDLTLLDRECRRHERPT 118

Query: 118 L------DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISH 154
           L      D   ++D L + R+  ++   +  L +L + Y + +  
Sbjct: 119 LADRLGGDVRPVLDPLVLDRQVDRYRRGKRTLTALAEHYRVPLDG 163


>gi|153821463|ref|ZP_01974130.1| exonuclease family [Vibrio cholerae B33]
 gi|229509131|ref|ZP_04398618.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
           [Vibrio cholerae B33]
 gi|229608803|ref|YP_002879451.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Vibrio
           cholerae MJ-1236]
 gi|126521063|gb|EAZ78286.1| exonuclease family [Vibrio cholerae B33]
 gi|229353888|gb|EEO18823.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
           [Vibrio cholerae B33]
 gi|229371458|gb|ACQ61881.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Vibrio
           cholerae MJ-1236]
          Length = 301

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 20/177 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPE 58
           ++   ++ D ETTGL ++++ IIE+G V++L                ++  P G+     
Sbjct: 48  DEQPMVLLDTETTGLSAEDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDP-GKPIPEL 106

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DP 117
             +L GITD+ ++ +     I       +   +   +AHNA+FD  F       +     
Sbjct: 107 ITELTGITDDMVQGQ----HIDDSLVASWLSDDPLVVAHNAQFDRPFFEKRFAALGHLSW 162

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +  ID      +        L  L  R G        H A  D   ++ ++  +
Sbjct: 163 ACSASGID-----WKALGFESRKLEYLLLRLGWFYEG---HRAATDCLAMAWLFHLL 211


>gi|87302291|ref|ZP_01085116.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH
           5701]
 gi|87283216|gb|EAQ75172.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH
           5701]
          Length = 297

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
             R ++ D ETTGLD + D  IE+GAV     S+   +    L P        A  ++GI
Sbjct: 64  PQRLLILDTETTGLDPERDHCIEVGAVLFHVSSRAVLSQLSLLLPCQSN---TAEAINGI 120

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                + +  + +    F +     +   +AHNA FD  +         + PL       
Sbjct: 121 DAAVSRLEQPWQAGLLYFQELVASAD-VIVAHNAAFDRAWF-------GRGPLPAIDKPW 172

Query: 126 TLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             S+   + PS R       +  L   YGI +   + H AL D   L+ V+ +
Sbjct: 173 LCSMDDLRWPSERRLKATPSVRDLALAYGIPVW--AAHRALTDCIYLAQVFER 223


>gi|255013952|ref|ZP_05286078.1| hypothetical protein B2_08587 [Bacteroides sp. 2_1_7]
          Length = 192

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 77/186 (41%), Gaps = 19/186 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKLHGI 65
           M+ + FD+ETTG+    + + +I    ++D   T  +F   +CP+ + +   EAL++  +
Sbjct: 1   MKLLFFDLETTGIKYWRNGVHQISGEIVIDG-VTKESFNFNVCPHSQCEIEEEALRICNV 59

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNE--------QNAEWIAHNAK-FDVGFINAELQRINKD 116
           + E ++  P    ++ +F +  ++             + +N   FD  F+ A   +    
Sbjct: 60  SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQNGDH 119

Query: 117 PLDPSRII--------DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                  +         T  + R++H  +     ++ +  GI I     H A  D  L  
Sbjct: 120 YFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLTK 179

Query: 169 DVYIKM 174
           ++Y ++
Sbjct: 180 EIYNRI 185


>gi|255535519|ref|YP_003095890.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium
           3519-10]
 gi|255341715|gb|ACU07828.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium
           3519-10]
          Length = 1567

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 78/228 (34%), Gaps = 33/228 (14%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL    +          R+++I                  + P+G      
Sbjct: 18  YLIFDTETTGLPKNYNAPLTDSDNWPRMVQIAWQLHDRDGNLLENQDYIIKPDGYDIPFN 77

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQRINKD 116
           A ++HGI+ +    +      +  EF +   +  AE +A HN  FD     AE  R + D
Sbjct: 78  ASRIHGISTKMAHAEGRDLREVLIEFGEVLKK--AEVVAGHNIDFDYKIAGAEYHRQSLD 135

Query: 117 -PLDPSRIIDTLSIARRKH-----PSSRNDLNSLCKRYGITISHR--SKHGALLDSHLLS 168
             L+     DT+ +           + R     L + Y    + R    H A  D +  +
Sbjct: 136 NILEKIPSADTMELGTDYCKLGGGKNGRYKSPKLEELYTTLFNERFDEAHNAAADVNATA 195

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            ++ +MM                  ++ + T P +    R  P   R 
Sbjct: 196 QIFFEMMR-----------LRIIPSEKLRITEPELDEFIRSHPNPFRP 232


>gi|163788571|ref|ZP_02183016.1| DNA polymerase III, epsilon subunit [Flavobacteriales bacterium
           ALC-1]
 gi|159875808|gb|EDP69867.1| DNA polymerase III, epsilon subunit [Flavobacteriales bacterium
           ALC-1]
          Length = 398

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P F  +     +    ++   +AHN+ FD   +  E +R+        + + T+ 
Sbjct: 1   MLRNAPKFYEVAKRIVEI--TEDCIIVAHNSSFDYRILKTEFKRLGFPF--KRKTLCTVE 56

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           ++++  P      L  L +  GI +S R  H A  D+     ++ KM++
Sbjct: 57  LSKQLIPDMESYSLGKLTRALGIPVSDR--HRANGDAVATVKLF-KMLL 102


>gi|308067866|ref|YP_003869471.1| Inhibitor of the KinA pathway to sporulation, exonuclease
           [Paenibacillus polymyxa E681]
 gi|305857145|gb|ADM68933.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Paenibacillus polymyxa E681]
          Length = 230

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 72/178 (40%), Gaps = 13/178 (7%)

Query: 6   KMRKIVFDIE-TTGLDSK-NDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKN-SPEA 59
           +M+ I++D+E T   +++ +  II+IGAV+++   D      TF  F+ P+ R   S + 
Sbjct: 7   EMQYIIYDLEFTVSRNARYSSEIIDIGAVKVVQGDDGLYVADTFHSFVRPSNRPVLSTDT 66

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           ++  GIT   +   P F     +F  +   +      A     D   + +  +  + D  
Sbjct: 67  VQFTGITQRDIDAAPLFPEAVKQFVTWLGTDSPYYLCAW-GPDDRQKLVSHCRTHHVDLG 125

Query: 119 DPSRIIDTLSI-ARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 D     +R    + +     L+   +   I    +  H AL D+   + V++
Sbjct: 126 WIHNTNDIQKQISRLLSSNGKYRQLSLSQALELCNIDFDGQQ-HRALDDAVNTAQVFM 182


>gi|26987095|ref|NP_742520.1| DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440]
 gi|24981722|gb|AAN65984.1|AE016227_5 exonuclease [Pseudomonas putida KT2440]
          Length = 236

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 84/199 (42%), Gaps = 10/199 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L    +K +   L +
Sbjct: 36  LREQRWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHRPLQKTNASVL-I 94

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+    L      +    +  DF    N+  +A +A FD   +   L+      L  S 
Sbjct: 95  HGLGPSALAAGCDPAEALLDLLDFIG--NSPVLAFHAPFDQRMLARALKESLGYRL-QSP 151

Query: 123 IIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +D   +A   +P +      L+    R+G+ +  R  H A  D+ + +++ + +     
Sbjct: 152 FLDIAELAPMLNPDTVLREAGLDDWVARFGLQVEER--HHASADAQVTAELALILFSQAR 209

Query: 180 QINFGFKTNEDRFFKEEKK 198
           +         ++  +  ++
Sbjct: 210 RQQLDSPLQLEQRLRGWRR 228


>gi|312140266|ref|YP_004007602.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S]
 gi|311889605|emb|CBH48922.1| putative DNA polymerase III epsilon subunit [Rhodococcus equi 103S]
          Length = 228

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 12/170 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M          FD+ETTG D  + RI+    V +    + +R+    + P G +   +A 
Sbjct: 1   MTHWTTRPICAFDLETTGRDPLSARIVTGSVVTV--GGEGHRSRNWIVDP-GVEIPVDAA 57

Query: 61  KLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116
            +HGI+    +++   ++S + E      +  A     +A NA +D+  ++AE +R+   
Sbjct: 58  AVHGISTAQARERGQDYASGYREIRSALTDAWAAGHVVVAFNAAYDLTVLDAEGRRLGWP 117

Query: 117 PLD-PSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLD 163
           PL     ++D   I R        +  L++LC+ YG+ ++  + H A  D
Sbjct: 118 PLSGYGLVVDPYVIDREMDRDRRGKRTLSALCEHYGVVLA--AAHEAESD 165


>gi|210622633|ref|ZP_03293293.1| hypothetical protein CLOHIR_01241 [Clostridium hiranonis DSM 13275]
 gi|210154134|gb|EEA85140.1| hypothetical protein CLOHIR_01241 [Clostridium hiranonis DSM 13275]
          Length = 273

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 73/198 (36%), Gaps = 18/198 (9%)

Query: 7   MRKIVFDIETT-GLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPN-GRK 54
           M  IVFD+E   G + K +           II++GAV+L         F  F+ P     
Sbjct: 5   MEYIVFDLEFNQGFNKKTNKTFSDNACPFEIIQLGAVKLDSNFNIIAAFDTFIKPCLYTS 64

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P   K+ GI  E L++ P+F   F +F +F    +  +     K D+  +   ++  N
Sbjct: 65  MHPYVAKITGICMEDLENAPTFKEAFKKFTEFVASDDPIFCVW-GKSDLRELYRNIKYHN 123

Query: 115 KDPLD-PSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              L  P   ID    A             L +      +     + H AL D++  + V
Sbjct: 124 LPDLSLPKSYIDVQYYASDFINHTTAQSIGLENAVIALNLE-DTVAYHNALNDAYYTAKV 182

Query: 171 YIKMMVGGSQINFGFKTN 188
           +  +     + N    TN
Sbjct: 183 FASINPKAIKPNIYIYTN 200


>gi|282864742|ref|ZP_06273796.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE]
 gi|282560167|gb|EFB65715.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE]
          Length = 243

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 13/162 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  ++ R   FD+ETTG D    RI+    V +          + +L   G +   +A  
Sbjct: 1   MSWHRERLAGFDLETTGTDPLEARIVTAAVVAVESSGGEAAGCRTWLADPGVRIPEQASA 60

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGI+ E    +      +  E      E        +A+NA FD+  ++AEL+R     
Sbjct: 61  IHGISSERAAAEGRPVREVADEIAGILVEHWRAGVPVVAYNAAFDLTLLSAELRRHGLPS 120

Query: 118 LDP-------SRIID--TLSIARRKHPSSRNDLNSLCKRYGI 150
           L           +ID  T+  A  ++   +  L ++C  Y +
Sbjct: 121 LSERLGGAGIGPVIDPYTIDRAVDRYRKGKRTLEAVCVEYDV 162


>gi|156392522|ref|XP_001636097.1| predicted protein [Nematostella vectensis]
 gi|156223197|gb|EDO44034.1| predicted protein [Nematostella vectensis]
          Length = 461

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 39/207 (18%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +   +    ++FD ETTGLD+ ND II++      +    +     ++ P GR    EA 
Sbjct: 148 LTEGDDYTFVMFDTETTGLDTSNDVIIQLAC-ASENGDPLH---SRYMFPGGRSIGSEAT 203

Query: 61  KLHGITDEF-------LKDKPSFSSI------FSEFWDFFN------EQNAEWIAHN-AK 100
             HGI++ F       LKD    + +        EF  F         +    +AH    
Sbjct: 204 NAHGISEAFIDGSRVLLKDGRPLADVASQKDGLREFIAFLKMHQSQSPKRLCLVAHYGDS 263

Query: 101 FDVGFINAELQRINKDPLDPSRI---IDTLSIARRKHPSSRN---------DLNSLCKR- 147
           FD   +   L+R N      S     +D++ + R      ++          L++L    
Sbjct: 264 FDFRLLINCLKRHNLMNEFISTGSVLLDSVKVVRASKKQEKSPFDSSFKKESLSALHGHL 323

Query: 148 YGITISHRSKHGALLDSHLLSDVYIKM 174
           +G+ I     H A  D+  LS V +K+
Sbjct: 324 FGVPID--RPHDAQADACALSKVLMKI 348


>gi|148545634|ref|YP_001265736.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1]
 gi|148509692|gb|ABQ76552.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1]
          Length = 236

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 83/199 (41%), Gaps = 10/199 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L    +K +   L +
Sbjct: 36  LREQRWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHRPLQKTNASVL-I 94

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+    L      +    +  DF    N+  +A +A FD   +   L+      L    
Sbjct: 95  HGLGPSALAAGCDPAEALLDLLDFIG--NSPVLAFHAPFDQRMLARALKETLGHRLQSM- 151

Query: 123 IIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +D   +A   +P +      L+    R+G+ +  R  H A  D+ + +++ + +     
Sbjct: 152 FLDVAELAPMLNPDTVLREAGLDDWVARFGLQVEER--HHASADAQVTAELALILFSQAR 209

Query: 180 QINFGFKTNEDRFFKEEKK 198
           +         ++  +  ++
Sbjct: 210 RQQLDSPLQLEQRLRGWRR 228


>gi|46205666|ref|ZP_00048224.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 187

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 65/165 (39%), Gaps = 18/165 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL- 70
            D ETTGLD   DR++    V     +   RT+   L P G +   EA  +HGIT+    
Sbjct: 14  LDTETTGLDVDVDRVVTAALVLREPGATHVRTW--LLDP-GVEIPAEATGIHGITNAHAT 70

Query: 71  ----KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL------DP 120
                   +   I +   D   +     +A+NA FD+  ++ EL R     L        
Sbjct: 71  AHGSAPAVALDEIATLVVDAQRD-GVPLVAYNAAFDLAILDTELVRHGLPTLAARLGRPV 129

Query: 121 SRIIDTLSIARRKHP--SSRNDLNSLCKRYGITISHRSKHGALLD 163
             ++D L + R   P    +  L  LC RY + +     H A  D
Sbjct: 130 RPVLDPLVLDRAWDPARDGKRRLVDLCARYEV-LDVGRLHTADGD 173


>gi|257454169|ref|ZP_05619440.1| exonuclease, Ycg4D [Enhydrobacter aerosaccus SK60]
 gi|257448430|gb|EEV23402.1| exonuclease, Ycg4D [Enhydrobacter aerosaccus SK60]
          Length = 217

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 17/174 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +++ FD ET G   + D+IIEI   +   +   +      +    R +SP A K+HGI  
Sbjct: 48  KRLFFDTETIGG-GREDQIIEIAFCDSDRHVIID----TLIY-TDRTSSPGAFKVHGIYP 101

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-----ELQRINKDPLDPSR 122
             L  KP+F  I          +     A+NA FD+  +        LQ++    L   +
Sbjct: 102 HELIGKPTFIDIQPAIVQLLKGR--TLYAYNANFDIRMMRQSGHKLRLQQVGIKCLCK-Q 158

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             D +        ++R   L+  C  +GI   H + H A  D+     V+  M+
Sbjct: 159 FADFIGQYSPYFKANRYFSLSKACLHFGIE--HSNAHRARPDALACVTVWQGMV 210


>gi|313496718|gb|ADR58084.1| DNA polymerase III, epsilon subunit [Pseudomonas putida BIRD-1]
          Length = 236

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 84/199 (42%), Gaps = 10/199 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L    +K +   L +
Sbjct: 36  LREQRWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHRPLQKTNASVL-I 94

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+    L      +    +  DF    N+  +A +A FD   +   L+      L  S 
Sbjct: 95  HGLGPSALAAGCDPAEALLDLLDFIG--NSPVLAFHAPFDQRMLARALKESLGYRL-QSP 151

Query: 123 IIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +D   +A   +P +      L+    R+G+ +  R  H A  D+ + +++ + +     
Sbjct: 152 FLDIAELAPMLNPDTVLREAGLDDWVARFGLQVEER--HHASADAQVTAELALILFSQAR 209

Query: 180 QINFGFKTNEDRFFKEEKK 198
           +         ++  +  ++
Sbjct: 210 RQQLDSPLQLEQRLRGWRR 228


>gi|227504454|ref|ZP_03934503.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC
           6940]
 gi|227199102|gb|EEI79150.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC
           6940]
          Length = 214

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 15/182 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEA 59
            R   +  +  D+ETT LD +   I+ IG V  ++    +      V +         ++
Sbjct: 20  TRLEDLPLLAVDMETTSLDPREGAIVSIGWV-PINGGVIDLGGADYVLIKGATAGQIEQS 78

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +H +T + +    +     S   +    Q    +AH A  +VGF+ A  +RI      
Sbjct: 79  VHIHMLTQDVVDAGVAEKEGISRLREAL--QGRALLAHFAALEVGFLKAACKRI-YGAAP 135

Query: 120 PSRIIDTLSIARR------KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              ++DT ++ RR       +P   +  L  + +RYG+       H AL D+   +++++
Sbjct: 136 RLDVVDTFALERRHMERMATYPRGEDLRLARVRQRYGLPNYGN--HNALSDAQACAELFL 193

Query: 173 KM 174
            M
Sbjct: 194 AM 195


>gi|212634795|ref|YP_002311320.1| exonuclease [Shewanella piezotolerans WP3]
 gi|212556279|gb|ACJ28733.1| Exonuclease [Shewanella piezotolerans WP3]
          Length = 225

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 15/183 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEAL 60
           I    +  +  D+E TGL+ + D+I+ IG V + +   +        +   G  +  ++ 
Sbjct: 35  IPLADIPLMAIDLEMTGLNVQFDQILSIGMVPIQNGMLQLKDADYRLVSIEG--SVGDSA 92

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGI D  L+   S +     F +    +    IAH+A  D+ F+ AE+ R   +    
Sbjct: 93  AIHGIVDGQLETAISANEAMHWFLE--KTKGHVLIAHHAPLDLCFLKAEIFRCFGEK-MT 149

Query: 121 SRIIDTLSIARRK-------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              IDT+S+ R +              L++   RYG+ I   + H A +D+    ++ + 
Sbjct: 150 FVSIDTMSLERARILRQHEVIKEGSLRLDACRSRYGLPIY--AAHNAAVDALSCGELLLA 207

Query: 174 MMV 176
            M 
Sbjct: 208 QMA 210


>gi|303235624|ref|ZP_07322231.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
 gi|302484071|gb|EFL47059.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
          Length = 893

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 12/166 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGIT 66
           +VFD ETTGLD   D IIEI A+ L +         +++    P   K       L+ I 
Sbjct: 513 VVFDTETTGLDVYEDDIIEIAAIRLHNGKPVGEPLDLYIETNRPILEKLGENENPLYPIY 572

Query: 67  DEFLKDKPSFS--SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122
            E L           F  FW++    +A  + HN  +D   ++  L R  +D ++   + 
Sbjct: 573 HEKLAKGELLQPNEAFQLFWNYVG--DATLLGHNVMYDRNILHHNLLRHAQDCMENHANP 630

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           + D+L I R   P+     L +L +R+ +     + H A+ D    
Sbjct: 631 VFDSLKIMRLLQPNLPSYKLETLLERFQLV--GENSHKAIDDVAAT 674


>gi|89052623|ref|YP_508074.1| exonuclease [Jannaschia sp. CCS1]
 gi|88862172|gb|ABD53049.1| Exonuclease [Jannaschia sp. CCS1]
          Length = 196

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 15/172 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
             R I  D+ET   ++    I +IG    +    +  T    + P  +  SP    LHGI
Sbjct: 14  PFRFIAVDVETA--NNAQGSICQIGLC-CVGSDDSLNTVSTLIDPE-QSFSPFNTDLHGI 69

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + E +   P+F   ++  +   N      + H ++FD     A   R +  P+  S   D
Sbjct: 70  SAETVNGAPTFPQAYASLYPVLNAHR--LVQH-SRFDEAAFTAACARYDV-PMVTSHWTD 125

Query: 126 TLSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++ IAR+  P  +    + L SL K  G++  H   H A  D+   + V ++
Sbjct: 126 SVKIARQAWPELKGAGGHGLASLKKALGLSFHH---HDAGEDARASATVILR 174


>gi|262273269|ref|ZP_06051084.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
 gi|262222642|gb|EEY73952.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
          Length = 207

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 69/177 (38%), Gaps = 9/177 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETT LD     ++ I A ++   +                 + +++K+HGI  + 
Sbjct: 31  VALDCETTSLDPHKAELVTIAATKIRGNTIVTSDPLTLSLRAPHSLTEQSVKIHGIRHQD 90

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D  +         +F   +    + +   +D   ++   ++     L  S I  +   
Sbjct: 91  LHDGVTEKEAMQALIEFAGNR--PIVGYYIHYDKTILDRYTRKHLGFKLPNSTIEVSDIY 148

Query: 130 ARRK---HPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            R+     P++  DL   ++    G+ +S R  H AL D+   + +YI++  G   I
Sbjct: 149 RRKLEQILPNAYYDLSMEAIGHHLGLPLSGR--HDALDDAISAALIYIRLKYGDVSI 203


>gi|195657335|gb|ACG48135.1| hypothetical protein [Zea mays]
          Length = 458

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 13/172 (7%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL-KL 62
           ++   +  D+ET    +    ++E GAV +         +F   + P      P+   + 
Sbjct: 11  DREEIVFLDVET---STPPCVLLEFGAVVVCSRRLVEVSSFATLVRPANLDALPDPTARS 67

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPS 121
           +GIT   L D P F  +    +D  + +   W  HN   FD   I      I + P  P 
Sbjct: 68  NGITRGTLADAPPFGDVADMVYDVLHGR--VWAGHNIVHFDSMIIMDAFAEIGRPPPQPK 125

Query: 122 RIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL +  +     +    L SL   +G+    + +H +L D  +  DV+
Sbjct: 126 AMIDTLPLLTQCFGPRAGDMKLASLANYFGL---GKQRHRSLDDVKMNIDVF 174


>gi|331002829|ref|ZP_08326343.1| hypothetical protein HMPREF0491_01205 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413318|gb|EGG92686.1| hypothetical protein HMPREF0491_01205 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 220

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 75/183 (40%), Gaps = 20/183 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRI-------IEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPE 58
           M+ IV D+E  G++ K  RI       IEIGA+ L +  +   +F+ ++ P    K    
Sbjct: 1   MKHIVVDLEMNGIE-KKHRIFGCTMETIEIGAIMLDENYQEISSFKTYVKPEYNSKIEKN 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFF--NEQNAEWIAHNAKFDVGFINA--ELQRIN 114
             +L GIT+  + + P F+    +F D+    + +    A +   D   I     L+R +
Sbjct: 60  ISRLTGITNNMVVNAPKFNEALKKFSDWCLAADDDIRIYAWSKN-DYKQIAKEIRLKRYD 118

Query: 115 KDPLDPSRIIDTLSIARRKHPSS-----RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             P +    ++  +  + +  +      +  L       GI    R  H AL D+   + 
Sbjct: 119 IRPEESMVYLNEWNDFQEEFDTELGFERQISLKLALDMAGIDFLGRE-HSALDDARNTAK 177

Query: 170 VYI 172
           ++ 
Sbjct: 178 LFH 180


>gi|227875810|ref|ZP_03993936.1| possible DNA-directed DNA polymerase III [Mobiluncus mulieris ATCC
           35243]
 gi|227843558|gb|EEJ53741.1| possible DNA-directed DNA polymerase III [Mobiluncus mulieris ATCC
           35243]
          Length = 143

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 6   KMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKL 62
            MR  +  D ET   + +      +G V      K + ++   L P+   +  +P  + +
Sbjct: 2   PMREFVAIDFETA--NEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWV 59

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGIT E ++D P +S I  +   F  ++    +AHN  FD   ++        + + P+R
Sbjct: 60  HGITSEDVQDAPQWSDIADQVMTFIGDR--PIVAHNMAFDGYVLSDLASLYGTEEI-PNR 116

Query: 123 IIDTLSIARR 132
              T+ +AR+
Sbjct: 117 RFCTVRLARK 126


>gi|19552509|ref|NP_600511.1| DNA polymerase III epsilon subunit [Corynebacterium glutamicum ATCC
           13032]
 gi|21324057|dbj|BAB98682.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
           [Corynebacterium glutamicum ATCC 13032]
          Length = 218

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 15/180 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK--NSPEA 59
            R   ++ +  D+ETTGL     +I+ IG V  ++    + +   ++   G +  +   +
Sbjct: 29  TRIEDLKLLAVDVETTGLKPHRHQIVSIGWV-PINGDVIDLSGAGYVVIRGSEGFSVGSS 87

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +H +TD+ +           +       Q    +AH +  +  FI+A   +     LD
Sbjct: 88  AVIHQLTDDEIAAGIDIKEALGQLLQAL--QGRAMLAHFSPIERDFISAACLKHFGTLLD 145

Query: 120 PSRIIDTLSIARR------KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              ++DT ++ RR       +P   +  L  + +RYG+   + S H AL D+   ++VY+
Sbjct: 146 V-PLVDTFAMERRHMERMSTYPRGEDLRLARIRQRYGLP--NYSNHQALTDALACAEVYL 202


>gi|25027941|ref|NP_737995.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
 gi|259506334|ref|ZP_05749236.1| DNA polymerase III, epsilon subunit [Corynebacterium efficiens
           YS-314]
 gi|23493224|dbj|BAC18195.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
 gi|259166114|gb|EEW50668.1| DNA polymerase III, epsilon subunit [Corynebacterium efficiens
           YS-314]
          Length = 227

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 15/182 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--NRTFQVFLCPNGRKNSPEALK 61
            +++  +  D+ETTGL     +I+ IG V +           ++V     G      A+ 
Sbjct: 40  LDELPLLAVDVETTGLKPDEHQIVSIGWVPVTGRVIELGGAGYRVIRGTEGFTVGSSAV- 98

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H +TD+ L           E       +    +AH A  +  F++A   +    PL   
Sbjct: 99  IHRLTDDELAAGVDLEDALVELLAALKGR--VLLAHFAPMEQNFLSAACLKYFDAPL-QL 155

Query: 122 RIIDTLSIARR------KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++DT +I RR       +P   +  L  +  RYG+     S H AL D+   +++Y+  
Sbjct: 156 PVVDTFAIERRHMEKMSTYPRGEDLRLARVRTRYGLP--QYSNHQALTDALACAELYLAQ 213

Query: 175 MV 176
           + 
Sbjct: 214 IR 215


>gi|332076082|gb|EGI86548.1| exonuclease family protein [Streptococcus pneumoniae GA41301]
          Length = 140

 Score = 93.0 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 7/123 (5%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E T   SK  +II++G V + D    +  +   + P+         +L G+TD
Sbjct: 7   RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L   P FS +  + +D    ++  ++AHN +FD   +   L     +  +P   +DT+
Sbjct: 64  QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119

Query: 128 SIA 130
            +A
Sbjct: 120 ELA 122


>gi|296273413|ref|YP_003656044.1| exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis
           DSM 7299]
 gi|296097587|gb|ADG93537.1| Exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis
           DSM 7299]
          Length = 252

 Score = 93.0 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 26/184 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++FD ETTG + + DRII++GA+ ++D       +    C +  +   EA+++H IT 
Sbjct: 3   KYVLFDTETTG-NQEEDRIIQLGAM-IVDAKAPVEVYDEL-CFSDVEIKLEAMEVHNITP 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           + +  KP  +   ++F+    E N      IAHN  FD+G I  E            +I+
Sbjct: 60  DMIIGKPEATQ--TKFYQKLQEYNNPSNYLIAHNINFDLGMIKKE------GFESQYQIL 111

Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRS----------KHGALLDSHLLSDVYIK 173
           DTL  A+   P    + L  L     I +               H A+ D  ++  +++ 
Sbjct: 112 DTLRCAQHLFPELPYHRLQYLRYALDIYMDEEEEAAKHNITIKAHDAIGDVLVM-KLFLS 170

Query: 174 MMVG 177
            +V 
Sbjct: 171 QLVA 174


>gi|307700293|ref|ZP_07637333.1| exonuclease [Mobiluncus mulieris FB024-16]
 gi|307614504|gb|EFN93733.1| exonuclease [Mobiluncus mulieris FB024-16]
          Length = 141

 Score = 93.0 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 8/129 (6%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLH 63
           MR  +  D ET   + +      +G V      K + ++   L P+   +  +P  + +H
Sbjct: 1   MREFVAIDFETA--NEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWVH 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E ++D P +S I  +   F  ++    +AHN  FD   ++        + + P+R 
Sbjct: 59  GITSEDVQDAPQWSDIADQVMTFIGDR--PIVAHNMAFDGYVLSDLASLYGTEEI-PNRR 115

Query: 124 IDTLSIARR 132
             T+ +AR+
Sbjct: 116 FCTVRLARK 124


>gi|256832848|ref|YP_003161575.1| DNA polymerase III, epsilon subunit [Jonesia denitrificans DSM
           20603]
 gi|256686379|gb|ACV09272.1| DNA polymerase III, epsilon subunit [Jonesia denitrificans DSM
           20603]
          Length = 298

 Score = 93.0 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 5/146 (3%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ETTGL S+NDR+IE+  V    +      ++  + P  R  + + +        
Sbjct: 4   YAVIDVETTGLSSRNDRVIELAVVHTDTHGTITGHWETLINPQ-RNLTAQHIHHI--HAS 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P F+ I ++     + +    +AHNA FD  F+ AEL R  K        + T++
Sbjct: 61  HIQHAPLFADIATDLLTLLDGR--VPVAHNAPFDARFLAAELHRTGKTLHQQHDFLCTMN 118

Query: 129 IARRKHPSSRNDLNSLCKRYGITISH 154
           ++RR  P     L        IT + 
Sbjct: 119 LSRRYLPGVGKPLADCLAATNITNTG 144


>gi|288802867|ref|ZP_06408304.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18]
 gi|288334684|gb|EFC73122.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18]
          Length = 896

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 66/183 (36%), Gaps = 36/183 (19%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N+   +VFD ETTGL+   D IIEI A+ +           +++  +             
Sbjct: 510 NEEEIVVFDTETTGLNVFQDDIIEIAAIRIKGGEVVGEPLDLYIETDKPILP-------- 561

Query: 65  ITDEFLKDKP-----------------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
                L DK                  S S     F  +     +  + HNA +D   ++
Sbjct: 562 ----MLGDKENPMYAIYHEKMSTGELLSPSDALQRFLAYVGT--SPILGHNANYDYNILD 615

Query: 108 AELQRINKDPL--DPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164
             LQR  KD +     R  D+L + R   PS     L SL + +   ++  + H A+ D 
Sbjct: 616 NNLQRYCKDTMQAHDIRCFDSLKLIRLLAPSLHSYKLESLLETFH--LAGVNSHQAIDDV 673

Query: 165 HLL 167
              
Sbjct: 674 KAT 676


>gi|58000402|ref|YP_190104.1| YacC [Escherichia coli]
 gi|219586145|ref|YP_002456239.1| YacC [Escherichia coli]
 gi|57903302|gb|AAW58931.1| YacC [Escherichia coli]
 gi|218931728|gb|ACL12501.1| YacC [Escherichia coli]
 gi|323958954|gb|EGB54627.1| exonuclease [Escherichia coli H489]
          Length = 282

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 15/168 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD      +EIG  +          F+ +L P       +A  +HGI+++
Sbjct: 104 PLFLDTETTGLD-NTAEALEIGLTDAAGQVV----FETWLKPTVA-IGAQAAAVHGISEQ 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            L   PS++ +  +      ++    I  NA+FD+  +       +   D L+   +   
Sbjct: 158 ALCGAPSWTDVARQLRHAIGDR--PVIIFNARFDIRILKQTAAAHSDPADWLEELTVYCA 215

Query: 127 LSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +A   + ++       L S   + G+T      H A+ D+ + + V
Sbjct: 216 MELAAGYYGATNRYGTISLASAASQAGLTWEG-QAHSAIADARMAAGV 262


>gi|182417499|ref|ZP_02948826.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           5521]
 gi|237666097|ref|ZP_04526085.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182378668|gb|EDT76195.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           5521]
 gi|237659044|gb|EEP56596.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 270

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 84/201 (41%), Gaps = 7/201 (3%)

Query: 25  RIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            II+IGAV+L D  +   TF   + P+  ++  P   +L GI  E +  +  F S++ EF
Sbjct: 54  EIIQIGAVKLNDNFEIIATFNRLIKPSLYKEIHPFIEELTGINTEMVATEKHFPSVYKEF 113

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIIDTLSIARRKHPSSRND-- 140
             F    +          D+  +   +   + +  +   + ID  ++A ++  + + +  
Sbjct: 114 LKFIGSNDFVMCVWGID-DIKQLIRNIHYHSLNIHNNIKKYIDIQNLASKEFNTPKGNRL 172

Query: 141 -LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT 199
            L +  + + I I +   H AL D+     V+ K+     + +     N +R      K 
Sbjct: 173 GLKTAVEFWNIPIQN-DFHNALNDAVYTCHVFKKVFNKNLKPSIYSNPNYNRIPTNSLKV 231

Query: 200 VPNISLLKRDKPLFTRITKEE 220
                + + +K    ++TKEE
Sbjct: 232 DTEKLISQFEKMFGRKMTKEE 252


>gi|15891836|ref|NP_357508.1| DNA polymerase III subunit epsilon [Agrobacterium tumefaciens str.
           C58]
 gi|15160320|gb|AAK90293.1| polymerase epsilon subunit [Agrobacterium tumefaciens str. C58]
          Length = 326

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 60/166 (36%), Gaps = 15/166 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGLD + D IIEIG +     D         ++  L   G     +  +L GI
Sbjct: 74  VILDTETTGLDHRTDEIIEIGVITFTFDDQGAIGDVTGIYGGLRQPGVAIPEDITRLTGI 133

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           TDE +  + S               +   IAHNA FD  F     +  +    D +    
Sbjct: 134 TDEMVAGQ-SID--MMRLTSLIAHADL-IIAHNAGFDRPF----CEAFSPIFRDKAWACS 185

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              I  R      N L  L    G +      H A+ D   L +V 
Sbjct: 186 VSEIDWRVRGFEGNKLGYLI---GQSGYFHDGHRAVDDCFALLEVL 228


>gi|62390175|ref|YP_225577.1| DNA polymerase III, epsilon subunit [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325511|emb|CAF19991.1| DNA POLYMERASE III, EPSILON SUBUNIT, PUTATIVE [Corynebacterium
           glutamicum ATCC 13032]
          Length = 197

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 15/180 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK--NSPEA 59
            R   ++ +  D+ETTGL     +I+ IG V  ++    + +   ++   G +  +   +
Sbjct: 8   TRIEDLKLLAVDVETTGLKPHRHQIVSIGWV-PINGDVIDLSGAGYVVIRGSEGFSVGSS 66

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +H +TD+ +           +       Q    +AH +  +  FI+A   +     LD
Sbjct: 67  AVIHQLTDDEIAAGIDIKEALGQLLQAL--QGRAMLAHFSPIERDFISAACLKHFGTLLD 124

Query: 120 PSRIIDTLSIARR------KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              ++DT ++ RR       +P   +  L  + +RYG+   + S H AL D+   ++VY+
Sbjct: 125 V-PLVDTFAMERRHMERMSTYPRGEDLRLARIRQRYGLP--NYSNHQALTDALACAEVYL 181


>gi|157283974|ref|YP_001468242.1| exonuclease RNase T and DNA polymerase III [Kineococcus
           radiotolerans SRS30216]
 gi|151363116|gb|ABS06118.1| Exonuclease RNase T and DNA polymerase III [Kineococcus
           radiotolerans SRS30216]
          Length = 203

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 14/168 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D E+T LD +   ++EI   ++         F   + P      P A  +HGI DE 
Sbjct: 50  VLLDTESTALDGQ---LVEIAITDVHGAPL----FSSLVRPTT-PVDPGARAVHGIGDEE 101

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+D P    +  +       +    IA+NA+FD G +  E +RI  D L  +R    +  
Sbjct: 102 LQDAPDLLMVAPQLRAALAGR--HVIAYNARFDRGLLRREGERIGVDLLSSTRWGCGMHC 159

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             R     R  ++S  +    +    ++H A+ D   L++V  ++  G
Sbjct: 160 YTRF----RGRVDSRGRHLRASRLPGARHRAVGDCRSLAEVLQEIAAG 203


>gi|170724006|ref|YP_001751694.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           W619]
 gi|169762009|gb|ACA75325.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           W619]
          Length = 236

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 80/192 (41%), Gaps = 10/192 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
               R +V D+ET+GL+   D+++ IGAV + D +   ++ F+  L    +K +   L +
Sbjct: 36  LRDQRWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFSQQFERTLHRPAQKTNASVL-I 94

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+    L      +    E  +F    ++  +A +A FD   +   L+      L    
Sbjct: 95  HGLGPSALAAGSDPAEALLELLEFIG--DSPVLAFHAPFDQRMLARALKETLGHRLQL-P 151

Query: 123 IIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +D   +A   +P +      L+    R+G+ +  R  H A  D+ + +++ + +     
Sbjct: 152 FLDVAELAPMLNPDTVLREAGLDDWVARFGLQVDER--HHASADAQVTAELALILFSQAR 209

Query: 180 QINFGFKTNEDR 191
           +         ++
Sbjct: 210 RQQLDSPLQLEQ 221


>gi|119944051|ref|YP_941731.1| exonuclease, RNase T and DNA polymerase III [Psychromonas
           ingrahamii 37]
 gi|119862655|gb|ABM02132.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas
           ingrahamii 37]
          Length = 228

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 17/163 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHGITD 67
           +  DIE TGLD K D+++ IG + +++  K    F     +   G  +  ++  +HG+ D
Sbjct: 44  LALDIEMTGLDPKKDQMVSIGIIPIINA-KIQPEFAQHKLIKIQG--SVGQSAVIHGVLD 100

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L D           ++   ++    +AH+A+ D+ F+   L +           IDTL
Sbjct: 101 KDLADALPLEEALQWLFEQCKDK--VLVAHHAQLDLQFLQQSLSKSGAHSFSM-LAIDTL 157

Query: 128 SIAR----RKHPSSRN---DLNSLCKRYGITISHRSKHGALLD 163
            I +    RKH   +     LN+   RY + I +   H AL D
Sbjct: 158 IIEKERELRKHQVLKTGSLRLNACRDRYNLPIYN--AHNALTD 198


>gi|16262589|ref|NP_435382.1| DNA polymerase III subunit epsilon [Sinorhizobium meliloti 1021]
 gi|307319072|ref|ZP_07598502.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti
           AK83]
 gi|14523204|gb|AAK64794.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306895179|gb|EFN25935.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti
           AK83]
          Length = 325

 Score = 92.6 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 68/186 (36%), Gaps = 21/186 (11%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALK 61
            +R ++ D ETTGLD++   IIEIG V     +  +      V+  L        P+  +
Sbjct: 67  PLRGVILDTETTGLDARKCEIIEIGLVSFTYNEEGEIGDVVAVYGGLQQPTIAIPPDITR 126

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GITD  +  + S     +         +   IAHNA FD  F  A       D     
Sbjct: 127 LTGITDAMVAGQ-SID--IAAVQAIVGPADL-IIAHNAGFDRPFCEAFS-----DVFVRK 177

Query: 122 RIIDTLS---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               ++S    + R    ++  L  L    G +      H A+ D   L  V  +   G 
Sbjct: 178 AWACSVSEIDWSGRGFEGTK--LGYLI---GQSGYFHDGHRAVDDCFALLGVLEQSSGGA 232

Query: 179 SQINFG 184
           +   F 
Sbjct: 233 ALPPFA 238


>gi|88703626|ref|ZP_01101342.1| Exonuclease family [Congregibacter litoralis KT71]
 gi|88702340|gb|EAQ99443.1| Exonuclease family [Congregibacter litoralis KT71]
          Length = 221

 Score = 92.6 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 69/176 (39%), Gaps = 15/176 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHG 64
           K+  +V D E +GLD +   ++ +G V +            + +    R++  ++  +H 
Sbjct: 38  KLDFLVCDAEMSGLDPRQAELLSLGWVRVSGLEIALGSARHLLIRN--RESVGQSATIHQ 95

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           + D  L+D                 +    + HNA  D  F++   + +   PL     I
Sbjct: 96  LRDCELRDAGDVKEGLEALLAAAGGR--VLVFHNAALDTAFLDYAAKAVFGAPLLL-PTI 152

Query: 125 DTLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           DTL + +R               L +  +RYG  ++  + H AL D+   +++ + 
Sbjct: 153 DTLLLEKRLLQRQERPIGQGDLRLGACRERYG--LTTHNAHNALGDAMATAELLLA 206


>gi|284037590|ref|YP_003387520.1| exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
           74]
 gi|283816883|gb|ADB38721.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
           74]
          Length = 205

 Score = 92.6 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 65/192 (33%), Gaps = 28/192 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGI 65
           M  +V D+E TG +   + II+IGAV   D       +   + P  +   S  + K+H +
Sbjct: 1   MPFLVLDLEMTGPEPDYNEIIQIGAVLFDDNWVERGQYLTNVYPENKDAFSSSSEKIHNL 60

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQ-----------------NAEWIAHNAKFDVGFINA 108
           +   L+D P    +  E  ++   Q                 +      +   D+ F+  
Sbjct: 61  SLAELEDAPMIYDVLPEMEEWICTQLGLRVPKGQLDRTPYLRDLIICGQSVINDINFLKE 120

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHG 159
             +   +       ++D  ++A       +           L ++   +G        H 
Sbjct: 121 AYRYEKQKWPYSRVLLDLHTLAYFTFRVLKANGRKVPDRLSLTAIASYFGFARED-GFHN 179

Query: 160 ALLDSHLLSDVY 171
           AL D+ L +   
Sbjct: 180 ALEDAVLTAKCL 191


>gi|310816220|ref|YP_003964184.1| Exonuclease [Ketogulonicigenium vulgare Y25]
 gi|308754955|gb|ADO42884.1| Exonuclease [Ketogulonicigenium vulgare Y25]
          Length = 200

 Score = 92.6 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
             R +  D+ET   + +   I +IG   +   + T  T+   + P         + +HGI
Sbjct: 16  PFRFLALDVETA--NYRAHSICQIGIAAVRPDN-TIETWTTLIDPED-DFVANNIAIHGI 71

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E +   P F+  F +     +      I  ++ FD     A  +R   DP       D
Sbjct: 72  RPEAVVGAPRFAQAFRQLSPVLSRH---LIFQHSSFDSRCFAAAAERAYLDP-PEWTWSD 127

Query: 126 TLSIARRKHPSSR-----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ++++ARR  P  +     + L +L K  G+   H   H A  D+   ++V ++
Sbjct: 128 SVTLARRVWPELKGAGGGHGLGNLKKALGLQFRH---HDAGEDARAAAEVVLR 177


>gi|110597891|ref|ZP_01386173.1| Exonuclease [Chlorobium ferrooxidans DSM 13031]
 gi|110340468|gb|EAT58954.1| Exonuclease [Chlorobium ferrooxidans DSM 13031]
          Length = 189

 Score = 92.6 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 73/188 (38%), Gaps = 20/188 (10%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            + FD E+TGL         D     R++++  +          +    + P G    PE
Sbjct: 2   YLFFDTESTGLPRNWKAPVTDLGNWLRLVQLAYLSFDGVGNQTGSGNFIVRPEGFSIPPE 61

Query: 59  ALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-D 116
           A  +HGI T + L +      +  EF+    E+    +AHN  FD   + AE  R+   +
Sbjct: 62  AAAIHGISTAQALAEGLELKRVMEEFYAEV-ERAEWLVAHNMSFDEKILGAEFLRLGMPN 120

Query: 117 PLDPSRIIDTLSIA------RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            L   + I T+  +      +  + +    L+ L ++       +  H A +D  + +  
Sbjct: 121 ILLAKKKICTMQESVDFCAIKNSYGNKWPKLSELHQKL-FNCDFQESHNASVDVAVTAKC 179

Query: 171 YIKMMVGG 178
           + ++   G
Sbjct: 180 FWELKRLG 187


>gi|91070260|gb|ABE11179.1| putative DNA polymerase III, epsilon subunit [uncultured
           Prochlorococcus marinus clone HF10-11H7]
          Length = 259

 Score = 92.6 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 25/211 (11%)

Query: 2   IRKNKM--RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
             KNK   + ++ D ETTGLD   D +IEIG +      K   +   FL P    N+ EA
Sbjct: 29  TNKNKKIEKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFP---VNNNEA 85

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             ++GI+ E       +      F    +  +   +AHN +FD  +         + P  
Sbjct: 86  EYVNGISAEVTNISQPWEDGLHFFLKLVDSSD-FIVAHNVEFDKKWFGK-----GRLPKL 139

Query: 120 PSRIIDTLS---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK--- 173
             + I +L     + +K   +R  +  L   + I + +   H AL D   +S+V+ K   
Sbjct: 140 NKKWICSLEDINWSFQKSLKTRPSVTDLALSFSIPVWN--LHRALSDCFYISEVFKKCDN 197

Query: 174 ---MMVGGSQINFGFKTN---EDRFFKEEKK 198
              +++  ++  F +K     EDR   +   
Sbjct: 198 LEELLLKATEPRFLYKALVSYEDRSLAKNAG 228


>gi|262038648|ref|ZP_06012015.1| exonuclease RNase T and DNA polymerase III [Leptotrichia
           goodfellowii F0264]
 gi|261747318|gb|EEY34790.1| exonuclease RNase T and DNA polymerase III [Leptotrichia
           goodfellowii F0264]
          Length = 195

 Score = 92.6 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 72/183 (39%), Gaps = 20/183 (10%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVE------LLDYSKTNRTFQVFLCPNGRKNSPEA 59
           K   I FD+ET G       ++ I A++         + K +   + +    G   +  A
Sbjct: 2   KKNIIFFDVETNG--KMGSSVLSISAIKVSYDFEKNSWEKVSEYDRFYFRNEGEPINFGA 59

Query: 60  LKLHGITDEFLKDKP-------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           + ++G+TDE + +K        +F      F+ +  +    ++AHN KFD  FI   L+ 
Sbjct: 60  INVNGLTDEVIAEKRENADYPSTFKEDLDSFYLYCQDT-KHFVAHNIKFDRSFIPFPLK- 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                      ID +     ++ S +   L    K Y + +     H +L D  +   V+
Sbjct: 118 --NQFDTMMENIDIVRAGINEYGSYKWPKLMECAKFYNVPMDEEQLHESLYDVLITFRVF 175

Query: 172 IKM 174
            KM
Sbjct: 176 YKM 178


>gi|253583228|ref|ZP_04860426.1| exonuclease RNase T and DNA polymerase III [Fusobacterium varium
           ATCC 27725]
 gi|251833800|gb|EES62363.1| exonuclease RNase T and DNA polymerase III [Fusobacterium varium
           ATCC 27725]
          Length = 188

 Score = 92.6 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 23/188 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGI 65
           M+ +  D ET G+  K+  I   G V++    +    F  ++ P  G + + EALK+ G 
Sbjct: 1   MKILFIDTETGGITEKSALIQLSGIVQI--GKEVAEEFNFYVKPFPGSEVTDEALKIQGR 58

Query: 66  TDEFLKDKPSFSSIFSEFWDFF-------NEQNAEWI-AHNAKFDVGFINAELQRINKD- 116
           T E ++   S   +F +F           N+++   +  +N +FD+  IN  L+R  +  
Sbjct: 59  TREEIEKYDSEEVVFRKFMKILNKHIDKYNKEDKFLVGGYNVRFDIDVINKFLRRNGEKY 118

Query: 117 --------PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                    LDP + I  L + ++      N L + C  +GI +     H +L D     
Sbjct: 119 LFSYIQATTLDPLQWIAALQLLKKIPVLKDNKLETWCNHFGIEL---KAHDSLEDIKATK 175

Query: 169 DVYIKMMV 176
            +  KMM+
Sbjct: 176 ALTKKMML 183


>gi|284042646|ref|YP_003392986.1| exonuclease RNase T and DNA polymerase III [Conexibacter woesei DSM
           14684]
 gi|283946867|gb|ADB49611.1| Exonuclease RNase T and DNA polymerase III [Conexibacter woesei DSM
           14684]
          Length = 259

 Score = 92.6 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 90/243 (37%), Gaps = 31/243 (12%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI-T 66
           R   FDIETTG+D ++DRI+        D   T      +L   G +    A  +HGI T
Sbjct: 3   RLAAFDIETTGIDPQSDRIVTAAVSLAGDARPTVD--HDWLVDPGVEIPAGATAVHGITT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPL----- 118
           D    +  + +    E       Q   +   IA NA+FD+  ++ E +R    PL     
Sbjct: 61  DHARAEGRASAEAVEEITAVLAAQLLDHVPVIAFNARFDLTCLDREARRHGVVPLVDRVG 120

Query: 119 --DPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD----------- 163
             D   ++D   L     ++   +  L ++C+ Y + +   + H A  D           
Sbjct: 121 GPDGLIVVDPFVLDKQFDRYRRGKRTLGAVCEHYRVRLD--AAHTANADAIAAARVAWRL 178

Query: 164 SHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP---LFTRITKEE 220
           +  ++++    +         +   +    ++  +   N   ++RD P   L   +   E
Sbjct: 179 AQAIAELRQTELRALHGQQVLWAAEQAASLEQYFREQGNDEQVERDWPIVALPAPVAAGE 238

Query: 221 LDE 223
              
Sbjct: 239 PAA 241


>gi|24374384|ref|NP_718427.1| exonuclease [Shewanella oneidensis MR-1]
 gi|24348949|gb|AAN55871.1|AE015724_4 exonuclease [Shewanella oneidensis MR-1]
          Length = 181

 Score = 92.6 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 13/158 (8%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D+E TGLD   D+I+ IG V + + +      Q  L    R +  ++  +HGI D  L  
Sbjct: 2   DLEMTGLDPFKDQILSIGLVPIENGAIPLSHAQQKLV-QIRGSVGQSAIIHGILDNHLTQ 60

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
             S     + F +    +    +AH++  D  F+  ++  I    +     IDTL + ++
Sbjct: 61  AVSIEEAMAWFME--QTRGRVLVAHHSPLDCRFLQQDILTIYHQAVLL-PAIDTLVLEKQ 117

Query: 133 KHPSSRN-------DLNSLCKRYGITISHRSKHGALLD 163
           +     +        L +  +RYG+ I     H AL D
Sbjct: 118 RLLREHSVLKEGSLRLGACRERYGLPIYG--AHSALTD 153


>gi|114707008|ref|ZP_01439907.1| exodeoxyribonuclease X [Fulvimarina pelagi HTCC2506]
 gi|114537558|gb|EAU40683.1| exodeoxyribonuclease X [Fulvimarina pelagi HTCC2506]
          Length = 266

 Score = 92.6 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 69/175 (39%), Gaps = 30/175 (17%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF---QVFLCPNGRKNSPEALKLHGITD 67
           V D ET GL  + D +IEIG+V+L     T   F   Q F  P G   S  A ++H ITD
Sbjct: 25  VIDTETAGLRLEEDAVIEIGSVDL--DLVTGAIFNPMQTFCDPGGAVISDGARRVHQITD 82

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L   P FS     F          + A  A FD   +               R + T 
Sbjct: 83  EMLVGAPPFSDAVKPF------NTETYAAQRADFDRSRLR-----------LTGRWLCTH 125

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITIS-------HRSKHGALLDSHLLSDVYIKM 174
            +A R  P+ R + L SL K   + +S           H AL D+   + +  ++
Sbjct: 126 KLALRAFPNVRAHGLQSLVKYVPLDLSSVDQMLAGLHPHRALFDAVCTAVLLRRI 180


>gi|94984265|ref|YP_603629.1| exonuclease, RNase T and DNA polymerase III [Deinococcus
           geothermalis DSM 11300]
 gi|94554546|gb|ABF44460.1| exonuclease domain in DNA-polymerase alpha and epsilon chain,
           ribonuclease T [Deinococcus geothermalis DSM 11300]
          Length = 188

 Score = 92.6 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 64/180 (35%), Gaps = 17/180 (9%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI- 65
              I  D ET G D     ++ +G V L    +  R   + +     +   EA+ ++GI 
Sbjct: 12  QPIIFVDTETGGRDPARHPLLTVGLVTLTPQGEVTRPLHLRVRHEHYEVEEEAMAVNGID 71

Query: 66  --TDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSR 122
             T       P    +      +        +  HN  +D+GF+   L  +    +    
Sbjct: 72  LATHHATAQAP--EEVAEAVRAYARAVGRVMLGGHNLAYDLGFLRWLLPDLK--SIFRRG 127

Query: 123 IIDT------LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +DT      L  A          L+ L K +G+       H AL D+ + + VY +++ 
Sbjct: 128 RVDTKLTAQFLLHAGILPRKVGTPLDQLAKYFGLAY---QAHDALEDARVTAWVYAELLR 184


>gi|270160326|ref|ZP_06188980.1| exonuclease/polymerase-like protein [Legionella longbeachae D-4968]
 gi|308051563|ref|YP_003915137.1| putative exonuclease [Legionella longbeachae NSW150]
 gi|269987175|gb|EEZ93432.1| exonuclease/polymerase-like protein [Legionella longbeachae D-4968]
 gi|288859988|emb|CBJ13980.1| putative exonuclease [Legionella longbeachae NSW150]
          Length = 301

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 27/229 (11%)

Query: 1   MIRKNKMRK--------IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--L 48
           M  K +M +         + D+ET G+D+    IIEIG +     +          +  L
Sbjct: 23  MQLKERMYQPSSKVFMSTIIDLETMGMDATQHEIIEIGMLSFSFSNEDGILEIKHTYNEL 82

Query: 49  CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
              G+   PE  K+ GI +E +  K    +I   F     +++   I HNA+FD  F+  
Sbjct: 83  NDPGKPIPPEITKITGIRNEDVSGK----AINWTFVFQVLKESHLIICHNAQFDRNFLEL 138

Query: 109 ELQRINKDPLDPSRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           +     +  +       T+     ++     + L+ L  + G        H A+ D    
Sbjct: 139 QTPEEIQKQVTSLPFGCTIKDIDWKERDYESSKLDYLNWKLGYFYDG---HRAINDCWAT 195

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            ++ +       Q    F   + R  K +       +   +   L  R+
Sbjct: 196 LNLLL-------QEQGAFDELKSRVRKRQTLICAENAPFDKKDLLKNRL 237


>gi|32455548|ref|NP_862304.1| Ycg4D [Corynebacterium glutamicum]
 gi|9836715|gb|AAG00279.1|AF164956_11 Ycg4D [Corynebacterium glutamicum]
          Length = 296

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 15/168 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGL   + ++IEI   +          F   + P        A ++HGI+ +
Sbjct: 114 PLVLDTETTGL-GYDAQVIEIAIADASGKVL----FDTRIKPTVA-IEAAAQEVHGISPD 167

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDPSRIIDT 126
            L + PS+  + +      + +    I  NA FD   I         +            
Sbjct: 168 ALINAPSWPEVANRIEALLSGR--TVIIFNASFDSRLIAQTAGAFGLETGWWSTCTTRCA 225

Query: 127 LSIARRKH----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +A   +    P     L       G+  +  + H A  D+    ++
Sbjct: 226 MHLAASAYGSTNPYGSISLADATSAAGVPWTG-AAHSAAADTLATVEL 272


>gi|224096223|ref|XP_002310581.1| predicted protein [Populus trichocarpa]
 gi|222853484|gb|EEE91031.1| predicted protein [Populus trichocarpa]
          Length = 231

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 16/172 (9%)

Query: 9   KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK---L 62
            +VFD+ETT  +    R  ++E GA+ +         ++   + P  +  S  ALK    
Sbjct: 14  IVVFDLETTVPNRAGQRFRVLEFGAITVCPRKLVELDSYSTLIRP--KDLSAVALKSGRC 71

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
            GIT   + + P+F  +  + +   N +   W  HN  +FD   I      I K    P+
Sbjct: 72  DGITRGAVSNAPAFEEVADKIFSILNGR--IWAGHNIQRFDCVRIKEAFAEIGKPAPVPA 129

Query: 122 RIIDTL--SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +ID+L     R    +    + +L   +G+    + KH +L D  +  +V 
Sbjct: 130 GMIDSLGVLTERFGRRAGNMKMATLAAYFGL---GKQKHRSLDDVRMNLEVL 178


>gi|21220034|ref|NP_625813.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)]
 gi|256788866|ref|ZP_05527297.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289772754|ref|ZP_06532132.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|6822230|emb|CAB70936.1| putative DNA polymerase III [Streptomyces coelicolor A3(2)]
 gi|289702953|gb|EFD70382.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
          Length = 241

 Score = 92.2 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 13/164 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    +     FD ETTG+D++ DRI+    V         R  +  + P G      A 
Sbjct: 1   MTSWFEGPLAAFDTETTGVDTETDRIVSAALVVQDAPGLRPRVTRWLVNP-GVPVPESAT 59

Query: 61  KLHGITDEFL-KDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRIN-- 114
            +HG+T+E++ +     + +  E  +   EQ       +  NA FD+  ++ EL+R    
Sbjct: 60  AVHGLTEEYVQRHGRWPAPVMYEMAEALTEQARAGRPLVVMNAPFDLTLLDRELRRHRAS 119

Query: 115 --KDPLDPSRII----DTLSIARRKHPSSRNDLNSLCKRYGITI 152
                L+ + +       L     ++   R  L  LC  YG+ +
Sbjct: 120 SLGRWLERTPLHVLDPHVLDKHLDRYRKGRRTLTDLCAHYGVEL 163


>gi|304437027|ref|ZP_07396990.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369978|gb|EFM23640.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 180

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 68/174 (39%), Gaps = 16/174 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFD ETTG  S +D ++ +  V  +  +  +  +     P  +   P+A +++ I+ 
Sbjct: 4   KVLVFDTETTGFRS-DDEVLTLAVVNGVGETMVDGMY----APARKAEWPDAERINRISP 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +       +   E    FN  +   + +N +FD+  +            +P+R    L
Sbjct: 59  AMVAGCDPILAHREELERLFNAPDTLLVGYNTEFDIRLLAQS----GIRITNPNRHDVML 114

Query: 128 SI-ARRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  A RK P +R        L      Y     +   HGAL D+      Y KM
Sbjct: 115 AFSAFRKVPDARRGGYRWWKLTECADYYRYDWGNTVAHGALADTLATLFCYQKM 168


>gi|77164160|ref|YP_342685.1| exonuclease [Nitrosococcus oceani ATCC 19707]
 gi|254435603|ref|ZP_05049110.1| exonuclease superfamily [Nitrosococcus oceani AFC27]
 gi|76882474|gb|ABA57155.1| Exonuclease [Nitrosococcus oceani ATCC 19707]
 gi|207088714|gb|EDZ65986.1| exonuclease superfamily [Nitrosococcus oceani AFC27]
          Length = 205

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 16/174 (9%)

Query: 9   KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            IV D ETTGL  +N    I+ +G + ++   +   + +    P  R  S EA  +HGIT
Sbjct: 16  YIVLDTETTGLPDENGLPDIVTLG-ITVVSNREIAESVEFKTRPQKR-ISEEAQSIHGIT 73

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++      SF S + +  ++   Q    + HNA FD   +   + R      +   +  +
Sbjct: 74  NKQAAAFDSFDSQWQQISEYLKHQ--LIVIHNASFDWPILLDHVLRHGLAMPEIQGVFCS 131

Query: 127 ----LSIARRKHPSSRN---DLNSLCKRYGIT---ISHRSKHGALLDSHLLSDV 170
               +  A+       +    L++L K  G+    +     HGA +DS  L+ V
Sbjct: 132 QKAAIPWAQAMDLPCSHRGPSLDTLTKALGVEDLRVKEDGLHGAKIDSRQLAQV 185


>gi|93005267|ref|YP_579704.1| DNA polymerase III subunit epsilon [Psychrobacter cryohalolentis
           K5]
 gi|92392945|gb|ABE74220.1| Exonuclease [Psychrobacter cryohalolentis K5]
          Length = 203

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 67/172 (38%), Gaps = 10/172 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D E TGL+ K   ++ + A+ +      T     +   P       + + +HG+  
Sbjct: 35  WVAIDCEMTGLNPKKHHLLSVAAIHINGDKIDTGNGLHLLCRPPVMP-EGDTIVIHGLRT 93

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++   S+  +      F + +    +    + DVGF+N  ++      L P+ IID  
Sbjct: 94  ADVEHAMSYDEMLGLLLPFISNR--PLVGFCPQIDVGFLNPLVKHYMGTHL-PNEIIDIR 150

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRS-----KHGALLDSHLLSDVYIKM 174
            +  R+       L+S  +     ++H +      H A  D+ + +  ++ M
Sbjct: 151 PLYSRRMMGRSQGLSSQAQHLNSILAHYNIPELGTHDAYNDAIMTAMAFLHM 202


>gi|300781383|ref|ZP_07091237.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC
           33030]
 gi|300533090|gb|EFK54151.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC
           33030]
          Length = 233

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N  R + FD+ETT  + +  RI+    V  +D S    T +    P G     +A ++HG
Sbjct: 13  NASRMLSFDLETTSANPREARIVTSALVR-IDGSSMTAT-ETLADP-GVDIPEQAARIHG 69

Query: 65  ITDE-FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           IT E    +      +  E         ++    +  NA +D+  + A    +  D    
Sbjct: 70  ITTEKARAEGRPHDDVLQETVAAIKQAWDEGLTLVVFNAPYDLSVLRA----LTGDFTVT 125

Query: 121 SRIIDTLSIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             + D L I R   R     + +L +L + YG+ + +   H A  D+   + +
Sbjct: 126 GPVFDPLLIDRAMDRYRKGGKRNLGALSEFYGVRLDN--AHEATSDATAAARI 176


>gi|152992669|ref|YP_001358390.1| exonuclease [Sulfurovum sp. NBC37-1]
 gi|151424530|dbj|BAF72033.1| exonuclease [Sulfurovum sp. NBC37-1]
          Length = 244

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 27/174 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++FD ETTG + + DRII+IGA+ +    +    F    C      S EA+++H IT 
Sbjct: 3   KYVLFDTETTG-NQEADRIIQIGAMIVHSKDEI-EVFDEL-CSTQVPISIEAMEVHNITP 59

Query: 68  EFLKDKPSFSS-IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           + +  KP++S   F++     N      IAHN  FD+G +  E        ++   +IDT
Sbjct: 60  DVIAGKPTYSETAFAKRVQELNTTENYLIAHNISFDLGMLEKE------GFVNHYTLIDT 113

Query: 127 LSIARRKHPSSR-NDLNSL-------------CKRYGITISHRSKHGALLDSHL 166
           +   +   P S  + L  L              ++ GITI     H A+ D  +
Sbjct: 114 VRCTKHLLPDSPYHRLQYLRYSLGLYKTEAQEAQKLGITI---KAHDAIGDVLV 164


>gi|302346280|ref|YP_003814578.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
 gi|302150309|gb|ADK96570.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
          Length = 896

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 65/183 (35%), Gaps = 36/183 (19%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N+   +VFD ETTGL+   D IIEI A+ +           +++  +             
Sbjct: 510 NEEEIVVFDTETTGLNVFQDDIIEIAAIRIKGGEVVGEPLDLYIETDKPILP-------- 561

Query: 65  ITDEFLKDKP-----------------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
                L DK                  S S     F  +     +  + HNA +D   ++
Sbjct: 562 ----MLGDKENPMYAIYHEKMSTGELLSPSDALRRFLAYVGT--SPILGHNANYDYNILD 615

Query: 108 AELQRINKDPL--DPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164
             LQR   D +     R  D+L + R   PS     L SL + +   ++  + H A+ D 
Sbjct: 616 NNLQRYCNDTMQAHDIRCFDSLKLIRLLAPSLHSYKLESLLETF--QLAGVNSHQAIDDV 673

Query: 165 HLL 167
              
Sbjct: 674 KAT 676


>gi|256637237|dbj|BAI03206.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640289|dbj|BAI06251.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643346|dbj|BAI09301.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646401|dbj|BAI12349.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649454|dbj|BAI15395.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256655498|dbj|BAI21425.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 337

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 16/177 (9%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPE 58
           K K + +  D+ETTGL S +D+I+ I  +     +  +  K       ++    +K+ P 
Sbjct: 122 KGKNKPLFVDVETTGLHS-DDQIVSICMILLYADKSQELQKLTYKSLYYIFDPCKKSHPI 180

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A  +HG  D  L+ +  F         F  E +   +AHN  FD+ FI         D +
Sbjct: 181 AEGIHGYNDWTLRHQNLFEEKMEHILSFIEESD-VIVAHNVNFDMKFIRNSFANAKID-I 238

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                + T+      H      L++  KR GI     S H A  D  +   +Y++ M
Sbjct: 239 GKIGTMCTME----MHGG---SLSACSKRLGIQ-RKTSIHDAAEDVLMCMCLYLEKM 287


>gi|258543099|ref|YP_003188532.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634177|dbj|BAI00153.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256652440|dbj|BAI18374.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-01-42C]
          Length = 343

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 16/177 (9%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPE 58
           K K + +  D+ETTGL S +D+I+ I  +     +  +  K       ++    +K+ P 
Sbjct: 128 KGKNKPLFVDVETTGLHS-DDQIVSICMILLYADKSQELQKLTYKSLYYIFDPCKKSHPI 186

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A  +HG  D  L+ +  F         F  E +   +AHN  FD+ FI         D +
Sbjct: 187 AEGIHGYNDWTLRHQNLFEEKMEHILSFIEESD-VIVAHNVNFDMKFIRNSFANAKID-I 244

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                + T+      H      L++  KR GI     S H A  D  +   +Y++ M
Sbjct: 245 GKIGTMCTME----MHGG---SLSACSKRLGIQ-RKTSIHDAAEDVLMCMCLYLEKM 293


>gi|229014710|ref|ZP_04171818.1| exonuclease [Bacillus mycoides DSM 2048]
 gi|228746575|gb|EEL96470.1| exonuclease [Bacillus mycoides DSM 2048]
          Length = 181

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 17/171 (9%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N  + ++ D ETTGL  + D+II+I  + L      N      + P       EA  +HG
Sbjct: 21  NIDQFVILDTETTGLTLR-DQIIDISVINLSGKILLN----SLVKPTI-NIPAEAASIHG 74

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E +   PS+++I+ E  +         + +NA+FD+G I       N    +  +  
Sbjct: 75  ITNEMVHGAPSWTAIYKELREV--TVGKTLLIYNAEFDLGMIENTCI-ANNVEFNNFKST 131

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + +      S R   L+   +   +TI    KH A  D     ++  ++
Sbjct: 132 CVMKMYADYVDSKRWISLSDATE---LTI----KHRAAADCFAALELLQQL 175


>gi|333030485|ref|ZP_08458546.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
 gi|332741082|gb|EGJ71564.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
          Length = 164

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET   ++    I  +G V + +    +R F   + P     +    ++HG+TD 
Sbjct: 4   FVAIDFETA--NANRSSICSVGIVIVKNGEVVDR-FYQLIRPIPNFYTYWNTRVHGLTDY 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                P F  ++S        Q    +AHN+ FD   +    +              TL 
Sbjct: 61  DTAMAPRFPEVWSSIAP--KLQGLPLVAHNSAFDESCLKKAFEAYQL-IYPNYIFYCTLK 117

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRS 156
            +R+  P    + L ++    G ++ +  
Sbjct: 118 ASRKSLPRLINHQLGTVASCCGYSLQNHH 146


>gi|332662172|ref|YP_004444960.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332330986|gb|AEE48087.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 194

 Score = 92.2 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 70/194 (36%), Gaps = 27/194 (13%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            +  D ETTGL               R++++  +   +           + P G      
Sbjct: 2   ILFLDTETTGLPLNWSAPISRVNNWPRMVQLAGLLYDEEGTLLEQLNYLVRPEGYTIPAA 61

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKD 116
            +++HGIT E  L +    + + ++F     E++   +AHN  FD   + AE  R   +D
Sbjct: 62  VVRIHGITTERALAEGVPVAQVLNDFRSIL-EKSKLLVAHNVNFDHAIVGAEYHRYVKED 120

Query: 117 PLDPSRIIDTLSIARRKH--------PSSRN---DLNSLCKRYGITISH-RSKHGALLDS 164
           PL P     T++     +        P        L  L   Y +     +  H A++D 
Sbjct: 121 PLLPIPKFCTMTSPEVIYHCALPANSPRGGYKWPKLEEL--HYKLFKEGIKGAHDAMVDI 178

Query: 165 HLLSDVYIKMMVGG 178
              +  Y ++   G
Sbjct: 179 TATARCYWELKRLG 192


>gi|332188896|ref|ZP_08390601.1| exonuclease family protein [Sphingomonas sp. S17]
 gi|332011078|gb|EGI53178.1| exonuclease family protein [Sphingomonas sp. S17]
          Length = 253

 Score = 91.8 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 60/184 (32%), Gaps = 29/184 (15%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKN 55
           M R       V D+ETTG       + EIG       +   +        + + P GR  
Sbjct: 1   MQRPQPQIIRVIDLETTGQAPPTHGVCEIGWQDVALGKNGRWELEGEGGSLLVNP-GRPI 59

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            P    +H I DE + D P +  +     D    +     AH A F+  F    +     
Sbjct: 60  PPITQAIHHILDEQVADAPWWHDVARRVLD-PWPRRLALAAHRADFEQQFCTPAM----- 113

Query: 116 DPLDPSRIIDTLSIARRKHPSSRN----DL------NSLCKRYGITISHRSKHGALLDSH 165
                +  I T   A R  P S +     L        L    G+ I     H A  D++
Sbjct: 114 --TQSADWICTWKCALRLWPDSPSFSNQVLRYWRKPEGLVHERGLPI-----HRAFPDAY 166

Query: 166 LLSD 169
           + + 
Sbjct: 167 VTAH 170


>gi|256027838|ref|ZP_05441672.1| exonuclease, RNase T and DNA polymerase III [Fusobacterium sp. D11]
 gi|289765790|ref|ZP_06525168.1| exonuclease [Fusobacterium sp. D11]
 gi|289717345|gb|EFD81357.1| exonuclease [Fusobacterium sp. D11]
          Length = 191

 Score = 91.8 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 80/188 (42%), Gaps = 24/188 (12%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
           + I  D ET G++ +   +I++  +  +D  K    F  ++ P    + + +AL++ G T
Sbjct: 3   KIIFIDTETGGVNPEKSALIQLSGIIRID-KKDVEKFNFYIKPFENSEVNEKALEVQGRT 61

Query: 67  DEFLKDKPSFS--SIFSEFWDFF-------NEQNAEWIA-HNAKFDVGFINAELQRINKD 116
            + LK +       ++ +F +         ++ +   +A +N +FDV  + A  QR   +
Sbjct: 62  LDELKAEKYIEEKEVYKQFINLLDKYIDKYDKTDKFIVAGYNVRFDVDILKALFQRHGNN 121

Query: 117 PLD---PSRIIDTLSIARRKHPSS------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            L     S ++D L   R    +        N L + CK +GI +     H +L D    
Sbjct: 122 FLFSYLDSSMLDPLYSIRLLQIAGILPVLENNKLETWCKHFGIEL---KAHDSLEDIVAT 178

Query: 168 SDVYIKMM 175
             +  K++
Sbjct: 179 KKLIGKLI 186


>gi|268679559|ref|YP_003303990.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617590|gb|ACZ11955.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 246

 Score = 91.8 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 29/175 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I+FD ETTG +++ DRII+IGA+ ++D       F    C        EA+ +HGIT 
Sbjct: 3   KYILFDTETTG-NNEEDRIIQIGAM-IVDAKGQVEVFDEL-CSTVLPIKVEAMAVHGITP 59

Query: 68  EFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             ++ K  F+    +       N++N   IAHN  FD+G +  E        +   +IID
Sbjct: 60  NLIEGKGLFTDTNFYKTLLSLNNQEN-YLIAHNMPFDMGMLQKE------GFIPDLKIID 112

Query: 126 TLSIARRKHPSSRND-LNSL-------------CKRYGITISHRSKHGALLDSHL 166
           TL +A+   P+S +  L  L               +Y ITI     H A+ D  +
Sbjct: 113 TLRVAKHLIPNSPSKALQYLRYDLELYKNEQAEADKYNITI---KAHDAIGDVLV 164


>gi|262275580|ref|ZP_06053389.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
 gi|262219388|gb|EEY70704.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
          Length = 239

 Score = 91.8 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 9/169 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ET+GLD + D+++ +G VE+        + +  L      N  E+ ++H +  E 
Sbjct: 54  LVLDFETSGLDPEQDKVLSMGWVEIRQSQIRLSSARHILVNQPVLNGYESARIHHLRPET 113

Query: 70  LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L++   S    FS+ +D    +    +AH +  +  F+   L         P   +DTL 
Sbjct: 114 LRNCGVSEHHAFSQLFDVM--KGKVIVAHGSVIEKRFLARYLTLHYGQINLPLVWLDTLK 171

Query: 129 IARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           I + +    +      L+S+   +G+       H AL D+   +++Y+ 
Sbjct: 172 IEQYREQLRQVCRDWRLSSVRAAHGLP--DYQAHNALNDAIATAELYLA 218


>gi|42523607|ref|NP_968987.1| DNA polymerase III subunit epsilon [Bdellovibrio bacteriovorus
           HD100]
 gi|39575813|emb|CAE79980.1| DNA polymerase III polC-type [Bdellovibrio bacteriovorus HD100]
          Length = 295

 Score = 91.8 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 68/169 (40%), Gaps = 20/169 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA---VELLDYSKT---NRTFQVFLCPNGRKNSPEALKLH 63
            + D+ETTGL+   D IIEIG    +   +  +     +++  F  P G+  SPE   L 
Sbjct: 47  AILDVETTGLNQTEDTIIEIGIRQFLFNKNSGEVLAVTKSYSSFQDP-GKPISPEIQALT 105

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GITDE +  K     I     D    +    IAHNAKFD  FI+   +R    P      
Sbjct: 106 GITDEMVAGK----QIDWTAVDALLNECQLIIAHNAKFDRPFID---RRSKTSPERVWAC 158

Query: 124 -IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               +  + +   S +  L  L   +G        H A+ D   L  + 
Sbjct: 159 SFKQVEWSDKGFTSPK--LELLNIYHGFFTD---SHRAINDVDALLYLL 202


>gi|224083745|ref|XP_002307108.1| predicted protein [Populus trichocarpa]
 gi|222856557|gb|EEE94104.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score = 91.8 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 16/172 (9%)

Query: 9   KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK---L 62
            + FD+ETT  +    R  ++E GA+ +         ++   + P     S  ALK    
Sbjct: 12  IVFFDLETTVPNKAGQRFWVLEFGAIIVCPRKLVELDSYSTLIRPE--DLSAVALKSGRC 69

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
            GIT E + + P+F  +  + +   N +   W  HN  +FD   I      I +    P 
Sbjct: 70  DGITREAVANAPAFEEVADKIFTILNGR--IWAGHNIQRFDCVRIKEAFAEIGRPAPMPV 127

Query: 122 RIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            + D+L +   K    +    + +L   +G+    + KH +L D  +  +V 
Sbjct: 128 GMFDSLGVLTEKFGRRAGNMKMATLATYFGL---GQQKHRSLEDVRMNLEVL 176


>gi|83816222|ref|YP_444853.1| exonuclease, putative [Salinibacter ruber DSM 13855]
 gi|83757616|gb|ABC45729.1| exonuclease, putative [Salinibacter ruber DSM 13855]
          Length = 236

 Score = 91.8 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 55/168 (32%), Gaps = 13/168 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTG   + D +IE+G V               + P     +  A ++HGITDE 
Sbjct: 67  VFLDTETTGSGPQ-DAVIELGVVAAQGEVLI----HTLVAP-LAPVTRGARRVHGITDEE 120

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P F ++         +    W      +D   +                   T   
Sbjct: 121 LADAPPFPTVADRLDTVLADAECVWT-FGPTYDRRMLLQTAALAECPETHRRIQDSTWRD 179

Query: 130 -----ARRKHPSSRNDLNSLCKRYGITISHR-SKHGALLDSHLLSDVY 171
                 R    + R  L    KR  ++I      H AL D+ L   V+
Sbjct: 180 LQPDATRVLGDAERVALTDAAKRLDVSIPTEGHHHRALYDAKLARRVW 227


>gi|269986750|gb|EEZ93030.1| Exonuclease RNase T and DNA polymerase III [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 199

 Score = 91.8 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 87/187 (46%), Gaps = 17/187 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV DIET+G    N  I+ IGAV+  +  +  + +Q       ++ + EAL ++G   E 
Sbjct: 2   IVVDIETSGTSPYNHSILSIGAVDFSNPER--QFYQECQIEKDKEYTEEALNVNGFKKEE 59

Query: 70  LKD--KPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           L D  K +  S+ +EF  +    ++     HN  FD  F+N   ++ N +     R+IDT
Sbjct: 60  LTDPKKKTLESVLNEFIVWIQPVKDKTIGGHNVNFDANFLNYSFKKYNINFSFGHRVIDT 119

Query: 127 LS------IARRKHPSSRNDL-----NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            S      ++R   P ++N+      + +    G+    +  H AL  + + ++   +++
Sbjct: 120 HSLVYASLLSRHIDPPTKNEKTDINSDYVFNYAGLPPEPK-PHNALNGAKMEAEALSRLI 178

Query: 176 VGGSQIN 182
           +G   ++
Sbjct: 179 LGRKLLD 185


>gi|54310468|ref|YP_131488.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9]
 gi|46914911|emb|CAG21686.1| putative DNA polymerase III, epsilon subunit [Photobacterium
           profundum SS9]
          Length = 207

 Score = 91.8 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 69/181 (38%), Gaps = 11/181 (6%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALK 61
           R      +  D ETT LD  +  ++ I A  + +    T+++  + L          ++ 
Sbjct: 24  RYQGDELVSVDCETTSLDPHSAELVTIAATVIKNNRILTSKSIHLTLR-APISLDANSIT 82

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H I  + L+         +   +F   +    + ++ ++D   ++   +R+    L   
Sbjct: 83  IHRIRHQDLRAGLGEKEALTTLLNFIGNR--PLVGYHIRYDKTILDRYYRRLFGFALPNK 140

Query: 122 RIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +  +     R      N      L ++ +  G+ +  R  H AL D+   + +Y+++  
Sbjct: 141 LVEVSHLYHDRLERLLPNAYYDLSLEAISRHLGLPVPER--HDALEDTITAALIYVRLKH 198

Query: 177 G 177
           G
Sbjct: 199 G 199


>gi|120597914|ref|YP_962488.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp.
           W3-18-1]
 gi|120558007|gb|ABM23934.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp.
           W3-18-1]
          Length = 301

 Score = 91.8 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 20/177 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPE 58
           ++   ++ D ETTGL + ++ IIE+G V++                 ++  P G+     
Sbjct: 48  DERPMVLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDP-GKPIPEL 106

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DP 117
             +L GITD+ ++ +     I       +   +   +AHNA+FD  F       +     
Sbjct: 107 ITELTGITDDMVQGQ----HIDDSLVASWLSDDPLVVAHNAQFDRPFFEKRFAALGHLSW 162

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +  ID      +        L  L  R G        H A  D   ++ ++  +
Sbjct: 163 ACSASGID-----WKALGFESRKLEYLLLRLGWFYEG---HRAATDCFAMAWLFHLL 211


>gi|237746008|ref|ZP_04576488.1| exonuclease [Oxalobacter formigenes HOxBLS]
 gi|229377359|gb|EEO27450.1| exonuclease [Oxalobacter formigenes HOxBLS]
          Length = 305

 Score = 91.8 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 83/248 (33%), Gaps = 29/248 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVE------LLDYSKTNRTFQVFLCPNGRKNSPE 58
           +++  +  D ETTGL S+ D IIE+G V              +     +  P G+  SP 
Sbjct: 52  DEIPIVFLDTETTGLSSETDVIIELGLVRASFSPSKKKLVSLDAILSAYEDP-GKPLSPF 110

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             +L GITDE ++ +       + F +      A  +AHNA FD  F     +       
Sbjct: 111 ITELTGITDEKVRGQRIDEKTVAGFLE----NAALIVAHNAAFDRPFFEKRFKG-----F 161

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           D  +   +L+         +N                  H A LD   L+ ++       
Sbjct: 162 DDRKWACSLAGINWNSLGFKNLKLEELLLKSGYFY--EAHRASLDCLALAWLFHVQNRAF 219

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKR-----------DKPLFTRITKEELDEHDKT 227
           + + +  +                 SL  R           ++  +  I +EEL      
Sbjct: 220 ADLLYQAEKKTVTVRAFGAPFEVRDSLKTRGYRWHDGTTGPNRHWWKEIPEEELAAEKNF 279

Query: 228 IQTLGKNA 235
           +  L  +A
Sbjct: 280 LDELYPHA 287


>gi|330991910|ref|ZP_08315859.1| DNA polymerase III polC-type [Gluconacetobacter sp. SXCC-1]
 gi|329760931|gb|EGG77426.1| DNA polymerase III polC-type [Gluconacetobacter sp. SXCC-1]
          Length = 309

 Score = 91.8 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 51/162 (31%), Gaps = 19/162 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL---DYSKTN--RTFQVFLCPNGRKNSPEALKLHGI 65
             D+ETTGL +  D IIE G V  +   +         F     P+     P+   L GI
Sbjct: 57  FLDLETTGLSAAKDEIIEFGIVPFVYTLEGKILGTLEPFSRLREPSC-PIPPQITALTGI 115

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T + +  +        E   F     +  IAHNA FD  F  A                 
Sbjct: 116 TPDMVAGQ---RVTADEVAGFVAPA-SLIIAHNANFDRKFAEAFS-----PVFTTKPWAC 166

Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHL 166
           ++              L+ L  + G        H A+ D   
Sbjct: 167 SMRDVDWAAEGYEGRKLSYLGMQAGFWFDG---HRAVDDCQA 205


>gi|220926351|ref|YP_002501653.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
 gi|219950958|gb|ACL61350.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
          Length = 296

 Score = 91.8 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 78/236 (33%), Gaps = 29/236 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGLD   D +IE+G +        + +R    F  L    R    E  +L GI
Sbjct: 42  LILDTETTGLDPAADEVIELGIIAFTYGPSGRIHRVRHRFNQLQQPARPIPEEVTRLTGI 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRII 124
           TD  +  +     I     +    +    IAHNA+FD     A        +       I
Sbjct: 102 TDADVAGR----RIDDRAVEALAARARVVIAHNARFDRRMCEARWPVFAGLNWACSCHQI 157

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK----------- 173
                  R+       L  L   +G      + H A+ D   L  +  +           
Sbjct: 158 -----PWREEGHEAARLGGLLADHG---YFHNGHRAIDDCEALLWLLARPLKRSGRLALA 209

Query: 174 -MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
            +M    +       ++  F  +++    N     R +  +  + + +L+     +
Sbjct: 210 TLMEAARRPTVRLWASDAPFALKDRLKDRNYRWSSRRRCWYIDLDEAQLEIERSFL 265


>gi|154504776|ref|ZP_02041514.1| hypothetical protein RUMGNA_02285 [Ruminococcus gnavus ATCC 29149]
 gi|153794950|gb|EDN77370.1| hypothetical protein RUMGNA_02285 [Ruminococcus gnavus ATCC 29149]
          Length = 300

 Score = 91.8 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 12/172 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV+D+ETTG++   D  + +  ++L         F+ +  P   K+ P+A  +HGIT E 
Sbjct: 135 IVYDLETTGVNPWKDEPLSMCIMDLQGKVI----FEHYFRPEHTKSWPDAAAIHGITPEK 190

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRI-NKDPLDPSRIIDTL 127
           + ++   S    +    F+  +   I +N   FD  F+ A   ++      D  R    L
Sbjct: 191 VANESPMSFYRDQIQKIFDASD-ILITYNGINFDDSFLEAAGIKLPEVMQFDVMREYAWL 249

Query: 128 SIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                ++        L      YG   S    H A  D       Y KM+ G
Sbjct: 250 IHDWDEYHQGWRWWRLIDCAAYYGYEFS---AHDAAEDVKATLYCYKKMVFG 298


>gi|90413373|ref|ZP_01221366.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
 gi|90325615|gb|EAS42084.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
          Length = 207

 Score = 91.4 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 68/182 (37%), Gaps = 13/182 (7%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQ-VFLCPNGRKNSPEAL 60
           R      +  D ETT LD  +  ++ I A  + D    T+++       P+       ++
Sbjct: 24  RYKGDELVSVDCETTSLDPHSAELVTIAATVIKDNRILTSKSIHLTLRAPS--SLDANSI 81

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +H I  + L+         +   DF   +    + ++ ++D   ++   +R+    L  
Sbjct: 82  AIHRIRHQDLRAGLDEKEALTTLLDFIGNR--PLVGYHIRYDKTILDRYYRRLFGFALPN 139

Query: 121 SRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +  +     R      N      L ++ +   + +  R  H AL D+   + +Y+++ 
Sbjct: 140 KLVEVSHLYHDRLERLLPNAYYDLSLEAISRHLDLPVPER--HDALEDTITAALIYVRLK 197

Query: 176 VG 177
            G
Sbjct: 198 HG 199


>gi|331685967|ref|ZP_08386544.1| exonuclease superfamily [Escherichia coli H299]
 gi|331076920|gb|EGI48141.1| exonuclease superfamily [Escherichia coli H299]
          Length = 282

 Score = 91.4 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 15/168 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD      +EIG  +          F+  L P       +A  +HGI+++
Sbjct: 104 PLFLDTETTGLD-NTAEALEIGLTDAAGQVV----FETRLKPTVA-IGAQAAAVHGISEQ 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            L   PS++ +  +      ++    I  N++FD+  +       +   D L+   +   
Sbjct: 158 ALCGAPSWTDVARQLRHAIGDR--PVIIFNSRFDIRILKQTAAAHSDPADWLEEMTVYCA 215

Query: 127 LSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +A   + ++       L S   + G+T      H A+ D+ + + V
Sbjct: 216 MELAAGYYGATNRYGTISLASAASQAGLTWEG-QAHSAIADARMAAGV 262


>gi|222149472|ref|YP_002550429.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4]
 gi|221736455|gb|ACM37418.1| polymerase epsilon subunit [Agrobacterium vitis S4]
          Length = 326

 Score = 91.4 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 66/174 (37%), Gaps = 19/174 (10%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALK 61
            ++ I+ D ETTGL+ + D IIEIG +              +V+  L         +   
Sbjct: 70  PLKGIILDTETTGLNWRKDEIIEIGLIAFTFDSNGNIGDVTEVYGGLQQPSMSIPADITT 129

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRI-NKDPLD 119
           L GITDE +  +     +     +      A+ + AHNA FD  F          K    
Sbjct: 130 LTGITDEVVAGQSIDMEVVQALIE-----PADLVIAHNAGFDRPFCEMLSPMFAGKAWAC 184

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +  ID    + R +  ++  L  L  + G    H   H A+ D   L +V  +
Sbjct: 185 SNAEID---WSSRGYEGTK--LGYLIGQAG--FFHEG-HRAVDDCFALLEVLAR 230


>gi|322805639|emb|CBZ03204.1| ATP-dependent DNA helicase UvrD/PcrA,clostridial paralog
           [Clostridium botulinum H04402 065]
          Length = 322

 Score = 91.4 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 6/126 (4%)

Query: 52  GRKNSPEALKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
            +K+  ++  +HG +D+FLK+   +   +  +F +F   ++   + HN  FD   +N+EL
Sbjct: 3   PKKSVGDSYLVHGFSDQFLKENGENKKVVLKDFLEFI--KDTVIVGHNVTFDTSILNSEL 60

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           +R++ +        DTL IARR +PS + + L +L K +      +S H A+ D     D
Sbjct: 61  ERLSLEKASFKTYYDTLDIARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKD 118

Query: 170 VYIKMM 175
           V + M+
Sbjct: 119 VLMAML 124


>gi|56707099|ref|YP_170696.1| putative exonuclease [Streptomyces albulus]
 gi|56675918|dbj|BAD80780.1| putative exonuclease [Streptomyces albulus]
          Length = 288

 Score = 91.4 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 25/177 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDE 68
           ++ D ETT LD +   IIEI  ++         T    + P  G +  P+A  +H +T E
Sbjct: 131 VLLDTETTALDGQ---IIEIAILDAATGRPLLDT---LVKPTEGVEIDPQAHAVHRLTLE 184

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRIID 125
            L D P +  +  +       ++   +A++A FD G I    +++ K P+    P     
Sbjct: 185 DLADAPPWEKVLPKVRKL--TKDRTILAYHAAFDRGRIIDHTEQVGKRPMHLADPDNWWC 242

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +    + +   R  LN               H A+ D     ++  K+  G  +++
Sbjct: 243 LMQARSQFYGHGRRSLN-------------GPHRAMGDCRKERELLKKISEGHGRLH 286


>gi|300741873|ref|ZP_07071894.1| putative DNA polymerase III epsilon subunit [Rothia dentocariosa
           M567]
 gi|300381058|gb|EFJ77620.1| putative DNA polymerase III epsilon subunit [Rothia dentocariosa
           M567]
          Length = 230

 Score = 91.4 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 73/208 (35%), Gaps = 11/208 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D    RI+    + L       R  +    P G +    A  +HGIT E+ +
Sbjct: 11  FDLETTGVDVTTARIVTASLLLLNPDGSVQRAGEWLANP-GIEIPEGAASVHGITTEYAR 69

Query: 72  -DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIID 125
                   +  E               IA NA +D   ++ E+ R N     L    I+D
Sbjct: 70  SHGQPAQQVIWEVAGAIGSLFLDGIPVIAFNAAYDFSVLHHEMLRYNIAHGELPAGHILD 129

Query: 126 TLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
              I +   P  R    L +L   +G+ + +   H +  D+     + +K+     ++  
Sbjct: 130 PYVIHKHVIPRKRGNRKLETLTAEHGVVLEN--AHTSKADALAAERLLVKLAERFPEVAT 187

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                     +       +     R KP
Sbjct: 188 DAAALHTHQVQWSLDQARDFQDWLRTKP 215


>gi|92113002|ref|YP_572930.1| DNA polymerase III subunit epsilon [Chromohalobacter salexigens DSM
           3043]
 gi|91796092|gb|ABE58231.1| Exonuclease [Chromohalobacter salexigens DSM 3043]
          Length = 205

 Score = 91.4 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 70/175 (40%), Gaps = 9/175 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ETT LD +   ++ I AV++ D                   S +++++HG+    
Sbjct: 32  IALDCETTDLDPRQADLVAIAAVKVRDGRVLTSESLDLRLQRPDSLSSDSIRIHGLRGVD 91

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTL- 127
           L    +     +   DF   +    +     +DV  IN  L+ R   D  + +  +  L 
Sbjct: 92  LLGGEALGDALNTLLDFIGNR--PLVGWCIDYDVAVINRHLRPRTGFDLPNRTIDVCRLY 149

Query: 128 -SIARRKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               RR  P    DL   ++ +  G+ +  R  H AL D+   + +Y+++  G +
Sbjct: 150 ARERRRAQPDVEPDLRFEAMSEALGVPVMGR--HTALGDAVTTALMYLRLCRGQA 202


>gi|310831493|ref|YP_003970136.1| putative helicase/exonuclease [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386677|gb|ADO67537.1| putative helicase/exonuclease [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 870

 Score = 91.4 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 66/180 (36%), Gaps = 23/180 (12%)

Query: 11  VFDIETTGL------DS------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           + D ETTGL      +        N R+IE+G +         + +   +  N + N+  
Sbjct: 691 ILDTETTGLPKQRPFNPNNTSAYDNARMIELGYIIYNTKGDIIKKYNNLINHNIKINNSF 750

Query: 59  ALKLHGITDEFLKDKPSF-SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--- 114
              +HGIT +    K      +   F+    E +   + HN  FD   +  E+ RI    
Sbjct: 751 ---IHGITSDICSKKGLIIDDVLDTFYQDLKECD-VLVCHNVDFDKNILLNEIYRIKKME 806

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             + L+    I TL   +  +   R  L+   K+     +    H AL D  +    + K
Sbjct: 807 LYEHLNNKSTICTLKKTKELY-GKRTKLSDWYKK-NFNDNTIQNHRALDDVIMTGKCFFK 864


>gi|257468536|ref|ZP_05632630.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium ulcerans
           ATCC 49185]
 gi|317062795|ref|ZP_07927280.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
 gi|313688471|gb|EFS25306.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
          Length = 190

 Score = 91.4 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 79/188 (42%), Gaps = 24/188 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKLHGI 65
           M+ +  D ET GL+ K   +I++  +  +D  K    F  F+ P    + + +AL++ G 
Sbjct: 1   MKILFIDTETGGLNPKESALIQLSGIVRID-KKDVEEFNFFIKPFAESEVNAKALEVQGR 59

Query: 66  TDEFLKDKP---------SFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQRINK 115
           T++ L+ +           F  I   + D +++ +   +A +N KFD+  + +  +R   
Sbjct: 60  TEKELETEKYRPEKEVYTDFKKILDRYIDKYDKTDKFIVAGYNVKFDIDMLQSFFKRNGD 119

Query: 116 DP---------LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           +          LDP   I  L +         N L + C+ +GI       H +L D   
Sbjct: 120 NFLFSYISSSVLDPLPCIGMLQLCEVLPELKNNKLETWCEYFGIGF---KAHDSLEDIKA 176

Query: 167 LSDVYIKM 174
             ++  K+
Sbjct: 177 TKELIFKI 184


>gi|126668711|ref|ZP_01739661.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
 gi|126626811|gb|EAZ97458.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
          Length = 294

 Score = 91.4 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 79/237 (33%), Gaps = 29/237 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + D+ETTGL + ND+IIE+G V++         ++       +  P G        ++ G
Sbjct: 51  ILDLETTGLSAANDKIIELGLVKVRVSPSTGQLTEIVSMLDQYEDP-GIPIPAVITEITG 109

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRI 123
           ITD+ +  +                      AHN+ FD GF    L Q   +      + 
Sbjct: 110 ITDDMVAGR-RLDEGA--LAQALAGDGIIL-AHNSSFDRGFFEKRLPQHAGRRWACSFQG 165

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI-------KMMV 176
           +     + R      + L  L  + G   +    H A +D   ++ +         ++++
Sbjct: 166 V-----SWRALGFESSKLEYLLLKSGYFYTG---HRAEVDCLAVAWLMHCCPEATKQIVL 217

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE--LDEHDKTIQTL 231
                 +  K     F  ++  +               R   EE  L E    +  L
Sbjct: 218 SEQAKQYAIKAVGAPFDVKDSLSGRGYRWNPDKYGKVWRTVIEEANLPEEKAFLAAL 274


>gi|212639167|ref|YP_002315687.1| hypothetical protein Aflv_1334 [Anoxybacillus flavithermus WK1]
 gi|212560647|gb|ACJ33702.1| 3'-5' exonuclease related protein [Anoxybacillus flavithermus WK1]
          Length = 240

 Score = 91.4 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 8/183 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
              + +  I+ D ETTG    + D I  + A++  +    +     F     R+     +
Sbjct: 51  TPLSDVTFILLDTETTGFSPQRGDEIFSLAALKTKNGEPLDLYCSNFR--PKRRIPEHVV 108

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L GIT++ +   P           F N   +  + ++ + DV F+N  L R N   +  
Sbjct: 109 TLTGITNDDVAYAPLLEEEIHHILSFLNH--SILLGYHIQHDVAFLNEFLSR-NYRTVLQ 165

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              I+   I    +  S   L+     Y +T   R  H A  D   L +++ ++ +   Q
Sbjct: 166 QTTIEMRKIMECIYHESFPTLDDALSFYHLTPIDR--HTAKGDVMSLFEMWKRVFIELQQ 223

Query: 181 INF 183
           +  
Sbjct: 224 LQI 226


>gi|145295430|ref|YP_001138251.1| hypothetical protein cgR_1367 [Corynebacterium glutamicum R]
 gi|140845350|dbj|BAF54349.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 197

 Score = 91.4 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 15/176 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK--NSPEALKLH 63
            ++ +  D+ETTGL     +I+ IG V  ++    + +   ++   G +  +   +  +H
Sbjct: 12  DLKLLAVDVETTGLKPHRHQIVSIGWV-PINGDVIDLSGAGYVVIRGSEGFSVGSSAVIH 70

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            +TD+ +           +       Q    +AH +  +  FI+A   +     LD   +
Sbjct: 71  QLTDDEIAAGIDIEDALGQLLQAL--QGRAMLAHFSPIERDFISAACLKHFGTLLDV-PL 127

Query: 124 IDTLSIARR------KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +DT ++ RR       +P   +  L  + +RYG+   + S H AL D+   ++VY+
Sbjct: 128 VDTFAMERRHMERMSTYPRGEDLRLARIRQRYGLP--NYSNHQALTDALACAEVYL 181


>gi|325852036|ref|ZP_08171119.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
 gi|325484592|gb|EGC87508.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
          Length = 896

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 70/176 (39%), Gaps = 22/176 (12%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE------ 58
           ++   IVFD ETTGLD   D IIEI A+ +           +++   G+   P+      
Sbjct: 510 DEEEIIVFDTETTGLDVFTDDIIEIAAMRIRGGEIVGEPLDLYIE-TGKPILPKLGDKEN 568

Query: 59  -ALKLHGITDEFLKD---KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
               ++   ++        P  +     F  +        + HNA +D   ++  L+R  
Sbjct: 569 PMYAIYH--EKMAAGELLAP--AEALCRFLAYIGT--YPILGHNASYDYNILDNCLRRYC 622

Query: 115 KDPL--DPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLL 167
            D +    +R  D+L + R   PS     L SL + +   ++ ++ H A+ D    
Sbjct: 623 NDTMQAHGNRCFDSLKLIRLLAPSLHSYKLESLLETF--RLTGQNSHQAIDDVGAT 676


>gi|296451339|ref|ZP_06893077.1| exonuclease superfamily protein [Clostridium difficile NAP08]
 gi|296880311|ref|ZP_06904276.1| exonuclease superfamily protein [Clostridium difficile NAP07]
 gi|296259755|gb|EFH06612.1| exonuclease superfamily protein [Clostridium difficile NAP08]
 gi|296428754|gb|EFH14636.1| exonuclease superfamily protein [Clostridium difficile NAP07]
          Length = 258

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 99/258 (38%), Gaps = 46/258 (17%)

Query: 7   MRKIVFDIETT-GLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNG-RK 54
           M  I+FD+E   G D K +           II+IGA++L        TF  ++ P   ++
Sbjct: 1   MEYIIFDLEFNQGFDKKFNKTISNEKCPFEIIQIGAIKLDSKFNIIDTFNSYVKPTIYKE 60

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P   ++  I D    D P+F  +++ F  F + Q+         +  G +    + IN
Sbjct: 61  IHPFISRMTNIKDSDFNDSPTFPEVYNNFIKFISSQDPILCV----WGAGDLKELYRNIN 116

Query: 115 KDPLD----PSRIIDTLSIARRKH--PSSRN-DLNSLCKRYGITISHRSKHGALLDSHLL 167
              L     P   I+    A +    P+ ++  L +      +     S H AL D++  
Sbjct: 117 YHKLPSNSLPKSYINIQQHASKYFNNPAGKSIGLQNAISILELD-EKMSYHNALNDAYYT 175

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
           + V+IK+                         VP+I L    KP   R + ++  ++DK 
Sbjct: 176 AKVFIKI--------------------YNPSIVPDIYLYTSIKPKTIRYSNKKRVDYDKL 215

Query: 228 IQTLGKNAIWDRYISSNQ 245
                K  I +R ++ ++
Sbjct: 216 FDEFRK--ILNRELTKDE 231


>gi|255655351|ref|ZP_05400760.1| putative exonuclease [Clostridium difficile QCD-23m63]
          Length = 258

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 99/258 (38%), Gaps = 46/258 (17%)

Query: 7   MRKIVFDIETT-GLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNG-RK 54
           M  I+FD+E   G D K +           II+IGA++L        TF  ++ P   ++
Sbjct: 1   MEYIIFDLEFNQGFDKKFNKTISNKKCPFEIIQIGAIKLDSKFNIIDTFNSYVKPTIYKE 60

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P   ++  I D    D P+F  +++ F  F + Q+         +  G +    + IN
Sbjct: 61  IHPFISRMTNIKDSDFNDSPTFPEVYNNFIKFISSQDPILCV----WGAGDLKELYRNIN 116

Query: 115 KDPLD----PSRIIDTLSIARRKH--PSSRN-DLNSLCKRYGITISHRSKHGALLDSHLL 167
              L     P   I+    A +    P+ ++  L +      +     S H AL D++  
Sbjct: 117 YHKLPSNSLPKSYINIQQHASKYFNNPAGKSIGLQNAISILELD-EKMSYHNALNDAYYT 175

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
           + V+IK+                         VP+I L    KP   R + ++  ++DK 
Sbjct: 176 AKVFIKI--------------------YNPSIVPDIYLYTSIKPKTIRYSNKKRVDYDKL 215

Query: 228 IQTLGKNAIWDRYISSNQ 245
                K  I +R ++ ++
Sbjct: 216 FDEFRK--ILNRELTKDE 231


>gi|197286329|ref|YP_002152201.1| plasmid-related exonuclease [Proteus mirabilis HI4320]
 gi|194683816|emb|CAR44904.1| putative plasmid-related exonuclease [Proteus mirabilis HI4320]
          Length = 301

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 20/174 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPE 58
           ++   ++ D ETTGL + ++ IIE+G V++L                ++  P G+     
Sbjct: 48  DEQPMVLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIIDLISLYEDP-GKPIPEL 106

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DP 117
             +L GITD+ ++ +     I       +   +   +AHNA+FD  F       +     
Sbjct: 107 ITELTGITDDMVQGQ----HIDDSLVASWLSDDPLVVAHNAQFDRPFFENRFAALGHLSW 162

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              +  ID      +        L  L  R G        H A  D   ++ ++
Sbjct: 163 ACSASGID-----WKALGFESRKLEYLLLRLGWFYEG---HRAATDCLAMAWLF 208


>gi|227503895|ref|ZP_03933944.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC
           6940]
 gi|227199518|gb|EEI79566.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC
           6940]
          Length = 223

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 15/175 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +  R + FD+ETT ++ K  RI+    V  +D    ++     L   G +    A K
Sbjct: 1   MNFDATRMLSFDLETTSVNPKEARIVTSALVR-IDGRDVDKR--EMLADPGVEIPEAAAK 57

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGIT E    +      + ++         +     I +NA +D+  + A    +  D 
Sbjct: 58  IHGITTEKARAEGQPHDEVLAQTVRSIRQAWDDGLTLIVYNAAYDLSVLRA----LTGDF 113

Query: 118 LDPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                + D   +   + K    +  L  +   YG+T+ +   H A  D+   + +
Sbjct: 114 TVDGPVFDPFVIDRVKDKWRKGKRTLGDVSAHYGVTLEN--AHEATSDALAAARI 166


>gi|86147892|ref|ZP_01066197.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
 gi|218710857|ref|YP_002418478.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32]
 gi|85834319|gb|EAQ52472.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
 gi|218323876|emb|CAV20237.1| putative DNA polymerase III, epsilon subunit [Vibrio splendidus
           LGP32]
          Length = 210

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 81/175 (46%), Gaps = 10/175 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD     ++ I A +++ +   T++ F+V L    +     ++K+H I  
Sbjct: 30  YVSLDCETTSLDPNQAELVTIAATKIIGNRIITSQPFEVRLR-APQSLDCNSIKIHRIRH 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDT 126
           + LK          E  +F   +    + ++ ++D   +  A L+++     +    +  
Sbjct: 89  QDLKHGIEEKQALIELLNFIGNR--PLVGYHIRYDKKILDRACLKQLGFPLPNRLVEVSQ 146

Query: 127 LSIAR--RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   +  R+ P++  DL  +++C++  + I   +KH AL D+   + +++++  G
Sbjct: 147 LYQDKLERQLPNAYFDLSMDAICRQLDLPIPV-NKHDALQDAISAALIFVRLKHG 200


>gi|84393062|ref|ZP_00991828.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
 gi|84376314|gb|EAP93196.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
          Length = 210

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 81/175 (46%), Gaps = 10/175 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD     ++ I A +++ +   T++ F+V L    +     ++K+H I  
Sbjct: 30  YVSLDCETTSLDPNQAELVTIAATKIIGNRIITSQPFEVRLR-APQSLDCNSIKIHRIRH 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDT 126
           + LK          E  +F   +    + ++ ++D   +  A L+++     +    +  
Sbjct: 89  QDLKHGIEEKQALIELLNFIGNR--PLVGYHIRYDKKILDRACLKQLGFPLPNRLVEVSQ 146

Query: 127 LSIAR--RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   +  R+ P++  DL  +++C++  + I   +KH AL D+   + +++++  G
Sbjct: 147 LYQDKLERQLPNAYFDLSIDAICRQLDLPIPV-NKHDALQDAISAALIFVRLKHG 200


>gi|315295605|gb|EFU54928.1| exonuclease [Escherichia coli MS 16-3]
          Length = 282

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 15/168 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD      +EIG  +          F+  L P       +A  +HGI+++
Sbjct: 104 PLFLDTETTGLD-NTAEALEIGLTDAAGQVV----FETRLKPTVA-IGAQAAAVHGISEQ 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            L   PS++ +  +      ++    I  NA+FD+  +       +   D L+   +   
Sbjct: 158 ALCGAPSWTDVARQLRHAIGDR--PVIIFNARFDIRILKQTAAAHSDPADWLEELTVYCA 215

Query: 127 LSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +A   + ++       L     + G+T      H A+ D+ + + V
Sbjct: 216 MELAAGYYGATNRYGTISLACAASQAGLTWEG-QAHSAIADARMTAGV 262


>gi|332977795|gb|EGK14553.1| DNA-directed DNA polymerase III epsilon subunit [Psychrobacter sp.
           1501(2011)]
          Length = 201

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 76/177 (42%), Gaps = 18/177 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--NRTFQVFLCPNGRKNSPEALKLHGI 65
           + +  D E TGL+ K D ++ I A+  ++ S     +     +C      + E + +HG+
Sbjct: 32  KWVAIDCEMTGLNPKKDHLLSIAAI-HINGSNIQSGQGLH-LICRPPVMPTKETIVIHGL 89

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
               +++  S+  +      F + +    + +  + D+GF+N   +      L P+ IID
Sbjct: 90  RPIDVENGLSYEQMLERLLPFIDNR--PIVGYCPQLDMGFLNKISKSYMGTAL-PNPIID 146

Query: 126 TLSIARRKHPSSRN--------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +     ++  +R          L+S+  +  + +   + H A  D+ + + V++ +
Sbjct: 147 -IRDLYNRYSGNRTQGISHQAQQLSSIATQ--LQLPELAAHDAYNDALMTAMVFLHL 200


>gi|33240227|ref|NP_875169.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|33237754|gb|AAP99821.1| DNA polymerase III epsilon subunit [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 236

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 20/170 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           ++ D ETTGLD + D+ IE+GA+   ++           +      N  EA  ++ I+ +
Sbjct: 15  LIVDTETTGLDPEKDQCIEVGAILFHIEKRSILAQNSFLI--PAANNPAEA--INKISPD 70

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +    +      F    +  +   IAHNA+FD        Q     PL         S
Sbjct: 71  LTRFAQPWEEGVKYFLALVDIAD-VLIAHNAEFDR-------QWFGIPPLPEISKPWVCS 122

Query: 129 IARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +     PS      R  +  L   + + +   S H AL D   L +++ +
Sbjct: 123 MEDISWPSTLNLKGRPSVRDLALAFEVPVW--SAHRALTDCIYLVEIFRR 170


>gi|119774662|ref|YP_927402.1| DNA polymerase III subunit epsilon-related 3'-5' exonuclease-like
           protein [Shewanella amazonensis SB2B]
 gi|119767162|gb|ABL99732.1| DNA polymerase III epsilon subunit-related 3'-5' exonuclease-like
           protein [Shewanella amazonensis SB2B]
          Length = 228

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 15/171 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M     M  +  D+E TGLD   D+I+ IG V  +D           +    + +  ++ 
Sbjct: 37  MAESAPM--LALDLEMTGLDPGRDQILAIGVV-PIDGGIIQLQGAESVLVEIQGSVGQSA 93

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGITD  L +    +   +      N +    +AH+A  D+ FI A + R +     P
Sbjct: 94  VIHGITDRELHNALPLADAMNWLMQKMNGR--ILVAHHAPLDLAFIRANMSR-SLGISMP 150

Query: 121 SRIIDTLSIARRKH-------PSSRNDLNSLCKRYGITISHRSKHGALLDS 164
              IDTL++ R++              L +  +RYG+ +     H AL D+
Sbjct: 151 MLAIDTLALERQRLLRIHDAIQEGSLRLGASRQRYGLPVYD--AHNALTDA 199


>gi|12698423|gb|AAK01537.1| DNA polymerase III [Pseudomonas aeruginosa]
          Length = 204

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 13/175 (7%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R      ++ D+E  G    +   + I +  +++  + +      + P     + +A ++
Sbjct: 7   RWPSEPIVIVDVEGNGHTPPDLVELAIASFPVVEGEEPS---SWLIKPPN-PITWQAKRV 62

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI +  +K  P +  +  +       Q   ++AHNA  D   +   L         P  
Sbjct: 63  HGIGNSSVKGSPVWEELRGDVEQQL--QGKWFVAHNASIDYEVMKRHL-----PDWAPVG 115

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITIS-HRSKHGALLDSHLLSDVYIKMM 175
           +IDTL +AR  +P    + L++L    G+        H A  D+ + + +  +++
Sbjct: 116 VIDTLKLARHVYPDAESHSLSALLAMTGLDSEVSGELHRAGEDARVTALLLSRLL 170


>gi|320536084|ref|ZP_08036140.1| exonuclease [Treponema phagedenis F0421]
 gi|320147069|gb|EFW38629.1| exonuclease [Treponema phagedenis F0421]
          Length = 190

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 68/185 (36%), Gaps = 20/185 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHG 64
           M  I  D ETTGL+ +N    EI  +       T       L P         EA K HG
Sbjct: 1   MNTIWCDTETTGLEPENSGAFEIAFIFAGKGKVTCERL-FKLNPLNETILYHEEAAKTHG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF--------NEQNAEWIAHNAKFDVGFINAELQRINKD 116
           +++E ++  P    I     +FF        + +   +  +N  FD   + A   R    
Sbjct: 60  VSEEEIRSFPPAEEIVPNIANFFQQAIHVFGDGEKLTFAGYNCNFDYRHLEALFNRCGLT 119

Query: 117 PLDPS-RIIDTLSIAR-----RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             D   +  D L   +     +  P   N  L ++CK  G+ + +   H AL D      
Sbjct: 120 LADYFSKQFDALEFVKKATRQKAIPRLENLKLGTVCKSLGVNLEN--AHTALADIQATRA 177

Query: 170 VYIKM 174
           + I++
Sbjct: 178 LCIEL 182


>gi|221369886|ref|YP_002520982.1| hypothetical protein RSKD131_4049 [Rhodobacter sphaeroides KD131]
 gi|221162938|gb|ACM03909.1| Hypothetical Protein RSKD131_4049 [Rhodobacter sphaeroides KD131]
          Length = 538

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 16/174 (9%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K   R    D+ET   +     I +IG   +   S    T+  ++ P   +       LH
Sbjct: 213 KGPFRFFALDVETA--NHDRGSICQIGVACVRPDSSI-ETWVTYVDPQVDRWV--FTYLH 267

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI+   ++  P+FS +     D  N   A    H + FD   + A        P+     
Sbjct: 268 GISARTVQGAPTFSEVLPVLQDALN--GATIYQH-SGFDRSAVAAACINCCL-PIPQWEW 323

Query: 124 IDTLSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            D++ +AR   P  R    + L SL +  G+   H   H A  D+   ++V + 
Sbjct: 324 RDSVHVARAAWPELRGNGGHGLASLKQHLGLVFEH---HDAGEDARAAAEVVLH 374


>gi|9507445|ref|NP_052452.1| hypothetical protein ColIb-P9_p006 [Plasmid ColIb-P9]
 gi|194447291|ref|YP_002043847.1| YacC [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL476]
 gi|300820024|ref|ZP_07100202.1| exonuclease [Escherichia coli MS 107-1]
 gi|4512442|dbj|BAA75091.1| yacC [Plasmid ColIb-P9]
 gi|70610197|gb|AAZ05344.1| YacC [Salmonella enterica]
 gi|194405595|gb|ACF65816.1| YacC [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL476]
 gi|300527391|gb|EFK48453.1| exonuclease [Escherichia coli MS 107-1]
 gi|321271367|gb|ADW79457.1| hypothetical protein YacC [Escherichia coli]
 gi|323133063|gb|ADX20491.1| YacC protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323959251|gb|EGB54915.1| exonuclease [Escherichia coli H489]
 gi|325495902|gb|EGC93762.1| hypothetical protein ECD227_4199 [Escherichia fergusonii ECD227]
 gi|330907847|gb|EGH36370.1| yacC [Escherichia coli AA86]
          Length = 282

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 15/168 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD      +EIG  +          F+  L P       +A  +HGI+++
Sbjct: 104 PLFLDTETTGLD-NTAEALEIGLTDAAGQVV----FETRLKPTVA-IGAQAAAVHGISEQ 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            L   PS++ +  +      ++    I  NA+FD+  +       +   D L+   +   
Sbjct: 158 ALCGAPSWTDVARQLRHAIGDR--PVIIFNARFDIRILKQTAAAHSDPADWLEELTVYCA 215

Query: 127 LSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +A   + ++       L     + G+T      H A+ D+ + + V
Sbjct: 216 MELAAGYYGATNRYGTISLACAASQAGLTWEG-QAHSAIADARMTAGV 262


>gi|242035185|ref|XP_002464987.1| hypothetical protein SORBIDRAFT_01g029940 [Sorghum bicolor]
 gi|241918841|gb|EER91985.1| hypothetical protein SORBIDRAFT_01g029940 [Sorghum bicolor]
          Length = 435

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 14/169 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCP--NGRKNSPEALKLHGI 65
            +  D+ET+    +   ++E GAV +      +  ++   + P            +  GI
Sbjct: 20  IVFLDVETS-TPPRV--LLEFGAVVVCSRRLVDVSSYATLVRPADPDAAVPDPTARCSGI 76

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRII 124
           T + + D P F  +  + +D  + +   W  HN   FD   I      I + P +P  ++
Sbjct: 77  TRDAVADAPPFRDVADKVYDVLHGR--VWAGHNIVKFDSVIIRDAFAEIGRPPPEPKGMV 134

Query: 125 DTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           DTL +  +     +    L SL   +G+    + +H +L D  +  DV 
Sbjct: 135 DTLPLLTQWFGPRAGDMKLASLANYFGL---GKQRHRSLDDVKMNIDVL 180


>gi|254520783|ref|ZP_05132839.1| exonuclease [Clostridium sp. 7_2_43FAA]
 gi|226914532|gb|EEH99733.1| exonuclease [Clostridium sp. 7_2_43FAA]
          Length = 252

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 79/237 (33%), Gaps = 26/237 (10%)

Query: 7   MRKIVFDIE---------TTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVF 47
           M  IV D+E         TT  ++              II+IGAV++ +  +    F   
Sbjct: 1   MNYIVCDLEFNQKYIPSNTTDKNNNESIDSTMKQLPFEIIQIGAVKINENLEITSNFNEL 60

Query: 48  LCP-NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           + P      +P    +  I  + L    +FS+++  F +F  +  A            F+
Sbjct: 61  IRPIVYTDINPYVENITKINKDMLSSCETFSNVYKRFLNFLGDDEAVLCVWGKSDIKEFL 120

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKH---PSSRNDLNSLCKRYGITISHRSKHGALLD 163
                      L PS+ ID      +        +  L +  +   I   ++  H A  D
Sbjct: 121 RNIKFNNLSTSLFPSKYIDVQKHTSKLFHIQKGKQIGLKTAVEMLNIDFENK-FHNAFYD 179

Query: 164 SHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           +     V+ K+      I      + +R  K + K   +    +  K     IT EE
Sbjct: 180 ALYTYKVFKKIYN--PSIIPKIYNDNNRTHKTKVKIDTDALFKQFSKMYDKEITAEE 234


>gi|194439945|ref|ZP_03072006.1| YacC [Escherichia coli 101-1]
 gi|194421140|gb|EDX37166.1| YacC [Escherichia coli 101-1]
          Length = 282

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 15/168 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD      +EIG  +          F+  L P       +A  +HGI+++
Sbjct: 104 PLFLDTETTGLD-NTAEALEIGLTDAAGQVV----FETRLKPTVA-IGVQAAAVHGISEQ 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            L   PS++ +  +      ++    I  N++FD+  +       +   D L+   +   
Sbjct: 158 ALCGAPSWTDVARQLRHAIGDR--PVIIFNSRFDIRILKQTAAAHSDPADWLEEMTVYCA 215

Query: 127 LSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +A   + ++       L S   + G+T      H A+ D+ + + V
Sbjct: 216 MELAAGYYGATNRYGTISLASAASQAGLTWEG-QAHSAIADARMAAGV 262


>gi|157413038|ref|YP_001483904.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9215]
 gi|157387613|gb|ABV50318.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9215]
          Length = 248

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 23/203 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++ D ETTGLD   D +IEIG +      K   +   FL P    N+ EA +++GI+ 
Sbjct: 26  KILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFP---VNNNEAEQVNGISA 82

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +       +    + F    +  +   +AHN +FD  +         + P    + I +L
Sbjct: 83  DVTNISQPWEDGLNFFLKLVDYSD-FIVAHNVEFDKKWFGK-----GRLPKLNKKWICSL 136

Query: 128 SIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------MMVGG 178
                    S   R  +  L   + I + +   H AL D   +S+V+ K      +++  
Sbjct: 137 EDINWSFQKSLKNRPSVTDLALSFSIPVWN--LHRALSDCFYISEVFKKCDNLEELLLKA 194

Query: 179 SQINFGFKTN---EDRFFKEEKK 198
           ++  F +K     E+R   +   
Sbjct: 195 TEPRFLYKALVSYEERSLAKNAG 217


>gi|148977184|ref|ZP_01813811.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
 gi|145963466|gb|EDK28729.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
          Length = 210

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 80/175 (45%), Gaps = 10/175 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD     ++ I A +++ +   T++ F+V L    +     ++K+H I  
Sbjct: 30  YVSLDCETTSLDPNQAELVTIAATKIIGNRIITSKPFEVRLR-APQSLDCNSIKIHRIRH 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDT 126
           + LK          E   F   +    + ++ ++D   +  A L+++     +    +  
Sbjct: 89  QDLKHGIEEKQALIELLSFIGNR--PLVGYHIRYDKKILDRACLKQLGFPLPNRLMEVSQ 146

Query: 127 LSIAR--RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           L   +  R+ P++  DL  +++C++  + I   +KH AL D+   + +++++  G
Sbjct: 147 LYQDKLERQLPNAYFDLSMDAICRQLDLPIPV-NKHDALQDAISAALIFVRLKHG 200


>gi|118577408|ref|YP_899648.1| exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus
           DSM 2379]
 gi|118504913|gb|ABL01395.1| Exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus
           DSM 2379]
          Length = 304

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 63/168 (37%), Gaps = 21/168 (12%)

Query: 6   KMRKI--VFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSP 57
           K R++    D ETTG +  +D IIE+G V         + S+   T+  F  P  R   P
Sbjct: 42  KTRRVGLCIDTETTGFNFSDDVIIELGIVAFEYDAMTGEISRIVDTYSGFEDP-CRPLDP 100

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           E   + GITD+ L  +    +   +       Q +    HN KFD  F+        K P
Sbjct: 101 EVTAVTGITDDMLAGQSLDDAAVGKIV----SQASLCFCHNCKFDRSFLERRFPEFEKLP 156

Query: 118 LDPSRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
                   T+S    +    +   L  L  + G        H AL D+
Sbjct: 157 FA-----CTMSQIDWKNELVTSRTLEYLLYKCGACFID--AHRALNDA 197


>gi|255743723|ref|ZP_05417681.1| polymerase epsilon subunit like protein [Vibrio cholera CIRS 101]
 gi|255738584|gb|EET93971.1| polymerase epsilon subunit like protein [Vibrio cholera CIRS 101]
 gi|259156231|gb|ACV96178.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ban5]
 gi|259156377|gb|ACV96322.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ind5]
          Length = 301

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 66/177 (37%), Gaps = 20/177 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPE 58
           ++   ++ D ETTGL + ++ IIE+G V++L                ++  P G+     
Sbjct: 48  DEQPMVLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDP-GKPIPEL 106

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DP 117
             +L GITDE ++ +            + ++ +   +AHNA+FD  F             
Sbjct: 107 ITELTGITDEIVQGQ-RIDDAM--VASWLSD-DPLVVAHNAQFDRPFFEKRFAAFGHLSW 162

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +  ID      +        L  L  R G        H A  D   ++ ++  +
Sbjct: 163 ACSASGID-----WKALGFESRKLEYLLLRLGWFYEG---HRAATDCLAMAWLFHLL 211


>gi|300858788|ref|YP_003783771.1| hypothetical protein cpfrc_01371 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686242|gb|ADK29164.1| hypothetical protein cpfrc_01371 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206493|gb|ADL10835.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis C231]
 gi|302331048|gb|ADL21242.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276735|gb|ADO26634.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis I19]
          Length = 453

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 9/151 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS--PEALKLHGIT 66
               D+ET   +     I +IG V++ D   T++  +    P    N   P  + +HGI 
Sbjct: 106 FAAVDVETA--NDDWGSICQIGVVKVKDGVITDKC-EWLCQPPAAINHFAPANIAIHGIR 162

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +K    FS  F+E   F  +      AHNA+FD+       Q  N   L       +
Sbjct: 163 PNDVKTAQPFSECFAEMLSFVGK--LPLAAHNAQFDMTAFFRAAQAENLV-LPTVAFGCS 219

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRS 156
           L+++R  +     + L ++ K   + +++  
Sbjct: 220 LALSRAANLGTPNHKLPTVAKHLNVDLTNHH 250


>gi|292670219|ref|ZP_06603645.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648171|gb|EFF66143.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 179

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 16/174 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFD ETTG  S +D ++ +  V+    +  +  +     P  +   P+A K++ I+ 
Sbjct: 4   KILVFDTETTGFRS-DDEVLTLAVVDGAGATVVDGMY----APVRKNAWPDAEKINRISP 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + + P   +  +E    FN+     + +N +FD+  +     RI     +P+R    L
Sbjct: 59  AMVVNCPPILAQQAELERMFNDPETLLVGYNIEFDIRLLAQSGIRIQ----NPNRHDVML 114

Query: 128 SIAR-RKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +  RK P +R        L      Y         HGAL D+      Y KM
Sbjct: 115 AFSEFRKVPDARRGGYRWWKLAECADYYRYDWGTTKAHGALADTLATLFCYQKM 168


>gi|148652365|ref|YP_001279458.1| DNA polymerase III subunit epsilon [Psychrobacter sp. PRwf-1]
 gi|148571449|gb|ABQ93508.1| Exonuclease, RNase T and DNA polymerase III [Psychrobacter sp.
           PRwf-1]
          Length = 201

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 74/174 (42%), Gaps = 14/174 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGIT 66
            +  D E +GL++K + ++ I A+  ++ S  +  +     +C      + + + +HG+ 
Sbjct: 33  WVAIDCEMSGLNAKKNHLLSIAAI-HINGSVIDTGQGLH-LICRPPVMPTKDTIIIHGLR 90

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIID 125
              +++  S+  + ++   F   +    +    + D+ F+N  ++      L  P   I 
Sbjct: 91  PIDVENGLSYEQMLAKLLPFIGNR--PIVGFCPQLDISFLNPLVKAYMGTYLPNPVIDIR 148

Query: 126 TLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           TL         +  P   + L+++C++  +     + H A  D+ + +  ++ +
Sbjct: 149 TLYNRYSGNRTQGIPHQSSHLSAICQQLKLP--DMAAHDAYNDAIMTAMAFLLL 200


>gi|301051375|ref|ZP_07198192.1| exonuclease [Escherichia coli MS 185-1]
 gi|300296987|gb|EFJ53372.1| exonuclease [Escherichia coli MS 185-1]
          Length = 282

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 15/168 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD      +EIG  +          F+  L P       +A  +HGI+++
Sbjct: 104 PLFLDTETTGLD-NTAEALEIGLTDAAGQVV----FETRLKPTVA-IGAQAAAVHGISEQ 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            L   PS++ +  +      ++    I  NA+FD+  +       +   D L+   +   
Sbjct: 158 ALCGAPSWTDVARQLRHAIGDR--PVIIFNARFDIRILKQTAAAHSDPADWLEELTVYCA 215

Query: 127 LSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +A   + ++       L     + G+T      H A+ D+ + + V
Sbjct: 216 MELAAGYYGATNRYGTISLACAASQAGLTWEG-QAHSAIADARMTAGV 262


>gi|111022071|ref|YP_705043.1| DNA polymerase III subunit epsilon [Rhodococcus jostii RHA1]
 gi|110821601|gb|ABG96885.1| DNA polymerase [Rhodococcus jostii RHA1]
          Length = 231

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 9/160 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +      FD+ETTG D  + RI+      +  +   +RT+   L P        A 
Sbjct: 1   MTSWSDRPICAFDLETTGPDPTDARIVSACIAVVDAHHFESRTW--LLDPE-VPIPQGAS 57

Query: 61  KLHGITDEFLK-DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKD 116
            +HGI+ E+ +     +++ + E  +  ++   ++   +A NA +D+  ++ E  R+   
Sbjct: 58  DVHGISTEYARAHGQDYATGYGEIREALHDAWTRDHAVVAFNASYDLTVMHTEGLRLGLA 117

Query: 117 PLDPSRIIDTLSIARRK--HPSSRNDLNSLCKRYGITISH 154
            L    ++D   I R    H   R  L ++C+ YGI +  
Sbjct: 118 ELVTGIVVDPYVIDREMDRHRKGRRTLGAVCEHYGIALED 157


>gi|296119586|ref|ZP_06838144.1| exonuclease [Corynebacterium ammoniagenes DSM 20306]
 gi|295967469|gb|EFG80736.1| exonuclease [Corynebacterium ammoniagenes DSM 20306]
          Length = 212

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 72/173 (41%), Gaps = 14/173 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGL  K  +I+ IG V + +        Q ++   G     E+  +H + D 
Sbjct: 29  FLAVDMETTGLKPKQHQIVSIGWVPIKNNRVQLSGAQ-YVLIKGVDV-GESATIHHLRDS 86

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+          +     + +    +AH A  +  F +   +++         ++DT +
Sbjct: 87  DLEKGMELEEGIDKLTA--DLRGKAMLAHFAPIETSFYSHACKKLWGKE-PHLEVVDTFA 143

Query: 129 IARR------KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + RR       +P   +  L+ +  RYG+   +   H AL D+   +++Y+ M
Sbjct: 144 LERRHMERMSTYPRGEDLRLSRVRARYGLP--NYPSHNALTDAIACAELYLAM 194


>gi|254525958|ref|ZP_05138010.1| exonuclease [Prochlorococcus marinus str. MIT 9202]
 gi|221537382|gb|EEE39835.1| exonuclease [Prochlorococcus marinus str. MIT 9202]
          Length = 259

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 23/203 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++ D ETTGLD   D +IEIG +      K   +   FL P    N+ EA  ++GI+ 
Sbjct: 37  KILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFP---VNNNEAEHVNGISA 93

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +       +    + F    +  +   +AHN +FD  +         + P    + I +L
Sbjct: 94  DVTNISQPWEDGLNFFLKLVDYSD-FIVAHNVEFDKKWFGK-----GRLPKLNKKWICSL 147

Query: 128 S---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------MMVGG 178
                + +K   SR  +  L   + I + +   H AL D   +S+V+ K      +++  
Sbjct: 148 EDINWSFQKSLKSRPSVTDLALSFSIPVWN--LHRALSDCFYISEVFKKCDNLEELLLKA 205

Query: 179 SQINFGFKTN---EDRFFKEEKK 198
           ++  F +K     E+R   +   
Sbjct: 206 TEPRFLYKALVSYEERSLAKNAG 228


>gi|168770686|ref|ZP_02795693.1| YacC [Escherichia coli O157:H7 str. EC4486]
 gi|189360489|gb|EDU78908.1| YacC [Escherichia coli O157:H7 str. EC4486]
          Length = 282

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 15/168 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD      +EIG  +          F+  L P       +A  +HGI+++
Sbjct: 104 PLFLDTETTGLD-NTAEALEIGLTDASGQVV----FETRLKPTVA-IGAQAAAVHGISEQ 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            L   PS++ +  +      ++    I  NA+FD+  +       +   D L+   +   
Sbjct: 158 ALCGAPSWTDVARQLRHAIGDR--PVIIFNARFDIRILKQTAAAHSDPADWLEELSVYCA 215

Query: 127 LSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +A   + ++       L     + G+T      H A+ D+ + + V
Sbjct: 216 MELAAGYYGATNRYGTISLACAASQAGLTWEG-QAHSAIADARMTAGV 262


>gi|148239379|ref|YP_001224766.1| DNA polymerase III epsilon subunit [Synechococcus sp. WH 7803]
 gi|147847918|emb|CAK23469.1| DNA polymerase III epsilon subunit [Synechococcus sp. WH 7803]
          Length = 272

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 20/172 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++ D ETTGLD+  D+ +E+GA+   + + +        L P        A  ++ I 
Sbjct: 43  RLLIVDTETTGLDADRDQCLELGAILFSIPHRQVLAQMSCLL-PVDHNP---AEAINRIP 98

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E  +    +    + F       +   +AHNA FD  +           P      + T
Sbjct: 99  AEVSRLDQPWGDGLAWFERMMASAD-YLVAHNAAFDRQWFGR-----GSLPEATRPWLCT 152

Query: 127 LSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L   R   P +RN      +  L   YGI +   S H AL D   L++V+ +
Sbjct: 153 LEDVR--WPEARNLRARPSVIDLALAYGIPVW--SAHRALTDCMYLAEVFQR 200


>gi|260903685|ref|ZP_05912007.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium linens BL2]
          Length = 578

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 17/158 (10%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++ R + FD+ETTG+D    RI+    VE  + ++       +L   G +    A  +H
Sbjct: 356 WSQSRLVGFDLETTGVDPATARIVTAAFVESAENAR------TWLADPGVEIPEPARAVH 409

Query: 64  GITDEFLK--DKPSFSSIFS--EFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INK 115
           GIT EF +    P    +            + A  + HN  +D+  ++AE++R    I  
Sbjct: 410 GITTEFAQANGAPVAEVVAELCTVLADLKAEGAVVVGHNIVYDLSVMSAEVKRHQPHIGL 469

Query: 116 DPLDPSRIIDTLSIARRK--HPSSRNDLNSLCKRYGIT 151
             L P  I+DT  + ++       +  L    KR+ ++
Sbjct: 470 AALLP-TIVDTFVLDKKVEQFRRGKRTLTETAKRWKVS 506


>gi|254295263|ref|YP_003061286.1| exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC
           49814]
 gi|254043794|gb|ACT60589.1| Exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC
           49814]
          Length = 192

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 15/174 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           ++  R I  D+ET   ++    I +IG +  + +      +  ++ P+    S    KLH
Sbjct: 5   EDDYRFIALDVETA--NNDRASICQIG-LACVGWDGEILIWSTYVNPD-VSFSAFNTKLH 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI  + ++    F  ++     F  +     + H ++FD   INA  Q ++  PL     
Sbjct: 61  GIGADTVRHAQMFPDVWGRLQPFLKQH--AMVQH-SRFDELAINAACQ-MHALPLPRLAW 116

Query: 124 IDTLSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            D++ +A++  P  +    + L+SL KR G+   H   H A  D+   + + ++
Sbjct: 117 TDSVKVAQQAWPQFKGNGGHGLSSLKKRLGLKFKH---HDAGEDAGASAQIILR 167


>gi|88703768|ref|ZP_01101484.1| DNA polymerase III, epsilon subunit [Congregibacter litoralis KT71]
 gi|88702482|gb|EAQ99585.1| DNA polymerase III, epsilon subunit [Congregibacter litoralis KT71]
          Length = 203

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 16/178 (8%)

Query: 9   KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            IV D ETTGL  +N    I+ +G + ++   +  ++ +    P  R  S EA  +HGIT
Sbjct: 18  YIVLDTETTGLPDENGLPDIVTLG-ITVVRQREIAKSVEFKTRPKKR-ISEEAQSIHGIT 75

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +E   +  SF S +S   ++  +Q    + HNA FD   +   + R N        +  +
Sbjct: 76  NEQAAEFKSFDSQWSHMAEYLKDQ--LIVIHNASFDWPILRDHVVRYNLTTPSIKGVFCS 133

Query: 127 LS----IARRKHPSSRN---DLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKM 174
                  A+    S  +    +++L K  G+          HGA +DS   + +   M
Sbjct: 134 QKAATPWAQAMDLSCSHRGPSVDTLTKSLGVENLRAKKDGVHGAEIDSQQAAQILEVM 191


>gi|156346891|ref|XP_001621564.1| hypothetical protein NEMVEDRAFT_v1g248663 [Nematostella vectensis]
 gi|156207642|gb|EDO29464.1| predicted protein [Nematostella vectensis]
          Length = 460

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 79/208 (37%), Gaps = 42/208 (20%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEA 59
           +   +    ++FD ETTGLD+ ND II++        S+        ++ P G      A
Sbjct: 148 LTEWDDYTSVMFDTETTGLDTSNDDIIQLAC-----ASENGDNLHSRYMFPRG-SIDLGA 201

Query: 60  LKLHGITDEF-------LKDKPSFSSI------FSEFWDFFN------EQNAEWIAHN-A 99
            ++HGI+  F       +KD    + +        EF  F         +    +AH   
Sbjct: 202 TRVHGISKAFIDGSRVLVKDGRPLADVASQKDGLREFIAFLKMHQSQSPKRLCLVAHYGD 261

Query: 100 KFDVGFINAELQRINKDPLDPSRI---IDTLSIARRKHPSSRN---------DLNSLCKR 147
            FD   +   L+R N      S     +D++ + R      ++          L++L   
Sbjct: 262 SFDFRLLINCLKRHNLMNEFISTGSVLLDSVKVVRASKKQEKSPFDSSFKKESLSALHGH 321

Query: 148 -YGITISHRSKHGALLDSHLLSDVYIKM 174
            +G+ I     H A  D+  LS V +K+
Sbjct: 322 LFGVPID--RPHDAQADACALSKVLMKI 347


>gi|68536400|ref|YP_251105.1| DNA polymerase III subunit epsilon [Corynebacterium jeikeium K411]
 gi|68263999|emb|CAI37487.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium K411]
          Length = 227

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 11/151 (7%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D K  RI+    V +    + +      L   G +   +A  +HGIT E+++
Sbjct: 17  FDLETTGVDPKTARIVTSALVTIKGRERNDIEM---LADPGVEIPQQASDVHGITTEYVR 73

Query: 72  D-KPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +       + ++  +         A  I +NA +D+  + A       D       +  +
Sbjct: 74  EHGQDHGEVLAKTIEGIRAAWRSGATLIVYNAAYDLSVLRALEPSFTVDGPVFDPYV--V 131

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
             A+ ++   +  L S+C+ YG+T+ +   H
Sbjct: 132 DRAKDQYRKGKRTLESVCQHYGVTLDN--AH 160


>gi|262194253|ref|YP_003265462.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077600|gb|ACY13569.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 10/175 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNG-RKNSPEALKLHG 64
              +  D ETTGLD +   I+EI A+ +     +  RT  + + P       PEAL+++G
Sbjct: 2   QPLVFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERTLVLRVRPERLEDADPEALEVNG 61

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRI 123
                  D  S     +E       + A    HN  FD  F+ A    +   P +     
Sbjct: 62  YHQRVWVDAVSLDEALAELAPML--EGAVLAGHNVAFDRRFLEAAWDYVGHRPENLDHHA 119

Query: 124 IDTLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DT ++A     +       L  +C   G+       H A  D      V  +++
Sbjct: 120 LDTAALAFPLLMAGEIDSLSLTPVCAHLGVLRGEE--HWAFDDVRACLGVARRLL 172


>gi|194446846|ref|YP_002039036.1| YacC [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
 gi|218534571|ref|YP_002401101.1| putative exoribonuclease YacC [Escherichia coli S88]
 gi|194358598|gb|ACF57041.1| YacC [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
 gi|218349775|emb|CAQ87168.1| putative exoribonuclease YacC [Escherichia coli S88]
 gi|301130428|gb|ADK62229.1| putative exonuclease protein [Salmonella enterica subsp. enterica
           serovar Kentucky]
 gi|301130557|gb|ADK62357.1| putative exonuclease protein [Salmonella enterica subsp. enterica
           serovar Kentucky]
 gi|315285557|gb|EFU44999.1| exonuclease [Escherichia coli MS 110-3]
 gi|323948908|gb|EGB44804.1| exonuclease [Escherichia coli H252]
          Length = 282

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 15/168 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD      +EIG  +          F+  L P       +A  +HGI+++
Sbjct: 104 PLFLDTETTGLD-NTAEALEIGLTDASGQVV----FETRLKPTVA-IGAQAAAVHGISEQ 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            L   PS++ +  +      ++    I  NA+FD+  +       +   D L+   +   
Sbjct: 158 ALCGAPSWTDVARQLRHAIGDR--PVIIFNARFDIRILKQTAAAHSDPADWLEELTVYCA 215

Query: 127 LSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +A   + ++       L     + G+T      H A+ D+ + + V
Sbjct: 216 MELAAGYYGATNRYGTISLACAASQAGLTWEG-QAHSAIADARMTAGV 262


>gi|323143472|ref|ZP_08078155.1| putative DNA polymerase III, epsilon subunit [Succinatimonas hippei
           YIT 12066]
 gi|322416757|gb|EFY07408.1| putative DNA polymerase III, epsilon subunit [Succinatimonas hippei
           YIT 12066]
          Length = 321

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 64/170 (37%), Gaps = 22/170 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE---LLDYSK---TNRTFQVFLCPNGRKNSPEALKLH 63
           +  D ETTG+D   ++IIE+G V      D       +R +  F  P G+K   E  +L 
Sbjct: 79  VFLDTETTGMDCNQEKIIELGMVRVTYSFDRKLMLSIDRIYDEFEDP-GKKIPLEIQQLT 137

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            ITDE +      +   S+            +AHNAKFD  F +          L     
Sbjct: 138 HITDEMVAGHRFDNDSVSQILA----GRPLVVAHNAKFDRPFFDRRF-----PTLSDLSW 188

Query: 124 IDTLS-IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             +LS +       +   L  LC+  G        H A  D   L  +++
Sbjct: 189 ACSLSGVNWDALGDNGRKLEFLCQVRGWFYD---AHRAYDDCLAL--LWL 233


>gi|242039735|ref|XP_002467262.1| hypothetical protein SORBIDRAFT_01g022250 [Sorghum bicolor]
 gi|241921116|gb|EER94260.1| hypothetical protein SORBIDRAFT_01g022250 [Sorghum bicolor]
          Length = 505

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 19/174 (10%)

Query: 9   KIVFDIET-----TGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCP--NGRKNSPEAL 60
              FD+ET      G   +   ++E GA+ +         ++   + P       S  ++
Sbjct: 41  IAFFDVETSVPQRAG---QGYALLEFGAILVCPRRLVEVASYATLVRPADPVSAVSAASV 97

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD 119
           + +GIT + +   P F  +    +D  N +   W  HN  +FD   I      I + P  
Sbjct: 98  RCNGITRDAVSGAPPFRDVADAVYDLLNGR--VWAGHNIVRFDSARIREAFTEIGRSPPQ 155

Query: 120 PSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           P  +IDTL +  ++    +    + SL   +G+    + +H +L D  +  +V 
Sbjct: 156 PKGMIDTLPLLTQRFGRRAGDMKMASLANYFGL---GKQRHRSLDDVRMNLEVL 206


>gi|313682834|ref|YP_004060572.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155694|gb|ADR34372.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 293

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 29/187 (15%)

Query: 7   MRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           MR  I+ D ETTG   + DRI ++  +   +  +        LC      S EA+ +H I
Sbjct: 1   MRHTIILDTETTG-AGEVDRICQLSYLVCDEKGEILE-LHNDLCTPPLPISFEAMAIHHI 58

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           T E L   P       F+   +  N  +   +  NA+FD+G +  E   +        ++
Sbjct: 59  TPEMLTGAPKCIETSAFNRLAE-LNTPDNLMVIQNAEFDLGMLAKEGMGL------EMKL 111

Query: 124 IDTLSIARRKHP-SSRNDLNS-------------LCKRYGITISHRSKHGALLDSHLLSD 169
           +DT  + R  HP  + + L               L  + GI I     H AL D  +L  
Sbjct: 112 VDTFRVLRAWHPLDTPHGLQFKRYQWGLYHKEQPLIDKLGIEI---KAHDALGDVIVLKH 168

Query: 170 VYIKMMV 176
           +Y K++ 
Sbjct: 169 LYEKLLE 175


>gi|313114310|ref|ZP_07799845.1| exonuclease [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623365|gb|EFQ06785.1| exonuclease [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 143

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
                E   L G++   L+         + F  F  +     + HN  FD+ F+    +R
Sbjct: 20  ENVPAEITALTGLSAAELQQGTEPREALNSFLLFIGKD--PLVGHNIAFDLEFLRMTCKR 77

Query: 113 INKDPLDPSRIIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               P   +R ID   +ARR     +   L +L + +   ++ + +H AL D  L+  VY
Sbjct: 78  YGF-PAPTNRQIDLAQLARRNLTRIANYKLVTLAQHF--QLAEKVEHRALPDCRLIQQVY 134

Query: 172 IKM 174
            K+
Sbjct: 135 CKL 137


>gi|254974887|ref|ZP_05271359.1| putative exonuclease [Clostridium difficile QCD-66c26]
 gi|255092274|ref|ZP_05321752.1| putative exonuclease [Clostridium difficile CIP 107932]
 gi|255314014|ref|ZP_05355597.1| putative exonuclease [Clostridium difficile QCD-76w55]
 gi|255516694|ref|ZP_05384370.1| putative exonuclease [Clostridium difficile QCD-97b34]
 gi|255649792|ref|ZP_05396694.1| putative exonuclease [Clostridium difficile QCD-37x79]
 gi|306519894|ref|ZP_07406241.1| putative exonuclease [Clostridium difficile QCD-32g58]
          Length = 258

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 99/258 (38%), Gaps = 46/258 (17%)

Query: 7   MRKIVFDIETT-GLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNG-RK 54
           M  I+FD+E   G D K +           II+IGA++L        TF  ++ P   + 
Sbjct: 1   MEYIIFDLEFNQGFDKKLNKTVSNEKCPFEIIQIGAIKLDSKFNIIDTFNSYVKPTIYKD 60

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P   ++  I +    D P+F  +++ F  F + Q+         + VG +    + IN
Sbjct: 61  IHPFISRMTNIKNSDFNDSPTFPEVYNNFIKFISSQDPILCV----WGVGDLKELYRNIN 116

Query: 115 KDPLD----PSRIIDTLSIARRKH--PSSRN-DLNSLCKRYGITISHRSKHGALLDSHLL 167
              L     P   I+    A +    P+ ++  L +      +     S H AL D++  
Sbjct: 117 YHKLPSSSLPKSYINIQQHASKYFNNPAGKSIGLQNAISILELD-EKMSYHNALNDAYYT 175

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
           + V+IK+                         VP+I L    KP   R + ++  ++DK 
Sbjct: 176 AKVFIKI--------------------YNPSIVPDIYLYTSIKPKTIRYSNKKRVDYDKL 215

Query: 228 IQTLGKNAIWDRYISSNQ 245
                K  I +R ++ ++
Sbjct: 216 FDEFRK--ILNRELTKDE 231


>gi|332519635|ref|ZP_08396099.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola
           5H-3-7-4]
 gi|332044194|gb|EGI80388.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola
           5H-3-7-4]
          Length = 398

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L++ P F  +     +    +    +AHNA+FD   +  E +R+  +       + T+ 
Sbjct: 1   MLRNAPKFYEVAKRIVEI--TEGCIIVAHNAQFDNRILRTEFKRLGFEF--ERETLCTVE 56

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +++   P      L  L +  GI ++ R  H A  D+     ++  ++
Sbjct: 57  LSKTLIPDLPSYSLGKLVRSLGIPVTDR--HRASGDALATVKLFKLLL 102


>gi|304383117|ref|ZP_07365592.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii
           DSM 16973]
 gi|304335803|gb|EFM02058.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii
           DSM 16973]
          Length = 889

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 12/165 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL-HGITD 67
           +VFD ETTGLD   D I+++ A+++ +       +F VF+    R+       + + I +
Sbjct: 504 VVFDTETTGLDVFADDIVQLAAIKVRNGKVVEGSSFNVFIR-TEREIPAMLGDIPNPIIE 562

Query: 68  EF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR---I 123
           E    +  S    F++F D+  +     + HN ++D   +   L R     ++  +    
Sbjct: 563 EMKHHECLSPEEAFAQFMDYVADD--AVLGHNVEYDFHILLYNLLRHAPQWVERWKAVER 620

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLL 167
            D+L + R  HP  +   L  L +R G  +   + H A  D    
Sbjct: 621 FDSLKLIRLLHPRQKSYKLKHLLERLG--LEGTNSHLADDDIMAT 663


>gi|328464770|gb|EGF36087.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus MTCC
           5462]
          Length = 140

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I  D ET   + K      +  V +      + +F   + P   +  P+ +++HGIT
Sbjct: 1   MDFIAMDFETA--NRKRASACSLALVVVQQNRVVD-SFYTLINPQ-MQFDPQNIRIHGIT 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + ++++P+F  ++     F+        AHNA FDV  +   L R         ++IDT
Sbjct: 57  PDMVQNQPTFDRVWPHIQMFYTP-GRIVTAHNAPFDVSVLRLTLDRYGI-AAPSYQVIDT 114

Query: 127 LSIA 130
           +   
Sbjct: 115 VKHH 118


>gi|255306302|ref|ZP_05350473.1| putative exonuclease [Clostridium difficile ATCC 43255]
          Length = 258

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 99/258 (38%), Gaps = 46/258 (17%)

Query: 7   MRKIVFDIETT-GLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNG-RK 54
           M  I+FD+E   G D K +           II+IGA++L        TF  ++ P   ++
Sbjct: 1   MEYIIFDLEFNQGFDKKLNKTVSNEKCPFEIIQIGAIKLDSKFNIIDTFNSYIKPTIYKE 60

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P   ++  I +    D P+F  +++ F  F + Q+         +  G +    + IN
Sbjct: 61  IHPFISRMTNIKNSDFNDSPTFPEVYNNFIKFISSQDPILCV----WGAGDLKELYRNIN 116

Query: 115 KDPLD----PSRIIDTLSIARRKH--PSSRN-DLNSLCKRYGITISHRSKHGALLDSHLL 167
              L     P   I+    A +    P+ ++  L +      +     S H AL D++  
Sbjct: 117 YHKLPSNSLPKSYINIQQHASKYFNNPAGKSIGLQNAISILELD-EKMSYHNALNDAYYT 175

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
           + V+IK+                         VP+I L    KP   R + ++  ++DK 
Sbjct: 176 AKVFIKI--------------------YNPSIVPDIYLYTSIKPKTIRYSNKKRVDYDKL 215

Query: 228 IQTLGKNAIWDRYISSNQ 245
                K  I +R ++ ++
Sbjct: 216 FDEFRK--ILNRELTKDE 231


>gi|294787077|ref|ZP_06752331.1| DNA polymerase III, epsilon subunit [Parascardovia denticolens
           F0305]
 gi|294485910|gb|EFG33544.1| DNA polymerase III, epsilon subunit [Parascardovia denticolens
           F0305]
          Length = 244

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 68/186 (36%), Gaps = 17/186 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG     D I     V               ++   G   +P A +++G TD +L
Sbjct: 18  FDTETTGACYGTDAIASASLVLRDPAAGFPGDRISQWIINPGVPMNPFASQVNGFTDAYL 77

Query: 71  KD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123
           ++       +   I          +    +A+NA FDV  ++ +L+R+    L+      
Sbjct: 78  QEHGQDQAEAIGQIAETIL-LAQSKRIPLLAYNAPFDVAMLDGDLRRLGDRNLNQQTQDL 136

Query: 124 ------IDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                 +D L + R   H   +  L      YG+   H S H A  D+    D+   M+ 
Sbjct: 137 GHELLIVDPLVLDRSVSHRKGKRTLTDTTYYYGVQ-PHGSFHDATADTIAAVDLVAPMVT 195

Query: 177 GGSQIN 182
              Q+ 
Sbjct: 196 LYPQVG 201


>gi|33867257|ref|NP_898815.1| putative exonuclease X [Rhodococcus erythropolis]
 gi|33669091|gb|AAP74085.1| putative exonuclease X [Rhodococcus erythropolis]
          Length = 201

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 26/187 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            + D+ET+GL      IIE+  ++    +    T    +     +  P+A  +H IT   
Sbjct: 31  CILDVETSGL---EGSIIEVAVIDAASGAVLLDT---LVDCGPVQIEPDAHAVHSITAAD 84

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128
           L D P +  +F++          + +A+NA+FD G +  +  R   DP   +        
Sbjct: 85  LDDAPRWPEVFAQLAAI--TSGRQVLAYNAQFDQGRVLHDCHRSGIDPGHLAEAGRWQCV 142

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSK----HGALLDSHLLSDVYIKMMVGGSQINFG 184
           +ARR            C   G+    R +    H AL D        ++++  G     G
Sbjct: 143 MARR------------CAALGLGAEGRVRLGGGHRALADVRAT-RALVQLLAAGLPDAAG 189

Query: 185 FKTNEDR 191
               EDR
Sbjct: 190 LAALEDR 196


>gi|237702502|ref|ZP_04532983.1| yacC [Escherichia sp. 3_2_53FAA]
 gi|226903283|gb|EEH89542.1| yacC [Escherichia sp. 3_2_53FAA]
          Length = 282

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 15/168 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD      +EIG  +          F+  L P       +A  +HGI+++
Sbjct: 104 PLFLDTETTGLD-NTAEALEIGLTDAAGQVV----FETRLKPTVA-IGAQAAAVHGISEQ 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            L   PS++ +  +      ++    I  NA+FD+  +       +   D L+   +   
Sbjct: 158 ALCGAPSWTDVARQLRHAIGDR--PVIIFNARFDIRILKQTAAAHSDPADWLEELTVYCA 215

Query: 127 LSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +A   + ++       L S   + G+T      H A+ D+ + + V
Sbjct: 216 MELAAGYYGATNRYGTISLASAASQAGLTWEG-QAHSAIADARMAAGV 262


>gi|88808413|ref|ZP_01123923.1| Exonuclease [Synechococcus sp. WH 7805]
 gi|88787401|gb|EAR18558.1| Exonuclease [Synechococcus sp. WH 7805]
          Length = 272

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 20/172 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++ D ETTGLD+  D+ +E+GA+   + + +        L      ++P A  ++ I 
Sbjct: 43  RLLIVDTETTGLDADRDQCLEVGAILFSVPHRQVLAQMSCLL---PVDSNP-AESINRIP 98

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E  + +  +    + F       +   +AHNA FD  +           P      + T
Sbjct: 99  AEVSRVEQPWGDGLAWFERMMMSAD-YLVAHNAAFDRQWFGR-----GALPEAKRPWLCT 152

Query: 127 LSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L   R   P +RN      +  L   YGI +   S H AL D   L++V+ +
Sbjct: 153 LEDIR--WPEARNLKARPSVIDLALAYGIPVW--SAHRALTDCIYLAEVFQR 200


>gi|150018815|ref|YP_001311069.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905280|gb|ABR36113.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
          Length = 255

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 95/243 (39%), Gaps = 35/243 (14%)

Query: 7   MRKIVFDIETTGLDSKND------------------------RIIEIGAVELLDYSKTNR 42
           M  +++D+E    + +++                         II+IGA++L +  +   
Sbjct: 1   MYYVIYDLE---FNQRSNASEDCNNINFSKFNDDTNIPLIPFEIIQIGAIKLDNNFQEVS 57

Query: 43  TFQVFLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
           TF   + P   K   P    L  IT + +    +F ++   F +F  + +          
Sbjct: 58  TFNSLVKPTLYKTIHPYVENLTKITYDKVSSCKNFINVHKAFLEFIGDDDVLLCVW-GVG 116

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND---LNSLCKRYGITISHRSKH 158
           D+  +   L   N      S+ ID    A +   + +N    L +  +   I I     H
Sbjct: 117 DIKELYRNLGFYNLSTSYISKYIDIQKYASKYLKAPKNSRIGLRNAVEILNIPIYSE-FH 175

Query: 159 GALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR-IT 217
            AL D++  S+++ ++     +      +   R   E K+ + N +LLK+ + ++ R +T
Sbjct: 176 DALNDAYYTSEIFKRIYNKYMKPETYVPSPAKRT-TEPKEVIDNEALLKQFEKMYNRELT 234

Query: 218 KEE 220
           K+E
Sbjct: 235 KDE 237


>gi|218898629|ref|YP_002447040.1| exonuclease family protein [Bacillus cereus G9842]
 gi|218544259|gb|ACK96653.1| exonuclease family protein [Bacillus cereus G9842]
          Length = 281

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 15/181 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR----IIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSP 57
            KN    IVFDIE              I++IGAV+  +   K    F   + P+ R  + 
Sbjct: 1   MKNATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIKIGTMKIIEEFSELVKPSAR-LTR 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              KL GIT E L     F  I  +F  F   ++  +++   + D  F++ +      + 
Sbjct: 59  HTTKLTGITKEDLIGVEKFPQIVEKFIQFIG-EDCIFVSWGKE-DYRFLSHDCALHGVEC 116

Query: 118 --LDPSRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             ++    ID    +  A  +       L    ++ G+T   +  H AL D+   +++ +
Sbjct: 117 PSIEKENRIDLQKFVFQAYEELFEHTPSLQFAVEQLGLTWEGKQ-HRALADAENTANILL 175

Query: 173 K 173
           K
Sbjct: 176 K 176


>gi|160893764|ref|ZP_02074548.1| hypothetical protein CLOL250_01318 [Clostridium sp. L2-50]
 gi|156864749|gb|EDO58180.1| hypothetical protein CLOL250_01318 [Clostridium sp. L2-50]
          Length = 216

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 14/178 (7%)

Query: 7   MRKIVFDIETTGLDSKN--------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  I  D E   +D+ +        + IIEIGAV+L D  K   +F+ ++ P     +  
Sbjct: 1   MEYIFVDFEMNQIDNSHPDELKICKNEIIEIGAVKLDDTYKEIDSFKTYVKPGITPVTSR 60

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
              L GIT+E + D P F+     F  +    +  + A +      F      +   +P 
Sbjct: 61  ITNLTGITNEMVDDAPDFAIAMDRFIAWGLSADVIY-AWSENDLRQFNRERKLKSYNNPD 119

Query: 119 DP---SRIID-TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                S+  D     AR      R  L+      G     +  H AL D+   ++V++
Sbjct: 120 AQKLASKWKDFQKEFARMLGTRRRLALSDAVFYLGEDFQGKE-HDALWDARNTAEVFV 176


>gi|258647163|ref|ZP_05734632.1| exonuclease [Prevotella tannerae ATCC 51259]
 gi|260853133|gb|EEX73002.1| exonuclease [Prevotella tannerae ATCC 51259]
          Length = 163

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   +     +  IG V +    + + +F   + P          ++HG+   
Sbjct: 4   FAAIDFETA--NQARSSVCSIGLVVVRGGEQVD-SFYALIRPEPNYYCYWNSRIHGLRQS 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             ++ P FS +++E       +    +AHN +FD G + A  Q    D  D    +DTL+
Sbjct: 61  DTENAPVFSKVWTEIAPLI--EGLPLVAHNCRFDQGCLKAVFQVYQMDYPD-YTFLDTLT 117

Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSK 157
            AR   P   N  L+++    G  +     
Sbjct: 118 AARHALPHLDNHQLHTVAAACGYQLEQHHH 147


>gi|255100360|ref|ZP_05329337.1| putative exonuclease [Clostridium difficile QCD-63q42]
          Length = 258

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 98/258 (37%), Gaps = 46/258 (17%)

Query: 7   MRKIVFDIETT-GLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNG-RK 54
           M  I+FD+E   G D K +           II+IGA++L        TF  ++ P   + 
Sbjct: 1   MEYIIFDLEFNQGFDKKLNKTVSNEKCPFEIIQIGAIKLDSKFNIIDTFNSYVKPTIYKD 60

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P   ++  I +    D P+F  +++ F  F + Q+         +  G +    + IN
Sbjct: 61  IHPFISRMTNIKNSDFNDSPTFPEVYNNFIKFISSQDPILCV----WGAGDLKELYRNIN 116

Query: 115 KDPLD----PSRIIDTLSIARRKH--PSSRN-DLNSLCKRYGITISHRSKHGALLDSHLL 167
              L     P   I+    A +    P+ ++  L +      +     S H AL D++  
Sbjct: 117 YHKLPSNSLPKSYINIQQHASKYFNNPAGKSIGLQNAISILELD-EKMSYHNALNDAYYT 175

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
           + V+IK+                         VP+I L    KP   R + ++  ++DK 
Sbjct: 176 AKVFIKI--------------------YNPSIVPDIYLYTSIKPKTIRYSNKKRVDYDKL 215

Query: 228 IQTLGKNAIWDRYISSNQ 245
                K  I +R ++ ++
Sbjct: 216 FDEFRK--ILNRELTKDE 231


>gi|126695985|ref|YP_001090871.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9301]
 gi|126543028|gb|ABO17270.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9301]
          Length = 259

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 81/203 (39%), Gaps = 23/203 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + ++ D ETTGLD   D +IEIG +      K   +   FL P    N+ +A  ++GI+ 
Sbjct: 37  KILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFP---VNNNKAEYVNGISA 93

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E       +    + F    +  +   +AHN +FD  +         + P    + I +L
Sbjct: 94  EVTNISQPWEDGLNFFLKLVDSSD-FIVAHNVEFDKKWFGK-----GRLPKLNKKWICSL 147

Query: 128 SIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------MMVGG 178
                    S   R  +  L   + I + +   H AL D   +S+V+ K      +++  
Sbjct: 148 EDINWSFQKSLKNRPSVTDLALSFSIPVWN--LHRALSDCFYISEVFKKCDNLEELLLKA 205

Query: 179 SQINFGFKTN---EDRFFKEEKK 198
           ++  F +K     EDR   +   
Sbjct: 206 TEPRFLYKALISYEDRSLAKNAG 228


>gi|330937561|gb|EGH41501.1| ribonuclease T [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 163

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 15/133 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV +    K       T+   + P  G      AL+  
Sbjct: 31  PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFT 90

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI  D  L+   S  +  ++              + A  + HNA FD+GF+NA + R  +
Sbjct: 91  GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 150

Query: 114 NKDPLDPSRIIDT 126
            ++P  P    DT
Sbjct: 151 KRNPFHPFSSFDT 163


>gi|311111764|ref|YP_003982986.1| DNA polymerase III subunit epsilon [Rothia dentocariosa ATCC 17931]
 gi|310943258|gb|ADP39552.1| DNA polymerase III subunit epsilon [Rothia dentocariosa ATCC 17931]
          Length = 230

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 72/208 (34%), Gaps = 11/208 (5%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D    RI+    + L       R  +    P G +    A  +HGIT E+ +
Sbjct: 11  FDLETTGVDVTTARIVTASLLLLNPDGSVQRAGEWLANP-GIEIPEGAASVHGITTEYAR 69

Query: 72  -DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIID 125
                   +  E               IA NA +D   ++ E+ R N     L    I+D
Sbjct: 70  SHGQPAQQVIWEVAGAIGSLFLDGIPVIAFNAAYDFSVLHHEMLRYNIAHGELPAGHILD 129

Query: 126 TLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
              I +   P  R    L +L   + + + +   H +  D+     + +K+     +I  
Sbjct: 130 PYVIHKHVIPRKRGNRKLETLTAEHDVVLEN--AHTSKADALAAERLLVKLAERFPEIAT 187

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                     +       +     R KP
Sbjct: 188 DAAALHTHQVQWSLDQARDFQDWLRTKP 215


>gi|288929578|ref|ZP_06423422.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288329083|gb|EFC67670.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 900

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 75/238 (31%), Gaps = 46/238 (19%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGL+   D I++I AV++          F VF+    R              
Sbjct: 517 IVVFDTETTGLNVFEDDIVQIAAVKMRAGCVVEGAAFNVFIK-TERPIP----------- 564

Query: 68  EFLKDKP-------------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             L D P               +     F  +    N+  +AHNA FD   +   LQR  
Sbjct: 565 AMLGDIPNPIVAELQHNTCLPAAQALQSFMQYVG--NSMLLAHNADFDYNILRFNLQRYC 622

Query: 115 KDP---LDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                        D+L I R   P  +   L +L +   + +   + H A  D       
Sbjct: 623 PSIDLHATHPTYFDSLKIIRLLQPGLKQYKLKALLEV--LHLEGTNSHLADEDVQAT--- 677

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
            + ++    Q        + +F   ++         +R   LF          H   +
Sbjct: 678 -VSLVGYCRQKAAEMIPAQQQFLARQRVQHCAAVFRQRYAELFN--------AHYARL 726


>gi|167031397|ref|YP_001666628.1| DNA polymerase IIIsubunit epsilon [Pseudomonas putida GB-1]
 gi|166857885|gb|ABY96292.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1]
          Length = 236

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 81/192 (42%), Gaps = 10/192 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L    +K +   L +
Sbjct: 36  LREQRWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHRPLQKTNASVL-I 94

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+    L      +    +  DF    ++  +A +A FD   +   L+      L  S 
Sbjct: 95  HGLGPSALAAGCDPAEALLDLLDFMG--DSPVLAFHAPFDQRMLARALKESLGHRL-QSV 151

Query: 123 IIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +D   +A   +P +      L+    R+G+ +  R  H A  D+ + +++ + +     
Sbjct: 152 FLDVAELAPMLNPDTVLREAGLDDWVARFGLQVEER--HHASADAQVTAELALILFSQAR 209

Query: 180 QINFGFKTNEDR 191
           +         ++
Sbjct: 210 RQQLDSPLQLEQ 221


>gi|25027895|ref|NP_737949.1| DNA polymerase III subunit epsilon [Corynebacterium efficiens
           YS-314]
 gi|259506288|ref|ZP_05749190.1| DNA polymerase III, epsilon subunit [Corynebacterium efficiens
           YS-314]
 gi|23493178|dbj|BAC18149.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259166068|gb|EEW50622.1| DNA polymerase III, epsilon subunit [Corynebacterium efficiens
           YS-314]
          Length = 252

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 15/165 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETT  +    RI+    V + +   T    ++   P G +    A  +HGIT E+ +
Sbjct: 40  FDLETTAANPFEARIVTSAMVTITNAGAT--PLELLADP-GVEIPEGATAVHGITTEYAR 96

Query: 72  D-KPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID-- 125
           +       + +E      E    N   I +NA +D+  +    +R++ D      + D  
Sbjct: 97  EHGQPHEEVLAETIRRIQEGWGNNQALIVYNAPYDLTVL----RRLSGDFTIDGLVYDPY 152

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           T+   +  +   +  L  LC  Y + + +   H A  D+   + +
Sbjct: 153 TVDRIKDPYRKGKRTLADLCAHYEVQLGN--AHEATSDALAAARI 195


>gi|327312374|ref|YP_004327811.1| UvrD/REP helicase [Prevotella denticola F0289]
 gi|326945342|gb|AEA21227.1| UvrD/REP helicase [Prevotella denticola F0289]
          Length = 896

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 22/176 (12%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE------ 58
           ++   IVFD ETTGLD   D IIEI A+ +           +++   G+   P+      
Sbjct: 510 DEEEIIVFDTETTGLDVFTDDIIEIAAMRIRGGEIVGEPLDLYIE-TGKPILPKLGDKEN 568

Query: 59  -ALKLHGITDEFLKD---KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
               ++   ++        P  +     F  +   +    + HNA +D   +N  L+R  
Sbjct: 569 PMYAIYH--EKMAAGELLAP--AEGLCRFLTYIGTR--PILGHNASYDYNILNNCLRRYC 622

Query: 115 KDPL--DPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLL 167
            D +    +R  D+L + R   PS     L SL + +   ++ ++ H A+ D    
Sbjct: 623 NDTMQAHGNRCFDSLKLIRLLAPSLHSYKLESLLETF--RLTGQNSHQAIDDVGAT 676


>gi|262193953|ref|YP_003265162.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077300|gb|ACY13269.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 64/175 (36%), Gaps = 10/175 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNG-RKNSPEALKLHG 64
              +  D ETTGLD +   I+EI A+ +     +  R   + + P       PEAL+++G
Sbjct: 2   QPLVFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERALVLRVRPERLEDADPEALEVNG 61

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRI 123
                  D  S     SE       + A    HN  FD  F+ A    +   P +     
Sbjct: 62  YRRRAWADAVSLGDAMSELAPML--EGAVLAGHNVAFDRSFLEAAWDYVGHRPENLDHHA 119

Query: 124 IDTLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DT ++A     +       L  +C   G+       H A  D      V  +++
Sbjct: 120 LDTATLAFPLLMAGEIDSLSLTPVCAHLGVLRGEE--HWAFDDVRACLGVARRLL 172


>gi|162147891|ref|YP_001602352.1| exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542508|ref|YP_002274737.1| Exonuclease RNase T and DNA polymerase III [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786468|emb|CAP56050.1| putative exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209530185|gb|ACI50122.1| Exonuclease RNase T and DNA polymerase III [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 269

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 87/235 (37%), Gaps = 44/235 (18%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-------KNSPEALKLH 63
           V D+ET+G ++ +  I+EIG  ++      + T+     P G          +P+ + +H
Sbjct: 18  VIDLETSGRNAADGGIVEIGWQDV--ARDADGTW-ALAGPPGARLTHPGGPITPQTMAIH 74

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            ITD  ++D P F+ I  +      ++ A   AH A F+ G+I   L       L     
Sbjct: 75  HITDAHVRDAPPFAEIAPDIL-HPADRPAAMAAHRASFEQGWIRGSLPPALTTGLH---W 130

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKR---YGITIS-HRSKHGALLDSHLLSDVYIKMM--- 175
           I T   A R  P    +    L       G+  +     H A  D+++ +     M+   
Sbjct: 131 ICTYKCALRLWPDEPGHSNQGLRHSRRPAGLERALGDPPHRAGPDAYVTAHHLRDMLALA 190

Query: 176 ----------------------VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
                                 + G QI      + DR   E+++  P+++   R
Sbjct: 191 TVEQLLRWSREPALLTRVPHGPLRGRQIRNLATGDLDRLLAEDRRRGPDLAFTLR 245


>gi|269120725|ref|YP_003308902.1| exonuclease RNase T and DNA polymerase III [Sebaldella termitidis
           ATCC 33386]
 gi|268614603|gb|ACZ08971.1| Exonuclease RNase T and DNA polymerase III [Sebaldella termitidis
           ATCC 33386]
          Length = 195

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 19/180 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE------LLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            + FD+ET G       ++ I A++      +  + K     + +    G   +  A+ +
Sbjct: 5   IVFFDVETNG--KVGSSVLSISAIKVNFNGEIQKWEKVGEYDRFYFRNPGEAINMGAINV 62

Query: 63  HGITDEFLKDKPS-------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           +G+TD+ L+ K         F      F+ F  +  A ++AHN KFD  FI   L+    
Sbjct: 63  NGLTDDVLEKKREGTIYPVHFKDDIESFYSFCQDT-AHYVAHNIKFDRSFIPFMLKNQFD 121

Query: 116 DPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             L+   I+   +     + + +   LN   + Y I     S H +L D  +   V+ KM
Sbjct: 122 TMLENVEIVK--AGINEYYGTYKWPKLNECARFYNIPFDDSSLHESLYDVLITFRVFYKM 179


>gi|295094549|emb|CBK83640.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Coprococcus sp. ART55/1]
          Length = 216

 Score = 89.5 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 16/178 (8%)

Query: 7   MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  +  D E   +DS+           IIEIGAV+L +      +F+ ++ P     +  
Sbjct: 1   MIYVFVDFEMNMIDSEYKKEKKICKSEIIEIGAVKLDEDYNEIDSFKSYVKPAYGTMASR 60

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN--AELQRINKD 116
            +KL GITD+ ++D PS++     F ++  + +  + A  ++ D+  +   A L+     
Sbjct: 61  IIKLTGITDDMVEDAPSYAFAMGSFIEWCADADVIY-AW-SENDLRQLRKEARLKEYTHP 118

Query: 117 PLDP--SRIID-TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            L+   SR  D     A+    S R  L+      G      ++H AL D+   ++V+
Sbjct: 119 GLESIISRWKDFQKEYAKLIGTSRRISLSDAVFYLG-ENFQGAEHDALWDARNTAEVF 175


>gi|255576154|ref|XP_002528971.1| exonuclease, putative [Ricinus communis]
 gi|223531561|gb|EEF33390.1| exonuclease, putative [Ricinus communis]
          Length = 194

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 12/165 (7%)

Query: 9   KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSP-EALKLHG 64
            + FD+ETT  +    R  ++E GA+ +         ++   + P         + +  G
Sbjct: 15  IVFFDLETTVPNRAGGRFWVLEFGAIIVCPRKLVEIESYTTLIRPKDLSVVALRSGRSGG 74

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRI 123
           IT   + D P+F  +  + +   N +   W  HN  +FD   I      + KDP  P  +
Sbjct: 75  ITRNAVADAPAFEEVSDKIYSILNGR--IWAGHNIRRFDCIRIKEAFAELGKDPPVPVGM 132

Query: 124 IDTLSIARRKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHL 166
           ID+L +  +K      +L   +L   +G+    + KH +L D  +
Sbjct: 133 IDSLGVLSQKFGRRAGNLKMATLADYFGL---GQQKHRSLDDVRI 174


>gi|330983214|gb|EGH81317.1| ribonuclease T [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 171

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 15/137 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D+ET G +S  D ++EI AV +    K       T+   + P  G      AL+  
Sbjct: 32  PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFT 91

Query: 64  GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113
           GI  D  L+   S  +  ++              + A  + HNA FD+GF+NA + R  +
Sbjct: 92  GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151

Query: 114 NKDPLDPSRIIDTLSIA 130
            ++P  P    DT ++A
Sbjct: 152 KRNPFHPFSSFDTATLA 168


>gi|229187939|ref|ZP_04315044.1| exonuclease [Bacillus cereus BGSC 6E1]
 gi|228595536|gb|EEK53251.1| exonuclease [Bacillus cereus BGSC 6E1]
          Length = 181

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 15/170 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N+ + ++ D ETTGL  + D+IIEI  ++L      N      + P       EA  +HG
Sbjct: 21  NRDQFVILDTETTGLTLR-DQIIEICVIDLTGKILLN----SLVKPTI-NIPAEAASIHG 74

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+E + D PS+  I+ E  +         + +NA+FD+G I +     N +  +     
Sbjct: 75  ITNEKVHDAPSWIEIYKELCEV--TAGKTLLIYNAEFDLGMIESTCFANNVEFKNFKSTF 132

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                A          L+   +   +TI    KH A  D   + ++  ++
Sbjct: 133 IMKMYADYVDSKRWISLSDATE---LTI----KHRAASDCFAVLELLQQL 175


>gi|194447077|ref|YP_002039046.1| YacC [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
 gi|194358521|gb|ACF56965.1| YacC [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
          Length = 282

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 15/168 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD      +EIG  +          F+  L P       +A  +HGI+++
Sbjct: 104 PLFLDTETTGLD-NTAEALEIGLTDAAGQVV----FETRLKPTVA-IGAQAAAVHGISEQ 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            L   PS++ +  +      ++    I  NA+FD+  +       +   D L+   +   
Sbjct: 158 ALCGAPSWTDVARQLRHAIGDR--PVIIFNARFDIRILKQTAAAHSDPADWLEELTVYCA 215

Query: 127 LSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +A   + ++       L     + G+T      H A+ D+ + + V
Sbjct: 216 MELAAGYYGATYRYGTISLACAASQAGLTWEG-QAHSAIADARMTAGV 262


>gi|72381899|ref|YP_291254.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. NATL2A]
 gi|72001749|gb|AAZ57551.1| DNA polymerase III, epsilon subunit [Prochlorococcus marinus str.
           NATL2A]
          Length = 292

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D ETTGLD++ND  +E+G++     S++    Q FL P    N   A K++ I  E
Sbjct: 68  ILILDTETTGLDNENDDCLEVGSILFNVKSRSVLAQQSFLLPVEINN---AEKINNIPAE 124

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +     S     F       N   +AHN++FD  +    L+++ +        +D ++
Sbjct: 125 ITRLPQPLSEAIKYFESLVRVSN-VIVAHNSEFDKKWFG--LKKLPQIEKPWICSMDDIT 181

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +   +R  +  L   YG+ + +   H AL D   L++V+I+
Sbjct: 182 WPADRQLKTRPSVRDLALAYGVPVWN--AHRALTDCIYLAEVFIR 224


>gi|260909505|ref|ZP_05916208.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636353|gb|EEX54340.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 900

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 78/241 (32%), Gaps = 46/241 (19%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGL+   D I++I AV++        + F VF+    R              
Sbjct: 517 IVVFDTETTGLNVFEDDIVQIAAVKMRASCVVEGSAFNVFIK-TERPIP----------- 564

Query: 68  EFLKDKP-------------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             L D P               +    +F  +    ++  +AHNA FD   +   LQR  
Sbjct: 565 AMLGDIPNPIVAELQRNTCLPAAQALQDFMQYVG--DSVLLAHNADFDYNILRFNLQRYC 622

Query: 115 KDP---LDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                        D+L I R   P  +   L +L +   + +   + H A  D       
Sbjct: 623 PSIDLHATHPTYFDSLKIIRLLQPGLKQYKLKALLEV--LHLEGTNSHLADEDVQAT--- 677

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
            + ++    Q        + +F   ++         +R   LF          H   +  
Sbjct: 678 -VSLVGYCRQKAAEMIPAQQQFLARQRVQHCAAVFRQRYAELFN--------AHYAQLYR 728

Query: 231 L 231
           +
Sbjct: 729 M 729


>gi|315226729|ref|ZP_07868517.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
 gi|315120861|gb|EFT83993.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
          Length = 292

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 68/186 (36%), Gaps = 17/186 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG     D I     V               ++   G   +P A +++G TD +L
Sbjct: 66  FDTETTGACYGTDAIASASLVLRDPAAGFPGDRISQWIINPGVPMNPFASQVNGFTDAYL 125

Query: 71  KD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123
           ++       +   I          +    +A+NA FDV  ++ +L+R+    L+      
Sbjct: 126 QEHGQDQAEAIGQIAETIL-LAQSKRIPLLAYNAPFDVAMLDGDLRRLGDRNLNQQTQDL 184

Query: 124 ------IDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                 +D L + R   H   +  L      YG+   H S H A  D+    D+   M+ 
Sbjct: 185 GHELLIVDPLVLDRSVSHRKGKRTLTDTTYYYGVQ-PHGSFHDATADTIAAVDLVAPMVT 243

Query: 177 GGSQIN 182
              Q+ 
Sbjct: 244 LYPQVG 249


>gi|295102295|emb|CBK99840.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Faecalibacterium prausnitzii L2-6]
          Length = 337

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 73/189 (38%), Gaps = 9/189 (4%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFS 81
              IIEIGAV++ + +    TF + L P   R       K+ G+T E L           
Sbjct: 31  RGEIIEIGAVKIDEDANVLDTFSIHLRPRIFRCLQHHIAKVTGLTQEDLDKGEPIIQGLR 90

Query: 82  EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-- 139
            F  +    +AE+       DV  +   L   N D   P+   D   +  R++P      
Sbjct: 91  RFMKWCGP-DAEFAEWGMD-DVPVLKQNLFLCNLDESCPTVWYDLQQLFLREYPRKEGEG 148

Query: 140 -DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
             L ++  R GI +  R  H AL D+   +D+  +M+   + +   + + ED   +    
Sbjct: 149 MKLENVVTRMGIPLE-RPFHDALSDTLYTADL-CRMLDLRAGLA-AYPSEEDTLRQSLCP 205

Query: 199 TVPNISLLK 207
           T  +    +
Sbjct: 206 TPGDYRDFR 214


>gi|124023602|ref|YP_001017909.1| DNA polymerase III subunit epsilon [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963888|gb|ABM78644.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9303]
          Length = 321

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 14/167 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGLD K  + +E+GA+      +       FL P        A  ++ I  E 
Sbjct: 92  LIIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLLPVETN---AAESINRIPAEV 148

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS- 128
            +    +      F    +  +   +AHNA FD  +   +     + P      + T+  
Sbjct: 149 TRLDQPWRQGLDYFQALLDAADL-LVAHNAGFDRQWFGKD-----QLPAVSKPWLCTMED 202

Query: 129 --IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                 +   SR  +  L   YG+ +   + H AL D   L++V+ +
Sbjct: 203 IAWPVDRQLRSRPSVRDLALAYGVPVW--AAHRALTDCIYLAEVFAR 247


>gi|148927622|ref|ZP_01811085.1| Exodeoxyribonuclease I [candidate division TM7 genomosp. GTL1]
 gi|147887031|gb|EDK72536.1| Exodeoxyribonuclease I [candidate division TM7 genomosp. GTL1]
          Length = 476

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 86/236 (36%), Gaps = 31/236 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLC-PNGRKNSPE 58
           M++        +D+ET+GLD + DRI++       +D       F + +   +    SP+
Sbjct: 1   MMKDMAETFFFYDLETSGLDPRRDRIMQFAGQRTTMDLDPIGEPFNILVRLNDDVLPSPD 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A+ + GIT +   ++  + +     F +         +  N  +FD  FI   L R   D
Sbjct: 61  AVMVTGITPQKTHEEGIAEAEFIKLFHNQVCTPGTVTVGFNNIRFDDEFIRFALWRNFHD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P + +          +D + + R   P              N L  L       + H   
Sbjct: 121 PYEWAWKDGRSRWDLLDVVRMTRALRPGGIVWPVDKSDKPTNRLELLTSE--NNLEHSQA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
           H AL D + L  +  +M+       F     E  F   +KK V  +    + KP+ 
Sbjct: 179 HDALSDVYALIAI-TRMVRDKQPKLF-----EYLFSIRDKKAVTQLVNPYKPKPIV 228


>gi|163941161|ref|YP_001646045.1| exonuclease [Bacillus weihenstephanensis KBAB4]
 gi|163863358|gb|ABY44417.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           weihenstephanensis KBAB4]
          Length = 281

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 83/218 (38%), Gaps = 16/218 (7%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR----IIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP 57
            KN    IVFDIE              I++IGAV++ +   K    F   + P+    + 
Sbjct: 1   MKNATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIDVSTMKVIGEFSELVKPS-APLTR 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              KL GIT + L    +F  I  +F  F   +++ +++   + D  F++ +      + 
Sbjct: 59  HTTKLTGITKKDLIGVGNFPQIIEKFIQFIG-EDSIFVSWGKE-DYRFLSQDCTLYGVEC 116

Query: 118 LDPSR--IIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               +    D    +  A  +       L     + G+T   +  H AL D+   +++++
Sbjct: 117 PCMEKESRFDVQKFVFQAYEELFEHTPSLQFAVDQLGLTWEGKQ-HRALADAENTANIFL 175

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
           K + G   IN  +K + +    +  K         R  
Sbjct: 176 K-VYGERDINKRYKRHGELELVKNGKLTEKAKKRMRKW 212


>gi|77412699|ref|ZP_00788952.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
 gi|77161250|gb|EAO72308.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
          Length = 240

 Score = 89.5 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 20/113 (17%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP----------- 50
           +  ++   +VFD+ETTGL + N+ +I+I A ++   +   + F  F+ P           
Sbjct: 123 MNLHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDPGHPLSAFTTEL 181

Query: 51  ------NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97
                  G   S    +L GITD  ++       +  EF +F   Q    +AH
Sbjct: 182 TGITDDPGHPLSAFTTELTGITDNHVRGSKPILQVLQEFQNFC--QGTVLVAH 232


>gi|291548714|emb|CBL24976.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Ruminococcus torques L2-14]
          Length = 168

 Score = 89.1 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 13/169 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FDIE+TGLD   D I+++  +   +       F  ++     K   EA K++ I+ E 
Sbjct: 3   VFFDIESTGLDPVRDEILQLSIINENEEVL----FSDYIRLVRHKTWNEAEKINHISPEM 58

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID---- 125
           +KDK +F S   E      +Q  E IA+NA FD+ F+ A    +   P+    +ID    
Sbjct: 59  VKDKQTFESRKQEIQK-IFDQATELIAYNANFDISFLKAVGIVLPDVPIS-DPMIDFSFV 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               + +        L    + YG        H +L D      VY KM
Sbjct: 117 YREYSEKYGIFKWQKLVVAARYYGYEFD---AHDSLEDIKATKFVYDKM 162


>gi|226498878|ref|NP_001148000.1| UTP-glucose-P-uridyltransferase homolog [Zea mays]
 gi|194706488|gb|ACF87328.1| unknown [Zea mays]
 gi|195615060|gb|ACG29360.1| exonuclease [Zea mays]
          Length = 499

 Score = 89.1 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 19/174 (10%)

Query: 9   KIVFDIET-----TGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCP--NGRKNSPEAL 60
              FD+ET      G   +   ++E GA+ +         ++   + P       S  ++
Sbjct: 35  IAFFDVETSVPQRAG---QGYALLEFGAILVCPRRLVEVASYATLVRPADPASAVSAASV 91

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD 119
           + +GIT + +   P F  +    +D  N +   W  HN  +FD   I      I + P  
Sbjct: 92  RCNGITRDAVSAAPPFRDVADAVYDLLNGR--VWAGHNIVRFDSARIREAFTEIGRSPPQ 149

Query: 120 PSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           P  +IDTL +  ++    +    + SL   +G+    + +H +L D  +  +V 
Sbjct: 150 PKGMIDTLPLLTQRFGRRAGDMKMASLANYFGL---GKQRHRSLDDVRMNLEVL 200


>gi|323974622|gb|EGB69741.1| exonuclease [Escherichia coli TW10509]
          Length = 282

 Score = 89.1 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 15/168 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD      +EIG  +          F+  L P       +A  +HGI+++
Sbjct: 104 PLFLDTETTGLD-NTAEALEIGLTDAAGQVV----FETRLKPTVA-IGAQAAAVHGISEQ 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            L   PS++ +  +      ++    I  NA+FD+  +       +   D L+   +   
Sbjct: 158 ALCGAPSWTDVARQLRHAIGDR--PVIIFNARFDIRILKQTAAAHSDPADWLEEMTVYCA 215

Query: 127 LSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +A   + ++       L     + G+T      H A+ D+ + + V
Sbjct: 216 MELAAGYYGATNRYGTISLACAASQAGLTWEG-QAHSAIADARMAAGV 262


>gi|298708153|emb|CBJ30494.1| ATP-dependent DNA helicase RecG [Ectocarpus siliculosus]
          Length = 1002

 Score = 89.1 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 86/232 (37%), Gaps = 42/232 (18%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK--DKPS 75
           GL +K DR+I++ A ++L       +F  F+ P      P   ++ GIT E L       
Sbjct: 755 GLRAKEDRVIQLAA-KVLGSENPRHSFAEFVDPGAVGVPPRVREITGITPEILAANGARP 813

Query: 76  FSSIFSEFWDFF------------NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           F  ++ EF  +              E    ++AHNA+FD  F+  E+ R         + 
Sbjct: 814 FPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEEVSRCGFSRFMMGQD 873

Query: 124 ------IDTLSI------ARRK-----HPS--SRNDLNSLCKR-YGITISHRSKHGALLD 163
                 +D+L         R+K      P+      L  + +  YG  +     H A+ D
Sbjct: 874 MGVVCIVDSLRCLKESSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPD--AHNAMGD 931

Query: 164 SHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
                 V ++ ++    IN G++         +     +++ L+    +  R
Sbjct: 932 V-----VGLERILSAPGINEGWRGVASSHPSCQIPVPRSLAELQAATNIAAR 978


>gi|325280210|ref|YP_004252752.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
 gi|324312019|gb|ADY32572.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
          Length = 169

 Score = 89.1 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 56/148 (37%), Gaps = 7/148 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +    D ET   + +   +  +G V +++       F   + P     S     +HG++ 
Sbjct: 3   KFAAIDFETA--NWQQTSVCSVGIV-VMNRGVIEDRFYSLIHPAPNFYSRRNTAIHGLSR 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E  ++  +F +++ E       +    +AHN+ FD G + A  +    D         T 
Sbjct: 60  EDTEEALAFPTVWREIAPMI--EGIPLVAHNSMFDEGCLKAVFRLYEMDY-PGYSFYCTY 116

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154
            ++R+         L+++    G  + +
Sbjct: 117 RLSRKLFKGLENYQLHTVSSFCGYDLKN 144


>gi|297797093|ref|XP_002866431.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312266|gb|EFH42690.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 484

 Score = 89.1 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 86/218 (39%), Gaps = 21/218 (9%)

Query: 2   IRKNKMRKIVFDIETT-----GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKN 55
             +++     FD+ETT     G   +   I+E G++ +        R + V + P     
Sbjct: 6   TPEDRSEIAFFDVETTIPFRAG---QGYAILEFGSILVCPKKLVELRNYSVLVRPANLNL 62

Query: 56  S-PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI 113
             P ++K +GI  E ++   +F+ I    +D  + +   W  HN  KFD   I+     I
Sbjct: 63  ITPRSVKCNGIKREDVESAATFADIADTVYDILHGR--IWAGHNILKFDCPRISEAFAEI 120

Query: 114 NKDPLDPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +DP +P   ID+L++  ++    +    + +L   +G+       H +L D  +  +V 
Sbjct: 121 GRDPPEPKGTIDSLALLTQRFGRRAGDMKMATLASYFGLGN---QTHRSLDDVRMNLEVL 177

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
                  + +       ++        T P  S  +R 
Sbjct: 178 KYC---ATVLFLESSLPDELIENSVTTTTPETSSRRRR 212


>gi|297733948|emb|CBI15195.3| unnamed protein product [Vitis vinifera]
          Length = 447

 Score = 89.1 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 71/175 (40%), Gaps = 22/175 (12%)

Query: 9   KIVFDIETT-------GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNG-RKNSPEA 59
              FD+ETT       G       I+E GA+ +         ++   + P+     S  +
Sbjct: 10  IAFFDVETTVPTRVGQGF-----AILEFGAILVCPRKLVELESYSTLVRPHDLSLVSSLS 64

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL 118
           ++ +GIT + +   P+F  I    +D  + +   W  HN  +FD   I      I +   
Sbjct: 65  VRCNGITRDAVVSAPNFRDIADRVYDILHGR--IWAGHNILRFDCARIREAFAEIGRPAP 122

Query: 119 DPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +P   ID+L++  ++    +    + +L   +G+    +  H +L D  +  +V 
Sbjct: 123 EPKGSIDSLALLTQRFGRRAGDMKMATLATYFGL---GQQTHRSLDDVRMNLEVL 174


>gi|225457353|ref|XP_002281793.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 497

 Score = 89.1 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 71/175 (40%), Gaps = 22/175 (12%)

Query: 9   KIVFDIETT-------GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNG-RKNSPEA 59
              FD+ETT       G       I+E GA+ +         ++   + P+     S  +
Sbjct: 10  IAFFDVETTVPTRVGQGF-----AILEFGAILVCPRKLVELESYSTLVRPHDLSLVSSLS 64

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL 118
           ++ +GIT + +   P+F  I    +D  + +   W  HN  +FD   I      I +   
Sbjct: 65  VRCNGITRDAVVSAPNFRDIADRVYDILHGR--IWAGHNILRFDCARIREAFAEIGRPAP 122

Query: 119 DPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +P   ID+L++  ++    +    + +L   +G+    +  H +L D  +  +V 
Sbjct: 123 EPKGSIDSLALLTQRFGRRAGDMKMATLATYFGL---GQQTHRSLDDVRMNLEVL 174


>gi|147817752|emb|CAN66660.1| hypothetical protein VITISV_031720 [Vitis vinifera]
          Length = 535

 Score = 89.1 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 71/175 (40%), Gaps = 22/175 (12%)

Query: 9   KIVFDIETT-------GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNG-RKNSPEA 59
              FD+ETT       G       I+E GA+ +         ++   + P+     S  +
Sbjct: 10  IAFFDVETTVPTRVGQGF-----AILEFGAILVCPRKLVELESYSTLVRPHDLSLVSSLS 64

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL 118
           ++ +GIT + +   P+F  I    +D  + +   W  HN  +FD   I      I +   
Sbjct: 65  VRCNGITRDAVVSAPNFRDIADRVYDILHGR--IWAGHNILRFDCARIREAFAEIGRPAP 122

Query: 119 DPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +P   ID+L++  ++    +    + +L   +G+    +  H +L D  +  +V 
Sbjct: 123 EPKGSIDSLALLTQRFGRRAGDMKMATLATYFGL---GQQTHRSLDDVRMNLEVL 174


>gi|333030386|ref|ZP_08458447.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
 gi|332740983|gb|EGJ71465.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
          Length = 279

 Score = 89.1 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 14/169 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   I  D+ET    +K   I +IG   +LD     +     + P           +H
Sbjct: 1   MDRYDFIAIDVETA-TSAKPRFICQIGLAYVLDGEIVKKE-SYLVQPPHNHIEYRNTMIH 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI +      P+   ++ +    F+ +  + +AHNAKFD   I   L    + P +    
Sbjct: 59  GIYESDTAQAPTLPQVWEKI--GFDLRYNQLVAHNAKFDEAVIAENLF-HFRIPNNLRSF 115

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I T       H      L  LC  Y I  ++   H A  D+   +  YI
Sbjct: 116 ICTYE---LLHLG----LEDLCYAYQIAYTNH--HDACFDAACCAQFYI 155


>gi|255324551|ref|ZP_05365668.1| DNA polymerase III subunit epsilon [Corynebacterium
           tuberculostearicum SK141]
 gi|255298457|gb|EET77757.1| DNA polymerase III subunit epsilon [Corynebacterium
           tuberculostearicum SK141]
          Length = 223

 Score = 89.1 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 15/163 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +  R + FD+ETT  + K  RI+    V  +D     +     L   G +   EA  
Sbjct: 1   MNFDASRMLAFDLETTSANPKEARIVTSALVR-IDGRDVQKV--EHLADPGIEIPQEATN 57

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGIT E    +      +  +  +      E     I +NA FD+  + +    +  D 
Sbjct: 58  VHGITTEKARAEGRPHEEVLKDTVEAIKAAWEDGLTLIVYNAAFDLTVLRS----LTGDF 113

Query: 118 LDPSRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKH 158
                + D   I R   K    +  L ++C+ YG+ + +   H
Sbjct: 114 TVTGPVYDPYVIDRVSDKWRKGKRTLGAVCEHYGVELGN--AH 154


>gi|254430147|ref|ZP_05043850.1| exonuclease [Cyanobium sp. PCC 7001]
 gi|197624600|gb|EDY37159.1| exonuclease [Cyanobium sp. PCC 7001]
          Length = 292

 Score = 89.1 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 79/228 (34%), Gaps = 22/228 (9%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
               ++ D ETTGLD + D  +E+GA+   +            L    R+N  EA  ++G
Sbjct: 62  PQTLLILDTETTGLDPEQDHCLEVGAILFHVPSRAVLSQISFLL--PVRENPAEA--ING 117

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I     +    +    S F     + +A   AHNA FD  +         + P   +  I
Sbjct: 118 IAAATTRLPQPWRQGLSCFEAMAADADAVL-AHNAAFDRQWFGR-----GELPALGAPWI 171

Query: 125 DTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------MM 175
            ++   R    +       +  L   YG+ +   + H AL D   L+ V  +      ++
Sbjct: 172 CSMEDIRWPAERGLRPNPSVRDLALAYGVPVW--AAHRALTDCIYLAQVLQRCEELEALL 229

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           V   +    F+       + + K                R++  E+  
Sbjct: 230 VVAREPRRLFRAQLSYAERHKAKQAGFRWNDPVPGAWSRRLSAREVSA 277


>gi|297559294|ref|YP_003678268.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296843742|gb|ADH65762.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 243

 Score = 89.1 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 9/163 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +      FD E+TGLD  NDRI+      +   ++T       + P G     EA  
Sbjct: 11  MTWHTRPMAAFDTESTGLDLANDRIVTAALWRIDPAARTKEVTTWLIDP-GIDIPQEATD 69

Query: 62  LHGITDEFLKDKP-SFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRI--NK 115
           +H IT E  ++     +    E     +         + +NA +D+G ++AEL+R     
Sbjct: 70  IHHITTEHAREHGRPAAEAVPEIGAALEKAAADGVPVVVYNAPYDLGLLSAELRRHDAGA 129

Query: 116 DPLDPSRIIDTLSIARRK--HPSSRNDLNSLCKRYGITISHRS 156
                 R++D L I +R          L  +C  +G+ +    
Sbjct: 130 RFDGTLRVLDPLVIDKRFDTFRRGSRKLVDVCAHHGVRLDAEQ 172


>gi|322391860|ref|ZP_08065325.1| DNA polymerase III, epsilon subunit [Streptococcus peroris ATCC
           700780]
 gi|321145340|gb|EFX40736.1| DNA polymerase III, epsilon subunit [Streptococcus peroris ATCC
           700780]
          Length = 196

 Score = 89.1 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 13/171 (7%)

Query: 9   KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            I FD+E    +   ++  +I++ AV   D  +    F  ++             L GIT
Sbjct: 7   YISFDLE---FNKHQEKTHLIQVSAVHFKDGEEVG-AFDSYVY-TDVPLKSFINGLTGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIID 125
            E LKD P    +  +F +F    N   + +NA   D+  +        +  L       
Sbjct: 62  SETLKDAPKVEEVLQKFQEFIG--NLPLVGYNAAKSDLPILQEYGLDYREQYLVDLYNEA 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
               +   H  +   L ++    G        H +L D+ + + VY   + 
Sbjct: 120 LERRSSDLHGIANLKLQTVASFLGFK---GQSHNSLEDARMTAQVYEAFLE 167


>gi|240169372|ref|ZP_04748031.1| hypothetical protein MkanA1_08668 [Mycobacterium kansasii ATCC
           12478]
          Length = 1746

 Score = 88.7 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 71/226 (31%), Gaps = 27/226 (11%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R    R  V DIETTGLDS  D + E+  V  LD +              R N     + 
Sbjct: 98  RAAADRIAVLDIETTGLDSAADFVCELALV-GLDGTPLANIMVQLPAGVARPNESFGAEF 156

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
                                     E +   I HN  +FD  F+    QR   DP    
Sbjct: 157 ------------PLDDALRLLEAHLAEIDLV-IGHNLLEFDRPFLEKAAQRAGVDPPHLP 203

Query: 122 RIIDTLSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG-- 178
             +D+L +A           L  L  ++ I   H+  H AL D+   + V   M+     
Sbjct: 204 SCVDSLHLATLVDVAMPNRSLADLTHQFNIV--HQEPHRALADATATAGVVRAMLDAIDV 261

Query: 179 ----SQINFGFKTNEDRFFKEEKK---TVPNISLLKRDKPLFTRIT 217
                Q+  G     D             P++S+L R        +
Sbjct: 262 NEPSWQLAIGVLEAFDHPLMSLLPQLTATPDLSMLTRPPDPLLIPS 307


>gi|298485963|ref|ZP_07004037.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159440|gb|EFI00487.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 244

 Score = 88.7 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 72/203 (35%), Gaps = 34/203 (16%)

Query: 4   KNKMRKIV--FDIETTGL--------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53
           +N+M +++  +D ETTGL        D +   +++I  +      +   +F+  + P G 
Sbjct: 37  ENQMSQLIAFYDTETTGLPRFKDPSDDPRQPHLVDICILLYTPQGELVDSFEAMIKPEGW 96

Query: 54  KNSPEALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
               E   +HGIT E  L+           F   + +     +AHN  FD   +   ++R
Sbjct: 97  TIPDEVAAIHGITTEMALEQGIPELEALGGFLRVYEQAGLR-VAHNVSFDDRIMRIAIKR 155

Query: 113 INKD----PLDPSRIIDTLSIAR---RKHPSSR-----------NDLNSLCKRYGITISH 154
              +             T   ++   +  P+++             + ++ +      + 
Sbjct: 156 FIGEQAANEFKAMPNYCTCQSSKNIVKCPPTAKMIAAGFGRPGMYKVPTVAEALR-HFTG 214

Query: 155 RSK---HGALLDSHLLSDVYIKM 174
                 H A  D+   + +Y  M
Sbjct: 215 EELVGGHRARPDTEACARIYFAM 237


>gi|294506709|ref|YP_003570767.1| DNA polymerase III, epsilon chain [Salinibacter ruber M8]
 gi|294343037|emb|CBH23815.1| DNA polymerase III, epsilon chain [Salinibacter ruber M8]
          Length = 211

 Score = 88.7 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 55/168 (32%), Gaps = 13/168 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTG   + D +IE+G V               + P     +  A ++HGITDE 
Sbjct: 42  VFLDTETTGSGPQ-DAVIELGVVAAQGEVL----LHTLVAP-LAPVTRGARRVHGITDEE 95

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D P F ++         +    W      +D   +                   T   
Sbjct: 96  LADAPPFPTVADRLDTVLADAECVWT-FGPTYDRRMLLQTAALAECPETHRRIQDSTWRD 154

Query: 130 -----ARRKHPSSRNDLNSLCKRYGITISHR-SKHGALLDSHLLSDVY 171
                 R    + R  L    KR  ++I      H AL D+ L   V+
Sbjct: 155 LQPDATRVLGDAERVALTDAAKRLDVSIPTEGHHHRALYDAKLARRVW 202


>gi|324115837|gb|EGC09771.1| exonuclease [Escherichia coli E1167]
          Length = 285

 Score = 88.7 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 15/168 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD+     +EIG             F+  L P       +A  +HGI+++
Sbjct: 104 PLFLDTETTGLDNTT-EALEIGLTNASGQVV----FETRLKPTVA-IGAQAAAVHGISEQ 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN--AELQRINKDPLDPSRIIDT 126
            L   P ++ +  +       +    I  NA+FD+  +   A   R   D L+   +   
Sbjct: 158 ALCGAPLWTDVARQLRHAIGGR--PVIIFNARFDIRILKQTAAAHRDPADWLEEMTVYCA 215

Query: 127 LSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +A   +  +       L S   + G+T      H A+ D+ + + V
Sbjct: 216 MELAAGYYGVTNRYGTISLASAASQAGLTWEGL-AHSAIADARMTAGV 262


>gi|306835906|ref|ZP_07468899.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49726]
 gi|304568180|gb|EFM43752.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49726]
          Length = 233

 Score = 88.7 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 15/163 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +  R + FD+ETT  + K+ RI+    V  +D     +     L   G +    A  
Sbjct: 11  MNFDASRMLAFDLETTSANPKDARIVTSALVR-IDGRDVQKV--EHLADPGIEIPQAATD 67

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGIT E    +      +  +  D      E     I +NA FD+  + +    +  D 
Sbjct: 68  VHGITTEKAQAEGRPHEEVLKDTVDAIKSAWEDGLTLIVYNAAFDLTVLRS----LTGDF 123

Query: 118 LDPSRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKH 158
                + D   I R   K    +  L ++C+ YG+ + +   H
Sbjct: 124 TVTGPVFDPYVIDRVSDKWRKGKRTLGAVCEHYGVELGN--AH 164


>gi|254293981|ref|YP_003060004.1| exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC
           49814]
 gi|254042512|gb|ACT59307.1| Exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC
           49814]
          Length = 298

 Score = 88.7 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 59/169 (34%), Gaps = 17/169 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKT--NRTFQVFLCPNGRKNSPEALKL 62
           R ++ D ETTGLD +   +IEI  V      +       +    F  P     S E  KL
Sbjct: 41  RGLLIDTETTGLDYREAELIEIALVPFEYSTEGKLVTFGKALDQFQQPKS-PISEEITKL 99

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT+E +  +               E +   IAHNA FD  F     +R+         
Sbjct: 100 TGITNEMVAGQ-KID--IPAVEQLIKESDL-IIAHNAAFDRPF----AERLTPAFKAKPW 151

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               + I  ++       L+ L   +G    +   H A +D      + 
Sbjct: 152 ACSLVDIDWKEEGYESPKLSFLAMEHGF---YYKAHRADIDCWATIKLL 197


>gi|227548242|ref|ZP_03978291.1| DNA polymerase III epsilon subunit (exonuclease) [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079665|gb|EEI17628.1| DNA polymerase III epsilon subunit (exonuclease) [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 189

 Score = 88.7 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 9/164 (5%)

Query: 9   KIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ET   L   +    ++  ++ +           +L P       +   +HGI  
Sbjct: 18  FVTVDFETANRLSPASA--CQVALIK-VAGDAVVDQLVTYLRPPEEYIRFDFTHIHGIER 74

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++  P++  I  +      E      AHNA FD     A L         P++   T 
Sbjct: 75  DTVEHSPTWYDIADDVHALVGE--LPVWAHNAPFDAAVWRA-LDAYYFTGTFPAQFYCTC 131

Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             ARR  P  R   L ++   Y         H A  D+   + +
Sbjct: 132 RTARRLIPGLRDYRLPTVAA-YCAPTFDLVHHTADSDALACAHI 174


>gi|124025389|ref|YP_001014505.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. NATL1A]
 gi|123960457|gb|ABM75240.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. NATL1A]
          Length = 292

 Score = 88.7 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 8/165 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D ETTGLD++ND  +E+G++     S++    Q FL P    N   A K++ I  E
Sbjct: 68  ILILDTETTGLDNENDDCLEVGSILFNVKSRSVLAQQSFLLPVEINN---AEKINNIPAE 124

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +     S     F       N   +AHNA+FD  +    L+++ +        +D ++
Sbjct: 125 ITRLPQPLSEAIKYFESLVRVSN-VIVAHNAEFDKKWFG--LKKLPQIEKPWICSMDDIT 181

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               +   +R  +  L   YG+ + +   H AL D   L++V+I+
Sbjct: 182 WPADRQLKTRPSVRDLALAYGVPVWN--AHRALTDCIYLAEVFIR 224


>gi|262194125|ref|YP_003265334.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077472|gb|ACY13441.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 88.7 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 64/175 (36%), Gaps = 10/175 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNG-RKNSPEALKLHG 64
              +  D ETTGLD +   I+EI A+ +     +  R   + + P       PEAL+++G
Sbjct: 2   QPLVFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERALVLRVRPERLEDADPEALEVNG 61

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRI 123
                  D  S     +E       + A    HN  FD  F+ A    +   P +     
Sbjct: 62  YRRRAWADAVSLGDAMAELAPML--EGAVLAGHNVAFDRRFLEAAWDYVGHRPENLDHHA 119

Query: 124 IDTLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DT ++A     +       L  +C   G+       H A  D      V  +++
Sbjct: 120 LDTAALAFPLLMAGEIDSLSLTPVCAHLGVLRGEE--HWAFDDVRACLGVARRLL 172


>gi|50954845|ref|YP_062133.1| DNA polymerase III subunit epsilon [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951327|gb|AAT89028.1| DNA polymerase III, epsilon subunit [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 227

 Score = 88.7 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 10/151 (6%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETTG+D +  R++      L ++ +        L P G +   EA  +HGI+ E  
Sbjct: 9   VFDLETTGVDVETARVVTAHIGLLDEHGEIVHGRSWLLDP-GVEIPAEASAVHGISTELA 67

Query: 71  KDKPS-----FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRII 124
           ++K        + I  +    F  ++   +A+NA +D   ++ E +R   +PL  P  II
Sbjct: 68  REKGMDAARGIAGIVDQLRRLF-ARSVPVVAYNAPYDFSLLDREARRHGIEPLHSPGPII 126

Query: 125 DTLSIAR--RKHPSSRNDLNSLCKRYGITIS 153
           D L I R   K    +  L      YGI ++
Sbjct: 127 DPLVIDRAVDKFRPGKRTLTVTADHYGIVLT 157


>gi|114562985|ref|YP_750498.1| DNA polymerase III subunit epsilon [Shewanella frigidimarina NCIMB
           400]
 gi|114334278|gb|ABI71660.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
           frigidimarina NCIMB 400]
          Length = 238

 Score = 88.7 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 76/202 (37%), Gaps = 27/202 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL 60
              + +  +  D ETTGLDS+ + II IG V          +  + +L P   K   +++
Sbjct: 41  TPLSDIEFVALDFETTGLDSQKNSIISIGLVPFTLQRIFCRKAKKWYLNPKD-KLQEDSI 99

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HGIT   L+D P    I               + H    +  F++  L R+  +    
Sbjct: 100 IIHGITHSDLQDAPDLLLILE--QLLNELAGKVVVVHYRHIERDFLDHTL-RMLINEGIV 156

Query: 121 SRIIDTLS--------------IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +IDT+                  ++  +    L +  +RY +     + H AL D+  
Sbjct: 157 FPVIDTMQIEANVQREKSQGLFNFFKRKRTESIRLANSRERYHLP--AYAPHDALTDAIA 214

Query: 167 LSDVYIKMMVGGSQINFGFKTN 188
            +++        +QI + F  +
Sbjct: 215 TAELL------QAQIKYHFSPD 230


>gi|240142188|ref|YP_002966698.1| putative Exonuclease [Methylobacterium extorquens AM1]
 gi|240012132|gb|ACS43357.1| putative Exonuclease [Methylobacterium extorquens AM1]
          Length = 190

 Score = 88.7 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 66/186 (35%), Gaps = 15/186 (8%)

Query: 10  IVFDIETTGL--------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
             FD ETTG           +  RI+EIG V          TF+ FL P+G     E   
Sbjct: 3   AAFDTETTGTPAPGLPLRHPRQPRIVEIGCVLYYPDGAVADTFRTFLRPDGFTIPMEMRD 62

Query: 62  LHGIT-DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           LHGIT     ++    +  F    +F        + H   FD   +  E+     DP  P
Sbjct: 63  LHGITVSAARREGLPAAEAFGRLKEFLAGAGRIAV-HFVPFDATMVAIEIAHGAPDPFGP 121

Query: 121 SRII-DTLSIARRKHPSSRN-DLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMVG 177
            R    T + A        +  L+  C   GI     R  H AL D+    D+ I +   
Sbjct: 122 GREFACTSAAAGLAVRGEGHLALDEACA--GILGRPPRRHHRALPDALDAMDLAIALERT 179

Query: 178 GSQINF 183
           G    F
Sbjct: 180 GHLHTF 185


>gi|311740580|ref|ZP_07714407.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304100|gb|EFQ80176.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 223

 Score = 88.7 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 15/163 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +  R + FD+ETT  + K  RI+    V  +D     +     L   G +   EA  
Sbjct: 1   MNFDASRMLAFDLETTSANPKEARIVTSALVR-IDGRDVQKV--EHLADPGIEIPQEATN 57

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGIT E    +      +  +  +      E     I +NA FD+  + +    +  D 
Sbjct: 58  VHGITTEKARAEGRPHEEVLKDTIEAIKAAWEDGLTLIVYNAAFDLTVLRS----LTGDF 113

Query: 118 LDPSRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKH 158
                + D   I R   K    +  L ++C+ YG+ + +   H
Sbjct: 114 TVTGPVYDPYVIDRVSDKWRKGKRTLGAVCEHYGVELGN--AH 154


>gi|225175900|ref|ZP_03729892.1| Exonuclease RNase T and DNA polymerase III [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168488|gb|EEG77290.1| Exonuclease RNase T and DNA polymerase III [Dethiobacter
           alkaliphilus AHT 1]
          Length = 198

 Score = 88.7 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 25/172 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV---ELLDYSKTNRTFQVFL--CPNGRKNSPEALKLHG 64
              D+ETTGL  + + I+E+         D  +  R    ++     G   SP A ++HG
Sbjct: 13  CFVDVETTGLSPRKEEIVELAICLFAYRRDSGEITRIVDRYVGQREPGVPVSPGAARVHG 72

Query: 65  ITDEFLKDKP----SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +    L+ K        +I     +F        +AHNA FD GF+        +     
Sbjct: 73  LRMADLRGKQLDTARIEAILHS-AEFI-------VAHNASFDRGFVARLFPVSGRK---- 120

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            + + ++S    K        L +L + + I       H A  D      + 
Sbjct: 121 -QWLCSMSGIDWKGKGFPSRGLQNLLRAHRID--AGRAHRAEDDVLATLKLL 169


>gi|23013261|ref|ZP_00053177.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 302

 Score = 88.7 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 59/173 (34%), Gaps = 25/173 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL---DYSK-----TNRTFQVFLCPNGRKNSPEALK 61
            V D+ETTGLD   D IIE+G V      D            FQ           PE  +
Sbjct: 43  AVVDVETTGLDLVKDEIIELGMVLFEFSSDGRIYRILDVVEAFQE----PTIPILPEITQ 98

Query: 62  LHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           L GIT E +       + I     +      A  IAHNA FD  F+    +R+       
Sbjct: 99  LTGITAEMVAGHSIDVAEI-----ERLIAPVALVIAHNAGFDRRFL----ERLAPGFAKK 149

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +       I           L  L  +YG+       H A  D   L ++  K
Sbjct: 150 AWACSINEIDWAAEGIGGTKLFYLLAQYGL---FHDGHRAGADCLALLEILAK 199


>gi|289547982|ref|YP_003472970.1| exonuclease RNase T and DNA polymerase III [Thermocrinis albus DSM
           14484]
 gi|289181599|gb|ADC88843.1| Exonuclease RNase T and DNA polymerase III [Thermocrinis albus DSM
           14484]
          Length = 208

 Score = 88.7 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 73/169 (43%), Gaps = 12/169 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITD 67
            +V D ET+  D K   ++ +GA+++++ +    T F V +           +K+HGIT 
Sbjct: 38  FVVLDTETS--DIKGTNLLSVGALKVVNLTLDLSTAFHVTVK--STPTDHTGIKVHGITP 93

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++       +   F  +   + +  + +    D+  IN  L+R  K P  P  +    
Sbjct: 94  HDIRQGMKEEEVCDLFLAY--AKGSVLVGYFLDLDIRAINRALRRHKKPPFCPPSLDLLD 151

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +   K       L  L   YG+ ++ R  H A+ D+++ + +++ +M 
Sbjct: 152 LLPPSK---KNIPLEELLLHYGLPVTQR--HSAIEDAYMTALLFLVLMT 195


>gi|300824605|ref|ZP_07104714.1| exonuclease [Escherichia coli MS 119-7]
 gi|300522930|gb|EFK43999.1| exonuclease [Escherichia coli MS 119-7]
          Length = 282

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 15/166 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D ETTGLD      +EIG  +          F+  L P       +A  +HGI+++ L
Sbjct: 106 FLDTETTGLD-NTAEALEIGLTDAAGQVV----FETRLKPTVA-IGAQAAAVHGISEQAL 159

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDTLS 128
              PS++ +  +      ++    I  NA+FD+  +       +   D L+   +   + 
Sbjct: 160 CGAPSWTDVARQLRHAIGDR--PVIIFNARFDIRILKQTAAAHSDPADWLEEMTVYCAME 217

Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +A   + ++       L S   + G+T      H A+ D+ + + V
Sbjct: 218 LAAGYYGATNRYGTISLASAASQAGLTWEGL-AHSAIADARMAAGV 262


>gi|15927574|ref|NP_375107.1| ATP-dependent helicase [Staphylococcus aureus subsp. aureus N315]
 gi|29028621|ref|NP_803310.1| Pol III-like ATP dependent helicase [Staphylococcus phage phi 12]
 gi|30043986|ref|NP_835521.1| probable ATP-dependent helicase [Staphylococcus phage phiN315]
 gi|87161004|ref|YP_494621.1| putative exonuclease [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195288|ref|YP_500092.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|118725058|ref|YP_908794.1| probable ATP-dependent helicase [Staphylococcus phage phiNM3]
 gi|151222134|ref|YP_001332956.1| phage exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161510224|ref|YP_001575883.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253315032|ref|ZP_04838245.1| putative exonuclease [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253729784|ref|ZP_04863949.1| DNA polymerase III epsilon subunit family exonuclease
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|258413674|ref|ZP_05681948.1| phage exonuclease [Staphylococcus aureus A9763]
 gi|258425109|ref|ZP_05687979.1| phage exonuclease [Staphylococcus aureus A9635]
 gi|258434316|ref|ZP_05688717.1| exonuclease family protein [Staphylococcus aureus A9299]
 gi|258447837|ref|ZP_05695972.1| phage exonuclease [Staphylococcus aureus A6224]
 gi|258452362|ref|ZP_05700372.1| ATP-dependent helicase [Staphylococcus aureus A5948]
 gi|282917349|ref|ZP_06325104.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus D139]
 gi|282928799|ref|ZP_06336392.1| exodeoxyribonuclease [Staphylococcus aureus A10102]
 gi|283771164|ref|ZP_06344055.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus H19]
 gi|294849552|ref|ZP_06790294.1| exodeoxyribonuclease [Staphylococcus aureus A9754]
 gi|295428583|ref|ZP_06821210.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297589943|ref|ZP_06948583.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|13701793|dbj|BAB43086.1| probable ATP-dependent helicase [Staphylococcus aureus subsp.
           aureus N315]
 gi|18920545|gb|AAL82285.1| Pol III-like ATP dependent helicase [Staphylococcus phage phi 12]
 gi|87126978|gb|ABD21492.1| putative exonuclease [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202846|gb|ABD30656.1| exonuclease family [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|104641823|gb|ABF73165.1| probable ATP-dependent helicase [Staphylococcus phage phiNM3]
 gi|150374934|dbj|BAF68194.1| phage exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160369033|gb|ABX30004.1| possible exodeoxyribonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253726519|gb|EES95248.1| DNA polymerase III epsilon subunit family exonuclease
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|257839627|gb|EEV64097.1| phage exonuclease [Staphylococcus aureus A9763]
 gi|257844692|gb|EEV68736.1| phage exonuclease [Staphylococcus aureus A9635]
 gi|257849264|gb|EEV73245.1| exonuclease family protein [Staphylococcus aureus A9299]
 gi|257858934|gb|EEV81802.1| phage exonuclease [Staphylococcus aureus A6224]
 gi|257859949|gb|EEV82787.1| ATP-dependent helicase [Staphylococcus aureus A5948]
 gi|269941473|emb|CBI49870.1| putative phage exonuclease [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282318976|gb|EFB49331.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus D139]
 gi|282589534|gb|EFB94622.1| exodeoxyribonuclease [Staphylococcus aureus A10102]
 gi|283459758|gb|EFC06849.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus H19]
 gi|285817684|gb|ADC38171.1| Pol III-like ATP dependent helicase, phage associated
           [Staphylococcus phage phiN315]
 gi|294823689|gb|EFG40116.1| exodeoxyribonuclease [Staphylococcus aureus A9754]
 gi|295127565|gb|EFG57204.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297577071|gb|EFH95785.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|312830370|emb|CBX35212.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315196784|gb|EFU27129.1| possible exodeoxyribonuclease [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320143661|gb|EFW35439.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329724440|gb|EGG60950.1| exonuclease [Staphylococcus aureus subsp. aureus 21189]
          Length = 310

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 7/166 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ET  ++   +   E+ AV L+      + +  ++ P   + + +  K+H I ++
Sbjct: 6   IAVLDFET--MNEHMNSPCEV-AVSLIKDLSIVKVYSSYINPPNNRYNLKNAKIHKIPED 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P +  I+ E   +  +++   IAHNA FD+  +       +  P+     +D+++
Sbjct: 63  VILKAPKYPDIYQEIL-YLLKESHLIIAHNALFDISVLKNTNNYYDL-PVPNFMYVDSIN 120

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           I R  H  S   L +LC  Y I       H A  D   LS + I +
Sbjct: 121 IFRSFHAISSFKLENLCSLYDID--KEKLHSAKFDVLALSKMLISL 164


>gi|49484243|ref|YP_041467.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242372|emb|CAG41084.1| putative exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 310

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 7/166 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D ET  ++   +   E+ AV L+      + +  ++ P   + + +  K+H I ++
Sbjct: 6   IAVLDFET--MNEHMNSPCEV-AVSLIKDLSIVKVYSSYINPPNNRYNLKNAKIHKIPED 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P +  I+ E   +  +++   IAHNA FD+  +       +  P+     +D+++
Sbjct: 63  VILKAPKYPDIYQEIL-YLLKESHLIIAHNALFDISVLKNTNNYYDL-PVPNFMYVDSIN 120

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           I R  H  S   L +LC  Y I       H A  D   LS + I +
Sbjct: 121 IFRSFHAISSFKLENLCSLYDID--KEKLHSAKFDVLALSKMLISL 164


>gi|262194198|ref|YP_003265407.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077545|gb|ACY13514.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 64/175 (36%), Gaps = 10/175 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNG-RKNSPEALKLHG 64
              +  D ETTGLD +   I+EI A+ +   +    R   + + P       PEAL+++G
Sbjct: 2   QPLVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVNG 61

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRI 123
                  D  S     +E       + A    HN  FD  F+ A    +   P +     
Sbjct: 62  YRRRAWADAVSLGDAMAELAPML--EGAVLAGHNVAFDRRFLEAAWDYVGHRPENLDHHA 119

Query: 124 IDTLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DT ++A     +       L  +C   G+       H A  D      V  +++
Sbjct: 120 LDTATLAFPLLMAGEIDSLSLTPVCAHLGVLRGEE--HWAFDDVRACLGVARRLL 172


>gi|189402589|ref|ZP_02783395.2| YacC [Escherichia coli O157:H7 str. EC4401]
 gi|189354799|gb|EDU73218.1| YacC [Escherichia coli O157:H7 str. EC4401]
          Length = 191

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 15/168 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD      +EIG  +          F+  L P       +A  +HGI+++
Sbjct: 13  PLFLDTETTGLD-NTAEALEIGLTDASGQVV----FETRLKPTVA-IGAQAAAVHGISEQ 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            L   PS++ +  +      ++    I  NA+FD+  +       +   D L+   +   
Sbjct: 67  ALCGAPSWTDVARQLRHAIGDR--PVIIFNARFDIRILKQTAAAHSDPADWLEELSVYCA 124

Query: 127 LSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +A   + ++       L     + G+T      H A+ D+ + + V
Sbjct: 125 MELAAGYYGATNRYGTISLACAASQAGLTWEG-QAHSAIADARMTAGV 171


>gi|260577531|ref|ZP_05845471.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium ATCC
           43734]
 gi|258604335|gb|EEW17572.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium ATCC
           43734]
          Length = 214

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 11/151 (7%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D K  RI+    V +    + +      L   G +   +A  +HGIT E+ +
Sbjct: 4   FDLETTGVDPKTARIVTSALVTIKGRERNDIEM---LADPGVEIPQQASDVHGITTEYAR 60

Query: 72  D-KPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +       + ++  +         A  I +NA +D+  + A       D       +  +
Sbjct: 61  EHGQDHGEVLAKTIEGIRAAWRSGATLIVYNAAYDLSVLRALEPSFTVDGPVFDPYV--V 118

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
             A+ ++   +  L S+C+ YG+T+ +   H
Sbjct: 119 DRAKDQYRKGKRTLESVCQHYGVTLDN--AH 147


>gi|33862659|ref|NP_894219.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9313]
 gi|33634575|emb|CAE20561.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9313]
          Length = 309

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 14/167 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGLD K  + +E+GA+      +       FL P        A  ++ I  E 
Sbjct: 80  LIIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLLPVETN---AAESINRIPAEV 136

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS- 128
            +    +      F    +  +   +AHNA FD  +   +     + P      + T+  
Sbjct: 137 TRLDQPWRQGLDYFQALLDAADL-LVAHNAGFDRQWFGKD-----QLPAVSKPWLCTMED 190

Query: 129 --IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                 +   SR  +  L   YG+ +   + H AL D   L++V+ +
Sbjct: 191 IAWPVDRQLRSRPSVRDLALAYGVPVW--AAHRALTDCIYLAEVFAR 235


>gi|269123136|ref|YP_003305713.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus
           moniliformis DSM 12112]
 gi|268314462|gb|ACZ00836.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus
           moniliformis DSM 12112]
          Length = 426

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 87/215 (40%), Gaps = 24/215 (11%)

Query: 2   IRKNK--MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           IRKN   +  I+ D+ETTG+  KND I+++  ++++        F  ++ P    +  +A
Sbjct: 33  IRKNICILNPIILDVETTGI-RKNDEILQLSIIDIMGNVV----FDKYMKPKYVNDWDDA 87

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+H I+ E +K+K   S    +      +     I +    D+ F+    +R   + L 
Sbjct: 88  FKIHNISHEMVKNKKYISYYKKDIEKILKKHKL-IIGYEVNSDIAFL----RRAGIE-LK 141

Query: 120 PSRIIDTLSIARRKHPSS-------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            + ++D   +      +        R  L    K Y +     + H AL D       + 
Sbjct: 142 SNIVLDIAYLFSLLFENENLIDRKIRPSLLDAAKFYNLDF---NAHDALSDCIATLHCFK 198

Query: 173 KMMVGGSQ-INFGFKTNEDRFFKEEKKTVPNISLL 206
            ++V   + + F +     +F +EE K     S L
Sbjct: 199 SILVEKKEKLEFKYDVQVMKFLEEENKVEEKTSKL 233



 Score = 75.6 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 69/184 (37%), Gaps = 24/184 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+ D+ETTG+  +ND II++  +++       + F  +  P       EA K+H I  E 
Sbjct: 251 IILDLETTGI-RENDEIIQLSIIDIKG----EKLFNEYFKPINVTEWEEAYKIHNIGKEM 305

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+DK +      +  +  +  +   I +   FD   +    QR   + ++  + +D    
Sbjct: 306 LEDKLTIEEYREKIQNILDSTD-YMIGYGIDFDYKLL----QRQGFN-VEHIKKVDVSDY 359

Query: 130 ARRKHPS-------SRNDLNSLCKRYGITISHRSKHGALLDSHLL----SDVYIKMMVGG 178
            +  +          R  L      YG     R  H +L D          +Y  M+   
Sbjct: 360 FKYIYRKIFNDPKLKRPKLIECSNYYG--FKDRGFHNSLTDCFATLVSYKGIYKYMLEEL 417

Query: 179 SQIN 182
           S  N
Sbjct: 418 SDRN 421


>gi|33865550|ref|NP_897109.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8102]
 gi|33632719|emb|CAE07531.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH
           8102]
          Length = 256

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 18/169 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGLD + DR +E+GA+     +++    Q FL P        A  ++ I    
Sbjct: 28  LIIDTETTGLDPEKDRCLEVGAILFDVSTRSVLAQQSFLLPVETN---AAEPINRIPASV 84

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRIIDTL 127
            +    ++     F +     +   +AHNA FD        Q   +DPL       + ++
Sbjct: 85  TRLPQPWTGALRWFDELLTASD-VLVAHNAVFDR-------QWFGRDPLPAVSHPWLCSM 136

Query: 128 SIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              R    +   SR  +  L   YG+ +   S H AL D + L++V+ +
Sbjct: 137 EDLRWPAERQLRSRPSVRDLALAYGVPVW--SAHRALTDCNYLAEVFAR 183


>gi|167645985|ref|YP_001683648.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31]
 gi|167348415|gb|ABZ71150.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
          Length = 296

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 61/171 (35%), Gaps = 21/171 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP------NGRKNSPEALKLH 63
           +  D+ETTGLD++ D IIE+  +    Y    R ++V + P        R  S E   L 
Sbjct: 43  LFVDVETTGLDTRRDEIIELAMIPFR-YGLVGRIYEV-MEPFHGYRQPARPISAEITALT 100

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI D  ++ +    SI  E    F    A  IAHNA FD   +                 
Sbjct: 101 GIDDAMVEGQ----SIDPEAVAAFAAPAALVIAHNASFDRRLLERFS-----PVFQTKPW 151

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             ++S    K        L  L    G       +H A  D     ++  +
Sbjct: 152 ACSMSQIDWKDEGHEGVKLAYLAAGAGFFYD---RHRATNDCAAAIELLAR 199


>gi|159528144|ref|YP_001542707.1| DNA polymerase III subunit epsilon [Fluoribacter dumoffii]
 gi|159157989|dbj|BAF92678.1| DNA polymerase III subunit epsilon [Fluoribacter dumoffii]
          Length = 306

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 79/212 (37%), Gaps = 21/212 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGIT 66
           + D+ET G+D+  D IIEIG +     +          +  L   G+   PE  K+ GI 
Sbjct: 47  IIDLETMGMDATQDEIIEIGMLSFSFSNEDGILGIKHTYNELNAPGKPIPPEITKITGIR 106

Query: 67  DEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +E +  K  +++ +         +++   I HNA FD  F+  +  +  +  +       
Sbjct: 107 NEDVIGKTINWNFVLQ-----VLKESHLIICHNAGFDRNFLELQTPQDIQKQIITLPFGC 161

Query: 126 TLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           T+     ++     + L+ L  + G        H A+ D     ++ +       Q    
Sbjct: 162 TIKDIDWKERDYESSKLDYLNWKLGYFYDG---HRAINDCWATLNLLL-------QEQGA 211

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           F   ++R  K +       +   +   L  R+
Sbjct: 212 FDELKNRVRKRQTLICAENAPFDKKDLLKNRL 243


>gi|88856168|ref|ZP_01130828.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
 gi|88814487|gb|EAR24349.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
          Length = 232

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 10/159 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D +  RI+      +         +     P G +    A  +HGI+ E  +
Sbjct: 10  FDLETTGVDVETSRIVSACIALVDASGVVISRWDWLADP-GVEIPEGAAAIHGISTERAR 68

Query: 72  -DKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDT 126
            +    + + +E               + +NA +D+  ++ E +R + D L +P  +ID 
Sbjct: 69  AEGRDAAIVVAEIVQTLKVTCALGIPLVVYNAPYDLSLLDRECRRYSIDGLREPYIVIDP 128

Query: 127 LSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           L I +   ++   +  L      YG+ +     H A  D
Sbjct: 129 LVIDKAVDRYRRGKRTLEVTSGLYGVALDD--AHDAGSD 165


>gi|313896094|ref|ZP_07829648.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529365|ref|ZP_08030453.1| exonuclease [Selenomonas artemidis F0399]
 gi|312975519|gb|EFR40980.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320138331|gb|EFW30225.1| exonuclease [Selenomonas artemidis F0399]
          Length = 179

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 16/174 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFD ETTG  S +D ++ +  V+    +  +  +     P  +K  P+A K++ I+ 
Sbjct: 4   KILVFDTETTGFRS-DDEVLTLAVVDGAGKTVVDGMY----APVSKKEWPDAEKVNRISP 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D     +  +E    FN+     + +N +FD+  +            +P+R    L
Sbjct: 59  AMVADCAPILTHRAELERLFNDPETLLVGYNIEFDIRLLGQS----GIRITNPNRHDVML 114

Query: 128 SIA-RRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +  RK P +R        L    + Y         HGAL D+      Y +M
Sbjct: 115 AFSEMRKVPDARRGGYRWWKLTECAEYYRYNWGTTEAHGALADTLATLYCYDQM 168


>gi|269793338|ref|YP_003318242.1| Exonuclease RNase T and DNA polymerase III [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100973|gb|ACZ19960.1| Exonuclease RNase T and DNA polymerase III [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 280

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 14/205 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEALKLHG 64
           M     D ET   +  ++    +G V +  +          + P+   R   P  +++HG
Sbjct: 1   MDFAAIDFETA--NRFHESPCAVGVVVVRQWEIVEEA-SFLILPHRDFRFFEPMNVRVHG 57

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT   +   P F     +       Q    +AHNA+FD+  +   +   +         +
Sbjct: 58  ITPRRVLSSPEFPDALEDVISMV--QGLPLMAHNARFDLEVLMRTMALYSLGEA-RFDWV 114

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            +L +ARR     R  L S+ +  G   +H      L D+ L + V    M    ++   
Sbjct: 115 CSLRLARRAFRLRRCGLESMAEHLGFPFNHHDP---LDDARLCAKV---AMASLLELGMT 168

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRD 209
            +  +       +  +  +   +R 
Sbjct: 169 LEEAQRESVPPYRTLLSQVEDRRRR 193


>gi|293190188|ref|ZP_06608684.1| putative DNA polymerase III epsilon subunit [Actinomyces
           odontolyticus F0309]
 gi|292821004|gb|EFF79957.1| putative DNA polymerase III epsilon subunit [Actinomyces
           odontolyticus F0309]
          Length = 250

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 19/189 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY----SKTN--RTFQVFLCPNGRKNSPEALKLHGI 65
           FD ETTG+ +  DR++    V  +D     S  +       +L   G +   +A  +HGI
Sbjct: 11  FDTETTGVRALKDRLVTAALVLRIDGASYRSGVSAPDQVATWLTDPGVEIPEQATAVHGI 70

Query: 66  TDEFL-KDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLD-- 119
           T E   +D      +  E      E   +    +A NA +D+  +N EL+R      +  
Sbjct: 71  TTEQARRDGRPIEEVLHELAGSIVEHWLRGYPVVAFNATYDITLVNQELRRHRLGSFEER 130

Query: 120 ----PSRIIDTLSIARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               P  I+D L + R+       +  L  +   YG  ++    H A +D  +  DV   
Sbjct: 131 LEGAPMLIVDPLVLDRKLDRFRKGKKTLTEMAPVYG-AVASPDAHTAEVDVAMTLDVLAG 189

Query: 174 MMVGGSQIN 182
           M+    Q+ 
Sbjct: 190 MVDKYPQLA 198


>gi|262067765|ref|ZP_06027377.1| putative exonuclease [Fusobacterium periodonticum ATCC 33693]
 gi|291378491|gb|EFE86009.1| putative exonuclease [Fusobacterium periodonticum ATCC 33693]
          Length = 191

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 24/188 (12%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
           + I  D ET G++ +   +I++  +  +D  K    F  ++ P    + + +AL++ G T
Sbjct: 3   KIIFIDTETGGVNPEKATLIQLSGIIRID-KKDVEKFNFYIKPFKNSEVNEKALEVQGRT 61

Query: 67  DEFLK-DK-PSFSSIFSEFWDFFNE-------QNAEWIA-HNAKFDVGFINAELQRINKD 116
            E LK DK      ++ +F +  ++        +   +A +N +FDV  + A  QR   +
Sbjct: 62  LEELKTDKYVEEKEVYKQFINLLDKYIDKYDRTDKFIVAGYNVRFDVDILKAFFQRHGNN 121

Query: 117 PLD---PSRIIDTLSIARRKHPS------SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            L     S ++D L   R    +        N L + CK +GI +     H +L +    
Sbjct: 122 FLFSYLDSSMLDPLYSIRLLQIAEILPVLENNKLETWCKHFGIEL---KAHDSLENIEAT 178

Query: 168 SDVYIKMM 175
             +  K++
Sbjct: 179 KKLIGKLI 186


>gi|21324010|dbj|BAB98636.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
          Length = 245

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 70/181 (38%), Gaps = 11/181 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +  + + FD+ETTG++  + RI+    V +   SK     ++   P G +    A  +HG
Sbjct: 23  DTTKMLSFDLETTGVNPFDTRIVTSAMVTIT--SKGAEPIELLADP-GIEIPEAATAVHG 79

Query: 65  ITDEFLK-DKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           IT E  + +      + +E         +     I  NA +D+  +         D L  
Sbjct: 80  ITTEHARANGRPHDEVLAETISRLRAGWQAGLSVIVFNASYDLTVLRNHDPSFTIDGLVY 139

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              +  +   + ++   +  L  +C  Y + + +   H A  D+   + +  K +    +
Sbjct: 140 DPFV--IDKVKDRYRKGKRTLTDMCAHYDVQLGN--AHEATSDALAAARIAWKQVRLWPE 195

Query: 181 I 181
           +
Sbjct: 196 L 196


>gi|8134657|sp|Q9Z5X0|RNT_AZOVI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|4378828|gb|AAD19703.1| putative RNase T [Azotobacter vinelandii]
          Length = 116

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 76  FSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRI--NKDPLDPSRIIDTLSIA 130
              IF                 + HN+ FD+ F+NA + R    ++P  P    DT ++A
Sbjct: 1   LQEIFRGVRKAVKSHGCKRAILVGHNSSFDLAFLNAAVARCDIKRNPFHPFSSFDTATLA 60

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
              +   +  L   C+  GI    R  H A  D+   ++++  ++    ++ 
Sbjct: 61  GLAY--GQTVLAKACQSAGIEFDGREAHSARYDTEKTAELFCGIVNRWKEMG 110


>gi|320332661|ref|YP_004169372.1| Exonuclease RNase T and DNA polymerase III [Deinococcus
           maricopensis DSM 21211]
 gi|319753950|gb|ADV65707.1| Exonuclease RNase T and DNA polymerase III [Deinococcus
           maricopensis DSM 21211]
          Length = 183

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 21/188 (11%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +    I  D ET G+D     ++ +G V L D   T R   + +  +     PEA++++
Sbjct: 1   MSAQPIIFLDTETGGMDPAVHPLLTVGLVTLQDGEIT-RPLHLRVRHDTYTVDPEAMRVN 59

Query: 64  GI---TDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLD 119
           GI   T     +    + + +    +  E     +  HN  FD+GF+   L   ++  + 
Sbjct: 60  GIDLLTHHD--EAHPPAEVAAAIRAYAAEVGRVMLGGHNFAFDLGFLRTLLP--DRSRVF 115

Query: 120 PSRIIDT------LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--- 170
               +DT      L  A          L+ L K +GI       H AL D+   + V   
Sbjct: 116 RCGHVDTKTTAQFLIHAGILPKKVGTALDQLAKHFGIEY---QAHDALEDARTTAIVYNE 172

Query: 171 YIKMMVGG 178
           ++K++   
Sbjct: 173 FLKLVRAA 180


>gi|19552464|ref|NP_600466.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum ATCC
           13032]
 gi|62390130|ref|YP_225532.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum ATCC
           13032]
 gi|41325466|emb|CAF19946.1| putative DNA polymerase III alpha subunit, the Gram-positive type
           [Corynebacterium glutamicum ATCC 13032]
          Length = 237

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 70/181 (38%), Gaps = 11/181 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +  + + FD+ETTG++  + RI+    V +   SK     ++   P G +    A  +HG
Sbjct: 15  DTTKMLSFDLETTGVNPFDTRIVTSAMVTIT--SKGAEPIELLADP-GIEIPEAATAVHG 71

Query: 65  ITDEFLK-DKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           IT E  + +      + +E         +     I  NA +D+  +         D L  
Sbjct: 72  ITTEHARANGRPHDEVLAETISRLRAGWQAGLSVIVFNASYDLTVLRNHDPSFTIDGLVY 131

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              +  +   + ++   +  L  +C  Y + + +   H A  D+   + +  K +    +
Sbjct: 132 DPFV--IDKVKDRYRKGKRTLTDMCAHYDVQLGN--AHEATSDALAAARIAWKQVRLWPE 187

Query: 181 I 181
           +
Sbjct: 188 L 188


>gi|78779006|ref|YP_397118.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9312]
 gi|78712505|gb|ABB49682.1| DNA polymerase III, epsilon subunit [Prochlorococcus marinus str.
           MIT 9312]
          Length = 259

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 79/207 (38%), Gaps = 31/207 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFL---CPNGRKNSPEALKLH 63
           + ++ D ETTGLD   D +IEIG +   + +          L          +  + ++ 
Sbjct: 37  KILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLLPVNNNEAEHVNCISAEVT 96

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I+         +    + F    +  +   +AHN +FD  +         + P+   + 
Sbjct: 97  NISQ-------PWEDGLNFFLKLVDCSD-FIVAHNVEFDKKWFGK-----GRLPMLNKKW 143

Query: 124 IDTLS---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------M 174
           I +L     + +K   +R  +  L   + I + +   H AL D   +S+V+ K      +
Sbjct: 144 ICSLDDINWSFQKSLKTRPSVTDLALSFSIPVWN--LHRALSDCFYISEVFKKCDNLEEL 201

Query: 175 MVGGSQINFGFKTN---EDRFFKEEKK 198
           ++  ++  F +K     EDR   +   
Sbjct: 202 LLKATEPRFLYKALVSYEDRSLAKNAG 228


>gi|311743281|ref|ZP_07717088.1| possible DNA polymerase III subunit epsilon [Aeromicrobium marinum
           DSM 15272]
 gi|311313349|gb|EFQ83259.1| possible DNA polymerase III subunit epsilon [Aeromicrobium marinum
           DSM 15272]
          Length = 278

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 14/150 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ETTG+D   DR++    ++     +  R+    + P G      A  +HG+    L+
Sbjct: 59  LDLETTGVDPLRDRVVSFALLD----DQVERSG--LVDP-GVPIPEGASAVHGLDAAALR 111

Query: 72  DKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--IID- 125
             P+     +E  D+     ++    +  NA +D+  + AE +R      D SR  +ID 
Sbjct: 112 GAPAPRGALTEVLDWVQQVVDRGVPLVVFNAPYDLTMLRAEAERWGLVQPDWSRLLVIDP 171

Query: 126 -TLSIARRKHPSSRNDLNSLCKRYGITISH 154
             +     +       L  +   Y + +++
Sbjct: 172 YVVDWGIVRGELGPRRLTDVAAYYEVELAN 201


>gi|167621824|ref|YP_001676609.1| exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
 gi|167351565|gb|ABZ74295.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
          Length = 299

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 58/175 (33%), Gaps = 17/175 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCPNGRKNSPEALKLHG 64
           I  D+ETTG +   D IIE+  V                F     P+    S E  ++ G
Sbjct: 47  IYLDVETTGKNPVRDEIIELAMVPFQYDEAGRLCGVGAPFVALREPS-APISAEITRITG 105

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT+  +  + S          F     A  +AHNA FD  F     +         S  +
Sbjct: 106 ITNAMVAGQ-SIDPAM--VAAFIAPA-AVIVAHNASFDRRFTERFCEAFQAKGWACS--M 159

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             +  A      ++  L+ L  + G        H A  D     ++  + +  G 
Sbjct: 160 SQVDWAGEGFEGTK--LSYLASQCGFFFDG---HRAENDCLAGLEILARPLASGR 209


>gi|16082354|ref|NP_394831.1| hypothetical protein Ta1376 [Thermoplasma acidophilum DSM 1728]
 gi|10640719|emb|CAC12497.1| hypothetical protein [Thermoplasma acidophilum]
          Length = 188

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 10/178 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDE 68
           I  D ETTGLD     +I +GAV   D    +  F +   P+        AL ++G T E
Sbjct: 2   IFIDTETTGLDPTKCSVISVGAVVYED---PSSRFYMEARPDPDAMIDDGALAVNGFTKE 58

Query: 69  FLKD-KPSFSSIFSEFWDFF--NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +L     +   + + F +++  N  +     +N  FD+ F++ E    +   +   R ID
Sbjct: 59  YLSSIANAMYDMLTTFTEWYASNSSDYTVAGYNIDFDISFLSQECLMNSVRMIRIDRRID 118

Query: 126 T--LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
              L      +   R  L+ L    G+  + R  H AL  +   ++ Y  ++     +
Sbjct: 119 LKNLFETSDLYKGGRKRLDDLLMALGLG-TERKPHNALYGALAEAEAYAMLVEKRRIL 175


>gi|326496743|dbj|BAJ98398.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 485

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 73/173 (42%), Gaps = 18/173 (10%)

Query: 9   KIVFDIET-----TGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCP-NGRKNSPEALK 61
              FD+ET      G   +   ++E GA+ +          +   + P +    S  +++
Sbjct: 26  IAFFDLETSVPQRAG---QGYALLEFGAILVCPRRLVEVACYATLVRPADLGVVSAASMR 82

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP 120
            +GIT + +   P F  +  + +D  + +   W  HN  +FDV  I      I + P +P
Sbjct: 83  CNGITRDAVAAAPCFRDVADKAYDLLHGR--VWAGHNIVRFDVPRIREAFIEIGRPPPEP 140

Query: 121 SRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +IDTL +  ++    +    + SL   +G+    R KH +L D  +  +V 
Sbjct: 141 KGMIDTLPLLTQRFGRRAGDMKMASLANYFGL---GRQKHRSLDDVRMNLEVL 190


>gi|255658382|ref|ZP_05403791.1| putative DNA polymerase III subunit epsilon [Mitsuokella multacida
           DSM 20544]
 gi|260849714|gb|EEX69721.1| putative DNA polymerase III subunit epsilon [Mitsuokella multacida
           DSM 20544]
          Length = 241

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 13/173 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD+E  G  +  D IIEIGA+ L   +     F+  + P     +     + G+T E 
Sbjct: 42  VSFDLEMAG--AFPDDIIEIGAIRLPLGNDKIEVFRRLIRPRTF-INRTVRDMTGLTKED 98

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAH----NAKFDVGF-INAELQRINKDPLDPSRII 124
           L+DK +   I  EF DF + ++   + H    N    +   +     +   +     R +
Sbjct: 99  LRDKSTLDVILPEFLDFVDPEDLV-VGHAIGDNDLLSINLALIRMNHKNGTNIRFCPRYL 157

Query: 125 DTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           DT+ +A++  P   + +L +L + +G     + KH A  D+   S V ++ ++
Sbjct: 158 DTVRLAQQLLPKRKKYNLIALLESFG--WHSKKKHRAFEDALA-SYVLLECLL 207


>gi|307139287|ref|ZP_07498643.1| conserved hypothetical plasmid protein [Escherichia coli H736]
 gi|331643276|ref|ZP_08344408.1| exonuclease superfamily [Escherichia coli H736]
 gi|331037503|gb|EGI09726.1| exonuclease superfamily [Escherichia coli H736]
          Length = 282

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 15/168 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD      +EIG  +          F+  L P       +A  +HGI+++
Sbjct: 104 PLFLDTETTGLD-NTAEALEIGLTDAAGQVV----FETRLKPTVA-IGAQAAAVHGISEQ 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            L   PS++ +  +      ++    I  NA+FD+  +       +   D L+   +   
Sbjct: 158 ALCGAPSWTDVARQLRHAIGDR--PVIIFNARFDIRILKQTAAAHSDPADWLEELTVYCA 215

Query: 127 LSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +A   + ++       L S   + G+T      H A+ D+ + + V
Sbjct: 216 MELAAGYYGATNRYGTISLASAASQAGLTWEGL-AHSAIADARMAAGV 262


>gi|225438656|ref|XP_002277040.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296082445|emb|CBI21450.3| unnamed protein product [Vitis vinifera]
          Length = 303

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 16/172 (9%)

Query: 9   KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKL--- 62
            + FD+ETT  +    R  ++E GA+ +         ++   + P     S  AL+    
Sbjct: 15  IVFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTLIRPG--DLSAVALRSGRS 72

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
            GIT E +   P F  +  + +   N +   W  HN  +FD   I      I +    P 
Sbjct: 73  DGITREVVAGAPGFEEVADQIFSILNGR--VWAGHNIQRFDCVRIKEAFAEIGRAAPVPV 130

Query: 122 RIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +ID+L +   K    +    + +L   +G+    + KH +L D  +  +V 
Sbjct: 131 GMIDSLGVLTEKFGRRAGNMKMATLATYFGL---GQQKHRSLDDVRMNLEVL 179


>gi|147791948|emb|CAN61478.1| hypothetical protein VITISV_013817 [Vitis vinifera]
          Length = 293

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 16/172 (9%)

Query: 9   KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKL--- 62
            + FD+ETT  +    R  ++E GA+ +         ++   + P     S  AL+    
Sbjct: 48  IVFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTLIRPG--DLSAVALRSGRS 105

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
            GIT E +   P F  +  + +   N +   W  HN  +FD   I      I +    P 
Sbjct: 106 DGITREVVAGAPGFEEVADQIFSILNGR--VWAGHNIQRFDCVRIKEAFAEIGRAAPVPV 163

Query: 122 RIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +ID+L +   K    +    + +L   +G+    + KH +L D  +  +V 
Sbjct: 164 GMIDSLGVLTEKFGRRAGNMKMATLATYFGL---GQQKHRSLDDVRMNLEVL 212


>gi|323450230|gb|EGB06112.1| hypothetical protein AURANDRAFT_65802 [Aureococcus anophagefferens]
          Length = 1190

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 74/190 (38%), Gaps = 21/190 (11%)

Query: 2   IRKNKMRKIVF--DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           +R+   + +    D+ETT        ++++    + +   ++  FQ  + P G      A
Sbjct: 34  LRRASTKPVAIAYDLETTSAWPATAEVVQLAFTNVAN---SDEHFQALVLPEGG-VDGGA 89

Query: 60  LKLHGITDEFLKD--KPSFSSIFSEFWDFFN----EQNAEWIAHN-AKFDVGFINAELQR 112
             +HG T   LK      F   +    D+ +    ++     AHN  +FD   +   + +
Sbjct: 90  AAVHGYTKASLKKKRALPFDVAWGMARDWLDAVRDDRPVVLAAHNGDRFDHPILRRLVAK 149

Query: 113 INKDP-LDPSRIIDTLSIARRKHPSSR----NDLNSL-CKRYGITISHRSKHGALLDSHL 166
              +  L  +   DTL +AR   P  R    + L  L     G  +     H AL D+  
Sbjct: 150 HAAEADLASALWFDTLPLAREAFPDRRGPGSHTLGRLFSDATGGPL--GGAHDALADARA 207

Query: 167 LSDVYIKMMV 176
           +++V+  ++ 
Sbjct: 208 VAEVWPWLVA 217


>gi|172040411|ref|YP_001800125.1| DNA polymerase III subunit epsilon [Corynebacterium urealyticum DSM
           7109]
 gi|171851715|emb|CAQ04691.1| DNA polymerase III, epsilon subunit [Corynebacterium urealyticum
           DSM 7109]
          Length = 237

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 15/153 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG +  + RI+    V +      +      L   G +   +A  +HGIT E+ +
Sbjct: 28  FDLETTGTNPLSARIVTSAMVRIRGSQVEDVE---LLADPGVEIPEQASAVHGITTEYAR 84

Query: 72  D-KPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +       + +E         E+ A  +  NA +D+  + ++      D      +ID L
Sbjct: 85  EHGKPHDEVLAETIRAIRQGWEEGATLVVFNAPYDLTVLRSQDPSFTVD----GPVIDPL 140

Query: 128 SIARRK--HPSSRNDLNSLCKRYGITISHRSKH 158
            + R    +   +  L ++C+ Y + + +   H
Sbjct: 141 LLDRHFDQYRKGKRTLGAVCEHYEVALDN--AH 171


>gi|227488026|ref|ZP_03918342.1| DNA polymerase III, epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227542667|ref|ZP_03972716.1| DNA polymerase III, epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227091888|gb|EEI27200.1| DNA polymerase III, epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227181550|gb|EEI62522.1| DNA polymerase III, epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 224

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 72/174 (41%), Gaps = 11/174 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +  + + FD+ETT  D     ++    +  +D S  + T+   L   G   S EA 
Sbjct: 1   MYSFDPSKMVAFDLETTTNDPLKAHVVTSSVIR-IDGSNADETY--LLADPGIPISEEAE 57

Query: 61  KLHGITDEFLK-DKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKD 116
           K+HGI++E+ K +      + ++  +      ++    I  N  FD+  ++        D
Sbjct: 58  KVHGISNEYAKANGEPHDDVVAKTVELIRRGWDEGFTLIVFNGCFDLTILHQCSPDFTID 117

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            L     I  +   +  + + + +L+++ + Y I +     H +  DS   + +
Sbjct: 118 GLVVDPYI--IDKKKDHYRAGKRNLSAMSEYYEIRLD--KAHNSSADSLAAARI 167


>gi|330938574|gb|EGH42148.1| exonuclease [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 237

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 84/203 (41%), Gaps = 10/203 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP A+ +
Sbjct: 38  LREQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISP-AVLI 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+    +           +F +F    ++  +  +A FD   ++  L+      L    
Sbjct: 97  HGLAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALKESLGYRL-QHA 153

Query: 123 IIDTLSIARRK--HPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             DT  IA     H + R+  L+   + +G+    R  H A  D+ + +++ + +     
Sbjct: 154 FFDTAEIAPMLCEHANLRHAGLDDWTRFFGLHAEER--HHASADALVTAELALILFSHAR 211

Query: 180 QINFGFKTNEDRFFKEEKKTVPN 202
           +         +    + ++   +
Sbjct: 212 RQQIDSPLRLEEALGQWRRRRQS 234


>gi|320330625|gb|EFW86603.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 237

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 84/202 (41%), Gaps = 8/202 (3%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ +GAV + D +    + F+  L     K SP A+ +
Sbjct: 38  LRQQRWVVLDLETSGLNMNRDQVLSMGAVVIEDGAIDLGQQFERTLLRVDHKISP-AVLI 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPS 121
           HG+    +           +F +F    ++  +  +A FD   ++  L+  +      P 
Sbjct: 97  HGLAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALKESLGYRLQHPF 154

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                ++    +H + R+  L+   + +G+    R  H A  D+ + +++ + +     +
Sbjct: 155 FDAAEIAPMLCEHANLRHAGLDDWTRFFGLHAEER--HHASADALVTAELALILFSDARR 212

Query: 181 INFGFKTNEDRFFKEEKKTVPN 202
                    +    + ++   +
Sbjct: 213 QQIDSPLRLEEALGQWRRRRQS 234


>gi|289674377|ref|ZP_06495267.1| exonuclease [Pseudomonas syringae pv. syringae FF5]
          Length = 237

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 84/202 (41%), Gaps = 8/202 (3%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP A+ +
Sbjct: 38  LREQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISP-AVLI 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPS 121
           HG+    +           +F +F    ++  +  +A FD   ++  L+  +        
Sbjct: 97  HGLAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALKESLGYRLQHAF 154

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +  ++    +H + R+  L+   + +G+    R  H A  D+ + +++ + +     +
Sbjct: 155 FDVAEIAPMLCEHANLRHAGLDDWTRFFGLHAEQR--HHASADALVTAELALILFSHARR 212

Query: 181 INFGFKTNEDRFFKEEKKTVPN 202
                    +    + ++   +
Sbjct: 213 QQIDSPLRLEEALGQWRRRRQS 234


>gi|237802391|ref|ZP_04590852.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025248|gb|EGI05304.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 237

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 82/202 (40%), Gaps = 8/202 (3%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP A+ +
Sbjct: 38  LRQQRWVVLDLETSGLNMSRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP-AVLI 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPS 121
           HG+    +           +   F    ++  +  +A FD   ++  L+  +      P 
Sbjct: 97  HGLAPSAIAAGSEPVEALLDLMAFIG--DSPVLGFHAPFDQHMLSRALKESLGYRLQHPF 154

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             I  L+    +  + R+  L+   + +G+    R  H A  D+ + +++ + +     +
Sbjct: 155 FDIAELAPMLCEQANLRHAGLDDWTRFFGLQAEER--HHASADALVTAELALILFSHARR 212

Query: 181 INFGFKTNEDRFFKEEKKTVPN 202
                    D    + ++   +
Sbjct: 213 KQIDSPLLLDERLGQWRRRTQS 234


>gi|154507795|ref|ZP_02043437.1| hypothetical protein ACTODO_00277 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797429|gb|EDN79849.1| hypothetical protein ACTODO_00277 [Actinomyces odontolyticus ATCC
           17982]
          Length = 250

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 19/189 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY----SKTN--RTFQVFLCPNGRKNSPEALKLHGI 65
           FD ETTG+ +  DR++    V  +D     S  +       +L   G +   +A  +HGI
Sbjct: 11  FDTETTGVRALKDRLVTGALVLRIDGASYRSGVSAPDQVATWLTDPGVEIPEQATAVHGI 70

Query: 66  TDEFL-KDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLD-- 119
           T E   +D      +  E      E   +    +A NA +D+  +N EL+R      +  
Sbjct: 71  TTEQARRDGRPIEEVLHELAGSIVEHWLRGYPVVAFNATYDITLVNQELRRHRLGSFEER 130

Query: 120 ----PSRIIDTLSIARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               P  I+D L + R+       +  L  +   YG  ++    H A +D  +  DV   
Sbjct: 131 LEGAPMLIVDPLVLDRKLDRFRKGKKTLTEMAPVYG-AVASPDAHTAEVDVAMTLDVLAG 189

Query: 174 MMVGGSQIN 182
           M+    Q+ 
Sbjct: 190 MVDKYPQLA 198


>gi|145295382|ref|YP_001138203.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum R]
 gi|140845302|dbj|BAF54301.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 237

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 70/181 (38%), Gaps = 11/181 (6%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +  + + FD+ETTG++  + RI+    V +   SK     ++   P G +    A  +HG
Sbjct: 15  DTTKMLSFDLETTGVNPFDTRIVTSAMVTIT--SKGAEPIELLADP-GIEIPEAATAVHG 71

Query: 65  ITDEFLK-DKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           IT E  + +      + +E         +     I  NA +D+  +         D L  
Sbjct: 72  ITTEHARANGRPHDEVLAETISRLRAGWQAGLSVIVFNASYDLTVLRNHDPSFTIDGLVY 131

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              +  +   + ++   +  L  +C  Y + + +   H A  D+   + +  K +    +
Sbjct: 132 DPFV--IDKVKDRYRKGKRTLTDMCAHYDVQLGN--AHEATSDALAAARIAWKQVRLWPE 187

Query: 181 I 181
           +
Sbjct: 188 L 188


>gi|42568689|ref|NP_200947.3| exonuclease family protein [Arabidopsis thaliana]
 gi|111074224|gb|ABH04485.1| At5g61390 [Arabidopsis thaliana]
 gi|332010078|gb|AED97461.1| exonuclease-like protein [Arabidopsis thaliana]
          Length = 487

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 87/220 (39%), Gaps = 19/220 (8%)

Query: 4   KNKMRKIVFDIETT-----GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNS- 56
           +++     FD+ETT     G   +   I+E G++ +        + + V + P       
Sbjct: 11  EDRSEIAFFDVETTIPFRVG---QGYAILEFGSILVCPKKLVELKNYSVLVRPANLNLIT 67

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           P ++K +GI  E ++   +F+ I    +D  + +   W  HN  KFD   I      I +
Sbjct: 68  PRSVKCNGIKREDVESALTFADIADTVYDILHGR--IWAGHNILKFDCPRIREAFAEIGR 125

Query: 116 DPLDPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           DP +P   ID+L++  ++    +    + +L   +G+       H +L D  +  +V   
Sbjct: 126 DPPEPKGTIDSLALLTQRFGRRAGDMKMATLATYFGLGN---QTHRSLDDVRMNFEVLKY 182

Query: 174 -MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
              V   + +   +  E+       +T        +  PL
Sbjct: 183 CATVLFLESSLPDELIENSVTTTTPETSSRRRRTIKKSPL 222


>gi|153811608|ref|ZP_01964276.1| hypothetical protein RUMOBE_02000 [Ruminococcus obeum ATCC 29174]
 gi|149832349|gb|EDM87434.1| hypothetical protein RUMOBE_02000 [Ruminococcus obeum ATCC 29174]
          Length = 319

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 67/181 (37%), Gaps = 16/181 (8%)

Query: 7   MRKIVFDIE---TTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  IVFD+E   + G    ++      IIEIGAV++ +  +    FQ  + P       +
Sbjct: 1   MNYIVFDLEWNQSPGGKKYSNSRLPFEIIEIGAVKMNEQREVVDVFQRLVKPQVYNWIHD 60

Query: 59  AL-KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           ++ ++  +  + L D   F     EF  +  E+   +       DV  +   ++      
Sbjct: 61  SIHEVIHVDYKDLADGEPFQQAVREFLKWCGEE-YVFCTW-GNQDVMELQRNMKYYGMLS 118

Query: 118 LDPSR--IIDTLSIARRKHP--SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L P      D   I    H     R  L     + GI  +    H AL D+    D++  
Sbjct: 119 LLPGPVTYYDVQKIYGICHEEAGGRRSLEFAIDQMGIPKAQ-DFHRALTDARYTGDIFKT 177

Query: 174 M 174
           +
Sbjct: 178 L 178


>gi|288928364|ref|ZP_06422211.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331198|gb|EFC69782.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108]
          Length = 165

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 9/152 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + K + +  +G V + +    +  +   + P         + +HG+T  
Sbjct: 4   FAAIDFETA--NFKRESVCSVGLVLVEEGKIVDSYYH-LIQPTPNYFEERCVTVHGLTTA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               +P+F  +++E       +N   +AHN  FD   + A     + +  D      TL 
Sbjct: 61  DTNGQPTFPDVWAEIAPLI--RNKPLVAHNKAFDESCLKAAFAAYDMEYPD-YPFYCTLL 117

Query: 129 IARRKHPSS---RNDLNSLCKRYGITISHRSK 157
            ARRK   S      L ++    G  +     
Sbjct: 118 TARRKLKESGLADFRLPTVASHCGYELDMHHH 149


>gi|119383203|ref|YP_914259.1| exonuclease, RNase T and DNA polymerase III [Paracoccus
           denitrificans PD1222]
 gi|119372970|gb|ABL68563.1| Exonuclease, RNase T and DNA polymerase III [Paracoccus
           denitrificans PD1222]
          Length = 303

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 61/175 (34%), Gaps = 18/175 (10%)

Query: 3   RKNKMRKI-VFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCPNGRKNSP 57
           R  +MR + + D ETTGLD   DR++EI      V+           + +    GR   P
Sbjct: 48  RSTEMRIVAIIDTETTGLDPTTDRLVEIAIERLSVDARGRIIEMEHPRSWREDPGRSMPP 107

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
               L G+TD  L    +F            E +   IAHNA FD  F++          
Sbjct: 108 RLTLLTGLTDADLAGC-AFDD--ESIVAQLGEAD-VIIAHNAAFDRPFVDVRF-----PA 158

Query: 118 LDPSRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           L       +L+             L  L  + G        H A  D H L+ + 
Sbjct: 159 LQHQAWGCSLTQLDWLTLGFDGRALGHLLFQAGWYFKG---HRAEQDVHALATLL 210


>gi|66472468|ref|NP_001018476.1| ERI1 exoribonuclease 2 [Danio rerio]
 gi|82228769|sp|Q502M8|ERI2_DANRE RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease
           domain-containing protein 1
 gi|63100865|gb|AAH95637.1| Zgc:111991 [Danio rerio]
          Length = 555

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 73/232 (31%), Gaps = 32/232 (13%)

Query: 6   KMRK---IVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SP 57
           K R    I+ D E+T      S    IIE    +  +        F  ++ P  R   S 
Sbjct: 29  KQRFSFLIIIDFESTCWREKSSSGQEIIEFPAVLLSVCSGAVESEFHSYVQPQERPVLSA 88

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFN-----------------EQNAEWIAHNAK 100
              +L GIT + +   P    + S F  +                     +A+  A    
Sbjct: 89  FCTELTGITQDQVDSAPPLHVVLSRFSRWLRSLQEERGVVFLTDSSGAAPSAQLCAFVTW 148

Query: 101 FDV----GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
            D       +    ++    P      ID  +  +  +      L       GI  + R 
Sbjct: 149 SDWDLGVCLLYECKRKQLSVPEALKNWIDLRATYKLFYNRKPKGLRGALLDLGIEFTGRE 208

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
            H  L+D+   + +  +MM  G Q++    + E R   + +       L +R
Sbjct: 209 -HSGLVDARNTALLAQRMMTDGCQLS--ITSPERRAQVKPRPHTRPSGLRER 257


>gi|262194304|ref|YP_003265513.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077651|gb|ACY13620.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 64/175 (36%), Gaps = 10/175 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNG-RKNSPEALKLHG 64
              +  D ETTGLD +   I+EI A+ +   +    R   + + P       PEAL+++G
Sbjct: 2   QPLVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVNG 61

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRI 123
                  D  S     +E       + A    HN  FD  F+ A    +   P +     
Sbjct: 62  YRRRVWADAVSLGDAMAELAPML--EGAVLAGHNVAFDRRFLEAAWDYVGHRPENLDHHA 119

Query: 124 IDTLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DT ++A     +       L  +C   G+       H A  D      V  +++
Sbjct: 120 LDTAALAFPLLMAGEIDSLSLTPVCAHLGVLRGEE--HWAFDDVRACLGVARRLL 172


>gi|330956986|gb|EGH57246.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 237

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 83/203 (40%), Gaps = 10/203 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP A+ +
Sbjct: 38  LRQQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP-AVLI 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+    +      +    +F +F    ++  +  +A FD   +   L+  + D      
Sbjct: 97  HGLAPSTIAAGSEPAQALLDFMEFVG--DSPILGFHAPFDQHMLARALKE-SLDYRLQHP 153

Query: 123 IIDTLSIARRKHPSS--RN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             D   IA      +  R+  L+   + +G+    R  H A  D+ + +++ + +     
Sbjct: 154 FFDAAEIAPMLFEQANLRHAGLDDWTRYFGLHAEER--HNASADALVTAELALILFSHAR 211

Query: 180 QINFGFKTNEDRFFKEEKKTVPN 202
           +         +    + ++   +
Sbjct: 212 RQQIDSPLLLEEKLGQWRRRKQS 234


>gi|163800878|ref|ZP_02194778.1| hypothetical protein 1103602000593_AND4_01408 [Vibrio sp. AND4]
 gi|159175227|gb|EDP60024.1| hypothetical protein AND4_01408 [Vibrio sp. AND4]
          Length = 207

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 63/185 (34%), Gaps = 25/185 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M + +    I+ + +TTG  S +  I+E  A+               + P       +A 
Sbjct: 1   MKKLSIQNAIILNTKTTGFGS-SAEIVEFTAICADSGKVIVNK---LVKPTC-SIPAQAT 55

Query: 61  KLHGITDEFLKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118
            +HGITDE ++    F  +FS  F    N +    I +N  F+   I   L++       
Sbjct: 56  AIHGITDEDVQGAFDFHLVFSNHFLPLLNGR--PIIIYNTDFETRMIIQSLEKHCNSAYL 113

Query: 119 --------DPSRIIDTLSIARRKHPSSRN--------DLNSLCKRYGITISHRSKHGALL 162
                           +      H    +         L++ C +  + +S  + H AL 
Sbjct: 114 QSVQELLSIFCVPQCAMLWYAEFHGLWDHEHDDFKWQSLSNACAQELVDVSDLTAHRALS 173

Query: 163 DSHLL 167
           D  + 
Sbjct: 174 DCEMT 178


>gi|300779659|ref|ZP_07089515.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
 gi|300533769|gb|EFK54828.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
          Length = 959

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 11/151 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V D+ TTG    +DRI+E+G V L    +   T++  + PN R        +H +T  
Sbjct: 7   FAVIDVVTTGF-GGSDRIVEVGVVLLDQQLREQGTWETLVQPN-RDI--ATCHVHKLTAT 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDPSRIIDTL 127
            LK+ P++  +  E       +    +AHNA F+  F++ E  R+     +  +  +DT 
Sbjct: 63  HLKNAPTWEEVAPELAQVI--RGRIGVAHNASFEKRFLSKEFCRVGIATNVGEAHWVDTK 120

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            +A  +       L    +  G+T S    H
Sbjct: 121 DLATAQLGCG--SLADALEAAGLTNS--EPH 147


>gi|308050117|ref|YP_003913683.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
 gi|307632307|gb|ADN76609.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
          Length = 223

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 15/173 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLH 63
            +   +  D+E TGLD + D I+ I AV ++       +++   +  +G     ++  +H
Sbjct: 33  REQPMLALDLELTGLDVRQDAILSIAAVPIIRGRLVLAQSWHQLVSIDGG--VGQSATIH 90

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI D  L D                      + H+   D+GF+ A  Q      L P ++
Sbjct: 91  GIHDRHLTDAQPLEQALL--ALLPQLAGRVLVCHHGGLDLGFLQAGFQHHFGQGL-PLKV 147

Query: 124 IDTLSIARRKHPSSRNDLNS-------LCKRYGITISHRSKHGALLDSHLLSD 169
           IDTL I +R+       L +         +RYG+       H AL+D+    +
Sbjct: 148 IDTLKIEQRRLERQGTVLKADSLRLAQCRRRYGLP--DYPGHHALVDAIACGE 198


>gi|323144276|ref|ZP_08078898.1| exonuclease [Succinatimonas hippei YIT 12066]
 gi|322415946|gb|EFY06658.1| exonuclease [Succinatimonas hippei YIT 12066]
          Length = 232

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 9/174 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALK 61
            + +     D ETTGLD   D I+ +G V+ ++  + + +  F  F+    +  S  A+ 
Sbjct: 42  LDSLPLTALDFETTGLDFNEDLILSMGWVD-INRGEIDFSSGFHTFINIADKVKSHSAV- 99

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           ++ IT E L    S +   ++  +    +    I H A  +  F++  L+ +    L P 
Sbjct: 100 INHITPEMLLHGVSLNEALNQLIEHIKGR--IIICHAAVIEKTFLSKALE-LKDPALLPL 156

Query: 122 RIIDTLSIARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             +DTL + +    H  + NDL     R    +     H A  DS   ++V++ 
Sbjct: 157 IFLDTLLLEKSFSTHTGNVNDLRLSSIRRRRKLPAYCAHNAFADSVATAEVFLA 210


>gi|270635229|ref|ZP_06222077.1| ribonuclease T [Haemophilus influenzae HK1212]
 gi|270317424|gb|EFA28930.1| ribonuclease T [Haemophilus influenzae HK1212]
          Length = 151

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 61  KLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQR 112
           K +GI     L+         +  +          + Q +  +AHNA FD  F+ A  +R
Sbjct: 17  KFNGIDIHNPLRGTVPELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAER 76

Query: 113 IN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
               ++P  P  + DT S+A       +  L   C+   I    +  H AL D+   + +
Sbjct: 77  TGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTERTAKL 134

Query: 171 YIKMMVGGSQIN 182
           +  M+     + 
Sbjct: 135 FCYMVNHLKDLG 146


>gi|104784044|ref|YP_610542.1| exonuclease [Pseudomonas entomophila L48]
 gi|95113031|emb|CAK17759.1| putative exonuclease [Pseudomonas entomophila L48]
          Length = 236

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 84/199 (42%), Gaps = 10/199 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    R F+  L    +K +   L +
Sbjct: 36  LREQRWVVLDLETSGLNLNRDQVLSIGAVAIEDGAIDLGRPFERTLHRPTQKTNASVL-I 94

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H +    L      +    +   F    ++  +A +A FD   +   L+      L    
Sbjct: 95  HRLGPSALAAGCDPAEALLDLLAFIG--DSPVLAFHAPFDQRMLARALKDSLGLRL-QHV 151

Query: 123 IIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +D   +A   +P +      L+    R+G+ +  +++H A  D+ + +++ + +     
Sbjct: 152 FLDVAELAPMLNPDTVLREAGLDDWIARFGLEV--QARHHASADAQVTAELALILFSQAR 209

Query: 180 QINFGFKTNEDRFFKEEKK 198
           +         ++  K+ ++
Sbjct: 210 RQQLDSPLQLEQRLKQWRR 228


>gi|160932735|ref|ZP_02080124.1| hypothetical protein CLOLEP_01576 [Clostridium leptum DSM 753]
 gi|156867809|gb|EDO61181.1| hypothetical protein CLOLEP_01576 [Clostridium leptum DSM 753]
          Length = 293

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 12/201 (5%)

Query: 7   MRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEAL 60
           M  ++ D+E  G  SK      + IIE GAV++ D      TF V + P  G+K S +  
Sbjct: 1   MEFVILDLEWNGTYSKRKSGFFNEIIEFGAVKVNDRLCVEDTFSVVVKPQIGKKLSSKVK 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L  I+ E L    +++   S+F  F    NA  +       +  +         D LD 
Sbjct: 61  NLTNISSEELGLGVTYTRAVSKFKKFLG--NAVLMTWGTSDILALMENHQYYWGTDRLDY 118

Query: 121 SRIIDTLS--IARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                 L     RR +     +  L++  +  GI +     H AL DS L    + ++  
Sbjct: 119 IEGYVNLQSFCERRVYYERGKQMGLSTAAQLLGIDVQGMEHHRALDDSLLALACFRRLYD 178

Query: 177 GGSQINFGFKTNEDRFFKEEK 197
                 F    ++D+F+ + +
Sbjct: 179 EEELKPFFEDASKDQFYDKMR 199


>gi|116074604|ref|ZP_01471865.1| Exonuclease [Synechococcus sp. RS9916]
 gi|116067826|gb|EAU73579.1| Exonuclease [Synechococcus sp. RS9916]
          Length = 317

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 70/177 (39%), Gaps = 8/177 (4%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGLD + +  +E+GA+     S+     Q FL P        A  ++ I    
Sbjct: 90  LILDTETTGLDPETEHCLEVGAILFDVPSRQVLAQQSFLLPVQAN---AAEPINRIPAAV 146

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +    + +  + F    +      +AHNA FD  +           P   S  +D +  
Sbjct: 147 TRLAQPWEAALAYFQSLLDAAE-VLVAHNAAFDRQWFGRGCLPSTAKPWLCS--MDDMRW 203

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            + +   +R  +  L   Y + +   + H AL D   +++V+ +      ++  G +
Sbjct: 204 PKNRQLRARPSVRDLALAYEVPVW--AAHRALTDCIYIAEVFRRCEDLEQRLVHGLE 258


>gi|218296944|ref|ZP_03497630.1| ATP-dependent DNA helicase, RecQ family [Thermus aquaticus Y51MC23]
 gi|218242647|gb|EED09183.1| ATP-dependent DNA helicase, RecQ family [Thermus aquaticus Y51MC23]
          Length = 1684

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 77/227 (33%), Gaps = 22/227 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT- 66
            +  D+E T  D +   I+E+ A +        RTF  +L          EA ++  I  
Sbjct: 7   FVALDLEATSPDPEEAEILELAAQDSQ-----GRTFHRYLATNKPLSKDHEAFRITQIPF 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-PLDPSRII 124
           +E+ ++K        EF DF   ++   + HN  ++D+  +   L  +  + P +  R +
Sbjct: 62  EEYEREKVPPERALREFLDFLGGRS--LLGHNLLRYDLPLLERALGEVGLNLPPEAYRAL 119

Query: 125 DTLSIARRKHPSSR-----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV--- 176
           DTL +A    P  +       L  L   Y         H A  D      +   +     
Sbjct: 120 DTLRLAHLVFPIPKDGLAGYRLGDLY-HYLTQEELEGAHRAATDVGATWRILEALSQVQI 178

Query: 177 --GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
             G +Q        E + F             +R K L     + E 
Sbjct: 179 PPGVAQAWVELGLLEGQLFFPSGGAETEEVASQRVKDLLQAPARVER 225


>gi|42782602|ref|NP_979849.1| exonuclease [Bacillus cereus ATCC 10987]
 gi|42738528|gb|AAS42457.1| exonuclease family protein [Bacillus cereus ATCC 10987]
          Length = 281

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 74/180 (41%), Gaps = 13/180 (7%)

Query: 3   RKNKMRKIVFDIETTGLDSKND---RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPE 58
            KN    IVFDIE      K+D    I++IGAV++     K    F   + P G + +  
Sbjct: 1   MKNTTHFIVFDIERNFRPYKSDDPSEIVDIGAVKIEASTMKVIGEFSELVKP-GARLTRH 59

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             KL GIT + L +   F  I   F  F   +++ ++    + D  F+  +      D  
Sbjct: 60  TTKLTGITKKDLMNVEKFPQIIERFIQFIG-EDSIFVTWGKE-DYRFLVHDCTLHGVDCP 117

Query: 119 DP--SRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                R ID    +  A  +       L S  ++ G+T   +  H AL D+   +++ +K
Sbjct: 118 CMEKERRIDLQKFVFQAYEELFEHTPSLQSAVEQLGLTWEGKQ-HRALADAENTANILLK 176


>gi|9757860|dbj|BAB08494.1| exonuclease-like protein [Arabidopsis thaliana]
          Length = 500

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 18/178 (10%)

Query: 4   KNKMRKIVFDIETT-----GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNS- 56
           +++     FD+ETT     G   +   I+E G++ +        + + V + P       
Sbjct: 8   EDRSEIAFFDVETTIPFRVG---QGYAILEFGSILVCPKKLVELKNYSVLVRPANLNLIT 64

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           P ++K +GI  E ++   +F+ I    +D  + +   W  HN  KFD   I      I +
Sbjct: 65  PRSVKCNGIKREDVESALTFADIADTVYDILHGR--IWAGHNILKFDCPRIREAFAEIGR 122

Query: 116 DPLDPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           DP +P   ID+L++  ++    +    + +L   +G+       H +L D  +  +V 
Sbjct: 123 DPPEPKGTIDSLALLTQRFGRRAGDMKMATLATYFGLGN---QTHRSLDDVRMNFEVL 177


>gi|262194078|ref|YP_003265287.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077425|gb|ACY13394.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 64/175 (36%), Gaps = 10/175 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNG-RKNSPEALKLHG 64
              +  D ETTGLD +   I+EI A+ +   +    R   + + P       PEAL+++G
Sbjct: 2   QPLVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVNG 61

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRI 123
                  D  S     +E       + A    HN  FD  F+ A    +   P +     
Sbjct: 62  YRRRAWADAVSLGDAMAELAPML--EGAVLAGHNVAFDRRFLEAAWDCVGHRPENLDHHA 119

Query: 124 IDTLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DT ++A     +       L  +C   G+       H A  D      V  +++
Sbjct: 120 LDTAALAFPLLMAGEIDSLSLTPVCAHLGVLRGEE--HWAFDDVRASLGVAQRLL 172


>gi|313884945|ref|ZP_07818697.1| DNA polymerase III, epsilon subunit [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619636|gb|EFR31073.1| DNA polymerase III, epsilon subunit [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 199

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 21/174 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M R      I FD+E T  + ++ +II++ AV      +    F  F+            
Sbjct: 1   MERLKD--YIAFDLEFTSFE-EDSQIIQVSAVRFKQGQEVA-HFDSFVN-TDHAIPSFIS 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD 119
            L GIT + ++  P   ++ +EF DF    +   I +NA K D+  +     + N   LD
Sbjct: 56  GLTGITLDQIQAAPKIDTVMNEFKDFVG--DLPLIGYNALKSDLPLL-----KANNLDLD 108

Query: 120 PSRIIDTLSIARRK---HPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLS 168
               ID    AR +   + +      L ++   + I       H +L D+ + +
Sbjct: 109 AQYQIDVYEEARNRRDSYLAGSRGLSLQAVANYFKIK---GRGHNSLNDARMTA 159


>gi|171913521|ref|ZP_02928991.1| hypothetical protein VspiD_20115 [Verrucomicrobium spinosum DSM
           4136]
          Length = 202

 Score = 86.8 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 78/181 (43%), Gaps = 14/181 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGIT 66
           R +V D+ETTGLD +   I+EIGAV +L   +    F +   P+        A++++G  
Sbjct: 6   RLLVTDLETTGLDGRACGIVEIGAVWMLGAGE----FVMKCRPHADAVIEARAMEVNGCD 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID- 125
                   +      +F ++           N + D+ F+    +R   +     R +D 
Sbjct: 62  WHLDPTVAAEVEALEQFVEWVGAGPVILCGQNPRHDLWFLQEGAKRHGLELPFVHRTLDL 121

Query: 126 -TLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            TL++A      R+ P+     + + +  G+    +  H AL+ +   ++ + +M++G  
Sbjct: 122 HTLAVAYALACGRRVPAKGYYTDEIYELLGMEPEPK-PHRALVGAQKEAEAF-RMLLGLP 179

Query: 180 Q 180
           +
Sbjct: 180 E 180


>gi|312887481|ref|ZP_07747079.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter
           paludis DSM 18603]
 gi|311300023|gb|EFQ77094.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter
           paludis DSM 18603]
          Length = 232

 Score = 86.8 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 68/185 (36%), Gaps = 16/185 (8%)

Query: 9   KIVFDIETTGL----------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            +  D ET+GL          D+     +++  +      +  +    ++  +    +PE
Sbjct: 5   FLFIDTETSGLPKDWSQPYSNDANWPYALQVSWIIYTRAGEEIKRNNHYIRDDDFTINPE 64

Query: 59  ALKLHGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
           A  +HGI+ EFL         +    +    +     + H  + D      +  RI  D 
Sbjct: 65  AYNIHGISREFLNLHGEWRKDVMQLLYQDMLQYKPMVVGHYVELDYNIAGVDFYRIGMDN 124

Query: 117 PLDPSRIIDTLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           P+D      T+  ++    + R     L  L        +  ++H A++D+   ++ + +
Sbjct: 125 PMDTLPRYCTMLGSKGYGRNPRVEYLRLGQLYSAL-FNRTLYNQHNAIIDAEATAECFFE 183

Query: 174 MMVGG 178
           MM  G
Sbjct: 184 MMRDG 188


>gi|302188448|ref|ZP_07265121.1| exonuclease [Pseudomonas syringae pv. syringae 642]
          Length = 237

 Score = 86.8 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 84/202 (41%), Gaps = 8/202 (3%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP A+ +
Sbjct: 38  LREQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP-AVLI 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPS 121
           HG+    +           +F +F    ++  +  +A FD   ++  L+  +      P 
Sbjct: 97  HGLAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALKESLGYRLQHPF 154

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                ++    +H + R+  L+   + +G+    R  H A  D+ + +++ + +     +
Sbjct: 155 FDAAEIAPMLCEHANLRHAGLDDWTRFFGLHAEER--HHASADALVTAELALILFSHARR 212

Query: 181 INFGFKTNEDRFFKEEKKTVPN 202
                    +    + ++   +
Sbjct: 213 QQIDSPLRLEEALGQWRRRRQS 234


>gi|78484563|ref|YP_390488.1| exonuclease [Thiomicrospira crunogena XCL-2]
 gi|78362849|gb|ABB40814.1| Exonuclease [Thiomicrospira crunogena XCL-2]
          Length = 360

 Score = 86.8 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 73/197 (37%), Gaps = 24/197 (12%)

Query: 8   RKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + +  DIE T +    +  II++   +L      N+     + P G          H I 
Sbjct: 150 KVVCIDIEATDICTKDSADIIQVSICDLEGNELLNQ----LINP-GYDIPEN--DKHNIC 202

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIID 125
            E ++D P  +  + E      E +    A++ + D  ++     +++    LD S+ +D
Sbjct: 203 TEMVQDAPFLADAWDEIHRILAEADTVL-AYSTESDFAYLEKSAEKKMLTFELDYSKWLD 261

Query: 126 TLSIARRKHPSSRN------------DL-NSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              +++    + R              L ++  K  G        H AL D+   ++++ 
Sbjct: 262 VAELSKDLVGALRWQSEKMYWFYKTPKLTDAYAKIMGKPFPG-DAHDALADAQATAELFN 320

Query: 173 KMMVGGSQINFGFKTNE 189
            M++ G +     K  E
Sbjct: 321 AMLMRGRKSQVKIKKPE 337


>gi|332638341|ref|ZP_08417204.1| DNA polymerase III subunit alpha [Weissella cibaria KACC 11862]
          Length = 183

 Score = 86.8 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 74/186 (39%), Gaps = 20/186 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+       +VFD+E  G    +++IIEIGA+++       + F V +    + +   + 
Sbjct: 1   MLFTELKDYVVFDLEMNG----SNQIIEIGALKITTGKDIEK-FSVIVNNPPKGSGMASF 55

Query: 61  KL--------HG-ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAEL 110
           K         HG IT + + +  S     S F  F  E     + H     DV  +   L
Sbjct: 56  KFISQSMGGEHGWITLDMIHNGLSEERALSRFMKFVGE--YPVVGHAIVDGDVQLVKEGL 113

Query: 111 QRINKDPLDPS-RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168
           +  +      + +I DT  +    + +  +  L+ L   Y + I  + KH AL D+    
Sbjct: 114 RYHDLGKWHTNGKIFDTQQLHGALNGNPNDISLSGLAATYDVEI-GKQKHRALADAKATL 172

Query: 169 DVYIKM 174
            V+  M
Sbjct: 173 AVFSAM 178


>gi|119474667|ref|ZP_01615020.1| putative exonuclease [marine gamma proteobacterium HTCC2143]
 gi|119450870|gb|EAW32103.1| putative exonuclease [marine gamma proteobacterium HTCC2143]
          Length = 255

 Score = 86.8 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 76/186 (40%), Gaps = 14/186 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGL  +  ++IEI  ++       N      + P+  K S  A ++HGI    
Sbjct: 43  VILDTETTGLS-ETAQLIEICILDFEGNILLNER----VKPS-VKVSKGAREVHGIKARD 96

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           LK   S+  ++ ++ +    +N   +A+NAKFD   I    +  N            L+ 
Sbjct: 97  LKSCRSWPDVYRDYVEVTAGKN--IVAYNAKFDRRIITQTCRAFNLTMKKRKWYCLMLAF 154

Query: 130 A----RRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           +    R ++   + + L++    + +   +   H A  D      V  + +    +++  
Sbjct: 155 SELVGRTRYGDYKWHKLSTAAWVFDVP-PNDDAHSAYGDCETTLAVAKEFLQFDPELSLP 213

Query: 185 FKTNED 190
            +  +D
Sbjct: 214 LEDYKD 219


>gi|291542505|emb|CBL15615.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Ruminococcus bromii L2-63]
          Length = 296

 Score = 86.8 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 65/176 (36%), Gaps = 14/176 (7%)

Query: 7   MRKIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEAL 60
           M  ++ D+E  G     L    + IIEIGAV+L D      TF + + P  G+K   +  
Sbjct: 1   MSYVILDLEWNGSYSKVLHKFVNEIIEIGAVKLDDELNVCDTFTMLVAPKIGKKLCSKVK 60

Query: 61  KLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +L  IT+E LKD   SF    S F DF    +   +  +       I        +  L 
Sbjct: 61  QLTKITNEELKDEGVSFIRAISLFSDFLG--DGVLMTWSDSDLHALIENYSYYTGRTRLP 118

Query: 120 PSRIIDTLSIARRKHPSSRND-----LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                  L           +      L +  +  G+  S   +H AL D +L  + 
Sbjct: 119 FLSRYCNLQSYCEDCLDLHDSSCQLGLGACAEMAGVDFSEDDQHRALADVYLTLEC 174


>gi|302879827|ref|YP_003848391.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
 gi|302582616|gb|ADL56627.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
          Length = 234

 Score = 86.8 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 11/178 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V D+ET+GL+   DR+I IGAV +++       +F   +      +  E + LHGI 
Sbjct: 41  RCVVVDVETSGLNLWEDRLISIGAVAVVNGKIELGDSFY-IVLQQEIVSEKENILLHGIG 99

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIID 125
                +    +            Q    IA +  FD   I   + + +      P   + 
Sbjct: 100 GAAQAEGVPAADALL--AFLAFLQKDPLIAFHVTFDQTMIVRAISKYLGFSFKQPWSDMA 157

Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +  A     ++R   L+     + I     ++H AL D+ + + ++    VG SQ +
Sbjct: 158 YVMPALNPELAARFRSLDDWIAHFDIRND--ARHNALADALVTAQLFQ---VGASQAS 210


>gi|157418213|ref|YP_001481285.1| YacC [Escherichia coli APEC O1]
 gi|169546444|ref|YP_001711895.1| YacC [Escherichia coli]
 gi|331652519|ref|ZP_08353530.1| exonuclease superfamily [Escherichia coli M718]
 gi|88770263|gb|ABD51700.1| YacC [Escherichia coli APEC O1]
 gi|168830996|gb|ACA34777.1| YacC [Escherichia coli]
 gi|331049625|gb|EGI21691.1| exonuclease superfamily [Escherichia coli M718]
          Length = 282

 Score = 86.8 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 15/168 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD      +EIG  +          F+  L P       +A  +HGI+++
Sbjct: 104 PLFLDTETTGLD-NTAEALEIGLTDAAGQVV----FETRLKPTVA-IGAQAAAVHGISEQ 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            L   PS++ +  +      ++    I  N++FD+  +       +   D L+   +   
Sbjct: 158 ALCGAPSWTDVARQLRHAIGDR--PVIIFNSRFDIRILKQTAAAHSDPADWLEEMTVYCA 215

Query: 127 LSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +A   + ++       L S   + G+T      H  + D+ + + V
Sbjct: 216 MELAAGYYGATNRYGTISLASAASQAGLTWEG-QAHSTIADARMAAGV 262


>gi|262194028|ref|YP_003265237.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077375|gb|ACY13344.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 86.8 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNG-RKNSPEALKLHG 64
              +  D ETTGLD +   I+EI A+ +   +    R   + + P       PEAL+++G
Sbjct: 2   QPLVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVNG 61

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRI 123
                  D  S     +E       + A    HN  FD  F+      +   P       
Sbjct: 62  YRRRAWADAVSLGDAMAELAPML--EGAVLAGHNVAFDRRFLEVAWDCVGHRPETLDHHA 119

Query: 124 IDTLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +DT ++A     +       L  +C   G+       H A  D      V  +++
Sbjct: 120 LDTAALAFPLLMAGEIDSLSLTPVCAHLGVLRGEE--HWAFDDVRACLGVARRLL 172


>gi|254457146|ref|ZP_05070574.1| exonuclease [Campylobacterales bacterium GD 1]
 gi|207085938|gb|EDZ63222.1| exonuclease [Campylobacterales bacterium GD 1]
          Length = 247

 Score = 86.8 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 34/174 (19%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + ++ D ETTG+  +NDR+I++G V     D    N  +   +       S  A+++HGI
Sbjct: 4   KYVILDTETTGV-GENDRVIQLGYVVLGAKDVEVHNEFYSSDV-----PISFGAMEVHGI 57

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           T + L++KP+      +    +    +N   I HNA FD+G +    ++   +     ++
Sbjct: 58  TPDMLENKPACRDSVAYKRLCELNVSEN-YMIIHNAPFDLGML----EKEGFN--TQMKV 110

Query: 124 IDTLSIARRKHPSSR-NDLN------SL-------CKRYGITISHRSKHGALLD 163
           IDTL +A+   P    + L       +L           G+ +     H A+ D
Sbjct: 111 IDTLRVAKHILPDEDAHRLQYFRYKMALYKDEQKEADALGVVV---KAHDAIGD 161


>gi|312963467|ref|ZP_07777949.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
 gi|311282273|gb|EFQ60872.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
          Length = 235

 Score = 86.8 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 79/203 (38%), Gaps = 12/203 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
               R +V D+ET+GL+   D+++ IGAV + D +   ++ F+  L     K SP  L +
Sbjct: 36  LRTQRWVVVDLETSGLNLNRDQVLSIGAVVIEDGAVDFSQLFERTLQRTDTKLSPSVL-I 94

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPS 121
           HG+    +           +F +F    ++  +A +A FD   +   L+  +      P 
Sbjct: 95  HGLGPSAIAAGSDPVEALLDFMEFVG--DSPLLAFHAPFDQHMLGRALKDSLGYRLAHPF 152

Query: 122 RIIDTLSIARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +D   IA    P +      L+     + + +  R  H A  D+   +++ + +    
Sbjct: 153 --LDVADIAPLLCPEAHIREAGLDDWINHFKLQVGER--HHASADALATAELMLILFSRA 208

Query: 179 SQINFGFKTNEDRFFKEEKKTVP 201
            Q +            + K+   
Sbjct: 209 RQQHIDTPHALQTRLSQWKRRKQ 231


>gi|71738029|ref|YP_276841.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558582|gb|AAZ37793.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320326412|gb|EFW82465.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076]
          Length = 237

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 84/202 (41%), Gaps = 8/202 (3%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ +GAV + D +    + F+  L     K SP A+ +
Sbjct: 38  LRQQRWVVLDLETSGLNMNRDQVLSMGAVVIEDGAIDLGQQFERTLLRVDHKISP-AVLI 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPS 121
           HG+    +           +F +F    ++  +  +A FD   ++  L+  +      P 
Sbjct: 97  HGLAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALKESLGYRLQHPF 154

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                ++    +H + R+  L+   + +G+    R  H A  D+ + +++ + +     +
Sbjct: 155 FDAAEIAPMLCEHANLRHAGLDDWTRFFGLHAEER--HHASADALVTAELALILFSHARR 212

Query: 181 INFGFKTNEDRFFKEEKKTVPN 202
                    +    + ++   +
Sbjct: 213 QQIDSPLRLEEALGQWRRRRQS 234


>gi|302383989|ref|YP_003819812.1| exonuclease RNase T and DNA polymerase III [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194617|gb|ADL02189.1| Exonuclease RNase T and DNA polymerase III [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 252

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 72/224 (32%), Gaps = 31/224 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ-----VFLCPNGRKN 55
           M      R  V D+ET G       + EIG  +++       +        ++ P G   
Sbjct: 1   MSNPGPPRIRVVDLETAGT--GQSDVCEIGWQDVVLGGDGRWSLSAERGARWVNP-GHPI 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           SP+ + +H I DE++ D P +  +        +       AH A F+  +      R+  
Sbjct: 58  SPDTMAVHHILDEWVADAPYWKDVAPAVLR-PDGGVVALAAHRASFEQRY---CSPRLTG 113

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDL------NSLCKRYGITISHRSKHGALLDSHLLSD 169
                      L I       S   L        L    G+       H AL D+++ + 
Sbjct: 114 GAEWICTWKCALRIWPDLSRFSNQMLRYQRRPEGLVHEMGLP-----AHRALPDAYVTAH 168

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL-KRDKPL 212
               ++   S         +   +  E   +P +    +R KP 
Sbjct: 169 HLRDLLNAAS-------VAQLLAWSREPGLLPRVPSGPERGKPW 205


>gi|190572046|ref|YP_001966288.1| unknown [Pseudomonas sp. CT14]
 gi|75707029|gb|ABA25992.1| unknown [Pseudomonas sp. CT14]
          Length = 197

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 20/173 (11%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG+    D + EI  ++       N      + P  +    EA  +H IT++ + 
Sbjct: 16  LDTETTGV-GDGDEVCEITILDASGTPLLN----TLIRPT-QPIPAEATGIHRITNDMVA 69

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
             P++  I  ++    + +    +A+NA FD   ++   QR        +     L  A 
Sbjct: 70  TAPAWPEIAEQYASIVSGR--TVVAYNASFDERLLSQTHQRHGLVAPALATACAMLLYAE 127

Query: 132 R--KHPSSRN--------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              +    R          L    +  G+       H +L D+ +   V   +
Sbjct: 128 WHGEWVEGRYGAWQWRWIKLIEAARACGVL--EDGAHRSLADARMTLGVLRYL 178


>gi|260912289|ref|ZP_05918840.1| exonuclease [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633590|gb|EEX51729.1| exonuclease [Prevotella sp. oral taxon 472 str. F0295]
          Length = 165

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 9/152 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   + + + +  +G V + +       +   + P         + +HG+T  
Sbjct: 4   FAAIDFETA--NFRRESVCSVGLVLVEEGKVVGSYYH-LIQPTPNYFEERCVTVHGLTTA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               +P+F  +++E       +N   +AHN  FD   + A     + +  D      TL 
Sbjct: 61  DTNGQPTFPDVWAEIAPLI--RNKPLVAHNKAFDESCLKAAFAAYDMEYPD-YPFYCTLL 117

Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSK 157
            AR K      +   L ++    G  +     
Sbjct: 118 TARHKLKEAGLADFKLPTVASHCGYELDKHHH 149


>gi|238926233|ref|ZP_04657993.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
 gi|238885913|gb|EEQ49551.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
          Length = 179

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 18/175 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +VFD ETTG  S +D ++ +  V     +  +  +     P  +   P+A +++ I+ 
Sbjct: 3   KILVFDTETTGFRS-DDEVLTLAVVNGTGETMVDSMY----APVRKAEWPDAERINRISP 57

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D     +   E    FN  +   + +N +FD+  +     RI       +   D +
Sbjct: 58  AMVADCDPILTHREELECLFNAPDTLLVGYNIEFDIRLLAQSGIRI-----TNANRHDVM 112

Query: 128 S--IARRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               A RK P +R        L    + Y         HGAL D+      Y KM
Sbjct: 113 LAFSAFRKVPDARRGGYRWWKLTECAEYYRYDWGTTVAHGALADTLATLFCYRKM 167


>gi|254192262|ref|ZP_04898751.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157987457|gb|EDO95233.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 310

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 58/107 (54%), Gaps = 7/107 (6%)

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++  P+F+ I    ++  + +   ++AHNA FD GF+ AE +R          ++ T+ 
Sbjct: 1   MVRGAPTFADIAGALFERLDGK--LFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVR 56

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++R   P  SR+ L++L +R+ +  S  ++H AL D+ L+   + K+
Sbjct: 57  LSRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 101


>gi|313114851|ref|ZP_07800350.1| exonuclease [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622801|gb|EFQ06257.1| exonuclease [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 329

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 9/177 (5%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFS 81
              I+EIGAV++ + +    TF + L P   RK      K+ G+T   L           
Sbjct: 31  RGEIVEIGAVKIDEDANVLDTFSIHLRPRIFRKLQHHIAKVTGLTQADLDKGEPIVQGLR 90

Query: 82  EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-- 139
            F  +    +AE+       DV  +   L   N D   P+   D   +  R+HP      
Sbjct: 91  RFMQWCGP-DAEFAEWGMD-DVPVLKQNLYLCNIDESKPTIWYDLQQVFLREHPRKEGEG 148

Query: 140 -DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKE 195
             L S+  R G+ +  R  H AL D+   +DV  +M+   + +   + T E+     
Sbjct: 149 MTLESVVTRLGLPME-RQFHDALSDTLYTADV-CRMLDLRAGLA-AYPTEEESLRAS 202


>gi|15240840|ref|NP_196388.1| exonuclease family protein [Arabidopsis thaliana]
 gi|9759593|dbj|BAB11450.1| exonuclease-like protein [Arabidopsis thaliana]
 gi|332003813|gb|AED91196.1| exonuclease family protein [Arabidopsis thaliana]
          Length = 468

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 78/178 (43%), Gaps = 13/178 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCP-NGRKNS 56
           M  +++     FD+ETT +  +  R  I+E G++ +     T  R++   + P +    S
Sbjct: 1   MDPEDRSEIAFFDVETT-VPKRGQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLIS 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
             +++ +GI  + +   P F+ I    +D  + +   W  HN  +FD   I      I +
Sbjct: 60  SLSVRCNGIKRDDVVLAPLFADIADTVYDILHGR--IWAGHNILRFDCARIREAFAEIGR 117

Query: 116 DPLDPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            P +P   ID+L +  +K    +    + +L + +G+       H +L D  +  +V 
Sbjct: 118 QPPEPKGAIDSLGLLTQKFGRRAGDMKMATLARYFGLGN---QTHRSLDDVRMNLEVL 172


>gi|227548071|ref|ZP_03978120.1| DNA polymerase III, epsilon subunit [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079869|gb|EEI17832.1| DNA polymerase III, epsilon subunit [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 188

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 82/177 (46%), Gaps = 16/177 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTGL  + D+++ IG V  ++    + +        G      A  LHG+TD+ 
Sbjct: 17  LAVDVETTGLKPERDQLVSIGWV-PVNDRVIDLSGAAHFVVAGASVGNSAT-LHGVTDDD 74

Query: 70  L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLDPSRIIDT 126
           +       + I   F      +  + +AH A+ ++GFI    +  R  +  L    ++DT
Sbjct: 75  VLASGTDIAEIVEHFERAIAGR--KLLAHFAQMELGFIGHAFKQVRGTRWRLREDEVVDT 132

Query: 127 LSIARR------KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            ++ RR       +P   +  L  + +RYG+  ++R+ H AL D+   +++Y+ +  
Sbjct: 133 FALERRHMERMATYPRGEDLRLARVRQRYGLP-AYRN-HNALTDAVACAELYLALTA 187


>gi|227501727|ref|ZP_03931776.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49725]
 gi|227077752|gb|EEI15715.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49725]
          Length = 223

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 15/163 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +  R + FD+ETT  + K+ RI+    V  +D     +     L   G +    A  
Sbjct: 1   MNFDASRMLAFDLETTSANPKDARIVTSALVR-IDGRDVQKV--EHLADPGIEIPQAATD 57

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGIT E    +      +     D      +     I +NA FD+  + +    +  D 
Sbjct: 58  VHGITTEKAQAEGHPHEEVLKNTVDAIKEAWDDGLTLIVYNAAFDLTVLRS----LTGDF 113

Query: 118 LDPSRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKH 158
                + D   I R   K    +  L ++C+ YG+ + +   H
Sbjct: 114 TVTGPVFDPYVIDRVSDKWRKGKRTLGAVCEHYGVELGN--AH 154


>gi|213618879|ref|ZP_03372705.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 178

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 20/160 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL   +  I+EI  ++   +   N      + P  +    EA+ +HGIT+E
Sbjct: 20  YLFIDTETTGL-GDDAEIVEICIIDSHGFIMLN----TLIKPT-KPIPDEAIAIHGITNE 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+++ I     + F      ++ +NA FD+  I        +       ++   S
Sbjct: 74  MVAFAPAWTDICGAVEELFRRFG--FVIYNADFDLRLIRQTYALNERPSEGAPWMLAAHS 131

Query: 129 -IARRKHPSSR-----------NDLNSLCKRYGITISHRS 156
             A + +   R           + L       G+ +  ++
Sbjct: 132 VCAMKLYAEYRGEPGRFNGYKWHKLVDAAAHEGVVVEGKA 171


>gi|315605967|ref|ZP_07880998.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315312249|gb|EFU60335.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 250

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 19/189 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQ--VFLCPNGRKNSPEALKLHGI 65
           FD ETTG+    DR++    V  +D +      +   Q   +L   G +   +A  +HGI
Sbjct: 11  FDTETTGVRPLKDRLVTAALVLRIDGASYRFGVSEPDQVATWLTDPGVEIPEQATAVHGI 70

Query: 66  TDEFLKDKP-SFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLD-- 119
           T    +D+      +  E      E   +    +A NA +D+  +N EL+R      +  
Sbjct: 71  TTAQARDEGRPIEEVLHELAGSIVEHWLRGYPLVAFNASYDITLVNQELRRHRVGSFEER 130

Query: 120 ----PSRIIDTLSIARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               P  ++D L + R+       +  L  +   YG  +S    H A +D  +  DV   
Sbjct: 131 LEGAPMLVVDPLVLDRKLDRFRKGKKTLTEMAPVYGAAVSP-DAHTAEVDVAMTLDVLAG 189

Query: 174 MMVGGSQIN 182
           +     Q+ 
Sbjct: 190 IADKYPQLA 198


>gi|170782319|ref|YP_001710652.1| DNA polymerase III subunit epsilon [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156888|emb|CAQ02056.1| putative exonuclease [Clavibacter michiganensis subsp. sepedonicus]
          Length = 233

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 10/149 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D +  RI+    V L    +          P G +    A  +HG+T E  +
Sbjct: 12  FDLETTGVDVETARIVTACIVVLDAQGEVVERHDWLADP-GVEIPAGAAAIHGVTTERAR 70

Query: 72  DKPSFS-----SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
            +   +      I +   + F  +    + +NA +D+  +N E  R   +PL D   +ID
Sbjct: 71  AEGRDAGAVVLEIVTTIREMF-ARGLALVVYNAPYDLTLLNREAVRHGVEPLRDTGPVID 129

Query: 126 TLSIAR--RKHPSSRNDLNSLCKRYGITI 152
            L I +    +   +  L+   + YG+ +
Sbjct: 130 PLVIDKAVDTYRRGKRTLSVAAEHYGVRL 158


>gi|66047927|ref|YP_237768.1| exonuclease [Pseudomonas syringae pv. syringae B728a]
 gi|63258634|gb|AAY39730.1| Exonuclease [Pseudomonas syringae pv. syringae B728a]
          Length = 237

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 83/202 (41%), Gaps = 8/202 (3%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP A+ +
Sbjct: 38  LREQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISP-AVLI 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPS 121
           HG+    +           +F +F    ++  +  +A FD   ++  L+  +        
Sbjct: 97  HGLAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALKESLGYRLQHAF 154

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                ++    +H + R+  L+   + +G+    R  H A  D+ + +++ + +     +
Sbjct: 155 FDAAEIAPMLCEHANLRHAGLDDWTRFFGLHAEQR--HHASADALVTAELALILFSHARR 212

Query: 181 INFGFKTNEDRFFKEEKKTVPN 202
                    +    + ++   +
Sbjct: 213 QQIDSPLRLEEALGQWRRRRQS 234


>gi|116255725|ref|YP_771558.1| putative exonuclease [Rhizobium leguminosarum bv. viciae 3841]
 gi|115260373|emb|CAK03477.1| putative exonuclease [Rhizobium leguminosarum bv. viciae 3841]
          Length = 262

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 68/181 (37%), Gaps = 21/181 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEA 59
           +K R  V D+ET G +  ND + EIG  +++      +   +    + + P GR  SPE 
Sbjct: 15  HKSRIRVVDLETAG-NGVND-VCEIGWQDVVLGHDGGWRVDDERGSLLVNP-GRPISPET 71

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +H I D  +   P +  I S          A   AH A F+  +              
Sbjct: 72  MAIHHILDAEVATAPFWKEIASSVLRPEGGVIA-LAAHRASFEQRYCTPRF-------TG 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT--ISHR---SKHGALLDSHLLSDVYIKM 174
            +  I T   A R  P      N L +   +   + H      H A+ D+++ +     M
Sbjct: 124 GAAWICTWKCALRLWPELPRFSNQLLRYLRLPEGLVHAIGLPAHRAMPDAYVTAHHLRDM 183

Query: 175 M 175
           +
Sbjct: 184 L 184


>gi|114778579|ref|ZP_01453406.1| hypothetical protein SPV1_06299 [Mariprofundus ferrooxydans PV-1]
 gi|114551168|gb|EAU53728.1| hypothetical protein SPV1_06299 [Mariprofundus ferrooxydans PV-1]
          Length = 179

 Score = 86.4 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 63/176 (35%), Gaps = 18/176 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D ETTGL    D    I    +    +T       + P       EA  +HGITD 
Sbjct: 4   ILVLDTETTGL---GDDAEIIEIGIINGSGETV--MNTLVKPTI-SIPEEATAIHGITDN 57

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDPSRIIDTL 127
            L + P F+ +  E       Q    + +NA +D+  +    ++      L+P+ +   +
Sbjct: 58  DLLNAPVFADVVEELEGLI--QGKILLIYNADYDLRLLRQSARKSKVQINLEPAEVRCVM 115

Query: 128 SIARRKH----PSSRN----DLNSLCKRYG-ITISHRSKHGALLDSHLLSDVYIKM 174
               +      P   N     L +  +R G +       H A+ D      VY  M
Sbjct: 116 LEYAKFFGEWNPKYENWKWQSLANAARRTGYVPAEGMLPHRAIADCVAALHVYRHM 171


>gi|167032729|ref|YP_001667960.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           GB-1]
 gi|166859217|gb|ABY97624.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           GB-1]
          Length = 203

 Score = 86.0 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 65/199 (32%), Gaps = 30/199 (15%)

Query: 9   KIVFDIETTGL--------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             VFD ETTG               I++I A+      +   +F+  + P+G     E  
Sbjct: 5   ICVFDTETTGFPNFKAPSDHPDQPHIVDICALLYTPEGELVDSFEAMVRPDGWSIPNEVA 64

Query: 61  KLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----K 115
            +HGIT+E  L+     +     F + +N+     +AHN  FD   +   L+R       
Sbjct: 65  VIHGITNELALEHGIPEALAIEGFLNIWNQAGLR-VAHNVSFDDRIMRIALKRFQDAWVA 123

Query: 116 DPLDPSRIIDTL------------SIARRKHPSSRNDLNSLCKRYGITISHRSK---HGA 160
           +    S    T                       ++   ++ +      +       H A
Sbjct: 124 ETFRDSPKFCTCQSTTSIVKCPPTEKMIAAGRGKQHKPPTVTEALKF-FTGEDLVGGHRA 182

Query: 161 LLDSHLLSDVYIKMMVGGS 179
             D+   + VY  +    S
Sbjct: 183 RPDAEACARVYFALQAFQS 201


>gi|90018234|gb|ABD83930.1| hypothetical protein [Ictalurus punctatus]
          Length = 216

 Score = 86.0 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 22/175 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68
           +  D+ETTGL++    I+++ A+         R+F V++ P        A ++ G+T   
Sbjct: 35  VFXDLETTGLNTSECDIVQLSAISG------ERSFNVYILPRC-PIDHGASRVTGLTIHS 87

Query: 69  ---FLKDKP----SFSSIFSEFWDFFNE-QNAEWIAHNA-KFDVGFINAELQRINKDPLD 119
               L  +P          + F  F         + HN  +FD   +   +   N     
Sbjct: 88  RKLLLHGQPMQTVPLREALTSFISFLKTFSRPVLVGHNCKRFDRPILLRIMTEFNLLKEF 147

Query: 120 PS---RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                  +DTL ++R      +     L + + +  S+R  H A  D   L +++
Sbjct: 148 QDVVSAYLDTLLLSREMFMLQKYSQQFLVQYF-LQKSYR-AHDATEDVRTLQELF 200


>gi|149926412|ref|ZP_01914673.1| Exonuclease [Limnobacter sp. MED105]
 gi|149824775|gb|EDM83989.1| Exonuclease [Limnobacter sp. MED105]
          Length = 244

 Score = 86.0 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 72/187 (38%), Gaps = 24/187 (12%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAV------ELLDYSKTNRTFQVFLCPNGRK---N 55
           N  R +V D+E++GL+ K DR+I + A       +         TF+V +          
Sbjct: 33  NPDRWVVLDVESSGLNPKKDRLISVAATAIVFDAQRRPRISLTDTFEVVIKQPPEIVDMI 92

Query: 56  SPEALK-----LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
             EA+      +HGI     +         SEF  +     +  IA ++ FD   IN  L
Sbjct: 93  EFEAIDKNNILIHGIGIGAQQKGVKAEVALSEFLRYVGH--SPLIAFHSWFDEILINKAL 150

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLL 167
           +++          +D   +A   H    N    L+   +RYGI    R  H A  D    
Sbjct: 151 RKVLGRTTHRH-WLDLEHLAAVLH--KENHQLPLDVWMQRYGIECEQR--HQAAADVLAT 205

Query: 168 SDVYIKM 174
           + + +K+
Sbjct: 206 AQLLMKL 212


>gi|330970909|gb|EGH70975.1| exonuclease [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 237

 Score = 86.0 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 83/202 (41%), Gaps = 8/202 (3%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP A+ +
Sbjct: 38  LREQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISP-AVLI 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPS 121
           HG+    +           +F +F    ++  +  +A FD   ++  L+  +        
Sbjct: 97  HGLAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALKESLGYRLQHAF 154

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                ++    +H + R+  L+   + +G+    R  H A  D+ + +++ + +     +
Sbjct: 155 FDAAEIAPMLCEHANLRHAGLDDWTRFFGLHAEQR--HHASADALVTAELALILFSHARR 212

Query: 181 INFGFKTNEDRFFKEEKKTVPN 202
                    +    + ++   +
Sbjct: 213 QQIDSPLRLEEALGQWRRRRQS 234


>gi|311745732|ref|ZP_07719517.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1]
 gi|126575175|gb|EAZ79525.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1]
          Length = 1428

 Score = 86.0 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 23/219 (10%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL    +          R++++      +           + P G      
Sbjct: 2   YLIFDTETTGLPRDYNAPMSDVDNWPRLVQLAWQLHDEKGNLISNHNYIIRPEGFTIPYN 61

Query: 59  ALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           A K+HGI T   LK+      I    ++   ++    + HN +FD+  + +E  R     
Sbjct: 62  AEKVHGISTKRALKEGHDLKQILG-IFEGDVKKTKYLVGHNVEFDINVVGSEYLRAEATM 120

Query: 118 LDPSRIIDT--LSIARRKHPSSRN------DLNSLCKR-YGITISHRSKHGALLDSHLLS 168
              +  +DT  +S      P  R        L  L ++ +G        H A  D    +
Sbjct: 121 PLTADQLDTKDISTEFCAIPGGRGGKFKWPTLTELHQKLFGKGFGD--AHDAAYDVDATA 178

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207
             +  ++  G Q         +  ++  K    N +  K
Sbjct: 179 RCFFGLITQGVQAPEEGIAISEVIYEAPKLDEANFAQAK 217


>gi|330954936|gb|EGH55196.1| exonuclease [Pseudomonas syringae Cit 7]
          Length = 237

 Score = 86.0 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 84/204 (41%), Gaps = 8/204 (3%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL 60
               + R +V D+ET+GL+   D+++ +GAV + D +    + F+  L     K SP A+
Sbjct: 36  TPLREQRWVVLDLETSGLNMNRDQVLSMGAVVIEDGAIDLGQQFERTLLRVDHKISP-AV 94

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLD 119
            +HG+    +           +F +F    ++  +  +A FD   ++  L+  +      
Sbjct: 95  LIHGLAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALKESLGYRLQH 152

Query: 120 PSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           P      ++    +H + R+  L+   + +G+    R  H A  D+ + +++ + +    
Sbjct: 153 PFFDAAEIAPMLCEHANLRHAGLDDWTRFFGLHAEER--HHASADALVTAELALILFSHA 210

Query: 179 SQINFGFKTNEDRFFKEEKKTVPN 202
            +         +    + ++   +
Sbjct: 211 RRQQIDSPLRLEEALGQWRRRRQS 234


>gi|330898819|gb|EGH30238.1| exonuclease [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 237

 Score = 86.0 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 83/202 (41%), Gaps = 8/202 (3%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP A+ +
Sbjct: 38  LREQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISP-AVLI 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPS 121
           HG+    +           +F +F    ++  +  +A FD   ++  L+  +        
Sbjct: 97  HGLAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALKESLGYRLQHAF 154

Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                ++    +H + R+  L+   + +G+    R  H A  D+ + +++ + +     +
Sbjct: 155 FDAAEIAPMLCEHANLRHAGLDDWTRFFGLHAEQR--HHASADALVTAELALILFSHARR 212

Query: 181 INFGFKTNEDRFFKEEKKTVPN 202
                    +    + ++   +
Sbjct: 213 QQIDSPLRLEEALGQWRRRRQS 234


>gi|207092434|ref|ZP_03240221.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 160

 Score = 86.0 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG       I+EIGAV++      NR F+  +    +       +L GIT E  
Sbjct: 75  FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
            + PS      E   F    N+ ++AHNA F
Sbjct: 132 LNAPSAHEALQELRLFLG--NSVFVAHNANF 160


>gi|213964467|ref|ZP_03392667.1| DNA polymerase III subunit epsilon [Corynebacterium amycolatum
           SK46]
 gi|213952660|gb|EEB64042.1| DNA polymerase III subunit epsilon [Corynebacterium amycolatum
           SK46]
          Length = 226

 Score = 86.0 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 11/174 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +  R + FD+ETTG D +  +I+    V L +  K + T    L   G +    A 
Sbjct: 1   MHNFDPRRMLAFDLETTGTDPRTCKIVTSALVRLTEQGK-DSTI--MLADPGVEIPQAAS 57

Query: 61  KLHGITDE-FLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKD 116
            +HGIT E    +      + ++               +A+NA +D+  + ++      D
Sbjct: 58  DVHGITTEKARAEGRPHDEVLADTIAGLKAAWRDGLTVVAYNAAYDLTVLRSQDPNFTVD 117

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            L     +  L          +  L  + + Y + +     H A  D+   + +
Sbjct: 118 GLVVDPFV--LDNYFDPDRREKRTLTDVSRHYQVRLDG--AHDATEDALAAARI 167


>gi|85814043|emb|CAH05238.1| DNA polymerase III, epsilon subunit [Micromonospora echinospora]
          Length = 386

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 8/133 (6%)

Query: 28  EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87
           E+  V L D     R +   + P+ R   P++  +HGI+    +  P+F  +  +  +  
Sbjct: 2   EVAVVHLDDQGNLTREWCSLVNPD-RDLGPQS--VHGISAAEARRAPTFGQLAGQIAELL 58

Query: 88  NEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCK 146
            ++    +AHN  FD  F+ AE +R+    P+D +  + T+ +A    P++   L   C+
Sbjct: 59  KDR--VVVAHNLSFDARFLTAEFERLGIAVPIDAASGLCTMRLASHFLPAAGRGLRD-CR 115

Query: 147 RYGITISHRSKHG 159
           R  + +     H 
Sbjct: 116 RL-LDLPDHQAHS 127


>gi|257483040|ref|ZP_05637081.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289624800|ref|ZP_06457754.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289650623|ref|ZP_06481966.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298489203|ref|ZP_07007222.1| Exonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298156285|gb|EFH97386.1| Exonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330871170|gb|EGH05879.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330891299|gb|EGH23960.1| exonuclease [Pseudomonas syringae pv. mori str. 301020]
 gi|331011724|gb|EGH91780.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 237

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 84/203 (41%), Gaps = 10/203 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP A+ +
Sbjct: 38  LRQQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP-AVLI 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+    +      +    +F +F  E  +  +  +A FD   ++  L+  + D      
Sbjct: 97  HGLAPSAIAAGSEPAEALLDFMEFVGE--SPILGFHAPFDQHMLSRALKE-SLDYRLRHP 153

Query: 123 IIDTLSIARRKHPSS--RN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             D   IA      +  R+  L+   + +G+    R  H A  D+ + +++ + +     
Sbjct: 154 FFDAAEIAPMLCEQANLRHAGLDDWTQFFGLHAEER--HNASADALVTAELALILFSHAR 211

Query: 180 QINFGFKTNEDRFFKEEKKTVPN 202
           +         +    + ++   +
Sbjct: 212 RQQIDSPRLLEERLGQWRRRKQS 234


>gi|315650719|ref|ZP_07903774.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487023|gb|EFU77350.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 220

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 68/180 (37%), Gaps = 16/180 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRI------IEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEA 59
           M+ IV D+E   ++ K   +      IEIGA+ L +  +   +F+ ++ P    +  P  
Sbjct: 1   MKHIVVDLEMNSVEKKYKNLDCTMETIEIGAIMLDENYQEISSFRTYVKPEYNNRIRPLI 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRINKDP 117
            +L GIT + + + P F      F ++      + +  A +       +     +  K  
Sbjct: 61  SRLTGITYDMVMNAPKFDEALKMFSNWCLGVSDDIKIYAWSENDYKQILKEISLKKYKSS 120

Query: 118 LDPSRIIDT------LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           LD  R+  T           +     +  L +     G+    R  H AL D+   + ++
Sbjct: 121 LDEERVYLTEWHDFQAEFDTKLGFEKQLSLKTALDMAGVDFLGRE-HSALDDARNTAKLF 179


>gi|330985867|gb|EGH83970.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 237

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 84/203 (41%), Gaps = 10/203 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP A+ +
Sbjct: 38  LRQQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP-AVLI 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+    +      +    +F +F  E  +  +  +A FD   ++  L+  + D      
Sbjct: 97  HGLAPSAIAAGCEPAEALLDFMEFVGE--SPILGFHAPFDQHMLSRALKE-SLDYRLRHP 153

Query: 123 IIDTLSIARRKHPSS--RN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             D   IA      +  R+  L+   + +G+    R  H A  D+ + +++ + +     
Sbjct: 154 FFDAAEIAPMLCEQANLRHAGLDDWTQFFGLHAEER--HNASADALVTAELALILFSHAR 211

Query: 180 QINFGFKTNEDRFFKEEKKTVPN 202
           +         +    + ++   +
Sbjct: 212 RQQIDSPRLLEERLGQWRRRKQS 234


>gi|330721640|gb|EGG99654.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC2047]
          Length = 224

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 78/181 (43%), Gaps = 17/181 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--NRTFQVFLCPNGRKNSPEA 59
              +++  +V D+ETT LD+ N  ++ IG V +   S    +          G     ++
Sbjct: 34  THFDQLEFLVVDLETTSLDADNGEVVSIGWVPVKSGSIQLADAEHHFSKVDAG---VGQS 90

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +H I D  L D  S ++I + F           + H+A+ D+ F+N   +++   PL 
Sbjct: 91  AVIHHIRDSELHDAASVTAIMNRFLAV--AAGKVLVFHHAELDMAFLNRLSKKLYSVPLL 148

Query: 120 PSRIIDTLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            + I+DTL + RR+     +        L+   +RY +       H AL D+   +++ +
Sbjct: 149 -APIVDTLQLERRRLLRKESALAPGVLRLHRCRQRYNLP--DYPGHDALTDAIATAELLV 205

Query: 173 K 173
            
Sbjct: 206 A 206


>gi|115351259|ref|YP_773098.1| exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria
           AMMD]
 gi|115281247|gb|ABI86764.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria
           AMMD]
          Length = 276

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 79/225 (35%), Gaps = 32/225 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKT----NRTFQVFLCPNGRKNSPEAL 60
           M+  + D ETTG+ + +D  I IG   VE+   S         +     P      P+A 
Sbjct: 20  MKVAIIDTETTGV-AAHDEPISIGILLVEIEPGSGVLVQEIGRYHGLREP-CVPIHPKAQ 77

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +HG+T   L  K       +      NE +   IAHNA+FD   +         D    
Sbjct: 78  AVHGMTAADLSGKVLD---LAWITSLINEAD-VLIAHNAQFDARMLAVVC-----DAGSA 128

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---------- 170
                +L          R  L+S+C+ YG+    R  H AL D   L  V          
Sbjct: 129 KSWRCSLQQFPWPAAVGRKKLDSVCEFYGVVKQLR--HDALGDCQALLAVLLIHTGKTTR 186

Query: 171 ---YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
              Y+ +++  + +                +  P   +L+  +P+
Sbjct: 187 SRTYLALLLAKAPVVLDAAPQAAMGRSPAYQQPPAYRMLEPRQPV 231


>gi|297563874|ref|YP_003682847.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848323|gb|ADH70341.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 277

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 66/161 (40%), Gaps = 17/161 (10%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +    + FD ET+  D     ++    V   D     RT+   + P  R+   +A+ +H
Sbjct: 52  WHTTPLLGFDTETSSRDPDTAFLVSAALV---DREGKARTW--LVDPGPREIPADAVAVH 106

Query: 64  GITDEFLK-DKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPL- 118
           GI+ E  + +         E      +Q       +  NA +D+  ++ E++R    PL 
Sbjct: 107 GISTERARAEGRPAGECLEEIGQALADQLSSGQGLVVFNAPYDLRVLSGEMRRHGLTPLA 166

Query: 119 -----DPSRIIDTLSIARRKHP--SSRNDLNSLCKRYGITI 152
                  + ++D L I R   P    + +L ++C+ YG+ +
Sbjct: 167 ERLSGPLAPVVDPLVIDRGVEPYRRGKRNLGAMCEYYGVEL 207


>gi|124002816|ref|ZP_01687668.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134]
 gi|123992044|gb|EAY31431.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134]
          Length = 1403

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 69/198 (34%), Gaps = 25/198 (12%)

Query: 9   KIVFDIETTGLD-----SKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            ++FD ETTGL         D     R+++I         K      + + P G      
Sbjct: 2   YLIFDTETTGLPKDFNAPHTDVDNWPRLVQIAWQLHDYNGKLVSAENMIVKPEGFTIPFN 61

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
           A K+HGI+ E  L++    + +  +F      ++   I HN  FDV  + AE  R   D 
Sbjct: 62  AEKVHGISTEIALEEGLPLNEVLEKFAVDI-ARSELIIGHNIGFDVNIMGAEYVRTTVDS 120

Query: 117 PLDPSRIIDTLSIARRKH------PSSRND---LNSL-CKRYGITISHRSKHGALLDSHL 166
            L      DT S    ++         +     L  L  K +  +      H A  D   
Sbjct: 121 KLHEVPTYDTKSEETAEYVGIQGGRGGKFKWPTLTELHTKLFSESFDD--AHDAAYDVLA 178

Query: 167 LSDVYIKMMVGGSQINFG 184
            +  Y  ++  G     G
Sbjct: 179 TARCYFGLISIGIAPPLG 196


>gi|154483908|ref|ZP_02026356.1| hypothetical protein EUBVEN_01613 [Eubacterium ventriosum ATCC
           27560]
 gi|149735399|gb|EDM51285.1| hypothetical protein EUBVEN_01613 [Eubacterium ventriosum ATCC
           27560]
          Length = 334

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 86/234 (36%), Gaps = 25/234 (10%)

Query: 7   MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSK-TNRTFQVFLCPN-GRKN 55
           M  IV D+E    +              IIEIGAV + D  K    +FQ  + P   +K 
Sbjct: 2   MDYIVMDLEWN-QNPYGKSHCHTDLTFEIIEIGAVRVSDDRKTIVDSFQQVIKPRVFKKL 60

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             +  ++   T+E L D   F  +  +F ++  + +  +       D+  +   ++  N 
Sbjct: 61  HYKIQEITHFTEEELNDGKDFRKVIRDFLEWCGD-DYIFCTW-GSMDLTELQKNMKHYNL 118

Query: 116 DPLDPSR--IIDTLSIARRKHPSS--RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           + +       +D   +   ++     + +L S  +   I   H   H AL D++  + + 
Sbjct: 119 ERVLDFPLFYVDLQKMFSLRYDDGHMKRNLTSAVEYLNIQEEHE-FHRALSDAYYTARIL 177

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR--ITKEELDE 223
             M     +      T      KEE+  V           L TR  +TK+EL  
Sbjct: 178 QSMDYDKYKDRLSIDTFYSPRIKEEEIFVR----FDEYTKLVTREFLTKDELFA 227


>gi|317969731|ref|ZP_07971121.1| putative DNA polymerase III, epsilon subunit [Synechococcus sp.
           CB0205]
          Length = 302

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 20/170 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           ++ D ETTGL     R IE+GAV   +            +       S  A  ++GI   
Sbjct: 74  LILDTETTGLSPAEHRCIEVGAVLFSVPDRSVLSQVSFLMPCT----SNAAEAVNGIAPA 129

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +    + +  + F       +   +AHNA FD  +       +   P      + ++ 
Sbjct: 130 LTQRPQPWQAGLACFEAMVEAAD-VLLAHNAAFDQQWFG-----LGSLPALSKPWLCSME 183

Query: 129 IARRKHPSSR-----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             R   P  R       +  L   YG+ +   + H AL D   L+ V+ +
Sbjct: 184 DIR--WPQERQLRSTPSVRDLALAYGVPVW--AAHRALTDCIYLAQVFER 229


>gi|117621105|ref|YP_856588.1| DNA polymerase III subunit epsilon [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562512|gb|ABK39460.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 208

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 7/174 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETT LD     I+ IGAV +  +   T     + +       S  ++ +HG+  
Sbjct: 31  WVALDFETTSLDPAQAEIVAIGAVRIQGNRVLTGEALSIRVQ-APASLSEHSVVIHGLRH 89

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT- 126
           + L+   +  +       F   +  E + ++  +D+  +N   QR     L    I  + 
Sbjct: 90  QDLQQGMTLEAALRLLLAFIGPR--ELVGYHIAYDLRILNLACQRCWGLTLAQRGIEVSR 147

Query: 127 --LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                  R++P +  DL+       I +     H AL D+   + +++++  GG
Sbjct: 148 LYHDHLYRRYPDAAIDLHLAAISSHIGLPTLPAHDALSDAITAALIFLRLTRGG 201


>gi|323344490|ref|ZP_08084715.1| DNA polymerase III, epsilon subunit [Prevotella oralis ATCC 33269]
 gi|323094617|gb|EFZ37193.1| DNA polymerase III, epsilon subunit [Prevotella oralis ATCC 33269]
          Length = 899

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 83/224 (37%), Gaps = 22/224 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG-IT 66
            ++FD ETTGL    D I++I AV +          F+VF+    R+   +   +   I 
Sbjct: 518 IVIFDTETTGLSVFEDDILQIAAVTICRGEVVRGSEFKVFIA-TEREIPRKLGDIDNPII 576

Query: 67  DEFLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122
           +E   ++    +     F ++  ++    + HNA +D   ++  L+R            +
Sbjct: 577 EEMKHNRLLGHAEALQLFMNYVGDR--TLLGHNADYDYHILDYNLRRYLPQVSLAERCPK 634

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLL----SDVYIK---M 174
             D+L + R   P  R   L  L     + +   + H A  D H      +  Y K   +
Sbjct: 635 YFDSLKLIRLLEPDLREYKLKYLLSV--LHLEGENSHLADADVHATCNVVAHCYRKAADI 692

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
           +    Q     +  E     E  +       L+  + L+ R T+
Sbjct: 693 IGSQRQFIVQKRVQE---RAEVLRKRYVQQYLQARRTLYLRPTE 733


>gi|297806807|ref|XP_002871287.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317124|gb|EFH47546.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 468

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 79/178 (44%), Gaps = 13/178 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCP-NGRKNS 56
           M  +++     FD+ETT + ++  R  I+E G++ +     T  R++   + P +    S
Sbjct: 1   MDPEDRSEIAFFDVETT-VPNRGQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLIS 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
             +++ +GI  + +   P F+ I    +D  + +   W  HN  +FD   I      I +
Sbjct: 60  SLSVRCNGIKRDDVVLAPLFADIADTVYDILHGR--IWAGHNILRFDCARIREAFAEIGR 117

Query: 116 DPLDPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            P +P   ID+L +  ++    +    + +L + +G+       H +L D  +  +V 
Sbjct: 118 QPPEPKGAIDSLGLLTQQFGRRAGDMKMATLARYFGLGN---QTHRSLDDVRMNLEVL 172


>gi|227832929|ref|YP_002834636.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453945|gb|ACP32698.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 233

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 15/163 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +  R + FD+ETT +  K  RI+    V  +D  + ++     L   G +   EA K
Sbjct: 11  MNFDATRMLSFDLETTSVKPKEARIVTSALVR-IDGREVDKR--EMLADPGVEIPEEAAK 67

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGIT E    +      +  E  D      ++    I +NA +D+  + A    +  D 
Sbjct: 68  IHGITTEKARAEGRPHEEVLKETVDSIYQAWDEGLTLIVYNAAYDLSVLRA----LTGDF 123

Query: 118 LDPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
                + D   +   + K    +  L  +   YG+ +S+   H
Sbjct: 124 TVNGPVFDPFVIDRVKDKWRKGKRTLEEVSAHYGVELSN--AH 164


>gi|295690334|ref|YP_003594027.1| exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC
           21756]
 gi|295432237|gb|ADG11409.1| Exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC
           21756]
          Length = 297

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 68/207 (32%), Gaps = 20/207 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCPNGRKNSPEALKLHG 64
           +  D+ETTGLD K   IIE+  +           +    F  F  P+G    PE   L G
Sbjct: 44  LFVDVETTGLDPKQHEIIELAMIPFRYGLDGVIYEVLEPFHGFRQPSG-PIPPEITALTG 102

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRI 123
           I D  +  +    SI  +         A  IAHNA FD  F+          P     R 
Sbjct: 103 IDDAMVAGQ----SINPDAVAAAAAPAALIIAHNAGFDRRFLERFCATFTTKPWACSMRE 158

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +D    +   H  ++  L  L    G       +H A  D     ++    M    +   
Sbjct: 159 VD---WSAEGHEGAK--LVWLAAGAGFFYD---RHRATNDCLAAIELLATEMQRSKRTAL 210

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDK 210
                E     + +    N     +D+
Sbjct: 211 S-HLLERARASQWRIWAQNSPFAMKDR 236


>gi|282878339|ref|ZP_06287131.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310]
 gi|281299525|gb|EFA91902.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310]
          Length = 904

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 12/172 (6%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64
           +   +VFD ETTGL+   D I++I AV +         +F VF+    R    +  ++  
Sbjct: 519 QQDIVVFDTETTGLNVFEDDIVQIAAVRMRQGKVVPGSSFVVFME-TDRDIPQQLGEIEN 577

Query: 65  -ITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119
            +  E  +    S +     F D+    ++  + HNA +D   ++  LQR          
Sbjct: 578 PLIAEMQRHVLHSHAEGLQMFMDYVG--DSMLLGHNADYDYHILDFNLQRYLPAISLKEQ 635

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             R +D+L + R   P+ R   L  L     + +   + H A  D     +V
Sbjct: 636 CPRYLDSLKLVRLLEPNLREYKLKHLLSV--LHLEGENAHLADADVDATCNV 685


>gi|206968801|ref|ZP_03229756.1| exonuclease family protein [Bacillus cereus AH1134]
 gi|206735842|gb|EDZ53000.1| exonuclease family protein [Bacillus cereus AH1134]
          Length = 281

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 15/181 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR----IIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP 57
            KN    IVFDIE              I++IGAV++ +   K    F   + P+ R  + 
Sbjct: 1   MKNATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEIGTMKIIEEFSELVKPSAR-LTR 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              KL GIT + L     F  I  +F  F   + + +++   + D  F++ +      + 
Sbjct: 59  HTTKLTGITKKDLMGVEKFPQIIEKFIQFIG-EGSIFVSWGKE-DYRFLSHDCTLYGVEC 116

Query: 118 --LDPSRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             ++    ID    +  A  +       L    ++  +T   +  H AL D+   +++ +
Sbjct: 117 PSIEKENRIDLQKFVFQAYEELFEHTPSLQFAVEQLALTWEGKQ-HRALADAENTANILL 175

Query: 173 K 173
           K
Sbjct: 176 K 176


>gi|228912179|ref|ZP_04075894.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           IBL 200]
 gi|228847516|gb|EEM92455.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           IBL 200]
          Length = 273

 Score = 85.3 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++ +   K    F   + P+ R  +    KL GIT E L     F  I  +F
Sbjct: 18  EIVDIGAVKIEIGTMKIIEEFSELVKPSAR-LTRHTTKLTGITKEDLIGVEKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIIDT---LSIARRKHPSSR 138
             F   ++  +++   + D  F++ +      +   ++    ID    +  A  +     
Sbjct: 77  IQFIG-EDCIFVSWGKE-DYRFLSHDCALHGVECPSIEKENRIDLQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L    ++ G+T   +  H AL D+   +++ +K
Sbjct: 135 PSLQFAVEQLGLTWEGKQ-HRALADAENTANILLK 168


>gi|262182582|ref|ZP_06042003.1| DNA polymerase III subunit epsilon [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 223

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 15/163 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +  R + FD+ETT +  K  RI+    V  +D  + ++     L   G +   EA K
Sbjct: 1   MNFDATRMLSFDLETTSVKPKEARIVTSALVR-IDGREVDKR--EMLADPGVEIPEEAAK 57

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGIT E    +      +  E  D      ++    I +NA +D+  + A    +  D 
Sbjct: 58  IHGITTEKARAEGRPHEEVLKETVDSIYQAWDEGLTLIVYNAAYDLSVLRA----LTGDF 113

Query: 118 LDPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
                + D   +   + K    +  L  +   YG+ +S+   H
Sbjct: 114 TVNGPVFDPFVIDRVKDKWRKGKRTLEEVSAHYGVELSN--AH 154


>gi|212212262|ref|YP_002303198.1| exodeoxyribonuclease I [Coxiella burnetii CbuG_Q212]
 gi|212010672|gb|ACJ18053.1| exodeoxyribonuclease I [Coxiella burnetii CbuG_Q212]
          Length = 458

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 89/270 (32%), Gaps = 40/270 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEA 59
           +  ++   + +D+ETTGL+   D+II+  A+   +        ++ +   P+    SPEA
Sbjct: 1   MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILIRLNPD-VIPSPEA 59

Query: 60  LKLHGIT-DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDP 117
           + +H  + D+ L  K        E     N      + +N   FD  F+     R    P
Sbjct: 60  MIIHRFSIDQMLSGKAEI-EAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPP 118

Query: 118 LDP-----SRIIDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALL 162
                    R +D   +    +    N           L +L K     ++    H A++
Sbjct: 119 YTHQYDNFCRRMDLYPLTILYYLFKPNALNWPDPFDLKLENLSKA--NQLAEGQAHNAMV 176

Query: 163 DSH---LLSDVYIKMMVGGS-QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
           D      L+ + +         I +  K  E +   +    + +      +  L   +  
Sbjct: 177 DVEASVALAKLLMNQEAMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQGVFG 236

Query: 219 EELD---------EHDKTIQTLGKNAIWDR 239
            +L          +H+          +W R
Sbjct: 237 AQLAYQAPVICLGQHNHY----KNQCLWLR 262


>gi|218231753|ref|YP_002368350.1| exonuclease [Bacillus cereus B4264]
 gi|296504043|ref|YP_003665743.1| exonuclease [Bacillus thuringiensis BMB171]
 gi|218159710|gb|ACK59702.1| exonuclease family protein [Bacillus cereus B4264]
 gi|296325095|gb|ADH08023.1| exonuclease [Bacillus thuringiensis BMB171]
          Length = 281

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 15/181 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR----IIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP 57
            KN    IVFDIE              I++IGAV++ +   K    F   + P+ R  + 
Sbjct: 1   MKNATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEIGTMKIIEEFSELVKPSAR-LTR 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              KL GIT + L     F  I  +F  F   + + +++   + D  F++ +      + 
Sbjct: 59  HTTKLTGITKKDLMGVEKFPQIIEKFIQFIG-EGSIFVSWGKE-DYRFLSHDCTLYGVEC 116

Query: 118 --LDPSRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             ++    ID    +  A  +       L    ++  +T   +  H AL D+   +++ +
Sbjct: 117 PSIEKENRIDLQKFVFQAYEELFEHTPSLQFAVEQLALTWEGKQ-HRALADAENTANILL 175

Query: 173 K 173
           K
Sbjct: 176 K 176


>gi|78777984|ref|YP_394299.1| exonuclease [Sulfurimonas denitrificans DSM 1251]
 gi|78498524|gb|ABB45064.1| Exonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 247

 Score = 84.9 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 32/173 (18%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--NRTFQVFLCPNGRKNSPEALKLHGI 65
           R I+ D ETTG+  + DR+I++G + L +      N  F   +       S  A++ HGI
Sbjct: 4   RYIILDTETTGI-GEEDRVIQLGFIVLGEREIEVQNEFFSTSV-----PISFGAMETHGI 57

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           T E L  KP       +    +  +++N   I HNAKFD+  +  E            R+
Sbjct: 58  TPEMLDGKPLCKDSTSYRRLNELNSDEN-YLIIHNAKFDIDMLQKE------GFKTQMRV 110

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRS------------KHGALLD 163
           IDTL +A+   P    + L     RY + +                 H A+ D
Sbjct: 111 IDTLRVAKHLLPDEEAHRLQYF--RYKMELYKEEQKEADELNIVIKAHDAIGD 161


>gi|300781342|ref|ZP_07091196.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC
           33030]
 gi|300533049|gb|EFK54110.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC
           33030]
          Length = 194

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 16/177 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D+ETTGL      ++ IG V + D          F+      +  ++  +HG+TD+ 
Sbjct: 23  LAVDVETTGLKPDKHHLVSIGWVPVTDRVIDLSGAGYFVL--AGASVGDSATVHGVTDDD 80

Query: 70  L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRIIDT 126
           + ++          F      +    +AH A+ + GFI+A  +R+           + DT
Sbjct: 81  IAREGVDAQVALDAFLQAI--EGRALLAHFAQMETGFIDALHKRVYGKRFRLREDEVEDT 138

Query: 127 LSIARR------KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           LS+ RR       +P   +  L  +  RY +       H AL D+   +++Y+ +  
Sbjct: 139 LSLERRHMERMATYPRGEDLRLARVRSRYNLP--DYGNHNALTDALACAELYLALTA 193


>gi|320087113|emb|CBY96881.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 235

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 72/195 (36%), Gaps = 35/195 (17%)

Query: 3   RKNKMRKIVFDIETTGL--------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           R      ++ D ETTGL         S  D     GA+               + P+ + 
Sbjct: 59  RWINKNIVIVDTETTGLGREAEIIEISIIDC---TGAIL----------LNTLIKPS-KD 104

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRI 113
              EA ++HGITDE ++D PS+  +  +  +  +     W+A+NAKFD   +  A   R+
Sbjct: 105 IPAEATEIHGITDEMVEDAPSWKEMLPQVLELISHG---WVAYNAKFDARMLEQASGSRV 161

Query: 114 NKDPLDPSRIIDTL------SIARRKHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSH 165
           + D          L         +++       L                + H AL D +
Sbjct: 162 DPDYFGVPECAMQLYAEYNGEWDKKRRKYKWKKLTDAATSLDAWPEEIDENPHRALYDCY 221

Query: 166 LLSDVYIKMMVGGSQ 180
           L   V I+ + GG +
Sbjct: 222 LTLGV-IRSIAGGKK 235


>gi|152994734|ref|YP_001339569.1| exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1]
 gi|150835658|gb|ABR69634.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1]
          Length = 220

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 15/163 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V DIET+GLD K D I+  G V +        T +  +  + +    +++ +H ITD 
Sbjct: 28  YLVLDIETSGLDPKQDHIVSFGWVCIHKGVIELDTARHIVLDSAQ--IGDSVGIHMITDS 85

Query: 69  FLKDKPSFSS-IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            ++ +      +         E+    + H+A  ++GF+    Q     P      +DTL
Sbjct: 86  DVQQQGKKQESVLRYLRHLLRER--VLVMHHAPMELGFLKHAWQ-TEALPSFSVSWLDTL 142

Query: 128 SIARRK-------HPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +I R K              L +  +RYG+       H AL D
Sbjct: 143 AIERTKANRSQQPIQDGGFRLGACRERYGLP--DYQGHDALTD 183


>gi|303240238|ref|ZP_07326757.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
           cellulolyticus CD2]
 gi|302592148|gb|EFL61877.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
           cellulolyticus CD2]
          Length = 223

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 22/184 (11%)

Query: 9   KIVFDIE-TTG-----------LDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
            IV D+E +TG           L  K       II+IGA+ L    K    F  F+ P  
Sbjct: 37  YIVLDLEFSTGYKYVNKDYAKTLFPKYEKRPAEIIQIGAIMLNHNYKIIDKFNKFITPCI 96

Query: 53  -RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            +K +    +L G+ DE LK+  SF      F  +  ++       +   D        +
Sbjct: 97  YQKINKYVTELTGLNDENLKNNISFVECMDSFEKWIGKKEYILCGWSNS-DQKVFEDNFK 155

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             ++     S  ++ L I +  +P  +  L        I  S +  H AL D+   ++++
Sbjct: 156 YHSQK---CSLNLNMLDIQKIFNPEKQISLKKAIDELNIQKS-KPFHNALNDAEYTANIF 211

Query: 172 IKMM 175
            K++
Sbjct: 212 QKIV 215


>gi|148242440|ref|YP_001227597.1| DNA polymerase III epsilon subunit [Synechococcus sp. RCC307]
 gi|147850750|emb|CAK28244.1| DNA polymerase III epsilon subunit [Synechococcus sp. RCC307]
          Length = 264

 Score = 84.9 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 16/168 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           ++ D ETTGLD + D+++E+GA+   +            L P        A  L+GI   
Sbjct: 41  LILDTETTGLDPEVDQVLEVGAILFSVPQRAVLAQLSFLL-PVEAN---AAEPLNGIRAG 96

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +    +         F +      +AHNA FD  +           P  P   + T+ 
Sbjct: 97  ATQAPQPWQPSLQLLQQFASCAQLA-VAHNAAFDRQWFGH-----GALPDLPLPWLCTME 150

Query: 129 ---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                  +    R  +  L   YG+ +   + H AL D   L+ V+ +
Sbjct: 151 DIHWPADRLLRPRPSVRDLALAYGVPVW--AAHRALTDCIYLAQVFER 196


>gi|297181362|gb|ADI17552.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [uncultured alpha proteobacterium HF0130_06E21]
          Length = 309

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 22/173 (12%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--------FQVFLCPNGRKNSPEA 59
           R +V D+ETTGL  + D ++++  +      +T R         F+    P     S EA
Sbjct: 48  RALVVDVETTGLSQETDDVMQLAMLPFDYEVETGRILTVYKDEAFEALREP-AAPISEEA 106

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPL 118
             + GIT + +      +   +   +     NA+ + AHNAKFD              P 
Sbjct: 107 SIITGITADMVAGTTIDAEAVAGMVE-----NADLVIAHNAKFDRPMAEKNWDCFVNKPW 161

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +  +D ++  R+ + + +  L+ L  ++G        H AL D      + 
Sbjct: 162 ACT--LDGVNWLRQGYSAGK--LDYLGMQFGWFYDG---HQALADCEACLALL 207


>gi|311894879|dbj|BAJ27287.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 257

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 15/154 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG+D + DRI+    V     + T  T + +L   G      A  +HGI+DE ++
Sbjct: 15  FDTETTGVDVERDRIVSAALVVQSAPAGTA-TVRTWLADPGVPIPESARAVHGISDERVR 73

Query: 72  --DKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLDPS----- 121
              +P   ++  E      EQ       +  NA +D+  ++ EL+R     L  +     
Sbjct: 74  AHGRPP-RAVALEVARALAEQARAGVPLVVMNAPYDLTLLDRELRRHRAGSLAEALDGAE 132

Query: 122 ---RIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
                   L     ++   R  L  LC  YG+ +
Sbjct: 133 LLVLDPRVLDKQADRYRKGRRTLTDLCAHYGVAL 166


>gi|270208409|ref|YP_003329183.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Klebsiella pneumoniae]
 gi|283826841|ref|YP_003377712.1| conserved hypothetical plasmid protein [Shigella sonnei]
 gi|218546445|gb|ACK98834.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Klebsiella pneumoniae]
 gi|283466733|emb|CBI12389.1| conserved hypothetical plasmid protein [Shigella sonnei]
 gi|301333093|gb|ADK71040.1| hypothetical protein pHK01_007 [Escherichia coli]
          Length = 282

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 15/168 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD      +EIG  +          F+  L P       +A  +HGI+++
Sbjct: 104 PLFLDTETTGLD-NTAEALEIGLTDAAGQVV----FETRLKPTVA-IGAQAAAVHGISEQ 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            L   PS++ +  +      ++    I  NA+FD+  +       +   D L+   +   
Sbjct: 158 ALCGAPSWTDMARQLRHAIGDR--PVIIFNARFDIRILKQTAAAHSDPADWLEEMTVYCA 215

Query: 127 LSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +A   + ++       L S   + G+T      H A++D+ + + V
Sbjct: 216 MELAAGYYGATNRYGTISLASAASQAGLTWEGL-AHSAIVDARMAAGV 262


>gi|326941253|gb|AEA17149.1| exonuclease [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 281

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 15/181 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR----IIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP 57
            KN    IVFDIE              I++IGAV++ +   K    F   + P+ R  + 
Sbjct: 1   MKNATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEIGTMKIIEEFSELVKPSAR-LTR 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              KL GIT + L D   F  I  +F  F   +++ +++   + D  F++ +    + + 
Sbjct: 59  HTTKLTGITKKDLMDVEKFPQIIEKFIQFIG-EDSIFVSWGKE-DYRFLSHDCTLHDVEC 116

Query: 118 --LDPSRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             ++    ID    +  A  +       L    ++  +T   +  H AL D+   +++ +
Sbjct: 117 PSIEKESRIDLQKFVFQAYEELFEHPPSLQFAVEQLALTWEGKQ-HRALADAENTANILL 175

Query: 173 K 173
           K
Sbjct: 176 K 176


>gi|295089927|emb|CBK76034.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Clostridium cf. saccharolyticum K10]
          Length = 347

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 69/179 (38%), Gaps = 16/179 (8%)

Query: 9   KIVFDIE----TTGLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEA 59
            IV D+E    + G ++  DR    IIEIGAV+L +  +    F   + P   R    + 
Sbjct: 4   YIVLDLEWNQSSGGREASIDRLPFEIIEIGAVKLDENLRIVSEFSRLVRPQVYRTLHYKI 63

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            ++  +T E L ++   F +   EF+D+    +  +       D+  +   +     +  
Sbjct: 64  SEVTHLTAEQLEREGQKFETAVKEFFDWCGN-DCRFCTW-GSMDLTELQRNMVYHGMELP 121

Query: 119 D--PSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              P    D   I      +++   L++     GI    R  H AL D+     V  KM
Sbjct: 122 FQKPLYYFDLQKIYSLIQGNTKRESLDTAVLEMGIE-EERPFHRALDDAWYTGLVMGKM 179


>gi|260436194|ref|ZP_05790164.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8109]
 gi|260414068|gb|EEX07364.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8109]
          Length = 297

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 71/174 (40%), Gaps = 14/174 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + +    ++ D ET+GLD   D+ +E+G +     S++    Q FL P    +S  A  +
Sbjct: 62  KASPTTLLIIDTETSGLDPLQDQCLELGCILFDVPSRSVLAQQSFLLP---VDSNAAEAI 118

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           + I     +    +      F    +  +   +AHNA FD  +       +   P   + 
Sbjct: 119 NRIPAAVTRRPQPWREALVWFEHLLDAADL-LVAHNAAFDRQWFG-----LGVVPATATP 172

Query: 123 IIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + T+   R    +   SR  +  L   YG+ +   + H AL D   +++V+ +
Sbjct: 173 WLCTMEDIRWPAERQLRSRPSVRDLALAYGVPVW--AAHRALSDCIYIAEVFAR 224


>gi|126725765|ref|ZP_01741607.1| Exonuclease [Rhodobacterales bacterium HTCC2150]
 gi|126704969|gb|EBA04060.1| Exonuclease [Rhodobacterales bacterium HTCC2150]
          Length = 193

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 25/194 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            R I  D+ET   D  +  I +IG +  +++  +  T+  ++ P     +    +LHGI 
Sbjct: 9   FRFIAVDVETANYDVSS--ICQIG-LAFVNFDASIDTYSTYVDP-CTSFADGNTRLHGID 64

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++  P F+ I  E            + H ++FD    +A        PL  S   ++
Sbjct: 65  ARTVRGAPVFAQILPELRSVLEAHQ--LVQH-SRFDEKAFDAACSFAGVPPL-KSAWENS 120

Query: 127 LSIARRKHPSSRNDLNSLC----KRYGITISHRSKHGALLDSHLLSDVYI---------- 172
           ++IAR+  P  + +         K  G+  +H   H A  D+   ++V +          
Sbjct: 121 VTIARKAWPELKGNGGHGLGNLKKVLGLQFNH---HDAGEDARAAAEVVLMAEKRMGAKF 177

Query: 173 KMMVGGSQINFGFK 186
            M  G  Q+ F F 
Sbjct: 178 NMYSGSRQLAFEFN 191


>gi|34540075|ref|NP_904554.1| exonuclease [Porphyromonas gingivalis W83]
 gi|34396386|gb|AAQ65453.1| exonuclease [Porphyromonas gingivalis W83]
          Length = 163

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   +++   +  +G + +      +R +   + P     +    ++HG+T  
Sbjct: 4   FAAIDFETA--NAERTSVCSVGIIVVRGGQIVHRYYS-LIRPEPDYYNYHNTRVHGLTAA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +    F  +++E            +AHN  FD G + A   R+ +          TL 
Sbjct: 61  DTESARIFPDVWAEVEPLIA--GLPLVAHNKPFDEGCLKAVF-RMYRMDYPDYPFFCTLQ 117

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRS 156
            ARR+      + L ++ +  G T++   
Sbjct: 118 AARRQLRHLSDHRLPTVAQCCGYTLAQHH 146


>gi|34498401|ref|NP_902616.1| DNA polymerase III subunit epsilon [Chromobacterium violaceum ATCC
           12472]
 gi|34104255|gb|AAQ60614.1| probable DNA polymerase III [Chromobacterium violaceum ATCC 12472]
          Length = 202

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 69/184 (37%), Gaps = 11/184 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEA 59
           ++ ++    +  D ETT L+     ++ +GAV+L      +     + + P+    S   
Sbjct: 22  LLDEHPGEVVSLDCETTSLNVSEAELLSVGAVKLRGDRILHSEALYLLVKPDSVP-SAGN 80

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +HG+    L +        S    F   +    + +  ++DV  +N  ++      L 
Sbjct: 81  IAVHGLRRRDLAEGLPAREAVSRLLAFIGGR--PLLGYYLEYDVAVLNKYVKPWLGIGLP 138

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +I  +      +     +      L++L +  G+    R  H AL D+   + +Y  +
Sbjct: 139 QRQIELSARYYDYRFRQRPDSHIDLSLDALHRELGVPALPR--HDALNDALSAAMLYQAL 196

Query: 175 MVGG 178
              G
Sbjct: 197 RRRG 200


>gi|124268531|ref|YP_001022535.1| exonuclease [Methylibium petroleiphilum PM1]
 gi|124261306|gb|ABM96300.1| exonuclease [Methylibium petroleiphilum PM1]
          Length = 233

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 72/193 (37%), Gaps = 21/193 (10%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAV------------ELLDYSKTNRTFQVFLCPN 51
            +  R IV D+E+ GLD + D ++ I AV                       F++ L P+
Sbjct: 23  LDDARWIVADVESGGLDPRRDPLLAIAAVGVHFAPVQGERGGRRPRIVLGDRFELLLRPS 82

Query: 52  GRK---NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-N 107
           G          + +HGI     +     +     +  +     +  +  ++ FD   I  
Sbjct: 83  GAPSASPDKANILVHGIGIGAQRAGLDPAEALQAWESYIGR--SPLVGFHSAFDRTLIER 140

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           A    + + P +P   ++ L+    + P  R  L+     +GIT    ++H A  D+   
Sbjct: 141 AGRDALGRAPDNPWLDLEHLAAVLHREPRQR-SLDDWLAHHGITC--LARHQASADALAT 197

Query: 168 SDVYIKMMVGGSQ 180
           + + +K+     Q
Sbjct: 198 AQLLLKLWPALRQ 210


>gi|241895341|ref|ZP_04782637.1| hypothetical protein HMPREF0877_0611 [Weissella paramesenteroides
           ATCC 33313]
 gi|241871315|gb|EER75066.1| hypothetical protein HMPREF0877_0611 [Weissella paramesenteroides
           ATCC 33313]
          Length = 183

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 20/186 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+  N    +VFD+E  G    +++IIEIGA+++       + F V +      ++ ++ 
Sbjct: 1   MLFTNLKNYVVFDLEMNG----SNQIIEIGAIKVTGSQNIEK-FSVIVNNPPVGSAMKSF 55

Query: 61  KL--------HG-ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAEL 110
           K         +G IT + +          + F  F    +   + H     DV  I   L
Sbjct: 56  KYITKSMGGKNGWITLDMISHGICEERALNRFMRFVG--DYAIVGHAIVDGDVQLIKEGL 113

Query: 111 QRINKDPLDP-SRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168
           Q  N    D   ++ DT  I      + ++  L  L + YG+ +    KH AL D+    
Sbjct: 114 QHNNLGKWDTRGKLYDTQQIHGAIAGNPQDISLMDLAEMYGVDL-GEQKHRALPDAKETL 172

Query: 169 DVYIKM 174
            +++ M
Sbjct: 173 AIFLAM 178


>gi|258624141|ref|ZP_05719091.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258583572|gb|EEW08371.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 289

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 20/164 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK---NSPEA 59
           R   +  +V D ETTGL  + D++IE+   ++          +V LC   R      P+A
Sbjct: 100 RWVALEPLVLDTETTGL-GERDQVIELAVTDIRG--------EVLLCTRLRPTVGIDPQA 150

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDP 117
           + +HGIT+  L ++P+++ +        + +    +  N+ FD   +             
Sbjct: 151 MGVHGITEAELSNEPTWTQVAPALARLLSGR--HLVIFNSSFDSRMLRQTASAFGDQLSW 208

Query: 118 LDPSRIIDTLSIARRKHPSSRN----DLNSLCKRYGITISHRSK 157
                 +  + +A     S+       L       G++   R+ 
Sbjct: 209 WQEQNCLCAMKLAADAFGSTNRHGTISLADATCEAGVSWKGRAH 252


>gi|314976530|gb|EFT20625.1| exonuclease [Propionibacterium acnes HL045PA1]
          Length = 169

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 53/157 (33%), Gaps = 22/157 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETT LD    RIIEI  ++    +         + P G     EA  +H I+ + 
Sbjct: 17  VILDTETTDLD---GRIIEISIIDAATGTVL---MNQLINPQGAPIYAEARTVHHISPDD 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P+F+ +     D   ++    +A NA FD G I AE      D          + +
Sbjct: 71  LATAPTFTQVRPRLEDVVADR--VVMAWNAPFDQGRIEAEYGLAGLDA-PAWPWCCLMRL 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
                      L+               H  L D   
Sbjct: 128 EAAMMGCRWRRLD-------------GPHRGLGDVIA 151


>gi|206975330|ref|ZP_03236243.1| exonuclease family protein [Bacillus cereus H3081.97]
 gi|217960931|ref|YP_002339499.1| exonuclease [Bacillus cereus AH187]
 gi|206746232|gb|EDZ57626.1| exonuclease family protein [Bacillus cereus H3081.97]
 gi|217064747|gb|ACJ78997.1| exonuclease family protein [Bacillus cereus AH187]
          Length = 281

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 71/181 (39%), Gaps = 15/181 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR----IIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSP 57
            KN    IVFDIE              I++IGAV++     K    F   + P G + + 
Sbjct: 1   MKNTTHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEASTMKIIGEFSELVKP-GARLTR 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              KL GIT + L +   F  I   F  F   +++ ++    + D  F++ +      + 
Sbjct: 59  HTTKLTGITKKDLMNVEKFPQIIERFIQFIG-EDSIFVTWGKE-DYRFLSHDCTLHGVEC 116

Query: 118 LDP--SRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 R ID    +  A  +       L S  ++ G+    +  H AL D+   +++ +
Sbjct: 117 PCMEKERRIDLQKFVFQAYEELFEHTPSLQSAVEQLGLIWEGKQ-HRALADAENTANILL 175

Query: 173 K 173
           K
Sbjct: 176 K 176


>gi|163735140|ref|ZP_02142576.1| Exonuclease [Roseobacter litoralis Och 149]
 gi|161391598|gb|EDQ15931.1| Exonuclease [Roseobacter litoralis Och 149]
          Length = 287

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 65/172 (37%), Gaps = 14/172 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ +  D+ET   ++    I  +G V + +  +  + +   + P         + +HGI 
Sbjct: 1   MKFVAIDVETA--NANMASICSVG-VAVFENGELAQEWYSLIDPRDY-FDGMNVSIHGID 56

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +   P+F+ I  +     ++     + H   FD      +  R    P      +D+
Sbjct: 57  ETQVVGAPTFAEITEQLGAMLSDN--VVVTH-THFD-RVAMHQAARHWSVPPVTCTWLDS 112

Query: 127 LSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +ARR           L ++CK  G T  H   H AL D+     V +  M
Sbjct: 113 ARVARRTWEECAQRGYGLANVCKLIGHTFEH---HNALEDAKASGVVLLAAM 161


>gi|291087532|ref|ZP_06346731.2| exonuclease family protein [Clostridium sp. M62/1]
 gi|291074686|gb|EFE12050.1| exonuclease family protein [Clostridium sp. M62/1]
          Length = 350

 Score = 84.1 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 69/179 (38%), Gaps = 16/179 (8%)

Query: 9   KIVFDIE----TTGLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEA 59
            IV D+E    + G ++  DR    IIEIGAV+L +  +    F   + P   R    + 
Sbjct: 7   YIVLDLEWNQSSGGREASIDRLPFEIIEIGAVKLDENLRIVSEFSRLVRPQVYRTLHYKI 66

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            ++  +T E L ++   F +   EF+D+    +  +       D+  +   +     +  
Sbjct: 67  SEVTHLTAEQLEREGQKFETAVKEFFDWCGN-DCRFCTW-GSMDLTELQRNMVYHGMELP 124

Query: 119 D--PSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              P    D   I      +++   L++     GI    R  H AL D+     V  KM
Sbjct: 125 FQKPLYYFDLQKIYSLIQGNTKRESLDTAVLEMGIE-EERPFHRALDDAWYTGLVMGKM 182


>gi|289665345|ref|ZP_06486926.1| putative PAS/PAC sensor protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 196

 Score = 84.1 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 29/186 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ETTG+D     I+ +G V +  DYS+     ++++            +     + 
Sbjct: 10  VVVDTETTGVDPFVHDILSVGLVSMAKDYSE-----ELYVQLPSNPIWSTFAE-----NN 59

Query: 69  FLK-------DKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINKDP 117
           FLK       +      +      F           ++ HN  FD  F+    +    + 
Sbjct: 60  FLKFSSQWKKNAMPALDVVRSIERFVEACGNGREVIFVGHNFSFDRMFLQKLTKVAGVEK 119

Query: 118 LD--PSRIIDTLSIARRK-----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +     R IDT ++ R        P      +   K + I I   ++H AL D+     +
Sbjct: 120 IRGVSHRSIDTFTLLRSLSICGLVPEEAQTSDGAFKYFDIKIQGDARHTALADALATKIL 179

Query: 171 YIKMMV 176
           + K++ 
Sbjct: 180 FKKLLE 185


>gi|218670823|ref|ZP_03520494.1| DNA polymerase III subunit epsilon [Rhizobium etli GR56]
          Length = 164

 Score = 84.1 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 45/106 (42%), Gaps = 12/106 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           ++ D ETTGL+ +ND IIEIGAV     D         ++  L    R   PE  +L GI
Sbjct: 65  VILDTETTGLNHRNDEIIEIGAVAFTFDDDRAIGDIVGIYGGLQQPSRPIPPEITRLTGI 124

Query: 66  TDEFLKDKPSFSSIFSE--FWDFFNEQNAEWIAHNAKFDVGFINAE 109
           TD  ++       +             +   IAHNA FD  F  A 
Sbjct: 125 TDAMVEG-----QVIDMRSLSALIEPADL-IIAHNAGFDRPFCEAF 164


>gi|319745762|gb|EFV98059.1| DNA polymerase III subunit epsilon [Streptococcus agalactiae ATCC
           13813]
          Length = 195

 Score = 84.1 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 23/181 (12%)

Query: 3   RKNKMRKIVFDIE--TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K     I FD+E  T G   ++  II++ AV+  ++ +    F  ++            
Sbjct: 1   MKQLQEYIAFDLEFNTVG---EHSHIIQVSAVKYSNHQEIA-LFDTYVH-TKVPLQSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT   +   P   ++ ++F  F    +   I +N    D+  +       N   L 
Sbjct: 56  GLTGITARDIIGAPKIETVLTDFQSFVG--DTPLIGYNGHKSDLPLLVE-----NGLDLT 108

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +D    A  +  +  N      L ++    GI       H +L D+ + + VY K 
Sbjct: 109 SQYQVDLYDEAFVRRSTDLNGIVNLKLTTVADFLGIK---GKAHNSLEDARMTARVYEKF 165

Query: 175 M 175
           +
Sbjct: 166 L 166


>gi|229168274|ref|ZP_04295999.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH621]
 gi|228615100|gb|EEK72200.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH621]
          Length = 273

 Score = 84.1 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 75/192 (39%), Gaps = 11/192 (5%)

Query: 25  RIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++ +   K    F   + P+    +    KL GIT + L    +F  I  +F
Sbjct: 18  EIVDIGAVKIDVSTMKVIGEFSELVKPS-APLTRHTTKLTGITKKDLTGVGNFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--IIDT---LSIARRKHPSSR 138
             F   +++ +++   + D  F++ +      +     +    D    +  A  +     
Sbjct: 77  IQFIG-EDSIFVSWGKE-DYRFLSQDCTLYGVECPCMEKESRFDVQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
             L     + G+T   +  H AL D+   +++++K + G   IN  +K + +    +  K
Sbjct: 135 PSLQFAVDQLGLTWEGKQ-HRALADAENTANIFLK-VYGERDINKRYKRHGELELVKNGK 192

Query: 199 TVPNISLLKRDK 210
                    R  
Sbjct: 193 LTEKAKKRMRKW 204


>gi|307720332|ref|YP_003891472.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978425|gb|ADN08460.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
          Length = 247

 Score = 84.1 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 33/192 (17%)

Query: 9   KIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            ++ D ETTG + + DR+I++G  V      + +  F    C         A+++HGIT 
Sbjct: 5   YVILDTETTGTN-EEDRVIQLGYMVLGAKEIEVHNEF----CSTDVAIKFGAMEVHGITP 59

Query: 68  EFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + L+ KP       +    +    +N   I HNA FD+  +  E            ++ID
Sbjct: 60  DLLEGKPPCVETVAYKRLLELNTSEN-YLIIHNAPFDITMLEKE------GFKTQMKVID 112

Query: 126 TLSIARRKHPSSR-NDLNSL-------------CKRYGITISHRSKHGALLDSHLLSDVY 171
           TL +A+   P    + L                 K  GI +     H A+ D  +L  ++
Sbjct: 113 TLRVAKHVMPDEEAHRLQYFRYKMELYKDEEKEAKALGIVV---KAHDAIGDVLVL-KLF 168

Query: 172 IKMMVGGSQINF 183
           +  +    Q  F
Sbjct: 169 LSKLKDIVQAQF 180


>gi|254784370|ref|YP_003071798.1| exonuclease [Teredinibacter turnerae T7901]
 gi|237683955|gb|ACR11219.1| putative exonuclease [Teredinibacter turnerae T7901]
          Length = 235

 Score = 84.1 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 75/177 (42%), Gaps = 11/177 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEA 59
           ++R+N  R +V D E +GLD+   +++ IG V + +   T+ +   + +  +  + + ++
Sbjct: 37  LMREN--RFLVVDCEMSGLDANRSQLLSIGWVVIENARITHASGKHLLI--HADRGAGDS 92

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            ++HG+ D  +    S ++  +          +  + H+A  D+ F+        + PL 
Sbjct: 93  TRIHGLHDATIAGAKSAAAAITLLAKQV--PGSVLVFHHAPLDLRFLQQTAYENFRCPLL 150

Query: 120 PSRIIDTLSIARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              +   L   RR           L    +RYG+       H A+ D+   +++ + 
Sbjct: 151 FGYVDTMLIEQRRLQLQGAESGLRLAQCRERYGLP-PISGHHNAMTDARATAELLLA 206


>gi|229593001|ref|YP_002875120.1| putative DNA poymerase [Pseudomonas fluorescens SBW25]
 gi|229364867|emb|CAY52927.1| putative DNA poymerase [Pseudomonas fluorescens SBW25]
          Length = 235

 Score = 84.1 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 12/176 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
               R +V D+ET+GL+   D+++ IGAV + D +   ++ F+  L     K SP  L +
Sbjct: 36  LRSQRWVVLDLETSGLNLNRDQVLSIGAVVIEDGAVDFSQLFERTLQRAETKLSPSVL-I 94

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPS 121
           HG+    +           +F  F    ++  +A +A FD   +   L+  +      P 
Sbjct: 95  HGLGPSAIAAGSDPVEALLDFMAFVG--DSPLLAFHAPFDQHMLCRALKDSLGYRLAHPF 152

Query: 122 RIIDTLSIARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +D   IA    P +      L+     + + +  R  H A  D+   +++ + +
Sbjct: 153 --LDVADIAPLLCPQAHIREAGLDDWINHFNLHVGER--HHASADALATAELMLIL 204


>gi|30021640|ref|NP_833271.1| exonuclease [Bacillus cereus ATCC 14579]
 gi|29897195|gb|AAP10472.1| DNA polymerase III, epsilon chain [Bacillus cereus ATCC 14579]
          Length = 281

 Score = 84.1 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 72/181 (39%), Gaps = 15/181 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR----IIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP 57
            KN    IVFDIE              I++IGAV++ +   K    F   + P+ R  + 
Sbjct: 1   MKNATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEIGTMKIIEEFSELVKPSAR-LTR 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              KL GIT + L     F  I  +F  F   + + +++   + D  F++ +      + 
Sbjct: 59  HTTKLTGITKKDLMGVEKFPQIIEKFIQFIG-EGSIFVSWGKE-DYRFLSHDCTLYGVEC 116

Query: 118 --LDPSRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             ++    ID    +  A  +       L    ++  +T   +  H AL D+   +++ +
Sbjct: 117 PSIEKENRIDLQKFVFQAYEELFEHTPSLQFAVEQLALTWEGKQ-HRALADAENTANILL 175

Query: 173 K 173
           +
Sbjct: 176 R 176


>gi|229134359|ref|ZP_04263172.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           BDRD-ST196]
 gi|228648980|gb|EEL05002.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           BDRD-ST196]
          Length = 273

 Score = 84.1 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 75/192 (39%), Gaps = 11/192 (5%)

Query: 25  RIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++ +   K    F   + P+    +    KL GIT + L    +F  I  +F
Sbjct: 18  EIVDIGAVKIDVSTMKVIGEFSELVKPS-APLTRHTTKLTGITKKDLIGVGNFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--IIDT---LSIARRKHPSSR 138
             F   +++ +++   + D  F++ +      +     +    D    +  A  +     
Sbjct: 77  IQFIG-EDSIFVSWGKE-DYRFLSQDCTLYGVECPCMEKESRFDVQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
             L     + G+T   +  H AL D+   +++++K + G   IN  +K + +    +  K
Sbjct: 135 PSLQFAVDQLGLTWEGKQ-HRALADAENTANIFLK-VYGERDINKRYKRHGELELVKNGK 192

Query: 199 TVPNISLLKRDK 210
                    R  
Sbjct: 193 LTEKAKKRMRKW 204


>gi|226939937|ref|YP_002795010.1| DNA polymerase III subunit epsilon [Laribacter hongkongensis HLHK9]
 gi|226714863|gb|ACO74001.1| Probable DNA polymerase III [Laribacter hongkongensis HLHK9]
          Length = 202

 Score = 83.7 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 68/176 (38%), Gaps = 11/176 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETT L+ +   ++ IGAV +       + +  + + P     +P ++ +HG+   
Sbjct: 30  VSLDCETTSLNVREAELLSIGAVRIRRGRILASESLYLLVRPEHLP-APGSVVVHGLRPS 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTL 127
            L D  + +   S   DF   +    + +  ++DV  +N  ++ +    L   +I +  L
Sbjct: 89  DLSDGLAPADAVSRLLDFIGGR--ALVGYYLEYDVAVLNKYVKPLTGITLPQRQIEVSGL 146

Query: 128 SIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               R   +        L  + K   +    R  H AL D+     + + M   G 
Sbjct: 147 YYDWRLKQTPDGYVDLRLEEILKTLDLPRMGR--HDALTDAVTAGMILLAMRARGH 200


>gi|260769996|ref|ZP_05878929.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260615334|gb|EEX40520.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|315182520|gb|ADT89433.1| DNA polymerase III, epsilon subunit [Vibrio furnissii NCTC 11218]
          Length = 238

 Score = 83.7 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 68/172 (39%), Gaps = 10/172 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD ET+G+D+ +D+I+ +G V +          +     +    + ++  ++ IT + 
Sbjct: 54  LAFDFETSGVDAGHDQILSLGWVGMTLDQIDVAASEEIFVRHPEFVTADSAVINHITPQV 113

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L    +        +     + A    H A  +  F+   ++        P   +DTL I
Sbjct: 114 LAHGVTLDEAMDRLFGQLAGKIALV--HGACIERAFVAQYMRERFAIEHFPCVWVDTLQI 171

Query: 130 ARRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            ++   + +        LN +  RY   +   + H A +D+   ++++   M
Sbjct: 172 EKQMTYAGKTECGTSFQLNDVRTRY--ALPQYNAHSAAIDALATAELFTAQM 221


>gi|282880255|ref|ZP_06288971.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
 gi|281305850|gb|EFA97894.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
          Length = 905

 Score = 83.7 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 22/174 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            +VFD ETTGL+   D I++I AV +          F VF+    R+      KL  I +
Sbjct: 522 IVVFDTETTGLNVFEDDIVQIAAVRMRQGCVVPGSEFVVFMR-TNREIPR---KLGNIDN 577

Query: 68  EFLKD-------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---P 117
             +++        PS       F ++    N+  + HNA +D   +N  LQR   D    
Sbjct: 578 PLIEEIQHHQLYSPS--EGLKMFLEYVG--NSRLLGHNADYDYHILNFNLQRYLPDIQLE 633

Query: 118 LDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              +   D+L + R   P+ +   L  L     + +  ++ H A  D H    V
Sbjct: 634 ERCNMYFDSLKLIRLLEPNLKEYKLKYLLSV--LHLEGQNSHLADADVHATCSV 685


>gi|229174198|ref|ZP_04301733.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus MM3]
 gi|228609319|gb|EEK66606.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus MM3]
          Length = 281

 Score = 83.7 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 15/181 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR----IIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSP 57
            +N    IVFDIE              I++IGAV++     K    F   + P+ R  + 
Sbjct: 1   MENATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEASTMKVIGEFSELVKPSAR-LTR 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              KL GIT E L     F  I  +F  F   +++ +++   + D  F++ +      + 
Sbjct: 59  HTTKLTGITKEDLIGVEKFPQIIEKFIQFIG-EDSVFVSW-GREDYRFLSHDCTLHGVEC 116

Query: 118 LDPSR--IIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               +    D    +  A  +       L    ++ G+T   +  H AL D+   +++ +
Sbjct: 117 PCMEKESKFDLQKFVFQAYEELFEHTPSLQFAVEQLGLTWEGKQ-HRALADAENTANILL 175

Query: 173 K 173
           K
Sbjct: 176 K 176


>gi|170782736|ref|YP_001711070.1| putative exonuclease [Clavibacter michiganensis subsp. sepedonicus]
 gi|169157306|emb|CAQ02493.1| putative exonuclease [Clavibacter michiganensis subsp. sepedonicus]
          Length = 216

 Score = 83.7 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 63/181 (34%), Gaps = 29/181 (16%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLHGIT 66
               D ET   ++ +     +G V++ D      T    + P    +S      ++HGI 
Sbjct: 12  FTAIDFETA--NNSSASACSVGLVKVRDG-VVVDTASWLIRPPAGHDSFSVWNTRIHGIV 68

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ + D   ++        F  +     +AHNA+FD+G I    +        P   + +
Sbjct: 69  EDDVADADGWADQLPRLMAFAGDD--HLVAHNARFDMGVIQGACKATAL-IAPPYSYLCS 125

Query: 127 LSIARRKHPSSRNDLNSLCKRYGI-TISHRS-----------------KHGA--LLD-SH 165
           L +ARR +      L    +  G    SH                   +HGA  L D + 
Sbjct: 126 LQVARRTYTLDSYRLPVAARAAGFEDFSHHEALADARACAAIVVHAADRHGAASLADLAE 185

Query: 166 L 166
            
Sbjct: 186 A 186


>gi|312881132|ref|ZP_07740932.1| Exonuclease RNase T and DNA polymerase III [Aminomonas paucivorans
           DSM 12260]
 gi|310784423|gb|EFQ24821.1| Exonuclease RNase T and DNA polymerase III [Aminomonas paucivorans
           DSM 12260]
          Length = 282

 Score = 83.7 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 24/181 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLD-------YSKTNRTFQVFLCPNGRKNSPEA 59
           M     D ET     ++   + +  V             + +R F+ F            
Sbjct: 1   MNFAALDFETANRYPESPCSLGVVVVREGRVVAERLWGIRPHRAFRTF--------ERGN 52

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGIT    ++ P F  ++ E       +     AHNA FD+  +   L      P  
Sbjct: 53  TWIHGITAAAAREWPEFPPVWEEVRPLL--EGLPLAAHNAPFDLEVLRRTLALYALTP-P 109

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           P+R + T+ ++RR  P      L+ + +  G +  H   H AL D+   +  ++ +    
Sbjct: 110 PARGLCTVRLSRRAWPGLESYKLHRVARALGFSFKH---HRALEDARACA--FLALRAAQ 164

Query: 179 S 179
           +
Sbjct: 165 A 165


>gi|78212673|ref|YP_381452.1| DNA polymerase III, epsilon subunit [Synechococcus sp. CC9605]
 gi|78197132|gb|ABB34897.1| Exonuclease [Synechococcus sp. CC9605]
          Length = 280

 Score = 83.7 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 71/174 (40%), Gaps = 14/174 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + +    ++ D ET+GLD + D+ +E+G +     S++    Q FL P    +S  A  +
Sbjct: 45  KASPTTLLIIDTETSGLDPQQDQCLELGCILFDVPSRSVLAQQSFLLP---VDSNAAEPI 101

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           + I     +    +      F    +  +   +AHNA FD  +       +   P   + 
Sbjct: 102 NRIPAAVTRRPQPWREALVWFEHLLDAADL-LVAHNAAFDRQWFG-----LGVVPATATP 155

Query: 123 IIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            + T+   R    +    R  +  L   YG+ +   + H AL D   ++DV+ +
Sbjct: 156 WLCTMDDIRWPAERQLRLRPSVRDLALAYGVPVW--AAHRALSDCIYIADVFAR 207


>gi|302823961|ref|XP_002993628.1| hypothetical protein SELMODRAFT_48207 [Selaginella moellendorffii]
 gi|300138556|gb|EFJ05320.1| hypothetical protein SELMODRAFT_48207 [Selaginella moellendorffii]
          Length = 175

 Score = 83.3 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 12/170 (7%)

Query: 9   KIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNG-RKNSPEALKLHG 64
            + +D+ETT   +  +   I+E GAV +         +F   + P+     SP ++  +G
Sbjct: 2   IVFYDVETTVPEVKGQGYEILEFGAVVVSARGLEELDSFTTLVRPSSLALVSPRSVSCNG 61

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI 123
           I  + L   PSF  I        + +   W  HN  +FD   I      I +   + +  
Sbjct: 62  IVQDSLVGAPSFLEIADRVHALLHGR--VWAGHNILRFDNLRIKEAFASIGRAGPEAAGH 119

Query: 124 IDTLSIARRKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           IDT  + R+       +L   +L   +G+    + +H +L D  +  +V 
Sbjct: 120 IDTFPLLRKSFGQRAGNLKMATLASYFGL---GKQEHRSLADVRMNIEVL 166


>gi|295103993|emb|CBL01537.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Faecalibacterium prausnitzii SL3/3]
          Length = 330

 Score = 83.3 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 63/157 (40%), Gaps = 8/157 (5%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFS 81
              I+EIGAV++ + +    TF + L P   RK      K+ G+T   L           
Sbjct: 31  RGEIVEIGAVKIDEDANVLDTFSIHLRPRIFRKLQHHIAKVTGLTQADLDKGEPIVQGLR 90

Query: 82  EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-- 139
            F  +    +AE+       DV  +   L   N D   P+   D   +  R+HP      
Sbjct: 91  RFMQWCGP-DAEFAEWGLD-DVPVLKQNLFLCNLDESRPTVWYDLQQVFLREHPRKEGEG 148

Query: 140 -DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             L S+  R GI +  R  H AL D+   +DV  +++
Sbjct: 149 MTLESVVTRMGIPME-RPFHDALSDTLYTADV-CRLL 183


>gi|229012729|ref|ZP_04169899.1| Exonuclease RNase T and DNA polymerase III [Bacillus mycoides DSM
           2048]
 gi|228748564|gb|EEL98419.1| Exonuclease RNase T and DNA polymerase III [Bacillus mycoides DSM
           2048]
          Length = 273

 Score = 83.3 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 75/192 (39%), Gaps = 11/192 (5%)

Query: 25  RIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++ +   K    F   + P+    +    KL GIT + L    +F  I  +F
Sbjct: 18  EIVDIGAVKIDVSTMKVIGEFSELVKPS-APLTRHTTKLTGITKKDLIGVGNFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--IIDT---LSIARRKHPSSR 138
             F   +++ +++   + D  F++ +      +     +    D    +  A  +     
Sbjct: 77  IQFIG-EDSIFVSWGKE-DYHFLSQDCTLYGVECPCMEKESRFDVQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
             L     + G+T   +  H AL D+   +++++K + G   IN  +K + +    +  K
Sbjct: 135 PSLQFAVDQLGLTWEGKQ-HRALADAENTANIFLK-VYGERDINKRYKRHGELELVKNGK 192

Query: 199 TVPNISLLKRDK 210
                    R  
Sbjct: 193 LTEKAKKRMRKW 204


>gi|213967758|ref|ZP_03395905.1| exonuclease [Pseudomonas syringae pv. tomato T1]
 gi|301382395|ref|ZP_07230813.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13]
 gi|302061212|ref|ZP_07252753.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40]
 gi|302132416|ref|ZP_07258406.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213927534|gb|EEB61082.1| exonuclease [Pseudomonas syringae pv. tomato T1]
          Length = 237

 Score = 83.3 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 10/171 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP A+ +
Sbjct: 38  LRQQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKLSP-AVLI 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+    +           +F +F    ++  +  +A FD   +   L+  + D      
Sbjct: 97  HGLAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLARALKE-SLDYRLQHA 153

Query: 123 IIDTLSIARRKHPSS--RN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             D   IA      +  R+  L+   + +G+    R  H A  D+ + +++
Sbjct: 154 FFDAAEIAPMLCEQANLRHAGLDDWTQFFGLHAEER--HNASADALVTAEL 202


>gi|256370678|ref|YP_003108503.1| putative bifunctional DNA polymerase III subunit alpha/DNA
           polymerase III subunit epsilon [Candidatus Sulcia
           muelleri SMDSEM]
 gi|256009470|gb|ACU52830.1| putative bifunctional DNA polymerase III, alpha subunit (DnaE)/DNA
           polymerase III, epsilon subunit (DnaQ) [Candidatus
           Sulcia muelleri SMDSEM]
          Length = 1406

 Score = 83.3 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 17/185 (9%)

Query: 9   KIVFDIETTGLDSKND-------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            I+FD ETTGL    +       R++ +      +  K        + P G +    + K
Sbjct: 2   YIIFDTETTGLPKNYNAPIINWPRLVRLSWCLYDENLKLIELKDYIIKPEGFEIPFNSTK 61

Query: 62  LHGI-TDEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINK-DPL 118
           +HGI T+E L+     + +  +F      +N++  I HN  FD+  + AE  R+ K   L
Sbjct: 62  IHGISTEEALEKGYKRNFVLEKFN--IRIKNSKFLIGHNIYFDLKVLCAEFIRLKKIHYL 119

Query: 119 DPSRIIDTLSIARRK--HPSSRNDLN--SLCKRY-GITISHRSKHGALLDSHLLSDVYIK 173
              +IIDT   +         +  L   +L + Y  +       H +  D    S  + +
Sbjct: 120 YKKKIIDTKEKSINFCAIKIGKGKLKWPTLTELYKKLFNDTFIAHDSKSDVLATSKCFFE 179

Query: 174 MMVGG 178
           ++  G
Sbjct: 180 LLRIG 184


>gi|188994191|ref|YP_001928443.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis
           ATCC 33277]
 gi|188593871|dbj|BAG32846.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis
           ATCC 33277]
          Length = 163

 Score = 83.3 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 7/149 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D ET   +++   +  +G + +      +R +   + P     +    ++HG+T  
Sbjct: 4   FAAIDFETA--NAERTSVCSVGIIVVRGGEIVHR-YYSLIRPEPDYYNYHNTRVHGLTAA 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +    F  +++E            +AHN  FD G + A   R+ +          TL 
Sbjct: 61  DTESARIFPDVWAEVEPLIA--GLPLVAHNKPFDEGCLKAVF-RMYRMDYPDYPFFCTLQ 117

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRS 156
            ARR+      + L ++ +  G  ++   
Sbjct: 118 AARRQLRHLSDHRLPAVAQCCGYILAQHH 146


>gi|320547520|ref|ZP_08041806.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           equinus ATCC 9812]
 gi|320447865|gb|EFW88622.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           equinus ATCC 9812]
          Length = 195

 Score = 83.3 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 77/198 (38%), Gaps = 25/198 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLD--SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M + ++   I FD+E    +  ++   II++ AV+  D  + + +F  ++          
Sbjct: 1   MEKLSE--YIAFDLE---FNTVAEVSHIIQVSAVKFKDGEEID-SFDTYVY-TDVPLQSF 53

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDP 117
              L GIT E +   P    + + F DF  +     + +NA K D+  +       N   
Sbjct: 54  INGLTGITSEKIAKAPKLDKVLANFKDFVGK--TALVGYNALKSDLPLLAE-----NNLD 106

Query: 118 LDPSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L     +D    A  +  S  N      L S+    GI+      H +L D+ + + VY 
Sbjct: 107 LTELYKVDLYDEAYERRSSDLNGIANLKLTSVADFLGIS---GHGHNSLEDARMTALVYE 163

Query: 173 KMMVGGSQINFGFKTNED 190
           K M      ++  +  E+
Sbjct: 164 KFMEFDENKSYLNQQEEE 181


>gi|306825308|ref|ZP_07458650.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304432744|gb|EFM35718.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 197

 Score = 83.3 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 63/182 (34%), Gaps = 24/182 (13%)

Query: 4   KNKMR-KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             K+R  I FD+E    +       +I++ AV   +  +    F  ++            
Sbjct: 1   MEKLRDYIAFDLE---FNQYEGVTHLIQVSAVRFQNGQEIG-AFDSYVH-TTAPLKSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT E LKD P    +   F  F    N   + +NA   D+  +         D  D
Sbjct: 56  GLTGITAETLKDAPKVEQVLKVFQAFVG--NLPIVGYNAAKSDLPILLEH----GIDYRD 109

Query: 120 PSRIIDTLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + +D    A        H  +   L ++    G    H   H +L D+ + + VY   
Sbjct: 110 QYK-VDLYDEAFERRSSDLHGIANLKLQTVANFLGF---HGKSHNSLEDARMTARVYEAF 165

Query: 175 MV 176
           + 
Sbjct: 166 LE 167


>gi|306834330|ref|ZP_07467447.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           bovis ATCC 700338]
 gi|304423503|gb|EFM26652.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           bovis ATCC 700338]
          Length = 195

 Score = 83.3 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 75/187 (40%), Gaps = 17/187 (9%)

Query: 9   KIVFDIETTGLD--SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            I FD+E    +  ++   II++ AV+  +  + + +F  ++             L GIT
Sbjct: 7   YIAFDLE---FNTVAEKSHIIQVSAVKFKEGHEVD-SFDTYVY-TDVPLQSFINGLTGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIID 125
            E + + P    + ++F  F  E     + +NA K D+  +      ++   L    + D
Sbjct: 62  SEKIANAPKLDEVLADFKTFVGE--TALVGYNALKSDLPLLAEN--ELDLTELYKVDLYD 117

Query: 126 TLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                R    +  +   L S+ +  GI+      H +L D+ + + VY K M      ++
Sbjct: 118 EAFERRSTDLNGIASLKLTSVAEFLGIS---GHGHNSLEDARMTALVYEKFMEFDENKSY 174

Query: 184 GFKTNED 190
             +  E+
Sbjct: 175 LNQQEEE 181


>gi|113955550|ref|YP_730762.1| DNA polymerase III subunit epsilon [Synechococcus sp. CC9311]
 gi|113882901|gb|ABI47859.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp.
           CC9311]
          Length = 263

 Score = 83.3 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 16/168 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           ++ D ET+GLD +    +EIGA+   +   +        L       S  A  ++ I   
Sbjct: 41  LIIDTETSGLDPEAHHCLEIGAILFDVSSRQILAQMSCLLPVE----SNAAEAINRIPAA 96

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +    +      F +     +   +AHNA FD  +           P      + ++ 
Sbjct: 97  VTRLPQPWEPGLHYFQELLKAADL-LVAHNAAFDQQWFGR-----GHLPATDLPWLCSME 150

Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             R    K   SR  +  L   Y I +   + H AL D   L++V+ +
Sbjct: 151 DMRWPKEKQLRSRPSVRDLALAYEIPVW--AAHRALSDCIYLAEVFRR 196


>gi|77407162|ref|ZP_00784150.1| exonuclease, putative [Streptococcus agalactiae H36B]
 gi|77174231|gb|EAO77112.1| exonuclease, putative [Streptococcus agalactiae H36B]
          Length = 124

 Score = 83.3 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K R I FDIETTGL+S+ DRI+E+GAV   +  K   +++  +       S +  +++ I
Sbjct: 50  KNRFIAFDIETTGLNSQQDRIVEVGAVLFENG-KVVDSYESLVN-AKVNISADVTRINNI 107

Query: 66  TDEFLKDKPSFSS 78
           T+  +K+ PS + 
Sbjct: 108 TNRMIKNAPSENQ 120


>gi|22537889|ref|NP_688740.1| DNA polymerase III subunit epsilon [Streptococcus agalactiae
           2603V/R]
 gi|76799620|ref|ZP_00781737.1| exonuclease [Streptococcus agalactiae 18RS21]
 gi|77408819|ref|ZP_00785548.1| exonuclease [Streptococcus agalactiae COH1]
 gi|22534786|gb|AAN00613.1|AE014271_8 exonuclease [Streptococcus agalactiae 2603V/R]
 gi|76585026|gb|EAO61667.1| exonuclease [Streptococcus agalactiae 18RS21]
 gi|77172600|gb|EAO75740.1| exonuclease [Streptococcus agalactiae COH1]
          Length = 195

 Score = 83.3 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 66/181 (36%), Gaps = 23/181 (12%)

Query: 3   RKNKMRKIVFDIE--TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K     I FD+E  T G   ++  II++ AV+  ++ +    F  ++            
Sbjct: 1   MKQLQEYIAFDLEFNTVG---EHSHIIQVSAVKYSNHQEIA-LFDTYVH-TKVPLQSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD 119
            L GIT   +   P    + ++F  F    +   I +N  K D+  +       N   L 
Sbjct: 56  GLTGITARDIIGAPKIEIVLTDFQSFVG--DTPLIGYNGYKSDLPLLVE-----NGLDLT 108

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +D    A  +  +  N      L ++    GI       H +L D+ + + VY K 
Sbjct: 109 SQYQVDLYDEAFVRRSTDLNGIVNLKLTTVADFLGIK---GKAHNSLEDARMTARVYEKF 165

Query: 175 M 175
           +
Sbjct: 166 L 166


>gi|282848807|ref|ZP_06258200.1| exonuclease [Veillonella parvula ATCC 17745]
 gi|282581461|gb|EFB86851.1| exonuclease [Veillonella parvula ATCC 17745]
          Length = 327

 Score = 83.3 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 66/197 (33%), Gaps = 23/197 (11%)

Query: 7   MRKIVFDIE--------------TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
           M  IVFD+E              T         II+IGAV+L +       F +F+ P  
Sbjct: 1   MNYIVFDLEWNQPYSNDISFMKRT--KMPLTGEIIQIGAVKLNEKMDIIDHFTMFIKPQY 58

Query: 53  RK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAEL 110
                    +L GIT   L     F +    F  +  ++            D+  +   L
Sbjct: 59  LPRMHKHVRELTGITTHELNHGVPFKTAMQYFQKWCGDEYMLLSWG---SDDILILRENL 115

Query: 111 QRINKDPLDPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                  L   + +D   +   +R   S +  +    +   I+  H S H AL D+   +
Sbjct: 116 MLHKMKALSYDQWVDAQMIYSYQRYGTSQQYSVAHAMEDLNISTEHLSAHNALHDAVFTA 175

Query: 169 DVYIKMMVGGSQINFGF 185
            +   + +    +++  
Sbjct: 176 HICQTLDIAQGILHYDL 192


>gi|29654660|ref|NP_820352.1| exonuclease [Coxiella burnetii RSA 493]
 gi|161831411|ref|YP_001597205.1| exonuclease [Coxiella burnetii RSA 331]
 gi|165924153|ref|ZP_02219985.1| exonuclease [Coxiella burnetii RSA 334]
 gi|29541928|gb|AAO90866.1| exodeoxyribonuclease I [Coxiella burnetii RSA 493]
 gi|161763278|gb|ABX78920.1| exonuclease [Coxiella burnetii RSA 331]
 gi|165916402|gb|EDR35006.1| exonuclease [Coxiella burnetii RSA 334]
          Length = 458

 Score = 83.3 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 88/270 (32%), Gaps = 40/270 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEA 59
           +  ++   + +D+ETTGL+   D+II+  A+   +        ++ +   P+    SPEA
Sbjct: 1   MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILIRLNPD-VIPSPEA 59

Query: 60  LKLHGIT-DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDP 117
           + +H  + D+ L  K        E     N      + +N   FD  F+     R    P
Sbjct: 60  MIIHRFSIDQMLSGKAEI-EAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPP 118

Query: 118 LDP-----SRIIDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALL 162
                      +D   +    +    N           L +L K     ++    H A++
Sbjct: 119 YTHQYDNFCGRMDLYPLTILYYLFKPNALNWPDPFDLKLENLSKA--NQLAEGQAHNAMV 176

Query: 163 DSH---LLSDVYIKMMVGGS-QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
           D      L+ + +         I +  K  E +   +    + +      +  L   +  
Sbjct: 177 DVEASVALAKLLMNQEAMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQGVFG 236

Query: 219 EELD---------EHDKTIQTLGKNAIWDR 239
            +L          +H+          +W R
Sbjct: 237 AQLAYQAPVICLGQHNHY----KNQCLWLR 262


>gi|306832202|ref|ZP_07465356.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325979121|ref|YP_004288837.1| DNA polymerase III subunit epsilon [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|304425641|gb|EFM28759.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325179049|emb|CBZ49093.1| DNA polymerase III subunit epsilon [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 195

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 75/187 (40%), Gaps = 17/187 (9%)

Query: 9   KIVFDIETTGLD--SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            I FD+E    +  ++   II++ AV+  +  + + +F  ++             L GIT
Sbjct: 7   YIAFDLE---FNTVAEKSHIIQVSAVKFKEGHEVD-SFDTYVY-TDVPLQSFINGLTGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIID 125
            E + + P    + ++F  F  E     + +NA K D+  +      ++   L    + D
Sbjct: 62  SEKIANAPKLDEVLADFKTFVGE--TALVGYNALKSDLPLLAEN--ELDLTELYKVDLYD 117

Query: 126 TLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                R    +  +   L S+ +  GI+      H +L D+ + + VY K M      ++
Sbjct: 118 EAFERRSTDLNGIANLKLTSVAEFLGIS---GHGHNSLEDARMTALVYEKFMEFDENKSY 174

Query: 184 GFKTNED 190
             +  E+
Sbjct: 175 LNQQEEE 181


>gi|297802094|ref|XP_002868931.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297314767|gb|EFH45190.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 227

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 85/215 (39%), Gaps = 16/215 (7%)

Query: 9   KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTN-RTFQVFLCPNG-RKNSPEALKLHG 64
            + FD+ETT  +       I+E GA+ +         +F   + P      S  + +  G
Sbjct: 10  IVFFDLETTVPNKVGQYFHILEFGAIIVCPRKLEELESFTTLIQPKDLSVVSIRSSRSDG 69

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRI 123
           IT   + + PSF  +  + +   N +   W  HN  +FD   I      I K   +PS I
Sbjct: 70  ITRAKVTNAPSFEDVAEKIYGLLNGR--IWAGHNIRRFDCIRIKEAFAEIGKAAPEPSGI 127

Query: 124 IDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ID+L +   K    +    + SL   +G+ +    KH +L D  +  +V        + +
Sbjct: 128 IDSLGLLSDKFGKRAGNMKMASLAAYFGLGV---QKHRSLDDVRMNLEVLKH----CATV 180

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            F   T  ++   + + +   ++  + +  +  R 
Sbjct: 181 LFLESTLPNQLEGKWQSSSKIMTRSRSNYQIAQRA 215


>gi|28867700|ref|NP_790319.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28850935|gb|AAO54014.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 237

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 10/171 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP A+ +
Sbjct: 38  LRQQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKLSP-AVLI 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+    +           +F +F    ++  +  +A FD   +   L+  + D      
Sbjct: 97  HGLAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLARALKE-SLDYRLQHA 153

Query: 123 IIDTLSIARRKHPSS--RN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             D   IA      +  R+  L+   + +G+    R  H A  D+ + +++
Sbjct: 154 FFDAAEIAPMLCEQANLRHAGLDDWTQFFGLHAEER--HNASADALVTAEL 202


>gi|256022684|ref|ZP_05436549.1| ribonuclease T [Escherichia sp. 4_1_40B]
          Length = 130

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 70  LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--INKDPLDPSRII 124
           + +  +   IF                 +AHNA FD  F+ A  +R  + ++P  P    
Sbjct: 5   VSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATF 64

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           DT ++A       +  L+  C+  G+       H AL D+   + ++ +++    ++ 
Sbjct: 65  DTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLG 120


>gi|213418624|ref|ZP_03351690.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 158

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 20/166 (12%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
           +EI  ++   +   N      + P  +    EA+ +HGIT+E +   P+++ I     + 
Sbjct: 1   VEICIIDSHGFIMLN----TLIKPT-KPIPDEAIAIHGITNEMVAFAPAWTDICGAVEEL 55

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS-IARRKHPSSR------- 138
           F      ++ +NA FD+  I        +       ++   S  A + +   R       
Sbjct: 56  FRRFG--FVIYNADFDLRLIRQTYALNERPSEGAPWMLAAHSVCAMKLYAEYRGEPGRFN 113

Query: 139 ----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
               + L       G+ +  +  H AL D  +   +   +  GG++
Sbjct: 114 GYKWHKLVDAAAHEGVVVEGK-AHRALADCKMTLGLVRALAKGGAK 158


>gi|111222131|ref|YP_712925.1| putative DNA-directed DNA polymerase [Frankia alni ACN14a]
 gi|111149663|emb|CAJ61355.1| putative DNA-directed DNA polymerase [Frankia alni ACN14a]
          Length = 238

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 27/215 (12%)

Query: 10  IVFDIETTGL-DSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-----NSPEALKL 62
           +  D+E TG  D   + I+EI  V L     +   ++   + P  R       SP     
Sbjct: 35  VAIDLEGTGAQDGDQEDILEIALVPLHAGAMQIAESYTTVINPGRRIAARPWLSP----- 89

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G+T++ L   P    +  E     N +    + HN   D   ++          + P+ 
Sbjct: 90  -GLTNQVLAGSPPLGRVEPELAARLNGR--ILVGHNVGVDWRLLHRRC-----PTVTPAG 141

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITI------SHRSKHGALLDSHLLSDVYIKMMV 176
           ++DTL +AR     + N L +L  R+ +T       +    H AL D+ + + + +  + 
Sbjct: 142 LLDTLRLARHLGVRTGNPLTTLLDRHDLTRQVTELAAGSQPHRALWDA-IGAGLLLATLT 200

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                +     +E         ++P       D+P
Sbjct: 201 HQFDSSRPATLDELHNLAGIPLSLPVPGWPTGDQP 235


>gi|126342108|ref|XP_001377513.1| PREDICTED: similar to 3-5 exonuclease TREX2 [Monodelphis domestica]
          Length = 241

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 34/197 (17%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYS---------------KTNRTFQVFLCPNGR 53
            +  D+E TGL + +  I EI    +  +S               +      + +CP  +
Sbjct: 10  FVFLDLEATGLPNAHPEIAEISLFAIHRFSLEHPERDESGTLQLPRVLDKLTLCMCPE-Q 68

Query: 54  KNSPEALKLHGITDEFLKD--KPSFS-SIFSEFWDFFNEQNAE--WIAHN-AKFDVGFIN 107
             +P+A ++ G++++ L D  K  F  ++    W+F   Q +    +AHN   +D   + 
Sbjct: 69  NFTPKASEITGLSNQNLADNHKAGFDGAVIRALWEFLKRQKSPICLVAHNGFDYDFPLLR 128

Query: 108 AELQRINKDPLDPSRIIDTLSIARRK-----------HPSSRNDLNSLCKRYGITISHRS 156
            ELQR+  D    +  +DTL   R             H      L +L +RY      ++
Sbjct: 129 TELQRLGADLPGGTVCLDTLPALRGLDKAHHHSTRASHGKKSYSLGNLYRRY-FDDEPQA 187

Query: 157 KHGALLDSHLLSDVYIK 173
            H A  D + L  V++ 
Sbjct: 188 AHSAEGDVYALVMVFLH 204


>gi|332523967|ref|ZP_08400219.1| putative DNA polymerase III, epsilon subunit [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332315231|gb|EGJ28216.1| putative DNA polymerase III, epsilon subunit [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 195

 Score = 83.0 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 23/189 (12%)

Query: 9   KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            I FD+E    ++  D   +I++ AV++ ++ + + +F  F+             L GIT
Sbjct: 7   YIAFDLE---FNTVKDVSHLIQLSAVKMANHEEID-SFDSFVY-TDVPLQSFINGLTGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIID 125
            + +   P  + +  EF  F    +   I +N++  D+  +       N   L     +D
Sbjct: 62  ADKIAKAPKINQVLEEFKAFVG--DCALIGYNSEKSDLPILAD-----NGLDLSEQYTVD 114

Query: 126 TLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
               A  +  S  N      L ++    GI       H +L D+ + + VY   +     
Sbjct: 115 LYDEAFERRSSDLNGITNLKLTTVASFLGIK---GKGHNSLEDARMTARVYEAFLELDDN 171

Query: 181 INFGFKTNE 189
            N+  +  E
Sbjct: 172 KNYLSQQEE 180


>gi|313892759|ref|ZP_07826340.1| exonuclease [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442690|gb|EFR61101.1| exonuclease [Veillonella sp. oral taxon 158 str. F0412]
          Length = 327

 Score = 83.0 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 23/195 (11%)

Query: 7   MRKIVFDIE--------------TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
           M  IVFD+E              T         II+IGAV+L D       F +F+ P  
Sbjct: 1   MNYIVFDLEWNQPYSNDISFMKRT--KMPLTGEIIQIGAVKLNDEMDIVDHFTMFIKPQY 58

Query: 53  RK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAEL 110
                    +L GIT   L     F +    F ++  ++            D+  +   L
Sbjct: 59  LPRMHKHVRELTGITSRELDHGVPFKTAMQHFQNWCGDEYMLLSWG---SDDILILRENL 115

Query: 111 QRINKDPLDPSRIIDT-LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                  L   + +D  +  A +++  + +  +    +   I+  H S H AL D+   +
Sbjct: 116 MLHKMKALSYDQWVDAQMIYAYQRYGTNQQYSVAHAMEDLNISTEHLSAHNALHDAVFTA 175

Query: 169 DVYIKMMVGGSQINF 183
            +  K+ +    +++
Sbjct: 176 RICQKLDIPQGILHY 190


>gi|154705994|ref|YP_001424798.1| exodeoxyribonuclease I [Coxiella burnetii Dugway 5J108-111]
 gi|154355280|gb|ABS76742.1| exodeoxyribonuclease I [Coxiella burnetii Dugway 5J108-111]
          Length = 458

 Score = 83.0 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 88/270 (32%), Gaps = 40/270 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEA 59
           +  ++   + +D+ETTGL+   D+II+  A+   +        ++ +   P+    SPEA
Sbjct: 1   MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILIRLNPD-VIPSPEA 59

Query: 60  LKLHGIT-DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDP 117
           + +H  + D+ L  K        E     N      + +N   FD  F+     R    P
Sbjct: 60  MIIHRFSIDQMLSGKAEI-EAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPP 118

Query: 118 LDP-----SRIIDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALL 162
                      +D   +    +    N           L +L K     ++    H A++
Sbjct: 119 YTHQYDNFCGRMDLYPLTILYYLFKPNALNWPDPFDLKLENLSKA--NQLAEGQAHNAMV 176

Query: 163 DSH---LLSDVYIKMMVGGS-QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
           D      L+ + +         I +  K  E +   +    + +      +  L   +  
Sbjct: 177 DVEASVALAKLLMNQEAMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQGVFG 236

Query: 219 EELD---------EHDKTIQTLGKNAIWDR 239
            +L          +H+          +W R
Sbjct: 237 AQLAYQAPVICLGQHNHY----KNQCLWLR 262


>gi|302537604|ref|ZP_07289946.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
 gi|302446499|gb|EFL18315.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
          Length = 253

 Score = 83.0 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 15/165 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +    + FD+ETTG +    RI+    VE+       R    +L   G     EA 
Sbjct: 11  MEAWHGGALVGFDLETTGTEPGESRIVTAAVVEVRGGEVRARRG--WLADPGIPIPGEAA 68

Query: 61  KLHGITDE-FLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKD 116
            +HGI+ E  + +    + +  E      E     A  +A+NA FD+  ++AEL R    
Sbjct: 69  AIHGISTERAVAEGRPAAEVAEEVAAALVEHWRGGAVVVAYNAAFDLTLLSAELARYRLP 128

Query: 117 PL-------DPSRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITI 152
            L       +   ++D L+I R   +    +  L ++C  YG+T+
Sbjct: 129 SLADRLGGPETGPVVDPLTIDRAVDRFRRGKRTLEAVCGVYGVTL 173


>gi|330874768|gb|EGH08917.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 237

 Score = 83.0 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 81/203 (39%), Gaps = 10/203 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP A+ +
Sbjct: 38  LRQQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP-AVLI 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+    +           +F +F  E  +  +  +A FD   +   L+  + D      
Sbjct: 97  HGLAPSAIAAGSEPVEALLDFMEFVGE--SPILGFHAPFDQHMLARALKE-SLDYRLQHA 153

Query: 123 IIDTLSIARRKHPSS--RN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             D   IA      +  R+  L+   + +G+    R  H A  D+ + +++ + +     
Sbjct: 154 FFDAAEIAPMLCEQANLRHAGLDDWTQFFGLHAEER--HNASADALVTAELALILFSHAR 211

Query: 180 QINFGFKTNEDRFFKEEKKTVPN 202
           +              + ++   +
Sbjct: 212 RQQIDSPVRLAESLGQWRRRKQS 234


>gi|260221319|emb|CBA29763.1| hypothetical protein Csp_A13780 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 307

 Score = 83.0 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 16/162 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDY---SKTNRTFQVF--LCPNGRKNSPEALKLH 63
            +V D ETTGLD   ++IIE+  + +             QV+  L   G+   PE + + 
Sbjct: 39  ILVLDTETTGLDQAKEKIIELALLRVDIDTATGLPVGPVQVYDGLEDPGKAIPPEVVAIT 98

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI D  ++ +    +  +E     +      IAHNA FD  F+ + L      P      
Sbjct: 99  GIQDADVQGQALDEARVAELMQGVD----VVIAHNAGFDRPFVESRLPAFAALPWA-CSF 153

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            D      +    S   L SL +  G+       H A +D H
Sbjct: 154 ADL---DWKSLGRSSAKLESLAQELGLFYD---AHRAEMDCH 189


>gi|319935781|ref|ZP_08010210.1| hypothetical protein HMPREF9488_01041 [Coprobacillus sp. 29_1]
 gi|319809216|gb|EFW05665.1| hypothetical protein HMPREF9488_01041 [Coprobacillus sp. 29_1]
          Length = 301

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 12/170 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI-T 66
           R  VFDIE   L+     +  IG VELLD  +   T+   + P          K+H I T
Sbjct: 4   RITVFDIEV--LNQDPASVCAIGIVELLD-QQVISTYYSLVKPRNLSYDVYRYKVHKIKT 60

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              LK++P F  ++ +   +F  +N   ++H+ + D+  + A L++ N        +  T
Sbjct: 61  KSLLKERP-FQDVWKDIHHYF--ENTIVVSHDIQGDMMNLRAVLKQ-NHISYPHLYMSCT 116

Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             +A   +P   + ++  L +  G        H AL D+   + + I+M+
Sbjct: 117 NVLAHLVYPDLHKYNVKELSQMIGFEF---QAHHALDDAKACAQILIEML 163


>gi|170744636|ref|YP_001773291.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
 gi|168198910|gb|ACA20857.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 296

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 54/163 (33%), Gaps = 17/163 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVF--LCPNGRKNSPEALKLHGI 65
           +V D ETTGLD   D +IE+G V        +  R    F  L   G+       +L GI
Sbjct: 42  LVLDTETTGLDPACDEVIELGIVAFTYGQSGRIYRVRHRFNQLHQPGKPIPEAVTRLTGI 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRII 124
           TD  +  K     I          +    IAHNA+FD              +       I
Sbjct: 102 TDADVAGK----RIDDAAVAALAAKARVVIAHNARFDRRMCEVRWPFFAELNWACSCHQI 157

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           D      R        L  L   +G      + H A+ D   L
Sbjct: 158 D-----WRDEGHEAARLGGLLADHG---RFHNGHRAIDDCEAL 192


>gi|78486054|ref|YP_391979.1| DNA polymerase III subunit epsilon [Thiomicrospira crunogena XCL-2]
 gi|78364340|gb|ABB42305.1| conserved hypothetical protein containing exonuclease domain
           [Thiomicrospira crunogena XCL-2]
          Length = 293

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 17/170 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-----FLCPNGRKNSPEALKL 62
           +  + D ETTGLD++   IIE+G  +++++      +Q+     FL     + S E  ++
Sbjct: 42  KVCIIDTETTGLDTRVCEIIELG-YQIVEFDSQGNFYQILTAKNFLNEPEGEISAEVTQV 100

Query: 63  HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            G+T + +K  +  ++ + ++  D         +AHNA FD   +         D +   
Sbjct: 101 TGLTLDDVKGHQIPWAEVEADMADVQLC-----VAHNAAFDRPVV-ERYSDCFIDKVWGC 154

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +                   LC + G        H AL D   L+ + 
Sbjct: 155 SAV--QVDWFHLAKVGSRSQEFLCWKVGQFFYG--AHRALDDVQALTHLL 200


>gi|159906145|ref|YP_001549807.1| exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C6]
 gi|159887638|gb|ABX02575.1| Exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C6]
          Length = 191

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 72/187 (38%), Gaps = 29/187 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT-- 66
            +  D ETTGL      I ++  +      K  + F  +   +  + S  A K+HG+T  
Sbjct: 2   YVFLDTETTGLHPGQ--IAQLSYLVTDKNLKLKKVFNQY--YSVDRMSRSAAKVHGLTMD 57

Query: 67  -DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             + L +  +F     E  D  + +++  I HN  FD+ F+ AE +R+  + +   +   
Sbjct: 58  ILDELSNGMTFEDTVDEVRD--DLEDSVIIGHNISFDIRFLKAEFERLGPEYIPKDK-FC 114

Query: 126 TLSIAR--RKHPSSRN----DLNSLCKRY------GITISHRS-------KHGALLDSHL 166
           T+       K P  +      L  L +        G+  +  +        H A  D+ +
Sbjct: 115 TMFHFTPICKLPGQKRYKRPKLIELMEFLEQCPHEGLEFTKETYGCSDVGFHDARYDTGI 174

Query: 167 LSDVYIK 173
           L   Y K
Sbjct: 175 LYLCYKK 181


>gi|237785839|ref|YP_002906544.1| DNA polymerase III subunit epsilon [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758751|gb|ACR18001.1| DNA polymerase III, epsilon subunit [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 236

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 15/154 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG +    RI+    V +   S         L   G +    A ++HGI+ E+ +
Sbjct: 21  FDLETTGTNPLQARIVTSALVSIHGGS---ANSTELLADPGIEIPESASQIHGISTEYAR 77

Query: 72  D-KPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +       +  +      +   +    I  NA +D+  +      +    +    + D L
Sbjct: 78  EHGEPHDDVLHKTIRAIYDGWERGQTLIVFNAAYDLTILRH----LEPSFVCSGLVFDPL 133

Query: 128 SIARRKHPS--SRNDLNSLCKRYGITISHRSKHG 159
            + R   P       L +L KRYGI + +   H 
Sbjct: 134 VMGRALEPQRTGPRKLGTLVKRYGIQLDN--AHN 165


>gi|322387766|ref|ZP_08061375.1| DNA polymerase III subunit epsilon [Streptococcus infantis ATCC
           700779]
 gi|321141633|gb|EFX37129.1| DNA polymerase III subunit epsilon [Streptococcus infantis ATCC
           700779]
          Length = 196

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 13/170 (7%)

Query: 9   KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            I FD+E    +   D+  +I++ AV   +  +    F  ++             L GIT
Sbjct: 7   YISFDLE---FNRHQDKTHLIQVSAVHFKEGEEVG-AFDSYVY-TDAPLKSFINGLTGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIID 125
            E LK  P    +  +F  F    N   I +NA   D+  +       +   L       
Sbjct: 62  SETLKGAPKVEEVLQKFQVFVG--NLPLIGYNAAKSDLPILLEHGFDYSHQYLVDVYNEA 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               +   H  +   L ++    G        H +L D+ + + VY   +
Sbjct: 120 LERRSSDLHGIANLKLQTVANFLGFK---GQSHNSLEDARMTARVYEAFL 166


>gi|210614957|ref|ZP_03290405.1| hypothetical protein CLONEX_02619 [Clostridium nexile DSM 1787]
 gi|210150481|gb|EEA81490.1| hypothetical protein CLONEX_02619 [Clostridium nexile DSM 1787]
          Length = 190

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 66/178 (37%), Gaps = 24/178 (13%)

Query: 10  IVFDIETTGLDSK----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           IV+D+ETTGL        D I+ +  ++L         F+ +  P   ++  +A  ++GI
Sbjct: 17  IVYDLETTGLYPFSPELGDEILSMCIMDLQGSVL----FEHYFKPEHTESWSKAAAINGI 72

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRII 124
           T E ++++  FS    E    F+  +   I +N   FD  F+ A       +  D  +  
Sbjct: 73  TPEKVENEKPFSFYRDEVQRIFDAAD-ILITYNGIHFDDSFLEA----AGIEIPDVMQFD 127

Query: 125 DTLSIARRKHP-------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             L  A   H           + L +    Y         H A  D       Y +MM
Sbjct: 128 VMLKFAWLMHEWDDYHKSWRWHKLINCAAYYNYEFP---AHDATEDVRATLHCYTEMM 182


>gi|160931331|ref|ZP_02078731.1| hypothetical protein CLOLEP_00168 [Clostridium leptum DSM 753]
 gi|156869715|gb|EDO63087.1| hypothetical protein CLOLEP_00168 [Clostridium leptum DSM 753]
          Length = 172

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 52/157 (33%), Gaps = 22/157 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETT LD    RIIEI  ++    +         + P G     EA  +H I+ + 
Sbjct: 17  VILDTETTDLD---GRIIEISIIDAATGTVL---MDQLINPQGAPICAEARTVHHISPDD 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P+F+ +     D   ++    +A NA FD   I AE      D          + +
Sbjct: 71  LATAPTFTQVRPRLEDVVADR--VVMAWNAPFDRERIEAEYALAGLDA-PAWPWCCLMRL 127

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
                      L+               H  L D   
Sbjct: 128 EASVMGCQWRRLD-------------GPHRGLGDVIA 151


>gi|256377108|ref|YP_003100768.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
 gi|255921411|gb|ACU36922.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
          Length = 372

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 85/242 (35%), Gaps = 34/242 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D E T       R+IEI  V     +         + P G + +P A + HGIT + 
Sbjct: 94  VVLDTELTDF---TGRVIEIAVVATDGATL----LTSLVDPEGAQINPYAQRAHGITAQM 146

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P+   ++ +       +    IA NA FD+  + AE + +  D   P  +      
Sbjct: 147 LTGAPTLEQLWPKLDHVL--RGKRVIAWNAPFDLTRLRAEHRHLFGDADLPDWLTGPWLC 204

Query: 130 ARRKHP---SSRNDLNSLCKRYGITISHR--SKHGALLDSHLLSDVYIKMMVG---GSQI 181
           A RKH      RN         G   +HR    H A  D    +  +IK M     G++ 
Sbjct: 205 AMRKHAAWVGDRNTKG------GGFRNHRLEGGHRAEGDCLA-ALAWIKRMADTAPGTEA 257

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL--------DEHDKTIQTLGK 233
           + G   +            P        +P     T  EL         EH ++++ +  
Sbjct: 258 HAGTGAHAGTGAHAVAGAHPGAVTTGAPEPDL--ATIRELWPQVLGKVREHSRSLEAMLG 315

Query: 234 NA 235
            A
Sbjct: 316 KA 317


>gi|296875763|ref|ZP_06899826.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           parasanguinis ATCC 15912]
 gi|296433228|gb|EFH19012.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           parasanguinis ATCC 15912]
          Length = 197

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 23/176 (13%)

Query: 9   KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            I FD+E    +       II++ AV   D  + +  +  ++    +        L GIT
Sbjct: 7   YIAFDLE---FNQYEGAYQIIQVSAVRFTDGKEVD-HYDSYVY-TDKPLKSFINGLTGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIID 125
            + +++ P    + SEF  F  ++    I +N  K D+  +       N   L+    +D
Sbjct: 62  QDKIQNAPQLEQVLSEFKAFVGDR--PLIGYNAKKSDLPILLE-----NGLDLEDQYAVD 114

Query: 126 TLSIARRKHPSSRND-----LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
               A  + PS  +      L+++ +  G+       H +L D+ + + VY + + 
Sbjct: 115 VFDEAFERRPSDLHGIKNLQLHTVAEFLGVA---GKSHDSLEDARMTALVYEQFLE 167


>gi|148272897|ref|YP_001222458.1| DNA polymerase III subunit epsilon [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830827|emb|CAN01769.1| putative DNA polymerase III , epsilon subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 233

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 10/149 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG+D +  RI+    V L    +          P G +    A  +HG+T E  +
Sbjct: 12  FDLETTGVDVETARIVTACIVVLDAQGEVLERHDWLADP-GVEIPAGAAAIHGVTTERAR 70

Query: 72  DKPSFS-----SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125
                +      I +     F  +    + +NA +D+  +N E  R   +PL D   +ID
Sbjct: 71  AAGRDAAVVVLEIVTTIRAMF-ARGLALVVYNAPYDLTLLNREAVRHGVEPLRDTGPVID 129

Query: 126 TLSIAR--RKHPSSRNDLNSLCKRYGITI 152
            L I +    +   +  L+   + YG+ +
Sbjct: 130 PLVIDKAVDTYRRGKRTLSVAAEHYGVRL 158


>gi|222629868|gb|EEE62000.1| hypothetical protein OsJ_16781 [Oryza sativa Japonica Group]
          Length = 252

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 73/178 (41%), Gaps = 15/178 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDR--IIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPE 58
           +R+ +M  + FD+ETT   +   +  ++E GA+ +         ++   + P     S  
Sbjct: 1   MRRPEM--VFFDVETTAASADEGQRSVLEFGAIVVCPRRLVEVDSYHTVIRPG--DMSAV 56

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP 117
           + +   + D  +   PSF  +    +   + +   W  HN  +FD   I      I +  
Sbjct: 57  SKRFAAMVDVDVASAPSFDQVAERIFGVLDGR--VWAGHNIQRFDCHRIREAFAAIGRAA 114

Query: 118 LDPSRIIDTLSIARRKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +P  I+D+L++          DL   +L   +GI    +  H +L D+ +  +V  +
Sbjct: 115 PEPVAIVDSLNVLAHDFGRRAGDLKMATLASYFGI---GKQSHRSLDDARMNLEVLKR 169


>gi|294793582|ref|ZP_06758719.1| putative exonuclease family protein [Veillonella sp. 3_1_44]
 gi|294455152|gb|EFG23524.1| putative exonuclease family protein [Veillonella sp. 3_1_44]
          Length = 327

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 67/197 (34%), Gaps = 23/197 (11%)

Query: 7   MRKIVFDIE--------------TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
           M  IVFD+E              T         II+IGAV+L +       F +F+ P  
Sbjct: 1   MNYIVFDLEWNQPYSNDISFMKRT--KMPLTGEIIQIGAVKLNEKMDIIDHFTMFIKPQY 58

Query: 53  -RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAEL 110
             +      +L GIT   L     F +    F  +  ++            D+  +   L
Sbjct: 59  LTRMHKHVRELTGITTHELNHGVPFKTAMQYFQKWCGDEYMLLSWG---SDDILILRENL 115

Query: 111 QRINKDPLDPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                  L   + +D   +   +R   S +  +    +   I+  H S H AL D+   +
Sbjct: 116 MLHKMKALSYDQWVDAQMIYSYQRYGTSQQYSVAHAMEDLNISTEHLSAHNALHDAVFTA 175

Query: 169 DVYIKMMVGGSQINFGF 185
            +   + +    +++  
Sbjct: 176 HICQTLDIAQGILHYDL 192


>gi|330965486|gb|EGH65746.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 237

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 81/203 (39%), Gaps = 10/203 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP A+ +
Sbjct: 38  LRQQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP-AVLI 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+    +           +F +F  E  +  +  +A FD   +   L+  + D      
Sbjct: 97  HGLAPSAIAAGSEPVEALLDFMEFVGE--SPILGFHAPFDQHMLGRALKE-SLDYRLQHA 153

Query: 123 IIDTLSIARRKHPSS--RN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             D   IA      +  R+  L+   + +G+    R  H A  D+ + +++ + +     
Sbjct: 154 FFDAAEIAPMLCEQANLRHAGLDDWTQFFGLHAEER--HNASADALVTAELALILFSHAR 211

Query: 180 QINFGFKTNEDRFFKEEKKTVPN 202
           +              + ++   +
Sbjct: 212 RQQIDSPVRLAESLGKWRRRKQS 234


>gi|269797822|ref|YP_003311722.1| exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM
           2008]
 gi|269094451|gb|ACZ24442.1| Exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM
           2008]
          Length = 327

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 66/197 (33%), Gaps = 23/197 (11%)

Query: 7   MRKIVFDIE--------------TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
           M  IVFD+E              T         II+IGAV+L +       F +F+ P  
Sbjct: 1   MNYIVFDLEWNQPYSNDISFMKRT--KMPLTGEIIQIGAVKLNEKMDIIDHFTMFIKPQY 58

Query: 53  RK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAEL 110
                    +L GIT   L     F +    F  +  ++            D+  +   L
Sbjct: 59  LPRMHKHVRELTGITTHELNHGVPFKTAMQYFQKWCGDEYMLLSWG---SDDILILRENL 115

Query: 111 QRINKDPLDPSRIIDT--LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                  L   + +D   +   +R   S +  +    +   I+  H S H AL D+   +
Sbjct: 116 MLHKMKALSYDQWVDAQIIYSYQRYGTSQQYSVAHAMEDLNISTEHLSAHNALHDAVFTA 175

Query: 169 DVYIKMMVGGSQINFGF 185
            +   + +    +++  
Sbjct: 176 HICQTLDIAQGILHYDL 192


>gi|76787294|ref|YP_330370.1| DNA polymerase III subunit epsilon [Streptococcus agalactiae A909]
 gi|77406198|ref|ZP_00783268.1| exonuclease [Streptococcus agalactiae H36B]
 gi|77411632|ref|ZP_00787973.1| exonuclease [Streptococcus agalactiae CJB111]
 gi|76562351|gb|ABA44935.1| exonuclease, putative [Streptococcus agalactiae A909]
 gi|77162349|gb|EAO73319.1| exonuclease [Streptococcus agalactiae CJB111]
 gi|77175192|gb|EAO77991.1| exonuclease [Streptococcus agalactiae H36B]
          Length = 195

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 66/181 (36%), Gaps = 23/181 (12%)

Query: 3   RKNKMRKIVFDIE--TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K     I FD+E  T G   ++  II++ +V+  ++ +    F  ++            
Sbjct: 1   MKQLQEYIAFDLEFNTVG---EHSHIIQVSSVKYSNHQEIA-LFDTYVH-TKVPLQSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT   +   P   ++ ++F  F    +   I +N    D+  +       N   L 
Sbjct: 56  GLTGITARDIIGAPKIETVLTDFQSFVG--DTPLIGYNGHKSDLPLLVE-----NGLDLT 108

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +D    A  +  +  N      L ++    GI       H +L D+ + + VY K 
Sbjct: 109 SQYQVDLYDEAFVRRSTDLNGIVNLKLTTVADFLGIK---GKAHNSLEDARMTARVYEKF 165

Query: 175 M 175
           +
Sbjct: 166 L 166


>gi|237640346|ref|YP_002891201.1| exonuclease family protein [Escherichia coli]
 gi|229561565|gb|ACQ77768.1| exonuclease family protein [Escherichia coli]
          Length = 289

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 14/161 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R   +  +V D ETTGL  + D++IE+   ++             L P   +  P+A+ +
Sbjct: 100 RWVALEPLVLDTETTGL-GERDQVIELAVTDIRGAVLLC----TRLRPT-VEIDPQAMGV 153

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDP 120
           HGIT+  L ++P+++ +        + +    +  N  FD   +                
Sbjct: 154 HGITETELSNEPTWTQVAPALARLLSGR--HLVIFNPSFDSRMLRQTASAFGDQLSWWQE 211

Query: 121 SRIIDTLSIARRKHPSSRN----DLNSLCKRYGITISHRSK 157
              +  + +A     S+       L       G++   R+ 
Sbjct: 212 QNCLCAMKLAADAFGSTNRHGTISLADATCEAGVSWKGRAH 252


>gi|297567712|ref|YP_003686683.1| hypothetical protein Mesil_3363 [Meiothermus silvanus DSM 9946]
 gi|296852161|gb|ADH65175.1| hypothetical protein Mesil_3363 [Meiothermus silvanus DSM 9946]
          Length = 1677

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 17/160 (10%)

Query: 26  IIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGIT-DEFLKDKPSFSSIFSEF 83
           I+EI A ++  +S+     + ++  P   K   EA +  GI   E+ ++K      F E 
Sbjct: 24  ILEIAAQDMQGHSR-----RWYIDTPEPLKPDHEAFRFTGIDFHEYEREKVPRERAFKEL 78

Query: 84  WDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-PLDPSRIIDTLSIARRKHPSSR--- 138
            DF  ++    + HN  ++D+  +   L+ +  + P      +DTL +A+   P      
Sbjct: 79  LDFLGDR--PLLGHNLLRYDLPLLKRALREVGLELPSTAQPALDTLRLAQLVFPLPPEGL 136

Query: 139 --NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
               L  L + +         H A  D      V   +++
Sbjct: 137 SGYRLGDLYRYF-TDEELTGAHRAGADVEATWKVLAGLVL 175


>gi|302782960|ref|XP_002973253.1| hypothetical protein SELMODRAFT_58287 [Selaginella moellendorffii]
 gi|300159006|gb|EFJ25627.1| hypothetical protein SELMODRAFT_58287 [Selaginella moellendorffii]
          Length = 175

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 12/170 (7%)

Query: 9   KIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNG-RKNSPEALKLHG 64
            + +D+ETT   +  +   I+E GAV +         +F   + P+     SP ++  +G
Sbjct: 2   IVFYDVETTVPEVKGQGYDILEFGAVVVSARGLGELDSFTTLVRPSSLALVSPRSVSCNG 61

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI 123
           I  + L   PSF  I        + +   W  HN  +FD   I      I +   + +  
Sbjct: 62  IVQDSLVGAPSFLEIADRVHALLHGR--VWAGHNILRFDNLRIKEAFASIGRAGPEAAGH 119

Query: 124 IDTLSIARRKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           IDT  + R+       +L   +L   +G+    + +H +L D  +  +V 
Sbjct: 120 IDTFPLLRKSFGQRAGNLKMATLASYFGL---GKQEHRSLADVRMNIEVL 166


>gi|331015013|gb|EGH95069.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 222

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 10/171 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP A+ +
Sbjct: 23  LRQQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKLSP-AVLI 81

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+    +           +F +F    ++  +  +A FD   +   L+  + D      
Sbjct: 82  HGLAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLARALKE-SLDYRLQHA 138

Query: 123 IIDTLSIARRKHPSS--RN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             D   IA      +  R+  L+   + +G+    R  H A  D+ + +++
Sbjct: 139 FFDAAEIAPMLCEQANLRHAGLDDWTQFFGLHAEER--HNASADALVTAEL 187


>gi|325103810|ref|YP_004273464.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM
           12145]
 gi|324972658|gb|ADY51642.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM
           12145]
          Length = 214

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 73/204 (35%), Gaps = 14/204 (6%)

Query: 6   KMRKIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           K   +  D ET+GL  + D            ++I  +         +    F+  N    
Sbjct: 2   KDYLLFIDTETSGLPKRWDLPYTNNLNWPYALQISWIIYHPDGTEIKRENYFINENDVTI 61

Query: 56  SPEALKLHGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           S +++K+HGIT++FLK        I  +      + +   I H  + D+  ++ +  R  
Sbjct: 62  SKDSIKIHGITEDFLKSHGKKRKDILRKLAYDIKKFDPLIIGHFVELDIHVLSVDYLRAR 121

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVY 171
            K+P        T+  +     + R     L + +           H A  D+   +D +
Sbjct: 122 IKNPFKGRNFFCTMLKSHDFSKNPRIKFLKLSELFEYLFDKHPADLHNAEKDAEHAADCF 181

Query: 172 IKMMVGGSQINFGFKTNEDRFFKE 195
            +++  G          ++ F K+
Sbjct: 182 FELLKRGQITIQDVTKQKEYFLKQ 205


>gi|229075432|ref|ZP_04208421.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock4-18]
 gi|229097981|ref|ZP_04228931.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock3-29]
 gi|228685418|gb|EEL39346.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock3-29]
 gi|228707681|gb|EEL59865.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock4-18]
          Length = 273

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 81/211 (38%), Gaps = 21/211 (9%)

Query: 25  RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++     K    F   + P G + +    KL GIT + L     F  I  +F
Sbjct: 18  EIVDIGAVKIEASTMKVIGEFSELVKP-GARLTRHTTKLTGITKKDLIGVEKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-------LSIARRKHPS 136
             F   +++ +I+   + D  F++ +      +   P    D+       +  A  +   
Sbjct: 77  IQFIG-EDSVFISWGKE-DYHFLSHDCTLHGLE--CPCMEKDSRFDLQKFVFQAYEELFE 132

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEE 196
               L S  ++ G+T   +  H AL D+   +++ +K+      IN  +K + +    + 
Sbjct: 133 HTPSLQSAVEQLGLTWEGKQ-HRALADAENTANILLKI-YSERDINKRYKRHGELELVKN 190

Query: 197 KKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
            K         R          +EL +H + 
Sbjct: 191 GKLTEKAKKKMRKWVF------KELKKHAER 215


>gi|126342238|ref|XP_001368108.1| PREDICTED: similar to 3-5 exonuclease TREX2 [Monodelphis domestica]
          Length = 241

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 79/197 (40%), Gaps = 34/197 (17%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYS---------------KTNRTFQVFLCPNGR 53
            +  D+E TGL + +  I EI    +  +S               +      + +CP  +
Sbjct: 10  FVFLDLEATGLPNAHPEIAEISLFAIHRFSLEHPERDESGTLQLPRVLDKLTLCMCPE-Q 68

Query: 54  KNSPEALKLHGITDEFLKD--KPSFS-SIFSEFWDFFNEQNAE--WIAHN-AKFDVGFIN 107
             +P+A ++ G++++ L D  K  F+ ++     +F   Q +    +AHN   +D   + 
Sbjct: 69  NFTPKASEITGLSNQNLADNHKAGFNGAVIRALREFLKRQKSPICLVAHNGFDYDFPLLR 128

Query: 108 AELQRINKDPLDPSRIIDTLSIARRK-----------HPSSRNDLNSLCKRYGITISHRS 156
            ELQR+  D    +  +DTL   R             H      L +L +RY      ++
Sbjct: 129 TELQRLGADLPGGTVCLDTLPALRGLDKVHHHSTRASHGKKSYSLGNLYRRY-FDDEPQA 187

Query: 157 KHGALLDSHLLSDVYIK 173
            H A  D + L  V++ 
Sbjct: 188 AHSAEGDVYALVMVFLH 204


>gi|229117000|ref|ZP_04246382.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock1-3]
 gi|228666404|gb|EEL21864.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock1-3]
          Length = 273

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 81/211 (38%), Gaps = 21/211 (9%)

Query: 25  RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++     K    F   + P G + +    KL GIT + L     F  I  +F
Sbjct: 18  EIVDIGAVKIEASTMKVIGEFSELVKP-GARLTRHTTKLTGITKKDLIGVEKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-------LSIARRKHPS 136
             F   +++ +I+   + D  F++ +      +   P    D+       +  A  +   
Sbjct: 77  IQFIG-EDSVFISWGKE-DYHFLSHDCTLHGLE--CPCMEKDSRFDLQKFVFQAYEELFE 132

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEE 196
               L S  ++ G+T   +  H AL D+   +++ +K+      IN  +K + +    + 
Sbjct: 133 HTPSLQSAVEQLGLTWEGKQ-HRALADAENTANILLKI-YSERDINKRYKRHGELELVKN 190

Query: 197 KKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
            K         R          +EL +H + 
Sbjct: 191 GKLTEKAKKKMRKWVF------KELKKHAER 215


>gi|261367316|ref|ZP_05980199.1| exonuclease family protein [Subdoligranulum variabile DSM 15176]
 gi|282570920|gb|EFB76455.1| exonuclease family protein [Subdoligranulum variabile DSM 15176]
          Length = 318

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 70/197 (35%), Gaps = 24/197 (12%)

Query: 7   MRKIVFDIETT-GLDSK-----------NDRIIEIGAVELLDYSKTNRTFQVFLCPNG-R 53
           M  IVFD+E   G   K              II+IGA  + ++     TF+V L P   R
Sbjct: 1   MNLIVFDLEWNIGYQPKTFLYHGTELTLRGEIIQIGAARINEWGDVLDTFEVNLRPRIFR 60

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           K      K+ G++   L           +F D+    +AE        DV  +   L   
Sbjct: 61  KLQHHIAKVTGLSQGDLDAGMPMKEGLQKFLDWAGP-DAELAEWGLD-DVPVLKQNLFLN 118

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             D   P R  D   I  + +P        L S+  R GI       H AL D+   + +
Sbjct: 119 GLDERWPERWYDLQRIFLQTYPRKEGEGMTLESVVDRLGIP-KEEPFHNALDDALYTAKI 177

Query: 171 YIKMMVGGSQINFGFKT 187
             K+      +N G  T
Sbjct: 178 CRKL-----PLNEGLAT 189


>gi|257454146|ref|ZP_05619419.1| DNA polymerase III subunit epsilon [Enhydrobacter aerosaccus SK60]
 gi|257448474|gb|EEV23444.1| DNA polymerase III subunit epsilon [Enhydrobacter aerosaccus SK60]
          Length = 215

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 69/182 (37%), Gaps = 24/182 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQ--VFLCPNGRKNSPEALKLHG 64
            +  D+E TGL++K D I+ +GAV++          T      +C      + + + +HG
Sbjct: 41  WVSLDLEMTGLNAKQDYILSVGAVQVRKESNGFVIDTDSALSLVCRPPVMPTHDTIVIHG 100

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +    + +  S+  + ++       +    I      D+ F+NA  +      L      
Sbjct: 101 LRPIDVDNGLSYDEMLTQLLPMLKNR--PIIGFCVDMDMAFLNAIAKPFLGVELANK--- 155

Query: 125 DTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L    R +  +++            LN L + Y I       H AL D+ + + ++  
Sbjct: 156 --LVDVSRLYQQNQHRHDPSQVGQLPHLNQLLEEYQIP--RLPAHNALNDAIMTAMLFTH 211

Query: 174 MM 175
           +M
Sbjct: 212 LM 213


>gi|160943710|ref|ZP_02090941.1| hypothetical protein FAEPRAM212_01204 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444884|gb|EDP21887.1| hypothetical protein FAEPRAM212_01204 [Faecalibacterium prausnitzii
           M21/2]
          Length = 330

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 8/157 (5%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFS 81
              I+EIGAV++ + +    TF + L P   RK      K+ G+T   L           
Sbjct: 31  RGEIVEIGAVKIDEDANVLDTFSIHLRPRIFRKLQHHIAKVTGLTQADLDRGEPIVQGLR 90

Query: 82  EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-- 139
            F  +    +AE+       DV  +   L   N D   P+   D   +  R+HP      
Sbjct: 91  RFMQWCGP-DAEFAEWGLD-DVPVLKQNLFLCNLDESRPTVWYDLQQVFLREHPRKEGEG 148

Query: 140 -DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             L S+  R G+ +  R  H AL D+   +DV  +++
Sbjct: 149 MTLESVVTRMGVPME-RPFHDALSDTLYTADV-CRLL 183


>gi|301055024|ref|YP_003793235.1| exonuclease [Bacillus anthracis CI]
 gi|300377193|gb|ADK06097.1| exonuclease, RNase T and DNA polymerase III [Bacillus cereus biovar
           anthracis str. CI]
          Length = 281

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 15/181 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR----IIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSP 57
            +N    IVFDIE              I++IGAV++     K    F   + P G + + 
Sbjct: 1   MENATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEASTMKVIGEFSELVKP-GARLTR 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NK 115
              KL GIT + L     F  I  +F  F   +N+ ++    + D  F++ +        
Sbjct: 59  HTTKLTGITKKDLIGVEKFPQIIEKFVQFIG-ENSIFVTWGKE-DYRFLSHDCTLHSVEC 116

Query: 116 DPLDPSRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             +D  R ID    +  A  +       L S  ++ G+T   +  H AL D+   +++ +
Sbjct: 117 PRMDKERRIDLQKFVFQAYEELFEHTPSLQSAVEQLGLTWEGKQ-HRALADAENTANILL 175

Query: 173 K 173
           K
Sbjct: 176 K 176


>gi|322382088|ref|ZP_08056018.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153960|gb|EFX46310.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 142

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 8/97 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + ++ D ETTG++  +  I++I  ++L         F   + P       EA  +HGI
Sbjct: 54  KSKYLILDTETTGIEYDS-EIVDIAIIDLDKNLI----FASLVKP-ICPIPEEATMIHGI 107

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           T+E + D PS+  ++++     +      + +NA FD
Sbjct: 108 TNEMVADAPSWLEVWAQVQKLLS--GKTLLIYNADFD 142


>gi|118602011|ref|YP_908711.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
 gi|118614749|ref|YP_908532.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
 gi|134044854|ref|YP_001102265.1| putative exonuclease [Yersinia pestis biovar Orientalis str. IP275]
 gi|134047136|ref|YP_001102053.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|165937990|ref|ZP_02226550.1| exonuclease, Ycg4D [Yersinia pestis biovar Orientalis str. IP275]
 gi|229516080|ref|ZP_04405530.1| hypothetical protein VCC_000094 [Vibrio cholerae RC9]
 gi|237810081|ref|YP_002894521.1| exonuclease family protein [Escherichia coli]
 gi|237810261|ref|YP_002894700.1| exonuclease family protein [Salmonella enterica]
 gi|300927181|ref|ZP_07142918.1| exonuclease [Escherichia coli MS 182-1]
 gi|309796486|ref|ZP_07690894.1| exonuclease [Escherichia coli MS 145-7]
 gi|118596840|dbj|BAF38144.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
 gi|118597020|dbj|BAF38323.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
 gi|133905055|gb|ABO41070.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|133905388|gb|ABO42150.1| putative exonuclease [Yersinia pestis biovar Orientalis str. IP275]
 gi|165914013|gb|EDR32630.1| exonuclease, Ycg4D [Yersinia pestis biovar Orientalis str. IP275]
 gi|229346860|gb|EEO11828.1| hypothetical protein VCC_000094 [Vibrio cholerae RC9]
 gi|229561745|gb|ACQ77947.1| exonuclease family protein [Salmonella enterica]
 gi|229561937|gb|ACQ78138.1| exonuclease family protein [Escherichia coli]
 gi|300416848|gb|EFK00159.1| exonuclease [Escherichia coli MS 182-1]
 gi|308119991|gb|EFO57253.1| exonuclease [Escherichia coli MS 145-7]
 gi|324008196|gb|EGB77415.1| exonuclease [Escherichia coli MS 57-2]
 gi|327536618|gb|AEA95451.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Dublin]
          Length = 289

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 14/161 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R   +  +V D ETTGL  + D++IE+   ++             L P   +  P+A+ +
Sbjct: 100 RWVALEPLVLDTETTGL-GERDQVIELAVTDIRGAVLLC----TRLRPT-VEIDPQAMGV 153

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDP 120
           HGIT+  L ++P+++ +        + +    +  N+ FD   +                
Sbjct: 154 HGITETELSNEPTWTQVAPALARLLSGR--HLVIFNSSFDSRMLRQTASAFGDQLSWWQE 211

Query: 121 SRIIDTLSIARRKHPSSRN----DLNSLCKRYGITISHRSK 157
              +  + +A     S+       L       G++   R+ 
Sbjct: 212 QNCLCAMKLAADAFGSTNRHGTISLADATCEAGVSWKGRAH 252


>gi|330799210|ref|XP_003287640.1| hypothetical protein DICPUDRAFT_151766 [Dictyostelium purpureum]
 gi|325082367|gb|EGC35851.1| hypothetical protein DICPUDRAFT_151766 [Dictyostelium purpureum]
          Length = 557

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 13/153 (8%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D ETTGL    D I EI  ++L D S     F   + P    +S  A  +HG T++ L  
Sbjct: 286 DTETTGLSVATDEITEISIIDLYDGS----HFYKLINPTTTVSSASAS-IHGHTNKSLAG 340

Query: 73  KPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII---DT 126
              +  I     ++ +   +  A  IAHN KFD G + +++ +           I   D+
Sbjct: 341 NEYWCDIEPSLIEYLSKYQKSGAYIIAHNEKFDRGILASQIGKNAASVPSMFPSIVFVDS 400

Query: 127 LSIARR--KHPSSRNDLNSLCKRYGITISHRSK 157
           + I +R  K       ++SL   Y I  S +S 
Sbjct: 401 IPIFKRFVKKLEGGYSMSSLIDHYQIPKSDKSH 433


>gi|300812809|ref|ZP_07093204.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496145|gb|EFK31272.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 119

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 15/123 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             VFD+E TG      +II+IGA+++ D  +T   F  ++ P+  K +     L GI++ 
Sbjct: 8   YTVFDLEITG-----KKIIQIGALKVRDD-QTVAKFSTYVNPSLEKINDYVSHLTGISNY 61

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
                P    +  +F DF  +     + HN   FD   +       N  P+  +  +DTL
Sbjct: 62  QTDAVPLIDEVMPDFLDFVGDD--TLVGHNILSFDCNVLAD-----NGYPVA-NPKLDTL 113

Query: 128 SIA 130
            +A
Sbjct: 114 LLA 116


>gi|307706777|ref|ZP_07643582.1| exonuclease family protein [Streptococcus mitis SK321]
 gi|307617862|gb|EFN97024.1| exonuclease family protein [Streptococcus mitis SK321]
          Length = 196

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 59/179 (32%), Gaps = 15/179 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R      I FD+E    +       +I++ AV   D  + +  +  ++          
Sbjct: 1   MERLED--YIAFDLE---FNQHEGQTHLIQVSAVRFRDGQEID-AYDSYVH-TSVPLKSF 53

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDP 117
              L GIT E LKD P    +  EF DF        + +NA   D+  +       ++  
Sbjct: 54  INGLTGITAETLKDAPPVEEVIKEFQDFVGS--LPMVGYNAAKSDLPILAEHGLDYSRQY 111

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                       +   H  +   L ++             H +L D+ + + VY   + 
Sbjct: 112 KVDLYDEAFERRSSDLHGIANLKLQTVASFLEF---QGQSHNSLEDARMTAHVYESFLE 167


>gi|319653481|ref|ZP_08007580.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2]
 gi|317394680|gb|EFV75419.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2]
          Length = 202

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ------VFLCP---N 51
           M  K KM  +  D+ETTGL   +D IIE+        + T               P   +
Sbjct: 1   MRNKEKMGLL-LDVETTGLGPNSDEIIELALKLFSYRADTGEILDIKDKAAFLREPISKS 59

Query: 52  GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            + N   A ++HGI  E +  K  F  I  +   +F   ++ + AHNA FD  F+     
Sbjct: 60  AKNNYSRAFRVHGIPYEAVSGK-CFDDI--KIKKYFFHADSVF-AHNASFDRSFLY---- 111

Query: 112 RINKDPLDPSRIIDTLS-IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           R+  + ++  +   T+  +  +++  + + L +L + + I  +    H A+ D   L ++
Sbjct: 112 RMYPEDINELKWYCTMRSVPWKEYGFTDSKLLTLLQSHQI--AESQTHRAMDDITYLLEL 169

Query: 171 YIK 173
             K
Sbjct: 170 LKK 172


>gi|312868467|ref|ZP_07728667.1| DNA polymerase III, epsilon subunit [Streptococcus parasanguinis
           F0405]
 gi|311096212|gb|EFQ54456.1| DNA polymerase III, epsilon subunit [Streptococcus parasanguinis
           F0405]
          Length = 197

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 71/176 (40%), Gaps = 23/176 (13%)

Query: 9   KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            I FD+E    +       II++ AV   D  + +  +  ++    +        L GIT
Sbjct: 7   YIAFDLE---FNQYEGAYQIIQVSAVRFTDGKEVD-HYDSYVY-TDKPLKSFINGLTGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIID 125
            + +++ P    + SEF  F  ++    I +NA+  D+  +       N   L+    +D
Sbjct: 62  QDKIQNAPQLEQVLSEFKTFVGDR--PLIGYNAQKSDLPILLE-----NGLDLEDQYAVD 114

Query: 126 TLSIARRKHPSSRND-----LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
               A  + PS  +      L+++ +  G+       H +L D+ + + VY + + 
Sbjct: 115 VFDEAFERRPSDLHGIKNLQLHTVAEFLGVA---GKSHDSLEDARMTALVYEQFLE 167


>gi|291529682|emb|CBK95268.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Eubacterium rectale M104/1]
          Length = 269

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 6/146 (4%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNSPE 58
           ++ N     +  +ETTGLD  +D +I I A++     K    +  +  ++  N +  +PE
Sbjct: 21  MKLNGRPVFILSVETTGLDKFSDELINIHALKCHFEDKILIEDEEYNRYIR-NTKALTPE 79

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             K+  IT+EFL DK   S++  +F+++   ++A  I  N  F +  +           L
Sbjct: 80  LEKITKITNEFLMDKEDLSTVMEDFYNYIG-EDANIIGFNTSFLLPMLKYAGFETGWM-L 137

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSL 144
           D     D    A          L++L
Sbjct: 138 DIKDCFDLRIAASSTMEEKVYSLDAL 163


>gi|300117664|ref|ZP_07055446.1| exonuclease [Bacillus cereus SJ1]
 gi|298724997|gb|EFI65657.1| exonuclease [Bacillus cereus SJ1]
          Length = 261

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 15/181 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR----IIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSP 57
            +N    IVFDIE              I++IGAV++     K    F   + P G + + 
Sbjct: 1   MENATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEASTMKVIGEFSELVKP-GARLTR 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              KL GIT + L     F  I  +F  F   +++ ++    + D  F++ +    + + 
Sbjct: 59  HTTKLTGITKKDLMGVEKFPQIIEKFIRFIG-EDSIFVTWGKE-DYRFLSHDCTLHSVEC 116

Query: 118 LDP--SRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 R ID    +  A  +       L S  ++ G+    +  H AL D+   +++ +
Sbjct: 117 PCMEKERRIDLQKFVFQAYEELFEHTPSLQSAVEQLGLIWEGKQ-HRALADAENTANILL 175

Query: 173 K 173
           K
Sbjct: 176 K 176


>gi|198283559|ref|YP_002219880.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666066|ref|YP_002426185.1| exodeoxyribonuclease X, putative [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198248080|gb|ACH83673.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518279|gb|ACK78865.1| exodeoxyribonuclease X, putative [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 220

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 80/235 (34%), Gaps = 33/235 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYS--KTNRTFQVFLCPNGRKNSPEALKLHG 64
           MR ++FD ETTG       +IE   + + D    +    F     P  +     A+ +H 
Sbjct: 1   MRALIFDTETTG--RVEPELIEAAWLAVSDLRTLEVEEQFVQRYRP-AKPIEMGAMAVHH 57

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I +E L + P      S F     E     + H+  +D G I               + I
Sbjct: 58  ILEEDLLESPP----ASSFR--LPEDTGYLVGHSIDYDWGVIGK----------PDVKRI 101

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRY-----GITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            T ++ R+  P    +  ++L   +         + ++ H AL D       + ++++  
Sbjct: 102 CTYAMTRKLWPEVDSHSQSALMYHFSKDKRKTRDNLKNAHSALADVK-----FCRILLNK 156

Query: 179 SQINFGFKTNEDRF-FKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232
             ++    + ED + F E  +    +   K        +  +        +  + 
Sbjct: 157 VILSVRPNSWEDLWEFSERARIPETMPFGKHKGVKIADLPDDYRRWALNNLTDMD 211


>gi|134044532|ref|YP_001101863.1| putative exonuclease [Yersinia ruckeri]
 gi|133904895|gb|ABO40912.1| putative exonuclease [Yersinia ruckeri]
          Length = 289

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 60/161 (37%), Gaps = 14/161 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R   +  +V D ETTGL  + D++IE+   ++             L P   +  P+A+ +
Sbjct: 100 RWVALEPLVLDTETTGL-GERDQVIELAVTDIRGAVLLC----TRLRPT-VEIDPQAMGV 153

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDP 120
           HGI +  L ++P+++ +        + +    +  N+ FD   +                
Sbjct: 154 HGINEAELSNEPTWNQVAPALARLLSGR--HLVIFNSSFDSRMLRQTASAFGDQLSWWQE 211

Query: 121 SRIIDTLSIARRKHPSSRN----DLNSLCKRYGITISHRSK 157
              +  + +A     S+       L  +    G++   R+ 
Sbjct: 212 QNCLCAMKLAADAFGSTNRHGTISLADVTCEAGVSWKGRAH 252


>gi|170755896|ref|YP_001781901.1| exonuclease family protein [Clostridium botulinum B1 str. Okra]
 gi|169121108|gb|ACA44944.1| exonuclease family protein [Clostridium botulinum B1 str. Okra]
          Length = 253

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 22/233 (9%)

Query: 7   MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNS 56
           M  I+FD+E    +   +          II+IGAV+L +   T  TF   + P      +
Sbjct: 1   MNYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAVKLNENLTTIDTFNALVKPEIYSNLN 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P    L  +T + L     F  ++ +F  F N+    +       D+  +   +     D
Sbjct: 58  PFIKNLTNLTMDSLNKAKPFREVYKDFLKFLNKDRNIFCIWGMT-DMKELFRNIVYYELD 116

Query: 117 PLD-PSRIIDTLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               P   I+  +   +     ++    L++  + + IT  +   H A  D+   + ++ 
Sbjct: 117 TESIPKEYINVQAYTGKYLNFPKSINVGLSNAVELFHIT-KNNDFHNAFNDAFYTAKIFK 175

Query: 173 KMMVGGSQINFGFKTNEDRFF--KEEKKTVPNISLLKR-DKPLFTRITKEELD 222
           K+     +       N    +  K  K  +  +SL K+ +K   T++T +E D
Sbjct: 176 KIYSEKIKTKIYKPANNSNTYRTKNTKTKIDTVSLFKQFEKMFNTKLTLQEQD 228


>gi|288906155|ref|YP_003431377.1| DNA polymerase III epsilon subunit [Streptococcus gallolyticus
           UCN34]
 gi|288732881|emb|CBI14460.1| putative DNA polymerase III epsilon subunit [Streptococcus
           gallolyticus UCN34]
          Length = 195

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 74/187 (39%), Gaps = 17/187 (9%)

Query: 9   KIVFDIETTGLD--SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            I FD+E    +  ++   II++ AV+  +  + + +F  ++             L GIT
Sbjct: 7   YIAFDLE---FNTVAEKSHIIQVSAVKFKEGHEVD-SFDTYVY-TDVPLQSFINGLTGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIID 125
            E + + P    +  +F  F  E     + +NA K D+  +      ++   L    + D
Sbjct: 62  SEKIANAPKLDEVLVDFKTFVGE--TALVGYNALKSDLPLLAEN--ELDLTELYKVDLYD 117

Query: 126 TLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                R    +  +   L S+ +  GI+      H +L D+ + + VY K M      ++
Sbjct: 118 EAFERRSTDLNGIANLKLTSVAEFLGIS---GHGHNSLEDARMTALVYEKFMEFDENKSY 174

Query: 184 GFKTNED 190
             +  E+
Sbjct: 175 LNQQEEE 181


>gi|167461432|ref|ZP_02326521.1| hypothetical protein Plarl_02538 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 119

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 8/97 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + ++ D ETTG++  +  I++I  ++L         F   + P       EA  +HGI
Sbjct: 31  KSKYLILDTETTGIEYDS-EIVDIAIIDLDKNLI----FASLVKP-ICPIPEEATMIHGI 84

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           T+E + D PS+  ++++     +      + +NA FD
Sbjct: 85  TNEMVADAPSWLEVWAQVQKLLS--GKTLLIYNADFD 119


>gi|171779207|ref|ZP_02920178.1| hypothetical protein STRINF_01055 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282263|gb|EDT47690.1| hypothetical protein STRINF_01055 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 195

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 77/198 (38%), Gaps = 25/198 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLD--SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M + ++   I FD+E    +  ++   II++ AV+  D  + +  F  ++          
Sbjct: 1   MEKLSE--YISFDLE---FNTVAEISHIIQVSAVKFRDGVEVDN-FDTYVY-TDIPLQSF 53

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDP 117
              L GIT E +   P    + ++F DF  +     + +NA K D+  +       N   
Sbjct: 54  INGLTGITSEKIAKAPKLDKVLADFKDFVGK--TALVGYNALKSDLPLLAE-----NDLD 106

Query: 118 LDPSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           L     +D    A  +  S  N      L S+    GI+      H +L D+ + + VY 
Sbjct: 107 LTDFYKVDLYDEAYERRSSDLNGIANLKLTSVADFLGIS---GHGHNSLEDARMTALVYE 163

Query: 173 KMMVGGSQINFGFKTNED 190
           K M      ++  +  E+
Sbjct: 164 KFMEFDENKSYLTQQEEE 181


>gi|294791718|ref|ZP_06756866.1| putative exonuclease family protein [Veillonella sp. 6_1_27]
 gi|294456948|gb|EFG25310.1| putative exonuclease family protein [Veillonella sp. 6_1_27]
          Length = 327

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 67/197 (34%), Gaps = 23/197 (11%)

Query: 7   MRKIVFDIE--------------TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
           M  IVFD+E              T         II+IGAV+L +       F +F+ P  
Sbjct: 1   MNYIVFDLEWNQPYSNDISFMKRT--KMPLTGEIIQIGAVKLNEKMDIIDHFTMFIKPQY 58

Query: 53  -RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAEL 110
             +      +L GIT   L     F +    F  +  ++            D+  +   L
Sbjct: 59  LTRMHKHVRELTGITTHELNHGVPFKTAMQYFQKWCGDEYMLLSWG---SDDILILRENL 115

Query: 111 QRINKDPLDPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                  L   + +D   +   +R   + +  +    +   I+  H S H AL D+   +
Sbjct: 116 MLHKMKALSYDQWVDAQMIYSYQRYGTNQQYSVAHAMENLNISTEHLSAHNALHDAVFTA 175

Query: 169 DVYIKMMVGGSQINFGF 185
            +   + +    +++  
Sbjct: 176 HICQSLDIAQGILHYDL 192


>gi|148380237|ref|YP_001254778.1| exonuclease family protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931193|ref|YP_001384542.1| exonuclease family protein [Clostridium botulinum A str. ATCC
           19397]
 gi|153935233|ref|YP_001388058.1| exonuclease family protein [Clostridium botulinum A str. Hall]
 gi|148289721|emb|CAL83826.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502]
 gi|152927237|gb|ABS32737.1| exonuclease family protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152931147|gb|ABS36646.1| exonuclease family protein [Clostridium botulinum A str. Hall]
          Length = 253

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 93/233 (39%), Gaps = 22/233 (9%)

Query: 7   MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNS 56
           M  I+FD+E    +   +          II+IGA++L +   T  TF   + P      +
Sbjct: 1   MSYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSDLN 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P    L  +T + L    SF  ++ +F +F N+    +       D+  +   +     D
Sbjct: 58  PFVKNLTNLTMDSLNKAKSFREVYKDFLEFLNKDRNIFCIWGMT-DMKELFRNIVYYQLD 116

Query: 117 PLDPSR---IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                +    +   +     +P S N  L++  + + IT  +   H A  D+   ++V+ 
Sbjct: 117 TESMPKEYINVQAYTGKYLNYPKSINVGLSNAVELFHIT-KNNDFHNAFNDAFYTAEVFK 175

Query: 173 KMMVGGSQINFGFKTNEDRFF--KEEKKTVPNISLLKR-DKPLFTRITKEELD 222
           K+     +      TN    +  K  K  +  ++L K+ +K   T++T +E D
Sbjct: 176 KIYSEKIKTKIYKPTNNSTTYRTKNTKTKIDTVNLFKQFEKMFNTKLTLQERD 228


>gi|83815933|ref|YP_446416.1| DNA helicase II [Salinibacter ruber DSM 13855]
 gi|83757327|gb|ABC45440.1| DNA helicase II [Salinibacter ruber DSM 13855]
          Length = 1084

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 9/162 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALK-LHGIT 66
            ++ D+E T  D ++ R+ EIGA+++ D +  +R  ++   P        E L+ + G+ 
Sbjct: 689 YVMVDLEATSTDPRHCRVAEIGALKVRDGTVVDRFSELVQLPEDLTADERETLRTVCGLD 748

Query: 67  DE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRII 124
                 +    ++++++F  F +   A  +AHN  ++D   +         D    +   
Sbjct: 749 PASDFDEARPEAAVWADFCAFVD--GAPLVAHNGQRYDFRVLRRLANTHEADA-HWATTY 805

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH 165
           D L  A    P   R D   L +   +     + H AL D  
Sbjct: 806 DLLPAAHELFPDLRRYDAAHLRETL-LDDDADTAHRALADCE 846


>gi|148273408|ref|YP_001222969.1| hypothetical protein CMM_2224 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831338|emb|CAN02294.1| unnamed protein product [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 209

 Score = 81.8 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 10/152 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLHGIT 66
               D ET   ++ +     +G V++LD      T    + P    ++      ++HGI 
Sbjct: 5   FTAIDFETA--NNSSASACSVGLVKVLDG-VVVETASWLIRPPAGHDTFSVWNTRIHGIV 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++ +     ++        F  +     +AHNA+FD+G I    +     P  P   + +
Sbjct: 62  EDDVTGADGWADQLPRLMAFAGDD--HLVAHNARFDMGVIQGACKATALIP-PPYSYLCS 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
           L +ARR +      L    +  G      + H
Sbjct: 119 LQVARRTYALDSYRLPVAARAAG--FEDFAHH 148


>gi|269123524|ref|YP_003306101.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus
           moniliformis DSM 12112]
 gi|268314850|gb|ACZ01224.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus
           moniliformis DSM 12112]
          Length = 205

 Score = 81.8 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 79/199 (39%), Gaps = 40/199 (20%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT------NRTFQVFLCPNGRK 54
           MI+K     I FD+ET G++   D ++ I A+++   + T          + +    G +
Sbjct: 1   MIKK----VIFFDVETNGVNP-TDSVLSISAMKVTYDTITNKMVKLGEFDRFYFRNEGEE 55

Query: 55  NSPEALKLHGITDEFL---------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            + +AL ++G+ D+ +         K   +F+     F++F +     ++AHN +FD  F
Sbjct: 56  PNFDALNVNGLFDDEIERRRNLSLIKYAKTFNEDIVNFFEFCDNAE-HFVAHNIRFDRQF 114

Query: 106 INAELQRINKDPLDPSRIIDTLSIARR--KHPSSRN-------DLNSLCKRYGITISHRS 156
           I          P       DT+       K PS+          L      Y I +    
Sbjct: 115 I----------PFKLKYQFDTMLENIDIVKIPSNSYYSSFKWPKLMECANYYNIPVDENE 164

Query: 157 KHGALLDSHLLSDVYIKMM 175
            H ++ D  ++  V  KM+
Sbjct: 165 LHNSMYDVVIMGRVMFKML 183


>gi|227543169|ref|ZP_03973218.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227180978|gb|EEI61950.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 449

 Score = 81.8 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 7/150 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITD 67
            +  D+ET   +     IIEIG  ++L+     + T++    P       E + +HGI  
Sbjct: 105 FVAIDVETA--NDDWGSIIEIGVTKVLNGLVEEQATWRCTPPPGMEDFLDENIAIHGIRP 162

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++ +PSF+  +    +F  E     ++HNA+FD   + A     +     P+    +L
Sbjct: 163 EDIEGEPSFAQRYELVKEFTGE--LPMVSHNAQFDFTAL-ARACHASHCAAAPNEFGCSL 219

Query: 128 SIAR-RKHPSSRNDLNSLCKRYGITISHRS 156
           +++R R    + N L  +C+  GI + H  
Sbjct: 220 ALSRSRDLGFATNRLPDVCRGLGIALEHHH 249


>gi|227488565|ref|ZP_03918881.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091459|gb|EEI26771.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 449

 Score = 81.8 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 7/150 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITD 67
            +  D+ET   +     IIEIG  ++L+     + T++    P       E + +HGI  
Sbjct: 105 FVAIDVETA--NDDWGSIIEIGVTKVLNGLVEEQATWRCTPPPGMEDFLDENIAIHGIRP 162

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++ +PSF+  +    +F  E     ++HNA+FD   + A     +     P+    +L
Sbjct: 163 EDIEGEPSFAQRYELVKEFTGE--LPMVSHNAQFDFTAL-ARACHASHCAAAPNEFGCSL 219

Query: 128 SIAR-RKHPSSRNDLNSLCKRYGITISHRS 156
           +++R R    + N L  +C+  GI + H  
Sbjct: 220 ALSRSRDLGFATNRLPDVCRGLGIALEHHH 249


>gi|83311172|ref|YP_421436.1| DNA polymerase III subunit epsilon [Magnetospirillum magneticum
           AMB-1]
 gi|82946013|dbj|BAE50877.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
          Length = 306

 Score = 81.8 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 74/240 (30%), Gaps = 33/240 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL---DYSK--TNRTFQVFLCPNGRKNSPEALKLHG 64
           I  D+ETTGLD   D IIE+  V  +   D         FQ    P+      E  KL G
Sbjct: 53  IFIDLETTGLDPAKDEIIELAMVPFVYGLDGRIFEIQDAFQGLRQPSN-PIPAEITKLTG 111

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITDE +  K     I       F    A  IAHNA FD  FI       +  P   S  +
Sbjct: 112 ITDEMVAGKV----IDPAEVAAFAAPAAIVIAHNAAFDRKFIERFCPSFSTKPWGCS--M 165

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI------------ 172
             +         ++          G        H A  D H   ++              
Sbjct: 166 SQVDWTGEGFEGTKLG-----YLLGGFGLFHDGHRATDDCHAAIEILARPLPKSGVPAMG 220

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK----RDKPLFTRITKEELDEHDKTI 228
           K++    +           F  ++               R +  F  + +++L +    +
Sbjct: 221 KLLEKAREATCRVWAENSPFDLKDVLKARGYRWSDGSDGRPRAWFIDVPEDQLQQEKDFL 280


>gi|219882682|ref|YP_002477846.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
 gi|219861688|gb|ACL42029.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
          Length = 197

 Score = 81.4 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 9/157 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITD 67
            +  D E    ++K+  I +IG V++ D           + P G++N     + +HGIT 
Sbjct: 7   FVAIDFELA--NAKHSSICQIGLVKVRDGVLGKTHTHFVMPPAGQQNFGHRQIAVHGITR 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +     +  +      F    +   +AHN   +   I    + I   P  P     T 
Sbjct: 65  RMIDGADGWDLMLPRLEAF--TGDLPLVAHNVVAERSMIRQTTEAIGLTP-PPFTFYCTQ 121

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLD 163
             A+   P      LN L +  G+       H A  D
Sbjct: 122 RAAQLHLPGQESYRLNMLVESLGLPP--LQHHDAGED 156


>gi|157870698|ref|XP_001683899.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68126966|emb|CAJ05279.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 509

 Score = 81.4 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 80/223 (35%), Gaps = 33/223 (14%)

Query: 6   KMRKIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEA 59
             R   FD+E TG      D   + I E+G    L     + TF   + P  GRK  P  
Sbjct: 87  PFRVFTFDMEFTGPPVFTADGPTEDITELGLYSPL----LDETFSCLVRPVCGRKQGPGV 142

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKF-DVGFIN 107
            +L  ITD  L ++   F   + +F  F           +E+    ++H  K  DV  I 
Sbjct: 143 EELTHITDMMLEREGIPFVEAWQQFLKFVQTPQPDEISGSEERILLLSHGGKLADVSLIK 202

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPS---------SRNDLNSLCKRYGITISHRSKH 158
             L++ + +        DT+ + R  H               L  L +   I  +    H
Sbjct: 203 WTLEKFHMELPPSFVFGDTIHLIRDAHRRRPVTIDKHPPSWKLADLVQWLHIPPTL-PAH 261

Query: 159 GALLDSHLLSD-VYIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A  D+ +  D +Y  ++  G       +    RFF  E K +
Sbjct: 262 RAGNDARMTWDALYHTLLRYGDDGMTPREQLVPRFFDAEAKQL 304


>gi|229061116|ref|ZP_04198467.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH603]
 gi|228718199|gb|EEL69837.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH603]
          Length = 273

 Score = 81.4 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 64/155 (41%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++ +   K    F   + P+    +    KL GIT + L    +F  I  +F
Sbjct: 18  EIVDIGAVKIDVSTMKVIGEFSELVKPS-APLTRHTTKLTGITKKDLIGVGNFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--IIDT---LSIARRKHPSSR 138
             F   +++ +++   + D  F++ +      +     +    D    +  A  +     
Sbjct: 77  IQFIG-EDSIFVSWGKE-DYRFLSQDCTLYGVECPCMEKESRFDVQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L     + G+T   +  H AL D+   +++++K
Sbjct: 135 PSLQFAVDQLGLTWEGKQ-HRALADAENTANIFLK 168


>gi|134045738|ref|YP_001097224.1| exonuclease, RNase T and DNA polymerase III [Methanococcus
           maripaludis C5]
 gi|132663363|gb|ABO35009.1| Exonuclease, RNase T and DNA polymerase III [Methanococcus
           maripaludis C5]
          Length = 191

 Score = 81.4 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 31/188 (16%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGIT- 66
            +  D ETTGL      I ++  +   +     + F Q +L  +    S  A K+HG+T 
Sbjct: 2   YVFLDTETTGLHPGQ--IAQLSYLVTDEDLNLKKVFNQYYLVDH---MSRSAAKVHGLTM 56

Query: 67  --DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
              + L +  +F     E  D  + +++  I HN  FD+ F+ AE +R+  + +   +  
Sbjct: 57  DILDELSNGMTFEDTVDEVRD--DLEDSVIIGHNISFDIRFLKAEFERLGPEYIPKDK-F 113

Query: 125 DTLSIAR--RKHPSSRN----DLNSLCKRY------GITISHRS-------KHGALLDSH 165
            T+       K P  +      L  L +        G+  + ++        H A  D+ 
Sbjct: 114 CTMFHFTPICKLPGQKRYKRPKLVELMEFLEQCPHEGLEFTKKTYGCSDVGFHDARYDTG 173

Query: 166 LLSDVYIK 173
           +L   Y K
Sbjct: 174 ILYLCYKK 181


>gi|209154444|gb|ACI33454.1| Histone mRNA 3-exonuclease 1 [Salmo salar]
          Length = 346

 Score = 81.4 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 88/226 (38%), Gaps = 21/226 (9%)

Query: 9   KIVFDIETTGL--DSK--NDRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             V D E T    +       IIE   V L  +  +   TFQ ++ P    + S   +KL
Sbjct: 127 ICVVDFEATCEQDNPADFTHEIIEFPMVLLNTHTLEIEDTFQEYVRPEVNTQLSEFCVKL 186

Query: 63  HGITDEFLKDKPSFSSIFSEFW-----DFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            GIT + + D  +F  +  +            +    +  +  +D+        R+N   
Sbjct: 187 TGITQKMVDDADTFPDVLEQVVLWLQEKELGTKYKYTLLTDGSWDMSKFMNTQCRLNSLR 246

Query: 118 LDP----SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                     I  L     K P ++  L+S+ ++ G+    R  H  L DS  ++ + ++
Sbjct: 247 YPQFAKKWINIKKLYGNFYKVPRTQTKLSSMLEKLGLKYEGR-PHSGLDDSRNIAHIAMR 305

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           M+  G Q+        +R  + + +TVP+ + ++   P  T  +++
Sbjct: 306 MLQDGCQLRI-----NERMHEGQLRTVPSSAPVEGAPPPHTPRSRD 346


>gi|292628026|ref|XP_002666829.1| PREDICTED: probable transcription factor PML-like isoform 1 [Danio
           rerio]
 gi|326679985|ref|XP_003201423.1| PREDICTED: probable transcription factor PML-like isoform 2 [Danio
           rerio]
          Length = 235

 Score = 81.4 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 78/198 (39%), Gaps = 28/198 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68
           + FD+ETTGLDS +  I+++ AV          TF +F+ P  R     A ++ G + + 
Sbjct: 13  VFFDLETTGLDS-SCEIVQLAAVSG------GHTFNLFMVP-RRPFQRGASRITGFSVKH 64

Query: 69  ---FLKDKP----SFSSIFSEFWDFFNEQNAEWI-AHN-AKFDVGFINAELQRINKDPLD 119
              FL  +P    S       F  F    +   +  HN  +FD   +   L   +     
Sbjct: 65  QRLFLHRRPLLTSSLKEALLSFISFLRMLDHPLLLGHNIRRFDCPVLARALDEFSLRSHF 124

Query: 120 PSR---IIDTLSIARRK---HPSSRNDLNSLCK-RYGITISHRSKHGALLDSHLLSDVYI 172
                  +DTL +AR+    H        SL K   G++    + H AL D   L  +Y 
Sbjct: 125 QREVSGFVDTLPLARQLLKDHGLQSFKQESLVKNLLGVSY---AAHNALEDVQALQKLYW 181

Query: 173 KMMVGGSQINFGFKTNED 190
           K+    +QI     T + 
Sbjct: 182 KLKPSANQIQQHTFTLDS 199


>gi|213609103|ref|ZP_03368929.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 89

 Score = 81.4 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 151 TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
             S R+ HGALLD+ +L++VY+ M  G + + F  +    R  ++ + T+  I + +  +
Sbjct: 1   DNSKRTLHGALLDAQILAEVYLAMTGGQTSMTFAMEGETQR--QQGEATIQRI-VRQASR 57

Query: 211 PLFTRITKEELDEHDKTI---QTLGKNAIWD 238
                 ++EEL  H+  +   Q  G + +W 
Sbjct: 58  LRVVFASEEELAAHESRLDLVQKKGGSCLWR 88


>gi|289168125|ref|YP_003446394.1| DNA polymerase III, epsilon chain [Streptococcus mitis B6]
 gi|288907692|emb|CBJ22529.1| DNA polymerase III, epsilon chain [Streptococcus mitis B6]
          Length = 196

 Score = 81.4 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 62/181 (34%), Gaps = 19/181 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R      I FD+E    +       +I++ AV   D  + +  +  ++          
Sbjct: 1   MERLED--YIAFDLE---FNQHEGQTHLIQVSAVRFRDGQEID-AYDSYVH-TSVPLKSF 53

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDP 117
              L GIT E LKD P    +  +F +F        + +NA   D+  +      ++   
Sbjct: 54  INGLTGITAETLKDAPPVEKVIKDFQEFVGS--LPMVGYNAAKSDLPILAEH--GLDYST 109

Query: 118 LDPSRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                + D     R    H  +   L ++    G        H +L D+ + + VY   +
Sbjct: 110 QYKVDLYDEAFERRSSDLHGIANLKLQTVASFLGF---QGQSHNSLEDARMTARVYESFL 166

Query: 176 V 176
            
Sbjct: 167 E 167


>gi|45358454|ref|NP_988011.1| exonuclease [Methanococcus maripaludis S2]
 gi|44921212|emb|CAF30447.1| Exonuclease [Methanococcus maripaludis S2]
          Length = 191

 Score = 81.4 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 72/187 (38%), Gaps = 29/187 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL      I ++  +   +     + F  +   +    S  A K+HG+T E
Sbjct: 2   YVFLDTETTGLHPGQ--IAQLSYLVTDEDLNLKKVFNQY--YSVDHMSRSAAKVHGLTVE 57

Query: 69  ---FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
               L +  +F     E  D  + +++  I HN  FD+ F+ AE +R+  + +   +   
Sbjct: 58  ILDELSNGMTFEDTVDEVRD--DLEDSVIIGHNISFDIRFLKAEFERLGPEYVPKDK-FC 114

Query: 126 TLSIAR--RKHPSSRN----DLNSLCKRY------GITISHRS-------KHGALLDSHL 166
           T+       K P  +      L  L +        G+  + ++        H A  D+ +
Sbjct: 115 TMFHFTPICKLPGQKRYKRPKLVELMEFLEQCPNEGLEFTKKAYGCSDVGFHDARYDTGI 174

Query: 167 LSDVYIK 173
           L   Y K
Sbjct: 175 LYLCYKK 181


>gi|269468419|gb|EEZ80084.1| exonuclease I [uncultured SUP05 cluster bacterium]
          Length = 471

 Score = 81.4 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 56/178 (31%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLK 71
           D ET G+  K DRI +   +   +          +  P       PEA  + GI+ +  +
Sbjct: 8   DYETFGISPKTDRISQFAGIRTDENLNILDEHMFYCKPTHDCLPAPEACAVTGISPQDCE 67

Query: 72  DKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR-----II 124
            K         +    F   N   + +N+ +FD  F    L R   DP            
Sbjct: 68  QKGVIEHEFIKKINSEFTTPNTCIVGYNSIRFDDEFTRYTLYRNFIDPYAWHWKDGNTRW 127

Query: 125 DTLSIARRKHPSSR---------------NDLNSLCKRYGITISHRSKHGALLDSHLL 167
           D L + R  +   +                 L+ L    GI   H + H AL D    
Sbjct: 128 DILDVVRLCYALKKDNSLKWVHNEEGKPVFKLDQLSLANGIE--HANAHDALADVRAT 183


>gi|25011833|ref|NP_736228.1| DNA polymerase III subunit epsilon [Streptococcus agalactiae
           NEM316]
 gi|77414413|ref|ZP_00790566.1| exonuclease [Streptococcus agalactiae 515]
 gi|24413374|emb|CAD47453.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159528|gb|EAO70686.1| exonuclease [Streptococcus agalactiae 515]
          Length = 195

 Score = 81.4 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 23/181 (12%)

Query: 3   RKNKMRKIVFDIE--TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K     I FD+E  T G   ++  II++ AV+  ++ +    F  ++            
Sbjct: 1   MKQLQEYIAFDLEFNTVG---EHSHIIQVSAVKYSNHQEIA-LFDTYVH-TKVPLQSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT   +   P   +I ++   F    +   I +N    D+  +       N   L 
Sbjct: 56  GLTGITARDIIGAPKIETILTDLQSFVG--DTPLIGYNGHKSDLPLLVE-----NGLDLT 108

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +D    A  +  +  N      L ++    GI       H +L D+ + + VY K 
Sbjct: 109 SQYQVDLYDEAFVRRSTDLNGIVNLKLTTVADFLGIK---GKAHNSLEDARMTARVYEKF 165

Query: 175 M 175
           +
Sbjct: 166 L 166


>gi|292669904|ref|ZP_06603330.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648701|gb|EFF66673.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 219

 Score = 81.4 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 75/184 (40%), Gaps = 22/184 (11%)

Query: 7   MRKIVFDIETTGLDSK-----------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M+ IV D+E   ++             N  IIEIGAV L +  +    FQ ++CP     
Sbjct: 1   MKHIVVDLE---MNPVSKEYREVRRKLNGEIIEIGAVRLNENYEQEDEFQCYVCPEYGMV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
                +L GIT E ++  P+FS  F  F  +      +  + +   D+  +  E  R+  
Sbjct: 58  KKHITELTGITQEKVEGHPAFSDSFHSFVAWIGAAETKIYSWSMS-DIKQLRKEC-RLKL 115

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDL-NSLCKRYGITISHRSK----HGALLDSHLLSDV 170
              D +  +DT  +  ++    R  L NSL  ++ +    R      H AL D+   S V
Sbjct: 116 PDFDVN-WLDTRWVDLQQEFDDRLGLHNSLALKHALGAMGRRFEGSQHSALADAVNTSAV 174

Query: 171 YIKM 174
              M
Sbjct: 175 LALM 178


>gi|255658850|ref|ZP_05404259.1| putative exonuclease [Mitsuokella multacida DSM 20544]
 gi|260849253|gb|EEX69260.1| putative exonuclease [Mitsuokella multacida DSM 20544]
          Length = 219

 Score = 81.4 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 26/186 (13%)

Query: 7   MRKIVFDIETTGLDSK-----------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M+ +V D+E   ++             N+ +IEIGAV L +  +    FQ ++ P     
Sbjct: 1   MKHVVVDLE---MNPVSREFREVRRKLNEEVIEIGAVRLDENFQQEAEFQCYVKPEYGPI 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
                 L GIT   + DK ++++ F +F D+  E+  +  + +   D+  + +E  R   
Sbjct: 58  KKHITSLTGITQAMVADKKTYAACFQDFVDWVGEEETKIYSWSMS-DIKQLRSEC-RYKL 115

Query: 116 DPLD----PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR---SKHGALLDSHLLS 168
              D      R +D       +     N L +L    G  + H+   ++H AL D+   S
Sbjct: 116 PDFDIEWLNERWVDLQQEFDDRL-GLHNSL-ALKHALG-AMDHKFEGTQHTALADAINTS 172

Query: 169 DVYIKM 174
            +   M
Sbjct: 173 AILTLM 178


>gi|88797304|ref|ZP_01112894.1| putative DNA polymerase, exonuclease activity [Reinekea sp. MED297]
 gi|88780173|gb|EAR11358.1| putative DNA polymerase, exonuclease activity [Reinekea sp. MED297]
          Length = 192

 Score = 81.4 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 17/180 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNG--RKNSPEALKLHG 64
           R +V D+E TGL+++ D II  G V +             +  P      +   +  +H 
Sbjct: 16  RVLVLDLEMTGLNAQEDSIISAGWVVIEQGRIELSLAGHQYFQPTAMMASDVSASAHIHM 75

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSR 122
           ITD  L+ +         +    N       W+ H+A  D+ F+    QR++   L    
Sbjct: 76  ITDHLLEQQ---GQPLGHWLQRLNGDLLADRWVFHHAPIDMAFLKMFSQRLDIV-LPSVT 131

Query: 123 IIDTLSIARRKHPS------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           I DT+ + +++          +  L +   R+ +  ++R  H AL D+   +++Y+ +M 
Sbjct: 132 IEDTVLLEQKRFSDLTLESQQQLSLTACRARHRLP-AYRQHH-ALSDALATAELYLALMT 189


>gi|311232722|gb|ADP85576.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio vulgaris
           RCH1]
          Length = 251

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 25/185 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+E TGL  + D II +  V +        R F+  + P+      +A+ +HG+  
Sbjct: 48  FVVLDLEMTGLVPRRDAIIAVAGVTMRGERILAGRCFEAKMRPH-LPPEEDAIAVHGLLP 106

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +        +   + F  F    ++     +   D  F++A  QR    P  P R +D  
Sbjct: 107 DETATHDDPAESLAAFRTFCG--DSVPAGWHVGLDAAFLDAAAQRHGVRPW-PRRTLDV- 162

Query: 128 SIARRKHPSSRN--------------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              R  H + R+              DL ++ + + I ++    H A  D+ L + V  +
Sbjct: 163 ---RGLHLALRHRLPARAAALATKDADLYAVARVFDIDVAD--AHDATGDAWLTALVLQR 217

Query: 174 MMVGG 178
           ++V G
Sbjct: 218 LLVHG 222


>gi|213646704|ref|ZP_03376757.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 154

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 9/131 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL   +  I+EI  ++   +   N      + P  +    EA+ +HGIT+E
Sbjct: 20  YLFIDTETTGL-GDDAEIVEICIIDSHGFIMLN----TLIKPT-KPIPDEAIAIHGITNE 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +   P+++ I     + F      ++ +NA FD+  I        +       ++   S
Sbjct: 74  MVAFAPAWTDICGAVEELFRRFG--FVIYNADFDLRLIRQTYALNERPSEGAPWMLAAHS 131

Query: 129 -IARRKHPSSR 138
             A + +   R
Sbjct: 132 VCAMKLYAEYR 142


>gi|153939051|ref|YP_001391011.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           F str. Langeland]
 gi|152934947|gb|ABS40445.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           F str. Langeland]
 gi|295319069|gb|ADF99446.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           F str. 230613]
          Length = 195

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 66/194 (34%), Gaps = 33/194 (17%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTF---QVFLCPNGRKNSPEALKL 62
           M+KI  D ETTGL+     II++   V  +++    + F     F   +       A  +
Sbjct: 1   MKKIFIDTETTGLEP--GEIIQLTYCVCDINFRGEEKVFFAKNFFFDVDY--IEESAEAI 56

Query: 63  HGITDEFLK---DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           HG + E LK       F  + SE     + ++  +IAHN  FD  F+ AE  R+N     
Sbjct: 57  HGFSVEKLKILSKGKKFKDLASEISS--DLKDGIFIAHNVNFDRKFVTAEFNRLNDMNWI 114

Query: 120 PSRIIDTLSIAR-------RKHPSSRNDLNSLCKRYGIT-------------ISHRSKHG 159
           P     T+   +       R     +  L        I                    H 
Sbjct: 115 PKEFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLNIDKKIVLKGAKKLFNCDDVGFHD 174

Query: 160 ALLDSHLLSDVYIK 173
           A  D   L   Y +
Sbjct: 175 ARYDVAALVSCYYR 188


>gi|326385272|ref|ZP_08206935.1| DNA polymerase III subunit epsilon [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196015|gb|EGD53226.1| DNA polymerase III subunit epsilon [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 236

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 17/180 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNG-----RKNSPEALK 61
           R +  D+ETTGL++     +EIGAVE+L+        +V    P+       K SP+AL 
Sbjct: 4   RYVALDLETTGLNTLTACPLEIGAVEILENDPRGPYGRVLGFVPHTPDAVLHKASPDALA 63

Query: 62  LHGITD-----EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           ++   +       L+   + + +  E  +    + A  +  N  +D   + A L     D
Sbjct: 64  VNRFYERRLYAAMLRPAET-ADMMLELVELL--RGATLVGANVAYDAAILWAWLATFTDD 120

Query: 117 --PLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             P    R+ D  L+     +      L S C+ + +     + H AL D+++ +DV++ 
Sbjct: 121 ETPPWHFRLYDVELATEVALNLDRTPSLRSSCELWNVDTDRDAAHTALGDAYMAADVFLA 180


>gi|38233670|ref|NP_939437.1| DNA polymerase III subunit epsilon [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38199931|emb|CAE49599.1| Putative DNA polymerase [Corynebacterium diphtheriae]
          Length = 234

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 17/166 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETT  +    RI+    V +     +       L   G +    A K+HGI+ E+ +
Sbjct: 19  FDLETTSANPFEARIVTSALVRI---DSSGAHPVELLADPGVEIPEAASKVHGISTEYAR 75

Query: 72  DKPSFSSI-----FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +              E +    E+    + +NA +D+  +    +++  D +    + D 
Sbjct: 76  EHGEPHEAVLKRTVDEIYAA-WEEGFTLVVYNAPYDLTVL----RQLTGDFVVKGPVYDP 130

Query: 127 LSIARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             I R        +  L  LC  YG+ + +   H A  D+   + +
Sbjct: 131 YLIDRIMDRFRKGKRTLTDLCSVYGVRMDN--AHEATSDALAAARI 174


>gi|242086513|ref|XP_002439089.1| hypothetical protein SORBIDRAFT_09g000300 [Sorghum bicolor]
 gi|241944374|gb|EES17519.1| hypothetical protein SORBIDRAFT_09g000300 [Sorghum bicolor]
          Length = 319

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 18/173 (10%)

Query: 7   MRKIVF-DIETTGLDSKNDR-IIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLH 63
           MR+IVF D+ETT         ++E GA+ +         ++   + P        ++ + 
Sbjct: 8   MREIVFFDVETTAPTPAGRWWLLEFGAILVCPRKLVEVASYDTLIRPGDL-----SVAVT 62

Query: 64  -GITD-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120
              +D E +   P F  +  + ++  + +   W  HN  +FD   I      I +   +P
Sbjct: 63  KRFSDVEAIASAPPFKDVADKIFEILDGR--VWAGHNIQRFDCPRIREAFADIGRPAPEP 120

Query: 121 SRIIDTLSIARRKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           + +ID+L++          DL   +L   +GI    + KH +L D+ +  +V 
Sbjct: 121 AGVIDSLNVLAADFGRRAGDLKMATLATYFGI---GKQKHRSLDDARMNLEVL 170


>gi|238019461|ref|ZP_04599887.1| hypothetical protein VEIDISOL_01330 [Veillonella dispar ATCC 17748]
 gi|237864160|gb|EEP65450.1| hypothetical protein VEIDISOL_01330 [Veillonella dispar ATCC 17748]
          Length = 327

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 23/195 (11%)

Query: 7   MRKIVFDIE--------------TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
           M  IVFD+E              T         II+IGAV+L +       F +F+ P  
Sbjct: 1   MNYIVFDLEWNQPYSNDISFMKRT--KMPLTGEIIQIGAVKLNEKMDIVDHFTMFIKPQY 58

Query: 53  RK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAEL 110
                    +L GIT   L     F +    F ++  ++            D+  +   L
Sbjct: 59  LPRMHKHVRELTGITSRELDHGVPFKTAMQYFQNWCGDEYMLLSWG---SDDILILRENL 115

Query: 111 QRINKDPLDPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                  L   + +D   +   +R   S +  +    +   I+  H S H AL D+   +
Sbjct: 116 MLHRMKALSYDQWVDAQMIYSYQRYGTSQQYSVAHAMEDLNISTEHLSAHNALHDAVFTA 175

Query: 169 DVYIKMMVGGSQINF 183
            +  K+ +    +++
Sbjct: 176 HICQKLDIPQGILHY 190


>gi|153209510|ref|ZP_01947415.1| exonuclease [Coxiella burnetii 'MSU Goat Q177']
 gi|212218768|ref|YP_002305555.1| exodeoxyribonuclease I [Coxiella burnetii CbuK_Q154]
 gi|120575335|gb|EAX31959.1| exonuclease [Coxiella burnetii 'MSU Goat Q177']
 gi|212013030|gb|ACJ20410.1| exodeoxyribonuclease I [Coxiella burnetii CbuK_Q154]
          Length = 458

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 88/270 (32%), Gaps = 40/270 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEA 59
           +  ++   + +D+ETTGL+   D+II+  A+   +        ++ +   P+    SPEA
Sbjct: 1   MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILIRLNPD-VIPSPEA 59

Query: 60  LKLHGIT-DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDP 117
           + +H  + D+ L  K        E     N      + +N   FD  F+     R    P
Sbjct: 60  MIIHRFSIDQMLSGKAEI-EAIREIHQSVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPP 118

Query: 118 LDP-----SRIIDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALL 162
                      +D   +    +    N           L +L K     ++    H A++
Sbjct: 119 YTHQYDNFCGRMDLYPLTILYYLFKPNALNWPDPFDLKLENLSKA--NQLAEGQAHNAMV 176

Query: 163 DSH---LLSDVYIKMMVGGS-QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
           D      L+ + +         I +  K  E +   +    + +      +  L   +  
Sbjct: 177 DVEASVALAKLLMNQEAMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQGVFG 236

Query: 219 EELD---------EHDKTIQTLGKNAIWDR 239
            +L          +H+          +W R
Sbjct: 237 AQLAYQAPVICLGQHNHY----KNQCLWLR 262


>gi|281424647|ref|ZP_06255560.1| putative ATP-dependent DNA helicase [Prevotella oris F0302]
 gi|281401235|gb|EFB32066.1| putative ATP-dependent DNA helicase [Prevotella oris F0302]
          Length = 906

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 80/218 (36%), Gaps = 40/218 (18%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +FD ETTGLD  +D I++I AV++ + +        + L  + R+             E 
Sbjct: 509 IFDTETTGLDVFHDDILQIAAVKVRNGAVVPGSALSLHLE-SDREIP-----------EM 556

Query: 70  LKD--KPSFS-----------SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           L D   P                   F D+   +    + HNA +D+  +   L+R   +
Sbjct: 557 LGDIVNPIIEERRNQTLLPRREALQRFVDY--ARGTVLLGHNADYDIHILANNLRREMPE 614

Query: 117 PLDPSR---IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV-- 170
              P+      D+L + R   P  R   L  L +   + +   + H A  D +    +  
Sbjct: 615 TALPNELSDYFDSLHLIRLLRPGLRQYKLKYLLEV--LHLEGENSHLADADVNATQSLVA 672

Query: 171 YI----KMMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204
           +     K +VG  Q   G K  ++R        +P+  
Sbjct: 673 FCYDKAKEVVGEQQAFIGHKRVQERIITLRNNYLPHYR 710


>gi|251780447|ref|ZP_04823367.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243084762|gb|EES50652.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 204

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 69/191 (36%), Gaps = 36/191 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPNGRKNSPEALKL 62
           M+ + FD ETT +   +  I ++  + +   SK    T + F   +     + +P A ++
Sbjct: 1   MKLLFFDTETTSIKPGS--ICQLSYITVDASSKPQITTGKNFFFTVD----EMNPSAQEI 54

Query: 63  HGITDE---FLKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           HG + E    L D   F  +  EF+ DF        I HN  FD+ F+  EL  + +D L
Sbjct: 55  HGFSLEKLYELSDGQYFEDLVPEFFKDFIEAD--FLIGHNVNFDIRFLKHELSLLGEDFL 112

Query: 119 DPSRIIDTLSIARRKHPSSR-------NDLNSLCKRYGITISH------------RSKHG 159
                  T+   +      +         L  +    GIT                + H 
Sbjct: 113 PKHS-FCTMIYYKDICKMPKANGEIKNPKLEEVVNFLGITKDQITKTSDKLFQGSGNYHD 171

Query: 160 ALLDSHLLSDV 170
           A  D+     V
Sbjct: 172 ARFDTAATYLV 182


>gi|226949657|ref|YP_002804748.1| exonuclease family protein [Clostridium botulinum A2 str. Kyoto]
 gi|226843422|gb|ACO86088.1| exonuclease family protein [Clostridium botulinum A2 str. Kyoto]
          Length = 253

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 92/233 (39%), Gaps = 22/233 (9%)

Query: 7   MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNS 56
           M  I+FD+E    +   +          II+IGA++L +   T  TF   + P      +
Sbjct: 1   MNYIIFDLE---FNQGYNNKIEIKCPFEIIQIGAIKLNENFTTIDTFNALIKPEIYSNLN 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P    L  +T + L     F  ++ +F +F N+    +       D+  +   +     D
Sbjct: 58  PFVKNLTNLTMDSLNKANPFREVYKDFLEFLNKNRNIFCIWGMT-DMKELFRNIVYYELD 116

Query: 117 PLDPSR---IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                +    +   +     +P S N  L++  + + IT  +   H A  D+   ++V+ 
Sbjct: 117 TESMPKEYINVQAYTGKYLNYPKSINVGLSNAVELFHIT-KNNDFHNAFNDAFYTAEVFK 175

Query: 173 KMMVGGSQINFGFKTNEDRFF--KEEKKTVPNISLLKR-DKPLFTRITKEELD 222
           K+     +      TN    +  K  K  +  +SL K+ +K   T++T +E D
Sbjct: 176 KIYSEKIKTKIYKPTNNSTTYRNKNTKTRIDTVSLFKQFEKMFNTKLTLQEQD 228


>gi|226349765|ref|YP_002776879.1| putative exonuclease [Rhodococcus opacus B4]
 gi|226245680|dbj|BAH56027.1| putative exonuclease [Rhodococcus opacus B4]
          Length = 240

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 23/171 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ET+ LD     I+E+  ++    +    T    + P   +  P A  +HGI+   
Sbjct: 41  VILDTETSDLD---GSILEVAVIDAATGAVLLDT---LVDPGDVQIHPAAAAVHGISAAQ 94

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRIIDT 126
           L   P + ++FS         +   +A+NA FD   I  +  R   DPL      R    
Sbjct: 95  LIGAPDWPTVFSALAAV--TADRVVLAYNASFDQSRIVYDCHRHGLDPLHLADTERWGCV 152

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +    +     +N          I +     H A  D+     V   +  G
Sbjct: 153 MVKRSQAEGVEKN----------IRLDG--AHRACGDAEAARAVLQGIADG 191


>gi|150402066|ref|YP_001329360.1| exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C7]
 gi|150033096|gb|ABR65209.1| Exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C7]
          Length = 190

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 29/187 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL      I ++  +   +     + F  +   +  + S  A K+HG+T E
Sbjct: 2   YVFLDTETTGLHPGQ--IAQLSYLVTDEDLNLKKVFNQY--YSVDRMSRSAAKIHGLTME 57

Query: 69  ---FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
               L +  +F     E  D  + +++  I HN  FD+ F+  E +R+  + +   +   
Sbjct: 58  ILDELSNGMTFEDTVDEVRD--DLEDSIIIGHNISFDIRFLKTEFERLGPEYVPKDK-FC 114

Query: 126 TLSIAR--RKHPSSRN----DLNSLCKRY------GITISHRS-------KHGALLDSHL 166
           T+       K P  +      L  L +        G+  +  +        H A  D+ +
Sbjct: 115 TMFHFTPICKLPGQKRYKRPKLVELMEFLEQCPHEGLEFTKEAYGCSDVGFHDARYDTGI 174

Query: 167 LSDVYIK 173
           L   Y K
Sbjct: 175 LYLCYKK 181


>gi|322806628|emb|CBZ04197.1| putative DNA polymerase III epsilon chain [Clostridium botulinum
           H04402 065]
          Length = 253

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 20/232 (8%)

Query: 7   MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNS 56
           M  I+FD+E    +   +          II+IGA++L +   T  TF   + P      +
Sbjct: 1   MNYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSDLN 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P    L  +T + L    SF  ++ +F  F N+    +               +      
Sbjct: 58  PFVKNLTNLTMDSLNKAKSFREVYKDFLKFLNKDRNIFCIWGMTDMKELFRNIVYYEFHT 117

Query: 117 PLDPSRIIDTLSIARRK--HPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              P   I+  +   +   +P S N  L++  + + IT  +   H A  D+   ++V+ K
Sbjct: 118 ESMPKEYINVQAYTGKYLNYPKSINVGLSNAVELFHIT-KNNDFHNAFNDAFYTAEVFKK 176

Query: 174 MMVGGSQINFGFKTNEDRFF--KEEKKTVPNISLLKR-DKPLFTRITKEELD 222
           +     +      TN    +  K  K  +  +SL K+ +K   T++T +E D
Sbjct: 177 IYSEKIKTKIYKPTNNSTTYRTKNTKTKIDTVSLFKQFEKMFNTKLTLQEQD 228


>gi|307705111|ref|ZP_07641989.1| DNA polymerase III, epsilon chain [Streptococcus mitis SK597]
 gi|307621335|gb|EFO00394.1| DNA polymerase III, epsilon chain [Streptococcus mitis SK597]
          Length = 196

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 60/184 (32%), Gaps = 25/184 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R      I FD+E    +       +I++ AV   D  + +  +  ++          
Sbjct: 1   MERLED--YIAFDLE---FNQHEGQTHLIQVSAVRFRDGQEID-AYDSYVH-TNVPLKSF 53

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDP 117
              L GIT E LKD P    +  +F +F        + +NA   D+  +           
Sbjct: 54  INGLTGITAETLKDAPPVEKVIKDFQEFVGS--LPMVGYNAVKSDLPILAEH-----GLD 106

Query: 118 LDPSRIIDTLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 +D    A        H  +   L ++    G        H +L D+ + + VY 
Sbjct: 107 YSQQYKVDLYDEAFERRSSDLHGIANLKLQTVASFLGF---QGQSHNSLEDARMTARVYE 163

Query: 173 KMMV 176
             + 
Sbjct: 164 SFLE 167


>gi|229104066|ref|ZP_04234741.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock3-28]
 gi|228679346|gb|EEL33548.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock3-28]
          Length = 273

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 80/211 (37%), Gaps = 21/211 (9%)

Query: 25  RIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++ +   K    F   + P+    +    KL GIT + L     F  I  +F
Sbjct: 18  EIVDIGAVKIDVSTMKVIGEFSELVKPS-APLTRHTTKLTGITKKDLIGVEKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-------LSIARRKHPS 136
             F   +++ +I+   + D  F++ +      +   P    D+       +  A  +   
Sbjct: 77  IQFIG-EDSVFISWGKE-DYHFLSHDCTLHGLE--CPCMEKDSRFDLQKFVFQAYEELFE 132

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEE 196
               L    ++ G+T   +  H AL D+   +++ +K+      IN  +K + +    + 
Sbjct: 133 HTPSLQFAVEQLGLTWEGKQ-HRALADAENTANILLKI-YSERDINKRYKRHGELELVKN 190

Query: 197 KKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
            K         R          +EL +H + 
Sbjct: 191 GKLTEKAKKKMRKWVF------KELKKHAER 215


>gi|46578859|ref|YP_009667.1| exonulcease [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448271|gb|AAS94926.1| exonulcease, putative [Desulfovibrio vulgaris str. Hildenborough]
          Length = 244

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 25/185 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+E TGL  + D II +  V +        R F+  + P+      +A+ +HG+  
Sbjct: 41  FVVLDLEMTGLVPRRDAIIAVAGVTMRGERILAGRCFEAKMRPH-LPPEEDAIAVHGLLP 99

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +        +   + F  F    ++     +   D  F++A  QR    P  P R +D  
Sbjct: 100 DETATHDDPAESLAAFRTFCG--DSVPAGWHVGLDAAFLDAAAQRHGVRPW-PRRTLDV- 155

Query: 128 SIARRKHPSSRN--------------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              R  H + R+              DL ++ + + I ++    H A  D+ L + V  +
Sbjct: 156 ---RGLHLALRHRLPARAAALATKDADLYAVARVFDIDVAD--AHDATGDAWLTALVLQR 210

Query: 174 MMVGG 178
           ++V G
Sbjct: 211 LLVHG 215


>gi|307709187|ref|ZP_07645646.1| DNA polymerase III epsilon subunit [Streptococcus mitis SK564]
 gi|307620133|gb|EFN99250.1| DNA polymerase III epsilon subunit [Streptococcus mitis SK564]
          Length = 196

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 59/179 (32%), Gaps = 25/179 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R      I FD+E    +       +I++ AV   D  + +  +  ++          
Sbjct: 1   MERLED--YIAFDLE---FNQHEGQTHLIQVSAVRFRDGQEID-AYDSYVH-TSVPLKSF 53

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDP 117
              L GIT E LKD P    +  +F +F        + +NA   D+  +           
Sbjct: 54  INGLTGITAETLKDAPPVEKVIKDFQEFVGS--LPMVGYNAAKSDLPILAEH-----GLD 106

Query: 118 LDPSRIIDTLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                 +D    A        H  +   L ++    G        H +L D+ + + VY
Sbjct: 107 YSQQYKVDLYDEAFERRSSDLHGIANLKLQTVASFLGF---QGQSHNSLEDARMTARVY 162


>gi|268679542|ref|YP_003303973.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617573|gb|ACZ11938.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 292

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 26/183 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ I+ D ETTG+  + DRI ++  + L             LC      S EA+ +H IT
Sbjct: 1   MKIILLDTETTGI-YEKDRICQLAFLVLN-EELEVEEIHNDLCQPPVMISYEAMAVHHIT 58

Query: 67  DEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            E +  + S      +    +  N      + HNA FD+  +  E        +    ++
Sbjct: 59  PERVAHEVSCIQTRAYQRLLE-LNTPYNLLVIHNASFDLTMLEKE------GFVSQMNLV 111

Query: 125 DTLSIARRKHP-SSRNDLNSLCKRYGITISHR------------SKHGALLDSHLLSDVY 171
           DT  I R  +P      L    KRY   + H+              H AL D  +L  ++
Sbjct: 112 DTFRILRAYYPNEGSFSLQ--YKRYQWGLYHQEATFQKKHTVSIEAHDALGDVVVLKHLF 169

Query: 172 IKM 174
            K+
Sbjct: 170 EKL 172


>gi|261855671|ref|YP_003262954.1| exodeoxyribonuclease I [Halothiobacillus neapolitanus c2]
 gi|261836140|gb|ACX95907.1| Exodeoxyribonuclease I [Halothiobacillus neapolitanus c2]
          Length = 495

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 69/204 (33%), Gaps = 29/204 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR---TFQVFLCPNGRKNSPEALKLH 63
           M  + +D ETTG D + DR I+  A+   D  +      T    L P    + P+A+ + 
Sbjct: 1   MSFLFYDFETTGSDPRCDRPIQFAALRTNDELEPIDSPLTLYATLSPEVLPH-PQAVLVT 59

Query: 64  GITDEFLK--DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP 120
           GI  + L        +   +       +     +  N+ +FD   +     R  +DP   
Sbjct: 60  GILPQTLASSGGRPEAEFAALIHAEMMQPGTCAVGFNSLRFDAELLRFMFWRNLRDPYAH 119

Query: 121 SRI--------IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGAL 161
                      +D     R   P   +            L +L K     I+H + H AL
Sbjct: 120 EWKSGNSRWDVLDAARAFRLLRPEGIHWPTDEQGAPTLRLEALTKV--NVIAHANAHDAL 177

Query: 162 LDSHLLSDVYIKMMVGGSQINFGF 185
            D       + ++M   S   F +
Sbjct: 178 GDVEAT-LAFARLMRAQSPKLFEY 200


>gi|153940748|ref|YP_001391589.1| exonuclease family protein [Clostridium botulinum F str. Langeland]
 gi|152936644|gb|ABS42142.1| exonuclease family protein [Clostridium botulinum F str. Langeland]
 gi|295319617|gb|ADF99994.1| exonuclease family protein [Clostridium botulinum F str. 230613]
          Length = 253

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 92/233 (39%), Gaps = 22/233 (9%)

Query: 7   MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNS 56
           M  I+FD+E    +   +          II+IGA++L +   T  TF   + P      +
Sbjct: 1   MNYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSDLN 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P    L  +T + L    SF  ++ +F  F N+    +       D+  +   +     D
Sbjct: 58  PFVKNLTNLTMDSLNKAKSFREVYKDFLKFLNKDRNIFCIWGMT-DMKELFRNIVYYQLD 116

Query: 117 PLDPSR---IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                +    +   +     +P S N  L++  + + IT  +   H A  D+   ++V+ 
Sbjct: 117 TESMPKEYINVQAYTGKYLNYPKSINVGLSNAVQLFHIT-KNNDFHNAFNDAFYTAEVFK 175

Query: 173 KMMVGGSQINFGFKTNEDRFF--KEEKKTVPNISLLKR-DKPLFTRITKEELD 222
           K+     +      TN    +  K  K  +  ++L K+ +K   T++T +E D
Sbjct: 176 KIYSEKMRTKIYKPTNNSTTYRTKNTKTKIDTVNLFKQFEKMFNTKLTLQEQD 228


>gi|221632413|ref|YP_002521634.1| putative DNA polymerase III, epsilon chain [Thermomicrobium roseum
           DSM 5159]
 gi|221156357|gb|ACM05484.1| putative DNA polymerase III, epsilon chain (EC ) [Thermomicrobium
           roseum DSM 5159]
          Length = 190

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 13/148 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTG+ S+ D++IE+  ++           +  + P+     P AL++HG+++  
Sbjct: 21  VILDTETTGIRSQ-DQVIELAVLDTHGNVL----LETLVKPSC-PIDPAALRVHGLSEAH 74

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P +  ++ E      ++    + +NA FD   I    +       D S        
Sbjct: 75  LAHAPEWPVVYRELR-VIFDRARLIVTYNAPFDRRLIEQTCRCYGLSLPDLSWDCAMRRF 133

Query: 130 ARRKHPSS------RNDLNSLCKRYGIT 151
           A    P         + L+   +R GI 
Sbjct: 134 AEYAGPPPTESWRNYHRLSEALQRLGIP 161


>gi|294508356|ref|YP_003572414.1| DNA helicase II [Salinibacter ruber M8]
 gi|294344684|emb|CBH25462.1| DNA helicase II [Salinibacter ruber M8]
          Length = 1227

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 9/162 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALK-LHGIT 66
            ++ D+E T  D ++ R+ EIGA+++ D +  +R  ++   P        E L+ + G+ 
Sbjct: 827 YVMVDLEATSTDPRHCRVAEIGALKVRDGTVVDRFSELVQLPEDLTADERETLRTVCGLD 886

Query: 67  DE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRII 124
                 +    + ++++F DF     A  +AHN  ++D   +         D    +   
Sbjct: 887 PASDFDEARPEADVWADFCDF--ADTAPLVAHNGQRYDFRVLRRLANTHEADA-RWATTY 943

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH 165
           D L  A    P   R D   L +   +     + H AL D  
Sbjct: 944 DLLPAAHELFPDLRRYDAAHLRETL-LDDDADTAHRALADCE 984


>gi|168180760|ref|ZP_02615424.1| exonuclease family protein [Clostridium botulinum NCTC 2916]
 gi|182668520|gb|EDT80499.1| exonuclease family protein [Clostridium botulinum NCTC 2916]
          Length = 253

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 92/233 (39%), Gaps = 22/233 (9%)

Query: 7   MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNS 56
           M  I+FD+E    +   +          II+IGA++L +   T  TF   + P      +
Sbjct: 1   MNYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSNLN 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P    L  +T + L     F  ++ +F +F N+    +       D+  +   +     D
Sbjct: 58  PFVKNLTNLTMDSLNKANPFREVYKDFLEFLNKNRNIFCIWGMT-DMKELFRNIVYYELD 116

Query: 117 PLDPSR---IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                +    +   +     +P S N  L++  + + IT  +   H A  D+   ++V+ 
Sbjct: 117 TESMPKEYINVQAYTGKYLNYPKSINVGLSNAVELFHIT-KNNDFHNAFNDAFYTAEVFK 175

Query: 173 KMMVGGSQINFGFKTNEDRFF--KEEKKTVPNISLLKR-DKPLFTRITKEELD 222
           K+     +      TN    +  K  K  +  +SL K+ +K   T++T +E D
Sbjct: 176 KIYSEKIKTKIYKPTNNSTTYRNKNTKTRIDTVSLFKQFEKMFNTKLTLQEQD 228


>gi|18310648|ref|NP_562582.1| hypothetical protein CPE1666 [Clostridium perfringens str. 13]
 gi|110800096|ref|YP_696353.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens ATCC 13124]
 gi|168211446|ref|ZP_02637071.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|168214501|ref|ZP_02640126.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens CPE str. F4969]
 gi|168216953|ref|ZP_02642578.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens NCTC 8239]
 gi|182626374|ref|ZP_02954128.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens D str. JGS1721]
 gi|18145329|dbj|BAB81372.1| hypothetical protein [Clostridium perfringens str. 13]
 gi|110674743|gb|ABG83730.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens ATCC 13124]
 gi|170710592|gb|EDT22774.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|170714024|gb|EDT26206.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens CPE str. F4969]
 gi|177908325|gb|EDT70873.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens D str. JGS1721]
 gi|182380871|gb|EDT78350.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens NCTC 8239]
          Length = 204

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 74/184 (40%), Gaps = 28/184 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ + FD ETTG+   +  I ++  + +   +K  +T    +     +  PEA ++HG +
Sbjct: 1   MKLLFFDTETTGVKPGS--ICQLSYILVDTSTKPQKTIGKNIFFTVDEMEPEAERIHGFS 58

Query: 67  DE---FLKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            E    L +   F  ++++F  DF        I HN +FD+ F+  EL  +  +  +P+ 
Sbjct: 59  LEKLYELSEGMYFEDLYADFINDFLEAD--FIIGHNVQFDIKFLKHELLGLG-EFFEPNN 115

Query: 123 IIDTLSI----ARRKHPSSRN---DLNSLCKRYGITISH------------RSKHGALLD 163
           +  T+       +   P+       L  + K   IT S              + H A  D
Sbjct: 116 VFCTMKYYKDICKILRPTGDYKNPKLEEVIKHLNITDSEISETANKYFQGSGNYHDARFD 175

Query: 164 SHLL 167
           +   
Sbjct: 176 TAAT 179


>gi|104780960|ref|YP_607458.1| exonuclease [Pseudomonas entomophila L48]
 gi|95109947|emb|CAK14652.1| putative exonuclease [Pseudomonas entomophila L48]
          Length = 183

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 12/173 (6%)

Query: 9   KIVFDIETT---GLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E T   G     +  IIEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLVIDLEATTDDGGWPVTEMEIIEIGASLVTREGREVDHFQRFVRPRRRPQLTPFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD--PL 118
            I+   + +   FS ++ +F  +     A    W++    +D   +  E Q  + D   L
Sbjct: 64  HISQADVDNATPFSEVWGQFERWLVNHQAQLQAWVSW-GDYDRKQLLQEWQVHHVDSLLL 122

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               I      A+ +H      LNS  +  G+  S +  H AL D+   + + 
Sbjct: 123 KLPHINLKQRFAKARHLQRPAGLNSALQLAGLQFSGQQ-HRALEDARNTARLL 174


>gi|226314204|ref|YP_002774100.1| hypothetical protein BBR47_46190 [Brevibacillus brevis NBRC 100599]
 gi|226097154|dbj|BAH45596.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 239

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 66/174 (37%), Gaps = 9/174 (5%)

Query: 7   MRKIVFDIETTGLDSKND---RIIEIGAVELLDY--SKTNRTFQVFLCPN-GRKNSPEAL 60
           M+ IVFD+ETT L  + D    IIEIGA +++         TFQ +  P   R+ S    
Sbjct: 1   MQIIVFDLETT-LTYQRDKIPEIIEIGAAKVVPGKNGVEVDTFQRYTFPAIERRISERTR 59

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K  G+  E +     F   F+EF  +    +  ++    + D   +     R   D    
Sbjct: 60  KFIGLDKENMPTFIPFRRAFAEFLKWIGNDSEYYLCTWGQDDKRLMIEHCARFGLDFNWM 119

Query: 121 SRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               D     +       +  L       GI    R  H AL+D+   + + IK
Sbjct: 120 RNYNDIQPPISLLLADRKQMSLKEAIDTAGIIQEGR-LHSALVDAIHTAHLLIK 172


>gi|168183921|ref|ZP_02618585.1| exonuclease family protein [Clostridium botulinum Bf]
 gi|237795808|ref|YP_002863360.1| exonuclease family protein [Clostridium botulinum Ba4 str. 657]
 gi|182672939|gb|EDT84900.1| exonuclease family protein [Clostridium botulinum Bf]
 gi|229261869|gb|ACQ52902.1| exonuclease family protein [Clostridium botulinum Ba4 str. 657]
          Length = 253

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 93/233 (39%), Gaps = 22/233 (9%)

Query: 7   MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNS 56
           M  I+FD+E    +   +          II+IGA++L +   T  TF   + P      +
Sbjct: 1   MNYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSDLN 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P    L  +T + L    +F  ++ +F  F N+            D+  +   +     D
Sbjct: 58  PFVKNLTNLTMDSLNKANTFREVYKDFLKFLNKDKNILCIWGMT-DMKELFRNIVYYELD 116

Query: 117 PLD-PSRIIDTLSIARRK--HPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               P   I+  +   +   +P S N  L++  + + IT  +   H A  D+   ++V+ 
Sbjct: 117 TESIPKEYINVQAYTGKYLNYPKSINVGLSNAVELFHIT-KNNDFHNAFNDAFYTAEVFK 175

Query: 173 KMMVGGSQINFGFKTNEDRFF--KEEKKTVPNISLLKR-DKPLFTRITKEELD 222
           K+     +      TN    +  K  K  +  +SL K+ +K   T++T +E D
Sbjct: 176 KIYSEKIKTKIYKPTNNSTTYRNKNTKTKIDTVSLFKQFEKMFNTKLTLQEQD 228


>gi|332076265|gb|EGI86731.1| exonuclease family protein [Streptococcus pneumoniae GA41301]
          Length = 196

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 60/179 (33%), Gaps = 15/179 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R      I FD+E    +       +I++ AV   D  + +  +  ++          
Sbjct: 1   MERLED--YIAFDLE---FNQHEGQTHLIQVSAVRFRDGREID-AYDSYVH-TSVPLKSF 53

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDP 117
              L GIT E LKD P    +  EF +F        I +NA   D+  +       N+  
Sbjct: 54  INGLTGITAETLKDAPPVEKVLEEFQEFVGS--LLMIGYNAAKSDLPILAEHGLDYNQQY 111

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                       +   H  +   L ++    G        H +L D+ + + VY   + 
Sbjct: 112 KVDLYDEAFERRSSDLHGIANLKLQTVASFLGF---QGQSHNSLEDARMTARVYESFLE 167


>gi|319441121|ref|ZP_07990277.1| DNA polymerase III subunit epsilon [Corynebacterium variabile DSM
           44702]
          Length = 228

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 15/153 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTG D    RI+    +  ++ S  +   ++   P G      A  +HGIT E+ +
Sbjct: 15  FDLETTGPDPLTARIVTSALIT-INGSHRDD-LEILADP-GIPIPEGATAVHGITTEYAR 71

Query: 72  DKP-SFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +       + +E  +       + A  I +NA +D+  +      +         + D L
Sbjct: 72  EHGRPHDEVLAETIERIRRGWSEGATLIIYNAAYDLTVLRT----LEPTFTVDGPVFDPL 127

Query: 128 --SIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
               A+ ++      L  +C+ YG+T+ +   H
Sbjct: 128 VVDKAKDRYRKGGRRLTQVCEHYGVTLDN--AH 158


>gi|312278915|gb|ADQ63572.1| DNA polymerase III epsilon subunit [Streptococcus thermophilus
           ND03]
          Length = 196

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 23/182 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            +N    I FD+E    ++ +    II++ AV++  + + ++ F  F+  +         
Sbjct: 1   MENLETYIAFDLE---FNTVDGVSHIIQVSAVKMGQHKEVDQ-FDSFVY-SNVPLQSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD 119
            L GIT + +   P   S+ +EF  F    N   I +NA K D+  +       N   L+
Sbjct: 56  GLTGITADKIAKAPKLESVLAEFKAFIG--NTPLIGYNALKSDLPILAE-----NGLNLE 108

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +D    A  +  S  N      L S+   +GI       H +L D+ + + +Y K 
Sbjct: 109 EQYALDVFDEAFDRRASDLNGIVNLKLTSVADFFGIK---GHGHNSLEDARMTAQIYEKF 165

Query: 175 MV 176
           + 
Sbjct: 166 LE 167


>gi|302877099|ref|YP_003845732.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|307687794|ref|ZP_07630240.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|302579956|gb|ADL53968.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
          Length = 255

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 80/234 (34%), Gaps = 25/234 (10%)

Query: 7   MRKIVFDIETTGLDSKN---------------DRIIEIGAVELLDYSKTNRTFQVFLCPN 51
           M  I++D+E    + +                  II+IGA++L +  +T   F   + P 
Sbjct: 1   MNYIIYDLE---FNQEYLHSSEVQSANNSSLPFEIIQIGALKLTENFETVANFNSLIKPT 57

Query: 52  GRKNS-PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
                 P    L  I D  +    +F  ++ +F +F               D+  +   +
Sbjct: 58  VYPIIHPYVESLTKINDSMVSSCETFPQVYEDFLEFIGNDETTLCVW-GISDIKELLRNI 116

Query: 111 QRINKDPLDPSR-IIDTLSIARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHL 166
           +  N      S+  ID    A +   +       L++      I  ++   H A  D++ 
Sbjct: 117 KFYNLPSSTISKNYIDIQKYASKHLRTPNKSRIGLSTAISLLNIP-TNGQFHDAFNDAYY 175

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
            ++V+  +     +          R  + ++K      + + +K     ++ EE
Sbjct: 176 TTEVFKHIYNNNIKTTTYIPNFSRRVKQSKEKIDTVALINQFEKMYNREMSLEE 229


>gi|126334116|ref|XP_001366655.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 696

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 67/198 (33%), Gaps = 31/198 (15%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           I+ D E+T    G    +  IIE    +      +    FQ ++ P      S   ++L 
Sbjct: 39  IIIDFESTCWNDGKHHYSQEIIEFPAVLLNTLTGEIESEFQTYVQPEEHPILSKFCIELT 98

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFD 102
           GI    + +        S+F  + +                      ++  ++   + +D
Sbjct: 99  GIKQAQVDEGVPLKICLSQFCKWIHLIQQQKKITFAPSITNNSASEVKSCAFVTW-SDWD 157

Query: 103 VGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
           +G       R    + P+  +  ID  +  +  +      L+   +  GI  S R  H  
Sbjct: 158 LGVCLEYECRRKQLRKPIFLNSWIDLRATYKLFYRRKPKGLSGALQELGIEFSGRE-HSG 216

Query: 161 LLDSHLLSDVYIKMMVGG 178
           L DS   + +  +M+  G
Sbjct: 217 LDDSRNTAHLAWRMIRDG 234


>gi|238060285|ref|ZP_04604994.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149]
 gi|237882096|gb|EEP70924.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149]
          Length = 303

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 16/160 (10%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + +  + FD+E T  +    RI+    V        + T + +L   G     +A   H
Sbjct: 78  WHDLPVVGFDLEGTLPEPMETRIVSAALVHS------DGTTREWLVDPGVPIPADATARH 131

Query: 64  GITDEFLK-----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           GITDE ++      + + + + +       +     +A  A +DV  ++ EL R     L
Sbjct: 132 GITDEMVRTGGRPARDALAELGTAIAKLIADS-TPLVAFCAPYDVTALHTELARHGLPAL 190

Query: 119 DPSR--IIDTLSIARRKHPS--SRNDLNSLCKRYGITISH 154
           D  R  +ID   + ++  P    R  L  LC+ Y +T+ +
Sbjct: 191 DWDRAVVIDPSVLHQQVEPRWYGRRQLGDLCRYYEVTLDN 230


>gi|312092765|ref|XP_003147452.1| exonuclease [Loa loa]
 gi|307757384|gb|EFO16618.1| exonuclease [Loa loa]
          Length = 401

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 22/221 (9%)

Query: 9   KIVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D E T    L   N  IIE    +  +   +    F  ++ P      S       
Sbjct: 150 FVVIDFECTCEADLYDYNHEIIEFPAILVDVRKKEIVDVFHSYVRPLANPQLSEFCSAFT 209

Query: 64  GITDEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDV-GFINAELQRINK 115
           GIT E +     F  +   F  +         E    ++  +  +D+  F   +  +   
Sbjct: 210 GITQEMVDKALPFIDVLDSFRAWMQLHHLGQKEVRYAFVT-DGPWDIAKFFQMQCIQSKL 268

Query: 116 DPLDPSRIIDT------LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           +P+               +   +KHP+ + +L+ +     +    R  H  L DS  ++ 
Sbjct: 269 NPIPHDFRFYVNVRRSFANKYCKKHPTQKINLSRMLTSLNMKFEGRE-HSGLDDSKNIAK 327

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
           + I+M+   S++    K    +   E+ K +P+++   RD+
Sbjct: 328 IVIRMLGDKSELRVNEKLVRIKDG-EKAKLLPDMNKEDRDR 367


>gi|159903267|ref|YP_001550611.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9211]
 gi|159888443|gb|ABX08657.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9211]
          Length = 245

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 66/169 (39%), Gaps = 18/169 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGLDS  D+ +EIGA+     +++      FL P    +   A  ++ I  E 
Sbjct: 24  LILDTETTGLDSDKDQCLEIGAILFHVKTRSVLAQNSFLLPVDENS---AESINRIPAEI 80

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIIDTL 127
            +    +      F +  +   A  +AHN  FD        Q     PL       I ++
Sbjct: 81  TRIFQPWEMGMKYFEELVDCAEAV-VAHNVAFDK-------QWFGSPPLPKLIKPWICSM 132

Query: 128 S---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                       SR  +  L   Y I +   S H AL D   L++V+ +
Sbjct: 133 EDISWPSHLQLRSRPSVRDLALAYEIPVW--SAHRALTDCIYLAEVFRR 179


>gi|322376854|ref|ZP_08051347.1| exonuclease [Streptococcus sp. M334]
 gi|321282661|gb|EFX59668.1| exonuclease [Streptococcus sp. M334]
          Length = 196

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 60/184 (32%), Gaps = 25/184 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R      I FD+E    +       +I++ AV   D  + +  +  ++          
Sbjct: 1   MERLED--YIAFDLE---FNQHEGQTHLIQVSAVRFRDGQEID-AYDSYVH-TSVPLKSF 53

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDP 117
              L GIT E LKD P    +  +F +F        + +NA   D+  +           
Sbjct: 54  INGLTGITAETLKDAPPVEKVIKDFQEFVGS--LPMVGYNAAKSDLPILADH-----GLD 106

Query: 118 LDPSRIIDTLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 +D    A        H  +   L ++    G        H +L D+ + + VY 
Sbjct: 107 YSQQYKVDLYDEAFERRSSDLHGIANLKLQTVASFLGF---QGQSHNSLEDARMTARVYE 163

Query: 173 KMMV 176
             + 
Sbjct: 164 SFLE 167


>gi|282859255|ref|ZP_06268375.1| exonuclease [Prevotella bivia JCVIHMP010]
 gi|282587961|gb|EFB93146.1| exonuclease [Prevotella bivia JCVIHMP010]
          Length = 297

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 11/171 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALK--LH 63
           M  +  D E   L+++   + E+G V+ +D  + + TF   + P+ G +      +  L 
Sbjct: 1   MEFVTIDFE--KLNNEQTSVCEVGMVKYIDQKEVD-TFYTTIYPSTGIRVQKGFCEGILK 57

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            IT E L++ P F  ++ E  DF    +A  + H+   D+ +I    +      L  +  
Sbjct: 58  RITFEKLENSPKFPKVYEEMKDFIG--DAIIVCHSKGADLNYIYNCEKEFGLTGLYHNGY 115

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           IDT  + +         L  L K           H AL D+     + + +
Sbjct: 116 IDTEEVGKSIKKVG--SLPDLYKAL-FHKQLEEHHEALHDALACGKILLSL 163


>gi|118602911|ref|YP_904126.1| exodeoxyribonuclease I subunit C [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
 gi|118567850|gb|ABL02655.1| Exodeoxyribonuclease I subunit C [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 471

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 66/194 (34%), Gaps = 27/194 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFLK 71
           D ET G+  K DRI +   +   +          +  P N    SPEA  + GI+ +  +
Sbjct: 8   DYETFGISPKIDRISQFAGIRTDENFNIIDEQMFYCKPTNDCLPSPEACFITGISPQLCE 67

Query: 72  DKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI-----I 124
            K         +    F+  N   + +N+ +FD  F    L R   DP            
Sbjct: 68  QKGMIEHEFIKKIHAQFSTSNTCIVGYNSIRFDDEFTRHTLYRNFIDPYTWHWQNGNTRW 127

Query: 125 DTLSIARRKHPSSR---------------NDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           D L++ R  +   +                 L+ L       I H + H AL D H    
Sbjct: 128 DILNVVRLCYALKKDTSLKWVYDKQGNPVFKLDQLS--LANDIEHANAHDALADVHAT-- 183

Query: 170 VYIKMMVGGSQINF 183
           + I  ++  +Q   
Sbjct: 184 IAIAKIIKQTQPQL 197


>gi|295108760|emb|CBL22713.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Ruminococcus obeum A2-162]
          Length = 319

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 16/181 (8%)

Query: 7   MRKIVFDIE---TTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  IVFD+E   + G    ++      IIEIGAV++ +  +    FQ  + P       +
Sbjct: 1   MNYIVFDLEWNQSPGGKKYSNSRLPFEIIEIGAVKMNEQREVLDVFQRLVKPQVYNWIHD 60

Query: 59  AL-KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--K 115
           ++ ++  +  + L D   F     EF D+  E+   +       DV  +   ++     K
Sbjct: 61  SIHEVIHVDYKDLADGVPFPQAVEEFLDWCGEER-VFCTW-GNQDVMELQRNMKYYGLLK 118

Query: 116 DPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               P    D   I    +     R  L     +  +  +    H AL D+    +++ +
Sbjct: 119 KIKGPVTYYDAQKIYGICYKEDPCRRSLEYAIDKMRLPKAQE-FHRALTDAKYTGEIFKR 177

Query: 174 M 174
           +
Sbjct: 178 L 178


>gi|188581967|ref|YP_001925412.1| exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
 gi|179345465|gb|ACB80877.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
          Length = 187

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 24/182 (13%)

Query: 12  FDIETTGL--------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           FD+ET+GL        D    R++++G        +   ++   + P+G + +PEA ++H
Sbjct: 5   FDVETSGLIIRDRPLDDPAQPRMVQLGFTVHTPDRRVVHSYSALIRPDGWEITPEAQRVH 64

Query: 64  GITDEF-----LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           G + E      +  K +   + S       +     +AHN   D      EL  +     
Sbjct: 65  GFSTEDCGRWGVDSKVALLDLVSAL-----KTARIAVAHNFANDAAIAQRELNILKAADE 119

Query: 119 DPS----RIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                  R + T+   A          L  L K       H   H AL D+   +  +  
Sbjct: 120 GFMRARLRRVCTMRTGAALVQDGKWPTLGRLHKLLAGH-EHEGAHDALGDAQATARCFWG 178

Query: 174 MM 175
           ++
Sbjct: 179 LV 180


>gi|323700913|gb|ADY00066.1| hypothetical protein [Escherichia coli]
          Length = 282

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 56/175 (32%), Gaps = 29/175 (16%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL       +EIG  +          F+  L P       +A  +HGI + 
Sbjct: 104 PLFLDTETTGL-GNTAEALEIGLTDAAGRVI----FETRLKPTVA-IEAQAAAVHGIDEP 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            L   PS+  +  +      ++    I  NA FD   +           D L    +   
Sbjct: 158 ALSGAPSWPDVALQLRHAIGDR--PVIIFNAPFDTRILKQTAAAHGDPADWLGELTVYCA 215

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITIS-----------HRSKHGALLDSHLLSDV 170
           + +A     ++         RYG                   H A+ D+ + + V
Sbjct: 216 MELAAGYFGATN--------RYGTISLASAASQAALAWEGEAHSAIADARMTAGV 262


>gi|324327435|gb|ADY22695.1| exonuclease [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 281

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 15/181 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR----IIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSP 57
            +N    IVFDIE              I++IGAV++     K    F   + P G + + 
Sbjct: 1   MENATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEASTMKVIGEFSELVKP-GARLTR 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              KL GIT + L     F  I  +F  F   +++ ++    + D  F++ +    + + 
Sbjct: 59  HTTKLTGITKKDLIGVEQFPQIIEKFIQFIG-EDSIFVTWGKE-DYRFLSHDCTLHSVEC 116

Query: 118 LDPS--RIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 R ID    +  A  +       L S  ++ G+    +  H AL D+   +++ +
Sbjct: 117 PCMQKERRIDLQKFVFQAYEELFEHTPSLQSAVEQLGLIWEGKQ-HRALADAENTANILL 175

Query: 173 K 173
           K
Sbjct: 176 K 176


>gi|55821577|ref|YP_140019.1| DNA polymerase III subunit epsilon [Streptococcus thermophilus LMG
           18311]
 gi|55737562|gb|AAV61204.1| DNA polymerase III epsilon subunit [Streptococcus thermophilus LMG
           18311]
          Length = 196

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 23/182 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            +N    I FD+E    ++ +    II++ AV++  + + ++ F  F+  +         
Sbjct: 1   MENLETYIAFDLE---FNTVDGVSHIIQVSAVKMGQHKEVDQ-FDSFVY-SNVPLQSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD 119
            L GIT + +   P   S+ +EF  F    N   I +NA K D+  +       N   L+
Sbjct: 56  GLTGITADKIAKAPKLESVLAEFKAFIG--NTPLIGYNALKSDLPILAE-----NGLNLE 108

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +D    A  +  S  N      L S+   +GI       H +L D+ + + +Y K 
Sbjct: 109 EQYALDVFDEAFDRRASDLNGIVNLKLTSVADFFGIK---GHGHNSLEDARMTAQIYKKF 165

Query: 175 MV 176
           + 
Sbjct: 166 LE 167


>gi|228969485|ref|ZP_04130297.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228790228|gb|EEM37998.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 206

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 63/155 (40%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV+  +   K    F   + P+ R  +    KL GIT E L        I  +F
Sbjct: 18  EIVDIGAVKIKIGTMKIIEEFSELVKPSAR-LTRHTTKLTGITKEDLIGVEKSPQIVEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIIDT---LSIARRKHPSSR 138
             F   ++  +++   + D  F++ +      +   ++    ID    +  A  +     
Sbjct: 77  IQFIG-EDCIFVSWGKE-DYRFLSHDCALHGVECTSIEKENRIDLQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L    ++ G+T   +  H AL D+   +++ +K
Sbjct: 135 PSLQFAVEQLGLTWEGKQ-HRALADAENTANILLK 168


>gi|238927543|ref|ZP_04659303.1| possible exonuclease [Selenomonas flueggei ATCC 43531]
 gi|238884825|gb|EEQ48463.1| possible exonuclease [Selenomonas flueggei ATCC 43531]
          Length = 219

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 30/188 (15%)

Query: 7   MRKIVFDIETTGLDSK-----------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M+ IV D+E   ++             N  IIEIGAV L +       FQ ++CP     
Sbjct: 1   MKHIVVDLE---MNPVGKEYRDVRRKLNGEIIEIGAVRLNEDFVQEDEFQCYVCPEYGMV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
                +L GIT E +   P+F+  F  F  +  E   +  + +   D+  +  E  R+  
Sbjct: 58  KKHITELTGITQEKVAGHPAFADSFHAFVAWIGEAETKIYSWSMS-DIKQLRKEC-RLKL 115

Query: 116 DPLD----PSRIIDTLSIARRKHPSS-----RNDLNSLCKRYGITISHRSKHGALLDSHL 166
              D     +R +D       +         ++ L ++ +R+       S+H AL D+  
Sbjct: 116 PDFDVTWLDTRWVDLQQEFDDRLGLHNSLALKHALGAMGRRF-----EGSQHSALADAVN 170

Query: 167 LSDVYIKM 174
            S V   M
Sbjct: 171 TSAVLALM 178


>gi|83591972|ref|YP_425724.1| DNA polymerase III subunit epsilon [Rhodospirillum rubrum ATCC
           11170]
 gi|83574886|gb|ABC21437.1| Exonuclease [Rhodospirillum rubrum ATCC 11170]
          Length = 209

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 10/172 (5%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGLD  ND II + AV +  +   T++   + + P+ R    +A+ +H + ++
Sbjct: 32  VSVDCETTGLDRHNDDIITLAAVRVRGNRVLTSQKLDLVVKPS-RPIRRDAVCIHHLREQ 90

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR------ 122
            ++   +     + F  F   +    I +  +FDV  I+  ++      L   R      
Sbjct: 91  DVERGLAPREAVARFLRFAGSR--PLIGYYLEFDVALIDRLVRPWLGIGLPNPRIEVSEM 148

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             D  +  R +  +   DL        + I     H A  D+ + S  Y+K+
Sbjct: 149 FYDWRTRGREELYTGTVDLRFATILEALDIPPLHNHDAFEDAVMTSLAYLKL 200


>gi|330983976|gb|EGH82079.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 551

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 66/191 (34%), Gaps = 32/191 (16%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAV------ELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            R  VFD ETTGL + +D+I++   V       ++   +      V + P+    SP A 
Sbjct: 6   QRLCVFDTETTGLSAHHDQIVQFAGVGLDPELNIIPGDEIV--LDVLMRPDVVP-SPGAF 62

Query: 61  KLHGITDEFL-KDKPSFSSIFSEFWD-FFNEQNAEWIAHN-AKFDVGFINAELQRINKDP 117
            + GI+   L +             + F  ++      +N  +FD   I     R   DP
Sbjct: 63  AVTGISISHLMQHGIPEFEAAGHIRNWFMRQEGTNITGYNTQRFDDEVIRNTFYRNMIDP 122

Query: 118 LDPSR----------IIDTLSIA------RRKHPSSRND--LNSLCKRYGITISHRSKHG 159
                           + T+  A      R      R    L  +C+  GI++ +   H 
Sbjct: 123 YQHEWDKGNSRSDILRLVTMVFALRPEMLRWPLKDGRYSMKLGEMCRENGISLDN--AHD 180

Query: 160 ALLDSHLLSDV 170
           A  D     ++
Sbjct: 181 ARFDVMATIEL 191


>gi|254744865|ref|ZP_05202543.1| exonuclease [Bacillus anthracis str. Kruger B]
          Length = 281

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 15/181 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR----IIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSP 57
            +N    IVFDIE              I++IGAV++     K    F   + P G + + 
Sbjct: 1   MENATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEASTMKVIGEFSELVKP-GARLTR 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              KL GIT + L     F  I  +F  F   +++ ++    + D  F++ +    + + 
Sbjct: 59  HTTKLTGITKKDLIGVEKFPQIIEKFIRFIG-EDSIFVTWGKE-DYRFLSHDCTLHSVEC 116

Query: 118 LDP--SRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 R ID    +  A  +       L S  ++ G+    +  H AL D+   +++ +
Sbjct: 117 PCMEKERRIDLQKFVFQAYEELFEHTPSLQSAVEQLGLIWEGKQ-HRALADAENTANILL 175

Query: 173 K 173
           K
Sbjct: 176 K 176


>gi|110803621|ref|YP_698953.1| DNA polymerase III, epsilon subunit [Clostridium perfringens SM101]
 gi|110684122|gb|ABG87492.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens SM101]
          Length = 204

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 74/184 (40%), Gaps = 28/184 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ + FD ETTG+   +  I ++  + +   +K  +T    +     +  PEA ++HG +
Sbjct: 1   MKLLFFDTETTGVKPGS--ICQLSYILVNTSTKPQKTIGKNIFFTVDEMEPEAERIHGFS 58

Query: 67  DE---FLKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            E    L +   F  ++++F  DF        I HN +FD+ F+  EL  +  +  +P+ 
Sbjct: 59  LEKLYELSEGMYFEDLYADFINDFLEAD--FIIGHNVQFDIKFLKHELLGLG-EFFEPNN 115

Query: 123 IIDTLSI----ARRKHPSSRN---DLNSLCKRYGITISH------------RSKHGALLD 163
           +  T+       +   P+       L  + K   IT S              + H A  D
Sbjct: 116 VFCTMKYYKDICKILRPTGDYKNPKLEEVIKHLNITDSEISETANKYFQGSGNYHDARFD 175

Query: 164 SHLL 167
           +   
Sbjct: 176 TAAT 179


>gi|293365308|ref|ZP_06612025.1| exonuclease [Streptococcus oralis ATCC 35037]
 gi|307703848|ref|ZP_07640789.1| DNA polymerase III, epsilon chain [Streptococcus oralis ATCC 35037]
 gi|291316758|gb|EFE57194.1| exonuclease [Streptococcus oralis ATCC 35037]
 gi|307622683|gb|EFO01679.1| DNA polymerase III, epsilon chain [Streptococcus oralis ATCC 35037]
          Length = 197

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 66/182 (36%), Gaps = 24/182 (13%)

Query: 4   KNKMR-KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             K+R  I FD+E    +  +    +I++ AV   D  + +  F  ++            
Sbjct: 1   MEKLRDYIAFDLE---FNQHDGLTHLIQVSAVRFQDGKE-SAAFDSYVH-TTVPLKSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT E LKD P    +  +F  F    +   + +NA   D+  +         D  D
Sbjct: 56  GLTGITAETLKDAPKVEQVLKDFQAFVG--DLPIVGYNAAKSDLPILLEH----GIDYRD 109

Query: 120 PSRIIDTLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + +D    A        H  +   L ++    G    H   H +L D+ + + VY   
Sbjct: 110 QYK-VDLYDEAFERRSSDLHGIANLKLQTVANFLGF---HGKSHNSLEDARMTARVYEAF 165

Query: 175 MV 176
           + 
Sbjct: 166 LE 167


>gi|308235255|ref|ZP_07665992.1| exonuclease [Gardnerella vaginalis ATCC 14018]
 gi|311115068|ref|YP_003986289.1| hypothetical protein HMPREF0421_21184 [Gardnerella vaginalis ATCC
           14019]
 gi|310946562|gb|ADP39266.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019]
          Length = 256

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 17/175 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG     D I     V     +KT N     +L    +  +P+A +++G TDEFL
Sbjct: 32  FDTETTGAILGEDSICSATLVLRNPQNKTHNDVIATWLINPHKPINPKASQVNGFTDEFL 91

Query: 71  KD---KPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--- 123
           ++   +P+      +        +N   +A+NA FDV  +  +L++ +   L+       
Sbjct: 92  QENGGEPTAEIEALAAAVSLAQSKNIPLLAYNAPFDVEMLRHDLKKWDLTSLNNRPNSTI 151

Query: 124 -------IDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                  +D L I R     + +  L    + YG+       H A  D+    D+
Sbjct: 152 NDGEILVVDPLVIDRAVSKRTGKRTLTHTTQFYGVE-PIGDFHDATADTVAAVDL 205


>gi|89094457|ref|ZP_01167397.1| DNA polymerase III subunit epsilon [Oceanospirillum sp. MED92]
 gi|89081349|gb|EAR60581.1| DNA polymerase III subunit epsilon [Oceanospirillum sp. MED92]
          Length = 209

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 75/181 (41%), Gaps = 11/181 (6%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61
           + +    +  D ETT LD K   I+ IGAV++       +    + L P  +  + +++K
Sbjct: 27  KYDGDEVVSLDCETTSLDVKQGEIVSIGAVKIKGRKVLSSDRLDIKLKPP-KSLTGDSIK 85

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDP 120
           +H I +  L           +  +F   +    + +   +D+  ++  ++ +      + 
Sbjct: 86  IHKIRESDLAGGIDIEDALEQVLEFVGNR--PILGYYVNYDIRMLDKFIRPQFGFGLPNK 143

Query: 121 SRIIDTLSIARRKHP--SSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +  +  +     K        DL  +++ K+  I +  R  H A+ D+  ++ +Y+++  
Sbjct: 144 AIELSHVYHDIIKWKSVGGNVDLRFDTISKQLDIPMLER--HTAIGDALTVALMYVRLKY 201

Query: 177 G 177
           G
Sbjct: 202 G 202


>gi|309799451|ref|ZP_07693685.1| ATP-dependent DNA helicase [Streptococcus infantis SK1302]
 gi|308116912|gb|EFO54354.1| ATP-dependent DNA helicase [Streptococcus infantis SK1302]
          Length = 346

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 90  QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRY 148
           ++  ++AHN +FD   +   L     +   P   IDT+ +A+  +P   + +L  LC+  
Sbjct: 3   KDGVFVAHNVQFDANLLAEFLFFEGYELRTP--RIDTVELAQVFYPQLEKYNLGILCQEL 60

Query: 149 GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           GI++     H AL D+   +++++ M     Q+  G 
Sbjct: 61  GISLE--KAHTALSDAQATAELFLCMRQKMFQLPKGL 95


>gi|187779653|ref|ZP_02996126.1| hypothetical protein CLOSPO_03249 [Clostridium sporogenes ATCC
           15579]
 gi|187773278|gb|EDU37080.1| hypothetical protein CLOSPO_03249 [Clostridium sporogenes ATCC
           15579]
          Length = 195

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 66/192 (34%), Gaps = 29/192 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHG 64
           M+KI  D ETTGL+     II++   V  ++     R +F      +       A  +HG
Sbjct: 1   MKKIFIDTETTGLEP--GEIIQLTYCVCDINSKGEERVSFSKNFFFDVDYIEESAEAIHG 58

Query: 65  ITDEFLK---DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            + E LK   +   F  + SE     + ++  +IAHN  FD  F+ AE  R++     P 
Sbjct: 59  FSVEKLKILSNGKKFKDLASEISS--DLKDGIFIAHNVNFDRKFVTAEFNRLDDINWIPK 116

Query: 122 RIIDTLSIAR-------RKHPSSRNDLNSLCKRYGITI-------------SHRSKHGAL 161
               T+   +       R     +  L        I                    H A 
Sbjct: 117 EFFCTMEYFKPIVKATTRTGKLKKPRLEETVDFLNIDKKVVVKGAKKLFNCDDVGFHDAR 176

Query: 162 LDSHLLSDVYIK 173
            D   L   Y +
Sbjct: 177 YDVAALVSCYYR 188


>gi|170758360|ref|YP_001787672.1| putative exonuclease [Clostridium botulinum A3 str. Loch Maree]
 gi|169405349|gb|ACA53760.1| putative exonuclease [Clostridium botulinum A3 str. Loch Maree]
          Length = 200

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 22/196 (11%)

Query: 7   MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNS 56
           M  I+FD+E    +   +          II+IGA++L +   T  TF   + P      +
Sbjct: 1   MNYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALIKPEIYSNLN 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           P    L  +T + L     F  ++ +F +F N+            D+  +   +     D
Sbjct: 58  PFVKNLTNLTMDSLNKANPFREVYKDFLEFLNKDKNILCIWGMT-DMKELFRNIVYYELD 116

Query: 117 PLDPSR---IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                +    +   +     +P S N  L++  + + IT  +   H A  D+   ++V+ 
Sbjct: 117 TESMPKEYINVQAYTGKYLNYPKSINVGLSNAVELFHIT-KNNDFHNAFNDAFYTAEVFK 175

Query: 173 K---MMVGGSQINFGF 185
           K        SQ+ +  
Sbjct: 176 KVYLFYRLQSQLPYSL 191


>gi|148546859|ref|YP_001266961.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas putida F1]
 gi|148510917|gb|ABQ77777.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas putida F1]
          Length = 183

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 12/173 (6%)

Query: 9   KIVFDIETT---GLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E T   G     +  IIEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLVIDLEATTDDGGWPVTEMEIIEIGASLVTREGREVDHFQRFVKPRRRPQLTPFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            I+   + +   F  +++ F  +      Q   W++    +D   ++ E Q+   D L  
Sbjct: 64  HISQADVDNAAPFREVWASFERWLGHHRGQLQAWVSW-GDYDRQQLHQEWQQHGLDSLLR 122

Query: 121 SRIIDTL--SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +     L    A+ +H      LN   +  G+    +  H AL D+   + + 
Sbjct: 123 TLPHINLKQRFAKARHLQRPTGLNGALQLAGMHFCGQQ-HRALEDARNTARLL 174


>gi|118478787|ref|YP_895938.1| exonuclease [Bacillus thuringiensis str. Al Hakam]
 gi|196042618|ref|ZP_03109857.1| exonuclease family protein [Bacillus cereus 03BB108]
 gi|229185755|ref|ZP_04312932.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus BGSC
           6E1]
 gi|118418012|gb|ABK86431.1| exonuclease family protein [Bacillus thuringiensis str. Al Hakam]
 gi|196026102|gb|EDX64770.1| exonuclease family protein [Bacillus cereus 03BB108]
 gi|228597727|gb|EEK55370.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus BGSC
           6E1]
          Length = 281

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 15/181 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR----IIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSP 57
            +N    IVFDIE              I++IGAV++     K    F   + P G + + 
Sbjct: 1   MENATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEASTMKVIGEFSELVKP-GARLTR 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              KL GIT + L     F  I  +F  F   +++ ++    + D  F++ +    + + 
Sbjct: 59  HTTKLTGITKKDLIGVEKFPQIIEKFIRFIG-EDSIFVTWGKE-DYRFLSHDCTLHSVEC 116

Query: 118 LDP--SRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 R ID    +  A  +       L S  ++ G+    +  H AL D+   +++ +
Sbjct: 117 PCMEKERRIDLQKFVFQAYEELFEHTPSLQSAVEQLGLIWEGKQ-HRALADAENTANILL 175

Query: 173 K 173
           K
Sbjct: 176 K 176


>gi|255547337|ref|XP_002514726.1| exonuclease, putative [Ricinus communis]
 gi|223546330|gb|EEF47832.1| exonuclease, putative [Ricinus communis]
          Length = 448

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 15/172 (8%)

Query: 9   KIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKL--- 62
              FD+ETT  G + +   I+E GA+ +   +     T+  F+ P    +   +      
Sbjct: 14  IAFFDLETTLPG-ECEGFAILEFGAILVCPRTLVELHTYATFVQPAADPSLIFSSSFLRS 72

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
           +GIT + +   P+FS I    ++  N +   W  HN  KFD   I      I + P  P 
Sbjct: 73  NGITYDNIVSAPTFSDIADTVYEILNGR--LWAGHNVQKFDSVKIREAFAEIGRQPPVPK 130

Query: 122 RIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDT  +   K    +    + SL   +G+    +  H +L D  +  DV 
Sbjct: 131 GVIDTWELLTHKFGRRAGDMKMASLATYFGL---GKQTHRSLDDVRMNVDVL 179


>gi|49186337|ref|YP_029589.1| exonuclease [Bacillus anthracis str. Sterne]
 gi|167637136|ref|ZP_02395416.1| exonuclease family protein [Bacillus anthracis str. A0193]
 gi|190564581|ref|ZP_03017502.1| exonuclease family protein [Bacillus anthracis Tsiankovskii-I]
 gi|227813635|ref|YP_002813644.1| exonuclease family protein [Bacillus anthracis str. CDC 684]
 gi|229601907|ref|YP_002867732.1| exonuclease family protein [Bacillus anthracis str. A0248]
 gi|254686103|ref|ZP_05149962.1| exonuclease [Bacillus anthracis str. CNEVA-9066]
 gi|254723504|ref|ZP_05185292.1| exonuclease [Bacillus anthracis str. A1055]
 gi|254738576|ref|ZP_05196279.1| exonuclease [Bacillus anthracis str. Western North America USA6153]
 gi|254752894|ref|ZP_05204930.1| exonuclease [Bacillus anthracis str. Vollum]
 gi|254759166|ref|ZP_05211192.1| exonuclease [Bacillus anthracis str. Australia 94]
 gi|49180264|gb|AAT55640.1| exonuclease family protein [Bacillus anthracis str. Sterne]
 gi|167514643|gb|EDR90009.1| exonuclease family protein [Bacillus anthracis str. A0193]
 gi|190563898|gb|EDV17862.1| exonuclease family protein [Bacillus anthracis Tsiankovskii-I]
 gi|227004277|gb|ACP14020.1| exonuclease family protein [Bacillus anthracis str. CDC 684]
 gi|229266315|gb|ACQ47952.1| exonuclease family protein [Bacillus anthracis str. A0248]
          Length = 281

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 15/181 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR----IIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSP 57
            +N    IVFDIE              I++IGAV++     K    F   + P G + + 
Sbjct: 1   MENATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEASTMKVIGEFSELVKP-GARLTR 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              KL GIT + L     F  I  +F  F   +++ ++    + D  F++ +    + + 
Sbjct: 59  HTTKLTGITKKDLIGVEKFPQIIEKFIRFIG-EDSIFVTWGKE-DYRFLSHDCTLHSVEC 116

Query: 118 LDP--SRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 R ID    +  A  +       L S  ++ G+    +  H AL D+   +++ +
Sbjct: 117 PCMEKERRIDLQKFVFQAYEELFEHTPSLQSAVEQLGLIWEGKQ-HRALADAENTANILL 175

Query: 173 K 173
           K
Sbjct: 176 K 176


>gi|228928575|ref|ZP_04091612.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228831087|gb|EEM76687.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 281

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 15/181 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR----IIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSP 57
            +N    IVFDIE              I++IGAV++     K    F   + P G + + 
Sbjct: 1   MENATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEASTMKVIGEFSELVKP-GARLTR 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              KL GIT + L     F  I  +F  F   +++ ++    + D  F++ +    + + 
Sbjct: 59  HTTKLTGITKKDLIGVEKFPQIIEKFIRFIG-EDSIFVTWGKE-DYRFLSHDCTLHSVEC 116

Query: 118 LDP--SRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 R ID    +  A  +       L S  ++ G+    +  H AL D+   +++ +
Sbjct: 117 PCMEKERRIDLQKFVFQAYEELFEHTPSLQSAVEQLGLIWEGKQ-HRALADAENTANILL 175

Query: 173 K 173
           K
Sbjct: 176 K 176


>gi|49481766|ref|YP_037618.1| exonuclease [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|52141997|ref|YP_084833.1| exonuclease [Bacillus cereus E33L]
 gi|196038482|ref|ZP_03105791.1| exonuclease family protein [Bacillus cereus NVH0597-99]
 gi|49333322|gb|AAT63968.1| exonuclease family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51975466|gb|AAU17016.1| exonuclease family protein [Bacillus cereus E33L]
 gi|196030890|gb|EDX69488.1| exonuclease family protein [Bacillus cereus NVH0597-99]
          Length = 281

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 15/181 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR----IIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSP 57
            +N    IVFDIE              I++IGAV++     K    F   + P G + + 
Sbjct: 1   MENATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEASTMKVIGEFSELVKP-GARLTR 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              KL GIT + L     F  I  +F  F   +++ ++    + D  F++ +    + + 
Sbjct: 59  HTTKLTGITKKDLIGVEKFPQIIEKFIRFIG-EDSIFVTWGKE-DYRFLSHDCTLHSVEC 116

Query: 118 LDP--SRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 R ID    +  A  +       L S  ++ G+    +  H AL D+   +++ +
Sbjct: 117 PCMEKERRIDLQKFVFQAYEELFEHTPSLQSAVEQLGLIWEGKQ-HRALADAENTANILL 175

Query: 173 K 173
           K
Sbjct: 176 K 176


>gi|124007771|ref|ZP_01692473.1| 3'-5' exonuclease eri-1 [Microscilla marina ATCC 23134]
 gi|123986717|gb|EAY26498.1| 3'-5' exonuclease eri-1 [Microscilla marina ATCC 23134]
          Length = 185

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 72/179 (40%), Gaps = 19/179 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRI---IEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKL 62
           M  ++ D+E T  +++ +R    IEIGAV + +  K    F  F+ P      S    +L
Sbjct: 1   MVYVIVDLEATCWETRENRANETIEIGAVCIGNEGKWVDEFDTFVKPVTHPVLSEFCTQL 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFF----NEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             IT E + D P F     +F  +     N       +    +D      +    N    
Sbjct: 61  TSITQEMVDDAPLFPEALDDFQQWINNCANGDQYVLCSW-GYYDRVQFKNDCLLHNL--- 116

Query: 119 DPSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P++ + +    + ++   +N      +    ++ G+ +S  + H  + D+  ++D+++
Sbjct: 117 -PTQWLASHISLKHQYADIKNMRRPIGMKKALQKEGLFLSG-THHRGIDDAKNIADIFL 173


>gi|167469388|ref|ZP_02334092.1| ribonuclease T [Yersinia pestis FV-1]
          Length = 108

 Score = 80.3 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 4/98 (4%)

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSL 144
                A  +AHNA FD  F+ A  +R  + ++P  P    DT +++       +  L   
Sbjct: 3   VGCNRAIIVAHNANFDHSFVMAAAERASLKRNPFHPFATFDTAALSGLVL--GQTVLAKA 60

Query: 145 CKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           C   GI       H AL D+   + ++ +++    ++ 
Sbjct: 61  CLAAGIPFDSSQAHSALYDTLQTAKLFCELVNRWKKLG 98


>gi|299142339|ref|ZP_07035471.1| ATP-dependent DNA helicase [Prevotella oris C735]
 gi|298576061|gb|EFI47935.1| ATP-dependent DNA helicase [Prevotella oris C735]
          Length = 906

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 88/222 (39%), Gaps = 25/222 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG-ITDE 68
           +FD ETTGLD  +D I++I AV++ + +        + L     ++  E  ++ G I + 
Sbjct: 509 IFDTETTGLDVFHDDILQIAAVKVRNGAVVPGSALSLHL-----ESDHEIPEMLGDIVNP 563

Query: 69  FLKDKP-----SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR- 122
            ++++              F D+   +    + HNA +D+  +   LQR   +   P+  
Sbjct: 564 IIEERRNQTLLPRREALQRFVDY--ARGTVLLGHNADYDIHILANNLQREMPETALPNEL 621

Query: 123 --IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               D+L + R   P  R   L  L +   + +   + H A  D +    + +       
Sbjct: 622 SDYFDSLHLIRLLRPGLRQYKLKYLLEV--LHLEGENSHLADADVNATQSLVVFCYDKAK 679

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           +I       E + F   K+    I  L+ +     R T E+L
Sbjct: 680 EI-----VGEQQAFIRHKRVQERIMTLRNNYLPHYRHTVEQL 716


>gi|218904663|ref|YP_002452497.1| exonuclease family protein [Bacillus cereus AH820]
 gi|218535470|gb|ACK87868.1| exonuclease family protein [Bacillus cereus AH820]
          Length = 281

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 15/181 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR----IIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSP 57
            +N    IVFDIE              I++IGAV++     K    F   + P G + + 
Sbjct: 1   MENATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEASTMKVIGEFSELVKP-GARLTR 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              KL GIT + L     F  I  +F  F   +++ ++    + D  F++ +    + + 
Sbjct: 59  HTTKLTGITKKDLIGVEKFPQIIEKFIRFIG-EDSIFVTWGKE-DYRFLSHDCTLHSVEC 116

Query: 118 LDP--SRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 R ID    +  A  +       L S  ++ G+    +  H AL D+   +++ +
Sbjct: 117 PCMEKERRIDLQKFVFQAYEELFEHTPSLQSAVEQLGLIWEGKQ-HRALADAENTANILL 175

Query: 173 K 173
           K
Sbjct: 176 K 176


>gi|296119553|ref|ZP_06838111.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967436|gb|EFG80703.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 223

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 15/163 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +  + + FD+ETT ++++  RI+   AV  +      +  +    P G +    A K
Sbjct: 1   MNFDASKMLSFDLETTSVNTREARIVT-SAVLRIAGPDVVKK-ETLADP-GVEIPEAAAK 57

Query: 62  LHGITDEFLK-DKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HGIT E  + +      +  E  +      ++    I +NA +D+  +    + +  D 
Sbjct: 58  IHGITTEQARAEGRPHDEVLQETVNAIKAAWDEGFTLIVYNAPYDLSVL----RNLTGDF 113

Query: 118 LDPSRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKH 158
                + D   I R   ++   +  L  LCK Y + + +   H
Sbjct: 114 TVTGPVFDPYLIDRVKDRYRKGKRTLGDLCKEYRVELGN--AH 154


>gi|269102608|ref|ZP_06155305.1| exodeoxyribonuclease I [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162506|gb|EEZ41002.1| exodeoxyribonuclease I [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 473

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 66/193 (34%), Gaps = 25/193 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPE 58
           MI+KN+      D ET G     DR  +   +   +D +       ++   P+    SPE
Sbjct: 1   MIKKNEPSLYWIDYETFGASPATDRPCQFAGIRTDMDLNIIGEPLVIYCKPPHDYLPSPE 60

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +   +K  S     +   +  ++ N   + +N  +FD       L R   D
Sbjct: 61  ACLITGITPQEANEKGLSEPEFIARIHEELSKPNTCVVGYNNVRFDDEVTRYTLYRNFYD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L    GI   H + 
Sbjct: 121 PYGWSWQQGNSRWDLLDIMRTCYALRPDGINWPTDDEGLPSFKLEKLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDV 170
           H A+ D +   ++
Sbjct: 179 HDAMADVYATIEM 191


>gi|194397817|ref|YP_002037629.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae G54]
 gi|225861122|ref|YP_002742631.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298231026|ref|ZP_06964707.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298253983|ref|ZP_06977569.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502997|ref|YP_003724937.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           TCH8431/19A]
 gi|194357484|gb|ACF55932.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae G54]
 gi|225727595|gb|ACO23446.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238592|gb|ADI69723.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389271|gb|EGE87616.1| exonuclease family protein [Streptococcus pneumoniae GA04375]
          Length = 196

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 61/184 (33%), Gaps = 25/184 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R      I FD+E    +       +I++ AV   D  + +  +  ++          
Sbjct: 1   MERLED--YIAFDLE---FNQHEGQKHLIQVSAVRFRDGREID-AYDSYVH-TSVPLKSF 53

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDP 117
              L GIT E LKD P    +  EF +F        I +NA   D+  +         D 
Sbjct: 54  INGLTGITAETLKDAPPVEKVLEEFQEFVGS--LLMIGYNAAKSDLPILAE----YGLDY 107

Query: 118 LDPSRIIDTLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 +D    A        H  +   L ++    G        H +L D+ + + VY 
Sbjct: 108 -SQQYKVDLYDEAFERRSSDLHGIANLKLQTVASFLGF---QGQSHNSLEDARMTARVYE 163

Query: 173 KMMV 176
             + 
Sbjct: 164 SFLE 167


>gi|254520242|ref|ZP_05132298.1| exonuclease [Clostridium sp. 7_2_43FAA]
 gi|226913991|gb|EEH99192.1| exonuclease [Clostridium sp. 7_2_43FAA]
          Length = 300

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 7/156 (4%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFS 81
           ++ IIEIGA++L +Y K    F+ ++ P+     +P+  ++  I +E L+   SF     
Sbjct: 38  DNEIIEIGAIKLDNYMKPLEEFKTYIKPSVIPVLNPKISEITNIKEEDLEKGVSFEVGIE 97

Query: 82  EFWDFFNEQNAEWIAHNAKFDVGF-INAELQRINKDPLDPSR-IIDTLSIARRKHPSSRN 139
                 ++ +      +   D    I         D LD  +  +D    + +     ++
Sbjct: 98  SLSKIIDDGDIIC---SWAKDDIIEIINNAVYHKYDNLDWLKNYLDLQEYSTKILGKKKS 154

Query: 140 -DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             L +  +   I I +   H AL D+   S V+ ++
Sbjct: 155 LSLKNALEELKIRIDNNKLHDALNDAIYTSLVFKRI 190


>gi|262275634|ref|ZP_06053443.1| exodeoxyribonuclease I [Grimontia hollisae CIP 101886]
 gi|262219442|gb|EEY70758.1| exodeoxyribonuclease I [Grimontia hollisae CIP 101886]
          Length = 474

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 63/204 (30%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M    +     FD ET G     DR  +   V    D++       ++  P       PE
Sbjct: 1   MNNSEQPTFFFFDYETFGTSPALDRPCQFAGVRTDKDFNIIGEPLVIYCQPPNDYLPQPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +  +K         ++  +  +      + +N  +FD       L R   D
Sbjct: 61  ACLITGITPQTAVKRGLPEPEFIAKIHEQLSMPGTCAVGYNNIRFDDEVTRYTLYRNFFD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P              +D +  A    P                L  L    GI   H + 
Sbjct: 121 PYGWIWQNGNSRWDLLDVMRAAYALRPDGIEWPVNDEGNISFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D H   ++  K+     ++
Sbjct: 179 HDAMADVHATIEMAKKLKAAQPRL 202


>gi|148379717|ref|YP_001254258.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. ATCC 3502]
 gi|153933415|ref|YP_001384014.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. ATCC 19397]
 gi|153934824|ref|YP_001387556.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. Hall]
 gi|148289201|emb|CAL83296.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502]
 gi|152929459|gb|ABS34959.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. ATCC 19397]
 gi|152930738|gb|ABS36237.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. Hall]
 gi|322805994|emb|CBZ03561.1| DNA polymerase III epsilon subunit [Clostridium botulinum H04402
           065]
          Length = 195

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 66/192 (34%), Gaps = 29/192 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHG 64
           M+KI  D ETTGL+     II++   V  +++    + +F      +       A  +HG
Sbjct: 1   MKKIFIDTETTGLEP--GEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEESAEAIHG 58

Query: 65  ITDEFLK---DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            + E LK       F  + SE     + ++  +IAHN  FD  F+ AE  R+N     P 
Sbjct: 59  FSVEKLKILSKGKKFKDLASEISS--DLKDGIFIAHNVNFDRKFVTAEFNRLNDMNWIPK 116

Query: 122 RIIDTLSIAR-------RKHPSSRNDLNSLCKRYGIT-------------ISHRSKHGAL 161
               T+   +       R     +  L        I                    H A 
Sbjct: 117 EFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLNIDKKIVLKGAKKLFNCDDVGFHDAR 176

Query: 162 LDSHLLSDVYIK 173
            D   L   Y +
Sbjct: 177 YDVAALVSCYYR 188


>gi|168184675|ref|ZP_02619339.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           Bf]
 gi|237795168|ref|YP_002862720.1| putative DNA polymerase III subunit epsilon [Clostridium botulinum
           Ba4 str. 657]
 gi|182672241|gb|EDT84202.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           Bf]
 gi|229261088|gb|ACQ52121.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           Ba4 str. 657]
          Length = 195

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 66/192 (34%), Gaps = 29/192 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHG 64
           M+KI  D ETTGL+     II++   V  +++    + +F      +       A  +HG
Sbjct: 1   MKKIFIDTETTGLEP--GEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEESAEAIHG 58

Query: 65  ITDEFLK---DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            + E LK       F  + SE     + +N  +IAHN  FD  F+ AE  R+N     P 
Sbjct: 59  FSVEKLKILSKGKKFKDLASEISS--DLKNGIFIAHNVNFDRKFVTAEFNRLNDMNWIPK 116

Query: 122 RIIDTLSIAR-------RKHPSSRNDLNSLCKRYGIT-------------ISHRSKHGAL 161
               T+   +       R     +  L        I                    H A 
Sbjct: 117 EFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLNIDKKIVLKGAKKLFNCDDVGFHDAR 176

Query: 162 LDSHLLSDVYIK 173
            D   L   Y +
Sbjct: 177 YDVAALVSCYYR 188


>gi|227357738|ref|ZP_03842087.1| exodeoxyribonuclease I [Proteus mirabilis ATCC 29906]
 gi|227162067|gb|EEI47081.1| exodeoxyribonuclease I [Proteus mirabilis ATCC 29906]
          Length = 476

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 80/219 (36%), Gaps = 25/219 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE 68
           ++D ET G     DR  +   V   +D++       ++  PN      PEA+ + GIT +
Sbjct: 12  IYDYETFGTHPAMDRPAQFAGVRTDMDFNIIEDPLVIYCKPNDDYLPQPEAVMITGITPQ 71

Query: 69  -FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--- 123
             LK+  S +    +    F++ N+  + +N  +FD       L R   DP   S     
Sbjct: 72  IALKNGVSEAEFTRQIHQAFSQPNSCIMGYNNLRFDDEVTRNILYRNFYDPYAYSWQKGN 131

Query: 124 -----IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                +D L       P                L  L K  GI  SH + H A+ D +  
Sbjct: 132 SRWDLLDVLRACYALRPEGINWPENDDGFPSFRLELLTKANGI--SHENAHDAMSDVYAT 189

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
             +  K+     ++   F    D+   +    +P ++ L
Sbjct: 190 IAMAKKLKQAQPRMFDYFFNLRDKRKVQALIDIPTMTPL 228


>gi|315644054|ref|ZP_07897224.1| DNA polymerase III subunit epsilon [Paenibacillus vortex V453]
 gi|315280429|gb|EFU43718.1| DNA polymerase III subunit epsilon [Paenibacillus vortex V453]
          Length = 397

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 81/219 (36%), Gaps = 9/219 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHG 64
           + +  VFD+E T    +N  ++EIGAV +         TF  ++ P+G    P A+   G
Sbjct: 22  EQKFCVFDLEATDDQVENAEVVEIGAVRMDSTGIQEEQTFHTYIKPSGPIPQPIAVS-TG 80

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI 123
           I +  ++  P F   +  F  F NE    ++ +   +F +  +  E  R    P   +  
Sbjct: 81  IYNADVEGSPRFPKGYGMFTGFANE--CIFVTYGGYEFVLPLLQRECARHGL-PEPANPC 137

Query: 124 IDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ID  ++    HP   +   +  +   YG   +       + +  L+  +++ MM      
Sbjct: 138 IDIKAMFAGLHPEVEDEITMEMMMDYYGFETTSHKSGNRIGNYMLIGHIWMDMMQELKAR 197

Query: 182 NF-GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           +    +  E    K  +            K  F  +T  
Sbjct: 198 SIQHLEYPEPLIVKRFQHPSKRSVDTGSRKVRFPALTDS 236


>gi|229071034|ref|ZP_04204260.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus F65185]
 gi|229080741|ref|ZP_04213259.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock4-2]
 gi|229128808|ref|ZP_04257785.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           BDRD-Cer4]
 gi|229146103|ref|ZP_04274480.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           BDRD-ST24]
 gi|229151731|ref|ZP_04279932.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus m1550]
 gi|228631792|gb|EEK88420.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus m1550]
 gi|228637443|gb|EEK93896.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           BDRD-ST24]
 gi|228654696|gb|EEL10557.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           BDRD-Cer4]
 gi|228702475|gb|EEL54943.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock4-2]
 gi|228711974|gb|EEL63923.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus F65185]
          Length = 273

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++ +   K    F   + P+ R  +    KL GIT + L     F  I  +F
Sbjct: 18  EIVDIGAVKIEIGTMKIIEEFSELVKPSAR-LTRHTTKLTGITKKDLMGVEKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIIDT---LSIARRKHPSSR 138
             F   + + +++   + D  F++ +      +   ++    ID    +  A  +     
Sbjct: 77  IQFIG-EGSIFVSWGKE-DYRFLSHDCTLYGVECPSIEKENRIDLQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L    ++  +T   +  H AL D+   +++ +K
Sbjct: 135 PSLQFAVEQLALTWEGKQ-HRALADAENTANILLK 168


>gi|87124219|ref|ZP_01080068.1| Exonuclease [Synechococcus sp. RS9917]
 gi|86167791|gb|EAQ69049.1| Exonuclease [Synechococcus sp. RS9917]
          Length = 261

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 64/172 (37%), Gaps = 14/172 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +    ++ D ET+GLD + D+ +E+GA+      +     Q FL P        A  ++ 
Sbjct: 29  DPRTLLILDTETSGLDPEQDQCLEVGAILFDVPEREVLVQQSFLLPVEHNP---AQAINH 85

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I     +    +           +  +   +AH+A FD  +           P   +  +
Sbjct: 86  IAASATRCPQPWREGLRYLQALMDTADL-LVAHHAAFDRQWFGR-----GHLPAARAAWL 139

Query: 125 DTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            T+   R         R  +  L   +GI +   + H AL D   +++V+ +
Sbjct: 140 CTMDDIRWPAELQLRPRPSVRDLALAHGIPVW--AVHRALADCVYIAEVFKR 189


>gi|228953804|ref|ZP_04115843.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228805772|gb|EEM52352.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 273

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++ +   K    F   + P+ R  +    KL GIT + L     F  I  +F
Sbjct: 18  EIVDIGAVKIEIGTMKIIEEFSELVKPSAR-LTRHTTKLTGITKKDLMGVEKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIIDT---LSIARRKHPSSR 138
             F   + + +++   + D  F++ +      +   ++    ID    +  A  +     
Sbjct: 77  IQFIG-EGSIFVSWGKE-DYRFLSHDCTLYGVECPSIEKENRIDLQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L    ++  +T   +  H AL D+   +++ +K
Sbjct: 135 PSLQFAVEQLALTWEGKQ-HRALADAENTANILLK 168


>gi|319954735|ref|YP_004166002.1| excinuclease abc c subunit domain protein [Cellulophaga algicola
           DSM 14237]
 gi|319423395|gb|ADV50504.1| Excinuclease ABC C subunit domain protein [Cellulophaga algicola
           DSM 14237]
          Length = 466

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 19/165 (11%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
           G      R + I   + +D   T       + P  R       +  G+TD  L + PSFS
Sbjct: 15  GRKPLYFRTVGIVIHKCIDGDWT-CVLATHINPEER-IPLYIQEATGLTDVALLNAPSFS 72

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHP-S 136
            +          Q    + HN  F    +  + + I      P   + T+ ++++  P  
Sbjct: 73  EVADTILREL--QGCILVGHNISFLHYHLKTQFRHIGYAFDMP--QLCTVRLSKKLIPNM 128

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSH-----LLSDVYIKMMV 176
           +  +L  L    GI          + DS        S ++ +++ 
Sbjct: 129 ASYELPYLTSVLGIPFD-------VADSLEESNDATSALFQRLLA 166


>gi|260773739|ref|ZP_05882654.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260610700|gb|EEX35904.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 237

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 73/182 (40%), Gaps = 14/182 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              ++++ +V D ET+GL+ + D I+ +G + +     +  T Q +   +      E   
Sbjct: 45  TPLSQLKCVVLDFETSGLNPRQDEILSVGMINIHYPVMSLATAQHYYVESEHCIEAETAV 104

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           ++ I  E L    S   +     +  +      IAH A+ +  F+   L   +  PL P 
Sbjct: 105 VNHIVPETLLGGISRHELIECLVESLS--GKVVIAHGAEIEKQFLRQLLSLEDSLPL-PL 161

Query: 122 RIIDTLSIAR-------RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DT+ + R         +P  R  L  + ++ G+       H A  D     ++++ +
Sbjct: 162 IFLDTMRLERSLIKYRGIMYPDLR--LAHIREQKGLPPYL--AHNAFADVVATGELFLAL 217

Query: 175 MV 176
           + 
Sbjct: 218 VE 219


>gi|226493850|ref|NP_001151909.1| exonuclease [Zea mays]
 gi|195650883|gb|ACG44909.1| exonuclease [Zea mays]
          Length = 302

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 83/225 (36%), Gaps = 28/225 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDR---IIEIGAVELLDYSKT-NRTFQVFLCPNGRKNS 56
           M  ++++  + FD+ETT   +       ++E GA+ +         ++   + P     S
Sbjct: 1   MTMRDEI--VFFDVETTAPSAAGPGRWWLLEFGAILVCPRKLVEVGSYDTLIRPG--DLS 56

Query: 57  PEALKLHGITDEFL-----KDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAEL 110
             + +      + +        P F  +  + +D  + +   W  HN  +FD   I    
Sbjct: 57  AVSRRFT----DDVEAAIMASAPPFKDVADKIFDILDGR--VWAGHNIQRFDCPRIREAF 110

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLS 168
             I +   +P  +ID+L++          DL   +L   +GI    + KH  L D+ +  
Sbjct: 111 ADIGRPAPEPVGVIDSLNVLAAHFGRRAGDLKMATLATYFGI---GKQKHRGLDDARMNL 167

Query: 169 DVYIKM---MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
           +V       ++  S +       + R     ++T    ++    K
Sbjct: 168 EVLKHCATVLLLESSLPDVLCAQQSRRAAVTRRTSQAQTIKPPPK 212


>gi|160689390|gb|ABX45553.1| polymerase C [Bacillus mojavensis]
 gi|160689392|gb|ABX45554.1| polymerase C [Bacillus mojavensis]
 gi|160689432|gb|ABX45574.1| polymerase C [Bacillus mojavensis]
          Length = 259

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           D+GF+N   +++ +     + +IDTL + R  +P    + LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAFKKLLQVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFNIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+   + + +KM+   ++  I +  + NE+
Sbjct: 59  IYDTEATAYLLLKMLEDAAEKGIQYHDQLNEN 90


>gi|227832962|ref|YP_002834669.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453978|gb|ACP32731.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 205

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 78/190 (41%), Gaps = 14/190 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              + +  +  D+ETT LD +  +I+ IG V  ++    + +   +    G + + +A  
Sbjct: 18  TPLDDLNLLAVDMETTSLDPRRGKIVSIGWV-PVNGGVIDLSGAGYTVVRGAQVAEDA-H 75

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +H +T E +       S  ++       Q    +AH A  +VGFI A  + +        
Sbjct: 76  VHLLTQEVIDAGEELDSAVAQLRQAL--QGRALLAHFAALEVGFIEAASREVFGQR-PRL 132

Query: 122 RIIDTLSIARR------KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++DT ++ RR       +P   +  L  +  RYG+       H AL D+   +++Y+  
Sbjct: 133 SVVDTFALERRHMERMGTYPRGEDLRLPRVRARYGLPRYG--SHNALSDALACAELYLAQ 190

Query: 175 MVGGSQINFG 184
                 +  G
Sbjct: 191 RGRTRAVTLG 200


>gi|221231753|ref|YP_002510905.1| exonuclease [Streptococcus pneumoniae ATCC 700669]
 gi|220674213|emb|CAR68744.1| putative exonuclease [Streptococcus pneumoniae ATCC 700669]
          Length = 196

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 60/184 (32%), Gaps = 25/184 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R      I FD+E    +       +I++ AV   D  + +  +  ++          
Sbjct: 1   MERLED--YIAFDLE---FNQHEGQTHLIQVSAVRFRDGREID-AYDSYVH-TSVPLKSF 53

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDP 117
              L GIT E LKD P    +  EF +F        I +NA   D+  +           
Sbjct: 54  INGLTGITAETLKDAPPVEKVLEEFQEFVGS--LLMIGYNAAKSDLPILAEH-----GLD 106

Query: 118 LDPSRIIDTLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 +D    A        H  +   L ++    G        H +L D+ + + VY 
Sbjct: 107 YSQQYKVDLYDEAFERRSSDLHGIANLKLQTVASFLGF---QGQSHNSLEDARMTARVYE 163

Query: 173 KMMV 176
             + 
Sbjct: 164 SFLE 167


>gi|149186517|ref|ZP_01864829.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21]
 gi|148829744|gb|EDL48183.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21]
          Length = 297

 Score = 79.5 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 19/170 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTF--QVFLCPNGRKNSPEALKLHGI 65
            + D ETTGL ++ D IIE+  +     D  +    F    +L   G++  P+   + G+
Sbjct: 50  AIVDTETTGLSAETDVIIELAIMLCFVGDNGEVIGHFGPVSWLQDPGQELDPKITLVTGL 109

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRI-NKDPLDPSRI 123
             + LK++    ++     D      A+ I AHNAKFD GFI      +  K        
Sbjct: 110 GAQHLKNQKINDTVARGLLD-----RADLIAAHNAKFDAGFIERRYPDLAGKAWACSCSE 164

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           ID L +            ++L    G        H A  D   L  +   
Sbjct: 165 IDWLKLGY-----EGRSQSALLAHAG---WFSDAHRAAADVWALFWLLQH 206


>gi|322374397|ref|ZP_08048911.1| exonuclease [Streptococcus sp. C300]
 gi|321279897|gb|EFX56936.1| exonuclease [Streptococcus sp. C300]
          Length = 197

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 64/182 (35%), Gaps = 24/182 (13%)

Query: 4   KNKMR-KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             K+R  I FD+E    +       +I++ AV   D  +    F  ++            
Sbjct: 1   MEKLRDYIAFDLE---FNQHEGVTHLIQVSAVRFQDGQEYA-AFDSYVY-TTAPLKSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT E LKD P    +  +F  F    +   + +NA   D+  +         D  D
Sbjct: 56  GLTGITAETLKDAPKVEQVLKDFQAFVG--DLPIVGYNAAKSDLPILLEH----GIDYRD 109

Query: 120 PSRIIDTLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + +D    A        H  +   L ++    G    H   H +L D+ + + VY   
Sbjct: 110 QYK-VDLYEEAFERRSSDLHGIANLKLQTVANFLGF---HGKSHNSLEDARMTARVYEAF 165

Query: 175 MV 176
           + 
Sbjct: 166 LE 167


>gi|15451562|gb|AAK98686.1|AC021893_20 Putative exonuclease [Oryza sativa Japonica Group]
 gi|31432000|gb|AAP53699.1| exonuclease family protein, expressed [Oryza sativa Japonica Group]
 gi|222612804|gb|EEE50936.1| hypothetical protein OsJ_31475 [Oryza sativa Japonica Group]
          Length = 436

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 15/171 (8%)

Query: 9   KIVFDIETT---GLDSKNDR-IIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLH 63
              FD+ET+   G   +  R ++E G++ L     +    F   + P+      EAL+  
Sbjct: 23  IAFFDVETSMPWG--PRERRTLLEFGSIFLCPRLVEVAEPFVTLVRPSDLGVVTEALERK 80

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSR 122
           GIT   L+D P F  +     +  + +   W  HN   FD   I      I + P +P  
Sbjct: 81  GITRGALEDAPPFCDVADNIHNVLHGR--IWAGHNIISFDSEIIREAFAEIGRSPPEPKG 138

Query: 123 IIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +IDTL +  +     +    + +L   + +       H +L D  +  DV 
Sbjct: 139 MIDTLPLLTQTFGRRAGNMKMANLADYFNL---GPQIHRSLYDVRMNLDVL 186


>gi|241666527|ref|YP_002984611.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240861984|gb|ACS59649.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 262

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 67/181 (37%), Gaps = 21/181 (11%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEA 59
           +K R  V D+ET G +  ND + E+G  +++      +        + + P GR  SPE 
Sbjct: 15  HKSRIRVVDLETAG-NGLND-VCEVGWQDVVLGHDGGWQVDEERGSLLINP-GRPISPET 71

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +H I D  +   P +  I S          A   AH A F+  +              
Sbjct: 72  MAIHHIVDAEVATAPFWKEIASSVLRPEGGVIA-LAAHRASFEQRYCTPRF-------TG 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT--ISHR---SKHGALLDSHLLSDVYIKM 174
            +  I T   A R  P      N + +   +   + H      H A+ D+++ +     M
Sbjct: 124 GAAWICTWKCALRLWPELPRFSNQMLRYLRMPEGLVHAIGLPAHRAMPDAYVTAHHLRDM 183

Query: 175 M 175
           +
Sbjct: 184 L 184


>gi|161833722|ref|YP_001597918.1| putative DNA polymerase III subunit alpha (dnaE)/DNA polymerase
           III, epsilon subunit (dnaQ) fusion [Candidatus Sulcia
           muelleri GWSS]
 gi|152206212|gb|ABS30522.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase
           III, epsilon subunit (dnaQ) fusion [Candidatus Sulcia
           muelleri GWSS]
          Length = 1411

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 23/190 (12%)

Query: 9   KIVFDIETTGLDSKND------------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
            I+FD ETTGL    D            R++++  V L +  +        + P G +  
Sbjct: 2   YIIFDTETTGLPLPKDFNPPIINIINLPRLVKLSWVLLDEKLQLIELKDYIIKPEGYEIP 61

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114
             + K+HGI+ ++  +K    + +  EF +   +++   I HN  FD+  + AE  RIN 
Sbjct: 62  FNSTKIHGISTKYAIEKGIKINFVLEEF-NLIIKKSNFLIGHNVFFDIKIVCAEFIRINK 120

Query: 115 KDPLDPSRIIDTLSIA------RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           K      +IIDT  I+      +         L  L K+  +       H +  D    +
Sbjct: 121 KISFFKKKIIDTKEISINYCAIKMGEKFKWPTLTELYKK--LFNDTFIAHDSKSDVLATT 178

Query: 169 DVYIKMMVGG 178
             + +++  G
Sbjct: 179 KCFFELLRIG 188


>gi|54026013|ref|YP_120255.1| DNA polymerase III subunit epsilon [Nocardia farcinica IFM 10152]
 gi|54017521|dbj|BAD58891.1| putative DNA polymerase [Nocardia farcinica IFM 10152]
          Length = 229

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 11/154 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   ++    FD+ETT  D  + R++    + +       R +   +         EA +
Sbjct: 1   MTWTQLPLAAFDLETTSADPHSARVVTASIIRVDGGDVRARNW---IANPHIPIPAEATE 57

Query: 62  LHGITDEFLK-----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           +HG TDE+++          + + +E       +      +N  FD   +          
Sbjct: 58  IHGYTDEYVQKHGRPHADVIAEVTAELHA-CWAEGRCVAVYNGSFDFTVLATHDPSFAVS 116

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150
            L     +  L     ++      L+++C  YG+
Sbjct: 117 GLVVDAFV--LDKKYDRYRRGSRKLSAVCIHYGV 148


>gi|228940620|ref|ZP_04103186.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973539|ref|ZP_04134123.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980098|ref|ZP_04140414.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           Bt407]
 gi|228779684|gb|EEM27935.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           Bt407]
 gi|228786234|gb|EEM34229.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228819126|gb|EEM65185.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 273

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 67/155 (43%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++ +   K    F   + P+ R  +    KL GIT + L D   F  I  +F
Sbjct: 18  EIVDIGAVKIEIGTMKIIEEFSELVKPSAR-LTRHTTKLTGITKKDLMDVEKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIIDT---LSIARRKHPSSR 138
             F   +++ +++   + D  F++ +    + +   ++    ID    +  A  +     
Sbjct: 77  IQFIG-EDSIFVSWGKE-DYRFLSHDCTLHDVECPSIEKESRIDLQKFVFQAYEELFEHP 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L    ++  +T   +  H AL D+   +++ +K
Sbjct: 135 PSLQFAVEQLALTWEGKQ-HRALADAENTANILLK 168


>gi|228476985|ref|ZP_04061623.1| DNA polymerase III subunit epsilon [Streptococcus salivarius SK126]
 gi|228251004|gb|EEK10175.1| DNA polymerase III subunit epsilon [Streptococcus salivarius SK126]
          Length = 196

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 75/183 (40%), Gaps = 25/183 (13%)

Query: 3   RKNKMRKIVFDIE--TT-GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
            +N    I FD+E  T  G       II++ AV++  + + ++ F  F+  +        
Sbjct: 1   MENLETYIAFDLEFNTVDGFS----HIIQVSAVKMEQHEEVDQ-FDSFVY-SDVPLQSFI 54

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL 118
             L GIT + +   P   S+ ++F  F    +   I +NA K D+  ++      N   L
Sbjct: 55  NGLTGITADKIAKAPKLESVLADFKSFVG--DTPLIGYNALKSDLPILSE-----NGLDL 107

Query: 119 DPSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +    +D    A  +  S  N      L S+ + +GI       H +L D+ + + +Y K
Sbjct: 108 EDQYALDIFDEAFDRRASDLNGIVNLKLTSVAEFFGIK---GHGHNSLEDARMTAQIYEK 164

Query: 174 MMV 176
            + 
Sbjct: 165 FLE 167


>gi|168207510|ref|ZP_02633515.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170661145|gb|EDT13828.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens E str. JGS1987]
          Length = 204

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 28/184 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ + FD ETTG+   +  I ++  + +   +K  +T    +     +  PEA ++HG +
Sbjct: 1   MKLLFFDTETTGVKPGS--ICQLSYILVDTSTKPQKTIGKNIFFTVDEMEPEAERIHGFS 58

Query: 67  DE---FLKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            E    L +   F  +++ F  DF        I HN +FD+ F+  EL  +  +  +P+ 
Sbjct: 59  LEKLYELSEGMYFEDLYANFINDFLEAD--FIIGHNVQFDIKFLKHELLGLG-EFFEPNN 115

Query: 123 IIDTLSI----ARRKHPSSRN---DLNSLCKRYGITISH------------RSKHGALLD 163
           +  T+       +   P+       L  + K   IT S              + H A  D
Sbjct: 116 VFCTMKYYKDICKILRPTGDYKNPKLEEVIKHLNITDSEISKTANKYFQGSGNYHDARFD 175

Query: 164 SHLL 167
           +   
Sbjct: 176 TAAT 179


>gi|169342705|ref|ZP_02863746.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens C str. JGS1495]
 gi|169299211|gb|EDS81281.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens C str. JGS1495]
          Length = 204

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 74/184 (40%), Gaps = 28/184 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ + FD ETTG+   +  I ++  + +   +K  +T    +     +  PEA ++HG +
Sbjct: 1   MKLLFFDTETTGVKPGS--ICQLSYILVDTSTKPQKTIGKNIFFTVDEMEPEAERIHGFS 58

Query: 67  DE---FLKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            E    L +   F  ++++F  DF        I HN +FD+ F+  EL  +  +  +P+ 
Sbjct: 59  LEKLYELSEGMHFEDLYADFINDFLEAD--FIIGHNVQFDIKFLKHELLGLG-EFFEPNN 115

Query: 123 IIDTLSI----ARRKHPSSRN---DLNSLCKRYGITISH------------RSKHGALLD 163
           +  T+       +   P+       L  + K   IT S              + H A  D
Sbjct: 116 VFCTMKYYKDICKILRPTGDYKNPKLEEVIKHLNITDSEISETANKYFQGSGNYHDARFD 175

Query: 164 SHLL 167
           +   
Sbjct: 176 TAAT 179


>gi|219852875|ref|YP_002467307.1| Exonuclease RNase T and DNA polymerase III [Methanosphaerula
           palustris E1-9c]
 gi|219547134|gb|ACL17584.1| Exonuclease RNase T and DNA polymerase III [Methanosphaerula
           palustris E1-9c]
          Length = 193

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 57/169 (33%), Gaps = 20/169 (11%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            + FD ETTGL  K            RI+E+G V             + + P+G     E
Sbjct: 2   YLFFDTETTGLPKKKHASMHRVANWPRIVELGWVLTDTKGTVIEEAGLLVRPDGFSVPAE 61

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  +HGIT E   ++  + S + + F     EQ+     H   FD   + AEL R     
Sbjct: 62  STAIHGITTEQATEQGSAISEVLARFLLAL-EQSELICGHQVSFDHRVVGAELIRAGMPV 120

Query: 118 LD-PSRIIDTLSIARRK------HPSSRNDLNSLCKRYGITISHRSKHG 159
                    T+  ++        H      L++L             H 
Sbjct: 121 DQLDKPRFCTMEASKTLNRSATGHSPHPLSLSALYLHL-FDEPFAGAHR 168


>gi|188587656|ref|YP_001921717.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188497937|gb|ACD51073.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 204

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 36/191 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPNGRKNSPEALKL 62
           M+ + FD ETT +   +  I ++  + +   SK    T + F   +     + +P A ++
Sbjct: 1   MKLLFFDTETTSIKPGS--ICQLSYITVDASSKPQITTGKNFFFTVD----EMNPSAQEI 54

Query: 63  HGITDE---FLKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           HG + E    L +   F  +  EF+ DF        I HN  FD+ F+  EL  + +D L
Sbjct: 55  HGFSLEKLYELSEGQYFEDLVPEFFKDFIEAD--FLIGHNVNFDIRFLKHELSLLGEDFL 112

Query: 119 DPSRIIDTLSIARRKHPSSR-------NDLNSLCKRYGITISH------------RSKHG 159
                  T+   +      +         L  +    GIT                + H 
Sbjct: 113 PKHS-FCTMMYYKDICKIPKANGEIKNPKLEEVVNFLGITKDQITKTSDRLFQGSGNYHD 171

Query: 160 ALLDSHLLSDV 170
           A  D+     V
Sbjct: 172 ARFDTAATYLV 182


>gi|331266470|ref|YP_004326100.1| DNA polymerase III, epsilon chain [Streptococcus oralis Uo5]
 gi|326683142|emb|CBZ00760.1| DNA polymerase III, epsilon chain [Streptococcus oralis Uo5]
          Length = 197

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 24/182 (13%)

Query: 4   KNKMR-KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             K+R  I FD+E    +       +I++ AV   D  + +  F  ++            
Sbjct: 1   MEKLRDYISFDLE---FNQHEGVTHLIQVSAVRFQDGQE-SAAFDSYVY-TTAPLKSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT E LKD P    +  +F  F    +   + +NA   D+  +         D  D
Sbjct: 56  GLTGITAETLKDAPKVEQVLKDFQAFVG--DLPIVGYNAAKSDLPILLEH----GIDYRD 109

Query: 120 PSRIIDTLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + +D    A        H  +   L ++    G    H   H +L D+ + + VY   
Sbjct: 110 QYK-VDLYEEAFERRSSDLHGIANLKLQTVANFLGF---HGKSHNSLEDARMTARVYEAF 165

Query: 175 MV 176
           + 
Sbjct: 166 LE 167


>gi|15900868|ref|NP_345472.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae TIGR4]
 gi|111657353|ref|ZP_01408111.1| hypothetical protein SpneT_02001430 [Streptococcus pneumoniae
           TIGR4]
 gi|116515938|ref|YP_816361.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae D39]
 gi|148984737|ref|ZP_01818005.1| exonuclease [Streptococcus pneumoniae SP3-BS71]
 gi|148988438|ref|ZP_01819885.1| exonuclease [Streptococcus pneumoniae SP6-BS73]
 gi|149002547|ref|ZP_01827481.1| exonuclease [Streptococcus pneumoniae SP14-BS69]
 gi|149006328|ref|ZP_01830040.1| exonuclease [Streptococcus pneumoniae SP18-BS74]
 gi|149019585|ref|ZP_01834904.1| exonuclease [Streptococcus pneumoniae SP23-BS72]
 gi|168483063|ref|ZP_02708015.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CDC1873-00]
 gi|168491083|ref|ZP_02715226.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CDC0288-04]
 gi|168494423|ref|ZP_02718566.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CDC3059-06]
 gi|168575656|ref|ZP_02721592.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           MLV-016]
 gi|169834430|ref|YP_001694438.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225854497|ref|YP_002736009.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae JJA]
 gi|225858787|ref|YP_002740297.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae 70585]
 gi|237650859|ref|ZP_04525111.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae CCRI
           1974]
 gi|237822226|ref|ZP_04598071.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae CCRI
           1974M2]
 gi|307127457|ref|YP_003879488.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           670-6B]
 gi|14972467|gb|AAK75112.1| exonuclease [Streptococcus pneumoniae TIGR4]
 gi|116076514|gb|ABJ54234.1| exonuclease [Streptococcus pneumoniae D39]
 gi|147759484|gb|EDK66476.1| exonuclease [Streptococcus pneumoniae SP14-BS69]
 gi|147762105|gb|EDK69067.1| exonuclease [Streptococcus pneumoniae SP18-BS74]
 gi|147923128|gb|EDK74243.1| exonuclease [Streptococcus pneumoniae SP3-BS71]
 gi|147926119|gb|EDK77193.1| exonuclease [Streptococcus pneumoniae SP6-BS73]
 gi|147930960|gb|EDK81940.1| exonuclease [Streptococcus pneumoniae SP23-BS72]
 gi|168996932|gb|ACA37544.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           Hungary19A-6]
 gi|172043421|gb|EDT51467.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CDC1873-00]
 gi|183574623|gb|EDT95151.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CDC0288-04]
 gi|183575623|gb|EDT96151.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CDC3059-06]
 gi|183578481|gb|EDT99009.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           MLV-016]
 gi|225720810|gb|ACO16664.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae 70585]
 gi|225723767|gb|ACO19620.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae JJA]
 gi|301799966|emb|CBW32552.1| putative exonuclease [Streptococcus pneumoniae OXC141]
 gi|306484519|gb|ADM91388.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           670-6B]
 gi|332075608|gb|EGI86076.1| exonuclease family protein [Streptococcus pneumoniae GA17545]
 gi|332201459|gb|EGJ15529.1| exonuclease family protein [Streptococcus pneumoniae GA47368]
 gi|332202848|gb|EGJ16917.1| exonuclease family protein [Streptococcus pneumoniae GA41317]
          Length = 196

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 60/184 (32%), Gaps = 25/184 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R      I FD+E    +       +I++ AV   D  + +  +  ++          
Sbjct: 1   MERLED--YIAFDLE---FNQHEGQTHLIQVSAVRFRDGREID-AYDSYVH-TSVPLKSF 53

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDP 117
              L GIT E LKD P    +  EF +F        I +NA   D+  +           
Sbjct: 54  INGLTGITAETLKDAPPVEKVLEEFQEFVGS--LLMIGYNAAKSDLPILAEH-----GLD 106

Query: 118 LDPSRIIDTLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 +D    A        H  +   L ++    G        H +L D+ + + VY 
Sbjct: 107 YSQQYKVDLYDEAFERRSSDLHGIANLKLQTVASFLGF---QGQSHNSLEDARMTARVYE 163

Query: 173 KMMV 176
             + 
Sbjct: 164 SFLE 167


>gi|149010360|ref|ZP_01831731.1| exonuclease [Streptococcus pneumoniae SP19-BS75]
 gi|303254460|ref|ZP_07340566.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS455]
 gi|303259905|ref|ZP_07345880.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP-BS293]
 gi|303262320|ref|ZP_07348264.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264742|ref|ZP_07350660.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS397]
 gi|303267563|ref|ZP_07353409.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS457]
 gi|303269154|ref|ZP_07354933.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS458]
 gi|147764841|gb|EDK71770.1| exonuclease [Streptococcus pneumoniae SP19-BS75]
 gi|301801833|emb|CBW34546.1| putative exonuclease [Streptococcus pneumoniae INV200]
 gi|302598627|gb|EFL65667.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS455]
 gi|302636643|gb|EFL67134.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639110|gb|EFL69570.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP-BS293]
 gi|302641341|gb|EFL71709.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS458]
 gi|302642912|gb|EFL73213.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS457]
 gi|302645829|gb|EFL76058.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS397]
          Length = 196

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 60/184 (32%), Gaps = 25/184 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R      I FD+E    +       +I++ AV   D  + +  +  ++          
Sbjct: 1   MKRLED--YIAFDLE---FNQHEGQTHLIQVSAVRFRDGREID-AYDSYVH-TSVPLKSF 53

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDP 117
              L GIT E LKD P    +  EF +F        I +NA   D+  +           
Sbjct: 54  INGLTGITAETLKDAPPVEKVLEEFQEFVGS--LLMIGYNAAKSDLPILAEH-----GLD 106

Query: 118 LDPSRIIDTLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 +D    A        H  +   L ++    G        H +L D+ + + VY 
Sbjct: 107 YSQQYKVDLYDEAFERRSSDLHGIANLKLQTVASFLGF---QGQSHNSLEDARMTARVYE 163

Query: 173 KMMV 176
             + 
Sbjct: 164 SFLE 167


>gi|38638095|ref|NP_943205.1| hypothetical protein pEL60p06 [Erwinia amylovora]
 gi|37681993|gb|AAQ97880.1| ORF6 [Erwinia amylovora]
          Length = 282

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 55/175 (31%), Gaps = 29/175 (16%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL       +EIG  +          F+  L P       +A  +HGI + 
Sbjct: 104 PLFLDTETTGL-GNTAEALEIGLTDAAGRVI----FETRLKPTVA-IEAQAAAVHGIDEP 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            L   PS+  +  +       +    I  NA FD   +           D L    +   
Sbjct: 158 ALSGAPSWPDVALQLRHAIGAR--PVIIFNAPFDTRILKQTAAAHGDPADWLGELTVYCA 215

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITIS-----------HRSKHGALLDSHLLSDV 170
           + +A     ++         RYG                   H A+ D+ + + V
Sbjct: 216 MELAAGYFGATN--------RYGTISLASAASQAALTWEGEAHSAIADARMTAGV 262


>gi|330873568|gb|EGH07717.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 206

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 8  RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          R  V D ETTG+    + R  EI  V +++  +    FQ  +   G +       L GI+
Sbjct: 3  RIAVIDFETTGISPGHSCRATEIAVV-IMEQGRIVELFQSLMN-AGVRIPAFIEGLTGIS 60

Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNA 92
          +  ++  PS   +  +  DF     A
Sbjct: 61 NNMIRTAPSAERVMGDVADFVGATAA 86


>gi|55823505|ref|YP_141946.1| DNA polymerase III subunit epsilon [Streptococcus thermophilus
           CNRZ1066]
 gi|55739490|gb|AAV63131.1| DNA polymerase III epsilon subunit [Streptococcus thermophilus
           CNRZ1066]
          Length = 196

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 23/182 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            +N    I FD+E    ++ +    II++ AV++  + + ++ +  F+  +         
Sbjct: 1   MENLETYIAFDLE---FNTVDGVSHIIQVSAVKMGQHKEVDQ-YDSFVY-SNVPLQSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD 119
            L GIT + +   P   S+ +EF  F    N   I +NA K D+  +       N   L+
Sbjct: 56  GLTGITADKIAKAPKLESVLAEFKAFIG--NTPLIGYNALKSDLPILAE-----NGLNLE 108

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +D    A  +  S  N      L S+   +GI       H +L D+ + + +Y K 
Sbjct: 109 EQYALDVFDEAFDRRASDLNGIVNLKLTSVADFFGIK---GHGHNSLEDARMTAQIYKKF 165

Query: 175 MV 176
           + 
Sbjct: 166 LE 167


>gi|229140142|ref|ZP_04268700.1| exonuclease [Bacillus cereus BDRD-ST26]
 gi|228643228|gb|EEK99501.1| exonuclease [Bacillus cereus BDRD-ST26]
          Length = 208

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++     K    F   + P G + +    KL GIT + L +   F  I   F
Sbjct: 18  EIVDIGAVKIEASTMKIIGEFSELVKP-GARLTRHTTKLTGITKKDLMNVEKFPQIIERF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIIDT---LSIARRKHPSSR 138
             F   +++ ++    + D  F++ +      +       R ID    +  A  +     
Sbjct: 77  IQFIG-EDSIFVTWGKE-DYRFLSHDCTLHGVECPCMEKERRIDLQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L S  ++ G+    +  H AL D+   +++ +K
Sbjct: 135 PSLQSAVEQLGLIWEGKQ-HRALADAENTANILLK 168


>gi|225865501|ref|YP_002750879.1| exonuclease family protein [Bacillus cereus 03BB102]
 gi|225791033|gb|ACO31250.1| exonuclease family protein [Bacillus cereus 03BB102]
          Length = 281

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 15/181 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR----IIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSP 57
            +N    IVFDIE              I++IGAV++     K    F   + P G + + 
Sbjct: 1   MENATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEASTMKVIGEFSELVKP-GARLTR 58

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              KL GIT + L     F  I  +F  F   +++ ++    + D  F++ +    + + 
Sbjct: 59  HTTKLTGITKKDLIGVEKFPQIIEKFIGFIG-EDSIFVTWGKE-DYRFLSHDCTLHSVEC 116

Query: 118 LDP--SRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 R ID    +  A  +       L S  ++ G+    +  H AL D+   +++ +
Sbjct: 117 PCMEKERRIDLQKFVFQAYEELFEHTPSLQSAVEQLGLIWEGKQ-HRALADAENTANILL 175

Query: 173 K 173
           K
Sbjct: 176 K 176


>gi|315613078|ref|ZP_07887989.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|315315188|gb|EFU63229.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           sanguinis ATCC 49296]
          Length = 197

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 63/182 (34%), Gaps = 24/182 (13%)

Query: 4   KNKMR-KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             K+R  I FD+E    +       +I++ AV   D  +    F  ++            
Sbjct: 1   MEKLRDYIAFDLE---FNQHEGVTHLIQVSAVRFQDGQECA-AFDSYVY-TTAPLKSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT E LKD P    +   F  F    +   + +NA   D+  +         D  D
Sbjct: 56  GLTGITAETLKDAPKVEQVLKNFQAFVG--DLPIVGYNAAKSDLPILLEH----GIDYRD 109

Query: 120 PSRIIDTLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + +D    A        H  +   L ++    G    H   H +L D+ + + VY   
Sbjct: 110 QYK-VDLYEEAFERRSSDLHGIANLKLQTVANFLGF---HGKSHNSLEDARMTARVYEAF 165

Query: 175 MV 176
           + 
Sbjct: 166 LE 167


>gi|170756602|ref|YP_001781306.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           B1 str. Okra]
 gi|169121814|gb|ACA45650.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           B1 str. Okra]
          Length = 195

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 65/192 (33%), Gaps = 29/192 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIG-AVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M+KI  D ETTGL+     II++   V  ++   +   +F      +       A  +HG
Sbjct: 1   MKKIFIDTETTGLEP--GEIIQLTYCVCDINSRGEEKVSFAKNFFFDVDYIEESAEAIHG 58

Query: 65  ITDEFLK---DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            + E LK       F  + SE     + ++  +IAHN  FD  F+ AE  R+N     P 
Sbjct: 59  FSVEKLKILSKGKKFKDLASEISS--DLKDGIFIAHNVNFDRKFVTAEFNRLNDMNWIPK 116

Query: 122 RIIDTLSIAR-------RKHPSSRNDLNSLCKRYGIT-------------ISHRSKHGAL 161
               T+   +       R     +  L        I                    H A 
Sbjct: 117 EFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLNIDKKIVLKGAKKLFNCDDVGFHDAR 176

Query: 162 LDSHLLSDVYIK 173
            D   L   Y +
Sbjct: 177 YDVAALVSCYYR 188


>gi|270292817|ref|ZP_06199028.1| exonuclease [Streptococcus sp. M143]
 gi|270278796|gb|EFA24642.1| exonuclease [Streptococcus sp. M143]
          Length = 196

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 24/182 (13%)

Query: 4   KNKMR-KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             K+R  I FD+E    +       +I++ AV   D  + +  F  ++            
Sbjct: 1   MEKLRDYIAFDLE---FNQHEGVTHLIQVSAVRFQDGQE-SAAFDSYVH-TSVPLKSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT E LKD P    +  +F  F    +   + +NA   D+  +         D  D
Sbjct: 56  GLTGITAETLKDAPKVEKVLKDFQAFVG--DLPIVGYNAAKSDLPILLEH----GIDYRD 109

Query: 120 PSRIIDTLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + +D    A        H  +   L ++    G    H   H +L D+ + + VY   
Sbjct: 110 QYK-VDLYDEAFERRSSDLHGIANLKLQTVANFLGF---HGKSHNSLEDARMTARVYEAF 165

Query: 175 MV 176
           + 
Sbjct: 166 LE 167


>gi|218184498|gb|EEC66925.1| hypothetical protein OsI_33530 [Oryza sativa Indica Group]
          Length = 422

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 16/172 (9%)

Query: 9   KIVFDIETT---GLDSKNDR-IIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKL 62
              FD+ET+   G   +  R ++E G++ L           F   + P+      EAL+ 
Sbjct: 23  IAFFDVETSMPWG--PRERRTLLEFGSIFLCPRQLVEVAEPFITLVRPSDLGVVTEALER 80

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
            GIT   L+D P F  +     +  + +   W  HN   FD   I      I + P +P 
Sbjct: 81  KGITRGALEDAPPFCDVADNIHNVLHGR--IWAGHNIISFDSEIIREAFAEIGRSPPEPK 138

Query: 122 RIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +IDTL +  +     +    + +L   + +       H +L D  +  DV 
Sbjct: 139 GMIDTLPLLTQTFGRRAGNMKMANLADYFNL---GPQIHRSLYDVRMNLDVL 187


>gi|260102659|ref|ZP_05752896.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260083529|gb|EEW67649.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
          Length = 249

 Score = 79.1 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 5/114 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIETTGLD   D+II IGAV+ +  SK  R F   +     +      K+  +T E
Sbjct: 127 IVALDIETTGLDITKDQIISIGAVKYISKSKCER-FYRLIK-TDYEIPTHISKITQLTSE 184

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            L +          +   F  ++    + +N  FD+ F+N + Q+ N   +  +
Sbjct: 185 KLNQSGIELFDALEDLKKFLADR--LIVGYNLNFDINFLNRDYQKYNNSHILNN 236


>gi|269968960|ref|ZP_06182899.1| putative DNA polymerase III, epsilon subunit [Vibrio alginolyticus
           40B]
 gi|269826429|gb|EEZ80824.1| putative DNA polymerase III, epsilon subunit [Vibrio alginolyticus
           40B]
          Length = 162

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 11/156 (7%)

Query: 28  EIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86
            I A +++D      + F+V L    +     ++K+H I  + L D  S      E  DF
Sbjct: 2   TIAATKIIDNRIITSQPFEVRLR-APQSLDSGSVKIHRIRHQDLVDGISEKEALLELLDF 60

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-----DL 141
              +    + ++ ++D   ++    R    PL    I  +     +      N      L
Sbjct: 61  IGNR--PLVGYHIRYDKKILDLACLRQLGFPLPNPLIEVSQIYHDKLERHLPNAYFDLSL 118

Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +++CK   + I  +  H AL D+   + V++++  G
Sbjct: 119 DAICKHLELPIQDK--HDALQDAISAALVFVRLTKG 152


>gi|148998570|ref|ZP_01826010.1| exonuclease [Streptococcus pneumoniae SP11-BS70]
 gi|225856651|ref|YP_002738162.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae P1031]
 gi|307067654|ref|YP_003876620.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
           [Streptococcus pneumoniae AP200]
 gi|147755568|gb|EDK62615.1| exonuclease [Streptococcus pneumoniae SP11-BS70]
 gi|225725179|gb|ACO21031.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae P1031]
 gi|301794129|emb|CBW36537.1| putative exonuclease [Streptococcus pneumoniae INV104]
 gi|306409191|gb|ADM84618.1| DNA polymerase III, epsilon subunit-like 3'-5' exonuclease
           [Streptococcus pneumoniae AP200]
 gi|332204995|gb|EGJ19060.1| exonuclease family protein [Streptococcus pneumoniae GA47901]
          Length = 196

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 60/184 (32%), Gaps = 25/184 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R      I FD+E    +       +I++ AV   D  + +  +  ++          
Sbjct: 1   MERLED--YIAFDLE---FNQHEGQTHLIQVSAVRFRDGREID-AYDSYVH-TSVPLKSF 53

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDP 117
              L GIT E LKD P    +  EF +F        I +NA   D+  +           
Sbjct: 54  INGLTGITAETLKDAPPVEKVLEEFQEFVGS--LLMIGYNAAKSDLPILAEH-----GLD 106

Query: 118 LDPSRIIDTLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 +D    A        H  +   L ++    G        H +L D+ + + VY 
Sbjct: 107 YSQQYKVDLYDEAFERRSSDLHGIANLKLQTVASFLGF---QGQSHNSLEDARMTARVYE 163

Query: 173 KMMV 176
             + 
Sbjct: 164 SFLE 167


>gi|219883058|ref|YP_002478222.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
 gi|219862064|gb|ACL42405.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
          Length = 187

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 10/176 (5%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M     +     D E    +S       +G   + D   T  T    + P    +S +A 
Sbjct: 1   METTPGLNFTAIDFEAA--NSDRASACSVGVTTVRDGLITGTT-SWLIRPFTGLDSFDAY 57

Query: 61  --KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             ++HGI    + D                  +   +AHN  +D   +    +       
Sbjct: 58  ASRIHGIDASMVIDAQPLKDAMLRLSGIIG--DGPVLAHNITYDATVLRHSFELTGLGQ- 114

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +    T +++R      +  L+ +    G+       H A  DS   + + + +
Sbjct: 115 PRNEFRCTQTLSRAALQLEKTRLHVVTAYLGLP--EFDNHDAAADSLACARIALHI 168


>gi|146088911|ref|XP_001466179.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134070281|emb|CAM68618.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 509

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 82/223 (36%), Gaps = 33/223 (14%)

Query: 6   KMRKIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEA 59
             R   FD+E TG      D   + I E+G    L     + TF   + P  GRK  P  
Sbjct: 87  PFRVFTFDMEFTGPPVFTADGPTEDITELGLYSPL----LDETFSCLVQPVCGRKQGPGV 142

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKF-DVGFIN 107
            +L  ITD  L K+   F+  + +F +F           +E+    ++H  K  DV  I 
Sbjct: 143 EELTHITDMMLEKEGIPFAEAWQQFLNFVQTPQPDEISGSEERILLLSHGGKLADVSLIK 202

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPS---------SRNDLNSLCKRYGITISHRSKH 158
             L++ + +        DT+ + R  H               L  L +   I  +    H
Sbjct: 203 WTLEKFHMELPPSFVFGDTIHLIRDAHRRRPVTIDKHPPSWKLVDLVQWLHIPPTL-PAH 261

Query: 159 GALLDSHLLSD-VYIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A  D+ +  D +Y  ++  G       +    RFF  E K +
Sbjct: 262 RAGNDARMTWDALYHTLLRYGDDEMAPREQLVPRFFDAEAKQL 304


>gi|70732988|ref|YP_262761.1| exonuclease [Pseudomonas fluorescens Pf-5]
 gi|68347287|gb|AAY94893.1| exonuclease [Pseudomonas fluorescens Pf-5]
          Length = 235

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 8/157 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62
             + R +V D+ETTGL+   D+++ IGAV + D +   ++ F+  L   G K SP  L +
Sbjct: 36  LREQRWVVVDVETTGLNLNRDQVLSIGAVVIEDGAIDFSQQFERTLQRQGHKLSPSVL-I 94

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG+    +           +F +F    ++  +A +A FD   +   L+      L    
Sbjct: 95  HGLGPSAIAAGCDPVEALLDFMEFVG--DSPLLAFHAPFDQHMLGRALKDSLGYRL-QHS 151

Query: 123 IIDTLSIARRKHPSSRND---LNSLCKRYGITISHRS 156
            +D   +A    P ++     L+   + + + +  R 
Sbjct: 152 FLDVADMAPLLCPQAQIREAGLDDWVRWFNLQVVERH 188


>gi|322373528|ref|ZP_08048064.1| exonuclease [Streptococcus sp. C150]
 gi|321278570|gb|EFX55639.1| exonuclease [Streptococcus sp. C150]
          Length = 196

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 23/176 (13%)

Query: 9   KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            I FD+E    ++ +    II++ AV++  + +  + F  F+  +          L GIT
Sbjct: 7   YIAFDLE---FNTVDGVSHIIQVSAVKMDRHEEVGQ-FDSFVY-SDVPLQSFINGLTGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIID 125
            + +   P   S+ ++F  F    +   I +NA K D+  +       N   L+    +D
Sbjct: 62  ADKIAKAPKLESVLADFKAFVG--DTPLIGYNALKSDLPVLAE-----NGLDLEEQYALD 114

Query: 126 TLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
               A  +  S  N      L S+   +GI       H +L D+ + + +Y K + 
Sbjct: 115 VFDEAFDRRASDLNGIVNLKLTSVADFFGIK---GHGHNSLEDARMTAQIYEKFLE 167


>gi|297623751|ref|YP_003705185.1| exonuclease RNase T and DNA polymerase III [Truepera radiovictrix
           DSM 17093]
 gi|297164931|gb|ADI14642.1| Exonuclease RNase T and DNA polymerase III [Truepera radiovictrix
           DSM 17093]
          Length = 177

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 11/169 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D ETTGL  K+  +IE+  +        +      + P   + +P A ++H IT   
Sbjct: 14  LILDTETTGL--KSAEVIELALLSTRGEVLLD----TLVRPKVMRLNPYAARVHRITLAE 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L D+P++  +  E       + A  +A NA FD   + A        P         + +
Sbjct: 68  LADRPTWPEVLPELRRL--AERATVLAWNAPFDARMLEATSAAWGL-PHPRLLFACAMRL 124

Query: 130 ARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKMMV 176
             R        L+      G++  +   + H A  D   + +V    + 
Sbjct: 125 YARARGRRSYGLHRALADEGLSELLECYASHRARGDVQFVLEVLRAALR 173


>gi|332970228|gb|EGK09221.1| exonuclease [Psychrobacter sp. 1501(2011)]
          Length = 231

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 31/168 (18%)

Query: 10  IVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +V D ET   D   D R I++  +E      T   +  +   +GR  S    K+HGITD 
Sbjct: 11  LVIDTET---DQGRDPRPIQVATIEA----STGHEWMSYFN-SGRPISAIVTKIHGITDA 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    SF+     F     + +   I HN +FD G I     ++          I T+ 
Sbjct: 63  DVAGLASFN--LDNF-----QVSDYLIGHNVRFDWGVIGRPKVKL----------ICTVR 105

Query: 129 IARRKHPS-SRNDLNSLCKRY----GITISHRSKHGALLDSHLLSDVY 171
           +AR   P   +   +   ++            + H AL D+ +   +Y
Sbjct: 106 LARVAFPEWHKYSQSKCIEQLLGEEEAAEMTAAAHDALGDARMCYLLY 153


>gi|319946218|ref|ZP_08020458.1| exonuclease [Streptococcus australis ATCC 700641]
 gi|319747600|gb|EFV99853.1| exonuclease [Streptococcus australis ATCC 700641]
          Length = 197

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 23/183 (12%)

Query: 9   KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            + FD+E    +    +  II++ AV   D  +    +  +     +        L GIT
Sbjct: 7   YVSFDLE---FNQFEGKYHIIQVSAVRFADGQEVA-HYDSY-AYTDKPLKSFINGLTGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIID 125
            + +   P    + +EF DF  E  +  I +N  K D+  +       N         +D
Sbjct: 62  SDKILQAPPLEQVLAEFRDFVAE--SPLIGYNAIKSDLPILTE-----NGLEFTNQYAVD 114

Query: 126 TLSIARRKHPSSRND-----LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
               A ++ PS  +      L+++ +  G+       H +L D+ + + VY   +     
Sbjct: 115 VFEEASKRRPSDLHGIKNLQLHTVAQFLGVA---GKSHDSLEDARMTALVYEAFLESDRA 171

Query: 181 INF 183
              
Sbjct: 172 RQL 174


>gi|94502355|ref|ZP_01308822.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
 gi|94451087|gb|EAT14045.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
          Length = 511

 Score = 79.1 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 23/190 (12%)

Query: 9   KIVFDIETTGLDSKND------------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
            I+FD ETTGL    D            R++++  V L +  +        + P G +  
Sbjct: 2   YIIFDTETTGLPLPKDFNPPIINIINLPRLVKLSWVLLDEKLQLIELKDYIIKPEGYEIP 61

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114
             + K+HGI+ ++  +K    + +  EF +   +++   I HN  FD+  + AE  RIN 
Sbjct: 62  FNSTKIHGISTKYAIEKGIKINFVLEEF-NLIIKKSNFLIGHNVFFDIKIVCAEFIRINK 120

Query: 115 KDPLDPSRIIDTLSIA------RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           K      +IIDT  I+      +         L  L K+  +       H +  D    +
Sbjct: 121 KISFFKKKIIDTKEISINYCAIKMGEKFKWPTLTELYKK--LFNDTFIAHDSKSDVLATT 178

Query: 169 DVYIKMMVGG 178
             + +++  G
Sbjct: 179 KCFFELLRIG 188


>gi|170760682|ref|YP_001787078.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169407671|gb|ACA56082.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 195

 Score = 79.1 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 66/192 (34%), Gaps = 29/192 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHG 64
           M+KI  D ETTGL+     II++   V  +++    + +F      +       A  +HG
Sbjct: 1   MKKIFIDTETTGLEP--GEIIQLTYCVCDINFKGEEKVSFAKNFFFDVDYIEESAESIHG 58

Query: 65  ITDEFLK---DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            + E LK       F  + SE     + ++  +IAHN  FD  F+ AE  R+N     P 
Sbjct: 59  FSVEKLKILSKGKKFKDLASEISS--DLKDGIFIAHNVNFDRKFVTAEFNRLNDMNWIPK 116

Query: 122 RIIDTLSIAR-------RKHPSSRNDLNSLCKRYGIT-------------ISHRSKHGAL 161
               T+   +       R     +  L        I                    H A 
Sbjct: 117 EFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLNIDKKIVLKGAKKLFNCDDVGFHDAR 176

Query: 162 LDSHLLSDVYIK 173
            D   L   Y +
Sbjct: 177 YDVAALVSCYYR 188


>gi|306829427|ref|ZP_07462617.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           mitis ATCC 6249]
 gi|304428513|gb|EFM31603.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           mitis ATCC 6249]
          Length = 197

 Score = 78.7 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 24/182 (13%)

Query: 4   KNKMR-KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             K+R  I FD+E    +  +    +I++ AV   D  + +  F  ++            
Sbjct: 1   MEKLRDYIAFDLE---FNQHDGVTHLIQVSAVRFQDGQE-SAAFDSYVY-TTAPLKSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT E LKD P    +  +F  F  +  +  + +NA   D+  +         D  D
Sbjct: 56  GLTGITAETLKDAPKVEQVLKDFQAFVGK--SPIVGYNAAKSDLPILLEH----GLDYRD 109

Query: 120 PSRIIDTLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + +D    A        H  +   L ++    G        H +L D+ + + VY   
Sbjct: 110 QYK-VDLYDEAFERRSSDLHGIANLKLQTVANFLGFK---GQSHNSLEDARMTARVYEAF 165

Query: 175 MV 176
           + 
Sbjct: 166 LE 167


>gi|168180335|ref|ZP_02614999.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           NCTC 2916]
 gi|226949002|ref|YP_002804093.1| putative DNA polymerase III subunit epsilon [Clostridium botulinum
           A2 str. Kyoto]
 gi|182668792|gb|EDT80770.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           NCTC 2916]
 gi|226843902|gb|ACO86568.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A2 str. Kyoto]
          Length = 195

 Score = 78.7 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 66/192 (34%), Gaps = 29/192 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHG 64
           M+KI  D ETTGL+     II++   V  +++    + +F      +       A  +HG
Sbjct: 1   MKKIFIDTETTGLEP--GEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEESAEAIHG 58

Query: 65  ITDEFLK---DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            + E LK       F  + SE     + ++  +IAHN  FD  F+ AE  R+N     P 
Sbjct: 59  FSVEKLKILSKGKKFKDLASEISS--DLKDGIFIAHNVNFDRKFVTAEFNRLNDMNWIPK 116

Query: 122 RIIDTLSIAR-------RKHPSSRNDLNSLCKRYGIT-------------ISHRSKHGAL 161
               T+   +       R     +  L        I                    H A 
Sbjct: 117 EFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLDIDKKIVLKGAKKLFNCDDVGFHDAR 176

Query: 162 LDSHLLSDVYIK 173
            D   L   Y +
Sbjct: 177 YDVAALVSCYYR 188


>gi|330837024|ref|YP_004411665.1| Exodeoxyribonuclease I [Spirochaeta coccoides DSM 17374]
 gi|329748927|gb|AEC02283.1| Exodeoxyribonuclease I [Spirochaeta coccoides DSM 17374]
          Length = 474

 Score = 78.7 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 66/179 (36%), Gaps = 26/179 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D+ET GL+   DRI++   V   +D +   +   ++  P       P A  + GIT +  
Sbjct: 11  DLETFGLNPYYDRIVQFAGVRTDMDLTPVGQPILLYARPTIDYLPDPLACLVTGITPQEA 70

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQR-----INKDPLDPSRI 123
            +K    +   +       ++N   +  N+ +FD  FI   L R       ++  D +  
Sbjct: 71  MEKGLRENDFANAILKEMGQKNTCSVGFNSIRFDDEFIRNLLYRNLIDPYRREWADGNSR 130

Query: 124 IDTLSIARRKH----------PSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLL 167
            D L + R  H          PS  N      L  L     I  SH   H AL D +  
Sbjct: 131 WDVLDLIRAAHDLRPDSLAWPPSKDNGNPVFKLTELTTANNI--SHEHAHDALSDVYAT 187


>gi|228922245|ref|ZP_04085552.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228837300|gb|EEM82634.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 273

 Score = 78.7 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++ +   K    F   + P+ R  +    KL GIT + L     F  I  +F
Sbjct: 18  EIVDIGAVKIEIGTMKIIEEFSELVKPSAR-LTRHTTKLTGITKKDLMGVEKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIIDT---LSIARRKHPSSR 138
             F   +++ +++   + D  F++ +      +   ++    ID    +  A  +     
Sbjct: 77  IQFIG-EDSIFVSWGKE-DYRFLSHDCTLHGVECPSIEKESRIDLQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L    ++  +T   +  H AL D+   +++ +K
Sbjct: 135 PSLQFAVEQLALTWEGKQ-HRALADAENTANILLK 168


>gi|124441805|gb|ABN11517.1| ATP-dependent helicase [Bacillus subtilis subsp. subtilis str. 168]
 gi|124441807|gb|ABN11518.1| ATP-dependent helicase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|124441815|gb|ABN11522.1| ATP-dependent helicase [Bacillus subtilis]
 gi|124441817|gb|ABN11523.1| ATP-dependent helicase [Bacillus subtilis]
 gi|124441819|gb|ABN11524.1| ATP-dependent helicase [Bacillus subtilis]
 gi|124441821|gb|ABN11525.1| ATP-dependent helicase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|124441823|gb|ABN11526.1| ATP-dependent helicase [Bacillus subtilis]
 gi|124441825|gb|ABN11527.1| ATP-dependent helicase [Bacillus subtilis]
 gi|124441827|gb|ABN11528.1| ATP-dependent helicase [Bacillus subtilis]
 gi|124441829|gb|ABN11529.1| ATP-dependent helicase [Bacillus subtilis]
          Length = 604

 Score = 78.7 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 80  FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SR 138
             E +   +   A ++AHN  FD+GF+  EL +     L    ++DT+ ++R   P    
Sbjct: 1   AEEVFQLLD--GAYFVAHNIHFDLGFVKYELHKAGFQ-LPDCEVLDTVELSRIVFPGFEG 57

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             L  L +   + + H   H A  D+ +   ++++++    Q+ +
Sbjct: 58  YKLTELSEE--LQLRHDQPHRADSDAEVTGLIFLEILEKLRQLPY 100


>gi|139473144|ref|YP_001127859.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes str.
           Manfredo]
 gi|134271390|emb|CAM29610.1| putative exonuclease [Streptococcus pyogenes str. Manfredo]
          Length = 208

 Score = 78.7 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 23/182 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K+    I FD+E    ++ ND   II++ AV+  D+ K   +F  ++            
Sbjct: 14  MKHLDTYIAFDLE---FNTVNDVSHIIQVSAVKY-DHHKEVDSFDTYVY-TDVPLQSFIN 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT + +   P    + + F +F  E     I +NA+  D+  +       N   L 
Sbjct: 69  GLTGITSDKIAAAPKVEEVMAAFKNFVGE--LPLIGYNAQKSDLPILAE-----NGLDLR 121

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               ID    A  +  +  N      L ++    GI       H +L D+ + + +Y   
Sbjct: 122 DQYQIDLFDEAYDRRSADLNGIANLRLQTVATFLGIK---GRGHNSLEDARMTAAIYKSF 178

Query: 175 MV 176
           + 
Sbjct: 179 LE 180


>gi|50914940|ref|YP_060912.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes
           MGAS10394]
 gi|50904014|gb|AAT87729.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes
           MGAS10394]
          Length = 208

 Score = 78.7 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 23/182 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K+    I FD+E    ++ ND   II++ AV+  D+ K   +F  ++            
Sbjct: 14  MKHLDTYIAFDLE---FNTVNDVSHIIQVSAVKY-DHHKEVDSFDTYVY-TDVPLQSFIN 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT + +   P    + + F +F  E     I +NA+  D+  +       N   L 
Sbjct: 69  GLTGITSDKIAAAPKVEEVMAAFKNFVGE--LPLIGYNAQKSDLPILAE-----NGLDLR 121

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               ID    A  +  +  N      L ++    GI       H +L D+ + + +Y   
Sbjct: 122 DQYQIDLFDEAYDRRSADLNGIANLRLQTVATFLGIK---GRGHNSLEDARMTAAIYKSF 178

Query: 175 MV 176
           + 
Sbjct: 179 LE 180


>gi|239993165|ref|ZP_04713689.1| putative DNA polymerase, exonuclease activity [Alteromonas
           macleodii ATCC 27126]
          Length = 229

 Score = 78.7 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 13/171 (7%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+E T LD    +I  IG V       T  +    +           + +HG+T + L+
Sbjct: 36  VDLELTSLDPVTTQITSIGYVSGSAGKITLSSSGYHVINTSADLGQSPV-IHGLTLDILQ 94

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA- 130
                +   +             I HNA+ D+  +++  +R    P      +DTL +A 
Sbjct: 95  QGEGLADAINSLLPLLKTH--VLIFHNARLDLMALDSAFKRCGL-PQMEVLYLDTLQLAL 151

Query: 131 ------RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                  +  PS+   L    +R  + +    +H AL D+     ++   +
Sbjct: 152 YQLNKQHQVLPSNSATLTVCRQR--LDLPAFPEHNALDDALATMQLFYAQL 200


>gi|115352016|ref|YP_773855.1| exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria
           AMMD]
 gi|115282004|gb|ABI87521.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria
           AMMD]
          Length = 180

 Score = 78.7 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 75/180 (41%), Gaps = 17/180 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++ N+   +  D+ET+G       ++ IGA ++ D     +TF   L P  R   P+AL+
Sbjct: 1   MKSNREVFLSVDVETSGPIPGEFSLLTIGACDVFD---PQQTFSCELKPTTRNADPKALE 57

Query: 62  LHGITDEFL-KDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRINK 115
           + G++ + L +D         +F D+       +    ++  NA FD  F+N    R   
Sbjct: 58  VTGLSLDRLERDGLDPVVGMQKFRDWVISTAGPDATPVFVGFNAPFDWSFVNYYFHRYLG 117

Query: 116 DPLDPSRIID----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +       +D     +  AR     +R+   +      +  + +  H AL D+   ++++
Sbjct: 118 ENPFGFAALDIKSMYMGAARSSWAQTRSSQIAAA----LNPTLKGDHDALHDAQYQAELF 173


>gi|323497417|ref|ZP_08102435.1| exonuclease I [Vibrio sinaloensis DSM 21326]
 gi|323317500|gb|EGA70493.1| exonuclease I [Vibrio sinaloensis DSM 21326]
          Length = 474

 Score = 78.7 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M ++++     FD ET G     DR  +   V   +D++       ++  P       PE
Sbjct: 1   MQQEHQPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGDPLVIYCQPPSDYLPAPE 60

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +  + +  S     ++  +     N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQTAQAQGLSEPEFIAKIHEQLAMPNTINLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L K  GI   H + 
Sbjct: 121 PYAWSWQNGNSRWDLLDVMRACYALRPEGVEWPENDEGFISFKLEHLSKANGIE--HENA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIEMAKKIKAAQPKL 202


>gi|182683937|ref|YP_001835684.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CGSP14]
 gi|182629271|gb|ACB90219.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CGSP14]
          Length = 208

 Score = 78.7 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 60/184 (32%), Gaps = 25/184 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R      I FD+E    +       +I++ AV   D  + +  +  ++          
Sbjct: 13  MKRLED--YIAFDLE---FNQHEGQTHLIQVSAVRFRDGREID-AYDSYVH-TSVPLKSF 65

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDP 117
              L GIT E LKD P    +  EF +F        I +NA   D+  +           
Sbjct: 66  INGLTGITAETLKDAPPVEKVLEEFQEFVGS--LLMIGYNAAKSDLPILAEH-----GLD 118

Query: 118 LDPSRIIDTLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 +D    A        H  +   L ++    G        H +L D+ + + VY 
Sbjct: 119 YSQQYKVDLYDEAFERRSSDLHGIANLKLQTVASFLGF---QGQSHNSLEDARMTARVYE 175

Query: 173 KMMV 176
             + 
Sbjct: 176 SFLE 179


>gi|160689446|gb|ABX45581.1| polymerase C [Bacillus atrophaeus]
          Length = 259

 Score = 78.7 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           D+GF+N   +R+ K     + +IDTL + R  +P    + LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVVYKRLLKVEKAQNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+     + +KM+   ++  I +  + NE+
Sbjct: 59  IYDAEATGYLLLKMLKDAAEKDIQYHDQLNEN 90


>gi|148227894|ref|NP_001089039.1| ERI1 exoribonuclease 2 [Xenopus laevis]
 gi|82179168|sp|Q5HZL1|ERI2_XENLA RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease
           domain-containing protein 1
 gi|57032602|gb|AAH88972.1| Exod1 protein [Xenopus laevis]
          Length = 687

 Score = 78.7 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 66/196 (33%), Gaps = 28/196 (14%)

Query: 10  IVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           I+ D E+T           IIE    +  +   +    F  ++ P      S    +L G
Sbjct: 39  IIIDFESTCWKDGKHSTQEIIEFPAVLLNVSNGEIESEFHTYVQPQEHPILSDFCTELTG 98

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF----NEQNAEWIA----HNAK------------FDVG 104
           I  + + D        S+F  +      E+   ++     H+              +D+G
Sbjct: 99  INQQQVDDGVPLKICLSQFNSWIQKLQKEKGIAFVTAVPTHSTAEHKMCAFVTWSDWDLG 158

Query: 105 F--INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
              +    ++  K P   +  ID  +  +  +      LN   +  GI  S R  H  L 
Sbjct: 159 VCLLYECRRKQMKKPDILNSWIDLRATYKLFYNRRPKGLNGALQDLGIEFSGRE-HSGLD 217

Query: 163 DSHLLSDVYIKMMVGG 178
           DS   + +  +M+  G
Sbjct: 218 DSRNTAKLASRMICDG 233


>gi|297842185|ref|XP_002888974.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297334815|gb|EFH65233.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 506

 Score = 78.7 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 65/174 (37%), Gaps = 22/174 (12%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLH 63
              FD+ET             I+E GA+ +         ++   + P           L 
Sbjct: 13  IAFFDLETAVPTKSGQPF--AILEFGAILVCPRKLVELYSYSTLVQPTDLSL---ISTLT 67

Query: 64  ----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118
               GIT + +   P+FS I  E +D  + +   W  HN  +FD   I      I   P 
Sbjct: 68  KRRSGITRDGVLSAPTFSEIADEVYDILHGR--IWAGHNIKRFDCVRIRDAFAEIGLCPP 125

Query: 119 DPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +P   ID+LS+  +K    +    + SL   +G+       H +L D  +  +V
Sbjct: 126 EPKATIDSLSLLSQKFGKRAGDMKMASLATYFGL---GDQAHRSLDDVRMNLEV 176


>gi|15902940|ref|NP_358490.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae R6]
 gi|15458502|gb|AAK99700.1| DNA polymerase III, epsilon chain [Streptococcus pneumoniae R6]
          Length = 208

 Score = 78.7 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 60/184 (32%), Gaps = 25/184 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R      I FD+E    +       +I++ AV   D  + +  +  ++          
Sbjct: 13  MERLED--YIAFDLE---FNQHEGQTHLIQVSAVRFRDGREID-AYDSYVH-TSVPLKSF 65

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDP 117
              L GIT E LKD P    +  EF +F        I +NA   D+  +           
Sbjct: 66  INGLTGITAETLKDAPPVEKVLEEFQEFVGS--LLMIGYNAAKSDLPILAEH-----GLD 118

Query: 118 LDPSRIIDTLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 +D    A        H  +   L ++    G        H +L D+ + + VY 
Sbjct: 119 YSQQYKVDLYDEAFERRSSDLHGIANLKLQTVASFLGF---QGQSHNSLEDARMTARVYE 175

Query: 173 KMMV 176
             + 
Sbjct: 176 SFLE 179


>gi|152993185|ref|YP_001358906.1| exonuclease [Sulfurovum sp. NBC37-1]
 gi|151425046|dbj|BAF72549.1| exonuclease [Sulfurovum sp. NBC37-1]
          Length = 263

 Score = 78.7 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 27/185 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+E+TG+D KNDR+I++  +++         F    C    + +   + +H IT+  L
Sbjct: 7   FVDVESTGVDLKNDRLIQLAFLKVQGDKI--EAFNDL-CYTDIEMNDTVVAIHNITNAML 63

Query: 71  KDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +DK  P  +  F E     +  N  +IAH  + DV  +  E      + +   + +DT  
Sbjct: 64  EDKYWPYETDAFIELEKGNSPAN-YFIAHGNELDVAMLEHE------ELILEMQKVDTDK 116

Query: 129 IARRKHPS-SRNDLNSLCKRYG-----------ITISHRSKHGALLDS---HLLSDVYIK 173
            AR          L  L  RY            I +S+   H AL D+   ++L +  ++
Sbjct: 117 CARLLLKEAGSYKLEDLITRYKLTQKAEAIAKQIGLSNLDAHDALSDALWHYVLFEELLE 176

Query: 174 MMVGG 178
            + GG
Sbjct: 177 RVEGG 181


>gi|83645626|ref|YP_434061.1| putative exonuclease [Hahella chejuensis KCTC 2396]
 gi|83633669|gb|ABC29636.1| putative exonuclease [Hahella chejuensis KCTC 2396]
          Length = 176

 Score = 78.7 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 63/182 (34%), Gaps = 16/182 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +  D ETT LD     ++EI           N      + P G   S  A  +H I+
Sbjct: 1   MDPLFLDTETTNLD-DTAEVVEIAVTNRHGTKLLN----TLVKPQG-PMSAAAQNVHQIS 54

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  LK  PS+   +   +    ++    I  NA FDV  +          P+ P   +  
Sbjct: 55  ELELKGAPSWPITYPRVYKLLYKR--PVIIFNADFDVRILRQTCNAWALPPI-PFTPLCA 111

Query: 127 LSIARRKHPS----SRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + +    H       +    S  +     G   +  S H A  D+ + S++   M  G  
Sbjct: 112 MRLYAEFHGQWSEKGQFKYQSQARALEQIGHPAAATSLHRAAYDAQMTSEIIYTMATGIK 171

Query: 180 QI 181
            +
Sbjct: 172 PL 173


>gi|160689340|gb|ABX45528.1| polymerase C [Bacillus mojavensis]
          Length = 259

 Score = 78.7 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           D+GF+N   +++ +     + +IDTL + R  +P    + LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAFKKLLQVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFNIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+   + + +KM+   ++  I +  + NE+
Sbjct: 59  IYDTEATAYLLMKMLEDAAEKGIQYHDQLNEN 90


>gi|209695175|ref|YP_002263104.1| exonuclease I [Aliivibrio salmonicida LFI1238]
 gi|208009127|emb|CAQ79365.1| exodeoxyribonuclease I [Aliivibrio salmonicida LFI1238]
          Length = 474

 Score = 78.3 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 61/193 (31%), Gaps = 25/193 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M + N      FD ET G     DR  +   V    D++       ++  P       PE
Sbjct: 1   MPQDNAPSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPIDYLPSPE 60

Query: 59  ALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQ 111
           A  + GIT +  +    S     ++  +  ++ N   + +N  +FD             +
Sbjct: 61  ACLITGITPQMAVSKGLSEPEFIAQIHNELSKPNTCSLGYNNIRFDDEVSRYTLYRNFFE 120

Query: 112 RINKDPLDPSRIIDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSK 157
                  + +   D L + R  +                    L  L +  GI   H + 
Sbjct: 121 PYGWSWQNGNSRWDLLDVMRAVYALRPEGIEWPKDEEGKPSFRLEKLSQANGIE--HENA 178

Query: 158 HGALLDSHLLSDV 170
           H A+ D     ++
Sbjct: 179 HDAMADVIATIEL 191


>gi|160689452|gb|ABX45584.1| polymerase C [Bacillus atrophaeus]
          Length = 259

 Score = 78.3 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           D+GF+N   +R+ K     + +IDTL + R  +P    + LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKRLLKVEKAQNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+     + +KM+   ++  I +  + NE+
Sbjct: 59  IYDAEATGYLLLKMLKDAAEKDIQYHDQLNEN 90


>gi|228986624|ref|ZP_04146755.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228773109|gb|EEM21544.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 273

 Score = 78.3 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++     K    F   + P G + +    KL GIT + L     F  I  +F
Sbjct: 18  EIVDIGAVKIEASTMKVIGEFSELVKP-GARLTRHTTKLTGITKKDLIGVEKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRIIDT---LSIARRKHPSSR 138
             F   +N+ ++    + D  F++ +          +D  R ID    +  A  +     
Sbjct: 77  VQFIG-ENSIFVTWGKE-DYRFLSHDCTLHSVECPRMDKERRIDLQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L S  ++ G+T   +  H AL D+   +++ +K
Sbjct: 135 PSLQSAVEQLGLTWEGKQ-HRALADAENTANILLK 168


>gi|228959723|ref|ZP_04121398.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229110959|ref|ZP_04240520.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock1-15]
 gi|228672540|gb|EEL27823.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock1-15]
 gi|228799853|gb|EEM46795.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 273

 Score = 78.3 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++ +   K    F   + P+ R  +    KL GIT + L     F  I  +F
Sbjct: 18  EIVDIGAVKIEIGTMKIIEEFSELVKPSAR-LTRHTTKLTGITKKDLMGVEKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIIDT---LSIARRKHPSSR 138
             F   + + +++   + D  F++ +      +   ++    ID    +  A  +     
Sbjct: 77  IQFIG-EGSIFVSWGKE-DYRFLSHDCTLYGVECPSIEKENRIDLQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L+   ++  +T   +  H AL D+   +++ +K
Sbjct: 135 PSLHFAVEQLALTWEGKQ-HRALADAENTANILLK 168


>gi|261880650|ref|ZP_06007077.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332603|gb|EFA43389.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 907

 Score = 78.3 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 91/264 (34%), Gaps = 45/264 (17%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N+   +VFD ETTGL+  +D +I+I A  + +  KT   F V +   GR+          
Sbjct: 523 NEQEIVVFDTETTGLNVFDDDVIQIAAERIRNG-KTVDKFSVHIE-TGREIP-------- 572

Query: 65  ITDEFLKDKP-------------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
              + L D P                     F DF        I HNA++D   ++  L+
Sbjct: 573 ---KMLGDIPNPIIGEREHQTIRPHEEGLQMFLDFVGSD--VLIGHNAEYDYRIMDYNLR 627

Query: 112 RI--NKDPLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           R   + D        +D+L I R   P  +           + +   + H A  D +   
Sbjct: 628 RYLPHVDWQKEHPVCLDSLKIIRLLRPELKAF-KLKLLLQELHLEGTNSHLADDDVNATV 686

Query: 169 DVY-------IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
            +         +++    +   G KT  +R  +  ++    +    R++        EE 
Sbjct: 687 SLLRYCNTRAQELLNSQKEF-LGRKTTRERI-RLLRQNYHELYATGRERLYSREQNTEEP 744

Query: 222 D---EHDKTIQTLGKNAIWDRYIS 242
               E  +    +  N  W R I 
Sbjct: 745 AVVTEAKRFYAQMRSNG-WMREIP 767


>gi|156405487|ref|XP_001640763.1| predicted protein [Nematostella vectensis]
 gi|156227899|gb|EDO48700.1| predicted protein [Nematostella vectensis]
          Length = 277

 Score = 78.3 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 15/188 (7%)

Query: 9   KIVFDIETTGL--DSKN--DRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKL 62
             V D E T    + +     IIE    +      +    FQ +  P  +   +    +L
Sbjct: 88  YCVIDFEATCEKENPEGYQHEIIEFPAVLVNAKTLEIEGEFQQYCKPLLKPRLTKFCQEL 147

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-------VGFINAELQRINK 115
            GI+ E +    +F  +   F  +  E+      H              F+  + +  N 
Sbjct: 148 TGISQETVDKSDNFPQVLDNFHIWLKERG-IGTTHKFAVVTDGPWDIQRFLVTQCEICNI 206

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +    SR    L    R     +  L+ + +  G+    R  H  L DS  ++ + IKM+
Sbjct: 207 NLPKWSRKYINLRKHYRNFYKMKCKLSEMLENLGLEFEGR-PHSGLDDSRNIARILIKML 265

Query: 176 VGGSQINF 183
             G  ++F
Sbjct: 266 KDGGDLSF 273


>gi|54308882|ref|YP_129902.1| exonuclease I [Photobacterium profundum SS9]
 gi|46913312|emb|CAG20100.1| putative exonuclease I [Photobacterium profundum SS9]
          Length = 474

 Score = 78.3 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 74/219 (33%), Gaps = 26/219 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSPE 58
           M + N+      D ET G     DR  +   V   +D++   +   ++  P      SPE
Sbjct: 1   MKKTNEPTLYWIDYETFGATPATDRACQFAGVRTDMDFNIIGKPLVIYCKPPVDYLPSPE 60

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +  ++K        ++     ++ N   I +N  +FD       L R   D
Sbjct: 61  ACLITGITPQEAQEKGLPEPEFIAQIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFYD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSK 157
           P              +D +       P   N            L  L    GI   H + 
Sbjct: 121 PYAWGWQNGNSRWDLLDIMRTCYALRPEGVNWPNNDEGLPSFKLEHLSVANGIE--HANA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI-NFGFKTNEDRFFKE 195
           H A+ D +   ++   +     ++ N+ F     R  +E
Sbjct: 179 HDAMADVYATIELAKILKTNQPKLFNYLFDLRHKRKLQE 217


>gi|229191624|ref|ZP_04318603.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus ATCC
           10876]
 gi|228591786|gb|EEK49626.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus ATCC
           10876]
          Length = 273

 Score = 78.3 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++ +   K    F   + P+ R  +    KL GIT + L     F  I  +F
Sbjct: 18  EIVDIGAVKIEIGTMKIIEEFSELVKPSAR-LTRHTTKLTGITKKDLMGVEKFPRIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIIDT---LSIARRKHPSSR 138
             F   + + +++   + D  F++ +      +   ++    ID    +  A  +     
Sbjct: 77  IQFIG-EGSIFVSWGKE-DYRFLSHDCTLYGVECPSIEKENRIDLQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L    ++  +T   +  H AL D+   +++ +K
Sbjct: 135 PSLQFAVEQLALTWEGKQ-HRALADAENTANILLK 168


>gi|86148888|ref|ZP_01067137.1| ribonuclease T [Vibrio sp. MED222]
 gi|85833322|gb|EAQ51531.1| ribonuclease T [Vibrio sp. MED222]
          Length = 119

 Score = 78.3 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 11/113 (9%)

Query: 79  IFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQRINKD--PLDPSRIIDTLSI 129
              E +    ++        A  +AHNA FD+ F+NA  +R      P  P    DT ++
Sbjct: 1   ALKEIYKLVRKEQKASDCSRAIMVAHNATFDLNFVNAASERCKLKRVPFHPFATFDTAAL 60

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           +   +   +  L   C+  G+   ++  H AL D+   ++++  ++     + 
Sbjct: 61  SGLAY--GQTVLAKACRTAGMEFDNKEAHSALYDTQKTTELFCGIVNKWKALG 111


>gi|254458573|ref|ZP_05071998.1| exonuclease superfamily protein [Campylobacterales bacterium GD 1]
 gi|207084881|gb|EDZ62168.1| exonuclease superfamily protein [Campylobacterales bacterium GD 1]
          Length = 175

 Score = 78.3 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 28/181 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           I+ D ET    +    +IE+ A  VE ++       +F  +   +  + +P AL +H ++
Sbjct: 2   IILDFETN--SANIHDVIEVAAFRVEKVNDEYVVKDSFHRYYL-SEYEVNPHALAVHKLS 58

Query: 67  D---EFLKDKPSFSSIFS---EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
               E L+ K ++   F    EF +F  +     +AHN  F++  I           L  
Sbjct: 59  PDRLERLRAKATYEEHFEDDTEFVEFCKDA-KTLVAHNISFELRHI--------GSLLSF 109

Query: 121 SRIIDTLSIARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +   T+   ++       +       L   C  Y I       H A+ D     ++  K
Sbjct: 110 EKHFCTMKENKKTVDARNIRGNIKNPKLIETCAYYNIDFDDEQYHSAIYDVTKTLEILNK 169

Query: 174 M 174
           M
Sbjct: 170 M 170


>gi|322390290|ref|ZP_08063819.1| exonuclease [Streptococcus parasanguinis ATCC 903]
 gi|321143021|gb|EFX38470.1| exonuclease [Streptococcus parasanguinis ATCC 903]
          Length = 197

 Score = 78.3 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 23/176 (13%)

Query: 9   KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            I FD+E    +       II++ AV    + K    +  ++    +        L GIT
Sbjct: 7   YIAFDLE---FNQYEGAYQIIQVSAVHFT-HGKEVDHYDSYVY-TDKPLKSFINGLTGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIID 125
            + +++ P    + SEF  F  ++    I +N  K D+  +       N   L+    +D
Sbjct: 62  QDKIQNAPQLEQVLSEFKAFVGDR--PLIGYNAKKSDLPILLE-----NGLDLEDQYAVD 114

Query: 126 TLSIARRKHPSSRND-----LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
               A  + PS  +      L+++ +  G+       H +L D+ + + VY + + 
Sbjct: 115 VFDEAFERRPSDLHGIKNLQLHTVAEFLGVA---GKSHDSLEDARMTALVYEQFLE 167


>gi|304437456|ref|ZP_07397414.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369506|gb|EFM23173.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 219

 Score = 78.3 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 30/188 (15%)

Query: 7   MRKIVFDIETTGLDSK-----------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M+ IV D+E   ++             N  IIEIGAV L +       FQ ++CP     
Sbjct: 1   MKHIVVDLE---MNPVGKEYRDVRRKLNGEIIEIGAVRLNEDFVQEDEFQCYVCPEYGMV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
                +L GIT E +   P+F+  F  F  +  E   +  + +   D+  +  E  R+  
Sbjct: 58  KKHITELTGITQEKVAGHPAFADSFHAFVVWIGEAETKIYSWSMS-DIKQLRKEC-RLKL 115

Query: 116 DPLD----PSRIIDTLSIARRKHPSS-----RNDLNSLCKRYGITISHRSKHGALLDSHL 166
              D     +R +D       +         ++ L ++ +R+       S+H AL D+  
Sbjct: 116 PDFDVTWLDARWVDLQQEFDDRLGLHNSLALKHALGAMGRRF-----EGSQHSALADAVN 170

Query: 167 LSDVYIKM 174
            S V   M
Sbjct: 171 TSAVLALM 178


>gi|294791066|ref|ZP_06756224.1| DNA polymerase III, epsilon subunit [Scardovia inopinata F0304]
 gi|294458963|gb|EFG27316.1| DNA polymerase III, epsilon subunit [Scardovia inopinata F0304]
          Length = 282

 Score = 78.3 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 75/203 (36%), Gaps = 46/203 (22%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG  +  D I+    V           + Q ++   G   +P A +++G TD++L
Sbjct: 29  FDTETTGTRAGKDAIVSASLVLRNPALGFNGDSTQDWIINPGIPMNPRASQVNGFTDDYL 88

Query: 71  KD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS---- 121
           ++       S + I +        +N   +A+NA FD+  +N +LQ++ ++ L       
Sbjct: 89  REHGANQADSIALIANSIIKA-QIRNIPLLAYNAPFDITMLNGDLQKLGQETLAGQLLVA 147

Query: 122 ---------------------------------RIIDTLSIARRK-HPSSRNDLNSLCKR 147
                                             I+D L I R   H S +  L      
Sbjct: 148 DQTGNDSSWSSKSDSESNSNSEDEQEKNKKRELLIVDPLVIDRALSHRSGKRTLTDTTYY 207

Query: 148 YGITISHRSKHGALLDSHLLSDV 170
           YG+   H S H A  D+    D+
Sbjct: 208 YGVQ-PHGSFHDATADTIAAVDL 229


>gi|94311778|ref|YP_584988.1| exonuclease [Cupriavidus metallidurans CH34]
 gi|93355630|gb|ABF09719.1| 3'-5' Exonuclease [Cupriavidus metallidurans CH34]
          Length = 194

 Score = 78.3 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 67/192 (34%), Gaps = 22/192 (11%)

Query: 10  IVFDIETT-------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALK 61
           +V D+E T       G + +     EIGAV +         FQ F+ P      +     
Sbjct: 6   LVVDLEATCSEDMAAGWEMETA---EIGAVWVRGNGTVLDHFQSFVRPVVNPQLTAFFTN 62

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINK-DP 117
           L GI+   + D P F+    +   F        + W++    +D   +  +  R    +P
Sbjct: 63  LTGISQSDVDDAPLFTVAAEQLRQFVERYQMPGSIWVSW-GAWDARQLLRDSARYRIAEP 121

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-----I 172
           +           A+ +       +   C+  G TI+  + H AL D+  +  +       
Sbjct: 122 IALPHQNGKRLFAKAQKIGKEVGMAKACQLAGQTIAG-THHRALDDAMSIVGLLPFVFGE 180

Query: 173 KMMVGGSQINFG 184
           K++    Q N  
Sbjct: 181 KLLRAQHQANHS 192


>gi|229047203|ref|ZP_04192817.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH676]
 gi|228724164|gb|EEL75507.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH676]
          Length = 205

 Score = 78.3 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++ +   K    F   + P+ R  +    KL GIT + L     F  I  +F
Sbjct: 18  EIVDIGAVKIEIGTMKIIEEFSELVKPSAR-LTRHTTKLTGITKKDLMGVEKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIIDT---LSIARRKHPSSR 138
             F   + + +++   + D  F++ +      +   ++    ID    +  A  +     
Sbjct: 77  IQFIG-EGSIFVSWGKE-DYRFLSHDCTLYGVECPSIEKENRIDLQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L+   ++  +T   +  H AL D+   +++ +K
Sbjct: 135 PSLHFAVEQLALTWEGKQ-HRALADAENTANILLK 168


>gi|253580938|ref|ZP_04858200.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847780|gb|EES75748.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 319

 Score = 78.3 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 16/180 (8%)

Query: 7   MRKIVFDIE----TTGLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  IVFD+E     +G  ++NDR    IIEIGAV++    +    F   + P   K   +
Sbjct: 1   MNYIVFDLEWNQNPSGKKTRNDRLPFEIIEIGAVKVNSKKEITDHFHRLIKPQVYKWIHD 60

Query: 59  AL-KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           ++ ++  +  + L     F     EF D+  E    +   N   DV  +   ++      
Sbjct: 61  SIHEVIHVDYKDLMKGVPFEQAVREFIDWCGEDWYFFTWGNQ--DVMELQRNMKFYGLLD 118

Query: 118 LDPSR--IIDTLSIARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L P      D   +    +    +   L        I  S R  H AL D+   + V  K
Sbjct: 119 LLPGPVTYYDVQKLYSISYDDGTHRCALEHAIDELKIEKS-RGFHRALADAWYTAKVLEK 177


>gi|302877146|ref|YP_003845779.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|307687841|ref|ZP_07630287.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|302580003|gb|ADL54015.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
          Length = 205

 Score = 78.3 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 64/197 (32%), Gaps = 37/197 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           M  I FD ETTGL      I ++  ++            + F   +        P A  +
Sbjct: 1   MNMIFFDTETTGLKPGQ--ICQLSYIKVTTDTKPQKVEGKNFFFSV----EDIEPSAEAI 54

Query: 63  HGITDEFL---KDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           HG + E L    D   FS ++ EF  DF +      I +N  FD+ F+ AE  R+  + +
Sbjct: 55  HGFSVEDLIELSDGCEFSDLYEEFINDFVDCD--LVIGYNVNFDIKFLVAEFYRLGINYI 112

Query: 119 DPSRIIDTLSIARRKHPSSRN------DLNSLCKRYGITIS------------HRSKHGA 160
                              +N       L  + +   I  +                H A
Sbjct: 113 PKMDFCAMQYYKEICAIRGKNGDIKNPKLAEVVEFLNIDETFMYEKTRELFGGSGRFHDA 172

Query: 161 LLDSHLLSDVYIKMMVG 177
             D+      Y+ +  G
Sbjct: 173 RFDTTAT---YLIITEG 186


>gi|282864201|ref|ZP_06273257.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE]
 gi|282560688|gb|EFB66234.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE]
          Length = 241

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 13/166 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI         F  ETTG D + DRI+    V         R  +  + P G      A 
Sbjct: 1   MIHWFDGPLAAFGTETTGADVEEDRIVSAALVIQDTTGGRFRVTRWLVSP-GIPVPAGAT 59

Query: 61  KLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRI--- 113
           ++HG+TD+ L ++    + +  E      EQ A     +  +A F +  ++ EL+R    
Sbjct: 60  EIHGLTDDHLQRNGRWPAPVMEELARALAEQCAVRRPVVVMDAPFGLTLLDRELRRHRAS 119

Query: 114 ---NKDPLDPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISH 154
                    P  ++D   L     ++   R  L+ L + YG+ +  
Sbjct: 120 SLAGYLGDQPLCVLDPRVLDGHLDRYRKGRRALDDLLELYGVELDG 165


>gi|187933667|ref|YP_001886759.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           B str. Eklund 17B]
 gi|187721820|gb|ACD23041.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           B str. Eklund 17B]
          Length = 204

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 74/201 (36%), Gaps = 39/201 (19%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPNGRKNSPEALKL 62
           M+ + FD ETT +   +  I ++  + +   SK    T + F   +     + +P A ++
Sbjct: 1   MKLLFFDTETTSIKPGS--ICQLSYITVDASSKPQITTGKNFFFTVD----EMNPSAQEI 54

Query: 63  HGITDE---FLKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           HG + E    L +   F  +  EF+ DF        I HN  FD+ F+  EL  + +D L
Sbjct: 55  HGFSLEKLYELSEGQYFEDLVPEFFKDFIEAD--FLIGHNVNFDIRFLKHELSLLGEDFL 112

Query: 119 DPSRIIDTLSIARRKHPSSR-------NDLNSLCKRYGIT------ISHR------SKHG 159
                  T+   +      +         L  +    GI        S R      + H 
Sbjct: 113 PKHS-FCTMIYYKDICKIPKANGEVKNPKLEEVVTFLGINKDQITKTSDRLFQGSSNYHD 171

Query: 160 ALLDSHLLSDVYIKMMVGGSQ 180
           A  D+      Y+ +  G  +
Sbjct: 172 ARFDTAAT---YLAVTEGLKK 189


>gi|307721509|ref|YP_003892649.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979602|gb|ADN09637.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
          Length = 233

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 96/240 (40%), Gaps = 39/240 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  DIETTGL++ +D +  I  +        ++     L   G+K  P A  +H IT+E 
Sbjct: 3   IFTDIETTGLEA-DDVMCGIALLSE------DKVMYELLN-EGKKIPPLASSIHHITNEM 54

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           ++DK  F  I SE  DF  + N      IAHN KFD+  + A       D      IIDT
Sbjct: 55  IQDKKLF--IQSEVHDFLEQNNNPKNTLIAHNIKFDLEKLAAAGLHWQGD------IIDT 106

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGI---TISHRSKHG---------ALLDSHLLSDVYIK 173
           L + +          L  L     +       + K+G         AL D  +   ++  
Sbjct: 107 LKVTKHLIKECELFSLEFLRYELKLYMQENEIKQKYGIKDALCTDKALSDVLVTKLLFEY 166

Query: 174 MMVGG-----SQINFGFKTNEDRFFKEEK-KTVPNISLLKRDKPLFTRITKEELDEHDKT 227
           ++         +++F     E   F + K K +  I L  R   +   ++ +ELDE  K 
Sbjct: 167 LLEYATVKEMKELSFQNVLLEKFTFGKYKGKYIEEIVLNDRSY-IAWMLSLKELDEDLKY 225


>gi|168485945|ref|ZP_02710453.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CDC1087-00]
 gi|183571068|gb|EDT91596.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CDC1087-00]
          Length = 196

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 60/184 (32%), Gaps = 25/184 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R      I FD+E    +       +I++ AV   D  + +  +  ++          
Sbjct: 1   MERLED--YIAFDLE---FNQHEGQTHLIQVSAVRFRDGREID-AYDSYVH-TSVSLKSF 53

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDP 117
              L GIT E LKD P    +  EF +F        I +NA   D+  +           
Sbjct: 54  INGLTGITAETLKDAPPVEKVLEEFQEFVGS--LLMIGYNAAKSDLPILAEH-----GLD 106

Query: 118 LDPSRIIDTLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 +D    A        H  +   L ++    G        H +L D+ + + VY 
Sbjct: 107 YSQQYKVDLYDEAFERRSSDLHGIANLKLQTVASFLGF---QGQSHNSLEDARMTARVYE 163

Query: 173 KMMV 176
             + 
Sbjct: 164 SFLE 167


>gi|323491335|ref|ZP_08096520.1| exonuclease I [Vibrio brasiliensis LMG 20546]
 gi|323314461|gb|EGA67540.1| exonuclease I [Vibrio brasiliensis LMG 20546]
          Length = 474

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M ++++     FD ET G     DR  +   V   +D++       ++  P       PE
Sbjct: 1   MQQEHQPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPAPE 60

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +  + K  S     ++  +     N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQTAESKGLSEPEFIAKIHEQLAMPNTISLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L SL    GI   H + 
Sbjct: 121 PYAWSWQNGNSRWDLLDVMRACYALRPEGIEWPENEEGFISFKLESLSVANGIE--HENA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIEMAKKVKAAQPKL 202


>gi|149922094|ref|ZP_01910534.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Plesiocystis pacifica SIR-1]
 gi|149817031|gb|EDM76513.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Plesiocystis pacifica SIR-1]
          Length = 213

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 75/204 (36%), Gaps = 23/204 (11%)

Query: 1   MIRKNKMRKIVFDIETT----GLDSKND-RIIEIGAVELLDYSK--TNRTFQVFLCP-NG 52
           M  ++    +V D+E T    G   + +  IIEIGAV L+D       R FQ F+ P   
Sbjct: 1   MTTRD---YLVIDLEATCDDAGAVPRREMEIIEIGAV-LVDGQTLCPKREFQRFVRPLRH 56

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFIN 107
           R  +P   +L  IT   +    +F  + +E   F  +         W A+    D G   
Sbjct: 57  RTLTPFCRQLTSITQAEVDGAATFPEVIAELRAFMYDDGGRPRFCSWGAY----DRGQFE 112

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            + +           +      +R      R  +    +R G+ +   + H  + D+  +
Sbjct: 113 QDARFHGVALPFTDHLNLKAGFSRVLGTRKRYGMAGALRRLGLPLEG-THHRGIDDARNI 171

Query: 168 SDVYIKMMVGGSQINFGFKTNEDR 191
           + + +  +VG   I    +    R
Sbjct: 172 AKI-LPFIVGAQPIPAPGEAPGQR 194


>gi|148992870|ref|ZP_01822489.1| exonuclease [Streptococcus pneumoniae SP9-BS68]
 gi|168490187|ref|ZP_02714386.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP195]
 gi|147928322|gb|EDK79338.1| exonuclease [Streptococcus pneumoniae SP9-BS68]
 gi|183571454|gb|EDT91982.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP195]
 gi|332073326|gb|EGI83805.1| exonuclease family protein [Streptococcus pneumoniae GA17570]
          Length = 196

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 25/184 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R      I FD+E    +       +I+  AV   D  + +  +  ++          
Sbjct: 1   MERLED--YIAFDLE---FNQHEGQTHLIQASAVRFRDGREID-AYDSYVH-TSVPLKSF 53

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDP 117
              L GIT E LKD P    +  EF +F        I +NA   D+  +           
Sbjct: 54  INGLTGITAETLKDAPPVEKVLEEFQEFVGS--LLMIGYNAAKSDLPILAEH-----GLD 106

Query: 118 LDPSRIIDTLSIAR-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 +D    A        H  +   L ++    G        H +L D+ + + VY 
Sbjct: 107 YSQQYKVDLYDEAFERRSSDLHGIANLKLQTVASFLGF---QGQSHNSLEDARMTARVYE 163

Query: 173 KMMV 176
             + 
Sbjct: 164 SFLE 167


>gi|160689346|gb|ABX45531.1| polymerase C [Bacillus vallismortis]
          Length = 259

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           D+GF+N   +R+ +     + +IDTL + R  +P    + LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKRLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+   + + +KM+   ++  I +  + NE+
Sbjct: 59  IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90


>gi|125531875|gb|EAY78440.1| hypothetical protein OsI_33531 [Oryza sativa Indica Group]
          Length = 482

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 78/222 (35%), Gaps = 28/222 (12%)

Query: 9   KIVFDIET-----TGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGR-KNSPEALK 61
              FD+ET      G   +   ++E GA+ +         ++   + P      S  +++
Sbjct: 29  IAFFDVETSVPQRAG---QGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVR 85

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            +GIT + +   P+F  +    +   +                 I      I + P +P 
Sbjct: 86  CNGITRDAVAAAPAFRDVADAVYSVLHG-----------LTRTRIREAFAEIGRPPPEPK 134

Query: 122 RIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVG 177
            +IDTL +  +K    +    + SL   +G+    R  H +L D  +  +V  Y   ++ 
Sbjct: 135 GMIDTLPLLTQKFGRRAGDMKMASLANYFGL---GRQSHRSLDDVRMNLEVLKYCATVLF 191

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
                 G  T E+   +   ++  N +          R + +
Sbjct: 192 LEASLPGVLTVENLVERAITRSQANGAASPEVPKPVARSSPD 233


>gi|93007037|ref|YP_581474.1| exonuclease [Psychrobacter cryohalolentis K5]
 gi|92394715|gb|ABE75990.1| Exodeoxyribonuclease X [Psychrobacter cryohalolentis K5]
          Length = 242

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 31/170 (18%)

Query: 10  IVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           ++ D ET   D   D R I++  +       T   +  +   +GR  SP  +++HGITD+
Sbjct: 12  LIIDTET---DQGRDPRPIQVATI----NVATGFEWMKYFN-SGRSISPVVIRVHGITDD 63

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     F     +F     E     I HN +FD   I +   ++          I T+ 
Sbjct: 64  DVAGLERFE--LEQF-----ELPEYLIGHNVRFDWRVIGSPSAKL----------ICTVR 106

Query: 129 IARRKHPSSR-NDLNSLCKR-YGITISHR---SKHGALLDSHLLSDVYIK 173
           +AR   P       +   ++  G   + R   + H AL D+ +   +Y  
Sbjct: 107 LARVAFPEWSAYGQSKCIEQLLGKGEASRMTIAAHDALGDARMCYLLYQA 156


>gi|239927654|ref|ZP_04684607.1| exonuclease RNase T and DNA polymerase III [Streptomyces ghanaensis
           ATCC 14672]
 gi|291435992|ref|ZP_06575382.1| exonuclease RNase T and DNA polymerase III [Streptomyces ghanaensis
           ATCC 14672]
 gi|291338887|gb|EFE65843.1| exonuclease RNase T and DNA polymerase III [Streptomyces ghanaensis
           ATCC 14672]
          Length = 204

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 64/196 (32%), Gaps = 31/196 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI---- 65
              D ETTGLD       EI  +      +T++    +L P+     P+AL+++      
Sbjct: 14  AFVDTETTGLDPFQHDAWEIAVILRKPG-ETDQESVFYLEPDLINADPKALEINRYHERV 72

Query: 66  -TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RI 123
            T+++   KP    +  + +   +      I  N  FD   I     R    P     R 
Sbjct: 73  KTEDWTWGKP--QDVARDLYRLLD--GTVLIGSNPPFDADMIANIFGRYYWHPKPWHYRT 128

Query: 124 IDTLSIAR-------------------RKHPSSRNDLNSLCKRYGITISHRS-KHGALLD 163
           ID   +A                      +P        L +  G+    +   H AL D
Sbjct: 129 IDIAILAAGYRHGQAASGAYGGDFLFPDDYPQLPYSSYGLSRAVGVEPPAKDVAHTALGD 188

Query: 164 SHLLSDVYIKMMVGGS 179
           +    DV+  +  G  
Sbjct: 189 ARWARDVFDAVTGGAK 204


>gi|124441809|gb|ABN11519.1| ATP-dependent helicase [Bacillus subtilis]
 gi|124441811|gb|ABN11520.1| ATP-dependent helicase [Bacillus subtilis]
 gi|124441813|gb|ABN11521.1| ATP-dependent helicase [Bacillus subtilis]
          Length = 604

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 80  FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SR 138
             E +   +   A ++AHN  FD+GF+  EL +     L    ++DT+ ++R   P    
Sbjct: 1   AEEVFHLLD--GAYFVAHNIHFDLGFVKYELHKAGFH-LPDCEVLDTVELSRIVFPGFEG 57

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             L  L +   + + H   H A  D+ +   ++++++    Q+ +
Sbjct: 58  YKLTELSEE--LQLRHDQPHRADSDAEVTGLIFLEILEKLRQLPY 100


>gi|194366373|ref|YP_002028983.1| exonuclease I [Stenotrophomonas maltophilia R551-3]
 gi|194349177|gb|ACF52300.1| Exodeoxyribonuclease I [Stenotrophomonas maltophilia R551-3]
          Length = 479

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 67/189 (35%), Gaps = 28/189 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  A+    D ++ +     F+ P +    SP A  + GIT
Sbjct: 5   FLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLVTGIT 64

Query: 67  D-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI- 123
             + L +  S +  F    +  +      + +N  +FD  F+   L R   DP +     
Sbjct: 65  PQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYEREWRN 124

Query: 124 -------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                  +D L + R   P                L  L +   +       H AL D  
Sbjct: 125 GNSRWDLLDMLRLMRAMRPEGIQWPLREDGATSFKLEHLAEANNVR--EGDAHEALSDVR 182

Query: 166 LL---SDVY 171
                + ++
Sbjct: 183 ATIGMARLF 191


>gi|27383438|ref|NP_774968.1| hypothetical protein pCTX-M3_009 [Citrobacter freundii]
 gi|27261291|gb|AAN87632.1| putative protein [Citrobacter freundii]
          Length = 283

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 55/173 (31%), Gaps = 24/173 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL       +EIG  +          F+  L P       +A  +HGI + 
Sbjct: 104 PLFLDTETTGL-GNTAEALEIGLTDAAGRVI----FETRLKPTVA-IEAQAAAVHGIDEP 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   PS+  +  +      ++    I  NA FD   +         DP D    + T+ 
Sbjct: 158 ALSGAPSWPDVALQLRHAIGDR--PVIIFNAPFDTRILKQTGPPHMADPADWLGEL-TVY 214

Query: 129 IARRKHPSSRNDLNSLCKRYGITIS-----------HRSKHGALLDSHLLSDV 170
            A                RYG                   H A+ D+ + + V
Sbjct: 215 CAMELAAGYFG----ATNRYGTISLASAASQAALAWEGEAHSAIADARMTAGV 263


>gi|332304985|ref|YP_004432836.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172314|gb|AEE21568.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 224

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 13/188 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   ++  +  D+E T LD    RI+ IG VE        ++    +       +   + 
Sbjct: 22  MPLAEIPFLCIDLELTSLDLSATRILSIGWVEGKGKQIELQSCFYQVVSTTASLNQSPV- 80

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG+T E +               + +     W+ H    D+  +N   +++N  PL   
Sbjct: 81  IHGLTAEDIAQGQPVRVALEALVKYASSH--VWVFHCTGLDMTVLNGVFKKLNI-PLPTV 137

Query: 122 RIIDTLSIA-----RRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DTL        +   P   N   L     RY +       H AL D+    ++    
Sbjct: 138 VTLDTLRFGLYQLTKNLRPPPPNAVVLPVCRARYNLPAV--PAHNALDDAMATLELLFAQ 195

Query: 175 MVGGSQIN 182
           +   +  N
Sbjct: 196 IQKFAPKN 203


>gi|323128029|gb|ADX25326.1| DNA polymerase III subunit epsilon [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 195

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 23/182 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K+    I FD+E    ++ ND   +I++ AV+  D+ K   +F  ++            
Sbjct: 1   MKHLDTYIAFDLE---FNTVNDVSHVIQVSAVKY-DHHKEVDSFDTYVY-TDVPLQSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT + +   P    + + F DF  E     I +NA+  D+  +       N   L 
Sbjct: 56  GLTGITSDKIAAAPKVEEVITAFKDFVGE--LPLIGYNAQKSDLPILAE-----NGLDLS 108

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               ID    A  +  +  N      L ++    GI       H +L D+ + + +Y   
Sbjct: 109 DQYQIDLFDEAYDRRSADLNGIANLRLQTVATFLGIK---GRGHNSLEDARMTAAIYKSF 165

Query: 175 MV 176
           + 
Sbjct: 166 LE 167


>gi|260805280|ref|XP_002597515.1| hypothetical protein BRAFLDRAFT_219821 [Branchiostoma floridae]
 gi|229282780|gb|EEN53527.1| hypothetical protein BRAFLDRAFT_219821 [Branchiostoma floridae]
          Length = 279

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 69/212 (32%), Gaps = 20/212 (9%)

Query: 10  IVFDIETTGLDSK----NDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
           +V D E T ++         IIE    +   +       F  +  P      +P   KL 
Sbjct: 69  LVIDFEATCMEENPPDFQHEIIEFPILLVNTETLIVEDQFHSYCRPTINPKLTPFCTKLT 128

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDV-GFINAELQRINKD 116
           GIT + +   P F  +  +  D+ + +          +A +  +D+  F+  +       
Sbjct: 129 GITQKMVDKAPEFPQVLEDVLDWMSSKGYGMGHSRFAVATDGPWDMCRFLYQQCLYCGIP 188

Query: 117 -PLDPSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            P    R I+        +       L  +    G+    +  H    D+  ++ +  ++
Sbjct: 189 YPRPFRRWINVKKHFANFYQTRGGTKLQEMLASLGLQFEGK-PHSGRDDAVNIARIAGRL 247

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
           +    Q     + NE       +  VP  + L
Sbjct: 248 I----QDGCELRVNECLNNGRVEPVVPPRAKL 275


>gi|332991573|gb|AEF01628.1| putative DNA polymerase [Alteromonas sp. SN2]
          Length = 227

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 14/168 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+E T L++    I   G V   + S    T   +     + +  ++  +HG+  + + 
Sbjct: 33  IDLELTSLNANESEITSFGWVCGRNSSIALET-SAYSVVKTKASLGQSPVIHGLIQDNIA 91

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA- 130
                  + ++F      +    + HNA  D+  ++A  +R+N  P      IDTL +A 
Sbjct: 92  KGEKIEDVLTKFTAQLPSK--VLVIHNANLDLAVLDAVFRRLNL-PAQEVYYIDTLQLAL 148

Query: 131 ---RRKH---PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              +++H   PS+   L +   R G+      +H AL D+ + + +  
Sbjct: 149 YELKKEHEVVPSNSASLGACLLRAGLPAV--PQHNALEDA-MAALLLC 193


>gi|313895399|ref|ZP_07828956.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976294|gb|EFR41752.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 219

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 69/185 (37%), Gaps = 24/185 (12%)

Query: 7   MRKIVFDIETTGLDSKN-----------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M+ IV D+E   ++                IIEIGAV L +       FQ ++CP     
Sbjct: 1   MKHIVVDLE---MNPIGKEYKEIRRKLNGEIIEIGAVRLSEKFVQEDKFQCYVCPEYGLV 57

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
                +L GIT E +  +  F+  F  F D+      +  + +   D+  +  E  R+  
Sbjct: 58  KKHITELTGITQEQVSGQRVFAESFKNFVDWIGASETKIYSWSMS-DIKQLRKEC-RLKV 115

Query: 116 DPLDPS----RIIDTLSIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSD 169
              D +    R +D L  A        N L +L    G        ++H AL D+   S 
Sbjct: 116 PDFDVNWLDMRWVD-LQQAFDDRLGLHNSL-ALKHALGAMGRRFEGTQHSALADAINTSA 173

Query: 170 VYIKM 174
           V   M
Sbjct: 174 VLTLM 178


>gi|330720654|gb|EGG98904.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC2047]
          Length = 478

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 61/181 (33%), Gaps = 25/181 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G D   DR  +   +   + ++        F  P       PEA  + GIT +  
Sbjct: 7   DFETFGADPFRDRPCQFAGIRTDEQFNIIGDPDVFFCKPADDVLPHPEACLITGITPQQA 66

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------DP 120
           LK+  S +   +   + F E       +N+ +FD       L R   DP           
Sbjct: 67  LKEGVSEAEFIARIHEQFAEPGTCVAGYNSIRFDDEVTRNALYRNFYDPYAREWQHGNSR 126

Query: 121 SRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             IID + + R   P                L  L    GI  SH + H AL D     +
Sbjct: 127 WDIIDMVRLTRALRPEGINWPEHEDGSPSFKLEQLTAANGI--SHEAAHDALSDVWATIE 184

Query: 170 V 170
           +
Sbjct: 185 L 185


>gi|329888661|ref|ZP_08267259.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568]
 gi|328847217|gb|EGF96779.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568]
          Length = 228

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 73/208 (35%), Gaps = 33/208 (15%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYS---KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            D ETTG++     +IE G  +L +        +  Q  L   G    PE   +H IT  
Sbjct: 2   IDFETTGMEPPTAEVIEYGWCDLTNDGSGWIVGKP-QAHLYSVG-SIPPETRAVHHITMS 59

Query: 69  FLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L D  + F     E  +   E  + + AHN  F+  FI                 I TL
Sbjct: 60  DLADVVTHFDEA--EVHNPI-EDVSVFAAHNLAFEDLFIPRRAL----------PGICTL 106

Query: 128 SIARRKHPS-SRNDLNSLCKRYG----ITISHRSK---HGALLDSHLLSDVYIKMMVGGS 179
             A R  P    +    L         +++ H +    H A  D+++ + +   +   G+
Sbjct: 107 KAALRVWPEAPSHSNGVLRYWLEDQGLLSLDHDTAMPPHRAGPDAYVTAHILKALFAAGA 166

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLK 207
                    +   + +E + +P   + K
Sbjct: 167 ------TGKDMVAWTKEPRLLPTCPIGK 188


>gi|197284734|ref|YP_002150606.1| exonuclease I [Proteus mirabilis HI4320]
 gi|194682221|emb|CAR41929.1| exodeoxyribonuclease I [Proteus mirabilis HI4320]
          Length = 476

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 77/217 (35%), Gaps = 25/217 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G     DR  +   V   +D++       ++  PN      PEA+ + GIT +  
Sbjct: 14  DYETFGTHPAMDRPAQFAGVRTDMDFNIIEDPLVIYCKPNDDYLPQPEAVMITGITPQIA 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           LK   S +    +    F++ N+  + +N  +FD       L R   DP   S       
Sbjct: 74  LKHGVSEAEFTRQIHQAFSQPNSCIMGYNNLRFDDEVTRNILYRNFYDPYAYSWQKGNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              +D L       P                L  L K  GI  SH + H A+ D +    
Sbjct: 134 WDLLDVLRACYALRPEGINWPENDDGFPSFRLELLTKANGI--SHENAHDAMSDVYATIA 191

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
           +  K+     ++   F    D+   +    +P ++ L
Sbjct: 192 MAKKLKQAQPRMFDYFFNLRDKRKVQALIDIPTMTPL 228


>gi|150015899|ref|YP_001308153.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902364|gb|ABR33197.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
          Length = 209

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 37/203 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           M+ + FD ETT +   +  I ++  +           T + F   +     +  P A ++
Sbjct: 1   MKLLFFDTETTSIKPGS--ICQLSYITVDASTKPQITTGKNFFFTVD----EMDPSAKEI 54

Query: 63  HGITDE---FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           HG + E    L D   F  +  EF + F   +   I HN  FDV F+  EL  + +D   
Sbjct: 55  HGFSLEKLYELSDGQYFEDLVPEFLEDFMTAD-FLIGHNVNFDVRFLKHELLSLGED-FY 112

Query: 120 PSRIIDTLSIARRKHPSSR-------NDLNSLCKRYGITISH------------RSKHGA 160
           P  +  T++  R      +         L+ +     I+ +              + H A
Sbjct: 113 PKNVFCTMAYYRDICKIPKANGEIKNPKLSEVIDWLNISSNQIVETSEKLFEGSGNYHDA 172

Query: 161 LLDSHLLSDVYIKMMVGGSQINF 183
             D+      Y+ ++ G  + +F
Sbjct: 173 RFDTAAT---YLTVIEGLKKGHF 192


>gi|329116993|ref|ZP_08245710.1| DNA polymerase III, epsilon subunit [Streptococcus parauberis NCFD
           2020]
 gi|326907398|gb|EGE54312.1| DNA polymerase III, epsilon subunit [Streptococcus parauberis NCFD
           2020]
          Length = 198

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 75/204 (36%), Gaps = 23/204 (11%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            +N    I FD+E    ++ +D+  +I++ A++  ++ + + +F  ++            
Sbjct: 1   MENLANYIAFDLE---FNTVDDKSHLIQLSAIKCQNHKEVD-SFDTYVY-TVVPLQSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT + +   P    + S+F  F    +   I +N+   D+  +       N   L 
Sbjct: 56  GLTGITADKIAGAPKVDQVISDFTSFVG--DLSLIGYNSHKSDLPILAE-----NGLDLT 108

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +D    A  +  +  N      L ++    GI       H +L D+ + + VY   
Sbjct: 109 SQYKVDLYDEAFERRSTDLNGIANLKLTTVADFLGIK---GRGHNSLEDARMTARVYETF 165

Query: 175 MVGGSQINFGFKTNEDRFFKEEKK 198
           +       +     E++    +  
Sbjct: 166 LEFDDNKTYLDHQEEEKMSSGDNP 189


>gi|291390710|ref|XP_002711856.1| PREDICTED: exoribonuclease 2 [Oryctolagus cuniculus]
          Length = 689

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 64/197 (32%), Gaps = 29/197 (14%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    N  IIE    +      +    F  ++ P      S   ++L 
Sbjct: 38  IVIDFESTCWNDGKHHHNQEIIEFPAVLLNTSTGEIESEFHTYVQPQEHPILSEFCMELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFD 102
           GI    + +        S+F  + ++                     Q   ++  +    
Sbjct: 98  GIKQAQVDEGVPLKICLSQFCKWIHKIQQQKKIVFSTGVSEPSSSEVQPCTFVTWSDWDL 157

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +  E +R     P+  +  ID  +  +  +      L+   +  GI  S R  H  L
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGRE-HSGL 216

Query: 162 LDSHLLSDVYIKMMVGG 178
            DS   + +  KM+  G
Sbjct: 217 DDSRNTALLAWKMIRDG 233


>gi|312863107|ref|ZP_07723345.1| DNA polymerase III, epsilon subunit [Streptococcus vestibularis
           F0396]
 gi|311100643|gb|EFQ58848.1| DNA polymerase III, epsilon subunit [Streptococcus vestibularis
           F0396]
          Length = 196

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 74/182 (40%), Gaps = 23/182 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            +N    I FD+E    ++ +    II++ A++L  + + ++ F  F+  +         
Sbjct: 1   MENLETYIAFDLE---FNTVDGVSHIIQVSAIKLNQHEEVDQ-FDSFVY-SDVPLQSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD 119
            L GIT + +   P   S+ ++F  F    +   I +NA K D+  +       N   L+
Sbjct: 56  GLTGITADKIAKAPKLESVLADFKSFVG--DTPLIGYNALKSDLPILAE-----NGLDLE 108

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +D    A  +  S  N      L S+   +GI       H +L D+ + + +Y K 
Sbjct: 109 EQYALDVSDEAFDRRASDLNGIVNLKLTSVADFFGIK---GHGHNSLEDARMTAQIYEKF 165

Query: 175 MV 176
           + 
Sbjct: 166 LE 167


>gi|160689434|gb|ABX45575.1| polymerase C [Bacillus amyloliquefaciens]
          Length = 259

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           D+GF+N   +R+ K     + +IDTL +AR  +P    + LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKRLLKPKKAKNPVIDTLELARFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+     + +KM+   ++  I +  + NE+
Sbjct: 59  VFDAEATGYLLLKMLKDAAEKDIFYHDQLNEN 90


>gi|320529722|ref|ZP_08030801.1| exonuclease [Selenomonas artemidis F0399]
 gi|320138083|gb|EFW29986.1| exonuclease [Selenomonas artemidis F0399]
          Length = 221

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 24/186 (12%)

Query: 6   KMRKIVFDIETTGLDSK-----------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           +M+ IV D+E   ++             N  IIEIGAV L +       FQ ++CP    
Sbjct: 2   RMKHIVVDLE---MNPIGKEYKEIRRKLNGEIIEIGAVRLSEKFVQEDKFQCYVCPEYGL 58

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
                 +L GIT E +  +  F+  F  F D+      +  + +   D+  +  E  R+ 
Sbjct: 59  VKKHITELTGITQEKVSGQRVFAESFKNFVDWIGASETKIYSWSMS-DIKQLRKEC-RLK 116

Query: 115 KDPLDPS----RIIDTLSIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLS 168
               D +    R +D L  A        N L +L    G        ++H AL D+   S
Sbjct: 117 VPDFDVNWLDMRWVD-LQQAFDDRLGLHNSL-ALKHALGAMGRRFEGTQHSALADAINTS 174

Query: 169 DVYIKM 174
            V   M
Sbjct: 175 AVLTLM 180


>gi|194476704|ref|YP_002048883.1| possible DNA polymerase III, epsilon subunit [Paulinella
           chromatophora]
 gi|171191711|gb|ACB42673.1| possible DNA polymerase III, epsilon subunit [Paulinella
           chromatophora]
          Length = 302

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 64/172 (37%), Gaps = 20/172 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + ++ D ETT L   +   IEIGA+   L +  T       L          +  L+GI+
Sbjct: 77  KLLILDTETTSLSPTDGNCIEIGAILFHLRHRATLSQIAFLLPCENNP----SYSLNGIS 132

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E  +    + +  S F       +   +AHNA FD        Q    DPL        
Sbjct: 133 AETTRLIYPWEAGLSYFLTLVESSDL-IVAHNASFDR-------QWFGIDPLPIINKPWL 184

Query: 127 LSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            S+     P  R+      +  L   YG+ +   S H AL D   +S V+ +
Sbjct: 185 CSMQDINWPVQRSLRSNPSIRDLALAYGVPVW--STHRALTDCLYMSQVFER 234


>gi|317057849|ref|YP_004106316.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
 gi|315450118|gb|ADU23682.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
          Length = 295

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 19/177 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+ D ETTGL   +D ++++  ++          +  +L P    +  EA  ++ IT   
Sbjct: 128 IIIDTETTGLSELDDELLQVSIIDDAGNVL----YNSYLRPLYHTSWKEAECVNNITPRM 183

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P+      +               N  FD  F+                ++D +++
Sbjct: 184 VAEAPTIYDEMPKINAIIKAAKKII-GFNTGFDENFLYFS----GGISWMNKEVVDVMTM 238

Query: 130 ARRKHPS--------SRNDLNSLCKRYGITISHR--SKHGALLDSHLLSDVYIKMMV 176
               +             +L      Y    S R    H +L D +    VY K++ 
Sbjct: 239 FAPIYGEWSEQYDDYKWQNLIKAADYYDYDWSSRPGEAHNSLADCYATLYVYNKIIE 295


>gi|90415078|ref|ZP_01223036.1| putative exonuclease I [Photobacterium profundum 3TCK]
 gi|90323813|gb|EAS40426.1| putative exonuclease I [Photobacterium profundum 3TCK]
          Length = 474

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 70/208 (33%), Gaps = 26/208 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEF 69
            D ET G     DR  +   V   +D++       ++  P      SPEA  + GIT + 
Sbjct: 12  IDYETFGATPATDRACQFAGVRTDMDFNIIGEPLVIYCKPPVDYLPSPEACLITGITPQE 71

Query: 70  LKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI---- 123
            ++K  S     ++     ++ N   I +N  +FD       L R   DP          
Sbjct: 72  AQEKGLSEPEFIAQIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFYDPYAWGWQNGNS 131

Query: 124 ----IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLLS 168
               +D +       P   N            L  L    GI   H + H A+ D +   
Sbjct: 132 RWDLLDIMRTCYALRPEGVNWPNNDEGLPSFKLEHLSVANGIE--HANAHDAMADVYATI 189

Query: 169 DVYIKMMVGGSQI-NFGFKTNEDRFFKE 195
           ++   +     ++ N+ F     R  +E
Sbjct: 190 ELAKILKTNQPKLFNYLFDLRHKRKLQE 217


>gi|139438610|ref|ZP_01772126.1| Hypothetical protein COLAER_01124 [Collinsella aerofaciens ATCC
           25986]
 gi|133776149|gb|EBA39969.1| Hypothetical protein COLAER_01124 [Collinsella aerofaciens ATCC
           25986]
          Length = 206

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 62/203 (30%), Gaps = 17/203 (8%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLKDKPSFSSIFS 81
            + IIE+GAV+L  +      F  F+     +     + +L GI+            +  
Sbjct: 2   RNEIIEVGAVKLDYHGNVMGEFSQFVQTEFTEGVAFPVRELTGISAVDTAMADPLYMVIK 61

Query: 82  EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-- 139
              D+    +A+ +  +       +     +       P+   D  +          +  
Sbjct: 62  RLSDWIGRYSAQIVCWSGTDRRQLMTECQAKQIDLAAFPTDWADLQAFYTSIMDVGSHEC 121

Query: 140 -DLNSLCKRYGITISH--RSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEE 196
             LN     +GI         H AL D+ + + +  ++M G           + R     
Sbjct: 122 VSLNDAATWFGIEFDESTGHAHSALADARVTAKLLKQVMDG-----------DYRVSPRA 170

Query: 197 KKTVPNISLLKRDKPLFTRITKE 219
           ++      +  R +   +    E
Sbjct: 171 QEIRQRWRMGDRAQMRLSNKCPE 193


>gi|83647725|ref|YP_436160.1| putative exonuclease [Hahella chejuensis KCTC 2396]
 gi|83635768|gb|ABC31735.1| putative exonuclease [Hahella chejuensis KCTC 2396]
          Length = 230

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 8/158 (5%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
              +R +  D+ETTGL+ K D +I IGAVE+ D S    ++F++ +  +    S   L +
Sbjct: 31  LEDIRWVAADVETTGLNIKKDVVIAIGAVEINDLSICLEQSFELLIDADTHLESDNIL-I 89

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HG++ + L            F  +     A  +A +A FD   +  E  R +        
Sbjct: 90  HGLSQQTLSQGAHPKEAIHSFLSY--AHGAALLAFHAPFDKAMLEKE-ARTHLGVSSRLP 146

Query: 123 IIDTLSIARRKHPSSRNDLNSL---CKRYGITISHRSK 157
             D     +   P + + L SL      +G+    R  
Sbjct: 147 FYDVAEWLKALCPEAPSHLRSLDDWSHYFGLYNDQRHH 184


>gi|160689394|gb|ABX45555.1| polymerase C [Bacillus tequilensis]
          Length = 259

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           D+GF+N   +++ +     + +IDTL + R  +P    + LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKKLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+   + + +KM+   ++  I +  + NE+
Sbjct: 59  IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90


>gi|152996402|ref|YP_001341237.1| exodeoxyribonuclease I [Marinomonas sp. MWYL1]
 gi|150837326|gb|ABR71302.1| Exodeoxyribonuclease I [Marinomonas sp. MWYL1]
          Length = 484

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 26/197 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEF 69
           FD ETTG D   DR ++   +   LD++        +          PEA  L GI+ + 
Sbjct: 12  FDFETTGTDPARDRPMQFAGIRTDLDFNPIGEPIMFYCRLAEDVLPQPEACLLTGISPQD 71

Query: 70  L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR----- 122
             ++    +          ++     + +N  +FD   +     R   DP          
Sbjct: 72  ANREGLCEAEFMQAVEAELSQPGTCALGYNTIRFDDEVVRYGFYRNFIDPYTREWQNNCS 131

Query: 123 ---IIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
              +ID + +     P                L +L K  GI  +H   H AL D +   
Sbjct: 132 RWDMIDLVRMTYAMRPEGIVWPKNEDGQVSMKLEALTKANGI--AHEQAHDALSDVYGTI 189

Query: 169 DVYIKMMVGGSQINFGF 185
           ++  K++       F +
Sbjct: 190 EI-AKLIRSKQPKLFAY 205


>gi|190575052|ref|YP_001972897.1| exonuclease I [Stenotrophomonas maltophilia K279a]
 gi|190012974|emb|CAQ46606.1| putative exodeoxyribonuclease I [Stenotrophomonas maltophilia
           K279a]
          Length = 479

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 67/189 (35%), Gaps = 28/189 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  A+    D ++ +     F+ P +    SP A  + GIT
Sbjct: 5   FLFYDLETFGQDPRRTRISQFAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLVTGIT 64

Query: 67  D-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI- 123
             + L +  S +  F    +  +      + +N  +FD  F+   L R   DP +     
Sbjct: 65  PQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYEREWRN 124

Query: 124 -------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                  +D L + R   P                L  L +   +       H AL D  
Sbjct: 125 GNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANHVR--EGDAHEALSDVR 182

Query: 166 LL---SDVY 171
                + ++
Sbjct: 183 ATIGMARLF 191


>gi|254491492|ref|ZP_05104671.1| Exonuclease C-terminal domain family [Methylophaga thiooxidans
           DMS010]
 gi|224462970|gb|EEF79240.1| Exonuclease C-terminal domain family [Methylophaga thiooxydans
           DMS010]
          Length = 479

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 33/225 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET+G+D + DR ++   V    D +       ++  P+G     P+A  + G+T + L
Sbjct: 8   DYETSGIDPRFDRPMQFAGVRTDEDLNIIGEPLMIYCKPSGDYLPHPQAALVTGLTPQ-L 66

Query: 71  KDKPSFSSI--FSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------D 119
            +K   +      +  D         + +N+ +FD  F    L R   D           
Sbjct: 67  AEKEGLNEAEFIKQIHDELAAPGTCGVGYNSLRFDDEFTRFTLFRNFYDAYAREWQSGNS 126

Query: 120 PSRIIDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLLS 168
              IID + + R   P   +            L  L    GI   H   H AL D +   
Sbjct: 127 RWDIIDMVRLTRALRPEGIHWPNREDGKPSFRLEDLTAANGIE--HSGAHDALADVYATI 184

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
           ++  +++       + +      F +  K+T+  +  L   KP+ 
Sbjct: 185 EM-ARLIKNAQPKLYDY-----VFERRRKQTLAPLLNLNERKPVV 223


>gi|293977832|ref|YP_003543262.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri
           DMIN]
 gi|292667763|gb|ADE35398.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri
           DMIN]
          Length = 1405

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 23/190 (12%)

Query: 9   KIVFDIETTGLDSKND------------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
            I+FD ETTGL    +            R++++  V L +  +        + P G +  
Sbjct: 2   YIIFDTETTGLPLDFNTPIINIINLPLPRLVKLSWVLLDEKLQLIELKDYIIKPEGYEIP 61

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114
             + K+HGI+ ++  +K    + +  EF +   +++   I HN  FD+  + AE  RI+ 
Sbjct: 62  FNSTKIHGISTKYAIEKGIKINFVLEEF-NLIIKKSNFLIGHNVFFDIKIVCAEFIRIHK 120

Query: 115 KDPLDPSRIIDTLS-----IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168
           K      +IIDT        A +     +   L  L K+  +       H +  D    +
Sbjct: 121 KISFFKKKIIDTKEISINYCAIKMGEKLKWPTLTELYKK--LFNDTFIAHDSKSDVLATT 178

Query: 169 DVYIKMMVGG 178
             + +++  G
Sbjct: 179 KCFFELLRIG 188


>gi|257125974|ref|YP_003164088.1| exonuclease RNase T and DNA polymerase III [Leptotrichia buccalis
           C-1013-b]
 gi|257049913|gb|ACV39097.1| Exonuclease RNase T and DNA polymerase III [Leptotrichia buccalis
           C-1013-b]
          Length = 212

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 80/202 (39%), Gaps = 33/202 (16%)

Query: 1   MIRKNKMR--KIVFDIETTGLDSKNDRIIEIGAVE-----------LLDYSKTNRTFQVF 47
           M ++ K+    I FD+ET G   +   ++ + A++              + K +   + +
Sbjct: 1   MNKEKKINKNIIFFDVETNGF--QGSSVLSMSAIKVNYNSENTGEEKNKWKKVSEFNRFY 58

Query: 48  LCPNGRKNSPEALKLHGITDEFL------------KDKP-SFSSIFSEFWDFFNEQNAEW 94
               G + +  A+ ++G+TD+ +             + P +F      F+ F  +  + +
Sbjct: 59  FRNEGEELNEGAVSVNGLTDDVILSERKSIIQNTGIEYPLTFKEDMDNFFLFCQDT-SHF 117

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITIS 153
           +AHN KFD  F++  LQ            ID + +    + + +   L      Y I   
Sbjct: 118 VAHNIKFDRSFVDFPLQ---NQFDTMLTNIDIVKVNGSSYGNYKWPKLMECANYYNIPFE 174

Query: 154 HRSKHGALLDSHLLSDVYIKMM 175
               HG+  D  ++  ++ KMM
Sbjct: 175 ESQLHGSYYDVLIMFRIFFKMM 196


>gi|229031191|ref|ZP_04187200.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH1271]
 gi|228730118|gb|EEL81089.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH1271]
          Length = 273

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++     K    F   + P+ R  +    KL GIT + L     F  I  +F
Sbjct: 18  EIVDIGAVKIEASTMKVIGEFSELVKPSAR-LTRHTTKLTGITKKDLIGVEKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--IIDT---LSIARRKHPSSR 138
             F   +++ +++   + D  F++ +      +     +    D    +  A  +     
Sbjct: 77  IQFIG-EDSMFVSW-GREDYRFLSHDCTLHGVECPCMEKESKFDLQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L    ++ G+T   +  H AL D+   +++ +K
Sbjct: 135 PSLQFAVEQLGLTWEGKQ-HRALADAENTANILLK 168


>gi|167035442|ref|YP_001670673.1| exonuclease I [Pseudomonas putida GB-1]
 gi|166861930|gb|ABZ00338.1| Exodeoxyribonuclease I [Pseudomonas putida GB-1]
          Length = 477

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 74/226 (32%), Gaps = 26/226 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ + DR +++  V    D ++ +    ++  P+      P A  + GIT + L
Sbjct: 9   DYETTGINPRCDRPLQVAGVRTDFDLNEIDEPISLYCRPSDDILPHPAACLVTGITPQLL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++        ++ +    +       +N  +FD       L R   DP           
Sbjct: 69  AEQGLCEAEFMTQVYAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L K  GI   H   H AL D      +
Sbjct: 129 WDLIDIVRTAYALRPDGIQWPQQDGRTSLRLELLSKANGID--HGHAHEALSDVRAT--I 184

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            +  ++   Q        + R   +  + +  +  L      F+  
Sbjct: 185 ALARLIRQKQPKLYDWLFQLRSKHKVMEQIRLLQPLVHISGRFSAA 230


>gi|297622496|ref|YP_003703930.1| exonuclease RNase T and DNA polymerase III [Truepera radiovictrix
           DSM 17093]
 gi|297163676|gb|ADI13387.1| Exonuclease RNase T and DNA polymerase III [Truepera radiovictrix
           DSM 17093]
          Length = 224

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 16/163 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ETTGL  + D  + +G V +   +    T +  +    R+ +  A  +HG+TD+
Sbjct: 42  YVAVDLETTGLRPRWDAPLSVGWVLVRAGAIELATARYAVLRAKREVAQSAT-VHGLTDD 100

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D     +                +AH+A  ++ F++   +     PL   R++DTL+
Sbjct: 101 AVADG--EDAAAVLAELLAVLAGRVLVAHHAAIELRFLDRLCREHFGGPLLV-RVVDTLA 157

Query: 129 IARRKHPSSRN--------DLNSLCKRYGITISHRSKHGALLD 163
           +A R   + R+         L+++  RYG+     + H AL D
Sbjct: 158 LAAR--SAERHGAVDENALRLHAVRARYGLP--RYAAHSALSD 196


>gi|261252841|ref|ZP_05945414.1| exodeoxyribonuclease I [Vibrio orientalis CIP 102891]
 gi|260936232|gb|EEX92221.1| exodeoxyribonuclease I [Vibrio orientalis CIP 102891]
          Length = 474

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M ++++     FD ET G     DR  +   V   +D++       ++  P       PE
Sbjct: 1   MRQEHQPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPHPE 60

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +  + +  S     ++  +     N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQTAETQGLSEPEFIAKIHEQLATPNTINLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L K  GI   H + 
Sbjct: 121 PYAWSWQNGNSRWDLLDVMRACYALRPEGIEWPVNDEGFISFKLEHLSKENGIE--HENA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIEMAKKVKAAQPKL 202


>gi|90578663|ref|ZP_01234473.1| putative exonuclease I [Vibrio angustum S14]
 gi|90439496|gb|EAS64677.1| putative exonuclease I [Vibrio angustum S14]
          Length = 473

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 62/193 (32%), Gaps = 25/193 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M  KN+      D ET G    NDR  +   V   +D +       ++  P       PE
Sbjct: 1   MNDKNQATLYWIDYETFGASPANDRPCQFAGVRTDMDMNIIGEPLVIYCKPPADYLPSPE 60

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +   +K  S            ++ N   I +N  +FD       L R   D
Sbjct: 61  ACLITGITPQEAMEKGLSEPEFIEAIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFFD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSK 157
           P   +          +D +       P   N            L  L    GI   H + 
Sbjct: 121 PYGWAWQNGNSRWDLLDIMRTCYALRPEGVNWPLDDEDRPSFKLEKLSIANGIE--HANA 178

Query: 158 HGALLDSHLLSDV 170
           H A+ D +   ++
Sbjct: 179 HDAMADVYATIEL 191


>gi|194290059|ref|YP_002005966.1| membrane linked exonuclease [Cupriavidus taiwanensis LMG 19424]
 gi|193223894|emb|CAQ69903.1| putative membrane linked exonuclease [Cupriavidus taiwanensis LMG
           19424]
          Length = 248

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 63/182 (34%), Gaps = 19/182 (10%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCPNG-RKNSPEAL 60
            MR  +   ETTGL    D  + IG     V            + +         S  A 
Sbjct: 2   PMRVAIVSTETTGLTPA-DEPVSIGLLLVEVSPRAGGLLREVAEYYGSQEPTVPISAAAT 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
             HG+T + L+ +  F           ++ +   +AH A F+   +   L       +  
Sbjct: 61  DTHGLTADMLRGR-RFD--LGAIRAIIDDAD-VLVAHGAAFNARMLEKVL-----PGIRD 111

Query: 121 SRIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            R   ++   R  +   ++ + L++LC++  I         AL D   LS +  + +   
Sbjct: 112 KRWRCSVRQVRWSQYFHAANHKLDTLCEQLHIFRPRPQV--ALDDCLALSKLLFRPISAT 169

Query: 179 SQ 180
            Q
Sbjct: 170 QQ 171


>gi|330829910|ref|YP_004392862.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565]
 gi|328805046|gb|AEB50245.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565]
          Length = 208

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 61/152 (40%), Gaps = 9/152 (5%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K  ++  D ETT LD +   I+ IGAV +  +   T     + + P     + +++ +HG
Sbjct: 28  KDEQVALDFETTSLDPEQAEIVSIGAVRIQGNRLLTGEALAIKVQPP-ASLTGQSVVIHG 86

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +  + L+   +  +       F   +  E + ++  +D+  +N   Q++ +  L    I 
Sbjct: 87  LRHQDLQQGMTLEAALRLLLHFIGPR--ELVGYHVAYDLRILNLACQKLWELTLPQRGIE 144

Query: 125 DTLSIARRKHPSSRN-----DLNSLCKRYGIT 151
            +       +    +      L+++C    + 
Sbjct: 145 VSQLYHDHLYRRYPDAAIDLHLSAICSHLELP 176


>gi|115376299|ref|ZP_01463539.1| ATP-dependent DNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|115366724|gb|EAU65719.1| ATP-dependent DNA helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 935

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 12/173 (6%)

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
             R       +L GI D  L  KP F S   E  +         +AHNA F+ GF+   L
Sbjct: 4   PSRPLPITIRRLTGIEDAMLAGKPRFGSDLDELREAL--TGWTVVAHNAPFEKGFLPKLL 61

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             I       + ++D+  +    HP  S + L ++ +  G+    RS H    D      
Sbjct: 62  GPI------RAPVLDSCELLHYLHPELSSHSLEAMMRWAGLKP--RSTHRVETDCEATYA 113

Query: 170 VYIKMMVGGSQINFGFK-TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           V  + + G  +       ++       + +    ++ ++  +   +    EE 
Sbjct: 114 VLSRALEGCIREGRADDISDLLAVLDPQARGGLRLAQVEAGEAPASESPAEER 166


>gi|160689410|gb|ABX45563.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
          Length = 259

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           D+GF+N   +++ +     + +IDTL + R  +P    + LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKKLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+   + + +KM+   ++  I +  + NE+
Sbjct: 59  IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90


>gi|160689338|gb|ABX45527.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689350|gb|ABX45533.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|160689352|gb|ABX45534.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|160689354|gb|ABX45535.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689356|gb|ABX45536.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|160689358|gb|ABX45537.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|160689360|gb|ABX45538.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689362|gb|ABX45539.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689412|gb|ABX45564.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689414|gb|ABX45565.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|293627263|gb|ADE58306.1| DNA polymerase III alpha subunit [Bacillus subtilis subsp.
           inaquosorum]
          Length = 259

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           D+GF+N   +++ +     + +IDTL + R  +P    + LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKKLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+   + + +KM+   ++  I +  + NE+
Sbjct: 59  IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90


>gi|229159168|ref|ZP_04287203.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus ATCC
           4342]
 gi|228624302|gb|EEK81094.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus ATCC
           4342]
          Length = 273

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++     K    F   + P G + +    KL GIT + L     F  I  +F
Sbjct: 18  EIVDIGAVKIEASTMKVIGEFSELVKP-GARLTRHTTKLTGITKKDLIGVEKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRIIDT---LSIARRKHPSSR 138
             F   +++ ++    + D  F++ +          +D  R ID    +  A  +     
Sbjct: 77  VQFIG-ESSIFVTWGKE-DYRFLSHDCTLHSVECPRMDKERRIDLQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L S  ++ G+T   +  H AL D+   +++ +K
Sbjct: 135 PSLQSAVEQLGLTWEGKQ-HRALSDAENTANILLK 168


>gi|226942744|ref|YP_002797817.1| DNA polymerase III subunit epsilon [Azotobacter vinelandii DJ]
 gi|226717671|gb|ACO76842.1| DNA polymerase III, epsilon subunit [Azotobacter vinelandii DJ]
          Length = 240

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 10/159 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
            +  R +V D+ETTGL+ + D ++ IGAV + + +   +R F+  L     K+  E++ +
Sbjct: 39  LHAQRFVVLDLETTGLNVERDVVLSIGAVLIENDAIDLSRQFECTLR-RRLKSVTESVLI 97

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPS 121
           HGI    L    + +     F ++    +  ++A +A FD   +   L+  +      P 
Sbjct: 98  HGIAPSALAVGTAPAEALLRFMEYAG--DCVFLAFHAPFDQRMLGRALKDELGYRLRHPF 155

Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSK 157
             +D   +A    P        L+   + +G+ +S R  
Sbjct: 156 --LDVADLAPMLFPEALVHPGGLDQWIQYFGLDMSRRHH 192


>gi|71904232|ref|YP_281035.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes
           MGAS6180]
 gi|71803327|gb|AAX72680.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes MGAS6180]
          Length = 208

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 23/182 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K+    I FD+E    ++ ND   +I++ AV+  D+ K   +F  ++            
Sbjct: 14  MKHLDTYIAFDLE---FNTVNDVSHVIQVSAVKY-DHHKEVDSFDTYVY-TDVPLQSFIN 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT + +   P    + + F +F  E     I +NA+  D+  +       N   L 
Sbjct: 69  GLTGITSDKIAAAPKVEEVMAAFKNFVGE--LPLIGYNAQKSDLPILAE-----NGLDLR 121

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               ID    A  +  +  N      L ++    GI       H +L D+ + + +Y   
Sbjct: 122 DQYQIDLFDEAYDRRSADLNGIANLRLQTVATFLGIK---GRGHNSLEDARMTAAIYKSF 178

Query: 175 MV 176
           + 
Sbjct: 179 LE 180


>gi|322499704|emb|CBZ34778.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 509

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 33/223 (14%)

Query: 6   KMRKIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEA 59
             R   FD+E TG      D   + I E+G    L     + TF   + P  GRK  P  
Sbjct: 87  PFRVFTFDMEFTGPPVFTADGPTEDITELGLYSPL----LDETFSCLVQPVCGRKQGPGV 142

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKF-DVGFIN 107
            +L  ITD  L K+   F   + +F +F           +E+    ++H  K  DV  I 
Sbjct: 143 EELTHITDMMLEKEGIPFVEAWQQFLNFVQTPQPDEISGSEERILLLSHGGKLADVSLIK 202

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPS---------SRNDLNSLCKRYGITISHRSKH 158
             L++ + +        DT+ + R  H               L  L +   I  +    H
Sbjct: 203 WTLEKFHMELPPSFVFGDTIHLIRDAHRRRPVTIDKHPPSWKLVDLVQWLHIPPTL-PAH 261

Query: 159 GALLDSHLLSD-VYIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A  D+ +  D +Y  ++  G       +    RFF  E K +
Sbjct: 262 RAGNDARMTWDALYHTLLRYGDDEMAPREQLVPRFFDAEAKQL 304


>gi|258514625|ref|YP_003190847.1| Exonuclease RNase T and DNA polymerase III [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778330|gb|ACV62224.1| Exonuclease RNase T and DNA polymerase III [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 957

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 17/170 (10%)

Query: 16  TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPS 75
           TTG D   + +IE   V  +  S+   T   +  P  RK       + G++DE L DKP 
Sbjct: 12  TTGNDPLKEDVIETSLVR-VSGSQIAETISFYSKP-ARKLPVRVKNITGLSDETLADKPF 69

Query: 76  FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHP 135
           F+ +  E   F     +  +      +   I          PL P+  +D + +A+  +P
Sbjct: 70  FNELLPEILSFIGA--STLV----SCEADLIYIFFSAAAGYPL-PNLCLDVVQLAQILYP 122

Query: 136 SS-RNDLNSLCKRYG-----ITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +     L +L +        ++ S     G +  + L + V++K+  G  
Sbjct: 123 TLINYRLANLYEYLFNTDDILSSSDNILAGEM--ALLTARVFLKLREGFR 170


>gi|160689348|gb|ABX45532.1| polymerase C [Bacillus subtilis subsp. spizizenii]
          Length = 259

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           D+GF+N   +++ +     + +IDTL + R  +P    + LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKKLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+   + + +KM+   ++  I +  + NE+
Sbjct: 59  IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90


>gi|251794793|ref|YP_003009524.1| exonuclease RNase T and DNA polymerase III [Paenibacillus sp.
           JDR-2]
 gi|247542419|gb|ACS99437.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus sp.
           JDR-2]
          Length = 264

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 78/212 (36%), Gaps = 10/212 (4%)

Query: 7   MRKIVFDIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKL 62
           M  I+ DIE  G    +D    +IEIGAV L    +    F   + P    K +    K 
Sbjct: 1   MDYIILDIEFNGRKFASDLPMEVIEIGAVRLNADLQQTDIFSSLIKPVYFSKLNSFIKKK 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKD--PLD 119
            GI  E +   P F  +  EF ++  ++   ++       D+  I  + +    D     
Sbjct: 61  TGIPQEEIDIAPKFPRVIGEFINWL-DRGEPFMLFTWGGEDLKRIVYDTRMHKLDDAFWL 119

Query: 120 PSRIIDTLS-IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                D L    R K+ ++   + +      +     + H AL D+ + +DV+  +    
Sbjct: 120 SMDTFDLLKGYLRYKNITNDVSVEAALADLNLVFEG-NAHRALDDAIMTADVFRAIFEHL 178

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
               +  K  +     +E++ V N     R +
Sbjct: 179 DLDTYKQKYKDLYTNAKERRMVKNAVRAMRAQ 210


>gi|229179820|ref|ZP_04307167.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           172560W]
 gi|228603649|gb|EEK61123.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           172560W]
          Length = 273

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++ +   K    F   + P+ R  +    KL GIT   L     F  I  +F
Sbjct: 18  EIVDIGAVKIEIGTMKIIEEFSELVKPSAR-LTRHTTKLTGITKTDLMAVDKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDPSRIIDT---LSIARRKHPSSR 138
             F   +++ +++   + D  F++ +      +   ++    ID    +  A  +     
Sbjct: 77  IQFIG-EDSIFVSWGKE-DYRFLSHDCTLHGVECPIIEKESRIDLQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L    ++  +T   +  H AL D+   +++ +K
Sbjct: 135 PSLQFAVEQLALTWEGKQ-HRALADAENTANILLK 168


>gi|94991158|ref|YP_599258.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes
           MGAS10270]
 gi|94544666|gb|ABF34714.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes
           MGAS10270]
          Length = 199

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 23/182 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K+    I FD+E    ++ ND   +I++ AV+  D+ K   +F  ++            
Sbjct: 5   MKHLDTYIAFDLE---FNTVNDVSHVIQVSAVKY-DHHKEVDSFDTYVY-TDVPLQSFIN 59

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT + +   P    + + F DF  E     I +NA+  D+  +       N   L 
Sbjct: 60  GLTGITSDKIAAAPKVEEVITAFKDFVGE--LPLIGYNAQKSDLPILAE-----NGLDLR 112

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               ID    A  +  +  N      L ++    GI       H +L D+ + + +Y   
Sbjct: 113 DQYQIDLFDEAYDRRSADLNGIANLRLQTVATFLGIK---GRGHNSLEDARMTAAIYKSF 169

Query: 175 MV 176
           + 
Sbjct: 170 LE 171


>gi|89074290|ref|ZP_01160780.1| putative exonuclease I [Photobacterium sp. SKA34]
 gi|89049994|gb|EAR55528.1| putative exonuclease I [Photobacterium sp. SKA34]
          Length = 473

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 61/193 (31%), Gaps = 25/193 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M  KN+      D ET G    NDR  +   V   +D +       ++  P       PE
Sbjct: 1   MNDKNQATLYWIDYETFGASPANDRPCQFAGVRTDMDMNIIGEPLVIYCKPPADYLPSPE 60

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +   +K  S            ++ N   I +N  +FD       L R   D
Sbjct: 61  ACLITGITPQEAMEKGLSEPEFIEAIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFFD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   +          +D +       P                L  L    GI   H + 
Sbjct: 121 PYGWAWQNGNSRWDLLDIMRTCYALRPEGINWPLDDEDRPSFKLEKLSVANGIE--HANA 178

Query: 158 HGALLDSHLLSDV 170
           H A+ D +   ++
Sbjct: 179 HDAMADVYATIEL 191


>gi|160689328|gb|ABX45522.1| polymerase C [Bacillus subtilis]
 gi|160689330|gb|ABX45523.1| polymerase C [Bacillus subtilis]
 gi|160689334|gb|ABX45525.1| polymerase C [Bacillus subtilis]
 gi|160689342|gb|ABX45529.1| polymerase C [Bacillus subtilis]
 gi|160689374|gb|ABX45545.1| polymerase C [Bacillus subtilis]
 gi|160689376|gb|ABX45546.1| polymerase C [Bacillus subtilis]
 gi|160689378|gb|ABX45547.1| polymerase C [Bacillus subtilis]
 gi|160689404|gb|ABX45560.1| polymerase C [Bacillus subtilis]
 gi|160689422|gb|ABX45569.1| polymerase C [Bacillus subtilis]
 gi|160689426|gb|ABX45571.1| polymerase C [Bacillus subtilis]
 gi|160689428|gb|ABX45572.1| polymerase C [Bacillus subtilis]
 gi|160689430|gb|ABX45573.1| polymerase C [Bacillus subtilis]
 gi|160689436|gb|ABX45576.1| polymerase C [Bacillus subtilis]
 gi|160689440|gb|ABX45578.1| polymerase C [Bacillus subtilis]
 gi|160689450|gb|ABX45583.1| polymerase C [Bacillus subtilis]
 gi|160689460|gb|ABX45588.1| polymerase C [Bacillus subtilis]
          Length = 259

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           D+GF+N   +++ +     + +IDTL + R  +P    + LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKKLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+   + + +KM+   ++  I +  + NE+
Sbjct: 59  IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90


>gi|160689336|gb|ABX45526.1| polymerase C [Bacillus amyloliquefaciens]
          Length = 259

 Score = 76.8 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           D+GF+N   +R+ K     + +IDTL +AR  +P    + LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKRLLKTEKAKNPVIDTLELARFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+     + +KM+   ++  I +  + NE+
Sbjct: 59  VFDAEATGYLLLKMLKDAAEKDIFYHDQLNEN 90


>gi|281205101|gb|EFA79294.1| hypothetical protein PPL_07712 [Polysphondylium pallidum PN500]
          Length = 1364

 Score = 76.8 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 64/180 (35%), Gaps = 32/180 (17%)

Query: 9    KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----SPEALKLHG 64
             +  D+E  G     D I EI A+++     T++ F   + P            + ++  
Sbjct: 1119 FVALDLEAAG-----DAICEIAAIDM----TTSKCFTSMVNPGPGAPFTYCPVSSQEVTQ 1169

Query: 65   ITDEFLKDKPSFSSIFSEFWDFFNE------QNAEWIAHNAK-FDVGFINAELQRINKDP 117
            +          ++ +   F+ +         Q    + HN K +D+  +  +  +     
Sbjct: 1170 LPHH-------WNRVGQAFYSWLESLRDNESQIIYLVGHNIKGYDLNKLQKDSIKHAIGT 1222

Query: 118  LDPSRIIDTLS---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                RIIDTL     A++ +      L SL   Y I+  H   H AL D      V  K+
Sbjct: 1223 PTNVRIIDTLDNLDWAKKHYRFDSKKLLSLAAIYSISNPH--PHRALFDVITTIKVIEKL 1280


>gi|160689332|gb|ABX45524.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689388|gb|ABX45552.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689406|gb|ABX45561.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689408|gb|ABX45562.1| polymerase C [Bacillus amyloliquefaciens]
          Length = 259

 Score = 76.8 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           D+GF+N   +R+ K     + +IDTL +AR  +P    + LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKRLLKTEKAKNPVIDTLELARFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+     + +KM+   ++  I +  + NE+
Sbjct: 59  VFDAEATGYLLLKMLKDAAEKDIFYHDQLNEN 90


>gi|94496850|ref|ZP_01303425.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease
           [Sphingomonas sp. SKA58]
 gi|94423863|gb|EAT08889.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease
           [Sphingomonas sp. SKA58]
          Length = 312

 Score = 76.8 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 59/168 (35%), Gaps = 19/168 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +  D+ETTGLD + DRIIE+                   +V+    G        KL G+
Sbjct: 67  VAVDVETTGLDRETDRIIELAVQRFRFDALGRVIQVGVPRVWREDPGIPIDLRITKLTGL 126

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRII 124
             + L  +    +   E            +AHNA FD  FI+  L  I  K        +
Sbjct: 127 MADDLAGQVIDETAAVEIL----SSADIIVAHNAAFDRPFIDRRLPAIAGKPWACSMAEL 182

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           D L +           L  L  + G        H A  D  +L+ +Y+
Sbjct: 183 DWLELGFD-----GRALAHLVSQCGWFYEG---HRAEND--ILALIYL 220


>gi|160935985|ref|ZP_02083359.1| hypothetical protein CLOBOL_00882 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441227|gb|EDP18944.1| hypothetical protein CLOBOL_00882 [Clostridium bolteae ATCC
           BAA-613]
          Length = 337

 Score = 76.8 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 78/214 (36%), Gaps = 18/214 (8%)

Query: 7   MRKIVFDIETT-GLDSKND-------RIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSP 57
           M  IVFD+E     + K D        IIEIGAV+L    +   TF   + P   +K   
Sbjct: 1   MNYIVFDLEWNQSPNGKEDSVEHLPFEIIEIGAVKLNGNFEQTGTFHKLIRPKVYKKMHF 60

Query: 58  EALKLHGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           +  ++  +    L+ +   F  + + F  +  E+   +       D+  +   +      
Sbjct: 61  KISEVTHMDMAELRQEGEPFDVVMNRFLAWCGEEEYCFCTW-GSMDLTELQRNMAYHKLP 119

Query: 117 PLDPSR--IIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY- 171
              P     +D   +   ++   +N   L+   +  G+    R  H AL D++    +  
Sbjct: 120 NPFPRPLLYLDIQKLYCLQYGDGKNKVSLDMAVQIQGME-EERPFHRALDDAYYTGRILS 178

Query: 172 -IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204
            + M   G+ ++  +        +E +   P  S
Sbjct: 179 VLDMETFGTYVSVDYYGLPRNKAEEYRLHFPEYS 212


>gi|227111961|ref|ZP_03825617.1| exonuclease I [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 475

 Score = 76.8 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 65/197 (32%), Gaps = 28/197 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPE 58
           M  K +    + D ET G     DR  +   V   +D++       ++  P +     PE
Sbjct: 1   MAEKTQPTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPADDYLPEPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A+ + GIT +  L    + +    +  D F+      + +N  +FD         R   D
Sbjct: 61  AVMITGITPQVALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L K  GI  SH   
Sbjct: 121 PYAYSWQNGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGI--SHEQA 178

Query: 158 HGALLDSHLL---SDVY 171
           H A+ D +     + ++
Sbjct: 179 HDAMSDVYATIAMAKLF 195


>gi|109896857|ref|YP_660112.1| exonuclease, RNase T and DNA polymerase III [Pseudoalteromonas
           atlantica T6c]
 gi|109699138|gb|ABG39058.1| Exonuclease, RNase T and DNA polymerase III [Pseudoalteromonas
           atlantica T6c]
          Length = 224

 Score = 76.8 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 13/188 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +    +  +  D+E T LD  + +I+ IG VE      + ++    +       +   + 
Sbjct: 22  MPLADIPFLCIDLELTSLDLNDTKILSIGWVEGKGKQISLQSCYYQVISTTASLNQSPV- 80

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HG+T + +               F +     W+ H    D+  +N   +++N  PL   
Sbjct: 81  IHGLTADHIAQGQPLRIALEALKQFASSH--VWVFHCTHLDMTVLNGVFKKLNI-PLPTV 137

Query: 122 RIIDTLSIA-----RRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             +DTL        +   P   N   L     RY +       H AL D+    ++    
Sbjct: 138 VTLDTLRFGLYQLTKNLRPPPPNAVVLPVCRARYNLPAV--PAHNALDDAMATLELLFAQ 195

Query: 175 MVGGSQIN 182
           +   +  N
Sbjct: 196 IQKFAPKN 203


>gi|301604764|ref|XP_002932007.1| PREDICTED: ERI1 exoribonuclease 2 [Xenopus (Silurana) tropicalis]
          Length = 693

 Score = 76.8 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 66/196 (33%), Gaps = 28/196 (14%)

Query: 10  IVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           I+ D E+T           IIE    +  +   +    F  ++ P      S    +L G
Sbjct: 39  IIIDFESTCWKDGKHSTQEIIEFPAVLLNVANGEIESEFHTYVQPQEHPILSEFCTELTG 98

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF----NEQNAEWIA----HNAK------------FDVG 104
           I    + +        S+F  +      E+   ++     H+A             +D+G
Sbjct: 99  IKQLQVDNGVPLKICLSQFNSWIQKLQKEKGIAFVTAVPTHSAAEHKMCAFVTWSDWDLG 158

Query: 105 F--INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
              +    ++  K P   +  ID  +  +  +      LN   +  GI  S R  H  L 
Sbjct: 159 VCLLYECRRKQMKKPDILNSWIDLRATYKLFYNRRPKGLNGALQDLGIEFSGRE-HSGLD 217

Query: 163 DSHLLSDVYIKMMVGG 178
           DS   + +  +M+  G
Sbjct: 218 DSRNTAKLAWRMIRDG 233


>gi|266625917|ref|ZP_06118852.1| DNA polymerase III, alpha subunit [Clostridium hathewayi DSM 13479]
 gi|288862187|gb|EFC94485.1| DNA polymerase III, alpha subunit [Clostridium hathewayi DSM 13479]
          Length = 333

 Score = 76.8 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGIT 151
             +AHNA FDV FIN   + +         ++DT+++AR   P+  R  L+++ K   I+
Sbjct: 1   VLVAHNASFDVSFINRNAEILGLPFEPT--VLDTVTLARFLLPNLNRFKLDTVAKALNIS 58

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +++   H A+ D+   +++++K +    +   
Sbjct: 59  LANH--HRAVDDAGCTAEIFVKFVQMLRERGV 88


>gi|160689368|gb|ABX45542.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689370|gb|ABX45543.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689396|gb|ABX45556.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689398|gb|ABX45557.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689444|gb|ABX45580.1| polymerase C [Bacillus amyloliquefaciens]
          Length = 259

 Score = 76.8 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           D+GF+N   +R+ K     + +IDTL +AR  +P    + LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKRLLKTEKAKNPVIDTLELARFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+     + +KM+   ++  I +  + NE+
Sbjct: 59  VFDAEATGYLLLKMLKDAAEKDIFYHDQLNEN 90


>gi|330446032|ref|ZP_08309684.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490223|dbj|GAA04181.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 473

 Score = 76.4 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 61/193 (31%), Gaps = 25/193 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M  KN+      D ET G    NDR  +   V   +D +       ++  P       PE
Sbjct: 1   MNDKNQATLYWIDYETFGASPANDRPCQFAGVRTDMDMNIIGEPLVIYCKPPADYLPSPE 60

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +   +K  S            ++ N   I +N  +FD       L R   D
Sbjct: 61  ACLITGITPQEAMEKGLSEPEFIEAIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFFD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   +          +D +       P                L  L    GI   H + 
Sbjct: 121 PYGWAWQNGNSRWDLLDIMRTCYALRPDGLNWPLDDEDRPSFKLEKLSVANGIE--HANA 178

Query: 158 HGALLDSHLLSDV 170
           H A+ D +   ++
Sbjct: 179 HDAMADVYATIEL 191


>gi|229197646|ref|ZP_04324367.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus m1293]
 gi|228585835|gb|EEK43932.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus m1293]
          Length = 273

 Score = 76.4 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++     K    F   + P G + +    KL GIT + L +   F  I   F
Sbjct: 18  EIVDIGAVKIEASTMKIIGEFSELVKP-GARLTRHTTKLTGITKKDLMNVEKFPQIIERF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAEL--QRINKDPLDPSRIIDT---LSIARRKHPSSR 138
             F   +++ ++    + D  F++ +     +    ++  R ID    +  A  +     
Sbjct: 77  IQFIG-EDSIFVTWGKE-DYRFLSHDCTLHAVECPCMEKERRIDLQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L S  ++ G+    +  H AL D+   +++ +K
Sbjct: 135 PSLQSAVEQLGLIWEGKQ-HRALADAENTANILLK 168


>gi|94989217|ref|YP_597318.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes
           MGAS9429]
 gi|94993104|ref|YP_601203.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes
           MGAS2096]
 gi|94542725|gb|ABF32774.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes MGAS9429]
 gi|94546612|gb|ABF36659.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes MGAS2096]
          Length = 208

 Score = 76.4 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 23/182 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K+    I FD+E    ++ ND   +I++ AV+  D+ K   +F  ++            
Sbjct: 14  MKHLDTYIAFDLE---FNTVNDVSHVIQVSAVKY-DHHKEVDSFDTYVY-TDVPLQSFIN 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT   +   P    + + F +F  E     I +NA+  D+  +       N   L 
Sbjct: 69  GLTGITSNKIAAAPKVEEVMAAFKNFVGE--LPLIGYNAQKSDLPILAE-----NGLDLR 121

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               ID    A  +  +  N      L ++    GI       H +L D+ + + +Y   
Sbjct: 122 DQYQIDLFDEAYDRRSADLNGIANLRLQTVATFLGIK---GRGHNSLEDARMTAAIYKSF 178

Query: 175 MV 176
           + 
Sbjct: 179 LE 180


>gi|251783306|ref|YP_002997611.1| DNA polymerase III subunit epsilon [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391938|dbj|BAH82397.1| DNA polymerase III subunit epsilon [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 199

 Score = 76.4 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 23/182 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K+    I FD+E    ++ ND   +I++ AV+  D+ K   +F  ++            
Sbjct: 5   MKHLDTYIAFDLE---FNTVNDVSHVIQVSAVKY-DHHKEVDSFDTYVY-TDVPLQSFIN 59

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT + +   P    + + F +F  E     I +NA+  D+  +       N   L 
Sbjct: 60  GLTGITSDKIAAAPKVEEVMAAFKNFVGE--LPLIGYNAQKSDLPILAE-----NGLDLR 112

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               ID    A  +  +  N      L ++    GI       H +L D+ + + +Y   
Sbjct: 113 DQYQIDLFDEAYDRRSADLNGIANLRLQTVATFLGIK---GRGHNSLEDARMTAAIYESF 169

Query: 175 MV 176
           + 
Sbjct: 170 LE 171


>gi|218885422|ref|YP_002434743.1| exonuclease RNase T and DNA polymerase III [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218756376|gb|ACL07275.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 267

 Score = 76.4 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 67/213 (31%), Gaps = 48/213 (22%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGI 65
           M  +  D E TGL+   D ++ +GAV L       + TF+  L P      PE + +HGI
Sbjct: 23  MVFVSLDCEMTGLNPARDDLLAVGAVVLRGMRLDLSATFRGLLRP-ACPVRPEGVPVHGI 81

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNA------------EWIAHNAKFDVGFINAELQRI 113
                      ++  +    +     A              +      D  F+ A  +R 
Sbjct: 82  LPGEAAHGDEAAAQLARLDAWLAGCAAVPGAGNGAEAPVVLLGWCLGLDEAFLAAGRKRA 141

Query: 114 NKDPLDPSRIIDTLSIARRK-------------------------------HPSSRNDLN 142
              P       D L + R                                  P    DL 
Sbjct: 142 GL-PARTHPRCDVLDLFRHVRARGVAAPSGQGAMPPSGASPLPSTHAALADIPLKDADLY 200

Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++ +  G+ +     H AL D+ + + V+ +++
Sbjct: 201 AVARALGVDV--HGAHDALGDACMCAQVFQRLV 231


>gi|19746791|ref|NP_607927.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes
           MGAS8232]
 gi|209560018|ref|YP_002286490.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes NZ131]
 gi|19749025|gb|AAL98426.1| putative DNA polymerase III epsilon subunit [Streptococcus pyogenes
           MGAS8232]
 gi|209541219|gb|ACI61795.1| Putative DNA polymerase III epsilon subunit [Streptococcus pyogenes
           NZ131]
          Length = 195

 Score = 76.4 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 23/182 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K+    I FD+E    ++ ND   +I++ AV+  D+ K   +F  ++            
Sbjct: 1   MKHLDTYIAFDLE---FNTVNDVSHVIQVSAVKY-DHHKEVDSFDTYVY-TDVPLQSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT + +   P    + + F +F  E     I +NA+  D+  +       N   L 
Sbjct: 56  GLTGITSDKIAAAPKVEEVMAAFKNFVGE--LPLIGYNAQKSDLPILAE-----NGLDLR 108

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               ID    A  +  +  N      L ++    GI       H +L D+ + + +Y   
Sbjct: 109 DQYQIDLFDEAYDRRSADLNGIANLRLQTVATFLGIK---GRGHNSLEDARMTAAIYKSF 165

Query: 175 MV 176
           + 
Sbjct: 166 LE 167


>gi|255596951|ref|XP_002536656.1| conserved hypothetical protein [Ricinus communis]
 gi|223518960|gb|EEF25726.1| conserved hypothetical protein [Ricinus communis]
          Length = 216

 Score = 76.4 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 71/196 (36%), Gaps = 9/196 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           +FD E TG    N  I E+    +   + +   +   + P     +P+A+K+ GIT   +
Sbjct: 23  IFDTEGTGFRGPNFGITEVACFTVAPNATSGVLYGHLINPE-ETITPQAVKITGITQAMV 81

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                +S  ++  +      +     ++A +D+  +     +            D  ++ 
Sbjct: 82  SGAELWSLRYAALFKQMAASHWIGGFNSATYDLHAVIDMNAKYGMPFEKFEYSFDVRTLH 141

Query: 131 RRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
            +   S     +L  +   YG+     S H A  D+ L  ++   ++       FG    
Sbjct: 142 HQLAASKSRAGNLVEIAALYGVK-PQGSLHRATADTILTVELLDAVIE-----TFGIDAV 195

Query: 189 EDRFFKEEKKTVPNIS 204
             R   ++K  V  ++
Sbjct: 196 LTRLLPKQKGAVDKLT 211


>gi|270000543|ref|NP_845863.2| exonuclease [Bacillus anthracis str. Ames]
 gi|269850303|gb|AAP27349.2| exonuclease family protein [Bacillus anthracis str. Ames]
          Length = 273

 Score = 76.4 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++     K    F   + P G + +    KL GIT + L     F  I  +F
Sbjct: 18  EIVDIGAVKIEASTMKVIGEFSELVKP-GARLTRHTTKLTGITKKDLIGVEKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIIDT---LSIARRKHPSSR 138
             F   +++ ++    + D  F++ +    + +       R ID    +  A  +     
Sbjct: 77  IRFIG-EDSIFVTWGKE-DYRFLSHDCTLHSVECPCMEKERRIDLQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L S  ++ G+    +  H AL D+   +++ +K
Sbjct: 135 PSLQSAVEQLGLIWEGKQ-HRALADAENTANILLK 168


>gi|296283456|ref|ZP_06861454.1| exonuclease, RNase T and DNA polymerase III [Citromicrobium
           bathyomarinum JL354]
          Length = 261

 Score = 76.4 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 73/220 (33%), Gaps = 33/220 (15%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRT----FQVFLCPNGRKNSPEALKLHGIT 66
            D+ETT LD     IIE+   +  + +          +  +L   G   +PE   + G+ 
Sbjct: 16  VDVETTSLDPATGEIIELAIELVWISHEGEVEAQLGPWS-WLNDPGEPLTPEISTITGLH 74

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           D+ L+ + +      +        +    AHNA+FDV +I+    R   +  D       
Sbjct: 75  DDDLRGQ-AIDD--RKVRALLGRAD-WLCAHNARFDVQWID----RRYPEFADKPWACSC 126

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---------------- 170
             IA             L  ++G+       H A  D   L  +                
Sbjct: 127 SEIAWADLGFEGRSQPFLLAQHGL---FGRAHRAGDDVWSLLQLLQQRRPDPDSLQVRSH 183

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
           + +++   +Q +     +   F  +++          R++
Sbjct: 184 FARLLEHAAQPSVKLSASGAPFAAKDELKARGYRWNARER 223


>gi|306826686|ref|ZP_07459989.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           pyogenes ATCC 10782]
 gi|304431134|gb|EFM34140.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           pyogenes ATCC 10782]
          Length = 208

 Score = 76.4 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 68/182 (37%), Gaps = 23/182 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K+    I FD+E    ++ ND   +I++ AV+  D+ K   +F  ++            
Sbjct: 14  MKHLDTYIAFDLE---FNTVNDVSHVIQVSAVKY-DHHKEVDSFDTYVY-TDVPLQSFIN 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT + +   P    + + F +F  E     I +NA+  D+  +           L 
Sbjct: 69  GLTGITSDKIAAAPKVEEVMAAFKNFVGE--LPLIGYNAQKSDLPILAE-----KGLDLR 121

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               ID    A  +  +  N      L ++    GI       H +L D+ + + +Y   
Sbjct: 122 DQYQIDLFDEAYDRRSADLNGIANLRLQTVATFLGIK---GRGHNSLEDARMTAAIYESF 178

Query: 175 MV 176
           + 
Sbjct: 179 LE 180


>gi|228916151|ref|ZP_04079721.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228934812|ref|ZP_04097643.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|229123054|ref|ZP_04252261.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           95/8201]
 gi|228660348|gb|EEL15981.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           95/8201]
 gi|228824712|gb|EEM70513.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228843349|gb|EEM88427.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 273

 Score = 76.4 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++     K    F   + P G + +    KL GIT + L     F  I  +F
Sbjct: 18  EIVDIGAVKIEASTMKVIGEFSELVKP-GARLTRHTTKLTGITKKDLIGVEKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIIDT---LSIARRKHPSSR 138
             F   +++ ++    + D  F++ +    + +       R ID    +  A  +     
Sbjct: 77  IRFIG-EDSIFVTWGKE-DYRFLSHDCTLHSVECPCMEKERRIDLQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L S  ++ G+    +  H AL D+   +++ +K
Sbjct: 135 PSLQSAVEQLGLIWEGKQ-HRALADAENTANILLK 168


>gi|261335679|emb|CBH18673.1| exonuclease, putative [Trypanosoma brucei gambiense DAL972]
          Length = 366

 Score = 76.4 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 93  EWIAHNAKFDVGFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150
             IAHNA FD  F+     R   +      S +  T+S+ R  +P    +L   C   GI
Sbjct: 264 PVIAHNAAFDRNFLYQSALRNGWEVVWDKQSPLTCTMSMFRALYPECPTNLTKACSLAGI 323

Query: 151 TISHRS-KHGALLDSHLLSDVYIKMMVGGSQ 180
             + R  +H AL D+ L   ++I +      
Sbjct: 324 DAAGREDRHDALQDAQLCGHLFIYLTEAWKS 354



 Score = 74.9 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVE-------LLDYSKTNRTFQVFLCPNGRKN 55
           R   +  +  D+ETTG+    D II I  VE          +  + R+F   + P  +K 
Sbjct: 97  RLQPLSAVCIDVETTGIAPTKDEIISIAVVELLFGAAGHNQWVLSGRSFHRLVKPT-KKV 155

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE 89
           S  A ++H +T + L+ +P F++I  +   F ++
Sbjct: 156 SSSAYRVHKLTSKVLERQPPFAAILPDLAAFLSD 189


>gi|74026182|ref|XP_829657.1| exonuclease [Trypanosoma brucei TREU927]
 gi|70835043|gb|EAN80545.1| exonuclease, putative [Trypanosoma brucei]
          Length = 366

 Score = 76.4 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 93  EWIAHNAKFDVGFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150
             IAHNA FD  F+     R   +      S +  T+S+ R  +P    +L   C   GI
Sbjct: 264 PVIAHNAAFDRNFLYQSALRNGWEVVWDKQSPLTCTMSMFRALYPECPTNLTKACSLAGI 323

Query: 151 TISHRS-KHGALLDSHLLSDVYIKMMVGGSQ 180
             + R  +H AL D+ L   ++I +      
Sbjct: 324 DAAGREDRHDALQDAQLCGHLFIYLTEAWKS 354



 Score = 75.6 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVE-------LLDYSKTNRTFQVFLCPNGRKN 55
           R   +  +  D+ETTG+    D II I  VE          +  + R+F   + P  +K 
Sbjct: 97  RLQPLSAVCIDVETTGIAPTKDEIISIAVVELLFGAAGHNQWELSGRSFHRLVKPT-KKV 155

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE 89
           S  A ++H +T + L+ +P F++I  +   F ++
Sbjct: 156 SSSAYRVHKLTSKVLERQPPFAAILPDLAAFLSD 189


>gi|160689324|gb|ABX45520.1| polymerase C [Bacillus subtilis]
 gi|160689326|gb|ABX45521.1| polymerase C [Bacillus subtilis]
 gi|160689344|gb|ABX45530.1| polymerase C [Bacillus subtilis]
 gi|160689364|gb|ABX45540.1| polymerase C [Bacillus subtilis]
 gi|160689372|gb|ABX45544.1| polymerase C [Bacillus subtilis]
 gi|160689380|gb|ABX45548.1| polymerase C [Bacillus subtilis]
 gi|160689382|gb|ABX45549.1| polymerase C [Bacillus subtilis]
 gi|160689384|gb|ABX45550.1| polymerase C [Bacillus subtilis]
 gi|160689386|gb|ABX45551.1| polymerase C [Bacillus subtilis]
 gi|160689400|gb|ABX45558.1| polymerase C [Bacillus subtilis]
 gi|160689402|gb|ABX45559.1| polymerase C [Bacillus subtilis]
 gi|160689416|gb|ABX45566.1| polymerase C [Bacillus subtilis]
 gi|160689418|gb|ABX45567.1| polymerase C [Bacillus subtilis]
 gi|160689420|gb|ABX45568.1| polymerase C [Bacillus subtilis]
 gi|160689424|gb|ABX45570.1| polymerase C [Bacillus subtilis]
 gi|160689438|gb|ABX45577.1| polymerase C [Bacillus subtilis]
 gi|160689442|gb|ABX45579.1| polymerase C [Bacillus subtilis]
 gi|160689448|gb|ABX45582.1| polymerase C [Bacillus subtilis]
 gi|160689456|gb|ABX45586.1| polymerase C [Bacillus subtilis]
 gi|160689458|gb|ABX45587.1| polymerase C [Bacillus subtilis]
          Length = 259

 Score = 76.4 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           D+GF+N   +++ +     + +IDTL + R  +P    + LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNVAYKKLLEVDKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+   + + +KM+   ++  I +  + NE+
Sbjct: 59  IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90


>gi|289165197|ref|YP_003455335.1| excinuclease abc, subunit c [Legionella longbeachae NSW150]
 gi|288858370|emb|CBJ12238.1| putative excinuclease abc, subunit c [Legionella longbeachae
           NSW150]
          Length = 518

 Score = 76.4 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 73/185 (39%), Gaps = 17/185 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ----VFLCPNGRKNS 56
           MI  ++ + ++ D +TTG+      +++IG    +    T   F+        P      
Sbjct: 1   MINLSQKKILILDCQTTGMHPSTGSLLQIGW--SIVAPSTLHEFEIEKWTLKLPKEEAIP 58

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN--AEWIAHNAKFDVGFINAELQRIN 114
            +  K+  +TDE LK       +F +      E       +AH A+F+  F+        
Sbjct: 59  SKIKKMLHLTDEDLKHSVEPKIVFEKLQSVLKELGPEPIVLAHYAQFENSFLKQFYLEQR 118

Query: 115 KDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSK---HGALLDSHLLSDV 170
           +      +++ T  IA+R  P    ++L ++   +    S +++   H       +   V
Sbjct: 119 QTDELNFKLLCTQKIAKRLLPHLPSHNLKAIAGYFKWPNSPKNEINSH-----VSMTIHV 173

Query: 171 YIKMM 175
           +++++
Sbjct: 174 WLQLL 178


>gi|227502443|ref|ZP_03932492.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49725]
 gi|306835006|ref|ZP_07468054.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
 gi|227076812|gb|EEI14775.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49725]
 gi|304569114|gb|EFM44631.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
          Length = 479

 Score = 76.4 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 5/117 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K   +   ++TTG+     RI+ I AV   +     + F   L P+          LHG+
Sbjct: 110 KHPYVALTLQTTGIHPSTGRIVTIDAVAFDNAGDIGQRFHAVLKPD---IDAGPHHLHGL 166

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           T   ++  P+FS I        + +    + H+  +  GFI AE +R        +R
Sbjct: 167 TVADIEQAPAFSRILKSLDKLIDGR--TLVVHDIPYTWGFIVAEARRAMMTAARQNR 221


>gi|330811421|ref|YP_004355883.1| exodeoxyribonuclease I [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379529|gb|AEA70879.1| Exodeoxyribonuclease I [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 477

 Score = 76.4 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 62/195 (31%), Gaps = 25/195 (12%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ + DR +++  +    + ++ +    ++  P+      P A  + GIT   L
Sbjct: 8   DYETTGINPRCDRPLQVAGIRTDFELNEIDEPVNLYCRPSDDILPHPAACAITGITPTCL 67

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +K  S +   +               +N  +FD       L R   DP           
Sbjct: 68  AEKGLSEADFMTRVHGQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREWQGGNSR 127

Query: 124 ---IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    GI   H   H AL D       
Sbjct: 128 WDLIDLVRAAYALRPQGIVWPQEDGRVTLKLERLTAANGID--HGQAHDALSDVRAT-IA 184

Query: 171 YIKMMVGGSQINFGF 185
             +++       + +
Sbjct: 185 LARLIRQQQPRLYDW 199


>gi|284005763|ref|YP_003391582.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
           74]
 gi|283820947|gb|ADB42783.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
           74]
          Length = 193

 Score = 76.4 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 62/183 (33%), Gaps = 20/183 (10%)

Query: 7   MRKIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           M  ++ D ET GL               R+I +      +  K        + P+G + +
Sbjct: 1   MTYLIIDTETNGLPQSYHLPVTDLTNWPRLISVAWGLYDEEGKELCRHYAIVKPDGYRWN 60

Query: 57  PEALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             A ++H IT E  + K      + ++        +A W+ HN   D G I AE  R  +
Sbjct: 61  KVAQQIHRITPEQAETKGQPLDDVLNQLCPAMERADA-WVGHNIDLDYGVIGAEFIRAEQ 119

Query: 116 D------PLDPSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                        ++ T+ ++ +  P      L+ L +        +  H A  D     
Sbjct: 120 RQPGRVGEFPARPVLCTMDVSAKVTPNREPVRLDELYQLL-TGKKMKGMHDASADMLATV 178

Query: 169 DVY 171
             +
Sbjct: 179 RCF 181


>gi|118595061|ref|ZP_01552408.1| putative DNA exonuclease X [Methylophilales bacterium HTCC2181]
 gi|118440839|gb|EAV47466.1| putative DNA exonuclease X [Methylophilales bacterium HTCC2181]
          Length = 220

 Score = 76.4 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 79/221 (35%), Gaps = 31/221 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           ++FD ETTG +  +  +IE   +E+ D    +   +F     P G+     AL  H I D
Sbjct: 5   LIFDTETTGRN--DPVLIEAAWIEIRDIANFELGTSFCERFNP-GKPIELGALATHHIYD 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D P      S F           I HN  +D   ++              + I TL
Sbjct: 62  EELVDCPP----ASSFA--LPTPCEYLIGHNIDYDWNVVSQ----------PSLKRICTL 105

Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH---RSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++AR+  P+      ++L        +    ++ H A  D  + + +  ++      +  
Sbjct: 106 ALARKVWPNIDAYSQSALVYYLDRNNAKSILKNAHSAEADVMICASILKQLC-----LTL 160

Query: 184 GFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKEELDE 223
              + E  +   E+  +P++    K        I  +    
Sbjct: 161 KVTSMEQLWTLSEEARIPSVMPFGKHKGEPIAEIPMDYKRW 201


>gi|227329384|ref|ZP_03833408.1| exonuclease I [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 475

 Score = 76.4 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 65/197 (32%), Gaps = 28/197 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M  K +    + D ET G     DR  +   V   +D++       ++  P+      PE
Sbjct: 1   MAEKTQPTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPSDDYLPEPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A+ + GIT +  L    + +    +  + F+      + +N  +FD         R   D
Sbjct: 61  AVMITGITPQVALAKGVNEAEFARQIHEAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L K  GI  +H   
Sbjct: 121 PYAYSWQNGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGI--AHEQA 178

Query: 158 HGALLDSHLL---SDVY 171
           H A+ D +     + ++
Sbjct: 179 HDAMSDVYATIAMAKLF 195


>gi|298253384|ref|ZP_06977176.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis 5-1]
 gi|297532779|gb|EFH71665.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis 5-1]
          Length = 261

 Score = 76.4 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 70/182 (38%), Gaps = 20/182 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG +   D I+    V    + + T      +L    +  +P+A +++G TDE+L
Sbjct: 34  FDTETTGANIGKDAIVSATLVLRNPELAHTGDVVSTWLINPHQPMNPKASEVNGFTDEYL 93

Query: 71  KD---KPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-- 124
           K+   +P       +        +N   +A+NA FD+  +  +L+  +   L+       
Sbjct: 94  KEHGGEPEEELEFLARAVSMAQAKNIPLLAYNAPFDIAMLRHDLKHWHLTALEERATCSI 153

Query: 125 -----------DTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                      D L I R     S +  L    + YG+       H A  D+    D+  
Sbjct: 154 HALNANDILTVDPLVIDRAVSRRSGKRTLTITSQFYGVE-PIGDFHDATADTVAALDLIA 212

Query: 173 KM 174
            M
Sbjct: 213 PM 214


>gi|229092500|ref|ZP_04223657.1| exonuclease [Bacillus cereus Rock3-42]
 gi|228690905|gb|EEL44679.1| exonuclease [Bacillus cereus Rock3-42]
          Length = 205

 Score = 76.0 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++     K    F   + P G + +    KL GIT + L     F  I  +F
Sbjct: 18  EIVDIGAVKIEASTMKVIGEFSELVKP-GARLTRHTTKLTGITKKDLIGVEKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIIDT---LSIARRKHPSSR 138
             F   +++ ++    + D  F++ +    + +       R ID    +  A  +     
Sbjct: 77  IRFIG-EDSIFVTWGKE-DYRFLSHDCTLHSVECPCMEKERRIDLQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L S  ++ G+    +  H AL D+   +++ +K
Sbjct: 135 PSLQSAVEQLGLIWEGKQ-HRALADAENTANILLK 168


>gi|15675683|ref|NP_269857.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes M1 GAS]
 gi|13622898|gb|AAK34578.1| putative DNA polymerase III epsilon subunit [Streptococcus pyogenes
           M1 GAS]
          Length = 208

 Score = 76.0 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 70/182 (38%), Gaps = 23/182 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K+    I FD+E    ++ ND   II++ AV+  D+ K   +F  ++            
Sbjct: 14  MKHLDTYIAFDLE---FNTVNDVSHIIQVSAVKY-DHHKEVDSFDTYVY-TDVPLQSFIN 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT + +  +P    + + F +F  E     I +NA+  D+  +       N   L 
Sbjct: 69  GLTGITSDKIAAEPKVEEVMAAFKNFVGE--LPLIGYNAQKSDLPILAE-----NGLDLR 121

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               ID    A  +  +  N      L ++    GI       H +L D+ + + +Y   
Sbjct: 122 DQYQIDLFDEAYDRRSADLNGIANLRLQTVATFLGIK---GRGHNSLEDARMTAVIYKSF 178

Query: 175 MV 176
           + 
Sbjct: 179 LE 180


>gi|283782956|ref|YP_003373710.1| exonuclease [Gardnerella vaginalis 409-05]
 gi|283441223|gb|ADB13689.1| exonuclease [Gardnerella vaginalis 409-05]
          Length = 259

 Score = 76.0 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 70/182 (38%), Gaps = 20/182 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETTG +   D I+    V    + + T      +L    +  +P+A +++G TDE+L
Sbjct: 32  FDTETTGANIGKDAIVSATLVLRNPELAHTGDVVSTWLINPHQPMNPKASEVNGFTDEYL 91

Query: 71  KD---KPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-- 124
           K+   +P       +        +N   +A+NA FD+  +  +L+  +   L+       
Sbjct: 92  KEHGGEPEEELEFLARAVSMAQAKNIPLLAYNAPFDIAMLRHDLKHWHLTALEERATCPI 151

Query: 125 -----------DTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                      D L I R     S +  L    + YG+       H A  D+    D+  
Sbjct: 152 HALNANDILTVDPLVIDRAVSRRSGKRTLTITSQFYGVE-PIGDFHDATADTVAALDLIA 210

Query: 173 KM 174
            M
Sbjct: 211 PM 212


>gi|260588886|ref|ZP_05854799.1| exonuclease family protein [Blautia hansenii DSM 20583]
 gi|260540665|gb|EEX21234.1| exonuclease family protein [Blautia hansenii DSM 20583]
          Length = 320

 Score = 76.0 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 70/181 (38%), Gaps = 16/181 (8%)

Query: 7   MRKIVFDIETT----GLDSKND----RIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSP 57
           M  IVFD+E      G + +N      IIEIGAV+L +      +FQ  + P    +   
Sbjct: 1   MNYIVFDLEWNQCPYGKEKENKKLPFEIIEIGAVKLDENRNIVDSFQEIIKPVVYHRLHF 60

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              ++ GIT   L++   F +   +F ++    + ++       D+  +   L+      
Sbjct: 61  RTKEILGITSNRLEEGIPFKAAVKKFLEWCGT-DVKFCTW-GSADLVELQRNLKYYRMLF 118

Query: 118 LDPSRII--DTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L    +   D   +    + + +    L        +     + H AL D+H  +++  K
Sbjct: 119 LLKGPVFYYDVQKLFGLIYENEKTTRSLEYAIDFLKMD-KGDTFHQALNDAHYTAEILKK 177

Query: 174 M 174
           +
Sbjct: 178 I 178


>gi|94995036|ref|YP_603134.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes
           MGAS10750]
 gi|94548544|gb|ABF38590.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes
           MGAS10750]
          Length = 208

 Score = 76.0 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 23/176 (13%)

Query: 9   KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            I FD+E    ++ ND   +I++ AV+  D+ K   +F  ++             L GIT
Sbjct: 20  YIAFDLE---FNTVNDVSHVIQVSAVKY-DHHKEVDSFDTYVY-TDVPLQSFINGLTGIT 74

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIID 125
            + +   P    + + F +F  E     I +NA+  D+  +       N   L     ID
Sbjct: 75  SDKIAAAPKVEEVMAAFKNFVGE--LPLIGYNAQKSDLPILAE-----NGLDLRDQYQID 127

Query: 126 TLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
               A  +  +  N      L ++    GI       H +L D+ + + +Y   + 
Sbjct: 128 LFDEAYDRRSADLNGIANLRLQTVATFLGIK---GRGHNSLEDARMTAAIYKSFLE 180


>gi|26990938|ref|NP_746363.1| exonuclease [Pseudomonas putida KT2440]
 gi|24985960|gb|AAN69827.1|AE016622_4 exonuclease [Pseudomonas putida KT2440]
          Length = 183

 Score = 76.0 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 12/173 (6%)

Query: 9   KIVFDIETT---GLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E T   G     +  +IEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLVIDLEATTDDGGWPVTEMEVIEIGASLVTREGREVDHFQRFVKPRRRPQLTPFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            I+   +     F  +++ F  +      Q   W++    +D   ++ E Q+ + D L  
Sbjct: 64  HISQADVDSAAPFREVWASFERWLGHHRGQLQAWVSW-GDYDRQQLHQEWQQYSLDSLLR 122

Query: 121 SRIIDTL--SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +     L    A+ +H      LN   +  G+    +  H AL D+   + + 
Sbjct: 123 TLPHINLKQRFAKARHLQRPTGLNGALQLAGMHFCGQQ-HRALEDARNTARLL 174


>gi|302531526|ref|ZP_07283868.1| predicted protein [Streptomyces sp. AA4]
 gi|302440421|gb|EFL12237.1| predicted protein [Streptomyces sp. AA4]
          Length = 524

 Score = 76.0 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 68/201 (33%), Gaps = 20/201 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D++TTGL     R++E+ A+           F   +  +  + +P     H IT  
Sbjct: 77  FTALDVKTTGLH--TGRVLEVAAIRFRGDGTFLGEFATVVAADASRRNP-----HRITAA 129

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L D P+ S I    ++    Q A  +AH+     G +    Q      L     I    
Sbjct: 130 ELADAPALSGILGRLFELC--QGAVLVAHDLSSVEGLLTEIGQL--GVRLPRLPAISLKD 185

Query: 129 IARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
            A+   P     L ++ + +GI          A   +   +   + ++        G + 
Sbjct: 186 TAQAALPLPNYRLATIARAFGIEDFPGYLAEPA---ARACAQAMLALVG-----THGLRL 237

Query: 188 NEDRFFKEEKKTVPNISLLKR 208
            +   F E      N + L+R
Sbjct: 238 AQPVRFPELPWYAGNAATLRR 258


>gi|167034808|ref|YP_001670039.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           GB-1]
 gi|166861296|gb|ABY99703.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           GB-1]
          Length = 183

 Score = 76.0 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 12/173 (6%)

Query: 9   KIVFDIETT---GLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E T   G     +  IIEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLVIDLEATTDEGGWPVTEMEIIEIGASLVTREGREVDHFQRFVRPRRRPQLTPFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            I+   +     F  +++    +      Q   W++    +D   ++ E Q+   D L  
Sbjct: 64  HISQADVDSAAPFREVWANVERWLGHHRGQLQAWVSW-GDYDRQQLHQEWQQHGLDSLLR 122

Query: 121 SRIIDTL--SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +     L    A+ +H      LN   +  G+    +  H AL D+   + + 
Sbjct: 123 TLPHINLKQRFAKARHLQRPTGLNGALQLAGMHFCGQQ-HRALEDARNTARLL 174


>gi|310641105|ref|YP_003945863.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2]
 gi|309246055|gb|ADO55622.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2]
          Length = 177

 Score = 76.0 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 65/173 (37%), Gaps = 7/173 (4%)

Query: 7   MRKIVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKL 62
           M  I+FD+E T  ++   R   IIEIGAV++    +    FQ F+ P      S     L
Sbjct: 1   MNYIIFDLEATCWENDRTRQNEIIEIGAVKVNVNLEIIGEFQTFIKPKLNPQLSDFCKSL 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             I+ + +     F     +F ++  ++     +    +D   +  + +           
Sbjct: 61  TSISQQDIDMATYFPQAIYKFQEWIGKEPYYLCSW-GFYDKSQLKKDCELHKIRTEWIRN 119

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            I       +   + R   +    K   + +   + H  + D+  +S +++K+
Sbjct: 120 HISIKHQHGKLIGNDRGVGMERALKMLNLPLEG-THHRGIDDAKNISRIFVKI 171


>gi|160689454|gb|ABX45585.1| polymerase C [Bacillus pumilus]
          Length = 259

 Score = 76.0 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           D+GF+N   +R+ K     + +IDTL + R  +P    + LN+LCK++ I ++    H A
Sbjct: 1   DMGFLNTAYKRLLKTDKASNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190
           + D+     + +KM+   ++  I +  + NE+
Sbjct: 59  IYDAEATGYLMLKMLKDAAEKDIAYHDQLNEN 90


>gi|284919774|emb|CAX65551.1| putative exonuclease I [Enterobacter hormaechei]
          Length = 502

 Score = 76.0 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 63/197 (31%), Gaps = 36/197 (18%)

Query: 5   NKMRKIVFDI-----------ETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNG 52
           N+MR +V D            ET G     DR  +  A+   D ++        +  P  
Sbjct: 23  NRMRLLVSDSAARPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPAD 82

Query: 53  RKNS-PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAE 109
                P A+ + GIT +  +DK  S +       D F   N   + +N  +FD       
Sbjct: 83  DYLPQPGAVMVTGITPQEARDKGVSEAEFARRIHDLFTVPNTCVVGYNNIRFDDEVTRNI 142

Query: 110 LQRINKDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGI 150
             R   DP   S          +D + +     P                L  L +  GI
Sbjct: 143 FYRNFYDPYAWSWQNRNSRWDLLDIMRVCYALRPEGINWPENDDGLPSFRLEHLTRANGI 202

Query: 151 TISHRSKHGALLDSHLL 167
              H + H A+ D +  
Sbjct: 203 E--HSNAHDAMADVYAT 217


>gi|319951547|ref|ZP_08025351.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4]
 gi|319434795|gb|EFV90111.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4]
          Length = 231

 Score = 76.0 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 63/152 (41%), Gaps = 13/152 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++ R + FD+ETTG D +   ++    +E+    K  R +   L   G +    A  +HG
Sbjct: 12  DRNRLLAFDLETTGPDPRTAHVVTSALIEIDGPHKRERNW---LADPGIEIPEGATDVHG 68

Query: 65  ITDEFLKDKP-SFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           IT    ++     + + +E  +   +        +  NA +D+  +    +R +      
Sbjct: 69  ITTAHAREHGRPHAEVIAETVEAIRQGWRDGRTLVVFNACYDLTIL----RRWHPTFEVA 124

Query: 121 SRIIDTLSIARRKHP--SSRNDLNSLCKRYGI 150
             +ID   + R   P    +  L +LC ++G+
Sbjct: 125 GPVIDPYVVDRAVDPFRKGKRTLEALCGQHGV 156


>gi|241763009|ref|ZP_04761071.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
 gi|241367961|gb|EER62180.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
          Length = 179

 Score = 76.0 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 28/190 (14%)

Query: 7   MR--KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           MR   I  D+ET+G       ++ +GA  + D  K   TF V + P  R   PEAL + G
Sbjct: 1   MREHYISVDVETSGPIPGEFSMLSLGASVVDDDGK---TFHVQIKPLNRNAVPEALAVTG 57

Query: 65  ITDEFLKDKPSFSSIFSE-FWDFFNEQN-----AEWIAHNAKFDVGFINAELQR-INKDP 117
           ++ E L+   +  +I  E F  +            ++  NA FD  F+N    R    +P
Sbjct: 58  LSLETLECHGTEPAIAMENFASWLEGVRPNGIKPVFVGLNAPFDWSFVNYYFVRFCGSNP 117

Query: 118 LDPSRIIDTLSIARRKHPS------SRNDLNSLCKRYGITISHRS-KHGALLDSHLLSDV 170
                   T    +  +        S+   + + KR    +  R   H AL D+   +++
Sbjct: 118 FGY-----TALDIKAMYMGATGCTWSQTTSSQMAKRL---LPKRKGTHNALDDALYQAEL 169

Query: 171 YIKMMVGGSQ 180
           + +++ G ++
Sbjct: 170 F-RLVRGLTR 178


>gi|331083424|ref|ZP_08332536.1| hypothetical protein HMPREF0992_01460 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404117|gb|EGG83665.1| hypothetical protein HMPREF0992_01460 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 320

 Score = 76.0 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 16/181 (8%)

Query: 7   MRKIVFDIETT----GLDSKND----RIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSP 57
           M  IVFD+E      G + +N      IIEIGAV+L +      +FQ  + P    +   
Sbjct: 1   MNYIVFDLEWNQCPYGKEKENKKLPFEIIEIGAVKLDENRNIVDSFQEIIKPVVYHRLHF 60

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              ++ GIT   L++  SF +   +F ++    + ++       D+  +   L+      
Sbjct: 61  RTKEILGITSNRLEEGISFKAAVKKFLEWCGT-DVKFCTW-GSADLVELQRNLKYYRMLF 118

Query: 118 LDPSRII--DTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L    +   D   +    + + +    L        +     + H AL D+H  +++  K
Sbjct: 119 LLKGPVFYYDVQKLFGLIYENEKTTRSLEYAIDFLKMD-KGDTFHQALNDAHYTAEILKK 177

Query: 174 M 174
           +
Sbjct: 178 I 178


>gi|145588884|ref|YP_001155481.1| exonuclease, RNase T and DNA polymerase III [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047290|gb|ABP33917.1| Exonuclease, RNase T and DNA polymerase III [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 218

 Score = 76.0 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 81/221 (36%), Gaps = 31/221 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           I+FD+E T  D  N  IIE  +  V  L   +    +     P G+  S  AL  H I D
Sbjct: 5   IIFDVEAT--DKNNAVIIEAASLDVTSLKPFEVGNPWVQRYNP-GKPISLGALATHHILD 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L + P      S F           I HN  FD   I +             + I TL
Sbjct: 62  EELVNCP----ASSSFR--LPAGTKYLIGHNIDFDWVAIGS----------PEVKRICTL 105

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISH---RSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           ++AR   P    +  ++L   +    +    R+ H AL D  + S +  +++     I+ 
Sbjct: 106 ALARSLWPDLDSHTQSALLYYFERDTARDQLRNAHSALADVWVCSKIVAQIINQLHPISL 165

Query: 184 GFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKEELDE 223
                +  +   EK  +P +    K    L +++  +    
Sbjct: 166 -----DALWEMSEKARIPTVMPYGKHKGELISQVPTDYKQW 201


>gi|3080450|emb|CAA18767.1| hypothetical protein [Arabidopsis thaliana]
 gi|7270965|emb|CAB80644.1| hypothetical protein [Arabidopsis thaliana]
          Length = 236

 Score = 76.0 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 82/215 (38%), Gaps = 16/215 (7%)

Query: 9   KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNG-RKNSPEALKLHG 64
            + FD+ET   +       I+E GA+ +         +F   + P      S  + +  G
Sbjct: 10  IVFFDLETNVPNKAGQHFHILEFGAIIVCPKKLEELESFTTLIQPKDLSVVSIRSSRSDG 69

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRI 123
           IT   + + PSF  +  +     N +   W  HN  +FD   I      I K   +PS I
Sbjct: 70  ITRAKVTNAPSFEDVAEKIHGLLNGR--IWAGHNIRRFDCVRIKEAFAEIGKAAPEPSGI 127

Query: 124 IDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ID+L +   K    +    + SL   +G+ +    KH +L D  +  +V        + +
Sbjct: 128 IDSLGLLSDKFGKRAGNMKMASLAAYFGLGV---QKHRSLDDVRMNLEVLKH----CATV 180

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            F   T  +    +   +   ++  +R+  +  R 
Sbjct: 181 LFLESTLPNHLEGKWHTSSKIMTRSRRNYQIAQRA 215


>gi|291561739|emb|CBL40538.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [butyrate-producing bacterium SS3/4]
          Length = 324

 Score = 75.6 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 66/180 (36%), Gaps = 17/180 (9%)

Query: 9   KIVFDIE----TTGLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEA 59
            IVFD+E      G ++  +R    I EIGAV+L +  +    F   + P   R+     
Sbjct: 4   FIVFDLEWNQNPGGKEASVERLPFEIFEIGAVKLNEEREKVAEFHRIIRPCVYRQMHRII 63

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KD 116
            ++  ++ E L +D   F+++  +F  +   ++  +       D+  +   +        
Sbjct: 64  SEVTHVSIEELERDGEPFAAVMEDFLKWCG-EDCIFCTW-GSMDLTELQRNMVYHGMTIP 121

Query: 117 PLDPSRIIDTLSIARRKHPSS--RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              P    D   +    +     R  L+   + + + +     H AL D+     V   M
Sbjct: 122 FPKPFLFYDVQKLYSLCYQDGKARISLDEAVESFALDVDA-PFHRALGDAEYTGRVLQAM 180


>gi|187779049|ref|ZP_02995522.1| hypothetical protein CLOSPO_02644 [Clostridium sporogenes ATCC
           15579]
 gi|187772674|gb|EDU36476.1| hypothetical protein CLOSPO_02644 [Clostridium sporogenes ATCC
           15579]
          Length = 256

 Score = 75.6 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 71/184 (38%), Gaps = 20/184 (10%)

Query: 7   MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNS 56
           M  I+FD+E    +   +          II+IGA++L +   T  TF   + P      +
Sbjct: 1   MNYIIFDLE---FNQGYNNHFEIKCPFEIIQIGAIKLNEGFTTIDTFNALVKPEIYSDLN 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQ 111
           P    L  +T + L     F  ++ +F +F N++N +             ++       +
Sbjct: 58  PFVKNLTNLTMDSLNKARPFRDVYKDFLEFLNKENKDKNIFCIWGMTDMKELFRNIVYYE 117

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              K        +   +     +P S N  L++  + + IT  +   H A  D+   ++V
Sbjct: 118 LDTKSIPKEYINVQAYTGKYLNYPKSVNIGLSNAVELFHIT-KNNDFHNAFNDAFYTTEV 176

Query: 171 YIKM 174
           + K+
Sbjct: 177 FKKI 180


>gi|152980617|ref|YP_001352252.1| exonuclease I [Janthinobacterium sp. Marseille]
 gi|151280694|gb|ABR89104.1| exodeoxyribonuclease I [Janthinobacterium sp. Marseille]
          Length = 476

 Score = 75.6 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 62/178 (34%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G+  + DR  +  A+    + ++      ++  P N     P++  + GIT +  
Sbjct: 10  DYETFGIQPRRDRPAQFAAIRTDAELNEIGEPIMLYCKPANDFLPDPQSCLITGITPQTC 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           L+         +E     ++     + +N  +FD       F    +    ++  +    
Sbjct: 70  LERGVPEHEFAAEIEKALSQTGTIGVGYNTIRFDDEVTRFMFWRNLIDPYAREWQNSCGR 129

Query: 124 IDTLSIARR------------KHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLL 167
            D L + R             KHP  R    L  L    GI  +H + H AL D    
Sbjct: 130 WDILDVVRTAYALRPEGINWPKHPDGRPSFRLEQLTAENGI--AHEAAHDALSDVRAT 185


>gi|328865534|gb|EGG13920.1| hypothetical protein DFA_11681 [Dictyostelium fasciculatum]
          Length = 383

 Score = 75.6 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 16/136 (11%)

Query: 9   KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            + FD ETTGL  S   +IIE+  + + D      +F   + P        A K HG+T+
Sbjct: 81  ILFFDTETTGLATSTTSQIIELSLINIKDG----DSFYRKVNPTI-PIEDGATKKHGMTN 135

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNA-------EWIAHNAKFDVGFINAELQR---INKDP 117
           + L   P +  +  E   F ++            +AHN KFD   +   + +        
Sbjct: 136 QSLAGHPYWEDVEPELIQFLDKYCVGDTPVEIIIVAHNEKFDRHILATRIVKNMVTTLPT 195

Query: 118 LDPSRIIDTLSIARRK 133
           L   + +D+++I +  
Sbjct: 196 LPEIKFVDSINIFKHM 211


>gi|71911395|ref|YP_282945.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes
           MGAS5005]
 gi|71854177|gb|AAZ52200.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes MGAS5005]
          Length = 195

 Score = 75.6 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 70/182 (38%), Gaps = 23/182 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K+    I FD+E    ++ ND   II++ AV+  D+ K   +F  ++            
Sbjct: 1   MKHLDTYIAFDLE---FNTVNDVSHIIQVSAVKY-DHHKEVDSFDTYVY-TDVPLQSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT + +  +P    + + F +F  E     I +NA+  D+  +       N   L 
Sbjct: 56  GLTGITSDKIAAEPKVEEVMAAFKNFVGE--LPLIGYNAQKSDLPILAE-----NGLDLR 108

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               ID    A  +  +  N      L ++    GI       H +L D+ + + +Y   
Sbjct: 109 DQYQIDLFDEAYDRRSADLNGIANLRLQTVATFLGIK---GRGHNSLEDARMTAVIYKSF 165

Query: 175 MV 176
           + 
Sbjct: 166 LE 167


>gi|254524666|ref|ZP_05136721.1| exodeoxyribonuclease I [Stenotrophomonas sp. SKA14]
 gi|219722257|gb|EED40782.1| exodeoxyribonuclease I [Stenotrophomonas sp. SKA14]
          Length = 479

 Score = 75.6 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 66/189 (34%), Gaps = 28/189 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  A+    D ++       F+ P +    SP A  + GIT
Sbjct: 5   FLFYDLETFGQDPRRTRISQYAAIRTDADLNEIETPVSFFVRPADDLLPSPMATLVTGIT 64

Query: 67  D-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI- 123
             + + +  S +  F    +  +      + +N  +FD  FI   L R   DP +     
Sbjct: 65  PQQAMAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFIRYGLFRNFHDPYEREWRN 124

Query: 124 -------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                  +D L + R   P                L  L +   +       H AL D  
Sbjct: 125 GNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANNVR--EGDAHEALSDVR 182

Query: 166 LL---SDVY 171
                + ++
Sbjct: 183 ATIGMARLF 191


>gi|254429651|ref|ZP_05043358.1| exonuclease superfamily [Alcanivorax sp. DG881]
 gi|196195820|gb|EDX90779.1| exonuclease superfamily [Alcanivorax sp. DG881]
          Length = 215

 Score = 75.6 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 66/173 (38%), Gaps = 15/173 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGLDS+   ++ I AV + D     ++   V L P       + +++H +   
Sbjct: 46  VAIDCETTGLDSRTAELVSIAAVVIKDGRVLSSQGLDVKLMPPD-SLKEDTIRIHRLRPV 104

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTL 127
            L+   S              +    +     FDV  IN  L+  +  D  +    +  L
Sbjct: 105 DLEGGESVRDALDALLALVGNR--PLVGWCVAFDVAMINRYLRPLMGFDLPNDIIELSAL 162

Query: 128 SIARRKH------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              + ++      P  R   +++     + +  R  H A  D+   + +Y+++
Sbjct: 163 YQKKMRYWQPDVTPDLRF--DAMASALQVPVMER--HTARGDAVTSALMYLQL 211


>gi|154338964|ref|XP_001565704.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 499

 Score = 75.6 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 73/201 (36%), Gaps = 33/201 (16%)

Query: 6   KMRKIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEA 59
             R   FD+E TG      D   + I E+G    L     +  F   + P  GRK  P  
Sbjct: 87  PFRVFTFDMEFTGPPVFTADGPTEDITELGVYSPL----LDEVFSCLVQPVCGRKQGPGV 142

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKF-DVGFIN 107
            +L  ITD  L K+   F   +  F  F           +E+    ++H  K  DV  I 
Sbjct: 143 EELTHITDAMLAKEGIPFLEAWQRFLKFVQTPQPNEIPGSEERILLLSHGGKLADVSLIK 202

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPS---------SRNDLNSLCKRYGITISHRSKH 158
             L++ + +        DT+ + R  H               L  L +   I+ +  S H
Sbjct: 203 WTLEKFHMELPSSFVFGDTIHLIRDAHRRRPVTVDKHPPSWKLVDLVQWLHISPTL-SAH 261

Query: 159 GALLDSHLLSD-VYIKMMVGG 178
            A  D+ +  D +Y  ++  G
Sbjct: 262 RAGNDARMTWDALYHTLLRYG 282


>gi|261821314|ref|YP_003259420.1| exonuclease I [Pectobacterium wasabiae WPP163]
 gi|261605327|gb|ACX87813.1| Exodeoxyribonuclease I [Pectobacterium wasabiae WPP163]
          Length = 475

 Score = 75.6 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 64/197 (32%), Gaps = 28/197 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M  K +    + D ET G     DR  +   V   +D++       ++  P       PE
Sbjct: 1   MAEKTQPTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPTDDYLPEPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A+ + GIT +  L    + +    +  + F+      + +N  +FD         R   D
Sbjct: 61  AVMITGITPQIALAKGVNEAEFARQIHEAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L K  GI  +H   
Sbjct: 121 PYAYSWQHGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGI--AHEQA 178

Query: 158 HGALLDSHLL---SDVY 171
           H A+ D +     + ++
Sbjct: 179 HDAMSDVYATIAMAKLF 195


>gi|195977438|ref|YP_002122682.1| DNA polymerase III subunit epsilon [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225869233|ref|YP_002745181.1| exonuclease [Streptococcus equi subsp. zooepidemicus]
 gi|195974143|gb|ACG61669.1| DNA polymerase III polC-type [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225702509|emb|CAX00439.1| putative exonuclease [Streptococcus equi subsp. zooepidemicus]
          Length = 195

 Score = 75.6 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 67/176 (38%), Gaps = 23/176 (13%)

Query: 9   KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            I FD+E    ++ N+   II++ AV+   + + + +F  ++             L GIT
Sbjct: 7   YIAFDME---FNTVNEVSHIIQLSAVKWHKHQEVD-SFDSYVY-TAVPLQSFINGLTGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIID 125
            + +   P    + + F  F    +   I +NA+  D+  + A     N   L     +D
Sbjct: 62  SDKIVSAPKVDEVLAAFKQFVG--DMPLIGYNAQKSDLPILAA-----NGLDLSAQYAVD 114

Query: 126 TLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
               A  +  S  N      L ++    GI       H +L D+ + + VY   + 
Sbjct: 115 VFDEAYERRSSDLNGIANLRLQTVADFLGIK---GRGHNSLEDARMTARVYEAFVE 167


>gi|77460172|ref|YP_349679.1| exonuclease [Pseudomonas fluorescens Pf0-1]
 gi|77384175|gb|ABA75688.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 180

 Score = 75.6 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 62/172 (36%), Gaps = 10/172 (5%)

Query: 9   KIVFDIETT---GLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E T   G     +  IIEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLVIDLEATTDEGGWPVTEMEIIEIGATLVDRAGREQDHFQRFVKPTRRPLLTPFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPS 121
            IT   +      S ++  F  +  +        A    +D   +  E QR+  D     
Sbjct: 64  HITQANIDAAQPLSEVWPAFERWLGQHQTRLEGWASWGDYDRKQLLQEWQRLQLDSALSR 123

Query: 122 RIIDTL--SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                L    A+ +       LN   +  G+  + +  H AL D+   + + 
Sbjct: 124 VPHMNLKQRFAKARRLERPLGLNGALQLAGMQFTGQQ-HRALEDARNTARLL 174


>gi|240256240|ref|NP_195691.4| exonuclease/ nucleic acid binding [Arabidopsis thaliana]
 gi|332661722|gb|AEE87122.1| exonuclease/ nucleic acid binding protein [Arabidopsis thaliana]
          Length = 255

 Score = 75.6 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 82/215 (38%), Gaps = 16/215 (7%)

Query: 9   KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNG-RKNSPEALKLHG 64
            + FD+ET   +       I+E GA+ +         +F   + P      S  + +  G
Sbjct: 10  IVFFDLETNVPNKAGQHFHILEFGAIIVCPKKLEELESFTTLIQPKDLSVVSIRSSRSDG 69

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRI 123
           IT   + + PSF  +  +     N +   W  HN  +FD   I      I K   +PS I
Sbjct: 70  ITRAKVTNAPSFEDVAEKIHGLLNGR--IWAGHNIRRFDCVRIKEAFAEIGKAAPEPSGI 127

Query: 124 IDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           ID+L +   K    +    + SL   +G+ +    KH +L D  +  +V        + +
Sbjct: 128 IDSLGLLSDKFGKRAGNMKMASLAAYFGLGV---QKHRSLDDVRMNLEVLKH----CATV 180

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            F   T  +    +   +   ++  +R+  +  R 
Sbjct: 181 LFLESTLPNHLEGKWHTSSKIMTRSRRNYQIAQRA 215


>gi|213161997|ref|ZP_03347707.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
          Length = 114

 Score = 75.6 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 88  NEQNAEWIAHNAKFDVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLC 145
               A  +AHNA FD  F+ A  +R  + ++P  P    DT +++       +  L+  C
Sbjct: 10  GCSRAIMVAHNATFDHSFMMAAAERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKAC 67

Query: 146 KRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
              G+       H AL D+   + ++ +++    ++ 
Sbjct: 68  LAAGMEFDGEKAHSALYDTERTAVLFCEIVNRWKRLG 104


>gi|167945402|ref|ZP_02532476.1| exonuclase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 168

 Score = 75.6 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 5/125 (4%)

Query: 17  TGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDEFLKDKPS 75
           TGL  K D I+ IG V +        T +   +    ++    +  +H ITD+       
Sbjct: 6   TGLKPKQDSILSIGLVNIRALQIHLDTAWHRVIRVE-QQIPESSAVIHQITDDHAAAGIP 64

Query: 76  FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHP 135
                 +     +      +AH    +  F++A  QR+   P     IIDTL +A+R   
Sbjct: 65  LEEALPQLLRQLS--GKVMLAHYKSIEQNFLDAACQRLYGTPFII-PIIDTLELAQRLFA 121

Query: 136 SSRND 140
              + 
Sbjct: 122 QRNHS 126


>gi|225869816|ref|YP_002745763.1| exonuclease [Streptococcus equi subsp. equi 4047]
 gi|225699220|emb|CAW92500.1| putative exonuclease [Streptococcus equi subsp. equi 4047]
          Length = 195

 Score = 75.6 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 66/176 (37%), Gaps = 23/176 (13%)

Query: 9   KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            I FD+E    ++ N+   II++ AV+   + + + +F  ++             L GIT
Sbjct: 7   YIAFDME---FNTVNEVSHIIQLSAVKWHKHQEVD-SFDSYVY-TAVPLQSFINGLTGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIID 125
            + +   P    +   F  F    +   I +NA+  D+  + A     N   L     +D
Sbjct: 62  SDKIVSAPKVDEVLDAFKQFVG--DTPLIGYNAQKSDLPILAA-----NGLDLSAQYAVD 114

Query: 126 TLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
               A  +  S  N      L ++    GI       H +L D+ + + VY   + 
Sbjct: 115 VFDEAYERRSSDLNGIANLRLQTVADFLGIK---GRGHNSLEDARMTARVYEAFVE 167


>gi|213162305|ref|ZP_03348015.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 83

 Score = 75.6 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 158 HGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
           HGALLD+ +L++VY+ M  G + + F  +    R  ++ + T+  I + +  +      +
Sbjct: 2   HGALLDAQILAEVYLAMTGGQTSMTFAMEGETQR--QQGEATIQRI-VRQASRLRVVFAS 58

Query: 218 KEELDEHDKTI---QTLGKNAIWD 238
           +EEL  H+  +   Q  G + +W 
Sbjct: 59  EEELAAHESRLDLVQKKGGSCLWR 82


>gi|68346412|gb|AAY94018.1| exodeoxyribonuclease I [Pseudomonas fluorescens Pf-5]
          Length = 497

 Score = 75.6 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 58/177 (32%), Gaps = 24/177 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ + DR +++  +   L  ++ +    ++  P+      P A  + GIT   L
Sbjct: 30  DYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITGITPGRL 89

Query: 71  KDKPS-FSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++    +   +   +         + +N  +FD       L R   DP           
Sbjct: 90  AEQGLGEADFMTRVHEQLARPGTCGVGYNTLRFDDEMTRYSLYRNFFDPYAREWQGGNSR 149

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              ID +  A    P               L  L    GI   H   H AL D    
Sbjct: 150 WDLIDVVRTAYALRPQGIVWPEEQGQVSLKLERLTAANGID--HGQAHDALSDVRAT 204


>gi|83647678|ref|YP_436113.1| exonuclease I [Hahella chejuensis KCTC 2396]
 gi|83635721|gb|ABC31688.1| Exonuclease I [Hahella chejuensis KCTC 2396]
          Length = 483

 Score = 75.6 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 81/229 (35%), Gaps = 31/229 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDE-F 69
           D ET G D + DR  +   V   LD +   +   ++  P       PEA  + GIT +  
Sbjct: 9   DFETWGADPRRDRPSQFAGVRTDLDLNPIEKPLVMYCMPAEDVLPQPEACLITGITPQKA 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L +  S +       + F+      + +N+ +FD       L R   DP           
Sbjct: 69  LSEGVSEAEFIRLIHEQFSRPGTCVVGYNSIRFDDEVTRNTLYRNFYDPYSREWRNGNSR 128

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              ID + +     P                L  L K  G+  +H + H A+ D +    
Sbjct: 129 WDVIDMVRLTYAMRPDGINWPMNAEGVPSFRLEELTKANGV--THEAAHDAMSDVYAT-- 184

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
           + +  ++  +Q          R     KK +  +  ++R KPLF   +K
Sbjct: 185 IAVARLIKTAQPKLYDYVLGHR----NKKVLEGLVDIERMKPLFHVSSK 229


>gi|29566899|ref|NP_818464.1| gp164 [Mycobacterium phage Omega]
 gi|29425624|gb|AAN12806.1| gp164 [Mycobacterium phage Omega]
          Length = 178

 Score = 75.6 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 23/184 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS---PEALKLHGI 65
            IV D ET GL   N  ++EI AV      +T   F+V       + S   PEAL ++  
Sbjct: 5   IIVVDTETGGLGP-NAPVLEIAAV----NVETGEEFRVVPFVTAAQLSSCEPEALAINRF 59

Query: 66  TD-----EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +     + L+D     + F       +     +   N  FD   I    + +N +P   
Sbjct: 60  YERRVFADMLEDAEGNKNAFDWLRSMLD--GNVFAGSNPAFDAPLI---AKLLNGEPWHH 114

Query: 121 SR-IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            +  +++ +      P      LN +C+  G+       H AL D+   ++ + +++ G 
Sbjct: 115 RKLALESYAAGVLGLPLDELPGLNKVCEILGVENED--PHSALGDARATAECF-RILRGM 171

Query: 179 SQIN 182
           ++ N
Sbjct: 172 AEQN 175


>gi|266624851|ref|ZP_06117786.1| exonuclease family protein [Clostridium hathewayi DSM 13479]
 gi|288863268|gb|EFC95566.1| exonuclease family protein [Clostridium hathewayi DSM 13479]
          Length = 330

 Score = 75.6 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 63/182 (34%), Gaps = 21/182 (11%)

Query: 9   KIVFDIE----------TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSP 57
            IV D+E          T  +D     IIEIGAV L +  K    F+  + P        
Sbjct: 4   YIVLDLEWNQSPDGKEGT--IDHFPFEIIEIGAVRLDEERKEIGEFRRLIRPRVYPQMHY 61

Query: 58  EALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
              ++  +    L ++  +F ++  +F ++  + +  +       D+  +   +     +
Sbjct: 62  RISEVTHMDMAELERNGETFETVIRDFLEWCGD-DCIFCTW-GSMDLTELQRNMVYYGVE 119

Query: 117 -PLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            P D   +   +             +  L+   +  GI    R  H AL D+H    V  
Sbjct: 120 IPFDKPLLYYDVQKLYSLLQGDGKQKQSLDITVEELGIR-EDRPFHRALDDAHYTGRVMA 178

Query: 173 KM 174
            M
Sbjct: 179 AM 180


>gi|322492440|emb|CBZ27714.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 508

 Score = 75.6 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 80/223 (35%), Gaps = 33/223 (14%)

Query: 6   KMRKIVFDIETTG-----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEA 59
             R   FD+E TG      D   + I E+G    L     + TF   + P  GRK +   
Sbjct: 87  PFRVFTFDMEFTGPPVFTADGPTEDITELGLYSPL----LDETFSCLVQPVCGRKQAQGV 142

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKF-DVGFIN 107
            +L  ITD  L K+   F   +  F  F           +E+    ++H  K  DV  I 
Sbjct: 143 EELTHITDMMLEKEGIPFVEAWQRFLQFVQTPQPDEIAGSEERILLLSHGGKLADVSLIK 202

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPS---------SRNDLNSLCKRYGITISHRSKH 158
             L++ + +        DT+ + R  H               L  L +   IT +    H
Sbjct: 203 WTLEKFHMELPPSFVFGDTIHVIRDAHRRRPVTIDKHPPSWKLVDLVQWLHITPTL-PAH 261

Query: 159 GALLDSHLLSD-VYIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A  D+ +  D +Y  ++  G       +    RFF  E K +
Sbjct: 262 RAGNDARMTWDALYHTLLRYGDDEMTPREQLVPRFFDAEAKQL 304


>gi|163816457|ref|ZP_02207821.1| hypothetical protein COPEUT_02646 [Coprococcus eutactus ATCC 27759]
 gi|158448157|gb|EDP25152.1| hypothetical protein COPEUT_02646 [Coprococcus eutactus ATCC 27759]
          Length = 232

 Score = 75.6 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 84/220 (38%), Gaps = 31/220 (14%)

Query: 1   MIRKNK---MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLC 49
           MIR  K   M  IV D+E   LD K         + +IEIGAV + +  +    F++++ 
Sbjct: 1   MIRCRKGAKMVHIVVDLEMNWLDFKYENERKISTNEVIEIGAVTMNEKFEEIGAFKMYVK 60

Query: 50  PN-GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFIN 107
           P    K   +  KL GIT + L+D P F+  F  F  +      E + +     D   + 
Sbjct: 61  PQFNEKVVKKVEKLTGITMDKLQDSPVFADAFDAFIKWCISFGEEVVMYGWSDSDELQLR 120

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSR-----------NDLNSLCKRYGITISHRS 156
            E++  N    +     D   + R+ H   +             L+      GI  +   
Sbjct: 121 REMKLKNIPWKE-----DVDKVFRQWHDFQKEFSDLVGIGRIITLSQAVDYAGIDFAG-Q 174

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEE 196
           KH A  D+   + + + +     +     K+  + F  EE
Sbjct: 175 KHDACCDARNTAYL-LALTKDEKRFAKTMKSVLEAFNHEE 213


>gi|307128611|ref|YP_003880641.1| DNA polymerase III subunit alpha [Candidatus Sulcia muelleri CARI]
 gi|306483073|gb|ADM89943.1| DNA polymerase III, alpha subunit [Candidatus Sulcia muelleri CARI]
          Length = 1379

 Score = 75.3 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 18/187 (9%)

Query: 9   KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            I+FD ETTGL    +          R+++I      +  K        + P   +    
Sbjct: 2   YIIFDTETTGLPKDYNAPINNIINWPRLVKISWGLYDEKFKLIELKDYIIKPECYEIPFL 61

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKD 116
           + K+HGI+ ++  +K    + +  +F    N+ N  +I HN  FD+  I AE  R   K 
Sbjct: 62  STKIHGISTKYAIEKGYKINYVLKKFNKIINKYN-FFIGHNVFFDIKIICAEFFRIKKKI 120

Query: 117 PLDPSRIIDTLSIA--RRKHPSSRNDLN--SLCKRY-GITISHRSKHGALLDSHLLSDVY 171
            L   +IIDT   +         ++ L   +L + Y  +       H +  D    S  +
Sbjct: 121 FLYKKKIIDTKEKSINYCAIKIGKDKLKWPTLTELYKKLFNDTFIAHDSKSDVLATSKCF 180

Query: 172 IKMMVGG 178
            +++  G
Sbjct: 181 FELLRIG 187


>gi|161501966|ref|YP_261869.2| exonuclease I [Pseudomonas fluorescens Pf-5]
          Length = 475

 Score = 75.3 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 58/177 (32%), Gaps = 24/177 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ + DR +++  +   L  ++ +    ++  P+      P A  + GIT   L
Sbjct: 8   DYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITGITPGRL 67

Query: 71  KDKPS-FSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++    +   +   +         + +N  +FD       L R   DP           
Sbjct: 68  AEQGLGEADFMTRVHEQLARPGTCGVGYNTLRFDDEMTRYSLYRNFFDPYAREWQGGNSR 127

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              ID +  A    P               L  L    GI   H   H AL D    
Sbjct: 128 WDLIDVVRTAYALRPQGIVWPEEQGQVSLKLERLTAANGID--HGQAHDALSDVRAT 182


>gi|326802467|ref|YP_004320286.1| exonuclease RNase T and DNA polymerase III [Sphingobacterium sp.
           21]
 gi|326553231|gb|ADZ81616.1| Exonuclease RNase T and DNA polymerase III [Sphingobacterium sp.
           21]
          Length = 238

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 65/181 (35%), Gaps = 16/181 (8%)

Query: 10  IVFDIETTGLDSK-------NDR---IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           +  D ETTGL  K        D     +++  +      +  +    ++  +    S +A
Sbjct: 6   LFIDTETTGLPKKWTVGYSTKDNWPSAVQVAWIVFTKDGREIKRENFYVNEDDVVVSRQA 65

Query: 60  LKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-P 117
             +H I D +L+       ++  +      +     + H    D   + A+  R   + P
Sbjct: 66  QLVHRIKDSYLRTFGVPRCAVMEKLSSDLRQFKPLVVGHFVALDFHVLGADFYRCAMENP 125

Query: 118 LDPSRIIDTLSIA--RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L   R+  T+  +    K P  +   LN L +           H ALLD+   +  Y ++
Sbjct: 126 LGDLRLFCTMLASSGYVKKPWIKYLRLNELYQEL-FEKELEKAHNALLDADATAKSYFEL 184

Query: 175 M 175
           +
Sbjct: 185 V 185


>gi|322412690|gb|EFY03598.1| DNA polymerase III subunit epsilon [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 195

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 70/182 (38%), Gaps = 23/182 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K+    I FD+E    ++ N+   +I++ AV+  ++ + + +F  ++            
Sbjct: 1   MKHLDTYIAFDLE---FNTVNEISHLIQLSAVKYDNHKEVD-SFDTYVY-TDVPLQSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT + +   P    + + F DF  E     I +NA+  D+  +       N   L 
Sbjct: 56  GLTGITSDKIAAAPKVEEVITAFKDFVGE--LPLIGYNAQKSDLPILAE-----NGLDLR 108

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               ID    A  +  +  N      L ++    GI       H +L D+ + + +Y   
Sbjct: 109 DQYQIDLFDEAYDRRSADLNGIANLRLQTVATFLGIK---GRGHNSLEDARMTAGIYESF 165

Query: 175 MV 176
           + 
Sbjct: 166 LE 167


>gi|313497913|gb|ADR59279.1| Exonuclease [Pseudomonas putida BIRD-1]
          Length = 183

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 12/173 (6%)

Query: 9   KIVFDIETT---GLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E T   G     +  +IEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLVIDLEATTDDGGWPVTEMEVIEIGASLVTREGREVDHFQRFVKPRRRPQLTPFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            I+   +     F  +++ F  +      Q   W++    +D   ++ E Q+ + D L  
Sbjct: 64  HISQADVDSAAPFREVWASFERWLGHHRGQLQAWVSW-GDYDRQQLHQEWQQHSLDSLLR 122

Query: 121 SRIIDTL--SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +     L    A+ +H      LN   +  G+    +  H AL D+   + + 
Sbjct: 123 TLPHINLKQRFAKARHLQRPTGLNGALQLAGMHFCGQQ-HRALEDARNTARLL 174


>gi|218192641|gb|EEC75068.1| hypothetical protein OsI_11194 [Oryza sativa Indica Group]
          Length = 146

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 15/142 (10%)

Query: 72  DKPSFSSIFSEFWDFF-----NEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIID 125
           D P F         +       ++   W+AHN + FDV F+  E QR   +       +D
Sbjct: 6   DIPRFREFIPILLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGDWLFVD 65

Query: 126 TLSIARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           TL IAR+   S         L++L + Y I ++  S H A+ D   L  V  K+     +
Sbjct: 66  TLPIARQLIDSDGEKLKSVSLDNLREHYKIPLAG-SAHRAMQDVITLCYVLQKLTF---E 121

Query: 181 INFGFKTNEDRFFKEEKKTVPN 202
           +        +R F+    + P 
Sbjct: 122 LKLTVPQLLERSFRVSDLSTPR 143


>gi|228947153|ref|ZP_04109447.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228812400|gb|EEM58727.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 273

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++     K    F   + P G + +    KL GIT + L     F  I  +F
Sbjct: 18  EIVDIGAVKIEASTMKVIGEFSELVKP-GARLTRHTTKLTGITKKDLIGVEKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRIIDT---LSIARRKHPSSR 138
             F   +++ ++    + D  F++ +    + +       R ID    +  A  +     
Sbjct: 77  IRFIG-EDSIFVTWGKE-DYRFLSHDCTLHSVECPCMEKERRIDLQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L S  ++ G+    +  HGAL D+   +++ +K
Sbjct: 135 PSLQSAVEQLGLIWEGKQ-HGALADAENTANILLK 168


>gi|296137636|ref|YP_003644877.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia
           K12]
 gi|295797758|gb|ADG32547.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia
           K12]
          Length = 179

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 14/173 (8%)

Query: 10  IVFDIETT-----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
           +V D+E T     GL + +  IIEIGAV          TFQ  + P  R   +P   +L 
Sbjct: 6   LVIDLEATCDDADGLPASDMEIIEIGAVWATVEGSVLDTFQALVRPVVRPQLTPFCRQLT 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPS 121
            I    +     F ++ +    F     A         +FD   +  + +R   +   P 
Sbjct: 66  NIQQADVDGAELFPAVAARLASFAQRHQAPGATWGSWGQFDAKQLARDCERHGIE--SPL 123

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVY 171
              + +++ RR     +     + +     G+ +   S H  L D+  ++ + 
Sbjct: 124 AAFEHVNLKRRFAKGRKIKEVGMARALQMVGLPLDG-SHHRGLDDARNIAKLL 175


>gi|229821534|ref|YP_002883060.1| Exonuclease RNase T and DNA polymerase III [Beutenbergia cavernae
           DSM 12333]
 gi|229567447|gb|ACQ81298.1| Exonuclease RNase T and DNA polymerase III [Beutenbergia cavernae
           DSM 12333]
          Length = 283

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 72/193 (37%), Gaps = 15/193 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R      + FD ETTG+D  +DRI+    V         +  + ++   G +    A  
Sbjct: 5   MRWTDGPLVGFDTETTGVDVAHDRIVTAALVVRHGLQGLPQE-RTWIIDPGVEIPEAASA 63

Query: 62  LHGITDEFLK--DKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +HG+T E  +   +P        +          A  +A NA +D+  +  EL R +   
Sbjct: 64  IHGVTTEHARRLGRPPAEALEEIAAALAAAIADGAAVVAFNASYDLTILEHELVRHHLPT 123

Query: 118 LD------PSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           L       P  ++D   L  A  +    +  L  L   YG+  S    H A +D     D
Sbjct: 124 LHERLGRRPDAVLDPLVLDRALDRFRPGKRKLVDLAALYGV--STGELHAADVDVTATLD 181

Query: 170 VYIKMMVGGSQIN 182
           V   ++    ++ 
Sbjct: 182 VLRALVGRFPELA 194


>gi|225420339|ref|ZP_03762642.1| hypothetical protein CLOSTASPAR_06683 [Clostridium asparagiforme
           DSM 15981]
 gi|225041025|gb|EEG51271.1| hypothetical protein CLOSTASPAR_06683 [Clostridium asparagiforme
           DSM 15981]
          Length = 323

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 64/182 (35%), Gaps = 17/182 (9%)

Query: 7   MRKIVFDIETT-GLDSKND-------RIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSP 57
           M  IV D+E     + K D        IIEIGAV+L +  +    F   + P   R+   
Sbjct: 1   MDYIVLDLEWNQSPNGKEDSVEHLPFEIIEIGAVKLDEGFRQKGEFHRLIRPQVYRQLHF 60

Query: 58  EALKLHGITDEFLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           +  ++  +    LK +   F  +  EF D+   +   +       D+  +   +      
Sbjct: 61  KISEVTHMDMGELKHRGKNFKQVMREFLDWCGTEYC-FCTW-GSMDLTELQRNMDYFKVP 118

Query: 117 PLDPSR--IIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              P      D   +   ++   +N   L+   +  GI    R  H AL D+     V  
Sbjct: 119 NPFPRPLLYYDVQKLYCMEYGDGKNKPSLDQAVQERGIR-QERPFHRALSDAFYTGRVLA 177

Query: 173 KM 174
            M
Sbjct: 178 VM 179


>gi|149185171|ref|ZP_01863488.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21]
 gi|148831282|gb|EDL49716.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21]
          Length = 260

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 79/234 (33%), Gaps = 39/234 (16%)

Query: 12  FDIETTGLDSKNDRIIEI-GAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHGI 65
            D+ET G D++   I+E  GA+  +D     R   V          GR    +  +L GI
Sbjct: 2   IDLETEGFDAQYHHILEFAGAMIEVDRQ--GRILSVEGPKGGFNDPGRPIERKIAELTGI 59

Query: 66  TDEFLKD---KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           TDE +      P       +  D+  + +A   + NA FD   +   +  + K       
Sbjct: 60  TDEMVAGVRLSP------RKLADWIGQADACL-SFNAAFDRVHLEELVPEVGK-----MA 107

Query: 123 IIDTLS--IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL-----------SD 169
            I  ++    RR     R     L  + G+   +   H A  D   L             
Sbjct: 108 WICAMADVNWRRLGFDGRAQ-AYLAMQAGLFNDN--AHRATDDVETLVSLLSHSLDDGWT 164

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           V    M G     + F+  +  +  ++            +K   T + ++E DE
Sbjct: 165 VLSHAMEGARTKTWRFEATQLPYRFKDDVKRRGYRFSGLNKVWHTLVREDEFDE 218


>gi|166711560|ref|ZP_02242767.1| exonuclease I [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 481

 Score = 75.3 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 63/182 (34%), Gaps = 25/182 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV               F+ P +    SP A  + GIT
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 67  DEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI- 123
            +  L++  + +  F+   +  +      + +N+ +FD  F+   L R   DP +     
Sbjct: 65  PQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREWRG 124

Query: 124 -------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                  +D L +     P                L  L    G+       H AL D +
Sbjct: 125 GNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANGVR--EGDAHEALSDVY 182

Query: 166 LL 167
             
Sbjct: 183 AT 184


>gi|332845432|ref|XP_003315044.1| PREDICTED: ERI1 exoribonuclease 2 isoform 2 [Pan troglodytes]
          Length = 279

 Score = 75.3 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 84/243 (34%), Gaps = 32/243 (13%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE    +      + +  FQ ++ P      S   ++L 
Sbjct: 38  IVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFD 102
           GI    + +        S+F  + ++                     +   ++  +    
Sbjct: 98  GIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSASEVKLCAFVTWSDWDL 157

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +  E +R     P+  +  ID  +  +  +      L+   +  GI  S R  H  L
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGRE-HSGL 216

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP-LFTRITKEE 220
            DS   + +  KM+  G  +      + ++   +    VP +S  +++ P LF + +   
Sbjct: 217 DDSRNTALLAWKMIRDGCVMK--ITRSLNKVVPKGIHAVPKLSHQQKNNPSLFMKKSLHH 274

Query: 221 LDE 223
           L  
Sbjct: 275 LIA 277


>gi|34534279|dbj|BAC86956.1| unnamed protein product [Homo sapiens]
          Length = 279

 Score = 75.3 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 84/243 (34%), Gaps = 32/243 (13%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE    +      + +  FQ ++ P      S   ++L 
Sbjct: 38  IVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFD 102
           GI    + +        S+F  + ++                     +   ++  +    
Sbjct: 98  GIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDL 157

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +  E +R     P+  +  ID  +  +  +      L+   +  GI  S R  H  L
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGRE-HSGL 216

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP-LFTRITKEE 220
            DS   + +  KM+  G  +      + ++   +    VP +S  +++ P LF + +   
Sbjct: 217 DDSRNTALLAWKMIRDGCVMK--ITRSLNKVVPKGIHAVPKLSHQQKNNPSLFMKKSLHH 274

Query: 221 LDE 223
           L  
Sbjct: 275 LIA 277


>gi|21242349|ref|NP_641931.1| exonuclease I [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107784|gb|AAM36467.1| exodeoxyribonuclease I [Xanthomonas axonopodis pv. citri str. 306]
          Length = 481

 Score = 75.3 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 25/182 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV               F+ P +    SP A  + GIT
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 67  DEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI- 123
            +  L++  + +  F+   +         + +N+ +FD  FI   L R   DP +     
Sbjct: 65  PQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYEREWRG 124

Query: 124 -------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                  +D L +     P                L  L       +     H AL D +
Sbjct: 125 GNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADA--NDVREGDAHEALSDVY 182

Query: 166 LL 167
             
Sbjct: 183 AT 184


>gi|78047196|ref|YP_363371.1| exonuclease I [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78035626|emb|CAJ23314.1| exodeoxyribonuclease I [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 481

 Score = 75.3 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 25/182 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV               F+ P +    SP A  + GIT
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 67  DEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI- 123
            +  L++  + +  F+   +         + +N+ +FD  FI   L R   DP +     
Sbjct: 65  PQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYEREWRG 124

Query: 124 -------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                  +D L +     P                L  L       +     H AL D +
Sbjct: 125 GNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADA--NDVREGDAHEALSDVY 182

Query: 166 LL 167
             
Sbjct: 183 AT 184


>gi|291547443|emb|CBL20551.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Ruminococcus sp. SR1/5]
          Length = 318

 Score = 75.3 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 18/182 (9%)

Query: 7   MRKIVFDIETTGLDSKNDR---------IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           M  IVFD+E    +    R         IIEIGAV+L +  +   TFQ  + P       
Sbjct: 1   MNYIVFDLEWN-QNPDGRRHPDSRLPFEIIEIGAVKLNEKREIVDTFQCLIKPKVYHWIH 59

Query: 58  EAL-KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           +++ ++  +    L+    F      F ++  E+   +       DV  +   ++  N  
Sbjct: 60  DSIHEVIHVDYHELEKGIPFPRAIRRFLEWCGEEYRFFTW--GDQDVMELQRNMKYYNLL 117

Query: 117 PLDPSR--IIDTLSIARRKHPSS--RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            L P      D   +   K      R  L        +   +R  H AL D+   + + +
Sbjct: 118 KLMPGPVHYYDVQKLFSIKFEDGISRRSLEYATDYLQLP-KNRDFHRALADASYTARILL 176

Query: 173 KM 174
           ++
Sbjct: 177 EI 178


>gi|325928185|ref|ZP_08189394.1| Exodeoxyribonuclease I subunit C [Xanthomonas perforans 91-118]
 gi|325541481|gb|EGD13014.1| Exodeoxyribonuclease I subunit C [Xanthomonas perforans 91-118]
          Length = 481

 Score = 74.9 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 25/182 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV               F+ P +    SP A  + GIT
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 67  DEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI- 123
            +  L++  + +  F+   +         + +N+ +FD  FI   L R   DP +     
Sbjct: 65  PQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYEREWRG 124

Query: 124 -------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                  +D L +     P                L  L       +     H AL D +
Sbjct: 125 GNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADA--NDVREGDAHEALSDVY 182

Query: 166 LL 167
             
Sbjct: 183 AT 184


>gi|270004806|gb|EFA01254.1| three prime repair exonuclease [Tribolium castaneum]
          Length = 232

 Score = 74.9 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 43/198 (21%)

Query: 9   KIVFDIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQ-----------VFLCPNGRK 54
            + FD+ETTGL    +   RI E  AV +       +T Q                  R 
Sbjct: 7   FVFFDLETTGLPKFEENRTRITEFCAVAVRADHIGLQTAQKCKLPRVQSKLSLCFNPARA 66

Query: 55  NSPEALKLHGITDEFLKDKPSFSS----IFSEFWDFFNEQNAEWIAHN-AKFDVGFINAE 109
             P+A KL G+++E L+ +  FSS    +   + D  NE+    +AHN  +FD   + AE
Sbjct: 67  ICPQATKLTGLSNELLEHQAHFSSQTLNVIKNWLD-VNEKPICLVAHNGNEFDFPILRAE 125

Query: 110 LQRIN---------KDPLDPSRIIDTLSIA---------RRKHPSSRNDLNSLCKRYGIT 151
           ++             D +   + IDTL            + +   +  +L  + KR    
Sbjct: 126 IENTGENLPEDILCLDSIIAFKEIDTLEGGAVINQPNEIKIRKIDTSYNLGHVFKR---R 182

Query: 152 ISHR--SKHGALLDSHLL 167
           +S R  + HGA  D ++L
Sbjct: 183 LSKRPLNAHGAEGDVNML 200


>gi|121604837|ref|YP_982166.1| exonuclease I [Polaromonas naphthalenivorans CJ2]
 gi|120593806|gb|ABM37245.1| Exodeoxyribonuclease I subunit C [Polaromonas naphthalenivorans
           CJ2]
          Length = 482

 Score = 74.9 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 72/221 (32%), Gaps = 27/221 (12%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET GL+++ DR  +   +    + ++      ++  P N     PE+  L GIT +  
Sbjct: 10  DYETFGLNTRRDRPAQFAGIRTDAELNEIGEPLMIYCQPANDYLPDPESCVLTGITPQHC 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           L+      +  +       +     + +N  +FD       F    +    ++  +    
Sbjct: 70  LQHGVPEHAFAARIEQVLAQPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYGREWQNECGR 129

Query: 124 IDTL---SIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            D L    +A    P                L  L +  G+   H + H AL D      
Sbjct: 130 WDLLDVVRMAYALRPDGIVWPLKEDGKPSFKLEDLARANGLL--HETAHDALSDVRAT-I 186

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKK-TVPNISLLKRD 209
              +++       F F     +  +   +  +P  + + R 
Sbjct: 187 ALARLVRTAQPRLFDFCLGLHKKARVSAELGLPATARMARP 227


>gi|253688149|ref|YP_003017339.1| Exodeoxyribonuclease I [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251754727|gb|ACT12803.1| Exodeoxyribonuclease I [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 475

 Score = 74.9 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 65/197 (32%), Gaps = 28/197 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M  K +    + D ET G     DR  +   V   +D++       ++  P+      PE
Sbjct: 1   MAEKIQPTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPSDDYLPEPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A+ + GIT +  L    + +    +  D F+      + +N  +FD         R   D
Sbjct: 61  AVMITGITPQVALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L K  GI  SH   
Sbjct: 121 PYAYSWQNGNSRWDLLDALRACYALRPEGIIWPENNDGLPSFRLEHLTKANGI--SHEQA 178

Query: 158 HGALLDSHLL---SDVY 171
           H A+ D +     + ++
Sbjct: 179 HDAMSDVYATIAMAKLF 195


>gi|238569519|ref|XP_002386676.1| hypothetical protein MPER_14994 [Moniliophthora perniciosa FA553]
 gi|215439222|gb|EEB87606.1| hypothetical protein MPER_14994 [Moniliophthora perniciosa FA553]
          Length = 172

 Score = 74.9 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 11/140 (7%)

Query: 45  QVFLCPNGRKNSPEALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFD 102
            ++L P G  + P AL+LHGI D E +   P+FS+   +   F     +    +N  KFD
Sbjct: 10  SIYLNPEGIPSHPMALQLHGIQDAELVAPLPTFSAHAEQLRSFLA--GSIMTGYNITKFD 67

Query: 103 VGFINAELQRINKDPLDPSR---IIDTLSIARRKHPSSRN---DLNSLCKRYGITISHRS 156
           + F+ AE  R              IDTL++ RR  P        L S    + +      
Sbjct: 68  LAFLTAEFHRCGITWSPAGEGIGTIDTLALYRRFRPQEYKRGGKLFSAYLHF-VGGWQTQ 126

Query: 157 KHGALLDSHLLSDVYIKMMV 176
            H A  D+     +   M+ 
Sbjct: 127 AHNAEADAFTALRLLYAMVE 146


>gi|312884477|ref|ZP_07744181.1| exonuclease I [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367789|gb|EFP95337.1| exonuclease I [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 474

 Score = 74.9 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 65/204 (31%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M +  +     FD ET G +   DR  +   V    D++       ++  P       PE
Sbjct: 1   MHQDTQPTFFFFDYETWGTNPATDRPCQFAGVRTDRDFNIIGEPVVLYCQPPNDYLPSPE 60

Query: 59  ALKLHGITDEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +  + +        ++  +     N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKAQAEGLIEPEFIAKIHEQLATPNTISLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQNGNSRWDLLDVMRACHALRPEGINWPQNDEGFPSFKLEHLSVANGIE--HENA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+ V   ++
Sbjct: 179 HDAMADVIATIEMAKKISVAQPKL 202


>gi|66472518|ref|NP_001018450.1| 3'-5' exoribonuclease 1 [Danio rerio]
 gi|63100708|gb|AAH95343.1| Exoribonuclease 1 [Danio rerio]
 gi|182888732|gb|AAI64140.1| Eri1 protein [Danio rerio]
          Length = 337

 Score = 74.9 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 77/227 (33%), Gaps = 30/227 (13%)

Query: 9   KIVFDIETTG--LDSKN--DRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKL 62
             V D E T    +  +    IIE   V +  +  +   +FQ ++ P      S   +KL
Sbjct: 118 ICVVDFEATCEENNPPDYLHEIIEFPMVLIDTHTLEIVDSFQEYVKPVLHPQLSEFCVKL 177

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT E + +  +F  +      +  E+         K+   F+      + K      +
Sbjct: 178 TGITQEMVDEAKTFHQVLKRAISWLQEKELG-----TKYKYMFLTDGSWDMGKFLHTQCK 232

Query: 123 --IIDTLSIARRKH------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
              I     AR+              P ++  L  + +  G+    R  H  L DS  ++
Sbjct: 233 LSRIRYPQFARKWINIRKSYGNFYKVPRTQTKLICMLENLGMEYDGR-PHCGLDDSRNIA 291

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            + I M+  G Q+    + NE     E +    +  +     P   +
Sbjct: 292 RIAIHMLKDGCQL----RVNECLHSGEPRSVPISAPIEGAPAPQPPK 334


>gi|50121489|ref|YP_050656.1| exonuclease I [Pectobacterium atrosepticum SCRI1043]
 gi|49612015|emb|CAG75464.1| exodeoxyribonuclease I [Pectobacterium atrosepticum SCRI1043]
          Length = 475

 Score = 74.9 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 64/197 (32%), Gaps = 28/197 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M  K +    + D ET G     DR  +   V   +D++       ++  P       PE
Sbjct: 1   MADKTQPTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPTDDYLPEPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A+ + GIT +  L    + +    +  D F+      + +N  +FD         R   D
Sbjct: 61  AVMITGITPQIALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L K  GI  +H   
Sbjct: 121 PYAYSWQNSNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGI--AHEQA 178

Query: 158 HGALLDSHLL---SDVY 171
           H A+ D +     + ++
Sbjct: 179 HDAMSDVYATIAMAKLF 195


>gi|297242761|ref|ZP_06926699.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis AMD]
 gi|296888972|gb|EFH27706.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis AMD]
          Length = 261

 Score = 74.9 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 26/185 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           FD ETTG +   D I+    V    EL        T+   + P+ +  +P+A +++G TD
Sbjct: 34  FDTETTGANIGKDAIVSATLVLRNPELAHAGDVVSTW--LINPH-QPMNPKASEVNGFTD 90

Query: 68  EFLKD---KPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           E+L++   +P       +        +N   +A+NA FD+  +  +L+R +   L+    
Sbjct: 91  EYLQEHGGEPEEELEFLARAVSIAQAKNIPLLAYNAPFDIAMLRHDLKRWHLTALEERAT 150

Query: 124 I-------------DTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                         D L I R     S +  L    + YG+       H A  D+    D
Sbjct: 151 CSIHALNANDILTVDPLVIDRAVSRRSGKRTLTITSQFYGVE-PIGDFHDATADTVAALD 209

Query: 170 VYIKM 174
           +   M
Sbjct: 210 LIAPM 214


>gi|268316050|ref|YP_003289769.1| Exonuclease RNase T and DNA polymerase III [Rhodothermus marinus
           DSM 4252]
 gi|262333584|gb|ACY47381.1| Exonuclease RNase T and DNA polymerase III [Rhodothermus marinus
           DSM 4252]
          Length = 167

 Score = 74.9 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 32/172 (18%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD+ET+GL   +   I+E+  +   +     +                     G + +
Sbjct: 9   LFFDVETSGLRPDRGAAIVELALLGAREPLLLWK---------------------GTSAQ 47

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+    F  +F+   +         + HN +FD  F+  E  R+    + P R IDTL 
Sbjct: 48  RLQRA-QFRELFAHVRE------GVIVGHNLRFDFWFVTYEAGRLGL-AVPPIRFIDTLG 99

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +ARR  P      L +L    GI    +  H A+ D+     ++ K++  G 
Sbjct: 100 LARRLLPEQADYRLVALLHALGIE-PDKPLHTAVADAQATRALFWKLVERGK 150


>gi|12855883|dbj|BAB30489.1| unnamed protein product [Mus musculus]
          Length = 274

 Score = 74.9 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 64/198 (32%), Gaps = 31/198 (15%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE    +      +    F  ++ P      S    +L 
Sbjct: 38  IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFD 102
           GI    + +        S+F  + ++                     +   ++   + +D
Sbjct: 98  GIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTW-SDWD 156

Query: 103 VGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
           +G       R      P+  +  ID  +  R  +      L+   +  GI  S R  H  
Sbjct: 157 LGVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQEVGIEFSGRE-HSG 215

Query: 161 LLDSHLLSDVYIKMMVGG 178
           L DS   + +  KM+  G
Sbjct: 216 LDDSRNTALLAWKMIRDG 233


>gi|74141341|dbj|BAE35962.1| unnamed protein product [Mus musculus]
          Length = 636

 Score = 74.9 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 64/198 (32%), Gaps = 31/198 (15%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE    +      +    F  ++ P      S    +L 
Sbjct: 38  IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFD 102
           GI    + +        S+F  + ++                     +   ++   + +D
Sbjct: 98  GIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTW-SDWD 156

Query: 103 VGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
           +G       R      P+  +  ID  +  R  +      L+   +  GI  S R  H  
Sbjct: 157 LGVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQEVGIEFSGRE-HSG 215

Query: 161 LLDSHLLSDVYIKMMVGG 178
           L DS   + +  KM+  G
Sbjct: 216 LDDSRNTALLAWKMIRDG 233


>gi|61098180|ref|NP_081974.3| ERI1 exoribonuclease 2 [Mus musculus]
 gi|81888440|sp|Q5BKS4|ERI2_MOUSE RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease
           domain-containing protein 1
 gi|60688299|gb|AAH90961.1| Exonuclease domain containing 1 [Mus musculus]
 gi|74138480|dbj|BAE38055.1| unnamed protein product [Mus musculus]
 gi|74189274|dbj|BAE22676.1| unnamed protein product [Mus musculus]
          Length = 688

 Score = 74.9 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 64/198 (32%), Gaps = 31/198 (15%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE    +      +    F  ++ P      S    +L 
Sbjct: 38  IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFD 102
           GI    + +        S+F  + ++                     +   ++   + +D
Sbjct: 98  GIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTW-SDWD 156

Query: 103 VGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
           +G       R      P+  +  ID  +  R  +      L+   +  GI  S R  H  
Sbjct: 157 LGVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQEVGIEFSGRE-HSG 215

Query: 161 LLDSHLLSDVYIKMMVGG 178
           L DS   + +  KM+  G
Sbjct: 216 LDDSRNTALLAWKMIRDG 233


>gi|255528639|ref|ZP_05395399.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|296185899|ref|ZP_06854305.1| exonuclease [Clostridium carboxidivorans P7]
 gi|255507668|gb|EET84148.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|296049567|gb|EFG88995.1| exonuclease [Clostridium carboxidivorans P7]
          Length = 196

 Score = 74.9 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 63/186 (33%), Gaps = 37/186 (19%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNR-----TFQVFLCPNGRKNSPEAL 60
           M+KI  D ETTGL+     II++   V  ++     +      F   +        P A 
Sbjct: 1   MKKIFLDTETTGLEPGQ--IIQLTYCVCDINSRGEEKVCFAKNFFFDVD----YVEPSAE 54

Query: 61  KLHGITDEFLKD---KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            +HG + E LK       F    SE     + +   +IAHN +FD  F+ AE  R+N   
Sbjct: 55  AVHGFSVERLKTLSMGQEFKDAASEVAA--DLEGGIFIAHNVRFDQKFVTAEFDRLNSIH 112

Query: 118 LDPSRIIDTLSIAR-------RKHPSSRNDLNSLCKRYGIT-------------ISHRSK 157
            +P++   T+   +       +        L        +                    
Sbjct: 113 WNPAKFFCTMQYFKSKVNAKTKTGRLKNPRLEETMDFLRVDQNKVLQGAKKLFNCDDVDF 172

Query: 158 HGALLD 163
           H A  D
Sbjct: 173 HDARYD 178


>gi|26325030|dbj|BAC26269.1| unnamed protein product [Mus musculus]
          Length = 688

 Score = 74.9 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 64/198 (32%), Gaps = 31/198 (15%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE    +      +    F  ++ P      S    +L 
Sbjct: 38  IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFD 102
           GI    + +        S+F  + ++                     +   ++   + +D
Sbjct: 98  GIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTW-SDWD 156

Query: 103 VGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
           +G       R      P+  +  ID  +  R  +      L+   +  GI  S R  H  
Sbjct: 157 LGVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQEVGIEFSGRE-HSG 215

Query: 161 LLDSHLLSDVYIKMMVGG 178
           L DS   + +  KM+  G
Sbjct: 216 LDDSRNTALLAWKMIRNG 233


>gi|300836940|ref|YP_003754017.1| putative exonuclease Ycg4D [Klebsiella pneumoniae]
 gi|242205350|gb|ACS75438.1| putative exonuclease Ycg4D [Klebsiella pneumoniae]
          Length = 233

 Score = 74.9 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 8/131 (6%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R   +  +V D ETTGL  + D++IE+   ++             L P   +  P+A+ +
Sbjct: 100 RWVALEPLVLDTETTGL-GERDQVIELAVTDIRGAVLLC----TRLRPT-VEIDPQAMGV 153

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGIT+  L ++P+++ +        + +    +  N+ FD   +                
Sbjct: 154 HGITETELSNEPTWTQVAPALARLLSGR--HLVIFNSSFDSRMLRQTASAFGDQLSWWQE 211

Query: 123 IIDTLSIARRK 133
                   R +
Sbjct: 212 QNCLWGNRRIR 222


>gi|332852707|ref|ZP_08434341.1| exonuclease [Acinetobacter baumannii 6013150]
 gi|332871089|ref|ZP_08439702.1| exonuclease [Acinetobacter baumannii 6013113]
 gi|332729060|gb|EGJ60408.1| exonuclease [Acinetobacter baumannii 6013150]
 gi|332731849|gb|EGJ63129.1| exonuclease [Acinetobacter baumannii 6013113]
          Length = 226

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 89/243 (36%), Gaps = 46/243 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT----NRTFQVFL-CPNGRKNSPEAL 60
           M+ I+ D ET   +  N   IEI       +  +     +  F  +  CP       EA+
Sbjct: 1   MKAIILDTET---NKLNGYPIEIAYTPFSFENGQIQIHKDYAFSRYFSCPE--PIDLEAM 55

Query: 61  KLHGITDEFLKDKPSFSSI-FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +H I +  ++ +PS  +    E  +F        + HN  +D+  +N         P  
Sbjct: 56  AVHNIIEADIEGQPSCEAFRLPEGVEFI-------VGHNIDYDIKALNKC------GPAI 102

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH------RSKHGALLDSHLLSDVYIK 173
            ++ I TL++AR   P   +   ++   + ++         R  H A  D +    + I 
Sbjct: 103 KAKTICTLALARDVWPDLPSHKLAVLYYFVMSNREEARKHLRHAHSARADVYFTGIILIA 162

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNI---------SLLKRDKPLFT-RITKEELDE 223
           ++        G K     F   E   +P I          L +  +P  +  + KE+LD 
Sbjct: 163 LIE-----RLGIKDLNSLFLMSEAVRLPKIMTWGKHKGTPLKELPRPYISWLLNKEDLDP 217

Query: 224 HDK 226
           H +
Sbjct: 218 HLR 220


>gi|323486817|ref|ZP_08092135.1| exonuclease [Clostridium symbiosum WAL-14163]
 gi|323694961|ref|ZP_08109111.1| hypothetical protein HMPREF9475_03975 [Clostridium symbiosum
           WAL-14673]
 gi|323399830|gb|EGA92210.1| exonuclease [Clostridium symbiosum WAL-14163]
 gi|323501051|gb|EGB16963.1| hypothetical protein HMPREF9475_03975 [Clostridium symbiosum
           WAL-14673]
          Length = 335

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 16/179 (8%)

Query: 9   KIVFDIETT----GLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEA 59
            IV D+E      G D   DR    IIEIGAV+L    +    F+  + P   R+   + 
Sbjct: 4   YIVLDLEWNQSPLGKDGSMDRLPFEIIEIGAVKLNASLQIISEFRRLIRPRVYRQMHFKI 63

Query: 60  LKLHGIT-DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-P 117
            ++  ++ DE   +   F     EF  +  + + ++       D+  +   +     D P
Sbjct: 64  SEVTHMSMDELNMEGEEFGKAMEEFLAWCGD-DYKFCTW-GSMDLTELQRNMVYHGLDIP 121

Query: 118 LDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                +   L            ++ L+++ +  GI    R  H AL D++    +  +M
Sbjct: 122 FRMPLLYYDLQKIYGLIRGDKQKDSLDTVVEELGIA-EDRPFHRALDDAYYTGRIMAEM 179


>gi|300855094|ref|YP_003780078.1| putative exonuclease [Clostridium ljungdahlii DSM 13528]
 gi|300435209|gb|ADK14976.1| predicted exonuclease [Clostridium ljungdahlii DSM 13528]
          Length = 202

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 69/187 (36%), Gaps = 28/187 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I FD ETTGL   N  I ++  + +   +K  +T    +        P A K+HG T
Sbjct: 1   MNMIFFDTETTGLRPGN--ICQLSYILVDTSAKPTKTIGKNIFFAVDYIEPSAEKVHGFT 58

Query: 67  DEF---LKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            E    L    +F     EF  DF N      I HN  FD+ F+++E +  N + L+   
Sbjct: 59  VETLYKLSSGMNFKDHLDEFLNDFQNAD--ILIGHNVNFDIKFLSSEFKNCN-EILNIKH 115

Query: 123 IIDTLSIAR-------RKHPSSRNDLNSLCKRYGITISH------------RSKHGALLD 163
              T++  +       R +      L  + +   I   +             + H A  D
Sbjct: 116 TFCTMNYYKNICNLKNRYNKCKAPRLEEVVRFLHIENPYINAVSKKYFNGTGNFHDARFD 175

Query: 164 SHLLSDV 170
           +     +
Sbjct: 176 TTATYLL 182


>gi|332845434|ref|XP_003315045.1| PREDICTED: ERI1 exoribonuclease 2 isoform 3 [Pan troglodytes]
          Length = 328

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 29/197 (14%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE    +      + +  FQ ++ P      S   ++L 
Sbjct: 38  IVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFD 102
           GI    + +        S+F  + ++                     +   ++  +    
Sbjct: 98  GIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSASEVKLCAFVTWSDWDL 157

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +  E +R     P+  +  ID  +  +  +      L+   +  GI  S R  H  L
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGRE-HSGL 216

Query: 162 LDSHLLSDVYIKMMVGG 178
            DS   + +  KM+  G
Sbjct: 217 DDSRNTALLAWKMIRDG 233


>gi|332845430|ref|XP_003315043.1| PREDICTED: ERI1 exoribonuclease 2 isoform 1 [Pan troglodytes]
          Length = 691

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 29/197 (14%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE    +      + +  FQ ++ P      S   ++L 
Sbjct: 38  IVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFD 102
           GI    + +        S+F  + ++                     +   ++  +    
Sbjct: 98  GIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSASEVKLCAFVTWSDWDL 157

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +  E +R     P+  +  ID  +  +  +      L+   +  GI  S R  H  L
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGRE-HSGL 216

Query: 162 LDSHLLSDVYIKMMVGG 178
            DS   + +  KM+  G
Sbjct: 217 DDSRNTALLAWKMIRDG 233


>gi|327279889|ref|XP_003224688.1| PREDICTED: 3'-5' exoribonuclease 1-like [Anolis carolinensis]
          Length = 343

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 80/219 (36%), Gaps = 22/219 (10%)

Query: 9   KIVFDIETT---GLDSK-NDRIIEIGAVELLDYS--KTNRTFQVFLCPNGRK-NSPEALK 61
             V D E T   G   +    IIE   V L++    +   TFQ ++ P      S   + 
Sbjct: 125 ICVIDFEATCEEGNQLEFTHEIIEFPIV-LINTRTLEIEDTFQQYVKPVINPQLSDFCIN 183

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGFINAELQRIN-- 114
           L GI+ E +     F  +     D+        + +  I  +  +D+        R+N  
Sbjct: 184 LTGISQERVDKADEFPKVLQSVIDWMKQKELGSRYSYAILTDGSWDMSKFLNIQCRVNRL 243

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + P    + I+        +   RN   L+++ ++ G+    R  H  L DS  ++ + I
Sbjct: 244 RYPAFAKKWINIRKSYGNFYKVPRNQTKLSTMLEKLGMDYDGR-PHSGLDDSRNIAQIAI 302

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
           +M+    Q     + NE  +  +      ++ +     P
Sbjct: 303 RML----QDGCELRVNETLYDGQLMTVPSSVPIGGAPVP 337


>gi|170722729|ref|YP_001750417.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           W619]
 gi|169760732|gb|ACA74048.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           W619]
          Length = 181

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 12/173 (6%)

Query: 9   KIVFDIETT---GLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E T   G     +  IIEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLVIDLEATTDDGGWPVTEMEIIEIGASLVTREGREVDHFQRFVRPRRRPQLTPFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            I+   +     F  +++ F  +      Q   W++    +D   +  E Q+   D L  
Sbjct: 64  HISQANVDSAAPFPEVWARFERWLGHHRGQLQAWVSW-GDYDRQQLLQEWQQHELDSLLR 122

Query: 121 SRIIDTL--SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +     L    A+ +H      LN   +  G+    +  H AL D+   + + 
Sbjct: 123 NLPHINLKQRFAKARHLQRPTGLNGALQLAGMHFCGQQ-HRALEDARNTARLL 174


>gi|218505680|ref|NP_001136197.1| ERI1 exoribonuclease 2 isoform 1 [Homo sapiens]
 gi|190359336|sp|A8K979|ERI2_HUMAN RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease
           domain-containing protein 1
 gi|119587241|gb|EAW66837.1| similar to RIKEN cDNA 4933424N09 gene, isoform CRA_b [Homo sapiens]
          Length = 691

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 29/197 (14%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE    +      + +  FQ ++ P      S   ++L 
Sbjct: 38  IVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFD 102
           GI    + +        S+F  + ++                     +   ++  +    
Sbjct: 98  GIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDL 157

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +  E +R     P+  +  ID  +  +  +      L+   +  GI  S R  H  L
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGRE-HSGL 216

Query: 162 LDSHLLSDVYIKMMVGG 178
            DS   + +  KM+  G
Sbjct: 217 DDSRNTALLAWKMIRDG 233


>gi|218505674|ref|NP_542394.2| ERI1 exoribonuclease 2 isoform 2 [Homo sapiens]
 gi|119587240|gb|EAW66836.1| similar to RIKEN cDNA 4933424N09 gene, isoform CRA_a [Homo sapiens]
          Length = 328

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 29/197 (14%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE    +      + +  FQ ++ P      S   ++L 
Sbjct: 38  IVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFD 102
           GI    + +        S+F  + ++                     +   ++  +    
Sbjct: 98  GIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDL 157

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +  E +R     P+  +  ID  +  +  +      L+   +  GI  S R  H  L
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGRE-HSGL 216

Query: 162 LDSHLLSDVYIKMMVGG 178
            DS   + +  KM+  G
Sbjct: 217 DDSRNTALLAWKMIRDG 233


>gi|14714721|gb|AAH10503.1| Exoribonuclease 2 [Homo sapiens]
 gi|123996651|gb|ABM85927.1| exonuclease domain containing 1 [synthetic construct]
 gi|123996653|gb|ABM85928.1| exonuclease domain containing 1 [synthetic construct]
 gi|307684634|dbj|BAJ20357.1| ERI1 exoribonuclease family member 2 [synthetic construct]
          Length = 328

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 29/197 (14%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE    +      + +  FQ ++ P      S   ++L 
Sbjct: 38  IVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFD 102
           GI    + +        S+F  + ++                     +   ++  +    
Sbjct: 98  GIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDL 157

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +  E +R     P+  +  ID  +  +  +      L+   +  GI  S R  H  L
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGRE-HSGL 216

Query: 162 LDSHLLSDVYIKMMVGG 178
            DS   + +  KM+  G
Sbjct: 217 DDSRNTALLAWKMIRDG 233


>gi|21911144|ref|NP_665412.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS315]
 gi|21905355|gb|AAM80215.1| putative DNA polymerase III epsilon subunit [Streptococcus pyogenes
           MGAS315]
          Length = 208

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 67/182 (36%), Gaps = 23/182 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K+    I FD+E    ++ ND   +I+  AV+  D+ K   +F  ++            
Sbjct: 14  MKHLDTYIAFDLE---FNTVNDVSHVIQGSAVKY-DHHKEVDSFDTYVY-TDVPLQSFIN 68

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT   +   P    + + F +F  E     I +NA+  D+  +       N   L 
Sbjct: 69  GLTGITSNKIAAAPKVEEVMAAFKNFVGE--LPLIGYNAQKSDLPILAE-----NGLDLR 121

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               ID    A  +  +  N      L ++    GI       H +L D+ + + +Y   
Sbjct: 122 DQYQIDLFDEAYDRRSADLNGIANLRLQTVATFLGIK---GRGHNSLEDARMTAAIYESF 178

Query: 175 MV 176
           + 
Sbjct: 179 LE 180


>gi|301787585|ref|XP_002929208.1| PREDICTED: 3'-5' exoribonuclease 1-like [Ailuropoda melanoleuca]
          Length = 349

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 16/201 (7%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 130 ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 189

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGF---INAELQRIN 114
            GIT + +    +F  +  +  D+        +    I  +  +D+     I   L R+ 
Sbjct: 190 TGITQDQVDRADTFPQVLKQVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCRLSRLK 249

Query: 115 KDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             P       I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++
Sbjct: 250 YPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR-PHSGLDDSKNIARIAVR 308

Query: 174 MMVGGSQINFGFKTNEDRFFK 194
           M+  G ++    K +  +   
Sbjct: 309 MLQDGCELRINEKMHAGQLMS 329


>gi|281345321|gb|EFB20905.1| hypothetical protein PANDA_019321 [Ailuropoda melanoleuca]
          Length = 311

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 16/201 (7%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 92  ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 151

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGF---INAELQRIN 114
            GIT + +    +F  +  +  D+        +    I  +  +D+     I   L R+ 
Sbjct: 152 TGITQDQVDRADTFPQVLKQVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCRLSRLK 211

Query: 115 KDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             P       I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++
Sbjct: 212 YPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR-PHSGLDDSKNIARIAVR 270

Query: 174 MMVGGSQINFGFKTNEDRFFK 194
           M+  G ++    K +  +   
Sbjct: 271 MLQDGCELRINEKMHAGQLMS 291


>gi|291409160|ref|XP_002720873.1| PREDICTED: histone mRNA 3 end-specific exonuclease-like
           [Oryctolagus cuniculus]
          Length = 344

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 16/199 (8%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPNG-RKNSPEALKL 62
             + D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 125 ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEANTQLSDFCINL 184

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGF---INAELQRIN 114
            GIT + +    +F  +  +  D+        +    I  +  +D+     I  +L R+ 
Sbjct: 185 TGITQDQVDKADTFPQVLRKVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCQLSRLK 244

Query: 115 KDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             P       I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++
Sbjct: 245 YPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR-PHSGLDDSKNIARIAVR 303

Query: 174 MMVGGSQINFGFKTNEDRF 192
           M+  G ++    K +  + 
Sbjct: 304 MLQDGCELRINEKMHAGQL 322


>gi|313889801|ref|ZP_07823443.1| DNA polymerase III, epsilon subunit [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313121846|gb|EFR44943.1| DNA polymerase III, epsilon subunit [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 195

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 72/182 (39%), Gaps = 24/182 (13%)

Query: 4   KNKMR-KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             K+R  I FD+E    ++ ND   +I++ AV++ ++ + +  F  F+            
Sbjct: 1   MEKLRNYIAFDLE---FNTVNDVSHLIQLSAVKMANHEEVDN-FDSFVY-TDVPLQSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
            L GIT + +   P  + +  +F  F  +     I +N++  D+  +       N   L 
Sbjct: 56  GLTGITADQIARAPKINQVLEDFKVFVGDH--ALIGYNSQKSDLPILAD-----NGLDLF 108

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +D    A  +  S  N      L ++ +  GI       H +L D+ + + +Y   
Sbjct: 109 GQYKVDLYDEAFERRSSDLNGITNLKLTTVARFLGIK---GKGHNSLEDARMTARIYETF 165

Query: 175 MV 176
           + 
Sbjct: 166 LE 167


>gi|229018743|ref|ZP_04175593.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH1273]
 gi|228742549|gb|EEL92699.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH1273]
          Length = 273

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++     K    F   + P+    +    KL GIT + L     F  I  +F
Sbjct: 18  EIVDIGAVKIDASTMKIIGEFSELVKPS-APLTRHTTKLTGITKKDLIGVEKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--IIDT---LSIARRKHPSSR 138
             F   ++  +I+   + D  F++ +      +     +    D    +  A  +     
Sbjct: 77  IKFIG-EDFIFISWGKE-DYRFLSHDCTLHGVECPCMEKESRFDVQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L    ++  +T   R  H A  D+   +++++K
Sbjct: 135 PSLQFAVEQLDLTWEGRQ-HRAFADAENTANIFLK 168


>gi|332224715|ref|XP_003261514.1| PREDICTED: ERI1 exoribonuclease 2 [Nomascus leucogenys]
          Length = 689

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 29/197 (14%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE    +      +    FQ ++ P      S   ++L 
Sbjct: 38  IVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIESEFQAYVQPQEHPILSEFCMELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFD 102
           GI    + +        S+F  + ++                     ++  ++  +    
Sbjct: 98  GIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSTSEVKSCAFVTWSDWDL 157

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +  E +R     P+  +  ID  +  +  +      L+   +  GI  S R  H  L
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGRE-HSGL 216

Query: 162 LDSHLLSDVYIKMMVGG 178
            DS   + +  KM+  G
Sbjct: 217 DDSRNTALLAWKMIRDG 233


>gi|15221225|ref|NP_177579.1| exonuclease family protein [Arabidopsis thaliana]
 gi|12324816|gb|AAG52378.1|AC011765_30 putative exonuclease; 20146-18080 [Arabidopsis thaliana]
 gi|20466502|gb|AAM20568.1| putative exonuclease [Arabidopsis thaliana]
 gi|23198160|gb|AAN15607.1| putative exonuclease [Arabidopsis thaliana]
 gi|332197464|gb|AEE35585.1| polynucleotidyl transferase, ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 506

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 20/173 (11%)

Query: 9   KIVFDIETTGLDSKNDR---IIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLH- 63
              FD+ET  + +K+     I+E GA+ +         ++   + P           L  
Sbjct: 13  IAFFDLETA-VPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSL---ISTLTK 68

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLD 119
              GIT + +    +FS I  + +D  + +   W  HN  +FD   I      I   P +
Sbjct: 69  RRSGITRDGVLSAHTFSEIADKVYDILHGR--IWAGHNIIRFDCVRIREAFAEIGLSPPE 126

Query: 120 PSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           P   ID+LS+  +K    +    + SL   +G+       H +L D  +  +V
Sbjct: 127 PKATIDSLSLLSQKFGKRAGDMKMASLATYFGL---GDQAHRSLDDVRMNLEV 176


>gi|47214707|emb|CAG01060.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 228

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 81/228 (35%), Gaps = 34/228 (14%)

Query: 3   RKNKMRK--IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             ++ R+  + FD+ETTGL S  D II++ AV          +  +++ P  R   P A 
Sbjct: 5   ETSQFRQALVFFDLETTGLGSTCD-IIQLAAVSG------GHSLNLYVVP-RRPLQPGAA 56

Query: 61  KLHGI--------TDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHN-AKFDVGFINAEL 110
           K+ G             L    S   +   F  F    +    + HN  +FD   +   L
Sbjct: 57  KVTGFRVRRRRLYLHRQLVPTNSLREVLVSFIAFLRMLHHPLIVGHNIRRFDGPLLGRVL 116

Query: 111 QRINKDPLDPSR---IIDTLSIARRKHPSSRNDLNS------LCKRYGITISHRSKHGAL 161
             ++      S     +DTLS+A+       ++L +      + +  G+       H AL
Sbjct: 117 DELDLRTQFESSVTGWVDTLSLAQELLRG--HNLQNFRQETLVRELLGLDY---RAHDAL 171

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
            D   L  ++  +    + ++    T             P +   +R 
Sbjct: 172 QDVRALQALFGALQPTAATLSRHRVTLGAMETAPPPPHRPPVDRQRRA 219


>gi|73979366|ref|XP_539997.2| PREDICTED: similar to histone mRNA 3 end-specific exonuclease
           [Canis familiaris]
          Length = 349

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 16/201 (7%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 130 ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPELNTQLSDFCINL 189

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGF---INAELQRIN 114
            GIT + +    +F  +  +  D+        +    I  +  +D+     I   L R+ 
Sbjct: 190 TGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCRLSRLK 249

Query: 115 KDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             P       I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++
Sbjct: 250 YPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR-PHSGLDDSKNIARIAVR 308

Query: 174 MMVGGSQINFGFKTNEDRFFK 194
           M+  G ++    K +  +   
Sbjct: 309 MLQDGCELRINEKMHAGQLMS 329


>gi|150390277|ref|YP_001320326.1| exonuclease, RNase T and DNA polymerase III [Alkaliphilus
           metalliredigens QYMF]
 gi|149950139|gb|ABR48667.1| Exonuclease, RNase T and DNA polymerase III [Alkaliphilus
           metalliredigens QYMF]
          Length = 192

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 66/190 (34%), Gaps = 26/190 (13%)

Query: 7   MRKIVFDIE------------------TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           M+ I+FD E                  T  L  +   IIEIGAV+  D  +   TFQ+F+
Sbjct: 1   MKYIIFDFEFNSAFRIDRKTKRLMKGNTNPLCPQ--EIIEIGAVKTNDEFEIEETFQMFV 58

Query: 49  CPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            P    K  P+  K   IT+E L    S +S  +    + NE      +     D+  + 
Sbjct: 59  RPVLYTKLHPKVKKKTQITNEDLLGGKSLNSSITALQHWINEDEFIMCSWGKD-DINELK 117

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDS 164
                         +  D   +        +     L    + + I I  R  H AL DS
Sbjct: 118 RNCSFFEIQTNWIDKYCDIQKMCMNYLDLPKGKQIGLKKAVETFNIEIDSR-FHKALNDS 176

Query: 165 HLLSDVYIKM 174
              + +  K+
Sbjct: 177 IYTAKILKKL 186


>gi|303229628|ref|ZP_07316416.1| exonuclease [Veillonella atypica ACS-134-V-Col7a]
 gi|302515753|gb|EFL57707.1| exonuclease [Veillonella atypica ACS-134-V-Col7a]
          Length = 327

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 74/192 (38%), Gaps = 17/192 (8%)

Query: 7   MRKIVFDIE-----TTGLD-------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M  I+FD+E     +  +             II+IGA++L +  +   +F +++ P    
Sbjct: 1   MDYIIFDLEWNQPYSNDISFMKRARMPLTGEIIQIGAIKLNENLEIVDSFTMYVKPKYLP 60

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
                   L GIT++ L     F + +S F  +   ++   ++     D+  +   L   
Sbjct: 61  HMHKHVKALTGITNQDLNRGVPFRAAYSHFQQWCG-KDYMLLSW-GADDILILRENLLLH 118

Query: 114 NKDPLDPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               +D     D   L   +R   + +  +    +   I+    S H AL D+   + + 
Sbjct: 119 KLKSIDYDSWADAQMLYSYQRYGTTQQYSVAHAMEDLHISSEELSAHNALHDAIFTAHIC 178

Query: 172 IKMMVGGSQINF 183
            K+ +  + +++
Sbjct: 179 QKLDLPTALLHY 190


>gi|154247607|ref|YP_001418565.1| exonuclease RNase T and DNA polymerase III [Xanthobacter
           autotrophicus Py2]
 gi|154161692|gb|ABS68908.1| Exonuclease RNase T and DNA polymerase III [Xanthobacter
           autotrophicus Py2]
          Length = 200

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 66/196 (33%), Gaps = 35/196 (17%)

Query: 9   KIVFDIETTGLDSKNDR----------IIEIGAVELLDYSKTNRTFQVFLCP---NGRKN 55
            + +D ETTG    +DR          I+++ A    D  +    F   + P   +G   
Sbjct: 2   ILFWDTETTGF--FDDRLPVDHKAQPYIVQLAAQLCEDDGRPIAGFSFIIDPGIGDGINI 59

Query: 56  SPEALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-I 113
              A  +HGIT+E  ++   S     S F   +   +    AHNAKFD G     + R  
Sbjct: 60  PERAAAVHGITNERAVQFGVSTEFALSAFTHLYQRADMV-CAHNAKFDKGVTETAISRHY 118

Query: 114 NKDPLDPSRIIDTLS--------------IARRKHPSSRNDLNSLCKR-YGITISHRSKH 158
            +       +  T+                A   +      L    +  +G  +     H
Sbjct: 119 GRVMPLRKPVFCTMESATPIINLPPTDRMRAAGFNKPKPPKLEECIRHFFGEDLDG--AH 176

Query: 159 GALLDSHLLSDVYIKM 174
            A++D      VY  +
Sbjct: 177 DAMVDVAACRRVYFHL 192


>gi|300782107|ref|YP_003762398.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
 gi|299791621|gb|ADJ41996.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
          Length = 461

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 8/168 (4%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +   V DI TTGL  ++ R++E+ AV +             + P        AL +HGIT
Sbjct: 18  LEFTVVDIRTTGL--RSGRVVELAAVRVSADGSFGGELTTLVDPGPGVPPGPAL-VHGIT 74

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L   PSF  +   F D      +  +AH+      F++ E+  +    +     + T
Sbjct: 75  RGELDGAPSFGEVLGPFLDLCA--GSVLVAHDLASAGAFLDREIGALGVR-MPVLPGVST 131

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            + AR           ++    G+         AL  +  ++ + + +
Sbjct: 132 QAAARSVVRLPNYRPATVAHALGVPTRPGQ--SALSGARTVAQLVVGL 177


>gi|162449255|ref|YP_001611622.1| exonuclease [Sorangium cellulosum 'So ce 56']
 gi|161159837|emb|CAN91142.1| predicted exonuclease [Sorangium cellulosum 'So ce 56']
          Length = 191

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 63/171 (36%), Gaps = 11/171 (6%)

Query: 9   KIVFDIETT----GLDSKN-DRIIEIGAVELLDY--SKTNRTFQVFLCPNGRK-NSPEAL 60
            +V D+E T    G   +    IIEIGAV L+D    +       F+ P  R   +    
Sbjct: 8   FLVIDLEATCDEEGRIPERIMEIIEIGAV-LVDGATLEPVSELATFVRPVIRPRLTEFCT 66

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           KL  IT   +   P+F    +    F  ++ A + +    +D      +  R        
Sbjct: 67  KLTTITQADVDAAPTFPEAIAALGRFVGQREALFCSW-GDYDRKQFEIDAARWGVPLPLQ 125

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +      +     + R  + S  +R G+ + H + H  + D+  ++ + 
Sbjct: 126 GHMNIKKRFSAALGVTQRYGMASALERLGLPL-HGTHHRGIDDARNIARIL 175


>gi|149921188|ref|ZP_01909645.1| DNA polymerase III, epsilon subunit [Plesiocystis pacifica SIR-1]
 gi|149817959|gb|EDM77419.1| DNA polymerase III, epsilon subunit [Plesiocystis pacifica SIR-1]
          Length = 389

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 10/167 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ET   ++    +  +G   + +    +   +  + P  R   P   +LHGI   
Sbjct: 207 FVTLDLETA--NADPASVCAMGLATVCEGRLVDAGGE-LVEPQSR-FDPVHTRLHGIDRR 262

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++    F+  +    +    +    +AHNA F    + A           P R++ TL 
Sbjct: 263 AVRGVGPFAEHWLPLAEELAGR--WVLAHNATFAARCLRALASTFGPGAPAPPRLLCTLR 320

Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +AR   P    + L  L + +G++      H     +   +++ + M
Sbjct: 321 LARAVWPREPGHALERLAEEFGLSAPRHDPH---AGARCCAELALLM 364


>gi|302844761|ref|XP_002953920.1| hypothetical protein VOLCADRAFT_44726 [Volvox carteri f.
           nagariensis]
 gi|300260732|gb|EFJ44949.1| hypothetical protein VOLCADRAFT_44726 [Volvox carteri f.
           nagariensis]
          Length = 201

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 62/182 (34%), Gaps = 13/182 (7%)

Query: 9   KIVFDIETTGLDSKN---DRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E T    ++     IIE+ A+ L  +S  T   FQ  + P       P  ++L 
Sbjct: 3   FLVLDLEATCTKCRSLYPIEIIEVSALLLDAHSLATLGEFQSHVRPTEHPLLDPFCVELT 62

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN------AKFDVGFINAELQRINKDP 117
           GI  E +   P    +   F  +     A   A +        +D+           + P
Sbjct: 63  GIEQEQVDTAPLLGDVLLRFQQWLEGLGAFGGAKSLLPVTWTDWDLKICLETECGWRQLP 122

Query: 118 LDPS-RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             P  R    L           + L    +  G+    R  H  L DS   + + ++M+ 
Sbjct: 123 RPPYLRRWCNLKRVYGARYRRASSLQKCVEALGLRWQGR-AHNGLDDSRNTAMLAVRMVR 181

Query: 177 GG 178
            G
Sbjct: 182 DG 183


>gi|229592327|ref|YP_002874446.1| exonuclease I [Pseudomonas fluorescens SBW25]
 gi|229364193|emb|CAY51862.1| exodeoxyribonuclease I [Pseudomonas fluorescens SBW25]
          Length = 475

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 59/177 (33%), Gaps = 24/177 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ ++DR +++  +   L+ ++      ++  P+      P A  + GIT   L
Sbjct: 8   DYETTGINPRSDRPLQVAGIRTDLELNEIGAPVNLYCQPSDDILPHPVACAITGITPAIL 67

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +K  + +   +               +N  +FD       L R   DP           
Sbjct: 68  AEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREWQGGNSR 127

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              ID +  A    P               L  L +  GI   H   H AL D    
Sbjct: 128 WDLIDVVRTAYALRPEGIEWPQQDGRVTLKLERLTEANGID--HGQAHDALSDVRAT 182


>gi|194226477|ref|XP_001915858.1| PREDICTED: similar to histone mRNA 3 end-specific exonuclease
           [Equus caballus]
          Length = 349

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 16/201 (7%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 130 ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 189

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGF---INAELQRIN 114
            GIT + +    +F  +  +  D+        +    I  +  +D+     I   L R+ 
Sbjct: 190 TGITQDLVDGADTFPQVLRKVVDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCRLSRLK 249

Query: 115 KDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             P       I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++
Sbjct: 250 YPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR-PHSGLDDSKNIARIAVR 308

Query: 174 MMVGGSQINFGFKTNEDRFFK 194
           M+  G ++    K +  +   
Sbjct: 309 MLQDGCELRINEKMHAGQLMS 329


>gi|15599512|ref|NP_253006.1| exonuclease I [Pseudomonas aeruginosa PAO1]
 gi|9950540|gb|AAG07704.1|AE004848_3 exodeoxyribonuclease I [Pseudomonas aeruginosa PAO1]
          Length = 480

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 26/193 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG+D + DR ++I  +   +  ++      ++  P+      P A  + GIT + L
Sbjct: 11  DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++  S +   +       +       +N+ +FD       L R   DP           
Sbjct: 71  AERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSR 130

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    G  + H   H AL D      +
Sbjct: 131 WDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANG--LEHGQAHDALSDVRAT--I 186

Query: 171 YIKMMVGGSQINF 183
            +  ++   Q   
Sbjct: 187 ALARLIRQRQPRL 199


>gi|116052350|ref|YP_792661.1| exonuclease I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587571|gb|ABJ13586.1| exodeoxyribonuclease I [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 480

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 26/193 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG+D + DR ++I  +   +  ++      ++  P+      P A  + GIT + L
Sbjct: 11  DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++  S +   +       +       +N+ +FD       L R   DP           
Sbjct: 71  AERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSR 130

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    G  + H   H AL D      +
Sbjct: 131 WDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANG--LEHGQAHDALSDVRAT--I 186

Query: 171 YIKMMVGGSQINF 183
            +  ++   Q   
Sbjct: 187 ALARLIRQRQPRL 199


>gi|294626343|ref|ZP_06704945.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294665158|ref|ZP_06730459.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292599344|gb|EFF43479.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292605071|gb|EFF48421.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 481

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 61/182 (33%), Gaps = 25/182 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV               F+ P +    SP A  + GIT
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRMIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 67  DEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI- 123
            +  L++  + +  FS   +         + +N+ +FD  FI   L R   DP +     
Sbjct: 65  PQHALREGVTEAEAFSRIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYEREWRG 124

Query: 124 -------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                  +D L +     P                L  L       +     H AL D +
Sbjct: 125 GNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADA--NDVREGDAHEALSDVY 182

Query: 166 LL 167
             
Sbjct: 183 AT 184


>gi|254244874|ref|ZP_04938196.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 2192]
 gi|126198252|gb|EAZ62315.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 2192]
          Length = 480

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 26/193 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG+D + DR ++I  +   +  ++      ++  P+      P A  + GIT + L
Sbjct: 11  DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++  S +   +       +       +N+ +FD       L R   DP           
Sbjct: 71  AERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSR 130

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    G  + H   H AL D      +
Sbjct: 131 WDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANG--LEHGQAHDALSDVRAT--I 186

Query: 171 YIKMMVGGSQINF 183
            +  ++   Q   
Sbjct: 187 ALARLIRQRQPRL 199


>gi|218893406|ref|YP_002442275.1| exonuclease I [Pseudomonas aeruginosa LESB58]
 gi|218773634|emb|CAW29448.1| exodeoxyribonuclease I [Pseudomonas aeruginosa LESB58]
          Length = 480

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 26/193 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG+D + DR ++I  +   +  ++      ++  P+      P A  + GIT + L
Sbjct: 11  DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++  S +   +       +       +N+ +FD       L R   DP           
Sbjct: 71  AERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSR 130

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    G  + H   H AL D      +
Sbjct: 131 WDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANG--LEHGQAHDALSDVRAT--I 186

Query: 171 YIKMMVGGSQINF 183
            +  ++   Q   
Sbjct: 187 ALARLIRQRQPRL 199


>gi|107100101|ref|ZP_01364019.1| hypothetical protein PaerPA_01001122 [Pseudomonas aeruginosa PACS2]
          Length = 480

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 26/193 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG+D + DR ++I  +   +  ++      ++  P+      P A  + GIT + L
Sbjct: 11  DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++  S +   +       +       +N+ +FD       L R   DP           
Sbjct: 71  AERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSR 130

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    G  + H   H AL D      +
Sbjct: 131 WDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANG--LEHGQAHDALSDVRAT--I 186

Query: 171 YIKMMVGGSQINF 183
            +  ++   Q   
Sbjct: 187 ALARLIRQRQPRL 199


>gi|254239017|ref|ZP_04932340.1| exodeoxyribonuclease I [Pseudomonas aeruginosa C3719]
 gi|126170948|gb|EAZ56459.1| exodeoxyribonuclease I [Pseudomonas aeruginosa C3719]
          Length = 480

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 26/193 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG+D + DR ++I  +   +  ++      ++  P+      P A  + GIT + L
Sbjct: 11  DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++  S +   +       +       +N+ +FD       L R   DP           
Sbjct: 71  AERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSR 130

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    G  + H   H AL D      +
Sbjct: 131 WDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANG--LEHGQAHDALSDVRAT--I 186

Query: 171 YIKMMVGGSQINF 183
            +  ++   Q   
Sbjct: 187 ALARLIRQRQPRL 199


>gi|296391019|ref|ZP_06880494.1| exonuclease I [Pseudomonas aeruginosa PAb1]
          Length = 480

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 26/193 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG+D + DR ++I  +   +  ++      ++  P+      P A  + GIT + L
Sbjct: 11  DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 70

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++  S +   +       +       +N+ +FD       L R   DP           
Sbjct: 71  AERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSR 130

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    G  + H   H AL D      +
Sbjct: 131 WDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANG--LEHGQAHDALSDVRAT--I 186

Query: 171 YIKMMVGGSQINF 183
            +  ++   Q   
Sbjct: 187 ALARLIRQRQPRL 199


>gi|26988099|ref|NP_743524.1| exonuclease I [Pseudomonas putida KT2440]
 gi|24982826|gb|AAN66988.1|AE016327_3 exodeoxyribonuclease I [Pseudomonas putida KT2440]
          Length = 477

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 72/226 (31%), Gaps = 26/226 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ + DR +++  +    D ++ +    ++  P+      P A  + GIT + L
Sbjct: 9   DYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILPHPAACLVTGITPQLL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++        +       +       +N  +FD       L R   DP           
Sbjct: 69  AEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L K  GI   H   H AL D      +
Sbjct: 129 WDLIDIVRTAYALRPEGIEWPQQDGRTSLRLELLSKANGID--HGHAHEALSDVRAT--I 184

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            +  ++   Q        + R   +  + +  +  L      F+  
Sbjct: 185 ALARLIRQKQPKLYDWLFQLRSKHKVMEQIRLLQPLVHISGRFSAA 230


>gi|229024985|ref|ZP_04181414.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH1272]
 gi|228736320|gb|EEL86886.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH1272]
          Length = 208

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            I++IGAV++     K    F   + P+    +    KL GIT + L     F  I  +F
Sbjct: 18  EIVDIGAVKIDASTMKIIGEFSELVKPS-APLTRHTTKLTGITKKDLIGVEKFPQIIEKF 76

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--IIDT---LSIARRKHPSSR 138
             F   ++  +I+   + D  F++ +      +     +    D    +  A  +     
Sbjct: 77  IKFIG-EDFIFISWGKE-DYRFLSHDCTLHGVECPCMEKESRFDVQKFVFQAYEELFEHT 134

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L    ++  +T   R  H A  D+   +++++K
Sbjct: 135 PSLQFAVEQLDLTWEGRQ-HRAFADAENTANIFLK 168


>gi|311695266|gb|ADP98139.1| exonuclease I [marine bacterium HP15]
          Length = 481

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 67/178 (37%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDE-F 69
           D ET G+D  +DR  +   V    D +       ++  P +    SPEA  + GIT +  
Sbjct: 9   DYETFGVDPVHDRPSQFAGVRTDADLNIIEDPLVIYCKPADDYLPSPEACLITGITPQKA 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------DP 120
           L+D    +   ++  + F++     + +N+ +FD       L R  +DP           
Sbjct: 69  LEDGFPEAEFIAQINEAFSQPGTCVVGYNSLRFDDEVTRHTLYRNLRDPYAREWQNGNSR 128

Query: 121 SRIIDTLS-----------IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             IID +              R++  S    L  L    GI  +H + H A+ D    
Sbjct: 129 WDIIDMVRLTYALRPEGINWPRKEDGSPSFKLEELTVANGI--AHEAAHDAMSDVEAT 184


>gi|47569977|ref|ZP_00240641.1| DNA polymerase III, epsilon chain [Bacillus cereus G9241]
 gi|47553375|gb|EAL11762.1| DNA polymerase III, epsilon chain [Bacillus cereus G9241]
          Length = 242

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 9/140 (6%)

Query: 39  KTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98
           K    F   + P G + +    KL GIT + L     F  I  +F  F   +++ ++   
Sbjct: 2   KVIGEFSELVKP-GARLTRHTTKLTGITKKDLSGVEKFPQIIEKFVQFIG-ESSIFVTWG 59

Query: 99  AKFDVGFINAELQRI--NKDPLDPSRIIDT---LSIARRKHPSSRNDLNSLCKRYGITIS 153
            + D  F++ +          +D  R ID    +  A  +       L S  ++ G+T  
Sbjct: 60  KE-DYRFLSHDCTLHSVECPRMDKERRIDLQKFVFQAYEELFEHTPSLQSAVEQLGLTWE 118

Query: 154 HRSKHGALLDSHLLSDVYIK 173
            +  H AL D+   + + +K
Sbjct: 119 GKQ-HRALADAENTAKILLK 137


>gi|268578587|ref|XP_002644276.1| Hypothetical protein CBG14047 [Caenorhabditis briggsae]
          Length = 292

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 27/196 (13%)

Query: 6   KMRKIVFDIETTGLDSKND---RIIEIGAVELLDYSKT---NRTFQVFLCPNGRKN-SPE 58
           + R I+ D ETT     +D    +I+   V     +KT      F  F+ P      S  
Sbjct: 2   QTRVIILDFETTSEGETHDYPFEVIQFSVVPYDVKAKTILEGHAFNKFVRPVVNPVLSKH 61

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFF---------------NEQNAEWIAHNAKFDV 103
             +  GI  E L    +F  ++ +F  +                + Q+   IA   ++  
Sbjct: 62  CTEFTGIKQESLNAADTFLVVYKQFLKWLQKNGFQERHFAIVSDSRQDMWRIA---QYQF 118

Query: 104 GFINAELQRINKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
             +   +  + +  ++  R  D  L   ++     R+++  +    GI  S R  H AL 
Sbjct: 119 RLVQETMPSMFRQWINIKRTFDDGLEDGQKNKLVGRSNMEKMLNYLGIEFSGR-AHDALS 177

Query: 163 DSHLLSDVYIKMMVGG 178
           D   L+ +  K++  G
Sbjct: 178 DCLTLAAITQKILEMG 193


>gi|260772965|ref|ZP_05881881.1| exodeoxyribonuclease I [Vibrio metschnikovii CIP 69.14]
 gi|260612104|gb|EEX37307.1| exodeoxyribonuclease I [Vibrio metschnikovii CIP 69.14]
          Length = 480

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 63/200 (31%), Gaps = 25/200 (12%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPEALKL 62
           ++      D ET G     DR  +   V   +D++       ++   P+    SPEA  +
Sbjct: 11  HQQTFFFLDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPSDYLPSPEAALI 70

Query: 63  HGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP 120
            GIT +  + +        +         N   + +N+ +FD         R   DP   
Sbjct: 71  TGITPQKAMAEGLPEPEFIARIHAELATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAW 130

Query: 121 SRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGAL 161
           S          +D +       P                L  L K  GI   H + H A+
Sbjct: 131 SWQQGNSRWDLLDVMRACHALRPEGIEWPENQEGFTSFKLEHLSKANGIE--HSNAHDAM 188

Query: 162 LDSHLLSDVYIKMMVGGSQI 181
            D     ++  K+     ++
Sbjct: 189 ADVIATIELAKKIKAAQPKL 208


>gi|322516220|ref|ZP_08069152.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           vestibularis ATCC 49124]
 gi|322125284|gb|EFX96649.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           vestibularis ATCC 49124]
          Length = 196

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 23/182 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            +N    I FD+E    ++ +    II++ A++L  + + ++ F  F+  +         
Sbjct: 1   MENLETYIAFDLE---FNTVDGVSHIIQVSAIKLNQHEEVDQ-FDSFVY-SDVPLQSFIN 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD 119
            L GIT   +   P   S+  +F  F    +   I +NA K D+  +       N   L+
Sbjct: 56  GLTGITAYKIAKAPKLESVLVDFKSFVG--DTPLIGYNALKSDLPILAE-----NGLDLE 108

Query: 120 PSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +D    A  +  S  N      L S+   +GI       H +L D+ + + +Y K 
Sbjct: 109 EQYALDVFDEAFDRRASDLNGIVNLKLTSVADFFGIK---GHGHNSLEDARMTAQIYEKF 165

Query: 175 MV 176
           + 
Sbjct: 166 LE 167


>gi|224827136|ref|ZP_03700232.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum
           2002]
 gi|224600645|gb|EEG06832.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum
           2002]
          Length = 202

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 11/169 (6%)

Query: 16  TTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP 74
           TT LD     ++ IGAV L            + + P GR  + E + LHG+    L    
Sbjct: 37  TTSLDVAEAELLTIGAVRLSGNRIVTSEALDLLVKP-GRPLTREGVGLHGLRPRDLSGGL 95

Query: 75  SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII---DTLSIAR 131
              +      DF   +    + +  +FD+  ++  L+ +    L   ++           
Sbjct: 96  DAEAAVRCLLDFIGGR--PVLGYYLEFDIAVLDKYLRPLLGIGLPNRQVEISGRYYDYKL 153

Query: 132 RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           R+ P+ R DL   +L    G+ +  R  H AL  +   + +Y+ +   G
Sbjct: 154 RQQPNGRVDLRMAALIDDLGVPVLPR--HDALNKAITAAMLYLALKRRG 200


>gi|89071984|ref|ZP_01158580.1| hypothetical protein SKA34_08118 [Photobacterium sp. SKA34]
 gi|89052085|gb|EAR57536.1| hypothetical protein SKA34_08118 [Photobacterium sp. SKA34]
          Length = 186

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 10/178 (5%)

Query: 4   KNKMRKIVFDIETT----GLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE 58
            N  R + FD+E      G  S+   IIEIG  EL L+  K  R  Q ++ P   + SP 
Sbjct: 1   MNFDRIVCFDLEMCCWNDGRTSRTGEIIEIGVAELDLNTGKIVRRAQHYVRPAKDEISPF 60

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKD 116
             +L GI  E + K+    S I       F  ++  + A     D   +    L +  K 
Sbjct: 61  CTELTGIKPEVVEKNGKPLSVILKSIEQKFGGRHKIYAA--WGHDDRILKKECLAKELKV 118

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           P      + TL   +R   + R    +  +  G+    R  H   +D++ L+ +   M
Sbjct: 119 PFREYLNLATLFKLQRHVTNKRLGQRAAMEIAGVEWEGRQ-HSGYVDAYNLARLAATM 175


>gi|291222534|ref|XP_002731271.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 954

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 28/176 (15%)

Query: 10  IVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT- 66
           +VFD+ETT  G+DS    I +I A    D       F  ++ P  +   P A  + G+T 
Sbjct: 497 VVFDLETTSFGIDSS---ICQIAA--SYDGKI----FDEYVDP-CQPIHPAASNVTGLTY 546

Query: 67  -------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL 118
                  +  L    S       F ++    N+  +AHN   FD   + + +QR      
Sbjct: 547 TCGKLFHNFNLVPTLSQKDALESFIEWI-PLNSVLVAHNCKNFDARILVSSVQRYGLLDK 605

Query: 119 DPSRII---DTLSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              +     DTLS+ R    P S     +L   Y    +  S H A  D H+L  +
Sbjct: 606 LKHKHCCFSDTLSVFREILPPRSSYSEENLVNDY--LHTEYSAHNAKHDVHMLQQL 659


>gi|321272268|gb|ADW80153.1| DNA polymerase III [Wolbachia endosymbiont wVitA of Nasonia
           vitripennis phage WOVitA1]
 gi|321272325|gb|ADW80207.1| putative DNA polymerase III [Wolbachia endosymbiont wVitB of
           Nasonia vitripennis phage WOVitB]
          Length = 74

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 47/67 (70%)

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            EL ++N   +  +R++DTL +AR+K P S   LN LCKR+ I+++ R+ HGAL+D+ LL
Sbjct: 1   MELGKLNAKLISSNRVLDTLPLARKKFPKSPASLNELCKRFDISLNDRTSHGALIDAQLL 60

Query: 168 SDVYIKM 174
           + VY ++
Sbjct: 61  AKVYAQL 67


>gi|313106840|ref|ZP_07793049.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 39016]
 gi|310879551|gb|EFQ38145.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 39016]
          Length = 478

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 26/193 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG+D + DR ++I  +   +  ++      ++  P+      P A  + GIT + L
Sbjct: 9   DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 68

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++  S +   +       +       +N+ +FD       L R   DP           
Sbjct: 69  AERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    G  + H   H AL D      +
Sbjct: 129 WDLIDMVRTAYALRPEGIQWPQLDGRLSLKLEMLTAANG--LEHGQAHDALSDVRAT--I 184

Query: 171 YIKMMVGGSQINF 183
            +  ++   Q   
Sbjct: 185 ALARLIRQRQPRL 197


>gi|13242597|ref|NP_077611.1| EsV-1-126 [Ectocarpus siliculosus virus 1]
 gi|13177400|gb|AAK14544.1|AF204951_126 EsV-1-126 [Ectocarpus siliculosus virus 1]
          Length = 206

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 73/195 (37%), Gaps = 30/195 (15%)

Query: 7   MRKIVFDIETTGLDSKND-----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M ++ FD+ETTGL  +             R++ I  V   + +  ++ + V   P     
Sbjct: 1   MPELFFDVETTGLPPRKANPETFEQYDSCRVVSIAWVLRDEKTVYSQRYSVT-DPGIADE 59

Query: 56  SPEALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           +  A  +HGI+ E   +   +   + S+F    +  + + +AHN  FD   ++AEL R+ 
Sbjct: 60  NIGAEFVHGISREVMDRYGNATKVVLSDFMADVDRSD-KIVAHNLDFDRSVVSAELFRMG 118

Query: 115 ----KDPLDPSRIIDTLSIARRKHPSSRN-------DLNSLCKRYGITISH--RSKHGAL 161
                  L   + + T+           +        L  L +       H   + H A+
Sbjct: 119 SSDDARRLMSFKSLCTMKSTTNLVRIPNSYGSYKWPKLEELHEFL---FGHVFENAHHAM 175

Query: 162 LDSHLLSDVYIKMMV 176
            D   +   Y  ++ 
Sbjct: 176 CDVDAMVKCYFTLLE 190


>gi|295098241|emb|CBK87331.1| Exodeoxyribonuclease I subunit C [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 478

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 56/178 (31%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G     DR  +  A+   D ++        +  P       P A+ + GIT +  
Sbjct: 18  DYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVMVTGITPQEA 77

Query: 71  KDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           +DK  S +       D F   N   + +N  +FD         R   DP   S       
Sbjct: 78  RDKGVSEAEFARRIHDLFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSWQNRNSR 137

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L +  GI   H + H A+ D +  
Sbjct: 138 WDLLDIMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIE--HSNAHDAMADVYAT 193


>gi|120553343|ref|YP_957694.1| exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
 gi|120323192|gb|ABM17507.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
          Length = 201

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 15/178 (8%)

Query: 2   IRKNKMRKIVFDIETTG---LDSKNDR-------IIEIGAVELLDYSKTNRTFQVFLCPN 51
           +R   +  +V D+E+T    L+ +  R       IIEIG        +  ++    + P 
Sbjct: 1   MRDKSLALLVVDLESTCWEDLNPEGKRQDVDSMEIIEIGCALATRDGQLLKSASFLVKPT 60

Query: 52  GRK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAE 109
                S     L GIT   + + P++         +  E + E+I      +D   + A+
Sbjct: 61  RFPQLSDFCTALTGITQSMVDEAPTYPEAIEALNKWLGELSDEFIWCSWGNYDRRHVEAQ 120

Query: 110 LQRINKDPLDPSRIIDTLS--IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            Q+    P         L     R      +N L +    + +T    S H  + D+ 
Sbjct: 121 NQQTGSRPAMSRYPHLNLKRIWRRTTGQKQKNGLANALAFHDLTFEG-SHHRGVDDAR 177


>gi|313500409|gb|ADR61775.1| SbcB [Pseudomonas putida BIRD-1]
          Length = 477

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 72/226 (31%), Gaps = 26/226 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ + DR +++  +    D ++ +    ++  P+      P A  + GIT + L
Sbjct: 9   DYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILPHPAACLVTGITPQLL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++        +       +       +N  +FD       L R   DP           
Sbjct: 69  AEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L K  GI   H   H AL D      +
Sbjct: 129 WDLIDIVRTAYALRPEGIQWPQQDGRTSLRLELLSKANGID--HGHAHEALSDVRAT--I 184

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            +  ++   Q        + R   +  + +  +  L      F+  
Sbjct: 185 ALARLIRQKQPKLYDWLFQLRSKHKVMEQIRLLQPLVHISGRFSAA 230


>gi|169794713|ref|YP_001712506.1| putative DNA exonuclease X [Acinetobacter baumannii AYE]
 gi|169147640|emb|CAM85503.1| putative DNA exonuclease X [Acinetobacter baumannii AYE]
          Length = 245

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 73/187 (39%), Gaps = 36/187 (19%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP----------NGRKNS 56
           M  ++FD ET      +  IIE  A+E++    +     + + P               S
Sbjct: 1   MTALIFDTET---HKLHGDIIEAAAMEVVFPQISAD---ILIIPTMFDFTKRYKPSEPIS 54

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
             A+ +H I DE L   PSF +     + +  E     I HN  +D+      ++R   D
Sbjct: 55  LGAMAVHHIVDEDLVKCPSFKT-----FKWPKENIQYLIGHNIDYDI----EAVKRAGAD 105

Query: 117 PLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISH-------RSKHGALLDSHLLS 168
                + I TL++AR   P+   ++L +L   Y I+          ++ H AL D     
Sbjct: 106 T-TGIKSICTLAMARYLWPTLEAHNLTALA--YHISRDRKSTRRGLKNAHSALNDCKTTY 162

Query: 169 DVYIKMM 175
            +   ++
Sbjct: 163 GLLHTIV 169


>gi|56461520|ref|YP_156801.1| EXOIII family exonuclease [Idiomarina loihiensis L2TR]
 gi|56180530|gb|AAV83252.1| EXOIII family exonuclease [Idiomarina loihiensis L2TR]
          Length = 192

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 58/170 (34%), Gaps = 15/170 (8%)

Query: 9   KIVFDIETT-------GLDSKND----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-S 56
            ++ D+E T       GLD K       IIE G V   D           + P    N S
Sbjct: 12  YLIVDLEATCWDGNVEGLDRKQTVDDMEIIEFGCVIAEDNGTVRDYRSFMVRPQSHPNLS 71

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
               +L  I    +   P + S+  E   +      E       +D   I+AE +R N  
Sbjct: 72  EFCTQLTSIAQSDVDAAPVYQSVVPEIDQWLKNYKLEGWGSWGNYDKNQISAEQRRHNLA 131

Query: 117 PLDPSRIIDTLSIARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDS 164
           P   S     +    R+   +     L +  K +G++    + H  + D+
Sbjct: 132 PEFFSLSHMNIKQEWRRGKVNSRSADLANAMKYHGLSFEG-THHRGIDDA 180


>gi|150015369|ref|YP_001307623.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
 gi|149901834|gb|ABR32667.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
          Length = 303

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 75/201 (37%), Gaps = 47/201 (23%)

Query: 7   MRKIVFDIETTGL----DSKND---------------RIIEIGAVELLDYSKTNRTFQVF 47
           M  I+ D+E   L    + + D                IIEIGAV++  Y K  +  + +
Sbjct: 1   MGYIIIDLEFNNLKNITNYQKDFFEKYGEFDSISLENEIIEIGAVKVDKYMKPIKEIREY 60

Query: 48  LCPNGRK-NSPEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQN----------AEWI 95
           + P      +P   ++  I  + L +K  SF    S+  D F + +          AE I
Sbjct: 61  IKPKIFPVINPIVTEITKIDMDILNEKGVSFEEAISKLKDMFEDGDVLCSWAKDDVAELI 120

Query: 96  A---HNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
               H    D+ ++N  L           +   T  +A +K    ++ L+ L     I +
Sbjct: 121 INAHHYNYNDLRWLNEYL---------DIQEYVTKILAHKKALGLKSALDEL----KIKV 167

Query: 153 SHRSKHGALLDSHLLSDVYIK 173
                H AL D+    +V+ +
Sbjct: 168 DDTKLHDALNDAKYTVEVFRR 188


>gi|291618007|ref|YP_003520749.1| SbcB [Pantoea ananatis LMG 20103]
 gi|291153037|gb|ADD77621.1| SbcB [Pantoea ananatis LMG 20103]
          Length = 473

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 58/189 (30%), Gaps = 25/189 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEA 59
           +  ++   +  D ET G     DR  +   +    +++        +  P       PEA
Sbjct: 1   MPASEFTFLFHDYETFGTSPSRDRPAQFAGLRTDSNFNPVGEPEVFYCRPPDDYLPQPEA 60

Query: 60  LKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDP 117
           + + GIT +       S +   +     F  +    + +N  +FD         R   DP
Sbjct: 61  VMITGITPQIAASRGVSEAEFAARIHALFTAEQTCVVGYNNVRFDDEVTRNIFYRNFYDP 120

Query: 118 LDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKH 158
              S          +D +       P                L  L K  G+  +H + H
Sbjct: 121 YGWSWQNGNSRWDLLDVMRACYALRPEGINWPENEDGFPSFRLEHLTKANGV--AHENAH 178

Query: 159 GALLDSHLL 167
            A+ D +  
Sbjct: 179 DAMSDVYAT 187


>gi|160689366|gb|ABX45541.1| polymerase C [Bacillus sonorensis]
          Length = 259

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           D+GFIN   +++ K     + +IDTL + R  +P    + LN+LCK++ I ++    H A
Sbjct: 1   DMGFINVAYKKLLKSEKAQNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58

Query: 161 LLDSHLLSDVYIKMMVGGSQIN--FGFKTNED 190
           + D+     + +KM+   ++ N  +  + NE+
Sbjct: 59  IYDTEATGYLLVKMLKDAAEKNILYHDQLNEN 90


>gi|149190027|ref|ZP_01868305.1| exonuclease I [Vibrio shilonii AK1]
 gi|148836193|gb|EDL53152.1| exonuclease I [Vibrio shilonii AK1]
          Length = 473

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 67/203 (33%), Gaps = 25/203 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSPEA 59
           + +++     FD ET G+    DR  +   V    +++       ++  P      SPEA
Sbjct: 1   MSQHQPTYFFFDYETWGVSPAKDRACQFAGVRTDENFNIIGEPLVIYCQPPSDYLPSPEA 60

Query: 60  LKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDP 117
             + GIT +  ++K  S     ++        N   + +N+ +FD         R   DP
Sbjct: 61  ALITGITPQLCQEKGLSEPEFIAKIHHELATPNTTSLGYNSIRFDDEVTRYTCYRNFIDP 120

Query: 118 LDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKH 158
              S          +D +       P                L  L    GI   H + H
Sbjct: 121 YAWSWQNGNSRWDLLDVMRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIE--HENAH 178

Query: 159 GALLDSHLLSDVYIKMMVGGSQI 181
            A+ D     ++  K+     ++
Sbjct: 179 DAMADVIATIELAKKVKAAQPKL 201


>gi|152941094|gb|ABS44984.1| histone mRNA 3' end-specific exonuclease [Bos taurus]
          Length = 349

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 75/201 (37%), Gaps = 16/201 (7%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 130 ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 189

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGF---INAELQRIN 114
            GIT + +    +F  +  +  D+        +    I  +  +D+     I  +L R+ 
Sbjct: 190 TGITQDQVDKADTFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRLK 249

Query: 115 KDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             P       I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++
Sbjct: 250 YPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR-PHSGLDDSKNIARIAVR 308

Query: 174 MMVGGSQINFGFKTNEDRFFK 194
           M+  G ++    K +  +   
Sbjct: 309 MLQDGCELRVNEKMHAGQLMS 329


>gi|84000359|ref|NP_001033281.1| three prime histone mRNA exonuclease 1 [Bos taurus]
 gi|81673840|gb|AAI09682.1| Three prime histone mRNA exonuclease 1 [Bos taurus]
 gi|296472395|gb|DAA14510.1| three prime histone mRNA exonuclease 1 [Bos taurus]
          Length = 349

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 75/201 (37%), Gaps = 16/201 (7%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 130 ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 189

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGF---INAELQRIN 114
            GIT + +    +F  +  +  D+        +    I  +  +D+     I  +L R+ 
Sbjct: 190 TGITQDQVDKADTFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRLK 249

Query: 115 KDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             P       I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++
Sbjct: 250 YPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR-PHSGLDDSKNIARIAVR 308

Query: 174 MMVGGSQINFGFKTNEDRFFK 194
           M+  G ++    K +  +   
Sbjct: 309 MLQDGCELRVNEKMHAGQLMS 329


>gi|312865719|ref|ZP_07725943.1| DNA polymerase III, epsilon subunit [Streptococcus downei F0415]
 gi|311098840|gb|EFQ57060.1| DNA polymerase III, epsilon subunit [Streptococcus downei F0415]
          Length = 196

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 33/181 (18%)

Query: 9   KIVFDIETTGLD--SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            I FD+E    +  +    II++ AV+   + +    F  +   +          L GIT
Sbjct: 7   YIAFDLE---FNTVAGVSHIIQVSAVKFAGHEEVA-HFDSY-AYSSVPLQSFINGLTGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIID 125
            + +   P    + ++F  F  E     I +NA K D+  +       N   L     +D
Sbjct: 62  ADKIAKAPKLEQVLADFRTFIGE--TPLIGYNALKSDLPLLAE-----NGLDLSEHYRVD 114

Query: 126 TLSIARRKHPSSRNDLN----------SLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               A       R  L+          ++ +  GI+      H +L D+ + + VY K +
Sbjct: 115 VFEQA-----FERRSLDLNGIANLQLHTVAEFLGIS---GRSHDSLEDARMTALVYEKFL 166

Query: 176 V 176
            
Sbjct: 167 E 167


>gi|119476956|ref|ZP_01617237.1| Exonuclease I [marine gamma proteobacterium HTCC2143]
 gi|119449763|gb|EAW31000.1| Exonuclease I [marine gamma proteobacterium HTCC2143]
          Length = 478

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 63/194 (32%), Gaps = 27/194 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G D   DR  +   V    D++       +F  P       PEA  + GIT +  
Sbjct: 10  DYETFGADPARDRPSQFAGVRTDSDFNIIGEPLVIFCKPAADILPQPEACLITGITPQQA 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L+     +    +    F++     + +N+ +FD       L R   DP           
Sbjct: 70  LEQGVCEAEFIRQIHAEFSQPGTCAVGYNSVRFDDEVSRYTLYRNFYDPYAREWQNGNSR 129

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              ID + +     P                L  L    GI  SH S H AL D H    
Sbjct: 130 WDIIDMVRVCCALRPEGINWPTHDNGMPSFKLEQLTAANGI--SHESAHDALSDVHAT-- 185

Query: 170 VYIKMMVGGSQINF 183
           + +  ++   Q   
Sbjct: 186 IAMAKLIKQKQPKL 199


>gi|307825107|ref|ZP_07655328.1| Exodeoxyribonuclease I [Methylobacter tundripaludum SV96]
 gi|307733855|gb|EFO04711.1| Exodeoxyribonuclease I [Methylobacter tundripaludum SV96]
          Length = 501

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 68/207 (32%), Gaps = 27/207 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFL 70
           D ET G D + D+ ++   +    D++  +    V+  P       PEA  + GIT +  
Sbjct: 11  DYETFGTDPQRDKPVQFAGIRTDFDFNVVDDPLVVYCKPAEDCLPHPEACLITGITPQLA 70

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           + K            +   + N   + +N+ +FD       L R   DP           
Sbjct: 71  EQKGVCEAEFIRLIHEQLAQPNTCTLGYNSLRFDDEVTRNCLYRNFYDPYAREWQNGNSR 130

Query: 124 ---IDTLSIARRKHP-----------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              ID +   R   P                L+ L +   I  +H + H AL D +    
Sbjct: 131 WDLIDVVRATRALRPDGIVWPVNEEGGPSFRLDQLTRVNNI--AHEAAHDALSDVYAT-- 186

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEE 196
           + I  +V  +Q          R   E 
Sbjct: 187 LAITKLVKQAQPKLYQFLLRHRVKGEA 213


>gi|194228403|ref|XP_001492131.2| PREDICTED: similar to Three prime repair exonuclease 2 (3-5
           exonuclease TREX2) [Equus caballus]
          Length = 269

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 72/195 (36%), Gaps = 31/195 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIEI---GAVELLDYSKTNRTFQVFLCP-----------NGRK 54
            +  D+E TGL S +  I EI           +     F + + P             R 
Sbjct: 43  FVFLDLEATGLPSVDPEIAEISLFAVHRSSLENPERDEFGIPVLPRVLDKLTLCMSPERP 102

Query: 55  NSPEALKLHGITDEFLK--DKPSFS-SIFSEFWDFFNEQNAE--WIAHN-AKFDVGFINA 108
            + +A ++ G++ E L    K  F  ++      F + Q +    +AHN   +D   +  
Sbjct: 103 FTAKASEITGLSSEGLARCGKAGFDSAVVRMLQAFLSRQESPICLVAHNGFDYDFPLLCT 162

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKH 158
           EL+R+       +  +DTL   R    +  +           L SL +RY      ++ H
Sbjct: 163 ELRRLGARLPRDTVCLDTLPALRGLDHAHSHGTRAQSCKGYSLGSLFRRY-FQEEPKAAH 221

Query: 159 GALLDSHLLSDVYIK 173
            A  D H L  V++ 
Sbjct: 222 SAEGDVHTLLMVFLH 236


>gi|260778470|ref|ZP_05887362.1| exodeoxyribonuclease I [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604634|gb|EEX30929.1| exodeoxyribonuclease I [Vibrio coralliilyticus ATCC BAA-450]
          Length = 474

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 66/204 (32%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSPE 58
           M + ++     FD ET G     DR  +   V   +D++       ++  P      SPE
Sbjct: 1   MQQAHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPE 60

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +    K        ++  +  +  N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKAASKGLPEPEFITKIHEQLSTPNTINLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENEEGFISFKLEHLSVANGIE--HENA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIEMAKKVKAAQPKL 202


>gi|224370128|ref|YP_002604292.1| SbcB [Desulfobacterium autotrophicum HRM2]
 gi|223692845|gb|ACN16128.1| SbcB [Desulfobacterium autotrophicum HRM2]
          Length = 471

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 21/186 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            + +DIET+GL+   D+I+   A+   L+  + +RT  V    N    SP A   H +T 
Sbjct: 4   FLFYDIETSGLNPAFDQILTFAAIRTDLELREIDRTSIVISLRNDIVPSPGAFITHRLTP 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP-----S 121
           E LKD        +      N  +   I +N+  FD  F+     R   DP         
Sbjct: 64  EDLKDGLCEYQGVALIHRLLNTPDTISIGYNSLGFDDEFLRFAFYRNLLDPYTHQYANDC 123

Query: 122 RIIDTLSIA---RRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDSHLLS 168
             +D L IA   R   P   +           L  + ++  +  S R  H A+ D     
Sbjct: 124 ARMDLLPIATLYRIFKPDGIHWPVIDDKASMRLELISEKNNLVQSGR-AHDAMTDVEATL 182

Query: 169 DVYIKM 174
            +  ++
Sbjct: 183 ALARRL 188


>gi|90578520|ref|ZP_01234331.1| hypothetical protein VAS14_15754 [Vibrio angustum S14]
 gi|90441606|gb|EAS66786.1| hypothetical protein VAS14_15754 [Vibrio angustum S14]
          Length = 186

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 10/178 (5%)

Query: 4   KNKMRKIVFDIETT----GLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE 58
            N  R + FD+E      G  S+   IIEIG  EL L+  K  R  Q ++ P   + SP 
Sbjct: 1   MNFDRIVCFDLEMCCWNDGRTSRTGEIIEIGVAELDLNTGKIVRRAQHYVRPAKDEISPF 60

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKD 116
             +L GI  E + K+    S I       F  ++  + A     D   +    L +  K 
Sbjct: 61  CTELTGIKPEVVEKNGKPLSVILKSIEQKFGGRHKIYAA--WGHDDRILKKECLAKELKV 118

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           P      + TL   +R   + R    +  +  G+    R  H   +D++ L+ +   M
Sbjct: 119 PFREYLNLATLFKLQRHVTNKRLGQRAAMEIAGVEWEGRQ-HSGYVDAYNLARLAATM 175


>gi|110835017|ref|YP_693876.1| DNA polymerase III subunit epsilon [Alcanivorax borkumensis SK2]
 gi|110648128|emb|CAL17604.1| nuclease, putative [Alcanivorax borkumensis SK2]
          Length = 173

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 67/174 (38%), Gaps = 17/174 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS--PEALKLHGITD 67
           +  D ETTGLDS+   ++ I AV + +      + Q         +S   +++ +H +  
Sbjct: 2   VAIDCETTGLDSRTAELVSIAAVVIKEGRVL--SSQSLNVKLAAPDSLREDSICIHRLRP 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDT 126
             L+   S            + +    +     FDV  IN  L+  +  D  + +  +  
Sbjct: 60  VDLEGGASIREALEALLALIDNR--PLVGWCVAFDVAMINRYLRPLMGFDLPNDTLELSA 117

Query: 127 LSIARRKH------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L   + ++      P  R   +++     + +  R  H A  D+   + +Y+++
Sbjct: 118 LYQRKMRYWQPDITPDLRF--DAMASALQVPVIER--HTARGDAVTSALMYLQL 167


>gi|88810619|ref|ZP_01125876.1| DNA polymerase III subunit epsilon [Nitrococcus mobilis Nb-231]
 gi|88792249|gb|EAR23359.1| DNA polymerase III subunit epsilon [Nitrococcus mobilis Nb-231]
          Length = 166

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 16/151 (10%)

Query: 34  LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE 93
           + D   T   F  ++ P+  +    ALK+HG++   L DKP FS I   F DF   +   
Sbjct: 1   MRDGEPTGENFHRYINPDI-EVEESALKIHGLSSAMLADKPLFSEIAPYFCDFI--RGRA 57

Query: 94  WIAH----------NAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNS 143
            IA+               +G +    +    D LD    + +L++  R      ++L +
Sbjct: 58  VIAYKLDQVAALEREFVHLMGRLLPPWKARGWD-LDEQCSLQSLAMLARVVEVPDDELEA 116

Query: 144 LCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +C  Y I        GA  ++  +  VY  M
Sbjct: 117 ICAHYDIEPPKSP--GAEDEAKCVGAVYAAM 145


>gi|146312271|ref|YP_001177345.1| exonuclease I [Enterobacter sp. 638]
 gi|145319147|gb|ABP61294.1| Exodeoxyribonuclease I subunit C [Enterobacter sp. 638]
          Length = 476

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 25/181 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G     DR  +  A+    D++        +  P       P A+ + GIT +  
Sbjct: 16  DYETFGTSPSLDRPSQFAAIRTDADFTIIGEPEVFYCKPADDYLPQPGAVIVTGITPQEA 75

Query: 71  KDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           ++K  + +         F   N   + +N  +FD       L R   DP   S       
Sbjct: 76  REKGVNEAEFARRIHALFTVPNTCVVGYNNIRFDDEVTRNVLYRNFYDPYAWSWQNRNSR 135

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              +D +       P                L  L +  GI   H + H A+ D +   +
Sbjct: 136 WDLLDVMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIE--HSNAHDAMADVYATIE 193

Query: 170 V 170
           +
Sbjct: 194 M 194


>gi|148549564|ref|YP_001269666.1| exonuclease I [Pseudomonas putida F1]
 gi|148513622|gb|ABQ80482.1| Exodeoxyribonuclease I subunit C [Pseudomonas putida F1]
          Length = 477

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 72/226 (31%), Gaps = 26/226 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ + DR +++  +    D ++ +    ++  P+      P A  + GIT + L
Sbjct: 9   DYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILPHPAACLVTGITPQLL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++        +       +       +N  +FD       L R   DP           
Sbjct: 69  AEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L K  GI   H   H AL D      +
Sbjct: 129 WDLIDIVRTAYALRPEGIEWPQQDGRTSLRLELLSKANGID--HGHAHEALSDVRAT--I 184

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            +  ++   Q        + R   +  + +  +  L      F+  
Sbjct: 185 ALARLIRQKQPKLYDWLFQLRSKHKVMEQIRLLQPLVHISGRFSAA 230


>gi|303232128|ref|ZP_07318831.1| exonuclease [Veillonella atypica ACS-049-V-Sch6]
 gi|302513234|gb|EFL55273.1| exonuclease [Veillonella atypica ACS-049-V-Sch6]
          Length = 327

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 73/192 (38%), Gaps = 17/192 (8%)

Query: 7   MRKIVFDIE-----TTGLD-------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M  I+FD+E     +  +             II+IGA++L +  +   +F +++ P    
Sbjct: 1   MDYIIFDLEWNQPYSNDISFMKRARMPLTGEIIQIGAIKLNENLEIVDSFTMYVKPKYLP 60

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
                   L GIT++ L     F   +S F  +   ++   ++     D+  +   L   
Sbjct: 61  HMHKHVKALTGITNQDLNRGVPFRVAYSHFQQWCG-KDYMLLSW-GADDILILRENLLLH 118

Query: 114 NKDPLDPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               +D     D   L   +R   + +  +    +   I+    S H AL D+   + + 
Sbjct: 119 KLKSIDYDSWADAQMLYSYQRYGTTQQYSVAHAMEDLHISSEELSAHNALHDAIFTAHIC 178

Query: 172 IKMMVGGSQINF 183
            K+ +  + +++
Sbjct: 179 QKLDLPTALLHY 190


>gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040338|gb|ACT57134.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 471

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 67/188 (35%), Gaps = 26/188 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            +++D ET G D   DR  +   V +   + K   T   F  P +     PEA+ + GIT
Sbjct: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64

Query: 67  DE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-----PLD 119
            +  L+D    +        FF+  N   I +N  +FD  +      R   D       +
Sbjct: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124

Query: 120 PSRIIDTLSIARRKH---PSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
            +   D L + R  +   P                L  L    GI   H + H A  D +
Sbjct: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182

Query: 166 LL-SDVYI 172
              + V++
Sbjct: 183 ATLALVWL 190


>gi|296273794|ref|YP_003656425.1| exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis
           DSM 7299]
 gi|296097968|gb|ADG93918.1| Exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis
           DSM 7299]
          Length = 173

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 64/182 (35%), Gaps = 30/182 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL--LDYSKTN-RTFQVFLCPNGRKNSPEALKLHGIT 66
           I+ D ET         +IE  AV+L  ++        F  +   +    +P + ++H +T
Sbjct: 2   IILDFETN--SHNEHDVIEAAAVKLELVNGEYVVCDKFHRYYL-SRYPVNPYSYEVHKLT 58

Query: 67  DEFL-------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            E +            F     +F +F +      +AHN  F++  +        +  ++
Sbjct: 59  PEAILKIRQNSSYASYFKED-EDFVEFCSGVET-LVAHNISFELRHL--------RQIVN 108

Query: 120 PSRIIDTLSIARRKHPSSRND-------LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               I T+   +    +   +       L+ +C  YGI       H A  D     ++  
Sbjct: 109 FKNHICTMKENKHIVKALNKNAKIKNPTLDEVCFYYGIEFDENKHHSATYDVSKTFEILK 168

Query: 173 KM 174
           +M
Sbjct: 169 RM 170


>gi|255021393|ref|ZP_05293441.1| Exodeoxyribonuclease X [Acidithiobacillus caldus ATCC 51756]
 gi|254969256|gb|EET26770.1| Exodeoxyribonuclease X [Acidithiobacillus caldus ATCC 51756]
          Length = 220

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 78/236 (33%), Gaps = 33/236 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEALKLHG 64
           M  ++FD ETTG  +    +IE   + + +         F     P+ +     A+ +H 
Sbjct: 1   MAALIFDTETTGRIAP--ELIEAAWLRVGELRTLAVEEEFVRRYRPS-KPIEMGAMAVHH 57

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I DE L+D P      SEF           I H+  +D   I               + I
Sbjct: 58  ILDEDLEDCPP----ASEFS--LPADTEYLIGHSIDYDWEVIGK----------PEVKRI 101

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISH-----RSKHGALLDSHLLSDVYIKMMVGG 178
            T +++R+  P    +  ++L   +           ++ H AL D       + ++++  
Sbjct: 102 CTFAMSRKLWPEVDSHSQSALLFYFSKDRRKTRDNLKNAHSALADVK-----FCRIILNR 156

Query: 179 SQINFGFKTNEDRF-FKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
             +     + E  + F E  +    +   K        +  +        +  +  
Sbjct: 157 ILLAVRPASWEALWEFSERARIPETMPFGKHRGVRIVDLPDDYRRWALSNLTEIDP 212


>gi|85710354|ref|ZP_01041419.1| DNA polymerase III subunit epsilon [Erythrobacter sp. NAP1]
 gi|85689064|gb|EAQ29068.1| DNA polymerase III subunit epsilon [Erythrobacter sp. NAP1]
          Length = 223

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 10/172 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D E  GL  K   +++ G         T +  +     +    + EA+ +HGI ++
Sbjct: 44  FLALDFELDGL-RKGAHLLQAGWTPFTAGGITFQNARSLDIRSDATLNREAVTVHGIGED 102

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                     +  E       +    +AH A  +V  I    + +    L P R I TL 
Sbjct: 103 RASAGLPIGKVAEELLTALAGR--VIVAHAAAIEVTAIKEAAKSLYNVNL-PVRSICTLR 159

Query: 129 IARRKHPSS----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           + +  HP +       L    +RYG+       H AL D+   ++++   + 
Sbjct: 160 LEKHIHPGNFGADAYRLGPTRERYGLP--EYRAHDALTDAIAAAELFQAQLT 209


>gi|113868398|ref|YP_726887.1| hypothetical protein H16_A2430 [Ralstonia eutropha H16]
 gi|113527174|emb|CAJ93519.1| hypothetical membrane associated protein,contains exonuclease
           domain [Ralstonia eutropha H16]
          Length = 247

 Score = 73.7 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 63/194 (32%), Gaps = 20/194 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCPNG-RKNSPEALK 61
           MR  +   ETTGL    D  + IG     V     +        +            A  
Sbjct: 1   MRVAIVSTETTGLTPA-DEPVSIGLLLVEVAPRAGTLLREITDYYGSQEPTVPIGEAATG 59

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            HG+T E L+ +  F           ++ +   +AH A+F    +   L       +   
Sbjct: 60  THGLTAEMLRGR-RFD--VDAIRAIVDDAD-VLVAHGAEFHARMLGKVL-----PDIQHK 110

Query: 122 RIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD-VYIKMMVGG 178
           R   ++   R  +   +  + L++LC+   I         AL D   LS  ++  M    
Sbjct: 111 RWRCSVRQVRWSQYFHAPNHKLDTLCEHLRIFRPRPQV--ALDDCLALSRLLFQHMGAAD 168

Query: 179 SQINFGFKTNEDRF 192
                GF   E  F
Sbjct: 169 QATPMGFLLAESDF 182


>gi|150400976|ref|YP_001324742.1| exonuclease RNase T and DNA polymerase III [Methanococcus aeolicus
           Nankai-3]
 gi|150013679|gb|ABR56130.1| Exonuclease RNase T and DNA polymerase III [Methanococcus aeolicus
           Nankai-3]
          Length = 175

 Score = 73.3 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 28/181 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVE--LLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           I+ D ET      +  +IE+GA++   +D   K    F  +   +    +  AL++H +T
Sbjct: 2   IILDFETNTRKPYD--VIEVGAIKVAFIDGEYKKIDAFHRY-YYSKYGINQRALEVHRLT 58

Query: 67  DE---FLKDKPSFSSIFS---EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +    L+   +++  F    EF +F  + N   +AHN  F++ ++         D +  
Sbjct: 59  PQKIKNLRGGENYAKYFRQDNEFIEFCQDCNT-LVAHNITFELRYL--------GDMVTF 109

Query: 121 SRIIDTLSIARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              I T++  +        +       L   C  YGI       H A+ D     +V   
Sbjct: 110 DNHICTMAQNKHIVRAVDIRGGLKPPKLIEACNHYGIDFDEEQYHSAIYDVTKTLEVLNC 169

Query: 174 M 174
           M
Sbjct: 170 M 170


>gi|188576332|ref|YP_001913261.1| exonuclease I [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520784|gb|ACD58729.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 481

 Score = 73.3 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 62/182 (34%), Gaps = 25/182 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV               F+ P +    SP A  + GIT
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 67  DEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI- 123
            +  L++  + +  F+   +  +      + +N+ +FD  F+   L R   DP +     
Sbjct: 65  PQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREWRG 124

Query: 124 -------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                  +D L +     P                L  L       +     H AL D +
Sbjct: 125 GNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASA--NDVREGDAHEALSDVY 182

Query: 166 LL 167
             
Sbjct: 183 AT 184


>gi|154340904|ref|XP_001566405.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063728|emb|CAM39913.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 405

 Score = 73.3 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 16/208 (7%)

Query: 9   KIVFDIETTGLDSKN---DRIIEI-GAVELLDYSKTNR--TFQVFLCP-NGRKNSPEALK 61
            IV D+E T           +IEI G +  +   + +R  +F  ++ P    + +P   +
Sbjct: 76  IIVVDVEATCEQHNRNYPHEVIEIPGVLIDVRTGQVDRARSFHTYVKPWRNPRLTPFCTQ 135

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE---QNA-EWIAHNAKFDV-GFINAE--LQRIN 114
           L GIT E +   PS +     F  ++ E   + A    A +  +D   FI+    L+   
Sbjct: 136 LTGITQEMVDAAPSITEAVQLFEKWYRETIPRGAKTIFAADGPWDFKNFIHEHHILRDHV 195

Query: 115 KDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             P      +D   + A R +      L+++ ++  +    R  H    D++ ++ + + 
Sbjct: 196 GFPSIFYEYLDIRTTFAHRLNHGVPIKLDAMLRKMHLRFDGR-PHSGFDDAYNIARLTVA 254

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVP 201
           MM  G  ++F      D  +      VP
Sbjct: 255 MMKVGCVLDFVIAIPLDDEYHYHLDGVP 282


>gi|150398789|ref|YP_001322556.1| exonuclease RNase T and DNA polymerase III [Methanococcus vannielii
           SB]
 gi|150011492|gb|ABR53944.1| Exonuclease RNase T and DNA polymerase III [Methanococcus vannielii
           SB]
          Length = 189

 Score = 73.3 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 69/186 (37%), Gaps = 27/186 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL      I ++  +   +     + F  +   +    S  A ++HG+T +
Sbjct: 2   YVFLDTETTGLHPGQ--IAQLSYLVTDEELNIKKAFNQY--YSVEHMSRSAARIHGLTQD 57

Query: 69  FLKD---KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            L++      F     E     + + +  I HN  FD+ F+ AE++R+ ++ +   +   
Sbjct: 58  ILEELSSGLVFEDTIKEVLS--DLKYSVIIGHNISFDIRFLKAEIERLGEEYVPKEKFCT 115

Query: 126 TLSIARR-KHPS----SRNDLNSLCKRY------GITISHRS-------KHGALLDSHLL 167
                +  K P      R  L  L          G+  +  +        H A  D+ ++
Sbjct: 116 MCHFTKICKIPGVRQYKRPKLIELMDYLKQCPKEGLKFTKNTYGCSDVGFHDARFDTGVM 175

Query: 168 SDVYIK 173
              Y K
Sbjct: 176 YLCYKK 181


>gi|258574079|ref|XP_002541221.1| RNA exonuclease 4 [Uncinocarpus reesii 1704]
 gi|237901487|gb|EEP75888.1| RNA exonuclease 4 [Uncinocarpus reesii 1704]
          Length = 607

 Score = 73.3 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 63/167 (37%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D E  G+    DR   +  V +++++  ++ +  F+ P          K+ GIT 
Sbjct: 410 KYIAIDCEMVGVGPNPDRDSALARVSIVNFTG-DQVYDSFVKPKETVTDWR-TKVSGITP 467

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + D  SF  +  +  +  + +    I H    D+  +      +   P    R   + 
Sbjct: 468 MSMIDARSFEEVQKDVAELLDGR--ILIGHAVSNDLNAL------LLSHPKRDIRDTSSH 519

Query: 128 SIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIK 173
              R+    ++  L  L     G+TI   + H ++ D+     ++ +
Sbjct: 520 IPYRKIAGGAKPRLKVLAAELLGVTI-QGAAHSSVEDARATMLLFQR 565


>gi|332197465|gb|AEE35586.1| polynucleotidyl transferase, ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 495

 Score = 73.3 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 20/169 (11%)

Query: 9   KIVFDIETTGLDSKNDR---IIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLH- 63
              FD+ET  + +K+     I+E GA+ +         ++   + P           L  
Sbjct: 13  IAFFDLETA-VPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSL---ISTLTK 68

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLD 119
              GIT + +    +FS I  + +D  + +   W  HN  +FD   I      I   P +
Sbjct: 69  RRSGITRDGVLSAHTFSEIADKVYDILHGR--IWAGHNIIRFDCVRIREAFAEIGLSPPE 126

Query: 120 PSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           P   ID+LS+  +K    +    + SL   +G+       H +L D  +
Sbjct: 127 PKATIDSLSLLSQKFGKRAGDMKMASLATYFGL---GDQAHRSLDDVRM 172


>gi|222096989|ref|YP_002531046.1| exonuclease [Bacillus cereus Q1]
 gi|221241047|gb|ACM13757.1| exonuclease family protein [Bacillus cereus Q1]
          Length = 242

 Score = 73.3 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 9/140 (6%)

Query: 39  KTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98
           K    F   + P G + +    KL GIT + L +   F  I   F  F   +++ ++   
Sbjct: 2   KIIGEFSELVKP-GARLTRHTTKLTGITKKDLMNVEKFPQIIERFIQFIG-EDSIFVTWG 59

Query: 99  AKFDVGFINAELQRINKDPLDP--SRIIDT---LSIARRKHPSSRNDLNSLCKRYGITIS 153
            + D  F++ +      +       R ID    +  A  +       L S  ++ G+   
Sbjct: 60  KE-DYRFLSHDCTLHGVECPCMEKERRIDLQKFVFQAYEELFEHTPSLQSAVEQLGLIWE 118

Query: 154 HRSKHGALLDSHLLSDVYIK 173
            +  H AL D+   +++ +K
Sbjct: 119 GKQ-HRALADAENTANILLK 137


>gi|302672277|ref|YP_003832237.1| exonuclease family protein [Butyrivibrio proteoclasticus B316]
 gi|302396750|gb|ADL35655.1| exonuclease family protein [Butyrivibrio proteoclasticus B316]
          Length = 311

 Score = 73.3 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 24/183 (13%)

Query: 9   KIVFDIETTGLDSKND------------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
            I+FD+E     ++ D             I+EIGAV+L +  +    F   + P   K  
Sbjct: 4   YIIFDLE----WNQGDAPVVENGKTLNFEIVEIGAVKLNEKKEKIGEFSRLIRPQVFKQM 59

Query: 57  PEAL-KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
                KL  +T E L+    F+ +  EF  +   ++ ++ +     D+      L     
Sbjct: 60  HRITGKLIHLTMEDLESGEPFTDVADEFLKWCG-EDPQFCSW-GPLDLTEFQRNLDFFGM 117

Query: 116 DPLD--PSRIIDTLSIARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             L   P    D   +        ++   L+++     +       H AL D+   + ++
Sbjct: 118 PLLSDRPIAFYDVQKLYSIAFDDGKSRKALSTVVDEMQMD-KDIPFHRALADAEYTARIF 176

Query: 172 IKM 174
            K+
Sbjct: 177 RKL 179


>gi|146280991|ref|YP_001171144.1| hypothetical protein PST_0596 [Pseudomonas stutzeri A1501]
 gi|145569196|gb|ABP78302.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 185

 Score = 73.3 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 72/178 (40%), Gaps = 13/178 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++ +K   +  DIE +G       ++ IGA    +       F  FL P  ++  P AL+
Sbjct: 1   MKADKEIFVSVDIEASGPIPGKYSMLSIGACVASN---PAEQFSCFLKPISQEFVPAALE 57

Query: 62  LHGITDEFLKDKPSFS-SIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQR-IN 114
           + G++ E L+++        ++F  +       +Q   ++  NA FD  F+N      + 
Sbjct: 58  VTGLSLERLREEGLEPGEAMAQFRAWVESLADADQRVVFVGFNASFDWSFVNYYFHLFLG 117

Query: 115 KDPLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           ++P   +   I ++     +        + + K   +       H AL D+   ++++
Sbjct: 118 ENPFGIAALDIKSMYFGASECAWKSTRSSEIEKV--VNPESSGNHDALDDAVYQAELF 173


>gi|254228381|ref|ZP_04921808.1| exonuclease family [Vibrio sp. Ex25]
 gi|262394467|ref|YP_003286321.1| exodeoxyribonuclease I [Vibrio sp. Ex25]
 gi|151939187|gb|EDN58018.1| exonuclease family [Vibrio sp. Ex25]
 gi|262338061|gb|ACY51856.1| exodeoxyribonuclease I [Vibrio sp. Ex25]
          Length = 473

 Score = 73.3 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 73/219 (33%), Gaps = 26/219 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M + N+     FD ET G +   DR  +   V    +++       ++  P       PE
Sbjct: 1   MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNVIGEPLVMYCQPPADYLPSPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +  +++  S     ++      + N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKTVQEGLSEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI-NFGFKTNEDRFFKE 195
           H A+ D     ++  K+     ++ ++ F   + R   E
Sbjct: 179 HDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNE 217


>gi|91079959|ref|XP_969470.1| PREDICTED: similar to three prime repair exonuclease 1 [Tribolium
           castaneum]
 gi|270003252|gb|EEZ99699.1| hypothetical protein TcasGA2_TC002459 [Tribolium castaneum]
          Length = 319

 Score = 73.3 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 15/137 (10%)

Query: 9   KIVFDIETTGLDSKND---RIIEIGAVELLDYSKTNRTF-------QVFLCPNGRKNSPE 58
            +  D+ETTGL        RI E+ AV +         F        +   P  +  SPE
Sbjct: 34  FVFLDLETTGLPHLEHNKTRITELCAVSVRADHIELGCFPRVQNKLSLCFNP-MKMISPE 92

Query: 59  ALKLHGITDEFLKDKPSF-SSIFSEFWDFF--NEQNAEWIAHN-AKFDVGFINAELQRIN 114
           A  L G++++ L+ + SF S        +   N++    +AHN  +FD   + AE+++  
Sbjct: 93  ATSLTGLSNDLLEYQASFSSDAVDVIRKWLEMNQKPICLVAHNGNRFDYPILRAEVEKTR 152

Query: 115 KDPLDPSRIIDTLSIAR 131
               +    +D+L+  R
Sbjct: 153 NKLPEDILCLDSLNAFR 169


>gi|289669559|ref|ZP_06490634.1| exonuclease I [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 481

 Score = 72.9 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 62/182 (34%), Gaps = 25/182 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV               F+ P +    SP A  + GIT
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 67  DEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI- 123
            +  L++  + +  F+   +  +      + +N+ +FD  F+   L R   DP +     
Sbjct: 65  PQHALREGITEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREWRG 124

Query: 124 -------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                  +D L +     P                L  L       +     H AL D +
Sbjct: 125 GNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLANA--NDVREGDAHEALSDVY 182

Query: 166 LL 167
             
Sbjct: 183 AT 184


>gi|289663122|ref|ZP_06484703.1| exonuclease I [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 481

 Score = 72.9 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 62/182 (34%), Gaps = 25/182 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV               F+ P +    SP A  + GIT
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 67  DEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI- 123
            +  L++  + +  F+   +  +      + +N+ +FD  F+   L R   DP +     
Sbjct: 65  PQHALREGITEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREWRG 124

Query: 124 -------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                  +D L +     P                L  L       +     H AL D +
Sbjct: 125 GNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLANA--NDVREGDAHEALSDVY 182

Query: 166 LL 167
             
Sbjct: 183 AT 184


>gi|319650362|ref|ZP_08004505.1| sporulation inhibitor KapD [Bacillus sp. 2_A_57_CT2]
 gi|317397923|gb|EFV78618.1| sporulation inhibitor KapD [Bacillus sp. 2_A_57_CT2]
          Length = 206

 Score = 72.9 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 53/174 (30%), Gaps = 17/174 (9%)

Query: 9   KIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPE 58
            +  D E T         G   +   IIE G V ++  ++    F  ++ P      S  
Sbjct: 7   YLFIDFEFTMPEKGSAFRGFFPE---IIEAGIVSVI-GNQVCEEFSSYVTPVRFPKLSER 62

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                 IT E +     F  +  +  D    +    +      D+  +         D  
Sbjct: 63  CKSFLHITQEQVDQGIDFLELVKKMIDMNRNRPCTIVTW-GNMDMKVLRNNCTHAGVDFP 121

Query: 119 DPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              R +D     +R         L    + YG   + +  H AL D+    +++
Sbjct: 122 FRGREVDLSMEYKRFFGDQNQTGLWKAVQEYGKEGTGK-HHRALDDALTTYNIF 174


>gi|316972225|gb|EFV55912.1| three prime repair exonuclease 1 [Trichinella spiralis]
          Length = 361

 Score = 72.9 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 51/148 (34%), Gaps = 30/148 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--------------------LC 49
           +  D+ETTGL  K   I EI  V         R F  F                    + 
Sbjct: 15  VFLDVETTGLVGKQPSITEIAVVA-----VGRRHFLTFSNNPSAYTKLPRVMSKLVSVIN 69

Query: 50  PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEWIAHNA-KFDVGFI 106
           P  +  SP A  + G+    +  +P+F+  +     F     Q    IAHN  +FD   +
Sbjct: 70  P-AKSISPTASLITGLNPANVAAQPTFAEFYQTLHSFLLNLIQPVTLIAHNGLQFDFPIL 128

Query: 107 NAELQRINKDPLD-PSRIIDTLSIARRK 133
             E+ R     L       D+L + R  
Sbjct: 129 KTEMARCGNPDLPATFFCCDSLKLFRLM 156


>gi|300798138|ref|NP_001178043.1| ERI1 exoribonuclease 2 [Rattus norvegicus]
          Length = 687

 Score = 72.9 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 72/226 (31%), Gaps = 29/226 (12%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE    +      +    F  ++ P      S    +L 
Sbjct: 38  IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFD 102
           GI    + +        S+F  + ++                     +   ++  +    
Sbjct: 98  GIKQVQVDEGVPLKICLSQFCKWIHKLQQQKKISFATGDSEPSTPEVKPCAFVTWSDWDL 157

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +  E +R     P+  +  ID  +  +  +      L+   +  GI  S R  H  L
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYNRKPKGLSGALQEVGIEFSGRE-HSGL 216

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207
            DS   + +  KM+  G  +      N+    K  K    N+ L +
Sbjct: 217 DDSRNTALLAWKMIRDGCLMKITRSLNKVLTKKNPKILARNLGLDQ 262


>gi|299472855|emb|CBN80424.1| EsV-1-126 [Ectocarpus siliculosus]
          Length = 206

 Score = 72.9 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 74/199 (37%), Gaps = 30/199 (15%)

Query: 7   MRKIVFDIETTGLDSKND-----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           M ++ FD+ETTGL  +             R++ I  V     +  ++ + V   P    +
Sbjct: 1   MPELFFDVETTGLPPRKANPETFEQYDSCRVVSIAWVLRDQKTVYSQRYSVT-DPGIADD 59

Query: 56  SPEALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           +  A  +HGI+     +   + S + S+F    N+ + + +AHN  FD   ++AEL R+ 
Sbjct: 60  NIGAEFVHGISRAVMDRYGNAVSVVLSDFMADVNKSD-KIVAHNLDFDRSVVSAELFRMG 118

Query: 115 ----KDPLDPSRIIDTLSIARRKHPSSRN-------DLNSLCKRYGITISH--RSKHGAL 161
                  L     + T+           +        L  L K       H   + H A+
Sbjct: 119 SADDARRLMSFNSLCTMKSTTNLVRIPNSYGSYKWPKLEELHKFL---FGHVFENAHHAM 175

Query: 162 LDSHLLSDVYIKMMVGGSQ 180
            D   +   Y  ++   + 
Sbjct: 176 CDVDAMVKCYFTLLEKHAS 194


>gi|26554402|ref|NP_758336.1| DNA polymerase III [Mycoplasma penetrans HF-2]
 gi|26454412|dbj|BAC44740.1| probable DNA polymerase III [Mycoplasma penetrans HF-2]
          Length = 357

 Score = 72.9 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 11/175 (6%)

Query: 1   MIRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M    K ++IVF DIE    + K  RI++ GA+++      ++    F  P   K +P  
Sbjct: 1   MFDFPKDKEIVFVDIEA---NDKPKRILQFGAIKIKKNGDIDKK-NWFCNPKC-KITPHI 55

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K+     + +    S   I  +   + N  N+  I++   FD  F+N   +RI K  L+
Sbjct: 56  YKIVSRNIKKIDKGMSHIRITEKIHKYLN--NSVLISY-GAFDYNFLNNMCKRIIKKKLN 112

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               ID     R+   +     LN L     + ++ +  H A  D+ +L  ++ +
Sbjct: 113 V-TYIDLQEEWRKISMTKEVWALNKLANFLNVEVNEKELHDAYYDAFVLYQIFCE 166


>gi|148975895|ref|ZP_01812684.1| exonuclease I [Vibrionales bacterium SWAT-3]
 gi|145964640|gb|EDK29893.1| exonuclease I [Vibrionales bacterium SWAT-3]
          Length = 474

 Score = 72.9 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 61/201 (30%), Gaps = 25/201 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PE 58
           M   N+     FD ET G+    DR  +   V    D++       ++  P       PE
Sbjct: 1   MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPADYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  +  IT +  +          ++      + N   + +N+ +FD         R   D
Sbjct: 61  AALITRITPQKAVSQGLPEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI-----IDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSK 157
           P   S        D L + R  H                    L  L    GI   H + 
Sbjct: 121 PYAWSWQNGNSRWDLLDVMRAVHALRPDGIVWPENEEGFPSFKLEHLSVANGIE--HENA 178

Query: 158 HGALLDSHLLSDVYIKMMVGG 178
           H A+ D     ++  K+    
Sbjct: 179 HDAMADVIATIELAKKLKAAQ 199


>gi|163753213|ref|ZP_02160337.1| hypothetical protein KAOT1_13672 [Kordia algicida OT-1]
 gi|161326945|gb|EDP98270.1| hypothetical protein KAOT1_13672 [Kordia algicida OT-1]
          Length = 183

 Score = 72.9 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 72/187 (38%), Gaps = 13/187 (6%)

Query: 1   MIRKNKMRKIVFDIETT-----GLDSKND-RIIEIGAVEL-LDYSKTNRTFQVFLCPNGR 53
           M   NK   +V D+E T     G   +N   IIEIG  EL +   K ++   + + P   
Sbjct: 1   MKTTNK--ILVVDLEATCWEQDGEYQRNHSEIIEIGICELDVPSGKISKQQGILVIPEHS 58

Query: 54  KNSPEALKLHGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           + S    +L  IT E +  D  SF       +D + + +A   A    +D   +  E ++
Sbjct: 59  EISRFCTELTSITPEMVAQDGVSFEDAIDILFDEY-DSSAYTWASYGAYDRNKVMEECRK 117

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              D     + I+     +R +   R   +    K+  I +  R  H  + D++  + + 
Sbjct: 118 KQVDFPFGDQHINVKEEFKRCNRMRRGIGMARALKQLRIPLEGR-HHRGVDDANNTAKIL 176

Query: 172 IKMMVGG 178
              +   
Sbjct: 177 HWCLNNQ 183


>gi|315634266|ref|ZP_07889553.1| exodeoxyribonuclease I [Aggregatibacter segnis ATCC 33393]
 gi|315476856|gb|EFU67601.1| exodeoxyribonuclease I [Aggregatibacter segnis ATCC 33393]
          Length = 475

 Score = 72.9 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 74/221 (33%), Gaps = 27/221 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PE 58
           M+ KN     ++D E+ G++   DR  + G +    D++       ++          PE
Sbjct: 1   MMAKNDFSFFIYDYESFGVNPATDRPAQFGGIRTDADFNIIGEPVVLYCKQTNDYLPAPE 60

Query: 59  ALKLHGITDEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           A+ + GIT +   +K  P          +F          +N ++D         R   D
Sbjct: 61  AVLVTGITPQECNEKGLPEPDFAARILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHP-----------SSRNDLNSLCKRYGITISHRSK 157
           P + S          +D +       P                L  L K  GI   H + 
Sbjct: 121 PYEYSWKNGNSRWDLLDLVRACYALRPNGIEWPLDDDGMPSFHLEKLTKANGIE--HTNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
           H A+ D +   ++    ++   Q        E+R  KE +K
Sbjct: 179 HDAMSDVYATIEM--AKLIKQKQPKLFQYFFENRGKKEIEK 217


>gi|307172626|gb|EFN63985.1| hypothetical protein EAG_09598 [Camponotus floridanus]
          Length = 292

 Score = 72.9 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 81/224 (36%), Gaps = 41/224 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I+FD+ETTG    N  II+I A         N+ F V++ P+          +  ++
Sbjct: 1   MTAIIFDLETTGFGP-NAEIIQIAAKYH------NQEFNVYIFPSN-SIPTIVSNITNLS 52

Query: 67  DEF------------LKDKPSFSSIFSEFWDFFN--EQNAEWIAHN-AKFDVGFINAELQ 111
            E               D  S       F  F      +   +AHN  +FD   I   + 
Sbjct: 53  IEDGQLILDSENEYRRLDTESPRMACELFISFLKNISHDIILVAHNGERFDAPLIVKTMN 112

Query: 112 RINK------------DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
            +              D L   +    L+  ++K       L++L   Y    S R  H 
Sbjct: 113 AVGLLKEFGSIVKGFTDSLSIFKDRKELAFRKKKGKGG-FSLSALANDYLEPDSTRGAHN 171

Query: 160 ALLDSHLLSDVYIKMMVGGSQI-----NFGFKTNEDRFFKEEKK 198
           A++D  +L ++  K  +  +++      F    N DR  KE+++
Sbjct: 172 AVVDVQMLDNLLKKFAIKETELISCVVPFSSIVNADRIRKEKEE 215


>gi|23009273|ref|ZP_00050383.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 237

 Score = 72.9 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 5/131 (3%)

Query: 88  NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCK 146
                  +AHNA FD+G + A L     +P+       TL IARR  P    + L  +  
Sbjct: 17  GLGGRLLLAHNAGFDMGVLAASLTAWG-EPVPEMMGHCTLQIARRIFPDPAGHGLAKVAA 75

Query: 147 RYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
           R GI   H   H A  D++  +++ +  +      +             +    P     
Sbjct: 76  RLGIRFEH---HDAGEDAYACAEIALAALRETGATDIADLARGLGLTPIQAAATPRRDFT 132

Query: 207 KRDKPLFTRIT 217
           +       R +
Sbjct: 133 RSTSARAIRAS 143


>gi|167574166|ref|ZP_02367040.1| Transposase and inactivated derivatives-like protein [Burkholderia
           oklahomensis C6786]
          Length = 203

 Score = 72.9 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 11/132 (8%)

Query: 48  LCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           + P         + +HGI +  +KD P+F  I++   D   +Q    +  +  FD   + 
Sbjct: 2   VNPQDY-FDWINIDIHGIDETTVKDAPTFQQIYAAMLDRLRDQ---VVVSHTSFDRTALF 57

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDS 164
             + + N   +   + +D+  + RR           L ++C   GI+    + H A+ D+
Sbjct: 58  QAIAKHNLTAVS-CQWLDSARVVRRAWAQWSRAGYGLTNVCNTLGISF---TAHDAVEDA 113

Query: 165 HLLSDVYIKMMV 176
               +V ++ + 
Sbjct: 114 RAAGEVLLQAIR 125


>gi|332667991|ref|YP_004450779.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332336805|gb|AEE53906.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 180

 Score = 72.9 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 10/177 (5%)

Query: 7   MRKIVFDIETT---GLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALK 61
           M  I+FD+E T   G        +IEIGAV +  Y +    F   + P      S    +
Sbjct: 1   MNFIIFDLEATCWEGRPPSKVQEVIEIGAVLMNGYGEVEAEFSRMVRPILNPRLSAYCQE 60

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           L  I    +     F  +   F D+    +++    +     D   +  + Q  + +   
Sbjct: 61  LTNIKQTEVDRASIFPVVVESFQDWGLMLDEDYILCSW-GGMDKKLLLQDCQLHDIEDEW 119

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               I+            R   L +  +  G   +   +H AL D+  L+ +++K +
Sbjct: 120 VDAHINIKHQYMELKRMRRPKGLRASVEAEGFDFTG-PQHRALADAQNLAKIFLKYL 175


>gi|297283615|ref|XP_001084714.2| PREDICTED: ERI1 exoribonuclease 2-like [Macaca mulatta]
          Length = 690

 Score = 72.9 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 65/197 (32%), Gaps = 29/197 (14%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE    +      +    FQ ++ P      S   ++L 
Sbjct: 38  IVIDFESTCWNDGKRHHSQEIIEFPAVLLNTSTGQIESEFQAYVQPQEHPILSEFCMELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFD 102
           GI    + +        S+F  + ++                     +   ++  +    
Sbjct: 98  GIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSTSEVKLCAFVTWSDWDL 157

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +  E +R     P+  +  ID  +  +  +      L+   +  GI  S R  H  L
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGRE-HSGL 216

Query: 162 LDSHLLSDVYIKMMVGG 178
            DS   + +  KM+  G
Sbjct: 217 DDSRNTALLAWKMIRDG 233


>gi|310830415|ref|YP_003965516.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2]
 gi|309249882|gb|ADO59448.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2]
          Length = 193

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 67/188 (35%), Gaps = 23/188 (12%)

Query: 7   MRKIVFDIETTGLD---SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKL 62
           M  I+ D+E T  +   SK + IIEIGAV+L D+      FQ F+ P      S   ++L
Sbjct: 1   MNYIIVDLEATCWENDRSKRNEIIEIGAVKLDDHLNVVSEFQAFVKPKLYPQLSEFCMQL 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDP 120
             I    +    +F ++  +F  +    N    +    +D   + ++     +    L  
Sbjct: 61  TSIEQHDVDHAATFETVLEDFQSWMGS-NYWLCSW-GYYDKKQLKSDCDLHKQPTSWLRN 118

Query: 121 SRIIDTLSIARRKHPSSR--------------NDLNSLCKRYGITISHRSKHGALLDSHL 166
              I     A  K                     +    K   I +   + H  + D+  
Sbjct: 119 HISIKHQHGAILKEKLENAGASKSEVKRVEHGVGMEKALKILKIPLEG-THHRGIDDARN 177

Query: 167 LSDVYIKM 174
           ++ +++ +
Sbjct: 178 IAKIFVAI 185


>gi|290475866|ref|YP_003468758.1| exonuclease I [Xenorhabdus bovienii SS-2004]
 gi|289175191|emb|CBJ81994.1| exonuclease I, 3'--> 5'-specific; deoxyribophosphodiesterase
           [Xenorhabdus bovienii SS-2004]
          Length = 475

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPE 58
           M         V D ET G     DR  +   +    D++       V+  P +     PE
Sbjct: 1   MSNDKTPTFYVHDYETFGKHPALDRPAQFAGIRTDSDFNIIEDPLVVYCLPADDYLPDPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A+ + GIT +  LK   + +    +  + F++ N   I +N  +FD         R   D
Sbjct: 61  AVMITGITPQLALKKGVNEAEFARQIHEAFSKPNTCIIGYNNIRFDDEVSRNIFYRNFYD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L +L K  G+   H   
Sbjct: 121 PYAYSWQKGNSRWDLLDVLRACYALRPEGIIWPENEDGLPSFKLENLTKANGVE--HTQA 178

Query: 158 HGALLDSHLL 167
           H A+ D +  
Sbjct: 179 HDAMSDVYAT 188


>gi|291521153|emb|CBK79446.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Coprococcus catus GD/7]
          Length = 320

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 16/181 (8%)

Query: 7   MRKIVFDIE---TTGLDSKNDR-----IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  +V D E           +R     IIEIGAV+L +  K    F   + P   K    
Sbjct: 1   MNYVVVDFEWNQACYGKGSENRKIPFEIIEIGAVKLDENLKEIDRFSRTIRPKVYKKLHY 60

Query: 59  ALK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             + L GIT E L     FS +  +F  +   ++  +       D+  +   ++      
Sbjct: 61  ITRDLTGITQEELCASDPFSYVLVDFMLWCG-KDYIFCTW-GNMDLVELQRNMKYYGLLD 118

Query: 118 L--DPSRIIDTLSIARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L   P +  +     R    H +S   L S    + +       H A+ D+   +DV+ +
Sbjct: 119 LLKGPVKYYNVQKFFRLLCAHDASAVSLESAVDYFQLP-KEAGFHRAVNDAAYTADVFRR 177

Query: 174 M 174
           +
Sbjct: 178 I 178


>gi|30264951|ref|NP_847328.1| sporulation inhibitor KapD [Bacillus anthracis str. Ames]
 gi|47530447|ref|YP_021796.1| sporulation inhibitor KapD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187770|ref|YP_031023.1| sporulation inhibitor KapD [Bacillus anthracis str. Sterne]
 gi|65316901|ref|ZP_00389860.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bacillus anthracis str. A2012]
 gi|165870872|ref|ZP_02215524.1| sporulation inhibitor KapD [Bacillus anthracis str. A0488]
 gi|167634919|ref|ZP_02393237.1| sporulation inhibitor KapD [Bacillus anthracis str. A0442]
 gi|167639964|ref|ZP_02398232.1| sporulation inhibitor KapD [Bacillus anthracis str. A0193]
 gi|170685855|ref|ZP_02877078.1| sporulation inhibitor KapD [Bacillus anthracis str. A0465]
 gi|170706941|ref|ZP_02897398.1| sporulation inhibitor KapD [Bacillus anthracis str. A0389]
 gi|177652301|ref|ZP_02934804.1| sporulation inhibitor KapD [Bacillus anthracis str. A0174]
 gi|190567138|ref|ZP_03020053.1| sporulation inhibitor KapD [Bacillus anthracis Tsiankovskii-I]
 gi|196033113|ref|ZP_03100526.1| sporulation inhibitor KapD [Bacillus cereus W]
 gi|196040448|ref|ZP_03107748.1| sporulation inhibitor KapD [Bacillus cereus NVH0597-99]
 gi|196043866|ref|ZP_03111103.1| sporulation inhibitor KapD [Bacillus cereus 03BB108]
 gi|218906109|ref|YP_002453943.1| sporulation inhibitor KapD [Bacillus cereus AH820]
 gi|225866886|ref|YP_002752264.1| sporulation inhibitor KapD [Bacillus cereus 03BB102]
 gi|227817679|ref|YP_002817688.1| sporulation inhibitor KapD [Bacillus anthracis str. CDC 684]
 gi|228917539|ref|ZP_04081084.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929937|ref|ZP_04092951.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228936199|ref|ZP_04098999.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948633|ref|ZP_04110911.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229124453|ref|ZP_04253640.1| Sporulation inhibitor KapD [Bacillus cereus 95/8201]
 gi|229601886|ref|YP_002869154.1| sporulation inhibitor KapD [Bacillus anthracis str. A0248]
 gi|254687243|ref|ZP_05151100.1| sporulation inhibitor KapD [Bacillus anthracis str. CNEVA-9066]
 gi|254725256|ref|ZP_05187039.1| sporulation inhibitor KapD [Bacillus anthracis str. A1055]
 gi|254735420|ref|ZP_05193128.1| sporulation inhibitor KapD [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740687|ref|ZP_05198378.1| sporulation inhibitor KapD [Bacillus anthracis str. Kruger B]
 gi|254753051|ref|ZP_05205087.1| sporulation inhibitor KapD [Bacillus anthracis str. Vollum]
 gi|254761393|ref|ZP_05213414.1| sporulation inhibitor KapD [Bacillus anthracis str. Australia 94]
 gi|301056400|ref|YP_003794611.1| sporulation inhibitor KapD [Bacillus anthracis CI]
 gi|30259626|gb|AAP28814.1| sporulation inhibitor KapD [Bacillus anthracis str. Ames]
 gi|47505595|gb|AAT34271.1| sporulation inhibitor KapD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181697|gb|AAT57073.1| sporulation inhibitor KapD [Bacillus anthracis str. Sterne]
 gi|164713381|gb|EDR18906.1| sporulation inhibitor KapD [Bacillus anthracis str. A0488]
 gi|167512045|gb|EDR87423.1| sporulation inhibitor KapD [Bacillus anthracis str. A0193]
 gi|167529669|gb|EDR92418.1| sporulation inhibitor KapD [Bacillus anthracis str. A0442]
 gi|170128044|gb|EDS96914.1| sporulation inhibitor KapD [Bacillus anthracis str. A0389]
 gi|170670319|gb|EDT21059.1| sporulation inhibitor KapD [Bacillus anthracis str. A0465]
 gi|172082307|gb|EDT67373.1| sporulation inhibitor KapD [Bacillus anthracis str. A0174]
 gi|190561642|gb|EDV15612.1| sporulation inhibitor KapD [Bacillus anthracis Tsiankovskii-I]
 gi|195994542|gb|EDX58497.1| sporulation inhibitor KapD [Bacillus cereus W]
 gi|196025202|gb|EDX63872.1| sporulation inhibitor KapD [Bacillus cereus 03BB108]
 gi|196028580|gb|EDX67187.1| sporulation inhibitor KapD [Bacillus cereus NVH0597-99]
 gi|218535783|gb|ACK88181.1| sporulation inhibitor KapD [Bacillus cereus AH820]
 gi|225790491|gb|ACO30708.1| sporulation inhibitor KapD [Bacillus cereus 03BB102]
 gi|227005614|gb|ACP15357.1| sporulation inhibitor KapD [Bacillus anthracis str. CDC 684]
 gi|228659001|gb|EEL14654.1| Sporulation inhibitor KapD [Bacillus cereus 95/8201]
 gi|228810940|gb|EEM57283.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823446|gb|EEM69278.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228829734|gb|EEM75357.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842106|gb|EEM87208.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229266294|gb|ACQ47931.1| sporulation inhibitor KapD [Bacillus anthracis str. A0248]
 gi|300378569|gb|ADK07473.1| sporulation inhibitor KapD [Bacillus cereus biovar anthracis str.
           CI]
          Length = 207

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 20/189 (10%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            ++ R +  D E T         G   +   IIE+G V ++   K   T+   + P    
Sbjct: 1   MDEQRFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSAHVRPKTFP 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +    K  GI  E +    SFS +  +  ++        +      D+  +    ++ 
Sbjct: 57  SLTDRCKKFLGIKQEVVDKGISFSELVEKLAEYEKRCKPTIVTW-GNMDMKVLKHNCEKA 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             D     +  D     ++     RN   L    + YG  +     H AL D+    +++
Sbjct: 116 GVDFPFLGQCRDLSLEYKKFF-GERNQTGLWKAIEAYG-KVGTGKHHCALDDAMTTYNIF 173

Query: 172 IKMMVGGSQ 180
            K++    +
Sbjct: 174 -KLVEKDKE 181


>gi|330447523|ref|ZP_08311171.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491714|dbj|GAA05668.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 185

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 10/178 (5%)

Query: 4   KNKMRKIVFDIETT----GLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE 58
            N  R + FD+E      G  S+   IIEIG  EL L+  K  R  Q ++ P   + SP 
Sbjct: 1   MNFDRIVCFDLEMCCWNDGRTSRTGEIIEIGVAELDLNTGKIVRRAQHYVRPAKDEISPF 60

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKD 116
             +L GI  E + K+    S I       F  ++  + A     D   +    L +  K 
Sbjct: 61  CTELTGIKPEIVEKNGKPLSVILKSIEQKFGGRHKIYAA--WGHDDRILKKECLAKDLKV 118

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           P      + TL   +R   + R    +  +  G+    R  H   +D++ L+ +   M
Sbjct: 119 PFREYLNLATLFKLQRHVTNKRLGQRAAMEIAGVEWEGRQ-HSGYVDAYNLARLAATM 175


>gi|323518467|gb|ADX92848.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 226

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 88/243 (36%), Gaps = 46/243 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVEL--LDYSKT---NRTF-QVFLCPNGRKNSPEAL 60
           M+ I+ D ET   +  N   IEI        +       +  F + + CP       EA+
Sbjct: 1   MKAIILDTET---NKLNGYPIEIAYAPFSLENGQLLVHKDEVFNRFYSCPE--PIDLEAM 55

Query: 61  KLHGITDEFLKDKPSFSSI-FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +H I +  ++ +PS  S    E  +F        + HN  +D+  +N         P  
Sbjct: 56  AVHNIIEADIEGQPSCESFRLPEGVEFI-------VGHNIDYDIKALNKC------GPAI 102

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLC-----KRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++ I TL++AR   P  + + L  L       R       R  H A  D +    + I 
Sbjct: 103 KAKAICTLALARDVWPDLTSHKLAVLYYFVMSNREEARKHLRHAHSARADVYFTGIILIA 162

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNI---------SLLKRDKPLFT-RITKEELDE 223
           ++        G K     F   E   +P I          L +  +P  +  + KE+LD 
Sbjct: 163 LIE-----RLGIKDLNSLFLMSEAVRLPKIMTWGKHKGTPLKELPRPYISWLLNKEDLDP 217

Query: 224 HDK 226
           H +
Sbjct: 218 HLR 220


>gi|228942073|ref|ZP_04104614.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228975003|ref|ZP_04135563.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981594|ref|ZP_04141890.1| Sporulation inhibitor KapD [Bacillus thuringiensis Bt407]
 gi|228778079|gb|EEM26350.1| Sporulation inhibitor KapD [Bacillus thuringiensis Bt407]
 gi|228784708|gb|EEM32727.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817589|gb|EEM63673.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326942675|gb|AEA18571.1| sporulation inhibitor KapD [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 207

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 20/189 (10%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            ++ R +  D E T         G   +   IIE+G V  +   K   T+   + P    
Sbjct: 1   MDEQRFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLV-SVAGRKVEDTYSSHVRPKTFP 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +    K  GI  E +    SF  +  +  ++  +     +      D+  +    +  
Sbjct: 57  SLTDRCKKFLGIKQEVVDKGISFPELVKKLAEYETKCKPTIVTW-GNMDMKVLKHNCEMA 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                   +  D     ++     RN   L    + YG  +     H AL D+    +++
Sbjct: 116 GIAFPFFGQCRDLSLEYKKFF-GERNQTGLWKAIEAYG-KVGTGKHHCALDDAMTTYNIF 173

Query: 172 IKMMVGGSQ 180
            K++    +
Sbjct: 174 -KLVEKDKE 181


>gi|90022039|ref|YP_527866.1| exonuclease I [Saccharophagus degradans 2-40]
 gi|89951639|gb|ABD81654.1| Exodeoxyribonuclease I subunit C [Saccharophagus degradans 2-40]
          Length = 485

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 65/208 (31%), Gaps = 26/208 (12%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRK-NSPEALKLHGITD-EF 69
           D ET G +   DR  +   V   +D +       ++  P      +PEA  + G+T  E 
Sbjct: 9   DYETWGANPAVDRPSQFAGVRTDMDLNIIGEPLVIYCKPPEDIWPNPEACLVTGLTPQET 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L    +      +      +     + +N+ +FD       L R   DP +         
Sbjct: 69  LAKGVTEREFIKQIHRELAKPGTCGVGYNSIRFDDEVTRYTLYRNYFDPYEREWRNGNSR 128

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID + +     P               L +L K  GI   H S H A  D      +
Sbjct: 129 WDIIDMVRLCYALRPEGIEWPVVDGKPSFRLENLTKVNGIV--HASAHDAYSDVEATIKL 186

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKK 198
               +V   Q         +R  +E  K
Sbjct: 187 --ARLVREKQPALYEHVVNNRGKREATK 212


>gi|220934199|ref|YP_002513098.1| exonuclease [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995509|gb|ACL72111.1| exonuclease [Thioalkalivibrio sp. HL-EbGR7]
          Length = 236

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 7/163 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKL 62
            ++ R +V D+ETTGLD     ++ +G V +  +          +      +   + L +
Sbjct: 37  LDEARFVVIDVETTGLDLSRSELLSVGLVPVGPHGIELGGLDEIVLRREVTRIDKDNLVV 96

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPS 121
           HGI+              S   +   +     +A +A FD   +   L++ +     +P 
Sbjct: 97  HGISPTESAAGVDIHEALSSVLERIGK--TWLVAFHADFDRIILGRTLRKQLGVKLRNPF 154

Query: 122 RIIDTLSIA-RRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  L  A   +  +    L+     + I    R  H A  D
Sbjct: 155 LDLAMLLPALYSEGTAGLKGLDDWLGHFAIPCPVR--HRASAD 195


>gi|73536580|ref|XP_847714.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|321438628|emb|CBZ12387.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 405

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 79/208 (37%), Gaps = 16/208 (7%)

Query: 9   KIVFDIETTGLDSKN---DRIIEI-GAVELLDYSKTNR--TFQVFLCP-NGRKNSPEALK 61
            IV D+E T   +       +IEI G +  +   + +R  +F  F+ P    + +P   +
Sbjct: 76  IIVVDVEATCEQNNRNYPHEVIEIPGVLINVRTGQVDRARSFHTFVKPWRNPRLTPFCTQ 135

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDF----FNEQNAEWIAHNAKFDV-GFINAE--LQRIN 114
           L GIT E +   PS +     F  +             A +  +D   FI+    L+   
Sbjct: 136 LTGITQEVVDAAPSITEAIQLFEKWYWETIPRGAKTIFAADGPWDFKNFIHEHHILRDHV 195

Query: 115 KDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             P      +D   + A R +      L+++ ++  +    R  H    D++ ++ + + 
Sbjct: 196 GFPSIFYEYLDIRTTFAHRLNHGVPIKLDAMLRKMNLRFDGR-PHNGFDDAYNIARLAVA 254

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVP 201
           MM  G  ++F      D  +      VP
Sbjct: 255 MMKAGCVLDFVIAIPLDDAYHYHLDGVP 282


>gi|290979061|ref|XP_002672253.1| predicted protein [Naegleria gruberi]
 gi|284085828|gb|EFC39509.1| predicted protein [Naegleria gruberi]
          Length = 1200

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 11/141 (7%)

Query: 6   KMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             + I+FD ETTG  + +D  +I E   + +     T  +    + P  +  S  + K+ 
Sbjct: 806 DDKYILFDFETTGFWTNDDPPKITEYCFLNMA----TGESIYGLVNPT-KSISYHSTKIT 860

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN--EQNAEWIAHNAKF-DVGFINAELQRINKDPLDP 120
           GI   +++DKP          DF +  +     IAHN +  D      E     +   + 
Sbjct: 861 GINLNYVRDKPIIEKELDFIIDFISNTKGKTFLIAHNGEILDFKVFKKEFYPKRESKFEN 920

Query: 121 SRIIDTLSIARRKHPSSRNDL 141
              +D+L + +  H    + L
Sbjct: 921 IVFVDSLKLMKS-HKDLHHKL 940


>gi|21231005|ref|NP_636922.1| exonuclease I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768990|ref|YP_243752.1| exonuclease I [Xanthomonas campestris pv. campestris str. 8004]
 gi|21112628|gb|AAM40846.1| exodeoxyribonuclease I [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574322|gb|AAY49732.1| exodeoxyribonuclease I [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 481

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 25/182 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV               F+ P +    SP A  + GIT
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 67  DEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI- 123
            +  L++  + +  F+   +         + +N+ +FD  F+   L R   DP +     
Sbjct: 65  PQHALREGVNEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREWRG 124

Query: 124 -------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                  +D L +     P                L  L       +     H AL D +
Sbjct: 125 GNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADA--NAVREGDAHEALSDVY 182

Query: 166 LL 167
             
Sbjct: 183 AT 184


>gi|227505999|ref|ZP_03936048.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC
           6940]
 gi|227197281|gb|EEI77329.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC
           6940]
          Length = 526

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 32/175 (18%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +   ++TTG+     R++ I A+      +  + F   + P+     P    LHG+T E
Sbjct: 87  FVALTVQTTGIHPSTARLVAIDALTFNAQGEVGQEFHAVVNPD---IDPGPRHLHGLTPE 143

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI---------------------- 106
            +    +FS +        + +    I H+  F  GFI                      
Sbjct: 144 EVARGQAFSRLLKPLDRLIDGR--TLIVHDTPFTWGFIVSEARRAMMAAARQNRSRNRNR 201

Query: 107 ---NAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSK 157
                  Q++   P  P  I+DTL+ ARR+     +  L ++ KR G+ +   + 
Sbjct: 202 NKGRRRRQKVGHVP-TPVTIVDTLATARRQGVWENDIRLAAVAKRSGLDVPPPTA 255


>gi|323455145|gb|EGB11014.1| hypothetical protein AURANDRAFT_6072 [Aureococcus anophagefferens]
          Length = 194

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 69/191 (36%), Gaps = 23/191 (12%)

Query: 10  IVFDIETTGL--------DSKNDRIIEIGAVELLDYSKTNR------TFQVFLCPNGRK- 54
           +V D E T +           +  IIE  AV +      ++      TFQ F+ P  R  
Sbjct: 5   VVVDFECTCVADTTYQKKTPFSHEIIEFPAVVVDLTLGESQDVFARPTFQRFVRPTERPR 64

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-----VGFINAE 109
            S    KL GI+ E +      + + + F  +  EQN     +    D       F+  E
Sbjct: 65  LSDFCTKLTGISQETVDAAEPLADVLAAFRAWLEEQNLAPGTYAMAADGPWDLRKFLLGE 124

Query: 110 LQRINKDPLDPSR-IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLL 167
             R +       R  +D     R+ +   R  +L +     G+    R  H  L D+  +
Sbjct: 125 CARKHLAADPRWRTWVDVSLHLRKHYDVKRPGNLENKLALLGLAFEGR-PHSGLDDARNI 183

Query: 168 SDVYIKMMVGG 178
           + + +++   G
Sbjct: 184 ARLALRLRRDG 194


>gi|269966310|ref|ZP_06180397.1| exodeoxyribonuclease I [Vibrio alginolyticus 40B]
 gi|269829049|gb|EEZ83296.1| exodeoxyribonuclease I [Vibrio alginolyticus 40B]
          Length = 473

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M + N+     FD ET G +   DR  +   V    +++       ++  P       PE
Sbjct: 1   MHQDNQPTFFFFDYETWGTNPAKDRSSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +  +++  S     ++      + N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKTVQEGLSEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVVATIEMAKKVKAAQPKL 202


>gi|59712089|ref|YP_204865.1| exonuclease I [Vibrio fischeri ES114]
 gi|59480190|gb|AAW85977.1| exonuclease I [Vibrio fischeri ES114]
          Length = 474

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 25/193 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSPE 58
           M + N      FD ET G     DR  +   V    D++       ++  P      SPE
Sbjct: 1   MPQNNAPSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPVDYLPSPE 60

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQ 111
           A  + GIT +   +K  S     ++     ++ N   + +N  +FD             +
Sbjct: 61  ACLITGITPQTAVNKGLSEPEFIAKIHHELSQPNTCSLGYNNIRFDDEVSRYTLYRNFFE 120

Query: 112 RINKDPLDPSRIIDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSK 157
                  + +   D L + R  +                    L +L    GI   H + 
Sbjct: 121 PYGWSWQNGNSRWDLLDVMRAVYALRPEGINWPKDEEGRPSFKLENLSVANGIE--HANA 178

Query: 158 HGALLDSHLLSDV 170
           H A+ D     ++
Sbjct: 179 HDAMADVIATIEL 191


>gi|241763393|ref|ZP_04761448.1| Exodeoxyribonuclease I [Acidovorax delafieldii 2AN]
 gi|241367435|gb|EER61746.1| Exodeoxyribonuclease I [Acidovorax delafieldii 2AN]
          Length = 481

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 77/223 (34%), Gaps = 31/223 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G +++ DR  +  A+    +  +      ++  P N     P++  + GIT +  
Sbjct: 10  DYETFGANTRRDRPAQFAAIRTDAELREVGEPLMLYCQPANDYLPDPQSCLITGITPQLC 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           L+         +     F +     + +N  +FD       F    +    ++  +    
Sbjct: 70  LEKGVPEHEFANRIEAEFAQPGTIGVGYNTIRFDDEITRFMFWRNLIDPYAREWQNQCGR 129

Query: 124 IDTL--------------SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            D L                 R++  S    L  L K  G  ++H + H AL D      
Sbjct: 130 WDLLDVVRMTYALRPDGIHWPRKEDGSPSFKLEHLSKANG--LAHEAAHDALSDVRAT-I 186

Query: 170 VYIKMMVGGSQINFGFKTN---EDRFFKEEKKTVPNISLLKRD 209
              +++   +   F F  +   +DR   E +  +P  +L  R 
Sbjct: 187 ALARLIRQHNPRLFDFALSLHKKDRVAAELR--LPATALTARP 227


>gi|237798642|ref|ZP_04587103.1| exonuclease I [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021495|gb|EGI01552.1| exonuclease I [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 476

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 68/226 (30%), Gaps = 26/226 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ +NDR +++  +    + ++      ++  P       P A  + GIT   L
Sbjct: 9   DYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPGDDILPHPAACVITGITPATL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +K        +      +        +N  +FD         R   DP           
Sbjct: 69  AEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    GI   H   H AL D      +
Sbjct: 129 WDLIDVVRAAYALRPDGIVWPEQDGRVTLKLERLTAANGID--HGQAHDALSDVRAT--I 184

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            +  ++   Q          R  ++ +  V  +  L      F+  
Sbjct: 185 ALARLIREKQPKLYDYLFALRTKQKVQDQVRLLQPLVHISGRFSAA 230


>gi|188992104|ref|YP_001904114.1| exonuclease I [Xanthomonas campestris pv. campestris str. B100]
 gi|167733864|emb|CAP52070.1| Exodeoxyribonuclease I [Xanthomonas campestris pv. campestris]
          Length = 481

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 25/182 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV               F+ P +    SP A  + GIT
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 67  DEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI- 123
            +  L++  + +  F+   +         + +N+ +FD  F+   L R   DP +     
Sbjct: 65  PQHALREGVNEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREWRG 124

Query: 124 -------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                  +D L +     P                L  L       +     H AL D +
Sbjct: 125 GNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADA--NAVREGDAHEALSDVY 182

Query: 166 LL 167
             
Sbjct: 183 AT 184


>gi|288549827|ref|ZP_05968320.2| exodeoxyribonuclease I [Enterobacter cancerogenus ATCC 35316]
 gi|288317556|gb|EFC56494.1| exodeoxyribonuclease I [Enterobacter cancerogenus ATCC 35316]
          Length = 478

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 58/178 (32%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G     DR  +  A+    D++        +  P       P A+ + GIT +  
Sbjct: 18  DYETFGTHPALDRPAQFAAIRTDEDFNIIGEPEVFYCKPADDYLPQPGAVMVTGITPQEA 77

Query: 71  KDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-----DPSRI 123
           +DK  + +         F   N   + +N  +FD         R   DP      + +  
Sbjct: 78  RDKGVNEAEFARRIHALFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSWQNRNSR 137

Query: 124 IDTLSIARRKH---PSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            D L I R  H   P                L  L +  GI   H + H A+ D +  
Sbjct: 138 WDLLDIMRACHALRPEGITWPENEEGLTSFRLEHLTRANGIE--HSNAHDAMADVYAT 193


>gi|149637346|ref|XP_001510677.1| PREDICTED: similar to 3-5 exonuclease TREX2 [Ornithorhynchus
           anatinus]
          Length = 240

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 75/196 (38%), Gaps = 33/196 (16%)

Query: 9   KIVFDIETTGLDSKNDRIIEIG--AVE--------LLDYS-----KTNRTFQVFLCPNGR 53
            +  D+E TGL   + +I EI   AV           D       +      + + P  +
Sbjct: 10  FVFLDLEATGLPDASPQIAEISLFAVHRFSLEHPAWDDSGVPLLPRVLDKLTLCMNPE-Q 68

Query: 54  KNSPEALKLHGITDEFLKD--KPSFS-SIFSEFWDFFNEQNAE--WIAHN-AKFDVGFIN 107
             +P+A K+ G+ +  L D  K  F  ++     +F + Q +    +AHN   +D   + 
Sbjct: 69  PFTPKAAKITGLNNRSLTDNRKACFDGTVVKALREFLSRQASPICLVAHNGFAYDFPLLR 128

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHP----------SSRNDLNSLCKRYGITISHRSK 157
            EL R++ +  + +  +DTL   +                   L  L ++Y      ++ 
Sbjct: 129 TELGRLDANLPENTYCLDTLPALKGLDKAHDHGTRSNHGKSYRLGDLYRQY-FGDDPKAA 187

Query: 158 HGALLDSHLLSDVYIK 173
           H A  D + L  V++ 
Sbjct: 188 HSAEGDVYTLVMVFLH 203


>gi|330504554|ref|YP_004381423.1| exonuclease I [Pseudomonas mendocina NK-01]
 gi|328918840|gb|AEB59671.1| exonuclease I [Pseudomonas mendocina NK-01]
          Length = 481

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 24/177 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ + DR +++  +   +  ++      ++  P+      P A  + GI  + L
Sbjct: 9   DYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAACLVTGIDPQRL 68

Query: 71  KD-KPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           +          +      +        +N+ +FD       L R   DP           
Sbjct: 69  QQLGLDEGEFMTRVHAALSTPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              ID +  A    P               L  L +  GI   H   H AL D    
Sbjct: 129 WDLIDLVRTAYALRPEGIEWPEEDGRVSLKLERLTQANGID--HGQAHDALSDVRAT 183


>gi|330804144|ref|XP_003290058.1| hypothetical protein DICPUDRAFT_80810 [Dictyostelium purpureum]
 gi|325079812|gb|EGC33394.1| hypothetical protein DICPUDRAFT_80810 [Dictyostelium purpureum]
          Length = 526

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 29/175 (16%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ETTGL S N  IIE+     L+       F     P     +PE+ K++ +T   L
Sbjct: 246 ILDSETTGLTS-NAEIIELSC-ACLNG----EAFYRKSNPTI-SITPESTKINNLTSHDL 298

Query: 71  KDKPSFSSIFSEFWDFFNEQNAE------WIAHNAKFDVGFINAELQR-------INKDP 117
                +  +  EF++F  +Q+++       IAHN K+D G I+  L +            
Sbjct: 299 AGHQYWEKVEEEFFNFIVQQSSDDDAPIYIIAHNEKYDRGRISFHLAKSTKALESSFHKT 358

Query: 118 LDPSRIIDTLSIA---RRKHP------SSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   +  D+++I    +   P           L++L   + I     ++H +  D
Sbjct: 359 ISRIKFFDSINIFKSIKLVLPVVSDKKKESYSLDNLATFFKINTDGINRHSSSGD 413


>gi|27366077|ref|NP_761605.1| exonuclease I [Vibrio vulnificus CMCP6]
 gi|27362277|gb|AAO11132.1| Exodeoxyribonuclease I [Vibrio vulnificus CMCP6]
          Length = 473

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 65/204 (31%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M + N+     FD ET G     DR  +  +V    +++       ++  P       PE
Sbjct: 1   MQQDNQPTFFFFDYETWGTSPAKDRPSQFASVRTDENFNIIGEPLVIYCRPPADYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +   K+        ++     +  N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKAQKEGLPEPEFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L    GI   H + 
Sbjct: 121 PYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIEMAKKVKAAQPKL 202


>gi|299769724|ref|YP_003731750.1| DNA polymerase III, epsilon subunit [Acinetobacter sp. DR1]
 gi|298699812|gb|ADI90377.1| DNA polymerase III, epsilon subunit [Acinetobacter sp. DR1]
          Length = 226

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 89/243 (36%), Gaps = 46/243 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQ----VFLCPNGRKNSPEAL 60
           M+ I+ D ET   +  N   IEI   ++ + +     +  +     + CP       EA+
Sbjct: 1   MKAIILDTET---NKLNGYPIEIAYASIGIENGQLLVQKDEVFNRFYSCPE--PIDLEAM 55

Query: 61  KLHGITDEFLKDKPSFSSI-FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +H I +  ++ +PS  +    E  +F        + HN  +D+  +N         P  
Sbjct: 56  AVHNIIEADIEGQPSCETFRLPEGVEFI-------VGHNIDYDIKALNKC------GPAI 102

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH------RSKHGALLDSHLLSDVYIK 173
            ++ I TL++AR   P   +   ++   + ++         R  H A  D +    + I 
Sbjct: 103 KAKTICTLALARDVWPDLPSHKLAVLYYFVMSNREEARKHLRHAHSARADIYFTGIILIA 162

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNI---------SLLKRDKPLFT-RITKEELDE 223
           ++        G K     F   E   +P I          L     P  T  + KE+LD 
Sbjct: 163 LIE-----RLGIKDLNSLFLMSEAVRLPKIMSWGKHKGTPLKDLPHPYITWLLNKEDLDP 217

Query: 224 HDK 226
           H +
Sbjct: 218 HLR 220


>gi|37679656|ref|NP_934265.1| exonuclease I [Vibrio vulnificus YJ016]
 gi|37198401|dbj|BAC94236.1| exonuclease I [Vibrio vulnificus YJ016]
          Length = 473

 Score = 72.2 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 64/204 (31%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M + N+     FD ET G     DR  +   V    +++       ++  P       PE
Sbjct: 1   MQQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +   K+        ++     +  N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKAQKEGLPEPEFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L    GI   H + 
Sbjct: 121 PYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIEMAKKVKAAQPKL 202


>gi|293389967|ref|ZP_06634301.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290950501|gb|EFE00620.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 475

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 76/223 (34%), Gaps = 31/223 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PE 58
           M+ KN     ++D E+ G++   DR  + G +    D++       ++          PE
Sbjct: 1   MMAKNDFSFFIYDYESFGVNPAKDRPAQFGGIRTDADFNIIGEPIVLYCKQTNDYLPAPE 60

Query: 59  ALKLHGITDEFLKDK----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           A+ + GIT +   +K    P F        +F          +N ++D         R  
Sbjct: 61  AVLVTGITPQECNEKGLSEPEF--AAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNF 118

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP + S          +D +       P                L  L +  GI  +H 
Sbjct: 119 IDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGI--AHD 176

Query: 156 SKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
           + H A+ D +   ++    ++   Q        E+R  KE +K
Sbjct: 177 NAHDAMSDVYATIEM--AKLIKQKQPKLFQYFFENRGKKEVEK 217


>gi|308174838|ref|YP_003921543.1| exoribonuclease (3'-5') [Bacillus amyloliquefaciens DSM 7]
 gi|307607702|emb|CBI44073.1| putative exoribonuclease (3'-5') [Bacillus amyloliquefaciens DSM 7]
          Length = 232

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 67/187 (35%), Gaps = 14/187 (7%)

Query: 3   RKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNG-RKN 55
           + ++   ++ D E T  D K         IIE G V+ +D  +   TF  ++ P   RK 
Sbjct: 27  KVDQRSLLIIDFEFTMPDGKYSPQNFFPEIIEAGIVKTVDD-EVAETFSSYIKPKKFRKL 85

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           +        IT E +    +F+    +  +   ++N   +      D+  +       N 
Sbjct: 86  TKRCKTFLNITQEDVDGGITFNEFIRKLNELDPDKNCTIVTW-GNMDMKVLKQNCM-FNH 143

Query: 116 DPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            P      +  LS+  +     R    L    + YG      + H AL D+     ++ K
Sbjct: 144 IPFPFKGELRDLSLEYKNFFGDRTLTGLWKAAEEYG-DKGTGTHHKALDDAMTTHKLF-K 201

Query: 174 MMVGGSQ 180
           ++    Q
Sbjct: 202 LVERDKQ 208


>gi|331015388|gb|EGH95444.1| hypothetical protein PLA106_05467 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 186

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 75/181 (41%), Gaps = 19/181 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +K   +  DIE +G       ++ IGA    +       F  +L P  ++  P AL+
Sbjct: 1   MNADKEIFVSVDIEASGPIPGKYSMLSIGACLTTN---PAEQFSCYLKPISKEFVPAALE 57

Query: 62  LHGIT-DEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQRINK 115
           + G++ D+  K+    +   S+F  +       +Q+  ++  NA FD  F+N    +   
Sbjct: 58  VTGLSLDKLRKEGLEPAEAMSQFKAWVESLAGADQSVVFVGFNASFDWSFVNYYFHQYLG 117

Query: 116 DPLDPSRIIDTLSI----ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +       +D  S+    A+    S+R+  +  +     ++      H AL D+   +++
Sbjct: 118 ENPFGIAALDIKSMFFGTAQCTWKSTRSSEIEKV-----VSPETSGNHDALDDAVYQAEL 172

Query: 171 Y 171
           +
Sbjct: 173 F 173


>gi|197335521|ref|YP_002156294.1| exodeoxyribonuclease I [Vibrio fischeri MJ11]
 gi|197317011|gb|ACH66458.1| exodeoxyribonuclease I [Vibrio fischeri MJ11]
          Length = 474

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 25/193 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSPE 58
           M + N      FD ET G     DR  +   V    D++       ++  P      SPE
Sbjct: 1   MQQNNAPSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPVDYLPSPE 60

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQ 111
           A  + GIT +   +K  S     ++     ++ N   + +N  +FD             +
Sbjct: 61  ACLITGITPQTAVNKGLSEPEFIAKIHHELSQPNTCSLGYNNIRFDDEVSRYTLYRNFFE 120

Query: 112 RINKDPLDPSRIIDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSK 157
                  + +   D L + R  +                    L +L    GI   H + 
Sbjct: 121 PYGWSWQNGNSRWDLLDVMRAVYALRPEGINWPKDEEGRPSFKLENLSVANGIE--HANA 178

Query: 158 HGALLDSHLLSDV 170
           H A+ D     ++
Sbjct: 179 HDAMADVIATIEL 191


>gi|45476845|sp|Q7TMF2|ERI1_MOUSE RecName: Full=3'-5' exoribonuclease 1; AltName: Full=3'-5'
           exonuclease ERI1; AltName: Full=Eri-1 homolog; AltName:
           Full=Histone mRNA 3'-exonuclease 1
 gi|28204890|gb|AAH46412.1| Exoribonuclease 1 [Mus musculus]
 gi|74179153|dbj|BAE42771.1| unnamed protein product [Mus musculus]
 gi|148703505|gb|EDL35452.1| three prime histone mRNA exonuclease 1 [Mus musculus]
          Length = 345

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 79/218 (36%), Gaps = 20/218 (9%)

Query: 9   KIVFDIETTG--LDSKN--DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T    +       IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 126 ICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNAQLSEFCIGL 185

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGFINAELQRINK-- 115
            GIT + +    +F  +  +  ++        +    I  +  +D+    +   R+++  
Sbjct: 186 TGITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLSRLK 245

Query: 116 DPLDPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            P    + I+        +  P S+  L  + ++ G+    R  H  L DS  ++ + ++
Sbjct: 246 HPAFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR-PHSGLDDSKNIARIAVR 304

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
           M+    Q     + NE     +      ++ +     P
Sbjct: 305 ML----QDGCELRINEKILGGQLMSVSSSLPVEGAPAP 338


>gi|149633012|ref|XP_001508919.1| PREDICTED: similar to Three prime histone mRNA exonuclease 1
           [Ornithorhynchus anatinus]
          Length = 467

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 82/223 (36%), Gaps = 20/223 (8%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             V D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 248 ICVIDFEATCEEGNPPEFIHEIIEFPIVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 307

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGFINAELQRINK-- 115
            GIT + +    +F  +  +  ++        +    I  +  +D+        RI+   
Sbjct: 308 TGITQDVVDRADTFPQVLQKVVEWMRQKELGTKYKYSILTDGSWDMSKFLTIQCRISHLK 367

Query: 116 DPLDPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            P    + I+        +  P S+  L  + ++ G++ + R  H  L DS  ++ + ++
Sbjct: 368 YPAFAKKWINIRKSYGNFYKVPRSQTKLAIMLEKLGMSYAGR-PHSGLDDSKNIARIAVR 426

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           M+  G Q+    + NE     +         +     P   R+
Sbjct: 427 MLQDGCQL----RVNEKMHAGQLTSVTSATPIEGMPAPNMPRV 465


>gi|157737359|ref|YP_001490042.1| hypothetical protein Abu_1113 [Arcobacter butzleri RM4018]
 gi|315637075|ref|ZP_07892298.1| exonuclease superfamily protein [Arcobacter butzleri JV22]
 gi|157699213|gb|ABV67373.1| hypothetical protein Abu_1113 [Arcobacter butzleri RM4018]
 gi|315478611|gb|EFU69321.1| exonuclease superfamily protein [Arcobacter butzleri JV22]
          Length = 171

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 27/179 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I+ D ET   ++  D ++EI AV++         F  +   +    +  + ++H +T E 
Sbjct: 2   IILDFETN-TNNIGD-VLEIAAVKIDKNFNILDKFHRYYL-SRFPLNFYSYEVHRLTPEL 58

Query: 70  LKDKPS-------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           + D          FS    +F  F  E     IAHN  F++  IN  ++  N        
Sbjct: 59  ILDYRKDKNYSSYFSED-EDFEKFCYESET-LIAHNISFELRHINNRVKFKN-------- 108

Query: 123 IIDTLSIAR-------RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            I T+S  +       +        L+  C  YGI       H A  D     ++  +M
Sbjct: 109 CICTMSENKNIVNVFGKNGRIKNPKLDETCNYYGIEFDASKYHSATYDVTKTYEILKRM 167


>gi|321477963|gb|EFX88921.1| hypothetical protein DAPPUDRAFT_311056 [Daphnia pulex]
          Length = 349

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 74/203 (36%), Gaps = 14/203 (6%)

Query: 9   KIVFDIETTG----LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKL 62
            ++ D E T       +    IIE    +      +    F+ +  P      +    +L
Sbjct: 116 YVIIDYEATCELLKHSNFKQEIIEFPAVLLNCQKGEVEDEFRSYCRPVLNPLLTEFCTEL 175

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVG-FINAELQRINKD 116
            GIT + +   P F  + + F ++        + +  I  +  +D+G F+  +      +
Sbjct: 176 TGITQDDVDKAPLFHEVLTSFEEWLQKKKLGSKYSFAIVTDGPWDIGYFLKNQCALSKIE 235

Query: 117 PLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                +  I+        + + +  L+++ +  G     R  H  L D+  ++ +  +++
Sbjct: 236 FPTYCKYWINIRKTFANFYNTGKMPLSTMIQLIGREFQGR-AHSGLDDARNIAFIVQRLV 294

Query: 176 VGGSQINFGFKTNEDRFFKEEKK 198
             G+++ F  K  E    + E  
Sbjct: 295 KDGARVVFNEKLAEGNARRREDG 317


>gi|71650868|ref|XP_814123.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70879069|gb|EAN92272.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 391

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 73/231 (31%), Gaps = 33/231 (14%)

Query: 6   KMRKIVFDIE-----TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEA 59
             R   FD+E       G D   + IIE G       +     F   + P NGR+ S E 
Sbjct: 84  PFRLFTFDLEFSGPPVFGPDGPTEDIIEFGFYSPAKDTV----FSCLVNPTNGRRVSQEV 139

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFF---------NEQNAEWIAHNAKF--DVGFIN 107
             L  IT E L K+   F   + +  +             +N   +  +     DV  I 
Sbjct: 140 TALTNITQEMLEKEGLPFPEAWEKVMETLMTPEPQELPGAENRLLVLSHGGKLADVSLIK 199

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRND---------LNSLCKRYGITISHRSKH 158
             L+    +        DT    R  H               L  L +   I  +    H
Sbjct: 200 WTLEAHGLELPPALVFGDTFHFIRDAHRRRPVTPDKHPPSWALADLVQWLKIPPTL-PAH 258

Query: 159 GALLDSHLLSD-VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
            A  D+ +  D +Y  +   G +     +    RFF EE + V      +R
Sbjct: 259 RAGNDAKMTWDALYHTLERYGDEDLTPREQLVSRFFDEEAREVMGQKNKRR 309


>gi|302388533|ref|YP_003824355.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           saccharolyticum WM1]
 gi|302199161|gb|ADL06732.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           saccharolyticum WM1]
          Length = 330

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 68/180 (37%), Gaps = 17/180 (9%)

Query: 9   KIVFDIE----TTGLDSKND----RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEA 59
            IV D+E      G D   +     IIEIGAV+L +  +    F+  + P        + 
Sbjct: 4   YIVLDLEWNQSAGGKDEAVEHLPFEIIEIGAVKLNEAMEEVGEFKRLIRPRIYPELHEKI 63

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DP 117
           L++  + ++ L ++  +F     +F  +  E+ A +       D+  +   +      +P
Sbjct: 64  LEVTHMDEKTLIQEGRNFEEAVKDFLTWCGEE-AVFCTW-GSMDLTELQRNMAYYGILNP 121

Query: 118 LD-PSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              P    D   +    +   ++   L+       + +  R  H AL D+H    +  KM
Sbjct: 122 FPKPFLYYDVQKLYSLLYGDGKDRQSLDIAVLEQQV-MEDRPFHRALDDAHYTGRILYKM 180


>gi|147921738|ref|YP_684442.1| hypothetical protein LRC94 [uncultured methanogenic archaeon RC-I]
 gi|110619838|emb|CAJ35116.1| hypothetical protein LRC94 [uncultured methanogenic archaeon RC-I]
          Length = 191

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 59/180 (32%), Gaps = 25/180 (13%)

Query: 11  VFDIETTGL-------DSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLC-PNGRKNSP 57
           V D+E TGL          +D  + IG +     E     +   +F   +  PN  K   
Sbjct: 6   VVDLEMTGLGKFDKANPVDDDYPVSIGIILAGVDEEGKAIRCLDSFHTLIRIPNPSKVEE 65

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKD 116
            ++  H I  E L+  P    +  +   F+ +       A N + D  F++  L ++ K 
Sbjct: 66  TSI-FHHIYPEDLEAAPKPKEVCGQIRKFYEKHGEIPAAAWNHRVDRHFVD-ILFKMGKM 123

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKM 174
                + ++         P     L     +Y    +      H AL D      V   +
Sbjct: 124 ESPIRKWVE-------LQPEKMASLEKYVDKYVQDPAILGLDAHDALNDCIRTVGVMAAL 176


>gi|47566945|ref|ZP_00237662.1| exonuclease KapD [Bacillus cereus G9241]
 gi|52140617|ref|YP_086215.1| sporulation inhibitor KapD [Bacillus cereus E33L]
 gi|229158512|ref|ZP_04286572.1| Sporulation inhibitor KapD [Bacillus cereus ATCC 4342]
 gi|47556263|gb|EAL14597.1| exonuclease KapD [Bacillus cereus G9241]
 gi|51974086|gb|AAU15636.1| sporulation inhibitor [Bacillus cereus E33L]
 gi|228624948|gb|EEK81715.1| Sporulation inhibitor KapD [Bacillus cereus ATCC 4342]
          Length = 207

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 20/189 (10%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            ++ R +  D E T         G   +   IIE+G V ++   K   T+   + P    
Sbjct: 1   MDEQRFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSAHVRPKTFP 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +    K  GI  E +    SF  +  +  ++        +      D+  +    ++ 
Sbjct: 57  SLTDRCKKFLGIKQEVVDKGISFPELVEKLAEYEKRCKPTIVTW-GNMDMKVLKHNCEKA 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             D     +  D     ++     RN   L    + YG  +     H AL D+    +++
Sbjct: 116 GVDFPFLGQCRDLSLEYKKFF-GERNQTGLWKAIEAYG-KVGTGKHHCALDDAMTTYNIF 173

Query: 172 IKMMVGGSQ 180
            K++    +
Sbjct: 174 -KLVEKDKE 181


>gi|213156193|ref|YP_002318613.1| exodeoxyribonuclease X [Acinetobacter baumannii AB0057]
 gi|301347300|ref|ZP_07228041.1| exodeoxyribonuclease X [Acinetobacter baumannii AB056]
 gi|301597518|ref|ZP_07242526.1| exodeoxyribonuclease X [Acinetobacter baumannii AB059]
 gi|213055353|gb|ACJ40255.1| exodeoxyribonuclease X [Acinetobacter baumannii AB0057]
          Length = 226

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 88/243 (36%), Gaps = 46/243 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT----NRTFQVFL-CPNGRKNSPEAL 60
           M+ ++ D ET   ++ N   IEI       +  +     +  F  +  CP       EA+
Sbjct: 1   MKALILDTET---NTLNGYPIEIAYTPFSFENGQIQIHKDHAFSRYFSCPE--PIDLEAM 55

Query: 61  KLHGITDEFLKDKPSFSSI-FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +H I +  ++ +PS  +    +  +F        + HN  +D+  +N         P  
Sbjct: 56  AVHNIIEADIEGQPSCEAFRLPDGVEFI-------VGHNIDYDIKALNKC------GPAI 102

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLC-----KRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++ I TL++AR   P    + L  L       R       R  H A  D +    + I 
Sbjct: 103 KAKTICTLALARDVWPELPSHKLAVLYYFIMSNREEARKHLRHAHSARADVYFTGIILIA 162

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNI---------SLLKRDKPLFT-RITKEELDE 223
           ++        G K     F   E   +P I          L +  +P  +  + KE+LD 
Sbjct: 163 LIE-----RLGIKDLNSLFLMSEAVRLPKIMTWGKHKGTPLKELPRPYISWLLNKEDLDP 217

Query: 224 HDK 226
           H +
Sbjct: 218 HLR 220


>gi|325275518|ref|ZP_08141430.1| exonuclease [Pseudomonas sp. TJI-51]
 gi|324099350|gb|EGB97284.1| exonuclease [Pseudomonas sp. TJI-51]
          Length = 183

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 12/173 (6%)

Query: 9   KIVFDIETT---GLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E T   G     +  +IEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLVIDLEATTDEGGWPVTEMEVIEIGASLVTREGREVDHFQRFVRPRRRPQLTPFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            I+   +     F  +++ F  +     EQ   W++    +D   ++ E      D L  
Sbjct: 64  HISQADVDAAAPFREVWASFEHWLGQHREQLQAWVSW-GDYDRQQLHQEWHLHGVDSLLR 122

Query: 121 SRIIDTL--SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +     L    A+ +H      LN   +  G+    +  H AL D+   + + 
Sbjct: 123 TLAHINLKQRFAKARHLQRPAGLNGALQLAGMHFCGQQ-HRALEDARNTARLL 174


>gi|307106672|gb|EFN54917.1| hypothetical protein CHLNCDRAFT_134628 [Chlorella variabilis]
          Length = 786

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67
            + FD+ET+GL  K   I E GAV     +    TF  ++C P G    PEA K  G+T 
Sbjct: 29  PVAFDLETSGL-GKKACITEFGAV----GAGGTATFHEYVCLPPGVVMDPEATKTTGLTA 83

Query: 68  EFLKD-KPSFSSIFSEFWDFFNEQNAEWIAH 97
           EFL +    F   +  F  F  +Q  + ++H
Sbjct: 84  EFLAENGRPFEEAYPRFVSFLRQQRPD-VSH 113


>gi|90416366|ref|ZP_01224298.1| exodeoxyribonuclease I [marine gamma proteobacterium HTCC2207]
 gi|90332091|gb|EAS47305.1| exodeoxyribonuclease I [marine gamma proteobacterium HTCC2207]
          Length = 478

 Score = 72.2 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 78/224 (34%), Gaps = 31/224 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEF- 69
           D ET G++   DR  +   +    D +       ++  P       P+A  + GIT +  
Sbjct: 9   DYETFGINPSIDRPSQFAGLRTDFDLNPIGEPLVIYCQPQPDLLPAPQACLVTGITPQHA 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR------ 122
           LK+  +  +         +  N   + +N+ +FD       L R   DP           
Sbjct: 69  LKEGLAEPAFIEAIHQQMSRANTCSVGYNSIRFDDEVTRYTLYRNFYDPYQREWKNGNSR 128

Query: 123 --IIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             IID L + R   P                L  L    G  ++H + H AL D  + + 
Sbjct: 129 WDIIDMLRLCRALRPEGIEWPDHEPGRPSFRLEDLTAANG--LAHEAAHDALSD--VTAT 184

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
           + +  +V   Q        ++R     KK V  +  LK  KP F
Sbjct: 185 IAMAKLVKDKQPRLFDYALQNR----GKKQVAAMLDLKARKPFF 224


>gi|26379605|dbj|BAB29127.2| unnamed protein product [Mus musculus]
          Length = 345

 Score = 72.2 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 78/218 (35%), Gaps = 20/218 (9%)

Query: 9   KIVFDIETTG--LDSKN--DRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKL 62
             + D E T    +       IIE   V L  +  +   TFQ ++ P      S   + L
Sbjct: 126 ICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNDQLSEFCIGL 185

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGFINAELQRINK-- 115
            GIT + +    +F  +  +  ++        +    I  +  +D+    +   R+++  
Sbjct: 186 TGITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLSRLK 245

Query: 116 DPLDPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            P    + I+        +  P S+  L  + ++ G+    R  H  L DS  ++ + I+
Sbjct: 246 HPAFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR-PHSGLDDSKNIARIAIR 304

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
           M+    Q     + NE     +      ++ +     P
Sbjct: 305 ML----QDGCELRINEKILGGQLMSVSSSLPVEGAPAP 338


>gi|165905605|ref|NP_080343.4| 3'-5' exoribonuclease 1 [Mus musculus]
 gi|26380424|dbj|BAB29333.2| unnamed protein product [Mus musculus]
 gi|74228094|dbj|BAE38007.1| unnamed protein product [Mus musculus]
          Length = 345

 Score = 72.2 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 78/218 (35%), Gaps = 20/218 (9%)

Query: 9   KIVFDIETTG--LDSKN--DRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKL 62
             + D E T    +       IIE   V L  +  +   TFQ ++ P      S   + L
Sbjct: 126 ICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNDQLSEFCIGL 185

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGFINAELQRINK-- 115
            GIT + +    +F  +  +  ++        +    I  +  +D+    +   R+++  
Sbjct: 186 TGITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLSRLK 245

Query: 116 DPLDPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            P    + I+        +  P S+  L  + ++ G+    R  H  L DS  ++ + I+
Sbjct: 246 HPAFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR-PHSGLDDSKNIARIAIR 304

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
           M+    Q     + NE     +      ++ +     P
Sbjct: 305 ML----QDGCELRINEKILGGQLMSVSSSLPVEGAPAP 338


>gi|325918073|ref|ZP_08180231.1| Exodeoxyribonuclease I subunit C [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535696|gb|EGD07534.1| Exodeoxyribonuclease I subunit C [Xanthomonas vesicatoria ATCC
           35937]
          Length = 481

 Score = 72.2 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 63/182 (34%), Gaps = 25/182 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV         +     F+ P +    SP A  + GIT
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIDEPISFFVQPADDLLPSPYATMVTGIT 64

Query: 67  DEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI- 123
            +  L++  S +  F+   +  +      + +N+ +FD  F+   L R   DP +     
Sbjct: 65  PQHALREGVSEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREWRG 124

Query: 124 -------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                  +D L +     P                L  L       +     H AL D +
Sbjct: 125 GNSRWDLLDVLRLVHALRPEGITWPQREDGATSFKLEHLADA--NAVREGDAHEALSDVY 182

Query: 166 LL 167
             
Sbjct: 183 AT 184


>gi|285018531|ref|YP_003376242.1| exodeoxyribonucleaseIprotein [Xanthomonas albilineans GPE PC73]
 gi|283473749|emb|CBA16252.1| putative exodeoxyribonucleaseIprotein [Xanthomonas albilineans]
          Length = 492

 Score = 72.2 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 66/182 (36%), Gaps = 25/182 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV      ++       F+ P +    SP A  + GIT
Sbjct: 18  FLFYDLETFGADPRRTRIAQFAAVRTDAALNQIEEPISFFVQPADDLLPSPVATLITGIT 77

Query: 67  D-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR-- 122
             + L++  + +  F+   +   +     + +N+ +FD  FI   L R   DP +     
Sbjct: 78  PQQALREGINEADAFARIAEQMAQPQTCTLGYNSLRFDDEFIRHGLFRNFHDPYEREWRG 137

Query: 123 ---IIDTLSIARRKH---PSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                D L + R  H   P                L  L    G+       H AL D +
Sbjct: 138 GNSRWDLLDMLRLMHALRPDGIVWPQREDGATSFKLEQLALANGVR--DGDAHEALSDVY 195

Query: 166 LL 167
             
Sbjct: 196 AT 197


>gi|167567824|ref|ZP_02360740.1| Transposase and inactivated derivatives-like protein [Burkholderia
           oklahomensis EO147]
          Length = 248

 Score = 72.2 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 11/132 (8%)

Query: 48  LCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           + P         + +HGI +  +KD P+F  I++   D   +Q    +  +  FD   + 
Sbjct: 2   VNPQDY-FDWINIDIHGIDETTVKDAPTFQQIYAAMLDRLRDQ---VVVSHTSFDRTALF 57

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDS 164
             + + N   +   + +D+  + RR           L ++C   GI+    + H A+ D+
Sbjct: 58  QAIAKHNLTAVS-CQWLDSARVVRRAWAQWSRAGYGLTNVCNTLGISF---TAHDAVEDA 113

Query: 165 HLLSDVYIKMMV 176
               +V ++ + 
Sbjct: 114 RAAGEVLLQAIR 125


>gi|330957883|gb|EGH58143.1| exonuclease I [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 476

 Score = 71.8 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 72/226 (31%), Gaps = 26/226 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ +NDR +++  +    D ++      ++  P+      P A  + GIT   L
Sbjct: 9   DYETTGINPRNDRALQMAGIRTDADLNEIAPPVNLYCQPSDDILPHPAACLITGITPTLL 68

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +K  S +   +      +        +N  +FD       L R   DP           
Sbjct: 69  AEKGLSEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    GI   H   H AL D      +
Sbjct: 129 WDLIDVVRAAYALRPDGIVWPEQDGRVTLKLERLTAANGID--HGQAHDALSDVRAT--I 184

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            +  ++   Q          R  ++ +  +  +  L      F+  
Sbjct: 185 ALARLIREKQPRLYDYLFALRSKQKVQDQIRLMQPLVHISGRFSAA 230


>gi|320156592|ref|YP_004188971.1| exodeoxyribonuclease I [Vibrio vulnificus MO6-24/O]
 gi|319931904|gb|ADV86768.1| exodeoxyribonuclease I [Vibrio vulnificus MO6-24/O]
          Length = 473

 Score = 71.8 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 75/238 (31%), Gaps = 25/238 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M + N+     FD ET G     DR  +   V    +++       ++  P       PE
Sbjct: 1   MQQDNQPSFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +   K+        ++     +  N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKAQKEGLPEPEFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L    GI   H + 
Sbjct: 121 PYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
           H A+ D     ++  K+     ++   F +   +    E   + N++ L     +  R
Sbjct: 179 HDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGR 236


>gi|296219709|ref|XP_002756006.1| PREDICTED: ERI1 exoribonuclease 2 [Callithrix jacchus]
          Length = 687

 Score = 71.8 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 29/197 (14%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE    +      +    F  ++ P      S   ++L 
Sbjct: 38  IVIDFESTCWNDGKRHHSQEIIEFPAVLLNTSTGQIESEFHAYVQPQEHPILSEFCMELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN----EQNAE--------------WIAHNAKFDVG- 104
           GI    + +        S+F  + +    ++N                  A     D   
Sbjct: 98  GIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFAAGVSEPSTSEVNLCAFVTWSDWDL 157

Query: 105 --FINAELQRINK-DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +  E +R     P+  +  ID  +  +  +      L+   +  GI  S R  H  L
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGRE-HSGL 216

Query: 162 LDSHLLSDVYIKMMVGG 178
            DS   + +  KM+  G
Sbjct: 217 DDSRNTALLAWKMIKDG 233


>gi|241668749|ref|ZP_04756327.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877280|ref|ZP_05249990.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843301|gb|EET21715.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 482

 Score = 71.8 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 28/196 (14%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEALKL 62
                + +D+ETTG+++  D++++  A+           F  F+   P+    SP A   
Sbjct: 3   QNQTFLFYDLETTGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTP-SPIATIT 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFIN-------------- 107
           H I+        S      +     N      I +N   FD  F+               
Sbjct: 62  HHISIAQANTGVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121

Query: 108 --AELQRINKDPLDPSRII---DTLSIARRKHPSSRN----DLNSLCKRYGITISHRSKH 158
                 R +  P+     +   D L   +      +      L +L     +  S    H
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNDVLKWPKVLDEEGQRKISLKLENLNTENNL-YSGGRAH 180

Query: 159 GALLDSHLLSDVYIKM 174
            A+ D  +  ++  K+
Sbjct: 181 DAITDVIVTVELAKKL 196


>gi|257453522|ref|ZP_05618812.1| putative exodeoxyribonuclease X [Enhydrobacter aerosaccus SK60]
 gi|257448980|gb|EEV23933.1| putative exodeoxyribonuclease X [Enhydrobacter aerosaccus SK60]
          Length = 236

 Score = 71.8 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 79/222 (35%), Gaps = 26/222 (11%)

Query: 11  VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRT---FQVFLCPNGRKNSPEALKLHGIT 66
           + D E  GL +     I  IG V         +T   F+    P+ +K +  +  + GI 
Sbjct: 5   ILDTEAHGLVEPHATEIAYIGVVFSPAGELILQTHNAFEQRFNPH-KKITLGSQAITGIF 63

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           D+ + DKP  +       DF   ++ E  I HN  FD   +           L   + I 
Sbjct: 64  DDDVADKPPHT-------DFQLPKDCEYLIGHNIDFDADVLTNANC-----DLSNIKRIC 111

Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMMVGGSQI 181
           TL++AR   P    + L +L   +   ++ ++    HGA  D      V +K +    +I
Sbjct: 112 TLALARHFFPQLDSHSLGALLCFFEPQVAKKNIKFAHGAKYDIWFTFLV-LKAICSQHRI 170

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
                  +     E  +    I   K        +  + +D 
Sbjct: 171 T---DMAQLYQASEHARKPTVIRFGKHKGVAIKDLPPDYVDW 209


>gi|209885528|ref|YP_002289385.1| exonuclease, RNase T and DNA polymerase III [Oligotropha
           carboxidovorans OM5]
 gi|209873724|gb|ACI93520.1| exonuclease, RNase T and DNA polymerase III [Oligotropha
           carboxidovorans OM5]
          Length = 184

 Score = 71.8 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 14/179 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M RK ++  +  D+ET G       ++ IGA ++ D +K    F   L P  R   P+AL
Sbjct: 1   MTRKKEV-FVSVDVETAGPIPGEYSLLSIGACDVGDLTKV---FSCELKPINRNADPKAL 56

Query: 61  KLHGITDEFL-KDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQR-I 113
           ++ G++ + L +D     +    F D+      N+++  ++  NA FD  F+N    R +
Sbjct: 57  EVSGLSLDKLSRDGLDPRAAMQAFADWLAGLAENDRSIVFVGLNAPFDWSFVNYYFHRFL 116

Query: 114 NKDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +P    +  I  L +       +    + + +R  +    +  H AL D+   ++++
Sbjct: 117 GSNPFGFTALDIKALYMGAVGCDWAETKSSKMAER--LAPRRKGDHQALHDAQYQAELF 173


>gi|89894542|ref|YP_518029.1| sporulation inhibitor KapD [Desulfitobacterium hafniense Y51]
 gi|89333990|dbj|BAE83585.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 222

 Score = 71.8 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 65/212 (30%), Gaps = 34/212 (16%)

Query: 6   KMRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKT--NRTFQVFLCPNGRK 54
           KM  +V D E                   IIE+GA  L    K   ++TF  F+ P    
Sbjct: 13  KMDFLVVDFE---FSVPQSYGKPRAWFPEIIEVGATVLDSNGKLALDKTFNAFVKPRFWP 69

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             + E+  + GI  E +                 + + A  +A     D   +    ++ 
Sbjct: 70  RLAEESYGITGIRQEDVDQGILLEEAIQHLQKLAHPE-AYVVAWGDA-DRKILGNVCEKY 127

Query: 114 NKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS------KHGALLDSHL 166
               P      ID     +         L+ L       I   S       H AL D+  
Sbjct: 128 GLKYPFVWENYIDLAEQYKHY-----RSLDHLIS-LKKAIEENSIEQIGILHSALDDAIN 181

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
            + V  +MM  G       KT E     EEK+
Sbjct: 182 AAQVMARMMSEGWM----VKTGEQAHGSEEKR 209


>gi|221132558|ref|XP_002167097.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 287

 Score = 71.8 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 13/183 (7%)

Query: 9   KIVFDIETTGLDSK----NDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALK-L 62
            +V D E T  +         IIE  AV +     +    F  +  P       E  K L
Sbjct: 97  YVVIDFEATCDEPNPSGFQHEIIEFPAVLVKTSTLEIVSEFHSYCRPVINPVLSEFCKSL 156

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAE----WIAHNAKFDV-GFINAELQRINKD- 116
            GIT   ++    F  +   F  +  +Q        IA +  +D+  F+  + + +N   
Sbjct: 157 TGITQVQVESSSVFEVVLQRFDKWLKQQVMPTETFCIATDGPWDLDRFLKNQCKTLNIQI 216

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P    R ++        +  ++ ++  + +  G+    R  H  + D+  ++ + I+++ 
Sbjct: 217 PHYFHRWVNIRKHFYNYYKINQANVELMLQHLGMEFEGR-PHRGIDDARNIARILIQLIR 275

Query: 177 GGS 179
            G+
Sbjct: 276 DGA 278


>gi|256026220|ref|ZP_05440085.1| YacC [Escherichia sp. 4_1_40B]
          Length = 293

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 10/132 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD    + +EIG  +          F+  L P       +A  +HGI+++
Sbjct: 104 PLFLDTETTGLD-NTAKALEIGLTDATGQVV----FETRLKPTVA-IGAQAAAVHGISEQ 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            L   PS++ +  +      ++    I  NA+FD+  +       +   D L+   +   
Sbjct: 158 ALCGAPSWTDVARQLRHAIGDR--PVIIFNARFDIRILKQTAAAHSDPADWLEELTVYCA 215

Query: 127 LSIARRKHPSSR 138
           + +A   +    
Sbjct: 216 MELAAGYYGGPP 227


>gi|294461520|gb|ADE76321.1| unknown [Picea sitchensis]
          Length = 436

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 69/206 (33%), Gaps = 19/206 (9%)

Query: 9   KIVFDIETT---GLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSPEAL-KL 62
            +V D E T   G       IIE  +V L++    +    F  ++ P       +   +L
Sbjct: 144 FVVIDFEATCDMGTRLSPQEIIEFPSV-LVNGMTGRLEGHFHTYIKPVYHPVLTDFCKEL 202

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRIN--K 115
            GI    +    S S       ++  E+         +   + +D   +      +   +
Sbjct: 203 TGIQQSQVIGGVSLSEALLMHDNWLEERGVKNTNFAVVTW-SDWDCKVMLESECNLKGIR 261

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P   +R I+            R +L    +  G+T   R  H  L D+   + + + +M
Sbjct: 262 KPNYFNRWINLKLPFYDSFGQLRCNLKGAVEFAGLTWEGR-AHSGLDDAKNTARLLLDLM 320

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVP 201
             G ++     TN   +      T+P
Sbjct: 321 RRGIKLTI---TNSMLYASANGSTLP 343


>gi|304413420|ref|ZP_07394893.1| exonuclease I [Candidatus Regiella insecticola LSR1]
 gi|304284263|gb|EFL92656.1| exonuclease I [Candidatus Regiella insecticola LSR1]
          Length = 475

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 69/207 (33%), Gaps = 28/207 (13%)

Query: 1   MIRK-NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS-P 57
           M+ +  K    V D ET G +   DR ++   V   D  +  +    ++  P       P
Sbjct: 1   MLEQCKKSTFYVHDYETFGQNPALDRPVQFAGVRTDDDFNIIDDPLVIYCAPANDYLPQP 60

Query: 58  EALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  LK   + +    +    F+      + +N  +FD         R   
Sbjct: 61  EAVLITGITPQYALKHGVNEAEFCQKIHQQFSVAGTCTLGYNNIRFDDEVSRNIFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRS 156
           DP   +          +D +       P   N            L  L K  GI   H  
Sbjct: 121 DPYAYNWQNGNSRWDLLDVVRACYALRPEGINWPKNADGLPSFKLEHLAKANGIQ--HLK 178

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINF 183
            H A+ D +   ++    +V  +Q   
Sbjct: 179 AHDAMSDVYATIEL--AKLVKQAQPRL 203


>gi|170720191|ref|YP_001747879.1| exonuclease I [Pseudomonas putida W619]
 gi|169758194|gb|ACA71510.1| Exodeoxyribonuclease I [Pseudomonas putida W619]
          Length = 478

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 24/177 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ + DR +++  V    + ++ +    ++  P+      P A  + GIT + L
Sbjct: 9   DYETTGINPRCDRPLQVAGVRTDFELNEIDEPISLYCRPSDDILPHPAACLVTGITPQQL 68

Query: 71  KDKPS-FSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
             +    +   +               +N  +FD       L R   DP           
Sbjct: 69  ASQGLGEAEFMTRVHAQLALPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              ID +  A    P               L  L K  GI   H   H AL D    
Sbjct: 129 WDLIDVVRTAYALRPEGIVWPQQDGRTSLRLELLSKANGID--HGHAHEALSDVRAT 183


>gi|153833726|ref|ZP_01986393.1| exodeoxyribonuclease I [Vibrio harveyi HY01]
 gi|148870005|gb|EDL68965.1| exodeoxyribonuclease I [Vibrio harveyi HY01]
          Length = 473

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 66/204 (32%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M + N+     FD ET G     DR  +   V    +++       ++  P       PE
Sbjct: 1   MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +  +++        ++     ++ N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKAMQEGLPEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIEMAKKVKAAQPKL 202


>gi|126698941|ref|YP_001087838.1| putative exonuclease [Clostridium difficile 630]
          Length = 220

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 78/214 (36%), Gaps = 35/214 (16%)

Query: 40  TNRTFQVFLCPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98
              TF  ++ P   +   P   ++  I +    D P+F  +++ F  F + Q+       
Sbjct: 7   IIDTFNSYIKPTIYKDIHPFISRMTNIKNSDFNDSPTFPEVYNNFIKFISSQDPILCV-- 64

Query: 99  AKFDVGFINAELQRINKDPLD----PSRIIDTLSIARRKH--PSSRN-DLNSLCKRYGIT 151
             +  G +    + IN   L     P   I+    A +    P+ ++  L +      + 
Sbjct: 65  --WGAGDLKELYRNINYHKLPSNSLPKSYINIQQHASKYFNNPAGKSIGLQNAISILELD 122

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
               S H AL D++  + V+IK+                         VP+I L    KP
Sbjct: 123 -EKMSYHNALNDAYYTAKVFIKI--------------------YNPSIVPDIYLYTSIKP 161

Query: 212 LFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245
              R + ++  ++DK      K  I +R ++ ++
Sbjct: 162 KTIRYSNKKRVDYDKLFDEFRK--ILNRELTKDE 193


>gi|146092931|ref|XP_001466577.1| hypothetical protein [Leishmania infantum]
 gi|134070940|emb|CAM69616.1| conserved hypothetical protein [Leishmania infantum JPCM5]
 gi|322500705|emb|CBZ35782.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 405

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 16/208 (7%)

Query: 9   KIVFDIETTGLDSKN---DRIIEI-GAVELLDYSKTNR--TFQVFLCP-NGRKNSPEALK 61
            IV D+E T   +       +IEI G +  +   + +R  +F  F+ P    + +P   +
Sbjct: 76  IIVVDVEATCEQNSRNYPHEVIEIPGVLIDVRTGQVDRARSFHTFVKPWRNSRLTPFCTQ 135

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE---QNA-EWIAHNAKFDV-GFINAE--LQRIN 114
           L GIT E +   PS +     F  ++ E   + A    A +  +D   FI+    L+   
Sbjct: 136 LTGITQEVVDAAPSITEAIQLFEKWYRETIPRGAKTIFAADGPWDFKNFIHEHHILRDHV 195

Query: 115 KDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             P      +D   + A   +      L+++ ++  +    R  H    D++ ++ + + 
Sbjct: 196 GFPSIFYEYLDIRTTFAHHLNHGVPIKLDAMLRKMNLRFDGR-PHNGFDDAYNIARLAVA 254

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVP 201
           MM  G  ++F      D  +      VP
Sbjct: 255 MMKAGCVLDFVIAIPLDDAYHYHLDGVP 282


>gi|119946086|ref|YP_943766.1| exodeoxyribonuclease I [Psychromonas ingrahamii 37]
 gi|119864690|gb|ABM04167.1| Exodeoxyribonuclease I subunit C [Psychromonas ingrahamii 37]
          Length = 486

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 64/178 (35%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET GL+   DR  +   +   LD +  +   + +  P       PEA  + GIT +  
Sbjct: 23  DYETFGLNPGTDRPAQFAGIRTDLDLNIISEPDEWYCRPPNDYLPNPEACLITGITPQRA 82

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR------ 122
           L+     S   +     F+++N   + +N  +FD       L R  +DP           
Sbjct: 83  LQKGMVESEFIALINQRFSQKNTCVVGYNNIRFDDEITRFTLYRNFRDPYQREWKNGCSR 142

Query: 123 --IIDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLL 167
             IID +       P   N            L  L K  G  ++H+  H A+ D +  
Sbjct: 143 WDIIDLVRACYALRPEGINWPVDENDAPSFRLELLTKENG--LAHQQAHDAMSDVYAT 198


>gi|229169634|ref|ZP_04297336.1| Sporulation inhibitor KapD [Bacillus cereus AH621]
 gi|228613830|gb|EEK70953.1| Sporulation inhibitor KapD [Bacillus cereus AH621]
          Length = 207

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 20/189 (10%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            ++ R +  D E T         G   +   IIE+G V ++   K   T+   + P    
Sbjct: 1   MDEQRFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSSHIRPKTFP 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +    K  GI  E +    SF  +  +  ++        +      D+  +    +  
Sbjct: 57  SLTDRCKKFLGIKQEVVDKGISFHELVEKLAEYEKSCKPTIVTW-GNMDMKVLKHNCEMA 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +     +  D     ++     RN   L    + YG        H AL D+    +++
Sbjct: 116 GVEFPFFGQCRDLSLEYKKFF-GERNQTGLWKAIEAYG-KAGTGKHHCALDDAMTTYNIF 173

Query: 172 IKMMVGGSQ 180
            K++    +
Sbjct: 174 -KLVEKDKE 181


>gi|239629146|ref|ZP_04672177.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519292|gb|EEQ59158.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 315

 Score = 71.8 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 16/179 (8%)

Query: 7   MRKIVFDIETT-GLDSKND-------RIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSP 57
           M  IV D+E     + K D        IIEIGAV L    +    F   + P   +K   
Sbjct: 1   MNYIVLDLEWNQSPNGKEDSVEHLPFEIIEIGAVMLDHQFRAAGEFHKLIKPQVYKKMHF 60

Query: 58  EALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           +  ++  +  + L ++   F ++  EF D+  E +  +       D+  +   +     +
Sbjct: 61  KISEVTHMDMKKLCQEGQPFKAVMQEFLDWCGEGDFRFCTW-GSMDLTELQRNMIYHKME 119

Query: 117 PLDPSR--IIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              P      D   +   ++   +N   L+   +  G+    R  H AL D++    + 
Sbjct: 120 IPFPRPLLYYDIQKLYCLQYGDGKNKVSLDQAVQLQGMA-EDRPFHRALDDAYYTGKIL 177


>gi|148244981|ref|YP_001219675.1| exodeoxyribonuclease I [Candidatus Vesicomyosocius okutanii HA]
 gi|146326808|dbj|BAF61951.1| exodeoxyribonuclease I [Candidatus Vesicomyosocius okutanii HA]
          Length = 473

 Score = 71.8 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 56/178 (31%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFLK 71
           D ET G+  K DRI +   +   +          +  P N    SPE   + GI+ +  +
Sbjct: 8   DYETFGISPKIDRISQFAGIRTDENFNILDEQMFYCKPTNDCLLSPETCLITGISPQLCE 67

Query: 72  DKPSFSS-IFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR-----II 124
            K         +     +  +   I +N+ +FD  F    L R   DP            
Sbjct: 68  QKGMIEHKFIKKIHAQLSTPDTCVIGYNSIRFDDEFTRYALYRNFIDPYTWHWKNGNTRW 127

Query: 125 DTLSIARRKHPSSR---------------NDLNSLCKRYGITISHRSKHGALLDSHLL 167
           D L + R  +   +                 L+ L       I H   H AL D +  
Sbjct: 128 DILDVVRLCYALKKDTSLKWVYDEQNKVIFKLDQLS--LANNIEHTYAHNALADVYAT 183


>gi|293344344|ref|XP_002725706.1| PREDICTED: exonuclease domain containing 1-like [Rattus norvegicus]
          Length = 687

 Score = 71.4 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 72/226 (31%), Gaps = 29/226 (12%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE    +      +    F  ++ P      S    +L 
Sbjct: 38  IVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFD 102
           GI    + +        S+F  + ++                     +   ++  +    
Sbjct: 98  GIKQVQVDEGVPLKICLSQFGKWIHKLQQQKKISFATGDSEPSTPEVKPCAFVTWSDWDL 157

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +  E +R     P+  +  ID  +  +  +      L+   +  GI  S R  H  L
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYNRKPKGLSGALQEVGIEFSGRE-HSGL 216

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207
            DS   + +  KM+  G  +      N+    K  K    N+ L +
Sbjct: 217 DDSRNTALLAWKMIRDGCLMKITRSLNKVLTKKNPKILARNLGLDQ 262


>gi|323191668|gb|EFZ76924.1| exonuclease family protein [Escherichia coli RN587/1]
          Length = 153

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 14/149 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD      +EIG  +          F+  L P       +A  +HGI+++
Sbjct: 13  PLFLDTETTGLD-NTAEALEIGLTDASGQVV----FETRLKPTVA-IGAQAAAVHGISEQ 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            L   P ++ +  +       +    I  NA+FD+  +       +   D L+   +   
Sbjct: 67  ALCGAPLWTDVARQLRHAIGGR--PVIIFNARFDIRILKQTAAAHSDPADWLEEMTVYCA 124

Query: 127 LSIARRKHPSSRN----DLNSLCKRYGIT 151
           + +A   + ++       L S   + G+T
Sbjct: 125 MELAAGYYGATNRYGTISLASAASQAGLT 153


>gi|307110876|gb|EFN59111.1| hypothetical protein CHLNCDRAFT_137905 [Chlorella variabilis]
          Length = 357

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 75/188 (39%), Gaps = 25/188 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP------NGRKNSPEALKLH 63
           +V D ETTGL  + D I ++  + L          +   CP        + +   A  + 
Sbjct: 111 LVLDSETTGLSGR-DYIHQLAVLNLSSCQLLTALLRT--CPRTTGPAAAKASPAGAGSVC 167

Query: 64  GITDEFLKD--KPSFSSIFSEFWDFFNEQNAE------------WIAHNAKFDVGFINAE 109
           G  ++ L D  +P+F  +      F                    + HNA FD   + AE
Sbjct: 168 GANNQALHDPNRPTFGQLAPLLHAFIAGGGVTSGSGGHQPAPPLVVGHNAPFDARMLIAE 227

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSK-HGALLDSHLL 167
             R +       R++DTL +AR   P  + +   +L +R+G+T++     H A  D  +L
Sbjct: 228 WGRRDLPVPREWRLLDTLPLARECVPDCANHKQGTLRQRFGVTLAPGEAEHDAGSDVTVL 287

Query: 168 SDVYIKMM 175
           + +   ++
Sbjct: 288 AQLLPHLV 295


>gi|229826629|ref|ZP_04452698.1| hypothetical protein GCWU000182_02005 [Abiotrophia defectiva ATCC
           49176]
 gi|229789499|gb|EEP25613.1| hypothetical protein GCWU000182_02005 [Abiotrophia defectiva ATCC
           49176]
          Length = 313

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 32/191 (16%)

Query: 7   MRKIVFDIETT-GLDSKND-------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           MR IVFD+E   G  SK +        IIEIGAV+L ++ K   +F   + P      PE
Sbjct: 1   MRYIVFDLEWNQGYPSKEESEKSLPFEIIEIGAVKLDEHFKIIDSFHRIIKP---VVYPE 57

Query: 59  ALKLHG----ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-----------DV 103
             K       +T++ L     F +   EF  +  + +      N  F             
Sbjct: 58  LFKYTKELIPLTEKDLSKGTDFVTACKEFLKWCRKGDR-----NYSFATWGTLDLLELQR 112

Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                E+      PL    +    +I   K+  +   L +  K   +    ++ H A+ D
Sbjct: 113 NMAFFEVYNCFSRPLYYYNVQYLFNIFMEKYDETVFSLENAIKYLELD-EDKAFHSAISD 171

Query: 164 SHLLSDVYIKM 174
           +   +++   +
Sbjct: 172 AEYTAEILRHI 182


>gi|222153714|ref|YP_002562891.1| DNA polymerase III subunit epsilon [Streptococcus uberis 0140J]
 gi|222114527|emb|CAR43445.1| putative exonuclease [Streptococcus uberis 0140J]
          Length = 196

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 23/176 (13%)

Query: 9   KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            I FD+E    ++ ND+  +I++ AV++   ++ +  F  ++             L GIT
Sbjct: 7   FIAFDLE---FNTVNDKSHLIQLSAVKIDADTEID-HFNSYVY-TDVPLQSFINGLTGIT 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIID 125
            + +   P   ++ S F  F +  +   I +NA   D+  +       N   L     +D
Sbjct: 62  ADKIAQAPKIEAVLSAFKAFVS--DYPLIGYNAHKSDLPILAE-----NGLDLSNHYRVD 114

Query: 126 TLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
               A  +  +  N      L S+    GI       H +L D+ + + VY   M 
Sbjct: 115 VYDEAFERRSTDLNGIANLKLTSVADFLGIK---GRGHNSLEDARMTAHVYQHFME 167


>gi|91788799|ref|YP_549751.1| exonuclease I [Polaromonas sp. JS666]
 gi|91698024|gb|ABE44853.1| Exodeoxyribonuclease I subunit C [Polaromonas sp. JS666]
          Length = 480

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 26/196 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET GL+++ DR  +   +    + ++      ++  P N     P +  + GIT +  
Sbjct: 10  DYETFGLNTRRDRPSQFAGIRTDAELNEVGEPLMLYCQPANDYLPDPASCLITGITPQLC 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L+      +  ++      E     + +N  +FD         R   DP           
Sbjct: 70  LERGIPEHAFAAKIEQLLAEPGTIGVGYNTIRFDDEVTRYLFWRNLIDPYAREWQNDCGR 129

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              +D + +A    P                L  L +  G+   H + H AL D      
Sbjct: 130 WDLLDVVRMAYALRPEGIVWPTKEDGKPSFKLEDLARANGLL--HEAAHDALSDVRAT-I 186

Query: 170 VYIKMMVGGSQINFGF 185
              +++       F F
Sbjct: 187 ALARLIRKAQPKLFDF 202


>gi|42784095|ref|NP_981342.1| sporulation inhibitor KapD [Bacillus cereus ATCC 10987]
 gi|206976439|ref|ZP_03237346.1| sporulation inhibitor KapD [Bacillus cereus H3081.97]
 gi|217962377|ref|YP_002340949.1| sporulation inhibitor KapD [Bacillus cereus AH187]
 gi|222098364|ref|YP_002532422.1| sporulation inhibitor kapd [Bacillus cereus Q1]
 gi|229141628|ref|ZP_04270159.1| Sporulation inhibitor KapD [Bacillus cereus BDRD-ST26]
 gi|229199060|ref|ZP_04325743.1| Sporulation inhibitor KapD [Bacillus cereus m1293]
 gi|42740026|gb|AAS43950.1| sporulation inhibitor KapD [Bacillus cereus ATCC 10987]
 gi|206745363|gb|EDZ56763.1| sporulation inhibitor KapD [Bacillus cereus H3081.97]
 gi|217065516|gb|ACJ79766.1| sporulation inhibitor KapD [Bacillus cereus AH187]
 gi|221242423|gb|ACM15133.1| sporulation inhibitor KapD [Bacillus cereus Q1]
 gi|228584331|gb|EEK42466.1| Sporulation inhibitor KapD [Bacillus cereus m1293]
 gi|228641826|gb|EEK98126.1| Sporulation inhibitor KapD [Bacillus cereus BDRD-ST26]
 gi|324328790|gb|ADY24050.1| sporulation inhibitor KapD [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 207

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 20/189 (10%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            N+ + +  D E T         G   +   IIE+G V ++   K   T+   + P    
Sbjct: 1   MNEQQFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSAHVRPKTFP 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +    K  GI  E +    SF  +  +  ++        +      D+  +    ++ 
Sbjct: 57  SLTDRCKKFLGIKQEVVDKGISFPELVEKLAEYEKRCKPTIVTW-GNMDMKVLKHNCEKA 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             D     +  D     ++     RN   L    + YG  +     H AL D+    +++
Sbjct: 116 GVDFPFQGQCRDLSLEYKKFF-GERNQTGLWKAIEAYG-KVGTGKHHCALDDAMTTYNIF 173

Query: 172 IKMMVGGSQ 180
            K++    +
Sbjct: 174 -KLVEKDKE 181


>gi|322829251|gb|EFZ32718.1| hypothetical protein TCSYLVIO_929 [Trypanosoma cruzi]
          Length = 380

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 71/223 (31%), Gaps = 33/223 (14%)

Query: 6   KMRKIVFDIE-----TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEA 59
             R   FD+E       G D   + IIE G       +     F   + P NGR+ S E 
Sbjct: 73  PFRLFTFDLEFSGPPVFGPDGPTEDIIEFGFYSPAKDTV----FSCLVNPTNGRRVSQEV 128

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFF---------NEQNAEWIAHNAKF--DVGFIN 107
             L  IT E L K+   F   + +  +             +N   +  +     DV  I 
Sbjct: 129 TALTNITQEMLEKEGLPFPEAWEKVMETLMTPEPQELPGAENRLLVLSHGGKLADVSLIK 188

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRND---------LNSLCKRYGITISHRSKH 158
             L+    +        DT    R  H               L  L +   I  +    H
Sbjct: 189 WTLEAHGLELPPALVFGDTFHFIRDAHRRRPVTPDKHPPSWALADLVQWLKIPPTL-PAH 247

Query: 159 GALLDSHLLSD-VYIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A  D+ +  D +Y  +   G +     +    RFF EE + V
Sbjct: 248 RAGNDAKMTWDALYHTLERYGDEDLTPREQLVSRFFDEEAREV 290


>gi|152988725|ref|YP_001350220.1| exonuclease I [Pseudomonas aeruginosa PA7]
 gi|150963883|gb|ABR85908.1| exodeoxyribonuclease I [Pseudomonas aeruginosa PA7]
          Length = 478

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 26/193 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG+D + DR ++I  +   +  ++      ++  P+      P A  + GIT + L
Sbjct: 9   DYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRL 68

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++  S +   +               +N+ +FD       L R   DP           
Sbjct: 69  AERGLSEADFMTRVHAQLAHPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    G  + H   H AL D      +
Sbjct: 129 WDLIDMVRTAYALRPEGIQWPEADGRVSLKLELLTAANG--LEHGQAHDALSDVRAT--I 184

Query: 171 YIKMMVGGSQINF 183
            +  ++   Q   
Sbjct: 185 ALARLIRQRQPRL 197


>gi|330503165|ref|YP_004380034.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina
           NK-01]
 gi|328917451|gb|AEB58282.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina
           NK-01]
          Length = 182

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 10/172 (5%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E T    G   +   IIEIGA  +         FQ  + P  R   +    +L 
Sbjct: 4   WLVIDLEATTDEGGWPMEEMEIIEIGASLVGVDGHERDHFQRIVKPQRRPCLTDFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINKDPLDPS 121
            IT   +        ++++F  +  +     +  ++   +D   +  E ++ + + L   
Sbjct: 64  HITQSDVDSAAPMPQVWAQFERWLTQHAPRLVGWSSWGDYDRRQLEQEWRQHHLNSLLSE 123

Query: 122 RIIDTL--SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                L  + A+ +       L+S  +  G+      +H AL D+   + + 
Sbjct: 124 VPHLNLKQAFAKARQLQRPIGLHSALQLAGMQF-QGQQHRALEDARNTARLL 174


>gi|319762823|ref|YP_004126760.1| exodeoxyribonuclease i [Alicycliphilus denitrificans BC]
 gi|330824902|ref|YP_004388205.1| exodeoxyribonuclease I [Alicycliphilus denitrificans K601]
 gi|317117384|gb|ADU99872.1| Exodeoxyribonuclease I [Alicycliphilus denitrificans BC]
 gi|329310274|gb|AEB84689.1| Exodeoxyribonuclease I [Alicycliphilus denitrificans K601]
          Length = 478

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 74/222 (33%), Gaps = 30/222 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G D++ DR  +  A+      ++      ++  P N     P++  + GIT +  
Sbjct: 8   DYETFGTDTRRDRPAQFAAIRTDAQLNEIGEPLMLYCRPANDYLPDPQSCLITGITPQLC 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           L+         +             + +N  +FD       F    +    ++  +    
Sbjct: 68  LEKGVPEHQFAARIEAELALPGTIGVGYNTIRFDDEITRFMFWRNLMDPYAREWQNQCGR 127

Query: 124 IDTLSIARRKH---PSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            D L + R  +   P               L +L K  G  ++H + H AL D       
Sbjct: 128 WDLLDVVRLAYALRPDGIEWPVADGKTSFRLENLTKANG--LAHEAAHDALSDVRAT-IA 184

Query: 171 YIKMMVGGSQINFGFKTN---EDRFFKEEKKTVPNISLLKRD 209
             +++   +   F F      +DR   E +  +P  +   R 
Sbjct: 185 LARLVRARNPRLFDFALGLRKKDRVAAELR--LPATAQTARP 224


>gi|72386559|ref|XP_843704.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62175749|gb|AAX69877.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70800236|gb|AAZ10145.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 397

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 79/223 (35%), Gaps = 33/223 (14%)

Query: 6   KMRKIVFDIETTGL-----DSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEA 59
             R   FD+E TG      D   + I+E G          ++ F   + P NGR  SPE 
Sbjct: 84  PFRLFTFDLEFTGPPVFGPDGPTEDIMEFGFYSPA----HDKVFSCLVRPSNGRCVSPEV 139

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFFN----------EQNAEWIAHNAKF-DVGFIN 107
             L  IT + L +D   F   +++  DF N          E+    ++H  K  DV  I 
Sbjct: 140 TTLTHITQKMLEEDGLPFRDAWAKVLDFLNTPEPQELPGAEKRLLVLSHGGKLADVSLIK 199

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN---------SLCKRYGITISHRSKH 158
             L+    +        DT  + R  H      L+          L +   I  +    H
Sbjct: 200 WTLEASGMELPSNIIFGDTFHLIRDAHRRRPVTLDKHPPTWGLSDLVQWLRIPPTL-PAH 258

Query: 159 GALLDSHLLSD-VYIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A  D+ +  D +Y  +   G +     +    RFF  E K V
Sbjct: 259 RAGNDAKMTWDALYHTLERYGDEDLTPREQLVSRFFDVEAKQV 301


>gi|300717468|ref|YP_003742271.1| exodeoxyribonuclease I [Erwinia billingiae Eb661]
 gi|299063304|emb|CAX60424.1| Exodeoxyribonuclease I [Erwinia billingiae Eb661]
          Length = 475

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 63/192 (32%), Gaps = 29/192 (15%)

Query: 2   IRKNKMRKIVF--DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           +++NK +      D ET G     DR  +   +   +D++        +  P       P
Sbjct: 1   MKENKPQPTFLFHDYETFGKSPSLDRPAQFAGIRTDMDFNIIGEPEVFYCQPADDYLPQP 60

Query: 58  EALKLHGITDEFLKDKPSFSSIF--SEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRIN 114
           EA+ + GIT + L      S           F+E N   + +N  +FD       L R  
Sbjct: 61  EAVMITGITPQ-LAKAKGISEAAFTKRIHALFSEPNTCIVGYNNVRFDDEVTRNLLYRNF 119

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   +          +D +       P                L  L K  G+  SH 
Sbjct: 120 YDPYGWAWQHGNSRWDLLDVMRACYALRPEGIAWPENDDGLPSFRLEHLTKANGV--SHE 177

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 178 NAHDAMSDVYAT 189


>gi|225374578|ref|ZP_03751799.1| hypothetical protein ROSEINA2194_00193 [Roseburia inulinivorans DSM
           16841]
 gi|225213577|gb|EEG95931.1| hypothetical protein ROSEINA2194_00193 [Roseburia inulinivorans DSM
           16841]
          Length = 574

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 17/225 (7%)

Query: 1   MIRKNKMR--KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R N      +VFD+ET GL SK   ++ I   +  D     + +  FL P        
Sbjct: 1   MKRMNTDPTEYVVFDVETNGLKSKQADLLSISFYKPDDG----KEYSKFL-PLELNRKIV 55

Query: 59  ALKLHGITDEFLKDKPSFSSI-FSEFWDFFNEQNAEWIAH-NAKFDVGFINAELQR---I 113
              ++GIT++ L    + + + F    + F  +    + +    FD  F++A ++R   +
Sbjct: 56  TTHINGITEQDLVGATALTQLEFDRIVEEFELEKRIILIYAGGNFDASFLSAYMKRHRIL 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             + L+       +  +R  H       ++LC  + +    ++ H    D  L   ++ K
Sbjct: 116 GFEKLNFYNFKKNIISSRFSH--GNITKDNLCSIFKVD-GVKTVHSGSNDCKLEWKLFEK 172

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
           M      +  G    ED  F+  +  +   SLL     L   +++
Sbjct: 173 MEGYFYLVTEG--NGEDNVFRLNEDYIIPASLLSSHPNLSYILSE 215


>gi|329894377|ref|ZP_08270247.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088]
 gi|328923173|gb|EGG30496.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088]
          Length = 177

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 17/180 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E TGLD+    ++ +G V+L        + +  L  +G      A  +H I D  L+
Sbjct: 2   VDCEMTGLDATKHELLSVGWVQLTQQCIDMHSAKHRLVKSGASVGQSAT-IHLIRDCELQ 60

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
              +   +  E     + +    + H+A  D+ F+N  ++     P  PS  +DTL   +
Sbjct: 61  MGHNIDDVLCELLT--DARGFLPVFHHASLDLAFLNGAVEHAFGAPWWPS-YVDTLLNEK 117

Query: 132 RKHPSSRND---------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           R   S R+          L    +RY +       H A++D+   +++ +  +  G  I+
Sbjct: 118 RL--SERHTEVPKSGALTLAQSRRRYNLP--DYQGHNAVVDAIATAELLLAQIKKGVTIS 173


>gi|229163892|ref|ZP_04291832.1| Sporulation inhibitor KapD [Bacillus cereus R309803]
 gi|228619513|gb|EEK76399.1| Sporulation inhibitor KapD [Bacillus cereus R309803]
          Length = 207

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 20/189 (10%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            ++ R +  D E T         G   +   IIE+G V ++   K   T+   + P    
Sbjct: 1   MDEQRFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSAHVRPKTFP 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +    K  GI  E +    SF  +  +  ++        +      D+  +    +  
Sbjct: 57  SLTDRCKKFLGIKQEVVDKGISFPELVEKLAEYEKRCKPTIVTW-GNMDMKVLKHNCEMA 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                   +  D     ++     RN   L    + YG  +     H AL D+    +++
Sbjct: 116 GVPFPFFGQCRDLSLEYKKFF-GERNQTGLWKAIEAYG-KVGTGKHHCALDDAMTTYNIF 173

Query: 172 IKMMVGGSQ 180
            K++    +
Sbjct: 174 -KLVEKDKE 181


>gi|213028896|ref|ZP_03343343.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 101

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 75  SFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--INKDPLDPSRIIDTLSI 129
           +  +IF        +        +AHNA FD  F+ A  +R  + ++P  P    DT ++
Sbjct: 1   ALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLKRNPFHPFVTFDTAAL 60

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +       +  L+  C   G+       H AL D+   + + +
Sbjct: 61  SGLAL--GQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLVL 101


>gi|192360953|ref|YP_001983097.1| exonuclease I [Cellvibrio japonicus Ueda107]
 gi|190687118|gb|ACE84796.1| exodeoxyribonuclease I [Cellvibrio japonicus Ueda107]
          Length = 497

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 57/178 (32%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITD-EF 69
           D ET G     DR ++   V   LD +       ++  P       PEA  + GIT  E 
Sbjct: 13  DYETWGESPAIDRPVQFAGVRTDLDLNILGEPLTIYARPAPDVLPKPEACLITGITPQEA 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
                S +   +             + +N+ +FD       L R   DP +         
Sbjct: 73  EAKGVSEADFIAAIHRELARPGTCGVGYNSIRFDDEVTRYTLYRNFYDPYEREWRNGNSR 132

Query: 124 ---IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLL 167
              ID L + R   P   +            L  L +     ISH + H AL D H  
Sbjct: 133 WDLIDVLRMTRALRPEGIHWPDYEDGTPCFKLERLTEV--NRISHEAAHDALSDVHAT 188


>gi|109521548|ref|YP_655977.1| gp136 [Mycobacterium phage Wildcat]
 gi|91981000|gb|ABE67716.1| gp136 [Mycobacterium phage Wildcat]
          Length = 171

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 69/185 (37%), Gaps = 36/185 (19%)

Query: 7   MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG---RKNSPEALKL 62
           MR  IV D+ETTGL   N  I+E+ A +L+    T+R                 P+A+ +
Sbjct: 1   MRHIIVVDVETTGL-GLNPTILEVAAKDLM----TDRVLSFIPNVPSSCWAGLDPQAMAI 55

Query: 63  HG----------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           +           +T    +D       ++E  D  +     +   N  FD   +      
Sbjct: 56  NRYFERGSWRDMLTPNETRDA------YAELRDMLD--GNTFAGSNPSFDSKLLAR---- 103

Query: 113 INKDPLDPSRIIDTLSIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            N       R++D  + A      +P     L+ + K  GI I    +HGAL D  L + 
Sbjct: 104 -NGAVTWHHRLLDLAAYAAGVLDLNPWELPGLDDVAKALGIPIP-EERHGALADVELTAQ 161

Query: 170 VYIKM 174
            +  +
Sbjct: 162 CFRTL 166


>gi|301612101|ref|XP_002935535.1| PREDICTED: three prime repair exonuclease 2-like [Xenopus
           (Silurana) tropicalis]
          Length = 230

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 77/195 (39%), Gaps = 35/195 (17%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVF----------LCPNGRK 54
            +  D+E TGL+    +I E+  V      L+  +T+++              + P  + 
Sbjct: 8   FVFLDLEATGLNYNLPKITELCLVAVHVSSLENPETDQSEVQLPRVLDKLCLCVDPK-KP 66

Query: 55  NSPEALKLHGITDEFLK--DKPSFS----SIFSEFWDFFNEQNAEWIAHNAKF-DVGFIN 107
            + EA  + G+++E L   +KP F+     +  EF +    Q    +AHN  F D   + 
Sbjct: 67  ITKEACNITGLSNEKLANCEKPCFNLNLVQLVKEFLNR-QAQPVCLVAHNGLFYDFPLLK 125

Query: 108 AELQRINKDPLDPSRIIDTLSIARRK---------HPSSRNDLNSLCKR-YGITISHRSK 157
           AE Q+ N++       +D+L   R+               + L  L +R +G        
Sbjct: 126 AEFQQQNEELPGSLLCLDSLKAFRQLSQQDRRHQEFTKGSHTLTELYRRSFGKEPID--S 183

Query: 158 HGALLDSHLLSDVYI 172
           H A  D   L  V++
Sbjct: 184 HYAEGDVLTLIKVFM 198


>gi|134046188|ref|YP_001097673.1| exonuclease, RNase T and DNA polymerase III [Methanococcus
           maripaludis C5]
 gi|132663813|gb|ABO35459.1| Exonuclease, RNase T and DNA polymerase III [Methanococcus
           maripaludis C5]
          Length = 189

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 25/150 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL+     I +I  +   D     +   ++     +   P+A  +HG++ E 
Sbjct: 3   VFLDTETTGLEPGQ--IAQISYIISDDDLNIQKAENIYFK--VKSMEPKAQSVHGLSIEK 58

Query: 70  LK---DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           L+   +  SF+   ++  D  N++    I HN  FD  F+N+E  R   +     +   T
Sbjct: 59  LESLSEGKSFADHSTQILDDINQK--ILICHNVPFDYKFLNSEFVRCGIEYDP--KKFCT 114

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156
           +           N   +LC   GI   +R 
Sbjct: 115 M-----------NHYTNLC---GIPNPYRP 130


>gi|126667153|ref|ZP_01738127.1| exonuclease I [Marinobacter sp. ELB17]
 gi|126628309|gb|EAZ98932.1| exonuclease I [Marinobacter sp. ELB17]
          Length = 507

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 75/224 (33%), Gaps = 31/224 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G+D  +DR  +   V    + +       +F  P       PEA  + GIT +  
Sbjct: 34  DYETFGVDPLHDRPCQFAGVRTDSELNIIEEPLVIFCRPADDYLPAPEACLITGITPQQA 93

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++    +   +     F++     + +N+ +FD       L R  +DP           
Sbjct: 94  TQEGYPEAEFITMINSAFSQPGTCVVGYNSLRFDDEVTRNTLYRNLRDPYGREWQNGNSR 153

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              ID + +A    P                L  L +  G  + H   H A+ D  + + 
Sbjct: 154 WDLIDVVRLAYTLRPEGIEWPLKPDGSPSFRLEDLARANG--LEHGQAHDAMSD--VTAT 209

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
           + +  ++   Q        E     + K+    +      KP+F
Sbjct: 210 LALARLIKERQPRL----FEFARANKSKQAARKMLDTSTRKPVF 249


>gi|260551423|ref|ZP_05825623.1| DNA polymerase III [Acinetobacter sp. RUH2624]
 gi|260405586|gb|EEW99078.1| DNA polymerase III [Acinetobacter sp. RUH2624]
          Length = 226

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 87/243 (35%), Gaps = 46/243 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVEL--LDYSKT---NRTF-QVFLCPNGRKNSPEAL 60
           M+ I+ D ET   +  N   IEI        +       +  F + + CP       EA+
Sbjct: 1   MKAIILDTET---NKLNGYPIEIAYAPFSLENGQLLVLKDEVFNRFYSCPE--PIDLEAM 55

Query: 61  KLHGITDEFLKDKPSFSSI-FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +H I +  ++ +PS  +    E  +F        + HN  +DV  +N         P  
Sbjct: 56  AVHNIIEADIEGQPSCETFRLPEGVEFI-------VGHNIDYDVKALNKC------GPAI 102

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLC-----KRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++ I TL++ R   P  + + L  L       R       R  H A  D +    + I 
Sbjct: 103 KAKTICTLALTRDVWPDLTSHKLAVLYYFVMSNREEARKHLRHAHSARADVYFTGIILIA 162

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNI---------SLLKRDKPLFT-RITKEELDE 223
           ++        G K     +   E   +P I          L +  +P  +  + KE+LD 
Sbjct: 163 LIE-----RLGIKDLNSLYLMSEAVRLPKIMTWGKHKGTPLKELPRPYISWLLNKEDLDP 217

Query: 224 HDK 226
           H +
Sbjct: 218 HLR 220


>gi|229062584|ref|ZP_04199894.1| Sporulation inhibitor KapD [Bacillus cereus AH603]
 gi|228716687|gb|EEL68383.1| Sporulation inhibitor KapD [Bacillus cereus AH603]
          Length = 207

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 20/189 (10%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            ++ R +  D E T         G   +   IIE+G V ++   K   T+   + P    
Sbjct: 1   MDEQRFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSSHVRPKTFP 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +    K  GI  E +    SF  +  +  ++        +      D+  +    +  
Sbjct: 57  SLTDRCKKFLGIKQEVVDKGVSFHELVEKLAEYEKRCKPTIVTW-GNMDMKVLKQNCEMA 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +     +  D     ++     RN   L    + YG        H AL D+    +++
Sbjct: 116 GVEFPFFGQCRDLSLEYKKFF-GERNQTGLWKAIEAYG-KAGTGKHHCALDDAMTTYNIF 173

Query: 172 IKMMVGGSQ 180
            K++    +
Sbjct: 174 -KLVEKDKE 181


>gi|322832303|ref|YP_004212330.1| Exodeoxyribonuclease I [Rahnella sp. Y9602]
 gi|321167504|gb|ADW73203.1| Exodeoxyribonuclease I [Rahnella sp. Y9602]
          Length = 475

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 70/214 (32%), Gaps = 27/214 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M  K +      D ET G +   DR  +   V    D++       ++  P+      PE
Sbjct: 1   MSDKPQKTFYFHDYETFGKNPALDRPAQFAGVRTDEDFNIIEEPLVIYCRPSDDYLPEPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A+ + GIT +  L+     +   ++    F+      + +N  +FD       L R   D
Sbjct: 61  AVMITGITPQVALERGLIEAEFTAQIHKAFSVPGTCIVGYNNIRFDDEVSRNILYRNFHD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L K  GI   H + 
Sbjct: 121 PYAYSWQNGNSRWDLLDVMRACYALRPEGINWPENDDGFPSFRLEHLTKANGIE--HENA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191
           H A+ D +    + +  +V  +Q        E R
Sbjct: 179 HDAMADVYAT--IAMAKLVKQAQPRLFSFLLEHR 210


>gi|261868004|ref|YP_003255926.1| exonuclease I [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413336|gb|ACX82707.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 475

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 65/193 (33%), Gaps = 25/193 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M+ KN     ++D E+ G++   DR  + G +    D++       ++          PE
Sbjct: 1   MMAKNDFSFFIYDYESFGVNPATDRPAQFGGIRTDEDFNIIGEPIVLYCKQTNDYLPAPE 60

Query: 59  ALKLHGITDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           A+ + GIT +   +K  +          +F          +N ++D         R   D
Sbjct: 61  AVLVTGITPQECNEKGLWEPEFAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P + S          +D +       P                L  L +  GI  +H S 
Sbjct: 121 PYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGI--AHDSA 178

Query: 158 HGALLDSHLLSDV 170
           H A+ D +   ++
Sbjct: 179 HDAMSDVYATIEM 191


>gi|229162370|ref|ZP_04290333.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           R309803]
 gi|228621054|gb|EEK77917.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           R309803]
          Length = 242

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 9/140 (6%)

Query: 39  KTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98
           K    F   + P G + +    KL GIT + L     F  I   F  F   +++ ++   
Sbjct: 2   KVIGEFSELVKP-GARLTRHTTKLTGITKKDLIGIEKFPQIIERFIQFIG-EDSIFVTWG 59

Query: 99  AKFDVGFINAELQRINKDPLDP--SRIIDT---LSIARRKHPSSRNDLNSLCKRYGITIS 153
            + D  F++ +      +       R  D    +  A  +       L    ++ G+   
Sbjct: 60  KE-DYRFLSHDCTLHGVECPCMKKERKFDLQKFVFQAYEELFEHTPSLQFAVEQLGLIWE 118

Query: 154 HRSKHGALLDSHLLSDVYIK 173
            +  H AL D+   +++ +K
Sbjct: 119 GKQ-HRALADAENTANILLK 137


>gi|62079013|ref|NP_001014165.1| 3'-5' exoribonuclease 1 [Rattus norvegicus]
 gi|78098993|sp|Q5FVR4|ERI1_RAT RecName: Full=3'-5' exoribonuclease 1; AltName: Full=Histone mRNA
           3'-exonuclease 1
 gi|58476450|gb|AAH89828.1| Three prime histone mRNA exonuclease 1 [Rattus norvegicus]
 gi|149057952|gb|EDM09195.1| three prime histone mRNA exonuclease 1 [Rattus norvegicus]
          Length = 345

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 77/218 (35%), Gaps = 20/218 (9%)

Query: 9   KIVFDIETTG--LDSKN--DRIIEIGAVELLDYS-KTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T    +       IIE   V L  +S +   TFQ ++ P    + S   + L
Sbjct: 126 ICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHSLEIEDTFQQYVRPEVNSQLSEFCIGL 185

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGF---INAELQRIN 114
            GIT + +    +F  +  +  ++        +    I  +  +D+     I  +L R+ 
Sbjct: 186 TGITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLNIQCQLSRLK 245

Query: 115 KDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                     I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++
Sbjct: 246 YPSFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR-PHSGLDDSKNIARIAVR 304

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
           M+    Q     + NE     +      ++ +     P
Sbjct: 305 ML----QDGCELRINEKLHGGQLMSVSSSLPVEGAPAP 338


>gi|30022952|ref|NP_834583.1| sporulation inhibitor KapD [Bacillus cereus ATCC 14579]
 gi|75760253|ref|ZP_00740306.1| Exonuclease KapD [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218234761|ref|YP_002369702.1| sporulation inhibitor KapD [Bacillus cereus B4264]
 gi|218900061|ref|YP_002448472.1| sporulation inhibitor KapD [Bacillus cereus G9842]
 gi|228903410|ref|ZP_04067538.1| Sporulation inhibitor KapD [Bacillus thuringiensis IBL 4222]
 gi|228910746|ref|ZP_04074555.1| Sporulation inhibitor KapD [Bacillus thuringiensis IBL 200]
 gi|228923644|ref|ZP_04086923.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228961163|ref|ZP_04122785.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228968015|ref|ZP_04129023.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|229048603|ref|ZP_04194161.1| Sporulation inhibitor KapD [Bacillus cereus AH676]
 gi|229112353|ref|ZP_04241891.1| Sporulation inhibitor KapD [Bacillus cereus Rock1-15]
 gi|229130170|ref|ZP_04259130.1| Sporulation inhibitor KapD [Bacillus cereus BDRD-Cer4]
 gi|229147462|ref|ZP_04275810.1| Sporulation inhibitor KapD [Bacillus cereus BDRD-ST24]
 gi|229153098|ref|ZP_04281278.1| Sporulation inhibitor KapD [Bacillus cereus m1550]
 gi|296505353|ref|YP_003667053.1| sporulation inhibitor KapD [Bacillus thuringiensis BMB171]
 gi|29898511|gb|AAP11784.1| Exonuclease KapD [Bacillus cereus ATCC 14579]
 gi|74492248|gb|EAO55411.1| Exonuclease KapD [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218162718|gb|ACK62710.1| sporulation inhibitor KapD [Bacillus cereus B4264]
 gi|218544233|gb|ACK96627.1| sporulation inhibitor KapD [Bacillus cereus G9842]
 gi|228630364|gb|EEK87013.1| Sporulation inhibitor KapD [Bacillus cereus m1550]
 gi|228636007|gb|EEK92489.1| Sporulation inhibitor KapD [Bacillus cereus BDRD-ST24]
 gi|228653284|gb|EEL09162.1| Sporulation inhibitor KapD [Bacillus cereus BDRD-Cer4]
 gi|228671001|gb|EEL26307.1| Sporulation inhibitor KapD [Bacillus cereus Rock1-15]
 gi|228722722|gb|EEL74109.1| Sporulation inhibitor KapD [Bacillus cereus AH676]
 gi|228791686|gb|EEM39280.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228798510|gb|EEM45501.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228836005|gb|EEM81367.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228848697|gb|EEM93542.1| Sporulation inhibitor KapD [Bacillus thuringiensis IBL 200]
 gi|228856231|gb|EEN00763.1| Sporulation inhibitor KapD [Bacillus thuringiensis IBL 4222]
 gi|296326405|gb|ADH09333.1| sporulation inhibitor KapD [Bacillus thuringiensis BMB171]
          Length = 207

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 20/189 (10%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            ++ R +  D E T         G   +   IIE+G V  +   K   T+   + P    
Sbjct: 1   MDEQRFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLV-SVAGCKVEDTYSSHVRPKTFP 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +    K  GI  E +    SF  +  +  ++  +     +      D+  +    +  
Sbjct: 57  SLTDRCKKFLGIKQEVVDKGISFPELVKKLAEYETKCKPTIVTW-GNMDMKVLKHNCEMA 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                   +  D     ++     RN   L    + YG  +     H AL D+    +++
Sbjct: 116 GIAFPFFGQCRDLSLEYKKFF-GERNQTGLWKAIEAYG-KVGTGKHHCALDDAMTTYNIF 173

Query: 172 IKMMVGGSQ 180
            K++    +
Sbjct: 174 -KLVEKDKE 181


>gi|229591814|ref|YP_002873933.1| hypothetical protein PFLU4398 [Pseudomonas fluorescens SBW25]
 gi|229363680|emb|CAY51043.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 180

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 10/172 (5%)

Query: 9   KIVFDIETT---GLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            ++ D+E T   G     +  +IEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLIIDLEATTDEGGWPVTEMEVIEIGASLVNRQGRELDHFQRFVRPLRRPLLTPFCRQLT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPS 121
            IT   +      + ++  F  +  + +A     A    +D   +  E QR         
Sbjct: 64  HITQANMDGAAPITEVWPLFERWLGQHHARLEGWASWGDYDRAQLELEWQRHGLASALAH 123

Query: 122 RIIDTL--SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                L    A+ +       LN   +  G+   H  +H AL D+   + + 
Sbjct: 124 TPHVNLKQRFAKARRLDKPLGLNGALQLAGMQF-HGQQHRALEDARNTARLL 174


>gi|86139894|ref|ZP_01058460.1| exonuclease I [Roseobacter sp. MED193]
 gi|85823523|gb|EAQ43732.1| exonuclease I [Roseobacter sp. MED193]
          Length = 459

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 86/234 (36%), Gaps = 34/234 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNR-TFQVFLCPNGRKNSPEALKLHG 64
           M  + +D+ETTG+  + D+ ++  A+    ++ + +R   +  L P+    SP+AL +  
Sbjct: 1   MDFVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDRVNIRCRLAPHILP-SPQALVVTR 59

Query: 65  ITDEFLKDK--PSFSSIFSEFWDFF-NEQNAEWIAHN-AKFDVGFINAELQR-----INK 115
           +T + L D   PS      +  +F      A W+ +N  KFD   +     +     I  
Sbjct: 60  VTPDQLIDPSLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQNLSPNIYA 119

Query: 116 DPLDPSRIIDTL---SIARRKHPS-----------SRNDLNSLCKRYGITISHRSKHGAL 161
              + +   D L     A  +HP                L+ L    G   +  + H AL
Sbjct: 120 TQFNGNTRFDILPAVYAAYVRHPGLLVWPTDDTGRRSFKLDRLAPANG--FNAHNAHDAL 177

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            D      ++I  ++         +  ++      +  + +     R   L TR
Sbjct: 178 GDVEAT--IHIARLIATRSPALWSELIDNAHKARVQAKLESF----RPYELVTR 225


>gi|146307535|ref|YP_001188000.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina
           ymp]
 gi|145575736|gb|ABP85268.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina
           ymp]
          Length = 182

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 63/172 (36%), Gaps = 10/172 (5%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E T    G   +   IIEIGA  +         FQ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTDEGGWPLEEMEIIEIGASLVGADGHERDHFQRFVKPQRRPCLTDFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINKDPLDPS 121
            I    +    S   ++++   +  +     +  ++   +D   +  E ++     L   
Sbjct: 64  HIAQADVDSAGSLPQVWAQLERWLEQHAPRLVGWSSWGDYDRRQLEQEWRQHQLTSLLQG 123

Query: 122 RIIDTL--SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                L  + A+ +       L+S  +  G+     ++H AL D+   + + 
Sbjct: 124 TPHLNLKQAFAKARQLPRPVGLHSALQLAGLQF-QGAQHRALTDARNTARLL 174


>gi|91223947|ref|ZP_01259211.1| exodeoxyribonuclease I [Vibrio alginolyticus 12G01]
 gi|91191439|gb|EAS77704.1| exodeoxyribonuclease I [Vibrio alginolyticus 12G01]
          Length = 473

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 67/204 (32%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKNS-PE 58
           M + N+     FD ET G +   DR  +  GA    +++       ++  P       PE
Sbjct: 1   MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGARTDENFNIIGEPLVMYCQPPADYLPSPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +  +++  S     ++        N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKTVQEGLSEPEFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVVATIEMAKKVKAAQPKL 202


>gi|184158545|ref|YP_001846884.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii ACICU]
 gi|183210139|gb|ACC57537.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU]
          Length = 226

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 87/243 (35%), Gaps = 46/243 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVEL--LDYSKT---NRTF-QVFLCPNGRKNSPEAL 60
           M+ I+ D ET   +  N   IEI        +       +  F + + CP       EA+
Sbjct: 1   MKAIILDTET---NKLNGYPIEIAYAPFSLENGQLLVHKDEVFNRFYSCPE--PIDLEAM 55

Query: 61  KLHGITDEFLKDKPSFSSI-FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            +H I +  ++ +PS  S    E  +F        + HN  +D+  +N         P  
Sbjct: 56  AVHNIIETDIEGQPSCESFRLPEGVEFI-------VGHNIDYDIKALNKC------GPAI 102

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLC-----KRYGITISHRSKHGALLDSHLLSDVYIK 173
             + I TL++AR   P  + + L  L       R       R  H A  D +    + I 
Sbjct: 103 KVKTICTLALARDVWPDLTSHKLAVLYYFVMSNREEARKHLRHAHSARADVYFTGIILIA 162

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNI---------SLLKRDKPLFT-RITKEELDE 223
           ++        G K     +   E   +P I          L +  +P  +  + KE+LD 
Sbjct: 163 LIE-----RLGIKDLNSLYLMSEAVRLPKIMTWGKHKGTPLKELPRPYISWLLNKEDLDP 217

Query: 224 HDK 226
           H +
Sbjct: 218 HLR 220


>gi|313669465|ref|YP_004049891.1| exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
 gi|313156662|gb|ADR35338.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 174

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 66/181 (36%), Gaps = 28/181 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           I+ D ET    +    +IE+ A  ++  +       TF  +   +  + +P AL +H ++
Sbjct: 2   IILDFETN--SANIHDVIEVAAFRIKREEGVYVIADTFHRYYF-SEYEVNPYALAVHKLS 58

Query: 67  D---EFLKDKPSFSSIFSE---FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
               E L+    ++  F+E   F +F        IAHN  F++  +         + +  
Sbjct: 59  PQRIERLRANVDYAEHFAEDSEFVEFCQGA-KTLIAHNITFELRHL--------GELVRF 109

Query: 121 SRIIDTLSIARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +   T+   ++       +       L   C+ Y I       H A+ D     +V   
Sbjct: 110 EKHFCTMKSNKKIVGAINIRGSLKNPKLLETCRHYQIEFDEEQYHSAVYDVTKTLEVLNN 169

Query: 174 M 174
           M
Sbjct: 170 M 170


>gi|240142475|ref|YP_002966986.1| hypothetical protein MexAM1_META2p0806 [Methylobacterium extorquens
           AM1]
 gi|240012420|gb|ACS43645.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 194

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 61/182 (33%), Gaps = 12/182 (6%)

Query: 8   RKIVFDIETT---GLDSKNDR--IIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +  D E T   G      R  I+EIG VE  +   +  R     + P   + S    +
Sbjct: 8   RILAIDTEWTCWEGGAPPGMRSEILEIGIVEADVATLEILREESWLVRPAYSEVSGYCER 67

Query: 62  LHGIT-DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLD 119
           L GI  DE  +       +       F       ++     D+G I AE +    + P  
Sbjct: 68  LTGIAGDEARRFGRPLPEVMRTLTKQFGPSRKALVS--WGDDLGGIEAECRAFGVENPFR 125

Query: 120 PSRIID-TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               +D  L  A       R  L++     G+    R +H AL D+     +++      
Sbjct: 126 RELAVDFGLVHALSAGCRERPSLDAALAAEGVPFEGR-RHRALPDALATMRLFLAFAARQ 184

Query: 179 SQ 180
             
Sbjct: 185 RP 186


>gi|57530089|ref|NP_001006450.1| 3'-5' exoribonuclease 1 [Gallus gallus]
 gi|53130526|emb|CAG31592.1| hypothetical protein RCJMB04_8i1 [Gallus gallus]
          Length = 327

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 80/222 (36%), Gaps = 20/222 (9%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKL 62
             V D E T   G   +    IIE   V L  +  +   TFQ ++ P      S   + L
Sbjct: 108 ICVVDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVKPEINPKLSEFCVGL 167

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGFINAELQRINK-- 115
            GIT + +    +F  +     D+        + +  +  +  +D+        R+++  
Sbjct: 168 TGITQDIVDKADTFPQVLQNVVDWMRQRELGTKYSYCMLTDGSWDMSKFLNIQCRVSRIK 227

Query: 116 DPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            P    + I+        +   RN   L  + ++ G++   R  H  L DS  ++ + I+
Sbjct: 228 HPSFAKKWINIRKSYGNFYKVPRNQTKLMIMLEKLGMSYDGR-PHSGLDDSKNIARIAIR 286

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
           M+  G Q+    + NE     +      +  L     P   R
Sbjct: 287 MLQDGCQL----RVNEKMHAGQLMTVSSSTPLEGAPAPQMPR 324


>gi|163942626|ref|YP_001647510.1| sporulation inhibitor KapD [Bacillus weihenstephanensis KBAB4]
 gi|229014099|ref|ZP_04171221.1| Sporulation inhibitor KapD [Bacillus mycoides DSM 2048]
 gi|229135740|ref|ZP_04264512.1| Sporulation inhibitor KapD [Bacillus cereus BDRD-ST196]
 gi|163864823|gb|ABY45882.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           weihenstephanensis KBAB4]
 gi|228647706|gb|EEL03769.1| Sporulation inhibitor KapD [Bacillus cereus BDRD-ST196]
 gi|228747207|gb|EEL97088.1| Sporulation inhibitor KapD [Bacillus mycoides DSM 2048]
          Length = 207

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 20/189 (10%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            ++ R +  D E T         G   +   IIE+G V ++   K   T+   + P    
Sbjct: 1   MDEQRFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSSHIRPKTFP 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +    K  GI  E +    SF  +  +  ++        +      D+  +    +  
Sbjct: 57  SLTDRCKKFLGIKQEVVDKGISFHELVEKLAEYEKSGKPTIVTW-GNMDMKVLKHNCEMA 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +     +  D     ++     RN   L    + YG        H AL D+    +++
Sbjct: 116 GVEFPFFGQCRDLSLEYKKFF-GERNQTGLWKAIEAYG-KAGTGKHHCALDDAMTTYNIF 173

Query: 172 IKMMVGGSQ 180
            K++    +
Sbjct: 174 -KLVEKDKE 181


>gi|328554793|gb|AEB25285.1| sporulation inhibitor KapD [Bacillus amyloliquefaciens TA208]
 gi|328913150|gb|AEB64746.1| putative exoribonuclease (3'-5') [Bacillus amyloliquefaciens LL3]
          Length = 232

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 14/187 (7%)

Query: 3   RKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-N 55
           + ++   ++ D E T  D K         IIE G V+ +D  +   TF  ++ P      
Sbjct: 27  KVDQRSLLIIDFEFTMPDGKYSPQNFFPEIIEAGIVKTVDD-EVAETFSSYIKPKKFPKL 85

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           +        IT E +    +F+    +  +   ++N   +      D+  +       N 
Sbjct: 86  TKRCKTFLNITQEDVDGGITFNEFIRKLNELDPDKNCTIVTW-GNMDMKVLKQNCM-FNH 143

Query: 116 DPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            P      +  LS+  +     R    L    + YG      + H AL D+     ++ K
Sbjct: 144 IPFPFKGELRDLSLEYKNFFGDRTLTGLWKAAEEYG-DKGTGTHHKALDDAMTTHKLF-K 201

Query: 174 MMVGGSQ 180
           ++    Q
Sbjct: 202 LVERDKQ 208


>gi|296103672|ref|YP_003613818.1| exonuclease I [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295058131|gb|ADF62869.1| exonuclease I [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 474

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 56/178 (31%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G     DR  +  A+   D ++        +  P       P A+ + GIT +  
Sbjct: 14  DYETFGTHPALDRPAQFAAIRTDDEFNIIGEPEVFYCKPADDYLPQPGAVMVTGITPQEA 73

Query: 71  KDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           ++K  + +       D F   +   + +N  +FD         R   DP   S       
Sbjct: 74  REKGVNEAEFARRIHDLFTVPHTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSWQNRNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L +  GI   H + H A+ D +  
Sbjct: 134 WDLLDIMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIE--HSNAHDAMADVYAT 189


>gi|270262717|ref|ZP_06190988.1| exonuclease I [Serratia odorifera 4Rx13]
 gi|270043401|gb|EFA16494.1| exonuclease I [Serratia odorifera 4Rx13]
          Length = 475

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 65/206 (31%), Gaps = 27/206 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPE 58
           M  K      + D ET G     DR  +   V   +D++       ++  P +     PE
Sbjct: 1   MSSKAPATFYIHDYETFGKSPSMDRPAQFAGVRTDMDFNIIEEPLVIYCKPADDYLPDPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A+ + GIT +  L    + +    E    F+      + +N  +FD         R   D
Sbjct: 61  AVMITGITPQLALAKGINEADFAREIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRSFYD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L +  G+   H   
Sbjct: 121 PYAYSWQNGNSRWDLLDVMRACYALRPEGIVWPENEDGFPSFRLEHLTRANGVE--HEHA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQINF 183
           H A+ D +    + +  +V  +Q   
Sbjct: 179 HDAMSDVYAT--IAMAKLVKQAQPRL 202


>gi|238749982|ref|ZP_04611486.1| Exodeoxyribonuclease I [Yersinia rohdei ATCC 43380]
 gi|238711911|gb|EEQ04125.1| Exodeoxyribonuclease I [Yersinia rohdei ATCC 43380]
          Length = 476

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 68/207 (32%), Gaps = 28/207 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           M  KNK     V D ET G     DR  +   V   LD++       ++  P       P
Sbjct: 1   MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCTPADDYLPQP 60

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  L +  + +    +    FN      + +N  +FD         R   
Sbjct: 61  EAVMITGITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P+               L  L K  G+   H  
Sbjct: 121 DPYAYSWQGGNSRWDLLDVMRACYALRPAGIVWPENEDGLPSFKLEHLTKANGVE--HLQ 178

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINF 183
            H A+ D H    + +  +V  +Q   
Sbjct: 179 AHDAMSDVHAT--IAMAKLVKQAQPRL 203


>gi|229076290|ref|ZP_04209255.1| Sporulation inhibitor KapD [Bacillus cereus Rock4-18]
 gi|229099371|ref|ZP_04230301.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-29]
 gi|229105531|ref|ZP_04236165.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-28]
 gi|229118383|ref|ZP_04247737.1| Sporulation inhibitor KapD [Bacillus cereus Rock1-3]
 gi|228664953|gb|EEL20441.1| Sporulation inhibitor KapD [Bacillus cereus Rock1-3]
 gi|228677801|gb|EEL32044.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-28]
 gi|228683995|gb|EEL37943.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-29]
 gi|228706725|gb|EEL58933.1| Sporulation inhibitor KapD [Bacillus cereus Rock4-18]
          Length = 207

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 20/189 (10%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            ++ R +  D E T         G   +   IIE+G V ++   K   T+   + P    
Sbjct: 1   MDEQRFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSSHVRPKTFP 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +    K  GI  E +    SF  +  +  ++        +      D+  +    +  
Sbjct: 57  SLTDRCKKFLGIKQEIVDKGISFPELIDKLAEYEKRCKPTIVTW-GNMDMKVLKHNCEMS 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                   +  D     ++     RN   L    + YG  +     H AL D+    +++
Sbjct: 116 GVAFPFFGQCRDLSLEYKKFF-GERNQTGLWKAIEAYG-KVGTGKHHCALDDAMTTYNIF 173

Query: 172 IKMMVGGSQ 180
            K++    +
Sbjct: 174 -KLVEKDKE 181


>gi|213970280|ref|ZP_03398410.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato T1]
 gi|301382938|ref|ZP_07231356.1| exonuclease I [Pseudomonas syringae pv. tomato Max13]
 gi|302063791|ref|ZP_07255332.1| exonuclease I [Pseudomonas syringae pv. tomato K40]
 gi|302133521|ref|ZP_07259511.1| exonuclease I [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213924952|gb|EEB58517.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato T1]
 gi|331018014|gb|EGH98070.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 476

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 69/226 (30%), Gaps = 26/226 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ +NDR +++  +    + ++      ++  P+      P A  + GIT   L
Sbjct: 9   DYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVITGITPATL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +K        +               +N  +FD         R   DP           
Sbjct: 69  AEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    GI   H   H AL D      +
Sbjct: 129 WDLIDVVRAAYALRPEGIVWPEQDGRVTLKLERLTAANGID--HGQAHDALSDVRAT--I 184

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            +  ++   Q          R  ++ ++ +  +  L      F+  
Sbjct: 185 ALARLIREKQPRLYDYLFTLRTKQKVQEHIHLMKPLVHISGRFSAA 230


>gi|163801030|ref|ZP_02194930.1| exodeoxyribonuclease I [Vibrio sp. AND4]
 gi|159175379|gb|EDP60176.1| exodeoxyribonuclease I [Vibrio sp. AND4]
          Length = 473

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 67/204 (32%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M   N+     FD ET G +   DR  +   V    +++       ++  P       PE
Sbjct: 1   MHPDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +  +++  S     ++     ++ N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKAMQEGLSEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIEMAKKVKAAQPKL 202


>gi|28871453|ref|NP_794072.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28854704|gb|AAO57767.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 476

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 69/226 (30%), Gaps = 26/226 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ +NDR +++  +    + ++      ++  P+      P A  + GIT   L
Sbjct: 9   DYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVITGITPATL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +K        +               +N  +FD         R   DP           
Sbjct: 69  AEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    GI   H   H AL D      +
Sbjct: 129 WDLIDVVRAAYALRPEGIVWPEQDGRVTLKLERLTAANGID--HGQAHDALSDVRAT--I 184

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            +  ++   Q          R  ++ ++ +  +  L      F+  
Sbjct: 185 ALARLIREKQPRLYDYLFTLRTKQKVQEHIHLMKPLVHISGRFSAA 230


>gi|302608296|emb|CBW44754.1| Exodeoxyribonuclease I, Exonuclease I, DNA
           deoxyribophosphodiesterase, dRPase [Marinobacter
           hydrocarbonoclasticus]
          Length = 482

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDE-F 69
           D ET G+D  +DR  +   V    D +       ++  P +    SPEA  + GIT +  
Sbjct: 9   DYETFGVDPVHDRPSQFAGVRTDADLNIIEDPLVIYCKPADDYLPSPEACLITGITPQKA 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------DP 120
           L+D    +   ++  + F++     + +N+ +FD       L R  +DP           
Sbjct: 69  LEDGFPEAEFIAQINEAFSQPGTCAVGYNSLRFDDEVTRHTLYRNLRDPYAREWQNGNSR 128

Query: 121 SRIIDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLL 167
             IID + +     P   +            L  L    GI  +H + H A+ D    
Sbjct: 129 WDIIDMVRLTYALRPEGIHWPRKEDGSPSFRLEELTVANGI--AHEAAHDAMSDVLAT 184


>gi|333027435|ref|ZP_08455499.1| putative exonuclease [Streptomyces sp. Tu6071]
 gi|332747287|gb|EGJ77728.1| putative exonuclease [Streptomyces sp. Tu6071]
          Length = 219

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 16/136 (11%)

Query: 34  LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQ-- 90
           +    + + T    + P G    PE  ++HGI D     +     +   E      +   
Sbjct: 1   MRGGGRPDATMSWLINP-GVPIPPETTEIHGIDDAKATAEGADPKAALDEIAGRLAQALL 59

Query: 91  -NAEWIAHNAKFDVGFINAELQRIN-------KDPLDPSRIIDTLSIARRKHP----SSR 138
                +A N  +D   +  EL+R            L    ++D+  I ++       + R
Sbjct: 60  YGMPVVAFNLAYDWTVLTRELERHGLPSMADRLPGLSAPALVDSHVIDKQVDKYVRGTGR 119

Query: 139 NDLNSLCKRYGITISH 154
             L   C+RYG+ +  
Sbjct: 120 RKLQPTCERYGVVLED 135


>gi|330877835|gb|EGH11984.1| exonuclease I [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 476

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 69/226 (30%), Gaps = 26/226 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ +NDR +++  +    + ++      ++  P+      P A  + GIT   L
Sbjct: 9   DYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVITGITPATL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +K        +               +N  +FD         R   DP           
Sbjct: 69  AEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    GI   H   H AL D      +
Sbjct: 129 WDLIDVVRAAYALRPEGIVWPEQDGRVTLKLERLTAANGID--HGQAHDALSDVRAT--I 184

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            +  ++   Q          R  ++ ++ +  +  L      F+  
Sbjct: 185 ALARLIREKQPRLYDYLFTLRTKQKVQEHIHLMKPLVHISGRFSAA 230


>gi|288942185|ref|YP_003444425.1| Exodeoxyribonuclease I [Allochromatium vinosum DSM 180]
 gi|288897557|gb|ADC63393.1| Exodeoxyribonuclease I [Allochromatium vinosum DSM 180]
          Length = 477

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 55/178 (30%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G D + DR  +   V    D ++      +F  P+      P+A  + G+T + +
Sbjct: 9   DYETWGADPRRDRPCQFAGVRTDADLNEVGDPLVLFCRPSDDLLPHPDACLVTGLTPQRV 68

Query: 71  -KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++    +          +      + +N+ +FD         R   DP           
Sbjct: 69  AREGVVEAEFARAIHAELSRPGTCGVGYNSLRFDDEVTRHLFYRNFFDPYAREWRSGNSR 128

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              ID L +A    P                L  L    GI   H   H AL D    
Sbjct: 129 WDLIDVLRLAHALRPEGIEWPLNDEGTTSFRLEQLTVANGID--HGQAHDALADVRAT 184


>gi|54301691|ref|YP_131684.1| hypothetical protein PBPRB0011 [Photobacterium profundum SS9]
 gi|46915111|emb|CAG21884.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 191

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 10/170 (5%)

Query: 8   RKIVFDIETT----GLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R + FD+E      G D K   IIEIG  EL LD  +  R  Q ++ P   + S    +L
Sbjct: 10  RIVCFDLEMCCWNDGRDPKTGEIIEIGLAELDLDTGEIVRRTQHYVKPEHDEISEFCTEL 69

Query: 63  HGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDP 120
            GI  + + K+    + I       F  ++  + A     D   ++AE        P   
Sbjct: 70  TGIKPQVIHKNGKPLAEILRSMESKFGGKHKIYAA--WGHDDRILHAECAAKGLKVPFTE 127

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              +  +   +R     R    +  +  G+    R  H   +D++ L+ +
Sbjct: 128 YINLAMIFRLQRHVKKKRCGQRAAMEIAGLEWEGRQ-HSGYVDAYNLARL 176


>gi|330966612|gb|EGH66872.1| exonuclease I [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 431

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 69/226 (30%), Gaps = 26/226 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ +NDR +++  +    + ++      ++  P+      P A  + GIT   L
Sbjct: 9   DYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVITGITPATL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +K        +               +N  +FD         R   DP           
Sbjct: 69  AEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    GI   H   H AL D      +
Sbjct: 129 WDLIDVVRAAYALRPEGIVWPEQDGRVTLKLERLTAANGID--HGQAHDALSDVRAT--I 184

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            +  ++   Q          R  ++ +K +  +  L      F+  
Sbjct: 185 ALARLIREKQPRLYDYLFTLRTKQKVQKHIHLMKPLVHISGRFSAA 230


>gi|300726678|ref|ZP_07060112.1| exonuclease family [Prevotella bryantii B14]
 gi|299776048|gb|EFI72624.1| exonuclease family [Prevotella bryantii B14]
          Length = 480

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 12/174 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67
            + FD E     S + R   +G  + +D   T R    F+  P      P    +H +  
Sbjct: 186 ILAFDFEAV-YYSHSSRACSLGIAQFIDGELTLRK--NFINQPPNNYYDPVTPMIHHLEP 242

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +   + P+F  I+ +   +F+E +      N+ FD G + AE +            +D  
Sbjct: 243 KDTANAPTFDKIWPKVKPYFDEADVILYHSNSPFDPGVLKAESEAYQLGI-----DLDKY 297

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           + A          L ++ K Y    SH   H +  D++    +Y++ + G   +
Sbjct: 298 TFA-SLFDVYPYKLEAITKAYHQDTSHH--HESDDDAYYCGWLYVQHLKGNKPL 348


>gi|228993630|ref|ZP_04153537.1| Sporulation inhibitor KapD [Bacillus pseudomycoides DSM 12442]
 gi|228999668|ref|ZP_04159244.1| Sporulation inhibitor KapD [Bacillus mycoides Rock3-17]
 gi|229007227|ref|ZP_04164828.1| Sporulation inhibitor KapD [Bacillus mycoides Rock1-4]
 gi|228753981|gb|EEM03418.1| Sporulation inhibitor KapD [Bacillus mycoides Rock1-4]
 gi|228760030|gb|EEM09000.1| Sporulation inhibitor KapD [Bacillus mycoides Rock3-17]
 gi|228766059|gb|EEM14706.1| Sporulation inhibitor KapD [Bacillus pseudomycoides DSM 12442]
          Length = 207

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 64/188 (34%), Gaps = 18/188 (9%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            +  + +  D E T         G   +   IIE+G V ++D      T+  ++ P    
Sbjct: 1   MDGQQFLFLDFEFTMPQNRKKPKGFFPE---IIEVGLVSVVD-CVVEDTYSSYVRPETFS 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +    K  GI  E +    SF  +  +   +        +      D+  +    + I
Sbjct: 57  CLTERCKKFLGINQEAVDGGISFLELVEKLVQYEKRCQTTIVTW-GNMDMKVLKHNCEAI 115

Query: 114 NKDPLDPSRIID-TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             +     +  D +L   R     ++  L    + YG  +     H AL D+    +++ 
Sbjct: 116 GAEFPFSGQCRDLSLEYKRFFGERNQTGLWKAIEAYG-KVGTGKHHCALDDAITTYNIF- 173

Query: 173 KMMVGGSQ 180
           K++    +
Sbjct: 174 KLVEKDKE 181


>gi|226311041|ref|YP_002770935.1| hypothetical protein BBR47_14540 [Brevibacillus brevis NBRC
          100599]
 gi|226093989|dbj|BAH42431.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 113

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 7  MRKIVFDIETTGLDS---KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKL 62
          M  I+FD+E T  ++   K + IIEIGAV+L +       FQ F+ P      S    KL
Sbjct: 1  MNYIIFDLEATCWENDRTKQNEIIEIGAVKLNENLAVIGEFQTFIKPKLNPILSDFCKKL 60

Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQ 90
            I+ + +   PSF    S F ++   +
Sbjct: 61 TSISQKEVDQAPSFGEAISHFQNWIGSE 88


>gi|317128841|ref|YP_004095123.1| exonuclease RNase T and DNA polymerase III [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473789|gb|ADU30392.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           cellulosilyticus DSM 2522]
          Length = 256

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 71/196 (36%), Gaps = 14/196 (7%)

Query: 7   MRKIVFDIETTGLDSKNDR--IIEIGAVELLDYSKT---NRTFQVFLCPNGRKNSPEALK 61
           M  IVFD+ETT   +++    IIEIGAV+L++       +  FQ ++ P  +  S    +
Sbjct: 1   MDVIVFDLETTRNMNRSSMQYIIEIGAVKLVNRGGKLSYHSRFQAYVLPPNKYVSKADRE 60

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPL 118
               +    K          +F  +   +     A +   D+  +       Q+ N   +
Sbjct: 61  FIHASKMDFKHAKKLRDTMRQFIHWIGNKPYYLCAWSTS-DLHILVRNYVYGQKYNLSWI 119

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +    +         + + +  L    K  GI +     H A+ D+   + +   ++   
Sbjct: 120 ENYNDL-QQKFGEMININRQISLTDSLKMSGIKLEGNQ-HSAIDDAMNTAKI---LLTYQ 174

Query: 179 SQINFGFKTNEDRFFK 194
           S I     +    F +
Sbjct: 175 SHIPLDMNSQSSLFSQ 190


>gi|309359092|emb|CAP32714.2| hypothetical protein CBG_14047 [Caenorhabditis briggsae AF16]
          Length = 298

 Score = 71.0 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 27/192 (14%)

Query: 10  IVFDIETTGLDSKND---RIIEIGAVELLDYSKT---NRTFQVFLCPNGRKN-SPEALKL 62
           I+ D ETT     +D    +I+   V     +KT      F  F+ P      S    + 
Sbjct: 12  IILDFETTSEGETHDYPFEVIQFSVVPYDVKAKTILEGHAFNKFVRPVVNPVLSKHCTEF 71

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFF---------------NEQNAEWIAHNAKFDVGFIN 107
            GI  E L    +F  ++ +F  +                + Q+   IA   ++    + 
Sbjct: 72  TGIKQESLNAADTFLVVYKQFLKWLQKNGFQERHFAIVSDSRQDMWRIA---QYQFRLVQ 128

Query: 108 AELQRINKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +  + +  ++  R  D  L   ++     R+++  +    GI  S R  H AL D   
Sbjct: 129 ETMPSMFRQWINIKRTFDDGLEDGQKNKLVGRSNMEKMLNYLGIEFSGR-AHDALSDCLT 187

Query: 167 LSDVYIKMMVGG 178
           L+ +  K++  G
Sbjct: 188 LAAITQKILEMG 199


>gi|171742315|ref|ZP_02918122.1| hypothetical protein BIFDEN_01424 [Bifidobacterium dentium ATCC
           27678]
 gi|171277929|gb|EDT45590.1| hypothetical protein BIFDEN_01424 [Bifidobacterium dentium ATCC
           27678]
          Length = 445

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 15/161 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVF---LCPNGRKNSPEALKLHG 64
           +  D+ETTG     D II+ G    ++     ++     +        R    +   L G
Sbjct: 233 VGIDLETTGTSPNQDYIIDAGWELYDMATGRASDAQRHTYGLSRQRELRGIGRDITSLTG 292

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLD-PSR 122
           IT   +     F                   +AHNA+F+  F+    +   +   D   R
Sbjct: 293 ITTADVAGHVPFQEDADAQRTMMTALDGRIMVAHNARFEQFFLIGNCEGYAEALRDGRIR 352

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           IID++ +A        +  ++  + + +    R  H AL D
Sbjct: 353 IIDSMKVA-------HHSEDARAQGFRLDDYARRNH-ALDD 385


>gi|117619062|ref|YP_856430.1| exodeoxyribonuclease I [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117560469|gb|ABK37417.1| exodeoxyribonuclease I [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 564

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 65/196 (33%), Gaps = 26/196 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G+    DR  +   +    D++       ++  P       PEA  + GIT +  
Sbjct: 106 DYETFGISPAKDRPAQFAGIRTDGDFNLIGEPLVIYCKPPADYLPEPEACLITGITPQKA 165

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------DP 120
           +KD    +    +  + F       + +N+ +FD       L R   DP           
Sbjct: 166 MKDGLCEADFIRQIHEQFATPGTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYAWQNGNSR 225

Query: 121 SRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             I+D L       P                L  L    G+  +H + H AL D     +
Sbjct: 226 WDILDMLRACYALRPEGIEWAFDEEGKPSFKLEKLTVANGV--AHANAHDALSDVLATIE 283

Query: 170 VYIKMMVGGSQINFGF 185
           +  K++       FG+
Sbjct: 284 M-AKLVKKAQPKLFGY 298


>gi|283456582|ref|YP_003361146.1| DnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
 gi|283103216|gb|ADB10322.1| DnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
          Length = 439

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 15/161 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVF---LCPNGRKNSPEALKLHG 64
           +  D+ETTG     D II+ G    ++     ++     +        R    +   L G
Sbjct: 227 VGIDLETTGTSPNQDYIIDAGWELYDMATGRASDAQRHTYGLSRQRELRGIGRDITSLTG 286

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLD-PSR 122
           IT   +     F                   +AHNA+F+  F+    +   +   D   R
Sbjct: 287 ITTADVAGHVPFQEDADAQRTMMTALDGRIMVAHNARFEQFFLIGNCEGYAEALRDGRIR 346

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           IID++ +A        +  ++  + + +    R  H AL D
Sbjct: 347 IIDSMKVA-------HHSEDARAQGFRLDDYARRNH-ALDD 379


>gi|238795750|ref|ZP_04639264.1| Exodeoxyribonuclease I [Yersinia mollaretii ATCC 43969]
 gi|238720476|gb|EEQ12278.1| Exodeoxyribonuclease I [Yersinia mollaretii ATCC 43969]
          Length = 476

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 67/207 (32%), Gaps = 28/207 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           M  KNK     V D ET G     DR  +   V   LD++       ++  P       P
Sbjct: 1   MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCAPADDYLPQP 60

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  L +  + +    +    FN      + +N  +FD         R   
Sbjct: 61  EAVMITGITPQHALANGVNEAEFARQINQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  G+   H  
Sbjct: 121 DPYAYSWQGGNSRWDLLDVMRACYALRPEGIIWPENEDGLPSFKLEHLTKANGVE--HLH 178

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINF 183
            H A+ D H    + +  +V  +Q   
Sbjct: 179 AHDAMSDVHAT--IAMAKLVKQAQPRL 203


>gi|146302457|ref|YP_001197048.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
 gi|146156875|gb|ABQ07729.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
          Length = 181

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 10/176 (5%)

Query: 3   RKNKMRKIVFDIETT---GLDSKN--DRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNS 56
            K   + I+ D+E T   G+  K   + IIEIG AV      +  +   + + P     S
Sbjct: 1   MKTTDKIIIIDLEATCWQGVVPKGQQNEIIEIGLAVLDSQTGEITKNKGILIKPQRSTVS 60

Query: 57  PEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           P   +L  IT + L K+  SF    +   D +N  +    A   ++D+  +  + +    
Sbjct: 61  PFCTELTTITQDLLDKNGVSFEEAVNLLIDEYNP-DLYTWASYGQYDLNMLTKQCKSFGI 119

Query: 116 DPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                   I+       K    R+  +N   +   I +   + H  + D+  ++ +
Sbjct: 120 PYPMGEEHINVKEHFAEKFGLKRSTGMNGALQLLNIPLEG-THHRGIDDAKNIAKI 174


>gi|312962787|ref|ZP_07777274.1| exodeoxyribonuclease I [Pseudomonas fluorescens WH6]
 gi|311282814|gb|EFQ61408.1| exodeoxyribonuclease I [Pseudomonas fluorescens WH6]
          Length = 475

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 56/177 (31%), Gaps = 24/177 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ +NDR +++  +   L+ ++      ++  P       P A  + GIT   L
Sbjct: 8   DYETTGINPRNDRPLQVAGIRTDLELNEIGPPVNLYCRPGDDILPHPAACAITGITPGVL 67

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +K  + +   +               +N  +FD       L R   DP           
Sbjct: 68  DEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREWQGGNSR 127

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              ID +  A    P               L  L       I H   H AL D    
Sbjct: 128 WDLIDVVRTAYALRPEGIEWPQQDGRVTLKLERLTAA--NAIDHGQAHDALSDVRAT 182


>gi|47528879|ref|YP_020228.1| exonuclease [Bacillus anthracis str. 'Ames Ancestor']
 gi|65320817|ref|ZP_00393776.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bacillus anthracis str. A2012]
 gi|47504027|gb|AAT32703.1| exonuclease family protein [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 242

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 9/140 (6%)

Query: 39  KTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98
           K    F   + P G + +    KL GIT + L     F  I  +F  F   +++ ++   
Sbjct: 2   KVIGEFSELVKP-GARLTRHTTKLTGITKKDLIGVEKFPQIIEKFIRFIG-EDSIFVTWG 59

Query: 99  AKFDVGFINAELQRINKDPLDP--SRIIDT---LSIARRKHPSSRNDLNSLCKRYGITIS 153
            + D  F++ +    + +       R ID    +  A  +       L S  ++ G+   
Sbjct: 60  KE-DYRFLSHDCTLHSVECPCMEKERRIDLQKFVFQAYEELFEHTPSLQSAVEQLGLIWE 118

Query: 154 HRSKHGALLDSHLLSDVYIK 173
            +  H AL D+   +++ +K
Sbjct: 119 GKQ-HRALADAENTANILLK 137


>gi|332184270|gb|AEE26524.1| Exodeoxyribonuclease I [Francisella cf. novicida 3523]
          Length = 482

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 28/196 (14%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEALKL 62
                + +D+ETTG+++  D++++  A+           F  F+   P+    SP A   
Sbjct: 3   QNQTFLFYDLETTGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTP-SPIATIT 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFIN-------------- 107
           H I+        S      +     N      I +N   FD  F+               
Sbjct: 62  HHISIAQANTGVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121

Query: 108 --AELQRINKDPLDPSRII---DTLSIARRKHPSSRN----DLNSLCKRYGITISHRSKH 158
                 R +  P+     +   D L   +      +      L +L     +  S    H
Sbjct: 122 FKNGCSRADLFPIVTCYHLFCNDVLKWPKILDEEGQQKISLKLENLNTENNL-YSGGRAH 180

Query: 159 GALLDSHLLSDVYIKM 174
            A+ D  +  ++  K+
Sbjct: 181 DAITDVIVTVELAKKL 196


>gi|326576077|gb|EGE25996.1| DNA polymerase III subunit epsilon [Moraxella catarrhalis O35E]
          Length = 120

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62
            +    + FD ETT LD    +II IGAV++      T+ TF++ + P G       + +
Sbjct: 25  THPDELVSFDCETTSLDISEAQIISIGAVKIRGNRILTSETFEILIKPEGM-IQATNVTI 83

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97
           HG+  + L           +F  F   +    + +
Sbjct: 84  HGLRPKGLSGGVKVDFAIEQFLQFVGGR--PLVGY 116


>gi|219883159|ref|YP_002478321.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7425]
 gi|219867284|gb|ACL47622.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7425]
          Length = 812

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 64/180 (35%), Gaps = 31/180 (17%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             ++   IV D E       +  + EI  ++    +     F       G  ++ + ++L
Sbjct: 1   MTDRSDFIVVDTE------GSSELSEISILDSQ-GTLIYEAFS-----EGHPSN-QTIRL 47

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           +      LK       I  +F +    +N   + H+A  D   +     R      D   
Sbjct: 48  N------LK---PLPDIIHDFIEI--ARNRPIVCHHANHDNEVLKYSFARAGYTWRD-FS 95

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHR-----SKHGALLDSHLLSDVYIKMMV 176
            + T  ++++  P++    L  LCK   + +  +       H A  D+     +Y+K++ 
Sbjct: 96  FVCTWELSKQFFPNAAGYSLEFLCKHLSLKVRGQRFNPAQAHTARYDAEFTHQLYLKILE 155


>gi|226945876|ref|YP_002800949.1| exonuclease I [Azotobacter vinelandii DJ]
 gi|226720803|gb|ACO79974.1| Exodeoxyribonuclease I [Azotobacter vinelandii DJ]
          Length = 476

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 25/195 (12%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ + DR +++  +   +  ++      ++  P       P A  + GIT   L
Sbjct: 9   DYETTGINPRCDRPLQVAGIRTDEALNEIGAPLNLYCRPADDILPHPAACLVTGITPRLL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++        +               +N+ +FD       L R   DP           
Sbjct: 69  AERGLCEAEFVTRLHAELALPGTCTAGYNSLRFDDEISRHALYRNFFDPYAREWQAGNSR 128

Query: 124 ---IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID L  A    P   +           L  L    GI   H   H AL D       
Sbjct: 129 WDLIDLLRTAYALRPEGIHWPQEEGRVSLRLERLTAANGIE--HGQAHDALADVRAT-IA 185

Query: 171 YIKMMVGGSQINFGF 185
             +++       +G+
Sbjct: 186 LARLLRERQPKLYGY 200


>gi|254449147|ref|ZP_05062598.1| exodeoxyribonuclease I [gamma proteobacterium HTCC5015]
 gi|198261261|gb|EDY85555.1| exodeoxyribonuclease I [gamma proteobacterium HTCC5015]
          Length = 474

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 63/192 (32%), Gaps = 25/192 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDE-F 69
           D+ET G D K  RI +        D +       ++  P       PEA  + GIT +  
Sbjct: 9   DLETFGTDPKTTRIAQFAGQRTDADLNPIGDPLVIYCQPSPDFLPDPEACLITGITPQVA 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++    S         F++ N   + +N+ +FD  F+     R   DP           
Sbjct: 69  AREGLPESEFIQRIHREFSQPNTCVLGYNSLRFDDEFMRYGFYRNFIDPYAREWQNGCSR 128

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              ID + + R   P              N L  L +  G+   H   H A  D      
Sbjct: 129 WDLIDVVRLTRALRPEGIEWPFHEDGTPSNKLEDLTQANGLV--HSKAHDAYSDIEATIA 186

Query: 170 VYIKMMVGGSQI 181
           V  ++     ++
Sbjct: 187 VAKRIKEKQPKL 198


>gi|170590708|ref|XP_001900113.1| exonuclease family protein [Brugia malayi]
 gi|158592263|gb|EDP30863.1| exonuclease family protein [Brugia malayi]
          Length = 399

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 72/221 (32%), Gaps = 26/221 (11%)

Query: 11  VFDIETTG---LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGI 65
           V D E T    L   N  IIE    +  +   +    F  ++ P      S       GI
Sbjct: 148 VIDFECTCEADLYDYNHEIIEFPAVLVDVRKKEIVDVFHSYVRPLANPQLSEFCSAFTGI 207

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA---------KFDV-GFINAELQRINK 115
           T E +     F  +   F  +           N           +D+  F   +  +   
Sbjct: 208 TQEMIDKALPFIDVLDSFRTWMQLHRL---GQNDMRYAFVTDGPWDIAKFFQMQCIQSKL 264

Query: 116 DPLDPSRIIDT------LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           + +               +   +K+   + +L  +     +    R  H  L DS  ++ 
Sbjct: 265 NTVPHDFRFYINIRRSFANKYCKKYSMQKINLGGMLTFLNMKFEGRE-HSGLDDSKNIAR 323

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
           + IKM+   S++    K    +   E+ K +PN+ + K D+
Sbjct: 324 IVIKMLEDRSELRVNEKLVRIKE-SEKAKLLPNMKMNKEDR 363


>gi|149409288|ref|XP_001508438.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 683

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 29/197 (14%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G    +  IIE    +      +    FQ ++ P      S   ++L 
Sbjct: 39  IVIDFESTCWNDGKHHYSQEIIEFPAVLLNTSTGEIESEFQCYVQPQEHPILSEFCIELT 98

Query: 64  GITDEFLKDKPSFSSIFSEFWDFF---------------------NEQNAEWIAHNAKFD 102
           GI    + +        S+F  +                        ++  ++  +    
Sbjct: 99  GIKQAQVDEGVPLKICLSQFCKWIQMIQQKKKIIFAPGISNPATSEVKSCAFVTWSDWDL 158

Query: 103 VGFINAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +  E +R   + P   +  ID  +  +  +      L+   +  G+  S +  H  L
Sbjct: 159 GVCLEYECKRKQLRKPEILNSWIDLRATYKLFYMRKPKGLSGALQDLGLKFSGQE-HSGL 217

Query: 162 LDSHLLSDVYIKMMVGG 178
            DS   + +  +M+  G
Sbjct: 218 DDSRNTAHLAWRMIGDG 234


>gi|90409780|ref|ZP_01217797.1| hypothetical protein P3TCK_03416 [Photobacterium profundum 3TCK]
 gi|90329133|gb|EAS45390.1| hypothetical protein P3TCK_03416 [Photobacterium profundum 3TCK]
          Length = 186

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 10/170 (5%)

Query: 8   RKIVFDIETT----GLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R + FD+E      G D K   IIEIG  EL LD  +  R  Q ++ P   + S    +L
Sbjct: 5   RIVCFDLEMCCWNDGRDPKTGEIIEIGLAELDLDTGEIVRRTQHYVKPEHDEISEFCTEL 64

Query: 63  HGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDP 120
            GI  + + K+    + I       F  ++  + A     D   ++AE        P   
Sbjct: 65  TGIKPQVIHKNGKPLAEILRSMESKFGGKHKIYAA--WGHDDRILHAECAAKGLKVPFTE 122

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              +  +   +R     R    +  +  G+    R  H   +D++ L+ +
Sbjct: 123 YINLAMIFRLQRHVKKKRCGQRAAMEIAGLEWEGRQ-HSGYVDAYNLARL 171


>gi|84387297|ref|ZP_00990317.1| exonuclease I [Vibrio splendidus 12B01]
 gi|84377746|gb|EAP94609.1| exonuclease I [Vibrio splendidus 12B01]
          Length = 351

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 61/201 (30%), Gaps = 25/201 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PE 58
           M   N+     FD ET G+    DR  +   V    D++       ++  P       PE
Sbjct: 1   MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  +  IT +             ++      + N   + +N+ +FD         R   D
Sbjct: 61  AALITRITPQKAASQGLPEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI-----IDTLSIARRKH---PSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S        D L + R  H   P                L  L    GI   H + 
Sbjct: 121 PYAWSWQNGNSRWDLLDVMRAVHALRPDGINWPPNEEGYPSFKLEHLSVANGIE--HENA 178

Query: 158 HGALLDSHLLSDVYIKMMVGG 178
           H A+ D     ++  K+    
Sbjct: 179 HDAMADVIATIELAKKLKAAQ 199


>gi|242014471|ref|XP_002427913.1| 3' histone mRNA exonuclease, putative [Pediculus humanus corporis]
 gi|212512397|gb|EEB15175.1| 3' histone mRNA exonuclease, putative [Pediculus humanus corporis]
          Length = 386

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 74/189 (39%), Gaps = 15/189 (7%)

Query: 9   KIVFDIETTGLDSKNDR--IIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHG 64
            +V D E T  + K DR  IIE    +      K    F+++  P      S   ++L G
Sbjct: 105 YVVIDFEATCDNKKIDRQEIIEFPAVLVNSKKQKIEDCFRMYCKPRINPKLSQYCMELTG 164

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNA------EWIAHNAKFDVG-FINAELQRINKD- 116
           IT E + +  +F  + S + ++  + N         +  +  +D+  F+ ++    N   
Sbjct: 165 ITQEQVDNAETFDKVLSHYNNWLKKHNLGTKNKRYAVVTDGNWDMSKFLVSQCHYSNVPI 224

Query: 117 PLDPSRIIDTLSIARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           P      ++     +  +    N   L ++ +   +    R  H  L D+  ++ + +KM
Sbjct: 225 PKWGKTWVNLKKTFKNFYQKGENRICLKTMLEMLNMEFIGR-PHCGLDDAKNIARILLKM 283

Query: 175 MVGGSQINF 183
           +  GS I  
Sbjct: 284 IYDGSNIQI 292


>gi|300312923|ref|YP_003777015.1| exodeoxyribonuclease I [Herbaspirillum seropedicae SmR1]
 gi|300075708|gb|ADJ65107.1| exodeoxyribonuclease I (3'-> 5' specific) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 467

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 68/235 (28%), Gaps = 32/235 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G   + DR  +  AV    + ++      ++  P       P +  + GIT +  
Sbjct: 10  DYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCLITGITPQHC 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           L          +       E     + +N  +FD       F    +    ++  +    
Sbjct: 70  LAHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYAREWQNGCGR 129

Query: 124 IDTLSIARRKH---PSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            D L + R  +   P                L  L K  G+   H + H AL D      
Sbjct: 130 WDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLV--HEAAHDALSDVRAT-- 185

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
             I +     Q N          +K++K        + R    F   +      H
Sbjct: 186 --IALARLIRQNNPRLFDFALALYKKDKAAAEIGLPVPRP---FLHASGMFPVAH 235


>gi|150401941|ref|YP_001329235.1| exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C7]
 gi|150032971|gb|ABR65084.1| Exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C7]
          Length = 189

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 25/150 (16%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--- 66
           +  D ETTGL+     I +I  +   D     +   ++   N      +A  +HG++   
Sbjct: 3   VFLDTETTGLEPGQ--IAQISYIISDDDLNIQKAENIYFKVN--SMETKAQSVHGLSIEK 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E L D  SF+   ++  D  +++    I HN  FD  F+N+E  R   +     +   T
Sbjct: 59  LELLSDGKSFTDHANQILDDIDQK--ILICHNVPFDYKFLNSEFVRCGIEYDP--KKFCT 114

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156
           +           N   +LC   GI   +R 
Sbjct: 115 M-----------NHYTNLC---GIPNPYRP 130


>gi|123442974|ref|YP_001006949.1| exonuclease I [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122089935|emb|CAL12792.1| exodeoxyribonuclease I [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 476

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 61/191 (31%), Gaps = 26/191 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           M  KNK     + D ET G     DR  +   V   LD++       V+  P       P
Sbjct: 1   MSDKNKQPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQP 60

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  L +  + +    +    FN      + +N  +FD         R   
Sbjct: 61  EAVMITGITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  G+   H  
Sbjct: 121 DPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVE--HSH 178

Query: 157 KHGALLDSHLL 167
            H A+ D +  
Sbjct: 179 AHDAMSDVYAT 189


>gi|119920012|ref|XP_001253741.1| PREDICTED: three prime histone mRNA exonuclease 1-like [Bos taurus]
 gi|297492734|ref|XP_002699843.1| PREDICTED: three prime histone mRNA exonuclease 1-like [Bos taurus]
 gi|296471031|gb|DAA13146.1| three prime histone mRNA exonuclease 1-like [Bos taurus]
          Length = 370

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 77/219 (35%), Gaps = 22/219 (10%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 130 ICIIDFEATCEEGNPPEFIHEIIEFSVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 189

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGF---INAELQRIN 114
            GIT + +    +F  +  +  D+        +    I  +  +D+     I  +L R+ 
Sbjct: 190 TGITQDQVDKADTFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRLK 249

Query: 115 KDPLDPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             P    + I         +  P S+  L  + ++ G+       H  L DS  ++ + +
Sbjct: 250 YPPFAK-KWISIQKSYGNFYKVPRSQIKLTIMLEKLGMDYDG-WPHSGLDDSKNVARIAV 307

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
           +M+    Q     + NE            ++ +     P
Sbjct: 308 RML----QDGCELRVNEKMHAAALMSVSSSLPIEGTPAP 342


>gi|120555513|ref|YP_959864.1| exonuclease I [Marinobacter aquaeolei VT8]
 gi|120325362|gb|ABM19677.1| Exodeoxyribonuclease I subunit C [Marinobacter aquaeolei VT8]
          Length = 482

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 84/234 (35%), Gaps = 32/234 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDE-F 69
           D ET G+D  +DR  +   V    D +       ++  P +    SPEA  + GIT +  
Sbjct: 9   DYETFGVDPVHDRPSQFAGVRTDADLNIIEDPLVIYCKPADDYLPSPEACLITGITPQKA 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L+D    +   ++    F++     + +N+ +FD       L R  +DP           
Sbjct: 69  LEDGFPEAEFIAQINAAFSQPGTCAVGYNSLRFDDEVTRHTLYRNLRDPYAREWQNGNSR 128

Query: 124 ---IDTLS-----------IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              ID +              R++  S    L  L    GI  +H + H A+ D      
Sbjct: 129 WDIIDMVRLTYALRPEGINWPRKEDGSPSFRLEELTVANGI--AHEAAHDAMSDVLATIA 186

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           V  K++       F F  N      ++K +   +      KP+F  I+ +    
Sbjct: 187 V-AKLIKEKQPKLFDFVLNN-----KDKHSARQMLDTASMKPVF-HISAKYPAA 233


>gi|213162324|ref|ZP_03348034.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica
          serovar Typhi str. E00-7866]
          Length = 73

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
          + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4  IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58

Query: 71 KDKPSFSSIFS 81
           DKP    +  
Sbjct: 59 ADKPWIEDVIP 69


>gi|330813552|ref|YP_004357791.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486647|gb|AEA81052.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. IMCC9063]
          Length = 473

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 71/191 (37%), Gaps = 40/191 (20%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--------LCPNGRKNSPE 58
           M    +D ETTG     D+II++GAV        N  FQ          L P G    P 
Sbjct: 1   MNYAFYDFETTGRSGTWDQIIQVGAV------LVNAEFQELDRFEAKCGLRP-GLVPEPG 53

Query: 59  ALKLHGITDEFLKDKPSFSS---IFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRIN 114
           AL ++  T + L+ K + S    +      F     A +I +N+  FD  F+   L +  
Sbjct: 54  ALLVNKTTPDMLR-KTNLSHYGLVDQMLQTFKKWTPAIFIGYNSIGFDEEFLRKTLFKTL 112

Query: 115 KDP----LDPSRIIDTLSIAR---RKHPS-----------SRNDLNSLCKRYGITISHRS 156
            DP     + ++  D L +AR     +P                L+ L    GI   H +
Sbjct: 113 NDPYLTQFNGNKRGDILGLARTAHLYYPDCIKTPTSDKGNPVFKLDQLAPMNGIE--HGN 170

Query: 157 KHGALLDSHLL 167
            H A+ D    
Sbjct: 171 AHDAIGDVLAT 181


>gi|50085361|ref|YP_046871.1| putative DNA exonuclease X [Acinetobacter sp. ADP1]
 gi|49531337|emb|CAG69049.1| putative DNA exonuclease X [Acinetobacter sp. ADP1]
          Length = 232

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 94/236 (39%), Gaps = 40/236 (16%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVF--LCPNGRKNSPEA 59
            N M  I+ D ET    + N + IEI    +E+ +   T    Q+F  L       S  A
Sbjct: 1   MNVMNAIILDTET---HTLNGKPIEIAYAPIEIHNGKMTLDKSQLFDQLYSVEEPISYAA 57

Query: 60  LKLHGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           + +H I +  L+++P   SF                  I HN  +D+  I     R   D
Sbjct: 58  MAVHHILESDLQNQPLYTSFE---------LPTSTQYIIGHNIDYDINAI----ARCGVD 104

Query: 117 PLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISH-------RSKHGALLDSHLLS 168
            +   + I TL++AR+  P S  +++++L   Y I+          +  H A  D  L +
Sbjct: 105 -VRHIKAICTLALARKVWPESEAHNISALI--YQISKGSPKARELLKGAHRADADIILTA 161

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPN-ISLLKRDKPLFTRITKEELDE 223
           ++ + ++      +    T E+ +   E+  +P  I+  K      + + ++ +  
Sbjct: 162 NILMHIVH-----HLDISTIEELYNASEEARIPKIINFGKHKGTAISDLPRDYIQW 212


>gi|229181208|ref|ZP_04308539.1| Sporulation inhibitor KapD [Bacillus cereus 172560W]
 gi|228602262|gb|EEK59752.1| Sporulation inhibitor KapD [Bacillus cereus 172560W]
          Length = 207

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 20/189 (10%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            ++ R +  D E T         G   +   IIE+G V  +   K   T+   + P    
Sbjct: 1   MDEQRFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLV-SVAGCKVEDTYSSHVRPKTFP 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +    K  GI  E +    SF  +  +  ++  +     +      D+  +    +  
Sbjct: 57  SLTDRCKKFLGIKQEVVDKGISFPELVKKLSEYETKCKPTIVTW-GNMDMKVLKHNCEMA 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                   +  D     ++     RN   L    + YG  +     H AL D+    +++
Sbjct: 116 GITFPFFGQCRDLSLEYKKFF-GERNQTGLWKAIEAYG-KVGTGKHHCALDDAMTTYNIF 173

Query: 172 IKMMVGGSQ 180
            K++    +
Sbjct: 174 -KLVEKDKE 181


>gi|115524481|ref|YP_781392.1| exodeoxyribonuclease I [Rhodopseudomonas palustris BisA53]
 gi|115518428|gb|ABJ06412.1| Exodeoxyribonuclease I subunit C [Rhodopseudomonas palustris
           BisA53]
          Length = 490

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 36/198 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV------FLCPNGRKNSPEAL 60
           M  + FD ETTGL    D+I+   A+   +       F+V       + P+     P AL
Sbjct: 1   MGFVFFDTETTGLRHGFDQIVHFAAIRTDNDLNETDRFEVRSRLLPHVVPH-----PSAL 55

Query: 61  KLHGITDEFLKDK--PSFSSIFSEF-WDFFNEQNAEWIAHNA-KFDVGFI-NAELQRINK 115
           + + ++ E L D   PS   +             + ++ +N+ +FD   + +A  Q ++ 
Sbjct: 56  RTNRLSIERLIDGTLPSHYEMVRAIQRTLLAWSPSIFVGYNSIRFDEEMLRHALFQTLHP 115

Query: 116 DPLDPSRIID------------TLSIARRKHPSSR-----NDLNSLCKRYGITISHRSKH 158
             L  +                TLS A    P          L+ L       + H   H
Sbjct: 116 AYLTSNNGNCRADALGLIMAAATLSPACLVVPLGPEGRPIFRLDQLASV--NDLKHDQAH 173

Query: 159 GALLDSHLLSDVYIKMMV 176
            A+ D     D+  +++ 
Sbjct: 174 DAMADVAATLDL-CRLVR 190


>gi|170752204|ref|YP_001783349.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659331|gb|ACB28381.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
          Length = 298

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 58/161 (36%), Gaps = 17/161 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCP---NGRKNSPEALKLHG 64
           +V D+ETTG D   D +IE+G ++  +Y  + R ++V   L       +    E  +L G
Sbjct: 42  LVVDVETTGTDFGTDEVIELGILKF-EYGASGRIYRVLDTLNQLQEPRKPIPVEITRLTG 100

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           ITD  +  +     I            A  IAHNA FD                + +   
Sbjct: 101 ITDADVAGQ----RIDDAAVARIAADAAVVIAHNASFDWQMCEPRWP----VFREKNWGC 152

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
               I  R        L  L    G    HR  H A+ D H
Sbjct: 153 SCHQIPWRAEGHEGLKLGYLLSDCG--FFHRG-HRAIDDCH 190


>gi|167522769|ref|XP_001745722.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776071|gb|EDQ89693.1| predicted protein [Monosiga brevicollis MX1]
          Length = 320

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 29/202 (14%)

Query: 10  IVFDIETTG---LDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRK-NSPEALKLHG 64
            V D E T           IIEI A+ L     +   TFQ ++ P      S     L G
Sbjct: 102 CVMDFEATCEEERSPFPHEIIEIPAILLDAKSGELLDTFQTYVRPKLNPQLSKFCTNLTG 161

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFN------------EQNAEWIAHNAKFDVG-FINAELQ 111
           IT + +     F   + +F DF              +      A +  +D   F+  + Q
Sbjct: 162 ITQDQVDAAKLFPEAWQDFEDFLGKAVQKFKASHDVDDVRVLCASDGPWDFRDFLAFQCQ 221

Query: 112 RINKD-PLDPSRIIDT---------LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
               D P    + +D          L  A  +  +    L+ + +  G+T   R  H  +
Sbjct: 222 LSQMDYPAVCQQWMDVRKRLTKHFKLKWAGPERAAYATGLDFMLQAVGLTFEGR-PHSGI 280

Query: 162 LDSHLLSDVYIKMMVGGSQINF 183
            DS  ++ +   ++  G+Q++ 
Sbjct: 281 DDSRNIARLVQVLIDEGAQLSV 302


>gi|89100275|ref|ZP_01173141.1| sporulation inhibitor KapD [Bacillus sp. NRRL B-14911]
 gi|89085013|gb|EAR64148.1| sporulation inhibitor KapD [Bacillus sp. NRRL B-14911]
          Length = 206

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 55/174 (31%), Gaps = 17/174 (9%)

Query: 10  IVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEA 59
           +  D E T         G   +   IIE GAV +L+ +     F  F+ P +  + S   
Sbjct: 8   LFIDFEFTMPERNEKFKGFSPE---IIEAGAVSVLNGA-ILEQFSSFVAPIHFPELSERC 63

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
                I+ E +    SF+ +             E +      D+  +     +       
Sbjct: 64  KSFLHISQEQVDKGISFADLICRLEQMGGNNADEIVTW-GNMDMKVLRQNCSQAGTAFPF 122

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             + +D     +R         L    K YG   + R  H AL D+     +Y 
Sbjct: 123 KGKEVDLSMEYKRFFGDQNQTGLWKAVKEYGKEGTGR-HHRALDDALTTYKIYQ 175


>gi|297682312|ref|XP_002818868.1| PREDICTED: 3'-5' exoribonuclease 1-like [Pongo abelii]
          Length = 349

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 75/201 (37%), Gaps = 16/201 (7%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGF---INAELQRIN 114
            GIT + +    +F  +  +  D+        +    I  +  +D+     I  +L R+ 
Sbjct: 190 TGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRLK 249

Query: 115 KDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             P       I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++
Sbjct: 250 YPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR-PHCGLDDSKNIARIAVR 308

Query: 174 MMVGGSQINFGFKTNEDRFFK 194
           M+  G ++    K +  +   
Sbjct: 309 MLQDGCELRINEKMHAGQLMS 329


>gi|157693568|ref|YP_001488030.1| sporulation inhibitor KapD [Bacillus pumilus SAFR-032]
 gi|157682326|gb|ABV63470.1| exonuclease [Bacillus pumilus SAFR-032]
          Length = 206

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 13/175 (7%)

Query: 6   KMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPE 58
           +   +V D E T  D K         IIE G V+    +  + TF  ++ P      +  
Sbjct: 4   QKTVLVVDFEFTMPDGKYHPQNFFPEIIEAGVVKAASETIID-TFSSYVKPKKFPKLTKR 62

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                GIT + ++   SF +   +       ++ E I      D+  +      +N    
Sbjct: 63  CKSFLGITQQDVESGISFEAFIEKLVSLDGGEDCEIITW-GNMDMKVLKQNCM-LNHIGF 120

Query: 119 DPSRIIDTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                +  L+   +     R    L    K YG   + +  H AL D+     ++
Sbjct: 121 PFKGKLRDLAFEYKTFFGDRTLTGLRKAAKEYGSEGAGK-HHKALDDAMTTYQLF 174


>gi|66768743|ref|YP_243505.1| hypothetical protein XC_2435 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|66574075|gb|AAY49485.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 185

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 68/171 (39%), Gaps = 13/171 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D+ET G       ++ IGA  + +     +T+   L P   +  P AL++ G++ E
Sbjct: 8   FISVDVETAGPIPGIYSLLSIGACVIEN---PVQTYACELKPTTTQADPAALEVTGLSLE 64

Query: 69  FL-KDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            L ++  +      EF  +      ++    ++  NA FD  FIN    R   D      
Sbjct: 65  RLAREGLAPEVAMREFRTWVLGVCESKGEPVFVGFNAAFDWSFINYYFHRYLGDNPFGFS 124

Query: 123 IID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +D  +L +   +        + + K     ++    H A+ D+   ++++
Sbjct: 125 ALDIKSLYMGAVQCAWHDTRSSQMAKSLQPHLAGN--HDAMQDALYQAELF 173


>gi|303240841|ref|ZP_07327353.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
           cellulolyticus CD2]
 gi|302591569|gb|EFL61305.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
           cellulolyticus CD2]
          Length = 182

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 11/176 (6%)

Query: 7   MRKIVFDIETTGLD---SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKL 62
           M  I+FD+E T  +   SK   IIEIGAV+L D  +   TF  F+ P      S   ++L
Sbjct: 1   MNYIIFDLEATCWENDKSKTSEIIEIGAVKLNDRLEVVDTFSKFIKPAIYPVLSDFCIRL 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPS 121
             I  + +     F ++  EF ++    + E    +  F D   I  E +  N       
Sbjct: 61  TSIEQKDVDTADIFKNVMVEFENWITSSDTEVALCSWGFYDKKQIYKECEVKNYSG-RIH 119

Query: 122 RIIDTLSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            ++D     + +    +      ++      G+ +   + H  + D+  ++ +++ 
Sbjct: 120 SLLDKHISIKHQFAEIKGISPCGMSRALDLLGLPLEG-THHRGIDDAKNITKIFVA 174


>gi|319760584|ref|YP_004124522.1| exodeoxyribonuclease I [Candidatus Blochmannia vafer str. BVAF]
 gi|318039298|gb|ADV33848.1| exodeoxyribonuclease I [Candidatus Blochmannia vafer str. BVAF]
          Length = 491

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 25/192 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEA 59
           + +N+    ++D ET GL+   DR  +   + + D        ++F C  P+    +PE+
Sbjct: 3   LLQNQPNFFIYDYETFGLNPALDRPAQFAGIRVDDKLCPIAKKEIFFCQIPHDYLPNPES 62

Query: 60  LKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDP 117
           +   GIT ++ L+   + S      ++ FN+ N   + +N   FD  F      R   DP
Sbjct: 63  VLTTGITPQYTLQYGLTESEFAYRIFNIFNKPNTCIVGYNNINFDDEFTRHTFYRNFCDP 122

Query: 118 L-----DPSRIIDTLSIARR---KHPSS-----------RNDLNSLCKRYGITISHRSKH 158
                   +   D L I R     +P                L  L   Y   I H + H
Sbjct: 123 YLWAYNHGNSRWDLLPILRAYYSLYPEKIYWPINNKNKISFRLIDLT--YANHIEHLNVH 180

Query: 159 GALLDSHLLSDV 170
            A+ D +   ++
Sbjct: 181 DAMSDVYATLEI 192


>gi|119490378|ref|ZP_01622856.1| hypothetical protein L8106_13790 [Lyngbya sp. PCC 8106]
 gi|119454037|gb|EAW35191.1| hypothetical protein L8106_13790 [Lyngbya sp. PCC 8106]
          Length = 829

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 31/173 (17%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V D E    +     + EI  ++          F+  +      NS +++K  GI  +
Sbjct: 4   YVVVDTE---GNPL---LKEIAVIDSSGILI----FEAIV-----TNSSQSIK-TGIRVQ 47

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L       ++ + F      QN   + H A+ D+  +    +     P     I  T  
Sbjct: 48  ML------ETVLNNFIKVI--QNKILVFHYAEHDLKVLYYSFKAAGITP-PKLTIRCTWE 98

Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRS-----KHGALLDSHLLSDVYIKMM 175
           +++  +P      L +L K   + I+ +       H A  D+     +Y  +M
Sbjct: 99  LSKFYYPRMQSYSLEALSKFLHLKINGKRFNSSLAHRAKYDALFTHQLYQHLM 151


>gi|297183623|gb|ADI19749.1| hypothetical protein [uncultured gamma proteobacterium EB000_37F04]
          Length = 480

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 77/224 (34%), Gaps = 31/224 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFL 70
           D ET+G D   DR  +   +    + +   +   ++  P   R   P A+++ GIT +  
Sbjct: 11  DYETSGADPTQDRPWQFAGIRTDAELNIVGKPLTLYAQPTEDRLPHPAAVRVTGITPQEA 70

Query: 71  KDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +K  + ++  S       + N     +N+ +FD       L R  +DP           
Sbjct: 71  YEKGVTEATFISRILAELAKPNTCTAGYNSIRFDDEVTRFTLWRNLRDPYAREWQNGNSR 130

Query: 124 IDTLSIARRKHPSSRN--------------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            D L + R     S N               L  L    GI   H + H AL D      
Sbjct: 131 WDLLDVVRAFWALSPNGLEWPQRDDGLTSFRLEDLTAANGIE--HGAAHDALADVIAT-- 186

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
             I+M     Q +    T    +    K+ V  +  + R KP+ 
Sbjct: 187 --IEMAKRLKQSDARLFTT--LYANRSKRAVSALIDIPRLKPIV 226


>gi|206969814|ref|ZP_03230768.1| sporulation inhibitor KapD [Bacillus cereus AH1134]
 gi|228955173|ref|ZP_04117183.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229072394|ref|ZP_04205597.1| Sporulation inhibitor KapD [Bacillus cereus F65185]
 gi|229082156|ref|ZP_04214621.1| Sporulation inhibitor KapD [Bacillus cereus Rock4-2]
 gi|229193176|ref|ZP_04320128.1| Sporulation inhibitor KapD [Bacillus cereus ATCC 10876]
 gi|206735502|gb|EDZ52670.1| sporulation inhibitor KapD [Bacillus cereus AH1134]
 gi|228590296|gb|EEK48163.1| Sporulation inhibitor KapD [Bacillus cereus ATCC 10876]
 gi|228701148|gb|EEL53669.1| Sporulation inhibitor KapD [Bacillus cereus Rock4-2]
 gi|228710717|gb|EEL62689.1| Sporulation inhibitor KapD [Bacillus cereus F65185]
 gi|228804514|gb|EEM51123.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 207

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 20/189 (10%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            ++ R +  D E T         G   +   IIE+G V  +   K   T+   + P    
Sbjct: 1   MDEQRFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLV-SVAGCKVEDTYSSHVRPKTFP 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +    K  GI  E +    SF  +  +  ++  +     +      D+  +    +  
Sbjct: 57  SLTDRCKKFLGIKQEVVDKGISFPELVKKLSEYETKCKPTIVTW-GNMDMKVLKHNCEMA 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                   +  D     ++     RN   L    + YG  +     H AL D+    +++
Sbjct: 116 GIAFPFFGQCRDLSLEYKKFF-GERNQTGLWKAIEAYG-KVGTGKHHCALDDAMTTYNIF 173

Query: 172 IKMMVGGSQ 180
            K++    +
Sbjct: 174 -KLVEKDKE 181


>gi|154687258|ref|YP_001422419.1| sporulation inhibitor KapD [Bacillus amyloliquefaciens FZB42]
 gi|154353109|gb|ABS75188.1| KapD [Bacillus amyloliquefaciens FZB42]
          Length = 205

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 14/186 (7%)

Query: 4   KNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NS 56
            ++   ++ D E T  D K         IIE G V+ ++   T  TF  ++ P      +
Sbjct: 1   MDQRSLLIIDFEFTMPDGKYSPQNFFPEIIEAGIVKTVNDEVT-ETFSSYIKPKKFPKLT 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
                   IT + +    +F+    +  +   ++N   +      D+  +       N  
Sbjct: 60  KRCKTFLNITQKDVDGGITFNEFIRKLNELDPDKNCTIVTW-GNMDMKVLKQNCM-FNHI 117

Query: 117 PLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           P      +  LS+  +     R    L    + YG      + H AL D+     ++ K+
Sbjct: 118 PFPFKGELRDLSLEYKNFFGDRTLTGLWKAAEEYG-DKGTGTHHKALDDARTTYKLF-KL 175

Query: 175 MVGGSQ 180
           +    Q
Sbjct: 176 VERDKQ 181


>gi|326795181|ref|YP_004313001.1| exodeoxyribonuclease I [Marinomonas mediterranea MMB-1]
 gi|326545945|gb|ADZ91165.1| Exodeoxyribonuclease I [Marinomonas mediterranea MMB-1]
          Length = 482

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 64/179 (35%), Gaps = 25/179 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEF 69
           FD ETTG+D   DR ++   +   L+++       ++         +P+A  L GIT + 
Sbjct: 12  FDFETTGVDPAKDRPMQFAGIRTDLEFNPIGDPIMLYCKLAEDVLPNPDACLLTGITPQD 71

Query: 70  L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI---- 123
             ++    +   +E     ++     + +N  +FD   +     R   DP          
Sbjct: 72  ANREGLCEAEFMAEIEKELSQPGTCALGYNTLRFDDEVVRYGFYRNFIDPYAREWQNKCS 131

Query: 124 ----IDTLSIARRKHPSS----RN-------DLNSLCKRYGITISHRSKHGALLDSHLL 167
               ID + +     P      +N        L  L K  G  ++H   H AL D +  
Sbjct: 132 RWDVIDLVRMTYAMRPDGIKWPKNDEGKVSLKLELLTKANG--LAHEQAHDALSDVYGT 188


>gi|325921108|ref|ZP_08182979.1| Exodeoxyribonuclease I subunit C [Xanthomonas gardneri ATCC 19865]
 gi|325548380|gb|EGD19363.1| Exodeoxyribonuclease I subunit C [Xanthomonas gardneri ATCC 19865]
          Length = 481

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 62/182 (34%), Gaps = 25/182 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV               ++ P +    SP A  + GIT
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFYVQPADDLLPSPYATMVTGIT 64

Query: 67  DEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI- 123
            +  L++  S +  F+   +  +      + +N+ +FD  F+   L R   DP +     
Sbjct: 65  PQHALREGVSEAEAFARISEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREWRG 124

Query: 124 -------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                  +D L +     P                L  L       +     H AL D +
Sbjct: 125 GNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADA--NAVREGDAHEALSDVY 182

Query: 166 LL 167
             
Sbjct: 183 AT 184


>gi|301784463|ref|XP_002927641.1| PREDICTED: ERI1 exoribonuclease 2-like [Ailuropoda melanoleuca]
          Length = 679

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 29/197 (14%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G   ++  IIE    +      +    F  ++ P      S   ++L 
Sbjct: 38  IVIDFESTCWNDGKRHQSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPILSEFCMELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFD 102
           GI    + +        S+F  +  +                     +   ++  +    
Sbjct: 98  GIKQAQVDEGVPLRICLSQFCKWIQKIQQEKKIIFATGIPDLPNAEVKLCAFVTWSDWDL 157

Query: 103 VGFINAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +  E +R     P+  +  ID     +  +      L+   +  GI    R  H  L
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFYGRKPKGLSGALQEVGIEFLGRE-HSGL 216

Query: 162 LDSHLLSDVYIKMMVGG 178
            DS   + +  KM+  G
Sbjct: 217 DDSRNTALLAWKMIRDG 233


>gi|281339701|gb|EFB15285.1| hypothetical protein PANDA_017444 [Ailuropoda melanoleuca]
          Length = 672

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 29/197 (14%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G   ++  IIE    +      +    F  ++ P      S   ++L 
Sbjct: 31  IVIDFESTCWNDGKRHQSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPILSEFCMELT 90

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFD 102
           GI    + +        S+F  +  +                     +   ++  +    
Sbjct: 91  GIKQAQVDEGVPLRICLSQFCKWIQKIQQEKKIIFATGIPDLPNAEVKLCAFVTWSDWDL 150

Query: 103 VGFINAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +  E +R     P+  +  ID     +  +      L+   +  GI    R  H  L
Sbjct: 151 GVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFYGRKPKGLSGALQEVGIEFLGRE-HSGL 209

Query: 162 LDSHLLSDVYIKMMVGG 178
            DS   + +  KM+  G
Sbjct: 210 DDSRNTALLAWKMIRDG 226


>gi|71650409|ref|XP_813903.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70878830|gb|EAN92052.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 394

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 85/245 (34%), Gaps = 33/245 (13%)

Query: 9   KIVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTN--RTFQVFLCPNGRKN-SPEALK 61
            IV D+E T     D+ +  IIE  G +  +     +  R+F+ ++ P      S    K
Sbjct: 85  IIVVDVEATCESNNDNYHHEIIEFPGVLIDVRRGIVDTRRSFRSYVKPWRNPVLSEFCKK 144

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAH---------NAKFDVGFINAEL 110
           L GI+ E + + P    +   F  ++ E       +A          N  ++   +   +
Sbjct: 145 LTGISQEDVDNAPGLPEVVKAFERWYRETIPIGAKVAFAADGPWDFKNFIYEHSILRDHV 204

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                        I T + A   +  +   L+++ +R  +    R  H    D+  ++ +
Sbjct: 205 SFPGI--FYEYLDIRT-TFAHHFNRGAPIKLDAMLRRMRLRFEGR-PHCGFDDAVNIARL 260

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
            + MM  G   +F      D  +     T P    L R +    R+  +        +  
Sbjct: 261 AVAMMRAGCIFDFLIVIPMDDDYHYHLDTYP----LYRREEGSGRLDPD-------VVDD 309

Query: 231 LGKNA 235
           + K+ 
Sbjct: 310 IAKSC 314


>gi|330829787|ref|YP_004392739.1| exodeoxyribonuclease I [Aeromonas veronii B565]
 gi|328804923|gb|AEB50122.1| Exodeoxyribonuclease I [Aeromonas veronii B565]
          Length = 471

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 66/196 (33%), Gaps = 26/196 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G+    DR  +   +    D++       ++  P       PEA  + GIT +  
Sbjct: 13  DYETFGISPAKDRPSQFAGIRTDADFNIIGEPLVIYCKPPADYLPDPEACLITGITPQKA 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------DP 120
           +KD    +    +  + F   N   + +N+ +FD       L R   DP           
Sbjct: 73  MKDGLCEADFIRQIHEQFATPNTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYSWQNGNSR 132

Query: 121 SRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             I+D L       P                L  L    G  ++H + H AL D     +
Sbjct: 133 WDILDMLRACYALRPEGIEWAFDDEGKPSFRLEKLTV--GNGVAHANAHDALSDVLATIE 190

Query: 170 VYIKMMVGGSQINFGF 185
           +  K++       FG+
Sbjct: 191 M-AKLVKKAQPKLFGY 205


>gi|315122155|ref|YP_004062644.1| exonuclease I [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495557|gb|ADR52156.1| exonuclease I [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 472

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 63/182 (34%), Gaps = 25/182 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK--NSPEALKLHGIT 66
            +++D ET GLD   DR  +   + +    +T ++ +VF C         PE++ + GIT
Sbjct: 4   FVIYDYETFGLDVARDRPAQFAGIRIDHQLETIQSKEVFFCKPSDDYLVDPESVLITGIT 63

Query: 67  DE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP---- 120
            +  L+D           + FF + N     +N  +FD  +      R   DP       
Sbjct: 64  PQKALRDGVVEHEFAQRVYQFFCKPNTCIFGYNNIRFDDKYSQNIFYRNFYDPYGWSYKN 123

Query: 121 -SRIIDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            +   D +++ R  +                    L  L    GI   +   H A  D  
Sbjct: 124 GNSRWDLINVMRAIYAFSPDGIQWPHRDDGFPSFKLQDLALANGIEYVN--AHDAEQDVD 181

Query: 166 LL 167
             
Sbjct: 182 AT 183


>gi|291286506|ref|YP_003503322.1| Exonuclease RNase T and DNA polymerase III [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883666|gb|ADD67366.1| Exonuclease RNase T and DNA polymerase III [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 174

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 12/166 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D++T+G+      IIEI A++      T   F  ++  N    S    ++ GI+ E 
Sbjct: 15  VYIDMKTSGISPSKGEIIEICALKPDVDLMTYEMFHAYIKINS-DISEIFTEIEGISKEM 73

Query: 70  L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L +   S     + F  F      E ++   ++D+ F+     +     +   ++I+ + 
Sbjct: 74  LDEHGVSIEDAIARFDMFV--TGCEIVSFVPEYDLTFLKDAYSKCGL--IFNHKVINAVR 129

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              ++   +   L+ +     +       HG+        +V  K+
Sbjct: 130 TGTKETIPTGKSLDEISNYLKVP-----HHGSDSTIKAC-EVIAKI 169


>gi|332244613|ref|XP_003271468.1| PREDICTED: 3'-5' exoribonuclease 1 [Nomascus leucogenys]
          Length = 349

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 75/201 (37%), Gaps = 16/201 (7%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGF---INAELQRIN 114
            GIT + +    +F  +  +  D+        +    I  +  +D+     I  +L R+ 
Sbjct: 190 TGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRLK 249

Query: 115 KDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             P       I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++
Sbjct: 250 YPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR-LHCGLDDSKNIARIAVR 308

Query: 174 MMVGGSQINFGFKTNEDRFFK 194
           M+  G ++    K +  +   
Sbjct: 309 MLQDGCELRINEKMHAGQLMS 329


>gi|226330549|ref|ZP_03806067.1| hypothetical protein PROPEN_04467 [Proteus penneri ATCC 35198]
 gi|225201344|gb|EEG83698.1| hypothetical protein PROPEN_04467 [Proteus penneri ATCC 35198]
          Length = 204

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 62/178 (34%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G     DR  +   +   +D++       ++  PN      PEA+ + GIT +  
Sbjct: 14  DYETFGTHPALDRPAQFAGIRTDMDFNIIEDPLVIYCKPNDDYLPHPEAVMITGITPQIA 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            K+    +    +    F++ N+  + +N  +FD       L R   DP   S       
Sbjct: 74  AKNGLIEAEFTRQIHQAFSQPNSCIMGYNNLRFDDEVTRNILYRNFYDPYAYSWQKGNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D L       P                L  L K  GI  SH + H A+ D +  
Sbjct: 134 WDLLDVLRACYALRPEGIVWPENEDGFPSFRLELLTKANGI--SHENAHDAMSDVYAT 189


>gi|289812558|ref|ZP_06543187.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. AG3]
          Length = 96

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D ETTGL   +  I+EI  ++   +   N      + P  +    EA+ +HGIT+E
Sbjct: 26 YLFIDTETTGL-GDDAEIVEICIIDSHGFIMLN----TLIKPT-KPIPDEAIAIHGITNE 79

Query: 69 FLKDKPSFSSIFS 81
           +   P+++ I+ 
Sbjct: 80 MVAFAPAWTDIWR 92


>gi|146308334|ref|YP_001188799.1| exonuclease I [Pseudomonas mendocina ymp]
 gi|145576535|gb|ABP86067.1| Exodeoxyribonuclease I subunit C [Pseudomonas mendocina ymp]
          Length = 481

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 24/177 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ + DR +++  +   +  ++      ++  P+      P A  + GI  + L
Sbjct: 9   DYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAACLVTGIDPQRL 68

Query: 71  KD-KPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           +          +      +        +N+ +FD       L R   DP           
Sbjct: 69  QQLGLDEGEFVTRVHAELSAPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              ID +  A    P               L  L +  GI   H   H AL D    
Sbjct: 129 WDLIDLVRTAYALRPEGIEWPQEEGRVSLKLERLTQANGID--HGQAHDALSDVRAT 183


>gi|299529972|ref|ZP_07043399.1| exonuclease I [Comamonas testosteroni S44]
 gi|298721952|gb|EFI62882.1| exonuclease I [Comamonas testosteroni S44]
          Length = 479

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCP-NGRKNSPEALKLHGITDE-F 69
           D ET G   + DR  +   +   D  ++       +  P N     P++  + GIT +  
Sbjct: 9   DYETFGAQPRYDRPAQFAGIRTDDQLNEIGEPVMWYCQPANDYLPDPQSCLITGITPQRA 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           L++  +     +       +     + +N  +FD       F    +    ++  +    
Sbjct: 69  LEEGVAEHEFAALIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAREWQNGCGR 128

Query: 124 IDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            D L + R  +               +    L  L +  G+   H   H AL D    
Sbjct: 129 WDLLDVVRMVYALRPEGIQWPTKEDGTPSFRLEDLARANGLL--HEQAHDALSDVRAT 184


>gi|59712121|ref|YP_204897.1| exonuclease KapD [Vibrio fischeri ES114]
 gi|197336268|ref|YP_002156326.1| exonuclease KapD [Vibrio fischeri MJ11]
 gi|59480222|gb|AAW86009.1| exonuclease KapD [Vibrio fischeri ES114]
 gi|197317758|gb|ACH67205.1| exonuclease KapD [Vibrio fischeri MJ11]
          Length = 176

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 67/175 (38%), Gaps = 10/175 (5%)

Query: 8   RKIVFDIETTGLD----SKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R + FD+E    +     +   IIE+G  E+ L   +  +  Q ++ P   + S   + L
Sbjct: 5   RIVCFDLEMCCWNENGKGRTGEIIEVGLAEIDLTKGEVVKRAQYYVKPEKDEISLFCVDL 64

Query: 63  HGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDP 120
            GI+   + K     + +       F   N  + A     D   + AE +    + P + 
Sbjct: 65  TGISPRKIEKQGRPLADVLKSMVKNFGGTNKIYAA--WGHDEQILEAECKAKGIEVPFNE 122

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              + T+   R +  + R       +   I    R  H   +D++ L+ + +K++
Sbjct: 123 FLNLATIYRIRSRKKNERMGQRRAMEELNIEWEGRQ-HSGYVDAYNLAQLALKIL 176


>gi|324515366|gb|ADY46181.1| 3'-5' exonuclease eri-1 [Ascaris suum]
          Length = 402

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 73/194 (37%), Gaps = 25/194 (12%)

Query: 9   KIVFDIETTGLDS---KNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D E T  D        IIE  AV + +   +   TF   + P      S    +L 
Sbjct: 150 FVVMDFECTCEDEVYEYEHEIIEFPAVLIDVRNRRIVDTFHSHVRPRINPKLSEFCSRLT 209

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA---------KFDV-GFINAELQR- 112
           G+T E + +   F  +F  F  +          HN           +D+  F   +  + 
Sbjct: 210 GVTQEMVDNALPFVDVFDSFRMWMQSHRL---GHNNARYAFVTDGPWDIAKFFQMQCLQS 266

Query: 113 -INKDPLDPSRIIDT----LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            +   P D    I+     L+   + H + + +L+ +    G+T   R  H  L DS  +
Sbjct: 267 GLGSVPHDFRHYINIRKAFLNKYLKGHHAQKTNLSGMLSELGMTFEGRE-HCGLDDSKNI 325

Query: 168 SDVYIKMMVGGSQI 181
           + + I+M+   S++
Sbjct: 326 ARIVIRMLEDRSEL 339


>gi|325983472|ref|YP_004295874.1| exodeoxyribonuclease I [Nitrosomonas sp. AL212]
 gi|325532991|gb|ADZ27712.1| Exodeoxyribonuclease I [Nitrosomonas sp. AL212]
          Length = 478

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G D + DR  +   V   +  ++      ++  P       PEA  L GIT + L
Sbjct: 9   DYETFGADPRRDRPAQFAGVRTDEALNEIGEPLMIYCKPTRDFLPHPEACLLTGITPQ-L 67

Query: 71  KDKP--SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI---- 123
            D          +       +     + +N+ +FD       L R   DP          
Sbjct: 68  ADAQGLPEPEFIARIHAELAQPGTCGVGYNSLRFDDEVTRFTLYRNFYDPYAREWQQGNS 127

Query: 124 ----IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
               ID + +     P+               L  L    GI   H S H AL D  +  
Sbjct: 128 RWDIIDLVRMTYALRPAGITWPQHEDGQPSFKLEDLVAANGI--WHESAHDALSDVRVT- 184

Query: 169 DVYIKMMVGGSQINFGF 185
               +++       F +
Sbjct: 185 IALARLLRMQQPRLFDW 201


>gi|303312599|ref|XP_003066311.1| exonuclease family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240105973|gb|EER24166.1| exonuclease family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320033582|gb|EFW15529.1| exonuclease [Coccidioides posadasii str. Silveira]
          Length = 315

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 62/167 (37%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D E  G+    DR   +  V +++++  ++ +  F+          + K+ GIT 
Sbjct: 119 KYIAIDCEMVGVGPDPDRESALARVSIVNFAG-DQVYDSFVRTKEEVTDWRS-KVSGITP 176

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   SF  +  +     + +    I H  K D+  +      +   P    R     
Sbjct: 177 ESMEHARSFEEVQKDVASLLDGR--ILIGHAVKNDLNAL------LLSHPKHDIRDTSLH 228

Query: 128 SIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIK 173
              R+    ++  L  L     G+ I   + H ++ D+     ++ +
Sbjct: 229 PPYRKIAGGAKPRLKILAAELLGVQI-QGAAHSSVEDARATMLLFQR 274


>gi|167751276|ref|ZP_02423403.1| hypothetical protein EUBSIR_02262 [Eubacterium siraeum DSM 15702]
 gi|167655783|gb|EDR99912.1| hypothetical protein EUBSIR_02262 [Eubacterium siraeum DSM 15702]
          Length = 319

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 7/162 (4%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKLHGITDEFLKDKPSF 76
           G       II+IGAV + D   +   F  ++ P    +      KL GIT   LK+    
Sbjct: 5   GTRVLQVEIIQIGAVAVTDGIVSEDFFSEYVRPRYYTELKGRIKKLTGITKNDLKNAHDL 64

Query: 77  SSIFSEFWDFFN--EQNAEWIAHNAKFDVGFINAELQRINKD--PLDPSRIIDTLSIARR 132
           + +   F  +     ++   +      D+  +  + +   +D   L     +  L   + 
Sbjct: 65  TVVLKSFRKWLEKFGKDVIIVTW-GPDDIPTLVKQCEFYERDTGWLPEWFNLQPLMTRQY 123

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               ++  L S  +  G+       H A+ D++  + V  K+
Sbjct: 124 GIDRAQITLQSAVEITGVQ-QELDYHSAINDAYYTALVLTKI 164


>gi|239815634|ref|YP_002944544.1| exonuclease I [Variovorax paradoxus S110]
 gi|239802211|gb|ACS19278.1| Exodeoxyribonuclease I [Variovorax paradoxus S110]
          Length = 479

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G   + DR  +  A+    + ++      ++  P      SPEA  + GIT +  
Sbjct: 9   DYETFGAVPRRDRPSQFAAIRTDAELNEIGEPLMIYCKPAPDYLPSPEACLITGITPQLC 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           L+      +  ++    F++     + +N  +FD       F    +    ++  +    
Sbjct: 69  LERGIPEHAFAAQIEKAFSQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYAREWQNDCGR 128

Query: 124 IDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            D L + R  +                    L  L +  G+   H S H AL D    
Sbjct: 129 WDLLDVVRLTYALRPDGIEWPKKEDGKPSFKLEDLARANGLL--HESAHDALSDVRAT 184


>gi|332148552|dbj|BAK20125.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 256

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           +N   +++ +     + +IDTL + R  +P    + LN+LCK++ I ++    H A+ D+
Sbjct: 1   LNVAYKKLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDT 58

Query: 165 HLLSDVYIKMMVGGSQ--INFGFKTNED 190
              + + +KM+   ++  I +  + NE+
Sbjct: 59  EATAYLLLKMLKDAAEKGIQYHDELNEN 86


>gi|311278993|ref|YP_003941224.1| Exodeoxyribonuclease I [Enterobacter cloacae SCF1]
 gi|308748188|gb|ADO47940.1| Exodeoxyribonuclease I [Enterobacter cloacae SCF1]
          Length = 474

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 54/178 (30%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITD-EF 69
           D ET G     DR  +  A+    D++        +  P       P+A+ + GIT  E 
Sbjct: 14  DYETFGTSPSLDRPAQFAALRTDGDFNVIGEPEVFYCKPADDYLPQPQAVLITGITPQEA 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L    + ++        F       + +N  +FD         R   DP   S       
Sbjct: 74  LAKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQNHNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L +  GI   H + H A+ D +  
Sbjct: 134 WDLLDVMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIE--HSNAHDAMADVYAT 189


>gi|302655111|ref|XP_003019350.1| RNA exonuclease, putative [Trichophyton verrucosum HKI 0517]
 gi|291183066|gb|EFE38705.1| RNA exonuclease, putative [Trichophyton verrucosum HKI 0517]
          Length = 307

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 63/167 (37%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G+    DR   +  V +++Y+  ++ +  ++ P        +  + GI  
Sbjct: 114 KYVAIDCEMVGVGPDPDRDSALARVSIVNYNG-DQVYDSYVRPKEMVTDWRS-AISGILP 171

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +  S  ++  +     + +    I H  + D+  +   L    +D  D SR     
Sbjct: 172 KHMAEARSLETVQQDVAKLLDGR--ILIGHAVRNDLEALL--LSHSKRDIRDTSRY---- 223

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I   S H ++ D+     ++ +
Sbjct: 224 PPYRKLAGGGSPKLKILASELLGLEI-QGSAHSSVEDARATMMLFRR 269


>gi|302495881|ref|XP_003009954.1| RNA exonuclease, putative [Arthroderma benhamiae CBS 112371]
 gi|291173476|gb|EFE29309.1| RNA exonuclease, putative [Arthroderma benhamiae CBS 112371]
          Length = 309

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 63/167 (37%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G+    DR   +  V +++Y+  ++ +  ++ P        +  + GI  
Sbjct: 116 KYVAIDCEMVGVGPDPDRDSALARVSIVNYNG-DQVYDSYVRPKEMVTDWRS-AISGILP 173

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +  S  ++  +     + +    I H  + D+  +   L    +D  D SR     
Sbjct: 174 KHMAEARSLETVQQDVAKLLDGR--ILIGHAVRNDLEALL--LSHSKRDIRDTSRY---- 225

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I   S H ++ D+     ++ +
Sbjct: 226 PPYRKLAGGGSPKLKILASELLGLEI-QGSAHSSVEDARATMMLFRR 271


>gi|156974404|ref|YP_001445311.1| exonuclease I [Vibrio harveyi ATCC BAA-1116]
 gi|156525998|gb|ABU71084.1| hypothetical protein VIBHAR_02119 [Vibrio harveyi ATCC BAA-1116]
          Length = 473

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 66/204 (32%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M + N+     FD ET G     DR  +   V    +++       ++  P       P+
Sbjct: 1   MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPD 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +  +++        ++     ++ N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKAMQEGLPEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVVATIEMAKKVKAAQPKL 202


>gi|226372150|gb|ACO51700.1| Histone mRNA 3-exonuclease 1 [Rana catesbeiana]
          Length = 348

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 20/190 (10%)

Query: 9   KIVFDIETT--GLDSKN--DRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKL 62
             + D E T  G ++ +    IIE   V L     +   TFQ ++ P  +   S   + L
Sbjct: 129 ICIIDFEATCEGGNATDYVHEIIEFPIVLLNTRTLEIEDTFQRYVKPEIKPQLSEFCINL 188

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG-FINAELQ--R 112
            GIT + +    +F  +     D+  +       + A     +  +D+  F+N + +  R
Sbjct: 189 TGITQDIIDQADTFPVVLQSVVDWMRQKELGTKYKYAILT--DGSWDMSKFLNMQCRVSR 246

Query: 113 INKDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           I           I        K P ++  L  + ++ G++   R  H  L DS  ++ + 
Sbjct: 247 IKYPRFAKKWINIRKCYGNFYKVPRNQTKLTVMLEKLGMSYIGR-LHSGLDDSKNIARIA 305

Query: 172 IKMMVGGSQI 181
           I M+  G ++
Sbjct: 306 IHMLQDGCEL 315


>gi|182419854|ref|ZP_02951094.1| exonuclease family protein [Clostridium butyricum 5521]
 gi|237666497|ref|ZP_04526482.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182376402|gb|EDT73984.1| exonuclease family protein [Clostridium butyricum 5521]
 gi|237657696|gb|EEP55251.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 304

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 4/155 (2%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLKDK-PSFSSIF 80
            + IIEIGA+++  Y K     + ++ P       P+  ++  I    L+ K  +F    
Sbjct: 36  ENEIIEIGAIKVDKYMKPLGEMREYIKPTIFPIINPKVTEITKIDSNILEKKGITFEEAI 95

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN- 139
           ++  D F E      +         I        KD       +D    A +     +  
Sbjct: 96  NKLKDMF-EDGDVLCSWAKDDVAEIIINSNYHGYKDLNWLDSYLDIQEYASKILAHKKVL 154

Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            L +      I ++    H AL D+    +++ ++
Sbjct: 155 GLKTALDELKIRVNEERLHDALNDAFYTVEIFKRI 189


>gi|332148538|dbj|BAK20118.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 256

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           +N   +++ +     + +IDTL + R  +P    + LN+LCK++ I ++    H A+ D+
Sbjct: 2   LNVAYKKLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDT 59

Query: 165 HLLSDVYIKMMVGGSQ--INFGFKTNED 190
              + + +KM+   ++  I +  + NE+
Sbjct: 60  EATAYLLLKMLKDAAEKGIQYHDELNEN 87


>gi|318605038|emb|CBY26536.1| exodeoxyribonuclease I [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 476

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 61/191 (31%), Gaps = 26/191 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           M  KNK     + D ET G     DR  +   V   LD++       V+  P       P
Sbjct: 1   MSDKNKQPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQP 60

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  L +  + +    +    FN      + +N  +FD         R   
Sbjct: 61  EAVMITGITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  G+   H  
Sbjct: 121 DPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVE--HLH 178

Query: 157 KHGALLDSHLL 167
            H A+ D +  
Sbjct: 179 AHDAMSDVYAT 189


>gi|221134294|ref|ZP_03560599.1| exodeoxyribonuclease I [Glaciecola sp. HTCC2999]
          Length = 488

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 35/183 (19%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSK-------TNRTFQVFLCPNGRKNSPEALKLHGI 65
           D ET G+  ++D   +  A+   +  +             +   P+     P+A+ + GI
Sbjct: 12  DYETWGISPQHDYPCQFAAIRTDENLQQCDEPINITAKIHLDYLPH-----PQAVLVTGI 66

Query: 66  TDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPL 118
           T +  L +     +   +      + N   + +N+ KFD       F    +    ++ L
Sbjct: 67  TPQMTLAEGEYEYTFMQKIHQAMIQPNTCVVGYNSIKFDDEVSRFSFFRNFMDPYQREYL 126

Query: 119 DPSRIIDTLSIARRKH---------PSSRN-----DLNSLCKRYGITISHRSKHGALLDS 164
             +   D +++ R  +         P   N      L  L +  GI  SH + H AL D 
Sbjct: 127 HGNSRWDLINLVRACYALRPEGIKWPLGDNGLVSFKLERLTQENGI--SHTNAHDALSDV 184

Query: 165 HLL 167
           H  
Sbjct: 185 HAT 187


>gi|254517159|ref|ZP_05129217.1| exodeoxyribonuclease I [gamma proteobacterium NOR5-3]
 gi|219674664|gb|EED31032.1| exodeoxyribonuclease I [gamma proteobacterium NOR5-3]
          Length = 482

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 72/215 (33%), Gaps = 27/215 (12%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITD-EF 69
           D ET G+D   DR  +   +   LD +       ++  P       P+A  + GIT    
Sbjct: 11  DYETFGVDPGYDRPAQFAGLRTDLDLNPIGEPLVLYAKPPRDYVPHPDACLITGITPQAA 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------DP 120
           L      +         F ++    + +N+ +FD     A L R  +DP           
Sbjct: 71  LAAGVPEADFIKAILHEFMQRGTCAVGYNSLRFDDTVTRATLYRNLRDPYAREYGDGRSR 130

Query: 121 SRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +ID +  A    P                L  LC+  G  ++    H AL+D      
Sbjct: 131 WDLIDIVRTAYALRPEGLIWPERDDGLPSFRLEDLCEANG--LAQGRAHDALVDVQAT-- 186

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204
           + +  ++   Q        + RF +  K  +  +S
Sbjct: 187 IALARLLKERQPRLFQWLYQQRFKQAVKPLLEPMS 221


>gi|26247090|ref|NP_753130.1| hypothetical protein c1213 [Escherichia coli CFT073]
 gi|26107490|gb|AAN79673.1|AE016758_277 Hypothetical protein c1213 [Escherichia coli CFT073]
 gi|307552894|gb|ADN45669.1| putative exonuclease family protein [Escherichia coli ABU 83972]
          Length = 187

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 10/133 (7%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
           F+  L P       +A  +HGI+++ L   PS++ +  +      ++    I  NA+FD+
Sbjct: 39  FETRLKPT-VVIGTQAAAVHGISEQALCGAPSWTDVVRQLRHAIGDR--PVIIFNARFDI 95

Query: 104 GFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRN----DLNSLCKRYGITISHRSK 157
             +       +   D L+   +   + +A   + +S       L     + G+       
Sbjct: 96  RILKKTAAAHSDPADWLEELTVYCVMELAAGYYGASNRYGTISLACAASQTGLNWEG-QA 154

Query: 158 HGALLDSHLLSDV 170
           H A+ D+ + + V
Sbjct: 155 HSAIADARMTAGV 167


>gi|332161149|ref|YP_004297726.1| exonuclease I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325665379|gb|ADZ42023.1| exonuclease I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 476

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 61/191 (31%), Gaps = 26/191 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           M  KNK     + D ET G     DR  +   V   LD++       V+  P       P
Sbjct: 1   MSDKNKQPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQP 60

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  L +  + +    +    FN      + +N  +FD         R   
Sbjct: 61  EAVMITGITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  G+   H  
Sbjct: 121 DPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVE--HLH 178

Query: 157 KHGALLDSHLL 167
            H A+ D +  
Sbjct: 179 AHDAMSDVYAT 189


>gi|224123908|ref|XP_002330239.1| predicted protein [Populus trichocarpa]
 gi|222871695|gb|EEF08826.1| predicted protein [Populus trichocarpa]
          Length = 147

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 13/116 (11%)

Query: 72  DKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPSRIID 125
           D P    +      +   +        ++AHNA+ FDV F+  E  R + +       +D
Sbjct: 6   DVPRMEELIPILLQYVKSRQKPGGYVMFVAHNARNFDVPFLVNEFGRHHFEIPQNWLFVD 65

Query: 126 TLSIARRKHPS------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           T  +AR           S   L +LCK+Y I    +  H A+ D   LS V  ++ 
Sbjct: 66  TRPLAREVLKMEGLKVTSGTSLEALCKKYNIQFVGK-AHRAMADVTALSLVLQRLT 120


>gi|119192762|ref|XP_001246987.1| hypothetical protein CIMG_00758 [Coccidioides immitis RS]
          Length = 316

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 62/167 (37%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D E  G+    DR   +  V +++++  ++ +  F+          + K+ GIT 
Sbjct: 119 KYIAIDCEMVGVGPDPDRESALARVSIVNFAG-DQVYDSFVRTKEEVTDWRS-KVSGITP 176

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   SF  +  +     + +    I H  K D+  +      +   P    R     
Sbjct: 177 ESMEHARSFEEVQKDVASLLDGR--ILIGHAVKNDLNAL------LLSHPKHDIRDTSLH 228

Query: 128 SIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIK 173
              R+    ++  L  L     G+ I   + H ++ D+     ++ +
Sbjct: 229 PPYRKIAGGAKPRLKILAAELLGLQI-QGAAHSSVEDARATMLLFQR 274


>gi|332148506|dbj|BAK20102.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 247

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           +N   +++ +     + +IDTL + R  +P    + LN+LCK++ I ++    H A+ D+
Sbjct: 1   LNVAYKKLLEVDKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDT 58

Query: 165 HLLSDVYIKMMVGGSQ--INFGFKTNED 190
              + + +KM+   ++  I +  + NE+
Sbjct: 59  EATAYLLLKMLKDAAEKGIQYHDELNEN 86


>gi|264679055|ref|YP_003278962.1| exonuclease-like protein [Comamonas testosteroni CNB-2]
 gi|262209568|gb|ACY33666.1| Exonuclease-like protein [Comamonas testosteroni CNB-2]
          Length = 479

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCP-NGRKNSPEALKLHGITDE-F 69
           D ET G   + DR  +   +   D  ++       +  P N     P++  + GIT +  
Sbjct: 9   DYETFGAQPRYDRPAQFAGIRTDDQLNEIGEPVMWYCQPANDYLPDPQSCLITGITPQRA 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           L++  +     +       +     + +N  +FD       F    +    ++  +    
Sbjct: 69  LEEGVAEHEFAALIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAREWQNGCGR 128

Query: 124 IDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            D L + R  +               +    L  L +  G+   H   H AL D    
Sbjct: 129 WDLLDVVRMVYALRPEGIQWPTKEDGTPSFRLEDLARANGLL--HEQAHDALSDVRAT 184


>gi|332148548|dbj|BAK20123.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 248

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           +N   +++ +     + +IDTL + R  +P    + LN+LCK++ I ++    H A+ D+
Sbjct: 1   LNVAYKKLLEVDKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDT 58

Query: 165 HLLSDVYIKMMVGGSQ--INFGFKTNED 190
              + + +KM+   ++  I +  + NE+
Sbjct: 59  EATAYLLLKMLKDAAEKGIQYHDELNEN 86


>gi|328949709|ref|YP_004367044.1| ATP-dependent DNA helicase, RecQ family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450033|gb|AEB10934.1| ATP-dependent DNA helicase, RecQ family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 1673

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 80/217 (36%), Gaps = 28/217 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67
            +  D+E TG D    +I++I A +     +    F+ F+  P    ++ E     G + 
Sbjct: 4   YVFIDLEATGTDPNQAQILQIVAYK-----EGAAPFEAFVDTPEPVSDTDEIWGFVGFSR 58

Query: 68  E-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRIID 125
           E + + K     +  E  ++  +Q      HN  F D+  +   L+      L P+  +D
Sbjct: 59  EKYDRHKRPLEEVLKELLEYVGDQ--PLAGHNILFYDIPLLERWLRACGL-ALPPTPALD 115

Query: 126 TLSIARRKHPSSR------NDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           TL +A    P+          L  L    +G  +     H ALLD     +V  ++   G
Sbjct: 116 TLRLAHLIFPTPPDERLRGYGLGDLYAYFFGRPLVG--AHDALLDVAANREVARELYRVG 173

Query: 179 SQ--------INFGFKTNEDRFFKEEKKTVPNISLLK 207
            Q        +       E RF   +    P +SL +
Sbjct: 174 KQRVPPPVLALWAHLGLEEARFLGADPPEDPALSLQE 210


>gi|307153762|ref|YP_003889146.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
 gi|306983990|gb|ADN15871.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
          Length = 817

 Score = 69.5 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 31/173 (17%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IV D E        D++ EI  +            Q      GR+              
Sbjct: 7   FIVIDTE------GRDQLREIAIINAEGELIYEAFSQEDPNYYGRR-------------- 46

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            LK KP    I ++F    +E+    I HNA  D+  +    ++++ D  + +    +L 
Sbjct: 47  -LKSKP-LVDILADFQKIASEK--VIICHNANHDIQVLKNSFKKVSIDWQNLNFQ-CSLE 101

Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHR-----SKHGALLDSHLLSDVYIKMM 175
           +A+   P+     L  L K+ G+ ++H+       H A  D+     +Y K+M
Sbjct: 102 LAKNSFPNLPSYSLEYLSKQLGLKVNHKYFNPQQAHAARYDAEFTYQLYRKIM 154


>gi|332148500|dbj|BAK20099.1| DNA polymerase III PolC [Bacillus subtilis]
 gi|332148512|dbj|BAK20105.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 250

 Score = 69.5 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           +N   +++ +     + +IDTL + R  +P    + LN+LCK++ I ++    H A+ D+
Sbjct: 1   LNVAYKKLLEVDKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDT 58

Query: 165 HLLSDVYIKMMVGGSQ--INFGFKTNED 190
              + + +KM+   ++  I +  + NE+
Sbjct: 59  EATAYLLLKMLKDAAEKGIQYHDELNEN 86


>gi|319793918|ref|YP_004155558.1| exodeoxyribonuclease i [Variovorax paradoxus EPS]
 gi|315596381|gb|ADU37447.1| Exodeoxyribonuclease I [Variovorax paradoxus EPS]
          Length = 479

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G   + DR  +  A+    + ++      ++  P      SPEA  + GIT +  
Sbjct: 9   DYETFGAVPRRDRPSQFAAIRTDAELNEIGEPLMIYCKPAPDYLPSPEACLITGITPQVC 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           L+         ++    F++     + +N  +FD       F    +    ++  +    
Sbjct: 69  LERGIPEHDFAAQIERAFSQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYAREWQNDCGR 128

Query: 124 IDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            D L + R  +                    L  L +  G+   H S H AL D    
Sbjct: 129 WDLLDVVRLTYALRPEGIQWPKKEDGKPSFKLEDLARANGLL--HESAHDALSDVRAT 184


>gi|301166629|emb|CBW26205.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 273

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 69/175 (39%), Gaps = 16/175 (9%)

Query: 2   IRKNKMRKIVFDIE-------TTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR 53
           I+ ++M  +  D+E         GL+   DR+ EIGAV    ++++  + +   +    R
Sbjct: 13  IKGSEMLILGIDLEGMNENLVENGLNLAKDRVTEIGAVLWDTEFNQPIKIYSELIHEEDR 72

Query: 54  -KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAK-FDVGFINA 108
              S E  +L GI D  L              +  +   ++    +AHN   +D+  + A
Sbjct: 73  LPISEEIEELTGINDIMLLKYGLQGDEIRMALERLSIIMKKADFIMAHNGPNYDIPMLRA 132

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +R  + P    + ID+ +          N L++L   +G        H A+ D
Sbjct: 133 LFERF-RVPFPEMKWIDSKTDIEFPKRIIANSLSALEHAHGFINP--FPHRAVTD 184


>gi|121594205|ref|YP_986101.1| exonuclease I [Acidovorax sp. JS42]
 gi|120606285|gb|ABM42025.1| Exodeoxyribonuclease I subunit C [Acidovorax sp. JS42]
          Length = 479

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 74/222 (33%), Gaps = 30/222 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G +++ DR  +  AV    + ++      ++  P N     P++  + GIT +  
Sbjct: 8   DYETFGANTRRDRPAQFAAVRTDAELNEIGEPLMIYCRPANDYLPDPQSCLITGITPQLC 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           L+         +             + +N  +FD       F    +    ++  +    
Sbjct: 68  LEKGLPEREFAARIEAELALPGTIGVGYNTIRFDDEITRFMFWRNLMDPYAREWQNQCGR 127

Query: 124 IDTLSIARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            D L + R  +                   L  L K  G  ++H + H AL D       
Sbjct: 128 WDLLDVVRLTYALRPEGIEWPEVDGKPSFRLEHLSKANG--LAHEAAHDALSDVRAT-IA 184

Query: 171 YIKMMVGGSQINFGFKTN---EDRFFKEEKKTVPNISLLKRD 209
             +++   +   F F  +   +DR   E +  +P  +   R 
Sbjct: 185 LARLIRSRNPRLFDFALSLHKKDRVAAELR--LPTTAQEARP 224


>gi|71417705|ref|XP_810633.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70875194|gb|EAN88782.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 394

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 85/245 (34%), Gaps = 33/245 (13%)

Query: 9   KIVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTN--RTFQVFLCPNGRKN-SPEALK 61
            IV D+E T     D+ +  IIE  G +  +     +  R+F+ ++ P      S    K
Sbjct: 85  IIVVDVEATCESNNDNYHHEIIEFPGVLIDVRRGIVDTRRSFRSYVKPWRNPVLSEFCKK 144

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAH---------NAKFDVGFINAEL 110
           L GI+ E + + P    +   F  ++ E       +A          N  ++   +   +
Sbjct: 145 LTGISQEDVDNAPGLPEVVKAFERWYRETIPIGAKVAFAADGPWDFKNFIYEHSILRDHV 204

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                        I T + A   +  +   L+++ +R  +    R  H    D+  ++ +
Sbjct: 205 SFPGI--FYEYLDIRT-TFAHHFNRGAPIKLDAMLRRMRLRFEGR-PHCGFDDAVNIARL 260

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
            + MM  G   +F      D  +     T P    L R +    R+  +        +  
Sbjct: 261 AVAMMRAGCIFDFLIVIPMDDDYHYHLDTYP----LYRREEGSGRLDPD-------VVDD 309

Query: 231 LGKNA 235
           + K+ 
Sbjct: 310 IAKSC 314


>gi|260801297|ref|XP_002595532.1| hypothetical protein BRAFLDRAFT_244216 [Branchiostoma floridae]
 gi|229280779|gb|EEN51544.1| hypothetical protein BRAFLDRAFT_244216 [Branchiostoma floridae]
          Length = 208

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 73/211 (34%), Gaps = 28/211 (13%)

Query: 7   MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTN--------------RTFQVFLCPN 51
              + FD+ETTGLD  +    I + AV   D   T                 F V + P 
Sbjct: 1   QTFVFFDLETTGLDQPRQITEISLAAVR-RDQLLTGTTVPPGGATIPRVMDKFTVCVRP- 58

Query: 52  GRKNSPEALKLHGITDEFLKDKPSFSS-IFSEFWDFFNEQ--NAEWIAHN-AKFDVGFIN 107
            R   P+A ++  +T++ L     F   +        N Q      +AHN  +FD   + 
Sbjct: 59  RRDIHPKAAEITNLTNQTLGKHRVFDEDLVKSVVHLLNRQEPPVCLVAHNGNRFDFPILK 118

Query: 108 AELQRINKDPLDPSR--IIDTLSIARRKHPS--SRNDLNSLCK-RYGITISHRSKHGALL 162
           AEL       L P     +DT+   +  +        L  + +  +G        H A  
Sbjct: 119 AELGESETVDLFPQDVLCVDTMVAIKDLYAGQFKSFSLPKIHETLFGEAPPPEVAHTAEG 178

Query: 163 DSHLLSDVYIKMMVGGSQINFGFKTNEDRFF 193
           D   +  +  K+  G  +I     +N   F 
Sbjct: 179 DVITMVKIVKKL--GAKEILQWMDSNAVSFA 207


>gi|332148508|dbj|BAK20103.1| DNA polymerase III PolC [Bacillus subtilis]
 gi|332148510|dbj|BAK20104.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 256

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           +N   +++ +     + +IDTL + R  +P    + LN+LCK++ I ++    H A+ D+
Sbjct: 1   LNVAYKKLLEVDKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDT 58

Query: 165 HLLSDVYIKMMVGGSQ--INFGFKTNED 190
              + + +KM+   ++  I +  + NE+
Sbjct: 59  EATAYLLLKMLKDAAEKGIQYHDELNEN 86


>gi|291303079|ref|YP_003514357.1| exonuclease RNase T and DNA polymerase III [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572299|gb|ADD45264.1| Exonuclease RNase T and DNA polymerase III [Stackebrandtia
           nassauensis DSM 44728]
          Length = 226

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 19/152 (12%)

Query: 24  DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD-----KPSFSS 78
            RI+    V        +      + P G      A  +HGI+ E  +        + S 
Sbjct: 26  ARIVTAAIVNG------DDVASWLINP-GIDIPAAASNVHGISTEHARANGTEPALALSE 78

Query: 79  IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDPSRIID--TLSIARRKH 134
           I         E++   + + A +D+  ++ EL R +    P +  +++D   L     K 
Sbjct: 79  IGRALTKA-AEEDTPVVVYRAGYDLTLLSHELDRYSLPQVPWERLKVLDPFVLDKKADKF 137

Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
              +  L+++C  Y + +S    H A  D+  
Sbjct: 138 RRGKRTLSAVCTHYDVDLSG--AHSADADARA 167


>gi|145598704|ref|YP_001162780.1| exonuclease I [Yersinia pestis Pestoides F]
 gi|145210400|gb|ABP39807.1| Exodeoxyribonuclease I subunit C [Yersinia pestis Pestoides F]
          Length = 476

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 67/207 (32%), Gaps = 28/207 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           M  KNK     V D ET G     DR  +   V   LD++       ++  P       P
Sbjct: 1   MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQP 60

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  L +  + +    +    F+      + +N  +FD         R   
Sbjct: 61  EAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  G+   H  
Sbjct: 121 DPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVE--HLQ 178

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINF 183
            H A+ D +    + +  +V  +Q   
Sbjct: 179 AHDAMSDVYAT--IAMAKLVKQAQPRL 203


>gi|21959485|gb|AAM86164.1|AE013862_9 exonuclease I [Yersinia pestis KIM 10]
          Length = 497

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 67/207 (32%), Gaps = 28/207 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           M  KNK     V D ET G     DR  +   V   LD++       ++  P       P
Sbjct: 22  MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQP 81

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  L +  + +    +    F+      + +N  +FD         R   
Sbjct: 82  EAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFY 141

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  G+   H  
Sbjct: 142 DPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVE--HLQ 199

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINF 183
            H A+ D +    + +  +V  +Q   
Sbjct: 200 AHDAMSDVYAT--IAMAKLVKQAQPRL 224


>gi|58426647|gb|AAW75684.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 502

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 61/182 (33%), Gaps = 25/182 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV               F+ P +    SP A  +  IT
Sbjct: 26  FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTAIT 85

Query: 67  DEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI- 123
            +  L++  + +  F+   +  +      + +N+ +FD  F+   L R   DP +     
Sbjct: 86  PQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREWRG 145

Query: 124 -------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                  +D L +     P                L  L       +     H AL D +
Sbjct: 146 GNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASA--NDVREGDAHEALSDVY 203

Query: 166 LL 167
             
Sbjct: 204 AT 205


>gi|332148520|dbj|BAK20109.1| DNA polymerase III PolC [Bacillus subtilis]
 gi|332148532|dbj|BAK20115.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 257

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           +N   +++ +     + +IDTL + R  +P    + LN+LCK++ I ++    H A+ D+
Sbjct: 2   LNVAYKKLLEVDKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDT 59

Query: 165 HLLSDVYIKMMVGGSQ--INFGFKTNED 190
              + + +KM+   ++  I +  + NE+
Sbjct: 60  EATAYLLLKMLKDAAEKGIQYHDELNEN 87


>gi|1550617|dbj|BAA12312.1| RNase T [Vibrio alginolyticus]
          Length = 125

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 10/100 (10%)

Query: 1   MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52
           +  K + R    +V D+ET G +++ D ++EI  V L            T    + P  G
Sbjct: 8   LTLKKRFRGYFPVVVDVETAGFNAQTDALLEICTVTLKMDEDGVLHPASTIHFHVEPFEG 67

Query: 53  RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ 90
                EAL+ +GI D +  L+   S      E +    ++
Sbjct: 68  ANLEKEALEFNGIRDPYSPLRGAVSEQEALKEIYKLIRKE 107


>gi|221134673|ref|ZP_03560976.1| exonuclease, RNase T and DNA polymerase III [Glaciecola sp.
           HTCC2999]
          Length = 236

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 70/175 (40%), Gaps = 15/175 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D E + LD    + +  G +E          ++   +   G  +  +   +HG+T 
Sbjct: 35  WLAVDFEYSSLDVSTAKFMSAGWIEGNHTGIDIQSSYYRLIRAQG--DLAQTPIIHGLTP 92

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +        ++     F    +  W+ HNA+ D+G +    +R+ + PL     IDT+
Sbjct: 93  SDIARGVHVRDMYEHICQF--ATSHIWVLHNAQLDMGMLKELSKRL-QQPLPAIVCIDTM 149

Query: 128 SIA-RRKH------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +A  + +      P     L+   +RY   +++   H AL D+    ++++  M
Sbjct: 150 QLALYQLYKKVDVIPKGGVILSKCRERY--ELANAPAHNALSDAMATLELWMAQM 202


>gi|108812583|ref|YP_648350.1| exonuclease I [Yersinia pestis Nepal516]
 gi|229902976|ref|ZP_04518092.1| exonuclease I [Yersinia pestis Nepal516]
 gi|108776231|gb|ABG18750.1| Exodeoxyribonuclease I subunit C [Yersinia pestis Nepal516]
 gi|229679886|gb|EEO75986.1| exonuclease I [Yersinia pestis Nepal516]
          Length = 476

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 67/207 (32%), Gaps = 28/207 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           M  KNK     V D ET G     DR  +   V   LD++       ++  P       P
Sbjct: 1   MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQP 60

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  L +  + +    +    F+      + +N  +FD         R   
Sbjct: 61  EAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  G+   H  
Sbjct: 121 DPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVE--HLQ 178

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINF 183
            H A+ D +    + +  +V  +Q   
Sbjct: 179 AHDAMSDVYAT--IAMAKLVKQAQPRL 203


>gi|51595906|ref|YP_070097.1| exonuclease I [Yersinia pseudotuberculosis IP 32953]
 gi|170024741|ref|YP_001721246.1| exonuclease I [Yersinia pseudotuberculosis YPIII]
 gi|186894995|ref|YP_001872107.1| exonuclease I [Yersinia pseudotuberculosis PB1/+]
 gi|51589188|emb|CAH20808.1| exodeoxyribonuclease I [Yersinia pseudotuberculosis IP 32953]
 gi|169751275|gb|ACA68793.1| Exodeoxyribonuclease I [Yersinia pseudotuberculosis YPIII]
 gi|186698021|gb|ACC88650.1| Exonuclease domain protein [Yersinia pseudotuberculosis PB1/+]
          Length = 476

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 67/207 (32%), Gaps = 28/207 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           M  KNK     V D ET G     DR  +   V   LD++       ++  P       P
Sbjct: 1   MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQP 60

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  L +  + +    +    F+      + +N  +FD         R   
Sbjct: 61  EAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  G+   H  
Sbjct: 121 DPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVE--HLQ 178

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINF 183
            H A+ D +    + +  +V  +Q   
Sbjct: 179 AHDAMSDVYAT--IAMAKLVKQAQPRL 203


>gi|238789860|ref|ZP_04633641.1| Exodeoxyribonuclease I [Yersinia frederiksenii ATCC 33641]
 gi|238722056|gb|EEQ13715.1| Exodeoxyribonuclease I [Yersinia frederiksenii ATCC 33641]
          Length = 476

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 62/194 (31%), Gaps = 27/194 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEF- 69
           D ET G     DR  +   V   LD++       ++  P       PEA+ + GIT +  
Sbjct: 14  DYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCKPADDYLPQPEAVMITGITPQHA 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L +  + +    +    FN      + +N  +FD         R   DP   S       
Sbjct: 74  LANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQGGNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              +D +       P                L  L K  G+   H   H A+ D H    
Sbjct: 134 WDLLDVMRACYALRPEGIVWPENEDGLPSFKLEHLTKANGVE--HLHAHDAMSDVHAT-- 189

Query: 170 VYIKMMVGGSQINF 183
           + +  +V  +Q   
Sbjct: 190 IAMAKLVKQAQPRL 203


>gi|332148502|dbj|BAK20100.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 254

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           +N   +++ +     + +IDTL + R  +P    + LN+LCK++ I ++    H A+ D+
Sbjct: 1   LNVAYKKLLEVDKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDT 58

Query: 165 HLLSDVYIKMMVGGSQ--INFGFKTNED 190
              + + +KM+   ++  I +  + NE+
Sbjct: 59  EATAYLLLKMLKDAAEKGIQYHDELNEN 86


>gi|332148524|dbj|BAK20111.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 256

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           +N   +++ +     + +IDTL + R  +P    + LN+LCK++ I ++    H A+ D+
Sbjct: 2   LNVAYKKLLEVDKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDT 59

Query: 165 HLLSDVYIKMMVGGSQ--INFGFKTNED 190
              + + +KM+   ++  I +  + NE+
Sbjct: 60  EATAYLLLKMLKDAAEKGIQYHDELNEN 87


>gi|331646986|ref|ZP_08348085.1| putative cytoplasmic protein [Escherichia coli M605]
 gi|331044303|gb|EGI16434.1| putative cytoplasmic protein [Escherichia coli M605]
          Length = 382

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 59/172 (34%), Gaps = 25/172 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDEFLK 71
           D E+TGL   +D + E   +        N      +CP    K    A   H IT   ++
Sbjct: 9   DTESTGLSPASDALPETAIISDTGVPLVN----TLICPPDTFKARSAAQAAHCITPAMVR 64

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           DK +     S       +Q+   I +NA FD  F          D L  +R +    +AR
Sbjct: 65  DKFTPDKPASRIRTAVQDQD--VIIYNASFDASF--------PGDLLAGARSVQCCMLAR 114

Query: 132 RKHPSSR---------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +H             + L+          S   KH AL D+     V+  M
Sbjct: 115 ARHVGEWSGWHGDWRLHRLDQAAAAVCFDWSG-DKHRALADARACRAVWQFM 165


>gi|332148516|dbj|BAK20107.1| DNA polymerase III PolC [Bacillus subtilis]
 gi|332148526|dbj|BAK20112.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 255

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164
           +N   +++ +     + +IDTL + R  +P    + LN+LCK++ I ++    H A+ D+
Sbjct: 2   LNVAYKKLLEVDKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDT 59

Query: 165 HLLSDVYIKMMVGGSQ--INFGFKTNED 190
              + + +KM+   ++  I +  + NE+
Sbjct: 60  EATAYLLLKMLKDAAEKGIQYHDELNEN 87


>gi|45441270|ref|NP_992809.1| exonuclease I [Yersinia pestis biovar Microtus str. 91001]
 gi|108806850|ref|YP_650766.1| exonuclease I [Yersinia pestis Antiqua]
 gi|149366477|ref|ZP_01888511.1| exodeoxyribonuclease I [Yersinia pestis CA88-4125]
 gi|161484780|ref|NP_669913.2| exonuclease I [Yersinia pestis KIM 10]
 gi|165924676|ref|ZP_02220508.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939554|ref|ZP_02228099.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|167400240|ref|ZP_02305753.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167421764|ref|ZP_02313517.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167470369|ref|ZP_02335073.1| exodeoxyribonuclease I [Yersinia pestis FV-1]
 gi|218928697|ref|YP_002346572.1| exonuclease I [Yersinia pestis CO92]
 gi|229841541|ref|ZP_04461700.1| exonuclease I [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843652|ref|ZP_04463795.1| exonuclease I [Yersinia pestis biovar Orientalis str. India 195]
 gi|229894245|ref|ZP_04509428.1| exonuclease I [Yersinia pestis Pestoides A]
 gi|45436130|gb|AAS61686.1| exodeoxyribonuclease I [Yersinia pestis biovar Microtus str. 91001]
 gi|108778763|gb|ABG12821.1| Exodeoxyribonuclease I subunit C [Yersinia pestis Antiqua]
 gi|115347308|emb|CAL20203.1| exodeoxyribonuclease I [Yersinia pestis CO92]
 gi|149290851|gb|EDM40926.1| exodeoxyribonuclease I [Yersinia pestis CA88-4125]
 gi|165912470|gb|EDR31102.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923736|gb|EDR40868.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|166960249|gb|EDR56270.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050189|gb|EDR61597.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|229689260|gb|EEO81323.1| exonuclease I [Yersinia pestis biovar Orientalis str. India 195]
 gi|229697907|gb|EEO87954.1| exonuclease I [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229703643|gb|EEO90659.1| exonuclease I [Yersinia pestis Pestoides A]
 gi|320015573|gb|ADV99144.1| exonuclease I [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 476

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 67/207 (32%), Gaps = 28/207 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           M  KNK     V D ET G     DR  +   V   LD++       ++  P       P
Sbjct: 1   MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQP 60

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  L +  + +    +    F+      + +N  +FD         R   
Sbjct: 61  EAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  G+   H  
Sbjct: 121 DPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVE--HLQ 178

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINF 183
            H A+ D +    + +  +V  +Q   
Sbjct: 179 AHDAMSDVYAT--IAMAKLVKQAQPRL 203


>gi|312962237|ref|ZP_07776729.1| exonuclease [Pseudomonas fluorescens WH6]
 gi|311283574|gb|EFQ62163.1| exonuclease [Pseudomonas fluorescens WH6]
          Length = 180

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 61/172 (35%), Gaps = 10/172 (5%)

Query: 9   KIVFDIETT---GLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            ++ D+E T   G     +  +IEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLIIDLEATTDEGGWPVTEMEVIEIGASLVNRQGRELDHFQRFVRPLRRPLLTPFCRQLT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPS 121
            IT   +      + ++  F  +  +  A     A    +D   +  E QR         
Sbjct: 64  HITQANIDAAAPVTEVWPLFERWLGQHQARLEGWASWGDYDRVQLELEWQRHGLASALAD 123

Query: 122 RIIDTL--SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                L    A+ +       LN   +  G+   H  +H AL D+   + + 
Sbjct: 124 TPHVNLKQRFAKARRLDKPLGLNGALQLAGMQF-HGQQHRALEDARNTARLL 174


>gi|162419714|ref|YP_001607449.1| exonuclease I [Yersinia pestis Angola]
 gi|166009382|ref|ZP_02230280.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211647|ref|ZP_02237682.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167424322|ref|ZP_02316075.1| exodeoxyribonuclease I [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|270486761|ref|ZP_06203835.1| exonuclease C-terminal domain protein [Yersinia pestis KIM D27]
 gi|294503532|ref|YP_003567594.1| exodeoxyribonuclease I [Yersinia pestis Z176003]
 gi|162352529|gb|ABX86477.1| exodeoxyribonuclease I [Yersinia pestis Angola]
 gi|165991937|gb|EDR44238.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207418|gb|EDR51898.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167057171|gb|EDR66934.1| exodeoxyribonuclease I [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|262361575|gb|ACY58296.1| exodeoxyribonuclease I [Yersinia pestis D106004]
 gi|262365685|gb|ACY62242.1| exodeoxyribonuclease I [Yersinia pestis D182038]
 gi|270335265|gb|EFA46042.1| exonuclease C-terminal domain protein [Yersinia pestis KIM D27]
 gi|294353991|gb|ADE64332.1| exodeoxyribonuclease I [Yersinia pestis Z176003]
          Length = 487

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 67/207 (32%), Gaps = 28/207 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           M  KNK     V D ET G     DR  +   V   LD++       ++  P       P
Sbjct: 12  MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQP 71

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  L +  + +    +    F+      + +N  +FD         R   
Sbjct: 72  EAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFY 131

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  G+   H  
Sbjct: 132 DPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVE--HLQ 189

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINF 183
            H A+ D +    + +  +V  +Q   
Sbjct: 190 AHDAMSDVYAT--IAMAKLVKQAQPRL 214


>gi|153212250|ref|ZP_01948038.1| exodeoxyribonuclease I [Vibrio cholerae 1587]
 gi|124116628|gb|EAY35448.1| exodeoxyribonuclease I [Vibrio cholerae 1587]
          Length = 474

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPE 58
           M ++++     FD ET G++   DR  +   V   +D++       ++   PN    +PE
Sbjct: 1   MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +       +     +      +  N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIELAKKVKAAQPKL 202


>gi|221066347|ref|ZP_03542452.1| Exodeoxyribonuclease I [Comamonas testosteroni KF-1]
 gi|220711370|gb|EED66738.1| Exodeoxyribonuclease I [Comamonas testosteroni KF-1]
          Length = 479

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 55/178 (30%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCP-NGRKNSPEALKLHGITDE-F 69
           D ET G   + DR  +   +   D  ++       +  P N     P++  + GIT +  
Sbjct: 9   DYETFGAQPRYDRPAQFAGIRTDDQLNEIGEPVMWYCQPANDYLPDPQSCLITGITPQRA 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           L++  +     +       +     + +N  +FD       F         ++  +    
Sbjct: 69  LQEGVAEHEFAALIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLTDPYAREWQNGCGR 128

Query: 124 IDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            D L + R  +               +    L  L +  G+   H   H AL D    
Sbjct: 129 WDLLDVVRMVYALRPDGIQWPTKEDGTPSFKLEDLARANGLL--HEQAHDALSDVRAT 184


>gi|327483926|gb|AEA78333.1| Exodeoxyribonuclease I [Vibrio cholerae LMA3894-4]
          Length = 474

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPE 58
           M ++++     FD ET G++   DR  +   V   +D++       ++   PN    +PE
Sbjct: 1   MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +       +     +      +  N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIELAKKVKAAQPKL 202


>gi|229515610|ref|ZP_04405069.1| exodeoxyribonuclease I [Vibrio cholerae TMA 21]
 gi|229347379|gb|EEO12339.1| exodeoxyribonuclease I [Vibrio cholerae TMA 21]
          Length = 478

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPE 58
           M ++++     FD ET G++   DR  +   V   +D++       ++   PN    +PE
Sbjct: 5   MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE 64

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +       +     +      +  N   + +N+ +FD         R   D
Sbjct: 65  AALITGITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFID 124

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L    GI   H + 
Sbjct: 125 PYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIE--HSNA 182

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 183 HDAMADVIATIELAKKVKAAQPKL 206


>gi|254226438|ref|ZP_04920025.1| exodeoxyribonuclease I [Vibrio cholerae V51]
 gi|125621060|gb|EAZ49407.1| exodeoxyribonuclease I [Vibrio cholerae V51]
          Length = 474

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPE 58
           M ++++     FD ET G++   DR  +   V   +D++       ++   PN    +PE
Sbjct: 1   MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +       +     +      +  N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIELAKKVKAAQPKL 202


>gi|153879658|ref|ZP_02004868.1| exonuclease [Beggiatoa sp. PS]
 gi|152063878|gb|EDN65132.1| exonuclease [Beggiatoa sp. PS]
          Length = 65

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
          D ETTGLD  N  I+EI  ++  + +  N+     + P  +    E + +HGITD+ +K 
Sbjct: 2  DTETTGLD-DNAEIVEIAIIDKEERTLINQ----LVKPT-QPIPNEVIGIHGITDDEVKK 55

Query: 73 KPSFSSIFSE 82
           P+F +++ +
Sbjct: 56 APTFKTVWPK 65


>gi|153826959|ref|ZP_01979626.1| exodeoxyribonuclease I [Vibrio cholerae MZO-2]
 gi|149739207|gb|EDM53479.1| exodeoxyribonuclease I [Vibrio cholerae MZO-2]
          Length = 474

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPE 58
           M ++++     FD ET G++   DR  +   V   +D++       ++   PN    +PE
Sbjct: 1   MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +       +     +      +  N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIELAKKVKAAQPKL 202


>gi|328876923|gb|EGG25286.1| hypothetical protein DFA_03535 [Dictyostelium fasciculatum]
          Length = 369

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 23/173 (13%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K+  +VFD ETTGL+   D+IIEI  + +L+      +F   + P     S E+   HGI
Sbjct: 140 KLVILVFDTETTGLE-FEDQIIEITFINILNG----DSFYGKVKPT-VPLSSESYCAHGI 193

Query: 66  TDEFLKDKPSFSSI---FSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPS 121
           + + L +   + S+      F+  + +     IAHN  FD          +++  P D  
Sbjct: 194 SLKELDNCLEWESLQGKLDSFFQQYIDHKIVIIAHNVTFDRYKLWKMVKDQVHCIPFDKI 253

Query: 122 RIIDTLSIARRKHPSSRND--------LNSLCKRY---GITISHRSKHGALLD 163
             I+++ I     P  + D        L++L + +    I IS R  H +  D
Sbjct: 254 IFINSIEIFLSFGPFKKKDSEKDESMALSNLIEIFSPPSIEISQR--HRSSYD 304


>gi|290508687|ref|ZP_06548058.1| exodeoxyribonuclease I [Klebsiella sp. 1_1_55]
 gi|289778081|gb|EFD86078.1| exodeoxyribonuclease I [Klebsiella sp. 1_1_55]
          Length = 474

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 54/178 (30%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITD-EF 69
           D ET G     DR  +  A+    + +        +  P       P+A+ + GIT  E 
Sbjct: 14  DYETFGTSPSLDRPAQFAAIRTDAELNVIGEPEVFYCKPADDYLPQPQAVMITGITPQEA 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L    + ++      D F       + +N  +FD         R   DP   S       
Sbjct: 74  LAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L    GI   H++ H A+ D +  
Sbjct: 134 WDLLDVMRACYALRPEGITWPENDEGLPSFRLEHLTVANGIE--HQNAHDAMADVYAT 189


>gi|254291686|ref|ZP_04962473.1| exodeoxyribonuclease I [Vibrio cholerae AM-19226]
 gi|150422370|gb|EDN14330.1| exodeoxyribonuclease I [Vibrio cholerae AM-19226]
          Length = 474

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPE 58
           M ++++     FD ET G++   DR  +   V   +D++       ++   PN    +PE
Sbjct: 1   MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +       +     +      +  N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIELAKKVKAAQPKL 202


>gi|53803521|ref|YP_114798.1| exonuclease I [Methylococcus capsulatus str. Bath]
 gi|53757282|gb|AAU91573.1| exodeoxyribonuclease I [Methylococcus capsulatus str. Bath]
          Length = 478

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 67/208 (32%), Gaps = 26/208 (12%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D+ET G D   DRI +   +   L+++       ++  P+      P+A  + GIT ++ 
Sbjct: 11  DLETFGTDPARDRIAQFAGLRTDLEFNPIGPPDVLYCRPSDDMVPYPDACLVTGITPQYA 70

Query: 71  KD-KPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDP----------- 117
            +     S+  +     F       + +N  +FD   +     R   DP           
Sbjct: 71  AELGVPESAFIATIHRIFMRPGTCVLGYNTLRFDDEMLRHAFYRNLYDPYAREWKGGNSR 130

Query: 118 --------LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                   L  +   D +   R    S    L  L    GI   H S H AL D      
Sbjct: 131 WDVIDLARLTQALRPDGIEWPRDSLGSPVFKLERLAAANGIR--HESAHDALSDVRATV- 187

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEK 197
            + +++       F F          E+
Sbjct: 188 AFARLIAERQPRLFQFALESRAKGAVER 215


>gi|291565683|dbj|BAI87955.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 853

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 35/184 (19%)

Query: 1   MIR----KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           M R     N    IV D E        D + E+  V+          +  F+    + + 
Sbjct: 1   MTRDNYHLNTSSFIVLDTE------GRDSLTEVALVDNQGAIL----YHAFV---AKNHP 47

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
              L+LH         + +   I  +  +  + Q    I H+A+ D   +    +++   
Sbjct: 48  EPTLRLH---------QETLLDIVKQVDNLCHNQ--VIICHHAEHDQRILKRSFKQVEIS 96

Query: 117 PLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITI-----SHRSKHGALLDSHLLSDV 170
                + I T  +A+++ P+     L+ LCK   + +       R  H A  D+     +
Sbjct: 97  Y-PNYQFICTCKLAKKQLPNLPDYGLSYLCKTLDLRLNRQRFDDRHAHSASYDAQFTYQL 155

Query: 171 YIKM 174
           Y  +
Sbjct: 156 YSYL 159


>gi|327479722|gb|AEA83032.1| exonuclease I [Pseudomonas stutzeri DSM 4166]
          Length = 477

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 53/177 (29%), Gaps = 24/177 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG+    DR +++  +   +   +      ++  P       P A  + GIT   L
Sbjct: 9   DFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLVTGITPAVL 68

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           + K    +          +        +N+ +FD       L R   DP           
Sbjct: 69  QQKGMCEAQFVHHLHRELSTPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDSHLL 167
              ID +  A    P               L  L    G  + H + H AL D    
Sbjct: 129 WDLIDLVRTAYALRPEGIGWPEDDGRVTLKLERLSAANG--LEHLNAHDALSDVRAT 183


>gi|261326769|emb|CBH09742.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 397

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 80/223 (35%), Gaps = 33/223 (14%)

Query: 6   KMRKIVFDIETTGL-----DSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEA 59
             R   FD+E TG      D   + I+E G          ++ F   + P NGR  SPE 
Sbjct: 84  PFRLFTFDLEFTGPPVFGPDGPTEDIMEFGFYSPA----HDKVFSCLVRPSNGRCVSPEV 139

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFFN----------EQNAEWIAHNAKF-DVGFIN 107
             L  IT + L +D   F   +++  DF N          E+    ++H  K  DV  I 
Sbjct: 140 TTLTHITQKMLEEDGLPFRDAWAKVLDFLNTPEPQELPGAEKRLLVLSHGGKLADVSLIK 199

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN---------SLCKRYGITISHRSKH 158
             L+  + +        DT  + R  H      L+          L +   I  +    H
Sbjct: 200 WTLEASDMELPSNIIFGDTFHLIRDAHRRRPVTLDKHPPTWGLSDLVQWLRIPPTL-PAH 258

Query: 159 GALLDSHLLSD-VYIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A  D+ +  D +Y  +   G +     +    RFF  E K V
Sbjct: 259 RAGNDAKMTWDALYHTLERYGDEDLTPREQLVSRFFDVEAKQV 301


>gi|77460659|ref|YP_350166.1| exonuclease I [Pseudomonas fluorescens Pf0-1]
 gi|77384662|gb|ABA76175.1| exodeoxyribonuclease I [Pseudomonas fluorescens Pf0-1]
          Length = 476

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 57/178 (32%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ + DR +++  +    + ++ +    ++  P+      P A  + GIT   L
Sbjct: 8   DYETTGINPRCDRPLQVAGIRTDHELNEIDAPVNLYCQPSEDILPHPAACAITGITPSRL 67

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            ++  S +   +               +N  +FD       L R   DP           
Sbjct: 68  AEQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREWQGGNSR 127

Query: 124 ---IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLL 167
              ID +  A    P                L  L     I   H + H AL D    
Sbjct: 128 WDLIDVVRAAYALRPDGLVWPTDDEGKVTLKLERLTAANNID--HGNAHEALSDVRAT 183


>gi|297814576|ref|XP_002875171.1| hypothetical protein ARALYDRAFT_346774 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297321009|gb|EFH51430.1| hypothetical protein ARALYDRAFT_346774 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 267

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 19/177 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS--KTNRTFQVFLCPNGRKNSPEAL 60
           + N  R +  D+E      + + +IE  AV ++D    +    ++ F+ P+    S    
Sbjct: 64  KPNADRLLFLDLE-----FEKEDVIEF-AVLIVDSKTLEAVYNYETFIKPSDGVVSKFRD 117

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-- 117
           + +GIT   L+  P+F  +  + +         WI HN  + D+  +    +R N     
Sbjct: 118 RPNGITKAKLQRAPTFLDVHEDIFKVL--HGGIWIGHNIIRTDIPLLLKMYRRHNLPEKR 175

Query: 118 -LDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                  IDTL               LN L K + +       H +L D  L   V+
Sbjct: 176 IPSFRYKIDTLKWLEGNFLGKTQGLKLNELGKFFKLE---EQTHRSLEDCDLNLQVF 229


>gi|297814554|ref|XP_002875160.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297320998|gb|EFH51419.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 266

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 19/177 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS--KTNRTFQVFLCPNGRKNSPEAL 60
           + N  R +  D+E      + + +IE  AV ++D    +    ++ F+ P+    S    
Sbjct: 63  KPNADRLLFLDLE-----FEKEDVIEF-AVLIVDSKTLEAVYNYETFIKPSDGVVSKFRD 116

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-- 117
           + +GIT   L+  P+F  +  + +         WI HN  + D+  +    +R N     
Sbjct: 117 RPNGITKAKLQRAPTFLDVHEDIFKVL--HGGIWIGHNIIRTDIPLLLKMYRRHNLPEKR 174

Query: 118 -LDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                  IDTL               LN L K + +       H +L D  L   V+
Sbjct: 175 IPSFRYKIDTLKWLEGNFLGKTQGLKLNELGKFFKLE---EQTHRSLEDCDLNLQVF 228


>gi|254451818|ref|ZP_05065255.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
 gi|198266224|gb|EDY90494.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
          Length = 500

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 34/234 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNR-TFQVFLCPNGRKNSPEALKLHG 64
           M  + +D+ETTGL    D+ ++  A+    ++ + +R   +  L P+    SP+AL +  
Sbjct: 1   MDFVFYDLETTGLSPAFDQPLQFAAIYTDENFVEKDRVNIRCRLAPHILP-SPQALVVTR 59

Query: 65  ITDEFLKDK--PSFSSIFSEFWDFF-NEQNAEWIAHNA-KFDVGFINAELQR-------- 112
           +T + L D   PS      +  +       A W+ +N  KFD   +     R        
Sbjct: 60  VTPDQLTDPSLPSLFEFSQQVAELTERWAPAIWVGYNTIKFDEEVLRQTFYRNLSPNVYA 119

Query: 113 ------INKDPLD-----PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
                    D L        R  D L+  +         L+ L    G      + H AL
Sbjct: 120 TQFNGNTRFDILPAVYAAYVREPDLLAWPKDDTGRRSFKLDRLAPANG--FKAHNAHDAL 177

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            D      ++I  ++         +  ++      +  + +     R   L TR
Sbjct: 178 GDVEAT--IHIARLIAMRSPALWSELLDNAHKARVQAKLESF----RPYELVTR 225


>gi|326474019|gb|EGD98028.1| RNA exonuclease 4 [Trichophyton tonsurans CBS 112818]
 gi|326478216|gb|EGE02226.1| RNA exonuclease [Trichophyton equinum CBS 127.97]
          Length = 308

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 63/167 (37%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G+    DR   +  V +++Y+  ++ +  ++ P        +  + GI  
Sbjct: 115 KYVAIDCEMVGVGPDPDRDSALARVSIVNYNG-DQVYDSYVRPKEMVTDWRS-AISGILP 172

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +  S  ++  +     + +    I H  + D+  +   L    +D  D SR     
Sbjct: 173 KHMVEARSLEAVQQDVAKLLDGR--ILIGHAVRNDLEALL--LSHSKRDIRDTSRY---- 224

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I   S H ++ D+     ++ +
Sbjct: 225 PPYRKLAGGGSPKLKILASELLGLEI-QGSAHSSVEDARATMMLFRR 270


>gi|297711385|ref|XP_002832336.1| PREDICTED: three prime repair exonuclease 2-like [Pongo abelii]
          Length = 313

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 78/226 (34%), Gaps = 35/226 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQ-VFLCP-----------NGRK 54
            +  D+E TGL S    I E+   AV         R      + P             R 
Sbjct: 87  FVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPERDESGALVLPRVLDKLTLCMCPERP 146

Query: 55  NSPEALKLHGITDEFLKDKPS--FS-SIFSEFWDFFNEQNAE--WIAHN-AKFDVGFINA 108
            + +A ++ G++ E L       F  ++      F + Q      +AHN   +D   + A
Sbjct: 147 FTAKASEITGLSSEGLARCRKSGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCA 206

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKH 158
           EL+R+       +  +DTL   R    +  +           L SL  RY       + H
Sbjct: 207 ELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRY-FRAEPSAAH 265

Query: 159 GALLDSHLLSDVYIK----MMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A  D H L  +++     ++    +   G+   E  +   +  ++
Sbjct: 266 SAEGDVHTLLLIFLHRAAELLAWADEQACGWAHIEPMYLPPDDPSL 311


>gi|288934485|ref|YP_003438544.1| exodeoxyribonuclease I [Klebsiella variicola At-22]
 gi|288889194|gb|ADC57512.1| Exodeoxyribonuclease I [Klebsiella variicola At-22]
          Length = 474

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 54/178 (30%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITD-EF 69
           D ET G     DR  +  A+    + +        +  P       P+A+ + GIT  E 
Sbjct: 14  DYETFGTSPSLDRPAQFAAIRTDAELNVIGEPEVFYCKPADDYLPQPQAVMITGITPQEA 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L    + ++      D F       + +N  +FD         R   DP   S       
Sbjct: 74  LAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L    GI   H++ H A+ D +  
Sbjct: 134 WDLLDVMRACYALRPEGITWPENDEGLPSFRLEHLTVANGIE--HQNAHDAMADVYAT 189


>gi|126330776|ref|XP_001373310.1| PREDICTED: similar to Three prime histone mRNA exonuclease 1
           [Monodelphis domestica]
          Length = 432

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 18/200 (9%)

Query: 9   KIVFDIETT---GLDSK-NDRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             V D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 213 ICVIDFEATCEEGNPPEFTHEIIEFPIVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 272

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVG-FINAELQ--RIN 114
            GIT + +    +F  +     ++             I  +  +D+  F+N + Q  R+ 
Sbjct: 273 TGITQDMVDRAATFPQVLRNVVEWMKLKELGTTYKYSILTDGSWDMSKFLNIQCQISRL- 331

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + P    + I+        +   RN   L  + ++ G++   R  H  L DS  ++ + +
Sbjct: 332 RYPSFAKKWINIRKSYGNFYKVPRNQTKLTIMLEKLGMSYDGR-PHSGLDDSKNIARIAV 390

Query: 173 KMMVGGSQINFGFKTNEDRF 192
           +M+  G ++    K +  + 
Sbjct: 391 RMLRDGCELRVNEKMHGGQL 410


>gi|238784349|ref|ZP_04628360.1| Exodeoxyribonuclease I [Yersinia bercovieri ATCC 43970]
 gi|238714777|gb|EEQ06778.1| Exodeoxyribonuclease I [Yersinia bercovieri ATCC 43970]
          Length = 476

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 61/191 (31%), Gaps = 26/191 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           M  KNK     + D ET G     DR  +   V   LD++       ++  P       P
Sbjct: 1   MSDKNKQPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCAPADDYLPQP 60

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  L +  + +    +    FN      + +N  +FD         R   
Sbjct: 61  EAVMITGITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L +  G+   H  
Sbjct: 121 DPYAYSWQGGNSRWDLLDVMRACYALRPEGIIWPENEDGLPSFKLEHLTRANGVE--HLH 178

Query: 157 KHGALLDSHLL 167
            H A+ D H  
Sbjct: 179 AHDAMSDVHAT 189


>gi|49480343|ref|YP_038931.1| sporulation inhibitor KapD [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118480004|ref|YP_897155.1| sporulation inhibitor KapD [Bacillus thuringiensis str. Al Hakam]
 gi|229094008|ref|ZP_04225095.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-42]
 gi|229187151|ref|ZP_04314297.1| Sporulation inhibitor KapD [Bacillus cereus BGSC 6E1]
 gi|49331899|gb|AAT62545.1| sporulation inhibitor [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|118419229|gb|ABK87648.1| sporulation inhibitor [Bacillus thuringiensis str. Al Hakam]
 gi|228596320|gb|EEK53994.1| Sporulation inhibitor KapD [Bacillus cereus BGSC 6E1]
 gi|228689392|gb|EEL43208.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-42]
          Length = 207

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 65/189 (34%), Gaps = 20/189 (10%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            ++ R +  D E T         G   +   IIE+G V ++   K   T+   + P    
Sbjct: 1   MDEQRFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSAHVRPKTFP 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +    K  GI  E +    SF  +  +  ++  +     +      D+  +    ++ 
Sbjct: 57  SLTDRCKKFLGIKQEVVDKGISFLELVEKLAEYEKKCKPTIVTW-GNMDMKVLKHNCEKA 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             D     +  D     ++     RN   L    + YG  +     H AL D+    +++
Sbjct: 116 EVDFPFLGQCRDLSLEYKKFF-GERNQTGLWKAIEAYG-KVGTGKHHCALDDAMTTYNIF 173

Query: 172 IKMMVGGSQ 180
            K++    +
Sbjct: 174 -KLVEKDKE 181


>gi|260901800|ref|ZP_05910195.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ4037]
 gi|308108118|gb|EFO45658.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ4037]
          Length = 473

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 69/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFL-CPNGRKNSPE 58
           M + N+     FD ET G +   DR  +   V    +++       ++   P     SPE
Sbjct: 1   MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +  +++  S     ++     ++     + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKAMQEGLSEPEFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L  + GI   H + 
Sbjct: 121 PYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVKNGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIEMAKKVKAAQPKL 202


>gi|88812259|ref|ZP_01127510.1| putative DNA polymerase III epsilon chain [Nitrococcus mobilis
           Nb-231]
 gi|88790510|gb|EAR21626.1| putative DNA polymerase III epsilon chain [Nitrococcus mobilis
           Nb-231]
          Length = 186

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 11/175 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  +    G D    R++EIG VE+ D   T R+F  +  P GR     AL+  G++ E
Sbjct: 4   YLALEAVVVGDDPTTSRVVEIGCVEMHDDHPTGRSFHSYANP-GRDLDVAALQAKGLSTE 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            L DKP F  I         ++     +AE ++   + ++  +  +L+            
Sbjct: 63  ALADKPRFGDIAYGLICVIRDRPVLVLDAERVS-AIEREMARVVEQLKPAGWSGEYRLDQ 121

Query: 124 ID---TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +     LS   +        +   CK+Y +    R+  G+L  +    +++  M+
Sbjct: 122 VCELSVLSQIGQAMGQEDTSIEGFCKQYVLAAPQRAG-GSLAVARFTGNLWQSML 175


>gi|270284496|ref|ZP_05966220.2| exonuclease family protein [Bifidobacterium gallicum DSM 20093]
 gi|270277009|gb|EFA22863.1| exonuclease family protein [Bifidobacterium gallicum DSM 20093]
          Length = 249

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 65/169 (38%), Gaps = 14/169 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
               D+ T      +D +IE+ A+ +       +  +  +  +G     +     G+TD 
Sbjct: 81  YCAIDVIT--HSPDSDELIELAAIRVRSGKPVGQ-METLVAQSG-PLPQDVAARTGLTDA 136

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN--AKFDVGFINAELQRINKDPLDPSRIIDT 126
            L  +PS      +F  F    N  +IA N        F+    +R +  P+  + +ID 
Sbjct: 137 ALAGQPSVKQAIEQFLSFVG--NDTFIAPNVGRMQTELFL---AERASGVPMHRNILIDP 191

Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L + ++ +P    + +N+L  R G+  +  +   AL         Y  +
Sbjct: 192 LMLEQQMYPGDDTSSINALMNRAGLMEAPAT--RALTACKQTVACYRWL 238


>gi|307546461|ref|YP_003898940.1| exonuclease I [Halomonas elongata DSM 2581]
 gi|307218485|emb|CBV43755.1| exonuclease I [Halomonas elongata DSM 2581]
          Length = 506

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 56/181 (30%), Gaps = 25/181 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G D + DR  +  A+    D+++     ++F  P       P+A  + GIT +  
Sbjct: 25  DYETFGADPRRDRPSQFAAIRTDADFNEIGEPIELFCKPADDYLPHPQACLITGITPQQA 84

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           K +    +          +E     + +N  +FD         R   DP           
Sbjct: 85  KRRGLPEAEFAGRVQAAMSEPGTCALGYNNLRFDDEVGRHLFYRNLIDPYAREWQNGNSR 144

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              ID +       P                L  L    GI   H   H AL D     +
Sbjct: 145 WDLIDVVRAFHALRPDGITWPTRDDGTPSFKLEDLTAANGIE--HAGAHDALADVRATIE 202

Query: 170 V 170
           +
Sbjct: 203 L 203


>gi|86146813|ref|ZP_01065133.1| exonuclease I [Vibrio sp. MED222]
 gi|218709702|ref|YP_002417323.1| exonuclease I [Vibrio splendidus LGP32]
 gi|85835463|gb|EAQ53601.1| exonuclease I [Vibrio sp. MED222]
 gi|218322721|emb|CAV18897.1| Exodeoxyribonuclease I [Vibrio splendidus LGP32]
          Length = 474

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 60/201 (29%), Gaps = 25/201 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PE 58
           M   N+     FD ET G+    DR  +   V    D++       ++  P       PE
Sbjct: 1   MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  +  IT +             ++        N   + +N+ +FD         R   D
Sbjct: 61  AALITRITPQKAASQGLPEPEFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI-----IDTLSIARRKH---PSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S        D L + R  H   P                L  L    GI   H + 
Sbjct: 121 PYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYPSFKLEHLSVANGIE--HENA 178

Query: 158 HGALLDSHLLSDVYIKMMVGG 178
           H A+ D     ++  K+    
Sbjct: 179 HDAMADVIATIELAKKLKAAQ 199


>gi|229087422|ref|ZP_04219556.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-44]
 gi|228695844|gb|EEL48695.1| Sporulation inhibitor KapD [Bacillus cereus Rock3-44]
          Length = 207

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 18/188 (9%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            ++ + I  D E T         G   +   IIE+G V +++      T+  ++ P    
Sbjct: 1   MDEQQFIFLDFEFTMPQNRKKPKGFFPE---IIEVGLVSVVN-CVVEDTYASYVRPETFS 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +    K  GI  E +    SF  +  +   +        +      D+  +    + +
Sbjct: 57  CLTERCKKFLGIKQEAVDGGISFLELVEKLAQYEKRCQTTIVTW-GNMDMKVLKHNCEAV 115

Query: 114 NKDPLDPSRIID-TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                      D +L   R     ++  L    + YG  +     H AL D+    +++ 
Sbjct: 116 GVTFPFSGECRDLSLEYKRFFGERNQTGLWKAIEAYG-KVGTGKHHCALDDAMTTYNIF- 173

Query: 173 KMMVGGSQ 180
           K++    +
Sbjct: 174 KLVEKDKE 181


>gi|189235963|ref|XP_969322.2| PREDICTED: similar to p15-2a protein [Tribolium castaneum]
          Length = 292

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 20/142 (14%)

Query: 9   KIVFDIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQ-----------VFLCPNGRK 54
            + FD+ETTGL    +   RI E  AV +       +T Q                  R 
Sbjct: 7   FVFFDLETTGLPKFEENRTRITEFCAVAVRADHIGLQTAQKCKLPRVQSKLSLCFNPARA 66

Query: 55  NSPEALKLHGITDEFLKDKPSFSS----IFSEFWDFFNEQNAEWIAHN-AKFDVGFINAE 109
             P+A KL G+++E L+ +  FSS    +   + D  NE+    +AHN  +FD   + AE
Sbjct: 67  ICPQATKLTGLSNELLEHQAHFSSQTLNVIKNWLD-VNEKPICLVAHNGNEFDFPILRAE 125

Query: 110 LQRINKDPLDPSRIIDTLSIAR 131
           ++   ++  +    +D++   +
Sbjct: 126 IENTGENLPEDILCLDSIIAFK 147


>gi|146281544|ref|YP_001171697.1| exonuclease I [Pseudomonas stutzeri A1501]
 gi|145569749|gb|ABP78855.1| exodeoxyribonuclease I [Pseudomonas stutzeri A1501]
          Length = 477

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 53/177 (29%), Gaps = 24/177 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG+    DR +++  +   +   +      ++  P       P A  + GIT   L
Sbjct: 9   DFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLVTGITPAVL 68

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           + K    +          +        +N+ +FD       L R   DP           
Sbjct: 69  QQKGMCEAQFVHHLHRELSTPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDSHLL 167
              ID +  A    P               L  L    G  + H + H AL D    
Sbjct: 129 WDLIDLVRTAYALRPEGIGWPEDDGRVTLKLERLSAANG--LEHLNAHDALSDVRAT 183


>gi|89095382|ref|ZP_01168297.1| exodeoxyribonuclease I [Oceanospirillum sp. MED92]
 gi|89080350|gb|EAR59607.1| exodeoxyribonuclease I [Oceanospirillum sp. MED92]
          Length = 488

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 63/181 (34%), Gaps = 25/181 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G D K D  ++   +   ++ +       V+  P+  +   PEA  + GIT +  
Sbjct: 12  DYETFGADPKRDWPVQFAGIRTDEHLNVIEEPLMVYCKPSDDQLPYPEACLITGITPQKA 71

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------DP 120
            D+       F++  +         + +N+ +FD       L R   DP           
Sbjct: 72  MDEGLCEADFFAKIHEQLARPGTCGVGYNSIRFDDEVTRYGLYRNFFDPYAREWQNGCSR 131

Query: 121 SRIIDTLSIARRKHPSS----RN-------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             IID L + R   P      +         L  L    GI   H   H AL D +   +
Sbjct: 132 WDIIDMLRLTRTLRPEGIVWPKYEDGTPSLRLEDLTVANGID--HGHAHDALSDVYATIE 189

Query: 170 V 170
           +
Sbjct: 190 M 190


>gi|228988155|ref|ZP_04148253.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771566|gb|EEM20034.1| Sporulation inhibitor KapD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 207

 Score = 69.1 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 20/189 (10%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            ++ + +  D E T         G   +   IIE+G V ++   K   T+   + P    
Sbjct: 1   MDEQQFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSAHVRPKTFP 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +    K  GI  E +    SF  +  +  ++        +      D+  +    ++ 
Sbjct: 57  SLTDRCKKFLGIKQEVVDKGISFPELVEKLAEYEKRCKPTIVTW-GNMDMKVLKHNCEKA 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             D     +  D     ++     RN   L    + YG  +     H AL D+    +++
Sbjct: 116 GVDFPFLGQCRDLSLEYKKFF-GERNQTGLWKAIEAYG-KVGTGKHHCALDDAMTTYNIF 173

Query: 172 IKMMVGGSQ 180
            K++    +
Sbjct: 174 -KLVEKDKE 181


>gi|327264247|ref|XP_003216926.1| PREDICTED: three prime repair exonuclease 2-like [Anolis
           carolinensis]
          Length = 227

 Score = 69.1 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 27/192 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-----------------KTNRTFQVFLC 49
              +  DIETTGL     R+ E+    +   S                 +      + + 
Sbjct: 8   QTFVFLDIETTGLPRDWPRMAELCLFAVHRRSLLLSLPNDALTPQELLPRIIDKLTLCID 67

Query: 50  PNGRKNSPEALKLHGITDEFLKD--KPSF-SSIFSEFWDFFNEQNAE--WIAHNAK-FDV 103
           P  +  +P A ++ G++++ L++  K    S++      F   Q      +AHN   FD 
Sbjct: 68  PQ-KPFTPGAEEITGLSNQNLEENCKQDLNSAVVEALRGFLCRQAGPVCLVAHNGLGFDF 126

Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGAL 161
             ++ ELQR+          +DTL   R     +     L ++ + +      RS H A 
Sbjct: 127 PLLHTELQRVGTKLSLDMGCLDTLLALRALVKGAHGGYQLGNMYRYFYGQDPVRS-HSAE 185

Query: 162 LDSHLLSDVYIK 173
            D   L  V++ 
Sbjct: 186 GDVITLLLVFLA 197


>gi|237732065|ref|ZP_04562546.1| exonuclease I [Citrobacter sp. 30_2]
 gi|226907604|gb|EEH93522.1| exonuclease I [Citrobacter sp. 30_2]
          Length = 474

 Score = 69.1 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 58/178 (32%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G     DR  +  A+    D++        +  P       PEA+ + GIT +  
Sbjct: 14  DYETFGTHPALDRPAQFAAIRTDNDFNIIGEPEVFYCKPADDYLPQPEAVLITGITPQEA 73

Query: 71  KDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI----- 123
           ++K  + ++  +     F   +      +N +FD       L R   DP   S       
Sbjct: 74  REKGENEAAFAARIHALFTVPKTCILGYNNVRFDDEVTRNILYRNFYDPYAWSWQNDNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L K  GI   H + H A+ D +  
Sbjct: 134 WDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HTNAHDAMADVYAT 189


>gi|300857574|ref|YP_003782557.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685028|gb|ADK27950.1| DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 348

 Score = 69.1 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +   I+T+G+     R+I + AV   +  +    F   + P     +P    LHG+
Sbjct: 19  RAPYVALSIQTSGIHPSTSRLITVDAVTFTEDGEETDHFHAVINPGD---NPGPFHLHGL 75

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           + E +     FS I        + +      HN  +  GF+ +E +R
Sbjct: 76  SREEIAQGKKFSHILKPLGKLIDGRTLIL--HNTPYTWGFLVSESRR 120


>gi|332148546|dbj|BAK20122.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
          Length = 233

 Score = 68.7 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + +IDTL + R  +P    + LN+LCK++ I ++    H A+ D+   + + +KM+   +
Sbjct: 5   NPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKMLKDAA 62

Query: 180 Q--INFGFKTNED 190
           +  I +  + NE+
Sbjct: 63  EKGIQYHDELNEN 75


>gi|332531005|ref|ZP_08406927.1| exonuclease I [Hylemonella gracilis ATCC 19624]
 gi|332039566|gb|EGI75970.1| exonuclease I [Hylemonella gracilis ATCC 19624]
          Length = 488

 Score = 68.7 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 55/182 (30%), Gaps = 29/182 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G++ + DR  +   +    D ++      ++  P +     P A  L GIT +  
Sbjct: 9   DYETFGVNPRRDRPSQFAGIRTDADLNEIGEPVMLYCRPADDYLPDPGACLLTGITPQTC 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L+         +       +     + +N  +FD         R   DP           
Sbjct: 69  LEHGVPEHEFAARIEHELAQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYAREWQNECSR 128

Query: 124 ---IDTLSIARRKHPSS---------------RNDLNSLCKRYGITISHRSKHGALLDSH 165
              +D + + R   P                    L  L    G  +SH + H AL D  
Sbjct: 129 WDLLDVVRLCRALRPEGIEWPMHREGEMKGKPSFKLEHLTAANG--LSHEAAHDALSDVR 186

Query: 166 LL 167
             
Sbjct: 187 AT 188


>gi|308187438|ref|YP_003931569.1| exodeoxyribonuclease I [Pantoea vagans C9-1]
 gi|308057948|gb|ADO10120.1| exodeoxyribonuclease I [Pantoea vagans C9-1]
          Length = 475

 Score = 68.7 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 53/178 (29%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G     DR  +   +    +++        +  P       PEA+ + GIT +  
Sbjct: 14  DYETFGTSPSRDRPAQFAGLRTDSEFNPVGEPEVFYCRPPDDYLPQPEAVMITGITPQIA 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           +      +         F  +    + +N  +FD         R   DP   +       
Sbjct: 74  MSRGVIEAEFAERIHKLFTTEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGWAWQNGNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L K  G+  +H + H A+ D +  
Sbjct: 134 WDLLDVMRACYALRPDGINWPENEEGFPSFRLEHLTKANGV--AHENAHDAMSDVYAT 189


>gi|290984185|ref|XP_002674808.1| predicted protein [Naegleria gruberi]
 gi|284088400|gb|EFC42064.1| predicted protein [Naegleria gruberi]
          Length = 304

 Score = 68.7 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 27/177 (15%)

Query: 10  IVFDIETTGLD---SKNDRIIEIGAVELLDYSKTNRTFQV--FLCPNGRKNSPEALKLHG 64
           ++ D ETT L      +  I  I           +R      ++ P   K   +A KL G
Sbjct: 91  LILDFETTDLQTRAPTDCYIYNIS---------KDRFLSFPKYILP-RVKILRDAEKLTG 140

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA--ELQRINKDPL---- 118
           IT+E +++            DF  +++    AHNA FD   ++      R+N        
Sbjct: 141 ITNELVQNGTKEMEAVKLIVDFLPKKSLIL-AHNAPFDKSVLHRAFNYWRMNNSKTIDGL 199

Query: 119 --DPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                  +DT+ I ++     +N   L ++ ++     S  ++H A  D   L ++ 
Sbjct: 200 KNSHIIFLDTIPILKKALKLEKNQCKLGNIYQQL-FRKSIENQHTAAADVIALKEIL 255


>gi|84623964|ref|YP_451336.1| exonuclease I [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|161898991|ref|YP_201069.2| exonuclease I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367904|dbj|BAE69062.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 481

 Score = 68.7 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 61/182 (33%), Gaps = 25/182 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV               F+ P +    SP A  +  IT
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTAIT 64

Query: 67  DEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI- 123
            +  L++  + +  F+   +  +      + +N+ +FD  F+   L R   DP +     
Sbjct: 65  PQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREWRG 124

Query: 124 -------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                  +D L +     P                L  L       +     H AL D +
Sbjct: 125 GNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASA--NDVREGDAHEALSDVY 182

Query: 166 LL 167
             
Sbjct: 183 AT 184


>gi|332148534|dbj|BAK20116.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
          Length = 230

 Score = 68.7 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + +IDTL + R  +P    + LN+LCK++ I ++    H A+ D+   + + +KM+   +
Sbjct: 1   NPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKMLKDAA 58

Query: 180 Q--INFGFKTNED 190
           +  I +  + NE+
Sbjct: 59  EKGIQYHDELNEN 71


>gi|332148522|dbj|BAK20110.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 252

 Score = 68.7 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + +IDTL + R  +P    + LN+LCK++ I ++    H A+ D+   + + +KM+   +
Sbjct: 12  NPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKMLKDAA 69

Query: 180 Q--INFGFKTNED 190
           +  I +  + NE+
Sbjct: 70  EKGIQYHDELNEN 82


>gi|322821637|gb|EFZ27903.1| hypothetical protein TCSYLVIO_5871 [Trypanosoma cruzi]
          Length = 379

 Score = 68.7 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 85/245 (34%), Gaps = 33/245 (13%)

Query: 9   KIVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTN--RTFQVFLCPNGRKN-SPEALK 61
            IV D+E T     D+ +  IIE  G +  +     +  R+F+ ++ P      S    K
Sbjct: 70  IIVVDVEATCESNNDNYHHEIIEFPGVLIDVRRGIVDKRRSFRSYVKPWRNPVLSEFCKK 129

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAH---------NAKFDVGFINAEL 110
           L GI+ E + + P    +   F  ++ E       +A          N  ++   +   +
Sbjct: 130 LTGISQEDVDNAPGLPDVVKAFERWYRETIPIGAKVAFAADGPWDFKNFIYEHSILRDHV 189

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                        I T + A   +  +   L+++ +R  +    R  H    D+  ++ +
Sbjct: 190 SFPGI--FYEYLDIRT-TFAHHFNRGAPIKLDAMLRRMRLRFEGR-PHCGFDDAVNIARL 245

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230
            + MM  G   +F      D  +     T P    L R +    R+  +        +  
Sbjct: 246 AVAMMRAGCIFDFLIVIPMDDDYHYHLDTYP----LYRREEGSGRLDPD-------VVDD 294

Query: 231 LGKNA 235
           + K+ 
Sbjct: 295 IAKSC 299


>gi|332148518|dbj|BAK20108.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 251

 Score = 68.7 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + +IDTL + R  +P    + LN+LCK++ I ++    H A+ D+   + + +KM+   +
Sbjct: 12  NPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKMLKDAA 69

Query: 180 Q--INFGFKTNED 190
           +  I +  + NE+
Sbjct: 70  EKGIQYHDELNEN 82


>gi|332148528|dbj|BAK20113.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 253

 Score = 68.7 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + +IDTL + R  +P    + LN+LCK++ I ++    H A+ D+   + + +KM+   +
Sbjct: 14  NPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKMLKDAA 71

Query: 180 Q--INFGFKTNED 190
           +  I +  + NE+
Sbjct: 72  EKGIQYHDELNEN 84


>gi|332148504|dbj|BAK20101.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 253

 Score = 68.7 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + +IDTL + R  +P    + LN+LCK++ I ++    H A+ D+   + + +KM+   +
Sbjct: 15  NPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKMLKDAA 72

Query: 180 Q--INFGFKTNED 190
           +  I +  + NE+
Sbjct: 73  EKGIQYHDELNEN 85


>gi|218437100|ref|YP_002375429.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7424]
 gi|218169828|gb|ACK68561.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7424]
          Length = 838

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 65/208 (31%), Gaps = 36/208 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M R+     IV D E          + EI  V           F       G+ +S    
Sbjct: 1   MSRELTDNFIVVDTE------GKHLLREIAIVNSQ-GQLIYEAFAQ----EGQNDS---- 45

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQRINKDPLD 119
              GI      +      I     DF    ++  I  HNA  D   +    +++  D   
Sbjct: 46  ---GIK----LNCKPLKEI---IADFVGIASSNLIICHNANHDRQVLKNTFKKVGIDW-Q 94

Query: 120 PSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHR-----SKHGALLDSHLLSDVYIK 173
           P +   +L +A+   P      L  L K+  + +  +       H A  D+     +Y K
Sbjct: 95  PFKFKCSLVLAQNTFPGLLSYSLEYLSKQLTLKVKQKYFHPLHAHAARYDAEFTYQLYRK 154

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVP 201
           +M    Q +     N+   F   +   P
Sbjct: 155 IM---EQQSLADLKNKPNPFASSRVDTP 179


>gi|254451927|ref|ZP_05065364.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
 gi|198266333|gb|EDY90603.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
          Length = 464

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 75/231 (32%), Gaps = 40/231 (17%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRT-FQVFLCPNGRKNSPEALKLHG 64
           M    FD+ETTG+    D+ ++  A+    D+ +  R   +  L P+    SP AL + G
Sbjct: 1   MNFAFFDLETTGVSPAFDQPLQFAAILTDSDFKEIERVDMRCRLAPHIIP-SPHALAVTG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF--------NEQNAEWIAHNA-KFDVGFI-NAELQRIN 114
           +    L           E ++F             A W   N+ +FD   +  A  Q + 
Sbjct: 60  LRPAEL-----IDPALPELFEFTQSLTELVSRWSPAIWTGFNSIRFDEEMLRQAFYQNLQ 114

Query: 115 KDPLD------------------PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
            +                       R  D L     +    R  L+ L    G      +
Sbjct: 115 AEVFATQFNGNTRFDIMTAVFGVWHRHRDLLEWPVDETGKVRFKLDRLAPLNG--FEGHN 172

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207
            H AL D    + ++I  ++         +    R     K  +  +S L+
Sbjct: 173 AHDALGDVE--AIIHIAQLIAQRDPALWTELLASRDKGYVKARLERLSPLE 221


>gi|157371451|ref|YP_001479440.1| exonuclease I [Serratia proteamaculans 568]
 gi|157323215|gb|ABV42312.1| Exodeoxyribonuclease I [Serratia proteamaculans 568]
          Length = 475

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 66/206 (32%), Gaps = 27/206 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPE 58
           M  K      + D ET G+    DR  +   V   +D++       ++  P +     PE
Sbjct: 1   MSSKAPATFYIHDYETFGISPSMDRPAQFAGVRTDMDFNIIEEPLVIYCTPADDYLPDPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A+ + GIT +  L    + +    +    F+      + +N  +FD         R   D
Sbjct: 61  AVMITGITPQLALAKGVNEAEFTRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L +  G+   H   
Sbjct: 121 PYAYSWQNGNSRWDLLDVMRACYALRPDGIVWPENEDGFPSFRLEHLTRANGVE--HEHA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQINF 183
           H A+ D +    + +  +V  +Q   
Sbjct: 179 HDAMSDVYAT--IAMAKLVKQAQPRL 202


>gi|28898075|ref|NP_797680.1| exonuclease I [Vibrio parahaemolyticus RIMD 2210633]
 gi|153836551|ref|ZP_01989218.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ3810]
 gi|260366376|ref|ZP_05778815.1| exodeoxyribonuclease I [Vibrio parahaemolyticus K5030]
 gi|260878424|ref|ZP_05890779.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AN-5034]
 gi|260897003|ref|ZP_05905499.1| exodeoxyribonuclease I [Vibrio parahaemolyticus Peru-466]
 gi|28806289|dbj|BAC59564.1| exodeoxyribonuclease I [Vibrio parahaemolyticus RIMD 2210633]
 gi|149750149|gb|EDM60894.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ3810]
 gi|308087707|gb|EFO37402.1| exodeoxyribonuclease I [Vibrio parahaemolyticus Peru-466]
 gi|308091094|gb|EFO40789.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AN-5034]
 gi|308113162|gb|EFO50702.1| exodeoxyribonuclease I [Vibrio parahaemolyticus K5030]
          Length = 473

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 69/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFL-CPNGRKNSPE 58
           M + N+     FD ET G +   DR  +   V    +++       ++   P     SPE
Sbjct: 1   MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +  +++  S     ++     ++     + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKAMQEGLSEPEFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L  + GI   H + 
Sbjct: 121 PYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVKNGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIEMAKKVKAAQPKL 202


>gi|332148514|dbj|BAK20106.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 252

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + +IDTL + R  +P    + LN+LCK++ I ++    H A+ D+   + + +KM+   +
Sbjct: 13  NPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKMLKDAA 70

Query: 180 Q--INFGFKTNED 190
           +  I +  + NE+
Sbjct: 71  EKGIQYHDELNEN 83


>gi|218679732|ref|ZP_03527629.1| Exonuclease RNase T and DNA polymerase III [Rhizobium etli CIAT
           894]
          Length = 143

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI  E ++D P F  +  EF +  +   A  IAHNA FD     A L    +        
Sbjct: 2   GIRPEHVEDAPEFPEVMDEFHE--DISGATMIAHNAAFDFSVWRASLDHY-RQSYPELTY 58

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRS 156
           + +L +A+R  P    + LN + +  G+   H +
Sbjct: 59  LCSLKMAQRIWPHFLSHRLNLIAEHLGLRFVHHN 92


>gi|229496898|ref|ZP_04390606.1| exonuclease [Porphyromonas endodontalis ATCC 35406]
 gi|229316216|gb|EEN82141.1| exonuclease [Porphyromonas endodontalis ATCC 35406]
          Length = 257

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 74/212 (34%), Gaps = 38/212 (17%)

Query: 2   IRKNKMRKIVFDIETTGL-------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           I K     ++FD +TTGL       +  +  +I++    L  + +  +    F+  +G  
Sbjct: 43  ISKRPHSIVLFDTDTTGLPNAPIQREEDSPELIQLAWCVLDSHLREVKRCNRFI--SGIN 100

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQR 112
              EA  +HGIT E LK +    +      +F ++ + +   +AHN  FD+  +   L+R
Sbjct: 101 VPSEATAIHGITTEELKQRG--EAARDVLLEFLSDWDGDTLLVAHNLAFDLHILGKALER 158

Query: 113 INKD------------PLDPSRIIDTLSIARRKH-------------PSSRNDLNSLCKR 147
                                 +++T ++ +  H             P     L  L   
Sbjct: 159 AGCTQGQIRKVSCHAAQYSYCTMLETCNLCKLPHLEHTNARAIPHQEPYKYPRLGELHSF 218

Query: 148 YGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                     H A+ D       + +++  G 
Sbjct: 219 LFGNDPTGETHDAVQDLDTCVRCFYQLIKSGH 250


>gi|291236484|ref|XP_002738169.1| PREDICTED: CG7896-like [Saccoglossus kowalevskii]
          Length = 1408

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 89/245 (36%), Gaps = 22/245 (8%)

Query: 10   IVFDIETTGL--DSKN--DRIIEIGAVELLDYS--KTNRTFQVFLCPNGRK-NSPEALKL 62
            +V D E T    +  +    IIE   V L++    K  + F+ F  P      S    +L
Sbjct: 1090 VVIDYEATCEKENPTDYVHEIIEFPVV-LINSKTLKMEKEFRTFCRPVLHPKLSDFCTEL 1148

Query: 63   HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFD-VGFINAELQRINKD 116
             GIT   +   P FS +  +F ++        + +  I  +  +D + F+N +       
Sbjct: 1149 TGITQAQVDGAPLFSDVLDQFENWLEENKLGSEYSFAIVTDGPWDIICFLNVQCVLSQIS 1208

Query: 117  -PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             P    R I+   +    + + R  L  +    G+T   R  H  + D   ++ + +K++
Sbjct: 1209 FPEYARRWINIRKLFSNYYHTRRLKLTLMLDHLGMTFEGRQ-HSGIADCRNIARIMVKLL 1267

Query: 176  VGGSQI------NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
              G QI          +T  D     E  +  ++  +         IT E+  EH   + 
Sbjct: 1268 EDGCQIKTNEVFTLPKQTYGDSDGMSEIDSQDDVEQVDDITEKIQSITVEKKAEHVSHVD 1327

Query: 230  TLGKN 234
                N
Sbjct: 1328 KSAGN 1332


>gi|327284033|ref|XP_003226743.1| PREDICTED: ERI1 exoribonuclease 2-like [Anolis carolinensis]
          Length = 260

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 29/197 (14%)

Query: 10  IVFDIETTGLDSKNDR----IIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           I+ D E+T  + +       IIE    +      +    F +++ P      S    +L 
Sbjct: 39  IIIDFESTCWNDRRKCYSQEIIEFPAVLLNTSDGEIESEFHMYVQPQEHPLLSEFCTELT 98

Query: 64  GITDEFLKDKPSFSSIFSEFWDFF----NEQNAEWI-AHN---------------AKFDV 103
           GIT   + D        S+F  +      E+N  +   H+               + +D+
Sbjct: 99  GITQSQVDDGVPLHICLSQFSKWIQKIQKEKNIIFTSGHSSCAASEGKLCAFVTWSDWDL 158

Query: 104 GFI--NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           G        ++  + P   +  ID  +  +  +      L    +  GI  + R  H  L
Sbjct: 159 GVCLHYECKRKQLRKPDILNSWIDLRATYKVFYSRKPQGLKGALQDVGIIFAGRE-HSGL 217

Query: 162 LDSHLLSDVYIKMMVGG 178
            DS   + +  +M+  G
Sbjct: 218 DDSRNTAHLAWRMIRDG 234


>gi|313905505|ref|ZP_07838869.1| Exonuclease RNase T and DNA polymerase III [Eubacterium
           cellulosolvens 6]
 gi|313469689|gb|EFR65027.1| Exonuclease RNase T and DNA polymerase III [Eubacterium
           cellulosolvens 6]
          Length = 320

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 66/181 (36%), Gaps = 16/181 (8%)

Query: 7   MRKIVFDIETT----GLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSP 57
           M  IVFD+E      G   +N R    IIEIGAV+L        T+Q  + P   K  + 
Sbjct: 1   MNYIVFDLEWNQSPHGKSRENPRLPFEIIEIGAVKLDHERNIVDTWQKVIRPTVYKTLNY 60

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              ++  I  + L     F     EF  +    ++ +       D+  +   ++  N   
Sbjct: 61  RTREIVHIDKKELDAGTYFPDAVREFLTWAG-HDSIFCTW-GTVDLPELQRNMKFYNILK 118

Query: 118 L--DPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L   P    D   +   ++    SR  L        +     + H AL+D+   + ++  
Sbjct: 119 LLKGPMHYYDVQKLFAVQYEDMNSRKSLEYGIDYLKLE-KQEAFHRALVDAKYTAQIFQT 177

Query: 174 M 174
           +
Sbjct: 178 I 178


>gi|219668974|ref|YP_002459409.1| sporulation inhibitor KapD [Desulfitobacterium hafniense DCB-2]
 gi|219539234|gb|ACL20973.1| Exonuclease RNase T and DNA polymerase III [Desulfitobacterium
           hafniense DCB-2]
          Length = 209

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 64/211 (30%), Gaps = 34/211 (16%)

Query: 7   MRKIVFDIETTGLDSKND---------RIIEIGAVELLDYSKT--NRTFQVFLCPNGRK- 54
           M  +V D E                   IIE+GA  L    K   ++TF  F+ P     
Sbjct: 1   MDFLVVDFE---FSVPQSYGKPRAWFPEIIEVGATVLDSNGKLALDKTFNAFVKPRFWPR 57

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            + E+  + GI  E +                 + + A  +A     D   +    ++  
Sbjct: 58  LAEESYGITGIRQEDVDQGILLEEAIQHLQKLAHPE-AYVVAWGDA-DRKILGNVCEKYG 115

Query: 115 KD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS------KHGALLDSHLL 167
              P      ID     +         L+ L       I   S       H AL D+   
Sbjct: 116 LKYPFVWENYIDLAEQYKHY-----RSLDHLIS-LKKAIEENSIEQIGILHSALDDAINA 169

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
           + V  +MM  G       KT E     EEK+
Sbjct: 170 AQVMARMMSEGWM----VKTGEQAHGSEEKR 196


>gi|330961285|gb|EGH61545.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 180

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 66/172 (38%), Gaps = 10/172 (5%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E T    G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPVRRPLLTHFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINKD-PLDP 120
            IT   +      ++++ +F  +     A  +   +   +D   +  E +    D  L  
Sbjct: 64  HITQSNIDSAAPLTAVWPQFERWLAHHRARVVGWASWGDYDRQQLEEEWRNHQLDSALSS 123

Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              ++     A+ +H      LNS  +  G+  S +  H AL+D+   + + 
Sbjct: 124 MPHVNLKQRFAQARHLQKPLGLNSALQLAGMQFSGQQ-HRALVDARNTARLL 174


>gi|167626316|ref|YP_001676816.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596317|gb|ABZ86315.1| Exodeoxyribonuclease I [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 482

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 61/196 (31%), Gaps = 28/196 (14%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEALKL 62
                + +D ETTG+++  D++++  A+           F  F+   P+    SP A   
Sbjct: 3   QNQTFLFYDSETTGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTP-SPIATIT 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFIN-------------- 107
           H I+        S      +     N      I +N   FD  F+               
Sbjct: 62  HHISIAQANTGVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121

Query: 108 --AELQRINKDPLDPSRII---DTLSIARRK----HPSSRNDLNSLCKRYGITISHRSKH 158
                 R +  P+     +   D L   +       P     L +L     +  S    H
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNDVLKWPKVLDEEGQPKISLKLENLNTENNL-YSGGRAH 180

Query: 159 GALLDSHLLSDVYIKM 174
            A+ D  +  ++  K+
Sbjct: 181 DAITDVIVTVELAKKL 196


>gi|158255560|dbj|BAF83751.1| unnamed protein product [Homo sapiens]
 gi|261858590|dbj|BAI45817.1| exoribonuclease 1 [synthetic construct]
          Length = 349

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 75/201 (37%), Gaps = 16/201 (7%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGF---INAELQRIN 114
            GIT + +    +F  +  +  D+        +    +  +  +D+     I  +L R+ 
Sbjct: 190 TGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLK 249

Query: 115 KDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             P       I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++
Sbjct: 250 YPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR-PHCGLDDSKNIARIAVR 308

Query: 174 MMVGGSQINFGFKTNEDRFFK 194
           M+  G ++    K +  +   
Sbjct: 309 MLQDGCELRINEKMHAGQLMS 329


>gi|119585972|gb|EAW65568.1| three prime histone mRNA exonuclease 1, isoform CRA_a [Homo
           sapiens]
          Length = 288

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 75/201 (37%), Gaps = 16/201 (7%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 69  ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 128

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGF---INAELQRIN 114
            GIT + +    +F  +  +  D+        +    +  +  +D+     I  +L R+ 
Sbjct: 129 TGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLK 188

Query: 115 KDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             P       I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++
Sbjct: 189 YPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR-PHCGLDDSKNIARIAVR 247

Query: 174 MMVGGSQINFGFKTNEDRFFK 194
           M+  G ++    K +  +   
Sbjct: 248 MLQDGCELRINEKMHAGQLMS 268


>gi|114623463|ref|XP_001136735.1| PREDICTED: hypothetical protein LOC463978 isoform 1 [Pan
           troglodytes]
          Length = 349

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 75/201 (37%), Gaps = 16/201 (7%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGF---INAELQRIN 114
            GIT + +    +F  +  +  D+        +    +  +  +D+     I  +L R+ 
Sbjct: 190 TGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLK 249

Query: 115 KDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             P       I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++
Sbjct: 250 YPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR-PHCGLDDSKNIARIAVR 308

Query: 174 MMVGGSQINFGFKTNEDRFFK 194
           M+  G ++    K +  +   
Sbjct: 309 MLQDGCELRINEKMHAGQLMS 329


>gi|31543184|ref|NP_699163.2| 3'-5' exoribonuclease 1 [Homo sapiens]
 gi|45476938|sp|Q8IV48|ERI1_HUMAN RecName: Full=3'-5' exoribonuclease 1; AltName: Full=3'-5'
           exonuclease ERI1; AltName: Full=Eri-1 homolog; AltName:
           Full=Histone mRNA 3'-end-specific exoribonuclease;
           AltName: Full=Histone mRNA 3'-exonuclease 1; AltName:
           Full=Protein 3'hExo; Short=HEXO
 gi|23271401|gb|AAH35279.1| Exoribonuclease 1 [Homo sapiens]
 gi|33520761|gb|AAQ21219.1| 3' exoribonuclease [Homo sapiens]
 gi|119585973|gb|EAW65569.1| three prime histone mRNA exonuclease 1, isoform CRA_b [Homo
           sapiens]
 gi|119585974|gb|EAW65570.1| three prime histone mRNA exonuclease 1, isoform CRA_b [Homo
           sapiens]
 gi|123979876|gb|ABM81767.1| three prime histone mRNA exonuclease 1 [synthetic construct]
 gi|123994641|gb|ABM84922.1| three prime histone mRNA exonuclease 1 [synthetic construct]
          Length = 349

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 75/201 (37%), Gaps = 16/201 (7%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGF---INAELQRIN 114
            GIT + +    +F  +  +  D+        +    +  +  +D+     I  +L R+ 
Sbjct: 190 TGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLK 249

Query: 115 KDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             P       I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++
Sbjct: 250 YPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR-PHCGLDDSKNIARIAVR 308

Query: 174 MMVGGSQINFGFKTNEDRFFK 194
           M+  G ++    K +  +   
Sbjct: 309 MLQDGCELRINEKMHAGQLMS 329


>gi|182417131|ref|ZP_02948504.1| exonuclease [Clostridium butyricum 5521]
 gi|237669064|ref|ZP_04529048.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182378973|gb|EDT76479.1| exonuclease [Clostridium butyricum 5521]
 gi|237657412|gb|EEP54968.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 205

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 37/200 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           M+ + FD ETT +   +  I ++  +           T + F   +     +  P A ++
Sbjct: 1   MKLLFFDTETTSIKPGS--ICQLSYITVDASTKPQVTTGKNFFFTVD----EMDPSAQEI 54

Query: 63  HGITDE---FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           HG + E    L +   F  +  +F + F E +   I HN  FD+ F+  EL  +  +  +
Sbjct: 55  HGFSLEKLYELSEGQYFEDLAFDFINDFREAD-FIIGHNVNFDIRFLKHELFTLG-ELFE 112

Query: 120 PSRIIDTLSIARRKHPSSR-------NDLNSLCKRYGITISH------------RSKHGA 160
           P  I  T++  +      +         L+ +     ++                + H A
Sbjct: 113 PKNIFCTMAYYKDICRIPKANGEIKNPKLSEVIDWLNVSEKQIAETSEKLFEGSGNYHDA 172

Query: 161 LLDSHLLSDVYIKMMVGGSQ 180
             D+      Y+ ++ G  +
Sbjct: 173 RFDTAAT---YLTVIEGLKK 189


>gi|262276726|ref|ZP_06054519.1| exodeoxyribonuclease I [alpha proteobacterium HIMB114]
 gi|262223829|gb|EEY74288.1| exodeoxyribonuclease I [alpha proteobacterium HIMB114]
          Length = 473

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 28/185 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHG 64
           M  + +D ETTG  S  D+II++GA+ + D       F+    L P G    P AL ++ 
Sbjct: 1   MNYVFYDFETTGRSSTWDQIIQVGAILVNDTFDILDRFEARCSLKP-GTVPEPGALLVNK 59

Query: 65  ITDEFLKDKPSFSS--IFSEFWD-FFNEQNAEWIAHNA-KFDVGFINAELQR----INKD 116
            T + LK K + S   +     + F     A +I +N+  FD  F+     +    +   
Sbjct: 60  TTPDMLK-KTNLSHFGMVQMMKETFEKWSPAMFIGYNSLSFDEEFLRKTFFKSLTDVYLT 118

Query: 117 PLDPSRIIDTL---SIARRKHPS-----------SRNDLNSLCKRYGITISHRSKHGALL 162
             + ++  D L     A   +P            +   L+ +    GI  SH + H A+ 
Sbjct: 119 NTNGNKRGDILGLVRSAHLYYPECLKTPISEKGNAVFKLDQIASMNGI--SHDNAHDAMG 176

Query: 163 DSHLL 167
           D    
Sbjct: 177 DVLAT 181


>gi|238757180|ref|ZP_04618367.1| Exodeoxyribonuclease I [Yersinia aldovae ATCC 35236]
 gi|238704558|gb|EEP97088.1| Exodeoxyribonuclease I [Yersinia aldovae ATCC 35236]
          Length = 476

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 61/191 (31%), Gaps = 26/191 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           M  KNK     + D ET G     DR  +   V   LD++       V+  P       P
Sbjct: 1   MSDKNKSPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQP 60

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  L +  + +    +    FN      + +N  +FD         R   
Sbjct: 61  EAVMITGITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  G+   H  
Sbjct: 121 DPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVE--HLH 178

Query: 157 KHGALLDSHLL 167
            H A+ D +  
Sbjct: 179 AHDAMSDVYAT 189


>gi|149914802|ref|ZP_01903332.1| Exodeoxyribonuclease I [Roseobacter sp. AzwK-3b]
 gi|149811595|gb|EDM71430.1| Exodeoxyribonuclease I [Roseobacter sp. AzwK-3b]
          Length = 459

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 85/234 (36%), Gaps = 34/234 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNR-TFQVFLCPNGRKNSPEALKLHG 64
           M  + +D+ETTG+  + D+ ++  A+    ++ + +R   +  L P+    SP+AL +  
Sbjct: 1   MDFVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDRVNIRCRLAPHILP-SPQALVVTR 59

Query: 65  ITDEFLKDK--PSFSSIFSEFWDFF-NEQNAEWIAHN-AKFDVGFINAELQR-----INK 115
           ++ + L D   PS      +  +F      A W+ +N  KFD   +     +     I  
Sbjct: 60  VSPDQLTDPNLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQNLSPNIYA 119

Query: 116 DPLDPSRIIDTL---SIARRKHPS-----------SRNDLNSLCKRYGITISHRSKHGAL 161
              + +   D L     A  + P                L+ L    GI     + H AL
Sbjct: 120 TQFNGNTRFDILPAVYAAYARQPDLFVWPTDDTGRRSFKLDRLAPANGIN--AHNAHDAL 177

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            D      ++I  ++         +  ++      +  + +     R   L TR
Sbjct: 178 GDVEAT--IHIARLIATRSPALWSELIDNAHKARVQAKLESF----RPYELVTR 225


>gi|226293898|gb|EEH49318.1| interferon-stimulated gene 20 kDa protein [Paracoccidioides
           brasiliensis Pb18]
          Length = 330

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 61/167 (36%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G+    DR   +G V +++Y+   + +  F+ P           + G++ 
Sbjct: 127 KYVAIDCEMVGVGPNPDRDSALGRVSIVNYNG-EQVYDSFVRPKETVTDWR-THVSGVSP 184

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +      +  +     +      I H  + D+  +   L   N+D  D S+     
Sbjct: 185 KHMAEARELEEVQKDVAKILD--GCILIGHAIRNDLKALL--LSHPNRDIRDTSKH---- 236

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I   + H ++ D+     ++ +
Sbjct: 237 PPYRKLAGGGSPRLKILALELLGLDI-QGAAHSSVEDARATMLLFRR 282


>gi|225684272|gb|EEH22556.1| RNA exonuclease [Paracoccidioides brasiliensis Pb03]
          Length = 327

 Score = 68.7 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 61/167 (36%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G+    DR   +G V +++Y+   + +  F+ P           + G++ 
Sbjct: 124 KYVAIDCEMVGVGPNPDRDSALGRVSIVNYNG-EQVYDSFVRPKETVTDWR-THVSGVSP 181

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +      +  +     +      I H  + D+  +   L   N+D  D S+     
Sbjct: 182 KHMAEARELEEVQKDVAKILD--GCILIGHAIRNDLKALL--LSHPNRDIRDTSKH---- 233

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I   + H ++ D+     ++ +
Sbjct: 234 PPYRKLAGGGSPRLKILALELLGLDI-QGAAHSSVEDARATMLLFRR 279


>gi|319787286|ref|YP_004146761.1| exodeoxyribonuclease I [Pseudoxanthomonas suwonensis 11-1]
 gi|317465798|gb|ADV27530.1| Exodeoxyribonuclease I [Pseudoxanthomonas suwonensis 11-1]
          Length = 480

 Score = 68.7 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 74/216 (34%), Gaps = 28/216 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV    +    +    +F+ P +    SP A  + GI 
Sbjct: 5   FLFYDLETFGADPRRSRIAQFAAVRTDRELQVVDEPISLFVRPADDLLPSPVATLITGIA 64

Query: 67  DEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI- 123
            +  L++  S +   +   +  +      + +N+ +FD  ++   L R   DP +     
Sbjct: 65  PQHALREGLSEAEATARIVEEMSRPGTCTLGYNSLRFDDEYVRHTLFRNFFDPYEREWRG 124

Query: 124 -------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                  +D + +A    P                L  L       +     H AL D +
Sbjct: 125 GNSRWDLLDVMRLAHALRPEGIEWPKREDGATSFKLEHLA--LANNVREGDAHEALSDVY 182

Query: 166 LLSDVYIKMMVGGSQI--NFGFKTNEDRFFKEEKKT 199
               +  +++        ++  +  E R       T
Sbjct: 183 ATIGL-ARLLRQAQPRLWDYALRMREKRHAASLLDT 217


>gi|283832563|ref|ZP_06352304.1| exodeoxyribonuclease I [Citrobacter youngae ATCC 29220]
 gi|291072232|gb|EFE10341.1| exodeoxyribonuclease I [Citrobacter youngae ATCC 29220]
          Length = 474

 Score = 68.7 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 58/178 (32%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G     DR  +  A+    D++        +  P       PEA+ + GIT +  
Sbjct: 14  DYETFGTHPALDRPAQFAAIRTDNDFNIIGEPEVFYCKPADDYLPQPEAVLITGITPQEA 73

Query: 71  KDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI----- 123
           ++K  + ++  +     F   +      +N +FD       L R   DP   S       
Sbjct: 74  REKGENEAAFAARIHALFTVPKTCILGYNNVRFDDEVTRNILYRNFYDPYAWSWQNDNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L K  GI   H + H A+ D +  
Sbjct: 134 WDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HANAHDAMADVYAT 189


>gi|92115139|ref|YP_575067.1| exonuclease I [Chromohalobacter salexigens DSM 3043]
 gi|91798229|gb|ABE60368.1| Exodeoxyribonuclease I subunit C [Chromohalobacter salexigens DSM
           3043]
          Length = 495

 Score = 68.7 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 68/224 (30%), Gaps = 31/224 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G D + DR  +  A+    D++        +  P       P+A  + GIT +  
Sbjct: 14  DYETFGADPRRDRPAQFAAIRTDSDFNPVGEPMTFYCKPADDFLPHPQACLITGITPQAA 73

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           + +        +      +      + +N  +FD         R   DP           
Sbjct: 74  RRRGLAEIEFAARIHAEMSVPGTCSLGYNTLRFDDEVSRHLFYRNFIDPYSREWQNGNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              ID +       P                L  L    GI   H   H AL D     +
Sbjct: 134 WDLIDVVRTYHALRPDGIEWPTREDGAPSFRLEDLTAANGIE--HAGAHDALADVRATIE 191

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
           +   +    +Q+       E      +K+TV  +  ++  KP+ 
Sbjct: 192 LARLLKARNAQL------FEYLLKLRDKRTVARMLDIQARKPML 229


>gi|328472968|gb|EGF43816.1| exonuclease I [Vibrio parahaemolyticus 10329]
          Length = 473

 Score = 68.7 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 69/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFL-CPNGRKNSPE 58
           M + N+     FD ET G +   DR  +   V    +++       ++   P     SPE
Sbjct: 1   MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +  +++  S     ++     ++     + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKAMQEGLSEPEFIAKIQAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L  + GI   H + 
Sbjct: 121 PYAWSWQNGNSRWDLLDVLRACHALRPEGIEWPENEDGFTSFKLEHLSVKNGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIEMAKKVKAAQPKL 202


>gi|322488730|emb|CBZ23977.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 405

 Score = 68.3 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 80/208 (38%), Gaps = 16/208 (7%)

Query: 9   KIVFDIETTGLDSKN---DRIIEI-GAVELLDYSKTNR--TFQVFLCP-NGRKNSPEALK 61
            IV D+E T   +       +IEI G +  +   + +R  +F  F+ P    + +P   +
Sbjct: 76  IIVVDVEATCEQNARSYPHEVIEIPGVLIDVRTGQVDRARSFHTFVKPWRNPRLTPFCTQ 135

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE---QNA-EWIAHNAKFDV-GFINAELQRINKD 116
           L GIT   +   PS +     F  ++ E   + A    A +  +D   FI+      +  
Sbjct: 136 LTGITQVVVDAAPSITEAIQLFEKWYRETIPRGAKTIFAADGPWDFKNFIHEHHILRDHV 195

Query: 117 PLD--PSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                    +D   + A R +      L+++ ++  +    R  H    D++ ++ + + 
Sbjct: 196 SFPSIFYEYLDIRTTFAHRLNHGVPIKLDAMLRKMNLRFDGR-PHNGFDDAYNIARLAVA 254

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVP 201
           MM  G  ++F      D  +      VP
Sbjct: 255 MMKAGCVLDFVIAIPLDDAYHYHLDGVP 282


>gi|238793487|ref|ZP_04637112.1| Exodeoxyribonuclease I [Yersinia intermedia ATCC 29909]
 gi|238727260|gb|EEQ18789.1| Exodeoxyribonuclease I [Yersinia intermedia ATCC 29909]
          Length = 476

 Score = 68.3 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 67/207 (32%), Gaps = 28/207 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           M  KNK     + D ET G     DR  +   V   LD++       ++  P       P
Sbjct: 1   MSDKNKQPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCAPADDYLPQP 60

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  L +  + +    +    FN      + +N  +FD         R   
Sbjct: 61  EAVMITGITPQHALANGVNEAEFSRQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  G+   H  
Sbjct: 121 DPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFKLEHLTKANGVE--HLH 178

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINF 183
            H A+ D H    + +  +V  +Q   
Sbjct: 179 AHDAMSDVHAT--IAMAKLVKQAQPRL 203


>gi|332148530|dbj|BAK20114.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 255

 Score = 68.3 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + +IDTL + R  +P    + LN+LCK++ I ++    H A+ D+   + + +KM+   +
Sbjct: 14  NPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKMLKDAA 71

Query: 180 Q--INFGFKTNED 190
           +  I +  + NE+
Sbjct: 72  EKGIQYHDELNEN 84


>gi|145299357|ref|YP_001142198.1| exodeoxyribonuclease I [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852129|gb|ABO90450.1| exodeoxyribonuclease I [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 475

 Score = 68.3 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 65/196 (33%), Gaps = 26/196 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G+    DR  +   +    D++       ++  P       PEA  + GIT +  
Sbjct: 17  DYETFGISPAKDRPSQFAGIRTDADFNIIGEPLVIYCKPPADYLPDPEACLITGITPQKA 76

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------DP 120
           +KD    +    +  + F   N   + +N+ +FD       L R   DP           
Sbjct: 77  MKDGLCEADFIRQIHEQFATPNTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYAWQNGNSR 136

Query: 121 SRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             I+D L       P                L  L    G+  SH + H AL D     +
Sbjct: 137 WDILDMLRACYALRPEGIEWAFDEEGKPSFRLEKLTVANGV--SHANAHDALSDVLATIE 194

Query: 170 VYIKMMVGGSQINFGF 185
           +  K++       F +
Sbjct: 195 M-AKLVKKAQPKLFEY 209


>gi|268571701|ref|XP_002648789.1| Hypothetical protein CBG11812 [Caenorhabditis briggsae]
 gi|187029998|emb|CAP30907.1| hypothetical protein CBG_11812 [Caenorhabditis briggsae AF16]
          Length = 302

 Score = 68.3 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 74/192 (38%), Gaps = 34/192 (17%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR------TFQVFLCPN-GRKNSPEALKL 62
           ++ D ETT  +   D  +EI  + ++  + T++       F   + P   +K S   ++L
Sbjct: 13  LILDFETTCEEGVFDHPVEIIQMSVVVLNITDKLIREDVVFNKLVKPVVNQKLSQYCIEL 72

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-------------------AKFDV 103
            GI  + +     FS ++ +F ++  +       HN                   A++  
Sbjct: 73  TGIQQDAVDKADIFSVVYQQFLEWLKK-------HNLDERKFAFACDGRQDMWRLAQYQF 125

Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             I      I +  ++ +RI   ++  +    + R++L  +   + I       H A+ D
Sbjct: 126 LLIKENFPAIFRQWININRIFQDIAKEKYLSIAGRSNLEKMSNFFEIKFEGH-AHNAMDD 184

Query: 164 SHLLSDVYIKMM 175
              L+ V  K++
Sbjct: 185 VKFLAQVAKKIL 196


>gi|158253677|gb|AAI54112.1| LOC100127672 protein [Xenopus (Silurana) tropicalis]
          Length = 272

 Score = 68.3 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M      R    +V D E T    +     IIE   ++L     +   TF  ++ P    
Sbjct: 70  MTSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHTYVQPVVHP 129

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI  + +  +P+ S +     ++  ++        + ++     +D+   
Sbjct: 130 QLTPFCTELTGIIQDMVDGQPTLSQVLERVDEWMAKEGLLDPSVKSIFVT-CGDWDLKLM 188

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  + + +     D  +    L  A         +N L  + K  G+++ H    H  + 
Sbjct: 189 LPGQCEYLGLQVADYFKQWINLKKAYSFAIGTWPKNGLLDMNK--GMSLQHIGRPHSGID 246

Query: 163 DSH 165
           D  
Sbjct: 247 DCR 249


>gi|330898429|gb|EGH29848.1| exonuclease I [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 307

 Score = 68.3 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 68/226 (30%), Gaps = 26/226 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ +NDR +++  +    D ++      +    +      P A  + GIT   L
Sbjct: 9   DYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPAACMITGITPATL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +K        +      +        +N  +FD         R   DP           
Sbjct: 69  AEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    GI   H   H AL D      +
Sbjct: 129 WDLIDVVRAAYALRPDGIVWPEQDGRVTLKLERLTAANGID--HGQAHDALSDVRAT--I 184

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            +  ++   Q          R  ++ ++ V  +  L      F+  
Sbjct: 185 ALARLIREKQPKLYDYLLALRSKQKVQEQVRLMQPLVHISGRFSAA 230


>gi|156372383|ref|XP_001629017.1| predicted protein [Nematostella vectensis]
 gi|156216008|gb|EDO36954.1| predicted protein [Nematostella vectensis]
          Length = 222

 Score = 68.3 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 71/215 (33%), Gaps = 34/215 (15%)

Query: 10  IVFDIETTGLDSKND----RIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D E+T    K       IIE    V      +    F+ F+ P    + S    KL 
Sbjct: 9   VVIDFESTCWKEKRRNSAPEIIEFPAVVVSTSTGEIVSEFRQFVSPTEHSRLSEFCTKLT 68

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE------------------------QNAEWIAHNA 99
           GIT + +       +    F  +  E                        + A  +   +
Sbjct: 69  GITQDQVDAGIPIGACLVLFSRWLKELQQLKGIRFMSDITRPNGRPIDQAKWAMSVTW-S 127

Query: 100 KFDVGFI--NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK 157
            +D+G    N  L++ +  P +    ID  +  ++ +    + L    K  GI    R  
Sbjct: 128 DWDIGICLKNECLRKRHLVPPELRSWIDLKATYKKFYSRKPDGLAGALKDLGIRFDGRE- 186

Query: 158 HGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
           H  L D+   + +  +M+  G  I+     +  R 
Sbjct: 187 HSGLDDARNTAALAWRMVRDGCVISVTSSLDAVRI 221


>gi|297578829|ref|ZP_06940757.1| exodeoxyribonuclease I [Vibrio cholerae RC385]
 gi|297536423|gb|EFH75256.1| exodeoxyribonuclease I [Vibrio cholerae RC385]
          Length = 474

 Score = 68.3 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFL-CPNGRKNSPE 58
           M ++++     FD ET G++   DR  +   V   +D++       ++   PN    +PE
Sbjct: 1   MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +       +     +      +  N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIELAKKVKAAQPKL 202


>gi|261253256|ref|ZP_05945829.1| hypothetical protein VIA_003281 [Vibrio orientalis CIP 102891]
 gi|260936647|gb|EEX92636.1| hypothetical protein VIA_003281 [Vibrio orientalis CIP 102891]
          Length = 176

 Score = 68.3 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 24/185 (12%)

Query: 4   KNKMRKIVFDIE----------TTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVFLCPN 51
            N  R + FD+E          TTG       IIE+G   ++L++     R  Q ++ P 
Sbjct: 1   MNHNRVVCFDLEMCCWNENGVGTTG------EIIEVGLAEIDLVNGEIVKRA-QYYVKPE 53

Query: 52  GRKNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
             + S    +L GIT   + K       +       F   N  + A     D   +  E 
Sbjct: 54  HDEVSLFCSQLTGITPRKVEKQGRPLEEVLKSMVKNFGGANKIYAA--WGRDDRILIKEC 111

Query: 111 QRINKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           Q    + P +    + TL   + +    R    +  +  GI    R  H   +D++ L+ 
Sbjct: 112 QDKGIEMPFNEFINLATLYRIQNRLKDKRIGHKAAQEAKGIEWEGRQ-HSGYVDAYNLAK 170

Query: 170 VYIKM 174
           + + M
Sbjct: 171 LALTM 175


>gi|229086122|ref|ZP_04218342.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock3-44]
 gi|228697181|gb|EEL49946.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock3-44]
          Length = 281

 Score = 68.3 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 75/199 (37%), Gaps = 18/199 (9%)

Query: 9   KIVFDIETTGLDSKND----RIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKL 62
            IVFD+E              +++IGA+++         R F   + P     +    KL
Sbjct: 7   YIVFDVERN-FRPYKSQDPSEVVDIGAIKVEASTMRMIGR-FASLVKPT-APLTRHTTKL 63

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDP 120
            GIT + LK+   F  +  +F  F  E N  ++    + D  F+  + Q  + +   ++ 
Sbjct: 64  TGITKQDLKEVEMFPKVIEQFLQF-TEDNCMFVTWGKE-DYKFLAQDCQLHHIECPSIEN 121

Query: 121 SRIIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
            R  D      + +         L    +++ +    +  H A  D+    ++++K +  
Sbjct: 122 ERKFDLQKFVFQAYEELFIDTPSLKFAVEQFALEWEGKQ-HRAYADAKNTLNIFLK-VCK 179

Query: 178 GSQINFGFKTNEDRFFKEE 196
              I   +K NE+    + 
Sbjct: 180 EKDIYKRYKRNEELVLTKN 198


>gi|295670013|ref|XP_002795554.1| RNA exonuclease [Paracoccidioides brasiliensis Pb01]
 gi|226284639|gb|EEH40205.1| RNA exonuclease [Paracoccidioides brasiliensis Pb01]
          Length = 349

 Score = 68.3 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 61/167 (36%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G+    DR   +G V +++Y+   + +  F+ P           + G++ 
Sbjct: 147 KYVAIDCEMVGVGPNPDRDSALGRVSIVNYNG-EQVYDSFVRPKETVTDWR-THVSGVSP 204

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +      +  +     +      I H  + D+  +   L   N+D  D S+     
Sbjct: 205 KHMAEARELEEVQKDVAKILD--GCILIGHAIRNDLKALL--LSHPNRDIRDTSKH---- 256

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I   + H ++ D+     ++ +
Sbjct: 257 PPYRKLAGGGSPRLKILASELLGLDI-QGAAHSSIEDARATMLLFRR 302


>gi|229525835|ref|ZP_04415240.1| exodeoxyribonuclease I [Vibrio cholerae bv. albensis VL426]
 gi|229339416|gb|EEO04433.1| exodeoxyribonuclease I [Vibrio cholerae bv. albensis VL426]
          Length = 478

 Score = 68.3 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFL-CPNGRKNSPE 58
           M ++++     FD ET G++   DR  +   V   +D++       ++   PN    +PE
Sbjct: 5   MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE 64

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +       +     +      +  N   + +N+ +FD         R   D
Sbjct: 65  AALITGITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFID 124

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L    GI   H + 
Sbjct: 125 PYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIE--HSNA 182

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 183 HDAMADVIATIELAKKVKAAQPKL 206


>gi|194015759|ref|ZP_03054375.1| exonuclease [Bacillus pumilus ATCC 7061]
 gi|194013163|gb|EDW22729.1| exonuclease [Bacillus pumilus ATCC 7061]
          Length = 205

 Score = 68.3 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 13/177 (7%)

Query: 4   KNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NS 56
             +   +V D E T  D K         IIE G V+    +  + TF  ++ P      +
Sbjct: 1   MEQKTVLVVDFEFTMPDGKYHPQNFFPEIIEAGVVKAASETIID-TFSSYVKPKKFPKLT 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
                  GIT + ++   SF +   +       ++ E I      D+  +      +N  
Sbjct: 60  KRCKSFLGITQQDVESGISFEAFIEKLVSLDGGEDCEIITW-GNMDMKVLKQNCM-LNHI 117

Query: 117 PLDPSRIIDTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                  +  L+   +     R    L    K YG   + +  H AL D+     + 
Sbjct: 118 AFPFKGKLRDLAFEYKTFFGDRTLTGLRKAAKEYGSEGAGK-HHKALDDAMTTYQLL 173


>gi|164420717|ref|NP_001106713.1| ERI1 exoribonuclease 3 isoform 1 [Bos taurus]
 gi|166989902|sp|A6QLH5|ERI3_BOVIN RecName: Full=ERI1 exoribonuclease 3; AltName: Full=Prion
           interactor 1; AltName: Full=Prion protein-interacting
           protein
 gi|151556386|gb|AAI47968.1| ERI3 protein [Bos taurus]
 gi|296488926|gb|DAA31039.1| ERI1 exoribonuclease 3 isoform 1 [Bos taurus]
          Length = 337

 Score = 68.3 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 135 MMSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 194

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 195 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLKVM 253

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  + Q +     D  +    L  A         +N L  + K  G+++ H    H  + 
Sbjct: 254 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSGID 311

Query: 163 DSH 165
           D  
Sbjct: 312 DCK 314


>gi|153801904|ref|ZP_01956490.1| exodeoxyribonuclease I [Vibrio cholerae MZO-3]
 gi|124122549|gb|EAY41292.1| exodeoxyribonuclease I [Vibrio cholerae MZO-3]
          Length = 474

 Score = 68.3 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFL-CPNGRKNSPE 58
           M ++++     FD ET G++   DR  +   V   +D++       ++   PN    +PE
Sbjct: 1   MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +       +     +      +  N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQRGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIELAKKVKAAQPKL 202


>gi|42521879|ref|NP_967259.1| excinuclease ABC subunit C [Bdellovibrio bacteriovorus HD100]
 gi|39574409|emb|CAE77913.1| excinuclease ABC subunit C [Bdellovibrio bacteriovorus HD100]
          Length = 511

 Score = 68.3 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 17/167 (10%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D++TTG       I+E+ A  L  +S+ +           R      L L GI  E L+ 
Sbjct: 2   DLQTTGAKPGAADILEV-AWSLSGHSEVHSVLSA--QAEDRPVPRRILALTGIASEELES 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
               S IF   +    ++ A  + H A+F+  F+ A  +   +       II T  IA+R
Sbjct: 59  ATPLSDIFDRLYQDIQDRPA--VIHFAQFERPFLTAAFETFKRSEFP---IICTHEIAKR 113

Query: 133 KHPSSR-NDLNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKMM 175
             P+     +  L   +G         + H           ++  ++
Sbjct: 114 LFPNLPARGIKGLAGYFGHSSGEFKRGASH-----VEATKIIWQHLV 155


>gi|153829736|ref|ZP_01982403.1| exodeoxyribonuclease I [Vibrio cholerae 623-39]
 gi|262191424|ref|ZP_06049612.1| exodeoxyribonuclease I [Vibrio cholerae CT 5369-93]
 gi|148874770|gb|EDL72905.1| exodeoxyribonuclease I [Vibrio cholerae 623-39]
 gi|262032713|gb|EEY51263.1| exodeoxyribonuclease I [Vibrio cholerae CT 5369-93]
          Length = 474

 Score = 68.3 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFL-CPNGRKNSPE 58
           M ++++     FD ET G++   DR  +   V   +D++       ++   PN    +PE
Sbjct: 1   MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +       +     +      +  N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIELAKKVKAAQPKL 202


>gi|115931779|ref|XP_001175832.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 268

 Score = 68.3 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 65/181 (35%), Gaps = 19/181 (10%)

Query: 9   KIVFDIETTGLDSKN---DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
            +V D E T LD++      +IE   +++   + +T  TF  ++ P          +L G
Sbjct: 79  FLVLDFEATCLDNERIEPQEVIEFPVLKVSGKTFETEATFHQYVEPQVHGVGEFCTRLTG 138

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT + +K +P+F+     F  +  ++       + +    F+      +           
Sbjct: 139 ITPDMVKGQPTFADTLKLFHVWMEKEGLV----DPEVKFIFVTCGDWDLKTMFPSQCAHF 194

Query: 125 DTLSIAR-RKHPSSRNDLNSLCKRY---------GITISH-RSKHGALLDSHLLSDVYIK 173
           +    +  R+  + +    ++   Y          + I H    H  + D   ++++   
Sbjct: 195 ELPYHSYFRRWLNIKKAFATVTSHYPKGMMQMLERLNIPHVGRHHSGIDDCRNIANILQA 254

Query: 174 M 174
           +
Sbjct: 255 L 255


>gi|119593281|gb|EAW72875.1| hCG2005011, isoform CRA_g [Homo sapiens]
          Length = 284

 Score = 68.3 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 35/226 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIE---IGAVELLDYSKTNRTFQVFLCP-----------NGRK 54
            +  D+E TGL S    I E            +  +      + P             R 
Sbjct: 58  FVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERP 117

Query: 55  NSPEALKLHGITDEFL---KDKPSFSSIFSEFWDFFNEQNAE--WIAHN-AKFDVGFINA 108
            + +A ++ G++ E L   +      ++      F + Q      +AHN   +D   + A
Sbjct: 118 FTAKASEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCA 177

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKH 158
           EL+R+       +  +DTL   R    +  +           L SL  RY       + H
Sbjct: 178 ELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRY-FRAEPSAAH 236

Query: 159 GALLDSHLLSDVYIK----MMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A  D H L  +++     ++    +   G+   E  +   +  ++
Sbjct: 237 SAEGDVHTLLLIFLHRAAELLAWADEQARGWAHIEPMYLPPDDPSL 282


>gi|47606206|sp|Q9BQ50|TREX2_HUMAN RecName: Full=Three prime repair exonuclease 2; AltName: Full=3'-5'
           exonuclease TREX2
 gi|12751319|gb|AAK07618.1|AF319571_2 3'-5' exonuclease TREX2-like protein [Homo sapiens]
 gi|12751321|gb|AAK07619.1|AF319572_2 3'-5' exonuclease TREX2-like protein [Homo sapiens]
 gi|119593276|gb|EAW72870.1| hCG2005011, isoform CRA_c [Homo sapiens]
          Length = 279

 Score = 68.3 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 35/226 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIE---IGAVELLDYSKTNRTFQVFLCP-----------NGRK 54
            +  D+E TGL S    I E            +  +      + P             R 
Sbjct: 53  FVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERP 112

Query: 55  NSPEALKLHGITDEFL---KDKPSFSSIFSEFWDFFNEQNAE--WIAHN-AKFDVGFINA 108
            + +A ++ G++ E L   +      ++      F + Q      +AHN   +D   + A
Sbjct: 113 FTAKASEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCA 172

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKH 158
           EL+R+       +  +DTL   R    +  +           L SL  RY       + H
Sbjct: 173 ELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRY-FRAEPSAAH 231

Query: 159 GALLDSHLLSDVYIK----MMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A  D H L  +++     ++    +   G+   E  +   +  ++
Sbjct: 232 SAEGDVHTLLLIFLHRAAELLAWADEQARGWAHIEPMYLPPDDPSL 277


>gi|184159087|ref|YP_001847426.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii ACICU]
 gi|332875915|ref|ZP_08443701.1| exonuclease [Acinetobacter baumannii 6014059]
 gi|183210681|gb|ACC58079.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU]
 gi|332735781|gb|EGJ66822.1| exonuclease [Acinetobacter baumannii 6014059]
          Length = 209

 Score = 68.3 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 38/209 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVE--LLDYSKT----NRTFQVFL-CPNGRKNSPEA 59
           M  ++ D ET+  +      IEI  V    LD  +     +  F  +  CP     S  A
Sbjct: 1   MSALILDTETSDFEKFP---IEIAHVPVSFLDSGELFVDKDACFDEYFSCPE--PISFGA 55

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +H I +  + DKPS+ +    F     +     I HN  +D+  I    + +N     
Sbjct: 56  MAVHHILETDIADKPSYET----FR--LPKDVQYIIGHNVDYDLRAIKLADKSVN----- 104

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH-------RSKHGALLDSHLLSDVYI 172
            ++ I TL+++R   P + ++L++L   Y ++          R+ H A  D  L + V +
Sbjct: 105 -AKSICTLALSRLVWPDAAHNLSALI--YMLSNGSVKARESIRNAHNAKQDVLLTA-VLL 160

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVP 201
           K +        G K  +  F   E+  +P
Sbjct: 161 KQICKA----LGIKDMQSLFLFSEQARIP 185


>gi|114562814|ref|YP_750327.1| exonuclease I [Shewanella frigidimarina NCIMB 400]
 gi|114334107|gb|ABI71489.1| Exodeoxyribonuclease I subunit C [Shewanella frigidimarina NCIMB
           400]
          Length = 473

 Score = 68.3 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 67/180 (37%), Gaps = 29/180 (16%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNR--TFQVFLCPNGRKNSPEALKLHGITDEF 69
           D ET G +   DR  +   +   L+ +      TF   L P+    SPEA+ + GIT + 
Sbjct: 15  DYETFGANPSKDRPSQFAGIRTDLELNIIGEPETFYCKLAPDYLP-SPEAILITGITPQL 73

Query: 70  --LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPS 121
             LK  P  +         F++ N   + +N+ +FD      GF    +    ++  + +
Sbjct: 74  ANLKGVP-EAEFMKRINTLFSQPNTCVVGYNSLRFDDEVSRYGFYRNFIDPYGREWQNGN 132

Query: 122 RIIDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              D + + R  +               S    L  L +  G  +SH   H A+ D +  
Sbjct: 133 SRWDIIDLVRACYAFRPDGINWPKKEDGSPSFKLELLTQANG--LSHEKAHDAMSDVYAT 190


>gi|237653249|ref|YP_002889563.1| exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
 gi|237624496|gb|ACR01186.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
          Length = 213

 Score = 68.3 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 58/195 (29%), Gaps = 35/195 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V + E TGLD + DR++ +GA+ +             L P                 
Sbjct: 44  RYVVLNTEATGLDLERDRLLAVGAIAVDGG---------LLHPQDAY------------- 81

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              + +P      +    F   +N+  +  NA F+   +     R+          ID  
Sbjct: 82  -HAQLEPLPGDALAGLLGF--ARNSPLVVFNATFNRTMLERAFSRM-LGFTPEFLWIDLY 137

Query: 128 SIARRKHP---SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            +     P        L      + I    R  H AL D+  ++ +++            
Sbjct: 138 FLLPSLFPERLERPGRLADWMAAFEIETFQR--HHALGDAWAIAQLFLA----AQSRALS 191

Query: 185 FKTNEDRFFKEEKKT 199
                 R   E  + 
Sbjct: 192 LAVTSPRALAEHAQA 206


>gi|325578381|ref|ZP_08148516.1| exodeoxyribonuclease I [Haemophilus parainfluenzae ATCC 33392]
 gi|325160117|gb|EGC72246.1| exodeoxyribonuclease I [Haemophilus parainfluenzae ATCC 33392]
          Length = 473

 Score = 68.3 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 25/188 (13%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEAL 60
             N     ++D E+ G++  +DR  +   +    +++       ++          PEA+
Sbjct: 1   MANDFSFFIYDYESFGINPASDRPAQFAGIRTDANFNIIGEPVMLYCKQTNDYLPAPEAV 60

Query: 61  KLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL 118
            + GIT +   +K        ++    F++ N   + +N  ++D         R   DP 
Sbjct: 61  MVTGITPQECNEKGIPEPEFAAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPY 120

Query: 119 DPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHG 159
           + S          +D +       P                L  L K  GI   H + H 
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIE--HENAHD 178

Query: 160 ALLDSHLL 167
           A+ D +  
Sbjct: 179 AMADVYAT 186


>gi|229521349|ref|ZP_04410768.1| exodeoxyribonuclease I [Vibrio cholerae TM 11079-80]
 gi|229341447|gb|EEO06450.1| exodeoxyribonuclease I [Vibrio cholerae TM 11079-80]
          Length = 478

 Score = 68.3 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPE 58
           M ++++     FD ET G++   DR  +   V   +D++       ++   PN    +PE
Sbjct: 5   MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE 64

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +       +     +      +  N   + +N+ +FD         R   D
Sbjct: 65  AALITGITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFID 124

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L    GI   H + 
Sbjct: 125 PYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIE--HSNA 182

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 183 HDAMADVIATIELAKKVKAAQPKL 206


>gi|222110882|ref|YP_002553146.1| exonuclease i [Acidovorax ebreus TPSY]
 gi|221730326|gb|ACM33146.1| Exodeoxyribonuclease I [Acidovorax ebreus TPSY]
          Length = 479

 Score = 68.3 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 74/222 (33%), Gaps = 30/222 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G +++ DR  +  AV    + ++      ++  P N     P++  + GIT +  
Sbjct: 8   DYETFGANTRRDRPAQFAAVRTDAELNEIGEPLMIYCRPANDYLPDPQSCLITGITPQLC 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           L+         +             + +N  +FD       F    +    ++  +    
Sbjct: 68  LEKGLPEREFAARIEAELALPGTIGVGYNTIRFDDEITRFMFWRNLMDPYAREWQNQCGR 127

Query: 124 IDTLSIARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
            D L + R  +                   L  L +  G  ++H + H AL D       
Sbjct: 128 WDLLDVVRLTYALRPEGIEWPEVDGKPSFRLEHLSQANG--LAHDAAHDALSDVRAT-IA 184

Query: 171 YIKMMVGGSQINFGFKTN---EDRFFKEEKKTVPNISLLKRD 209
             +++   +   F F  +   +DR   E +  +P  +   R 
Sbjct: 185 LARLIRSRNPRLFDFALSLHKKDRVAAELR--LPTTAQEARP 224


>gi|291231281|ref|XP_002735595.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 217

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 72/189 (38%), Gaps = 29/189 (15%)

Query: 9   KIVFDIETTGLDSK----------NDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRK-NS 56
            + FD+E T +D K             II+IGAV L  +  +    FQ +  P       
Sbjct: 7   YLCFDLEATCVDPKCPANQVTEGFQPEIIDIGAVILDSNTLEEKGEFQSYCRPVKHPTLQ 66

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE---------WIAHNAKFDVG-FI 106
           P  L+L  I+ E +     F  ++  F D+   +  +          +  +  FD G ++
Sbjct: 67  PFCLELTKISQETVDAADEFPDVWGRFIDWMKSKGLKPGAETPNFQLVT-DGPFDCGKYL 125

Query: 107 NAELQRINKDPLDPSRI----IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGAL 161
             +    +K            + T   + ++    R   L+ +    G+ +   S H AL
Sbjct: 126 FIQFNNTSKLSFPHWARNFVELKTEYKSYKRLVGRRWPKLSDMLAGLGL-LRSGSNHRAL 184

Query: 162 LDSHLLSDV 170
            D+H ++DV
Sbjct: 185 ADAHSVADV 193


>gi|227888148|ref|ZP_04005953.1| exonuclease [Escherichia coli 83972]
 gi|300977502|ref|ZP_07173939.1| exonuclease [Escherichia coli MS 45-1]
 gi|227834889|gb|EEJ45355.1| exonuclease [Escherichia coli 83972]
 gi|300409829|gb|EFJ93367.1| exonuclease [Escherichia coli MS 45-1]
          Length = 151

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 10/133 (7%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
           F+  L P       +A  +HGI+++ L   PS++ +  +      ++    I  NA+FD+
Sbjct: 3   FETRLKPT-VVIGTQAAAVHGISEQALCGAPSWTDVVRQLRHAIGDR--PVIIFNARFDI 59

Query: 104 GFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRN----DLNSLCKRYGITISHRSK 157
             +       +   D L+   +   + +A   + +S       L     + G+       
Sbjct: 60  RILKKTAAAHSDPADWLEELTVYCVMELAAGYYGASNRYGTISLACAASQTGLNWEG-QA 118

Query: 158 HGALLDSHLLSDV 170
           H A+ D+ + + V
Sbjct: 119 HSAIADARMTAGV 131


>gi|28869227|ref|NP_791846.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213967497|ref|ZP_03395645.1| exonuclease [Pseudomonas syringae pv. tomato T1]
 gi|301386461|ref|ZP_07234879.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13]
 gi|302059344|ref|ZP_07250885.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40]
 gi|302131217|ref|ZP_07257207.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28852468|gb|AAO55541.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213927798|gb|EEB61345.1| exonuclease [Pseudomonas syringae pv. tomato T1]
 gi|331016942|gb|EGH96998.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 180

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 66/172 (38%), Gaps = 10/172 (5%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E T    G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCKELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRIN-KDPLDP 120
            I+   +      ++++ +F  + +   A  +   +   +D   +  E +R      L  
Sbjct: 64  HISQSNIDSAAPLTTVWPQFERWLSHHRARVVGWASWGDYDRQQLEEEWRRHQLGSALSS 123

Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              ++     A+ +       LNS  +  G+  S +  H AL+D+   + + 
Sbjct: 124 MPHVNLKQRFAQARQLQKPVGLNSALQLAGMQFSGQQ-HRALVDARNTARLL 174


>gi|153949389|ref|YP_001401389.1| exonuclease I [Yersinia pseudotuberculosis IP 31758]
 gi|152960884|gb|ABS48345.1| exodeoxyribonuclease I [Yersinia pseudotuberculosis IP 31758]
          Length = 476

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 67/207 (32%), Gaps = 28/207 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           M  KNK     + D ET G     DR  +   V   LD++       ++  P       P
Sbjct: 1   MSDKNKQPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQP 60

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  L +  + +    +    F+      + +N  +FD         R   
Sbjct: 61  EAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  G+   H  
Sbjct: 121 DPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVE--HLQ 178

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINF 183
            H A+ D +    + +  +V  +Q   
Sbjct: 179 AHDAMSDVYAT--IAMAKLVKQAQPRL 203


>gi|296221910|ref|XP_002756956.1| PREDICTED: 3'-5' exoribonuclease 1-like [Callithrix jacchus]
          Length = 348

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 76/201 (37%), Gaps = 16/201 (7%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 129 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTRLSDFCISL 188

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVG-FINAELQ--RIN 114
            GIT + +    +F  +  +  D+        +    I  +  +D+  F+N + Q  RI 
Sbjct: 189 TGITQDQVDRADTFPHVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQISRIK 248

Query: 115 KDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                     I        K P S+  L  + ++ G+    R  H  L DS  ++ + ++
Sbjct: 249 YPSFAKKWINIRKSYGNFYKVPRSQTKLAIMLEKLGMDYDGR-PHCGLDDSKNIARIAVR 307

Query: 174 MMVGGSQINFGFKTNEDRFFK 194
           M+  G ++    K +  +   
Sbjct: 308 MLQDGCELRINEKMHAGQLMS 328


>gi|254281534|ref|ZP_04956502.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
           NOR51-B]
 gi|219677737|gb|EED34086.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
           NOR51-B]
          Length = 221

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 13/174 (7%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            ++ +V D E + L+     ++ +G V +        + Q  L  N R     A+ +H +
Sbjct: 38  DLKFLVCDAEMSALEVAEGELLSLGWVVIEAGEIVLASAQHHLIRNERSVGQSAV-IHQL 96

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D  L       +          E  A W+ H+A  DV F++   Q++   PL    ++D
Sbjct: 97  RDCELSAAGDTETALRALITAARE--AVWVFHHASLDVAFLDRACQQVFGAPLLV-PVVD 153

Query: 126 TLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           TL +  R     +         L +   RY +       H AL+D+   +++ +
Sbjct: 154 TLLLEHRLLERRQQTIGPGDLRLQACRDRYHLPP--HDAHNALVDAMATAELLL 205


>gi|74009144|ref|XP_549356.2| PREDICTED: similar to Three prime repair exonuclease 2 (3-5
           exonuclease TREX2) [Canis familiaris]
          Length = 236

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 69/196 (35%), Gaps = 33/196 (16%)

Query: 9   KIVFDIETTGL---DSKNDRIIEIGA----VELLDYSK--------TNRTFQVFLCPNGR 53
            +  D+E TGL   D +   I         +E  D  +              + + P  R
Sbjct: 10  FVFLDLEATGLPNIDPEVAEISLFAVHRSSLENPDRDESGAPVVPRVLDKLTLCMSPE-R 68

Query: 54  KNSPEALKLHGITDEFL---KDKPSFSSIFSEFWDFFNEQ--NAEWIAHN-AKFDVGFIN 107
             + +A ++ G++ + L   +      ++      F + Q      +AHN   +D   + 
Sbjct: 69  PFTAKASEITGLSSDSLARCRKAGFDHAVVRTLQAFLSRQEGPVCLVAHNGFDYDFPLLC 128

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSK 157
            EL+R+       +  +DTL   R    +  +           L SL +RY       + 
Sbjct: 129 TELRRLGAHLPPDTTCLDTLPALRSLDRAHSHGTRAQGCKGYSLGSLFRRY-FRAEPSAA 187

Query: 158 HGALLDSHLLSDVYIK 173
           H A  D H L  V++ 
Sbjct: 188 HSAEGDVHTLLMVFLH 203


>gi|70731551|ref|YP_261292.1| exonuclease [Pseudomonas fluorescens Pf-5]
 gi|68345850|gb|AAY93456.1| exonuclease [Pseudomonas fluorescens Pf-5]
          Length = 179

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 63/172 (36%), Gaps = 10/172 (5%)

Query: 9   KIVFDIETT---GLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E T   G    ++  IIEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLVIDLEATTDEGGWPVSEMEIIEIGATLVNRQGREQDHFQRFVRPLRRPMLTPFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG----FINAELQRINKDPLD 119
            IT   +      S ++  F  +  +         +  D       +    Q+++    +
Sbjct: 64  HITQANIDSAAPLSEVWGLFERWLGQHQPRLEGWASWGDYDRKQLQLEWHNQQLHSLLNE 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              +      A+ +       LN+  +  G+  + +  H AL D+   + + 
Sbjct: 124 VPHMNLKQRFAKARRLERPLGLNAALQLAGMQFTGQQ-HRALEDARNTARLL 174


>gi|171317547|ref|ZP_02906736.1| Exonuclease RNase T and DNA polymerase III [Burkholderia ambifaria
           MEX-5]
 gi|171097307|gb|EDT42153.1| Exonuclease RNase T and DNA polymerase III [Burkholderia ambifaria
           MEX-5]
          Length = 174

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 18/174 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K ++  I  D+ET G       ++ +GA  + D    +R F     P      PEAL
Sbjct: 1   MTTKQEV-FISVDVETAGPIPGEFSMLTLGACLVDD---PSRKFSCSFRPINDNFVPEAL 56

Query: 61  KLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRIN 114
           K+ G++ E L KD  S       F  +   Q        ++  NA FD  F+N    R  
Sbjct: 57  KVTGLSLERLAKDGLSPGDAMQNFAVWIGLQCTEWELPVFVGLNAPFDWSFVNYYFHRFT 116

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHL 166
              +    +  T S  +     +R+   ++ +R   T+   H + H AL  + L
Sbjct: 117 AVDIKALYMGATGSSWQ----DTRSS--AMARRLNPTLQGDHDALHDALYQAEL 164


>gi|294635527|ref|ZP_06714007.1| exodeoxyribonuclease I [Edwardsiella tarda ATCC 23685]
 gi|291091096|gb|EFE23657.1| exodeoxyribonuclease I [Edwardsiella tarda ATCC 23685]
          Length = 473

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 54/181 (29%), Gaps = 25/181 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G     DR  +   V    D++        +  P       PEA+ + GIT +  
Sbjct: 12  DYETFGQHPALDRPAQFAGVRTDADFNIIEEPQVFYCRPADDYLPQPEAVMITGITPQTA 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L      +         F+      + +N  +FD         R   DP   S       
Sbjct: 72  LAQGICEAEFAERIHQLFSVPGTCVVGYNNIRFDDEVSRNLFYRNFFDPYAYSWQNGNSR 131

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              +D L       P                L  L +  GI   H + H A+ D +   +
Sbjct: 132 WDLLDVLRTCYALRPQGIVWPENEQGLPSFKLEHLSQANGIE--HSNAHDAMADVYATIE 189

Query: 170 V 170
           +
Sbjct: 190 M 190


>gi|315052514|ref|XP_003175631.1| RNA exonuclease 4 [Arthroderma gypseum CBS 118893]
 gi|311340946|gb|EFR00149.1| RNA exonuclease 4 [Arthroderma gypseum CBS 118893]
          Length = 307

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 63/167 (37%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D E  G+    D+   +  V +++Y+  ++ +  ++ P        +  + GI  
Sbjct: 114 KYIAIDCEMVGVGPDPDKDSALARVSIVNYNG-DQVYDSYVRPKEMVTDWRS-AISGILP 171

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +  S  ++  +     + +    + H  + D+  +   L    +D  D SR     
Sbjct: 172 KHMVEARSLETVQQDVAKLLDGR--ILVGHAVRNDLEALL--LSHSKRDIRDTSRY---- 223

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I   S H ++ D+     ++ +
Sbjct: 224 PPYRKLAGGGSPKLKVLASELLGLEI-QGSAHSSVEDARATMMLFRR 269


>gi|257463061|ref|ZP_05627463.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium sp. D12]
          Length = 129

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 11/121 (9%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGI 65
           M+ + FD ETTGL  ++  II++ A+  +D  +   T  ++  P      S EAL +  +
Sbjct: 1   MKILYFDTETTGLTYRS-TIIQLAAIIEIDG-EVKETVNLYSAPFPDSDISEEALAVTKL 58

Query: 66  TDE--FLKDKPS-----FSSIFSEFWDFFNEQNA-EWIAHNAKFDVGFINAELQRINKDP 117
           T E  F  D P      F+ I  ++ D +N+ +    + HN KFD+  +     R N+  
Sbjct: 59  TREEIFRFDSPQLTCEMFTQILGKYVDKYNKNDKFTAVGHNVKFDLDMLRNWAYRCNEKF 118

Query: 118 L 118
           +
Sbjct: 119 I 119


>gi|224049609|ref|XP_002196066.1| PREDICTED: three prime histone mRNA exonuclease 1 [Taeniopygia
           guttata]
          Length = 387

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 76/223 (34%), Gaps = 22/223 (9%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDYS--KTNRTFQVFLCPNGRK-NSPEALK 61
             V D E T   G   +    IIE   V L++    +   TFQ ++ P      S   + 
Sbjct: 168 ICVVDFEATCEEGNPPEFVHEIIEFPVV-LVNTRTLEIEDTFQQYVKPEINPKLSDFCIS 226

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           L GIT + +     F  +     ++        + +  +  +  +D+        RI++ 
Sbjct: 227 LTGITQDIVDKADIFPQVLQNVIEWMRQRELGTKYSYSMLTDGSWDMSKFLNTQCRISRI 286

Query: 117 PLDPS--RIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                  + I+        +   RN   L  + +  G+    R  H  L DS  ++ + I
Sbjct: 287 KYPSFAKKWINIRKSYGNFYKVPRNQTKLTIMLENLGMNYDGR-PHSGLDDSKNIARIAI 345

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
           +M+    Q     + NE     +      ++ L     P   R
Sbjct: 346 RML----QDGCDLRVNERIHGGQLMTVSSSVPLEGAPAPQMPR 384


>gi|15641247|ref|NP_230879.1| exonuclease I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121591211|ref|ZP_01678513.1| exodeoxyribonuclease I [Vibrio cholerae 2740-80]
 gi|121728822|ref|ZP_01681834.1| exodeoxyribonuclease I [Vibrio cholerae V52]
 gi|147674379|ref|YP_001216801.1| exonuclease I [Vibrio cholerae O395]
 gi|153819174|ref|ZP_01971841.1| exodeoxyribonuclease I [Vibrio cholerae NCTC 8457]
 gi|153823017|ref|ZP_01975684.1| exodeoxyribonuclease I [Vibrio cholerae B33]
 gi|227081406|ref|YP_002809957.1| exodeoxyribonuclease I [Vibrio cholerae M66-2]
 gi|254848359|ref|ZP_05237709.1| exonuclease I [Vibrio cholerae MO10]
 gi|255745633|ref|ZP_05419581.1| exodeoxyribonuclease I [Vibrio cholera CIRS 101]
 gi|262159091|ref|ZP_06030203.1| exodeoxyribonuclease I [Vibrio cholerae INDRE 91/1]
 gi|262169449|ref|ZP_06037141.1| exodeoxyribonuclease I [Vibrio cholerae RC27]
 gi|298498672|ref|ZP_07008479.1| exonuclease I [Vibrio cholerae MAK 757]
 gi|9655715|gb|AAF94393.1| exodeoxyribonuclease I [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121546936|gb|EAX57085.1| exodeoxyribonuclease I [Vibrio cholerae 2740-80]
 gi|121628910|gb|EAX61366.1| exodeoxyribonuclease I [Vibrio cholerae V52]
 gi|126510260|gb|EAZ72854.1| exodeoxyribonuclease I [Vibrio cholerae NCTC 8457]
 gi|126519445|gb|EAZ76668.1| exodeoxyribonuclease I [Vibrio cholerae B33]
 gi|146316262|gb|ABQ20801.1| exodeoxyribonuclease I [Vibrio cholerae O395]
 gi|227009294|gb|ACP05506.1| exodeoxyribonuclease I [Vibrio cholerae M66-2]
 gi|227013151|gb|ACP09361.1| exodeoxyribonuclease I [Vibrio cholerae O395]
 gi|254844064|gb|EET22478.1| exonuclease I [Vibrio cholerae MO10]
 gi|255736708|gb|EET92105.1| exodeoxyribonuclease I [Vibrio cholera CIRS 101]
 gi|262022262|gb|EEY40971.1| exodeoxyribonuclease I [Vibrio cholerae RC27]
 gi|262029276|gb|EEY47928.1| exodeoxyribonuclease I [Vibrio cholerae INDRE 91/1]
 gi|297543005|gb|EFH79055.1| exonuclease I [Vibrio cholerae MAK 757]
          Length = 474

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPE 58
           M ++++     FD ET G++   DR  +   V   +D++       ++   PN    +PE
Sbjct: 1   MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +       +     +      +  N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIELAKKVKAAQPKL 202


>gi|315180353|gb|ADT87267.1| exonuclease I [Vibrio furnissii NCTC 11218]
          Length = 473

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 77/237 (32%), Gaps = 25/237 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPEA 59
           +++ +     FD ET G     DR  +   V   ++++       ++   P+    +PEA
Sbjct: 1   MQQQQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPTPEA 60

Query: 60  LKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDP 117
             + GI  +  +          ++     +  N   + +N+ +FD         R   DP
Sbjct: 61  ALITGIIPQKAMAQGLPEPEFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDP 120

Query: 118 LDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKH 158
              S          +D +       P                L  L K  GI   H + H
Sbjct: 121 YAWSWQNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTSFKLEHLSKANGIE--HENAH 178

Query: 159 GALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            A+ D     ++  K+     ++   F +   +    E   + N++ L     +  R
Sbjct: 179 DAMADVIATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGR 235


>gi|157145042|ref|YP_001452361.1| exonuclease I [Citrobacter koseri ATCC BAA-895]
 gi|157082247|gb|ABV11925.1| hypothetical protein CKO_00773 [Citrobacter koseri ATCC BAA-895]
          Length = 474

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 55/178 (30%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G     DR  +  ++    D++        +  P       P A+ + GIT +  
Sbjct: 14  DYETFGTHPALDRPAQFASIRTDSDFNIIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 73

Query: 71  KDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           +DK  + +         F       + +N  +FD       L R   DP   S       
Sbjct: 74  RDKGENEADFARRIHSLFTVPKTCVVGYNNVRFDDEVTRNILYRNFYDPYAWSWQHDNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L K  GI   H + H A+ D +  
Sbjct: 134 WDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HANAHDAMADVYAT 189


>gi|238761111|ref|ZP_04622088.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
 gi|238761364|ref|ZP_04622340.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
 gi|238700338|gb|EEP93079.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
 gi|238700591|gb|EEP93331.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
          Length = 476

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 66/207 (31%), Gaps = 28/207 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           M  KNK     + D ET G     DR  +   V   LD++       V+  P       P
Sbjct: 1   MSDKNKSPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQP 60

Query: 58  EALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  L    + +    +    FN      + +N  +FD         R   
Sbjct: 61  EAVMITGITPQQALAKGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  G+   H  
Sbjct: 121 DPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFKLEHLTKANGVE--HLH 178

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINF 183
            H A+ D H    + +  +V  +Q   
Sbjct: 179 AHDAMSDVHAT--IAMAKLVKQAQPRL 203


>gi|310768007|gb|ADP12957.1| exonuclease I [Erwinia sp. Ejp617]
          Length = 475

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 62/188 (32%), Gaps = 25/188 (13%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEAL 60
           R N+   +  D ET G     DR  +  A+   +D++        +  P       PEA+
Sbjct: 4   RANQSTFLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAV 63

Query: 61  KLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL 118
            + GIT +  + +  S +         F+  N   + +N  +FD         R   DP 
Sbjct: 64  MITGITPQIARARGLSEAEFTCRIHQLFSVPNTCVVGYNNVRFDDEVSRHLFYRNFYDPY 123

Query: 119 DPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHG 159
             S          +D +       P                L  L K  G+  +H + H 
Sbjct: 124 AWSWQHGNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGV--AHENAHD 181

Query: 160 ALLDSHLL 167
           A+ D +  
Sbjct: 182 AMSDVYAT 189


>gi|229505177|ref|ZP_04394687.1| exodeoxyribonuclease I [Vibrio cholerae BX 330286]
 gi|229511152|ref|ZP_04400631.1| exodeoxyribonuclease I [Vibrio cholerae B33]
 gi|229518270|ref|ZP_04407714.1| exodeoxyribonuclease I [Vibrio cholerae RC9]
 gi|229608197|ref|YP_002878845.1| exonuclease I [Vibrio cholerae MJ-1236]
 gi|229344985|gb|EEO09959.1| exodeoxyribonuclease I [Vibrio cholerae RC9]
 gi|229351117|gb|EEO16058.1| exodeoxyribonuclease I [Vibrio cholerae B33]
 gi|229357400|gb|EEO22317.1| exodeoxyribonuclease I [Vibrio cholerae BX 330286]
 gi|229370852|gb|ACQ61275.1| exodeoxyribonuclease I [Vibrio cholerae MJ-1236]
          Length = 478

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPE 58
           M ++++     FD ET G++   DR  +   V   +D++       ++   PN    +PE
Sbjct: 5   MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE 64

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +       +     +      +  N   + +N+ +FD         R   D
Sbjct: 65  AALITGITPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFID 124

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L    GI   H + 
Sbjct: 125 PYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIE--HSNA 182

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 183 HDAMADVIATIELAKKVKAAQPKL 206


>gi|160898944|ref|YP_001564526.1| exonuclease I [Delftia acidovorans SPH-1]
 gi|160364528|gb|ABX36141.1| Exodeoxyribonuclease I [Delftia acidovorans SPH-1]
          Length = 479

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 26/196 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEF- 69
           D ET G   + DR  +   +    + ++       +  P G     P++  + GIT +  
Sbjct: 9   DYETFGAQPRYDRPAQFAGIRTDAELNEIGEPVMWYCQPAGDYLPDPQSCLITGITPQQC 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           L+     +   +       +     + +N  +FD       F    +    ++  +    
Sbjct: 69  LEQGMPEAQFAARIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAREWQNGCGR 128

Query: 124 IDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            D L + R  +               S    L  L +  G+   H   H AL D      
Sbjct: 129 WDLLDVVRMVYALRPEGIVWPKKEDGSPSFKLEDLARANGLL--HEKAHDALSDVRATIG 186

Query: 170 VYIKMMVGGSQINFGF 185
           +  +++       F F
Sbjct: 187 L-ARLIRKVQPRLFDF 201


>gi|260768651|ref|ZP_05877585.1| exodeoxyribonuclease I [Vibrio furnissii CIP 102972]
 gi|260616681|gb|EEX41866.1| exodeoxyribonuclease I [Vibrio furnissii CIP 102972]
          Length = 473

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 77/237 (32%), Gaps = 25/237 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPEA 59
           +++ +     FD ET G     DR  +   V   ++++       ++   P+    +PEA
Sbjct: 1   MQQQQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPAPEA 60

Query: 60  LKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDP 117
             + GI  +  +          ++     +  N   + +N+ +FD         R   DP
Sbjct: 61  ALITGIIPQKAMAQGLPEPEFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDP 120

Query: 118 LDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKH 158
              S          +D +       P                L  L K  GI   H + H
Sbjct: 121 YAWSWQNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTSFKLEHLSKANGIE--HENAH 178

Query: 159 GALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215
            A+ D     ++  K+     ++   F +   +    E   + N++ L     +  R
Sbjct: 179 DAMADVIATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGR 235


>gi|212712795|ref|ZP_03320923.1| hypothetical protein PROVALCAL_03892 [Providencia alcalifaciens DSM
           30120]
 gi|212684487|gb|EEB44015.1| hypothetical protein PROVALCAL_03892 [Providencia alcalifaciens DSM
           30120]
          Length = 479

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 83/262 (31%), Gaps = 39/262 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G     DR  +   V   LD++        +  P       PEA+ + GIT +  
Sbjct: 18  DYETFGKHPALDRPAQFAGVRTDLDFNIIGEPEVFYCKPTDDYLPQPEAVMITGITPQIA 77

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           + +  + +         F+  N   + +N  +FD         R   DP   S       
Sbjct: 78  MANGVNEAEFAKRIHQAFSVPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYSWQQGNSR 137

Query: 124 ---IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLL-- 167
              +D L       P   N            L  L K  G+  SH + H A+ D      
Sbjct: 138 WDLLDALRACFALRPEGINWPENDDGLPSLRLEHLTKANGV--SHENAHDAMSDVLATIN 195

Query: 168 -SDVYI----KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
            + +      +M     Q+    K N+     +    V    +    +   + +T   L 
Sbjct: 196 MAKLLKQAQPRMFDYFYQLRNKNKVNQLIDIVDMTPLVHVSGMFGALRSYVSLVTP--LA 253

Query: 223 EHDKTIQTLGKNAIWDRYISSN 244
            H +      KNA+    +S +
Sbjct: 254 WHPE-----NKNAVIMCDLSGD 270


>gi|301156280|emb|CBW15751.1| exonuclease I [Haemophilus parainfluenzae T3T1]
          Length = 473

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 25/188 (13%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEAL 60
             N     ++D E+ G++  +DR  +   +    D++       ++          PEA+
Sbjct: 1   MANNFSFFIYDYESFGINPASDRPAQFAGIRTDADFNIIGEPVMLYCKQTNDYLPAPEAV 60

Query: 61  KLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL 118
            + GIT +   +K        ++    F++ N   + +N  ++D         R   DP 
Sbjct: 61  MVTGITPQECNEKGIPEPEFAAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPY 120

Query: 119 DPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHG 159
           + S          +D +       P                L  L K  GI   H + H 
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIE--HENAHD 178

Query: 160 ALLDSHLL 167
           A+ D +  
Sbjct: 179 AMADVYAT 186


>gi|183599505|ref|ZP_02960998.1| hypothetical protein PROSTU_02983 [Providencia stuartii ATCC 25827]
 gi|188021751|gb|EDU59791.1| hypothetical protein PROSTU_02983 [Providencia stuartii ATCC 25827]
          Length = 475

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 60/191 (31%), Gaps = 26/191 (13%)

Query: 1   MIRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           M    K       D ET G     DR  +   V   LD++  +     +  P       P
Sbjct: 1   MQETKKQPTFFIHDYETFGKHPALDRPAQFAGVRTDLDFNIIDEPEVFYCAPTDDYLPQP 60

Query: 58  EALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  L    + +         F++ N   + +N  +FD         R   
Sbjct: 61  EAVMITGITPQLALAQGVNEAEFAKRIHQQFSQPNTCIMGYNNIRFDDEVTRNIFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +DT+       P                L  L K  GI  +H +
Sbjct: 121 DPYAYSWQQGNSRWDLLDTVRACFALRPEGIIWPENDEGLPSMRLEHLTKANGI--AHEN 178

Query: 157 KHGALLDSHLL 167
            H A+ D    
Sbjct: 179 AHDAMSDVLAT 189


>gi|323359475|ref|YP_004225871.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
 gi|323275846|dbj|BAJ75991.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
          Length = 133

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           + P +S+  +    F        +AHNA FD+  +         D   P R + ++ ++R
Sbjct: 2   NAPDWSTQLARLTAFAGAD--VLVAHNAGFDMSVLRRACAATG-DECPPYRYLCSVQMSR 58

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +  +   L  + +  G   S  + H AL D+   +++
Sbjct: 59  KTYSLASYRLPLVAEEAGC--SPFAHHDALADAVACAEI 95


>gi|218132763|ref|ZP_03461567.1| hypothetical protein BACPEC_00624 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992489|gb|EEC58492.1| hypothetical protein BACPEC_00624 [Bacteroides pectinophilus ATCC
           43243]
          Length = 318

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 28/187 (14%)

Query: 7   MRKIVFDIETT----GLDSKND----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  IV D+E      G + +N      IIEIGAV+L         F   + P        
Sbjct: 1   MNYIVMDLEWNQCPKGKEFENKKLPFEIIEIGAVKLDSSFNVVGEFDRLIRPQL------ 54

Query: 59  ALKLHGI-------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
             KLH I       + E L    +F  +  EF ++  +++  +       D+  +   + 
Sbjct: 55  YTKLHHIVKELLDVSSEELLAGGAFPEVMEEFLEWC-DEDYMFCIW-GSGDLTELQRNMN 112

Query: 112 RINKDPLDPSRII--DTLSIARRKHPSS--RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
               +   P   I  D        +     R  L S+ +   ++      H A+ D+   
Sbjct: 113 FFGVENKFPMPFIFYDIQKFYSILYEDGKIRRSLQSVIEAMHLS-ETEEFHRAINDARYT 171

Query: 168 SDVYIKM 174
           + V   M
Sbjct: 172 AHVMQMM 178


>gi|31747840|gb|AAO38419.1| Lfe210p1 [Leptospirillum ferrooxidans]
          Length = 111

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 8/115 (6%)

Query: 15  ETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           ET+GL  D +  R++E          +  R     L         E  +++GIT E    
Sbjct: 2   ETSGLLRDPE-ARVVEWALSVWDGDKEIFRGGS--LVSGKGPIPEEVSRINGITTEMTVG 58

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            P+F  ++ E+ +   +  A  +AHN  FD+G IN +L R  + PL  +  ID+L
Sbjct: 59  CPTFRELYGEWKEHLKK--AIVVAHNLSFDLGMINRDLIRQGEIPLG-NPGIDSL 110


>gi|325926745|ref|ZP_08188053.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Xanthomonas perforans 91-118]
 gi|325542826|gb|EGD14281.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Xanthomonas perforans 91-118]
          Length = 183

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 17/176 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIE +G       ++ IGAV L+D  +T  +F + L P   ++ PEAL + G   E
Sbjct: 7   FVSVDIEASGPIPGEFSLLSIGAV-LVDRPET--SFYLELKPEDTRHDPEALAVTGFEIE 63

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSR 122
            L ++     +   +F  + +E +A      ++  NA FD  F+N    +   +      
Sbjct: 64  ELARNGVEPGAAMRKFGQWLSEFSAPSQRPVFVGLNAAFDWSFVNYYFHKYCGENPFGFT 123

Query: 123 IIDT----LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +D     + +   +   +++       R  +T      H AL D+   ++++ K+
Sbjct: 124 ALDIKAFFMGVVGSRWDQTKSSQMEKLLRPKLT----GTHNALEDARYQAELFRKL 175


>gi|47218345|emb|CAG04177.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 340

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 83/218 (38%), Gaps = 22/218 (10%)

Query: 9   KIVFDIETTG----LDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKL 62
             V D E T         +  IIE   V +  +  +   +F+ ++ P      S   +KL
Sbjct: 121 ICVVDFEATCEVDNPSDYHHEIIEFPMVLINTHTLEIVDSFREYVKPELNPQLSDFCVKL 180

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVG-FINAELQ--R 112
            GIT + +     F ++      +  E+        A     +  +D+  F+N + Q  R
Sbjct: 181 TGITQKMVDKAEPFPAVLERAVAWLQERELGTKYKYAILT--DGSWDMSKFLNIQCQISR 238

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           I + P    + I+     R  +  SR    L+++ ++ G+T + R  H  L DS  ++ +
Sbjct: 239 I-RYPQFAKKWINIRKAYRNFYKVSRTQTKLSTMLEKLGLTYNGR-PHCGLDDSRNIARI 296

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
            ++M+  G Q+    + +  +            +    
Sbjct: 297 AVRMLQDGCQLRVNERMHGGKMLSVPSSAAVEGAPAPH 334


>gi|6755877|ref|NP_036037.1| three prime repair exonuclease 2 [Mus musculus]
 gi|47606218|sp|Q9R1A9|TREX2_MOUSE RecName: Full=Three prime repair exonuclease 2; AltName: Full=3'-5'
           exonuclease TREX2
 gi|5731111|gb|AAD48777.1| 3'-5' exonuclease TREX2 [Mus musculus]
 gi|74354406|gb|AAI04385.1| Three prime repair exonuclease 2 [Mus musculus]
 gi|74355394|gb|AAI04386.1| Three prime repair exonuclease 2 [Mus musculus]
 gi|123212392|emb|CAM27430.1| three prime repair exonuclease 2 [Mus musculus]
 gi|148697953|gb|EDL29900.1| three prime repair exonuclease 2 [Mus musculus]
          Length = 236

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 68/195 (34%), Gaps = 31/195 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQ-VFLCP-----------NGRK 54
            +  D+E TGL + +  I EI   AV         R      + P             R 
Sbjct: 10  FVFLDLEATGLPNMDPEIAEISLFAVHRSSLENPERDDSGSLVLPRVLDKLTLCMCPERP 69

Query: 55  NSPEALKLHGITDE--FLKDKPSFS-SIFSEFWDFFNEQNAE--WIAHN-AKFDVGFINA 108
            + +A ++ G++ E      K  F+ ++      F + Q      +AHN   +D   +  
Sbjct: 70  FTAKASEITGLSSESLMHCGKAGFNGAVVRTLQGFLSRQEGPICLVAHNGFDYDFPLLCT 129

Query: 109 ELQRINKDPLDPSRIIDTLSIAR----------RKHPSSRNDLNSLCKRYGITISHRSKH 158
           ELQR+       +  +DTL   R          R        L SL  RY       + H
Sbjct: 130 ELQRLGAHLPQDTVCLDTLPALRGLDRAHSHGTRAQGRKSYSLASLFHRY-FQAEPSAAH 188

Query: 159 GALLDSHLLSDVYIK 173
            A  D H L  +++ 
Sbjct: 189 SAEGDVHTLLLIFLH 203


>gi|262165491|ref|ZP_06033228.1| exodeoxyribonuclease I [Vibrio mimicus VM223]
 gi|262025207|gb|EEY43875.1| exodeoxyribonuclease I [Vibrio mimicus VM223]
          Length = 474

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 67/204 (32%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPE 58
           M ++++     FD ET G++   DR  +   V   +D++       ++   PN    +PE
Sbjct: 1   MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +             +      +  N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKANSLGLPEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQHGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIELAKKIKAAQPKL 202


>gi|53729178|ref|ZP_00134021.2| COG2925: Exonuclease I [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126208153|ref|YP_001053378.1| exonuclease I [Actinobacillus pleuropneumoniae L20]
 gi|126096945|gb|ABN73773.1| exodeoxyribonuclease I [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 514

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 76/222 (34%), Gaps = 28/222 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEA 59
           + KN +    +D E+ G+    DR  +   +    D++        +         SPEA
Sbjct: 1   MNKN-LTFFFYDYESFGVSPALDRPAQFACIRTDSDFNIIGEPVMFYCKQTPDYLPSPEA 59

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQR 112
           + + GIT +    +        +     F++ N   + +N  ++D       F       
Sbjct: 60  VMVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDP 119

Query: 113 INKDPLDPSRIIDTLSIARRKH---PSS-----------RNDLNSLCKRYGITISHRSKH 158
                 + +   D L + R  +   P                L +L K  GI  +H + H
Sbjct: 120 YEYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGI--AHENAH 177

Query: 159 GALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A+ D +    + +  ++   Q        E+R  KE +K +
Sbjct: 178 DAMADVYAT--IAMAKLIKQKQPKLFQFFFENRGKKEIEKMI 217


>gi|199597071|ref|ZP_03210504.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
 gi|258507513|ref|YP_003170264.1| DNA polymerase III alpha subunit (Gram-positive type)
           [Lactobacillus rhamnosus GG]
 gi|199592204|gb|EDZ00278.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
 gi|257147440|emb|CAR86413.1| DNA polymerase III, alpha subunit (Gram-positive type)
           [Lactobacillus rhamnosus GG]
 gi|259648866|dbj|BAI41028.1| conserved hypothetical protein [Lactobacillus rhamnosus GG]
          Length = 469

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 26/183 (14%)

Query: 9   KIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEALKLHGI 65
            +V D E     +  +++   EI  + +  +   ++TF +F   P G    P ++K+ GI
Sbjct: 275 YVVIDTE---FVADRNQLDLTEISLLRVRQHR-IDQTFDIFTQLPAGHHVMPFSVKITGI 330

Query: 66  TDEFLKDK----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           TD+ L       P   +   +       ++   +      D+  + + L       +DP 
Sbjct: 331 TDDLLAKYGQSLPLVKTALQQLL-----RHELVVGFALSNDLRALQSGLA----IKVDPI 381

Query: 122 RIIDTLSIARRKHP-SSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +  D   +AR+      ++   L    +  GI +     H AL D+     +   ++  G
Sbjct: 382 QAFDAAVLARKTFGIGKKHTPSLQHYKEALGIDLP---SHTALSDAKTTMALLEHLIWQG 438

Query: 179 SQI 181
             +
Sbjct: 439 HPL 441


>gi|46114532|ref|XP_383284.1| hypothetical protein FG03108.1 [Gibberella zeae PH-1]
          Length = 327

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 73/220 (33%), Gaps = 18/220 (8%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + I  D E  G+ + ND II I  ++         +    + P+          +HGI
Sbjct: 80  KRKAIALDCEMAGVRNGNDEIISICVIDFFTGQVLINS---LVEPH-EPILEWRTDIHGI 135

Query: 66  TDEFLKDKPSFSSIF-------SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
               +    S   +         E +   N Q    +  +   D+  +    ++I     
Sbjct: 136 GPATIAIAASQGQVLRGWEAARQELFKHINMQ-TILVGQSLYHDLKVLRVSHEKI----F 190

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLC-KRYGITIS-HRSKHGALLDSHLLSDVYIKMMV 176
           D +     +          R  L SLC    G+ I  + S H AL D+    +V +  + 
Sbjct: 191 DTAIHTAEMVFGTDAAFGRRWSLQSLCMDLLGLRIRQNSSTHEALEDTMAAREVALWCLS 250

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
              Q+    K   +++  E  K        KR+     R+
Sbjct: 251 YPGQLEQWAKIAREKYVAEGLKRAKARQQKKRNVQRSPRV 290


>gi|88707066|ref|ZP_01104762.1| exodeoxyribonuclease I [Congregibacter litoralis KT71]
 gi|88698716|gb|EAQ95839.1| exodeoxyribonuclease I [Congregibacter litoralis KT71]
          Length = 482

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 61/178 (34%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G+D   DR  +   +   LD +       ++  P       P+A  + GIT +  
Sbjct: 11  DYETFGVDPAYDRPSQFAGLRTDLDLNLIGEPLVIYAQPPRDYVPHPDACLITGITPQTA 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------DP 120
           L +    +   S   D F +     + +N+ +FD     A L R  +DP           
Sbjct: 71  LAEGVVEAQFMSTILDEFMKPGTCAVGYNSLRFDDTVTRATLYRNLRDPYAREYGDGRSR 130

Query: 121 SRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             +ID +  A    P                L  LCK  G  +     H AL+D    
Sbjct: 131 WDLIDVVRTAYALRPEGLNWPTRDDGLPSFRLEDLCKANG--LEQGQAHDALVDVKAT 186


>gi|290970730|ref|XP_002668233.1| predicted protein [Naegleria gruberi]
 gi|284081517|gb|EFC35489.1| predicted protein [Naegleria gruberi]
          Length = 1135

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 22/172 (12%)

Query: 10   IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            +V D+ETTGL   +  I+++G + L+        F +++ P     S  A KLH   D+ 
Sbjct: 890  VVLDLETTGLMPNDHEIVQVGMISLISKC----AFSIYIKPKYHDWSSHAKKLH--VDKM 943

Query: 70   --LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
              + +      I     ++  + N   A  + H+   D  F+   L +    P+D   I+
Sbjct: 944  NEINNGKQLDQIIIPIHNYLTKNNSCTAVVLVHSTSLDRNFLMKALTKHGL-PIDRYMIV 1002

Query: 125  DTLSIARRKHPSSRNDLNSLCKRYGITISHRS------KHGALLDSHLLSDV 170
            +T+S      P  +  L +L  +    ++  +       H A  D+ +L D+
Sbjct: 1003 NTISE--EFFPKQK--LETLFNQVNKPMNTTTKDIIGVAHDAAFDTAMLFDI 1050


>gi|104780361|ref|YP_606859.1| exonuclease I [Pseudomonas entomophila L48]
 gi|95109348|emb|CAK14048.1| exonuclease I [Pseudomonas entomophila L48]
          Length = 476

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 56/177 (31%), Gaps = 24/177 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ + DR +++  V   LD ++      ++  P+      P A  + GIT + L
Sbjct: 9   DYETTGINPRCDRPLQMAGVRTDLDLNEIEAPINLYCRPSDDILPHPAACLVTGITPQQL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
             +        +               +N  +FD       L R   DP           
Sbjct: 69  ASQGLCEAEFMTRVHTELARPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              ID +  A    P               L  L K  GI   H   H AL D    
Sbjct: 129 WDLIDVVRTAYALRPEGIVWPQQDGRTSLRLELLSKANGID--HGHAHEALSDVRAT 183


>gi|120554172|ref|YP_958523.1| exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
 gi|120324021|gb|ABM18336.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
          Length = 279

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 18/181 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLD----SKNDR-------IIEIGAVELLDYSKTNRTFQVFLC 49
           M  +N    ++ D+E T  +       +R       IIE G        +   +    + 
Sbjct: 5   MPEQNDAPILIVDLEATCWESSRLPNGERQSIGNMEIIEFGCALATRTGELLDSRSFLVR 64

Query: 50  PNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFI 106
           P      S     L GI+   +   P +  +     ++  +  ++  W +    +D   I
Sbjct: 65  PVRNPDLSAFCRSLTGISQAMVNAAPPYPEVVRALDEWLGQPAESLIWCSW-GNYDRHHI 123

Query: 107 NAELQRINKDP-LDPSRIIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            AE +     P       ++   I RR      +  L S    + +    R  H  + D+
Sbjct: 124 QAESEAHGIAPRFLSCPHLNLKRIWRRSTGQKKKTGLASALAFHNLAFEGR-PHRGVDDA 182

Query: 165 H 165
            
Sbjct: 183 R 183


>gi|227487300|ref|ZP_03917616.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227542721|ref|ZP_03972770.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227092726|gb|EEI28038.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227181487|gb|EEI62459.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 312

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 69/191 (36%), Gaps = 30/191 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   I   I+TTGL     RI+ I AV          TF   + P      P    LHG+
Sbjct: 2   QDPFIALTIQTTGLHPSTARIVTIDAVTFDAEGTPVDTFFTMVNP---VTDPGPRHLHGV 58

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD------ 119
               ++    F     +     + +    I HNA    GFI +E +R  K          
Sbjct: 59  PRAEVEAARPFGHFLKKLCTLLDGR--TLITHNAPQTWGFIVSESKRTLKARRRKRGGRR 116

Query: 120 ---------PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSK-HGA-------- 160
                    P  ++DTL  ARR+    +   L SL  + G  +S ++    A        
Sbjct: 117 RRGVGHVPRPVAVVDTLGAARREGIFVTDTRLRSLAHQLGYNVSEKASISRAQQPAAELT 176

Query: 161 LLDSHLLSDVY 171
             D+ LL+ ++
Sbjct: 177 REDTLLLARLF 187


>gi|213621019|ref|ZP_03373802.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 275

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 1   MIRKN---KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           M  KN   +   +  D ET G     DR  +  A+    D++        +  P      
Sbjct: 1   MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLP 60

Query: 57  -PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI 113
            P A+ + GIT +  ++K  + ++        F       + +N  +FD         R 
Sbjct: 61  QPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRN 120

Query: 114 NKDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISH 154
             DP   S          +D +       P                L  L +  GI   H
Sbjct: 121 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIE--H 178

Query: 155 RSKHGALLDSHLL 167
            + H A+ D +  
Sbjct: 179 SNAHDAMADVYAT 191


>gi|283785833|ref|YP_003365698.1| exodeoxyribonuclease I [Citrobacter rodentium ICC168]
 gi|282949287|emb|CBG88898.1| exodeoxyribonuclease I [Citrobacter rodentium ICC168]
          Length = 474

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 57/178 (32%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G     DR  +  A+    D++        +  P       P A+ + GIT +  
Sbjct: 14  DYETFGTHPALDRPAQFAALRTDGDFNVVGEPEVFYCKPADDYLPQPGAVLVTGITPQEA 73

Query: 71  KDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           ++K  + ++  +     F       + +N  +FD       L R   DP   S       
Sbjct: 74  REKGENEAAFAARIHALFTVPKTCIVGYNNVRFDDEVTRNILYRNFYDPYAWSWQHDNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L K  GI   H + H A+ D +  
Sbjct: 134 WDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSNAHDAMADVYAT 189


>gi|213161996|ref|ZP_03347706.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
          Length = 104

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
           R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13  RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQP 72

Query: 58  EALKLHGITD-EFLKDKPSFSSIFSEFWD 85
           EAL  +GI     L+   S          
Sbjct: 73  EALAFNGIDPSNPLRGAVSEYEALHAILQ 101


>gi|120611894|ref|YP_971572.1| exonuclease I [Acidovorax citrulli AAC00-1]
 gi|120590358|gb|ABM33798.1| Exodeoxyribonuclease I subunit C [Acidovorax citrulli AAC00-1]
          Length = 478

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 69/223 (30%), Gaps = 31/223 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G D + DR  +   +    D ++      ++  P       PE+  L GIT +  
Sbjct: 8   DYETFGADPRRDRPAQFAGIRTDADLNEIGEPVMIYCRPAPDYLPDPESCLLTGITPQLC 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           L+         +             + +N  +FD       F    +    ++  +    
Sbjct: 68  LERGLPEHEFAARIEAELARPGTIGVGYNTIRFDDEITRFMFWRNLIDPYAREWQNECGR 127

Query: 124 IDTL--------------SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            D L                 R++  S    L  L +  G+   H + H AL D      
Sbjct: 128 WDLLDVVRLTYALRPDGIEWPRKEDGSPSLKLEHLSRANGLV--HEAAHDALSDVRAT-I 184

Query: 170 VYIKMMVGGSQINFGFKTN---EDRFFKEEKKTVPNISLLKRD 209
              +++       F F      +DR   E +  +P  +   R 
Sbjct: 185 ALARLIRERQPRLFEFALGLRRKDRVAAELR--LPATADTARP 225


>gi|327299386|ref|XP_003234386.1| exonuclease [Trichophyton rubrum CBS 118892]
 gi|326463280|gb|EGD88733.1| exonuclease [Trichophyton rubrum CBS 118892]
          Length = 306

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 64/167 (38%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G+ S  DR   +  V +++Y+  ++ +  ++ P        +  + GI  
Sbjct: 115 KYVAIDCEMVGVGSDPDRDSALARVSIVNYNG-DQVYDSYVRPKEMVTDWRS-AISGILP 172

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +  S  ++  +     + +    I H  + D+  +   L    +D  D SR     
Sbjct: 173 KHMAEARSLETVQQDVAKLLDGR--ILIGHAVRNDLEALL--LSHPKRDIRDTSRY---- 224

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I   S H ++ D+     ++ +
Sbjct: 225 PPYRKLAGGGSPKLKILASQLLGLEI-QGSAHSSVEDARATMMLFRR 270


>gi|111026133|ref|YP_708416.1| exonuclease [Rhodococcus jostii RHA1]
 gi|110824976|gb|ABH00258.1| possible exonuclease [Rhodococcus jostii RHA1]
          Length = 190

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D+E+T LD     IIEI  ++         T    + P      P+A  +HGI  
Sbjct: 20  RAVVLDVESTNLD---GSIIEICVLDAATGDPLLDT---LVDPGEVPIHPDAYAVHGIAP 73

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             L   P +S++               ++++++FD G +  +  R   DP  
Sbjct: 74  ADLIGAPGWSTVHQALIAV--TTGRVTLSYHSEFDKGRVLHDCARHGLDPAH 123


>gi|320086500|emb|CBY96271.1| exonuclease I, 3'-> 5' specific [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 333

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 1   MIRKN---KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           M  KN   +   +  D ET G     DR  +  A+    D++        +  P      
Sbjct: 1   MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLP 60

Query: 57  -PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI 113
            P A+ + GIT +  ++K  + ++        F       + +N  +FD         R 
Sbjct: 61  QPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRN 120

Query: 114 NKDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISH 154
             DP   S          +D +       P                L  L +  GI   H
Sbjct: 121 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIE--H 178

Query: 155 RSKHGALLDSHLL 167
            + H A+ D +  
Sbjct: 179 SNAHDAMADVYAT 191


>gi|326316823|ref|YP_004234495.1| exodeoxyribonuclease I [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373659|gb|ADX45928.1| Exodeoxyribonuclease I [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 478

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 69/223 (30%), Gaps = 31/223 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G D + DR  +   +    D ++      ++  P       PE+  L GIT +  
Sbjct: 8   DYETFGADPRRDRPAQFAGIRTDADLNEIGEPVMMYCRPAPDYLPDPESCLLTGITPQLC 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           L+         +             + +N  +FD       F    +    ++  +    
Sbjct: 68  LERGLPEHEFAARIEAELARPGTIGVGYNTIRFDDEITRFMFWRNLIDPYAREWQNECGR 127

Query: 124 IDTL--------------SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            D L                 R++  S    L  L +  G+   H + H AL D      
Sbjct: 128 WDLLDVVRLTYALRPDGIEWPRKEDGSPSLKLEHLSRANGLV--HEAAHDALSDVRAT-I 184

Query: 170 VYIKMMVGGSQINFGFKTN---EDRFFKEEKKTVPNISLLKRD 209
              +++       F F      +DR   E +  +P  +   R 
Sbjct: 185 ALARLIRQRQPKLFEFALGLRRKDRVAAELR--LPATADTARP 225


>gi|73977199|ref|XP_850849.1| PREDICTED: similar to prion protein interacting protein 1 isoform 2
           [Canis familiaris]
          Length = 335

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 133 MVPFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 192

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 193 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLKVM 251

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  + Q +     D  +    L  A         +N L  + K  G+++ H    H  + 
Sbjct: 252 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSGID 309

Query: 163 DSH 165
           D  
Sbjct: 310 DCK 312


>gi|73977201|ref|XP_862517.1| PREDICTED: similar to prion protein interacting protein 1 isoform 4
           [Canis familiaris]
 gi|301781887|ref|XP_002926358.1| PREDICTED: ERI1 exoribonuclease 3-like isoform 1 [Ailuropoda
           melanoleuca]
          Length = 259

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 57  MVPFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 116

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 117 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLKVM 175

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  + Q +     D  +    L  A         +N L  + K  G+++ H    H  + 
Sbjct: 176 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSGID 233

Query: 163 DSH 165
           D  
Sbjct: 234 DCK 236


>gi|258620230|ref|ZP_05715269.1| exodeoxyribonuclease I [Vibrio mimicus VM573]
 gi|258587588|gb|EEW12298.1| exodeoxyribonuclease I [Vibrio mimicus VM573]
          Length = 474

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPE 58
           M ++++     FD ET G++   DR  +   V   +D++       ++   PN    +PE
Sbjct: 1   MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +       S     +      +  N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKANSLGLSEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQHGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIELAKKIKAAQPKL 202


>gi|163814998|ref|ZP_02206385.1| hypothetical protein COPEUT_01151 [Coprococcus eutactus ATCC 27759]
 gi|158449681|gb|EDP26676.1| hypothetical protein COPEUT_01151 [Coprococcus eutactus ATCC 27759]
          Length = 326

 Score = 67.6 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 60/183 (32%), Gaps = 18/183 (9%)

Query: 7   MRKIVFDIE----TTGLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSP 57
           M  IV D+E      G   ++ R    IIEIGAV++         +   + P   +K   
Sbjct: 3   MNYIVMDLEWNQSYNGHMGEHPRMPFEIIEIGAVKVDKNLNIIDEYSSLIKPKIYKKLHS 62

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +   +    +  L     F  + SEF ++  + N  +       D+  +   +     D 
Sbjct: 63  KIRTILNYDENDLNLGRGFKEVCSEFLEWCGD-NYIFCTW-GPMDLTELQTNMDFYYMDK 120

Query: 118 LDPSRIIDTLSIARRKH------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           L        L             P + + L        I   +   H AL D+   + V 
Sbjct: 121 LPRPLKFLNLQSIYASITNQSGSPQTMSKLEKAVSEMNIP-ENEPFHTALNDARYTALVM 179

Query: 172 IKM 174
            +M
Sbjct: 180 KEM 182


>gi|330808406|ref|YP_004352868.1| exonuclease [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376514|gb|AEA67864.1| Conserved hypothetical protein; putative exonuclease [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 180

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 20/177 (11%)

Query: 9   KIVFDIETT---GLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E T   G     +  IIEIGA  +    +    FQ F+ P  R   +P   +L 
Sbjct: 4   WLVIDLEATTDEGGWPVTEMEIIEIGATLVNRDGREVDHFQRFVRPLRRPLLTPFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQR------IN 114
            IT   +      + ++  F  +     ++    ++    +D   +  E Q       + 
Sbjct: 64  HITQANIDSAAPLTEVWPAFERWLTPYQSKLESWVSW-GDYDRKQLLQEWQHQQLHSVLG 122

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           + P    +       A+ +       LN   +  G+    +  H AL D+   + + 
Sbjct: 123 QVPHMNLKQ----RFAKARRLERPLGLNGALQLAGLQFCGQQ-HRALEDARNTARLL 174


>gi|146327084|gb|AAI41731.1| LOC100049744 protein [Xenopus laevis]
          Length = 273

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M      R    +V D E T    +     IIE   ++L     +   TF  ++ P    
Sbjct: 71  MTSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHTYVQPVVHP 130

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI  + +  +P+ S +     ++  ++        + ++     +D+   
Sbjct: 131 QLTPFCTELTGIIQDMVDGQPTLSQVLERVDEWMAKEGLLDPSVKSIFVT-CGDWDLKLM 189

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  + + +     D  +    L  A         +N L  + K  G+++ H    H  + 
Sbjct: 190 LPGQCEYLGLQVADYFKQWINLKKAYSFAIGTWPKNGLLDMNK--GMSLQHIGRPHSGID 247

Query: 163 DSH 165
           D  
Sbjct: 248 DCR 250


>gi|297305033|ref|XP_001083188.2| PREDICTED: three prime repair exonuclease 2-like [Macaca mulatta]
          Length = 278

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 83/227 (36%), Gaps = 37/227 (16%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA-------VELLDYSK--------TNRTFQVFLCPNGR 53
            +  D+E TGL S +  I E+         +E L+  +              + +CP  R
Sbjct: 52  FVFLDLEATGLPSMDPEIAELSLFAVHRSSLENLERDESGAPVLPRVLDKLTLCMCPE-R 110

Query: 54  KNSPEALKLHGITDEFL---KDKPSFSSIFSEFWDFFNEQNAE--WIAHN-AKFDVGFIN 107
             + +A ++ G++ E L   +      ++      F + Q      +AHN   +D   + 
Sbjct: 111 PFTAKASEITGLSSEGLARCRKAGFDGAVVRMLQAFLSRQAGPICLVAHNGFDYDFPLLC 170

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSK 157
           AEL+R+       +  +DTL   R    +  +           L SL  RY       + 
Sbjct: 171 AELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRY-FQAEPSAA 229

Query: 158 HGALLDSHLLSDVYIK----MMVGGSQINFGFKTNEDRFFKEEKKTV 200
           H A  D H L  +++     ++    +   G+   E  +   +  ++
Sbjct: 230 HSAEGDVHTLLLIFLHRAAELLAWADEQARGWAHIEPMYLPPDDPSL 276


>gi|168236215|ref|ZP_02661273.1| exodeoxyribonuclease I (Exonuclease I) [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194733944|ref|YP_002115153.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194709446|gb|ACF88667.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290623|gb|EDY29978.1| exodeoxyribonuclease I (Exonuclease I) [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 476

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 1   MIRKN---KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           M  KN   +   +  D ET G     DR  +  A+    D++        +  P      
Sbjct: 1   MTVKNNSVQNTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLP 60

Query: 57  -PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI 113
            P A+ + GIT +  ++K  + ++        F       + +N  +FD         R 
Sbjct: 61  QPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRN 120

Query: 114 NKDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISH 154
             DP   S          +D +       P                L  L +  GI   H
Sbjct: 121 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIE--H 178

Query: 155 RSKHGALLDSHLL 167
            + H A+ D +  
Sbjct: 179 SNAHDAMADVYAT 191


>gi|302329867|gb|ADL20061.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275553|gb|ADO25452.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis I19]
          Length = 369

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +   I+T+G+     R+I + AV   +  +    F   + P     +P    LHG+
Sbjct: 40  RAPYVALSIQTSGIHPSTSRLITVDAVTFTEDGEETDHFHAVINPGD---NPGPFHLHGL 96

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           + E +     FS I        + +      HN  +  GF+
Sbjct: 97  SREEIAQGKKFSHILKPLGKLIDGRTLIL--HNTPYTWGFL 135


>gi|302205313|gb|ADL09655.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis C231]
          Length = 348

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +   I+T+G+     R+I + AV   +  +    F   + P     +P    LHG+
Sbjct: 19  RAPYVALSIQTSGIHPSTSRLITVDAVTFTEDGEETDHFHAVINPGD---NPGPFHLHGL 75

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           + E +     FS I        + +      HN  +  GF+
Sbjct: 76  SREEIAQGKKFSHILKPLGKLIDGRTLIL--HNTPYTWGFL 114


>gi|209695293|ref|YP_002263222.1| putative exonuclease [Aliivibrio salmonicida LFI1238]
 gi|208009245|emb|CAQ79508.1| putative exonuclease [Aliivibrio salmonicida LFI1238]
          Length = 184

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 71/183 (38%), Gaps = 13/183 (7%)

Query: 3   RKNKM---RKIVFDIETTGLD----SKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRK 54
           ++N M   R + FD+E    +     +   IIE+G  E+ L   +  R  Q ++ P+  +
Sbjct: 5   QRNTMNFNRIVCFDLEMCCWNENGKGRTGEIIEVGLAEIDLQTGEVVRRAQYYVKPDEDE 64

Query: 55  NSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
            S   ++L GIT   + K       +       F   N  + A     D   + +E +  
Sbjct: 65  ISLFCVELTGITPRKIEKQGRPLEGVLKSMIKNFGGTNKIYAA--WGHDELILKSECEAK 122

Query: 114 NKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             + P      + TL   + +  + R       +   I    R  H   +D++ L+ + +
Sbjct: 123 GIEFPFVEFINLATLYRIKSRKKNDRMGQRRAMEELHIEWEGRQ-HSGYVDAYNLAQLAL 181

Query: 173 KMM 175
           K++
Sbjct: 182 KIL 184


>gi|255318305|ref|ZP_05359540.1| exonuclease RNase T and DNA polymerase III [Acinetobacter
           radioresistens SK82]
 gi|262379050|ref|ZP_06072206.1| exonuclease [Acinetobacter radioresistens SH164]
 gi|255304617|gb|EET83799.1| exonuclease RNase T and DNA polymerase III [Acinetobacter
           radioresistens SK82]
 gi|262298507|gb|EEY86420.1| exonuclease [Acinetobacter radioresistens SH164]
          Length = 187

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 22/190 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +++++  I  DIE +G       ++ IGA   +D+ +  + FQ  + P      PEAL
Sbjct: 1   MAQRSEL-YISVDIEASGPIPGIYSLLSIGAC-NIDHPE--QNFQCEIKPLNSNAIPEAL 56

Query: 61  KLHGITDEFLKDKPSFS-SIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAELQR-IN 114
            + G++ E L+            F  + +    +Q   ++  NA FD  FIN      + 
Sbjct: 57  NVCGLSLESLQQTGLEPVQAMQMFSQWLSSLVIDQRLVFVGLNAGFDWSFINYYFWAFLG 116

Query: 115 KDPL-----DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            +P      D           +    SSR+       R  +       H AL D+   ++
Sbjct: 117 HNPFGISALDIKSYFMAAQHCKWSETSSRH-----MDRL-LHPKLSKNHNALDDALYQAE 170

Query: 170 VYIKMMVGGS 179
           ++ +++ G  
Sbjct: 171 LF-RLIRGQQ 179


>gi|289807092|ref|ZP_06537721.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 86

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 18/101 (17%)

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
           KP    +           +  ++AHNA FD   +          P  P   I T+ ++RR
Sbjct: 1   KPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLSRR 45

Query: 133 KHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDV 170
             P  +    +L K   +++        H AL D ++ +  
Sbjct: 46  LWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAAC 86


>gi|330000618|ref|ZP_08303759.1| exodeoxyribonuclease I [Klebsiella sp. MS 92-3]
 gi|328537942|gb|EGF64123.1| exodeoxyribonuclease I [Klebsiella sp. MS 92-3]
          Length = 474

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 54/178 (30%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITD-EF 69
           D ET G     DR  +  A+    + +        +  P       P+A+ + GIT  E 
Sbjct: 14  DYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGITPQEA 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L    + ++      D F       + +N  +FD         R   DP   S       
Sbjct: 74  LAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L    GI   H++ H A+ D +  
Sbjct: 134 WDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIE--HQNAHDAMADVYAT 189


>gi|170053941|ref|XP_001862902.1| exonuclease [Culex quinquefasciatus]
 gi|167874372|gb|EDS37755.1| exonuclease [Culex quinquefasciatus]
          Length = 369

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 66/200 (33%), Gaps = 28/200 (14%)

Query: 7   MRK-IVFDIETTG-----LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPE 58
            R  +V D E T      +  K   IIE    +  +   +    FQ F+ P    + S  
Sbjct: 155 FRYLVVMDFEATCWPEQDMKWKTHEIIEFPAVLLNMVTGQVEAQFQQFVMPVENPRLSEF 214

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDF----FNEQNAEW-----------IAHNAKFDV 103
             KL GI  + ++      +    F  +      E+               +A     D 
Sbjct: 215 CTKLTGIRQDQVEGGVPLKTCLPLFGKWLKQVLGERGLVLPKTDPGNQSGSVAFATWSDW 274

Query: 104 GF---INAELQRINKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
            F   ++ E  R   + P    + ID  +I  + +     +      + G+    R  H 
Sbjct: 275 DFGKCLSKECTRKRIEKPACFDQWIDVRAIYMKFYQHRPLNFGEALDKRGLGFEGR-PHS 333

Query: 160 ALLDSHLLSDVYIKMMVGGS 179
            L DS  L+ +  +M   G+
Sbjct: 334 GLDDSKNLARLITRMCKDGA 353


>gi|170051987|ref|XP_001862016.1| 3' histone mRNA exonuclease 1 [Culex quinquefasciatus]
 gi|167872972|gb|EDS36355.1| 3' histone mRNA exonuclease 1 [Culex quinquefasciatus]
          Length = 260

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 66/200 (33%), Gaps = 28/200 (14%)

Query: 7   MRK-IVFDIETTG-----LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPE 58
            R  +V D E T      +  K   IIE    +  +   +    FQ F+ P    + S  
Sbjct: 46  FRYLVVMDFEATCWPEQDMKWKTHEIIEFPAVLLNMVTGQVEAQFQQFVMPVENPRLSEF 105

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDF----FNEQNAEW-----------IAHNAKFDV 103
             KL GI  + ++      +    F  +      E+               +A     D 
Sbjct: 106 CTKLTGIRQDQVEGGVPLKTCLPLFGKWLKQVLGERGLVLPKTDPGNQSGSVAFATWSDW 165

Query: 104 GF---INAELQRINKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
            F   ++ E  R   + P    + ID  +I  + +     +      + G+    R  H 
Sbjct: 166 DFGKCLSKECTRKRIEKPACFDQWIDVRAIYMKFYQHRPLNFGEALDKRGLGFEGR-PHS 224

Query: 160 ALLDSHLLSDVYIKMMVGGS 179
            L DS  L+ +  +M   G+
Sbjct: 225 GLDDSKNLARLITRMCKDGA 244


>gi|330954430|gb|EGH54690.1| exonuclease [Pseudomonas syringae Cit 7]
          Length = 180

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 68/172 (39%), Gaps = 10/172 (5%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E T    G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINKD-PLDP 120
            I    +      ++++ +F  + +   A  +   +   +D   +  E ++ + D  L  
Sbjct: 64  HINQSSIDSAAPLTTVWPQFERWLSHHRARIVGWASWGDYDRQQLEEEWRQHHLDSALSS 123

Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              ++     A+ +H      LNS  +  G+  S +  H AL+D+   + + 
Sbjct: 124 MPHVNLKQRFAQARHLQKPMGLNSALQLAGMQFSGQQ-HRALVDARNTARLL 174


>gi|322613666|gb|EFY10606.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620237|gb|EFY17106.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322623283|gb|EFY20124.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630488|gb|EFY27257.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632835|gb|EFY29580.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638832|gb|EFY35526.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640283|gb|EFY36945.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647148|gb|EFY43647.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322648974|gb|EFY45417.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322653880|gb|EFY50204.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660987|gb|EFY57216.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322663072|gb|EFY59279.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668517|gb|EFY64672.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673348|gb|EFY69451.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322679134|gb|EFY75188.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683229|gb|EFY79244.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685901|gb|EFY81891.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195188|gb|EFZ80369.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198756|gb|EFZ83856.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202400|gb|EFZ87443.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323209215|gb|EFZ94151.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213844|gb|EFZ98621.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216128|gb|EGA00858.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323223218|gb|EGA07560.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323223733|gb|EGA08040.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231339|gb|EGA15453.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323232569|gb|EGA16666.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240988|gb|EGA25028.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245593|gb|EGA29588.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323247623|gb|EGA31572.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251066|gb|EGA34940.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323257464|gb|EGA41155.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263357|gb|EGA46891.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266324|gb|EGA49813.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323271468|gb|EGA54890.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 476

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 1   MIRKN---KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           M  KN   +   +  D ET G     DR  +  A+    D++        +  P      
Sbjct: 1   MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLP 60

Query: 57  -PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI 113
            P A+ + GIT +  ++K  + ++        F       + +N  +FD         R 
Sbjct: 61  QPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRN 120

Query: 114 NKDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISH 154
             DP   S          +D +       P                L  L +  GI   H
Sbjct: 121 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIE--H 178

Query: 155 RSKHGALLDSHLL 167
            + H A+ D +  
Sbjct: 179 SNAHDAMADVYAT 191


>gi|160893421|ref|ZP_02074206.1| hypothetical protein CLOL250_00970 [Clostridium sp. L2-50]
 gi|156864816|gb|EDO58247.1| hypothetical protein CLOL250_00970 [Clostridium sp. L2-50]
          Length = 319

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 16/181 (8%)

Query: 7   MRKIVFDIE----TTGLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSP 57
           M  IV D+E     +G   ++ R    IIEIGAV++    +    +   + P   +K   
Sbjct: 1   MNYIVMDLEWNQSYSGHIGEHPRMPFEIIEIGAVKVDKNYRIIDEYSSLIKPRIYKKLHS 60

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +   +    +  L     F  + +EF ++   ++  +       D+  +   +     D 
Sbjct: 61  KIRTILNYDETDLAKGRGFKEVCTEFLEWCG-KDYIFCTW-GPMDLTELQTNMAFYYMDK 118

Query: 118 LDPSRIIDTLS--IARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L        L    A    P+    + L      + I       H A+ D+   + V  +
Sbjct: 119 LPRPLKFLNLQQIYANMVDPTGSTVSKLEKAVADFNIP-EDEPFHSAVNDARYTALVLKE 177

Query: 174 M 174
           M
Sbjct: 178 M 178


>gi|238755403|ref|ZP_04616744.1| Exodeoxyribonuclease I [Yersinia ruckeri ATCC 29473]
 gi|238706340|gb|EEP98716.1| Exodeoxyribonuclease I [Yersinia ruckeri ATCC 29473]
          Length = 476

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 62/196 (31%), Gaps = 27/196 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE 68
           V D ET G     DR  +   V   LD++       V+  P       PEA+ + GIT +
Sbjct: 12  VHDYETFGQHPALDRPAQFAGVRTDLDFNIIEEPLVVYCSPADDYLPQPEAVMITGITPQ 71

Query: 69  -FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--- 123
             L    + +    +    F+      + +N  +FD         R   DP   S     
Sbjct: 72  TALAKGINEAEFSQQIHQAFSVAGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQNGN 131

Query: 124 -----IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                +D +       P                L  L K  G+   H   H A+ D H  
Sbjct: 132 SRWDLLDVMRACYALRPEGIIWPENDDGLPSFKLEHLTKANGVE--HLQAHDAMSDVHAT 189

Query: 168 SDVYIKMMVGGSQINF 183
             + +  +V  +Q   
Sbjct: 190 --IALAKLVKQAQPRL 203


>gi|113461015|ref|YP_719082.1| exonuclease I [Haemophilus somnus 129PT]
 gi|112823058|gb|ABI25147.1| Exodeoxyribonuclease I subunit C [Haemophilus somnus 129PT]
          Length = 486

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 27/219 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEAL 60
            +N     ++D E+ G++   DR  +   +    +++        +    +    SPE++
Sbjct: 11  MQNDFSFFIYDYESFGINPATDRPAQFAGIRTDQNFNIIGEPVMFYCKQTDDYLPSPESV 70

Query: 61  KLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL 118
            + GIT +   +K         +    F+  N   + +N  ++D         R   DP 
Sbjct: 71  LVTGITPQICNEKGIPEPEFAEKILAEFSHPNTCIMGYNNVRYDDEMTRYTFYRNFIDPY 130

Query: 119 DPSRI--------IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHG 159
           + S          ID +       P   N            L  L +  GI   H + H 
Sbjct: 131 EYSWKNGNSRWDLIDVVRACYALRPDGINWAYDDDGMPSFRLEKLTQVNGIE--HGNAHD 188

Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
           A+ D +    + +  ++   Q        E+R  +E +K
Sbjct: 189 AMADVYAT--IAMAKLIKQKQPKLFQFFFENRGKREVEK 225


>gi|88859960|ref|ZP_01134599.1| exodeoxyribonuclease I [Pseudoalteromonas tunicata D2]
 gi|88817954|gb|EAR27770.1| exodeoxyribonuclease I [Pseudoalteromonas tunicata D2]
          Length = 483

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 62/194 (31%), Gaps = 27/194 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEF- 69
           D ET G + + DR  +   V    D +       ++  P       P+A  + GIT +  
Sbjct: 17  DFETFGANPQKDRPSQFAGVRTDFDLNIIGEPLIIYCQPAPDYLPHPQACLITGITPQHA 76

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           LK     +   ++    F + N     +N+ +FD         R   DP           
Sbjct: 77  LKHGMIEAEFIAKIHQEFAKPNTCVAGYNSIRFDDEVSRYAFYRNFYDPYAREWQNGNSR 136

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              ID +       P                L  L K  GI   H + H AL D  + + 
Sbjct: 137 WDIIDLVRACYALRPEGIQWPLKEDGTPSFRLEDLTKANGIE--HAAAHDALSD--VTAT 192

Query: 170 VYIKMMVGGSQINF 183
           + +  ++   Q   
Sbjct: 193 IALAKLIKDKQPKL 206


>gi|161613258|ref|YP_001587223.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161362622|gb|ABX66390.1| hypothetical protein SPAB_00968 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 476

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 1   MIRKN---KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           M  KN   +   +  D ET G     DR  +  A+    D++        +  P      
Sbjct: 1   MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLP 60

Query: 57  -PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI 113
            P A+ + GIT +  ++K  + ++        F       + +N  +FD         R 
Sbjct: 61  QPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRN 120

Query: 114 NKDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISH 154
             DP   S          +D +       P                L  L +  GI   H
Sbjct: 121 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIE--H 178

Query: 155 RSKHGALLDSHLL 167
            + H A+ D +  
Sbjct: 179 SNAHDAMADVYAT 191


>gi|262040031|ref|ZP_06013293.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042608|gb|EEW43617.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 474

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 54/178 (30%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITD-EF 69
           D ET G     DR  +  A+    + +        +  P       P+A+ + GIT  E 
Sbjct: 14  DYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGITPQEA 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L    + ++      D F       + +N  +FD         R   DP   S       
Sbjct: 74  LAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L    GI   H++ H A+ D +  
Sbjct: 134 WDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIE--HQNAHDAMADVYAT 189


>gi|200388584|ref|ZP_03215196.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199605682|gb|EDZ04227.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 476

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 1   MIRKN---KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           M  KN   +   +  D ET G     DR  +  A+    D++        +  P      
Sbjct: 1   MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLP 60

Query: 57  -PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI 113
            P A+ + GIT +  ++K  + ++        F       + +N  +FD         R 
Sbjct: 61  QPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRN 120

Query: 114 NKDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISH 154
             DP   S          +D +       P                L  L +  GI   H
Sbjct: 121 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIE--H 178

Query: 155 RSKHGALLDSHLL 167
            + H A+ D +  
Sbjct: 179 SNAHDAMADVYAT 191


>gi|204929131|ref|ZP_03220274.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204321675|gb|EDZ06874.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 476

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 1   MIRKN---KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           M  KN   +   +  D ET G     DR  +  A+    D++        +  P      
Sbjct: 1   MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLP 60

Query: 57  -PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI 113
            P A+ + GIT +  ++K  + ++        F       + +N  +FD         R 
Sbjct: 61  QPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRN 120

Query: 114 NKDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISH 154
             DP   S          +D +       P                L  L +  GI   H
Sbjct: 121 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIE--H 178

Query: 155 RSKHGALLDSHLL 167
            + H A+ D +  
Sbjct: 179 SNAHDAMADVYAT 191


>gi|206578810|ref|YP_002237569.1| exodeoxyribonuclease I [Klebsiella pneumoniae 342]
 gi|206567868|gb|ACI09644.1| exodeoxyribonuclease I [Klebsiella pneumoniae 342]
          Length = 474

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 54/178 (30%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITD-EF 69
           D ET G     DR  +  A+    + +        +  P       P+A+ + GIT  E 
Sbjct: 14  DYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGITPQEA 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L    + ++      D F       + +N  +FD         R   DP   S       
Sbjct: 74  LAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L    GI   H++ H A+ D +  
Sbjct: 134 WDLLDVMRACYALRPEGITWPENDEGLPSFRLEHLTVANGIE--HQNAHDAMADVYAT 189


>gi|196248454|ref|ZP_03147155.1| conserved hypothetical protein [Geobacillus sp. G11MC16]
 gi|196212179|gb|EDY06937.1| conserved hypothetical protein [Geobacillus sp. G11MC16]
          Length = 129

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 10/136 (7%)

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI  + +   P  +     F  F +      + ++   D+ F+   L R  +      R
Sbjct: 2   TGIEAKDVVFAPPLAEALRTFVPFISAG--VLVGYHIGHDLSFLRHVLWRHYRQKWS-WR 58

Query: 123 IIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +D   I +  +HP     L+     YGI    R  H A  D   +  ++  ++    ++
Sbjct: 59  FVDMQPIVSLVRHPCP--TLDDALACYGIDCPRR--HTADGDVEAMVKLWAILLGELREL 114

Query: 182 NFGFKTNEDRFFKEEK 197
             G +T  D +    +
Sbjct: 115 --GIETLHDLYAALSR 128


>gi|9107140|gb|AAF84824.1|AE004021_1 exodeoxyribonuclease I [Xylella fastidiosa 9a5c]
          Length = 494

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 76/210 (36%), Gaps = 30/210 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV    + +         + P +    SP+A  + GIT
Sbjct: 21  FLFYDLETFGQDPRRTRIAQFAAVRTDTELNVIEEPISFLVKPADDLLPSPDATLITGIT 80

Query: 67  DEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR-- 122
            +   ++  + ++ F+         +   + +N  +FD  FI   L R   DP +     
Sbjct: 81  PQHAQREGINEAAAFTHIAMQMTRPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYEREWRN 140

Query: 123 ---IIDTLSIARRKH---PSSRN-----------DLNSLCKRYGITISHR--SKHGALLD 163
                D L + R  H   P   +            L  L     +    R  + H AL D
Sbjct: 141 GNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLA----LANHAREGAAHEALSD 196

Query: 164 SHLLSDVYIKMMVGGSQI-NFGFKTNEDRF 192
            +    +  K      ++ N+  +  + RF
Sbjct: 197 VYATISMARKFRTAQPRLWNYALQLRDKRF 226


>gi|291326156|ref|ZP_06123420.2| exodeoxyribonuclease I [Providencia rettgeri DSM 1131]
 gi|291315456|gb|EFE55909.1| exodeoxyribonuclease I [Providencia rettgeri DSM 1131]
          Length = 479

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 69/209 (33%), Gaps = 28/209 (13%)

Query: 2   IRKNKMRKIVF--DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           ++ NK +   F  D ET G     DR  +   V   LD++        +  P       P
Sbjct: 5   LQDNKKQPTFFIHDYETFGKRPALDRPAQFAGVRTDLDFNIIEEPEVFYCAPADDYLPQP 64

Query: 58  EALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  L    + +         F+  N   + +N  +FD         R   
Sbjct: 65  EAVMITGITPQVALSQGVNEAEFAKRIHAAFSVPNTCIMGYNNIRFDDEVTRNIFYRNFY 124

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +DTL       P                L  L K  G+  +H +
Sbjct: 125 DPYAYSWQQGNSRWDLLDTLRACFALRPEGLQWPENEDGLPSMRLEHLTKANGV--AHEN 182

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            H A+ D     ++  K++       F +
Sbjct: 183 AHDAMSDVLATINM-AKLLKAAQPRMFDY 210


>gi|213850284|ref|ZP_03381182.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 225

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 1   MIRKN---KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           M  KN   +   +  D ET G     DR  +  A+    D++        +  P      
Sbjct: 1   MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLP 60

Query: 57  -PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI 113
            P A+ + GIT +  ++K  + ++        F       + +N  +FD         R 
Sbjct: 61  QPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRN 120

Query: 114 NKDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISH 154
             DP   S          +D +       P                L  L +  GI   H
Sbjct: 121 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIE--H 178

Query: 155 RSKHGALLDSHLL 167
            + H A+ D +  
Sbjct: 179 SNAHDAMADVYAT 191


>gi|62180647|ref|YP_217064.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|167551009|ref|ZP_02344764.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|168259635|ref|ZP_02681608.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168818244|ref|ZP_02830244.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194443671|ref|YP_002041334.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|197247769|ref|YP_002147025.1| exonuclease I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|198243454|ref|YP_002216153.1| exonuclease I [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|224583437|ref|YP_002637235.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|238913451|ref|ZP_04657288.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|62128280|gb|AAX65983.1| exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194402334|gb|ACF62556.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197211472|gb|ACH48869.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197937970|gb|ACH75303.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205323967|gb|EDZ11806.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205344805|gb|EDZ31569.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205351000|gb|EDZ37631.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|224467964|gb|ACN45794.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|322715118|gb|EFZ06689.1| Exonuclease, RNase T and DNA polymerase III [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|326623899|gb|EGE30244.1| LPS-assembly lipoprotein RlpB [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 476

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 1   MIRKN---KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           M  KN   +   +  D ET G     DR  +  A+    D++        +  P      
Sbjct: 1   MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLP 60

Query: 57  -PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI 113
            P A+ + GIT +  ++K  + ++        F       + +N  +FD         R 
Sbjct: 61  QPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRN 120

Query: 114 NKDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISH 154
             DP   S          +D +       P                L  L +  GI   H
Sbjct: 121 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIE--H 178

Query: 155 RSKHGALLDSHLL 167
            + H A+ D +  
Sbjct: 179 SNAHDAMADVYAT 191


>gi|157821045|ref|NP_001101050.1| three prime repair exonuclease 2 [Rattus norvegicus]
 gi|149029940|gb|EDL85052.1| rCG43845 [Rattus norvegicus]
          Length = 236

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 70/195 (35%), Gaps = 31/195 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQ-VFLCP-----------NGRK 54
            +  D+E TGL + +  I EI   AV         R      + P             R 
Sbjct: 10  FVFLDLEATGLPNMDPEIAEISLFAVHRSSLENPERDDSGSLVLPRVLDKLTLCMCPERP 69

Query: 55  NSPEALKLHGITDEFLKD--KPSFSS-IFSEFWDFFNEQNAE--WIAHN-AKFDVGFINA 108
            + +A ++ G++ E L +  K +F+  +      F + Q      +AHN   +D   +  
Sbjct: 70  FTAKASEITGLSSEGLMNCRKAAFNDAVVRTLQGFLSRQEGPICLVAHNGFDYDFPLLCT 129

Query: 109 ELQRINKDPLDPSRIIDTLSIAR----------RKHPSSRNDLNSLCKRYGITISHRSKH 158
           ELQR+       +  +DTL   R          R        L SL  RY       + H
Sbjct: 130 ELQRLGAHLPRDTVCLDTLPALRGLDRVHSHGTRAQGRKSYSLASLFHRY-FQAEPSAAH 188

Query: 159 GALLDSHLLSDVYIK 173
            A  D + L  +++ 
Sbjct: 189 SAEGDVNTLLLIFLH 203


>gi|37526737|ref|NP_930081.1| exonuclease I [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36786169|emb|CAE15221.1| exodeoxyribonuclease I (exonuclease I) (DNA
           deoxyribophosphodiesterase) [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 476

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 59/178 (33%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G     DR  +   V   +D++       ++  P       PEA+ + GIT +  
Sbjct: 14  DYETFGQHPALDRPAQFAGVRTDMDFNIIEEPLVIYCSPADDYLPQPEAVMITGITPQIA 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L+   + +    +  + F+  N+  + +N  +FD         R   DP   S       
Sbjct: 74  LEKGVNEAEFARQIHNAFSVPNSCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQKGNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D L       P                L  L K  G+   H   H A+ D +  
Sbjct: 134 WDLLDVLRACYALRPEGIIWPENEEGLPSFKLEHLTKANGVE--HSHAHDAMSDVYAT 189


>gi|16760997|ref|NP_456614.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29141307|ref|NP_804649.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56413034|ref|YP_150109.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361958|ref|YP_002141595.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|213053400|ref|ZP_03346278.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213421859|ref|ZP_03354925.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
 gi|213425574|ref|ZP_03358324.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213648908|ref|ZP_03378961.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|289829232|ref|ZP_06546844.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|25289114|pir||AF0763 exodeoxyribonuclease I (EC 3.1.11.1) [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503295|emb|CAD02428.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29136934|gb|AAO68498.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56127291|gb|AAV76797.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093435|emb|CAR58890.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 476

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 1   MIRKN---KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           M  KN   +   +  D ET G     DR  +  A+    D++        +  P      
Sbjct: 1   MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLP 60

Query: 57  -PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI 113
            P A+ + GIT +  ++K  + ++        F       + +N  +FD         R 
Sbjct: 61  QPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRN 120

Query: 114 NKDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISH 154
             DP   S          +D +       P                L  L +  GI   H
Sbjct: 121 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIE--H 178

Query: 155 RSKHGALLDSHLL 167
            + H A+ D +  
Sbjct: 179 SNAHDAMADVYAT 191


>gi|16765397|ref|NP_461012.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167990978|ref|ZP_02572077.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168242135|ref|ZP_02667067.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194450582|ref|YP_002046116.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|16420598|gb|AAL20971.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194408886|gb|ACF69105.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205330564|gb|EDZ17328.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205338443|gb|EDZ25207.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|261247282|emb|CBG25107.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994119|gb|ACY89004.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158628|emb|CBW18140.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312913058|dbj|BAJ37032.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224713|gb|EFX49776.1| Exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|332989002|gb|AEF07985.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 476

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 1   MIRKN---KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           M  KN   +   +  D ET G     DR  +  A+    D++        +  P      
Sbjct: 1   MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLP 60

Query: 57  -PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI 113
            P A+ + GIT +  ++K  + ++        F       + +N  +FD         R 
Sbjct: 61  QPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRN 120

Query: 114 NKDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISH 154
             DP   S          +D +       P                L  L +  GI   H
Sbjct: 121 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIE--H 178

Query: 155 RSKHGALLDSHLL 167
            + H A+ D +  
Sbjct: 179 SNAHDAMADVYAT 191


>gi|297278520|ref|XP_001093178.2| PREDICTED: ERI1 exoribonuclease 3 isoform 1 [Macaca mulatta]
          Length = 335

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 133 MVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 192

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 193 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLKVM 251

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  + Q +     D  +    L  A         +N L  + K  G+++ H    H  + 
Sbjct: 252 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSGID 309

Query: 163 DSH 165
           D  
Sbjct: 310 DCK 312


>gi|296207750|ref|XP_002750780.1| PREDICTED: ERI1 exoribonuclease 3 [Callithrix jacchus]
          Length = 335

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 133 MVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 192

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 193 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLKVM 251

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  + Q +     D  +    L  A         +N L  + K  G+++ H    H  + 
Sbjct: 252 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSGID 309

Query: 163 DSH 165
           D  
Sbjct: 310 DCK 312


>gi|291399043|ref|XP_002715197.1| PREDICTED: prion protein interacting protein [Oryctolagus
           cuniculus]
          Length = 337

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 135 MVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 194

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 195 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLKVM 253

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  + Q +     D  +    L  A         +N L  + K  G+++ H    H  + 
Sbjct: 254 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSGID 311

Query: 163 DSH 165
           D  
Sbjct: 312 DCK 314


>gi|260437597|ref|ZP_05791413.1| exonuclease family protein [Butyrivibrio crossotus DSM 2876]
 gi|292809950|gb|EFF69155.1| exonuclease family protein [Butyrivibrio crossotus DSM 2876]
          Length = 327

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 65/182 (35%), Gaps = 23/182 (12%)

Query: 7   MRKIVFDIETTGLDSKND-----------RIIEIGAVELLDYSKTNRTFQVFLCPNG-RK 54
           M  IVFD+E    +   D            IIEIGAV+L    +   TF   + P   + 
Sbjct: 1   MNYIVFDLE---WNQCPDGKEKEIKDMPFEIIEIGAVKLDSQRRVIDTFAKNIAPGVYQT 57

Query: 55  NSPEALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL--Q 111
             P    L G T  E ++    F     EF ++  + +  +       D+  +       
Sbjct: 58  LHPVMQDLIGTTMGELVEKGVPFPQAVKEFMEWCGD-DYIFCTW-GCMDLTELQRNCDYY 115

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSS--RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           +IN +   P    D        +     R+ L ++     I + + + H A  D+   + 
Sbjct: 116 KINLNLPMPLIYYDLQKSYSICYDDGKKRSSLETVTADKNI-VQNEAFHSAFADAEYTAK 174

Query: 170 VY 171
           ++
Sbjct: 175 IF 176


>gi|229523521|ref|ZP_04412926.1| hypothetical protein VCA_001085 [Vibrio cholerae bv. albensis
           VL426]
 gi|229337102|gb|EEO02119.1| hypothetical protein VCA_001085 [Vibrio cholerae bv. albensis
           VL426]
          Length = 176

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 69/184 (37%), Gaps = 20/184 (10%)

Query: 4   KNKMRKIVFDIE----------TTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNG 52
            N  R + FD+E          TTG       IIEIG  E+ L   +  +  Q F+ P  
Sbjct: 1   MNYNRVVCFDLEMCCWNENGVGTTG------EIIEIGLAEIDLAAGEIVKRAQYFVKPEK 54

Query: 53  RKNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            + S    +L GIT   + K     + +       F   N  + +   + D+  +N   +
Sbjct: 55  DEISLFCAELTGITPRKIEKQGRPLAEVIQSMVKNFGGSNKIYASW-GRDDLILLNECQE 113

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +    P      + TL   + +    R    +  +  GI    R  H   +D++ L+ + 
Sbjct: 114 KGLSVPFQEFLNLATLYRIQHRLKDKRIGHRAAQESQGIEWEGRQ-HSGYIDAYNLAKLA 172

Query: 172 IKMM 175
           + M+
Sbjct: 173 LTML 176


>gi|149693719|ref|XP_001497227.1| PREDICTED: prion protein interacting protein [Equus caballus]
          Length = 337

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 135 MVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 194

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 195 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLKVM 253

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  + Q +     D  +    L  A         +N L  + K  G+++ H    H  + 
Sbjct: 254 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSGID 311

Query: 163 DSH 165
           D  
Sbjct: 312 DCK 314


>gi|149376775|ref|ZP_01894532.1| Exonuclease I [Marinobacter algicola DG893]
 gi|149358896|gb|EDM47363.1| Exonuclease I [Marinobacter algicola DG893]
          Length = 481

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 64/178 (35%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDE-F 69
           D ET G+D  +DR  +   V    D +       ++  P +    SPEA  + GIT +  
Sbjct: 9   DYETFGVDPIHDRPSQFAGVRTDADLNIIEDPLIIYCAPADDYVPSPEACLITGITPQKA 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L++    +   ++  + F++     + +N+ +FD       L R  +DP           
Sbjct: 69  LEEGFPEAEFIAQINEAFSQPGTCAVGYNSLRFDDEVSRHTLYRNLRDPYAREWQNGNSR 128

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              ID + +     P                L  L    GI  +H + H A+ D    
Sbjct: 129 WDIIDMVRLTYALRPEGIQWPKKEDGSPSFRLEELTVANGI--AHEAAHDAMSDVEAT 184


>gi|119627448|gb|EAX07043.1| prion protein interacting protein, isoform CRA_b [Homo sapiens]
          Length = 206

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 4   MVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 63

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 64  QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLKVM 122

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  + Q +     D  +    L  A         +N L  + K  G+++ H    H  + 
Sbjct: 123 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSGID 180

Query: 163 DSH 165
           D  
Sbjct: 181 DCK 183


>gi|297278522|ref|XP_002801563.1| PREDICTED: ERI1 exoribonuclease 3 isoform 2 [Macaca mulatta]
 gi|119627449|gb|EAX07044.1| prion protein interacting protein, isoform CRA_c [Homo sapiens]
 gi|194387402|dbj|BAG60065.1| unnamed protein product [Homo sapiens]
          Length = 259

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 57  MVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 116

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 117 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLKVM 175

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  + Q +     D  +    L  A         +N L  + K  G+++ H    H  + 
Sbjct: 176 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSGID 233

Query: 163 DSH 165
           D  
Sbjct: 234 DCK 236


>gi|74136559|ref|NP_076971.1| ERI1 exoribonuclease 3 [Homo sapiens]
 gi|332259224|ref|XP_003278687.1| PREDICTED: ERI1 exoribonuclease 3 [Nomascus leucogenys]
 gi|332808745|ref|XP_513102.3| PREDICTED: ERI1 exoribonuclease 3 [Pan troglodytes]
 gi|172045564|sp|O43414|ERI3_HUMAN RecName: Full=ERI1 exoribonuclease 3; AltName: Full=Prion
           interactor 1; AltName: Full=Prion protein-interacting
           protein
 gi|55959494|emb|CAI12494.1| prion protein interacting protein [Homo sapiens]
 gi|56203068|emb|CAI23196.1| prion protein interacting protein [Homo sapiens]
 gi|158254566|dbj|BAF83256.1| unnamed protein product [Homo sapiens]
 gi|162319286|gb|AAI56813.1| Exoribonuclease 3 [synthetic construct]
 gi|261860912|dbj|BAI46978.1| exoribonuclease 3 [synthetic construct]
          Length = 337

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 135 MVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 194

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 195 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLKVM 253

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  + Q +     D  +    L  A         +N L  + K  G+++ H    H  + 
Sbjct: 254 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSGID 311

Query: 163 DSH 165
           D  
Sbjct: 312 DCK 314


>gi|2852640|gb|AAC19158.1| unknown [Homo sapiens]
          Length = 397

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 195 MVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 254

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 255 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLKVM 313

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  + Q +     D  +    L  A         +N L  + K  G+++ H    H  + 
Sbjct: 314 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSGID 371

Query: 163 DSH 165
           D  
Sbjct: 372 DCK 374


>gi|153008882|ref|YP_001370097.1| exonuclease RNase T and DNA polymerase III [Ochrobactrum anthropi
           ATCC 49188]
 gi|151560770|gb|ABS14268.1| Exonuclease RNase T and DNA polymerase III [Ochrobactrum anthropi
           ATCC 49188]
          Length = 213

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 78/206 (37%), Gaps = 24/206 (11%)

Query: 8   RKIVFDIETTGL-------DSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE- 58
           + + FD ET GL       D++   R+  +  +   +     +    ++ P+G       
Sbjct: 6   KYLTFDTETNGLFNFKLPADAEGQPRLAHLAMIWADEDGNEIKRKDYYIRPDGWTMPQGP 65

Query: 59  --ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             A  ++G+TDEFL ++     ++   +     E+    +A NA++D+  +  EL+R   
Sbjct: 66  GSAGAVNGLTDEFLMENGGHIDAVLHAYTREI-ERGLIAVAFNAQYDLKIMRGELRRAGM 124

Query: 116 -DPLDPSRIIDTLSIARRKHPSSRN--------DLNSLCKRYGITISHRSKHGALLDSHL 166
            D  + +  I  +          +          L+   + +G ++     H A+ D+  
Sbjct: 125 PDLFEKTLNICVMRPMTGLCQLPKRNGFGFKFPKLSEALEYFGHSLEG--AHQAINDAEG 182

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRF 192
              V  ++M  G          ++R 
Sbjct: 183 ALIVMRELMRIGRLPEPAVHYAKNRP 208


>gi|170717586|ref|YP_001784670.1| exonuclease I [Haemophilus somnus 2336]
 gi|168825715|gb|ACA31086.1| Exodeoxyribonuclease I [Haemophilus somnus 2336]
          Length = 476

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 75/219 (34%), Gaps = 27/219 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEAL 60
            +N     ++D E+ G++   DR  +   +    D++        +    +    SPE++
Sbjct: 1   MQNDFSFFIYDYESFGINPATDRPAQFAGIRTDQDFNIIGEPVMFYCKQTDDYLPSPESV 60

Query: 61  KLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL 118
            + GIT +   +K         +    F+  N   + +N  ++D         R   DP 
Sbjct: 61  LVTGITPQICNEKGIPEPEFAEKILAEFSHPNTCIMGYNNVRYDDEMTRYTFYRNFIDPY 120

Query: 119 DPSRI--------IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHG 159
           + S          ID +       P   N            L  L +  GI   H + H 
Sbjct: 121 EYSWKNGNSRWDLIDVVRACYALRPDGINWAYDDDGMPSFRLEKLTQVNGIE--HGNAHD 178

Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
           A+ D +    + +  ++   Q        E+R  +E +K
Sbjct: 179 AMADVYAT--IAMAKLIKQKQPKLFQFFFENRGKREVEK 215


>gi|323130390|gb|ADX17820.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 476

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 1   MIRKN---KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           M  KN   +   +  D ET G     DR  +  A+    D++        +  P      
Sbjct: 1   MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLP 60

Query: 57  -PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI 113
            P A+ + GIT +  ++K  + ++        F       + +N  +FD         R 
Sbjct: 61  QPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRN 120

Query: 114 NKDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISH 154
             DP   S          +D +       P                L  L +  GI   H
Sbjct: 121 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIE--H 178

Query: 155 RSKHGALLDSHLL 167
            + H A+ D +  
Sbjct: 179 SNAHDAMADVYAT 191


>gi|307546135|ref|YP_003898614.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
 gi|307218159|emb|CBV43429.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
          Length = 208

 Score = 66.8 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 11/161 (6%)

Query: 22  KNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80
           ++   + I AV    D   T+ +  + +       + E ++ HG+    L D  S     
Sbjct: 44  RHGEPMAIAAVRLSGDRVLTSESLDLHVR-QPAGFTQETVRRHGLRGIDLDDGESLDKAL 102

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTLSIARRKHP---- 135
             F DF   +    +  N + ++  +N  L+ R   D  + +  +  L   R+++     
Sbjct: 103 ERFLDFVGNR--PLVGWNLEGELALLNRGLRPRFGFDLPNAAIDVAPLYQRRQRYRHPQL 160

Query: 136 SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             R       +R  + +  R  H AL D+   + +Y+++M 
Sbjct: 161 EGRPRFEEAAERLEVPMMGR--HSALGDAVTTALMYLRLMR 199


>gi|168229383|ref|ZP_02654441.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168466281|ref|ZP_02700151.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|194472204|ref|ZP_03078188.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205353209|ref|YP_002227010.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207857502|ref|YP_002244153.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|194458568|gb|EDX47407.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|195631242|gb|EDX49802.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|205272990|emb|CAR37938.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205335677|gb|EDZ22441.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|206709305|emb|CAR33645.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326628296|gb|EGE34639.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 476

 Score = 66.8 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 1   MIRKN---KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           M  KN   +   +  D ET G     DR  +  A+    D++        +  P      
Sbjct: 1   MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLP 60

Query: 57  -PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI 113
            P A+ + GIT +  ++K  + ++        F       + +N  +FD         R 
Sbjct: 61  QPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRN 120

Query: 114 NKDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISH 154
             DP   S          +D +       P                L  L +  GI   H
Sbjct: 121 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIE--H 178

Query: 155 RSKHGALLDSHLL 167
            + H A+ D +  
Sbjct: 179 SNAHDAMADVYAT 191


>gi|27375179|ref|NP_766708.1| exonuclease I [Bradyrhizobium japonicum USDA 110]
 gi|27348315|dbj|BAC45333.1| exonuclease I [Bradyrhizobium japonicum USDA 110]
          Length = 468

 Score = 66.8 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 35/192 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV------FLCPNGRKNSPEAL 60
           M  + FD ETTGL    D+I+   AV   +       F+        + P+     P AL
Sbjct: 1   MSFVFFDTETTGLKRGFDQILHFAAVRTDENLNEVARFETRSRLQPHVLPH-----PSAL 55

Query: 61  KLHGITDEFLKDK--PSFSSIFSEFWD-FFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           + +G+  E L D   PS  ++  +      +   A ++  N+ +FD   +   L +    
Sbjct: 56  RTNGLPIESLTDSSLPSHYTMVGDIRRTLISWSPAVFVGFNSIRFDEEMLRHALFQCLYP 115

Query: 117 PLDPSRI-------------IDTLSIARRKHPSSR-----NDLNSLCKRYGITISHRSKH 158
               S                D +S A+   P S        L  L    G+  +H   H
Sbjct: 116 AYLTSNHRNCRADALSLVMAADAVSPAQLVVPVSEEGRRTFRLQQLAAANGV--AHARAH 173

Query: 159 GALLDSHLLSDV 170
            A+ D     ++
Sbjct: 174 DAMSDVLATLEL 185


>gi|229032553|ref|ZP_04188518.1| Sporulation inhibitor KapD [Bacillus cereus AH1271]
 gi|228728738|gb|EEL79749.1| Sporulation inhibitor KapD [Bacillus cereus AH1271]
          Length = 207

 Score = 66.8 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 20/189 (10%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            ++ R +  D E T         G   +   IIE+G V ++   K   T+   + P    
Sbjct: 1   MDEQRFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSAHVRPKTFP 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +    K  GI  E +    SF  +  +  ++        +      D+  +    +  
Sbjct: 57  SLTDRCKKFLGIKQEVVDKGISFPELVEKLAEYEKRCKPTIVTW-GNMDMKVLKHNCEMA 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             D     +  D     ++     RN   L    + YG        H AL D+    +++
Sbjct: 116 RVDFPFLGQCRDLSLEYKKFF-GERNQTGLWKAIEAYG-KAGTGKHHCALDDAMTTYNIF 173

Query: 172 IKMMVGGSQ 180
            K++    +
Sbjct: 174 -KLVEKDKE 181


>gi|313242699|emb|CBY39490.1| unnamed protein product [Oikopleura dioica]
          Length = 481

 Score = 66.8 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 73/210 (34%), Gaps = 41/210 (19%)

Query: 3   RKNKMRKIVF--DIETTGLDSKNDRIIEIGAVELL------------DYSKTNRTFQVFL 48
           R   +   V   D ETTG  +++  I EI                  D+   N  F   +
Sbjct: 185 RGEDLNYTVIYYDTETTG-KARDCSICEIACWAQEFNKFECPSVYNPDHRGPN-VFYELM 242

Query: 49  CPNGRKNSPEALKLHGITDEF-----LKDKP-----SFSSIFSEFWDFFN--EQNAEWIA 96
            P+ RK S  A K++GI  E      ++ K      S +    +  ++     +    +A
Sbjct: 243 FPD-RKFSAGASKVNGIKKEGKTGLKVRGKVHKHVQSPAKAMGKMCEWLESFSKKVVLVA 301

Query: 97  HNAK-FDVGFINAELQRINKDPLDPSRII---DTLSIARRKHPSSRNDLNSLCKRY--GI 150
           H    +D   +  ++ R          I    DT+   +R  P  R  L  L + +  G 
Sbjct: 302 HFGTGYDHPILIRQMARAGLAERFQKSIFGFSDTMIPLKRTMPKQRLKLTVLGEEFIPGW 361

Query: 151 TISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +     H AL D      V+  +MV   Q
Sbjct: 362 NMYEGKAHTALFD------VWCMLMVFRMQ 385


>gi|302692530|ref|XP_003035944.1| hypothetical protein SCHCODRAFT_50758 [Schizophyllum commune H4-8]
 gi|300109640|gb|EFJ01042.1| hypothetical protein SCHCODRAFT_50758 [Schizophyllum commune H4-8]
          Length = 369

 Score = 66.8 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 65/226 (28%), Gaps = 57/226 (25%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN----DRIIE--IGAVELLD--------YSKTNRTFQVF 47
            R+N    +V D+E T +        + IIE  +  +   D          +   TF  F
Sbjct: 111 TRQNYDAFLVVDVEGTCMQGTTFSYPNEIIEFPVCLMRWRDKADDGTASELEVVDTFHSF 170

Query: 48  LCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE-------WIAHNA 99
           + P  R   S     L GIT   +   P F+ +   F+ F               + +  
Sbjct: 171 VRPTWRPVLSQFCTDLTGITQSQVDAAPPFADVLRSFYAFMIRHGLIDRRTGKRLVKYCW 230

Query: 100 KFDVGF-------INAELQRINKDPLDPSRIIDT-----------------------LSI 129
             D  F           L RI         ++D                           
Sbjct: 231 CSDGPFDLRDFVVKQCFLSRIVFPEWMRGDVLDVRVPVMQWMDEQSSSSDTSSTTSGSPP 290

Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD----SHLLSDV 170
           +    P  R  ++ +  +  G+      +H  + D      +L+++
Sbjct: 291 SSPMFPRRRTPNIPAQLRALGLPEFQGRQHSGIDDTRNICRILAEL 336


>gi|161378162|ref|NP_299304.2| exonuclease I [Xylella fastidiosa 9a5c]
          Length = 478

 Score = 66.8 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 76/210 (36%), Gaps = 30/210 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV    + +         + P +    SP+A  + GIT
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDTELNVIEEPISFLVKPADDLLPSPDATLITGIT 64

Query: 67  DEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR-- 122
            +   ++  + ++ F+         +   + +N  +FD  FI   L R   DP +     
Sbjct: 65  PQHAQREGINEAAAFTHIAMQMTRPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYEREWRN 124

Query: 123 ---IIDTLSIARRKH---PSSRN-----------DLNSLCKRYGITISHR--SKHGALLD 163
                D L + R  H   P   +            L  L     +    R  + H AL D
Sbjct: 125 GNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLA----LANHAREGAAHEALSD 180

Query: 164 SHLLSDVYIKMMVGGSQI-NFGFKTNEDRF 192
            +    +  K      ++ N+  +  + RF
Sbjct: 181 VYATISMARKFRTAQPRLWNYALQLRDKRF 210


>gi|303252408|ref|ZP_07338574.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307247643|ref|ZP_07529685.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302648867|gb|EFL79057.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306855855|gb|EFM88016.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 514

 Score = 66.8 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 75/222 (33%), Gaps = 28/222 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEA 59
           + KN +    +D E+ G+    DR  +   +    D++        +         SPEA
Sbjct: 1   MNKN-LTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEA 59

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQR 112
           + + GIT +    +        +     F++ N   + +N  ++D       F       
Sbjct: 60  VMVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDP 119

Query: 113 INKDPLDPSRIIDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKH 158
                 + +   D L + R  +                    L +L K  GI  +H + H
Sbjct: 120 YEYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGMPNFKLENLTKANGI--AHENAH 177

Query: 159 GALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A+ D +    + +  ++   Q        E+R  KE +K +
Sbjct: 178 DAMADVYAT--IAMAKLIKQKQPKLFQFFFENRGKKEIEKMI 217


>gi|317491333|ref|ZP_07949769.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920880|gb|EFV42203.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 474

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 64/198 (32%), Gaps = 27/198 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGIT 66
            ++ D ET G     DR  +   V    D++       ++  P+      PEA+ + GIT
Sbjct: 8   FLIHDYETFGQHPALDRPAQFAGVRTDADFNIIEEPLVIYCRPSDDYLPQPEAVMITGIT 67

Query: 67  DE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI- 123
            +  L    S +    +    F+      + +N  +FD         R   DP   S   
Sbjct: 68  PQVALTRGVSEAEFSRQINQIFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSWQN 127

Query: 124 -------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
                  +D L       P                L  L K  GI   H + H A+ D +
Sbjct: 128 GNSRWDLLDVLRTCYALRPEGINWPENEEGLPSFKLEHLSKANGIE--HENAHDAMADVY 185

Query: 166 LLSDVYIKMMVGGSQINF 183
               + +  +V  +Q   
Sbjct: 186 AT--IALAKLVKQAQPKL 201


>gi|253989171|ref|YP_003040527.1| exonuclease I [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253780621|emb|CAQ83783.1| exodeoxyribonuclease i (exonuclease i) (dn
           deoxyribophosphodiesterase) [Photorhabdus asymbiotica]
          Length = 476

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 65/200 (32%), Gaps = 29/200 (14%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           M   N+     + D ET G     DR  +   V   +D++       ++  P       P
Sbjct: 1   MKNSNEQPTFYIHDYETFGKHPALDRPAQFAGVRTDMDFNIIEDPLVIYCSPADDYLPQP 60

Query: 58  EALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           EA+ + GIT +  L+   + +    +  + F+  N   + +N  +FD         R   
Sbjct: 61  EAVMITGITPQVALEKGINEAEFARKIHNVFSVPNCCILGYNNIRFDDEVSRNIFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D L       P                L  L K  G+   H  
Sbjct: 121 DPYAYSWQKGNSRWDLLDVLRACYALRPEGIIWPENDDGLPSFKLEHLTKANGVE--HSH 178

Query: 157 KHGALLDSHLL---SDVYIK 173
            H A+ D +     + +  K
Sbjct: 179 AHDAMSDVYATIAMAKLLKK 198


>gi|293609598|ref|ZP_06691900.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828050|gb|EFF86413.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 234

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 34/236 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVF--LCPNGRKNS 56
           MI+   M+ I+ D ET    + N   IEI    +E+     T    ++F  L   G   S
Sbjct: 1   MIKGPVMQTIILDTET---HTLNGLPIEIAYAPIEINAGKLTLDKSKLFDQLYQVGTPIS 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
             A+ +H I +  L+++P     +  F     E     I HN  +D+    A + R   D
Sbjct: 58  YAAMAVHHILESDLENQP----HYKTFK--LPETTTYIIGHNIDYDI----AAIARCGVD 107

Query: 117 PLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISH-------RSKHGALLDSHLLS 168
            +   + I TL++AR+  P +  +++++L   Y I+          +  H A  D  L +
Sbjct: 108 -VSNIKPICTLALARKTWPDAEAHNISALI--YMISQGSSKARELLKGAHRADADIILTA 164

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDE 223
           ++ + ++      +   +  E+ +   E+  +P  I+  K        + K+ +  
Sbjct: 165 NILMHIVY-----HLNIQDIEELYRVSEEARIPTTINFGKHKGTAIAELPKDYIQW 215


>gi|322499398|emb|CBZ34471.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 570

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 79/231 (34%), Gaps = 36/231 (15%)

Query: 9   KIVFDIETTGLDSKNDR------IIEIGAVELLDYSKT-NRTFQVFLCPNGRKN-SPEAL 60
            +V D E T    + DR      +IE   + +   + T    FQ ++ P      S    
Sbjct: 58  YVVLDFEAT---CEEDRRIADAEVIEFPMILVDARTATPVAEFQRYVRPVKNPVLSRFCT 114

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQN--------AEWIAHNAKFDVG-FINAELQ 111
           +L GIT + +  +  F  ++ E   F  E          +  +     +D+   + A+++
Sbjct: 115 ELTGITQDMVSGRDPFPVVYCEALQFLAEAGLGDAPPMRSYCVVTCGDWDLKTMLPAQMR 174

Query: 112 RIN--KDPLDPSRIIDTLSIARRKH------------PSSRNDLNSLCKRYGITISHRSK 157
                  PL   R  +      +              P   + +  + +  G+ +  R  
Sbjct: 175 VSGQQGTPLSFQRWCNLKKCMSQLGFGNGSGCGGAAPPLRPSGMPDMLQMLGLPLQGR-H 233

Query: 158 HGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFF-KEEKKTVPNISLLK 207
           H  + D   L+ V   ++  G  I+  F T   R +    +  +P +  L 
Sbjct: 234 HSGIDDCRNLTAVLCALLRRGLVIDVTFSTAPFRRWHAPTEAQLPALDALP 284


>gi|290968369|ref|ZP_06559909.1| exonuclease [Megasphaera genomosp. type_1 str. 28L]
 gi|290781556|gb|EFD94144.1| exonuclease [Megasphaera genomosp. type_1 str. 28L]
          Length = 221

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 23/186 (12%)

Query: 7   MRKIVFDIETTGLDSKN--------DRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSP 57
           M+ +  D E   +D ++          IIEIGAV+L +  K    ++ ++CP    + + 
Sbjct: 1   MKAVFVDFEMNPIDRRHQEARRICQGEIIEIGAVKLDEDGKEIGAYKEYICPEYTSQMNA 60

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRIN 114
               L GIT + L     F ++F+ F  + NE      E  A  ++ D   +  E+ R+ 
Sbjct: 61  TCQALTGITMDMLTPAAHFQTVFAHFLAWCNEDAPNAYEMYAW-SENDWHQLTCEM-RLK 118

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRN--------DLNSLCKRYGITISHRSKHGALLDSHL 166
           +  ++  +I   L   +       N         L+      G +   +  H AL D+  
Sbjct: 119 QSDMNDPQIRWMLDHWQNFQQIFCNLLGLDNVISLDKAVTLLGTSFVGK-MHDALWDARN 177

Query: 167 LSDVYI 172
            S +Y+
Sbjct: 178 TSQLYV 183


>gi|188533503|ref|YP_001907300.1| exonuclease I [Erwinia tasmaniensis Et1/99]
 gi|188028545|emb|CAO96407.1| Exodeoxyribonuclease I [Erwinia tasmaniensis Et1/99]
          Length = 475

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G     DR  +  A+   +D++        +  P       PEA+ + GIT +  
Sbjct: 14  DYETFGTSPSLDRPAQFAALRTDMDFNPIGEPEVFYCRPADDYLPQPEAVMVTGITPQIA 73

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           + +  + +         F+  N   + +N  +FD         R   DP   S       
Sbjct: 74  RARGLNEAEFTQRIHQLFSAPNTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWSWQHGNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L K  G+  +H + H A+ D +  
Sbjct: 134 WDLLDVMRACYALRPDGIVWPENDDGFPSFRLEHLTKANGV--AHENAHDAMSDVYAT 189


>gi|28056789|gb|AAO28661.1| exodeoxyribonuclease I [Xylella fastidiosa Temecula1]
          Length = 494

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 75/210 (35%), Gaps = 30/210 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV      +         + P +    SP A  + GIT
Sbjct: 21  FLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGIT 80

Query: 67  DEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR-- 122
            +   ++  + ++ F+       + +   + +N  +FD  FI   L R   DP +     
Sbjct: 81  PQHAQREGINEAAAFAHIAMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYEREWRN 140

Query: 123 ---IIDTLSIARRKH---PSSRN-----------DLNSLCKRYGITISHR--SKHGALLD 163
                D L + R  H   P   +            L  L     +    R  + H AL D
Sbjct: 141 GNSRWDLLDMLRLMHAVRPEGIHWPTREDGAPSFKLEHLA----LANHAREGTAHEALSD 196

Query: 164 SHLLSDVYIKMMVGGSQI-NFGFKTNEDRF 192
            +    +  K      ++ N+  +  + RF
Sbjct: 197 VYATISMARKFRAAQPRLWNYALQLRDKRF 226


>gi|238895590|ref|YP_002920325.1| exonuclease I [Klebsiella pneumoniae NTUH-K2044]
 gi|238547907|dbj|BAH64258.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 474

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 54/178 (30%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITD-EF 69
           D ET G     DR  +  A+    + +        +  P       P+A+ + GIT  E 
Sbjct: 14  DYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGITPQEA 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L    + ++      D F       + +N  +FD         R   DP   S       
Sbjct: 74  LAKGDNEATFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L    GI   H++ H A+ D +  
Sbjct: 134 WDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIE--HQNAHDAMADVYAT 189


>gi|197263773|ref|ZP_03163847.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197242028|gb|EDY24648.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
          Length = 476

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 1   MIRKN---KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           M  KN   +   +  D ET G     DR  +  A+    D++        +  P      
Sbjct: 1   MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLP 60

Query: 57  -PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI 113
            P A+ + GIT +  ++K  + ++        F       + +N  +FD         R 
Sbjct: 61  QPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRN 120

Query: 114 NKDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISH 154
             DP   S          +D +       P                L  L +  GI   H
Sbjct: 121 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIE--H 178

Query: 155 RSKHGALLDSHLL 167
            + H A+ D +  
Sbjct: 179 SNAHDAMADVYAT 191


>gi|152971008|ref|YP_001336117.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150955857|gb|ABR77887.1| 3' --> 5' specific exonuclease I [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 474

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 54/178 (30%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITD-EF 69
           D ET G     DR  +  A+    + +        +  P       P+A+ + GIT  E 
Sbjct: 14  DYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGITPQEA 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L    + ++      D F       + +N  +FD         R   DP   S       
Sbjct: 74  LAKGDNEATFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L    GI   H++ H A+ D +  
Sbjct: 134 WDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIE--HQNAHDAMADVYAT 189


>gi|258624410|ref|ZP_05719357.1| exodeoxyribonuclease I [Vibrio mimicus VM603]
 gi|258583257|gb|EEW08059.1| exodeoxyribonuclease I [Vibrio mimicus VM603]
          Length = 474

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 67/204 (32%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPE 58
           M ++++     FD ET G++   DR  +   V   +D++       ++   PN    +PE
Sbjct: 1   MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +             +      +  N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKANSLGLPEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQHGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HNAMADVIATIELAKKIKAAQPKL 202


>gi|86608996|ref|YP_477758.1| exonuclease family protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557538|gb|ABD02495.1| exonuclease family protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 783

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 60/181 (33%), Gaps = 40/181 (22%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  +V D E       N  + EI  ++          +  +                  T
Sbjct: 1   MSYLVIDTE------GNANLEEIALIDSSGKLI----YHAY------------------T 32

Query: 67  DEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            E+    P     + I ++       Q    + H+A  D+  +     ++N+D L P+ I
Sbjct: 33  QEYSPHHPQPKPLAQIVADLRRL--AQGKTLVFHHADHDLKILKQAFDQVNQDWL-PNPI 89

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMMVG 177
             T S A++  P+ +   L  L K  GI +       +  H A  D+     +Y  +   
Sbjct: 90  FCTWSAAKQCFPNLAGYSLEYLSKHLGIQLESGYFNSKLAHDASYDALFTYHLYRHLTHA 149

Query: 178 G 178
            
Sbjct: 150 Q 150


>gi|300864441|ref|ZP_07109312.1| Exonuclease RNase T and DNA polymerase III [Oscillatoria sp. PCC
           6506]
 gi|300337585|emb|CBN54460.1| Exonuclease RNase T and DNA polymerase III [Oscillatoria sp. PCC
           6506]
          Length = 192

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 68/193 (35%), Gaps = 18/193 (9%)

Query: 1   MIRKNKMRKIVFDIETTG-----LDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRK 54
           M  K+    +V D+E T      ++ ++  IIEIGAV +          FQ F+ P    
Sbjct: 5   MNLKHYNYYLVLDLEATCCDRETINREHMEIIEIGAVMVEPKNLTIVDEFQTFIKPVRHP 64

Query: 55  NSPEALK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
              E  K L  I+ + +   P++    +   ++ +  +         +D      +    
Sbjct: 65  ILTEFCKSLTSISQKQVDLAPTYPEAIALLKNWLSGYSNAVFGSWGDYDRKQFQQDSNFH 124

Query: 114 NKDPLDPSRIID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                     ++     T     RK P     L  +    G+ +   + H  + D+  ++
Sbjct: 125 KVPFPIAYPHVNLKQLFTEQQGLRKRPGMAKALQLV----GLPLEG-THHRGIDDARNIA 179

Query: 169 DVYIKMMVGGSQI 181
            +   ++ G  Q+
Sbjct: 180 KLLPYIL-GEKQL 191


>gi|289628502|ref|ZP_06461456.1| exonuclease I [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289648244|ref|ZP_06479587.1| exonuclease I [Pseudomonas syringae pv. aesculi str. 2250]
 gi|320325491|gb|EFW81553.1| exonuclease I [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327221|gb|EFW83235.1| exonuclease I [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330868768|gb|EGH03477.1| exonuclease I [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330880763|gb|EGH14912.1| exonuclease I [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330987779|gb|EGH85882.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 476

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 67/232 (28%), Gaps = 38/232 (16%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--------NGRKNSPEALKLHG 64
           D ETTG++ +NDR +++  +       T+        P        +     P A  + G
Sbjct: 9   DYETTGINPRNDRALQMAGIR------TDTELNEIAPPVNLHCQLSDDILPHPVACMITG 62

Query: 65  ITDEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122
           IT   L +K        +      +        +N  +FD         R   DP     
Sbjct: 63  ITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREW 122

Query: 123 I--------IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDS 164
                    ID +  A    P               L  L    GI   H   H AL D 
Sbjct: 123 QGGNSRWDLIDVVRAAYALRPDGIVWPEQDGRVTLKLERLTAANGID--HGQAHDALSDV 180

Query: 165 HLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                + +  ++   Q          R  ++ ++ V  +  L      F+  
Sbjct: 181 RAT--IALARLIREKQPKLYDYLFALRSKQKVQEQVRLMQPLVHISGRFSAA 230


>gi|165976088|ref|YP_001651681.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|307256692|ref|ZP_07538471.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|165876189|gb|ABY69237.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|306864740|gb|EFM96644.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 514

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 75/222 (33%), Gaps = 28/222 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEA 59
           + KN +    +D E+ G+    DR  +   +    D++        +         SPEA
Sbjct: 1   MNKN-LTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEA 59

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQR 112
           + + GIT +    +        +     F++ N   + +N  ++D       F       
Sbjct: 60  VMVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDP 119

Query: 113 INKDPLDPSRIIDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKH 158
                 + +   D L + R  +                    L +L K  GI  +H + H
Sbjct: 120 YEYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGMPNFKLENLTKANGI--AHENAH 177

Query: 159 GALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A+ D +    + +  ++   Q        E+R  KE +K +
Sbjct: 178 DAMADVYAT--IAMAKLIKQKQPKLFQFFFENRGKKEIEKMI 217


>gi|15641389|ref|NP_231021.1| hypothetical protein VC1377 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121588011|ref|ZP_01677763.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121728525|ref|ZP_01681548.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147675170|ref|YP_001216938.1| hypothetical protein VC0395_A0992 [Vibrio cholerae O395]
 gi|153212725|ref|ZP_01948382.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153817774|ref|ZP_01970441.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153821312|ref|ZP_01973979.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|153825269|ref|ZP_01977936.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|153828771|ref|ZP_01981438.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|183179375|ref|ZP_02957586.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|227081548|ref|YP_002810099.1| hypothetical protein VCM66_1332 [Vibrio cholerae M66-2]
 gi|229505042|ref|ZP_04394552.1| hypothetical protein VCF_000248 [Vibrio cholerae BX 330286]
 gi|229511288|ref|ZP_04400767.1| hypothetical protein VCE_002695 [Vibrio cholerae B33]
 gi|229515749|ref|ZP_04405208.1| hypothetical protein VCB_003407 [Vibrio cholerae TMA 21]
 gi|229518406|ref|ZP_04407850.1| hypothetical protein VCC_002430 [Vibrio cholerae RC9]
 gi|229521489|ref|ZP_04410908.1| hypothetical protein VIF_002026 [Vibrio cholerae TM 11079-80]
 gi|229529547|ref|ZP_04418937.1| hypothetical protein VCG_002642 [Vibrio cholerae 12129(1)]
 gi|229608046|ref|YP_002878694.1| hypothetical protein VCD_002964 [Vibrio cholerae MJ-1236]
 gi|254225334|ref|ZP_04918946.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|254286171|ref|ZP_04961131.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|254848499|ref|ZP_05237849.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297578962|ref|ZP_06940890.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|298498539|ref|ZP_07008346.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9655872|gb|AAF94535.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547752|gb|EAX57843.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121629189|gb|EAX61629.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|124116375|gb|EAY35195.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|125622175|gb|EAZ50497.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|126511712|gb|EAZ74306.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126521130|gb|EAZ78353.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|146317053|gb|ABQ21592.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|148875724|gb|EDL73859.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|149741097|gb|EDM55156.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|150423840|gb|EDN15781.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|183012786|gb|EDT88086.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|227009436|gb|ACP05648.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227013292|gb|ACP09502.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229333321|gb|EEN98807.1| hypothetical protein VCG_002642 [Vibrio cholerae 12129(1)]
 gi|229341587|gb|EEO06590.1| hypothetical protein VIF_002026 [Vibrio cholerae TM 11079-80]
 gi|229345121|gb|EEO10095.1| hypothetical protein VCC_002430 [Vibrio cholerae RC9]
 gi|229347518|gb|EEO12478.1| hypothetical protein VCB_003407 [Vibrio cholerae TMA 21]
 gi|229351253|gb|EEO16194.1| hypothetical protein VCE_002695 [Vibrio cholerae B33]
 gi|229357265|gb|EEO22182.1| hypothetical protein VCF_000248 [Vibrio cholerae BX 330286]
 gi|229370701|gb|ACQ61124.1| hypothetical protein VCD_002964 [Vibrio cholerae MJ-1236]
 gi|254844204|gb|EET22618.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297536556|gb|EFH75389.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297542872|gb|EFH78922.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|327484047|gb|AEA78454.1| hypothetical protein VCLMA_A1213 [Vibrio cholerae LMA3894-4]
          Length = 176

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 69/184 (37%), Gaps = 20/184 (10%)

Query: 4   KNKMRKIVFDIE----------TTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNG 52
            N  R + FD+E          TTG       IIEIG  E+ L   +  +  Q F+ P  
Sbjct: 1   MNYNRVVCFDLEMCCWNENGVGTTG------EIIEIGLAEIDLAAGEIVKRAQYFVKPEK 54

Query: 53  RKNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            + S    +L GIT   + K     + +       F   N  + +   + D+  +N   +
Sbjct: 55  DEISLFCAELTGITPRKIEKQGRPLAEVIQSMVKNFGGSNKIYASW-GRDDLILLNECRE 113

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +    P      + TL   + +    R    +  +  GI    R  H   +D++ L+ + 
Sbjct: 114 KGLSVPFQEFLNLATLYRIQHRLKDKRIGHRAAQESQGIEWEGRQ-HSGYVDAYNLAKLA 172

Query: 172 IKMM 175
           + M+
Sbjct: 173 LTML 176


>gi|289679622|ref|ZP_06500512.1| exonuclease [Pseudomonas syringae pv. syringae FF5]
 gi|330897689|gb|EGH29108.1| exonuclease [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330981951|gb|EGH80054.1| exonuclease [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 180

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 10/172 (5%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E T    G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINKD-PLDP 120
            I    +      ++++ +F  + +   A  +   +   +D   +  E +  + D  L  
Sbjct: 64  HINQSSIDSAAPLTTVWPQFERWLSHHRARIVGWASWGDYDRQQLEEEWRHHHLDSALSS 123

Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              ++     A+ +H      LNS  +  G+  S +  H AL+D+   + + 
Sbjct: 124 MPHVNLKQRFAQARHLQKPMGLNSALQLAGMQFSGQQ-HRALVDARNTARLL 174


>gi|300723649|ref|YP_003712954.1| exonuclease I [Xenorhabdus nematophila ATCC 19061]
 gi|297630171|emb|CBJ90808.1| exonuclease I, 3'-> 5'-specific; deoxyribophosphodiesterase
           [Xenorhabdus nematophila ATCC 19061]
          Length = 476

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 56/178 (31%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDE-F 69
           D ET G     DR  +   V    D++       V+  P +     PEA+ + GIT +  
Sbjct: 14  DYETFGKHPALDRPAQFAGVRTDSDFNIIEEPLVVYCAPADDYLPDPEAVMITGITPQQA 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L    +      +  +  ++ N   + +N  +FD         R   DP   S       
Sbjct: 74  LTKGVNEVEFARQIHEVLSKPNTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQKGNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D L       P                L  L K  GI   H   H A+ D +  
Sbjct: 134 WDLLDVLRACYALRPEGIIWPENDDGLPSFKLEHLTKANGIE--HTHAHDAMSDVYAT 189


>gi|197302182|ref|ZP_03167241.1| hypothetical protein RUMLAC_00908 [Ruminococcus lactaris ATCC
           29176]
 gi|197298613|gb|EDY33154.1| hypothetical protein RUMLAC_00908 [Ruminococcus lactaris ATCC
           29176]
          Length = 231

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 71/194 (36%), Gaps = 21/194 (10%)

Query: 2   IRKNK----MRKIVFDIETTGLDSKN--------DRIIEIGAVELLDYSKTNRTFQVFLC 49
           ++KNK    M  +V D+E   +              II+IGAV L +  +      +++ 
Sbjct: 4   LKKNKRRICMNYLVIDLEMCKVPKDYRNKNYKYASEIIQIGAVLLDERYRRRDEICLYVH 63

Query: 50  PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           P           + GI +  +K+ P       E  ++  ++  +  A +   D   ++ E
Sbjct: 64  PEHGVIDNFIANMTGIKNRQIKNAPKLRERLLELTEWIGDREYQVFAWSNS-DFSQLSHE 122

Query: 110 LQRINK------DPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALL 162
           ++            + P R ID   +  +K+   +   L        +T   R  H  L 
Sbjct: 123 VRSKKLQDEKIQSFMAPERWIDYQEVFGKKYSFEKAVSLQEALMLCDLTQDGR-MHDGLD 181

Query: 163 DSHLLSDVYIKMMV 176
           D+   + +  K+ +
Sbjct: 182 DALNTAKLIRKLEL 195


>gi|187469812|gb|AAI67080.1| Unknown (protein for IMAGE:8363520) [Rattus norvegicus]
          Length = 292

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 90  MVPFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 149

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 150 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLKVM 208

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  +   +     D  +    L  A         +N L  + K  G+++ H    H  + 
Sbjct: 209 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSGID 266

Query: 163 DSH 165
           D  
Sbjct: 267 DCK 269


>gi|293347578|ref|XP_001071982.2| PREDICTED: exoribonuclease 3 [Rattus norvegicus]
 gi|149035532|gb|EDL90213.1| similar to prion protein interacting protein 1, isoform CRA_a
           [Rattus norvegicus]
          Length = 337

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 135 MVPFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 194

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 195 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLKVM 253

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  +   +     D  +    L  A         +N L  + K  G+++ H    H  + 
Sbjct: 254 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSGID 311

Query: 163 DSH 165
           D  
Sbjct: 312 DCK 314


>gi|148698603|gb|EDL30550.1| prion protein interacting protein 1, isoform CRA_a [Mus musculus]
          Length = 259

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 57  MVPFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 116

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 117 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLKVM 175

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  +   +     D  +    L  A         +N L  + K  G+++ H    H  + 
Sbjct: 176 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSGID 233

Query: 163 DSH 165
           D  
Sbjct: 234 DCK 236


>gi|109730985|gb|AAI17541.1| Eri3 protein [Mus musculus]
          Length = 296

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 94  MVPFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 153

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 154 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLKVM 212

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  +   +     D  +    L  A         +N L  + K  G+++ H    H  + 
Sbjct: 213 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSGID 270

Query: 163 DSH 165
           D  
Sbjct: 271 DCK 273


>gi|28174986|gb|AAH21405.2| Eri3 protein [Mus musculus]
          Length = 264

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 62  MVPFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 121

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 122 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLKVM 180

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  +   +     D  +    L  A         +N L  + K  G+++ H    H  + 
Sbjct: 181 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSGID 238

Query: 163 DSH 165
           D  
Sbjct: 239 DCK 241


>gi|33859765|ref|NP_536717.2| ERI1 exoribonuclease 3 [Mus musculus]
 gi|81913994|sp|Q8C460|ERI3_MOUSE RecName: Full=ERI1 exoribonuclease 3; AltName: Full=Prion
           interactor 1; AltName: Full=Prion protein-interacting
           protein
 gi|26350187|dbj|BAC38733.1| unnamed protein product [Mus musculus]
 gi|74184336|dbj|BAE25703.1| unnamed protein product [Mus musculus]
 gi|109733321|gb|AAI16686.1| Exoribonuclease 3 [Mus musculus]
 gi|123121719|emb|CAM27529.1| prion protein interacting protein 1 [Mus musculus]
 gi|123261242|emb|CAM23618.1| prion protein interacting protein 1 [Mus musculus]
          Length = 337

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 135 MVPFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 194

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 195 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLKVM 253

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  +   +     D  +    L  A         +N L  + K  G+++ H    H  + 
Sbjct: 254 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSGID 311

Query: 163 DSH 165
           D  
Sbjct: 312 DCK 314


>gi|260663140|ref|ZP_05864032.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
 gi|260552332|gb|EEX25383.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
          Length = 361

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 19/180 (10%)

Query: 8   RKIVFDIE-TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL-HGI 65
           +  + D+E  T   ++    +EIG V+  +  K  + F  F+         EA  +  GI
Sbjct: 15  KYYMLDLEFATHKKTREHLPLEIGVVKYQNGRKVGKQFHRFV----YWADAEADDILRGI 70

Query: 66  TDEFL-----KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD- 119
               +     K +  +  I ++  +F  + +      N   D+  +   ++      +D 
Sbjct: 71  DYANVTYKTYKKQGQWDKIVADLLNFI-DFSLPIGGWNVHGDLQVLLEAIKNHGGPLVDE 129

Query: 120 ---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +D L     + P+    L  + +  G  +S+   H AL D  L + VY  ++ 
Sbjct: 130 KAVCCFEVDELVSWLGELPNKP-SLRGVGRLLGFDVSN--MHHALSDVLLTAQVYDYLVA 186


>gi|262402419|ref|ZP_06078980.1| exodeoxyribonuclease I [Vibrio sp. RC586]
 gi|262351201|gb|EEZ00334.1| exodeoxyribonuclease I [Vibrio sp. RC586]
          Length = 474

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 66/204 (32%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPE 58
           M ++ +     FD ET G++   DR  +   V   +D++       ++   PN    +PE
Sbjct: 1   MQQEYQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +             +      +  N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKANSLGLPEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQHGNSRWDLLDVIRACYALRPEGIEWPENDEGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIELAKKIKAAQPKL 202


>gi|330973535|gb|EGH73601.1| exonuclease I [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 476

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 68/226 (30%), Gaps = 26/226 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ +NDR +++  +    D ++      +    +      P A  + GIT   L
Sbjct: 9   DYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMITGITPATL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +K        +      +        +N  +FD         R   DP           
Sbjct: 69  AEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    GI   H   H AL D      +
Sbjct: 129 WDLIDVVRAAYALRPDGIVWPEQDGRVTLKLERLTAANGID--HGQAHDALSDVRAT--I 184

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            +  ++   Q          R  ++ ++ V  +  L      F+  
Sbjct: 185 ALARLIREKQPKLYDYLFALRSKQKVQEQVRLMQPLVHISGRFSAA 230


>gi|330950132|gb|EGH50392.1| exonuclease I [Pseudomonas syringae Cit 7]
          Length = 476

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 68/226 (30%), Gaps = 26/226 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ ++DR +++  +    D ++      +    +      P A  + GIT   L
Sbjct: 9   DYETTGINPRSDRALQMAGIRTDTDLNEIAAPVNLHCQLSDDILPHPAACMITGITPATL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +K        +      +        +N  +FD         R   DP           
Sbjct: 69  AEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    GI   H   H AL D      +
Sbjct: 129 WDLIDVVRAAYALRPDGIVWPEQDGRVTLKLERLTAANGID--HGQAHDALSDVRAT--I 184

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            +  ++   Q          R  ++ ++ V  +  L      F+  
Sbjct: 185 ALARLIREKQPKLYDYFFALRSKQKVQEQVRLMQPLVHISGRFSAA 230


>gi|307249878|ref|ZP_07531852.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306858067|gb|EFM90149.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 514

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 76/222 (34%), Gaps = 28/222 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEA 59
           + KN +    +D E+ G+    DR  +   +    D++        +         SPEA
Sbjct: 1   MNKN-LTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEA 59

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQR 112
           + + GIT +    +        +     F++ N   + +N  ++D       F       
Sbjct: 60  VMVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDP 119

Query: 113 INKDPLDPSRIIDTLSIARRKH---PSS-----------RNDLNSLCKRYGITISHRSKH 158
                 + +   D L + R  +   P                L +L K  GI  +H + H
Sbjct: 120 YEYSWKNGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGI--AHENAH 177

Query: 159 GALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A+ D +    + +  ++   Q        E+R  KE +K +
Sbjct: 178 DAMADVYAT--IAMAKLIKQKQPKLFQFFFENRGKKEIEKMI 217


>gi|161484692|ref|NP_779012.2| exonuclease I [Xylella fastidiosa Temecula1]
 gi|182681388|ref|YP_001829548.1| exonuclease I [Xylella fastidiosa M23]
 gi|182631498|gb|ACB92274.1| Exodeoxyribonuclease I [Xylella fastidiosa M23]
 gi|307579833|gb|ADN63802.1| exonuclease I [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 478

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 75/210 (35%), Gaps = 30/210 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV      +         + P +    SP A  + GIT
Sbjct: 5   FLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGIT 64

Query: 67  DEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR-- 122
            +   ++  + ++ F+       + +   + +N  +FD  FI   L R   DP +     
Sbjct: 65  PQHAQREGINEAAAFAHIAMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYEREWRN 124

Query: 123 ---IIDTLSIARRKH---PSSRN-----------DLNSLCKRYGITISHR--SKHGALLD 163
                D L + R  H   P   +            L  L     +    R  + H AL D
Sbjct: 125 GNSRWDLLDMLRLMHAVRPEGIHWPTREDGAPSFKLEHLA----LANHAREGTAHEALSD 180

Query: 164 SHLLSDVYIKMMVGGSQI-NFGFKTNEDRF 192
            +    +  K      ++ N+  +  + RF
Sbjct: 181 VYATISMARKFRAAQPRLWNYALQLRDKRF 210


>gi|158337902|ref|YP_001519078.1| exonuclease [Acaryochloris marina MBIC11017]
 gi|158308143|gb|ABW29760.1| exonuclease [Acaryochloris marina MBIC11017]
          Length = 183

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 19/177 (10%)

Query: 2   IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKN 55
           ++ ++   ++ D+E T  D      +   +IEIGAV       +    +Q F+ P     
Sbjct: 1   MKISQKYYLIVDLEATCADDNSIPRRRMEMIEIGAVLLNSQTLQIESEYQTFIKPILHPV 60

Query: 56  SPEALK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             E  K L  I+ + ++  P F +   +F  +F    +        +D      + Q   
Sbjct: 61  LTEFCKSLTSISQQDIEKAPLFPAALKDFQSWFYPCGSYLFCSWGDYDRHQFVQDCQMHG 120

Query: 115 ------KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
                  D L+  R   +   +++K   +     +L +  G+ +     H  + D+ 
Sbjct: 121 VGYPFPGDHLNLKRAFSSEINSKKKFGMA----GALTE-LGLELEG-VHHRGIDDAR 171


>gi|52425136|ref|YP_088273.1| exonuclease I [Mannheimia succiniciproducens MBEL55E]
 gi|52307188|gb|AAU37688.1| SbcB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 472

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 61/180 (33%), Gaps = 25/180 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE 68
           ++D E+ G++  +DR  +   +    D++  +     +          PEA+ + GIT +
Sbjct: 8   IYDFESFGVNPADDRPAQFAGIRTDKDFNIISDPVMFYCKQTNDYLPAPEAVMVTGITPQ 67

Query: 69  FLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--- 123
              +K  S     +     F++ N   +  N  ++D         R   DP + S     
Sbjct: 68  ECNEKGISEPEFAARILAEFSQPNTCIMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKNGN 127

Query: 124 -----IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                +D +       P                L  L K  GI   H + H A+ D +  
Sbjct: 128 SRWDLLDLVRACYALRPEGINWPLDEEGMPSFRLEKLTKANGIE--HENAHDAMADVYAT 185


>gi|311069646|ref|YP_003974569.1| sporulation inhibitor KapD [Bacillus atrophaeus 1942]
 gi|310870163|gb|ADP33638.1| sporulation inhibitor KapD [Bacillus atrophaeus 1942]
          Length = 205

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 58/180 (32%), Gaps = 15/180 (8%)

Query: 4   KNKMRKIVFDIETT---G-LDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NS 56
            ++   ++ D E T   G    +N    IIE G V+ +D +    TF  ++ P      +
Sbjct: 1   MDQNNLLIIDFEFTMPEGKYSPQNFFPEIIEAGIVKSVDDA-VVETFSSYIKPKKFPKLT 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
                   IT + + +   F     +  +   +++   +      D+  +       +  
Sbjct: 60  KRCKSFLKITQKDVDEGMKFEEFIRKLNELDPQKDCTIVTW-GNMDMKVLKQNCMFNHIP 118

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSL---CKRYGITISHRSKHGALLDSHLLSDVYIK 173
                 + D     +         L  L    + YG      + H AL D+     ++ +
Sbjct: 119 FPFKGEMRDLSLEYKNFF--GDRTLTGLWKAAEEYG-DEGTGTHHKALDDALTTHKLFKR 175


>gi|331009925|gb|EGH89981.1| exonuclease I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 434

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 67/232 (28%), Gaps = 38/232 (16%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--------NGRKNSPEALKLHG 64
           D ETTG++ +NDR +++  +       T+        P        +     P A  + G
Sbjct: 9   DYETTGINPRNDRALQMAGIR------TDTELNEIAPPVNLHCQLSDDILPHPVACMITG 62

Query: 65  ITDEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122
           IT   L +K        +      +        +N  +FD         R   DP     
Sbjct: 63  ITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREW 122

Query: 123 I--------IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDS 164
                    ID +  A    P               L  L    GI   H   H AL D 
Sbjct: 123 QGGNSRWDLIDVVRAAYALRPDGIVWPEQDGRVTLKLERLTAANGID--HGQAHDALSDV 180

Query: 165 HLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                + +  ++   Q          R  ++ ++ V  +  L      F+  
Sbjct: 181 RAT--IALARLIREKQPKLYDYLFALRSKQKVQEQVRLMQPLVHISGRFSAA 230


>gi|315092205|gb|EFT64181.1| conserved domain protein [Propionibacterium acnes HL110PA4]
          Length = 88

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
          ++ D ETT LD    RIIEI  ++    +         + P G     EA  +H I+ + 
Sbjct: 17 VILDTETTDLD---GRIIEISIIDAATGTVL---MNQLINPQGAPIYAEARTVHHISPDD 70

Query: 70 LKDKPSFSSIFSEFWDFF 87
          L   P+F+ ++    D  
Sbjct: 71 LATAPTFTQVWPRLEDVV 88


>gi|295401361|ref|ZP_06811332.1| Exonuclease RNase T and DNA polymerase III [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109679|ref|YP_003987995.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y4.1MC1]
 gi|294976576|gb|EFG52183.1| Exonuclease RNase T and DNA polymerase III [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311214780|gb|ADP73384.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y4.1MC1]
          Length = 207

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 54/174 (31%), Gaps = 17/174 (9%)

Query: 9   KIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
            +  D E T         G   +   IIE+G V +++    ++ F  ++ P         
Sbjct: 7   YLFLDFEFTMPETKMEPKGFFPE---IIEVGLVVVVNDEICDQ-FSSYVKPTRFPVLTNR 62

Query: 60  LK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            K    IT E +    SF  + +    +     +  +      D+  +    +  N    
Sbjct: 63  CKSFLNITQEQINQGMSFHELVALLCKYDRSCPSTVVTW-GSMDMKVLKENCKAANLPFP 121

Query: 119 DPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                 D     +    +  +  L    + YG        H AL D+    +++
Sbjct: 122 FTGEHRDLAMEYKLFFGNKNHTGLRKAIQEYGNE-GVGKAHCALDDAFTTYNIF 174


>gi|304397387|ref|ZP_07379265.1| Exodeoxyribonuclease I [Pantoea sp. aB]
 gi|304355005|gb|EFM19374.1| Exodeoxyribonuclease I [Pantoea sp. aB]
          Length = 475

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 52/179 (29%), Gaps = 27/179 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITD--E 68
           D ET G     DR  +   +    +++        +  P       PEA+ + GIT    
Sbjct: 14  DYETFGTSPSRDRPAQFAGLRTDSEFNPVGEPDVFYCRPPDDYLPQPEAVMITGITPQIA 73

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI---- 123
             +     +         F  +    + +N  +FD         R   DP   +      
Sbjct: 74  MSRGMI-EAEFAERIHTLFTTEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGWAWQNGNS 132

Query: 124 ----IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
               +D +       P                L  L K  G+  +H + H A+ D +  
Sbjct: 133 RWDLLDVMRACYALRPDGIIWPENEEGFPSFRLEHLTKANGV--AHENAHDAMSDVYAT 189


>gi|311741087|ref|ZP_07714912.1| DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303889|gb|EFQ79967.1| DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 432

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +   ++TTG+     RI+ I A+   D  +  + F   L P+          LHG++  
Sbjct: 55  YVALTLQTTGIHPSTGRIVTIDAIAFNDAGEQGQLFHAVLKPD---IDAGPRHLHGLSTT 111

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
            ++  P+F  I        + +    I H+  +  GF+
Sbjct: 112 DIEQAPAFGKILKSLDRLIDGR--TLIVHDLPYTWGFL 147


>gi|167464941|ref|ZP_02330030.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
          subsp. larvae BRL-230010]
          Length = 89

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 7  MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
          MR+I  VFD+ETTGLD   D+I EI A+      +  R        +G K +PE + L G
Sbjct: 1  MREIYTVFDLETTGLDPTKDQITEITAIRTDLIREYGRLDVRITKNSGTKLTPEIINLTG 60

Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI 95
          I +  ++              F +   +  +
Sbjct: 61 INESMMRGGIPEELAIPLLACFMS--GSIVV 89


>gi|229020145|ref|ZP_04176921.1| Sporulation inhibitor KapD [Bacillus cereus AH1273]
 gi|229026373|ref|ZP_04182730.1| Sporulation inhibitor KapD [Bacillus cereus AH1272]
 gi|228734836|gb|EEL85474.1| Sporulation inhibitor KapD [Bacillus cereus AH1272]
 gi|228741154|gb|EEL91376.1| Sporulation inhibitor KapD [Bacillus cereus AH1273]
          Length = 207

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 62/189 (32%), Gaps = 20/189 (10%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            ++ + +  D E T         G   +   IIE+G V ++   K   T+   + P    
Sbjct: 1   MDEQQFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYAAHVRPKTFP 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +    K  GI  E +    SF  +  +  ++        +      D+  +    +  
Sbjct: 57  SLTDRCKKFLGIKQEVVDKGISFHELVEKLAEYEKRCKPTIVTW-GNMDMKVLKHNCEMA 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +     +  D     ++     RN   L    + YG        H AL D+    +++
Sbjct: 116 GLEFPFFGQCRDLSLEYKKFF-GERNQTGLWKAIEAYG-KAGTGKHHCALDDAMTTYNIF 173

Query: 172 IKMMVGGSQ 180
            K++    +
Sbjct: 174 -KLVEKDKE 181


>gi|331004853|ref|ZP_08328270.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC1989]
 gi|330421307|gb|EGG95556.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC1989]
          Length = 476

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 65/194 (33%), Gaps = 27/194 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G     D+  +   +    D +       ++  P+      PEA  L GIT +  
Sbjct: 8   DYETWGASPSQDKPSQFAGIRTDEDLNIVGEPLVIYCQPSSDCLPQPEACLLTGITPQKA 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           LK+  S    F +      ++    + +N+ +FD       L R   DP +         
Sbjct: 68  LKEGLSEPIFFEKIHQQLAQEKTCGVGYNSIRFDDEMTRYGLYRNFYDPYEREWQNGNSR 127

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              ID + +     P +              L  L K  G+   H + H AL D +    
Sbjct: 128 WDIIDMVRLCYALRPETLCWPTNDSGVVSFKLELLSKANGLL--HDAAHDALSDVYAT-- 183

Query: 170 VYIKMMVGGSQINF 183
           + +  ++   Q   
Sbjct: 184 IALAKLIKQKQPEL 197


>gi|298488609|ref|ZP_07006639.1| Exodeoxyribonuclease I [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298156950|gb|EFH98040.1| Exodeoxyribonuclease I [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 437

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 67/232 (28%), Gaps = 38/232 (16%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--------NGRKNSPEALKLHG 64
           D ETTG++ +NDR +++  +       T+        P        +     P A  + G
Sbjct: 9   DYETTGINPRNDRALQMAGIR------TDTELNEIAPPVNLHCQLSDDILPHPVACMITG 62

Query: 65  ITDEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122
           IT   L +K        +      +        +N  +FD         R   DP     
Sbjct: 63  ITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREW 122

Query: 123 I--------IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDS 164
                    ID +  A    P               L  L    GI   H   H AL D 
Sbjct: 123 QGGNSRWDLIDVVRAAYALRPDGIVWPEQDGRVTLKLERLTAANGID--HGQAHDALSDV 180

Query: 165 HLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                + +  ++   Q          R  ++ ++ V  +  L      F+  
Sbjct: 181 RAT--IALARLIREKQPKLYDYLFALRSKQKVQEQVRLMQPLVHISGRFSAA 230


>gi|224826521|ref|ZP_03699622.1| Exodeoxyribonuclease I [Lutiella nitroferrum 2002]
 gi|224601122|gb|EEG07304.1| Exodeoxyribonuclease I [Lutiella nitroferrum 2002]
          Length = 475

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 69/224 (30%), Gaps = 31/224 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFL 70
           D ET G   + DR  +   +    + ++      ++  P      SPEA  L GIT +  
Sbjct: 10  DYETFGTVPRQDRPAQFAGIRTDAELNEIGEPVMLYCRPSPDYLPSPEACLLTGITPQLC 69

Query: 71  K-DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           +    +                   + +N+ +FD       F    +    ++  +    
Sbjct: 70  QQHGVAEHEFAGVIERELATPGTIGVGYNSLRFDDEVTRFLFWRNLIDPYAREWQNQCGR 129

Query: 124 IDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            D L + R  +                    L  L    G  ++H + H AL D      
Sbjct: 130 WDLLDLVRATYALRPEGIEWPKHDTGLPSFKLEHLSAANG--LAHEAAHDALSDVRAT-- 185

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
           + +  ++   Q     K  E      +K  V +   L   +PL 
Sbjct: 186 IALARLIRQRQP----KLFEFYLGLRKKDAVRHQLSLHAPRPLL 225


>gi|212532925|ref|XP_002146619.1| exonuclease, putative [Penicillium marneffei ATCC 18224]
 gi|210071983|gb|EEA26072.1| exonuclease, putative [Penicillium marneffei ATCC 18224]
          Length = 309

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 63/167 (37%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G+    D+   +  V +++++  ++ +  ++ P  +        + GI  
Sbjct: 111 KYVAMDCEMVGVGPDPDKESALARVSIVNWNG-DQVYDSYVRPKEKVTDWR-THVSGIAP 168

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +  SF  +  +       +N   + H+ + D+  +   L    +D  D S+     
Sbjct: 169 KHMIEARSFEEVQKDVAQIL--ENTILVGHSIRNDLEAL--MLSHPKRDIRDTSKY---- 220

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I     H ++ D+     ++ +
Sbjct: 221 PPYRKIAGGGSPRLKLLASEFLGLKI-QDGAHSSVEDARATMFLFRR 266


>gi|66047247|ref|YP_237088.1| exonuclease I [Pseudomonas syringae pv. syringae B728a]
 gi|63257954|gb|AAY39050.1| Exodeoxyribonuclease I [Pseudomonas syringae pv. syringae B728a]
          Length = 476

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 68/226 (30%), Gaps = 26/226 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ +NDR +++  +    + ++      +    +      P A  + GIT   L
Sbjct: 9   DYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPAACMITGITPATL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +K        +      +        +N  +FD         R   DP           
Sbjct: 69  AEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    GI   H   H AL D      +
Sbjct: 129 WDLIDVVRAAYALRPDGIVWPEQDGRVTLKLERLTAANGID--HGQAHDALSDVRAT--I 184

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            +  ++   Q          R  ++ ++ V  +  L      F+  
Sbjct: 185 ALARLIREKQPKLYDYLFALRSKQKVQEQVRLMQPLVHISGRFSAA 230


>gi|242239767|ref|YP_002987948.1| exonuclease RNase T and DNA polymerase III [Dickeya dadantii
           Ech703]
 gi|242131824|gb|ACS86126.1| Exonuclease RNase T and DNA polymerase III [Dickeya dadantii
           Ech703]
          Length = 181

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 19/182 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D+ET+G       ++ IGA  +   S+  ++  + L P+G K+ PEA+ + G+   
Sbjct: 6   YVSVDVETSGPVPGIYSLLSIGACVV---SEPTQSIYLELQPDGLKHDPEAVAVTGLDLT 62

Query: 69  FLKDKPSFSSIFS-EFWDFF-----NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            L+ +     +   +   +       EQ   ++  NA FD  FIN    + +        
Sbjct: 63  KLESEGLPPQVAMLKLEQWLTQVCPAEQKVIFVGLNAPFDWSFINYYFHKYSGMNPFGFT 122

Query: 123 IIDTLSIAR----RKHPSSRNDLNSLCKRYG-ITISHRSKHGALLDSHLLSDVYIKMMVG 177
            ID  +            +++    +  R+  I++     H AL D+    +++  M+  
Sbjct: 123 AIDMKAYYMGLTGCLWKETKSS--QMTARFNPISVP---SHNALDDARFQGELFALMLAE 177

Query: 178 GS 179
             
Sbjct: 178 AR 179


>gi|330973293|gb|EGH73359.1| exonuclease [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 180

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 10/172 (5%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E T    G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINKD-PLDP 120
            I    +      ++++ +F  + +   A  +   +   +D   +  E +  + D  L  
Sbjct: 64  HINQSSIDSAAPLTTVWPQFERWLSHHRARIVGWASWGDYDRQQLEEEWRHHHLDSALSS 123

Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              ++     A+ +H      LNS  +  G+  S +  H AL+D+   + + 
Sbjct: 124 MPHVNLKQRFAQARHLQKPIGLNSALQLAGMQFSGQQ-HRALVDARNTARLL 174


>gi|302188463|ref|ZP_07265136.1| exonuclease I [Pseudomonas syringae pv. syringae 642]
          Length = 476

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 68/226 (30%), Gaps = 26/226 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ +NDR +++  +    D ++      +    +      P A  + GIT   L
Sbjct: 9   DYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMITGITPATL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +K        +      +        +N  +FD         R   DP           
Sbjct: 69  AEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    GI   H   H AL D      +
Sbjct: 129 WDLIDVVRAAYALRPDGIVWPEQDGRVTLKLERLTAANGID--HGQAHDALSDVRAT--I 184

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            +  ++   Q          R  ++ ++ V  +  L      F+  
Sbjct: 185 ALARLIREKQPKLYDYLFALRSKQKVQEQVRLMQPLVHISGRFSAA 230


>gi|66045076|ref|YP_234917.1| exonuclease [Pseudomonas syringae pv. syringae B728a]
 gi|63255783|gb|AAY36879.1| Exonuclease [Pseudomonas syringae pv. syringae B728a]
          Length = 181

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 10/172 (5%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E T    G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 5   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCRELT 64

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINKD-PLDP 120
            I    +      ++++ +F  + +   A  +   +   +D   +  E +  + D  L  
Sbjct: 65  HINQSSIDSAAPLTTVWPQFERWLSHHRARIVGWASWGDYDRQQLEEEWRHHHLDSALSS 124

Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              ++     A+ +H      LNS  +  G+  S +  H AL+D+   + + 
Sbjct: 125 MPHVNLKQRFAQARHLQKPIGLNSALQLAGMQFSGQQ-HRALVDARNTARLL 175


>gi|229529683|ref|ZP_04419073.1| exodeoxyribonuclease I [Vibrio cholerae 12129(1)]
 gi|229333457|gb|EEN98943.1| exodeoxyribonuclease I [Vibrio cholerae 12129(1)]
          Length = 478

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPE 58
           M ++++     FD ET G++   DR  +   V   +D++       ++   PN    +PE
Sbjct: 5   MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE 64

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +       +     +      +  N   + +N+ +FD         R   D
Sbjct: 65  AALITGITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFID 124

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  +    GI   H + 
Sbjct: 125 PYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHISVANGIE--HSNA 182

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 183 HDAMADVIATIELAKKVKAAQPKL 206


>gi|146087811|ref|XP_001465911.1| phosphotransferase [Leishmania infantum JPCM5]
 gi|134070012|emb|CAM68342.1| putative phosphotransferase [Leishmania infantum JPCM5]
          Length = 570

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 30/228 (13%)

Query: 9   KIVFDIETTG---LDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKN-SPEALKLH 63
            +V D E T        +  +IE   + +   + T    FQ ++ P      S    +L 
Sbjct: 58  YVVLDFEATCEADRRIADAEVIEFPMILVDARTATPVAEFQRYVRPVKNPVLSRFCTELT 117

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQN--------AEWIAHNAKFDVG-FINAELQRIN 114
           GIT + +  +  F  ++ E   F  E          +  +     +D+   + A+++   
Sbjct: 118 GITQDMVSGRDPFPVVYCEALQFLAEAGLGDAPPMRSYCVVTCGDWDLKTMLPAQMRVSG 177

Query: 115 --KDPLDPSRIIDTLSIARRKH------------PSSRNDLNSLCKRYGITISHRSKHGA 160
               PL   R  +      +              P   + +  + +  G+ +  R  H  
Sbjct: 178 QQGTPLSFQRWCNLKKCMSQLGFGNGSGCGGAAPPLRPSGMPDMLQMLGLPLQGR-HHSG 236

Query: 161 LLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFF-KEEKKTVPNISLLK 207
           + D   L+ V   ++  G  I+  F T   R +    +  +P +  L 
Sbjct: 237 IDDCRNLTAVLCALLRRGLVIDVTFSTAPFRRWHAPTEAQLPALDALP 284


>gi|319944538|ref|ZP_08018809.1| exodeoxyribonuclease I [Lautropia mirabilis ATCC 51599]
 gi|319742251|gb|EFV94667.1| exodeoxyribonuclease I [Lautropia mirabilis ATCC 51599]
          Length = 489

 Score = 66.4 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 50/178 (28%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITD-EF 69
           D ET G D + DR  +   +   LD ++      ++  P       PEA  L GI   E 
Sbjct: 10  DYETFGRDPRLDRPAQFAGIRTDLDLNEVGEPVMLYCKPAPDYLPDPEACLLTGILPQEC 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP-----SRI 123
           L                        + +N+ +FD       L R  + P D         
Sbjct: 70  LARGLPEYRFADAVLAELGASGTIGVGYNSIRFDDEVTRHLLWRTLRPPYDREWRNGCSR 129

Query: 124 IDTL--------------SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            D L                 R         L  L    G  ++H   H AL D    
Sbjct: 130 WDLLDVVRATAALRPEGIEWPRHDDGRPSFKLEHLSAANG--LAHAQAHDALSDVRAT 185


>gi|157375752|ref|YP_001474352.1| exonuclease I [Shewanella sediminis HAW-EB3]
 gi|157318126|gb|ABV37224.1| Exodeoxyribonuclease I [Shewanella sediminis HAW-EB3]
          Length = 470

 Score = 66.4 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 29/195 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G +   DR  +   +   +D +        +    N    SPEA+ + GIT +  
Sbjct: 13  DYETFGANPAKDRPSQFAGIRTDMDLNIIGDPVTFYCKVANDYLPSPEAILITGITPQLA 72

Query: 70  -LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSR 122
            LK  P  +   ++  D F++ N     +N+ +FD      GF         ++    + 
Sbjct: 73  NLKGIP-EAEFMAKVHDLFSQPNTCVAGYNSIRFDDEVSRYGFYRNFYDPYAREWQQGNS 131

Query: 123 IIDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             D + + R  +               S    L  L +     +SH   H A+ D +   
Sbjct: 132 RWDIIDLVRACYAFRPDGIEWPVKEDGSPSFKLEHLTQA--NDLSHEKAHDAMSDVYATI 189

Query: 169 DVYIKMMVGGSQINF 183
           D+    ++   Q   
Sbjct: 190 DM--AKLIKQKQPKL 202


>gi|145629537|ref|ZP_01785335.1| exodeoxyribonuclease I [Haemophilus influenzae 22.1-21]
 gi|144978380|gb|EDJ88144.1| exodeoxyribonuclease I [Haemophilus influenzae 22.1-21]
          Length = 244

 Score = 66.4 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 61/180 (33%), Gaps = 25/180 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE 68
           ++D E+ G++   DR  +   +    D++        +          PEA+ + GIT +
Sbjct: 9   IYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGITPQ 68

Query: 69  FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--- 123
              +K  S     +     F++ N   + +N  ++D         R   DP + S     
Sbjct: 69  ECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGN 128

Query: 124 -----IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLL 167
                +D +       P   N            L  L K  GI   H + H A+ D +  
Sbjct: 129 SRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIE--HENAHDAMADVYAT 186


>gi|303250424|ref|ZP_07336622.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307252223|ref|ZP_07534120.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|302650750|gb|EFL80908.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306860145|gb|EFM92161.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 514

 Score = 66.4 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 76/222 (34%), Gaps = 28/222 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEA 59
           + KN +    +D E+ G+    DR  +   +    D++        +         SPEA
Sbjct: 1   MNKN-LTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEA 59

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQR 112
           + + GIT +    +        +     F++ N   + +N  ++D       F       
Sbjct: 60  VMVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDP 119

Query: 113 INKDPLDPSRIIDTLSIARRKH---PSS-----------RNDLNSLCKRYGITISHRSKH 158
                 + +   D L + R  +   P                L +L K  GI  +H + H
Sbjct: 120 YEYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGI--AHENAH 177

Query: 159 GALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A+ D +    + +  ++   Q        E+R  KE +K +
Sbjct: 178 DAMADVYAT--IAMAKLIKQKQPKLFQFFFENRGKKEIEKMI 217


>gi|212635816|ref|YP_002312341.1| exonuclease I [Shewanella piezotolerans WP3]
 gi|212557300|gb|ACJ29754.1| Exodeoxyribonuclease I [Shewanella piezotolerans WP3]
          Length = 470

 Score = 66.4 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 66/179 (36%), Gaps = 27/179 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
           D ET G +   DR  +   V   ++ +  +     +    N    SPEA+ + GIT + L
Sbjct: 13  DYETFGANPAKDRPSQFAGVRTDMELNIIDEPVTFYCKLANDYLPSPEAILITGITPQ-L 71

Query: 71  KDKP--SFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSR 122
            ++     +   ++    F+++N   + +N+ +FD      GF         ++  + + 
Sbjct: 72  ANQKGTPEAEFMAKVHQQFSQENTCVVGYNSIRFDDEVSRYGFYRNFFDPYAREWQNGNS 131

Query: 123 IIDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             D + + R  +               S    L  L    G  +SH   H A+ D +  
Sbjct: 132 RWDIIDLVRACYAFRPDGINWPQKEDGSPSFKLEQLTVANG--LSHEKAHDAMSDVYAT 188


>gi|255505894|ref|ZP_05348724.3| exonuclease family protein [Bryantella formatexigens DSM 14469]
 gi|255265267|gb|EET58472.1| exonuclease family protein [Bryantella formatexigens DSM 14469]
          Length = 318

 Score = 66.4 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 60/183 (32%), Gaps = 28/183 (15%)

Query: 7   MRKIVFDIETTGLDSKND-----------RIIEIGAVELLDYSKTNRTFQVFLCPNGR-K 54
           M  IVFD+E    +   D            I+EIGA++L         F  ++ P    +
Sbjct: 6   MNYIVFDLE---WNQCPDGKEHEMRELPFEILEIGAIKLNSEKIETDRFHEYIRPTVYTR 62

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF---DVGFINAELQ 111
              +  ++  I  E L++   F ++   F ++         AH   +   D+  +   ++
Sbjct: 63  MHNKTQEIVHIRQEVLENADFFPAVLERFREWCGPD-----AHYCTWGSLDLLELQRNIR 117

Query: 112 RINKDPLDPS--RIIDTLSIARRKHPSS--RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                   P   +  D   I          R  L        I   +   H AL D+   
Sbjct: 118 YHKLTGFFPFPLKFYDIQKIFSLAFEDGKSRRTLEHAVDMLNIE-KNVPFHEALSDAWYT 176

Query: 168 SDV 170
           + V
Sbjct: 177 AAV 179


>gi|166032316|ref|ZP_02235145.1| hypothetical protein DORFOR_02019 [Dorea formicigenerans ATCC
           27755]
 gi|166028039|gb|EDR46796.1| hypothetical protein DORFOR_02019 [Dorea formicigenerans ATCC
           27755]
          Length = 218

 Score = 66.4 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 17/185 (9%)

Query: 7   MRKIVFDIETTGLDSKN--------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  +V D+E   +            +  I+IGAV L +  K   T   F+ P        
Sbjct: 1   MNYLVIDLEMCKVPRDYRSKRYKYANETIQIGAVLLDEEFKRIGTLSQFVHPEHGVIDYF 60

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115
              L GI +  +K  P          ++  ++  +  A +   D   I  E++  N    
Sbjct: 61  IENLTGIKNGQVKHTPRLQKALLHMLNWIGDREYKVYAWSGS-DRAQILHEIKAKNIVDE 119

Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                ++ SR +D   I  +++  SR   L     R  I    R  H  L D+     + 
Sbjct: 120 KIASFMEESRWVDYQDIFMKRYEMSRKMSLEEALGRADIDPEGR-FHDGLNDAVNTGLLI 178

Query: 172 IKMMV 176
            K+ +
Sbjct: 179 EKLEL 183


>gi|254362095|ref|ZP_04978217.1| exodeoxyribonuclease I [Mannheimia haemolytica PHL213]
 gi|153093654|gb|EDN74613.1| exodeoxyribonuclease I [Mannheimia haemolytica PHL213]
          Length = 515

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 65/202 (32%), Gaps = 27/202 (13%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKL 62
           +K     +D E+ G+    DR  +   +    D++        F         SPEA+ +
Sbjct: 3   DKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVMFFCKQTPDYLPSPEAVMV 62

Query: 63  HGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINK 115
            GIT +    +  S     +     F+  N   I +N  ++D       F          
Sbjct: 63  TGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIRYDDEMTRYTFFRNFYDPYEY 122

Query: 116 DPLDPSRIIDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGAL 161
              + +   D L + R  +                    L +L K  GI  +H + H A+
Sbjct: 123 SWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSFKLENLTKANGI--AHENAHDAM 180

Query: 162 LDSHLLSDVYIKMMVGGSQINF 183
            D +    + +  ++   Q   
Sbjct: 181 SDVYAT--IAMAKLIKQKQPKL 200


>gi|167855672|ref|ZP_02478429.1| exodeoxyribonuclease I [Haemophilus parasuis 29755]
 gi|167853190|gb|EDS24447.1| exodeoxyribonuclease I [Haemophilus parasuis 29755]
          Length = 516

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 27/196 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDE 68
           ++D E+ G+D   DR  +   +    D++        +         SPEA+ + GIT +
Sbjct: 8   IYDYESFGVDPATDRPAQFAGIRTDSDFNIIGEPVMFYCQQTEDYLPSPEAVMVTGITPQ 67

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPS 121
              +         +     F++ N   + +N  ++D       F             + +
Sbjct: 68  LCNQQGLPEPEFAARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGN 127

Query: 122 RIIDTL--------------SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              D L                A          L +L K  GI  +H + H A+ D +  
Sbjct: 128 SRWDLLDVVRACYALRPEGIEWAYDDEGMPSFKLENLTKANGI--AHDNAHDAMADVYAT 185

Query: 168 SDVYIKMMVGGSQINF 183
             + +  ++   Q   
Sbjct: 186 --IAMAKLIKQKQPKL 199


>gi|314983265|gb|EFT27357.1| conserved domain protein [Propionibacterium acnes HL110PA3]
          Length = 87

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
          ++ D ETT LD    RIIEI  ++    +         + P G     EA  +H I+ + 
Sbjct: 17 VILDTETTDLD---GRIIEISIIDAATGTVL---MNQLINPQGAPIYAEARTVHHISPDD 70

Query: 70 LKDKPSFSSIFSEFWD 85
          L   P+F+ ++    D
Sbjct: 71 LATAPTFTQVWPRLED 86


>gi|261492018|ref|ZP_05988593.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261312301|gb|EEY13429.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 515

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 65/202 (32%), Gaps = 27/202 (13%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKL 62
           +K     +D E+ G+    DR  +   +    D++        F         SPEA+ +
Sbjct: 3   DKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVMFFCKQTPDYLPSPEAVMV 62

Query: 63  HGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINK 115
            GIT +    +  S     +     F+  N   I +N  ++D       F          
Sbjct: 63  TGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIRYDDEMTRYTFFRNFYDPYEY 122

Query: 116 DPLDPSRIIDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGAL 161
              + +   D L + R  +                    L +L K  GI  +H + H A+
Sbjct: 123 SWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSFKLENLTKANGI--AHENAHDAM 180

Query: 162 LDSHLLSDVYIKMMVGGSQINF 183
            D +    + +  ++   Q   
Sbjct: 181 SDVYAT--IAMAKLIKQKQPKL 200


>gi|261494569|ref|ZP_05991051.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309760|gb|EEY10981.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 515

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 65/202 (32%), Gaps = 27/202 (13%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKL 62
           +K     +D E+ G+    DR  +   +    D++        F         SPEA+ +
Sbjct: 3   DKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVMFFCKQTPDYLPSPEAVMV 62

Query: 63  HGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINK 115
            GIT +    +  S     +     F+  N   I +N  ++D       F          
Sbjct: 63  TGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIRYDDEMTRYTFFRNFYDPYEY 122

Query: 116 DPLDPSRIIDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGAL 161
              + +   D L + R  +                    L +L K  GI  +H + H A+
Sbjct: 123 SWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSFKLENLTKANGI--AHENAHDAM 180

Query: 162 LDSHLLSDVYIKMMVGGSQINF 183
            D +    + +  ++   Q   
Sbjct: 181 SDVYAT--IAMAKLIKQKQPKL 200


>gi|154286274|ref|XP_001543932.1| hypothetical protein HCAG_00978 [Ajellomyces capsulatus NAm1]
 gi|150407573|gb|EDN03114.1| hypothetical protein HCAG_00978 [Ajellomyces capsulatus NAm1]
          Length = 301

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D E  G+    DR   +  V +++Y+   + +  F+ P  +        + G++ 
Sbjct: 102 RYVALDCEMVGVGPNPDRDSALARVSIVNYNG-EQVYDSFVLPKEKVTDWR-THVSGVSP 159

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + D   F  +  +     +      + H  + D+  +      +   P    R     
Sbjct: 160 KHMTDAREFEVVQRDVAGILD--GCILVGHAVRNDLDAL------LLSHPKHDIRDTSKH 211

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I   + H ++ D+     ++ +
Sbjct: 212 PPYRKIAGGGSPRLKILASELLGLEI-QGAAHSSIEDAQATMLLFRR 257


>gi|52081642|ref|YP_080433.1| sporulation inhibitor KapD [Bacillus licheniformis ATCC 14580]
 gi|52787025|ref|YP_092854.1| sporulation inhibitor KapD [Bacillus licheniformis ATCC 14580]
 gi|52004853|gb|AAU24795.1| KapD [Bacillus licheniformis ATCC 14580]
 gi|52349527|gb|AAU42161.1| KapD [Bacillus licheniformis ATCC 14580]
          Length = 205

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 65/171 (38%), Gaps = 13/171 (7%)

Query: 10  IVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKL 62
           ++ D E T  + K         IIE G V+ + + +   TF  ++ P      +      
Sbjct: 7   LIIDFEFTMPEGKYHPQNFFPEIIEAGIVKTV-HDEVVETFSSYIKPKKFPKLTRRCKNF 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             IT E +    +F+++  +  +   ++N+  I      D+  +       N  P     
Sbjct: 66  LSITQEQVDQGITFNALIEKLRELDPDRNSVIITW-GNMDMKVLKQNCM-FNHVPFPFKG 123

Query: 123 IIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +  LS+  ++    +   +L    + YG + + +  H AL D+     ++
Sbjct: 124 EMRDLSMEYKEFFGDKTLTNLWKAAEEYGDSGTGKQ-HKALDDAMTTYKLF 173


>gi|60594178|pdb|1Y97|A Chain A, The Human Trex2 3' Exonuclease Structure Suggests A
           Mechanism For Efficient Non-Processive Dna Catalysis
 gi|60594179|pdb|1Y97|B Chain B, The Human Trex2 3' Exonuclease Structure Suggests A
           Mechanism For Efficient Non-Processive Dna Catalysis
          Length = 238

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 35/226 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIE---IGAVELLDYSKTNRTFQVFLCP-----------NGRK 54
            +  D+E TGL S    I E            +  +      + P             R 
Sbjct: 12  FVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCXCPERP 71

Query: 55  NSPEALKLHGITDEFL---KDKPSFSSIFSEFWDFFNEQNAE--WIAHN-AKFDVGFINA 108
            + +A ++ G++ E L   +      ++      F + Q      +AHN   +D   + A
Sbjct: 72  FTAKASEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCA 131

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKH 158
           EL+R+       +  +DTL   R    +  +           L SL  RY       + H
Sbjct: 132 ELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRY-FRAEPSAAH 190

Query: 159 GALLDSHLLSDVYIK----MMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A  D H L  +++     ++    +   G+   E  +   +  ++
Sbjct: 191 SAEGDVHTLLLIFLHRAAELLAWADEQARGWAHIEPXYLPPDDPSL 236


>gi|262171739|ref|ZP_06039417.1| exodeoxyribonuclease I [Vibrio mimicus MB-451]
 gi|261892815|gb|EEY38801.1| exodeoxyribonuclease I [Vibrio mimicus MB-451]
          Length = 474

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPE 58
           M ++++     FD ET G++   DR  +   V   +D++       ++   PN    +P+
Sbjct: 1   MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPD 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +       S     +      +  N   + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKANSLGLSEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQHGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIELAKKIKAAQPKL 202


>gi|195999854|ref|XP_002109795.1| hypothetical protein TRIADDRAFT_20827 [Trichoplax adhaerens]
 gi|190587919|gb|EDV27961.1| hypothetical protein TRIADDRAFT_20827 [Trichoplax adhaerens]
          Length = 229

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 30/198 (15%)

Query: 10  IVFDIETTG----LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
           I+ D E T         +  IIE    +  +   +    F  ++ P      S     L 
Sbjct: 7   IIIDFEATCWKDNSSRYSSEIIEFPAVLLNVLTQQIEAVFHQYVQPTINPKLSEFCKTLT 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE-----------QNAEWIAHNAKFDVGFINAELQR 112
           GIT + + D    ++    F  + +E           +N     H   ++  F+      
Sbjct: 67  GITQKQVDDGIPLATCLVSFRKWLDEIIKNKNIRLFNKNCRDAGHKNYYNCIFVTWSDWD 126

Query: 113 IN------------KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
           I             K P +  + ID  ++ +R +      LN   +  G+    R  H  
Sbjct: 127 IGVCLYYECKKKQIKLPTEFYQWIDLRALYKRFYGKKPTGLNGSMESVGLKFIGRE-HSG 185

Query: 161 LLDSHLLSDVYIKMMVGG 178
           L DS   + +  KM+  G
Sbjct: 186 LDDSKNTARLCSKMVHDG 203


>gi|297621033|ref|YP_003709170.1| hypothetical protein wcw_0797 [Waddlia chondrophila WSU 86-1044]
 gi|297376334|gb|ADI38164.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
          Length = 195

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 23/191 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRK---NSPEALKL 62
           M  I  DIETTGLD    + I++   +  +    +   +Q  +  +      + PE++K+
Sbjct: 1   MYAIFLDIETTGLDPFIHKPIDLAFKIYDIRQDVSIAEYQQKIFQSIEDWNLHDPESIKV 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINKDP 117
           +G T   L++      +  E              A +I  N  FD  F +  +    ++ 
Sbjct: 61  NGYTYRDLEEGKRSEKVAEEVIQLLLSHGIERGKAFFICQNPAFDRAFFDRIIPVYTQEK 120

Query: 118 LDPSRIIDTLSIARRKH-----PSSRNDL--------NSLCKRYGITISHRSKHGALLDS 164
           L+       L+            + R+ L        N++ KR+GI       H A+   
Sbjct: 121 LNWPYHWLDLASMYWVFLLNEEKNERSQLSETINLSKNAIGKRFGIEQEA-VPHRAMNGV 179

Query: 165 HLLSDVYIKMM 175
             L   Y  ++
Sbjct: 180 EHLIKCYRAVI 190


>gi|89900857|ref|YP_523328.1| exonuclease I [Rhodoferax ferrireducens T118]
 gi|89345594|gb|ABD69797.1| Exodeoxyribonuclease I subunit C [Rhodoferax ferrireducens T118]
          Length = 485

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEF- 69
           D ET G +++ DR  +  A+    + +       ++  P G     P+A  + GIT +  
Sbjct: 14  DYETFGTNTRRDRPAQFAAIRTDAELNVIGAPLMLYCQPAGDFLPDPQACLITGITPQLC 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L+         ++    F+      + +N  +FD         R   DP           
Sbjct: 74  LEKGIPEYQFAAQIEQAFSLPGTVGVGYNTIRFDDEITRFMFWRNLIDPYAREWQNDCGR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +  A    P                L  L    G+   H + H AL D    
Sbjct: 134 WDLLDVVRTAYALRPDGMEWPLNAEGKPSFKLTDLSAANGLL--HEAAHDALSDVRAT 189


>gi|71737440|ref|YP_276156.1| exonuclease I [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557993|gb|AAZ37204.1| exodeoxyribonuclease I [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 476

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 67/232 (28%), Gaps = 38/232 (16%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--------NGRKNSPEALKLHG 64
           D ETTG++ +NDR +++  +       T+        P        +     P A  + G
Sbjct: 9   DYETTGINPRNDRALQMAGIR------TDTELNEIAPPVNLHCQLSDDILPHPVACMITG 62

Query: 65  ITDEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122
           IT   L +K        +      +        +N  +FD         R   DP     
Sbjct: 63  ITPATLSEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREW 122

Query: 123 I--------IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDS 164
                    ID +  A    P               L  L    GI   H   H AL D 
Sbjct: 123 QGGNSRWDLIDVVRAAYALRPDGIVWPEQDGRVTLKLERLTAANGID--HGQAHDALSDV 180

Query: 165 HLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                + +  ++   Q          R  ++ ++ V  +  L      F+  
Sbjct: 181 RAT--IALARLIREKQPKLYDYLFALRSKQKVQEQVRLMQPLVHISGRFSAA 230


>gi|255324350|ref|ZP_05365469.1| DNA polymerase III subunit epsilon [Corynebacterium
           tuberculostearicum SK141]
 gi|255298569|gb|EET77867.1| DNA polymerase III subunit epsilon [Corynebacterium
           tuberculostearicum SK141]
          Length = 432

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +   ++TTG+     RI+ I A+   D  +  + F   L P+          LHG++  
Sbjct: 55  YVALTLQTTGIHPSTGRIVTIDAIAFNDAGEQGQLFHAVLKPD---IDAGPRHLHGLSTT 111

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
            ++  P+F  I        + +    I H+  +  GF+
Sbjct: 112 DIEQAPAFGKILKSLDKLIDGR--TLIVHDLPYTWGFL 147


>gi|307776322|pdb|2XRI|A Chain A, Crystal Structure Of Human Eri1 Exoribonuclease 3
          Length = 224

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 18/172 (10%)

Query: 9   KIVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKLHG 64
            +V D E T    +     IIE   ++L     +   TF +++ P      +P   +L G
Sbjct: 33  FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 92

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-FINAELQRINKD 116
           I    +  +PS   +     ++  ++        + ++     +D+   +  + Q +   
Sbjct: 93  IIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLKVMLPGQCQYLGLP 151

Query: 117 PLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALLDSH 165
             D  +    L  A         +N L  + K  G+++ H    H  + D  
Sbjct: 152 VADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSGIDDCK 201


>gi|242078527|ref|XP_002444032.1| hypothetical protein SORBIDRAFT_07g006140 [Sorghum bicolor]
 gi|241940382|gb|EES13527.1| hypothetical protein SORBIDRAFT_07g006140 [Sorghum bicolor]
          Length = 283

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 69/214 (32%), Gaps = 18/214 (8%)

Query: 9   KIVFDIETT---GLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRK-NSPEALKL 62
            +V D E T   G       IIE  +V L+D    +T  TF+ ++ P      +     L
Sbjct: 5   FVVIDFEATCQEGSVIYPQEIIEFPSV-LVDGATGRTLSTFRTYVRPRHHPRLTDFCRDL 63

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDP 120
            GIT   +    + +        +     A+   +A     D        +      ++ 
Sbjct: 64  TGITQGDVDAGVTLAEALDMHDRWLEAHGAKLGKLAVVTWGDWDCRTMLDRECRFKGIEK 123

Query: 121 SRIIDTLSIARRKHPSS------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               D     R    ++      R  L    ++ G+    R  H  L D+   + + +++
Sbjct: 124 PHYFDDWINLRLPFSAAFGVGNVRFTLQDAIRKAGLQWEGR-LHCGLDDALNTAHLLVEL 182

Query: 175 MVGGSQINF--GFKTNEDRFFKEEKKTVPNISLL 206
           M  G+ +      +        E K  +P +   
Sbjct: 183 MRRGTLLKITGSLEPKRSPPRPEPKAALPCVGPR 216


>gi|332288227|ref|YP_004419079.1| exonuclease I [Gallibacterium anatis UMN179]
 gi|330431123|gb|AEC16182.1| exonuclease I [Gallibacterium anatis UMN179]
          Length = 471

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 67/205 (32%), Gaps = 26/205 (12%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALK 61
            N     ++D E+ G+D   DR  +   +    D++       ++          P A+ 
Sbjct: 1   MNDFSFFIYDYESFGVDPARDRPAQFAGIRTDKDFNIIGEPIVLYCKQTNDYLPHPAAVA 60

Query: 62  LHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD 119
           L GIT +   +   S     ++  + F++ N   + +N  +FD         R   DP  
Sbjct: 61  LTGITPQLCNQQGISEPEFAAKILEEFSQPNTCIMGYNNIRFDDEMTRYTFYRNFIDPYA 120

Query: 120 P-----SRIIDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGA 160
                 +   D L + R  +                    L  L K   I   H   H A
Sbjct: 121 YSYSQGNSRWDLLDVIRATYALRPEGINWVYDDEGMPSFRLELLTKANNIE--HSHAHDA 178

Query: 161 LLDSHLLSDVYIKMMVGGSQINFGF 185
           + D +   ++  K++       F +
Sbjct: 179 MSDVYATIEM-AKLIKQQQPKLFDY 202


>gi|242776935|ref|XP_002478931.1| exonuclease, putative [Talaromyces stipitatus ATCC 10500]
 gi|218722550|gb|EED21968.1| exonuclease, putative [Talaromyces stipitatus ATCC 10500]
          Length = 308

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 64/167 (38%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G+    D+   +  V +++++  ++ +  F+ P  +        + GI  
Sbjct: 110 KYVAMDCEMVGVGPDPDKESALARVSIVNWNG-DQVYDSFVRPKEKVTDWR-THVSGIAP 167

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +  SF  +  +       ++   + H+ + D+  +   L    +D  D S+     
Sbjct: 168 KHMLEARSFEEVQKDVAHIL--EDTVLVGHSIRNDLEAL--MLSHPKRDIRDTSKY---- 219

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+    S   L  L  +  G+ I     H ++ D+     ++ +
Sbjct: 220 PPYRKIAGGSSPRLKLLASELLGLKI-QEGAHSSVEDARATMLLFRR 265


>gi|114331862|ref|YP_748084.1| exonuclease I [Nitrosomonas eutropha C91]
 gi|114308876|gb|ABI60119.1| Exodeoxyribonuclease I subunit C [Nitrosomonas eutropha C91]
          Length = 486

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 55/178 (30%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET+G + + DR ++   +   +  ++      ++  P   +   PEA  L GIT +  
Sbjct: 12  DYETSGANPRQDRPVQFAGLRTDEALNEIGDPLVIYCKPARDRLPHPEACLLTGITPQMA 71

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
             +        +       +     + +N  +FD       L R   DP           
Sbjct: 72  ATRGLPEPEFIALIHAQLAQPGTCGVGYNTLRFDDEVTRFALYRNFYDPYAREWQSGNSR 131

Query: 124 IDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            D + +AR                       L  +    G  + H S H AL D    
Sbjct: 132 WDVIDLARMTFALRPEGINWPVNGEGKPSFRLEDITAANG--LMHDSAHDALSDVRAT 187


>gi|71897974|ref|ZP_00680179.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
 gi|71732218|gb|EAO34273.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
          Length = 488

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 75/210 (35%), Gaps = 30/210 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV      +         + P +    SP A  + GIT
Sbjct: 15  FLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGIT 74

Query: 67  DEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR-- 122
            +   ++  + ++ F+       + +   + +N  +FD  FI   L R   DP +     
Sbjct: 75  PQHAQREGINEAAAFAHIAMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYEREWRN 134

Query: 123 ---IIDTLSIARRKH---PSSRN-----------DLNSLCKRYGITISHR--SKHGALLD 163
                D L + R  H   P   +            L  L     +    R  + H AL D
Sbjct: 135 GNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLA----LANHAREGTAHEALSD 190

Query: 164 SHLLSDVYIKMMVGGSQI-NFGFKTNEDRF 192
            +    +  K      ++ N+  +  + RF
Sbjct: 191 VYATISMARKFRAAQPRLWNYALQLRDKRF 220


>gi|299769340|ref|YP_003731366.1| Exonuclease family protein [Acinetobacter sp. DR1]
 gi|298699428|gb|ADI89993.1| Exonuclease family protein [Acinetobacter sp. DR1]
          Length = 228

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 94/230 (40%), Gaps = 34/230 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVF--LCPNGRKNSPEALKL 62
           M+ I+ D ET    + N   IEI    +E+ +   T    ++F  L   G   S  A+ +
Sbjct: 1   MQTIILDTET---HTLNGLPIEIAYAPIEINEGKLTLDKSKLFDQLYQVGAPISYAAMAV 57

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H I +  L+++P     +  F     E     I HN  +D+  I     R   D +   +
Sbjct: 58  HHILESDLENQP----HYKTFK--LPESTTYIIGHNIDYDIAAI----ARCGVD-VSNIK 106

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISH-------RSKHGALLDSHLLSDVYIKM 174
            I TL++AR+  P +  +++++L   Y I+          +  H A  D  L +++ + +
Sbjct: 107 PICTLALARKVWPEAEAHNISALI--YMISQGSSKARELLKGAHRADADIILTANILMHI 164

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDE 223
           +      +   +  E+ +   E+  +P  ++  K        + K+ +  
Sbjct: 165 VY-----HLNIQDIEELYRVSEEARIPTTVNFGKHKGTAIAELPKDYIQW 209


>gi|161502767|ref|YP_001569879.1| exonuclease I [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864114|gb|ABX20737.1| hypothetical protein SARI_00818 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 476

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 57/193 (29%), Gaps = 28/193 (14%)

Query: 1   MIRKN---KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           M  KN   +   +  D ET G     DR  +  A+    D++        +  P      
Sbjct: 1   MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAAIRTDNDFNIVGEPDVFYCKPADDYLP 60

Query: 57  -PEALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI 113
            P A+ + GIT  E  +   + ++        F       + +N  +FD         R 
Sbjct: 61  QPGAVLITGITPQEACEKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRN 120

Query: 114 NKDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISH 154
             DP   S          +D +       P                L  L +     I H
Sbjct: 121 FYDPYAWSWQHENSRWDILDVMRACYALRPEGINWPENDDGLPSFRLEHLTQA--NDIEH 178

Query: 155 RSKHGALLDSHLL 167
            + H A+ D +  
Sbjct: 179 SNAHDAMADVYAT 191


>gi|94500901|ref|ZP_01307427.1| exodeoxyribonuclease I [Oceanobacter sp. RED65]
 gi|94427020|gb|EAT12002.1| exodeoxyribonuclease I [Oceanobacter sp. RED65]
          Length = 478

 Score = 66.0 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 53/178 (29%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G     DR  +   V   LD +        +          P A  + GI+ +  
Sbjct: 11  DFETFGASPIWDRPAQFAGVRTDLDLNIIAEPDMFYCRQADDYLPHPIACMITGISPQTC 70

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           +DK    +       D F +       +N+ +FD       L R   DP           
Sbjct: 71  QDKGLPEAEFIKRIHDLFMQPQTCVAGYNSIRFDDEVTRNTLYRNFFDPYQREWQNGNSR 130

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +  A    P                L +L    GI   H + H AL D +  
Sbjct: 131 WDILDMMRCAYSLRPDGIEWPKGEDGKVSFKLENLSAANGII--HENAHDALSDVYAT 186


>gi|190149982|ref|YP_001968507.1| exodeoxyribonuclease I [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263310|ref|ZP_07544928.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|189915113|gb|ACE61365.1| exodeoxyribonuclease I [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871372|gb|EFN03098.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 514

 Score = 66.0 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 76/224 (33%), Gaps = 32/224 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEA 59
           + KN +    +D E+ G+    DR  +   +    D++        +         SPEA
Sbjct: 1   MNKN-LTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEA 59

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQR 112
           + + GIT +    +        +     F++ N   + +N  ++D       F       
Sbjct: 60  VMVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDP 119

Query: 113 INKDPLDPSRIIDTLSIARRKH---PSS-----------RNDLNSLCKRYGITISHRSKH 158
                 + +   D L + R  +   P                L +L K  GI  +H + H
Sbjct: 120 YEYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGI--AHENAH 177

Query: 159 GALLDSHLLSDVYIKM--MVGGSQINFGFKTNEDRFFKEEKKTV 200
            A+ D +      I M  ++   Q        E+R  KE +K +
Sbjct: 178 DAMADVYAT----IAMVKLIKQKQPKLFQFFFENRGKKEIEKMI 217


>gi|332148536|dbj|BAK20117.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
 gi|332148540|dbj|BAK20119.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
 gi|332148542|dbj|BAK20120.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
 gi|332148544|dbj|BAK20121.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
 gi|332148550|dbj|BAK20124.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
          Length = 238

 Score = 66.0 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + +IDTL +AR  +P    + LN+LCK++ I ++    H A+ D+     + +KM+   +
Sbjct: 7   NPVIDTLELARFLYPEFKNHRLNTLCKKFDIELTQH--HRAVFDAEATGYLLLKMLKDAA 64

Query: 180 Q--INFGFKTNED 190
           +  I +  + NE+
Sbjct: 65  EKDIFYHDQLNEN 77


>gi|195162333|ref|XP_002022010.1| GL14415 [Drosophila persimilis]
 gi|194103908|gb|EDW25951.1| GL14415 [Drosophila persimilis]
          Length = 223

 Score = 66.0 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 69/216 (31%), Gaps = 28/216 (12%)

Query: 10  IVFDIETTGLDSKND------RIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           I  D E T  +++         IIE    +  L        F  ++ P    + S     
Sbjct: 8   ISVDFEATCWENQPAQQFRLSEIIEFPAILVNLKTGMVEAEFHKYVMPVESPQLSEYCTS 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAH-NAKFD 102
           L GI  + ++      +  + F ++  ++                  N  ++   N  F+
Sbjct: 68  LTGIQQKTVEAGVPLQTALNSFIEWLKKELSARNLVLPKMSMTNPQGNCFFVTWTNWDFE 127

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
                   ++  + P   ++ ID  +I ++ +     +         +T   R  H  + 
Sbjct: 128 TCLAKECARKNIRKPTCFNQWIDAKAIYKKWYKYHPFNFGKALAHVRLTFQGR-AHSGID 186

Query: 163 DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
           D+  L ++  KM   G+ ++            E + 
Sbjct: 187 DAKNLGNLICKMFREGAPLSITKDLTPQEELNENRG 222


>gi|319647558|ref|ZP_08001778.1| KapD protein [Bacillus sp. BT1B_CT2]
 gi|317390406|gb|EFV71213.1| KapD protein [Bacillus sp. BT1B_CT2]
          Length = 205

 Score = 66.0 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 65/171 (38%), Gaps = 13/171 (7%)

Query: 10  IVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKL 62
           ++ D E T  + K         IIE G V+ + + +   TF  ++ P      +      
Sbjct: 7   LIIDFEFTMPEGKYHPQNFFPEIIEAGIVKAV-HDEVVETFSSYIKPKKFPKLTRRCKNF 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             IT E +    +F+++  +  +   ++N+  I      D+  +       N  P     
Sbjct: 66  LSITQEQVDQGITFNALIEKLRELDPDRNSVIITW-GNMDMKVLKQNCM-FNHVPFPFKG 123

Query: 123 IIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +  LS+  ++    +   +L    + YG + + +  H AL D+     ++
Sbjct: 124 EMRDLSMEYKEFFGDKTLTNLWKAAEEYGDSGTGKQ-HKALDDAMTTYKLF 173


>gi|62859267|ref|NP_001016146.1| exoribonuclease 1 [Xenopus (Silurana) tropicalis]
 gi|89268181|emb|CAJ81479.1| exonuclease 1 [Xenopus (Silurana) tropicalis]
          Length = 345

 Score = 66.0 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 70/190 (36%), Gaps = 20/190 (10%)

Query: 9   KIVFDIETT---GLDSK-NDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKL 62
             V D E T   G  +     IIE   V L  +  +    FQ ++ P      S   + L
Sbjct: 126 ICVIDFEATCEEGNSTDYTHEIIEFPIVLLNTHTLEIEDVFQRYVRPEINPQLSEFCVNL 185

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG-FINAELQ--R 112
            GIT + +     F  +     D+  E       + A     +  +D+  F+N + +  R
Sbjct: 186 TGITQDIVDKSDIFPDVLRSVVDWMREKELGTKYKYAILT--DGSWDMSKFLNMQCRVSR 243

Query: 113 INKDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +           I        K P ++  L ++ ++ G+T   R  H  + DS  ++ + 
Sbjct: 244 LKYPRFAKKWINICKSYGNFYKVPRTQTKLTTMLEKLGMTYDGR-LHSGVDDSKNIARIA 302

Query: 172 IKMMVGGSQI 181
             M+  G ++
Sbjct: 303 AHMLQDGCEL 312


>gi|109716243|gb|ABG43103.1| 3'-5' exonuclease TREX2 long form [Homo sapiens]
          Length = 278

 Score = 66.0 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 35/226 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIE---IGAVELLDYSKTNRTFQVFLCP-----------NGRK 54
            +  D+E TGL S    I E            +  +      + P             R 
Sbjct: 52  FVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERP 111

Query: 55  NSPEALKLHGITDEFL---KDKPSFSSIFSEFWDFFNEQNAE--WIAHN-AKFDVGFINA 108
            + +A ++ G++ E L   +      ++      F + Q      +AHN   +D   + A
Sbjct: 112 FTAKASEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCA 171

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKH 158
           EL+R+       +  +DTL   R    +  +           L SL  RY       + H
Sbjct: 172 ELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRY-FRAEPSAAH 230

Query: 159 GALLDSHLLSDVYIK----MMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A  D H L  +++     ++    +   G+   E  +   +  ++
Sbjct: 231 SAEGDVHTLLLIFLHRAAELLAWADEQARGWAHIEPMYLPPDDPSL 276


>gi|260914022|ref|ZP_05920495.1| exodeoxyribonuclease I [Pasteurella dagmatis ATCC 43325]
 gi|260631655|gb|EEX49833.1| exodeoxyribonuclease I [Pasteurella dagmatis ATCC 43325]
          Length = 476

 Score = 66.0 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 31/193 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPE 58
           M         ++D E+ G++  +DR  +   +   +D++       ++    N    SPE
Sbjct: 1   MSTTGDFSFFIYDYESFGVNPASDRPAQFAGIRTDIDFNIIGEPVMLYCKQTNDYLPSPE 60

Query: 59  ALKLHGITDEFLKDK----PSFSS-IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           A+ + GIT +   +K    P F+  I  EF             +N ++D         R 
Sbjct: 61  AVLVTGITPQECNEKGISEPEFAERILQEFSQ---PNTCVMGFNNIRYDDEMTRYTFYRN 117

Query: 114 NKDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISH 154
             DP + S          +D +       P                L  L +  GI   H
Sbjct: 118 FIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAHDENGMPSFRLEKLTQVNGIE--H 175

Query: 155 RSKHGALLDSHLL 167
            + H A+ D +  
Sbjct: 176 SNAHDAMADVYAT 188


>gi|145639026|ref|ZP_01794634.1| exodeoxyribonuclease I [Haemophilus influenzae PittII]
 gi|145271998|gb|EDK11907.1| exodeoxyribonuclease I [Haemophilus influenzae PittII]
 gi|309750985|gb|ADO80969.1| Exodeoxyribonuclease I [Haemophilus influenzae R2866]
          Length = 473

 Score = 66.0 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 61/180 (33%), Gaps = 25/180 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE 68
           ++D E+ G++   DR  +   +    D++        +          PEA+ + GIT +
Sbjct: 9   IYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGITPQ 68

Query: 69  FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--- 123
              +K  S     +     F++ N   + +N  ++D         R   DP + S     
Sbjct: 69  ECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGN 128

Query: 124 -----IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLL 167
                +D +       P   N            L  L K  GI   H + H A+ D +  
Sbjct: 129 SRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIE--HENAHDAMADVYAT 186


>gi|306822243|ref|ZP_07455625.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|304554625|gb|EFM42530.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
          Length = 560

 Score = 66.0 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 70/194 (36%), Gaps = 42/194 (21%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYS------------------KTNRTF-----QVFL 48
            DIETTG D     II+IG  E ++                     T   +        +
Sbjct: 333 VDIETTGTDPARTYIIDIGF-EFMNMMSPRPSDAPAEYRYEQSSYVTGDAYGQARLSFGV 391

Query: 49  CPNGRKNSPE-ALKLHGITDEFLKDKPSFSSIFSE----FWDFFNEQNAEWIAHNAKFDV 103
            P       +  L L GI    L   P     +            +Q   ++AHNA+F+ 
Sbjct: 392 TPENAAVGNDLILSLTGIDVRDLAGGPRLFDEWPAAQIGLLQRLEQQ--PYVAHNARFEH 449

Query: 104 GFINAELQRINKDPLDPS-RIIDTLSIARR---------KHPSSRNDLNSLCKRYG-ITI 152
           GF    +    +     +  IIDTL ++RR         +HP   N L S  KR G +  
Sbjct: 450 GFFMLNIAGYAESYRAGNITIIDTLPMSRRWDDGSIPDDEHPYGDNTLESYAKRQGALDS 509

Query: 153 SHRSKHGALLDSHL 166
           S   +H  L D+H+
Sbjct: 510 SKSERHLGLEDAHI 523


>gi|297698260|ref|XP_002826232.1| PREDICTED: ERI1 exoribonuclease 2-like isoform 1 [Pongo abelii]
          Length = 689

 Score = 65.6 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 34/208 (16%)

Query: 3   RKNKMRK---IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK 54
           RK+K      IV D E+T    G    +  IIE    +      +    FQ ++ P    
Sbjct: 28  RKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIESEFQAYVQPQEHP 87

Query: 55  N-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNA 92
             S   ++L GI    + +        S+F  + ++                     +  
Sbjct: 88  ILSEFCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSTSEVKLC 147

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRII--DTLSIARRKHPSSRNDLNSLCKRYGI 150
            ++   + +D+G       +  +      + +  D  +  +  +      L+   +  GI
Sbjct: 148 AFVTW-SDWDLGVCLEYECKRKQLFKTSEKSLKDDIXATYKLFYRRKPKGLSGALQEVGI 206

Query: 151 TISHRSKHGALLDSHLLSDVYIKMMVGG 178
             S R  H  L DS   S +  KM+  G
Sbjct: 207 EFSGRE-HSGLDDSRNTSLLAWKMIRDG 233


>gi|228992243|ref|ZP_04152176.1| Exonuclease RNase T and DNA polymerase III [Bacillus pseudomycoides
           DSM 12442]
 gi|228767496|gb|EEM16126.1| Exonuclease RNase T and DNA polymerase III [Bacillus pseudomycoides
           DSM 12442]
          Length = 257

 Score = 65.6 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 60/155 (38%), Gaps = 10/155 (6%)

Query: 25  RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            +++IGA+++     +    F   + P     +    KL GIT + LK+   F  +   F
Sbjct: 2   EVVDIGAIKVEASTVRIIGQFSSLVKPT-APLTRHTTKLTGITKQDLKEVEVFPEVMERF 60

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDPSRIIDTLSIARRKHPS---SR 138
             F  + +  +I    + D  F+  + +  + +   ++  R  D      + +       
Sbjct: 61  LQFAGD-DYMFITWGKE-DYKFLAQDCKLHHIECPNIEDERKFDLQKFVFQAYDQLFIHT 118

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             L    +++ +    +  H A  D+    ++++K
Sbjct: 119 PSLKFAVEQFSLEWEGKQ-HRAFADAKNTLNIFLK 152


>gi|228998298|ref|ZP_04157893.1| Exonuclease RNase T and DNA polymerase III [Bacillus mycoides
           Rock3-17]
 gi|229005781|ref|ZP_04163479.1| Exonuclease RNase T and DNA polymerase III [Bacillus mycoides
           Rock1-4]
 gi|228755457|gb|EEM04804.1| Exonuclease RNase T and DNA polymerase III [Bacillus mycoides
           Rock1-4]
 gi|228761450|gb|EEM10401.1| Exonuclease RNase T and DNA polymerase III [Bacillus mycoides
           Rock3-17]
          Length = 255

 Score = 65.6 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 60/154 (38%), Gaps = 10/154 (6%)

Query: 26  IIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFW 84
           +++IGA+++     +    F   + P     +    KL GIT + LK+   F  +   F 
Sbjct: 1   MVDIGAIKVEASTVRIIGQFSSLVKPT-APLTRHTTKLTGITKQDLKEVEVFPEVMERFL 59

Query: 85  DFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIIDTLSIARRKHPS---SRN 139
            F  + +  +I    + D  F+  + +  + +   ++  R  D      + +        
Sbjct: 60  QFAGD-DYMFITWGKE-DYKFLAQDCKLHHIECPNIENERKFDLQKFVFQAYDQLFIHTP 117

Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            L    +++ +    +  H A  D+    ++++K
Sbjct: 118 SLKFAVEQFSLEWEGKQ-HRAFADAKNTLNIFLK 150


>gi|134093838|ref|YP_001098913.1| exonuclease I [Herminiimonas arsenicoxydans]
 gi|133737741|emb|CAL60786.1| Exodeoxyribonuclease I (Exonuclease I) (DNA
           deoxyribophosphodiesterase) (dRPase) [Herminiimonas
           arsenicoxydans]
          Length = 477

 Score = 65.6 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 66/196 (33%), Gaps = 26/196 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G++++ DR  +  A+    + ++      ++  P N     P++  + GIT +  
Sbjct: 10  DYETFGINTRRDRPAQFAAIRTDAELNEIGAPIMLYCQPANDFLPDPQSCLITGITPQVC 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L+         ++      +     + +N  +FD         R   DP           
Sbjct: 70  LERGIPEYQFAAKIESELAQTGTIGVGYNTIRFDDEVTRFMFWRNLIDPYAREWQNACGR 129

Query: 124 ---IDTLSIARRK---------HPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSD 169
              +D +  A            HP  R+   L  L    GI  +H + H AL D      
Sbjct: 130 WDILDVVRTAYALRPEGINWPQHPDGRSSFRLEQLTAANGI--AHEAAHDALSDVRAT-I 186

Query: 170 VYIKMMVGGSQINFGF 185
              +++       F F
Sbjct: 187 ALARLIRDRQPRLFDF 202


>gi|325497751|gb|EGC95610.1| exonuclease I [Escherichia fergusonii ECD227]
          Length = 475

 Score = 65.6 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQATFLFHDYETFGTHPALDRPAQFAAIRTDSNFNIIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGIIWPENEEGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|325094249|gb|EGC47559.1| RNA exonuclease [Ajellomyces capsulatus H88]
          Length = 324

 Score = 65.6 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D E  G+    DR   +  V +++Y+   + +  F+ P           + G++ 
Sbjct: 125 RYVALDCEMVGVGPNPDRDSALARVSIVNYNG-EQVYDSFVLPKEEVTDWR-THVSGVSP 182

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + D   F  +  +     +      + H  + D+  +      +   P    R     
Sbjct: 183 KHMTDAREFEVVQRDVAGILD--GCILVGHAVRNDLDAL------LLSHPKHDIRDTSKH 234

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I   + H ++ D+     ++ +
Sbjct: 235 PPYRKIAGGGSPRLKILASELLGLEI-QGAAHSSIEDAQATMLLFRR 280


>gi|238898974|ref|YP_002924656.1| exonuclease I, 3' --> 5'-specific; deoxyribophosphodiesterase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466734|gb|ACQ68508.1| exonuclease I, 3' --> 5'-specific; deoxyribophosphodiesterase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 490

 Score = 65.6 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 26/204 (12%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKL 62
             +   ++D ET G     DR  +   +   L++        ++  P       PEA+ +
Sbjct: 3   QNLTFYIYDYETFGQHPGLDRPAQFAGIRTDLEFHPVEDPLVLYCSPAQDYLPDPEAVMI 62

Query: 63  HGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-- 118
            GIT +  L +  + +    +     ++ N   + +N  +FD  F      R   DP   
Sbjct: 63  TGITPQKALSEGVNEARFAHQIHRVLSQPNTCILGYNNIRFDDEFSRHIFYRNFYDPYAY 122

Query: 119 ---DPSRIIDTLSIARRKH---PSS-----------RNDLNSLCKRYGITISHRSKHGAL 161
              + +   D L + R  +   P                L  L K   I   H   H AL
Sbjct: 123 SWKNGNSRWDLLDLTRACYALRPEGIIWPKNEQGLPSFKLEHLTKANSIK--HTQAHDAL 180

Query: 162 LDSHLLSDVYIKMMVGGSQINFGF 185
            D +       K++       F +
Sbjct: 181 SDVYAT-MALAKLLKSAQPRLFHY 203


>gi|323977819|gb|EGB72905.1| exonuclease [Escherichia coli TW10509]
          Length = 474

 Score = 65.6 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 59/187 (31%), Gaps = 25/187 (13%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS-PEALK 61
           K +   +  D ET G     DR  +  A+   + ++        +  P       PEA+ 
Sbjct: 5   KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPEAVL 64

Query: 62  LHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + GIT +  + K  + ++  +     F   +      +N +FD         R   DP  
Sbjct: 65  ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYA 124

Query: 120 PSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGA 160
            S          +D +       P                L  L K  GI   H + H A
Sbjct: 125 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSNAHDA 182

Query: 161 LLDSHLL 167
           + D +  
Sbjct: 183 MADVYAT 189


>gi|312172834|emb|CBX81090.1| exodeoxyribonuclease I [Erwinia amylovora ATCC BAA-2158]
          Length = 475

 Score = 65.6 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 59/178 (33%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G     DR  +  A+   +D++        +  P       PEA+ + GIT +  
Sbjct: 14  DYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMITGITPQIA 73

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           + +  S +   +     F+  N   + +N  +FD         R   DP   S       
Sbjct: 74  RQRGLSEAEFTARIHLLFSAANTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWSWQHGNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L K  G+  +H + H A+ D +  
Sbjct: 134 WDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGV--AHENAHDAMSDVYAT 189


>gi|309802188|ref|ZP_07696296.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
 gi|308221071|gb|EFO77375.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
          Length = 552

 Score = 65.6 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 70/194 (36%), Gaps = 42/194 (21%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYS------------------KTNRTF-----QVFL 48
            DIETTG D     II+IG  E ++                     T   +        +
Sbjct: 325 VDIETTGTDPARTYIIDIGF-EFMNMMSPRPSDAPAEYRYEQSSYVTGDAYGQARLSFGV 383

Query: 49  CPNGRKNSPE-ALKLHGITDEFLKDKPSFSSIFSE----FWDFFNEQNAEWIAHNAKFDV 103
            P       +  L L GI    L   P     +            +Q   ++AHNA+F+ 
Sbjct: 384 TPENAAVGNDLILSLTGIDVRDLAGGPRLFDEWPAAQIGLLQRLEQQ--PYVAHNARFEH 441

Query: 104 GFINAELQRINKDPLDPS-RIIDTLSIARR---------KHPSSRNDLNSLCKRYG-ITI 152
           GF    +    +     +  IIDTL ++RR         +HP   N L S  KR G +  
Sbjct: 442 GFFMLNIAGYAESYRAGNITIIDTLPMSRRWDDGSIPDDEHPYGDNTLESYAKRQGALDS 501

Query: 153 SHRSKHGALLDSHL 166
           S   +H  L D+H+
Sbjct: 502 SKSERHLGLEDAHI 515


>gi|116666689|pdb|1ZBH|A Chain A, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
           3'- Exonuclease
 gi|116666690|pdb|1ZBH|B Chain B, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
           3'- Exonuclease
 gi|116666691|pdb|1ZBH|C Chain C, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
           3'- Exonuclease
 gi|116666692|pdb|1ZBH|D Chain D, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
           3'- Exonuclease
          Length = 299

 Score = 65.6 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 74/201 (36%), Gaps = 16/201 (7%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 80  ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 139

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGF---INAELQRIN 114
            GIT + +    +F  +  +  D         +    +  +  +D+     I  +L R+ 
Sbjct: 140 TGITQDQVDRADTFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLK 199

Query: 115 KDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             P       I        K P S+  L  + ++ G+    R   G L DS  ++ + ++
Sbjct: 200 YPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPNCG-LDDSKNIARIAVR 258

Query: 174 MMVGGSQINFGFKTNEDRFFK 194
           M+  G ++    K +  +   
Sbjct: 259 MLQDGCELRINEKMHAGQLMS 279


>gi|85059110|ref|YP_454812.1| exonuclease I [Sodalis glossinidius str. 'morsitans']
 gi|84779630|dbj|BAE74407.1| exonuclease I [Sodalis glossinidius str. 'morsitans']
          Length = 473

 Score = 65.6 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 65/200 (32%), Gaps = 26/200 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK--NSPEALKLHGIT 66
            +V D ET G     DR  +   +      +T    +VF C         PEA+ + GIT
Sbjct: 10  FLVHDYETFGKYPALDRPAQFAGIRADSQFETLGEPEVFFCRPADDYLPDPEAVMITGIT 69

Query: 67  DE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLD 119
            +  L+D  + +         F+  +   + +N  +FD       F              
Sbjct: 70  PQQALRDGVTEAEFARRIHQLFSVPDTCILGYNNVRFDDEVSRNLFYRNFYDPYGWSWQQ 129

Query: 120 PSRIIDTLSIARRKHPSSRN--------------DLNSLCKRYGITISHRSKHGALLDSH 165
            +   D L + R  +    N               L  L +  GI   H + H A+ D +
Sbjct: 130 GNSCWDLLDVVRACYALRPNGIEWPLNDDGLPSFRLEHLTRANGIE--HANAHDAMADVY 187

Query: 166 LLSDVYIKMMVGGSQINFGF 185
               +  K+M       F +
Sbjct: 188 ATLAM-AKLMRQAQPKLFDY 206


>gi|145632876|ref|ZP_01788609.1| exodeoxyribonuclease I [Haemophilus influenzae 3655]
 gi|145634313|ref|ZP_01790023.1| exodeoxyribonuclease I [Haemophilus influenzae PittAA]
 gi|229844163|ref|ZP_04464304.1| exonuclease I [Haemophilus influenzae 6P18H1]
 gi|319776340|ref|YP_004138828.1| exonuclease I [Haemophilus influenzae F3047]
 gi|329123492|ref|ZP_08252056.1| exodeoxyribonuclease I [Haemophilus aegyptius ATCC 11116]
 gi|144986532|gb|EDJ93098.1| exodeoxyribonuclease I [Haemophilus influenzae 3655]
 gi|145268293|gb|EDK08287.1| exodeoxyribonuclease I [Haemophilus influenzae PittAA]
 gi|229813157|gb|EEP48845.1| exonuclease I [Haemophilus influenzae 6P18H1]
 gi|317450931|emb|CBY87157.1| exonuclease I [Haemophilus influenzae F3047]
 gi|327471074|gb|EGF16529.1| exodeoxyribonuclease I [Haemophilus aegyptius ATCC 11116]
          Length = 473

 Score = 65.6 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 61/180 (33%), Gaps = 25/180 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE 68
           ++D E+ G++   DR  +   +    D++        +          PEA+ + GIT +
Sbjct: 9   IYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGITPQ 68

Query: 69  FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--- 123
              +K  S     +     F++ N   + +N  ++D         R   DP + S     
Sbjct: 69  ECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGN 128

Query: 124 -----IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLL 167
                +D +       P   N            L  L K  GI   H + H A+ D +  
Sbjct: 129 SRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIE--HENAHDAMADVYAT 186


>gi|324114057|gb|EGC08030.1| exonuclease [Escherichia fergusonii B253]
          Length = 474

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 59/191 (30%), Gaps = 26/191 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-P 57
           M   +K    +  D ET G     DR  +  A+    +++        +  P       P
Sbjct: 1   MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSNFNIIGEPEVFYCKPADDYLPQP 60

Query: 58  EALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINK 115
            A+ + GIT +  + K  + ++  +     F   +      +N +FD         R   
Sbjct: 61  GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  GI   H +
Sbjct: 121 DPYAWSWQHDNSRWDLLDVMRACYALRPEGIIWPENEEGLPSFRLEHLTKANGIE--HSN 178

Query: 157 KHGALLDSHLL 167
            H A+ D +  
Sbjct: 179 AHDAMADVYAT 189


>gi|292488688|ref|YP_003531575.1| exodeoxyribonuclease I [Erwinia amylovora CFBP1430]
 gi|292899843|ref|YP_003539212.1| exodeoxyribonuclease I [Erwinia amylovora ATCC 49946]
 gi|291199691|emb|CBJ46811.1| exodeoxyribonuclease I [Erwinia amylovora ATCC 49946]
 gi|291554122|emb|CBA21287.1| exodeoxyribonuclease I [Erwinia amylovora CFBP1430]
          Length = 475

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 59/178 (33%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G     DR  +  A+   +D++        +  P       PEA+ + GIT +  
Sbjct: 14  DYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMITGITPQIA 73

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           + +  S +   +     F+  N   + +N  +FD         R   DP   S       
Sbjct: 74  RQRGLSEAEFTARIHLLFSAANTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWSWQHGNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L K  G+  +H + H A+ D +  
Sbjct: 134 WDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGV--AHENAHDAMSDVYAT 189


>gi|218549424|ref|YP_002383215.1| exonuclease I [Escherichia fergusonii ATCC 35469]
 gi|218356965|emb|CAQ89597.1| exonuclease I [Escherichia fergusonii ATCC 35469]
          Length = 474

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 59/191 (30%), Gaps = 26/191 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-P 57
           M   +K    +  D ET G     DR  +  A+    D++        +  P       P
Sbjct: 1   MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSDFNIIGEPEVFYCKPADDYLPQP 60

Query: 58  EALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINK 115
            A+ + GIT +  + K  + ++  +     F   +      +N +FD         R   
Sbjct: 61  GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  GI   H +
Sbjct: 121 DPYAWSWQHDNSRWDLLDVMRACYALRPEGIIWPENEEGLPSFRLEHLTKANGIE--HSN 178

Query: 157 KHGALLDSHLL 167
            H A+ D +  
Sbjct: 179 AHDAMADVYAT 189


>gi|145631376|ref|ZP_01787147.1| exodeoxyribonuclease I [Haemophilus influenzae R3021]
 gi|144983035|gb|EDJ90539.1| exodeoxyribonuclease I [Haemophilus influenzae R3021]
          Length = 473

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 25/180 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE 68
           ++D E+ G++   DR  +   +    D++        +          PEA+ + GIT +
Sbjct: 9   IYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGITPQ 68

Query: 69  FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--- 123
              +K  S     +     F++ N   + +N  ++D         R   DP + S     
Sbjct: 69  ECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGN 128

Query: 124 -----IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                +D +       P                L  L K  GI   H + H A+ D +  
Sbjct: 129 SRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIE--HENAHDAMADVYAT 186


>gi|115896443|ref|XP_790825.2| PREDICTED: similar to exonuclease domain containing 1
           [Strongylocentrotus purpuratus]
 gi|115964487|ref|XP_001192090.1| PREDICTED: similar to exonuclease domain containing 1
           [Strongylocentrotus purpuratus]
          Length = 613

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 10  IVFDIETTGLDSKND---RIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           IV D E+T    K +    IIE    +      +    FQ ++ P+     S    +L G
Sbjct: 21  IVIDFESTCWKDKKNTSQEIIEFPAVLLNTTTGQLESEFQQYVMPDEHPVLSDFCTELTG 80

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE-----------------QNAEWIAHNAKFDVGFIN 107
           I+ E +++        ++F  +  +                 +   ++  +       + 
Sbjct: 81  ISQEQVENGVPLFICLNKFTSWLKKIESEKNLAYNRSTDDTRKLCTFVTWSDWDLSVCLR 140

Query: 108 AELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            E QR     P   +  ID  ++ R  +      L+   +  GI  + R  H  L D+  
Sbjct: 141 YECQRKQLYKPSALNHWIDARAVYRNFYQRKPKGLSGALQEVGIEFAGRQ-HSGLDDAKN 199

Query: 167 LSDVYIKMMVGG 178
            + +  +M+  G
Sbjct: 200 TAILVWRMIQDG 211


>gi|261211043|ref|ZP_05925333.1| exodeoxyribonuclease I [Vibrio sp. RC341]
 gi|260840018|gb|EEX66618.1| exodeoxyribonuclease I [Vibrio sp. RC341]
          Length = 474

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 66/204 (32%), Gaps = 25/204 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPE 58
           M ++++     FD ET G++   DR  +   V   +D++       ++   PN    +PE
Sbjct: 1   MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDIDFNIIGEPLVIYCQLPNDYLPAPE 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A  + GIT +             +      +      + +N+ +FD         R   D
Sbjct: 61  AALITGITPQKANSLGLPEPEFIARIHAELSTPKTTSLGYNSIRFDDEVTRYTCYRNFID 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L    GI   H + 
Sbjct: 121 PYAWSWQHGNSRWDLLDVIRACHALRPEGMKWPENEDGFTSFKLERLSVANGIE--HSNA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181
           H A+ D     ++  K+     ++
Sbjct: 179 HDAMADVIATIELAKKIKAAQPKL 202


>gi|296236689|ref|XP_002763437.1| PREDICTED: three prime repair exonuclease 2-like [Callithrix
           jacchus]
          Length = 278

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 33/196 (16%)

Query: 9   KIVFDIETTGLDSKNDRIIEIG--AVEL--LDYSKTNRT-----------FQVFLCPNGR 53
            +  D+E TGL S    I E+   AV    L+  + + +             + +CP  R
Sbjct: 52  FVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPERDESGAPVLPRVLDKLTLCMCPE-R 110

Query: 54  KNSPEALKLHGITDEFL---KDKPSFSSIFSEFWDFFNEQNAE--WIAHN-AKFDVGFIN 107
             + +A ++ G++ E L   +      ++      F + Q      +AHN   +D   + 
Sbjct: 111 PFTAKASEITGLSSEGLVRCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLC 170

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSK 157
           AELQR+       +  +DTL   R    + R+           L SL  RY       + 
Sbjct: 171 AELQRLGARLPRDTVCLDTLPALRGLDHAHRHGTRARGRQGYSLGSLFHRY-FQAEPSAA 229

Query: 158 HGALLDSHLLSDVYIK 173
           H A  D H L  +++ 
Sbjct: 230 HSAEGDVHTLLLIFLH 245


>gi|307149737|ref|YP_003890780.1| exonuclease RNase T/DNA polymerase III [Cyanothece sp. PCC 7822]
 gi|306986537|gb|ADN18415.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
          Length = 293

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 27/173 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           ++ D ETTG +  N++++E+GAV   +            +  +    + EA  ++ I   
Sbjct: 8   LIIDTETTG-NKDNNQVLEVGAVLYSIPNQCMLSCGSSLIAVDADTIN-EAYLINKID-- 63

Query: 69  FLKDKPSFSSIFSE----FWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLDPS 121
                P  + I  +    F ++     A     +AHNA FD   +         D +   
Sbjct: 64  -----PLATQICPQQQNYFLNWLQAAYASADVVVAHNANFDKDVVKKLTWAQKWDKI--- 115

Query: 122 RIIDTLSIARRKHP---SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             + +L       P   + + DL SL + YGI IS    H A+ D  LL +V+
Sbjct: 116 -WLCSLKDF-ELFPKQYNGKRDLISLSQFYGIGIS--CSHRAIDDCLLLKEVF 164


>gi|302339540|ref|YP_003804746.1| exodeoxyribonuclease I [Spirochaeta smaragdinae DSM 11293]
 gi|301636725|gb|ADK82152.1| Exodeoxyribonuclease I [Spirochaeta smaragdinae DSM 11293]
          Length = 484

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 58/184 (31%), Gaps = 37/184 (20%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--------NGRKNSPEALKLHG 64
           D+ET G   + DRI +          +T+        P              P+A  + G
Sbjct: 9   DLETFGTHPRLDRIAQFA------GLRTDEALNELGEPLVLYCKITQDYVPDPKACLITG 62

Query: 65  ITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122
           IT E  L+   S         + F +  +     N+  FD  FI A L R   DP     
Sbjct: 63  ITPEETLRKGLSERRFIERINEEFMQPGSCVAGFNSIAFDDEFIRATLYRNLMDPFRREW 122

Query: 123 I--------IDTLSIARRK------HPSSRN-----DLNSLCKRYGITISHRSKHGALLD 163
                    +D L  AR         P   N      L  L +     + H++ H AL D
Sbjct: 123 AGGNSRWDLLDVLRAARDLRPQGITWPEGENGRPTFRLEKLTEA--NALPHQNAHDALSD 180

Query: 164 SHLL 167
               
Sbjct: 181 VRAT 184


>gi|119480299|ref|XP_001260178.1| exonuclease, putative [Neosartorya fischeri NRRL 181]
 gi|119408332|gb|EAW18281.1| exonuclease, putative [Neosartorya fischeri NRRL 181]
          Length = 311

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 56/167 (33%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G+    D    +  V +++++   + +  ++ P           + GI+ 
Sbjct: 115 KYVAMDCEMVGVGPNPDSDSALARVSIVNFNG-EQVYDSYVRPKEMVTDWR-THVSGISP 172

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +  S   +  +  +  + +    + H    D+  +      +   P    R     
Sbjct: 173 KHMAEARSLEQVQKDVAEILDGR--ILVGHAVSNDLDVL------LLGHPKRDIRDTSKH 224

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I     H ++ D+     +Y +
Sbjct: 225 PPYRKIAGGGSPRLKILASEFLGLNI-QDGAHSSVEDAKATMLLYRR 270


>gi|323492478|ref|ZP_08097626.1| hypothetical protein VIBR0546_15616 [Vibrio brasiliensis LMG 20546]
 gi|323313265|gb|EGA66381.1| hypothetical protein VIBR0546_15616 [Vibrio brasiliensis LMG 20546]
          Length = 176

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 24/186 (12%)

Query: 4   KNKMRKIVFDIE----------TTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVFLCPN 51
            N  R + FD+E          TTG       IIE+G   ++L+      R  Q ++ P 
Sbjct: 1   MNHNRVVCFDLEMCCWNENGVGTTG------EIIEVGLAEIDLVSGEIVKRA-QYYVKPE 53

Query: 52  GRKNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
             + S    +L GIT   + K     + +       F   N  + A     D   +  E 
Sbjct: 54  HDEVSLFCSQLTGITPRKIEKQGRPLAEVIKSMVKNFGGANKIYAA--WGRDDRVLREEC 111

Query: 111 QRINKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           Q    D P +    + TL   + +    R    +  +  GI    R  H   +D++ L+ 
Sbjct: 112 QAKGIDMPFNEFINLATLYRIQNRLKDKRIGHKAAQESKGIEWEGRQ-HSGYVDAYNLAK 170

Query: 170 VYIKMM 175
           + + M+
Sbjct: 171 LALTML 176


>gi|186682035|ref|YP_001865231.1| exonuclease, RNase T and DNA polymerase III [Nostoc punctiforme PCC
           73102]
 gi|186464487|gb|ACC80288.1| Exonuclease, RNase T and DNA polymerase III [Nostoc punctiforme PCC
           73102]
          Length = 187

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 11/183 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYS--KTNRTFQVFLCPNGR 53
           M  K     ++ D+E T  D K        IIEIGAV +L+ +  + +  FQ F+ P   
Sbjct: 1   MQTKISHYYLIVDLEATCCDKKTIPRHEMEIIEIGAV-MLNRATWEIDSEFQQFIQPVRH 59

Query: 54  K-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
              +    KL  I  + + + P F    S F ++              +D      +   
Sbjct: 60  PQLTDFCTKLTSIQQQDVDEAPKFIEAISRFKEWICSFPNHIFCSWGNYDKKQFIQDCAF 119

Query: 113 INKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            N      S  I+     +     S R  +       GI +   + H  + D+H ++ +Y
Sbjct: 120 HNFAYPFTSEHINIKEEFSEYLGVSKRFGMAQALNELGIELKG-THHRGIDDAHNIASIY 178

Query: 172 IKM 174
            ++
Sbjct: 179 RQI 181


>gi|169795305|ref|YP_001713098.1| putative DNA exonuclease X [Acinetobacter baumannii AYE]
 gi|213158710|ref|YP_002320008.1| exodeoxyribonuclease X, putative [Acinetobacter baumannii AB0057]
 gi|260554415|ref|ZP_05826636.1| exonuclease [Acinetobacter baumannii ATCC 19606]
 gi|169148232|emb|CAM86095.1| putative DNA exonuclease X [Acinetobacter baumannii AYE]
 gi|213057870|gb|ACJ42772.1| exodeoxyribonuclease X, putative [Acinetobacter baumannii AB0057]
 gi|260410957|gb|EEX04254.1| exonuclease [Acinetobacter baumannii ATCC 19606]
          Length = 234

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 94/236 (39%), Gaps = 34/236 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVF--LCPNGRKNS 56
           M +   M+ I+ D ET    + N   IEI    +E+     T    ++F  L   G   S
Sbjct: 1   MFKGPDMQAIILDTET---HTLNGLPIEIAYAPIEINAGKLTLDKSKLFDQLYQVGTPIS 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
             A+ +H I +  L+++P     +  F     +     I HN  +D+  I     R   D
Sbjct: 58  YAAMAVHHILESDLENQP----HYKTFK--LPDTTTYIIGHNIDYDIAAI----ARCGVD 107

Query: 117 PLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISH-------RSKHGALLDSHLLS 168
            +   + I TL++AR+  P +  +++++L   Y I+          +  H A  D  L +
Sbjct: 108 -VSHIKPICTLALARKTWPDAEAHNISALI--YMISQGSSKARELLKGAHRADADIILTA 164

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDE 223
           ++ + ++      +      E+ +   E+  +P  I+  K        + K+ +  
Sbjct: 165 NILMHIVY-----HLNIHDIEELYRVSEEARIPTTINFGKHKGTAIAELPKDYIQW 215


>gi|67901014|ref|XP_680763.1| hypothetical protein AN7494.2 [Aspergillus nidulans FGSC A4]
 gi|40742884|gb|EAA62074.1| hypothetical protein AN7494.2 [Aspergillus nidulans FGSC A4]
          Length = 726

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 56/167 (33%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D E  G+    D    +  V +++Y+  ++ +  ++ P           + GI  
Sbjct: 530 KYIAMDCEMVGIGPDPDNDSALARVSIVNYNG-DQVYDSYVRPKEMVTDWR-THVSGILP 587

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +  S   +  E  +    +    + H  + D+  +      +   P    R     
Sbjct: 588 KHMAEARSLEQVQKEVAEIL--EGRILVGHALRNDLDAL------LLSHPKRDIRDTSKH 639

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I     H ++ D+     +Y +
Sbjct: 640 PPYRKVAGGGSPRLKILASEFLGLNI-QAGAHSSMEDAKATMLLYRR 685


>gi|260582707|ref|ZP_05850495.1| exodeoxyribonuclease I [Haemophilus influenzae NT127]
 gi|260094273|gb|EEW78173.1| exodeoxyribonuclease I [Haemophilus influenzae NT127]
          Length = 473

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 25/180 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE 68
           ++D E+ G++   DR  +   +    D++        +          PEA+ + GIT +
Sbjct: 9   IYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGITPQ 68

Query: 69  FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--- 123
              +K  S     +     F++ N   + +N  ++D         R   DP + S     
Sbjct: 69  ECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGN 128

Query: 124 -----IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                +D +       P                L  L K  GI   H + H A+ D +  
Sbjct: 129 SRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIE--HENAHDAMADVYAT 186


>gi|196009752|ref|XP_002114741.1| hypothetical protein TRIADDRAFT_28382 [Trichoplax adhaerens]
 gi|190582803|gb|EDV22875.1| hypothetical protein TRIADDRAFT_28382 [Trichoplax adhaerens]
          Length = 276

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 72/191 (37%), Gaps = 23/191 (12%)

Query: 9   KIVFDIETTG--LDSKN--DRIIEIGAVELLDYSKTNRT-FQVFLCPNGRK-NSPEALKL 62
             V D E T   ++ +     IIE  A+ +   +    + F  +  P      S    KL
Sbjct: 81  YCVIDFEATCEEVNPRKYKHEIIEFPALMVNARTLAVESQFHFYCRPVMNPKLSSFCTKL 140

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            GI  + +    +F  +F  F  +  +   ++   +  +  FD+        +++K P+ 
Sbjct: 141 TGIDQKTIDSADAFKVVFQNFQKWLEDVLGESTFVVVTDGPFDITRFLTIQCKVDKIPMP 200

Query: 120 PSRIIDT---------LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                 T           ++ ++ P+ ++ L +L     I    R  H  + D+  ++ +
Sbjct: 201 YWASNWTNLKRTFKAFYKLSGQRFPTLQDMLGAL----KIPHDGR-LHSGIDDAKNIAKI 255

Query: 171 YIKMMVGGSQI 181
             +++  G Q+
Sbjct: 256 LCQLIRDGCQV 266


>gi|145636088|ref|ZP_01791758.1| exonuclease I [Haemophilus influenzae PittHH]
 gi|145270610|gb|EDK10543.1| exonuclease I [Haemophilus influenzae PittHH]
          Length = 440

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 25/180 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE 68
           ++D E+ G++   DR  +   +    D++        +          PEA+ + GIT +
Sbjct: 9   IYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGITPQ 68

Query: 69  FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--- 123
              +K  S     +     F++ N   + +N  ++D         R   DP + S     
Sbjct: 69  ECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGN 128

Query: 124 -----IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                +D +       P                L  L K  GI   H + H A+ D +  
Sbjct: 129 SRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIE--HENAHDAMADVYAT 186


>gi|63079718|ref|NP_542432.2| three prime repair exonuclease 2 [Homo sapiens]
 gi|114690568|ref|XP_001137293.1| PREDICTED: three prime repair exonuclease 2 isoform 1 [Pan
           troglodytes]
 gi|332861931|ref|XP_003317815.1| PREDICTED: three prime repair exonuclease 2 isoform 2 [Pan
           troglodytes]
 gi|12751317|gb|AAK07617.1|AF319570_2 3'-5' exonuclease TREX2 [Homo sapiens]
 gi|12751323|gb|AAK07620.1|AF319573_2 3'-5' exonuclease TREX2 [Homo sapiens]
 gi|5731109|gb|AAD48776.1| 3'-5' exonuclease TREX2 [Homo sapiens]
 gi|71648780|gb|AAZ38719.1| three prime repair exonuclease 2 [Homo sapiens]
 gi|162317630|gb|AAI56245.1| Three prime repair exonuclease 2 [synthetic construct]
 gi|162318146|gb|AAI57022.1| Three prime repair exonuclease 2 [synthetic construct]
 gi|261860926|dbj|BAI46985.1| three prime repair exonuclease 2 [synthetic construct]
          Length = 236

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 35/226 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIE---IGAVELLDYSKTNRTFQVFLCP-----------NGRK 54
            +  D+E TGL S    I E            +  +      + P             R 
Sbjct: 10  FVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERP 69

Query: 55  NSPEALKLHGITDEFL---KDKPSFSSIFSEFWDFFNEQNAE--WIAHN-AKFDVGFINA 108
            + +A ++ G++ E L   +      ++      F + Q      +AHN   +D   + A
Sbjct: 70  FTAKASEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCA 129

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKH 158
           EL+R+       +  +DTL   R    +  +           L SL  RY       + H
Sbjct: 130 ELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRY-FRAEPSAAH 188

Query: 159 GALLDSHLLSDVYIK----MMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A  D H L  +++     ++    +   G+   E  +   +  ++
Sbjct: 189 SAEGDVHTLLLIFLHRAAELLAWADEQARGWAHIEPMYLPPDDPSL 234


>gi|68250106|ref|YP_249218.1| exonuclease I [Haemophilus influenzae 86-028NP]
 gi|148825915|ref|YP_001290668.1| exonuclease I [Haemophilus influenzae PittEE]
 gi|68058305|gb|AAX88558.1| exodeoxyribonuclease I [Haemophilus influenzae 86-028NP]
 gi|148716075|gb|ABQ98285.1| exodeoxyribonuclease I [Haemophilus influenzae PittEE]
          Length = 473

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 25/180 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE 68
           ++D E+ G++   DR  +   +    D++   +    +          PEA+ + GIT +
Sbjct: 9   IYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGITPQ 68

Query: 69  FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--- 123
              +K  S     +     F++ N   + +N  ++D         R   DP + S     
Sbjct: 69  ECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGN 128

Query: 124 -----IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLL 167
                +D +       P   N            L  L K  GI   H + H A+ D +  
Sbjct: 129 SRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIE--HENAHDAMADVYAT 186


>gi|260801299|ref|XP_002595533.1| hypothetical protein BRAFLDRAFT_117464 [Branchiostoma floridae]
 gi|229280780|gb|EEN51545.1| hypothetical protein BRAFLDRAFT_117464 [Branchiostoma floridae]
          Length = 231

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 66/196 (33%), Gaps = 29/196 (14%)

Query: 7   MRKIVFDIETT----GLDSKNDRIIEI--GAVELLDY-------------SKTNRTFQVF 47
              +  D+ETT    GL+    ++ EI   AV                   +    F   
Sbjct: 19  QTFVFLDLETTDLRTGLEEDEPQVTEISLAAVRRDQLLSGTTVPPGGASLPRIMDKFTAC 78

Query: 48  LCPNGRKNSPEALKLHGITDEFLKDKPSFSS-IFSEFWDFFNEQ--NAEWIAHN-AKFDV 103
           + P      P+A ++  +T++ L     F   +        N Q      +AHN   FD 
Sbjct: 79  VRPT-HSIHPKAAEITNLTNQSLGKHRVFDEDLVKSVVHLLNRQEPPVCLVAHNGDWFDF 137

Query: 104 GFINAELQRINKDPLDPSR--IIDTLSIARRKHPSS--RNDLNSLCK-RYGITISHRSKH 158
             + +EL+R     L P     +DT+   +  +        L  L +  +G+       H
Sbjct: 138 PVLKSELRRSKTAGLFPKDVLCVDTMLAMKHLYAGQFRSFSLPRLHENLFGVAPPPEVAH 197

Query: 159 GALLDSHLLSDVYIKM 174
            A  D   +  +  KM
Sbjct: 198 TAEGDVITMVKIVKKM 213


>gi|260772767|ref|ZP_05881683.1| hypothetical protein VIB_001223 [Vibrio metschnikovii CIP 69.14]
 gi|260611906|gb|EEX37109.1| hypothetical protein VIB_001223 [Vibrio metschnikovii CIP 69.14]
          Length = 176

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 20/183 (10%)

Query: 4   KNKMRKIVFDIE----------TTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNG 52
            N  R + FD+E          TTG       IIE+G  E+ L   K  +  Q ++ P  
Sbjct: 1   MNYNRVVCFDLEMCCWNENGVGTTG------EIIEVGLAEIDLTAGKIVKRAQYYVQPEQ 54

Query: 53  RKNSPEALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            K S   ++L GIT   +  +    + +       F      +     + D+       Q
Sbjct: 55  DKISEFCVELTGITPRKVAKQGRPLADVLRSMVKNFGGSKKIYACW-GRDDLILAKECAQ 113

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +    P+     + TL   + +    R    +  +  GI    R  H   +D++ L+ + 
Sbjct: 114 KGLPMPIHECINLATLYRLQHRLKDKRIGHRAAQEAQGIDWEGRQ-HSGYVDAYNLAKLA 172

Query: 172 IKM 174
           + M
Sbjct: 173 LTM 175


>gi|154252272|ref|YP_001413096.1| exodeoxyribonuclease I [Parvibaculum lavamentivorans DS-1]
 gi|154156222|gb|ABS63439.1| Exodeoxyribonuclease I [Parvibaculum lavamentivorans DS-1]
          Length = 468

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 63/188 (33%), Gaps = 33/188 (17%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHG 64
           M  + FD ETTGL    D+I+   A+           F     L P+   + P AL  +G
Sbjct: 1   MSFVFFDTETTGLRHGFDQIVHFAAIRTDADLNEIDRFEAHSRLLPHVVPH-PFALYTNG 59

Query: 65  -----ITDEFLKDKPSFSSIFSEF-WDFFNEQNAEWIAHNA-KFDVGFI-NAELQRINKD 116
                +TD+ L   PS   +         +   + ++ +N+ +FD   +  A  Q ++  
Sbjct: 60  LSIGRLTDDGL---PSHYVMVQTIRRKLLSWSPSIFVGYNSIRFDEEMLRQAFFQTLHPA 116

Query: 117 PLDPSRIID------------TLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHG 159
            L  +                 LS +    P          L  L    GI   H   H 
Sbjct: 117 YLTSNHGNCRADALGLMTAAAALSPSCLLVPFGATGRPTFRLEQLASANGIE--HTRAHD 174

Query: 160 ALLDSHLL 167
           A+ D    
Sbjct: 175 AMADVLAT 182


>gi|119511646|ref|ZP_01630752.1| Exonuclease [Nodularia spumigena CCY9414]
 gi|119463718|gb|EAW44649.1| Exonuclease [Nodularia spumigena CCY9414]
          Length = 230

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 58/166 (34%), Gaps = 10/166 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ ++ D ET   +      I     ++ +YS    +    + P    +   A  ++GI 
Sbjct: 1   MKLLIIDTETAD-NENTPCEISATLYQVEEYSGAIASVSSLI-PVEANS---AQAINGIC 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIID 125
            E  +                +      +A NA+FD G +N      IN+  L   R  D
Sbjct: 56  PELTQAAHPIYQPSLALLREMSAIADYGVAFNAEFDSGVVNQFFPDLINQPWLCAMRDFD 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               +   H      L  L    GI IS  + H A  D  LL + +
Sbjct: 116 WGYHSINSHGG--YKLTDLALWLGIGIS--TVHRAADDVRLLVECF 157


>gi|73958918|ref|XP_851106.1| PREDICTED: similar to CG6393-PA, isoform A [Canis familiaris]
          Length = 279

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 72/230 (31%), Gaps = 31/230 (13%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           IV D E+T    G   ++  IIE    +      +    F  ++ P      S   ++L 
Sbjct: 38  IVIDFESTCWNDGKHHQSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPVLSEFCMELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDF------------------FNEQNAEWIAHNAKFDVG- 104
           GI    + +        S+F  +                   +    +  A     D   
Sbjct: 98  GIKQAQVDEGVPLRICLSQFCKWIQKIQQQKKIIFATGISDLSNSEVKLCAFVTWSDWDL 157

Query: 105 --FINAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +  E +R     P+  +  ID     +  +      L+   +  GI    +  H  L
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFYRRKPKGLSGALQEVGIEFLGQE-HSGL 216

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
            DS   + +  KM+  G  +      N+           P +S  ++++P
Sbjct: 217 DDSRNTAMLAWKMIRDGCLMKITRSLNKVVLRGMYPG--PRLSHQQKNRP 264


>gi|15602476|ref|NP_245548.1| exonuclease I [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720883|gb|AAK02695.1| SbcB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 475

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 31/193 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           M         ++D E+ G+D  +DR  +   +   ++++  +     +          PE
Sbjct: 1   MSTSPDFSFFIYDYESFGVDPASDRPAQFAGIRTDINFNIISDPVMFYCKQTNDYLPAPE 60

Query: 59  ALKLHGITDEFLKDK----PSFSS-IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           A+ + GIT +   +K    P F+  I  EF             +N ++D         R 
Sbjct: 61  AVLVTGITPQECNEKGIPEPEFAERILQEFS---RPNTCVMGFNNIRYDDEMTRYTFYRN 117

Query: 114 NKDPLDPSR-----IIDTLS--------------IARRKHPSSRNDLNSLCKRYGITISH 154
             DP + S        D L                A  +       L  L K  GI   H
Sbjct: 118 FIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDEEGMPSFRLEKLTKANGIE--H 175

Query: 155 RSKHGALLDSHLL 167
            + H A+ D +  
Sbjct: 176 SNAHDAMADVYAT 188


>gi|309973062|gb|ADO96263.1| Exodeoxyribonuclease I [Haemophilus influenzae R2846]
          Length = 473

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 25/180 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE 68
           ++D E+ G++   DR  +   +    D++   +    +          PEA+ + GIT +
Sbjct: 9   IYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGITPQ 68

Query: 69  FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--- 123
              +K  S     +     F++ N   + +N  ++D         R   DP + S     
Sbjct: 69  ECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGN 128

Query: 124 -----IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLL 167
                +D +       P   N            L  L K  GI   H + H A+ D +  
Sbjct: 129 SRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIE--HENAHDAMADVYAT 186


>gi|281347637|gb|EFB23221.1| hypothetical protein PANDA_019230 [Ailuropoda melanoleuca]
          Length = 248

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 31/195 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQ------------VFLCPNGRK 54
            +  D+E TGL S +  + EI   AV        ++                      R 
Sbjct: 22  FVFLDLEATGLPSIDPEVAEISLFAVHRSSLENPDQDESGAPVLPRVLDKLTLCMSPERP 81

Query: 55  NSPEALKLHGITDEFL---KDKPSFSSIFSEFWDFFNEQNAE--WIAHN-AKFDVGFINA 108
            + +A ++ G++ + L   +     +++      F + Q      +AHN   +D   +  
Sbjct: 82  FTAKASEITGLSSDSLARCRKAGFDNAVVRTLEAFLSRQEGPICLVAHNGFDYDFPLLCT 141

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKH 158
           EL+R+       +  +DTL   R    +  +           L SL +RY       + H
Sbjct: 142 ELRRLGAHLPPDTICLDTLPALRSLDRAHSHGTRAQGCKGYSLGSLFRRY-FQAEPSAAH 200

Query: 159 GALLDSHLLSDVYIK 173
            A  D H L  V++ 
Sbjct: 201 SAEGDVHTLLMVFLH 215


>gi|310780268|ref|YP_003968600.1| Exodeoxyribonuclease I [Ilyobacter polytropus DSM 2926]
 gi|309749591|gb|ADO84252.1| Exodeoxyribonuclease I [Ilyobacter polytropus DSM 2926]
          Length = 487

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 64/190 (33%), Gaps = 27/190 (14%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K   + +D ET G D K DRI +   V   +D+   +              +PEA  + G
Sbjct: 2   KKTYLWYDYETFGADPKRDRISQFAGVRTDMDFKVVDEMVYYCKVAEDYLPNPEASIITG 61

Query: 65  ITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL---- 118
           IT +   +K  + + +    +  F ++    I +N+ KFD         R  +DP     
Sbjct: 62  ITPKESNEKGITENELAEILFKEFTKEGTVTIGYNSIKFDDEVTRNLFYRTFRDPYEREW 121

Query: 119 -DPSRIID--------------TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +     D               L    +        L  L    GI   H + H A  D
Sbjct: 122 KNNCSRWDFMRAILGVYVMKPELLKWPLKDDGRPSFRLEELSIANGII--HENAHDAKSD 179

Query: 164 SHLL---SDV 170
            +     +++
Sbjct: 180 VYATIGLAEL 189


>gi|147900544|ref|NP_001089554.1| exoribonuclease 1 [Xenopus laevis]
 gi|67678439|gb|AAH97876.1| Thex1 protein [Xenopus laevis]
          Length = 348

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 72/190 (37%), Gaps = 20/190 (10%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKL 62
             V D E T   G        IIE   V L  +  +    FQ ++ P      S   + L
Sbjct: 129 ICVIDFEATCEAGNSLDYPHEIIEFPIVLLNTHTLEIEDVFQCYVRPEINPQLSEFCVNL 188

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQRINK 115
            GIT + +    +F ++     ++  E       + A     +  +D+        RI++
Sbjct: 189 TGITQDTVDKSDTFPNVLRSVVEWMREKELGSKYKYAILT--DGSWDMSKFLNMQCRISR 246

Query: 116 --DPLDPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              P    + I+        +  P ++  L ++ ++ G+T + R  H  L DS  ++ + 
Sbjct: 247 LKYPRFAKKWINIRKSYGNFYKVPRTQTKLTTMLEKLGMTYNGR-LHSGLDDSKNIARIA 305

Query: 172 IKMMVGGSQI 181
             M+  G ++
Sbjct: 306 AHMLQDGCEL 315


>gi|319897029|ref|YP_004135224.1| exonuclease i [Haemophilus influenzae F3031]
 gi|317432533|emb|CBY80893.1| exonuclease I [Haemophilus influenzae F3031]
          Length = 473

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 25/180 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE 68
           ++D E+ G++   DR  +   +    D++   +    +          PEA+ + GIT +
Sbjct: 9   IYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGITPQ 68

Query: 69  FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--- 123
              +K  S     +     F++ N   + +N  ++D         R   DP + S     
Sbjct: 69  ECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGN 128

Query: 124 -----IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLL 167
                +D +       P   N            L  L K  GI   H + H A+ D +  
Sbjct: 129 SRWDLLDLVRACYALRPEGINWAYDDAGMPSFRLEKLTKANGIE--HENAHDAMADVYAT 186


>gi|162312186|ref|XP_001713129.1| double-strand siRNA ribonuclease [Schizosaccharomyces pombe 972h-]
 gi|121732820|sp|Q08I43|ERI1_SCHPO RecName: Full=3'-5' exonuclease eri1; AltName: Full=Enhanced RNAi
           protein
 gi|115345157|emb|CAL48264.1| double-strand siRNA ribonuclease [Schizosaccharomyces pombe]
          Length = 313

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 75/205 (36%), Gaps = 40/205 (19%)

Query: 7   MRKI-VFDIETT-----GLDSKNDRIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPE 58
           +R + + D+E T     G     + IIE+  +  +L++ S  +  F  ++ P+      +
Sbjct: 79  LRYLLIVDVEATCEEGCGFS-FENEIIELPCLLFDLIEKSIIDE-FHSYVRPSMNPTLSD 136

Query: 59  ALK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH-------------------N 98
             K L GI    +   P FS +  E + F  + +   +                     N
Sbjct: 137 YCKSLTGIQQCTVDKAPIFSDVLEELFIFLRKHSNILVPSVDEIEIIEPLKSVPRTQPKN 196

Query: 99  A------KFDV-GFINAELQ--RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
                   +D+  F+  + +  ++          +D  S  +  +   R ++N + + +G
Sbjct: 197 WAWACDGPWDMASFLAKQFKYDKMPIPDWIKGPFVDIRSFYKDVYRVPRTNINGMLEHWG 256

Query: 150 ITISHRSKHGALLDSHLLSDVYIKM 174
           +       H  + D+  LS +  KM
Sbjct: 257 LQFEGSE-HRGIDDARNLSRIVKKM 280


>gi|229846770|ref|ZP_04466877.1| exonuclease I [Haemophilus influenzae 7P49H1]
 gi|229810259|gb|EEP45978.1| exonuclease I [Haemophilus influenzae 7P49H1]
          Length = 473

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 25/180 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE 68
           ++D E+ G++   DR  +   +    D++   +    +          PEA+ + GIT +
Sbjct: 9   IYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGITPQ 68

Query: 69  FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--- 123
              +K  S     +     F++ N   + +N  ++D         R   DP + S     
Sbjct: 69  ECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGN 128

Query: 124 -----IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLL 167
                +D +       P   N            L  L K  GI   H + H A+ D +  
Sbjct: 129 SRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIE--HENAHDAMADVYAT 186


>gi|153872365|ref|ZP_02001281.1| Exodeoxyribonuclease I [Beggiatoa sp. PS]
 gi|152071166|gb|EDN68716.1| Exodeoxyribonuclease I [Beggiatoa sp. PS]
          Length = 312

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 57/187 (30%), Gaps = 23/187 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITD 67
            + +DIETTGL+    +I++  A+             + +        SP+A   H I+ 
Sbjct: 5   YLFYDIETTGLNKTFAQILQFAAIRTDMQFNEIERHDILIKLRPDVIPSPKATITHRISI 64

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP-----S 121
                         +     N+     + +N   FD  F+     R    P         
Sbjct: 65  AQSMQGLCEFEAIMQIHRLMNQSGTISLGYNTSSFDDEFLRFCFHRNLLPPYTHQYKDGC 124

Query: 122 RIIDTLSIARRKHPSSR--------------NDLNSLCKRYGITISHRSKHGALLDSHLL 167
           R  D L I    +   +                L  L +   + I     H A++D    
Sbjct: 125 RRSDLLPITIMYYLYKKEVLENWPEIDGKPTMRLEKLSEVNQLAI--GQAHNAIVDVEAT 182

Query: 168 SDVYIKM 174
            ++  ++
Sbjct: 183 VELARRL 189


>gi|297698262|ref|XP_002826233.1| PREDICTED: ERI1 exoribonuclease 2-like isoform 2 [Pongo abelii]
          Length = 691

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 67/209 (32%), Gaps = 34/209 (16%)

Query: 3   RKNKMRK---IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK 54
           RK+K      IV D E+T    G    +  IIE    +      +    FQ ++ P    
Sbjct: 28  RKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIESEFQAYVQPQEHP 87

Query: 55  N-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNA 92
             S   ++L GI    + +        S+F  + ++                     +  
Sbjct: 88  ILSEFCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSTSEVKLC 147

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS---IARRKHPSSRNDLNSLCKRYG 149
            ++  +       +  E +R          + D +     AR  +      L+   +  G
Sbjct: 148 AFVTWSDWDLGVCLEYECKRKQLFKTSEKSLKDDIRAKSTARLFYRRKPKGLSGALQEVG 207

Query: 150 ITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           I  S R  H  L DS   S +  KM+  G
Sbjct: 208 IEFSGRE-HSGLDDSRNTSLLAWKMIRDG 235


>gi|254519816|ref|ZP_05131872.1| exonuclease [Clostridium sp. 7_2_43FAA]
 gi|226913565|gb|EEH98766.1| exonuclease [Clostridium sp. 7_2_43FAA]
          Length = 209

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 40/193 (20%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           M+ + FD ETT +   N  I ++  + +           + F   +          A  +
Sbjct: 1   MKLLFFDTETTSIKPGN--ICQLSYIVIDASVKPQKTIGKNFFFTVD----SMDEGAEAI 54

Query: 63  HGITDE---FLKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115
           HG + E    L +   F     EF  DFF+      I HN +FD+ F+  ELQ++ +   
Sbjct: 55  HGFSLEKLYDLSEGKEFLDCVHEFMPDFFDAD--FIIGHNVQFDIKFLKHELQQLWEAGL 112

Query: 116 --DPLDPSRIIDTLSIAR--RKHPSSRN-----DLNSLCKRYGITISH------------ 154
                +P     T++  +     PS         L  +     I+               
Sbjct: 113 IDTTWEPKNTFCTMAYYKSPCNLPSPSGNIKNPKLAEVIDFLQISEDQITNKANELFEGS 172

Query: 155 RSKHGALLDSHLL 167
            + H A  D+   
Sbjct: 173 GNYHDARFDTAAT 185


>gi|262394326|ref|YP_003286180.1| hypothetical protein VEA_003555 [Vibrio sp. Ex25]
 gi|262337920|gb|ACY51715.1| hypothetical protein VEA_003555 [Vibrio sp. Ex25]
          Length = 176

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 67/178 (37%), Gaps = 8/178 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKN----DRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE 58
            N  R + FD+E    +         IIE+G  E+ L   +  +  Q ++ P   + S  
Sbjct: 1   MNHNRIVCFDLEMCCWNENGVGSTGEIIEVGLAEIDLSRGEIVKRAQYYVKPEHDEVSLF 60

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             +L GIT   + K       +       F  +N  + +   + D+  +    Q+  + P
Sbjct: 61  CAELTGITPRKIEKQGRPLEEVLKSMVKNFGGRNKIYASW-GRDDLILLEECKQKGIEAP 119

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 + TL   + +    R    +  +  GI    R  H   +D++ L+ + + M+
Sbjct: 120 FTEFINLATLYRIQNRLKDKRIGHRAAQEAKGIDWEGRQ-HSGYVDAYNLAKLALTML 176


>gi|152998196|ref|YP_001343031.1| exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1]
 gi|150839120|gb|ABR73096.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1]
          Length = 187

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 70/188 (37%), Gaps = 13/188 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++  K   I  DIE +G       ++ IGA    D       F  +L P   +  P AL+
Sbjct: 1   MKDGKEIFISVDIEASGPIPGKYSMLSIGACVTSDPLI---QFTCYLKPISDEYIPAALE 57

Query: 62  LHGITDEFL-KDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQRINK 115
           + G++ E L +D        ++F  +       ++N   +  NA FD  FIN        
Sbjct: 58  VTGLSLEQLNRDGLEPIEAMTQFKTWVESLIEKDENVVLVGFNASFDWSFINYYFHYFLG 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY---- 171
           +       +D  S+      SS     S      +       H AL D+   ++++    
Sbjct: 118 ENPFGIAALDIKSMYFGASDSSWRSTRSSEIEKVVKPESAGDHDALHDAIYQAELFSLIR 177

Query: 172 IKMMVGGS 179
            K+MV G 
Sbjct: 178 KKLMVKGE 185


>gi|109898489|ref|YP_661744.1| exodeoxyribonuclease I [Pseudoalteromonas atlantica T6c]
 gi|109700770|gb|ABG40690.1| Exodeoxyribonuclease I subunit C [Pseudoalteromonas atlantica T6c]
          Length = 476

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 59/178 (33%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVF-LCPNGRKNSPEALKLHGITDEF- 69
           D ET G++ + D   +   +   LD +  ++   +F   PN    +P+A  + GIT +  
Sbjct: 10  DYETWGVNPQKDPACQFAGIRTDLDLNIISQPLMIFNQIPNDYLPNPQACLITGITPQHS 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------DP 120
           L+D         +    F+        +N  +FD       L R   DP           
Sbjct: 70  LRDGMVEPDFIQKIHQEFSAPETCVAGYNNIRFDDEVTRYTLYRNFYDPYGREWRNGNSR 129

Query: 121 SRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             IID +       P                L  L K   I   H + H A+ D H  
Sbjct: 130 WDIIDVVRACYALRPEGIEWPLKDDGSPSFKLEDLSKANNIE--HAAAHDAMSDVHAT 185


>gi|259483801|tpe|CBF79489.1| TPA: exonuclease, putative (AFU_orthologue; AFUA_2G05560)
           [Aspergillus nidulans FGSC A4]
          Length = 299

 Score = 65.2 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 56/167 (33%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D E  G+    D    +  V +++Y+  ++ +  ++ P           + GI  
Sbjct: 103 KYIAMDCEMVGIGPDPDNDSALARVSIVNYNG-DQVYDSYVRPKEMVTDWR-THVSGILP 160

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +  S   +  E  +    +    + H  + D+  +      +   P    R     
Sbjct: 161 KHMAEARSLEQVQKEVAEIL--EGRILVGHALRNDLDAL------LLSHPKRDIRDTSKH 212

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I     H ++ D+     +Y +
Sbjct: 213 PPYRKVAGGGSPRLKILASEFLGLNI-QAGAHSSMEDAKATMLLYRR 258


>gi|159904464|ref|YP_001548126.1| hypothetical protein MmarC6_0068 [Methanococcus maripaludis C6]
 gi|159885957|gb|ABX00894.1| hypothetical protein MmarC6_0068 [Methanococcus maripaludis C6]
          Length = 153

 Score = 65.2 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 50/142 (35%), Gaps = 34/142 (23%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            IV D ETTGL+   DRII IG             F  F+  + +              E
Sbjct: 4   IIVLDTETTGLNPLTDRIITIGLWH-------VNKFVKFVSNDEK--------------E 42

Query: 69  FLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L++          FW F +E + ++ I  N  FD  F+     +         +  + +
Sbjct: 43  MLEN----------FWKFISEHEISKLIGFNINFDWTFLKLRSMKYGIKIRYFKKYEERV 92

Query: 128 SIARRK--HPSSRNDLNSLCKR 147
            + R     P ++  L   C R
Sbjct: 93  DLRRILNSEPRAKGTLTDYCVR 114


>gi|171059394|ref|YP_001791743.1| exonuclease I [Leptothrix cholodnii SP-6]
 gi|170776839|gb|ACB34978.1| Exodeoxyribonuclease I [Leptothrix cholodnii SP-6]
          Length = 484

 Score = 65.2 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 66/228 (28%), Gaps = 30/228 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G   ++DR  +   +   LD ++ +        P       PE+  L GI  +  
Sbjct: 10  DYETFGRSPRSDRPAQFAGIRTDLDLNEIDAPLMQHCQPAPDYLPDPESCLLTGIVPQTC 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L+      +      D         + +N+ +FD         R   DP           
Sbjct: 70  LELGVPEHTFADAIEDQLARPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREWQNECGR 129

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              +D +       P                L  L    GI  SH   H AL D      
Sbjct: 130 WDLLDVVRCCYALRPDGIQWPRHDDGRPSFKLEHLTAANGI--SHEGAHDALSDVRAT-I 186

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
              +++       F F        +++   +  I   +R    F  I+
Sbjct: 187 ALARLIKNARPKLFDF----CLRLRKKDAVLAEIEGAQRQGRPFLHIS 230


>gi|283456597|ref|YP_003361161.1| DNA polymerase III [Bifidobacterium dentium Bd1]
 gi|283103231|gb|ADB10337.1| DNA polymerase III [Bifidobacterium dentium Bd1]
          Length = 525

 Score = 65.2 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 71/194 (36%), Gaps = 42/194 (21%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYS------------------KTNRTF-----QVFL 48
            DIETTG D     II++G  E ++                     T   +        +
Sbjct: 298 VDIETTGTDPARTYIIDVGF-EFMNMMSPRPADAPAEYRYEQSSYVTGDAYGQARLSFGV 356

Query: 49  CPNGRKNSPE-ALKLHGITDEFLKDKPSFSSIFSE----FWDFFNEQNAEWIAHNAKFDV 103
            P       +  L+L GI    L   P     +            +Q   ++AHNA+F+ 
Sbjct: 357 TPENAAVGNDLILRLTGIDVRDLAGGPRLFDEWPAAQIGLLQRLEQQ--PYVAHNARFEH 414

Query: 104 GFINAELQRINKDPLDPS-RIIDTLSIARR---------KHPSSRNDLNSLCKRYG-ITI 152
           GF    +    +     +  IIDTL ++RR         +HP   N L S  KR G +  
Sbjct: 415 GFFMLNIAGYAESYRAGNITIIDTLPMSRRWDDGSIPDDEHPYGDNTLESYAKRQGALDS 474

Query: 153 SHRSKHGALLDSHL 166
           S   +H  L D+H+
Sbjct: 475 SKSERHLGLEDAHI 488


>gi|239907643|ref|YP_002954384.1| hypothetical protein DMR_30070 [Desulfovibrio magneticus RS-1]
 gi|239797509|dbj|BAH76498.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 179

 Score = 65.2 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 33/181 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNR--TFQVFLCPNGRKNSPEALK 61
           M  +V D ET G       ++ + A+++    +  K +R  TF     P  + N P A  
Sbjct: 1   MTGLVIDFETNGF--YRSSVLSVAAIKIDVDWNLKKVDRLDTFVRHYHPVEKWN-PHAQA 57

Query: 62  LHGITD---EFLKDKPSFSSIFSE---FWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           ++G++    E L+    + + F +     +F +E     +AHNAKFD  F N ++     
Sbjct: 58  VNGLSAKKIERLRTSAEYPAYFKDDHGLTNFASEAVFA-VAHNAKFDSSFANLQI----- 111

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                   I T+ +           L    +  GI +     H AL D+ +  D++  ++
Sbjct: 112 ------PWICTMKLCG-------GKLADAARLRGIVVKQSQLHEALYDAEVCLDLFTLLV 158

Query: 176 V 176
            
Sbjct: 159 R 159


>gi|317505660|ref|ZP_07963563.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM 15606]
 gi|315663245|gb|EFV03009.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM 15606]
          Length = 901

 Score = 65.2 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 14/165 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK--LHGITD 67
           +FD ETTGLD  +D I++I AV+L + +        ++L     K  PE L   ++ I +
Sbjct: 509 IFDTETTGLDVFSDDILQIAAVQLKNGAVVLGSAMSIYL--ESDKEIPEMLGDIVNPIIE 566

Query: 68  EFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSR 122
           E    +  S       F D+   Q    + HNA FD+  +   L R            + 
Sbjct: 567 ERRHHQLISRQDALQRFVDY--AQGTVLLGHNADFDIHILTNNLLRELPECPLPENLNNY 624

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           +   L I   +    +  L  L +   + +   + H A  D +  
Sbjct: 625 LDSLLLIRLLRPGLRQYKLKYLLEV--LHLEGENSHLADADVNAT 667


>gi|240274899|gb|EER38414.1| RNA exonuclease [Ajellomyces capsulatus H143]
          Length = 465

 Score = 65.2 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D E  G+    DR   +  V +++Y+   + +  F+ P           + G++ 
Sbjct: 57  RYVALDCEMVGVGPNPDRDSALARVSIVNYNG-EQVYDSFVLPKEEVTDWR-THVSGVSP 114

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + D   F  +  +     +      + H  + D+  +      +   P    R     
Sbjct: 115 KHMTDAREFEVVQRDVAGILD--GCILVGHAVRNDLDAL------LLSHPKHDIRDTSKH 166

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I   + H ++ D+     ++ +
Sbjct: 167 PPYRKIAGGGSPRLKILASELLGLEI-QGAAHSSIEDAQATMLLFRR 212


>gi|256080860|ref|XP_002576694.1| rex4-related (xpmc2) [Schistosoma mansoni]
 gi|238661973|emb|CAZ32931.1| rex4-related (xpmc2) [Schistosoma mansoni]
          Length = 751

 Score = 65.2 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 20/170 (11%)

Query: 8   RKIVFDIE--TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R+I  D E    G + K+D +  +  V    ++  +     ++ P  R       K+ GI
Sbjct: 494 RRIAMDCEFVGVGFEGKDDALARVSIVNQFGHTLLD----TYVRPEERVVDYR-TKVSGI 548

Query: 66  TDEFLKD---KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
               L+       F+ +  E  +    +N   + H+   D+  +     R         R
Sbjct: 549 RPRDLRKNGSARPFNDVHKEVAELI--KNKILVGHSILKDLKVLRLSHPRRFIRDTSRYR 606

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVY 171
                   R         L +L ++  G+ +     H ++ D+     +Y
Sbjct: 607 PF------RDLFNGRIPSLKALTQKVLGVNVQSGE-HDSIEDARATMRLY 649


>gi|327271053|ref|XP_003220302.1| PREDICTED: ERI1 exoribonuclease 3-like [Anolis carolinensis]
          Length = 229

 Score = 64.9 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 63/183 (34%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGR- 53
           M      R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 27  MSSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHS 86

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
           + +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 87  QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPSVKSIFVT-CGDWDLKVM 145

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  + Q +     D  +    L  A         +N L  + K  G+ + H    H  + 
Sbjct: 146 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGSWPKNGLLDMNK--GLNLQHIGRPHSGID 203

Query: 163 DSH 165
           D  
Sbjct: 204 DCK 206


>gi|157962308|ref|YP_001502342.1| exonuclease I [Shewanella pealeana ATCC 700345]
 gi|157847308|gb|ABV87807.1| Exodeoxyribonuclease I [Shewanella pealeana ATCC 700345]
          Length = 470

 Score = 64.9 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 64/182 (35%), Gaps = 27/182 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLHGITDEF- 69
           D ET G +   DR  +   V            + F C   N    SPEA+ + GIT +  
Sbjct: 13  DYETFGANPAKDRPSQFAGVRTDMDLNIIGEPETFYCKLANDYLPSPEAILITGITPQLA 72

Query: 70  -LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSR 122
            LK  P  +    +    F++     + +N+ +FD      GF    +    ++  + + 
Sbjct: 73  NLKGMP-EAEFMDKINSLFSQPKTCVVGYNSLRFDDEVSRYGFYRNFIDPYAREWQNGNS 131

Query: 123 IIDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             D + + R  +               S    L  L    G  +SH   H A+ D +   
Sbjct: 132 RWDIIDLVRACYAFRPEGINWPEKEDGSPSFKLEQLTVANG--LSHEKAHDAMSDVYATI 189

Query: 169 DV 170
           D+
Sbjct: 190 DM 191


>gi|115400665|ref|XP_001215921.1| RNA exonuclease 4 [Aspergillus terreus NIH2624]
 gi|114191587|gb|EAU33287.1| RNA exonuclease 4 [Aspergillus terreus NIH2624]
          Length = 510

 Score = 64.9 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 55/167 (32%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G+    D    +  V +++++   + +  F+ P           + GI  
Sbjct: 118 KYVAMDCEMVGVGPNPDHDSALARVSIVNFNG-EQVYDSFVRPKEMVTDWR-THVSGILP 175

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + +  +   +  E  +  + +    + H  + D+  +      +   P    R     
Sbjct: 176 RHMAEARTLEQVQKEVAEIIDGR--ILVGHALRNDLDAL------LLSHPKRDIRDTSKY 227

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I     H ++ D+     +Y +
Sbjct: 228 PPYRKVAGGGSPRLKVLASEFLGLDI-QGGAHSSVEDAKATMLLYRR 273


>gi|322505025|emb|CAM42259.2| putative phosphotransferase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 575

 Score = 64.9 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 24/222 (10%)

Query: 9   KIVFDIETT---GLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKN-SPEALKLH 63
            IV D+E T   G    +  +IE   V +   + T    FQ ++ P      S    +L 
Sbjct: 52  YIVLDLEATCEAGRRITDAEVIEFPMVLVDPRTATQVAEFQRYVRPVKNPMLSRFCTELT 111

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQN--------AEWIAHNAKFDVGFINAELQRI-- 113
           GIT   +  +  F  ++ E   F  E          +  +     +D+  +     RI  
Sbjct: 112 GITQNMVSHRDPFPVVYCEALQFLAEAGLGDAPPLRSYCVVTCGDWDLKTMLPSQIRISG 171

Query: 114 -NKDPLDPSRIIDTLSIARRK------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
               PL   R  +                    D+  + +  G+    R  H  + D   
Sbjct: 172 QQGTPLSFQRWCNLKKYMSGLGLRDGGERGGPTDMPDMLRILGLPHQGR-HHSGIDDCRN 230

Query: 167 LSDVYIKMMVGGSQINFGFKTNE-DRFFKEEKKTVPNISLLK 207
           ++ V   ++  G  ++  F T   +R+    +  +P +  L+
Sbjct: 231 IAAVLCALLKRGLVVDTTFATEPFERWHAPAEAQLPALQELR 272


>gi|297519534|ref|ZP_06937920.1| exonuclease I [Escherichia coli OP50]
          Length = 213

 Score = 64.9 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   + ++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|225575600|ref|ZP_03784210.1| hypothetical protein RUMHYD_03692 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037194|gb|EEG47440.1| hypothetical protein RUMHYD_03692 [Blautia hydrogenotrophica DSM
           10507]
          Length = 319

 Score = 64.9 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 62/194 (31%), Gaps = 42/194 (21%)

Query: 7   MRKIVFDIETTGLDSKND-----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK- 54
           M  IV D+E    +   D            IIEIGAV+L    +    F   + P   K 
Sbjct: 1   MNYIVMDLE---WNQCPDGKEYANEKLPFEIIEIGAVKLNQNKEIVGRFHEIIRPQVYKW 57

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA------ 108
              +  ++  +    L +  SFS+   +F  +  E            D  F         
Sbjct: 58  IHAKTREVVHLNYRNLANGKSFSAAVQDFLVWCGE------------DYRFCTWGTQDLL 105

Query: 109 ------ELQRINKDPLDPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGA 160
                    +I +    P R  D   +    +   SSR  L    +   I       H A
Sbjct: 106 ELQKNMRYYQILESLPGPIRYYDVQKLFSIAYEDRSSRRALEYAIEYLNIE-KKYKFHRA 164

Query: 161 LLDSHLLSDVYIKM 174
             D++  ++V  K+
Sbjct: 165 QSDAYYTAEVLQKI 178


>gi|308448868|ref|XP_003087777.1| hypothetical protein CRE_06261 [Caenorhabditis remanei]
 gi|308252714|gb|EFO96666.1| hypothetical protein CRE_06261 [Caenorhabditis remanei]
          Length = 233

 Score = 64.9 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 90/232 (38%), Gaps = 37/232 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKT---NRTFQVFLCPNGRKNSPEALK 61
           M+ I+ D ET    + N   IEI    +++ +   +    + F         K S  ++ 
Sbjct: 1   MQAIILDTET---HTLNGLPIEIAYAPIQIQEGKLSLDREQMFDQLYSIGNEKISFGSMA 57

Query: 62  LHGITDEFLKDKPSFSSI-FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +H I +  L  +P+FSS    +   +        I HN  +D+  I    QR   D    
Sbjct: 58  VHHILESDLVGQPNFSSFELPQHTQYI-------IGHNIDYDIQAI----QRCGVDTTHI 106

Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSK-------HGALLDSHLLSDVYI 172
            + I TL++AR   P +  +++++L   Y I+             H A  D  L +++ +
Sbjct: 107 -KAICTLALARLVWPDAEAHNISALI--YMISKGSEKAREMLKGAHRADADIILTANILM 163

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPN-ISLLKRDKPLFTRITKEELDE 223
            ++          ++ E+ +   E   +P  I+  K        + K+ +  
Sbjct: 164 HIVY-----QLKIQSIEELYEASEDARIPRSINFGKHRGTAIAELPKDYVQW 210


>gi|238917958|ref|YP_002931475.1| sporulation inhibitor KapD [Eubacterium eligens ATCC 27750]
 gi|238873318|gb|ACR73028.1| sporulation inhibitor KapD [Eubacterium eligens ATCC 27750]
          Length = 324

 Score = 64.9 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 66/181 (36%), Gaps = 16/181 (8%)

Query: 7   MRKIVFDIE----TTGLDSKND----RIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSP 57
           M  IV D+E      G     D     II+IGA ++ +       +Q  + P    K   
Sbjct: 3   MNYIVMDLEWNQSAKGKQFSEDHFPFEIIQIGAAKVNEKLDIVDEWQCTIKPQVYTKLQN 62

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              K+ GIT+  L +   F S  +EF ++  + +  ++      D+  +   ++  +   
Sbjct: 63  TVRKILGITENDLANGTDFVSGVTEFLEWCGD-DYTFVTW-GSMDITELRRNMKFYDVPE 120

Query: 118 LDPSR--IIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             P     +D   +        +   +L S     GI       H A+ D+   + +  K
Sbjct: 121 NFPKPLLYLDLQKLYSINFSDGKTRMNLKSAIDEQGIK-GDEHYHSAMSDARYTAKIMKK 179

Query: 174 M 174
           +
Sbjct: 180 L 180


>gi|229553558|ref|ZP_04442283.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus LMS2-1]
 gi|258538698|ref|YP_003173197.1| DNA polymerase III subunit alpha [Lactobacillus rhamnosus Lc 705]
 gi|229313183|gb|EEN79156.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus LMS2-1]
 gi|257150374|emb|CAR89346.1| DNA polymerase III, alpha subunit (Gram-positive type)
           [Lactobacillus rhamnosus Lc 705]
          Length = 471

 Score = 64.9 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 70/183 (38%), Gaps = 26/183 (14%)

Query: 9   KIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEALKLHGI 65
            +V D E     +  +++   EI  + +  + + ++TF +F   P G    P ++K+ GI
Sbjct: 275 YVVIDTE---FVADRNQLDLTEISLLRIRQH-QIDQTFDIFTQLPAGHHVMPFSVKITGI 330

Query: 66  TDEFLKDK----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           TD+ L+      P   +   +       Q+   +      D+  I + L       + P 
Sbjct: 331 TDDLLEKYGQPLPLVKTALQQLL-----QHELVVGFALSNDLRAIESGLA----IKVAPL 381

Query: 122 RIIDTLSIARRKHP-SSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +  D   +AR+      ++   L    +  GI +     H AL D+     +   ++  G
Sbjct: 382 QAFDAAVLARKTFGIGKKHTPSLQHYKEALGIDLP---SHTALSDAKTTMALLEHLIWQG 438

Query: 179 SQI 181
             +
Sbjct: 439 HPL 441


>gi|50955256|ref|YP_062544.1| DNA polymerase III, epsilon subunit [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50951738|gb|AAT89439.1| DNA polymerase III, epsilon subunit [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 192

 Score = 64.9 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 11/153 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHGIT 66
               D ET   +S       +G V++ D    +R+    + P    +      +++HG+ 
Sbjct: 5   FTAIDFET--ANSSAASACSVGLVKVRDGRVVDRSG-WLIQPPAGHDEFHEWNVRIHGVH 61

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              +   P ++   ++  +F   ++   +AHNA FD+G I A      +      R + +
Sbjct: 62  PADIAGAPGWADQLADLVEFC--EDDALVAHNAGFDMGVIRAACAAT-RIACPDYRYLCS 118

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
           L +ARR        L +     G        H 
Sbjct: 119 LQVARRTC-LESYRLPAAALAAG--FEDFHHHD 148


>gi|302185096|ref|ZP_07261769.1| exonuclease [Pseudomonas syringae pv. syringae 642]
          Length = 180

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 66/172 (38%), Gaps = 10/172 (5%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E T    G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINKD-PLDP 120
            I    +      ++++ +F  + +   A  +   +   +D   +  E +  + D  L  
Sbjct: 64  HINQSSIDSAAPLTTVWPQFERWLSHHRARIVGWASWGDYDRQQLEEEWRHHHLDSALSG 123

Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              I+     A+ +       LNS  +  G+  S +  H AL+D+   + + 
Sbjct: 124 MPHINLKQRFAQARQLQKPMGLNSALQLAGMQFSGQQ-HRALVDARNTARLL 174


>gi|115650166|ref|XP_781221.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 210

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 10/119 (8%)

Query: 9   KIVFDIETTGLDSKN---DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64
            +V D E T LD++      +IE   +++   + +T  TF  ++ P          +L G
Sbjct: 79  FLVLDFEATCLDNERIEPQEVIEFPVLKVSGKTFETEATFHQYVEPQVHGVGEFCTRLTG 138

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           IT + +K +P+F+     F  +  ++           +V FI       +   + PS+ 
Sbjct: 139 ITPDMVKGQPTFADTLKLFHVWMEKEGLV------DPEVKFIFVTCGDWDLKTMFPSQC 191


>gi|307104722|gb|EFN52974.1| hypothetical protein CHLNCDRAFT_26251 [Chlorella variabilis]
          Length = 194

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 24/165 (14%)

Query: 25  RIIEIGAVELLDYSKTN--RTFQVFLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFS 81
            IIE+  V +     T     FQ ++ P+     S    +L GIT   +       +   
Sbjct: 1   EIIELSCVVVDTARTTVLPVHFQRYVRPDQHPCLSDFCTELTGITQAMVDGGVPLHTALQ 60

Query: 82  EFWDFFNEQNAEW--------------IAHNAK-FDVGF---INAELQRINKDPLDPSRI 123
           +   +  +Q                       + +D+     +  + +RI + P    R 
Sbjct: 61  DLDAWLRQQGLIGQVGGRCCSSRRCFSCCSTWRDWDLKVQMQMECKWRRIEQ-PRWQKRW 119

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           ID +     KH   + +L + C+   +    R  H A+ D+   +
Sbjct: 120 ID-IGAVWFKHSGKKGNLRASCEAAELGWDGR-AHSAIDDARNTA 162


>gi|254471445|ref|ZP_05084847.1| exonuclease [Pseudovibrio sp. JE062]
 gi|211959591|gb|EEA94789.1| exonuclease [Pseudovibrio sp. JE062]
          Length = 248

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 63/192 (32%), Gaps = 29/192 (15%)

Query: 10  IVFDIE--T---------TG-LDSKNDRIIEIGAVEL--LDYSKTNRTFQVFLCPNGR-- 53
           +VFD E  T          G  D     I +IGAV+L      +   T +V + P  R  
Sbjct: 41  VVFDCEFLTSEGAQRRFWCGPFDPDP-VIAQIGAVKLSLEGSFELIDTIKVHINPVDRYG 99

Query: 54  ---KNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
              K  P   KL GIT E +  +  S   +  +   F     A   +     ++  +   
Sbjct: 100 DSYKLDPFFSKLTGITQEMIDSEGISLQEVNEQLNAF--ADGATLWSWGKD-ELNMMAIS 156

Query: 110 LQRINKDPLDPSRIID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
                  P  P+   D      L+         R   N L   + +       H AL D+
Sbjct: 157 CYIAGIQPSIPAHQFDNACKLMLAAGMPYEDIKRTRSNDLADYFELEHPPLRGHDALDDA 216

Query: 165 HLLSDVYIKMMV 176
             ++ V   ++ 
Sbjct: 217 LSVAYVIQHLLR 228


>gi|242078557|ref|XP_002444047.1| hypothetical protein SORBIDRAFT_07g006360 [Sorghum bicolor]
 gi|241940397|gb|EES13542.1| hypothetical protein SORBIDRAFT_07g006360 [Sorghum bicolor]
          Length = 287

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 22/216 (10%)

Query: 9   KIVFDIETT---GLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRK-NSPEALKL 62
            +V D E T   G       IIE  +V L+D    +T  TF+ ++ P      +     L
Sbjct: 5   FVVIDFEATCQEGSVIYPQEIIEFPSV-LVDGATGRTLSTFRTYVRPRHHPRLTDFCRDL 63

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINAELQRINKDPL 118
            GIT   +    S +        +     A+     +     +D   +     R     +
Sbjct: 64  TGITQGDVDAGVSLAEALEMHDHWLEAHGAKLGKLAVVTWGDWDCRTMLEGECRFKG--I 121

Query: 119 DPSRIIDTLSIARRKHPSS------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +     D     R    ++      R  L    ++ G+    R  H  L D+   + + +
Sbjct: 122 EKPHYFDHWINLRLPFSAAFGVGNVRFTLQDAIRKAGLQWEGR-LHCGLDDALNTAHLLV 180

Query: 173 KMMVGGS--QINFGFKTNEDRFFKEEKKTVPNISLL 206
           ++M  G+  +I       +     + K  +P +   
Sbjct: 181 ELMRRGTLLKITASLAPTQSPPRPQPKAALPCVGPR 216


>gi|119486168|ref|ZP_01620228.1| hypothetical protein L8106_17532 [Lyngbya sp. PCC 8106]
 gi|119456659|gb|EAW37788.1| hypothetical protein L8106_17532 [Lyngbya sp. PCC 8106]
          Length = 818

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 37/176 (21%)

Query: 9   KIVFDIETTGLDSKNDRII-EIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEALKLHGI 65
            IV D E          I+ EI  V+          ++ +    PN  K SP+       
Sbjct: 7   FIVIDTE-------GQPILREIAIVDYQGKLI----YEAWADNHPNNPKISPKT------ 49

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                       +I ++F DF + +    I H A+ D+  +    + +   P        
Sbjct: 50  --------KPLKTIITDFLDFAHSK--TIICHYARHDIEVLRNSFRAVGI-PTPHLVFEC 98

Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGIT-----ISHRSKHGALLDSHLLSDVYIKMM 175
           +  +A++  P    + L +L K   +       ++ S H A  D+     +Y +M+
Sbjct: 99  SFELAQQHLPELGSHSLEALSKHLNLKSEGKIFNNDSAHRAKYDALFTYQLYRRMV 154


>gi|170094696|ref|XP_001878569.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647023|gb|EDR11268.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 284

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 15/108 (13%)

Query: 1   MIRKNKMRKIVFDIETT---GLDSKN-DRIIE--IGAVELLDY--------SKTNRTFQV 46
           M R+     +V DIE T   G D    + IIE  +  +   +          +    F+ 
Sbjct: 32  MTRQPYEVFLVLDIEGTCDQGTDFNYPNEIIEFPVCLMRWKNRTDDDFCSELEVVDEFRT 91

Query: 47  FLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE 93
           ++ P  R   S    +L GIT   + D P F  +  +   F  +    
Sbjct: 92  YVKPKWRPTLSKFCTELTGITQAQVDDAPLFPDVLVDLEKFLAKHGLI 139


>gi|269963670|ref|ZP_06177992.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831582|gb|EEZ85719.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 176

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 67/178 (37%), Gaps = 8/178 (4%)

Query: 4   KNKMRKIVFDIETTGLD----SKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE 58
            N  R + FD+E    +     +   IIE+G  E+ L   +  +  Q ++ P   + S  
Sbjct: 1   MNHNRIVCFDLEMCCWNENGVGRTGEIIEVGLAEIDLSKGEIVKRAQYYVKPEHDEVSLF 60

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             +L GIT   + K       +       F  +N  + +   + D+  +    Q+    P
Sbjct: 61  CAELTGITPRKIEKQGRPLEEVLKSMLKNFGGRNKIYASW-GRDDLILLEECQQKGIDAP 119

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 + TL   + +    R    +  +  GI    R  H   +D++ L+ + + M+
Sbjct: 120 FTEFINLATLYRIQNRLKEKRIGHRAAQEAKGIEWEGRQ-HSGYVDAYNLAKLALTML 176


>gi|320641419|gb|EFX10863.1| exonuclease I [Escherichia coli O157:H7 str. G5101]
          Length = 475

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 59/192 (30%), Gaps = 27/192 (14%)

Query: 1   MIRKNKMRKIVF--DIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +      D ET G     DR  +  A+   D ++        +  P       
Sbjct: 1   MMNDGKQQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|117624215|ref|YP_853128.1| exonuclease I [Escherichia coli APEC O1]
 gi|115513339|gb|ABJ01414.1| exonuclease I [Escherichia coli APEC O1]
          Length = 491

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   + ++        +  P       
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 76

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 194

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 195 NAHDAMADVYAT 206


>gi|239606272|gb|EEQ83259.1| exonuclease [Ajellomyces dermatitidis ER-3]
          Length = 323

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 59/167 (35%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D E  G+    DR   +  V +++Y+   + +  F+ P           + G+++
Sbjct: 124 KYIAIDCEMVGVGPNPDRDSALARVSIVNYNG-EQVYDSFVRPKEAVTDWR-THISGVSE 181

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + D   F  +  +     +      I H  + D+  +      +   P    R     
Sbjct: 182 KHMADAREFEVVQKDVAGILD--GCILIGHAVRNDLDAL------LLSHPKRDIRDTSKH 233

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              RR    S   L  L  +  G+ I   + H ++ D+     ++ +
Sbjct: 234 PPYRRIAGGSSPRLKILASELLGLEI-QGAAHSSVEDAQATMLLFRR 279


>gi|261188692|ref|XP_002620760.1| exonuclease [Ajellomyces dermatitidis SLH14081]
 gi|239593118|gb|EEQ75699.1| exonuclease [Ajellomyces dermatitidis SLH14081]
 gi|327355949|gb|EGE84806.1| exonuclease [Ajellomyces dermatitidis ATCC 18188]
          Length = 323

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 59/167 (35%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D E  G+    DR   +  V +++Y+   + +  F+ P           + G+++
Sbjct: 124 KYIAIDCEMVGVGPNPDRDSALARVSIVNYNG-EQVYDSFVRPKEAVTDWR-THISGVSE 181

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + D   F  +  +     +      I H  + D+  +      +   P    R     
Sbjct: 182 KHMADAREFEVVQKDVAGILD--GCILIGHAVRNDLDAL------LLSHPKRDIRDTSKH 233

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              RR    S   L  L  +  G+ I   + H ++ D+     ++ +
Sbjct: 234 PPYRRIAGGSSPRLKILASELLGLEI-QGAAHSSVEDAQATMLLFRR 279


>gi|157267360|ref|NP_288516.2| exonuclease I [Escherichia coli O157:H7 str. EDL933]
 gi|169822936|gb|AAG57070.2|AE005426_12 exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase
           [Escherichia coli O157:H7 str. EDL933]
          Length = 475

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   D ++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|300816639|ref|ZP_07096860.1| exonuclease [Escherichia coli MS 107-1]
 gi|300530869|gb|EFK51931.1| exonuclease [Escherichia coli MS 107-1]
          Length = 475

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   D ++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQETRAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|260855993|ref|YP_003229884.1| exonuclease I [Escherichia coli O26:H11 str. 11368]
 gi|257754642|dbj|BAI26144.1| exonuclease I [Escherichia coli O26:H11 str. 11368]
 gi|323152400|gb|EFZ38688.1| exodeoxyribonuclease I [Escherichia coli EPECa14]
          Length = 475

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   D ++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQETRAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|256022296|ref|ZP_05436161.1| exonuclease I [Escherichia sp. 4_1_40B]
 gi|301329562|ref|ZP_07222343.1| exonuclease [Escherichia coli MS 78-1]
 gi|300844319|gb|EFK72079.1| exonuclease [Escherichia coli MS 78-1]
          Length = 474

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 59/191 (30%), Gaps = 26/191 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS-P 57
           M   +K    +  D ET G     DR  +  A+   + ++        +  P       P
Sbjct: 1   MTGTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQP 60

Query: 58  EALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINK 115
            A+ + GIT +  + K  + ++  +     F   +      +N +FD         R   
Sbjct: 61  GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  GI   H +
Sbjct: 121 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSN 178

Query: 157 KHGALLDSHLL 167
            H A+ D +  
Sbjct: 179 AHDAMADVYAT 189


>gi|171742298|ref|ZP_02918105.1| hypothetical protein BIFDEN_01404 [Bifidobacterium dentium ATCC
           27678]
 gi|171277912|gb|EDT45573.1| hypothetical protein BIFDEN_01404 [Bifidobacterium dentium ATCC
           27678]
          Length = 586

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 71/194 (36%), Gaps = 42/194 (21%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYS------------------KTNRTF-----QVFL 48
            DIETTG D     II++G  E ++                     T   +        +
Sbjct: 359 VDIETTGTDPARTYIIDVGF-EFMNMMSPRPADAPAEYRYEQSSYVTGDAYGQARLSFGV 417

Query: 49  CPNGRKNSPE-ALKLHGITDEFLKDKPSFSSIFSE----FWDFFNEQNAEWIAHNAKFDV 103
            P       +  L+L GI    L   P     +            +Q   ++AHNA+F+ 
Sbjct: 418 TPENAAVGNDLILRLTGIDVRDLAGGPRLFDEWPAAQIGLLQRLEQQ--PYVAHNARFEH 475

Query: 104 GFINAELQRINKDPLDPS-RIIDTLSIARR---------KHPSSRNDLNSLCKRYG-ITI 152
           GF    +    +     +  IIDTL ++RR         +HP   N L S  KR G +  
Sbjct: 476 GFFMLNIAGYAESYRAGNITIIDTLPMSRRWDDGSIPDDEHPYGDNTLESYAKRQGALDS 535

Query: 153 SHRSKHGALLDSHL 166
           S   +H  L D+H+
Sbjct: 536 SKSERHLGLEDAHI 549


>gi|301787433|ref|XP_002929126.1| PREDICTED: three prime repair exonuclease 2-like [Ailuropoda
           melanoleuca]
          Length = 236

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 31/195 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQ------------VFLCPNGRK 54
            +  D+E TGL S +  + EI   AV        ++                      R 
Sbjct: 10  FVFLDLEATGLPSIDPEVAEISLFAVHRSSLENPDQDESGAPVLPRVLDKLTLCMSPERP 69

Query: 55  NSPEALKLHGITDEFL---KDKPSFSSIFSEFWDFFNEQNAE--WIAHN-AKFDVGFINA 108
            + +A ++ G++ + L   +     +++      F + Q      +AHN   +D   +  
Sbjct: 70  FTAKASEITGLSSDSLARCRKAGFDNAVVRTLEAFLSRQEGPICLVAHNGFDYDFPLLCT 129

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKH 158
           EL+R+       +  +DTL   R    +  +           L SL +RY       + H
Sbjct: 130 ELRRLGAHLPPDTICLDTLPALRSLDRAHSHGTRAQGCKGYSLGSLFRRY-FQAEPSAAH 188

Query: 159 GALLDSHLLSDVYIK 173
            A  D H L  V++ 
Sbjct: 189 SAEGDVHTLLMVFLH 203


>gi|253773058|ref|YP_003035889.1| exonuclease I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162000|ref|YP_003045108.1| exonuclease I [Escherichia coli B str. REL606]
 gi|300930717|ref|ZP_07146095.1| exonuclease [Escherichia coli MS 187-1]
 gi|242377657|emb|CAQ32417.1| exonuclease I, 3'--> 5' specific; deoxyribophosphodiesterase
           [Escherichia coli BL21(DE3)]
 gi|253324102|gb|ACT28704.1| Exodeoxyribonuclease I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973901|gb|ACT39572.1| exonuclease I [Escherichia coli B str. REL606]
 gi|253978095|gb|ACT43765.1| exonuclease I [Escherichia coli BL21(DE3)]
 gi|300461438|gb|EFK24931.1| exonuclease [Escherichia coli MS 187-1]
          Length = 475

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   + ++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|168751661|ref|ZP_02776683.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4113]
 gi|168757555|ref|ZP_02782562.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4401]
 gi|168769762|ref|ZP_02794769.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4486]
 gi|168775542|ref|ZP_02800549.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4196]
 gi|168782293|ref|ZP_02807300.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4076]
 gi|168788678|ref|ZP_02813685.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC869]
 gi|168799108|ref|ZP_02824115.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC508]
 gi|195939352|ref|ZP_03084734.1| exonuclease I [Escherichia coli O157:H7 str. EC4024]
 gi|208807658|ref|ZP_03249995.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4206]
 gi|208817101|ref|ZP_03258193.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4045]
 gi|208818353|ref|ZP_03258673.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4042]
 gi|209398513|ref|YP_002271254.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4115]
 gi|254793793|ref|YP_003078630.1| exonuclease I [Escherichia coli O157:H7 str. TW14359]
 gi|261225144|ref|ZP_05939425.1| exonuclease I [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257512|ref|ZP_05950045.1| exonuclease I [Escherichia coli O157:H7 str. FRIK966]
 gi|187768997|gb|EDU32841.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4196]
 gi|188014326|gb|EDU52448.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4113]
 gi|189000162|gb|EDU69148.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4076]
 gi|189355495|gb|EDU73914.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4401]
 gi|189361232|gb|EDU79651.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4486]
 gi|189371612|gb|EDU90028.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC869]
 gi|189378492|gb|EDU96908.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC508]
 gi|208727459|gb|EDZ77060.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4206]
 gi|208730720|gb|EDZ79410.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4045]
 gi|208738476|gb|EDZ86158.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4042]
 gi|209159913|gb|ACI37346.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4115]
 gi|254593193|gb|ACT72554.1| exonuclease I [Escherichia coli O157:H7 str. TW14359]
 gi|320191824|gb|EFW66472.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC1212]
          Length = 474

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 59/191 (30%), Gaps = 26/191 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS-P 57
           M   +K    +  D ET G     DR  +  A+   D ++        +  P       P
Sbjct: 1   MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQP 60

Query: 58  EALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINK 115
            A+ + GIT +  + K  + ++  +     F   +      +N +FD         R   
Sbjct: 61  GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  GI   H +
Sbjct: 121 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSN 178

Query: 157 KHGALLDSHLL 167
            H A+ D +  
Sbjct: 179 AHDAMADVYAT 189


>gi|300956271|ref|ZP_07168577.1| exonuclease [Escherichia coli MS 175-1]
 gi|300316894|gb|EFJ66678.1| exonuclease [Escherichia coli MS 175-1]
          Length = 491

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   D ++        +  P       
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 76

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 194

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 195 NAHDAMADVYAT 206


>gi|290474872|ref|YP_003467752.1| Exonuclease [Xenorhabdus bovienii SS-2004]
 gi|289174185|emb|CBJ80974.1| Exonuclease [Xenorhabdus bovienii SS-2004]
          Length = 186

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 75/189 (39%), Gaps = 20/189 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +RK+++  I  D+ET+G       ++ IGA  +           + L P+  ++ PE+L 
Sbjct: 1   MRKSEV-YISVDVETSGPVPGVFSLLSIGACLVHQAEV---AIYLELQPDSPEHDPESLA 56

Query: 62  LHGITDEFLK-DKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRINK 115
           + G+    L+ D    S+   +F  +        Q A ++  N  FD  FIN    +   
Sbjct: 57  VTGLDLMQLEQDGLPPSAAMHQFKVWIESVIDPGQKAIFVGLNTPFDWSFINYYFYKYVG 116

Query: 116 DPLDPSRIIDTLSIARRKH-----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                   ID  +     +      +  + ++++ K        +  H AL D+   +++
Sbjct: 117 INPFGFTAIDIKAYFMGAYGYSWSETKSSHMSAILK-----PCTKPNHNALEDARFQAEL 171

Query: 171 YIKMMVGGS 179
           +  M+   +
Sbjct: 172 FALMLARQT 180


>gi|72387361|ref|XP_844105.1| exonuclease [Trypanosoma brucei TREU927]
 gi|62360613|gb|AAX81024.1| exonuclease, putative [Trypanosoma brucei]
 gi|70800637|gb|AAZ10546.1| exonuclease, putative [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
          Length = 291

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 73/239 (30%), Gaps = 67/239 (28%)

Query: 3   RKNKMR--------KIVFDIETT------GLDSKNDRIIEIGAVELLDYSK--TNRTFQV 46
           RKNK R         +V D E T      GL      IIE   V  +D ++      F  
Sbjct: 13  RKNKPRGRPQPFSHLLVCDFEATCDADSAGLYP--HEIIEFPVV-CIDTAQLAVVAEFHS 69

Query: 47  FLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI---------- 95
           ++ P  R   +    +L GIT   + D P+   +  +F  +  E                
Sbjct: 70  YVHPVRRPKLTAFCKELTGITQSVVDDAPTLPEVIQKFGQWVREVVYPLCKMWKQQYPPS 129

Query: 96  --AHNAKFDVGFINAELQRINKD----------------------------------PLD 119
             A N   D+G      ++ NK+                                  P  
Sbjct: 130 QLASNCLGDLGKKFKYDEKDNKEWVGCERMVCFATDGPWDMRKFMHECSVVRDGHIFPPL 189

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             R +D     ++        L  + +   +    +  H  + DS  ++ + I++M  G
Sbjct: 190 FYRWVDVRKCFKQHFNKWPRKLVDMLRTLRLDFEGKQ-HSGIDDSRNIARILIELMRRG 247


>gi|307245526|ref|ZP_07527613.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307254482|ref|ZP_07536318.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258940|ref|ZP_07540671.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306853585|gb|EFM85803.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306862532|gb|EFM94490.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866964|gb|EFM98821.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 514

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 76/222 (34%), Gaps = 28/222 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEA 59
           + KN +    +D E+ G+    DR  +   +    D++        +         SPEA
Sbjct: 1   MNKN-LTFFFYDYESFGVGPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEA 59

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQR 112
           + + GIT +    +        +     F++ N   + +N  ++D       F       
Sbjct: 60  VMVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDP 119

Query: 113 INKDPLDPSRIIDTLSIARRKH---PSS-----------RNDLNSLCKRYGITISHRSKH 158
                 + +   D L + R  +   P                L +L K  GI  +H + H
Sbjct: 120 YEYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGI--AHENAH 177

Query: 159 GALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A+ D +    + +  ++   Q        E+R  KE +K +
Sbjct: 178 DAMADVYAT--IAMAKLIKQKQPKLFQFFFENRGKKEIEKMI 217


>gi|195431874|ref|XP_002063953.1| GK15944 [Drosophila willistoni]
 gi|194160038|gb|EDW74939.1| GK15944 [Drosophila willistoni]
          Length = 281

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 63/197 (31%), Gaps = 28/197 (14%)

Query: 10  IVFDIETTG------LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           I  D E T          +   IIE    +  L   K    F  ++ P    + S    +
Sbjct: 66  IAVDFEATCWEKQAPPQWREAEIIEFPAVLVNLKTGKVEAEFHKYIMPIESPRLSSYCTE 125

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAHN-AKFD 102
           L GI  + + +     +    F ++  ++                  N  ++      F 
Sbjct: 126 LTGIQQKTVDNGIPLQTALMMFHEWLRKELRARNLVLPKMSKSNILGNCAFVTWTDWDFG 185

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           +       ++  +  +  ++ ID  +I R  +     + +      G+    R  H  + 
Sbjct: 186 ICLAKECSRKRMRKAVYFNQWIDVRAIYREWYKYRPCNFSDALAHVGLAFEGR-AHSGID 244

Query: 163 DSHLLSDVYIKMMVGGS 179
           D+  L  +  KM+  G+
Sbjct: 245 DAKNLGSLTCKMVRDGA 261


>gi|331647660|ref|ZP_08348752.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli M605]
 gi|331043384|gb|EGI15522.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli M605]
          Length = 491

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   + ++        +  P       
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 76

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 194

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 195 NAHDAMADVYAT 206


>gi|121607268|ref|YP_995075.1| exonuclease I [Verminephrobacter eiseniae EF01-2]
 gi|121551908|gb|ABM56057.1| Exodeoxyribonuclease I subunit C [Verminephrobacter eiseniae
           EF01-2]
          Length = 481

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 66/212 (31%), Gaps = 30/212 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFL 70
           D ET G D++ DR  +  A+    +         +   P N     P +  L GIT +  
Sbjct: 10  DYETFGTDTRCDRPAQFAAIRTDAELHAIGEPLMLHCQPANDYLPDPASCLLTGITPQHC 69

Query: 71  -KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
                      +             + +N  +FD       F    +    ++  +    
Sbjct: 70  CAHGLPEHQFAARIEAELARPGTIGVGYNTLRFDDEITRFMFWRNLIDPYAREWKNQCGR 129

Query: 124 IDTLSIARRKH---PSSRN------------DLNSLCKRYGITISHRSKHGALLDSHLLS 168
            D L + R  +   P   +             L  LC+  G+   H + H AL D     
Sbjct: 130 WDLLDVVRMTYALRPDGIHWPRHEDGAAPSFRLEDLCRANGLL--HEAAHDALSDVRAT- 186

Query: 169 DVYIKMMVGGSQINFGFKTN---EDRFFKEEK 197
               +++   ++  F F      +DR   E +
Sbjct: 187 IALARLIRQHNRPLFDFALGLHKKDRVAAELR 218


>gi|321471838|gb|EFX82810.1| hypothetical protein DAPPUDRAFT_195366 [Daphnia pulex]
          Length = 228

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 6/89 (6%)

Query: 8   RKIVFDIETTGLDSKN----DRIIEIGAVELL-DYSKTNRTFQVFLCPNGRK-NSPEALK 61
           R +V D E T    +       IIE   + +  +  +T  TF  ++ P      +P    
Sbjct: 36  RLLVLDFEATCDSQRGTIRPQEIIEFPVLNVETNGFETVGTFHRYVKPQVHPTLTPFCTS 95

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ 90
           L GI  + ++D      +  +F  +   Q
Sbjct: 96  LTGIIQDMVEDAAPLKEVMEDFHKWLLSQ 124


>gi|301648514|ref|ZP_07248238.1| exonuclease [Escherichia coli MS 146-1]
 gi|301073417|gb|EFK88223.1| exonuclease [Escherichia coli MS 146-1]
          Length = 491

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   + ++        +  P       
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 76

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 194

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 195 NAHDAMADVYAT 206


>gi|74312553|ref|YP_310972.1| exonuclease I [Shigella sonnei Ss046]
 gi|73856030|gb|AAZ88737.1| deoxyribophosphodiesterase [Shigella sonnei Ss046]
          Length = 475

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   + ++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|320175604|gb|EFW50697.1| Exodeoxyribonuclease I [Shigella dysenteriae CDC 74-1112]
          Length = 475

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   D ++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|188495966|ref|ZP_03003236.1| exodeoxyribonuclease I [Escherichia coli 53638]
 gi|188491165|gb|EDU66268.1| exodeoxyribonuclease I [Escherichia coli 53638]
          Length = 475

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   D ++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|170726402|ref|YP_001760428.1| exonuclease I [Shewanella woodyi ATCC 51908]
 gi|169811749|gb|ACA86333.1| Exodeoxyribonuclease I [Shewanella woodyi ATCC 51908]
          Length = 470

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 29/183 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNR--TFQVFLCPNGRKNSPEALKLHGITDEF 69
           D ET G +   DR  +   +    D +      TF   +  +    SPEA+ + GIT + 
Sbjct: 13  DYETFGANPAKDRPSQFAGIRTDFDLNIIGEPETFYCKVANDYLP-SPEAILITGITPQL 71

Query: 70  --LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPS 121
             LK  P  +    +    F++ N     +N+ +FD      GF         ++    +
Sbjct: 72  ANLKGVP-EAEFMGKVHALFSQPNTCVAGYNSIRFDDEVSRYGFYRNFYDPYAREWQQGN 130

Query: 122 RIIDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              D + + R  +               S    L  L +  G  +SH   H A+ D +  
Sbjct: 131 SRWDIIDLVRACYAFRPEGIEWPLKEDGSPSFKLEHLTQANG--LSHEKAHDAMSDVYAT 188

Query: 168 SDV 170
            D+
Sbjct: 189 IDM 191


>gi|15832067|ref|NP_310840.1| exonuclease I [Escherichia coli O157:H7 str. Sakai]
 gi|168764097|ref|ZP_02789104.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4501]
 gi|217329517|ref|ZP_03445596.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. TW14588]
 gi|291283248|ref|YP_003500066.1| Exonuclease I [Escherichia coli O55:H7 str. CB9615]
 gi|13362281|dbj|BAB36236.1| exonuclease I [Escherichia coli O157:H7 str. Sakai]
 gi|189365832|gb|EDU84248.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4501]
 gi|217317285|gb|EEC25714.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. TW14588]
 gi|226237418|dbj|BAH46940.1| exonuclease I [Escherichia coli O55:H7]
 gi|290763121|gb|ADD57082.1| Exonuclease I [Escherichia coli O55:H7 str. CB9615]
 gi|320646788|gb|EFX15665.1| exonuclease I [Escherichia coli O157:H- str. 493-89]
 gi|320652067|gb|EFX20410.1| exonuclease I [Escherichia coli O157:H- str. H 2687]
 gi|320657429|gb|EFX25227.1| exonuclease I [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663245|gb|EFX30550.1| exonuclease I [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668145|gb|EFX35014.1| exonuclease I [Escherichia coli O157:H7 str. LSU-61]
 gi|326338368|gb|EGD62196.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. 1044]
 gi|326347111|gb|EGD70844.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. 1125]
          Length = 475

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   D ++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|218699399|ref|YP_002407028.1| exonuclease I [Escherichia coli IAI39]
 gi|306814865|ref|ZP_07449027.1| exonuclease I [Escherichia coli NC101]
 gi|218369385|emb|CAR17142.1| exonuclease I [Escherichia coli IAI39]
 gi|305852259|gb|EFM52711.1| exonuclease I [Escherichia coli NC101]
 gi|323187688|gb|EFZ72989.1| exodeoxyribonuclease I [Escherichia coli RN587/1]
 gi|324008954|gb|EGB78173.1| exonuclease [Escherichia coli MS 57-2]
          Length = 475

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   + ++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|215487234|ref|YP_002329665.1| exonuclease I [Escherichia coli O127:H6 str. E2348/69]
 gi|312967244|ref|ZP_07781460.1| exodeoxyribonuclease I [Escherichia coli 2362-75]
 gi|215265306|emb|CAS09701.1| exonuclease I [Escherichia coli O127:H6 str. E2348/69]
 gi|312288052|gb|EFR15956.1| exodeoxyribonuclease I [Escherichia coli 2362-75]
          Length = 475

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   + ++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|148826847|ref|YP_001291600.1| exonuclease I [Haemophilus influenzae PittGG]
 gi|148718089|gb|ABQ99216.1| exodeoxyribonuclease I [Haemophilus influenzae PittGG]
          Length = 473

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 66/184 (35%), Gaps = 33/184 (17%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE 68
           ++D E+ G++   DR  +   +    D++        +          PEA+ + GIT +
Sbjct: 9   IYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGITPQ 68

Query: 69  FLKDK----PSFSS-IFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122
              +K    P FS+ I +EF    ++ N   + +N  ++D         R   DP + S 
Sbjct: 69  ECNEKGLSEPEFSANILAEF----SQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSW 124

Query: 123 I--------IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLD 163
                    +D +       P   N            L  L K  GI   H + H A+ D
Sbjct: 125 KNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIE--HENAHDAMAD 182

Query: 164 SHLL 167
            +  
Sbjct: 183 VYAT 186


>gi|309702335|emb|CBJ01657.1| exodeoxyribonuclease I [Escherichia coli ETEC H10407]
          Length = 475

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   D ++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|209526687|ref|ZP_03275211.1| Exonuclease RNase T and DNA polymerase III [Arthrospira maxima
           CS-328]
 gi|209492923|gb|EDZ93254.1| Exonuclease RNase T and DNA polymerase III [Arthrospira maxima
           CS-328]
          Length = 853

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 66/184 (35%), Gaps = 35/184 (19%)

Query: 1   MIR----KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           MIR     N    IV D E        + + E+  V+          +Q F+     KN 
Sbjct: 1   MIRDNYHLNTSSFIVLDTE------GKNSLTEVAMVDNQGAI----CYQAFV----AKNH 46

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           PE          F  +  +   I  +  +  + Q    I H+A+ D   +    +++   
Sbjct: 47  PEPT--------FRLNIATLLDIVKQVDNLCHNQ--VIICHHAEHDQRILERSFEQVAI- 95

Query: 117 PLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITI-----SHRSKHGALLDSHLLSDV 170
           P    + I T  +A+++ P+     L+ LCK   + +       R  H A  D+     +
Sbjct: 96  PYPNYQFICTCKLAKQQLPNLPDYGLSYLCKTLDLRLNGDRFDDRYAHRASYDAQFTYKL 155

Query: 171 YIKM 174
           Y  +
Sbjct: 156 YRYL 159


>gi|330911851|gb|EGH40361.1| exodeoxyribonuclease 1 [Escherichia coli AA86]
          Length = 475

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   + ++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|284922012|emb|CBG35090.1| exodeoxyribonuclease I [Escherichia coli 042]
          Length = 491

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 61/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   + ++   +    +  P       
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGKPEVFYCKPADDYLPQ 76

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 194

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 195 NAHDAMADVYAT 206


>gi|290996841|ref|XP_002680990.1| predicted protein [Naegleria gruberi]
 gi|284094613|gb|EFC48246.1| predicted protein [Naegleria gruberi]
          Length = 175

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 23/151 (15%)

Query: 39  KTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98
           +T       + P+    +  A +L GIT E   D   F+       +F    +   IAHN
Sbjct: 4   ETGEYVSSLVKPSC-PITMNARQLTGITSELFSDCLEFNQHIQRIKEFIGNDDVLLIAHN 62

Query: 99  -AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-----------------D 140
             KFD   +       N    +   ++D+L +  + +                       
Sbjct: 63  GKKFDERVLKYHFTD-NLSQFENCTLVDSLQMITKFNDDLPTVTRFSKKQQKLVEKKDKK 121

Query: 141 LNSLCKR-YGITISHRSKHGALLDSHLLSDV 170
           L S+ K  +G  I     H AL D   L+ +
Sbjct: 122 LVSIYKHIFGSEIED--AHFALSDVKALALI 150


>gi|327253143|gb|EGE64797.1| exodeoxyribonuclease I [Escherichia coli STEC_7v]
          Length = 475

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   + ++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|224058011|ref|XP_002190758.1| PREDICTED: prion protein interacting protein [Taeniopygia guttata]
          Length = 271

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M      R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 69  MSSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 128

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 129 QLTPFCTELTGIIQGMVDGQPSLQQVLERVDEWMAKEGLLDPSVKSIFVT-CGDWDLKVM 187

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  + Q +     D  +    L  A         +N L  + K  G+ + H    H  + 
Sbjct: 188 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGSWPKNGLLDMNK--GLNLQHIGRPHSGID 245

Query: 163 DSH 165
           D  
Sbjct: 246 DCK 248


>gi|254508126|ref|ZP_05120252.1| exonuclease KapD [Vibrio parahaemolyticus 16]
 gi|219548961|gb|EED25960.1| exonuclease KapD [Vibrio parahaemolyticus 16]
          Length = 164

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 14/164 (8%)

Query: 16  TTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL-KD 72
           TTG       IIE+G   ++L+      R  Q ++ P   + S   ++L GIT   + K 
Sbjct: 11  TTG------EIIEVGLAEIDLVKGEIVKRA-QYYVKPEQDEVSLFCVELTGITPRKVEKQ 63

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSIAR 131
                 +       F   N  + +     D   +  E +    + P      + TL   +
Sbjct: 64  GRPLEEVLKSVVKNFGGSNKIFAS--WGRDDVVLAKECEAKGIEMPFKEFINLATLYRIQ 121

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +    R    +  +  GI    R  H A +D++ L+ + + M+
Sbjct: 122 NRLKDKRIGHRAAQESKGIEWEGRQ-HSAYVDAYNLAKLALTML 164


>gi|118094519|ref|XP_422418.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 265

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 21/183 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M      R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 63  MSSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 122

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 123 QLTPFCTELTGIIQGMVDGQPSLQQVLERVDEWMAKEGLLDPSVKSIFVT-CGDWDLKVM 181

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALL 162
           +  + Q +     D  +    L  A         +N L  + K  G+ + H    H  + 
Sbjct: 182 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGSWPKNGLLDMNK--GLNLQHIGRPHSGID 239

Query: 163 DSH 165
           D  
Sbjct: 240 DCK 242


>gi|407653|gb|AAD12336.1| unknown [Mycoplasma genitalium]
          Length = 76

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 90  QNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHP-SSRNDLNSLCKR 147
            +   +AHN   FD+ F+  + ++ N  PL  + +IDTL ++   +P  S + L+++C +
Sbjct: 2   DDCVMVAHNGINFDLPFLQTQFEKYNIKPL-TNPLIDTLCLSWALNPLFSSHTLSNICSK 60

Query: 148 YGITISHRSKHGALLD 163
             +       H A  D
Sbjct: 61  LKLEFDDERLHRAEYD 76


>gi|330876090|gb|EGH10239.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|330964631|gb|EGH64891.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 180

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 10/172 (5%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E T    G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCKELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRIN-KDPLDP 120
            I    +      ++++ +F  + +   A  +   +   +D   +  E +       L  
Sbjct: 64  HINQSNIDSAAPLTTVWPQFERWLSHHRARVVGWASWGDYDRQQLEEEWRHHQLGSALSS 123

Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              ++     A+ +       LNS  +  G+  S +  H AL+D+   + + 
Sbjct: 124 MPHVNLKQRFAQARQLQKPVGLNSALQLAGMQFSGQQ-HRALVDARNTARLL 174


>gi|332306455|ref|YP_004434306.1| Exodeoxyribonuclease I [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173784|gb|AEE23038.1| Exodeoxyribonuclease I [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 476

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 59/178 (33%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVF-LCPNGRKNSPEALKLHGITDEF- 69
           D ET G++ + D   +   +   LD +  ++   +F   PN     P+A  + GIT +  
Sbjct: 10  DYETWGVNPQKDPACQFAGIRTDLDLNIISQPLMIFNQIPNDYLPHPQACLITGITPQHS 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L+D         +    F++       +N  +FD       L R   DP +         
Sbjct: 70  LRDGMIEPEFIEKIHHEFSQAETCVAGYNNIRFDDEVTRYTLYRNFYDPYEREWRNGNSR 129

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              ID +       P                L  L K   I   H + H A+ D +  
Sbjct: 130 WDIIDVVRACYALRPDGIEWPLKEDGSPSFKLEDLSKANNIE--HSAAHDAMSDVYAT 185


>gi|213409417|ref|XP_002175479.1| 3'-5' exonuclease eri-1 [Schizosaccharomyces japonicus yFS275]
 gi|212003526|gb|EEB09186.1| 3'-5' exonuclease eri-1 [Schizosaccharomyces japonicus yFS275]
          Length = 311

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 76/210 (36%), Gaps = 43/210 (20%)

Query: 6   KMRKI-VFDIETT-----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSP 57
           K+R + V D+E T     G     + IIE    +  L+  +    F  ++ P      S 
Sbjct: 61  KLRYLLVVDVEATCEEGCGFSYM-NEIIEFPCLLYDLEQKRIIDEFHTYVKPRRIPTLSN 119

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-----------------AHNAK 100
              +L  I  + + + P F ++     +F ++ + + I                 A++ +
Sbjct: 120 YCKELTKIPQKLIDNAPPFKTVLDLLHEFLSKHDDKLIPPVNGPNTFEWSRLPKTAYHFR 179

Query: 101 ------------FDV-GFINAEL---QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSL 144
                       +D+  F+  E    +  N         +D  S+       S++++N++
Sbjct: 180 SQKNWAWACDGPWDMASFVAKEFATTEENNPPSWINGPFVDVRSLFSDAFRVSKSNINAM 239

Query: 145 CKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             R+ +T   +  H  L D+  L  V   M
Sbjct: 240 LSRWNLTFEGQE-HNGLDDARNLVRVIQHM 268


>gi|170682338|ref|YP_001743128.1| exonuclease I [Escherichia coli SMS-3-5]
 gi|301019172|ref|ZP_07183372.1| exonuclease [Escherichia coli MS 69-1]
 gi|170520056|gb|ACB18234.1| exodeoxyribonuclease I [Escherichia coli SMS-3-5]
 gi|300399365|gb|EFJ82903.1| exonuclease [Escherichia coli MS 69-1]
          Length = 475

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   + ++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|255948230|ref|XP_002564882.1| Pc22g08700 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591899|emb|CAP98158.1| Pc22g08700 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 292

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G+    D    +  V +++++  ++ +  ++ P           + GI  
Sbjct: 98  KYVAMDCEMVGVGPNPDSDSALARVSIVNFNG-DQVYDSYVRPKEMVTDWR-THVSGIAP 155

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +  S   +  E  D   ++    + H    D+  +      +   P    R     
Sbjct: 156 KHMVEARSLEHVQKEVADIMKDR--VLVGHAVSNDLDAL------LLGHPKRDIRDTSKH 207

Query: 128 SIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIK 173
           +  R+        L  L + + GI I     H ++ D+     +Y +
Sbjct: 208 APYRKIAGGGSPRLKILAEEFLGIKI-QEGAHSSVEDARATMALYRR 253


>gi|333002524|gb|EGK22085.1| exodeoxyribonuclease I [Shigella flexneri VA-6]
          Length = 474

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 59/191 (30%), Gaps = 26/191 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS-P 57
           M   +K    +  D ET G     DR  +  A+   D ++        +  P       P
Sbjct: 1   MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRP 60

Query: 58  EALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINK 115
            A+ + GIT +  + K  + ++  +     F   +      +N +FD         R   
Sbjct: 61  GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  GI   H +
Sbjct: 121 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSN 178

Query: 157 KHGALLDSHLL 167
            H A+ D +  
Sbjct: 179 AHDAMADVYAT 189


>gi|300926502|ref|ZP_07142295.1| exonuclease [Escherichia coli MS 182-1]
 gi|300417463|gb|EFK00774.1| exonuclease [Escherichia coli MS 182-1]
          Length = 499

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 25  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 84

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     FN  +      +N +FD         R  
Sbjct: 85  PGAVLITGITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNF 144

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 145 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 202

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 203 NAHDAMADVYAT 214


>gi|268578591|ref|XP_002644278.1| Hypothetical protein CBG14050 [Caenorhabditis briggsae]
          Length = 212

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 72/189 (38%), Gaps = 25/189 (13%)

Query: 10  IVFDIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65
           ++ D ETT    K+D    +I+   V  LD       F  F+ P      S       GI
Sbjct: 12  LILDFETTSDGEKHDYPFEVIQFSVV-PLDVKLEGIAFNKFVRPVVNPILSNYCADFTGI 70

Query: 66  TDEFLKDKPSFSSIFSEFWDFF---------------NEQNAEWIAHNAKFDVGFINAEL 110
             EFL    +F  ++ +F ++                + Q+   IA   ++    +   +
Sbjct: 71  KQEFLNAADTFLVVYKQFLEWLQKNGFQERKLAIVCDSSQDMWRIA---QYQFRLVRETM 127

Query: 111 QRINKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             + +  ++  R  D  L   ++     ++++  +    GI +S +  H AL D   ++ 
Sbjct: 128 PSMFRQWINIKRTFDDGLEDGQKNKLVGKSNIEKMSSYLGIELSGK-AHDALSDCLNIAA 186

Query: 170 VYIKMMVGG 178
           +  K++  G
Sbjct: 187 ITQKILEIG 195


>gi|70989671|ref|XP_749685.1| exonuclease [Aspergillus fumigatus Af293]
 gi|74668965|sp|Q4WHF8|REXO4_ASPFU RecName: Full=RNA exonuclease 4
 gi|66847316|gb|EAL87647.1| exonuclease, putative [Aspergillus fumigatus Af293]
          Length = 310

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 56/167 (33%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G+    D    +  V +++++   + +  ++ P           + GI+ 
Sbjct: 115 KYVAMDCEMVGVGPNPDNDSALARVSIVNFNG-EQVYDSYVRPKEMITDWR-THVSGISP 172

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +  S   +  +  +  + +    + H    D+  +      +   P    R     
Sbjct: 173 KHMAEARSLEQVQKDVAEILDGR--ILVGHAVSNDLDAL------LLGHPKRDIRDTSKH 224

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I     H ++ D+     +Y +
Sbjct: 225 PPYRKIAGGGSPRLKILASEFLGLNI-QDGAHSSVEDAKATMLLYRR 270


>gi|323951765|gb|EGB47639.1| exonuclease [Escherichia coli H252]
          Length = 474

 Score = 64.1 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 25/187 (13%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS-PEALK 61
           K +   +  D ET G     DR  +  A+   + ++        +  P       P A+ 
Sbjct: 5   KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVL 64

Query: 62  LHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + GIT +  + K  + ++  +     F   +      +N +FD         R   DP  
Sbjct: 65  ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYA 124

Query: 120 PSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGA 160
            S          +D +       P                L  L K  GI   H + H A
Sbjct: 125 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSNAHDA 182

Query: 161 LLDSHLL 167
           + D +  
Sbjct: 183 MADVYAT 189


>gi|296815406|ref|XP_002848040.1| RNA exonuclease 4 [Arthroderma otae CBS 113480]
 gi|238841065|gb|EEQ30727.1| RNA exonuclease 4 [Arthroderma otae CBS 113480]
          Length = 308

 Score = 64.1 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 63/167 (37%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D E  G+    D+   +  V +++Y+  ++ +  ++ P        +  + GI  
Sbjct: 116 KYIAIDCEMVGVGPDPDKDSALARVSIVNYNG-DQVYDSYVRPKEMVTDWRSS-VSGILP 173

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +  S  ++  +     + +    I H  + D+  +   L    +D  D SR     
Sbjct: 174 KHMVEARSLETVQRDVAKLLDNR--ILIGHAVRNDLDALL--LSHSKRDIRDTSRY---- 225

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I   S H ++ D+     ++ +
Sbjct: 226 PPYRKFAGGGSPKLKVLASELLGLEI-QGSAHSSVEDARATMMLFRR 271


>gi|24113393|ref|NP_707903.1| exonuclease I [Shigella flexneri 2a str. 301]
 gi|30063460|ref|NP_837631.1| exonuclease I [Shigella flexneri 2a str. 2457T]
 gi|24052413|gb|AAN43610.1| exonuclease I, 3 --> 5 specific; deoxyribophosphodiesterase
           [Shigella flexneri 2a str. 301]
 gi|30041713|gb|AAP17440.1| exonuclease I, 3 --> 5 specific; deoxyribophosphodiesterase
           [Shigella flexneri 2a str. 2457T]
 gi|281601461|gb|ADA74445.1| deoxyribophosphodiesterase [Shigella flexneri 2002017]
 gi|313649951|gb|EFS14371.1| exodeoxyribonuclease I [Shigella flexneri 2a str. 2457T]
 gi|332756645|gb|EGJ86994.1| exodeoxyribonuclease I [Shigella flexneri K-671]
 gi|332756922|gb|EGJ87267.1| exodeoxyribonuclease I [Shigella flexneri 2747-71]
 gi|332766358|gb|EGJ96567.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
           [Shigella flexneri 2930-71]
 gi|333002384|gb|EGK21946.1| exodeoxyribonuclease I [Shigella flexneri K-218]
 gi|333017067|gb|EGK36388.1| exodeoxyribonuclease I [Shigella flexneri K-304]
          Length = 474

 Score = 64.1 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 60/191 (31%), Gaps = 26/191 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS-P 57
           M   +K    +  D ET G     DR  +  A+   D ++        +  P       P
Sbjct: 1   MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRP 60

Query: 58  EALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINK 115
            A+ + GIT +  + K  + ++  +     F   +      +N +FD         R   
Sbjct: 61  GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRS 156
           DP   S          +D +       P   N            L  L K  GI   H +
Sbjct: 121 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSN 178

Query: 157 KHGALLDSHLL 167
            H A+ D +  
Sbjct: 179 AHDAMADVYAT 189


>gi|269138522|ref|YP_003295222.1| exonuclease I [Edwardsiella tarda EIB202]
 gi|267984182|gb|ACY84011.1| exonuclease I [Edwardsiella tarda EIB202]
          Length = 477

 Score = 64.1 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 57/193 (29%), Gaps = 28/193 (14%)

Query: 1   MIRKNK---MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKN 55
           M  KN+      +  D ET G     DR  +   V            QVF C   +    
Sbjct: 1   MTVKNRSIQNTFLFHDYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRLADDYLP 60

Query: 56  SPEALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI 113
            P+A+ + GIT +  L      +         F+      + +N  +FD         R 
Sbjct: 61  QPDAVMITGITPQTALAQGGCEAEFAERIHQMFSVPGTCVVGYNNIRFDDEVSRNLFYRN 120

Query: 114 NKDP--------------LDPSRIIDTLSIARRKHPS-----SRNDLNSLCKRYGITISH 154
             DP              LD  R    L       P          L  L +  GI   H
Sbjct: 121 FFDPYAYSWQNGNSRWDLLDVVRTCYALRHEGIVWPENEQGLPSFKLEHLSQANGIE--H 178

Query: 155 RSKHGALLDSHLL 167
            + H A+ D +  
Sbjct: 179 SNAHDAMADVYAT 191


>gi|324016993|gb|EGB86212.1| exonuclease [Escherichia coli MS 117-3]
          Length = 499

 Score = 64.1 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   + ++        +  P       
Sbjct: 25  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 84

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 85  PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 144

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 145 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 202

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 203 NAHDAMADVYAT 214


>gi|260868731|ref|YP_003235133.1| exonuclease I [Escherichia coli O111:H- str. 11128]
 gi|257765087|dbj|BAI36582.1| exonuclease I [Escherichia coli O111:H- str. 11128]
 gi|323177088|gb|EFZ62678.1| exodeoxyribonuclease I [Escherichia coli 1180]
          Length = 474

 Score = 64.1 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 59/191 (30%), Gaps = 26/191 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS-P 57
           M   +K    +  D ET G     DR  +  A+   + ++        +  P       P
Sbjct: 1   MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQP 60

Query: 58  EALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINK 115
            A+ + GIT +  + K  + ++  +     F   +      +N +FD         R   
Sbjct: 61  GAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  GI   H +
Sbjct: 121 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSN 178

Query: 157 KHGALLDSHLL 167
            H A+ D +  
Sbjct: 179 AHDAMADVYAT 189


>gi|46447255|ref|YP_008620.1| hypothetical protein pc1621 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400896|emb|CAF24345.1| unknown protein [Candidatus Protochlamydia amoebophila UWE25]
          Length = 193

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 23/177 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG---RKNSPEALKL 62
           M  I  DIE++GLDS + R +EI   V  +   +   T+Q  +        K    ++++
Sbjct: 1   MLAIFLDIESSGLDSFHHRALEIAFKVIDVRTGEERLTYQSIVKQPLEVWEKRDLASIEI 60

Query: 63  HGITDEFL----KDKPSFSSIFSEFWDF-FNEQNAEWIAHNAKFDVGF---INAELQRIN 114
           +G T E L    ++    S I   F D       A +I  N  FD GF   I     +  
Sbjct: 61  NGFTWEKLLLGQEEAVVKSEIVQIFNDLKIQRGRAVYICQNPAFDRGFFSQIVDVYTQEK 120

Query: 115 KDPLDPSRIIDTLSIARR-KHPSSRN---------DLNSLCKRYGITISHRSKHGAL 161
                      ++  A + K  + ++           N++ + +G+ I   S H AL
Sbjct: 121 YHWPYHWLDFASMYWALQFKFYTQKHEHFPLEINLSKNTIAQHFGLPIES-SPHNAL 176


>gi|193071491|ref|ZP_03052403.1| exodeoxyribonuclease I [Escherichia coli E110019]
 gi|192955213|gb|EDV85704.1| exodeoxyribonuclease I [Escherichia coli E110019]
          Length = 475

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   D ++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|261327263|emb|CBH10239.1| exonuclease, putative [Trypanosoma brucei gambiense DAL972]
          Length = 329

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 71/239 (29%), Gaps = 67/239 (28%)

Query: 3   RKNKMR--------KIVFDIETT------GLDSKNDRIIEIGAVELLDYSK--TNRTFQV 46
           RKNK R         +V D E T      GL      IIE   V  +D ++      F  
Sbjct: 51  RKNKPRGRPQPFSHLLVCDFEATCDADSAGLYP--HEIIEFPVV-CIDTAQLAVVAEFHS 107

Query: 47  FLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI---------- 95
           ++ P  R   +    +L GIT   + D P+   +  +F  +  E                
Sbjct: 108 YVHPVRRPKLTAFCKELTGITQSVVDDAPTLPEVIQKFGQWVREVVYPLCKMWKQQYPPS 167

Query: 96  --AHNAKFDV--------------------------------GFINAELQRINKDPLDP- 120
             A N   D+                                 F++      +     P 
Sbjct: 168 QLASNCLGDLEKKFKYDEKDNKEWVGCERMVCFTTDGPWDMRKFMHECSVVRDGHIFPPL 227

Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             R +D     ++        L  + +   +    +  H  + DS  ++ + I++M  G
Sbjct: 228 FYRWVDVRKCFKQHFNKWPRKLVDMLRTLRLDFEGKQ-HSGIDDSRNIARILIELMRRG 285


>gi|110805983|ref|YP_689503.1| exonuclease I [Shigella flexneri 5 str. 8401]
 gi|110615531|gb|ABF04198.1| Exodeoxyribonuclease I [Shigella flexneri 5 str. 8401]
          Length = 474

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 60/191 (31%), Gaps = 26/191 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS-P 57
           M   +K    +  D ET G     DR  +  A+   D ++        +  P       P
Sbjct: 1   MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRP 60

Query: 58  EALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINK 115
            A+ + GIT +  + K  + ++  +     F   +      +N +FD         R   
Sbjct: 61  GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRS 156
           DP   S          +D +       P   N            L  L K  GI   H +
Sbjct: 121 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSN 178

Query: 157 KHGALLDSHLL 167
            H A+ D +  
Sbjct: 179 AHDAMADVYAT 189


>gi|27365643|ref|NP_761171.1| hypothetical protein VV1_2322 [Vibrio vulnificus CMCP6]
 gi|37680205|ref|NP_934814.1| hypothetical protein VV2021 [Vibrio vulnificus YJ016]
 gi|320156044|ref|YP_004188423.1| hypothetical protein VVM_02370 [Vibrio vulnificus MO6-24/O]
 gi|27361791|gb|AAO10698.1| hypothetical protein VV1_2322 [Vibrio vulnificus CMCP6]
 gi|37198952|dbj|BAC94785.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
 gi|319931356|gb|ADV86220.1| hypothetical protein VVMO6_01198 [Vibrio vulnificus MO6-24/O]
          Length = 176

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 10/178 (5%)

Query: 4   KNKMRKIVFDIETTGLD----SKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE 58
            N  R + FD+E    +     +   IIEIG  E+ L   +  +  Q ++ P   + S  
Sbjct: 1   MNHNRIVCFDLEMCCWNEDGVGRTGEIIEIGLAEIDLLKGEIVKRAQYYVKPEHDEVSLF 60

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
             +L GIT   + K     + +       F   N  + +     D   +  E Q    D 
Sbjct: 61  CAELTGITPRKIEKQGRPLAEVIKSMIKNFGGSNKIYAS--WGRDDRILMQECQEKGIDA 118

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           P +    I TL   + +    R    +  +  GI    R  H   +D++ L+ + + M
Sbjct: 119 PFNEFINIATLYRIQHRLKDKRIGHRAAQEAKGIEWEGRQ-HSGYVDAYNLAKLALTM 175


>gi|293395284|ref|ZP_06639569.1| exodeoxyribonuclease I [Serratia odorifera DSM 4582]
 gi|291422241|gb|EFE95485.1| exodeoxyribonuclease I [Serratia odorifera DSM 4582]
          Length = 453

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 58/183 (31%), Gaps = 27/183 (14%)

Query: 24  DRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITD-EFLKDKPSFSSIF 80
           DR  +   V   +D++       ++  P +     PEA+ + GIT  E L      +   
Sbjct: 2   DRPAQFAGVRTDMDFNIIEEPLVIYCAPADDYLPDPEAVMITGITPQEALAKGVCEAEFA 61

Query: 81  SEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--------IDTLSIAR 131
            +    F+      + +N  +FD         R   DP   S          +D +    
Sbjct: 62  RQIHQAFSVPGTCIVGYNNIRFDDEVSRNIFYRSFYDPYAYSWQNGNSRWDLLDVMRACY 121

Query: 132 RKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              P                L  L +  G+  +H   H A+ D H    + +  +V  +Q
Sbjct: 122 ALRPEGIVWPENDDGFPSFRLEHLTRANGV--AHEQAHDAMSDVHAT--IAMAKLVRQAQ 177

Query: 181 INF 183
              
Sbjct: 178 PRL 180


>gi|218554573|ref|YP_002387486.1| exonuclease I [Escherichia coli IAI1]
 gi|218361341|emb|CAQ98929.1| exonuclease I [Escherichia coli IAI1]
          Length = 475

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPVDDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     FN  +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|157155858|ref|YP_001463362.1| exonuclease I [Escherichia coli E24377A]
 gi|157077888|gb|ABV17596.1| exodeoxyribonuclease I [Escherichia coli E24377A]
          Length = 475

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     FN  +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|194756028|ref|XP_001960281.1| GF13284 [Drosophila ananassae]
 gi|190621579|gb|EDV37103.1| GF13284 [Drosophila ananassae]
          Length = 284

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 10  IVFDIETTG------LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           I  D E T          +   IIE    +  L   K    F  ++ P    + S    +
Sbjct: 69  IAVDFEATCWEKQAPPQWREAEIIEFPAVLVNLKTGKIEAEFHKYIMPIESPRLSTYCTE 128

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAHN-AKFD 102
           L GI  + +       +    F ++  ++                  N  ++      F 
Sbjct: 129 LTGIQQKTVDGGVPLQTALMMFHEWLRKELRARNLTLPKMNKSNVLGNCAFVTWTDWDFG 188

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           +       ++  +     ++ ID  +I R  +     + +      G+    R  H  + 
Sbjct: 189 ICLAKECTRKRMRKAAYFNQWIDVRAIYRSWYKYRPCNFSDALSHVGLAFEGR-AHSGID 247

Query: 163 DSHLLSDVYIKMMVGGS 179
           D+  L  +  KM+  G+
Sbjct: 248 DAKNLGALMCKMVSDGA 264


>gi|163752570|ref|ZP_02159753.1| exodeoxyribonuclease I [Shewanella benthica KT99]
 gi|161327543|gb|EDP98744.1| exodeoxyribonuclease I [Shewanella benthica KT99]
          Length = 470

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 81/231 (35%), Gaps = 28/231 (12%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
           D ET G +   DR  +   +   +D +  +     +         SPEA+ + GIT + +
Sbjct: 13  DYETFGANPSKDRPSQFAGIRTDMDLNIVSEPVTFYCKLATDYLPSPEAILITGITPQLV 72

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------DP 120
             K    +   ++  + F++ N     +N+ +FD         R   DP           
Sbjct: 73  NLKGMPETEFMAKVNEQFSQPNTCVAGYNSIRFDDEVTRYGFYRNFIDPYAREWQKGNSR 132

Query: 121 SRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             IID +       P                L  L K  G  +SH   H A+ D +   D
Sbjct: 133 WDIIDLVRACYAFRPEGIEWPLKEDGTPSFKLEHLTKANG--LSHEKAHDAMSDVYATID 190

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           +    ++   Q        + R  +E  K +  +++L     + ++I+ E 
Sbjct: 191 M--AKLIKQKQPKLFDYYFQLRRKQEVSKQLDVLNMLPLVH-VSSKISAEH 238


>gi|331653435|ref|ZP_08354436.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli M718]
 gi|331048284|gb|EGI20360.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli M718]
          Length = 491

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   + ++        +  P       
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 76

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 77  PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 194

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 195 NAHDAMADVYAT 206


>gi|331642634|ref|ZP_08343769.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli H736]
 gi|331039432|gb|EGI11652.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli H736]
          Length = 491

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   + ++        +  P       
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 76

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 77  PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 194

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 195 NAHDAMADVYAT 206


>gi|222033783|emb|CAP76524.1| exodeoxyribonuclease I [Escherichia coli LF82]
 gi|281179112|dbj|BAI55442.1| exonuclease I [Escherichia coli SE15]
 gi|312946641|gb|ADR27468.1| exonuclease I [Escherichia coli O83:H1 str. NRG 857C]
 gi|320193300|gb|EFW67938.1| Exodeoxyribonuclease I [Escherichia coli WV_060327]
          Length = 475

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   + ++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|218695636|ref|YP_002403303.1| exonuclease I [Escherichia coli 55989]
 gi|218352368|emb|CAU98142.1| exonuclease I [Escherichia coli 55989]
          Length = 475

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   + ++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|153831795|ref|ZP_01984462.1| exonuclease KapD [Vibrio harveyi HY01]
 gi|156974798|ref|YP_001445705.1| hypothetical protein VIBHAR_02516 [Vibrio harveyi ATCC BAA-1116]
 gi|148871793|gb|EDL70616.1| exonuclease KapD [Vibrio harveyi HY01]
 gi|156526392|gb|ABU71478.1| hypothetical protein VIBHAR_02516 [Vibrio harveyi ATCC BAA-1116]
          Length = 176

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 8/178 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKN----DRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE 58
            N  R + FD+E    +         IIE+G  E+ L   +  +  Q ++ P   + S  
Sbjct: 1   MNHNRIVCFDLEMCCWNENGVGSTGEIIEVGLAEIDLSKGEIVKRAQYYVKPEHDEVSLF 60

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             +L GIT   + K       +       F  +N  + +   + D+  +    Q+    P
Sbjct: 61  CAELTGITPRKIEKQGRPLEEVLKSMLKNFGGRNKIYASW-GRDDLILLEECQQKGIDAP 119

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 + TL   + +    R    +  +  GI    R  H   +D++ L+ + + M+
Sbjct: 120 FTEFINLATLYRIQNRLKDKRIGHKAAQEAKGIEWEGRQ-HSGYVDAYNLAKLALTML 176


>gi|301050038|ref|ZP_07196952.1| exonuclease [Escherichia coli MS 185-1]
 gi|300298222|gb|EFJ54607.1| exonuclease [Escherichia coli MS 185-1]
          Length = 491

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   + ++        +  P       
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 76

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 77  PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 194

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 195 NAHDAMADVYAT 206


>gi|301170130|emb|CBW29734.1| exonuclease I [Haemophilus influenzae 10810]
          Length = 473

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 25/180 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE 68
           ++D E+ G++   DR  +   +    D++        +          PEA+ + GIT +
Sbjct: 9   IYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGITPQ 68

Query: 69  FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--- 123
              +K  S     +     F++ N   + +N  ++D         R   DP + S     
Sbjct: 69  ECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGN 128

Query: 124 -----IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                +D +       P                L  L K  GI   H + H A+ D +  
Sbjct: 129 SRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIE--HENAHDAMEDVYAT 186


>gi|218690073|ref|YP_002398285.1| exonuclease I [Escherichia coli ED1a]
 gi|218427637|emb|CAR08548.2| exonuclease I [Escherichia coli ED1a]
          Length = 475

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     FN  +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|323968146|gb|EGB63555.1| exonuclease [Escherichia coli M863]
          Length = 474

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 25/187 (13%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS-PEALK 61
           K +   +  D ET G     DR  +  A+   + ++        +  P       P A+ 
Sbjct: 5   KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVL 64

Query: 62  LHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + GIT +  + K  + ++  +     F   +      +N +FD         R   DP  
Sbjct: 65  ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYA 124

Query: 120 PSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGA 160
            S          +D +       P                L  L K  GI   H + H A
Sbjct: 125 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSNAHDA 182

Query: 161 LLDSHLL 167
           + D +  
Sbjct: 183 MADVYAT 189


>gi|307138678|ref|ZP_07498034.1| exonuclease I [Escherichia coli H736]
          Length = 475

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+   + ++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|260550878|ref|ZP_05825084.1| exonuclease [Acinetobacter sp. RUH2624]
 gi|260406005|gb|EEW99491.1| exonuclease [Acinetobacter sp. RUH2624]
          Length = 228

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 94/230 (40%), Gaps = 34/230 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVF--LCPNGRKNSPEALKL 62
           M+ I+ D ET    + N   IEI    +EL     T    ++F  L   G   S  A+ +
Sbjct: 1   MQAIILDTET---HTLNGLPIEIAYAPIELNAGKLTLDKSKLFDQLYQVGAPISYAAMAV 57

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H I +  L+++P     +  F     +     I HN  +D+  I     R   D +   +
Sbjct: 58  HHILESDLENQP----HYKTFK--LPDSTTYIIGHNIDYDIAAI----ARCGVD-VSHIK 106

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISH-------RSKHGALLDSHLLSDVYIKM 174
            I TL++AR+  P +  +++++L   Y I+          +  H A  D  L +++ + +
Sbjct: 107 PICTLALARKAWPDAEAHNISALI--YMISQGSGKAREMLKGAHRADADIILTANILMHI 164

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPN-ISLLKRDKPLFTRITKEELDE 223
           +      +   +  E+ +   E+  +P+ I+  K        + K+ +  
Sbjct: 165 IY-----HLNIQDIEELYQVSEEARIPHTINFGKHKGTAIAELPKDYIQW 209


>gi|159129092|gb|EDP54206.1| exonuclease, putative [Aspergillus fumigatus A1163]
          Length = 311

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 56/169 (33%), Gaps = 16/169 (9%)

Query: 8   RKIVFDIETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + +  D E  G+  + +ND  +   ++   +  +    +  ++ P           + GI
Sbjct: 115 KYVAMDCEMVGVGPNPENDSALARVSIVNFNGEQV---YDSYVRPKEMVTDWR-THVSGI 170

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + + + +  S   +  +  +  + +    + H    D+  +      +   P    R   
Sbjct: 171 SPKHMAEARSLEQVQKDVAEILDGR--ILVGHAVSNDLDAL------LLGHPKRDIRDTS 222

Query: 126 TLSIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
                R+        L  L  +  G+ I     H ++ D+     +Y +
Sbjct: 223 KHPPYRKIAGGGSPRLKILASEFLGLNI-QDGAHSSVEDAKATMLLYRR 270


>gi|259908083|ref|YP_002648439.1| exonuclease I [Erwinia pyrifoliae Ep1/96]
 gi|224963705|emb|CAX55202.1| Exodeoxyribonuclease I [Erwinia pyrifoliae Ep1/96]
 gi|283477982|emb|CAY73898.1| exodeoxyribonuclease I [Erwinia pyrifoliae DSM 12163]
          Length = 475

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 58/178 (32%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G     DR  +  A+   +D++        +  P       PEA+ + GIT +  
Sbjct: 14  DYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMITGITPQIA 73

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           + +  S +         F+  N   + +N  +FD         R   DP   S       
Sbjct: 74  RARGLSEAEFTCRIHQLFSVPNTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWSWQHGNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L K  G+  +H + H A+ D +  
Sbjct: 134 WDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGV--AHENAHDAMSDVYAT 189


>gi|333003504|gb|EGK23045.1| exodeoxyribonuclease I [Shigella flexneri K-272]
 gi|333017330|gb|EGK36648.1| exodeoxyribonuclease I [Shigella flexneri K-227]
          Length = 474

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 60/191 (31%), Gaps = 26/191 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS-P 57
           M   +K    +  D ET G     DR  +  A+   D ++        +  P       P
Sbjct: 1   MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRP 60

Query: 58  EALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINK 115
            A+ + GIT +  + K  + ++  +     F   +      +N +FD         R   
Sbjct: 61  RAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRS 156
           DP   S          +D +       P   N            L  L K  GI   H +
Sbjct: 121 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSN 178

Query: 157 KHGALLDSHLL 167
            H A+ D +  
Sbjct: 179 AHDAMADVYAT 189


>gi|239918445|ref|YP_002958003.1| hypothetical protein Mlut_19710 [Micrococcus luteus NCTC 2665]
 gi|281415356|ref|ZP_06247098.1| hypothetical protein MlutN2_09144 [Micrococcus luteus NCTC 2665]
 gi|239839652|gb|ACS31449.1| hypothetical protein Mlut_19710 [Micrococcus luteus NCTC 2665]
          Length = 308

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 13/213 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-- 58
           M   +++  +  +I T G D  +   +++  V      +     +  + P     S    
Sbjct: 1   MNELDELDFVAVEIHTAGADPASVCAVDMALVR---GGEIVAAERWPVRPPTGPTSFSRL 57

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             +LHG+ +  + D P +  + ++  D   E    ++A  A  D G   A  +     P 
Sbjct: 58  HTQLHGVDEAAVADAPEWPEVAAQ-LDLLGEH-LPFVASGADRDRGAYEAATRATGGTP- 114

Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 D L++  R  P  +   + +  +  GI        GA  ++   ++V + +   
Sbjct: 115 QEHEWRDALALVGRLRPDVAPPRIATAAQALGIPDGGHPA-GAGSEAVRTAEVVLAL--- 170

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
             Q  +G                P I    R +
Sbjct: 171 ARQSGWGTVRRLWSEAAPPAPDEPIIPESLRRR 203


>gi|313239132|emb|CBY14108.1| unnamed protein product [Oikopleura dioica]
          Length = 462

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 18/144 (12%)

Query: 37  YSKTNRTFQVFLCPN-----GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
              + + F+    P       R +      + GI    L  +P  S + +E       Q 
Sbjct: 297 GKLSGKHFKKLYSPPIDRTLDRPSIDLRTWITGIRPGDLDFQPLASQVLAEVRQII--QG 354

Query: 92  AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GI 150
              + H+ + D+  +                + DT    R K    +  L    K +  +
Sbjct: 355 KYLVGHSIEHDLCVLQHFG-------PPEQGVRDTSQFLRWK--GKKISLKKAAKTFLNL 405

Query: 151 TISHRSKHGALLDSHLLSDVYIKM 174
            I  + KH AL D+    ++Y+ +
Sbjct: 406 EI-QKDKHSALEDAKTTMELYLLL 428


>gi|242239639|ref|YP_002987820.1| exonuclease I [Dickeya dadantii Ech703]
 gi|242131696|gb|ACS85998.1| Exodeoxyribonuclease I [Dickeya dadantii Ech703]
          Length = 476

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 58/186 (31%), Gaps = 30/186 (16%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFL 70
           D ET G     DR  +   +    D++       ++  P +     PEA+ + GIT + L
Sbjct: 14  DYETFGKHPAKDRPAQFAGIRTDQDFNVIGEPVVIYCQPADDYLPDPEAVMITGITPQ-L 72

Query: 71  KDKPSFSSI--FSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI---- 123
                   +    +  D F+      + +N  +FD         R   DP   S      
Sbjct: 73  ASSKGIGEVDFARQIHDAFSTPGTCIMGYNNIRFDDEVSRNLFYRNFIDPYAYSWQNGNS 132

Query: 124 ----IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL- 167
               +D L       P                L  L +  GI   H   H A+ D +   
Sbjct: 133 RWDLLDALRACYALRPEGIVWPENEEGFPSFRLEHLTRANGIE--HEHAHDAMSDVYATI 190

Query: 168 --SDVY 171
             + ++
Sbjct: 191 AMARLF 196


>gi|144900367|emb|CAM77231.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 189

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 69/191 (36%), Gaps = 26/191 (13%)

Query: 7   MRKIVF-DIETT---GLDSKN-------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRK- 54
           MR +V  D+E T   G  ++N         I++IGAV L    +      + + P     
Sbjct: 1   MRPVVIYDLEYTSWAGAQARNWSGAGEYREIVQIGAVRLDQDFRELDCLDILVRPRRNPR 60

Query: 55  NSPEALKLHGITDEFLKDKPSFSS-IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
            S    +L GI+   L +    +        DF     +     N   D   +      +
Sbjct: 61  LSDYFTQLTGISQAMLNESAVEAEGALQRLLDFAAPDLSLL--SNGA-DGTVLAENCALL 117

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNS--LCKRYGITISHRSKHGALLDSH--LLSD 169
           + D L   R  D    A     S R  L S  L + +G+  + R  H AL D+     + 
Sbjct: 118 DCDDLFAGRTGDV--HALLLTASGRVRLTSAELPEIFGLPSAGRG-HTALADARNVAAA- 173

Query: 170 VYIKMMVGGSQ 180
             ++++ G  Q
Sbjct: 174 --LRLIAGRDQ 182


>gi|152979065|ref|YP_001344694.1| exonuclease I [Actinobacillus succinogenes 130Z]
 gi|150840788|gb|ABR74759.1| Exodeoxyribonuclease I [Actinobacillus succinogenes 130Z]
          Length = 471

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 63/187 (33%), Gaps = 25/187 (13%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALK 61
            N     ++D E+ G++   DR  +   +    D++       ++    N    SPEA+ 
Sbjct: 1   MNDFSFFIYDYESFGINPATDRPAQFAGIRTDADFNVIGEPVMLYCKQTNDYLPSPEAVL 60

Query: 62  LHGITDEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + GIT +   +K  P      S   +F          +N ++D         R   DP +
Sbjct: 61  VTGITPQECNEKGLPEPEFAASVLAEFSRPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYE 120

Query: 120 PSR-----IIDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGA 160
            S        D L I R  +                    L  L +  GI  +H + H A
Sbjct: 121 YSWKNGNSRWDLLDIVRACYALRPEGIEWAYDDDGMPSFRLERLTEANGI--AHENAHDA 178

Query: 161 LLDSHLL 167
           + D +  
Sbjct: 179 MSDVYAT 185


>gi|71275767|ref|ZP_00652051.1| Exodeoxyribonuclease I [Xylella fastidiosa Dixon]
 gi|71902145|ref|ZP_00684172.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
 gi|170730127|ref|YP_001775560.1| exonuclease I [Xylella fastidiosa M12]
 gi|71163345|gb|EAO13063.1| Exodeoxyribonuclease I [Xylella fastidiosa Dixon]
 gi|71728093|gb|EAO30295.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
 gi|167964920|gb|ACA11930.1| Exodeoxyribonuclease I [Xylella fastidiosa M12]
          Length = 488

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 74/210 (35%), Gaps = 30/210 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            + +D+ET G D +  RI +  AV      +         + P +    SP A  + GIT
Sbjct: 15  FLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGIT 74

Query: 67  DEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR-- 122
            +   ++  S  + F+       + +   + +N  +FD  FI   L R   DP +     
Sbjct: 75  PQHAQREGISEVAAFAHITMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYEREWRN 134

Query: 123 ---IIDTLSIARRKH---PSSRN-----------DLNSLCKRYGITISHR--SKHGALLD 163
                D L + R  H   P   +            L  L     +    R  + H AL D
Sbjct: 135 GNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLA----LANHAREGTAHEALSD 190

Query: 164 SHLLSDVYIKMMVGGSQI-NFGFKTNEDRF 192
            +    +  K      ++ N+  +  + RF
Sbjct: 191 VYATISMARKFRAAQPRLWNYALQLRDKRF 220


>gi|119505890|ref|ZP_01627954.1| Exonuclease [marine gamma proteobacterium HTCC2080]
 gi|119458271|gb|EAW39382.1| Exonuclease [marine gamma proteobacterium HTCC2080]
          Length = 483

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 64/195 (32%), Gaps = 28/195 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITD-EF 69
           D ET+G +   DR ++   V    +++  +     +  P       P A+++ GI+  + 
Sbjct: 11  DYETSGANVFEDRPLQFAGVRTDKNFNVISEPLVHYCRPSPDCLLHPAAIRVTGISPYKA 70

Query: 70  LKDKPSFSSIFSEF-WDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-----DPSR 122
           L +  +  +  ++   +F          +N+ +FD       L R    P          
Sbjct: 71  LAEGANEGAFMAKIQREFMVPGTCAL-GYNSVRFDDEITRFALYRNFFPPYAREFGQNRS 129

Query: 123 IIDTLSIARRKH---PSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             D + +AR  +   P                L  L    GI   H + H AL D     
Sbjct: 130 RWDLIDVARAIYALRPDGIVWPIREDGLPSFRLEDLTAANGID--HGNAHDALADVLAT- 186

Query: 169 DVYIKMMVGGSQINF 183
               K++       F
Sbjct: 187 IALAKLLSKAQPTLF 201


>gi|259508093|ref|ZP_05750993.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
 gi|259164316|gb|EEW48870.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
          Length = 385

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +   I+++G+     R+I   A+ L   ++   TF   L P    + P    LHG+TDE
Sbjct: 56  YVAVTIQSSGIHPSTSRMITFTAITLTADNEPVETFHAVLNPG---SDPGPFHLHGVTDE 112

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +    FS I        + +      HNA    GFI +E +R   D    +R
Sbjct: 113 EFRSARRFSQILKAVDRLIDGRTLIL--HNAPRTWGFIVSEAKRAMNDAARANR 164


>gi|167623714|ref|YP_001674008.1| exonuclease I [Shewanella halifaxensis HAW-EB4]
 gi|167353736|gb|ABZ76349.1| Exodeoxyribonuclease I [Shewanella halifaxensis HAW-EB4]
          Length = 493

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 64/182 (35%), Gaps = 27/182 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLHGITDEF- 69
           D ET G +   DR  +   V            + F C   N    SPEA+ + GIT +  
Sbjct: 36  DYETFGANPAKDRPSQFAGVRTDLDLNIIGEPETFYCKLANDYLPSPEAILITGITPQLA 95

Query: 70  -LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSR 122
            LK  P  +    +    F++     + +N+ +FD      GF    +    ++  + + 
Sbjct: 96  NLKGMP-EAEFMDKINGLFSQPKTCVVGYNSLRFDDEVSRYGFYRNFIDPYAREWQNGNT 154

Query: 123 IIDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             D + + R  +               S    L  L    G  +SH   H A+ D +   
Sbjct: 155 RWDIIDLVRACYAFRPEGINWPEKEDGSPSFKLEQLTVANG--LSHEKAHDAMSDVYATI 212

Query: 169 DV 170
           D+
Sbjct: 213 DM 214


>gi|301603560|ref|XP_002931486.1| PREDICTED: ERI1 exoribonuclease 3 [Xenopus (Silurana) tropicalis]
          Length = 338

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M      R    +V D E T    +     IIE   ++L     +   TF  ++ P    
Sbjct: 119 MTSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHTYVQPVVHP 178

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
             +P   +L GI  + +  +P+ S +     ++  ++ 
Sbjct: 179 QLTPFCTELTGIIQDMVDGQPTLSQVLERVDEWMAKEG 216


>gi|239629477|ref|ZP_04672508.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301065577|ref|YP_003787600.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang]
 gi|239528163|gb|EEQ67164.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300437984|gb|ADK17750.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus casei str. Zhang]
          Length = 470

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 69/189 (36%), Gaps = 26/189 (13%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEA 59
           R  +   IV D E     +  +++   EI  + +  + + +  F +F   P      P +
Sbjct: 269 RLARGDYIVIDTE---FVADRNQLDLTEISLLRVR-HHQVDGAFDIFTQLPEDHHVMPFS 324

Query: 60  LKLHGITDEFLKDK----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           +K+ GITD+ L       P   +   +        +   +      D+  + A L     
Sbjct: 325 VKITGITDDLLSQYGQPLPLAKAAVEQLLK-----HELVVGFALSNDLRALRAGL----N 375

Query: 116 DPLDPSRIIDTLSIARRKHP-SSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             + P +  D  ++AR+      ++   L    +  G+ +     H AL D+     +  
Sbjct: 376 VDITPVQAFDVAALARKTFGIGKKHTPSLQHYKEALGVDLP---SHTALSDAQTTMALLE 432

Query: 173 KMMVGGSQI 181
            ++  GS +
Sbjct: 433 HLIWEGSPL 441


>gi|156933393|ref|YP_001437309.1| exonuclease I [Cronobacter sakazakii ATCC BAA-894]
 gi|156531647|gb|ABU76473.1| hypothetical protein ESA_01206 [Cronobacter sakazakii ATCC BAA-894]
          Length = 491

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 52/178 (29%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G     DR  +  A+    +++        +  P       PEA+ + GIT +  
Sbjct: 30  DYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLITGITPQVA 89

Query: 71  KD-KPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           +    + +         F       + +N  +FD         R   DP   S       
Sbjct: 90  RARGENEAEFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQNDNSR 149

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L    GI   H + H A+ D +  
Sbjct: 150 WDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIE--HANAHDAMADVYAT 205


>gi|116493991|ref|YP_805725.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus casei ATCC
           334]
 gi|116104141|gb|ABJ69283.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus casei ATCC 334]
          Length = 470

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 69/189 (36%), Gaps = 26/189 (13%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEA 59
           R  +   IV D E     +  +++   EI  + +  + + +  F +F   P      P +
Sbjct: 269 RLARGDYIVIDTE---FVADRNQLDLTEISLLRVR-HHQVDGAFDIFTQLPEDHHVMPFS 324

Query: 60  LKLHGITDEFLKDK----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           +K+ GITD+ L       P   +   +        +   +      D+  + A L     
Sbjct: 325 VKITGITDDLLSQYGQPLPLAKAAVEQLLK-----HELVVGFALSNDLRALRAGL----N 375

Query: 116 DPLDPSRIIDTLSIARRKHP-SSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             + P +  D  ++AR+      ++   L    +  G+ +     H AL D+     +  
Sbjct: 376 VDITPVQAFDVAALARKTFGIGKKHTPSLQHYKEALGVDLP---SHTALSDAQTTMALLE 432

Query: 173 KMMVGGSQI 181
            ++  GS +
Sbjct: 433 HLIWEGSPL 441


>gi|195585608|ref|XP_002082573.1| GD11641 [Drosophila simulans]
 gi|194194582|gb|EDX08158.1| GD11641 [Drosophila simulans]
          Length = 281

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 63/198 (31%), Gaps = 30/198 (15%)

Query: 10  IVFDIETTG------LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           I  D E T          +   IIE    +  L   K    F  ++ P    + S    +
Sbjct: 66  IAVDFEATCWENQAPPHWREAEIIEFPAVLVNLKTGKIESEFHQYILPIESPRLSTYCTE 125

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAHNAKFDV 103
           L GI  + +      ++    F ++   +                  N  ++     +D 
Sbjct: 126 LTGIQQKTVDSGIPLTTAIVMFNEWLRHEIRTRNLTLPKMNKSNVLGNCAFVTW-TDWDF 184

Query: 104 G-FINAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           G  +  E  R   + P   ++ ID  +I R  +     +        G+    R  H  +
Sbjct: 185 GICLAKECNRKGIRKPAYFNQWIDVRAIYRSWYKYRPCNFTDALSHVGLAFEGR-AHSGI 243

Query: 162 LDSHLLSDVYIKMMVGGS 179
            D+  L  +  KMM  G+
Sbjct: 244 DDAKNLGALMCKMMRDGA 261


>gi|118346813|ref|XP_977115.1| exonuclease family protein [Tetrahymena thermophila]
 gi|89288652|gb|EAR86640.1| exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 1363

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 29/169 (17%)

Query: 11  VFDIETTGLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGITDE 68
           V D E    +     IIE    V  L   +   TF  ++ P      +P   K+ GI  +
Sbjct: 710 VIDFEC---NQPGYEIIEFPVLVIDLKKERIIDTFHTYVKPTTFPKINPYISKITGIQQK 766

Query: 69  FLKDKPSFSSIFSEFWDFF----NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            + + PSF  +  +   F     + +      ++   D  ++ +E   INK+ +  S + 
Sbjct: 767 DVANAPSFVQVIQKVEAFLQKYKDYEGCIL--YDCDSDCNYMKSEF--INKNYIPTSDVF 822

Query: 125 DTLSIARRKHPSS------RNDLNSL----------CKRYGITISHRSK 157
            +    R   P           L+            CK  GI  +    
Sbjct: 823 FSYINLRNVFPLEISGGVINKSLSHAQQVLQMEFQGCKHKGIDDARNQA 871


>gi|242087831|ref|XP_002439748.1| hypothetical protein SORBIDRAFT_09g019420 [Sorghum bicolor]
 gi|241945033|gb|EES18178.1| hypothetical protein SORBIDRAFT_09g019420 [Sorghum bicolor]
          Length = 283

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 20/189 (10%)

Query: 9   KIVFDIETT---GLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRK-NSPEALKL 62
            +V D E T   G       IIE  +V L+D    +T  TF+ ++ P      +     L
Sbjct: 5   FVVIDFEATCQEGSVIYPQEIIEFPSV-LVDGATGRTLSTFRTYVRPRHHPRLTDFCRDL 63

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINAELQRINKDPL 118
            GIT   +    + +        +     A+     +     +D   +     R     +
Sbjct: 64  TGITQGDVDAGVTLAEALGMHDRWLEAHGAKLGKLAVVTWGDWDCRTMLEGECRFKG--I 121

Query: 119 DPSRIIDTLSIARRKHPSS------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +     D     R    ++      R  L    ++ G+    R  H  L D+   + + +
Sbjct: 122 EKPHYFDDWINLRLPFSAAFGVGNVRFTLQDAIRKAGLQWEGR-LHCGLDDALNTAHLLV 180

Query: 173 KMMVGGSQI 181
           ++M  G+ +
Sbjct: 181 ELMRRGTLL 189


>gi|282600282|ref|ZP_05973706.2| exodeoxyribonuclease I [Providencia rustigianii DSM 4541]
 gi|282565948|gb|EFB71483.1| exodeoxyribonuclease I [Providencia rustigianii DSM 4541]
          Length = 479

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 57/178 (32%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G     DR  +   V   LD++  +     +  P       PEA+ + GIT +  
Sbjct: 18  DYETFGKHPALDRPAQFAGVRTDLDFNIIDEPEVFYCKPTDDYLPQPEAVMITGITPQIA 77

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
             +  + +         F+  N   + +N  +FD         R   DP   S       
Sbjct: 78  QANGVNEAEFAKRIHQSFSTPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYSWQQGNSR 137

Query: 124 ---IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D L       P   N            L  L K  G+  +H + H A+ D    
Sbjct: 138 WDLLDALRACFALRPEGINWPENDDGLPSLRLEHLTKANGV--AHENAHDAMSDVLAT 193


>gi|331683697|ref|ZP_08384293.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli H299]
 gi|331078649|gb|EGI49851.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli H299]
          Length = 474

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 59/187 (31%), Gaps = 25/187 (13%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALK 61
           K +   +  D ET G     DR  +  A+    +++        +  P       P A+ 
Sbjct: 5   KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64

Query: 62  LHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + GIT +  + K  + ++  +     FN  +      +N +FD         R   DP  
Sbjct: 65  ITGITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYA 124

Query: 120 PSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGA 160
            S          +D +       P                L  L K  GI   H + H A
Sbjct: 125 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSNAHDA 182

Query: 161 LLDSHLL 167
           + D +  
Sbjct: 183 MADVYAT 189


>gi|218705553|ref|YP_002413072.1| exonuclease I [Escherichia coli UMN026]
 gi|293405493|ref|ZP_06649485.1| sbcB [Escherichia coli FVEC1412]
 gi|298381181|ref|ZP_06990780.1| exodeoxyribonuclease I [Escherichia coli FVEC1302]
 gi|218432650|emb|CAR13545.1| exonuclease I [Escherichia coli UMN026]
 gi|291427701|gb|EFF00728.1| sbcB [Escherichia coli FVEC1412]
 gi|298278623|gb|EFI20137.1| exodeoxyribonuclease I [Escherichia coli FVEC1302]
          Length = 475

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|183602109|ref|ZP_02963477.1| hypothetical protein BIFLAC_07642 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683021|ref|YP_002469404.1| DNA polymerase III [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191341|ref|YP_002968735.1| DNA polymerase III subunit epsilon [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196747|ref|YP_002970302.1| DNA polymerase III subunit epsilon [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218602|gb|EDT89245.1| hypothetical protein BIFLAC_07642 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620671|gb|ACL28828.1| DNA polymerase III [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249733|gb|ACS46673.1| DNA polymerase III epsilon subunit [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251301|gb|ACS48240.1| DNA polymerase III epsilon subunit [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794334|gb|ADG33869.1| DNA polymerase III epsilon subunit [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 461

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 72/191 (37%), Gaps = 37/191 (19%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQ---------------VFLCP 50
            DIETTG  +  D II++G   +       + +K    +                 F  P
Sbjct: 235 IDIETTGTSAWRDYIIDVGFERMNLQTPAPEGAKARDVYSETDYAADGAYDQSRLSFGVP 294

Query: 51  --NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA--EWIAHNAKFDVGFI 106
                  +P   +L GI    +  +P F   +        E+     ++AHNA F+  F 
Sbjct: 295 LRCAEVANPFIAQLTGIDVTKIAGEPIFDE-WPRMQQALLERLMQQPYVAHNATFEHRFF 353

Query: 107 NAELQRINKDPLD-PSRIIDTLSIARRK---------HPSSRNDLNSLCKRYG-ITISHR 155
            A ++   +   +    I+DT+ ++R           HP   N L +  KR G +  +  
Sbjct: 354 MANVEGYAEAYRNGEITILDTMPMSRHWDAGSVPSPGHPHGDNTLEAYAKRQGALDGNSH 413

Query: 156 SKHGALLDSHL 166
            +H  L D+H+
Sbjct: 414 ERHLGLEDAHI 424


>gi|191637314|ref|YP_001986480.1| DNA polymerase III, alpha subunit (Gram-positive type)
           [Lactobacillus casei BL23]
 gi|190711616|emb|CAQ65622.1| DNA polymerase III, alpha subunit (Gram-positive type)
           [Lactobacillus casei BL23]
 gi|327381355|gb|AEA52831.1| DNA polymerase III PolC-type [Lactobacillus casei LC2W]
 gi|327384519|gb|AEA55993.1| DNA polymerase III PolC-type [Lactobacillus casei BD-II]
          Length = 478

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 69/189 (36%), Gaps = 26/189 (13%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEA 59
           R  +   IV D E     +  +++   EI  + +  + + +  F +F   P      P +
Sbjct: 269 RLARGDYIVIDTE---FVADRNQLDLTEISLLRVR-HHQVDGAFDIFTQLPEDHHVMPFS 324

Query: 60  LKLHGITDEFLKDK----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           +K+ GITD+ L       P   +   +        +   +      D+  + A L     
Sbjct: 325 VKITGITDDLLSQYGQPLPLAKAAVEQLLK-----HELVVGFALSNDLRALRAGL----N 375

Query: 116 DPLDPSRIIDTLSIARRKHP-SSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             + P +  D  ++AR+      ++   L    +  G+ +     H AL D+     +  
Sbjct: 376 VDITPVQAFDVAALARKTFGIGKKHTPSLQHYKEALGVDLP---SHTALSDAQTTMALLE 432

Query: 173 KMMVGGSQI 181
            ++  GS +
Sbjct: 433 HLIWEGSPL 441


>gi|194431379|ref|ZP_03063671.1| exodeoxyribonuclease I [Shigella dysenteriae 1012]
 gi|194420204|gb|EDX36281.1| exodeoxyribonuclease I [Shigella dysenteriae 1012]
 gi|332091578|gb|EGI96659.1| exodeoxyribonuclease I [Shigella dysenteriae 155-74]
          Length = 475

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|300898614|ref|ZP_07116941.1| exonuclease [Escherichia coli MS 198-1]
 gi|300357710|gb|EFJ73580.1| exonuclease [Escherichia coli MS 198-1]
          Length = 499

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 25  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 84

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 85  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 144

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 145 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 202

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 203 NAHDAMADVYAT 214


>gi|331658092|ref|ZP_08359054.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli TA206]
 gi|331056340|gb|EGI28349.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli TA206]
          Length = 474

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 25/187 (13%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS-PEALK 61
           K +   +  D ET G     DR  +  A+   + ++        +  P       P A+ 
Sbjct: 5   KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVL 64

Query: 62  LHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + GIT +  + K  + ++  +     F   +      +N +FD         R   DP  
Sbjct: 65  ITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYA 124

Query: 120 PSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGA 160
            S          +D +       P                L  L K  GI   H + H A
Sbjct: 125 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSNAHDA 182

Query: 161 LLDSHLL 167
           + D +  
Sbjct: 183 MADVYAT 189


>gi|229175605|ref|ZP_04303114.1| Sporulation inhibitor KapD [Bacillus cereus MM3]
 gi|228607863|gb|EEK65176.1| Sporulation inhibitor KapD [Bacillus cereus MM3]
          Length = 207

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 20/189 (10%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            ++ + +  D E T         G   +   IIE+G V ++   K   T+   + P    
Sbjct: 1   MDEQQFLFLDFEFTMPQHRKKPKGFFPE---IIEVGLVSVV-GCKVEDTYSAHVRPKTFP 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +    K  GI  E +    SF  +  +  ++        +      D+  +    +  
Sbjct: 57  SLTDRCKKFLGIKQEVVDKGISFPELVEKLAEYERRCKPTIVTW-GNMDMKVLKHNCEMA 115

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             D     +  D     ++     RN   L    + YG        H AL D+    +++
Sbjct: 116 RVDFPFLGQCRDLSLEYKKFF-GERNQTGLWKAIEAYG-KAGTGKHHCALDDAMTTYNIF 173

Query: 172 IKMMVGGSQ 180
            K++    +
Sbjct: 174 -KLVEKDKE 181


>gi|291520945|emb|CBK79238.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Coprococcus catus GD/7]
          Length = 218

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 15/182 (8%)

Query: 7   MRKIVFDIETTGLDSKND--------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M  +V D+E   +               I+IGAV L +  K   T + ++ P      P 
Sbjct: 1   MFYLVIDLEMCRVPRDYRNKAYHYAYETIQIGAVLLNEEFKQVGTIREYVHPEHGVIDPF 60

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-- 116
             KL GI +  +K  P          D+  ++  +    +       ++    +   D  
Sbjct: 61  IEKLTGIKNSQVKKAPCIGEALVHMIDWIGDREYKVYTWSESDRNQLLHEITAKQITDES 120

Query: 117 ---PLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
               +   R +D  +  ++R   + R  L     R  I       H  + D+     +  
Sbjct: 121 VDAFMMEDRWVDYQMVFSQRFQLTRRISLEEALGRADID-PKGKFHDGMDDAVNTGLLIE 179

Query: 173 KM 174
           K+
Sbjct: 180 KL 181


>gi|238919203|ref|YP_002932718.1| exonuclease I [Edwardsiella ictaluri 93-146]
 gi|238868772|gb|ACR68483.1| exodeoxyribonuclease I [Edwardsiella ictaluri 93-146]
          Length = 473

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 52/178 (29%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G     DR  +   V    D++        +  P       P+A+ + GIT +  
Sbjct: 12  DYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRPADDYLPQPDAVMITGITPQTA 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L      +         F+      + +N  +FD         R   DP   S       
Sbjct: 72  LAQGVCEAEFAGRIHRLFSVPGTCVLGYNNIRFDDEVSRNLFYRNFFDPYAYSWQNGNSR 131

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L +  GI   H + H A+ D +  
Sbjct: 132 WDLLDVVRTCYALRPEGIVWPENEQGLPSFKLEHLSQANGIE--HSNAHDAMADVYAT 187


>gi|218558892|ref|YP_002391805.1| exonuclease I [Escherichia coli S88]
 gi|218365661|emb|CAR03398.1| exonuclease I [Escherichia coli S88]
          Length = 475

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 61/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHR 155
            DP   S          +D +       P   +            L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGIHWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|169633154|ref|YP_001706890.1| putative DNA exonuclease X [Acinetobacter baumannii SDF]
 gi|169151946|emb|CAP00802.1| putative DNA exonuclease X [Acinetobacter baumannii]
          Length = 234

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 93/236 (39%), Gaps = 34/236 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVF--LCPNGRKNS 56
           M +   M+ I+ D ET    + N   IEI    +E+     T    ++F  L   G   S
Sbjct: 1   MFKGPDMQAIILDTET---HTLNGLPIEIAYAPIEINAGKLTLDKSKLFDQLYQVGTPIS 57

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
             A+ +H I +  L+++P     +  F     +     I HN  +D+  I     R   D
Sbjct: 58  YAAMAVHHILESDLENQP----HYKTFK--LPDTTTYIIGHNIDYDIAAI----ARCGVD 107

Query: 117 PLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISH-------RSKHGALLDSHLLS 168
            +   + I TL++ R+  P +  +++++L   Y I+          +  H A  D  L +
Sbjct: 108 -VSHIKPICTLALTRKTWPDAEAHNISALI--YMISQGSSKARELLKGAHRADADIILTA 164

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDE 223
           ++ + ++      +      E+ +   E+  +P  I+  K        + K+ +  
Sbjct: 165 NILMHIVY-----HLNIHDIEELYRVSEEARIPTTINFGKHKGTAIAELPKDYIQW 215


>gi|260577353|ref|ZP_05845324.1| Exodeoxyribonuclease I [Rhodobacter sp. SW2]
 gi|259020426|gb|EEW23751.1| Exodeoxyribonuclease I [Rhodobacter sp. SW2]
          Length = 457

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 28/189 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALKLHG 64
           M  + +D+ETTG+    D+ ++  A+   D          +  + P+    SP+AL + G
Sbjct: 1   MGFVFYDLETTGISPAFDQPLQFAAIRTDDSLVEIERVNLRCRIAPHIIP-SPQALFVTG 59

Query: 65  ITDEFLKDK--PSFSSIFSEFWDFF-NEQNAEWIAHNA-KFDVGFINAELQR-----INK 115
           +T   L D   PS         +       A W+  N  +FD   +     +     I  
Sbjct: 60  VTPAQLVDPELPSLFEFTQTIMELTERWAPATWVGFNTIRFDEEVLRQAFYQNLQPNIYA 119

Query: 116 DPLDPSRIIDTLSIARRKHPSSR--------------NDLNSLCKRYGITISHRSKHGAL 161
             L+ +  +D L+        +R                L+ L    G   +  + H AL
Sbjct: 120 TQLNGNNRLDILTAVYAVWCRNRGLMHWPTDDTDRTTFKLDRLAPANG--FNAHNAHDAL 177

Query: 162 LDSHLLSDV 170
            D      +
Sbjct: 178 GDVEATIHI 186


>gi|193077855|gb|ABO12732.2| putative DNA exonuclease X [Acinetobacter baumannii ATCC 17978]
          Length = 228

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 93/230 (40%), Gaps = 34/230 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVF--LCPNGRKNSPEALKL 62
           M+ I+ D ET    + N   IEI    +E+     T    ++F  L   G   S  A+ +
Sbjct: 1   MQAIILDTET---HTLNGLPIEIAYAPIEINAGKLTLDKSKLFDQLYQVGTPISYAAMAV 57

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H I +  L+++P     +  F     +     I HN  +D+  I     R   D +   +
Sbjct: 58  HHILESDLENQP----HYKTFK--LPDTTTYIIGHNIDYDIAAI----ARCGVD-VSHIK 106

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISH-------RSKHGALLDSHLLSDVYIKM 174
            I TL++AR+  P +  +++++L   Y I+          +  H A  D  L +++ + +
Sbjct: 107 PICTLALARKTWPDAEAHNISALI--YMISQGSSKARELLKGAHRADADIILTANILMHI 164

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDE 223
           +      +   +  E+ +   E+  +P  I+  K        + K+ +  
Sbjct: 165 VY-----HLNIQDIEELYRVSEEARIPTTINFGKHKGTAIAELPKDYIQW 209


>gi|293410372|ref|ZP_06653948.1| sbcB [Escherichia coli B354]
 gi|291470840|gb|EFF13324.1| sbcB [Escherichia coli B354]
          Length = 475

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|293446370|ref|ZP_06662792.1| exodeoxyribonuclease I [Escherichia coli B088]
 gi|291323200|gb|EFE62628.1| exodeoxyribonuclease I [Escherichia coli B088]
          Length = 475

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|300824755|ref|ZP_07104860.1| exonuclease [Escherichia coli MS 119-7]
 gi|300522742|gb|EFK43811.1| exonuclease [Escherichia coli MS 119-7]
          Length = 499

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 25  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 84

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 85  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 144

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 145 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 202

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 203 NAHDAMADVYAT 214


>gi|82543387|ref|YP_407334.1| exonuclease I [Shigella boydii Sb227]
 gi|81244798|gb|ABB65506.1| deoxyribophosphodiesterase [Shigella boydii Sb227]
 gi|320185776|gb|EFW60530.1| Exodeoxyribonuclease I [Shigella flexneri CDC 796-83]
 gi|332097090|gb|EGJ02073.1| exodeoxyribonuclease I [Shigella boydii 3594-74]
          Length = 474

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 59/191 (30%), Gaps = 26/191 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-P 57
           M   +K    +  D ET G     DR  +  A+    +++        +  P       P
Sbjct: 1   MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60

Query: 58  EALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINK 115
            A+ + GIT +  + K  + ++  +     F   +      +N +FD         R   
Sbjct: 61  GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  GI   H +
Sbjct: 121 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSN 178

Query: 157 KHGALLDSHLL 167
            H A+ D +  
Sbjct: 179 AHDAMADVYAT 189


>gi|25026770|ref|NP_736824.1| DNA polymerase III subunit epsilon [Corynebacterium efficiens
           YS-314]
 gi|23492049|dbj|BAC17024.1| putative DNA polymerase III [Corynebacterium efficiens YS-314]
          Length = 420

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +   I+++G+     R+I   A+ L   ++   TF   L P    + P    LHG+TDE
Sbjct: 91  YVAVTIQSSGIHPSTSRMITFTAITLTADNEPVETFHAVLNPG---SDPGPFHLHGVTDE 147

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +    FS I        + +      HNA    GFI +E +R   D    +R
Sbjct: 148 EFRSARRFSQILKAVDRLIDGRTLIL--HNAPRTWGFIVSEAKRAMNDAARANR 199


>gi|254524227|ref|ZP_05136282.1| exonuclease [Stenotrophomonas sp. SKA14]
 gi|219721818|gb|EED40343.1| exonuclease [Stenotrophomonas sp. SKA14]
          Length = 188

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 16/183 (8%)

Query: 7   MRKIVF-DIETTGLDSKND--------RIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS 56
           M  I F D ETTGL + ++         ++++ A +      K   +  V + P+G    
Sbjct: 1   MSLIFFYDTETTGLPAFSEPSDAPHQPHLVQVAASLVNATTRKVISSIDVLVKPDGWTIP 60

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114
            E  ++HGIT+E  +      S+ +E        +   I H   FD   +   L+R    
Sbjct: 61  EEVTRIHGITNEQAEQCGLDESLVTELVLDMWRLSDVRIGHVESFDARILRIALKRYATA 120

Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              D         T   A+     ++N  L    + + +       H A  D     +++
Sbjct: 121 QVADEWKAGTAQCTAKAAKALMGMTKNPKLIDAHRHF-LGREFDGAHTAHADMVACREIH 179

Query: 172 IKM 174
             M
Sbjct: 180 WAM 182


>gi|332278835|ref|ZP_08391248.1| exonuclease I [Shigella sp. D9]
 gi|332101187|gb|EGJ04533.1| exonuclease I [Shigella sp. D9]
          Length = 491

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 76

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 194

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 195 NAHDAMADVYAT 206


>gi|325122866|gb|ADY82389.1| putative DNA exonuclease X [Acinetobacter calcoaceticus PHEA-2]
          Length = 228

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 34/230 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVF--LCPNGRKNSPEALKL 62
           M+ I+ D ET    + N   IEI    +E+     T    ++F  L   G   S  A+ +
Sbjct: 1   MQTIILDTET---HTLNGLPIEIAYAPIEINAGKLTLDKSKLFDQLYQVGTPISYAAMAV 57

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H I +  L+++P     +  F     E     I HN  +D+  I     R   D +   +
Sbjct: 58  HHILESDLENQP----HYKTFK--LPETTTYIIGHNIDYDIAAI----ARCGVD-VSNIK 106

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISH-------RSKHGALLDSHLLSDVYIKM 174
            I TL++AR+  P +  +++++L   Y I+          +  H A  D  L +++ + +
Sbjct: 107 PICTLALARKTWPDAEAHNISALI--YMISQGSSKARELLKGAHRADADIILTANILMHI 164

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDE 223
           +      +   +  E+ +   E+  +P  I+  K        + K+ +  
Sbjct: 165 VY-----HLNIQDIEELYRVSEEARIPTTINFGKHKGTAIAELPKDYIQW 209


>gi|323172599|gb|EFZ58233.1| exodeoxyribonuclease I [Escherichia coli LT-68]
          Length = 475

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|187733588|ref|YP_001879865.1| exonuclease I [Shigella boydii CDC 3083-94]
 gi|187430580|gb|ACD09854.1| exodeoxyribonuclease I [Shigella boydii CDC 3083-94]
 gi|332343794|gb|AEE57128.1| exodeoxyribonuclease [Escherichia coli UMNK88]
          Length = 475

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|147788|gb|AAA19938.1| exonuclease I [Escherichia coli]
          Length = 466

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|12084680|pdb|1FXX|A Chain A, The Structure Of Exonuclease I Suggests How Processivity
           Is Achieved
 gi|166007143|pdb|2QXF|A Chain A, Product Bound Structure Of Exonuclease I At 1.5 Angstrom
           Resolution
 gi|193885301|pdb|3C94|A Chain A, ExoiSSB-Ct Complex
 gi|193885304|pdb|3C95|A Chain A, Exonuclease I (Apo)
 gi|284055587|pdb|3HL8|A Chain A, Crystal Structure Of Exonuclease I In Complex With
           Inhibitor Bcbp
 gi|284055600|pdb|3HP9|A Chain A, Crystal Structure Of SsbEXONUCLEASE I IN COMPLEX WITH
           Inhibitor Cfam
          Length = 482

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|320177928|gb|EFW52912.1| Exodeoxyribonuclease I [Shigella boydii ATCC 9905]
          Length = 475

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|296087843|emb|CBI35099.3| unnamed protein product [Vitis vinifera]
          Length = 520

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 14/182 (7%)

Query: 9   KIVFDIETT---GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D E T   G +     IIE    +      +    FQ ++ P   +  S     L 
Sbjct: 246 FVVIDFEATCDKGKNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQILSDFCKDLT 305

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRIN--KD 116
           GI    +    + S        +  ++         +   + +D   +     R    + 
Sbjct: 306 GIQQIQVDRGVTLSEALLRHDKWLEKKGIKNTNFAVVTW-SNWDCRVMLESECRFKKIRK 364

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P   +R I+     R        +L    +  G+    R  H  L D+   + +   +M 
Sbjct: 365 PPYFNRWINLKVPFREVFGGVWCNLKEAVEMAGLAWQGR-AHCGLDDAKNTARLLAFLMH 423

Query: 177 GG 178
            G
Sbjct: 424 RG 425


>gi|225463988|ref|XP_002263189.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 415

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 14/182 (7%)

Query: 9   KIVFDIETT---GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D E T   G +     IIE    +      +    FQ ++ P   +  S     L 
Sbjct: 141 FVVIDFEATCDKGKNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQILSDFCKDLT 200

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRIN--KD 116
           GI    +    + S        +  ++         +   + +D   +     R    + 
Sbjct: 201 GIQQIQVDRGVTLSEALLRHDKWLEKKGIKNTNFAVVTW-SNWDCRVMLESECRFKKIRK 259

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P   +R I+     R        +L    +  G+    R  H  L D+   + +   +M 
Sbjct: 260 PPYFNRWINLKVPFREVFGGVWCNLKEAVEMAGLAWQGR-AHCGLDDAKNTARLLAFLMH 318

Query: 177 GG 178
            G
Sbjct: 319 RG 320


>gi|89330232|emb|CAJ84173.1| exodeoxyribonuclease I [Escherichia coli K-12]
          Length = 467

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|16129952|ref|NP_416515.1| exonuclease I [Escherichia coli str. K-12 substr. MG1655]
 gi|89108831|ref|AP_002611.1| exonuclease I [Escherichia coli str. K-12 substr. W3110]
 gi|170081641|ref|YP_001730961.1| exonuclease I [Escherichia coli str. K-12 substr. DH10B]
 gi|238901201|ref|YP_002926997.1| exonuclease I [Escherichia coli BW2952]
 gi|462029|sp|P04995|EX1_ECOLI RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
           Full=DNA deoxyribophosphodiesterase; Short=dRPase
 gi|405954|gb|AAA16417.1| exonuclease I [Escherichia coli]
 gi|1736685|dbj|BAA15839.1| exonuclease I [Escherichia coli str. K12 substr. W3110]
 gi|1788321|gb|AAC75072.1| exonuclease I [Escherichia coli str. K-12 substr. MG1655]
 gi|89330228|emb|CAJ84171.1| exodeoxyribonuclease I [Escherichia coli str. K-12 substr. MG1655]
 gi|169889476|gb|ACB03183.1| exonuclease I [Escherichia coli str. K-12 substr. DH10B]
 gi|238861050|gb|ACR63048.1| exonuclease I [Escherichia coli BW2952]
 gi|260448888|gb|ACX39310.1| Exodeoxyribonuclease I [Escherichia coli DH1]
 gi|315136644|dbj|BAJ43803.1| exonuclease I [Escherichia coli DH1]
 gi|315618014|gb|EFU98606.1| exodeoxyribonuclease I [Escherichia coli 3431]
          Length = 475

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|227533220|ref|ZP_03963269.1| DNA polymerase III, alpha subunit [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227189157|gb|EEI69224.1| DNA polymerase III, alpha subunit [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 470

 Score = 63.3 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 69/189 (36%), Gaps = 26/189 (13%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEA 59
           R  +   IV D E     +  +++   EI  + +  + + +  F +F   P      P +
Sbjct: 269 RLARGDYIVIDTE---FVADRNQLDLTEISLLRVR-HHQVDGAFDIFTQLPEDHHVMPFS 324

Query: 60  LKLHGITDEFLKDK----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           +K+ GITD+ L       P   +   +        +   +      D+  + A L     
Sbjct: 325 VKITGITDDLLSQYGQPLPLAKAAVEQLLK-----HELVVGFALSNDLRALRAGL----N 375

Query: 116 DPLDPSRIIDTLSIARRKHP-SSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             + P +  D  ++AR+      ++   L    +  G+ +     H AL D+     +  
Sbjct: 376 VDITPLQAFDVAALARKTFGIGKKHTPSLQHYKEALGVDLP---SHTALSDAQTTMALLE 432

Query: 173 KMMVGGSQI 181
            ++  GS +
Sbjct: 433 HLIWEGSPL 441


>gi|193062859|ref|ZP_03043952.1| exodeoxyribonuclease I [Escherichia coli E22]
 gi|194428755|ref|ZP_03061291.1| exodeoxyribonuclease I [Escherichia coli B171]
 gi|260844621|ref|YP_003222399.1| exonuclease I [Escherichia coli O103:H2 str. 12009]
 gi|192931502|gb|EDV84103.1| exodeoxyribonuclease I [Escherichia coli E22]
 gi|194413202|gb|EDX29488.1| exodeoxyribonuclease I [Escherichia coli B171]
 gi|257759768|dbj|BAI31265.1| exonuclease I [Escherichia coli O103:H2 str. 12009]
 gi|323161928|gb|EFZ47802.1| exodeoxyribonuclease I [Escherichia coli E128010]
          Length = 475

 Score = 63.3 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|300920252|ref|ZP_07136698.1| exonuclease [Escherichia coli MS 115-1]
 gi|301018905|ref|ZP_07183135.1| exonuclease [Escherichia coli MS 196-1]
 gi|299882459|gb|EFI90670.1| exonuclease [Escherichia coli MS 196-1]
 gi|300412754|gb|EFJ96064.1| exonuclease [Escherichia coli MS 115-1]
          Length = 499

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 25  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 84

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 85  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 144

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 145 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 202

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 203 NAHDAMADVYAT 214


>gi|256017814|ref|ZP_05431679.1| exonuclease I [Shigella sp. D9]
          Length = 475

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|331673547|ref|ZP_08374310.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli TA280]
 gi|331068820|gb|EGI40212.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli TA280]
          Length = 491

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 76

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 194

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 195 NAHDAMADVYAT 206


>gi|313217587|emb|CBY38652.1| unnamed protein product [Oikopleura dioica]
 gi|313232309|emb|CBY09418.1| unnamed protein product [Oikopleura dioica]
          Length = 627

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 9   KIVFDIETTGLDSKN----DRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKL 62
            +  D E T   +        IIE    +  ++  K    F  ++ P  +   S   ++L
Sbjct: 87  FVCIDFEATCERNNTFNYPHEIIEFPACLVHIESRKIVGEFHSYVRPFRKAHLSDFCMEL 146

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
            GIT E +   P F  +F +F  +     
Sbjct: 147 TGITQEKVDQAPYFPQVFKQFVGWLRSYG 175


>gi|312973748|ref|ZP_07787920.1| exodeoxyribonuclease I [Escherichia coli 1827-70]
 gi|310332343|gb|EFP99578.1| exodeoxyribonuclease I [Escherichia coli 1827-70]
          Length = 475

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|307191666|gb|EFN75140.1| Prion protein-interacting protein [Harpegnathos saltator]
          Length = 225

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 67/183 (36%), Gaps = 26/183 (14%)

Query: 2   IRKNKMRKIVFDIETTG-----LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN 55
           I +N    +V D E T      L  +   IIE+  AV      K    F  ++ P     
Sbjct: 8   ITQNFEYLLVMDFEATCEKHQPLKPQ--EIIELPCAVLSTRDWKLKDVFHEYIKPRVHPI 65

Query: 56  -SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFIN 107
            +P   +L GI  + + ++P F  +FS F ++  +         + ++     +D+  + 
Sbjct: 66  LTPFCTELTGIIQDIVDNQPYFPDVFSNFCEWLTKGGYFDESNKSTFVT-CGNWDLKVML 124

Query: 108 AELQRINKDPLDPS--RIID---TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
               +++   L     + ID   T S     +P     L  +  R  I +  R  H  + 
Sbjct: 125 PSQCKLDGITLPDQFKQWIDLKHTFSEFSMYYP---RSLPDMLTRLNIPLQGR-LHSGID 180

Query: 163 DSH 165
           D  
Sbjct: 181 DVK 183


>gi|300936684|ref|ZP_07151588.1| exonuclease [Escherichia coli MS 21-1]
 gi|300458265|gb|EFK21758.1| exonuclease [Escherichia coli MS 21-1]
          Length = 474

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 59/191 (30%), Gaps = 26/191 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-P 57
           M   +K    +  D ET G     DR  +  A+    +++        +  P       P
Sbjct: 1   MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60

Query: 58  EALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINK 115
            A+ + GIT +  + K  + ++  +     F   +      +N +FD         R   
Sbjct: 61  GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  GI   H +
Sbjct: 121 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSN 178

Query: 157 KHGALLDSHLL 167
            H A+ D +  
Sbjct: 179 AHDAMADVYAT 189


>gi|71005756|ref|XP_757544.1| hypothetical protein UM01397.1 [Ustilago maydis 521]
 gi|74703736|sp|Q4PER6|REXO4_USTMA RecName: Full=RNA exonuclease 4
 gi|46096667|gb|EAK81900.1| hypothetical protein UM01397.1 [Ustilago maydis 521]
          Length = 375

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 11/170 (6%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +K     +  D E  G+  K    I +  V ++++      +  F+ P  +        +
Sbjct: 129 KKEPGNYLAIDCEMVGVGDKGSESI-LARVSIVNFHGAT-IYDQFVRPQEKVTDYR-TWV 185

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G+  + LK  PSFS +  E  +    +    + H  + D+  +     ++        +
Sbjct: 186 SGVRPKDLKGAPSFSQVQGEVANLI--KGKVLVGHAIQNDLKALLLSHPKVLIRDTATFQ 243

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITIS-HRSKHGALLDSHLLSDVY 171
            +  L  A+ K+PS +  L  L    GI I      H ++ D+     V+
Sbjct: 244 PLRDL--AKTKYPSLK-KLAKLV--LGIDIQLEGESHSSVEDARATMAVF 288


>gi|331677916|ref|ZP_08378591.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli H591]
 gi|331074376|gb|EGI45696.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli H591]
          Length = 491

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 76

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 194

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 195 NAHDAMADVYAT 206


>gi|170769782|ref|ZP_02904235.1| exodeoxyribonuclease I [Escherichia albertii TW07627]
 gi|170121396|gb|EDS90327.1| exodeoxyribonuclease I [Escherichia albertii TW07627]
          Length = 475

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 62/192 (32%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K++   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNNGKHQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEIFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   N   + +N  +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFATRIHSLFTVPNTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENEEGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|198477154|ref|XP_002136732.1| GA23276 [Drosophila pseudoobscura pseudoobscura]
 gi|198477160|ref|XP_002136735.1| GA23279 [Drosophila pseudoobscura pseudoobscura]
 gi|198145037|gb|EDY71749.1| GA23276 [Drosophila pseudoobscura pseudoobscura]
 gi|198145040|gb|EDY71752.1| GA23279 [Drosophila pseudoobscura pseudoobscura]
          Length = 223

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 68/216 (31%), Gaps = 28/216 (12%)

Query: 10  IVFDIETTG------LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALK 61
           I  D E T          +   IIE    +  L        F  ++ P  +   S     
Sbjct: 8   ISVDFEATCWVNQPAQQFRLSEIIEFPAILVNLKTGMVEAEFHKYVMPVEKPQLSEYCTS 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAH-NAKFD 102
           L GI  + ++      +  + F ++  ++                  N  ++   N  F 
Sbjct: 68  LTGIQQKTVEAGVPLQTALNSFIEWLKKELSARNLVLPKMSMTNPQGNCFFVTWTNWDFG 127

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           +       ++  + P   ++ ID  +I ++ +       N+  +   +T   R  H  + 
Sbjct: 128 ICLAKECARKNIRKPTCFNQWIDAKAIYQKWYKYRPFSFNNALEHVRLTFQGR-AHSGID 186

Query: 163 DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
           D+  L  +  KM   G+  +        +   E + 
Sbjct: 187 DAKNLGSLICKMFRDGAPFSITMDLTPHKELNENRG 222


>gi|188590221|ref|YP_001919934.1| exonuclease family protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500502|gb|ACD53638.1| exonuclease family protein [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 303

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 8/157 (5%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFL-KDKPSFSSIF 80
            + IIEIGA+++  Y K     + ++ P+     +P    +  IT + L K+  +F    
Sbjct: 36  ENEIIEIGAIKVDKYMKQVAEMREYIKPSVFPVMNPIVTNITKITMDTLQKEGITFKQGM 95

Query: 81  SEFWDFFNEQNAEWIAHNAKFD--VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138
            +      + +      +   D     I         D       +D    + +     +
Sbjct: 96  DKLKGMIEDGDVIC---SWAKDDIAEIIINSNYHNYTDLSWIKEYLDLQEYSTKILGHKK 152

Query: 139 -NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              L S      I + +   H AL D+     V+  +
Sbjct: 153 AMGLKSALDELKIKVDNTKLHDALNDAEYTLLVFKHI 189


>gi|94265398|ref|ZP_01289151.1| hypothetical protein MldDRAFT_4837 [delta proteobacterium MLMS-1]
 gi|93454100|gb|EAT04432.1| hypothetical protein MldDRAFT_4837 [delta proteobacterium MLMS-1]
          Length = 184

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 60/138 (43%), Gaps = 12/138 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M  I+FD ET G+      I  +E+ A  + D+      F+  L  + +   PEA +++G
Sbjct: 1   MDWIIFDTETNGIRPP---IFTLELAAQRMRDWLPEGPPFRRLLN-HNQDIQPEASRING 56

Query: 65  ITDEFLK--DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            T E L+  D+P    ++++F D+    +  ++A+N  +D+  +    +R         +
Sbjct: 57  FTREILERDDEPPL-EVYADFADY--AADLPFVAYNLDYDLDKVLIAHRR-GLHTWQQLQ 112

Query: 123 IIDTLSIARRKHPSSRND 140
                +    +    ++ 
Sbjct: 113 AFVMKTWFPSRITFGKHK 130


>gi|194882086|ref|XP_001975144.1| GG22157 [Drosophila erecta]
 gi|190658331|gb|EDV55544.1| GG22157 [Drosophila erecta]
          Length = 223

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 10  IVFDIETTG------LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           I  D E T          +   IIE    +  L   K    F  ++ P    + S    +
Sbjct: 8   IAVDFEATCWEKQAPPQWREAEIIEFPAVLVNLKTGKIEAEFHKYILPIESPRLSTYCTE 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAHN-AKFD 102
           L GI  + +       +    F ++  ++                  N  ++      F 
Sbjct: 68  LTGIQQKTVDSGVPLQTALMMFHEWLRKELRARNLTLPKMNKSNIMGNCAFVTWTDWDFG 127

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           +       ++  +     ++ ID  ++ R  +     +     +  G+    R  H  + 
Sbjct: 128 ICLSKECTRKRMRKAAYFNQWIDVRAVYRSWYQYRPCNFTDALEHVGLAFEGR-AHSGID 186

Query: 163 DSHLLSDVYIKMMVGGS 179
           D+  L  +  KM+  G+
Sbjct: 187 DAKNLGALMCKMVRDGA 203


>gi|323168854|gb|EFZ54534.1| exodeoxyribonuclease I [Shigella sonnei 53G]
          Length = 475

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|300903879|ref|ZP_07121780.1| exonuclease [Escherichia coli MS 84-1]
 gi|301307139|ref|ZP_07213168.1| exonuclease [Escherichia coli MS 124-1]
 gi|300404137|gb|EFJ87675.1| exonuclease [Escherichia coli MS 84-1]
 gi|300837654|gb|EFK65414.1| exonuclease [Escherichia coli MS 124-1]
 gi|315253362|gb|EFU33330.1| exonuclease [Escherichia coli MS 85-1]
          Length = 499

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 25  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 84

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 85  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 144

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 145 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 202

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 203 NAHDAMADVYAT 214


>gi|251778634|ref|ZP_04821554.1| exonuclease family protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082949|gb|EES48839.1| exonuclease family protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 303

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 8/157 (5%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFL-KDKPSFSSIF 80
            + IIEIGA+++  Y K     + ++ P+     +P    +  IT + L K+  +F    
Sbjct: 36  ENEIIEIGAIKVDKYMKQVAEMREYIKPSVFPVMNPIVTNITKITMDTLQKEGITFKQGM 95

Query: 81  SEFWDFFNEQNAEWIAHNAKFD--VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138
            +      + +      +   D     I         D       +D    + +     +
Sbjct: 96  DKLKGMIEDGDVIC---SWAKDDIAEIIINSNYHNYTDLSWIKEYLDLQEYSTKILGHKK 152

Query: 139 -NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              L S      I + +   H AL D+     V+  +
Sbjct: 153 AMGLKSALDELKIKVDNTKLHDALNDAEYTLLVFKHI 189


>gi|225558465|gb|EEH06749.1| RNA exonuclease [Ajellomyces capsulatus G186AR]
          Length = 533

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D E  G+    DR   +  V +++Y+   + +  F+ P           + G++ 
Sbjct: 125 RYVALDCEMVGVGQNPDRDSALARVSIVNYNG-EQVYDSFVLPKEEVTDWR-THVSGVSP 182

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + D   F  +  +     +      + H  + D+  +      +   P    R     
Sbjct: 183 KHMTDAREFEVVQRDVAGILD--GCILVGHAVRNDLDAL------LLSHPKHDIRDTSKH 234

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I   + H ++ D+     ++ +
Sbjct: 235 PPYRKIAGGGSPRLKILASELLGLEI-QGAAHSSIEDAQATMLLFRR 280


>gi|191167705|ref|ZP_03029513.1| exodeoxyribonuclease I [Escherichia coli B7A]
 gi|209919475|ref|YP_002293559.1| exonuclease I [Escherichia coli SE11]
 gi|190902218|gb|EDV61959.1| exodeoxyribonuclease I [Escherichia coli B7A]
 gi|209912734|dbj|BAG77808.1| exonuclease I [Escherichia coli SE11]
 gi|320198703|gb|EFW73303.1| Exodeoxyribonuclease I [Escherichia coli EC4100B]
          Length = 475

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|309797270|ref|ZP_07691665.1| exonuclease [Escherichia coli MS 145-7]
 gi|308119145|gb|EFO56407.1| exonuclease [Escherichia coli MS 145-7]
          Length = 475

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|308050910|ref|YP_003914476.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
 gi|307633100|gb|ADN77402.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
          Length = 196

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 16/184 (8%)

Query: 8   RKIVFDIETTGLD------SKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
           R +  D E T  D      ++   II+ G  E+ ++    +RT   ++       S    
Sbjct: 4   RILCIDTELTCWDDPAYQKAQTLEIIQFGLAEIDIERFCVSRTGSYYITNVRHPVSKFCY 63

Query: 61  KLHGITDEFL-KDKPSFSSIFSEFWD--FFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +L GI+   L K     +             ++    ++     +  ++  +      D 
Sbjct: 64  QLTGISQSTLDKRGMPLAQAAELLTTKWGVGQRWNGLVS--WGDERSWMAPDFAAKGVDY 121

Query: 118 LDPSRIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              + +++     R     H   R  L S   RYG+ ++   +H A  D+  L+++ + M
Sbjct: 122 PFHNGLLNLADYYRFNFCSHRRERASLTSAAIRYGVEVAQ-PQHNAEADALTLANLVMAM 180

Query: 175 MVGG 178
           +  G
Sbjct: 181 IRAG 184


>gi|258621526|ref|ZP_05716559.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258627541|ref|ZP_05722318.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580123|gb|EEW05095.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258586144|gb|EEW10860.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 176

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 68/184 (36%), Gaps = 20/184 (10%)

Query: 4   KNKMRKIVFDIE----------TTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNG 52
            N  R + FD+E          TTG       IIE+G  E+ L   K  +  Q F+ P  
Sbjct: 1   MNYNRVVCFDLEMCCWNENGVGTTG------EIIEVGLAEIDLSAGKIVKRAQYFVKPEK 54

Query: 53  RKNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            + S    +L GIT   + K       +       F   N  + +   + D+  IN   +
Sbjct: 55  DEISLFCAELTGITPRKIEKQGRPLVEVLQSMVKNFGGSNKIYASW-GRDDLILINECRE 113

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +    P      + TL   + +    R    +  +  GI    R  H   +D++ L+ + 
Sbjct: 114 KGIPVPFQEFLNLATLYRIQHRLKDKRIGHRAAQESQGIEWEGRQ-HSGYVDAYNLAKLA 172

Query: 172 IKMM 175
           + M+
Sbjct: 173 LTML 176


>gi|260776120|ref|ZP_05885015.1| hypothetical protein VIC_001504 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607343|gb|EEX33608.1| hypothetical protein VIC_001504 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 176

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 24/186 (12%)

Query: 4   KNKMRKIVFDIE----------TTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVFLCPN 51
            N  R + FD+E          TTG       IIE+G   ++L+      R  Q ++ P 
Sbjct: 1   MNHNRIVCFDLEMCCWNENGVGTTG------EIIEVGLAEIDLVKGEIVKRA-QYYVKPE 53

Query: 52  GRKNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
             + S    +L GIT   + K       +       F   N  + +     D   +  E 
Sbjct: 54  QDEVSLFCSQLTGITPRKIEKQGRPLEEVLKSMIKNFGGANKIYAS--WGRDDRILAQEC 111

Query: 111 QRINKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           Q    + P      + TL   + +    R    +  +   I    R  H   +D++ L+ 
Sbjct: 112 QDKGIEMPFKEFINLATLYRVQHRLKDKRIGHKAAQEAQNIEWEGRQ-HSGYVDAYNLAK 170

Query: 170 VYIKMM 175
           + + M+
Sbjct: 171 LALTML 176


>gi|317048759|ref|YP_004116407.1| exodeoxyribonuclease I [Pantoea sp. At-9b]
 gi|316950376|gb|ADU69851.1| Exodeoxyribonuclease I [Pantoea sp. At-9b]
          Length = 473

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 60/189 (31%), Gaps = 25/189 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEA 59
           +  +    +  D ET G     DR  +   +    D++        +  P       PEA
Sbjct: 1   MSASDFTFLFHDYETFGKSPSLDRPAQFAGLRTDKDFNAIGEPQVFYCQPADDYLPQPEA 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSE-FWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDP 117
           + + GIT +  + +    + F+E     F+E     + +N  +FD         R   DP
Sbjct: 61  VMITGITPQTAQARGVTEAAFAERIHGLFSEPQTCVVGYNNVRFDDEVTRNIFYRNFFDP 120

Query: 118 LDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKH 158
              S          +D +       P                L  L K  G+  +H   H
Sbjct: 121 YGWSWQNGNSRWDLLDVMRACYALRPEGIVWPENDDGFPSFKLEHLTKANGV--AHEQAH 178

Query: 159 GALLDSHLL 167
            A+ D +  
Sbjct: 179 DAMSDVYAT 187


>gi|157161503|ref|YP_001458821.1| exonuclease I [Escherichia coli HS]
 gi|157067183|gb|ABV06438.1| exodeoxyribonuclease I [Escherichia coli HS]
          Length = 475

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|307312423|ref|ZP_07592057.1| Exodeoxyribonuclease I [Escherichia coli W]
 gi|306907594|gb|EFN38097.1| Exodeoxyribonuclease I [Escherichia coli W]
 gi|315061286|gb|ADT75613.1| exonuclease I [Escherichia coli W]
 gi|323378134|gb|ADX50402.1| Exodeoxyribonuclease I [Escherichia coli KO11]
          Length = 475

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|300947322|ref|ZP_07161523.1| exonuclease [Escherichia coli MS 116-1]
 gi|300453074|gb|EFK16694.1| exonuclease [Escherichia coli MS 116-1]
          Length = 475

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|110642225|ref|YP_669955.1| exonuclease I [Escherichia coli 536]
 gi|161486193|ref|NP_754426.2| exonuclease I [Escherichia coli CFT073]
 gi|191170056|ref|ZP_03031610.1| exodeoxyribonuclease I [Escherichia coli F11]
 gi|227887062|ref|ZP_04004867.1| exodeoxyribonuclease I [Escherichia coli 83972]
 gi|110343817|gb|ABG70054.1| exodeoxyribonuclease I [Escherichia coli 536]
 gi|190909572|gb|EDV69157.1| exodeoxyribonuclease I [Escherichia coli F11]
 gi|227835412|gb|EEJ45878.1| exodeoxyribonuclease I [Escherichia coli 83972]
 gi|294493683|gb|ADE92439.1| exodeoxyribonuclease I [Escherichia coli IHE3034]
 gi|307554081|gb|ADN46856.1| C-terminal part of exodeoxyribonuclease I [Escherichia coli ABU
           83972]
          Length = 475

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|170019660|ref|YP_001724614.1| exonuclease I [Escherichia coli ATCC 8739]
 gi|194436340|ref|ZP_03068442.1| exodeoxyribonuclease I [Escherichia coli 101-1]
 gi|169754588|gb|ACA77287.1| Exodeoxyribonuclease I [Escherichia coli ATCC 8739]
 gi|194425068|gb|EDX41053.1| exodeoxyribonuclease I [Escherichia coli 101-1]
          Length = 475

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|237704470|ref|ZP_04534951.1| exodeoxyribonuclease I [Escherichia sp. 3_2_53FAA]
 gi|300974061|ref|ZP_07172435.1| exonuclease [Escherichia coli MS 200-1]
 gi|300986935|ref|ZP_07177911.1| exonuclease [Escherichia coli MS 45-1]
 gi|26108790|gb|AAN80993.1|AE016762_246 Exodeoxyribonuclease I [Escherichia coli CFT073]
 gi|226900836|gb|EEH87095.1| exodeoxyribonuclease I [Escherichia sp. 3_2_53FAA]
 gi|300308958|gb|EFJ63478.1| exonuclease [Escherichia coli MS 200-1]
 gi|300407821|gb|EFJ91359.1| exonuclease [Escherichia coli MS 45-1]
 gi|315285605|gb|EFU45047.1| exonuclease [Escherichia coli MS 110-3]
 gi|315295233|gb|EFU54568.1| exonuclease [Escherichia coli MS 153-1]
 gi|324015752|gb|EGB84971.1| exonuclease [Escherichia coli MS 60-1]
          Length = 491

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 76

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 194

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 195 NAHDAMADVYAT 206


>gi|321478169|gb|EFX89127.1| hypothetical protein DAPPUDRAFT_41461 [Daphnia pulex]
          Length = 231

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 70/203 (34%), Gaps = 32/203 (15%)

Query: 9   KIVFDIETTG------LDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKN-SPEAL 60
            +V D E T        D  N  IIE  AV L  +  K    FQ +  P      +   +
Sbjct: 29  YVVIDYEATCDENHNNFDKNNQEIIEFPAVLLNCHTGKVEAEFQSYCRPVINPLLTKYCI 88

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEW------IAHN-------AK 100
           KL GIT   +   PSF  + + F  +  ++        A        + H        ++
Sbjct: 89  KLTGITQNIVDKAPSFHDVLASFEKWLQKKKLGSEYSFAILTDGSKDVGHFLKRQCVLSQ 148

Query: 101 FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
            D+         I K   +  +  D    AR    ++   LN + K  G        H  
Sbjct: 149 IDIPEYCKYWINIRKSFTNFYQTNDLQYFARL---ANDTVLNIMIKEIGCKF-QGKPHSG 204

Query: 161 LLDSHLLSDVYIKMMVGGSQINF 183
           L D+  ++ V   ++  G+ + F
Sbjct: 205 LDDARNIAYVAQCLLQDGASLVF 227


>gi|254786919|ref|YP_003074348.1| exonuclease I [Teredinibacter turnerae T7901]
 gi|237686146|gb|ACR13410.1| exodeoxyribonuclease I [Teredinibacter turnerae T7901]
          Length = 478

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 78/230 (33%), Gaps = 27/230 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G +   DR  +   V    + +  +    ++  P       P+A+ + GI+ +  
Sbjct: 8   DYETWGANPAVDRPSQFAGVRTDENLNIISDPLVIYCQPPEDIWPQPQAVMVTGISPQIA 67

Query: 71  KDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           +DK        +       E     + +N+ +FD       L R   DP +         
Sbjct: 68  RDKGLPEHEFIARIHREMAEPQTCTVGYNSLRFDDEVTRYALFRNYFDPYEREWRNGNSR 127

Query: 124 ---IDTLSIARRKHPSS----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID + +     P               L +L +  GI  +H++ H A  D      +
Sbjct: 128 WDIIDMVRLTYALRPEGIEWPLVEGRPSFKLENLTQANGI--AHQAAHDAFSDVEAT--I 183

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
            +  ++   Q    ++   D   K +   + ++   K    + +R + E 
Sbjct: 184 ALAKLIKEKQPQL-YQYVRDYSGKRKLAELIDVQSRKPLLHVSSRFSAEH 232


>gi|157870091|ref|XP_001683596.1| phosphotransferase [Leishmania major strain Friedlin]
 gi|68126662|emb|CAJ04503.1| putative phosphotransferase [Leishmania major strain Friedlin]
          Length = 582

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 79/248 (31%), Gaps = 42/248 (16%)

Query: 9   KIVFDIETTG---LDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKN-SPEALKLH 63
            +V D E T        +  +IE   V +   + T    FQ ++ P      S    +L 
Sbjct: 58  YVVLDFEATCEADRRISDAEVIEFPMVLIDARTATPVAEFQRYVRPVKNPVLSRFCTELT 117

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQN--------AEWIAHNAKFDVG-FINAELQRIN 114
           GIT + +     F  ++ E   F  E          +  +     +D+   + A+++   
Sbjct: 118 GITQDMVSRCDPFPVVYCEALQFLAEAGLGDAPPMRSYCVVTCGDWDLKTMLPAQMRVSG 177

Query: 115 --KDPLDPSRIIDTLSIARRKH-------------PSSRNDLNSLCKRYGITISHRSKHG 159
               PL   R  +      +               P   + +  + +  G+ +  R  H 
Sbjct: 178 QQGTPLSFQRWCNLKKRMSQLGFGNGSGCGGGAAPPLGPSGMPDMLQMLGLPLQGRQ-HS 236

Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFF-KEEKKTVPNISLLK----------- 207
            + D   L+     ++  G  I+  F T   R +    +  +P +  L            
Sbjct: 237 GIDDCRNLAAALCTLLRRGLVIDVTFSTAPFRRWHAPTEAQLPALDALPSTLADGAAQHS 296

Query: 208 RDKPLFTR 215
           RD P   R
Sbjct: 297 RDVPPPPR 304


>gi|315296392|gb|EFU55692.1| exonuclease [Escherichia coli MS 16-3]
          Length = 474

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 59/191 (30%), Gaps = 26/191 (13%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-P 57
           M   +K    +  D ET G     DR  +  A+    +++        +  P       P
Sbjct: 1   MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60

Query: 58  EALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINK 115
            A+ + GIT +  + K  + ++  +     F   +      +N +FD         R   
Sbjct: 61  GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFY 120

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP   S          +D +       P                L  L K  GI   H +
Sbjct: 121 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSN 178

Query: 157 KHGALLDSHLL 167
            H A+ D +  
Sbjct: 179 AHDAMADVYAT 189


>gi|307150076|ref|YP_003885460.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
 gi|306980304|gb|ADN12185.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
          Length = 199

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 72/201 (35%), Gaps = 23/201 (11%)

Query: 1   MIRKNK-MRKIVFDIETT------------GLDSKND-RIIEIGAVELLDYSK-TNRTFQ 45
           M   N+    +V D+E T            G   +++  IIEIGAV +          FQ
Sbjct: 1   MSNLNQYDYYLVLDLEATCCELLRSTEGERGTIKRHEMEIIEIGAVMVEKQDLTIVAEFQ 60

Query: 46  VFLCPNGRKNSPEALK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
            F+ P          K L  IT   +   PS+         + +  +         +D  
Sbjct: 61  TFIKPVRYPILTNFCKSLTSITQTQVDQAPSYPEAAILLKKWLSNYSNAVFGSWGDYDRH 120

Query: 105 FINAELQRINKDPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
               +  + ++ P     P   +  L   R+  P  R  +    +  G+T+S  + H  +
Sbjct: 121 QFLQD-SKFHQVPFPIAYPHVNLKQLFSERQGLP-KRYGMKEALELAGLTLSG-THHRGI 177

Query: 162 LDSHLLSDVYIKMMVGGSQIN 182
            D+  ++ +   ++ G  Q+N
Sbjct: 178 DDARNIAKLLPYIL-GRKQLN 197


>gi|154338249|ref|XP_001565349.1| phosphotransferase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 574

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 66/201 (32%), Gaps = 23/201 (11%)

Query: 9   KIVFDIETT---GLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKN-SPEALKLH 63
            IV D+E T   G    +  +IE   V +   + T    FQ ++ P      S    +L 
Sbjct: 52  YIVLDLEATCEAGRRITDAEVIEFPMVLVDPRTATQVAEFQRYVRPVKNPMLSRFCTELT 111

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQN--------AEWIAHNAKFDVGFINAELQRI-- 113
           GIT   +  +  F  ++ E   F  E          +  +     +D+  +     RI  
Sbjct: 112 GITQNMVSHRDPFPVVYCEALQFLAEAGLGDAPPLRSYCVVTCGDWDLKTMLPSQIRISG 171

Query: 114 -NKDPLDPSRIIDTLSIARRK------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
               PL   R  +                    D+  + +  G+    R  H  + D   
Sbjct: 172 QQGTPLSFQRWCNLKKYMSGLGLRDGGERGGPTDMPDMLRILGLPHQGR-HHSGIDDCRN 230

Query: 167 LSDVYIKMMVGGSQINFGFKT 187
           ++ V   ++  G  ++  F T
Sbjct: 231 IAAVLCALLKRGLVVDTTFAT 251


>gi|323183799|gb|EFZ69190.1| exodeoxyribonuclease I [Escherichia coli 1357]
 gi|332092391|gb|EGI97464.1| exodeoxyribonuclease I [Shigella boydii 5216-82]
          Length = 475

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|313682320|ref|YP_004060058.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155180|gb|ADR33858.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 174

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 28/181 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           I+ D ET    +    +IE  A  +           TF  +   +    +  AL +H ++
Sbjct: 2   IILDFETN--SANIHDVIEAAAFRIKRESGAYVIADTFHRYYF-SEYDLNLHALAVHKLS 58

Query: 67  DEF---LKDKPSFSSIFSE---FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +    L+    ++  F+E   F +F        IAHN  F++  +           +  
Sbjct: 59  PDRIKRLRSNVDYAEYFAEDHEFVEFCRGAET-LIAHNIAFELRHLGQ--------LVTF 109

Query: 121 SRIIDTLSIARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            +   T+   ++       +       L   C+ Y I       H AL D     ++   
Sbjct: 110 EKHFCTMKANKKSVGALNIRGSLKNPKLLETCRHYRIDFDEDQYHSALYDVTKTLEILNC 169

Query: 174 M 174
           M
Sbjct: 170 M 170


>gi|331663511|ref|ZP_08364421.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli TA143]
 gi|331059310|gb|EGI31287.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli TA143]
          Length = 474

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 25/187 (13%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALK 61
           K +   +  D ET G     DR  +  A+    +++        +  P       P A+ 
Sbjct: 5   KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64

Query: 62  LHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + GIT +  + K  + ++  +     F   +      +N +FD         R   DP  
Sbjct: 65  ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYA 124

Query: 120 PSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGA 160
            S          +D +       P                L  L K  GI   H + H A
Sbjct: 125 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSNAHDA 182

Query: 161 LLDSHLL 167
           + D +  
Sbjct: 183 MADVYAT 189


>gi|289177467|gb|ADC84713.1| Hypothetical protein BIF_00664 [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 467

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 72/191 (37%), Gaps = 37/191 (19%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQ---------------VFLCP 50
            DIETTG  +  D II++G   +       + +K    +                 F  P
Sbjct: 241 IDIETTGTSAWRDYIIDVGFERMNLQTPAPEGAKARDVYSETDYAADGAYDQSRLSFGVP 300

Query: 51  --NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA--EWIAHNAKFDVGFI 106
                  +P   +L GI    +  +P F   +        E+     ++AHNA F+  F 
Sbjct: 301 LRCAEVANPFIAQLTGIDVTKIAGEPIFDE-WPRMQQALLERLMQQPYVAHNATFEHRFF 359

Query: 107 NAELQRINKDPLD-PSRIIDTLSIARRK---------HPSSRNDLNSLCKRYG-ITISHR 155
            A ++   +   +    I+DT+ ++R           HP   N L +  KR G +  +  
Sbjct: 360 MANVEGYAEAYRNGEITILDTMPMSRHWDAGSVPSPGHPHGDNTLEAYAKRQGALDGNSH 419

Query: 156 SKHGALLDSHL 166
            +H  L D+H+
Sbjct: 420 ERHLGLEDAHI 430


>gi|91072872|gb|ABE07753.1| exodeoxyribonuclease I [Escherichia coli UTI89]
          Length = 491

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 76

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 194

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 195 NAHDAMADVYAT 206


>gi|321468566|gb|EFX79550.1| hypothetical protein DAPPUDRAFT_4269 [Daphnia pulex]
          Length = 199

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 18/192 (9%)

Query: 9   KIVFDIE-TTGL--DSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKL 62
            ++ D E T G   +      IIE  A+ L  +       F  F  P      +    KL
Sbjct: 5   FVIIDFEGTCGFLKNPCGIQEIIEFPAILLNGHNGSIEDEFHSFCQPVLNPSLTNFCKKL 64

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDVG-FINAELQRINK 115
            GIT + +   P F  +F  F ++  +           +  +   D+  F+  + +    
Sbjct: 65  TGITQDAVDKAPLFKDVFVSFEEWLKKNKVIGSYYSFAVVTDDPNDIRQFLQKQCRISEI 124

Query: 116 DPLDPSR-IIDTLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           D     +  I+   I    + +       L ++ +  G     R  H  + D+  ++ + 
Sbjct: 125 DFPTYCQNWINIKIIFAHFYKNGNMQCLSLKNMIRDIGCEFQGR-AHSGIDDARNIASIV 183

Query: 172 IKMMVGGSQINF 183
            +++   + I F
Sbjct: 184 QRLLADRAPITF 195


>gi|242023941|ref|XP_002432389.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212517812|gb|EEB19651.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 289

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 9   KIVFDIETTGL---DSKNDRIIEIGAVELL--------DYSKTNRTFQVFLCPNGRKNSP 57
            IV+D ETTGL   +S   +I E+  +           +  +      +   P  +   P
Sbjct: 7   IIVYDSETTGLPHLESNTTKITELAFMGCEIEHLKNINNLPRVLHKLVLLFNP-MKMILP 65

Query: 58  EALKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAE--WIAHNAK-FDVGFINAELQRI 113
           ++ ++ G+ +E L + KP           F N   +    IAHN   FD   +  +L ++
Sbjct: 66  DSSEITGLENEDLMNIKPFCEEDVQVLIHFINRLPSPVCLIAHNGNKFDFPILQRQLFKL 125

Query: 114 NKDPLDPSRIIDTLSIARRKHP 135
           N    D     D++   +  +P
Sbjct: 126 NLKLPDSVYCADSIKAFQEIYP 147


>gi|316970336|gb|EFV54297.1| conserved hypothetical protein [Trichinella spiralis]
          Length = 747

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 16/171 (9%)

Query: 10  IVFDIETTGLDS---KNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           +V D E T       +   IIE   V   L   +    F  ++ P    N S     L G
Sbjct: 555 LVLDFEATCDQPIQIEPQEIIEFPCVNFSLKEDRIVSQFHSYVRPEVHPNLSSFCTNLTG 614

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ--------NAEWIAHNAKFDVGF-INAELQRINK 115
           I  + + ++P+ + + ++F  +  EQ        +   +     +D+ + +  + + +  
Sbjct: 615 IVQDMVNNQPTLTEVLTQFDGWLAEQQLLTDEQRDKWTMVTCGSWDLNYQLRNQCKWMGH 674

Query: 116 D-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
             PL     I+   IA     +    L ++ +  G+    R  H  + D  
Sbjct: 675 PVPLYFKSWINIKKIACNATGNYPKSLIAMMQSLGVEHEGR-LHSGIDDVK 724


>gi|18496941|ref|NP_569791.1| hypothetical protein TM4_gp57 [Mycobacterium phage TM4]
 gi|4336092|gb|AAD17623.1| gp57 [Mycobacterium phage TM4]
          Length = 177

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 25/181 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEA 59
           M R+     +V D ETTGL      I+E+ AV +   ++    F  F+      +  P A
Sbjct: 1   MTRQ----LVVVDCETTGLH-DGAAILEVAAVNIDTGAEL--HFVPFVTREQLAQAQPMA 53

Query: 60  LKLH-----GITDEFLKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           ++++     GI     +  P  +     +  +        +   N  FD   + A +   
Sbjct: 54  MQMNRYYERGI--WQRRLSPDSTDAAYWKLANMLA--GNTFGGSNPAFDSRLLAAAMP-- 107

Query: 114 NKDPLDPSRIIDTLSIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +  P    R+ D  +         P     L+++C+R G+T+S R  H AL D+H  +  
Sbjct: 108 DGAPEWHHRLADLAAFTAGKLNLDPVELPGLDAVCERLGVTVSDR--HSALADAHATATC 165

Query: 171 Y 171
           +
Sbjct: 166 F 166


>gi|256113257|ref|ZP_05454125.1| Exonuclease [Brucella melitensis bv. 3 str. Ether]
 gi|265994669|ref|ZP_06107226.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|262765782|gb|EEZ11571.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
          Length = 203

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 67/194 (34%), Gaps = 27/194 (13%)

Query: 10  IVFDIE---TTGLDSKNDR--------IIEIGAVEL--LDYSKTNRTFQVFLCPNGR--- 53
           I+FD E   T G  S+           I +IGAV++   +      TF+ ++ P+ R   
Sbjct: 5   IIFDCEFLCTKGSQSRFWCAAIDPDPVIAQIGAVKIGLENELPILETFKAYVTPHDRYGA 64

Query: 54  --KNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
               +P    L GIT+E + +D     +  ++   F     A + +     ++  I    
Sbjct: 65  RYAIAPYFTDLTGITEEQISRDGKPLKTALNDLDSF--SDGATFWSWGKD-ELNMIAISC 121

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDL-----NSLCKRYGITISHRSKHGALLDSH 165
                 P  P+   D              DL     N L   YG+       H AL D+ 
Sbjct: 122 YVEGIAPPIPAPRFDNAVKLLLVAGMPVEDLARTPSNKLADYYGLEHPELQGHDALDDAR 181

Query: 166 LLSDVYIKMMVGGS 179
            +      ++  G 
Sbjct: 182 SIGYTLQYLLSSGK 195


>gi|195027065|ref|XP_001986404.1| GH20546 [Drosophila grimshawi]
 gi|193902404|gb|EDW01271.1| GH20546 [Drosophila grimshawi]
          Length = 288

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 61/198 (30%), Gaps = 30/198 (15%)

Query: 10  IVFDIETTG------LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           I  D E T          +   IIE    +  L   K    F  ++ P    + S    +
Sbjct: 73  IAVDFEATCWEKQAPPQWREAEIIEFPAVLVNLKTGKIEAEFHKYIMPFESPRLSTYCTE 132

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAHNAKFDV 103
           L GI  + +       +    F ++  ++                  N  ++     +D 
Sbjct: 133 LTGIDQKTVDSGVPLQTALMMFHEWLRKELRARNLLLPKMAKSNILGNCAFVTW-TDWDF 191

Query: 104 GFINA--ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           G        ++  +     ++ ID  +I R  +     +        G+    R  H  +
Sbjct: 192 GICLHKECSRKRMRKAPYFNQWIDVRAIYREWYKYRPCNFTDALSHVGLAFEGR-AHSGI 250

Query: 162 LDSHLLSDVYIKMMVGGS 179
            D+  L  +  KM+  G+
Sbjct: 251 DDAKNLGALMCKMVRDGA 268


>gi|307177230|gb|EFN66425.1| DNA polymerase III polC-type [Camponotus floridanus]
          Length = 141

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 20/115 (17%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K   + +VFD+ET+G    +D I+++ A+   +       F V++ P  +     A +++
Sbjct: 35  KEDYKMVVFDLETSGRKKNSD-ILQLAAIVQEN------VFSVYVTPT-QDVDKFASEIN 86

Query: 64  GITDE----FLKDKP----SFSSIFSEFWDFF----NEQNAEWIAHNAKFDVGFI 106
           G+ +     +L+++     S       F+ F       +    IAHNA FD+ F 
Sbjct: 87  GLHNIGRELYLRNEKLLTLSMVDALQAFYAFLCKVGKSKKCILIAHNASFDISFF 141


>gi|260598502|ref|YP_003211073.1| exonuclease I [Cronobacter turicensis z3032]
 gi|260217679|emb|CBA32024.1| Exodeoxyribonuclease I [Cronobacter turicensis z3032]
          Length = 480

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 52/178 (29%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G     DR  +  A+    +++        +  P       PEA+ + GIT +  
Sbjct: 19  DYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLITGITPQVA 78

Query: 71  KD-KPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           +    + +         F       + +N  +FD         R   DP   S       
Sbjct: 79  RARGENEADFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQNDNSR 138

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L    GI   H + H A+ D +  
Sbjct: 139 WDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIE--HANAHDAMADVYAT 194


>gi|162138417|ref|YP_541284.2| exonuclease I [Escherichia coli UTI89]
 gi|307626441|gb|ADN70745.1| exonuclease I [Escherichia coli UM146]
          Length = 475

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|171742833|ref|ZP_02918640.1| hypothetical protein BIFDEN_01948 [Bifidobacterium dentium ATCC
           27678]
 gi|283456129|ref|YP_003360693.1| hypothetical protein BDP_1248 [Bifidobacterium dentium Bd1]
 gi|171278447|gb|EDT46108.1| hypothetical protein BIFDEN_01948 [Bifidobacterium dentium ATCC
           27678]
 gi|283102763|gb|ADB09869.1| Conserved hypothetical protein [Bifidobacterium dentium Bd1]
          Length = 443

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 9/147 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA-----VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +  D+ETTG     D II+ G           +    RT+ +         S    +L G
Sbjct: 232 VGIDLETTGTSVNQDYIIDAGWELFDMAMGRAFEAQRRTYGISKQRERLGISRNITELTG 291

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLD-PSR 122
           IT   +  +  F    +              +AHNA F+  F+    +   +   D   R
Sbjct: 292 ITTADVSGRIPFQEDANAQKTIITALDGRIMVAHNANFERSFLIGNCEGYAEALRDGRIR 351

Query: 123 IIDTLSIARRKHPS--SRNDLNSLCKR 147
           I+D++ +A+    +      L+   +R
Sbjct: 352 IVDSMKVAQHSEDARVQGFKLDDYARR 378


>gi|30248680|ref|NP_840750.1| exonuclease I [Nitrosomonas europaea ATCC 19718]
 gi|30180275|emb|CAD84582.1| exodeoxyribonuclease I [Nitrosomonas europaea ATCC 19718]
          Length = 496

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 70/227 (30%), Gaps = 37/227 (16%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET+G   + DR  +   +   +  ++      ++  P   +   PEA  L GIT +  
Sbjct: 12  DYETSGATPRWDRPFQFAGLRTDEALNEIGDPLVIYCQPARDRLPHPEACLLTGITPQM- 70

Query: 71  KDKPSFSSIFSEFWDFFNEQ----NAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI-- 123
            +         EF    + Q        + +N  +FD       L R   DP        
Sbjct: 71  AEARGLPE--PEFIALIHAQLAQPGTCGVGYNTLRFDDEVTRFTLYRNFYDPYAREWQSG 128

Query: 124 ---IDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
               D + +AR                       L  +    G+   H S H AL D   
Sbjct: 129 NSRWDVIDLARMTFALRPEGINWPINGEGKPSFRLEDITTANGLV--HDSAHDALSDVRA 186

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
                 +++       + +      F   +K+   N+  +K   P+ 
Sbjct: 187 T-IALARLLRAQQPRLYDW-----LFRLRDKRAAGNLLDMKTHAPVL 227


>gi|260580789|ref|ZP_05848615.1| exonuclease I [Haemophilus influenzae RdAW]
 gi|260092606|gb|EEW76543.1| exonuclease I [Haemophilus influenzae RdAW]
          Length = 473

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 25/180 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE 68
           ++D E+ G++   DR  +   +    D++        +          PEA+ + GIT +
Sbjct: 9   IYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGITPQ 68

Query: 69  FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--- 123
              +K  S     +     F++ N   + +N  ++D         R   DP + S     
Sbjct: 69  ECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGN 128

Query: 124 -----IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                +D +       P                L  L K    +I H + H A+ D +  
Sbjct: 129 SRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKA--NSIEHENAHDAMADVYAT 186


>gi|28898216|ref|NP_797821.1| hypothetical protein VP1442 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153836508|ref|ZP_01989175.1| exonuclease KapD [Vibrio parahaemolyticus AQ3810]
 gi|260361750|ref|ZP_05774777.1| exonuclease KapD [Vibrio parahaemolyticus K5030]
 gi|260878557|ref|ZP_05890912.1| exonuclease KapD [Vibrio parahaemolyticus AN-5034]
 gi|260898982|ref|ZP_05907423.1| exonuclease KapD [Vibrio parahaemolyticus Peru-466]
 gi|260902016|ref|ZP_05910411.1| exonuclease KapD [Vibrio parahaemolyticus AQ4037]
 gi|28806433|dbj|BAC59705.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149750106|gb|EDM60851.1| exonuclease KapD [Vibrio parahaemolyticus AQ3810]
 gi|308087959|gb|EFO37654.1| exonuclease KapD [Vibrio parahaemolyticus Peru-466]
 gi|308091327|gb|EFO41022.1| exonuclease KapD [Vibrio parahaemolyticus AN-5034]
 gi|308107728|gb|EFO45268.1| exonuclease KapD [Vibrio parahaemolyticus AQ4037]
 gi|308113624|gb|EFO51164.1| exonuclease KapD [Vibrio parahaemolyticus K5030]
 gi|328473772|gb|EGF44607.1| hypothetical protein VP10329_13955 [Vibrio parahaemolyticus 10329]
          Length = 176

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 8/178 (4%)

Query: 4   KNKMRKIVFDIETTGLD----SKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE 58
            N  R + FD+E          +   IIE+G  E+ L   +  +  Q ++ P   + S  
Sbjct: 1   MNHNRIVCFDLEMCCWSENGVGRTGEIIEVGLAEIDLSKGEIVKRAQYYVKPEHDEVSLF 60

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             +L GIT   + K     + +       F  +N  + +   + DV  +    Q+  + P
Sbjct: 61  CAELTGITPRKIEKQGRPLAEVIKSMIKNFGGRNKIYASW-GRDDVILLEECKQKGIEAP 119

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 + TL   + +    R    +  +  GI    R  H   +D+H L+ + + M+
Sbjct: 120 FTEFINLATLYRIQNRLKDKRIGHRAAQEAKGIEWEGRQ-HSGYVDAHNLAKLALTML 176


>gi|302755050|ref|XP_002960949.1| hypothetical protein SELMODRAFT_73963 [Selaginella moellendorffii]
 gi|300171888|gb|EFJ38488.1| hypothetical protein SELMODRAFT_73963 [Selaginella moellendorffii]
          Length = 397

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 74/220 (33%), Gaps = 13/220 (5%)

Query: 9   KIVFDIETTGLDSKN--DRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHG 64
            +V D E T   +      IIE    +  +       +FQ ++ P      +    +L G
Sbjct: 112 FVVIDFEATCDSTVFFPQEIIEFPSVLVAVHSLSVEDSFQTYVKPTFNPQLTDFCKRLTG 171

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAE----WIAHNAKFDVGFINAELQRINK--DPL 118
           I    + +  + +    +   +  ++  +     +     +D   +     R+     P 
Sbjct: 172 IEQTQVDNGMALAEALVKHDKWLEDKGVKSKRFGVITWTDWDCKVMLDFECRLKGLTKPS 231

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             ++ I+  S  + K    + +L    +  G+    R  H  L D+   + + ++++  G
Sbjct: 232 YFNKWINLKSCFQEKF-GDKFNLKKAVQHAGLQWQGRE-HCGLDDAKNTASLAMELVRRG 289

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
            QI F       R       +   +  LK+      R + 
Sbjct: 290 MQIGFTQH-QSSRKPAITNISSEFMPKLKKILEALPRSSD 328


>gi|163800755|ref|ZP_02194655.1| hypothetical protein 1103602000593_AND4_00793 [Vibrio sp. AND4]
 gi|159175104|gb|EDP59901.1| hypothetical protein AND4_00793 [Vibrio sp. AND4]
          Length = 176

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 8/178 (4%)

Query: 4   KNKMRKIVFDIETTGLD----SKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE 58
            N  R + FD+E    +     +   IIE+G  EL L   +  +  Q ++ P   + S  
Sbjct: 1   MNHNRIVCFDLEMCCWNENGVGRTGEIIEVGLAELDLSKGEIVKRAQYYVKPEHDEVSLF 60

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             +L GIT   + K       +       F  +N  + +   + DV  +    Q+    P
Sbjct: 61  CAELTGITPRKIEKQGRPLEEVLKSMLKNFGGRNKIYASW-GRDDVILLEECQQKGIDAP 119

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 + TL   + +    R    +  +  GI    R  H   +D++ L+ + + M+
Sbjct: 120 FTEFINLATLYRIQNRLKDKRIGHKAAQEAKGIVWEGRQ-HSGYVDAYNLAKLALTML 176


>gi|195486290|ref|XP_002091443.1| GE12237 [Drosophila yakuba]
 gi|194177544|gb|EDW91155.1| GE12237 [Drosophila yakuba]
          Length = 223

 Score = 63.3 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 60/197 (30%), Gaps = 28/197 (14%)

Query: 10  IVFDIETTG------LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           I  D E T          +   IIE    +  L   K    F  ++ P    + S    +
Sbjct: 8   IAVDFEATCWEKQAPPQWREAEIIEFPAVLVNLKTGKIEAEFHKYILPFESPRLSTYCTE 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAHN-AKFD 102
           L GI  + +       +    F ++  ++                  N  ++      F 
Sbjct: 68  LTGIQQKTVDSGVPLQTALMMFHEWLRKELRARNLTLPKMNKSNILGNCAFVTWTDWDFG 127

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           +       ++  +     ++ ID  +I R  +     +        G+    R  H  + 
Sbjct: 128 ICLAKECTRKRMRKAAYFNQWIDVRAIYRSWYQYRPCNFTDALSHVGLAFEGR-AHSGID 186

Query: 163 DSHLLSDVYIKMMVGGS 179
           D+  L  +  KM+  G+
Sbjct: 187 DAKNLGALMCKMVRDGA 203


>gi|307130832|ref|YP_003882848.1| exonuclease I [Dickeya dadantii 3937]
 gi|306528361|gb|ADM98291.1| exonuclease I [Dickeya dadantii 3937]
          Length = 476

 Score = 62.9 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 57/178 (32%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFL 70
           D ET G     DR  +   V   L+++       ++  P +     PEA+ + GIT +  
Sbjct: 14  DYETFGKHPAKDRPAQFAGVRTDLNFNVIGEPVVIYCQPTDDYLPDPEAVMITGITPQVA 73

Query: 71  KDKPS-FSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           + + +  +       + F+      + +N  +FD         R   DP   S       
Sbjct: 74  QSRGTREAEFARHIHEAFSAPGTCIMGYNNIRFDDEVSRNLFYRNFYDPYAYSWQNGNSR 133

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D L       P                L  L +  G+   H   H A+ D +  
Sbjct: 134 WDLLDMLRACYALRPDGIVWPENDDGFPSFRLEHLTRANGVE--HTQAHDAMSDVYAT 189


>gi|323940907|gb|EGB37095.1| exonuclease [Escherichia coli E482]
          Length = 474

 Score = 62.9 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 25/187 (13%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALK 61
           K +   +  D ET G     DR  +  A+    +++        +  P       P A+ 
Sbjct: 5   KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64

Query: 62  LHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + GIT +  + K  + ++  +     F   +      +N +FD         R   DP  
Sbjct: 65  ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYA 124

Query: 120 PSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGA 160
            S          +D +       P                L  L K  GI   H + H A
Sbjct: 125 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSNAHDA 182

Query: 161 LLDSHLL 167
           + D +  
Sbjct: 183 MADVYAT 189


>gi|323936909|gb|EGB33192.1| exonuclease [Escherichia coli E1520]
          Length = 474

 Score = 62.9 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 25/187 (13%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALK 61
           K +   +  D ET G     DR  +  A+    +++        +  P       P A+ 
Sbjct: 5   KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64

Query: 62  LHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + GIT +  + K  + ++  +     F   +      +N +FD         R   DP  
Sbjct: 65  ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 124

Query: 120 PSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGA 160
            S          +D +       P                L  L K  GI   H + H A
Sbjct: 125 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSNAHDA 182

Query: 161 LLDSHLL 167
           + D +  
Sbjct: 183 MADVYAT 189


>gi|226945053|ref|YP_002800126.1| Exonuclease [Azotobacter vinelandii DJ]
 gi|226719980|gb|ACO79151.1| Exonuclease [Azotobacter vinelandii DJ]
          Length = 185

 Score = 62.9 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 10/173 (5%)

Query: 8   RKIVFDIETT---GLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKL 62
           + +V D+E T   G     D  IIEIGA  +         F+ F+ P  R   +    +L
Sbjct: 3   KWLVIDLEATTDEGGWPVADMEIIEIGASLVNRNGHELDHFKRFVRPLRRPLLTLFCQEL 62

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINK--DPL 118
             I    +        ++ +F  +            +   +D   +  E +R       +
Sbjct: 63  THIAQSDIDSATPLPMVWEQFEHWLAPYRPRLAGWTSWGDYDRRQLEQEWRRHGLASSLI 122

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             S +      A  +       L +  +  G++     +H AL D+   + + 
Sbjct: 123 PLSHVNLKQRFADTRQLKRPVGLRTALQLAGMSF-QGQQHRALEDARNTARLL 174


>gi|329895211|ref|ZP_08270875.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC3088]
 gi|328922449|gb|EGG29791.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC3088]
          Length = 480

 Score = 62.9 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 56/181 (30%), Gaps = 25/181 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITD-EF 69
           D ET G     DR  +   +    + +       V+  P       P A+ + GIT  E 
Sbjct: 9   DYETFGASPAKDRPCQFAGLRTDANLNVIGDPLVVYSRPTPDYLPNPMAVLVTGITPQEA 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------DP 120
           L+   S     +      ++     + +N+ +FD       L R   DP           
Sbjct: 69  LQKGLSEREFITRIHAELSQPLTCGVGYNSLRFDDEVTRYTLYRNFFDPYGREYQDGNSR 128

Query: 121 SRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             +ID +  +    P                L  L    GI   H   H AL+D     +
Sbjct: 129 WDLIDLVRASYALRPEGIEWPMSDDGFMSAKLERLTAANGIE--HAGAHDALVDVKATIE 186

Query: 170 V 170
           +
Sbjct: 187 L 187


>gi|319942625|ref|ZP_08016933.1| hypothetical protein HMPREF9464_02152 [Sutterella wadsworthensis
           3_1_45B]
 gi|319803804|gb|EFW00736.1| hypothetical protein HMPREF9464_02152 [Sutterella wadsworthensis
           3_1_45B]
          Length = 502

 Score = 62.9 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 63/203 (31%), Gaps = 46/203 (22%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDY-----SKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
           D ET G+D + DR  +                T   F  +  P   +  +PE+  L GIT
Sbjct: 14  DYETFGVDPRKDRPAQFAGRRTRLDFSPLSGDTGEIF--YCRPTEDQLPNPESCLLTGIT 71

Query: 67  DEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAK-FD---VGFINAE------------ 109
            ++  +K           W+  N      I +N   FD     F+               
Sbjct: 72  PQYCAEKGVCESEFADLIWERLNTPGTVSIGYNTLGFDDEVNRFLFWRNFLDPYTHSWAK 131

Query: 110 -LQRINKDPLDPSRII---DTLSIARR------KHPSSR------NDLNSLCKRYGITIS 153
              R +  P+  +      DT+   R       K+P +         L  L K  GI   
Sbjct: 132 GCSRWDLFPVVCAAWALRGDTIKWPRWEEIDPIKYPKAEGRKGVCFKLEFLTKANGIE-- 189

Query: 154 HRSKHGALLDSHLL---SDVYIK 173
           H   H AL D       + +  +
Sbjct: 190 HGHAHDALSDVEATIGMAKLLAE 212


>gi|324119041|gb|EGC12930.1| exonuclease [Escherichia coli E1167]
          Length = 474

 Score = 62.9 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 25/187 (13%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALK 61
           K +   +  D ET G     DR  +  A+    +++        +  P       P A+ 
Sbjct: 5   KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64

Query: 62  LHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + GIT +  + K  + ++  +     F   +      +N +FD         R   DP  
Sbjct: 65  ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYA 124

Query: 120 PSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGA 160
            S          +D +       P                L  L K  GI   H + H A
Sbjct: 125 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSNAHDA 182

Query: 161 LLDSHLL 167
           + D +  
Sbjct: 183 MADVYAT 189


>gi|170050189|ref|XP_001859612.1| oligoribonuclease [Culex quinquefasciatus]
 gi|167871717|gb|EDS35100.1| oligoribonuclease [Culex quinquefasciatus]
          Length = 214

 Score = 62.9 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 30/175 (17%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL-- 62
           ++   +  D+E TGL+ + DRIIEI  +               +     +      +   
Sbjct: 34  SQHNLVWIDLEMTGLNVETDRIIEIACIVTNKNLDVLERGPDIVIHEPAQIMEAMNEWCK 93

Query: 63  -----HGITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAELQRI 113
                 G+T      K + +    +  DF      E+      ++   D  F+N  + R+
Sbjct: 94  VNHAKTGLTQAVADSKVTLAEAEQQVLDFVKRHCPEKACPLAGNSIYMDRMFLNRYMPRL 153

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS-----KHGALLD 163
           N         + T+                +CKR+  +I   +      H AL D
Sbjct: 154 NDYLHYRIVDVSTIKE--------------VCKRWNGSIFSHAPPKKLAHRALED 194


>gi|41152197|ref|NP_957038.1| oligoribonuclease, mitochondrial [Danio rerio]
 gi|37590357|gb|AAH59540.1| Small fragment nuclease [Danio rerio]
          Length = 199

 Score = 62.9 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 22/175 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59
           M +    R +  D+E TGLD + D+IIE+  +    D +       + +          +
Sbjct: 1   MSQTQAQRMVWVDLEMTGLDIEKDQIIEMACIVTDSDLNVIAEGPNLIINQPDDLLDGMS 60

Query: 60  ---LKLHGIT--DEFLKDK-PSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAE 109
               + HG +   + ++D   +      EF  F  +           ++   D  F++  
Sbjct: 61  DWCKEHHGKSGLTQAVRDSHITLQQAEYEFLSFIRQHTPPGVCPLAGNSVHADKKFLDKY 120

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + +           + T+  ++RR +P          + Y +    +S H AL D
Sbjct: 121 MPQFMHHLHYRIIDVSTIKELSRRWYP----------EEYNLAPQKKSSHRALDD 165


>gi|198477158|ref|XP_002136734.1| GA23278 [Drosophila pseudoobscura pseudoobscura]
 gi|198145039|gb|EDY71751.1| GA23278 [Drosophila pseudoobscura pseudoobscura]
          Length = 223

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 70/216 (32%), Gaps = 28/216 (12%)

Query: 10  IVFDIETTGLDSKND------RIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALK 61
           I  D E T  +++         IIE    +  L        F  ++ P  +   S     
Sbjct: 8   ISVDFEATCWENQPAQQFRLSEIIEFPAILVNLKTGMVEAEFHKYVMPVEKPQLSEYCTS 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAH-NAKFD 102
           L GI  + ++      +  + F ++  ++                  N  ++   N  F 
Sbjct: 68  LTGIQQKTVEAGVPLQTALNSFIEWLKKELSARNLVLPKMSMTNPQGNCFFVTWTNWDFG 127

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           +       ++  + P   ++ ID  +I ++ +       N+  +   +T   R  H  + 
Sbjct: 128 ICLAKECARKNIRKPTCFNQWIDAKAIYQKWYKYRPFSFNNALEHVRLTFQGR-AHSGID 186

Query: 163 DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
           D+  L  +  KM   G+  +        +   E + 
Sbjct: 187 DAKNLGSLICKMFRDGAPFSITKDLTPHKELNENRG 222


>gi|149280749|ref|ZP_01886857.1| hypothetical protein PBAL39_05951 [Pedobacter sp. BAL39]
 gi|149228496|gb|EDM33907.1| hypothetical protein PBAL39_05951 [Pedobacter sp. BAL39]
          Length = 181

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 68/184 (36%), Gaps = 12/184 (6%)

Query: 2   IRKNKMRKIVFDIETT---GLDSKN--DRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKN 55
           +R      ++ DIE T   G +     + IIEIG A+  +   + +    + + P   + 
Sbjct: 1   MRGKLDEILIVDIEATCWEGSNPDGMENDIIEIGIALLNVQTGEISENRGILVKPERSEV 60

Query: 56  SPEALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--R 112
                KL  IT +  + D  +F    S     ++ QN  W A    +D+     +     
Sbjct: 61  GEFCTKLTTITPQMIIDDGVTFREACSILKKEYSSQNRAW-ASFGAYDLKQFQRQCAAYN 119

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           I          + TL   +++    +    +L +   I +   + H  + D+  ++ +  
Sbjct: 120 IGYPFGPSHVNVKTLFALKKRLSQEQGMSGAL-EMLNIPLEG-THHRGVDDAKNIAKILR 177

Query: 173 KMMV 176
            ++ 
Sbjct: 178 WILE 181


>gi|323948385|gb|EGB44370.1| exonuclease [Escherichia coli H120]
          Length = 474

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 25/187 (13%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALK 61
           K +   +  D ET G     DR  +  A+    +++        +  P       P A+ 
Sbjct: 5   KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64

Query: 62  LHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + GIT +  + K  + ++  +     F   +      +N +FD         R   DP  
Sbjct: 65  ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYA 124

Query: 120 PSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGA 160
            S          +D +       P                L  L K  GI   H + H A
Sbjct: 125 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSNAHDA 182

Query: 161 LLDSHLL 167
           + D +  
Sbjct: 183 MADVYAT 189


>gi|331668711|ref|ZP_08369559.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli TA271]
 gi|331063905|gb|EGI35816.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli TA271]
          Length = 474

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 25/187 (13%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALK 61
           K +   +  D ET G     DR  +  A+    +++        +  P       P A+ 
Sbjct: 5   KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64

Query: 62  LHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + GIT +  + K  + ++  +     F   +      +N +FD         R   DP  
Sbjct: 65  ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYA 124

Query: 120 PSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGA 160
            S          +D +       P                L  L K  GI   H + H A
Sbjct: 125 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSNAHDA 182

Query: 161 LLDSHLL 167
           + D +  
Sbjct: 183 MADVYAT 189


>gi|323961779|gb|EGB57380.1| exonuclease [Escherichia coli H489]
          Length = 474

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 25/187 (13%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALK 61
           K +   +  D ET G     DR  +  A+    +++        +  P       P A+ 
Sbjct: 5   KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64

Query: 62  LHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + GIT +  + K  + ++  +     F   +      +N +FD         R   DP  
Sbjct: 65  ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYA 124

Query: 120 PSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGA 160
            S          +D +       P                L  L K  GI   H + H A
Sbjct: 125 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSNAHDA 182

Query: 161 LLDSHLL 167
           + D +  
Sbjct: 183 MADVYAT 189


>gi|229366424|gb|ACQ58192.1| Oligoribonuclease, mitochondrial precursor [Anoplopoma fimbria]
          Length = 266

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEAL---KL 62
            R +  D+E TGLD + D+IIE+  +    + +       + +          +    + 
Sbjct: 72  QRMVWVDLEMTGLDIEKDQIIEMACIITDSNLNILAEGPNLIINQPNELLEGMSEWCKEH 131

Query: 63  HGIT--DEFLKD-KPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAELQRINK 115
           HG +   + ++D K +      EF  F  +           ++   D  F++  + +   
Sbjct: 132 HGKSGLTQAVQDSKITLEQAEYEFLSFVRQHTPPGQCPLAGNSVHADKRFLDKYMPQFMY 191

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR  P          + Y +    ++ H AL D
Sbjct: 192 HLHYRIIDVSTIKELCRRWFP----------EEYKMVPHKKAAHRALGD 230


>gi|323972839|gb|EGB68038.1| exonuclease [Escherichia coli TA007]
          Length = 474

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 25/187 (13%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALK 61
           K +   +  D ET G     DR  +  A+    +++        +  P       P A+ 
Sbjct: 5   KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64

Query: 62  LHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + GIT +  + K  + ++  +     F   +      +N +FD         R   DP  
Sbjct: 65  ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYA 124

Query: 120 PSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGA 160
            S          +D +       P                L  L K  GI   H + H A
Sbjct: 125 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSNAHDA 182

Query: 161 LLDSHLL 167
           + D +  
Sbjct: 183 MADVYAT 189


>gi|323956180|gb|EGB51931.1| exonuclease [Escherichia coli H263]
          Length = 474

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 25/187 (13%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALK 61
           K +   +  D ET G     DR  +  A+    +++        +  P       P A+ 
Sbjct: 5   KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64

Query: 62  LHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + GIT +  + K  + ++  +     F   +      +N +FD         R   DP  
Sbjct: 65  ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYA 124

Query: 120 PSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGA 160
            S          +D +       P                L  L K  GI   H + H A
Sbjct: 125 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSNAHDA 182

Query: 161 LLDSHLL 167
           + D +  
Sbjct: 183 MADVYAT 189


>gi|323497579|ref|ZP_08102596.1| hypothetical protein VISI1226_22170 [Vibrio sinaloensis DSM 21326]
 gi|323317328|gb|EGA70322.1| hypothetical protein VISI1226_22170 [Vibrio sinaloensis DSM 21326]
          Length = 176

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 66/184 (35%), Gaps = 22/184 (11%)

Query: 4   KNKMRKIVFDIE----------TTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNG 52
            N  R + FD+E          TTG       IIE+G  E+ L   +  +  Q ++ P  
Sbjct: 1   MNHNRIVCFDLEMCCWNENGVGTTG------EIIEVGLAEIDLAKGEIVKRAQYYVKPEN 54

Query: 53  RKNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            + S   ++L GIT   + K       +       F   N  + +     D   +  E Q
Sbjct: 55  DEVSMFCVELTGITPRKIEKQGRPLEEVLKSMVKNFGGSNKIFAS--WGRDDLVLAQECQ 112

Query: 112 RINKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
               + P      + TL   + +    R    +  +  GI    R  H   +D++ L+ +
Sbjct: 113 DKGIEMPFKEFINLATLYRIQNRLKDKRIGHKAAQESKGIEWEGRQ-HSGYVDAYNLAKL 171

Query: 171 YIKM 174
            + M
Sbjct: 172 ALTM 175


>gi|294650870|ref|ZP_06728217.1| DNA polymerase III, epsilon subunit [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292823288|gb|EFF82144.1| DNA polymerase III, epsilon subunit [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 225

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 87/232 (37%), Gaps = 40/232 (17%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVE--LLDYSK-TNRTF---QVFLCPNGRKNSPEAL 60
           M  I+ D ET      N   IEI  V     +      + +   + F CP     S  A+
Sbjct: 1   MSAIILDTET---HDMNGYPIEIAHVPVSFEEGVLFVEKKYAFDEYFSCPE--PISYGAM 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLD 119
            +H I +  +  K S+ +       F   +  +++  HN  +D+  I    + IN     
Sbjct: 56  AVHHILESDIAGKASYET-------FRLPEGIQFVIGHNVDYDIQAIKMADKTINV---- 104

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH-------RSKHGALLDSHLLSDVYI 172
             + I TL++AR   P   ++L++L   Y +T          R+ H A  D  L   V +
Sbjct: 105 --KAICTLALARMVWPDDAHNLSALI--YKLTNGSEKARESIRNTHNAKQDVLLTG-VLL 159

Query: 173 KMMVGGSQINFGFKTNEDRF-FKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           K +        G K  +  + F E+ +   +++  K        I  + +  
Sbjct: 160 KQICKV----LGVKDMQSLYLFSEQARIPTHLTFGKHKGTAIKDIPADYVTW 207


>gi|239994498|ref|ZP_04715022.1| exodeoxyribonuclease I [Alteromonas macleodii ATCC 27126]
          Length = 476

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVF-LCPNGRKNSPEALKLHGITDEF- 69
           D ET G   + D   +  AV   +D +   +   +     N     PEA  + GIT +  
Sbjct: 10  DFETFGTSPQKDLPCQFAAVRTDMDLNVIGKPINIMSAIANDYLPHPEACLVTGITPQQT 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           ++D  + +   +  +   +  N   +  N+ +FD       F        +++  + +  
Sbjct: 70  IRDGSNEADFAARIYQEMSTPNTCSVGFNSIRFDDEVSRYLFYRNFYDPYSREWRNGNSR 129

Query: 124 IDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            D + +AR  +               +    L +L     I   H + H AL D +  
Sbjct: 130 WDIIDLARACYALRPDGINWPRREDGAPSFKLEALTAANNI--GHENAHDALSDVYAT 185


>gi|118098336|ref|XP_424602.2| PREDICTED: similar to Exonuclease domain containing 1 [Gallus
           gallus]
          Length = 660

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 64/196 (32%), Gaps = 28/196 (14%)

Query: 10  IVFDIETTG-LDSKNDR--IIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           +V D E+T   D++  R  IIE    +      +    F  F+ P  +   S     L G
Sbjct: 25  LVLDFESTCWRDARQRRPEIIEFPAVLLNAATGRIEAEFHTFVQPQEQPVLSEFCTTLTG 84

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHNAKFDV 103
           +T + + +        S+F  +  E                     +   ++        
Sbjct: 85  VTQKQVDEGVPLHICLSQFLKWLQEIQKEKKILFSSDIPRNAIPEAKLCTFVTWTDWDLG 144

Query: 104 GFINAELQRINK-DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
             ++ E +R     P   +  ID  +  R  +      L+   +  G+    R  H  L 
Sbjct: 145 VCLHYECKRKQLWKPDIFNSWIDLKATYRAFYNRKPKGLSGALQYVGLAFVGRE-HSGLD 203

Query: 163 DSHLLSDVYIKMMVGG 178
           DS   + +  +++  G
Sbjct: 204 DSRNTARLAWRLICDG 219


>gi|304558543|gb|ADM41207.1| Exodeoxyribonuclease I [Edwardsiella tarda FL6-60]
          Length = 475

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 52/178 (29%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLHGITDE-F 69
           D ET G     DR  +   V            QVF C   +     P+A+ + GIT +  
Sbjct: 14  DYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRLADDYLPQPDAVMITGITPQTA 73

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDP----------- 117
           L      +         F+      + +N  +FD         R   DP           
Sbjct: 74  LAQGGCEAEFAERIHQMFSVPGTCVVGYNNIRFDDEVSRNLFYRNFFDPYAYSWQNGNSR 133

Query: 118 ---LDPSRIIDTLSIARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              LD  R    L       P          L  L +  GI   H + H A+ D +  
Sbjct: 134 WDLLDVVRTCYALRHEGIVWPENEQGLPSFKLEHLSQANGIE--HSNAHDAMADVYAT 189


>gi|198477156|ref|XP_002136733.1| GA23277 [Drosophila pseudoobscura pseudoobscura]
 gi|198145038|gb|EDY71750.1| GA23277 [Drosophila pseudoobscura pseudoobscura]
          Length = 223

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 70/216 (32%), Gaps = 28/216 (12%)

Query: 10  IVFDIETTGLDSKND------RIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALK 61
           I  D E T  +++         IIE    +  L        F  ++ P  +   S     
Sbjct: 8   ISVDFEATCWENQPAQQFRLSEIIEFPAILVNLKTGMVEAEFHKYVMPVEKPQLSEYCTS 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAH-NAKFD 102
           L GI  + ++      +  + F ++  ++                  N  ++   N  F 
Sbjct: 68  LTGIQQKTVEAGVPLQTALNSFIEWLKKELSARNLVLPKMSMTNPQGNCFFVTWTNWDFG 127

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           +       ++  + P   ++ ID  SI ++ +       N+  +   +T   R  H  + 
Sbjct: 128 ICLAKECARKNIRKPTCFNQWIDAKSIYQKWYKYRPFSFNNALEHVRLTFQGR-AHSGID 186

Query: 163 DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
           D+  L  +  KM   G+  +        +   E + 
Sbjct: 187 DAKNLGSLICKMFRDGAPFSITKDLTPHKELNENRG 222


>gi|322514439|ref|ZP_08067481.1| exodeoxyribonuclease I [Actinobacillus ureae ATCC 25976]
 gi|322119646|gb|EFX91708.1| exodeoxyribonuclease I [Actinobacillus ureae ATCC 25976]
          Length = 515

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 73/222 (32%), Gaps = 28/222 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEA 59
           + KN +    +D E+ G+    DR  +   +    D++        +         SPEA
Sbjct: 1   MNKN-LTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGDPVMFYCKQTPDYLPSPEA 59

Query: 60  LKLHGITDEFL-KDKPSFSS-IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           + + GIT +    +  S          +F          +N ++D         R   DP
Sbjct: 60  VMVTGITPQQCNAEGVSEPEFAARTHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFVDP 119

Query: 118 LDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKH 158
            + S          +D +       P                L +L K  GI  +H + H
Sbjct: 120 YEYSWKNGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGI--AHENAH 177

Query: 159 GALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A+ D +    + +  ++   Q        E+R  KE KK +
Sbjct: 178 DAMADVYAT--IAMAKLIKQKQPKLFQFFFENRGKKEIKKMI 217


>gi|187933597|ref|YP_001884755.1| exonuclease family protein [Clostridium botulinum B str. Eklund
           17B]
 gi|187721750|gb|ACD22971.1| exonuclease family protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 301

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 4/155 (2%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFL-KDKPSFSSIF 80
            + IIEIG +++  Y K     + ++ P+     +P    +  IT + L K+  +F    
Sbjct: 36  ENEIIEIGVIKVDKYMKQVAEMREYIKPSIFPVMNPVVTNITKITMDTLEKEGITFKQGM 95

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR-N 139
            +      E +    +         I         D       +D    + +     +  
Sbjct: 96  DKLKGMIKEGD-VICSWAKDDVAEIIINSNYHNYTDLSWIKEYLDLQEYSTKILGHKKAM 154

Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            L S      I + +   H AL D+     V+  +
Sbjct: 155 GLKSALDELKIKVDNTKLHDALNDAEYTLLVFKHI 189


>gi|296330790|ref|ZP_06873266.1| sporulation inhibitor KapD [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305675737|ref|YP_003867409.1| putative exoribonuclease (3'-5') [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152104|gb|EFG92977.1| sporulation inhibitor KapD [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305413981|gb|ADM39100.1| putative exoribonuclease (3'-5') [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 205

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 16/181 (8%)

Query: 10  IVFDIETT---G-LDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKL 62
           ++ D E T   G    +N    IIE G V+ +D  +   TF  ++ P      +      
Sbjct: 7   LIIDFEFTMPEGKYSPQNFFPEIIEAGIVKSVDD-EVVETFSSYVRPKKFPKLTKRCKSF 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             IT + + +   F     +  +   E+N+  I      D+  +       +        
Sbjct: 66  LKITQKQVDEGMRFEDFIRKLNELDPEKNSTIITW-GNMDMKVLKQNCMFNHIPFPFKGE 124

Query: 123 IIDTLSIARRKHPSSRNDLNSL---CKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + D     +         L  L    + YG      + H AL D+     ++ K++    
Sbjct: 125 MRDLSLEYKNFF--GDRTLTGLWKAAEEYG-DTGTGTHHKALDDALTAYKLF-KLVEQDK 180

Query: 180 Q 180
           Q
Sbjct: 181 Q 181


>gi|251792518|ref|YP_003007244.1| exonuclease I [Aggregatibacter aphrophilus NJ8700]
 gi|247533911|gb|ACS97157.1| exodeoxyribonuclease I [Aggregatibacter aphrophilus NJ8700]
          Length = 464

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 66/204 (32%), Gaps = 27/204 (13%)

Query: 18  GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLKDK-- 73
           G++   DR  + G +    +++    +  ++          PEA+ + GIT +   +K  
Sbjct: 7   GVNPATDRPAQFGGIRTDANFNIIGESVVLYCKQTNDYLPAPEAVLVTGITPQECNEKGL 66

Query: 74  PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--------ID 125
           P          +F          +N ++D         R   DP + S          +D
Sbjct: 67  PEPDFAARILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLD 126

Query: 126 TLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +       P                L  L +  GI   H + H A+ D +   ++    
Sbjct: 127 LVRACYALRPDGVEWPLDDEGMPSFRLEKLTEANGIE--HTNAHDAMSDVYATIEM--AK 182

Query: 175 MVGGSQINFGFKTNEDRFFKEEKK 198
           ++   Q        E+R  KE +K
Sbjct: 183 LIKQKQPKLFQYFFENRGKKEIEK 206


>gi|184158830|ref|YP_001847169.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii ACICU]
 gi|215482837|ref|YP_002325040.1| Exonuclease family protein [Acinetobacter baumannii AB307-0294]
 gi|239502925|ref|ZP_04662235.1| exodeoxyribonuclease X, putative [Acinetobacter baumannii AB900]
 gi|301347945|ref|ZP_07228686.1| exodeoxyribonuclease X, putative [Acinetobacter baumannii AB056]
 gi|301509924|ref|ZP_07235161.1| exodeoxyribonuclease X, putative [Acinetobacter baumannii AB058]
 gi|301595329|ref|ZP_07240337.1| exodeoxyribonuclease X, putative [Acinetobacter baumannii AB059]
 gi|332850413|ref|ZP_08432733.1| exonuclease [Acinetobacter baumannii 6013150]
 gi|332871851|ref|ZP_08440274.1| exonuclease [Acinetobacter baumannii 6013113]
 gi|332875201|ref|ZP_08443034.1| exonuclease [Acinetobacter baumannii 6014059]
 gi|183210424|gb|ACC57822.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU]
 gi|213986789|gb|ACJ57088.1| Exonuclease family protein [Acinetobacter baumannii AB307-0294]
 gi|322507358|gb|ADX02812.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           1656-2]
 gi|323518744|gb|ADX93125.1| putative DNA exonuclease X [Acinetobacter baumannii TCDC-AB0715]
 gi|332730684|gb|EGJ61995.1| exonuclease [Acinetobacter baumannii 6013150]
 gi|332731180|gb|EGJ62480.1| exonuclease [Acinetobacter baumannii 6013113]
 gi|332736645|gb|EGJ67639.1| exonuclease [Acinetobacter baumannii 6014059]
          Length = 228

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 34/230 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVF--LCPNGRKNSPEALKL 62
           M+ I+ D ET    + N   IEI    +E+     T    ++F  L   G   S  A+ +
Sbjct: 1   MQAIILDTET---HTLNGLPIEIAYAPIEINAGKLTLDKSKLFDQLYQVGTPISYAAMAV 57

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H I +  L+++P     +  F     +     I HN  +D+  I     R   D +   +
Sbjct: 58  HHILESDLENQP----HYKTFK--LPDTTTYIIGHNIDYDIAAI----ARCGVD-VSHIK 106

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISH-------RSKHGALLDSHLLSDVYIKM 174
            I TL++AR+  P +  +++++L   Y I+          +  H A  D  L +++ + +
Sbjct: 107 PICTLALARKTWPDAEAHNISALI--YMISQGSSKARELLKGAHRADADIILTANILMHI 164

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDE 223
           +      +      E+ +   E+  +P  I+  K        + K+ +  
Sbjct: 165 VY-----HLNIHDIEELYRVSEEARIPTTINFGKHKGTAIAELPKDYIQW 209


>gi|332978822|gb|EGK15506.1| exonuclease, RNase T and DNA polymerase III [Psychrobacter sp.
           1501(2011)]
          Length = 252

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 69/207 (33%), Gaps = 29/207 (14%)

Query: 7   MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCP------NGRKNSPEA 59
           M   + D ETTGL D      +   A  ++D    N   QV   P        +  S  +
Sbjct: 15  MTTYILDTETTGLVDPH----MTEAAYSIID--IVNGQVQVLQAPRDKRFNPLKPISLGS 68

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +    I DE + ++P  +     F           + HN  +D+  +       N     
Sbjct: 69  MATSHICDEDVANEPPHTD----FR--LPSSVQYLVGHNIDYDMQVLK------NAGVTH 116

Query: 120 PSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHR---SKHGALLDSHLLSDVYIKMM 175
             ++I T +++    P+   + L +L   +   ++ R     H A+ D      V   ++
Sbjct: 117 TPKLICTKAMSNFLLPTLDSHTLVALLYHFHRDVARRDAKQAHAAVYDIFFTQLVLSSLI 176

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPN 202
              +         E  +   E   +P 
Sbjct: 177 DLANSQGHSITDVESLYQFSELARIPT 203


>gi|16273288|ref|NP_439529.1| exonuclease I [Haemophilus influenzae Rd KW20]
 gi|1169569|sp|P45188|EX1_HAEIN RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
           Full=DNA deoxyribophosphodiesterase; Short=dRPase
 gi|1574211|gb|AAC23023.1| exodeoxyribonuclease I (sbcB) [Haemophilus influenzae Rd KW20]
          Length = 473

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 25/180 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE 68
           ++D E+ G++   DR  +   +    D++        +          PEA+ + GIT +
Sbjct: 9   IYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGITPQ 68

Query: 69  FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--- 123
              +K  S     +     F++ N   + +N  ++D         R   +P + S     
Sbjct: 69  ECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIEPYEYSWKNGN 128

Query: 124 -----IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                +D +       P                L  L K    +I H + H A+ D +  
Sbjct: 129 SRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKA--NSIEHENAHDAMADVYAT 186


>gi|85711607|ref|ZP_01042664.1| Exonuclease I [Idiomarina baltica OS145]
 gi|85694467|gb|EAQ32408.1| Exonuclease I [Idiomarina baltica OS145]
          Length = 486

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 60/197 (30%), Gaps = 28/197 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDE-F 69
           D ET G     DR  +   +   LD+    R   ++  P       PEA+ + GIT +  
Sbjct: 18  DYETWGARPLIDRPAQFAGMRTTLDFQPVGRPLTIYAQPTPDFLPDPEAVLITGITPQYA 77

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L    + ++         ++ N   I +N  +FD     +   R   DP   +       
Sbjct: 78  LNQGVNEANFAQAIVQEMSQPNTIIIGYNNIRFDDEVTRSLCYRNFYDPYAHTWQNGNSR 137

Query: 124 ---IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLL-- 167
              ID +       P   +            L  L +     I H   H A+ D      
Sbjct: 138 WDLIDVVRACYALRPEGIHWPEDEDGRVTLRLEKLTQA--NRIDHGQAHDAMSDVRATIA 195

Query: 168 -SDVYIKMMVGGSQINF 183
            + +  +      Q   
Sbjct: 196 MAQLLAEKQPKLWQFAL 212


>gi|184154831|ref|YP_001843171.1| hypothetical protein LAF_0355 [Lactobacillus fermentum IFO 3956]
 gi|183226175|dbj|BAG26691.1| hypothetical protein [Lactobacillus fermentum IFO 3956]
 gi|299782901|gb|ADJ40899.1| Putative uncharacterized protein [Lactobacillus fermentum CECT
           5716]
          Length = 361

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 74/203 (36%), Gaps = 19/203 (9%)

Query: 8   RKIVFDIE-TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL-HGI 65
           +  + D+E  T   ++    +EIG V+  +  K  + F  F+         EA  +  G+
Sbjct: 15  KYYMLDLEFATHKKTREHLPLEIGVVKYQNGRKVGKQFHRFV----YWADAEADDILRGM 70

Query: 66  TDEFL-----KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD- 119
               +     K +  +  I ++  +F  + +      N   D+  +   ++      +D 
Sbjct: 71  DYANVTYKTYKKQGQWDKIVADLLNFI-DFSLPIGGWNVHGDLQVLLEAIKNHGGPLVDE 129

Query: 120 ---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +D L     + P+    L  + +  G  +S+   H AL D  L + VY  ++ 
Sbjct: 130 KAVCCFEVDELVSWLGELPNKP-SLRGVGRLLGFDVSN--MHHALSDVLLTAQVYDYLVA 186

Query: 177 GGSQINFGFKTNEDRFFKEEKKT 199
                ++       +  KE  +T
Sbjct: 187 LPEIASWKKDPTNTKSTKEAGRT 209


>gi|241686335|ref|XP_002411687.1| exonuclease, putative [Ixodes scapularis]
 gi|215504479|gb|EEC13973.1| exonuclease, putative [Ixodes scapularis]
          Length = 337

 Score = 62.5 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 9   KIVFDIETTGLD----SKNDRIIEIGAVELLDYS-KTNRTFQVFLCPN-GRKNSPEALKL 62
            +V D E T            IIE   +++   S +   TF  ++ P   R+ S    +L
Sbjct: 106 FLVLDFEATCSREKPPPHPQEIIEFPVLKVNGRSFQVESTFHQYVQPRVHRELSSFCTEL 165

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
            GI  + + ++P F  +  +F  +   + 
Sbjct: 166 TGIIQDMVDEQPFFEEVLEKFHQWMCSEG 194


>gi|148978953|ref|ZP_01815243.1| hypothetical protein VSWAT3_05721 [Vibrionales bacterium SWAT-3]
 gi|145962042|gb|EDK27329.1| hypothetical protein VSWAT3_05721 [Vibrionales bacterium SWAT-3]
          Length = 176

 Score = 62.5 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 66/185 (35%), Gaps = 22/185 (11%)

Query: 4   KNKMRKIVFDIE----------TTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNG 52
            N  R + FD+E          TTG       IIE+G  E+ L      +  Q ++ P  
Sbjct: 1   MNHNRVVCFDLEMCCWSENGVGTTG------EIIEVGLAEIDLASGTIVKRAQYYVKPEK 54

Query: 53  RKNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            + S    +L GIT   + K      S+       F   N  + A     D   ++ E Q
Sbjct: 55  DEVSQFCAELTGITPRKIEKQGRPLESVIKSMIKNFGGPNKIYAA--WGRDDLILHKECQ 112

Query: 112 RINKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
               + P      I TL   + +    R    +  +   I    R  H   +D++ L+ +
Sbjct: 113 EKGIEPPFSEFINIATLYRVQNRLKDKRIGHRAAQEAKNIEWEGRQ-HSGYVDAYNLAKL 171

Query: 171 YIKMM 175
            + M+
Sbjct: 172 ALTML 176


>gi|195346611|ref|XP_002039851.1| GM15878 [Drosophila sechellia]
 gi|194135200|gb|EDW56716.1| GM15878 [Drosophila sechellia]
          Length = 281

 Score = 62.5 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 61/198 (30%), Gaps = 30/198 (15%)

Query: 10  IVFDIETTG------LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           I  D E T          +   IIE    +  L   K    F  ++ P    + S    +
Sbjct: 66  IAVDFEATCWENQAPPHWREAEIIEFPAVLVNLKTGKIEAEFHQYILPIESPRLSTYCTE 125

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQN------------AEWIAHNAKF----DVGF 105
           L GI  + +       +    F ++   +             +  +  N  F    D  F
Sbjct: 126 LTGIQQKTVDSGIPLQTAMVMFHEWLRNEMRARNLTLPKTNKSNILG-NCAFVTWTDWDF 184

Query: 106 INAELQRINKDPL----DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
                +  N+  +      ++ ID  +I R  +     +        G+    R  H  +
Sbjct: 185 GICLAKECNRKGIRKAAYFNQWIDVRAIYRSWYKYRPCNFTDALSHVGLAFEGR-AHSGI 243

Query: 162 LDSHLLSDVYIKMMVGGS 179
            D+  L  +  KMM  G+
Sbjct: 244 DDAKNLGALMCKMMRDGA 261


>gi|321312691|ref|YP_004204978.1| sporulation inhibitor KapD [Bacillus subtilis BSn5]
 gi|291485595|dbj|BAI86670.1| sporulation inhibitor KapD [Bacillus subtilis subsp. natto BEST195]
 gi|320018965|gb|ADV93951.1| sporulation inhibitor KapD [Bacillus subtilis BSn5]
          Length = 205

 Score = 62.5 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 59/181 (32%), Gaps = 16/181 (8%)

Query: 10  IVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKL 62
           ++ D E T  D K         IIE G V+ +D  +   TF  ++ P      +      
Sbjct: 7   LIIDFEFTMPDGKYSPQNFFPEIIEAGIVKSIDD-EVVETFSSYVRPKKFPKLTKRCKSF 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             IT + + +   F     +  +   E+N+  I      D+  +       +        
Sbjct: 66  LKITQKQVDEGMRFEDFIRKLNELDPEKNSTIITW-GNMDMKVLKQNCMFNHIPFPFKGE 124

Query: 123 IIDTLSIARRKHPSSRNDLNSL---CKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + D     +         L  L    + YG      + H AL D+     ++ K++    
Sbjct: 125 MRDLSLEYKNFF--GDRTLTGLWKAAEEYG-DSGTGTHHKALDDALTAYKLF-KLVEQDK 180

Query: 180 Q 180
           Q
Sbjct: 181 Q 181


>gi|16080199|ref|NP_391025.1| sporulation inhibitor KapD [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221311089|ref|ZP_03592936.1| sporulation inhibitor KapD [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315416|ref|ZP_03597221.1| sporulation inhibitor KapD [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320332|ref|ZP_03601626.1| sporulation inhibitor KapD [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324616|ref|ZP_03605910.1| sporulation inhibitor KapD [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|81637456|sp|O05231|KAPD_BACSU RecName: Full=Probable 3'-5' exonuclease kapD
 gi|1934782|emb|CAB07913.1| unknown [Bacillus subtilis subsp. subtilis str. 168]
 gi|2635643|emb|CAB15136.1| putative exoribonuclease (3'-5') [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 205

 Score = 62.5 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 59/181 (32%), Gaps = 16/181 (8%)

Query: 10  IVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKL 62
           ++ D E T  D K         IIE G V+ +D  +   TF  ++ P      +      
Sbjct: 7   LIIDFEFTMPDGKYSPQNFFPEIIEAGIVKSIDD-EVVETFSSYVRPKKFPKLTKRCKSF 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             IT + + +   F     +  +   E+N+  I      D+  +       +        
Sbjct: 66  LKITQKQVDEGMRFEDFIRKLNELDPEKNSTIITW-GNMDMKVLKQNCMFNHIPFPFKGE 124

Query: 123 IIDTLSIARRKHPSSRNDLNSL---CKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + D     +         L  L    + YG      + H AL D+     ++ K++    
Sbjct: 125 MRDLSLEYKNFF--GDRTLTGLWKAAEEYG-DSGTGTHHKALDDALTAYKLF-KLVEQDK 180

Query: 180 Q 180
           Q
Sbjct: 181 Q 181


>gi|149183042|ref|ZP_01861496.1| sporulation inhibitor KapD [Bacillus sp. SG-1]
 gi|148849272|gb|EDL63468.1| sporulation inhibitor KapD [Bacillus sp. SG-1]
          Length = 214

 Score = 62.5 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 17/181 (9%)

Query: 2   IRKNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG 52
           I+    + ++ D E +         G   +   IIE G V + +   T++ F  ++ P+ 
Sbjct: 8   IQLKGNQLVIIDFEFSMPERQQNPRGFYPE---IIETGLVAVQNGKITDK-FSTYVKPSA 63

Query: 53  RKN-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
               +    +   I+   + +   F S+     +       + I      D+  +     
Sbjct: 64  FPVLTKRCKQFLSISQSDVDNGIPFHSLIQYLNEINRRGKNKIITW-GNMDMKVLRNNCN 122

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +   D       ID     +R         L    + YG        H AL D+     +
Sbjct: 123 KAGIDFPFTGEFIDLSMEYKRFFGDQNQTGLWKAVQEYGRE-GVGKHHKALDDALTTYHI 181

Query: 171 Y 171
           +
Sbjct: 182 F 182


>gi|237797629|ref|ZP_04586090.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020479|gb|EGI00536.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 180

 Score = 62.5 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 10/176 (5%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D+E T    G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPVRRPLLTHFCRQLT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINKD-PLDP 120
            I+   +      ++++ +F  + +   A  +   +   +D   +  E +    D  L  
Sbjct: 64  HISQSNIDSAAPLTTVWPQFERWLSHHRARVLGWASWGDYDRQQLEEEWRHHQLDSALSS 123

Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              ++     A+ +       LNS  +  G+  + +  H AL+D+   + +   +M
Sbjct: 124 MPHVNLKQRFAQARQLQKPLGLNSALQLAGMQFTGQQ-HRALVDARNTARLLPLIM 178


>gi|293415305|ref|ZP_06657948.1| exodeoxyribonuclease I [Escherichia coli B185]
 gi|291432953|gb|EFF05932.1| exodeoxyribonuclease I [Escherichia coli B185]
          Length = 475

 Score = 62.5 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRSAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|161612020|gb|AAI55978.1| hypothetical protein LOC548900 [Xenopus (Silurana) tropicalis]
 gi|161612114|gb|AAI55988.1| hypothetical protein LOC548900 [Xenopus (Silurana) tropicalis]
          Length = 345

 Score = 62.5 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 70/190 (36%), Gaps = 20/190 (10%)

Query: 9   KIVFDIETT---GLDSK-NDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKL 62
             V D E T   G  +     IIE   V L  +  +    FQ ++ P      S   + L
Sbjct: 126 ICVIDFEATCEEGNSTDYTHEIIEFPIVLLNTHTLEIEDVFQRYVRPEINPQLSEFCVNL 185

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG-FINAELQ--R 112
            GIT + +     F  +     D+  E       + A     +  +D+  F+N + +  R
Sbjct: 186 TGITQDIVDKSDIFPDVLRSVVDWMREKELGTKYKYAILT--DGSWDMSKFLNMQCRVSR 243

Query: 113 INKDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +           I        K P ++  L ++ ++ G+T   R  H  + DS  ++ + 
Sbjct: 244 LKYPRFAKKWINIRKSYGNFYKVPRTQTKLTTMLEKLGMTYDGR-LHSGVDDSKNIARIA 302

Query: 172 IKMMVGGSQI 181
             M+  G ++
Sbjct: 303 AHMLQDGCEL 312


>gi|82777457|ref|YP_403806.1| exonuclease I [Shigella dysenteriae Sd197]
 gi|81241605|gb|ABB62315.1| exonuclease I [Shigella dysenteriae Sd197]
          Length = 475

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYTLRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
 gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
          Length = 931

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 34/146 (23%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N  + +  D ETTGLD+  D II I  A++  +          +L  +GR          
Sbjct: 357 NAKKLVCIDFETTGLDTLTDEIIGISFAIKSKEA--------FYLDLSGR---------T 399

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I  E  K            +D   +++ + I HN K++   + A  +++       +  
Sbjct: 400 NIDKEACK---------KLVFDTLAKEDIKIIGHNLKYEYKMMRAIDKKMG------NMY 444

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRY 148
            DT+  A   +PS  R +++ L   Y
Sbjct: 445 FDTMVAAYLINPSRGRYNMDDLALSY 470


>gi|91223788|ref|ZP_01259052.1| hypothetical protein V12G01_18627 [Vibrio alginolyticus 12G01]
 gi|91191280|gb|EAS77545.1| hypothetical protein V12G01_18627 [Vibrio alginolyticus 12G01]
          Length = 176

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 8/177 (4%)

Query: 4   KNKMRKIVFDIETTGLDSKN----DRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE 58
            N  R + FD+E    +         IIE+G  E+ L   +  +  Q ++ P   + S  
Sbjct: 1   MNHNRIVCFDLEMCCWNENGVGSTGEIIEVGLAEIDLSKGEIVKRAQYYVKPEHDEVSLF 60

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             +L GIT   + K       +       F  +N  + +   + D+  +    Q+  + P
Sbjct: 61  CAELTGITPRKIEKQGRPLEEVLKSMVKNFGGRNKIFASW-GRDDLILLEECKQKGIEAP 119

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                 + TL   + +    R    +  +  GI    R  H   +D++ L+ + + M
Sbjct: 120 FTEFINLATLYRIQNRLKDKRIGHRAAQEAKGIDWEGRQ-HSGYVDAYNLAKLALTM 175


>gi|118366139|ref|XP_001016288.1| exonuclease family protein [Tetrahymena thermophila]
 gi|89298055|gb|EAR96043.1| exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 559

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIG-----AVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64
           V D E T  + K  +I EI       ++L      +R F  F+ P      +P   KL G
Sbjct: 63  VIDFECTCDEEKRLKIQEIIEFPIVVIDLRKKEIIDR-FHSFVRPTQYPILTPFCTKLTG 121

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF 87
           IT E +   P+   +  E   F 
Sbjct: 122 ITQEQVDSAPTLPEVLKEVDRFL 144


>gi|120599334|ref|YP_963908.1| exonuclease I [Shewanella sp. W3-18-1]
 gi|120559427|gb|ABM25354.1| Exodeoxyribonuclease I subunit C [Shewanella sp. W3-18-1]
          Length = 472

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 62/191 (32%), Gaps = 28/191 (14%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK--NSPE 58
           ++ NK+  I + D ET G +   DR  +   +            + F C        SPE
Sbjct: 3   MKHNKIESIFWHDYETFGANPARDRPAQFAGIRTDLDLNIIGEPETFYCKQATDYLPSPE 62

Query: 59  ALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           A+ + GIT +   LK  P  +         F++ N     +N+ +FD         R   
Sbjct: 63  AILITGITPQLANLKGIP-ETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFI 121

Query: 116 DPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP              ID +       P                L  L +  G  +SH  
Sbjct: 122 DPYAREWQNGNSRWDIIDLVRACYAFRPDGINWPLKDDGSPSFKLEHLTQANG--LSHEK 179

Query: 157 KHGALLDSHLL 167
            H A+ D +  
Sbjct: 180 AHDAMSDVYAT 190


>gi|294141308|ref|YP_003557286.1| exodeoxyribonuclease I [Shewanella violacea DSS12]
 gi|293327777|dbj|BAJ02508.1| exodeoxyribonuclease I [Shewanella violacea DSS12]
          Length = 470

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 82/232 (35%), Gaps = 30/232 (12%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G +   DR  +   +   +D +  +     +    N    SPEA+ + GIT +  
Sbjct: 13  DYETFGANPSKDRPSQFAGIRTDMDLNIVSEPVTFYCKVANDYLPSPEAILITGITPQLA 72

Query: 70  -LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------D 119
            LK  P  +   ++  + F++ N     +N+ +FD         R   DP          
Sbjct: 73  NLKGMP-ETEFMAKVNEQFSQPNTCVAGYNSIRFDDEVTRFGFYRNFIDPYAREWQKGNS 131

Query: 120 PSRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
              IID +       P                L  L K  G  +SH   H A+ D +   
Sbjct: 132 RWDIIDLVRACYAFRPEGIEWPLKEDGTPSFKLEHLTKANG--LSHEKAHDAMSDVYATI 189

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
           D+    ++   Q        + R  +E  K +  +++      + ++I+ E 
Sbjct: 190 DM--AKLIKQKQPKLFDYYFQLRRKQEVSKQLDVLNMQPLVH-VSSKISAEH 238


>gi|161618693|ref|YP_001592580.1| hypothetical protein BCAN_A0738 [Brucella canis ATCC 23365]
 gi|260566702|ref|ZP_05837172.1| exonuclease [Brucella suis bv. 4 str. 40]
 gi|161335504|gb|ABX61809.1| Hypothetical protein BCAN_A0738 [Brucella canis ATCC 23365]
 gi|260156220|gb|EEW91300.1| exonuclease [Brucella suis bv. 4 str. 40]
          Length = 203

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 16/167 (9%)

Query: 26  IIEIGAVEL--LDYSKTNRTFQVFLCPNGR-----KNSPEALKLHGITDEFL-KDKPSFS 77
           I +IGAV++   +      TF+ ++ P+ R       +P    L GIT+E + +D     
Sbjct: 32  IAQIGAVKIGLENELPILETFKAYVTPHDRYGAHYAIAPYFTDLTGITEEQISRDGKPLK 91

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID-----TLSIARR 132
           +  ++   F     A + +     ++  I          PL P+   D      L+    
Sbjct: 92  TALNDLDSF--SDGATFWSWGKD-ELNMIAISCYVEGIAPLIPAPRFDNAVKLLLAAGMP 148

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               +R   N L   YG+       H AL D+  +      ++  G 
Sbjct: 149 VEDLARTPSNKLADYYGLEHPELQGHDALDDARSIGYTLQYLLSSGK 195


>gi|227514397|ref|ZP_03944446.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 14931]
 gi|227087263|gb|EEI22575.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 14931]
          Length = 361

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 19/180 (10%)

Query: 8   RKIVFDIE-TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL-HGI 65
           +  + D+E  T   ++    +EIG V+  +  K  + F  F+         EA  +  G+
Sbjct: 15  KYYMLDLEFATHKKTREHLPLEIGVVKYQNGRKVGKQFHRFV----YWADAEADDILRGM 70

Query: 66  TDEFL-----KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD- 119
               +     K +  +  I ++  +F  + +      N   D+  +   ++      +D 
Sbjct: 71  DYANVTYKTYKKQGQWDKIVADLLNFI-DFSLPIGGWNVHGDLQVLLEAIKNHGGPLVDE 129

Query: 120 ---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
                  +D L     + P+    L  + +  G  +S+   H AL D  L + VY  ++ 
Sbjct: 130 KAVCCFEVDELVSWLGELPNKP-SLRGVGRLLGFDVSN--MHHALSDVLLTAQVYDYLVA 186


>gi|226492270|ref|NP_001146741.1| hypothetical protein LOC100280343 [Zea mays]
 gi|219888569|gb|ACL54659.1| unknown [Zea mays]
          Length = 427

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 57/182 (31%), Gaps = 14/182 (7%)

Query: 9   KIVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D E T     +     IIE    +      K    FQ ++ P   +  +    +L 
Sbjct: 129 FVVIDFEATCDKVNNPFPQEIIEFPSVLVNSATGKLEECFQTYVRPTYHQFLTDFCKELT 188

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINK--D 116
           GI    +               +  ++         +   + +D   +     R  +   
Sbjct: 189 GIQQIQVDRGVPLGEALLMHDKWLEDKGIKNTNFAIVTW-SNWDCRIMLESECRFKRIRK 247

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P   +R I+     +  +   R +L    +  G+T   R  H  L D+   + +   +M 
Sbjct: 248 PPYFNRWINLRVPFQEVYGDVRCNLKEAVQLAGLTWEGR-AHCGLDDARNTARLLALLMH 306

Query: 177 GG 178
            G
Sbjct: 307 RG 308


>gi|195629706|gb|ACG36494.1| histone mRNA exonuclease 1 [Zea mays]
          Length = 437

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 57/182 (31%), Gaps = 14/182 (7%)

Query: 9   KIVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D E T     +     IIE    +      K    FQ ++ P   +  +    +L 
Sbjct: 138 FVVIDFEATCDKVNNPFPQEIIEFPSVLVNSATGKLEECFQTYVRPTYHQFLTDFCKELT 197

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINK--D 116
           GI    +               +  ++         +   + +D   +     R  +   
Sbjct: 198 GIQQIQVDRGVPLGEALLMHDKWLEDKGIKNTNFAIVTW-SNWDCRIMLESECRFKRIRK 256

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P   +R I+     +  +   R +L    +  G+T   R  H  L D+   + +   +M 
Sbjct: 257 PPYFNRWINLRVPFQEVYGDVRCNLKEAVQLAGLTWEGR-AHCGLDDARNTARLLALLMH 315

Query: 177 GG 178
            G
Sbjct: 316 RG 317


>gi|33519912|ref|NP_878744.1| exonuclease I [Candidatus Blochmannia floridanus]
 gi|33504257|emb|CAD83520.1| exodeoxyribonuclease I [Candidatus Blochmannia floridanus]
          Length = 501

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 26/190 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEALKLHGIT 66
            +++D ET GL+   DR  +  ++ + +        +VF C  PN    +PE++ + GIT
Sbjct: 10  FLIYDYETFGLNPALDRPAQFASIRVNNSLCPVEKKEVFFCQIPNDYLPNPESVLITGIT 69

Query: 67  D-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP---- 120
             + L +         +    FN  N   + +N   FD  F      R   DP       
Sbjct: 70  PYDTLSNGLLEPQFAYQISQKFNVPNTCILGYNNISFDDEFSRNIFYRNFYDPYKWSYHH 129

Query: 121 -SRIIDTLSIARR---KHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSH 165
            +   D L + R     +P+               L  L      +I H + H A  D  
Sbjct: 130 GNSRWDLLPVLRAFYSLYPTGIQWPINSKKKVSFRLTDLT--LANSIQHLNAHDATSDIF 187

Query: 166 LLSDVYIKMM 175
              ++ +K++
Sbjct: 188 ATLEI-MKLI 196


>gi|221330522|ref|NP_726151.2| snipper, isoform G [Drosophila melanogaster]
 gi|159884093|gb|ABX00725.1| IP11159p [Drosophila melanogaster]
 gi|220902332|gb|AAM68201.2| snipper, isoform G [Drosophila melanogaster]
          Length = 384

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 30/198 (15%)

Query: 10  IVFDIETTG------LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           I  D E T        + +   IIE    +  L   K    F  ++ P    + S    +
Sbjct: 169 IAVDFEATCWEKQAPPEWREAEIIEFPAVLVNLKTGKIEAEFHQYILPFESPRLSAYCTE 228

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAHNAKFDV 103
           L GI  + +       +    F ++   +                  N  ++     +D 
Sbjct: 229 LTGIQQKTVDSGMPLRTAIVMFNEWLRNEMRARNLTLPKMNKSNILGNCAFVTW-TDWDF 287

Query: 104 G-FINAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           G  +  E  R   + P   ++ ID  +I R  +     +        G+    +  H  +
Sbjct: 288 GICLAKECSRKGIRKPAYFNQWIDVRAIYRSWYKYRPCNFTDALSHVGLAFEGK-AHSGI 346

Query: 162 LDSHLLSDVYIKMMVGGS 179
            D+  L  +  KM+  G+
Sbjct: 347 DDAKNLGALMCKMVRDGA 364


>gi|24657520|ref|NP_726149.1| snipper, isoform F [Drosophila melanogaster]
 gi|24657528|ref|NP_726150.1| snipper, isoform E [Drosophila melanogaster]
 gi|10727027|gb|AAF46791.2| snipper, isoform E [Drosophila melanogaster]
 gi|21626519|gb|AAM68200.1| snipper, isoform F [Drosophila melanogaster]
          Length = 223

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 30/198 (15%)

Query: 10  IVFDIETTG------LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           I  D E T        + +   IIE    +  L   K    F  ++ P    + S    +
Sbjct: 8   IAVDFEATCWEKQAPPEWREAEIIEFPAVLVNLKTGKIEAEFHQYILPFESPRLSAYCTE 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAHNAKFDV 103
           L GI  + +       +    F ++   +                  N  ++     +D 
Sbjct: 68  LTGIQQKTVDSGMPLRTAIVMFNEWLRNEMRARNLTLPKMNKSNILGNCAFVTW-TDWDF 126

Query: 104 G-FINAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           G  +  E  R   + P   ++ ID  +I R  +     +        G+    +  H  +
Sbjct: 127 GICLAKECSRKGIRKPAYFNQWIDVRAIYRSWYKYRPCNFTDALSHVGLAFEGK-AHSGI 185

Query: 162 LDSHLLSDVYIKMMVGGS 179
            D+  L  +  KM+  G+
Sbjct: 186 DDAKNLGALMCKMVRDGA 203


>gi|309787899|ref|ZP_07682509.1| exodeoxyribonuclease I [Shigella dysenteriae 1617]
 gi|308924298|gb|EFP69795.1| exodeoxyribonuclease I [Shigella dysenteriae 1617]
          Length = 475

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYTLRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 179 NAHDAMADVYAT 190


>gi|296283564|ref|ZP_06861562.1| exonuclease, RNase T and DNA polymerase III [Citromicrobium
           bathyomarinum JL354]
          Length = 180

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 72/181 (39%), Gaps = 18/181 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI   ++  I  D+ET+G       ++ IGA  +    + ++ F+  L P   +  P+AL
Sbjct: 1   MIASEEI-FISVDVETSGPIPGEFSLLSIGACAVD---RPDQHFECLLKPITDRADPKAL 56

Query: 61  KLHGITDEFLKDKPSFS-SIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRIN 114
           ++ G++ E L+            F  +  +         ++  NA FD  F+N    R  
Sbjct: 57  EVSGLSLEILQHTGLEPVQAMERFEIWVGQMAGETGTPIFVGFNAPFDWSFVNYYFHRFL 116

Query: 115 KDPLDPSRIID----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +        +D     +  A     ++R+    + K+ G  +     H  L D+   +++
Sbjct: 117 RRNPFGFTALDIKAYYMGSAGTSWEATRSS--KMRKQLGAALEGD--HDPLNDALAQAEL 172

Query: 171 Y 171
           +
Sbjct: 173 F 173


>gi|332993520|gb|AEF03575.1| exodeoxyribonuclease I [Alteromonas sp. SN2]
          Length = 477

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 56/178 (31%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVF-LCPNGRKNSPEALKLHGITDEF- 69
           D ET G   + D   +  A+   LD++   +   +     N     PEA  + GIT +  
Sbjct: 10  DFETFGTSGQKDLPCQFAAIRTDLDFNIIGKPINIMSAIANDYLPHPEACLVTGITPQQT 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L+D  + +      +   +  N   +  N+ +FD         R   DP           
Sbjct: 70  LRDGSNEADFAKRIYQEMSTPNTCSLGFNSIRFDDEVARFLFYRNFYDPYSREWRNGNSR 129

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              ID         P                L  L K     ISH + H AL D H  
Sbjct: 130 WDIIDLARACYALRPDGINWPTREDGTPSFKLEHLTKE--NDISHENAHDALSDVHAT 185


>gi|331646932|ref|ZP_08348031.1| putative DNA polymerase III epsilon subunit [Escherichia coli M605]
 gi|331044249|gb|EGI16380.1| putative DNA polymerase III epsilon subunit [Escherichia coli M605]
          Length = 206

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD      +EIG  +          F+  L  +      +A  +HGI+++
Sbjct: 104 PLFLDTETTGLD-NTAEALEIGLTDASGQVV----FETRLK-STVAIGAQAAAVHGISEQ 157

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
            L   P ++ +  +       +    I  NA+FD+  +       
Sbjct: 158 ALCGAPLWTDVARQLRHAIGGR--PVIIFNARFDIRILKQTAAAH 200


>gi|302873722|ref|YP_003842355.1| BRCT domain-containing protein [Clostridium cellulovorans 743B]
 gi|302576579|gb|ADL50591.1| BRCT domain protein [Clostridium cellulovorans 743B]
          Length = 271

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 80/207 (38%), Gaps = 32/207 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE------ALK 61
           + I+ D+ET      +  I E+  + + +Y   ++ +       G++             
Sbjct: 3   KMILIDLETQDFSVTSG-IYEVACLVVENYEIIDKLY------LGKEIPDYKGKRNYGFG 55

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            + I+ +        +   ++F +F  +     +AHN  FD  F+    Q I  D L   
Sbjct: 56  FYNISGD--------TEYITKFKEFLKKYPYPIVAHNCPFDRKFLV-YYQWITDDYLAYC 106

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMMVGGS 179
            +   + +A +   S    L +L K Y   ++   KH A+ D     +VY  +K++    
Sbjct: 107 SM-RAIRMANKMLDS--YALQNLVKHY--EVADEVKHTAMSDIE---NVYKILKIVKPQI 158

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLL 206
            +  G  +    + K + + + +I L 
Sbjct: 159 WLPVGTSSKSRSYSKVKARALEDIDLR 185


>gi|261327259|emb|CBH10235.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 452

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 84/215 (39%), Gaps = 19/215 (8%)

Query: 10  IVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTN--RTFQVFLCPNGRKN-SPEALKL 62
           IV D+E T     D+    IIE+ G +  +     +  R+F+ ++ P      +P    L
Sbjct: 145 IVVDVEATCEYKNDNYPHEIIELPGVLVDVRRGVVDKERSFRSYVRPQRNPLLTPFCKAL 204

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEW-IAHNAKFDV-GFINAE--LQRINK 115
            GIT E +   P+   +   F  ++ E   + A+  +A +  +D+  F++    L+    
Sbjct: 205 TGITQEDVDSAPTLQEVVKLFEQWYTETIPRGAKVALATDGPWDLKNFVHEHSILRDHIS 264

Query: 116 DPLDPSRIIDTLSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            P      +D  +         +   L  + +R  +T   R   G   D+  ++ + + M
Sbjct: 265 FPTIFYEYLDIRTTFAHFFNRGTPLKLVPMLERLQLTFEGREHCG-FDDAVNIARLAVSM 323

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
           M  G   N+           E    +PN +L +R 
Sbjct: 324 MRAGCVFNYLVAIP---LTDEFHYDMPNTALYRRK 355


>gi|241896984|ref|NP_001155946.1| exoribonuclease 1 [Acyrthosiphon pisum]
          Length = 340

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 36/242 (14%)

Query: 9   KIVFDIETTGLDSKND----RIIEIGAVELL-DYSKTNRTFQVFLCPNGRK-NSPEALKL 62
            +V DIE T  ++        IIE  AV +     K    FQ F+ P+     S   +KL
Sbjct: 95  FVVIDIEATCTENNPADYKFEIIEFPAVLVDAKKRKIIDHFQAFVKPSINPKLSEFCIKL 154

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-----IAHNAKFDV-GFINAELQRINKD 116
            GIT + + +  SF    + F  +  E          I  +  FD+  F+  +       
Sbjct: 155 TGITQDQIDNADSFEVCLTRFTKWLEEHELGIKHKFSIVTDGPFDMARFLYGQCLMSEIP 214

Query: 117 -PLDPSRIIDTLSIARRKHPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSD 169
            P   ++ I+   + +  + + +        LN++     +     + H  L DS  +S 
Sbjct: 215 YPKFATKWINIRKVFKAFYFTKQVKYSVPCNLNAMLTFLDMEFEG-NPHSGLDDSFNISR 273

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
           + I+++  G+ I+            E   ++   +   +D PL  R        H+    
Sbjct: 274 ICIRLLEDGAFID----------QNERIISLKTPTPYGKDDPLPVRPV------HNIFCD 317

Query: 230 TL 231
            +
Sbjct: 318 GM 319


>gi|240949271|ref|ZP_04753615.1| exonuclease I [Actinobacillus minor NM305]
 gi|240296387|gb|EER47031.1| exonuclease I [Actinobacillus minor NM305]
          Length = 514

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 62/184 (33%), Gaps = 25/184 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +    +D E+ G++   DR  +   +   D ++        +    +    SPEA+ + G
Sbjct: 5   LTFFFYDYESFGVNPAVDRPAQFAGIRTDDQFNIIGEPVMFYCKQTSDYLPSPEAVMVTG 64

Query: 65  ITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDP 117
           I  +    +  S     +     F++ N   I +N  ++D       F            
Sbjct: 65  ILPQQCNAEGLSEPEFAARIHAEFSQPNTCVIGYNNIRYDDEMTRYTFFRNFFDPYEYSW 124

Query: 118 LDPSRIIDTLSIARRKH---PSS-----------RNDLNSLCKRYGITISHRSKHGALLD 163
            + +   D L + R  +   P                L +L K  GI  +H + H A+ D
Sbjct: 125 KNGNSRWDLLDVVRACYALRPEGIDWVKDEEGIPNFKLENLTKANGI--AHENAHDAMSD 182

Query: 164 SHLL 167
            +  
Sbjct: 183 VYAT 186


>gi|255578253|ref|XP_002529994.1| conserved hypothetical protein [Ricinus communis]
 gi|223530517|gb|EEF32399.1| conserved hypothetical protein [Ricinus communis]
          Length = 409

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 14/182 (7%)

Query: 9   KIVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLH 63
            +V D E T     +     IIE    +      +    FQ ++ P   +  S     L 
Sbjct: 136 FVVIDFEATCDKERNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQHLSDFCKDLT 195

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRIN--KD 116
           GI    +    + S        +  ++         +   + +D   +     R    + 
Sbjct: 196 GIQQIQVDRGVTLSEALLRHDKWLEKKGIKNTSFAVVTW-SNWDCRVMLESECRFKKIRK 254

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P   +R I+     R      R +L    +  G+    R  H  L D+   + +   +M 
Sbjct: 255 PPYFNRWINLKVPFREVFGGVRCNLKEAVEMAGLAWQGR-AHCGLDDAKNTARLLAFLMR 313

Query: 177 GG 178
            G
Sbjct: 314 KG 315


>gi|289706804|ref|ZP_06503147.1| hypothetical protein HMPREF0569_1980 [Micrococcus luteus SK58]
 gi|289556489|gb|EFD49837.1| hypothetical protein HMPREF0569_1980 [Micrococcus luteus SK58]
          Length = 308

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 13/213 (6%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-- 58
           M   +++  +  +I T G D  +   +++  V      +     +  + P     S    
Sbjct: 1   MSELDELDFVAVEIHTAGADPASVCAVDMALVR---GGEIVAAERWPVRPPTGPTSFSRL 57

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             +LHG+ +  + D P +  + ++  D   E    ++A  A  D G   A  +     P 
Sbjct: 58  HTQLHGVDEAAVADAPDWPEVAAQ-LDLLGEH-LPFVASGADRDRGAYEAATRATGGTP- 114

Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                 D L++  R  P  +   + +  +  G+    R   GA  ++   ++V + +   
Sbjct: 115 QEHEWRDALALVGRLRPDVTPPRITTAAQALGVPDGARPA-GAGSEAVRTAEVVLAL--- 170

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
             Q   G                P I    R +
Sbjct: 171 ARQSGRGTVRRLWSEAAPPAPDEPIIPESLRQR 203


>gi|116666695|pdb|1ZBU|A Chain A, Crystal Structure Of Full-Length 3'-Exonuclease
 gi|116666696|pdb|1ZBU|B Chain B, Crystal Structure Of Full-Length 3'-Exonuclease
 gi|116666697|pdb|1ZBU|C Chain C, Crystal Structure Of Full-Length 3'-Exonuclease
 gi|116666698|pdb|1ZBU|D Chain D, Crystal Structure Of Full-Length 3'-Exonuclease
          Length = 349

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 22/219 (10%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGF-------INAELQRI 113
            GIT + +    +F  +  +  D     E   ++  ++   D  +       I  +L R+
Sbjct: 190 TGITQDQVDRADTFPQVLKKVIDLXKLKELGTKY-KYSLLTDGSWDXSKFLNIQCQLSRL 248

Query: 114 NKDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              P       I        K P S+  L    ++ G     R  H  L DS  ++ + +
Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIXLEKLGXDYDGR-PHCGLDDSKNIARIAV 307

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
           + +    Q     + NE     +      ++ +     P
Sbjct: 308 RXL----QDGCELRINEKXHAGQLXSVSSSLPIEGTPPP 342


>gi|56758854|gb|AAW27567.1| SJCHGC03520 protein [Schistosoma japonicum]
          Length = 201

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 14/184 (7%)

Query: 9   KIVFDIETTG---LDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D E T    +   +  IIE   + +  Y+  T   F  ++ P      S    +L 
Sbjct: 10  FMVLDFEATCEKDIKIPDPEIIEFPVLMVNAYTLHTESIFHHYVRPTINPVLSDFCTELT 69

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-------FINAELQRINKD 116
           GI    ++D+P   SI   F  F ++ N +   +   F           +  + + +  D
Sbjct: 70  GIIQSMIEDEPELPSILKMFDLFLDKNNLKICPYKFAFVTCGDWDLKIMLPQQCKLLGID 129

Query: 117 -PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P    + I+   +           + S+     I  + R  H  + D   ++++  +++
Sbjct: 130 VPDCFKQWINLKQVYCDVMGQFPFSMMSMLAGLNIKHTGR-HHSGIDDCRNIANILCELI 188

Query: 176 VGGS 179
             G+
Sbjct: 189 RCGA 192


>gi|309359093|emb|CAP32716.2| hypothetical protein CBG_14050 [Caenorhabditis briggsae AF16]
          Length = 210

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 71/189 (37%), Gaps = 27/189 (14%)

Query: 10  IVFDIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65
           ++ D ETT    K+D    +I+   V L         F  F+ P      S       GI
Sbjct: 12  LILDFETTSDGEKHDYPFEVIQFSVVPLDLEGI---AFNKFVRPVVNPILSNYCADFTGI 68

Query: 66  TDEFLKDKPSFSSIFSEFWDFF---------------NEQNAEWIAHNAKFDVGFINAEL 110
             EFL    +F  ++ +F ++                + Q+   IA   ++    +   +
Sbjct: 69  KQEFLNAADTFLVVYKQFLEWLQKNGFQERKLAIVCDSSQDMWRIA---QYQFRLVRETM 125

Query: 111 QRINKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             + +  ++  R  D  L   ++     ++++  +    GI +S +  H AL D   ++ 
Sbjct: 126 PSMFRQWINIKRTFDDGLEDGQKNKLVGKSNIEKMSSYLGIELSGK-AHDALSDCLNIAA 184

Query: 170 VYIKMMVGG 178
           +  K++  G
Sbjct: 185 ITQKILEIG 193


>gi|55670498|pdb|1W0H|A Chain A, Crystallographic Structure Of The Nuclease Domain Of
           3'hexo, A Deddh Family Member, Bound To Ramp
          Length = 204

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 70/189 (37%), Gaps = 18/189 (9%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 12  ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 71

Query: 63  HGITDEFLKDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGF-------INAELQRI 113
            GIT + +    +F  +  +  D+    E   ++  ++   D  +       I  +L R+
Sbjct: 72  TGITQDQVDRADTFPQVLKKVIDWXKLKELGTKY-KYSLLTDGSWDXSKFLNIQCQLSRL 130

Query: 114 NKDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              P       I        K P S+  L    ++ G     R  H  L DS  ++ + +
Sbjct: 131 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIXLEKLGXDYDGR-PHCGLDDSKNIARIAV 189

Query: 173 KMMVGGSQI 181
           + +  G ++
Sbjct: 190 RXLQDGCEL 198


>gi|284007268|emb|CBA72582.1| exodeoxyribonuclease I [Arsenophonus nasoniae]
          Length = 474

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 62/203 (30%), Gaps = 27/203 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PE 58
           M  K K   +  D ET G     DR  +   +    +++        +  P       P+
Sbjct: 1   MANKQKSSFLFHDYETFGQHPALDRPAQFAGIRTDSNFNIIEDPQIFYCAPADDYLPQPQ 60

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           A+ + GIT +  +    + +         F+  N+  + +N  +FD         R   D
Sbjct: 61  AVMITGITPQYAIAHGINEAEFAKRIHGIFSIANSCILGYNNIRFDDEVTRHIFYRNFYD 120

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D L       P                L  L    GI   H + 
Sbjct: 121 PYAYSWQQGNSRWDLLDVLRACYALRPDGINWPSNDEGLPSFKLEHLTVVNGIE--HANA 178

Query: 158 HGALLDSHLLSDVYIKMMVGGSQ 180
           H A  D     ++    ++  +Q
Sbjct: 179 HDATADVLATIEM--AKLIKQAQ 199


>gi|255319740|ref|ZP_05360947.1| putative exodeoxyribonuclease X [Acinetobacter radioresistens SK82]
 gi|262379533|ref|ZP_06072689.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255303194|gb|EET82404.1| putative exodeoxyribonuclease X [Acinetobacter radioresistens SK82]
 gi|262298990|gb|EEY86903.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 230

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 85/218 (38%), Gaps = 36/218 (16%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRT---FQVFLCPNGRKNSPEALK 61
           M+ I+ D ET    + N   IEI    V++     +      F        +  S  A+ 
Sbjct: 1   MQAIILDTET---HTLNGLPIEIAYAPVQIAQGRLSLDKSQLFDQLYSIGEQSISYAAMA 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDF-FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +H I +  +  +P +        DF    +    I HN  +D+      +++   D    
Sbjct: 58  VHHILEADIAGQPHYK-------DFSLPAETVYIIGHNINYDIR----TIEKCGIDT-SN 105

Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISH-------RSKHGALLDSHLLSDVYI 172
            + I TL++AR+  P +  +++++L   Y I+          +  H A  D  L +++ +
Sbjct: 106 IKAICTLALARKVWPDAEAHNISALI--YMISKGSDKARELLKGAHRADADIILTANILM 163

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
            ++      +   ++ E+ +   E   +P I    + +
Sbjct: 164 HILY-----HLNIQSIEELYTASEDARIPRILNFGKHR 196


>gi|291393623|ref|XP_002713390.1| PREDICTED: three prime repair exonuclease 1-like [Oryctolagus
           cuniculus]
          Length = 322

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 67/193 (34%), Gaps = 38/193 (19%)

Query: 10  IVFDIETTGLDSKNDRIIEIG--AVELLDYS----------------KTNRTFQVFLCPN 51
           I  D+E TGL     +I E+   AV                      +      + + P 
Sbjct: 23  IFLDLEATGLPFSQPKITELCLLAVHRCALESAPPSEGPPAAVPQPPRVVDKLSLCVAP- 81

Query: 52  GRKNSPEALKLHGITDEFLK--DKPSFSS-IFSEFWDFFNEQNAE--WIAHN-AKFDVGF 105
           G+  SP A K+ G++   L    +  F   + +    F   Q      +AHN  ++D   
Sbjct: 82  GKACSPAASKITGLSTAALAAHGRQRFDDNLVTLLLAFLQRQPVPWCLVAHNGDRYDFPL 141

Query: 106 INAELQRINK-DPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGITISH 154
           + AEL  +   + LD +  +D+++  +            P     L S+  R YG     
Sbjct: 142 LQAELATLGLSNALDSAFCVDSMAALKALEQSSSPSEHSPRKSYSLGSIYTRLYGQAPP- 200

Query: 155 RSKHGALLDSHLL 167
              H A  D   L
Sbjct: 201 -ESHTAEGDVLAL 212


>gi|302767276|ref|XP_002967058.1| hypothetical protein SELMODRAFT_87763 [Selaginella moellendorffii]
 gi|300165049|gb|EFJ31657.1| hypothetical protein SELMODRAFT_87763 [Selaginella moellendorffii]
          Length = 397

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 74/220 (33%), Gaps = 13/220 (5%)

Query: 9   KIVFDIETTGLDSKN--DRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHG 64
            +V D E T   +      IIE    +  +       +FQ ++ P      +    +L G
Sbjct: 112 FVVIDFEATCDSTVFFPQEIIEFPSVLVAVHSLSVEDSFQTYVKPTFNPQLTDFCKRLTG 171

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAE----WIAHNAKFDVGFINAELQRINK--DPL 118
           I    + +  + +    +   +  ++  +     +     +D   +     R+     P 
Sbjct: 172 IEQTQVDNGMALAEALVKHDKWLEDKGVKSKRFGVITWTDWDCKVMLDFECRLKGLTKPS 231

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             ++ I+  S  + K    + +L    +  G+    R  H  L D+   + + ++++  G
Sbjct: 232 YFNKWINLKSCFQEKF-GDKFNLKKAVQHAGLQWQGRE-HCGLDDAKNTASLAMELVKRG 289

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
            QI F       R       +   +  LK+      R + 
Sbjct: 290 MQIGFTQH-QSSRKPAITNISSEFMPKLKKILEALPRSSD 328


>gi|225025590|ref|ZP_03714782.1| hypothetical protein EIKCOROL_02492 [Eikenella corrodens ATCC
           23834]
 gi|224941628|gb|EEG22837.1| hypothetical protein EIKCOROL_02492 [Eikenella corrodens ATCC
           23834]
          Length = 238

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 57/173 (32%), Gaps = 23/173 (13%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE---- 58
           + N +     D+E TGL+ ++DRIIE   V            + +      +        
Sbjct: 48  KPNPLNLCWLDMEMTGLNPEHDRIIEAAVVITDADLNILAQSESYAIHQSDELLEGMDAW 107

Query: 59  ---ALKLHGIT----DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
                +  G+T    D  L +      +      +  +  +    +    D  F+   + 
Sbjct: 108 NTSTHERTGLTQRVKDSTLSEAEVEQRLLDFIAQWIPQGTSPLCGNTVHQDRRFMQRYMP 167

Query: 112 RINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++       +  + TL  +ARR HP            Y  + S +  H AL D
Sbjct: 168 KLEAWFHYRNLDVSTLKELARRWHP----------AAYK-SFSKKGSHRALDD 209


>gi|323141646|ref|ZP_08076527.1| exonuclease [Phascolarctobacterium sp. YIT 12067]
 gi|322413861|gb|EFY04699.1| exonuclease [Phascolarctobacterium sp. YIT 12067]
          Length = 216

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 71/211 (33%), Gaps = 19/211 (9%)

Query: 8   RKIVFDIE-TT---------GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNS 56
           + +V D E TT         G       IIEIGAV+L     T+    Q F+ P+     
Sbjct: 3   KFLVVDFEFTTYERPVGRPRGF---FSEIIEIGAVKLDGEPLTDCGRIQSFVKPHFYPKQ 59

Query: 57  P-EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             +++    IT + ++    F ++  E    +      ++A   + D   +    +R   
Sbjct: 60  AKDSMDFCMITAKDMQQAIEFPAMVQELAALYESGETYFVAWGTE-DYKVLQTGCERHKI 118

Query: 116 DPLDPSRIIDTLSIARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +          L++A R          L    +   +  +    H A  D++    + I+
Sbjct: 119 ENPVKYEDYLDLALAYRLWKGDDYTTGLKKATEEQEVNTAGL-WHTAFDDANNTGKLLIE 177

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204
           M   G ++   F   E    +   +      
Sbjct: 178 MFNRGWKLEDFFVAREAYEAERAARQAERAK 208


>gi|332141096|ref|YP_004426834.1| exodeoxyribonuclease I [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551118|gb|AEA97836.1| exodeoxyribonuclease I [Alteromonas macleodii str. 'Deep ecotype']
          Length = 478

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVF-LCPNGRKNSPEALKLHGITDEF- 69
           D ET G   + D   +  AV   +D +   +   +     N     PEA  + GIT +  
Sbjct: 12  DFETFGTSPQKDLPCQFAAVRTDMDLNVVGKPINIMSAIANDYLPHPEACLVTGITPQQT 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           ++D  + +   ++ +   +  N   +  N+ +FD       F        +++  + +  
Sbjct: 72  IRDGSNEADFAAKIYHEMSTPNTCSVGFNSIRFDDEVSRYLFYRNFYDPYSREWRNGNSR 131

Query: 124 IDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            D + +AR  +               S    L +L     I   H + H AL D +  
Sbjct: 132 WDIIDVARACYALRPDGINWPLREDGSPSFRLEALTAANNI--GHDNAHDALNDVYAT 187


>gi|319653072|ref|ZP_08007175.1| hypothetical protein HMPREF1013_03790 [Bacillus sp. 2_A_57_CT2]
 gi|317395244|gb|EFV75979.1| hypothetical protein HMPREF1013_03790 [Bacillus sp. 2_A_57_CT2]
          Length = 309

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 28/229 (12%)

Query: 1   MIRKNKMRKIVFDIET----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKN 55
           M    ++  I FD E      G+  ++   I +GAV++   +     F  F+ P      
Sbjct: 1   MAELKQL--IFFDFEMLCSKNGMLFEDMEAIRLGAVKVELETGKVTGFDRFIRPQQDSPL 58

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRIN 114
           SP   +L GI+D  LK    FS +F +F  +    + A + + +   D+  + A+  R N
Sbjct: 59  SPFCKELTGISDSDLKTADDFSEVFKDFLFWVGGVKKARFYSWSTS-DILRLKADAFRHN 117

Query: 115 KDPLD----PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                      R +D  +I  ++   +   +      Y ++      H  + D++    +
Sbjct: 118 LPQATIDKITKRYVDFQAIFTKRASRTAASVEKALSFYDLSFIGEPHHP-MYDAYNTLRI 176

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           Y              ++ E++  K +   +      + + P   R+++E
Sbjct: 177 Y--------------QSFEEQNVKTDFIMLQQFIFQEAELPPIERLSQE 211


>gi|195382354|ref|XP_002049895.1| GJ21843 [Drosophila virilis]
 gi|194144692|gb|EDW61088.1| GJ21843 [Drosophila virilis]
          Length = 286

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 62/198 (31%), Gaps = 30/198 (15%)

Query: 10  IVFDIETTG------LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           I  D E T          +   IIE    +  L   K    F  ++ P    + S    +
Sbjct: 71  IAVDFEATCWEKQAPPQWREAEIIEFPAVLVNLKTGKIEAEFHKYIMPIESPRLSTYCTE 130

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAHNAKFDV 103
           L GI  + +       +    F ++  ++                  N  ++     +D 
Sbjct: 131 LTGIEQKTVDTGVPLQTALMMFHEWLRKELRARNLLLPKMSKSNILGNCAFVTW-TDWDF 189

Query: 104 GFINA--ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           G        ++  +     ++ ID  ++ R  +     + +      G+    R  H  +
Sbjct: 190 GICLHKECTRKRMRKAPYFNQWIDVRAVYREWYKYRPCNFSDALSHVGLAFEGR-AHSGI 248

Query: 162 LDSHLLSDVYIKMMVGGS 179
            D+  L  +  KM+  G+
Sbjct: 249 DDAKNLGALMCKMVRDGA 266


>gi|307701951|ref|ZP_07638959.1| DNA polymerase III subunit epsilon [Streptococcus mitis NCTC 12261]
 gi|307616596|gb|EFN95785.1| DNA polymerase III subunit epsilon [Streptococcus mitis NCTC 12261]
          Length = 117

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M R      I FD+E    +       +I++ AV   D  +    +  ++          
Sbjct: 1   MERLED--YIAFDLE---FNQHEGQTHLIQVSAVRFRDGQEIA-AYDSYVH-TSVPLKSF 53

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAE 109
              L GIT E LKD P    +  +F +F        + +NA   D+  +   
Sbjct: 54  INGLTGITAETLKDAPPVEKVIKDFQEFVGS--LPMVGYNAAKSDLPILAEH 103


>gi|227504725|ref|ZP_03934774.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC
           6940]
 gi|227198735|gb|EEI78783.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC
           6940]
          Length = 451

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 17/168 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA---LKLH 63
           +     D+ET   +     + +IGAV   D  +       +LC         A   + +H
Sbjct: 99  LNFTAVDVETA--NDDWGSVCQIGAVRFRDGQEVESR--TWLCTPPPGLEEFADINISIH 154

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI  E + D   F++  +E ++F  E     +AHNA+FD   + + L++ +   +    +
Sbjct: 155 GIKPEDVADAQPFAAAAAELFEFLGED--VLVAHNAQFDSTALRSGLRKASAS-IPEITL 211

Query: 124 IDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +L++AR          + + L ++    G        H A  D+  
Sbjct: 212 ACSLALARDASKAGVIDVANHKLPTVASFCG--AEDFQHHEATADARA 257


>gi|188994147|ref|YP_001928399.1| probable exonuclease [Porphyromonas gingivalis ATCC 33277]
 gi|188593827|dbj|BAG32802.1| probable exonuclease [Porphyromonas gingivalis ATCC 33277]
          Length = 260

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 59/158 (37%), Gaps = 20/158 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE-----LLDYSKTNRTF---QVFLCP--NGRKNSPE 58
            +V D ETTGL +  D    I  V+      + +   +  F   +  +C        SPE
Sbjct: 69  FLVIDTETTGLPA--DETQFISGVDAPAPVSVGWQLLDFRFRCIEEVVCRLSTDEPVSPE 126

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A  LHGITD  L        +++      + +     AHN  F    +  +++R   DP 
Sbjct: 127 AAALHGITDASLHGDDP-HEVYARLLGAVS-KAKVLSAHNLAFHRSVLVYDMRRRGFDPS 184

Query: 119 DPSRIIDTLSI-----ARRKHPS-SRNDLNSLCKRYGI 150
               + D  ++         + S     L  L + +G+
Sbjct: 185 PLFSLDDYCTMEAGVDFTHLYGSCGTWKLPRLTELFGV 222


>gi|170587529|ref|XP_001898528.1| Smfn protein [Brugia malayi]
 gi|158594003|gb|EDP32594.1| Smfn protein, putative [Brugia malayi]
          Length = 184

 Score = 62.2 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 59/176 (33%), Gaps = 23/176 (13%)

Query: 1   MIRKNKMRKIV-FDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNS-- 56
           M + N++R+IV  D E TGLD  +  I+EI  A+   D         + +          
Sbjct: 1   MSKANRVRRIVWVDCEMTGLDVSSKTIVEIACAITEADLMVVEEGLNLVISQPKEVLEGM 60

Query: 57  ----PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINA 108
                     +G+  E L  K +     +E   +  +           ++   D  F+  
Sbjct: 61  DNWCKATFASNGLLQEILSSKITMKEAENEILKYVRQHTDSGMCPLGGNSVGSDRIFLQK 120

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  + K     +  + ++  + +R +P            Y       + H AL D
Sbjct: 121 YMPTLEKHLHYRNIDVSSIKELVKRWYP----------DVYARKPQKENTHRALND 166


>gi|46116822|ref|XP_384429.1| hypothetical protein FG04253.1 [Gibberella zeae PH-1]
 gi|83288434|sp|Q4IEV5|REXO4_GIBZE RecName: Full=RNA exonuclease 4
          Length = 319

 Score = 62.2 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 63/167 (37%), Gaps = 13/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D E  G+         +  V ++D+    + +  ++ P  +  +     + GI+ 
Sbjct: 132 KYIAIDCEMVGVGPGGHE-SALARVSIVDFHGV-QIYDSYVKPKEKVTNWR-TAVSGISQ 188

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++    F  + +E       +    + H+ K D+  +   L    KD  D ++     
Sbjct: 189 KSMRFARDFEEVQAEIDKLL--RGRILVGHDLKHDLEAL--ILSHPGKDIRDTAKF---- 240

Query: 128 SIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIK 173
           S  ++     +  L  L ++  G+ I     H ++ D+     ++ K
Sbjct: 241 SGFKKYANGRKPSLRVLAQQLLGVEIQGGE-HSSIEDARATMLLFRK 286


>gi|307149865|ref|YP_003890908.1| exonuclease RNase T/DNA polymerase III [Cyanothece sp. PCC 7822]
 gi|306986665|gb|ADN18543.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
          Length = 292

 Score = 62.2 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 14/166 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF----QVFLCPNGRKNSPEALKLHGI 65
           ++ D ET G D  + +++E+GAV    YS T +         +  +   +S +A  ++ I
Sbjct: 8   LIIDSETDG-DKDHPKVLEVGAVL---YSVTGQCMLSCGSSLIATDA--DSNQAYWINKI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E  +  P     F  +           +AHNA FD   I         D +      D
Sbjct: 62  VPEATQLCPQQQQYFLNWLQAAYSCADVIVAHNANFDKEVIKKSTWAQKWDKIWLCTYKD 121

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                ++   + + DL SL + YGI IS    H A+ D  LL +V+
Sbjct: 122 FELFPKQY--NGKRDLISLSQFYGIGIS--CTHRAIDDCLLLKEVF 163


>gi|195162331|ref|XP_002022009.1| GL14413 [Drosophila persimilis]
 gi|194103907|gb|EDW25950.1| GL14413 [Drosophila persimilis]
          Length = 223

 Score = 62.2 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 70/216 (32%), Gaps = 28/216 (12%)

Query: 10  IVFDIETTGLDSKND------RIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           I  D E T  +++         IIE    +  L        F  ++ P    + S     
Sbjct: 8   ISVDFEATCWENQPAQQFRLSEIIEFPANLVNLKTGMVEAEFHKYVMPVESPQLSEYCTS 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAH-NAKFD 102
           L GI  + ++      +  + F ++  ++                  N  ++   N  F+
Sbjct: 68  LTGIQQKTVEAGVPLQTALNSFIEWLKKELSARNLVLPKMSMTNPQGNCFFVTWTNWDFE 127

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
                   ++  + P   ++ ID  +I ++ +       N+  +   +T   R  H  + 
Sbjct: 128 TCLAKECARKNIRKPTCFNQWIDAKAIYKKWYKYCPFSFNNALEHVRLTFQGR-AHSGMH 186

Query: 163 DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
           D+  L  +  KM   G+  +        +   E + 
Sbjct: 187 DAKNLGSLICKMFRDGAPFSITKDLTPHKELNENRG 222


>gi|160874834|ref|YP_001554150.1| exonuclease I [Shewanella baltica OS195]
 gi|160860356|gb|ABX48890.1| Exodeoxyribonuclease I [Shewanella baltica OS195]
 gi|315267073|gb|ADT93926.1| Exodeoxyribonuclease I [Shewanella baltica OS678]
          Length = 472

 Score = 62.2 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 57/179 (31%), Gaps = 27/179 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G +   DR  +   +   LD +        +         SPEA+ + GIT +  
Sbjct: 15  DYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGITPQLA 74

Query: 70  -LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------D 119
            LK  P  +         F++ N     +N+ +FD         R   DP          
Sbjct: 75  NLKGVP-ETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNS 133

Query: 120 PSRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              IID +       P                L  L +  G  +SH   H A+ D +  
Sbjct: 134 RWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANG--LSHEKAHDAMSDVYAT 190


>gi|28573607|ref|NP_611632.3| snipper, isoform D [Drosophila melanogaster]
 gi|16769080|gb|AAL28759.1| LD16074p [Drosophila melanogaster]
 gi|28380656|gb|AAM68199.2| snipper, isoform D [Drosophila melanogaster]
 gi|220943044|gb|ACL84065.1| CG42257-PD [synthetic construct]
 gi|220953182|gb|ACL89134.1| CG42257-PD [synthetic construct]
          Length = 281

 Score = 62.2 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 30/198 (15%)

Query: 10  IVFDIETTG------LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           I  D E T        + +   IIE    +  L   K    F  ++ P    + S    +
Sbjct: 66  IAVDFEATCWEKQAPPEWREAEIIEFPAVLVNLKTGKIEAEFHQYILPFESPRLSAYCTE 125

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAHNAKFDV 103
           L GI  + +       +    F ++   +                  N  ++     +D 
Sbjct: 126 LTGIQQKTVDSGMPLRTAIVMFNEWLRNEMRARNLTLPKMNKSNILGNCAFVTW-TDWDF 184

Query: 104 G-FINAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           G  +  E  R   + P   ++ ID  +I R  +     +        G+    +  H  +
Sbjct: 185 GICLAKECSRKGIRKPAYFNQWIDVRAIYRSWYKYRPCNFTDALSHVGLAFEGK-AHSGI 243

Query: 162 LDSHLLSDVYIKMMVGGS 179
            D+  L  +  KM+  G+
Sbjct: 244 DDAKNLGALMCKMVRDGA 261


>gi|149203420|ref|ZP_01880390.1| DNA polymerase III subunit epsilon [Roseovarius sp. TM1035]
 gi|149143253|gb|EDM31292.1| DNA polymerase III subunit epsilon [Roseovarius sp. TM1035]
          Length = 172

 Score = 61.8 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 14/128 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKT-----NRTFQVFLCPNGRKNSPEALK 61
           +V D+ETTGL  + D +I++  +     L+  +      +R F+    P G   S EA  
Sbjct: 50  LVLDVETTGLSHEADEVIQLAMLPFTYELNTGRILEIDHDRGFEGLREP-GVPISEEANL 108

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           + G+T E +  +    +I     +         IAHN+ FD   +        + P   +
Sbjct: 109 VTGLTAETVAGQ----TINGAIVEALVADADLVIAHNSSFDRVMVEKLWPCFAEKPWGCT 164

Query: 122 -RIIDTLS 128
              ID L 
Sbjct: 165 LTSIDWLR 172


>gi|327265893|ref|XP_003217742.1| PREDICTED: three prime repair exonuclease 1-like [Anolis
           carolinensis]
          Length = 329

 Score = 61.8 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 69/205 (33%), Gaps = 43/205 (20%)

Query: 9   KIVFDIETTGLDSKNDRIIEIG-------AVELLDYS-----------KTNRTFQVFLCP 50
            +  D+E TGL     +I E+        A+E L Y            +      V + P
Sbjct: 15  FVFMDLEATGLPPSRPKIAEMCLFAVTRHALENLQYRNSHPKPIPLFPRVVDKLCVCINP 74

Query: 51  NGRKNSPEALKLHGITDEFLK--DKPSFS-SIFSEFWDFFNEQNAE--WIAHN-AKFDVG 104
           + +  +P A  + G+T+E      K  F+  I      FF  Q+     +AHN   +D  
Sbjct: 75  D-KPFTPMASSITGLTNEMFSWNKKQKFNLDILHMMTAFFIRQHPPICLVAHNGCSYDFP 133

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPS-----------------SRNDLNSLCKR 147
            + AEL  +    LD     DTL   +                       +  L  +  R
Sbjct: 134 LLKAELSALGLSGLDGIYCADTLKAMKALDKENIQLSQFIYESKQCGKKMKYGLQDMYFR 193

Query: 148 YGITISHRSKHGALLDSHLLSDVYI 172
           +       + H A  D   L +++ 
Sbjct: 194 FYKAYPP-NSHSAEGDVITLINIFQ 217


>gi|157103173|ref|XP_001647854.1| three prime repair exonuclease 1, putative [Aedes aegypti]
 gi|108884686|gb|EAT48911.1| three prime repair exonuclease 1, putative [Aedes aegypti]
          Length = 320

 Score = 61.8 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 23/174 (13%)

Query: 9   KIVFDIETTGL-DSKNDRIIEIGAVEL-------LDYSKTNRTFQ--VFLCPNGRKNSPE 58
            + FD+ETT L   K  +I EI  +             +  R      F     R   P 
Sbjct: 8   FVFFDLETTDLIGIKTPKITEISLIACSRKHLLDTKRGELPRVLHKQTFCLNPQRMIHPR 67

Query: 59  ALKLHGITDEFLKDKPSFSS-IFSEFWDFFNEQNAE--WIAHN-AKFDVGFINAELQRIN 114
           A +  G+ ++ L+D+  F          F     A    +AHN  +FD   +  EL+ +N
Sbjct: 68  ASETTGLYNDLLEDESKFDENTAQLIVLFLRRLQAPTCLVAHNGNRFDFVILKKELESLN 127

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
               D +  +D+L + +              +      +  +    L D  L +
Sbjct: 128 AQLPDDTYCVDSLPLFQALEQ---------AREQKAKAAQENADNELADLELCA 172


>gi|34540032|ref|NP_904511.1| exonuclease [Porphyromonas gingivalis W83]
 gi|34396343|gb|AAQ65410.1| exonuclease [Porphyromonas gingivalis W83]
          Length = 260

 Score = 61.8 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 59/158 (37%), Gaps = 20/158 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE-----LLDYSKTNRTF---QVFLCP--NGRKNSPE 58
            +V D ETTGL +  D    I  V+      + +   +  F   +  +C        SPE
Sbjct: 69  FLVIDTETTGLPA--DETQFISGVDAPAPVSVGWQLLDFRFRCIEEVVCRLSTDEPVSPE 126

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           A  LHGITD  L        +++      + +     AHN  F    +  +++R   DP 
Sbjct: 127 AAALHGITDASLHGDDP-HEVYARLLGAVS-KAKVLSAHNLAFHRSVLVYDMRRRGFDPS 184

Query: 119 DPSRIIDTLSI-----ARRKHPS-SRNDLNSLCKRYGI 150
               + D  ++         + S     L  L + +G+
Sbjct: 185 PLFSLDDYCTMEAGVDFTHLYGSCGTWKLPRLTELFGV 222


>gi|91793639|ref|YP_563290.1| exonuclease I [Shewanella denitrificans OS217]
 gi|91715641|gb|ABE55567.1| Exodeoxyribonuclease I subunit C [Shewanella denitrificans OS217]
          Length = 470

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 57/179 (31%), Gaps = 27/179 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLHGITDEFL 70
           D ET G +   DR  +   +            + F C        SPEA+ + GIT + L
Sbjct: 13  DYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKLATDYLPSPEAILITGITPQ-L 71

Query: 71  KD--KPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------D 119
            +      +         F+++N   + +N+ +FD         R   DP          
Sbjct: 72  ANMKGIPETEFMGRINALFSQENTCVVGYNSLRFDDEVSRYGFYRNFIDPYAREWQNGNS 131

Query: 120 PSRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              IID +       P                L  L +  G  +SH   H A+ D +  
Sbjct: 132 RWDIIDLVRACYAFRPDGINWPRKEDGTVSFKLELLTQANG--LSHEKAHDAMSDVYAT 188


>gi|237785970|ref|YP_002906675.1| oligoribonuclease [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758882|gb|ACR18132.1| putative oligoribonuclease [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 222

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 62/171 (36%), Gaps = 27/171 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFL---CPNGRKNSPEALKLH 63
           R +  D E TGLD     ++EI A+    + +  +    + +        K      ++H
Sbjct: 24  RIVWIDCEMTGLDPSTHVLVEIAAIVTDANLNILDEGLDIVIHATDDELAKMDDFVTQMH 83

Query: 64  ---GITDE----FLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINK 115
              G+TDE     +    + + +      + N  + A    ++   D  FI A + ++  
Sbjct: 84  TKNGLTDEIRKSTVSVGEAENEVLDYVKKWVNAPRTAPLAGNSIASDRKFIAAYMPKL-- 141

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           D     R+ID  SI   A R +P          K Y         H AL D
Sbjct: 142 DEFLHYRMIDVSSIKELAHRWYP----------KVYQNQPKKGLAHRALAD 182


>gi|226349314|ref|YP_002776428.1| hypothetical protein ROP_pROB01-00770 [Rhodococcus opacus B4]
 gi|226245229|dbj|BAH55576.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 176

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R  V D+E+T LD     IIEI  ++    +    T    + P      P+A  +HGI  
Sbjct: 6   RAAVLDVESTNLD---GSIIEICVLDAATGNPLLDT---LVDPGDVPMHPDAYAVHGIAL 59

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             L   P +S++               ++++++FD G +  +  R   DP  
Sbjct: 60  ADLIGAPGWSTVHQALIAV--TTGRVTLSYHSEFDRGRVLHDCARHGLDPAH 109


>gi|255655442|ref|ZP_05400851.1| putative exonuclease [Clostridium difficile QCD-23m63]
 gi|296451434|ref|ZP_06893171.1| exonuclease superfamily protein [Clostridium difficile NAP08]
 gi|296880217|ref|ZP_06904183.1| exonuclease superfamily protein [Clostridium difficile NAP07]
 gi|296259701|gb|EFH06559.1| exonuclease superfamily protein [Clostridium difficile NAP08]
 gi|296428806|gb|EFH14687.1| exonuclease superfamily protein [Clostridium difficile NAP07]
          Length = 1039

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 12/156 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIE +GLD  N  I+E+GAV++ D+     T++  +                +    
Sbjct: 12  VFLDIEVSGLDCLNSEILEVGAVKVKDWKI--YTYESLIKNKFEVPIEVFSVCKNLDKND 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+       +     +F   +++  I H+      F    + ++       ++ ID + +
Sbjct: 70  LEIANEIELVEDRLVNFV--EDSFIICHDLSLKKKFFEYYMPKLK------NKFIDLIEL 121

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164
           A    P  +   L  L        + + ++ AL D+
Sbjct: 122 AVILEPYYKDYSLEYLKNTL-TNFNSKVENRALSDA 156


>gi|255306398|ref|ZP_05350569.1| putative exonuclease [Clostridium difficile ATCC 43255]
          Length = 1039

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 60/156 (38%), Gaps = 12/156 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIE +GLD  N  I+E+GAV++ D+     T++  +                +    
Sbjct: 12  VFLDIEVSGLDCLNSEILEVGAVKVKDWKI--YTYESLIKNKFEVPIEVFSVCKNLDKND 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+       +     +F   +++  I H+      F+   + ++       ++ ID + +
Sbjct: 70  LEIANEIELVEDRLVNFV--EDSFIICHDLSLKKKFLEYHMPKLK------NKFIDLIEL 121

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164
           A    P  +   L  L        + + ++ AL D+
Sbjct: 122 AVILEPYHKDYSLEYLKNTL-TNCNSKVENRALSDA 156


>gi|117921013|ref|YP_870205.1| exonuclease I [Shewanella sp. ANA-3]
 gi|117613345|gb|ABK48799.1| Exodeoxyribonuclease I subunit C [Shewanella sp. ANA-3]
          Length = 470

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 57/179 (31%), Gaps = 27/179 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK--NSPEALKLHGITDEF- 69
           D ET G +   DR  +   +            + F C        SPEA+ + GIT +  
Sbjct: 13  DYETFGANPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITGITPQLA 72

Query: 70  -LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------D 119
            LK  P  +         F++ N     +N+ +FD         R   DP          
Sbjct: 73  NLKGLP-ETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNT 131

Query: 120 PSRIIDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLL 167
              IID +       P   +            L  L +  G  +SH   H A+ D +  
Sbjct: 132 RWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANG--LSHEKAHDAMSDVYAT 188


>gi|261327261|emb|CBH10237.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 762

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 58/182 (31%), Gaps = 14/182 (7%)

Query: 10  IVFDIETTGLDSKN----DRIIEIGAVELL-DYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
           +V D E T  +         IIE   V +     +    F  ++ P  +   S    +L 
Sbjct: 556 LVVDFEATCEEYAPPSYLHEIIEFPVVVVDAKLQRVITEFHRYVKPKVKPQLSEFCRQLT 615

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFIN-AELQRINKD- 116
           GI  E +        +  +F  ++ +          +         F+    + R     
Sbjct: 616 GIRQEDIDSAAPLEDVIKQFERWYAQTIPPGSRTVLVTDGPADLREFMYVHSVTRQGIRF 675

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P    + ID   +        +  + ++ +        R  H  + D+  ++ + I+M+ 
Sbjct: 676 PSMFYQWIDVKQVFAHFFQCQQGKIKAMLEVLQCPFEGR-LHSGIDDARNIAKIVIRMLE 734

Query: 177 GG 178
            G
Sbjct: 735 VG 736


>gi|72387359|ref|XP_844104.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62360612|gb|AAX81023.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70800636|gb|AAZ10545.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 762

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 58/182 (31%), Gaps = 14/182 (7%)

Query: 10  IVFDIETTGLDSKN----DRIIEIGAVELL-DYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
           +V D E T  +         IIE   V +     +    F  ++ P  +   S    +L 
Sbjct: 556 LVVDFEATCEEYAPPSYLHEIIEFPVVVVDAKLQRVITEFHRYVKPKVKPQLSEFCRQLT 615

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFIN-AELQRINKD- 116
           GI  E +        +  +F  ++ +          +         F+    + R     
Sbjct: 616 GIRQEDIDSAAPLEDVIKQFERWYAQTIPPGSRTVLVTDGPADLREFMYVHSVTRQGIRF 675

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P    + ID   +        +  + ++ +        R  H  + D+  ++ + I+M+ 
Sbjct: 676 PSMFYQWIDVKQVFAHFFQCQQGKIKAMLEVLQCPFEGR-LHSGIDDARNIAKIVIRMLE 734

Query: 177 GG 178
            G
Sbjct: 735 VG 736


>gi|121710064|ref|XP_001272648.1| exonuclease, putative [Aspergillus clavatus NRRL 1]
 gi|119400798|gb|EAW11222.1| exonuclease, putative [Aspergillus clavatus NRRL 1]
          Length = 311

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 59/167 (35%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G+    D    +  V +++++   + +  ++ P           + GI  
Sbjct: 115 KYVAMDCEMVGVGPNPDDDSALARVSIVNFNG-EQVYDSYVRPKEMVTDWR-THVSGIAP 172

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + D  SF  +  E  +  + +    + H    D+  +   L    +D  D S+     
Sbjct: 173 KHMVDARSFELVQKEVAEILDGR--ILVGHAVSNDLDALL--LSHHKRDIRDTSKH---- 224

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I     H ++ D+     +Y +
Sbjct: 225 PAYRKIAGGGSPRLKMLASEFLGLEI-QDGAHSSVEDAKATMLLYRR 270


>gi|225435848|ref|XP_002262814.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 425

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 14/182 (7%)

Query: 9   KIVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLH 63
            +V D E T     +     IIE    +      +   +FQ+++ P      S    +L 
Sbjct: 141 FVVIDFEATCDKEKNPHPQEIIEFPSVLVNSMTGQLEDSFQIYVRPTCNHLLSDFCKELT 200

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINK--D 116
           GI    + +    S        +  ++         +   + +D   +     R  +   
Sbjct: 201 GIQQIQVDNGVLLSEALLMHDRWLEQKGIKHTNFAVVTW-SDWDCRVMLESECRFKRIRK 259

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P   +R I+          + R +L    +R G+    R  H  L D+   + +   +M 
Sbjct: 260 PPYFNRWINLKVPFHEVFGNIRCNLKEAVQRAGLLWEGR-AHCGLDDAKNTARLLAHIMH 318

Query: 177 GG 178
            G
Sbjct: 319 RG 320


>gi|255100457|ref|ZP_05329434.1| putative exonuclease [Clostridium difficile QCD-63q42]
          Length = 1039

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 12/156 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIE +GLD  N  I+E+GAV++ D+     T++  +                +    
Sbjct: 12  VFLDIEVSGLDCLNSEILEVGAVKVKDWKI--HTYESLIKNKFEVPIEVFSVCKNLDKND 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+       +     +F   +++  I H+      F    + ++       ++ ID + +
Sbjct: 70  LEIANEIELVEDRLVNFV--EDSFIICHDLSLKKKFFEYHMPKLK------NKFIDLIEL 121

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164
           A    P  +   L  L        + + ++ AL D+
Sbjct: 122 AVILEPYHKDYSLEYLKNTL-TNCNSKVENRALSDA 156


>gi|149912138|ref|ZP_01900724.1| putative exonuclease I [Moritella sp. PE36]
 gi|149804786|gb|EDM64828.1| putative exonuclease I [Moritella sp. PE36]
          Length = 480

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 57/178 (32%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFL 70
           D ET GL    DR  +   +   +D++        +    +    SPEA  + GIT +  
Sbjct: 19  DYETFGLSPSLDRPSQFAGIRTDMDFNVIGEPDMFYCRQSDDYLPSPEATLITGITPQKT 78

Query: 71  -KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR------ 122
             +  + +         F+ +N   I +N  +FD         R   DP   +       
Sbjct: 79  QAEGVNEAEFSKRIEAQFSHKNTCIIGYNNIRFDDEVTRNIFYRNFYDPYAHTWKDGNSR 138

Query: 123 --IIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             IID +       P                L  L K  GI   H + H A  D +  
Sbjct: 139 WDIIDLMRACYALRPEGIVWPENDDGLPSMRLELLTKANGIE--HANAHDATSDVYAT 194


>gi|319425973|gb|ADV54047.1| Exodeoxyribonuclease I [Shewanella putrefaciens 200]
          Length = 470

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 56/179 (31%), Gaps = 27/179 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK--NSPEALKLHGITDEF- 69
           D ET G +   DR  +   +            + F C        SPEA+ + GIT +  
Sbjct: 13  DYETFGANPARDRPAQFAGIRTDLDLNIIGEPETFYCKQATDYLPSPEAILITGITPQLA 72

Query: 70  -LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------D 119
            LK  P  +         F++ N     +N+ +FD         R   DP          
Sbjct: 73  NLKGIP-ETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNS 131

Query: 120 PSRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              IID +       P                L  L +  G  +SH   H A+ D +  
Sbjct: 132 RWDIIDLVRACYAFRPDGINWSLKDDGSPSFKLEHLTQANG--LSHEKAHDAMSDVYAT 188


>gi|17987512|ref|NP_540146.1| exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|62289682|ref|YP_221475.1| exonuclease [Brucella abortus bv. 1 str. 9-941]
 gi|82699609|ref|YP_414183.1| exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148559385|ref|YP_001258703.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|163842995|ref|YP_001627399.1| hypothetical protein BSUIS_A0756 [Brucella suis ATCC 23445]
 gi|189023932|ref|YP_001934700.1| Exonuclease [Brucella abortus S19]
 gi|225627219|ref|ZP_03785257.1| exonuclease [Brucella ceti str. Cudo]
 gi|225852242|ref|YP_002732475.1| exonuclease [Brucella melitensis ATCC 23457]
 gi|237815173|ref|ZP_04594171.1| exonuclease [Brucella abortus str. 2308 A]
 gi|254688992|ref|ZP_05152246.1| Exonuclease [Brucella abortus bv. 6 str. 870]
 gi|254697126|ref|ZP_05158954.1| Exonuclease [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701504|ref|ZP_05163332.1| Exonuclease [Brucella suis bv. 5 str. 513]
 gi|254707049|ref|ZP_05168877.1| Exonuclease [Brucella pinnipedialis M163/99/10]
 gi|254709843|ref|ZP_05171654.1| Exonuclease [Brucella pinnipedialis B2/94]
 gi|254713845|ref|ZP_05175656.1| Exonuclease [Brucella ceti M644/93/1]
 gi|254717098|ref|ZP_05178909.1| Exonuclease [Brucella ceti M13/05/1]
 gi|254730022|ref|ZP_05188600.1| Exonuclease [Brucella abortus bv. 4 str. 292]
 gi|256031334|ref|ZP_05444948.1| Exonuclease [Brucella pinnipedialis M292/94/1]
 gi|256044415|ref|ZP_05447319.1| Exonuclease [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060846|ref|ZP_05451006.1| Exonuclease [Brucella neotomae 5K33]
 gi|256159453|ref|ZP_05457225.1| Exonuclease [Brucella ceti M490/95/1]
 gi|256254742|ref|ZP_05460278.1| Exonuclease [Brucella ceti B1/94]
 gi|256257240|ref|ZP_05462776.1| Exonuclease [Brucella abortus bv. 9 str. C68]
 gi|256264251|ref|ZP_05466783.1| exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|256369157|ref|YP_003106665.1| exonuclease, putative [Brucella microti CCM 4915]
 gi|260168470|ref|ZP_05755281.1| exonuclease, putative [Brucella sp. F5/99]
 gi|260545566|ref|ZP_05821307.1| exonuclease [Brucella abortus NCTC 8038]
 gi|260563766|ref|ZP_05834252.1| exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260754483|ref|ZP_05866831.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260757703|ref|ZP_05870051.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260761529|ref|ZP_05873872.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883511|ref|ZP_05895125.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261218910|ref|ZP_05933191.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261221922|ref|ZP_05936203.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261314515|ref|ZP_05953712.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317382|ref|ZP_05956579.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261321591|ref|ZP_05960788.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261324839|ref|ZP_05964036.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261752049|ref|ZP_05995758.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261757936|ref|ZP_06001645.1| exonuclease [Brucella sp. F5/99]
 gi|265988419|ref|ZP_06100976.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265990834|ref|ZP_06103391.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265997885|ref|ZP_06110442.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|297248089|ref|ZP_06931807.1| hypothetical protein BAYG_01023 [Brucella abortus bv. 5 str. B3196]
 gi|17983212|gb|AAL52410.1| hypothetical exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|62195814|gb|AAX74114.1| exonuclease, hypothetical [Brucella abortus bv. 1 str. 9-941]
 gi|82615710|emb|CAJ10697.1| Exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148370642|gb|ABQ60621.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|163673718|gb|ABY37829.1| Hypothetical protein BSUIS_A0756 [Brucella suis ATCC 23445]
 gi|189019504|gb|ACD72226.1| Exonuclease [Brucella abortus S19]
 gi|225618054|gb|EEH15098.1| exonuclease [Brucella ceti str. Cudo]
 gi|225640607|gb|ACO00521.1| Exonuclease [Brucella melitensis ATCC 23457]
 gi|237790010|gb|EEP64220.1| exonuclease [Brucella abortus str. 2308 A]
 gi|255999317|gb|ACU47716.1| exonuclease, putative [Brucella microti CCM 4915]
 gi|260096973|gb|EEW80848.1| exonuclease [Brucella abortus NCTC 8038]
 gi|260153782|gb|EEW88874.1| exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260668021|gb|EEX54961.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260671961|gb|EEX58782.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674591|gb|EEX61412.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260873039|gb|EEX80108.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260920506|gb|EEX87159.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|260923999|gb|EEX90567.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261294281|gb|EEX97777.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261296605|gb|EEY00102.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261300819|gb|EEY04316.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261303541|gb|EEY07038.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261737920|gb|EEY25916.1| exonuclease [Brucella sp. F5/99]
 gi|261741802|gb|EEY29728.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|262552353|gb|EEZ08343.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|263001618|gb|EEZ14193.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094510|gb|EEZ18319.1| exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|264660616|gb|EEZ30877.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|297175258|gb|EFH34605.1| hypothetical protein BAYG_01023 [Brucella abortus bv. 5 str. B3196]
 gi|326408745|gb|ADZ65810.1| Exonuclease [Brucella melitensis M28]
          Length = 203

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 16/167 (9%)

Query: 26  IIEIGAVEL--LDYSKTNRTFQVFLCPNGR-----KNSPEALKLHGITDEFL-KDKPSFS 77
           I +IGAV++   +      TF+ ++ P+ R       +P    L GIT+E + +D     
Sbjct: 32  IAQIGAVKIGLENELPILETFKAYVTPHDRYGARYAIAPYFTDLTGITEEQISRDGKPLK 91

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID-----TLSIARR 132
           +  ++   F     A + +     ++  I          P  P+   D      L+    
Sbjct: 92  TALNDLDSF--SDGATFWSWGKD-ELNMIAISCYVEGIAPPIPAPRFDNAVKLLLAAGMP 148

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               +R   N L   YG+       H AL D+  +      ++  G 
Sbjct: 149 VEDLARTPSNKLADYYGLEHPELQGHDALDDARSIGYTLQYLLSSGK 195


>gi|322787625|gb|EFZ13665.1| hypothetical protein SINV_06869 [Solenopsis invicta]
          Length = 254

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 17/179 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDS---KNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-N 55
           M++K +   +V D E T       K   IIE+  AV      K    F  ++ P      
Sbjct: 34  MVQKFEY-LLVLDFEATCERYQVIKPQEIIELPCAVLSTHDWKLKDMFHSYVKPRVHPTL 92

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-FIN 107
           +P   +L GI  E +  +P F  +F  F ++  ++        + ++     +D+   + 
Sbjct: 93  TPFCTELTGIMQETVDGQPYFVDVFPIFCEWLTKRGYFDRPEKSSFVT-CGNWDLKTMLP 151

Query: 108 AELQRINKDPLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            +       P D  +  ID   +           L  +  R  + +  R  H  + D  
Sbjct: 152 NQCDLDGIAPPDQFKQWIDLKHMFCESTGYYPKSLKDMLARLNMPLKGR-LHSGIDDVK 209


>gi|296083880|emb|CBI24268.3| unnamed protein product [Vitis vinifera]
          Length = 431

 Score = 61.8 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 14/182 (7%)

Query: 9   KIVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLH 63
            +V D E T     +     IIE    +      +   +FQ+++ P      S    +L 
Sbjct: 168 FVVIDFEATCDKEKNPHPQEIIEFPSVLVNSMTGQLEDSFQIYVRPTCNHLLSDFCKELT 227

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINK--D 116
           GI    + +    S        +  ++         +   + +D   +     R  +   
Sbjct: 228 GIQQIQVDNGVLLSEALLMHDRWLEQKGIKHTNFAVVTW-SDWDCRVMLESECRFKRIRK 286

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P   +R I+          + R +L    +R G+    R  H  L D+   + +   +M 
Sbjct: 287 PPYFNRWINLKVPFHEVFGNIRCNLKEAVQRAGLLWEGR-AHCGLDDAKNTARLLAHIMH 345

Query: 177 GG 178
            G
Sbjct: 346 RG 347


>gi|170035826|ref|XP_001845768.1| three prime repair exonuclease 1 [Culex quinquefasciatus]
 gi|167878205|gb|EDS41588.1| three prime repair exonuclease 1 [Culex quinquefasciatus]
          Length = 325

 Score = 61.8 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 22/144 (15%)

Query: 1   MIRKNKMRKIVFDIETT---GLDSKNDRIIEIGAVEL-------LDYSKTNRTFQ--VFL 48
           M + +    + FD+ETT   GL  K  +I E+  +           + +  R      F 
Sbjct: 1   MAKLSS--FVFFDLETTDIPGL--KTPKITELSLIACSKLHLLQTKHGEIPRVLHKQTFC 56

Query: 49  CPNGRKNSPEALKLHGITDEFLKDKPSFSS----IFSEFWDFFNEQNAEWIAHN-AKFDV 103
               R   P+A ++ G+ ++ L+++  F      +   F +         +AHN  +FD 
Sbjct: 57  LNPQRLIHPKASEITGLYNDLLENESKFDENTAQLIVLFLERLQSPTC-LVAHNGNRFDF 115

Query: 104 GFINAELQRINKDPLDPSRIIDTL 127
             +  EL+ +     D +  ID+L
Sbjct: 116 PILKKELEALKAHLPDATYCIDSL 139


>gi|146292669|ref|YP_001183093.1| exonuclease I [Shewanella putrefaciens CN-32]
 gi|145564359|gb|ABP75294.1| Exodeoxyribonuclease I subunit C [Shewanella putrefaciens CN-32]
          Length = 470

 Score = 61.8 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 56/179 (31%), Gaps = 27/179 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK--NSPEALKLHGITDEF- 69
           D ET G +   DR  +   +            + F C        SPEA+ + GIT +  
Sbjct: 13  DYETFGANPARDRPAQFAGIRTDLDLNIIGEPETFYCKQATDYLPSPEAILITGITPQLA 72

Query: 70  -LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------D 119
            LK  P  +         F++ N     +N+ +FD         R   DP          
Sbjct: 73  NLKGIP-ETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNS 131

Query: 120 PSRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              IID +       P                L  L +  G  +SH   H A+ D +  
Sbjct: 132 RWDIIDLVRACYAFRPDGINWPLKDDGSPSFKLEHLTQANG--LSHEKAHDAMSDVYAT 188


>gi|164688423|ref|ZP_02212451.1| hypothetical protein CLOBAR_02068 [Clostridium bartlettii DSM
           16795]
 gi|164602836|gb|EDQ96301.1| hypothetical protein CLOBAR_02068 [Clostridium bartlettii DSM
           16795]
          Length = 961

 Score = 61.8 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
            P    I  +F +F   ++   I HN +F+  F+   +  +    LD   +   L   +R
Sbjct: 4   APKLEEIKDDFLEFI--EDKIIICHNKQFEEKFLEFHIGELKNKFLDSMELACVLEPFQR 61

Query: 133 KHPSSRNDLNSLCKRYGITIS-HRSKHGALLDSHLLSDVYIKMMV 176
           +      +L+ L K+  IT   +   H AL D+    DV   +++
Sbjct: 62  EF-----NLDYLKKQ--ITKDKNDEIHRALSDTIDTIDVVNALIL 99


>gi|83309140|ref|YP_419404.1| inhibitor of the KinA pathway to sporulation [Magnetospirillum
           magneticum AMB-1]
 gi|82943981|dbj|BAE48845.1| Inhibitor of the KinA pathway to sporulation [Magnetospirillum
           magneticum AMB-1]
          Length = 188

 Score = 61.8 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 24/184 (13%)

Query: 10  IVFDIE-TT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPE 58
           +V+D+E TT             ++  ++++GAV L D ++      + + P      S  
Sbjct: 8   VVYDLEYTTWEGARERRWSGPGEHREVVQVGAVRLDDGAE----LSLLVKPRLNPGLSTY 63

Query: 59  ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              L GIT + +      F        DF     A+    N   D G +           
Sbjct: 64  FTDLTGITQDQVDRAGMDFPEALCRLADF--AAGADL-GSNGA-DEGVLRENCALTGCAF 119

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSL--CKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               R  D L+        ++  + S      +G+    R  H AL D+  ++ V   ++
Sbjct: 120 PFDGRCRD-LAPLLITAAGAQAHIYSCEMAATFGLNADQR-AHDALGDARQVAQVLRHLL 177

Query: 176 VGGS 179
             G 
Sbjct: 178 KTGR 181


>gi|224062684|ref|XP_002197642.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 348

 Score = 61.8 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 61/185 (32%), Gaps = 23/185 (12%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   +  ++ E+    +++Y   +  +  ++ P          +  GIT 
Sbjct: 143 KYVAIDCEMVGTGPQG-KVSELARCSVVNYEG-DVIYDKYIRPE-LPIVDYRTRWSGITK 199

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT- 126
           + +K+   F +  +E      ++    + H    D   +               R  DT 
Sbjct: 200 QHMKNAIPFKAAQAEILKILKDK--IVVGHAIHNDFQALKYFH--------PKDRTRDTS 249

Query: 127 ----LSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               L         +   L +L +      I +  R  H ++ D+    ++Y +++    
Sbjct: 250 QSPALKKRAGLPIRTNVSLKNLARHLLHKNIQV-GRKGHSSVEDAQTAMELY-RLVEVQW 307

Query: 180 QINFG 184
           +    
Sbjct: 308 EKELA 312


>gi|217973824|ref|YP_002358575.1| exonuclease I [Shewanella baltica OS223]
 gi|217498959|gb|ACK47152.1| Exodeoxyribonuclease I [Shewanella baltica OS223]
          Length = 470

 Score = 61.8 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 57/179 (31%), Gaps = 27/179 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G +   DR  +   +   LD +        +         SPEA+ + GIT +  
Sbjct: 13  DYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQTPDYLPSPEAILITGITPQLA 72

Query: 70  -LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------D 119
            LK  P  +         F++ N     +N+ +FD         R   DP          
Sbjct: 73  NLKGIP-ETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNS 131

Query: 120 PSRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              IID +       P                L  L +  G  +SH   H A+ D +  
Sbjct: 132 RWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANG--LSHEKAHDAMSDVYAT 188


>gi|169847019|ref|XP_001830222.1| oligoribonuclease [Coprinopsis cinerea okayama7#130]
 gi|116508698|gb|EAU91593.1| oligoribonuclease [Coprinopsis cinerea okayama7#130]
          Length = 216

 Score = 61.8 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 64/181 (35%), Gaps = 19/181 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRK---NSP 57
           +  +    +  D+E TGL+ + D+IIEI   +   +    +   Q  +            
Sbjct: 8   LEFDDGPIVWVDLEMTGLNPQKDKIIEIAVLITNGNLELVDDGIQYIIRAEKSLLDGMDE 67

Query: 58  EALKLH---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAE 109
              K H   G+T   L+   +   +  E   +       ++      ++   D  F+ AE
Sbjct: 68  WCTKQHGQSGLTQACLRSPYTTEYVKKEVLAYIKKWIPRQRVGVLAGNSVHVDRTFLAAE 127

Query: 110 LQRINKDPLDPSRIIDTLSIARRK---HPSSRNDLNSLCKRY---GITISH-RSKHGALL 162
           +  I          + ++ +AR        S  +L  L +R+    +   +  S H AL 
Sbjct: 128 MPEIVDWLHYRIIDVSSVKVARLSVSPFDVSSYELQELSRRWFPNKVPPKNPESSHRALD 187

Query: 163 D 163
           D
Sbjct: 188 D 188


>gi|242057047|ref|XP_002457669.1| hypothetical protein SORBIDRAFT_03g011390 [Sorghum bicolor]
 gi|241929644|gb|EES02789.1| hypothetical protein SORBIDRAFT_03g011390 [Sorghum bicolor]
          Length = 424

 Score = 61.4 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 14/182 (7%)

Query: 9   KIVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D E T     +     IIE    +      K    FQ ++ P   +  +    +L 
Sbjct: 140 FVVIDFEATCDKVNNPFPQEIIEFPSVLVNSATGKLEECFQTYVRPTYHQFLTDFCKELT 199

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINK--D 116
           GI    +               +  ++         +   + +D   +     R  +   
Sbjct: 200 GIQQIQVDRGVPLGEALLMHDKWLEDKGIKNTNFAIVTW-SNWDCRTMLESECRFKRIRK 258

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P   +R I+     +  +   R +L    +  G+T   R  H  L D+   + +   MM 
Sbjct: 259 PPYFNRWINLKVPFQEVYGDVRCNLKEAVQLAGLTWEGR-AHCGLDDARNTARLLALMMH 317

Query: 177 GG 178
            G
Sbjct: 318 RG 319


>gi|158341366|ref|YP_001522531.1| exonuclease [Acaryochloris marina MBIC11017]
 gi|158311607|gb|ABW33217.1| exonuclease [Acaryochloris marina MBIC11017]
          Length = 194

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 15/173 (8%)

Query: 9   KIVFDIETTGLD-----SKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRK-NSPEALK 61
            ++ D+E T  +      K    IEIGAV +     +    F VF+ P      +    +
Sbjct: 11  YLIVDLEATCCNTFSIPHKETETIEIGAVIVESVGLEIIDEFTVFIKPIRHPKLTDFCTE 70

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           L  I    L+D P+F      F  +F + +N+ + +    +D   +  E +         
Sbjct: 71  LTTIKQTDLEDAPTFPQAVGTFKRWFEQYENSVFCSW-GDYDKNQLERESKYHKIPYPMG 129

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDV 170
               +          + ++    + K     G+++   + H  + D+  L+ +
Sbjct: 130 EEHFNLKKQFSLALRTKKHY--GMAKALMTVGLSLDG-THHRGIDDARNLAKL 179


>gi|91217110|ref|ZP_01254072.1| hypothetical protein P700755_03918 [Psychroflexus torquis ATCC
           700755]
 gi|91184710|gb|EAS71091.1| hypothetical protein P700755_03918 [Psychroflexus torquis ATCC
           700755]
          Length = 424

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 64/180 (35%), Gaps = 17/180 (9%)

Query: 9   KIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            ++ DIET+GL  K         II+I  V         +   + +  +  K +  +  +
Sbjct: 242 YLIVDIETSGLPQKTANGTNYPEIIQIAWVVTNKKGLVLKKNSIIIETDFIKENNYSSIV 301

Query: 63  HGITDEFLKDKP--SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLD 119
           + I  E +  K          +  +     +   ++HN  FD+  +     ++   +PL 
Sbjct: 302 N-IDFE-VARKVMFPLQHALKKLTEDIKICD-YVVSHNTDFDLSILGHYYTKLYGINPLS 358

Query: 120 PSRIIDTL--SIARRKHPSS-RNDLNSLCKRYG--ITISHRSKHGALLDSHLLSDVYIKM 174
               I T+  ++   K P+        L + Y        ++ H A +D       + K+
Sbjct: 359 RKATICTMKSTVNYCKIPNKFGYKFPKLSELYNKLFDYEVKNSHNAEIDVLHTLKCFKKL 418


>gi|307191510|gb|EFN75025.1| Three prime repair exonuclease 2 [Camponotus floridanus]
          Length = 324

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 49/143 (34%), Gaps = 15/143 (10%)

Query: 7   MRKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTN-------RTFQVFLCP--NGRKN 55
              I FD+ETTGL  +    RI EI  + +   S  N       R  Q  + P    +  
Sbjct: 4   QTFIFFDLETTGLIQEKLMPRITEIALIAVGRESICNSNKASLPRVLQKLILPINPQKII 63

Query: 56  SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNEQNAEWI--AHN-AKFDVGFINAELQ 111
            P    +  +  DE L  +     ++     F           AHN   F       EL+
Sbjct: 64  PPNVEYITKLFNDEMLLLQSFECEVYELIMRFLQRLTPPICFAAHNGKSFYYPIFFQELE 123

Query: 112 RINKDPLDPSRIIDTLSIARRKH 134
           R NK   D    IDT  + +   
Sbjct: 124 RTNKVLDDKILCIDTWKMFKDFF 146


>gi|38232887|ref|NP_938654.1| DNA polymerase III subunit epsilon [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38199145|emb|CAE48769.1| Putative helicase [Corynebacterium diphtheriae]
          Length = 373

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 68/187 (36%), Gaps = 30/187 (16%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K   +   ++ +G+     R++ I AV   +  +    F   L P    ++P    LHG+
Sbjct: 45  KAPYVALSVQASGIHPSTSRLVTIDAVTFTEQGEEVDHFFAVLNPE---SNPGPFHLHGL 101

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----------- 114
           + E +++   +S I        + +    + HNA+   GFI +E +R             
Sbjct: 102 SPEQIQEGKRYSQILKALDRLIDGR--TLLVHNAELVWGFIVSESKRAMSNAARANRSRS 159

Query: 115 ----------KDPLDPSRIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSK--HGAL 161
                          P  I+DTL+ ARR     +   + ++  + G+           A 
Sbjct: 160 RQRNRRRQRVGHIPKPVTIVDTLATARRLGLTFADIRIRNVATQLGLEAPDARASVARAQ 219

Query: 162 LD-SHLL 167
            D + L 
Sbjct: 220 ADTAQLT 226


>gi|241573853|ref|XP_002403219.1| three prime repair exonuclease, putative [Ixodes scapularis]
 gi|215500196|gb|EEC09690.1| three prime repair exonuclease, putative [Ixodes scapularis]
          Length = 192

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 66/184 (35%), Gaps = 29/184 (15%)

Query: 7   MRKIVFDIETTGLDSKNDR--IIEIG--AVELLDYSKTNR-TFQVF------LCPNGRKN 55
              + FD+ETT L     R  I E+   AV+   + K  + TF+V       + P     
Sbjct: 8   QTLVFFDLETTSLPRAGQRVGITELALVAVDRAHFEKQAKPTFRVLNKLTLCIRPEVYLE 67

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAK-FDVGFINAELQR 112
              A K  G+++  L ++  F         F     A    +AHN   FD   +    +R
Sbjct: 68  PMAAQKS-GMSEALLGNQRLFRDAVPSLRAFLASLPAPVCLLAHNGDYFDFPILRVSSRR 126

Query: 113 INKDP-LDPSRIIDTLSIAR-----------RKHPSSRNDLNSLCKRYGITISHRSKHGA 160
           +  D  L   +  DT+   R           +   +    L+ L KR+    S+   H A
Sbjct: 127 VQGDLGLPGLQCCDTIKALRQIVQAAPPPKKKVKGAGPYSLDMLYKRFCGRRSN--AHQA 184

Query: 161 LLDS 164
             D 
Sbjct: 185 EQDC 188


>gi|23501610|ref|NP_697737.1| exonuclease [Brucella suis 1330]
 gi|254704051|ref|ZP_05165879.1| exonuclease, putative [Brucella suis bv. 3 str. 686]
 gi|261754708|ref|ZP_05998417.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|23347526|gb|AAN29652.1| exonuclease, putative [Brucella suis 1330]
 gi|261744461|gb|EEY32387.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
          Length = 203

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 16/167 (9%)

Query: 26  IIEIGAVEL--LDYSKTNRTFQVFLCPNGR-----KNSPEALKLHGITDEFL-KDKPSFS 77
           I +IGAV++   +      TF+ ++ P+ R       +P    L GIT+E + +D     
Sbjct: 32  IAQIGAVKIGLENELPILETFKAYVTPHDRYGAHYAIAPYFTDLTGITEEQISRDGKPLK 91

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID-----TLSIARR 132
           +  ++   F     A + +     ++  I          P  P+   D      L+    
Sbjct: 92  TALNDLDSF--SDGATFWSWGKD-ELNMIAISCYVEGIAPPIPAPRFDNAVKLLLAAGMP 148

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               +R   N L   YG+       H AL D+  +      ++  G 
Sbjct: 149 VEDLARTPSNKLADYYGLEHPELQGHDALDDARSIGYTLQYLLSSGK 195


>gi|153000207|ref|YP_001365888.1| exonuclease I [Shewanella baltica OS185]
 gi|151364825|gb|ABS07825.1| Exodeoxyribonuclease I [Shewanella baltica OS185]
          Length = 472

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 57/179 (31%), Gaps = 27/179 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G +   DR  +   +   LD +        +         SPEA+ + GIT +  
Sbjct: 15  DYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGITPQLA 74

Query: 70  -LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------D 119
            LK  P  +         F++ N     +N+ +FD         R   DP          
Sbjct: 75  NLKGIP-ETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYVREWQNGNS 133

Query: 120 PSRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              IID +       P                L  L +  G  +SH   H A+ D +  
Sbjct: 134 RWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANG--LSHEKAHDAMSDVYAT 190


>gi|75812542|ref|YP_320161.1| DNA polymerase III, epsilon subunit [Anabaena variabilis ATCC
           29413]
 gi|75705298|gb|ABA24972.1| DNA polymerase III, epsilon subunit [Anabaena variabilis ATCC
           29413]
          Length = 237

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 55/166 (33%), Gaps = 10/166 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+ ++ D ET   +      I     ++ +YS    T    + P    N   A  ++ I+
Sbjct: 1   MKLLIIDTETAD-NENTPCEISATLYQVGEYSGAIATVSTLI-PVEVNN---AQAINRIS 55

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIID 125
            E  +          E     +      +A NA+FD    +     + +   L   R  D
Sbjct: 56  PELTQAAHPIYQRSLELLREISAIGDYAVAFNAEFDSQVADKFFPGMVSVPWLCAMRDFD 115

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               +   H      L  L    GI IS  + H A  D  LL +  
Sbjct: 116 WGYHSINSHGG--YKLTDLALWLGIGIS--TVHRAGDDVRLLVECL 157


>gi|126173926|ref|YP_001050075.1| exonuclease I [Shewanella baltica OS155]
 gi|125997131|gb|ABN61206.1| Exodeoxyribonuclease I subunit C [Shewanella baltica OS155]
          Length = 472

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 57/179 (31%), Gaps = 27/179 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G +   DR  +   +   LD +        +         SPEA+ + GIT +  
Sbjct: 15  DYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGITPQLA 74

Query: 70  -LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------D 119
            LK  P  +         F++ N     +N+ +FD         R   DP          
Sbjct: 75  NLKGIP-ETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNS 133

Query: 120 PSRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              IID +       P                L  L +  G  +SH   H A+ D +  
Sbjct: 134 RWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANG--LSHEKAHDAMSDVYAT 190


>gi|75812567|ref|YP_320186.1| exonuclease [Anabaena variabilis ATCC 29413]
 gi|75705323|gb|ABA24997.1| Exonuclease [Anabaena variabilis ATCC 29413]
          Length = 192

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 66/192 (34%), Gaps = 26/192 (13%)

Query: 1   MIRKNKMRK-IVFDIETT----GLDSKND-RIIEIGAVELLDY-SKTNRTFQVFLCPNGR 53
           M+  N+    +V D+E T    G   +++  IIEIGAV +     K    FQ F+ P   
Sbjct: 1   MLNLNQFDYFLVLDLEATCCDKGTIKRHEMEIIEIGAVMVEAQTLKILDEFQTFIKPIRH 60

Query: 54  KNSPEALKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
               E  KL   IT   +   P +    +    + ++           +D      + + 
Sbjct: 61  PILTEFCKLLTSITQTQVDHAPEYPEAIAMLKQWLSKYPNAVFGSWGDYDRNQFKQDSKF 120

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG---------ITISHRSKHGALLD 163
            N         I      ++    S+     L KRYG         I +     H  + D
Sbjct: 121 HNILFPIAYPHI----NLKQMFSESQ----DLPKRYGMAEALQLVNIELEG-IHHRGIDD 171

Query: 164 SHLLSDVYIKMM 175
           +  ++ +   ++
Sbjct: 172 AKNIAKLLPWIL 183


>gi|33152477|ref|NP_873830.1| exonuclease I [Haemophilus ducreyi 35000HP]
 gi|33148700|gb|AAP96219.1| exonuclease I [Haemophilus ducreyi 35000HP]
          Length = 513

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 65/202 (32%), Gaps = 27/202 (13%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKL 62
           N      +D E+ G++   DR  +   +    +++        +    N    S EA+ +
Sbjct: 3   NDFTFFFYDYESFGINPATDRPAQFAGIRTDREFNIIGEPVMFYCKQTNDYLPSAEAVMV 62

Query: 63  HGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP 120
            GI  +   +K  S           F++ N   I +N  ++D         R   DP + 
Sbjct: 63  TGIAPQLCNEKGLSEPEFAQRIHHEFSQPNTCIIGYNNIRYDDEMTRYTFFRNFYDPYEY 122

Query: 121 SRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGAL 161
                      +D +       PS               L  L K     I+H++ H A+
Sbjct: 123 CWKNGNSRWDLLDLVRACYALRPSGIEWPKNEKDEPSFKLEHLTKA--NAIAHQNAHDAM 180

Query: 162 LDSHLLSDVYIKMMVGGSQINF 183
            D +   ++    ++   Q   
Sbjct: 181 ADVYATIEI--AKLIKQKQRKL 200


>gi|256022685|ref|ZP_05436550.1| ribonuclease T [Escherichia sp. 4_1_40B]
          Length = 83

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 3  RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57
          R      +V D+ET G ++K D ++EI A+ L    +     + T    + P  G    P
Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72

Query: 58 EALKLHGITDE 68
          EAL  +GI   
Sbjct: 73 EALAFNGIDPN 83


>gi|297171091|gb|ADI22103.1| exonuclease I [uncultured Planctomycetales bacterium HF0200_11L05]
          Length = 468

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 25/194 (12%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSP 57
           M + N     I  D ETTGLD    +I+++G++   +     +   +F  L P     SP
Sbjct: 1   MTQLNADHCYIFTDTETTGLDINFSQILQVGSLLTDENLVVEKEHSLFSKLLPWIVP-SP 59

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFW-DFFNE---QNAEWIAHNA-KFDVGFINAELQR 112
           EA  +H  T+   +D P+   +  +   D+ N    +N  +I +N  +FD      +   
Sbjct: 60  EAFLVHKKTECLNEDSPTHYEMMCQLREDWLNWSINKNPVFITYNGHRFDEELFRRQFYW 119

Query: 113 INKDPLDPS----RIIDTLSIARRKHPSSRNDLNS-LCKRYGIT-----------ISHRS 156
               P   +      +D +   +       N L   + +  GI+           IS  +
Sbjct: 120 CLLPPYITNTGGATRLDLMYTFQLVANFFPNSLTVPMNEENGISLKLTDWAEANKISSIN 179

Query: 157 KHGALLDSHLLSDV 170
            H A+ D +L+ ++
Sbjct: 180 AHDAVADCYLMVNL 193


>gi|195154276|ref|XP_002018048.1| GL16972 [Drosophila persimilis]
 gi|198460377|ref|XP_002138824.1| GA25009 [Drosophila pseudoobscura pseudoobscura]
 gi|194113844|gb|EDW35887.1| GL16972 [Drosophila persimilis]
 gi|198136995|gb|EDY69382.1| GA25009 [Drosophila pseudoobscura pseudoobscura]
          Length = 221

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 10  IVFDIETTG------LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           I  D E T          +   IIE    +  L   K    F  ++ P    + S    +
Sbjct: 8   ISVDFEATCWEKQAPPQWRESEIIEFPAVLVNLKTGKVEAEFHTYVMPLESPRLSNYCTE 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAHN-AKFD 102
           L GI  + ++      +  + F ++   +                  N  ++      F 
Sbjct: 68  LTGIQQKTVEAGVPLQTALNLFCEWLRNELRVRNLVLPKTNKSNILGNCAFVTWTDWDFG 127

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           +       ++  + P   ++ ID  +I R  +     +         +    R  H  + 
Sbjct: 128 ICLAKECTRKRIRKPACFNQWIDARAIYREWYKYRPCNFADALSHVDLAFEGR-AHSGID 186

Query: 163 DSHLLSDVYIKMMVGGS 179
           D+  L  +  KM+  G+
Sbjct: 187 DAKNLGALICKMVRDGA 203


>gi|242001076|ref|XP_002435181.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215498511|gb|EEC08005.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 280

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 26  IIEIG--AVELLDYSKTNRTFQ--VFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFS 81
           I EI   AVE  ++ +  R      F          +A ++ G+ +E L+  P+F  +  
Sbjct: 8   ITEIALVAVERTNFREGLRYVHKLTFCVRPRHAIMEDACRITGLDNEQLEGCPTFEMVAP 67

Query: 82  EFWDFFN--EQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS 137
               F     Q    +A+N   FD   ++AELQR   +   P    D + + +    + 
Sbjct: 68  LVERFLQVLPQPVCLLAYNGNGFDFPLLHAELQRCGVN-FGPFLCCDAMPVIKELLRNP 125


>gi|330984124|gb|EGH82227.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 206

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 82/206 (39%), Gaps = 27/206 (13%)

Query: 2   IRKNKM-RKIV-FDIETT-------GL-DSKNDRIIEIG-AVELLDYSKTNRTFQVFLCP 50
           IRK+ + R ++  D+E T       G  D     +IEIG A   ++  +   T  V + P
Sbjct: 8   IRKHTLKRYLIGIDLECTCWPAEMVGAPDRMEREVIEIGLAAIDMEKLEIVGTHSVLIKP 67

Query: 51  NGRKN-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFIN 107
                 S     L  IT+E L+  P F     +   + ++  ++  W +    FD+  + 
Sbjct: 68  EHHPVLSEFCTSLTTITNEMLECAPLFPEGLDQAMGWLSKFNEDYAWCSW-GMFDLHHLQ 126

Query: 108 AELQRINKD------PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            E  R   +          ++ + + S  R K    ++ L+      G+ ++  + H  +
Sbjct: 127 HESHRKGVELGLRSTLHFNAKTLYSQSHPRLKRRGMKSALD----HEGVKLAG-THHRGV 181

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKT 187
            D+  ++ + I    G  Q + G K+
Sbjct: 182 DDATNMARLIIH-EQGARQASRGAKS 206


>gi|145234300|ref|XP_001400521.1| RNA exonuclease 4 [Aspergillus niger CBS 513.88]
 gi|134057466|emb|CAK37974.1| unnamed protein product [Aspergillus niger]
          Length = 309

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 55/167 (32%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G+    D    +  V +++++   + +  ++ P           + GI  
Sbjct: 113 KYVAMDCEMVGVGPNPDHDSALARVSIVNFNG-EQIYDSYVRPKEMVTDWR-THVSGILP 170

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +  +   +  +  +  + +    + H    D+  +      +   P    R     
Sbjct: 171 KHMVEARTLEQVQKDVINILDGR--ILVGHAVSNDLDAL------LLSHPKRDIRDTSKH 222

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I     H ++ D+     +Y +
Sbjct: 223 PPYRKIAGGGSPRLKMLASEFLGLEI-QDGAHSSVEDARATMLLYRR 268


>gi|307169180|gb|EFN61996.1| Prion protein-interacting protein [Camponotus floridanus]
          Length = 236

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 28/176 (15%)

Query: 10  IVFDIETTG-----LDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRK-NSPEALKL 62
           +V D E T      L  +   IIE+  V       K   TF  ++ P      +P  ++L
Sbjct: 28  LVMDFEATCDKQVTLQPQ--EIIELPCVALSTSDWKLKDTFHAYIRPRVYPKLTPFCIEL 85

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI  E + D+P F+ +FS+F  +  E       +  + D            K  L    
Sbjct: 86  TGIMQEMVDDQPCFADVFSKFRKWLIEGG-----YFDRSDKSSFVTCGNWDLKTMLPNQC 140

Query: 123 IID--TLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSH 165
            +D  TL    ++    ++            L  +  R  +++  R  H  + D  
Sbjct: 141 NLDNITLPDEFKQWIELKHTFCDSTGYYPRSLKDMLTRLDLSMQGR-LHSGIDDVK 195


>gi|299065319|emb|CBJ36488.1| exodeoxyribonuclease I [Ralstonia solanacearum CMR15]
          Length = 477

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 51/178 (28%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G   + DR  +   +    + ++     ++F  P N     P +  + GIT +  
Sbjct: 9   DYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCRPSNDWLPDPVSCLITGITPQQC 68

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           LK                       + +N+ +FD         R   DP           
Sbjct: 69  LKTGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREWQNTCGR 128

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L +  G+   H + H AL D    
Sbjct: 129 WDLLDVVRTTWALRPDGVEWPKNDDGKPSFKLEHLSQANGLQ--HEAAHDALSDVRAT 184


>gi|289626405|ref|ZP_06459359.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289649559|ref|ZP_06480902.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298486356|ref|ZP_07004418.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298159084|gb|EFI00143.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330866329|gb|EGH01038.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330889890|gb|EGH22551.1| exonuclease [Pseudomonas syringae pv. mori str. 301020]
          Length = 180

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 65/172 (37%), Gaps = 10/172 (5%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E T    G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPVLTHFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINKD-PLDP 120
            I    +      ++++ +F  + +   A  +   +   +D   +  E +    D  L  
Sbjct: 64  HINQSSIDSAAPLTAVWPQFERWLSHHRARVLGWASWGDYDRQQLEEEWRYHRLDSALSS 123

Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              ++     A+ +       LNS  +  G+  + +  H AL+D+   + + 
Sbjct: 124 MPHVNLKQRFAQARQLQKPMGLNSALQLAGMQFTGQQ-HRALVDARNTARLL 174


>gi|224070575|ref|XP_002192871.1| PREDICTED: similar to Exonuclease domain-containing protein 1
           [Taeniopygia guttata]
          Length = 661

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 49/164 (29%), Gaps = 24/164 (14%)

Query: 38  SKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFF--------- 87
                 F +++ P      S    +L GIT   +      +   S+F  +          
Sbjct: 42  GAIESEFHMYVQPQEHPILSEFCTELTGITQNQVDQGVPLNICLSQFLKWVQKLQKEKKI 101

Query: 88  ------------NEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSIARRKH 134
                         +   ++          ++ E +R   + P   +  ID  +  R  +
Sbjct: 102 TFSTDSQSNSTSEAKACAFVTWTDWDLGVCLHYECKRKQLRKPDILNSWIDLKATYRAFY 161

Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                 LN   +  GI    R  H  L DS   + +  +++  G
Sbjct: 162 NRKPKGLNGALQDLGIAFEGRE-HSGLDDSRNTARLAWRLICDG 204


>gi|119469387|ref|ZP_01612326.1| exonuclease I [Alteromonadales bacterium TW-7]
 gi|119447251|gb|EAW28520.1| exonuclease I [Alteromonadales bacterium TW-7]
          Length = 481

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 27/194 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G   + D+  +   +   LD +        +  P       PEA  + GIT +  
Sbjct: 15  DYETWGASPQKDKPSQFAGIRTDLDLNIIGEPLIEYCKPQADYLPHPEACLITGITPQVA 74

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGF---INAELQRINKDPLDP 120
           +K     +   ++    F+  N     +N+ +FD       F        +R  K+    
Sbjct: 75  MKKGLVEAEFIAKIHAEFSAPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYKNNNSR 134

Query: 121 SRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             IID +       P                L  L    GI   H + H AL D  + + 
Sbjct: 135 WDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIE--HAAAHDALSD--VTAT 190

Query: 170 VYIKMMVGGSQINF 183
           + +  ++   Q   
Sbjct: 191 IALAKLIKEKQPKL 204


>gi|271500784|ref|YP_003333809.1| exodeoxyribonuclease I [Dickeya dadantii Ech586]
 gi|270344339|gb|ACZ77104.1| Exodeoxyribonuclease I [Dickeya dadantii Ech586]
          Length = 476

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 29/195 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFL 70
           D ET G     DR  +   V   L+++       ++  P +     PEA+ + GIT + +
Sbjct: 14  DYETFGKHPAKDRPAQFAGVRTDLNFTVIGEPVVIYCQPADDYLPDPEAVMITGITPQ-V 72

Query: 71  KDK--PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI---- 123
             K     +   +   + F+      + +N  +FD         R   DP   S      
Sbjct: 73  AQKRGVREAEFANHIHEAFSVPGTCIMGYNNIRFDDEVSRNLFYRNFFDPYAYSWQQGNS 132

Query: 124 ----IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
               +D L       P                L  L +  G+   H   H A+ D +   
Sbjct: 133 RWDLLDMLRACYALRPDGIVWPENDDGFPSFKLEHLTRANGVE--HTQAHDAMSDVYAT- 189

Query: 169 DVYIKMMVGGSQINF 183
            + +  ++  +Q   
Sbjct: 190 -IAMARLLKQAQPKL 203


>gi|255324960|ref|ZP_05366068.1| conserved hypothetical protein [Corynebacterium
          tuberculostearicum SK141]
 gi|255298020|gb|EET77329.1| conserved hypothetical protein [Corynebacterium
          tuberculostearicum SK141]
          Length = 98

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN------GRKNSPEALKL 62
           +V D ETTG + + DRIIE+ AV    Y     ++   L P+       R   P    L
Sbjct: 31 FVVIDTETTGFNKRYDRIIELAAVRADAYFNPVDSWHTLLTPDTNAVSATRGTPPPTSAL 90

Query: 63 H 63
          H
Sbjct: 91 H 91


>gi|294669159|ref|ZP_06734240.1| oligoribonuclease [Neisseria elongata subsp. glycolytica ATCC
           29315]
 gi|291308903|gb|EFE50146.1| oligoribonuclease [Neisseria elongata subsp. glycolytica ATCC
           29315]
          Length = 185

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK----NSP 57
           + +N       D+E TGLD + +RIIE+  +            +V++     +       
Sbjct: 1   MTQNASNLCWLDMEMTGLDPERERIIEVAMIITDSDLNVLAQSEVYVVHQSDELLDGMDA 60

Query: 58  EALKLHGIT--DEFLKD-KPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAEL 110
                HG T   + +++ + + + +  +  DF      E++     ++   D  F+   +
Sbjct: 61  WNTATHGRTGLTQRVRESQLTEAEVEQKLLDFIAQWIPEKSTPMCGNSIHQDRRFMVKYM 120

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R+       +  + TL  +A+R HP       ++ K     +  R  H AL D
Sbjct: 121 PRLEAYFHYRNLDVSTLKELAKRWHP-------AVAK----GVVKRGSHQALDD 163


>gi|321476304|gb|EFX87265.1| hypothetical protein DAPPUDRAFT_312568 [Daphnia pulex]
          Length = 219

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 28/183 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELL----------DYSKTNRTFQVFLCPNGRKNSPEA 59
           + FD+ETTG   K+  I E+    +           ++ +      + + P+ ++  P+A
Sbjct: 12  VFFDLETTGF--KDPEITELSFCSIDRSQFLNCQRGEFPRITNRLNLCIKPS-KQIEPKA 68

Query: 60  LKLHGITDEFLKDKPSFSS-IFSEFWDFFN--EQNAEWIAHN-AKFDVGFINAELQRINK 115
            ++  + +  L  +  F   + +    F N  ++    +AHN  KFD   + AE  R+  
Sbjct: 69  SEITKLDNCNLDHQSPFDEDVGNIVLSFLNRLKKPVCLVAHNGFKFDFPILLAEFSRLYG 128

Query: 116 DPLDPSRII--DTLSIARRK--HPSSRN----DLNSLCK--RYGI-TISHRSKHGALLDS 164
               PS I   D+L+I R     PSS N     L+   K   Y I       +H A  D 
Sbjct: 129 IMDFPSDIFSVDSLAIFRNLSQSPSSPNLKNIRLSFALKNVYYRIYGRDPEERHEAEADV 188

Query: 165 HLL 167
            +L
Sbjct: 189 KVL 191


>gi|162452505|ref|YP_001614872.1| putative exonuclease [Sorangium cellulosum 'So ce 56']
 gi|161163087|emb|CAN94392.1| putative exonuclease [Sorangium cellulosum 'So ce 56']
          Length = 184

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 9/164 (5%)

Query: 9   KIVFDIETTGLDS-----KNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +V D+E T  D      + + IIEIG     +   +      + + P   + SP    L
Sbjct: 8   ILVIDVEATCWDGDPPPGEENEIIEIGVCPLEVASCRRRERRSILVRPERSRVSPFCTAL 67

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +T   +    SF    +        Q+    A    +D      + Q           
Sbjct: 68  TTLTQADVDAGVSFREACATLRSELKAQD-RLWASYGDYDRRMFERQCQSRGVPLPFGPS 126

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSH 165
            ++  S+    H  SR   +    +R G+ ++  + H  + D+H
Sbjct: 127 HLNVKSLFAVTHALSREVGMAEALERAGLPLAG-THHRGVDDAH 169


>gi|307261134|ref|ZP_07542811.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306869164|gb|EFN00964.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 514

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 75/222 (33%), Gaps = 28/222 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEA 59
           + KN +    +D E+ G+    DR  +   +    D++        +         SPEA
Sbjct: 1   MNKN-LTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEA 59

Query: 60  LKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQR 112
           + +  IT +    +        +     F++ N   + +N  ++D       F       
Sbjct: 60  VMVTDITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDP 119

Query: 113 INKDPLDPSRIIDTLSIARRKH---PSS-----------RNDLNSLCKRYGITISHRSKH 158
                 + +   D L + R  +   P                L +L K  GI  +H + H
Sbjct: 120 YEYSWKNGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGI--AHENAH 177

Query: 159 GALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200
            A+ D +    + +  ++   Q        E+R  KE +K +
Sbjct: 178 DAMADVYAT--IAMAKLIKQKQPKLFQFFFENRGKKEIEKMI 217


>gi|254453670|ref|ZP_05067107.1| exodeoxyribonuclease I, putative [Octadecabacter antarcticus 238]
 gi|198268076|gb|EDY92346.1| exodeoxyribonuclease I, putative [Octadecabacter antarcticus 238]
          Length = 459

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 28/189 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNR-TFQVFLCPNGRKNSPEALKLHG 64
           M    +D+E TGL    D+ ++  A+   D + +  R   +  + P+    SP AL + G
Sbjct: 1   MTFAFYDLEITGLSPAFDQPLQFAAILTDDEFREVERVNLRCRIAPHIIP-SPWALAVTG 59

Query: 65  ITDEFLKDK--PSFSSIFSEFWDFFNEQN-AEWIAHNA-KFDVGFINAELQR-----INK 115
           +    L D   P+      E     +  + A W   N+ +FD   +     +     +  
Sbjct: 60  VRPAQLLDAGLPTLFEFTQEIGALIDRWSPAIWTGFNSIRFDEEVLRQAFYQNLSPNVYA 119

Query: 116 DPLDPSRIIDTL---SIARRKHPS---------SRND--LNSLCKRYGITISHRSKHGAL 161
              + +   D L     A  + P           R    L+ L    G   +  + H AL
Sbjct: 120 TQFNGNTRFDILPAVYAAYVREPDLLVWPEDDTGRRSLKLDRLAPANG--FNAHNAHDAL 177

Query: 162 LDSHLLSDV 170
            D      +
Sbjct: 178 GDVEATVHI 186


>gi|71280482|ref|YP_268744.1| exonuclease I [Colwellia psychrerythraea 34H]
 gi|71146222|gb|AAZ26695.1| exodeoxyribonuclease I [Colwellia psychrerythraea 34H]
          Length = 487

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 58/181 (32%), Gaps = 28/181 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G++ K D+  +   +   LD +        +  P       PEA  + GIT +  
Sbjct: 19  DYETWGINPKFDKPSQFAGIRTDLDLNIIGEPEMFYCTPPVDYLPHPEACLVTGITPQKA 78

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------DP 120
            ++  S +   +     F + N     +N+ +FD       L R   DP           
Sbjct: 79  QREGLSEAEFAARIHTLFTQPNTCVAGYNSIRFDDEVTRYLLYRNFYDPYAREWQNGNSR 138

Query: 121 SRIIDTLSIARRKHPSS--------------RNDLNSLCKRYGITISHRSKHGALLDSHL 166
             IID +       P                   L  L       ISH + H A+ D + 
Sbjct: 139 WDIIDMVRACYALRPEGINWPTVKRDGEEVISFRLELLTAA--NDISHEAAHDAMSDVYA 196

Query: 167 L 167
            
Sbjct: 197 T 197


>gi|309780540|ref|ZP_07675287.1| exodeoxyribonuclease I [Ralstonia sp. 5_7_47FAA]
 gi|308920695|gb|EFP66345.1| exodeoxyribonuclease I [Ralstonia sp. 5_7_47FAA]
          Length = 479

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 61/220 (27%), Gaps = 30/220 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G   + DR  +   +    + ++     ++F  P N     P +  + GIT +  
Sbjct: 11  DYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLITGITPQQC 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +                       + +N  +FD         R   DP           
Sbjct: 71  ARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYAREWQNECGR 130

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              +D +       P                L  L K  G+   H + H A+ D      
Sbjct: 131 WDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLV--HEAAHDAVSDVRAT-I 187

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
              +++       F F        +++ + V  I    R 
Sbjct: 188 ALARLIRNAQPRLFDF----CLALRKKDRVVAEIGDAPRP 223


>gi|72387357|ref|XP_844103.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62360611|gb|AAX81022.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70800635|gb|AAZ10544.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 452

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 84/215 (39%), Gaps = 19/215 (8%)

Query: 10  IVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTN--RTFQVFLCPNGRKN-SPEALKL 62
           IV D+E T     D+    IIE+ G +  +     +  R+F+ ++ P      +P    L
Sbjct: 145 IVVDVEATCEYKNDNYPHEIIELPGVLVDVRRGVVDKERSFRSYVRPQRNPLLTPFCKAL 204

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEW-IAHNAKFDV-GFINAE--LQRINK 115
            GIT E +   P+   +   F  ++ E   + A+  +A +  +D+  F++    L+    
Sbjct: 205 TGITQEDVDSAPTLQEVVKLFEQWYTETIPRGAKVALATDGPWDLKNFVHEHSILRDHIS 264

Query: 116 DPLDPSRIIDTLSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            P      +D  +         +   L  + +R  +T   R  H    D+  ++ + + M
Sbjct: 265 FPTIFYEYLDIRTTFAHFFNRGTPLKLVPMLERLQLTFEGRE-HCGFDDAVNIARLAVSM 323

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
           M  G   N+           E    +PN +L +R 
Sbjct: 324 MRAGCVFNYLVAIP---LTDEFHYDMPNTALYRRK 355


>gi|255307423|ref|ZP_05351594.1| putative exonuclease [Clostridium difficile ATCC 43255]
          Length = 342

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 18/176 (10%)

Query: 7   MRKIVFDIETTGLDSKNDR------IIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEA 59
           M+++  D E    +SK+ R      II IGAV   + +K    F+  + P +  +  P  
Sbjct: 1   MKRVYIDFEMNMPNSKSKRAVFNSDIIAIGAVMYDEKTKNIDKFKSLIRPVSNEELYPHI 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI---NK 115
            +L  I+ E LK  PS+  +  +F  +    +     +     D+   N    R    N 
Sbjct: 61  QELTHISSEELKSAPSYEEVMRKFKKWLGIFSDIKGIYTFGNLDLTCFNNTDMRSAKKNN 120

Query: 116 DPLDPSRIIDTLSIARRKHP------SSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            P   + I D     + K+        +   L +L +   +  S    H  L D++
Sbjct: 121 HPRFVNNIRDLFVDIKEKYINCGMRCMNYISLKNLLEFVNLEFSG-DAHDPLNDAY 175


>gi|71736737|ref|YP_274026.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557290|gb|AAZ36501.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320323478|gb|EFW79563.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329479|gb|EFW85471.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 180

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 68/177 (38%), Gaps = 10/177 (5%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E T    G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPVLTHFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINKD-PLDP 120
            I    +      ++++ +F  + +   A  +   +   +D   +  E +    D  L  
Sbjct: 64  HINQSSIDSAAPLTTVWPQFERWLSHHRARVLGWASWGDYDRQQLEEEWRYHRLDSALSS 123

Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
              ++     A+ +       LNS  +  G+  + +  H AL+D+   + +   +++
Sbjct: 124 MPHVNLKQRFAQARQLQKPMGLNSALQLAGMQFAGQQ-HRALVDARNTARLLPLILL 179


>gi|257464641|ref|ZP_05629012.1| exonuclease I [Actinobacillus minor 202]
 gi|257450301|gb|EEV24344.1| exonuclease I [Actinobacillus minor 202]
          Length = 514

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 62/184 (33%), Gaps = 25/184 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +    +D E+ G++   DR  +   +   + ++        +    +    SPEA+ + G
Sbjct: 5   LTFFFYDYESFGVNPAIDRPAQFAGIRTDEQFNIIGEPVMFYCKQTSDYLPSPEAVMVTG 64

Query: 65  ITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDP 117
           I  +    +  S     +     F++ N   I +N  ++D       F            
Sbjct: 65  ILPQQCNAEGLSEPEFAARIHAEFSQPNTCVIGYNNIRYDDEMTRYTFFRNFFDPYEYSW 124

Query: 118 LDPSRIIDTLSIARRKH---PSS-----------RNDLNSLCKRYGITISHRSKHGALLD 163
            + +   D L + R  +   P                L +L K  GI  SH + H A+ D
Sbjct: 125 KNGNSRWDLLDVVRACYALRPEGIEWVTDEEGIPNFKLENLTKANGI--SHENAHDAMSD 182

Query: 164 SHLL 167
            +  
Sbjct: 183 VYAT 186


>gi|239793055|dbj|BAH72791.1| ACYPI010006 [Acyrthosiphon pisum]
          Length = 340

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 82/243 (33%), Gaps = 38/243 (15%)

Query: 9   KIVFDIETTGLDSKND----RIIEIGAVELL-DYSKTNRTFQVFLCPNGRK-NSPEALKL 62
            +V DIE T  ++        IIE  AV +     K    FQ F+ P+     S   +KL
Sbjct: 95  FVVIDIEATCTENNPADYKFEIIEFPAVLVDAKKRKIIDHFQAFVKPSINPKLSEFCIKL 154

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD----VGFINAELQRINKDPL 118
            GIT + + +  SF    + F  +  E     I H         + ++     +     +
Sbjct: 155 TGITQDQIDNADSFEVCLTRFTKWLEEHEL-GIKHKFSIVTDGPLIWLRFLYGQCLMSEI 213

Query: 119 DPSRIIDTLSIARRKHP----------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
              +        R+             S   +LN++     +     + H  L DS  +S
Sbjct: 214 PYPKFATKWINIRKVFKAFYFTKQVKYSVPCNLNAMLTFLDMEFEG-NPHSGLDDSFNIS 272

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
            + I+++  G+ I+            E   ++   +   +D PL  R        H+   
Sbjct: 273 RICIRLLEDGAFID----------QNERIISLKTPTPYGKDDPLPVRPV------HNIFC 316

Query: 229 QTL 231
             +
Sbjct: 317 DGM 319


>gi|322500703|emb|CBZ35780.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 880

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 20/185 (10%)

Query: 10  IVFDIETTGLDSKND-------RIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEAL 60
           +V D E T    +          IIE   V +     +    F  F+ P   R+ SP   
Sbjct: 633 LVLDFEAT---CEEHPPPNYLYEIIEFPVVVVDARLQRVVAEFHRFVRPRYKRELSPFCQ 689

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAE-LQRIN 114
           KL G+  E +    S   +  +F  + +          ++         F+    + R  
Sbjct: 690 KLTGMRQEDVDTAASLEEVIRQFERWLSHTLPPHARCMFVTDGPMDLREFMYYHSVSRQG 749

Query: 115 KD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              P    + ID           S+  + ++ +   +    R  H  L D+  ++ + I 
Sbjct: 750 IRFPSLFYQFIDVKQTFACFFRCSQGKIKAMLEVLHLPFEGR-LHSGLDDARNIASIVIG 808

Query: 174 MMVGG 178
           ++  G
Sbjct: 809 LLHYG 813


>gi|291233033|ref|XP_002736458.1| PREDICTED: Eri3 protein-like [Saccoglossus kowalevskii]
          Length = 216

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 61/183 (33%), Gaps = 21/183 (11%)

Query: 9   KIVFDIETTG---LDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D E T           IIEI  +++   + +T   F  ++ P      +P   +L 
Sbjct: 23  FLVLDFEATCEKSTKIYPQEIIEIPVLKIHAKTFETEAIFHTYVQPTANPILTPFCTELT 82

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNA-------EWIAHNAKFDVGFINAELQRINKD 116
           GIT + +  KP           +  +Q          ++      D         +    
Sbjct: 83  GITQDVVCGKPKIEEALKMLDKWMLDQGLLDGETAFVFV---TCGDWDLKTMLPGQCKYF 139

Query: 117 PLDPSRIIDTLSIARRKH-----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            L  +    +    +R       P+ R DL  + +   +   H   H  + D+  ++++ 
Sbjct: 140 RLPIANYFKSWINIKRPFSEVVRPNIRVDLMEMLQMLDLE-HHGRHHSGIDDTKNIANIL 198

Query: 172 IKM 174
            ++
Sbjct: 199 QEL 201


>gi|146092929|ref|XP_001466576.1| hypothetical protein [Leishmania infantum]
 gi|134070939|emb|CAM69615.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 880

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 20/185 (10%)

Query: 10  IVFDIETTGLDSKND-------RIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEAL 60
           +V D E T    +          IIE   V +     +    F  F+ P   R+ SP   
Sbjct: 633 LVLDFEAT---CEEHPPPNYLYEIIEFPVVVVDARLQRVVAEFHRFVRPRYKRELSPFCQ 689

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAE-LQRIN 114
           KL G+  E +    S   +  +F  + +          ++         F+    + R  
Sbjct: 690 KLTGMRQEDVDTAASLEEVIRQFERWLSHTLPPHARCMFVTDGPMDLREFMYYHSVSRQG 749

Query: 115 KD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              P    + ID           S+  + ++ +   +    R  H  L D+  ++ + I 
Sbjct: 750 IRFPSLFYQFIDVKQTFACFFRCSQGKIKAMLEVLHLPFEGR-LHSGLDDARNIASIVIG 808

Query: 174 MMVGG 178
           ++  G
Sbjct: 809 LLHYG 813


>gi|257484494|ref|ZP_05638535.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|330986187|gb|EGH84290.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331013242|gb|EGH93298.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 180

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 65/172 (37%), Gaps = 10/172 (5%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E T    G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPVLTHFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINKD-PLDP 120
            I    +      ++++ +F  + +   A  +   +   +D   +  E +    D  L  
Sbjct: 64  HINQSSIDSAAPLTTVWPQFERWLSHHRARVLGWASWGDYDRQQLEEEWRYHRLDSALSS 123

Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              ++     A+ +       LNS  +  G+  + +  H AL+D+   + + 
Sbjct: 124 MPHVNLKQRFAQARQLQKPMGLNSALQLAGMQFTGQQ-HRALVDARNTARLL 174


>gi|24374325|ref|NP_718368.1| exonuclease I [Shewanella oneidensis MR-1]
 gi|24348874|gb|AAN55812.1|AE015718_4 exodeoxyribonuclease I [Shewanella oneidensis MR-1]
          Length = 470

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 57/179 (31%), Gaps = 27/179 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK--NSPEALKLHGITDEF- 69
           D ET G +   DR  +   +            + F C        SPEA+ + GIT +  
Sbjct: 13  DYETFGANPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITGITPQLA 72

Query: 70  -LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------D 119
            LK  P  +         F++ N     +N+ +FD         R   DP          
Sbjct: 73  NLKGLP-ETEFMGRIHTLFSQANTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNT 131

Query: 120 PSRIIDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLL 167
              IID +       P   +            L  L +  G  +SH   H A+ D +  
Sbjct: 132 RWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANG--LSHEKAHDAMSDVYAT 188


>gi|254975986|ref|ZP_05272458.1| putative exonuclease [Clostridium difficile QCD-66c26]
 gi|255093374|ref|ZP_05322852.1| putative exonuclease [Clostridium difficile CIP 107932]
 gi|255315119|ref|ZP_05356702.1| putative exonuclease [Clostridium difficile QCD-76w55]
 gi|255517789|ref|ZP_05385465.1| putative exonuclease [Clostridium difficile QCD-97b34]
 gi|255650904|ref|ZP_05397806.1| putative exonuclease [Clostridium difficile QCD-37x79]
          Length = 342

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 18/176 (10%)

Query: 7   MRKIVFDIETTGLDSKNDR------IIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEA 59
           M+++  D E    +SK+ R      II IGAV   + +K    F+  + P +  +  P  
Sbjct: 1   MKRVYIDFEMNMPNSKSKRAVFNSDIIAIGAVMYDEKTKNIDKFKSLIRPVSNEELYPHI 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI---NK 115
            +L  I+ E LK  PS+  +  +F  +    +     +     D+   N    R    N 
Sbjct: 61  QELTHISSEELKSAPSYEEVMRKFKKWLGIFSDIKGIYTFGNLDLTCFNNTDMRSAKKNN 120

Query: 116 DPLDPSRIIDTLSIARRKHP------SSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            P   + I D     + K+        +   L +L +   +  S    H  L D++
Sbjct: 121 HPRFVNNIRDLFVDIKEKYINCGMRCMNYISLKNLLEFVNLEFSG-DAHDPLNDAY 175


>gi|227015888|gb|ACP17985.1| putative exonuclease RNase T and DNA polymerase III [Pseudomonas
           nitroreducens]
          Length = 182

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 74/181 (40%), Gaps = 19/181 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++  K   +  DIE +G       ++ IGA    D   T + F  +L P   +  P A++
Sbjct: 1   MKAEKEIFVSVDIEASGPIPGKYSMLSIGACVTSD---TAQRFTCYLKPISDEFVPAAME 57

Query: 62  LHGITDEFLKDKP-SFSSIFSEF---WDFFNEQNA--EWIAHNAKFDVGFINAELQRINK 115
           + G++   L+++  S      +F    D    + A   ++  NA FD  F+N        
Sbjct: 58  VTGLSLNKLREEGLSPIKAMKQFKVWVDSLAGEGASVIFVGFNASFDWAFVNYYFHEFIG 117

Query: 116 DPLDPSRIIDTLSI----ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +       +D  S+    A     S+R+  ++ +     +  S +  H AL D+   +++
Sbjct: 118 ENPFGIAALDIKSMYFGVAGSTWKSTRSSDIDKV-----LNPSSKGDHDALHDAVYQAEL 172

Query: 171 Y 171
           +
Sbjct: 173 F 173


>gi|329298840|ref|ZP_08256176.1| exonuclease I [Plautia stali symbiont]
          Length = 473

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 58/190 (30%), Gaps = 27/190 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEA 59
           +  ++   +  D ET G     DR  +   +            QVF C   +     PEA
Sbjct: 1   MPASEFTFLFHDYETFGKSPSLDRPAQFAGLRTDKAFNAVGEPQVFYCQLADDYLPQPEA 60

Query: 60  LKLHGITDEFLKDKPSFSSI--FSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           + + GIT + + +      +         F+E     I +N  +FD         R   D
Sbjct: 61  VMITGITPQ-VANARGVQEVEFAQRIHALFSEPQTCVIGYNNVRFDDEVTRNIFYRNFID 119

Query: 117 PLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSK 157
           P   S          +D +       P                L  L +  G+  +H   
Sbjct: 120 PYGWSWQNGNSRWDLLDVMRACYALRPEGIVWPENDDGFPSFKLEHLTQANGV--AHEQA 177

Query: 158 HGALLDSHLL 167
           H A+ D +  
Sbjct: 178 HDAMSDVYAT 187


>gi|255101554|ref|ZP_05330531.1| putative exonuclease [Clostridium difficile QCD-63q42]
 gi|328887708|emb|CAJ69282.2| putative exonuclease [Clostridium difficile]
          Length = 342

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 18/176 (10%)

Query: 7   MRKIVFDIETTGLDSKNDR------IIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEA 59
           M+++  D E    +SK+ R      II IGAV   + +K    F+  + P +  +  P  
Sbjct: 1   MKRVYIDFEMNMPNSKSKRAVFNSDIIAIGAVMYDEKTKNIDKFKSLIRPVSNEELYPHI 60

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI---NK 115
            +L  I+ E LK  PS+  +  +F  +    +     +     D+   N    R    N 
Sbjct: 61  QELTHISSEELKSAPSYEEVMRKFKKWLGIFSDIKGIYTFGNLDLTCFNNTDMRSAKKNN 120

Query: 116 DPLDPSRIIDTLSIARRKHP------SSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            P   + I D     + K+        +   L +L +   +  S    H  L D++
Sbjct: 121 HPRFVNNIRDLFVDIKEKYINCGMRCMNYISLKNLLEFVNLEFSG-DAHDPLNDAY 175


>gi|187930471|ref|YP_001900958.1| exonuclease I [Ralstonia pickettii 12J]
 gi|187727361|gb|ACD28526.1| Exodeoxyribonuclease I [Ralstonia pickettii 12J]
          Length = 479

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 61/220 (27%), Gaps = 30/220 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G   + DR  +   +    + ++     ++F  P N     P +  + GIT +  
Sbjct: 11  DYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLITGITPQQC 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +                       + +N  +FD         R   DP           
Sbjct: 71  ARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYAREWQNECGR 130

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              +D +       P                L  L K  G+   H + H A+ D      
Sbjct: 131 WDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLV--HEAAHDAVSDVRAT-I 187

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
              +++       F F        +++ + V  I    R 
Sbjct: 188 ALARLIRNAQPRLFDF----CLALRKKDRVVAEIGDAPRP 223


>gi|281337568|gb|EFB13152.1| hypothetical protein PANDA_015995 [Ailuropoda melanoleuca]
          Length = 365

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 135 MVPFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 194

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
             +P   +L GI    +  +PS   +     ++  ++ 
Sbjct: 195 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEG 232


>gi|109475366|ref|XP_233435.4| PREDICTED: exoribonuclease 3 [Rattus norvegicus]
          Length = 406

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 288 MVPFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 347

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
             +P   +L GI    +  +PS   +     ++  ++ 
Sbjct: 348 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEG 385


>gi|73977195|ref|XP_862437.1| PREDICTED: similar to prion protein interacting protein 1 isoform 3
           [Canis familiaris]
          Length = 208

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 57  MVPFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 116

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
             +P   +L GI    +  +PS   +     ++  ++ 
Sbjct: 117 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEG 154


>gi|27377408|ref|NP_768937.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27350552|dbj|BAC47562.1| polymerase epsilon subunit [Bradyrhizobium japonicum USDA 110]
          Length = 201

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 39/113 (34%), Gaps = 13/113 (11%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPL 118
             L GITDE +       +  + F +      A  + AHN+ FD  F     +R      
Sbjct: 2   TALTGITDEMVTGHRFHDAAITAFVE-----GAVIVIAHNSGFDRKF----AERYWPLFE 52

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             +       I  RKH  +   L  L    G        H A+ D H L +V 
Sbjct: 53  HKAWGCSMSEIDWRKHGFAGAQLGYLLNGAGFF---HQAHRAVDDCHALLEVL 102


>gi|120603536|ref|YP_967936.1| exonuclease, RNase T and DNA polymerase III [Desulfovibrio vulgaris
           DP4]
 gi|120563765|gb|ABM29509.1| Exonuclease, RNase T and DNA polymerase III [Desulfovibrio vulgaris
           DP4]
          Length = 251

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 9/132 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67
            +V D+E TGL  + D II +  V +        R F+  + P+      +A+ +HG+  
Sbjct: 48  FVVLDLEMTGLVPRRDAIIAVAGVTMRGERILAGRCFEAKMRPH-LPPEEDAIAVHGLLP 106

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +        +   + F  F  E  A     +   D  F++A  QR    P  P R +D  
Sbjct: 107 DETATHDDPAESLAAFRTFCGE--AVPTGWHVGLDAAFLDAAAQRHGVRPW-PRRTLDV- 162

Query: 128 SIARRKHPSSRN 139
              R  H + R+
Sbjct: 163 ---RGLHLALRH 171


>gi|256080351|ref|XP_002576445.1| 3'-5' exonuclease [Schistosoma mansoni]
 gi|238661713|emb|CAZ32682.1| 3'-5' exonuclease eri1-related [Schistosoma mansoni]
          Length = 232

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 68/199 (34%), Gaps = 29/199 (14%)

Query: 4   KNKMR-KIVFDIETTGLD---SKNDRIIEIGAVELLDYSKT-NRTFQVFLCP-NGRKNSP 57
            N +R   + D E+T  +    K   IIE   V L   + T   +FQ F+ P    + S 
Sbjct: 26  TNNLRWFFILDFESTCFEDDIKKPAEIIEFPVVILDSVTGTLIDSFQSFVKPTENPELSV 85

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ-------------NAEWIAHNAKFDVG 104
               L GI    +++ P+ + +  +F  +  +              +A ++     +D+ 
Sbjct: 86  FCSNLTGIQQCDVENAPTLAVVLRKFEHWLRKAKENLGCSFKGQPTSAIFVTW-TDWDIS 144

Query: 105 FINAELQRINKDPLDPS--------RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
               +  R  K PL            I      + +     R  L       G+    R 
Sbjct: 145 TCLWDECRRKKLPLPGDMLNRIDLKAIFQQWLGSHKIGQKWRGGLKDALNLIGLHFEGR- 203

Query: 157 KHGALLDSHLLSDVYIKMM 175
            H  + D+   S + + ++
Sbjct: 204 PHRGIDDARNTSRLLLHLL 222


>gi|207721998|ref|YP_002252436.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum MolK2]
 gi|206587171|emb|CAQ17755.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum MolK2]
          Length = 489

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 62/224 (27%), Gaps = 32/224 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G   + DR  +   +    + ++     ++F  P+      P +  + GIT +  
Sbjct: 21  DYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPASCLITGITPQQC 80

Query: 71  K-DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           +                        + +N+ +FD         R   DP           
Sbjct: 81  RRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREWQNECGR 140

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              +D +       P                L  L K  G+   H + H AL D      
Sbjct: 141 WDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSKANGLL--HEAAHDALSDVRAT-- 196

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
                +    ++        D  F   KK      + +  +PL 
Sbjct: 197 -----IALARRVRDAQPRLFDFCFALRKKERVLAEIGEAPRPLL 235


>gi|268578589|ref|XP_002644277.1| C. briggsae CBR-CRN-4 protein [Caenorhabditis briggsae]
 gi|187027645|emb|CAP32715.1| CBR-CRN-4 protein [Caenorhabditis briggsae AF16]
          Length = 298

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 27/192 (14%)

Query: 10  IVFDIETTGLDSKND---RIIEIGAVELLDYSKT---NRTFQVFLCPNGRK-NSPEALKL 62
           ++ D ETT      D    II+   V L   +KT      F  F+ P      S    +L
Sbjct: 12  LILDFETTSGGKNRDYPTEIIQFSVVPLDVKAKTMLEGIAFNKFVRPVINPTLSEHCAEL 71

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFF---------------NEQNAEWIAHNAKFDVGFIN 107
            GI  E L    +F  ++ +F ++                + Q+   IA   ++    + 
Sbjct: 72  TGIKQESLNSADTFLVVYKQFLEWLQKNGFQERHFAIVSDSRQDMWRIA---QYQFRLVR 128

Query: 108 AELQRINKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
             +  + +  ++  R  D  L   +++      ++  +    GI +S +  H AL D   
Sbjct: 129 ETMPSMFRQWINIKRTFDDGLEDGQKEKLVGTTNIEKMSNYLGIELSGK-AHDALSDCLN 187

Query: 167 LSDVYIKMMVGG 178
           ++ +  K++  G
Sbjct: 188 IAAITHKILEIG 199


>gi|256083202|ref|XP_002577838.1| prion interactor pint1 [Schistosoma mansoni]
 gi|238663171|emb|CAZ34076.1| prion interactor pint1, putative [Schistosoma mansoni]
          Length = 191

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 30/194 (15%)

Query: 11  VFDIETTGLDSKNDR------IIEIGAVELLDYS--KTNRTFQVFLCPNGRKN-SPEALK 61
           V D E T    + DR      IIE   V +++ S  +T   F  ++ P      S    +
Sbjct: 2   VLDFEAT---CEQDRKLPVAEIIEFP-VLMINASTLQTEAVFHRYVRPTINPVLSDFCTE 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-------FINAELQRIN 114
           L GI    + D+P   ++   F  F +  N   I +   F           +  + + + 
Sbjct: 58  LTGIIQSMVDDQPDLPTVLKIFNSFLDANNLNTIPYQFAFVTCGDCDLKTMLPRQCKALG 117

Query: 115 KDPLDPSRIIDTLSIARR----KHPSSRNDLNSLCKRYGITISH-RSKHGALLDSHLLSD 169
            D  D  +    L         + P     + S     G+ I H    H  + D H +++
Sbjct: 118 IDVPDYFKQWINLKQVYCNVMGQFPFGMMSMLS-----GLNIKHTGRHHSGIDDCHNIAN 172

Query: 170 VYIKMMVGGSQINF 183
           +  +++  G+ ++ 
Sbjct: 173 ILRELIRCGATLDV 186


>gi|73536576|ref|XP_847712.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|321438625|emb|CBZ12384.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 502

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 65/220 (29%), Gaps = 57/220 (25%)

Query: 10  IVFDIETT---GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D E T   G       IIE   V L     +    F  ++ P    K +    +L G
Sbjct: 224 LVCDFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFHRYVRPLRNPKLTAFCTELTG 283

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI------------AHN-------------- 98
           IT E +       ++ ++F D+   +                 +HN              
Sbjct: 284 ITQEMVDVADPLPTVVAQFQDWLKTEVYPLCWMWARHYGPNRLSHNLKSEQRRFVYDEHT 343

Query: 99  ------------------AKFDVGFINAELQ--RINKDPLDPS-RIIDTLSIARRKHPSS 137
                               +D+     +    R   D      R I+            
Sbjct: 344 DAAKANTSAEAMVCMATDGPWDMRRFMHQCSVLRDGVDFPPVCYRYINVRHSYSDHFKCR 403

Query: 138 RNDLNSLCKRYGITISHRSKHGALLD----SHLLSDVYIK 173
           +  L  + K+  ++   R +H  + D    + +L++++ +
Sbjct: 404 QAKLTHMLKKMSMSFEGR-RHSGIDDTRNIARVLAELFAR 442


>gi|226372920|gb|ACO52085.1| Three prime repair exonuclease 2 [Rana catesbeiana]
          Length = 221

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 22/151 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVE---------------LLDYSKTNRTFQVFLCPNGR 53
            I  D+E TGL+    +I E+  V                 +   +      + + P  +
Sbjct: 8   FIFLDLEATGLNEDLPKITELCLVAVHASSLKNPTTNDSGEIQLPRVLDKLCLCIDP-VK 66

Query: 54  KNSPEALKLHGITDEFLK--DKPSFSS-IFSEFWDFFN--EQNAEWIAHN-AKFDVGFIN 107
             +P+A ++ G+ +E L+  +K +F   + +    F N   Q    +AHN   +D   + 
Sbjct: 67  PLTPKASEITGLDNELLRTCEKQTFDESLINTVIQFINRQAQPVCLVAHNGFYYDYPLLK 126

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSR 138
            EL + + D       +D+L   R  H   +
Sbjct: 127 TELLQQDHDLCSSILCVDSLQAFRYLHNEEK 157


>gi|229817290|ref|ZP_04447572.1| hypothetical protein BIFANG_02550 [Bifidobacterium angulatum DSM
           20098]
 gi|229785079|gb|EEP21193.1| hypothetical protein BIFANG_02550 [Bifidobacterium angulatum DSM
           20098]
          Length = 463

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 76/199 (38%), Gaps = 50/199 (25%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYS-------KTNRTFQV-----------------F 47
            DIETTG D   D II++G  E ++          +  T++                   
Sbjct: 235 IDIETTGTDPARDYIIDVGF-EYMNMMSARPADFPSEYTYEQSSYTPGCAYGQSRLSFGV 293

Query: 48  LCPNGRKNSPEALKLHGITDEFLKDKPSFS--SIFSE-------FWDFFNEQNAEWIAHN 98
              N +  +P   K  GI    ++++ + S   IF E             +Q   ++AHN
Sbjct: 294 TDANAKVGNPFIAKFTGI---DVRERGAASGCRIFDEWPEAQLGLLQRLVQQ--PYVAHN 348

Query: 99  AKFDVGFIN------AELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
           A F+ GF        AE  R       D +  SR  D  S+   +HP   N L++  KR 
Sbjct: 349 ATFEHGFFMLNVTGYAEAYRAGGIVIVDTMPMSRQWDPGSVETPEHPYGDNTLDAYAKRQ 408

Query: 149 G-ITISHRSKHGALLDSHL 166
           G +      +H  L D+H+
Sbjct: 409 GALQADQNERHLGLEDAHI 427


>gi|227503021|ref|ZP_03933070.1| oligoribonuclease [Corynebacterium accolens ATCC 49725]
 gi|227076082|gb|EEI14045.1| oligoribonuclease [Corynebacterium accolens ATCC 49725]
          Length = 213

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSP---EALKLH 63
           R +  D+E TGLD +   I+E+ AV          +   + +     + S       ++H
Sbjct: 15  RLVWIDLEMTGLDPERHVIVEVAAVITDGNLNILGKGIDLVVHATEEELSQMDSFVTEMH 74

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINKDP 117
              G+  E  +   +            NE     A    ++   D  FI A + R+++  
Sbjct: 75  ANSGLDKEIRQSATTIREAEDAVLALINEHCEHPAPLAGNSIATDRTFIRAYMPRLDEAL 134

Query: 118 LDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 + T+  +ARR HP +  +                 H AL D
Sbjct: 135 HYRMIDVSTIKELARRWHPRAYYN----------QPDKGMAHRALQD 171


>gi|255075345|ref|XP_002501347.1| exonuclease [Micromonas sp. RCC299]
 gi|226516611|gb|ACO62605.1| exonuclease [Micromonas sp. RCC299]
          Length = 279

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 16/174 (9%)

Query: 9   KIVFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            I  D E  G+     R I+   +V   D +    TF   + P     +    ++ G+  
Sbjct: 33  IIAMDCEMVGVGEDGRRSILARVSVVNEDGNVVLDTF---VAPT-EPVTDYRTRVSGVRP 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-------INKDPLDP 120
           + L+  P F  I  +  D    +    + H  K D+  +  +  R       + +    P
Sbjct: 89  QDLRGAPPFKEIQRKMADILKGR--TLVGHALKNDLRVLLLDHPRRQTRDTALYRPLTRP 146

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCK-RYGITISHRSKHGALLDSHLLSDVYIK 173
            R  +               L  LC    G+ I     H ++ D+     +Y K
Sbjct: 147 LRANERAQDTGIARGRGSRSLKELCAQHLGLEIQGGE-HSSVDDARAALLLYQK 199


>gi|241664639|ref|YP_002982999.1| exonuclease I [Ralstonia pickettii 12D]
 gi|240866666|gb|ACS64327.1| Exodeoxyribonuclease I [Ralstonia pickettii 12D]
          Length = 479

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 60/220 (27%), Gaps = 30/220 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G   + DR  +   +    + ++     ++F  P N     P +  + GIT +  
Sbjct: 11  DYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLITGITPQQC 70

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +                       + +N  +FD         R   DP           
Sbjct: 71  ARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYAREWQNECGR 130

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              +D +       P                L  L K  G+   H + H A+ D      
Sbjct: 131 WDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLV--HEAAHDAVSDVRAT-I 187

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
              +++       F F        +++ +    I    R 
Sbjct: 188 ALARLIRNAQPRLFDF----CLALRKKDRVAAEIGDAPRP 223


>gi|77360198|ref|YP_339773.1| exonuclease I [Pseudoalteromonas haloplanktis TAC125]
 gi|76875109|emb|CAI86330.1| exodeoxyribonuclease I [Pseudoalteromonas haloplanktis TAC125]
          Length = 481

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 63/194 (32%), Gaps = 27/194 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G   + D+  +   V   LD +        +  P       PEA  + GIT +  
Sbjct: 15  DYETWGASPQKDKPSQFAGVRTDLDLNIIGEPLIEYCKPQADYLPHPEACLITGITPQVA 74

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGF---INAELQRINKDPLDP 120
           +K     +   ++    F+  N     +N+ +FD       F        +R  K+    
Sbjct: 75  MKKGLVEAEFIAKIHAQFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYKNNNSR 134

Query: 121 SRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             IID +       P                L  L    GI   H + H AL D  + + 
Sbjct: 135 WDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIE--HAAAHDALSD--VTAT 190

Query: 170 VYIKMMVGGSQINF 183
           + +  ++   Q   
Sbjct: 191 IALAKLIKDKQPKL 204


>gi|309800379|ref|ZP_07694545.1| DNA polymerase III subunit epsilon [Streptococcus infantis
          SK1302]
 gi|308116010|gb|EFO53520.1| DNA polymerase III subunit epsilon [Streptococcus infantis
          SK1302]
          Length = 100

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 8/89 (8%)

Query: 4  KNKMR-KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K+R  I FD+E    +   D+  +I++ AV   D  +    F  ++            
Sbjct: 1  MEKLRDYISFDLE---FNKHQDKTHLIQVSAVRFKDGEEVG-AFDSYVH-TDVPLKSFIN 55

Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNE 89
           L GIT E LKD P    +   F DF  E
Sbjct: 56 GLTGITSETLKDAPMVEEVLKNFQDFVGE 84


>gi|121610584|ref|YP_998391.1| putative DNA exonuclease X [Verminephrobacter eiseniae EF01-2]
 gi|121555224|gb|ABM59373.1| Exodeoxyribonuclease X [Verminephrobacter eiseniae EF01-2]
          Length = 224

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 70/222 (31%), Gaps = 23/222 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M  ++F  +TTGL      I++   + + D         F+    P G+     AL  H 
Sbjct: 1   MTALIFGTKTTGLH--EPAIVQAAWLMVKDPFTLTVVERFEQRYNP-GKPIELGALATHH 57

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPS-- 121
           I DE L D P      S F           I H+  +D   I A  ++RI    L     
Sbjct: 58  ILDEELADCPP----ASGFS--LPPGTEYLIGHDVDYDWRVIGAPPVKRICTLALARWLL 111

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
             ID+ + A   +   R   +SL +           H A  D    + V   ++     I
Sbjct: 112 ADIDSHTQAAMLYLFERGSASSLLQH---------AHSARHDVMHCAIVLEHLLARMGDI 162

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
                        E+ +    ++  K      +    +    
Sbjct: 163 TEATTWQTLWQRSEQARIPKTLTFGKHKGLATSAAPSDYKHW 204


>gi|317419306|emb|CBN81343.1| RNA exonuclease 4 [Dicentrarchus labrax]
          Length = 426

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 15/166 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D E  G+    +  I +  V L++ + K    +  ++ P  +          GI 
Sbjct: 237 RAVAIDCEMVGVGPDGEESI-LARVSLVNQFGKCI--YDKYVKPTEKVTDYR-TAFSGIR 292

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +KD     ++  E  +    Q    + H    D+  +  +  +         +    
Sbjct: 293 PEDIKDGEDVKTVQKEVAEIL--QGRIVVGHAIHNDLKILLLDHPKKKIRDTQKYKPF-- 348

Query: 127 LSIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVY 171
               ++   S R  L  LCK    + +     H ++ D+     +Y
Sbjct: 349 ----KKTVKSGRPSLKLLCKEILNVNVQQGE-HSSVQDAQATMRLY 389


>gi|149189379|ref|ZP_01867664.1| hypothetical protein VSAK1_25975 [Vibrio shilonii AK1]
 gi|148836737|gb|EDL53689.1| hypothetical protein VSAK1_25975 [Vibrio shilonii AK1]
          Length = 176

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 69/184 (37%), Gaps = 20/184 (10%)

Query: 4   KNKMRKIVFDIE----------TTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNG 52
            N  R + FD+E          TTG       IIE+G  E+ L   +  +  Q ++ P  
Sbjct: 1   MNYNRVVCFDLEMCCWNVDGVGTTG------EIIEVGLAEIDLVKQEVVKRAQYYVKPET 54

Query: 53  RKNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            K S    +L GIT   + K     +S+       F   N  + +   + D+  +     
Sbjct: 55  DKVSLFCTELTGITPRKVEKQGRPLASVIQSMVKNFGGPNKIYASW-GRDDIILLEECQS 113

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +  + P      + TL   + +    R    +  +  GI    R  H   +D++ L+ + 
Sbjct: 114 KGIEMPFKEFVNLATLYRIQNRLKDKRIGHKAAQESQGIEWEGRQ-HSGYVDAYNLAKLA 172

Query: 172 IKMM 175
           + M+
Sbjct: 173 LTML 176


>gi|56270497|gb|AAH87528.1| LOC496097 protein [Xenopus laevis]
          Length = 223

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 22/175 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M +    R +  D+E TGLD + D IIE+   +   +         + +          +
Sbjct: 38  MAKDMGQRMVWVDLEMTGLDIEKDEIIEMACLITDSNLDILAEGPNLIIKQPDELLDGMS 97

Query: 60  --LKLH----GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAE 109
              K H    G+T    + + +      EF  F  +           ++   D  F++  
Sbjct: 98  DWCKEHHGKSGLTQAVRESRITLQQAEYEFLSFIRQHTPPGVCPLAGNSVHADKKFLDKY 157

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + R  +        + T+  + RR HP            YG+     + H AL D
Sbjct: 158 MPRFMRHLHYRIIDVSTVKELCRRWHPVE----------YGLAPKKAASHRALDD 202


>gi|311259462|ref|XP_003128134.1| PREDICTED: ERI1 exoribonuclease 3-like [Sus scrofa]
          Length = 232

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 57  MVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 116

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
             +P   +L GI    +  +PS   +     ++  ++ 
Sbjct: 117 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEG 154


>gi|55959492|emb|CAI12492.1| prion protein interacting protein [Homo sapiens]
          Length = 250

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 133 MVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 192

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
             +P   +L GI    +  +PS   +     ++  ++ 
Sbjct: 193 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEG 230


>gi|119627447|gb|EAX07042.1| prion protein interacting protein, isoform CRA_a [Homo sapiens]
          Length = 213

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 57  MVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 116

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
             +P   +L GI    +  +PS   +     ++  ++ 
Sbjct: 117 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEG 154


>gi|304409797|ref|ZP_07391417.1| Exodeoxyribonuclease I [Shewanella baltica OS183]
 gi|307304154|ref|ZP_07583907.1| Exodeoxyribonuclease I [Shewanella baltica BA175]
 gi|304352315|gb|EFM16713.1| Exodeoxyribonuclease I [Shewanella baltica OS183]
 gi|306913052|gb|EFN43475.1| Exodeoxyribonuclease I [Shewanella baltica BA175]
          Length = 472

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 55/179 (30%), Gaps = 27/179 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G +   DR  +   +   LD +        +         SPEA+ + GIT +  
Sbjct: 15  DYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGITPQLA 74

Query: 70  -LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI---- 123
            LK  P  +         F++ N     +N+ +FD         R   DP          
Sbjct: 75  NLKGIP-ETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNS 133

Query: 124 ----IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
               ID +       P                L  L    G  +SH   H A+ D +  
Sbjct: 134 RWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTHANG--LSHEKAHDAMSDVYAT 190


>gi|303276969|ref|XP_003057778.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460435|gb|EEH57729.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 442

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 62/173 (35%), Gaps = 22/173 (12%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           D E  G D        + A   +   +        + P  R  +    +L G+T+E L+ 
Sbjct: 178 DCEMVGDDVDGGGA--MCARVCVVDERGTALLSTHVAPT-RPVTDYRTELTGVTEESLRG 234

Query: 73  KPSFSSIFSEFWDFFNE----------QNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            PSF  + +                   +A  + H+   D+  ++   +      +  + 
Sbjct: 235 APSFEDVRARVLALIRGGGGGGEVTPHDHAFLVGHDLAHDLECLDIARE------IPRAM 288

Query: 123 IIDTLSIA-RRKHPSSRNDLNSLCKRY-GITI-SHRSKHGALLDSHLLSDVYI 172
           + DT + A  ++H      L +L + + G+ I +    H    D+H    +Y+
Sbjct: 289 LRDTATYAPFKRHTHRPYKLRTLAEAFLGLHIQTDGVAHDPREDAHAAMRLYL 341


>gi|262372371|ref|ZP_06065650.1| exonuclease [Acinetobacter junii SH205]
 gi|262312396|gb|EEY93481.1| exonuclease [Acinetobacter junii SH205]
          Length = 229

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 96/230 (41%), Gaps = 34/230 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVF--LCPNGRKNSPEALKL 62
           M+ I+ D ET    + N   IEI    +E+     +    ++F  L   G+  S  A+ +
Sbjct: 1   MQAIILDTET---HTLNGLPIEIAYAPIEIESGKLSLDKTKIFDQLYQVGQPISYAAMAV 57

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H I +  L D+P ++           EQ A  I HN  +D+  I     +   D +   +
Sbjct: 58  HHILESDLIDQPFYNEF------ELPEQTAYIIGHNVDYDISAI----AKCGVD-VSKLK 106

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISH-------RSKHGALLDSHLLSDVYIKM 174
            I TL++ARR   ++  +++++L   Y I+          +  H A  D  L +++ + +
Sbjct: 107 PICTLALARRVWENAEAHNISALI--YLISKGSDKAREMLKGAHRADADIILTANILMHI 164

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDE 223
           +      +   +T E  +   E+  +P +IS  K      + +  + +  
Sbjct: 165 IH-----HLNIQTIEQLYVASEEARIPKSISFGKHKGTSISDLPTDYVQW 209


>gi|254974985|ref|ZP_05271457.1| putative exonuclease [Clostridium difficile QCD-66c26]
 gi|255092373|ref|ZP_05321851.1| putative exonuclease [Clostridium difficile CIP 107932]
 gi|255314113|ref|ZP_05355696.1| putative exonuclease [Clostridium difficile QCD-76w55]
 gi|255516791|ref|ZP_05384467.1| putative exonuclease [Clostridium difficile QCD-97b34]
 gi|255649892|ref|ZP_05396794.1| putative exonuclease [Clostridium difficile QCD-37x79]
 gi|260683047|ref|YP_003214332.1| putative exonuclease [Clostridium difficile CD196]
 gi|260686645|ref|YP_003217778.1| putative exonuclease [Clostridium difficile R20291]
 gi|260209210|emb|CBA62475.1| putative exonuclease [Clostridium difficile CD196]
 gi|260212661|emb|CBE03715.1| putative exonuclease [Clostridium difficile R20291]
          Length = 1039

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 12/156 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIE +GLD  N  I+E+GAV++ D+     T++  +                +    
Sbjct: 12  VFLDIEVSGLDCLNSEILEVGAVKVKDWKI--YTYESLIKNKFEVPIEVFSVCKNLDKND 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+       +     +F   +++  I H+      F    + ++       ++ ID + +
Sbjct: 70  LEIANEIELVEDRLVNFV--EDSFIICHDLSLKKKFFEYHMPKLK------NKFIDLIEL 121

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164
           A    P  +   L  L        + + ++ AL D+
Sbjct: 122 AVILEPYHKDYSLEYLKNTL-TNCNSKVENRALSDA 156


>gi|326925262|ref|XP_003208837.1| PREDICTED: ERI1 exoribonuclease 3-like [Meleagris gallopavo]
          Length = 484

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 60/177 (33%), Gaps = 21/177 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M      R    +V D E T    +     IIE   ++L     +   TF +++ P    
Sbjct: 154 MSSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 213

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-F 105
             +P   +L GI    +  +PS   +     ++  ++        + ++     +D+   
Sbjct: 214 QLTPFCTELTGIIQGMVDGQPSLQQVLERVDEWMAKEGLLDPSVKSIFVT-CGDWDLKVM 272

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHG 159
           +  + Q +     D  +    L  A         +N L  + K  G+ + H    H 
Sbjct: 273 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGSWPKNGLLDMNK--GLNLQHIGRPHS 327


>gi|291456211|ref|ZP_06595601.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213]
 gi|291381488|gb|EFE89006.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213]
          Length = 484

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 73/198 (36%), Gaps = 48/198 (24%)

Query: 12  FDIETTGLDSKNDRIIEIGA--VELLDYSKTN--------------------RTFQVFLC 49
            DIETTG D   D II++G   + ++    T+                          + 
Sbjct: 255 IDIETTGTDPARDYIIDVGFEFMNMVSPRPTDVPNGYAYEQGYYDAGDAYGQSRLDFGVP 314

Query: 50  PNGRKNSPE-ALKLHGITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNA 99
           P       E   KL GI    ++D+           +    +       +Q   ++AHNA
Sbjct: 315 PANAALGNELIRKLTGI---DVRDRSSKAGHRLFDEWPEAQTGLLARLTQQ--PYVAHNA 369

Query: 100 KFDVGFIN------AELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
            F+  +        AE  R  +    D L  SR  D  S+   +HP   N L++  KR G
Sbjct: 370 TFEHSWFMLNVAGYAEAYRAGRITIIDTLPMSRQWDPGSVPNDEHPYGDNTLDAYAKRQG 429

Query: 150 -ITISHRSKHGALLDSHL 166
            +  +H  +H  L D+H+
Sbjct: 430 ALDSAHNERHLGLEDTHI 447


>gi|225028307|ref|ZP_03717499.1| hypothetical protein EUBHAL_02579 [Eubacterium hallii DSM 3353]
 gi|224954353|gb|EEG35562.1| hypothetical protein EUBHAL_02579 [Eubacterium hallii DSM 3353]
          Length = 210

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 54/156 (34%), Gaps = 7/156 (4%)

Query: 25  RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFW 84
            II++GAV L +  K   T   ++ P           L GI    +K+ P          
Sbjct: 18  EIIQVGAVLLDEEYKEIGTLCQYVHPEFGILDYFITNLTGIEKGQIKNAPKLKDALIHMA 77

Query: 85  DFFNEQNAEWIAH----NAKFDVGFINAELQRINKDPLD-PSRIIDTLSIARRKHPSSR- 138
           D+  E+  +  A       + D    + +L     D L  P R +D   I  +K+   + 
Sbjct: 78  DWLGEREYKVFAWSKSDYWQLDHEIKSKKLNDEKLDELMKPERWVDYQEIFGKKYNFEQA 137

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             L        I    R  H  L D+   + +  K+
Sbjct: 138 VGLQEALMLCDIEPDGR-MHDGLDDAWNTARLIEKL 172


>gi|71892235|ref|YP_277968.1| exonuclease I [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796341|gb|AAZ41092.1| exonuclease I [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 500

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 25/194 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLHGITDE 68
           ++D ET G++   DR  +   +   +  K     ++F C   N     P+++ + GI  +
Sbjct: 14  IYDYETFGINPALDRPAQFAGIRTNNTLKPIEKEKIFFCRLSNDYLPDPQSVLITGIAPQ 73

Query: 69  F-LKDKPSFSSIFSEFWD-FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-----S 121
             L+     S         F   +      +N  FD  F      R   DP        +
Sbjct: 74  DTLRHGLIESEFARRIHQLFCIPKTCILGYNNIHFDDEFSRNIFYRNFHDPYLWAYQRGN 133

Query: 122 RIIDTLSIARRKHPSSRN--------------DLNSLCKRYGITISHRSKHGALLDSHLL 167
              D L + R  +    N               L  L +   I   H S H A+ D +  
Sbjct: 134 SRWDLLHVLRACYSLCPNGITWPLNIQNKPSFRLKDLTQANAIK--HLSAHDAMSDVYAT 191

Query: 168 SDVYIKMMVGGSQI 181
            ++   +     Q+
Sbjct: 192 LELTKLIKEAQPQL 205


>gi|56708263|ref|YP_170159.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670734|ref|YP_667291.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457383|ref|ZP_03665856.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370748|ref|ZP_04986753.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875083|ref|ZP_05247793.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604755|emb|CAG45833.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321067|emb|CAL09216.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568991|gb|EDN34645.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254841082|gb|EET19518.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159490|gb|ADA78881.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 482

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 60/198 (30%), Gaps = 26/198 (13%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEALKL 62
           +    + +D+ET+G+++  D++++  A+ +         F  F+   P+    SP A   
Sbjct: 3   SNQTLLFYDLETSGINNSFDQVLQFAAIRIDLDFNEIERFNFFVKLNPDTTP-SPMATIT 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP- 120
           H I+        +      +     N      I +N   FD  F+     +    P    
Sbjct: 62  HHISIAQANTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121

Query: 121 ----SRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT---------------ISHRSKHG 159
                   D   I    +      LN        G                  S    H 
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHD 181

Query: 160 ALLDSHLLSDVYIKMMVG 177
           A+ D  +  ++  K++  
Sbjct: 182 AITDVIVTVELAKKLIAA 199


>gi|254374578|ref|ZP_04990059.1| hypothetical protein FTDG_00751 [Francisella novicida GA99-3548]
 gi|151572297|gb|EDN37951.1| hypothetical protein FTDG_00751 [Francisella novicida GA99-3548]
          Length = 482

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 65/196 (33%), Gaps = 28/196 (14%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEALKL 62
           +    + +D+ET+G+++  D++++  A+           F  F+   P+    SP A   
Sbjct: 3   SNQTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTP-SPMATIT 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFIN-------------- 107
           H I+        +      +     N      I +N   FD  F+               
Sbjct: 62  HHISIAQANTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121

Query: 108 --AELQRINKDPLDPSRII---DTLSIARRKHPSSRN----DLNSLCKRYGITISHRSKH 158
                 R +  P+     +   + L+  +      +      L +L +   +  S    H
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEDGQEKTSLKLENLNQNNSL-YSGGRAH 180

Query: 159 GALLDSHLLSDVYIKM 174
            A+ D  +  ++  K+
Sbjct: 181 DAITDVIVTVELAKKL 196


>gi|310795164|gb|EFQ30625.1| exonuclease [Glomerella graminicola M1.001]
          Length = 324

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 60/167 (35%), Gaps = 13/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G+       + +  V ++D+    + +  ++ P  R     +  + GI  
Sbjct: 136 KYVAIDCEMVGVGQGGYESV-LARVSIVDFHG-RQVYDSYVRPQERVTDWRS-AVSGILP 192

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++    F  + ++      ++    + H+ K D+  +          P    R     
Sbjct: 193 KHMRFARDFDEVQADVAKLLKDR--ILVGHDIKHDLDVLKLSH------PSKDVRDTSNY 244

Query: 128 SIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIK 173
              R+     +  L  L +   G+TI     H ++ D+ +   ++ K
Sbjct: 245 PGFRKYGNGRKPALRRLAEEVLGVTI-QSGAHSSIEDARVTMLLFRK 290


>gi|300775119|ref|ZP_07084981.1| exonuclease [Chryseobacterium gleum ATCC 35910]
 gi|300505859|gb|EFK36995.1| exonuclease [Chryseobacterium gleum ATCC 35910]
          Length = 183

 Score = 60.6 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 66/176 (37%), Gaps = 11/176 (6%)

Query: 9   KIVFDIETTGLDSK-----NDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            ++ D+E T  +++        IIEIG  +      K +++  + + P   K SP   +L
Sbjct: 7   ILIVDLEATCWENRPPRGQESEIIEIGVCIMNAKTGKISKSEGILIKPQHSKVSPFCTEL 66

Query: 63  HGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
             IT   L  +       F      ++ +   W A    +D+  +  + +R   D     
Sbjct: 67  TTITQSMLDHEGIMLDDAFDILRAEYDSEELTW-ASYGNYDLNMLQNQARRFYTDYPMSD 125

Query: 122 RIIDTLSIARRKHPSSRNDLN--SLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             I+  ++    HP+ R  +         G T+   + H  + D+  ++ +    +
Sbjct: 126 DHINVKTLFGEIHPTIRKSVGMQRALGELGFTLEG-THHRGVDDARNIAKILHWCL 180


>gi|299753899|ref|XP_001833615.2| double-strand siRNA ribonuclease [Coprinopsis cinerea okayama7#130]
 gi|298410514|gb|EAU88160.2| double-strand siRNA ribonuclease [Coprinopsis cinerea okayama7#130]
          Length = 389

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 63/170 (37%), Gaps = 26/170 (15%)

Query: 9   KIVFDIETT---GLDSKN-DRIIE--IGAVELLDYS--------KTNRTFQVFLCPNGRK 54
            +V DIE T   G D    + IIE  +  +   D          +    F+ F+ P  R 
Sbjct: 143 FLVLDIEGTCDQGSDLDFPNEIIEFPVCLLTWNDKGQDMSASELEVIDEFRSFVRPTWRP 202

Query: 55  NSPEALK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
              +  K L GIT E +   P+F  + ++F  F  +        N + +   +       
Sbjct: 203 VLTDFCKDLTGITQEQVDSAPTFPEVLAQFEAFIKKNGLI----NDEGEP--LVRFCWCT 256

Query: 114 NKDPLDPSRIIDTLSIARRKHP--SSRNDLN--SLCKRYGITISHRSKHG 159
           +      + II    I++   P     N L+  +L + Y +    RS HG
Sbjct: 257 DGPFDIQNFIIKQCFISKLPLPWWLKGNVLDVRTLVQHY-VAKQTRSNHG 305


>gi|46205675|ref|ZP_00048217.2| hypothetical protein Magn03001139 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 255

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 91  NAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
               +AHNA FD  F+ AE+ R      +DP   + T  +A R    SR  L + C   G
Sbjct: 4   GRVLVAHNAAFDTRFLRAEIGRAGIAAAIDPVACLCTQQLASRYLTGSR-ALAACCAAVG 62

Query: 150 ITISHRSKHGALLDSHLLSDVY 171
           +   H   H AL D+   + + 
Sbjct: 63  VV--HDGVHSALGDARATAGLL 82


>gi|56606076|ref|NP_001008510.1| interferon-stimulated gene 20 kDa protein [Rattus norvegicus]
 gi|55824691|gb|AAH86557.1| Interferon stimulated exonuclease 20 [Rattus norvegicus]
          Length = 181

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 63/166 (37%), Gaps = 15/166 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D E  GL  +  R+  +    +++ +S     +  ++ P G        ++ GIT +
Sbjct: 8   VAMDCEMVGLGPQ--RVSGLARCSIVNVHSAVL--YDKYIQPEGEITDYR-TQVSGITPQ 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     F+    E       +    + H+ K D   +  ++++     +  +     L 
Sbjct: 63  HMARATPFAEARLEILQLL--KGKLVVGHDLKHDFSALKEDMRKY---TIYDTSTDMLLW 117

Query: 129 IARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVY 171
              + H  SR  L  LCKR     I  + R  H ++ D+    ++Y
Sbjct: 118 HEAKLHCYSRVSLRLLCKRLLHKSIQNNWRG-HCSVEDARATMELY 162


>gi|119953333|ref|YP_945542.1| DNA polymerase I [Borrelia turicatae 91E135]
 gi|119862104|gb|AAX17872.1| DNA polymerase I [Borrelia turicatae 91E135]
          Length = 919

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 30/146 (20%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +  +   +  D ETT L+    +II I            + F+ +  P   K      K 
Sbjct: 346 KLKQANYVAIDTETTSLNVHEAQIIGISVSF--------KEFESYYIPIETKEKKTIEK- 396

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                         + I  +F +FF  Q  + I  N KFD   +    ++   + + P  
Sbjct: 397 --------------AYIIQKFNEFFKAQP-KLIGQNYKFDYKIL----KKHEFNVIPP-- 435

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
             DT+  A    P+++  L+ L ++Y
Sbjct: 436 YFDTMIAAYVIDPNTKVSLDFLAEKY 461


>gi|83746387|ref|ZP_00943439.1| Exodeoxyribonuclease I [Ralstonia solanacearum UW551]
 gi|207744660|ref|YP_002261052.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum IPO1609]
 gi|83726928|gb|EAP74054.1| Exodeoxyribonuclease I [Ralstonia solanacearum UW551]
 gi|206596067|emb|CAQ62994.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum IPO1609]
          Length = 489

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 62/224 (27%), Gaps = 32/224 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G   + DR  +   +    + ++     ++F  P+      P +  + GIT +  
Sbjct: 21  DYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPASCLITGITPQQC 80

Query: 71  K-DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           +                        + +N+ +FD         R   DP           
Sbjct: 81  RRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREWQNECGR 140

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              +D +       P                L  L K  G+   H + H AL D      
Sbjct: 141 WDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSKANGLL--HEAAHDALSDVRAT-- 196

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
                +    ++        D  F   KK      + +  +PL 
Sbjct: 197 -----IALARRVRDAQPRLFDFCFALRKKERVLAEIGETPRPLL 235


>gi|300690052|ref|YP_003751047.1| exodeoxyribonuclease I [Ralstonia solanacearum PSI07]
 gi|299077112|emb|CBJ49735.1| exodeoxyribonuclease I [Ralstonia solanacearum PSI07]
          Length = 489

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 64/220 (29%), Gaps = 30/220 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G   + DR  +   +    + ++     ++F  P+      P +  + GIT +  
Sbjct: 21  DYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPVSCLITGITPQQC 80

Query: 71  K-DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           +      +                 + +N+ +FD         R   DP           
Sbjct: 81  RRQGIPENRFAQAIERELAMPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREWQNECGR 140

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              +D +       P                L  L +  G+   H + H AL D      
Sbjct: 141 WDLLDVVRTTWALRPDGIEWPKNGDGKPSFKLEHLSQANGLL--HEAAHDALSDVRAT-I 197

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
              +++       F F        +++++ +  I    R 
Sbjct: 198 ALARLIRNAQPRLFDF----CFALRKKERVLAEIGDAPRP 233


>gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
 gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
          Length = 926

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 51/145 (35%), Gaps = 32/145 (22%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N  + +  D ETTGLD   D II I                       R N    L + G
Sbjct: 353 NSKKLVCVDFETTGLDVFKDTIIGISFA-------------------IRSNEAFYLDVSG 393

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            T+    DK          ++   +++ + I HN K++   + A  +         +   
Sbjct: 394 RTN---IDKDKC---IDMVFETLAKEDIKVIGHNLKYEYKMMRAINKSFG------NMYF 441

Query: 125 DTLSIARRKHP-SSRNDLNSLCKRY 148
           DT+  A   +P   R +++ L   Y
Sbjct: 442 DTMVAAYLINPTRGRYNMDDLAIAY 466


>gi|218187984|gb|EEC70411.1| hypothetical protein OsI_01406 [Oryza sativa Indica Group]
          Length = 544

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 14/182 (7%)

Query: 9   KIVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D E T     +     IIE    +      +   +FQ ++ P   +  +    +L 
Sbjct: 261 FVVIDFEATCDKENNPHPQEIIEFPSVLVNSATGQLEASFQTYVRPAYNQLLTDFCKELT 320

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINK--D 116
           GI    +      S        +  E+         +   + +D   +     R+ +   
Sbjct: 321 GIQQIQVDRGVPLSEALLMHDKWLEEKGIKHKNFAVVTW-SNWDCRVMLESECRLKRIRK 379

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P   +R I+     +      R +L    +  G+T   R  H  L D+   + +   +M 
Sbjct: 380 PPYFNRWINLKVPFQEVFGGVRCNLKEAVQLSGLTWEGR-AHCGLDDARNTARLLALLMH 438

Query: 177 GG 178
            G
Sbjct: 439 RG 440


>gi|115435988|ref|NP_001042752.1| Os01g0280000 [Oryza sativa Japonica Group]
 gi|56783678|dbj|BAD81090.1| putative 3' exoribonuclease [Oryza sativa Japonica Group]
 gi|56784201|dbj|BAD81586.1| putative 3' exoribonuclease [Oryza sativa Japonica Group]
 gi|113532283|dbj|BAF04666.1| Os01g0280000 [Oryza sativa Japonica Group]
 gi|215737104|dbj|BAG96033.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222618206|gb|EEE54338.1| hypothetical protein OsJ_01314 [Oryza sativa Japonica Group]
          Length = 411

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 14/182 (7%)

Query: 9   KIVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            +V D E T     +     IIE    +      +   +FQ ++ P   +  +    +L 
Sbjct: 128 FVVIDFEATCDKENNPHPQEIIEFPSVLVNSATGQLEASFQTYVRPAYNQLLTDFCKELT 187

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINK--D 116
           GI    +      S        +  E+         +   + +D   +     R+ +   
Sbjct: 188 GIQQIQVDRGVPLSEALLMHDKWLEEKGIKHKNFAVVTW-SNWDCRVMLESECRLKRIRK 246

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P   +R I+     +      R +L    +  G+T   R  H  L D+   + +   +M 
Sbjct: 247 PPYFNRWINLKVPFQEVFGGVRCNLKEAVQLSGLTWEGR-AHCGLDDARNTARLLALLMH 305

Query: 177 GG 178
            G
Sbjct: 306 RG 307


>gi|315126831|ref|YP_004068834.1| exonuclease I [Pseudoalteromonas sp. SM9913]
 gi|315015345|gb|ADT68683.1| exonuclease I [Pseudoalteromonas sp. SM9913]
          Length = 481

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 27/194 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G   + D+  +   V   LD +        +  P       PEA  + GIT +  
Sbjct: 15  DYETWGASPQKDKPSQFAGVRTDLDLNIIGEPLIEYCKPQADYLPHPEACLITGITPQVA 74

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGF---INAELQRINKDPLDP 120
           ++     +   ++    F+  N     +N+ +FD       F        +R  K+    
Sbjct: 75  MQKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYKNNNSR 134

Query: 121 SRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             IID +       P                L  L    GI   H + H AL D  + + 
Sbjct: 135 WDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIE--HAAAHDALSD--VTAT 190

Query: 170 VYIKMMVGGSQINF 183
           + +  ++   Q   
Sbjct: 191 IALAKLIKEKQPKL 204


>gi|260801283|ref|XP_002595525.1| hypothetical protein BRAFLDRAFT_69069 [Branchiostoma floridae]
 gi|229280772|gb|EEN51537.1| hypothetical protein BRAFLDRAFT_69069 [Branchiostoma floridae]
          Length = 222

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 60/180 (33%), Gaps = 29/180 (16%)

Query: 9   KIVFDIETTGLDSKND----RIIEIGAVELLDYS--KTNRTFQVFLCP-NGRKNSPEALK 61
             V D E T +  +       IIE GAV ++D S  +    F  F  P           +
Sbjct: 10  YCVVDFEATCIKPRRADFRTEIIEFGAV-IVDGSNFQMADEFHEFCRPVENPVLHQFCKE 68

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK------FDVGFINAELQRINK 115
           L GI  + +     F  +F  F  + + +    I  N        FD   I      +++
Sbjct: 69  LTGIQQDTVDSADPFPVVFDRFQKWLSNRG--LIDSNFALVTDGIFDCNQIMRSQCEVSQ 126

Query: 116 DPLD------PSRIIDTLSIA----RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
                      +  I  +       RR  P+ R  +  + +  GI+      H A+ D+ 
Sbjct: 127 MSFPSFARRFSNIKIHYMQFMGIRLRRGQPTPR--IPDMLRALGISQEG-QLHSAISDAR 183


>gi|296118714|ref|ZP_06837290.1| oligoribonuclease [Corynebacterium ammoniagenes DSM 20306]
 gi|295968203|gb|EFG81452.1| oligoribonuclease [Corynebacterium ammoniagenes DSM 20306]
          Length = 222

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 57/169 (33%), Gaps = 23/169 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP---NGRKNSPEALKLH 63
           R +  D+E TGLD K   I+EI A+    + +       + +        +       +H
Sbjct: 22  RLVWIDLEMTGLDPKRHTIVEIAAIITDAELNVIGEGLDIVIHATDEELSRMDDFVTNMH 81

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRINK 115
              G+T+E      +     +   +        E  A    ++   D  FI   + R++K
Sbjct: 82  NSSGLTEEIKAATTTLKEAETAVLELIEKHCDPEHPAPLAGNSIATDRTFIREYMPRLDK 141

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  +ARR HP            +         H AL D
Sbjct: 142 ALHYRMIDVSTIKELARRWHPR---------AYFNQP-DKGLAHRALAD 180


>gi|262278391|ref|ZP_06056176.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258742|gb|EEY77475.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 228

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 93/230 (40%), Gaps = 34/230 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVF--LCPNGRKNSPEALKL 62
           M+ I+ D ET    + N   IEI    +EL +   T    ++F  L   G   S  A+ +
Sbjct: 1   MQAIILDTET---HTLNGLPIEIAYAPIELNEGKLTLDKSKLFDQLYQVGAPISYAAMAV 57

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H I +  L+++P     +  F     E     I HN  +D+  I     R   D +   +
Sbjct: 58  HHILETDLENQP----HYKTFK--LPESTTYIIGHNIDYDIAAI----ARCGVD-VSNIK 106

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISH-------RSKHGALLDSHLLSDVYIKM 174
            I TL++AR+    +  +++++L   Y I+          +  H A  D  L +++ + +
Sbjct: 107 PICTLALARKVWADAEAHNISALI--YMISQGSSKAREMLKGAHRADADIILTANILMHI 164

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDE 223
           +      +   +  E+ +   E+  +P  ++  K        + K+ +  
Sbjct: 165 VY-----HLNIQDIEELYRISEEARIPTTVNFGKHKGTAIAELPKDYIQW 209


>gi|116326190|ref|YP_803516.1| EXO III v-trex [Anticarsia gemmatalis nucleopolyhedrovirus]
 gi|46242295|gb|AAS83208.1| 3' repair exonuclease [Anticarsia gemmatalis nucleopolyhedrovirus]
 gi|112180928|gb|ABI13905.1| EXO III v-trex [Anticarsia gemmatalis nucleopolyhedrovirus]
          Length = 230

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 59/204 (28%), Gaps = 43/204 (21%)

Query: 9   KIVFDIETTG---LDSKNDRIIEIG--AVELLDYSKTNRTFQ--VFLCPNGRKNSPEALK 61
            +  D+ETTG   L +   +I E+    V   +     R               S +A  
Sbjct: 7   YVFLDLETTGLPKLQNDQTQITELSLQCVTREELLGAARVCNKLTLCFEPTVPISEQASA 66

Query: 62  LHGITDEFLKDKPSFS----SIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINK- 115
           L  +  E L+ +P F     ++   F    +      +A+N   FD   +   L+     
Sbjct: 67  LTQLNAENLRGQPLFDKRAVALIESFLALLSPPVC-LVAYNGFAFDFPILYKHLKDNGFA 125

Query: 116 -------------------DPLDPSR------IIDTLSIARRKHPSSRNDLNSLCKRY-G 149
                               P    R       +      R   P     L  L KR+ G
Sbjct: 126 SAVQCADAYHALFAILDGSGPPTMKRSKSGTVTVKLCPWQRGARPKQSYKLVDLYKRHVG 185

Query: 150 ITISHRSKHGALLDSHLLSDVYIK 173
             +     H A  D  ++  +  K
Sbjct: 186 GNLKG---HRAEDDCAMMMQLVQK 206


>gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
 gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
          Length = 879

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 31/150 (20%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FD ETTGL+++  +I+        +       F V L         +          
Sbjct: 318 IIAFDTETTGLNAREAKIVGFSFCVSEN-----EAFYVPLNHTYLAVPSQIS-------- 364

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               K +   I+S F           I HN K+D   I    +        P +  DT+ 
Sbjct: 365 MQAAKRALGQIYSHF----------IIGHNLKYDFAIIENNFK-----LTPPKKYADTMI 409

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKH 158
           +A   +PS R +++ L  R      +++ H
Sbjct: 410 LAWLYNPSLRVNMDDLALRL---FDYKTLH 436


>gi|152977204|ref|YP_001376721.1| sporulation inhibitor KapD [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025956|gb|ABS23726.1| Exonuclease RNase T and DNA polymerase III [Bacillus cytotoxicus
           NVH 391-98]
          Length = 207

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 61/188 (32%), Gaps = 18/188 (9%)

Query: 4   KNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
            ++ + +  D E T         G   +   IIE+G V ++       T+  ++ P    
Sbjct: 1   MDEKQFLFLDFEFTMPQNRKKPKGFFPE---IIEVGLVSVI-GCTMEDTYSSYVRPESFP 56

Query: 55  -NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             +       GI  E +    SF ++  +   +        +      D+  +    +  
Sbjct: 57  DLTNRCKDFLGIDQEAVDGGISFLALVDKLVQYEERYKPTIVTW-GNMDMKVLKHNCEVA 115

Query: 114 NKDPLDPSRIID-TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                      D +L   R     ++  L    + YG  +     H AL D+    +++ 
Sbjct: 116 GVPFPFSGVCRDLSLEYKRFFGERNQTGLWKAIEAYG-KVGTGKHHCALDDAMTTYNIF- 173

Query: 173 KMMVGGSQ 180
           K++    +
Sbjct: 174 KLVEKDKE 181


>gi|329120482|ref|ZP_08249147.1| exodeoxyribonuclease I [Neisseria bacilliformis ATCC BAA-1200]
 gi|327461940|gb|EGF08270.1| exodeoxyribonuclease I [Neisseria bacilliformis ATCC BAA-1200]
          Length = 521

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 78/228 (34%), Gaps = 35/228 (15%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDE 68
           ++D ET G+    DR  +   +    D++       ++    N    SPE++ +  IT +
Sbjct: 57  IYDYETFGIHPARDRPAQFAGIRTDPDFNPVADPITLYCKQTNDYLPSPESVLITSITPQ 116

Query: 69  FLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP-----S 121
               K        +     F++ N   + +N  ++D         R   DP +      +
Sbjct: 117 ECNQKGVPEPEFAARICAEFSQPNTCIMGYNNIRYDDEITRHTFYRNFLDPYEYSYQNGN 176

Query: 122 RIIDTLSIARRKH---------PSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLL 167
              D L + R  H         P   N      L  L    GI   H   H AL D +  
Sbjct: 177 SRWDLLDVVRACHALRPEGIEWPRDENGLPVFRLEQLTAANGIE--HAHAHDALSDVYAT 234

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL--LKRDKPLF 213
             + +  ++   Q          RFF E +   P  ++  ++R  PL 
Sbjct: 235 --IALAKLIKQKQPRL------FRFFFENRGKAPLAAMIDIRRHTPLV 274


>gi|169769390|ref|XP_001819165.1| RNA exonuclease 4 [Aspergillus oryzae RIB40]
 gi|83767023|dbj|BAE57163.1| unnamed protein product [Aspergillus oryzae]
          Length = 314

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 56/167 (33%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G+    D    +  V +++++   + +  F+ P           + GI  
Sbjct: 119 KYVAMDCEMVGVGPNPDNDSALARVSIVNFNG-EQVYDSFVRPKEMVTDWR-THVSGILP 176

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +  S   +  +  +  + +    + H  + D+  +      +   P    R     
Sbjct: 177 KHMVEARSLEQVQKDVAEIMDGR--ILVGHALRNDLDAL------LLSHPKRDIRDTSKH 228

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I     H ++ D+     +Y +
Sbjct: 229 PPYRKIAGGGSPRLKMLASEFLGLDI-QSGAHSSVEDAKATMLLYRR 274


>gi|237807889|ref|YP_002892329.1| Exodeoxyribonuclease I [Tolumonas auensis DSM 9187]
 gi|237500150|gb|ACQ92743.1| Exodeoxyribonuclease I [Tolumonas auensis DSM 9187]
          Length = 506

 Score = 60.2 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 79/240 (32%), Gaps = 33/240 (13%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVF--LCPNGRKNSPEAL 60
           K +   +  D ET G+D   DR  +   +    D++       ++  + P+    +PEA 
Sbjct: 39  KTENTFLFHDYETFGIDPARDRPAQFAGIRTDADFNICGEPVVIYCQMSPDYLP-APEAC 97

Query: 61  KLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            + GIT        + +   F +I  +F             +N +FD  F      R   
Sbjct: 98  LITGITPQIANQNGICEADFFRTIHQQFSQ---PATCVLGYNNIRFDDEFTRYGFYRNFL 154

Query: 116 DPLDPSRI-----IDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRS 156
           DP   S        D L +AR  +                    L  L    GI   H +
Sbjct: 155 DPYAYSWQQGNSRWDLLDVARAFYALRPEGINWVYDAEGKPSFRLEKLSVANGIQ--HEN 212

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            H A+ D +    +   +     ++     T+  +   +    + NI  L     +F+ +
Sbjct: 213 AHDAMSDVYATIGLAKSLKQAQPRLFEYLSTHRGKNKLKNLIDIINIKPLVHVSGMFSAV 272


>gi|268577613|ref|XP_002643789.1| Hypothetical protein CBG02000 [Caenorhabditis briggsae]
 gi|187037741|emb|CAP23178.1| hypothetical protein CBG_02000 [Caenorhabditis briggsae AF16]
          Length = 299

 Score = 60.2 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 71/198 (35%), Gaps = 29/198 (14%)

Query: 10  IVFDIETTGLDSKND-----RIIEIGAVELLDYSKTNRT---FQVFLCPNGRK-NSPEAL 60
           ++ D E  G   K+D      II+     L    K  R    F  ++ P      +    
Sbjct: 13  LILDFE--GTCEKDDHDYPSEIIQFSVCVLNTRDKIIREDVSFNKYVRPVINPKLTDFCA 70

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQN------AEWIAHNAKFDVGFINAELQRIN 114
           +L GI  + + +  +F  ++++F  +  E +      A     +++ D+  +      +N
Sbjct: 71  ELTGIDQDTIDNARTFPEVYNQFCAWLKEHDFQEKRFAIVC--DSRQDMWRLAQYQFLLN 128

Query: 115 KDPLDP--SRIIDTLSIARRKHPSS------RNDL-NSLCKRYGITISHRSKHGALLDSH 165
           K P      + ++     R+    +         L   +   Y I       H A+ D  
Sbjct: 129 KQPFPTIFRQWVNLSLYYRQDLRMAQQQDAVHQSLIERMSAFYNIPNEG-QAHNAMDDCS 187

Query: 166 LLSDVYIKMMVGGSQINF 183
            L+ V  +++  G+ +N 
Sbjct: 188 FLAKVTKRILDNGTFVNI 205


>gi|332535945|ref|ZP_08411647.1| exodeoxyribonuclease I [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034679|gb|EGI71232.1| exodeoxyribonuclease I [Pseudoalteromonas haloplanktis ANT/505]
          Length = 481

 Score = 60.2 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 27/194 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G   + D+  +   +   LD +        +  P       PEA  + GIT +  
Sbjct: 15  DYETWGASPQKDKPSQFAGIRTDLDLNIIGEPLIEYCKPQADYLPHPEACLITGITPQVA 74

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGF---INAELQRINKDPLDP 120
           +K     +   ++    F+  N     +N+ +FD       F        +R  K+    
Sbjct: 75  MKKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYKNNNSR 134

Query: 121 SRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             IID +       P                L  L    GI   H + H AL D  + + 
Sbjct: 135 WDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIE--HAAAHDALSD--VTAT 190

Query: 170 VYIKMMVGGSQINF 183
           + +  ++   Q   
Sbjct: 191 IALAKLIKEKQPKL 204


>gi|295707016|ref|YP_003600091.1| exonuclease [Bacillus megaterium DSM 319]
 gi|294804675|gb|ADF41741.1| exonuclease (sporulation inhibitor KapD) [Bacillus megaterium DSM
           319]
          Length = 204

 Score = 60.2 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 60/181 (33%), Gaps = 21/181 (11%)

Query: 2   IRKNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-N 51
           + KN    +  D E T         G   +   IIE+G V + +    +R F  ++ P +
Sbjct: 1   MDKNSQ-YLFIDFEFTMPEYKGFPKGFFPE---IIEVGLVFVKNQEIIDR-FSSYVQPTH 55

Query: 52  GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
             K +        I    + +  +   +      +   +N+  I      D+  +    Q
Sbjct: 56  FTKLTERCKSFLHIEQNQVNEGITLEQLVQRLGMY---KNSTIITW-GNMDMKVLRQCCQ 111

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +         + ID     +R         L    + YG   + +  H AL D+    ++
Sbjct: 112 KNKVPFPFTGKEIDLSMEYKRFFGDQNQTGLWKAVQEYGKEGTGK-HHCALDDAMTTLNI 170

Query: 171 Y 171
           +
Sbjct: 171 F 171


>gi|255523821|ref|ZP_05390786.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|255512524|gb|EET88799.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
          Length = 998

 Score = 60.2 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 19/140 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  DIETT     ++++I I AV++ +       F   + P+      ++  L GIT + 
Sbjct: 11  IFLDIETT---HTDNKVIRICAVKIKNNEI--SRFSSLVNPDKLVELSDSQLLRGITQKE 65

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L    +   + ++   F   +    +     FDV F        N         +D + +
Sbjct: 66  LDSSCNLKEVLNKLQTFI--EQIPLV----CFDVTFKEKLFNIHN-------EFLDIIEL 112

Query: 130 ARRKHPSSRN-DLNSLCKRY 148
                P  R+ +L  L K++
Sbjct: 113 LAILFPELRSFELQYLLKKF 132


>gi|146283781|ref|YP_001173934.1| exonuclease [Pseudomonas stutzeri A1501]
 gi|145571986|gb|ABP81092.1| exonuclease [Pseudomonas stutzeri A1501]
          Length = 217

 Score = 60.2 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 66/170 (38%), Gaps = 10/170 (5%)

Query: 19  LDSKNDRI----IEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGITDEFLKDK 73
           L+ + D +    I IG +++    +    F  F+ P  R   +     L GI+   +   
Sbjct: 48  LEVQRDEMETIEIGIGLLDVQLEYRIVDHFGQFVRPLLRPTLTEFCTGLTGISQSDVDTA 107

Query: 74  PSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINKD-PLDPSRIIDTLSIA 130
             F+ +  +  ++   +N E     +   +D   +  +  R   D  LDP+R I+     
Sbjct: 108 KRFAEVQDQLGEWLRPRNTEGWRWCSWGDYDRNQLKEDAFRAGVDVLLDPARHINLKKCF 167

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +        L    +  G+ +   + H A+ D+  L+ +  ++++   Q
Sbjct: 168 WKIFACRALGLKCAVESMGL-LWEGAHHRAIDDARNLARL-AQLLLSARQ 215


>gi|330981526|gb|EGH79629.1| exonuclease I [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 476

 Score = 60.2 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 67/226 (29%), Gaps = 26/226 (11%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ +NDR +++  +    D ++      +    +      P A  + GIT   L
Sbjct: 9   DYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPAACMITGITPATL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +K        +      +        +N  +FD         R   DP           
Sbjct: 69  AEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              ID +  A    P               L  L    GI   H     AL D      +
Sbjct: 129 WDLIDVVRAAYALRPDGIVWPEQDGRVTLKLERLTAANGID--HGQAPDALSDVRAT--I 184

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            +  ++   Q          R  ++ ++ V  +  L      F+  
Sbjct: 185 ALARLIREKQPKLYDYLFALRSKQKVQEQVRLMQPLVHISGRFSAA 230


>gi|322500702|emb|CBZ35779.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 502

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 65/220 (29%), Gaps = 57/220 (25%)

Query: 10  IVFDIETT---GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D E T   G       IIE   V L     +    F  ++ P    K +    +L G
Sbjct: 224 LVCDFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFHRYVRPLRNPKLTAFCTELTG 283

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI------------AHN-------------- 98
           IT E +       ++ ++F D+   +                 +HN              
Sbjct: 284 ITQEMVDVADPLPTVVAQFQDWLKTEVYPLCRMWARHYGPNRLSHNLKSEQRRFVYDEHT 343

Query: 99  ------------------AKFDVGFINAELQ--RINKDPLDPS-RIIDTLSIARRKHPSS 137
                               +D+     E    R   D      R I+            
Sbjct: 344 DAAKANTSAEAMICMATDGPWDMRRFMHECSVLRDGVDFPPVCYRYINVRHSYSDHFKCR 403

Query: 138 RNDLNSLCKRYGITISHRSKHGALLD----SHLLSDVYIK 173
           +  L  + K+  ++   R +H  + D    + +L++++ +
Sbjct: 404 QAKLTHMLKKMSMSFEGR-RHSGIDDTRNIARVLAELFAR 442


>gi|296139064|ref|YP_003646307.1| exonuclease RNase T and DNA polymerase III [Tsukamurella
           paurometabola DSM 20162]
 gi|296027198|gb|ADG77968.1| Exonuclease RNase T and DNA polymerase III [Tsukamurella
           paurometabola DSM 20162]
          Length = 198

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 30/174 (17%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGR---KNSPEALK 61
             + +  D E TGLD  +DR+IEI A V   D +       + +  +        P    
Sbjct: 2   DDKLVWVDCEMTGLDLTSDRLIEIAALVTDGDLNILGEGVDLVIHVDDAALDAMPPVVQD 61

Query: 62  LH---GITDE------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           +H   G+TDE       +++     ++ +   +           ++   D  FI  E+  
Sbjct: 62  MHAKSGLTDEVRRSTVTVREA--EEAVLAYLREHIEPGTVPLAGNSIATDRRFIAQEMPE 119

Query: 113 INKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  D     R++D  SI    RR +P            +G        H AL D
Sbjct: 120 L--DGFLHYRMVDVSSIKELCRRWYPR---------IYFGQP-DKGLAHRALAD 161


>gi|299132766|ref|ZP_07025961.1| Exodeoxyribonuclease I [Afipia sp. 1NLS2]
 gi|298592903|gb|EFI53103.1| Exodeoxyribonuclease I [Afipia sp. 1NLS2]
          Length = 473

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 67/191 (35%), Gaps = 28/191 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCPNGRKNSPEALKLHGIT 66
            + FD ETTGL    D+I+   A+           F+    L P+   + P AL+ +G+ 
Sbjct: 6   FVFFDTETTGLKHGFDQIVHFAAIRTDANLNEIGRFEARSRLLPHVLPH-PAALRTNGLP 64

Query: 67  DEFLKDK--PSFSSIFSEFWD-FFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122
              L D   PS   +         +   + ++ +N+ +FD   +   L +        S 
Sbjct: 65  IGRLLDGSLPSHYDMVRSIRQRLLSWSPSIFLGYNSVRFDEEMLRHALFQTLHPAYLTSN 124

Query: 123 IIDTLSIARRK----------------HPSSRN--DLNSLCKRYGITISHRSKHGALLDS 164
             ++ +                      P  R+   L  L    G+  +    H AL D+
Sbjct: 125 HNNSRADVWGLVMAAAAVSPACLNVPIGPEGRSIFRLEQLALANGV--AQEQAHDALSDA 182

Query: 165 HLLSDVYIKMM 175
               ++  +++
Sbjct: 183 IATLEL-CRLV 192


>gi|320586601|gb|EFW99271.1| RNA exonuclease 4 [Grosmannia clavigera kw1407]
          Length = 382

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 60/173 (34%), Gaps = 22/173 (12%)

Query: 8   RKIVFDIETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHG 64
           + +  D E  G+  D  +D +  +  V+          +  ++    G++       + G
Sbjct: 182 KYVALDCEMVGVGADGHDDALARVSVVDFFGRQV----YDSYVQMQRGQRVVDWRTAVSG 237

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPS 121
           IT   L     F+ +           + +    + H+ + D+  ++            P 
Sbjct: 238 ITPRHLHQARPFAEVRDVVAGLLRGDDGKPRFLVGHDVRHDLRVLDVSH--------PPR 289

Query: 122 RIIDTLSIA--RRKHPSSRNDLNSLCK-RYGITISHRSKHGALLDSHLLSDVY 171
            I DT   +  ++     +  L  L +   G+ I  +  H ++ D+ +   ++
Sbjct: 290 LIRDTAKFSGFKQYGNGPKPALRVLARTLLGVEI-QQGAHSSVEDARVTMQLF 341


>gi|320162584|gb|EFW39483.1| three prime histone mRNA exonuclease [Capsaspora owczarzaki ATCC
           30864]
          Length = 897

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 9   KIVFDIETTG-----LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALK 61
            +V D E T        +    IIE    V      +   +++ ++ P      +P   +
Sbjct: 576 FVVIDYEATCEENASFSTYPHEIIEFPAVVVNARTGEIVHSWRSYVRPVLNPTLTPFCTQ 635

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE 89
           L GIT   +   P F  +F +F  F  +
Sbjct: 636 LTGITQSQVDASPVFEDVFEQFVVFLRD 663


>gi|238501860|ref|XP_002382164.1| exonuclease, putative [Aspergillus flavus NRRL3357]
 gi|220692401|gb|EED48748.1| exonuclease, putative [Aspergillus flavus NRRL3357]
          Length = 381

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 56/167 (33%), Gaps = 12/167 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G+    D    +  V +++++   + +  F+ P           + GI  
Sbjct: 186 KYVAMDCEMVGVGPNPDNDSALARVSIVNFNG-EQVYDSFVRPKEMVTDWR-THVSGILP 243

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +  S   +  +  +  + +    + H  + D+  +      +   P    R     
Sbjct: 244 KHMVEARSLEQVQKDVAEIMDGR--ILVGHALRNDLDAL------LLSHPKRDIRDTSKH 295

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L  +  G+ I     H ++ D+     +Y +
Sbjct: 296 PPYRKIAGGGSPRLKMLASEFLGLDI-QSGAHSSVEDAKATMLLYRR 341


>gi|311087440|gb|ADP67520.1| exonuclease I [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 505

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 76/210 (36%), Gaps = 28/210 (13%)

Query: 1   MIRKNKMR--KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNS 56
           MI+  K     + +D ET G+ +  D+  +   +   ++ +  +     +  P +     
Sbjct: 28  MIQFQKKPPTFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPD 87

Query: 57  PEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRIN 114
           P ++ +  IT ++  K+  +  +   + +D   + N   + +N   FD         R  
Sbjct: 88  PGSVLITHITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNF 147

Query: 115 KDPLDPSR--------IIDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHR 155
            DP + S         I++ L       P+  N            L+ L K   I   H 
Sbjct: 148 FDPYEWSWKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIV--HL 205

Query: 156 SKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           + H A+ D +   ++  K++       F F
Sbjct: 206 NAHNAVSDVYATIEI-AKLVKKKQPRLFDF 234


>gi|146092927|ref|XP_001466575.1| hypothetical protein [Leishmania infantum]
 gi|134070938|emb|CAM69614.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 502

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 65/220 (29%), Gaps = 57/220 (25%)

Query: 10  IVFDIETT---GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D E T   G       IIE   V L     +    F  ++ P    K +    +L G
Sbjct: 224 LVCDFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFHRYVRPLRNPKLTAFCTELTG 283

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI------------AHN-------------- 98
           IT E +       ++ ++F D+   +                 +HN              
Sbjct: 284 ITQEMVDVADPLPTVVAQFQDWLKTEVYPLCRMWARHYGPNRLSHNLKSEQRRFVYDEHT 343

Query: 99  ------------------AKFDVGFINAELQ--RINKDPLDPS-RIIDTLSIARRKHPSS 137
                               +D+     E    R   D      R I+            
Sbjct: 344 DAAKANTSAEAMICMATDGPWDMRRFMHECSVLRDGVDFPPVCYRYINVRHSYSDHFKCR 403

Query: 138 RNDLNSLCKRYGITISHRSKHGALLD----SHLLSDVYIK 173
           +  L  + K+  ++   R +H  + D    + +L++++ +
Sbjct: 404 QAKLTHMLKKMSMSFEGR-RHSGIDDTRNIARVLAELFAR 442


>gi|113970745|ref|YP_734538.1| exonuclease I [Shewanella sp. MR-4]
 gi|113885429|gb|ABI39481.1| Exodeoxyribonuclease I subunit C [Shewanella sp. MR-4]
          Length = 470

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 56/179 (31%), Gaps = 27/179 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK--NSPEALKLHGITDEF- 69
           D ET G     DR  +   +            + F C        SPEA+ + GIT +  
Sbjct: 13  DYETFGATPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITGITPQLA 72

Query: 70  -LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------D 119
            LK  P  +         F++ N     +N+ +FD         R   DP          
Sbjct: 73  NLKGLP-ETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNT 131

Query: 120 PSRIIDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLL 167
              IID +       P   +            L  L +  G  +SH   H A+ D +  
Sbjct: 132 RWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANG--LSHEKAHDAMSDVYAT 188


>gi|218659835|ref|ZP_03515765.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli
          IE4771]
          Length = 77

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
          M+ I  D ET   + +      +G +  ++  +  R  +  + P   + S   + +HGI 
Sbjct: 1  MKTIAIDFETA--NEQRGSACSVG-LAWIEEGRVTRVEERLIRPREMRFSGMNIAIHGIR 57

Query: 67 DEFLKDKPSFSSIFSEFWD 85
           E ++D P F  +  EF D
Sbjct: 58 PEDVEDAPEFPEVTDEFHD 76


>gi|171683579|ref|XP_001906732.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941749|emb|CAP67403.1| unnamed protein product [Podospora anserina S mat+]
          Length = 339

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 68/175 (38%), Gaps = 21/175 (12%)

Query: 4   KNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            ++ + +  D E  G      D    +  V + D+  T + +  ++     K +     +
Sbjct: 146 LDRTKYLAIDCEMVGFGPGGVDS--SLARVSITDFHGT-QIYDSYVL-QREKVTDWRTAV 201

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI  + ++D   FS + +E  +    +    + H+ K D+  +         D   P +
Sbjct: 202 SGIAPKHMRDARPFSEVQAEVAELLKGR--IVVGHDVKHDLKCL---------DLDHPMK 250

Query: 123 II-DTLSIA--RRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIK 173
           +I DT   +  ++     +  L +L K   G+ I     H ++ D+ +   ++ K
Sbjct: 251 MIRDTAKFSGFKKYGNGPKPALKALAKEILGLEIQTGQ-HSSIEDARVAMLLFRK 304


>gi|326680252|ref|XP_003201484.1| PREDICTED: apoptosis-enhancing nuclease-like [Danio rerio]
          Length = 338

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 66/189 (34%), Gaps = 21/189 (11%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEAL 60
           +R +  R +  D E  G      R  E+    ++DY       +  ++ P     +    
Sbjct: 128 LRIDHSRIVAMDCEMVGTGPGGRR-SEVARCSIVDYYGNVV--YDSYILPQD-PVTDYRT 183

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +  GI    L+    F    +E       +    + H    D+  +   +Q         
Sbjct: 184 RWSGIRSHHLRQAVPFEHAQNEILKIL--KGKIIVGHALYHDLNVLYISVQ------PHM 235

Query: 121 SRIIDTLSIARRKHPSSRN---DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKM 174
            R   +  + R+ + +++N    L  L ++     I +  R  H ++ D+    D+Y K+
Sbjct: 236 IRDTCSCVLLRQLYDANQNCNISLKKLAQKLLNRTIQVD-RQGHCSVEDALSALDLY-KL 293

Query: 175 MVGGSQINF 183
           +    + N 
Sbjct: 294 VEDQWENNI 302


>gi|326929461|ref|XP_003210882.1| PREDICTED: ERI1 exoribonuclease 2-like [Meleagris gallopavo]
          Length = 716

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 62/193 (32%), Gaps = 28/193 (14%)

Query: 13  DIETTG-LDSKNDR--IIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITD 67
           D E+T   D++  R  IIE    +      +    F  F+ P  +   S     L G+T 
Sbjct: 70  DFESTCWRDARQRRPEIIEFPAVLLNAATGRIEAEFHAFVQPQEQPVLSEFCTALTGVTQ 129

Query: 68  EFLKDKPSFSSIFSEFWDFF---------------------NEQNAEWIAHNAKFDVGFI 106
           + + +        S+F  +                        +   ++          +
Sbjct: 130 KQVDEGVPLHICLSQFLKWLQKIQKEKKFLFISETPSNAIPETKLCAFVTWTDWDLGVCL 189

Query: 107 NAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           + E +R   + P   +  ID  +  R  +      L+   +  G+    R  H  L DS 
Sbjct: 190 HYECKRKQLRKPDIFNSWIDLKATYRAFYNRKPKGLSGALQDLGLAFVGRE-HSGLDDSR 248

Query: 166 LLSDVYIKMMVGG 178
             + +  +++  G
Sbjct: 249 NTARLAWRLICDG 261


>gi|195122902|ref|XP_002005949.1| GI18816 [Drosophila mojavensis]
 gi|193911017|gb|EDW09884.1| GI18816 [Drosophila mojavensis]
          Length = 223

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 62/198 (31%), Gaps = 30/198 (15%)

Query: 10  IVFDIETTG------LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           I  D E T          +   IIE    +  L   K    F  ++ P    + S    +
Sbjct: 8   IAVDFEATCWEKQAPPQWREAEIIEFPAVLVNLKTGKIESEFHKYVMPIESPRLSTYCTE 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAHNAKFDV 103
           L GI  + +       +    F ++  ++                  N  ++     +D 
Sbjct: 68  LTGIEQKTVDTGVPLQTALMMFHEWLRKELRSRNLILPKTSKSNLLGNCAFVTW-TDWDF 126

Query: 104 GFINA--ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           G        ++  +     ++ +D  +I R  +     + +      G+    R  H  +
Sbjct: 127 GICLHKECTRKRMRKAPYFNQWVDVRAIYREWYKYRPCNFSDALSHVGLAFEGR-AHSGI 185

Query: 162 LDSHLLSDVYIKMMVGGS 179
            D+  L  +  KM+  G+
Sbjct: 186 DDAKNLGALMYKMVRDGA 203


>gi|126699035|ref|YP_001087932.1| putative exonuclease [Clostridium difficile 630]
 gi|115250472|emb|CAJ68296.1| putative helicase, DinG family [Clostridium difficile]
          Length = 1039

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 12/156 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIE +GLD  N  I+E+GAV++ D+     T++  +                +    
Sbjct: 12  VFLDIEVSGLDCLNSEILEVGAVKVKDWKI--YTYESLIKNKFEVPVEVFSVCKNLDKND 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L+       +     +F   +++  I H+      F    + ++       ++ ID + +
Sbjct: 70  LEIANEIELVEDRLVNFV--EDSFIICHDLSLKKKFFEYHMPKLK------NKFIDLIEL 121

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164
           A    P  +   L  L        + + ++ AL D+
Sbjct: 122 AVILEPYHKDYSLEYLKNTL-TNCNSKVENRALSDA 156


>gi|332678483|gb|AEE87612.1| Exodeoxyribonuclease I [Francisella cf. novicida Fx1]
          Length = 482

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 65/196 (33%), Gaps = 28/196 (14%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEALKL 62
           +    + +D+ET+G+++  D++++  A+           F  F+   P+    SP A   
Sbjct: 3   SNQTLLFYDLETSGINNSFDQVLQFAAIRTDFDFNEIERFNFFVKLNPDTTP-SPMATIT 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFIN-------------- 107
           H I+        +      +     N      I +N   FD  F+               
Sbjct: 62  HHISIAQANTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121

Query: 108 --AELQRINKDPLDPSRII---DTLSIARRKHPSSRN----DLNSLCKRYGITISHRSKH 158
                 R +  P+     +   + L+  +      +      L +L +   +  S    H
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEDGQEKTSLKLENLNQNNSL-YSGGRAH 180

Query: 159 GALLDSHLLSDVYIKM 174
            A+ D  +  ++  K+
Sbjct: 181 DAITDVIVTVELAKKL 196


>gi|2564085|gb|AAB81660.1| putative [Enterobacteria phage N15]
          Length = 114

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
          M +  K   ++ D ETTGL    +    I    +    +        + P  +   PE  
Sbjct: 13 MHKWLKSDYLLIDTETTGL---GEYAEIIEIAIINMRGEVL--LDTLVKPT-KPIPPEVT 66

Query: 61 KLHGITDEFLKDKPSFSSIFSEFW 84
          +++ IT+E +   P++  +F + W
Sbjct: 67 EINHITNEMVASAPAWCDVFPKCW 90


>gi|56460478|ref|YP_155759.1| exonuclease I [Idiomarina loihiensis L2TR]
 gi|56179488|gb|AAV82210.1| Exonuclease I [Idiomarina loihiensis L2TR]
          Length = 479

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 55/178 (30%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G +   DR  +   +    D++   R   ++  P       PEA  + GIT +  
Sbjct: 13  DYETWGANPLVDRPAQFAGLRTDTDFNVIGRPLTLYAQPTPDFLPNPEATLITGITPQLA 72

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            K     +       + F + N   I +N  +FD         R   DP + S       
Sbjct: 73  AKQGVGEAEFSKAIANEFQKPNTTIIGYNNIRFDDEVTRLLFYRNFYDPYEYSWQNGNSR 132

Query: 124 ---IDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLL 167
              ID +       P   N            L  L     I   H   H A+ D +  
Sbjct: 133 WDLIDVVRACFALRPDGINWPENSDGQPSLKLEHLSVANNIE--HGQAHDAMSDVYAT 188


>gi|114047972|ref|YP_738522.1| exonuclease I [Shewanella sp. MR-7]
 gi|113889414|gb|ABI43465.1| Exodeoxyribonuclease I subunit C [Shewanella sp. MR-7]
          Length = 470

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 56/179 (31%), Gaps = 27/179 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK--NSPEALKLHGITDEF- 69
           D ET G     DR  +   +            + F C        SPEA+ + GIT +  
Sbjct: 13  DYETFGATPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITGITPQLA 72

Query: 70  -LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------D 119
            LK  P  +         F++ N     +N+ +FD         R   DP          
Sbjct: 73  NLKGLP-ETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNT 131

Query: 120 PSRIIDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLL 167
              IID +       P   +            L  L +  G  +SH   H A+ D +  
Sbjct: 132 RWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANG--LSHEKAHDAMSDVYAT 188


>gi|182419685|ref|ZP_02950926.1| exonuclease family [Clostridium butyricum 5521]
 gi|237665882|ref|ZP_04525870.1| exonuclease family [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376422|gb|EDT74003.1| exonuclease family [Clostridium butyricum 5521]
 gi|237658829|gb|EEP56381.1| exonuclease family [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 309

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 22/190 (11%)

Query: 7   MRKIVFDIE-------------TTGLD---SKNDRIIEIGAVELLDYSKTNRTFQVFLCP 50
           M  IV D+E             T  L+      D +++IGAV+L +  K   +F+ ++ P
Sbjct: 1   MIFIVLDLEYNHIDNRNKLLSNTLHLNRPSYMTDEVLQIGAVKLDENLKYISSFKRYIKP 60

Query: 51  NG-RKNSPEALKLHGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFIN 107
                 +     L  I   ++K +   F     EF DF  E   + +     + D   +N
Sbjct: 61  QFLVTLNKRVQDLIQIDMNYIKTNGVKFKRAVYEFMDFIGENLKDVVIITWGYSDWIILN 120

Query: 108 AELQ--RINKDPLDPSRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
              +  +I    L+ +  ID   +   ++       L  + ++Y I+      H A  D+
Sbjct: 121 KNFEANKIKNINLNDAYYIDLQRVVMNKEGIKIDPSLKGIAEKYNISACRDKYHDAYYDA 180

Query: 165 HLLSDVYIKM 174
            +   +   +
Sbjct: 181 VITKSILQNI 190


>gi|209731072|gb|ACI66405.1| Oligoribonuclease, mitochondrial precursor [Salmo salar]
          Length = 207

 Score = 59.8 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 34/176 (19%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + R +  D+E TGLD + D+IIE+  +       T+    V         +  +  L G+
Sbjct: 11  RQRMVWVDLEMTGLDIEKDQIIEMACI------ITDSELNVLSEGPNLIINTTSELLDGM 64

Query: 66  TD------------EFLKD-KPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINA 108
            D            + ++D K S      EF  F  +     +     ++   D  F++ 
Sbjct: 65  DDWCKEHHGNSGLTQAVRDSKISLQQAEYEFLSFIRQHTPPGHCPLAGNSVHADKKFLDK 124

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            + +           + T+  + RR  P          + Y +    ++ H AL D
Sbjct: 125 YMPQFMHHLHYRIIDVSTIKELCRRWFP----------EEYKLAPQKKASHRALDD 170


>gi|261337692|ref|ZP_05965576.1| conserved hypothetical protein [Bifidobacterium gallicum DSM 20093]
 gi|270277133|gb|EFA22987.1| conserved hypothetical protein [Bifidobacterium gallicum DSM 20093]
          Length = 458

 Score = 59.8 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 80/240 (33%), Gaps = 49/240 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV----FLCPNGRK----------- 54
           +  DIETTG+ +  D II++G  EL++    +         +  P               
Sbjct: 225 VGVDIETTGVQAYRDYIIDVGF-ELMNLQSPSPDGHTQYAMYADPAYAPQHAYGQARLAF 283

Query: 55  ---------NSPEALKLHGITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAH 97
                    ++    +L GI    ++++          +        +   +    ++AH
Sbjct: 284 GVPRLAATLDNEFIRELTGI---DVRERGAAQYRPFDEWPQAQQGLLNVLMQH--PYVAH 338

Query: 98  NAKFDVGFINAELQRIN----------KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR 147
           NA F+  F    +               D L  SR  D  S+   +HP   N L +  +R
Sbjct: 339 NATFEHKFFMFNIAGYAEAYRDGHITIIDTLPMSRQWDAGSMPDDEHPYGDNRLEAYAQR 398

Query: 148 YG-ITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
            G +      +H  L D+H++ +     +    Q + G    +       K+  P  +  
Sbjct: 399 MGSLPTDMGERHLGLEDAHIMLEAMRTHLAQLKQAHEGPFAADGSSGVGGKRCRPRSARR 458


>gi|119486052|ref|ZP_01620114.1| Exonuclease [Lyngbya sp. PCC 8106]
 gi|119456827|gb|EAW37955.1| Exonuclease [Lyngbya sp. PCC 8106]
          Length = 191

 Score = 59.8 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 61/182 (33%), Gaps = 21/182 (11%)

Query: 10  IVFDIETTGLDSKN-----DRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKN-SPEALKL 62
           ++ D+E T  D          IIEIGAV +     T    FQ F+ P      +    +L
Sbjct: 10  LIIDLEATCCDQHTILRSEMEIIEIGAVMVETKKLTSVNEFQTFIKPIRHPILTKFCQQL 69

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV--------GFINAELQRIN 114
             IT   ++  P +        ++ ++ +   +   +  D            +     I 
Sbjct: 70  TSITQAQVEQAPHYPEAIKNLKNWLSQYSDSHLIWGSWGDYDRRQFDQDSQFHHVSFPIG 129

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              ++  ++  T    +      R  +    K   I +   + H  + D+  ++ +   +
Sbjct: 130 YPHINLKKMFSTSQGLK-----GRYGMADALKLANIPLEG-THHRGIDDTRNIAKLMPYI 183

Query: 175 MV 176
           + 
Sbjct: 184 LG 185


>gi|118397287|ref|XP_001030977.1| exonuclease family protein [Tetrahymena thermophila]
 gi|89285297|gb|EAR83314.1| exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 1047

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 69/178 (38%), Gaps = 16/178 (8%)

Query: 11  VFDIETTGLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDE 68
           V D E    +     IIE    V  L   K   TF  ++ P   +K S    KL GI  E
Sbjct: 203 VIDFEC---NQPGSEIIEFPITVVDLKQRKVVDTFHSYVRPTKIKKLSNFIKKLTGIKQE 259

Query: 69  FLKDKPSFSSIFSEFWDFFN--EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +    S  +I +    F +  +Q+   I ++   D  F++ E++  NK     ++ + +
Sbjct: 260 DVDASESIETIITRVEAFLSKYQQSKAAILYDCANDAKFLSNEIK--NKQLNITNKFLLS 317

Query: 127 LSIARRKHP-----SSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               R   P       +N  L+   +   ++     KH    DS  ++ V ++M+   
Sbjct: 318 YINLRNVFPINLTGGIKNISLSHALEVLDMSFEG-QKHTGRDDSINIARVCMEMINHQ 374


>gi|293374135|ref|ZP_06620469.1| exonuclease [Turicibacter sanguinis PC909]
 gi|325837434|ref|ZP_08166416.1| exonuclease [Turicibacter sp. HGF1]
 gi|292647238|gb|EFF65214.1| exonuclease [Turicibacter sanguinis PC909]
 gi|325490966|gb|EGC93264.1| exonuclease [Turicibacter sp. HGF1]
          Length = 365

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 65/176 (36%), Gaps = 13/176 (7%)

Query: 9   KIVFDIE--TTGLDSKND----RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALK 61
               D+E   +G + +       II+ G +           F  ++ P      S +  +
Sbjct: 168 YAFLDLEFSMSGPEYRGTKFIPEIIQFGLIIADAEGNLVEKFSAYVKPTIFPQISGKTQE 227

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLD 119
              ITD  +    ++   +    +     N  +I        GFI      IN  K   +
Sbjct: 228 FLKITDASVAYGITYLEFYGYIKEVIARYNPLFIV--WGVSDGFILENSYVINGVKPLFE 285

Query: 120 PSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +++ID   I R+ +       L +  + Y I ++    H A++D+ +L +++ K 
Sbjct: 286 TNQLIDLQRIHRQYYQIGQDIGLYNAIRSYEI-LTGTQIHDAIVDALVLHNIFYKF 340


>gi|262198353|ref|YP_003269562.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262081700|gb|ACY17669.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 187

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 68/180 (37%), Gaps = 34/180 (18%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  KN +  I  D+E TGLD + +RIIEI  +   +  +          P+   + PE+L
Sbjct: 1   MTAKNPL--IWMDLEMTGLDPERERIIEIAVLITDNALEIVAE-----GPDLVVHQPESL 53

Query: 61  ---------KLH---GITD----EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
                    K H   G+T+      + +  + + + +   +   +  A    ++   D  
Sbjct: 54  LEQMDDWNRKHHGASGLTERVRASQVSEAEAEAQVLAFLREHVKQGAAPLAGNSIHQDRR 113

Query: 105 FINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   + +I+      +  + ++  + +R +P            Y    S    H AL D
Sbjct: 114 FLRRYMPQIDDYLHYRNVDVSSVKELVKRWYP----------AVYSKRPSKVGTHRALDD 163


>gi|329663381|ref|NP_001192506.1| ERI1 exoribonuclease 2 [Bos taurus]
 gi|297490163|ref|XP_002698031.1| PREDICTED: ERI1 exoribonuclease family member 2 [Bos taurus]
 gi|296473339|gb|DAA15454.1| ERI1 exoribonuclease family member 2 [Bos taurus]
          Length = 689

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 61/197 (30%), Gaps = 29/197 (14%)

Query: 10  IVFDIETT----GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           I+ D E+T    G   ++  IIE    +      +    F  ++ P      S   ++L 
Sbjct: 38  IIIDFESTCWNDGKRHRSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPILSEFCVELT 97

Query: 64  GITDEFLKDKPSFSSIFSEFWDF------------------FNEQNAEWIAHNAKFDVG- 104
           GI    + +        S+F  +                   +    +  A     D   
Sbjct: 98  GIKQAQVDEGVPLKICLSQFCKWIQKIQQQKKIIFATTVSDISTSEVKLCAFVTWSDWDL 157

Query: 105 --FINAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +  E +R     P+  +  ID     +  +      L+   +  G+    R   G L
Sbjct: 158 GVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFYRRKPKGLSGALQEVGMQFLGREHFG-L 216

Query: 162 LDSHLLSDVYIKMMVGG 178
            DS   + +  KM+  G
Sbjct: 217 DDSRNTALLAWKMIRDG 233


>gi|300310766|ref|YP_003774858.1| oligoribonuclease [Herbaspirillum seropedicae SmR1]
 gi|300073551|gb|ADJ62950.1| oligoribonuclease (3'->5' exoribonuclease) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 189

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 60/179 (33%), Gaps = 33/179 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKN 55
           +R N+M  I  D+E TGLD   DRIIE+  V        L         Q     +G   
Sbjct: 9   VRPNEMNLIWVDMEMTGLDPDKDRIIEVAVVVTDAELNVLGEGPVLAIHQSDELLDGMDA 68

Query: 56  SPEALKLHG----ITD---EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
             +    HG    I       + +  +   I      +     +    ++   D  F+  
Sbjct: 69  WNKGT--HGRSGLIDRVKASTVTEADAEKQIIEFLKQYVPAGKSPMCGNSICQDRRFMVR 126

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
            + ++  +     R +D             + L  LCKR+   I+     R  H AL D
Sbjct: 127 GMPKL--EEFFHYRNLDV------------STLKELCKRWKPEIATGFKKRQMHTALAD 171


>gi|150389968|ref|YP_001320017.1| exonuclease-like protein [Alkaliphilus metalliredigens QYMF]
 gi|149949830|gb|ABR48358.1| exonuclease-like protein [Alkaliphilus metalliredigens QYMF]
          Length = 342

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 31/143 (21%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N  +  + DIETTGL      +I IG +  +D     + F     P       EA +
Sbjct: 20  MILNSQKYCIVDIETTGLSKIYHHVILIGILYPVDDHLVLKQF-FAEDPKEEALILEAFE 78

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120
                              +EF DF        I +N   FD  F+    ++ N    + 
Sbjct: 79  -------------------AEFKDF-----DTLITYNGVTFDYPFLIGRFKKHNVPFFNL 114

Query: 121 S-RIIDTLSIARRKHPSSRNDLN 142
           + + ID L   RR     ++ L+
Sbjct: 115 AIQHIDILQHLRRY----KHHLD 133


>gi|255656372|ref|ZP_05401781.1| putative exonuclease [Clostridium difficile QCD-23m63]
          Length = 342

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 7  MRKIVFDIETTGLDSKNDR------IIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEA 59
          M+++  D E    +SK+ R      II IGAV   + +K    F+  + P +  +  P  
Sbjct: 1  MKRVYIDFEMNMPNSKSKRAVFNSDIIAIGAVMYDEKTKNIDKFKSLIRPVSNEELYPHI 60

Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFN 88
           +L  I+ E LK  PS+  +  +F  +  
Sbjct: 61 QELTHISSEELKSAPSYEEVMRKFKKWLG 89


>gi|262375498|ref|ZP_06068731.1| DNA polymerase III, epsilon subunit [Acinetobacter lwoffii SH145]
 gi|262309752|gb|EEY90882.1| DNA polymerase III, epsilon subunit [Acinetobacter lwoffii SH145]
          Length = 232

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 96/230 (41%), Gaps = 34/230 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVF--LCPNGRKNSPEALKL 62
           M+ I+ D ET    + N + IEI    VE++++  +    ++F  L       S  A+ +
Sbjct: 1   MQAIILDTET---HTLNGQPIEIAYAPVEIVEHKISLDKSRLFDQLYSCDEAISFAAMAV 57

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H I +  L+ +P     ++ F     ++    I HN  +DV  I    ++   D     +
Sbjct: 58  HHILESDLEGQP----HYTTFR--LPDETVYMIGHNIDYDVRAI----EKCGVDT-SKIK 106

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISH-------RSKHGALLDSHLLSDVYIKM 174
            I TL++ARR  P +  +++++L   Y IT          R  H A +D  L +++ + +
Sbjct: 107 AICTLALARRVWPDAEAHNISALI--YMITKGSERAREMIRKAHRADMDIILTANILMHI 164

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPN-ISLLKRDKPLFTRITKEELDE 223
           +      +    + ++ F   E   +P  I+  K        +  + +  
Sbjct: 165 VH-----HLKINSMQELFDASEDARIPRTINFGKHRGTAIAELPTDYVQW 209


>gi|262369568|ref|ZP_06062896.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262315636|gb|EEY96675.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 234

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 87/233 (37%), Gaps = 40/233 (17%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVF--LCPNGRKNSPEALKL 62
           M+ I+ D ET    + N + IEI    +E+ +   +    QVF  L       S  A+ +
Sbjct: 3   MQAIILDTET---HTLNGQPIEIAYAPIEITNGKLSLDKSQVFDQLYTVDEPISFAAMAV 59

Query: 63  HGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           H I +  L  KP   +F             +    I HN  +D+  I    ++   D   
Sbjct: 60  HHILESDLVGKPHYTTFK---------LPAETQYIIGHNIDYDIRAI----EKCGVDT-S 105

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHR-------SKHGALLDSHLLSDVY 171
             + I TL++AR   P +  +++++L   Y I+             H A +D  L +++ 
Sbjct: 106 RIKAICTLALARLVWPDAEAHNISALI--YMISKGSEKAREMIKKAHRADMDIILTANIL 163

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPN-ISLLKRDKPLFTRITKEELDE 223
           + ++           + E  F   E   +P  I+  K        +  + +  
Sbjct: 164 MHVVH-----QLKINSMEQLFAVSEDARIPRVINFGKHRGTAIADLPADYIQW 211


>gi|149239622|ref|XP_001525687.1| RNA exonuclease 4 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146451180|gb|EDK45436.1| RNA exonuclease 4 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 279

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 56/174 (32%), Gaps = 17/174 (9%)

Query: 3   RKNKMRKIVFDIETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           R    + +  D E  G+  D +++ +  +  V    +   +     ++ P  R       
Sbjct: 107 RLEPGKYLAMDCEFVGIGKDGEHNALARVSIVNFFGHVIMDE----YVRPKARVTD-FRT 161

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            + G+    LKD   F  +  +      ++    + H    D+  +     R        
Sbjct: 162 SISGVAPWHLKDATPFDDVQKKVSALIKDR--ILVGHAIANDLECLQLSHPR------RM 213

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIK 173
            R   + S  R+        L  L + +  I I     H ++ D+     ++ +
Sbjct: 214 LRDTVSCSEYRKVAGGRSPSLRKLMQHFFKINIQDGE-HSSVEDARATMLLFRR 266


>gi|17430149|emb|CAD16834.1| putative exodeoxyribonucleaseIprotein [Ralstonia solanacearum
           GMI1000]
          Length = 489

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 50/178 (28%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFL 70
           D ET G   + DR  +   +    + ++     ++F  P N     P +  + GIT +  
Sbjct: 21  DYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPMSCLITGITPQQC 80

Query: 71  K-DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           +                        + +N+ +FD         R   DP           
Sbjct: 81  RRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRHLFWRNLIDPYAREWQNTCGR 140

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L +  G+   H + H AL D    
Sbjct: 141 WDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANGLQ--HEAAHDALSDVRAT 196


>gi|294650071|ref|ZP_06727456.1| DNA exonuclease X [Acinetobacter haemolyticus ATCC 19194]
 gi|292824039|gb|EFF82857.1| DNA exonuclease X [Acinetobacter haemolyticus ATCC 19194]
          Length = 230

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 34/230 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVF--LCPNGRKNSPEALKL 62
           M+ I+ D ET    + N   IEI    +E+     +    ++F  L   G+  S  A+ +
Sbjct: 1   MQTIILDTET---HTLNGLPIEIAYAPIEIESGKLSLDKKKIFDQLYQVGQPISFAAMAV 57

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H I +  L D+P     ++EF      +    I HN  +D+  I     R   +     +
Sbjct: 58  HHILESDLVDRP----FYNEFQ--LPTETTYIIGHNVDYDIAAI----ARCGVET-SHLK 106

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISH-------RSKHGALLDSHLLSDVYIKM 174
            I TL++AR   P +  +++++L   Y I+          +  H A  D  L +++ + +
Sbjct: 107 PICTLALARHVWPDAEAHNISALI--YLISKGSDKAREMLKGAHRADADIILTANILMHI 164

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDE 223
           +          +  E  +   E+  +P +I+  K        +  + +  
Sbjct: 165 IH-----QLDIQNIEQLYIASEEARIPKSITFGKHKGTTIQDLPTDYVQW 209


>gi|119775108|ref|YP_927848.1| exonuclease I [Shewanella amazonensis SB2B]
 gi|119767608|gb|ABM00179.1| Exodeoxyribonuclease I subunit C [Shewanella amazonensis SB2B]
          Length = 470

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 56/179 (31%), Gaps = 27/179 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNR--TFQVFLCPNGRKNSPEALKLHGITDEF 69
           D ET G     DR  +   V   LD +  +   TF   L P+    +PEA+ + GIT + 
Sbjct: 13  DYETFGASPAKDRPAQFAGVRTDLDLNIIDEPVTFYCRLSPDYLP-APEAILITGITPQL 71

Query: 70  L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL--------D 119
             +     +         F+  N     +N+ +FD         R   DP          
Sbjct: 72  ANRQGLPETEFMGRIQAIFSRPNTCVAGYNSLRFDDEVSRYGFYRNFIDPYAREWQQGNS 131

Query: 120 PSRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              IID +       P                L  L    G  + H   H A+ D +  
Sbjct: 132 RWDIIDLVRACYALRPEGINWPEKEDGSPSFKLEHLTAANG--LGHDKAHDAMSDVYAT 188


>gi|256827080|ref|YP_003151039.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Cryptobacterium curtum DSM 15641]
 gi|256583223|gb|ACU94357.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Cryptobacterium curtum DSM 15641]
          Length = 325

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 69/197 (35%), Gaps = 52/197 (26%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVFLCPNGRK-----NSPEA--- 59
           +  D+ETTG      RII +G   V+L +  K          P G          +    
Sbjct: 135 VGVDLETTGRAPDRGRIINVGWEYVKLAEGEK----------PFGACAAWCGLPAQYEET 184

Query: 60  ----LKLHGITDEFLKDKPSFSS-------IFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
                ++HGIT + + D+P F         +      F       ++AHNA F+  ++  
Sbjct: 185 GVPLTEIHGITWDDIADRPQFRDDSDLQASLLQALEAF------PYLAHNAAFEDAWLLL 238

Query: 109 ELQRI-NKDPLDPSRIIDTLSIARRKHPSSRN--------DLNSLCKRYG-ITISHRSKH 158
            L              +DT  I R+  P  R          L S  +R   ++     +H
Sbjct: 239 NLNGYAEGRKAGRIVPVDTRDICRQLDPEVRYLPHESRPASLESWARRRKTLSADEDERH 298

Query: 159 GALLDSHL-----LSDV 170
             L D+ L     L+++
Sbjct: 299 LGLDDTDLMLRTVLAEL 315


>gi|297665148|ref|XP_002810969.1| PREDICTED: LOW QUALITY PROTEIN: ERI1 exoribonuclease 3-like [Pongo
           abelii]
          Length = 261

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 64/185 (34%), Gaps = 23/185 (12%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK 54
           M+     R    +V D E T    +     IIE   ++L     +   T  +++ P    
Sbjct: 57  MVSFPPQRYHYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTXHMYVQPVVHP 116

Query: 55  -NSPEALKLHGITDEFLK--DKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG 104
             +P   +L GI    ++   +PS   +     ++  ++        + ++     +D+ 
Sbjct: 117 QLTPFCTELTGIIQAMVEMDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLK 175

Query: 105 -FINAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGA 160
             +  + Q +     D  +    L  A         +N L  + K  G+++ H    H  
Sbjct: 176 VMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSG 233

Query: 161 LLDSH 165
           + D  
Sbjct: 234 IDDCK 238


>gi|257471605|ref|ZP_05635604.1| exonuclease I [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
          Length = 505

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 76/210 (36%), Gaps = 28/210 (13%)

Query: 1   MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNS 56
           MI+  K     + +D ET G+ +  D+  +   +   ++ +  +     +  P +     
Sbjct: 28  MIQFQKKTPNFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPD 87

Query: 57  PEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRIN 114
           P ++ +  IT ++  K+  +  +   + +D   + N   + +N   FD         R  
Sbjct: 88  PGSVLITHITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNF 147

Query: 115 KDPLDPSR--------IIDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHR 155
            DP + S         I++ L       P+  N            L+ L K   I   H 
Sbjct: 148 FDPYEWSWKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIV--HL 205

Query: 156 SKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           + H A+ D +   ++  K++       F F
Sbjct: 206 NAHNAVSDVYATIEI-AKLVKKKQPRLFDF 234


>gi|15239167|ref|NP_196173.1| SDN2 (SMALL RNA DEGRADING NUCLEASE 2); exonuclease/ nucleic acid
           binding [Arabidopsis thaliana]
 gi|75333751|sp|Q9FFG1|SDN2_ARATH RecName: Full=Small RNA degrading nuclease 2
 gi|10178131|dbj|BAB11543.1| unnamed protein product [Arabidopsis thaliana]
 gi|26451907|dbj|BAC43046.1| unknown protein [Arabidopsis thaliana]
 gi|32441256|gb|AAP81803.1| At5g05540 [Arabidopsis thaliana]
 gi|332003502|gb|AED90885.1| small RNA degrading nuclease 2 [Arabidopsis thaliana]
          Length = 466

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 66/188 (35%), Gaps = 12/188 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   K+  I  D E    +  ++ ++ + AV+  D       F   + PN          
Sbjct: 135 MEPTKIEMIAIDCEMVLCEDGSEAVVRVAAVD-RDLKVILDEF---VKPNQPVVDYRTF- 189

Query: 62  LHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           + G+T + L+    S   I  +   F + ++   +  +   D+  +  +  R+    L  
Sbjct: 190 ITGLTAQDLEKATISVVDIQEKLLMFIS-EDTILVGQSLNHDLKVLKVDHARVIDTSLVF 248

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCK-RYGITISHRS-KHGALLDSHLLSDVYIKMMVGG 178
               D     RR     R  LN LCK   G  +      H  + D+     + + ++  G
Sbjct: 249 KYNYD---GTRRPLRLKRPSLNYLCKCILGYEVQKEGVPHNCVHDAEAAMKLVLAILDNG 305

Query: 179 SQINFGFK 186
           ++ +    
Sbjct: 306 AETSVPLS 313


>gi|227546364|ref|ZP_03976413.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|227213345|gb|EEI81217.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Bifidobacterium longum subsp. infantis ATCC 55813]
          Length = 493

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 48/198 (24%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVF---------------------LC 49
            DIETTG+D   D II++G     +   +     + +                     + 
Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323

Query: 50  PNGRKN-SPEALKLHGITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNA 99
           P      +    KL GI    ++ +           +    +       +Q   ++AHNA
Sbjct: 324 PENAALGNALIAKLTGI---DVRGRSSEAGYRLFDEWPQAQAGLLARLTQQ--PYVAHNA 378

Query: 100 KFDVGFIN------AELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
            F+  +        AE  R  +    D L  SR  D  ++   +HP   N L++  KR G
Sbjct: 379 TFEHSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQG 438

Query: 150 -ITISHRSKHGALLDSHL 166
            +  +H  +H  L DSH+
Sbjct: 439 ALDSAHNERHLGLEDSHI 456


>gi|23335363|ref|ZP_00120600.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Bifidobacterium longum DJO10A]
 gi|189439806|ref|YP_001954887.1| DNA polymerase III subunit epsilon [Bifidobacterium longum DJO10A]
 gi|189428241|gb|ACD98389.1| DNA polymerase III epsilon subunit [Bifidobacterium longum DJO10A]
 gi|291517273|emb|CBK70889.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Bifidobacterium longum subsp. longum F8]
          Length = 493

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 48/198 (24%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVF---------------------LC 49
            DIETTG+D   D II++G     +   +     + +                     + 
Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323

Query: 50  PNGRKN-SPEALKLHGITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNA 99
           P      +    KL GI    ++ +           +    +       +Q   ++AHNA
Sbjct: 324 PENAALGNALIAKLTGI---DVRGRSSEAGYRLFDEWPQAQAGLLARLTQQ--PYVAHNA 378

Query: 100 KFDVGFIN------AELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
            F+  +        AE  R  +    D L  SR  D  ++   +HP   N L++  KR G
Sbjct: 379 TFEHSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQG 438

Query: 150 -ITISHRSKHGALLDSHL 166
            +  +H  +H  L DSH+
Sbjct: 439 ALDSAHNERHLGLEDSHI 456


>gi|312133212|ref|YP_004000551.1| dnaq [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482559|ref|ZP_07941574.1| dnaQ protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|311772413|gb|ADQ01901.1| DnaQ [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915981|gb|EFV37388.1| dnaQ protein [Bifidobacterium sp. 12_1_47BFAA]
          Length = 493

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 48/198 (24%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVF---------------------LC 49
            DIETTG+D   D II++G     +   +     + +                     + 
Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323

Query: 50  PNGRKN-SPEALKLHGITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNA 99
           P      +    KL GI    ++ +           +    +       +Q   ++AHNA
Sbjct: 324 PENAALGNALIAKLTGI---DVRGRSSEAGYRLFDEWPQAQAGLLARLTQQ--PYVAHNA 378

Query: 100 KFDVGFIN------AELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
            F+  +        AE  R  +    D L  SR  D  ++   +HP   N L++  KR G
Sbjct: 379 TFEHSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQG 438

Query: 150 -ITISHRSKHGALLDSHL 166
            +  +H  +H  L DSH+
Sbjct: 439 ALDSAHNERHLGLEDSHI 456


>gi|311086276|gb|ADP66358.1| exonuclease I [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
          Length = 505

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 76/210 (36%), Gaps = 28/210 (13%)

Query: 1   MIRKNKMR--KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNS 56
           MI+  K     + +D ET G+ +  D+  +   +   ++ +  +     +  P +     
Sbjct: 28  MIQFQKKTPTFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPD 87

Query: 57  PEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRIN 114
           P ++ +  IT ++  K+  +  +   + +D   + N   + +N   FD         R  
Sbjct: 88  PGSVLITHITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNF 147

Query: 115 KDPLDPSR--------IIDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHR 155
            DP + S         I++ L       P+  N            L+ L K   I   H 
Sbjct: 148 FDPYEWSWKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIV--HL 205

Query: 156 SKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           + H A+ D +   ++  K++       F F
Sbjct: 206 NAHNAVSDVYATIEI-AKLVKKKQPRLFDF 234


>gi|322690617|ref|YP_004220187.1| hypothetical protein BLLJ_0426 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320455473|dbj|BAJ66095.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 493

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 48/198 (24%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVF---------------------LC 49
            DIETTG+D   D II++G     +   +     + +                     + 
Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323

Query: 50  PNGRKN-SPEALKLHGITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNA 99
           P      +    KL GI    ++ +           +    +       +Q   ++AHNA
Sbjct: 324 PENAALGNALIAKLTGI---DVRGRSSEAGYRLFDEWPQAQAGLLARLTQQ--PYVAHNA 378

Query: 100 KFDVGFIN------AELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
            F+  +        AE  R  +    D L  SR  D  ++   +HP   N L++  KR G
Sbjct: 379 TFEHSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQG 438

Query: 150 -ITISHRSKHGALLDSHL 166
            +  +H  +H  L DSH+
Sbjct: 439 ALDSAHNERHLGLEDSHI 456


>gi|152986809|ref|YP_001349107.1| hypothetical protein PSPA7_3753 [Pseudomonas aeruginosa PA7]
 gi|150961967|gb|ABR83992.1| hypothetical protein PSPA7_3753 [Pseudomonas aeruginosa PA7]
          Length = 183

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 15/175 (8%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGA--VELLDYSKTNRTFQVFLCPNGRKNSPEALK- 61
            +V D+E T    G   +   IIEIGA  V   D  + +  FQ F+ P  R       + 
Sbjct: 4   WLVIDLEATTAEGGWPLEEMEIIEIGATLVAAADARELD-HFQRFVRPLRRPLLTHFCRD 62

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  I+   +     F +++  F  +  +         +  D        Q   +  L   
Sbjct: 63  LTHISQASVDGAAQFDAVWEAFERWLAQHRPRLAGWASWGDYDR-RQLEQEWRQHRLSSQ 121

Query: 122 RIIDTLSIARRKHPSSR-----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    +++    R       LN+  +  G++     +H AL D+   + + 
Sbjct: 122 LSEVPHVNLKQRFGEVRQLPRPVGLNAALQLAGMSF-QGQQHRALEDARNTARLL 175


>gi|148652873|ref|YP_001279966.1| exonuclease, RNase T and DNA polymerase III [Psychrobacter sp.
           PRwf-1]
 gi|148571957|gb|ABQ94016.1| Exodeoxyribonuclease X [Psychrobacter sp. PRwf-1]
          Length = 237

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 65/202 (32%), Gaps = 19/202 (9%)

Query: 7   MRKIVFDIETTGL-DSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           M   + D ETTGL D    +    I A+                 P  +  S  ++    
Sbjct: 1   MTTYILDTETTGLVDPHMTEAAYSIIAINNAKIEVIQAPRSKRFNP-LKPISLGSMATSH 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I DE +  +P      +EF           + HN  +D+  +       N       ++I
Sbjct: 60  ICDEDVAHEPP----HTEFR--LPNSVEYLVGHNIDYDMAVLK------NAGVTHTPKLI 107

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMMVGGSQ 180
            T +++    P+   + L SL   +   ++       H A+ D +    V   ++   + 
Sbjct: 108 CTKAMSSYLLPTLESHKLVSLLYHFHRQVAREQAKHAHAAIYDIYFTQLVLGSLIELANS 167

Query: 181 INFGFKTNEDRFFKEEKKTVPN 202
                   E  +   E   +P 
Sbjct: 168 QGHNITDVESLYQFSEMARIPT 189


>gi|116494067|ref|YP_805801.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei ATCC 334]
 gi|191637384|ref|YP_001986550.1| DNA polymerase III, alpha subunit [Lactobacillus casei BL23]
 gi|227533296|ref|ZP_03963345.1| DNA polymerase III, epsilon subunit like 3'-5' exonuclease
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|116104217|gb|ABJ69359.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei ATCC 334]
 gi|190711686|emb|CAQ65692.1| DNA polymerase III, alpha subunit [Lactobacillus casei BL23]
 gi|227189092|gb|EEI69159.1| DNA polymerase III, epsilon subunit like 3'-5' exonuclease
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|327381428|gb|AEA52904.1| DNA polymerase III alpha subunit [Lactobacillus casei LC2W]
 gi|327384594|gb|AEA56068.1| DNA polymerase III alpha subunit [Lactobacillus casei BD-II]
          Length = 172

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 62/172 (36%), Gaps = 17/172 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D E    +S ++R I+I AV + D       F  F+      +  +  +LH I   
Sbjct: 4   YVIMDTE---FNSTSNRAIQISAVRIRDGLHIADQFNRFI-----PSPDKFDQLHIIRTS 55

Query: 69  FLKDK-----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            ++       PS      ++  +      + +  + + D G I    ++ +       + 
Sbjct: 56  NMRYSDYLALPSLQQTVRDYVAWMRTT-IDIVGWSIEGDAGRIRETFKKGSHGIPKNWKF 114

Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ID   I  +++  +    L  L    GI ++    H AL D      V   +
Sbjct: 115 IDIADIVEKRYSFNATPPLQGLANVLGIPVN--RTHNALDDCLRTFGVIKAL 164


>gi|225351800|ref|ZP_03742823.1| hypothetical protein BIFPSEUDO_03397 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158144|gb|EEG71427.1| hypothetical protein BIFPSEUDO_03397 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 509

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 70/195 (35%), Gaps = 43/195 (22%)

Query: 12  FDIETTGLDSKNDRIIEIG-----------AVELLDYSKTNRTFQV----------FLCP 50
            DIETTG D     II+ G           A E   Y      ++           F  P
Sbjct: 281 IDIETTGTDPARVYIIDAGFEFMNMISPRPAGEPAGYRYEQDYYETGDAYGQARLSFGVP 340

Query: 51  NGRKN--SPEALKLHGITDEFLKDKP--SFSSIFSE----FWDFFNEQNAEWIAHNAKFD 102
                  +P  L L GI            F   + E          +Q   ++AHNA+F+
Sbjct: 341 TQNALLGNPLILDLTGIDVRDRASADFRLFDE-WPEAQIGLLQRLEQQ--PYVAHNARFE 397

Query: 103 VGFINAELQRINKDPLDPS-RIIDTLSIARR---------KHPSSRNDLNSLCKRYG-IT 151
             F    +    +     +  IIDTL ++RR         +HP   N L++  KR G + 
Sbjct: 398 HSFFMLNVAGYAESYRAGNITIIDTLPMSRRWDEGSIPDDEHPHGNNTLDAYAKRQGALD 457

Query: 152 ISHRSKHGALLDSHL 166
            S   +H  L D+H+
Sbjct: 458 ASKSERHLGLEDTHI 472


>gi|255068356|ref|ZP_05320211.1| oligoribonuclease [Neisseria sicca ATCC 29256]
 gi|255047405|gb|EET42869.1| oligoribonuclease [Neisseria sicca ATCC 29256]
          Length = 185

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 64/177 (36%), Gaps = 29/177 (16%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK----NSP 57
           + +N       D+E TGLD + +RIIE+  +            +V++     +       
Sbjct: 1   MTQNASNLCWLDMEMTGLDPERERIIEVAMIITDSDLNVLAQSEVYVVHQSDELLDGMDE 60

Query: 58  EALKLHGIT--DEFLKD-KPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAEL 110
                HG T   + +++ + + + +  +  DF      E+      ++   D  F+   +
Sbjct: 61  WNTATHGRTGLTQRVRESQLTEAEVEQKLLDFIAQWIPEKATPMCGNSIHQDRRFMVKYM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
            R+  +     R +D             + L  L KR+   ++     R  H AL D
Sbjct: 121 PRL--EAYFHYRNLDV------------STLKELAKRWNPPVAKGVVKRGSHQALDD 163


>gi|325114145|emb|CBZ49703.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 496

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 83/235 (35%), Gaps = 52/235 (22%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK------------------ 54
           D+ETTGL  ++  I +IG V  L     +  +    CP  R                   
Sbjct: 257 DLETTGLCIQSCEITQIGCVPRLFR---DGRWHYVNCPVLRDAEAHLWGEPHVFSAYIRI 313

Query: 55  ---NSPEALKLHGITDEFL-KDKPSFSSIF-------SEFWDFFN-EQNAEWIAHN-AKF 101
                 +   L GIT   L K      +          +  +  + +    ++AH+ + F
Sbjct: 314 HSWIPKKVRDLTGITKALLNKKGIPLETALLKWAGWAQKIANSLDYDVPIWFVAHSGSSF 373

Query: 102 DVGFINAE-----------LQRINKDPLDPSRIIDTLSIARRK-HPSSR---NDLNSLCK 146
           D+  +               +      +     +DTL+++R    P+ R   + L+ L  
Sbjct: 374 DIPVLLRHETSTRTALKMFSRGCFFRHVGCEYTVDTLTLSRALPWPNVREQSHSLSLLYA 433

Query: 147 RY-GITISHRSKHGALLDSHLLSDVYIK--MMVGGSQINFGFKTNEDRFFKEEKK 198
           +  G +     +H A+ DS  L+++  K   +    ++  G K  E+  ++   K
Sbjct: 434 QLTGRSRDRNDEHNAVGDSIALAELMGKEPFLSAWQRMKVGRKLCEEFEYQRRLK 488


>gi|296453663|ref|YP_003660806.1| hypothetical protein BLJ_0499 [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183094|gb|ADG99975.1| hypothetical protein BLJ_0499 [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 472

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 48/198 (24%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVF---------------------LC 49
            DIETTG+D   D II++G     +   +     + +                     + 
Sbjct: 244 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 303

Query: 50  PNGRKN-SPEALKLHGITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNA 99
           P      +    KL GI    ++ +           +    +       +Q   ++AHNA
Sbjct: 304 PENAALGNALIAKLTGI---DVRGRSSEAGYRLFDEWPQAQAGLLARLTQQ--PYVAHNA 358

Query: 100 KFDVGFIN------AELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
            F+  +        AE  R  +    D L  SR  D  ++   +HP   N L++  KR G
Sbjct: 359 TFEHSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQG 418

Query: 150 -ITISHRSKHGALLDSHL 166
            +  +H  +H  L DSH+
Sbjct: 419 ALDSAHNERHLGLEDSHI 436


>gi|239622366|ref|ZP_04665397.1| DNA polymerase III [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239514363|gb|EEQ54230.1| DNA polymerase III [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 493

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 48/198 (24%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVF---------------------LC 49
            DIETTG+D   D II++G     +   +     + +                     + 
Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323

Query: 50  PNGRKN-SPEALKLHGITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNA 99
           P      +    KL GI    ++ +           +    +       +Q   ++AHNA
Sbjct: 324 PENAALGNALIAKLTGI---DVRGRSSEAGYRLFDEWPQAQAGLLARLTQQ--PYVAHNA 378

Query: 100 KFDVGFIN------AELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
            F+  +        AE  R  +    D L  SR  D  ++   +HP   N L++  KR G
Sbjct: 379 TFEHSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQG 438

Query: 150 -ITISHRSKHGALLDSHL 166
            +  +H  +H  L DSH+
Sbjct: 439 ALDSAHNERHLGLEDSHI 456


>gi|161621731|ref|NP_521246.2| exonuclease I [Ralstonia solanacearum GMI1000]
          Length = 477

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 50/178 (28%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFL 70
           D ET G   + DR  +   +    + ++     ++F  P N     P +  + GIT +  
Sbjct: 9   DYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPMSCLITGITPQQC 68

Query: 71  K-DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           +                        + +N+ +FD         R   DP           
Sbjct: 69  RRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRHLFWRNLIDPYAREWQNTCGR 128

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +D +       P                L  L +  G+   H + H AL D    
Sbjct: 129 WDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANGLQ--HEAAHDALSDVRAT 184


>gi|320335855|ref|YP_004172566.1| Exonuclease RNase T and DNA polymerase III [Deinococcus
           maricopensis DSM 21211]
 gi|319757144|gb|ADV68901.1| Exonuclease RNase T and DNA polymerase III [Deinococcus
           maricopensis DSM 21211]
          Length = 183

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 8/175 (4%)

Query: 11  VFDIETT---GLDS--KNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           V D+E T   G     + + IIE+G  V  L   +     +V + P   + S     L G
Sbjct: 7   VIDVEATCWDGPTPPGQTNEIIEVGICVVDLRTLERVDRRRVMVRPGRSEISAFCTDLTG 66

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT   + D  +F+   +      +  +  W +    +D      +           +R  
Sbjct: 67  ITARDVADGVTFTEACAILRRELHADSRPWASW-GDYDRKQFERQCVATGTPYPFSARHT 125

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           +  +     H   R  +    +  G+ +  R  H    D+  ++ + + ++ GG 
Sbjct: 126 NAKAQYALAHTLRRMGMAEALQHAGLPLEGR-HHRGEDDAWNIAALILGLLRGGR 179


>gi|115687329|ref|XP_785830.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115954064|ref|XP_001191658.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 225

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 66/185 (35%), Gaps = 14/185 (7%)

Query: 3   RKNKMRKIV-FDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R N+ R++V  D E  GL  K  R   +   ++           +  ++ P+    +   
Sbjct: 27  RGNRHREVVAIDCEMVGLGPKG-RFTALARCSIIHHSGEII---YDSYVKPD-EPITDYR 81

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            K  GI    + +   F+    +  +   ++    I H    D   +       +     
Sbjct: 82  TKWSGIRPRNMVNAIPFNEAQEQVKNLLKDK--IVIGHAVWNDFQALKFSHPPNDVRDTS 139

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             +++  +  ++   P     L SL K   GI +  R +H ++ D+    D+Y K++   
Sbjct: 140 KCKLLAEIYGSKCT-PGQHLGLKSLAKYLLGIDV-QRGEHSSVEDARAAMDLY-KLVEDK 196

Query: 179 SQINF 183
            +   
Sbjct: 197 WEEEL 201


>gi|255745763|ref|ZP_05419711.1| hypothetical protein VCH_002127 [Vibrio cholera CIRS 101]
 gi|262158958|ref|ZP_06030070.1| hypothetical protein VIG_002197 [Vibrio cholerae INDRE 91/1]
 gi|262169319|ref|ZP_06037011.1| hypothetical protein VIJ_002539 [Vibrio cholerae RC27]
 gi|262192375|ref|ZP_06050528.1| hypothetical protein VIH_002769 [Vibrio cholerae CT 5369-93]
 gi|255736838|gb|EET92235.1| hypothetical protein VCH_002127 [Vibrio cholera CIRS 101]
 gi|262022132|gb|EEY40841.1| hypothetical protein VIJ_002539 [Vibrio cholerae RC27]
 gi|262029143|gb|EEY47795.1| hypothetical protein VIG_002197 [Vibrio cholerae INDRE 91/1]
 gi|262031728|gb|EEY50313.1| hypothetical protein VIH_002769 [Vibrio cholerae CT 5369-93]
          Length = 156

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 10/162 (6%)

Query: 16  TTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL-KDK 73
           TTG       IIEIG  E+ L   +  +  Q F+ P   + S    +L GIT   + K  
Sbjct: 3   TTG------EIIEIGLAEIDLAAGEIVKRAQYFVKPEKDEISLFCAELTGITPRKIEKQG 56

Query: 74  PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK 133
              + +       F   N  + +   + D+  +N   ++    P      + TL   + +
Sbjct: 57  RPLAEVIQSMVKNFGGSNKIYASW-GRDDLILLNECREKGLSVPFQEFLNLATLYRIQHR 115

Query: 134 HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               R    +  +  GI    R  H   +D++ L+ + + M+
Sbjct: 116 LKDKRIGHRAAQESQGIEWEGRQ-HSGYVDAYNLAKLALTML 156


>gi|23465751|ref|NP_696354.1| hypothetical protein BL1185 [Bifidobacterium longum NCC2705]
 gi|23326437|gb|AAN24990.1| hypothetical protein BL1185 [Bifidobacterium longum NCC2705]
          Length = 493

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 48/198 (24%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVF---------------------LC 49
            DIETTG+D   D II++G     +   +     + +                     + 
Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323

Query: 50  PNGRKN-SPEALKLHGITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNA 99
           P      +    KL GI    ++ +           +    +       +Q   ++AHNA
Sbjct: 324 PENAALGNALIAKLTGI---DVRGRSSEAGYRLFDEWPQAQAGLLARLTQQ--PYVAHNA 378

Query: 100 KFDVGFIN------AELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
            F+  +        AE  R  +    D L  SR  D  ++   +HP   N L++  KR G
Sbjct: 379 TFEHSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQG 438

Query: 150 -ITISHRSKHGALLDSHL 166
            +  +H  +H  L DSH+
Sbjct: 439 ALDSAHNERHLGLEDSHI 456


>gi|312883579|ref|ZP_07743304.1| hypothetical protein VIBC2010_12209 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368802|gb|EFP96329.1| hypothetical protein VIBC2010_12209 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 176

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 69/181 (38%), Gaps = 14/181 (7%)

Query: 4   KNKMRKIVFDIETTGLD----SKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE 58
            N  R + FD+E    +     +   IIEIG  E+ L   +  +  Q ++ P   + S  
Sbjct: 1   MNHNRVVCFDLEMCCWNENGIGRTGEIIEIGLAEIDLTSGEIVKRAQYYVKPEADEVSQF 60

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
             +L GI+   + K   S   + +     F   N  + +     D   +  E  +   + 
Sbjct: 61  CTELTGISPRKIEKQGRSLGEVLNSMKKNFGGSNKIYAS--WGRDDVILQNECAKKGLEM 118

Query: 117 PLDPSRIIDTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           P      + TL   + +    R  + +    K  GIT   R  H   +D++ L+ + + M
Sbjct: 119 PFREFINLATLFRIQNRLKDKRVGHKVAQEMK--GITWEGRQ-HSGYVDAYNLAKLALVM 175

Query: 175 M 175
           +
Sbjct: 176 L 176


>gi|311086852|gb|ADP66933.1| exonuclease I [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
          Length = 412

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 76/210 (36%), Gaps = 28/210 (13%)

Query: 1   MIRKNKMR--KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNS 56
           MI+  K     + +D ET G+ +  D+  +   +   ++ +  +     +  P +     
Sbjct: 28  MIQFQKKTPTFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPD 87

Query: 57  PEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRIN 114
           P ++ +  IT ++  K+  +  +   + +D   + N   + +N   FD         R  
Sbjct: 88  PGSVLITHITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNF 147

Query: 115 KDPLDPSR--------IIDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHR 155
            DP + S         I++ L       P+  N            L+ L K   I   H 
Sbjct: 148 FDPYEWSWKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIV--HL 205

Query: 156 SKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           + H A+ D +   ++  K++       F F
Sbjct: 206 NAHNAVSDVYATIEI-AKLVKKKQPRLFDF 234


>gi|208779832|ref|ZP_03247176.1| exonuclease family protein [Francisella novicida FTG]
 gi|208744287|gb|EDZ90587.1| exonuclease family protein [Francisella novicida FTG]
          Length = 482

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 26/195 (13%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEALKL 62
           +    + +D+ET+G+++  D++++  A+           F  F+   P+    SP A   
Sbjct: 3   SNQTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTP-SPMATIT 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP- 120
           H I+        +      +     N      I +N   FD  F+     +    P    
Sbjct: 62  HHISIAQANTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121

Query: 121 ----SRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT---------------ISHRSKHG 159
                   D   I    +      LN        G                  S    H 
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHD 181

Query: 160 ALLDSHLLSDVYIKM 174
           A+ D  +  ++  K+
Sbjct: 182 AITDVIVTVELAKKL 196


>gi|187924944|ref|YP_001896586.1| oligoribonuclease [Burkholderia phytofirmans PsJN]
 gi|187716138|gb|ACD17362.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
           phytofirmans PsJN]
          Length = 203

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 31/176 (17%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAV-------ELLDYSK--TNRTFQVFLCPNGRK 54
           ++ M  +  D+E TGL+  +DRIIEI  V        +++      +++ +        K
Sbjct: 15  RSDMNLVWLDMEMTGLEPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETL-----AK 69

Query: 55  NSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFIN 107
                   H   G+ D       S +    +  DF +       +    ++   D  F+ 
Sbjct: 70  MDQWNQNTHGRSGLIDRVKASTVSEADAAEQIRDFLSVFVPPGKSPMCGNSICQDRRFMA 129

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  + +     +  + TL    R+   +                 R+ H AL D
Sbjct: 130 RWMPDLERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 175


>gi|127512540|ref|YP_001093737.1| exonuclease I [Shewanella loihica PV-4]
 gi|126637835|gb|ABO23478.1| Exodeoxyribonuclease I subunit C [Shewanella loihica PV-4]
          Length = 482

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 64/191 (33%), Gaps = 28/191 (14%)

Query: 2   IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPE 58
           +  N +  I + D ET G +   DR  +   +   +D +  +     +    +    SPE
Sbjct: 13  MPANNLPSIFWHDYETFGANPAKDRPSQFAGIRTDMDLNIISEPVTFYCKQASDYLPSPE 72

Query: 59  ALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           A+ + GIT +   LK  P  +   +     F++ N     +N+ +FD         R   
Sbjct: 73  AILITGITPQLANLKGMP-EAEFMARINSEFSQPNTCVAGYNSLRFDDEVTRYGFYRNFF 131

Query: 116 DPL--------DPSRIIDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRS 156
           DP             IID +       P                L  L +     +SH  
Sbjct: 132 DPYAREWQNGNSRWDIIDLVRACYALRPEGINWPEKEDGSPSFKLEHLTQA--NNLSHDK 189

Query: 157 KHGALLDSHLL 167
            H A+ D +  
Sbjct: 190 AHDAMSDVYAT 200


>gi|194172953|ref|YP_002003597.1| hypothetical protein rv5_gp095 [Escherichia phage rv5]
 gi|114795991|gb|ABI79165.1| conserved hypothetical protein [Escherichia phage rv5]
          Length = 327

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 22/163 (13%)

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS 137
            +  + W + ++ +   +AHN+ FD G+ N         P  P + +DTL + ++    +
Sbjct: 134 ELIQDLWYYLDKCDVA-VAHNSGFDCGWANQRFAFHGLPPTSPYKEVDTLKMIKKAFRLN 192

Query: 138 RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-------------GSQINFG 184
            N L   CK + +       H          +++IK + G             G  ++  
Sbjct: 193 ANTLEYACKYFQLARQKLIDH--------TFEMWIKCVHGDLEAFKQMREYNVGDILSLE 244

Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
                 R F ++   +      +  K    R   E L E +  
Sbjct: 245 GLYLLARPFAKQHPNMSLYYQDEEPKVRCPRCGGEHLHEEEAL 287


>gi|254373125|ref|ZP_04988614.1| exodeoxyribonuclease I [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570852|gb|EDN36506.1| exodeoxyribonuclease I [Francisella novicida GA99-3549]
          Length = 482

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 26/195 (13%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEALKL 62
           +    + +D+ET+G+++  D++++  A+           F  F+   P+    SP A   
Sbjct: 3   SNQTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTP-SPMATIT 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP- 120
           H I+        +      +     N      I +N   FD  F+     +    P    
Sbjct: 62  HHISIAQANTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121

Query: 121 ----SRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT---------------ISHRSKHG 159
                   D   I    +      LN        G                  S    H 
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHD 181

Query: 160 ALLDSHLLSDVYIKM 174
           A+ D  +  ++  K+
Sbjct: 182 AITDVIVTVELAKKL 196


>gi|268554023|ref|XP_002634999.1| C. briggsae CBR-ERI-1 protein [Caenorhabditis briggsae]
 gi|187028567|emb|CAP32323.1| CBR-ERI-1 protein [Caenorhabditis briggsae AF16]
          Length = 578

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 25/187 (13%)

Query: 10  IVFDIETTGLDSKND---RIIEIGAVELLDYS-KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           I  D E T ++   D    IIE+ AV +     K    F+ ++ P    K S   ++   
Sbjct: 143 IAIDFECTCVEIIYDYPHEIIELPAVLIDVREMKIISEFRSYVRPVKNPKLSDFCIQFTK 202

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNA-------EWIAHNAKFDVGFINAELQRINKDP 117
           I  E + + P F     +   +  +           ++         F+  +    N   
Sbjct: 203 IAQETVDEAPYFREALEKLMQWMRKFGLGEKNTRFAFVTDGPHDMWKFMQFQCILSNIRM 262

Query: 118 LDPSRIIDTLSIARRKHPSSRNDL---------NSLCKRYGITISHRSKHGALLDSHLLS 168
               R        ++      N L          ++ +R  +T    +KH  L D+  ++
Sbjct: 263 PHMFRNF---INIKKTFKEKFNGLMKGNGKSGIENMLERLDLTFIG-NKHSGLDDARNIA 318

Query: 169 DVYIKMM 175
            + I+MM
Sbjct: 319 QIAIQMM 325


>gi|282164255|ref|YP_003356640.1| hypothetical protein MCP_1585 [Methanocella paludicola SANAE]
 gi|282156569|dbj|BAI61657.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 198

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 60/184 (32%), Gaps = 31/184 (16%)

Query: 10  IVFDIETTGL------DSKN-DRIIEIGAVELLDYSK------TNRTFQVFLCPNGRKNS 56
            V D ETTGL      +    D  I IGAV              +  + +   P+  K  
Sbjct: 5   CVIDTETTGLGKFDRANPGRVDYPISIGAVVADVNVVKKQVRCVDGMYSLIRIPDTSKAD 64

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWD-FFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            + + +HGI  E L   P+ + +  +    F   +     A N  FD  F++   +    
Sbjct: 65  -DTMLIHGILPEELDSAPAPTQVCLDLKALFAKYEAMPVGAWNYHFDKHFVDVLFRMARM 123

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR-----SKHGALLDSHLLSDV 170
            P           + R   P   + L    + +   ++H        H A  D      V
Sbjct: 124 LPPS--------LVWREMMPERYSRLERYVQNH---VTHDGVLRLEAHNAFNDCIRTLAV 172

Query: 171 YIKM 174
           +  +
Sbjct: 173 HAAL 176


>gi|257095291|ref|YP_003168932.1| Exonuclease RNase T and DNA polymerase III [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047815|gb|ACV37003.1| Exonuclease RNase T and DNA polymerase III [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 236

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 62/193 (32%), Gaps = 24/193 (12%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64
           + R +V D+ETT +    DR++ +GA+ ++D        FQ  L          +     
Sbjct: 43  RTRYVVVDVETTVIGGDADRLVSLGALAVVDGLIDFKDVFQACLANESADGEAAS----- 97

Query: 65  ITDEFLKDKPSFS----SIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLD 119
                   +P       +       F      A  I+ +A F    ++  +       L 
Sbjct: 98  ------DGRPQIETARIAAVDAMLAFLRFAGKAPLISFHASFAAQQVDRAMGECLGVAL- 150

Query: 120 PSRIIDTLSIARRKHP----SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               ID   +           S+  L+     + I    R  H  + D++  + +    +
Sbjct: 151 RQPWIDLAWVMSDLFRDVGDDSQGGLDGWLAHFDIESIKR--HDVVSDAYATAKLLQITI 208

Query: 176 VGGSQINFGFKTN 188
              ++  F   ++
Sbjct: 209 ARAARKGFDSPSS 221


>gi|195162323|ref|XP_002022005.1| GL14409 [Drosophila persimilis]
 gi|194103903|gb|EDW25946.1| GL14409 [Drosophila persimilis]
          Length = 223

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 71/216 (32%), Gaps = 28/216 (12%)

Query: 10  IVFDIETTGLDSKND------RIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           I  D E T  +++         IIE    +  L        F  ++ P    + S     
Sbjct: 8   ISVDFEATCWENQPAQQFRLSEIIEFPAILVNLKTGMVEAEFHKYVMPVESPQLSEYCTS 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAH-NAKFD 102
           L GI  + ++      +  + F ++  ++                  N  ++   N  F 
Sbjct: 68  LTGIQQKTVEAGVPLQTALNSFIEWLKKELSARNLVLPKMSMTNPQGNCFFVTWTNWDFG 127

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           +       ++  + P   ++ ID  +I ++ +       N+  +   +T   R+  G + 
Sbjct: 128 ICLAKECARKNIRKPTCFNQWIDARAIYKKWYKYCPFSFNNALEHVRLTFQGRAYSG-ID 186

Query: 163 DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
           D+  L  +  KM   G+  +        +   E + 
Sbjct: 187 DAKNLGILICKMFRDGAPFSITKDLTPHKELNENRG 222


>gi|118497767|ref|YP_898817.1| exodeoxyribonuclease I [Francisella tularensis subsp. novicida
           U112]
 gi|194323739|ref|ZP_03057515.1| exonuclease family protein [Francisella tularensis subsp. novicida
           FTE]
 gi|118423673|gb|ABK90063.1| exodeoxyribonuclease I [Francisella novicida U112]
 gi|194322103|gb|EDX19585.1| exonuclease family protein [Francisella tularensis subsp. novicida
           FTE]
          Length = 482

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 26/195 (13%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEALKL 62
           +    + +D+ET+G+++  D++++  A+           F  F+   P+    SP A   
Sbjct: 3   SNQTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTP-SPMATIT 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP- 120
           H I+        +      +     N      I +N   FD  F+     +    P    
Sbjct: 62  HHISIAQANTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121

Query: 121 ----SRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT---------------ISHRSKHG 159
                   D   I    +      LN        G                  S    H 
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHD 181

Query: 160 ALLDSHLLSDVYIKM 174
           A+ D  +  ++  K+
Sbjct: 182 AITDVIVTVELAKKL 196


>gi|261364839|ref|ZP_05977722.1| oligoribonuclease [Neisseria mucosa ATCC 25996]
 gi|288566880|gb|EFC88440.1| oligoribonuclease [Neisseria mucosa ATCC 25996]
          Length = 182

 Score = 59.1 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 29/177 (16%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK----NSP 57
           + +N       D+E TGLD + +RIIE+  +            +V++     +       
Sbjct: 1   MTQNANNLCWLDMEMTGLDPERERIIEVAMIITDSDLNVLAQSEVYVVHQSDELLDGMDE 60

Query: 58  EALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAEL 110
                H   G+T    + + + + +  +  DF      E+      ++   D  F+   +
Sbjct: 61  WNTATHGRTGLTRRVRESQLTEAEVEQKLLDFIAQWIPEKATPMCGNSIHQDRRFMVKYM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
            R+  +     R +D             + L  L KR+   ++     R  H AL D
Sbjct: 121 PRL--EAYFHYRNLDV------------STLKELAKRWNPPVAKGVVKRGSHQALDD 163


>gi|196250879|ref|ZP_03149564.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           G11MC16]
 gi|196209608|gb|EDY04382.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           G11MC16]
          Length = 207

 Score = 59.1 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 55/174 (31%), Gaps = 17/174 (9%)

Query: 9   KIVFDIE-------TT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPE 58
            +  D E       TT  G   +   IIE+G V ++D    N+ F  ++ P      +  
Sbjct: 7   YLFLDFEFTMPETKTTPNGFSPE---IIEVGLVAVVDEQIVNQ-FSSYVKPLRFPQLTDR 62

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                 IT E +    SF  + S    +  E+    +      D+  +    Q    +  
Sbjct: 63  CKSFLNITQEQIDSGMSFYELVSLLRQYDRERPTTVVTW-GNMDMKVLRENCQSARVEFP 121

Query: 119 DPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                 D     +R   +     L    + YG        H AL D+     ++
Sbjct: 122 FTGEHRDLAMEYKRFFGNKNQTALRKAVQEYGNE-GIGKAHCALDDAFTAYTIF 174


>gi|134302180|ref|YP_001122149.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418]
 gi|134049957|gb|ABO47028.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418]
          Length = 482

 Score = 59.1 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 26/195 (13%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEALKL 62
           +    + +D+ET+G+++  D++++  A+           F  F+   P+    SP A   
Sbjct: 3   SNQTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTP-SPMATIT 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP- 120
           H I+        +      +     N      I +N   FD  F+     +    P    
Sbjct: 62  HHISIAQANTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121

Query: 121 ----SRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT---------------ISHRSKHG 159
                   D   I    +      LN        G                  S    H 
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHD 181

Query: 160 ALLDSHLLSDVYIKM 174
           A+ D  +  ++  K+
Sbjct: 182 AITDVIVTVELAKKL 196


>gi|195162325|ref|XP_002022006.1| GL14410 [Drosophila persimilis]
 gi|195162327|ref|XP_002022007.1| GL14411 [Drosophila persimilis]
 gi|195162329|ref|XP_002022008.1| GL14412 [Drosophila persimilis]
 gi|194103904|gb|EDW25947.1| GL14410 [Drosophila persimilis]
 gi|194103905|gb|EDW25948.1| GL14411 [Drosophila persimilis]
 gi|194103906|gb|EDW25949.1| GL14412 [Drosophila persimilis]
          Length = 223

 Score = 59.1 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 71/216 (32%), Gaps = 28/216 (12%)

Query: 10  IVFDIETTGLDSKND------RIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           I  D E T  +++         IIE    +  L        F  ++ P    + S     
Sbjct: 8   ISVDFEATCWENQPAQQFRLSEIIEFPAILVNLKTGMVEAEFHKYVMPVESPQLSEYCTS 67

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAH-NAKFD 102
           L GI  + ++      +  + F ++  ++                  N  ++   N  F 
Sbjct: 68  LTGIQQKTVEAGVPLQTALNSFIEWLKKELSARNLVLPKMSMTNPQGNCFFVTWTNWDFG 127

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           +       ++  + P   ++ ID  +I ++ +       N+  +   +T   R+  G + 
Sbjct: 128 ICLAKECARKNIRKPTCFNQWIDARAIYKKWYKYCPFSFNNALEHVRLTFQGRAYSG-ID 186

Query: 163 DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
           D+  L  +  KM   G+  +        +   E + 
Sbjct: 187 DAKNLGSLICKMFRDGAPFSITKDLTPHKELNENRG 222


>gi|154340886|ref|XP_001566396.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063719|emb|CAM39904.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 508

 Score = 59.1 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 70/220 (31%), Gaps = 57/220 (25%)

Query: 10  IVFDIETT---GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D E T   G       IIE   V L     +    F  ++ P    K +    +L G
Sbjct: 230 LVCDFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFHRYVRPLRNPKLTAFCTELTG 289

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI------------AHNAKFDVGFI------ 106
           IT E +        + ++F D+   +                 +HN K +          
Sbjct: 290 ITQEMVDLADPLPMVVAQFQDWLRTEVYPLCRMWARHYGPNHLSHNLKSEQRRFVYDELT 349

Query: 107 ---------NAELQRINKDPLDPSRIIDTLSIARR---------KHPSSRND-------- 140
                     A L      P D  R +   S+ R          ++ + R+         
Sbjct: 350 DAAKANVSAEAMLCMATDGPWDMRRFMHECSVLRDGVDFPPVCYRYINIRHSYSHHFKCR 409

Query: 141 ---LNSLCKRYGITISHRSKHGALLD----SHLLSDVYIK 173
              L  + K+  ++   R +H  + D    + +L++++ +
Sbjct: 410 QVRLTHMLKQMSMSFEGR-RHSGIDDTRNIARVLAELFAR 448


>gi|167581087|ref|ZP_02373961.1| oligoribonuclease [Burkholderia thailandensis TXDOH]
          Length = 201

 Score = 59.1 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 31/176 (17%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-------LDYSK--TNRTFQVFLCPNGRK 54
           +N++  +  D+E TGL+   DRIIEI  V         ++      +++ +        K
Sbjct: 15  RNELNLVWLDMEMTGLNPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETL-----AK 69

Query: 55  NSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFIN 107
                   H   G+ D       + +   ++   F  +      +    ++   D  F+ 
Sbjct: 70  MDDWNKNTHGRSGLIDRVRASSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMA 129

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  + +     +  + TL    R+   +                 R+ H AL D
Sbjct: 130 RWMPELERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 175


>gi|251789913|ref|YP_003004634.1| exonuclease I [Dickeya zeae Ech1591]
 gi|247538534|gb|ACT07155.1| Exodeoxyribonuclease I [Dickeya zeae Ech1591]
          Length = 476

 Score = 59.1 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 62/196 (31%), Gaps = 27/196 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDE 68
           V D ET G     DR  +   V   L+++       ++  P +     P+A+ + GIT +
Sbjct: 12  VHDYETFGKHPAKDRPAQFAGVRTDLNFNVIGEPVVIYCQPADDYLPDPQAVMITGITPQ 71

Query: 69  FLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--- 123
             +      +       + F+      + +N  +FD         R   DP   S     
Sbjct: 72  IAQSRGIRETEFARHIHEAFSVPGTCIMGYNNIRFDDEVSRNLFYRNFIDPYAYSWQNGN 131

Query: 124 -----IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                +D L       P                L  L +  G+   H   H A+ D +  
Sbjct: 132 SRWDLLDMLRACYALRPDGIVWPENDDGFPSFRLEHLTRANGVE--HTQAHDAMSDVYAT 189

Query: 168 SDVYIKMMVGGSQINF 183
             + +  ++  +Q   
Sbjct: 190 --IAMARLLKQAQPKL 203


>gi|228982489|ref|ZP_04142748.1| Exonuclease [Bacillus thuringiensis Bt407]
 gi|228776672|gb|EEM24980.1| Exonuclease [Bacillus thuringiensis Bt407]
          Length = 186

 Score = 59.1 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 62/182 (34%), Gaps = 10/182 (5%)

Query: 10  IVFDIETT----GLDSKN--DRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRK-NSPEALK 61
           ++ D+E+T    G + +N    IIEIGAV    +  +    +Q F+ P      S   L 
Sbjct: 5   LIIDLESTCFKRGAEPRNFFSEIIEIGAVVLHTETFEIVEEYQTFVKPVLFPTLSEYCLH 64

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  I  + +    S     +E    +N+ +  + +    +D        +R   +     
Sbjct: 65  LTTIRQDEVDYGKSIKDAMNEIASLYNKYDCVFASW-GFYDKKQFKQVCERFGVNYPFGH 123

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
             I                +    K + + +     H  + D+  +S +   M+  G   
Sbjct: 124 LHISLKHQHGTWTRQRPMGMERALKMHHLPLEG-IHHRGIDDARNISKIASHMIHSGWNH 182

Query: 182 NF 183
            F
Sbjct: 183 EF 184


>gi|322488733|emb|CBZ23980.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 502

 Score = 59.1 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 57/220 (25%)

Query: 10  IVFDIETT---GLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D E T   G       IIE   V L     +    F  ++ P    K +    +L G
Sbjct: 224 LVCDFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFHRYVRPLRNPKLTAFCTELTG 283

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI------------AHNAKFDVGFI------ 106
           IT E +       ++ ++F D+   +                 +HN K +          
Sbjct: 284 ITQEMVDVADPLPTVVAQFQDWLKTEVYPLCRMWARHYGPNRLSHNLKSEQRRFVYDEHT 343

Query: 107 ---------NAELQRINKDPLDPSRIIDTLSIARR---------KHPSSRND-------- 140
                     A +      P D  R +   S+ R          ++ + R+         
Sbjct: 344 DAAKANTSAEAMVCMATDGPWDMRRFMHECSVLRDGVAFPPVCYRYINVRHSYSDHFKCR 403

Query: 141 ---LNSLCKRYGITISHRSKHGALLD----SHLLSDVYIK 173
              L  + K+  ++   R +H  + D    + +L++++ +
Sbjct: 404 QAKLTHMLKKMSMSFEGR-RHSGIDDTRNIARVLAELFAR 442


>gi|239978446|ref|ZP_04700970.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
 gi|291450342|ref|ZP_06589732.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
 gi|291353291|gb|EFE80193.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 237

 Score = 59.1 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 69/240 (28%), Gaps = 25/240 (10%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    +       +  TG D++ DR++    V         R  +  + P       EA 
Sbjct: 1   MTHWYEGPLAALRLRATGPDAEEDRLVTAAVVVQDLAGARPRVLRWLVSPGVTVTEEEAA 60

Query: 61  KLHGITDEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           + HG+T + ++       P    +               +  +A   +  ++ EL+R   
Sbjct: 61  R-HGLTRDQVERTGRWPAPVMEEVGRSLAAH-AAAGRPLVVDDAPAALTLLDRELRRHRA 118

Query: 116 DPLDPSR--------IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             L                L     ++      L++LC RYG+       H A  ++   
Sbjct: 119 SSLGAYLAGVPLSVLDPCVLDTHLDRYRKGSRQLDALCVRYGVPAP--PPHDAAEEARTA 176

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD--------KPLFTRITKE 219
            +V   +    +         E    +E+  T        R          PL  R    
Sbjct: 177 IEVVRALARVFAPRLQRLTPGELHALQEDWHTAQVRGGAARPARERADTTWPLRPRAAAA 236


>gi|297806567|ref|XP_002871167.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317004|gb|EFH47426.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 464

 Score = 59.1 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 65/188 (34%), Gaps = 12/188 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   K+  I  D E    +  ++ ++ + AV+  D       F   + PN          
Sbjct: 135 MEPTKIEMIAIDCEMVLCEDGSEALVRVAAVD-RDLKVILDEF---VKPNQPVVDYRTF- 189

Query: 62  LHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           + G+T + L+    S   I  +   F + ++   +  +   D+  +  +  R+    L  
Sbjct: 190 ITGLTAQDLEKATLSVVDIQEKLLMFLS-EDTILVGQSLNHDLKVLKMDHARVIDTSLVF 248

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCK-RYGITISHRS-KHGALLDSHLLSDVYIKMMVGG 178
               D     RR     R  LN LCK   G  +      H  + D+     + + ++  G
Sbjct: 249 KYNYD---GTRRPLRLKRPSLNHLCKCILGYEVQKEGVPHNCVHDAEAAMKLVLAILENG 305

Query: 179 SQINFGFK 186
            + +    
Sbjct: 306 VETSVPLS 313


>gi|154296804|ref|XP_001548831.1| hypothetical protein BC1G_12491 [Botryotinia fuckeliana B05.10]
 gi|150843145|gb|EDN18338.1| hypothetical protein BC1G_12491 [Botryotinia fuckeliana B05.10]
          Length = 470

 Score = 59.1 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 72/225 (32%), Gaps = 29/225 (12%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K R +  D E  G       ++ +  ++ +  +        F+CP   K +     +HGI
Sbjct: 218 KFRAVTVDCEMAGTSGGTGEVVMLCVIDYITGAVL---LHRFVCP-REKITQMRSSIHGI 273

Query: 66  TDEFLKDKPSFSSIF-------SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           +   L +               SE W + ++     + H  + D+  +     RI     
Sbjct: 274 SKSTLDNANLQGQALSGWEGARSELWKYIDDH-TILVGHALQHDLDALRIIHPRI----- 327

Query: 119 DPSRIIDT--LSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIK 173
                +D+  LS         +  L +LC       I       H    D     DV + 
Sbjct: 328 -----VDSGILSRNAVGIRRIQWGLQTLCSELLNIKIRNKKGGIHDCFEDVLATRDVVLS 382

Query: 174 MMVGGS--QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
                   Q     K +E+   ++E++ +      +R +    R+
Sbjct: 383 CTRDKRAFQTWAERKRSEELHLQKERERMRQEKEDERARKDLLRV 427


>gi|161485723|ref|NP_660867.3| exonuclease I [Buchnera aphidicola str. Sg (Schizaphis graminum)]
 gi|25090272|sp|Q8K923|EX1_BUCAP RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
           Full=DNA deoxyribophosphodiesterase; Short=dRPase
 gi|21623449|gb|AAM68078.1| exodeoxyribonuclease I [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 482

 Score = 59.1 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 77/193 (39%), Gaps = 27/193 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEA 59
           ++KN++  + +D ET G+ +  D+  +  ++    +++        +  P +     P +
Sbjct: 5   LKKNEVNFLFYDYETFGIHTSLDKPAQFSSIRTDKNFNIMEEPKCFYCFPSDDYLPDPSS 64

Query: 60  LKLHGITDEFLKDKPSFSSIF--SEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           + + GIT E+  +K  F+      +  D   + N   I +N   FD         R   D
Sbjct: 65  ILITGITPEY-TEKHGFNEYKFSKKIHDVLLKPNTCIIGYNNINFDDEITRNIFYRNFLD 123

Query: 117 PLDPSR-----IIDTLSIARRKH---PSS----RN-------DLNSLCKRYGITISHRSK 157
           P + S        D L++ R  +   PS     +N        L+ L ++  I  SH + 
Sbjct: 124 PYEWSWKNNNSRWDLLNVVRACYALRPSGIQWPKNEFGLPVFKLSDLTQKNNI--SHYNA 181

Query: 158 HGALLDSHLLSDV 170
           H A  D +   ++
Sbjct: 182 HDATSDVYATIEL 194


>gi|85106592|ref|XP_962216.1| hypothetical protein NCU05217 [Neurospora crassa OR74A]
 gi|74696524|sp|Q7S9B7|REXO4_NEUCR RecName: Full=RNA exonuclease 4
 gi|28923815|gb|EAA32980.1| predicted protein [Neurospora crassa OR74A]
          Length = 406

 Score = 59.1 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 62/170 (36%), Gaps = 19/170 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G        + +    ++D+   ++ +  ++ P           + GI+ 
Sbjct: 215 KYLSIDCEMVGTGPSGATSV-LARCSIVDFHG-HQIYDSYVRPTAFVTDWR-THVSGISK 271

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-DT 126
             +    SF S+ +        +    + H+ K D+  +             P R I DT
Sbjct: 272 RHMASARSFESVQATVAALLKGR--ILVGHDVKHDLEVL---------GFEHPHRDIRDT 320

Query: 127 LSIA--RRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIK 173
              +  R+     +  L  L K   GI I H+ +H ++ D+ +   ++ K
Sbjct: 321 AKYSGFRKYGHGPKPSLRVLAKEVLGIEI-HQGQHSSVEDARVAMLLFRK 369


>gi|91093385|ref|XP_971552.1| PREDICTED: similar to AGAP012804-PA [Tribolium castaneum]
 gi|270015360|gb|EFA11808.1| hypothetical protein TcasGA2_TC008587 [Tribolium castaneum]
          Length = 211

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 30/172 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLH- 63
           R +  D+E TGLD   D+I+E+  +               +  + +       E  K H 
Sbjct: 35  RVVWVDMEMTGLDVATDKIMEVACIITDGDLNIIAEGPDLIIHHPQNILDKMNEWCKTHH 94

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAELQRINKD 116
              G+++  LK K S      +  DF      E+ +    ++   D  F+   + R+++ 
Sbjct: 95  SKSGLSEACLKSKISVEEAQDKLMDFVAEYVTEKVSPLAGNSVYMDRLFLRKYMPRLHEY 154

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK-----HGALLD 163
                  + T+                LC+R+   +   +      H AL D
Sbjct: 155 LHYRIIDVSTVKE--------------LCRRWNPDVYKEAPKKAFSHRALSD 192


>gi|84387084|ref|ZP_00990106.1| hypothetical protein V12B01_03993 [Vibrio splendidus 12B01]
 gi|84377945|gb|EAP94806.1| hypothetical protein V12B01_03993 [Vibrio splendidus 12B01]
          Length = 176

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 22/185 (11%)

Query: 4   KNKMRKIVFDIE----------TTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVFLCPN 51
            N  R + FD+E          TTG       IIEIG   ++L+  +   R  Q ++ P 
Sbjct: 1   MNHNRVVCFDLEMCCWSEDGVGTTG------EIIEIGLAEIDLVSGTIVKRA-QYYVKPE 53

Query: 52  GRKNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
             + S    +L GIT   + K      S+       F      + A   + D+      +
Sbjct: 54  KDEVSLFCAELTGITPRKIEKQGRPLESVIKSMIKNFGGPKKIYAAW-GRDDLILHKECI 112

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++  + P      I TL   + +    R    +  +   I    R  H   +D++ L+ +
Sbjct: 113 EKGIEPPFSEFLNIATLYRVQNRLKEKRIGHRAAQEAKNIEWEGRQ-HSGYVDAYNLAKL 171

Query: 171 YIKMM 175
            + M+
Sbjct: 172 ALTML 176


>gi|186520362|ref|NP_001119175.1| SDN2 (SMALL RNA DEGRADING NUCLEASE 2); exonuclease/ nucleic acid
           binding [Arabidopsis thaliana]
 gi|332003503|gb|AED90886.1| small RNA degrading nuclease 2 [Arabidopsis thaliana]
          Length = 352

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 66/188 (35%), Gaps = 12/188 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +   K+  I  D E    +  ++ ++ + AV+  D       F   + PN          
Sbjct: 135 MEPTKIEMIAIDCEMVLCEDGSEAVVRVAAVD-RDLKVILDEF---VKPNQPVVDYRTF- 189

Query: 62  LHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           + G+T + L+    S   I  +   F + ++   +  +   D+  +  +  R+    L  
Sbjct: 190 ITGLTAQDLEKATISVVDIQEKLLMFIS-EDTILVGQSLNHDLKVLKVDHARVIDTSLVF 248

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCK-RYGITISHRS-KHGALLDSHLLSDVYIKMMVGG 178
               D     RR     R  LN LCK   G  +      H  + D+     + + ++  G
Sbjct: 249 KYNYD---GTRRPLRLKRPSLNYLCKCILGYEVQKEGVPHNCVHDAEAAMKLVLAILDNG 305

Query: 179 SQINFGFK 186
           ++ +    
Sbjct: 306 AETSVPLS 313


>gi|298369765|ref|ZP_06981082.1| oligoribonuclease [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282322|gb|EFI23810.1| oligoribonuclease [Neisseria sp. oral taxon 014 str. F0314]
          Length = 185

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 64/177 (36%), Gaps = 29/177 (16%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK----NSP 57
           + +N       D+E TGLD + +RIIE+  +            +V++     +       
Sbjct: 1   MTQNASNLCWLDMEMTGLDPERERIIEVAMIITDSDLNVLAQSEVYVVHQSDELLDGMDA 60

Query: 58  EALKLHGIT--DEFLKD-KPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAEL 110
                HG T   + +++ + + + +  +  DF      E+      ++   D  F+   +
Sbjct: 61  WNTATHGRTGLTQRVRESRLTEAEVEQKLLDFIAQWIPEKATPMCGNSIHQDRRFMVKYM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
            R+  +     R +D             + L  L KR+   ++     R  H AL D
Sbjct: 121 PRL--EAYFHYRNLDV------------STLKELAKRWNPPVAKGVVKRGSHQALDD 163


>gi|126700012|ref|YP_001088909.1| putative exonuclease [Clostridium difficile 630]
          Length = 345

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 18/176 (10%)

Query: 7   MRKIVFDIETTGLDSKNDR------IIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEA 59
           ++++  D E    +SK+ R      II IGAV   + +K    F+  + P +  +  P  
Sbjct: 4   LKRVYIDFEMNMPNSKSKRAVFNSDIIAIGAVMYDEKTKNIDKFKSLIRPVSNEELYPHI 63

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI---NK 115
            +L  I+ E LK  PS+  +  +F  +    +     +     D+   N    R    N 
Sbjct: 64  QELTHISSEELKSAPSYEEVMRKFKKWLGIFSDIKGIYTFGNLDLTCFNNTDMRSAKKNN 123

Query: 116 DPLDPSRIIDTLSIARRKHP------SSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            P   + I D     + K+        +   L +L +   +  S    H  L D++
Sbjct: 124 HPRFVNNIRDLFVDIKEKYINCGMRCMNYISLKNLLEFVNLEFSG-DAHDPLNDAY 178


>gi|317128745|ref|YP_004095027.1| exonuclease RNase T and DNA polymerase III [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473693|gb|ADU30296.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           cellulosilyticus DSM 2522]
          Length = 312

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 73/183 (39%), Gaps = 24/183 (13%)

Query: 9   KIVFDIETTG----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            I FD E       +  +    I +GAV+    S+T  TF  F+ P N    S     L 
Sbjct: 7   YIFFDFEMLCSNKNMSFREMEAIRLGAVKYDIESETVSTFDHFIKPINDEPLSAFCKNLT 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I++E LK+  SF  +F++F  +            ++F   +  ++L R+  D       
Sbjct: 67  RISEENLKNAKSFPVVFADFLRWIGGVKK------SRF-FSWSKSDLSRLIIDSKTHHIP 119

Query: 124 IDTLSIARRKHPS---------SRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           + T+   ++++           S+N   + +  K Y ++      H  + D++    +Y+
Sbjct: 120 LSTIYKIKKRYIDFQAIFSKRVSKNTPSVENALKLYELSFKG-QLHNPVDDAYNTLRIYL 178

Query: 173 KMM 175
             +
Sbjct: 179 SFL 181


>gi|228472478|ref|ZP_04057240.1| exonuclease, RNase T and DNA polymerase III [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276163|gb|EEK14910.1| exonuclease, RNase T and DNA polymerase III [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 184

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 12/178 (6%)

Query: 8   RKIVFDIETT---GLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALK 61
           + I+ D+E T   G+  K +   IIEIG   L     + +    + + P   K SP   +
Sbjct: 4   KIIIIDLEATCWEGIPPKGEVSEIIEIGICLLDTLTGEVSDNRGILVKPTHSKISPFCTQ 63

Query: 62  LHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           L  +T E + ++  SF          +      W A    +D   +  +           
Sbjct: 64  LTTLTPELVAREGVSFEEALQILKKEYQAYQYTW-ASYGNYDRNMLQKQCALRKLPYPMR 122

Query: 121 SRIIDTLSIARRKHPSSRNDLN--SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           +  I+     +      +  L          I +   + H    D++ ++ +  K++ 
Sbjct: 123 NEHINVKERFQEVTQHPK-RLGMHQALNYLKIPLVG-THHRGKDDAYNIAKIMYKLIT 178


>gi|167563592|ref|ZP_02356508.1| oligoribonuclease [Burkholderia oklahomensis EO147]
 gi|167570756|ref|ZP_02363630.1| oligoribonuclease [Burkholderia oklahomensis C6786]
          Length = 201

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 21/171 (12%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVE---LLDYSKTNRTFQVFLCPNG-RKNSPEA 59
           +N++  +  D+E TGL+  +DRIIEI  V     LD +     F +        K     
Sbjct: 15  RNELNLVWLDMEMTGLNPDSDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWN 74

Query: 60  LKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQR 112
              H   G+ D       + +   ++   F  +      +    ++   D  F+   +  
Sbjct: 75  KNTHGRSGLIDRVRASTVTEADAAAQIEAFLGQHVPPGKSPMCGNSICQDRRFMARWMPE 134

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + +     +  + TL    R+   +                 R+ H AL D
Sbjct: 135 LERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 175


>gi|79547863|ref|NP_201525.2| SDN3 (SMALL RNA DEGRADING NUCLEASE 3); exonuclease/ nucleic acid
           binding [Arabidopsis thaliana]
 gi|75330762|sp|Q8RXK2|SDN3_ARATH RecName: Full=Small RNA degrading nuclease 3
 gi|19423880|gb|AAL87318.1| unknown protein [Arabidopsis thaliana]
 gi|25055029|gb|AAN71976.1| unknown protein [Arabidopsis thaliana]
 gi|332010934|gb|AED98317.1| small RNA degrading nuclease 3 [Arabidopsis thaliana]
          Length = 782

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 26/222 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D E    +  +  ++ +GAV+  D       F   + P+ +        + G+T 
Sbjct: 144 RMLSIDCEMVTCEDGSQALVRVGAVD-RDLKVVLDKF---VKPD-KPVIDYKTDITGVTA 198

Query: 68  EFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           E L+    S + I  +   F +      + H    D+  +           +D +R+IDT
Sbjct: 199 EDLERATLSVADIQKKLRRFLSV-GTILVGHGLHNDLQVLR----------IDHARVIDT 247

Query: 127 LSIARRKH--PSSRNDLNSLCKR-YGITIS-HRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
             +        + R  LN+LCK   G  +    + H  + D+     + +  +  G+   
Sbjct: 248 SYVFEFVDAPKTQRPSLNNLCKSVLGQEVRMDGAAHNCVHDAAAAMKLVLAAVEKGAATL 307

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRD---KPLFTRITKEEL 221
              +  E+    E+++        K       +   +  EEL
Sbjct: 308 --IQPTEEMMVAEKRRQEARQEAGKAQLFLHKIPHDVPSEEL 347


>gi|68163427|ref|NP_001020160.1| three prime repair exonuclease 1 [Rattus norvegicus]
 gi|60688197|gb|AAH91242.1| Trex1 protein [Rattus norvegicus]
 gi|149018474|gb|EDL77115.1| rCG26064 [Rattus norvegicus]
          Length = 316

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 71/197 (36%), Gaps = 36/197 (18%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ-----------------VF 47
           +    I  D+E TGL     +I E+  + +  ++  N +                     
Sbjct: 10  HMQTLIFLDLEATGLPYSQPKITELCLLAVHRHALENSSMSEGQPPPVPKPPRVVDKLSL 69

Query: 48  LCPNGRKNSPEALKLHGITDEFLK--DKPSFSSIFSEFWDFFNE---QNAEWIAHN-AKF 101
               G+  S  A ++ G+T   L+   +  F+   +     F +   Q    +AHN  ++
Sbjct: 70  CIAPGKPCSSGASEITGLTTAGLEAHGRQRFNDNLATLLQVFLQRQPQPCCLVAHNGDRY 129

Query: 102 DVGFINAELQRIN-KDPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGI 150
           D   + AEL  ++   PLD +  +D+++  +            P     L S+  R YG 
Sbjct: 130 DFPLLQAELASLSVISPLDGTFCVDSIAALKTLEQASSPSEHGPRKSYSLGSIYTRLYGQ 189

Query: 151 TISHRSKHGALLDSHLL 167
             +    H A  D   L
Sbjct: 190 APTD--SHTAEGDVLAL 204


>gi|89330230|emb|CAJ84172.1| exodeoxyribonuclease I [Escherichia coli K-12]
          Length = 475

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 59/192 (30%), Gaps = 27/192 (14%)

Query: 1   MIR--KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS- 56
           M+   K +   +  D ET G     DR  +  A+    +++        +  P       
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 57  PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114
           P A+ + GIT +  + K  + ++  +     F   +      +N +FD         R  
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP   S          +D +       P                L  L K  GI   H 
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HS 178

Query: 156 SKHGALLDSHLL 167
           + H  + D +  
Sbjct: 179 NAHDVMADVYAT 190


>gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54]
 gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54]
          Length = 889

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 23/144 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           IV D ETT LD++   ++ I     LD                       ++  G T   
Sbjct: 316 IVIDTETTSLDARTAGLVGISLCAELDR--------------AWYIPLAHIEATG-TP-- 358

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +   S + +         +   + HN K+D   +  +      +    +   DT+  
Sbjct: 359 VPGQLPISEVMAVLEPLLTCADILKVGHNLKYDWTVLKMQ---TGVEIFPLA---DTMVA 412

Query: 130 ARRKHPSSRNDLNSLCKRYGITIS 153
           A          L+ LC   G+ ++
Sbjct: 413 AHLLEKGRTLKLDDLCAEIGLELT 436


>gi|297298942|ref|XP_002805307.1| PREDICTED: 3'-5' exoribonuclease 1-like [Macaca mulatta]
          Length = 340

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 65/181 (35%), Gaps = 15/181 (8%)

Query: 41  NRTFQVFLCPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEW 94
             TFQ ++ P    + S   + L GIT + +    +F  +  +  D+        +    
Sbjct: 158 EDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYS 217

Query: 95  IAHNAKFDVGF---INAELQRINKDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150
           I  +  +D+     I  +L R+   P       I        K P S+  L  + ++ G+
Sbjct: 218 ILTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGM 277

Query: 151 TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
               R  H  L DS  ++ + ++M+    Q     + NE     +      ++ +     
Sbjct: 278 DYDGR-PHCGLDDSKNIARIAVRML----QDGCELRINEKIHAGQLMSVSSSLPIEGTPP 332

Query: 211 P 211
           P
Sbjct: 333 P 333


>gi|328776163|ref|XP_003249125.1| PREDICTED: hypothetical protein LOC100577651 [Apis mellifera]
          Length = 321

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 22/150 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND--RIIEI--------GAVELLDYSKTNRTFQVFLCP 50
           MIR      I FD+ETTGL +KN   ++ E+              D+    R  Q  + P
Sbjct: 1   MIRT----FIFFDLETTGLITKNCMPKVTELSLIAVSRTAVCNTKDFLP--RVLQKLILP 54

Query: 51  --NGRKNSPEALKLHGITDEFLKDKPSFS-SIFSEFWDFFNEQNAE--WIAHN-AKFDVG 104
                  S E   L G+++E L +   F+  +++   +F N Q A   ++A+N   FD  
Sbjct: 55  IHPNLNISKEIETLTGLSNENLCEIQHFNCDVYNLIINFINRQKAPTCFVAYNGNNFDYP 114

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKH 134
            + +EL+ I+K   +    ID L + +   
Sbjct: 115 ILLSELKTIDKSFSENILSIDMLQLIKDFF 144


>gi|330804902|ref|XP_003290428.1| hypothetical protein DICPUDRAFT_154946 [Dictyostelium purpureum]
 gi|325079439|gb|EGC33039.1| hypothetical protein DICPUDRAFT_154946 [Dictyostelium purpureum]
          Length = 175

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 30/104 (28%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL    D IIE+  ++L D S     F   + P    +S  A         
Sbjct: 30  ILFLDTETTGLSVATDEIIEVSIIDLYDGS----HFYKLINPTATVSSTSAS-------- 77

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
                              +E  A  IAHN KFD G + +++ +
Sbjct: 78  ------------------IHESGAYIIAHNEKFDRGILASQIGK 103


>gi|295696595|ref|YP_003589833.1| Exonuclease RNase T and DNA polymerase III [Bacillus tusciae DSM
           2912]
 gi|295412197|gb|ADG06689.1| Exonuclease RNase T and DNA polymerase III [Bacillus tusciae DSM
           2912]
          Length = 212

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 6/158 (3%)

Query: 25  RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            IIE+G V ++D    +R    F+ P      +        I  E +    SF  +    
Sbjct: 27  EIIELGLVSVIDGEIFDR-LSTFVRPMRFPTLTERCKNFLQIRQEDVDAGISFRELVETL 85

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID-TLSIARRKHPSSRNDLN 142
             +        +      D+  +               R  D +L   R      +  L 
Sbjct: 86  QTYVELCPTTPVTWGNA-DLQVLRENCGHAGLPFPFDRRERDLSLEYKRFFGNRQQTGLW 144

Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
              + YG T   R  H AL D+    +++ +M+    +
Sbjct: 145 KAIEEYGRTGVGR-HHRALDDALTTVEIF-RMIEKDKE 180


>gi|260683975|ref|YP_003215260.1| putative exonuclease [Clostridium difficile CD196]
 gi|260687635|ref|YP_003218769.1| putative exonuclease [Clostridium difficile R20291]
 gi|260210138|emb|CBA64294.1| putative exonuclease [Clostridium difficile CD196]
 gi|260213652|emb|CBE05490.1| putative exonuclease [Clostridium difficile R20291]
          Length = 345

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 18/176 (10%)

Query: 7   MRKIVFDIETTGLDSKNDR------IIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEA 59
           ++++  D E    +SK+ R      II IGAV   + +K    F+  + P +  +  P  
Sbjct: 4   LKRVYIDFEMNMPNSKSKRAVFNSDIIAIGAVMYDEKTKNIDKFKSLIRPVSNEELYPHI 63

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI---NK 115
            +L  I+ E LK  PS+  +  +F  +    +     +     D+   N    R    N 
Sbjct: 64  QELTHISSEELKSAPSYEEVMRKFKKWLGIFSDIKGIYTFGNLDLTCFNNTDMRSAKKNN 123

Query: 116 DPLDPSRIIDTLSIARRKHP------SSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            P   + I D     + K+        +   L +L +   +  S    H  L D++
Sbjct: 124 HPRFVNNIRDLFVDIKEKYINCGMRCMNYISLKNLLEFVNLEFSG-DAHDPLNDAY 178


>gi|241667560|ref|ZP_04755138.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254876105|ref|ZP_05248815.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842126|gb|EET20540.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 178

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 27/174 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----SPE 58
            ++    +  D+E TGLD  N RIIEI A+            +        +     +  
Sbjct: 1   MQSTDNLVWIDLEMTGLDVDNCRIIEIAAIITDKNLNIIAEAEPIAIHQSDEILNSMNEW 60

Query: 59  ALKLHGIT--DEFLKD-KPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQ 111
            +K+HG T   + +KD K S      +  +F  E    Q++    ++   D  F+   + 
Sbjct: 61  CIKVHGETGLTQRVKDSKTSLKQAEQKILEFIKEYVPYQSSPLCGNSIWQDRRFLAKYMP 120

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY--GITISHRSKHGALLD 163
             N D     R++D               L  L + +  G +   +S H AL D
Sbjct: 121 --NIDDYCHYRMLDV------------TSLKLLNEYWGDGESFYKKSTHKALDD 160


>gi|322488732|emb|CBZ23979.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 879

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 20/185 (10%)

Query: 10  IVFDIETTGLDSKND-------RIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEAL 60
           +V D E T    +          IIE   V +     +    F  F+ P   R+ SP   
Sbjct: 632 LVLDFEAT---CEEHPPPNYLYEIIEFPVVVVDVRLQRVVAEFHRFVRPRYKRELSPFCK 688

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAE-LQRIN 114
           KL G+  E +    S   +  +F  + +          ++         F+    + R  
Sbjct: 689 KLTGMRQEDVDAAASLEEVVRQFERWLSHTLPPHARCMFVTDGPMDLREFMYYHSVSRQG 748

Query: 115 KD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              P    + ID           S+  + ++ +   +    R  H  L D+  ++ + I 
Sbjct: 749 IRFPSLFYQFIDVKQTFACFFRCSQGKIKAMLEVLHLPFEGR-LHSGLDDARNIASIVIG 807

Query: 174 MMVGG 178
           ++  G
Sbjct: 808 LLHYG 812


>gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
 gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
          Length = 879

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 31/150 (20%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FD ETTGL+++  +I+        +       F V L         +          
Sbjct: 318 IIAFDTETTGLNAREAKIVGFSFCVSEN-----EAFYVPLNHTYLAVPSQIS-------- 364

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               K +   I+S F           I HN K+D   I    +        P +  DT+ 
Sbjct: 365 MQTAKRALGQIYSHF----------IIGHNLKYDFAIIENNFK-----LTPPKKYADTMI 409

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKH 158
           +A   +PS R +++ L  R      +++ H
Sbjct: 410 LAWLYNPSLRVNMDDLALRL---FDYKTLH 436


>gi|297153856|gb|ADI03568.1| hypothetical protein SBI_00447 [Streptomyces bingchenggensis BCW-1]
          Length = 200

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 72/198 (36%), Gaps = 28/198 (14%)

Query: 9   KIVFDIE-TT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSP 57
            +VFD+E TT         G   +   I++IGA+ L +       ++  + P      S 
Sbjct: 4   FVVFDLEFTTWQGALEQDWGAPGQLREIVQIGALRLREDFSVVEEYEALVRPVVNPQLSS 63

Query: 58  EALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---- 112
              +L GI  E + ++  S +    +F  F   Q+     ++       +     R    
Sbjct: 64  YFAELTGIDQETVDREGASAAEALGDFLGFCQGQSVLSYGNDMVVLGENVGWARARGENV 123

Query: 113 ----INKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGIT-ISHRSKHGALLDSHL 166
               +    L+    ++T++      P + N ++  L +   +   +   +H AL D + 
Sbjct: 124 KNGFLGAYFLNIRSWLNTVA------PETENVNVGRLWQVLDLPKPAEGKEHSALFDCYS 177

Query: 167 LSDVYIKMMVGGSQINFG 184
            +     +   G+ +  G
Sbjct: 178 FAAAIKHLCGTGAALPEG 195


>gi|322821636|gb|EFZ27902.1| hypothetical protein TCSYLVIO_5870 [Trypanosoma cruzi]
          Length = 793

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 24/187 (12%)

Query: 10  IVFDIETTG---LDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKLH 63
           +V D E T            IIE   V +     +    F  F+ P      S    +L 
Sbjct: 566 LVLDFEATCEESTPPSYLHEIIEFPVVMVDVRLQRAVAEFHHFVKPKVNPKLSEFCRQLT 625

Query: 64  GITDEFLKDKPSFSSIFSEF------------WDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           GI  E + +      +   F                              +  +I++  +
Sbjct: 626 GIRQEDIDNALPLEDVIRRFERWHAQTVPPGSRTMLATDGPT-----DLKEFMYIHSVSR 680

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +  + P    + ID            +  + ++          R  H  + D+  ++ + 
Sbjct: 681 QGIRFPSMFYQWIDVKRFFAHFFQCQQGKIKAMLDALNCPFEGR-LHSGIDDARNVATIV 739

Query: 172 IKMMVGG 178
           I+M+  G
Sbjct: 740 IRMLKLG 746


>gi|71417703|ref|XP_810632.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70875193|gb|EAN88781.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 793

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 24/187 (12%)

Query: 10  IVFDIETTG---LDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKLH 63
           +V D E T            IIE   V +     +    F  F+ P      S    +L 
Sbjct: 566 LVLDFEATCEESTPPSYLHEIIEFPVVMVDVRLQRAVAEFHHFVKPKVNPKLSEFCRQLT 625

Query: 64  GITDEFLKDKPSFSSIFSEF------------WDFFNEQNAEWIAHNAKFDVGFINAELQ 111
           GI  E + +      +   F                              +  +I++  +
Sbjct: 626 GIRQEDIDNALPLEDVIRRFERWHAQTVPPGSRTMLATDGPT-----DLKEFMYIHSVSR 680

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +  + P    + ID            +  + ++          R  H  + D+  ++ + 
Sbjct: 681 QGIRFPSMFYQWIDVKRFFAHFFQCQQGKIKAMLDALNCPFEGR-LHSGIDDARNVATIV 739

Query: 172 IKMMVGG 178
           I+M+  G
Sbjct: 740 IRMLKLG 746


>gi|183985996|gb|AAI66309.1| LOC100158598 protein [Xenopus (Silurana) tropicalis]
          Length = 273

 Score = 58.7 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 22/175 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M      R +  D+E TGLD + D IIE+   +   D         + +          +
Sbjct: 67  MANDMGQRMVWVDLEMTGLDIEKDHIIEMACLITDSDLDILAEGPNLIIKQPDELLDGMS 126

Query: 60  --LKLH----GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAE 109
              K H    G+T    + K +      EF  F  +           ++   D  F++  
Sbjct: 127 DWCKEHHGKSGLTQAVRESKITLQQAEYEFLSFIRQHTPPGVCPLAGNSVHADKKFLDKY 186

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + +  +        + T+  + RR +P            YG+     + H AL D
Sbjct: 187 MPQFMRHLHYRIIDVSTVKELCRRWNPDE----------YGLAPKKAASHRALDD 231


>gi|15617148|ref|NP_240361.1| exonuclease I [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11386767|sp|P57620|EX1_BUCAI RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
           Full=DNA deoxyribophosphodiesterase; Short=dRPase
 gi|25403649|pir||G84994 exodeoxyribonuclease I (EC 3.1.11.1) [imported] - Buchnera sp.
           (strain APS)
 gi|10039213|dbj|BAB13247.1| exodeoxyribonuclease I [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 413

 Score = 58.7 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 76/210 (36%), Gaps = 28/210 (13%)

Query: 1   MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNS 56
           MI+  K     + +D ET G+ +  D+  +   +   ++ +  +     +  P +     
Sbjct: 1   MIQFQKKTPNFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPD 60

Query: 57  PEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRIN 114
           P ++ +  IT ++  K+  +  +   + +D   + N   + +N   FD         R  
Sbjct: 61  PGSVLITHITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNF 120

Query: 115 KDPLDPSR--------IIDTLSIARRKHPSSRN-----------DLNSLCKRYGITISHR 155
            DP + S         I++ L       P+  N            L+ L K   I   H 
Sbjct: 121 FDPYEWSWKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIV--HL 178

Query: 156 SKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           + H A+ D +   ++  K++       F F
Sbjct: 179 NAHNAVSDVYATIEI-AKLVKKKQPRLFDF 207


>gi|242052651|ref|XP_002455471.1| hypothetical protein SORBIDRAFT_03g011452 [Sorghum bicolor]
 gi|241927446|gb|EES00591.1| hypothetical protein SORBIDRAFT_03g011452 [Sorghum bicolor]
          Length = 142

 Score = 58.7 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 10  IVFDIETTGLDSKND---RIIEIGAVELLDYSKT-NRTFQVFLCP--NGRKNSPEALKLH 63
             FD+ET+ +  + D    ++E GAV +         ++   + P       S  +++ +
Sbjct: 49  AFFDVETS-MPQRADQGYALLEFGAVLVCPRRLVEVASYATLVRPADPVSAVSAASVRCN 107

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98
           GIT + +   P F  +    +D  N +   W  HN
Sbjct: 108 GITRDAVSGAPPFRDVADAVYDLLNGR--VWAGHN 140


>gi|284799973|ref|ZP_05985349.2| oligoribonuclease [Neisseria subflava NJ9703]
 gi|284796237|gb|EFC51584.1| oligoribonuclease [Neisseria subflava NJ9703]
          Length = 230

 Score = 58.7 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK----NSP 57
           + +N       D+E TGL+ ++DRIIE+  +             V++     +       
Sbjct: 46  MTQNANNLCWLDMEMTGLNPEHDRIIEVAMIITDSDLNVLAQSDVYVIHQSDELLDGMDE 105

Query: 58  EALKLHGIT--DEFLKD-KPSFSSIFSEFWDF----FNEQNAEWIAHNAKFDVGFINAEL 110
                HG T   + +++ K + + +     DF      E++     ++   D  F+   +
Sbjct: 106 WNTATHGRTGLTQRVRESKLTEAEVEQNLLDFMSAWIPEKSTPMCGNSIHQDRRFMVKYM 165

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R+       +  + TL  +A+R +P       ++ K    ++  R  H AL D
Sbjct: 166 PRLEAYFHYRNLDVSTLKELAKRWNP-------AVAK----SVVKRGSHKALDD 208


>gi|242018695|ref|XP_002429809.1| 3' histone mRNA exonuclease, putative [Pediculus humanus corporis]
 gi|212514827|gb|EEB17071.1| 3' histone mRNA exonuclease, putative [Pediculus humanus corporis]
          Length = 237

 Score = 58.7 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 63/163 (38%), Gaps = 11/163 (6%)

Query: 5   NKMRKIVFDIETTGLDSK-NDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRK-NSPEALK 61
           N    ++ D E T    K    IIE   ++  ++  +    F  ++ P      +    +
Sbjct: 42  NYDYLLILDFEATCDKKKFEQEIIEFPCLKINMNTLREESRFHKYVRPVINPKLTNFCTE 101

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           L GI  E + D+P+F+ ++  F  +       + N+ ++  +  +D+G++      I+K 
Sbjct: 102 LTGIIQEMVDDEPTFNEVYLLFEQWRKSEGLTDDNSIYVT-SGDWDLGYMMPRQCAISKI 160

Query: 117 --PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK 157
             P      ID   +    +      L  + + + I    R+ 
Sbjct: 161 QVPSHMMTWIDIKKLYGINYNCYCGSLIEIFRVFNIEFDGRNH 203


>gi|156376678|ref|XP_001630486.1| predicted protein [Nematostella vectensis]
 gi|156217508|gb|EDO38423.1| predicted protein [Nematostella vectensis]
          Length = 201

 Score = 58.7 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 60/194 (30%), Gaps = 42/194 (21%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYS-----------KTNRTFQVFLCPNGRKNSP 57
            I  D+ETTGL  +   I EI  + +               +      + + P  +    
Sbjct: 2   FIFLDLETTGL-RRPIEITEICLIAVQKDHLLRAAETKTEPRLIDKLSICVKP-VQNIEC 59

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWD-FFNEQNAE--WIAHN-AKFDVGFINAELQRI 113
            A  + GI    L +K  F    ++    F   Q +    +AH+  +FD   + +E    
Sbjct: 60  GASSITGINKMDLAEKREFDRKLAKVIKTFLRRQPSPSCLVAHSGDRFDFDILASEFVNA 119

Query: 114 NKDPLDPSRIIDTLSIARRKHP----------------------SSRNDLNSLCKRY-GI 150
                   +  D+    R+ H                            L +L KR  G 
Sbjct: 120 GVKFPSEIQAADSWKAFRKLHQAEELKTSEAKRTTRTKLAPYTGRLSFSLGNLYKRMTGS 179

Query: 151 TISHRSKHGALLDS 164
            I +   H A  D+
Sbjct: 180 EIEN--SHTAEGDT 191


>gi|254510953|ref|ZP_05123020.1| exodeoxyribonuclease I [Rhodobacteraceae bacterium KLH11]
 gi|221534664|gb|EEE37652.1| exodeoxyribonuclease I [Rhodobacteraceae bacterium KLH11]
          Length = 469

 Score = 58.7 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 28/184 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITD 67
              FD+ET+G     D+ ++   +   D  +      +    +      P AL + G++ 
Sbjct: 2   FAFFDLETSGTSPAFDQPLQFAGILTDDTLEEVERIDIRCRLSPHILPAPWALAVTGVSP 61

Query: 68  EFLKDKPSFSSIFS---EFWDFFNEQN-AEWIAHNA-KFDVGFINAELQ----------- 111
             L + P+  S F    E     +    A W  +N   FD   +                
Sbjct: 62  GMLSN-PNLPSAFEFSQEVSSLIHRWGPATWTGYNNIAFDEQMLRQMFYQNLHPNLYLTQ 120

Query: 112 -----RINKDPLDPSRII---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                R++   L  +  +   D L+    +       L+ L    G      + H AL D
Sbjct: 121 MDGNDRMDIMKLVYATWVLANDALTWPTDEAGKITFKLDQLAPANG--FVSNNFHDALAD 178

Query: 164 SHLL 167
               
Sbjct: 179 VEAT 182


>gi|156549459|ref|XP_001603726.1| PREDICTED: similar to SJCHGC03520 protein, partial [Nasonia
           vitripennis]
          Length = 220

 Score = 58.7 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 70/188 (37%), Gaps = 20/188 (10%)

Query: 3   RKNKMRKIVFDIETTG-----LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-N 55
           +K K   +V D E T      L  +   IIE    V   +  +    F  ++ P      
Sbjct: 15  KKKKYYFLVLDFEATCVKDVILKPQ--EIIEFPCLVVSTEDWQVKDAFHEYVKPRINPKL 72

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-FIN 107
           S    +L GI  E L+++  F  +FS+F  +  + N       + ++     +D+   + 
Sbjct: 73  SDFCTELTGIMQETLENEEHFPEVFSKFCSWIEDGNYFDEKDKSAFVT-CGDWDLKVMLP 131

Query: 108 AELQRINKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           ++ +  N + P      I+  S            L  + +   +    ++  G + D H 
Sbjct: 132 SQCELDNINVPDYLKEWINLKSSFCLMTKYYPRSLADMLRHLNMKFQGKNHCG-IDDVHN 190

Query: 167 LSDVYIKM 174
           ++ V  K+
Sbjct: 191 MTRVIQKL 198


>gi|292625185|ref|XP_002665913.1| PREDICTED: RNA exonuclease 4-like [Danio rerio]
          Length = 418

 Score = 58.7 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 64/178 (35%), Gaps = 16/178 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D E  G+  K +  I +  V L+++  K    +  ++ P  +        + GI 
Sbjct: 232 RAVAMDCEMVGVGYKGEDSI-LARVSLVNHFGKCI--YDKYVKPTEKVTDYR-TAVSGIR 287

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + +K+     ++  E       +    + H    D+  +      +   P    R    
Sbjct: 288 PDDIKNGEDIKTVQKEVAQILKGR--ILVGHAIHNDLKIL------LLDHPKKMIRDTQR 339

Query: 127 LSIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
               R+K  SSR  L +LC++   + +     H ++ D+     +Y  M+    +   
Sbjct: 340 YKPFRQKVKSSRPALRNLCRQILNVQVQQGE-HSSVQDAQATMRLY-TMVRKQWEAEL 395


>gi|157116964|ref|XP_001652909.1| exonuclease [Aedes aegypti]
 gi|108876231|gb|EAT40456.1| exonuclease [Aedes aegypti]
          Length = 234

 Score = 58.3 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 29/198 (14%)

Query: 10  IVFDIETTGLDS------KNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           IV D E T   +      K + IIE    +  L   +    F+ F+ P    + S   ++
Sbjct: 22  IVIDFEATCWPAEDAQKWKKNEIIEFPAVLLNLSNGQIESEFRQFVMPIENPRLSDFCIQ 81

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEW-----------IAHNAKFDV-- 103
           L GI  + +++     +  S F  +       ++               +A     D   
Sbjct: 82  LTGIRQDQVENGVPLHTCLSLFDRWLKKNVLGDRGLILPKMAPSNPTGTVAFATWTDWDL 141

Query: 104 -GFINAELQRINKDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
              +  E  R   +      + ID  +I +  +  +           G+    R  H  +
Sbjct: 142 GSCLTKECTRKKINKAGYFDQWIDVRAIYKTFYQHNPKSFADALTTLGMRFEGR-PHSGM 200

Query: 162 LDSHLLSDVYIKMMVGGS 179
            DS  ++ V  KM   G+
Sbjct: 201 DDSKNIARVVAKMRREGA 218


>gi|298248357|ref|ZP_06972162.1| Exonuclease RNase T and DNA polymerase III [Ktedonobacter racemifer
           DSM 44963]
 gi|297551016|gb|EFH84882.1| Exonuclease RNase T and DNA polymerase III [Ktedonobacter racemifer
           DSM 44963]
          Length = 254

 Score = 58.3 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 62/173 (35%), Gaps = 15/173 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            VF + T GL        EI AV L+D +      +  +       S    + HG++   
Sbjct: 94  AVFHLTTAGLAHDA----EIIAVTLVDRA--GLPIEHLVVRPTEPISFARGEAHGLSAAQ 147

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   PSF  ++         Q    ++    +D+  +     +++  PL   ++ D  + 
Sbjct: 148 LASAPSFPEVWDRLAQAC--QGRFLLSFQCDYDMARLEEVSTQLHLPPLSV-QMEDLRAH 204

Query: 130 ARRKHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            R         L+ LC+R GIT+       H     +  L  V   M   G +
Sbjct: 205 TRSYFGELGLRLSDLCERCGITLPPTPDPLH----CARALHAVLCAMAHEGKE 253


>gi|117165153|emb|CAJ88709.1| putative DEAD/DEAH box helicase [Streptomyces ambofaciens ATCC
           23877]
          Length = 1992

 Score = 58.3 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 19/180 (10%)

Query: 7   MRKIVFDIE----TTGLDSKNDRII-EIGAVEL---LDYSKTNRTFQVFLCPNGRKNSPE 58
           +R +  D+E    TT      +R + E+ AV      ++      ++ +L     +   +
Sbjct: 103 LRTVALDVESVVRTTATAPYLERHVYEVAAVRFGADREWVAAAPRWRRYL-----RFPGD 157

Query: 59  ALKL-HG-ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINK 115
             +L +G + D  L    S    ++E  DF ++ +   +A N    D   ++   +    
Sbjct: 158 TEELRNGSVRDAVLGQGLSQQQAWTELSDFLSDVD-VVVAFNGTTLDFPVVSEAAKEAGI 216

Query: 116 -DPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            DPL   R +D L +A    P+   + L  L  +  ++ S    H A  D+ LL  +  +
Sbjct: 217 SDPLSAVRPVDALYLAHAVWPTAPSHRLQDLALQLDVSRSDLRAHTADGDAVLLVRLLER 276


>gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
 gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
          Length = 898

 Score = 58.3 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 28/146 (19%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +K   + FD ETTGLD++ D+++        + +        +L              
Sbjct: 323 ELSKDTLVAFDTETTGLDTRTDKMVGFSFCTSNEKAYYVPVGHSYL-------------- 368

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                  ++++       +       ++    +  N KFD+  +  +       P     
Sbjct: 369 ------GVEEQVDPEDAVAALKKLMKQK---IVGQNLKFDLSLLYNQYGMEEVLPFA--- 416

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
             DT+ +A    P SR  L+SL +++
Sbjct: 417 --DTMIMAWLTDPGSRVGLDSLAQKF 440


>gi|322505274|emb|CAM39905.2| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 881

 Score = 58.3 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 14/182 (7%)

Query: 10  IVFDIETTG--LDSKN--DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKLH 63
           +V D E T       N    IIE   V +     +    F  F+ P   R+ S    +L 
Sbjct: 634 LVLDFEATCEEHPPHNYLHEIIEFPVVVVDVRLQRVVAEFHRFVRPRYKRELSSFCKRLT 693

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN---EQNAEWI-AHNAKFDVG-FINAE-LQRINKD- 116
           G+  E +    S   +  +F  +F+    Q+A  + A +   D+  F+    + R     
Sbjct: 694 GMRQEDVDTAASLEEVILQFERWFSHTLPQHARCVFATDGPMDLREFMYHHSVSRQGIRF 753

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P    + ID           S+  + ++ +   +    R  H  L D+  ++ + I ++ 
Sbjct: 754 PPLFYQFIDVKQTFACFFQCSQGKIKAMLEALHLPFEGR-LHSGLDDARNIASIVIGLLH 812

Query: 177 GG 178
            G
Sbjct: 813 YG 814


>gi|301768365|ref|XP_002919610.1| PREDICTED: LOW QUALITY PROTEIN: interferon-stimulated gene 20 kDa
           protein-like [Ailuropoda melanoleuca]
          Length = 255

 Score = 58.3 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 11/165 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E  GL     R   +    L+D   T   +  F+ P G         + GIT   
Sbjct: 8   VAMDCEMVGLGP--GRESGLARCSLVDVHGTV-LYDEFIRPEGEITDYR-TPVSGITPWH 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++    F+    +       +    + H+ K D   +   +   +       +    L  
Sbjct: 64  MEAARPFAVARRKILQLL--RGKLVVGHDLKHDFQALKENMSNYSVYDTSTDK---LLQW 118

Query: 130 ARRKHPSSRNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYI 172
                   +  L  L +R  G  I +    H ++ D+    ++Y+
Sbjct: 119 EANLLSHKQVSLRVLSERLLGRRIQNSGFGHSSVEDARATMELYL 163


>gi|154340888|ref|XP_001566397.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 881

 Score = 58.3 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 14/182 (7%)

Query: 10  IVFDIETTG--LDSKN--DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKLH 63
           +V D E T       N    IIE   V +     +    F  F+ P   R+ S    +L 
Sbjct: 634 LVLDFEATCEEHPPHNYLHEIIEFPVVVVDVRLQRVVAEFHRFVRPRYKRELSSFCKRLT 693

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN---EQNAEWI-AHNAKFDVG-FINAE-LQRINKD- 116
           G+  E +    S   +  +F  +F+    Q+A  + A +   D+  F+    + R     
Sbjct: 694 GMRQEDVDTAASLEEVILQFERWFSHTLPQHARCVFATDGPMDLREFMYHHSVSRQGIRF 753

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P    + ID           S+  + ++ +   +    R  H  L D+  ++ + I ++ 
Sbjct: 754 PPLFYQFIDVKQTFACFFQCSQGKIKAMLEALHLPFEGR-LHSGLDDARNIASIVIGLLH 812

Query: 177 GG 178
            G
Sbjct: 813 YG 814


>gi|149200305|ref|ZP_01877325.1| hypothetical protein LNTAR_01777 [Lentisphaera araneosa HTCC2155]
 gi|149136602|gb|EDM25035.1| hypothetical protein LNTAR_01777 [Lentisphaera araneosa HTCC2155]
          Length = 177

 Score = 58.3 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 64/181 (35%), Gaps = 34/181 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRII--EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +     D ET          I  EIG V   +  +    F+             +  ++ 
Sbjct: 2   LEFTAIDFETV---PGEHGPIPAEIGLVVFNEAGQILHYFE------------ASAPVNQ 46

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +  +      S  S + +  +    QN   + HN  +D   +           L+  R +
Sbjct: 47  LYAKSANCCESIVSTWPQIKEHL--QNKVILGHNIGYDYAILKKSF-----PALEIERTV 99

Query: 125 DTLSIARRKHPS--SRNDLNSLCKRYGIT--------ISHRSKHGALLDSHLLSDVYIKM 174
           D+L I+R+ +    S   L++L +   +T          H + H AL D+   + + +++
Sbjct: 100 DSLQISRQVYKDLFSDYSLSALLECLDLTQSLNTLKVNDHFTPHRALYDAMGAALLCLEL 159

Query: 175 M 175
           +
Sbjct: 160 L 160


>gi|187931547|ref|YP_001891531.1| exodeoxyribonuclease I [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187712456|gb|ACD30753.1| exodeoxyribonuclease I [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 482

 Score = 58.3 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 26/195 (13%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEALKL 62
           +    + +D+ET+G+++  D++++  A+           F  F+   P+    SP A   
Sbjct: 3   SNQTLLFYDLETSGINNSFDQVLQFAAIRTYLDFNEIERFNFFVKLNPDTMP-SPMATIT 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP- 120
           H I+        +      +     N      I +N   FD  F+     +    P    
Sbjct: 62  HHISIAQSNTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121

Query: 121 ----SRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT---------------ISHRSKHG 159
                   D   I    +      LN        G                  S    H 
Sbjct: 122 FKNGCSRADLFPIVTCYYLLCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHD 181

Query: 160 ALLDSHLLSDVYIKM 174
           A+ D  +  ++  K+
Sbjct: 182 AITDVIVTVELAKKL 196


>gi|304360909|ref|YP_003857029.1| gp57 [Mycobacterium phage CrimD]
 gi|302858658|gb|ADL71403.1| gp57 [Mycobacterium phage CrimD]
          Length = 184

 Score = 58.3 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 22/178 (12%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKLHGIT 66
           + IV D+ETT LD      +E+  +  +D   + R F   +         P+A++++G  
Sbjct: 4   KLIVVDLETTSLDYDTAAPLEVALL-NVDTGASLR-FVPHVTCEQLGAADPKAMEINGYY 61

Query: 67  DEFL-KDKPSFSS---IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           +  + ++          +SE  D+   +   +   N  FD   +    QR       P  
Sbjct: 62  ERGVWREALDERQTAVAWSEVQDWL--RGNTFAGSNPAFDSTIVAR--QRAGCMFTSPVG 117

Query: 123 IIDTLSIA---------RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +    +A           + P+    L+ + +R G+ ++ R  H A+ D+      +
Sbjct: 118 RVWHHRLADLAAYSAGKLDRDPAELVGLDDVAERLGVQVAQR--HTAIGDAAATGLCF 173


>gi|289615698|emb|CBI57619.1| unnamed protein product [Sordaria macrospora]
          Length = 613

 Score = 58.3 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 84/262 (32%), Gaps = 51/262 (19%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R +V  + TT    G+    D   +IE+G +  +  +  + +R   V + P     +P  
Sbjct: 13  RYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDANNLEEIHRE-SVLVKPVNTPITPLC 71

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
             L  +T E +++  +F    + F  F +E        N  F    + A   R+      
Sbjct: 72  TSLTTLTWEHVRNAGTFRDAINRFDAFASEH---LTGPNLDFVFVTLEAWDLRVQLPREA 128

Query: 116 --------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGI-------TIS 153
                     L  SR  D  +  +R         P   + L ++C    +        I 
Sbjct: 129 RDKAVVLPPYLQHSRTFDLRTEYQRWQQHHPESLPFGPSSLANICAALEVEAVQSSAPIK 188

Query: 154 HR-SKH----------GALLDSHLLSDVYIKMMVGGSQINFG--FKTNEDRFFKEEKKTV 200
           H    H           A+ ++  L+ V   ++      +      T       + +  +
Sbjct: 189 HNLPFHLQALAPASPRRAMEEAVTLARVLRSLIRKSQPAHEHPDVLTRPMDARADVRAFL 248

Query: 201 PNISLLKRDKPLFTRITKEELD 222
              S +     L    T+ EL+
Sbjct: 249 SERSKVLHMSGLPHDTTQSELE 270


>gi|85100635|ref|XP_960999.1| hypothetical protein NCU06684 [Neurospora crassa OR74A]
 gi|28922535|gb|EAA31763.1| conserved hypothetical protein [Neurospora crassa OR74A]
 gi|28949923|emb|CAD70909.1| related to centractin (ARP1) [Neurospora crassa]
          Length = 613

 Score = 58.3 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 84/262 (32%), Gaps = 51/262 (19%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R +V  + TT    G+    D   +IE+G +  +  +  + +R   V + P     +P  
Sbjct: 13  RYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDANNLEEIHRE-SVLVKPVNTPITPLC 71

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
             L  +T E +++  +F    + F  F +E        N  F    + A   R+      
Sbjct: 72  TSLTTLTWEHVRNAGTFRDAINRFDAFASEH---LTGPNLDFVFVTLEAWDLRVQLPREA 128

Query: 116 --------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGI-------TIS 153
                     L  SR  D  +  +R         P   + L ++C    +        I 
Sbjct: 129 RDKAVVLPPYLQHSRTFDLRTEYQRWQQHHPESLPFGPSSLANICAALEVEAVQSSAPIK 188

Query: 154 HR-SKH----------GALLDSHLLSDVYIKMMVGGSQINFG--FKTNEDRFFKEEKKTV 200
           H    H           A+ ++  L+ V   ++      +      T       + +  +
Sbjct: 189 HNLPFHLQALAPASPRRAMEEAVTLARVLRSLIRKSQPAHEHPDVLTRPMDARADVRAFL 248

Query: 201 PNISLLKRDKPLFTRITKEELD 222
              S +     L    T+ EL+
Sbjct: 249 SERSKVLHMSGLPHDTTQSELE 270


>gi|254465457|ref|ZP_05078868.1| exonuclease superfamily [Rhodobacterales bacterium Y4I]
 gi|206686365|gb|EDZ46847.1| exonuclease superfamily [Rhodobacterales bacterium Y4I]
          Length = 169

 Score = 58.3 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 11/172 (6%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSP---EALKL 62
           M+ +  D E + L   +   IE+G  ++ +     +     + P+     S    E+ ++
Sbjct: 1   MQPVFIDFEASSLSPAS-WPIEVGLAKIDNDEIVVK--SRLIRPHDSWAMSEWHLESTEV 57

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI  E L        +          +    ++   +FD  +++  L+ ++ D      
Sbjct: 58  HGIQLEELSVAAPAEEVAHWLS--LEVEGCLLVSDAPEFDQRWLDRLLETLSTDHDLKLA 115

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIK 173
             D +                L   Y   +++R S H A  D+  L+  ++ 
Sbjct: 116 DFDQVVWWAFSEEQGNLKPGGLHNVYS-ELTNRCSTHRAGDDAADLARAWLA 166


>gi|118384040|ref|XP_001025173.1| exonuclease family protein [Tetrahymena thermophila]
 gi|89306940|gb|EAS04928.1| exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 639

 Score = 58.3 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 89/233 (38%), Gaps = 30/233 (12%)

Query: 4   KNKMRKIVF-DIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +N  + + F D E    + K   IIE    V  ++  +   +F  ++ P+    +    +
Sbjct: 410 QNDFQYLFFIDFECNFFNKKF-EIIEFPLHVIDVNSKEIVDSFVSYVKPSN-NITKFITR 467

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAE--LQRIN 114
           L  ITD  +K+ P    +     +F  +      +   + ++   D  F+  E   ++I 
Sbjct: 468 LTKITDTQVKNAPILQQVLVNVQNFLEKYLKVGIDKCAVIYDCDSDSTFLFNETSFKKIK 527

Query: 115 KDPLDPSRIIDTLSIARRKHP-----SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
             P+   + I      +   P      + + L+ + +   +    +   GA  DS   + 
Sbjct: 528 VPPIFE-KYICL----KSVFPVEIANKAPSSLSQMLQILDMKFEGQKHCGA-DDSMNQAK 581

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
           V      G   +  G+  ++D+  K  K +   IS  ++ K +   I + ELD
Sbjct: 582 V------GQKLLQLGYNFSKDQQIKLGKPS--TISRKEKLKLIDIYIKEYELD 626


>gi|159185984|ref|NP_356655.2| hypothetical protein Atu3986 [Agrobacterium tumefaciens str. C58]
 gi|159141118|gb|AAK89440.2| hypothetical protein Atu3986 [Agrobacterium tumefaciens str. C58]
          Length = 205

 Score = 58.3 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 57/167 (34%), Gaps = 16/167 (9%)

Query: 26  IIEIGAVEL--LDYSKTNRTFQVFLCP---NGRK--NSPEALKLHGITDEFL-KDKPSFS 77
           I +IGAV+L          T++V + P   +GR+    P   +L GIT+E +  +     
Sbjct: 32  IAQIGAVKLGLEGGFPLLETYKVLISPVDRHGRRYAIDPFFTRLTGITEENIEAEGVPLQ 91

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS 137
              S F  F             K ++  +          P  P+   D            
Sbjct: 92  DALSSFDSFSEGAQCWSWG---KDELNMMAISTYVAGIQPPMPACRFDNAVRLLLAAGMP 148

Query: 138 RNDL-----NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             DL     NSL   YG+       H AL D+  +S     ++  G 
Sbjct: 149 VEDLAKTPSNSLADYYGVAHPPLQGHDALGDALSVSYALQHLLRSGK 195


>gi|126273831|ref|XP_001370597.1| PREDICTED: similar to interferon-stimulated protein [Monodelphis
           domestica]
          Length = 226

 Score = 58.3 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 13/172 (7%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++ + +  D E  G+    +  +   ++   D       +  F+ P G         + G
Sbjct: 6   SEDQIVAMDCEMVGVGLLRESGLARCSIVDYDGLVV---YDEFIRPEGEITDYR-THVSG 61

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I    +     F S   E      ++    + H+ +FD   +  ++ + N       R  
Sbjct: 62  IEPFHMSMAVPFQSAREEILKLLRDK--LVVGHDLRFDFKALKEDMSKYNLYDTAKDR-- 117

Query: 125 DTLSIARRKHPSSRNDLNSLCKR---YGITISHRSKHGALLDSHLLSDVYIK 173
             L  +       R  L  LC+R     I  S    H ++ D+    ++Y +
Sbjct: 118 -LLWQSGGLGGCRRVSLKVLCERILKRKIQNSKFG-HSSVEDARATMELYKR 167


>gi|325971901|ref|YP_004248092.1| exodeoxyribonuclease I [Spirochaeta sp. Buddy]
 gi|324027139|gb|ADY13898.1| Exodeoxyribonuclease I [Spirochaeta sp. Buddy]
          Length = 471

 Score = 58.3 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 58/180 (32%), Gaps = 27/180 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
           D+ET GLDS+ DRI +       L+ +       ++    +     P +  +  IT + +
Sbjct: 14  DLETFGLDSRYDRIAQFAGQRTDLNLNPIGEPIVLYCKLSDDYLPDPLSCTITSITPQEV 73

Query: 71  -KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            K     S +       F++ N      N  +FD  FI   L R   DP           
Sbjct: 74  NKKGICESDLIDRINSEFSKPNTVVAGFNTIRFDDEFIRNALYRNFLDPYKREWDNYCSR 133

Query: 124 ---IDTLSIARRKHPSS-------------RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              ID +  A    P                  L +L +   I       H AL+D    
Sbjct: 134 WDIIDLVRAAYDLRPEGIAWPPRKEETGNPTFRLVALTQANNIE--QVGAHDALVDVRAT 191


>gi|323526920|ref|YP_004229073.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
           CCGE1001]
 gi|323383922|gb|ADX56013.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
           CCGE1001]
          Length = 203

 Score = 58.3 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 58/175 (33%), Gaps = 29/175 (16%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVE---LLDYSKTNRTFQVFLCPNG-RKNSPEA 59
           ++ M  +  D+E TGLD  +DRIIEI  V     LD       F +        K     
Sbjct: 15  RSDMNLVWLDMEMTGLDPDSDRIIEIAVVVTNSTLDRMVEGPVFAIHQSDETLAKMDQWN 74

Query: 60  LKLH---GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQR 112
              H   G+ D       S +       DF         +    ++   D  F+   +  
Sbjct: 75  QNTHGRSGLIDRVKASTVSEADATVLIRDFLGAYVPPGKSPMCGNSICQDRRFMARWMPE 134

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           +  +     R +D             + L  LC+R+   I      R+ H AL D
Sbjct: 135 L--ETFFHYRNLDV------------STLKELCRRWQPAIYKGFQKRAMHTALAD 175


>gi|254693474|ref|ZP_05155302.1| Exonuclease [Brucella abortus bv. 3 str. Tulya]
 gi|261213730|ref|ZP_05928011.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|260915337|gb|EEX82198.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
          Length = 203

 Score = 58.3 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 16/167 (9%)

Query: 26  IIEIGAVEL--LDYSKTNRTFQVFLCPNGR-----KNSPEALKLHGITDEFL-KDKPSFS 77
           I +IGAV++   +      TF+ ++ P+ R       +     L GIT+E + +D     
Sbjct: 32  IAQIGAVKIGLENELPILETFKAYVTPHDRYGARYAIARYFTDLTGITEEQISRDGKPLK 91

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID-----TLSIARR 132
           +  ++   F     A + +     ++  I          P  P+   D      L+    
Sbjct: 92  TALNDLDSF--SDGATFWSWGKD-ELNMIAISCYVEGIAPPIPAPRFDNAVKLLLAAGMP 148

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               +R   N L   YG+       H AL D+  +      ++  G 
Sbjct: 149 VEDLARTPSNKLADYYGLEHPELQGHDALDDARSIGYTLQYLLSSGK 195


>gi|322688631|ref|YP_004208365.1| hypothetical protein BLIF_0443 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320459967|dbj|BAJ70587.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 493

 Score = 58.3 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 48/198 (24%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVF---------------------LC 49
            DIETTG+D   D II++G     +   +     + +                     + 
Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323

Query: 50  PNGRKN-SPEALKLHGITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNA 99
           P      +    KL GI    ++ +           +    +       +Q   ++AHNA
Sbjct: 324 PENAALGNVLIAKLTGI---DVRGRSSEAGYRLFDEWPQAQAGLLARLTQQ--PYVAHNA 378

Query: 100 KFDVGFIN------AELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
            F+  +        AE  R  +    D L  SR  D  ++   +HP   N L++  KR G
Sbjct: 379 TFEHSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQG 438

Query: 150 -ITISHRSKHGALLDSHL 166
            +  +H  +H  L DSH+
Sbjct: 439 ALDSAHNERHLGLEDSHI 456


>gi|294501668|ref|YP_003565368.1| exonuclease (sporulation inhibitor KapD) [Bacillus megaterium QM
           B1551]
 gi|294351605|gb|ADE71934.1| exonuclease (sporulation inhibitor KapD) [Bacillus megaterium QM
           B1551]
          Length = 204

 Score = 58.3 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 21/181 (11%)

Query: 2   IRKNKMRKIVFDIETT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-N 51
           + KN    +  D E T         G   +   IIE+G V + +    +R F  ++ P +
Sbjct: 1   MDKNSQ-YLFIDFEFTMPEYKGFPKGFFPE---IIEVGLVFVKNQEIIDR-FSSYVQPTH 55

Query: 52  GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
             K +        I    + +  +   +       +              D+  +    Q
Sbjct: 56  FTKLTERCKSFLHIEQNQVNEGITLEQLVQR-LGMYKHSTIITWG---NMDMKVLRQCCQ 111

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +         + ID     +R         L    + YG   + +  H AL D+    ++
Sbjct: 112 KNKVPFPFAGKEIDLSMEYKRFFGDQNQTGLWKAVQEYGKEGTGK-HHCALDDAMTTLNI 170

Query: 171 Y 171
           +
Sbjct: 171 F 171


>gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152]
 gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152]
          Length = 945

 Score = 58.3 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 32/143 (22%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   + FD ETTGL +    +I I     +        +  F         PE  +    
Sbjct: 370 QQPSVCFDTETTGLKALEVELIGIAFSYEIGKG----YYVSF---------PENQEET-- 414

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                       +I  EF  FF  +  E + HN K+D+  ++      N +     ++ D
Sbjct: 415 -----------KAILEEFRPFFESEMIEKVGHNLKYDIKVLS------NYNMPVKGKLFD 457

Query: 126 TLSIARRKHPSSRNDLNSLCKRY 148
           T+      +P  R++++ L + Y
Sbjct: 458 TMIAHYLINPDMRHNMDVLAETY 480


>gi|116049519|ref|YP_791677.1| hypothetical protein PA14_44130 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390052|ref|ZP_06879527.1| hypothetical protein PaerPAb_17961 [Pseudomonas aeruginosa PAb1]
 gi|313106587|ref|ZP_07792814.1| putative exonuclease [Pseudomonas aeruginosa 39016]
 gi|115584740|gb|ABJ10755.1| putative exonuclease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310879316|gb|EFQ37910.1| putative exonuclease [Pseudomonas aeruginosa 39016]
          Length = 183

 Score = 58.3 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 13/174 (7%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGA--VELLDYSKTNRTFQVFLCPNGRKNSPEALK- 61
            +V D+E T    G   +   IIEIGA  V   D  + +  FQ F+ P  R       + 
Sbjct: 4   WLVIDLEATTAEGGWPLEEMEIIEIGATLVAAADARELD-HFQRFVRPVRRPLLTHFCRD 62

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINK-DPL 118
           L  I+   +       +++  F  +  +         +   +D   +  E ++      L
Sbjct: 63  LTHISQANVDGAAHLDTVWEAFERWLAQHRPRLAGWASWGDYDRRQLEQEWRQHGLTSQL 122

Query: 119 DPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                ++            R   LN+  +  G++     +H AL D+   + + 
Sbjct: 123 SEVPHVNLKQRFGEVRQLPRPVGLNAALQLAGMSF-QGQQHRALEDARNTARLL 175


>gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237]
 gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237]
          Length = 945

 Score = 58.3 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 32/143 (22%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K   + FD ETTGL+     ++ I              F             EA K  G 
Sbjct: 370 KQTSVCFDTETTGLNPLTAELVGIA-------------FSW-----------EASK--GF 403

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
              F  DK     I  +   FF ++  E I  N K+D+  ++    ++        +  D
Sbjct: 404 YIPFPADKTEAQEIIEQLRPFFEDEAIEKIGQNLKYDIKVLDKYNVKVKG------KCFD 457

Query: 126 TLSIARRKHPSSRNDLNSLCKRY 148
           T+      +P  R+++  L + Y
Sbjct: 458 TMLAHYLINPDMRHNMEVLAETY 480


>gi|196013998|ref|XP_002116859.1| hypothetical protein TRIADDRAFT_4552 [Trichoplax adhaerens]
 gi|190580577|gb|EDV20659.1| hypothetical protein TRIADDRAFT_4552 [Trichoplax adhaerens]
          Length = 189

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 66/189 (34%), Gaps = 26/189 (13%)

Query: 9   KIVFDIETTGLDSKND----RIIEIGAVELLDYS--KTNRTFQVFLCPN-GRKNSPEALK 61
            +V D E T      D     IIE  A+ L+D S  +    F  ++ P   R  S    +
Sbjct: 7   YLVIDFEATTKSKYRDYHLPEIIEFPAL-LIDASTLEVFSEFHSYVRPTINRTLSKFCKR 65

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG--------FINAELQRI 113
           L GI+   +     F+++   F ++    NA    +N              F+    +  
Sbjct: 66  LTGISQAMVDKASDFATVHHLFLNWL--CNATSNRNNFSMVTSSCKGTIELFLTQCRREK 123

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKH---GALLDSHLLSD 169
              PL     ID   I R+ +   R   ++ +  ++ I    R  H    A      L+ 
Sbjct: 124 VAIPLWIEHWIDLPIIFRKCYGYHRFPTISDMLHKFQIAYEGRFLHGFQRAEN----LAA 179

Query: 170 VYIKMMVGG 178
           +   M+  G
Sbjct: 180 ILCGMLQDG 188


>gi|330815929|ref|YP_004359634.1| oligoribonuclease [Burkholderia gladioli BSR3]
 gi|327368322|gb|AEA59678.1| oligoribonuclease [Burkholderia gladioli BSR3]
          Length = 202

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 31/176 (17%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAV-------ELLDYSK--TNRTFQVFLCPNGRK 54
           +N++  +  D+E TGL+  +DRIIEI  V       + ++      +++ +        +
Sbjct: 15  RNELNLVWLDMEMTGLNPDSDRIIEIAVVVTNSTLDKAVEGPVLAIHQSDETL-----AR 69

Query: 55  NSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFIN 107
                   H   G+ D       S +   +    F  +      +    ++   D  F+ 
Sbjct: 70  MDAWNQSTHGRSGLIDRVRASTVSEAEAAARIQAFLAQYVSPGKSPMCGNSICQDRRFMA 129

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  +       +  + TL    R+   +                 R+ H AL D
Sbjct: 130 RWMPELESFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 175


>gi|154488202|ref|ZP_02029319.1| hypothetical protein BIFADO_01776 [Bifidobacterium adolescentis
           L2-32]
 gi|154083353|gb|EDN82398.1| hypothetical protein BIFADO_01776 [Bifidobacterium adolescentis
           L2-32]
          Length = 485

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/202 (26%), Positives = 77/202 (38%), Gaps = 58/202 (28%)

Query: 12  FDIETTGLDSKNDRIIEIG-----------AVELLDYSKTNRTFQV----------FLCP 50
            DIETTG D     II++G           A     Y      ++           F  P
Sbjct: 258 IDIETTGTDPARVYIIDVGFEYMNMISPRPAAAPTGYQYEQSYYETGDAYGQSRLSFGVP 317

Query: 51  --NGRKNSPEALKLHGITDEFLKDKPS----FSSIFSE----FWDFFNEQNAEWIAHNAK 100
             N    +P  L L GI    ++D+ S    F   + E          +Q   ++AHNA+
Sbjct: 318 AANATLGNPLILDLTGI---DVRDRASGFRLFDE-WPEAQIGLLQRLEQQ--PYVAHNAR 371

Query: 101 FDVGFIN------AELQRINKDPLDPSRIIDTLSIARR---------KHPSSRNDLNSLC 145
           F+  F        AE  R  K  +     IDTL ++RR         +HP   N L++  
Sbjct: 372 FEHSFFMLNVAGYAESYRAGKITI-----IDTLPMSRRWDEGSIPDGEHPYGNNTLDAYA 426

Query: 146 KRYG-ITISHRSKHGALLDSHL 166
           KR G +  S   +H  L D+H+
Sbjct: 427 KRQGALDESKSERHLGLEDTHI 448


>gi|2257567|dbj|BAA21459.1| pi077 [Schizosaccharomyces pombe]
          Length = 231

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 68/191 (35%), Gaps = 34/191 (17%)

Query: 15  ETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEFLK 71
           E  G     + IIE+  +  +L++ S  +  F  ++ P+      +  K L GI    + 
Sbjct: 11  EGCGFS-FENEIIELPCLLFDLIEKSIIDE-FHSYVRPSMNPTLSDYCKSLTGIQQCTVD 68

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAH-------------------NA------KFDV-GF 105
             P FS +  E + F  + +   +                     N        +D+  F
Sbjct: 69  KAPIFSDVLEELFIFLRKHSNILVPSVDEIEIIEPLKSVPRTQPKNWAWACDGPWDMASF 128

Query: 106 INAELQ--RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + +  ++          +D  S  +  +   R ++N + + +G+       H  + D
Sbjct: 129 LAKQFKYDKMPIPDWIKGPFVDIRSFYKDVYRVPRTNINGMLEHWGLQFEGSE-HRGIDD 187

Query: 164 SHLLSDVYIKM 174
           +  LS +  KM
Sbjct: 188 ARNLSRIVKKM 198


>gi|326436372|gb|EGD81942.1| RNA exonuclease 4 [Salpingoeca sp. ATCC 50818]
          Length = 595

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 51/169 (30%), Gaps = 17/169 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEI--GAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + +  D E  G+  K  R +      V        +     F+ P  +        + G+
Sbjct: 299 KLLAIDCEMVGVGKKGLRSVLARCSIVNSRGDVVVD----TFVKPTEKVVDYR-THVSGV 353

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
               L D P+F  +     +    +    + H  K D+  +     R         +   
Sbjct: 354 RPRHLTDAPAFEDVREHVSELV--KGKILVGHAIKNDLKVLKLSHPRHLLRDTSIYKPFK 411

Query: 126 TLSIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIK 173
             +         R  L  L +   GIT+     H ++ D+     +Y+ 
Sbjct: 412 AHAG------GKRPALRRLAQSILGITLQDGE-HDSVEDARAALRLYMH 453


>gi|304360814|ref|YP_003856935.1| gp57 [Mycobacterium phage Angelica]
 gi|302858398|gb|ADL71146.1| gp57 [Mycobacterium phage Angelica]
          Length = 184

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 67/176 (38%), Gaps = 22/176 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---SPEALKLHGIT 66
           IV D+ETT LD      +E+  +       T  + +        +     P+A++++G  
Sbjct: 6   IVVDLETTSLDYDTAAPLEVALL----NVDTGESLRFVPHVTCEQLGAADPKAMEINGYY 61

Query: 67  DEFL-KDKPSFSS---IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR------INKD 116
           +  + ++  +       +SE  D+   ++  +   N  FD   +  +         I + 
Sbjct: 62  ERGVWREALTEHQTAVAWSEVKDWL--RDNTFAGSNPAFDSAIVARQAAGGMFPAPIGRV 119

Query: 117 PLDPSRIIDTLSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                  +   S  +  + P+    L+ + +R G+ ++ R  H A+ D+      +
Sbjct: 120 WHHRLADLAAYSAGKLDRDPAELVGLDDVAERLGVQVAQR--HTAIGDAAATGLCF 173


>gi|205374693|ref|ZP_03227487.1| sporulation inhibitor KapD [Bacillus coahuilensis m4-4]
          Length = 205

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 53/161 (32%), Gaps = 12/161 (7%)

Query: 25  RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGITDEFLKDKPSFSS---IF 80
            IIE+G V   D S    +F  ++ P   K  +P   K   I  E +    SF       
Sbjct: 28  EIIEVGMVVEEDGSII-ESFSSYVQPRVFKTLTPRCKKFLKIKQEDVDGGISFIEFIHYL 86

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID-TLSIARRKHPSSRN 139
            +      + N          D+  +    ++           +D +L   R     ++ 
Sbjct: 87  QKLNKKRKKSNYYL----GNMDMKVLRENCEKAGLLFPFQGEFVDLSLEYKRFFGDRNQT 142

Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            L    + YG        H AL D+    ++Y K++    +
Sbjct: 143 GLWKAVEEYGKD-GVGKHHKALDDAMTTYNIY-KLVEKDKE 181


>gi|254482823|ref|ZP_05096060.1| Exonuclease C-terminal domain family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214036904|gb|EEB77574.1| Exonuclease C-terminal domain family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 460

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 46/154 (29%), Gaps = 24/154 (15%)

Query: 36  DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAE 93
           D +       ++  P N     P+A  + GIT +  L +    +                
Sbjct: 11  DLNPIGEPLVIYSRPANDFLPHPQACLVTGITPQKALAEGLPEAEFIRLIHAELAAPGTC 70

Query: 94  WIAHNA-KFDVGFINAELQRINKDPL--------DPSRIIDTLSIARRKHPSS------- 137
            + +N+ +FD       L R   DP             IID +       P         
Sbjct: 71  GVGYNSLRFDDEVSRYTLYRNFYDPYGREWQNGNSRWDIIDMVRACYALRPEGIEWPLRE 130

Query: 138 ----RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                  L +L    GI  +H + H AL D H  
Sbjct: 131 DGQPSFRLEALTAANGI--AHEAAHDALSDVHAT 162


>gi|49081684|gb|AAT50242.1| PA1575 [synthetic construct]
          Length = 184

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 13/174 (7%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGA--VELLDYSKTNRTFQVFLCPNGRKNSPEALK- 61
            +V D+E T    G   +   IIEIGA  V   D  + +  FQ F+ P  R       + 
Sbjct: 4   WLVIDLEATTAEGGWPLEEMEIIEIGATLVAAADARELD-HFQRFVRPVRRPLLTHFCRD 62

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINK-DPL 118
           L  I+   +      ++++  F  +  +         +   +D   +  E ++      L
Sbjct: 63  LTHISQANVDGAAHLNTVWEAFERWLAQHRPRLAGWASWGDYDRRQLEQEWRQHGLTSQL 122

Query: 119 DPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                ++            R   LN+  +  G++     +H AL D+   + + 
Sbjct: 123 SEVPHVNLKQRFGEVRQLPRPVGLNAALQLAGMSF-QGQQHRALEDARNTARLL 175


>gi|329907300|ref|ZP_08274615.1| Exodeoxyribonuclease I [Oxalobacteraceae bacterium IMCC9480]
 gi|327547025|gb|EGF31914.1| Exodeoxyribonuclease I [Oxalobacteraceae bacterium IMCC9480]
          Length = 477

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 26/196 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G+++++DR  +  A+    + ++      ++  P N     P++  + GIT +  
Sbjct: 10  DYETFGVNTRSDRPAQFAAIRTDAELNEIGDEIMLYCQPANDYLPDPQSCLITGITPQVC 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           L+         +     F+      + +N  +FD       F    +    ++  +    
Sbjct: 70  LQRGLPEYQFAAAIEAAFSASGTVGVGYNTIRFDDEITRFLFWRNLIDPYAREWQNQCGR 129

Query: 124 IDTLSIARRKH---PSSRN-----------DLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            D + + R  +   P   +            L  L K  GI  +H + H AL D      
Sbjct: 130 WDLMDVVRMTYALRPEGIHWPMNDEGKPSFRLELLTKANGI--AHAAAHDALSDVRAT-I 186

Query: 170 VYIKMMVGGSQINFGF 185
              +++       F F
Sbjct: 187 ALARLIRTQQPKLFDF 202


>gi|124266553|ref|YP_001020557.1| exonuclease I [Methylibium petroleiphilum PM1]
 gi|124259328|gb|ABM94322.1| Exodeoxyribonuclease I subunit C [Methylibium petroleiphilum PM1]
          Length = 479

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 52/178 (29%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF- 69
           D ET G   + DR  +   V    + ++       +  P       PE+  L GI  +  
Sbjct: 10  DYETFGRWPRRDRPAQFAGVRTDAELNEIGPPLMHYCQPAPDFLPDPESCLLTGILPQTC 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           L+      +  +             + +N  +FD       F    +    ++  +    
Sbjct: 70  LEQGLPEHAFAAAIERELAAPGTVGVGYNTIRFDDEVTRHLFWRNLMDPYAREWQNGCGR 129

Query: 124 IDTL--------------SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            D L                 R +   +   L  L    G  ++H + H AL D    
Sbjct: 130 WDLLDVVRCTYALRPEGIEWPRHEDGRASFKLEHLTAANG--LAHEAAHDALSDVRAT 185


>gi|307327138|ref|ZP_07606327.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
 gi|306887219|gb|EFN18216.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
          Length = 202

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 75/211 (35%), Gaps = 47/211 (22%)

Query: 9   KIVFDIE-TT-GLDSKND--------RIIEIGAVEL-----LDYSKTNRTFQVFLCPNGR 53
            +VFD+E TT     + D         I++IGA+ +     +D       ++  + P   
Sbjct: 4   FVVFDLEFTTWSGALEQDWSEPGQLREIVQIGALRISTDSSVDAYSVVEEYEALVRPVVN 63

Query: 54  K-NSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV- 103
              SP    L GI  + + ++  + +   S+F  F   Q       +   +  N  +   
Sbjct: 64  PRLSPFFTDLTGIDQQTVDREGVAPAEALSDFLAFCRGQSVLSYGNDMVVLGENVGWARA 123

Query: 104 -------GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT--ISH 154
                  GF+ A    I +  L+    I   + + R             +   +   ++ 
Sbjct: 124 RGEEIKNGFLTAGFLNI-RPWLNTVAPITASANSGRLW-----------EALNLPKPVAG 171

Query: 155 RSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           R  H AL D + ++     +  GG+ +  G+
Sbjct: 172 RE-HSALFDCYSIAAAIRHVFAGGAALPEGW 201


>gi|298354341|dbj|BAJ09462.1| exonuclease motif containing protein Pmn34 [Physarum polycephalum]
          Length = 326

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 75/216 (34%), Gaps = 52/216 (24%)

Query: 4   KNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSK----------------------- 39
           K K+     D ETTGL  K   RI+EI  +E +   K                       
Sbjct: 93  KGKLHFFALDFETTGLTRKELPRILEIS-IEHIPEDKLPELQAPPPPEGAQPSNIDPQSQ 151

Query: 40  --------TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF---- 87
                   T+  +   + P G  +S  A   H I    ++ K + +  F+E   +     
Sbjct: 152 CSMESPTATDSQYYSLIDP-GIPSSIYAYTYHQINRSDVRGKQTMADAFNEIVKWVQKFS 210

Query: 88  ----NEQNAEWIA--HNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS-RND 140
                E++       H AK +   +  EL R N +       ++  +I  +  P   +  
Sbjct: 211 SAKQGEEDLFVFVMPHFAKMEKITLAYELSRANLEAPPNWVFVNATNILEKNLPFLDKIQ 270

Query: 141 LNSLCKR-YGITISHRSKHGALLDS----HLLSDVY 171
           L+ +    YG+  + +  H A  D+      L+ V+
Sbjct: 271 LDHIYSHLYGV--APQRLHRADADTKTVKECLAKVF 304


>gi|213402669|ref|XP_002172107.1| RNA exonuclease [Schizosaccharomyces japonicus yFS275]
 gi|212000154|gb|EEB05814.1| RNA exonuclease [Schizosaccharomyces japonicus yFS275]
          Length = 278

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 52/167 (31%), Gaps = 15/167 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D E  G+ +    +  +  V           +  F+ P  R        + G+  
Sbjct: 104 KYIAMDCEMVGVANDVSVLARVSIVNYHGRVV----YDTFVRPKERVLDWR-TWVSGVKS 158

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L+D PSF        D  + +    + H    D+  +      +   P    R     
Sbjct: 159 HHLRDAPSFEEAQKTVADILDGR--VLVGHAVHHDLKAL------LLSHPRRMIRDTSKF 210

Query: 128 SIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIK 173
              R+        L  L ++  G  I     H ++ D+    ++Y +
Sbjct: 211 PGYRKLAKGRTPSLKKLTQQLLGKEIQTGQ-HSSVQDAQATMELYKR 256


>gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2]
 gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2]
          Length = 893

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 30/139 (21%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ET+ LD  +  I+ I             +F     P      P    LH    + L
Sbjct: 321 AIDLETSSLDPFDCDIVGISV-----------SF----KPKEAYYIP----LHHRNAQNL 361

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            +K     +  +  +   +  A+ +  N KFD   +  +      +P+ P    DT+  A
Sbjct: 362 DEK----EVLKKLKEILEDPGAKIVGQNLKFDYKVLMVK----GVEPVPP--HFDTMIAA 411

Query: 131 RRKHP-SSRNDLNSLCKRY 148
               P   + +L+ L  ++
Sbjct: 412 YLLEPNEKKFNLDDLALKF 430


>gi|138896523|ref|YP_001126976.1| sporulation inhibitor KapD [Geobacillus thermodenitrificans NG80-2]
 gi|134268036|gb|ABO68231.1| Sporulation inhibitor KapD [Geobacillus thermodenitrificans NG80-2]
          Length = 207

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 54/174 (31%), Gaps = 17/174 (9%)

Query: 9   KIVFDIE-------TT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPE 58
            +  D E       TT  G   +   IIE+G V ++D  +    F  ++ P      +  
Sbjct: 7   YLFLDFEFTMPETKTTPNGFSPE---IIEVGLVAVVD-EQIVSQFSSYVKPLRFPQLTDR 62

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                 IT E +    SF  + S    +  E+    +      D+  +    Q    +  
Sbjct: 63  CKSFLNITQEQIDSGMSFYELVSLLRQYDRERPTTVVTW-GNMDMKVLRENCQSARVEFP 121

Query: 119 DPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                 D     +R   +     L    + YG        H AL D+     ++
Sbjct: 122 FTGEHRDLAMEYKRFFGNKNQTALRKAVQEYGNE-GIGKAHCALDDAFTAYTIF 174


>gi|322492134|emb|CBZ27408.1| putative phosphotransferase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 584

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 71/208 (34%), Gaps = 29/208 (13%)

Query: 9   KIVFDIETTG---LDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKN-SPEALKLH 63
            +V D E T        +  +IE   V +   + T    FQ ++ P      S    +L 
Sbjct: 58  YVVLDFEATCEADRRIADAEVIEFPMVLVDARTATPVAEFQRYVRPVKNPVLSRFCTELT 117

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQN--------AEWIAHNAKFDVG-FINAELQRIN 114
           GIT + ++ +  F  ++ E   F  E          +  +     +D+   + A+L+   
Sbjct: 118 GITQDMVRGRDPFPMVYCEALQFLAEAGLGDAPPMRSYCVVTCGDWDLKTMLPAQLRVSG 177

Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRND------------LNSLCKRYGITISHRSKHGA 160
               PL   R  +      +    + +             +  + +  G+ +  R  H  
Sbjct: 178 QQGTPLSFQRWCNLKKCMSQLGFGNGSGGGGPAPPLGLSWIPDMLQMVGLPMQGR-HHSG 236

Query: 161 LLDSHLLSDVYIKMMVGGSQINFGFKTN 188
           + D   L+ V   ++  G  I+  F + 
Sbjct: 237 IDDCRNLAAVLCALLRRGLVIDVTFSST 264


>gi|326204418|ref|ZP_08194276.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           papyrosolvens DSM 2782]
 gi|325985450|gb|EGD46288.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           papyrosolvens DSM 2782]
          Length = 187

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 61/184 (33%), Gaps = 21/184 (11%)

Query: 10  IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KL 62
           I  D+E T  D           IIEIGAV           F V + P       +   +L
Sbjct: 3   IFVDLEATCWDKNEKNKRPHAEIIEIGAVVTGQDLIEISKFSVVIRPEIEPVLSDYCKEL 62

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFF----NEQNAEWIAHNAKFDVGFINAELQRINKD-- 116
            G++   +++   F+   S  + +     N +N         +D+  +   L+R      
Sbjct: 63  TGLSQTDVENGMEFNRAISHLYQWILKYENMENTVLYTW-GDYDIFLLKRSLRRHKYKNK 121

Query: 117 ----PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDV 170
                +    +I+      +      +  N L K   I     H   H ++ D+  +  +
Sbjct: 122 DFLSIIHKGGLINLQEQFMKFTKLPSSSCN-LVKALQIIGENYHGKMHRSVDDAENMIKL 180

Query: 171 YIKM 174
           Y  +
Sbjct: 181 YRYL 184


>gi|300702669|ref|YP_003744269.1| exodeoxyribonuclease i [Ralstonia solanacearum CFBP2957]
 gi|299070330|emb|CBJ41622.1| exodeoxyribonuclease I [Ralstonia solanacearum CFBP2957]
          Length = 489

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 62/224 (27%), Gaps = 32/224 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ET G   + DR  +   +    + ++     ++F  P+      P +  + GIT +  
Sbjct: 21  DYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPVSCLITGITPQQC 80

Query: 71  K-DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           +                        + +N+ +FD         R   DP           
Sbjct: 81  RRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREWQNECGR 140

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              +D +       P                L  L +  G+   H + H AL D      
Sbjct: 141 WDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANGLL--HEAAHDALSDVRAT-- 196

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
                +    ++        D  F   KK      + +  +PL 
Sbjct: 197 -----IALARRVRDAQPRLFDFCFALRKKERVLAEIGETPRPLL 235


>gi|323223540|gb|EGA07861.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB110209-0055]
          Length = 60

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
          + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4  IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58

Query: 71 KD 72
           D
Sbjct: 59 AD 60


>gi|167619167|ref|ZP_02387798.1| oligoribonuclease [Burkholderia thailandensis Bt4]
          Length = 201

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 31/176 (17%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-------LDYSK--TNRTFQVFLCPNGRK 54
           +N++  +  D+E TGL+   DRIIEI  V         ++      +++ +        K
Sbjct: 15  RNELNLVWLDMEMTGLNPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETL-----AK 69

Query: 55  NSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFIN 107
                   H   G+ D       + +   ++   F  +      +    ++   D  F+ 
Sbjct: 70  MDDWNKNTHGRSGLIDRVRVSSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMA 129

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  + +     +  + TL    R+   +                 R+ H AL D
Sbjct: 130 RWMPELERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 175


>gi|308511231|ref|XP_003117798.1| CRE-CRN-4 protein [Caenorhabditis remanei]
 gi|308238444|gb|EFO82396.1| CRE-CRN-4 protein [Caenorhabditis remanei]
          Length = 300

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 78/191 (40%), Gaps = 23/191 (12%)

Query: 12  FDIETTGLDSKND---RIIE--IGAVELLDYSKTNR-TFQVFLCPNGRK-NSPEALKLHG 64
            D ETT     +D    +I+  +  +++   + ++  +F  ++ P      S     L G
Sbjct: 14  LDFETTSDGVYHDYPFEVIQFSVAVLDVKSNTISDDVSFNEYVRPVINPKLSSYCADLTG 73

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLD 119
           I  E L    +F +++ +F  + ++ N E      ++ +++ D+  I     R+ ++PL 
Sbjct: 74  IKQETLDKADTFLNVYKKFLSWLDQNNFEEKKFALVS-DSRQDMWRIAQYQFRLCREPLP 132

Query: 120 ---------PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                         + +++  R        +  +   +G+  S    H A++D   L+ +
Sbjct: 133 SMFRQYINLWRTFGENMTMEERDKLEGNTYMEKMAIFHGVK-SPGGAHNAMIDCLTLARI 191

Query: 171 YIKMMVGGSQI 181
             K++  G+ +
Sbjct: 192 TQKILESGASV 202


>gi|2231221|gb|AAB61982.1| KapD [Bacillus subtilis subsp. subtilis str. 168]
          Length = 205

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 58/181 (32%), Gaps = 16/181 (8%)

Query: 10  IVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKL 62
           ++ D E T  D K         IIE G V+ +D  +   TF  ++ P      +      
Sbjct: 7   LIIDFEFTMPDGKYSPQNFFPEIIEAGIVKSIDD-EVVETFSSYVRPKKFPKLTKRCKSF 65

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             IT + + +   F     +  +   E+N+  I      D+  +       +        
Sbjct: 66  LKITQKQVDEGMRFEDFIRKLNELDPEKNSTIITW-GNMDMKVLKQNCMFNHIPFPFKGE 124

Query: 123 IIDTLSIARRKHPSSRNDLNSL---CKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + D     +         L  L    + YG      + H A  D+     ++ K++    
Sbjct: 125 MRDLSLEYKNFF--GDRTLTGLWKAAEEYG-DSGTGTHHKAHDDALTAYKLF-KLVEQDK 180

Query: 180 Q 180
           Q
Sbjct: 181 Q 181


>gi|15596772|ref|NP_250266.1| hypothetical protein PA1575 [Pseudomonas aeruginosa PAO1]
 gi|107101007|ref|ZP_01364925.1| hypothetical protein PaerPA_01002037 [Pseudomonas aeruginosa PACS2]
 gi|218892469|ref|YP_002441336.1| putative exonuclease [Pseudomonas aeruginosa LESB58]
 gi|254234675|ref|ZP_04927998.1| hypothetical protein PACG_00543 [Pseudomonas aeruginosa C3719]
 gi|254239923|ref|ZP_04933245.1| hypothetical protein PA2G_00554 [Pseudomonas aeruginosa 2192]
 gi|9947538|gb|AAG04964.1|AE004586_2 hypothetical protein PA1575 [Pseudomonas aeruginosa PAO1]
 gi|126166606|gb|EAZ52117.1| hypothetical protein PACG_00543 [Pseudomonas aeruginosa C3719]
 gi|126193301|gb|EAZ57364.1| hypothetical protein PA2G_00554 [Pseudomonas aeruginosa 2192]
 gi|218772695|emb|CAW28480.1| putative exonuclease [Pseudomonas aeruginosa LESB58]
          Length = 183

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 13/174 (7%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGA--VELLDYSKTNRTFQVFLCPNGRKNSPEALK- 61
            +V D+E T    G   +   IIEIGA  V   D  + +  FQ F+ P  R       + 
Sbjct: 4   WLVIDLEATTAEGGWPLEEMEIIEIGATLVAAADARELD-HFQRFVRPVRRPLLTHFCRD 62

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK--FDVGFINAELQRINK-DPL 118
           L  I+   +      ++++  F  +  +         +   +D   +  E ++      L
Sbjct: 63  LTHISQANVDGAAHLNTVWEAFERWLAQHRPRLAGWASWGDYDRRQLEQEWRQHGLTSQL 122

Query: 119 DPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                ++            R   LN+  +  G++     +H AL D+   + + 
Sbjct: 123 SEVPHVNLKQRFGEVRQLPRPVGLNAALQLAGMSF-QGQQHRALEDARNTARLL 175


>gi|158284602|ref|XP_307582.4| Anopheles gambiae str. PEST AGAP012804-PA [Anopheles gambiae str.
           PEST]
 gi|157020970|gb|EAA03378.5| AGAP012804-PA [Anopheles gambiae str. PEST]
          Length = 228

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 58/185 (31%), Gaps = 42/185 (22%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +    +  D+E TGLD + DRI+EI  +                 PN   N P+A+
Sbjct: 38  MSETSVQNLVWIDLEMTGLDVEKDRILEIACIVTDSKLNIIAK-----GPNIIINEPDAV 92

Query: 61  --------KLHGITDEFLKDKP---------SFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
                   K H  +   L +           +   +      +  E+      ++   D 
Sbjct: 93  LAGMNSWCKDHH-SKSGLIEAVKKSTYSVDQAERDVLDFVKKYCPERKCPMAGNSIYMDR 151

Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR-----YGITISHRSKH 158
            FI   +  +N+        + T+                LCKR     Y  +   +  H
Sbjct: 152 LFIMKYMPTLNEYLHYRVIDVSTVKE--------------LCKRWNQNVYNSSPPKKLAH 197

Query: 159 GALLD 163
            AL D
Sbjct: 198 RALDD 202


>gi|239631926|ref|ZP_04674957.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526391|gb|EEQ65392.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 172

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 17/172 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            ++ D E    +S ++R I+I AV + D       F  F+      +  +  +LH I   
Sbjct: 4   YVIMDTE---FNSTSNRAIQISAVRIRDGLHIADQFNRFI-----PSPDKFDQLHIIRTS 55

Query: 69  FLKDK-----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            ++       PS      ++  +      + +  + + D G I    ++ +       + 
Sbjct: 56  NMRYSDYLALPSLQQTVRDYVAWMRTT-TDIVGWSIEGDAGRIRETFKQGSHGIPKNWKF 114

Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ID   I  +++  +    L  L    GI  ++R  H AL D      V  ++
Sbjct: 115 IDIADIVGKQYNFNATPPLQGLANVLGIP-ANR-AHNALDDCLRTFGVIKEL 164


>gi|306836747|ref|ZP_07469709.1| oligoribonuclease [Corynebacterium accolens ATCC 49726]
 gi|304567369|gb|EFM42972.1| oligoribonuclease [Corynebacterium accolens ATCC 49726]
          Length = 213

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSP---EALKLH 63
           R +  D+E TGLD +   I+E+ AV          +   + +     + S       ++H
Sbjct: 15  RLVWIDLEMTGLDPERHVIVEVAAVITDGNLNILGKGIDLVVHATEEELSQMDSFVTEMH 74

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINKDP 117
              G+  E  +   +            NE     A    ++   D  FI A + R+++  
Sbjct: 75  ANSGLDKEIRQSTTTIREAEDAVLALINEHCEHPAPLAGNSIATDRTFIRAYMPRLDEAL 134

Query: 118 LDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 + T+  +ARR HP +  +                 H AL D
Sbjct: 135 HYRMIDVSTIKELARRWHPRAYYN----------QPDKGMAHRALQD 171


>gi|297528923|ref|YP_003670198.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp. C56-T3]
 gi|297252175|gb|ADI25621.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp. C56-T3]
          Length = 206

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 11/176 (6%)

Query: 4   KNKMRKIVFDIE-----T-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NS 56
            + ++ +  D E     T T  +     IIE+G V ++D     + F  ++ P      +
Sbjct: 1   MDSLQYLFLDFEFTMPETKTNPNGFCPEIIEVGLVAVVDDQIIGQ-FSSYVKPLRFPQLT 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
                   IT E +    SF  + S    +  ++    +      D+  +    Q    +
Sbjct: 60  ERCKSFLNITQEQIDRGMSFYELVSLLRQYDRDRPTTVMTW-GSMDMKVLRENCQSAQVE 118

Query: 117 PLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                   D     +R   +     L    + YG   +    H AL D+     ++
Sbjct: 119 FPFTGEHRDLAMEYKRFFGNKNQTALRKAVQEYGNE-AVGKAHCALDDAFTAYTIF 173


>gi|291458895|ref|ZP_06598285.1| exonuclease family protein [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418149|gb|EFE91868.1| exonuclease family protein [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 234

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 63/188 (33%), Gaps = 18/188 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKND--------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           R N +  +V D+E   +  +           II+IGAV L +  +      +++ P    
Sbjct: 9   RGNALNYLVLDLEMCKVPREYQSRGYLCPMEIIQIGAVLLDESFRNMEEISLYVHPEHGV 68

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAEL--- 110
                  L GI    +K+         E     +E+    I +     D   +  EL   
Sbjct: 69  IDRFIANLTGIQRRQVKESKKLREALLELEQRVSEKGEYKI-YTWSGSDYSQLRRELDLK 127

Query: 111 ---QRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHL 166
              +   +  ++  R +D   I   ++   R   L       GIT   +  H  L DS  
Sbjct: 128 EISEEAIERFMEQERWVDYQKIFGERYRLGRKVSLEEALSLCGITPDGK-AHNGLDDSIN 186

Query: 167 LSDVYIKM 174
              +  K+
Sbjct: 187 TGYIIEKL 194


>gi|125571192|gb|EAZ12707.1| hypothetical protein OsJ_02624 [Oryza sativa Japonica Group]
          Length = 304

 Score = 57.5 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 54/190 (28%), Gaps = 16/190 (8%)

Query: 9   KIVFDIETT---GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D E T   G       IIE  AV +     +    F+ ++ P      +    +L 
Sbjct: 30  FVVVDFEATCERGRRIYPQEIIEFPAVLVDAATGRLVSAFRAYVRPRHHPRLTDFCRELT 89

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAE-------WIAHNAKFDVGFINAELQRINK- 115
           GI    +      +       ++               +          +  E +     
Sbjct: 90  GIAQGDVDAGVGLAEALLRHDEWLRAAGVVEGGGRFAVVTWGDADCRTMLEQECRFKGIA 149

Query: 116 DPLDPSRIIDTLSIARRKHPSS--RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            P    R +D              R  L    +  G+    R  H  L D+   + + ++
Sbjct: 150 KPAYFDRWVDLRVHFEAAFGGGGQRVKLQEAVRAAGLEWVGR-LHCGLDDACKTARLLVE 208

Query: 174 MMVGGSQINF 183
           ++  G  I+ 
Sbjct: 209 LLRRGVPISI 218


>gi|308452945|ref|XP_003089242.1| hypothetical protein CRE_11597 [Caenorhabditis remanei]
 gi|308241498|gb|EFO85450.1| hypothetical protein CRE_11597 [Caenorhabditis remanei]
          Length = 264

 Score = 57.5 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 20/171 (11%)

Query: 10  IVFDIETTGLDSKND------RIIEIGAVE--LLDYSKTNRTFQVFLCP-NGRKNSPEAL 60
           ++ D E T  ++          IIE   V+    D+ +  R F  ++ P    K +    
Sbjct: 51  LILDFEATCQENSKGPILPVQEIIEFPVVQLSTSDWKEI-RRFHQYVRPTESSKLTSFCT 109

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF----DVGFINAELQRINKD 116
            L GI  E + +KP+ S +  EF  +   +++    +N  F    D     A        
Sbjct: 110 SLTGIIQEMVDEKPTLSDVLEEFNKWLK-EDSRLENNNFAFVTCGDWDLKVALPNEAKFK 168

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNS----LCKRYGITISHRSKHGALLD 163
            +            ++ +    ND       L K Y +    R  H  + D
Sbjct: 169 NIPIPDYFHQWINVKKAYAEHTNDFARGMMQLLKIYKLQHQGR-HHSGIDD 218


>gi|255567879|ref|XP_002524917.1| exonuclease, putative [Ricinus communis]
 gi|223535752|gb|EEF37414.1| exonuclease, putative [Ricinus communis]
          Length = 504

 Score = 57.5 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 20/173 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D E    +   + ++ +  V+     K +      + P  +  +    ++ G+T  
Sbjct: 144 IIAIDCEMVLCEDGTEALVRVCVVDRNLQVKLDEK----VNP-YKPVADYRTEITGVTAR 198

Query: 69  FLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L     S + I  +F     ++    + H    D+  +           LD +R++DT 
Sbjct: 199 DLDGVSCSLADI-QKFMKKLLQKGTILVGHGLYNDLQALK----------LDHARVVDTS 247

Query: 128 SIARRKHPSSRNDLNSLCKR-YGITI-SHRSKHGALLDSHLLSDVYIKMMVGG 178
            I RR        L++LCK   G  +    + H  + D+     +++  +  G
Sbjct: 248 FIFRRL-DGRPPSLDTLCKSVLGFELRKGGAPHNCMDDASAAMKLFLAKIERG 299


>gi|120553141|ref|YP_957492.1| exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
 gi|120322990|gb|ABM17305.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
          Length = 227

 Score = 57.5 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 55/181 (30%), Gaps = 18/181 (9%)

Query: 10  IVFDIETT---------GLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SP 57
           ++ D+E T         G    ND   IIEIG        +   T    + P      S 
Sbjct: 33  LIIDLEATCWEHRQAPNGEAQSNDNMEIIEIGCALATRQGRLLDTRSFLVRPTRHPVLSE 92

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRINK 115
               L  IT E + + P+F         +  +   +  W +    +D   + A+ Q  + 
Sbjct: 93  FCTGLTSITQEMVDEAPAFPGAIQAMNAWLGDLPDDFIWCSW-GNYDRLHLEAQSQEHDA 151

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLN--SLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            P   +     L    R+    +           + +       H  + D+  +  V   
Sbjct: 152 RPAVLAFPHLNLKRIWRRTTGQKRKNGFAHALAFHDLAFEGH-HHRGVDDARNMVRVLPY 210

Query: 174 M 174
           M
Sbjct: 211 M 211


>gi|257138397|ref|ZP_05586659.1| oligoribonuclease [Burkholderia thailandensis E264]
          Length = 201

 Score = 57.5 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 31/176 (17%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-------LDYSK--TNRTFQVFLCPNGRK 54
           +N++  +  D+E TGL+   DRIIEI  V         ++      +++ +        K
Sbjct: 15  RNELNLVWLDMEMTGLNPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETL-----AK 69

Query: 55  NSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFIN 107
                   H   G+ D       + +   ++   F  +      +    ++   D  F+ 
Sbjct: 70  MDDWNKNTHGRSGLIDRVRVSSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMA 129

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  + +     +  + TL    R+   +                 R+ H AL D
Sbjct: 130 RWMPELERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 175


>gi|167837413|ref|ZP_02464296.1| oligoribonuclease [Burkholderia thailandensis MSMB43]
          Length = 201

 Score = 57.5 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 31/176 (17%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-------LDYSK--TNRTFQVFLCPNGRK 54
           +N++  +  D+E TGL    DRIIEI  V         L+      +++ +        K
Sbjct: 15  RNELNLVWLDMEMTGLSPDTDRIIEIAVVVTNSTLDIALEGPVLAIHQSDETL-----AK 69

Query: 55  NSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFIN 107
                   H   G+ D       + +   ++   F  +      +    ++   D  F+ 
Sbjct: 70  MDDWNKNTHGRSGLIDRVRASSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMA 129

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  + +     +  + TL    R+   +                 R+ H AL D
Sbjct: 130 RWMPELERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 175


>gi|330984983|gb|EGH83086.1| exonuclease RNase T and DNA polymerase III [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 153

 Score = 57.5 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 22/147 (14%)

Query: 48  LCPNGRKNSPEALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           + P+GR    +   +HGIT +  L+           F   + +     +AHN  FD    
Sbjct: 2   IRPDGRVIPNDVTAIHGITTDMALEHGIPKQEALGGFLRIYEQAGLR-VAHNVSFDDRIR 60

Query: 107 NAELQRINKD----PLDPSRIIDTLSIAR------------RKHPSSRNDLNSLCKRYGI 150
               +R   +             T   ++            R    ++  + ++ +    
Sbjct: 61  RIATKRFIGEQAANEFKTVPNYCTCQSSKNIVQCPPTAKMIRAGFGNQFKVPTVTEAMR- 119

Query: 151 TISHRSK---HGALLDSHLLSDVYIKM 174
             +       H A  DS   + +Y  M
Sbjct: 120 HFTGEELVGGHRARQDSEACARIYFAM 146


>gi|83720885|ref|YP_442207.1| oligoribonuclease [Burkholderia thailandensis E264]
 gi|83654710|gb|ABC38773.1| oligoribonuclease [Burkholderia thailandensis E264]
          Length = 229

 Score = 57.5 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 31/176 (17%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-------LDYSK--TNRTFQVFLCPNGRK 54
           +N++  +  D+E TGL+   DRIIEI  V         ++      +++ +        K
Sbjct: 43  RNELNLVWLDMEMTGLNPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETL-----AK 97

Query: 55  NSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFIN 107
                   H   G+ D       + +   ++   F  +      +    ++   D  F+ 
Sbjct: 98  MDDWNKNTHGRSGLIDRVRVSSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMA 157

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  + +     +  + TL    R+   +                 R+ H AL D
Sbjct: 158 RWMPELERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 203


>gi|78065664|ref|YP_368433.1| oligoribonuclease [Burkholderia sp. 383]
 gi|123569006|sp|Q39IC7|ORN_BURS3 RecName: Full=Oligoribonuclease
 gi|77966409|gb|ABB07789.1| Exonuclease [Burkholderia sp. 383]
          Length = 206

 Score = 57.5 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 56/171 (32%), Gaps = 21/171 (12%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVE---LLDYSKTNRTFQVFLCPNG-RKNSPEA 59
           +N++  +  D+E TGLD  NDRIIEI  V     LD +     F +        K     
Sbjct: 15  RNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWN 74

Query: 60  LKLH---GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQR 112
              H   G+ D       + +    +   F  +      +    ++   D  F+   +  
Sbjct: 75  KSTHGRSGLIDRVRASTVTEAEAAEQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPE 134

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +     +  + TL    R+   +                 R+ H AL D
Sbjct: 135 FERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 175


>gi|66811074|ref|XP_639244.1| hypothetical protein DDB_G0283113 [Dictyostelium discoideum AX4]
 gi|60467872|gb|EAL65886.1| hypothetical protein DDB_G0283113 [Dictyostelium discoideum AX4]
          Length = 220

 Score = 57.5 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 69/191 (36%), Gaps = 17/191 (8%)

Query: 4   KNKMRK-IVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKN-SP 57
           K K +  IV D E T    +   N  IIE    +   +  +T  TF+ ++ P    N S 
Sbjct: 18  KQKFKYLIVLDFEATCEKDVKFPNQEIIEFPSVIINTETLETVSTFREYVKPIINPNLSK 77

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDF--------FNEQNAEWIAHNAKFDVGFINAE 109
              +L GI  E +++   F  +     D+               ++       +  +  +
Sbjct: 78  FCTELTGIKQETVENAALFPDVLKSHCDWFFESLPKDIQSDEYCFVCCGDWDLLQCLPKQ 137

Query: 110 LQRINK--DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           L+  N    P   S+ I+        +      + ++ +   I +  R  H  L DS  +
Sbjct: 138 LKLCNNLSKPSYLSKWINIKKQYTLFYNRPSFGMTNMLRELNIPLEGR-HHCGLSDSLNI 196

Query: 168 SDVYIKMMVGG 178
           S +  +M+  G
Sbjct: 197 SKILKRMIEEG 207


>gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
 gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
          Length = 893

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 30/139 (21%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ET+ LD  +  I+ I             +F     P      P    LH    + L
Sbjct: 321 AIDLETSSLDPFDCDIVGISV-----------SF----KPKEAYYIP----LHHRNAQNL 361

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            +K     +  +  +   +  A+ +  N KFD   +  +      +P+ P    DT+  A
Sbjct: 362 DEK----EVLKKLKEILEDPGAKIVGQNLKFDYKVLMVK----GVEPVPP--YFDTMIAA 411

Query: 131 RRKHP-SSRNDLNSLCKRY 148
               P   + +L+ L  ++
Sbjct: 412 YLLEPNEKKFNLDDLALKF 430


>gi|84494356|ref|ZP_00993475.1| oligoribonuclease [Janibacter sp. HTCC2649]
 gi|84383849|gb|EAP99729.1| oligoribonuclease [Janibacter sp. HTCC2649]
          Length = 226

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 64/176 (36%), Gaps = 28/176 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSP---E 58
           R +  R +  D E TGL  +ND ++E+ A V   + +       V + P           
Sbjct: 10  RAHTDRIVWIDCEMTGLSLENDALVEVAALVTDFELNILGDGVDVVIKPTDEALEQMGDF 69

Query: 59  ALKLH---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAEL 110
             ++H   G+ +EF  D  +         D+  E     + A    +    D GF+  ++
Sbjct: 70  VREMHTSSGLINEF-ADGVTIEEAQQRVLDYVREWVPEPRKAPLGGNTVATDRGFLARDM 128

Query: 111 QRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  +     RIID  SI   +RR +P          + Y         H AL D
Sbjct: 129 PAL--EEHLHYRIIDVSSIKELSRRWYP----------RAYFAAPDKNGGHRALAD 172


>gi|261210895|ref|ZP_05925185.1| hypothetical protein VCJ_001149 [Vibrio sp. RC341]
 gi|260839870|gb|EEX66470.1| hypothetical protein VCJ_001149 [Vibrio sp. RC341]
          Length = 156

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 12/163 (7%)

Query: 16  TTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL-KDK 73
           TTG       IIE+G  E+ L   K  +  Q F+ P   + S    +L GIT   + K  
Sbjct: 3   TTG------EIIEVGLAEIDLSAGKIVKRAQYFVKPEHDEISLFCAELTGITPRKIEKQG 56

Query: 74  PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSIARR 132
              + +       F   N  + +     D   +  E Q      P      + TL   + 
Sbjct: 57  RPLAEVLQSMVKNFGGSNKIYAS--WGRDDRILIHECQEKGIPVPFQEFLNLATLYRIQH 114

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +    R    +  +  GI    R  H   +D++ L+ + + M+
Sbjct: 115 RLKDKRIGHRAAQESQGIEWEGRQ-HSGYVDAYNLAKLALTML 156


>gi|190407268|gb|EDV10535.1| RNA exonuclease 4 [Saccharomyces cerevisiae RM11-1a]
 gi|256273947|gb|EEU08866.1| Rex4p [Saccharomyces cerevisiae JAY291]
 gi|259149408|emb|CAY86212.1| Rex4p [Saccharomyces cerevisiae EC1118]
 gi|323307070|gb|EGA60353.1| Rex4p [Saccharomyces cerevisiae FostersO]
 gi|323346704|gb|EGA80988.1| Rex4p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 289

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 18/170 (10%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + I  D E  G+  +     +  I  V    +      F  F+ P  +        + GI
Sbjct: 120 KYIAMDCEFVGVGPEGKESALARISIVNYFGHVV----FDEFVKPREKVVEWR-TWVSGI 174

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E +K+  +F     +  D    +    + H  K D+  +          P    R   
Sbjct: 175 KPEHMKNAITFKEAQKKTADIL--EGRILVGHALKHDLEALMLSH------PKSLLRDTS 226

Query: 126 TLSIARRKHPSSRN-DLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIK 173
                R+ +   +   L  L K    I+I    +H ++ D+     +Y K
Sbjct: 227 RHLPFRKLYAKGKTPSLKKLTKEVLKISI-QEGEHSSVEDARATMLLYKK 275


>gi|255567670|ref|XP_002524814.1| exonuclease, putative [Ricinus communis]
 gi|223535998|gb|EEF37657.1| exonuclease, putative [Ricinus communis]
          Length = 365

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 54/180 (30%), Gaps = 24/180 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D E  G    +D  + + A   L     N  F  ++ P     +    ++ G+T+
Sbjct: 141 KAIAIDCEMVGG--GSDGTLNLCARVCLVDEDENIIFHAYVQPQI-PITDYRYEVTGLTE 197

Query: 68  EFLKDKPSFSSIFSEFWDFF------------NEQNAEWIAHNAKFDVGFINAELQRINK 115
           E L+D      + ++  +                +    + H+   D+  +         
Sbjct: 198 EHLRDAMPLKEVQNKILEILYNGESVGKARLSGGKARLLVGHSLDHDLDCLRMFY----- 252

Query: 116 DPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  + DT         +   + L  L + Y         H    D   +  +Y +M
Sbjct: 253 ---PDHLLRDTAKYRPLMKTNLFSHSLKYLTQTYLGYNIQTGIHDPYEDCVAVMRLYKRM 309


>gi|294053788|ref|YP_003547446.1| Exonuclease RNase T and DNA polymerase III [Coraliomargarita
           akajimensis DSM 45221]
 gi|293613121|gb|ADE53276.1| Exonuclease RNase T and DNA polymerase III [Coraliomargarita
           akajimensis DSM 45221]
          Length = 223

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 19/152 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D E     S+   I+E G V L   +    T+     P G  +  + ++ H I +  L
Sbjct: 8   VIDFEG----SRQSGIVEYGVVTLH-GAMVEATYTGLCLPRGTISDRDRMQ-HRIAESDL 61

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI----------NAELQRINKDPLDP 120
           +++  F   +  F     E      AHN + + GF+             L+      L  
Sbjct: 62  QEEQPFEVQWPLF-SMLRETG-VLCAHNVQVEEGFLRSVWPYPKASPDFLEIDGAPQLSW 119

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGIT 151
              +DTL + RR +P+   + L  L + +G++
Sbjct: 120 GPWLDTLYLYRRIYPNLESHRLEDLVQLFGLS 151


>gi|328850543|gb|EGF99706.1| hypothetical protein MELLADRAFT_94133 [Melampsora larici-populina
           98AG31]
          Length = 194

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 63/184 (34%), Gaps = 22/184 (11%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + K + R +  D E TGLD   ++IIEI  +    +    +      +            
Sbjct: 1   MPKAQDRLVWIDCEMTGLDLSKEQIIEIACIITDKNLEPLDEGISYVIGVEKNILDQMGE 60

Query: 61  KLH------GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKF-DVGFINA 108
                    G+T+E LK K S   +     D+      N +    IA N+ + D  F+  
Sbjct: 61  WCTVQHGKSGLTEECLKSKFSLKQVDQLVRDYIERHIPNSRGQAVIAGNSVYADKAFLLK 120

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITI-------SHRSKHG 159
           ++        +  +  D    A   H      + +  L +R+   +       S  S H 
Sbjct: 121 KISNFFIMIWNVKQEKDMPITAEYLHYRIVDVSSIKELARRWNHDVFLKSKDTSTPSAHR 180

Query: 160 ALLD 163
           AL D
Sbjct: 181 ALDD 184


>gi|308049114|ref|YP_003912680.1| exodeoxyribonuclease I subunit C [Ferrimonas balearica DSM 9799]
 gi|307631304|gb|ADN75606.1| Exodeoxyribonuclease I subunit C [Ferrimonas balearica DSM 9799]
          Length = 470

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 57/181 (31%), Gaps = 31/181 (17%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDEFL 70
           D ET G D   DR  +   +   LD +      + +   P      PEA+ + GIT    
Sbjct: 11  DYETWGADVARDRPAQFAGIRTDLDLNIIEEPVEYYCRLPADYLPKPEAMLVTGITP--- 67

Query: 71  KDKPSFSSIFSEFWDFFNEQNA----EWIAHNA-KFDVGFINAELQRINKDPLDPSRI-- 123
           +       + ++F    +EQ A      + +N+ +FD       L R   DP        
Sbjct: 68  QKANRLGEVEAQFIARVHEQMARPNTCTVGYNSIRFDDEITRYALYRNFFDPYAREWQNG 127

Query: 124 ------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHL 166
                 ID +       P                L  L    GI   H S H A+ D   
Sbjct: 128 NSRWDIIDLVRACYALRPEGIVWPEREDGAPSFKLEHLTAANGI--GHDSAHDAVSDVKA 185

Query: 167 L 167
            
Sbjct: 186 T 186


>gi|300780594|ref|ZP_07090449.1| oligoribonuclease [Corynebacterium genitalium ATCC 33030]
 gi|300533580|gb|EFK54640.1| oligoribonuclease [Corynebacterium genitalium ATCC 33030]
          Length = 217

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 22/174 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFL---CPNGRKNSP 57
           +     R +  D+E TGLD +   I+E+ A V   + +  +    + +        +   
Sbjct: 12  LPAKDDRIVWIDLEMTGLDPQRHVIVEVAALVTDAELNILDGGIDLVVHATDAELAEMDD 71

Query: 58  EALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
              ++HG       I    +  + +  ++         E       ++   D  FI A +
Sbjct: 72  FVTEMHGSSGLTEQIKASTVALREAEEAVLELVDKHCGEHRPPLAGNSIATDRTFIRAHM 131

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +++        + T+  + RR +P          K Y         H AL D
Sbjct: 132 PELDERLHYRMIDVSTIKELTRRWYP----------KAYYNQPGKGMAHRALAD 175


>gi|330800009|ref|XP_003288032.1| hypothetical protein DICPUDRAFT_33426 [Dictyostelium purpureum]
 gi|325081920|gb|EGC35419.1| hypothetical protein DICPUDRAFT_33426 [Dictyostelium purpureum]
          Length = 231

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 65/193 (33%), Gaps = 29/193 (15%)

Query: 10  IVFDIETTGLDSKND------RIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALK 61
           IV D E T    + D       IIE    +   +  +   TF+ +  P      +    +
Sbjct: 34  IVLDFEAT---CEKDQKFPNQEIIEFPSVIVNTETLEIVSTFREYCKPLIVPKLTAFCTE 90

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF--------------DVGFIN 107
           L GI  E + +   F ++    + +  E++   +  N +                   + 
Sbjct: 91  LTGIKQETVDNADLFPNVLKRHYQWL-EESLPGVIVNGQIINDQICFVTCGDWDLRQCLQ 149

Query: 108 AELQRINKDPLDPS--RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            +L+  N  P      + I+        +      + ++ +   + +  R  H  L DS 
Sbjct: 150 KQLKLCNNIPTPNYFKKWINIKLQFTDFYSKPSYGMTNMLRELNLELEGR-HHCGLSDSL 208

Query: 166 LLSDVYIKMMVGG 178
            ++ +  KM+  G
Sbjct: 209 NIARIVKKMLAAG 221


>gi|86146253|ref|ZP_01064578.1| hypothetical protein MED222_16116 [Vibrio sp. MED222]
 gi|218709772|ref|YP_002417393.1| hypothetical protein VS_1784 [Vibrio splendidus LGP32]
 gi|85835964|gb|EAQ54097.1| hypothetical protein MED222_16116 [Vibrio sp. MED222]
 gi|218322791|emb|CAV18968.1| hypothetical protein VS_1784 [Vibrio splendidus LGP32]
          Length = 176

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 66/184 (35%), Gaps = 20/184 (10%)

Query: 4   KNKMRKIVFDIE----------TTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNG 52
            N  R + FD+E          TTG       IIE+G  E+ L      +  Q ++ P  
Sbjct: 1   MNHNRVVCFDLEMCCWSEDGVGTTG------EIIEVGLAEIDLASGTIVKRAQYYVKPEK 54

Query: 53  RKNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            + S    +L GIT   + K      S+       F      + A   + D+      ++
Sbjct: 55  DEVSLFCAELTGITPRKIEKQGRPLESVIKSMIKNFGGPKKIYAAW-GRDDLILHKECIE 113

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           +  + P      I TL   + +    R    +  +   I    R  H   +D++ L+ + 
Sbjct: 114 KGIEPPFSEFLNIATLYRVQNRLKEKRIGHRAAQEAKNIEWEGRQ-HSGYVDAYNLAKLA 172

Query: 172 IKMM 175
           + M+
Sbjct: 173 LTML 176


>gi|27263219|gb|AAN88025.1| putative oligoribonuclease [Diachasmimorpha longicaudata
           entomopoxvirus]
          Length = 206

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 27/167 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG---RKNSPEALKLH---G 64
            D+E TGLD + D I+EIG  +       T+  F + +  +    +       K H   G
Sbjct: 34  LDLEMTGLDPETDNILEIGCFITNDALEITSPIFHMIIHNSDDILKSMDKWCKKTHTKNG 93

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +  E +  K S      +   FF      ++      ++   D GF+   + R+   P+ 
Sbjct: 94  LITEVMNSKTSLEVAEKKLIQFFKAHASSDKAIILAGNSIYIDKGFLCEHMPRLY--PML 151

Query: 120 PSRIIDTLSIA---RRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             R+ID  S A   +R +P          ++Y      R  H A+ D
Sbjct: 152 HYRVIDVSSFAEIFKRVNP----------QKYAQRPKKRCIHRAVND 188


>gi|332707583|ref|ZP_08427616.1| putative exonuclease [Lyngbya majuscula 3L]
 gi|332353646|gb|EGJ33153.1| putative exonuclease [Lyngbya majuscula 3L]
          Length = 186

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 13/187 (6%)

Query: 2   IRKNKMRKIVFDIETT---GLDS--KNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKN 55
           + K   + +V D+E T   G     + + IIEIG  V  +   K      + + P   + 
Sbjct: 1   MSKKLDQILVVDVEATCWQGKPPPGQENEIIEIGICVLDVVSGKPLEKDSILVKPERSRV 60

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWD-FFNEQNAEWIAHNAKFDVG-FINAELQRI 113
           S    KL  +T E +    SF    S   D + + +     A    +D   F      R 
Sbjct: 61  SEFCTKLTTLTQEQVDQGISFVEACSMLQDKYLSARR--VWASYGDYDRNQFQKQCTSRF 118

Query: 114 NKDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            + P       I TL    +  P       +L     + +   + H    D+  ++ ++ 
Sbjct: 119 LRYPFGTRHINIKTLFAISQALPHEVGMAQAL-DLLNLPLEG-THHRGGDDAWNIARIFS 176

Query: 173 KMMVGGS 179
           ++++   
Sbjct: 177 RLLLQLR 183


>gi|307721272|ref|YP_003892412.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294]
 gi|306979365|gb|ADN09400.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294]
          Length = 907

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 54/156 (34%), Gaps = 31/156 (19%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + NK   + FD ETTGLD              ++      +F            P     
Sbjct: 332 KLNKETIVAFDTETTGLD-------------YINNKLVGFSFSF--NDEEAYYVPFGHFY 376

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G     + D+ S   +  +        N++ + HN KFD+ F+   L+  +        
Sbjct: 377 LG-----VADQVS-KDVAKQAMRRI--FNSKVVGHNIKFDLHFVTRFLEEKDLPV----- 423

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
             D++ +A   +P S   L+ L  +    + H   H
Sbjct: 424 YCDSMILAWLINPESALSLDKLSDKL---LGHEMVH 456


>gi|212716216|ref|ZP_03324344.1| hypothetical protein BIFCAT_01132 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660728|gb|EEB21303.1| hypothetical protein BIFCAT_01132 [Bifidobacterium catenulatum DSM
           16992]
          Length = 522

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 74/198 (37%), Gaps = 49/198 (24%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLD-------YSKTNRTFQ---------------VFLC 49
            DIETTG D     II+ G  E ++          +   ++                F  
Sbjct: 292 IDIETTGTDPARVYIIDAGF-EFMNMISPRPAGEPSGYCYEQGYYEAGDAYGQARLSFGV 350

Query: 50  P--NGRKNSPEALKLHGITDEFLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNA 99
           P  N    +P  L L GI    ++D+          +            +Q   ++AHNA
Sbjct: 351 PAQNALLGNPLILDLTGI---DVRDRAGMDFRLFDEWPEAQVGLLQRLEQQ--PYVAHNA 405

Query: 100 KFDVGFINAELQRINKDPLDPS-RIIDTLSIARR---------KHPSSRNDLNSLCKRYG 149
           +F+  F    +    +     +  IIDTL ++RR         +HP   N L++  KR G
Sbjct: 406 RFEHSFFMLNVAGYAESYRAGNITIIDTLPMSRRWDEGSIPDDEHPYGNNTLDAYAKRQG 465

Query: 150 -ITISHRSKHGALLDSHL 166
            +  S   +H  L D+H+
Sbjct: 466 ALDASQNERHLGLEDTHI 483


>gi|332023240|gb|EGI63496.1| Prion protein-interacting protein [Acromyrmex echinatior]
          Length = 218

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 32/190 (16%)

Query: 1   MIRKNK---MRK---IVFDIETTG-----LDSKNDRIIEI-GAVELLDYSKTNRTFQVFL 48
           MI +++    +    +V D E T      L  +   IIE+  AV      K    F  ++
Sbjct: 1   MINRSREVVQKYEYLLVMDFEATCERYTVLKPQ--EIIELPCAVVSTCDWKLKDMFHTYV 58

Query: 49  CPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAK 100
            P      +P   +L GI  E + D+P F+++FS F ++  +         + ++     
Sbjct: 59  KPRVHPTLTPFCTELTGIMQETVDDQPYFANVFSNFCEWLTKGGYFDKPEKSSFVT-CGN 117

Query: 101 FDVG-FINAELQRINKDPLDPSRIIDTLSI----ARRKHPSSRNDLNSLCKRYGITISHR 155
           +D+   + ++         D  +    L      +   +P     L  +  R  + +  R
Sbjct: 118 WDLKTMLPSQCALDGITLPDQFKQWVELKYIFCESTGYYPK---SLKDMLVRLNVPLKGR 174

Query: 156 SKHGALLDSH 165
             H  + D  
Sbjct: 175 -LHSGIDDVK 183


>gi|227832010|ref|YP_002833717.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262184134|ref|ZP_06043555.1| DNA polymerase III subunit epsilon [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453026|gb|ACP31779.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 516

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
              +   I+TTG+     R++ + A+ L    +  + F   + P      P    LHG++
Sbjct: 72  FPFVALTIQTTGIHPSTGRLLTVDALTLNAEGEIGQEFHAVINPGE---DPGPKHLHGLS 128

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
            E ++   SFS +        + +    I H+A +  GFI
Sbjct: 129 AEEVQAGQSFSMLLKPLDRLIDGR--TLIVHDAPYTWGFI 166


>gi|55959491|emb|CAI12491.1| prion protein interacting protein [Homo sapiens]
 gi|56203066|emb|CAI23194.1| prion protein interacting protein [Homo sapiens]
          Length = 222

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 16/154 (10%)

Query: 25  RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSE 82
            IIE   ++L     +   TF +++ P      +P   +L GI    +  +PS   +   
Sbjct: 49  EIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLER 108

Query: 83  FWDFFNEQN-------AEWIAHNAKFDVG-FINAELQRINKDPLDPSRIIDTLSIARRKH 134
             ++  ++        + ++     +D+   +  + Q +     D  +    L  A    
Sbjct: 109 VDEWMAKEGLLDPNVKSIFVT-CGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFA 167

Query: 135 PS--SRNDLNSLCKRYGITISH-RSKHGALLDSH 165
                +N L  + K  G+++ H    H  + D  
Sbjct: 168 MGCWPKNGLLDMNK--GLSLQHIGRPHSGIDDCK 199


>gi|73977197|ref|XP_532608.2| PREDICTED: similar to prion protein interacting protein 1 isoform 1
           [Canis familiaris]
          Length = 219

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 16/154 (10%)

Query: 25  RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSE 82
            IIE   ++L     +   TF +++ P      +P   +L GI    +  +PS   +   
Sbjct: 46  EIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLER 105

Query: 83  FWDFFNEQN-------AEWIAHNAKFDVG-FINAELQRINKDPLDPSRIIDTLSIARRKH 134
             ++  ++        + ++     +D+   +  + Q +     D  +    L  A    
Sbjct: 106 VDEWMAKEGLLDPNVKSIFVT-CGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFA 164

Query: 135 PS--SRNDLNSLCKRYGITISH-RSKHGALLDSH 165
                +N L  + K  G+++ H    H  + D  
Sbjct: 165 MGCWPKNGLLDMNK--GLSLQHIGRPHSGIDDCK 196


>gi|262184889|ref|ZP_06044310.1| oligoribonuclease [Corynebacterium aurimucosum ATCC 700975]
          Length = 214

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 23/169 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP---NGRKNSPEALKLH 63
           R +  D+E TGLD K   I+E+ AV    + +  +    + +        +      ++H
Sbjct: 14  RLVWIDLEMTGLDPKRHVIVEVAAVVTDAELNILDEGIDIVVHATEEELAQMDDFVTEMH 73

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINK 115
              G+  E  +   + +           +       A    ++   D  FI   + R++ 
Sbjct: 74  AKSGLDKEIRESAITIAEAEEAVLKLVEKHCDANHPAPLAGNSIATDRTFIREYMPRLDA 133

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  +ARR HP +  +                 H AL D
Sbjct: 134 ALHYRMIDVSTIKELARRWHPRAYYN----------QPDKGMAHRALQD 172


>gi|15805028|ref|NP_065608.2| interferon-stimulated gene 20 kDa protein [Mus musculus]
 gi|165377193|ref|NP_001106999.1| interferon-stimulated gene 20 kDa protein [Mus musculus]
 gi|12842140|dbj|BAB25487.1| unnamed protein product [Mus musculus]
 gi|12842194|dbj|BAB25509.1| unnamed protein product [Mus musculus]
 gi|12842490|dbj|BAB25623.1| unnamed protein product [Mus musculus]
 gi|18490969|gb|AAH22751.1| Interferon-stimulated protein [Mus musculus]
 gi|71059755|emb|CAJ18421.1| Isg20 [Mus musculus]
 gi|148675134|gb|EDL07081.1| interferon-stimulated protein, isoform CRA_b [Mus musculus]
 gi|148675136|gb|EDL07083.1| interferon-stimulated protein, isoform CRA_b [Mus musculus]
          Length = 181

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 15/166 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D E  GL  +  R+  +    +++ +      +  ++ P G        ++ G+T +
Sbjct: 8   VAMDCEMVGLGPQ--RVSGLARCSIVNIHGAVL--YDKYIRPEGEITDYR-TQVSGVTPQ 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     F     E       +    + H+ K D   +  ++ +         R    L 
Sbjct: 63  HMVRATPFGEARLEILQLL--KGKLVVGHDLKHDFNALKEDMSKYTIYDTSTDR---LLW 117

Query: 129 IARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVY 171
              +    SR  L  LCKR     I  + R  H ++ D+    ++Y
Sbjct: 118 HEAKLQYYSRVSLRLLCKRLLHKNIQNNWRG-HCSVEDARATMELY 162


>gi|182438534|ref|YP_001826253.1| oligoribonuclease [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326779181|ref|ZP_08238446.1| Oligoribonuclease [Streptomyces cf. griseus XylebKG-1]
 gi|11133770|sp|P57667|ORN_STRGR RecName: Full=Oligoribonuclease
 gi|6277197|dbj|BAA86266.1| ORF1 [Streptomyces griseus]
 gi|178467050|dbj|BAG21570.1| oligoribonuclease [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326659514|gb|EGE44360.1| Oligoribonuclease [Streptomyces cf. griseus XylebKG-1]
          Length = 201

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 76/223 (34%), Gaps = 41/223 (18%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH 63
           R +  D E TGL   +D +IE+ A V   + +       + + P        PE + ++H
Sbjct: 4   RMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVRQMH 63

Query: 64  ---GITDEFLKD---KPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKD 116
              G+ DE         +   + +   +   E   A    ++   D GF+  +++ +   
Sbjct: 64  TASGLLDELAGGTTLADAEEQVLAYVREHVKEPGKAPLCGNSVGTDRGFLARDMRELEGY 123

Query: 117 PLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                  + ++  +ARR +P          + Y  + +    H AL D            
Sbjct: 124 LHYRIVDVSSVKELARRWYP----------RAYFNSPAKNGNHRALAD------------ 161

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                        E R+++E           +R K +  R++ 
Sbjct: 162 -------IRDSITELRYYREAVFVPQPGPDSERAKEIAARLSA 197


>gi|296450179|ref|ZP_06891940.1| exonuclease superfamily protein [Clostridium difficile NAP08]
 gi|296878560|ref|ZP_06902565.1| exonuclease superfamily protein [Clostridium difficile NAP07]
 gi|296260942|gb|EFH07776.1| exonuclease superfamily protein [Clostridium difficile NAP08]
 gi|296430367|gb|EFH16209.1| exonuclease superfamily protein [Clostridium difficile NAP07]
          Length = 345

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 7  MRKIVFDIETTGLDSKNDR------IIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEA 59
          ++++  D E    +SK+ R      II IGAV   + +K    F+  + P +  +  P  
Sbjct: 4  LKRVYIDFEMNMPNSKSKRAVFNSDIIAIGAVMYDEKTKNIDKFKSLIRPVSNEELYPHI 63

Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFN 88
           +L  I+ E LK  PS+  +  +F  +  
Sbjct: 64 QELTHISSEELKSAPSYEEVMRKFKKWLG 92


>gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
 gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
          Length = 956

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 32/146 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             NK   + FD ETTGL+     ++ I      D  K                       
Sbjct: 379 NLNKQTSVCFDTETTGLNPLTAELVGIAFSW--DAGK----------------------- 413

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G    F  +K     +  E   FF  ++ + +  N K+D+  +         D      
Sbjct: 414 -GFYLPFSDNKEEAQQLIEELRPFFENEDIQKVGQNLKYDIKVL------HKYDIEVRGP 466

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
           + DT+      +P  R++++ L + Y
Sbjct: 467 LFDTMLAHYLINPDMRHNMDVLAETY 492


>gi|325103277|ref|YP_004272931.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM
           12145]
 gi|324972125|gb|ADY51109.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM
           12145]
          Length = 181

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 68/186 (36%), Gaps = 18/186 (9%)

Query: 2   IRKNKMRKIVFDIETT--------GLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNG 52
           + K   + ++ D+E T        G++S    IIEIGA  L +   + + +  + + P  
Sbjct: 1   MAKQLDKILIVDLEATCWEDKVPTGMESD---IIEIGACLLDIQSGEISDSRGILVKPER 57

Query: 53  RKNSPEALKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            + S     L  IT + L +    F    +     ++ Q+  W A    +D      +  
Sbjct: 58  SELSKFCTSLTTITRQMLDEQAIPFKEACNILKKEYHSQSRAW-ASFGAYDQKQFQRQCG 116

Query: 112 RINKDPL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            +            + TL   ++K    +    +L     I +   + H  + D+  ++ 
Sbjct: 117 ALGIGNPMGPSHINVKTLFALKKKLAHEQGMAGALA-LLDIPLEG-THHRGVDDARNIAK 174

Query: 170 VYIKMM 175
           +   ++
Sbjct: 175 ILRWIL 180


>gi|271969793|ref|YP_003343989.1| hypothetical protein Sros_8604 [Streptosporangium roseum DSM 43021]
 gi|270512968|gb|ACZ91246.1| hypothetical protein Sros_8604 [Streptosporangium roseum DSM 43021]
          Length = 167

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 15/159 (9%)

Query: 30  GAVELLDYSKTNRTFQVF---LCPNGRKNSPEALKLHGITDEFL-----KDKPSFSSIFS 81
           G +    +   +     F   L P    + PEAL + G+  E L     +   +      
Sbjct: 10  GRMTGKAFEPVDPQIHTFYAELKPISEDHVPEALAVSGLDRETLIREGTEPSVAMKDAAG 69

Query: 82  EFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIID--TLSIARRKHPSSR 138
              +          A+   +D  ++     R     P   SR +D  TL  A+   P   
Sbjct: 70  WIREVCGNSTPVLAAYPLSYDWMWMYWYFMRFDGASPFGHSRCLDIKTLYAAKAGVPIGW 129

Query: 139 NDLNSLCKRYGITISHRSK-HGALLDSHLLSDVYIKMMV 176
                + K     +S R   H AL D+   +++   +M 
Sbjct: 130 ATKRQMPKHL---LSSRPHTHNALDDAIEQAELLQNLMA 165


>gi|167516618|ref|XP_001742650.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779274|gb|EDQ92888.1| predicted protein [Monosiga brevicollis MX1]
          Length = 182

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 54/172 (31%), Gaps = 15/172 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M      + +  D E  G +   D +  +  V        +     F+ P  R       
Sbjct: 1   MQVNRADKYVAIDCEMVGGEGSKDLLARVSLVNRDGDVLLD----TFVRPKERVLDYR-T 55

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           ++ G+  + L   PSF    ++       +N   + H+ K D+  +      +   P   
Sbjct: 56  EVSGVRKQDLLRAPSFEEAQAKVARLL--ENKVLVGHDLKHDMKVL------LLSHPKRH 107

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVY 171
           +R         +   + R  L  L     G  I     H ++ D+     +Y
Sbjct: 108 TRDTSQYEPFHKVAKTKRPGLRKLVHLVLGTRIQTGE-HSSVEDARATMALY 158


>gi|301111720|ref|XP_002904939.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262095269|gb|EEY53321.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 402

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 74/239 (30%), Gaps = 38/239 (15%)

Query: 11  VFDIE--TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             D+E   TG    NDR +   AV   D       F  ++ P  +       +L GIT  
Sbjct: 159 AIDVECVATG-SGTNDRDVARIAVVDEDEKVV---FDQYVKPT-KPIVSYLTQLTGITKS 213

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L+D P               + +  +  + K D+ ++        + P D     D   
Sbjct: 214 NLEDAPDLEEALVRLKAILPVE-SVIVGQSIKKDLEWLT------LQKPTDYKGEFDVAD 266

Query: 129 IARRKHPSSR-------NDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKMM----- 175
           + R    S+          L  + K   G  I   + H  ++D+     V+ K       
Sbjct: 267 LFRLPMQSTNGVVRYRYFSLRHVAKYLLGQDI-QEADHDPVIDARYAMKVFKKFRHLHEN 325

Query: 176 --VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT-------KEELDEHD 225
                + +    KT     F E    +  +S+ +  +   T  +         E  +H 
Sbjct: 326 PGRRDAVLQTLLKTPRTPSFAERYPVIDGVSM-RAPRKRSTSPSIRNANRAATEQAQHA 383


>gi|307154494|ref|YP_003889878.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
 gi|306984722|gb|ADN16603.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
          Length = 291

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 65/169 (38%), Gaps = 20/169 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF----QVFLCPNGRKNSPEALKLHGI 65
           ++ D ET G D  + ++IE+GAV    YS T +         +      +  +A  ++ I
Sbjct: 8   LIIDTETDG-DKDHPKVIEVGAVL---YSVTGQCMLSCGSSLI--TTDADINQAYWINKI 61

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E     P   + F  +           IAHNA FD   I A       D L      D
Sbjct: 62  PIEATHLCPQQQNYFLNWLQAAYVSADAIIAHNANFDKELITALTWAKKWDKLWLCTYKD 121

Query: 126 TLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                    P     + DL SL + YGI IS    H A+ D  LL +V+
Sbjct: 122 -----FELFPEQYNGKRDLISLSQFYGIGIS--CTHRAIDDCLLLKEVF 163


>gi|33519554|ref|NP_878386.1| oligoribonuclease [Candidatus Blochmannia floridanus]
 gi|77416670|sp|Q7VQP7|ORN_BLOFL RecName: Full=Oligoribonuclease
 gi|33517217|emb|CAD83599.1| oligoribonuclease [Candidatus Blochmannia floridanus]
          Length = 180

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 33/177 (18%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKL 62
            N+   I  D+E TGL+ + DRI+EI  +       T+    +    P      PE+  L
Sbjct: 1   MNEDNLIWIDLEMTGLNPERDRILEIATL------ITDNELSILSEGPVLTIYQPESQLL 54

Query: 63  ------------HGITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFI 106
                       +G+  E    K +          F       +++     +   D  F+
Sbjct: 55  LMDEWNTYTHSSNGLLKEVRSSKLNECDASILVLKFLKNWVPCKSSPMCGSSVAQDRRFL 114

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              +  +  +     R +D  +I        R DL +     G+ +     H AL D
Sbjct: 115 LKYMSEL--ESYFSYRYLDVSTIKELMF-RWRPDLKT-----GLQL--HKSHRALAD 161


>gi|118790162|ref|XP_318057.3| AGAP004759-PA [Anopheles gambiae str. PEST]
 gi|116122385|gb|EAA13240.3| AGAP004759-PA [Anopheles gambiae str. PEST]
          Length = 191

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 58/185 (31%), Gaps = 42/185 (22%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +    +  D+E TGLD + DRI+EI  +                 PN   N P+A+
Sbjct: 1   MSETSVQNLVWIDLEMTGLDVEKDRILEIACIVTDSKLNIIAK-----GPNIIINEPDAV 55

Query: 61  --------KLHGITDEFLKDKP---------SFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
                   K H  +   L +           +   +      +  E+      ++   D 
Sbjct: 56  LAGMNSWCKDHH-SKSGLIEAVKKSTYSVDQAERDVLDFVKKYCPERKCPMAGNSIYMDR 114

Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR-----YGITISHRSKH 158
            FI   +  +N+        + T+                LCKR     Y  +   +  H
Sbjct: 115 LFIMKYMPTLNEYLHYRVIDVSTVKE--------------LCKRWNQNVYNSSPPKKLAH 160

Query: 159 GALLD 163
            AL D
Sbjct: 161 RALDD 165


>gi|224120530|ref|XP_002330965.1| predicted protein [Populus trichocarpa]
 gi|222872757|gb|EEF09888.1| predicted protein [Populus trichocarpa]
          Length = 219

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 22/170 (12%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDY---SKTNRTFQVFLCPNGRKNSPEALKL 62
           KM  +  D+E TGL+++ DRI+EI  +    Y   S       +           E  + 
Sbjct: 38  KMPLVWIDLEMTGLNTEVDRILEIACIITDGYLTKSVEGPDLVIHQSKECLDRMGEWCQS 97

Query: 63  H----GITDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKF-DVGFINAELQRI- 113
           H    G+T++ L  K +      +  +F       +   IA N+ + D  F+   +  + 
Sbjct: 98  HHAASGLTNKVLGSKITERDAEKQVIEFVKRHVGTHTPLIAGNSVYVDFLFLKKYMPDLA 157

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                    +   +++  R +P  R                 +KH AL D
Sbjct: 158 GLFSHVVVDVSSVMALCMRWYPQDRRK----------APQKENKHRALDD 197


>gi|182412103|ref|YP_001817169.1| exonuclease RNase T and DNA polymerase III [Opitutus terrae PB90-1]
 gi|177839317|gb|ACB73569.1| Exonuclease RNase T and DNA polymerase III [Opitutus terrae PB90-1]
          Length = 228

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 38/181 (20%)

Query: 4   KNKMRKIVFDIE---TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             +      D E   T+G       ++E+G VE +       T      P G    PE  
Sbjct: 9   WTEQPIFFIDFEGNQTSG-------VLELGVVE-VHGGAIGATHTRLCRPTG-PVRPEDA 59

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---------ELQ 111
            LHG+    L D   F+  +  F  +   +     AH A  +   + A         +  
Sbjct: 60  ALHGLRTHVLADCAPFADEWETFARW--RERGPLAAHYAGVENALLKATWPYPRSSPDFA 117

Query: 112 RINKDPLDPSRIIDTLSIARRKHP--------------SSRNDLNSLCKRYGITISHRSK 157
           R  +  +D    IDT  +  + +P                +++L++L  +Y      R  
Sbjct: 118 RPGESVVDWGPWIDTGRLYAQLYPELGTGQLEALVAACGLKHELDALAAQY-CPPERRRY 176

Query: 158 H 158
           H
Sbjct: 177 H 177


>gi|291232871|ref|XP_002736377.1| PREDICTED: three prime repair exonuclease 1-like, partial
           [Saccoglossus kowalevskii]
          Length = 261

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 69/186 (37%), Gaps = 27/186 (14%)

Query: 7   MRKIVFDIETTGLDSKND----RIIEIGAVELLDYSKTNRTFQ----------VFLCPNG 52
              +  D+E TGL  ++D     I E+    +     T  + +          +      
Sbjct: 62  QTFVFLDLEATGL-PESDGTLPDITELAMTAIARQGMTGNSVKGAIPRIQDKLLLCLTPQ 120

Query: 53  RKNSPEALKLHGITDEFLKDKPSFS---SIFSEFWDFFNEQNAE--WIAH-NAKFDVGFI 106
           +  +P A K+ G++ + L+         ++      F   Q      ++H   +FD   +
Sbjct: 121 KDVTPTAEKMTGLSKQLLEKHCKRKMDLNVDGALRYFLRRQTPPVCLVSHAGDRFDFPVL 180

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            AEL +++    D    ID+L   +   P     L +LCKR+   +   + H A  D  +
Sbjct: 181 RAELDKVD-SVWDCIYTIDSLKFFQYYMPKQNRSLPNLCKRF---LGFETDHNAEGD--V 234

Query: 167 LSDVYI 172
              V +
Sbjct: 235 TGLVLL 240


>gi|227833883|ref|YP_002835590.1| putative oligoribonuclease [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454899|gb|ACP33652.1| putative oligoribonuclease [Corynebacterium aurimucosum ATCC
           700975]
          Length = 210

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 23/169 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCP---NGRKNSPEALKLH 63
           R +  D+E TGLD K   I+E+ AV    + +  +    + +        +      ++H
Sbjct: 10  RLVWIDLEMTGLDPKRHVIVEVAAVVTDAELNILDEGIDIVVHATEEELAQMDDFVTEMH 69

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINK 115
              G+  E  +   + +           +       A    ++   D  FI   + R++ 
Sbjct: 70  AKSGLDKEIRESAITIAEAEEAVLKLVEKHCDANHPAPLAGNSIATDRTFIREYMPRLDA 129

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  +ARR HP +  +                 H AL D
Sbjct: 130 ALHYRMIDVSTIKELARRWHPRAYYN----------QPDKGMAHRALQD 168


>gi|320168778|gb|EFW45677.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 234

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 64/212 (30%), Gaps = 35/212 (16%)

Query: 2   IRKNKMRKI-VFDIETTG---LDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKN- 55
           +     R + V D E         K   IIE   V L     +   +F  ++ P      
Sbjct: 6   LEPQSFRYLLVLDFEAVCDEVTRPKPQEIIEFPTVVLDTTTLEIVGSFHKYVRPVSHPIL 65

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE------------------------QN 91
           +P    L GIT + +  + +F  +F E   +                             
Sbjct: 66  TPFCTTLTGITQDMVSGQATFQEVFDEHLAWIQSFWKSLPPAANADADAASTASSSIPSE 125

Query: 92  AEWIAHNAKFDV---GFINAELQRINKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKR 147
           A   A     D      +  +L  + K  P    + I+       K+  S   + ++   
Sbjct: 126 APTWAFVTCGDWDLNRALPDQLAALGKKSPAPYRQWINIKKEFAVKYGVSPPGMTAMLDM 185

Query: 148 YGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             + +  R  H  + D   ++ V  +M+  G 
Sbjct: 186 LRLDLVGR-HHSGIDDCRNIAAVAKEMLRDGH 216


>gi|152981086|ref|YP_001352542.1| oligoribonuclease [Janthinobacterium sp. Marseille]
 gi|151281163|gb|ABR89573.1| oligoribonuclease protein [Janthinobacterium sp. Marseille]
          Length = 195

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 29/177 (16%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRK-NSP 57
           IR N+   +  D+E TGLD   DRIIE+  V              F +            
Sbjct: 15  IRPNEFNLVWVDMEMTGLDPDKDRIIEVAVVVTDANLNILGEGPVFAIHQSDEVLDGMDA 74

Query: 58  EALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
                HG       I    + +  + +++      +     +    +    D  F+   +
Sbjct: 75  WNKGTHGRSGLIDRIKASTVTEAEAETALIEFLKKYVPSGKSPMCGNTICQDRRFMVRGM 134

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH----RSKHGALLD 163
            ++  +     R +D             + L  LC+R+   + +      KH AL D
Sbjct: 135 PKL--EAFFHYRNLDV------------STLKELCRRWKPELVNGFKKHQKHTALAD 177


>gi|321463015|gb|EFX74034.1| hypothetical protein DAPPUDRAFT_16784 [Daphnia pulex]
          Length = 141

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 16/139 (11%)

Query: 10  IVFDIETTGLDSKND-RIIE--IGAVE---LLDYS-----KTNRTFQVFLCPNGRKNSPE 58
           + FD+ETTGL + +  +I E    AVE    L+       +      + + P+ R   PE
Sbjct: 3   VFFDLETTGLPAFHCPKITELSFCAVERHQFLNGQPKAMPRVTNRLNLCIYPS-RLVDPE 61

Query: 59  ALKLHGITDEFLKDKPSFSS-IFSEFWDFFN--EQNAEWIAHNA-KFDVGFINAELQRIN 114
           A     + +  L+ +  F   +F+  + F N  ++    IAHN   FD   + +E+ ++ 
Sbjct: 62  ATNKTKLDNYNLEHQSRFDEDVFNLIYSFLNRLKKPICLIAHNGYNFDFPILRSEIAKLG 121

Query: 115 KDPLDPSRIIDTLSIARRK 133
           K+        D+L I R+ 
Sbjct: 122 KELPGGIFCADSLIIFRKL 140


>gi|30387346|ref|NP_848425.1| hypothetical protein CfMNPVgpORF114 [Choristoneura fumiferana MNPV]
 gi|30270080|gb|AAP29896.1| unknown [Choristoneura fumiferana MNPV]
          Length = 232

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 60/205 (29%), Gaps = 43/205 (20%)

Query: 7   MRKIVFDIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQVFLCP-------NGRKNS 56
              +  D+ETTGL    +   +I E+  ++ +   +  R   V +C             S
Sbjct: 5   QTYVFLDLETTGLPKFQNNKTQITELS-LQCVSRKELLRPGAVRVCNKLTMCFEPTLSIS 63

Query: 57  PEALKLHGITDEFLKDKPSFS----SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQ 111
            EAL L  ++ E L  +P F          F           +A+N   FD   +   L+
Sbjct: 64  EEALALTQLSMENLNGQPKFDTKVVDCIESFLSLLASPVC-LVAYNGLSFDFPILYKHLK 122

Query: 112 RINKDPLDPSRI--------------------------IDTLSIARRKHPSSRNDLNSLC 145
                                                 +      R   P+    L  L 
Sbjct: 123 DNAFQLEVHCADAYHAMYAIIDGSGSTAMNRSKSGLVTVRQCPWKRGDRPARSFKLMDLY 182

Query: 146 KRYGITISHRSKHGALLDSHLLSDV 170
           K +   ++    H A  D  ++ ++
Sbjct: 183 KTHVTQLAGDKCHRAENDCSMMVEL 207


>gi|328717754|ref|XP_001946025.2| PREDICTED: ERI1 exoribonuclease 3-like [Acyrthosiphon pisum]
 gi|239793057|dbj|BAH72792.1| ACYPI003543 [Acyrthosiphon pisum]
          Length = 248

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 19/144 (13%)

Query: 8   RKIVFDIETTGLDSKN----DRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPE 58
           +  V D E T  +  +      IIE   +           +    F  ++ P       E
Sbjct: 48  KFFVLDFEATCDNGAHLLKPQEIIEFPCILVKFNMAKGGFEVVSIFHSYVKPIIHTVLTE 107

Query: 59  A-LKLHGITDEFLKDKPSFSSIFSEFWDF------FNEQNAEWIAH-NAKFDVGFINAEL 110
              +L G+T + + + P F  +F  F ++        ++ +  +   N      FI    
Sbjct: 108 YCTQLTGVTQDMVSNSPPFDDVFFNFCNWHNDHTNMGKEKSIIVTSGNWDIGNMFIEQC- 166

Query: 111 QRINKDPLDPSRIIDTLSIARRKH 134
            ++    +     + T    ++  
Sbjct: 167 -KLFPSTIKIPEFMCTWINIKKLF 189


>gi|289811457|ref|ZP_06542086.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
          Length = 70

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
          + D ET GL      I+EI +V+++D +  N      + P+ R  +P+A+ +H IT+  +
Sbjct: 4  IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58


>gi|225707966|gb|ACO09829.1| Interferon-stimulated 20 kDa exonuclease-like 2 [Osmerus mordax]
          Length = 330

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 14/171 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N ++ +  D E  G   K  R  E+    L+ Y   +  +  ++ P G   +    +  G
Sbjct: 155 NPLKYVAMDCEMVGTGPKG-RNSELARCSLVSYDG-DVMYDKYIKP-GNPVTDFRTRWSG 211

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRI 123
           IT   +    +F     E            I H    D   ++     R+ +D       
Sbjct: 212 ITWSHMAKAITFKEAKKEILKILA--GKVVIGHAIHNDFKALSYGHPARMTRDTSRIP-- 267

Query: 124 IDTLSIARRKHPS-SRNDLNSLCKR-YGITI-SHRSKHGALLDSHLLSDVY 171
              L   +   P      L  L K  +   I + R  H ++ D+    ++Y
Sbjct: 268 ---LLNKKAGFPEKGCASLKRLTKALFNRDIQTGRRGHSSVEDAKATMELY 315


>gi|171909847|ref|ZP_02925317.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Verrucomicrobium spinosum DSM 4136]
          Length = 200

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 11/170 (6%)

Query: 10  IVFDIETT----GLDSKND-RIIEIGAVELLDYS--KTNRTFQVFLCPNGRKN-SPEALK 61
           ++ D+E T    G   +++  IIEIGAV LLD    +T   F  F+ P      +P   K
Sbjct: 16  LIIDLEATCCDRGKVPRDEMEIIEIGAV-LLDGKTLETVSEFGTFIKPVRHPVLTPFCTK 74

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDP 120
           L  IT   +   P F    ++   +         +    +D G    +    +   P   
Sbjct: 75  LTTITQAEVDAAPMFPEALAKLKAWLEPYPDCMFSSWGAYDKGQFQLDCAFHDLPYPFSE 134

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           + +    + A  +    R  +        + +   + H  + D+  ++ +
Sbjct: 135 AHLNLKKAFAEARGLKKRPGMGQALGMLRLELEG-THHRGIDDARNMARI 183


>gi|74203812|dbj|BAE23119.1| unnamed protein product [Mus musculus]
          Length = 181

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 15/166 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D E  GL  +  R+  +    +++ +      +  ++ P G        ++ G+T +
Sbjct: 8   VAMDCEMVGLGPQ--RVSGLARCSIVNIHGAVL--YDKYIRPEGEITDYR-TQVSGVTPQ 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     F     E       +    + H+ K D   +  ++ +         R++  L 
Sbjct: 63  HMVRATPFGEARLEILQLL--KGKLVVGHDLKHDFNALKEDMSKYTIYDTSTDRLL--LH 118

Query: 129 IARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVY 171
            A+ ++  SR  L  LCKR     I  + R  H ++ D+    ++Y
Sbjct: 119 EAKLQY-YSRVSLRLLCKRLLHKNIQNNWRG-HCSVEDARATMELY 162


>gi|32476068|ref|NP_869062.1| exonuclease [Rhodopirellula baltica SH 1]
 gi|32446612|emb|CAD76447.1| conserved hypothetical protein-putative exonuclease [Rhodopirellula
           baltica SH 1]
          Length = 198

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 14/192 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIE-------IGAVELLDYSKTNRTFQVFLCPNGR 53
           M RK     +V D+E+T  D +     E       +  V++    +  +   + + P   
Sbjct: 12  MARKLDQ-ILVVDVESTCWDGEPPEGEESEIIEIGLCLVDVASQKRIGKH-SILVKPERS 69

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-- 111
             S    +L  +T E   D  + +         F  ++    A    +D        Q  
Sbjct: 70  TISEFCTELTTLTPEMFTDAGTLADAVKRLKKEFASKD-RLWASWGDYDRRQFERVCQSA 128

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +          + TL  A     +    L+    + G+T+   + H    D+  ++DV 
Sbjct: 129 GVGYPFGLTHLNVKTL-FAVSLGLNHEVGLDGAYNKLGMTMEG-THHRGDDDAWNIADVL 186

Query: 172 IKMMVGGSQINF 183
            +++    +I  
Sbjct: 187 CRLLSKSRKIAL 198


>gi|300932778|ref|ZP_07148034.1| oligoribonuclease [Corynebacterium resistens DSM 45100]
          Length = 215

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 58/172 (33%), Gaps = 29/172 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDY-----SKTNRTFQVFLCPNGRKNSPEALKL 62
           R +  D E TGLD     ++EI  +             +            +      K+
Sbjct: 18  RIVWVDCEMTGLDPDQHVLVEIAVIVTDANLNALAEGIDLVIHAT-DDELSRMDDFVTKM 76

Query: 63  H---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRIN 114
           H   G+T++  +   S +    +  ++  +     + A    ++   D  FI   +  +N
Sbjct: 77  HNNSGLTNQIKESSLSLAEAEQQVVEYIKQFVPLGRTAPLAGNSIATDRTFIARYMPELN 136

Query: 115 KDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                  R+ID  SI   ARR +P          + Y    S    H AL D
Sbjct: 137 --EYLHYRMIDVSSIKELARRWYP----------RVYNGQPSKGLAHRALAD 176


>gi|328787319|ref|XP_003250924.1| PREDICTED: ERI1 exoribonuclease 3-like, partial [Apis mellifera]
          Length = 241

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 15/125 (12%)

Query: 10  IVFDIETTGLDSKN---DRIIEI--GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
           +V D E T    +      IIE+   AV    +   N  F  ++ P      +P   +L 
Sbjct: 100 LVLDFECTCKKYEKIEPQEIIELPCAAVCTKSWEIVN-MFHEYIKPKVHPQLTPFCTQLT 158

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQRINKD 116
           GI  + + ++  FS +F +F ++  E        ++ ++     +D+ F+     ++   
Sbjct: 159 GIIQDMVDNESHFSEVFMKFCNWLEEHNYFKNGNDSAFVI-CGDWDLKFMLPAQCKLENI 217

Query: 117 PLDPS 121
                
Sbjct: 218 SFPTH 222


>gi|321460150|gb|EFX71195.1| hypothetical protein DAPPUDRAFT_327373 [Daphnia pulex]
          Length = 215

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 69/177 (38%), Gaps = 23/177 (12%)

Query: 10  IVFDIETTGLDSKN-DRIIE-----------IGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           + FD+ETTGL S +  RI E           IG         TNR   + + P+ R   P
Sbjct: 16  VFFDLETTGLPSDHPARITELNFCGVDRSQFIGCKAKKMPRVTNR-LNLCIDPS-RPIDP 73

Query: 58  EALKLHGITDEFLKDKPSFSS-IFSEFWDFFN--EQNAEWIAHN-AKFDVGFINAELQRI 113
            A  L  + +  L  +  F + + +    F +  ++    IAHN  KFD    NAE+ ++
Sbjct: 74  VATDLSKLDNANLGQQSKFDANVLNIIVSFLDRLQKLICLIAHNGTKFDFPIFNAEIAQL 133

Query: 114 NKDPLDPSRIIDTLSIARRKHP--SSRNDLNSLCKR-YGITISHRSKHGALLDSHLL 167
            K         D+L          +  +  N + +R Y       + H A  D  +L
Sbjct: 134 GKGFPQDVYCADSLETFGLLQGISAGPSKGNEIYQRIYKKKPE--TLHEAEADVKML 188


>gi|297191108|ref|ZP_06908506.1| exonuclease [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721767|gb|EDY65675.1| exonuclease [Streptomyces pristinaespiralis ATCC 25486]
          Length = 198

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 65/187 (34%), Gaps = 27/187 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL----LDY----SKTNRTFQVFLCPNGRKNSPEALKLH 63
            DIE  G       ++ +GA       +D          TF   L P      P+AL + 
Sbjct: 13  VDIEADGPIPGPYSMLSLGAAVAGRQDVDGYEPADPEKDTFYRELRPISPDFVPQALAVS 72

Query: 64  GITDEFLKDKPSFSSIF--------SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-N 114
           G+  E L  + S  +           E    +         + A +D  F+   L R   
Sbjct: 73  GLDRERLTAEGSEPAAAMAAFGVWVGEVCAAYGGAQPVMCGYPASYDWTFLYWYLLRFTG 132

Query: 115 KDPLDPSRIID--TLSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSD 169
             P   S  +D  TL   + + P     L ++ K      +  + R  H AL D+   ++
Sbjct: 133 ASPFGHSGCLDMKTLYATKARLP-----LRAVTKSAMPRELLSARRHTHHALDDAIEQAE 187

Query: 170 VYIKMMV 176
           ++  +MV
Sbjct: 188 LFSNLMV 194


>gi|225717126|gb|ACO14409.1| Oligoribonuclease, mitochondrial precursor [Esox lucius]
          Length = 207

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 30/174 (17%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELL---------DYSKTNRTFQVF--LCPNGRK 54
           K R +  D+E TGLD + D+IIE+  +                 N T ++   +    ++
Sbjct: 11  KQRMVWVDLEMTGLDIEKDQIIEMACIITDSELNVLAGGPNLIINTTDELLDGMDDWCKE 70

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAEL 110
           +   +    G+T      K +      EF  F  +           ++   D  F++  +
Sbjct: 71  HHGNS----GLTQAVRNSKITLQQAEYEFLSFIRQHTPPGQCPLAGNSVHADKKFLDKYM 126

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +           + T+  + RR  P          + Y +    ++ H AL D
Sbjct: 127 PQFMHHLHYRIIDVSTIKELCRRWFP----------EEYKLAPQKKASHRALDD 170


>gi|311896098|dbj|BAJ28506.1| putative oligoribonuclease [Kitasatospora setae KM-6054]
          Length = 200

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 24/169 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH 63
           R +  D E TGLD   D +IE+ A V   + +       V + P        PE + ++H
Sbjct: 4   RLVWIDCEMTGLDLDRDALIEVAALVTDSELNVLGEGVDVIIRPPAEALEGMPEVVRQMH 63

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINK 115
              G+ DE L D  + +        +  E            ++   D GF++ ++  +  
Sbjct: 64  TASGLLDE-LADGLTMAEAQERVLAYVREHVPEAGRTPLCGNSVATDRGFLSRDMPELEG 122

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + ++  +ARR +P +  +          +      H AL D
Sbjct: 123 HLHYRIVDVSSIKELARRWYPRAYYN----------SPQKGGNHRALAD 161


>gi|254417569|ref|ZP_05031307.1| exonuclease superfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196175667|gb|EDX70693.1| exonuclease superfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 191

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 14/182 (7%)

Query: 1   MIRKNKMRKIVFDIETT---GLDS--KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRK 54
           M RK     +V D+E T   G     +   IIEIG   L  +S +  +T  + + P    
Sbjct: 1   MSRKIDQ-ILVIDVEATCWQGKPPPGQESEIIEIGVCLLDCHSHSAVKTESMLVKPERST 59

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            S    +L  +T E +    SF+         +      W A   ++D      + Q   
Sbjct: 60  VSEFCTELTTLTQEQVDQGMSFAQACERLQKRYLSHQRVW-ASYGEYDKNQFQKQCQSFG 118

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS-HRSKHGALLDS----HLLSD 169
            +    SR I+  +     +   + ++  L   + + +S   + H  + D+     +LS 
Sbjct: 119 VEYPFDSRHINVKTWFALAYSLQK-EVGMLKALFLLKLSLQGTHHRGVDDAANIGRILSQ 177

Query: 170 VY 171
           + 
Sbjct: 178 LL 179


>gi|315652211|ref|ZP_07905206.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315485517|gb|EFU75904.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 339

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 51/206 (24%)

Query: 3   RKNKMRKIVFDIE----TTGLDSKND----RIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           + +    IV D+E      G +  N      IIEIGA++L    +T   F   + P   K
Sbjct: 6   KVDMDNYIVLDLEWNQSPNGREHSNKDLPFEIIEIGAIKLNSRLETVDEFHRVIKPTVYK 65

Query: 55  NSPEALKLH-----GITDEFLKDKPSFSSIFSEFWDFFNEQ------------NAEWI-- 95
                 K+H     GI  E  K    F    ++F++F                N + +  
Sbjct: 66  KIHF--KVHEVVQIGI-WELKKKGVPFVDAINDFFEFCEMDNKQKKKILCTWGNLDLVEL 122

Query: 96  -----AHNAK--FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                 +N +  F+  F   +LQ++       ++               R  L       
Sbjct: 123 QRNMKFYNVENKFEYPFFYYDLQKLFNIKFQNAQQ-------------ERIPLERAVNML 169

Query: 149 GITISHRSKHGALLDSHLLSDVYIKM 174
            I +  R  H A  D+     V  +M
Sbjct: 170 NIEVE-RPFHHAFDDACYTVKVMQRM 194


>gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila]
          Length = 893

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 30/139 (21%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ET+ LD  +  I+ I             +F     P      P    LH    + L
Sbjct: 321 AVDLETSSLDPFDCDIVGISV-----------SF----KPKEAYYIP----LHHRNAQNL 361

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            +K     +  +  +   +  A+ +  N KFD   +  +      +P+ P    DT+  A
Sbjct: 362 DEK----EVLKKLKEILEDPGAKIVGQNLKFDYKVLMVK----GVEPVPP--HFDTMIAA 411

Query: 131 RRKHP-SSRNDLNSLCKRY 148
               P   + +L+ L  ++
Sbjct: 412 YLIEPNEKKFNLDDLALKF 430


>gi|209522085|ref|ZP_03270737.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. H160]
 gi|209497475|gb|EDZ97678.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. H160]
          Length = 251

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 39/180 (21%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAV-------ELLDYSK--TNRTFQVFLCPNGRK 54
           ++ M  +  D+E TGL+   DRIIEI  V        +++      +++ +        K
Sbjct: 63  RSDMNLVWLDMEMTGLEPDTDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETL-----AK 117

Query: 55  NSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFIN 107
                   H   G+ D       S +   ++  +F  +      +    ++   D  F+ 
Sbjct: 118 MDEWNQNTHGRSGLIDRVKASTVSEADATAQIREFLGQYVPPGKSPMCGNSICQDRRFMA 177

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
             +  +  +     R +D             + L  LC+R+   I      R+ H AL D
Sbjct: 178 RWMPEL--ESFFHYRNLDV------------STLKELCRRWQPVIYKGFQKRAMHTALAD 223


>gi|255076225|ref|XP_002501787.1| predicted protein [Micromonas sp. RCC299]
 gi|226517051|gb|ACO63045.1| predicted protein [Micromonas sp. RCC299]
          Length = 595

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 21/163 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E    D     ++ +  V               + P G+    +   + G+T +  K
Sbjct: 170 VDCEMCETDQDPRALVGVSVVNEKGIVLLK----TLVKPPGKIVDYKTT-ITGLTAKDFK 224

Query: 72  D-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-LSI 129
               + + + ++  +F   Q    + H    D+  +            D   +IDT +  
Sbjct: 225 GITTTLADVQAKLREFVKPQ-TILVGHGLVHDLRALK----------FDHLPVIDTAMLF 273

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS--KHGALLDSHLLSDV 170
           + +  P S   L  LCKR  +  S R+   H ++ D+ +  ++
Sbjct: 274 SYKNLPRSTPGLADLCKRL-LDESMRAEGTHDSVEDAKMALEL 315


>gi|319639353|ref|ZP_07994104.1| oligoribonuclease [Neisseria mucosa C102]
 gi|317399537|gb|EFV80207.1| oligoribonuclease [Neisseria mucosa C102]
          Length = 185

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK----NSP 57
           + +N       D+E TGL+ ++DRIIE+  +             V++     +       
Sbjct: 1   MTQNANNLCWLDMEMTGLNPEHDRIIEVAMIITDSDLNVLAQSDVYVIHQSDELLDSMDE 60

Query: 58  EALKLHGIT--DEFLKDKP-SFSSIFSEFWDF----FNEQNAEWIAHNAKFDVGFINAEL 110
                HG T   + +++   + + +     DF      E++     ++   D  F+   +
Sbjct: 61  WNTATHGRTGLTQRVRESTLTEAEVEQNLLDFMSAWIPEKSTPMCGNSIHQDRRFMVKYM 120

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R+       +  + TL  +A+R +P       ++ K    ++  R  H AL D
Sbjct: 121 PRLEAYFHYRNLDVSTLKELAKRWNP-------AVAK----SVVKRGSHKALDD 163


>gi|260072659|gb|ACX30556.1| exonuclease I [uncultured SUP05 cluster bacterium]
          Length = 422

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 42/133 (31%), Gaps = 24/133 (18%)

Query: 57  PEALKLHGITDEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRIN 114
           PEA  + GI+ +  + K         +    F   N   + +N+ +FD  F    L R  
Sbjct: 4   PEACAVTGISPQDCEQKGVIEHEFIKKINSEFTTPNTCIVGYNSIRFDDEFTRYTLYRNF 63

Query: 115 KDPLDPSR-----IIDTLSIARRKHPSSR---------------NDLNSLCKRYGITISH 154
            DP            D L + R  +   +                 L+ L    GI   H
Sbjct: 64  IDPYAWHWKDGNTRWDILDVVRLCYALKKDNSLKWVHNEEGKPVFKLDQLSLANGIE--H 121

Query: 155 RSKHGALLDSHLL 167
            + H AL D    
Sbjct: 122 ANAHDALADVRAT 134


>gi|169641852|gb|AAI60471.1| MGC147218 protein [Xenopus (Silurana) tropicalis]
          Length = 254

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 60/178 (33%), Gaps = 11/178 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G      +I E+    +++Y   +  +  ++ P     +    +  GIT 
Sbjct: 59  KCVAIDCEMVGTGP-GGKISELARCSIVNYRG-DVVYDKYIKPE-LPIADYRTRWSGITK 115

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             LK+  SF +   E      ++    + H    D   +           +  +  I  L
Sbjct: 116 HSLKNAISFKTAQKEILKILKDKR--VVGHALHNDFRALKYFHP---HSQIRDTSKISLL 170

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITIS-HRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                    +   L +L     G  I   R+ H ++ D+    ++Y K++    +   
Sbjct: 171 KKNAGLPEKAGVSLKTLALNLLGKRIQVGRNGHSSVEDALASLELY-KLVEDQWEEEL 227


>gi|118404170|ref|NP_001072399.1| apoptosis enhancing nuclease [Xenopus (Silurana) tropicalis]
 gi|111307953|gb|AAI21603.1| hypothetical protein MGC147218 [Xenopus (Silurana) tropicalis]
          Length = 265

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 60/178 (33%), Gaps = 11/178 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G      +I E+    +++Y   +  +  ++ P     +    +  GIT 
Sbjct: 59  KCVAIDCEMVGTGP-GGKISELARCSIVNYRG-DVVYDKYIKPE-LPIADYRTRWSGITK 115

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             LK+  SF +   E      ++    + H    D   +           +  +  I  L
Sbjct: 116 HSLKNAISFKTAQKEILKILKDKR--VVGHALHNDFRALKYFHP---HSQIRDTSKISLL 170

Query: 128 SIARRKHPSSRNDLNSLC-KRYGITIS-HRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                    +   L +L     G  I   R+ H ++ D+    ++Y K++    +   
Sbjct: 171 KKNAGLPEKAGVSLKTLALNLLGKRIQVGRNGHSSVEDALASLELY-KLVEDQWEEEL 227


>gi|294676827|ref|YP_003577442.1| exonuclease family protein [Rhodobacter capsulatus SB 1003]
 gi|294475647|gb|ADE85035.1| exonuclease family protein [Rhodobacter capsulatus SB 1003]
          Length = 156

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 24/175 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG----RKNSPEALKL 62
           M  I  DIE     S     IEIG   L        T+   + P          P + ++
Sbjct: 1   MTPIFIDIEA---SSLTGWPIEIGLSRLSSLGI--ETWSCLIHPRPGWSEADWDPRSAEI 55

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           HGI  E L   P+   +            A  ++   +FD  ++   L+R  +       
Sbjct: 56  HGIAREQLHTAPAAEIVAEAVEARL---GAHVLSDCPEFDGKWLTMLLRRPVQLLHFDDA 112

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           + DT          +++ L +L             H A  D+  ++ V++++  G
Sbjct: 113 VSDT--FGAEALGRAQDLLATL----------PHPHRAGPDAEAMAQVWLELTQG 155


>gi|261420373|ref|YP_003254055.1| sporulation inhibitor KapD [Geobacillus sp. Y412MC61]
 gi|319768041|ref|YP_004133542.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y412MC52]
 gi|261376830|gb|ACX79573.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y412MC61]
 gi|317112907|gb|ADU95399.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y412MC52]
          Length = 206

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 11/171 (6%)

Query: 9   KIVFDIE-----T-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALK 61
            +  D E     T T  +     IIE+G V ++D     + F  ++ P      +     
Sbjct: 6   YLFLDFEFTMPETKTNPNGFCPEIIEVGLVAVVDDQIIGQ-FSSYVKPLRFPQLTERCKS 64

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
              IT E +    SF  + S    +  ++    +      D+  +    Q    +     
Sbjct: 65  FLNITQEQIDRGMSFYELVSLLRQYDRDRPTTVMTW-GSMDMKVLRENCQSARVEFPFTG 123

Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              D     +R   +     L    + YG   +    H AL D+     ++
Sbjct: 124 EHRDLAMEYKRFFGNKNQTALRKAVQEYGNE-AVGKAHCALDDAFTAYTIF 173


>gi|213161277|ref|ZP_03346987.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 146

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIK 173
           P  P   I T+ ++RR  P  +    +L K   +++        H AL D ++ + + I 
Sbjct: 4   PELPGEWICTMKLSRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLID 63

Query: 174 MMV 176
           +M 
Sbjct: 64  IMR 66


>gi|119026310|ref|YP_910155.1| DNA polymerase III [Bifidobacterium adolescentis ATCC 15703]
 gi|118765894|dbj|BAF40073.1| DNA polymerase III [Bifidobacterium adolescentis ATCC 15703]
          Length = 514

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 75/201 (37%), Gaps = 51/201 (25%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLD----------------------YSKTNRTFQVFLC 49
            DIETTG D     II++G  E ++                           ++   F  
Sbjct: 282 IDIETTGTDPARVYIIDVGF-EYMNMISPRPADAPAGYQYEQGYYEAGDAYGQSRLAFGV 340

Query: 50  P--NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF-----------FNEQNAEWIA 96
           P  N    +P  L L GI    ++ + S +   S F  F              +   ++A
Sbjct: 341 PAENAALGNPLILDLTGI---DVRTR-SVAEAASSFRLFDEWPAAQIGLLQRLEQQPYVA 396

Query: 97  HNAKFDVGFIN------AELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNSLCK 146
           HNA+F+  F        AE  R  K    D L  SR  D  SI   +HP   N L++  K
Sbjct: 397 HNARFEHSFFMLNVAGYAESYRAGKITIIDTLPMSRRWDEGSIPDDEHPYGNNTLDAYAK 456

Query: 147 RYG-ITISHRSKHGALLDSHL 166
           R G +  S   +H  L D+H+
Sbjct: 457 RQGALDESKSERHLGLEDTHI 477


>gi|298252856|ref|ZP_06976650.1| NAD-dependent DNA ligase [Gardnerella vaginalis 5-1]
 gi|297533220|gb|EFH72104.1| NAD-dependent DNA ligase [Gardnerella vaginalis 5-1]
          Length = 196

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 9/70 (12%)

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGAL 161
           + F+N             ++ +DT+  AR+ +P  ++  L+ L    G+   H ++H AL
Sbjct: 1   MRFLNE-----GFKTQLSNQYMDTMQFARKLYPELKHYSLSDLTDYLGL---HNNEHRAL 52

Query: 162 LDSHLLSDVY 171
            D     ++Y
Sbjct: 53  ADCIATKELY 62


>gi|303285898|ref|XP_003062239.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456650|gb|EEH53951.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 752

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 72/215 (33%), Gaps = 26/215 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIG---AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +  D E        ++ +E+    AV           +   + P             GIT
Sbjct: 344 VAIDCEMCYSGVGENKKLELARASAVGPDGAVI----YDKLVMPEEAITDYNTTHS-GIT 398

Query: 67  DEFLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            E ++   +    +  E  +    +    + H+ + D+  +                 +D
Sbjct: 399 AEQMRGVTTTLRDVQRELLELIAAE-TILVGHSLENDLKRLKMMHANC----------VD 447

Query: 126 TLS-IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGSQINF 183
           T++    ++ P  RN L+ L +++         H ++ D+    ++  +K + G     F
Sbjct: 448 TVALYPHKRGPPYRNKLSGLTEKFLGRKIQEGTHDSVADARATMELALLKFVFG---TGF 504

Query: 184 GFKTNE-DRFFKEEKKTVPNISLLKRDKPLFTRIT 217
           G  ++E    F+         +++ ++  +    +
Sbjct: 505 GEPSSEGGSVFEALTGAGKRCAVIDKEHVVRRLAS 539


>gi|27904977|ref|NP_778103.1| exonuclease I [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|32129519|sp|Q89A43|EX1_BUCBP RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
           Full=DNA deoxyribophosphodiesterase; Short=dRPase
 gi|27904375|gb|AAO27208.1| exodeoxyribonuclease I [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 481

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 80/206 (38%), Gaps = 23/206 (11%)

Query: 2   IRKN-KMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PE 58
           I+KN  +  + +D ET G +   D+  +   ++  +D++      ++F  P+      PE
Sbjct: 3   IQKNTSLTFLFYDYETFGKNPALDKPSQFSCIQTDIDFNIIGSIQEIFCYPSVDYLPDPE 62

Query: 59  ALKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116
           ++ + GI+ ++      +      + +  F + +   I +N   FD  F      R   +
Sbjct: 63  SVLITGISPKYTSLFGVNEFEFAKKIYSLFMKSDTCIIGYNNIYFDDEFTRNIFYRNFLN 122

Query: 117 PLDPSR--------IIDTLSIARRKHPSS----RNDLNSLCKRY-GITIS----HRSKHG 159
             + S         ++D L       P      RN+ NS+  R   I+++    H   H 
Sbjct: 123 SYEWSWKNGNSRWDMLDLLRACYVLRPEGINWPRNEDNSVSLRLSDISLANNIVHNVAHN 182

Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGF 185
           A  D +   ++  K++       F F
Sbjct: 183 ASSDVYATMNI-AKLIKQKKPKLFNF 207


>gi|239616633|ref|YP_002939955.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
 gi|239505464|gb|ACR78951.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
          Length = 896

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 29/140 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D+ET+ LD    +I+ I  V + D          ++  N   +  +A          
Sbjct: 324 ISIDLETSSLDPHEAKIVGIS-VAIKDGEG------FYIPVNHESSDWQA---------- 366

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                    +     +   +   + +  N KFD   +    ++   +P+ P    DT+  
Sbjct: 367 -----DEKQVLLRLKELLEDSGTKIVGQNLKFDYEIL----EKHGIEPVVP--HFDTMIA 415

Query: 130 ARRKHPSSRN-DLNSLCKRY 148
           A   +P SR  +L+ L  ++
Sbjct: 416 AYLLNPDSRRFNLDDLALKF 435


>gi|134094115|ref|YP_001099190.1| oligoribonuclease [Herminiimonas arsenicoxydans]
 gi|133738018|emb|CAL61063.1| oligoribonuclease [Herminiimonas arsenicoxydans]
          Length = 198

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 60/177 (33%), Gaps = 29/177 (16%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR---KNSP 57
           +R N+   +  D+E TGLD  ND IIEI  V    + +         +  +     K   
Sbjct: 18  VRPNEFNLVWLDMEMTGLDCDNDCIIEIAVVVTDAELNIIGEGPVFAIHQSDETLDKMDA 77

Query: 58  EALKLHGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
                HG +          + +  +   +      +  +  +    ++   D  F+   +
Sbjct: 78  WNKGTHGRSGLIERVKASTVSEAQAEEELIEFLKKYVPKGKSPMCGNSICQDRRFMARGM 137

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
            ++  +     R +D             + L  LCKR+   ++       KH AL D
Sbjct: 138 PKL--EAFFHYRNLDV------------STLKELCKRWKPELASGFKKHQKHTALAD 180


>gi|329914413|ref|ZP_08276114.1| Oligoribonuclease [Oxalobacteraceae bacterium IMCC9480]
 gi|327545130|gb|EGF30416.1| Oligoribonuclease [Oxalobacteraceae bacterium IMCC9480]
          Length = 201

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 63/183 (34%), Gaps = 41/183 (22%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R N+   +  D+E TGLD + DRIIE+  V       T+    +               
Sbjct: 21  LRTNEFNLVWLDMEMTGLDPETDRIIEVAVV------VTDSNLNILGQGPVFAIHQSDAA 74

Query: 62  LHGITDE-----------------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
           L G+ +                   + +  + +++ +   D+     +    ++   D  
Sbjct: 75  LDGMDNWNKGTHGRSGLIERVKASTVTEADAEAALIAFLKDYVPAGKSPMCGNSICQDRR 134

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGA 160
           F+   + ++  +     R +D             + L  LCKR+   ++       KH A
Sbjct: 135 FMARGMPKL--EAFFHYRNLDV------------STLKELCKRWRPELASGFKKHQKHTA 180

Query: 161 LLD 163
           L D
Sbjct: 181 LAD 183


>gi|296491911|ref|YP_003662378.1| hypothetical protein XNC1_p0095 [Xenorhabdus nematophila ATCC
           19061]
 gi|289176798|emb|CBJ92963.1| Ycg4D (fragment) [Xenorhabdus nematophila ATCC 19061]
          Length = 181

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 13/142 (9%)

Query: 22  KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFS 81
           + D++IE+   ++      N      L P   K SP A+ +HGI++  L ++P +  I  
Sbjct: 10  ERDQVIELAVTDIWGDVLLN----TRLWPT-VKISPNAMDVHGISEADLTNEPMWPQIAP 64

Query: 82  EFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRN 139
                 + +    +  N+ FD   +              +   ++  +++A     S+  
Sbjct: 65  ALAQLLSGR--HVVIFNSSFDSRLLRQTAGAFGDYMPWWEEKNLLCAMTLASDAFGSTNR 122

Query: 140 ----DLNSLCKRYGITISHRSK 157
                L     + G+    R+ 
Sbjct: 123 HGTISLADATYQAGVVWKGRAH 144


>gi|238750960|ref|ZP_04612457.1| Exonuclease RNase T and DNA polymerase III [Yersinia rohdei ATCC
           43380]
 gi|238710874|gb|EEQ03095.1| Exonuclease RNase T and DNA polymerase III [Yersinia rohdei ATCC
           43380]
          Length = 180

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 62/188 (32%), Gaps = 31/188 (16%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIET+G       ++ IGA  +      +  F   L P+     PEAL + G   +
Sbjct: 7   FVSVDIETSGPVPGLFSLLSIGACLVHA---PDVRFYAELKPDCTGFDPEALAVTGFNLQ 63

Query: 69  FLKD-KPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRI-NKDPL--- 118
            L     + +    +   +        Q   +   NA FD  FIN    +    +P    
Sbjct: 64  ALATTGIAPADAMLQLSTWLTSHLQPSQKPVFTGLNAPFDWSFINYYFHKYTGNNPFGFS 123

Query: 119 -------DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                         T S  +    + R           ++   R  H AL D+   ++++
Sbjct: 124 ALDIKAYFMGATGCTWSETKSSMMTQR-----------LSAKGRPSHNALDDALFQAELF 172

Query: 172 IKMMVGGS 179
             M   GS
Sbjct: 173 ALMQNKGS 180


>gi|290958841|ref|YP_003490023.1| hypothetical protein SCAB_44151 [Streptomyces scabiei 87.22]
 gi|260648367|emb|CBG71478.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 201

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 71/203 (34%), Gaps = 35/203 (17%)

Query: 9   KIVFDIE-TT---------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SP 57
            ++FD+E TT             +   I++IGA+ L +      ++   + P      SP
Sbjct: 4   FVIFDLEFTTWPGAMEQHWSGPGRLREIVQIGALRLNEEYAVVDSYDTLVRPVVNPVLSP 63

Query: 58  EALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAE 109
               L GI  + + +D  + +    +F  F   Q       +   +  N    +G+  A 
Sbjct: 64  YFTTLTGIGQQAVDRDGLAPARALGDFLAFCQGQSVFSYGNDMVVVGEN----IGWARAR 119

Query: 110 LQRINKDPLDPS-----RIIDTLSIARRKHPSSRNDLNSLCKRYGITISH--RSKHGALL 162
            + I    L P        ++ ++ A     S R     L K  G+        +H AL 
Sbjct: 120 GEEIGPSALTPGFVNLRPWLNAVAPATAGVNSGR-----LWKALGLPRPGVPGDEHAALF 174

Query: 163 DSHLLSDVYIKMMVGGSQINFGF 185
           D H ++     +   G  +  G 
Sbjct: 175 DCHSIALALRHLAGRGVVLPDGL 197


>gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301]
          Length = 958

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 44/153 (28%)

Query: 6   KMRKIV----------FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           ++R++V          FD ETTG D  NDRI+ +              F+ +  P   K+
Sbjct: 375 QLREVVAAVGRYPEFCFDTETTGFDIFNDRIVGLSLA--------VEPFKAWYVPFLEKD 426

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           +PE  ++       ++  P F     +            I  N KFD+  +    +R+  
Sbjct: 427 TPEYAEI-------VR--PLFED--EKIAK---------IGQNIKFDLMVL----RRLGI 462

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                 R+ DT+ +     P SR+++N+L ++Y
Sbjct: 463 TI--RGRMYDTMILHYLLDPESRHNMNALAEKY 493


>gi|303286277|ref|XP_003062428.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455945|gb|EEH53247.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 186

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 57/173 (32%), Gaps = 16/173 (9%)

Query: 10  IVFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I  D E  G+     R I+   +V   D +    TF   + P           + G+  +
Sbjct: 13  IALDCEMVGVGEDGRRSILARVSVVNEDGNVVLDTF---VAPTEHVTDYR-TAVSGVRAQ 68

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDTL 127
            L+  P F  I  +  D    +    + H  K D+  +  +  +R  +D      +   L
Sbjct: 69  DLRGAPPFKEIQRKMADIL--RGRILVGHALKNDLRALLLDHPRRATRDTATYRPLTRPL 126

Query: 128 SIARRKH------PSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIK 173
               R              L  LC R  G+ I     H ++ D+     +Y K
Sbjct: 127 RSRERAQADGIARGRGSRSLKELCARELGLEIQAGE-HSSVDDARAALLLYQK 178


>gi|56421469|ref|YP_148787.1| sporulation inhibitor KapD [Geobacillus kaustophilus HTA426]
 gi|56381311|dbj|BAD77219.1| inhibition of the KinA pathway to sporulation [Geobacillus
           kaustophilus HTA426]
          Length = 206

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 11/171 (6%)

Query: 9   KIVFDIE-----T-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALK 61
            +  D E     T T  +     IIE+G V ++D     + F  ++ P      +     
Sbjct: 6   YLFLDFEFTMPETKTNPNGFCPEIIEVGLVAVVDDQIIGQ-FSSYVKPLRFPQLTERCKS 64

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
              IT E +    SF  + S    +  E+    +      D+  +    Q    +     
Sbjct: 65  FLNITQEQIDRGMSFYELVSLLRQYDRERPTTVMTW-GSMDMKVLRENCQSAQVEFPFTG 123

Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              D     +R   +     L    + YG   +    H AL D+     ++
Sbjct: 124 EHRDLAMEYKRFFGNKNQTALRKAVQEYGNE-AVGKAHCALDDAFTAYTIF 173


>gi|16330775|ref|NP_441503.1| hypothetical protein slr1959 [Synechocystis sp. PCC 6803]
 gi|1653268|dbj|BAA18183.1| slr1959 [Synechocystis sp. PCC 6803]
          Length = 827

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 24/152 (15%)

Query: 41  NRTFQVFLCP-NGRKNSPEALKLHG--------ITDEFLKDKP------SFSSIFSEFWD 85
           ++    F+    G +   E   ++         + DE L D+           +   FW 
Sbjct: 2   DKPSSFFVVDSEGSQILREICIINHCGEVVYEALVDEVLADRAQGLKVFPLKQVLENFWR 61

Query: 86  FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSL 144
                    I H A  D   +     ++       S    T+ +A+ K+P  S   L  L
Sbjct: 62  I--THGHLVIFHYADHDCRVLRNSCLQVGIPWRPISTQ-CTIELAKEKYPGLSSYSLEFL 118

Query: 145 CKRYGITIS-----HRSKHGALLDSHLLSDVY 171
            K++ + +        S H A  D+     +Y
Sbjct: 119 SKKFFLKVEGKYFNQESAHRARYDALFTHQLY 150


>gi|322788644|gb|EFZ14245.1| hypothetical protein SINV_00413 [Solenopsis invicta]
          Length = 189

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 24/177 (13%)

Query: 1   MIRKNK-MRKIV-FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS- 56
           MIR ++    IV  D+E TGLD   D I+EI   V   + +  +    + +  +      
Sbjct: 11  MIRASRSDHYIVWIDLEMTGLDVDKDHILEIACLVTDKNLNVISEDLNIVIHQSDIILEN 70

Query: 57  -----PEALKLHGITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFIN 107
                 E     G+T        S         +F      E++      +   D  F++
Sbjct: 71  MNDWCKENHTKTGLTQNSRSSTVSLEEAEKMVLNFLKKYTLERSCPLAGSSVYMDRFFLH 130

Query: 108 AELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  +N+        + T+  IARR +P   N +    K+          H AL D
Sbjct: 131 KYMPLVNEYLHYRIIDVSTVKEIARRWNPGVLNSMPK--KKLN--------HRALDD 177


>gi|149690751|ref|XP_001503216.1| PREDICTED: similar to Interferon-stimulated gene 20 kDa protein
           (Promyelocytic leukemia nuclear body-associated protein
           ISG20) (Estrogen-regulated transcript 45 protein) [Equus
           caballus]
          Length = 171

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 11/164 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E  GL    +    +    L+D   T   +  F+ P+G        ++ G+T   
Sbjct: 8   VAMDCEMVGLGPFGES--GLARCSLVDLHGTV-LYDKFIQPDGEIVDYR-TRVSGVTPRH 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++    F+    E       +    + H+ K D   +   +           R    L  
Sbjct: 64  MEKATPFTEARQEILQLL--RGKLVVGHDLKHDFKALKESMDGYAIYDTSTDR---LLWR 118

Query: 130 ARRKHPSSRNDLNSLCKRY-GITISH-RSKHGALLDSHLLSDVY 171
             +     R  L  L +R  G  I + RS H ++ D+    ++Y
Sbjct: 119 KAKLQNCRRVSLRVLSERLLGWHIQNSRSGHSSVEDARATMELY 162


>gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136]
          Length = 971

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 36/139 (25%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ET GLD  + R++ I   +   +       F +   P  R             DE L
Sbjct: 399 FDTETDGLDPLSARMLGIAFSIAPHEGC----YFHI---PEER-------------DEHL 438

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDPLDPSRIIDTLSI 129
                   +  E   F +   AE I HN KFD+  F+   ++             DT+ +
Sbjct: 439 A-------VLKEVKTFLSTSKAEKIGHNLKFDLRVFLAHGIEVAG-------PFFDTMLV 484

Query: 130 ARRKHPSSRNDLNSLCKRY 148
                P  R+ ++ L +RY
Sbjct: 485 HALVEPDQRHGMDYLSERY 503


>gi|10177611|dbj|BAB10958.1| unnamed protein product [Arabidopsis thaliana]
          Length = 782

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 80/223 (35%), Gaps = 28/223 (12%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D E    +  +  ++ +GAV+  D       F   + P+ +        + G+T 
Sbjct: 144 RMLSIDCEMVTCEDGSQALVRVGAVD-RDLKVVLDKF---VKPD-KPVIDYKTDITGVTA 198

Query: 68  EFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           E L+    S + I  +   F +      + H    D+  +           +D +R+IDT
Sbjct: 199 EDLERATLSVADIQKKLRRFLSV-GTILVGHGLHNDLQVLR----------IDHARVIDT 247

Query: 127 LSIARRKH--PSSRNDLNSLCK---RYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
             +        + R  LN+LCK   R  + +   + H  + D+     + +  +  G+  
Sbjct: 248 SYVFEFVDAPKTQRPSLNNLCKASMRQEVRMDG-AAHNCVHDAAAAMKLVLAAVEKGAAT 306

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD---KPLFTRITKEEL 221
               +  E+    E+++        K       +   +  EEL
Sbjct: 307 L--IQPTEEMMVAEKRRQEARQEAGKAQLFLHKIPHDVPSEEL 347


>gi|224083100|ref|XP_002189554.1| PREDICTED: REX2, RNA exonuclease 2 homolog (S. cerevisiae)
           [Taeniopygia guttata]
          Length = 232

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEAL---KL 62
            R +  D+E TGLD + D+I+E+   +   D +       + +         ++    + 
Sbjct: 36  QRMVWVDLEMTGLDVEKDQILEMACLITDCDLNVLAEGPNLIINQPDEVLESKSEWCKEH 95

Query: 63  H---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
           H   G+T    + K S      EF  F  +Q          ++   D  F++  + +  +
Sbjct: 96  HGKSGLTKAVKESKISLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQFMR 155

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P          + Y       + H AL D
Sbjct: 156 HLHYRIIDVSTVKELCRRWYP----------EEYEFAPKKAASHRALDD 194


>gi|322709924|gb|EFZ01499.1| RNA exonuclease 4 [Metarhizium anisopliae ARSEF 23]
          Length = 319

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 53/170 (31%), Gaps = 19/170 (11%)

Query: 8   RKIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + +  D E  G+        +  I  V+          +  ++ P  R        + G+
Sbjct: 133 KYVGLDCEMVGVGQGGHESALARISLVDFHGRQI----YDSYVKPRERVTDWR-TAVSGV 187

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +   ++    F  +  E +D    +    + H+ K D+  +             P  I D
Sbjct: 188 SQREMRFAREFEEVQREVYDII--EGRILVGHDIKHDLDALKLSH--------PPRDIRD 237

Query: 126 TLSIA--RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           T      ++     +  L  L +    T      H +  D+ +   ++ K
Sbjct: 238 TAKHHAFKKYGHGRKPSLRVLARELLATEIQEGPHSSTEDARVTMLIFRK 287


>gi|300681549|emb|CBH32646.1| exonuclease, putative [Triticum aestivum]
          Length = 283

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 26/186 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDR-----IIEIGAVELLDYSKTN-RTFQVFLCPNGRK 54
           M  + K   + FD+ET    S  D      ++E GA+ +         ++   + P    
Sbjct: 1   MATEAKEEMVFFDVETAAAPSPTDASTQWWLLEFGAILVCPRRLVELSSYSTLIRPG--- 57

Query: 55  NSPEAL--KLHGITDEFLKDKPSFS----SIFSEFWDFFNEQNAEWIAHN-AKFDVGFIN 107
             P A+  +  G  D  L      +     +  + +   + +   W  HN  +FD   + 
Sbjct: 58  -DPAAVSRRFSG--DPALSAAFRAAPPFADVADDIFALLHGR--VWAGHNIRRFDCHRVR 112

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSH 165
                  +   +P  ++D+LS+  +       DL   +L   +GI    +  H +L D  
Sbjct: 113 DAFAAAGRAAPEPVAVVDSLSVLAQGFGRRAGDLKMATLAAYFGI---GKQTHRSLDDVR 169

Query: 166 LLSDVY 171
           +  +V 
Sbjct: 170 MNLEVL 175


>gi|331002523|ref|ZP_08326041.1| hypothetical protein HMPREF0491_00903 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410339|gb|EGG89773.1| hypothetical protein HMPREF0491_00903 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 331

 Score = 56.4 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 61/188 (32%), Gaps = 27/188 (14%)

Query: 9   KIVFDIE----TTGLDSKND----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            IV D+E      G +  N      IIEIGA++L    +T   F   + P   K      
Sbjct: 4   YIVLDLEWNQSPNGREYSNKDLPFEIIEIGALKLNSRLETVDEFHRVIKPTVYK--KMHF 61

Query: 61  KLH-----GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQ 111
           K+H     GI  E  K    F     +F++F    N              D+  +   ++
Sbjct: 62  KVHEVVQIGI-GELKKKGVPFVEAIRDFFEFCELDNPEKKKILCTW-GNLDLVELQRNMK 119

Query: 112 RINKDPLDPSR--IIDTLSIARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHL 166
               +          D   +   ++P+   D   L       GI  + R  H A  D+  
Sbjct: 120 FYGVENKFDYPLFYYDIQKLFNIRYPNGEQDRIPLERAVNMLGIE-TRRPFHHAFDDAFY 178

Query: 167 LSDVYIKM 174
              V   M
Sbjct: 179 TVKVLQNM 186


>gi|225077243|ref|ZP_03720442.1| hypothetical protein NEIFLAOT_02298 [Neisseria flavescens
           NRL30031/H210]
 gi|224951387|gb|EEG32596.1| hypothetical protein NEIFLAOT_02298 [Neisseria flavescens
           NRL30031/H210]
          Length = 230

 Score = 56.4 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK----NSP 57
           + +N       D+E TGL+ ++DRIIE+  +             V++     +       
Sbjct: 46  MTQNANNLCWLDMEMTGLNPEHDRIIEVAMIITDSDLNVLAQSDVYVIHQSDELLDGMDE 105

Query: 58  EALKLHGIT--DEFLKD-KPSFSSIFSEFWDF----FNEQNAEWIAHNAKFDVGFINAEL 110
                HG T   + +++ K + + +     DF      E++     ++   D  F+   +
Sbjct: 106 WNTATHGRTGLTQRVRESKLTEAEVEQNLLDFMSAWIPEKSTPMCGNSIHQDRRFMVKYM 165

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +       +  + TL  +A+R +P       ++ K    ++  R  H AL D
Sbjct: 166 PHLEAYFHYRNLDVSTLKELAKRWNP-------AVAK----SVVKRGSHKALDD 208


>gi|330897776|gb|EGH29195.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
          japonica str. M301072PT]
          Length = 50

 Score = 56.4 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 1  MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFL 48
          M  +N   R IV D ETTG+      RI+EIG VEL+    T R F V+L
Sbjct: 1  MALQNLDNRSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYL 50


>gi|238026568|ref|YP_002910799.1| oligoribonuclease [Burkholderia glumae BGR1]
 gi|237875762|gb|ACR28095.1| Oligoribonuclease (3'-5' exoribonuclease) [Burkholderia glumae
           BGR1]
          Length = 202

 Score = 56.4 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 61/176 (34%), Gaps = 31/176 (17%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAV-------ELLDYSK--TNRTFQVFLCPNGRK 54
           +N++  +  D+E TGL+  +DRIIEI  V       + ++      +++ +        K
Sbjct: 15  RNELNLVWLDMEMTGLNPDSDRIIEIAVVVTNSTLDKAVEGPVLAIHQSDETL-----AK 69

Query: 55  NSPEALKLHG----ITD---EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
                   HG    I       + +  + + I +    + +   +    ++   D  F+ 
Sbjct: 70  MDAWNQSTHGRSGLIDRVRASTVSEAAAAAQIEAFLAQYVSPGKSPMCGNSICQDRRFMA 129

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  + +     +  + TL    R+   +                 R+ H AL D
Sbjct: 130 RWMPELERFFHYRNLDVSTLKELCRRWQPAVYK----------GFQKRAMHTALAD 175


>gi|158296273|ref|XP_557337.3| AGAP006662-PA [Anopheles gambiae str. PEST]
 gi|157016432|gb|EAL40132.3| AGAP006662-PA [Anopheles gambiae str. PEST]
          Length = 339

 Score = 56.4 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 19/140 (13%)

Query: 9   KIVFDIETTGLDSKND---RIIEIGAVEL---------LDYSKTNRTFQVFLCPNGRKNS 56
            + FD+ETTGL        +I E+  V            +  +      +   P+ R  +
Sbjct: 7   FVFFDLETTGLPEYEHFRTKITELSMVACAREHLLEASTEPPRVTHKLSLCFNPH-RMIT 65

Query: 57  PEALKLHGITDEFLKDKPSFS----SIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQ 111
             + +  G+ ++ L+ +  F      +   F +   ++    +AHN  +FD   +   L 
Sbjct: 66  LGSSQATGLYNDLLEKEAKFDANAGEMVKLFLERL-QKPVCLVAHNGQRFDFILLKQHLL 124

Query: 112 RINKDPLDPSRIIDTLSIAR 131
           RI+         +D+L   R
Sbjct: 125 RIDVALPGDLYCVDSLPAFR 144


>gi|56478238|ref|YP_159827.1| hypothetical protein ebA4923 [Aromatoleum aromaticum EbN1]
 gi|56314281|emb|CAI08926.1| hypothetical protein ebA4923 [Aromatoleum aromaticum EbN1]
          Length = 244

 Score = 56.4 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 64/202 (31%), Gaps = 37/202 (18%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R ++ + E TGLD    R++ +GA+ +         +F   L P+               
Sbjct: 74  RYVIVNTEATGLDLDAARLLAVGAIAVDGGLLSPAASFYARLEPDP-------------- 119

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNA-EWIAHNAKFDVGFINAEL-QRINKDPLDPSRII 124
                         +   +      A   +  NA F+   +   L + +   P      +
Sbjct: 120 -------------ATALINLLTFSGAGPVVVFNAGFNRTLLERALGEHLGIKPEWTWLDL 166

Query: 125 DTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             L  A   +       L    K  GI    R  H AL D+  ++ + +     G  +  
Sbjct: 167 HWLLPALYGELIDRPARLADWMKALGIETFQR--HHALGDAWAIAQLMLA--AQGRALAL 222

Query: 184 GFKTNEDRFFKEEKKTVPNISL 205
           G  T   R   E +++  ++  
Sbjct: 223 GLNTA--RSLAELERSYRHLRR 242


>gi|58042842|ref|NP_932728.2| hypothetical protein CFDNVgORF119 [Choristoneura fumiferana DEF
           MNPV]
 gi|58013200|gb|AAQ91735.2| unknown [Choristoneura fumiferana DEF MNPV]
          Length = 230

 Score = 56.4 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 58/212 (27%), Gaps = 45/212 (21%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND---RIIEIG--AVELLDYSKTNRTFQ--VFLCPNGR 53
           M   N       D+ETTGL    +   +I E+    V   +     R             
Sbjct: 1   MATVNT--YAFLDLETTGLPKLQNNQTQITELSLQCVTRKELLGAARVCNKLTLCFEPTV 58

Query: 54  KNSPEALKLHGITDEFLKDKPSFS----SIFSEFWDFFNEQNAEWIAHN-AKFDVGFINA 108
             S +A  L  +  E L+ +P F     ++   F    +      +A+N   FD   +  
Sbjct: 59  DVSEQASALTQLNAENLRGQPQFDKRTVALIESFLALLSPPVC-LVAYNGFAFDFPILYK 117

Query: 109 ELQRINKDPLDPSRI--------------------------IDTLSIARRKHPSSRNDLN 142
            L+                                      +      R   P     L 
Sbjct: 118 HLKDNGFAGAVHCSDAYHALFAILDGSGPPTMKRSKSGTVTVKLCPWQRGARPKQSYKLI 177

Query: 143 SLCKRY-GITISHRSKHGALLDSHLLSDVYIK 173
            L KR+ G  +     H A  D  ++  +  K
Sbjct: 178 DLYKRHVGGNVEG---HRAEDDCAMMMRLVQK 206


>gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025339|ref|YP_001933111.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
 gi|6166143|sp|P74933|DPO1_TREPA RecName: Full=DNA polymerase I; Short=POL I
 gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189017914|gb|ACD70532.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
          Length = 997

 Score = 56.4 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 65/200 (32%), Gaps = 43/200 (21%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN----------------GR 53
           + FD ET GL   + R++         + +    +   + P+                  
Sbjct: 393 VAFDCETDGLHPHDTRLVGFSIC----FQEAEAFYVPLIVPDVSLHTESTQCTCARSTNV 448

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           +   E  + HG++   ++D     ++  +    +N++    + HN KFD   ++    R 
Sbjct: 449 ETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMH----RA 504

Query: 114 NKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRY--------------GITISHRSKH 158
                    I DT+  A    P      ++ L   +              G T +H    
Sbjct: 505 GVFEHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQTFAHVPYE 564

Query: 159 GAL----LDSHLLSDVYIKM 174
            A+     D+ +   +Y  +
Sbjct: 565 CAVRYAAEDADITFRLYHYL 584


>gi|1633576|gb|AAB17467.1| similar to proofreading 3'-5' exonuclease and polymerase [Treponema
           pallidum]
          Length = 997

 Score = 56.4 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 65/200 (32%), Gaps = 43/200 (21%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN----------------GR 53
           + FD ET GL   + R++         + +    +   + P+                  
Sbjct: 393 VAFDCETDGLHPHDTRLVGFSIC----FQEAEAFYVPLIVPDVSLHTESTQCTCARSTNV 448

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           +   E  + HG++   ++D     ++  +    +N++    + HN KFD   ++    R 
Sbjct: 449 ETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMH----RA 504

Query: 114 NKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRY--------------GITISHRSKH 158
                    I DT+  A    P      ++ L   +              G T +H    
Sbjct: 505 GVFEHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQTFAHVPYE 564

Query: 159 GAL----LDSHLLSDVYIKM 174
            A+     D+ +   +Y  +
Sbjct: 565 CAVRYAAEDADITFRLYHYL 584


>gi|187477876|ref|YP_785900.1| oligoribonuclease [Bordetella avium 197N]
 gi|123515337|sp|Q2L2P5|ORN_BORA1 RecName: Full=Oligoribonuclease
 gi|115422462|emb|CAJ48987.1| oligoribonuclease [Bordetella avium 197N]
          Length = 181

 Score = 56.4 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 59/174 (33%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N+ R +  D+E TGLD + +RIIE+  V             V +  +   +  EA+ 
Sbjct: 1   MAANENRLVWLDMEMTGLDPEKERIIEVAVVVTEPDLTVVAEGPVLVV-HQSDSVLEAMD 59

Query: 62  -----LHG----ITD---EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
                 HG    I       L +  +   +      +     +    +    D  F+ A 
Sbjct: 60  NWNKSTHGKSGLIDKVRASTLTEAQAEQQLIDFLSQYVPAGKSPLCGNTISQDRRFMFAY 119

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + +     +  + TL    R+   +             +   +S+H AL D
Sbjct: 120 MPNLERFFHYRNLDVSTLKELARRWAPAVYK----------SFEKKSRHEALAD 163


>gi|260682950|ref|YP_003214235.1| putative exonuclease [Clostridium difficile CD196]
 gi|260686548|ref|YP_003217681.1| putative exonuclease [Clostridium difficile R20291]
 gi|260209113|emb|CBA62287.1| putative exonuclease [Clostridium difficile CD196]
 gi|260212564|emb|CBE03543.1| putative exonuclease [Clostridium difficile R20291]
          Length = 191

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 34/190 (17%)

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
             I +    D P+F  +++ F  F + Q+         + VG +    + IN   L    
Sbjct: 2   TNIKNSDFNDSPTFPEVYNNFIKFISSQDPILCV----WGVGDLKELYRNINYHKLPSSS 57

Query: 120 -PSRIIDTLSIARRKH--PSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P   I+    A +    P+ ++  L +      +     S H AL D++  + V+IK+ 
Sbjct: 58  LPKSYINIQQHASKYFNNPAGKSIGLQNAISILELD-EKMSYHNALNDAYYTAKVFIKI- 115

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
                                   VP+I L    KP   R + ++  ++DK      K  
Sbjct: 116 -------------------YNPSIVPDIYLYTSIKPKTIRYSNKKRVDYDKLFDEFRK-- 154

Query: 236 IWDRYISSNQ 245
           I +R ++ ++
Sbjct: 155 ILNRELTKDE 164


>gi|224057242|ref|XP_002299190.1| predicted protein [Populus trichocarpa]
 gi|222846448|gb|EEE83995.1| predicted protein [Populus trichocarpa]
          Length = 409

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 54/182 (29%), Gaps = 15/182 (8%)

Query: 9   KIVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLH 63
            +V D E T     +     IIE    +      +    FQ ++ P   +  S     L 
Sbjct: 136 FVVIDFEATCDKERNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLT 195

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRIN--KD 116
           GI    +    + S        +   +         +   + +D   +     R    + 
Sbjct: 196 GIQQIQVDRGVTLSEALLRHDKWLENKGIKNTKFAVVTW-SNWDCRVMLESECRFKKIRK 254

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P   +R I+           +R  L    +  G+    R  H  L D+   + +   +M 
Sbjct: 255 PPYFNRWINLKVPFCDIFGGARC-LKEAVEMAGLHWQGR-AHCGLDDAKNTARLLALLMR 312

Query: 177 GG 178
            G
Sbjct: 313 RG 314


>gi|325128584|gb|EGC51455.1| DNA polymerase III subunit epsilon [Neisseria meningitidis N1568]
          Length = 55

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 8  RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
          R+I+ D ETTGL +   DR++E   +E+++   T++   +++ P  R    EA
Sbjct: 4  RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEA 55


>gi|10566927|dbj|BAB16040.1| similar to Staphylococcus aureus DNA polymerase III [Streptococcus
           equi subsp. zooepidemicus]
          Length = 135

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGAL 161
           VGF+NA   R     +    +IDTL +AR  +P   R+ L  L KR+ +++ H   H A 
Sbjct: 1   VGFMNANYDRYGLAKIS-QPVIDTLELARNLYPEYKRHGLGPLTKRFQVSLEHH--HMAN 57

Query: 162 LDSHLLSDVY 171
            D+     + 
Sbjct: 58  YDAEATGRLL 67


>gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
 gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
          Length = 920

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 34/146 (23%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N  + +  D ETTGLD+  D II I  A++  +          +L  +GR          
Sbjct: 347 NSKKLVCIDFETTGLDTFKDTIIGISFAIKSNEA--------FYLDLSGR---------T 389

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I  +            +  +D   +++ + I HN K++   + A  + I       +  
Sbjct: 390 KIDKD---------KCMNLVFDTLEKEDIKVIGHNLKYEYKMMRAIGKSIG------NMY 434

Query: 124 IDTLSIARRKHP-SSRNDLNSLCKRY 148
            DT+  A   +P   R +++ L   Y
Sbjct: 435 FDTMVAAYLINPTRGRYNMDDLAIAY 460


>gi|291059523|gb|ADD72258.1| DNA polymerase I (POL I) [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 1015

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 65/200 (32%), Gaps = 43/200 (21%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN----------------GR 53
           + FD ET GL   + R++         + +    +   + P+                  
Sbjct: 411 VAFDCETDGLHPHDTRLVGFSIC----FQEAEAFYVPLIVPDVSLHTESTQCTCARSTNV 466

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           +   E  + HG++   ++D     ++  +    +N++    + HN KFD   ++    R 
Sbjct: 467 ETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMH----RA 522

Query: 114 NKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRY--------------GITISHRSKH 158
                    I DT+  A    P      ++ L   +              G T +H    
Sbjct: 523 GVFEHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQTFAHVPYE 582

Query: 159 GAL----LDSHLLSDVYIKM 174
            A+     D+ +   +Y  +
Sbjct: 583 CAVRYAAEDADITFRLYHYL 602


>gi|282865023|ref|ZP_06274076.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE]
 gi|282559946|gb|EFB65495.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE]
          Length = 201

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 63/171 (36%), Gaps = 28/171 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH 63
           R +  D E TGL   +D +IE+ A V   + +       + + P        PE + ++H
Sbjct: 4   RMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGDGVDIVIRPPDAALETMPEVVRQMH 63

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINK 115
              G+ DE L    + +        +  E       A    +    D GF+  ++Q +  
Sbjct: 64  TASGLLDE-LAGGTTLADAEERVLAYVREHVKEPGKAPLCGNTVGTDRGFLARDMQSLEG 122

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 RI+D  S+   ARR +P          + Y  +      H AL D
Sbjct: 123 --FLHYRIVDVSSVKELARRWYP----------RAYFNSPEKNGNHRALAD 161


>gi|291416206|ref|XP_002724338.1| PREDICTED: interferon stimulated exonuclease [Oryctolagus
           cuniculus]
          Length = 181

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 13/165 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E  GL    +  +   ++  L  +     +  F+ P G        ++ G+T + 
Sbjct: 8   VAMDCEMVGLGPLRESGLARCSLVSLQGTVL---YDKFILPEGEITDYR-TRVSGVTPQH 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +     F+    E       +    + H+ K D   +  +++          R    L  
Sbjct: 64  MATATPFAQARREILQLL--RGKLVVGHDLKHDFQALREDMEAYTIYDTATDR---LLWR 118

Query: 130 ARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVY 171
             R     R  L  LC+R     I  +    H ++ D+    +++
Sbjct: 119 EARLGSCRRVSLRVLCERLLHRHIQNTGLG-HSSVEDARATMELF 162


>gi|295677244|ref|YP_003605768.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
           CCGE1002]
 gi|295437087|gb|ADG16257.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
           CCGE1002]
          Length = 203

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 41/181 (22%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAV-------ELLDYSK--TNRTFQVFLCPNGRK 54
           ++ M  +  D+E TGL+   DRIIEI  V        +++      +++ +        K
Sbjct: 15  RSDMNLVWLDMEMTGLEPDTDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETL-----AK 69

Query: 55  NSPEALKLHG----ITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFI 106
                   HG    I    +    S +   ++  +F  +      +    ++   D  F+
Sbjct: 70  MDEWNQNTHGRSGLIDRVKVST-VSEADATAQIREFLGQYVPPGKSPMCGNSICQDRRFM 128

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALL 162
              +  +  +     R +D             + L  LC+R+   I      R+ H AL 
Sbjct: 129 ARWMPDL--ESFFHYRNLDV------------STLKELCRRWQPVIYKGFQKRAMHTALA 174

Query: 163 D 163
           D
Sbjct: 175 D 175


>gi|194041195|ref|XP_001926820.1| PREDICTED: three prime repair exonuclease 1-like [Sus scrofa]
          Length = 314

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 68/196 (34%), Gaps = 38/196 (19%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAV------------------ELLDYSKTNRTFQVFL 48
              I  D+E TGL     ++ E+  +                   +    +      + +
Sbjct: 12  QTLIFLDLEATGLPFSQPKVTELCLLAVHRCALESLPIPQGPSPTVPPPPRVLDKLSLCV 71

Query: 49  CPNGRKNSPEALKLHGITDEFLK--DKPSFSS-IFSEFWDFFNE--QNAEWIAHN-AKFD 102
            P G+  SP A ++ G++   L    +  F + + +    F     Q +  +AHN  ++D
Sbjct: 72  AP-GKACSPAASEITGLSTAVLAAHGRQYFDANLANLLRAFLQRQPQPSCLVAHNGDRYD 130

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGIT 151
              + AEL  +     LD +  +D+++  +            P     L S+  R YG  
Sbjct: 131 FPLLQAELAMLGLASALDDTFCVDSIAALKALEQADGSSEHGPRKSYSLGSIYTRLYGQA 190

Query: 152 ISHRSKHGALLDSHLL 167
                 H A  D   L
Sbjct: 191 PPD--SHTAEGDVLAL 204


>gi|255729492|ref|XP_002549671.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240132740|gb|EER32297.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 656

 Score = 56.0 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 21/159 (13%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           F   + P   + +    K  GIT+E LKD   +   I   F    + ++   + H+ + D
Sbjct: 323 FDELVKPE-EEITDYVTKYSGITEEMLKDVTTTIHDIQDLFLKHVSSED-ILVGHSLESD 380

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARR-KHPSSRNDLNSLCKRY---GITI--SHRS 156
           +  +           +  S+++DT  I    + P S+  L  L ++Y    I     H  
Sbjct: 381 LNVMK----------IMHSKVVDTSIIYEHNRGPPSKPSLRWLAQQYLKSDIQTGEDHGH 430

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKE 195
            H ++ D+    D+ +K+ +   ++ FG    E   F  
Sbjct: 431 GHSSIEDAKACLDL-VKLKIQNGRL-FGTNVGEISIFSR 467


>gi|227875987|ref|ZP_03994110.1| exoribonuclease II [Mobiluncus mulieris ATCC 35243]
 gi|227843519|gb|EEJ53705.1| exoribonuclease II [Mobiluncus mulieris ATCC 35243]
          Length = 205

 Score = 56.0 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 61/178 (34%), Gaps = 28/178 (15%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNS--- 56
           M +      +  D E TGLD   D +IEIG  V   + +  +    + + P+        
Sbjct: 1   MTKALTDALVWVDCEMTGLDLATDELIEIGVIVTDFNLNPLDTGIDLLIKPSQTALDNMG 60

Query: 57  PEALKLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINA 108
               ++H   G+ DE L      +    +  ++          A    ++   D  F+  
Sbjct: 61  DFVREMHTKSGLLDE-LDHGLPVTEAARQVLEYVQRFVPEAGKAPLAGNSVGTDKTFLKK 119

Query: 109 ELQRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++   +       RI+D  SI   A R  P          K YGI       H AL D
Sbjct: 120 QMP--DFVDWLHYRIVDVSSIKELAARWFP----------KVYGIAPEKFGNHRALGD 165


>gi|29831803|ref|NP_826437.1| oligoribonuclease [Streptomyces avermitilis MA-4680]
 gi|37999370|sp|Q82CS8|ORN_STRAW RecName: Full=Oligoribonuclease
 gi|29608920|dbj|BAC72972.1| putative 3'->5' exoribonuclease [Streptomyces avermitilis MA-4680]
          Length = 200

 Score = 56.0 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 65/170 (38%), Gaps = 26/170 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEALK-LH 63
           R +  D E TGL   +D +IE+ A V   + +       + + P        PE ++ +H
Sbjct: 4   RMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVRTMH 63

Query: 64  ---GITDEFLKD---KPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKD 116
              G+ DE         + + + +   +   E   A    ++   D GF+  ++  +  +
Sbjct: 64  TASGLLDELAAGTTLADAEAQVLAYVREHVKEPGKAPLCGNSVGTDRGFLARDMSAL--E 121

Query: 117 PLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                RI+D  S+   ARR +P          + Y  +      H AL D
Sbjct: 122 TYLHYRIVDVSSVKELARRWYP----------RAYFNSPEKSGNHRALAD 161


>gi|213692888|ref|YP_002323474.1| hypothetical protein Blon_2029 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524349|gb|ACJ53096.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320459063|dbj|BAJ69684.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 492

 Score = 56.0 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 71/198 (35%), Gaps = 48/198 (24%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVF---------------------LC 49
            DIETTG+D   D II++G     +   +     + +                     + 
Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323

Query: 50  PNGRKN-SPEALKLHGITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNA 99
           P      +    KL GI    ++ +           +    +       +Q   ++AHNA
Sbjct: 324 PENAALGNALIAKLTGI---DVRGRSSEAGYRLFDEWPQAQAGLLARLIQQ--PYVAHNA 378

Query: 100 KFDVGFIN------AELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
            F+  +        AE  R  +    D L  SR  D  ++   +HP   N L++  KR  
Sbjct: 379 TFEHSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQD 438

Query: 150 -ITISHRSKHGALLDSHL 166
            +  +H  +H  L DSH+
Sbjct: 439 ALDSAHNERHLGLEDSHI 456


>gi|227503970|ref|ZP_03934019.1| oligoribonuclease [Corynebacterium striatum ATCC 6940]
 gi|227199438|gb|EEI79486.1| oligoribonuclease [Corynebacterium striatum ATCC 6940]
          Length = 210

 Score = 56.0 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 23/169 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC---PNGRKNSPEALKLH 63
           R +  D+E TGLD K   I+E+ A+    + +       + +        +       +H
Sbjct: 10  RLVWIDLEMTGLDPKRHVIVEVAAIITDGNLNVIGEGIDLVVHATEAELAEMDDFVTNMH 69

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINK 115
              G+  E  +   +             E       A    ++   D  FI A + R+++
Sbjct: 70  ANSGLDKEIRESTTTLREAEDAVLALIAEHCNPEHPAPLAGNSIATDRTFIRAYMPRLDE 129

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  ++RR  P +  +                 H AL D
Sbjct: 130 ALHYRMIDVSTIKELSRRWFPRAYYN----------QPDKGMAHRALQD 168


>gi|167957555|ref|ZP_02544629.1| oligoribonuclease [candidate division TM7 single-cell isolate TM7c]
          Length = 182

 Score = 56.0 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 64/177 (36%), Gaps = 31/177 (17%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +K + +  D+E TGLD   D+I+E+ A+    D+++  R F+  +  +    S      
Sbjct: 1   MSKAKILWVDLEMTGLDPTKDKILEVAAIATDWDFNEVGR-FESAVKVDDSLISARFKAG 59

Query: 63  HGI--TDEFLKD---------KPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFI 106
           H     +   +D         K +   +  +   F       ++      ++   D  FI
Sbjct: 60  HNFWDANPDARDGLILQNSQAKLTSKQVEEDILKFTKEYFTHDEPILLAGNSIHQDRKFI 119

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + E   +    L   R++D +S  +               +YG   +    H AL D
Sbjct: 120 DREWPNLG--SLLHYRMLD-VSAWKVVFDG----------KYGKRFAKPEAHRALDD 163


>gi|262165616|ref|ZP_06033353.1| hypothetical protein VMA_002063 [Vibrio mimicus VM223]
 gi|262171593|ref|ZP_06039271.1| hypothetical protein VII_002415 [Vibrio mimicus MB-451]
 gi|261892669|gb|EEY38655.1| hypothetical protein VII_002415 [Vibrio mimicus MB-451]
 gi|262025332|gb|EEY44000.1| hypothetical protein VMA_002063 [Vibrio mimicus VM223]
          Length = 156

 Score = 56.0 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 10/162 (6%)

Query: 16  TTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL-KDK 73
           TTG       IIE+G  E+ L   K  +  Q F+ P   + S    +L GIT   + K  
Sbjct: 3   TTG------EIIEVGLAEIDLSAGKIVKRAQYFVKPEKDEISLFCAELTGITPRKIEKQG 56

Query: 74  PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK 133
                +       F   N  + +   + D+  IN   ++    P      + TL   + +
Sbjct: 57  RPLVEVLQSMVKNFGGSNKIYASW-GRDDLILINECREKGIPVPFQEFLNLATLYRIQHR 115

Query: 134 HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
               R    +  +  GI    R  H   +D++ L+ + + M+
Sbjct: 116 LKDKRIGHRAAQESQGIEWEGRQ-HSGYVDAYNLAKLALTML 156


>gi|82000377|sp|Q5UR48|YR569_MIMIV RecName: Full=Uncharacterized exonuclease R569
 gi|55417182|gb|AAV50832.1| unknown [Acanthamoeba polyphaga mimivirus]
          Length = 321

 Score = 56.0 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 64/200 (32%), Gaps = 46/200 (23%)

Query: 10  IVFDIETTGL----DSKND----------------------RIIEIGAVELLDYSKTNRT 43
           +V+D+ETTG                                 IIEI   +          
Sbjct: 131 LVYDLETTGAIENQGPFEHKPVIQRSQIYFRNNKYYAIIYPEIIEIAIKDYETGLII--- 187

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHN-AKF 101
               +  N    +     + GIT   L  + +   I  E  D          +AHN   F
Sbjct: 188 MNKLVKANST-LTLGIQNITGITPNMLVGQSTLDQIKVELEDKLKLFTACNMLAHNGNSF 246

Query: 102 DVGFINAELQRINKDPLDPSR--IIDTLSIARRKHPSSRNDLN--SL-CKRYGITISHRS 156
           D   +      +    L+P +   IDTLS+    H  S + L+  +L    Y +      
Sbjct: 247 DNKIM------LFYKLLNPQQVFFIDTLSVI-PVHMESNSKLDKKNLSAIYYQLFKEKFQ 299

Query: 157 KHGALLDSHLLSDV--YIKM 174
            H A+ D   L  +  Y+K+
Sbjct: 300 AHRAMNDVDALIKIMKYLKI 319


>gi|262403997|ref|ZP_06080552.1| hypothetical protein VOA_001985 [Vibrio sp. RC586]
 gi|262349029|gb|EEY98167.1| hypothetical protein VOA_001985 [Vibrio sp. RC586]
          Length = 156

 Score = 56.0 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 12/163 (7%)

Query: 16  TTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL-KDK 73
           TTG       IIE+G  E+ L      +  Q F+ P   + S    +L GIT   + K  
Sbjct: 3   TTG------EIIEVGLAEIDLSAGTIVKRAQYFVKPEKDEISLFCAELTGITPRKIEKQG 56

Query: 74  PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSIARR 132
              + +       F   N  + +     D   +  E +      P      + TL   + 
Sbjct: 57  RPLAEVLQSMVKNFGGSNKIYAS--WGRDDRILINECREKGIPVPFQEFLNLATLYRIQH 114

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +    R    +  +  GI    R  H   +D++ L+ + + M+
Sbjct: 115 RLKDKRIGHRAAQESQGIEWEGRQ-HSGYVDAYNLAKLALTML 156


>gi|328887603|emb|CAJ68200.2| putative ribonuclease [Clostridium difficile]
          Length = 191

 Score = 55.6 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 34/190 (17%)

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
             I +    D P+F  +++ F  F + Q+         +  G +    + IN   L    
Sbjct: 2   TNIKNSDFNDSPTFPEVYNNFIKFISSQDPILCV----WGAGDLKELYRNINYHKLPSNS 57

Query: 120 -PSRIIDTLSIARRKH--PSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P   I+    A +    P+ ++  L +      +     S H AL D++  + V+IK+ 
Sbjct: 58  LPKSYINIQQHASKYFNNPAGKSIGLQNAISILELD-EKMSYHNALNDAYYTAKVFIKI- 115

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
                                   VP+I L    KP   R + ++  ++DK      K  
Sbjct: 116 -------------------YNPSIVPDIYLYTSIKPKTIRYSNKKRVDYDKLFDEFRK-- 154

Query: 236 IWDRYISSNQ 245
           I +R ++ ++
Sbjct: 155 ILNRELTKDE 164


>gi|256424775|ref|YP_003125428.1| exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis
           DSM 2588]
 gi|256039683|gb|ACU63227.1| Exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis
           DSM 2588]
          Length = 172

 Score = 55.6 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  I+ D+E+ G    +  +I  GAV++      ++TF   L P   K  PEAL + G T
Sbjct: 1   MAYIMVDVESDGPIPGDYSMISFGAVKV--DGILDKTFYGRLKPVSEKFIPEALAVSGHT 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQR-INKDPL-DPS 121
                       + ++F ++ ++       +I+ N  FD  F+       + ++P    S
Sbjct: 59  RAETLTFDDPKKVMNDFQNWISKVCNDRPIFISDNNGFDWMFVCWYFHHFLGENPFGFSS 118

Query: 122 RIIDTLS--IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + + ++   + +    + ++          +  +  + H  + D+   ++  + M
Sbjct: 119 QNLGSVYKGMEKDMFTNFKH----------LRKTKHTHHP-VDDAKGNAEALLTM 162


>gi|307730586|ref|YP_003907810.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
           CCGE1003]
 gi|307585121|gb|ADN58519.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
           CCGE1003]
          Length = 203

 Score = 55.6 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 61/180 (33%), Gaps = 39/180 (21%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAV-------ELLDYSK--TNRTFQVFLCPNGRK 54
           ++ M  +  D+E TGL+  +DRIIEI  V        +++      +++ +        +
Sbjct: 15  RSDMNLVWLDMEMTGLNPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETL-----AR 69

Query: 55  NSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFIN 107
                   H   G+ D       S +       DF         +    ++   D  F+ 
Sbjct: 70  MDQWNQNTHGRSGLIDRVKASTVSEADATVLIRDFLGAYVPPGKSPMCGNSICQDRRFMA 129

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
             +  +  +     R +D             + L  LC+R+   I      R+ H AL D
Sbjct: 130 RWMPEL--ETFFHYRNLDV------------STLKELCRRWQPAIYKGFQKRAMHTALAD 175


>gi|320010661|gb|ADW05511.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           flavogriseus ATCC 33331]
          Length = 202

 Score = 55.6 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 63/171 (36%), Gaps = 28/171 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH 63
           R +  D E TGL   +D +IE+ A V   + +       + + P        PE + ++H
Sbjct: 4   RMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVRQMH 63

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINK 115
              G+ DE L    + +        +  E       A    ++   D GF+  ++  +  
Sbjct: 64  TASGLLDE-LAGGTTLADAEERVLAYIREHVKEPGKAPLCGNSVGTDRGFLARDMPSLEG 122

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 RI+D  S+   ARR +P          + Y  +      H AL D
Sbjct: 123 --FLHYRIVDVSSVKELARRWYP----------RAYFNSPEKNGNHRALAD 161


>gi|321254581|ref|XP_003193124.1| mipD [Cryptococcus gattii WM276]
 gi|317459593|gb|ADV21337.1| MipD, putative [Cryptococcus gattii WM276]
          Length = 417

 Score = 55.6 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 57/163 (34%), Gaps = 11/163 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D E  G+   N     +  V +++Y         F+ P     +     + G+   
Sbjct: 141 YLAIDCEMVGVGP-NGMENTLARVSIVNYHGAV-ILDTFVQP-REPVTDYRTWISGVKQS 197

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   P F  +  +  D  +++    + H    D+  +   L        D  +      
Sbjct: 198 DLLGAPQFEEVHKQVADLLHDK--ILVGHAIDNDLKVL--MLTHPGPLTRDTQKHKPLQE 253

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           IA+ K P  +  L+ L    G+ I     H +++D+ +   +Y
Sbjct: 254 IAKNKRPGLK-KLSELL--LGVQI-QIGAHSSIVDARVTMALY 292


>gi|224072947|ref|XP_002303940.1| predicted protein [Populus trichocarpa]
 gi|222841372|gb|EEE78919.1| predicted protein [Populus trichocarpa]
          Length = 399

 Score = 55.6 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 54/182 (29%), Gaps = 15/182 (8%)

Query: 9   KIVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLH 63
            +V D E T     +     IIE    +      +    FQ ++ P   +  S     L 
Sbjct: 126 FVVIDFEATCDKERNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQHLSDFCKDLT 185

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRIN--KD 116
           GI    +    + S        +   +         +   + +D   +     R    + 
Sbjct: 186 GIQQIQVDRGVTLSEALLRHDKWLENKGIKNTSFAVVTW-SNWDCRVMLESECRFKKIRK 244

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P   +R I+           +R  L    +  G+    R  H  L D+   + +   +M 
Sbjct: 245 PPYFNRWINLKVPFCEIFGGARC-LKEAVEMAGLEWQGR-AHCGLDDAKNTARLLALLMH 302

Query: 177 GG 178
            G
Sbjct: 303 RG 304


>gi|148225871|ref|NP_001088822.1| REX2, RNA exonuclease 2 homolog [Xenopus laevis]
 gi|126631799|gb|AAI33811.1| LOC496097 protein [Xenopus laevis]
          Length = 186

 Score = 55.6 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 58/175 (33%), Gaps = 22/175 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M +    R +  D+E TGLD + D IIE+   +   +         + +          +
Sbjct: 1   MAKDMGQRMVWVDLEMTGLDIEKDEIIEMACLITDSNLDILAEGPNLIIKQPDELLDGMS 60

Query: 60  --LKLH----GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAE 109
              K H    G+T    + + +      EF  F  +           ++   D  F++  
Sbjct: 61  DWCKEHHGKSGLTQAVRESRITLQQAEYEFLSFIRQHTPPGVCPLAGNSVHADKKFLDKY 120

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + R  +        + T+  + RR HP            Y +     + H AL D
Sbjct: 121 MPRFMRHLHYRIIDVSTVKELCRRWHPVE----------YRLAPKKAASHRALDD 165


>gi|301783179|ref|XP_002926994.1| PREDICTED: interferon-stimulated 20 kDa exonuclease-like 2-like
           [Ailuropoda melanoleuca]
 gi|281342908|gb|EFB18492.1| hypothetical protein PANDA_016705 [Ailuropoda melanoleuca]
          Length = 348

 Score = 55.6 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 65/196 (33%), Gaps = 23/196 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M RK     +  D E  G   K   +  +    +++Y   +  +  ++ P          
Sbjct: 170 MPRK----MVAIDCEMVGTGPKGH-VSSLARCSIVNYHG-DVLYDEYILPPCHIVDYR-T 222

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +  GI  + + +   F +  S+       +    + H    D   +          P   
Sbjct: 223 RWSGIRKQHMVNATPFKTARSQILKILAGK--IVVGHAIHNDFKALQYFH------PKSL 274

Query: 121 SRIIDTLSIARRKHPSSRN---DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKM 174
           +R    +    RK     N    L +L K+     I +  RS H ++ D+    ++Y K+
Sbjct: 275 TRDTSHIPPLNRKADCPENATMSLKTLTKKLLNRDIQV-GRSGHSSVEDAQATMELY-KL 332

Query: 175 MVGGSQINFGFKTNED 190
           +    + +      ED
Sbjct: 333 VEAEWEQHLAQSPPED 348


>gi|329120336|ref|ZP_08249004.1| oligoribonuclease [Neisseria bacilliformis ATCC BAA-1200]
 gi|327462677|gb|EGF09000.1| oligoribonuclease [Neisseria bacilliformis ATCC BAA-1200]
          Length = 184

 Score = 55.6 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 23/175 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----S 56
           M ++N       D+E TGL  + DRIIE+  +             V+      +      
Sbjct: 1   MAQQNANNLCWLDMEMTGLSPETDRIIEVAVIITDSDLNVLAQSPVYAVHQSDEVLDAMD 60

Query: 57  PEALKLHGIT--DEFLKDKP-SFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAE 109
                 HG T   + +++   + + +     DF       Q +    ++   D  F+   
Sbjct: 61  EWCTATHGRTGLTQRVRESQYTEAEVEQNLLDFIAAWIPAQASPMCGNSVHQDRRFMQKY 120

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + R+       +  + TL  +A+R +P       ++ K     +  R  H AL D
Sbjct: 121 MPRLEAYFHYRNLDVSTLKELAKRWNP-------AVAK----GVVKRGSHKALDD 164


>gi|307565109|ref|ZP_07627619.1| conserved domain protein [Prevotella amnii CRIS 21A-A]
 gi|307346195|gb|EFN91522.1| conserved domain protein [Prevotella amnii CRIS 21A-A]
          Length = 88

 Score = 55.6 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           +  I   LQ ++  P        +L  AR  +    N L+ LC  + I  S+ + H A  
Sbjct: 1   MSCIRHTLQ-LHHLPCPDIDYYYSLRAARHIYDFGYNSLDYLCDHFSI--SYGTHHRAGD 57

Query: 163 DSHLLSDVYIKMMVGG 178
           D+ + + ++++ +  G
Sbjct: 58  DAEMCAQLFLQEIKDG 73


>gi|145509679|ref|XP_001440778.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408006|emb|CAK73381.1| unnamed protein product [Paramecium tetraurelia]
          Length = 431

 Score = 55.6 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 18/171 (10%)

Query: 9   KIVFDIETTGLDSKN----DRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKN-SPEALKL 62
            I+ D E T +   +      IIE  A V  +   K  + FQ ++ P      S    +L
Sbjct: 237 IIILDFEATCVRESDKKYLQEIIEFPAQVYNVQERKVKKEFQKYIKPVENPILSDFCTEL 296

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT + + +        +EF +F        I     +D+  +  E  R     +  SR
Sbjct: 297 TGITQQQVDEGILLDQAINEFIEFKQGLQKCCILTCGDYDLHLLKKEAARKG---IPISR 353

Query: 123 IIDTLSIARRKHP-SSRNDLN-------SLCKRYGITISHRSKHGALLDSH 165
            +      ++  P S RN  +        + K  G+ +  R  H  + D  
Sbjct: 354 ELQYYINIKKVFPKSLRNPKDPKDPCMVEMLKLCGLDLLGR-HHSGIDDVK 403


>gi|281202353|gb|EFA76558.1| putative RNase III [Polysphondylium pallidum PN500]
          Length = 164

 Score = 55.6 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 9  KIVFDIETT---GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
           +V D E T   G       IIE    +  ++  K   TF+ ++ P +  + S    +L 
Sbjct: 8  IVVLDFEATCENGTKIAKQEIIEFPSVIVEVETCKIVDTFREYVKPVHNPRLSAFCTELT 67

Query: 64 GITDEFLKDKPSFSSIFSEFWDFF 87
          GI   ++ +  +FS +      + 
Sbjct: 68 GIQQAWVDEAQTFSVVMENHRQWL 91


>gi|115438614|ref|NP_001043587.1| Os01g0618000 [Oryza sativa Japonica Group]
 gi|54290428|dbj|BAD61298.1| unknown protein [Oryza sativa Japonica Group]
 gi|113533118|dbj|BAF05501.1| Os01g0618000 [Oryza sativa Japonica Group]
 gi|215693971|dbj|BAG89138.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 304

 Score = 55.6 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 54/190 (28%), Gaps = 16/190 (8%)

Query: 9   KIVFDIETT---GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D E T   G       IIE  AV +     +    F+ ++ P      +    +L 
Sbjct: 30  FVVVDFEATCERGRRIYPQEIIEFPAVLVDAATGRLVSAFRAYVRPRHHPRLTDFCRELT 89

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAE-------WIAHNAKFDVGFINAELQRINK- 115
           GI    +      +       ++               +          +  E +     
Sbjct: 90  GIAQGDVDAGVGLAEALLRHDEWLRAAGVVEGGGRFAVVTWGDADCRTMLEQECRFKGIA 149

Query: 116 DPLDPSRIIDTLSIARRKHPSS--RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            P    R +D              R  L    +  G+    R  H  L D+   + + ++
Sbjct: 150 KPAYFDRWVDLRVHFEAAFGGGGQRVKLQEAVRAAGLEWVGR-LHCGLDDACNTARLLVE 208

Query: 174 MMVGGSQINF 183
           ++  G  I+ 
Sbjct: 209 LLRRGVPISI 218


>gi|319443116|ref|ZP_07992272.1| oligoribonuclease [Corynebacterium variabile DSM 44702]
          Length = 209

 Score = 55.6 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 56/171 (32%), Gaps = 27/171 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC---PNGRKNSPEALKLH 63
           R +  D E TGLD+    ++EI  V    +    +    + +        +       +H
Sbjct: 11  RLVWVDCEMTGLDTSRHVLVEIAVVVTDAELKPLDEGIDIVIHATEDELAEMDDFVTNMH 70

Query: 64  ---GITDEF----LKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINK 115
              G+TDE     +    +   +      F      A    ++   D  FI   +  +  
Sbjct: 71  GSSGLTDEIRASSVSVADAEKRVVEYIRRFVASSGVAPLCGNSIASDRKFIAKYMPDL-- 128

Query: 116 DPLDPSRIIDTLSIA---RRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           D     R+ID  SI    RR +P          + Y        +H AL D
Sbjct: 129 DNFLHYRMIDVSSIKELTRRWYP----------RVYSGQPEKGMQHRALAD 169


>gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
 gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
          Length = 946

 Score = 55.6 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 34/147 (23%)

Query: 4   KNKMRK--IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +N M++  + FD ETTGL+     ++ I              F             EA K
Sbjct: 367 QNLMKQTSVCFDTETTGLNPLTAELVGIA-------------FSW-----------EASK 402

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
             G    F +D+     +  +   FF ++  E I  N K+D+  +         + +   
Sbjct: 403 --GFYIPFPEDQDQAQELIEQLRPFFEDEKIEKIGQNLKYDIKVLR------KYNLIIKG 454

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY 148
              DT+      +P  R++++ L + Y
Sbjct: 455 AYFDTMLAHYLINPDMRHNMDVLAETY 481


>gi|115485705|ref|NP_001067996.1| Os11g0525900 [Oryza sativa Japonica Group]
 gi|77551213|gb|ABA94010.1| exonuclease family protein, expressed [Oryza sativa Japonica Group]
 gi|113645218|dbj|BAF28359.1| Os11g0525900 [Oryza sativa Japonica Group]
          Length = 319

 Score = 55.6 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 51/184 (27%), Gaps = 29/184 (15%)

Query: 9   KIVFDIETT---GLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCP-NGRKNSPEALKL 62
            +V D+E T   G       IIE  +V +      +    F+ ++ P + R+ +    +L
Sbjct: 23  FVVIDLEATCERGRRIYPQEIIEFASVVVDGATGEQLAEAFRAYVRPLHHRELTDYCREL 82

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNA-------------EWIAHNAKFDVGFINAE 109
            GI    +               + + +                 +     +D   +   
Sbjct: 83  TGIAQADVDAGVDLREALRAHDAWLDARGVKNAAGGGGGGGGFAVVTW-GDWDCRTMLEG 141

Query: 110 LQRIN-----KDPLDPSRIIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGAL 161
             R         P    R I+     R+        R  L       G+    R  H  L
Sbjct: 142 ECRFKGIIGDGKPEYFDRWINLKVPFRQVFDRGGARRIGLEEALAVAGLAFEGR-PHSGL 200

Query: 162 LDSH 165
            D+ 
Sbjct: 201 DDAR 204


>gi|151945554|gb|EDN63795.1| RNA exonuclease [Saccharomyces cerevisiae YJM789]
          Length = 289

 Score = 55.6 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 18/170 (10%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + I  D E  G+  +     +  I  V    +   +     F+ P  +        + GI
Sbjct: 120 KYIAMDCEFVGVGPEGKESALARISIVNYFGHVVLDE----FVKPREKVVEWR-TWVSGI 174

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E +K+  +F     +  D    +    + H  K D+  +          P    R   
Sbjct: 175 KPEHMKNAITFKEAQKKTADIL--EGRILVGHALKHDLEALMLSH------PKSLLRDTS 226

Query: 126 TLSIARRKHPSSRN-DLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIK 173
                R+ +   +   L  L +    I+I    +H ++ D+     +Y K
Sbjct: 227 RHLPFRKLYAKGKTPSLKKLTREVLKISI-QEGEHSSVEDARATMLLYKK 275


>gi|6324493|ref|NP_014561.1| Rex4p [Saccharomyces cerevisiae S288c]
 gi|74676463|sp|Q08237|REXO4_YEAST RecName: Full=RNA exonuclease 4
 gi|1419913|emb|CAA99090.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285814811|tpg|DAA10704.1| TPA: Rex4p [Saccharomyces cerevisiae S288c]
          Length = 289

 Score = 55.6 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 18/170 (10%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + I  D E  G+  +     +  I  V    +   +     F+ P  +        + GI
Sbjct: 120 KYIAMDCEFVGVGPEGKESALARISIVNYFGHVVLDE----FVKPREKVVEWR-TWVSGI 174

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E +K+  +F     +  D    +    + H  K D+  +          P    R   
Sbjct: 175 KPEHMKNAITFKEAQKKTADIL--EGRILVGHALKHDLEALMLSH------PKSLLRDTS 226

Query: 126 TLSIARRKHPSSRN-DLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIK 173
                R+ +   +   L  L +    I+I    +H ++ D+     +Y K
Sbjct: 227 RHLPFRKLYAKGKTPSLKKLTREVLKISI-QEGEHSSVEDARATMLLYKK 275


>gi|73536578|ref|XP_847713.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|321438626|emb|CBZ12385.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 880

 Score = 55.6 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 20/185 (10%)

Query: 10  IVFDIETTGLDSKND-------RIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEAL 60
           +V D E T    +          IIE   V +     +    F  F+ P   R+ S    
Sbjct: 633 LVLDFEAT---CEEHPPPNYLYEIIEFPVVVVDARLQRVVAEFHRFVRPRYKRELSSFCK 689

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAE-LQRIN 114
           KL G+  E +    S   +  +F  + +          ++         F+    + R  
Sbjct: 690 KLTGMRQEDVDTAASLEEVIRQFERWLSHTLPPHARCMFVTDGPMDLREFMYYHSVSRQG 749

Query: 115 KD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              P    + ID           S+  + ++ +   +    R  H  L D+  ++ + I 
Sbjct: 750 IRFPSLFYQFIDVKQTFACFFRCSQGKIKAMLEVMHLPFEGR-LHSGLDDARNIASIVIG 808

Query: 174 MMVGG 178
           ++  G
Sbjct: 809 LLHHG 813


>gi|148272620|ref|YP_001222181.1| oligoribonuclease [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830550|emb|CAN01485.1| oligoribonuclease [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 206

 Score = 55.6 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 22/174 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNG---RKNSP 57
           +  N  R +  D E TGLD   D ++E+  V    D    +  F + + P+         
Sbjct: 1   MGNNADRLVWIDCEMTGLDLAIDELVEVAVVVTDFDLVPVDDGFTIVINPDPAALANMGE 60

Query: 58  EALKLH---GITDE---FLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAEL 110
              ++H   G+ DE    +    +  ++             A    +    D  F+   +
Sbjct: 61  FVTEMHRSSGLLDEIPAGVSLADAEFAVLEYLLQHVPTGGKAPIAGNTIGTDRAFLAKYM 120

Query: 111 QRINKDPLDPSRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R++      S  + ++ + A+   P          + Y  + +    H AL D
Sbjct: 121 PRVDAHLHYRSVDVSSIKVLAKEWFP----------RIYFNSPAKNGGHRALAD 164


>gi|17541752|ref|NP_499887.1| hypothetical protein R02D3.8 [Caenorhabditis elegans]
 gi|2736329|gb|AAB94148.1| Hypothetical protein R02D3.8 [Caenorhabditis elegans]
          Length = 266

 Score = 55.6 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 10/90 (11%)

Query: 10  IVFDIETTGLDSKND------RIIEIGAVE--LLDYSKTNRTFQVFLCP-NGRKNSPEAL 60
           +V D E T  D+          IIE   V+    D+S+  R F  ++ P    + +    
Sbjct: 62  LVLDFEATCQDNWKGPMHPVQEIIEFPVVQLSTADWSEI-RRFHQYVKPTECPRLTSFCT 120

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQ 90
            L GI  E + +KP+   + SEF  +  E 
Sbjct: 121 SLTGIIQEMVDEKPTLPQVLSEFDSWLKED 150


>gi|91784777|ref|YP_559983.1| oligoribonuclease [Burkholderia xenovorans LB400]
 gi|122970228|sp|Q13VF8|ORN_BURXL RecName: Full=Oligoribonuclease
 gi|91688731|gb|ABE31931.1| Oligoribonuclease [Burkholderia xenovorans LB400]
          Length = 207

 Score = 55.6 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 31/176 (17%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAV-------ELLDYSK--TNRTFQVFLCPNGRK 54
           ++ M  +  D+E TGL+  +DRIIEI  V        +++      +++ +         
Sbjct: 15  RSDMNLVWLDMEMTGLEPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETL-----AG 69

Query: 55  NSPEALKLHG---ITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFIN 107
                   HG   + D       S +    +  DF +       +    ++   D  F+ 
Sbjct: 70  MDQWNQNTHGRSGLIDRVKASTVSEADATEQIRDFLSVYVPPGKSPMCGNSICQDRRFMA 129

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  + +     +  + TL    R+   +                 R+ H AL D
Sbjct: 130 RWMPELERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 175


>gi|309379479|emb|CBX21845.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 187

 Score = 55.6 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 31/178 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGR---KNS 56
           M  KN +     D+E TGL+ + DRIIE+  +            +V+ +  +        
Sbjct: 1   MQDKNNLCW--LDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMD 58

Query: 57  PEALKLHGIT--DEFLKDK-PSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAE 109
                 HG T   + +++   + + +  +  DF +E    +      ++   D  F+   
Sbjct: 59  EWNTATHGRTGLTQRVRESLHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKY 118

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           + ++       +  + T              L  L KR+   ++     R  H AL D
Sbjct: 119 MPKLENYFHYRNLDVST--------------LKELAKRWNPPVAKSVVKRGSHKALDD 162


>gi|213692117|ref|YP_002322703.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213523578|gb|ACJ52325.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320458233|dbj|BAJ68854.1| hypothetical protein BLIJ_1267 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 185

 Score = 55.6 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 30/184 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D ETTGLD + D I+EIG +    D    +  F   +   G+  S     +HG  
Sbjct: 12  RLLWVDTETTGLDPRKDPILEIGMIATGPDLKPVDDGFHTTVHWEGKP-SEFIQSMHG-P 69

Query: 67  DEFLKD-----KPSFSSIFSEFWDFFNEQNAEWI-----AHNAKFDVGFINAELQRINKD 116
           +  L +      P+  +      D+      + +         +FD   +++ +  +   
Sbjct: 70  NGLLAECAHPSAPNMFAAALSARDYVVRHLGQGVRLLPAGSTVRFDRDMLDSWMPGVLDG 129

Query: 117 PLDPSRIIDTLSIARRKH-----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               S  I  +  A R       P                  HR  H  L D+   +  Y
Sbjct: 130 CSHRSLDISAVCEAVRMWNPAALPGMEPS-----------TDHRVMH-CLADTLRYAHAY 177

Query: 172 IKMM 175
             ++
Sbjct: 178 RGLI 181


>gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
 gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
          Length = 662

 Score = 55.6 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 46/139 (33%), Gaps = 39/139 (28%)

Query: 10  IVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  DIETTGLD     I  I+I A                  PN        ++  GIT+
Sbjct: 69  VGLDIETTGLDPHTSEISLIQIAA------------------PNRPVIL---IEFRGITN 107

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +                 F        + HN  F++ F+    + +  +P   +  IDT+
Sbjct: 108 K------------ETLRRFIEHPKIPKVGHNLAFEIQFLT---KHLGINPAKTA-WIDTM 151

Query: 128 SIARRKHPSSRNDLNSLCK 146
            +++         L    K
Sbjct: 152 LMSQLLAAGLPPTLEEDAK 170


>gi|71417701|ref|XP_810631.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70875192|gb|EAN88780.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 379

 Score = 55.2 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 63/224 (28%), Gaps = 51/224 (22%)

Query: 10  IVFDIETTGLDSK---NDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRK-NSPEALKLHG 64
           +V D E T   +       IIE   V +     +    F  ++ P      +     L G
Sbjct: 96  LVCDFEATCDSASVAYPHEIIEFPVVCVDTAELRVVAEFHSYVRPTKNPRLTSFCTALTG 155

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI---------------------------AH 97
           IT   +   P    +   F  +  E                                  H
Sbjct: 156 ITQAQVDAAPRLPEVLRHFDLWLREVVYPLCRRWRKEHLEGLNKCLKASQKRRFVYDETH 215

Query: 98  NA---------------KFDVG-FINAELQRINKDPLDP--SRIIDTLSIARRKHPSSRN 139
           N                 +D+  F+       +     P   R ++              
Sbjct: 216 NPGWIDCERMICMVTDGPWDMRKFMYECSVVRDGHLFPPLFYRWVNVRHSFAEHFRMRPR 275

Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            LN + ++ G++  H   H  + DS  ++ + I+++  G +++ 
Sbjct: 276 KLNDMLRKLGLSF-HGHPHSGIDDSRNIARIVIELLKRGYRVHH 318


>gi|269213888|ref|ZP_05983052.2| oligoribonuclease [Neisseria cinerea ATCC 14685]
 gi|269145276|gb|EEZ71694.1| oligoribonuclease [Neisseria cinerea ATCC 14685]
          Length = 188

 Score = 55.2 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 29/177 (16%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGR---KNSP 57
           + ++K      D+E TGL+ + DRIIE+  +            +V+ +  +         
Sbjct: 1   MMQDKNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDE 60

Query: 58  EALKLHGIT--DEFLKDKP-SFSSIFSEFWDF----FNEQNAEWIAHNAKFDVGFINAEL 110
                HG T   + +++   + + +  +  DF      E+      ++   D  F+   +
Sbjct: 61  WNTATHGRTGLTQRVRESSYTEAEVEQKLLDFMSEWIPERATPMCGNSIHQDRRFMVKYM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
            ++       +  + T              L  L KR+   ++     R  H AL D
Sbjct: 121 PKLENYFHYRNLDVST--------------LKELAKRWNPPVAKSVVKRGSHKALDD 163


>gi|304311523|ref|YP_003811121.1| Oligoribonuclease [gamma proteobacterium HdN1]
 gi|301797256|emb|CBL45476.1| Oligoribonuclease [gamma proteobacterium HdN1]
          Length = 184

 Score = 55.2 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 57/174 (32%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRK-NSP 57
           +   K   I  D+E TGLD   DRIIEI  V      +       F V            
Sbjct: 1   MTDRKTNLIWIDLEMTGLDPDQDRIIEIATVITNKDLEILAEGPVFAVHQPDEILNGMDE 60

Query: 58  EALKLHGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
                HG +          + D  + +       ++ + + +    ++   D  F+   +
Sbjct: 61  WCTTQHGKSGLTARVRASTVNDAQAEAQTIEFLKEWVDPRTSPICGNSICQDRRFLYRYM 120

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +       +  + TL  +A R HP +   L          IS +  H AL D
Sbjct: 121 PALEGYFHYRNLDVSTLKELAARWHPQA---LQ--------GISKKGSHLALDD 163


>gi|254672653|emb|CBA06469.1| oligoribonuclease [Neisseria meningitidis alpha275]
          Length = 215

 Score = 55.2 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 29/167 (17%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGR---KNSPEALKLHGIT- 66
            D+E TGL+ + DRIIE+  +            +V+ +  +              HG T 
Sbjct: 38  LDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTATHGRTG 97

Query: 67  -DEFLKD-KPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
             + +++   + + +  +  DF +E    +      ++   D  F+   + ++       
Sbjct: 98  LTQRVRESSHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLENYFHYR 157

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           +  + T              L  L KR+   ++     R  H AL D
Sbjct: 158 NLDVST--------------LKELAKRWNPPVAKSVVKRGSHKALDD 190


>gi|148228283|ref|NP_001088044.1| apoptosis enhancing nuclease [Xenopus laevis]
 gi|52354607|gb|AAH82831.1| LOC494737 protein [Xenopus laevis]
          Length = 264

 Score = 55.2 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 60/181 (33%), Gaps = 17/181 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G      RI E+    +++Y   +  +  ++ P          +  GIT 
Sbjct: 58  KCVAIDCEMVGTGP-GGRIGEVARCSIVNYRG-DVVYDKYINPE-LPIKNYRTRWSGITK 114

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + LK+   F +   E      ++    + H    D   +          P   +R    +
Sbjct: 115 QNLKNAIPFKTAQKEILKILKDKR--VVGHALHNDFKALKYFH------PSSQTRDTSKI 166

Query: 128 SIARRKHPSSRN---DLNSLC-KRYGITIS-HRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            + +       N    L +L     G  I    + H ++ D+    ++Y K++    +  
Sbjct: 167 PLLKEIAGLPSNNGASLKTLAFNLLGKRIQVGSNGHCSVEDAQACLELY-KLVEDQWEET 225

Query: 183 F 183
            
Sbjct: 226 L 226


>gi|302560513|ref|ZP_07312855.1| oligoribonuclease [Streptomyces griseoflavus Tu4000]
 gi|302478131|gb|EFL41224.1| oligoribonuclease [Streptomyces griseoflavus Tu4000]
          Length = 200

 Score = 55.2 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 65/171 (38%), Gaps = 28/171 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH 63
           R +  D E TGL   +D +IE+ A V   + +       + + P  R     P+ + ++H
Sbjct: 4   RMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDRALETMPQVVREMH 63

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINK 115
              G+  E L+   +         D+  E       A    ++   D GF+  ++  +  
Sbjct: 64  TASGLLTE-LEGGTTLEEAEQRVLDYIREHVKEPGKAPLCGNSVGTDRGFLLRDMPTL-- 120

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +     RI+D  SI   ARR +P          + Y  +      H AL D
Sbjct: 121 EDYLHYRIVDVSSIKELARRWYP----------RAYFNSPEKNGNHRALAD 161


>gi|322821651|gb|EFZ27916.1| exonuclease, putative [Trypanosoma cruzi]
          Length = 379

 Score = 55.2 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 64/224 (28%), Gaps = 51/224 (22%)

Query: 10  IVFDIETTGLDSK---NDRIIEIGAVELLDYS-KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           +V D E T   +       IIE   V +     +    F  ++ P    + +     L G
Sbjct: 96  LVCDFEATCDSASVAYPHEIIEFPVVCVDTAELRVVAEFHSYVRPTKNSRLTSFCTALTG 155

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI---------------------------AH 97
           IT   +   P    +   F  +  E                                  H
Sbjct: 156 ITQAQVDAAPRLPEVLRHFDLWLREVVYPLCRRWRKEHLEGLNKCLKASQKRRFVYDETH 215

Query: 98  NA---------------KFDVG-FINAELQRINKDPLDP--SRIIDTLSIARRKHPSSRN 139
           N                 +D+  F+       +     P   R ++              
Sbjct: 216 NPGWIDCERMICMVTDGPWDMRKFMYECSVVRDGHLFPPLFYRWVNVRHSFAEHFRMRPR 275

Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            LN + ++ G++  H   H  + DS  ++ + I+++  G +++ 
Sbjct: 276 KLNDMLRKLGLSF-HGHPHSGIDDSRNIARIVIELLKRGYRVHH 318


>gi|254369135|ref|ZP_04985147.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122085|gb|EDO66225.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 482

 Score = 55.2 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 26/195 (13%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEALKL 62
           +    + +D+ET+G+++  D++++  A+           F  F+   P+    SP A   
Sbjct: 3   SNQTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTP-SPMATIT 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP- 120
           H I+        +      +     N      I +N   FD   +     +    P    
Sbjct: 62  HHISIAQANTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDELLRFAFYKNMLPPYSHQ 121

Query: 121 ----SRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT---------------ISHRSKHG 159
                   D   I    +      LN        G                  S    H 
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNEVLNWPKAINEGGQEKTSLKLENLNQNNNLYSGGRAHD 181

Query: 160 ALLDSHLLSDVYIKM 174
           A+ D  +  ++  K+
Sbjct: 182 AITDVIVTVELAKKL 196


>gi|169776033|ref|XP_001822483.1| RNA binding protein (Arp) [Aspergillus oryzae RIB40]
 gi|83771218|dbj|BAE61350.1| unnamed protein product [Aspergillus oryzae]
          Length = 613

 Score = 55.2 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 81/256 (31%), Gaps = 56/256 (21%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAVELLDYSKTNRTFQ---VFLCPNGRKNSPE 58
           R IV  + TT    G+    D   +IE+G + L   +KT        V + P     +P 
Sbjct: 13  RYIVIHVATTCDEHGVYVTKDSAEVIELGWILL--DAKTCEELHRESVLVKPVNTPITPL 70

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-- 116
              L  +T E ++   +F    + F +F  E     I+ N +F    +++   R+     
Sbjct: 71  CTSLTTLTWEHVRSAGTFRDAIARFDEFAKEH---LISKNLEFAFVTLDSWDLRVQLPRE 127

Query: 117 ----------PLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGI-------TI 152
                      L  SR  D  +  +R         P   + L+++C    +        I
Sbjct: 128 ARDKAVVLPAYLQHSRTFDLRTEYQRWQTHHPESLPFGPSSLSNICAALEVEPVQTSAPI 187

Query: 153 SHR-SKH----------GALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP 201
            H    H           A+ ++  L+ V   ++      +                   
Sbjct: 188 KHNLPFHLQALAPASPRRAMEEAITLARVLRGLIRKSQPPHEH-----PEILTRPMDARA 242

Query: 202 NISLLKRDKPLFTRIT 217
           ++     ++     ++
Sbjct: 243 DVRAFLAERSKVLHLS 258


>gi|125526866|gb|EAY74980.1| hypothetical protein OsI_02878 [Oryza sativa Indica Group]
          Length = 304

 Score = 55.2 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 54/190 (28%), Gaps = 16/190 (8%)

Query: 9   KIVFDIETT---GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKLH 63
            +V D E T   G       IIE  AV +     +    F+ ++ P      +    +L 
Sbjct: 30  FVVVDFEATCERGRRIYPQEIIEFPAVLVDAATGRLVSAFRAYVRPRHHPRLTDFCRELT 89

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAE-------WIAHNAKFDVGFINAELQRINK- 115
           GI    +      +       ++               +          +  E +     
Sbjct: 90  GIAQGDVDAGVGLAEALLRHDEWLRAAGVVEGGGRFAVVTWGDADCRTMLEQECRFKGIA 149

Query: 116 DPLDPSRIIDTLSIARRKHPSS--RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            P    R +D              R  L    +  G+    R  H  L D+   + + ++
Sbjct: 150 KPAYFDRWVDLRVHFEAAFGGGGRRVKLQEAVRAAGLEWVGR-LHCGLDDACNTARLLVE 208

Query: 174 MMVGGSQINF 183
           ++  G  I+ 
Sbjct: 209 LLRRGVPISI 218


>gi|325302616|tpg|DAA34168.1| TPA_inf: hypothetical secreted protein 1605 [Amblyomma variegatum]
          Length = 151

 Score = 55.2 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 8/82 (9%)

Query: 9   KIVFDIETTGLDSKN----DRIIEIGAVELLDYS--KTNRTFQVFLCPNGRK-NSPEALK 61
            +V D E T    K       IIE   ++ ++ S  +T  TF  ++ P      +    +
Sbjct: 68  FLVLDFEATCSQQKGVPSPQEIIEFPVLK-VNGSTFETEATFHTYVEPQAHPELTAFCTE 126

Query: 62  LHGITDEFLKDKPSFSSIFSEF 83
           L GI  + +  +P  S + S+F
Sbjct: 127 LTGIIQDMVDGQPHLSQVLSDF 148


>gi|241759454|ref|ZP_04757558.1| oligoribonuclease Orn [Neisseria flavescens SK114]
 gi|241320236|gb|EER56569.1| oligoribonuclease Orn [Neisseria flavescens SK114]
          Length = 185

 Score = 55.2 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK----NSP 57
           + +N       D+E TGL+ ++DRIIE+  +             V++     +       
Sbjct: 1   MTQNANNLCWLDMEMTGLNPEHDRIIEVAMIITDSNLNVLAQSDVYVIHQSDELLNGMDE 60

Query: 58  EALKLHGIT--DEFLKD-KPSFSSIFSEFWDF----FNEQNAEWIAHNAKFDVGFINAEL 110
                HG T   + +++ K + + +      F      E++     ++   D  F+   +
Sbjct: 61  WNTTTHGRTGLTQRVRESKLTEAEVEQNLLGFMSAWIPEKSTPMCGNSIHQDRRFMVKYM 120

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R+       +  + TL  +A+R +P       ++ K    ++  R  H AL D
Sbjct: 121 PRLEAYFHYRNLDVSTLKELAKRWNP-------AVAK----SVVKRGSHKALDD 163


>gi|269977107|ref|ZP_06184081.1| oligoribonuclease [Mobiluncus mulieris 28-1]
 gi|307700139|ref|ZP_07637185.1| oligoribonuclease [Mobiluncus mulieris FB024-16]
 gi|269934938|gb|EEZ91498.1| oligoribonuclease [Mobiluncus mulieris 28-1]
 gi|307614688|gb|EFN93911.1| oligoribonuclease [Mobiluncus mulieris FB024-16]
          Length = 208

 Score = 55.2 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 61/178 (34%), Gaps = 28/178 (15%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNS--- 56
           M +      +  D E TGLD   D +IEIG  V   + +  +    + + P+        
Sbjct: 4   MTKALTDALVWVDCEMTGLDLATDELIEIGVIVTDFNLNPLDTGIDLLIKPSQTALDNMG 63

Query: 57  PEALKLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINA 108
               ++H   G+ DE L      +    +  ++          A    ++   D  F+  
Sbjct: 64  DFVREMHTKSGLLDE-LDHGLPVTEAARQVLEYVQRFVPEAGKAPLAGNSVGTDKTFLKK 122

Query: 109 ELQRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++   +       RI+D  SI   A R  P          K YGI       H AL D
Sbjct: 123 QMP--DFVDWLHYRIVDVSSIKELAARWFP----------KVYGIAPEKFGNHRALGD 168


>gi|190406098|gb|EDV09365.1| RNA exonuclease [Saccharomyces cerevisiae RM11-1a]
          Length = 269

 Score = 55.2 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 63/172 (36%), Gaps = 30/172 (17%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLC--PNGR-KNSPEAL 60
            D E TGLD  NDRIIEI  +    +         + +  ++  +   P    K +   +
Sbjct: 58  IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCI 117

Query: 61  KLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQR 112
           + H   G+T + L  + + + +  E  ++      ++       ++   D  F+  E  +
Sbjct: 118 EHHGNSGLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRLFMVREFPK 177

Query: 113 INKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +          + + + +ARR +P+ +                 + H A  D
Sbjct: 178 VIDHLFYRIVDVSSIMEVARRHNPALQAR----------NPKKEAAHTAYSD 219


>gi|237749183|ref|ZP_04579663.1| oligoribonuclease [Oxalobacter formigenes OXCC13]
 gi|229380545|gb|EEO30636.1| oligoribonuclease [Oxalobacter formigenes OXCC13]
          Length = 206

 Score = 55.2 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 60/180 (33%), Gaps = 39/180 (21%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLC------ 49
           +++M  I  D+E TGLD + DRIIE+  V                       L       
Sbjct: 28  RSEMNLIWVDLEMTGLDPETDRIIEVAVVVTDANLNVLAEGPVYAIHQSDAVLNGMDAWN 87

Query: 50  --PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
              +GR    + +K   IT+   +D      +     D+     +    +    D  F+ 
Sbjct: 88  KGTHGRSGLIDRVKASNITEAMAEDA-----LIDFLIDYVPRGKSPMCGNTICQDRRFMA 142

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGALLD 163
             + R+  +     R +D             + L  L +R+   +      + KH AL D
Sbjct: 143 KTMPRL--EAFFHYRNLDV------------STLKELARRWKPELIDGFKKQQKHTALAD 188


>gi|296314314|ref|ZP_06864255.1| oligoribonuclease [Neisseria polysaccharea ATCC 43768]
 gi|296838975|gb|EFH22913.1| oligoribonuclease [Neisseria polysaccharea ATCC 43768]
          Length = 187

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 31/178 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGR---KNS 56
           M  KN +     D+E TGL+ + DRIIE+  +            +V+ +  +        
Sbjct: 1   MQDKNNLCW--LDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMD 58

Query: 57  PEALKLHGIT--DEFLKD-KPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAE 109
                 HG T   + +++   + + +  +  DF +    E+      ++   D  F+   
Sbjct: 59  EWNTATHGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPERTTPMCGNSIHQDRRFMVKY 118

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           + ++       +  + T              L  L KR+   ++     R  H AL D
Sbjct: 119 MPKLENYFHYRNLDVST--------------LKELAKRWNPPVAKSVVKRGSHKALDD 162


>gi|15677698|ref|NP_274859.1| oligoribonuclease [Neisseria meningitidis MC58]
 gi|11133786|sp|Q9JXW1|ORN_NEIMB RecName: Full=Oligoribonuclease
 gi|7227120|gb|AAF42197.1| oligoribonuclease [Neisseria meningitidis MC58]
 gi|325133508|gb|EGC56171.1| oligoribonuclease [Neisseria meningitidis M13399]
 gi|325200921|gb|ADY96376.1| oligoribonuclease [Neisseria meningitidis H44/76]
 gi|325206775|gb|ADZ02228.1| oligoribonuclease [Neisseria meningitidis M04-240196]
          Length = 187

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 31/178 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG----RKNS 56
           M  KN +     D+E TGL+ + DRIIE+  +            +V+          K  
Sbjct: 1   MQDKNNLCW--LDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDDVLNKMD 58

Query: 57  PEALKLHGIT--DEFLKD-KPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAE 109
                 HG T   + +++   + + +  +  DF +E    +      ++   D  F+   
Sbjct: 59  EWNTATHGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKY 118

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           + ++       +  + T              L  L KR+   ++     R  H AL D
Sbjct: 119 MPKLENYFHYRNLDVST--------------LKELAKRWNPPVAKSVVKRGSHKALDD 162


>gi|317158676|ref|XP_001827168.2| RNA exonuclease [Aspergillus oryzae RIB40]
          Length = 350

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 64/172 (37%), Gaps = 16/172 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E   +    + ++++ AV++L            + P  +  +       G+T + 
Sbjct: 140 VAIDCEMVLVGPGQNEVVQVCAVDVLSGEIVVDKG---VVPT-KPVTDWCTPWSGMTPQR 195

Query: 70  LKDKPS-------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           L+D          +    +E   F +  +   + H  + DV  +  +  ++  D    ++
Sbjct: 196 LEDMKREGKTVNGWEEARAEVLKFVDG-DTILVGHALRNDVRALKMQHAKV-LDTATVTK 253

Query: 123 IIDTLSIARRKHPSSRNDLNSLCK-RYGITISH-RSKHGALLDSHLLSDVYI 172
              T  +       +R  L +LC+   GI I   R+ H  + D+    +V +
Sbjct: 254 HAVTNEMVGSGCKRTR-KLKTLCQDFLGINIQQSRNGHDCVEDTLATREVLL 304


>gi|281201272|gb|EFA75484.1| RNA exonuclease 2 [Polysphondylium pallidum PN500]
          Length = 451

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 23/168 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
           R I  D+E TGLD   D I+E+  +     L+  +      V +             + H
Sbjct: 274 RLIWVDLEMTGLDITKDHIMEMACIITDSELNVVEVGPELIVHIDDKDLNSMDQWCTEHH 333

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAELQRINKD 116
              G+T++  + K S      +  +F  +           ++   D  F+  E+      
Sbjct: 334 GQSGLTEKCRQSKLSIQDAEKQMVEFLRKHVDKGQCPLAGNSVHQDKRFLLKEMPLFADM 393

Query: 117 PLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                  + T+  + RR +PS  N L             R+ H  L D
Sbjct: 394 LHYRIVDVSTIKELVRRWYPSVANGLKK-----------RNLHRTLAD 430


>gi|169628623|ref|YP_001702272.1| oligoribonuclease [Mycobacterium abscessus ATCC 19977]
 gi|169240590|emb|CAM61618.1| Probable oligoribonuclease [Mycobacterium abscessus]
          Length = 208

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 63/177 (35%), Gaps = 27/177 (15%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG---RKNSP 57
           +   +   +  D E TGLD  +D++IEI A V   D +       V +  +        P
Sbjct: 1   MSAPRDELVWIDCEMTGLDLGSDKLIEIAALVTDGDLNILGEGVDVVIHADDAALAAMPP 60

Query: 58  EALKLH---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAE 109
               +H   G+T E      +     +   D+  +     + A    ++   D GFI  +
Sbjct: 61  VVADMHAKSGLTKEVRTSVVTLQEAEAMVLDYIRQHVASAKTAPLAGNSIATDRGFIARD 120

Query: 110 LQRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  +  D     R+ID  SI    RR +P            +G        H AL D
Sbjct: 121 MPEL--DAFLHYRMIDVSSIKELCRRWYPR---------IYFGQP-DKGLAHRALAD 165


>gi|118496683|ref|YP_897733.1| oligoribonuclease [Francisella tularensis subsp. novicida U112]
 gi|194323992|ref|ZP_03057767.1| exonuclease family protein [Francisella tularensis subsp. novicida
           FTE]
 gi|208780043|ref|ZP_03247386.1| exonuclease family protein [Francisella novicida FTG]
 gi|166216259|sp|A0Q414|ORN_FRATN RecName: Full=Oligoribonuclease
 gi|118422589|gb|ABK88979.1| oligoribonuclease (3'->5' exoribonuclease) [Francisella novicida
           U112]
 gi|194321889|gb|EDX19372.1| exonuclease family protein [Francisella tularensis subsp. novicida
           FTE]
 gi|208744047|gb|EDZ90348.1| exonuclease family protein [Francisella novicida FTG]
          Length = 178

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 23/163 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----SPEALKLH---G 64
            D+E TGLD  + +IIEI A+            +        +     +   +K+H   G
Sbjct: 10  IDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIHQSDEILNSMNEWCIKVHCETG 69

Query: 65  IT----DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +T    D  +  + +   I      F   Q++    ++   D  F+   + +I++     
Sbjct: 70  LTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPKIDEYCHYR 129

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              + TL +  +     +                ++ H AL D
Sbjct: 130 MLDVTTLKLLNQYWGDGKG------------FEKKNTHKALDD 160


>gi|114623465|ref|XP_519596.2| PREDICTED: histone mRNA 3' end-specific exonuclease isoform 2 [Pan
           troglodytes]
          Length = 298

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 9   KIVFDIETT---GLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKL 62
             + D E T   G   +    IIE   V L  +  +   TFQ ++ P    + S   + L
Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQ 90
            GIT + +    +F  +  +  D+   +
Sbjct: 190 TGITQDQVDRADTFPQVLKKVIDWMKLK 217


>gi|89256131|ref|YP_513493.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314604|ref|YP_763327.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502153|ref|YP_001428218.1| exonuclease [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167009834|ref|ZP_02274765.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367455|ref|ZP_04983481.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           257]
 gi|290953267|ref|ZP_06557888.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295313509|ref|ZP_06804104.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89143962|emb|CAJ79183.1| Exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129503|gb|ABI82690.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253271|gb|EBA52365.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           257]
 gi|156252756|gb|ABU61262.1| exonuclease [Francisella tularensis subsp. holarctica FTNF002-00]
          Length = 482

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 26/195 (13%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEALKL 62
           +    + +D+ET+G+++  D++++  A+           F  F+   P+    SP A   
Sbjct: 3   SNQTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFNFFVKLNPDTTP-SPMATIT 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP- 120
           H I+        +      +     N      I +N   FD   +     +    P    
Sbjct: 62  HHISIAQANTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDELLRFAFYKNMLPPYSHQ 121

Query: 121 ----SRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT---------------ISHRSKHG 159
                   D   I    +      LN        G                  S    H 
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNEVLNWPKAINEGGQEKTSLKLENLNQNNNLYSGGRAHD 181

Query: 160 ALLDSHLLSDVYIKM 174
           A+ D  +  ++  K+
Sbjct: 182 AITDVIVTVELAKKL 196


>gi|83775916|dbj|BAE66035.1| unnamed protein product [Aspergillus oryzae]
          Length = 368

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 64/172 (37%), Gaps = 16/172 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E   +    + ++++ AV++L            + P  +  +       G+T + 
Sbjct: 158 VAIDCEMVLVGPGQNEVVQVCAVDVLSGEIVVDKG---VVPT-KPVTDWCTPWSGMTPQR 213

Query: 70  LKDKPS-------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           L+D          +    +E   F +  +   + H  + DV  +  +  ++  D    ++
Sbjct: 214 LEDMKREGKTVNGWEEARAEVLKFVDG-DTILVGHALRNDVRALKMQHAKV-LDTATVTK 271

Query: 123 IIDTLSIARRKHPSSRNDLNSLCK-RYGITISH-RSKHGALLDSHLLSDVYI 172
              T  +       +R  L +LC+   GI I   R+ H  + D+    +V +
Sbjct: 272 HAVTNEMVGSGCKRTR-KLKTLCQDFLGINIQQSRNGHDCVEDTLATREVLL 322


>gi|328873520|gb|EGG21887.1| nucleotide binding protein 1-like protein [Dictyostelium
           fasciculatum]
          Length = 879

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 62/175 (35%), Gaps = 24/175 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT---FQVFLCPNGRKNSP 57
           M R N  R I  D+E TGLD   DRI+EI  +   D  +         V++         
Sbjct: 98  MSRDN--RLIWVDLEMTGLDITKDRIMEIACIVTDDNLQVIEAGPDLCVYIDDAALDGMG 155

Query: 58  EALKLH----GITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAE 109
           +  K H    G+T    + K S         +F  +           +    D  F+  E
Sbjct: 156 KWCKEHHGDSGLTQRCRESKISIQEAEKIMVEFLAKHVHKGMCPLAGNTVHEDKKFLLKE 215

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +    +        + T+  +ARR +P       ++ ++  +    R  H +L D
Sbjct: 216 MPLFAEYLHYRIVDVSTIKELARRWYP-------NVMEKAPVK---RYLHRSLAD 260


>gi|320590733|gb|EFX03176.1| RNA-binding protein [Grosmannia clavigera kw1407]
          Length = 616

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 80/244 (32%), Gaps = 34/244 (13%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R +V  + TT    G+    D   +IEIG +  +  +  +  R   V + P     +P  
Sbjct: 13  RYVVIHVATTCDEHGVYVTKDSAEVIEIGWILLDAKNLEELYRE-SVLVKPINTPITPLC 71

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
             L  +T E +++  +F    + F  F +E      + +  F    ++A   R+      
Sbjct: 72  TSLTTLTWEHVRNAGTFRDAINRFDAFASEH---LTSQSLDFVFVTLDAWDLRVQLPREA 128

Query: 116 --------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGITISHRSKHGA 160
                     L  SR  D     +R         P   + L+++C           +  A
Sbjct: 129 RDKAVVLPPYLQHSRTFDLRQEYQRWQQHHPESLPFGPSSLSNICAALEALAPASPR-RA 187

Query: 161 LLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITK 218
           + ++  L+ V   ++      +                +  +   S +     L    T+
Sbjct: 188 MEEAVTLARVLRGLIRKSQPAHEHPDVLARPMDARADVRAFLSERSKVLHMSGLPHDTTQ 247

Query: 219 EELD 222
            EL+
Sbjct: 248 SELE 251


>gi|316985472|gb|EFV64419.1| exonuclease family protein [Neisseria meningitidis H44/76]
 gi|325139523|gb|EGC62063.1| oligoribonuclease [Neisseria meningitidis CU385]
 gi|325143758|gb|EGC66075.1| oligoribonuclease [Neisseria meningitidis M01-240013]
          Length = 203

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 29/167 (17%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG----RKNSPEALKLHGIT- 66
            D+E TGL+ + DRIIE+  +            +V+          K        HG T 
Sbjct: 26  LDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDDVLNKMDEWNTATHGRTG 85

Query: 67  -DEFLKD-KPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
             + +++   + + +  +  DF +E    +      ++   D  F+   + ++       
Sbjct: 86  LTQRVRESSHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLENYFHYR 145

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           +  + T              L  L KR+   ++     R  H AL D
Sbjct: 146 NLDVST--------------LKELAKRWNPPVAKSVVKRGSHKALDD 178


>gi|146181163|ref|XP_001022261.2| exonuclease family protein [Tetrahymena thermophila]
 gi|146144274|gb|EAS02016.2| exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 200

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 68/189 (35%), Gaps = 13/189 (6%)

Query: 1   MIRKNKMRKIVF-DIET-TGLDSKN-DRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-N 55
           M + N +  +V  D E  +G+       IIE    +  +   K  + F  F+ P      
Sbjct: 1   MDKLNCIDYLVISDFECNSGMKGFVLHEIIEFPIVIVDVKNKKIIKEFTTFVKPTYHPKL 60

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINA--E 109
           +     L  I  + +   P+ S +F            + ++ +   +   D  ++ A   
Sbjct: 61  TNFIKNLTYIEQKDVDQAPTISEVFEIITQEIKQNTNDSDSTFFIFDCDSDATYLRAEIN 120

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
           L+ +   P   ++  +   +  R        L ++ K   +T +    H AL D+  +  
Sbjct: 121 LKNLKHSPYF-NQYFNLKELFDRFFNVKAKSLENMLKILNLTQTGH-PHIALHDARNICQ 178

Query: 170 VYIKMMVGG 178
           V + M+  G
Sbjct: 179 VVMCMLEKG 187


>gi|298251766|ref|ZP_06975569.1| ATP-dependent DNA helicase, RecQ family [Ktedonobacter racemifer
           DSM 44963]
 gi|297546358|gb|EFH80226.1| ATP-dependent DNA helicase, RecQ family [Ktedonobacter racemifer
           DSM 44963]
          Length = 3126

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 27/175 (15%)

Query: 10  IVFDIETTGLDSK---NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +V D E      +     R++E+ AV     ++       +      +    + K+    
Sbjct: 788 VVIDTE-NDYQPEAAPGSRLVEVAAVRFKGNTE----LSTY--NAVVRRDFHSQKV---- 836

Query: 67  DEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAK-FDVGFINAELQRINKDPLDP 120
                +  +   +  E   F N     +       HN   FD   + A         ++ 
Sbjct: 837 ANRQAEAKNIDIVAYELNTFINETYTQDHPVILAGHNFAAFDATHLRAV-----GVSIED 891

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           ++IIDTL  +R  +P    ++L  +C  + +     + H AL D+   + +   +
Sbjct: 892 NQIIDTLEFSRLLYPDILTHNLGEMCALHQVDFIG-TAHNALPDAQNNARLLYAL 945


>gi|149502446|ref|XP_001508485.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 438

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 68/178 (38%), Gaps = 16/178 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D E  G+ ++ +  + +  V +++ + K    +  F+ P  +        + GI 
Sbjct: 260 RAVAMDCEMVGVGAQGEESV-LARVSIVNQFGKCV--YDKFVKPTEKVTDYRTT-VSGIR 315

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +++   +  +  E  +    +    + H    D+  +  +  +         +    
Sbjct: 316 PEDVRNGEDYRVVQQEVANLLKGR--ILVGHALHNDLKILLLDHPKKKIRDTQKYKPF-- 371

Query: 127 LSIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
               +++  S R  L  LC++  G+ +  +++H ++ D+     +Y  M+    +   
Sbjct: 372 ----KKEVKSGRPSLKLLCEKLLGVKV-QKAEHCSVQDAQAAMRLY-TMVKRQWETAV 423


>gi|332878806|ref|ZP_08446521.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683157|gb|EGJ56039.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 183

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 12/172 (6%)

Query: 8   RKIVFDIETT---GLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALK 61
           + I+ D+E T   G+  K +   IIEIG   L     + +    + + P   K SP   +
Sbjct: 4   KIIIIDLEATCWEGIPPKGEVSEIIEIGICLLDTLTGEISDNRGILVKPTHSKISPFCTQ 63

Query: 62  LHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           L  IT E + ++  SF     +      +      A    +D   +  +           
Sbjct: 64  LTTITPELVAREGVSFEKAL-QILKREYQAYQYTWASYGNYDKNMLQKQCALRKLPYPMR 122

Query: 121 SRIIDTLSIARRKHPSSRNDLN--SLCKRYGITISHRSKHGALLDSHLLSDV 170
           +  I+   + +      +  L          I +   + H    D++ ++ +
Sbjct: 123 NEHINVKELFQEVTQHPK-RLGMHQALNYLKIPLVG-THHRGKDDAYNIAKI 172


>gi|332375352|gb|AEE62817.1| unknown [Dendroctonus ponderosae]
          Length = 304

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 17/140 (12%)

Query: 9   KIVFDIETTGLDS---KNDRIIEIGAVELLDYS-------KTNRTFQVFLCPNGRKNSPE 58
               D+ETTGL S      +I E+  + +           +    F +   P  +  S  
Sbjct: 7   FAFIDLETTGLPSMELNRTKITELTILAIQADHLELGCLPRVQNKFTLCFNP-RKLVSSG 65

Query: 59  ALKLHGITDEFLKDKPSFSS----IFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRI 113
           + ++ G+++  L+    FS       +EF    N      +AHN   FD   +  E+ + 
Sbjct: 66  SEEITGLSNSILEHLRPFSDGTVTALNEFLRH-NPTPICLVAHNGNKFDYPILRTEINKS 124

Query: 114 NKDPLDPSRIIDTLSIARRK 133
            +  LD    +D+L   R+ 
Sbjct: 125 GQKLLDGVLCVDSLEAFRQL 144


>gi|261400541|ref|ZP_05986666.1| oligoribonuclease [Neisseria lactamica ATCC 23970]
 gi|269209608|gb|EEZ76063.1| oligoribonuclease [Neisseria lactamica ATCC 23970]
          Length = 187

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 31/178 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG----RKNS 56
           M  KN +     D+E TGL+ + DRIIE+  +            +V+          K  
Sbjct: 1   MQDKNNLCW--LDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDDVLNKMD 58

Query: 57  PEALKLHGIT--DEFLKDK-PSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAE 109
                 HG T   + +++   + + +  +  DF +E    +      ++   D  F+   
Sbjct: 59  EWNTATHGRTGLTQRVRESLHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKY 118

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           + ++       +  + T              L  L KR+   ++     R  H AL D
Sbjct: 119 MPKLENYFHYRNLDVST--------------LKELAKRWNPPVAKSVVKRGSHKALDD 162


>gi|256080349|ref|XP_002576444.1| 3'-5' exonuclease [Schistosoma mansoni]
 gi|238661712|emb|CAZ32681.1| 3'-5' exonuclease eri1-related [Schistosoma mansoni]
          Length = 224

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 28/188 (14%)

Query: 14  IETTGLD---SKNDRIIEIGAVELLDYSKT-NRTFQVFLCP-NGRKNSPEALKLHGITDE 68
            E+T  +    K   IIE   V L   + T   +FQ F+ P    + S     L GI   
Sbjct: 29  FESTCFEDDIKKPAEIIEFPVVILDSVTGTLIDSFQSFVKPTENPELSVFCSNLTGIQQC 88

Query: 69  FLKDKPSFSSIFSEFWDFFNEQ-------------NAEWIAHNAKFDVGFINAELQRINK 115
            +++ P+ + +  +F  +  +              +A ++     +D+     +  R  K
Sbjct: 89  DVENAPTLAVVLRKFEHWLRKAKENLGCSFKGQPTSAIFVTW-TDWDISTCLWDECRRKK 147

Query: 116 DPLDPS--------RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            PL            I      + +     R  L       G+    R  H  + D+   
Sbjct: 148 LPLPGDMLNRIDLKAIFQQWLGSHKIGQKWRGGLKDALNLIGLHFEGR-PHRGIDDARNT 206

Query: 168 SDVYIKMM 175
           S + + ++
Sbjct: 207 SRLLLHLL 214


>gi|242014597|ref|XP_002427973.1| oligoribonuclease, putative [Pediculus humanus corporis]
 gi|212512472|gb|EEB15235.1| oligoribonuclease, putative [Pediculus humanus corporis]
          Length = 196

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 30/178 (16%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFL--CPNGRKNSPE 58
           ++    R I  D+E TGL+ + D I+E+  +    D +  N      +    N  K+  E
Sbjct: 16  LKMTLDRYIWIDLEMTGLNPETDTILEVACIITEPDLNPLNEGMHFVIHQNDNVLKSMNE 75

Query: 59  ALKLH----GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAE 109
              +H    G+  E      S   +  + +++       +       ++   D+ F+   
Sbjct: 76  WCLVHHEKSGLISESRASPHSLKDVEEKLFNYIKSNTFIDGTNYLAGNSVYMDLLFLKKY 135

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR-YGITISH---RSKHGALLD 163
           +  I        R+ID             + L  LC   Y   + +      H AL D
Sbjct: 136 MPSI--PTFLHYRLIDV------------SSLKVLCNHWYSYELKNCKKEVSHRALDD 179


>gi|195997735|ref|XP_002108736.1| hypothetical protein TRIADDRAFT_19790 [Trichoplax adhaerens]
 gi|190589512|gb|EDV29534.1| hypothetical protein TRIADDRAFT_19790 [Trichoplax adhaerens]
          Length = 181

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 15/164 (9%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I  D E  G+     +   +  V +++ Y +T   +  ++ P  +        + GI  +
Sbjct: 7   IALDCEMVGIGYDG-KESALARVSIVNSYGETI--YDKYVKPIEKVTDYR-TPVSGIIAD 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L + P F+++ +E ++    Q    + H  K D+  +      +   P    R   T S
Sbjct: 63  NLLNAPDFATVQTEVFEII--QGRTLVGHAIKNDLKQL------MLGHPKKRLRDTSTFS 114

Query: 129 IARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVY 171
             R+ +      L  L K   G+ I    +H ++ D+     +Y
Sbjct: 115 FFRQVNKGHTPSLRKLAKEILGLDI-QIGQHSSVEDARACIQLY 157


>gi|254497022|ref|ZP_05109853.1| DNA polymerase III subunit epsilon [Legionella drancourtii LLAP12]
 gi|254353760|gb|EET12464.1| DNA polymerase III subunit epsilon [Legionella drancourtii LLAP12]
          Length = 112

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 7/112 (6%)

Query: 48  LCPNGRKNSPEALKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           +   G+   PE  K+ GI +E +     ++  +     D     +   I HNA+FD  F+
Sbjct: 1   MNDPGKPIPPEITKITGIHNEDVVGKAINWDFVLQALKD-----SHVIICHNAQFDRNFL 55

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSK 157
             +     +  +       T+     K  +   + L+ L  + G        
Sbjct: 56  ELQTPEKIQKKVISLPFGCTIKDIDWKERNYESSKLDYLNWKLGYFYDGHDP 107


>gi|237711880|ref|ZP_04542361.1| predicted protein [Bacteroides sp. 9_1_42FAA]
 gi|317474976|ref|ZP_07934245.1| hypothetical protein HMPREF1016_01224 [Bacteroides eggerthii
           1_2_48FAA]
 gi|229454575|gb|EEO60296.1| predicted protein [Bacteroides sp. 9_1_42FAA]
 gi|316908879|gb|EFV30564.1| hypothetical protein HMPREF1016_01224 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 255

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 61/209 (29%), Gaps = 57/209 (27%)

Query: 1   MIRKNKMRKIV---FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR--- 53
           M  + + +  V    D ET GLD +     +I    +  D  +    +Q ++ P G+   
Sbjct: 1   MAPQTEQKIYVGIGLDFETGGLDCRECACTQIALQAVRFDTWQVFDRYQAYIAPYGKQDA 60

Query: 54  -----------------------KNSPEALKLHGITDEFLKDKP-SFSSIFSEFWDFFN- 88
                                  K    AL    IT E L+ +      +  E   F   
Sbjct: 61  GLPRRKVLRTRHEQAKGQEYVPMKYEQAALDYSAITMEMLRTQGMDMKKVAGEVIAFAKR 120

Query: 89  -------EQNAEWIAHNAKFDVGFINAELQRINKDPL--------------DPSRIIDTL 127
                  +     +  N  FD+GF+   +                           IDTL
Sbjct: 121 ATLSKGNQCKPVLVGQNIAFDIGFLQQLVNYAGLAAEFEKTFSGSRDYYGNFQPHYIDTL 180

Query: 128 SIARRKHPS----SRNDLNSLCKRYGITI 152
           ++ R    +    +   L  +  R G+ +
Sbjct: 181 ALGRLAFAADPEVTSYKLELVASRLGVEL 209


>gi|51013461|gb|AAT93024.1| YLR059C [Saccharomyces cerevisiae]
          Length = 269

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 63/172 (36%), Gaps = 30/172 (17%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLC--PNGR-KNSPEAL 60
            D E TGLD  NDRIIEI  +    +         + +  ++  +   P    K +   +
Sbjct: 58  IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCI 117

Query: 61  KLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQR 112
           + H   G+T + L  + + + +  E  ++      ++       ++   D  F+  E  +
Sbjct: 118 EHHGNSGLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRLFMVREFPK 177

Query: 113 INKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +          + + + +ARR +P+ +                 + H A  D
Sbjct: 178 VIDRLFYRIVDVSSIMEVARRHNPALQAR----------NPKKEAAHTAYSD 219


>gi|308177366|ref|YP_003916772.1| oligoribonuclease [Arthrobacter arilaitensis Re117]
 gi|307744829|emb|CBT75801.1| putative oligoribonuclease [Arthrobacter arilaitensis Re117]
          Length = 203

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 24/175 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG---RKNSP 57
           +  N  + +  D E TGLD  ND +IE+   +   D    +   QV + P      +   
Sbjct: 1   MASNSEKIVWIDCEMTGLDLVNDALIEVAVLITDSDLQIVDEGIQVVIKPEPAALAQMDD 60

Query: 58  EALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAE 109
               +H   G+  E L++  +         D+  +       A    ++   D  F+  +
Sbjct: 61  FVRNMHMVSGLLPE-LENGIAMDEAQRLVIDYIKKHVPEPNKALLGGNSVGTDKNFLARD 119

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + +        + TL  ++RR  P +               +    H AL D
Sbjct: 120 MPEVIEHLHYRIIDVSTLKELSRRWFPKAHYS----------APAKTGNHRALGD 164


>gi|186475543|ref|YP_001857013.1| oligoribonuclease [Burkholderia phymatum STM815]
 gi|184192002|gb|ACC69967.1| Exonuclease RNase T and DNA polymerase III [Burkholderia phymatum
           STM815]
          Length = 207

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 37/177 (20%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAV-------ELLDYSK--TNRTFQVF--LCPNGRK 54
            M  +  D+E TGLD  NDRIIEI  V       ++++      +++ +    +    + 
Sbjct: 16  DMNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDKMVEGPVLAIHQSDETLGKMDDWNKN 75

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAEL 110
               +    G+ D       + +        F  +      +    ++   D  F+   +
Sbjct: 76  THGRS----GLIDRVRASTVTEADATERIRAFLGQHVPPGKSPMCGNSICQDRRFMARWM 131

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
             +  +     R +D             + L  LC+R+   I      R+ H AL D
Sbjct: 132 PEL--ETFFHYRNLDV------------STLKELCRRWQPAIYKGFQKRAMHTALAD 174


>gi|195015731|ref|XP_001984262.1| GH15107 [Drosophila grimshawi]
 gi|193897744|gb|EDV96610.1| GH15107 [Drosophila grimshawi]
          Length = 263

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 58/174 (33%), Gaps = 14/174 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +  + R +  D E  G+      D +  +  V        ++    ++ P  +       
Sbjct: 84  KAQRNRYLAMDCEMVGVSHNGCEDMLARVSIVNKRGEVLLDK----YVKP-RQPVVDYRT 138

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            + GI    +++   F ++ +E       Q    + H  + D+G ++ +    +      
Sbjct: 139 SVSGIRPHDIENGEDFKAVQAEVAKML--QGKILVGHALRKDLGVLSIKHPVAHIRDTSR 196

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            + +  L          R  L+ L    G  I     H ++ D+     VY ++
Sbjct: 197 YKPLCKLVSNGHTPSLKRLTLSVL----GQEIQTGE-HSSVEDARAAMGVYNRI 245


>gi|19553671|ref|NP_601673.1| oligoribonuclease [Corynebacterium glutamicum ATCC 13032]
 gi|62391312|ref|YP_226714.1| oligoribonuclease [Corynebacterium glutamicum ATCC 13032]
 gi|23821913|sp|Q8NMU1|ORN_CORGL RecName: Full=Oligoribonuclease
 gi|21325244|dbj|BAB99866.1| Oligoribonuclease (3'->5' exoribonuclease) [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326653|emb|CAF21135.1| Oligoribonuclease (3'->5' exoribonuclease) [Corynebacterium
           glutamicum ATCC 13032]
          Length = 219

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 56/175 (32%), Gaps = 27/175 (15%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCP---NGRKNSPEA 59
               R +  D+E TGLD K   I+E+ A V   + +       + +        +     
Sbjct: 14  ARDDRLVWVDLEMTGLDLKRHVIVEVAALVTDANLNVLGEGVDLVVHATEEELAQMDDFV 73

Query: 60  LKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQ 111
             +H   G+T++  +   +             +       A    ++   D  FI   + 
Sbjct: 74  TNMHESSGLTEQIRESAVTLKEAEDAVLALIEKHCDPAHPAPLAGNSIATDRAFIREHMP 133

Query: 112 RINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           R+  D     R++D  S+   ARR +P                      H AL D
Sbjct: 134 RL--DEALHYRMVDVSSVKELARRWYPRVYYK----------QPEKGLAHRALAD 176


>gi|324999723|ref|ZP_08120835.1| oligoribonuclease [Pseudonocardia sp. P1]
          Length = 213

 Score = 55.2 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 27/171 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNS--PEALK-LH 63
           R +  D E TGLD  +D +IEI A+              V +  +  +    P+ ++ +H
Sbjct: 4   RLVWIDCEMTGLDLGSDALIEIAALVTDGDLNVLGEGVDVVIACDDAQLDAMPDVVRDMH 63

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQRINK 115
              G+T+E      + +        +      + + A    ++   D GF+  ++Q +  
Sbjct: 64  ARSGLTEEVRAATVTIAEAEERVLAYIRAHVPDARTAPLAGNSIATDRGFLARDMQEL-- 121

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           D     R+ID  S+   ARR  P          + +         H AL D
Sbjct: 122 DAYLHYRMIDVSSVKELARRWFP----------RVFYAKPEKGLAHRALAD 162


>gi|313669085|ref|YP_004049369.1| oligoribonuclease [Neisseria lactamica ST-640]
 gi|313006547|emb|CBN88011.1| putative oligoribonuclease [Neisseria lactamica 020-06]
          Length = 187

 Score = 55.2 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 31/178 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGR---KNS 56
           M  KN +     D+E TGL+ + DRIIE+  +            +V+ +  +        
Sbjct: 1   MQDKNNLCW--LDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMD 58

Query: 57  PEALKLHGIT--DEFLKD-KPSFSSIFSEFWDF----FNEQNAEWIAHNAKFDVGFINAE 109
                 HG T   + +++   + + +  +  DF      E+      ++   D  F+   
Sbjct: 59  EWNTATHGRTGLTQRVRESSHTEAEVEQKLLDFMSEWIPERATPMCGNSIHQDRRFMVKY 118

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           + ++       +  + T              L  L KR+   ++     R  H AL D
Sbjct: 119 MPKLENYFHYRNLDVST--------------LKELAKRWNPPVAKSVVKRGSHKALDD 162


>gi|213962982|ref|ZP_03391241.1| exonuclease, RNase T and DNA polymerase III [Capnocytophaga
           sputigena Capno]
 gi|213954323|gb|EEB65646.1| exonuclease, RNase T and DNA polymerase III [Capnocytophaga
           sputigena Capno]
          Length = 183

 Score = 55.2 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 12/172 (6%)

Query: 8   RKIVFDIETT---GLDSKND--RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALK 61
           + I+ D+E T   G+  K +   IIEIG   L     + +    + + P   K SP   +
Sbjct: 4   KIIIIDLEATCWEGIPPKGEVSEIIEIGICLLDTLTGEISDNRGILIKPTHSKISPFCTQ 63

Query: 62  LHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           L  +T E + ++  SF   F      +      W A    +D   +  +           
Sbjct: 64  LTTLTPELVAREGVSFEEAFQILKKEYQAYQYTW-ASYGNYDRNMLQKQCALRKLPYPMR 122

Query: 121 SRIIDTLSIARRKHPSSRNDLN--SLCKRYGITISHRSKHGALLDSHLLSDV 170
           +  I+   + +      +  L          I +   + H    D++ ++ +
Sbjct: 123 NEHINVKELFQEVTQHPK-RLGMHQALNYLKIPLVG-THHRGKDDAYNIAKI 172


>gi|325127521|gb|EGC50447.1| oligoribonuclease [Neisseria meningitidis N1568]
 gi|325129519|gb|EGC52346.1| oligoribonuclease [Neisseria meningitidis OX99.30304]
 gi|325201497|gb|ADY96951.1| oligoribonuclease [Neisseria meningitidis M01-240149]
 gi|325207477|gb|ADZ02929.1| oligoribonuclease [Neisseria meningitidis NZ-05/33]
          Length = 187

 Score = 55.2 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 31/178 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGR---KNS 56
           M  KN +     D+E TGL+ + DRIIE+  +            +V+ +  +        
Sbjct: 1   MQDKNNLCW--LDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMD 58

Query: 57  PEALKLHGIT--DEFLKD-KPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAE 109
                 HG T   + +++   + + +  +  DF +E    +      ++   D  F+   
Sbjct: 59  EWNTATHGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKY 118

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           + ++       +  + T              L  L KR+   ++     R  H AL D
Sbjct: 119 MPKLENYFHYRNLDVST--------------LKELAKRWNPPVAKSVVKRGSHKALDD 162


>gi|330921394|ref|XP_003299409.1| hypothetical protein PTT_10386 [Pyrenophora teres f. teres 0-1]
 gi|311326939|gb|EFQ92494.1| hypothetical protein PTT_10386 [Pyrenophora teres f. teres 0-1]
          Length = 358

 Score = 55.2 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 57/168 (33%), Gaps = 12/168 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGIT 66
           + +  D E  G+  + +R   +  V L+++   ++ +  ++  P   + +     + GI 
Sbjct: 150 KYVALDCEMVGVGPEPNRDSALARVSLVNFHG-HQIYDSYVQVPRQVQVTDYRTAVSGIE 208

Query: 67  DEFLKD--KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
              L+      F  + ++            + H  K D+  +  +  +            
Sbjct: 209 PRHLRKDVARPFDEVRNDIK--ILLAGRILVGHAVKNDLDVLILKHDKRFIRDTSKFSKF 266

Query: 125 DTLSIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVY 171
             L+      P     L  L ++  G+ I     H ++ D+     ++
Sbjct: 267 RALA----MIPGRTPGLKLLAEKLLGVEI-QVGAHSSVEDARATMAIF 309


>gi|297156433|gb|ADI06145.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           bingchenggensis BCW-1]
          Length = 188

 Score = 55.2 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 21/177 (11%)

Query: 1   MIRKNKMRKIVFDIETT---GLDSKN--DRIIEIGAVELLD--YSKTNRTFQVFLCPNGR 53
           M R    R +V D+E T   G   +     IIEIG  EL      +  R   + + P   
Sbjct: 1   MARLRLDRILVVDVEATCWDGPAPEGMESEIIEIGLCELDVATGERPVRR-SLMVRPEHS 59

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             SP   +L  IT E       F+       D  +       A   ++D      +    
Sbjct: 60  TVSPFCTELTTITPEQAAAGIGFAEACEILRDE-HGAGHRVWASWGEYDRAQFTRQSSAT 118

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNS------LCKRYGITISHRSKHGALLDS 164
           N      +R ++     +  + S  + L+            G+++   + H  + D+
Sbjct: 119 NIRYPFGTRHLNV----KNLY-SLMHSLDRELGMAGALSHAGLSLEG-THHRGVDDA 169


>gi|254442129|ref|ZP_05055605.1| exonuclease superfamily [Verrucomicrobiae bacterium DG1235]
 gi|198256437|gb|EDY80745.1| exonuclease superfamily [Verrucomicrobiae bacterium DG1235]
          Length = 193

 Score = 55.2 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 61/176 (34%), Gaps = 35/176 (19%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP--EALK 61
            +K R    D+E TGLD   DRI+E   +      +    ++  +           +  K
Sbjct: 1   MSKRRYCWIDLEMTGLDPATDRIVEAAVIITNKQLEPVFEWESAVRQPQEVLEGMNDWCK 60

Query: 62  LH------------GITDEFLKDKPSFSSIFSEF-WDFFNEQNAEWIAHNA-KFDVGFIN 107
            H            GIT+E L DK       +E    +F + N   IA N+   D  FI+
Sbjct: 61  HHHAESGLLDRIQDGITEEELDDK------LAEITLKYFKKNNPCVIAGNSIAQDRKFID 114

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             L +         R++D +S  +              +  G      + H AL D
Sbjct: 115 RYLPKF--SERIHYRMLD-VSSFKIVFR----------EMLGREFKKENSHRALDD 157


>gi|225020189|ref|ZP_03709381.1| hypothetical protein CORMATOL_00191 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946933|gb|EEG28142.1| hypothetical protein CORMATOL_00191 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 367

 Score = 55.2 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 34/178 (19%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +   ++TTG+     +++ I AV L    + +  F   L      + P    +HG+
Sbjct: 11  RTPFVAVTVKTTGIHPSTAQLVVIDAVVLTASGEPDSDFHAVL---SVPDDPGPKHMHGL 67

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN------------------ 107
           + E + D  SFSSI        + +    I HN     GFI+                  
Sbjct: 68  SREEIADGKSFSSILKALGKTIDGR--TMITHNVPLVWGFIHKEARRAMTAAARANRRRG 125

Query: 108 -----AELQRINKDPLDPSRIIDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSK 157
                   QR+   P  P  I+D L+ ARR+    P +R    ++ +  G+     + 
Sbjct: 126 SRGKPRRRQRVGHVP-RPVGIVDMLATARRRGVDLPDTRIR--TVARMLGVECEPATA 180


>gi|39944242|ref|XP_361658.1| hypothetical protein MGG_04132 [Magnaporthe oryzae 70-15]
 gi|145014866|gb|EDJ99434.1| hypothetical protein MGG_04132 [Magnaporthe oryzae 70-15]
          Length = 345

 Score = 55.2 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
           + +  D E  G+       I +  V ++D+   N+ +   + P  G   +     + G++
Sbjct: 156 KYVGIDCEMVGIGPGGHESI-LARVSVVDFHG-NQVYDSLVRPRPGVVVTDWRTHVSGVS 213

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              ++    F  + ++  +    +    + H+ + D+  +      +   P D     DT
Sbjct: 214 ARDMRFARDFDEVQTQVAELL--RGKIVVGHDIRHDLAVLG-----LGHPPKDVR---DT 263

Query: 127 LSIA--RRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIK 173
              +  R+     +  +  L K   G+ I     H ++ D+ +   ++ +
Sbjct: 264 AKFSGFRKYGNGPKPAMRILAKEILGLEIQDGQ-HSSVEDARVAMLLFRR 312


>gi|256375737|ref|YP_003099397.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
 gi|255920040|gb|ACU35551.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
          Length = 180

 Score = 54.8 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 14/166 (8%)

Query: 8   RKIVFDIETT---GLDSKN--DRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +V D+E T   G         IIEIG  E  +   +      + + P   + SP    
Sbjct: 7   RVLVVDVEATCWEGAPPGGQVSDIIEIGVCEYDVALGERVERHSLLVRPTRSEVSPFCTS 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLD 119
           L  +T E +     F    +   +  + +     A    +D      +   +        
Sbjct: 67  LTTLTQEQVGRGVDFGVACARLRELGSRER--VWASYGDYDRNQFQRQCADLGVAYPFGP 124

Query: 120 PSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
               + TL +++R  H      +       G+ +   + H    D+
Sbjct: 125 RHLNVKTLFALSRGLHREV--GMAQALALAGLPLDG-THHRGDDDA 167


>gi|332519119|ref|ZP_08395586.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4]
 gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4]
          Length = 953

 Score = 54.8 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 34/147 (23%)

Query: 4   KNKMRK--IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           KN M +  + FD ETTGL+     ++ I         +T + F +               
Sbjct: 374 KNLMNQTSVCFDTETTGLNPLTAELVGIAFSW-----ETGKGFYL--------------- 413

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
                  F +DK    +I      FF  +N + I  N K+D+  +      +        
Sbjct: 414 ------PFPEDKQEAQAIIEALRCFFEAENIQKIGQNLKYDIKVLAKYNVEVKGPLF--- 464

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY 148
              DT+      +P  R++++ L + Y
Sbjct: 465 ---DTMLAHYLINPDMRHNMDVLAETY 488


>gi|296158296|ref|ZP_06841128.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. Ch1-1]
 gi|295891632|gb|EFG71418.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. Ch1-1]
          Length = 207

 Score = 54.8 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 31/176 (17%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAV-------ELLDYSK--TNRTFQVFLCPNGRK 54
           ++ M  +  D+E TGL+  +DRIIEI  V        +++      +++ +         
Sbjct: 15  RSDMNLVWLDMEMTGLEPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETL-----AG 69

Query: 55  NSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFIN 107
                   H   G+ D       S +    +  DF +       +    ++   D  F+ 
Sbjct: 70  MDQWNQNTHGRSGLIDRVKASTVSEADATEQIRDFLSVYVPPGKSPMCGNSICQDRRFMA 129

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  + +     +  + TL    R+   +                 R+ H AL D
Sbjct: 130 RWMPDLERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 175


>gi|255728615|ref|XP_002549233.1| hypothetical protein CTRG_03530 [Candida tropicalis MYA-3404]
 gi|240133549|gb|EER33105.1| hypothetical protein CTRG_03530 [Candida tropicalis MYA-3404]
          Length = 288

 Score = 54.8 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 54/171 (31%), Gaps = 15/171 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + +  R I  D E  GL  +      +  + +++Y      F  F+ P G+        +
Sbjct: 118 KSDPGRYISLDCEFVGLGPEGSE-SAVARISIVNYFGVV-LFDSFVKPQGKVTD-FRTWV 174

Query: 63  HGITDEFLKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            GI    LKD   F     E   +    +    + H  K D+  +          P    
Sbjct: 175 SGIESFHLKDAIDFKK-AQEITGNLL--KGKILVGHAIKNDLDMLYLSH------PKSMI 225

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVY 171
           R        R         L  L K +  I I    KH ++ D+     ++
Sbjct: 226 RDTSKFKKFREIAGGKAPSLKKLAKEFLEIDI-QIGKHSSVEDARATMLLF 275


>gi|227872469|ref|ZP_03990809.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227841670|gb|EEJ51960.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 388

 Score = 54.8 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 51/155 (32%), Gaps = 30/155 (19%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +K   + FDIETTGL  K+ +I  IG +            Q+F        S E      
Sbjct: 22  DKEEILFFDIETTGLSPKSAQIYSIGLLLFKASEM--EIVQLFAN----SLSEEI----- 70

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-PLDPSR 122
                         +  EF ++   +  ++I+ N   FD  F+     +     P+    
Sbjct: 71  -------------EVLQEFQEYCKAK-TQFISFNGKAFDTPFLEKSYSQYGLKSPITGLP 116

Query: 123 IID---TLSIARRKHPSSRNDLNSLCKRYGITISH 154
            +D    +   R+ +      L    +  GI    
Sbjct: 117 QLDLFKMIQSRRKFYQLPSYKLKECERFLGIQRED 151


>gi|149179996|ref|ZP_01858501.1| exonuclease [Bacillus sp. SG-1]
 gi|148852188|gb|EDL66333.1| exonuclease [Bacillus sp. SG-1]
          Length = 307

 Score = 54.8 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 64/175 (36%), Gaps = 12/175 (6%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            I FD E      G+  +N   I +GAV+    +K+   F  ++ P      S    KL 
Sbjct: 7   FIFFDFEMKCDDRGMAYENMEAIRLGAVKYDLKTKSITQFDRYIQPATQEPLSDFCKKLT 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           GI D  L+    F  +F EF  +    + + + + +   D+  +  +        +    
Sbjct: 67  GINDRDLETADPFPLVFKEFLYWVGGVKKSRFFSWSKS-DMSRLKMDSALHGLPSVTIDK 125

Query: 120 -PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             SR +D      ++       + +    YG+       H  + D++    +++ 
Sbjct: 126 IQSRYVDFQQTFTQRVSKDNLSVENALALYGLHFEGE-PHNPMYDAYNTLQIFMH 179


>gi|161869352|ref|YP_001598519.1| oligoribonuclease [Neisseria meningitidis 053442]
 gi|161594905|gb|ABX72565.1| oligoribonuclease [Neisseria meningitidis 053442]
 gi|325135642|gb|EGC58259.1| oligoribonuclease [Neisseria meningitidis M0579]
          Length = 187

 Score = 54.8 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 31/178 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGR---KNS 56
           M  KN +     D+E TGL+ + DRIIE+  +            +V+ +  +        
Sbjct: 1   MQDKNNLCW--LDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMD 58

Query: 57  PEALKLHGIT--DEFLKD-KPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAE 109
                 HG T   + +++   + + +  +  DF +    E+      ++   D  F+   
Sbjct: 59  EWNTATHGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPERTTPMCGNSIHQDRRFMVKY 118

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           + ++       +  + T              L  L KR+   ++     R  H AL D
Sbjct: 119 MPKLENYFHYRNLDVST--------------LKELAKRWNPPVAKSVVKRGSHKALDD 162


>gi|145296472|ref|YP_001139293.1| oligoribonuclease [Corynebacterium glutamicum R]
 gi|166216072|sp|A4QGM5|ORN_CORGB RecName: Full=Oligoribonuclease
 gi|140846392|dbj|BAF55391.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 219

 Score = 54.8 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 27/175 (15%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCP---NGRKNSPEA 59
               R +  D+E TGLD K   I+E+ A V   + +       + +        +     
Sbjct: 14  ARDDRLVWVDLEMTGLDLKRHVIVEVAALVTDANLNVLGEGVDLVVHATEEELAQMDDFV 73

Query: 60  LKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQ 111
             +H   G+T++  +   +             +       A    ++   D  FI  ++ 
Sbjct: 74  TNMHESSGLTEQIRESAVTLKEAEDAVLALIEKHCDPAHPAPLAGNSIATDRAFIREQMP 133

Query: 112 RINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           R+  D     R++D  S+   ARR +P                      H AL D
Sbjct: 134 RL--DEALHYRMVDVSSVKELARRWYPRVYYK----------QPEKGLAHRALAD 176


>gi|118489625|gb|ABK96614.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 409

 Score = 54.8 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 54/182 (29%), Gaps = 15/182 (8%)

Query: 9   KIVFDIETTG---LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLH 63
            +V D E T     +     IIE    +      +    FQ ++ P   +  S     L 
Sbjct: 136 FVVIDFEATCDKERNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLT 195

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRIN--KD 116
           GI    +    + S        +   +         +   + +D   +     R    + 
Sbjct: 196 GIQQIQVDRGVTLSEALLRHDKWLENKGIKNTKFAVVTW-SNWDCRVMLESECRFKKIRK 254

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P   +R I+           +R  L    +  G+    R  H  L D+   + +   +M 
Sbjct: 255 PPYFNRWINLKVPFHEIFGGARC-LKEAVEMAGLHWQGR-AHCGLDDAKNTARLLALLMH 312

Query: 177 GG 178
            G
Sbjct: 313 RG 314


>gi|254823127|ref|ZP_05228128.1| oligoribonuclease [Mycobacterium intracellulare ATCC 13950]
          Length = 215

 Score = 54.8 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 27/173 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPE---ALK 61
           +   +  D E TGLD  +D++IEI A V   D +       V +  +    S       +
Sbjct: 2   RDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVIHADDAALSAMGDVVTE 61

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRI 113
           +H   G+ DE        ++  +   D+  +     + A    ++   D  FI  ++  +
Sbjct: 62  MHSRSGLIDEVRASAVDLATAEAMVLDYIGQHVKQPKTAPLAGNSIATDRAFIVRDMPAL 121

Query: 114 NKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             D     R+ID  SI    RR +P            +G   +    H AL D
Sbjct: 122 --DTYLHYRMIDVSSIKELCRRWYPR---------IYFGQP-TKGLAHRALAD 162


>gi|297199883|ref|ZP_06917280.1| oligoribonuclease [Streptomyces sviceus ATCC 29083]
 gi|197710348|gb|EDY54382.1| oligoribonuclease [Streptomyces sviceus ATCC 29083]
          Length = 200

 Score = 54.8 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 26/170 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEALK--- 61
           R +  D E TGL   +D +IE+ A V   + +       + + P  +     PE ++   
Sbjct: 4   RMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGDGVDIVIRPPDQALETMPEVVRQMH 63

Query: 62  -LHGITDEFLKD---KPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKD 116
            + G+ DE         +   + +   +   E   A    ++   D GF+  ++  +  +
Sbjct: 64  TVSGLLDELAGGTTLADAEEQVLAYVREHVKEPGKAPLCGNSVGTDRGFLLRDMPTL--E 121

Query: 117 PLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                RI+D  S+   ARR +P          + Y  +      H AL D
Sbjct: 122 DYLHYRIVDVSSVKELARRWYP----------RAYFNSPDKNGNHRALAD 161


>gi|151941228|gb|EDN59606.1| RNA exonuclease [Saccharomyces cerevisiae YJM789]
 gi|259148048|emb|CAY81297.1| Rex2p [Saccharomyces cerevisiae EC1118]
          Length = 269

 Score = 54.8 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 63/172 (36%), Gaps = 30/172 (17%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLC--PNGR-KNSPEAL 60
            D E TGLD  NDRIIEI  +    +         + +  ++  +   P    K +   +
Sbjct: 58  IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCI 117

Query: 61  KLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQR 112
           + H   G+T + L  + + + +  E  ++      ++       ++   D  F+  E  +
Sbjct: 118 EHHGNSGLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRLFMVREFPK 177

Query: 113 INKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +          + + + +ARR +P+ +                 + H A  D
Sbjct: 178 VIDHLFYRIVDVSSIMEVARRHNPALQAR----------NPKKEAAHTAYSD 219


>gi|149198195|ref|ZP_01875242.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
           araneosa HTCC2155]
 gi|149138797|gb|EDM27203.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
           araneosa HTCC2155]
          Length = 1036

 Score = 54.8 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 34/141 (24%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD ETTGLD ++  I+ +G           R    +  P       E          
Sbjct: 468 PVSFDTETTGLDVRSATIVGLGLA--------IRDHHAWYIPFNSDLDKE---------- 509

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                     I  E   FF + + ++ A NAKFD+  ++     +       +   DTL 
Sbjct: 510 ---------EILKEIKPFFADSSLKFFAQNAKFDLQMLHYAGIEVK------NIDFDTLV 554

Query: 129 IARRKHPSSR-NDLNSLCKRY 148
            +   +PS + +DL+SL   Y
Sbjct: 555 ASFICNPSRQFHDLDSLSLHY 575


>gi|118591295|ref|ZP_01548693.1| hypothetical protein SIAM614_26648 [Stappia aggregata IAM 12614]
 gi|118435967|gb|EAV42610.1| hypothetical protein SIAM614_26648 [Stappia aggregata IAM 12614]
          Length = 218

 Score = 54.8 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 17/170 (10%)

Query: 19  LDSKNDRIIEIGAVEL--LDYSKTNRTFQVFLCPNGR-----KNSPEALKLHGITDEFL- 70
           LD   + + +IGAV+L          TF V + P  R        P   +L GIT   + 
Sbjct: 26  LDPDPN-VAQIGAVKLSLQGGYDILDTFNVLIKPRDRFGAHPNVDPFFTELTGITQADID 84

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-----D 125
           ++  +       F DF   + A + +     ++  +          P  P+         
Sbjct: 85  REGIAHVDALERFADF--SEGANFWSWGKD-ELTLLAISSYIEGLTPPIPAHRFGNAIGL 141

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            L+         +     L + +G+      +H AL D+  ++     ++
Sbjct: 142 ILNAGIPLADMGQMTSGRLAEYFGLGTPDGRQHDALDDAMSVAVSLQHLL 191


>gi|88800886|ref|ZP_01116440.1| putative exodeoxyribonuclease i protein [Reinekea sp. MED297]
 gi|88776399|gb|EAR07620.1| putative exodeoxyribonuclease i protein [Reinekea sp. MED297]
          Length = 517

 Score = 54.8 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 25/178 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITD-EF 69
           D ET G     DRI +  AV   +D +       +F  P+      P A+++  ++  E 
Sbjct: 15  DYETWGTVPSRDRIAQFAAVRTDMDLNIIEEPINLFCKPDIDTVIDPGAVQITRLSPLEL 74

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
            +   S         +   + N     +N+ +FD       F    +    ++  + +  
Sbjct: 75  EQTGLSEWEFSQAVHNAMAQPNTCTTGYNSIRFDDECSRFLFYRNLINPYEREWKNGNSR 134

Query: 124 IDTL--------------SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            D L                 RR   S    L  L    G  +SH + H A+ D    
Sbjct: 135 WDLLDVVRMTHALRPDGIEWPRRDDGSPSFRLEHLTAANG--LSHANAHDAVSDVKAT 190


>gi|328877052|gb|EGG25415.1| putative RNase III [Dictyostelium fasciculatum]
          Length = 297

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 72/207 (34%), Gaps = 33/207 (15%)

Query: 2   IRKNKMRK-IVFDIETT---GLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-N 55
           I K   +  +V D E T   G   KN  +IE    +  ++  +    F  ++ P      
Sbjct: 56  IVKQPFKYIVVLDFEATCDDGTKIKNQEVIEFPSVIVDVEKQQVVAQFAEYVRPVYNPTL 115

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFF---------NEQN-----AEWIAHNAKF 101
           S    +L GI    +     F ++F   + F            +N     A        +
Sbjct: 116 SAFCTQLTGIQQATVDSADIFENVFKRHFKFLVDNKLLQENGARNEENPFAVLCC--GDW 173

Query: 102 DVGFINAELQRINKD----------PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT 151
           D+  +     RINK+          P   +  I+   I  + +  S   + ++ ++  I 
Sbjct: 174 DLLQMLPAQCRINKNESGELHYLPPPNYFTEWINVKKIFEKNYNMSAYGMANMLRQLSIP 233

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGG 178
           +  R  H  + D   +S + I M+  G
Sbjct: 234 LVGR-HHSGIDDCRNISSIVIAMLKKG 259


>gi|269955883|ref|YP_003325672.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304564|gb|ACZ30114.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 212

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP---EALKLH 63
           R +  D E TGLD++ D +IE+ AV    + +  +    V + P              +H
Sbjct: 9   RIVWIDCEMTGLDARADALIEVAAVVTDSELNVLDDGIDVLIAPPAAALEGMGDFVRTMH 68

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQRINK 115
              G+ DE      + +    +   +      +   A    ++   D  F++ ++  +  
Sbjct: 69  TTSGLLDELAAGA-TLAEAEQQVLAYIKRWVPDAGKAPLAGNSVGTDKMFLDRDMPELVG 127

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + ++  ++RR +P +             +      H AL D
Sbjct: 128 HLHYRIIDVSSVKELSRRWYPRAYFS----------SPKKDGGHRALAD 166


>gi|6323088|ref|NP_013160.1| Rex2p [Saccharomyces cerevisiae S288c]
 gi|1730818|sp|P54964|ORN_YEAST RecName: Full=Oligoribonuclease, mitochondrial; Flags: Precursor
 gi|1181280|emb|CAA64306.1| Ynt20 protein [Saccharomyces cerevisiae]
 gi|1360404|emb|CAA97590.1| YNT20 [Saccharomyces cerevisiae]
 gi|285813481|tpg|DAA09377.1| TPA: Rex2p [Saccharomyces cerevisiae S288c]
          Length = 269

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 63/172 (36%), Gaps = 30/172 (17%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLC--PNGR-KNSPEAL 60
            D E TGLD  NDRIIEI  +    +         + +  ++  +   P    K +   +
Sbjct: 58  IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCI 117

Query: 61  KLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQR 112
           + H   G+T + L  + + + +  E  ++      ++       ++   D  F+  E  +
Sbjct: 118 EHHGNSGLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRLFMVREFPK 177

Query: 113 INKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +          + + + +ARR +P+ +                 + H A  D
Sbjct: 178 VIDHLFYRIVDVSSIMEVARRHNPALQAR----------NPKKEAAHTAYSD 219


>gi|305680029|ref|ZP_07402839.1| DNA polymerase III, epsilon subunit [Corynebacterium matruchotii
           ATCC 14266]
 gi|305660649|gb|EFM50146.1| DNA polymerase III, epsilon subunit [Corynebacterium matruchotii
           ATCC 14266]
          Length = 407

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 34/178 (19%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           +   +   ++TTG+     +++ I AV L    + +  F   L      + P    +HG+
Sbjct: 51  RTPFVAVTVKTTGIHPSTAQLVVIDAVVLTASGEPDSDFHAVL---SVPDDPGPKHMHGL 107

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN------------------ 107
           + E + D  SFSSI        + +    I HN     GFI+                  
Sbjct: 108 SREEIADGKSFSSILKALGKTIDGR--TMITHNVPLVWGFIHKEARRAMTAAARANRRRG 165

Query: 108 -----AELQRINKDPLDPSRIIDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSK 157
                   QR+   P  P  I+D L+ ARR+    P +R    ++ +  G+     + 
Sbjct: 166 SRGKPRRRQRVGHVP-RPVGIVDMLATARRRGVDLPDTRIR--TVARMLGVECEPATA 220


>gi|304388401|ref|ZP_07370510.1| oligoribonuclease [Neisseria meningitidis ATCC 13091]
 gi|304337613|gb|EFM03773.1| oligoribonuclease [Neisseria meningitidis ATCC 13091]
          Length = 187

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 31/178 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGR---KNS 56
           M  KN +     D+E TGL+ + DRIIE+  +            +V+ +  +        
Sbjct: 1   MQDKNNLCW--LDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMD 58

Query: 57  PEALKLHGIT--DEFLKD-KPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAE 109
                 HG T   + +++   + + +  +  DF +    E+      ++   D  F+   
Sbjct: 59  EWNTATHGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPERATPMCGNSIHQDRRFMVKY 118

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           + ++       +  + T              L  L KR+   ++     R  H AL D
Sbjct: 119 MPKLENYFHYRNLDVST--------------LKELAKRWNPPVAKSVVKRGSHKALDD 162


>gi|297243822|ref|ZP_06927752.1| oligoribonuclease [Gardnerella vaginalis AMD]
 gi|296888243|gb|EFH26985.1| oligoribonuclease [Gardnerella vaginalis AMD]
          Length = 235

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 25/170 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN---SPEALKLH 63
           R I  D E TGLD  +D + E+  V    +    +    + + P+       +     +H
Sbjct: 16  RLIWIDCEMTGLDIFHDELCEVSVVPTDFNLKVLDDGIDLVIKPSDAAVAHMNDFVRNMH 75

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRINK 115
              G+ DE+ K+         +  ++          A    ++   D  F++  +  +  
Sbjct: 76  TSSGLVDEWNKNGLPLEEAQKQVVEYVKRFLPARGKAHLAGNSVGSDKKFLDRYMPDLMA 135

Query: 116 DPLDPSRIIDTL-SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163
           +       + TL  I+RR +P   RN             +    H AL D
Sbjct: 136 NLHYRVIDVSTLKEISRRLYPDVYRNK-----------PAKHGGHRALAD 174


>gi|254671000|emb|CBA07757.1| oligoribonuclease [Neisseria meningitidis alpha153]
          Length = 215

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 64/164 (39%), Gaps = 23/164 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGR---KNSPEALKLHGIT- 66
            D+E TGL+ + DRIIE+  +            +V+ +  +              HG T 
Sbjct: 38  LDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTATHGRTG 97

Query: 67  -DEFLKDK-PSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
             + +++   + + +  +  DF +E    +      ++   D  F+   + ++       
Sbjct: 98  LTQRVRESLHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLENYFHYR 157

Query: 121 SRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + TL  +A+R +PS       + K    ++  R  H AL D
Sbjct: 158 NLDVSTLKELAKRWNPS-------VAK----SVVKRGSHKALDD 190


>gi|289739411|gb|ADD18453.1| 3' histone exonuclease 1 [Glossina morsitans morsitans]
          Length = 226

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 61/182 (33%), Gaps = 30/182 (16%)

Query: 10  IVFDIETTGLDS------KNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           I  D E T  ++      +   IIE    +  L   K    F  ++ P    K S    K
Sbjct: 47  ICVDFEATCWENQAPPRWRESEIIEFPAVLVNLKTGKIEAEFHKYIMPIESPKLSAFCTK 106

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAHNAKFDV 103
           L GI  + + +     +    F ++  ++                  N  +++    +D 
Sbjct: 107 LTGIAQKTVDNGIPLQTALMMFQEWLRKELRARHLSLPKMTKDNKLGNCAFVSW-TDWDF 165

Query: 104 GFINA--ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           G        ++  K P   ++ ID  +I ++ +     +     +  G++   R  H  +
Sbjct: 166 GICLHKECSRKRLKKPPYFNQWIDLRAIYKKWYKYQPLNFADALRHVGLSFQGRE-HSGI 224

Query: 162 LD 163
            D
Sbjct: 225 DD 226


>gi|166998659|ref|NP_001107798.1| Snipper [Tribolium castaneum]
 gi|156447793|gb|ABU63675.1| Snipper [Tribolium castaneum]
          Length = 232

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 26/199 (13%)

Query: 10  IVFDIETTG---LDSKND--RIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKL 62
           +V D E T     D + +   IIE   V   +  +K    FQ ++ P    K S    +L
Sbjct: 32  LVLDFEATCWSNGDPRKNPAEIIEFPVVLYDVKNAKIIAEFQQYVMPVENPKLSDFCTEL 91

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--------------IAHNAKFDV---GF 105
            GI    + +     +    F  +  E+ + +               A     D      
Sbjct: 92  TGIQQHQVDNGVPLQACLLLFSRWVAEKMSLYDMDFPNGESQATKTCAFATWSDWDLGTC 151

Query: 106 INAELQRINKDPLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +  E  R N       R  ID  ++ +R        L       G+T    ++H  L D+
Sbjct: 152 LRKECIRKNIRIEKMYRKWIDIRALFKRYIRRPFIGLAGALAELGLTFEG-TEHCGLHDA 210

Query: 165 HLLSDVYIKMMVGGSQINF 183
              + +  KM+  G  +  
Sbjct: 211 RNTARLVGKMVDKGVVLQL 229


>gi|203284454|ref|YP_002222194.1| DNA polymerase I [Borrelia duttonii Ly]
 gi|201083897|gb|ACH93488.1| DNA polymerase I [Borrelia duttonii Ly]
          Length = 922

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 30/146 (20%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +  K   I  D ETT ++     II I            + F+ +          E  + 
Sbjct: 349 QLKKASYIAIDTETTSINVYESNIIGISVSF--------KEFESY------YIPIETKEK 394

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           + I  E+         I  +F + FN Q  + I  N KFD   +    +R   + +  S 
Sbjct: 395 NSIGKEY---------IIQKFNELFNSQP-KLIGQNYKFDYKVL----KRHGFNVI--SA 438

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
             DT+  A    P+++  L+ L  +Y
Sbjct: 439 YFDTMIAAYVIDPNTKVSLDFLAAKY 464


>gi|308389962|gb|ADO32282.1| putative oligoribonuclease [Neisseria meningitidis alpha710]
          Length = 215

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 29/167 (17%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGR---KNSPEALKLHGIT- 66
            D+E TGL+ + DRIIE+  +            +V+ +  +              HG T 
Sbjct: 38  LDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTATHGRTG 97

Query: 67  -DEFLKDK-PSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
             + +++   + + +  +  DF +E    +      ++   D  F+   + ++       
Sbjct: 98  LTQRVRESLHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLENYFHYR 157

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           +  + T              L  L KR+   ++     R  H AL D
Sbjct: 158 NLDVST--------------LKELAKRWNPPVAKSVVKRGSHKALDD 190


>gi|68479095|ref|XP_716353.1| hypothetical protein CaO19.12687 [Candida albicans SC5314]
 gi|68479220|ref|XP_716289.1| hypothetical protein CaO19.5220 [Candida albicans SC5314]
 gi|74679939|sp|Q5A3Q0|REXO4_CANAL RecName: Full=RNA exonuclease 4
 gi|46437955|gb|EAK97293.1| hypothetical protein CaO19.5220 [Candida albicans SC5314]
 gi|46438020|gb|EAK97357.1| hypothetical protein CaO19.12687 [Candida albicans SC5314]
 gi|238878362|gb|EEQ42000.1| RNA exonuclease 4 [Candida albicans WO-1]
          Length = 285

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 17/172 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + +  + +  D E  G+  K+     +  + +++Y         ++ P  R        +
Sbjct: 110 KLDPGKYVAIDCEFVGI-GKDGEESALARISIINYYGVV-LLDTYVRPQERVTDWR-TWV 166

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH--NAKFDVGFINAELQRINKDPLDP 120
            GI    ++D   F +   +  +  N  N   + H  N   D+ F++         P   
Sbjct: 167 SGIQSYHMQDAIDFKTAQLKTMELIN--NKILVGHAVNNDLDILFLSH--------PKSM 216

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS-HRSKHGALLDSHLLSDVY 171
            R        R         L  L K + I +     +H ++ D+     ++
Sbjct: 217 IRDTCKFPKFREIAGGKSPSLKKLIKHF-IQVDIQIGQHSSVEDARATMLLF 267


>gi|222083074|ref|YP_002542439.1| hypothetical protein Arad_9896 [Agrobacterium radiobacter K84]
 gi|221727753|gb|ACM30842.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 204

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 55/167 (32%), Gaps = 16/167 (9%)

Query: 26  IIEIGAVEL--LDYSKTNRTFQVFLCPNGR-----KNSPEALKLHGITDEFLK-DKPSFS 77
           I++IGAV+L          T++ ++ P  R        P   KL GIT+E ++ +  +  
Sbjct: 32  IVQIGAVKLGLESDFPILGTYKAYVQPIDRFGNRYALDPFFTKLTGITEEAIETEGVTLQ 91

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS 137
              S    F             K ++  +         D   P+R  D            
Sbjct: 92  DALSGIDSFSGGAGFWSWG---KDELNMVAISCYIAGVDAPIPARRFDNAVKLLLAAGMP 148

Query: 138 RNDL-----NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             DL     N L   Y +       H AL D+  +S     +M  G 
Sbjct: 149 IEDLAKTPSNKLADYYNVEHPPLQGHDALDDALSVSYTLQHLMKAGK 195


>gi|218767556|ref|YP_002342068.1| oligoribonuclease [Neisseria meningitidis Z2491]
 gi|11133783|sp|Q9JW09|ORN_NEIMA RecName: Full=Oligoribonuclease
 gi|121051564|emb|CAM07862.1| putative oligoribonuclease [Neisseria meningitidis Z2491]
 gi|319409820|emb|CBY90128.1| oligoribonuclease [Neisseria meningitidis WUE 2594]
          Length = 187

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 31/178 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGR---KNS 56
           M  KN +     D+E TGL+ + DRIIE+  +            +V+ +  +        
Sbjct: 1   MQDKNNLCW--LDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAIHQSDELLDNMD 58

Query: 57  PEALKLHGIT--DEFLKD-KPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAE 109
                 HG T   + +++   + + +  +  DF +E    +      ++   D  F+   
Sbjct: 59  EWNTATHGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPRRATPMCGNSIHQDRRFMVKY 118

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           + ++       +  + T              L  L KR+   ++     R  H AL D
Sbjct: 119 MPKLENYFHYRNLDVST--------------LKELAKRWNPPVAKSVVKRGSHKALDD 162


>gi|303256767|ref|ZP_07342781.1| exodeoxyribonuclease I [Burkholderiales bacterium 1_1_47]
 gi|330999116|ref|ZP_08322837.1| exonuclease [Parasutterella excrementihominis YIT 11859]
 gi|302860258|gb|EFL83335.1| exodeoxyribonuclease I [Burkholderiales bacterium 1_1_47]
 gi|329575505|gb|EGG57044.1| exonuclease [Parasutterella excrementihominis YIT 11859]
          Length = 494

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 64/189 (33%), Gaps = 23/189 (12%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC-PNGRKNSPEALKL 62
           N    + +D ET G +++ DR ++ G+     +++   ++  ++    +    SP +  +
Sbjct: 7   NSTSYLWYDYETFGTEARKDRPVQYGSFRTDTNFNIIGQSMVLYAQLADDYIPSPGSSLV 66

Query: 63  HGITDEFL---KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPL 118
            GIT   L   ++  + +       D   +     I +N + +D         R      
Sbjct: 67  TGITPMSLMDEENALAEADFAKVIRDEMGKPGTITIGYNNRNYDDEMTRFMFWRNLLPAY 126

Query: 119 DPSR-----IIDTLSIARRKHPSSRNDLN-------SLCKRYG-----ITISHRSKHGAL 161
           D          D   +    +  +   LN       ++C +         + HR  H A 
Sbjct: 127 DTEYGEGRGRFDVFLLVIAVYAVAPQILNWPTKEDGTVCFKLDRLTPANNLPHRHAHDAS 186

Query: 162 LDSHLLSDV 170
            D+     +
Sbjct: 187 SDAFATLQL 195


>gi|239941451|ref|ZP_04693388.1| oligoribonuclease [Streptomyces roseosporus NRRL 15998]
 gi|239987915|ref|ZP_04708579.1| oligoribonuclease [Streptomyces roseosporus NRRL 11379]
 gi|291444893|ref|ZP_06584283.1| oligoribonuclease [Streptomyces roseosporus NRRL 15998]
 gi|291347840|gb|EFE74744.1| oligoribonuclease [Streptomyces roseosporus NRRL 15998]
          Length = 201

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 26/170 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH 63
           R +  D E TGL   +D +IE+ A V   + +       + + P        PE + ++H
Sbjct: 4   RMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVRQMH 63

Query: 64  ---GITDEFLKD---KPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKD 116
              G+ DE         +   + S   +   E   A    ++   D GF+  +++ +  +
Sbjct: 64  TASGLLDELAGGTTLAEAEEQVLSYVREHVKEPGKAPLCGNSVGTDRGFLARDMRDL--E 121

Query: 117 PLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                RI+D  S+   ARR  P          + Y  +      H AL D
Sbjct: 122 SYLHYRIVDVSSVKELARRWFP----------RAYFNSPDKNGNHRALAD 161


>gi|226291198|gb|EEH46626.1| asparagine-rich protein [Paracoccidioides brasiliensis Pb18]
          Length = 621

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 88/262 (33%), Gaps = 51/262 (19%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R +V  + TT    G+    D   +IE+G +  +  +  + +R   V + P     +P  
Sbjct: 13  RYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDAENCKELHRE-SVLVKPVNTPITPLC 71

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
             L  +T E ++   +F    ++F  F  E     ++ N +F    +++   R+      
Sbjct: 72  TSLTTLTWEHVRSAGTFRDAINQFDAFAQEH---LLSKNFEFSFVTLDSWDMRVQLPREA 128

Query: 116 --------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGI-------TIS 153
                     L  SR  D  +  +R         P   +DL ++C    +        I 
Sbjct: 129 RDKAVVLPPYLQHSRTFDLRTEYQRWQQHHPESLPFGPSDLANICAALEVEPMQSSAPIK 188

Query: 154 HR-SKH----------GALLDSHLLSDVYIKMMVGGSQINFG--FKTNEDRFFKEEKKTV 200
           H    H           A+ ++  L+ V   ++      +      T       + +  +
Sbjct: 189 HNLPFHLQALAPASPRRAMEEAITLARVLHGLIRKSQPPHEHPEILTRPMDARADVRAFL 248

Query: 201 PNISLLKRDKPLFTRITKEELD 222
              S +     L    T+ EL+
Sbjct: 249 AERSKVLHMSGLPHDTTQSELE 270


>gi|295659917|ref|XP_002790516.1| asparagine-rich protein [Paracoccidioides brasiliensis Pb01]
 gi|226281693|gb|EEH37259.1| asparagine-rich protein [Paracoccidioides brasiliensis Pb01]
          Length = 621

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 88/262 (33%), Gaps = 51/262 (19%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R +V  + TT    G+    D   +IE+G +  +  +  + +R   V + P     +P  
Sbjct: 13  RYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDAENCKELHRE-SVLVKPVNTPITPLC 71

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
             L  +T E ++   +F    ++F  F  E     ++ N +F    +++   R+      
Sbjct: 72  TSLTTLTWEHVRSAGTFRDAINQFDAFAQEH---LLSKNFEFSFVTLDSWDMRVQLPREA 128

Query: 116 --------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGI-------TIS 153
                     L  SR  D  +  +R         P   +DL ++C    +        I 
Sbjct: 129 RDKAVVLPPYLQHSRTFDLRTEYQRWQQHHPESLPFGPSDLANICAALEVEPMQSSAPIK 188

Query: 154 HR-SKH----------GALLDSHLLSDVYIKMMVGGSQINFG--FKTNEDRFFKEEKKTV 200
           H    H           A+ ++  L+ V   ++      +      T       + +  +
Sbjct: 189 HNLPFHLQALAPASPRRAMEEAITLARVLHGLIRKSQPPHEHPEILTRPMDARADVRAFL 248

Query: 201 PNISLLKRDKPLFTRITKEELD 222
              S +     L    T+ EL+
Sbjct: 249 AERSKVLHMSGLPHDTTQSELE 270


>gi|325204819|gb|ADZ00273.1| oligoribonuclease [Neisseria meningitidis M01-240355]
          Length = 187

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 25/175 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGR---KNS 56
           M  KN +     D+E TGL+ + DRIIE+  +            +V+ +  +        
Sbjct: 1   MQDKNNLCW--LDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAIHQSDELLDNMD 58

Query: 57  PEALKLHGIT--DEFLKD-KPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAE 109
                 HG T   + +++   + + +  +  DF +E    +      ++   D  F+   
Sbjct: 59  EWNTATHGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKY 118

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + ++       +  + TL  +A+R +PS       + K    ++  R  H AL D
Sbjct: 119 MPKLENYFHYRNLDVSTLKELAKRWNPS-------VAK----SVVKRGSHKALDD 162


>gi|302551620|ref|ZP_07303962.1| oligoribonuclease [Streptomyces viridochromogenes DSM 40736]
 gi|302469238|gb|EFL32331.1| oligoribonuclease [Streptomyces viridochromogenes DSM 40736]
          Length = 200

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 30/172 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH 63
           R +  D E TGL   +D +IE+ A V   + +       + + P  R     PE + ++H
Sbjct: 4   RMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDRALETMPEVVRQMH 63

Query: 64  ---GITDEF-----LKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRIN 114
              G+  E      L+D      + +   +F  E   A    ++   D GF+  ++  + 
Sbjct: 64  TASGLLAELPDGTTLRDA--EEQVLTYVREFVKEPGKAPLCGNSVGTDRGFLLRDMPTL- 120

Query: 115 KDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +     RI+D  SI   ARR +P            +     + + H AL D
Sbjct: 121 -EDYLHYRIVDVSSIKELARRWYPR---------AYFNSPQKNGN-HRALAD 161


>gi|332526171|ref|ZP_08402306.1| exonuclease I [Rubrivivax benzoatilyticus JA2]
 gi|332110011|gb|EGJ10639.1| exonuclease I [Rubrivivax benzoatilyticus JA2]
          Length = 492

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 55/194 (28%), Gaps = 27/194 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE-F 69
           D ET G   + DR  +   +    + ++       F  P       PE+  L GI  +  
Sbjct: 23  DYETFGRVPRRDRPAQFAGIRTDAELNEIGAPAMWFCQPPTDTLPDPESCLLTGILPQQA 82

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
           L +  +     +             + +N+ +FD         R   DP           
Sbjct: 83  LAEGVAEREFAARIEAALAAPGTIGVGYNSIRFDDEVTRFLFWRNLIDPYAREWQNGCGR 142

Query: 124 ---IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
              +D +       P                L  L    G  ++H + H AL D      
Sbjct: 143 WDLLDVVRCCWALRPEGIEWPKHEDGRPSFKLEHLTAANG--LAHEAAHDALSDVRAT-- 198

Query: 170 VYIKMMVGGSQINF 183
           + +  ++   Q   
Sbjct: 199 IALARLIRQRQPRL 212


>gi|198414320|ref|XP_002130965.1| PREDICTED: similar to three prime histone mRNA exonuclease 1 [Ciona
           intestinalis]
          Length = 322

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 80/208 (38%), Gaps = 20/208 (9%)

Query: 10  IVFDIETTG--LDSKN--DRIIEIGAVELLDYSKTNRT--FQVFLCPNGRK-NSPEALKL 62
           +V D E T    + ++    IIE  AV L+D + T R   F  +  P      S     L
Sbjct: 91  VVLDYEATCEQQNPQDYLHEIIEFPAV-LIDTTSTERVDVFHSYCKPALNPQLSEFCTSL 149

Query: 63  HGITDEFLKDKPSFSSIFSEF------WDFFNEQNAEWIAHNAKFDVG-FINAELQRINK 115
            GI    +   P F+++F+ F       D F  +   ++  +  +D   F+N +      
Sbjct: 150 TGIQQSDVDSAPDFTTVFNNFETWMKKHDLFAPRKCAFVT-DGPWDFSRFLNIQCCLSEI 208

Query: 116 D-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             P    + I+   +    +   +  +  +    G+    R  H  + D+  LS +  +M
Sbjct: 209 KYPRWAKKWINLKKVYGNFYKLKKPKMMDMLSNIGLEFEGR-HHCGMDDATNLSRIVQRM 267

Query: 175 MVGGS--QINFGFKTNEDRFFKEEKKTV 200
           +  G+  Q N    + +     E++K +
Sbjct: 268 LDDGAIFQFNERLNSGKLEVISEKEKAL 295


>gi|119715587|ref|YP_922552.1| oligoribonuclease [Nocardioides sp. JS614]
 gi|119536248|gb|ABL80865.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
          Length = 222

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 42/178 (23%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D E TGLD + D +IE+ A V   D +       + + P                
Sbjct: 4   RLVWIDCEMTGLDLRADALIEVAALVTDFDLNVLGSGVDLIVKPPAEALDQM-------- 55

Query: 67  DEFLKDK-----------------PSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINA 108
           +EF++D                   +   + +   +F  +        +    D  F+  
Sbjct: 56  NEFVRDMHEKSGLLRELDSGISLDEAEEQVLAYVKEFCPDGSRPPLAGNTVATDRAFLAR 115

Query: 109 ELQRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++   N +     RI+D  SI   +RR +P          + Y    + R  H AL D
Sbjct: 116 DMP--NLETFLHYRIVDVSSIKELSRRWYP----------RAYFQAPAKRGNHRALAD 161


>gi|325193763|emb|CCA27985.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 442

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 9/164 (5%)

Query: 11  VFDIE--TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             D+E   TG+   +  +  I  V   +       +  ++ P  +       +L GI+ +
Sbjct: 225 AIDVECVATGVGHSDRDVARIAVVSEDETV----FYDQYVLPE-KPIVSYLTQLTGISPD 279

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L   PS  SI  +       +N   +  + K D+ ++  + ++  K   D + +     
Sbjct: 280 DLVGAPSLKSILIQLRTIL-PKNCVIVGQSIKKDLEWLGLDKEKDYKQSFDVADLFRIPM 338

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            ++      RN  L  + K    T    + H  ++D+     V+
Sbjct: 339 QSQNGTIRYRNFSLRHVAKYLLGTSIQEADHDPVIDAMYAMKVF 382


>gi|150025025|ref|YP_001295851.1| exonuclease [Flavobacterium psychrophilum JIP02/86]
 gi|149771566|emb|CAL43037.1| Probable exonuclease [Flavobacterium psychrophilum JIP02/86]
          Length = 188

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 25/153 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCP----NGRKNSPEALKL 62
           RK+   IETTG++   D+II IGA+ +       +   ++ L       G+  S + ++ 
Sbjct: 29  RKVALYIETTGINPAKDKIISIGAIAIEKNQIRIDNCLEIELNKAEILEGKDFSYQEIQ- 87

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                                 +F    NA  + H   +D+  IN  L ++    +  + 
Sbjct: 88  ----------------AIESLINFIG--NATLVGHRIHYDIQIINEYLHKLQSGRIKNNL 129

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISH 154
           +   +   R    +++   L  L   Y I   H
Sbjct: 130 LDVEVMHGRIIDQNAKQFSLTELLSIYKIDSPH 162


>gi|224824186|ref|ZP_03697294.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum
           2002]
 gi|224603605|gb|EEG09780.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum
           2002]
          Length = 181

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 66/183 (36%), Gaps = 41/183 (22%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +++   I  D+E TGL+  +DRIIEI  V                 P    + P+++ 
Sbjct: 1   MAQDQNNLIWLDMEMTGLNPDSDRIIEIAVVVTDGQLNVLAES-----PVLAIHQPDSV- 54

Query: 62  LHGITDE-----------------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
           L G+ +                   L +  +   + +   ++   + +    ++   D  
Sbjct: 55  LDGMDEWNKSTHARSGLIERVKASTLSETDAEEQMLAFLQEYVPAKTSPMCGNSICQDRR 114

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGA 160
           F+   + R+  +     R +D             + L  LCKR+   ++     + +H A
Sbjct: 115 FMARGMPRL--EAFFHYRNLDV------------STLKELCKRWKPEVARGVVKKGRHQA 160

Query: 161 LLD 163
           L D
Sbjct: 161 LAD 163


>gi|163759674|ref|ZP_02166759.1| hypothetical protein HPDFL43_09982 [Hoeflea phototrophica DFL-43]
 gi|162283271|gb|EDQ33557.1| hypothetical protein HPDFL43_09982 [Hoeflea phototrophica DFL-43]
          Length = 204

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 14/166 (8%)

Query: 26  IIEIGAVEL--LDYSKTNRTFQVFLCPNGR-----KNSPEALKLHGITDEFLKD-KPSFS 77
           I +IGAV L          +F V + P  R        P   +L GI ++ +KD   +  
Sbjct: 32  IAQIGAVRLGLEGDFPLTESFSVLVKPLDRHGRPYPIDPFFTRLTGINEDAIKDNGLALE 91

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI---IDTLSIARRKH 134
                F  F N           +F++  I+  +  I   P+  +R     D L  A   +
Sbjct: 92  EALGAFDRFTNGDRIFSWG-KDEFNLIAISTYVTGI-APPIPVTRFSNACDLLLAAGMPY 149

Query: 135 PSSRNDL-NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
              R    N+L   + +       H A  D+  ++     +   G 
Sbjct: 150 DDLRTTRSNTLPAYFEVDHPPLKAHDATDDARAVAYTLQHLFRLGR 195


>gi|310794355|gb|EFQ29816.1| hypothetical protein GLRG_04960 [Glomerella graminicola M1.001]
          Length = 618

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 87/267 (32%), Gaps = 51/267 (19%)

Query: 3   RKNKMRKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRK 54
           + N  R +V  + TT    G+    D   +IE+G +  +     +  R   V + P    
Sbjct: 9   QLNIDRYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDAKSLEEITRE-SVLVKPINTP 67

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            +P    L  +T E +++  +F    + F  F NE      + N  F    ++A   R+ 
Sbjct: 68  ITPLCTSLTTLTWEHVRNAGTFRDAINRFDTFANEH---LTSQNLDFVFVTLDAWDLRVQ 124

Query: 115 K------------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGI----- 150
                          L  SR  D  +  +R         P   + L+++C    +     
Sbjct: 125 LPREARDKAVVLPPYLQHSRTFDLRTEYQRWQQHHPESLPFGPSMLSNICAALEVEPVQS 184

Query: 151 --TISHR-SKH----------GALLDSHLLSDVYIKMMVGGSQINFG--FKTNEDRFFKE 195
              I H    H           A+ ++  L+ V   ++      +      T       +
Sbjct: 185 SAPIKHNLPFHLQALAPASPRRAMEEAVTLARVLRGLIRKSQPAHEHPDVLTRPMDARAD 244

Query: 196 EKKTVPNISLLKRDKPLFTRITKEELD 222
            +  +   S +     L    T+ EL+
Sbjct: 245 VRAFLSERSKVLHMSGLPHDTTQSELE 271


>gi|297194244|ref|ZP_06911642.1| oligoribonuclease [Streptomyces pristinaespiralis ATCC 25486]
 gi|197720537|gb|EDY64445.1| oligoribonuclease [Streptomyces pristinaespiralis ATCC 25486]
          Length = 200

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 65/171 (38%), Gaps = 28/171 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH 63
           R +  D E TGL   +D +IE+ A V   + +       + + P        PE + ++H
Sbjct: 4   RMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVRQMH 63

Query: 64  ---GITDEFLKD----KPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINK 115
              G+ D  L D      +   + S   +   E   A    ++   D GF+  ++  +  
Sbjct: 64  TTSGLLD-VLADGKTLADAEEQVLSYIREHVKEPGKAPLCGNSVGTDRGFLLRDMPTL-- 120

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +     RI+D  SI   ARR +P          + Y  +      H AL D
Sbjct: 121 EAFLHYRIVDVSSIKELARRWYP----------RAYFNSPEKSGNHRALAD 161


>gi|156537944|ref|XP_001608163.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 283

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 53/167 (31%), Gaps = 16/167 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIE-IGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + +  D E  G+    D ++  +  V    Y      +  ++ P  +        + GI 
Sbjct: 117 KVVAMDCEMVGIGDGTDSMVARVSIVNRHGYCV----YDKYVKPTEKVKDYR-TAVSGIQ 171

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              L+    F  +  E  +    +    + H    D+  +          P    R    
Sbjct: 172 PHHLETGQDFKVVQKEVAEILRGR--TLVGHALHNDLAVLFLSH------PKRFQRDTSR 223

Query: 127 LSIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYI 172
             + R+    +   L  L  +  G+ I   ++H ++ D+     +Y 
Sbjct: 224 YKVFRKVTKGNTPSLKKLASELLGLDI-QSAEHDSIEDARATMQLYQ 269


>gi|311977964|ref|YP_003987084.1| putative ATP-dependent DNA helicase [Acanthamoeba polyphaga
            mimivirus]
 gi|308204914|gb|ADO18715.1| putative ATP-dependent DNA helicase [Acanthamoeba polyphaga
            mimivirus]
          Length = 1031

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 64/200 (32%), Gaps = 46/200 (23%)

Query: 10   IVFDIETTGL----DSKND----------------------RIIEIGAVELLDYSKTNRT 43
            +V+D+ETTG                                 IIEI   +          
Sbjct: 841  LVYDLETTGAIENQGPFEHKPVIQRSQIYFRNNKYYAIIYPEIIEIAIKDYETGLII--- 897

Query: 44   FQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHN-AKF 101
                +  N    +     + GIT   L  + +   I  E  D          +AHN   F
Sbjct: 898  MNKLVKANST-LTLGIQNITGITPNMLVGQSTLDQIKVELEDKLKLFTACNMLAHNGNSF 956

Query: 102  DVGFINAELQRINKDPLDPSR--IIDTLSIARRKHPSSRNDLN--SL-CKRYGITISHRS 156
            D   +      +    L+P +   IDTLS+    H  S + L+  +L    Y +      
Sbjct: 957  DNKIM------LFYKLLNPQQVFFIDTLSVI-PVHMESNSKLDKKNLSAIYYQLFKEKFQ 1009

Query: 157  KHGALLDSHLLSDV--YIKM 174
             H A+ D   L  +  Y+K+
Sbjct: 1010 AHRAMNDVDALIKIMKYLKI 1029


>gi|25148196|ref|NP_741293.1| Enhanced RNAI (RNA interference) family member (eri-1)
           [Caenorhabditis elegans]
 gi|13775467|gb|AAK39278.1| Enhanced rnai (rna interference) protein 1, isoform a
           [Caenorhabditis elegans]
          Length = 448

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 74/212 (34%), Gaps = 25/212 (11%)

Query: 10  IVFDIETTGLDSKND---RIIEIGAVELLDYS-KTNRTFQVFLCPNGRK-NSPEALKLHG 64
           I  D E T ++   D    IIE+ AV +     K    F+ ++ P      S   ++   
Sbjct: 152 IAIDFECTCVEIIYDYPHEIIELPAVLIDVREMKIISEFRTYVRPVRNPKLSEFCMQFTK 211

Query: 65  ITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           I  E +   P F       + +       ++N+ + A               +     + 
Sbjct: 212 IAQETVDAAPYFREALQRLYTWMRKFNLGQKNSRF-AFVTDGPHDMWKFMQFQCLLSNIR 270

Query: 120 PSRIIDTLSIARRKHPSSRNDL---------NSLCKRYGITISHRSKHGALLDSHLLSDV 170
              +  +    ++      N L          ++ +R  ++    +KH  L D+  ++ +
Sbjct: 271 MPHMFRSFINIKKTFKEKFNGLIKGNGKSGIENMLERLDLSFVG-NKHSGLDDATNIAAI 329

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPN 202
            I+MM    ++    + N+   +KE +++   
Sbjct: 330 AIQMM----KLKIELRINQKCSYKENQRSAAR 357


>gi|59800509|ref|YP_207221.1| oligoribonuclease [Neisseria gonorrhoeae FA 1090]
 gi|194097641|ref|YP_002000679.1| oligoribonuclease [Neisseria gonorrhoeae NCCP11945]
 gi|239998172|ref|ZP_04718096.1| oligoribonuclease [Neisseria gonorrhoeae 35/02]
 gi|240013354|ref|ZP_04720267.1| oligoribonuclease [Neisseria gonorrhoeae DGI18]
 gi|240015799|ref|ZP_04722339.1| oligoribonuclease [Neisseria gonorrhoeae FA6140]
 gi|240079936|ref|ZP_04724479.1| oligoribonuclease [Neisseria gonorrhoeae FA19]
 gi|240112143|ref|ZP_04726633.1| oligoribonuclease [Neisseria gonorrhoeae MS11]
 gi|240114889|ref|ZP_04728951.1| oligoribonuclease [Neisseria gonorrhoeae PID18]
 gi|240117093|ref|ZP_04731155.1| oligoribonuclease [Neisseria gonorrhoeae PID1]
 gi|240120427|ref|ZP_04733389.1| oligoribonuclease [Neisseria gonorrhoeae PID24-1]
 gi|240122729|ref|ZP_04735685.1| oligoribonuclease [Neisseria gonorrhoeae PID332]
 gi|240124920|ref|ZP_04737806.1| oligoribonuclease [Neisseria gonorrhoeae SK-92-679]
 gi|240127431|ref|ZP_04740092.1| oligoribonuclease [Neisseria gonorrhoeae SK-93-1035]
 gi|254492949|ref|ZP_05106120.1| oligoribonuclease [Neisseria gonorrhoeae 1291]
 gi|260441295|ref|ZP_05795111.1| oligoribonuclease [Neisseria gonorrhoeae DGI2]
 gi|268594024|ref|ZP_06128191.1| oligoribonuclease [Neisseria gonorrhoeae 35/02]
 gi|268596076|ref|ZP_06130243.1| oligoribonuclease [Neisseria gonorrhoeae FA19]
 gi|268598201|ref|ZP_06132368.1| oligoribonuclease [Neisseria gonorrhoeae MS11]
 gi|268600546|ref|ZP_06134713.1| oligoribonuclease [Neisseria gonorrhoeae PID18]
 gi|268602779|ref|ZP_06136946.1| oligoribonuclease [Neisseria gonorrhoeae PID1]
 gi|268681328|ref|ZP_06148190.1| oligoribonuclease [Neisseria gonorrhoeae PID332]
 gi|268683499|ref|ZP_06150361.1| oligoribonuclease [Neisseria gonorrhoeae SK-92-679]
 gi|268685805|ref|ZP_06152667.1| oligoribonuclease [Neisseria gonorrhoeae SK-93-1035]
 gi|291044651|ref|ZP_06570360.1| oligoribonuclease [Neisseria gonorrhoeae DGI2]
 gi|293397760|ref|ZP_06641966.1| oligoribonuclease [Neisseria gonorrhoeae F62]
 gi|81311266|sp|Q5FAH8|ORN_NEIG1 RecName: Full=Oligoribonuclease
 gi|59717404|gb|AAW88809.1| putative oligo ribonuclease [Neisseria gonorrhoeae FA 1090]
 gi|193932931|gb|ACF28755.1| oligoribonuclease [Neisseria gonorrhoeae NCCP11945]
 gi|226511989|gb|EEH61334.1| oligoribonuclease [Neisseria gonorrhoeae 1291]
 gi|268547413|gb|EEZ42831.1| oligoribonuclease [Neisseria gonorrhoeae 35/02]
 gi|268549864|gb|EEZ44883.1| oligoribonuclease [Neisseria gonorrhoeae FA19]
 gi|268582332|gb|EEZ47008.1| oligoribonuclease [Neisseria gonorrhoeae MS11]
 gi|268584677|gb|EEZ49353.1| oligoribonuclease [Neisseria gonorrhoeae PID18]
 gi|268586910|gb|EEZ51586.1| oligoribonuclease [Neisseria gonorrhoeae PID1]
 gi|268621612|gb|EEZ54012.1| oligoribonuclease [Neisseria gonorrhoeae PID332]
 gi|268623783|gb|EEZ56183.1| oligoribonuclease [Neisseria gonorrhoeae SK-92-679]
 gi|268626089|gb|EEZ58489.1| oligoribonuclease [Neisseria gonorrhoeae SK-93-1035]
 gi|291011545|gb|EFE03541.1| oligoribonuclease [Neisseria gonorrhoeae DGI2]
 gi|291611706|gb|EFF40775.1| oligoribonuclease [Neisseria gonorrhoeae F62]
 gi|317163462|gb|ADV07003.1| oligoribonuclease [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 187

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 31/178 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG----RKNS 56
           M  KN +     D+E TGL+ + DRIIE+  +            +V+             
Sbjct: 1   MQDKNNLCW--LDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAIHQSDDLLDNMD 58

Query: 57  PEALKLHGIT--DEFLKD-KPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAE 109
                 HG T   + +++   + + +  +  DF +E    +      ++   D  F+   
Sbjct: 59  EWNTATHGRTGLTQRVRESSHTEAEVEQKLLDFMSEWIPGRATPMCGNSIHQDRRFMVKY 118

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           + ++       +  + T              L  L KR+   I+     R  H AL D
Sbjct: 119 MPKLENYFHYRNLDVST--------------LKELAKRWNPPIAKSVVKRGSHKALDD 162


>gi|268552995|ref|XP_002634480.1| Hypothetical protein CBG10739 [Caenorhabditis briggsae]
 gi|187030858|emb|CAP30059.1| hypothetical protein CBG_10739 [Caenorhabditis briggsae AF16]
          Length = 279

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 10  IVFDIETT------GLDSKNDRIIEIGAVE--LLDYSKTNRTFQVFLCP-NGRKNSPEAL 60
           ++ D E T      G       IIE   V+    D+S+  R F  ++ P    K S    
Sbjct: 68  LILDFEATCQENSLGPMLPVQEIIEFPVVQLSTSDWSEI-RRFHQYVRPTECPKLSSFCT 126

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINAELQRINKD 116
            L GI  E + DKP+ S++   F ++   +++       A     D     A        
Sbjct: 127 TLTGIIQEMVDDKPTISNVLENFDEWMK-EDSRLEKGNFAFVTCGDWDLKVALTNEAKFK 185

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNS----LCKRYGITISHRSKHG 159
            L            ++ + +  N        L K Y   + H+ +H 
Sbjct: 186 NLKIPEYFTQWINVKKAYAAHTNHFAKGMTQLLKIY--DLQHKGRHH 230


>gi|72162668|ref|YP_290325.1| oligoribonuclease [Thermobifida fusca YX]
 gi|71916400|gb|AAZ56302.1| exonuclease [Thermobifida fusca YX]
          Length = 213

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 28/167 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS---PEALKLH---G 64
            D E TGLD K D +IE+   +   + ++ +    V + P             ++H   G
Sbjct: 8   IDCEMTGLDLKKDALIEVACLITDGELNQLDEGINVVIKPPQEALDQMGEFVTQMHTTSG 67

Query: 65  ITDEFLKDKPSFSS----IFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +  E L++  + +     +      +  E +      ++   D  F+  ++ R+  D   
Sbjct: 68  LLAE-LENGVTLAEAEQLVLDHIRRYIPEPKKVPLCGNSIATDRAFLARDMPRV--DEHL 124

Query: 120 PSRIIDTLSIA---RRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             R++D  S+    RR +P          + Y  +      H AL D
Sbjct: 125 HYRMVDVSSVKELLRRWYP----------RVYFASPEKHGGHRALAD 161


>gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A]
 gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A]
          Length = 955

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 27/140 (19%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I +D ETTGL+ +  +++ I      +           +                    
Sbjct: 366 PIAWDTETTGLNPQTAKLVGISCCWGEE-----------VNNIAYIPIEHKEG------- 407

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              ++ S   +  +       +    +  NAKFD   +  +  ++N          DT+ 
Sbjct: 408 ---EQLSKEKVLEKLRPILENKCYPKVFQNAKFDRLVLLNQGIQLNGVVF------DTML 458

Query: 129 IARRKHPSSRNDLNSLCKRY 148
            +   +P   + L+SLCK+Y
Sbjct: 459 ASYVINPDKSHKLSSLCKQY 478


>gi|126326996|ref|XP_001381185.1| PREDICTED: similar to CGI-114 protein [Monodelphis domestica]
          Length = 333

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEAL---KL 62
            R +  D+E TGLD + D+IIE+   +   D +       + +          +    + 
Sbjct: 137 QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIINQPDELLDSMSEWCKEH 196

Query: 63  H---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
           H   G+T    +   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 197 HGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQFMK 256

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P          + Y       + H AL D
Sbjct: 257 HLHYRIIDVSTVKELCRRWYP----------EEYEFVPKKAASHRALDD 295


>gi|157120016|ref|XP_001653489.1| oligoribonuclease, mitochondrial [Aedes aegypti]
 gi|108875103|gb|EAT39328.1| oligoribonuclease, mitochondrial [Aedes aegypti]
          Length = 210

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 44/182 (24%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL-- 62
           ++   +  D+E TGL+ + DRI+EI  V      +          P+   + PE  ++  
Sbjct: 32  SQHNLVWIDLEMTGLEVEKDRILEIACVITNKNLEILER-----GPDIVIHEPE--EVLN 84

Query: 63  ------------HGITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFI 106
                        G+     + K           DF      E+      +    D  F+
Sbjct: 85  AMNEWCQTNHSKTGLIQAVRESKIDLQKAEQMVLDFVKKYCPEKACPLAGNTIYMDRMFL 144

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSK----HGAL 161
              + ++N+        + T+                LCKR+ G   S+       H AL
Sbjct: 145 YRYMPQLNEYLHYRIIDVSTVKE--------------LCKRWNGAVFSNCPPKKLVHRAL 190

Query: 162 LD 163
            D
Sbjct: 191 DD 192


>gi|195342143|ref|XP_002037661.1| GM18382 [Drosophila sechellia]
 gi|194132511|gb|EDW54079.1| GM18382 [Drosophila sechellia]
          Length = 353

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 26/146 (17%)

Query: 9   KIVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQV------------------- 46
             V D+ETT L +  +    I E+          T +  +                    
Sbjct: 20  FAVLDLETTNLPAYRNNRVSITELCIYAFEAALLTKKKEEQNQDDQQELPAAPRVLHKLN 79

Query: 47  FLCPNGRKNSPEALKLHGITDEFLKDKPSFS-SIFSEFWDFFNEQNAE--WIAHN-AKFD 102
            L        PEA ++ G+++  L+ +             F     +    +AHN   FD
Sbjct: 80  LLFQPSMVVDPEAERITGLSNYLLERESQLDTDAAQLIVSFLKHLPSPVCLVAHNGWGFD 139

Query: 103 VGFINAELQRINKDPLDPSRIIDTLS 128
              +    +++N +       +D+L 
Sbjct: 140 FPILRQAFEKLNIELPQSLTCVDSLR 165


>gi|261202824|ref|XP_002628626.1| RNA binding protein [Ajellomyces dermatitidis SLH14081]
 gi|239590723|gb|EEQ73304.1| RNA binding protein [Ajellomyces dermatitidis SLH14081]
 gi|239612439|gb|EEQ89426.1| RNA binding protein [Ajellomyces dermatitidis ER-3]
 gi|327355244|gb|EGE84101.1| asparagine-rich protein [Ajellomyces dermatitidis ATCC 18188]
          Length = 619

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 88/262 (33%), Gaps = 51/262 (19%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R +V  + TT    G+    D   +IE+G +  +  +  + +R   V + P     +P  
Sbjct: 13  RYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDSENCKELHRE-SVLVKPVNTPITPLC 71

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
             L  +T E ++   +F    ++F  F  E     ++ N +F    +++   R+      
Sbjct: 72  TSLTTLTWEHVRSAGTFRDAINQFDAFAQEH---LLSKNLEFSFVTLDSWDMRVQLPREA 128

Query: 116 --------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGI-------TIS 153
                     L  SR  D  +  +R         P   +DL ++C    +        I 
Sbjct: 129 RDKAVVLPPYLQHSRTFDLRTEYQRWQQHHPESLPFGPSDLANICAALEVEPMQSSAPIK 188

Query: 154 HR-SKH----------GALLDSHLLSDVYIKMMVGGSQINFG--FKTNEDRFFKEEKKTV 200
           H    H           A+ ++  L+ V   ++      +      T       + +  +
Sbjct: 189 HNLPFHLQALAPASPRRAMEEAITLARVLHGLIRKSQPAHEHPEILTRPMDARADVRAFL 248

Query: 201 PNISLLKRDKPLFTRITKEELD 222
              S +     L    T+ EL+
Sbjct: 249 AERSKVLHMSGLPHDTTQSELE 270


>gi|256271847|gb|EEU06877.1| Rex2p [Saccharomyces cerevisiae JAY291]
          Length = 269

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 63/172 (36%), Gaps = 30/172 (17%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLC--PNGR-KNSPEAL 60
            D E TGLD  NDRIIEI  +    +         + +  ++  +   P    K +   +
Sbjct: 58  IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCI 117

Query: 61  KLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQR 112
           + H   G+T + L  + + + +  E  ++      ++       ++   D  F+  E  +
Sbjct: 118 EHHGNSGLTAKVLASEKTLAQVEDELLEYIQRYIPDKNIGVLAGNSVHMDRLFMVREFPK 177

Query: 113 INKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +          + + + +ARR +P+ +                 + H A  D
Sbjct: 178 VIDHLFYRIVDVSSIMEVARRHNPALQAR----------NPKKEAAHTAYSD 219


>gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae]
          Length = 920

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 34/146 (23%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           N  + +  D ETTGLD+  D II I  A++  +          +L  +GR          
Sbjct: 347 NSKKLVCIDFETTGLDTFKDTIIGISFAIKSNEA--------FYLDLSGR---------T 389

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I       K       +  +D   +++ + I HN K++   + A  + I       +  
Sbjct: 390 KI------GKDKC---MNLVFDTLEKEDIKVIGHNLKYEYKMMKAIGKSIG------NMY 434

Query: 124 IDTLSIARRKHP-SSRNDLNSLCKRY 148
            DT+  A   +P   R +++ L   Y
Sbjct: 435 FDTMVAAYLINPTRGRYNMDDLAIAY 460


>gi|322693950|gb|EFY85794.1| RNA exonuclease 4 [Metarhizium acridum CQMa 102]
          Length = 319

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 53/171 (30%), Gaps = 21/171 (12%)

Query: 8   RKIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + +  D E  G+        +  I  V+          +  ++ P  R        + G+
Sbjct: 133 KYVGLDCEMVGVGQGGHESALARISLVDFHGRQI----YDSYVKPKERVTDWR-TAVSGV 187

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +   ++    F  +  E ++    +    + H+   D+  +             P  I D
Sbjct: 188 SQREMRFAREFEEVQREVYNII--EGRILVGHDINHDLDALKLSH--------PPRDIRD 237

Query: 126 TLSIA--RRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIK 173
           T      ++     +  L  L +    I I     H +  D+ +   ++ K
Sbjct: 238 TAKHHAFKKYGHGRKPSLRVLARELLAIEI-QEGPHSSTEDARVTMLIFRK 287


>gi|269795775|ref|YP_003315230.1| 5' exoribonuclease [Sanguibacter keddieii DSM 10542]
 gi|269097960|gb|ACZ22396.1| oligoribonuclease (3'->5' exoribonuclease) [Sanguibacter keddieii
           DSM 10542]
          Length = 220

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 27/178 (15%)

Query: 1   MIRKNK-MRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP- 57
           M   +K  R +  D E TGLD   D ++E+ AV    + +       + + P        
Sbjct: 1   MASTSKNDRIVWIDCEMTGLDLGADALVEVAAVVTDSELTVLGEGIDIIVRPPDEALEQM 60

Query: 58  --EALKLH---GITDEFLKD---KPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINA 108
                 +H   G+ DE         + + +      F  E   A    ++   D  F+  
Sbjct: 61  NDFVRDMHTSSGLIDELAAGTTLADAEAQVLDYLRTFVPEPGKAPLGGNSVATDKMFLER 120

Query: 109 ELQRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +++ +        RIID  SI   ARR +P          + Y  + +    H AL D
Sbjct: 121 DMKDL--VAHLHYRIIDVSSIKELARRWYP----------RVYFASPTKNGGHRALAD 166


>gi|312090123|ref|XP_003146498.1| exonuclease [Loa loa]
 gi|307758337|gb|EFO17571.1| exonuclease [Loa loa]
          Length = 192

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 8/119 (6%)

Query: 3   RKNKMRKIVFDIETT---GLDSKND-RIIEIGAVE--LLDYSKTNRTFQVFLCPNGRKN- 55
           ++N    +V D E T   G+       IIE   ++    +  + +R F  ++ P  R   
Sbjct: 56  KQNFDYFLVLDFEATCEEGIKIMPHQEIIEFPVIQLSGKNLEEISR-FHRYVKPTERPIL 114

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           +    +L GI  E +  + S   +   F  +    N     H+ K    FI      + 
Sbjct: 115 TSFCTELTGIVQETVASQESLPEVLDAFDKWLINSNLINADHSMKSHFTFITCGDWDLG 173


>gi|308492914|ref|XP_003108647.1| hypothetical protein CRE_11149 [Caenorhabditis remanei]
 gi|308248387|gb|EFO92339.1| hypothetical protein CRE_11149 [Caenorhabditis remanei]
          Length = 280

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 20/171 (11%)

Query: 10  IVFDIETTGLDSKND------RIIEIGAVE--LLDYSKTNRTFQVFLCP-NGRKNSPEAL 60
           ++ D E T  ++          IIE   V+    D+ +  R F  ++ P    K +    
Sbjct: 67  LILDFEATCQENSKGPILPVQEIIEFPVVQLSTSDWKEI-RRFHQYVRPTESPKLTSFCT 125

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF----DVGFINAELQRINKD 116
            L GI  E + +KP+ S +  EF  +   +++    +N  F    D     A        
Sbjct: 126 SLTGIIQEMVDEKPTLSGVLEEFDKWLK-EDSRLENNNFAFVTCGDWDLKVALPNEAKFK 184

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNS----LCKRYGITISHRSKHGALLD 163
            +            ++ +    ND       L K Y +    R  H  + D
Sbjct: 185 NIPIPDYFHQWINVKKAYAEHTNDFARGMMQLLKIYKLQHQGR-HHSGIDD 234


>gi|213965916|ref|ZP_03394107.1| oligoribonuclease [Corynebacterium amycolatum SK46]
 gi|213951494|gb|EEB62885.1| oligoribonuclease [Corynebacterium amycolatum SK46]
          Length = 217

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 27/171 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCP---NGRKNSPEALKLH 63
           R +  D E TGL+ +   I+EI A V   + +       + +        +      K+H
Sbjct: 16  RIVWIDCEMTGLEPERHVIVEIAALVTDANLNVLGEGVDIVVHASETELAQMDDFVTKMH 75

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINK 115
              G+  E    K + +       D+  +     + A    ++   D  FI+  +  +++
Sbjct: 76  AKSGLDQEIRASKTNVADAEQAVLDYIRQWVPEPRTAPLAGNSIASDRKFIHRYMPELDQ 135

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 R++D  S    ARR +P          +           H AL D
Sbjct: 136 HL--HYRMVDVSSFKELARRWYP----------QVLKGAPEKGLAHRALAD 174


>gi|168702958|ref|ZP_02735235.1| DNA polymerase I (PolI) [Gemmata obscuriglobus UQM 2246]
          Length = 203

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 51/150 (34%)

Query: 9   KIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            +  D ETTGLD   DR+  I++ A +                 +       A       
Sbjct: 50  PVAVDTETTGLDPARDRVRLIQVAAGQ-----------------DVALIDVFAFA----- 87

Query: 67  DEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            + + D +P F+++  +          E + HN +FD+ F+             P ++ D
Sbjct: 88  -DPVADLRPLFAALADK----------EQVGHNLQFDLRFLAPF-------EFVPGKVFD 129

Query: 126 TLSIARRKHPSS--------RNDLNSLCKR 147
           T+  +R +H           R+ L     R
Sbjct: 130 TILASRVRHAGDRAESNGRFRHGLGDAAAR 159


>gi|121634222|ref|YP_974467.1| oligoribonuclease [Neisseria meningitidis FAM18]
 gi|166216273|sp|A1KS35|ORN_NEIMF RecName: Full=Oligoribonuclease
 gi|120865928|emb|CAM09665.1| putative oligoribonuclease [Neisseria meningitidis FAM18]
 gi|261393203|emb|CAX50822.1| oligoribonuclease [Neisseria meningitidis 8013]
 gi|325131506|gb|EGC54213.1| oligoribonuclease [Neisseria meningitidis M6190]
 gi|325137552|gb|EGC60134.1| oligoribonuclease [Neisseria meningitidis ES14902]
 gi|325141599|gb|EGC64064.1| oligoribonuclease [Neisseria meningitidis 961-5945]
 gi|325197638|gb|ADY93094.1| oligoribonuclease [Neisseria meningitidis G2136]
          Length = 187

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 25/175 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGR---KNS 56
           M  KN +     D+E TGL+ + DRIIE+  +            +V+ +  +        
Sbjct: 1   MQDKNNLCW--LDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMD 58

Query: 57  PEALKLHGIT--DEFLKDK-PSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAE 109
                 HG T   + +++   + + +  +  DF +E    +      ++   D  F+   
Sbjct: 59  EWNTATHGRTGLTQRVRESLHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKY 118

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + ++       +  + TL  +A+R +PS       + K    ++  R  H AL D
Sbjct: 119 MPKLENYFHYRNLDVSTLKELAKRWNPS-------VAK----SVVKRGSHKALDD 162


>gi|288959067|ref|YP_003449408.1| DNA polymerase III, epsilon subunit [Azospirillum sp. B510]
 gi|288911375|dbj|BAI72864.1| DNA polymerase III, epsilon subunit [Azospirillum sp. B510]
          Length = 463

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 62/174 (35%), Gaps = 21/174 (12%)

Query: 16  TTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLHGITDEFLKDKP 74
           T G +  +  +I +G + L+  ++  RT  +  L        PEA   HGI    +  + 
Sbjct: 274 TAGTEPDSGPVIAVGTLRLV-GARIFRTVSLALLIDPIDPVPPEATARHGIGTAMVAGER 332

Query: 75  SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH 134
            F++++    D  +   A  +       +  +     +      D    +D  ++A    
Sbjct: 333 PFAAVWPAIRDALHNCIAVGVG--IDAALAALARSAAQAGIADPDLPSGLDLGALAGALD 390

Query: 135 PSSRNDL-----NSLCKRYGITISHRSKHG-----ALLDSHLLSDVYIKMMVGG 178
           P+    L       L + +G+    R +H      AL  + L   +  ++   G
Sbjct: 391 PA----LAGAPPERLAESFGLP---RHRHTGPQGQALAQAELAVALLSRLTARG 437


>gi|254804313|ref|YP_003082534.1| oligoribonuclease [Neisseria meningitidis alpha14]
 gi|254667855|emb|CBA03898.1| oligoribonuclease [Neisseria meningitidis alpha14]
          Length = 215

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 68/174 (39%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGR---KNSP 57
           I ++K      D+E TGL+ + +RIIE+  +            +V+ +  +         
Sbjct: 28  IMQDKNNLCWLDMEMTGLNPETNRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDE 87

Query: 58  EALKLHGIT--DEFLKD-KPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAEL 110
                HG T   + +++   + + +  +  DF +E    +      ++   D  F+   +
Sbjct: 88  WNTATHGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYM 147

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++       +  + TL  +A+R +PS       + K    ++  R  H AL D
Sbjct: 148 PKLENYFHYRNLDVSTLKELAKRWNPS-------VAK----SVVKRGSHKALDD 190


>gi|238063163|ref|ZP_04607872.1| oligoribonuclease [Micromonospora sp. ATCC 39149]
 gi|237884974|gb|EEP73802.1| oligoribonuclease [Micromonospora sp. ATCC 39149]
          Length = 198

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 27/167 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS--PEALK-LH---G 64
            D E TGLD   D +IE+ A+    D +       V +  +       PE ++ +H   G
Sbjct: 10  IDCEMTGLDLGRDALIEVAALVTDPDLNVLGDGVDVVIHADEAALEAMPEIVRTMHGKSG 69

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +T+E  +   + +       D+      + + A    ++   D GFI+ ++ R+  D   
Sbjct: 70  LTEEVRRSAVTLAEAEDLVLDYVTSHVKDPRAAPLCGNSIATDRGFISRDMPRL--DAHL 127

Query: 120 PSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             R+ID  SI    RR +P            +G        H AL D
Sbjct: 128 HYRMIDVSSIKELCRRWYPRV---------YFGQPRKGL-AHRALAD 164


>gi|167626987|ref|YP_001677487.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596988|gb|ABZ86986.1| oligoribonuclease (3'->5' exoribonuclease) [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 178

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 63/174 (36%), Gaps = 27/174 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----SPE 58
            ++    +  D+E TGLD  N RIIEI A+            +        +     +  
Sbjct: 1   MQSTDNLVWIDLEMTGLDVDNCRIIEIAAIITDKNLNIIAEAEPIAIHQSDEILNSMNEW 60

Query: 59  ALKLHGIT--DEFLKD-KPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQ 111
            +K+HG T   + +KD K S      +   F  E    Q++    ++   D  F+   + 
Sbjct: 61  CIKVHGETGLTQRVKDSKTSLKQAEQKILVFIKEYVPYQSSPLCGNSIWQDRRFLAKYMP 120

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY--GITISHRSKHGALLD 163
            I  D     R++D               L  L + +  G +   +S H AL D
Sbjct: 121 DI--DDYCHYRMLDV------------TSLKLLNEYWGDGESFYKKSTHKALDD 160


>gi|164686250|ref|ZP_02210280.1| hypothetical protein CLOBAR_02688 [Clostridium bartlettii DSM
          16795]
 gi|164601852|gb|EDQ95317.1| hypothetical protein CLOBAR_02688 [Clostridium bartlettii DSM
          16795]
          Length = 344

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 7  MRKIVFDIETTGLDSKNDR------IIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEA 59
          M+KI  D E    ++KN R      +I IGA++    +K    F+  + P   K   P  
Sbjct: 1  MKKIYMDFEMNMNNTKNKREGFKADLIAIGAIKYDTKTKKIEKFKSLIKPILTKTVYPHI 60

Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNE 89
           +L  IT E L++ P++ S+   F  +  +
Sbjct: 61 EELTHITTEDLENAPTYESVMRSFKHWLGD 90


>gi|25148199|ref|NP_741292.1| Enhanced RNAI (RNA interference) family member (eri-1)
           [Caenorhabditis elegans]
 gi|45476772|sp|O44406|ERI1_CAEEL RecName: Full=3'-5' exonuclease eri-1; AltName: Full=Enhanced RNAi
           protein
 gi|18030164|gb|AAK39277.2| Enhanced rnai (rna interference) protein 1, isoform b
           [Caenorhabditis elegans]
          Length = 582

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 74/212 (34%), Gaps = 25/212 (11%)

Query: 10  IVFDIETTGLDSKND---RIIEIGAVELLDYS-KTNRTFQVFLCPNGRK-NSPEALKLHG 64
           I  D E T ++   D    IIE+ AV +     K    F+ ++ P      S   ++   
Sbjct: 152 IAIDFECTCVEIIYDYPHEIIELPAVLIDVREMKIISEFRTYVRPVRNPKLSEFCMQFTK 211

Query: 65  ITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           I  E +   P F       + +       ++N+ + A               +     + 
Sbjct: 212 IAQETVDAAPYFREALQRLYTWMRKFNLGQKNSRF-AFVTDGPHDMWKFMQFQCLLSNIR 270

Query: 120 PSRIIDTLSIARRKHPSSRNDL---------NSLCKRYGITISHRSKHGALLDSHLLSDV 170
              +  +    ++      N L          ++ +R  ++    +KH  L D+  ++ +
Sbjct: 271 MPHMFRSFINIKKTFKEKFNGLIKGNGKSGIENMLERLDLSFVG-NKHSGLDDATNIAAI 329

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPN 202
            I+MM    ++    + N+   +KE +++   
Sbjct: 330 AIQMM----KLKIELRINQKCSYKENQRSAAR 357


>gi|302537758|ref|ZP_07290100.1| exonuclease [Streptomyces sp. C]
 gi|302446653|gb|EFL18469.1| exonuclease [Streptomyces sp. C]
          Length = 200

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 68/189 (35%), Gaps = 24/189 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA-VELLDYSKT-------NRTFQVFLCPNGRKNSPEAL 60
            I  DIE  G       +I  GA V                 TF   L P   +    AL
Sbjct: 11  YISVDIEADGPIPGPYSMISFGAAVAGRQDGAVYTAADPERHTFYRELRPISDRYVDAAL 70

Query: 61  KLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNA----EWIAHNAKFDVGFINAELQRINK 115
            + G+  E  L++    ++  +EF  +  E +A        + A FD  F+   L     
Sbjct: 71  AVSGLDRERLLREGSDPAAAMAEFRTWVREVSAGAQPVMCGYPASFDWTFLYWYLIEFGD 130

Query: 116 D-PLDPSRIID--TLSIARRKHPSSRNDLNSLCK-RY--GITISHRSKHGALLDSHLLSD 169
           D P   S  +D  TL  A+ + P     L +  K R    +    R  H AL D+   ++
Sbjct: 131 DSPFGHSGCLDMKTLYAAKARVP-----LRAAVKGRMPRELRSRRRHTHHALDDAVEQAE 185

Query: 170 VYIKMMVGG 178
           +   +M+  
Sbjct: 186 LMSNLMLWQ 194


>gi|330983635|gb|EGH81738.1| hypothetical protein PLA107_01295 [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 177

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 9/177 (5%)

Query: 2   IRKNKMRKIVFDIETTGLDSKN--DRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE 58
           +  +  +   FD+E    +       II  G  EL L   K  R    ++ P     S  
Sbjct: 1   MSADHSKITCFDLEMCCWEDTRQIGEIISFGLCELDLKTGKITREAHHYVKPVTDTVSEF 60

Query: 59  ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KD 116
             +L GIT   + +     S + +     F  +           D  ++    +R N   
Sbjct: 61  CTQLTGITQRTVNRQGRPLSEVVNSITAKFGTKRPYVC---WGEDGDYLARMARRQNFFI 117

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           P         L   R++H      L        +     + H AL DS  ++ +  K
Sbjct: 118 PNMVFLNAALLYQLRKRHVGESIGLKRAMASEDLEFEG-NAHNALNDSRNMARLIAK 173


>gi|291234393|ref|XP_002737131.1| PREDICTED: Three prime repair exonuclease 2-like [Saccoglossus
           kowalevskii]
          Length = 598

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 76/240 (31%), Gaps = 41/240 (17%)

Query: 9   KIVFDIETTGL---DSKNDRIIEIG-------AVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            +  D+ETT L   +    +I EI        A+      +      + + P  +   P 
Sbjct: 155 FVFMDLETTTLIQYNKPLPKITEIALVAVSREALMTEGDIRIVDKLVMCVDPLDQ-IVPI 213

Query: 59  ALKLHGITDE--FLKDKPSFSS-IFSEFWDFFNEQNAEW--IAHNAK-FDVGFINAELQR 112
           A ++ G+++E   L +K +F   +      FF  Q      IAHN   FD   +  EL R
Sbjct: 214 ASQMTGLSNESLQLHNKQTFDVNVMVALRQFFKRQIPPICMIAHNGNKFDFPILRDELLR 273

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRND-----------------LNSLCKRYGITISHR 155
           +           DTL                              L SL ++Y +     
Sbjct: 274 VRGQLDILCG--DTLQAFIEIRDEEERTAFSNYYSSPMRQKGDLTLKSLHQKY-LGSQFL 330

Query: 156 SKHGALLDSHLLSDVYIK----MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
           S H A  D+  L  +  K    ++    +    F T             P  + +K   P
Sbjct: 331 SAHCAESDAIALMKIVQKQHHTLLRWFDRNAVPFITTTSVPHPMPSPLTPPRTPVKNTGP 390


>gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49]
 gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49]
          Length = 949

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 34/147 (23%)

Query: 4   KNKMRK--IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +N M++  + FD ETTGL+     ++ I                 ++             
Sbjct: 370 QNLMKQPSVCFDTETTGLNPLTAELVGIAFSWEAGKG-------FYI------------- 409

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
                  F K+K +   I      FF     E I  N K+D+  +         D +   
Sbjct: 410 ------AFPKEKEAAQEIIELLRPFFEATEIEKIGQNLKYDLKVLR------KYDIVVKG 457

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY 148
           ++ DT+      +P  R++++ L + Y
Sbjct: 458 QLFDTMLAHYLINPDMRHNMDILAETY 484


>gi|71407241|ref|XP_806103.1| exonuclease [Trypanosoma cruzi strain CL Brener]
 gi|70869745|gb|EAN84252.1| exonuclease, putative [Trypanosoma cruzi]
          Length = 289

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 63/224 (28%), Gaps = 51/224 (22%)

Query: 10  IVFDIETTGLDSKND---RIIEIGAVELLDYS-KTNRTFQVFLCPNGRK-NSPEALKLHG 64
           +V D E T   +       IIE   V +     +    F  ++ P      +     L G
Sbjct: 6   LVCDFEATCDSASVAYPLEIIEFPVVCVDTAELRVVAEFHSYVRPTKNPRLTSFCTALTG 65

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI---------------------------AH 97
           IT   +   P    +   F  +  E                                  H
Sbjct: 66  ITQAQVDAAPRLPEVLRHFDLWLREVVYPLCRRWRKEHLEGLNKCLKASQKRRFVYDETH 125

Query: 98  NA---------------KFDVG-FINAELQRINKDPLDP--SRIIDTLSIARRKHPSSRN 139
           N                 +D+  F+       +     P   R ++              
Sbjct: 126 NPGWIDCERMICMVTDGPWDMRKFMYECSVVRDGHLFPPLFYRWVNVRHSFAEHFRMRPR 185

Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            LN + ++ G++  H   H  + DS  ++ + I+++  G +++ 
Sbjct: 186 KLNDMLRKLGLSF-HGHPHSGIDDSRNIARIVIELLKRGYRVHH 228


>gi|290975477|ref|XP_002670469.1| exonuclease family protein [Naegleria gruberi]
 gi|284084028|gb|EFC37725.1| exonuclease family protein [Naegleria gruberi]
          Length = 729

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 26/174 (14%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K   +  D E   L  K D   E+  V  +D   T   +   + P+ +      +   GI
Sbjct: 385 KYTLLALDCEMC-LTKKGD---ELTRVTFVDEQGTV-VYDKLVKPHEQIIDYRTM-FSGI 438

Query: 66  TDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           T E L++ +     +  E  +F + ++   + H+ + D+  +    +R+          I
Sbjct: 439 TKEMLENVETRLEDVHKEVQEFIS-EDTILVGHSLENDLICLKIAHKRV----------I 487

Query: 125 DTLS---IARRKHPSSRNDLNSLCKRY---GITIS--HRSKHGALLDSHLLSDV 170
           DT      A       +  L  L ++Y    I ++   +  H +  D+    D+
Sbjct: 488 DTAVIFINASTLGTKYKQSLKHLTRKYLSREIQVNSIDKIGHDSSEDATAALDL 541


>gi|257438116|ref|ZP_05613871.1| exonuclease KapD [Faecalibacterium prausnitzii A2-165]
 gi|257199447|gb|EEU97731.1| exonuclease KapD [Faecalibacterium prausnitzii A2-165]
          Length = 183

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 3/114 (2%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFS 81
              IIEIGAV++ + +    TF + L P   R       K+ G+T   L           
Sbjct: 31  RGEIIEIGAVKIDEDANVLDTFSIHLRPRIFRTLQHHIAKVTGLTQADLDRGEPIVQGLR 90

Query: 82  EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHP 135
            F  +    +AE+       DV  +   L   N D   P++  D   I  R+ P
Sbjct: 91  RFMQWCGP-DAEFAEWGMD-DVPVLKQNLFLCNLDESRPTQWYDLQQIFLREPP 142


>gi|156395505|ref|XP_001637151.1| predicted protein [Nematostella vectensis]
 gi|156224261|gb|EDO45088.1| predicted protein [Nematostella vectensis]
          Length = 151

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 20/113 (17%)

Query: 9   KIVFDIETTGLD---SKNDRIIEIGAVELLDYS--KTNRTFQVFLCPNGRK-NSPEALKL 62
            +V D E T  D    K   IIE   V  ++    +T   F  ++CP      +     L
Sbjct: 15  YLVLDFEATCDDKNKPKPQEIIEFP-VTKVNSRTLQTEAEFHQYVCPTAHPKLTTFCTDL 73

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQ------------NAEWIA-HNAKFD 102
            GIT + ++ KP   +    + D   +Q              E +  H++  D
Sbjct: 74  TGITQDMVEGKPDLQTTLQVYSDVMGKQSKIGMPGMLHGLGLELVGRHHSGID 126


>gi|315502266|ref|YP_004081153.1| exonuclease rnase t and DNA polymerase iii [Micromonospora sp. L5]
 gi|315408885|gb|ADU07002.1| Exonuclease RNase T and DNA polymerase III [Micromonospora sp. L5]
          Length = 196

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 27/167 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS--PEALK-LH---G 64
            D E TGLD + D +IE+ A+    D +       V +  +       PE ++ +H   G
Sbjct: 8   IDCEMTGLDLRRDALIEVAALVTDPDLNVLGDGVDVVIHADDEALDGMPEIVRTMHAKSG 67

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +T+E  +   + +       D+      + + A    ++   D GF+  ++ R+  D   
Sbjct: 68  LTEEVRRSTVTLAEAEDMVLDYVTSYVKDPRTAPLCGNSIATDRGFLARDMTRL--DAHL 125

Query: 120 PSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             R+ID  SI    RR +P            +G        H AL D
Sbjct: 126 HYRMIDVSSIKELCRRWYPRV---------YFGQP-QKGLAHRALAD 162


>gi|195378554|ref|XP_002048048.1| GJ13749 [Drosophila virilis]
 gi|194155206|gb|EDW70390.1| GJ13749 [Drosophila virilis]
          Length = 275

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 54/174 (31%), Gaps = 14/174 (8%)

Query: 3   RKNKMRKIVFDIETTG--LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +  + R +  D E  G   + ++D +  +  V  +     ++     + P     +    
Sbjct: 99  KAQRNRILAMDCEMVGVGFNGQDDMLARVSIVNKVGEVLLDK----HVKP-REPVTDYRT 153

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            + GI    +++   F  +  E            + H  + D+  ++ +           
Sbjct: 154 SISGIRPHDIENAEEFKDVQDEVVKLL--HGKILVGHALRNDLAVLSIKHPVAQIRDTSR 211

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            + +  L          R  L  L    G  I     H ++ D+     +Y ++
Sbjct: 212 YKPLCKLVSNGHTPSLKRLTLAVL----GQEIQTGE-HNSVEDARAAMGIYNRI 260


>gi|255324289|ref|ZP_05365410.1| oligoribonuclease [Corynebacterium tuberculostearicum SK141]
 gi|255298619|gb|EET77915.1| oligoribonuclease [Corynebacterium tuberculostearicum SK141]
          Length = 215

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 53/169 (31%), Gaps = 23/169 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLC---PNGRKNSPEALKLH 63
           R +  D+E TGLD +   I+E+ AV              + +        +      ++H
Sbjct: 15  RLVWIDLEMTGLDPERHVIVEVAAVITDGNLNILGEGIDLVVHATEDELAQMDSFVTQMH 74

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINK 115
              G+  E  +   S            NE       A    ++   D  FI   + R++ 
Sbjct: 75  AKSGLDKEIRESTTSIGEAEDAVLALINEHCDPEHPAPLAGNSIATDRTFIRTYMPRLDS 134

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  +ARR HP            +         H AL D
Sbjct: 135 ALHYRMIDVSTIKELARRWHPR---------AYFNQP-DKGMAHRALQD 173


>gi|189206309|ref|XP_001939489.1| RNA exonuclease 4 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187975582|gb|EDU42208.1| RNA exonuclease 4 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 358

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 57/168 (33%), Gaps = 12/168 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGIT 66
           + +  D E  G+  + +R   +  V L+++   ++ +  ++  P   + +     + GI 
Sbjct: 150 KYVALDCEMVGIGPEPNRDSALARVSLVNFHG-HQIYDSYVQVPRQVQVTDYRTAVSGIE 208

Query: 67  DEFLKD--KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
              L+      F  + ++            + H  K D+  +  +  +            
Sbjct: 209 PRHLRKDVARPFDEVRNDIK--ILLTGRILVGHAVKNDLDVLILKHDKRFIRDTSKFSKF 266

Query: 125 DTLSIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVY 171
             L+      P     L  L ++  G+ I     H ++ D+     ++
Sbjct: 267 RALAT----IPGRTPGLKLLAEKLLGVEI-QVGAHSSVEDARATMALF 309


>gi|326504778|dbj|BAK06680.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 343

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 64/219 (29%), Gaps = 32/219 (14%)

Query: 25  RIIEIGAVELLDY--SKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFS 81
            IIE  AV L+D         F+ ++ P      +    +L GI  E +           
Sbjct: 38  EIIEFPAV-LVDGATGCIESAFRRYVRPKHHPVLTQFCRELTGIRQEDVDGGVDLGEALW 96

Query: 82  EFWDFFNEQNAEWIAHNAK-----------FDVGFINAELQRINKDPLDPSRIIDTLSIA 130
               +     A   A N +           +D   +     R     ++     D     
Sbjct: 97  LHDAWLKAATAG--AGNRRSGRLAVVTWGDWDCRTMLEFECRFKG--IEKPSYFDQWINL 152

Query: 131 RRKHP-----SSRNDLNSLCKRYGITISHRSKH----GALLDSHLLSDVY---IKMMVGG 178
           R           R +L    +  G+    R  H     AL  + LL+++    +KM + G
Sbjct: 153 RVPFQVALGGGGRVNLQEAVRAAGLDWEGR-LHCGLDDALNTARLLAEIMRRGVKMTITG 211

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
           S         E +         P ++    ++    R +
Sbjct: 212 SLAPLPLFEQEQQPRTSTCGGSPALAPPPFEQKQQPRTS 250


>gi|300780020|ref|ZP_07089876.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC
           33030]
 gi|300534130|gb|EFK55189.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC
           33030]
          Length = 341

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 88/280 (31%), Gaps = 62/280 (22%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             +   +   ++TT +     R++ + AV   D       F       G    P  + +H
Sbjct: 14  AEQFPYVALYVQTTNIHPSTGRLVTLDAVAFDDSGVVGEEFHRIFNVGG---DPGPMHMH 70

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI----------------- 106
           G+     +    FS        F + +    + H+A    GFI                 
Sbjct: 71  GVEPNLFERAAKFSRHLKALDKFLDAR--TLVVHDAPMTWGFIVSEARRAMNAAARANRS 128

Query: 107 -----NAELQRINKDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKH-- 158
                    QR+   P  P  I+DTL+ AR++  +     L S+    GI          
Sbjct: 129 RNRRQGRRRQRVGHVPA-PEGIVDTLATARKQGVTLIDVRLESVASASGIDAPAPDASPQ 187

Query: 159 GALLDSH-----------LLSDVYIKMMVGGSQIN----------FGFKTNEDRFFKEEK 197
            A   +            +L  +++K +  G  ++          FG + +  R   E+K
Sbjct: 188 RA---ARPEEETSRERTLVLVSLFLKQLENGEVLSRTPDELAPDRFGLQRSRIRVEAEKK 244

Query: 198 KTVPNIS------LLKRDKPLFTRITKEELDEHDKTIQTL 231
           +               R       +T +   +HD+ +Q +
Sbjct: 245 QPKQGNPGQFTDKSGLRPGMEVV-VTDDIQADHDEVVQKI 283


>gi|323353934|gb|EGA85787.1| Rex2p [Saccharomyces cerevisiae VL3]
          Length = 229

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 63/172 (36%), Gaps = 30/172 (17%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLC--PNGR-KNSPEAL 60
            D E TGLD  NDRIIEI  +    +         + +  ++  +   P    K +   +
Sbjct: 18  IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMBKMNEWCI 77

Query: 61  KLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQR 112
           + H   G+T + L  + + + +  E  ++      ++       ++   D  F+  E  +
Sbjct: 78  EHHGNSGLTAKVLASEKTLAQVEDELLEYIQXYIPDKNVGVLAGNSVHMDRLFMVREFPK 137

Query: 113 INKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +          + + + +ARR +P+ +                 + H A  D
Sbjct: 138 VIDHLFYRIVDVSSIMEVARRHNPALQAR----------NPKKEAAHTAYSD 179


>gi|213021987|ref|ZP_03336434.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 97

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%)

Query: 150 ITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
           I  S R+ HGALLD+ +L++VY+ M  G + + F  +    R   E           +  
Sbjct: 1   IDNSKRTLHGALLDAQILAEVYLAMTGGQTSMTFAMEGETQRQQGEATIQRIVRQASRLR 60

Query: 210 KPLFTRIT 217
             L  R +
Sbjct: 61  VVLPLRKS 68


>gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
 gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 879

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 31/155 (20%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +K   I FD ETTGLD+K  +I+        +        + F  P          ++ 
Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMNEN--------EAFYVPLTHNYLGVGEQI- 363

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                    K +  +IF+ F           I HN K+D   I       N D   P + 
Sbjct: 364 ----SLQSAKKAIEAIFNHF----------VIGHNLKYDFKIIQN-----NFDLNLPQKY 404

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            DT+ +A  K+PS R +++ L  R     ++ + H
Sbjct: 405 ADTMILAWLKNPSLRVNMDDLALRL---FNYETLH 436


>gi|323308092|gb|EGA61345.1| Rex2p [Saccharomyces cerevisiae FostersO]
          Length = 229

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 63/172 (36%), Gaps = 30/172 (17%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLC--PNGR-KNSPEAL 60
            D E TGLD  NDRIIEI  +    +         + +  ++  +   P    K +   +
Sbjct: 18  IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCI 77

Query: 61  KLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQR 112
           + H   G+T + L  + + + +  E  ++      ++       ++   D  F+  E  +
Sbjct: 78  EHHGNSGLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRLFMVREFPK 137

Query: 113 INKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +          + + + +ARR +P+ +                 + H A  D
Sbjct: 138 VIDHLFYRIVDVSSIMEVARRHNPALQAR----------NPKKEAAHTAYSD 179


>gi|319938044|ref|ZP_08012444.1| hypothetical protein HMPREF9488_03280 [Coprobacillus sp. 29_1]
 gi|319806950|gb|EFW03589.1| hypothetical protein HMPREF9488_03280 [Coprobacillus sp. 29_1]
          Length = 190

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 70/189 (37%), Gaps = 23/189 (12%)

Query: 9   KIVFDIETTGLDSKND--RIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALK 61
            IV D+E      + +   I E+ A ++      +       F+  + P+   ++   L 
Sbjct: 9   YIVIDLE---FSKERNKTEIFELAAKKIYTTRYGERIIEGDKFRRIIKPHNIPSN-SILS 64

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKD-PL 118
           L G++ + +    +FS +F EF  + ++ N E  +++   + D   +    +    +   
Sbjct: 65  LTGVSRDEILSSINFSEVFKEFLKWIHKDNLETLYVSWGPR-DSAVLRVNCKDNGFEKEF 123

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLC----KRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +    ID    +      +   L SL     K +G        H A  D++  + +  K 
Sbjct: 124 NEMTFID--LQSYIMEQENFQQLPSLMQIVEKEFG-EFKGTEHH-ASYDAYNTALLMKKK 179

Query: 175 MVGGSQINF 183
           +   + I  
Sbjct: 180 LENLNGIEH 188


>gi|325276506|ref|ZP_08142262.1| exonuclease I [Pseudomonas sp. TJI-51]
 gi|324098353|gb|EGB96443.1| exonuclease I [Pseudomonas sp. TJI-51]
          Length = 105

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ + DR +++  +    D ++ +    ++  P       P A  + GIT + L
Sbjct: 9   DYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPADDILPHPAACLVTGITPQLL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFD 102
            ++        +       +       +N  +FD
Sbjct: 69  AEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFD 102


>gi|158320848|ref|YP_001513355.1| exonuclease-like protein [Alkaliphilus oremlandii OhILAs]
 gi|158141047|gb|ABW19359.1| exonuclease-like protein [Alkaliphilus oremlandii OhILAs]
          Length = 345

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 49/143 (34%), Gaps = 31/143 (21%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N     + DIET GL  +   ++ IG +   +     + F                    
Sbjct: 23  NSGDYCIIDIETMGLSRQYHEVVLIGVLFNKNNQIVIKQFF------------------- 63

Query: 65  ITDEFLKDKPSFSS-IFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-LDPS 121
                  +KP     I  EF     +  +  I +N A FD+ F+    +  N +   D  
Sbjct: 64  ------AEKPKEEILILKEFAA-LYQSFSYVITYNGAAFDIPFLKHRFKYHNLEWHFDDL 116

Query: 122 RIIDTLSIARRKHPSSRNDLNSL 144
             ID L   R+   + ++ L +L
Sbjct: 117 THIDVLQCLRK--DTLKSQLENL 137


>gi|168028955|ref|XP_001766992.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681734|gb|EDQ68158.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 325

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 54/167 (32%), Gaps = 14/167 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E  G  S     I I A   L     N     ++ P     +    ++ GI    
Sbjct: 121 VALDCEMVGGGSDGS--INICARVCLVDEDENVLLNTYVQP-LLPVTDYRYEITGIKPSD 177

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
               PSF  +         E     I H+ + D+  +     R++  P     I DT + 
Sbjct: 178 FNGAPSFKRV-RYIVKRILEDGPLLIGHDLRHDLACL-----RLDHSP---ELIRDTATY 228

Query: 130 ARRKHPSS-RNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKM 174
                 S   + L  L + + G  I   + H    D+     +Y +M
Sbjct: 229 QLFVKTSGVSHKLRFLTEVFLGYKIQDGTIHDPCEDAIAAMRLYKRM 275


>gi|157817035|ref|NP_001101957.1| apoptosis-enhancing nuclease [Rattus norvegicus]
 gi|215275192|sp|B2GUW6|AEN_RAT RecName: Full=Apoptosis-enhancing nuclease; AltName:
           Full=Interferon-stimulated 20 kDa exonuclease-like 1
 gi|149057237|gb|EDM08560.1| interferon stimulated exonuclease gene 20-like 1 (predicted),
           isoform CRA_a [Rattus norvegicus]
 gi|149057239|gb|EDM08562.1| interferon stimulated exonuclease gene 20-like 1 (predicted),
           isoform CRA_a [Rattus norvegicus]
 gi|183985831|gb|AAI66435.1| Aen protein [Rattus norvegicus]
          Length = 332

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 56/180 (31%), Gaps = 20/180 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   +  R+ E+    ++ YS  +  +  ++ P          +  GIT 
Sbjct: 104 KYVAIDCEMVGTGPQG-RVSELARCSVVSYSG-DVLYDKYIRPE-MPIVDYRTRWSGITR 160

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +     F     E       +    + H        ++ + Q +            T 
Sbjct: 161 QHMHKAIPFQVAQKEILKLL--KGKVVVGH-------ALHNDFQALKYVHPGSQIRDTTY 211

Query: 128 SIARRKHPSS----RNDLNSLC---KRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                  PSS    R  L  L        I + H   H ++ D+    ++Y  + V   Q
Sbjct: 212 VPNLLSQPSSLTRARVSLKDLALNLLHKKIQVGHHG-HSSVEDAMTAMELYQLVEVQWEQ 270


>gi|170781928|ref|YP_001710260.1| oligoribonuclease [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156496|emb|CAQ01646.1| oligoribonuclease [Clavibacter michiganensis subsp. sepedonicus]
          Length = 206

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 58/174 (33%), Gaps = 22/174 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNG---RKNSP 57
           +  N  R +  D E TGLD   D ++E+  V    D    +  F + + P+         
Sbjct: 1   MGNNADRLVWIDCEMTGLDLAIDELVEVAVVVTDFDLVPVDAGFTIVINPDPAALANMGE 60

Query: 58  EALKLH---GITDE---FLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAEL 110
              ++H   G+ DE    +    +  ++             A    +    D  F+   +
Sbjct: 61  FVTEMHRSSGLLDEIPAGVSLADAEFAVLEYLLQHVPNGGKAPIAGNTIGTDRAFLAKYM 120

Query: 111 QRINKDPLDPSRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R++      S  + ++ + A+   P          + Y  +      H AL D
Sbjct: 121 PRVDAHLHYRSVDVSSIKVLAKEWFP----------RIYFNSPEKNGGHRALAD 164


>gi|158336625|ref|YP_001517799.1| hypothetical protein AM1_3493 [Acaryochloris marina MBIC11017]
 gi|158306866|gb|ABW28483.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 172

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M  ++ D+E+ G    +  ++  GAV +      ++TF   L P   +  PEAL + G +
Sbjct: 1   MSFVMVDVESDGPIPGDYSMVCFGAVIVEP--TLSKTFYGQLKPISEQWVPEALAVSGFS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFF--NEQNAEWIAH-NAKFDVGFINAELQR-INKDPLDPSR 122
            + +      + +   F D+   N +   +    N  FD  FIN      +  +P     
Sbjct: 59  RDDVLGFEEPAMVMQAFADWITENSKGRPFFISDNNGFDWQFINWYFHHFLGNNPFGY-- 116

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
              T S     +       ++      +  +  + H  + D+   ++  + M   G +I+
Sbjct: 117 ---TSSNLGSLYKGL--VKDTFTNFKHLRKTAHTHHP-VDDARGNAEALLLMKEQGLKIS 170

Query: 183 F 183
            
Sbjct: 171 L 171


>gi|326499798|dbj|BAJ90734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 343

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 64/219 (29%), Gaps = 32/219 (14%)

Query: 25  RIIEIGAVELLDY--SKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFS 81
            IIE  AV L+D         F+ ++ P      +    +L GI  E L           
Sbjct: 38  EIIEFPAV-LVDGATGCIESAFRRYVRPKHHPVLTQFCRELTGIRQEDLDGGVDLGEALW 96

Query: 82  EFWDFFNEQNAEWIAHNAK-----------FDVGFINAELQRINKDPLDPSRIIDTLSIA 130
               +     A   A N +           +D   +     R     ++     D     
Sbjct: 97  LHDAWLKAATAG--AGNRRSGRLAVVTWGDWDCRTMLEFECRFKG--IEKPSYFDQWINL 152

Query: 131 RRKHP-----SSRNDLNSLCKRYGITISHRSKH----GALLDSHLLSDVY---IKMMVGG 178
           R           R +L    +  G+    R  H     AL  + LL+++    +KM + G
Sbjct: 153 RVPFQVALGGGGRVNLQEAVRAAGLDWEGR-LHCGLDDALNTARLLAEIMRRGVKMTITG 211

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
           S         E +         P ++    ++    R +
Sbjct: 212 SLAPLPLFEQEQQPRTSTCGGSPALAPPPFEQKQQPRTS 250


>gi|239941908|ref|ZP_04693845.1| hypothetical protein SrosN15_12993 [Streptomyces roseosporus NRRL
           15998]
 gi|239988372|ref|ZP_04709036.1| hypothetical protein SrosN1_13780 [Streptomyces roseosporus NRRL
           11379]
 gi|291445358|ref|ZP_06584748.1| exonuclease [Streptomyces roseosporus NRRL 15998]
 gi|291348305|gb|EFE75209.1| exonuclease [Streptomyces roseosporus NRRL 15998]
          Length = 202

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 63/190 (33%), Gaps = 19/190 (10%)

Query: 1   MIRKNKMRKIVFDIETT---GLDSKN--DRIIEIG--AVELLDYSKTNRTFQVFLCPNGR 53
           M  ++     V D+E T   G         IIEIG   V+L    +  +  ++ + P   
Sbjct: 15  MGERDAYLLNVVDVEATCWEGQPPPGQVSEIIEIGLTVVDLRAGERLAKH-RLLVRPARS 73

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           K SP   +L G+T   +     F+          +       A    +D      + +  
Sbjct: 74  KVSPFCTELTGLTQTEVDGGLPFAEACR-VLAAEHRTGLLPWASWGDYDRNQFTRQCRAT 132

Query: 114 NKDPLDPSRIID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
                   R  +     T +   R+ P     L +     G+ +  R  H    D+  ++
Sbjct: 133 GTAYPFGQRHTNAKATFTAAYGLRRRPGMAQALET----AGLPLEGR-HHRGDDDAWNIA 187

Query: 169 DVYIKMMVGG 178
            + + +M  G
Sbjct: 188 ALVLDLMGRG 197


>gi|284054439|ref|ZP_06384649.1| Exonuclease RNase T and DNA polymerase III [Arthrospira platensis
           str. Paraca]
          Length = 827

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 21/137 (15%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
           +  F+    + +    L+LH         + +   I  +  +  + Q    I H+A+ D 
Sbjct: 12  YHAFV---AKNHPEPTLRLH---------QETLLDIVKQVDNLCHNQ--VIICHHAEHDQ 57

Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITI-----SHRSK 157
             +    +++        + I T  +A+++  +     L+ LCK   + +       R  
Sbjct: 58  RILKRSFKQVEISY-PNYQFICTCKLAKKQLANLPDYGLSYLCKTLDLRLNRQRFDDRHA 116

Query: 158 HGALLDSHLLSDVYIKM 174
           H A  D+     +Y  +
Sbjct: 117 HSASYDAQFTYQLYSYL 133


>gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1]
 gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1]
          Length = 893

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 30/139 (21%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ET+ LD     I  I             +F     P      P    LH    + L
Sbjct: 321 AIDLETSSLDPFECDIAGISL-----------SF----KPKEAYYIP----LHHRNAQNL 361

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            +K     +  +  +   +  A+ +  N KFD   +  +      +P+ P    DT+  A
Sbjct: 362 DEK----EVLKKLKEILEDPGAKIVGQNLKFDYKVLMVK----GIEPVPP--HFDTMIAA 411

Query: 131 RRKHP-SSRNDLNSLCKRY 148
               P   + +L+ L  ++
Sbjct: 412 YLIEPNEKKFNLDDLALKF 430


>gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
 gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
          Length = 893

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 30/139 (21%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ET+ LD  +  I  I             +F     P      P    LH    + L
Sbjct: 321 AIDLETSSLDPFDCDIAGISV-----------SF----KPKEAYYIP----LHHRNAQNL 361

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            +K     +  +  +   +  A+ +  N KFD   +  +      +P+ P    DT+  A
Sbjct: 362 DEK----EVLKKLKEILEDPGAKIVGQNLKFDYKVLMVK----GVEPVPP--HFDTMIAA 411

Query: 131 RRKHP-SSRNDLNSLCKRY 148
               P   + +L+ L  ++
Sbjct: 412 YLIEPNEKKFNLDDLALKF 430


>gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170]
 gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170]
          Length = 944

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 32/148 (21%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M    K   + FD ETTGL+     ++ I                 ++            
Sbjct: 364 MQNLMKQNSVCFDTETTGLNPLTAELVGIAFSWEAGKG-------FYI------------ 404

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                   F +DK     I      FF  +  E I  N K+D+  ++    ++       
Sbjct: 405 -------PFPEDKNQAQEIIETLRPFFESEMIEKIGQNLKYDIKVLHKYNIQVKG----- 452

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRY 148
            +  D++      +P  R++++ L + Y
Sbjct: 453 -KFFDSMLAHYLINPDMRHNMDVLSETY 479


>gi|229596616|ref|XP_001008163.2| exonuclease family protein [Tetrahymena thermophila]
 gi|225565201|gb|EAR87918.2| exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 567

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 59/147 (40%), Gaps = 13/147 (8%)

Query: 28  EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87
           E+  V +++Y+        ++ P  +K      K+ GIT   +K+ P++  + ++ ++  
Sbjct: 421 ELARVSIVNYNGHV-LLDTYVRPQ-KKIKNYLTKVSGITFTHIKNAPTYPEVKNKIFEIL 478

Query: 88  NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCK- 146
            ++    + H+ + D+         I  +P     I D  +    K    +  L  + K 
Sbjct: 479 KDK--IIVGHSVQHDLS-------SIKFEPPKDKMIRDISNYKELKQSGKKVSLKKMVKQ 529

Query: 147 RYGITISHRSKHGALLDSHLLSDVYIK 173
             GIT      H ++ D+     +Y K
Sbjct: 530 ELGITF-QEGSHDSISDARAALLIYKK 555


>gi|163753221|ref|ZP_02160345.1| hypothetical protein KAOT1_13712 [Kordia algicida OT-1]
 gi|161326953|gb|EDP98278.1| hypothetical protein KAOT1_13712 [Kordia algicida OT-1]
          Length = 182

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 66/171 (38%), Gaps = 10/171 (5%)

Query: 9   KIVFDIETTG-----LDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            I+ D+E T       + + + IIEIG  V   + S+  +   + + P   + S    +L
Sbjct: 7   IIIVDLEATCWNEPIPNGQVNEIIEIGICVLNTETSEITQNEGILIKPERSEISEFCTEL 66

Query: 63  HGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
             IT E +  +  SF    ++    +N +   W A   ++D+  +  + +  N +     
Sbjct: 67  TTITQELIDTEGISFVEACTKLRVEYNPKQYTW-ASYGQYDLNMLKRQCKLRNVEYPMGQ 125

Query: 122 RIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             I+   +    K    +  +N       I +   + H  + D+  ++ + 
Sbjct: 126 EHINVKTTFTEVKGLRKKVGMNGALNILKIPLEG-THHRGVDDAKNIAKIL 175


>gi|255711826|ref|XP_002552196.1| KLTH0B09416p [Lachancea thermotolerans]
 gi|238933574|emb|CAR21758.1| KLTH0B09416p [Lachancea thermotolerans]
          Length = 662

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 66/182 (36%), Gaps = 21/182 (11%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           +   + P+         +  GIT+E L++   +   + ++     +  +   I H+ + D
Sbjct: 359 YDSLVKPD-VPIVDYLTRYSGITEEKLENVTVTLEDVQNQLLKLVSADD-ILIGHSLQSD 416

Query: 103 VGFINAELQRINKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRY---GITISHRSKH 158
           +  +           L   +IIDT +    +  P  R  L  L   Y    I  S    H
Sbjct: 417 LNVLK----------LRHPKIIDTAVIFEHKAGPPFRPALKYLASEYLSQTIQNSEGLGH 466

Query: 159 GALLDSHLLSDVY-IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
            +  D+    ++  +K++ G   + FG   N +  F+   +       L    P +T +T
Sbjct: 467 DSFEDARACMELTKLKIVNG---LAFGVGVNTENLFQRLARAGVRSLCLNDYAPKYTELT 523

Query: 218 KE 219
             
Sbjct: 524 SS 525


>gi|170696330|ref|ZP_02887460.1| Exonuclease RNase T and DNA polymerase III [Burkholderia graminis
           C4D1M]
 gi|170138736|gb|EDT06934.1| Exonuclease RNase T and DNA polymerase III [Burkholderia graminis
           C4D1M]
          Length = 203

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 57/175 (32%), Gaps = 29/175 (16%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVE---LLDYSKTNRTFQVFLCPNG-RKNSPEA 59
           ++ M  +  D+E TGLD  +DRIIEI  V     LD         +        K     
Sbjct: 15  RSDMNLVWLDMEMTGLDPDSDRIIEIAVVVTNSTLDRMAEGPVLAIHQSDETLAKMDQWN 74

Query: 60  LKLH---GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQR 112
              H   G+ D       S      +   F  +      +    ++   D  F+   +  
Sbjct: 75  QNTHGRSGLIDRVKASTVSEIEATEQIRAFLAQYVPPGKSPMCGNSICQDRRFMARWMPE 134

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           +  +     R +D             + L  LC+R+   I      R+ H AL D
Sbjct: 135 L--ETFFHYRNLDV------------STLKELCRRWQPAIYKGFQKRAMHTALAD 175


>gi|157120012|ref|XP_001653487.1| oligoribonuclease, mitochondrial [Aedes aegypti]
 gi|157120014|ref|XP_001653488.1| oligoribonuclease, mitochondrial [Aedes aegypti]
 gi|108875101|gb|EAT39326.1| oligoribonuclease, mitochondrial [Aedes aegypti]
 gi|108875102|gb|EAT39327.1| oligoribonuclease, mitochondrial [Aedes aegypti]
          Length = 192

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 44/182 (24%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL-- 62
           ++   +  D+E TGL+ + DRI+EI  V      +          P+   + PE  ++  
Sbjct: 14  SQHNLVWIDLEMTGLEVEKDRILEIACVITNKNLEILER-----GPDIVIHEPE--EVLN 66

Query: 63  ------------HGITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFI 106
                        G+     + K           DF      E+      +    D  F+
Sbjct: 67  AMNEWCQTNHSKTGLIQAVRESKIDLQKAEQMVLDFVKKYCPEKACPLAGNTIYMDRMFL 126

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSK----HGAL 161
              + ++N+        + T+                LCKR+ G   S+       H AL
Sbjct: 127 YRYMPQLNEYLHYRIIDVSTVKE--------------LCKRWNGAVFSNCPPKKLVHRAL 172

Query: 162 LD 163
            D
Sbjct: 173 DD 174


>gi|238506411|ref|XP_002384407.1| RNA exonuclease, putative [Aspergillus flavus NRRL3357]
 gi|220689120|gb|EED45471.1| RNA exonuclease, putative [Aspergillus flavus NRRL3357]
          Length = 368

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 62/174 (35%), Gaps = 20/174 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E   +    + ++++ AV++L            + P  +  +       G+T + 
Sbjct: 158 VAIDCEMVPVGPGQNEVVQVCAVDVLSGEIVVDKG---VVPT-KPVTDWCTPWSGMTPQR 213

Query: 70  LKDKPS-------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           L+D          +    +E   F +  +   + H  + DV  +  +  ++    LD + 
Sbjct: 214 LEDMKREGKTVNGWEEARAEVLKFVDG-DTILVGHALRNDVRALKMQHAKV----LDTAT 268

Query: 123 IIDTLSIARRKHPSSRN--DLNSLCK-RYGITISH-RSKHGALLDSHLLSDVYI 172
           +              +    L +LC+   GI I   R+ H  + D+    +V +
Sbjct: 269 VTKHAVANEMVGSGCKRTWKLKTLCQDFLGINIQQSRNGHDCVEDTLATREVLL 322


>gi|328882628|emb|CCA55867.1| 3-to-5 oligoribonuclease [Streptomyces venezuelae ATCC 10712]
          Length = 200

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 22/168 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH 63
           R +  D E TGL   +D +IE+ A V   + +       + + P        PE + ++H
Sbjct: 4   RMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGDGVDIVIRPPDAALETMPEIVRQMH 63

Query: 64  ---GITDEFLKD---KPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKD 116
              G+ D          + + + +   +   E   A    ++   D GF+  ++  +   
Sbjct: 64  TASGLLDALAGGTTLADAEAQVLAYIREHVKEPGKAPLCGNSVSTDRGFLARDMPALESH 123

Query: 117 PLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                  + ++  +ARR +P          + Y  +      H AL D
Sbjct: 124 LHYRIVDVSSVKELARRWYP----------RAYFNSPEKNGNHRALAD 161


>gi|311741236|ref|ZP_07715060.1| oligoribonuclease [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303406|gb|EFQ79485.1| oligoribonuclease [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 215

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 53/169 (31%), Gaps = 23/169 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCP---NGRKNSPEALKLH 63
           R +  D+E TGLD +   I+E+ AV              + +        +      ++H
Sbjct: 15  RLVWIDLEMTGLDPERHVIVEVAAVITDGNLNILGEGIDLVVHATEEELAQMDSFVTEMH 74

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRINK 115
              G+  E  +   S            N     E  A    ++   D  FI   + R++ 
Sbjct: 75  ASSGLDKEICESTTSIGEAEDAVLALINEYCDPEHPAPLAGNSIATDRTFIRTYMPRLDS 134

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  +ARR HP            +         H AL D
Sbjct: 135 ALHYRMIDVSTIKELARRWHPR---------AYFNQP-DKGMAHRALQD 173


>gi|301167118|emb|CBW26697.1| hypothetical protein BMS_1877 [Bacteriovorax marinus SJ]
          Length = 197

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 79/199 (39%), Gaps = 37/199 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQ--VFL-CPNGRKNSP----- 57
           M+ + FDIE TGL +++D IIE G V    +  +     Q   ++ CP+  +  P     
Sbjct: 1   MKYLSFDIEATGL-AEDDLIIEFGMVPFCAETGEIAHELQRNWYIKCPSFEELKPKLDQW 59

Query: 58  ---EALKLHGITDEFLKDKP--SFSSIFSEFWD------FFNEQNAEWIA-----HNAKF 101
                 +L  I+    + +    F  I +E+ +      +F + + + I       N   
Sbjct: 60  VIDHNEEL--ISKAHAQGEELSKFKEILTEYLESEEVINYFGKSDKDKIILFGKSMN-AI 116

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLS-----IARRKHPSSRNDLNSLCKRYGITISHRS 156
           D+ F+N +L           +++D  S        +  P+     + L K + +      
Sbjct: 117 DLPFLNRDLGWDFMRKHFHHQVLDLSSVVIGLCDMKLLPNECQSGSGLMKYFKM---GDV 173

Query: 157 KHGALLDSHLLSDVYIKMM 175
            H AL D+   + +Y+ +M
Sbjct: 174 AHTALEDAVNTAKLYLMIM 192


>gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
 gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
          Length = 948

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 51/147 (34%), Gaps = 34/147 (23%)

Query: 4   KNKMRK--IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           KN M +  + FD ETTGL+     ++ I         +T + F V               
Sbjct: 369 KNLMNQTSVCFDTETTGLNPLTAELVGIAFSW-----ETGKGFYV--------------- 408

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
                  F +DK     +      FF   N E I  N K+D+  +      +        
Sbjct: 409 ------PFPEDKNEAQELIEVLRPFFENDNIEKIGQNLKYDIKVLAKYNVEVKGKLF--- 459

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY 148
              DT+      +P  R++++ L + Y
Sbjct: 460 ---DTMLAHYLINPDMRHNMDVLAETY 483


>gi|332373288|gb|AEE61785.1| unknown [Dendroctonus ponderosae]
          Length = 220

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 30/172 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR---KNSPEALKLH 63
           R +  D+E TGL+   D+I+E+  +    D +      ++ +              +K H
Sbjct: 44  RLVWIDMEMTGLNVDQDKIMEVACIVTDTDLNIVAEGLEIVINQPKETLDNMHEWCVKQH 103

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRINKD 116
              G+T+  LK + S         DF         +    ++   D  F+   + +++  
Sbjct: 104 GKTGLTEACLKSQTSLEQAEDSIMDFLRAHVTPHCSPLAGNSVYMDRFFLIKYMPKVHDY 163

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK-----HGALLD 163
                  + T+                LC+R+   +          H A  D
Sbjct: 164 LHYRIVDVSTIKE--------------LCRRWNTPVYKSVPKKEFQHRAQCD 201


>gi|296392793|ref|YP_003657677.1| exonuclease RNase T and DNA polymerase III [Segniliparus rotundus
           DSM 44985]
 gi|296179940|gb|ADG96846.1| Exonuclease RNase T and DNA polymerase III [Segniliparus rotundus
           DSM 44985]
          Length = 202

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 27/173 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG---RKNSPEALK 61
           K R +  D E TGL    D++IEI A V   + +  +    + +        +       
Sbjct: 5   KDRLLWVDCEMTGLRPGFDQLIEIAALVTDGELNIIDDGIDLVIHAEEDKLAQMDEYVTN 64

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRI 113
           +H   G+T+     + S +        +  E     + A    ++   D  F+  ++  +
Sbjct: 65  MHASSGLTEAVRASELSLAEAEERVLAYVKERFPAPRTAILAGNSIATDRSFLAKDMPEL 124

Query: 114 NKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             D     R++D  +I   +RR +P            +         H AL D
Sbjct: 125 --DAWLHYRMVDVSTIKELSRRWYPR---------IYFNQP-EKGLAHRALAD 165


>gi|308235417|ref|ZP_07666154.1| oligoribonuclease [Gardnerella vaginalis ATCC 14018]
 gi|311114824|ref|YP_003986045.1| cyanuric acid amidohydrolase [Gardnerella vaginalis ATCC 14019]
 gi|310946318|gb|ADP39022.1| cyanuric acid amidohydrolase [Gardnerella vaginalis ATCC 14019]
          Length = 235

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 23/169 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN---SPEALKLH 63
           R I  D E TGLD  +D + E+  V    +    +    + + P+       +     +H
Sbjct: 16  RLIWIDCEMTGLDIFHDELCEVSVVPTDFNLKVLDDGIDLVIKPSDAAVAHMNDFVRNMH 75

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINK 115
              G+ DE  K+         +  ++          A    ++   D  F++  +  +  
Sbjct: 76  TSSGLVDECNKNGLPLEEAQKQVVEYVKRFLPEHGKAHLAGNSVGSDKKFLDRYMPDLMA 135

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +       + TL  I+RR +P            Y    +    H AL D
Sbjct: 136 NLHYRVIDVSTLKEISRRLYP----------DVYRNKPAKHGGHRALAD 174


>gi|134105090|pdb|2OA8|A Chain A, Crystal Structure Of Mtrex1 With Ssdna
 gi|134105091|pdb|2OA8|B Chain B, Crystal Structure Of Mtrex1 With Ssdna
          Length = 233

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 36/197 (18%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIG--AVELLDYSKT----------------NRTFQV 46
           +    I  D+E TGL S    + E+   AV       T                     +
Sbjct: 7   HXQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSL 66

Query: 47  FLCPNGRKNSPEALKLHGITDE--FLKDKPSFSS-IFSEFWDFFNE--QNAEWIAHN-AK 100
            + P G+  SP A ++ G++     ++ +  F   +      F     Q    +AHN  +
Sbjct: 67  CIAP-GKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDR 125

Query: 101 FDVGFINAELQRINKD-PLDPSRIIDTLSIARRKHP---------SSRNDLNSLCKRYGI 150
           +D   +  EL R++   PLD +  +D+++  +                  L S+  R   
Sbjct: 126 YDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYW 185

Query: 151 TISHRSKHGALLDSHLL 167
             +    H A  D   L
Sbjct: 186 Q-APTDSHTAEGDVLTL 201


>gi|134104561|pdb|2IOC|B Chain B, The Crystal Structure Of Trex1 Explains The 3' Nucleotide
           Specificity And Reveals A Polyproline Ii Helix For
           Protein Partenring
 gi|134104562|pdb|2IOC|A Chain A, The Crystal Structure Of Trex1 Explains The 3' Nucleotide
           Specificity And Reveals A Polyproline Ii Helix For
           Protein Partenring
          Length = 242

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 36/197 (18%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIG--AVELLDYSKT----------------NRTFQV 46
           +    I  D+E TGL S    + E+   AV       T                     +
Sbjct: 10  HXQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSL 69

Query: 47  FLCPNGRKNSPEALKLHGITDE--FLKDKPSFSS-IFSEFWDFFNE--QNAEWIAHN-AK 100
            + P G+  SP A ++ G++     ++ +  F   +      F     Q    +AHN  +
Sbjct: 70  CIAP-GKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDR 128

Query: 101 FDVGFINAELQRINKD-PLDPSRIIDTLSIARRKHP---------SSRNDLNSLCKRYGI 150
           +D   +  EL R++   PLD +  +D+++  +                  L S+  R   
Sbjct: 129 YDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYW 188

Query: 151 TISHRSKHGALLDSHLL 167
             +    H A  D   L
Sbjct: 189 Q-APTDSHTAEGDVLTL 204


>gi|50760099|ref|XP_417900.1| PREDICTED: similar to CGI-114 protein [Gallus gallus]
          Length = 233

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEAL---KL 62
            R +  D+E TGLD + D+I+E+   +   D +       + +          +    + 
Sbjct: 37  QRMVWVDLEMTGLDVEKDQILEMACLITDSDLNVLAEGPNLIIKQPDELLDSMSEWCKEH 96

Query: 63  H---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
           H   G+T    + K S      EF  F  +Q          ++   D  F++  + +  +
Sbjct: 97  HGKSGLTKAVKESKISLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQFMR 156

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P          + Y       + H AL D
Sbjct: 157 HLHYRIIDVSTVKELCRRWYP----------EEYEFAPKKAASHRALDD 195


>gi|319787041|ref|YP_004146516.1| exonuclease RNase T and DNA polymerase III [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465553|gb|ADV27285.1| Exonuclease RNase T and DNA polymerase III [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 189

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 70/184 (38%), Gaps = 36/184 (19%)

Query: 1   MIRKNKM-RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSP- 57
           M   + M R I  D+E TGLD+  D I+EI  V       T+    V    P    + P 
Sbjct: 1   MAIASGMDRLIWIDLEMTGLDTDRDSILEIATV------VTDAQLNVLAEGPELAISHPL 54

Query: 58  ---EALK-----LHGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
              EA+       HG +       D  +    + +   +   ++   + +    ++   D
Sbjct: 55  QVLEAMDDWNRNQHGRSGLWQRVLDSDVTLAQAEARTVAFLNEWVPAKASPMCGNSICQD 114

Query: 103 VGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
             F++  + R+ +     +  + TL  +ARR  P      ++L       +  ++ H AL
Sbjct: 115 RRFLHRLMPRLEQYFHYRNLDVSTLKELARRWCP------DALA-----GVGKQAAHTAL 163

Query: 162 LDSH 165
            D H
Sbjct: 164 SDVH 167


>gi|89255617|ref|YP_512978.1| oligoribonuclease [Francisella tularensis subsp. holarctica LVS]
 gi|134302673|ref|YP_001122642.1| oligoribonuclease [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156501565|ref|YP_001427630.1| oligoribonuclease [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010118|ref|ZP_02275049.1| oligoribonuclease [Francisella tularensis subsp. holarctica FSC200]
 gi|187932223|ref|YP_001892208.1| oligoribonuclease [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|254367012|ref|ZP_04983048.1| oligoribonuclease [Francisella tularensis subsp. holarctica 257]
 gi|254368614|ref|ZP_04984630.1| oligoribonuclease [Francisella tularensis subsp. holarctica FSC022]
 gi|290953723|ref|ZP_06558344.1| oligoribonuclease [Francisella tularensis subsp. holarctica URFT1]
 gi|295312909|ref|ZP_06803630.1| oligoribonuclease [Francisella tularensis subsp. holarctica URFT1]
 gi|122501292|sp|Q2A5M3|ORN_FRATH RecName: Full=Oligoribonuclease
 gi|166216258|sp|A7N9M1|ORN_FRATF RecName: Full=Oligoribonuclease
 gi|166216260|sp|A4J020|ORN_FRATW RecName: Full=Oligoribonuclease
 gi|89143448|emb|CAJ78624.1| Oligoribonuclease [Francisella tularensis subsp. holarctica LVS]
 gi|134050450|gb|ABO47521.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418]
 gi|134252838|gb|EBA51932.1| oligoribonuclease [Francisella tularensis subsp. holarctica 257]
 gi|156252168|gb|ABU60674.1| oligoribonuclease [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157121517|gb|EDO65708.1| oligoribonuclease [Francisella tularensis subsp. holarctica FSC022]
 gi|187713132|gb|ACD31429.1| oligoribonuclease (3'->5' exoribonuclease) [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 178

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 56/163 (34%), Gaps = 23/163 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCPNG--RKNSPEALKLH---G 64
            D+E TGLD  + +IIEI A+            +      P+      +   +K H   G
Sbjct: 10  IDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETG 69

Query: 65  IT----DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +T    D  +  + +   I      F   Q++    ++   D  F+   +  I++     
Sbjct: 70  LTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYR 129

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              + TL +  +     +            +   ++ H AL D
Sbjct: 130 MLDVTTLKLLNQYWGDGK------------SFEKKNTHKALDD 160


>gi|316970902|gb|EFV54758.1| RNA exonuclease 4 [Trichinella spiralis]
          Length = 255

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 58/165 (35%), Gaps = 15/165 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D E  G +  +D +    A   +  S+    +  F+ PN          + G+  
Sbjct: 82  KIIALDCEFVGSEENDDLL----ARVSICNSEGKCVYDKFVKPN-VPVKDYRTAVSGVRK 136

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L +  SF ++  E  +    +    + HN   D+  +     +             +L
Sbjct: 137 KDLINADSFDAVQREVCEILKGR--VLVGHNVSKDLSVLALSHSKRMIRDTSTFPPFRSL 194

Query: 128 SIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVY 171
             A+ + P     L +L K   G+ I     H ++ D+     +Y
Sbjct: 195 --AKTRFP----KLKTLAKLILGMDIQSGE-HCSIEDARATMFLY 232


>gi|283783530|ref|YP_003374284.1| exonuclease [Gardnerella vaginalis 409-05]
 gi|298252612|ref|ZP_06976406.1| oligoribonuclease [Gardnerella vaginalis 5-1]
 gi|283441129|gb|ADB13595.1| exonuclease [Gardnerella vaginalis 409-05]
 gi|297532976|gb|EFH71860.1| oligoribonuclease [Gardnerella vaginalis 5-1]
          Length = 235

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 25/170 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN---SPEALKLH 63
           R I  D E TGLD  +D + E+  V    +    +    + + P+       +     +H
Sbjct: 16  RLIWIDCEMTGLDIFHDELCEVSVVPTDFNLKVLDDGIDLVIKPSDAAVAHMNDFVRNMH 75

Query: 64  ---GITDEFLKDKPSFSS----IFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINK 115
              G+ DE+ K+  S       +      F   +  A    ++   D  F++  +  +  
Sbjct: 76  TSSGLVDEWNKNGLSLEETQKQVVEYVKRFLPARGKAHLAGNSVGSDKKFLDRYMPDLMA 135

Query: 116 DPLDPSRIIDTL-SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163
           +       + TL  I+RR +P   RN             +    H AL D
Sbjct: 136 NLHYRVIDVSTLKEISRRLYPDVYRNK-----------PAKHGGHRALAD 174


>gi|303278438|ref|XP_003058512.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459672|gb|EEH56967.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 605

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 21/168 (12%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT- 66
           R +  D E     S    +I +  V+              + P G     +   + G++ 
Sbjct: 165 RLVALDCEMCETTSDARALIGVSVVDERGKVLLK----TLVKPPGVVVDYK-TDVTGLSA 219

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +F +   + + +  E       +    + H    D+  +              + +IDT
Sbjct: 220 KDFTRVTTTLADVQRELVSIVTAE-TILVGHGLVHDLRALK----------FHHAPVIDT 268

Query: 127 -LSIARRKHPSSRNDLNSLCKR-YGITIS--HRSKHGALLDSHLLSDV 170
            +       P S   L  LCKR  G+ +       H ++ D+    ++
Sbjct: 269 AMLFEYENLPRSTPGLADLCKRLLGVEMRKGGDGAHDSVEDAKAAMEL 316


>gi|300121483|emb|CBK22002.2| unnamed protein product [Blastocystis hominis]
          Length = 257

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 54/174 (31%), Gaps = 16/174 (9%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIE-IGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +    +  D E  G+   N+  +  I  V           +  F+ P          + 
Sbjct: 74  ASDTPVVAIDCEMVGVGPNNESALARISIVNYYGAIL----YDSFVKPPSAVTDYR-TQW 128

Query: 63  HGITDEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            GI  E L+     +      +  D    +N   + H+   D   +     R        
Sbjct: 129 SGIRPEDLEGDRVVTLRE-AQDVADRL-MKNRIVVGHSISNDFEALMMHHPRRLIRDTAY 186

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIK 173
            R      + + K+    + L  L KR +G  I    +H ++ D+     +Y K
Sbjct: 187 YRPF----MRKWKNKWLPHKLQYLLKREFGTAI-QEGEHDSIDDARATLLLYKK 235


>gi|203287988|ref|YP_002223003.1| DNA polymerase I [Borrelia recurrentis A1]
 gi|201085208|gb|ACH94782.1| DNA polymerase I [Borrelia recurrentis A1]
          Length = 922

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 30/146 (20%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +  K   I  D ETT ++     II I            + F+ +          E  + 
Sbjct: 349 QLKKASYIAIDTETTSINVYESNIIGISVSF--------KEFESY------YIPIETKEK 394

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           + I  ++         I  +F + FN Q  + I  N KFD   +    +R   + +  S 
Sbjct: 395 NSIGKDY---------IIQKFNELFNSQP-KLIGQNYKFDYKVL----KRHGFNVI--SA 438

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
             DT+  A    P+++  L+ L  +Y
Sbjct: 439 YFDTMIAAYVIDPNTKVSLDFLAAKY 464


>gi|218441140|ref|YP_002379469.1| DNA polymerase I [Cyanothece sp. PCC 7424]
 gi|218173868|gb|ACK72601.1| DNA polymerase I [Cyanothece sp. PCC 7424]
          Length = 966

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 61/197 (30%), Gaps = 47/197 (23%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N  + + +D ETT L+ K+  ++ IG                   P      P      
Sbjct: 372 TNPAQPVAWDTETTSLEPKDTTLVGIGCCWGEQ-------------PTEVAYIP------ 412

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
              +    ++     + S        +N   +  N KFD   +      +NK       +
Sbjct: 413 --LNHTEGEQLPQEEVLSALSVILESENYPKVFQNTKFDRIVL------LNKGIKLAGVV 464

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY------------GITISHRSKHGALL--------D 163
            DT+  +    P   + L+ LC+RY             I  +    H +L         D
Sbjct: 465 FDTMLASYVLRPELSHKLSDLCERYLENIKALNYRDLEIPKTQTIAHLSLEKVAHYCGMD 524

Query: 164 SHLLSDVYIKMMVGGSQ 180
           ++    +  K++    Q
Sbjct: 525 AYATFMLVPKLIAELKQ 541


>gi|118095856|ref|XP_413869.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 301

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 54/169 (31%), Gaps = 16/169 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + +  D E  G   +  R  E+   ++   D       +  ++ P          +  GI
Sbjct: 97  KYVAIDCEMVGTGPRG-RQSELARCSIVSYDGDVI---YDKYVLP-LLPVVDFRTRWSGI 151

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   ++    F +   E      ++    + H    D   +     +   +    +  I 
Sbjct: 152 TKRHMESAIPFRAAQEEILKILKDR--IVVGHAIHNDFQALKYFHPK---ERTRDTSRIP 206

Query: 126 TLSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVY 171
            L+      P +   L SL +      I +  +  H ++ D+    ++Y
Sbjct: 207 LLNQRAGLPPGANASLKSLARHLLQKKIQVGCKG-HSSVEDARTAMELY 254


>gi|227548676|ref|ZP_03978725.1| oligoribonuclease [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079239|gb|EEI17202.1| oligoribonuclease [Corynebacterium lipophiloflavum DSM 44291]
          Length = 211

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 56/175 (32%), Gaps = 23/175 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSP--- 57
           I     R +  D+E TGLD     I+E+ A V   D +       + +     + +    
Sbjct: 5   IATKNDRIVWIDLEMTGLDPDKHVIVEVAALVTDADLNILGDGIDIVVHATDAQLAKMDD 64

Query: 58  -------EALKLHGITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAE 109
                  +   L  IT   +    +  ++        +    A    ++   D  FI A 
Sbjct: 65  VVVSMHTDNGLLTEITASTVSLADAEDAVLGLVTKHCDPAHPAPLAGNSIATDRSFIRAH 124

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + R++         + T+  +ARR  P          K Y         H AL D
Sbjct: 125 MPRLDAALHYRMIDVSTVKELARRWFP----------KAYFNQPDKGMSHRALAD 169


>gi|309812148|ref|ZP_07705906.1| oligoribonuclease [Dermacoccus sp. Ellin185]
 gi|308433835|gb|EFP57709.1| oligoribonuclease [Dermacoccus sp. Ellin185]
          Length = 209

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 62/174 (35%), Gaps = 24/174 (13%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSP---E 58
           R +  R +  D E TGLD +ND +IE+ A V   + ++      V + P           
Sbjct: 9   RAHTDRIVWIDCEMTGLDLENDALIEVAALVTDFELNQLGDGVDVVIKPEPAALEQMGDF 68

Query: 59  ALKLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAEL 110
              +H   G+  E L +  S     +   ++          A    +    D GF+  ++
Sbjct: 69  VRDMHTKSGLLAE-LDEGVSMEEAQALVLEYVMRHAPEAGKAPLGGNTVSTDRGFLERDM 127

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++       +  + ++  ++RR +P            +     H   H AL D
Sbjct: 128 PQLAGHLHYRTIDVSSIKELSRRWYPR---------AYFNAPAKHGG-HRALAD 171


>gi|301781889|ref|XP_002926359.1| PREDICTED: ERI1 exoribonuclease 3-like isoform 2 [Ailuropoda
           melanoleuca]
          Length = 160

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 49/139 (35%), Gaps = 15/139 (10%)

Query: 39  KTNRTFQVFLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN------ 91
           +   TF +++ P      +P   +L GI    +  +PS   +     ++  ++       
Sbjct: 2   EIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNV 61

Query: 92  -AEWIAHNAKFDVG-FINAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKR 147
            + ++     +D+   +  + Q +     D  +    L  A         +N L  + K 
Sbjct: 62  KSIFVT-CGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK- 119

Query: 148 YGITISH-RSKHGALLDSH 165
            G+++ H    H  + D  
Sbjct: 120 -GLSLQHIGRPHSGIDDCK 137


>gi|119627450|gb|EAX07045.1| prion protein interacting protein, isoform CRA_d [Homo sapiens]
 gi|194375784|dbj|BAG57236.1| unnamed protein product [Homo sapiens]
 gi|296488925|gb|DAA31038.1| ERI1 exoribonuclease 3 isoform 2 [Bos taurus]
          Length = 160

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 49/139 (35%), Gaps = 15/139 (10%)

Query: 39  KTNRTFQVFLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN------ 91
           +   TF +++ P      +P   +L GI    +  +PS   +     ++  ++       
Sbjct: 2   EIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNV 61

Query: 92  -AEWIAHNAKFDVG-FINAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKR 147
            + ++     +D+   +  + Q +     D  +    L  A         +N L  + K 
Sbjct: 62  KSIFVT-CGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK- 119

Query: 148 YGITISH-RSKHGALLDSH 165
            G+++ H    H  + D  
Sbjct: 120 -GLSLQHIGRPHSGIDDCK 137


>gi|114053091|ref|NP_001039944.1| ERI1 exoribonuclease 3 isoform 2 [Bos taurus]
 gi|82571565|gb|AAI10160.1| Exoribonuclease 3 [Bos taurus]
          Length = 160

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 49/139 (35%), Gaps = 15/139 (10%)

Query: 39  KTNRTFQVFLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN------ 91
           +   TF +++ P      +P   +L GI    +  +PS   +     ++  ++       
Sbjct: 2   EIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNV 61

Query: 92  -AEWIAHNAKFDVG-FINAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKR 147
            + ++     +D+   +  + Q +     D  +    L  A         +N L  + K 
Sbjct: 62  KSIFVT-CGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK- 119

Query: 148 YGITISH-RSKHGALLDSH 165
            G+++ H    H  + D  
Sbjct: 120 -GLSLQHIGRPHSGIDDCK 137


>gi|283780009|ref|YP_003370764.1| exonuclease RNase T and DNA polymerase III [Pirellula staleyi DSM
           6068]
 gi|283438462|gb|ADB16904.1| Exonuclease RNase T and DNA polymerase III [Pirellula staleyi DSM
           6068]
          Length = 196

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 63/175 (36%), Gaps = 11/175 (6%)

Query: 10  IVFDIETT---GLDSKN--DRIIEIGA--VELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +V D+E+T   G         IIE+G   V++    +  +   + + P   + S    +L
Sbjct: 9   LVVDVESTCWQGPPPHGQLSEIIEVGLCTVDVRKRQRLAKRC-IMIKPVRSRLSEFCTRL 67

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             + DE L    + +   S              A    +D        + +         
Sbjct: 68  TTLRDEDLVGAGTLADAVS-ILKREYRSPDRLWASWGDYDRRQFERVCKELTVPYPFGVS 126

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            ++  ++    +  +R   ++  C+R GI +   + H  + D+  ++ ++  +M 
Sbjct: 127 HLNIKTLFAVLYGDNREIGVDEACERIGIPMEG-THHRGVDDAWNIAAIFCHLME 180


>gi|302911266|ref|XP_003050455.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256731392|gb|EEU44742.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 627

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 92/265 (34%), Gaps = 43/265 (16%)

Query: 1   MIRKNKMRKIVFDIETT----GLDSKND--RIIEIGAVELLDYSKTNRTFQ-VFLCPNGR 53
           + + N  R +V  + TT    G+    D   +IE+G + L   S    T + V + P   
Sbjct: 6   LPQLNIDRYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDANSLEEITHESVLVKPVNT 65

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEF----WDFFNEQNAEWI-----AHNAKFDVG 104
             +P    L  +T E +++  +F    + F     ++   +N +++     A + +  + 
Sbjct: 66  PITPLCTSLTTLTWEHVRNAGTFRDAITRFDTFATEYLTSKNLDFVFVTLDAWDLRVQLP 125

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGI------- 150
               +   +    L  SR  D  +  +R         P   + L+++C    +       
Sbjct: 126 REARDKAVVLPPYLQHSRTFDLRTEYQRWQQHHPESLPFGPSMLSNICAALEVEPVQSSA 185

Query: 151 TISHR-SKH----------GALLDSHLLSDVYIKMMVGGS--QINFGFKTNEDRFFKEEK 197
            I H    H           A+ ++  L+ V   ++      Q +    T       + +
Sbjct: 186 PIKHNLPFHLQALAPASPRRAMEEAITLARVLRGLIRKSQPPQEHPDVLTRPMDARADVR 245

Query: 198 KTVPNISLLKRDKPLFTRITKEELD 222
             +   S +     L    T+ EL+
Sbjct: 246 AFLSERSKVLHMSGLPHDTTQSELE 270


>gi|306819268|ref|ZP_07452979.1| oligoribonuclease [Mobiluncus mulieris ATCC 35239]
 gi|304648050|gb|EFM45364.1| oligoribonuclease [Mobiluncus mulieris ATCC 35239]
          Length = 208

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 60/178 (33%), Gaps = 28/178 (15%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNS--- 56
           M +      +  D E TGLD   D +IEIG  V   D +  +    + + P+        
Sbjct: 4   MTKALTDALVWVDCEMTGLDLATDELIEIGVIVTDFDLNPLDTGIDLLIKPSQTALDNMG 63

Query: 57  PEALKLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINA 108
               ++H   G+ DE L      +    +  ++          A    ++   D  F+  
Sbjct: 64  DFVREMHTKSGLLDE-LDHGLPVTEAARQVLEYVQRFVPEAGKAPLAGNSVGTDKTFLKK 122

Query: 109 ELQRINKDPLDPSRIIDTLSIA---RRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++   +       RI+D  SI     R  P          K YGI       H AL D
Sbjct: 123 QMP--DFVDWLHYRIVDVSSIKELTARWFP----------KVYGIAPEKFGNHRALGD 168


>gi|254583524|ref|XP_002497330.1| ZYRO0F03036p [Zygosaccharomyces rouxii]
 gi|238940223|emb|CAR28397.1| ZYRO0F03036p [Zygosaccharomyces rouxii]
          Length = 251

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 57/163 (34%), Gaps = 20/163 (12%)

Query: 1   MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNS 56
           M  K  +    +  D E TGLD  +DRIIEI  +    +        ++  +  +     
Sbjct: 30  MSEKRSIWKPLVWVDCEMTGLDHNSDRIIEICCIITDGHLSVVDNNCYESVIHCDKSILD 89

Query: 57  ---PEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGF 105
              P  ++ H   G+T + L    +   +  E   F  +     +      ++   D  F
Sbjct: 90  QMGPWCVEHHGSSGLTQKVLDSDKTREQVEEELLQFIRKYVPEPRTGVLSGNSIHMDRLF 149

Query: 106 INAELQRINKDPLDPSRIIDT-LSIARRKHPS----SRNDLNS 143
           +  +  R+ +        + T + ++ R +P         L +
Sbjct: 150 MLKDFPRVLEHLHYRIVDVSTIMEVSYRHNPGLASQQPKKLGA 192


>gi|115314122|ref|YP_762845.1| oligoribonuclease [Francisella tularensis subsp. holarctica OSU18]
 gi|122325833|sp|Q0BNX6|ORN_FRATO RecName: Full=Oligoribonuclease
 gi|115129021|gb|ABI82208.1| oligoribonuclease [Francisella tularensis subsp. holarctica OSU18]
          Length = 178

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 56/163 (34%), Gaps = 23/163 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCPNG--RKNSPEALKLH---G 64
            D+E TGLD  + +IIEI A+            +      P+      +   +K H   G
Sbjct: 10  IDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETG 69

Query: 65  IT----DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +T    D  +  + +   I      F   Q++    ++   D  F+   +  I++     
Sbjct: 70  LTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYR 129

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              + TL +  +     +            +   ++ H AL D
Sbjct: 130 MLDVTTLKLLNQYWGDGK------------SFEKKNTHKALDD 160


>gi|50287235|ref|XP_446047.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525354|emb|CAG58971.1| unnamed protein product [Candida glabrata]
          Length = 250

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 32/183 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV------ELLDYSKTNRTFQVFLCPNGRK 54
           M   N    +  D E TGLD  ND IIEI  +      + LD     + ++  +     K
Sbjct: 32  METSNTKPLVWIDCEMTGLDHVNDEIIEICCIVTDGELKNLDTETKEQCYESVVHCPKEK 91

Query: 55  NSP---EALKLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDV 103
                   L  H   G+ D+ L  K +   +  E  ++       ++      ++   D 
Sbjct: 92  LDAMDQWCLDHHGSSGLMDKVLASKKTKEQVEEELLNYLQKWIPEKRVGILAGNSVHMDR 151

Query: 104 GFINAELQRINKDPLDPSRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
            F+  +  R+        RI+D    + +ARR +P     L +      +     + H A
Sbjct: 152 LFMLKDFPRV--VQYLHYRIVDVSSIMEVARRHNP----SLTA------VVPKKEAAHTA 199

Query: 161 LLD 163
             D
Sbjct: 200 KSD 202


>gi|326382785|ref|ZP_08204475.1| oligoribonuclease [Gordonia neofelifaecis NRRL B-59395]
 gi|326198375|gb|EGD55559.1| oligoribonuclease [Gordonia neofelifaecis NRRL B-59395]
          Length = 199

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 23/171 (13%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG---RKNSPEALK 61
           + + +  D E TGLD  +D++IEI A V   D +       V +  +            K
Sbjct: 2   QDKLVWIDCEMTGLDVGSDKLIEIAALVTDSDLNILGEGVDVVIHADDEALAAMPDVVTK 61

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRI 113
           +H   G+T+E      + +       D+  E       A    ++   D GFI  ++  +
Sbjct: 62  MHADSGLTEEVRASTVTLAEAEKAVLDYLREHITTAGAAPLAGNSIATDRGFIARDMPEL 121

Query: 114 NKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           N         + ++  + RR  P            +G        H AL D
Sbjct: 122 NAYLHYRMVDVSSIKELCRRWFPP---------IYFGQP-QKGLAHRALAD 162


>gi|302681013|ref|XP_003030188.1| hypothetical protein SCHCODRAFT_57864 [Schizophyllum commune H4-8]
 gi|300103879|gb|EFI95285.1| hypothetical protein SCHCODRAFT_57864 [Schizophyllum commune H4-8]
          Length = 208

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 63/177 (35%), Gaps = 34/177 (19%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +    +  D E TGLD   D+IIEI   +   +    +   +  +  +            
Sbjct: 15  DDGPIVWVDCEMTGLDHNKDKIIEIAVLITNGNLEIVDEGVEYIIRTDKSVLDGMDEWCT 74

Query: 64  ------GITDEFLKDKP-----SFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQ 111
                 G+T   L   P     + S++ +    +   ++ A    ++   D  F+  E+ 
Sbjct: 75  TQHGKSGLTAACLA-SPHTTSSAESAVLAYIQKWVPTQRTAVLAGNSVHVDRMFLANEMP 133

Query: 112 RINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISH--RSKHGALLD 163
           R+  D L   RIID  SI   ARR +P              I +     S H AL D
Sbjct: 134 RL-VDWLH-YRIIDVSSIKELARRWYPQ-------------IPVPKLSESSHRALDD 175


>gi|312199001|ref|YP_004019062.1| exonuclease RNase T and DNA polymerase III [Frankia sp. EuI1c]
 gi|311230337|gb|ADP83192.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EuI1c]
          Length = 238

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 27/171 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFL---CPNGRKNSPEALKLH 63
           R +  D E TGLD  +D ++E+   V   + +       + +    P      P    +H
Sbjct: 15  RLVWIDCEMTGLDPASDVLLEVACLVTDGELNVVGDGVDLVISAPDPVLETMVPVVRDMH 74

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINK 115
              G+T+       + +    +   +        + A    ++   D  F+   +  +  
Sbjct: 75  ATSGLTEAVRASTLTVAEAEQQVLAYVRTLVPENRRAPLCGNSIATDRTFLARYMPEL-- 132

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           D     R+ID  S+   ARR +P          + Y    + R  H AL D
Sbjct: 133 DSYLHYRMIDVSSVKELARRWYP----------RAYYAAPAKRGGHRALAD 173


>gi|195576205|ref|XP_002077967.1| GD23197 [Drosophila simulans]
 gi|194189976|gb|EDX03552.1| GD23197 [Drosophila simulans]
          Length = 353

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 26/146 (17%)

Query: 9   KIVFDIETTGLDSKNDR---IIEIGAVELLDYSKTN-----------------RTFQVF- 47
             V D+ETT L +  +    I E+          T                  R      
Sbjct: 20  FAVLDLETTNLPAYRNNRVSITELCIYAFEAALLTKKKEEQNQDEQQELPAAPRVLHKLN 79

Query: 48  -LCPNGRKNSPEALKLHGITDEFLKDKPSFS-SIFSEFWDFFNEQNAE--WIAHN-AKFD 102
            L        PEA ++ G+++  L+ +             F     +    +AHN   FD
Sbjct: 80  VLFQPSMVVDPEAERITGLSNYLLERESQLDTDAAQLIVSFLKHLPSPVCLVAHNGWGFD 139

Query: 103 VGFINAELQRINKDPLDPSRIIDTLS 128
              +    +++N +       +D+L 
Sbjct: 140 FPILRQAFEKLNIELPQSLTCVDSLR 165


>gi|254393010|ref|ZP_05008173.1| oligoribonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|294812789|ref|ZP_06771432.1| Oligoribonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|326441260|ref|ZP_08215994.1| oligoribonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|197706660|gb|EDY52472.1| oligoribonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|294325388|gb|EFG07031.1| Oligoribonuclease [Streptomyces clavuligerus ATCC 27064]
          Length = 200

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 28/171 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH 63
           R +  D E TGL   +D +IE+ A V   + +       + + P     +  PE + ++H
Sbjct: 4   RMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALATMPEVVRQMH 63

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINK 115
              G+ DE L    + +        +  E       A    ++   D GF++ ++  +  
Sbjct: 64  TASGLLDE-LAGGTTLADAEERVLAYIREHVREPGKAPLCGNSVGTDRGFLSRDMPAL-- 120

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +     RI+D  S+   ARR +P          + Y  +      H AL D
Sbjct: 121 ESWLHYRIVDVSSVKELARRWYP----------RAYFNSPEKSGNHRALAD 161


>gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251]
 gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251]
          Length = 902

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 28/146 (19%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
                  + FD ETTGLD +ND ++        D +        +L    +         
Sbjct: 327 ELRDDTIVAFDTETTGLDYENDSLVGFSFCFNEDEAYYVPIAHFYLGVGEQ--------- 377

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             I+ E    K +   IF          N+  + HN KFD+ F+   L     D      
Sbjct: 378 --ISQED--AKIAIKKIF----------NSRVVGHNIKFDLHFVIRFLGEGELDIFA--- 420

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
             D++ +A   +P S   L+ L ++ 
Sbjct: 421 --DSMILAWLINPESALSLDKLSEKL 444


>gi|19113423|ref|NP_596631.1| exoribonuclease Rex4 (predicted) [Schizosaccharomyces pombe 972h-]
 gi|74676188|sp|O94375|REXO4_SCHPO RecName: Full=RNA exonuclease 4
 gi|4007761|emb|CAA22342.1| exoribonuclease Rex4 (predicted) [Schizosaccharomyces pombe]
          Length = 260

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 15/167 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D E  G+    D +  +  V +++Y      +  ++ P  +        + G+  
Sbjct: 92  KYIAMDCEMVGV---ADDMSVLARVSIVNYHGHV-VYDTYVRPKEKVTDWR-TWVSGVKS 146

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++D PSF  + +E     + +    + H    D+  +      +   P    R     
Sbjct: 147 FHMRDAPSFEKVQAEVAKILDNR--VLVGHAVHNDLKVL------LLSHPRRMIRDTSRF 198

Query: 128 SIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIK 173
           S  R+        L  L +   G  I     H ++ D+    ++Y K
Sbjct: 199 SGYRKLAKGRTPGLKKLAEVILGRDIQSGQ-HSSVQDAQATMELYKK 244


>gi|326487924|dbj|BAJ89801.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 271

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 56/176 (31%), Gaps = 21/176 (11%)

Query: 25  RIIEIGAVELLDY--SKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFS 81
            IIE  AV L+D    +    F+ ++ P      +    +L GI  E +           
Sbjct: 34  EIIEFPAV-LVDGATGRMESAFRRYVRPKHHPLLTQFCRELTGIRQEDVDGGVDLGEALW 92

Query: 82  EFWDFFNEQNAEWIAHNAK-----------FDVGFINAELQRINK--DPLDPSRIIDTLS 128
              D+  E  A   A N +           +D   +     R      P    + I+   
Sbjct: 93  LHDDWLKEATAG--AGNKRSVRLAVVTWGDWDCRTMLEFECRFKGIEKPSYFDQWINLRV 150

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             +       R +L    +  G+    R  H  L D+   + + + +M  G +I  
Sbjct: 151 PFQAAFGGGGRVNLQEAVRAAGLDWEGR-LHCGLDDALKTARLLVAIMRRGVKITI 205


>gi|34496784|ref|NP_900999.1| exonuclease I [Chromobacterium violaceum ATCC 12472]
 gi|34102639|gb|AAQ59004.1| exodeoxyribonuclease I [Chromobacterium violaceum ATCC 12472]
          Length = 472

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 68/228 (29%), Gaps = 32/228 (14%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDEFL 70
           D ET G   + DR  +   +    + ++      ++  P        +A  L GIT +  
Sbjct: 10  DYETFGAVPRQDRPSQFAGIRTDAELNEIGEPVMLYCRPAPDYLPTLQACLLTGITPQLC 69

Query: 71  KDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRINKDPLDPSRI 123
           + +  +                   + +N+ +FD       F    +    ++  +    
Sbjct: 70  RQQGVAEHEFAGVIERELATPATIGVGYNSLRFDDEVTRFLFWRNLIDPYAREWQNHCGR 129

Query: 124 IDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
            D L + R  +                +   L  L    G  ++H S H AL D      
Sbjct: 130 WDLLDLVRATYALRPDGIVWPKHEDGRTSFKLEHLSAANG--LAHASAHDALSDVRAT-- 185

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
           + +  ++   Q         D +    KK    + L   D      ++
Sbjct: 186 IALARLIRQRQPKLF-----DYYLTLRKKDAVKVQLSLHDPKPVLHVS 228


>gi|328675229|gb|AEB27904.1| Oligoribonuclease [Francisella cf. novicida 3523]
          Length = 178

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 53/167 (31%), Gaps = 31/167 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL--------- 62
            D+E TGLD  N RIIEI A+            +    P       E L           
Sbjct: 10  IDLEMTGLDVDNCRIIEIAAIITDKDLNIIAEAE----PIAIYQPDEVLATMNEWCIKTH 65

Query: 63  --HGITD----EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
              G+T       +  + +   I     +F   Q++    ++   D  F+   + +I+  
Sbjct: 66  AETGLTQRVKASTISTEAAEQQILEFIREFVPYQSSPLCGNSIWQDRRFLAKYMPKIDDY 125

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                  + TL +  +    S+                ++ H AL D
Sbjct: 126 CHYRMLDVTTLKLLNQYWGDSKG------------FDKKNTHKALDD 160


>gi|296086710|emb|CBI32345.3| unnamed protein product [Vitis vinifera]
          Length = 341

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 26/179 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D E  G  S     +++ A   L     N  F  ++ P     +    +L GIT+  
Sbjct: 139 IAIDCEKVGGGSDGS--LDLCARVCLIDEDENIIFHTYVQPQI-PVTNYRYELTGITEAH 195

Query: 70  LKDKPSFSSIFSEFWDFF------------NEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           L+D      +  +  +                +    + H+ + D+  +           
Sbjct: 196 LRDAMPLKEVREKVMEVLRNGESIGRLRLDGGKGRLLVGHDLRHDLDCLRMHY------- 248

Query: 118 LDPSRIIDTLSIARRKHPSS-RNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKM 174
                + DT         +     L SL ++Y G  I     H    D   +  +Y +M
Sbjct: 249 -PDHLLRDTAKYLPLMKTNLVSFSLKSLTQKYLGYDI-QSGMHDPYEDCVSVMRLYKRM 305


>gi|270002199|gb|EEZ98646.1| hypothetical protein TcasGA2_TC001174 [Tribolium castaneum]
          Length = 232

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 66/199 (33%), Gaps = 26/199 (13%)

Query: 10  IVFDIETTG---LDSKND--RIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKL 62
           +V D E T     D + +   IIE   V   +  +K    FQ ++ P    K S    +L
Sbjct: 32  LVLDFEATCWSNGDPRKNPAEIIEFPVVLYDVKNAKIIAEFQQYVMPVENPKLSDFCTEL 91

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQN--------------AEWIAHNAKFDV---GF 105
            GI    + +     +    F  +  E+               A+  A     D      
Sbjct: 92  TGIQQHQVDNGVPLQACLLLFSRWVAEKMRLYDMDFPNGESQAAKTCAFATWSDWDLGTC 151

Query: 106 INAELQRINKDPLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           +  E  R N       R  ID  ++ +R        L+      G+T    ++H  L D+
Sbjct: 152 LRKECIRKNIRIEKMYRKWIDIRALFKRYIRRPFIGLSGALAELGLTFEG-TEHCGLHDA 210

Query: 165 HLLSDVYIKMMVGGSQINF 183
              + +  KM+  G  +  
Sbjct: 211 RNTARLVGKMVDKGVVLQL 229


>gi|145579949|pdb|2O4G|A Chain A, Structure Of Trex1 In Complex With A Nucleotide
 gi|145579950|pdb|2O4G|B Chain B, Structure Of Trex1 In Complex With A Nucleotide
 gi|145579951|pdb|2O4G|C Chain C, Structure Of Trex1 In Complex With A Nucleotide
 gi|145579952|pdb|2O4G|D Chain D, Structure Of Trex1 In Complex With A Nucleotide
 gi|206581855|pdb|3B6O|A Chain A, Structure Of Trex1 In Complex With A Nucleotide And An
           Inhibitor Ion (Lithium)
 gi|206581856|pdb|3B6O|B Chain B, Structure Of Trex1 In Complex With A Nucleotide And An
           Inhibitor Ion (Lithium)
 gi|206581857|pdb|3B6O|C Chain C, Structure Of Trex1 In Complex With A Nucleotide And An
           Inhibitor Ion (Lithium)
 gi|206581858|pdb|3B6O|D Chain D, Structure Of Trex1 In Complex With A Nucleotide And An
           Inhibitor Ion (Lithium)
 gi|206581859|pdb|3B6P|A Chain A, Structure Of Trex1 In Complex With A Nucleotide And
           Inhibitor Ions (Sodium And Zinc)
 gi|206581860|pdb|3B6P|B Chain B, Structure Of Trex1 In Complex With A Nucleotide And
           Inhibitor Ions (Sodium And Zinc)
 gi|206581861|pdb|3B6P|C Chain C, Structure Of Trex1 In Complex With A Nucleotide And
           Inhibitor Ions (Sodium And Zinc)
 gi|206581862|pdb|3B6P|D Chain D, Structure Of Trex1 In Complex With A Nucleotide And
           Inhibitor Ions (Sodium And Zinc)
          Length = 247

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 36/197 (18%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIG--AVELLDYSKT----------------NRTFQV 46
           +    I  D+E TGL S    + E+   AV       T                     +
Sbjct: 12  HMQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSL 71

Query: 47  FLCPNGRKNSPEALKLHGITDE--FLKDKPSFSS-IFSEFWDFFNE--QNAEWIAHN-AK 100
            + P G+  SP A ++ G++     ++ +  F   +      F     Q    +AHN  +
Sbjct: 72  CIAP-GKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDR 130

Query: 101 FDVGFINAELQRINKD-PLDPSRIIDTLSIARRKHP---------SSRNDLNSLCKRYGI 150
           +D   +  EL R++   PLD +  +D+++  +                  L S+  R   
Sbjct: 131 YDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYW 190

Query: 151 TISHRSKHGALLDSHLL 167
             +    H A  D   L
Sbjct: 191 Q-APTDSHTAEGDVLTL 206


>gi|15029820|gb|AAH11133.1| Three prime repair exonuclease 1 [Mus musculus]
          Length = 314

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 36/197 (18%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIG--AVELLDYSKT----------------NRTFQV 46
           +    I  D+E TGL S    + E+   AV       T                     +
Sbjct: 10  HMQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGLPPPVPRPPRVVDKLSL 69

Query: 47  FLCPNGRKNSPEALKLHGITDE--FLKDKPSFSS-IFSEFWDFFNE--QNAEWIAHN-AK 100
            + P G+  SP A ++ G++     ++ +  F   +      F     Q    +AHN  +
Sbjct: 70  CIAP-GKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDR 128

Query: 101 FDVGFINAELQRINKD-PLDPSRIIDTLSIARRKHP---------SSRNDLNSLCKRYGI 150
           +D   +  EL R++   PLD +  +D+++  +                  L S+  R   
Sbjct: 129 YDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYW 188

Query: 151 TISHRSKHGALLDSHLL 167
             +    H A  D   L
Sbjct: 189 Q-APTDSHTAEGDVLTL 204


>gi|59624979|ref|NP_035767.4| three prime repair exonuclease 1 [Mus musculus]
 gi|59624981|ref|NP_001012236.1| three prime repair exonuclease 1 [Mus musculus]
 gi|47606196|sp|Q91XB0|TREX1_MOUSE RecName: Full=Three prime repair exonuclease 1; AltName: Full=3'-5'
           exonuclease TREX1
 gi|12751325|gb|AAK07621.1|AF319574_1 3'-5' exonuclease Trex1 [Mus musculus]
 gi|11092297|gb|AAD48775.2| 3'-5' exonuclease TREX1 [Mus musculus]
 gi|26352780|dbj|BAC40020.1| unnamed protein product [Mus musculus]
 gi|26366683|dbj|BAB26571.2| unnamed protein product [Mus musculus]
 gi|74179024|dbj|BAE42731.1| unnamed protein product [Mus musculus]
 gi|148689391|gb|EDL21338.1| three prime repair exonuclease 1, isoform CRA_a [Mus musculus]
 gi|148689392|gb|EDL21339.1| three prime repair exonuclease 1, isoform CRA_a [Mus musculus]
          Length = 314

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 36/197 (18%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIG--AVELLDYSKT----------------NRTFQV 46
           +    I  D+E TGL S    + E+   AV       T                     +
Sbjct: 10  HMQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSL 69

Query: 47  FLCPNGRKNSPEALKLHGITDE--FLKDKPSFSS-IFSEFWDFFNE--QNAEWIAHN-AK 100
            + P G+  SP A ++ G++     ++ +  F   +      F     Q    +AHN  +
Sbjct: 70  CIAP-GKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDR 128

Query: 101 FDVGFINAELQRINKD-PLDPSRIIDTLSIARRKHP---------SSRNDLNSLCKRYGI 150
           +D   +  EL R++   PLD +  +D+++  +                  L S+  R   
Sbjct: 129 YDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYW 188

Query: 151 TISHRSKHGALLDSHLL 167
             +    H A  D   L
Sbjct: 189 Q-APTDSHTAEGDVLTL 204


>gi|297816266|ref|XP_002876016.1| At3g50100 [Arabidopsis lyrata subsp. lyrata]
 gi|297321854|gb|EFH52275.1| At3g50100 [Arabidopsis lyrata subsp. lyrata]
          Length = 409

 Score = 53.7 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 59/169 (34%), Gaps = 21/169 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E    +   + ++ +G V+  D          F+ P+          + GIT E 
Sbjct: 141 VAVDCEMVLCEDGTEGLVRVGVVD-RDLKVI---LYEFVKPDKHIVDYR-TDITGITAED 195

Query: 70  LKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           +++   S + I      F +      + H+   D+  +           +D  ++IDT  
Sbjct: 196 IENATLSVADIQETLQPFLST-GTILVGHSLNRDLEVLK----------IDHPKVIDTAL 244

Query: 129 IARR--KHPSSRNDLNSLCKR-YGITISH-RSKHGALLDSHLLSDVYIK 173
           + R        R  LN+LCK   G  +      H  + D+     + + 
Sbjct: 245 VFRYSNTRKLRRPSLNNLCKSILGYEVRKTGVPHNCVHDAEAAMKLALA 293


>gi|307109202|gb|EFN57440.1| hypothetical protein CHLNCDRAFT_21343 [Chlorella variabilis]
          Length = 238

 Score = 53.7 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 62/170 (36%), Gaps = 17/170 (10%)

Query: 8   RKIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + +  D E  G+     R  +  +  +        +R    ++ PN +       K+ G+
Sbjct: 44  KVVAMDCEMVGVGPGGQRSALARVCILNSAGNVLLDR----WVRPNEKVTD-FRTKVSGV 98

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
               L+D P F  +  +  D    +    + H  + D+  +    +R +           
Sbjct: 99  RPSNLRDAPVFDEVQRQVSDLLKGR--IIVGHALENDLEALLLNHRRADVRDTAKYPP-- 154

Query: 126 TLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
            L  AR  +  P +   L +  ++ G+TI    +H  + D+     +Y+K
Sbjct: 155 -LMQARTGKLKPRALRHLAT--EQLGLTI-QEGEHSPVEDARAALYLYLK 200


>gi|317128939|ref|YP_004095221.1| exonuclease RNase T and DNA polymerase III [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473887|gb|ADU30490.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           cellulosilyticus DSM 2522]
          Length = 220

 Score = 53.7 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 75/211 (35%), Gaps = 9/211 (4%)

Query: 7   MRKIVFDIETTGLDSKN--DRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           M  +V+D+E      K     IIEIGA ++ L   K     Q+++ P        + K  
Sbjct: 1   MIAVVYDLELVKRFKKGQLSEIIEIGACKVDLTSLKIIDDIQIYMLPKNGYIPKSSRKFI 60

Query: 64  GITDEFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPS 121
            +T + +K    FS    +F  +   E++    +      V FI+  L+  +        
Sbjct: 61  NMTQDDVKSAIPFSDGMKKFIFWLQKEEDYFLCSWGKDDKVHFIDQCLRNNMKLKWFKNY 120

Query: 122 RIIDTLSIARRKHPSSRNDLN--SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             I    I +    +++N L   +      I       H  + D+   + + IK     +
Sbjct: 121 NDIQP-QIGKALKQNTKNQLGLKNALHLANIE-PVGQAHRGIDDTINTALLLIKYFDEVT 178

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
                    E   F+ ++K   N    K +K
Sbjct: 179 LRTNMITEKELNLFESKRKKRRNRPHSKSEK 209


>gi|94500535|ref|ZP_01307066.1| oligoribonuclease [Oceanobacter sp. RED65]
 gi|94427325|gb|EAT12304.1| oligoribonuclease [Oceanobacter sp. RED65]
          Length = 185

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 62/178 (34%), Gaps = 35/178 (19%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEA--- 59
            NK   I  D+E TGL+   DRIIEI  +       T+    V    P    + P++   
Sbjct: 7   LNKHNLIWIDLEMTGLEPAQDRIIEIATI------VTDSELNVLAEGPVLAIHQPDSLMN 60

Query: 60  ------LKLH---GIT----DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
                  + H   G+T    +  + ++ +     +    +  +  +    ++   D  F+
Sbjct: 61  NMDEWNTRTHGNSGLTKRVKESDIDEQEAVKQTIAFLQQYVGKGVSPMCGNSVHQDRRFL 120

Query: 107 NAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           N  +  +       +  + TL  +ARR  P     L             +  H AL D
Sbjct: 121 NKYMPELEDFFHYRNLDVSTLKELARRWAPEKLKGLQK-----------KGAHQALDD 167


>gi|77407463|ref|ZP_00784320.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus agalactiae H36B]
 gi|77173928|gb|EAO76940.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus agalactiae H36B]
          Length = 218

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           T+ +++  +P   +  L +L +   I ++    H A+ D+   + ++IK+    S +
Sbjct: 1   TVELSQVFYPCLEKYSLGALAESLNIELTD--AHTAIADARATAQLFIKLKAKISSL 55


>gi|210075270|ref|XP_002143012.1| YALI0B10824p [Yarrowia lipolytica]
 gi|199425163|emb|CAG82981.4| YALI0B10824p [Yarrowia lipolytica]
          Length = 184

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 56/165 (33%), Gaps = 18/165 (10%)

Query: 9   KIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            +  D E  G+  +   D++  +  V+       +   Q       R       ++ GIT
Sbjct: 20  YVAIDCEFVGVGPEGAHDQLARVSLVDYFGSVLLDVFVQ-----GPRPVVDYRTEVSGIT 74

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +++   F++         + +    + H+ K D+  +    ++ +          D+
Sbjct: 75  PELVQEGVEFNAARLAVVKLIDGK--VLVGHSIKHDLLVLQINWKKYSLR--------DS 124

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                         L  L +  G++I     H ++ D+  +  VY
Sbjct: 125 QDHRPFLRRDRPQKLKYLARGIGLSIQSGE-HSSVEDAQAVMAVY 168


>gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7]
 gi|89517759|gb|EAS20415.1| DNA  polymerase I [Flavobacteria bacterium BBFL7]
          Length = 946

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 32/139 (23%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD ETTGLD     ++ I              F     P  R    EA ++       
Sbjct: 375 VCFDTETTGLDPLTAELVGIAFSWEKGKG-----FY-LPIPEDR----EAAQV------- 417

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                    I  +   FF   + E +  N K+D+  ++    +   D   P  + DT+  
Sbjct: 418 ---------IVDQLKPFFESASIEKVGQNLKYDIKVLD----KYGVDVKGP--MFDTMLA 462

Query: 130 ARRKHPSSRNDLNSLCKRY 148
               +P  R++++ L + Y
Sbjct: 463 HYLINPDMRHNMDVLAETY 481


>gi|194698552|gb|ACF83360.1| unknown [Zea mays]
 gi|195655181|gb|ACG47058.1| hypothetical protein [Zea mays]
          Length = 366

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 8/127 (6%)

Query: 90  QNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH--PSSRNDLNSLCK 146
               W  HN   FD   I      I + P  P  +IDTL +  +     +    L SL  
Sbjct: 2   HGRVWAGHNIVHFDSMIIMDAFAEIGRPPPQPKAMIDTLPLLTQCFGPRAGDMKLASLAN 61

Query: 147 RYGITISHRSKHGALLDSHLLSDVY--IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNIS 204
            +G+    + +H +L D  +  DV+     ++   +   G +    +       T+    
Sbjct: 62  YFGL---GKQRHRSLDDVKMNIDVFKNCATVLFLEESLRGVRVPTVQNMSSGGATIRTQG 118

Query: 205 LLKRDKP 211
           +     P
Sbjct: 119 ITSDPAP 125


>gi|225556956|gb|EEH05243.1| asparagine-rich protein [Ajellomyces capsulatus G186AR]
 gi|325093580|gb|EGC46890.1| asparagine-rich protein [Ajellomyces capsulatus H88]
          Length = 619

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 88/262 (33%), Gaps = 51/262 (19%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R +V  + TT    G+    D   +IE+G +  +  +  + +R   V + P     +P  
Sbjct: 13  RYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDAENCKELHRE-SVLVKPVNTPITPLC 71

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
             L  +T E ++   +F    ++F  F  E     ++ N +F    +++   R+      
Sbjct: 72  TSLTTLTWEHVRSAGTFRDAINQFDAFTQEH---LLSKNLEFSFVTLDSWDMRVQLPREA 128

Query: 116 --------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGI-------TIS 153
                     L  SR  D  +  +R         P   +DL ++C    +        I 
Sbjct: 129 RDKAVVLPPYLQHSRTFDLRTEYQRWQQHHPESLPFGPSDLANICAALEVEPMQSSAPIK 188

Query: 154 HR-SKH----------GALLDSHLLSDVYIKMMVGGSQINFG--FKTNEDRFFKEEKKTV 200
           H    H           A+ ++  L+ V   ++      +      T       + +  +
Sbjct: 189 HNLPFHLQALAPASPRRAMEEAITLARVLHGLIRKSQPPHEHPEILTRPMDARADVRAFL 248

Query: 201 PNISLLKRDKPLFTRITKEELD 222
              S +     L    T+ EL+
Sbjct: 249 AERSKVLHMSGLPHDTTQSELE 270


>gi|324514724|gb|ADY45966.1| RNA exonuclease NEF-sp [Ascaris suum]
          Length = 408

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 64/204 (31%), Gaps = 19/204 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D E     + +  +  I  V+       +      + P          K  GIT + L
Sbjct: 15  AIDCEMCVTKAGSRELTRITLVDEECNVVID----TLVKPYDEIVD-YVTKFSGITKQML 69

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                              ++A  + H+ ++D+  +           L     ID  SI 
Sbjct: 70  DPIDVRLEHVQIALSRILPKDAILVGHSLEYDLRALQ----------LSHPYCIDIASIF 119

Query: 131 RRKHPSS-RNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVY-IKMMVGGSQINFGFKT 187
                   R+ L +L   + G TI  +  H ++ D+     +  +K+  G    N     
Sbjct: 120 NLSGSEKQRSSLKTLASVFLGETIQDKRGHCSVEDAIATMQLLKMKLERGLQFGNVSLGW 179

Query: 188 NEDRFFKEEKKTVPNISL-LKRDK 210
           + D + ++   T     + +KR  
Sbjct: 180 SYDAWARKNGLTNTGARIDMKRPH 203


>gi|317402939|gb|EFV83479.1| oligoribonuclease [Achromobacter xylosoxidans C54]
          Length = 181

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 21/173 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N+ R +  D+E TGLD + +RIIE+  V             V +             
Sbjct: 1   MAVNENRLVWLDMEMTGLDPEKERIIEVAVVVTEADLTVVAEGPVLVVHQSDSLLDAMDN 60

Query: 62  LH-------GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAEL 110
            +       G+ D+      S +        F  +      +    +    D  F+ A +
Sbjct: 61  WNKSTHGKSGLIDKVRASTISEAQAEDTLLAFLAQHVPAGKSPLCGNTISQDRRFMFAYM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R+ +     +  + TL    R+                     +S+H AL D
Sbjct: 121 PRLEQFFHYRNLDVSTLKELARRWAPGVYK----------GFEKKSRHEALAD 163


>gi|163737294|ref|ZP_02144712.1| hypothetical protein RGBS107_04088 [Phaeobacter gallaeciensis
           BS107]
 gi|161389898|gb|EDQ14249.1| hypothetical protein RGBS107_04088 [Phaeobacter gallaeciensis
           BS107]
          Length = 170

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 16/171 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP----NGRKNSPEALKLHG 64
               D E + L  +    IEIG   L D     +T+   + P         S  +  +HG
Sbjct: 10  YATLDFEASSLS-EASWPIEIGVSWLKDGEL--QTWSSLIQPAPDWEISDWSTHSAAVHG 66

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I+ + L   P+  +     +D  N      ++   +F+  +++  L       +   +  
Sbjct: 67  ISIKTLFSAPTAPAAVHALFD--NLTGKVLVSDAPEFEARWLSRLLNATGHTQVPKIQ-- 122

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           D   ++ +        L+ L +    T    + H A  DS  L+  + K +
Sbjct: 123 DYHELSAKYFSG--YALDMLYESLARTP---APHRAGPDSARLAKAWHKAL 168


>gi|119898493|ref|YP_933706.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
 gi|119670906|emb|CAL94819.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 214

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 31/168 (18%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
             V + E TGLD   D ++ +GA+ +         F     P     +P           
Sbjct: 45  YTVLNTEATGLDLDKDTMLAVGAIRVDGGR-----FS----PADGYYAP----------- 84

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L  +P  ++  +    F  +     +  N  F+   +   L   + D     + +D   
Sbjct: 85  -LSGQP--AAALAGLLHFVGKG--PVVVFNTGFNRVMLERALA-THLDVAPTWQWLDLRV 138

Query: 129 IARRKHP---SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           +     P        L    + + I    R  H AL D   ++ +++ 
Sbjct: 139 LLPALFPERIDRPARLADWMRAFSIETFQR--HHALGDCWAIAQLFLA 184


>gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 879

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 31/155 (20%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +K   I FD ETTGLD+K  +I+        +        + F  P          ++ 
Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMNEN--------EAFYVPLTHNYLGVGEQI- 363

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                    K +   IF+ F           I HN K+D   I       N D   P + 
Sbjct: 364 ----SLQSAKKAIEVIFNHF----------VIGHNLKYDFKIIQN-----NFDLNLPQKY 404

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            DT+ +A  K+PS R +++ L  R     ++ + H
Sbjct: 405 ADTMILAWLKNPSLRVNMDDLALRL---FNYETLH 436


>gi|265763451|ref|ZP_06092019.1| predicted protein [Bacteroides sp. 2_1_16]
 gi|299145853|ref|ZP_07038921.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Bacteroides sp. 3_1_23]
 gi|263256059|gb|EEZ27405.1| predicted protein [Bacteroides sp. 2_1_16]
 gi|298516344|gb|EFI40225.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Bacteroides sp. 3_1_23]
          Length = 257

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 64/208 (30%), Gaps = 56/208 (26%)

Query: 1   MIRKNKMRKIVF----DIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCP----- 50
           M   N  + I+     D ET GLD ++    +I      +D  +T   +  ++ P     
Sbjct: 1   MATPNNEKPIIVAFTLDFETGGLDCQDCACTQIAIHAVRIDTFETIDRYVKYISPYNKQP 60

Query: 51  -------------------NGRKNSPEALKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQ 90
                                 K   +AL    IT + L+        + +E  DF  + 
Sbjct: 61  DKGVAKRKVLKSKFDKDDEQPMKYEEKALTYSAITMDMLESLGMDIKQVAAEVIDFIRKN 120

Query: 91  NAE--------WIAHNAKFDVGFINAELQRINKDPLD--------------PSRIIDTLS 128
                       I  N  FD+GF+   ++   +                      IDT+ 
Sbjct: 121 ILSKGRNIKPFLIGQNIGFDIGFMQQLMEYGGQMKEFAKLMRGETDFYGHFQPLYIDTIV 180

Query: 129 IAR----RKHPSSRNDLNSLCKRYGITI 152
           + +         S   L  + +++GI +
Sbjct: 181 LGQLALSHLDGMSSYKLEIMAEKFGIEL 208


>gi|311104954|ref|YP_003977807.1| oligoribonuclease [Achromobacter xylosoxidans A8]
 gi|310759643|gb|ADP15092.1| oligoribonuclease [Achromobacter xylosoxidans A8]
          Length = 181

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 21/173 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N+ R +  D+E TGLD + +RIIE+  V             V +             
Sbjct: 1   MAVNENRLVWLDMEMTGLDPEKERIIEVAVVVTEPDLTVVAEGPVLVVHQPDSLLDAMDS 60

Query: 62  LH-------GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAEL 110
            +       G+ D+      S S        F  +      +    +    D  F+ A +
Sbjct: 61  WNKSTHGKSGLIDKVKASTISESEAEDTLLAFLAQHVPAGKSPLCGNTISQDRRFMFAYM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R+ +     +  + TL    R+   +                 +S+H AL D
Sbjct: 121 PRLEQFFHYRNLDVSTLKELARRWAPAVYK----------GFEKKSRHEALAD 163


>gi|241763728|ref|ZP_04761776.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
 gi|241367033|gb|EER61418.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
          Length = 195

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 54/180 (30%), Gaps = 31/180 (17%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV---ELLDYSKTNRTFQVFLCPNGR-KNSP 57
           + K+    +  D E TGL+   DR++EI  V     L+       F +        +   
Sbjct: 15  LTKSDQNLVWLDCEMTGLEPDTDRLLEIAVVVTGPQLEPRVEGPVFAIHQADELLDRMDA 74

Query: 58  EALKLHG------------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
                HG            IT     +  +   I      +  +  A    ++   D  F
Sbjct: 75  WNKGTHGRSGLIDKVKASTIT-----EAQAEQQILDFLAQYVPKGTAPMCGNSIGQDRRF 129

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           +   + R+ +     +  + TL    ++                 +     KH AL D H
Sbjct: 130 LVRYMPRLERFFHYRNVDVSTLKELAKRWKPEAYT----------SFKKAQKHTALADVH 179


>gi|254384702|ref|ZP_05000040.1| oligoribonuclease [Streptomyces sp. Mg1]
 gi|194343585|gb|EDX24551.1| oligoribonuclease [Streptomyces sp. Mg1]
          Length = 200

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 22/168 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEALK-LH 63
           R +  D E TGL   +D +IE+ A V   + +       + + P        P+ ++ +H
Sbjct: 4   RMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGEGVDIVIRPPDTALETMPDVVRAMH 63

Query: 64  ---GITDEFLKD---KPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKD 116
              G+ DE         + + + +   +   E   A    ++   D GF+  ++  +   
Sbjct: 64  TASGLLDELAGGTTLADAEAQVLAYVREHVKEPGKAPLCGNSVGTDRGFLLRDMAALEGY 123

Query: 117 PLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                  + ++  +ARR +P            +     + + H AL D
Sbjct: 124 LHYRIVDVSSVKELARRWYPR---------AYFNSPPKNGN-HRALAD 161


>gi|229780998|ref|YP_001103540.2| oligoribonuclease [Saccharopolyspora erythraea NRRL 2338]
 gi|291007403|ref|ZP_06565376.1| oligoribonuclease [Saccharopolyspora erythraea NRRL 2338]
          Length = 221

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 62/171 (36%), Gaps = 27/171 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRK---NSPEALKLH 63
           R +  D E TGLD   D +IEI A V   D +       + +  +            ++H
Sbjct: 4   RLVWIDCEMTGLDLGKDALIEIAALVTDADLNILGEGVDIVIHADDEVLAGMPDVVREMH 63

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQRINK 115
              G+T+E  +   + +       D+      + ++A    ++   D GFI  ++  +  
Sbjct: 64  ERSGLTEEVRRSTVTLAEAEQRILDYIRRHVPDGRSAPLAGNSIATDRGFIARDMPTL-- 121

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           D     R++D  SI    RR  P          + Y         H AL D
Sbjct: 122 DAHLHYRMVDVSSIKELCRRWFP----------RIYYAQPEKGLAHRALAD 162


>gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
 gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
          Length = 940

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 47/143 (32%), Gaps = 32/143 (22%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + + + FD ETT L++    ++ I                    P               
Sbjct: 365 QQKSVCFDTETTSLNALEAELVGIAFSWNKGKG------YYLALPE-------------- 404

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                 DK     I   F  FF     E I HN K+D+  +       N D    + + D
Sbjct: 405 ------DKTEVLEILDPFKAFFEHPEIEKIGHNLKYDLKVLR------NYDIHVKAPLFD 452

Query: 126 TLSIARRKHPSSRNDLNSLCKRY 148
           T+      +P  R++++ L + Y
Sbjct: 453 TMIAHYLINPDMRHNMDILAETY 475


>gi|326518256|dbj|BAJ92491.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 321

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 51/170 (30%), Gaps = 19/170 (11%)

Query: 25  RIIEIGAVELLDY--SKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFS 81
            IIE  AV L+D    +   +F+ ++ P      +    KL GI  E +           
Sbjct: 38  EIIEFPAV-LVDGASGRIESSFRRYVRPKHHPVLTQFCRKLTGIRQEDVDGGVDLGEALW 96

Query: 82  EFWDFFNEQNA----------EWIAHNAKFDVGFINAELQRINK--DPLDPSRIIDT-LS 128
               +     A            +     +D   +     R      P    R I+  + 
Sbjct: 97  LHDAWLKAATAGAGSSRRVQLAVVTW-GDWDCRTMLEFECRFKGIEKPSYFDRWINLRVP 155

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                    R +L    +  G+    R  H  L D+   + +  ++M  G
Sbjct: 156 FQAALGGGGRVNLEEAVRAAGLDWEGR-LHCGLDDALNTARLLAEIMRRG 204


>gi|322696205|gb|EFY88001.1| RNA binding protein (Arp), putative [Metarhizium acridum CQMa 102]
          Length = 623

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 91/263 (34%), Gaps = 43/263 (16%)

Query: 3   RKNKMRKIVFDIETT----GLDSKND--RIIEIGAVELLDYSKTNRTFQ-VFLCPNGRKN 55
           + N  R +V  + TT    G+    D   +IE+G + L   S    T + V + P     
Sbjct: 8   QLNVDRYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDANSLEEITHESVLVKPVNTPI 67

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEF----WDFFNEQNAEWI-----AHNAKFDVGFI 106
           +P    L  +T E +++  +F    S F     D+   +N +++     A + +  +   
Sbjct: 68  TPLCTSLTTLTWEHVRNAGTFRDAISRFDTFATDYLTSKNLDFVFVTLDAWDLRVQLPRE 127

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGI-------TI 152
             +   +    L  SR  D  +  +R         P   + L+++C    +        I
Sbjct: 128 ARDKAVVLPPYLQHSRTFDLRTEYQRWQQHHPESLPFGPSMLSNICAALEVDPVQSSAPI 187

Query: 153 SHR-SKH----------GALLDSHLLSDVYIKMMVGGS--QINFGFKTNEDRFFKEEKKT 199
            H    H           A+ ++  L+ V   ++      Q +    T       + +  
Sbjct: 188 KHNLPFHLQALAPASPRRAMEEAITLARVLRGLIRKSQPPQDHPDVLTRPMDARADVRAF 247

Query: 200 VPNISLLKRDKPLFTRITKEELD 222
           +   S +     L    T+ EL+
Sbjct: 248 LSERSKVLHMSGLPHDTTQSELE 270


>gi|241950163|ref|XP_002417804.1| RNA exonuclease, putative [Candida dubliniensis CD36]
 gi|223641142|emb|CAX45519.1| RNA exonuclease, putative [Candida dubliniensis CD36]
          Length = 276

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 53/172 (30%), Gaps = 17/172 (9%)

Query: 3   RKNKMRKIVFDIETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + +  + +  D E  G+  D +   +  I  +    +   +     ++ P  R       
Sbjct: 101 KLDPGKYVALDCEFVGIGKDGEESALARISIINYYGFVLLD----TYVRPKERVTDWR-T 155

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            + GI    ++D   F +   +  +  N  N   + H    D+  +          P   
Sbjct: 156 WVSGIQSHHMQDAIDFKTAQLKTIELIN--NKILVGHALSNDLDMLFLSH------PKSM 207

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS-HRSKHGALLDSHLLSDVY 171
            R        R         L  L K + I +     +H ++ D+     ++
Sbjct: 208 IRDTCQFPKFREIAGGKSPSLKKLIKHF-IQVDIQIGQHSSVEDARATMLLF 258


>gi|289642810|ref|ZP_06474947.1| Exonuclease RNase T and DNA polymerase III [Frankia symbiont of
           Datisca glomerata]
 gi|289507379|gb|EFD28341.1| Exonuclease RNase T and DNA polymerase III [Frankia symbiont of
           Datisca glomerata]
          Length = 270

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 25/170 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFL-CPNGRK--NSPEALKLH 63
           R +  D E TGLD+ +D ++E+   V   + +       V +  P            ++H
Sbjct: 3   RLVWIDCEMTGLDAASDLLLEVACLVTDSELNILGGGVDVVVSAPETALAGMDAVVQQMH 62

Query: 64  ---GITDEFLKD-----KPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRIN 114
              G+T E ++        +   +     D   +   A    ++   D  F+   +  ++
Sbjct: 63  ATSGLT-EAVRASTLTVADAERQVLDYVRDQIPDAGKAPLCGNSIATDRNFLARYMPALD 121

Query: 115 KDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                    + T+  +ARR +P          + Y    + R  H AL D
Sbjct: 122 SYLHYRMVDVSTVKELARRWYP----------RAYYAAPAKRGGHRALAD 161


>gi|289428666|ref|ZP_06430349.1| exonuclease [Propionibacterium acnes J165]
 gi|289158064|gb|EFD06284.1| exonuclease [Propionibacterium acnes J165]
          Length = 223

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 22/170 (12%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSP---EALK 61
           K   +  D E TGLD  +D +IE+ A+              V + P  +           
Sbjct: 20  KDMLVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRN 79

Query: 62  LH---GI---TDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRIN 114
           +H   G+    D+ L    +   +      +  +   A    +    D  F+  ++ ++ 
Sbjct: 80  MHTTSGLLAELDKGLTMAQAQDQVLDYIRTYVPQAGKAPLAGNTIGTDRSFLAKDMPKLE 139

Query: 115 KDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 +  + ++  +ARR +P          + +G +   +  H AL D
Sbjct: 140 SYVHYRNVDVSSIKELARRWYP----------RAFGHSPEKQGNHRALAD 179


>gi|284049844|ref|ZP_06380054.1| Exonuclease RNase T and DNA polymerase III [Arthrospira platensis
           str. Paraca]
 gi|291569863|dbj|BAI92135.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 813

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 58/179 (32%), Gaps = 31/179 (17%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            K +   IV D E          I++  A+     +     F    C N +         
Sbjct: 1   MKPQTNFIVIDTE-------GQPILKAMAIVDHQGNLIYEAFDQKYCQNPQLIDQ----- 48

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                          +I +EF      Q    I H A+ D+  +    + +   P   S 
Sbjct: 49  ----------SKPLKTIVNEFLAIAGSQ--TIICHYARHDIEVLRNTFRAVGVQPPRLSF 96

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRS-----KHGALLDSHLLSDVYIKMM 175
              +  +A+R  P    N L+++ ++  ++    +      H A  D+     +Y +M+
Sbjct: 97  Q-CSFELAQRYLPQLGSNSLDTISQQLNLSPDDHTNNRDSLHRAKHDALFTYQLYRRMI 154


>gi|94311510|ref|YP_584720.1| oligoribonuclease [Cupriavidus metallidurans CH34]
 gi|93355362|gb|ABF09451.1| oligoribonuclease [Cupriavidus metallidurans CH34]
          Length = 205

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 62/181 (34%), Gaps = 41/181 (22%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEAL-- 60
           K++   +  D+E TGL    DRIIE+  V       T+    +    P    + P+A+  
Sbjct: 10  KSENNLVWLDMEMTGLQPDTDRIIEVAVV------VTDSELNILAEGPVLVIHQPDAVLD 63

Query: 61  -------KLHGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
                    HG +          L +  + + + +    +     +    ++   D  F+
Sbjct: 64  AMDNWNKGTHGRSGLIEKVKASTLTEAQAEAELLAFLKRWVPANKSPMCGNSICQDRRFM 123

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY----GITISHRSKHGALL 162
              + ++  +     R +D             + L  LCKR+        + R  H AL 
Sbjct: 124 ARYMPKL--ESFFHYRNLDV------------STLKELCKRWEPAIHKGFTKRQLHTALA 169

Query: 163 D 163
           D
Sbjct: 170 D 170


>gi|302534542|ref|ZP_07286884.1| oligoribonuclease [Streptomyces sp. C]
 gi|302443437|gb|EFL15253.1| oligoribonuclease [Streptomyces sp. C]
          Length = 200

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 64/168 (38%), Gaps = 22/168 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH 63
           R +  D E TGL   +D +IE+ A V   + +       + + P        P+ + ++H
Sbjct: 4   RMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPDVVREMH 63

Query: 64  ---GITDEFLKD---KPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKD 116
              G+ DE         + + + +   +   E + A    ++   D GF++ ++  +   
Sbjct: 64  TASGLLDELAAGTTLADAEAQVLAYVREHVKEPRKAPLCGNSVGTDRGFLSRDMPALESH 123

Query: 117 PLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                  + ++  +ARR +P            +     + + H AL D
Sbjct: 124 LHYRIVDVSSVKELARRWYPR---------AYFNSPPKNGN-HRALAD 161


>gi|254419026|ref|ZP_05032750.1| exonuclease family [Brevundimonas sp. BAL3]
 gi|196185203|gb|EDX80179.1| exonuclease family [Brevundimonas sp. BAL3]
          Length = 476

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 11/112 (9%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV------FLCPNGRKNSPEAL 60
           M  + +D ETTGL    D+I++  A+           F++       + P+ +      L
Sbjct: 1   MGFVFYDTETTGLSKGFDQIVQFAAIHTDGDLNELDRFELRCRLQPHVVPHPKAMLANRL 60

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNA-KFDVGFINAEL 110
            +  +TD  L   PS   +  E     +      +I +N+ +FD   +    
Sbjct: 61  SIERLTDLSL---PSHYDMVREIRRRLSGWGRGIFIGYNSIRFDEEMLRHAF 109


>gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4]
 gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4]
          Length = 949

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 50/152 (32%), Gaps = 35/152 (23%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            + + FD ETTGLD     ++ +              + V L P                
Sbjct: 376 QKSVCFDTETTGLDMFTSDLVGMSFCFAE-----GEAYYVSL-PE--------------- 414

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                DK     +  EF  FF     E I  N KFD+  +      +           DT
Sbjct: 415 -----DKTESKEVLREFKAFFENDRIEKIGQNMKFDLLMLWQYGIELKGKLF------DT 463

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
           +       P  R+ ++ L + Y   +++R+ H
Sbjct: 464 MIAHYLVQPELRHGMDYLAEIY---LNYRTIH 492


>gi|293604208|ref|ZP_06686616.1| oligoribonuclease [Achromobacter piechaudii ATCC 43553]
 gi|292817433|gb|EFF76506.1| oligoribonuclease [Achromobacter piechaudii ATCC 43553]
          Length = 181

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 21/173 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N+ R +  D+E TGLD + +RIIE+  V             V +             
Sbjct: 1   MAVNENRLVWLDMEMTGLDPEKERIIEVAVVVTEPDLTVVAEGPVLVIHQPDTLLDAMDN 60

Query: 62  LH-------GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAEL 110
            +       G+ D+      S S        F  +      +    +    D  F+ A +
Sbjct: 61  WNKSTHGKSGLIDKVRASTVSESQAEDTLLAFLAQHVPAGKSPLCGNTISQDRRFMFAYM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R+ +     +  + TL    R+   +                 +S+H AL D
Sbjct: 121 PRLEQFFHYRNLDVSTLKELARRWAPAVYK----------GFEKKSRHEALAD 163


>gi|325954851|ref|YP_004238511.1| DNA polymerase I [Weeksella virosa DSM 16922]
 gi|323437469|gb|ADX67933.1| DNA polymerase I [Weeksella virosa DSM 16922]
          Length = 941

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 35/150 (23%)

Query: 2   IRKNKMRKI---VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           +  +KM+ +    FD ETT LD    +++ I                 +  P        
Sbjct: 361 LLIDKMKTLDSFAFDTETTSLDPLEAKLVGISFSWEKGKG--------YYLPF------- 405

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                    E   D     +I  EF + F+    E I HN K+D+  +     RI+ +  
Sbjct: 406 --------PEDFDDA---KNIILEFAELFSNPAIEKIGHNIKYDLKVLYKYGIRIDGE-- 452

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                 DT+      +P  R++L+ L + Y
Sbjct: 453 ----NFDTMIAHYLLNPDMRHNLDVLSETY 478


>gi|302529267|ref|ZP_07281609.1| oligoribonuclease [Streptomyces sp. AA4]
 gi|302438162|gb|EFL09978.1| oligoribonuclease [Streptomyces sp. AA4]
          Length = 202

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 23/165 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLH------G 64
            D E TGLD   D +IEI A V   D +       + +  +  K       +H      G
Sbjct: 8   IDCEMTGLDLGKDALIEIAALVTDADLNVLGEGVDIVIHADDAKLDGMPQVVHDMHAKSG 67

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +T+E      + +       ++  E      +A    ++   D GFI  ++  +++    
Sbjct: 68  LTEEVRASTTTLAEAEQRVLEYIREWVPDPASAPLAGNSIATDRGFIARDMPELDRHLHY 127

Query: 120 PSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
               + ++  + RR +P          + Y         H AL D
Sbjct: 128 RMVDVSSVKELVRRWYP----------RIYYAKPEKGLAHRALAD 162


>gi|239979599|ref|ZP_04702123.1| oligoribonuclease [Streptomyces albus J1074]
 gi|291451465|ref|ZP_06590855.1| oligoribonuclease [Streptomyces albus J1074]
 gi|291354414|gb|EFE81316.1| oligoribonuclease [Streptomyces albus J1074]
          Length = 200

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 22/168 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH 63
           R +  D E TGL   +D +IE+ A V   + +       + + P        PE + K+H
Sbjct: 4   RMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGDGVDIVIRPPDEALETMPEVVRKMH 63

Query: 64  ---GITDEFLKD---KPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKD 116
              G+  E  +      + + + +   +   E   A    ++   D  F+  ++  +   
Sbjct: 64  TSSGLLAELAEGTTLADAEAQVLAYVREHVKEPGKAPLCGNSVGTDRNFLARDMAALEGY 123

Query: 117 PLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                  + ++  +ARR +P          + Y  +      H AL D
Sbjct: 124 LHYRIVDVSSVKELARRWYP----------RAYFNSPDKNGNHRALAD 161


>gi|317507722|ref|ZP_07965427.1| exonuclease [Segniliparus rugosus ATCC BAA-974]
 gi|316253975|gb|EFV13340.1| exonuclease [Segniliparus rugosus ATCC BAA-974]
          Length = 202

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 27/173 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLC---PNGRKNSPEALK 61
           K R +  D E TGL   +D++IEI A V   D +  +    + +        +       
Sbjct: 5   KDRLLWIDCEMTGLRPGHDQLIEIAALVTDGDLNILDEGIDLVIHASEDKLAQMDEYVTN 64

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRI 113
           +H   G+TD       S +   ++   +  E     + A    ++   D  F+  ++  +
Sbjct: 65  MHASSGLTDAVRAATLSLAEAEAKVLAYVKERFPAPRTAILAGNSIATDRSFLAKDMPEL 124

Query: 114 NKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             D     R++D  +I   +RR +P            +         H AL D
Sbjct: 125 --DAWLHYRMVDVSTIKELSRRWYPR---------IYFNQP-EKGLAHRALAD 165


>gi|256371657|ref|YP_003109481.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008241|gb|ACU53808.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 188

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 55/170 (32%), Gaps = 31/170 (18%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP----NGRKNSPEALKLH---GI 65
           D+E TGLD +   I+EI A+   D  +T       +            P  +++H    +
Sbjct: 6   DLEMTGLDPERCVILEIAAIVTDDELETVAELGPLVLHATDEELAVMEPVVVQMHSANHL 65

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            ++  +   +     S    F               ++   D  F+   + ++  + L  
Sbjct: 66  LEDVRRASLTIDEAESTVLAFLKAHLPDPHQVPLCGNSIGTDRRFLARHMPKV--EALLH 123

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKR-YGITISH----RSKHGALLDSH 165
            R ID             + L  L +R Y   I H       H AL D  
Sbjct: 124 YRSIDV------------SSLKELARRWYPEVIEHMPQKNPAHRALDDVR 161


>gi|329964213|ref|ZP_08301330.1| hypothetical protein HMPREF9446_02929 [Bacteroides fluxus YIT
           12057]
 gi|328525609|gb|EGF52649.1| hypothetical protein HMPREF9446_02929 [Bacteroides fluxus YIT
           12057]
          Length = 197

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKL 62
           +NK   I  D ET      +   I +  V+  + +    T   ++ P    K       +
Sbjct: 84  ENKFDFIAIDFETANNSRLSACAIGLCFVK--NDTIVYSTKH-YINPPKSEKFLKTHTSI 140

Query: 63  HGITDEFLKDKPSFSSIF-SEFWDFFNEQNAEWIAHNAKFDVGFINA 108
           HGI+ E ++   +F  ++  E   + +      I HNA  D+  +  
Sbjct: 141 HGISYEDVEFSLNFQELWEDELSKYLSSN--LLIFHNASMDLSVLKN 185


>gi|226503946|ref|NP_001140253.1| hypothetical protein LOC100272294 [Zea mays]
 gi|194698700|gb|ACF83434.1| unknown [Zea mays]
 gi|223944519|gb|ACN26343.1| unknown [Zea mays]
          Length = 370

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 8/126 (6%)

Query: 91  NAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH--PSSRNDLNSLCKR 147
              W  HN   FD   I      I + P  P  +IDTL +  +     +    L SL   
Sbjct: 7   GRVWAGHNIVHFDSMIIMDAFAEIGRPPPQPKAMIDTLPLLTQCFGPRAGDMKLASLANY 66

Query: 148 YGITISHRSKHGALLDSHLLSDVY--IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL 205
           +G+    + +H +L D  +  DV+     ++   +   G +    +       T+    +
Sbjct: 67  FGL---GKQRHRSLDDVKMNIDVFKNCATVLFLEESLRGVRVPTVQNMSSGGATIRTQGI 123

Query: 206 LKRDKP 211
                P
Sbjct: 124 TSDPAP 129


>gi|21221244|ref|NP_627023.1| oligoribonuclease [Streptomyces coelicolor A3(2)]
 gi|289771467|ref|ZP_06530845.1| oligoribonuclease [Streptomyces lividans TK24]
 gi|11133768|sp|P57666|ORN_STRCO RecName: Full=Oligoribonuclease
 gi|9588056|dbj|BAB03461.1| oligoribonuclease [Streptomyces coelicolor A3(2)]
 gi|10303264|emb|CAC10102.1| oligoribonuclease [Streptomyces coelicolor A3(2)]
 gi|289701666|gb|EFD69095.1| oligoribonuclease [Streptomyces lividans TK24]
          Length = 200

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 26/170 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH 63
           R +  D E TGL   +D +IE+ A V   + +       + + P  R     PE + ++H
Sbjct: 4   RMVWIDCEMTGLSLSDDALIEVAALVTDSELNILGEGVDIVIRPPERALETMPEVVREMH 63

Query: 64  ---GITDEF-----LKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRIN 114
              G+  E      L D    + + +   +   E   A    ++   D GF+  ++  + 
Sbjct: 64  TASGLLAELDGGTTLADA--EAQVLAYVREHVKEPGKAPLCGNSVGTDRGFLLRDMATLE 121

Query: 115 KDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                    + ++  +ARR +P          + Y  +      H AL D
Sbjct: 122 GYLHYRIVDVSSIKELARRWYP----------RAYFNSPEKNGNHRALAD 161


>gi|290998255|ref|XP_002681696.1| predicted protein [Naegleria gruberi]
 gi|284095321|gb|EFC48952.1| predicted protein [Naegleria gruberi]
          Length = 185

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 56/170 (32%), Gaps = 22/170 (12%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG----RKNSPEALK 61
           +   +  D+E TGLD  +D I+EI  +               +           +    +
Sbjct: 7   QDPIVWVDMEMTGLDIDSDHILEIAVIITDGNLNIIAQLDSLIVHQSDSVLDNMNDWCKQ 66

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRI 113
            H   G+T    K   S   +     DF       E+ A    ++   D  F+  E++R+
Sbjct: 67  HHGDSGLTAAVRKSSFSIQQVEDTVLDFVKHYVASERLAPLAGNSVYCDRLFMKKEMKRL 126

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             D     RIID  SI       S   L  + K           H AL D
Sbjct: 127 --DEYLHYRIIDVSSIKELARRWSPETLTKVVK--------TGAHRALDD 166


>gi|331212497|ref|XP_003307518.1| RNA exonuclease 4 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309297921|gb|EFP74512.1| RNA exonuclease 4 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 238

 Score = 52.9 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 73/217 (33%), Gaps = 20/217 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + +  +   +  D E  G+   N  +  +  V ++D+         ++ P  +  +    
Sbjct: 42  LTKAQQKEYVAIDCEMVGVGP-NGSVSALARVSIVDFHGNV-LLDQYVKPT-QPVTQYRT 98

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            + GI  + L+    F ++        +++    + H    D+  +  +           
Sbjct: 99  WVSGIRAKHLRHASGFKAVTKHVSRLIDKK--ILVGHAIHHDLRALAIDHPPELIRDTST 156

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            + + TL+   R  PS +N L  L     I    +  H ++ D+     +Y         
Sbjct: 157 YQPLWTLANTDRS-PSLKN-LAKLVLDLKI---QKRSHCSVDDAKATMAIYRT------- 204

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
                +  ED   K  K+    +S  ++   +  + +
Sbjct: 205 ---QQEDWEDELLKSRKQQADLLSPDQQPDLIPKQPS 238


>gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
 gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
          Length = 662

 Score = 52.9 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 45/147 (30%), Gaps = 39/147 (26%)

Query: 10  IVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  DIETTGLD     I  I+I A                  PN      E   +     
Sbjct: 69  VGLDIETTGLDPHTSEISLIQIAA------------------PNRPVILIEFRSITH--- 107

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                             F        + HN  F++ F+    + +  +P+  +  IDT+
Sbjct: 108 ------------KESLRRFIEHHKIPKVGHNLAFEIQFLT---KHLGINPVKTA-WIDTM 151

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISH 154
            +A+         L    K   + I +
Sbjct: 152 LMAQLLAAGLPPTLEDDIKAGVLPIPN 178


>gi|326331153|ref|ZP_08197449.1| oligoribonuclease [Nocardioidaceae bacterium Broad-1]
 gi|325951048|gb|EGD43092.1| oligoribonuclease [Nocardioidaceae bacterium Broad-1]
          Length = 222

 Score = 52.9 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 56/178 (31%), Gaps = 42/178 (23%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D E TGL  +ND +IE+ A V   D +       + + P                
Sbjct: 11  RLVWIDCEMTGLSLENDALIEVAALVTDFDLNVLGDGVDIIIKPPAEALEQM-------- 62

Query: 67  DEFLKD-----------------KPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINA 108
           D+F++D                 + +   + +  W+    +       +    D  F+  
Sbjct: 63  DDFVRDMHTKSGLLVELENGVTMREAEEQVLAYVWEHCGKDSRPPLGGNTVATDRNFLAR 122

Query: 109 ELQRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++  +        R +D  SI   +RR  P +                 R  H AL D
Sbjct: 123 DMPELEG--FLHYRNVDVSSIKELSRRWFPRAYFS----------APPKRGNHRALAD 168


>gi|291397755|ref|XP_002715417.1| PREDICTED: interferon stimulated exonuclease gene 20kDa-like 2
           [Oryctolagus cuniculus]
          Length = 343

 Score = 52.9 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 63/192 (32%), Gaps = 15/192 (7%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +K   + +  D E  G   K   +  +    +++Y   +  +  ++ P  R       + 
Sbjct: 163 QKAPSKMVAIDCEMVGTGPKGH-VSSLARCSIVNYDG-DVLYDEYILPPCRIVDYR-TRW 219

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI  + +     F +  S+       +    + H    D   +     +     L    
Sbjct: 220 SGIRKQHMLHATPFKTARSQILKILAGK--IVVGHAIHNDFKALQYFHPK----SLTRDT 273

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGG 178
               L   +   P +    L  L K+     I +  +S H ++ D+    ++Y K++   
Sbjct: 274 SHIPLLNRKADFPENATMSLKRLTKKLLDRDIQV-GKSGHSSVEDAQATMELY-KLIEVE 331

Query: 179 SQINFGFKTNED 190
            + +      +D
Sbjct: 332 WEQHLAQNPPKD 343


>gi|307182703|gb|EFN69827.1| RNA exonuclease 4 [Camponotus floridanus]
          Length = 261

 Score = 52.9 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 55/172 (31%), Gaps = 16/172 (9%)

Query: 3   RKNKMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            K   ++I  D E  G+ D     +  I  V           +  ++ P  +        
Sbjct: 91  NKTMTKQIAIDCEMVGIGDGTESMLARISIVNKHGDCI----YDKYVKPREKVVDYR-TA 145

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           + GI  E L+D   F+ +  E  D    +    + H  K D+  +     R         
Sbjct: 146 VSGIRPEQLRDGEDFNIVQKEVADILKGR--LLVGHALKHDLNVLFLSHPR------RYW 197

Query: 122 RIIDTLSIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYI 172
           R        R+    +   L  L  +  G  I    +H ++ D+     +Y+
Sbjct: 198 RDTSRYKPFRQISKGNTPSLKKLAHELLGREI-QIGEHSSVEDARAAMQLYM 248


>gi|227488247|ref|ZP_03918563.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091817|gb|EEI27129.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 203

 Score = 52.9 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 24/175 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLC---PNGRKNS 56
           M  K+  R +  D+E TGLD K   I+E       +          + +       ++  
Sbjct: 1   MSNKDN-RIVWIDLEMTGLDPKRHVIVEAAVHITDNDLTILGDGLDLVIHATEDELKEMD 59

Query: 57  PEALKLH---GITDEFLKDKP-SFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAE 109
               K+H   G+ DE +++ P S +    +   + +E          ++   D  FI   
Sbjct: 60  EVVTKMHTSNGLIDE-IRESPLSCAEAEKQIIAYIDEHCDGHPPLAGNSIATDRSFIREY 118

Query: 110 LQRINKDPLDPSRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  +++        + +L + AR+  P+           Y         H AL D
Sbjct: 119 MPDLDQRLHYRMIDVSSLKVLARKWMPT----------IYSHQPEKGLAHRALAD 163


>gi|62255581|gb|AAX78201.1| interferon-stimulated protein [Chlorocebus aethiops]
          Length = 181

 Score = 52.9 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 15/167 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E  G+  + +  +   ++  +  +     +  F+ P G        ++ G+T + 
Sbjct: 8   VAMDCEMVGMGPRRESGLARCSLVNVHGAVL---YDKFIQPEGEITDYR-TRVSGVTPQH 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +     F+    E       +    + H+ K D   +  ++ R            D L  
Sbjct: 64  MVGATPFAVARLEILQLL--KGKLVVGHDLKHDFQALKEDMSRYTI----YDTSTDMLLW 117

Query: 130 ARRKHPSSRN-DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYI 172
              K    R   L  LC+R     I  S    H ++ D+    ++Y 
Sbjct: 118 REAKLDHCRRVSLRVLCERLLHKSIQNSLLG-HSSVEDAKATMELYQ 163


>gi|331245678|ref|XP_003335475.1| hypothetical protein PGTG_17328 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309314465|gb|EFP91056.1| hypothetical protein PGTG_17328 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 200

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 26/168 (15%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS---PEALKLH---G 64
            D E TGLD   D+IIEI  +    D  + +   Q  +  +        P     H   G
Sbjct: 18  IDCEMTGLDVTVDQIIEIACIITDKDLKELDDGIQFVIHVDQSVLDRMGPWCQNQHGKSG 77

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKF-DVGFINAELQRINKDPL 118
           +++  L+   + + +  +   +        +    +A N+ + D  F++ +L  +     
Sbjct: 78  LSEACLQSPHTLTEVDQKIRRYLELHLPGLKGKAVLAGNSVYADKMFLDKDLPLV--SEY 135

Query: 119 DPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              R++D  SI   ARR  P     L  L K   I     SKH AL D
Sbjct: 136 LHYRLVDVSSIKELARRWEP----KLVELAKPASIP----SKHRALDD 175


>gi|297625994|ref|YP_003687757.1| Oligoribonuclease [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921759|emb|CBL56317.1| Oligoribonuclease [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 223

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 27/167 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNS---PEALKLH---G 64
            D E TGLD  ND +IE+  +              V + P+            ++H   G
Sbjct: 5   IDCEMTGLDLANDELIEVACLVTDGELNVQGDGIDVLVQPSKHALDHMGEFVTEMHTKSG 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +  E    K +      +   +       E+ A    +    D  F+  ++  +  +   
Sbjct: 65  LLAELKNVKTTMREAEEQVLAYIKKYVPTERKAPLAGNTIGTDRTFLAKDMPEL--EAWV 122

Query: 120 PSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             R +D  SI   A+R +P +          Y         H AL D
Sbjct: 123 HYRNVDVSSIKELAKRWYPRT----------YYQAPDKHGNHRALAD 159


>gi|149921330|ref|ZP_01909785.1| hypothetical protein PPSIR1_26523 [Plesiocystis pacifica SIR-1]
 gi|149817877|gb|EDM77340.1| hypothetical protein PPSIR1_26523 [Plesiocystis pacifica SIR-1]
          Length = 210

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 21/155 (13%)

Query: 37  YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQN---- 91
             +    F   L P       EAL ++G+  E L +      ++ ++  ++  E+     
Sbjct: 51  REQLADAFYAELRPISPNFEAEALAVNGLDREGLIEHGADPGAVMADASEWIVERCEALG 110

Query: 92  ---AEWIAHNAKFDVGFINAELQRINKD-PLDPSRIID--TLSIARRKHP---SSRNDLN 142
                 + +   FD  ++     R   + P   SR  D  T +      P   S R  L 
Sbjct: 111 GGEPVLVGYPLGFDWSWLRWYFIRFGGESPFGHSRAFDIKTAAALDLGWPVSGSGRARLP 170

Query: 143 SLCKRYGITISHRSK-HGALLDSHLLSDVYIKMMV 176
           +  +        R+  H A+ D+   + ++ K+M 
Sbjct: 171 AALQ------PERAHSHHAVDDAVAQAQIFSKLMT 199


>gi|322691183|ref|YP_004220753.1| hypothetical protein BLLJ_0994 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456039|dbj|BAJ66661.1| hypothetical protein BLLJ_0994 [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 185

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 60/184 (32%), Gaps = 30/184 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D ETTGLD + D I+EIG +    D    +  F   +   G+  S     +HG  
Sbjct: 12  RLLWVDTETTGLDPRKDPILEIGMIATGPDLKPVDDGFHTTVHWEGKP-SEFIQGMHG-P 69

Query: 67  DEFLKD-----KPSFSSIFSEFWDFFNEQNAEWI-----AHNAKFDVGFINAELQRINKD 116
           +  L +      P   +      D+      + +         +FD   I++ +  +   
Sbjct: 70  NGLLAECAHPSAPHMFAAALSARDYVARHLGQGVRLLPAGSTVRFDRDMIDSWMPGVLDG 129

Query: 117 PLDPSRIIDTLSIARRKH-----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
               S  I  +  A R       P                  HR  H  L D+   +  Y
Sbjct: 130 CSHRSLDISAVCEAVRMWNPAILPDMEPS-----------TDHRVMH-CLADTLRYARAY 177

Query: 172 IKMM 175
             ++
Sbjct: 178 RGLI 181


>gi|258652005|ref|YP_003201161.1| exonuclease RNase T and DNA polymerase III [Nakamurella
           multipartita DSM 44233]
 gi|258555230|gb|ACV78172.1| Exonuclease RNase T and DNA polymerase III [Nakamurella
           multipartita DSM 44233]
          Length = 212

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 63/171 (36%), Gaps = 27/171 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLH--- 63
           R +  D E TGLD   D++IEI A V   D +       V +  +    +     +    
Sbjct: 4   RLVWVDCEMTGLDLGTDKLIEIAALVTDSDLNILGEGVDVVIHADDAALAAMPQVVTEMH 63

Query: 64  ---GITD----EFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINK 115
              G+TD      +    +   +     +F  E ++A    ++   D GFI  ++  +  
Sbjct: 64  AKSGLTDRVRESTVTMAQAEQLVLDYIREFVPEPKSAPLAGNSIATDRGFIARDMPLL-- 121

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           D     R++D  SI    RR +P            +G   +    H AL D
Sbjct: 122 DDYLHYRMVDVSSIKELCRRWYPR---------IYFGQP-AKVMSHRALTD 162


>gi|239933900|ref|ZP_04690853.1| hypothetical protein SghaA1_37212 [Streptomyces ghanaensis ATCC
           14672]
 gi|291442316|ref|ZP_06581706.1| exonuclease [Streptomyces ghanaensis ATCC 14672]
 gi|291345211|gb|EFE72167.1| exonuclease [Streptomyces ghanaensis ATCC 14672]
          Length = 187

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 19/180 (10%)

Query: 11  VFDIETT---GLDSKN--DRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           V D+E T   G         IIEIG   V+L    +  +  ++ + P   + SP   +L 
Sbjct: 10  VVDVEATCWEGQPPPGQVSEIIEIGLTVVDLRAGERLAKH-RLLVRPARSEVSPFCTELT 68

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G+T   +     F+          +       A    +D      + +          R 
Sbjct: 69  GLTQADVDQGLPFTEACRALAAK-HHTGLIPWASWGDYDRNQFTRQCRHTGTQYPFNHRH 127

Query: 124 ID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            +     T S   R+ P     L       G+ +  R  H    D+  ++ + + ++  G
Sbjct: 128 TNVKAAFTTSYGLRRRPGMAQALTV----AGLPLEGR-HHRGDDDAWNIAALVLDLVGRG 182


>gi|227542846|ref|ZP_03972895.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181351|gb|EEI62323.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 203

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 24/175 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLC---PNGRKNS 56
           M  K+  R +  D+E TGLD K   I+E       +          + +       ++  
Sbjct: 1   MSNKDN-RIVWIDLEMTGLDPKRHVIVEAAVHITDNDLTILGDGLDLVIHATEDELKEMD 59

Query: 57  PEALKLH---GITDEFLKDKP-SFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAE 109
               K+H   G+ DE +++ P S +    +   + +E          ++   D  FI   
Sbjct: 60  EVVTKMHTSNGLIDE-IRESPLSCAEAEKQIIAYIDEHCDGHPPLAGNSIATDRSFIREY 118

Query: 110 LQRINKDPLDPSRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  +++        + +L + AR+  P+           Y         H AL D
Sbjct: 119 MPDLDQRLHYRMIDVSSLKVLARKWMPT----------IYSHQPEKGLAHRALAD 163


>gi|217072104|gb|ACJ84412.1| unknown [Medicago truncatula]
          Length = 366

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 59/195 (30%), Gaps = 27/195 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R I  D E  G  S     +E+ A   L     N  F  ++ P     +     + G+T+
Sbjct: 137 RAIAMDCEMVGGGSDGS--LELCARVCLVDEDENLIFHTYVKPQI-PVTNYRYDITGLTE 193

Query: 68  EFLKDKPSFSSIFSEFWDFF------------NEQNAEWIAHNAKFDVGFINAELQRINK 115
           E L+D      +  +                   +    + H+   D+  +         
Sbjct: 194 EHLQDGMPLKEVREKILQILYNGESIGKVRLDGGKARLLVGHDLAHDLDCLGMSY----- 248

Query: 116 DPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIK 173
                  + DT         +     L  L + Y G  I   + H    D   +  +Y +
Sbjct: 249 ---PDHLMRDTAKYRPLMKTNLVCYSLKYLTRTYLGYDIQTGT-HNPYEDCISVMRLYKR 304

Query: 174 MMVGGSQINFGFKTN 188
           +  G S    G++T 
Sbjct: 305 I-RGQSHKEKGYRTL 318


>gi|222622820|gb|EEE56952.1| hypothetical protein OsJ_06659 [Oryza sativa Japonica Group]
          Length = 348

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 24/171 (14%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNS--PEALK 61
           +M  +  D+E TGLD   DRI+EI  +   D   T +     + +           E  K
Sbjct: 166 QMPLVWIDLEMTGLDVAKDRILEIACIIT-DGKLTKQIEGPDLVINQKKDLLDNMDEWCK 224

Query: 62  LH----GITDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKF-DVGFINAELQRI 113
            H    G+T   L+   S     ++  DF  +    +   IA N+ + D+ F+   + ++
Sbjct: 225 THHAASGLTQRVLQSTISEHDAETQVLDFVKKHVGSSPPLIAGNSVYVDLLFLKNYMPQL 284

Query: 114 NKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                     + + +++  R +P  R            T     KH A+ D
Sbjct: 285 AAIFSHVIVDVSSIMALCIRWYPKERKR----------TPQKGKKHRAMND 325


>gi|326508370|dbj|BAJ99452.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 343

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 59/194 (30%), Gaps = 32/194 (16%)

Query: 25  RIIEIGAVELLDY--SKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFS 81
            IIE  AV L+D    +    F+ ++ P      +    +L GI  E +           
Sbjct: 38  EIIEFPAV-LVDGATGRIESAFRRYVRPKHHPVLTQFCRELTGIRQEDVDGGVDLGEALW 96

Query: 82  EFWDFFNEQNAEWIAHNAK-----------FDVGFINAELQRINKDPLDPSRIIDTLSIA 130
               +     A   A N +           +D   +     R     ++     D     
Sbjct: 97  LHDAWLKAATAG--AGNRRSGRLAVVTWGDWDCRTMLEFECRFKG--IEKPSYFDQWINL 152

Query: 131 RRKHP-----SSRNDLNSLCKRYGITISHRSKH----GALLDSHLLSDVY---IKMMVGG 178
           R           R +L    +  G+    R  H     AL  + LL+++    +KM + G
Sbjct: 153 RVPFQVALGGGGRVNLQEAVRAAGLDWEGR-LHCGLDDALNTARLLAEIMRRGVKMTITG 211

Query: 179 SQINFGFKTNEDRF 192
           S +       E + 
Sbjct: 212 SLVPLPLFEQEQQP 225


>gi|169626426|ref|XP_001806613.1| hypothetical protein SNOG_16500 [Phaeosphaeria nodorum SN15]
 gi|111054985|gb|EAT76105.1| hypothetical protein SNOG_16500 [Phaeosphaeria nodorum SN15]
          Length = 356

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 56/168 (33%), Gaps = 12/168 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGIT 66
           + +  D E  G+  + +R   +  V L+++   ++ +  ++  P   + +     + GI 
Sbjct: 149 KYVAVDCEMVGIGPEPNRDSALARVSLVNFHG-HQVYDSYVQIPRKIEVTDYRTAVSGIE 207

Query: 67  DEFLKD--KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
              L+      F  +  +       +    + H  K D+  +  + +             
Sbjct: 208 PRHLRPDVARPFDEVREDLKTLLTGR--ILVGHAVKNDLDVLILKHEPKFIRDTSKFSKF 265

Query: 125 DTLSIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVY 171
             L+      P     L  L  K  G+ I     H ++ D+     +Y
Sbjct: 266 RQLA----LRPGHTPGLKLLADKLLGVQI-QVGAHSSVEDARATMALY 308


>gi|73985877|ref|XP_541894.2| PREDICTED: similar to three prime repair exonuclease 1 isoform b
           [Canis familiaris]
          Length = 314

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 69/196 (35%), Gaps = 38/196 (19%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAV------------------ELLDYSKTNRTFQVFL 48
              I  D+E TGL S   ++ E+  +                   +    +      + +
Sbjct: 12  QTLIFLDLEATGLPSSQPKVTELCLLAVHRCALESSPTPQGQRPTVPPPPRVVDKLSLCV 71

Query: 49  CPNGRKNSPEALKLHGITDEFLK--DKPSF-SSIFSEFWDFFNEQNAE--WIAHN-AKFD 102
            P G+  SPEA K+ G++   L    +  F + + +    F   Q      +AHN  ++D
Sbjct: 72  AP-GKACSPEASKITGLSTAVLAAHGRQRFDADLANLLQAFLRRQPQPWCLVAHNGDRYD 130

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGIT 151
              + AEL  +     LD +  +D+++  +            P     L S+  R YG  
Sbjct: 131 FPLLQAELAVLGLASILDGAFCVDSIAALKALEQAASPSEHGPRKSYSLGSIYTRLYGQA 190

Query: 152 ISHRSKHGALLDSHLL 167
                 H A  D   L
Sbjct: 191 PPD--SHMAEGDVLAL 204


>gi|187918411|ref|YP_001883974.1| DNA polymerase I [Borrelia hermsii DAH]
 gi|119861259|gb|AAX17054.1| DNA polymerase I [Borrelia hermsii DAH]
          Length = 905

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 30/146 (20%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +  K   +  D ETT  +    +I+ I            + F+ +  P   K      + 
Sbjct: 332 KLKKTSYVSIDTETTSTNVYEAQILGISVSF--------KEFESYYIPIETKEKKSIER- 382

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                           I  +F +FF  +  + I  N KFD         R   + + P  
Sbjct: 383 --------------EYITQKFNEFFKTKP-KLIGQNYKFDYKIFT----RHGFNAIPP-- 421

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
             DT+  A    P+++  L+ L ++Y
Sbjct: 422 YFDTMIAAYVIDPNTKVSLDFLSEKY 447


>gi|595380|gb|AAA82179.1| XPMC2 protein [Xenopus laevis]
          Length = 421

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 15/166 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D E  G+    +  I +  V +++ + K    +  ++ P  R        + GI 
Sbjct: 233 RTVAMDCEMVGVGMDGEESI-LARVSIVNLFGKCV--YDKYVKPTERVTDYR-TAVSGIR 288

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K    F  +  E  +    +    + H    D+  +  +       P    R    
Sbjct: 289 PEDVKKGEPFKVVQKEVSEIL--RGRTLVGHAVHNDLKILFLDH------PKKAIRDTQK 340

Query: 127 LSIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVY 171
               ++K  S R  L  LC++   + +     H ++ D+     +Y
Sbjct: 341 YKPFKQKVKSGRPSLKLLCEKILNVKVQTGE-HCSVQDAQAAMRLY 385


>gi|148224706|ref|NP_001079510.1| RNA exonuclease 4 [Xenopus laevis]
 gi|71153420|sp|Q91560|REXO4_XENLA RecName: Full=RNA exonuclease 4; AltName: Full=Exonuclease XPMC2;
           AltName: Full=Prevents mitotic catastrophe 2 protein
 gi|27696424|gb|AAH43958.1| Xpmc2 protein [Xenopus laevis]
          Length = 421

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 15/166 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D E  G+    +  I +  V +++ + K    +  ++ P  R        + GI 
Sbjct: 233 RTVAMDCEMVGVGMDGEESI-LARVSIVNLFGKCV--YDKYVKPTERVTDYR-TAVSGIR 288

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E +K    F  +  E  +    +    + H    D+  +  +       P    R    
Sbjct: 289 PEDVKKGEPFKVVQKEVSEIL--RGRTLVGHAVHNDLKILFLDH------PKKAIRDTQK 340

Query: 127 LSIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVY 171
               ++K  S R  L  LC++   + +     H ++ D+     +Y
Sbjct: 341 YKPFKQKVKSGRPSLKLLCEKILNVKVQTGE-HCSVQDAQAAMRLY 385


>gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
 gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
          Length = 879

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 31/155 (20%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +K   I FD ETTGLD+K  +I+        +        + F  P          ++ 
Sbjct: 313 LDKESIIAFDTETTGLDAKEAKIVGFSFCMNEN--------EAFYVPLTHNYLGVGEQI- 363

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                    K +   IF+ F           I HN K+D   I       N +   P   
Sbjct: 364 ----SLQSAKKAIELIFNHF----------VIGHNLKYDFKIIQN-----NFNLTLPQEY 404

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            DT+ +A  K+PS R +++ L  R     ++ + H
Sbjct: 405 ADTMILAWLKNPSLRVNMDDLALRL---FNYETLH 436


>gi|260463972|ref|ZP_05812168.1| Exonuclease [Mesorhizobium opportunistum WSM2075]
 gi|259030347|gb|EEW31627.1| Exonuclease [Mesorhizobium opportunistum WSM2075]
          Length = 204

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 16/167 (9%)

Query: 26  IIEIGAVEL--LDYSKTNRTFQVFLCPNGR-----KNSPEALKLHGITDEFLK-DKPSFS 77
           I +IGA++L   D      T + ++ P  R        P   KL GIT++ ++ +  +  
Sbjct: 32  IAQIGAIKLGLEDDFPLLGTHKAYIRPVDRFGQRYALDPFFTKLTGITEKDVETEGVALG 91

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS 137
              +    F     A + +     ++  I          P  P+   D            
Sbjct: 92  EALANVDRF--SGGARFWSWGKD-ELNMIAISCYIAGIQPSIPATRFDNAVKLLIAAGMP 148

Query: 138 RNDL-----NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             DL     N L   YG+       H AL D+  L+     +M+ G 
Sbjct: 149 IEDLARTPSNKLADYYGVEHPPLHGHEALDDALSLAYTLQHLMLTGK 195


>gi|271968895|ref|YP_003343091.1| oligoribonuclease [Streptosporangium roseum DSM 43021]
 gi|270512070|gb|ACZ90348.1| putative oligoribonuclease; K01175 [Streptosporangium roseum DSM
           43021]
          Length = 200

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 28/167 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEAL---KLH---G 64
            D E TGLD   D ++E+  V      ++ +    V + P        +    ++H   G
Sbjct: 8   IDCEMTGLDLGRDALVEVACVVTDGELNQLDEGVDVVIKPPPEALEQMSEVVREMHTASG 67

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +  E L    + +   +   ++        + A    ++   D  FI  ++  +  D   
Sbjct: 68  LL-EVLGGGVTLAEAEALVLEYIKGHIPEPKKAPLCGNSISTDRSFIARDMPAV--DMFL 124

Query: 120 PSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             R+ID  S+   ARR +P          + Y  +   +  H AL D
Sbjct: 125 HYRMIDVSSVKELARRWYP----------RVYFASPEKQGGHRALAD 161


>gi|148698604|gb|EDL30551.1| prion protein interacting protein 1, isoform CRA_b [Mus musculus]
 gi|149035533|gb|EDL90214.1| similar to prion protein interacting protein 1, isoform CRA_b
           [Rattus norvegicus]
          Length = 160

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 48/139 (34%), Gaps = 15/139 (10%)

Query: 39  KTNRTFQVFLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN------ 91
           +   TF +++ P      +P   +L GI    +  +PS   +     ++  ++       
Sbjct: 2   EIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNV 61

Query: 92  -AEWIAHNAKFDVG-FINAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKR 147
            + ++     +D+   +  +   +     D  +    L  A         +N L  + K 
Sbjct: 62  KSIFVT-CGDWDLKVMLPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK- 119

Query: 148 YGITISH-RSKHGALLDSH 165
            G+++ H    H  + D  
Sbjct: 120 -GLSLQHIGRPHSGIDDCK 137


>gi|257069110|ref|YP_003155365.1| N-acyl-D-glucosamine 2-epimerase [Brachybacterium faecium DSM 4810]
 gi|256559928|gb|ACU85775.1| N-acyl-D-glucosamine 2-epimerase [Brachybacterium faecium DSM 4810]
          Length = 634

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRK---NSPEALKLH 63
           R I  D E TGLD + D ++EI   V   D +       V + P         P  + +H
Sbjct: 12  RIIWVDCEMTGLDKQRDALVEIAVLVTDADLNILGDGVDVVIKPPAEALEGMDPFVVNMH 71

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINK 115
              G+ +E L    +     +    +  +       A    ++   D  F++ ++    +
Sbjct: 72  TVSGLIEE-LDGGMTLQEAQARCLAYVQQYCPEPGKAPLAGNSVGTDRVFLDRDVPEFAQ 130

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                +  + +L  +A+R  P            Y I   H   H AL D
Sbjct: 131 WLSYRTIDVSSLKELAKRWFPRV---------YYNIPAKHGG-HRALAD 169


>gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221]
 gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221]
 gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3]
          Length = 879

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 31/155 (20%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +K   I FD ETTGLD+K  +I+        +        + F  P          ++ 
Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMNEN--------EAFYVPLTHNYLGVGEQI- 363

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                    K +   IF+ F           I HN K+D   I       N D   P + 
Sbjct: 364 ----SLQSAKKAIEVIFNHF----------VIGHNLKYDFKIIQN-----NFDLNLPQKY 404

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            DT+ +A  K+PS R +++ L  R     ++ + H
Sbjct: 405 ADTMILAWLKNPSLRVNMDDLALRL---FNYETLH 436


>gi|325119438|emb|CBZ54991.1| Oligoribonuclease, related [Neospora caninum Liverpool]
          Length = 342

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 56/173 (32%), Gaps = 29/173 (16%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLD---YSKTNRTFQVFLCPNGRK---NSPEALKL 62
            +  D E TGLD + D+IIEI  +                + +  + +          K 
Sbjct: 167 IVWIDCEMTGLDVERDQIIEIAVIVTDGQCRRRIVGP--HLIIHASDKLLDGMDEWCKKT 224

Query: 63  H---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRIN 114
           H   G+T    +   + +    +  DF +      + A    ++   D  F+  ++ R+ 
Sbjct: 225 HGNSGLTAACRQSTTTLADAEEKILDFVSRHVATTRVAPLGGNSVHVDRQFLTKQMPRLI 284

Query: 115 KDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
                    + T+  +A+R  P                    + H AL D H 
Sbjct: 285 AHLSYRIIDVSTVKELAKRWKPELPF------------FEKANNHRALDDIHA 325


>gi|226307350|ref|YP_002767310.1| oligoribonuclease [Rhodococcus erythropolis PR4]
 gi|229494052|ref|ZP_04387821.1| oligoribonuclease [Rhodococcus erythropolis SK121]
 gi|226186467|dbj|BAH34571.1| oligoribonuclease [Rhodococcus erythropolis PR4]
 gi|229319121|gb|EEN84973.1| oligoribonuclease [Rhodococcus erythropolis SK121]
          Length = 202

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 27/173 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG---RKNSPEALK 61
           + + +  D E TGL  ++D++IEI A V   D +       + +  +            K
Sbjct: 5   QDKLVWIDCEMTGLRLESDKLIEIAALVTDSDLNILGEGVDIVIHADDDALAAMPDVVKK 64

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRI 113
           +H   G+T+E  K   + +    E   +  +       A    ++   D GFI+ ++  +
Sbjct: 65  MHAKSGLTEEVRKSTVTLAEAEKEVLAYIRKHVPVAGTAPLAGNSIATDRGFISRDMTAL 124

Query: 114 NKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             D     R+ID  SI   +RR +P            +G        H AL D
Sbjct: 125 --DTYLHYRMIDVSSIKELSRRWYPR---------IYFGQP-EKGLAHRALAD 165


>gi|51245369|ref|YP_065253.1| hypothetical protein DP1517 [Desulfotalea psychrophila LSv54]
 gi|50876406|emb|CAG36246.1| unknown protein [Desulfotalea psychrophila LSv54]
          Length = 188

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 61/181 (33%), Gaps = 10/181 (5%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVF----LCPNGRKNSPE--ALK 61
            ++ DIETT    +   I+E+G V L L+   T   F       +     +  P     K
Sbjct: 5   ILIIDIETTNFLKEGGSIVEVGMVALDLESGVTKIIFDSLCREKILTGRHREPPFGWIFK 64

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP- 120
              +T E +++ P F S+ +E     N       A+N  FD  F+ +      K    P 
Sbjct: 65  NSDLTVEEVREAPDFDSLRAEIQSIINAYPLGATAYNRSFDFDFLESRSLSFPKKLPCPM 124

Query: 121 --SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                I  +    R        +      +     +  KH    D+   + +  ++   G
Sbjct: 125 LLCTDICKIPSPYRYKDYKWPKVEEAWDYFFPDHPYDEKHRGADDALHEAKIVYELYKQG 184

Query: 179 S 179
            
Sbjct: 185 Q 185


>gi|290992875|ref|XP_002679059.1| exonuclease III protein [Naegleria gruberi]
 gi|284092674|gb|EFC46315.1| exonuclease III protein [Naegleria gruberi]
          Length = 220

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 68/191 (35%), Gaps = 21/191 (10%)

Query: 9   KIVFDIETTGLD---SKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEAL-KLH 63
            +V D E +  D   +  + IIE   V       K +  F  ++ P       +   +L 
Sbjct: 17  FLVLDFEASCDDKIKNFRNEIIEFPTVAINAKTVKIDHEFHYYVKPKANPILTDFCKELT 76

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKF------DVGFINAELQRINKD 116
           GI  +++ +   F  +      F N+   + +I+ N  F      D        ++  K+
Sbjct: 77  GIQQDWIDNGVEFEDVLK----FHNQWMMDNFISKNLTFAFVTCGDWDLKTMITKQCRKE 132

Query: 117 PLDPSRIIDTLSIARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            +       +    ++K+        + +  +     + +  +  H  + D   ++ +  
Sbjct: 133 NIKVPSYFSSWVNIKKKYTEIYSKHVHGMTDMLNHMKLELIGK-HHSGIDDCKNIARILC 191

Query: 173 KMMVGGSQINF 183
           +M+  G QI+ 
Sbjct: 192 EMLKQGKQIDI 202


>gi|255081188|ref|XP_002507816.1| predicted protein [Micromonas sp. RCC299]
 gi|226523092|gb|ACO69074.1| predicted protein [Micromonas sp. RCC299]
          Length = 153

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 15/137 (10%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           +   + P     +       GIT+E ++   +    +  E  +    +    + H+ + D
Sbjct: 28  YDKLVKP-AEPITNYNTAHSGITEEQMRGVTTTLEDVQRELLELIACE-TIVVGHSLEND 85

Query: 103 VGFINAELQRINKDPLDPSRIIDTLS-IARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           +  +           L  +R +DT++    ++ P  R  L  L +RY         H ++
Sbjct: 86  LKRLR----------LIHARCVDTVALYPHQRGPPYRTKLAHLTERYLARKIQEGSHDSV 135

Query: 162 LDSHLLSDV-YIKMMVG 177
            D+    ++  +K + G
Sbjct: 136 ADARATLELAMLKFVFG 152


>gi|111018425|ref|YP_701397.1| oligoribonuclease [Rhodococcus jostii RHA1]
 gi|123340872|sp|Q0SGU7|ORN_RHOSR RecName: Full=Oligoribonuclease
 gi|110817955|gb|ABG93239.1| oligoribonuclease [Rhodococcus jostii RHA1]
          Length = 199

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 27/173 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG---RKNSPEALK 61
           + + +  D E TGL    D++IEI A V   + +       + +  +            K
Sbjct: 2   QDKLVWIDCEMTGLRLGTDKLIEIAALVTDSELNVLGEGVDIVIHADDDALAAMPDVVTK 61

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRI 113
           +H   G+TDE  K   + +    +   +  E       A    ++   D GFI  ++  +
Sbjct: 62  MHENSGLTDEVRKSTVTLAEAEQQVLAYIREHVPVAGTAPLAGNSIATDRGFIARDMPDL 121

Query: 114 NKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             D     R+ID  SI   +RR +P            +G        H AL D
Sbjct: 122 --DTYLHYRMIDVSSIKELSRRWYPR---------IYFGQP-EKGLAHRALAD 162


>gi|332532198|ref|ZP_08408079.1| hypothetical protein PH505_ad00340 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038296|gb|EGI74741.1| hypothetical protein PH505_ad00340 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 61

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              + T+  +R+     +   L +L   + + ++  S H AL D+   +++ + +
Sbjct: 1   MPKMCTVVESRKAFKGLKSYSLGNLSAHFNLNLT--SHHRALADATATAELLLLI 53


>gi|226360543|ref|YP_002778321.1| oligoribonuclease [Rhodococcus opacus B4]
 gi|226239028|dbj|BAH49376.1| oligoribonuclease [Rhodococcus opacus B4]
          Length = 199

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 27/173 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG---RKNSPEALK 61
           + + +  D E TGL    D++IEI A V   + +       + +  +            K
Sbjct: 2   QDKLVWIDCEMTGLRLGTDKLIEIAALVTDSELNVLGEGVDIVIHADDDALAAMPDVVTK 61

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRI 113
           +H   G+TDE  K   + +    +   +  E       A    ++   D GFI  ++  +
Sbjct: 62  MHENSGLTDEVRKSTVTLAEAEQQVLAYIREHVPVAGTAPLAGNSIATDRGFIARDMPDL 121

Query: 114 NKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             D     R+ID  SI   +RR +P            +G        H AL D
Sbjct: 122 --DTYLHYRMIDVSSIKELSRRWYPR---------IYFGQP-EKGLAHRALAD 162


>gi|261337523|ref|ZP_05965407.1| putative DNA polymerase III, epsilon subunit [Bifidobacterium
           gallicum DSM 20093]
 gi|270277923|gb|EFA23777.1| putative DNA polymerase III, epsilon subunit [Bifidobacterium
           gallicum DSM 20093]
          Length = 136

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 10/136 (7%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+E  G       +IE+ A+ L   ++ +  F   + P        +  L GI  +  
Sbjct: 2   VLDVEIIGAGPSV-EVIEVDALRLR-GTEVSYQFGQLIQPEN-PPPWSSTLLTGIRPDDF 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDPSRIIDTL 127
            D P    +   F      Q    I HN  ++  + +            P    R    L
Sbjct: 59  LDAPDAGYVMPGFISAL--QGLTVIGHNVGYENAWRHPPQGLRDEYGMPPTPRHRHR--L 114

Query: 128 SIARRKHPSSRNDLNS 143
                +HP++R+ L +
Sbjct: 115 ERIPHQHPTTRHRLTT 130


>gi|323388615|gb|ADX60112.1| C2H2 transcription factor [Zea mays]
          Length = 336

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 67/221 (30%), Gaps = 40/221 (18%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
           G D   D    +  V   ++      FQ ++ P     +    ++ GI  E+L+D     
Sbjct: 128 GSDGSMDLCARVCLVGEDEHVI----FQTYVKPT-LPVTNYRYEVTGIRPEYLRDAMPLK 182

Query: 78  SIFSEFWDFFN-------------EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                  +                 +    + H        ++ +L+R+  +      I 
Sbjct: 183 VAQRRIQEILCNGESLWKLRPRSYGRAKVLVGHG-------LDHDLERLGLEY-PAFMIR 234

Query: 125 DTLSIARRKHPSS-RNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           DT         S   N L  L + Y G  I H        D      +YI+M     Q +
Sbjct: 235 DTAKYPPLMKTSKLSNSLKYLTQAYLGYDI-HTGIQDPYEDCVATMRLYIRMRSQAXQRD 293

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           +   + E            N     R + L  R++ EEL  
Sbjct: 294 YNSGSGE----------AQNNYPAWRQREL-XRMSPEELLA 323


>gi|254372051|ref|ZP_04987544.1| oligoribonuclease [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254375197|ref|ZP_04990677.1| oligoribonuclease [Francisella novicida GA99-3548]
 gi|151569782|gb|EDN35436.1| oligoribonuclease [Francisella novicida GA99-3549]
 gi|151572915|gb|EDN38569.1| oligoribonuclease [Francisella novicida GA99-3548]
 gi|328676136|gb|AEB27006.1| Oligoribonuclease [Francisella cf. novicida Fx1]
          Length = 178

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 23/163 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCPNG--RKNSPEALKLH---G 64
            D+E TGLD  + +IIEI A+            +      P+      +   +K H   G
Sbjct: 10  IDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHAETG 69

Query: 65  IT----DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +T    D  +  + +   I      F   Q++    ++   D  F+   +  I++     
Sbjct: 70  LTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYR 129

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              + TL +  +     +                ++ H AL D
Sbjct: 130 MLDVTTLKLLNQYWGDGKG------------FEKKNTHKALDD 160


>gi|296170420|ref|ZP_06852008.1| oligoribonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894891|gb|EFG74612.1| oligoribonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 215

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 61/173 (35%), Gaps = 27/173 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLH- 63
           +   +  D E TGLD   D++IEI A V   D +       V +  +    S     +  
Sbjct: 2   RDELVWIDCEMTGLDLGTDKLIEIAALVTDADLNILGDGVDVVIHADDAALSSMIDVVTE 61

Query: 64  -----GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRI 113
                G+ DE        ++  +   D+  +     + A    ++   D  FI  ++  +
Sbjct: 62  MHSRSGLIDEVRASTVDLATAEAMVLDYVGQHVKQPKTAPLAGNSIATDRAFIARDMPAL 121

Query: 114 NKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             D     R+ID  SI    RR +P            +G  +     H AL D
Sbjct: 122 --DSFLHYRMIDVSSIKELCRRWYPR---------IYFGQPVKGL-AHRALAD 162


>gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100]
 gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100]
          Length = 879

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 54/156 (34%), Gaps = 31/156 (19%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + +    + FD ETTGLD+K  +I+                 + F  P          ++
Sbjct: 312 KIDDQSIVAFDTETTGLDTKEAKIVGFSFCSH--------ESEAFYVPLAHDYLGVCKQI 363

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                     K     I+           +  I HN K+D   I       N + L P  
Sbjct: 364 -----SMQAAKKGIEKIYQ----------STVIGHNLKYDFEIIKN-----NFNLLPPKN 403

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
             DT+ +A  K PS R +++ L KR      + + H
Sbjct: 404 YADTMILAWLKEPSLRVNMDVLAKR---IFDYETLH 436


>gi|296270642|ref|YP_003653274.1| exonuclease RNase T and DNA polymerase III [Thermobispora bispora
           DSM 43833]
 gi|296093429|gb|ADG89381.1| Exonuclease RNase T and DNA polymerase III [Thermobispora bispora
           DSM 43833]
          Length = 198

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 24/165 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEA---LKLH---G 64
            D E TGLD   D ++E+  +      +  +    V + P        +    ++H   G
Sbjct: 8   IDCEMTGLDLTRDALVEVACIVTDGELNPVDEGVAVVIKPPPETLEQMSDVVREMHTASG 67

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + DE L    + +   +    +        + A    ++   D  F+  ++  ++     
Sbjct: 68  LLDE-LAGGVTLAEAEATVLGYIRSHVPEAKKAPLCGNSIATDRAFLARDMPLVDAYLHY 126

Query: 120 PSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
               + T+  +ARR +P          + Y  +   +  H AL D
Sbjct: 127 RMVDVSTIKELARRWYP----------RVYFASPEKQGGHRALAD 161


>gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97]
          Length = 879

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 31/155 (20%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +K   I FD ETTGLD+K  +I+        +        + F  P        + +  
Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMSEN--------EAFYVPLTHNYLGVSKQ-- 362

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I+ E    K +   IF+ F           I HN K+D   I       N     P + 
Sbjct: 363 -ISLE--SAKKAIELIFNHF----------VIGHNLKYDFKIIQN-----NFGLNLPQKY 404

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            DT+ +A  K+PS R +++ L  R     ++ + H
Sbjct: 405 ADTMILAWLKNPSLRVNMDDLALRL---FNYETLH 436


>gi|118473234|ref|YP_888984.1| oligoribonuclease [Mycobacterium smegmatis str. MC2 155]
 gi|118174521|gb|ABK75417.1| oligoribonuclease [Mycobacterium smegmatis str. MC2 155]
          Length = 216

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 65/173 (37%), Gaps = 27/173 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPE---ALK 61
           +   +  D E TGLD K+DR+IEI   V   D +       V +  +    S       +
Sbjct: 9   RDELVWIDCEMTGLDLKSDRLIEIAVLVTDADLNILGDGLDVVIHADDESLSSMVDVVKQ 68

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRI 113
           +H   G+T+E  +     ++      D+        + A    ++   D GFI  ++ ++
Sbjct: 69  MHARSGLTEEVRRSTVDLATAEEMVLDYIRGHVKQAKTAPLAGNSIATDRGFIARDMPKL 128

Query: 114 NKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             D     R+ID  SI    RR +P            +G        H AL D
Sbjct: 129 --DDYLHYRMIDVSSIKELCRRWYPR---------IYFGQP-EKGLAHRALAD 169


>gi|62000631|ref|NP_001005351.2| interferon-stimulated gene 20 kDa protein [Sus scrofa]
 gi|85541649|sp|Q66UW5|ISG20_PIG RecName: Full=Interferon-stimulated gene 20 kDa protein
 gi|61982216|gb|AAU09455.2| ISG20 [Sus scrofa]
          Length = 181

 Score = 52.9 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 15/167 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E  G+  + +  +   ++  +  +     +  F+ P G        ++ G+T + 
Sbjct: 8   VAMDCEMVGMGPRRESGLARCSLVNVHGAVL---YDKFIQPEGEITDYR-TRVSGVTPQH 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +     F+    E       +    + H+ K D   +  ++ R            D L  
Sbjct: 64  MVGATPFAVARLEILQLL--KGKLVVGHDLKHDFQALKEDMNRYTI----YDTSTDMLLW 117

Query: 130 ARRKHPSSRN-DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYI 172
              K    R   L  LC+R     I  S    H ++ D+    ++Y 
Sbjct: 118 REAKLDHCRRVSLRVLCERLLHKSIQNSLLG-HSSVEDAKATMELYQ 163


>gi|226495541|ref|NP_001148587.1| RNA exonuclease 4 [Zea mays]
 gi|195620612|gb|ACG32136.1| RNA exonuclease 4 [Zea mays]
          Length = 342

 Score = 52.5 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 67/221 (30%), Gaps = 40/221 (18%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
           G D   D    +  V   ++      FQ ++ P     +    ++ GI  E+L+D     
Sbjct: 128 GSDGSMDLCARVCLVGEDEHVI----FQTYVKPT-LPVTNYRYEVTGIRPEYLRDAMPLK 182

Query: 78  SIFSEFWDFFN-------------EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                  +                 +    + H        ++ +L+R+  +      I 
Sbjct: 183 VAQRRIQEILCNGESLWKLRPRSYGRAKVLVGHG-------LDHDLERLGLEY-PAFMIR 234

Query: 125 DTLSIARRKHPSS-RNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           DT         S   N L  L + Y G  I H        D      +YI+M     Q +
Sbjct: 235 DTAKYPPLMKTSKLSNSLKYLTQAYLGYDI-HTGIQDPYEDCVATMRLYIRMRSQAHQRD 293

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           +   + E            N     R + L  R++ EEL  
Sbjct: 294 YNSGSGE----------AQNNYPAWRQREL-DRMSPEELLA 323


>gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 879

 Score = 52.5 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 31/155 (20%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +K   I FD ETTGLD+K  +I+        +        + F  P          ++ 
Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMNEN--------EAFYVPLTHNYLGVGEQI- 363

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                    K +   IF+ F           I HN K+D   I       N     P + 
Sbjct: 364 ----SLQSAKKAIEVIFNHF----------VIGHNLKYDFKIIQN-----NFGLNLPQKY 404

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            DT+ +A  K+PSSR +++ L  R     ++ + H
Sbjct: 405 ADTMILAWLKNPSSRVNMDDLALRL---FNYETLH 436


>gi|194700182|gb|ACF84175.1| unknown [Zea mays]
          Length = 336

 Score = 52.5 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 67/221 (30%), Gaps = 40/221 (18%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
           G D   D    +  V   ++      FQ ++ P     +    ++ GI  E+L+D     
Sbjct: 128 GSDGSMDLCARVCLVGEDEHVI----FQTYVKPT-LPVTNYRYEVTGIRPEYLRDAMPLK 182

Query: 78  SIFSEFWDFFN-------------EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                  +                 +    + H        ++ +L+R+  +      I 
Sbjct: 183 VAQRRIQEILCNGESLWKLRPRSYGRAKVLVGHG-------LDHDLERLGLEY-PAFMIR 234

Query: 125 DTLSIARRKHPSS-RNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           DT         S   N L  L + Y G  I H        D      +YI+M     Q +
Sbjct: 235 DTAKYPPLMKTSKLSNSLKYLTQAYLGYDI-HTGIQDPYEDCVATMRLYIRMRSQAHQRD 293

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           +   + E            N     R + L  R++ EEL  
Sbjct: 294 YNSGSGE----------AQNNYPAWRQREL-DRMSPEELLA 323


>gi|91787582|ref|YP_548534.1| oligoribonuclease [Polaromonas sp. JS666]
 gi|91696807|gb|ABE43636.1| Exonuclease [Polaromonas sp. JS666]
          Length = 187

 Score = 52.5 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 60/192 (31%), Gaps = 55/192 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-AL 60
           ++K+    +  D E TGLD + +R+IEI  V                 P          L
Sbjct: 8   LKKSDQNLVWLDCEMTGLDPEKERLIEIAVVVTG--------------PQLTPRIEGPVL 53

Query: 61  KLHG---ITDEF---------------------LKDKPSFSSIFSEFWDFFNEQNAEWIA 96
            +H    + D+                      + ++ + + + +    +  +  +    
Sbjct: 54  AIHQSDELLDQMDNWNKGTHGRSGLIDKVKASTVTEEAAEAQLLAFLAQYVPKGGSPLCG 113

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITIS 153
           ++   D  F+   + ++  +     R +D  +    A+R  P   N              
Sbjct: 114 NSISQDRRFLVKYMPKL--EAFLHYRNVDVSTFKELAKRWRPEVYNS-----------FK 160

Query: 154 HRSKHGALLDSH 165
            R  H AL D H
Sbjct: 161 KRQSHTALADVH 172


>gi|89097554|ref|ZP_01170443.1| exonuclease [Bacillus sp. NRRL B-14911]
 gi|89087850|gb|EAR66962.1| exonuclease [Bacillus sp. NRRL B-14911]
          Length = 320

 Score = 52.5 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 70/176 (39%), Gaps = 12/176 (6%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLH 63
            + FD E      G+  ++   I +GAV+    ++    F  ++ P   +  S    +L 
Sbjct: 7   YVFFDFEMLCSNKGMLFEDMEAIRLGAVKYDLITEKLSFFDEYIKPENHKPLSMFCKRLT 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKD----PL 118
           GI D+ L+D   F+ +FS F  +    +   + + +   D+  +NA+  R          
Sbjct: 67  GIEDKDLRDADRFADVFSTFLYWVNGVKKTRFYSWSKS-DLSRLNADAARHGIPSATIEK 125

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             SR +D   +   +  ++   + +    YG+     + H  + DS+    ++   
Sbjct: 126 INSRYVDFQEVFSNRAANNTPSVENALALYGLDFVGET-HNPMFDSYNTLRIFFAF 180


>gi|68535589|ref|YP_250294.1| oligoribonuclease [Corynebacterium jeikeium K411]
 gi|68263188|emb|CAI36676.1| putative oligoribonuclease [Corynebacterium jeikeium K411]
          Length = 210

 Score = 52.5 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 23/169 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR---KNSPEALKLH 63
           R +  D E TGLD     ++EI  +    D +  +    + +    R   +      K+H
Sbjct: 13  RLVWVDCEMTGLDPDQHVLVEIAVIVTDADLTPLDEGLDLVIHAAERDLARMDAVVTKMH 72

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINK 115
              G+T++      +      +  D+  +       A    +    D  FIN  +  +++
Sbjct: 73  GESGLTEQIRSSDITLEEAEEQVLDYVKKHVPTAGVAPLAGNTIGADRKFINRYMPHLDQ 132

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + +L  +ARR +P            Y    +    H AL D
Sbjct: 133 YLHYRMIDVSSLKELARRWYPH----------VYNGQPAKGMAHRALAD 171


>gi|219109276|pdb|3CG7|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
 gi|219109277|pdb|3CG7|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
 gi|219109290|pdb|3CM5|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
           Bound With Mn
 gi|219109291|pdb|3CM5|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
           Bound With Mn
 gi|219109292|pdb|3CM6|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
           Bound With Er
 gi|219109293|pdb|3CM6|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
           Bound With Er
          Length = 308

 Score = 52.5 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 70/195 (35%), Gaps = 27/195 (13%)

Query: 10  IVFDIETTGLDSKND---RIIEIGAVELL---DYSKTNRTFQVFLCPN-GRKNSPEALKL 62
           ++ D ETT   +  D    +I+   V      D  + + +F  ++ P   R  +   +  
Sbjct: 22  LILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDF 81

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFF---------------NEQNAEWIAHNAKFDVGF-I 106
            GI    +    +F  ++ +F  +                + Q+   IA          +
Sbjct: 82  TGIPQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQM 141

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            A  ++        +  +D +     K  S+  ++  + + Y +    R  H A+ D   
Sbjct: 142 PAFFRQYINLYKIFTNEMDRMGP---KELSATTNIGKMNEYYDLPTIGR-AHDAMDDCLN 197

Query: 167 LSDVYIKMMVGGSQI 181
           ++ +  +M+  G+++
Sbjct: 198 IATILQRMINMGAKV 212


>gi|302563935|ref|NP_001180742.1| oligoribonuclease, mitochondrial [Macaca mulatta]
 gi|90080269|dbj|BAE89616.1| unnamed protein product [Macaca fascicularis]
          Length = 237

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLH 63
            R +  D+E TGLD + D+IIE+   +   D +       + +          +   K H
Sbjct: 41  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 100

Query: 64  ----GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
               G+T    +   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 101 HGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMK 160

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P          + Y       + H AL D
Sbjct: 161 HLHYRIIDVSTVKELCRRWYP----------EEYEFAPKKAASHRALDD 199


>gi|317027139|ref|XP_001400207.2| RNA binding protein (Arp) [Aspergillus niger CBS 513.88]
          Length = 612

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 80/256 (31%), Gaps = 56/256 (21%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAVELLDYSKTNRTFQ---VFLCPNGRKNSPE 58
           R IV  + TT    G+    D   +IE+G + L   +KT        V + P     +P 
Sbjct: 12  RYIVIHVATTCDEHGVYVTKDSAEVIELGWILL--DTKTCEELHHESVLVKPVNTPITPL 69

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-- 116
              L  +T E ++   +F    + F  F  E     I+ N +F    +++   R+     
Sbjct: 70  CTSLTTLTWEHVRSAGTFRDAINRFDAFAQEH---LISKNLEFAFVTLDSWDLRVQLPRE 126

Query: 117 ----------PLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGI-------TI 152
                      L  SR  D  +  +R         P   + L+++C    +        I
Sbjct: 127 ARDKAVVLPAYLQHSRTFDLRTEYQRWQTHHPESLPFGPSSLSNICAALEVEPVQSSAPI 186

Query: 153 SHR-SKH----------GALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP 201
            H    H           A+ ++  L+ V   ++      +                   
Sbjct: 187 KHNLPFHLQALAPASPRRAMEEAITLARVLRGLIRKSQPPHEH-----PEILTRPMDARA 241

Query: 202 NISLLKRDKPLFTRIT 217
           ++     ++     ++
Sbjct: 242 DVRAFLAERSKVLHLS 257


>gi|331247591|ref|XP_003336423.1| RNA exonuclease 4 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309315413|gb|EFP92004.1| RNA exonuclease 4 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 236

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 57/165 (34%), Gaps = 12/165 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + +  D E  G+  + +    +  V +++Y          ++ P  +        + GI 
Sbjct: 58  KYLAIDCEMVGVGPRGNEQSALARVSIVNYYGNVV--LDTYVQPKEKVTDYR-TWVSGIK 114

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            E L +  +F  +  +  D  +++    I H    D+  +     R         + +  
Sbjct: 115 PEHLHNASTFEDVTRKVADLIHDK--ILIGHAISNDLQALLLTHPRQLIRDTSTYQPLRQ 172

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           L  A+ K PS +     L     I    +  H ++ D+     +Y
Sbjct: 173 L--AKTKFPSLKKL-TLLLLDLEI---QKDSHCSVDDARATLAIY 211


>gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1]
 gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1]
          Length = 905

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 63/182 (34%), Gaps = 48/182 (26%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD ETTGLD + D+++                F      +     P A    G    
Sbjct: 336 IVAFDTETTGLDYEKDKLVG---------------FSFSFNDDEAFYVPFAHFYLG---- 376

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + D+ S           FN +    + HN KFD+ F++  L     +    +   D++ 
Sbjct: 377 -VPDQISEKDAALAMKKIFNSK---VVGHNIKFDLHFVSRFL-----NDDMLNIYSDSMI 427

Query: 129 IARRKHPSSRNDLNSLCKRY-------------------GITISHRSKHGALLDSHLLSD 169
           +A   +P S   L+ L  +                     + +   SK+ A  D+++   
Sbjct: 428 LAWLINPESALGLDKLSDKLLDHTMLGFKDTVKKGETFASVELEDASKY-AAEDAYITLK 486

Query: 170 VY 171
           ++
Sbjct: 487 LF 488


>gi|171920539|ref|ZP_02931814.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|185178742|ref|ZP_02964555.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188024282|ref|ZP_02996975.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188024438|ref|ZP_02997092.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188518687|ref|ZP_03004114.1| exonuclease family [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524119|ref|ZP_03004192.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195867468|ref|ZP_03079472.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273258|ref|ZP_03205794.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209554562|ref|YP_002284534.1| hypothetical protein UUR10_0122 [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225550904|ref|ZP_03771853.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225551391|ref|ZP_03772337.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|171903235|gb|EDT49524.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|184209349|gb|EDU06392.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188018731|gb|EDU56771.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188018953|gb|EDU56993.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188997687|gb|EDU66784.1| exonuclease family [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659913|gb|EDX53293.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195660944|gb|EDX54197.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198249778|gb|EDY74558.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209542063|gb|ACI60292.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225379206|gb|EEH01571.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|225380058|gb|EEH02420.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 376

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 64/176 (36%), Gaps = 24/176 (13%)

Query: 10  IVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  DIE T  D+K D RII+     L       R F     P+   NS        I   
Sbjct: 17  VFVDIEAT--DNKGDQRIIQFSGYRLNIKKNKIRRFNKKFNPDQEINS-------RIKTL 67

Query: 69  F--------LKDKPSFSSI-FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
                    ++  P        E ++F   +NA  +     FD+  ++        D L+
Sbjct: 68  LNFNKNFNNIEQMPKLDQKWAKEIYNFV--KNAIVVTF-TDFDIKKMHQLFSHYEFD-LE 123

Query: 120 PSRIIDTLSIA-RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                D      ++ H ++   L SL    GI I     H AL D+ +L ++++ +
Sbjct: 124 KIIYFDIYKFFEKKLHTNAVPSLFSLGILSGIKIDFFKLHNALYDAFILKEIFLHI 179


>gi|149716526|ref|XP_001502237.1| PREDICTED: similar to Oligoribonuclease, mitochondrial precursor
           (Small fragment nuclease) (RNA exonuclease 2 homolog)
           [Equus caballus]
          Length = 237

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA---LKL 62
            R +  D+E TGLD + D+IIE+   +   D +       + +          +    + 
Sbjct: 41  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 100

Query: 63  HGIT--DEFLKDKP-SFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
           HG +   + +K+   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 101 HGKSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQFMK 160

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P          + Y       + H AL D
Sbjct: 161 HLHYRIIDVSTVKELCRRWYP----------EEYEFAPKKAASHRALDD 199


>gi|284030055|ref|YP_003379986.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
           17836]
 gi|283809348|gb|ADB31187.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
           17836]
          Length = 202

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 63/177 (35%), Gaps = 25/177 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS---PEALKLH 63
           R +  D E TGLD   D +IE+   V   + +       + + P              +H
Sbjct: 4   RLVWIDCEMTGLDLAADALIEVAVLVTDYELNVLGEGIDLVIAPPPAALEQMGQFVRDMH 63

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINK 115
              G+ DE L      +    +  DF        + A    ++   D  F+  ++ ++  
Sbjct: 64  TGSGLLDE-LATGIPLAEAEQQVLDFITGYVKEPRKAALAGNSVGTDRTFLVRDMPKVEA 122

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD-SHLLSDV 170
                +  + ++  + RR +P          + Y  T +    H AL D +  ++++
Sbjct: 123 HLHYRNVDVSSIKELVRRWYP----------RVYYATPAKTGNHRALADITESIAEL 169


>gi|297690289|ref|XP_002822552.1| PREDICTED: oligoribonuclease, mitochondrial-like isoform 1 [Pongo
           abelii]
 gi|332208258|ref|XP_003253217.1| PREDICTED: oligoribonuclease, mitochondrial-like [Nomascus
           leucogenys]
          Length = 237

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLH 63
            R +  D+E TGLD + D+IIE+   +   D +       + +          +   K H
Sbjct: 41  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 100

Query: 64  ----GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
               G+T    +   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 101 HGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMK 160

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P          + Y       + H AL D
Sbjct: 161 HLHYRIIDVSTVKELCRRWYP----------EEYEFAPKKAASHRALDD 199


>gi|255930624|ref|XP_002556870.1| Pc09g00030 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211581486|emb|CAP79250.1| Pc09g00030 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 534

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 75/208 (36%), Gaps = 17/208 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS--PEALKLH-GIT 66
           I  D E  G+ +    +  + A+  L           ++ P+        +   +  GI 
Sbjct: 287 IAIDCEMVGVRNGRQALAFLSAINFLTGEVL---ISRYVNPSEEVLDWRYKFSGVTQGIM 343

Query: 67  DEFLKDKPSF---SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
              +    +F        + W+F ++     + H+ ++D+  +     ++    +  +  
Sbjct: 344 TSAVXSGAAFRTWQEARDKLWEFMDDS-TVLVGHSLQYDLEVLGISHAKVVDSAILTAET 402

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           + +   + +  P +RN  L +L K +    I  S R  H AL D++   DV I  +    
Sbjct: 403 VYSSIPSTK--PLTRNWGLKTLAKDFXGLNIQTSDRG-HNALEDAYAARDVVIWCIRNPE 459

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLK 207
            +    +  + +  ++  ++       K
Sbjct: 460 DLKVWAEKAQLQEEQKLARSRQRYGKSK 487


>gi|224532146|ref|ZP_03672778.1| DNA polymerase I [Borrelia valaisiana VS116]
 gi|224511611|gb|EEF82017.1| DNA polymerase I [Borrelia valaisiana VS116]
          Length = 907

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 55/150 (36%), Gaps = 34/150 (22%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +  K + I  D ET+ LD+   ++I I             +F+ F    G     EA 
Sbjct: 333 MEKLKKAKYISIDTETSSLDTYTAKLIGISI-----------SFKEF---EGYYIPIEA- 377

Query: 61  KLHGITDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                     K K       I  +F + F  +  + I  N KFD   +         DP+
Sbjct: 378 ----------KGKVYIEKHYIIQKFNNLFKSKP-KIIGQNYKFDYKILKNN----GFDPI 422

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
            P    DT+  A     +S+  L+ L ++Y
Sbjct: 423 PP--YFDTMIAAYLIDTNSKVSLDFLAEKY 450


>gi|145593678|ref|YP_001157975.1| oligoribonuclease [Salinispora tropica CNB-440]
 gi|145303015|gb|ABP53597.1| Exonuclease, RNase T and DNA polymerase III [Salinispora tropica
           CNB-440]
          Length = 198

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 37/174 (21%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS--PEALK-LH---G 64
            D E TGLD   D++IE+ A+    D +       V +  +       PE +  +H   G
Sbjct: 10  IDCEMTGLDLGGDKLIEVAALVTDPDLNVLGEGVDVVIHADEAALDKMPEIVATMHAKSG 69

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +T+E  +     +       D+      + + A    ++   D GFI  ++ R++     
Sbjct: 70  LTEEVRRSTIGLAEAEEMVLDYITSHVKDPRTAPLCGNSIATDRGFIARDMPRLDNHL-- 127

Query: 120 PSRIIDTLSI---ARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSH 165
             R+ID  SI    RR +P       R  L                H AL D  
Sbjct: 128 HYRMIDVSSIKELCRRWYPRVYFSQPRKGL---------------AHRALADVR 166


>gi|299532537|ref|ZP_07045927.1| oligoribonuclease [Comamonas testosteroni S44]
 gi|298719484|gb|EFI60451.1| oligoribonuclease [Comamonas testosteroni S44]
          Length = 202

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 56/189 (29%), Gaps = 49/189 (25%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + K+ +  +  D E TGL+   DRIIEI  V      +              +       
Sbjct: 22  LPKSDLNMVWLDCEMTGLNPDRDRIIEIAVVVSSSDLQI-------------RVEGPVFA 68

Query: 62  LHGITDEF----------------LKDKPSFSSI-----FSEFWDFFN----EQNAEWIA 96
           +H  +DE                 L DK   S+I      +    F      +       
Sbjct: 69  IHQ-SDELLGGMDAWNKGTHGKSGLIDKVKASTISEAEAEAALIAFLGKYVPKGKTPLCG 127

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
           ++   D  F+   + ++N      +  + TL    ++                 +     
Sbjct: 128 NSIGQDRRFMERYMPKLNNFFHYRNIDVSTLKELAKRWKPEAYT----------SFKKAQ 177

Query: 157 KHGALLDSH 165
           +H AL D H
Sbjct: 178 RHTALADVH 186


>gi|73540610|ref|YP_295130.1| oligoribonuclease [Ralstonia eutropha JMP134]
 gi|72118023|gb|AAZ60286.1| Exonuclease [Ralstonia eutropha JMP134]
          Length = 210

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 41/181 (22%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K++   +  D+E TGL   +DRIIE+  V       T+    +               L 
Sbjct: 11  KSENNLVWLDMEMTGLSPDSDRIIEVAVV------VTDSELNILAEGPVLVIHQSDAVLD 64

Query: 64  GITDE--------FLKDKP-----SFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFI 106
           G+ +          L DK      +     +E   F         +    ++   D  F+
Sbjct: 65  GMDNWNKGTHGRSGLIDKVKASTLTEEQAEAELLAFLKRWVPASKSPMCGNSICQDRRFM 124

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALL 162
              + ++  +     R +D             + L  LCKR+   I      R  H AL 
Sbjct: 125 ARYMPKL--EAFFHYRNLDV------------STLKELCKRWEPAIHKGFVKRQLHTALA 170

Query: 163 D 163
           D
Sbjct: 171 D 171


>gi|225436946|ref|XP_002271701.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 254

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 15/113 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D E  G  S     +++ A   L     N  F  ++ P     +    +L GIT+  
Sbjct: 139 IAIDCEKVGGGSDGS--LDLCARVCLIDEDENIIFHTYVQPQI-PVTNYRYELTGITEAH 195

Query: 70  LKDKPSFSSIFSEFWDFF------------NEQNAEWIAHNAKFDVGFINAEL 110
           L+D      +  +  +                +    + H+ + D+  +    
Sbjct: 196 LRDAMPLKEVREKVMEVLRNGESIGRLRLDGGKGRLLVGHDLRHDLDCLRMHY 248


>gi|149578823|ref|XP_001514027.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 350

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEAL---KL 62
            R +  D+E TGLD + D+IIE+   +   D +   +   + +          +    + 
Sbjct: 42  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAKGPNLIIKQPDELLDSMSEWCKEH 101

Query: 63  H---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
           H   G+T    +   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 102 HGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQFMK 161

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P            Y       + H AL D
Sbjct: 162 HLHYRIIDVSTVKELCRRWYPED----------YEFAQKKTASHRALDD 200


>gi|289740231|gb|ADD18863.1| three prime repair exonuclease [Glossina morsitans morsitans]
          Length = 314

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 38/154 (24%)

Query: 9   KIVFDIETTGL---DSKNDRIIEIGAVEL---LDYSKTN--------------------- 41
             V D+ET GL         I E+  +      +  +T                      
Sbjct: 10  FAVIDLETNGLPELQFNKCSITELSIIAFSSKYEGKQTEKQSTTVRKGDHLLSPKSIPEL 69

Query: 42  -RTFQVF---LCPNGRKNSPEALKLHGITDEFLKDKPSF----SSIFSEFWDFFNEQNAE 93
            R        + P G    PEA +  G+ +  L+ +  F    + +   F     +Q   
Sbjct: 70  PRALHKLNLMVNPLG-SIGPEAEEKTGLNNWMLEHERPFDKSTADLLISFLQRL-QQPVC 127

Query: 94  WIAHNAK-FDVGFINAELQRINKDPLDPSRIIDT 126
            +AHN   FD   +   +++++         +D+
Sbjct: 128 LVAHNGLGFDFPVLRYVMKKLDLKFPSSIVCVDS 161


>gi|224534662|ref|ZP_03675234.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
 gi|224513910|gb|EEF84232.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
          Length = 908

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 54/145 (37%), Gaps = 34/145 (23%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + I  D ET+ LD    R+I I             +F+ F    G     EA      
Sbjct: 339 KAKYISIDTETSSLDIYTARLIGISI-----------SFKEF---EGYYIPIEA------ 378

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                + K       I  +F +FF E N + I  N KFD   +         +P+ P   
Sbjct: 379 -----RGKIYIEKHYIIQKFNNFF-ESNPKIIGQNYKFDYKILKNN----GFNPIPP--Y 426

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
            DT+  A     +S+  L+ L ++Y
Sbjct: 427 FDTMIAAYLIDTNSKVSLDFLAEKY 451


>gi|326778782|ref|ZP_08238047.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
           griseus XylebKG-1]
 gi|326659115|gb|EGE43961.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
           griseus XylebKG-1]
          Length = 190

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 19/166 (11%)

Query: 11  VFDIETT---GLDSKN--DRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           V D+E T   G       + IIEIG   V+L    +  +  ++ + P   K SP   +L 
Sbjct: 13  VVDVEATCWDGQPPPGQVNEIIEIGLTVVDLRAGRRLAKH-RLLVRPARSKVSPFCTELT 71

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G+T   +     F+          +       A    +D      + +  + +     R 
Sbjct: 72  GLTQAEVDGGLPFAEACR-VLAVEHRTGRLPWASWGDYDRNQFTRQCRATDAEYPFGQRH 130

Query: 124 ID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            +     T S   R+ P          +  G+ +  R  H    D+
Sbjct: 131 TNAKVAFTASYGLRRRPGM----AQALEVAGLPLEGR-HHRGDDDA 171


>gi|218190704|gb|EEC73131.1| hypothetical protein OsI_07145 [Oryza sativa Indica Group]
          Length = 247

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 24/171 (14%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNS--PEALK 61
           +M  +  D+E TGLD   DRI+EI  +   D   T +     + +           E  K
Sbjct: 65  QMPLVWIDLEMTGLDVAKDRILEIACIIT-DGKLTKQIEGPDLVINQKKDLLDNMDEWCK 123

Query: 62  LH----GITDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKF-DVGFINAELQRI 113
            H    G+T   L+   S     ++  DF  +    +   IA N+ + D+ F+   + ++
Sbjct: 124 THHAASGLTQRVLQSTISEHDAETQVLDFVKKHVGSSPPLIAGNSVYVDLLFLKNYMPQL 183

Query: 114 NKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                     + + +++  R +P  R            T     KH A+ D
Sbjct: 184 AAIFSHVIVDVSSIMALCIRWYPKERKR----------TPQKGKKHRAMND 224


>gi|296216233|ref|XP_002754546.1| PREDICTED: oligoribonuclease, mitochondrial-like [Callithrix
           jacchus]
          Length = 237

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLH 63
            R +  D+E TGLD + D+IIE+   +   D +       + +          +   K H
Sbjct: 41  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 100

Query: 64  ----GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
               G+T    +   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 101 HGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQFMK 160

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P          + Y       + H AL D
Sbjct: 161 HLHYRIIDVSTVKELCRRWYP----------EEYEFAPKKAASHRALDD 199


>gi|221068763|ref|ZP_03544868.1| Exonuclease RNase T and DNA polymerase III [Comamonas testosteroni
           KF-1]
 gi|220713786|gb|EED69154.1| Exonuclease RNase T and DNA polymerase III [Comamonas testosteroni
           KF-1]
          Length = 202

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 56/189 (29%), Gaps = 49/189 (25%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + K+ +  +  D E TGL+   DRIIEI  V      +              +       
Sbjct: 22  LPKSDLNMVWLDCEMTGLNPDRDRIIEIAVVVSSSDLQI-------------RVEGPVFA 68

Query: 62  LHGITDEF----------------LKDKPSFSSI-----FSEFWDFFN----EQNAEWIA 96
           +H  +DE                 L DK   S+I      +    F      +       
Sbjct: 69  IHQ-SDELLGGMDAWNKGTHGKSGLIDKVKASTISEAEAEAALIAFLGKYVPKGKTPLCG 127

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
           ++   D  F+   + ++N      +  + TL    ++                 +     
Sbjct: 128 NSIGQDRRFMERYMPKLNNFFHYRNIDVSTLKELAKRWKPEAYT----------SFKKAQ 177

Query: 157 KHGALLDSH 165
           +H AL D H
Sbjct: 178 RHTALADVH 186


>gi|260831380|ref|XP_002610637.1| hypothetical protein BRAFLDRAFT_202599 [Branchiostoma floridae]
 gi|229296004|gb|EEN66647.1| hypothetical protein BRAFLDRAFT_202599 [Branchiostoma floridae]
          Length = 220

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 66/189 (34%), Gaps = 30/189 (15%)

Query: 9   KIVFDIETTGLDSKND-RIIEIGAVELL------DYSKTNRTFQVFL--CPNGRKNSPEA 59
            +  D+E T  ++ +  ++ E+    L          +  R     L      +      
Sbjct: 7   FVFLDLEATSCEASSRPKVTELCLAALHRSAVLSPGRRLPRVMDKLLLAVYPNKPIPGLV 66

Query: 60  LKLHGITDEFLKDKPSFSSIFSE-----FWDFFNEQN--AEWIAHNA-KFDVGFINAELQ 111
             L G+ +E L +  S  ++           F + Q      +AHN  KFD   +  EL 
Sbjct: 67  CDLTGLNNENLTE--SERAVLDASLVSAVCGFLHRQPQPVALVAHNGLKFDFPLLKTELL 124

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRND----------LNSLCKRYGITISHRSKHGAL 161
           ++N    +  R  D+L   R    S R+           L SL +RY ++   R  H A 
Sbjct: 125 KLNTRLPEGLRFCDSLLAFRETRESGRDGDEGETCRLGLLESLYQRY-VSQDPRCAHTAE 183

Query: 162 LDSHLLSDV 170
            D   L  V
Sbjct: 184 DDVLALIQV 192


>gi|17541516|ref|NP_500418.1| hypothetical protein M02B7.2 [Caenorhabditis elegans]
 gi|1572778|gb|AAB09126.1| Hypothetical protein M02B7.2 [Caenorhabditis elegans]
          Length = 266

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 10  IVFDIETTGLDSKND------RIIEIGAVE--LLDYSKTNRTFQVFLCP-NGRKNSPEAL 60
           +V D E T  D+          IIE   V+    D+S+  R F  ++ P    + +    
Sbjct: 62  LVLDFEATCQDNWKGPMHPVQEIIEFPVVQLSTADWSEI-RRFHQYIKPTEFPRLTSFCT 120

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQ 90
            L  I  E + +KP    + SEF  +  E 
Sbjct: 121 SLTRIIQEMVDEKPKLPEVLSEFDSWLKED 150


>gi|301782497|ref|XP_002926662.1| PREDICTED: oligoribonuclease, mitochondrial-like [Ailuropoda
           melanoleuca]
 gi|281353930|gb|EFB29514.1| hypothetical protein PANDA_016351 [Ailuropoda melanoleuca]
          Length = 237

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA---LKL 62
            R +  D+E TGLD + D+IIE+   +   D +       + +          +    + 
Sbjct: 41  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 100

Query: 63  HGIT--DEFLKDKP-SFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
           HG +   + +K+   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 101 HGKSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQFMK 160

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P          + Y       + H AL D
Sbjct: 161 HLHYRIIDVSTVKELCRRWYP----------EEYEFAPKKAASHRALDD 199


>gi|238020295|ref|ZP_04600721.1| hypothetical protein GCWU000324_00173 [Kingella oralis ATCC 51147]
 gi|237867275|gb|EEP68281.1| hypothetical protein GCWU000324_00173 [Kingella oralis ATCC 51147]
          Length = 192

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 23/164 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----SPEALKLH---G 64
            D+E TGL+ + D+IIE+  +            +VF      +            H   G
Sbjct: 10  LDMEMTGLNPETDKIIEVAMIITDKDLNVLAQSEVFAIHQSDEIMDNMDEWCTTTHARTG 69

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +T        + + +  +  DF  E    + +    +    D  F+   + R+       
Sbjct: 70  LTARVKASSYNEAEVEQKLLDFMGEWLPAKASPMCGNTIHQDRRFMVKYMPRLEAFFHYR 129

Query: 121 SRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + TL  +ARR HP       ++ K     +  +  H AL D
Sbjct: 130 NLDVSTLKELARRWHP-------AVYK----GVVKKGSHKALDD 162


>gi|170103617|ref|XP_001883023.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164641904|gb|EDR06162.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 391

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 17/167 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G+  +      +  V L+++        VF+    R       +  GI D
Sbjct: 119 KYLAIDCEMVGVGLEGAE-SSLARVSLVNFYG-AEMLDVFVRQRERVVDYR-TQWSGIRD 175

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             +    SF  +  +  D   ++    + H    D+  +      +   P   +R  DT 
Sbjct: 176 TDMMHAKSFEEVQKQVADLLEDR--ILVGHAVHNDLKAL------LLSHPWTSTR--DTQ 225

Query: 128 SIARR--KHPSSRNDLNSLCK-RYGITISHRSKHGALLDSHLLSDVY 171
             A +     S R  L +L K    + I    +H ++ D+     VY
Sbjct: 226 YYAYKGGLTKSKRIALRNLVKQELDLVI-QEGEHSSVTDARATMAVY 271


>gi|5817183|emb|CAB53690.1| hypothetical protein [Homo sapiens]
 gi|49065426|emb|CAG38531.1| DKFZP566E144 [Homo sapiens]
 gi|117646830|emb|CAL37530.1| hypothetical protein [synthetic construct]
 gi|208965440|dbj|BAG72734.1| REX2, RNA exonuclease 2 homolog [synthetic construct]
          Length = 237

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA---LKL 62
            R +  D+E TGLD + D+IIE+   +   D +       + +          +    + 
Sbjct: 41  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 100

Query: 63  HGIT--DEFLKDK-PSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
           HG +   + +K+   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 101 HGRSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMK 160

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P          + Y       + H AL D
Sbjct: 161 HLHYRIIDVSTVKELCRRWYP----------EEYEFAPKKAASHRALDD 199


>gi|71396663|ref|XP_802406.1| exonuclease [Trypanosoma cruzi strain CL Brener]
 gi|70862768|gb|EAN80960.1| exonuclease, putative [Trypanosoma cruzi]
          Length = 310

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 52/206 (25%), Gaps = 51/206 (24%)

Query: 10  IVFDIETTGLDSK---NDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRK-NSPEALKLHG 64
           +V D E T   +       IIE   V +     +    F  ++ P      +     L G
Sbjct: 96  LVCDFEATCDSASVAYPHEIIEFPVVCVDTAELRVVAEFHSYVRPTKNPRLTSFCTALTG 155

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI---------------------------AH 97
           IT   +   P    +   F  +  E                                  H
Sbjct: 156 ITQAQVDAAPRLPEVLRHFDLWLREVVYPLCRRWRKEHLEGLNKCLKASQKRRFVYDETH 215

Query: 98  NA---------------KFDVG-FINAELQRINKDPLDP--SRIIDTLSIARRKHPSSRN 139
           N                 +D+  F+       +     P   R ++              
Sbjct: 216 NPGWIDCERMICMVTDGPWDMRKFMYECSVVRDGHLFPPLFYRWVNVRHSFAEHFRMRPR 275

Query: 140 DLNSLCKRYGITISHRSKHGALLDSH 165
            LN + ++ G++  H   H  + DS 
Sbjct: 276 KLNDMLRKLGLSF-HGHPHSGIDDSR 300


>gi|38232702|ref|NP_938469.1| hypothetical protein DIP0068 [Corynebacterium diphtheriae NCTC
          13129]
 gi|38198960|emb|CAE48575.1| Hypothetical protein DIP0068 [Corynebacterium diphtheriae]
          Length = 102

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
            V D  TTG + + D IIE+ AV    Y K   ++   L P+
Sbjct: 31 FAVIDTGTTGFNKRYDHIIELAAVRADAYFKPVDSWHALLNPD 73


>gi|121997034|ref|YP_001001821.1| oligoribonuclease [Halorhodospira halophila SL1]
 gi|166216263|sp|A1WTK7|ORN_HALHL RecName: Full=Oligoribonuclease
 gi|121588439|gb|ABM61019.1| Exonuclease, RNase T and DNA polymerase III [Halorhodospira
           halophila SL1]
          Length = 183

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 56/167 (33%), Gaps = 29/167 (17%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR----KNSPEALKLHGIT- 66
            D+E TGLD   DRIIEI  V       T     V      R           + HG + 
Sbjct: 11  IDLEMTGLDPSRDRIIEIAVVVTDSNLDTLAEGPVLAIHQDRSLLDSMDEWNTRQHGRSG 70

Query: 67  -DEFLK-----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
             E ++     +  + + + +    +   + +    ++   D  F+   +  +  +    
Sbjct: 71  LTERVRASTVTEAEAEAQVLAFLKQYVPARTSPMCGNSICQDRRFLARWMPDL--EAYFH 128

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK----HGALLD 163
            R ID             + L  L +R+   ++   +    H AL D
Sbjct: 129 YRHIDV------------STLKELARRWSPEVAEGVRKSGNHLALDD 163


>gi|319948005|ref|ZP_08022182.1| oligoribonuclease [Dietzia cinnamea P4]
 gi|319438351|gb|EFV93294.1| oligoribonuclease [Dietzia cinnamea P4]
          Length = 222

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 64/171 (37%), Gaps = 27/171 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS---PEALKLH 63
           R +  D E TGLD+ ND+++EI A V   D +       + +  +        P    +H
Sbjct: 26  RIVWIDCEMTGLDTTNDKLVEIAALVTDSDLNVLGEGVDIVIHASDAALDAMVPVVRDMH 85

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINK 115
              G+T+E  +   + +       D+         +A    ++   D GF+  ++  +N 
Sbjct: 86  ASSGLTEEIRRSTVTVAEAEKAVLDYVRAWVPVAGSAPLAGNSIGTDRGFLARDMPELNS 145

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 R+ID  SI    RR +P            +G        H AL D
Sbjct: 146 YL--HYRMIDVSSIKELCRRWYPR---------IYFGQP-EKGMSHRALAD 184


>gi|294790670|ref|ZP_06755828.1| oligoribonuclease [Scardovia inopinata F0304]
 gi|294458567|gb|EFG26920.1| oligoribonuclease [Scardovia inopinata F0304]
          Length = 242

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 24/172 (13%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP---EALK 61
           K R I  D E TGLD  +D + E+  V    + +  +R   + + P+             
Sbjct: 20  KSRLIWIDCEMTGLDIDHDELCEVSVVPTDFNLTVLDRGIDLVIKPSQGALDHMGDFVRH 79

Query: 62  LH---GITDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR 112
           +H   G+ ++    L    +   +      F  E+    A    +    D  F++  +  
Sbjct: 80  MHTVSGLLEQMKEGLVLGQAEKQVIEYVRPFLPEEGQGKAHLAGNTIGSDKKFLDKFMPG 139

Query: 113 INKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +       +  + TL  ++RR +P          + Y         H AL D
Sbjct: 140 LMGLLHYRTIDVSTLKELSRRWYP----------QVYSNRPVKHGGHRALAD 181


>gi|325957458|ref|YP_004292870.1| DNA polymerase iii polc-type [Lactobacillus acidophilus 30SC]
 gi|325334023|gb|ADZ07931.1| DNA polymerase iii polc-type [Lactobacillus acidophilus 30SC]
          Length = 272

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 27/164 (16%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V  IETT L+   D+IIEI A +                   +    ++ +         
Sbjct: 19  VVQIETTDLNPTRDQIIEIAANKYRK------------NKFKKAFEWDSEE--------- 57

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DK       S+   F  +     + +   F   F+         +P   + I+D   + 
Sbjct: 58  -DKNDLRDALSQLKSFIGKD--TIVINCTAFFRPFMGNAFVNNLGEPFS-NDIVDIQRLF 113

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           R+        L+ + K Y ++ SH  K  A  D   + ++YIK+
Sbjct: 114 RKIENQKSAKLSQMIKFYNLSTSHNLK--ADEDIKSVEEIYIKL 155


>gi|126660881|ref|ZP_01731973.1| exonuclease [Cyanothece sp. CCY0110]
 gi|126617835|gb|EAZ88612.1| exonuclease [Cyanothece sp. CCY0110]
          Length = 252

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 20/117 (17%)

Query: 67  DEFLKDKPSFSS---------IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           + FL +K    +         I       +   +   +AHN  FD   I           
Sbjct: 17  NAFLINKIPIETTQNTVMQTYIIDSLQRAYQLAD-VVVAHNKDFDQPLILNSDW----AG 71

Query: 118 LDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                 + T        P     + DL SL + YG+ ++    H A+ D  LL++V+
Sbjct: 72  FWEKPWLCTYKDF-ELFPDAYPGKRDLISLAQFYGVGVN--ISHRAINDCLLLAEVF 125


>gi|158339338|ref|YP_001520515.1| exonuclease [Acaryochloris marina MBIC11017]
 gi|158309579|gb|ABW31196.1| exonuclease [Acaryochloris marina MBIC11017]
          Length = 159

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 9/139 (6%)

Query: 9   KIVFDIETTGLD-----SKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKN-SPEALK 61
            ++ D+E T  +      K    IEIGAV +     +    F VF+ P    N +    +
Sbjct: 11  YLIVDLEATCCNTFSIPHKETETIEIGAVIIESVGLEIIDEFTVFIKPIRHPNLTDFCTE 70

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           L  I    L+D P+F      F  +F + +N+ + +    +D   +  E +         
Sbjct: 71  LTTIKQTDLEDAPTFPQAVGTFKRWFEQYENSVFCSW-GDYDKNQLERESKYHKIPYPMG 129

Query: 121 SRIIDTLSIARRKHPSSRN 139
               +          + ++
Sbjct: 130 GEHFNLKKQFSLALRTKKH 148


>gi|302868577|ref|YP_003837214.1| exonuclease RNase T and DNA polymerase III [Micromonospora
           aurantiaca ATCC 27029]
 gi|302571436|gb|ADL47638.1| Exonuclease RNase T and DNA polymerase III [Micromonospora
           aurantiaca ATCC 27029]
          Length = 214

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 20/149 (13%)

Query: 10  IVFDIE-TTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCP-----NGRKNSPEALKL 62
           +  D+E T G D   + I+EI  V       + +      + P        +  P     
Sbjct: 14  VGVDLEGTGGQDRDEEAILEIALVPLHHGTPQPDAALATLVNPARPLDYRTRLPP----- 68

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G++   L+  P+ + +  +  D    +    I H+   D       L R     L P+ 
Sbjct: 69  -GVSRAALRAAPTLADLERDVTDRVTGR--YLIGHHVAVDW-----RLLRRQLPRLRPAG 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGIT 151
           ++DTL ++R     + + L ++  R G+T
Sbjct: 121 LLDTLRLSRAIAAGAGHSLTTVIDRLGLT 149


>gi|260822769|ref|XP_002606774.1| hypothetical protein BRAFLDRAFT_59133 [Branchiostoma floridae]
 gi|229292118|gb|EEN62784.1| hypothetical protein BRAFLDRAFT_59133 [Branchiostoma floridae]
          Length = 180

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 32/173 (18%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL------- 60
           R +  D+E TGLD  +  IIE+  +   D             P+   + P+A+       
Sbjct: 4   RMVWVDLEMTGLDLDSCHIIEMACLITDDDLNVVAE-----APDLVIHQPDAVMDTMNDW 58

Query: 61  --KLH---GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQ 111
             + H   G+T+   + + S  +   E   F  +           ++   D  F+   + 
Sbjct: 59  CKEHHGKSGLTEAVRRSELSLQAAEYEMLSFVRQYTPPGVCPLAGNSVHVDKKFLEKYMP 118

Query: 112 RINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +           + T+  + RR +P            Y ++    + H AL D
Sbjct: 119 QFMNHLHYRIIDVSTIKELCRRWYPED----------YNVSPQKSATHRALED 161


>gi|182438132|ref|YP_001825851.1| hypothetical protein SGR_4339 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178466648|dbj|BAG21168.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 190

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 19/166 (11%)

Query: 11  VFDIETT---GLDSKN--DRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           V D+E T   G       + IIEIG   V+L    +  +  ++ + P   K SP   +L 
Sbjct: 13  VVDVEATCWDGQPPPGQVNEIIEIGLTVVDLRAGRRLAKH-RLLVRPARSKVSPFCTELT 71

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G+T   +     F+          +       A    +D      + +  + +     R 
Sbjct: 72  GLTQAEVDGGLPFAEACR-VLAVEHRTGQLPWASWGDYDRNQFTRQCRATDAEYPFGQRH 130

Query: 124 ID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            +     T S   R+ P          +  G+ +  R  H    D+
Sbjct: 131 TNAKVAFTASYGLRRRPGM----AQALEVAGLPLEGR-HHRGDDDA 171


>gi|224496106|ref|NP_056338.2| oligoribonuclease, mitochondrial precursor [Homo sapiens]
 gi|55637001|ref|XP_508768.1| PREDICTED: oligoribonuclease, mitochondrial isoform 2 [Pan
           troglodytes]
 gi|116242694|sp|Q9Y3B8|ORN_HUMAN RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA
           exonuclease 2 homolog; AltName: Full=Small fragment
           nuclease; Flags: Precursor
 gi|62897961|dbj|BAD96920.1| small fragment nuclease variant [Homo sapiens]
 gi|79158846|gb|AAI07888.1| REXO2 protein [Homo sapiens]
 gi|85397890|gb|AAI05025.1| Small fragment nuclease [Homo sapiens]
 gi|85397892|gb|AAI05027.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Homo sapiens]
 gi|119587654|gb|EAW67250.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_b
           [Homo sapiens]
 gi|189065256|dbj|BAG34979.1| unnamed protein product [Homo sapiens]
 gi|219520365|gb|AAI43702.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Homo sapiens]
          Length = 237

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLH 63
            R +  D+E TGLD + D+IIE+   +   D +       + +          +   K H
Sbjct: 41  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 100

Query: 64  ----GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
               G+T    +   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 101 HGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMK 160

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P          + Y       + H AL D
Sbjct: 161 HLHYRIIDVSTVKELCRRWYP----------EEYEFAPKKAASHRALDD 199


>gi|256824739|ref|YP_003148699.1| oligoribonuclease (3'->5' exoribonuclease) [Kytococcus sedentarius
           DSM 20547]
 gi|256688132|gb|ACV05934.1| oligoribonuclease (3'->5' exoribonuclease) [Kytococcus sedentarius
           DSM 20547]
          Length = 223

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 24/174 (13%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG----RKNSP 57
           R    R +  D E TGL+   D ++EI A V   + +      QV + P+        +P
Sbjct: 23  RALDDRIVWIDCEMTGLEP-TDVLVEIAALVTDFELNVLGEGVQVVIRPDDLGALEGLNP 81

Query: 58  EALKLH---GITDE---FLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAEL 110
              K+H   G+ +E    +    +   +      +      A    ++   D  F+ AE+
Sbjct: 82  VVQKMHTASGLLEEIQHGVSAAEAERQVLEYVRQWVPVAGKAPLAGNSIATDRRFLAAEM 141

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             ++         + ++  ++RR  P +  +                 H AL D
Sbjct: 142 PELDGYLHYRLIDVSSVKELSRRWFPRAWYN----------APEKAGGHRALAD 185


>gi|56707385|ref|YP_169281.1| oligoribonuclease [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110669856|ref|YP_666413.1| oligoribonuclease [Francisella tularensis subsp. tularensis FSC198]
 gi|224456460|ref|ZP_03664933.1| oligoribonuclease [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370915|ref|ZP_04986920.1| oligoribonuclease [Francisella tularensis subsp. tularensis FSC033]
 gi|254874223|ref|ZP_05246933.1| oligoribonuclease [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|81820821|sp|Q5NI61|ORN_FRATT RecName: Full=Oligoribonuclease
 gi|123169637|sp|Q14JL3|ORN_FRAT1 RecName: Full=Oligoribonuclease
 gi|56603877|emb|CAG44861.1| Oligoribonuclease [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110320189|emb|CAL08244.1| Oligoribonuclease [Francisella tularensis subsp. tularensis FSC198]
 gi|151569158|gb|EDN34812.1| oligoribonuclease [Francisella tularensis subsp. tularensis FSC033]
 gi|254840222|gb|EET18658.1| oligoribonuclease [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158524|gb|ADA77915.1| oligoribonuclease [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 178

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 23/163 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCPNG--RKNSPEALKLH---G 64
            D+E TGLD  + +I EI A+            +      P+      +   +K H   G
Sbjct: 10  IDLEMTGLDVDSCKITEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETG 69

Query: 65  IT----DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +T    D  +  + +   I      F   Q++    ++   D  F+   +  I++     
Sbjct: 70  LTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYR 129

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              + TL +  +     +            +   ++ H AL D
Sbjct: 130 MLDVTTLKLLNQYWGDGK------------SFEKKNTHKALDD 160


>gi|115446061|ref|NP_001046810.1| Os02g0465500 [Oryza sativa Japonica Group]
 gi|47496882|dbj|BAD19846.1| putative oligoribonuclease [Oryza sativa Japonica Group]
 gi|47497504|dbj|BAD19557.1| putative oligoribonuclease [Oryza sativa Japonica Group]
 gi|113536341|dbj|BAF08724.1| Os02g0465500 [Oryza sativa Japonica Group]
 gi|215687346|dbj|BAG91911.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 247

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 24/171 (14%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNS--PEALK 61
           +M  +  D+E TGLD   DRI+EI  +   D   T +     + +           E  K
Sbjct: 65  QMPLVWIDLEMTGLDVAKDRILEIACIIT-DGKLTKQIEGPDLVINQKKDLLDNMDEWCK 123

Query: 62  LH----GITDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKF-DVGFINAELQRI 113
            H    G+T   L+   S     ++  DF  +    +   IA N+ + D+ F+   + ++
Sbjct: 124 THHAASGLTQRVLQSTISEHDAETQVLDFVKKHVGSSPPLIAGNSVYVDLLFLKNYMPQL 183

Query: 114 NKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                     + + +++  R +P  R            T     KH A+ D
Sbjct: 184 AAIFSHVIVDVSSIMALCIRWYPKERKR----------TPQKGKKHRAMND 224


>gi|126165254|ref|NP_001075204.1| oligoribonuclease, mitochondrial precursor [Bos taurus]
 gi|158512836|sp|A2VE52|ORN_BOVIN RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA
           exonuclease 2 homolog; AltName: Full=Small fragment
           nuclease; Flags: Precursor
 gi|126010762|gb|AAI33576.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Bos taurus]
 gi|296480277|gb|DAA22392.1| oligoribonuclease, mitochondrial precursor [Bos taurus]
          Length = 237

 Score = 52.1 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA---LKL 62
            R +  D+E TGLD + D+IIE+   +   D +       + +          +    + 
Sbjct: 41  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 100

Query: 63  HGIT--DEFLKDKP-SFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
           HG +   + +K+   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 101 HGKSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQFMK 160

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P          + Y       + H AL D
Sbjct: 161 HLHYRIIDVSTVKELCRRWYP----------EEYEFAPKKAASHRALDD 199


>gi|281343118|gb|EFB18702.1| hypothetical protein PANDA_015684 [Ailuropoda melanoleuca]
          Length = 334

 Score = 52.1 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 69/196 (35%), Gaps = 38/196 (19%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAV------------------ELLDYSKTNRTFQVFL 48
              I  D+E TGL S   ++ E+  +                   +    +      + +
Sbjct: 32  QTLIFLDLEATGLPSSQPKVTELCLLAVHRCALESSPTPEGQPPTVPPPPRVVDKLSLCV 91

Query: 49  CPNGRKNSPEALKLHGITDEFLK--DKPSF-SSIFSEFWDFFNEQNAE--WIAHN-AKFD 102
            P G+  SPEA K+ G++   L    +  F + + +    F   Q      +AHN  ++D
Sbjct: 92  AP-GKACSPEASKITGLSTAVLAAHGRQRFDADLANLLQAFLQRQPQPWCLVAHNGNRYD 150

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGIT 151
              + AEL  +     LD +  +D+++  +            P     L S+  R YG  
Sbjct: 151 FPLLQAELAVLGLASVLDSAFCVDSIAALKALEHADSPSEHGPRKSYSLGSIYTRLYGQA 210

Query: 152 ISHRSKHGALLDSHLL 167
                 H A  D   L
Sbjct: 211 PPD--SHMAESDVLAL 224


>gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
 gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
          Length = 959

 Score = 52.1 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 34/137 (24%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG D  NDRI+ +            R ++ +  P    N+ E   L         
Sbjct: 392 FDTETTGFDIFNDRIVGLSLA--------VRPYEAWYIPFNESNTAEYAAL--------- 434

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                          F +     I  N KFD+  +     R+  +     R+ DT+ +  
Sbjct: 435 -----------IRPLFADGKIAKIGQNIKFDLMVL----ARLGVEI--RGRLYDTMILHY 477

Query: 132 RKHPSSRNDLNSLCKRY 148
              P SR+++++L  RY
Sbjct: 478 LLDPESRHNMDALAMRY 494


>gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
 gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
          Length = 949

 Score = 52.1 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 34/150 (22%)

Query: 1   MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M+  N M  + + FD ETT L+              +D      +F        RK    
Sbjct: 368 MLAWNLMSQKAVAFDTETTTLN-------------EMDAELVGLSFSY------RKGLAY 408

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            + L     E   +      I   F +FF +++   +AHN KFD   +      +     
Sbjct: 409 YIPL----SEDRSEAIQTLEI---FREFFEKEDVSKVAHNLKFDYKILQQYGFSLKGLLF 461

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                 DT+      +P  ++ ++ L + Y
Sbjct: 462 ------DTMIAHYLLNPDGKHVIDYLSEIY 485


>gi|301781328|ref|XP_002926073.1| PREDICTED: three prime repair exonuclease 1-like [Ailuropoda
           melanoleuca]
          Length = 338

 Score = 52.1 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 69/196 (35%), Gaps = 38/196 (19%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAV------------------ELLDYSKTNRTFQVFL 48
              I  D+E TGL S   ++ E+  +                   +    +      + +
Sbjct: 36  QTLIFLDLEATGLPSSQPKVTELCLLAVHRCALESSPTPEGQPPTVPPPPRVVDKLSLCV 95

Query: 49  CPNGRKNSPEALKLHGITDEFLK--DKPSF-SSIFSEFWDFFNEQNAE--WIAHN-AKFD 102
            P G+  SPEA K+ G++   L    +  F + + +    F   Q      +AHN  ++D
Sbjct: 96  AP-GKACSPEASKITGLSTAVLAAHGRQRFDADLANLLQAFLQRQPQPWCLVAHNGNRYD 154

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGIT 151
              + AEL  +     LD +  +D+++  +            P     L S+  R YG  
Sbjct: 155 FPLLQAELAVLGLASVLDSAFCVDSIAALKALEHADSPSEHGPRKSYSLGSIYTRLYGQA 214

Query: 152 ISHRSKHGALLDSHLL 167
                 H A  D   L
Sbjct: 215 PPD--SHMAESDVLAL 228


>gi|320007392|gb|ADW02242.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           flavogriseus ATCC 33331]
          Length = 199

 Score = 52.1 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 64/182 (35%), Gaps = 17/182 (9%)

Query: 11  VFDIETT---GLDSKN--DRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           V D+E T   G       + IIEIG   V+L    +++R  +V + P     S    +L 
Sbjct: 10  VMDVEATCWDGQPPPGSVNEIIEIGLTVVDLSAGRRSSRH-RVLVRPVRSAVSGFCTELT 68

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G+T   +    +F+       + +      W +    +D      + +            
Sbjct: 69  GLTQAEVDRGVTFAEACRILVEEYGAGERPWASW-GDYDRRQFARQSRADGVAYPFGFPT 127

Query: 124 IDTLSIARRKHPSSRNDL------NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             T + A+    +    L      +   +  G+ +  R  H    D+  ++ + + ++  
Sbjct: 128 ERTHTNAKAVF-AESYGLRRKPGMDQALRIAGLPLEGR-HHRGEDDAWNIAALVLDLVGR 185

Query: 178 GS 179
           G+
Sbjct: 186 GA 187


>gi|77164204|ref|YP_342729.1| hypothetical protein Noc_0680 [Nitrosococcus oceani ATCC 19707]
 gi|76882518|gb|ABA57199.1| hypothetical protein Noc_0680 [Nitrosococcus oceani ATCC 19707]
          Length = 110

 Score = 52.1 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 9   KIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGI 65
            +V D ETTGL  +N    I+ +G   + +   +    F+  L    R+   EA  +HGI
Sbjct: 18  YVVLDTETTGLPEENGLPDIVTLGLTAVKNREISESVEFETRL---QRRILEEAQSIHGI 74

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNA 92
           T+       SF S + +  D+  ++ +
Sbjct: 75  TNIQTARFESFDSRWHQITDYLKDERS 101


>gi|311263942|ref|XP_003129926.1| PREDICTED: oligoribonuclease, mitochondrial-like [Sus scrofa]
          Length = 237

 Score = 52.1 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA---LKL 62
            R +  D+E TGLD + D+IIE+   +   D +       + +          +    + 
Sbjct: 41  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 100

Query: 63  HGIT--DEFLKDKP-SFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
           HG +   + +K+   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 101 HGKSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQFMK 160

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P          + Y       + H AL D
Sbjct: 161 HLHYRIIDVSTVKELCRRWYP----------EEYEFAPKKAASHRALDD 199


>gi|119499117|ref|XP_001266316.1| RNA binding protein (Arp), putative [Neosartorya fischeri NRRL 181]
 gi|119414480|gb|EAW24419.1| RNA binding protein (Arp), putative [Neosartorya fischeri NRRL 181]
          Length = 613

 Score = 52.1 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 86/263 (32%), Gaps = 53/263 (20%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAVELLDYSKTNRTFQ---VFLCPNGRKNSPE 58
           R IV  + TT    G+    D   +IE+G + L   +KT        V + P     +P 
Sbjct: 13  RYIVIHVATTCDEHGVYVTKDSAEVIELGWILL--DTKTCEELHRESVLVKPVNTPITPL 70

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115
              L  +T E ++   +F    + F  F  E     I+ N +F    +++   R+     
Sbjct: 71  CTSLTTLTWEHVRSAGTFRDAINRFDAFAQEH---LISKNLEFAFVTLDSWDLRVQLPRE 127

Query: 116 ---------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGI-------TI 152
                      L  SR  D  +  +R         P   + L+++C    +        I
Sbjct: 128 ARDKAVVLPPYLQHSRTFDLRTEYQRWQTHHPESLPFGPSSLSNICAALEVEPVQSSAPI 187

Query: 153 SHR-SKH----------GALLDSHLLSDVYIKMMVGGSQINFG--FKTNEDRFFKEEKKT 199
            H    H           A+ ++  L+ V   ++      +      T       + +  
Sbjct: 188 KHNLPFHLQALAPASPRRAMEEAITLARVLRGLIRKSQPPHEHPEILTRPMDARADVRAF 247

Query: 200 VPNISLLKRDKPLFTRITKEELD 222
           +   S +     L    T+ EL+
Sbjct: 248 LTERSKVLHLSGLPHDTTQSELE 270


>gi|121719217|ref|XP_001276323.1| RNA binding protein (Arp), putative [Aspergillus clavatus NRRL 1]
 gi|119404521|gb|EAW14897.1| RNA binding protein (Arp), putative [Aspergillus clavatus NRRL 1]
          Length = 613

 Score = 52.1 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 86/263 (32%), Gaps = 53/263 (20%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAVELLDYSKTNRTFQ---VFLCPNGRKNSPE 58
           R IV  + TT    G+    D   +IE+G + L   +KT        V + P     +P 
Sbjct: 13  RYIVIHVATTCDEHGVYVTKDSAEVIELGWILL--DTKTCEELHRESVLVKPVNTPITPL 70

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115
              L  +T E ++   +F    + F  F  E     I+ N +F    +++   R+     
Sbjct: 71  CTSLTTLTWEHVRSAGTFRDAINRFDAFAQEH---LISKNLEFAFVTLDSWDLRVQLPRE 127

Query: 116 ---------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGI-------TI 152
                      L  SR  D  +  +R         P   + L+++C    +        I
Sbjct: 128 ARDKAVVLPPYLQHSRTFDLRTEYQRWQTHHPESLPFGPSSLSNICAALEVEPVQSSAPI 187

Query: 153 SHR-SKH----------GALLDSHLLSDVYIKMMVGGSQINFG--FKTNEDRFFKEEKKT 199
            H    H           A+ ++  L+ V   ++      +      T       + +  
Sbjct: 188 KHNLPFHLQALAPASPRRAMEEAITLARVLRGLIRKSQPPHEHPEILTRPMDARADVRAF 247

Query: 200 VPNISLLKRDKPLFTRITKEELD 222
           +   S +     L    T+ EL+
Sbjct: 248 LTERSKVLHLSGLPHDTTQSELE 270


>gi|70985240|ref|XP_748126.1| RNA binding protein (Arp) [Aspergillus fumigatus Af293]
 gi|66845754|gb|EAL86088.1| RNA binding protein (Arp), putative [Aspergillus fumigatus Af293]
 gi|159125951|gb|EDP51067.1| RNA binding protein (Arp), putative [Aspergillus fumigatus A1163]
          Length = 613

 Score = 52.1 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 86/263 (32%), Gaps = 53/263 (20%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAVELLDYSKTNRTFQ---VFLCPNGRKNSPE 58
           R IV  + TT    G+    D   +IE+G + L   +KT        V + P     +P 
Sbjct: 13  RYIVIHVATTCDEHGVYVTKDSAEVIELGWILL--DTKTCEELHRESVLVKPVNTPITPL 70

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115
              L  +T E ++   +F    + F  F  E     I+ N +F    +++   R+     
Sbjct: 71  CTSLTTLTWEHVRSAGTFRDAINRFDAFAQEH---LISKNLEFAFVTLDSWDLRVQLPRE 127

Query: 116 ---------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGI-------TI 152
                      L  SR  D  +  +R         P   + L+++C    +        I
Sbjct: 128 ARDKAVVLPPYLQHSRTFDLRTEYQRWQTHHPESLPFGPSSLSNICAALEVEPVQSSAPI 187

Query: 153 SHR-SKH----------GALLDSHLLSDVYIKMMVGGSQINFG--FKTNEDRFFKEEKKT 199
            H    H           A+ ++  L+ V   ++      +      T       + +  
Sbjct: 188 KHNLPFHLQALAPASPRRAMEEAITLARVLRGLIRKSQPPHEHPEILTRPMDARADVRAF 247

Query: 200 VPNISLLKRDKPLFTRITKEELD 222
           +   S +     L    T+ EL+
Sbjct: 248 LTERSKVLHLSGLPHDTTQSELE 270


>gi|321476303|gb|EFX87264.1| hypothetical protein DAPPUDRAFT_312570 [Daphnia pulex]
          Length = 252

 Score = 52.1 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 67/182 (36%), Gaps = 26/182 (14%)

Query: 9   KIVFDIETTGLDSKND---RIIEIGAVELL-------DYSK---TNRTFQVFLCPNGRKN 55
            +  D+ETTG  +  D   RI E+    +        + SK         + + P+   +
Sbjct: 45  YVFLDLETTGFITTEDPICRITELSMWGIEREQFLNCNGSKMPRITNRLNMCVDPSKEIH 104

Query: 56  SPEALKLHGITDEFLKDKPSFSS-IFSEFWDFFN--EQNAEWIAHN-AKFDVGFINAELQ 111
              A K   + +  L  +  F   + +    F N  ++    IAH   KFD   + +E+ 
Sbjct: 105 PMAATKS-KLDNLNLSHQSPFDEDVANTVLSFLNRLKKPMCMIAHYGFKFDFPVLKSEIA 163

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSR-----NDLNSLCKR-YGITISHRSKHGALLDSH 165
            + KD  +     D+L + R     ++       L ++ +R Y         H A  D  
Sbjct: 164 NVGKDFSEDVFCADSLPVFRTCQSLAQGVPYSYTLENVYRRIYN--NQPEVMHEAEADVK 221

Query: 166 LL 167
           +L
Sbjct: 222 ML 223


>gi|311245639|ref|XP_003121906.1| PREDICTED: apoptosis-enhancing nuclease-like [Sus scrofa]
          Length = 325

 Score = 52.1 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 54/184 (29%), Gaps = 29/184 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIG---AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + +  D E  G   +  R+ E+     V           +  ++ P          +  G
Sbjct: 109 KCVAIDCEMVGTGPRG-RVSELARCSVVSYYGDVL----YDKYIRPE-MPIVDYRTRWSG 162

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT + ++    F     E       +    + H    D   +     R         +  
Sbjct: 163 ITRQHMRKAIPFQVAQKEILKLL--KGKVVVGHALHNDFQALKYVHPR--------GQTR 212

Query: 125 DT-----LSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMV 176
           DT     L      H  +R  L  L  +     I +     H ++ D+    ++Y +++ 
Sbjct: 213 DTTYVPNLLSQPGLHTRTRVSLKDLALQLLHKKIQVGQHG-HSSVEDAVTAMELY-RLVE 270

Query: 177 GGSQ 180
              +
Sbjct: 271 VQWE 274


>gi|327329611|gb|EGE71367.1| oligoribonuclease [Propionibacterium acnes HL096PA3]
          Length = 202

 Score = 52.1 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 22/164 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSP---EALKLH---G 64
            D E TGLD  +D +IE+ A+              V + P  +           +H   G
Sbjct: 5   IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMHTTSG 64

Query: 65  I---TDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +    D+ L    +   +      +  +   A    +    D  F+  ++ ++       
Sbjct: 65  LLAELDKGLTMAQAQDQVLDYIRTYVPQAGKAPLAGNTIGTDRSFLAKDMPKLESYVHYR 124

Query: 121 SRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + ++  +ARR +P          + +G +   +  H AL D
Sbjct: 125 NVDVSSIKELARRWYP----------RAFGHSPEKQGNHRALAD 158


>gi|312381274|gb|EFR27059.1| hypothetical protein AND_06458 [Anopheles darlingi]
          Length = 379

 Score = 52.1 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 20/147 (13%)

Query: 3   RKNKMRKIVFDIETTGL---DSKNDRIIEIGAVEL---------LDYSKTNRTFQVFLCP 50
             N       D+ETTGL   +    +I E+  V            +  +      +   P
Sbjct: 1   MTNIKSFAFLDLETTGLPEYEFSRTKITELSVVACSRQHLLESNSELPRVVHKLSLCFNP 60

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFS----SIFSEFWDFFNEQNAEWIAHNA-KFDVGF 105
             R  S ++ +  G+ ++ L+ +  F      +F  F     ++    +AHN  +FD   
Sbjct: 61  F-RMISHQSSQSTGLYNDLLQHESKFDGHAGELFKMFLSRL-QKPICLVAHNGYRFDFIL 118

Query: 106 INAELQRINKD-PLDPSRIIDTLSIAR 131
           +  +L  I           IDT+   R
Sbjct: 119 LKKQLTSIGISLEAGTVVCIDTIPAFR 145


>gi|170573706|ref|XP_001892569.1| exonuclease family protein [Brugia malayi]
 gi|158601787|gb|EDP38593.1| exonuclease family protein [Brugia malayi]
          Length = 193

 Score = 52.1 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 8/119 (6%)

Query: 3   RKNKMRKIVFDIETT---GLDSKND-RIIEIGAVE--LLDYSKTNRTFQVFLCPNGRKN- 55
           ++N    ++ D E T   G+       IIE   ++    +  +  R F  ++ P  R   
Sbjct: 57  KQNFDYFLILDFEATCEEGMKIMPHQEIIEFPVIQLSGKNLEEVGR-FHRYVRPTERPIL 115

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           +     L GI  E ++ + S   + + F ++  + N     H+ K    F+ +    + 
Sbjct: 116 TSFCTDLTGIVQETVESQESLPEVLNAFDEWLLDLNLINTDHSMKSLFTFVTSGDWDLG 174


>gi|121607325|ref|YP_995132.1| oligoribonuclease [Verminephrobacter eiseniae EF01-2]
 gi|121551965|gb|ABM56114.1| Exonuclease, RNase T and DNA polymerase III [Verminephrobacter
           eiseniae EF01-2]
          Length = 195

 Score = 52.1 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 33/177 (18%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK--------TNRTFQVFLCP----- 50
           K+    +  D E TGL    DR++EI  V      +             Q +L       
Sbjct: 17  KSDQNLVWLDCEMTGLTPDTDRLLEIAVVVTGPNLEPRIAGPVLVIHQSQEWLDKMDAWN 76

Query: 51  ---NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
              +GR    + +K  GIT     +  +   I +    +  +       ++   D  F+ 
Sbjct: 77  KGTHGRSGLIDKVKASGIT-----EAQAEQQIIAFLSQYVPKGQVPMCGNSIGQDRRFLA 131

Query: 108 AELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  + +     +  + TL  +A+R  P        +C  +        KH AL D
Sbjct: 132 RYMPELERFFHYRNVDVSTLKELAKRWKPQ-------VCAGFK----KAQKHTALAD 177


>gi|221194706|ref|ZP_03567763.1| DNA polymerase III [Atopobium rimae ATCC 49626]
 gi|221185610|gb|EEE18000.1| DNA polymerase III [Atopobium rimae ATCC 49626]
          Length = 323

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 59/185 (31%), Gaps = 45/185 (24%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEAL---------- 60
            DIETT        II IG             F+ + L P      P A           
Sbjct: 136 IDIETTSRFPDQGYIINIG-------------FEFWNLGPETVPVDPHAAYFGMPELYRE 182

Query: 61  ------KLHGITDEFLKDKPSF---SSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAEL 110
                 ++H IT + L  +P F    +          +    ++AHNA F D  F+    
Sbjct: 183 KGVPLSEIHHITWQDLDGRPLFRSDKAAQKALLTAMKK--VPFMAHNAAFEDSWFMLHID 240

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRN--------DLNSLCKRYGITISHR-SKHGAL 161
                        IDT  I RR  P  R+         L +  +R G   +H   +H  L
Sbjct: 241 GYAEAHKEGKIVPIDTREICRRLDPEFRSLLPASRPASLENWARRRGTLAAHEVEQHLGL 300

Query: 162 LDSHL 166
            D  L
Sbjct: 301 DDVDL 305


>gi|62901864|gb|AAY18883.1| CGI-114 [synthetic construct]
          Length = 229

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLH 63
            R +  D+E TGLD + D+IIE+   +   D +       + +          +   K H
Sbjct: 33  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 92

Query: 64  ----GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
               G+T    +   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 93  HGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMK 152

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P          + Y       + H AL D
Sbjct: 153 HLHYRIIDVSTVKELCRRWYP----------EEYEFAPKKAASHRALDD 191


>gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5]
          Length = 958

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 34/137 (24%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTG D  NDRI+          S     F+ +  P   +N+ E  ++         
Sbjct: 391 FDTETTGFDIFNDRIV--------GMSLAVNPFEAWYIPFKEENTAEYTEI--------- 433

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                          F       I  N KFD+  +    +++  +     R  DT+ +  
Sbjct: 434 -----------VRPLFENDRIAKIGQNIKFDLMVL----RQLGLEI--RGRKYDTMILHY 476

Query: 132 RKHPSSRNDLNSLCKRY 148
              P SR+++N+L ++Y
Sbjct: 477 LLDPESRHNMNALAEKY 493


>gi|194221352|ref|XP_001916137.1| PREDICTED: similar to Three prime repair exonuclease 1 (3-5
           exonuclease TREX1) (DNase III) [Equus caballus]
          Length = 362

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 38/196 (19%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAV------------------ELLDYSKTNRTFQVFL 48
              I  D+E TGL     ++ E+  +                   +    +      + +
Sbjct: 60  QTLIFLDLEATGLPFSQPKVTELCLLAVHRCALESSPNPHGPPPTVPPPPRVVDKLSLCV 119

Query: 49  CPNGRKNSPEALKLHGITDEFL--KDKPSF-SSIFSEFWDFFNEQNAE--WIAHN-AKFD 102
            P G+  SP A  + G++   L    +  F + + +    F   Q      +AHN  ++D
Sbjct: 120 AP-GKACSPAASDITGLSTGMLTAHGRQRFDADLVNLLRAFLQRQPKPWCLVAHNGDRYD 178

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGIT 151
              + AEL  +     LD +  +D+++  +            P     L S+  R YG  
Sbjct: 179 FPLLQAELAVLGLTSALDGAFCVDSIAALKALEQAGSPSEHGPRKSYSLGSIYTRLYGKA 238

Query: 152 ISHRSKHGALLDSHLL 167
                 H A  D   L
Sbjct: 239 PPD--SHTAEGDVLAL 252


>gi|227549657|ref|ZP_03979706.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078234|gb|EEI16197.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 98

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 13/105 (12%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL----CPNGRKNSPEAL 60
           +    +   + TTG+     R++ I AV   D       F         P  R N     
Sbjct: 3   DNFPYVAVSVVTTGIHPSTGRLLTIDAVTFDDDGAIGEEFHSVFSTGSDPGPRHN----- 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
             HG+        P FS          +++    + H+A    GF
Sbjct: 58  --HGLEPGDFAQAPRFSRHLKTLDRLIDDR--TLVLHDAPLAWGF 98


>gi|194206310|ref|XP_001917567.1| PREDICTED: similar to interferon stimulated exonuclease gene
           20kDa-like 1 [Equus caballus]
          Length = 323

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 53/173 (30%), Gaps = 22/173 (12%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G      R+ E+    ++ Y   +  +  ++ P          +  GIT 
Sbjct: 109 KCVAIDCEMVGTGPHG-RVSELARCSVVSYHG-DVLYDKYVRPE-MPIVDYRTRWSGITR 165

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT- 126
           + ++    F     E       +    + H    D   +     R        S+  DT 
Sbjct: 166 QHMRKAIPFQVAQKEILKLL--KGKVVVGHALHNDFQALKYVHPR--------SQTRDTT 215

Query: 127 ----LSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYI 172
               L      H  +R  L  L  +     I +     H ++ D+    ++Y 
Sbjct: 216 YVPNLLNQPGLHTRTRVSLKDLALQLLHKKIQVGQHG-HSSVEDAVTAMELYQ 267


>gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
 gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
          Length = 894

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 67/221 (30%), Gaps = 33/221 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET  LD    R++ +               + +  P G ++            E 
Sbjct: 315 VAVDTETDSLDPLKARLVGVSLCTEDG--------EAWYLPCGHRDEAG---------EL 357

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  +     +               I HN KFD+  ++A     N        + DT+  
Sbjct: 358 VAGQLPLDRLIEFLRPVLEHPGTTKIGHNLKFDLAVLSAPC---NGGIQLACPLHDTMIG 414

Query: 130 ARRKHPSSR-NDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKM-MVGGSQINFGF 185
           A    P  R   L+ LC    + ++      H     +    D + ++ +      +   
Sbjct: 415 AWLLAPDRRTYKLDDLCGEINLRMTSYEEVTH-----ADKSEDAFCRVPLEAAKNYSCED 469

Query: 186 KTNEDRFFKEEKKTVPNISLLKR----DKPLFTRITKEELD 222
                R ++E+   +    LL      + PL   +   E +
Sbjct: 470 VYGALRLYQEQLPQLERADLLALLREVEGPLVPVLAAMERE 510


>gi|302865700|ref|YP_003834337.1| exonuclease RNase T and DNA polymerase III [Micromonospora
           aurantiaca ATCC 27029]
 gi|302568559|gb|ADL44761.1| Exonuclease RNase T and DNA polymerase III [Micromonospora
           aurantiaca ATCC 27029]
          Length = 196

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 27/167 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS--PEALK-LH---G 64
            D E TGLD + D +IE+ A+    D +       V +  +       PE ++ +H   G
Sbjct: 8   IDCEMTGLDLRRDALIEVAALVTDPDLNVLGDGVDVVIHADDEALDGMPEIVRTMHAKSG 67

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +T+E      + +       D+      + + A    ++   D GF+  ++ R+  D   
Sbjct: 68  LTEEVRLSTVTLAEAEDMVLDYVTSYVKDPRTAPLCGNSIATDRGFLARDMTRL--DAHL 125

Query: 120 PSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             R+ID  SI    RR +P            +G        H AL D
Sbjct: 126 HYRMIDVSSIKELCRRWYPRV---------YFGQP-QKGLAHRALAD 162


>gi|17548214|ref|NP_508415.1| Cell-death-Related Nuclease family member (crn-4) [Caenorhabditis
           elegans]
 gi|2496805|sp|Q10905|CRN4_CAEEL RecName: Full=Cell death-related nuclease 4; Flags: Precursor
 gi|1086852|gb|AAA82440.1| Hypothetical protein AH9.2 [Caenorhabditis elegans]
 gi|31747257|gb|AAP57300.1| cell death-related nuclease 4 [Caenorhabditis elegans]
          Length = 298

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 70/195 (35%), Gaps = 27/195 (13%)

Query: 10  IVFDIETTGLDSKND---RIIEIGAVELL---DYSKTNRTFQVFLCPN-GRKNSPEALKL 62
           ++ D ETT   +  D    +I+   V      D  + + +F  ++ P   R  +   +  
Sbjct: 12  LILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDF 71

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFF---------------NEQNAEWIAHNAKFDVGF-I 106
            GI    +    +F  ++ +F  +                + Q+   IA          +
Sbjct: 72  TGIPQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQM 131

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
            A  ++        +  +D +     K  S+  ++  + + Y +    R  H A+ D   
Sbjct: 132 PAFFRQYINLYKIFTNEMDRMGP---KELSATTNIGKMNEYYDLPTIGR-AHDAMDDCLN 187

Query: 167 LSDVYIKMMVGGSQI 181
           ++ +  +M+  G+++
Sbjct: 188 IATILQRMINMGAKV 202


>gi|289426433|ref|ZP_06428176.1| exonuclease [Propionibacterium acnes SK187]
 gi|289153161|gb|EFD01879.1| exonuclease [Propionibacterium acnes SK187]
          Length = 205

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 22/170 (12%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSP---EALK 61
           K   +  D E TGLD  +D +IE+ A+              V + P  +           
Sbjct: 2   KDMLVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRN 61

Query: 62  LH---GI---TDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRIN 114
           +H   G+    D+ L    +   +      +  +   A    +    D  F+  ++ ++ 
Sbjct: 62  MHTTSGLLAELDKGLTMAQAQDQVLDYIRTYVPQAGKAPLAGNTIGTDRSFLAKDMPKLE 121

Query: 115 KDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 +  + ++  +ARR +P          + +G +   +  H AL D
Sbjct: 122 SYVHYRNVDVSSIKELARRWYP----------RAFGHSPEKQGNHRALAD 161


>gi|332142294|ref|YP_004428032.1| Endodeoxyribonuclease [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552316|gb|AEA99034.1| Endodeoxyribonuclease [Alteromonas macleodii str. 'Deep ecotype']
          Length = 194

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 68/188 (36%), Gaps = 42/188 (22%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFL-----CPNGRK 54
           MIR  KM+ ++ DIET G    +  I+ IGAV    +  +T RTF   +       +G  
Sbjct: 1   MIR--KMKDVMIDIETVGTQPYSA-IVSIGAVFFDPFTGETGRTFYDVISLDSCIKHGLV 57

Query: 55  NSPEALKLHGITDEFLKDKPS----------FSSIFSEFWDFFNEQN-----AEWIAHNA 99
             P  ++         +DK +             + + F +F   +       +   + A
Sbjct: 58  MDPSTIQ-----WWIKQDKEAAKVFFGFKRNLPDVMTSFTEFLTAEGITKKSVKPWGNGA 112

Query: 100 KFDVGFINAELQRINKD---PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
            FD+  +    + + ++        R + T+         ++N          I  +  +
Sbjct: 113 SFDITLLECAYKVVGQEHPWEFWNVRDVRTVVAMGEGISDAKNT---------IPRAG-T 162

Query: 157 KHGALLDS 164
            H AL DS
Sbjct: 163 YHNALDDS 170


>gi|71397756|ref|XP_802533.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70863734|gb|EAN81087.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 210

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 49/168 (29%), Gaps = 20/168 (11%)

Query: 25  RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSE 82
            IIE   V +     +    F  F+ P      S    +L GI  E + +      +   
Sbjct: 2   EIIEFPVVMVDVRLQRAVAEFHHFVKPKVNPKLSEFCRQLTGIRQEDIDNALPLEDVIRR 61

Query: 83  F------------WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           F                              +  +I++  ++  + P    + ID     
Sbjct: 62  FERWHAQTVPPGSRTMLATDGPT-----DLKEFMYIHSVSRQGIRFPSMFYQWIDVKRFF 116

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                  +  + ++          R  H  + D+  ++ + I+M+  G
Sbjct: 117 AHFFQCQQGKIKAMLDALNCPFEGR-LHSGIDDARNVATIVIRMLKLG 163


>gi|120610573|ref|YP_970251.1| oligoribonuclease [Acidovorax citrulli AAC00-1]
 gi|166215745|sp|A1TND9|ORN_ACIAC RecName: Full=Oligoribonuclease
 gi|120589037|gb|ABM32477.1| Exonuclease, RNase T and DNA polymerase III [Acidovorax citrulli
           AAC00-1]
          Length = 193

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 33/181 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEAL 60
           + K+ +  +  D E TGLD + DR++EI  V       T    +  +  P    +  +AL
Sbjct: 13  LPKSDLNFVWLDCEMTGLDPEKDRLLEIAVV------VTGPELEPRVEGPVFAIHQSDAL 66

Query: 61  ---------KLHGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
                      HG +          + +  +  +I      +  +  A    ++   D  
Sbjct: 67  LDGMDAWNKGTHGRSGLIEKVRASTVTEAEAEQAILEFLARYVRKGVAPMCGNSIGQDRR 126

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           F+   + ++       +  + TL    R+                 +     KH AL D 
Sbjct: 127 FLVRYMPKLEAFFHYRNVDVSTLKELSRRWKPEVYA----------SFKKAQKHTALADV 176

Query: 165 H 165
           H
Sbjct: 177 H 177


>gi|50843110|ref|YP_056337.1| oligoribonuclease [Propionibacterium acnes KPA171202]
 gi|81826407|sp|Q6A786|ORN_PROAC RecName: Full=Oligoribonuclease
 gi|50840712|gb|AAT83379.1| oligoribonuclease [Propionibacterium acnes KPA171202]
 gi|313763467|gb|EFS34831.1| exonuclease [Propionibacterium acnes HL013PA1]
 gi|313808072|gb|EFS46553.1| exonuclease [Propionibacterium acnes HL087PA2]
 gi|313813519|gb|EFS51233.1| exonuclease [Propionibacterium acnes HL025PA1]
 gi|313816648|gb|EFS54362.1| exonuclease [Propionibacterium acnes HL059PA1]
 gi|313819642|gb|EFS57356.1| exonuclease [Propionibacterium acnes HL046PA2]
 gi|313822034|gb|EFS59748.1| exonuclease [Propionibacterium acnes HL036PA1]
 gi|313823730|gb|EFS61444.1| exonuclease [Propionibacterium acnes HL036PA2]
 gi|313826052|gb|EFS63766.1| exonuclease [Propionibacterium acnes HL063PA1]
 gi|313829524|gb|EFS67238.1| exonuclease [Propionibacterium acnes HL063PA2]
 gi|314914829|gb|EFS78660.1| exonuclease [Propionibacterium acnes HL005PA4]
 gi|314919419|gb|EFS83250.1| exonuclease [Propionibacterium acnes HL050PA1]
 gi|314920674|gb|EFS84505.1| exonuclease [Propionibacterium acnes HL050PA3]
 gi|314924777|gb|EFS88608.1| exonuclease [Propionibacterium acnes HL036PA3]
 gi|314930554|gb|EFS94385.1| exonuclease [Propionibacterium acnes HL067PA1]
 gi|314954492|gb|EFS98898.1| exonuclease [Propionibacterium acnes HL027PA1]
 gi|314957575|gb|EFT01678.1| exonuclease [Propionibacterium acnes HL002PA1]
 gi|314961982|gb|EFT06083.1| exonuclease [Propionibacterium acnes HL002PA2]
 gi|314968385|gb|EFT12483.1| exonuclease [Propionibacterium acnes HL037PA1]
 gi|314978912|gb|EFT23006.1| exonuclease [Propionibacterium acnes HL072PA2]
 gi|314986647|gb|EFT30739.1| exonuclease [Propionibacterium acnes HL005PA2]
 gi|314991003|gb|EFT35094.1| exonuclease [Propionibacterium acnes HL005PA3]
 gi|315083650|gb|EFT55626.1| exonuclease [Propionibacterium acnes HL027PA2]
 gi|315087019|gb|EFT58995.1| exonuclease [Propionibacterium acnes HL002PA3]
 gi|315089194|gb|EFT61170.1| exonuclease [Propionibacterium acnes HL072PA1]
 gi|315099093|gb|EFT71069.1| exonuclease [Propionibacterium acnes HL059PA2]
 gi|315100423|gb|EFT72399.1| exonuclease [Propionibacterium acnes HL046PA1]
 gi|315106884|gb|EFT78860.1| exonuclease [Propionibacterium acnes HL030PA1]
 gi|315109117|gb|EFT81093.1| exonuclease [Propionibacterium acnes HL030PA2]
 gi|327334124|gb|EGE75838.1| oligoribonuclease [Propionibacterium acnes HL097PA1]
 gi|327446295|gb|EGE92949.1| exonuclease [Propionibacterium acnes HL013PA2]
 gi|327454846|gb|EGF01501.1| exonuclease [Propionibacterium acnes HL087PA3]
 gi|327457869|gb|EGF04524.1| exonuclease [Propionibacterium acnes HL083PA2]
 gi|328752440|gb|EGF66056.1| exonuclease [Propionibacterium acnes HL020PA1]
 gi|328755323|gb|EGF68939.1| exonuclease [Propionibacterium acnes HL087PA1]
 gi|328758196|gb|EGF71812.1| exonuclease [Propionibacterium acnes HL025PA2]
 gi|332676038|gb|AEE72854.1| oligoribonuclease [Propionibacterium acnes 266]
          Length = 202

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 24/165 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSP---EALKLH---G 64
            D E TGLD  +D +IE+ A+              V + P  +           +H   G
Sbjct: 5   IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMHTTSG 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +  E L    + +    +  D+          A    +    D  F+  ++ ++      
Sbjct: 65  LLAE-LDKGLTMAQAQDQVLDYIRTYVPQAGKAPLAGNTIGTDRSFLAKDMPKLESYVHY 123

Query: 120 PSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  + ++  +ARR +P          + +G +   +  H AL D
Sbjct: 124 RNVDVSSIKELARRWYP----------RAFGHSPEKQGNHRALAD 158


>gi|83648050|ref|YP_436485.1| oligoribonuclease [Hahella chejuensis KCTC 2396]
 gi|123531236|sp|Q2SBB4|ORN_HAHCH RecName: Full=Oligoribonuclease
 gi|83636093|gb|ABC32060.1| Oligoribonuclease (3'->5' exoribonuclease) [Hahella chejuensis KCTC
           2396]
          Length = 182

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 62/176 (35%), Gaps = 27/176 (15%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV------ELLDYSKTNRTFQ-----VFLC 49
           M R++ +  I  D+E TGLD  +DRIIE+  V      EL+         Q       + 
Sbjct: 1   MSRRDNL--IWIDLEMTGLDPDSDRIIEMAVVVTTSNLELVAEGPVIAVHQPDSVLALMD 58

Query: 50  PNGRKNSPEALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
              R  +  A  L G      + +  +   I        +   +    ++   D  F+  
Sbjct: 59  DWNRN-THGASGLTGRVKGSTIGEADAEKQILDFLAQHVDAGCSPMCGNSIGQDRRFLAR 117

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++ + K     +  + TL  +ARR  P             GI    +  H AL D
Sbjct: 118 YMKDLEKFFHYRNLDVSTLKELARRWRPEV---------AAGIK--KKGSHQALED 162


>gi|19920610|ref|NP_608732.1| CG3165 [Drosophila melanogaster]
 gi|7295872|gb|AAF51172.1| CG3165 [Drosophila melanogaster]
 gi|17944281|gb|AAL48034.1| LD40940p [Drosophila melanogaster]
 gi|220955964|gb|ACL90525.1| CG3165-PA [synthetic construct]
          Length = 351

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 28/147 (19%)

Query: 9   KIVFDIETTGLDSKNDR---IIEIGAVELLDYS--------------------KTNRTFQ 45
             V D+ETT L +  +    I E+                             +      
Sbjct: 20  FAVLDLETTNLPAYRNNRVSITELCIYAFEAALLKKKKKEQDQDEQQELPAAPRVLHKLN 79

Query: 46  VFLCPNGRKNSPEALKLHGITDEFLKDKPSFS-SIFSEFWDFFNEQNAE--WIAHN-AKF 101
           V   P+     PEA ++ G+++  L+ +             F     +    +AHN   F
Sbjct: 80  VLFQPS-MVVDPEAERITGLSNYLLERESQLDTDAAQLIVSFLKHLPSPVCLVAHNGWGF 138

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLS 128
           D   +    +++N +       +D+L 
Sbjct: 139 DFPILRQAFEKLNIELPQSLTCVDSLR 165


>gi|294629494|ref|ZP_06708054.1| oligoribonuclease [Streptomyces sp. e14]
 gi|292832827|gb|EFF91176.1| oligoribonuclease [Streptomyces sp. e14]
          Length = 202

 Score = 51.8 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 64/172 (37%), Gaps = 30/172 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH 63
           R +  D E TGL   +D +IE+ A V   + +       + + P        PE + ++H
Sbjct: 4   RMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVRQMH 63

Query: 64  ---GITDEF-----LKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRIN 114
              G+  E      LKD      + +   +   E   A    ++   D GF+  ++  + 
Sbjct: 64  TASGLLAELPGGTTLKDA--EEQVLAYVREHVKEPGKAPLCGNSVGTDRGFLLRDMPVLE 121

Query: 115 KDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                  RI+D  SI   ARR +P          + Y  +      H AL D
Sbjct: 122 GYL--HYRIVDVSSIKELARRWYP----------RAYFNSPEKNGNHRALAD 161


>gi|213514832|ref|NP_001133998.1| REX4, RNA exonuclease 4 homolog [Salmo salar]
 gi|209156100|gb|ACI34282.1| RNA exonuclease 4 [Salmo salar]
          Length = 437

 Score = 51.8 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 53/167 (31%), Gaps = 17/167 (10%)

Query: 8   RKIVFDIETTGLDSKN-DRIIE-IGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + +  D E  G+     D I+  +  V           +   + P  +        + GI
Sbjct: 247 KAVAMDCEMVGVGPDGEDSIVARVSLVNQFGKCI----YDKHVKPTEKVTDYR-TAVSGI 301

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             E +K+  +  ++  E  +    Q    + H    D+  +      +   P    R   
Sbjct: 302 RPENIKNGENVKTVQKEVAEIL--QGRTLVGHAIHNDLKIL------LLDHPKKRIRDTQ 353

Query: 126 TLSIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVY 171
                ++   S R  L  LC+    + +     H ++ D+     +Y
Sbjct: 354 KYKPFKKIVKSGRPSLKLLCREILNVKVQQGE-HSSVQDAQATMRLY 399


>gi|323451416|gb|EGB07293.1| hypothetical protein AURANDRAFT_14950 [Aureococcus anophagefferens]
          Length = 191

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 67/196 (34%), Gaps = 36/196 (18%)

Query: 12  FDIETT---GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCP-NGRKNSPEALKLHGIT 66
            D E T   G D     IIE   V       +   +F  ++ P      S     L GI 
Sbjct: 1   LDFECTCEPGWDYI-HEIIEFPVVLFDTRTREITDSFHSYVRPTENATLSAFCTDLTGIE 59

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK---------FDV-GFINAELQR--IN 114
              +   P+   +  +   +   +    +              +D+  F++ EL R  + 
Sbjct: 60  QATVDAAPTLPEVLDDLDAWLRARG--LVGAEPAASFALATDGWDLEHFLDVELSRKLLY 117

Query: 115 KDPLDPSRIIDTLSIARRKHPSSR--------------NDLNSLCKRYGITISHRSKHGA 160
           K      R +D LS A     +++              ++LN++ + + +    R  H  
Sbjct: 118 KPGDYLDRWVD-LSKAFDLRRAAKDVENGRKKGRSRRRSNLNTMLRHHKMEFEGR-LHSG 175

Query: 161 LLDSHLLSDVYIKMMV 176
           + D+  L+ V I ++ 
Sbjct: 176 IDDATNLARVGIALLE 191


>gi|291383854|ref|XP_002708465.1| PREDICTED: small fragment nuclease [Oryctolagus cuniculus]
          Length = 237

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLH 63
            R +  D+E TGLD + D+IIE+   +   D +       + +          +   K H
Sbjct: 41  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 100

Query: 64  ----GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
               G+T    +   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 101 HGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQFMK 160

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P          + Y       + H AL D
Sbjct: 161 HLHYRIIDVSTVKELCRRWYP----------EEYEFAPKKAASHRALDD 199


>gi|218680718|ref|ZP_03528615.1| dephospho-CoA kinase protein [Rhizobium etli CIAT 894]
          Length = 238

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/27 (70%), Positives = 24/27 (88%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVE 33
           MR+I+FD ETTGLD++ DRIIEIG +E
Sbjct: 203 MREIIFDTETTGLDNRADRIIEIGGIE 229


>gi|120405054|ref|YP_954883.1| oligoribonuclease [Mycobacterium vanbaalenii PYR-1]
 gi|119957872|gb|ABM14877.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium
           vanbaalenii PYR-1]
          Length = 214

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 27/173 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA---LK 61
           +   +  D E TGLD K+DR+IEI   V   + +       V +  +    S       +
Sbjct: 5   RDELVWIDCEMTGLDLKSDRLIEIAVLVTDSELNILGDGLDVVIHADETAMSSMIDVVAQ 64

Query: 62  LH---GITDE----FLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRI 113
           +H   G+ DE     +    +   + +   +   + + A    ++   D GFI  ++ ++
Sbjct: 65  MHAKSGLIDEVRASTVDLATAEDMVMTYIREHVKQAKTAPLAGNSIATDRGFIARDMPKL 124

Query: 114 NKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             D     R+ID  SI    RR +P            +G        H AL D
Sbjct: 125 --DDYLHYRMIDVSSIKELCRRWYPR---------IYFGQP-EKGLAHRALAD 165


>gi|115437370|ref|XP_001217793.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114188608|gb|EAU30308.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 610

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 80/256 (31%), Gaps = 56/256 (21%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAVELLDYSKTNRTFQ---VFLCPNGRKNSPE 58
           R IV  + TT    G+    D   +IE+G + L   +KT        V + P     +P 
Sbjct: 12  RYIVIHVATTCDEHGVYVTKDSAEVIELGWILL--DTKTCEELHRESVLVKPVNTPITPL 69

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115
              L  +T E ++   +F    + F  F  E     I+ N +F    +++   R+     
Sbjct: 70  CTSLTTLTWEHVRSAGTFRDAINRFDAFAQEH---LISKNLEFAFVTLDSWDLRVQLPRE 126

Query: 116 ---------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGI-------TI 152
                      L  SR  D  +  +R         P   + L+++C    +        I
Sbjct: 127 ARDKAVVLPPYLQHSRTFDLRTEYQRWQTHHPESLPFGPSSLSNICAALEVEPVQTSAPI 186

Query: 153 SHR-SKH----------GALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP 201
            H    H           A+ ++  L+ V   ++      +                   
Sbjct: 187 KHNLPFHLQALAPASPRRAMEEAVTLARVLRGLIRKSQPPHEH-----PEILTRPMDARA 241

Query: 202 NISLLKRDKPLFTRIT 217
           ++     ++     ++
Sbjct: 242 DVRAFLAERSKVLHLS 257


>gi|30683321|ref|NP_850090.1| exonuclease family protein [Arabidopsis thaliana]
 gi|83305201|sp|Q9ZVE0|ORN_ARATH RecName: Full=Oligoribonuclease
 gi|17381150|gb|AAL36387.1| unknown protein [Arabidopsis thaliana]
 gi|25054981|gb|AAN71962.1| unknown protein [Arabidopsis thaliana]
 gi|330252818|gb|AEC07912.1| oligoribonuclease [Arabidopsis thaliana]
          Length = 222

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 32/175 (18%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR----KNSPEALK 61
           K   +  D+E TGL+ + DRI+EI  +        +      +    +    K       
Sbjct: 43  KQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKMDDWCQT 102

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDF----FNEQNAEWIAHNAKFDVGFINAELQRIN 114
            H   G+T + L    +      +  +F        N     ++   D  F+   +  + 
Sbjct: 103 HHGASGLTKKVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFLFLKKYMPEL- 161

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK------HGALLD 163
              L P  ++D             + + +LC R+   I  R        H A+ D
Sbjct: 162 -AALFPHILVDV------------SSVKALCARW-FPIERRKAPAKKNNHRAMDD 202


>gi|255641871|gb|ACU21204.1| unknown [Glycine max]
          Length = 366

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 52/179 (29%), Gaps = 26/179 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E  G  S     +E+ A   L        F  ++ P     +     + G+T+E 
Sbjct: 140 VAIDCEMVGGGSDGS--LELCARVCLVDEDERLIFHTYVQPEI-PVTNYRYDITGLTEEH 196

Query: 70  LKDKPSFSSIFSEFWDFF------------NEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           LK+      +  +                   +    + H+   D+  +           
Sbjct: 197 LKNAIPLKKVREKLLQILQNGESIGKVRLDGGKARLLVGHDLAHDLDCLKMNY------- 249

Query: 118 LDPSRIIDTLSIARRKHPSS-RNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKM 174
                + DT         +   + L  L + Y G  I   + H    D   +  +Y ++
Sbjct: 250 -PDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGT-HDPYEDCISVMRLYKRI 306


>gi|295836748|ref|ZP_06823681.1| oligoribonuclease [Streptomyces sp. SPB74]
 gi|197697620|gb|EDY44553.1| oligoribonuclease [Streptomyces sp. SPB74]
          Length = 198

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 28/171 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEALK-LH 63
           R +  D E TGL   ND +IE+ A V   + +       + + P G      PE ++ +H
Sbjct: 4   RMVWIDCEMTGLSLANDALIEVAALVTDSELNILGDGVDIVIRPPGEALETMPEVVRDMH 63

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINK 115
              G+  E L    + +        +  E     + A    +    D  F+  ++  +  
Sbjct: 64  TSSGLLAE-LDGGTTLADAEERVLSYVREHVKEPRKAPLCGNTVGTDRNFLARDMAELEG 122

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 RI+D  S+   +RR  P            +      +  H AL D
Sbjct: 123 --FLHYRIVDVSSVKELSRRWFPR---------AYFNAP-EKKGNHRALAD 161


>gi|156546675|ref|XP_001603963.1| PREDICTED: similar to ENSANGP00000010833 [Nasonia vitripennis]
          Length = 185

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 30/172 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNG---RKNSPEALKLH 63
           R I  D+E TGL+   D+I+E+ ++   D  +  +  FQ+ +  +        P   + H
Sbjct: 11  RIIWIDLEMTGLNVMQDKILEVASIITDDQLNIVSDEFQMVIHQSEDVFETMIPWCQEQH 70

Query: 64  GIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
             T       +    ++ +   +   F  +               D  F+   + R+ + 
Sbjct: 71  NKTGLIEASRNSIFNEEMAEEELIRFFRKYVPHNTCPLAGSCLYMDRAFLQQHMPRVFEY 130

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK-----HGALLD 163
             D   +ID             + +N L KR+   I  + +     H AL D
Sbjct: 131 LGD--EVIDV------------SSINELAKRWNKKIERKKQRKTGDHRALGD 168


>gi|328860180|gb|EGG09287.1| hypothetical protein MELLADRAFT_47550 [Melampsora larici-populina
           98AG31]
          Length = 413

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 70/209 (33%), Gaps = 25/209 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D E  G+       + +  V +++Y         ++ P  +        + GIT 
Sbjct: 87  RFLAIDCEMVGVGPNGSESV-LARVSIVNYYGAV-LLDSYVSPKEKVTDYR-TWVSGITP 143

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L +  SFS + S+      ++    + H    D+  +  +  R           +  L
Sbjct: 144 EHLANASSFSEVTSKVAQLIKDK--VLVGHAITNDLQALLLKHPRNLIRDTSKYGPLRVL 201

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           S  +   PS +    +L  R  I  S    H ++ D+     VY              +T
Sbjct: 202 SGTK--FPSLKKL-AALLLRLEIQTS---SHSSVDDARATMAVY--------------RT 241

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            +D +    +    +I+ L R       +
Sbjct: 242 QKDEWEASLRPQHSSIAPLFRPPSRPKTV 270


>gi|290960166|ref|YP_003491348.1| oligoribonuclease [Streptomyces scabiei 87.22]
 gi|260649692|emb|CBG72807.1| oligoribonuclease [Streptomyces scabiei 87.22]
          Length = 200

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 24/169 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH 63
           R +  D E TGL   +D +IE+ A V   + +       + + P        PE + ++H
Sbjct: 4   RMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGDGVDIVIRPPDAALETMPEVVRQMH 63

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINK 115
              G+ D  L    + +   ++   +  E     + A    +    D GF+  ++  +  
Sbjct: 64  TASGLLDA-LAGGTTLADAEAQVLAYVREHVKEPRKAPLCGNTVGTDRGFLLRDMPTLEG 122

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + ++  +ARR +P          + Y  +      H AL D
Sbjct: 123 HLHYRIVDVSSVKELARRWYP----------RAYFNSPEKNGNHRALAD 161


>gi|319783791|ref|YP_004143267.1| exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169679|gb|ADV13217.1| Exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 204

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 56/167 (33%), Gaps = 16/167 (9%)

Query: 26  IIEIGAVEL--LDYSKTNRTFQVFLCPNGR-----KNSPEALKLHGITDEFLKDK-PSFS 77
           I +IGAV L          T + ++ P  R        P   KL GIT+E L+ K  +  
Sbjct: 32  IAQIGAVRLGLEGDFPLLGTHKAYIRPVDRFGQRYALDPFFTKLTGITEEDLETKGVALG 91

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS 137
              ++   F   + A + +     ++  I          P  P+   D            
Sbjct: 92  DALADIDRF--SEGARFWSWGKD-ELNMIAISCYVAGIQPSIPATRFDNAVKLLIAAGMP 148

Query: 138 RNDL-----NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             DL     N L   YG+       H AL D+  ++     +M  G 
Sbjct: 149 IEDLARTPSNKLADYYGVKHPPLQGHDALDDALSVTYTLQHLMKIGK 195


>gi|302769470|ref|XP_002968154.1| hypothetical protein SELMODRAFT_89701 [Selaginella moellendorffii]
 gi|300163798|gb|EFJ30408.1| hypothetical protein SELMODRAFT_89701 [Selaginella moellendorffii]
          Length = 168

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 66/174 (37%), Gaps = 22/174 (12%)

Query: 7   MRKIVFDIETT---GLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           M  + +D+ET+   G   ++  I+E GAV           ++   + P+   +   A   
Sbjct: 1   MEIVFYDLETSMPEG-KEQSREILEFGAVVLSAKGLVEVDSYTTPVRPSVMNSRNAA--- 56

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121
            G +   L+       +  E   +  +    W  HN  +FD   I      I +   + +
Sbjct: 57  -GTSSGALR-------LLIESMSYCTQAGRIWAGHNICEFDNVRIEEAFASIGRPMPEAA 108

Query: 122 RIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
             IDTL + +R     +    L++L   + +    + +H +L D  +   V  +
Sbjct: 109 GFIDTLPLLQRTFGQRAGNLKLSTLAAYFSL---GKQEHRSLPDVRMNIKVLKR 159


>gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51]
 gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 578

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 54/153 (35%), Gaps = 44/153 (28%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M +    + I  D ETTGLD      R+I++ A +L         F     P GR+    
Sbjct: 16  MEKLTAAKVIAVDTETTGLDPHTCQLRLIQLAAEDL--PVLVIDCFSFL--PEGRELINA 71

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            L   GI                             I  NAKFD+ F+ A         +
Sbjct: 72  ILSTSGIK----------------------------IFQNAKFDLQFLMAL-------DI 96

Query: 119 DPSRIIDTLSIARRKHPSS---RNDLNSLCKRY 148
            P  + DT+  ++    S    +++L +L + Y
Sbjct: 97  FPPTLFDTMLASQLLRGSGGPVQSNLKALAQHY 129


>gi|89267425|emb|CAJ83758.1| prevents mitotic catastrophe 2 homolog [Xenopus (Silurana)
           tropicalis]
          Length = 414

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 17/167 (10%)

Query: 8   RKIVFDIETTG--LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +  D E  G  LD +   +  +  V L         +  ++ P  R        + GI
Sbjct: 227 RTVAMDCEMVGVGLDGEESMLARVSIVNLFGKCV----YDKYVRPTERVTDYR-TAVSGI 281

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             + +K+  +F  + +E  +    +    + H    D+  +  +       P    R   
Sbjct: 282 RPDDIKNGEAFKDVQAEVAEIL--RGRTLVGHAVHNDLKILFLDH------PKKAIRDTQ 333

Query: 126 TLSIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVY 171
                + K  S R  L  LC++   + +     H ++ D+     +Y
Sbjct: 334 KYKPFKEKVKSGRPSLKLLCEKILNVKVQTGE-HCSVQDAQAAMRLY 379


>gi|55742535|ref|NP_001006868.1| RNA exonuclease 4 [Xenopus (Silurana) tropicalis]
 gi|71153421|sp|Q6DEW6|REXO4_XENTR RecName: Full=RNA exonuclease 4; AltName: Full=Exonuclease XPMC2;
           AltName: Full=Prevents mitotic catastrophe 2 protein
 gi|49899970|gb|AAH76977.1| XPMC2 prevents mitotic catastrophe 2 homolog (Xenopus laevis)
           [Xenopus (Silurana) tropicalis]
          Length = 414

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 17/167 (10%)

Query: 8   RKIVFDIETTG--LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +  D E  G  LD +   +  +  V L         +  ++ P  R        + GI
Sbjct: 227 RTVAMDCEMVGVGLDGEESMLARVSIVNLFGKCV----YDKYVRPTERVTDYR-TAVSGI 281

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             + +K+  +F  + +E  +    +    + H    D+  +  +       P    R   
Sbjct: 282 RPDDIKNGEAFKDVQAEVAEIL--RGRTLVGHAVHNDLKILFLDH------PKKAIRDTQ 333

Query: 126 TLSIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVY 171
                + K  S R  L  LC++   + +     H ++ D+     +Y
Sbjct: 334 KYKPFKEKVKSGRPSLKLLCEKILNVKVQTGE-HCSVQDAQAAMRLY 379


>gi|237747031|ref|ZP_04577511.1| oligoribonuclease [Oxalobacter formigenes HOxBLS]
 gi|229378382|gb|EEO28473.1| oligoribonuclease [Oxalobacter formigenes HOxBLS]
          Length = 218

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 62/179 (34%), Gaps = 35/179 (19%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCP---- 50
           R N++  I  D+E TGLD + DRIIE+  V                       L      
Sbjct: 39  RPNELNLIWVDLEMTGLDPETDRIIEVALVVTDPDLNILAEGPVYAIHQPDEILNAMDAW 98

Query: 51  ----NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGF 105
               +GR    E +K   +T+   +D         EF + +  +  +    +    D  F
Sbjct: 99  NKGTHGRSGLIERVKASNVTEAMAEDA------LIEFLEAYVPKGKSPMCGNTICQDRRF 152

Query: 106 INAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   + ++       +  + TL  ++RR  P        L + +        KH AL D
Sbjct: 153 MAKTMPKLEAYFHYRNLDVSTLKELSRRWKPG-------LMEGFK----KLQKHTALAD 200


>gi|96979801|ref|YP_611004.1| v-trex [Antheraea pernyi nucleopolyhedrovirus]
 gi|94983334|gb|ABF50274.1| v-trex [Antheraea pernyi nucleopolyhedrovirus]
 gi|146229697|gb|ABQ12262.1| EXO III v-trex [Antheraea pernyi nucleopolyhedrovirus]
          Length = 230

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 62/204 (30%), Gaps = 43/204 (21%)

Query: 9   KIVFDIETTGLDSKND---RIIEIG--AVELLDYSKTNRTFQ--VFLCPNGRKNSPEALK 61
               D+ETTGL    +   +I E+    V   +   + R               S +A  
Sbjct: 7   YAFLDLETTGLPKLQNNQTQITELSLQCVTREELLGSARVCNKLTLCFEPTVPVSDQASV 66

Query: 62  LHGITDEFLKDKPSF----SSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINK- 115
           L  +  E L+ +P F    +++   F    +      +A+N   FD   ++  L+     
Sbjct: 67  LTQLNAENLRGQPRFDGRAAALIESFLALLSPPVC-LVAYNGFAFDFPILHKHLKDNGFA 125

Query: 116 -------------------DPLDPSR------IIDTLSIARRKHPSSRNDLNSLCKRY-G 149
                               P    R       +      R   P     L  L K++ G
Sbjct: 126 GAVQCADAYHGLFAILDGSGPPTMKRSKSGTVTVKLCPWQRGARPKQSYKLVDLYKKHVG 185

Query: 150 ITISHRSKHGALLDSHLLSDVYIK 173
            ++     H A  D  ++  +  K
Sbjct: 186 GSVEG---HRAENDCAMMMRLAQK 206


>gi|154249057|ref|YP_001409882.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
 gi|154152993|gb|ABS60225.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
          Length = 898

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 52/144 (36%), Gaps = 31/144 (21%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K +KI  D+ETT LD    +I+ I            + F + +   G KN P        
Sbjct: 323 KSKKIALDLETTSLDPFEGKIVGISI-----AVDEGKAFYIPIAHVGAKNIPI------- 370

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                           +F             HN KFD+ FI+    R+  +P  PS   D
Sbjct: 371 ------------ESVKKFLRDLFNSGKTVGGHNIKFDLKFIS----RLGIEPQIPS--FD 412

Query: 126 TLSIARRKHP-SSRNDLNSLCKRY 148
           ++  A   +P   + +L+ L  + 
Sbjct: 413 SMIEAYLLNPNEKKFNLDELSLKL 436


>gi|115379892|ref|ZP_01466953.1| DNA polymerase B, exonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|310817667|ref|YP_003950025.1| DNA polymerase [Stigmatella aurantiaca DW4/3-1]
 gi|115363108|gb|EAU62282.1| DNA polymerase B, exonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|309390739|gb|ADO68198.1| DNA polymerase [Stigmatella aurantiaca DW4/3-1]
          Length = 802

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 27/107 (25%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETTGL+  +DRI  +                    P G+   PE L+ HG  D    
Sbjct: 161 FDLETTGLEPDHDRIFLVA----------------LRTPEGQ---PETLEAHG--DSDAA 199

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWI-AHNAK-FDVGFINAELQRINKD 116
           +      +           + + I  HN   FD+ F+    +R+   
Sbjct: 200 EA----ELLQRLAARIRACDPDVIENHNLHGFDLPFLAHRAKRLGVP 242


>gi|21553688|gb|AAM62781.1| putative exonuclease [Arabidopsis thaliana]
          Length = 344

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 9/108 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++++ +  D E  G  +    I +  +V L+D  +    F   + P          ++ G
Sbjct: 128 SRLKAVALDCEMVGGGADG-TIDQCASVCLVDDDENV-IFSTHVQPLLPVTDYRH-EITG 184

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF------NEQNAEWIAHNAKFDVGFI 106
           +T E LKD      +    + F              + H+ + D+  +
Sbjct: 185 LTKEDLKDGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCL 232


>gi|326318064|ref|YP_004235736.1| exonuclease RNase T and DNA polymerase III [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323374900|gb|ADX47169.1| Exonuclease RNase T and DNA polymerase III [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 193

 Score = 51.8 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 33/181 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEAL 60
           + K+ +  +  D E TGLD + DR++EI  V       T    +  +  P    +  +AL
Sbjct: 13  LPKSDLNFVWLDCEMTGLDPEKDRLLEIAVV------VTGPELEPRVEGPVFAIHQSDAL 66

Query: 61  ---------KLHGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
                      HG +          + +  +  +I      +  +  A    ++   D  
Sbjct: 67  LDGMDAWNKGTHGRSGLIEKVRASTVTEAEAEQAILEFLARYVRKGVAPMCGNSIGQDRR 126

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           F+   + ++       +  + TL    R+                 +     KH AL D 
Sbjct: 127 FLVRYMPKLEAFFHYRNVDVSTLKELSRRWKPEVYA----------SFKKAQKHTALADV 176

Query: 165 H 165
           H
Sbjct: 177 H 177


>gi|113868667|ref|YP_727156.1| oligoribonuclease [Ralstonia eutropha H16]
 gi|113527443|emb|CAJ93788.1| Oligoribonuclease (3'->5' exoribonuclease) [Ralstonia eutropha H16]
          Length = 208

 Score = 51.8 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 57/181 (31%), Gaps = 41/181 (22%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K++   I  D+E TGL    DRIIEI  V       T+    +               L 
Sbjct: 11  KSENNLIWLDMEMTGLQPDTDRIIEIAIV------VTDSELNILAEGPVLVIHQSDAVLD 64

Query: 64  GITDE--------FLKDKP-----SFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFI 106
           G+ +          L DK      +     +E   F         +    ++   D  F+
Sbjct: 65  GMDNWNKGTHGRSGLIDKVKASTLTEEQAEAELLAFLKRWVPASKSPMCGNSICQDRRFM 124

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALL 162
              + ++  +     R +D             + L  LCKR+   I      R  H AL 
Sbjct: 125 ARYMPKL--EAFFHYRNLDV------------STLKELCKRWEPAIHKGFIKRQLHTALA 170

Query: 163 D 163
           D
Sbjct: 171 D 171


>gi|118356253|ref|XP_001011385.1| exonuclease family protein [Tetrahymena thermophila]
 gi|89293152|gb|EAR91140.1| exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 475

 Score = 51.8 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 13/178 (7%)

Query: 23  NDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFS 81
              IIE    V  +   K   TF  ++ P   K +     L  I D  +++ P    +  
Sbjct: 266 GSEIIEFPIQVVDVKQLKIIDTFSSYVQP-CSKITKLITNLTKIDDNKVQNAPKIQQVLQ 324

Query: 82  EFWDFFNEQ-----NAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIID--TLSIARRK 133
           +   F  +      +   + ++ K D  FI    +++    P    + ID  T    R +
Sbjct: 325 QVRIFLEKYLKNNFDRCAVVYDNKSDFLFIVEESIKKNFLLPAFLQQYIDLGTCFPIRNE 384

Query: 134 --HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
                 R  L  +    G+    +   GA  D    + V I+++  G       + N+
Sbjct: 385 QNINEQRISLKGMLDTLGMKFQGQKHCGA-DDCKNQALVAIELLKRGYSFTKDLQVND 441


>gi|332238674|ref|XP_003268529.1| PREDICTED: apoptosis-enhancing nuclease-like [Nomascus leucogenys]
          Length = 325

 Score = 51.8 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 54/176 (30%), Gaps = 13/176 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   +  R+ E+    ++ Y   +  +  ++ P          +  GIT 
Sbjct: 109 KCVAIDCEMVGTGPRG-RVSELARCSIVSYHG-DVLYDKYIRPE-MPIVDYRTRWSGITR 165

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++    F     E       +    + H    D   +     R             + 
Sbjct: 166 QHMRKAIPFQVAQKEILKLL--KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSE 223

Query: 128 SIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                 H  +R  L  L  +     I +     H ++ D+    ++Y +++    +
Sbjct: 224 PG---LHTRTRVSLKDLALQLLHKKIQVGQHG-HSSVEDATTAMELY-RLVEVQWE 274


>gi|171694045|ref|XP_001911947.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946971|emb|CAP73775.1| unnamed protein product [Podospora anserina S mat+]
          Length = 619

 Score = 51.8 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 61/198 (30%), Gaps = 48/198 (24%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAVELLDYSKTNRTFQ---VFLCPNGRKNSPE 58
           R +V  + TT    G+    D   +IE+G + L   S          V + P     +P 
Sbjct: 14  RYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDANSIDLHELHRESVLVKPVNTPITPL 73

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
              L  +T E +++  +F    + F  F +E       H    D+ F+   L+  +    
Sbjct: 74  CTSLTTLTWEHVRNAGTFRDAINRFDAFASE-------HLLSNDLDFVFVTLEAWDLRVQ 126

Query: 119 DPSRIID-------TLSIARRK----------------HPSSRNDLNSLCKRYGITISHR 155
            P    D        L  +R                   P   + L ++C    +     
Sbjct: 127 LPREARDKSVVLPPYLQHSRTFELRTEYQRWQQHHPESLPFGPSSLANICAALEVEPVQN 186

Query: 156 SK---HG------ALLDS 164
           S    H       AL  +
Sbjct: 187 SAPIKHNLPFHLQALAPA 204


>gi|126335884|ref|XP_001375011.1| PREDICTED: similar to 3-5 exonuclease TREX1 [Monodelphis domestica]
          Length = 284

 Score = 51.8 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 65/199 (32%), Gaps = 41/199 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDY--------------------SKTNRTFQVFLC 49
           +  D+E TGL     ++ E+  V +  +                     +      + + 
Sbjct: 5   VFMDLEATGLPFSQPKVTELCLVAIHRHALEASQQAPPPGGASSVPPTPRVADKLCLCVA 64

Query: 50  PNGRKNSPEALKLHGITDEFLKD--KPSFSSIFSEFWD-FFNEQNAE--WIAHN-AKFDV 103
           P G+  S  A  L G+    L    +  F S  ++    F   Q      +AHN  +FD 
Sbjct: 65  P-GKACSAAASSLTGLNTAMLTAHRRGPFDSALADLLQAFLRRQRPPLCLVAHNGDRFDF 123

Query: 104 GFINAEL--QRINKDPLDPSRIIDTLSIARRKHPSSR---------NDLNSLCKR-YGIT 151
             + AEL    +  D L  +   D+++  R    S             L ++  R +G  
Sbjct: 124 PLLQAELSAAGLGTDALSGAFCADSITALRALDRSGPPIESSQRKSYSLGNVYARLFGQA 183

Query: 152 ISHRSKHGALLDSHLLSDV 170
                 H A  D   L  V
Sbjct: 184 APD--THTAEGDVLALVSV 200


>gi|79323145|ref|NP_001031426.1| exonuclease family protein [Arabidopsis thaliana]
 gi|222423704|dbj|BAH19818.1| AT2G26970 [Arabidopsis thaliana]
 gi|330252819|gb|AEC07913.1| oligoribonuclease [Arabidopsis thaliana]
          Length = 218

 Score = 51.8 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 32/175 (18%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR----KNSPEALK 61
           K   +  D+E TGL+ + DRI+EI  +        +      +    +    K       
Sbjct: 39  KQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKMDDWCQT 98

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDF----FNEQNAEWIAHNAKFDVGFINAELQRIN 114
            H   G+T + L    +      +  +F        N     ++   D  F+   +  + 
Sbjct: 99  HHGASGLTKKVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFLFLKKYMPEL- 157

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK------HGALLD 163
              L P  ++D             + + +LC R+   I  R        H A+ D
Sbjct: 158 -AALFPHILVDV------------SSVKALCARW-FPIERRKAPAKKNNHRAMDD 198


>gi|62263510|gb|AAX78167.1| unknown protein [synthetic construct]
          Length = 213

 Score = 51.8 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 23/163 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCPNG--RKNSPEALKLH---G 64
            D+E TGLD  + +I EI A+            +      P+      +   +K H   G
Sbjct: 36  IDLEMTGLDVDSCKITEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETG 95

Query: 65  IT----DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +T    D  +  + +   I      F   Q++    ++   D  F+   +  I++     
Sbjct: 96  LTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYR 155

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              + TL +  +     +            +   ++ H AL D
Sbjct: 156 MLDVTTLKLLNQYWGDGK------------SFEKKNTHKALDD 186


>gi|238576454|ref|XP_002388040.1| hypothetical protein MPER_12993 [Moniliophthora perniciosa FA553]
 gi|215448999|gb|EEB88970.1| hypothetical protein MPER_12993 [Moniliophthora perniciosa FA553]
          Length = 394

 Score = 51.8 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 19/171 (11%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            +K   + +  D E  G+         +  V L++Y    +    F+    R  +    +
Sbjct: 95  TQKLPGKYLALDCEMVGVGIDGTE-SSLARVTLVNYHGAVQ-LDEFVRQRERVVNYR-TQ 151

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
             GI +  +     F  +  +  D   ++    + H    D+    A  +R         
Sbjct: 152 YSGIRESDMAKAKPFDEVQKKVADLLKDR--ILVGHAVHNDLKA-RASSRRH-------Y 201

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCK-RYGITISHRSKHGALLDSHLLSDVY 171
           RI DT ++ R K+ + RN    L K    +TI     H +L D+     VY
Sbjct: 202 RITDTFAVVRSKYVALRN----LVKQELDVTIQSGE-HSSLTDARATMAVY 247


>gi|46108570|ref|XP_381343.1| hypothetical protein FG01167.1 [Gibberella zeae PH-1]
          Length = 714

 Score = 51.8 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 29/170 (17%)

Query: 10  IVFDIET--TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  D E   TG +  +  +  I  ++ +     +      + P+ +       +  GIT+
Sbjct: 336 LALDCEMCMTGENEFS--LTRISVIDWVGEVVLDE----LVKPD-KPIIDYVTQFSGITE 388

Query: 68  EFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           + L   P   +   I     +    +    I H+ + D   +     RI+   +     I
Sbjct: 389 DML--APVTTTLHDIQQRLLELLTPR-TILIGHSLESDTKAL-----RISHPFI-----I 435

Query: 125 DT-LSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDV 170
           DT +     + P  ++ L  L ++Y    I     + H ++ D+    D+
Sbjct: 436 DTSIIYPHPRGPPLKSSLKWLAQKYLSKEIQKGGANGHDSIEDAKTCLDL 485


>gi|134082476|emb|CAK97283.1| unnamed protein product [Aspergillus niger]
          Length = 298

 Score = 51.8 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 24/154 (15%)

Query: 36  DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNA 92
           +++        +  P       P A+ + GIT +  + K  + ++  +     F   +  
Sbjct: 124 EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTC 183

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRI--------IDTLSIARRKHPSSRN----- 139
               +N +FD         R   DP   S          +D +       P   N     
Sbjct: 184 ILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEND 243

Query: 140 ------DLNSLCKRYGITISHRSKHGALLDSHLL 167
                  L  L K  GI   H + H A+ D +  
Sbjct: 244 DGLPSFRLEHLTKANGIE--HSNAHDAMADVYAT 275


>gi|163856231|ref|YP_001630529.1| oligoribonuclease [Bordetella petrii DSM 12804]
 gi|163259959|emb|CAP42260.1| oligoribonuclease [Bordetella petrii]
          Length = 181

 Score = 51.8 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 21/173 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N+ R +  D+E TGLD   +RIIE+  V             V +             
Sbjct: 1   MAANENRLVWLDMEMTGLDPTKERIIEVAVVVTEPDLTVVAEGPVLVVHQPDSLLDAMDN 60

Query: 62  LH-------GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAEL 110
            +       G+ D+      + +       +F  +      +    +    D  F+ A +
Sbjct: 61  WNKSTHGKSGLIDKVRASTLTEAQAERMLLEFLAQHVPAGKSPLCGNTISQDRRFMYAYM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             + +     +  + TL    R+   +                 +SKH AL D
Sbjct: 121 PELERFFHYRNLDVSTLKELARRWVPAVYK----------GFEKKSKHEALAD 163


>gi|262201950|ref|YP_003273158.1| exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
           DSM 43247]
 gi|262085297|gb|ACY21265.1| Exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
           DSM 43247]
          Length = 194

 Score = 51.8 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 27/167 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG---RKNSPEALKLH---G 64
            D E TGL  ++D++IEI A V   D +       V +  +            K+H   G
Sbjct: 3   IDCEMTGLSLESDKLIEIAALVTDGDLNILGEGVDVVIHADDDALANMPDVVTKMHADSG 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINKDPLD 119
           +T+E      + +       D+               ++   D GFI  ++  +  D   
Sbjct: 63  LTEEVRASTVTLAEAEKLVLDYIRAHVTTAGAVPLAGNSIATDRGFIARDMPEL--DAYL 120

Query: 120 PSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             R++D  SI   +RR +P            +G        H AL D
Sbjct: 121 HYRMVDVSSIKELSRRWYPR---------IYFGQP-EKGLAHRALAD 157


>gi|74196748|dbj|BAE43110.1| unnamed protein product [Mus musculus]
          Length = 237

 Score = 51.8 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLH 63
            R +  D+E TGLD + D+IIE+   +   D +       + +          +   K H
Sbjct: 41  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 100

Query: 64  ----GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
               G+T    +   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 101 HGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQFMK 160

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P            Y       + H AL D
Sbjct: 161 HLHYRIIDVSTVKELCRRWYPED----------YEFAPKKAASHRALDD 199


>gi|27229283|ref|NP_077195.2| oligoribonuclease, mitochondrial precursor [Mus musculus]
 gi|78100196|sp|Q9D8S4|ORN_MOUSE RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA
           exonuclease 2 homolog; AltName: Full=Small fragment
           nuclease; Flags: Precursor
 gi|26357838|dbj|BAB25219.2| unnamed protein product [Mus musculus]
 gi|148693756|gb|EDL25703.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Mus musculus]
          Length = 237

 Score = 51.8 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLH 63
            R +  D+E TGLD + D+IIE+   +   D +       + +          +   K H
Sbjct: 41  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 100

Query: 64  ----GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
               G+T    +   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 101 HGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQFMK 160

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P            Y       + H AL D
Sbjct: 161 HLHYRIIDVSTVKELCRRWYPED----------YEFAPKKAASHRALDD 199


>gi|56605730|ref|NP_001008327.1| oligoribonuclease, mitochondrial precursor [Rattus norvegicus]
 gi|81910234|sp|Q5U1X1|ORN_RAT RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA
           exonuclease 2 homolog; AltName: Full=Small fragment
           nuclease; Flags: Precursor
 gi|55562847|gb|AAH86420.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Rattus norvegicus]
 gi|149041578|gb|EDL95419.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_c
           [Rattus norvegicus]
          Length = 237

 Score = 51.8 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLH 63
            R +  D+E TGLD + D+IIE+   +   D +       + +          +   K H
Sbjct: 41  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 100

Query: 64  ----GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
               G+T    +   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 101 HGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQFMK 160

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P            Y       + H AL D
Sbjct: 161 HLHYRIIDVSTVKELCRRWYPED----------YEFAPKKAASHRALDD 199


>gi|162457127|ref|YP_001619494.1| hypothetical protein sce8842 [Sorangium cellulosum 'So ce 56']
 gi|161167709|emb|CAN99014.1| Hypothetical protein T07A9.5a [Sorangium cellulosum 'So ce 56']
          Length = 214

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 67/176 (38%), Gaps = 10/176 (5%)

Query: 9   KIVFDIETTGLD----SKND-RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALK 61
            +V D+E T  D     +++  IIE+GAV +     +     Q F+ P      S   ++
Sbjct: 7   YLVIDLEATCSDDPSFPRDEMEIIEVGAVLVDAGTLRPAAELQCFVRPIRHPRLSAFCMR 66

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L  I    +   P F +  +   +    + A + +    +D   +  + +R         
Sbjct: 67  LTSIRQADVDAAPRFPAAAARLRELVRGRQALFCSW-GGYDKRQLERDARRHGVALPFGG 125

Query: 122 RIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             ++   + ARR        +    +R G++    ++H A+ D+  ++ +    + 
Sbjct: 126 DHLNLKRAFARRLGAERELGVGQALRRVGLSF-QGTQHRAIDDARNIARLLPHALG 180


>gi|328767813|gb|EGF77861.1| hypothetical protein BATDEDRAFT_13674 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 170

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 59/172 (34%), Gaps = 24/172 (13%)

Query: 8   RKIVFDIETTG--LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + +  D E  G  L      +  +  V    +   +     F+ P          K  GI
Sbjct: 3   KYVAIDCEMVGVGLKGSQSMLARVSIVNYHGHVILDE----FVLPEEDVTDYR-TKYSGI 57

Query: 66  TDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
               LK K  +F  +  +  D   ++    I H  K D   +             PSR I
Sbjct: 58  RPALLKSKGRAFKEVQQKVADILKDR--IVIGHAVKHDFEALM---------LTHPSRSI 106

Query: 125 -DTLSIARRKHPSSRN--DLNSLCKRY-GITISHRSKHGALLDSHLLSDVYI 172
            DT +    ++P + +   L  L   Y G++I +   H ++ D+     +Y 
Sbjct: 107 RDTSTYKPFRNPKTNSIQSLKKLAAEYLGLSIQNNE-HSSVEDAQATMKLYH 157


>gi|254455766|ref|ZP_05069195.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082768|gb|EDZ60194.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. HTCC7211]
          Length = 481

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 69/190 (36%), Gaps = 30/190 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHG- 64
           M+ +V+DIET    +    IIEIG + L +  K    F      P  R  S  AL ++  
Sbjct: 1   MKYVVWDIETDSAQTDWATIIEIGGILLDENFKELERFSARCRMPQDRVPSATALCINKS 60

Query: 65  ----ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD 119
               +T   L      S + ++F ++     A ++ +++  FD   I  E  +  + P  
Sbjct: 61  NVDLLTKGNLSHYEMLSQVENKFKEW---SPATFLGYSSINFDDEVIRKEFFKSLRKPYL 117

Query: 120 PSR----IIDTLSIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGAL 161
            +       D L+I +                  +    L SL +  G        H AL
Sbjct: 118 TNTEGNVRHDALNIVKAAFAIDDDILKTELNAKGNKSMKLESLARLNG--FESAGAHSAL 175

Query: 162 LDSHLLSDVY 171
            D+ L   V 
Sbjct: 176 FDTELTVKVL 185


>gi|3885327|gb|AAC77855.1| hypothetical protein [Arabidopsis thaliana]
          Length = 227

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 32/175 (18%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR----KNSPEALK 61
           K   +  D+E TGL+ + DRI+EI  +        +      +    +    K       
Sbjct: 24  KQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKMDDWCQT 83

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDF----FNEQNAEWIAHNAKFDVGFINAELQRIN 114
            H   G+T + L    +      +  +F        N     ++   D  F+   +  + 
Sbjct: 84  HHGASGLTKKVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFLFLKKYMPEL- 142

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK------HGALLD 163
              L P  ++D             + + +LC R+   I  R        H A+ D
Sbjct: 143 -AALFPHILVDV------------SSVKALCARW-FPIERRKAPAKKNNHRAMDD 183


>gi|290462053|gb|ADD24074.1| Oligoribonuclease, mitochondrial [Lepeophtheirus salmonis]
          Length = 188

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 53/174 (30%), Gaps = 22/174 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN------ 55
           R N+ R +  D E TGLD + D ++E+  +    +   T     + +             
Sbjct: 5   RSNRDRIVWIDCEMTGLDLEVDVLMEVAVIITDKNLKPTKEGLNIVIHQPDSVLDAMTGF 64

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAK-FDVGFINAE 109
             E+ +  G+T      K       ++  +F   +         +A N+  FD  F+   
Sbjct: 65  PKESHEKTGLTAACRMSKIDVKQAENDICNFIKRECGTTFGRPLLAGNSVGFDAKFLRKY 124

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  +          + T+          +                R  H AL D
Sbjct: 125 MPSVTDILHYRIIDVSTIHECYNLWDREK---------LKFCPKKRKTHRALDD 169


>gi|194290291|ref|YP_002006198.1| oligoribonuclease [Cupriavidus taiwanensis LMG 19424]
 gi|193224126|emb|CAQ70135.1| oligoribonuclease [Cupriavidus taiwanensis LMG 19424]
          Length = 211

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 57/181 (31%), Gaps = 41/181 (22%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K++   I  D+E TGL    DRIIE+  V       T+    +               L 
Sbjct: 11  KSENNLIWLDMEMTGLQPDTDRIIEVAVV------ITDSELNILAEGPVLVIHQSDAVLD 64

Query: 64  GITDE--------FLKDKP-----SFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFI 106
           G+ +          L DK      +     +E   F         +    ++   D  F+
Sbjct: 65  GMDNWNKGTHGRSGLIDKVKASTLTEEQAEAELLAFLKRWVPAGKSPMCGNSICQDRRFM 124

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALL 162
              + ++  +     R +D             + L  LCKR+   I      R  H AL 
Sbjct: 125 ARYMPKL--EAFFHYRNLDV------------STLKELCKRWEPAIHKGFVKRQLHTALA 170

Query: 163 D 163
           D
Sbjct: 171 D 171


>gi|26354889|dbj|BAC41071.1| unnamed protein product [Mus musculus]
          Length = 298

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 60/185 (32%), Gaps = 20/185 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R   ++++  D E  G   +  R+ E+    ++ YS  +  +  ++ P          + 
Sbjct: 65  RPGPIKRVAIDCEMVGTGPQG-RVSELARCSVVSYSG-DVLYDKYIRPE-MPIVDYRTRW 121

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT + +     F     E       +    + H        ++ + Q +         
Sbjct: 122 SGITRQHMHKAIPFQVAQKEILKLL--KGKVVVGH-------ALHNDFQALKYVHPRSQT 172

Query: 123 IIDTLSIARRKHPSS----RNDLNSLC---KRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              T        PSS    R  L  L        I + H+  H ++ D+    ++Y  + 
Sbjct: 173 RDTTYVPNLLSQPSSLIRTRVSLKDLALNLLHKKIQVGHQG-HSSVEDAMTAMELYQLVE 231

Query: 176 VGGSQ 180
           V   Q
Sbjct: 232 VQWEQ 236


>gi|312213530|emb|CBX89960.1| similar to RNA exonuclease [Leptosphaeria maculans]
          Length = 362

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 60/169 (35%), Gaps = 14/169 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGIT 66
           + +  D E  G+  + +R   +  V L+++   ++ +  ++  P+  + +     + GI 
Sbjct: 153 KYVALDCEMVGVGPEPNRDSALARVSLVNFHG-HQVYDSYVQVPHKMEVTDYRTAVSGIE 211

Query: 67  DEFLKD--KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRI 123
            + L+     +F  +  +            + H  K D+  +      R  +D    ++ 
Sbjct: 212 PKHLRPDVARTFDQVRKDLK--ILLAGRILVGHAVKNDLDVLILKHDSRFIRDTSKFTKF 269

Query: 124 IDTLSIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVY 171
                 A    P     L  L  K  G+ I     H ++ D+     +Y
Sbjct: 270 -----RALAAKPGWTPGLKMLADKLLGVQI-QVGAHSSVEDARATMALY 312


>gi|295131162|ref|YP_003581825.1| Oligoribonuclease [Propionibacterium acnes SK137]
 gi|291377019|gb|ADE00874.1| Oligoribonuclease [Propionibacterium acnes SK137]
          Length = 205

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 22/170 (12%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSP---EALK 61
           K   +  D E TGLD  +D +IE+ A+              V + P  +           
Sbjct: 2   KDMLVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRN 61

Query: 62  LH---GI---TDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRIN 114
           +H   G+    D+ L    +   +      +  +   A    +    D  F+  ++ ++ 
Sbjct: 62  MHTTSGLLAELDKGLTMAQAQDQVLDYIRTYVPQAGKAPLAGNTIGTDRSFLAKDMPKLA 121

Query: 115 KDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 +  + ++  +ARR +P          + +G +   +  H AL D
Sbjct: 122 SYVHYRNVDVSSIKELARRWYP----------RAFGHSPEKQGNHRALAD 161


>gi|74152556|dbj|BAE42568.1| unnamed protein product [Mus musculus]
          Length = 224

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLH 63
            R +  D+E TGLD + D+IIE+   +   D +       + +          +   K H
Sbjct: 28  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 87

Query: 64  ----GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
               G+T    +   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 88  HGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQFMK 147

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P            Y       + H AL D
Sbjct: 148 HLHYRIIDVSTVKELCRRWYPED----------YEFAPKKAASHRALDD 186


>gi|290462141|gb|ADD24118.1| Oligoribonuclease, mitochondrial [Lepeophtheirus salmonis]
          Length = 216

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 52/174 (29%), Gaps = 22/174 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKN------ 55
           R N+ R +  D E TGLD + D ++E+   +   +   T     + +             
Sbjct: 33  RSNRDRIVWIDCEMTGLDLEVDVLMEVAVIITDKNLKPTKEGLNIVIHQPDSVLDAMTGF 92

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAK-FDVGFINAE 109
             E+    G+T      K       ++  +F   +         +A N+  FD  F+   
Sbjct: 93  PKESHAKTGLTAACRMSKIDVKQAENDICNFIKRECGTTFGRPLLAGNSVGFDAKFLRKY 152

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  +          + T+          +                R  H AL D
Sbjct: 153 MPSVTDILHYRIIDVSTIHECYNLWDREK---------LKFCPKKRKTHRALDD 197


>gi|313773620|gb|EFS39586.1| exonuclease [Propionibacterium acnes HL074PA1]
 gi|313793857|gb|EFS41881.1| exonuclease [Propionibacterium acnes HL110PA1]
 gi|313801249|gb|EFS42500.1| exonuclease [Propionibacterium acnes HL110PA2]
 gi|313811456|gb|EFS49170.1| exonuclease [Propionibacterium acnes HL083PA1]
 gi|313831196|gb|EFS68910.1| exonuclease [Propionibacterium acnes HL007PA1]
 gi|313834219|gb|EFS71933.1| exonuclease [Propionibacterium acnes HL056PA1]
 gi|313840029|gb|EFS77743.1| exonuclease [Propionibacterium acnes HL086PA1]
 gi|314963788|gb|EFT07888.1| exonuclease [Propionibacterium acnes HL082PA1]
 gi|314974073|gb|EFT18169.1| exonuclease [Propionibacterium acnes HL053PA1]
 gi|314976638|gb|EFT20733.1| exonuclease [Propionibacterium acnes HL045PA1]
 gi|314984301|gb|EFT28393.1| exonuclease [Propionibacterium acnes HL005PA1]
 gi|315079637|gb|EFT51630.1| exonuclease [Propionibacterium acnes HL053PA2]
 gi|315081132|gb|EFT53108.1| exonuclease [Propionibacterium acnes HL078PA1]
 gi|315095417|gb|EFT67393.1| exonuclease [Propionibacterium acnes HL038PA1]
 gi|327328524|gb|EGE70286.1| oligoribonuclease [Propionibacterium acnes HL096PA2]
 gi|327444311|gb|EGE90965.1| exonuclease [Propionibacterium acnes HL043PA2]
 gi|327444807|gb|EGE91461.1| exonuclease [Propionibacterium acnes HL043PA1]
 gi|327452117|gb|EGE98771.1| exonuclease [Propionibacterium acnes HL092PA1]
 gi|328759959|gb|EGF73543.1| oligoribonuclease [Propionibacterium acnes HL099PA1]
          Length = 202

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 24/165 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSP---EALKLH---G 64
            D E TGLD  +D +IE+ A+              V + P  +           +H   G
Sbjct: 5   IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMHTTSG 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +  E L    + +    +  D+          A    +    D  F+  ++ ++      
Sbjct: 65  LLAE-LDKGLTMAQAQDQVLDYIRTYVPQAGKAPLAGNTIGTDRSFLAKDMPKLASYVHY 123

Query: 120 PSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  + ++  +ARR +P          + +G +   +  H AL D
Sbjct: 124 RNVDVSSIKELARRWYP----------RAFGHSPEKQGNHRALAD 158


>gi|255633388|gb|ACU17051.1| unknown [Glycine max]
          Length = 242

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 24/172 (13%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNS--PEALKL 62
           K+  +  D+E TGL+ + DRI+EI  +       KT  +  + +           E  + 
Sbjct: 58  KLPLVWIDLEMTGLNIEVDRILEIACIITDGNLTKTVESPDLVIHQTKECLDRMGEWCQS 117

Query: 63  H----GITDEFLKDKPSFSSIFSEFWDF------FNEQNAEWIAHNAKFDVGFINAELQR 112
           H    G+T + LK   S      +  +F                ++   D  F+   + +
Sbjct: 118 HHAASGLTKKVLKSTISEGEAEEQVIEFVKRYVNVGSYTPHLAGNSIYVDFQFLKKYMPK 177

Query: 113 INKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +          + ++ ++  R +P  +              S  ++H AL D
Sbjct: 178 LASLFSHVLVDVSSVKALCIRWYPKDQKR----------APSKLNRHRALDD 219


>gi|71651495|ref|XP_814425.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70879394|gb|EAN92574.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 284

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 65/197 (32%), Gaps = 24/197 (12%)

Query: 9   KIVFDIETTGLDSKN---DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D E T   ++      IIE   V +   S +    FQ ++ P      S    +L 
Sbjct: 59  YVVLDFEATCERNRRLEEPEIIEFPMVLIDARSHRILTEFQRYVRPVVNPILSDFCTELT 118

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQN--------AEWIAHNAKFDVG-FINAELQRIN 114
           GI    +    +F  +F    +F             +        +D+   + ++L+   
Sbjct: 119 GIKQSVVDAAETFPLVFDAALEFLRGSGYGEAPPLRSYLFVTCGDWDLKTMLPSQLRTTE 178

Query: 115 KD------PLDPSRIIDTLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSH 165
           K       P    R  +     R   P+      DL  +    G+ +  R  H  + D  
Sbjct: 179 KTGTAIVAPSTFRRWCNLKVPMRTIVPTKARGIFDLREMLAAVGLPLKGR-HHSGIDDCR 237

Query: 166 LLSDVYIKMMVGGSQIN 182
            ++ V  +++  G  I 
Sbjct: 238 NIASVVQELLRRGHVIA 254


>gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806]
          Length = 956

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 29/145 (20%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + +D ETT L+ +  +++ IG     + +        ++ P G +        +G    
Sbjct: 367 PVAWDTETTDLNPRVAKLVGIGCCWGKELNAM-----AYI-PIGHQ--------NG---- 408

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              D  +   +  +        N   +  NAKFD+     +   +           DT+ 
Sbjct: 409 ---DNLNLEIVLEKLRPILASDNYPKVFQNAKFDIDVFYHQGITVKGLVF------DTMV 459

Query: 129 IARRKHPSSRNDLNSLCKRY--GIT 151
            +   HP   ++L  LC RY  GIT
Sbjct: 460 ASYVLHPELTHNLEDLCDRYLDGIT 484


>gi|332844739|ref|XP_510574.3| PREDICTED: apoptosis-enhancing nuclease [Pan troglodytes]
          Length = 325

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 55/176 (31%), Gaps = 13/176 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   +  R+ E+    ++ Y   +  +  ++ P     +    +  GIT 
Sbjct: 109 KCVAIDCEMVGTGPRG-RVSELARCSIVSYHG-DVLYDKYIRPE-MPIADYRTRWSGITR 165

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++    F     E       +    + H    D   +     R             + 
Sbjct: 166 QHMRKAVPFQVAQKEILKLL--KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSE 223

Query: 128 SIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                 H  +R  L  L  +     I +     H ++ D+    ++Y +++    +
Sbjct: 224 PG---LHTRARVSLKDLALQLLHKKIQVGQHG-HSSVEDATTAMELY-RLVEVQWE 274


>gi|332291323|ref|YP_004429932.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5]
          Length = 949

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 46/146 (31%), Gaps = 32/146 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             NK   + FD ETTGLD     ++ I                 ++     K   +AL  
Sbjct: 372 NLNKQSSVCFDTETTGLDPLVAELVGIAFSWEAGKG-------YYIPFPESKEEAQAL-- 422

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                              E   FF     E I  N K+D+  +     ++         
Sbjct: 423 -----------------IEELRPFFENTAIEKIGQNLKYDIKVLAKYNVKVKGKLF---- 461

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
             DT+      +P  R++++ L + Y
Sbjct: 462 --DTMLAHYLINPDMRHNMDVLAETY 485


>gi|119622416|gb|EAX02011.1| interferon stimulated exonuclease gene 20kDa-like 1, isoform CRA_b
           [Homo sapiens]
          Length = 324

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 55/176 (31%), Gaps = 13/176 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   +  R+ E+    ++ Y   +  +  ++ P     +    +  GIT 
Sbjct: 109 KCVAIDCEMVGTGPRG-RVSELARCSIVSYHG-DVLYDKYIRPE-MPIADYRTRWSGITR 165

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++    F     E       +    + H    D   +     R             + 
Sbjct: 166 QHMRKAVPFQVAQKEILKLL--KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSE 223

Query: 128 SIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                 H  +R  L  L  +     I +     H ++ D+    ++Y +++    +
Sbjct: 224 PG---LHTRARVSLKDLALQLLHKKIQVGQHG-HSSVEDATTAMELY-RLVEVQWE 274


>gi|13477375|gb|AAH05164.1| AEN protein [Homo sapiens]
          Length = 327

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 55/176 (31%), Gaps = 13/176 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   +  R+ E+    ++ Y   +  +  ++ P     +    +  GIT 
Sbjct: 109 KCVAIDCEMVGTGPRG-RVSELARCSIVSYHG-DVLYDKYIRPE-MPIADYRTRWSGITR 165

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++    F     E       +    + H    D   +     R             + 
Sbjct: 166 QHMRKAVPFQVAQKEILKLL--KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSE 223

Query: 128 SIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                 H  +R  L  L  +     I +     H ++ D+    ++Y +++    +
Sbjct: 224 PG---LHTRARVSLKDLALQLLHKKIQVGQHG-HSSVEDATTAMELY-RLVEVQWE 274


>gi|18028285|gb|AAL56012.1|AF327352_1 hypothetical protein SBBI58 [Homo sapiens]
 gi|18089257|gb|AAH20988.1| Apoptosis enhancing nuclease [Homo sapiens]
 gi|119622414|gb|EAX02009.1| interferon stimulated exonuclease gene 20kDa-like 1, isoform CRA_a
           [Homo sapiens]
 gi|119622415|gb|EAX02010.1| interferon stimulated exonuclease gene 20kDa-like 1, isoform CRA_a
           [Homo sapiens]
 gi|312151562|gb|ADQ32293.1| interferon stimulated exonuclease gene 20kDa-like 1 [synthetic
           construct]
          Length = 325

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 55/176 (31%), Gaps = 13/176 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   +  R+ E+    ++ Y   +  +  ++ P     +    +  GIT 
Sbjct: 109 KCVAIDCEMVGTGPRG-RVSELARCSIVSYHG-DVLYDKYIRPE-MPIADYRTRWSGITR 165

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++    F     E       +    + H    D   +     R             + 
Sbjct: 166 QHMRKAVPFQVAQKEILKLL--KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSE 223

Query: 128 SIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                 H  +R  L  L  +     I +     H ++ D+    ++Y +++    +
Sbjct: 224 PG---LHTRARVSLKDLALQLLHKKIQVGQHG-HSSVEDATTAMELY-RLVEVQWE 274


>gi|266706193|gb|ACY78400.1| OrnA [Streptomyces chattanoogensis]
          Length = 206

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 24/169 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEALK-LH 63
           R +  D E TGL   ND +IE+ A V   + +       V + P     +  PE ++ +H
Sbjct: 4   RMVWIDCEMTGLSLANDALIEVAALVTDSELNVLGDGVDVVIRPPAEALTTMPEVVRAMH 63

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINK 115
              G+ DE L    +     ++   +  +       A    ++   D GF+  ++  +  
Sbjct: 64  TASGLLDE-LDRGTTLEDAEAQVLAYIRQHVPEPGKAPLCGNSVGTDRGFLLRDMPTLEN 122

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + ++  +ARR +P          + Y  +      H AL D
Sbjct: 123 YLHYRIVDVSSVKELARRWYP----------RAYFNSPDKSGNHRALAD 161


>gi|254572319|ref|XP_002493269.1| Protein of unknown function, rich in asparagine residues [Pichia
           pastoris GS115]
 gi|238033067|emb|CAY71090.1| Protein of unknown function, rich in asparagine residues [Pichia
           pastoris GS115]
 gi|328352715|emb|CCA39113.1| Uncharacterized RNA-binding protein C17H9.04c [Pichia pastoris CBS
           7435]
          Length = 641

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 69/240 (28%), Gaps = 56/240 (23%)

Query: 8   RKIVFDIETTG------LDSKNDRIIEIGAV---ELLDYSKTNRTFQVFLCPNGRKNSPE 58
           R IV  I TT              IIE+  V      ++    R   V   P     +P 
Sbjct: 4   RYIVLHINTTANESSQQFKRDPSEIIELAWVLLDPGTNFEIVGRG-SVLAKPFNTPITPL 62

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
              +  +T E +K+  S      E   F    ++  +++   F    +NA   R+     
Sbjct: 63  CTSMTTLTWESVKNAGSLKDAVEELSRFI---DSNLVSNGLSFSFITLNAWDLRLKLPKE 119

Query: 119 DPSRIIDTLSIARRKHP----------------------SSRNDLNSLCKRYGIT----- 151
              R I     A    P                       +   L  +  +         
Sbjct: 120 SRERSI--ALPAYLDLPKYFDLRKEFCRWAQKSSALTTNGNHMSLAYMVSKLETEASLVL 177

Query: 152 --------ISHRSKHGALLDSHLLSDV---YIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200
                    S R  H   +D+ L + V    +K   G  Q     + + ++F  E+ K +
Sbjct: 178 DEDLRSKVNSARRAH---VDAELTAKVAATLLKSNSGLFQKPHDLQRDLEQFLNEKSKVL 234


>gi|159036666|ref|YP_001535919.1| oligoribonuclease [Salinispora arenicola CNS-205]
 gi|157915501|gb|ABV96928.1| Exonuclease RNase T and DNA polymerase III [Salinispora arenicola
           CNS-205]
          Length = 196

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 62/169 (36%), Gaps = 27/169 (15%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS--PEALK-LH---G 64
            D E TGLD  +D++IE+ A+    D +       V +  +       PE +  +H   G
Sbjct: 8   IDCEMTGLDLGSDKLIEVAALVTDPDLNVLGEGVDVVIHADEAALDKMPEIVATMHAKSG 67

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +T+E  +     +       D+      + + A    ++   D GFI  ++ R++     
Sbjct: 68  LTEEVRRSTVGLAEAEDLILDYVTSHVKDPRTAPLCGNSIATDRGFIARDMPRLDNHL-- 125

Query: 120 PSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
             R+ID  SI    RR +P                      H AL D  
Sbjct: 126 HYRMIDVSSIKELCRRWYPRVYFS----------QPQKGLAHRALADVR 164


>gi|74214051|dbj|BAE29442.1| unnamed protein product [Mus musculus]
          Length = 228

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLH 63
            R +  D+E TGLD + D+IIE+   +   D +       + +          +   K H
Sbjct: 32  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 91

Query: 64  ----GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
               G+T    +   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 92  HGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQFMK 151

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P            Y       + H AL D
Sbjct: 152 HLHYRIIDVSTVKELCRRWYPED----------YEFAPKKAASHRALDD 190


>gi|256787574|ref|ZP_05526005.1| oligoribonuclease [Streptomyces lividans TK24]
          Length = 196

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 26/166 (15%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH---G 64
            D E TGL   +D +IE+ A V   + +       + + P  R     PE + ++H   G
Sbjct: 4   IDCEMTGLSLSDDALIEVAALVTDSELNILGEGVDIVIRPPERALETMPEVVREMHTASG 63

Query: 65  ITDEF-----LKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPL 118
           +  E      L D    + + +   +   E   A    ++   D GF+  ++  +     
Sbjct: 64  LLAELDGGTTLADA--EAQVLAYVREHVKEPGKAPLCGNSVGTDRGFLLRDMATLEGYLH 121

Query: 119 DPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                + ++  +ARR +P          + Y  +      H AL D
Sbjct: 122 YRIVDVSSIKELARRWYP----------RAYFNSPEKNGNHRALAD 157


>gi|209525284|ref|ZP_03273826.1| Exonuclease RNase T and DNA polymerase III [Arthrospira maxima
           CS-328]
 gi|209494299|gb|EDZ94612.1| Exonuclease RNase T and DNA polymerase III [Arthrospira maxima
           CS-328]
          Length = 813

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 58/179 (32%), Gaps = 31/179 (17%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            K +   IV D E          I++  A+     +     F    C N +         
Sbjct: 1   MKPQTNFIVIDTE-------GQPILKAMAIVDHQGNLIYEAFDERHCQNPQLIDQ----- 48

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                          +I +EF      Q    I H A+ D+  +    + +   P   S 
Sbjct: 49  ----------SKPLKTIVNEFLAIAGSQ--TIICHYARHDMEVLRNTFRAVGVRPPRLSF 96

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRS-----KHGALLDSHLLSDVYIKMM 175
              +  +A+R  P    N L ++ K+  ++   ++      H A  D+     +Y +M+
Sbjct: 97  Q-CSFELAQRYLPQLGSNSLQTISKQLNLSRDDQTNNRDFLHRAKHDALFTYQLYRRMI 154


>gi|300776334|ref|ZP_07086192.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
 gi|300501844|gb|EFK32984.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
          Length = 173

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 16/173 (9%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   + DIE+ G    +  +I  GAV +    + + TF   L P   + +PE+L + G +
Sbjct: 1   MSYFMVDIESDGPIPGDFSMICFGAVLV--NEELDTTFYGKLKPISEQFNPESLAVSGFS 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRI-NKDPL-DPS 121
            E          +   F ++ N        +I+ N  FD  FI         ++P    S
Sbjct: 59  REETMHFDDPEKVMLAFEEWINTNSRGRPIFISDNNGFDWMFICWYFHHFTGRNPFGFSS 118

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           R +  L     K        ++  +   +  +  + H  + D+   ++V + M
Sbjct: 119 RRLSDLYCGLEK--------DTFAQWKHLRKTEHT-HNPVDDARGNAEVLLYM 162


>gi|145588712|ref|YP_001155309.1| oligoribonuclease [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047118|gb|ABP33745.1| Exonuclease, RNase T and DNA polymerase III [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 195

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 23/164 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----SPEALKLHGIT- 66
            D+E +GL+ + +RI+EI  +    +  T  T  V++                  HG + 
Sbjct: 22  VDMEMSGLNPETERILEIAIIVTDAHLNTIATAPVWVVHQDDAILDAMDAWNKGTHGRSG 81

Query: 67  ------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                    L +    +   +    +     A    +    D  F+   + ++       
Sbjct: 82  LIDKVKTSTLDEAAVEAECIAFLKQYIKAGIAPMCGNTIGQDRRFMAKYMPKLEAYFHYR 141

Query: 121 SRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + TL  + +R HP        L K      +    H AL D
Sbjct: 142 NVDVSTLKELCKRWHPE-------LVK----GFTKNQAHTALAD 174


>gi|4929697|gb|AAD34109.1|AF151872_1 CGI-114 protein [Homo sapiens]
          Length = 205

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLH 63
            R +  D+E TGLD + D+IIE+   +   D +       + +          +   K H
Sbjct: 9   QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 68

Query: 64  ----GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
               G+T    +   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 69  HGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMK 128

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P          + Y       + H AL D
Sbjct: 129 HLHYRIIDVSTVKELCRRWYP----------EEYEFAPKKAASHRALDD 167


>gi|183983834|ref|YP_001852125.1| oligoribonuclease Orn [Mycobacterium marinum M]
 gi|183177160|gb|ACC42270.1| oligoribonuclease Orn [Mycobacterium marinum M]
          Length = 215

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 29/174 (16%)

Query: 7   MRK--IVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPE---AL 60
           MR+  +  D E TGLD  +D++IEI A V   D +       V +  +    S       
Sbjct: 1   MREELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVIHADDAALSSMVDVVA 60

Query: 61  KLH---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQR 112
            +H   G+T+E        ++  +   D+  E     + A    ++   D  FI  ++  
Sbjct: 61  DMHSRSGLTEEVRASTVDMATAEAMVLDYIGEHVKQPKTAPLAGNSIATDRSFIARDMPA 120

Query: 113 INKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  D     R+ID  SI    RR +P            +G        H AL D
Sbjct: 121 L--DAFLHYRMIDVSSIKELCRRWYPR---------IYFGQP-PKGLAHRALAD 162


>gi|149041576|gb|EDL95417.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_a
           [Rattus norvegicus]
          Length = 254

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLH 63
            R +  D+E TGLD + D+IIE+   +   D +       + +          +   K H
Sbjct: 41  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 100

Query: 64  ----GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
               G+T    +   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 101 HGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQFMK 160

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P            Y       + H AL D
Sbjct: 161 HLHYRIIDVSTVKELCRRWYPED----------YEFAPKKAASHRALDD 199


>gi|77748300|gb|AAI06465.1| LOC733393 protein [Xenopus laevis]
          Length = 368

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 22/172 (12%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G    N R  ++    ++++   +  +  ++ P     +    +  GI  
Sbjct: 193 KAVAIDCEMVGTGP-NGRNSDLARCSIVNWFG-DVMYDKYIKPKS-PVTDYRTRWSGIRR 249

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT- 126
           E L +   F     E     +      I H    D   +N         P + +R  DT 
Sbjct: 250 EHLVNATPFDVAQKEILKILS--GKVVIGHAIHNDYKALNHFH------PKEMTR--DTS 299

Query: 127 ---LSIARRKHPSSRN-DLNSLCKRY---GITISHRSKHGALLDSHLLSDVY 171
              L   R   P      L  L K+     I  + R  H ++ D+    ++Y
Sbjct: 300 KIPLLNRRAGFPEKEVASLKRLAKQLLHKDIQ-TGRQGHSSVEDAKTTMELY 350


>gi|330804170|ref|XP_003290071.1| hypothetical protein DICPUDRAFT_154549 [Dictyostelium purpureum]
 gi|325079825|gb|EGC33407.1| hypothetical protein DICPUDRAFT_154549 [Dictyostelium purpureum]
          Length = 262

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 15  ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP 74
           ETTGL S  + I E+     L+       F     P     +PE+ K++ +T   L    
Sbjct: 149 ETTGLTSNAENI-ELSC-ACLNG----EAFYRKSNPTI-SITPESTKINKLTCHDLAGHQ 201

Query: 75  SFSSIFSEFWDFFNEQNAE------WIAHNAKFDVGFINAELQR 112
            +  +  EF++F  +Q+++       IAHN K+D G I   L +
Sbjct: 202 YWEKVEEEFFNFIVQQSSDDDAPIYIIAHNEKYDRGRIAFHLTK 245


>gi|326529429|dbj|BAK04661.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 345

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 59/193 (30%), Gaps = 25/193 (12%)

Query: 25  RIIEIGAVELLDY--SKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFS 81
            IIE  AV L+D    +    F+ ++ P      +    +L GI  E +           
Sbjct: 38  EIIEFPAV-LVDGATGRIESAFRRYVRPKHHPVLTQFCRELTGIRQEDVDGGVDLGEALW 96

Query: 82  EFWDFFNEQNAEWIAHNAK-----------FDVGFINAELQRINKDPLDPSRIIDTLSIA 130
               +     A   A N +           +D   +     R     ++     D     
Sbjct: 97  LHDAWLKAATAG--AGNRRSGRLAVVTWGDWDCRTMLEFECRFKG--IEKPSYFDQWINL 152

Query: 131 RRKHP-----SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           R           R +L    +  G+    R  H  L D+   + +  ++M  G ++    
Sbjct: 153 RVPFQVALGGGGRVNLQEAVRAAGLDWEGR-LHCGLDDALNTARLLAEIMRRGVKMTITG 211

Query: 186 KTNEDRFFKEEKK 198
                  F++E++
Sbjct: 212 SLAPLLPFEQEQQ 224


>gi|294499220|ref|YP_003562920.1| exonuclease family protein [Bacillus megaterium QM B1551]
 gi|294349157|gb|ADE69486.1| exonuclease family protein [Bacillus megaterium QM B1551]
          Length = 311

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 70/185 (37%), Gaps = 12/185 (6%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            I FD E      G+  ++   I +GAV+    ++    F  ++ P  R   S    +L 
Sbjct: 7   FIFFDFEMLCSNKGMPFEDMEAIRLGAVKYNIETEDIEFFDRYIQPTKRVSLSRFCKELT 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
           GI D  L    +F ++F +F  +    + + + + +   D+  +  +  +          
Sbjct: 67  GIKDTDLVGASNFKNVFEDFLTWIGGIKKSRFFSWSTS-DLSRLKIDAAKHEISLATIKK 125

Query: 120 -PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
              R +D   I  ++   +   + +    Y +    +  H  + D++    +Y+  +   
Sbjct: 126 IEQRYVDFQEIFTKRVSENNVSVENGLALYNLQFEGKK-HNPMYDAYNTLRIYLSFLNEP 184

Query: 179 SQINF 183
            Q +F
Sbjct: 185 VQSDF 189


>gi|115637272|ref|XP_796324.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115942346|ref|XP_001192607.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 361

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 74/188 (39%), Gaps = 16/188 (8%)

Query: 10  IVFDIETTG--LDSKN--DRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            V D+E T   ++  +    IIE   V       +   TF  F  P      S    +L 
Sbjct: 164 CVIDVEATCQEINPVDYIHEIIEFPIVLLNTKTLQIVNTFDAFCKPVINPQLSKFCSQLT 223

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINKDPL 118
            I+ + +     F ++  +   +  ++      +  IA +   D+  +  +LQ +  +  
Sbjct: 224 NISQKMVDKADEFPTVLEKAERWMRQKGLGSKHSFAIATDCSLDMD-LYLKLQCLVSEIP 282

Query: 119 DPSRIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P    + ++I++     + + R  L ++    G+       H  + D+  ++ V ++++
Sbjct: 283 YPQYAKEWVNISKVFANLYKTKRLPLRAMLDSTGLAFIG-QPHRGIDDARNIARVALQLI 341

Query: 176 VGGSQINF 183
             G+++ +
Sbjct: 342 EDGAEMKY 349


>gi|50955048|ref|YP_062336.1| oligoribonuclease [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|81826639|sp|Q6AEG5|ORN_LEIXX RecName: Full=Oligoribonuclease
 gi|50951530|gb|AAT89231.1| oligoribonuclease [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 207

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 22/174 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGR---KNSP 57
           +  +  R +  D E TGLD   D ++EI  V    D +  +    + + P+       + 
Sbjct: 1   MATSSDRLVWIDCEMTGLDLAVDELVEIAVVITDFDLNVLDPGLSIVIKPDASALDNMND 60

Query: 58  EALKLH---GITDE---FLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAEL 110
              ++H   G+ +E    +    +          F    + A    +    D  F+   +
Sbjct: 61  FVREMHTTSGLIEEIPGGVSLAEAEYEALEYVLRFAPAARTAPLAGNTIGTDRMFLAKYM 120

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R++      +  + ++  +ARR  P          + Y         H AL D
Sbjct: 121 PRLDTHLHYRNVDVSSIKELARRWFP----------RVYFNAPEKNGGHRALAD 164


>gi|83745794|ref|ZP_00942851.1| Oligoribonuclease [Ralstonia solanacearum UW551]
 gi|83727484|gb|EAP74605.1| Oligoribonuclease [Ralstonia solanacearum UW551]
          Length = 289

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 29/175 (16%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+    +  D+E TGL  +NDRIIE+  V             V +     +        +
Sbjct: 95  KSDNNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQSDEILDGMDAWN 154

Query: 64  -------GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAELQR 112
                  G+ D+      + +   ++  DF      +  +    ++   D  F+   + +
Sbjct: 155 KGTHGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPK 214

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           +  +     R +D             + L  LCKR+   I+     R +H A  D
Sbjct: 215 L--EAYFHYRNLDV------------STLKELCKRWQPAIAKGFIKRQQHTAYAD 255


>gi|156408724|ref|XP_001642006.1| predicted protein [Nematostella vectensis]
 gi|156229147|gb|EDO49943.1| predicted protein [Nematostella vectensis]
          Length = 165

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 12/166 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +KI  D E  G+ S+  + + +  V +++ + +    +  ++ P  R        + GI 
Sbjct: 3   KKIAIDCEFVGVGSEGAKHM-LARVSIVNSHGRVV--YDKYVAPEERVIDYR-TAVSGIR 58

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              LKD P F ++  E  D    Q    I H  K D+  +     R +       +    
Sbjct: 59  SLDLKDAPDFKTVQKEVSDIL--QGRIVIGHALKHDLQVLFLAHPRKDIRDTSKYKPFQK 116

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           +     KHP     L  L K    +I    +H ++ D+     +Y 
Sbjct: 117 IVQV-LKHP----SLKKLSKEILHSIIQEGEHCSIQDAQAAMRLYC 157


>gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
 gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
          Length = 905

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 27/151 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+R         D ETTGLD     ++ I                  + P+     P   
Sbjct: 321 MMRIAAAPLASLDTETTGLDPMRAELVGI---------------SFSVEPHHGAYIPLGH 365

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +  G     +  +     +  +   +  + +A  +  N KFD          +       
Sbjct: 366 RYTG-----VPRQLPLDFVLEKLKPWLTDPSAPKLGQNLKFDRHVFANHGIGLKGI---- 416

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLC-KRYGI 150
             + DTL  +        +D+++L  +  GI
Sbjct: 417 --VHDTLLQSYVFESHRPHDMDNLALRHLGI 445


>gi|297559543|ref|YP_003678517.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296843991|gb|ADH66011.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 216

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 26/166 (15%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNS---PEALKLH---G 64
            D E TGLD + D +IE+  +         +    V + P              +H   G
Sbjct: 8   IDCEMTGLDFERDALIEVACLITDGELNILDEGVDVVIRPPQAALDRMGDFVRDMHTTSG 67

Query: 65  ITDEF---LKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           + +E    +  + +   +      +  E + A    ++   D  F+  +++RI  D    
Sbjct: 68  LLEELDKGVSLQEAEDLVLEHIRRYVTEPRKAPLCGNSIATDRTFLARDMKRI--DEFLH 125

Query: 121 SRIIDTLSIA---RRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R++D  SI    RR +P          + Y  +      H AL D
Sbjct: 126 YRMVDVSSIKELLRRWYP----------RVYYASPEKNGGHRALAD 161


>gi|172037170|ref|YP_001803671.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
 gi|171698624|gb|ACB51605.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
          Length = 970

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 27/140 (19%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + +D ETT L+ +   ++ IG     + +        ++ P G K   +  K       
Sbjct: 381 PVAWDTETTDLNPRQANLVGIGCCWGNNPTDI-----AYI-PIGHKQGKQLKK------- 427

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                     +           +   +  N KFD      +   ++          DT+ 
Sbjct: 428 --------EQVLDSLRTILESSDYPKVFQNTKFDRLIFKHQAINLDGVVF------DTML 473

Query: 129 IARRKHPSSRNDLNSLCKRY 148
            +   HP   + L+ LC++Y
Sbjct: 474 ASYVLHPEKSHKLSELCEQY 493


>gi|323347541|gb|EGA81809.1| Rex2p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 217

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 54/142 (38%), Gaps = 19/142 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLC--PNGR-KNSPEAL 60
            D E TGLD  NDRIIEI  +    +         + +  ++  +   P    K +   +
Sbjct: 58  IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCI 117

Query: 61  KLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQR 112
           + H   G+T + L  + + + +  E  ++      ++       ++   D  F+  E  +
Sbjct: 118 EHHGNSGLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRLFMVREFPK 177

Query: 113 INKDPLDPSRIIDTLSIARRKH 134
           +          + ++    R+H
Sbjct: 178 VIDHLFYRIVDVSSIMEVARRH 199


>gi|171463904|ref|YP_001798017.1| Exonuclease RNase T and DNA polymerase III [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193442|gb|ACB44403.1| Exonuclease RNase T and DNA polymerase III [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 198

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 29/167 (17%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL----CPNGRKNSPEALKLHG--- 64
            D+E +GL+ + +RI+EI  +    +  T  T  V++                  HG   
Sbjct: 25  VDMEMSGLNPETERILEIAIIVTDAHLNTIATAPVWVMHQENAVLDAMDAWNKGTHGRSG 84

Query: 65  -ITD---EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            I       L +    +   +    +     A    +    D  F+   + ++  +    
Sbjct: 85  LIDKVKASTLDEAAVEAECIAFLKKYIKAGIAPMCGNTIGQDRRFMAKYMSKL--ESYFH 142

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGALLD 163
            R ID             + L  LCKR+   +    + +  H AL D
Sbjct: 143 YRNIDV------------STLKELCKRWHPELVKGFTKKQAHTALAD 177


>gi|148675139|gb|EDL07086.1| interferon stimulated exonuclease gene 20-like 1, isoform CRA_c
           [Mus musculus]
          Length = 329

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 20/185 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R   ++ +  D E  G   +  R+ E+    ++ YS  +  +  ++ P          + 
Sbjct: 96  RPGPIKCVAIDCEMVGTGPQG-RVSELARCSVVSYSG-DVLYDKYIRPE-MPIVDYRTRW 152

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT + +     F     E       +    + H        ++ + Q +         
Sbjct: 153 SGITRQHMHKAIPFQVAQKEILKLL--KGKVVVGH-------ALHNDFQALKYVHPRSQT 203

Query: 123 IIDTLSIARRKHPSS----RNDLNSLC---KRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              T        PSS    R  L  L        I + H+  H ++ D+    ++Y  + 
Sbjct: 204 RDTTYVPNLLSQPSSLIRTRVSLKDLALNLLHKKIQVGHQG-HSSVEDAMTAMELYQLVE 262

Query: 176 VGGSQ 180
           V   Q
Sbjct: 263 VQWEQ 267


>gi|242397470|ref|NP_080807.3| apoptosis-enhancing nuclease isoform 1 [Mus musculus]
 gi|81916898|sp|Q9CZI9|AEN_MOUSE RecName: Full=Apoptosis-enhancing nuclease; AltName:
           Full=Interferon-stimulated 20 kDa exonuclease-like 1
 gi|12849373|dbj|BAB28314.1| unnamed protein product [Mus musculus]
 gi|18490451|gb|AAH22614.1| Aen protein [Mus musculus]
 gi|74198450|dbj|BAE39708.1| unnamed protein product [Mus musculus]
 gi|148675138|gb|EDL07085.1| interferon stimulated exonuclease gene 20-like 1, isoform CRA_b
           [Mus musculus]
 gi|148675140|gb|EDL07087.1| interferon stimulated exonuclease gene 20-like 1, isoform CRA_b
           [Mus musculus]
          Length = 336

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 20/185 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R   ++ +  D E  G   +  R+ E+    ++ YS  +  +  ++ P          + 
Sbjct: 103 RPGPIKCVAIDCEMVGTGPQG-RVSELARCSVVSYSG-DVLYDKYIRPE-MPIVDYRTRW 159

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT + +     F     E       +    + H        ++ + Q +         
Sbjct: 160 SGITRQHMHKAIPFQVAQKEILKLL--KGKVVVGH-------ALHNDFQALKYVHPRSQT 210

Query: 123 IIDTLSIARRKHPSS----RNDLNSLC---KRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              T        PSS    R  L  L        I + H+  H ++ D+    ++Y  + 
Sbjct: 211 RDTTYVPNLLSQPSSLIRTRVSLKDLALNLLHKKIQVGHQG-HSSVEDAMTAMELYQLVE 269

Query: 176 VGGSQ 180
           V   Q
Sbjct: 270 VQWEQ 274


>gi|26327783|dbj|BAC27632.1| unnamed protein product [Mus musculus]
          Length = 366

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 20/185 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R   ++ +  D E  G   +  R+ E+    ++ YS  +  +  ++ P          + 
Sbjct: 133 RPGPIKCVAIDCEMVGTGPQG-RVSELARCSVVSYSG-DVLYDKYIRPE-MPIVDYRTRW 189

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT + +     F     E       +    + H        ++ + Q +         
Sbjct: 190 SGITRQHMHKAIPFQVAQKEILKLL--KGKVVVGH-------ALHNDFQALKYVHPRSQT 240

Query: 123 IIDTLSIARRKHPSS----RNDLNSLC---KRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              T        PSS    R  L  L        I + H+  H ++ D+    ++Y  + 
Sbjct: 241 RDTTYVPNLLSQPSSLIRTRVSLKDLALNLLHKKIQVGHQG-HSSVEDAMTAMELYQLVE 299

Query: 176 VGGSQ 180
           V   Q
Sbjct: 300 VQWEQ 304


>gi|242397474|ref|NP_001156411.1| apoptosis-enhancing nuclease isoform 2 [Mus musculus]
 gi|74177900|dbj|BAE39034.1| unnamed protein product [Mus musculus]
 gi|74188868|dbj|BAE39210.1| unnamed protein product [Mus musculus]
 gi|74227122|dbj|BAE38348.1| unnamed protein product [Mus musculus]
          Length = 298

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 20/185 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R   ++ +  D E  G   +  R+ E+    ++ YS  +  +  ++ P          + 
Sbjct: 65  RPGPIKCVAIDCEMVGTGPQG-RVSELARCSVVSYSG-DVLYDKYIRPE-MPIVDYRTRW 121

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT + +     F     E       +    + H        ++ + Q +         
Sbjct: 122 SGITRQHMHKAIPFQVAQKEILKLL--KGKVVVGH-------ALHNDFQALKYVHPRSQT 172

Query: 123 IIDTLSIARRKHPSS----RNDLNSLC---KRYGITISHRSKHGALLDSHLLSDVYIKMM 175
              T        PSS    R  L  L        I + H+  H ++ D+    ++Y  + 
Sbjct: 173 RDTTYVPNLLSQPSSLIRTRVSLKDLALNLLHKKIQVGHQG-HSSVEDAMTAMELYQLVE 231

Query: 176 VGGSQ 180
           V   Q
Sbjct: 232 VQWEQ 236


>gi|194239666|ref|NP_073604.3| apoptosis-enhancing nuclease [Homo sapiens]
 gi|296434390|sp|Q8WTP8|AEN_HUMAN RecName: Full=Apoptosis-enhancing nuclease; AltName:
           Full=Interferon-stimulated 20 kDa exonuclease-like 1
          Length = 325

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 52/179 (29%), Gaps = 19/179 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIG---AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + +  D E  G   +  R+ E+     V           +  ++ P     +    +  G
Sbjct: 109 KCVAIDCEMVGTGPRG-RVSELARCSIVSYHGNVL----YDKYIRPE-MPIADYRTRWSG 162

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT + ++    F     E       +    + H    D   +     R            
Sbjct: 163 ITRQHMRKAVPFQVAQKEILKLL--KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNF 220

Query: 125 DTLSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
            +       H  +R  L  L  +     I +     H ++ D+    ++Y +++    +
Sbjct: 221 LSEPG---LHTRARVSLKDLALQLLHKKIQVGQHG-HSSVEDATTAMELY-RLVEVQWE 274


>gi|242064994|ref|XP_002453786.1| hypothetical protein SORBIDRAFT_04g017420 [Sorghum bicolor]
 gi|241933617|gb|EES06762.1| hypothetical protein SORBIDRAFT_04g017420 [Sorghum bicolor]
          Length = 246

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 64/172 (37%), Gaps = 26/172 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAV-------ELLDYS--KTNRTFQVFLCPNGRKNS 56
           +M  +  D+E TGLD   DRI+EI  +       + ++       ++            +
Sbjct: 64  RMPLVWIDLEMTGLDITKDRILEIACIITDGKLTKQIEGPDLVIGQSKDCLDNMGEWCKT 123

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKF-DVGFINAELQR 112
             A    G+T+  L+ + S     ++  DF  +        +A N+ + D+ F+   + +
Sbjct: 124 HHAAS--GLTERVLQSELSEHDAEAKVLDFVRKHINSGTPLLAGNSVYVDLLFLKKYMPQ 181

Query: 113 INKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +          + + +++  R +P  R            T   +  H A+ D
Sbjct: 182 LAAVFSHVIVDVSSIMALCVRWYPKER----------KQTPRKQKTHRAMDD 223


>gi|19551498|ref|NP_599500.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum ATCC
           13032]
 gi|62389145|ref|YP_224547.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum ATCC
           13032]
 gi|21323011|dbj|BAB97640.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324478|emb|CAF18818.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease
           [Corynebacterium glutamicum ATCC 13032]
          Length = 360

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 5/108 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +   I+++G+     R++ I  V L    +   TF   L     K  P    LHG+T+E
Sbjct: 27  FVSVSIQSSGIHPSTSRMVTIDLVTLSPNLEPVETFHAVLD---SKTDPGPFHLHGVTEE 83

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
                  F  I        + +    + HNA    GFI +E +R   D
Sbjct: 84  EFASAKRFGQILKSLDRLIDGR--TLLIHNAARSWGFIVSEAKRAMND 129


>gi|305680783|ref|ZP_07403590.1| oligoribonuclease [Corynebacterium matruchotii ATCC 14266]
 gi|305658988|gb|EFM48488.1| oligoribonuclease [Corynebacterium matruchotii ATCC 14266]
          Length = 209

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 24/177 (13%)

Query: 1   MIRKNK-MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRK---N 55
           M   +K  R +  D+E TGLD     I+E+ A +   D +       V +  +  +    
Sbjct: 1   MADMDKHDRIVWIDLEMTGLDIHEHTIVEVAALITDADLNVLGEGVDVVVHASEEELGQM 60

Query: 56  SPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFIN 107
           +     +H   G+  E  + K +         +        E  A    ++   D GFI 
Sbjct: 61  NEFVTNMHESSGLLAEIRESKVTLKEAEDAVLELIAKHCDLEHPAPLAGNSIGTDRGFIR 120

Query: 108 AELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             + R+++        + T+  +ARR  P                      H AL D
Sbjct: 121 EYMPRLDEALHYRMIDVSTVKELARRWAPRVYYH----------QPEKDMSHRALAD 167


>gi|253578712|ref|ZP_04855983.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849655|gb|EES77614.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 319

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 27/125 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +K     + +DIETTGL   +  +  IGAV        + T+  +               
Sbjct: 5   QKYNFTPVFYDIETTGLSRNSTYLYLIGAV-----GIEDETWNFY--------------- 44

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-PLDP 120
                   ++     +I   F  F  + +   I++N  +FD  ++ A  ++     P   
Sbjct: 45  ----QWMAENANEEETILRIFSQFLQQCDL-LISYNGDRFDQPYLEARYEKYGIPSPFTG 99

Query: 121 SRIID 125
            + +D
Sbjct: 100 KQSLD 104


>gi|154294523|ref|XP_001547702.1| hypothetical protein BC1G_13864 [Botryotinia fuckeliana B05.10]
 gi|150844704|gb|EDN19897.1| hypothetical protein BC1G_13864 [Botryotinia fuckeliana B05.10]
          Length = 333

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 15/168 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D E  G+    DR + +  V ++++  T + +  F+ P           + G++ 
Sbjct: 144 KYIGIDCEMVGVGGSEDRSV-LARVSIVNFHGT-QVYDSFVRPKEFVTDWR-THVSGVST 200

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +     F  +  +  +    +    + H  K D+  +     + +             
Sbjct: 201 KNMATAREFDEVQRDVAEILKGR--ILVGHAIKNDLEAMILSHPKRDIRDTSKFSGF--- 255

Query: 128 SIARRKHPSSRN-DLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIK 173
               RK+ + R   L  L K   G+ I     H ++ D+     ++ K
Sbjct: 256 ----RKYSNGRTPSLKKLSKEILGVDIQGGE-HSSIEDARATILLFRK 298


>gi|152965734|ref|YP_001361518.1| exonuclease RNase T and DNA polymerase III [Kineococcus
           radiotolerans SRS30216]
 gi|151360251|gb|ABS03254.1| Exonuclease RNase T and DNA polymerase III [Kineococcus
           radiotolerans SRS30216]
          Length = 218

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 32/206 (15%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL- 62
            +K   + FD ETTGL     +  EI  V       T R  + FL     +  P AL + 
Sbjct: 1   MSKRPLVFFDTETTGLGPGR-QAWEIALVRREPDG-TERPLEFFLPIEEVRAEPGALDIG 58

Query: 63  -------HGITDEFLKDKPSFSS-------------------IFSEFWDFFNE--QNAEW 94
                  HGI    +  +P F++                      +      +    A  
Sbjct: 59  RYYARHPHGIAISTIPAQPPFTTPKPADAPRPVPQEPGPVVLAVPKAARLLAQWTSGATI 118

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA-RRKHPSSRNDLNSLCKRYGITIS 153
           +  N  FDV  +   ++     P    R  D  ++A           L +      +TI 
Sbjct: 119 VGANPAFDVQILERLVRTDGHAPRWHYRTRDVEAMAVGFIGDEDLGGLAACAAALDVTID 178

Query: 154 HRSKHGALLDSHLLSDVYIKMMVGGS 179
              +H A+ D   +  +Y  +++G  
Sbjct: 179 PDLEHTAMGDVRTVMAIYDAVILGER 204


>gi|329937943|ref|ZP_08287425.1| oligoribonuclease [Streptomyces griseoaurantiacus M045]
 gi|329302900|gb|EGG46789.1| oligoribonuclease [Streptomyces griseoaurantiacus M045]
          Length = 200

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 26/170 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH 63
           R +  D E TGL   +D +IE+ A V   + +       + + P        PE + ++H
Sbjct: 4   RMVWIDCEMTGLSLSSDALIEVAALVTDSELNVLGEGVDIVIRPPDEALETMPEVVREMH 63

Query: 64  ---GITDEFLKD---KPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKD 116
              G+  E         +   + +   +   E + A    ++   D GF+  ++  +  +
Sbjct: 64  TSSGLLSELASGTTMADAEERVLAYVREHVKEPRKAPLCGNSVGTDRGFLARDMPSL--E 121

Query: 117 PLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                RI+D  S+   ARR +P          + Y  +      H AL D
Sbjct: 122 EYLHYRIVDVSSVKELARRWYP----------RAYFNSPEKNGNHRALAD 161


>gi|50546176|ref|XP_500615.1| YALI0B07689p [Yarrowia lipolytica]
 gi|74689828|sp|Q6CFE7|REXO3_YARLI RecName: Full=RNA exonuclease 3
 gi|49646481|emb|CAG82848.1| YALI0B07689p [Yarrowia lipolytica]
          Length = 757

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 60/172 (34%), Gaps = 30/172 (17%)

Query: 10  IVFDIET--TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  D E   T L       +E+  V  +DY    +T    + P GR       +  GI+D
Sbjct: 598 VAVDCEMLYTSLG------MELCRVTCIDYHG-KKTLDRVVRPTGRILDYN-TRFSGISD 649

Query: 68  --EFLK-------DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             E +        D  SF           N+Q    + H  + D+  +           L
Sbjct: 650 INEPIITESGEKGDSISFEEAHRLILKLINKQ-TILVGHGLENDLIAMR----------L 698

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
              RIIDT  +    +P  +  L +L  +Y        +H ++ D+    DV
Sbjct: 699 IHDRIIDTSILYPDFNPRYKTALKTLALKYLKRTIQTGEHDSMEDALAALDV 750


>gi|295704562|ref|YP_003597637.1| exonuclease family protein [Bacillus megaterium DSM 319]
 gi|294802221|gb|ADF39287.1| exonuclease family protein [Bacillus megaterium DSM 319]
          Length = 311

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 73/184 (39%), Gaps = 10/184 (5%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63
            I FD E      G+  ++   I +GAV+    ++    F  ++ P      S    +L 
Sbjct: 7   FIFFDFEMLCSNKGMPFEDMEAIRLGAVKYNIETENIEFFDRYIQPTKSVSLSRFCTELT 66

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGF-INAELQRINKDPLD-- 119
           GI D  L    +F ++F +F  +    + + + + +      F I+AE   I+   +   
Sbjct: 67  GIKDTDLVGASNFKNVFEDFLTWIGGIKKSRFFSWSTSDLSRFKIDAEKHEISLATIKKI 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             R +D  +I  ++   +   + +    Y +    +  H  + D++    +Y+  +    
Sbjct: 127 EQRYVDFQAIFTKRVSKNNVSVENGLALYNLQFEGKK-HNPMYDAYNTLRIYLSFLHEPV 185

Query: 180 QINF 183
           Q +F
Sbjct: 186 QSDF 189


>gi|327349600|gb|EGE78457.1| exonuclease [Ajellomyces dermatitidis ATCC 18188]
          Length = 727

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 67/209 (32%), Gaps = 30/209 (14%)

Query: 12  FDIE---TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            D E   T G  S+  R+  +      D           + P  +       +  GIT E
Sbjct: 351 LDCEMCITEGGSSQLTRVSLVSW----DGEVVLDE---LVKPE-KPIIDYLTRFSGITKE 402

Query: 69  FLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L    +    +               I H+   D+  +           L    IIDT 
Sbjct: 403 MLDPVTTRLPDVQQRLLSLVGPH-TILIGHSLNSDLSALK----------LTHPFIIDTS 451

Query: 128 SIARRKHPSS---RNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGSQIN 182
            I    HP     ++ L  L ++Y G  I      H ++ D+  + ++  +    G Q  
Sbjct: 452 IIYP--HPRGSPLKSSLKWLSQKYLGKEIQKGQAGHDSIEDARAVLELVKQKCEKGEQWG 509

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
            G  +NE  F +  + +VP  +     K 
Sbjct: 510 TGDASNESIFRRLSRASVPGRAASGATKE 538


>gi|239608400|gb|EEQ85387.1| exonuclease [Ajellomyces dermatitidis ER-3]
          Length = 767

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 67/209 (32%), Gaps = 30/209 (14%)

Query: 12  FDIE---TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            D E   T G  S+  R+  +      D           + P  +       +  GIT E
Sbjct: 391 LDCEMCITEGGSSQLTRVSLVSW----DGEVVLDE---LVKPE-KPIIDYLTRFSGITKE 442

Query: 69  FLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L    +    +               I H+   D+  +           L    IIDT 
Sbjct: 443 MLDPVTTRLPDVQQRLLSLVGPH-TILIGHSLNSDLSALK----------LTHPFIIDTS 491

Query: 128 SIARRKHPSS---RNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGSQIN 182
            I    HP     ++ L  L ++Y G  I      H ++ D+  + ++  +    G Q  
Sbjct: 492 IIYP--HPRGSPLKSSLKWLSQKYLGKEIQKGQAGHDSIEDARAVLELVKQKCEKGEQWG 549

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
            G  +NE  F +  + +VP  +     K 
Sbjct: 550 TGDASNESIFRRLSRASVPGRAASGATKE 578


>gi|261203129|ref|XP_002628778.1| exonuclease [Ajellomyces dermatitidis SLH14081]
 gi|239586563|gb|EEQ69206.1| exonuclease [Ajellomyces dermatitidis SLH14081]
          Length = 727

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 67/209 (32%), Gaps = 30/209 (14%)

Query: 12  FDIE---TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            D E   T G  S+  R+  +      D           + P  +       +  GIT E
Sbjct: 351 LDCEMCITEGGSSQLTRVSLVSW----DGEVVLDE---LVKPE-KPIIDYLTRFSGITKE 402

Query: 69  FLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L    +    +               I H+   D+  +           L    IIDT 
Sbjct: 403 MLDPVTTRLPDVQQRLLSLVGPH-TILIGHSLNSDLSALK----------LTHPFIIDTS 451

Query: 128 SIARRKHPSS---RNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGSQIN 182
            I    HP     ++ L  L ++Y G  I      H ++ D+  + ++  +    G Q  
Sbjct: 452 IIYP--HPRGSPLKSSLKWLSQKYLGKEIQKGQAGHDSIEDARAVLELVKQKCEKGEQWG 509

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
            G  +NE  F +  + +VP  +     K 
Sbjct: 510 TGDASNESIFRRLSRASVPGRAASGATKE 538


>gi|170700979|ref|ZP_02891961.1| Exonuclease RNase T and DNA polymerase III [Burkholderia ambifaria
           IOP40-10]
 gi|170134119|gb|EDT02465.1| Exonuclease RNase T and DNA polymerase III [Burkholderia ambifaria
           IOP40-10]
          Length = 206

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 58/171 (33%), Gaps = 21/171 (12%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVE---LLDYSKTNRTFQVFLCPNG-RKNSPEA 59
           +N++  +  D+E TGLD  NDRIIEI  V     LD +     F +        K     
Sbjct: 15  RNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDVAVEGPVFAIHQSDETLAKMDDWN 74

Query: 60  LKLHG----ITD---EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
              HG    I       + +  + + + +    + +   +    ++   D  F+   +  
Sbjct: 75  KSTHGRSGLIDRVRASTVTEADAAAQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPE 134

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +     +  + TL    R+   +                 R+ H AL D
Sbjct: 135 FERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 175


>gi|320164333|gb|EFW41232.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 662

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 73/215 (33%), Gaps = 35/215 (16%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           +   + P  R       +  GIT + L++   +               NA  + H+ + D
Sbjct: 368 YDELIKP-ARPIVDYCTRYSGITPDMLENVTSTLKDAQDAVLRLI-PSNAILVGHSLEND 425

Query: 103 VGFINAELQRINKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRY--GITISHRSKHG 159
           +  +           +   +I+DT L+ +  +  + +  L  L + Y   I  +    H 
Sbjct: 426 LNVLK----------IIHHQIVDTALAYSHTRGSNFKPSLRWLTETYLKRIIQADEGGHN 475

Query: 160 ALLDSHLLSDVY-IKMMVGGSQINFGFKTNEDRFFK------EEKKTVPNISLLKRDKP- 211
              D+    ++  +K+  G    +FG    E            +K T+ +I  + R    
Sbjct: 476 PAEDASACMELLRLKLKNG---PSFGINEEETESMALRLTRSGKKSTIIDIPTIARQHSI 532

Query: 212 ----LFTRITKEELDEHDKTIQTLGKNA--IWDRY 240
               +    + +E+      I+ +   +  +W  +
Sbjct: 533 GDTNIVPCPSDDEILAAA--IKAVDGPSSFVWSHF 565


>gi|291559233|emb|CBL38033.1| Predicted 3'-5' exonuclease related to the exonuclease domain of
           PolB [butyrate-producing bacterium SSC/2]
          Length = 310

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 50/153 (32%), Gaps = 31/153 (20%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N  + + FDIETTGL +    I  IG  ++                           
Sbjct: 1   MEHNIQQSLFFDIETTGLSADISAITVIGCCDMDGNV----------------------- 37

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDP 120
               T  F +D  S   I ++F  F    N     +   FD+ F+ ++++    +   D 
Sbjct: 38  ----TQWFNEDGLSQKQILTDFLAFIQPYNTLITFNGKTFDLPFLTSKIKEFKINASFDQ 93

Query: 121 SRIIDT---LSIARRKHPSSRNDLNSLCKRYGI 150
              +D    L   +           +L +  GI
Sbjct: 94  YEHLDLYQILKPYKNLWGLKNFRQKNLEEYLGI 126


>gi|322781953|gb|EFZ10309.1| hypothetical protein SINV_07054 [Solenopsis invicta]
          Length = 640

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 74/205 (36%), Gaps = 26/205 (12%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N +  ++ D+ET+G +   D I++I A    +      +F +++ P  +  S  A + + 
Sbjct: 367 NDIAIVLLDLETSGFEMNCD-ILQIAAKYGKN------SFDIYVNP-VQDISVSASQAND 418

Query: 65  ITD---EFLKDK-----PSFSSIFSEFWDFFNEQN--AEWIAHNAKFD-VGFINAELQRI 113
           +T    E + +          +       +            HN  FD   F+   ++  
Sbjct: 419 LTSCYGELMYNGRQVPSVPIRAALGSLHGWLTSLGKKCCIATHNLSFDGPRFMKQVIKCS 478

Query: 114 NKDPLDP--SRIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
            ++         +DTL + R    +       ++ L     I+      H A  D  +LS
Sbjct: 479 LENEFSEVVYSFVDTLQVIRNSTGRKGKGACSISGLANALNISTVG--AHNASRDCVILS 536

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFF 193
            +  K+ +   Q+    KT  +  F
Sbjct: 537 KILNKLKITTQQLLTNSKTFSEHTF 561


>gi|167766365|ref|ZP_02438418.1| hypothetical protein CLOSS21_00869 [Clostridium sp. SS2/1]
 gi|317496793|ref|ZP_07955123.1| hypothetical protein HMPREF0996_00102 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167711956|gb|EDS22535.1| hypothetical protein CLOSS21_00869 [Clostridium sp. SS2/1]
 gi|316895805|gb|EFV17957.1| hypothetical protein HMPREF0996_00102 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 310

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 50/153 (32%), Gaps = 31/153 (20%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N  + + FDIETTGL +    I  IG  ++                           
Sbjct: 1   MEHNIQQSLFFDIETTGLSADISAITVIGCCDMDGNV----------------------- 37

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDP 120
               T  F +D  S   I ++F  F    N     +   FD+ F+ ++++    +   D 
Sbjct: 38  ----TQWFNEDGLSQKQILTDFLAFIQPYNTLITFNGKTFDLPFLTSKIKEFKINASFDQ 93

Query: 121 SRIIDT---LSIARRKHPSSRNDLNSLCKRYGI 150
              +D    L   +           +L +  GI
Sbjct: 94  YEHLDLYQILKPYKNLWGLKNFRQKNLEEYLGI 126


>gi|166364552|ref|YP_001656825.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
 gi|166086925|dbj|BAG01633.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
          Length = 956

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 29/145 (20%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + +D ETT L+ +  +++ IG     + +        ++ P G ++             
Sbjct: 367 PVAWDTETTDLNPRVAKLVGIGCCWGKELNAM-----AYI-PIGHQS------------- 407

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              D  +   +  +        +   +  NAKFD+     +   +           DT+ 
Sbjct: 408 --GDNLNLEIVLEKLRPILASDDYPKVFQNAKFDIDVFYHQGITVKGLVF------DTMV 459

Query: 129 IARRKHPSSRNDLNSLCKRY--GIT 151
            +   HP   ++L  LC RY  GIT
Sbjct: 460 ASYVLHPELTHNLEDLCDRYLTGIT 484


>gi|323303994|gb|EGA57774.1| Rex2p [Saccharomyces cerevisiae FostersB]
          Length = 186

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 19/121 (15%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLC--PNGR-KNSPEAL 60
            D E TGLD  NDRIIEI  +    +         + +  ++  +   P    K +   +
Sbjct: 58  IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCI 117

Query: 61  KLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQR 112
           + H   G+T + L  + + + +  E  ++      ++       ++   D  F+  E  +
Sbjct: 118 EHHGNSGLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRLFMVREFPK 177

Query: 113 I 113
           +
Sbjct: 178 V 178


>gi|145579953|pdb|2O4I|A Chain A, Structure Of Trex1 In Complex With Dna
 gi|145579954|pdb|2O4I|B Chain B, Structure Of Trex1 In Complex With Dna
          Length = 247

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 35/178 (19%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIG--AVELLDYSKT----------------NRTFQV 46
           +    I  D+E TGL S    + E+   AV       T                     +
Sbjct: 12  HMQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSL 71

Query: 47  FLCPNGRKNSPEALKLHGITDE--FLKDKPSFSS-IFSEFWDFFNE--QNAEWIAHN-AK 100
            + P G+  SP A ++ G++     ++ +  F   +      F     Q    +AHN  +
Sbjct: 72  CIAP-GKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDR 130

Query: 101 FDVGFINAELQRINKD-PLDPSRIIDTLSIARRKHP---------SSRNDLNSLCKRY 148
           +D   +  EL R++   PLD +  +D+++  +                  L S+  R 
Sbjct: 131 YDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRL 188


>gi|55959493|emb|CAI12493.1| prion protein interacting protein [Homo sapiens]
 gi|56203067|emb|CAI23195.1| prion protein interacting protein [Homo sapiens]
          Length = 176

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 25  RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSE 82
            IIE   ++L     +   TF +++ P      +P   +L GI    +  +PS   +   
Sbjct: 46  EIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLER 105

Query: 83  FWDFFNEQN 91
             ++  ++ 
Sbjct: 106 VDEWMAKEG 114


>gi|55959490|emb|CAI12490.1| prion protein interacting protein [Homo sapiens]
 gi|56203065|emb|CAI23193.1| prion protein interacting protein [Homo sapiens]
          Length = 204

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 25 RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSE 82
           IIE   ++L     +   TF +++ P      +P   +L GI    +  +PS   +   
Sbjct: 3  EIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLER 62

Query: 83 FWDFFNEQN 91
            ++  ++ 
Sbjct: 63 VDEWMAKEG 71


>gi|1019712|gb|AAA98633.1| YNT20 [Saccharomyces cerevisiae]
          Length = 248

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 30/172 (17%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLC--PNGR-KNSPEAL 60
            D E TGLD  NDRIIEI  +    +         + +  ++  +   P    K +   +
Sbjct: 58  IDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYETVIHYGPEVMNKMNEWCI 117

Query: 61  KLHGITDEF---LKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQR 112
           + HG ++     L  + + + +  E  ++      ++       ++   D  F+  E  +
Sbjct: 118 EHHGNSESHPKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRLFMVREFPK 177

Query: 113 INKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +          + + + +ARR +P+ +                 + H A  D
Sbjct: 178 VIDHLFYRIVDVSSIMEVARRHNPALQAR----------NPKKEAAHTAYSD 219


>gi|289616861|emb|CBI56427.1| unnamed protein product [Sordaria macrospora]
          Length = 416

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 19/174 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G       +  + A   L     N+ +  ++ P           + GI+ 
Sbjct: 223 KYVAIDCEMVGTGPSG--LTSVLARCSLVDFHGNQIYDSYVKPTAFVTDWR-THVSGISK 279

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-DT 126
           + +    SF S+ +        +    + H+ K D+  +             P R I DT
Sbjct: 280 KHMAFARSFVSVQATVAALLKGR--ILVGHDVKHDLEVL---------GLEHPHRDIRDT 328

Query: 127 LSIA--RRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              +  R+     +  L  L K    + I     H ++ D+ +   ++ K  +G
Sbjct: 329 AKYSGFRKYGHGPKPSLKVLAKEVLAVEIQSGQ-HSSVEDARVAMLLFRKEKMG 381


>gi|300814058|ref|ZP_07094341.1| hypothetical protein HMPREF9131_1233 [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511715|gb|EFK38932.1| hypothetical protein HMPREF9131_1233 [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 299

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 31/139 (22%)

Query: 14  IETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDK 73
           IETTGL  KND II IG ++       N T   F+                   E LK++
Sbjct: 19  IETTGLSIKNDVIIAIGIIK-------NNTIYQFII------------------EDLKEE 53

Query: 74  PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-LSIARR 132
                + ++       +  E IA+N  F+  F+  +            + +   +   + 
Sbjct: 54  I---ELINKANKIIRNE--EIIAYNGTFEKNFLTYKADTYKIPTDFNIKKLSQKIKNFKY 108

Query: 133 KHPSSRNDLNSLCKRYGIT 151
             P      N+L + + I 
Sbjct: 109 LFPLENYSKNNLEEFFKIE 127


>gi|25028926|ref|NP_738980.1| oligoribonuclease [Corynebacterium efficiens YS-314]
 gi|259507990|ref|ZP_05750890.1| oligoribonuclease [Corynebacterium efficiens YS-314]
 gi|29611789|sp|Q8FMX9|ORN_COREF RecName: Full=Oligoribonuclease
 gi|23494213|dbj|BAC19180.1| putative oligoribonuclease [Corynebacterium efficiens YS-314]
 gi|259164485|gb|EEW49039.1| oligoribonuclease [Corynebacterium efficiens YS-314]
          Length = 221

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 27/175 (15%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCP---NGRKNSPEA 59
               R +  D+E TGLD +   I+E+ A V   + +       + +        +     
Sbjct: 16  ARDDRLVWVDLEMTGLDLERHVIVEVAALVTDANLNILGEGVDLVVHATDEELARMDDFV 75

Query: 60  LKLH---GITD----EFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQ 111
            ++H   G+T       +  K +  ++ +   +  +    A    ++   D  FI  ++ 
Sbjct: 76  TRMHDSSGLTPLIRASTVSLKDAEDAVLALIEEHCDPAHPAPLAGNSIATDRAFIREQMP 135

Query: 112 RINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           R+  D     R++D  S+   ARR  P                 +    H AL D
Sbjct: 136 RL--DAALHYRMVDVSSVKELARRWCPRVYYK----------QPTKGLAHRALAD 178


>gi|115740337|ref|XP_001186993.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115908757|ref|XP_001187567.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 407

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 74/188 (39%), Gaps = 16/188 (8%)

Query: 10  IVFDIETTG--LDSKN--DRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
            V D+E T   ++  +    IIE   V       +   TF  F  P      S    +L 
Sbjct: 215 CVIDVEATCQEINPVDYIHEIIEFPIVLLNTKTLQIEDTFDAFCKPVINPQLSKFCSQLT 274

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINKDPL 118
            I+ + +     F ++  +   +  ++      +  IA +   D+  +  +LQ +  +  
Sbjct: 275 NISQKMVDKADEFPTVLEKAERWMRQKGLGSKHSFAIATDCSLDMD-LYLKLQCLVSEIS 333

Query: 119 DPSRIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            P    + ++I++     + + R  L ++    G+       H  + D+  ++ V ++++
Sbjct: 334 YPQYAKEWVNISKVFANLYKTKRLPLRAMLDSTGLAFIG-QPHRGIDDARNIARVALQLI 392

Query: 176 VGGSQINF 183
             G+++ +
Sbjct: 393 EDGAEMKY 400


>gi|307324588|ref|ZP_07603795.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
 gi|306889832|gb|EFN20811.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
          Length = 202

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 28/171 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEALK-LH 63
           R +  D E TGL   ND +IE+ A V   + +       + + P        PE ++ +H
Sbjct: 4   RMVWIDCEMTGLSLANDALIEVAALVTDSELNIQGEGVDIVVRPPAEALVTMPEVVRDMH 63

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINK 115
              G+  E L+   +      +   +  +       A    ++   D GF+  ++  +  
Sbjct: 64  TTSGLLAE-LEGGTTLEDAQDQVLAYIRKHVPEAGKAPLCGNSVGTDRGFLLRDMPTL-- 120

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +     RI+D  SI   ARR +P            +     + + H AL D
Sbjct: 121 ESYLHYRIVDVSSIKELARRWYPR---------AYFNSPKKNGN-HRALAD 161


>gi|302922329|ref|XP_003053443.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734384|gb|EEU47730.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 720

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 59/172 (34%), Gaps = 28/172 (16%)

Query: 8   RKI-VFDIET--TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           R++   D E   TG +  +  +  I  +        +      + P+ +       +  G
Sbjct: 333 REVLALDCEMCMTGENEFS--LTRISIINWTGDVVLDE----LVKPD-KPIVDYVTQFSG 385

Query: 65  ITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           IT+E L   P   +   I  +  +  + +    + H+ + D   +             P 
Sbjct: 386 ITEEML--APVTTTLRDIQEKLLEILHPR-TILVGHSLESDTKALQIS---------HPF 433

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDV 170
            +  ++     + P  ++ L  L ++Y    I     + H ++ D+    D+
Sbjct: 434 IVDTSIIFPHPRGPPLKSSLKWLAQKYLSKEIQKGGANGHDSIEDAKTCLDL 485


>gi|206561254|ref|YP_002232019.1| oligoribonuclease [Burkholderia cenocepacia J2315]
 gi|198037296|emb|CAR53218.1| oligoribonuclease [Burkholderia cenocepacia J2315]
          Length = 206

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 58/171 (33%), Gaps = 21/171 (12%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVE---LLDYSKTNRTFQVFLCPNG-RKNSPEA 59
           +N++  +  D+E TGLD  NDRIIEI  V     LD +     F +        K     
Sbjct: 15  RNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWN 74

Query: 60  LKLHG----ITD---EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
              HG    I       + +  + + + +    + +   +    ++   D  F+   +  
Sbjct: 75  KSTHGRSGLIDRVRASTVTEADAAAQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPE 134

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +     +  + TL    R+   +                 R+ H AL D
Sbjct: 135 FERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 175


>gi|115351008|ref|YP_772847.1| oligoribonuclease [Burkholderia ambifaria AMMD]
 gi|172060013|ref|YP_001807665.1| oligoribonuclease [Burkholderia ambifaria MC40-6]
 gi|122323700|sp|Q0BH60|ORN_BURCM RecName: Full=Oligoribonuclease
 gi|115280996|gb|ABI86513.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria
           AMMD]
 gi|171992530|gb|ACB63449.1| Exonuclease RNase T and DNA polymerase III [Burkholderia ambifaria
           MC40-6]
          Length = 206

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 58/171 (33%), Gaps = 21/171 (12%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVE---LLDYSKTNRTFQVFLCPNG-RKNSPEA 59
           +N++  +  D+E TGLD  NDRIIEI  V     LD +     F +        K     
Sbjct: 15  RNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWN 74

Query: 60  LKLHG----ITD---EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
              HG    I       + +  + + + +    + +   +    ++   D  F+   +  
Sbjct: 75  KSTHGRSGLIDRVRASTVTEADAAAQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPE 134

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +     +  + TL    R+   +                 R+ H AL D
Sbjct: 135 FERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 175


>gi|300704711|ref|YP_003746314.1| oligoribonuclease [Ralstonia solanacearum CFBP2957]
 gi|299072375|emb|CBJ43713.1| oligoribonuclease [Ralstonia solanacearum CFBP2957]
          Length = 219

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 29/175 (16%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+    +  D+E TGL  +NDRIIE+  V             V +     +        +
Sbjct: 25  KSDNNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQPDEILDGMDAWN 84

Query: 64  -------GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAELQR 112
                  G+ D+      + +   ++  DF      +  +    ++   D  F+   + +
Sbjct: 85  KGTHGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPK 144

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           +  +     R +D             + L  LCKR+   I+     R +H A  D
Sbjct: 145 L--EAYFHYRNLDV------------STLKELCKRWQPAIAKGFIKRQQHTAYAD 185


>gi|167586566|ref|ZP_02378954.1| oligoribonuclease [Burkholderia ubonensis Bu]
          Length = 206

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 33/177 (18%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEAL-- 60
           +N++  +  D+E TGLD  NDRIIEI  V       TN T ++ +  P    +  +A   
Sbjct: 15  RNELNLVWLDMEMTGLDPDNDRIIEIAVV------VTNSTLEIAVEGPVFAIHQSDATLA 68

Query: 61  -------KLHG----ITD---EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
                    HG    I       + +  + + + +    + +   +    ++   D  F+
Sbjct: 69  KMDDWNKNTHGRSGLIDRVRASTVTEADAAAQLQAFLAQYVSPGKSPMCGNSICQDRRFM 128

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              +  + +     +  + TL    R+   +                 R+ H AL D
Sbjct: 129 ARWMPDLERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 175


>gi|321272267|gb|ADW80152.1| leucine-rich repeat family protein [Wolbachia endosymbiont wVitA of
           Nasonia vitripennis phage WOVitA1]
 gi|321272324|gb|ADW80206.1| leucine-rich repeat family protein [Wolbachia endosymbiont wVitB of
           Nasonia vitripennis phage WOVitB]
          Length = 258

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 4   KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSK 39
            +K R+IV D ETTGL  K   RIIEIG VE     +
Sbjct: 205 LSKQREIVLDTETTGLSVKFGHRIIEIGCVEPYSNRQ 241


>gi|156032904|ref|XP_001585289.1| hypothetical protein SS1G_13858 [Sclerotinia sclerotiorum 1980]
 gi|154699260|gb|EDN98998.1| hypothetical protein SS1G_13858 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 332

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 15/168 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D E  G+    DR + +  V ++++  T + +  F+ P           + G++ 
Sbjct: 145 KYIGIDCEMVGVGGAEDRSV-LARVSIVNFHGT-QVYDSFVRPQEFVTDWR-THVSGVST 201

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +     F  +  +  +    +    I H  K D+  +     + +             
Sbjct: 202 KNMATAREFDEVQKDVAEILKGR--ILIGHAIKNDLEAMILSHPKRDIRDTSKFSGF--- 256

Query: 128 SIARRKHPSSRN-DLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIK 173
               RK+ + R   L  L K   G+ I     H ++ D+     ++ K
Sbjct: 257 ----RKYSNGRTPSLKKLSKEILGVDIQGGE-HSSIEDARATILLFRK 299


>gi|152983378|ref|YP_001354728.1| hypothetical protein mma_3038 [Janthinobacterium sp. Marseille]
 gi|151283455|gb|ABR91865.1| Hypothetical protein mma_3038 [Janthinobacterium sp. Marseille]
          Length = 172

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 68/184 (36%), Gaps = 32/184 (17%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS------------KTNRTFQVFLCPNGRKNSP 57
           I  D E TGLD +   +I IG V+                 + N      + P+      
Sbjct: 3   IFLDTEFTGLDQRKPDLISIGLVDETGQEFYAELPEVHWTVQCNEWVHFNVLPH------ 56

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
               LHG +D++++++   S     + +  +++ A  +      D  F   +L+R+ +  
Sbjct: 57  ----LHG-SDDYVQNEALISESLVAWIENISDK-AIIV--TDCIDADF--TQLKRLLQKW 106

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +   +      A       +  L +L    YG     R +H AL D+H L    +  + 
Sbjct: 107 PNNLDVRPIQFTAWSMGEDKQPTLQTLMNNYYG---PGRPRHHALHDAHALRLAALYAVK 163

Query: 177 GGSQ 180
            G Q
Sbjct: 164 NGWQ 167


>gi|119961384|ref|YP_948135.1| oligoribonuclease [Arthrobacter aurescens TC1]
 gi|119948243|gb|ABM07154.1| putative oligoribonuclease [Arthrobacter aurescens TC1]
          Length = 211

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 64/175 (36%), Gaps = 23/175 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSP-- 57
           M   N+ R +  D E TGLD  ND +IE+ A V   + +       V + P+        
Sbjct: 1   MPITNE-RIVWIDCEMTGLDLTNDALIEVAALVTDSELNILGDGVDVVIKPDDAALEQMN 59

Query: 58  -EALKLHGITD--EFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAE 109
                +H  +   + L    + +   ++  ++      + + A    ++   D  F+  +
Sbjct: 60  DFVRDMHTRSKLLDELPHGKTMAEAEAQVLEYIEKWVPDPRKAPLGGNSVGTDRMFLARD 119

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  I +        + T+  ++RR  P          + Y  + +    H AL D
Sbjct: 120 MPNIVEHLHYRVIDVSTIKELSRRWFP----------RAYFQSPAKHGGHRALGD 164


>gi|116515288|ref|YP_802917.1| oligoribonuclease [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116257142|gb|ABJ90824.1| oligoribonuclease [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 181

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 12/145 (8%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV---ELLDYSKTNRTFQVFLCPNG-RKNS 56
           M +KN+   I  D+ETTGL+ K  +IIEI  +   + L+  +      +F      RK  
Sbjct: 1   MNQKNE-NLIWVDLETTGLNPKIHKIIEISTIITDKNLNILEIGPNIIIFQKKEFLRKIC 59

Query: 57  PEALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
               ++H        I +    +K +          +  +  +    +    D  F+   
Sbjct: 60  HNFFQIHKKNGLMKEIKNSKEDEKSAEKKTLKFLKKWIPKNISPICGNTISLDRNFLLYH 119

Query: 110 LQRINKDPLDPSRIIDTLSIARRKH 134
           + ++       +  + +++   ++ 
Sbjct: 120 MPKLKSYFYYRNIDVSSINELIKRW 144


>gi|322805638|emb|CBZ03203.1| ATP-dependent DNA helicase UvrD/PcrA,clostridial paralog
           [Clostridium botulinum H04402 065]
          Length = 549

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 26/45 (57%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF 47
             +    +VFD+E+TG++   D I++I  +++ +  +   +FQ F
Sbjct: 489 ELDNENVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRF 533


>gi|260768515|ref|ZP_05877449.1| hypothetical protein VFA_001567 [Vibrio furnissii CIP 102972]
 gi|260616545|gb|EEX41730.1| hypothetical protein VFA_001567 [Vibrio furnissii CIP 102972]
 gi|315180227|gb|ADT87141.1| hypothetical protein vfu_A01985 [Vibrio furnissii NCTC 11218]
          Length = 156

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 6/154 (3%)

Query: 25  RIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL-KDKPSFSSIFSE 82
            IIE+G  E+ L   +  +  Q ++ P   + S   ++L GIT   + K     +++   
Sbjct: 6   EIIEVGLAEIDLTAGEIVKRAQYYVKPEHDEVSLFCVELTGITPRKIEKQGRPLAAVIQS 65

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSIARRKHPSSRNDL 141
               F      + +     D   +  E Q    D P      + TL   + +    R   
Sbjct: 66  MVKNFGGSQKIYAS--WGRDDQILMKECQAKGIDMPFKEFINLATLYRIQHRLKDKRIGH 123

Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            +  +  GI    R  H   +D++ L+ + + M+
Sbjct: 124 RAAQEAKGIEWEGRQ-HSGYVDAYNLAKLALTML 156


>gi|225438817|ref|XP_002278458.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 899

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 78/242 (32%), Gaps = 43/242 (17%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV----FLCPNGRKNSP 57
            R N M  +  D E          + E G   L+     +R  QV     + P+      
Sbjct: 139 TRSNAM--LAVDCEMV--------LCEDGTEGLVRVCVVDRNLQVKLNELVKPHKAVVDY 188

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDF------FNEQNAEWIAHNAKFDVGFINAELQ 111
              ++ G++         F    S   D            A  + H+   D+  +     
Sbjct: 189 R-TEITGVS------AKDFDETTSSLVDIQRSMKKLLSHGAVLVGHSLHNDLKALK---- 237

Query: 112 RINKDPLDPSRIIDTLSIARRKHP--SSRNDLNSLCKR-YGITISHRSK-HGALLDSHLL 167
                 LD +R+IDT  I + ++   + R  LN+LCK   G  +  +   H  L D+   
Sbjct: 238 ------LDHARVIDTAFIYKYENQPINRRPSLNNLCKSILGYEVRQKDAPHNCLDDASAA 291

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD-EHDK 226
             + +  +  G      F  +ED    E  K + +            RI   E   EH  
Sbjct: 292 MKLVLAKLEQGLDDAIPF-VHEDVPENEMAKLLLHRIPTDVPIEELNRIIPGEFTMEHQV 350

Query: 227 TI 228
            +
Sbjct: 351 QL 352


>gi|311743097|ref|ZP_07716905.1| oligoribonuclease [Aeromicrobium marinum DSM 15272]
 gi|311313777|gb|EFQ83686.1| oligoribonuclease [Aeromicrobium marinum DSM 15272]
          Length = 203

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 56/170 (32%), Gaps = 26/170 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG-- 64
           + +  D E TGL   +D +IEI   V   +         + + P           +    
Sbjct: 4   KLVWIDCEMTGLSLTHDALIEIAVLVTDFELEVLGPGIDLVVKPPQEALDQMNEVVTRMH 63

Query: 65  -----IT--DEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKD 116
                IT  D  L  + + + +     ++  E   A    ++   D  F+  ++  +  +
Sbjct: 64  TASGLITELDAGLTLQDAQAQVLDHVREYVKEPGKAPLAGNSVGTDRAFLARDMPEL--E 121

Query: 117 PLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                R+ID  SI   +R   P          + Y    S    H AL D
Sbjct: 122 NWLHYRVIDVSSIKELSRHWFP----------RAYFAAPSKAGHHRALTD 161


>gi|282882795|ref|ZP_06291400.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B]
 gi|281297206|gb|EFA89697.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B]
          Length = 299

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 31/139 (22%)

Query: 14  IETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDK 73
           IETTGL  KND II IG V+       N T   F+                   E LK++
Sbjct: 19  IETTGLSIKNDVIIAIGIVK-------NNTIYQFII------------------EDLKEE 53

Query: 74  PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-LSIARR 132
                + ++       +  E IA+N  F+  F+               + +   +   + 
Sbjct: 54  I---ELINKANKIIRNE--EIIAYNGTFEKNFLTYRADIYKISTDFNIKKLSQKIKNFKY 108

Query: 133 KHPSSRNDLNSLCKRYGIT 151
             P      N+L + + I 
Sbjct: 109 LFPLENYSKNNLEEFFKIE 127


>gi|302525599|ref|ZP_07277941.1| exonuclease superfamily protein [Streptomyces sp. AA4]
 gi|302434494|gb|EFL06310.1| exonuclease superfamily protein [Streptomyces sp. AA4]
          Length = 193

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 21/167 (12%)

Query: 11  VFDIETTGLDSKN-----DRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           V D+E T  +++        IIEIG   V+L    +  +  ++ + P   + SP   +L 
Sbjct: 16  VVDVEATCWENQPPPGQVSEIIEIGLTVVDLRAGERVAKH-RILVRPARSEVSPFCTELT 74

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSR 122
           G+T   +    SF             +  E   A    +D      + +    +      
Sbjct: 75  GLTQSEVDGGLSFREACRTLA--VRHRTTELPWASWGDYDRNQFTRQCRHTGTEYPFTGL 132

Query: 123 IID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
             +     T +   R+ P             G+ +  R  H    D+
Sbjct: 133 HTNAKVAFTAAYGLRRRPGM----AQALAVAGLPLEGR-HHRGDDDA 174


>gi|50547147|ref|XP_501043.1| YALI0B18128p [Yarrowia lipolytica]
 gi|74689770|sp|Q6CE69|REXO4_YARLI RecName: Full=RNA exonuclease 4
 gi|49646909|emb|CAG83296.1| YALI0B18128p [Yarrowia lipolytica]
          Length = 291

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 15/166 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIE--IGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + I  D E  G+     R I   +  V    +   +     ++ P  R        + G+
Sbjct: 132 KFIALDCEFVGVGPNGARSILARVSIVNYYGHVLMDE----YVKPIERVTDWR-TWVSGV 186

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T   + +  SFS          N +    I H    D+  +  +  R +       +   
Sbjct: 187 TPAMVANGISFSEAQERVKRLLNGR--TLIGHALINDLAVLGLDHPRADIRDTQKPQYFK 244

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           T+   +   PS ++ +   C    I    + +H +++D+     ++
Sbjct: 245 TVCGCKT--PSLKHVMKE-CVDLNI---QQGEHSSVIDAQAAMLLF 284


>gi|312795486|ref|YP_004028408.1| Oligoribonuclease [Burkholderia rhizoxinica HKI 454]
 gi|312167261|emb|CBW74264.1| Oligoribonuclease (EC 3.1.-.-) [Burkholderia rhizoxinica HKI 454]
          Length = 204

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 33/177 (18%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEAL-- 60
           K++   I  D+E TGL    DRIIE+  V       T+    V +  P    +  ++   
Sbjct: 16  KSEFNLIWLDMEMTGLLPNTDRIIEVAVV------VTDSNLTVVVEGPVLAIHQSDSTLD 69

Query: 61  -------KLHGITD--EFLKD-KPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFI 106
                    HG +   E ++    + +   ++   F ++      +    ++   D  F+
Sbjct: 70  AMDQWNKNTHGRSGLIERVRASSVTEADAAAQLLAFLSQYVPAGKSPMCGNSICQDRRFM 129

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              +  +       +  + TL    R+   +                 R+ H AL D
Sbjct: 130 ARWMPELEAFFHYRNLDVSTLKELCRRWQPAVYK----------GFQKRALHTALAD 176


>gi|308505906|ref|XP_003115136.1| hypothetical protein CRE_28512 [Caenorhabditis remanei]
 gi|308259318|gb|EFP03271.1| hypothetical protein CRE_28512 [Caenorhabditis remanei]
          Length = 296

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 28/170 (16%)

Query: 12  FDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            D+E      GL++       I  V+       +     F+ P GR       +  GI  
Sbjct: 146 LDVEMVHTENGLEAGR-----ISLVDCQGRILIDE----FIKPEGR-IVHLNTQFSGIEM 195

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L D  S   I    + F N Q++  + H    D   +    Q ++   +D   I+ T 
Sbjct: 196 NHLDDAKSLKQIHKLMFQFIN-QSSIIVGHGLSNDFKAL----QLVHLKVIDTGLIVTT- 249

Query: 128 SIARRKHPSSRNDLNSLCKR-YGITISHR-SKHGALLDSHLLSDVYIKMM 175
                        L  L K+   + I  R   H ++ D+     +  K++
Sbjct: 250 ------ENGKMMSLKRLAKKLLDVDIQERVGGHDSIEDAMTCLKIAEKLV 293


>gi|118387765|ref|XP_001026985.1| exonuclease family protein [Tetrahymena thermophila]
 gi|89308755|gb|EAS06743.1| exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 251

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 57/186 (30%), Gaps = 20/186 (10%)

Query: 10  IVFDIETTGLDSKN---DRIIE--IGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
           ++ D E T  + +      IIE  I  ++L         F  ++ P      +    +L 
Sbjct: 22  LILDFEATCSNDEKLNVQEIIEFPIVILDLKKNVILPEYFHTYVKPTYHPILTKFCTELT 81

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPS 121
            IT E + +     S   +  +F N+        A     D               ++  
Sbjct: 82  HITQEQVDNGVILESAIQQADEFLNKMGIIDKKFAFVCCGDFDLGQCLRLEAKFKKINYP 141

Query: 122 RIIDTLSIARRKHPSSRNDLN-----------SLCKRYGITISHRSKHGALLDSHLLSDV 170
           +        +++ P      +           ++ K   + +   + H  L DS  ++ +
Sbjct: 142 QYFKQYINIKKQFPKEWYTESIIKWNKPPGMVAMLKAINLEL-QGTHHSGLDDSKNIARI 200

Query: 171 YIKMMV 176
              M+ 
Sbjct: 201 AQFMVE 206


>gi|118400656|ref|XP_001032650.1| exonuclease family protein [Tetrahymena thermophila]
 gi|89286993|gb|EAR84987.1| exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 215

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 72/208 (34%), Gaps = 28/208 (13%)

Query: 1   MIRKNKMR-----KIVFDIETTG---LDSKNDRIIEIGAV--ELLDYSKTNRTFQVFLCP 50
           M +KN++       ++ D E T    +  +   IIE   V  ++ +    +  F  ++ P
Sbjct: 1   MDQKNQINNDFDYLLILDFEATCEKNVKLECQEIIEFPVVVLDVKNQQILDVFFHHYIKP 60

Query: 51  NGRK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF----DVGF 105
           +     +    +L GI  E + +  S     ++   F  +   + I  +  F    D   
Sbjct: 61  SVNPKLTAFCTELTGIKQEQVDNGISLQEALAQLTLFLEQN--KLIGSSFTFITCGDFDL 118

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHP---------SSRNDLNSLCKRY-GITIS-H 154
            N   +      ++  + +      ++  P            N L  +     G+ +   
Sbjct: 119 GNCLRREALYKKIEIPQYLKNYINIKKVFPKQYYPKQKKEGDNRLPDMVGMLQGLNLKLD 178

Query: 155 RSKHGALLDSHLLSDVYIKMMVGGSQIN 182
              H  + DS  ++ + + ++  G + N
Sbjct: 179 GHHHSGIDDSKNIAKIALTLLQKGFKFN 206


>gi|117928856|ref|YP_873407.1| oligoribonuclease [Acidothermus cellulolyticus 11B]
 gi|117649319|gb|ABK53421.1| Exonuclease, RNase T and DNA polymerase III [Acidothermus
           cellulolyticus 11B]
          Length = 269

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 26/166 (15%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG---RKNSPEALKLH---G 64
            D E TGLD ++D +IE+   +   + +  +    V + P             ++H   G
Sbjct: 8   IDCEMTGLDLRSDALIEVAMLITDAELNVISDGIDVVIKPPDEALASMPDVVRQMHTASG 67

Query: 65  ITDEF---LKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDP 120
           + DE    +    +   +     ++  E   A    +    D  F+  ++  +  D    
Sbjct: 68  LLDELPHGVSLAEAEERLLGVLREYVPEAGKAPLCGNTIATDRAFLARDMPAV--DAYLH 125

Query: 121 SRIIDTLSIA---RRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R+ID  SI    RR +P          + Y  +   +S H AL D
Sbjct: 126 YRMIDVSSIKELVRRWYP----------RVYFASPEKKSAHRALAD 161


>gi|300741385|ref|ZP_07071406.1| oligoribonuclease [Rothia dentocariosa M567]
 gi|300380570|gb|EFJ77132.1| oligoribonuclease [Rothia dentocariosa M567]
          Length = 211

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 30/174 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALK----- 61
           R +  D E TGLD   D +IEIG  V   D +      ++ + P G +    AL+     
Sbjct: 7   RIVWIDCEMTGLDLTQDALIEIGVLVTDSDLNILGEGVELVIKP-GSEAPAGALENMNSY 65

Query: 62  ---LH---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAEL 110
              +H   G+  E L+   S          +          A+   ++   D  F+  ++
Sbjct: 66  VRNMHESSGLL-EDLEHGVSMHEAQEAVLKYVKKYVPVAGKAQLGGNSVGMDKRFLERDM 124

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             + K        + T+  +A R +P++R++                 H AL D
Sbjct: 125 PDLMKHLHYRVIDVSTIKELAARWYPAARHN----------APVKTGNHRALGD 168


>gi|78047756|ref|YP_363931.1| oligoribonuclease [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325928670|ref|ZP_08189846.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas perforans
           91-118]
 gi|123585062|sp|Q3BTI2|ORN_XANC5 RecName: Full=Oligoribonuclease
 gi|78036186|emb|CAJ23877.1| oligoribonuclease [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325540966|gb|EGD12532.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas perforans
           91-118]
          Length = 194

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 60/174 (34%), Gaps = 31/174 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYS---------------KTNRTFQVFLCPNG 52
           R I  D+E TGLD+  D IIEI  +                     +T      +   N 
Sbjct: 10  RLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLETLEAMDEW-NRNQ 68

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            + S    ++    D  +    + +   +   ++     +    ++   D  F++ ++ R
Sbjct: 69  HRRSGLWQRV---LDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMSR 125

Query: 113 INKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           + +     +  + T+  +ARR  PS  N             +  S H AL D  
Sbjct: 126 LERYFHYRNLDVSTIKELARRWAPSVANG-----------FAKSSAHTALSDVR 168


>gi|71662500|ref|XP_818256.1| phosphotransferase [Trypanosoma cruzi strain CL Brener]
 gi|70883496|gb|EAN96405.1| phosphotransferase, putative [Trypanosoma cruzi]
          Length = 539

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 71/238 (29%), Gaps = 36/238 (15%)

Query: 9   KIVFDIETTGLDSKN---DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D E T   ++      IIE   V +   S +    FQ ++ P      S    +L 
Sbjct: 59  YVVLDFEATCERNRRLEEPEIIEFPMVLIDARSHRILTEFQRYVRPVVNPILSDFCTELT 118

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQN--------AEWIAHNAKFDVG-FINAELQRIN 114
           GI    +    +F  +F    +F             +        +D+   + ++L+   
Sbjct: 119 GIKQSVVDAAETFPLVFDAALEFLRGSGYGEAPPLRSYLFVTCGDWDLKTMLPSQLRTTE 178

Query: 115 KD------PLDPSRIIDTLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSH 165
           K       P    R  +     R   P+      DL  +    G+ +  R  H  + D  
Sbjct: 179 KTGTAIVAPSTFRRWCNLKVPMRTIVPTKARGIFDLREMLAAVGLPLKGR-HHSGIDDCR 237

Query: 166 LLSDVYIKMMVGG------------SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
            ++ V  +++  G             Q        EDR     +            +P
Sbjct: 238 NIASVVQELLRRGHVIAPTTDHSGIRQRESSLSRAEDRPLTGLRGGTRVPKKHAEKRP 295


>gi|270158079|ref|ZP_06186736.1| oligoribonuclease [Legionella longbeachae D-4968]
 gi|289163655|ref|YP_003453793.1| oligoribonuclease [Legionella longbeachae NSW150]
 gi|269990104|gb|EEZ96358.1| oligoribonuclease [Legionella longbeachae D-4968]
 gi|288856828|emb|CBJ10639.1| oligoribonuclease [Legionella longbeachae NSW150]
          Length = 185

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 60/175 (34%), Gaps = 27/175 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT------FQVFLCPNGRKNS 56
            KN    I  D+E TGL+ + DRIIE+  V    +             Q  +  +G    
Sbjct: 1   MKNNQNLIWIDLEMTGLNPEQDRIIELATVVTDPHLNIIAEGPVFAISQSKVLLDG--MD 58

Query: 57  PEALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
               K HG       + +  + +  +          + ++  +    ++   D  F+   
Sbjct: 59  SWNTKQHGQSGLVKRVLESDVNEAQAEKRTIEFLKQYLDKGKSPMCGNSICQDRRFLYKY 118

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  +       +  + TL  +A R  P     LN + K         SKH AL D
Sbjct: 119 MPDLASFFHYRNLDVSTLKELAVRWRPEL---LNGVVK--------ESKHLALDD 162


>gi|46107192|ref|XP_380655.1| hypothetical protein FG00479.1 [Gibberella zeae PH-1]
          Length = 258

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 16/148 (10%)

Query: 80  FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR-KHPSSR 138
              F + F  +    + H    ++  ++     +    L+P  +IDT+  A+       R
Sbjct: 117 LGTFLNGFTRKPYVLVVHGGWQELSLLS-----LLNIKLEPVFVIDTVKAAQFPLQLWYR 171

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
           N L  L K  GI  SH   H A  D+HL   V++ + V   +I    +   D        
Sbjct: 172 NSLKELLKESGIPYSH--LHIAGNDAHLTLRVFLMIAVRDVEIQLEGENLPD-------- 221

Query: 199 TVPNISLLKRDKPLFTRITKEELDEHDK 226
            +P +  + R       +TK E+ E ++
Sbjct: 222 WIPILKAVARSPLPPRPLTKHEITEAER 249


>gi|315655740|ref|ZP_07908638.1| oligoribonuclease [Mobiluncus curtisii ATCC 51333]
 gi|315489804|gb|EFU79431.1| oligoribonuclease [Mobiluncus curtisii ATCC 51333]
          Length = 212

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 24/176 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS--- 56
           M  K     +  D E TGLD   D +IE+  +    + +  +    + + P+    +   
Sbjct: 7   MGNKKTDPMVWIDCEMTGLDLHVDELIEVAVIVTDAELNPLDSGIDLLIKPSATAMNHMG 66

Query: 57  PEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINA 108
               ++H   G+  + L    S      +  ++          A+   ++   D  F+  
Sbjct: 67  EFVREMHTKSGLLAK-LDTGLSVEEAGRQVLEYVKRLVPEPGKAQLAGNSVHSDKAFLAK 125

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++  +          + TL  +A R +P          K YG+       H AL D
Sbjct: 126 QMPELINWLHYRIIDVSTLKELAMRWYP----------KVYGLAPEKTGNHRALGD 171


>gi|6522931|emb|CAB62118.1| hypothetical protein [Arabidopsis thaliana]
          Length = 406

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 31/174 (17%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E    +   + ++ +G V+  D       F   + PN +        + GIT E 
Sbjct: 141 VAVDCEMVLCEDGTEGLVRVGVVD-RDLKVILDEF---VKPN-KPVVDYRTDITGITAED 195

Query: 70  LKDK----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +++              F           + H+   D+  +           +D  ++ID
Sbjct: 196 IENASLSVVDIQETLQPFL----STGTILVGHSLNRDLEVLK----------IDHPKVID 241

Query: 126 TLSIARRKHPSSRN----DLNSLCKR-YGITISH-RSKHGALLDSHLLSDVYIK 173
           T  + +  +P++R      LN+LCK   G  +      H  + D+     + + 
Sbjct: 242 TALVFK--YPNTRKLRRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKLALA 293


>gi|190347963|gb|EDK40337.2| hypothetical protein PGUG_04435 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 528

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 13/101 (12%)

Query: 9   KIVFDIETTG------LDSKNDRIIEI--GAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            +V +  TT       +   +  +I I    V+     +  R  Q F+ P     +P   
Sbjct: 5   YVVVNTATTCDETNSYVTPDSTELISISWCIVDASTLQELTRN-QTFVRPTNTPITPWCT 63

Query: 61  KLHGITDEFLKDKPSFSSIFSEF----WDFFNEQNAEWIAH 97
           ++HGI+ E +++  +F     +      ++  E+   ++++
Sbjct: 64  QIHGISWEHVRNAGTFRDAIDKLEAAVKEYVGEKEFSFVSY 104


>gi|290561200|gb|ADD38002.1| Oligoribonuclease, mitochondrial [Lepeophtheirus salmonis]
          Length = 188

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 52/174 (29%), Gaps = 22/174 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN------ 55
           R N+ R +  D E TGLD + D ++E+  +    +   T     + +             
Sbjct: 5   RSNRDRIVWIDCEMTGLDLEVDVLMEVAVIITDKNLKPTKEGLNIVIHQPNSVLDAMTGF 64

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAK-FDVGFINAE 109
             E+    G+T      K       ++  +F   +         +A N+  FD  F+   
Sbjct: 65  PKESHAKTGLTAACRMSKIDVKQAENDICNFIKMECGTTFGRPLLAGNSVGFDAKFLRKY 124

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  +          + T+          +                R  H AL D
Sbjct: 125 MPSVTDILHYRIIDVSTIHECYNLWDREK---------LKFCPKKRKTHRALDD 169


>gi|126307849|ref|XP_001375050.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 237

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 60/181 (33%), Gaps = 15/181 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   K      +    ++ YS  +  +  ++ P  +       K  GI  
Sbjct: 61  KMVALDCEMVGTGPKGHT-SSLARCSIVSYSG-DILYDEYIRPPCKIVDYR-TKWSGIKK 117

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E + +   F     E       +    + H    D   ++    +    PL        +
Sbjct: 118 EHMINATPFKVARREILKILLGK--IVVGHAIHNDFKALHYFHPK----PLTRDTSRIPI 171

Query: 128 SIARRKHPSSRN-DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             +R   P + +  L  L K+     I +  +S H ++ D+    D+Y K++    +   
Sbjct: 172 LNSRAGFPENESISLKRLTKQLLQQDIQV-GKSGHSSVEDAKATMDLY-KLVEVEWEQQL 229

Query: 184 G 184
            
Sbjct: 230 A 230


>gi|328768674|gb|EGF78720.1| hypothetical protein BATDEDRAFT_32150 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 265

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 9   KIVFDIETT-----GLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRK-NSPEAL 60
            +V DIE T     G D  +  +IE   +  +D    +T  TF+ +  P      +    
Sbjct: 81  YLVCDIEATCDSDSGFDFAS-EVIEFPVI-AIDGTTMETVSTFRRYCRPILHPTLTDFCK 138

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFF-----------NEQNAEWIAHNAKFDVG-FINA 108
           +  GIT E       F+ +F++F ++               +      +  +D+  F+  
Sbjct: 139 QFTGITQEQTDAADPFTVVFADFLEWMLSLYPSTDGVSALTDEVIFVTDGPWDLRDFLEK 198

Query: 109 ELQRINK-DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           E    N   P    +II+  S+    +   + +L+ + K  G+    R   G   D+  +
Sbjct: 199 EFIYSNIQRPDFMRKIINIRSLYTELYGKEKTNLDGMLKGLGMVFEGREHCG-FDDASNV 257

Query: 168 SDVYIKMM 175
           + +  +M+
Sbjct: 258 ARILRRMV 265


>gi|112419022|gb|AAI22471.1| Unknown (protein for MGC:154192) [Xenopus laevis]
          Length = 369

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 22/172 (12%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G    N R  ++    ++++   +  +  ++ P     +    +  GI  
Sbjct: 194 KAVAIDCEMVGTGP-NGRNSDLARCSIVNWFG-DVMYDKYIKPKS-PVTDYRTRWSGIRR 250

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT- 126
           E L +   F     E     +      I H    D   +N         P + +R  DT 
Sbjct: 251 EHLVNATPFDVAQKEILKILS--GKVVIGHAIHNDYKALNYFH------PKEMTR--DTS 300

Query: 127 ---LSIARRKHPSSRN-DLNSLCKRY---GITISHRSKHGALLDSHLLSDVY 171
              L   R   P      L  L K+     I  + R  H ++ D+    ++Y
Sbjct: 301 KIPLLNRRAGFPEKEVASLKRLAKQLLHKDIQ-TGRQGHSSVEDAKTTMELY 351


>gi|254571599|ref|XP_002492909.1| RNA exonuclease, required for U4 snRNA maturation [Pichia pastoris
           GS115]
 gi|238032707|emb|CAY70730.1| RNA exonuclease, required for U4 snRNA maturation [Pichia pastoris
           GS115]
          Length = 213

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 60/169 (35%), Gaps = 20/169 (11%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFL---CPNGRKNSPEALK 61
           +   +  D E TGLD  ND I+EI  +    +    +  ++  +        K +   ++
Sbjct: 35  QQPIVWIDCEMTGLDIYNDHIVEICCIITDQNLEVVDEGYESVIHYDNDVMSKMNEWCIE 94

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAELQRIN 114
            H   G+T + L+   +   + SE   + ++           ++   D  F+  E  ++ 
Sbjct: 95  HHGTSGLTKKVLESTKTLPQVESELLSYISQHIEPNTGVMAGNSIHMDKFFMYREFPKVI 154

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                    + T+    ++H        +L +        ++ H A  D
Sbjct: 155 DYLFYRLIDVSTIYEVCKRHNP------ALLRTA---PRKKAAHTAKAD 194


>gi|2920819|gb|AAC04618.1| similar to C. elegans hypothetical protein; similar to AF038615
          (PID:g2736329) [Homo sapiens]
          Length = 89

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 25 RIIEIGAVELLDY-SKTNRTFQVFLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSE 82
           IIE   ++L     +   TF +++ P      +P   +L GI    +  +PS   +   
Sbjct: 1  EIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLER 60

Query: 83 FWDFFNEQN 91
            ++  ++ 
Sbjct: 61 VDEWMAKEG 69


>gi|47214696|emb|CAG01049.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 174

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 15/174 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E  G      R  E+    ++ Y  T   +  ++ P  +  +       GI    
Sbjct: 5   VALDCEMVGTGP-GGRCSELARCSIVGYHGTV-LYDKYVQP-CQPVTDYRTPWSGIQRHH 61

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L++   F+    E     +      I H+   D   ++             S ++     
Sbjct: 62  LQNATPFAQAREEILAALD--GKVVIGHSVHNDFKVLDIAHPGHMVRDTSTSPLL----- 114

Query: 130 ARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           +R    S R  L  L +R     I    R  H ++ D+    D+Y K++    +
Sbjct: 115 SRLAGLSCRRSLKVLSRRLLKRRIQ-GGRRGHNSVEDAQAALDLY-KLVEDEWE 166


>gi|158317263|ref|YP_001509771.1| oligoribonuclease [Frankia sp. EAN1pec]
 gi|158112668|gb|ABW14865.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec]
          Length = 210

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 63/171 (36%), Gaps = 27/171 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS---PEALKLH 63
           R +  D E TGLD+ +D ++E+   V   + +  +    + L           P   ++H
Sbjct: 15  RLVWIDCEMTGLDAGSDLLLEVACLVTDSELTVLDEGIDLVLAAPDAALDQMLPVVREMH 74

Query: 64  ---GITDE----FLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINK 115
              G+T+      LK   +   + S    F    + A    ++   D  FI   L ++  
Sbjct: 75  ETSGLTEAVRGSDLKLDEAEEQLLSYIRRFVPEARKAPLCGNSIATDRTFIARYLPQL-- 132

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           D     R+ID  SI   ARR +P            Y   +     H AL D
Sbjct: 133 DTFLHYRMIDVSSIKELARRWYPR---------AYYAAPVKSGG-HRALAD 173


>gi|262182551|ref|ZP_06041972.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 158

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 13/158 (8%)

Query: 34  LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE 93
            ++    + +   +    G + + +A  +H +T E +       S  ++       Q   
Sbjct: 2   PVNGGVIDLSGAGYTVVRGAQVAEDA-HVHLLTQEVIDAGEELDSAVAQLRQAL--QGRA 58

Query: 94  WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR------KHPSSRN-DLNSLCK 146
            +AH A  +VGFI A  + +         ++DT ++ RR       +P   +  L  +  
Sbjct: 59  LLAHFAALEVGFIEAASREVFGQR-PRLSVVDTFALERRHMERMGTYPRGEDLRLPRVRA 117

Query: 147 RYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           RYG+       H AL D+   +++Y+        +  G
Sbjct: 118 RYGLPRYG--SHNALSDALACAELYLAQRGRTRAVTLG 153


>gi|188026358|ref|ZP_02961799.2| hypothetical protein PROSTU_03865 [Providencia stuartii ATCC 25827]
 gi|188020096|gb|EDU58136.1| hypothetical protein PROSTU_03865 [Providencia stuartii ATCC 25827]
          Length = 181

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 35/181 (19%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEA 59
           M++KN+   I  D+E TGLD + DRIIEI  +       T+    +    P    +  +A
Sbjct: 1   MMQKNENNLIWIDLEMTGLDPERDRIIEIATI------VTDSQLNILAQGPVIAVHQTQA 54

Query: 60  L-------KLHGITDEFLKDK-------PSFSSIFS-EFWD-FFNEQNAEWIAHNAKFDV 103
                    ++  T   L ++          + + + EF + +  +  +    ++   D 
Sbjct: 55  QLDLMDEWNVNTHTASGLVERVKSSTFSEREAELATIEFLEQWVPKGASPICGNSVGQDR 114

Query: 104 GFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
            F+   +  +          + TL  +ARR  P        L        + +  H AL 
Sbjct: 115 RFLFRYMPELESYFHYRYLDVSTLKELARRWKPEI------LA-----GFTKKGTHQALD 163

Query: 163 D 163
           D
Sbjct: 164 D 164


>gi|260060686|ref|YP_003193766.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
 gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
          Length = 942

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 32/139 (23%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD ETT LD     ++ I         + ++ F     P GR+               
Sbjct: 371 VCFDTETTSLDPLEAELVGIAFSW-----EAHKGFY-LPVPEGRE--------------- 409

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                +   +  E   FF     E +  N K+D+  ++               + DT+  
Sbjct: 410 -----AAGEVLEELRPFFESDTIEKVGQNLKYDIKVLST------YGIPVRGPLFDTMLA 458

Query: 130 ARRKHPSSRNDLNSLCKRY 148
               +P  R++++ L + Y
Sbjct: 459 HYLINPDMRHNMDVLAETY 477


>gi|221117333|ref|XP_002159342.1| PREDICTED: similar to RNA exonuclease 4 [Hydra magnipapillata]
          Length = 347

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 52/171 (30%), Gaps = 15/171 (8%)

Query: 5   NKMRKIVFDIETTG--LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           N  R I  D E  G  LD K   +  +  V  L        +  F+            + 
Sbjct: 126 NITRHIALDCEMVGVGLDGKESVLARVSIVNSLGECL----YDKFVRTTESVVDYR-TEF 180

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G+  + LK+ P + ++  E  D    +    + H  + D+  +     R         +
Sbjct: 181 SGVRPQNLKNAPDYETVQKEVADIIKGR--VLVGHALQNDLKVLMLSHPRKFIRDTSKYK 238

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                        + R  L  L  +         +H ++ D+     ++ K
Sbjct: 239 FFQVA------LKTKRPALRKLAAQLLNENIQDGEHSSIEDAQAAMKLFQK 283


>gi|149927960|ref|ZP_01916210.1| oligoribonuclease [Limnobacter sp. MED105]
 gi|149823399|gb|EDM82632.1| oligoribonuclease [Limnobacter sp. MED105]
          Length = 191

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 56/167 (33%), Gaps = 29/167 (17%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----SPEALKLHGIT- 66
            D+E TGLD  ND++IE+  V             V                    HG + 
Sbjct: 3   VDMEMTGLDPFNDKVIEVAVVVTDSELNVLEEGPVLAIHQSDDILAGMDAWNTSTHGKSG 62

Query: 67  -----DEFLKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                 E + D+     +  EF   +     +    ++   D  F+   + ++  +    
Sbjct: 63  LTARVKESVIDEAQAEELLIEFLTKYIGPGKSPMCGNSICQDRRFMAKYMPKL--EAYFH 120

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
            R +D             + L  LCKR+  T +     ++KH AL D
Sbjct: 121 YRNLDV------------STLKELCKRWNPTTARKFVKKTKHTALAD 155


>gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
          Length = 897

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 41/141 (29%), Gaps = 32/141 (22%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET GLD    R++  G    +D  +    +     P+ R                
Sbjct: 329 VAVDTETDGLDPLTCRLV--GVSLAVDEGR--ACYVPLAAPDVRPLP------------- 371

Query: 70  LKDKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                  + +  E        Q    +  N KFD   +     R            DT+ 
Sbjct: 372 -------ADVVREVLTPLLASQKVSKVGQNLKFDYHVLRRWGVR------PEGPFFDTMV 418

Query: 129 IARRKHPS-SRNDLNSLCKRY 148
            A        R +L+ L ++Y
Sbjct: 419 AAWLLESDAGRYNLDRLAEKY 439


>gi|149621998|ref|XP_001521432.1| PREDICTED: similar to interferon stimulated exonuclease gene
           20kDa-like 1, partial [Ornithorhynchus anatinus]
          Length = 145

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 5/106 (4%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D E  G      R+ E+    ++ Y   +  +  ++ P          +  GIT +
Sbjct: 8   YVAIDCEMVGTGP-GGRVSELARCSVVSYHG-DVLYDKYIRPES-PIVHYRTRWSGITPK 64

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            ++    F     E       +    + H    D   +       +
Sbjct: 65  HMRGATPFQEAQKEILKLL--RGKVVVGHALHNDFRVLKYFHPHHH 108


>gi|17545661|ref|NP_519063.1| oligoribonuclease [Ralstonia solanacearum GMI1000]
 gi|21263804|sp|Q8Y0V1|ORN_RALSO RecName: Full=Oligoribonuclease
 gi|17427954|emb|CAD14644.1| probable oligoribonuclease protein [Ralstonia solanacearum GMI1000]
          Length = 219

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 29/175 (16%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+    +  D+E TGL  +NDRIIE+  V             V +     +        +
Sbjct: 25  KSDNNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQPDEILDGMDAWN 84

Query: 64  -------GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAELQR 112
                  G+ D+      + +   ++  DF      +  +    ++   D  F+   + +
Sbjct: 85  KGTHGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPK 144

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           +  +     R +D             + L  LCKR+   I+     R +H A  D
Sbjct: 145 L--EAYFHYRNLDV------------STLKELCKRWQPAIAKGFIKRQQHTAYAD 185


>gi|330860011|emb|CBX70338.1| hypothetical protein YEW_LE47370 [Yersinia enterocolitica W22703]
          Length = 120

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS-P 57
           M  KNK     + D ET G     DR  +   V   LD++       V+  P       P
Sbjct: 1   MSDKNKQPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQP 60

Query: 58  EALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD 102
           EA+ + GIT +  L +  + +    +    FN      + +N  +FD
Sbjct: 61  EAVMITGITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFD 107


>gi|331268970|ref|YP_004395462.1| hypothetical protein CbC4_0785 [Clostridium botulinum BKT015925]
 gi|329125520|gb|AEB75465.1| conserved protein [Clostridium botulinum BKT015925]
          Length = 265

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 62/172 (36%), Gaps = 36/172 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEI--GAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           I FDIETTG D +   +I I  G  +  +     + F             E+L      D
Sbjct: 26  IFFDIETTGFDKEKASVILISGGWFDENNKFIIKQYF------------AESL------D 67

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++   SF    S+F  + +            FD  FI   +   N D   P   ID  
Sbjct: 68  EEVQLLESFKKDVSKFHAWCSYNG-------RAFDEPFIKKRMDINNIDFTPPQDHIDLY 120

Query: 128 SIARRKHP---SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            + R  +      R +L S+ K  GI    +      +D  +  ++Y + + 
Sbjct: 121 RLIRPYYKQLGMERCNLKSVEKYLGIDRQDQ------IDGGMCVELYYEFLT 166


>gi|186510862|ref|NP_190579.2| SDN1 (SMALL RNA DEGRADING NUCLEASE 1); 3'-5' exonuclease/
           exonuclease [Arabidopsis thaliana]
 gi|215274638|sp|A3KPE8|SDN1_ARATH RecName: Full=Small RNA degrading nuclease 1
 gi|126352268|gb|ABO09879.1| At3g50100 [Arabidopsis thaliana]
 gi|195971097|gb|ACG60893.1| small RNA-degrading nuclease 1 [Arabidopsis thaliana]
 gi|332645105|gb|AEE78626.1| small RNA degrading nuclease 1 [Arabidopsis thaliana]
          Length = 409

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 31/174 (17%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E    +   + ++ +G V+  D       F   + PN +        + GIT E 
Sbjct: 141 VAVDCEMVLCEDGTEGLVRVGVVD-RDLKVILDEF---VKPN-KPVVDYRTDITGITAED 195

Query: 70  LKDK----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           +++              F           + H+   D+  +           +D  ++ID
Sbjct: 196 IENASLSVVDIQETLQPFL----STGTILVGHSLNRDLEVLK----------IDHPKVID 241

Query: 126 TLSIARRKHPSSRN----DLNSLCKR-YGITISH-RSKHGALLDSHLLSDVYIK 173
           T  + +  +P++R      LN+LCK   G  +      H  + D+     + + 
Sbjct: 242 TALVFK--YPNTRKLRRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKLALA 293


>gi|108757524|ref|YP_635264.1| oligoribonuclease [Myxococcus xanthus DK 1622]
 gi|108461404|gb|ABF86589.1| oligoribonuclease [Myxococcus xanthus DK 1622]
          Length = 183

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 58/181 (32%), Gaps = 32/181 (17%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGR--KNSPE 58
           +  ++ R +  D+E TGLD +   IIE+G +      +     +  +  P     +  P 
Sbjct: 1   MISSEQRFVWLDLEMTGLDPETCSIIEVGVIITGPDLRPIAEIERVIWQPEEVLLRMEPV 60

Query: 59  ALKLHGITDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
             ++H  T   L +K          +   + +   +           ++   D  F+   
Sbjct: 61  VREMH--TRNELLEKVRASNTSLRVAERDVMALVTEHCALGEGILAGNSIHTDRRFLIRY 118

Query: 110 LQRINKDPLDPSRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSK---HGALLDSH 165
           +  + +        + +L +  R  +P+               +  R     H AL D  
Sbjct: 119 MPLLERYLHYRMVDVTSLKVLTRAWYPNL--------------VEPRKAPSGHTALADVR 164

Query: 166 L 166
            
Sbjct: 165 A 165


>gi|74317857|ref|YP_315597.1| oligoribonuclease [Thiobacillus denitrificans ATCC 25259]
 gi|123611601|sp|Q3SHU1|ORN_THIDA RecName: Full=Oligoribonuclease
 gi|74057352|gb|AAZ97792.1| Exonuclease [Thiobacillus denitrificans ATCC 25259]
          Length = 182

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 23/164 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEALK--LHG--- 64
            D+E TGL  ++DRIIE+  V       T     V +   P+   ++ ++     HG   
Sbjct: 11  LDMEMTGLSPESDRIIELAIVVTDADLNTVAEGPVLVVHQPDAVMDAMDSWNRGTHGKSG 70

Query: 65  -ITD---EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            I       L +  + + +        + + +    ++   D  F+   +  +       
Sbjct: 71  LIDRVKASQLSESDAEAQMLEFVKQHVSPRTSPMCGNSICQDRRFMARHMPELEAFFHYR 130

Query: 121 SRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + TL  +A+R  P        LC  +  +  H     AL D
Sbjct: 131 NLDVSTLKELAKRWRPG-------LCDAFKKSNKHE----ALAD 163


>gi|295698463|ref|YP_003603118.1| oligoribonuclease [Candidatus Riesia pediculicola USDA]
 gi|291157191|gb|ADD79636.1| oligoribonuclease [Candidatus Riesia pediculicola USDA]
          Length = 184

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 22/174 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+R +K   I  D+E TGL+ K D+IIEI  +               +     K      
Sbjct: 1   MLR-DKKNLIWIDLEMTGLNPKRDKIIEIATIITDSQINILSEGPSIVIYQEEKYIEGMD 59

Query: 61  KL-------HGITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           +        +G+  E  +    +K + +        + +   +     +   D  F+   
Sbjct: 60  EWNKNTHTKNGLIQEVKRSLFNEKKAETETIQFLERWIHPGVSPMCGSSINQDRRFLFQY 119

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   N +     R ID  +I         + L             ++ H AL D
Sbjct: 120 MP--NLEKFFHYRHIDVSTIKELAKRWKPDILE--------NFFRKNFHRALQD 163


>gi|298345320|ref|YP_003718007.1| exoribonuclease II [Mobiluncus curtisii ATCC 43063]
 gi|304390877|ref|ZP_07372829.1| oligoribonuclease [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|298235381|gb|ADI66513.1| exoribonuclease II [Mobiluncus curtisii ATCC 43063]
 gi|304325760|gb|EFL93006.1| oligoribonuclease [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 212

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 60/176 (34%), Gaps = 24/176 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS--- 56
           M  K     +  D E TGLD   D +IE+  +    + +  +    + + P+    +   
Sbjct: 7   MGNKKTDPMVWIDCEMTGLDLHVDELIEVAVIVTDAELNPLDSGIDLLIKPSATAMNHMG 66

Query: 57  PEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINA 108
               ++H   G+  + L    S      +  D+          A+   ++   D  F+  
Sbjct: 67  EFVREMHTKSGLLAK-LDTGLSVEEAGRQVLDYVKRLVPEPGKAQLAGNSVHSDKAFLAK 125

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++  +          + TL  +A R +P          K YG+       H AL D
Sbjct: 126 QMPELINWLHYRIIDVSTLKELAMRWYP----------KVYGLAPEKTGNHRALGD 171


>gi|67901158|ref|XP_680835.1| hypothetical protein AN7566.2 [Aspergillus nidulans FGSC A4]
 gi|40742956|gb|EAA62146.1| hypothetical protein AN7566.2 [Aspergillus nidulans FGSC A4]
 gi|259483886|tpe|CBF79641.1| TPA: exonuclease, putative (AFU_orthologue; AFUA_2G14950)
           [Aspergillus nidulans FGSC A4]
          Length = 723

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 66/199 (33%), Gaps = 24/199 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E    +  +  +  I  V   D           + P          +  GIT E 
Sbjct: 346 LALDCEMCITEGGSSELTRISLVRW-DGEVVLDE---LVKP-RLPVIDYLTRFSGITKEM 400

Query: 70  LKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           L   P   +   I  +  +    + +  + H+   D+  +           L    I+DT
Sbjct: 401 LD--PVTTTLRDIQQKLLNIITPR-SILVGHSLNSDLNALK----------LTHPFIVDT 447

Query: 127 L-SIARRKHPSSRNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGSQINF 183
           +      + P  R  L  L ++Y G  I   +  H ++ D+  + ++  +    G Q   
Sbjct: 448 VFLYPHPRGPPLRASLKWLTQKYLGKEIQKGTTGHDSIEDARAVLELVKQKCEKGEQWGT 507

Query: 184 GFKTNEDRFFKEEKKTVPN 202
              +NE  F +  + + P 
Sbjct: 508 SDASNESIFKRLSRHSAPG 526


>gi|300859054|ref|YP_003784037.1| hypothetical protein cpfrc_01637 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686508|gb|ADK29430.1| hypothetical protein cpfrc_01637 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206756|gb|ADL11098.1| Oligoribonuclease [Corynebacterium pseudotuberculosis C231]
 gi|302331309|gb|ADL21503.1| Oligoribonuclease [Corynebacterium pseudotuberculosis 1002]
 gi|308277000|gb|ADO26899.1| Oligoribonuclease [Corynebacterium pseudotuberculosis I19]
          Length = 219

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 23/169 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFL---CPNGRKNSPEALKLH 63
           R +  D+E TGLD+    I+E+ A +   D +       + +        +       +H
Sbjct: 20  RLVWIDLEMTGLDTHRHVIVEVAALITDADLNILGEGVDLVVHATDAQLAEMDDYVTAMH 79

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINK 115
              G+T E      S         +   +       A    ++   D  FINA + R++ 
Sbjct: 80  ENSGLTQEIRSSTVSIEEAEDAVLELIAKHCDPQHPAPLAGNSIATDRSFINAYMPRLDN 139

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + ++  +ARR  P          + Y         H AL D
Sbjct: 140 ALHYRMVDVSSVKELARRWAP----------RVYFNQPQKGMAHRALAD 178


>gi|145294367|ref|YP_001137188.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum R]
 gi|140844287|dbj|BAF53286.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 360

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
           G+     R++ I  V L    +   TF   L     K  P    LHG+T+E       F 
Sbjct: 36  GIHPSTSRMVTIDLVTLSPTLEPVETFHAVLD---SKTDPGPFHLHGVTEEEFAGAKKFG 92

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            I        + +    + HN+    GFI +E +R   D
Sbjct: 93  QILKSLDRLIDGR--TLLIHNSARTWGFIVSEAKRAMND 129


>gi|13097411|gb|AAH03445.1| Rexo2 protein [Mus musculus]
          Length = 205

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 22/169 (13%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLH 63
            R +  D+E TGLD + D+IIE+   +   D +       + +          +   K H
Sbjct: 9   QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 68

Query: 64  ----GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
               G+T    +   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 69  HGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQFMK 128

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  + RR +P            Y       + H AL D
Sbjct: 129 HLHYRIIDVSTVKELCRRWYPED----------YEFAPKKAASHRALDD 167


>gi|225435975|ref|XP_002271328.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296083947|emb|CBI24335.3| unnamed protein product [Vitis vinifera]
          Length = 245

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 28/179 (15%)

Query: 1   MIRKNKMRK--IVFDIETTGLDSKNDRIIEIGAVELLDYSK---------TNRTFQVFLC 49
           MI   + R   +  D+E TGL+ + DRI+EI  +                 ++T +    
Sbjct: 56  MIPSEQYRLPLVWIDLEMTGLNVEVDRILEIACIITDGNLIKSVEGPDLVIHQTKECLDN 115

Query: 50  PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF----FNEQNAEWIAHNAKFDVGF 105
                 S  +    G+T + L+   S      +  +F              ++   D  F
Sbjct: 116 MGEWCQSHHSAS--GLTKKVLRSTISEQEAEKQVIEFVKRNVGTYTPLLAGNSVYMDFLF 173

Query: 106 INAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   +  +          + ++ ++  R +P                 S  +KH A+ D
Sbjct: 174 LKKYMPDLASLFSHVLVDVSSIKALCIRWYPRDSKK----------APSKENKHRAMDD 222


>gi|116515281|ref|YP_802910.1| SbcB [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116257135|gb|ABJ90817.1| exodeoxyribonuclease I [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 475

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 65/194 (33%), Gaps = 41/194 (21%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--------PNGRKNS 56
           +K + I +D ET G +   D++ +  ++E      T+  F   +         P      
Sbjct: 6   SKKKIIFYDYETFGKNVALDKVSQFCSIE------TDNKFSYIIKKTILFCYPPIDYLPD 59

Query: 57  PEALKLHGITDEFLKDKPSFSSIF--SEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRI 113
           PEA+ +  I  ++   K   +  F   +  D F+++N   I +N   FD         R 
Sbjct: 60  PEAILITKILPQYTY-KYGLNEYFLSKKIHDIFSQKNICIIGYNNINFDNLITRNIFYRN 118

Query: 114 NKDPLDPSRI-----IDTLSIARRKHPSSRNDLNSLCKRYG---------------ITIS 153
             DP + S        D L+I R  +         +C  Y                  I 
Sbjct: 119 LFDPYEWSWKNNNFSWDILNILRAFYIFLPKS---MCWYYNSNGTVSFKLSDITLVNNIK 175

Query: 154 HRSKHGALLDSHLL 167
           H   H A  D +  
Sbjct: 176 HIHIHDAYSDVYAT 189


>gi|108800606|ref|YP_640803.1| oligoribonuclease [Mycobacterium sp. MCS]
 gi|119869745|ref|YP_939697.1| oligoribonuclease [Mycobacterium sp. KMS]
 gi|126436222|ref|YP_001071913.1| oligoribonuclease [Mycobacterium sp. JLS]
 gi|122976715|sp|Q1B5T7|ORN_MYCSS RecName: Full=Oligoribonuclease
 gi|166216269|sp|A3Q2P5|ORN_MYCSJ RecName: Full=Oligoribonuclease
 gi|166216270|sp|A1UJ99|ORN_MYCSK RecName: Full=Oligoribonuclease
 gi|108771025|gb|ABG09747.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium sp. MCS]
 gi|119695834|gb|ABL92907.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium sp. KMS]
 gi|126236022|gb|ABN99422.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium sp. JLS]
          Length = 215

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 61/173 (35%), Gaps = 27/173 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGR---KNSPEALK 61
           +   +  D E TGLD ++D +IEI   V   D +       V +           P   +
Sbjct: 2   RDELVWIDCEMTGLDLRSDLLIEIAVLVTDADLNILGDGLDVVIHAPDEALDAMIPVVTE 61

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRI 113
           +H   G+ +E        ++      D+        + A    ++   D GFI  ++ ++
Sbjct: 62  MHTRSGLIEEVRASTVDLATAEEMVLDYIRGHVKQAKTAPLAGNSIATDRGFIARDMAKL 121

Query: 114 NKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             D     R+ID  SI    RR +P            +G        H AL D
Sbjct: 122 --DDYLHYRMIDVSSIKELCRRWYPR---------IYFGQP-EKGLAHRALAD 162


>gi|88800702|ref|ZP_01116261.1| oligoribonuclease [Reinekea sp. MED297]
 gi|88776566|gb|EAR07782.1| oligoribonuclease [Reinekea sp. MED297]
          Length = 182

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 62/175 (35%), Gaps = 25/175 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M +K+ +  I  D+E TGL+ + D+I+EI   V   D +       + +  +        
Sbjct: 1   MEKKSNL--IWIDLEMTGLNPETDQILEIATIVTDKDLNVLAEGPSLVIHQSDAVLDGMD 58

Query: 60  LKLH------GITDEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
                     G+T E +++       + +   +    +     +    ++   D  F+  
Sbjct: 59  EWCTTHHGESGLT-EKVRNSSISVAQAEAETLAFVEQWVEPGCSPLCGNSIWQDRRFLIR 117

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  ++      +  + TL     +    R +L +  K+ G        H AL D
Sbjct: 118 YMPALDSYCHYRNIDVSTLKELAARW---RPELLNGVKKAG-------SHRALDD 162


>gi|325917447|ref|ZP_08179656.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325536321|gb|EGD08108.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 194

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 60/176 (34%), Gaps = 35/176 (19%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEAL------ 60
           R I  D+E TGLD+  D IIEI  +       T+    V    P      P A       
Sbjct: 10  RLIWIDLEMTGLDTDRDSIIEIATI------VTDAQLNVLAEGPELAIAHPLATLEAMDE 63

Query: 61  ---KLHGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
                H  +       D  +    + +   +   ++     +    ++   D  F++ ++
Sbjct: 64  WNRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQM 123

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            R+ +     +  + T+  +ARR  P+  N             +  S H AL D  
Sbjct: 124 SRLERYFHYRNLDVSTIKELARRWAPTVANG-----------FAKSSAHTALSDVR 168


>gi|58265746|ref|XP_570029.1| MipD [Cryptococcus neoformans var. neoformans JEC21]
 gi|57226261|gb|AAW42722.1| MipD, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 417

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 11/169 (6%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +K   + +  D E  G+   N     +  V +++Y         F+ P     +     +
Sbjct: 135 QKEPGQYLAIDCEMVGVGP-NGMENTLARVSIVNYHGAV-ILDTFVQP-REPVTDYRTWI 191

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G+    L   P F  +  +  +  +++    I H    D+  +   L        D  +
Sbjct: 192 SGVKQSDLLGAPQFDEVNKQVANLLHDK--ILIGHAIDNDLKVL--MLTHPGPLTRDTQK 247

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                 IA+ K P  +  L+ L    G+ I     H +++D+ +   +Y
Sbjct: 248 YKPLQEIAKNKRPGLK-KLSELL--LGVQI-QTGAHSSVVDARVAMALY 292


>gi|134109081|ref|XP_776655.1| hypothetical protein CNBC1480 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|83288433|sp|Q5KJQ4|REXO4_CRYNE RecName: Full=RNA exonuclease 4
 gi|50259335|gb|EAL22008.1| hypothetical protein CNBC1480 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 408

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 11/169 (6%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +K   + +  D E  G+   N     +  V +++Y         F+ P     +     +
Sbjct: 126 QKEPGQYLAIDCEMVGVGP-NGMENTLARVSIVNYHGAV-ILDTFVQP-REPVTDYRTWI 182

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G+    L   P F  +  +  +  +++    I H    D+  +   L        D  +
Sbjct: 183 SGVKQSDLLGAPQFDEVNKQVANLLHDK--ILIGHAIDNDLKVL--MLTHPGPLTRDTQK 238

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
                 IA+ K P  +  L+ L    G+ I     H +++D+ +   +Y
Sbjct: 239 YKPLQEIAKNKRPGLK-KLSELL--LGVQI-QTGAHSSVVDARVAMALY 283


>gi|326483116|gb|EGE07126.1| RNA binding protein [Trichophyton equinum CBS 127.97]
          Length = 637

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 85/262 (32%), Gaps = 51/262 (19%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R I+  + TT    G+    D   +IE+G +  +  +  + +R   V + P     +P  
Sbjct: 13  RYIIIHVATTCDEHGVYVTKDSAEVIELGWILLDTKNCEEIHRE-SVLVKPVNTPITPLC 71

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
             L  +T E ++   +F    + F  F  E     ++ N +F    +++   R+      
Sbjct: 72  TSLTTLTWEHVRSAGTFRDAINRFDTFAQEN---LLSKNLEFAFVTLDSWDMRVQLPREA 128

Query: 116 --------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGITISHRSK--- 157
                     L  SR  D  +  +R         P   +DL ++C    +     S    
Sbjct: 129 RDKAVVLPPYLQHSRTFDLRTEYQRWQQHHPESLPFGPSDLANICAALEVEPVQSSAPIK 188

Query: 158 HG------ALLDS---------HLLSDVYIKMMVGGSQINFG--FKTNEDRFFKEEKKTV 200
           H       AL  +           L+ V   ++      +      T       + +  +
Sbjct: 189 HNLPFHLQALAPASPRRAMEEVITLARVLRGLIRKSQPPHEHPEIMTRPMDARADVRAFL 248

Query: 201 PNISLLKRDKPLFTRITKEELD 222
              S +     L    T+ EL+
Sbjct: 249 AERSKVLHMSGLPHDTTQSELE 270


>gi|326475517|gb|EGD99526.1| RNA binding protein [Trichophyton tonsurans CBS 112818]
          Length = 701

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 85/262 (32%), Gaps = 51/262 (19%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R I+  + TT    G+    D   +IE+G +  +  +  + +R   V + P     +P  
Sbjct: 83  RYIIIHVATTCDEHGVYVTKDSAEVIELGWILLDTKNCEEIHRE-SVLVKPVNTPITPLC 141

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
             L  +T E ++   +F    + F  F  E     ++ N +F    +++   R+      
Sbjct: 142 TSLTTLTWEHVRSAGTFRDAINRFDTFAQEN---LLSKNLEFAFVTLDSWDMRVQLPREA 198

Query: 116 --------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGITISHRSK--- 157
                     L  SR  D  +  +R         P   +DL ++C    +     S    
Sbjct: 199 RDKAVVLPPYLQHSRTFDLRTEYQRWQQHHPESLPFGPSDLANICAALEVEPVQSSAPIK 258

Query: 158 HG------ALLDS---------HLLSDVYIKMMVGGSQINFG--FKTNEDRFFKEEKKTV 200
           H       AL  +           L+ V   ++      +      T       + +  +
Sbjct: 259 HNLPFHLQALAPASPRRAMEEVITLARVLRGLIRKSQPPHEHPEIMTRPMDARADVRAFL 318

Query: 201 PNISLLKRDKPLFTRITKEELD 222
              S +     L    T+ EL+
Sbjct: 319 AERSKVLHMSGLPHDTTQSELE 340


>gi|327301221|ref|XP_003235303.1| RNA binding protein [Trichophyton rubrum CBS 118892]
 gi|326462655|gb|EGD88108.1| RNA binding protein [Trichophyton rubrum CBS 118892]
          Length = 637

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 85/262 (32%), Gaps = 51/262 (19%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R I+  + TT    G+    D   +IE+G +  +  +  + +R   V + P     +P  
Sbjct: 13  RYIIIHVATTCDEHGVYVTKDSAEVIELGWILLDTKNCEEIHRE-SVLVKPVNTPITPLC 71

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
             L  +T E ++   +F    + F  F  E     ++ N +F    +++   R+      
Sbjct: 72  TSLTTLTWEHVRSAGTFRDAINRFDTFAQEN---LLSKNLEFAFVTLDSWDMRVQLPREA 128

Query: 116 --------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGITISHRSK--- 157
                     L  SR  D  +  +R         P   +DL ++C    +     S    
Sbjct: 129 RDKAVVLPPYLQHSRTFDLRTEYQRWQQHHPESLPFGPSDLANICAALEVEPVQSSAPIK 188

Query: 158 HG------ALLDS---------HLLSDVYIKMMVGGSQINFG--FKTNEDRFFKEEKKTV 200
           H       AL  +           L+ V   ++      +      T       + +  +
Sbjct: 189 HNLPFHLQALAPASPRRAMEEVITLARVLRGLIRKSQPPHEHPEIMTRPMDARADVRAFL 248

Query: 201 PNISLLKRDKPLFTRITKEELD 222
              S +     L    T+ EL+
Sbjct: 249 AERSKVLHMSGLPHDTTQSELE 270


>gi|315048959|ref|XP_003173854.1| hypothetical protein MGYG_04027 [Arthroderma gypseum CBS 118893]
 gi|311341821|gb|EFR01024.1| hypothetical protein MGYG_04027 [Arthroderma gypseum CBS 118893]
          Length = 637

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 85/262 (32%), Gaps = 51/262 (19%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R I+  + TT    G+    D   +IE+G +  +  +  + +R   V + P     +P  
Sbjct: 13  RYIIIHVATTCDEHGVYVTKDSAEVIELGWILLDTKNCEEIHRE-SVLVKPVNTPITPLC 71

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
             L  +T E ++   +F    + F  F  E     ++ N +F    +++   R+      
Sbjct: 72  TSLTTLTWEHVRSAGTFRDAINRFDTFAQEN---LLSKNLEFAFVTLDSWDMRVQLPREA 128

Query: 116 --------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGITISHRSK--- 157
                     L  SR  D  +  +R         P   +DL ++C    +     S    
Sbjct: 129 RDKAVVLPPYLQHSRTFDLRTEYQRWQQHHPESLPFGPSDLANICAALEVEPVQSSAPIK 188

Query: 158 HG------ALLDS---------HLLSDVYIKMMVGGSQINFG--FKTNEDRFFKEEKKTV 200
           H       AL  +           L+ V   ++      +      T       + +  +
Sbjct: 189 HNLPFHLQALAPASPRRAMEEVITLARVLRGLIRKSQPPHEHPEIMTRPMDARADVRAFL 248

Query: 201 PNISLLKRDKPLFTRITKEELD 222
              S +     L    T+ EL+
Sbjct: 249 AERSKVLHMSGLPHDTTQSELE 270


>gi|296817553|ref|XP_002849113.1| asparagine-rich protein [Arthroderma otae CBS 113480]
 gi|238839566|gb|EEQ29228.1| asparagine-rich protein [Arthroderma otae CBS 113480]
          Length = 637

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 85/262 (32%), Gaps = 51/262 (19%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R I+  + TT    G+    D   +IE+G +  +  +  + +R   V + P     +P  
Sbjct: 13  RYIIIHVATTCDEHGVYVTKDSAEVIELGWILLDTKNCEEIHRE-SVLVKPVNTPITPLC 71

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
             L  +T E ++   +F    + F  F  E     ++ N +F    +++   R+      
Sbjct: 72  TSLTTLTWEHVRSAGTFRDAINRFDTFAQEN---LLSKNLEFAFVTLDSWDMRVQLPREA 128

Query: 116 --------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGITISHRSK--- 157
                     L  SR  D  +  +R         P   +DL ++C    +     S    
Sbjct: 129 RDKAVVLPPYLQHSRTFDLRTEYQRWQQHHPESLPFGPSDLANICAALEVEPVQSSAPIK 188

Query: 158 HG------ALLDS---------HLLSDVYIKMMVGGSQINFG--FKTNEDRFFKEEKKTV 200
           H       AL  +           L+ V   ++      +      T       + +  +
Sbjct: 189 HNLPFHLQALAPASPRRAMEEVITLARVLRGLIRKSQPPHEHPEIMTRPMDARADVRAFL 248

Query: 201 PNISLLKRDKPLFTRITKEELD 222
              S +     L    T+ EL+
Sbjct: 249 AERSKVLHMSGLPHDTTQSELE 270


>gi|242791658|ref|XP_002481802.1| RNA binding protein (Arp), putative [Talaromyces stipitatus ATCC
           10500]
 gi|218718390|gb|EED17810.1| RNA binding protein (Arp), putative [Talaromyces stipitatus ATCC
           10500]
          Length = 612

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 31/171 (18%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R IV  + TT    G+    D   +IE+G +  +  +  + +R   + + P     +P  
Sbjct: 13  RYIVIHVATTCDEHGVYVTKDSAEVIELGWILLDTKNCDELHRE-SILVKPVNTPITPLC 71

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
             L  +T E +++  SF    + F  F  E     I+ N +F    +++   R+      
Sbjct: 72  TSLTTLTWENVRNAGSFRDAVNRFDAFAQEH---LISKNLEFSFVTLDSWDLRVQLPREA 128

Query: 116 --------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGIT 151
                     L  SR  D  +  +R         P   + L ++C    + 
Sbjct: 129 RDKAVVLPPYLQHSRTFDLRTEYQRWQTHHPESLPFGPSSLANICAALEVE 179


>gi|212534952|ref|XP_002147632.1| RNA binding protein (Arp), putative [Penicillium marneffei ATCC
           18224]
 gi|210070031|gb|EEA24121.1| RNA binding protein (Arp), putative [Penicillium marneffei ATCC
           18224]
          Length = 604

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 31/171 (18%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R IV  + TT    G+    D   +IE+G +  +  +  + +R   + + P     +P  
Sbjct: 13  RYIVIHVATTCDEHGVYVTKDSAEVIELGWILLDTKNCDELHRE-SILVKPVNTPITPLC 71

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
             L  +T E +++  SF    + F  F  E     I+ N +F    +++   R+      
Sbjct: 72  TSLTTLTWENVRNAGSFRDAVNRFDAFAQEH---LISKNLEFSFVTLDSWDLRVQLPREA 128

Query: 116 --------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGIT 151
                     L  SR  D  +  +R         P   + L ++C    + 
Sbjct: 129 RDKAVVLPPYLQHSRTFDLRTEYQRWQTHHPESLPFGPSSLANICAALEVE 179


>gi|294625309|ref|ZP_06703946.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292600378|gb|EFF44478.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 194

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 31/174 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYS---------------KTNRTFQVFLCPNG 52
           R I  D+E TGLD+  D IIEI  +                     +T      +   N 
Sbjct: 10  RLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLETLEAMDEW-NRNQ 68

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            + S    ++    D  +    + +   +   ++     +    ++   D  F++ ++ R
Sbjct: 69  HRRSGLWQRV---LDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMSR 125

Query: 113 INKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           + +     +  + T+  +ARR  P+  N             +  S H AL D  
Sbjct: 126 LERYFHYRNLDVSTIKELARRWAPTVANG-----------FAKSSAHTALSDVR 168


>gi|289450724|ref|YP_003474538.1| exonuclease [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185271|gb|ADC91696.1| exonuclease [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 335

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 50/220 (22%)

Query: 7   MRKIVFDIE----TTGLDSKND-------RIIEIGAVELLDYSKTNRTFQVFLCPNG-RK 54
           M+  V D+E      G   +          I+EIGA+ L D      +F   +     RK
Sbjct: 1   MKFAVLDLEWNSAPPGGKPRQRGGKKLVFEIMEIGALMLDDRGTVLGSFHRRIRAEVYRK 60

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF--------------------------- 87
            +P   K+  + +  L+    F +++++F  +                            
Sbjct: 61  INPYIAKVTKVKNADLRCGEPFVTVYADFRAWLTEMANASGGAEVSAAGGEEVPKSMPSA 120

Query: 88  -------NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID--TLSIARRKHPSSR 138
                    +     A     D+  + A        P      +D   +     +    +
Sbjct: 121 AGGGELGRSEAIVLCAWGCN-DMQNLKANCDFFGCRPKLNFPSLDIQYVYGLAVEKKVGQ 179

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             L    +R     +  + H AL D+   + +   ++  G
Sbjct: 180 RKLEEAVERLTADFAG-TWHEALSDAAAAAMILRDLLAHG 218


>gi|227495721|ref|ZP_03926032.1| oligoribonuclease [Actinomyces urogenitalis DSM 15434]
 gi|226834741|gb|EEH67124.1| oligoribonuclease [Actinomyces urogenitalis DSM 15434]
          Length = 206

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 30/178 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-- 57
           M   + +  +  D E TGLD   D +IE+  V    +         V + P  +      
Sbjct: 1   MTTSDPL--VWIDCEMTGLDLGKDALIEVAVVVTDYELKPLGEGIDVLIKPPAQALEQMN 58

Query: 58  -EALKLH---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINA 108
               ++H   G+ DE L    + S       D+        + A+   ++   D  F+  
Sbjct: 59  DFVRQMHTSSGLLDE-LDGGLTMSEAQRVVLDYVKSLVPQARTAQLAGNSVGTDKTFLAR 117

Query: 109 ELQRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++  +  D L   RI+D  SI   A+R +P +          Y         H AL D
Sbjct: 118 DMPEL-IDYLH-YRIVDVSSIKELAKRWYPRT----------YFQAPEKHGGHRALAD 163


>gi|325524019|gb|EGD02205.1| oligoribonuclease [Burkholderia sp. TJI49]
          Length = 208

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 61/179 (34%), Gaps = 37/179 (20%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEAL-- 60
           +N++  +  D+E TGLD  NDRIIEI  V       TN T  + +  P    +  +A   
Sbjct: 15  RNELNLVWLDMEMTGLDPDNDRIIEIAVV------VTNSTLDIAVEGPVFAIHQSDATLA 68

Query: 61  -------KLHGITDEFLKDKPSFSSIFSE---------FWDFFNEQNAEWIAHNAKFDVG 104
                    HG     L D+   S++               + +   +    ++   D  
Sbjct: 69  KMDDWNKSTHG--RSGLIDRVRASTVTEAEAAAQLQAFLMQYVSPGKSPMCGNSICQDRR 126

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   +  + +     +  + TL    R+   +                 R+ H AL D
Sbjct: 127 FMARWMPELERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 175


>gi|324520531|gb|ADY47658.1| ERI1 exoribonuclease 3 [Ascaris suum]
          Length = 291

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 6/91 (6%)

Query: 9   KIVFDIETTGLDSKN----DRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKN-SPEALKL 62
            +V D E T   +        IIE   V+      +    F  ++ P  R   +     L
Sbjct: 69  FLVLDFEATCEQNAKIQPVQEIIEFPVVQFCTKTLQEVARFHEYVHPTERPVLTSFCTNL 128

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAE 93
            GI  E + ++     + ++F  + ++Q   
Sbjct: 129 TGIVQEMVDNQMILPDVLAKFRRWLSQQCLI 159


>gi|324519006|gb|ADY47259.1| ERI1 exoribonuclease 3 [Ascaris suum]
          Length = 291

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 6/91 (6%)

Query: 9   KIVFDIETTGLDSKN----DRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKN-SPEALKL 62
            +V D E T   +        IIE   V+      +    F  ++ P  R   +     L
Sbjct: 69  FLVLDFEATCEQNAKIQPVQEIIEFPVVQFCTKTLQEVARFHEYVHPTERPVLTSFCTNL 128

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAE 93
            GI  E + ++     + ++F  + ++Q   
Sbjct: 129 TGIVQEMVDNQMILPDVLAKFRRWLSQQCLI 159


>gi|118619032|ref|YP_907364.1| oligoribonuclease [Mycobacterium ulcerans Agy99]
 gi|166216272|sp|A0PU74|ORN_MYCUA RecName: Full=Oligoribonuclease
 gi|118571142|gb|ABL05893.1| oligoribonuclease Orn [Mycobacterium ulcerans Agy99]
          Length = 215

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 29/174 (16%)

Query: 7   MRK--IVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPE---AL 60
           MR+  +  D E TGLD   D++IEI A V   D +       V +  +    S       
Sbjct: 1   MREELVWIDCEMTGLDLGPDKLIEIAALVTDADLNILGDGVDVVIHADDAALSSMVDVVA 60

Query: 61  KLH---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQR 112
            +H   G+T+E        ++  +   D+  E     + A    ++   D  FI  ++  
Sbjct: 61  DMHSRSGLTEEVRASTVDMATAEAMVLDYIGEHVKQPKTAPLAGNSIATDRSFIARDMPA 120

Query: 113 INKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  D     R+ID  SI    RR +P            +G        H AL D
Sbjct: 121 L--DAFLHYRMIDVSSIKELCRRWYPR---------IYFGQP-PKGLAHRALAD 162


>gi|328710082|ref|XP_001950486.2| PREDICTED: oligoribonuclease, mitochondrial-like [Acyrthosiphon
           pisum]
          Length = 212

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 30/178 (16%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGR---KNSP 57
              N+   + FD E TGLD  +  +IE   +      K    +  + +  + +       
Sbjct: 32  TMNNEHNIVWFDGEMTGLDCNHHTLIEAAIIITDKNLKVLAESPNIIIHQSDKVLENMEE 91

Query: 58  EALKLHGI---TDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAEL 110
            + K HGI   T+   K   S        ++F      +       ++   D  FI   +
Sbjct: 92  WSKKHHGISGLTENVRKSNISIEQADQMLYEFIKPFAPKGVCPLAGNSIHMDRTFIRKYM 151

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK-----HGALLD 163
            ++  +     R+ID             + L  L KR+   +++        H AL D
Sbjct: 152 PKL--ESHLSYRLIDV------------STLKELLKRWKPELANEVPIKSGKHRALDD 195


>gi|239995299|ref|ZP_04715823.1| hypothetical protein AmacA2_12527 [Alteromonas macleodii ATCC
           27126]
          Length = 165

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 22/177 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEA 59
           +RKN +  I  DIE +G  + +   IEIG V      + K  R F  ++  + +     A
Sbjct: 1   MRKNTLPTI-IDIEASGFGAAS-YPIEIGIVRYDGAKWCKLLRPFDSWVHWDRK-----A 53

Query: 60  LKLHGITDEFLKDKPSF-SSIFSEFWDFFNEQNAEWIAHN--AKFDVGFINAELQRINKD 116
             LHGIT + L+ +      +  E  +F        + ++     D  ++         +
Sbjct: 54  ESLHGITQQMLQTRGEEPRKVCVELNNFLGNT----VVYSDGWVVDNPWLIKLYAAAQVE 109

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                R ++ +    + +       + L  +  +      +H A  D+ ++   Y K
Sbjct: 110 MSFTCRALEYILSEAQMNQWHEVK-SRLASQLDV-----KRHRASSDAMVIQQTYAK 160


>gi|212716446|ref|ZP_03324574.1| hypothetical protein BIFCAT_01370 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660699|gb|EEB21274.1| hypothetical protein BIFCAT_01370 [Bifidobacterium catenulatum DSM
           16992]
          Length = 216

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNG---RKNSPEALKLH 63
           R I  D E TGLD  +D + EI  V    D +  +      + P+       +     +H
Sbjct: 16  RLIWIDCEMTGLDIFHDELCEISVVPTDFDLNVLDEGIDFVIKPSDAAVANMNDFVRAMH 75

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-----AHNAKFDVGFINAELQRINK 115
              G+ +E  ++  S      +  ++ +    + +      ++   D  F++  +  + +
Sbjct: 76  TRSGLINE-WENGLSVEEAERKVTEYVSRFTPDGVKPLLAGNSIGSDKKFLDRYMPNLME 134

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + TL  +ARR +P            Y         H AL D
Sbjct: 135 HLHYRVIDVSTLKELARRWYP----------AVYNNRPPKNGGHRALAD 173


>gi|5524927|emb|CAB50866.1| deoxyribonuclease III (DNase III) [Homo sapiens]
          Length = 304

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 83/255 (32%), Gaps = 46/255 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAV------------------ELLDYSKTNRTFQVFL 48
              I FD+E TGL     ++ E+  +                   +    +      + +
Sbjct: 2   QTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPPPRVVDKLSLCV 61

Query: 49  CPNGRKNSPEALKLHGITDEFLK--DKPSFSSIFSEFWDFFNE---QNAEWIAHN-AKFD 102
            P G+  SP A ++ G++   L    +  F    +     F     Q    +AHN  ++D
Sbjct: 62  AP-GKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDRYD 120

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGIT 151
              + AEL  +     LD +  +D+++  +            P     L S+  R YG +
Sbjct: 121 FPLLQAELAMLGLTSALDGAFCVDSITALKALERASSPSEHGPRKSYSLGSIYTRLYGQS 180

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                 H A  D   L    + +     Q    +     R F   +     ++   R KP
Sbjct: 181 PPD--SHTAEGDVLAL----LSICQWRPQALLRWVDAHARPFGTIRPMY-GVTASARTKP 233

Query: 212 LFTRITKEELDEHDK 226
             + +T      H  
Sbjct: 234 RPSAVT---TTAHLA 245


>gi|18921087|gb|AAL82504.1| three prime repair exonuclease 1 [Homo sapiens]
 gi|54696966|gb|AAV38855.1| three prime repair exonuclease 1 [Homo sapiens]
 gi|54696968|gb|AAV38856.1| three prime repair exonuclease 1 [Homo sapiens]
 gi|61358085|gb|AAX41500.1| three prime repair exonuclease 1 [synthetic construct]
 gi|61358090|gb|AAX41501.1| three prime repair exonuclease 1 [synthetic construct]
 gi|119585287|gb|EAW64883.1| three prime repair exonuclease 1, isoform CRA_g [Homo sapiens]
          Length = 304

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 83/255 (32%), Gaps = 46/255 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAV------------------ELLDYSKTNRTFQVFL 48
              I FD+E TGL     ++ E+  +                   +    +      + +
Sbjct: 2   QTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPPPRVVDKLSLCV 61

Query: 49  CPNGRKNSPEALKLHGITDEFLK--DKPSFSSIFSEFWDFFNE---QNAEWIAHN-AKFD 102
            P G+  SP A ++ G++   L    +  F    +     F     Q    +AHN  ++D
Sbjct: 62  AP-GKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDRYD 120

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGIT 151
              + AEL  +     LD +  +D+++  +            P     L S+  R YG +
Sbjct: 121 FPLLQAELAMLGLTSALDGAFCVDSITALKALERASSPSEHGPRKSYSLGSIYTRLYGQS 180

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                 H A  D   L    + +     Q    +     R F   +     ++   R KP
Sbjct: 181 PPD--SHTAEGDVLAL----LSICQWRPQALLRWVDAHARPFGTIRPMY-GVTASARTKP 233

Query: 212 LFTRITKEELDEHDK 226
             + +T      H  
Sbjct: 234 RPSAVT---TTAHLA 245


>gi|331088918|ref|ZP_08337827.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330406516|gb|EGG86024.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 723

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 28/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG--ITDE 68
           V D+ETTGLD  ND ++ I                    P+        +  +   + + 
Sbjct: 87  VLDVETTGLDIYNDILVGICLY----------------NPD---LPSAYVPFNHTDLQNR 127

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127
            ++ + +     +    +   ++ + I HN KFD   I     QRI       +   DT 
Sbjct: 128 RVEGQMTEEECKAVMLPYLANKDLKCINHNIKFDDKMITFNWGQRI------ANVWWDTN 181

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
             +   + + ++ L  L  +Y
Sbjct: 182 IASWVLNENEKHGLKPLYNKY 202


>gi|289677835|ref|ZP_06498725.1| exonuclease I [Pseudomonas syringae pv. syringae FF5]
          Length = 166

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 44/137 (32%), Gaps = 12/137 (8%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ +NDR +++  +    D ++      +    +      P A  + GIT   L
Sbjct: 9   DYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMITGITPATL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI----- 123
            +K        +      +        +N  +FD         R   DP           
Sbjct: 69  AEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREWQGGNSR 128

Query: 124 ---IDTLSIARRKHPSS 137
              ID +  A    P  
Sbjct: 129 WDLIDVVRAAYALRPDG 145


>gi|48146355|emb|CAG33400.1| TREX1 [Homo sapiens]
          Length = 304

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 83/255 (32%), Gaps = 46/255 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAV------------------ELLDYSKTNRTFQVFL 48
              I FD+E TGL     ++ E+  +                   +    +      + +
Sbjct: 2   QTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPPPRVVDKLSLCV 61

Query: 49  CPNGRKNSPEALKLHGITDEFLK--DKPSFSSIFSEFWDFFNE---QNAEWIAHN-AKFD 102
            P G+  SP A ++ G++   L    +  F    +     F     Q    +AHN  ++D
Sbjct: 62  AP-GKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDRYD 120

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGIT 151
              + AEL  +     LD +  +D+++  +            P     L S+  R YG +
Sbjct: 121 FPLLQAELAMLGLTSALDGAFCVDSITALKALERASSPSEHGPRKSYSLGSIYTRLYGQS 180

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                 H A  D   L    + +     Q    +     R F   +     ++   R KP
Sbjct: 181 PPD--SHTAEGDVLAL----LSICQWRPQALLRWVDAHARPFGTIRPMY-GVTASARTKP 233

Query: 212 LFTRITKEELDEHDK 226
             + +T      H  
Sbjct: 234 RPSAVT---TTAHLA 245


>gi|313240126|emb|CBY32478.1| unnamed protein product [Oikopleura dioica]
          Length = 265

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 18/169 (10%)

Query: 6   KMRKIVFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K + +  D E  G+     + ++   +V   D       F    C    K +     + G
Sbjct: 67  KNKIVAIDCEMVGIGFGGKKSVLARASVVSGDGEVLIDEF----CGAPEKVTDYRTLVSG 122

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +  + LKD   F ++  +  +F +      + H    D+  +     +IN    D   I 
Sbjct: 123 VRPKDLKDAQPFEALRKKVKEFLD--GKILVGHGLSNDLKCL-----KINHPAAD---IR 172

Query: 125 DTLSIARRKHPSSRNDLNSLCK-RYGITISHRSKHGALLDSHLLSDVYI 172
           DT +  +     S+  L  L   R GI I     H  ++D+     +Y+
Sbjct: 173 DTANYFKNA-KGSKQSLQVLAADRLGIKIQTGE-HSPVVDARAALRIYL 219


>gi|290462733|gb|ADD24414.1| Oligoribonuclease, mitochondrial [Lepeophtheirus salmonis]
          Length = 216

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 53/174 (30%), Gaps = 22/174 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN------ 55
           R N+ R +  D E TGLD + D ++E+  +    +   T     + +             
Sbjct: 33  RSNRDRIVWIDCEMTGLDLEVDVLMEVAVIITDKNLKPTKEGLNIVIHQPDSVLDAMTGF 92

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAK-FDVGFINAE 109
             E+ +  G+T      K       ++  +F   +         +A N+  FD  F+   
Sbjct: 93  PKESHEKTGLTAACRMSKIGVKQAENDICNFIKMECGTTFGRPLLAGNSVGFDAKFLRKY 152

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  +          + T+          +                R  H AL D
Sbjct: 153 MPSVTDILHYRIIDVSTIHECYNLWDREK---------LKFCPKKRKTHRALDD 197


>gi|319957123|ref|YP_004168386.1| DNA polymerase i [Nitratifractor salsuginis DSM 16511]
 gi|319419527|gb|ADV46637.1| DNA polymerase I [Nitratifractor salsuginis DSM 16511]
          Length = 904

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 78/240 (32%), Gaps = 50/240 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD ETTGLD+++ +++        + +        +L                     
Sbjct: 336 VAFDTETTGLDTRSAKMVGFSFAFEEEKAYYVPVAHSYL--------------------G 375

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  + S  +           +    +  N KFD+  + + L+    +P++P    DT+ +
Sbjct: 376 VGPQVSLEAAKKAIEKLMRHR---IVGQNLKFDLSLLYSHLE---MEPIEPEA--DTMIL 427

Query: 130 ARRKHPSSRNDLNSLCKRY-------------------GITISHRSKHGALLDSHLLSDV 170
           A    P SR  L+ L +++                    + +   + + A  D+     +
Sbjct: 428 AWLLDPGSRVGLDILAQKFLGYQMKSFKETVKKGEDFSSVALEEAAFY-AAEDAWATRQL 486

Query: 171 YIKMMVGGSQINFG--FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228
           Y ++     +       K  ++  F      +    L  R      R  KEEL      +
Sbjct: 487 YFRLTELFKKGGLEHLLKEAKEVEFPFINVLIAMERLGIRVDTKHLRSLKEELSAELARL 546


>gi|313225143|emb|CBY20936.1| unnamed protein product [Oikopleura dioica]
          Length = 265

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 18/169 (10%)

Query: 6   KMRKIVFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           K + +  D E  G+     + ++   +V   D       F    C    K +     + G
Sbjct: 67  KNKIVAIDCEMVGIGFGGKKSVLARASVVSGDGEVLIDEF----CGAPEKVTDYRTLVSG 122

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +  + LKD   F ++  +  +F +      + H    D+  +     +IN    D   I 
Sbjct: 123 VRPKDLKDAQPFEALRKKVKEFLD--GKILVGHGLSNDLKCL-----KINHPATD---IR 172

Query: 125 DTLSIARRKHPSSRNDLNSLCK-RYGITISHRSKHGALLDSHLLSDVYI 172
           DT +  +     S+  L  L   R GI I     H  ++D+     +Y+
Sbjct: 173 DTANYFKNA-KGSKQSLQVLAADRLGIKIQTGE-HSPVVDARAALRIYL 219


>gi|242078555|ref|XP_002444046.1| hypothetical protein SORBIDRAFT_07g006350 [Sorghum bicolor]
 gi|241940396|gb|EES13541.1| hypothetical protein SORBIDRAFT_07g006350 [Sorghum bicolor]
          Length = 122

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 9  KIVFDIETT---GLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRK-NSPEALKL 62
           +V D E T   G       IIE  +V L+D    +T  TF+ ++ P      +     L
Sbjct: 5  FVVIDFEATCQEGSVIYPQEIIEFTSV-LVDGATGRTLSTFRTYVRPRHHPCLTDFYRDL 63

Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW 94
           GIT + +    S +        +  E  A+ 
Sbjct: 64 TGITQDDVDAGVSLAEALEMHDRWLEEHGAKL 95


>gi|89093316|ref|ZP_01166265.1| hypothetical protein MED92_12726 [Oceanospirillum sp. MED92]
 gi|89082295|gb|EAR61518.1| hypothetical protein MED92_12726 [Oceanospirillum sp. MED92]
          Length = 164

 Score = 50.2 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 23/164 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----SPEALKL 62
           M  I  D+E +GL S++   IE+  +      +T       + P+  +N       A ++
Sbjct: 1   MELICIDLEASGLGSQS-YPIEVAWI----NDETGEKDSFLINPDTAENWQYWDDHAEEM 55

Query: 63  HGITD-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           HGI   + +K             +    +    I+   +FD  +++         P    
Sbjct: 56  HGIDRGDLVKKGLDIKQACKRLNE--KLKGKTLISDAFEFDWFWVSRLFDATGMTPSFKM 113

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
             ++ +    +           L K      +   +H AL D  
Sbjct: 114 AGLERVLSKEQVIQFG-----FLAK------AQFRRHRALQDVE 146


>gi|217970407|ref|YP_002355641.1| oligoribonuclease [Thauera sp. MZ1T]
 gi|217507734|gb|ACK54745.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
          Length = 182

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 61/179 (34%), Gaps = 33/179 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL- 60
           + ++    I  D+E TGL+   DRIIEI  V   +  +          P    + P+++ 
Sbjct: 1   MAQDPKTLIWLDMEMTGLEPDRDRIIEIAIVLTDEALEVIAE-----APVIAVHQPDSVL 55

Query: 61  --------KLHGIT--DEFLK-----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
                     HG +     ++     +  + + + +        + +    ++   D  F
Sbjct: 56  DGMDEWNRNTHGKSGLTARVRASTMSEADAEAQVLAFLRAHVPARTSPMCGNSVCQDRRF 115

Query: 106 INAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   +  +       +  + TL  +ARR  P             G+  +    H AL D
Sbjct: 116 LARWMPELEAWFHYRNLDVSTLKELARRWRPE---------IYAGVKKAG--SHTALAD 163


>gi|302416745|ref|XP_003006204.1| asparagine-rich protein [Verticillium albo-atrum VaMs.102]
 gi|261355620|gb|EEY18048.1| asparagine-rich protein [Verticillium albo-atrum VaMs.102]
          Length = 311

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 86/267 (32%), Gaps = 51/267 (19%)

Query: 3   RKNKMRKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRK 54
           + N  R +V  + TT    G+    D   +IE+G +  +     +  R     + P    
Sbjct: 9   QLNIDRYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDAKSLEEIVRD-SALVKPINTP 67

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            +P    L  +T E +++  +F    + F  F NE      + N  F    ++A   R+ 
Sbjct: 68  ITPLCTSLTTLTWEHVRNAGTFRDAVNRFDAFANEH---LTSQNLDFVFVTLDAWDLRVQ 124

Query: 115 K------------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGI----- 150
                          L  SR  D  +  +R         P   + L+++C    +     
Sbjct: 125 LPREARDKAVVLPPYLQHSRTFDLRTEYQRWQQHHPESLPFGPSMLSNICAALEVEPVQS 184

Query: 151 --TISHR-SKH----------GALLDSHLLSDVYIKMMVGGSQINFG--FKTNEDRFFKE 195
              I H    H           A+ ++  L+ V   ++      +      T       +
Sbjct: 185 SAPIKHNLPFHLQALAPASPRRAMEEAVTLARVLRGLIRKSQPAHEHPDVLTRPMDARAD 244

Query: 196 EKKTVPNISLLKRDKPLFTRITKEELD 222
            +  +   S +     L    T+ EL+
Sbjct: 245 VRAFLSERSKVLHMSGLPHDTTQSELE 271


>gi|145514788|ref|XP_001443299.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124410677|emb|CAK75902.1| unnamed protein product [Paramecium tetraurelia]
          Length = 439

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 44/122 (36%), Gaps = 5/122 (4%)

Query: 25  RIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDEFLKDKPSFSSIFSE 82
            IIEI A V  +D  K  R FQ ++ P       E   K  GI    + +  S     ++
Sbjct: 265 EIIEISAKVYDIDQRKIVRNFQKYIKPVDNPIISEFCTKQTGIKQFQINNGISLQQAINQ 324

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN 142
             D F E     I     FD+  +  E QR N   +   R        ++  P S     
Sbjct: 325 LTDIFKELGRFCIITKGDFDLLILKKEAQRKNIKLV---RNFTYYINIKKVFPKSLRSKT 381

Query: 143 SL 144
           SL
Sbjct: 382 SL 383


>gi|328774277|gb|EGF84314.1| hypothetical protein BATDEDRAFT_9096 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 188

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 62/179 (34%), Gaps = 28/179 (15%)

Query: 1   MIRKNKMRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE- 58
           M   N  + +V  D+E TGLD + D IIEI  +         +     +    +    + 
Sbjct: 1   MSTINLFKPLVWIDLEMTGLDLERDVIIEIACIITDGNLNAVQERYDLVLHQPKSVMDQM 60

Query: 59  ---ALKLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFIN 107
               ++ H   G+T + ++   +     +   DF       ++      ++   D  F++
Sbjct: 61  NDWCIQTHGESGLTKQVIESTLTLKDAEATILDFVKRHIPKQREGVLAGNSVHVDRQFLH 120

Query: 108 AELQRINKDPLDPSRIIDTL---SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  +  D L   RI+D      I  R +P            Y      +  H A+ D
Sbjct: 121 KHMPLL-IDHLH-YRIVDVSSIKEIGMRWYP----------DFYKKAPKKKLAHRAMGD 167


>gi|260943085|ref|XP_002615841.1| hypothetical protein CLUG_04723 [Clavispora lusitaniae ATCC 42720]
 gi|238851131|gb|EEQ40595.1| hypothetical protein CLUG_04723 [Clavispora lusitaniae ATCC 42720]
          Length = 255

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 59/174 (33%), Gaps = 14/174 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +K+  + I  D E  G+   N   +   ++           F   + P+ R        +
Sbjct: 87  KKSPGKYIAMDCEFVGVGVDNRSALARVSIVNFYGVIILDEF---VKPSERVTDWR-TWV 142

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G++ + +    SF        D   ++    + H    D+  +     R          
Sbjct: 143 SGVSPKDMNKAISFEEAQKRVADLLKDR--ILVGHAIHNDLKALGLSHARSATRDTARFS 200

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMM 175
           +      A+ K P+    L+ L  +Y  + I H  +H ++ D+ +   ++   M
Sbjct: 201 VFR--KQAKTKFPA----LSKLTSQYLNLQI-HSGQHSSVEDAQVTMALFRSFM 247


>gi|73951438|ref|XP_545847.2| PREDICTED: similar to Interferon-stimulated gene 20 kDa protein
           (Promyelocytic leukemia nuclear body-associated protein
           ISG20) (Estrogen regulated transcript 45 protein) [Canis
           familiaris]
          Length = 171

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 11/164 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E  G+     R   +    L+D   T   +  F+ P G        ++ GIT   
Sbjct: 8   VAIDCEMVGVGPS--RKSGLARCSLVDLHGTV-LYDKFIRPEGEITDYR-TQVSGITPRH 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++    F+    E       +    + H+ K D   +   +           R    L  
Sbjct: 64  MEQATPFAVARLEILQLL--EGKLVVGHDLKHDFQALKENMSNYAIYDTSTDR---LLWR 118

Query: 130 ARRKHPSSRNDLNSLCKR-YGITISH-RSKHGALLDSHLLSDVY 171
                   R  L  L +R  G  I + R  H ++ D+    ++Y
Sbjct: 119 EANLQNCRRVSLRVLSERLLGRRIQNSRFGHSSVEDAKAAMELY 162


>gi|67923259|ref|ZP_00516744.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
 gi|67854885|gb|EAM50159.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
          Length = 970

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 49/141 (34%), Gaps = 29/141 (20%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + +D ETT L+ +   ++ IG                   P      P A K       
Sbjct: 381 PVAWDTETTALNPREAELVGIGCCWGN-------------KPTDIAYIPIAHK------- 420

Query: 69  FLKDKPSFSS-IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + K      +F          N   +  N KFD   +  + Q IN D      ++DT+
Sbjct: 421 --QGKQLRKEQVFDRLQSILESNNYPKVFQNTKFDR--LIFKHQGINLD----GVVLDTM 472

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
             +   HP   + L+ LC++Y
Sbjct: 473 LASYVLHPEKSHKLSELCEQY 493


>gi|118784769|ref|XP_313923.3| AGAP005050-PA [Anopheles gambiae str. PEST]
 gi|116128203|gb|EAA09448.4| AGAP005050-PA [Anopheles gambiae str. PEST]
          Length = 223

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 50/165 (30%), Gaps = 14/165 (8%)

Query: 10  IVFDIETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           I  D E  G+  D K   +  +  V        +     ++ P          ++ GI  
Sbjct: 50  IALDCEMVGIGPDGKEHMLARVSIVNEQGDVIVD----CYVKPQETVTDYR-TEISGIRP 104

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +     F +I               + H  K D+  +N +  + N       R I   
Sbjct: 105 EHVNKGVDFKTIRELVRQLI--HGKILVGHALKNDLMVLNLKHPKYNIRDTSRYRPI--- 159

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             A++        L S+   +         H ++ D+     +Y+
Sbjct: 160 --AKKAGSFGTPSLKSIAYVFLREDIQDGSHCSVEDARAAMKIYM 202


>gi|297269235|ref|XP_002799845.1| PREDICTED: oligoribonuclease, mitochondrial-like isoform 2 [Macaca
           mulatta]
          Length = 222

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 31/166 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA---LKL 62
            R +  D+E TGLD + D+IIE+   +   D +       + +          +    + 
Sbjct: 41  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 100

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINKDPL 118
           HG                 EF  F  +Q          ++   D  F++  + +  K   
Sbjct: 101 HG------------KQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLH 148

Query: 119 DPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                + T+  + RR +P          + Y       + H AL D
Sbjct: 149 YRIIDVSTVKELCRRWYP----------EEYEFAPKKAASHRALDD 184


>gi|18375535|ref|NP_338599.1| three prime repair exonuclease 1 isoform b [Homo sapiens]
 gi|12751309|gb|AAK07613.1|AF319566_2 3'-5' exonuclease TREX1 [Homo sapiens]
 gi|12751311|gb|AAK07614.1|AF319567_2 3'-5' exonuclease TREX1 [Homo sapiens]
 gi|12751315|gb|AAK07616.1|AF319569_1 3'-5' exonuclease TREX1 [Homo sapiens]
 gi|17865433|gb|AAD48774.2| 3'-5' exonuclease TREX1 [Homo sapiens]
          Length = 314

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 83/255 (32%), Gaps = 46/255 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAV------------------ELLDYSKTNRTFQVFL 48
              I FD+E TGL     ++ E+  +                   +    +      + +
Sbjct: 12  QTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPPPRVVDKLSLCV 71

Query: 49  CPNGRKNSPEALKLHGITDEFLK--DKPSFSSIFSEFWDFFNE---QNAEWIAHN-AKFD 102
            P G+  SP A ++ G++   L    +  F    +     F     Q    +AHN  ++D
Sbjct: 72  AP-GKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDRYD 130

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGIT 151
              + AEL  +     LD +  +D+++  +            P     L S+  R YG +
Sbjct: 131 FPLLQAELAMLGLTSALDGAFCVDSITALKALERASSPSEHGPRKSYSLGSIYTRLYGQS 190

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                 H A  D   L    + +     Q    +     R F   +     ++   R KP
Sbjct: 191 PPD--SHTAEGDVLAL----LSICQWRPQALLRWVDAHARPFGTIRPMY-GVTASARTKP 243

Query: 212 LFTRITKEELDEHDK 226
             + +T      H  
Sbjct: 244 RPSAVT---TTAHLA 255


>gi|113474408|ref|YP_720469.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
 gi|110165456|gb|ABG49996.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
          Length = 1045

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 51/154 (33%), Gaps = 31/154 (20%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +KN    + +D ETT L+ ++  ++ IG     +          ++ P G K      K+
Sbjct: 376 QKNPHIPVAWDTETTSLEPRDAELVGIGCCWGKNMEDV-----AYI-PTGHKTDKNLDKV 429

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                           +               +  N+KFD      +  ++         
Sbjct: 430 T---------------VLESLKPVLESSEYPKVFQNSKFDRLVFRCQGIKL------TGV 468

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY----GITI 152
             DT+  +   +P +++ L  +  RY    GI +
Sbjct: 469 FFDTMLASYVLNPEAKHSLEEIYIRYLRNVGINL 502


>gi|195653125|gb|ACG46030.1| RNA exonuclease 4 [Zea mays]
          Length = 230

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 67/221 (30%), Gaps = 40/221 (18%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
           G D   D    +  V   ++      FQ ++ P     +    ++ GI  E+L+D     
Sbjct: 22  GSDGSMDLCARVCLVGEDEHVI----FQTYVKPT-LPVTNYRYEVTGIRPEYLRDAMPLK 76

Query: 78  SIFSEFWDFFN-------------EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                  +                 +    + H        ++ +L+R+  +      I 
Sbjct: 77  VAQRRIQEILCNGESLWKLRPRSYGRAKVLVGHG-------LDHDLERLGLEY-PAFMIR 128

Query: 125 DTLSIARRKHPSS-RNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           DT         S   N L  L + Y G  I H        D      +YI+M     Q +
Sbjct: 129 DTAKYPPLMKTSKLSNSLKYLTQAYLGYDI-HTGIQDPYEDCVAAMRLYIRMRSQAHQRD 187

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           +   + E            N     R + L  R++ EEL  
Sbjct: 188 YNSGSGE----------AQNNYPAWRQREL-DRMSPEELLA 217


>gi|171057672|ref|YP_001790021.1| oligoribonuclease [Leptothrix cholodnii SP-6]
 gi|170775117|gb|ACB33256.1| Exonuclease RNase T and DNA polymerase III [Leptothrix cholodnii
           SP-6]
          Length = 187

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 59/190 (31%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N +  I  D+E TGLD   DR+IEI  V   D   T R                 + 
Sbjct: 7   LPRNDLNLIWIDMEMTGLDPMTDRVIEIAVVVT-DAQLTVR------------VEGPVIA 53

Query: 62  LH--------------------GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAH 97
           +H                    G+T+              +  +F  +    + +    +
Sbjct: 54  VHQSDEVLDRMDAWNRGTHGKSGLTERVKASTIGEDQAQDQMIEFLKQYVSKKTSPMCGN 113

Query: 98  NAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----S 153
           +   D  F+   + R+  +     R +D             + L  L +R+   I     
Sbjct: 114 SICQDRRFMANYMPRL--EEFFHYRNLDV------------STLKELARRWKPEIMDGFK 159

Query: 154 HRSKHGALLD 163
              KH AL D
Sbjct: 160 KHQKHTALAD 169


>gi|300692079|ref|YP_003753074.1| oligoribonuclease [Ralstonia solanacearum PSI07]
 gi|299079139|emb|CBJ51807.1| oligoribonuclease [Ralstonia solanacearum PSI07]
          Length = 219

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 29/175 (16%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+    +  D+E TGL  +NDRIIE+  V             V +     +        +
Sbjct: 25  KSDNNLVWLDMEMTGLSPENDRIIEVAVVVTDSELNVLAEGPVLVIHQPDEILDGMDAWN 84

Query: 64  -------GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAELQR 112
                  G+ D+      + +   ++  DF      +  +    ++   D  F+   + +
Sbjct: 85  KGTHGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPK 144

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           +  +     R +D             + L  LCKR+   ++     R +H A  D
Sbjct: 145 L--EAYFHYRNLDV------------STLKELCKRWQPAVAKGFIKRQQHTAYAD 185


>gi|282901618|ref|ZP_06309536.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505]
 gi|281193494|gb|EFA68473.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505]
          Length = 988

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 24/156 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            K+    + +D ETT LD +N  ++ IG    +  +        ++ P G          
Sbjct: 382 HKDPQNPVAWDTETTDLDPRNANLVGIGCCWGMGENDV-----AYI-PLG---------- 425

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H IT   L+     +++ S        ++      NAKFD      +   ++    DP  
Sbjct: 426 HNITTN-LEKNLQLNTVLSTLDKILASRDYPKTFQNAKFDRLIFKYQGVTLDGVIFDP-- 482

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSK 157
               +  +   +P   ++L  L  RY G+ ++    
Sbjct: 483 ----MLASYLLNPDHTHNLTDLALRYLGLQLTEYDH 514


>gi|119713448|gb|ABL97509.1| DNA polymerase A [uncultured marine bacterium HOT0_02H05]
          Length = 970

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 29/141 (20%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + +D ETT L+ +   ++ IG                   P      P A K       
Sbjct: 381 PVAWDTETTALNPREAELVGIGCCWGN-------------KPTDIAYIPIAHK------- 420

Query: 69  FLKDKPSFSS-IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + K      +           N   +  N KFD   +  + Q IN D      ++DT+
Sbjct: 421 --QGKQLRKEQVLDRLQSILESNNYPKVFQNTKFDR--LIFKHQGINLD----GVVLDTM 472

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
             +   HP   + L+ LC++Y
Sbjct: 473 LASYVLHPEKSHKLSELCEQY 493


>gi|86156636|ref|YP_463421.1| hypothetical protein Adeh_0207 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773147|gb|ABC79984.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 172

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 69/184 (37%), Gaps = 20/184 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E  G       ++  GAV +      +RTF+  + P      PEAL + G+T
Sbjct: 1   MSAYVVDVEADGPIPGKYSMVSFGAVRVEPGL--SRTFRGEVRPISDLWLPEALAISGVT 58

Query: 67  DE-FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQ-RINKDPLDPS 121
            E  L+       + ++F  +  E         + N  FD  ++N      + ++P   S
Sbjct: 59  REQHLRFGEP-GEVMADFERWIQETTRGKPVLFSDNLSFDWQYVNWYFHTYLGRNPFGWS 117

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             RI D      +   +    L +              H  + D+   + V ++++  G 
Sbjct: 118 GRRIGDLYCGMVKDGHAQWKHLRATA----------HDHDPVNDAKANAGVLLQLVDMGL 167

Query: 180 QINF 183
           ++N 
Sbjct: 168 KLNL 171


>gi|158284333|ref|XP_561529.3| Anopheles gambiae str. PEST AGAP012826-PA [Anopheles gambiae str.
           PEST]
 gi|157021140|gb|EAL42430.3| AGAP012826-PA [Anopheles gambiae str. PEST]
          Length = 207

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 50/165 (30%), Gaps = 14/165 (8%)

Query: 10  IVFDIETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           I  D E  G+  D K   +  +  V        +     ++ P          ++ GI  
Sbjct: 34  IALDCEMVGIGPDGKEHMLARVSIVNEQGDVIVD----CYVKPQETVTDYR-TEISGIRP 88

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +     F +I               + H  K D+  +N +  + N       R I   
Sbjct: 89  EHVNKGVDFKTIRELVRQLI--HGKILVGHALKNDLMVLNLKHPKYNIRDTSRYRPI--- 143

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             A++        L S+   +         H ++ D+     +Y+
Sbjct: 144 --AKKAGSFGTPSLKSIAYVFLREDIQDGSHCSVEDARAAMKIYM 186


>gi|297690291|ref|XP_002822553.1| PREDICTED: oligoribonuclease, mitochondrial-like isoform 2 [Pongo
           abelii]
          Length = 222

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 31/166 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA---LKL 62
            R +  D+E TGLD + D+IIE+   +   D +       + +          +    + 
Sbjct: 41  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 100

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINKDPL 118
           HG                 EF  F  +Q          ++   D  F++  + +  K   
Sbjct: 101 HG------------KQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLH 148

Query: 119 DPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                + T+  + RR +P          + Y       + H AL D
Sbjct: 149 YRIIDVSTVKELCRRWYP----------EEYEFAPKKAASHRALDD 184


>gi|290963155|ref|YP_003494337.1| hypothetical protein SCAB_88781 [Streptomyces scabiei 87.22]
 gi|260652681|emb|CBG75814.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 195

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 23/170 (13%)

Query: 11  VFDIETT---GLDSKN--DRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           V D+E T   G       + IIEIG   V++    + +R  ++ + P     S    +L 
Sbjct: 10  VIDVEATCWDGQPPPGSVNEIIEIGLTVVDVSAGRRVSRH-RLLVRPVRSTVSDFCTELT 68

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G+T   ++   +F+       + +      W +   ++D      + Q            
Sbjct: 69  GLTQAEVEQGVTFAEACRILVEEYEAGERPWASW-GEYDRRQFARQSQADAVAYPFGHPT 127

Query: 124 IDTLSIARRKH---------PSSRNDLNSLCKRYGITISHRSKHGALLDS 164
             T + A+            P   + L    +  G+ +  R  H    D+
Sbjct: 128 ERTHTNAKAVFTEAYGLRRKPGMAHAL----QIAGLPLEGR-HHRGEDDA 172


>gi|73961543|ref|XP_547530.2| PREDICTED: similar to interferon stimulated exonuclease gene
           20-like 2 [Canis familiaris]
          Length = 348

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 62/195 (31%), Gaps = 19/195 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            +K   + +  D E  G   K   +  +    +++Y   +  +  ++ P          +
Sbjct: 167 TQKTPKKMVAIDCEMVGTGPKGH-VSSLARCSIVNYHG-DVLYDEYILPPCHIVDYR-TR 223

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
             GI  + + +   F     +            + H    D   +          P   +
Sbjct: 224 WSGIRKQHMVNATPFKVARGQILKIL--TGKIVVGHAIHNDFKALQYFH------PKSLT 275

Query: 122 RIIDTLSIARRKHPSSRN---DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMM 175
           R    +    RK     N    L SL K+     I +  +S H ++ D+    ++Y K++
Sbjct: 276 RDTSHIPPLNRKADCPENATMSLKSLTKKLLNRDIQV-GKSGHSSVEDAQATMELY-KLV 333

Query: 176 VGGSQINFGFKTNED 190
               + +      +D
Sbjct: 334 EVEWEQHLAQNPPKD 348


>gi|148927126|ref|ZP_01810755.1| oligoribonuclease [candidate division TM7 genomosp. GTL1]
 gi|147887420|gb|EDK72865.1| oligoribonuclease [candidate division TM7 genomosp. GTL1]
          Length = 184

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 65/185 (35%), Gaps = 42/185 (22%)

Query: 1   MIRKNKMR----KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN- 55
           M  K  M+     +  D+E TGLD + DR++E+ A+       T+  F+         + 
Sbjct: 1   MTHKADMKKHAKLLWLDLEMTGLDPQRDRVLEVAAIA------TDWNFEEMAVIESVVHQ 54

Query: 56  SPEALKL--------H---GITDEFLKDKP----SFSSIFSEFWDFFNEQNAEWI--AHN 98
           SP+ L L        H   G+T E ++           I  +F D   +     +   ++
Sbjct: 55  SPKVLDLMDDWVRSQHASSGLT-ERVRASDVSETDAEDILLQFIDSVYKDGDPVVLAGNS 113

Query: 99  AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
              D  FI    QR+  D     R++D +S  +                Y         H
Sbjct: 114 IHQDRRFIRQYWQRL--DARLHYRMLD-VSAWKVVFEGK----------YQKRFPKPEDH 160

Query: 159 GALLD 163
            AL D
Sbjct: 161 RALED 165


>gi|302848573|ref|XP_002955818.1| hypothetical protein VOLCADRAFT_66302 [Volvox carteri f.
           nagariensis]
 gi|300258786|gb|EFJ43019.1| hypothetical protein VOLCADRAFT_66302 [Volvox carteri f.
           nagariensis]
          Length = 196

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 57/179 (31%), Gaps = 52/179 (29%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH-------- 63
            D+E TGLD + D IIE+  +      K        L P        A  +H        
Sbjct: 22  VDLEMTGLDIERDTIIEVACIITDGDLK-----HEVLGP--------ATAIHADDDVLDN 68

Query: 64  ------------GITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFIN 107
                       G+T    +   + +    E   F +       A+   ++   D  F+ 
Sbjct: 69  MNAWCKEHHGKSGLTQRVRETHVTMAQAEDELLAFISGHTTENMAQLAGNSIHVDRMFLL 128

Query: 108 AELQRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             + R+        RI+D  SI   ARR +P          K Y      +  H AL D
Sbjct: 129 KYMPRV--VAYLNYRIVDVSSIKELARRWYP----------KAYKNAPRKKLAHTALSD 175


>gi|150866853|ref|XP_001386583.2| hypothetical protein PICST_33961 [Scheffersomyces stipitis CBS
           6054]
 gi|149388109|gb|ABN68554.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 283

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 27/225 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN------RTFQVFLC-----PNGRKNSPE 58
           +  D+E    +    ++ EIG V               + + + +       NGR    +
Sbjct: 69  VSIDVEA--YERSLGKVTEIGVVIYDPQVSPGSAVPLLKPYHIIIQENLKLVNGRYVPDK 126

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             +  G T   L+ K +   + +    + N +N   + H+ + DV ++ +    I  +  
Sbjct: 127 KDRFMGGTSHVLRKKDAEMFVSAVIEKYINGRNGVLVGHHIEGDVKWLRS----IGVNIK 182

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVG 177
           + + ++DT     R    SR+   +L      I + H + H A  D++    +   M   
Sbjct: 183 NDTAVVDTF----RLFAISRSSGGTLRGVLREINVPHGNLHNAANDAYYT--LIAAMT-- 234

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISL-LKRDKPLFTRITKEEL 221
               +   + N D+F   EKK+  +  + L  D+  F + T EEL
Sbjct: 235 YCDPHHRLEKNLDQFVHMEKKSAVDKKMDLFSDRATFRKTTAEEL 279


>gi|7705353|ref|NP_057465.1| three prime repair exonuclease 1 isoform a [Homo sapiens]
 gi|47606216|sp|Q9NSU2|TREX1_HUMAN RecName: Full=Three prime repair exonuclease 1; AltName: Full=3'-5'
           exonuclease TREX1; AltName: Full=DNase III
 gi|12751313|gb|AAK07615.1|AF319568_1 3'-5' exonuclease TREX1-like protein [Homo sapiens]
 gi|23272145|gb|AAH23630.1| Three prime repair exonuclease 1 [Homo sapiens]
 gi|182888323|gb|AAI60084.1| Three prime repair exonuclease 1 [synthetic construct]
 gi|189054807|dbj|BAG37636.1| unnamed protein product [Homo sapiens]
          Length = 369

 Score = 50.2 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 83/255 (32%), Gaps = 46/255 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAV------------------ELLDYSKTNRTFQVFL 48
              I FD+E TGL     ++ E+  +                   +    +      + +
Sbjct: 67  QTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPPPRVVDKLSLCV 126

Query: 49  CPNGRKNSPEALKLHGITDEFLK--DKPSFSSIFSEFWDFFNE---QNAEWIAHN-AKFD 102
            P G+  SP A ++ G++   L    +  F    +     F     Q    +AHN  ++D
Sbjct: 127 AP-GKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDRYD 185

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGIT 151
              + AEL  +     LD +  +D+++  +            P     L S+  R YG +
Sbjct: 186 FPLLQAELAMLGLTSALDGAFCVDSITALKALERASSPSEHGPRKSYSLGSIYTRLYGQS 245

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                 H A  D   L    + +     Q    +     R F   +     ++   R KP
Sbjct: 246 PPD--SHTAEGDVLAL----LSICQWRPQALLRWVDAHARPFGTIRPMY-GVTASARTKP 298

Query: 212 LFTRITKEELDEHDK 226
             + +T      H  
Sbjct: 299 RPSAVT---TTAHLA 310


>gi|332816811|ref|XP_003309834.1| PREDICTED: three prime repair exonuclease 1-like [Pan troglodytes]
          Length = 369

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 83/255 (32%), Gaps = 46/255 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAV------------------ELLDYSKTNRTFQVFL 48
              I FD+E TGL     ++ E+  +                   +    +      + +
Sbjct: 67  QTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPPPRVVDKLSLCV 126

Query: 49  CPNGRKNSPEALKLHGITDEFLK--DKPSFSSIFSEFWDFFNE---QNAEWIAHN-AKFD 102
            P G+  SP A ++ G++   L    +  F    +     F     Q    +AHN  ++D
Sbjct: 127 AP-GKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDRYD 185

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGIT 151
              + AEL  +     LD +  +D+++  +            P     L S+  R YG +
Sbjct: 186 FPLLQAELAMLGLTSALDGAFCVDSITALKALERASSPSEHGPRKSYSLGSIYTRLYGQS 245

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                 H A  D   L    + +     Q    +     R F   +     ++   R KP
Sbjct: 246 PPD--SHTAEGDVLAL----LSICQWRPQALLRWVDAHARPFGTIRPMY-GVTASARTKP 298

Query: 212 LFTRITKEELDEHDK 226
             + +T      H  
Sbjct: 299 RPSAVT---TTAHLA 310


>gi|253681455|ref|ZP_04862252.1| possible elongation subunit of DNA-dependent DNA polymerase
           [Clostridium botulinum D str. 1873]
 gi|253561167|gb|EES90619.1| possible elongation subunit of DNA-dependent DNA polymerase
           [Clostridium botulinum D str. 1873]
          Length = 265

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 36/173 (20%)

Query: 9   KIVFDIETTGLDSKNDRIIEI--GAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            I FDIETTG D +   +I I  G  +  +     + F             E+L      
Sbjct: 25  IIFFDIETTGFDKEKASVILISGGWFDENNKFIIKQYF------------AESL------ 66

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           DE ++   SF    S+F  + +            FD  FI   +   N D + P   ID 
Sbjct: 67  DEEVQLLESFKKDISKFHTWCSYNG-------KAFDEPFIKKRMDINNIDFIPPQNHIDL 119

Query: 127 LSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             + R  +      R +L S+ K  GI    +      +D  +  ++Y + ++
Sbjct: 120 YRLIRPYYKQLGIERCNLKSVEKYLGIDRQDQ------IDGGVCVELYYEFLM 166


>gi|207743707|ref|YP_002260099.1| oligoribonuclease protein [Ralstonia solanacearum IPO1609]
 gi|206595106|emb|CAQ62033.1| oligoribonuclease protein [Ralstonia solanacearum IPO1609]
          Length = 219

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 29/175 (16%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+    +  D+E TGL  +NDRIIE+  V             V +     +        +
Sbjct: 25  KSDNNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQSDEILDGMDAWN 84

Query: 64  -------GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAELQR 112
                  G+ D+      + +   ++  DF      +  +    ++   D  F+   + +
Sbjct: 85  KGTHGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPK 144

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           +  +     R +D             + L  LCKR+   I+     R +H A  D
Sbjct: 145 L--EAYFHYRNLDV------------STLKELCKRWQPAIAKGFIKRQQHTAYAD 185


>gi|154482802|ref|ZP_02025250.1| hypothetical protein EUBVEN_00479 [Eubacterium ventriosum ATCC
           27560]
 gi|149736397|gb|EDM52283.1| hypothetical protein EUBVEN_00479 [Eubacterium ventriosum ATCC
           27560]
          Length = 116

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 17/114 (14%)

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++  F        D  ++ +   IA+NA F+  ++ A         +DP + ID + 
Sbjct: 1   MVANELPFERYVPTVLDILSKADKV-IAYNAAFEDSYLKAY-----GIEVDPEKWIDPMI 54

Query: 129 IARRKHPS--------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +    +              L      YG        H +L D       Y KM
Sbjct: 55  MFAEIYGEWNERRGSYKWQSLTKCATYYGYEF---KAHDSLEDVKATLYCYKKM 105


>gi|281341781|gb|EFB17365.1| hypothetical protein PANDA_008241 [Ailuropoda melanoleuca]
          Length = 303

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 53/168 (31%), Gaps = 16/168 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   +  R+ E+    ++ Y   +  +  ++ P          +  GIT 
Sbjct: 109 KCVAIDCEMVGTGPRG-RVSELARCSVVSYHG-DVLYDKYIRPE-MPIVDYRTRWSGITR 165

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++    F     E       +    + H        ++ + Q +            T 
Sbjct: 166 QHMRKAIPFQVAQKEILKLL--KGKVVVGH-------ALHNDFQALKYVHPRSQTRDTTY 216

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRS----KHGALLDSHLLSDVY 171
             +    P       +  K   + + H+     +HG + D+    ++Y
Sbjct: 217 VPSLLHQPGLPTRARASLKDLALQLLHKKIQAGQHGQVEDAVTAMELY 264


>gi|124004714|ref|ZP_01689558.1| DNA polymerase I [Microscilla marina ATCC 23134]
 gi|123989837|gb|EAY29366.1| DNA polymerase I [Microscilla marina ATCC 23134]
          Length = 955

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETT L +++  ++ I               + +  P               T    K
Sbjct: 367 FDTETTSLVAQDAELVGIAFATYAG--------EAYYVP---------------TPADQK 403

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           +     +I  EF + F +++   IA N K+D   +    +    +P    +  DT+    
Sbjct: 404 EA---QAIVDEFKEVFEDESIGKIAQNLKYDWVVL----KNYGIEP--KGKFFDTMLAHY 454

Query: 132 RKHPSSRNDLNSLCKRY 148
              P  R++++ L K Y
Sbjct: 455 LLQPDMRHNMDVLAKSY 471


>gi|308806878|ref|XP_003080750.1| exonuclease family protein (ISS) [Ostreococcus tauri]
 gi|116059211|emb|CAL54918.1| exonuclease family protein (ISS) [Ostreococcus tauri]
          Length = 793

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 56/168 (33%), Gaps = 21/168 (12%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D E    D     ++ +  V+              + P G+    +  ++ G+ +
Sbjct: 195 RLLGIDCEMCETDRDARALVGVSVVDESGKVLLK----TLVKPPGKIVDMKK-EITGLEE 249

Query: 68  EFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           + + +   +   +               + H+  +D+  +           +D   +IDT
Sbjct: 250 KDVLNAKKTLEDVQEAIVKLCKP-GTVLVGHSLVYDLKALK----------IDHQPVIDT 298

Query: 127 LSIARRKHPSSRN-DLNSLCKRY---GITISHRSKHGALLDSHLLSDV 170
             + R  +       L  LC+++    +  +    H ++ D+    D+
Sbjct: 299 ALLFRYSNVRKSTPSLAVLCEKFLDRKLRENAAGFHDSVEDAKAALDL 346


>gi|54696964|gb|AAV38854.1| three prime repair exonuclease 1 [synthetic construct]
          Length = 305

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 83/255 (32%), Gaps = 46/255 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAV------------------ELLDYSKTNRTFQVFL 48
              I FD+E TGL     ++ E+  +                   +    +      + +
Sbjct: 2   QTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPPPRVVDKLSLCV 61

Query: 49  CPNGRKNSPEALKLHGITDEFLK--DKPSFSSIFSEFWDFFNE---QNAEWIAHNA-KFD 102
            P G+  SP A ++ G++   L    +  F    +     F     Q    +AHN  ++D
Sbjct: 62  AP-GKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGYRYD 120

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGIT 151
              + AEL  +     LD +  +D+++  +            P     L S+  R YG +
Sbjct: 121 FPLLQAELAMLGLTSALDGAFCVDSITALKALERASSPSEHGPRKSYSLGSIYTRLYGQS 180

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                 H A  D   L    + +     Q    +     R F   +     ++   R KP
Sbjct: 181 PPD--SHTAEGDVLAL----LSICQWRPQALLRWVDAHARPFGTIRPMY-GVTASARTKP 233

Query: 212 LFTRITKEELDEHDK 226
             + +T      H  
Sbjct: 234 RPSAVT---TTAHLA 245


>gi|297160318|gb|ADI10030.1| oligoribonuclease [Streptomyces bingchenggensis BCW-1]
          Length = 202

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 28/171 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH 63
           R +  D E TGL   +D +IE+ A V   + +       + + P  +  +  PE + ++H
Sbjct: 4   RMVWIDCEMTGLSLSDDALIEVAALVTDSELNILGEGVDIVVRPPAKALTTMPEVVREMH 63

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINK 115
              G+  E L    +      +   +  E       A    ++   D GF+  ++  +  
Sbjct: 64  TASGLLAE-LDGGTTLEDAQRQVLAYIREHVPEAGKAPLCGNSVSTDRGFLLRDMPEL-- 120

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +     RI+D  SI   ARR +           + Y  +      H AL D
Sbjct: 121 ESYLHYRIVDVSSIKELARRWY----------ARAYFNSPKKNGNHRALAD 161


>gi|209523939|ref|ZP_03272491.1| DNA polymerase I [Arthrospira maxima CS-328]
 gi|209495611|gb|EDZ95914.1| DNA polymerase I [Arthrospira maxima CS-328]
          Length = 945

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 27/147 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              N  + + +D ETT L+ ++  ++ IG                        +    + 
Sbjct: 362 THTNPDKPVAWDTETTSLEPRDANLVGIGCCW-----------------GSELSDLAYIP 404

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L+    E L    +   +          +N      NAKFD   + ++   +        
Sbjct: 405 LNHTQGEML----NIEEVLPALRPILESENYPKTLQNAKFDRLILRSQGITLKGVVF--- 457

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY 148
              DT+  +   +P S ++L  L  RY
Sbjct: 458 ---DTMLASYVINPESSHNLTDLSLRY 481


>gi|212721064|ref|NP_001131502.1| hypothetical protein LOC100192839 [Zea mays]
 gi|194691708|gb|ACF79938.1| unknown [Zea mays]
          Length = 249

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 62/172 (36%), Gaps = 26/172 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLD---------YSKTNRTFQVFLCPNGRKNS 56
           +M  +  D+E TGLD   DRI+EI  +                 +++       +    +
Sbjct: 67  RMPLVWIDLEMTGLDITKDRILEIACIITDGKLTKQIEGPDLVISQSKDCLDNMDEWCKT 126

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKF-DVGFINAELQR 112
             A    G+T+  L+ + S     ++  DF  +        +A N+ + D  F+   + +
Sbjct: 127 HHAAS--GLTERVLQSELSEHDAEAKVLDFVRKHINSGTPLLAGNSVYVDFLFLKKYMPQ 184

Query: 113 INKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +          + + +++  R +P  R            T   +  H A+ D
Sbjct: 185 LAAVFSHVIVDVSSIMALCIRWYPKER----------KQTPRKQKTHRAMDD 226


>gi|145641395|ref|ZP_01796974.1| exodeoxyribonuclease I [Haemophilus influenzae R3021]
 gi|145273938|gb|EDK13805.1| exodeoxyribonuclease I [Haemophilus influenzae 22.4-21]
          Length = 430

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 23/132 (17%)

Query: 57  PEALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRIN 114
           PEA+ + GI  +   +K  S     ++    F++ N   + +N  ++D         R  
Sbjct: 14  PEAVMITGIMPQECNEKGLSEPEFAAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNF 73

Query: 115 KDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHR 155
            DP + S          +D +       P                L  L K  GI   H 
Sbjct: 74  IDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIE--HE 131

Query: 156 SKHGALLDSHLL 167
           + H A+ D +  
Sbjct: 132 NAHDAMADVYAT 143


>gi|332215859|ref|XP_003257060.1| PREDICTED: three prime repair exonuclease 1-like [Nomascus
           leucogenys]
          Length = 314

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 82/255 (32%), Gaps = 46/255 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAV------------------ELLDYSKTNRTFQVFL 48
              I FD+E TGL     ++ E+  +                   +    +      + +
Sbjct: 12  QTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPLPPRVVDKLSLCV 71

Query: 49  CPNGRKNSPEALKLHGITDEFLK--DKPSFSSIFSEFWDFFNE---QNAEWIAHN-AKFD 102
            P G+  SP A ++ G++   L    +  F    +     F     Q    +AHN  ++D
Sbjct: 72  AP-GKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDRYD 130

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGIT 151
              + AEL  +     LD +  +D+++  +            P     L S+  R YG +
Sbjct: 131 FPLLQAELAMLGLTSALDGAFCVDSITALKALERASSPSEHGPRKSYSLGSIYTRLYGQS 190

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                 H A  D   L    + +     Q    +     R F   +     ++   R KP
Sbjct: 191 PPD--SHTAEGDVLAL----LSICQWRPQALLRWVDAHARPFGTIRPMY-GVTASARTKP 243

Query: 212 LFTRITKEELDEHDK 226
               +T      H  
Sbjct: 244 RPAAVT---TTAHLA 255


>gi|225021633|ref|ZP_03710825.1| hypothetical protein CORMATOL_01658 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945624|gb|EEG26833.1| hypothetical protein CORMATOL_01658 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 209

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 58/177 (32%), Gaps = 24/177 (13%)

Query: 1   MIRKNK-MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCP---NGRKN 55
           M   +K  R +  D+E TGLD     I+E+ A +   D +       V +       R+ 
Sbjct: 1   MADMDKHDRIVWIDLEMTGLDIHEHTIVEVAALITDADLNVLGEGVDVVVHASEEELRRM 60

Query: 56  SPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFIN 107
           +     +H   G+  E  +   +         +        E  A    ++   D GFI 
Sbjct: 61  NEFVTNMHESSGLLAEIQESTVTLKEAEDAVLELIAKHCDSEHPAPLAGNSIGTDRGFIR 120

Query: 108 AELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             + R+++        + T+  +ARR  P                      H AL D
Sbjct: 121 EYMPRLDEALHYRMIDVSTVKELARRWAPRVYYH----------QPEKDMSHRALAD 167


>gi|126273834|ref|XP_001370628.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 334

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 60/182 (32%), Gaps = 24/182 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G      R+ E+    ++ Y   +  +  ++ P          +  GIT 
Sbjct: 128 KCVAIDCEMVGTGP-GGRVSELARCSVVSYHG-DVLYDKYIRPET-PIVDYRTRWSGITR 184

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +++   F     E       +    + H    D   +     R         +  DTL
Sbjct: 185 QHMQNAIPFRVAQKEILKLL--KGKLVVGHALHNDFRALKYFHPR--------RQTRDTL 234

Query: 128 SIARRK----HP--SSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           S+         P  +  + L +L  +     I +     H ++ D+    ++Y +++   
Sbjct: 235 SVPSLINQTGFPVRAQSSSLKNLALQLLNKRIQVGQHG-HSSVEDATTAMELY-RLVEAQ 292

Query: 179 SQ 180
            +
Sbjct: 293 WE 294


>gi|322815443|gb|EFZ24097.1| phosphotransferase, putative [Trypanosoma cruzi]
          Length = 579

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 65/197 (32%), Gaps = 24/197 (12%)

Query: 9   KIVFDIETTGLDSKN---DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D E T   ++      IIE   V +   S +    FQ ++ P      S    +L 
Sbjct: 99  YVVLDFEATCERNRRLEEPEIIEFPMVLIDARSHRILTEFQRYVRPVVNPILSDFCTELT 158

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQN--------AEWIAHNAKFDVG-FINAELQRIN 114
           GI    +    +F  +F    +F             +        +D+   + ++L+   
Sbjct: 159 GIKQSVVDAAETFPLVFDAALEFLRGSGYGEAPPLRSYLFVTCGDWDLKTMLPSQLRTTE 218

Query: 115 KD------PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSH 165
           K       P    R  +     R   P+    +  + +     G+ +  R  H  + D  
Sbjct: 219 KTGTAIVAPPTFRRWCNLKVPMRAIVPTKARGMFDMREMLAAVGLPLKGR-HHSGIDDCR 277

Query: 166 LLSDVYIKMMVGGSQIN 182
            ++ V  +++  G  I 
Sbjct: 278 NIASVVQELLRRGHVIA 294


>gi|166712351|ref|ZP_02243558.1| oligoribonuclease [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 194

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 31/174 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDY---------------SKTNRTFQVFLCPNG 52
           R I  D+E TGLD+  D IIEI  +                     +T      +   N 
Sbjct: 10  RLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLETLEAMDEW-NRNQ 68

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            + S    ++    D  +    + +   +   ++     +    ++   D  F++ ++ R
Sbjct: 69  HRRSGLWQRV---LDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSR 125

Query: 113 INKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           + +     +  + T+  +ARR  P+  N             +  S H AL D  
Sbjct: 126 LERYFHYRNLDVSTIKELARRWAPTLANG-----------FAKSSAHTALSDVR 168


>gi|197098490|ref|NP_001124869.1| apoptosis-enhancing nuclease [Pongo abelii]
 gi|75070936|sp|Q5REE2|AEN_PONAB RecName: Full=Apoptosis-enhancing nuclease; AltName:
           Full=Interferon-stimulated 20 kDa exonuclease-like 1
 gi|55726183|emb|CAH89865.1| hypothetical protein [Pongo abelii]
          Length = 325

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 52/176 (29%), Gaps = 13/176 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   +  R+ E+    ++ Y   +  +  ++ P          +  GIT 
Sbjct: 109 KCVAIDCEMVGTGPRG-RVSELARCSIVSYHG-DVLYDKYIRPE-MPIVDYRTRWSGITR 165

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +     F     E       +    + H    D   +     R               
Sbjct: 166 QHMCKAIPFQVAQKEILKLL--KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNF--- 220

Query: 128 SIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                 H  +R  L  L  +     I +     H ++ D+    ++Y +++    +
Sbjct: 221 LSEPSLHIRARVSLKDLALQLLHKKIQVGQHG-HSSVEDATTAMELY-RLVEVQWE 274


>gi|289665843|ref|ZP_06487424.1| oligoribonuclease [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289669068|ref|ZP_06490143.1| oligoribonuclease [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 194

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 31/174 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDY---------------SKTNRTFQVFLCPNG 52
           R I  D+E TGLD+  D IIEI  +                     +T      +   N 
Sbjct: 10  RLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLETLEAMDEW-NRNQ 68

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            + S    ++    D  +    + +   +   ++     +    ++   D  F++ ++ R
Sbjct: 69  HRRSGLWQRV---LDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMPR 125

Query: 113 INKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           + +     +  + T+  +ARR  P+  N             +  S H AL D  
Sbjct: 126 LERYFHYRNLDVSTIKELARRWAPTVANG-----------FAKSSAHTALSDVR 168


>gi|38344589|emb|CAD40497.2| OSJNBa0079M09.9 [Oryza sativa Japonica Group]
 gi|116308941|emb|CAH66068.1| OSIGBa0092O07.3 [Oryza sativa Indica Group]
 gi|116309117|emb|CAH66222.1| OSIGBa0157N01.8 [Oryza sativa Indica Group]
          Length = 249

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 24/165 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCP--NGRKNSPEALKLHG--- 64
            D+E TGLD   DRI+EI  +   D   T R     + +        +  E  K+H    
Sbjct: 74  IDLEMTGLDITKDRILEIACIIT-DGKLTKRIEGPDLVIRQSKECVNDMNEWCKVHHSAS 132

Query: 65  -----ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
                +    + +  +   +      +          ++   D+ F+   +  +      
Sbjct: 133 GLKEKVLQSDISENDAEKQVLDFIRKYIGSATPLIAGNSVYMDLLFLKKYMPHLAAIFSH 192

Query: 120 PSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
               + ++ ++  R  P  R                   H A+ D
Sbjct: 193 VIVDVSSISALCSRWFPKERKH----------APRKEKNHRAMDD 227


>gi|301768363|ref|XP_002919609.1| PREDICTED: apoptosis-enhancing nuclease-like [Ailuropoda
           melanoleuca]
          Length = 320

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 53/168 (31%), Gaps = 16/168 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   +  R+ E+    ++ Y   +  +  ++ P          +  GIT 
Sbjct: 109 KCVAIDCEMVGTGPRG-RVSELARCSVVSYHG-DVLYDKYIRPE-MPIVDYRTRWSGITR 165

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++    F     E       +    + H        ++ + Q +            T 
Sbjct: 166 QHMRKAIPFQVAQKEILKLL--KGKVVVGH-------ALHNDFQALKYVHPRSQTRDTTY 216

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRS----KHGALLDSHLLSDVY 171
             +    P       +  K   + + H+     +HG + D+    ++Y
Sbjct: 217 VPSLLHQPGLPTRARASLKDLALQLLHKKIQAGQHGQVEDAVTAMELY 264


>gi|85058292|ref|YP_453994.1| oligoribonuclease [Sodalis glossinidius str. 'morsitans']
 gi|123520179|sp|Q2NW86|ORN_SODGM RecName: Full=Oligoribonuclease
 gi|84778812|dbj|BAE73589.1| putative oligoribonuclease [Sodalis glossinidius str. 'morsitans']
          Length = 181

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 31/178 (17%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQV-----FLCP 50
           +  N    I  D+E TGLD + DRIIEI  +                 +Q       +  
Sbjct: 1   MPVNDNNLIWIDLEMTGLDPERDRIIEIATLVTDANLAILAEGPVLAIYQSDAQLALMND 60

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFI 106
              +    +    G+ D   +      +  ++   F  +      +    ++   D  F+
Sbjct: 61  WNVRTHTAS----GLVDRVRQSALDEEAAVAQTLAFLADWVPAGKSPICGNSIGQDRRFL 116

Query: 107 NAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              +  +          + TL  +ARR  P   + L              + H AL D
Sbjct: 117 FRYMPALEAYFHYRYLDVSTLKELARRWKPEILSGLKK-----------NNTHQALDD 163


>gi|261334507|emb|CBH17501.1| phosphotransferase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 540

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 39/206 (18%)

Query: 9   KIVFDIETTGLDSKN---DRIIE--IGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKL 62
            +V D E T    +      +IE  I  V+  + +  +  FQ ++ P      S    +L
Sbjct: 34  YMVLDFEATCERHQRLEVPEVIEFPIVLVDARNGNTISE-FQQYVRPVVNPQLSEFCTEL 92

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD------ 116
            GIT   +    +F  +F+   ++ ++ N        + +  ++       +        
Sbjct: 93  TGITQSVVDRASTFPDVFTAAMNYLHQNNCG----ETEINKRYLPVTCGDWDLKTMLPIQ 148

Query: 117 -------------PLDPSRIIDT-LSIARRKHPS-------SRNDLNSLCKRYGITISHR 155
                        P    R  +    + R   P          +DL  +    G+ +  R
Sbjct: 149 VKACIQQGFTVNVPPSLRRWFNIKQYMQRVLSPGLGQTVSQPIHDLPDMMSVLGLEMKGR 208

Query: 156 SKHGALLDSHLLSDVYIKMMVGGSQI 181
             H  + D   ++ V  +++  G  I
Sbjct: 209 -HHSGIDDCRNIAAVLCELIKLGHVI 233


>gi|21242783|ref|NP_642365.1| oligoribonuclease [Xanthomonas axonopodis pv. citri str. 306]
 gi|23821917|sp|Q8PKW8|ORN_XANAC RecName: Full=Oligoribonuclease
 gi|21108265|gb|AAM36901.1| oligoribonuclease [Xanthomonas axonopodis pv. citri str. 306]
          Length = 194

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 31/174 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYS---------------KTNRTFQVFLCPNG 52
           R I  D+E TGLD+  D IIEI  +                     +T      +   N 
Sbjct: 10  RLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLETLEAMDEW-NRNQ 68

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            + S    ++    D  +    + +   +   ++     +    ++   D  F++ ++ R
Sbjct: 69  HRRSGLWQRV---IDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMSR 125

Query: 113 INKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           + +     +  + T+  +ARR  P+  N             +  S H AL D  
Sbjct: 126 LERYFHYRNLDVSTIKELARRWAPTVANG-----------FAKSSAHTALSDVR 168


>gi|296204111|ref|XP_002749188.1| PREDICTED: interferon-stimulated gene 20 kDa protein-like
           [Callithrix jacchus]
          Length = 181

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 13/166 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E  GL    +  +   ++  +  +     +  F+ P G        ++ G+T + 
Sbjct: 8   VAMDCEMVGLGPLRESGLARCSLVNVYGAVL---YDKFIRPEGEITDYR-TRVSGVTPQH 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +     F+    E       +    + H+ K D   +  ++        D S  +     
Sbjct: 64  MVGATPFAVARLEILQLL--KGKLVVGHDLKHDFRALKEDMS--GYAIYDTSTDMVLRRE 119

Query: 130 ARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYI 172
           A+  H   R  L  L +R     I  S    H ++ D+    ++Y 
Sbjct: 120 AKLDH-CRRVSLRVLSERLLHKSIQNSLHG-HSSVEDARATMELYQ 163


>gi|149247940|ref|XP_001528357.1| hypothetical protein LELG_00877 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448311|gb|EDK42699.1| hypothetical protein LELG_00877 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 717

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 21/161 (13%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           F   + P  ++ +    K  GIT+E L D  +    I + F     +++   + H+ + D
Sbjct: 363 FDELVKP-AQEITDYVTKFSGITEEMLADVTTDLKDIQALFCKHVFQED-ILVGHSLESD 420

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY---GITI--SHRSK 157
           +  +           L  + +  ++     + P S+  L  L K +    I +     + 
Sbjct: 421 LRVM---------KILHTNIVDTSVVYEHNRGPPSKPSLKWLAKTFLDRDIQLGEGDGNG 471

Query: 158 HGALLDSHLLSDVY-IKMMVGGSQINFGFKTNEDRFFKEEK 197
           H ++ D++   D+  +K++ G     FG   NE   F+  K
Sbjct: 472 HSSIEDANTCLDLVKLKILEGKC---FGTNVNEISIFERLK 509


>gi|86131451|ref|ZP_01050049.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
 gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
          Length = 949

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 32/143 (22%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K   + FD ETTGLD     ++ +                 ++     K+  +AL     
Sbjct: 375 KQTSVCFDTETTGLDPLVAELVGVAFSWEAGKG-------YYIPFPESKDEAQAL----- 422

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                           E   FF     E I  N K+D+  +     ++           D
Sbjct: 423 --------------IEELRPFFEHTGIEKIGQNLKYDIKVLAKYDVKVKGKLF------D 462

Query: 126 TLSIARRKHPSSRNDLNSLCKRY 148
           T+      +P  R++++ L + Y
Sbjct: 463 TMLAHYLINPDMRHNMDVLAETY 485


>gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002]
 gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002]
          Length = 973

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 27/140 (19%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + +D ETTGLD +   ++ IG     D             P      P     +G    
Sbjct: 381 PVAWDTETTGLDPREVDLVGIGCCWGRD-------------PGNIAYIP-IAHHNG---- 422

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              ++   + IF         +    +  NAKFD      +   +           DT+ 
Sbjct: 423 ---NQLEKTQIFQALKPILETEKYPKVFQNAKFDRAIFAHQGISLAGVVF------DTML 473

Query: 129 IARRKHPSSRNDLNSLCKRY 148
            +   HP  +++L  L  RY
Sbjct: 474 ASYVLHPEMKHNLTDLSLRY 493


>gi|256375198|ref|YP_003098858.1| oligoribonuclease [Actinosynnema mirum DSM 43827]
 gi|255919501|gb|ACU35012.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
          Length = 208

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 27/171 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG---RKNSPEALKLH 63
           R +  D E TGLD  +D +IEI A V   + +       V +  +           +K+H
Sbjct: 3   RLVWIDCEMTGLDLGSDALIEIAALVTDAELNVLGEGVDVVIHADDEALAAMPEVVVKMH 62

Query: 64  ---GITDEFLKDKPSFSS----IFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINK 115
              G+T+E  +   + +     + +   ++  + + A    ++   D GFI  ++  +  
Sbjct: 63  AKSGLTEEVRRSTTTLAEAEALVLAYIREWVPDARTAPLAGNSIATDRGFIARDMPEL-- 120

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           D     R++D  SI    RR +P          + Y         H AL D
Sbjct: 121 DAHLHYRMVDVSSIKELCRRWYP----------RIYFAQPGKGLAHRALAD 161


>gi|114640399|ref|XP_001150488.1| PREDICTED: similar to CGI-114 protein isoform 1 [Pan troglodytes]
          Length = 222

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 31/166 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA---LKL 62
            R +  D+E TGLD + D+IIE+   +   D +       + +          +    + 
Sbjct: 41  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 100

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINKDPL 118
           HG                 EF  F  +Q          ++   D  F++  + +  K   
Sbjct: 101 HG------------KQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLH 148

Query: 119 DPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                + T+  + RR +P          + Y       + H AL D
Sbjct: 149 YRIIDVSTVKELCRRWYP----------EEYEFAPKKAASHRALDD 184


>gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
 gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
          Length = 583

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 53/153 (34%), Gaps = 44/153 (28%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M +    + I  D ETTGLD      R+I++ A +L         F     P GR     
Sbjct: 21  MEKLTAAKVIAVDTETTGLDPHTCQLRLIQLAAEDL--PVLVIDCFSFL--PEGR----- 71

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                                  E  +     +   +  NAKFD+ F+ A         +
Sbjct: 72  -----------------------ELINAILSTSGVKVFQNAKFDLQFLMAL-------DI 101

Query: 119 DPSRIIDTLSIARRKHPSS---RNDLNSLCKRY 148
            P  + DT+  ++    S    +++L +L + Y
Sbjct: 102 FPPTLFDTMLASQLLRGSGGPVQSNLKALAQHY 134


>gi|88802075|ref|ZP_01117603.1| DNA polymerase I [Polaribacter irgensii 23-P]
 gi|88782733|gb|EAR13910.1| DNA polymerase I [Polaribacter irgensii 23-P]
          Length = 980

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 35/150 (23%)

Query: 1   MIRKNKMRK--IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           ++ +N M++  + FD ETTGL +    +I I         +T + + V            
Sbjct: 399 LLLRNLMKQTAVCFDTETTGLKALEVELIGIAFSY-----ETGKGYYV------------ 441

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                     F +D+     I  +F  FF  +  E I HN K+D+  ++     +     
Sbjct: 442 ---------SFPEDQAETQRILEDFRPFFESE-IEKIGHNLKYDIKVLSTYKMPVKGKLF 491

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                 DT+      +P  R++++ L + Y
Sbjct: 492 ------DTMIAHYLINPDMRHNMDVLAETY 515


>gi|116199179|ref|XP_001225401.1| hypothetical protein CHGG_07745 [Chaetomium globosum CBS 148.51]
 gi|88179024|gb|EAQ86492.1| hypothetical protein CHGG_07745 [Chaetomium globosum CBS 148.51]
          Length = 626

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 81/261 (31%), Gaps = 49/261 (18%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEAL 60
           R +V  + TT    G+    D   +IE+G + L  +  +      V + P     +P   
Sbjct: 13  RYVVVHVATTCDEHGVYVTKDSAEVIELGWILLDANTLEELHRESVLVKPVNTPITPLCT 72

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L  +T E +++  +F    + F  F +E      + N  F    + A   R+       
Sbjct: 73  SLTTLTWEHVRNAGTFRDAVNRFDAFASEH---LTSQNLDFVFVTLEAWDLRVQLPREAR 129

Query: 121 SRIID---TLSIARRK----------------HPSSRNDLNSLCKRYGI-------TISH 154
            + +     L  +R                   P   + L ++C    +        I H
Sbjct: 130 DKSVVLPPYLQHSRAFELRTEYQRWQQHHPESLPFGPSLLTNICAALEVEAVQTSAPIKH 189

Query: 155 R-SKH----------GALLDSHLLSDVYIKMMVGGSQINFG--FKTNEDRFFKEEKKTVP 201
               H           A+ ++  L+ V   ++      +      T       + +  + 
Sbjct: 190 NLPFHLQALAPASPRRAMEEAVTLARVLRGLIRKSQPPHEHPDVLTRPMDARADVRAFLS 249

Query: 202 NISLLKRDKPLFTRITKEELD 222
             S +     L    T+ EL+
Sbjct: 250 ERSKVLHMSGLPHDTTQSELE 270


>gi|254252896|ref|ZP_04946214.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia dolosa
           AUO158]
 gi|124895505|gb|EAY69385.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia dolosa
           AUO158]
          Length = 207

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 21/171 (12%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVE---LLDYSKTNRTFQVFLCPNG-RKNSPEA 59
           +N++  +  D+E TGLD  NDRIIEI  V     LD +     F +        K     
Sbjct: 15  RNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWN 74

Query: 60  LKLHGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
              HG +          + +  + + + +    +     +    ++   D  F+   +  
Sbjct: 75  KSTHGRSGLIERVRASTVTEADAAAQLQAFLAQYVPPGKSPMCGNSICQDRRFMARWMPE 134

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + +     +  + TL    R+   +                 R+ H AL D
Sbjct: 135 LERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 175


>gi|218184536|gb|EEC66963.1| hypothetical protein OsI_33617 [Oryza sativa Indica Group]
          Length = 801

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 25/136 (18%)

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDPS 121
           G+T EF+ +             F  + +  W+A++  +D+ F+   LQ      + L P 
Sbjct: 448 GVTPEFVYEG------LLRHLPF-GDGSVTWVAYHGDYDLAFLLRLLQGGDHGGNCLLPP 500

Query: 122 RIIDTLSIARRKHP--------------SSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           ++   L   R K P                   L +L +  GI  +    H A  D+ L 
Sbjct: 501 KLATFLQKVREKFPVFYDVRVLGKLVKDGFNGSLTALAEYLGIPRNGDEHH-AGSDALLT 559

Query: 168 SDVYIKMM-VGGSQIN 182
              + K++ + G Q++
Sbjct: 560 LSCFFKIVSLSGHQMH 575


>gi|224372423|ref|YP_002606795.1| DNA polymerase I [Nautilia profundicola AmH]
 gi|223590027|gb|ACM93763.1| DNA polymerase I [Nautilia profundicola AmH]
          Length = 872

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 31/147 (21%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I K + + + FD ET  L  +N  I+        + +        ++       +   L 
Sbjct: 314 IDKIEDKIVAFDTETDSL--ENPNIVGFSFAYEKNKA-------YYV-----PINHFYLG 359

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +         D+    +         +++    I HN KFD   +    ++   +   P+
Sbjct: 360 VT--------DQIPEKTALKAIQKILDKK---VIGHNLKFDFKML----KKYGLEI--PT 402

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY 148
              DT+ +A    P S   L+S+ KRY
Sbjct: 403 PHADTMILAWILDPDSPVGLDSVAKRY 429


>gi|218133766|ref|ZP_03462570.1| hypothetical protein BACPEC_01635 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991141|gb|EEC57147.1| hypothetical protein BACPEC_01635 [Bacteroides pectinophilus ATCC
           43243]
          Length = 354

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 30/150 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++FDIETTG  S++  +  IGA+   +     R +                        F
Sbjct: 20  VMFDIETTGFSSRSTYLYLIGAIYRDNKKLILRQW------------------------F 55

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD-PLDPSRIIDTL 127
            ++K + +++ + F++   E  ++   +N+  FD+ ++N   +  N    LD    ID  
Sbjct: 56  AENKQAEAAVLASFFEILGEH-SKICGYNSNGFDIPYVNERCRHYNLPYTLDAYESIDIF 114

Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISH 154
              +              S+    GI    
Sbjct: 115 RQIKPLSALLKLENYKQKSVEHFLGIDRED 144


>gi|297671405|ref|XP_002813830.1| PREDICTED: three prime repair exonuclease 1-like [Pongo abelii]
          Length = 314

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 83/255 (32%), Gaps = 46/255 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAV------------------ELLDYSKTNRTFQVFL 48
              I FD+E TGL     ++ E+  +                   +    +      + +
Sbjct: 12  QTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPISQGPPPTVPPPPRVVDKLSLCV 71

Query: 49  CPNGRKNSPEALKLHGITDEFLK--DKPSFSSIFSEFWDFFNE---QNAEWIAHN-AKFD 102
            P G+  SP A ++ G++   L    +  F    +     F     Q    +AHN  ++D
Sbjct: 72  AP-GKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDRYD 130

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGIT 151
              + AEL  +     LD +  +D+++  +            P     L S+  R YG +
Sbjct: 131 FPLLQAELALLGLTSALDGAFCVDSITALKALERASSPSEHGPRKSYSLGSIYTRLYGQS 190

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                 H A  D   L    + +     Q    +     R F   +     ++   R KP
Sbjct: 191 PPD--SHTAEGDVLAL----LSICQWRPQALLRWVDAHARPFGTIRPMY-GVTASARTKP 243

Query: 212 LFTRITKEELDEHDK 226
             + +T      H  
Sbjct: 244 RPSAVT---TTAHLA 255


>gi|319761926|ref|YP_004125863.1| exonuclease rnase t and DNA polymerase iii [Alicycliphilus
           denitrificans BC]
 gi|330826210|ref|YP_004389513.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
           denitrificans K601]
 gi|317116487|gb|ADU98975.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
           denitrificans BC]
 gi|329311582|gb|AEB85997.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
           denitrificans K601]
          Length = 203

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 21/173 (12%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEALK 61
           K+    +  D E +GL+ + +R++EI  V      +      V +   P+   ++ +A  
Sbjct: 25  KSDQNLVWLDCEMSGLNPETERLLEIAVVVTGPGLEPRVEGPVLVIHQPDTVLDAMDAWN 84

Query: 62  --LHG----ITD---EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
              HG    I       L +  +   I      +  +       ++   D  F+   + R
Sbjct: 85  KGTHGRSGLIDKVRASTLTEADAEQQIIDFLSRYVPKGKVPMCGNSIGQDRRFLVKYMPR 144

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           +       +  + TL    R+      D          +     +H AL D H
Sbjct: 145 LEAFFHYRNVDVSTLKELARRWKPEAYD----------SFKKAQRHTALADVH 187


>gi|296225121|ref|XP_002758506.1| PREDICTED: three prime repair exonuclease 1-like [Callithrix
           jacchus]
          Length = 404

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 84/247 (34%), Gaps = 43/247 (17%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKT--------------NRTFQVFL 48
              I FD+E TGL     ++ E+  + +    L+   T                   + +
Sbjct: 102 QTLIFFDMEATGLPFSQPKVTELCLLAVHRCALENPPTSQGPPPIVPPPPRVVDKLSLCV 161

Query: 49  CPNGRKNSPEALKLHGITDEFLK--DKPSFSSIFSEFWDFFNE---QNAEWIAHN-AKFD 102
            P G+  SP A+ + G++   L    +  F    +     F +   Q    +AHN  ++D
Sbjct: 162 AP-GKACSPAAINITGLSTAVLAAHGRQCFDDNLANLLLAFLQRQPQPWCLVAHNGDRYD 220

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGIT 151
              + AEL  +     LD +  +D+++  +            P     L S+  R YG +
Sbjct: 221 FPLLQAELAMLGLTSALDGAFCVDSITALKALERAGSPSEHGPRKSYSLGSIYTRLYGKS 280

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                 H A  D   L    + +     Q    +     R F   +     ++     KP
Sbjct: 281 PPD--SHTAEGDVLAL----LSICQWRPQALLRWVDAHARPFSTIRPMY-GVTASASTKP 333

Query: 212 LFTRITK 218
             + +T 
Sbjct: 334 RPSAVTA 340


>gi|32491178|ref|NP_871432.1| oligoribonuclease [Wigglesworthia glossinidia endosymbiont of
           Glossina brevipalpis]
 gi|81844446|sp|Q8D2C5|ORN_WIGBR RecName: Full=Oligoribonuclease
 gi|25166385|dbj|BAC24575.1| yjeR [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 186

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 60/173 (34%), Gaps = 25/173 (14%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT------FQVF--LCPNGRKN 55
            NK   I  D+E TGL+ +NDRIIEI  V    Y K          FQ    L      N
Sbjct: 7   LNKKNLIWIDLEMTGLNLENDRIIEIATVITDKYVKILAEGPSIAIFQSEEQLKKMNSWN 66

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQ 111
                K +G+ D   K K +  +   +   F +       +     +   D  F++  + 
Sbjct: 67  IFTHTK-NGLIDRVRKSKYNEKNAMIDTLKFISSWVPFGKSPICGSSINHDRLFLSKYMP 125

Query: 112 RINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            + K        +  +  +ARR  P   + L             +  H AL D
Sbjct: 126 DLEKYFHYRCLDVSVIKELARRWKPKILSKLKK-----------KHTHKALDD 167


>gi|319779642|ref|YP_004130555.1| 3'-to-5' oligoribonuclease (orn) [Taylorella equigenitalis MCE9]
 gi|317109666|gb|ADU92412.1| 3'-to-5' oligoribonuclease (orn) [Taylorella equigenitalis MCE9]
          Length = 181

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 24/175 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----S 56
           M  K+  R +  D+E TGL+   DRIIE+  +             V++            
Sbjct: 1   MPNKSH-RMVWLDMEMTGLNPDQDRIIEVAVIITEADLSVVAEAPVYVIHQDDAILNSMD 59

Query: 57  PEALKLH---GI----TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
                 H   G+     +  L +     ++   F +   E       ++   D  F+   
Sbjct: 60  KWNTSTHTKSGLVSKVKESKLNEAQVEEALLKFFKEHIPEGCIPLCGNSVNQDRRFMFKY 119

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + ++ K     +  + T   +A+R  P   N               + KH AL D
Sbjct: 120 MPKLEKYLHYRTVDVSTFKELAKRWKPEVYNS-----------FKKQGKHEALAD 163


>gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6]
 gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6]
          Length = 934

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 43/157 (27%), Gaps = 32/157 (20%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R      +  D ET  LD    RII I  AV+ L+ +           P G         
Sbjct: 352 RLQAAPLVAIDTETDSLDPMRARIIGISFAVQPLEAAYV---------PVGHDYPGA--- 399

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
                     D+     + +    +  +     +  N K+D           N       
Sbjct: 400 ---------PDQLPLDEVLARLRPWLEDAGTRKVGQNIKYDSHVF------ANHGVTVRG 444

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY----GITISH 154
              DT+  +        + L SL  R+    GI    
Sbjct: 445 YAHDTMLESYVLEAHKPHGLASLADRHLGRSGINYED 481


>gi|71019223|ref|XP_759842.1| hypothetical protein UM03695.1 [Ustilago maydis 521]
 gi|46099640|gb|EAK84873.1| hypothetical protein UM03695.1 [Ustilago maydis 521]
          Length = 671

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 67/205 (32%), Gaps = 33/205 (16%)

Query: 6   KMRKIVFDIE----TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++  +  D E    T GL      +  +  V+       +   +               +
Sbjct: 446 QLDIVALDCELSYTTAGLT-----LTRLTLVDEEGEMILDELVRT-----RTDIVDYNTR 495

Query: 62  LHGITDEFLKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             GIT E  ++K  F    +      F   +N   + H  + D+  I           L 
Sbjct: 496 FSGITPEEYEEKAVFTLEQVRKTMAQFVG-ENTILVGHGLENDLRAIR----------LV 544

Query: 120 PSRIIDT--LSIARRKHPSSRNDLNSL-CKRYGITISHRSK--HGALLDSHLLSDVYIKM 174
             +++DT  L    R  P  R  L  L  K  G  I +++   H +L D+ +  ++    
Sbjct: 545 HDKVVDTVMLYPHARGFPF-RTSLRDLTAKYLGKIIQNQTSLGHSSLEDARMSLELVRYK 603

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKT 199
           MV      F  +   D   K  + T
Sbjct: 604 MVNDPTSPFASQETHDNSVKVARAT 628


>gi|226483657|emb|CAX74129.1| three prime repair exonuclease 1 [Schistosoma japonicum]
          Length = 234

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 20/142 (14%)

Query: 10  IVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQ-------VFLCPNGRKNSPEAL 60
           ++FD+ETTGL S   N  I E+  +    +   N T +              R  S  A 
Sbjct: 18  VLFDVETTGLPSANFNPEITELCMLACSRFGLENATDEPRVENKLTLCFNPTRTISSIAS 77

Query: 61  KLHGITDEFLKDKPSFS-SIFSEFWDFFNEQNAE--WIAHNA-KFDVGFINAELQ----- 111
           K+ G+  + L  +  F  S       F N  ++   ++AHN  +FD   + A++      
Sbjct: 78  KISGLNSDNLFHQKDFDSSAVDLIQLFLNRLDSPVCFVAHNGLRFDFPLLRAQIMSVKGN 137

Query: 112 --RINKDPLDPSRIIDTLSIAR 131
             ++N     P    DTL + R
Sbjct: 138 DYKLNDSTNAPIICTDTLHLFR 159


>gi|149197758|ref|ZP_01874808.1| oligoribonuclease [Lentisphaera araneosa HTCC2155]
 gi|149139328|gb|EDM27731.1| oligoribonuclease [Lentisphaera araneosa HTCC2155]
          Length = 184

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 55/178 (30%), Gaps = 33/178 (18%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGA--------VELLDYSKTNRTFQVFLCPNGRK 54
            K+    +  D+E TGL+  ND+IIEI          +               +      
Sbjct: 1   MKSTNNLVWMDLEMTGLNPDNDKIIEIATLVTDSELNIIAKGPCLIIHQSDEVMN----N 56

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSE---------FWDFFNEQNAEWIAHNAKFDVGF 105
            +   +K HG  +  L      S++  E           +F  +  A    ++   D  F
Sbjct: 57  MNDWCIKHHG--ESGLTQAVKESTVSQEEACRQTRDFILEFCEKGRAPLCGNSIGQDRMF 114

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   +  I          + ++     +    +       K Y    + ++ H AL D
Sbjct: 115 LTKHMPDIIDVLHYRVVDVSSMKELFNRWYGQK-------KSY---FTKKTSHRALDD 162


>gi|33593655|ref|NP_881299.1| oligoribonuclease [Bordetella pertussis Tohama I]
 gi|33596303|ref|NP_883946.1| oligoribonuclease [Bordetella parapertussis 12822]
 gi|33602411|ref|NP_889971.1| oligoribonuclease [Bordetella bronchiseptica RB50]
 gi|41017436|sp|Q7VVH7|ORN_BORPE RecName: Full=Oligoribonuclease
 gi|41017438|sp|Q7W9T4|ORN_BORPA RecName: Full=Oligoribonuclease
 gi|41017439|sp|Q7WGX3|ORN_BORBR RecName: Full=Oligoribonuclease
 gi|33563728|emb|CAE42963.1| oligoribonuclease [Bordetella pertussis Tohama I]
 gi|33566072|emb|CAE36971.1| oligoribonuclease [Bordetella parapertussis]
 gi|33576850|emb|CAE33930.1| oligoribonuclease [Bordetella bronchiseptica RB50]
 gi|332383059|gb|AEE67906.1| oligoribonuclease [Bordetella pertussis CS]
          Length = 181

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 31/178 (17%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL- 60
           +  N+ R +  D+E TGLD + +RIIE+  V                 P    + P++L 
Sbjct: 1   MAANENRLVWLDMEMTGLDPEKERIIEVAVVVTEADLTVVAE-----GPVLVVHQPDSLL 55

Query: 61  --------KLHGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
                     HG +          L +  +   +     +      +    +    D  F
Sbjct: 56  DAMDNWNKSTHGKSGLIEKVKASTLGEAQAEQILLEFLAEHVPAGKSPLCGNTISQDRRF 115

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + A +  + +     +  + TL    R+   +                 +S+H AL D
Sbjct: 116 MYAYMPNLERFFHYRNLDVSTLKELARRWAPAVYK----------GFDKKSRHEALAD 163


>gi|134295109|ref|YP_001118844.1| oligoribonuclease [Burkholderia vietnamiensis G4]
 gi|166215757|sp|A4JCK6|ORN_BURVG RecName: Full=Oligoribonuclease
 gi|134138266|gb|ABO54009.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
           vietnamiensis G4]
          Length = 200

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 59/173 (34%), Gaps = 25/173 (14%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVE---LLDYSKTNRTFQVFLCPNG-RKNSPEA 59
           +N++  +  D+E TGLD  NDRIIEI  V     LD +     F +        K     
Sbjct: 15  RNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWN 74

Query: 60  LKLHGITDEFLKDKPSFSSI---------FSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
              HG     L D+   S++          +   D+ +   +    ++   D  F+   +
Sbjct: 75  KSTHG--RSGLIDRVRASTVTEAQAAAQLQAFLADYVSPGKSPMCGNSICQDRRFMARWM 132

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
               +     +  + TL    R+   +                 R+ H AL D
Sbjct: 133 PEFERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 175


>gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
 gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
          Length = 971

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG D     ++ +      +        Q F  P                     
Sbjct: 403 LDTETTGTDPITAELVGMSFSYAEN--------QAFYVPVP------------------A 436

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D+     I +EF   F ++ A  +  N K+D+  +       N        + DT+    
Sbjct: 437 DRTEAQKIVNEFRPAFEKEGALKVGQNIKYDMLVLG------NYGTEVRGPLFDTMVAHY 490

Query: 132 RKHPSSRNDLNSLCKRY 148
              P  R++++ L + Y
Sbjct: 491 VLQPELRHNMDYLAEIY 507


>gi|237724388|ref|ZP_04554869.1| DNA polymerase I [Bacteroides sp. D4]
 gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4]
          Length = 971

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG D     ++ +      +        Q F  P                     
Sbjct: 403 LDTETTGTDPITAELVGMSFSYAEN--------QAFYVPVP------------------A 436

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D+     I +EF   F ++ A  +  N K+D+  +       N        + DT+    
Sbjct: 437 DRTEAQKIVNEFRPAFEKEGALKVGQNIKYDMLVLG------NYGTEVRGPLFDTMVAHY 490

Query: 132 RKHPSSRNDLNSLCKRY 148
              P  R++++ L + Y
Sbjct: 491 VLQPELRHNMDYLAEIY 507


>gi|218247875|ref|YP_002373246.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|257060804|ref|YP_003138692.1| DNA polymerase I [Cyanothece sp. PCC 8802]
 gi|218168353|gb|ACK67090.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|256590970|gb|ACV01857.1| DNA polymerase I [Cyanothece sp. PCC 8802]
          Length = 972

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 29/145 (20%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + +D ETT L+ +N  ++ IG       +        ++ P G                
Sbjct: 383 PVAWDTETTSLEPRNAELVGIGCCWGEKSTDI-----AYI-PTGHNK------------- 423

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              ++    ++               +  N KFD      +   +           DTL 
Sbjct: 424 --GNQLKKEAVLQALKPILESDRYPKVFQNTKFDRLIFYHQGINLKGVVF------DTLL 475

Query: 129 IARRKHPSSRNDLNSLCKRY--GIT 151
            +   HP   ++L+ LC RY  GIT
Sbjct: 476 ASYVLHPEMSHNLSDLCYRYLSGIT 500


>gi|15668541|ref|NP_247339.1| hypothetical protein MJ_0365 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2495934|sp|Q57811|Y365_METJA RecName: Full=Uncharacterized protein MJ0365
 gi|1499152|gb|AAB98356.1| hypothetical protein MJ_0365 [Methanocaldococcus jannaschii DSM
           2661]
          Length = 176

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 52/161 (32%), Gaps = 45/161 (27%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNSPEALKLH 63
           M K + DIETTGL+    RI+ IG V+L D          + + +               
Sbjct: 1   MAKAIIDIETTGLNPMEHRIVAIG-VKLGDRDIILMDESEYYLLVN-------------- 45

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGF--INAELQRINKDPLDP 120
                              FWD   ++  E  I  N  FD  F  + +   R+       
Sbjct: 46  -------------------FWDTVEKEGIEKIIGFNIDFDWQFLKLRSLYHRLKIKHFRK 86

Query: 121 SR-IIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSK 157
            +  +D    L+ +  ++      L   C+  GI +     
Sbjct: 87  YQGRVDLRQILNGSGGQYRKG-TKLVDYCRFLGIDVPEDDA 126


>gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont]
          Length = 929

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 83/249 (33%), Gaps = 63/249 (25%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ET  LD+ +  I+ I                  + P      P A        ++L
Sbjct: 353 AFDLETDSLDTLSANIVGIAFA---------------VAPGKAAYLPVA-------HDYL 390

Query: 71  KDKPS---FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            D P     +++  +      +  A  +  N K+D G +      +N          DT+
Sbjct: 391 -DAPPQLDRAAVLKQLKPLLEDSKAAKVGQNLKYDRGVLKNYDIELNGIKF------DTM 443

Query: 128 SIARRKHP-SSRNDLNSLCKR-----------------YGITISH----RSKHGALLDSH 165
             +   +    ++D++SL  R                 Y +T +     ++ H A  D+ 
Sbjct: 444 LESYCLNSVGGKHDMDSLAARWLNHKTVTFEEIAGKGKYQLTFNQIALEQAAHYAAEDAD 503

Query: 166 LLSDVYIKM------MVGGSQINFGFKTNEDRFFKEEKKTVPNIS---LLKRDKPLFTRI 216
           +   ++++M        G  Q+    +          ++    I    L K  + L TR+
Sbjct: 504 VTLQLHLQMWPKLEQEAGPKQVFEAIEMPLVTVISRVERNGVLIDQNILAKHSQELTTRL 563

Query: 217 TKEELDEHD 225
            + E   H+
Sbjct: 564 AELEQKAHE 572


>gi|300721471|ref|YP_003710746.1| oligoribonuclease [Xenorhabdus nematophila ATCC 19061]
 gi|297627963|emb|CBJ88512.1| oligoribonuclease [Xenorhabdus nematophila ATCC 19061]
          Length = 181

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 61/188 (32%), Gaps = 51/188 (27%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + K++   I  D+E TGLD + DRIIEI  +            ++ +   G         
Sbjct: 1   MSKSENNLIWIDLEMTGLDPERDRIIEIATIVTD--------SELNILAEGPVI-----A 47

Query: 62  LHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEWIA 96
           +H  +DE L                          D  +  +  +    +     +    
Sbjct: 48  VHQ-SDEQLALMDDWNIRTHTGSGLVERVKQSQCDDAQAEKATIAFLEQWVPAGKSPICG 106

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHR 155
           ++   D  F+   +  + K        + TL  +ARR  P     L+          S +
Sbjct: 107 NSVGQDRRFLFRYMPELEKYFHYRYLDVSTLKELARRWKPEL---LS--------EFSKK 155

Query: 156 SKHGALLD 163
           + H AL D
Sbjct: 156 NTHQALDD 163


>gi|282854757|ref|ZP_06264092.1| exonuclease [Propionibacterium acnes J139]
 gi|282582339|gb|EFB87721.1| exonuclease [Propionibacterium acnes J139]
          Length = 205

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 24/171 (14%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSP---EALK 61
           K   +  D E TGLD  +D +IE+ A+              V + P  +           
Sbjct: 2   KDMLVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPESQWLDHMNDFVRD 61

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRI 113
           +H   G+  E L    + +    +  D+          A    +    D  F+  ++ ++
Sbjct: 62  MHTTSGLLAE-LDKGLTMTQAQDQVLDYIRTYVPQAGKAPLAGNTIGTDRSFLVKDMPKL 120

Query: 114 NKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                  +  + ++  +ARR +P          + +G +   +  H AL D
Sbjct: 121 ESYVHYRNVDVSSIKELARRWYP----------RAFGHSPQKQGNHRALAD 161


>gi|302545204|ref|ZP_07297546.1| oligoribonuclease [Streptomyces hygroscopicus ATCC 53653]
 gi|302462822|gb|EFL25915.1| oligoribonuclease [Streptomyces himastatinicus ATCC 53653]
          Length = 202

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 28/171 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH 63
           R +  D E TGL   +D +IE+ A V   + +       + + P     +  PE + ++H
Sbjct: 4   RMVWIDCEMTGLSLSDDALIEVAALVTDSELNILGDGVDIVVRPPAESLTTMPEVVREMH 63

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINK 115
              G+  E L    + +   ++   +  E       A    ++   D GF+  ++  +  
Sbjct: 64  TASGLLAE-LDGGTTLADAEAQVLAYIREHVPDAGKAPLCGNSVSTDRGFLLRDMPTL-- 120

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +     RI+D  S+   ARR +P            +     + + H AL D
Sbjct: 121 EAYLHYRIVDVSSVKELARRWYPR---------AYFNSPKKNGN-HRALAD 161


>gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
 gi|212664838|gb|EEB25410.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
          Length = 971

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG D     ++ +      +        Q F  P                     
Sbjct: 403 LDTETTGTDPITAELVGMSFSYAEN--------QAFYVPVP------------------A 436

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D+     I +EF   F ++ A  +  N K+D+  +       N        + DT+    
Sbjct: 437 DRTEAQKIVNEFRPAFEKEGALKVGQNIKYDMLVLG------NYGTEVRGPLFDTMVAHY 490

Query: 132 RKHPSSRNDLNSLCKRY 148
              P  R++++ L + Y
Sbjct: 491 VLQPELRHNMDYLAEIY 507


>gi|58581832|ref|YP_200848.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623734|ref|YP_451106.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576613|ref|YP_001913542.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|81311869|sp|Q5H0Q8|ORN_XANOR RecName: Full=Oligoribonuclease
 gi|123522125|sp|Q2P3P5|ORN_XANOM RecName: Full=Oligoribonuclease
 gi|58426426|gb|AAW75463.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367674|dbj|BAE68832.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521065|gb|ACD59010.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 194

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 31/174 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDY---------------SKTNRTFQVFLCPNG 52
           R I  D+E TGLD+  D IIEI  +                     +T      +   N 
Sbjct: 10  RLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLETLEAMDEW-NRNQ 68

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            + S    ++    D  +    + +   +   ++     +    ++   D  F++ ++ R
Sbjct: 69  HRRSGLWQRV---LDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSR 125

Query: 113 INKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           + +     +  + T+  +ARR  P+  N             +  S H AL D  
Sbjct: 126 LERYFHYRNLDVSTIKELARRWAPTVANG-----------FAKSSAHTALSDVR 168


>gi|328863733|gb|EGG12832.1| hypothetical protein MELLADRAFT_114944 [Melampsora larici-populina
           98AG31]
          Length = 321

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 26/159 (16%)

Query: 41  NRTFQVFLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSEF-WDFFNEQNAEWIAHN 98
              ++ F+ P  R   S    +L GIT +   + P+  ++  +F  +F        + HN
Sbjct: 123 VDRYRSFVKPTWRPEISEFCTQLTGITQQDTDNAPTLPAMLKDFQINFIERHQLFTV-HN 181

Query: 99  AKF----------DVGFINAELQRINKDPLD-----PSRIIDT-------LSIARRKHPS 136
                        D    +  L ++ +  +      P  +ID        +       P 
Sbjct: 182 RSVWVTDGPWDLRDHWIKSIFLSKLKRYQIPSYLQSPIHMIDMRYLLQAFIPKVYCIRPP 241

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +   LN   K +G+    +  H  + D+  LS +  K+ 
Sbjct: 242 TSLSLNESLKIFGLEFEGQE-HSGIDDAANLSRLLSKLT 279


>gi|285018424|ref|YP_003376135.1| oligoribonuclease [Xanthomonas albilineans GPE PC73]
 gi|283473642|emb|CBA16145.1| probable oligoribonuclease protein [Xanthomonas albilineans]
          Length = 190

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 23/170 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-------DYSK--TNRTFQVF--LCPNGRKNS 56
           R I  D+E TGLD++ D IIEI  V          +  +       Q    +    R   
Sbjct: 10  RLIWIDLEMTGLDTERDSIIEIATVVTDAQLNVLAEGPEFAIAHPLQTLEAMDEWNRNQH 69

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            ++     + D  +    + +   +    +     +    ++   D  F++ ++ R+ + 
Sbjct: 70  RQSGLWQRVLDSQVGLAQAEAQTMAFLTQWCKPGASPMCGNSICQDRRFLHRQMPRLERF 129

Query: 117 PLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
               +  + TL  +ARR  P+  + L              S H AL D H
Sbjct: 130 FHYRNLDVSTLKELARRWAPTVSSGLVK-----------TSSHTALSDVH 168


>gi|326490993|dbj|BAK05596.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 285

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 62/230 (26%), Gaps = 31/230 (13%)

Query: 9   KIVFDIETTGLDSKND------RIIEIGAVELLDY--SKTNRTFQVFLCPNGRK-NSPEA 59
            +V D E T    + D       IIE  AV L+D         F+ ++ P      +   
Sbjct: 54  FLVVDFEAT---CEKDARIYPQEIIEFPAV-LVDGATGHLASAFRCYIRPKHHPALTKFC 109

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFN------------EQNAEWIAHNAKFDVGFIN 107
             L GI  E +               +              +     +     +D   + 
Sbjct: 110 RDLTGIRQEDVDGGVDLGQALRLHDAWLKAATTTGAGTKRCDGRLAVVTW-GDWDCRTML 168

Query: 108 AELQRINK--DPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
               R      P    R I+  +          R +L    +  G+    R  H  L D+
Sbjct: 169 EFECRFKGIEKPSYFDRWINLRVPFQAALGSGGRVNLQEAVRVAGLDWEGR-LHCGLDDA 227

Query: 165 HLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKR-DKPLF 213
              + +   +M+ G +++           + +              +P  
Sbjct: 228 RNTARLLADLMLRGVKMSITDSLALPPPIQRQPPHTIRCDGSSALPRPPI 277


>gi|226490305|emb|CAQ42995.1| exonuclease [Escherichia coli]
          Length = 156

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 44/134 (32%), Gaps = 5/134 (3%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNS-P 57
           M   +K    +  D ET G     DR  +  A+   D ++        +  P       P
Sbjct: 1   MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQP 60

Query: 58  EALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINK 115
            A+ + GIT +  + K  + ++  +     F   +      +N +FD         R   
Sbjct: 61  GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFY 120

Query: 116 DPLDPSRIIDTLSI 129
           DP   S   D    
Sbjct: 121 DPYAWSWQHDNSRW 134


>gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer DSM 15868]
 gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer DSM 15868]
 gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM]
 gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Riemerella anatipestifer RA-GD]
          Length = 935

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 47/140 (33%), Gaps = 34/140 (24%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDE 68
           + FD ETT LD     +I I                 ++  P  R    EA         
Sbjct: 365 VCFDTETTSLDEMEAELIGISFSYKKG-------LAYYVPIPENR---AEAQA------- 407

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                     I   F  FF +++   IAHN K+D   +      +N        + DT+ 
Sbjct: 408 ----------IVERFRPFFEKESILKIAHNLKYDYKVL------LNYGIEVTGNLFDTMI 451

Query: 129 IARRKHPSSRNDLNSLCKRY 148
                +P  R+ ++ L + Y
Sbjct: 452 AHYLLNPDGRHGMDYLSEMY 471


>gi|294665061|ref|ZP_06730367.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605179|gb|EFF48524.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 194

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 31/174 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDY---------------SKTNRTFQVFLCPNG 52
           R I  D+E TGLD+  D IIEI  +                     +T      +   N 
Sbjct: 10  RLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLETLEAMDEW-NRNQ 68

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            + S    ++    D  +    + +   +   ++     +    ++   D  F++ ++ R
Sbjct: 69  HRRSGLWQRV---LDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSR 125

Query: 113 INKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           + +     +  + T+  +ARR  P+  N             +  S H AL D  
Sbjct: 126 LERYFHYRNLDVSTIKELARRWAPTVANG-----------FAKSSAHTALSDVR 168


>gi|314923751|gb|EFS87582.1| exonuclease [Propionibacterium acnes HL001PA1]
 gi|314966126|gb|EFT10225.1| exonuclease [Propionibacterium acnes HL082PA2]
 gi|314982038|gb|EFT26131.1| exonuclease [Propionibacterium acnes HL110PA3]
 gi|315090803|gb|EFT62779.1| exonuclease [Propionibacterium acnes HL110PA4]
 gi|315095017|gb|EFT66993.1| exonuclease [Propionibacterium acnes HL060PA1]
 gi|315104354|gb|EFT76330.1| exonuclease [Propionibacterium acnes HL050PA2]
 gi|327328205|gb|EGE69974.1| oligoribonuclease [Propionibacterium acnes HL103PA1]
          Length = 202

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 24/165 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSP---EALKLH---G 64
            D E TGLD  +D +IE+ A+              V + P  +           +H   G
Sbjct: 5   IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPESQWLDHMNDFVRDMHTTSG 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +  E L    + +    +  D+          A    +    D  F+  ++ ++      
Sbjct: 65  LLAE-LDKGLTMTQAQDQVLDYIRTYVPQAGKAPLAGNTIGTDRSFLVKDMPKLESYVHY 123

Query: 120 PSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  + ++  +ARR +P          + +G +   +  H AL D
Sbjct: 124 RNVDVSSIKELARRWYP----------RAFGHSPQKQGNHRALAD 158


>gi|297825941|ref|XP_002880853.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297326692|gb|EFH57112.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 223

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 32/175 (18%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDY---SKTNRTFQVFLCPNGRKNSPEALKL 62
           K   +  D+E TGL+ + DRI+EI  +        S       V    +      E  + 
Sbjct: 44  KQPLVWIDLEMTGLNVEVDRILEIACIITDGNLTKSVEGPDLVVHQTKDCLDKMGEWCQT 103

Query: 63  H----GITDE----FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           H    G+T +     + ++ +   +          +N     ++   D  F+   +  + 
Sbjct: 104 HHGDSGLTKKVRLSTISEREAEQKVIEFVRKHVGSENPLLAGNSVYVDFLFLKKYMPEL- 162

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK------HGALLD 163
              L P  ++D             + + +LC R+   I  R        H A+ D
Sbjct: 163 -AALFPHILVDV------------SSVKALCSRW-FPIEKRRAPAKKNNHRAMDD 203


>gi|255731428|ref|XP_002550638.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240131647|gb|EER31206.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 395

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 68/192 (35%), Gaps = 24/192 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFL-------CPNGRKNSPEALK 61
             D+E     ++    I I   +  +        T  + +         NGR     A+ 
Sbjct: 119 AIDVEAWEFSTETVTEIGIAIYDPREQQVSLVPSTIHIHIRIKENLNKTNGRYVPNHAMN 178

Query: 62  LHG-ITDEFLK-DKPSFSS-----IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            +G IT    + +   F+       FS+        +   + H+ K DV ++N+    + 
Sbjct: 179 FNGNITYIMSQTEAVYFTQSLVNYYFSQIQQ--TGYSCYLVGHDVKGDVKWMNS----LG 232

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +     + IDT  + R  H  +   L    +   I  ++   H A  D++    + +K+
Sbjct: 233 VNFPTGYQTIDTNHLCRISHGRANISLKKALEAVDIPYAY--LHNAGNDAYYTLLLAMKL 290

Query: 175 MVGGSQINFGFK 186
               S++ +G  
Sbjct: 291 CDPQSRVRYGLD 302


>gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
 gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
          Length = 971

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG D     ++ +      +        Q F  P                     
Sbjct: 403 LDTETTGTDPITAELVGMSFSYAEN--------QAFYVPVP------------------A 436

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D+     I +EF   F ++ A  +  N K+D+  +       N        + DT+    
Sbjct: 437 DRTEAQKIVNEFRPAFEKEGALKVGQNIKYDMLVLG------NYGTEVRGPLFDTMVAHY 490

Query: 132 RKHPSSRNDLNSLCKRY 148
              P  R++++ L + Y
Sbjct: 491 VLQPELRHNMDYLAEIY 507


>gi|21225668|ref|NP_631447.1| hypothetical protein SCO7397 [Streptomyces coelicolor A3(2)]
 gi|7160111|emb|CAB76298.1| conserved hypothetical protein SC10G8.25c [Streptomyces coelicolor
           A3(2)]
          Length = 198

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 58/175 (33%), Gaps = 13/175 (7%)

Query: 11  VFDIETT---GLDSKND--RIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           V D+E T   G     +   I+EIG AV  LD  +     ++ + P   + S    +L G
Sbjct: 16  VIDLEATCWDGQPPPGEVSEIVEIGLAVVDLDARERVGRHRILVRPTRSRVSAFCTELTG 75

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           IT        S +          +   A   A    +D      +               
Sbjct: 76  ITQAEADRGVSLARACDTLVRE-HGAGARPWASWGDYDRKQFVRQCAADGVPYPFGHPAE 134

Query: 125 DTLSIARRKHPSS-----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              + A+     +     R  +    +  G+ ++ R  H  + D+  ++ + +++
Sbjct: 135 RAHTNAKAVFTEAHGLRRRPGMAQALEIAGLPLAGR-HHRGVDDAWNIAALVLRL 188


>gi|18407526|ref|NP_566124.1| exonuclease family protein [Arabidopsis thaliana]
 gi|42571283|ref|NP_973715.1| exonuclease family protein [Arabidopsis thaliana]
 gi|79324951|ref|NP_001031560.1| exonuclease family protein [Arabidopsis thaliana]
 gi|14423456|gb|AAK62410.1|AF386965_1 putative exonuclease [Arabidopsis thaliana]
 gi|20148281|gb|AAM10031.1| putative exonuclease [Arabidopsis thaliana]
 gi|20197555|gb|AAD13713.2| Expressed protein [Arabidopsis thaliana]
 gi|330255840|gb|AEC10934.1| exonuclease-like protein [Arabidopsis thaliana]
 gi|330255841|gb|AEC10935.1| exonuclease-like protein [Arabidopsis thaliana]
 gi|330255842|gb|AEC10936.1| exonuclease-like protein [Arabidopsis thaliana]
          Length = 344

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 9/108 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++++ +  D E  G  +    I +  +V L+D  +    F   + P          ++ G
Sbjct: 128 SRLKAMALDCEMVGGGADG-TIDQCASVCLVDDDENV-IFSTHVQPLLPVTDYRH-EITG 184

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF------NEQNAEWIAHNAKFDVGFI 106
           +T E LKD      +    + F              + H+ + D+  +
Sbjct: 185 LTKEDLKDGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCL 232


>gi|46105698|ref|XP_380564.1| hypothetical protein FG00388.1 [Gibberella zeae PH-1]
          Length = 215

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 14/141 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLC-PNGR--KNSPEALKLH--- 63
            D E TGLD  ND IIEI  +      +      F   +  P  R  +      K H   
Sbjct: 24  IDCEMTGLDQDNDEIIEIYCIITTGNLEILDEEGFHAIIHFPQSRLDQMDEWCTKTHAES 83

Query: 64  GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFI-NAELQRINKDP 117
           G+T   L+   +        +++        +      ++   D  F+     +R+ +  
Sbjct: 84  GLTAAVLESTTTPEQAADALYEYITRFIPERKRGLLAGNSVHCDRAFLRREPYKRVMRHL 143

Query: 118 LDPSRIIDTLSIARRKHPSSR 138
                 + ++  A R+  + R
Sbjct: 144 HHRILDVSSIKEAARRWAAKR 164


>gi|124268095|ref|YP_001022099.1| oligoribonuclease [Methylibium petroleiphilum PM1]
 gi|124260870|gb|ABM95864.1| putative oligoribonuclease protein [Methylibium petroleiphilum PM1]
          Length = 191

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 23/172 (13%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY---SKTNRTFQVFLCPNGRK-NSPEA 59
           K++   I  D+E TGLD  NDRIIEI  V              F V              
Sbjct: 13  KSEQNLIWIDLEMTGLDPLNDRIIEIAVVVTDPGLTVRIEGPVFAVHQSDAVLDAMDAWN 72

Query: 60  LKLHG----ITD---EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
              HG    I       + +  +   +      +     +    ++   D  F+  ++  
Sbjct: 73  KGTHGRSGLIDRVKASTVDEAAAERQVIEFLKAYVPAGKSPMSGNSICQDRRFLAKDMPA 132

Query: 113 INKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +       +  + TL  +ARR  P+    L+   K           H AL D
Sbjct: 133 LETFFHYRNLDVSTLKELARRWKPAI---LDGFKKA--------QAHTALAD 173


>gi|154421722|ref|XP_001583874.1| exonuclease family protein [Trichomonas vaginalis G3]
 gi|121918118|gb|EAY22888.1| exonuclease family protein [Trichomonas vaginalis G3]
          Length = 508

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 72/218 (33%), Gaps = 27/218 (12%)

Query: 5   NKMRKIVFD---IETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           N  + I  D   IETT  D +K+D +  +  V        +  F           S    
Sbjct: 189 NANKVIALDCEMIETTSEDGAKHDELARLSVVNEKGEVIIDEYF-----KPIHPVSDLRT 243

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            + GIT E L +    S           ++    + H  + D   +           L  
Sbjct: 244 HVSGITQEHLDNAKLTSEDGVSALSAVADKETIIVGHGLENDFKALL----------LFH 293

Query: 121 SRIIDTLSI----ARRKHPSSRNDLNSLCKRY--GITISHRSKHGALLDSHLLSDVYIKM 174
           ++++DT  I        +P     L++L ++Y           H ++ D+    ++  K 
Sbjct: 294 TKVVDTSLIYNNERGVTYPRKP-KLSNLFQKYFKKEMRDQTKPHDSIDDARAALEL-SKF 351

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
            +  +  N          F    K V +I +L  ++ +
Sbjct: 352 CLNHAVSNVPIPPKIPDMFSSLLKAVTSIDVLAHERMI 389


>gi|299066912|emb|CBJ38107.1| oligoribonuclease [Ralstonia solanacearum CMR15]
          Length = 219

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 29/175 (16%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K+    +  D+E TGL  +NDRIIE+  V             V +     +        +
Sbjct: 25  KSDNNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQPDELLDGMDAWN 84

Query: 64  -------GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAELQR 112
                  G+ D+      + +   ++  DF      +  +    ++   D  F+   + +
Sbjct: 85  KGTHGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPK 144

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           +  +     R +D             + L  LCKR+   I+     R +H A  D
Sbjct: 145 L--EAYFHYRNLDV------------STLKELCKRWQPAIAKGFIKRQQHTAYAD 185


>gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
 gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
 gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
          Length = 897

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 32/141 (22%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET GLD    R++  G    +D  +    +     P+ R                
Sbjct: 329 VAVDTETDGLDPLTCRLV--GVSFAVDEGR--ACYVPLAAPDVRPLP------------- 371

Query: 70  LKDKPSFSSIFSEFWD-FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                  + +  E             +  N KFD   +     R            DT+ 
Sbjct: 372 -------ADVVREVLSPLLVSTEVVKVGQNLKFDYHVLRRWGVR------PEGPFFDTMV 418

Query: 129 IARRKHPS-SRNDLNSLCKRY 148
            A        R +L+ L ++Y
Sbjct: 419 AAWLLESDAGRYNLDRLAEKY 439


>gi|114053209|ref|NP_001039682.1| interferon-stimulated 20 kDa exonuclease-like 2 [Bos taurus]
 gi|122138204|sp|Q2YDK1|I20L2_BOVIN RecName: Full=Interferon-stimulated 20 kDa exonuclease-like 2
 gi|82571784|gb|AAI10187.1| Interferon stimulated exonuclease gene 20kDa-like 2 [Bos taurus]
 gi|296489681|gb|DAA31794.1| interferon-stimulated 20 kDa exonuclease-like 2 [Bos taurus]
          Length = 349

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 62/186 (33%), Gaps = 13/186 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   K   +  +    +++Y   +  +  ++ P          +  GI  
Sbjct: 174 KMVAIDCEMVGTGPKGH-VSSLARCSIVNYDG-DVLYDEYILPPCHIVDYR-TRWSGIRK 230

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +   F    ++       +    + H    D   +      I+   L        L
Sbjct: 231 QHMVNATPFKIARNQILKILAGK--IVVGHAIHNDFKALQY----IHPKSLTRDTSHIPL 284

Query: 128 SIARRKHPSSRN-DLNSLCKRY-GITI-SHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
              +   P +    L SL K+     I + +S H ++ D+    ++Y K++    + +  
Sbjct: 285 LNRKADCPENATMSLKSLTKKLLNRDIQAGKSGHSSVEDAQATMELY-KLVEVEWEQHLA 343

Query: 185 FKTNED 190
               +D
Sbjct: 344 QNPPKD 349


>gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1]
 gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1]
          Length = 943

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 74/207 (35%), Gaps = 61/207 (29%)

Query: 1   MIRKNKMRK--IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           M+ +  +++  + FD ETTGL +    ++ I                 ++          
Sbjct: 361 MLLQKLLKQQSVCFDTETTGLKALEVELVGIAFSWEKGKG-------YYV---------- 403

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                     F +D+   ++I  EF  FF     E +  N K+D+  ++      N D  
Sbjct: 404 ---------AFPEDQSETTAILEEFRPFFESTTIEKVGQNLKYDIKVLS------NYDMP 448

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-----------------------GITISHR 155
              ++ DT+      +P  R++++ L + Y                        + +  +
Sbjct: 449 VKGQLFDTMIAHYLINPDMRHNMDVLSETYLNYQPVSIVELIGKKGKNQLSMRQVPLEQQ 508

Query: 156 SKHGALLDSHLLSDV---YIKMMVGGS 179
           +++ A+ D+ +   +   +IK +  G 
Sbjct: 509 TEY-AVEDADITYQLKEHFIKELESGH 534


>gi|167463214|ref|ZP_02328303.1| hypothetical protein Plarl_11736 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 123

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 11/115 (9%)

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126
            + D PS+  ++++       +      +NA FD   I    +R N    P +   I+ T
Sbjct: 1   MVADAPSWPEVWAQVQKLLTGKTMLI--YNADFDTRMIRNNCKRHNLSYIPFESFCIMQT 58

Query: 127 LS-----IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            +      ++ +   +   L      Y   I     H A  D    + +  +++ 
Sbjct: 59  YAEFVGSYSKDQRDFTWVGLVDAA--YDQDIQIIGSHRAKADCITCARIINRIVA 111


>gi|21231607|ref|NP_637524.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768271|ref|YP_243033.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. 8004]
 gi|23821916|sp|Q8P8S1|ORN_XANCP RecName: Full=Oligoribonuclease
 gi|81305754|sp|Q4UVB0|ORN_XANC8 RecName: Full=Oligoribonuclease
 gi|21113297|gb|AAM41448.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573603|gb|AAY49013.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. 8004]
          Length = 194

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 29/173 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-------DYSK--TNRTFQVF-----LCPNGR 53
           R I  D+E TGLD+  D IIEI  +          +  +     + +          N  
Sbjct: 10  RLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQH 69

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           + S    ++    D  +    + +   +   ++     +    ++   D  F++ ++ R+
Sbjct: 70  RRSGLWQRV---LDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMSRL 126

Query: 114 NKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            +     +  + T+  +ARR  P+  +             +  S H AL D  
Sbjct: 127 ERYFHYRNLDVSTIKELARRWAPAVASG-----------FAKSSAHTALSDVR 168


>gi|317157161|ref|XP_001826260.2| exonuclease [Aspergillus oryzae RIB40]
          Length = 512

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 71/215 (33%), Gaps = 18/215 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D E   +      +  + AV+ L           ++ P G+       ++ GIT 
Sbjct: 238 RAVVIDCEMVQVRRWQREVAFLSAVDFLTGEVLINN---YVRPTGKVTD-WTTRISGITP 293

Query: 68  EFLKDKPSFSSIF-------SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
             + +  +             E + + + Q    I H    D+  +     R+    +  
Sbjct: 294 AAMAEAVARGQALNGWQSARQELYKYIDSQ-TILIGHALNSDLDVLGIYHSRVVDSVILA 352

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRY-GITI-SHRSKHGALLDSHLLSDVYIKMMVGG 178
           S  +  LS A ++       L +L + +  + I S    H  L D+    DV +  +   
Sbjct: 353 SEAVFGLSSAFKRL----YSLKTLSEVFLKLQIQSDNHPHVCLEDTLATRDVVLSFLRNP 408

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
             +       +  +  E+K+        K +K   
Sbjct: 409 EGLGVWAGNAKANYDAEQKQREARRRQKKNEKAKI 443


>gi|238493423|ref|XP_002377948.1| exonuclease, putative [Aspergillus flavus NRRL3357]
 gi|220696442|gb|EED52784.1| exonuclease, putative [Aspergillus flavus NRRL3357]
          Length = 512

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 71/215 (33%), Gaps = 18/215 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +V D E   +      +  + AV+ L           ++ P G+       ++ GIT 
Sbjct: 238 RAVVIDCEMVQVRRWQREVAFLSAVDFLTGEVLINN---YVRPTGKVTD-WTTRISGITP 293

Query: 68  EFLKDKPSFSSIF-------SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
             + +  +             E + + + Q    I H    D+  +     R+    +  
Sbjct: 294 AAMAEAVARGQALNGWQSARQELYKYIDSQ-TILIGHALNSDLDVLGIYHSRVVDSVILA 352

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRY-GITI-SHRSKHGALLDSHLLSDVYIKMMVGG 178
           S  +  LS A ++       L +L + +  + I S    H  L D+    DV +  +   
Sbjct: 353 SEAVFGLSSAFKRL----YSLKTLSEVFLKLQIQSDNHPHVCLEDTLATRDVVLSFLRNP 408

Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
             +       +  +  E+K+        K +K   
Sbjct: 409 EGLGVWAGNAKANYDAEQKQREARRRQKKNEKAKI 443


>gi|330802757|ref|XP_003289380.1| hypothetical protein DICPUDRAFT_56059 [Dictyostelium purpureum]
 gi|325080536|gb|EGC34087.1| hypothetical protein DICPUDRAFT_56059 [Dictyostelium purpureum]
          Length = 187

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 56/173 (32%), Gaps = 26/173 (15%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL----CPNGRKNSPEAL 60
              R +  D+E TGLD   D I+E+  +               +           +   +
Sbjct: 10  RSQRIVWVDLEMTGLDITKDCILEMACIITDSELNIIEKGPELVIHRSNEVLESMNSWCI 69

Query: 61  KLH---GITDEFLKDKPSFSSIFSEFWDFF----NEQNAEWIAHNAKFDVGFINAELQRI 113
             H   G+TD     K +      E ++F      ++ A    ++   D  F+  E+   
Sbjct: 70  DHHGKSGLTDRVKNSKITIEEAQLEMFNFIEKHVGKEQAPLAGNSVYQDRKFLEKEMPLF 129

Query: 114 NKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           N       RIID  SI   ARR +P+                     H AL D
Sbjct: 130 NNHL--HYRIIDVSSIKELARRWYPTE----------LKKAPKKEGSHRALKD 170


>gi|294659572|ref|XP_461965.2| DEHA2G09636p [Debaryomyces hansenii CBS767]
 gi|218511806|sp|Q6BIK6|REXO4_DEBHA RecName: Full=RNA exonuclease 4
 gi|199434067|emb|CAG90433.2| DEHA2G09636p [Debaryomyces hansenii]
          Length = 272

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 57/173 (32%), Gaps = 19/173 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61
           +K   + +  D E  G+  +      +  V +++ Y  T   F  F+ P  R        
Sbjct: 93  KKEPGKYLAMDCEFVGVGPEGTE-SALARVSIVNFYGHTV--FDKFVKPRERVTDWR-TW 148

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG--FINAELQRINKDPLD 119
           + G+T + + +  SF    +E       +    + H    D+   F++    RI      
Sbjct: 149 VSGVTPKHMNEAISFQEAQNETSKLL--EGRILVGHAIHHDLDALFLSHPKSRI------ 200

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVY 171
             R        R         L  L   +  I I   S H ++ D+     ++
Sbjct: 201 --RDTSQYKPFRSISMGKTPSLKKLSSHFLKIDI-QGSAHSSVEDARATMLLF 250


>gi|297697381|ref|XP_002825836.1| PREDICTED: interferon-stimulated gene 20 kDa protein-like isoform 1
           [Pongo abelii]
 gi|297697383|ref|XP_002825837.1| PREDICTED: interferon-stimulated gene 20 kDa protein-like isoform 2
           [Pongo abelii]
 gi|297697385|ref|XP_002825838.1| PREDICTED: interferon-stimulated gene 20 kDa protein-like isoform 3
           [Pongo abelii]
 gi|297697387|ref|XP_002825839.1| PREDICTED: interferon-stimulated gene 20 kDa protein-like isoform 4
           [Pongo abelii]
          Length = 181

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 15/167 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D E  GL     R   +    L++ +      +  F+ P G        ++ G+T +
Sbjct: 8   VAMDCEMVGLGP--HRESGLARCSLVNVHGAVL--YDKFIRPEGEITDYR-TRVSGVTPQ 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     F+    E       +    + H+ K D   +  ++        D S  +    
Sbjct: 63  HMVGATPFAVARLEILQLL--KGKLVVGHDLKHDFQALKEDMS--GYTIYDTSTDMLLWR 118

Query: 129 IARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYI 172
            A+  H   R  L  L +R     I  S    H ++ D+    ++Y 
Sbjct: 119 EAKLDH-CRRVSLRVLSERLLHKSIQNSLLG-HSSVEDARATMELYQ 163


>gi|34497823|ref|NP_902038.1| oligoribonuclease [Chromobacterium violaceum ATCC 12472]
 gi|41017434|sp|Q7NVH5|ORN_CHRVO RecName: Full=Oligoribonuclease
 gi|34103679|gb|AAQ60040.1| oligoribonuclease protein [Chromobacterium violaceum ATCC 12472]
          Length = 181

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 39/172 (22%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---------KL 62
            D+E TGL+   DRIIE+  +                 P    + P+A+           
Sbjct: 11  LDMEMTGLNPDQDRIIEVAMIVTDSNLNVLAES-----PVLVIHQPDAILDGMDDWNKNT 65

Query: 63  HGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           HG +       +  + +  +   +         E+      +    D  F+   + ++  
Sbjct: 66  HGKSGLIEKVKNSTVSEAEAEQLLLEFMMQHVPERATPMCGNTIHQDRRFMARWMPKL-- 123

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           +     R +D             + L  LCKR+   I+     R KH AL D
Sbjct: 124 EAYFHYRNLDV------------STLKELCKRWRPEIAKGVVKRGKHEALAD 163


>gi|311696704|gb|ADP99577.1| conserved hypothetical protein [marine bacterium HP15]
          Length = 177

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 64/182 (35%), Gaps = 27/182 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNG--RKNSPEALKLHGI 65
               D E + LD      IE+G          + T   + + P+   +  S  A ++HGI
Sbjct: 6   PAFIDFEASSLDLIASYPIEVGICMP------DGTLHSWLISPHVLWQDWSQSAEQIHGI 59

Query: 66  TDEFL-KDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           + E L  D  + S + S   +   EQ   +A        FD  +++   +     P    
Sbjct: 60  SRETLEADGIAVSEVASALNELLPEQVFCDA------WTFDSFWLHRLFKAARITPTFQL 113

Query: 122 RIIDTLSIARRKHPSSRNDL-NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             I  L   R+      + L   +    G+ +     H A  D+ +L   + ++     +
Sbjct: 114 ESISALLDTRQV--REWSALRQQVITELGLPV-----HRAANDALILHKTWERIAPNQDE 166

Query: 181 IN 182
           + 
Sbjct: 167 LA 168


>gi|323304769|gb|EGA58529.1| Rnh70p [Saccharomyces cerevisiae FostersB]
          Length = 364

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE-- 68
             D E   L  +   +  I  V   +       ++  + P+         +  GIT+E  
Sbjct: 176 ALDCEMC-LSEQGLVLTRISLVNFDNEVI----YEELVKPD-VPIVDYLTRYSGITEEKL 229

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  K +   +  +     +  +   I H+ + D+  +           L    ++DT  
Sbjct: 230 TVGAKKTLREVQKDLLKIISRSD-ILIGHSLQNDLKVMK----------LKHPLVVDTAI 278

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-IKMMVGGSQINFGFK 186
           I   K     +  L  L + +        +H ++ D+    ++  +K++ G   + FG  
Sbjct: 279 IYHHKAGDPFKPSLKYLSETFLNKSIQNGEHDSVEDARACLELTKLKILNG---LAFGIG 335

Query: 187 TNEDRFFKEEKK 198
            N +  F +  +
Sbjct: 336 INTENLFTKLHR 347


>gi|146415472|ref|XP_001483706.1| hypothetical protein PGUG_04435 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 528

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 13/101 (12%)

Query: 9   KIVFDIETTG------LDSKNDRIIEI--GAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            +V +  TT       +   +  +I I    V+     +  R  Q F+ P     +P   
Sbjct: 5   YVVVNTATTCDETNSYVTPDSTELILISWCIVDASTLQELTRN-QTFVRPTNTPITPWCT 63

Query: 61  KLHGITDEFLKDKPSFSSIFSEF----WDFFNEQNAEWIAH 97
           ++HGI+ E +++  +F     +      ++  E+   ++++
Sbjct: 64  QIHGISWEHVRNAGTFRDAIDKLEAAVKEYVGEKEFSFVSY 104


>gi|298241927|ref|ZP_06965734.1| Exonuclease [Ktedonobacter racemifer DSM 44963]
 gi|297554981|gb|EFH88845.1| Exonuclease [Ktedonobacter racemifer DSM 44963]
          Length = 255

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 11/165 (6%)

Query: 16  TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPS 75
           T GL        EI AV L+D +      +  +       S    + +G++   L   PS
Sbjct: 101 TAGLSHDA----EIIAVTLVDRA--GLPIKQLVVRPMNPISFARGETYGLSAAQLASAPS 154

Query: 76  FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHP 135
              ++       + Q    ++    +D+  +     +++  PL   ++ D  +  R    
Sbjct: 155 LPEVWDHLAQ--SCQGRFLLSFQCDYDLARLAEAAAQLHLPPLCV-QMEDLRAHTRAYFG 211

Query: 136 SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
                L+ LC+R GIT+        L  +     V   M   G +
Sbjct: 212 ELGLRLSDLCQRCGITLPPTP--NPLQCAQAFHAVLCAMAHAGGE 254


>gi|294852082|ref|ZP_06792755.1| hypothetical protein BAZG_00998 [Brucella sp. NVSL 07-0026]
 gi|294820671|gb|EFG37670.1| hypothetical protein BAZG_00998 [Brucella sp. NVSL 07-0026]
          Length = 138

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 9/132 (6%)

Query: 54  KNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            + P    L GIT+E + +D     +  ++   F     A + +     ++  I      
Sbjct: 2   PSPPYFTDLTGITEEQISRDGKPLKTALNDLDSF--SDGATFWSWGKD-ELNMIAISCYV 58

Query: 113 INKDPLDPSRIID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
               P  P+   D      L+        +R   N L   YG+       H AL D+  +
Sbjct: 59  EGIAPPIPAPRFDNAVKLLLAAGMPVEDLARTPSNKLADYYGLEHPELQGHDALDDARSI 118

Query: 168 SDVYIKMMVGGS 179
                 ++  G 
Sbjct: 119 GYTLQYLLSSGK 130


>gi|288923313|ref|ZP_06417448.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
 gi|288345349|gb|EFC79743.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
          Length = 210

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 27/171 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS---PEALKLH 63
           R +  D E TGLD+ +D ++E+   V   + +  +    + L           P   ++H
Sbjct: 15  RLVWIDCEMTGLDAGSDLLLEVACLVTDSELNVLDEGIDLVLGAPDAALDQMLPVVKEMH 74

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQRINK 115
              G+T      +        +   +      + + A    ++   D  FI   L ++  
Sbjct: 75  EASGLTTAVRASELKVDEAEKQLLAYIRRFVPDSRKAPLCGNSIATDRTFIARYLPQL-- 132

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           D     R+ID  SI   ARR +P            Y   +     H AL D
Sbjct: 133 DEFLHYRMIDVSSIKELARRWYPR---------AYYAAPVKAGG-HRALAD 173


>gi|294102555|ref|YP_003554413.1| hypothetical protein Amico_1573 [Aminobacterium colombiense DSM
           12261]
 gi|293617535|gb|ADE57689.1| hypothetical protein Amico_1573 [Aminobacterium colombiense DSM
           12261]
          Length = 263

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 22/151 (14%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   VFD+ET GL  K   ++   ++   D       F  F  P          K+HG+T
Sbjct: 1   MNFAVFDLETNGL--KGSSVVSASSIVFDDRGHIRDFFNRFYFPTETP-DYATEKIHGLT 57

Query: 67  DE----FLKDKP---SFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPL 118
            E    F + +P    F         F+ +   +  + HN  FD  F+        ++ +
Sbjct: 58  VERIHWFRQTEPYPLYFLEDVDALLSFWKKWHVSGIVVHNLAFDTSFLP-------RETV 110

Query: 119 DPSRIIDTL--SIARRKHPSSRNDLNSLCKR 147
              +   ++         P+ +N   +L K 
Sbjct: 111 KDWKWWCSMIGLTNWCAIPNPKN--AALYKW 139


>gi|313902541|ref|ZP_07835942.1| 3'-5' exonuclease, PolB [Thermaerobacter subterraneus DSM 13965]
 gi|313467227|gb|EFR62740.1| 3'-5' exonuclease, PolB [Thermaerobacter subterraneus DSM 13965]
          Length = 266

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 53/189 (28%), Gaps = 43/189 (22%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-----PEALKLHGITDEFLKD 72
           GL     R++ I      +           +             PEA          L  
Sbjct: 47  GLHPGTGRVVAIALWRPYEDRGGV-----LVEDPAATAPRWAPFPEAGA------GALIY 95

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDP--------LDPSRI 123
           + S   I +EFW + ++     I  N + FD  F+      +   P              
Sbjct: 96  RGSERDILTEFWRYVSQHAGTLITFNGRSFDGPFLMIRSAILGVVPTRNLVPYRYSFQDH 155

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA------------------LLDSH 165
            D   +        RN     C ++GI    ++  GA                  L D+ 
Sbjct: 156 CDLAEVLSFYGARQRNSFLFWCHQFGIPSPKQAMDGAEVGEAYRQGRIDDIARYCLADAR 215

Query: 166 LLSDVYIKM 174
             +++Y ++
Sbjct: 216 ATAELYRRL 224


>gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
 gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
          Length = 957

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 24/143 (16%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + +I  D+ETTGLD   D I+         + +  R   +          P ++ L G  
Sbjct: 374 LTQICIDLETTGLDPLRDEIVGWAIAWAAQHGQPGRAVYL-----PVLGPPGSVLLDG-- 426

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                     +++             + I  N KFD+  +    +++   P      +DT
Sbjct: 427 ----------TAVVQTLKPILENPQCQLINQNVKFDLLAM----RKVGIRPATIG--LDT 470

Query: 127 LSIARRKHPSSR-NDLNSLCKRY 148
           +         +R ++L  L ++Y
Sbjct: 471 MVGDYLLDAGARSHNLEVLGQKY 493


>gi|109082291|ref|XP_001090239.1| PREDICTED: interferon-stimulated gene 20 kDa protein isoform 3
           [Macaca mulatta]
 gi|297297177|ref|XP_002804978.1| PREDICTED: interferon-stimulated gene 20 kDa protein [Macaca
           mulatta]
 gi|297297180|ref|XP_001089541.2| PREDICTED: interferon-stimulated gene 20 kDa protein isoform 1
           [Macaca mulatta]
          Length = 181

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 17/168 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D E  G+     R   +    L++ +      +  F+ P G        ++ G+T +
Sbjct: 8   VAMDCEMVGMGP--HRESGLARCSLVNVHGAVL--YDKFIRPEGEITDYR-TRVSGVTPQ 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     F+    E       +    + H+ K D   +  ++ R            D L 
Sbjct: 63  HMVGATPFAVARLEILQLL--KGKLVVGHDLKHDFQALKEDMSRYTI----YDTSTDMLL 116

Query: 129 IARRKHPSSRN-DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYI 172
               K    R   L  L +R     I  S    H ++ D+    ++Y 
Sbjct: 117 WREAKLDHCRRVSLRVLSERLLHKSIQNSLLG-HSSVEDAKATMELYQ 163


>gi|330946499|gb|EGH47535.1| exonuclease [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 137

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 9  KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLH 63
           +V D+E T    G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4  WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPLLTHFCRELT 63

Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
           I    +      ++++ +F  + +   A  + 
Sbjct: 64 HINQSSIDSAAPLTTVWPQFERWLSHHRARIVG 96


>gi|301062352|ref|ZP_07203015.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
 gi|300443556|gb|EFK07658.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
          Length = 893

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 32/150 (21%)

Query: 4   KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            + MR    +  D ETTG D     ++ +         K  + F + +  +      +  
Sbjct: 308 ADDMRSAGLLAIDTETTGTDPMRADLVGVSFC-----LKEGKAFYLPVGHHYLGVPAQVS 362

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLD 119
                        P    +  +  +     +A   +  N K+D   +    +R       
Sbjct: 363 W------------PDARDVLKDVLE----DDAVLKVGQNIKYDACVL----KRHGVSL-- 400

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRY 148
                DT+  +   +P  R ++L++L +RY
Sbjct: 401 SGISFDTMIASYVINPGLRQHNLDALAQRY 430


>gi|172041073|ref|YP_001800787.1| oligoribonuclease [Corynebacterium urealyticum DSM 7109]
 gi|171852377|emb|CAQ05353.1| putative oligoribonuclease [Corynebacterium urealyticum DSM 7109]
          Length = 209

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 27/171 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC---PNGRKNSPEALKLH 63
           R +  D E TGLD     ++EI  +    +    +    + +        +       +H
Sbjct: 12  RIVWADCEMTGLDPDRHVLVEIAVIVTDAELRPLDEGIDLVIHATEDELAEMDDFVQNMH 71

Query: 64  -------GITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINK 115
                   I +  L    +   +      +   E+ A    ++   D  FI   + ++  
Sbjct: 72  ARSGLTEQIRESTLSLAEAEQQVLEYVQRYVEVERAAPLAGNSIGTDRRFIAKYMPKL-- 129

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           D     R+ID  SI   ARR +P          K Y         H AL D
Sbjct: 130 DEFLHYRMIDVSSIKELARRWYP----------KVYAGQPQKGLSHRALAD 170


>gi|319944217|ref|ZP_08018493.1| oligoribonuclease [Lautropia mirabilis ATCC 51599]
 gi|319742512|gb|EFV94923.1| oligoribonuclease [Lautropia mirabilis ATCC 51599]
          Length = 236

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 41/182 (22%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEAL- 60
           R ++ R +  D+E TGL    DRIIE+  V       T+    +    P    + P+ + 
Sbjct: 51  RPDESRLVWLDMEMTGLHPDIDRIIEVAMV------VTDSELNLLAEGPVLAIHQPDTVL 104

Query: 61  --------KLHG----ITDEFLKDKPSFSSIFSE--FWDFFN----EQNAEWIAHNAKFD 102
                     HG    I  + ++   + +   ++    +F      E  +    ++   D
Sbjct: 105 DAMDKWNQSTHGKSGLI--DRVR-ASTLTEAAAQGILLEFIRAWAPEGKSPMCGNSIGQD 161

Query: 103 VGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
             F+   +  +       +  + TL  +ARR  P                   R  H AL
Sbjct: 162 RRFMARYMPELESWFHYRNLDVSTLKELARRWAPEVYRS-----------FKKRGAHTAL 210

Query: 162 LD 163
            D
Sbjct: 211 AD 212


>gi|256832144|ref|YP_003160871.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans
           DSM 20603]
 gi|256685675|gb|ACV08568.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans
           DSM 20603]
          Length = 222

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 61/179 (34%), Gaps = 29/179 (16%)

Query: 1   MIRKNKMRKIV-FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-- 56
           M        IV  D E TGLD   D +IEI A+    + +  +    + + P     +  
Sbjct: 1   MTNSAPTHPIVWIDCEMTGLDITQDALIEIAAIVTDSELNPLDEGIDLVIKPPTEALTTM 60

Query: 57  -PEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFIN 107
                 +H   G+ +E L D  +          +        + A    ++   D  F+N
Sbjct: 61  GDFVRTMHTRSGLLNE-LDDGLTLEDAEQRVLRYVKKHSPVARKAPLAGNSVGTDRLFLN 119

Query: 108 AELQRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++  +        RIID  S+   ARR +P +          Y         H AL D
Sbjct: 120 RDMPALTAHL--HYRIIDVSSMKELARRWYPRT----------YYAAPGKNGGHRALAD 166


>gi|111115375|ref|YP_709993.1| DNA polymerase I [Borrelia afzelii PKo]
 gi|110890649|gb|ABH01817.1| DNA polymerase I [Borrelia afzelii PKo]
          Length = 889

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 52/145 (35%), Gaps = 34/145 (23%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + I  D ET+ LD    R+I I             +F+ F    G     EA      
Sbjct: 320 KAKYISIDTETSSLDIYTARLIGISI-----------SFKEF---EGYYIPIEA------ 359

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                K K       I  +F + F E N + I  N KFD   +          P+ P   
Sbjct: 360 -----KGKIYIEKHYIIQKFNNLF-ESNPKIIGQNYKFDYKILKNN----GFSPIPP--Y 407

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
            DT+  A     +S+  L+ L ++Y
Sbjct: 408 FDTMIAAYLIDTNSKVSLDFLAEKY 432


>gi|58269472|ref|XP_571892.1| hypothetical protein CNG01700 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134114159|ref|XP_774327.1| hypothetical protein CNBG3080 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256962|gb|EAL19680.1| hypothetical protein CNBG3080 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57228128|gb|AAW44585.1| hypothetical protein CNG01700 [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 179

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 46/146 (31%), Gaps = 10/146 (6%)

Query: 29  IGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFN 88
           IG V+           + F+  +         +  GI  + L   P++  I  +  +   
Sbjct: 13  IGIVDAYGNVL----MESFVRHHPANVVNYVTRKSGIRPQDLVGAPTYEQIQPQIIELIK 68

Query: 89  EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR- 147
           ++    I H    D+  I    Q            + TL   R +       L  L    
Sbjct: 69  DK--IVIGHTLFNDLAVIGHRHQYEMMRDTALYYPLRTLVGVRSE--GVWPSLRKLAAAV 124

Query: 148 YGITI-SHRSKHGALLDSHLLSDVYI 172
             + + +  + H  + D+ +   +++
Sbjct: 125 LNMEMHAAGTAHDPVEDARMTMAIFM 150


>gi|147905436|ref|NP_001089548.1| interferon stimulated exonuclease gene 20kDa-like 2 [Xenopus
           laevis]
 gi|66911600|gb|AAH97861.1| MGC115620 protein [Xenopus laevis]
          Length = 369

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 22/172 (12%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G    N R  ++    ++++   +  +  ++ P     +    +  GI  
Sbjct: 194 KAVAIDCEMVGTGP-NGRNSDLARCSIVNWFG-DVMYDKYIKPKS-PVTDYRTRWSGIRR 250

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT- 126
           E L +   F     E     N      + H    D   +N         P + +R  DT 
Sbjct: 251 EHLVNAIPFVVAQKEILKILN--GKVVVGHAIHNDYKALNYFH------PKEMTR--DTS 300

Query: 127 ---LSIARRKHPSSR-NDLNSLCKRY---GITISHRSKHGALLDSHLLSDVY 171
              L   +   P      L  L K+     I  + R  H ++ D+    ++Y
Sbjct: 301 KIPLLNHKAGFPEKEAASLKRLAKQLLHKDIQ-TGRQGHSSVEDAKTTMELY 351


>gi|220912933|ref|YP_002488242.1| oligoribonuclease [Arthrobacter chlorophenolicus A6]
 gi|219859811|gb|ACL40153.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
          Length = 208

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 68/183 (37%), Gaps = 39/183 (21%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M   N+ R +  D E TGLD KND +IE+ A V   + +       V + P+    +   
Sbjct: 1   MPITNE-RIVWIDCEMTGLDIKNDALIEVAALVTDSELNILGEGVDVVIKPDDAAVAQM- 58

Query: 60  LKLHGITDEFLKD-----------------KPSFSSIFSEFWDFFNE-QNAEWIAHNAKF 101
                  ++F++D                   + +++     ++  E + A    ++   
Sbjct: 59  -------NDFVRDMHTKSGLLKELPSGKTMAEAEAAVMEYIAEWVPEPRKAPLGGNSVGT 111

Query: 102 DVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
           D  F++ ++  I +        + T+  ++RR             + Y  + + +  H A
Sbjct: 112 DRVFLSRDMPAIVEHLHYRVIDVSTIKELSRRWF----------ARAYFQSPAKKGGHRA 161

Query: 161 LLD 163
           L D
Sbjct: 162 LGD 164


>gi|83955220|ref|ZP_00963875.1| hypothetical protein NAS141_16259 [Sulfitobacter sp. NAS-14.1]
 gi|83840213|gb|EAP79387.1| hypothetical protein NAS141_16259 [Sulfitobacter sp. NAS-14.1]
          Length = 190

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 9/126 (7%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----SPEALKLHG 64
               D E +    ++   IEIG   L +     +T+   + P  R +    S ++  +HG
Sbjct: 17  YAALDFEASSFTPQS-WPIEIGLSWLKNGG--VQTWTSLIRPAARWSFSDWSTQSGAVHG 73

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I  E L D P+ S++  +       +    ++   +FD  +++  L+      +      
Sbjct: 74  IVFEGLLDAPTVSAVVEDLLPLL--EGKIPVSDAPEFDRRWLSRLLRASGHAAMPKIEDY 131

Query: 125 DTLSIA 130
             +S A
Sbjct: 132 HDVSFA 137


>gi|332299433|ref|YP_004441354.1| Exonuclease [Porphyromonas asaccharolytica DSM 20707]
 gi|332176496|gb|AEE12186.1| Exonuclease [Porphyromonas asaccharolytica DSM 20707]
          Length = 263

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 37/197 (18%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL------------LDYSKTNRTFQVFLCPNGRKN 55
           R +V D ET           ++ A++              +         + L  +G   
Sbjct: 64  RYLVVDTETVCYLHDTLDETQLSAIDTPLLASLSWLLLDEELRVVRSEDHLLL--SGMPI 121

Query: 56  SPEALKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           + EA   H +T EF+        ++   F           + H+  F +  +  +LQ   
Sbjct: 122 TSEATDYHQLTTEFVAGHGEPPQAVLELFLRDLETTQM-IVGHSLAFHLAVLAHDLQHYQ 180

Query: 115 K--DPLDPSRIIDTLSI-------ARRKHP-SSRNDLNSLCKR-------YGITISHRSK 157
              + L   R   T+           +  P  +R  L +L  +         I    +S+
Sbjct: 181 LPSESLRSKRSFCTMRQGINYLILHYQADPLQTRISLETLYSKLLWGREDLEIIYQLKSR 240

Query: 158 HGALLDSHLLSDVYIKM 174
           H    D  L +  +IK+
Sbjct: 241 H----DVVLATHCFIKL 253


>gi|255326016|ref|ZP_05367104.1| oligoribonuclease [Rothia mucilaginosa ATCC 25296]
 gi|255296907|gb|EET76236.1| oligoribonuclease [Rothia mucilaginosa ATCC 25296]
          Length = 228

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 28/173 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK------ 61
           R +  D E TGLD +ND ++E+G +          +   F+   G ++   AL+      
Sbjct: 7   RIVWIDCEMTGLDVENDALVEVGVLVTDADLNILGSGVEFVIKPGDESPAGALENMNDFV 66

Query: 62  --LH---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQ 111
             +H   G+    ++   S      +   +          A+   ++   D  F+   + 
Sbjct: 67  RSMHEASGLLP-DIEHGVSMDYAQEQVLRYIKKYVPVAGKAQLGGNSVGMDKRFLERYMP 125

Query: 112 RINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +          + T+  +A R +P++R+             +    H AL D
Sbjct: 126 EVMAHLHYRVIDVSTIKELASRWYPAARHS----------APAKTGNHRALGD 168


>gi|57012974|sp|Q9JL16|ISG20_MOUSE RecName: Full=Interferon-stimulated gene 20 kDa protein; AltName:
           Full=Promyelocytic leukemia nuclear body-associated
           protein ISG20; AltName: Full=Protein DnaQL
 gi|7329148|gb|AAF59917.1|AF217484_1 DnaQL [Mus musculus]
 gi|148675133|gb|EDL07080.1| interferon-stimulated protein, isoform CRA_a [Mus musculus]
          Length = 300

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 11/140 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D E  GL  +  R+  +    +++ +      +  ++ P G        ++ G+T +
Sbjct: 8   VAMDCEMVGLGPQ--RVSGLARCSIVNIHGAVL--YDKYIRPEGEITDYR-TQVSGVTPQ 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     F     E       +    + H+ K D   +  ++ +         R    L 
Sbjct: 63  HMVRATPFGEARLEILQLL--KGKLVVGHDLKHDFNALKEDMSKYTIYDTSTDR---LLW 117

Query: 129 IARRKHPSSRNDLNSLCKRY 148
              +    SR  L  LCKR 
Sbjct: 118 HEAKLQYYSRVSLRLLCKRL 137


>gi|116670981|ref|YP_831914.1| oligoribonuclease [Arthrobacter sp. FB24]
 gi|116611090|gb|ABK03814.1| Exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24]
          Length = 211

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 66/176 (37%), Gaps = 25/176 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG---RKNS 56
           M   N+ R +  D E TGLD KND +IE+ A V   + +       V + P+     + +
Sbjct: 1   MPITNE-RIVWIDCEMTGLDIKNDALIEVAALVTDSELNILGDGVDVVIRPDDAALAQMN 59

Query: 57  PEALKLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINA 108
                +H   G+ DE L    + +   +   ++      + + A    ++   D  F+  
Sbjct: 60  DFVRDMHTRSGLLDE-LPHGKTMAEAEAVIMEYIAKWVPDPRKAPLGGNSVGTDRVFLAR 118

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++  + +        + T+  ++RR             + Y    +    H AL D
Sbjct: 119 DMPAVVEHLHYRVIDVSTIKELSRRWF----------ARAYFQAPAKHGGHRALGD 164


>gi|323348508|gb|EGA82753.1| Rnh70p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 478

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE-- 68
             D E   L  +   +  I  V   +       ++  + P+         +  GIT+E  
Sbjct: 227 ALDCEMC-LSEQGLVLTRISLVNFDNEVI----YEELVKPD-VPIVDYLTRYSGITEEKL 280

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  K +   +  +     +  +   I H+ + D+  +           L    ++DT  
Sbjct: 281 TVGAKKTLREVQKDLLKIISRSD-ILIGHSLQNDLKVMK----------LKHPLVVDTAI 329

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-IKMMVGGSQINFGFK 186
           I   K     +  L  L + +        +H ++ D+    ++  +K++ G   + FG  
Sbjct: 330 IYHHKAGDPFKPSLKYLSETFLNKSIQNGEHDSVEDARACLELTKLKILNG---LAFGIG 386

Query: 187 TNEDRFFKEEKK 198
            N +  F +  +
Sbjct: 387 INTENLFTKLHR 398


>gi|118443205|ref|YP_877670.1| hypothetical protein NT01CX_1589 [Clostridium novyi NT]
 gi|118133661|gb|ABK60705.1| conserved protein [Clostridium novyi NT]
          Length = 265

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 59/160 (36%), Gaps = 37/160 (23%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +   + FDIETTG D + ++++ I G   L D     + +              A  L  
Sbjct: 22  EDNILFFDIETTGFDKEKEKVVLISGGWFLQDKKFVIKQY-------------FAESL-- 66

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRI 123
             DE +        +   F +   + N+ W ++N   FD  FI   +   N +   P   
Sbjct: 67  --DEEV-------QVLKAFKEDVTKFNS-WCSYNGKAFDEPFIKKRMNINNIEFTPPREH 116

Query: 124 IDTLSIARRKHP---SSRNDLNSLCKRYGITISHRSKHGA 160
           ID   I R  +      R +L S+ K  GI       H A
Sbjct: 117 IDLYRIIRPYYKQLGMERCNLKSVEKYLGI-------HRA 149


>gi|296129190|ref|YP_003636440.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas flavigena
           DSM 20109]
 gi|296021005|gb|ADG74241.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas flavigena
           DSM 20109]
          Length = 229

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 61/176 (34%), Gaps = 28/176 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNG---RKNSPE 58
             +  R +  D E TGLD  +D ++E+ AV    + +       V + P      + +  
Sbjct: 20  HASNDRIVWVDCEMTGLDLVHDALVEVAAVVTDSELNVLGDGVDVVIAPPAEALAQMNDF 79

Query: 59  ALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAEL 110
              +H   G+  E L+   +     ++  ++          A    ++   D  F++  +
Sbjct: 80  VRSMHTTSGLLPE-LEHGVTLEEAEAQVLEYVRTWVPDVGKAPLAGNSVGTDKAFLDRHM 138

Query: 111 QRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                      RIID  SI   ARR +P          + Y         H AL D
Sbjct: 139 P--GLVGHLHYRIIDVSSIKELARRWYP----------RVYFAAPEKNGGHRALAD 182


>gi|79422951|ref|NP_189436.2| exonuclease/ nucleic acid binding / zinc ion binding [Arabidopsis
           thaliana]
 gi|193211503|gb|ACF16171.1| At3g27970 [Arabidopsis thaliana]
 gi|225898687|dbj|BAH30474.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643867|gb|AEE77388.1| exonuclease-like protein [Arabidopsis thaliana]
          Length = 357

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 42/151 (27%), Gaps = 36/151 (23%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF------------NEQN 91
           F  ++ P+    S    +  GI  E L+D      +  +  +F               + 
Sbjct: 168 FHTYVKPSMAVTSYR-YETTGIRPENLRDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKA 226

Query: 92  AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCK---- 146
              + H    D+  +  E           S I DT         S   N L  L +    
Sbjct: 227 RILVGHGLDHDLDRLQLEY--------PSSMIRDTAKYPPLMKTSKLSNSLKYLTQAYLG 278

Query: 147 ---RYGITISHRSKHGALLDSHLLSDVYIKM 174
               +GI   +        D      +Y +M
Sbjct: 279 YDVHFGIQDPYE-------DCVATMRLYTRM 302


>gi|45935039|gb|AAS79554.1| exonuclease family protein [Arabidopsis thaliana]
 gi|46367478|emb|CAG25865.1| hypothetical protein [Arabidopsis thaliana]
          Length = 357

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 42/151 (27%), Gaps = 36/151 (23%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF------------NEQN 91
           F  ++ P+    S    +  GI  E L+D      +  +  +F               + 
Sbjct: 168 FHTYVKPSMAVTSYR-YETTGIRPENLRDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKA 226

Query: 92  AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCK---- 146
              + H    D+  +  E           S I DT         S   N L  L +    
Sbjct: 227 RILVGHGLDHDLDRLQLEY--------PSSMIRDTAKYPPLMKTSKLSNSLKYLTQAYLG 278

Query: 147 ---RYGITISHRSKHGALLDSHLLSDVYIKM 174
               +GI   +        D      +Y +M
Sbjct: 279 YDVHFGIQDPYE-------DCVATMRLYTRM 302


>gi|9294313|dbj|BAB01484.1| exonuclease-like protein [Arabidopsis thaliana]
          Length = 353

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 42/151 (27%), Gaps = 36/151 (23%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF------------NEQN 91
           F  ++ P+    S    +  GI  E L+D      +  +  +F               + 
Sbjct: 164 FHTYVKPSMAVTSYR-YETTGIRPENLRDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKA 222

Query: 92  AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCK---- 146
              + H    D+  +  E           S I DT         S   N L  L +    
Sbjct: 223 RILVGHGLDHDLDRLQLEY--------PSSMIRDTAKYPPLMKTSKLSNSLKYLTQAYLG 274

Query: 147 ---RYGITISHRSKHGALLDSHLLSDVYIKM 174
               +GI   +        D      +Y +M
Sbjct: 275 YDVHFGIQDPYE-------DCVATMRLYTRM 298


>gi|283458223|ref|YP_003362841.1| oligoribonuclease [Rothia mucilaginosa DY-18]
 gi|283134256|dbj|BAI65021.1| oligoribonuclease [Rothia mucilaginosa DY-18]
          Length = 228

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 28/173 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK------ 61
           R +  D E TGLD +ND ++E+G +          +   F+   G ++   AL+      
Sbjct: 7   RIVWIDCEMTGLDVENDALVEVGVLVTDADLNILGSGVEFVIKPGDESPAGALENMNDFV 66

Query: 62  --LH---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQ 111
             +H   G+    ++   S      +   +          A+   ++   D  F+   + 
Sbjct: 67  RSMHEASGLLP-DIEHGVSMDYAQEQVLRYIKKYVPVAGKAQLGGNSVGMDKRFLERYMP 125

Query: 112 RINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +          + T+  +A R +P++R+             +    H AL D
Sbjct: 126 EVMAHLHYRVIDVSTIKELASRWYPAARHS----------APAKTGNHRALGD 168


>gi|301063709|ref|ZP_07204220.1| exonuclease [delta proteobacterium NaphS2]
 gi|300442182|gb|EFK06436.1| exonuclease [delta proteobacterium NaphS2]
          Length = 177

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 28/166 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYS---------KTNRTFQVF--LCPNGRKNSPEAL 60
            D+E TGLD ++  I+EI ++   D+            ++       + P   ++   + 
Sbjct: 8   IDLEMTGLDPEHHVIVEIASIVTDDHLSVLAEGPDIVIHQPESTLSAMEPWSLEHHQASG 67

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L  I       + +     S    F    ++    ++   D  F+   +  +  +    
Sbjct: 68  LLDRIKTSVYSTEQAEEETLSFIRQFCQRGHSPLCGNSICQDRRFLVKHMPTL--EAFFH 125

Query: 121 SRIIDTLSIA---RRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R ID  S+    +R +P+  +               +  H AL D
Sbjct: 126 YRNIDVSSVKELVKRWYPNLPH------------FEKQKTHLALSD 159


>gi|167821772|ref|ZP_02453452.1| 34L [Burkholderia pseudomallei 91]
          Length = 263

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++K     I  + W   ++ +   +A N  KFDV  INA    +   P  P R++DT+  
Sbjct: 62  RNKEDDRRIVRKLWKLLDQAD-IVVAQNGVKFDVRKINARFILLGMQPPSPFRVVDTMLE 120

Query: 130 ARRKHPSSRNDLNSLCKRY 148
           AR+    + N L  L  + 
Sbjct: 121 ARKHFGFTSNKLEWLTAKL 139


>gi|317035770|ref|XP_001396951.2| hypothetical protein ANI_1_1434134 [Aspergillus niger CBS 513.88]
          Length = 177

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 24/154 (15%)

Query: 36  DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFN-EQNA 92
           +++        +  P       P A+ + GIT +  + K  + ++  +     F   +  
Sbjct: 4   EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTC 63

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRI--------IDTLSIARRKHPSS------- 137
               +N +FD         R   DP   S          +D +       P         
Sbjct: 64  ILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEND 123

Query: 138 ----RNDLNSLCKRYGITISHRSKHGALLDSHLL 167
                  L  L K  GI   H + H A+ D +  
Sbjct: 124 DGLPSFRLEHLTKANGIE--HSNAHDAMADVYAT 155


>gi|302879370|ref|YP_003847934.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
 gi|302582159|gb|ADL56170.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
          Length = 181

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----SP 57
           + +N+   +  D+E TGL+   DRIIE+  V      +T     V +             
Sbjct: 1   MAQNQNHLVWIDMEMTGLNPDTDRIIEVAIVVTDSNLETIAEAPVLVVHQPDSIMDGMDA 60

Query: 58  EALKLHGITD--EFLKDKP-SFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAEL 110
                HG +   E +K    + +++ ++   F  E    + +    ++   D  F+   +
Sbjct: 61  WNKSTHGKSGLIERVKASTLNEAAVSAQMVAFLKEYVPIRTSPMCGNSICQDRRFMARWM 120

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
               +     +  + TL  +ARR  P        + K     +    KH AL D
Sbjct: 121 PEFEEYFHYRNLDVSTLKELARRWKP-------DMAK----GVKKHGKHEALAD 163


>gi|264677043|ref|YP_003276949.1| exonuclease, RNase T and DNA polymerase III [Comamonas testosteroni
           CNB-2]
 gi|262207555|gb|ACY31653.1| Exonuclease, RNase T and DNA polymerase III [Comamonas testosteroni
           CNB-2]
          Length = 174

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 51/179 (28%), Gaps = 49/179 (27%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF-- 69
            D E TGL+   DRIIEI  V      +              +       +H  +DE   
Sbjct: 4   LDCEMTGLNPDRDRIIEIAVVVSSSDLQI-------------RVEGPVFAIHQ-SDELLG 49

Query: 70  --------------LKDKPSFSSI-----FSEFWDFFN----EQNAEWIAHNAKFDVGFI 106
                         L DK   S+I      +    F      +       ++   D  F+
Sbjct: 50  GMDAWNKGTHGKSGLIDKVKASTISEAEAEAALIAFLGKYVPKGKTPLCGNSIGQDRRFM 109

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
              + ++N      +  + TL    ++                 +     +H AL D H
Sbjct: 110 ERYMPKLNNFFHYRNIDVSTLKELAKRWKPEAYT----------SFKKAQRHTALADVH 158


>gi|321467427|gb|EFX78417.1| hypothetical protein DAPPUDRAFT_105157 [Daphnia pulex]
 gi|321467428|gb|EFX78418.1| hypothetical protein DAPPUDRAFT_105158 [Daphnia pulex]
          Length = 244

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 63/182 (34%), Gaps = 26/182 (14%)

Query: 9   KIVFDIETTGLDSKND---RIIEIGAV----------ELLDYSKTNRTFQVFLCPNGRKN 55
            +  D+ETT   S  D   RI E+                +  +      + + P+   +
Sbjct: 37  YLFLDLETTSFISTEDPICRITELSMWGIEREQFLNCNGKNMPRITNRLNMCVDPSKEIH 96

Query: 56  SPEALKLHGITDEFLKDKPSFSS-IFSEFWDF--FNEQNAEWIAHN-AKFDVGFINAELQ 111
              A K   + +  L  +  F   + +    F    ++    IAH   KFD   + +E+ 
Sbjct: 97  PMAATKS-KLDNLNLSHQSPFDEDVVNTVLSFPNRLKKPMCMIAHYGFKFDFPILKSEIA 155

Query: 112 RINKDPLDPSRIIDTLSIAR---RKHPSSRND--LNSLCKR-YGITISHRSKHGALLDSH 165
            + KD  +     D+L + R   R  P       L S+ KR Y         H A  D  
Sbjct: 156 NVGKDFSEDVFCADSLPVFRTCQRLAPGVPYSYTLESVYKRIYN--NQPEVMHEAEADVK 213

Query: 166 LL 167
           +L
Sbjct: 214 ML 215


>gi|296135421|ref|YP_003642663.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia
           K12]
 gi|295795543|gb|ADG30333.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia
           K12]
          Length = 203

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 25/172 (14%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-----NSPEA 59
           +    I  D+E TGL+   DRIIE+  V   D   T R     L  +             
Sbjct: 15  HDDNLIWVDMEMTGLNPDTDRIIEVAVVVT-DPQLTVRVEGPVLAIHQSDAVLAGMDAWN 73

Query: 60  LKLH---GITD----EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
              H   G+TD      + +  +  +I +    +     +    +    D  F+   +  
Sbjct: 74  QNTHGKSGLTDRVRTSTVDEAQASKAIIAFLKKYVPAGKSPMCGNTICQDRRFMARGMPE 133

Query: 113 INKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +       +  + TL  +ARR  P        L   +      +  H AL D
Sbjct: 134 LETYFHYRNLDVSTLKELARRWRPE-------LVSAFK----KQQAHTALAD 174


>gi|121604376|ref|YP_981705.1| oligoribonuclease [Polaromonas naphthalenivorans CJ2]
 gi|120593345|gb|ABM36784.1| Exonuclease, RNase T and DNA polymerase III [Polaromonas
           naphthalenivorans CJ2]
          Length = 187

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 51/189 (26%), Gaps = 47/189 (24%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +++K+    +  D E TGLD + +RIIEI  V                     +     L
Sbjct: 7   LLKKSDQNLVWLDCEMTGLDPEKERIIEIAVVVTGPQLTP-------------RIEGPVL 53

Query: 61  KLH--------------------GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIA 96
            +H                    G+ D+      +     ++   F      +       
Sbjct: 54  AIHQSDELLDQMDKWNKGTHGRSGLIDKVKASTVTEEDAQAQLLAFLARYVPKGTTPMCG 113

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
           +    D  F+   + ++       +  + T     ++                       
Sbjct: 114 NTIGQDRRFLAKYMPKLELFFHYRNVDVSTFKELAKRWRPEVYS----------AFKKHQ 163

Query: 157 KHGALLDSH 165
           KH AL D H
Sbjct: 164 KHTALADVH 172


>gi|255719107|ref|XP_002555834.1| KLTH0G18590p [Lachancea thermotolerans]
 gi|238937218|emb|CAR25397.1| KLTH0G18590p [Lachancea thermotolerans]
          Length = 323

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 23/170 (13%)

Query: 8   RKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNS---PEALK 61
           R IV  D E TGLD  ND IIEI  +             ++  +  + +         + 
Sbjct: 74  RPIVWVDCEMTGLDHVNDHIIEICCIITDGDLNIIDEAGYESVIHCDKKIMDAMNEWCID 133

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRI 113
            H   G+T + L    +   +  E   +       E+      ++   D  F+  E  ++
Sbjct: 134 HHGSSGLTQKVLDSTKTTGQVEEELLAYLRKYIPAERKGVLAGNSVHMDRVFMMREFPKV 193

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                     + T+        S R++   L   +      +  H A  D
Sbjct: 194 IDHLFYRIIDVSTI-----MEVSFRHN-PDLASVF---PRKKGAHTARAD 234


>gi|310793445|gb|EFQ28906.1| exonuclease [Glomerella graminicola M1.001]
          Length = 699

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 57/169 (33%), Gaps = 27/169 (15%)

Query: 10  IVFDIET--TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  D E   TG +  +  +  I  +        +      + P  +  +    +  GIT+
Sbjct: 316 LALDCEMCMTGENEYS--LTRISVISWSGDLIMDE----LVKPE-KPITNYVTQFSGITE 368

Query: 68  EFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           E L  KP   +   I  +  D    +    I H+ + D+  +             P  + 
Sbjct: 369 EML--KPVTTTLKDIQQKLLDLITPR-TILIGHSLESDLKALRFS---------HPFIVD 416

Query: 125 DTLSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDV 170
            +L     + P  ++ L  L ++Y    I     + H  + D+    D+
Sbjct: 417 TSLIYPHPRGPPLKSSLKWLTQKYINREIQKGGANGHNPIEDARACLDL 465


>gi|294339527|emb|CAZ87886.1| oligoribonuclease [Thiomonas sp. 3As]
          Length = 203

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 51/172 (29%), Gaps = 25/172 (14%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-----NSPEA 59
           +    I  D+E TGL+   DRIIE+  V   D   T R     L  +             
Sbjct: 15  HDDNLIWVDMEMTGLNPDTDRIIEVAVVVT-DPQLTVRVEGPVLAIHQSDAVLAGMDAWN 73

Query: 60  LKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAELQR 112
              H   G+TD         +        F         +    +    D  F+   +  
Sbjct: 74  QNTHGKSGLTDRVRASTVDEAQASKAIIAFLKKYVPAGKSPMCGNTICQDRRFMARGMPE 133

Query: 113 INKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +       +  + TL  +ARR  P        L   +      +  H AL D
Sbjct: 134 LEAYFHYRNLDVSTLKELARRWRPE-------LVSAFK----KQQAHTALAD 174


>gi|260556115|ref|ZP_05828334.1| oligoribonuclease Orn [Acinetobacter baumannii ATCC 19606]
 gi|260410170|gb|EEX03469.1| oligoribonuclease Orn [Acinetobacter baumannii ATCC 19606]
          Length = 163

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 12/161 (7%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRK---NS 56
           M      R I  D+E TGLD+ ND+IIEI  +   D+        V  +    R      
Sbjct: 1   MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNVLAEGPVLAIHQPDRILNAMD 60

Query: 57  PEALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
               + HG       +    L  + +          + N + +    ++   D  F++  
Sbjct: 61  EWNTRQHGQSGLIERVRRSKLTARDAELQTLEFLKKWVNPKVSPMCGNSICQDRRFLHRL 120

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYG 149
           +  + +     +  + T+  +++R  P   + L   C  +G
Sbjct: 121 MPELEQYFHYRNLDVSTVKELSKRWRPEIMSGLKKKCITFG 161


>gi|216263573|ref|ZP_03435568.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
 gi|215980417|gb|EEC21238.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
          Length = 908

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 52/145 (35%), Gaps = 34/145 (23%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + I  D ET+ LD    R+I I             +F+ F    G     EA      
Sbjct: 339 KAKYISIDTETSSLDIYTARLIGISI-----------SFKEF---EGYYIPIEA------ 378

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                K K       I  +F + F E N + I  N KFD   +          P+ P   
Sbjct: 379 -----KGKIYIEKHYIIQKFNNLF-ESNPKIIGQNYKFDYKILKNN----GFSPIPP--Y 426

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
            DT+  A     +S+  L+ L ++Y
Sbjct: 427 FDTMIAAYLIDTNSKVSLDFLAEKY 451


>gi|255526643|ref|ZP_05393549.1| conserved hypothetical protein [Clostridium carboxidivorans P7]
 gi|296186102|ref|ZP_06854507.1| hypothetical protein CLCAR_1545 [Clostridium carboxidivorans P7]
 gi|255509676|gb|EET86010.1| conserved hypothetical protein [Clostridium carboxidivorans P7]
 gi|296049370|gb|EFG88799.1| hypothetical protein CLCAR_1545 [Clostridium carboxidivorans P7]
          Length = 265

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 55/158 (34%), Gaps = 34/158 (21%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS--KTNRTFQVFLCPNGRKNSPEALKL 62
           N  +   FDIETTG D + DR+I I      D       + F                  
Sbjct: 21  NMDKVAYFDIETTGFDKEEDRVILISMGRFKDDKFFCVKQYF------------------ 62

Query: 63  HGITDEFLKDKPSFSSIFSEF-WDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120
                E L+D      I   F  D    +  +W ++N   FD  FI   +++ N     P
Sbjct: 63  ----AEDLED---EKEILYNFQRDLLEYE--KWCSYNGIAFDEPFIKRRMEKQNIVFESP 113

Query: 121 SRIIDTLSIARRKHP---SSRNDLNSLCKRYGITISHR 155
              ID   + R  +      R +L ++ K  GI    +
Sbjct: 114 KYHIDLYRLIRPYYKQMGMERCNLKTVEKYIGIEREDK 151


>gi|324519519|gb|ADY47400.1| RNA exonuclease 4 [Ascaris suum]
          Length = 271

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 54/169 (31%), Gaps = 18/169 (10%)

Query: 8   RKIVFDIE--TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + I  D E    G+D   D +  +  V  +D       +  ++ P          ++ GI
Sbjct: 100 KAIGLDCEYVGAGMDGSEDVLARVSMV-NVDGECI---YDKYVKPKHHITDYR-TEVSGI 154

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
               L +  SF  I  E            + H  + D   +N    R        +R   
Sbjct: 155 RPHNLLNGESFERIQQEVHKLLA--GKIVVGHALQNDFRVLNLSHTR------KMTRDTS 206

Query: 126 TLSIARRKHPSSRN-DLNSLCKR-YGITISHRSKHGALLDSHLLSDVYI 172
                R+     +   L  L K   GI I     H ++ D+ +   +Y+
Sbjct: 207 KYIPFRQMVGVKKTPSLKLLAKHILGIDIQQGE-HDSISDARIAMRIYV 254


>gi|321261161|ref|XP_003195300.1| hypothetical protein CGB_G4380W [Cryptococcus gattii WM276]
 gi|317461773|gb|ADV23513.1| Hypothetical protein CGB_G4380W [Cryptococcus gattii WM276]
          Length = 179

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 18/150 (12%)

Query: 29  IGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFN 88
           IG V+           + F+  +         +  GI  + L   P++  I  +  +   
Sbjct: 13  IGIVDAYGNVL----MESFVRHHPANVVNYITRKSGIRPQDLVGAPTYEQIQPQIIELIK 68

Query: 89  EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK--HPSSRN----DLN 142
           ++    + H    D+  I    Q            +  L   R +   PS +      LN
Sbjct: 69  DK--IIVGHTLFNDLAVIGHRHQYEMMRDTALYYPLRNLVGVRSEGIWPSLKKLAAAVLN 126

Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDVYI 172
                 GI       H  + D+ +   +++
Sbjct: 127 EDMHAAGI------AHDPVEDARMTMAIFM 150


>gi|302335963|ref|YP_003801170.1| hypothetical protein Olsu_1181 [Olsenella uli DSM 7084]
 gi|301319803|gb|ADK68290.1| conserved hypothetical protein [Olsenella uli DSM 7084]
          Length = 323

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 48/145 (33%), Gaps = 30/145 (20%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL----------- 60
            D+ETT  D     II +G  E +D           L P  + +   A            
Sbjct: 136 IDLETTSRDPDRGYIINLGF-EFMD-----------LAPKAKPHDGHAAYFGLPDIYRER 183

Query: 61  -----KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA-EWIAHNAKFDVGFINAELQRI- 113
                 +H IT + L  K  F     E         A   +AHNA F+  ++   L+   
Sbjct: 184 GVPLANIHHITWDDLAGKTPFRQARREQEALLAAFRAFPIMAHNASFEDSWLTLHLEGYA 243

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSR 138
                    +ID+  I RR  P  +
Sbjct: 244 EARKAGQVVVIDSRDICRRIDPDYK 268


>gi|156063312|ref|XP_001597578.1| hypothetical protein SS1G_01772 [Sclerotinia sclerotiorum 1980]
 gi|154697108|gb|EDN96846.1| hypothetical protein SS1G_01772 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 626

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 85/266 (31%), Gaps = 53/266 (19%)

Query: 5   NKMRKIVFDIETT----GLDSKND--RIIEIGAVELLDYSKTNRTFQ---VFLCPNGRKN 55
           N  R +V  + TT    G+    D   +IE+G + L   +KT        V + P     
Sbjct: 11  NLDRYVVIHVATTCDEHGVYVTKDSAEVIELGWILL--DAKTCDELHRESVLVKPINTPI 68

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           +P    L  +T E ++   +F    + F  F  E      + N  F    +++   R+  
Sbjct: 69  TPLCTSLTTLTWEHVRTAGTFRDAINRFDTFAAEH---LTSQNLDFSFVTLDSWDLRVQL 125

Query: 116 ------------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGI------ 150
                         L  SR  D  +  +R         P   + L+++C    +      
Sbjct: 126 PREARDKAVVLPPYLQHSRTFDLRTEYQRWQQHHPESLPFGPSMLSNICAALEVEPVQAS 185

Query: 151 -TISHR-SKH----------GALLDSHLLSDVYIKMMVGGSQINFG--FKTNEDRFFKEE 196
             I H    H           A+ ++  L+ V   ++      +      T       + 
Sbjct: 186 APIKHNLPFHLQALAPASPRRAMEEAVTLARVLRGLIRKSQPPHEHPDVLTRPMDARADV 245

Query: 197 KKTVPNISLLKRDKPLFTRITKEELD 222
           +  +   S +     L    T+ EL+
Sbjct: 246 RAFLSERSKVLHMAGLPHDTTQSELE 271


>gi|146344208|ref|YP_001202064.1| oligoribonuclease [Pseudomonas fluorescens SBW25]
 gi|40789171|emb|CAE84149.1| oligoribonuclease [Pseudomonas fluorescens]
 gi|146188020|emb|CAM96350.1| plant-inducible oligoribonuclease [Pseudomonas fluorescens SBW25]
          Length = 195

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 30/180 (16%)

Query: 2   IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55
           + +++ R    D+ETTG            RI+EIGAV   ++     +  + +     + 
Sbjct: 6   MTRSQRRLPWLDLETTGFTELFDRRVYEHRILEIGAVVTDEHFTVLASTSIVIQQPMVRV 65

Query: 56  ----SPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDV 103
                    ++H   G+ DE +K   +  +   +   F+ +                FD 
Sbjct: 66  LELSDEAVTRMHTNNGLFDEVVKSFTTLKAAEHQLIQFYRQNGVSKKVEPLCGSGIHFDR 125

Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            FI A++  ++      +  I ++    +    S               S R +H AL D
Sbjct: 126 MFIEAQMPELHDFLYYRNLDISSVKEFLKTISPS------------FEPSKRQQHRALPD 173


>gi|229004425|ref|ZP_04162172.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
          Rock1-4]
 gi|228756825|gb|EEM06123.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
          Rock1-4]
          Length = 44

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 8  RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSK 39
          R +V D+ETTG   K+  DRI +I AV + D   
Sbjct: 4  RYVVVDLETTGNSWKDGKDRITQIAAVVVEDGEI 37


>gi|145344110|ref|XP_001416581.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576807|gb|ABO94874.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 183

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 18/176 (10%)

Query: 10  IVFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D E  G+ +   R I+   ++   D +         + P  R        + G+  +
Sbjct: 5   LALDCEMVGVGADGKRSILARASIVNEDGNVI---MDAHVLPTERVTDYR-TAVSGVRAK 60

Query: 69  FLK---DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRII 124
            L       +F  + ++  +    +    + H+ K D+  +  +  +R  +D      + 
Sbjct: 61  DLTAANGAVAFKKVQAQMSELL--RGRILVGHSLKNDMRVLMLDHPKRDTRDTSLYHPLT 118

Query: 125 DTLSIARRKHPSSRND-----LNSLCK-RYGITISHRSKHGALLDSHLLSDVYIKM 174
             L    R  P +        L  L +   G+ I  + +H ++ D+     +Y K 
Sbjct: 119 RPLRPEERCVPGAPRGRGCRALRDLARQHLGLEI-QKGEHSSVDDARATLALYKKF 173


>gi|126642350|ref|YP_001085334.1| putative DNA exonuclease X [Acinetobacter baumannii ATCC 17978]
          Length = 174

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 70/173 (40%), Gaps = 27/173 (15%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +H I +  L+++P     +  F     +     I HN  +D+  I     R   D + 
Sbjct: 1   MAVHHILESDLENQP----HYKTFK--LPDTTTYIIGHNIDYDIAAI----ARCGVD-VS 49

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISH-------RSKHGALLDSHLLSDVY 171
             + I TL++AR+  P +  +++++L   Y I+          +  H A  D  L +++ 
Sbjct: 50  HIKPICTLALARKTWPDAEAHNISALI--YMISQGSSKARELLKGAHRADADIILTANIL 107

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDE 223
           + ++      +   +  E+ +   E+  +P  I+  K        + K+ +  
Sbjct: 108 MHIVY-----HLNIQDIEELYRVSEEARIPTTINFGKHKGTAIAELPKDYIQW 155


>gi|76153258|gb|AAX24904.2| SJCHGC08852 protein [Schistosoma japonicum]
          Length = 212

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 13/116 (11%)

Query: 60  LKLHGITDEFLKD---KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            +  GI    L+      SF+ +  E  +    +N   + H+   D+  +     R    
Sbjct: 1   TRFSGIRPCDLRKNGPARSFTDVHKEVAELI--KNKILVGHSILKDLKVLRLSHPRRFIR 58

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVY 171
                R        R         L +L ++  G+ +    +H ++ D+     +Y
Sbjct: 59  DTSRYRPF------RDLFSGRIPSLKALTQKVLGVNV-QIGEHDSVEDARATMRLY 107


>gi|325921805|ref|ZP_08183622.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas gardneri
           ATCC 19865]
 gi|325547682|gb|EGD18719.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas gardneri
           ATCC 19865]
          Length = 212

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 58/174 (33%), Gaps = 31/174 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN---------------RTFQVFLCPNG 52
           R I  D+E TGLD+  D IIEI  +                             +   N 
Sbjct: 28  RLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLEKLEAMDEW-NRNQ 86

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
            + S    ++    D  +    + +   +   ++     +    ++   D  F++ ++ R
Sbjct: 87  HRRSGLWQRV---LDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMSR 143

Query: 113 INKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           + +     +  + T+  +ARR  P+  N             +  S H AL D  
Sbjct: 144 LERYFHYRNLDVSTIKELARRWAPTVANG-----------FAKSSAHTALSDVR 186


>gi|269968559|ref|ZP_06182563.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269826843|gb|EEZ81173.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 103

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 4  KNKMRKIVFDIETTGLDSKN----DRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE 58
           N  R + FD+E    +         IIE+G  E+ L   +  +  Q ++ P   + S  
Sbjct: 1  MNHNRIVCFDLEMCCWNENGVGSTGEIIEVGLAEIDLSKGEIVKRAQYYVKPEHDEVSLF 60

Query: 59 ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEW 94
            +L GIT   + K       +       F  +N  +
Sbjct: 61 CAELTGITPRKIEKQGRPLEEVLKSMVKNFGGRNKIF 97


>gi|320163436|gb|EFW40335.1| REXO2 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 180

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 29/171 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYS---------KTNRTFQVF--LCPNGRKNS 56
           R I  D+E TGLD   + IIE+  +                 ++  +V   +    +++ 
Sbjct: 7   RMIWVDLEMTGLDVSTETIIEMACIVTDSRGNILAEGPDIIIHQPDEVLDRMNDWCKEHH 66

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRI 113
             +    G+T        S +        F  E   +      +    D  F++  + + 
Sbjct: 67  GAS----GLTAAVRASTTSLAEAEEVMLAFVREHTSKGCVLAGNTIHMDKRFLDRYMPKF 122

Query: 114 NKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +         + TL  + RR +P            +      +  H AL D
Sbjct: 123 SAHLHYRLIDVSTLKELCRRWYP----------AIFANAPPKQGLHRALDD 163


>gi|309356883|emb|CAS00631.1| hypothetical protein CBG_27169 [Caenorhabditis briggsae AF16]
 gi|309356887|emb|CAP36416.2| hypothetical protein CBG_19115 [Caenorhabditis briggsae AF16]
          Length = 596

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 64/176 (36%), Gaps = 22/176 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E     + N  +  I  V+    +  +      + P+G   +    +  GIT++ ++
Sbjct: 227 VDCEMCETTTANRALTRISIVDEEQNTILD----TLVKPDG-DITDYVTRYSGITEKMME 281

Query: 72  DKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              +  + +     +     +A  + H+ +FD+  +           +D    ++  + A
Sbjct: 282 GVTTTLADVQKAVQNLL-PPDAILVGHSLEFDLRAMRMTHPFC----IDVGHTLNYTNSA 336

Query: 131 RRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                  RN L +L + + G+ I  +  H +  D+      +  M +   +I  G 
Sbjct: 337 N----GGRNSLKNLSEFFLGVQIQTKFGHCSYEDA------WAAMRLAQLKIEKGL 382


>gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1]
          Length = 927

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 26/146 (17%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R      +  D ETT LD    R++ I                  + P      P A + 
Sbjct: 346 RLRSAPLVALDTETTSLDEMAARLVGI---------------SFSVAPGEAAYLPLAHE- 389

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
               D     +     + +    +  +  A     + K+D   +       N   L    
Sbjct: 390 ----DPGTAGQLPLDEVLARLRPWLEDPAAAKCGQHIKYDQHVL------ANHGILVQGY 439

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
           + DT+  +        ++L SL +R+
Sbjct: 440 VHDTMLQSYVLEVHRPHNLESLAERH 465


>gi|268558834|ref|XP_002637408.1| Hypothetical protein CBG19115 [Caenorhabditis briggsae]
          Length = 413

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 64/176 (36%), Gaps = 22/176 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E     + N  +  I  V+    +  +      + P+G   +    +  GIT++ ++
Sbjct: 178 VDCEMCETTTANRALTRISIVDEEQNTILD----TLVKPDG-DITDYVTRYSGITEKMME 232

Query: 72  DKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              +  + +     +     +A  + H+ +FD+  +           +D    ++  + A
Sbjct: 233 GVTTTLADVQKAVQNLL-PPDAILVGHSLEFDLRAMRMTHPFC----IDVGHTLNYTNSA 287

Query: 131 RRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                  RN L +L + + G+ I  +  H +  D+      +  M +   +I  G 
Sbjct: 288 N----GGRNSLKNLSEFFLGVQIQTKFGHCSYEDA------WAAMRLAQLKIEKGL 333


>gi|229829145|ref|ZP_04455214.1| hypothetical protein GCWU000342_01230 [Shuttleworthia satelles DSM
           14600]
 gi|229792308|gb|EEP28422.1| hypothetical protein GCWU000342_01230 [Shuttleworthia satelles DSM
           14600]
          Length = 360

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 25/123 (20%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIETTG  +K   I  IG     D        Q+ L     +   +             
Sbjct: 29  LDIETTGFSAKFCSIYLIGCAVRRDR-------QLLLTQFFAETPAQ------------- 68

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSIA 130
                 +I + F D+ +++N+    +   FD+ F+ +  +R   + PL     ID    A
Sbjct: 69  ----EPAILAAFADYLSDKNSIVTFNGQAFDLPFLESRARRSGVNLPLRQLISIDLYRTA 124

Query: 131 RRK 133
           R+ 
Sbjct: 125 RKY 127


>gi|302562577|ref|ZP_07314919.1| exonuclease superfamily protein [Streptomyces griseoflavus Tu4000]
 gi|302480195|gb|EFL43288.1| exonuclease superfamily protein [Streptomyces griseoflavus Tu4000]
          Length = 194

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 60/178 (33%), Gaps = 15/178 (8%)

Query: 11  VFDIETT---GLDSKND--RIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           V D+E T   G     +   IIEIG AV  LD  +     ++ + P     S    +L G
Sbjct: 12  VVDVEATCWAGSQPPGEVSEIIEIGLAVLDLDAGERLARHRILVRPVRSTVSKFCSELTG 71

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL----DP 120
           +T   +    +F+    +           W++        F           P       
Sbjct: 72  LTQHEVDQGLAFAEACQQLAAEHCAGARPWVSWGDYDRFQFTRQCHATRTPYPFGRRHTN 131

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           ++ + T + + RK P          +  G+ +  R  H    D+  ++ + + +   G
Sbjct: 132 AKAVFTEAHSLRKRPGM----AQALEIAGLRLEGR-HHRGEDDAWNIAALVLHLAERG 184


>gi|313229778|emb|CBY07483.1| unnamed protein product [Oikopleura dioica]
 gi|313241776|emb|CBY33992.1| unnamed protein product [Oikopleura dioica]
          Length = 174

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           +HGI +E L  K S   + S   +         + HN K D+  +              +
Sbjct: 13  IHGIAEEDLIGKQSDRLLISRVKEL--TAGKILVGHNIKSDLEVLE--------IIPTQA 62

Query: 122 RIIDTLSIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           R+ DT              L  L  ++ GI I     H +  D+      ++ +++   +
Sbjct: 63  RVRDTAEQFAWTLGKQWPSLKDLASQKLGIEI-QTGAHDSKEDA------FVSLLIFAKE 115

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224
            +       D F ++ K+     S            + E L  H
Sbjct: 116 FSSWKNDLNDDFLQKRKEENMRSSPFYCRICNIVCASSENLKAH 159


>gi|322711776|gb|EFZ03349.1| hypothetical protein MAA_00423 [Metarhizium anisopliae ARSEF 23]
          Length = 425

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 48/188 (25%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + M  I +++E   L+ K+  I +IGA    +     +TF  F+  + R N         
Sbjct: 185 SNMTLIFYNLE---LN-KDGEIEQIGACTENN-----KTFSSFIKTSVRAN--------- 226

Query: 65  ITDEFLKDKP-SF--------SSIFSEFWDFFN------------EQNAEWIAHN-AKFD 102
            T   L+  P +F        +    +F  + +            + N    AHN +  D
Sbjct: 227 -TSPMLRAIPQTFWTIFAAHPARAIKDFIAWIDLNHQTNTGGDKNQNNIMLAAHNGSSHD 285

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHG 159
              +   + +   DP D  R+ DTL + +      RN    L +L  RY   I H   H 
Sbjct: 286 HIRLIRMMMKHGVDPPD-YRLTDTLVLFKVI--KGRNLGASLAALRDRYAPWIPH-IAHD 341

Query: 160 ALLDSHLL 167
           A  D+ +L
Sbjct: 342 ADSDASVL 349


>gi|302521659|ref|ZP_07274001.1| oligoribonuclease [Streptomyces sp. SPB78]
 gi|318057630|ref|ZP_07976353.1| oligoribonuclease [Streptomyces sp. SA3_actG]
 gi|318077542|ref|ZP_07984874.1| oligoribonuclease [Streptomyces sp. SA3_actF]
 gi|333024701|ref|ZP_08452765.1| putative oligoribonuclease [Streptomyces sp. Tu6071]
 gi|302430554|gb|EFL02370.1| oligoribonuclease [Streptomyces sp. SPB78]
 gi|332744553|gb|EGJ74994.1| putative oligoribonuclease [Streptomyces sp. Tu6071]
          Length = 198

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 28/171 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEALK-LH 63
           R +  D E TGL   ND +IE+ A V   + +       + + P  +  +  PE ++ +H
Sbjct: 4   RMVWIDCEMTGLSLANDALIEVAALVTDSELNILGDGVDIVIRPPEQALATMPEVVRDMH 63

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINK 115
              G+  E L    + +        +  E     + A    +    D  F+  ++  +  
Sbjct: 64  TSSGLLAE-LDGGTTLADAEERVLSYVREHVKEPRKAPLCGNTVGTDRNFLARDMADLEG 122

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 RI+D  SI   +RR  P            +      +  H AL D
Sbjct: 123 --FLHYRIVDVSSIKELSRRWFPR---------AYFNAP-EKKGNHRALAD 161


>gi|308801419|ref|XP_003078023.1| Xpmc2 protein (ISS) [Ostreococcus tauri]
 gi|116056474|emb|CAL52763.1| Xpmc2 protein (ISS) [Ostreococcus tauri]
          Length = 290

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 18/178 (10%)

Query: 8   RKIVFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +  D E  G+     R ++   +V   D +       VF+ P  R        + G+ 
Sbjct: 91  RTLALDCEMVGVGEDGRRSVLARVSVVNEDGNVI---LDVFVQPTERVTDYR-TAVSGVR 146

Query: 67  DEFLK---DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSR 122
              +K      +F  + ++  +    +    + H+ K D+  +  +  +R  +D      
Sbjct: 147 PNDVKAESGARTFRVVQAQMSELL--RGKVLVGHSLKNDMKALMLDHPKRDTRDTSLYHP 204

Query: 123 IIDTLSIARRKHPSSRND-----LNSLCK-RYGITISHRSKHGALLDSHLLSDVYIKM 174
           +   L    R  P +        L  L +   G+ I     H ++ D+     +Y K 
Sbjct: 205 LTRPLRPEERCVPGAPRGRGCRALRDLARQHLGLEIQTGE-HSSVDDARAALALYKKF 261


>gi|256821737|ref|YP_003145700.1| Exonuclease RNase T and DNA polymerase III [Kangiella koreensis DSM
           16069]
 gi|256795276|gb|ACV25932.1| Exonuclease RNase T and DNA polymerase III [Kangiella koreensis DSM
           16069]
          Length = 182

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 37/181 (20%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + KN    I  D+E TGLD + D +IEI  +                         ++ +
Sbjct: 1   MTKNDDNLIWVDLEMTGLDPETDVVIEIATIVTDKDLNILEE-------GPVIAIHQSDE 53

Query: 62  L-----------H---GITDEFLKDKPSFSSIFS---EFW-DFFNEQNAEWIAHNAKFDV 103
           +           H   G+T+   +   +         EF   + +E  +    ++   D 
Sbjct: 54  VLDNMNEWCVVQHGKSGLTERVRQSSINEDQASDLTLEFLKKWIDEGKSPMCGNSICQDR 113

Query: 104 GFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
            F+   + ++          + TL  +ARR  PS  N L           +  + H AL 
Sbjct: 114 RFMVKHMPKLEAYFHYRHIDVSTLKELARRWKPSILNGL-----------TKGATHLALD 162

Query: 163 D 163
           D
Sbjct: 163 D 163


>gi|218708317|ref|YP_002415938.1| oligoribonuclease [Vibrio splendidus LGP32]
 gi|218321336|emb|CAV17286.1| Oligoribonuclease [Vibrio splendidus LGP32]
          Length = 181

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 33/179 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEA- 59
           +  +    I  D+E TGLD +  +IIEI  +       T+    +    P    + P++ 
Sbjct: 1   MSFSDQNLIWVDLEMTGLDPETHKIIEIATI------VTDSELNILAEGPVLAIHQPQSE 54

Query: 60  ---------LKLHG------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
                        G      I D  + ++ +          +  +  +    ++   D  
Sbjct: 55  LDKMDEWCTTTHTGSGLVKRIQDSTVSEQDAIQQTIEFLEKWVPKGKSPICGNSIGQDRR 114

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   +  + +        + TL    R+       L+          S    H AL D
Sbjct: 115 FLYKHMPELEEYFHYRYVDVSTLKELTRRWKPE--VLD--------GFSKSGSHLALDD 163


>gi|195651097|gb|ACG45016.1| oligoribonuclease [Zea mays]
          Length = 249

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 22/170 (12%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLD---------YSKTNRTFQVFLC-PNGRKN 55
           +M  +  D+E TGLD   DRI+EI  +                 +++           K 
Sbjct: 67  RMPLVWIDLEMTGLDITKDRILEIACIITDGKLTKQIEGPDLVISQSKDCLDNMDEWCKT 126

Query: 56  SPEALKLH-GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              A  L   +    L +  + + +        N        ++   D  F+   + ++ 
Sbjct: 127 HHAASGLTERVLQSELSEHDAEAKVLDFVRKHINSVTPLLAGNSVYVDFLFLKKYMPQLA 186

Query: 115 KDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                    + + +++  R +P  R            T   +  H A+ D
Sbjct: 187 AVFSHVIVDVSSIMALCIRWYPKER----------KQTPRKQKTHRAMDD 226


>gi|313836680|gb|EFS74394.1| exonuclease [Propionibacterium acnes HL037PA2]
 gi|314929914|gb|EFS93745.1| exonuclease [Propionibacterium acnes HL044PA1]
 gi|314972342|gb|EFT16439.1| exonuclease [Propionibacterium acnes HL037PA3]
          Length = 202

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 58/165 (35%), Gaps = 24/165 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGR---KNSPEALKLH---G 64
            D E TGLD  +D +IE+ A+              V + P  +     +     +H   G
Sbjct: 5   IDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLEHMNDFVRDMHTKSG 64

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +E L    +      +  D+ +        A    +    D  F+  ++  +      
Sbjct: 65  LLEE-LDKGLTMMQAQEQVLDYIHTYVPQAGKAPLAGNTIGTDRSFLAKDMPELESYVHY 123

Query: 120 PSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  + ++  +ARR +P          + +G +   +  H AL D
Sbjct: 124 RNVDVSSIKELARRWYP----------RAFGRSPEKQGNHRALAD 158


>gi|323508214|emb|CBQ68085.1| conserved hypothetical protein [Sporisorium reilianum]
          Length = 418

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 22/107 (20%)

Query: 9   KIVFDIETT------------GLDSKN----DRIIEIGAVELLDYSKTNR-----TFQVF 47
            +V D+E T            G ++ +    + IIE   V L     T++      +  +
Sbjct: 64  FLVLDVEATCEATRKYRNLQHGFETGSFQYPNEIIEFPVVLLRWNEATHQLDTAGVYHSY 123

Query: 48  LCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE 93
           + P  R   +     L G+T   +   P++S +  EF+ F    +  
Sbjct: 124 VRPTFRPQLTKFCRDLTGVTQAQVDAAPTWSDVVEEFFRFLRSHDLV 170


>gi|317124466|ref|YP_004098578.1| exonuclease RNase T and DNA polymerase III [Intrasporangium calvum
           DSM 43043]
 gi|315588554|gb|ADU47851.1| Exonuclease RNase T and DNA polymerase III [Intrasporangium calvum
           DSM 43043]
          Length = 211

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 61/171 (35%), Gaps = 28/171 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGR---KNSPEALKLH 63
           R I  D E TGL  + D ++E+ A V   + +       V + P      +       +H
Sbjct: 16  RIIWIDCEMTGLSLRTDALVEVAALVTDFELTVLGEGVDVVIRPPAAALDQMDEFVRDMH 75

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINK 115
              G+ DE L    +     S   D+        + A    ++   D GF+  ++  +  
Sbjct: 76  TTSGLLDE-LDGGVTLEEAQSLVLDYVRSFVPEPRKAPLGGNSVATDRGFLARDMPDL-- 132

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +     RIID  SI   +RR +P          + Y         H AL D
Sbjct: 133 ETHLHYRIIDVSSIKELSRRWYP----------RVYFNAPKKSGGHRALAD 173


>gi|255715964|ref|XP_002554263.1| KLTH0F01232p [Lachancea thermotolerans]
 gi|238935646|emb|CAR23826.1| KLTH0F01232p [Lachancea thermotolerans]
          Length = 464

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 23/161 (14%)

Query: 93  EWIAHNAKFDVGFINAEL----QRINKDPLDPSR------IIDTLSIARRKHPSSRNDLN 142
            ++ HN K D+ ++ +        I  D L          I+DT  + R  + S  + L 
Sbjct: 293 AFVGHNVKGDLKWLFSIGVNLPANIGHDTLSLDPKLERISILDTEKLYRVMYGSKGSSLG 352

Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDVYIKMM------VGGSQINFGFKTNEDRFFKEE 196
            + + + I   H   H A  D++    + + M              +      + + + E
Sbjct: 353 KILRLFKIP--HAYLHNAGNDAYFTLKLLLHMCDVNYRRRLQMDDFYAVTATVEEWSRRE 410

Query: 197 KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237
           K      S  K +       ++ +   H +          W
Sbjct: 411 KNKGSVNSHGKGNHEFTEYRSRRKQSLHTEF-----GGCRW 446


>gi|325266418|ref|ZP_08133095.1| oligoribonuclease [Kingella denitrificans ATCC 33394]
 gi|324981861|gb|EGC17496.1| oligoribonuclease [Kingella denitrificans ATCC 33394]
          Length = 182

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 52/164 (31%), Gaps = 23/164 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----SPEALKLH---G 64
            D+E TGL+  +D+IIEI  +             V+      +            H   G
Sbjct: 10  LDMEMTGLNPDSDKIIEIAMIITDKDLNVLAQSPVYAIHQSDEILNGMDAWCTATHARTG 69

Query: 65  ITDEFLK-----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +T E ++     +     ++ +   ++   +      +    D  F+   + R+      
Sbjct: 70  LT-ERVRASTHTEAEVEEALLAWMQEWIPAKTTPMCGNTIHQDRRFMVRYMPRLEAYFHY 128

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  + TL    R+   +              +  +  H AL D
Sbjct: 129 RNLDVSTLKELARRWNPAVYK----------GVVKKGSHQALDD 162


>gi|290558977|gb|EFD92360.1| conserved hypothetical protein, helicase, UvrD/REP/exonuclease
           family protein [Candidatus Parvarchaeum acidophilus
           ARMAN-5]
          Length = 166

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 15/129 (11%)

Query: 63  HGITDEFLKD--KPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +G +++ +KD  K    SI  +F  +    ++     HN  FD  F+N   +R   D   
Sbjct: 21  NGFSEKQIKDPNKKDLESILKDFIIWIEPIKDRTIAGHNVTFDARFLNTAFKRYGIDFTF 80

Query: 120 PSRIIDTLS------IARRKHPSSRNDLNSLCKRY-----GITISHRSKHGALLDSHLLS 168
             R++DT S      I++ K    +N    +   Y     G+       H AL  + + +
Sbjct: 81  GYRVVDTHSLTYASLISKSKEVPLKNGRTDITSDYVFNYVGLP-EETKPHNALNGAKMEA 139

Query: 169 DVYIKMMVG 177
           +   +++ G
Sbjct: 140 EAISRLVYG 148


>gi|269962181|ref|ZP_06176534.1| exodeoxyribonuclease I [Vibrio harveyi 1DA3]
 gi|269833012|gb|EEZ87118.1| exodeoxyribonuclease I [Vibrio harveyi 1DA3]
          Length = 427

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 49/153 (32%), Gaps = 23/153 (15%)

Query: 50  PNGRKNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFIN 107
           P     SPEA  + GIT +  +++        ++     ++ N   + +N+ +FD     
Sbjct: 6   PADYLPSPEAALITGITPQKAMQEGLPEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTR 65

Query: 108 AELQRINKDPLDPSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRY 148
               R   DP   S          +D +       P                L  L    
Sbjct: 66  YTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVAN 125

Query: 149 GITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           GI   H + H A+ D     ++  K+     ++
Sbjct: 126 GIE--HSNAHDAMADVIATIEMAKKVKAAQPKL 156


>gi|302891517|ref|XP_003044640.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256725565|gb|EEU38927.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 320

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 54/166 (32%), Gaps = 11/166 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D E  G+         +  V ++D+    + +  ++ P  +  +     + GI+ 
Sbjct: 133 KYIAIDCEMVGVGPGGYE-SALARVSIVDFHG-RQVYDSYVKPKEKVTNWR-TAVSGISP 189

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + ++    F  + ++      ++    I H+ K D+  +       +             
Sbjct: 190 KSMRFARDFEEVQADIDKLLKDR--ILIGHDLKHDLEALILSHPARDIRDTAKFPGFKKY 247

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              R+             +  G+ I     H ++ D+     ++ K
Sbjct: 248 GNGRKPALRLLAQ-----QLLGVEI-QEGAHSSIEDARATMLLFRK 287


>gi|147920626|ref|YP_685575.1| hypothetical protein RCIX900 [uncultured methanogenic archaeon
           RC-I]
 gi|110620971|emb|CAJ36249.1| hypothetical protein RCIX900 [uncultured methanogenic archaeon
           RC-I]
          Length = 162

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 10/140 (7%)

Query: 37  YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI- 95
             +        +       + +   +HGIT E +   P+   +  +F    +  +  +  
Sbjct: 16  RIECRDCMDSLIRIPDPSMAEDTFFVHGITPEQVAAAPAPEEVCRKFLTLHSNHSFTFAG 75

Query: 96  AHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISH 154
           A N KFD  F++   ++                      P     L+          I  
Sbjct: 76  AWNHKFDRYFVDKLFKQTGVRQPG--------LSWIEMQPKPYAKLDHYADSIQCEKIRA 127

Query: 155 RSKHGALLDSHLLSDVYIKM 174
              H AL D      VY  M
Sbjct: 128 LPGHNALNDCFRALGVYATM 147


>gi|296410712|ref|XP_002835079.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295627854|emb|CAZ79200.1| unnamed protein product [Tuber melanosporum]
          Length = 596

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 68/213 (31%), Gaps = 49/213 (23%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R +V  + TT    G+    D   +IEIG +        + +R   V + P     +P  
Sbjct: 3   RYVVIHVATTCDEHGVYVTKDSAEVIEIGWILLNAKSLEEIHRE-SVLVRPVNTPITPLC 61

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
             L  +T E ++   SF    + F  F  E     ++    F    ++A   R+      
Sbjct: 62  TSLTTLTWEHVRTAGSFRDAVNRFDTFAQE---YLMSQQLDFTFVTLDAWDLRVQLPREA 118

Query: 116 --------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGI-------TIS 153
                     L  SR  D  +   R         P   + L ++C    +        I 
Sbjct: 119 RDKAVVLPPYLQHSRTFDLRTEYTRWQSHHPESLPFGPSSLANICAALEVEPVQSSAPIK 178

Query: 154 HR-SKH----------GALLDSHLLSDVYIKMM 175
           H    H           A+ ++  L+ V   ++
Sbjct: 179 HNLPFHLQALAPASPRRAMEEAITLARVLRGLI 211


>gi|315226274|ref|ZP_07868062.1| oligoribonuclease [Parascardovia denticolens DSM 10105]
 gi|315120406|gb|EFT83538.1| oligoribonuclease [Parascardovia denticolens DSM 10105]
          Length = 254

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 57/166 (34%), Gaps = 24/166 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP---EALKLH---G 64
            D E TGLD ++D + E+  V    +    ++   + + P+    +       ++H   G
Sbjct: 38  IDCEMTGLDIEHDELCEVSVVPTDFNLKVLDQGIDLVIKPSQAAVNHMGDFVRRMHASSG 97

Query: 65  ITDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINKDPL 118
           +  E+   L    + + +      F  E     A    +    D  F++  +  +     
Sbjct: 98  LIKEWEQGLSLAEAEARVIDYVKPFLPEDGQGKAHLAGNTIGSDKKFLDRFMPDLMGLLH 157

Query: 119 DPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  + TL  ++RR +P            Y         H AL D
Sbjct: 158 YRTIDVSTLKELSRRWYP----------DVYSQRPVKHGGHRALAD 193


>gi|256811514|ref|YP_003128883.1| hypothetical protein Mefer_1580 [Methanocaldococcus fervens AG86]
 gi|256794714|gb|ACV25383.1| hypothetical protein Mefer_1580 [Methanocaldococcus fervens AG86]
          Length = 176

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 45/161 (27%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNSPEALKLH 63
           M K + DIETTGL+    RI+ IG V + D +        + + +               
Sbjct: 1   MVKAIIDIETTGLNPMEHRIVAIG-VRIGDRTIILMDESEYYLLVN-------------- 45

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGF--INAELQRINKDPLDP 120
                              FWD   ++  E  I  N  FD  F  + +   R+       
Sbjct: 46  -------------------FWDTVEKEGIEKIIGFNIDFDWQFLKLRSLYHRLKIKHFRK 86

Query: 121 SR-IIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSK 157
            +  +D    L+ +  ++      L   C+  GI +     
Sbjct: 87  YQGRVDLRQILNGSGGQYKKG-TKLVDYCRFLGIDVPEDDA 126


>gi|307690045|ref|ZP_07632491.1| BRCT domain-containing protein [Clostridium cellulovorans 743B]
          Length = 200

 Score = 48.7 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 11/123 (8%)

Query: 86  FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLC 145
           F  +     +AHN  FD  F+    Q I  D L    +   + +A +   S    L +L 
Sbjct: 1   FLKKYPYPIVAHNCPFDRKFLV-YYQWITDDYLAYCSM-RAIRMANKMLDS--YALQNLV 56

Query: 146 KRYGITISHRSKHGALLDSHLLSDVY--IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNI 203
           K Y   ++   KH A+ D     +VY  +K++     +  G  +    + K + + + +I
Sbjct: 57  KHY--EVADEVKHTAMSDIE---NVYKILKIVKPQIWLPVGTSSKSRSYSKVKARALEDI 111

Query: 204 SLL 206
            L 
Sbjct: 112 DLR 114


>gi|222622505|gb|EEE56637.1| hypothetical protein OsJ_06040 [Oryza sativa Japonica Group]
          Length = 630

 Score = 48.7 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 26/163 (15%)

Query: 43  TFQVFLC---PNGRKNSPEALKLHGITDEFLKD-KPSFSSIFSEFWDFF--NEQNAEWIA 96
            F   +     +G+     + + H +T    +   P F  ++          + +  W+A
Sbjct: 197 NFDFNVNSPKYHGKSIDFLSSQGHDLTQHSKRGVAPEF--VYEGLLRHLPFGDGSVTWVA 254

Query: 97  HNAKFDVGFINAELQR--INKDPLDPSRIIDTLSIARRKHP--------------SSRND 140
            +  +D+ F+   LQ      + L P ++   L   R K P                   
Sbjct: 255 FHGDYDLAFLLRLLQGGDHGGNCLLPPKLATFLQKVREKFPVVYDVRVLGKLVKDGFNGS 314

Query: 141 LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQIN 182
           L +L +  GI  +    H A  D+ L    + K++ + G Q++
Sbjct: 315 LTALAEYLGIPRNGDEHH-AGSDALLTLSCFFKIVSLSGHQMH 356


>gi|326426891|gb|EGD72461.1| hypothetical protein PTSG_11592 [Salpingoeca sp. ATCC 50818]
          Length = 978

 Score = 48.7 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 44/149 (29%), Gaps = 13/149 (8%)

Query: 9   KIVFDIETTGLDSKN---DRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
             V D E T  +        IIE   V + +   +     Q +  P      SP   +L 
Sbjct: 35  ICVVDFEATCEEDDANFPHEIIEFPLVIIDVHRKEIVEKQQFYCRPVFNPILSPFCTQLT 94

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAE------WIAHNAKFDVGFINAELQRINKDP 117
           GI  E +     F  +  +     ++  +        +A +  +D         R +  P
Sbjct: 95  GIKQESVDSAAEFPHVLDQVMAILDKYRSHDAGHKLLLASDGPWDFRNFFQWQCRASSVP 154

Query: 118 LD--PSRIIDTLSIARRKHPSSRNDLNSL 144
                 + +D     R      +   + L
Sbjct: 155 APALMHQWLDIRKAFRACRGGVKRRGDQL 183


>gi|327394409|dbj|BAK11831.1| exodeoxyribonuclease I SbcB [Pantoea ananatis AJ13355]
          Length = 412

 Score = 48.7 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 37/127 (29%), Gaps = 23/127 (18%)

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD 119
           + GIT +       S +   +     F  +    + +N  +FD         R   DP  
Sbjct: 2   ITGITPQIAASRGVSEAEFAARIHALFTAEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYG 61

Query: 120 PSRI--------IDTLSIARRKHPSS-----------RNDLNSLCKRYGITISHRSKHGA 160
            S          +D +       P                L  L K  G+  +H + H A
Sbjct: 62  WSWQNGNSRWDLLDVMRACYALRPEGINWPENEDGFPSFRLEHLTKANGV--AHENAHDA 119

Query: 161 LLDSHLL 167
           + D +  
Sbjct: 120 MSDVYAT 126


>gi|54023254|ref|YP_117496.1| oligoribonuclease [Nocardia farcinica IFM 10152]
 gi|59797997|sp|Q5Z0A9|ORN_NOCFA RecName: Full=Oligoribonuclease
 gi|54014762|dbj|BAD56132.1| putative oligoribonuclease [Nocardia farcinica IFM 10152]
          Length = 216

 Score = 48.7 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 28/172 (16%)

Query: 8   RKIV-FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG---RKNSPEALKL 62
           + +V  D E TGL   +D++IE+ A V   D +       + +  +        P   ++
Sbjct: 4   KLVVWMDCEMTGLRLDSDKLIEVSALVTDSDLNILGDGVDIVIHADDAALAAMPPVVAEM 63

Query: 63  H---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRIN 114
           H   G+TDE  +   + +    +  D+  +     +      ++   D  FI  ++  + 
Sbjct: 64  HARSGLTDEVRRSTVTVAEAEQQVLDYIRQYVPTPRTVPLAGNSIATDRAFIARDMPAL- 122

Query: 115 KDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            D     R+ID  SI    RR +P            +G        H AL D
Sbjct: 123 -DAHLHYRMIDVSSIKELCRRWYPR---------IYFGQP-EKGLTHRALAD 163


>gi|312140423|ref|YP_004007759.1| exonuclease [Rhodococcus equi 103S]
 gi|311889762|emb|CBH49079.1| exonuclease [Rhodococcus equi 103S]
          Length = 199

 Score = 48.7 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 60/173 (34%), Gaps = 27/173 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG---RKNSPEALK 61
           + + +  D E TGL   +D++IEI A V   D +       + +  +            +
Sbjct: 2   QDKLVWIDCEMTGLRLGSDKLIEIAALVTDSDLNILGEGVDIVIHADDEALADMPDVVTQ 61

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRI 113
           +H   G+T+E      + +        +  E            ++   D GFI  ++  +
Sbjct: 62  MHAKSGLTEEVRASTVTLAEAEQMVLAYIREHVPVAGTVPLAGNSIATDRGFIARDMPEL 121

Query: 114 NKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             D     R+ID  SI    RR +P            +G        H AL D
Sbjct: 122 --DSHLHYRMIDVSSIKELCRRWYPR---------IYFGQP-EKGLSHRALAD 162


>gi|254259166|ref|ZP_04950220.1| 34L [Burkholderia pseudomallei 1710a]
 gi|254217855|gb|EET07239.1| 34L [Burkholderia pseudomallei 1710a]
          Length = 223

 Score = 48.7 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++K     I  + W   ++ +   +A N  KFD   I A    +   P  P +++DTL  
Sbjct: 22  RNKEDDRRIVRKLWRLLDQAD-IVVAQNGIKFDAKKIQARFLLLGMPPPSPFKVVDTLVE 80

Query: 130 ARRKHPSSRNDLNSLCKRY 148
           AR+    + N L  L ++ 
Sbjct: 81  ARKHFGFTSNKLEWLTEKL 99


>gi|76810908|ref|YP_333055.1| hypothetical protein BURPS1710b_1651 [Burkholderia pseudomallei
           1710b]
 gi|76580361|gb|ABA49836.1| 34L [Burkholderia pseudomallei 1710b]
          Length = 262

 Score = 48.7 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++K     I  + W   ++ +   +A N  KFD   I A    +   P  P +++DTL  
Sbjct: 61  RNKEDDRRIVRKLWRLLDQAD-IVVAQNGIKFDAKKIQARFLLLGMPPPSPFKVVDTLVE 119

Query: 130 ARRKHPSSRNDLNSLCKRY 148
           AR+    + N L  L ++ 
Sbjct: 120 ARKHFGFTSNKLEWLTEKL 138


>gi|150864428|ref|XP_001383238.2| Asparagine-rich protein (ARP protein) [Scheffersomyces stipitis CBS
           6054]
 gi|149385684|gb|ABN65209.2| Asparagine-rich protein (ARP protein) [Scheffersomyces stipitis CBS
           6054]
          Length = 460

 Score = 48.7 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 91/251 (36%), Gaps = 50/251 (19%)

Query: 16  TTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDK 73
           TT +   +  +IE     V+       ++   V + P     +P   +LH IT E +++ 
Sbjct: 18  TTYVTKDSSELIEFAWSVVDATTLENLDKE-SVLVRPVNTPITPYCSQLHRITWEHVRNA 76

Query: 74  PSFSSIFSEFWDFFNEQNAEWIAHNAK-----FDVGFINAELQRINKD-------PLDPS 121
            SF     +F  +  +     I+ N +     FD+  +  +L R  +D        L   
Sbjct: 77  GSFKDAIVKFDTYIQDN---IISKNKEFSLVTFDMSKLRVQLPREARDKAVVLPPYLQHP 133

Query: 122 RIIDT---LSIARRKHPSS----RNDLNSLCKRYGITISHRSKHGAL------------- 161
           R+ D     +  +  HP +     + L+++     + I   ++  AL             
Sbjct: 134 RVFDLSTEYAKWQITHPEALSYTASSLSNVITALEVEIDSDTE-DALKNPLSTSPPAAPV 192

Query: 162 -LDSH--LLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP------- 211
             D+      +++ K++V   + +   + +      +   +  ++S+   ++        
Sbjct: 193 SSDTKTMATVNLFTKILVQLIRKSIPIE-DHASVLTKPYDSAKDVSVFLSERSKILYLYN 251

Query: 212 LFTRITKEELD 222
           L    T+ EL+
Sbjct: 252 LPNDTTQSELE 262


>gi|154488091|ref|ZP_02029208.1| hypothetical protein BIFADO_01662 [Bifidobacterium adolescentis
           L2-32]
 gi|154083564|gb|EDN82609.1| hypothetical protein BIFADO_01662 [Bifidobacterium adolescentis
           L2-32]
          Length = 212

 Score = 48.7 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 68/162 (41%), Gaps = 20/162 (12%)

Query: 12  FDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNG---RKNSPEALKLH---G 64
            D ETTG+   N +++EIG  V  LD  + +  F   + P+        P+ L++H   G
Sbjct: 29  IDTETTGISRTNAKLLEIGMIVTNLDGIEEHDRFICPVRPDKLSLYDLDPKVLRMHLDNG 88

Query: 65  ITDEFLKDKPSF---SSIFSEFWDFFNEQNAEWIAH----NAKFDVGFINAELQRINKDP 117
           + D  ++ +P     +++      F + + ++++ H    N  +D+  +  +L      P
Sbjct: 89  LLDTVMETEPEEFGYANVARNLGAFLDTEASQYVLHPAGTNVDYDIDVLTNQL-----GP 143

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
                 +  L+  R+   S+   ++ L   +    +H   H 
Sbjct: 144 HLHPDWLRQLTNHRKLDLST-YRISDLALDHNPYQNHAGTHR 184


>gi|125547686|gb|EAY93508.1| hypothetical protein OsI_15303 [Oryza sativa Indica Group]
          Length = 214

 Score = 48.7 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 40/153 (26%), Gaps = 35/153 (22%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+E TGLD   DRI+EI  +      +                              + 
Sbjct: 74  IDLEMTGLDITKDRILEIACIITDGLKEKV------------------------LQSDIS 109

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIA 130
           +  +   +      +          ++   D+ F+   +  +          + ++ ++ 
Sbjct: 110 ENDAEKQVLDFIRKYIGSATPLIAGNSVYMDLLFLKKYMPHLAAIFSHVIVDVSSISALC 169

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R  P  R                   H A+ D
Sbjct: 170 SRWFPKERKH----------APRKEKNHRAMDD 192


>gi|212710150|ref|ZP_03318278.1| hypothetical protein PROVALCAL_01204 [Providencia alcalifaciens DSM
           30120]
 gi|212687149|gb|EEB46677.1| hypothetical protein PROVALCAL_01204 [Providencia alcalifaciens DSM
           30120]
          Length = 180

 Score = 48.7 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 37/181 (20%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---------NRTFQVFLCPNG 52
           ++KN+   I  D+E TGLD   DRIIEI  +                 ++T +       
Sbjct: 1   MQKNENNLIWIDLEMTGLDPIRDRIIEIATIVTDSNLNILAEGPVIAVHQTEEQL----- 55

Query: 53  RKNSPEALKLHGITDEFLKDK-------PSFSSIFS-EFWD-FFNEQNAEWIAHNAKFDV 103
                  +  H  T+  L ++          + + + EF + +  +  +    ++   D 
Sbjct: 56  ALMDEWNVNTH--TNSGLVERIRKSVISEREAELATIEFLEKWVPKGVSPICGNSVGQDR 113

Query: 104 GFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
            F+   +  +          + TL  +ARR  P        L        S ++ H AL 
Sbjct: 114 RFLFNYMPELESYFHYRYLDVSTLKELARRWKPEI------LA-----GFSKKNTHQALD 162

Query: 163 D 163
           D
Sbjct: 163 D 163


>gi|151943548|gb|EDN61859.1| ribonuclease H [Saccharomyces cerevisiae YJM789]
          Length = 553

 Score = 48.7 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE-- 68
             D E   L  +   +  I  V   +       ++  + P+         +  GIT+E  
Sbjct: 227 ALDCEMC-LSEQGLVLTRISLVNFDNEVI----YEELVKPD-VPIVDYLTRYSGITEEKL 280

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  K +   +  +     +  +   I H+ + D+  +           L    ++DT  
Sbjct: 281 TVGAKKTLREVQKDLLKIISRSD-ILIGHSLQNDLKVMK----------LKHPLVVDTAI 329

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-IKMMVGGSQINFGFK 186
           I   K     +  L  L + +        +H ++ D+    ++  +K++ G   + FG  
Sbjct: 330 IYHHKAGDPFKPSLKYLSETFLNKSIQNGEHDSVEDARACLELTKLKILNG---LAFGIG 386

Query: 187 TNEDRFFKEEKK 198
            N +  F +  +
Sbjct: 387 INTENLFTKLHR 398


>gi|126666943|ref|ZP_01737919.1| oligoribonuclease [Marinobacter sp. ELB17]
 gi|126628659|gb|EAZ99280.1| oligoribonuclease [Marinobacter sp. ELB17]
          Length = 180

 Score = 48.7 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 59/178 (33%), Gaps = 31/178 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL------LDYSKT--NRTFQVFLCPNG 52
           M + N  R +  D+E TGLD + +RIIE+  +        +              +    
Sbjct: 1   MAKGN--RLVWIDLEMTGLDPEQERIIEMATLITDSELNLIAEGPVLAVHQSDTLM---- 54

Query: 53  RKNSPEALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
                   + HG       +TD  + +  +     +   +     ++    ++   D  F
Sbjct: 55  GAMDEWCTRTHGESGLTQRVTDSRISEAEAEQQTLAFLREHLEPGDSPLCGNSIGQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   + ++  +     R +D  +I         + L+ + K+          H AL D
Sbjct: 115 LVKYMPQL--EEFFHYRNLDVSTIKELARRWRPDVLDGVKKQ--------GNHLALDD 162


>gi|115401740|ref|XP_001216458.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114190399|gb|EAU32099.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 872

 Score = 48.7 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 67/201 (33%), Gaps = 28/201 (13%)

Query: 10  IVFDIE---TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +  D E   T G  S+  RI  +G     D           + P+ R       +  GIT
Sbjct: 491 LAMDCEMCITEGGTSELTRISLVGW----DGEVVLDE---LVKPD-RPIIDYLTRFSGIT 542

Query: 67  DEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            E L   P   + + I  +       +    + H+   D+  +             P  +
Sbjct: 543 KEMLD--PVTTTLADIQQKLLSILTPR-TILVGHSLNSDLNAL---------KLTHPFIV 590

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY-GITI-SHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
             T      + P  +  L  L ++Y G  I    + H ++ DS  + ++  +    G + 
Sbjct: 591 DTTFIYPHPRGPPLKCSLRWLTQKYLGKEIQKGETGHDSIEDSRAVLELVKQKCEKGERW 650

Query: 182 NFGFKTNEDRFFKEEKKTVPN 202
                +NE  F +  + + P 
Sbjct: 651 GTSDASNESIFKRLARSSRPG 671


>gi|6321715|ref|NP_011792.1| Rnh70p [Saccharomyces cerevisiae S288c]
 gi|1723780|sp|P53331|REXO1_YEAST RecName: Full=RNA exonuclease 1; AltName: Full=RNase H(70)
 gi|1323503|emb|CAA97306.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|2104899|emb|CAA58898.1| PIE553 [Saccharomyces cerevisiae]
 gi|190406722|gb|EDV09989.1| ribonuclease H [Saccharomyces cerevisiae RM11-1a]
 gi|256272673|gb|EEU07650.1| Rnh70p [Saccharomyces cerevisiae JAY291]
 gi|285812464|tpg|DAA08364.1| TPA: Rnh70p [Saccharomyces cerevisiae S288c]
          Length = 553

 Score = 48.7 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE-- 68
             D E   L  +   +  I  V   +       ++  + P+         +  GIT+E  
Sbjct: 227 ALDCEMC-LSEQGLVLTRISLVNFDNEVI----YEELVKPD-VPIVDYLTRYSGITEEKL 280

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  K +   +  +     +  +   I H+ + D+  +           L    ++DT  
Sbjct: 281 TVGAKKTLREVQKDLLKIISRSD-ILIGHSLQNDLKVMK----------LKHPLVVDTAI 329

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-IKMMVGGSQINFGFK 186
           I   K     +  L  L + +        +H ++ D+    ++  +K++ G   + FG  
Sbjct: 330 IYHHKAGDPFKPSLKYLSETFLNKSIQNGEHDSVEDARACLELTKLKILNG---LAFGIG 386

Query: 187 TNEDRFFKEEKK 198
            N +  F +  +
Sbjct: 387 INTENLFTKLHR 398


>gi|323308906|gb|EGA62139.1| Rnh70p [Saccharomyces cerevisiae FostersO]
          Length = 553

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE-- 68
             D E   L  +   +  I  V   +       ++  + P+         +  GIT+E  
Sbjct: 227 ALDCEMC-LSEQGLVLTRISLVNFDNEVI----YEELVKPD-VPIVDYLTRYSGITEEKL 280

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  K +   +  +     +  +   I H+ + D+  +           L    ++DT  
Sbjct: 281 TVGAKKTLREVQKDLLKIISRSD-ILIGHSLQNDLKVMK----------LKHPLVVDTAI 329

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-IKMMVGGSQINFGFK 186
           I   K     +  L  L + +        +H ++ D+    ++  +K++ G   + FG  
Sbjct: 330 IYHHKAGDPFKPSLKYLSETFLNKSIQNGEHDSVEDARACLELTKLKILNG---LAFGIG 386

Query: 187 TNEDRFFKEEKK 198
            N +  F +  +
Sbjct: 387 INTENLFTKLHR 398


>gi|259146778|emb|CAY80035.1| Rnh70p [Saccharomyces cerevisiae EC1118]
          Length = 553

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE-- 68
             D E   L  +   +  I  V   +       ++  + P+         +  GIT+E  
Sbjct: 227 ALDCEMC-LSEQGLVLTRISLVNFDNEVI----YEELVKPD-VPIVDYLTRYSGITEEKL 280

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  K +   +  +     +  +   I H+ + D+  +           L    ++DT  
Sbjct: 281 TVGAKKTLREVQKDLLKIISRSD-ILIGHSLQNDLKVMK----------LKHPLVVDTAI 329

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-IKMMVGGSQINFGFK 186
           I   K     +  L  L + +        +H ++ D+    ++  +K++ G   + FG  
Sbjct: 330 IYHHKAGDPFKPSLKYLSETFLNKSIQNGEHDSVEDARACLELTKLKILNG---LAFGIG 386

Query: 187 TNEDRFFKEEKK 198
            N +  F +  +
Sbjct: 387 INTENLFTKLHR 398


>gi|330722258|gb|EGH00137.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC2047]
          Length = 130

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 52/115 (45%), Gaps = 15/115 (13%)

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D PSFS++  +       Q    + H++  +  F++A L R  ++ ++   +IDT+++ 
Sbjct: 2   ADAPSFSTLIDKLLAHL--QGKIVVVHHSVIERRFLHAALTRHIQEGIE-FPVIDTMALE 58

Query: 131 RRKHPSSRNDL-NSLCKRYGITI---SHRSK--------HGALLDSHLLSDVYIK 173
            R   + R  L  +L +R  ++I     R++        H A  D+   +++   
Sbjct: 59  ARFTRTIRQTLWRNLTRRRQVSIRLADSRARYHLPYYRQHHAFTDALACAELLQA 113


>gi|207344881|gb|EDZ71873.1| YGR276Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 548

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE-- 68
             D E   L  +   +  I  V   +       ++  + P+         +  GIT+E  
Sbjct: 227 ALDCEMC-LSEQGLVLTRISLVNFDNEVI----YEELVKPD-VPIVDYLTRYSGITEEKL 280

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  K +   +  +     +  +   I H+ + D+  +           L    ++DT  
Sbjct: 281 TVGAKKTLREVQKDLLKIISRSD-ILIGHSLQNDLKVMK----------LKHPLVVDTAI 329

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-IKMMVGGSQINFGFK 186
           I   K     +  L  L + +        +H ++ D+    ++  +K++ G   + FG  
Sbjct: 330 IYHHKAGDPFKPSLKYLSETFLNKSIQNGEHDSVEDARACLELTKLKILNG---LAFGIG 386

Query: 187 TNEDRFFKEEKK 198
            N +  F +  +
Sbjct: 387 INTENLFTKLHR 398


>gi|296087670|emb|CBI34926.3| unnamed protein product [Vitis vinifera]
          Length = 324

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 64/223 (28%), Gaps = 49/223 (21%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
           G D   D    +  ++  +       F  ++ P     +    +  G   EFL+D     
Sbjct: 111 GTDGSLDLCARVCLIDEYENII----FHTYVKPQI-PVTNYRYETTGTRPEFLRDAMPVK 165

Query: 78  SIFSEFWDFF------------NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +  DF               +    + H    D+  +  E   +           D
Sbjct: 166 QVQRKIQDFLCNGEPIWKIRSRGGKARILVGHGLDHDLDCLQMEYPTLMIR--------D 217

Query: 126 TLSIARRKHPSS-RNDLNSLCKRY-------GITISHRSKHGALLDSHLLSDVYIKMMVG 177
           T         S   N L  L + Y       GI   +        D      +Y++M   
Sbjct: 218 TAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYE-------DCVATMRLYMRMRSQ 270

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
             +I       ED     + +   N +  ++ +    R+T +E
Sbjct: 271 SHKI-------EDYPLASDPQNRNNFASGRQSE--LERMTPDE 304


>gi|147810158|emb|CAN71456.1| hypothetical protein VITISV_036419 [Vitis vinifera]
          Length = 351

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 64/223 (28%), Gaps = 49/223 (21%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
           G D   D    +  ++  +       F  ++ P     +    +  G   EFL+D     
Sbjct: 138 GTDGSLDLCARVCLIDEYENII----FHTYVKPQI-PVTNYRYETTGTRPEFLRDAMPVK 192

Query: 78  SIFSEFWDFF------------NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +  DF               +    + H    D+  +  E   +           D
Sbjct: 193 QVQRKIQDFLCNGEPIWKIRSRGGKARILVGHGLDHDLDCLQMEYPTLMIR--------D 244

Query: 126 TLSIARRKHPSS-RNDLNSLCKRY-------GITISHRSKHGALLDSHLLSDVYIKMMVG 177
           T         S   N L  L + Y       GI   +        D      +Y++M   
Sbjct: 245 TAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYE-------DCVATMRLYMRMRSQ 297

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
             +I       ED     + +   N +  ++ +    R+T +E
Sbjct: 298 SHKI-------EDYPLASDPQNRNNFASGRQSE--LERMTPDE 331


>gi|10957521|ref|NP_051628.1| hypothetical protein DR_B0095 [Deinococcus radiodurans R1]
 gi|6460950|gb|AAF12654.1|AE001826_123 hypothetical protein DR_B0095 [Deinococcus radiodurans R1]
          Length = 228

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 13/88 (14%)

Query: 1  MIRKNKMRKIVFDIETT---GLDS--KNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGR 53
          M   N     V D+E T   G     ++  IIEIG V +L+     RT    V + P   
Sbjct: 1  MTLLN-----VVDVEATCWEGEPPAGQHSEIIEIGIV-VLNLETLERTGKRSVMVRPEHS 54

Query: 54 KNSPEALKLHGITDEFLKDKPSFSSIFS 81
          + S    +L GIT E      SF ++  
Sbjct: 55 EVSAFCTRLTGITPEEAASGVSFGAVLR 82


>gi|307176541|gb|EFN66028.1| Exonuclease GOR [Camponotus floridanus]
          Length = 520

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 36/182 (19%)

Query: 5   NKMRKIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           NK R    D E      G +     +I +    + +          F+ PN +       
Sbjct: 360 NKYRICALDCEMCYTEYGFELTRVTVISLEGKVICND---------FVKPNSQILDYN-T 409

Query: 61  KLHGITDEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           +  GIT+E +K K   +   +  +     + +    I HN   D   ++   +++     
Sbjct: 410 RFSGITEEHMKQKSTLTLGQVQRKLLTLISAE-TIVIGHNLASDFRALHIIHKKV----- 463

Query: 119 DPSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                +DT        P  R       L +L +R        + H +  D+    D+ + 
Sbjct: 464 -----VDTTV----LIPDPRGFPYTLGLKALARRLLQRNIQENTHDSREDAQAALDLALH 514

Query: 174 MM 175
            +
Sbjct: 515 YI 516


>gi|225452464|ref|XP_002274475.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 395

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 64/223 (28%), Gaps = 49/223 (21%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
           G D   D    +  ++  +       F  ++ P     +    +  G   EFL+D     
Sbjct: 182 GTDGSLDLCARVCLIDEYENII----FHTYVKPQI-PVTNYRYETTGTRPEFLRDAMPVK 236

Query: 78  SIFSEFWDFF------------NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +  +  DF               +    + H    D+  +  E   +           D
Sbjct: 237 QVQRKIQDFLCNGEPIWKIRSRGGKARILVGHGLDHDLDCLQMEYPTLMIR--------D 288

Query: 126 TLSIARRKHPSS-RNDLNSLCKRY-------GITISHRSKHGALLDSHLLSDVYIKMMVG 177
           T         S   N L  L + Y       GI   +        D      +Y++M   
Sbjct: 289 TAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYE-------DCVATMRLYMRMRSQ 341

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220
             +I       ED     + +   N +  ++ +    R+T +E
Sbjct: 342 SHKI-------EDYPLASDPQNRNNFASGRQSE--LERMTPDE 375


>gi|289672571|ref|ZP_06493461.1| oligoribonuclease [Pseudomonas syringae pv. syringae FF5]
          Length = 178

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 39/180 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNG----- 52
            +NK   I  D+E TGLD   D IIEI  +       T+           +  +      
Sbjct: 1   MQNKQNLIWIDLEMTGLDPDTDVIIEIATI------ITDSELNTLAEGPVIAVHQSDETL 54

Query: 53  RKNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGF 105
            K      + H   G+T    +   S +   ++  +F      E+++    ++   D  F
Sbjct: 55  AKMDEWNTRQHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGALLD 163
           ++  +  +       +  + T              L  L  R+   +     S H AL D
Sbjct: 115 LHRHMPTLENYFHYRNLDVST--------------LKELAARWSPELKFKKGSTHLALDD 160


>gi|31432143|gb|AAP53813.1| CAF1 family ribonuclease containing protein [Oryza sativa Japonica
           Group]
          Length = 1172

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 26/163 (15%)

Query: 43  TFQVFLC---PNGRKNSPEALKLHGITDEFLKD-KPSFSSIFSEFWDFF--NEQNAEWIA 96
            F   +     +G+     + + H +T    +   P F  ++          + +  W+A
Sbjct: 739 NFDFNVNSPKYHGKSIDFLSSQGHDLTQHSKRGVAPEF--VYEGLLRHLPFGDGSVTWVA 796

Query: 97  HNAKFDVGFINAELQR--INKDPLDPSRIIDTLSIARRKHP--------------SSRND 140
            +  +D+ F+   LQ      + L P ++   L   R K P                   
Sbjct: 797 FHGDYDLAFLLRLLQGGDHGGNCLLPPKLATFLQKVREKFPVVYDVRVLGKLVKDGFNGS 856

Query: 141 LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQIN 182
           L +L +  GI  +    H A  D+ L    + K++ + G Q++
Sbjct: 857 LTALAEYLGIPRNGDEHH-AGSDALLTLSCFFKIVSLSGHQMH 898


>gi|50554073|ref|XP_504445.1| YALI0E26939p [Yarrowia lipolytica]
 gi|49650314|emb|CAG80046.1| YALI0E26939p [Yarrowia lipolytica]
          Length = 182

 Score = 48.3 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 56/136 (41%), Gaps = 13/136 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEA---LKLH--- 63
            D E TGLD KND+IIEI  +   D  +      ++  +     K    +   ++ H   
Sbjct: 8   IDCEMTGLDHKNDQIIEICCLLTDDNLQVIDPKGYEAVIHCPKEKLDAMSAWCVEHHGQS 67

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN----EQNA-EWIAHNAKFDVGFINAELQRINKDPL 118
           G+T + ++   + + +  E   +       + A     ++   D  F+  ++ +I++   
Sbjct: 68  GLTQKCIESTKTMTEVEEELLAYIKRFVPRKGAGVLAGNSVHQDRVFLAKDMPKIDEHLH 127

Query: 119 DPSRIIDTLSIARRKH 134
                + ++  A ++H
Sbjct: 128 YRILDVSSIKEAMKRH 143


>gi|294786667|ref|ZP_06751921.1| oligoribonuclease [Parascardovia denticolens F0305]
 gi|294485500|gb|EFG33134.1| oligoribonuclease [Parascardovia denticolens F0305]
          Length = 242

 Score = 48.3 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 57/166 (34%), Gaps = 24/166 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP---EALKLH---G 64
            D E TGLD ++D + E+  V    +    ++   + + P+    +       ++H   G
Sbjct: 26  IDCEMTGLDIEHDELCEVSVVPTDFNLKVLDQGIDLVIKPSQAAVNHMGDFVRRMHASSG 85

Query: 65  ITDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINKDPL 118
           +  E+   L    + + +      F  E     A    +    D  F++  +  +     
Sbjct: 86  LIKEWEQGLSLAEAEARVIDYVKPFLPEDGQGKAHLAGNTIGSDKKFLDRFMPDLMGLLH 145

Query: 119 DPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  + TL  ++RR +P            Y         H AL D
Sbjct: 146 YRTIDVSTLKELSRRWYP----------DVYSQRPVKHGGHRALAD 181


>gi|88855197|ref|ZP_01129862.1| oligoribonuclease [marine actinobacterium PHSC20C1]
 gi|88815725|gb|EAR25582.1| oligoribonuclease [marine actinobacterium PHSC20C1]
          Length = 206

 Score = 48.3 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS---PEALKLH---G 64
            D E TGLD + D ++E+  V    D    +    + + P+            ++H   G
Sbjct: 11  IDCEMTGLDVEIDELVEVAVVITDYDLVPVDEGMSIVIKPSADALEHMGEFVTQMHTSSG 70

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +E L +  S +       ++      N ++A    +    D  F+   + R++     
Sbjct: 71  LIEE-LANGVSLADAEFAVNEYIVKYVPNPRSAPLAGNTIGTDRTFLAKYMPRVDSHLHY 129

Query: 120 PSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            S  + ++  +++R  P          + Y    S    H AL D
Sbjct: 130 RSVDVSSIKELSKRWFP----------RVYFNAPSKDGGHRALAD 164


>gi|332076083|gb|EGI86549.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA41301]
          Length = 683

 Score = 48.3 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 144 LCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           LC+  GI + H   H AL D+   +++ + +    +Q+  G 
Sbjct: 4   LCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 43


>gi|188991408|ref|YP_001903418.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. B100]
 gi|126030541|pdb|2GBZ|A Chain A, The Crystal Structure Of Xc847 From Xanthomonas
           Campestris: A 3-5 Oligoribonuclease Of Dnaq Fold Family
           With A Novel Opposingly-Shifted Helix
 gi|167733168|emb|CAP51366.1| Oligoribonuclease [Xanthomonas campestris pv. campestris]
          Length = 194

 Score = 48.3 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 29/173 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-------DYSK--TNRTFQVF-----LCPNGR 53
           R I  D+E TGLD+  D IIEI  +          +  +     + +          N  
Sbjct: 10  RLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQH 69

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           + S    ++    D  +    + +   +   ++     +    ++   D  F++ ++ R+
Sbjct: 70  RRSGLWQRV---LDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSRL 126

Query: 114 NKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            +     +  + T+  +ARR  P+  +             +  S H AL D  
Sbjct: 127 ERYFHYRNLDVSTIKELARRWAPAVASG-----------FAKSSAHTALSDVR 168


>gi|6857800|ref|NP_002192.2| interferon-stimulated gene 20 kDa protein [Homo sapiens]
 gi|57012967|sp|Q96AZ6|ISG20_HUMAN RecName: Full=Interferon-stimulated gene 20 kDa protein; AltName:
           Full=Estrogen-regulated transcript 45 protein; AltName:
           Full=Promyelocytic leukemia nuclear body-associated
           protein ISG20
 gi|2062680|gb|AAB53416.1| HEM45 [Homo sapiens]
 gi|6759541|emb|CAA61915.2| isg20 [Homo sapiens]
 gi|14043978|gb|AAH07922.1| Interferon stimulated exonuclease gene 20kDa [Homo sapiens]
 gi|30582743|gb|AAP35598.1| interferon stimulated gene 20kDa [Homo sapiens]
 gi|48146001|emb|CAG33223.1| ISG20 [Homo sapiens]
 gi|60656377|gb|AAX32752.1| interferon stimulated gene [synthetic construct]
          Length = 181

 Score = 48.3 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 15/167 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D E  GL     R   +    L++ +      +  F+ P G        ++ G+T +
Sbjct: 8   VAMDCEMVGLGP--HRESGLARCSLVNVHGAVL--YDKFIRPEGEITDYR-TRVSGVTPQ 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     F+    E       +    + H+ K D   +  ++           R    L 
Sbjct: 63  HMVGATPFAVARLEILQLL--KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDR---LLW 117

Query: 129 IARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYI 172
              +     R  L  L +R     I  S    H ++ D+    ++Y 
Sbjct: 118 REAKLDHCRRVSLRVLSERLLHKSIQNSLLG-HSSVEDARATMELYQ 163


>gi|88799304|ref|ZP_01114882.1| hypothetical protein MED297_16898 [Reinekea sp. MED297]
 gi|88777843|gb|EAR09040.1| hypothetical protein MED297_16898 [Reinekea sp. MED297]
          Length = 157

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 21/171 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS--PEA 59
           + +++   ++ DIE +G   K    IEIG V   +      +    + P        P+A
Sbjct: 1   MERHRTPPVIIDIEASGF-GKGSYPIEIG-VATDNG----ESRNWLIRPEDDWTHWQPDA 54

Query: 60  LKLHGITDEFLKDK---PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
            KLHGI  E L ++   P F  + S   + F  +          FD G+++       + 
Sbjct: 55  EKLHGIQRETLIEEGLSPRF--VASALNELF--EGQILYTDGWGFDSGWLSLLFYVAEQK 110

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
            L     +  +    +      N   +L +++G        H A  D+ LL
Sbjct: 111 MLFKLETLPKILSQYQLEHWDENK-AALREKHGFR-----HHSAEDDARLL 155


>gi|71755417|ref|XP_828623.1| phosphotransferase [Trypanosoma brucei TREU927]
 gi|70834009|gb|EAN79511.1| phosphotransferase, putative [Trypanosoma brucei]
          Length = 540

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 68/206 (33%), Gaps = 39/206 (18%)

Query: 9   KIVFDIETTGLDSKN---DRIIE--IGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKL 62
            +V D E T    +      +IE  I  V+  + +  +  FQ ++ P      S    +L
Sbjct: 34  YMVLDFEATCERHQRLEVPEVIEFPIVLVDARNGNTISE-FQQYVRPVVNPQLSQFCTEL 92

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GIT   +    +F  +F+   ++ ++ N        + +  ++       +   + P +
Sbjct: 93  TGITQSVVDRASTFPDVFTAAMNYLHQNNCG----EREINKRYLPVTCGDWDLKTMLPIQ 148

Query: 123 IIDTLSIA---------RRKHPSSRN------------------DLNSLCKRYGITISHR 155
           +   +            RR     +                   DL  +    G+ +  R
Sbjct: 149 VKACIQQGFTVNVPPSLRRWFNIKQYMQRVLSPGLGQTVSQPIRDLPDMMSVLGLEMKGR 208

Query: 156 SKHGALLDSHLLSDVYIKMMVGGSQI 181
             H  + D   ++ V  +++  G  I
Sbjct: 209 -HHSGIDDCRNIAAVLCELIKLGHVI 233


>gi|292622378|ref|XP_002664971.1| PREDICTED: interferon-stimulated 20 kDa exonuclease-like 2-like
           [Danio rerio]
 gi|122891152|emb|CAM12969.1| novel protein [Danio rerio]
 gi|190337234|gb|AAI62775.1| Interferon stimulated exonuclease gene 20-like 2 [Danio rerio]
 gi|190339674|gb|AAI62781.1| Interferon stimulated exonuclease gene 20-like 2 [Danio rerio]
          Length = 321

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 49/176 (27%), Gaps = 26/176 (14%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++ +  D E  G   K  +  E+   ++   D       +  ++ P     +    +  
Sbjct: 133 PIKYLALDCEMVGTGPKGAQ-SELARCSIVSYDGDVV---YDKYVKP-INPVTDYRTRWS 187

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI  + L     F     E            + H    D   +               + 
Sbjct: 188 GIRRQDLLHATPFYHAQKEIVKII--TGKVVVGHAIHNDFKALKYFH--------PAFQT 237

Query: 124 IDT----LSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            DT    L   +   P  +      L     +  I   +R  H ++ D+    ++Y
Sbjct: 238 RDTSRIPLLNEKAGFPEKQCVSLKKLTQAILKRDIQTGYRG-HSSVEDAKATMELY 292


>gi|30584183|gb|AAP36340.1| Homo sapiens interferon stimulated gene 20kDa [synthetic construct]
 gi|60653323|gb|AAX29356.1| interferon stimulated gene 20kDa [synthetic construct]
          Length = 182

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 15/167 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D E  GL     R   +    L++ +      +  F+ P G        ++ G+T +
Sbjct: 8   VAMDCEMVGLGP--HRESGLARCSLVNVHGAVL--YDKFIRPEGEITDYR-TRVSGVTPQ 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     F+    E       +    + H+ K D   +  ++           R    L 
Sbjct: 63  HMVGATPFAVARLEILQLL--KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDR---LLW 117

Query: 129 IARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYI 172
              +     R  L  L +R     I  S    H ++ D+    ++Y 
Sbjct: 118 REAKLDHCRRVSLRVLSERLLHKSIQNSLLG-HSSVEDARATMELYQ 163


>gi|157073895|ref|NP_001096663.1| interferon-stimulated 20 kDa exonuclease-like 2 [Danio rerio]
 gi|126635167|emb|CAM56286.1| novel protein [Danio rerio]
 gi|156230811|gb|AAI52519.1| Interferon stimulated exonuclease gene 20-like 2 [Danio rerio]
          Length = 321

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 49/176 (27%), Gaps = 26/176 (14%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++ +  D E  G   K  +  E+   ++   D       +  ++ P     +    +  
Sbjct: 133 PIKYLALDCEMVGTGPKGAQ-SELARCSIVSYDGDVV---YDKYVKP-INPVTDYRTRWS 187

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GI  + L     F     E            + H    D   +               + 
Sbjct: 188 GIRRQDLLHATPFYHAQKEIVKII--TGKVVVGHAIHNDFKALKYFH--------PAFQT 237

Query: 124 IDT----LSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            DT    L   +   P  +      L     +  I   +R  H ++ D+    ++Y
Sbjct: 238 RDTSRIPLLNEKAGFPEKQCVSLKKLTQAILKRDIQTGYRG-HSSVEDAKATMELY 292


>gi|145223130|ref|YP_001133808.1| oligoribonuclease [Mycobacterium gilvum PYR-GCK]
 gi|145215616|gb|ABP45020.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium gilvum
           PYR-GCK]
          Length = 214

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 59/173 (34%), Gaps = 27/173 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLH- 63
           +   +  D E TGLD K D +IEI   V   + +       V +             +  
Sbjct: 5   RDELVWIDCEMTGLDLKTDLLIEIAVLVTDSELNILGDGLDVVIHAEDSALDSMIDVVTQ 64

Query: 64  -----GITDE----FLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRI 113
                G+ +E     +    +   + +   +   + + A    ++   D GF+  ++ ++
Sbjct: 65  MHTKSGLIEEVRASTVDVATAEDMVMTYIREHVRQAKTAPLAGNSIATDRGFLARDMPKL 124

Query: 114 NKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             D     R+ID  SI    RR +P            +G        H AL D
Sbjct: 125 --DDYLHYRMIDVSSIKELCRRWYPR---------IYFGQP-EKGLAHRALAD 165


>gi|262374198|ref|ZP_06067474.1| oligoribonuclease [Acinetobacter junii SH205]
 gi|262310756|gb|EEY91844.1| oligoribonuclease [Acinetobacter junii SH205]
          Length = 184

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 59/181 (32%), Gaps = 35/181 (19%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNG 52
           M      R I  D+E TGLD+ ND+IIEI  +   D                 + L    
Sbjct: 1   MSSTPDTRLIWIDLEMTGLDTDNDKIIEIATIITDDNLNILAEGPVLAVHQSDLILN--- 57

Query: 53  RKNSPEALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
                   K HG       +    L  + +          + N +++    ++   D  F
Sbjct: 58  -AMDEWNTKQHGQSGLIERVRRSKLSAQDAEQQTLEFLKKWVNPKSSPMCGNSICQDRRF 116

Query: 106 INAELQRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           ++  +  +  +     R +D  S+   A+R  P   + L              + H A+ 
Sbjct: 117 LHRLMPEL--EQFFHYRNLDVSSVKELAKRWRPEIMSGLKK-----------NASHLAMD 163

Query: 163 D 163
           D
Sbjct: 164 D 164


>gi|239917482|ref|YP_002957040.1| oligoribonuclease (3'->5' exoribonuclease) [Micrococcus luteus NCTC
           2665]
 gi|281414027|ref|ZP_06245769.1| oligoribonuclease (3'->5' exoribonuclease) [Micrococcus luteus NCTC
           2665]
 gi|239838689|gb|ACS30486.1| oligoribonuclease (3'->5' exoribonuclease) [Micrococcus luteus NCTC
           2665]
          Length = 208

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 54/164 (32%), Gaps = 23/164 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGR---KNSPEALKLH---G 64
            D E TGL  + D ++E+   +   + +  +    + + P+     +  P    +H   G
Sbjct: 17  IDCEMTGLHPQVDELVEVAVLITDAELNILDEGIDLVIRPSAAAFEQMDPFVRDMHTTSG 76

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAE----WIAHNAKFDVGFINAELQRINKDPLDP 120
           +  E L +        +   ++   +          +    D  F+   +  +       
Sbjct: 77  LLPE-LAEGLELDDAAARVLEYIAARVPAGKGLLAGNTVGQDKLFLARYMPAVVDHLHYR 135

Query: 121 SRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              + T+  +ARR +P          + Y    +    H AL D
Sbjct: 136 IVDVSTVKELARRWYP----------RAYYQAPAKTGGHRALGD 169


>gi|239814490|ref|YP_002943400.1| oligoribonuclease [Variovorax paradoxus S110]
 gi|239801067|gb|ACS18134.1| Exonuclease RNase T and DNA polymerase III [Variovorax paradoxus
           S110]
          Length = 198

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 27/178 (15%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV-------ELLDYSKTNRTFQVFLCPNGRK 54
           ++K+    +  D E +GLD + +R++EI  V         +D           +      
Sbjct: 16  LKKSDQNLVWLDCEMSGLDPEKERLLEIAVVVTGPDLTPRIDGPVLVIHQSDAVLD---A 72

Query: 55  NSPEALKLHG----ITD---EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
                   HG    I       L +  +   +      +     +    +    D  F+ 
Sbjct: 73  MDAWNKGTHGRSGLIDKVKASTLDEAAAEQQLLEFVARYVPRSGSPMCGNTIGQDRRFLV 132

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
             + ++       +  + TL    ++   S                 +  H AL D H
Sbjct: 133 KFMPKLEAYFHYRNLDVSTLKELAKRWKPSAYS----------AFKKQQAHTALADVH 180


>gi|145347988|ref|XP_001418440.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578669|gb|ABO96733.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 189

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 25/167 (14%)

Query: 9   KIVFDIE---TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            +  D E   T    ++  ++  I  V+  D       +   + P     +       GI
Sbjct: 39  FLALDCEFCYT----AEGLQLTRISVVK-EDGEIV---YDKLVKPPTEITNYNTEHS-GI 89

Query: 66  TDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           T E ++  + +   +  E  +    +    I H+ + D+  +           +  + +I
Sbjct: 90  TAEQMEGVQTTLQDVQRELLEMIPCE-TILIGHSLENDLQRLK----------IIHANVI 138

Query: 125 DTLS-IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           DT +    +K    RN L  L +RY         H ++ D+    ++
Sbjct: 139 DTCALYPHKKGAPYRNALRFLTERYLGRKIQEGSHDSVADARATMEL 185


>gi|119897809|ref|YP_933022.1| oligoribonuclease [Azoarcus sp. BH72]
 gi|166215750|sp|A1K5N0|ORN_AZOSB RecName: Full=Oligoribonuclease
 gi|119670222|emb|CAL94135.1| oligoribonuclease [Azoarcus sp. BH72]
          Length = 182

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 31/168 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---------KL 62
            D+E TGL+   DRIIEI  V       T         P    + PE++           
Sbjct: 11  LDMEMTGLEPDRDRIIEIALVITDSQLNTIAE-----APVIAVHQPESVLDAMDDWNKNT 65

Query: 63  HG----ITD---EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           HG    I       + +  + + + +   ++   + +    ++   D  F+   +     
Sbjct: 66  HGKSGLIDRVRASTVSEAEAEARMLAFLQEWVPARTSPMCGNSICQDRRFLARYMPAFEA 125

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                +  + TL    ++                  +  + KH AL D
Sbjct: 126 WFHYRNLDVSTLKELAKRWRPEVYK----------GVDKKGKHEALAD 163


>gi|297663188|ref|XP_002810058.1| PREDICTED: interferon-stimulated 20 kDa exonuclease-like 2-like
           [Pongo abelii]
          Length = 354

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 58/183 (31%), Gaps = 19/183 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   K   +  +    +++Y+  +  +  ++ P          +  GI  
Sbjct: 179 KMVAIDCEMVGTGPKGH-VSSLARCSIVNYNG-DVLYDEYILPPCHIVDYR-TRWSGIRK 235

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +   F     +            + H    D   +          P   +R    +
Sbjct: 236 QHMVNATPFKIARGQILKIL--TGKIVVGHAIHNDFKALQYFH------PKSLTRDTSHI 287

Query: 128 SIARRKHPSSRN---DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
               RK     N    L  L K+     I +  +S H ++ D+    ++Y K++    + 
Sbjct: 288 PPLNRKADCPENATMSLKHLTKKLLNRDIQV-GKSGHSSVEDAQATMELY-KLVEAEWEE 345

Query: 182 NFG 184
           +  
Sbjct: 346 HLA 348


>gi|114658744|ref|XP_001165204.1| PREDICTED: interferon stimulated gene 20kDa isoform 3 [Pan
           troglodytes]
 gi|114658746|ref|XP_001165240.1| PREDICTED: interferon stimulated gene 20kDa isoform 4 [Pan
           troglodytes]
 gi|114658748|ref|XP_001165270.1| PREDICTED: interferon stimulated gene 20kDa isoform 5 [Pan
           troglodytes]
          Length = 181

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 53/166 (31%), Gaps = 13/166 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E  GL    +  +   ++  +  +     +  F+ P G        ++ G+T + 
Sbjct: 8   VAMDCEMVGLGPHRESGLARCSLVNIHGAVL---YDKFIRPEGEITDYR-TRVSGVTPQH 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +     F+    E       +    + H+ K D   +  ++           R    L  
Sbjct: 64  MVGATPFAVARLEILQLL--KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDR---LLWR 118

Query: 130 ARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYI 172
             +     R  L  L +R     I  S    H ++ D+    ++Y 
Sbjct: 119 EAKLDHCRRVSLRVLSERLLHKSIQNSLLG-HSSVEDARATMELYQ 163


>gi|58177183|pdb|1WLJ|A Chain A, Human Isg20
          Length = 189

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 15/167 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D E  GL     R   +    L++ +      +  F+ P G        ++ G+T +
Sbjct: 8   VAMDCEMVGLGP--HRESGLARCSLVNVHGAVL--YDKFIRPEGEITDYR-TRVSGVTPQ 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     F+    E       +    + H+ K D   +  ++           R    L 
Sbjct: 63  HMVGATPFAVARLEILQLL--KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDR---LLW 117

Query: 129 IARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYI 172
              +     R  L  L +R     I  S    H ++ D+    ++Y 
Sbjct: 118 REAKLDHCRRVSLRVLSERLLHKSIQNSLLG-HSSVEDARATMELYQ 163


>gi|289706257|ref|ZP_06502619.1| exonuclease [Micrococcus luteus SK58]
 gi|289556980|gb|EFD50309.1| exonuclease [Micrococcus luteus SK58]
          Length = 208

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 54/164 (32%), Gaps = 23/164 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGR---KNSPEALKLH---G 64
            D E TGL  + D ++E+   +   + +  +    + + P+     +  P    +H   G
Sbjct: 17  IDCEMTGLHPQVDELVEVAVLITDAELNILDEGIDLVIRPSAAALEQMDPFVRDMHTTSG 76

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAE----WIAHNAKFDVGFINAELQRINKDPLDP 120
           +  E L +        +   ++   +          +    D  F+   +  +       
Sbjct: 77  LLPE-LAEGLELDDAAARVLEYIAARVPAGKGLLAGNTVGQDKLFLARYMPAVVDHLHYR 135

Query: 121 SRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              + T+  +ARR +P          + Y    +    H AL D
Sbjct: 136 IVDVSTVKELARRWYP----------RAYYQAPAKTGGHRALGD 169


>gi|221507789|gb|EEE33376.1| exonuclease domain-containing protein, putative [Toxoplasma gondii
           VEG]
          Length = 930

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 64/195 (32%), Gaps = 26/195 (13%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP-SFSSIFSEFWD 85
            E+G V ++D + T     VF+ P G        +  G+ +  L     S   +      
Sbjct: 97  TEVGRVSVIDSNGTA-LLDVFVRPKG-PIIDYLTRFSGLEERHLASAELSLEDVHRRLSQ 154

Query: 86  FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSL- 144
               + A  + H+ + D+  +           L   R IDT  +        +N L  L 
Sbjct: 155 ILPPE-AVLVGHSLENDLHALK----------LVHLRCIDTSILYPHAILGLKNSLKRLV 203

Query: 145 -CKRYGITISHRSKHGALLDSHLLSDV----------YIKMMVGGSQINFGFKTNEDRFF 193
            C      +     H +L D+    ++          +  +      +    +    R  
Sbjct: 204 NCFLPEQKLRRERGHDSLEDARATLNLAKLKVQRGPEFGVLSKQYEPLGRALRAVASRAL 263

Query: 194 KEEKKTVPNISLLKR 208
           + E++T  +IS  +R
Sbjct: 264 RCEQQTREDISPNER 278


>gi|194771098|ref|XP_001967613.1| GF13954 [Drosophila ananassae]
 gi|190622727|gb|EDV38251.1| GF13954 [Drosophila ananassae]
          Length = 282

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 10  IVFDIETTG------LDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK 61
           I  D E T          +   IIE    +  L   K    F  ++ P    + S    +
Sbjct: 67  IAVDFEATCWEKQAPPQWREAEIIECPAVLVNLKTGKIEAEFHKYIMPIESPRLSTYCTE 126

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQ------------------NAEWIAHN-AKFD 102
           L G   +    +    +    F ++  ++                  N  ++      F 
Sbjct: 127 LTGFQQKTGDGEVPLQTALMMFHEWLRKELRARNLTLPKMNKSDVLGNCAFVTWTDWDFG 186

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           +       ++  +     ++ ID  +I R  +     + +      G+    R  H  + 
Sbjct: 187 ICLAKECTRKRMRKASYFNQWIDVRAINRSWYKYRPCNFSDALSHVGLAFEGR-AHWGID 245

Query: 163 DSHLLSDVYIKMMVGGS 179
           D+  L  +  KM++ G+
Sbjct: 246 DAKNLGALMCKMVIDGA 262


>gi|268577621|ref|XP_002643793.1| Hypothetical protein CBG02004 [Caenorhabditis briggsae]
          Length = 607

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 19/163 (11%)

Query: 25  RIIEIGAVELLDYSKTNRT---FQVFLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIF 80
            II+   + L    K  R    F  F+ P      S       GI+   +     F  +F
Sbjct: 31  EIIQFSVIVLNTKEKKIREDVKFDKFVRPIINPTLSDYCTNHTGISQNTVDSAEPFPVVF 90

Query: 81  SEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINKDPLD--PSRIIDTLSIARRK 133
            EF  +  E +       ++  + + D+ FI      + K PL     + +D  +  ++ 
Sbjct: 91  EEFSAWLQENDFQETRYAFVVFSRR-DLWFIAQYQFLLVKQPLPAMFKQWVDMNATMKKA 149

Query: 134 HPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                        +  +   Y I     + H A+ + H L+ +
Sbjct: 150 QQGQDYHRPEENIIQDMSNIYNIPYEG-TAHNAMDNCHFLAKI 191


>gi|139439051|ref|ZP_01772503.1| Hypothetical protein COLAER_01509 [Collinsella aerofaciens ATCC
           25986]
 gi|133775398|gb|EBA39218.1| Hypothetical protein COLAER_01509 [Collinsella aerofaciens ATCC
           25986]
          Length = 322

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITD 67
            DIETTG   +   II +G   +    D    +        P+  +     L  +H IT 
Sbjct: 136 IDIETTGRAPERGYIINVGWEIMELTSDAVPHDAEAHYCGLPDIYRGEDVPLSNIHHITW 195

Query: 68  EFLKDKPSF---SSIFSEFWDFFNEQNAEWIAHNAKFDVGFI------NAELQRINKDPL 118
           + +  K  F     +  +      +    ++AHNA F+  +        AE +R  K  +
Sbjct: 196 DDIDGKKPFRENKELQKQLLKLMKK--YPYMAHNAAFEDSWFKIHLDGYAEARRAGKIIV 253

Query: 119 DPSRIID-TLSIARRKHPSS--RNDLNSLCKRYG-ITISHRSKHGALLDSHL 166
             SR I  +L    R  P       L +  +R G +      +H  L D+ L
Sbjct: 254 IDSRQICRSLDADVRSLPRESAPAALENWARRRGTLAADANEQHLGLDDTDL 305


>gi|114332250|ref|YP_748472.1| oligoribonuclease [Nitrosomonas eutropha C91]
 gi|122313081|sp|Q0ADS5|ORN_NITEC RecName: Full=Oligoribonuclease
 gi|114309264|gb|ABI60507.1| Exonuclease, RNase T and DNA polymerase III [Nitrosomonas eutropha
           C91]
          Length = 181

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 29/167 (17%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRK--NSPEALKLHG--- 64
            D+E TGL+   D IIEI  V       T     V +   P+             HG   
Sbjct: 11  IDMEMTGLNPNTDCIIEIALVVTDAQLNTVAEAPVLVISQPDSVLNGMDKWNQSTHGKSG 70

Query: 65  -ITD---EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            I       L +  + + + +    +     +    ++   D  F+   + ++  +    
Sbjct: 71  LIDKVKASTLSEAEAEARMLAFLAPYVPADISPMCGNSICQDRRFLARCMPQL--EAYFH 128

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH----RSKHGALLD 163
            R +D             + L  L KR+   ++     + KH AL D
Sbjct: 129 YRNLDV------------STLKELAKRWKPEVAQGFNKQGKHEALAD 163


>gi|301109499|ref|XP_002903830.1| exonuclease, putative [Phytophthora infestans T30-4]
 gi|262096833|gb|EEY54885.1| exonuclease, putative [Phytophthora infestans T30-4]
          Length = 806

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 25/169 (14%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDEF 69
             D E    D      +E+  V  +D   T    +   + P     +    K  GI++E 
Sbjct: 457 ALDCEMCETDIG----MELTRVTAVD--ITGNVVYDQLVKPQSTIINYH-TKFSGISEET 509

Query: 70  LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-- 126
           L+D K + + +  +       ++   + H+   D+  +      I           DT  
Sbjct: 510 LRDTKYTLADVQRDLTTRLLFKDTILVGHSLTSDLRALRLVHSTIG----------DTAI 559

Query: 127 LSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYI 172
           L   +R  P  R  L  L K Y    I I  ++ H +  D+    ++ +
Sbjct: 560 LYPHQRGFPF-RTSLKYLTKTYLKKDIQIQTQAGHDSAEDAIAALELLV 607


>gi|254427614|ref|ZP_05041321.1| exonuclease superfamily [Alcanivorax sp. DG881]
 gi|196193783|gb|EDX88742.1| exonuclease superfamily [Alcanivorax sp. DG881]
          Length = 181

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 41/173 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEAL-------KLH 63
            D+E TGL  +NDRIIEI  +       T+    V    P    +  +AL          
Sbjct: 11  IDLEMTGLSPENDRIIEIATI------VTDAELNVLAEGPVLAVHQSDALLDGMDEWNTT 64

Query: 64  GITD---------EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
              +           + D  + S   +    +     +    ++   D  F+   + ++ 
Sbjct: 65  HHNNSGLVARVKASMVNDAAAESQTIAFLEQYVEAGMSPMCGNSICQDRRFLANYMPQL- 123

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGALLD 163
            +     R +D             + L  L +R+   I    S  +KH AL D
Sbjct: 124 -EAFFHYRNLDV------------STLKELARRWKPEILPGFSKENKHLALDD 163


>gi|194748006|ref|XP_001956440.1| GF24592 [Drosophila ananassae]
 gi|190623722|gb|EDV39246.1| GF24592 [Drosophila ananassae]
          Length = 305

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 55/175 (31%), Gaps = 16/175 (9%)

Query: 3   RKNKMRKIVFDIETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +  + R +  D E  G+  + ++D +  +  V  +     ++     + P          
Sbjct: 126 KAQRNRYLAMDCEMVGVGPNGQDDMLARVSIVNRVGEVLLDK----HVKPRQEVTDYR-T 180

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            + GI  + + +   F+ + +E            + H  + D+  +N      +      
Sbjct: 181 SVSGIRPQDIANGEDFAVVQNEVVRLL--HGKILVGHAIRNDIAVLNIRHPFEHIRDTSR 238

Query: 121 SRIIDTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            + +  L             L  L     G  I     H ++ D+     +Y ++
Sbjct: 239 YKPLCRLVSN-----GHTPSLKRLTMAVLGQEIQTGE-HNSVEDARAAMGIYNRI 287


>gi|226952875|ref|ZP_03823339.1| oligoribonuclease [Acinetobacter sp. ATCC 27244]
 gi|226836386|gb|EEH68769.1| oligoribonuclease [Acinetobacter sp. ATCC 27244]
          Length = 186

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 35/181 (19%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNG 52
           M      R I  D+E TGLD+ ND+IIEI  +   D                 V L    
Sbjct: 1   MSSTPDTRLIWIDLEMTGLDTDNDKIIEIATIITDDNLNILAEGPVLAVHQSDVILN--- 57

Query: 53  RKNSPEALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
                   K HG       +    L  + +          + N +++    ++   D  F
Sbjct: 58  -AMDEWNTKQHGQSGLIERVRRSKLTAQDAEQQTLEFLKKWVNPKSSPMCGNSICQDRRF 116

Query: 106 INAELQRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           ++  +  +  +     R +D  S+   A+R  P   + L              + H A+ 
Sbjct: 117 LHRLMPEL--EQFFHYRNLDVSSVKELAKRWRPEIMSGLKK-----------NASHLAMD 163

Query: 163 D 163
           D
Sbjct: 164 D 164


>gi|238695626|ref|YP_002922653.1| P39 [Xanthomonas phage phiL7]
 gi|190343993|gb|ACE75779.1| P39 [Xanthomonas phage phiL7]
          Length = 282

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 82  EFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND 140
                  E +   +AHN  KFD+  I + +      P+  +RI+DTL  +R+    + + 
Sbjct: 92  ALAKLLTEAD-VVVAHNGKKFDLKKIRSRMAHNKLKPIPDTRIVDTLLESRKVFGHTSHK 150

Query: 141 LNSLCKRYG 149
           L  L   +G
Sbjct: 151 LAYLTTHFG 159


>gi|195161924|ref|XP_002021806.1| GL26302 [Drosophila persimilis]
 gi|194103606|gb|EDW25649.1| GL26302 [Drosophila persimilis]
          Length = 335

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 28/147 (19%)

Query: 9   KIVFDIETTGLDSKNDR---IIEI------GAVELLDYSK--------------TNRTFQ 45
             V D+ETT L + N+    I E+       A+   + +K                    
Sbjct: 21  FAVLDLETTNLPANNNNRVGITELCIYAFEAALLKQNGTKGSGENKVPVPPLPRVVHKLN 80

Query: 46  VFLCPNGRKNSPEALKLHGITDEFLKDKPSFSS-IFSEFWDFFNEQNAE--WIAHN-AKF 101
           V   P+     P+A +  G+ +  L+ +            +F     +    +AHN   F
Sbjct: 81  VLFQPS-MMVHPDAERFTGLNNYILERESKLDENSAQMILNFLKHLPSPVCLVAHNGWHF 139

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLS 128
           D   +     ++N +       +D+L 
Sbjct: 140 DFPIVRKVFAKLNLEFSPTLSCVDSLR 166


>gi|169629793|ref|YP_001703442.1| hypothetical protein MAB_2709c [Mycobacterium abscessus ATCC 19977]
 gi|169241760|emb|CAM62788.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 182

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 22/176 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---SPEALKLH 63
           M  +  D ETTGL  +     EI  +      +  R   + +           P  L++ 
Sbjct: 1   MALVFLDTETTGLHRER-EPWEIAIIRRTAAGQ--RQLHLCVDVQDLDLAAADPAGLQIS 57

Query: 64  GI--TDEFLKDKP-------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           G       ++ +P         +   S   ++     A  +    +FD   +        
Sbjct: 58  GFHKRHPQVRLRPLQFPRVFRAAEAVSLVAEW--TAGATIVGVIPQFDTECLARMFLAHG 115

Query: 115 KDPLDPSRIID----TLSIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSH 165
             P     ++D    T +  R +  +   D ++L +++G+ T S   +H AL D+ 
Sbjct: 116 VGPTWNPELVDVVATTAARLRDRGLTPDADYSNLSQQFGVKTPSAAQRHTALGDAR 171


>gi|67902136|ref|XP_681324.1| hypothetical protein AN8055.2 [Aspergillus nidulans FGSC A4]
 gi|40740487|gb|EAA59677.1| hypothetical protein AN8055.2 [Aspergillus nidulans FGSC A4]
 gi|259480812|tpe|CBF73795.1| TPA: RNA binding protein (Arp), putative (AFU_orthologue;
           AFUA_5G02160) [Aspergillus nidulans FGSC A4]
          Length = 609

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 80/258 (31%), Gaps = 60/258 (23%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAVELLDYSKTNRTFQ---VFLCPNGRKNSPE 58
           R IV  + TT    G+    D   +IE+G + L   +KT        V + P     +P 
Sbjct: 13  RYIVVHVATTCDEHGVYVTKDSAEVIELGWILL--DTKTCEELHRESVLVKPVNTPITPL 70

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-------INAELQ 111
              L  +T E ++   SF    + F  F  E   +      K +  F       +  +L 
Sbjct: 71  CTSLTTLTWEHVRSAGSFRDAINRFDAFAQEHLLD-----RKLEFAFVTLDSWDLRVQLP 125

Query: 112 RINKD-------PLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGI------- 150
           R  +D        L  SR  D  +  +R         P   + L+++C    +       
Sbjct: 126 REARDKAVVLPAYLQHSRTFDLRTEYQRWQTHHPESLPFGPSSLSNICAALEVEPVQSSA 185

Query: 151 TISHR-SKH----------GALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT 199
            I H    H           A+ ++  L+ V   ++      +                 
Sbjct: 186 PIKHNLPFHLQALAPASPRRAMDEAVTLARVLRGLIRKSQPAHEH-----PEILTRPMDA 240

Query: 200 VPNISLLKRDKPLFTRIT 217
             ++     ++     ++
Sbjct: 241 RADVRAFLAERSKVLHLS 258


>gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38]
 gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38]
          Length = 950

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 32/148 (21%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M        + FD ETTG+D+ N  ++ +                 ++            
Sbjct: 369 MQNLLNQTSVCFDTETTGIDALNAELVGMSFSFEKGKG-------FYV------------ 409

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                   F +D+    ++  +F  FF  +N E I  N K+D+  ++    ++       
Sbjct: 410 -------PFPEDQEEAQTLIEKFRPFFENENIEKIGQNMKYDLKILSNYNMQVKGKLF-- 460

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRY 148
               DT+      +P  R++++ L + Y
Sbjct: 461 ----DTMIAHYLINPDMRHNMDVLSETY 484


>gi|220929605|ref|YP_002506514.1| exonuclease RNase T and DNA polymerase III [Clostridium
          cellulolyticum H10]
 gi|219999933|gb|ACL76534.1| Exonuclease RNase T and DNA polymerase III [Clostridium
          cellulolyticum H10]
          Length = 186

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 7/85 (8%)

Query: 10 IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KL 62
          I  D E T  D           IIEIGAV      K    F   + P       +   +L
Sbjct: 3  IFVDFEATCWDKNEKYKQPHAEIIEIGAVATGKDLKEIGKFSAVVKPTIEPLLSDYCKEL 62

Query: 63 HGITDEFLKDKPSFSSIFSEFWDFF 87
           G++   +++   F+     F+ + 
Sbjct: 63 TGLSQTDVENGIEFNRAIDLFYQWI 87


>gi|315443587|ref|YP_004076466.1| oligoribonuclease (3'->5' exoribonuclease) [Mycobacterium sp.
           Spyr1]
 gi|315261890|gb|ADT98631.1| oligoribonuclease (3'->5' exoribonuclease) [Mycobacterium sp.
           Spyr1]
          Length = 206

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 27/167 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLH------G 64
            D E TGLD K D +IEI   V   + +       V +             +       G
Sbjct: 3   IDCEMTGLDLKTDLLIEIAVLVTDSELNILGDGLDVVIHAEDSALDSMIDVVTQMHTKSG 62

Query: 65  ITDE----FLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +E     +    +   + +   +   + + A    ++   D GF+  ++ ++  D   
Sbjct: 63  LIEEVRASTVDVATAEDMVMTYIREHVRQAKTAPLAGNSIATDRGFLARDMPKL--DDYL 120

Query: 120 PSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             R+ID  SI    RR +P            +G        H AL D
Sbjct: 121 HYRMIDVSSIKELCRRWYPR---------IYFGQP-EKGLAHRALAD 157


>gi|107022156|ref|YP_620483.1| oligoribonuclease [Burkholderia cenocepacia AU 1054]
 gi|116689101|ref|YP_834724.1| oligoribonuclease [Burkholderia cenocepacia HI2424]
 gi|170732389|ref|YP_001764336.1| oligoribonuclease [Burkholderia cenocepacia MC0-3]
 gi|254245960|ref|ZP_04939281.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia
           cenocepacia PC184]
 gi|123371764|sp|Q1BXZ5|ORN_BURCA RecName: Full=Oligoribonuclease
 gi|166215751|sp|A0K5Q4|ORN_BURCH RecName: Full=Oligoribonuclease
 gi|105892345|gb|ABF75510.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
           cenocepacia AU 1054]
 gi|116647190|gb|ABK07831.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
           cenocepacia HI2424]
 gi|124870736|gb|EAY62452.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia
           cenocepacia PC184]
 gi|169815631|gb|ACA90214.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
           cenocepacia MC0-3]
          Length = 206

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 58/173 (33%), Gaps = 25/173 (14%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVE---LLDYSKTNRTFQVFLCPNG-RKNSPEA 59
           +N++  +  D+E TGLD  NDRIIEI  V     LD +     F +        K     
Sbjct: 15  RNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWN 74

Query: 60  LKLHGITDEFLKDKPSFSSI---------FSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
              HG     L D+   S++          +    + +   +    ++   D  F+   +
Sbjct: 75  KSTHG--RSGLIDRVRASTVTEAEAAAQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWM 132

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
               +     +  + TL    R+   +                 R+ H AL D
Sbjct: 133 PEFERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 175


>gi|255558446|ref|XP_002520248.1| rnase h, putative [Ricinus communis]
 gi|223540467|gb|EEF42034.1| rnase h, putative [Ricinus communis]
          Length = 572

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 64/174 (36%), Gaps = 24/174 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E   +  +   +  +  V++      ++     + P+         +  GIT E 
Sbjct: 218 LALDCEMC-ITKEGFELTRVTVVDVKGQVVLDK----LVKPSN-PIIDYNTRFSGITCEM 271

Query: 70  LKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L   P+    +  +F    +++    I H+ + D+  +           +    +IDT  
Sbjct: 272 LNGVPTSLKDVQEDFLKLVHKE-TLLIGHSLENDLSALK----------ISHGLVIDTAV 320

Query: 129 IARR-KHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDV-YIKMMVG 177
           + +  +  S +  L  L K++    I  S    H ++ D+    ++  +K+  G
Sbjct: 321 LYKHPRGGSYKTALRVLAKKFLSREIQQSGDG-HDSIEDARAAMELALLKIKNG 373


>gi|297815068|ref|XP_002875417.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321255|gb|EFH51676.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 357

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 42/151 (27%), Gaps = 36/151 (23%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF------------NEQN 91
           F  ++ P+    S    +  GI  E L+D      +  +  +F               + 
Sbjct: 168 FHTYVKPSMAVTSYR-YETTGIRPENLRDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKA 226

Query: 92  AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCK---- 146
              + H    D+  +  E           S I D+         S   N L  L +    
Sbjct: 227 RILVGHGLDHDLDCLQLEY--------PSSMIRDSAKYPPLMKTSKLSNSLKYLTQAYLG 278

Query: 147 ---RYGITISHRSKHGALLDSHLLSDVYIKM 174
               +GI   +        D      +Y +M
Sbjct: 279 YDVHFGIQDPYE-------DCVATMRLYTRM 302


>gi|225350877|ref|ZP_03741900.1| hypothetical protein BIFPSEUDO_02451 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158333|gb|EEG71575.1| hypothetical protein BIFPSEUDO_02451 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 216

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 28/171 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNG---RKNSPEALKLH 63
           R I  D E TGLD  +D + EI  V    D +  +      + P+       +     +H
Sbjct: 16  RLIWIDCEMTGLDIFHDELCEISVVPTDFDLNVLDEGIDFVIKPSNAAVANMNDFVRAMH 75

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-----AHNAKFDVGFINAELQRINK 115
              G+ +E  ++  S      +  ++      + +      ++   D  F++  +   N 
Sbjct: 76  TRSGLINE-WENGLSVEEAERKVTEYVARFTPDGVKPLLAGNSIGSDKKFLDRYMP--NL 132

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 R+ID  +    ARR +P            Y         H AL D
Sbjct: 133 MEHLHYRVIDVSTFKELARRWYP----------AVYNNRPPKNGGHRALAD 173


>gi|10945260|dbj|BAB16921.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|17385659|dbj|BAB78612.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 334

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 60/216 (27%), Gaps = 27/216 (12%)

Query: 21  SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80
           + +D  +++ A   +   +       F+ P+    +       GI  E L+D  +     
Sbjct: 114 AGSDGSLDVCARVCVVDEQERVVLDTFVKPHI-PVTHYRYDTTGIRPEHLRDAMTPKQAA 172

Query: 81  SEFWDFF------------NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               +                +    + H    D+  +  +     K        +   S
Sbjct: 173 RRVQELLLNGEPAWKARSSRGRARILVGHGLDHDLESLGMDYPEYLKRDTARYPALMKTS 232

Query: 129 IARRKHPSSRNDLNSLCKR---YGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +R       N L  L      Y I I+ R  H    D      +Y +M  G        
Sbjct: 233 NSRL-----SNSLKYLTLAYLGYHIQIAGRHHHP-YDDCVAALRLYRRM-RGARP---HT 282

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
             +          T        R + L  R++ EEL
Sbjct: 283 CRDAGVGPHAPPPTPAEAFPAWRQREL-ERMSPEEL 317


>gi|254468761|ref|ZP_05082167.1| oligoribonuclease [beta proteobacterium KB13]
 gi|207087571|gb|EDZ64854.1| oligoribonuclease [beta proteobacterium KB13]
          Length = 184

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 21/173 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK----NSP 57
           + KN    I  D+E TGL+   D+IIE+  +    + +      V++     +       
Sbjct: 1   MTKNNNNLIWIDMEMTGLNPVTDKIIEVAVIVTDPHLEIIAEAPVYVIKQSNELLDSMDA 60

Query: 58  EALKLH---GITDE----FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
                H   G+ D+     + +  +   + +    + ++  +    ++   D  F+   +
Sbjct: 61  WNTNTHSKSGLIDKVKHSQITENVAERELINFLSQYVDKNKSPMCGNSICQDRRFMANYM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++  +     R +D +S+ +      +  L       G      +KH AL D
Sbjct: 121 PQL--ESYFHYRNLD-VSVFKELAKRWKTSL------LG-QFKKSAKHEALAD 163


>gi|161525395|ref|YP_001580407.1| oligoribonuclease [Burkholderia multivorans ATCC 17616]
 gi|189349868|ref|YP_001945496.1| oligoribonuclease [Burkholderia multivorans ATCC 17616]
 gi|221201292|ref|ZP_03574332.1| oligoribonuclease [Burkholderia multivorans CGD2M]
 gi|221206254|ref|ZP_03579267.1| oligoribonuclease [Burkholderia multivorans CGD2]
 gi|160342824|gb|ABX15910.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
           multivorans ATCC 17616]
 gi|189333890|dbj|BAG42960.1| oligoribonuclease [Burkholderia multivorans ATCC 17616]
 gi|221173563|gb|EEE05997.1| oligoribonuclease [Burkholderia multivorans CGD2]
 gi|221179142|gb|EEE11549.1| oligoribonuclease [Burkholderia multivorans CGD2M]
          Length = 211

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 49/185 (26%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +N++  +  D+E TGLD  NDRIIEI  V       TN T +  +   G         +H
Sbjct: 15  RNELNLVWLDMEMTGLDPDNDRIIEIAVV------VTNSTLE--IAVEGPV-----FAIH 61

Query: 64  GITDEFLKDKPSFSS-------IFSEFWD------------------FFNEQNAEWIAHN 98
             +DE L     ++        +                        +     +    ++
Sbjct: 62  Q-SDETLAKMDDWNKSTHGRSGLIDRVRASTVTEAEAAAQLQAFLAQYVPPGKSPMCGNS 120

Query: 99  AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
              D  F+   +  + +     +  + TL    R+   +                 R+ H
Sbjct: 121 ICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMH 170

Query: 159 GALLD 163
            AL D
Sbjct: 171 TALAD 175


>gi|331000795|ref|ZP_08324441.1| oligoribonuclease [Parasutterella excrementihominis YIT 11859]
 gi|329570323|gb|EGG52056.1| oligoribonuclease [Parasutterella excrementihominis YIT 11859]
          Length = 204

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 39/179 (21%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA----- 59
           N+   I  D+E TGL+ + +RI+E+ AV       T+    V           +A     
Sbjct: 27  NENNLIWMDLEMTGLEPQINRILEMAAV------ITDPQLNVIAEGPVVAIHQDASILSN 80

Query: 60  -----LKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFIN 107
                   H   G+ +  L+ K +       F DFF+       +    ++   D  F+ 
Sbjct: 81  MDSWNTATHTRSGLVNRCLESKVTEDEAAQIFIDFFSKYVPAGKSPLCGNSIGQDRRFMA 140

Query: 108 AELQRINKDPLDPSRIIDTL---SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
               R+  +     R +D        +R  P        + K+Y  T    S+H AL D
Sbjct: 141 RWTPRL--EQFFHYRNLDVSSFKECVKRWAPE-------VMKKYQKT----SRHEALSD 186


>gi|194035983|ref|XP_001924782.1| PREDICTED: Interferon stimulated exonuclease gene 20kDa-like 2 [Sus
           scrofa]
          Length = 343

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 55/173 (31%), Gaps = 14/173 (8%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +K   + +  D E  G   K   +  +    +++Y+  +  +  ++ P          + 
Sbjct: 163 QKGPSKMVAIDCEMVGTGPKGH-VSSLARCSIVNYNG-DVLYDEYILPPCHIVDYR-TRW 219

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI  + + +   F    S+            + H    D   +     +     L    
Sbjct: 220 SGIRKQHMVNATPFKIARSQILKIL--TGKIVVGHAIHNDFKALQYFHPK----SLTRDT 273

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRY---GITISHRSKHGALLDSHLLSDVY 171
               L   +   P +    L  L K+     I +  +S H ++ D+    ++Y
Sbjct: 274 SHIPLLNRKADCPENATMSLKRLTKKLLDRDIQV-GKSGHSSVEDAQATMELY 325


>gi|149377361|ref|ZP_01895106.1| hypothetical protein MDG893_17757 [Marinobacter algicola DG893]
 gi|149358373|gb|EDM46850.1| hypothetical protein MDG893_17757 [Marinobacter algicola DG893]
          Length = 178

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 25/179 (13%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNG--RKNSPEA 59
            + +      D E + LD      IE+G          + T   + + P+   +  S  A
Sbjct: 1   MRTRTSPAFIDFEASSLDLIASYPIEVGIC------LPDGTLHSWLIQPHVLWQDWSESA 54

Query: 60  LKLHGITDEFLK-DKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINK 115
            ++HGIT E LK +    S + +      + Q   +A        FD  +++   +  N 
Sbjct: 55  EQVHGITRETLKTEGTPVSEVAAHLNQLLSGQVFCDA------WTFDSFWLHRLFRAANT 108

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                   I  L  A +    S +    +  R G+ +     H A  D+ +L   + ++
Sbjct: 109 RASFQLESISMLLDANQVRHWSGSR-QQVINRLGLPV-----HRAANDALILHRTWEEI 161


>gi|291232399|ref|XP_002736133.1| PREDICTED: fusilli-like [Saccoglossus kowalevskii]
          Length = 636

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 57/180 (31%), Gaps = 32/180 (17%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           V D+ET                     +K     Q F+  +  + S E     GI +E +
Sbjct: 37  VIDVET---------------------NKVVSVKQSFVKADHTEVSEEYCSELGIKEEAI 75

Query: 71  KDKPSFSSIFSEFWDFFN-----EQNA--EWIAHNAKFDVGFINAELQRINKD-PLDPSR 122
           K+     S+  +            + A   +    +      ++ +      + P    +
Sbjct: 76  KNAEPLESVIQQLDTHIRNELNSTEGATFCFCIDGSLHLRQCLHPQCANKGIELPEHYYQ 135

Query: 123 IIDTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             D     RR +  +   N L  +     I I+  ++H A  D   +  +  +++  G +
Sbjct: 136 FFDIRKEFRRFYTLAPQVNSLKEMADHLKIDITPNTRH-ATGDVRAIGLLVQRLISDGHK 194


>gi|291327132|ref|ZP_06127108.2| oligoribonuclease [Providencia rettgeri DSM 1131]
 gi|291311676|gb|EFE52129.1| oligoribonuclease [Providencia rettgeri DSM 1131]
          Length = 187

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 29/177 (16%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---------NRTFQVFL---- 48
           ++KN+   I  D+E TGLD   DRIIEI  +    +            ++T +       
Sbjct: 7   MQKNENNLIWIDLEMTGLDPVRDRIIEIATIVTDSHLNILAEGPVIAVHQTDEQLALMDE 66

Query: 49  -CPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
              N   NS    ++       + ++ +  +  +    +  +  +    ++   D  F+ 
Sbjct: 67  WNVNTHTNSGLVERV---RKSTVSEREAELATIAFLEKWVPQGASPICGNSVGQDRRFLF 123

Query: 108 AELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  +          + TL  +ARR  P        L        + ++ H AL D
Sbjct: 124 NYMPELESYFHYRYLDVSTLKELARRWKPEI------LA-----GFTKKNTHQALDD 169


>gi|313232986|emb|CBY19531.1| unnamed protein product [Oikopleura dioica]
          Length = 225

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 17/171 (9%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           + +   +  D E  G       ++    +           F    C    +       +H
Sbjct: 13  RERNNIVALDCEMVG-SVDKKSLLARATLLNGHGDVILDEF----CMPSEEIVEMRTPIH 67

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT E L++K S + + S+       +N + + H+   D+  +  +  R+ +D       
Sbjct: 68  GITIEQLEEKQSDAQLKSKIAKIL--KNKKLVGHSVDKDLAVLGIDH-RLVRDTAYKFSW 124

Query: 124 IDTLSIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIK 173
             +L             L +L   + G+ I  + +H +  D+     +Y K
Sbjct: 125 TSSLCP-------KSPSLKNLAMAKLGVEI-QKGEHDSYEDTLAALMIYAK 167


>gi|223888854|ref|ZP_03623445.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
 gi|223885670|gb|EEF56769.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
          Length = 908

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 34/145 (23%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + I  D ET+ LD+   ++I I             +F+ F    G     EA      
Sbjct: 339 KAKYISIDTETSSLDTYTAKLIGISI-----------SFKEF---EGYYIPIEA------ 378

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                K K       I  +F + F E N + I  N KFD   +         +P+ P   
Sbjct: 379 -----KGKIYIEKNYIIQKFNNLF-ESNPKIIGQNYKFDYKILKNN----GFNPIPP--Y 426

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
            DT+  A     +S+  L+ L ++Y
Sbjct: 427 FDTMIAAYLIDTNSKVSLDFLAEKY 451


>gi|225548643|ref|ZP_03769690.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
 gi|225370673|gb|EEH00109.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
          Length = 908

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 34/145 (23%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + I  D ET+ LD+   ++I I             +F+ F    G     EA      
Sbjct: 339 KAKYISIDTETSSLDTYTAKLIGISI-----------SFKEF---EGYYIPIEA------ 378

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                K K       I  +F + F   N + I  N KFD   +         +P+ P   
Sbjct: 379 -----KGKIYIEKNYIIQKFNNLFKS-NPKIIGQNYKFDYKILKNN----GFNPIPP--Y 426

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
            DT+  A     +S+  L+ L ++Y
Sbjct: 427 FDTMIAAYLIDTNSKVSLDFLAEKY 451


>gi|79324953|ref|NP_001031561.1| exonuclease family protein [Arabidopsis thaliana]
 gi|330255843|gb|AEC10937.1| exonuclease-like protein [Arabidopsis thaliana]
          Length = 242

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 9/108 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++++ +  D E  G  +    I +  +V L+D  +    F   + P          ++ G
Sbjct: 128 SRLKAMALDCEMVGGGADG-TIDQCASVCLVDDDENV-IFSTHVQPLLPVTDYRH-EITG 184

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF------NEQNAEWIAHNAKFDVGFI 106
           +T E LKD      +    + F              + H+ + D+  +
Sbjct: 185 LTKEDLKDGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCL 232


>gi|53805219|ref|YP_113058.1| oligoribonuclease [Methylococcus capsulatus str. Bath]
 gi|59798004|sp|Q60BD8|ORN_METCA RecName: Full=Oligoribonuclease
 gi|53758980|gb|AAU93271.1| oligoribonuclease [Methylococcus capsulatus str. Bath]
          Length = 181

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 62/180 (34%), Gaps = 35/180 (19%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL- 60
           + ++    I  D+E TGLD +ND IIEI  +                 P    + PE++ 
Sbjct: 1   MAQDAQNLIWIDLEMTGLDPQNDAIIEIATIVTDGQLNVLAE-----GPVLAIHQPESVL 55

Query: 61  --------KLH---GITDEFLK-----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
                   K H   G+T E ++     +  +         ++     +    ++   D  
Sbjct: 56  DRMDDWNRKQHGESGLT-ERVRRSTIGEAEAEHLTLGFVSEWVPPNESPICGNSICQDRR 114

Query: 105 FINAELQRINKDPLDPSRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   + R+       +  + TL I   R  P+ +  L             +S H AL D
Sbjct: 115 FLARCMPRLEAYFHYRNLDVSTLKILVERWAPALKEGLQK-----------QSTHRALDD 163


>gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
 gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
          Length = 971

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG D     ++ +      +        Q F  P                     
Sbjct: 403 LDTETTGTDPITAELVGMSFSYAEN--------QAFYVPVP------------------A 436

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D+     I +EF   F ++    +  N K+D+  +       N        + DT+    
Sbjct: 437 DRAEAQKIVNEFRPAFEKEGVLKVGQNIKYDMLVLG------NYGTEVRGPLFDTMVAHY 490

Query: 132 RKHPSSRNDLNSLCKRY 148
              P  R++++ L + Y
Sbjct: 491 VLQPELRHNMDYLAEIY 507


>gi|222423138|dbj|BAH19548.1| AT2G48100 [Arabidopsis thaliana]
          Length = 244

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 9/108 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++++ +  D E  G  +    I +  +V L+D  +    F   + P          ++ G
Sbjct: 128 SRLKAMALDCEMVGGGADG-TIDQCASVCLVDDDENV-IFSTHVQPLLPVTDYRH-EITG 184

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF------NEQNAEWIAHNAKFDVGFI 106
           +T E LKD      +    + F              + H+ + D+  +
Sbjct: 185 LTKEDLKDGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCL 232


>gi|216264622|ref|ZP_03436614.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
 gi|215981095|gb|EEC21902.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
          Length = 908

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 34/145 (23%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + I  D ET+ LD+   ++I I             +F+ F    G     EA      
Sbjct: 339 KAKYISIDTETSSLDTYTAKLIGISI-----------SFKEF---EGYYIPIEA------ 378

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                K K       I  +F + F E N + I  N KFD   +         +P+ P   
Sbjct: 379 -----KGKIYIEKNYIIQKFNNLF-ESNPKIIGQNYKFDYKILKNN----GFNPIPP--Y 426

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
            DT+  A     +S+  L+ L ++Y
Sbjct: 427 FDTMIAAYLIDTNSKVSLDFLAEKY 451


>gi|312149051|gb|ADQ29122.1| DNA polymerase I superfamily [Borrelia burgdorferi N40]
          Length = 908

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 34/145 (23%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + I  D ET+ LD+   ++I I             +F+ F    G     EA      
Sbjct: 339 KAKYISIDTETSSLDTYTAKLIGISI-----------SFKEF---EGYYIPIEA------ 378

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                K K       I  +F + F E N + I  N KFD   +         +P+ P   
Sbjct: 379 -----KGKIYIEKNYIIQKFNNLF-ESNPKIIGQNYKFDYKILKNN----GFNPIPP--Y 426

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
            DT+  A     +S+  L+ L ++Y
Sbjct: 427 FDTMIAAYLIDTNSKVSLDFLAEKY 451


>gi|225549672|ref|ZP_03770638.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
 gi|225369949|gb|EEG99396.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
          Length = 908

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 34/145 (23%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + I  D ET+ LD+   ++I I             +F+ F    G     EA      
Sbjct: 339 KAKYISIDTETSSLDTYTAKLIGISI-----------SFKEF---EGYYIPIEA------ 378

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                K K       I  +F + F E N + I  N KFD   +         +P+ P   
Sbjct: 379 -----KGKIYIEKNYIIQKFNNLF-ESNPKIIGQNYKFDYKILKNN----GFNPIPP--Y 426

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
            DT+  A     +S+  L+ L ++Y
Sbjct: 427 FDTMIAAYLIDTNSKVSLDFLAEKY 451


>gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
 gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
          Length = 971

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG D     ++ +      +        Q F  P                     
Sbjct: 403 LDTETTGTDPITAELVGMSFSYAEN--------QAFYVPVP------------------A 436

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D+     I +EF   F ++    +  N K+D+  +       N        + DT+    
Sbjct: 437 DRAEAQKIVNEFRPAFEKEGVLKVGQNIKYDMLVLG------NYGTEVRGPLFDTMVAHY 490

Query: 132 RKHPSSRNDLNSLCKRY 148
              P  R++++ L + Y
Sbjct: 491 VLQPELRHNMDYLAEIY 507


>gi|229138337|ref|ZP_04266931.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST26]
 gi|228645102|gb|EEL01340.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST26]
          Length = 813

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           +A+   P++    L  L K++   + H   H A  D+   ++++++ +
Sbjct: 1   MAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 46


>gi|221483300|gb|EEE21619.1| exonuclease domain-containing protein, putative [Toxoplasma gondii
           GT1]
          Length = 930

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 26/195 (13%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP-SFSSIFSEFWD 85
            E+G V ++D + T     VF+ P G        +  G+ +  L     S   +      
Sbjct: 97  TEVGRVSVIDSNGTA-LLDVFVRPKG-PIIDYLTRFSGLEERHLASAELSLEDVHRRLSQ 154

Query: 86  FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSL- 144
               + A  + H+ + D+  +           L   R IDT  +        +N L  L 
Sbjct: 155 ILPPE-AVLVGHSLENDLHALK----------LVHLRCIDTSILYPHAILGLKNSLKRLV 203

Query: 145 -CKRYGITISHRSKHGALLDSHLLSDV----------YIKMMVGGSQINFGFKTNEDRFF 193
            C      +     H +L D+    ++          +  +      +    +    R  
Sbjct: 204 NCFLPEQKLRRERGHDSLEDARATLNLAKLKVQRGPEFGVLSKQYEPLGRALRAVASRAL 263

Query: 194 KEEKKTVPNISLLKR 208
           + +++T  +IS  +R
Sbjct: 264 RCQQQTREDISPNER 278


>gi|237839513|ref|XP_002369054.1| exonuclease domain-containing protein [Toxoplasma gondii ME49]
 gi|211966718|gb|EEB01914.1| exonuclease domain-containing protein [Toxoplasma gondii ME49]
          Length = 930

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 26/195 (13%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP-SFSSIFSEFWD 85
            E+G V ++D + T     VF+ P G        +  G+ +  L     S   +      
Sbjct: 97  TEVGRVSVIDSNGTA-LLDVFVRPKG-PIIDYLTRFSGLEERHLASAELSLEDVHRRLSQ 154

Query: 86  FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSL- 144
               + A  + H+ + D+  +           L   R IDT  +        +N L  L 
Sbjct: 155 ILPPE-AVLVGHSLENDLHALK----------LVHLRCIDTSILYPHAILGLKNSLKRLV 203

Query: 145 -CKRYGITISHRSKHGALLDSHLLSDV----------YIKMMVGGSQINFGFKTNEDRFF 193
            C      +     H +L D+    ++          +  +      +    +    R  
Sbjct: 204 NCFLPEQKLRRERGHDSLEDARATLNLAKLKVQRGPEFGVLSKQYEPLGRALRAVASRAL 263

Query: 194 KEEKKTVPNISLLKR 208
           + +++T  +IS  +R
Sbjct: 264 RCQQQTREDISPNER 278


>gi|294649278|ref|ZP_06726713.1| exoribonuclease II [Acinetobacter haemolyticus ATCC 19194]
 gi|292824831|gb|EFF83599.1| exoribonuclease II [Acinetobacter haemolyticus ATCC 19194]
          Length = 186

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 35/181 (19%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNG 52
           M      R I  D+E TGLD+ ND+IIEI  +   D                 V L    
Sbjct: 1   MSSTPDTRLIWIDLEMTGLDTDNDKIIEIATIITDDNLNILAEGPVLAVHQSDVILN--- 57

Query: 53  RKNSPEALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
                   K HG       +    L  + +          + N +++    ++   D  F
Sbjct: 58  -AMDEWNTKQHGQSGLIERVRRSKLTAQDAEQQTLEFLKKWVNPKSSPMCGNSICQDRRF 116

Query: 106 INAELQRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           ++  +  +  +     R +D  S+   A+R  P   + L              + H A+ 
Sbjct: 117 LHRLMPEL--EQFFHYRNLDVSSVKELAKRWRPEIMSGLKK-----------NASHLAMD 163

Query: 163 D 163
           D
Sbjct: 164 D 164


>gi|254880993|ref|ZP_05253703.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
 gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
          Length = 971

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG D     ++ +      +        Q F  P                     
Sbjct: 403 LDTETTGTDPITAELVGMSFSYAEN--------QAFYVPVP------------------A 436

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D+     I +EF   F ++    +  N K+D+  +       N        + DT+    
Sbjct: 437 DRAEAQKIVNEFRPAFEKEGVLKVGQNIKYDMLVLG------NYGTEVRGPLFDTMVAHY 490

Query: 132 RKHPSSRNDLNSLCKRY 148
              P  R++++ L + Y
Sbjct: 491 VLQPELRHNMDYLAEIY 507


>gi|224532705|ref|ZP_03673322.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
 gi|224512323|gb|EEF82707.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
          Length = 908

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 34/145 (23%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + I  D ET+ LD+   ++I I             +F+ F    G     EA      
Sbjct: 339 KAKYISIDTETSSLDTYTAKLIGISI-----------SFKEF---EGYYIPIEA------ 378

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                K K       I  +F + F E N + I  N KFD   +         +P+ P   
Sbjct: 379 -----KGKIYIEKNYIIQKFNNLF-ESNPKIIGQNYKFDYKILKNN----GFNPIPP--Y 426

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
            DT+  A     +S+  L+ L ++Y
Sbjct: 427 FDTMIAAYLIDTNSKVSLDFLAEKY 451


>gi|109017390|ref|XP_001116736.1| PREDICTED: interferon-stimulated 20 kDa exonuclease-like 2-like
           isoform 2 [Macaca mulatta]
          Length = 354

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 62/194 (31%), Gaps = 19/194 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +K   + +  D E  G   K   +  +    +++Y+  +  +  ++ P          + 
Sbjct: 174 QKLPQKMVAIDCEMVGTGPKGH-VSSLARCSIVNYNG-DVLYDEYILPPCHIVDYR-TRW 230

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI  + + +   F     +            + H    D   +          P   +R
Sbjct: 231 SGIRKQHMVNATPFKIARGQILKIL--TGKIVVGHAIHNDFKALQYFH------PKSLTR 282

Query: 123 IIDTLSIARRKHPSSRN---DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMV 176
               +    RK     N    L  L K+     I +  +S H ++ D+    ++Y K++ 
Sbjct: 283 DTSHIPPLNRKADCPENATMSLKHLTKKLLNRDIQV-GKSGHSSVEDAQATMELY-KLVE 340

Query: 177 GGSQINFGFKTNED 190
              + +      +D
Sbjct: 341 VEWEEHLAQNPPKD 354


>gi|19387240|gb|AAL87152.1|AF480496_6 putative exonuclease [Oryza sativa Japonica Group]
 gi|41053175|dbj|BAD08117.1| exonuclease-like [Oryza sativa Japonica Group]
 gi|218191441|gb|EEC73868.1| hypothetical protein OsI_08643 [Oryza sativa Indica Group]
 gi|222623529|gb|EEE57661.1| hypothetical protein OsJ_08100 [Oryza sativa Japonica Group]
          Length = 336

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 64/210 (30%), Gaps = 36/210 (17%)

Query: 29  IGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF- 87
           I A   L     N  FQ ++ P     +    ++ GI  E+L+D      +     D   
Sbjct: 135 ICARVCLIGEDENVIFQTYVKPTTTVTNYR-YEMTGIRPEYLRDAMPLKLVQRRIQDILC 193

Query: 88  ------------NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHP 135
                       + +    + H        +  EL+R+  +      I DT         
Sbjct: 194 NGEPLWKIRPRSSGRARILVGHG-------LEHELERLGLEY-PAFMIRDTAKYPPLMKT 245

Query: 136 SS-RNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFF 193
           S   N L  L + Y G  I H        D      +YI+M       ++   + E    
Sbjct: 246 SKLSNSLKYLTQAYLGYDI-HTGIQDPYEDCVAAMRLYIRMRSQAHPRDYASGSGE---- 300

Query: 194 KEEKKTVPNISLLKRDKPLFTRITKEELDE 223
                   N     R + L  R++ EEL  
Sbjct: 301 ------TQNNYPAWRQREL-ERMSPEELLA 323


>gi|312148136|gb|ADQ30795.1| DNA polymerase I superfamily [Borrelia burgdorferi JD1]
          Length = 908

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 34/145 (23%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + I  D ET+ LD+   ++I I             +F+ F    G     EA      
Sbjct: 339 KAKYISIDTETSSLDTYTAKLIGISI-----------SFKEF---EGYYIPIEA------ 378

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                K K       I  +F + F E N + I  N KFD   +         +P+ P   
Sbjct: 379 -----KGKIYIEKNYIIQKFNNLF-ESNPKIIGQNYKFDYKILKNN----GFNPIPP--Y 426

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
            DT+  A     +S+  L+ L ++Y
Sbjct: 427 FDTMIAAYLIDTNSKVSLDFLAEKY 451


>gi|221218069|ref|ZP_03589535.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224533585|ref|ZP_03674174.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
 gi|221192017|gb|EEE18238.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224513258|gb|EEF83620.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
          Length = 908

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 34/145 (23%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + I  D ET+ LD+   ++I I             +F+ F    G     EA      
Sbjct: 339 KAKYISIDTETSSLDTYTAKLIGISI-----------SFKEF---EGYYIPIEA------ 378

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                K K       I  +F + F E N + I  N KFD   +         +P+ P   
Sbjct: 379 -----KGKIYIEKNYIIQKFNNLF-ESNPKIIGQNYKFDYKILKNN----GFNPIPP--Y 426

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
            DT+  A     +S+  L+ L ++Y
Sbjct: 427 FDTMIAAYLIDTNSKVSLDFLAEKY 451


>gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
 gi|6225284|sp|O51498|DPO1_BORBU RecName: Full=DNA polymerase I; Short=POL I
 gi|2688462|gb|AAC66909.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
          Length = 908

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 34/145 (23%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + I  D ET+ LD+   ++I I             +F+ F    G     EA      
Sbjct: 339 KAKYISIDTETSSLDTYTAKLIGISI-----------SFKEF---EGYYIPIEA------ 378

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                K K       I  +F + F E N + I  N KFD   +         +P+ P   
Sbjct: 379 -----KGKIYIEKNYIIQKFNNLF-ESNPKIIGQNYKFDYKILKNN----GFNPIPP--Y 426

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
            DT+  A     +S+  L+ L ++Y
Sbjct: 427 FDTMIAAYLIDTNSKVSLDFLAEKY 451


>gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1016

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 80/250 (32%), Gaps = 47/250 (18%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-----YSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + FD ETT LD+    ++        +      +K    +   +  NG  +         
Sbjct: 418 VAFDTETTSLDAMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVGDLLGGGL--- 474

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                 +++               ++    +A N K+D   +    +R   +        
Sbjct: 475 -----AENQIPMRDALPRLKALLEDEAVLKVAQNLKYDYLLL----KRYGIETRSFD--- 522

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRY-----------------GITIS----HRSKHGALL 162
           DT+ I+         + ++ L +++                  +T       R+ H A  
Sbjct: 523 DTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSGKANVTFDLVDIDRATHYAAE 582

Query: 163 DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL--LKRDKPLFTRITKEE 220
           D+ +   ++  +++       G  +  +R  +     +  +    +  D+ + +R++  E
Sbjct: 583 DAEVTLRLW--LVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSG-E 639

Query: 221 LDEHDKTIQT 230
           L +    ++ 
Sbjct: 640 LAQSAARLED 649


>gi|160872136|ref|ZP_02062268.1| oligoribonuclease Orn [Rickettsiella grylli]
 gi|159120935|gb|EDP46273.1| oligoribonuclease Orn [Rickettsiella grylli]
          Length = 181

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 56/170 (32%), Gaps = 31/170 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH-------- 63
            D+E TGLD+  D+IIEI  +      +          P       E++  H        
Sbjct: 11  IDLEMTGLDTNQDKIIEIATIITDSQLEIIEE-----GPVFAIFQSESILTHMDDWNKRQ 65

Query: 64  ----GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRINK 115
               G+ D     K +      +  +F  +    Q +    ++   D  F+   +  +  
Sbjct: 66  HKNSGLLDRVRLSKMTEEEAEKQTLEFIMKHVPPQKSPMCGNSICQDRRFLARCMPVLEN 125

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
                +  + TL      +  S N L +  K+        SKH AL D  
Sbjct: 126 YFHYRNLDVSTLKE--LAYRWSPNLLGAYKKK--------SKHLALEDVR 165


>gi|89900205|ref|YP_522676.1| oligoribonuclease [Rhodoferax ferrireducens T118]
 gi|89344942|gb|ABD69145.1| Exonuclease [Rhodoferax ferrireducens T118]
          Length = 169

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 23/161 (14%)

Query: 17  TGLDSKNDRIIEIGAV--------ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           TGLD + +RIIEI  +         +             L    + N     K  G+ D+
Sbjct: 2   TGLDPEIERIIEIAVIVTGPDLECRIEGPVLVIHQSDELLDKMDQWNKGTHGK-TGLIDK 60

Query: 69  ----FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                L +  + + I      +  ++ A    ++   D  F+   + ++       +  +
Sbjct: 61  VKASTLLEAQAEAQIIEFLSQYVPKKGAPMCGNSIGQDRRFLAKYMPKLEAFFHYRNLDV 120

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            TL    ++                 +   + +H AL D H
Sbjct: 121 STLKELSKRWRPDVYK----------SFKKKQRHTALADVH 151


>gi|308081452|ref|NP_001182971.1| hypothetical protein LOC100501283 [Zea mays]
 gi|238008542|gb|ACR35306.1| unknown [Zea mays]
          Length = 399

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 64/181 (35%), Gaps = 32/181 (17%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           + +  D E          I E G     V L+D   +       + P          +  
Sbjct: 240 KVLALDCEM--------CITEAGFELTRVTLIDIKGSV-VLDRLVKP-ANPIIDYNTRFS 289

Query: 64  GITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           GIT E L D   S   I  EF      +    + H+ + D+  +           +    
Sbjct: 290 GITAEMLADVSTSLHEIQEEFVGLVYTE-TILVGHSLENDLMALQ----------ISHGL 338

Query: 123 IIDTLSIARRKHPSSRND--LNSLCKRY-GITISHRSK-HGALLDSHLLSDV-YIKMMVG 177
           IIDT ++  + +  SR    L  L KR+ G  I +    H ++ D+    ++  +K+  G
Sbjct: 339 IIDT-AVLYKYNRGSRCKIALRVLTKRFLGREIQNTGSGHDSVEDARAALELAILKIRHG 397

Query: 178 G 178
           G
Sbjct: 398 G 398


>gi|237752927|ref|ZP_04583407.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
 gi|229375194|gb|EEO25285.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
          Length = 889

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 59/196 (30%), Gaps = 51/196 (26%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +      + FD ETT LD    +I+  G    LD           +       +   L
Sbjct: 316 MAQITPDSIVSFDTETTNLDVLCAKIV--GFSFSLDG----------INAYYAPIAHSYL 363

Query: 61  KLHGITDEFLKDKPSFSSIFSEF-WDFFNE--QNAEWIAHNAKFDVGFINAELQRINKDP 117
            +                I  E   +F N        I HN K+D+  ++      N  P
Sbjct: 364 GV-------------PEQISKELALEFINSLFNAKVVIGHNLKYDLEILHTNF---NFTP 407

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-------------------GITISHRSKH 158
                I D++ +A         +L+ L  RY                    + I +   +
Sbjct: 408 KSYHNIKDSMLLAWLYQSDMPCNLDDLMARYFKHTMIAFKDIIKKGENFSQLPIENAFTY 467

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+     ++ K+
Sbjct: 468 -ACEDAAACYQLFFKI 482


>gi|226321854|ref|ZP_03797380.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
 gi|226233043|gb|EEH31796.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
          Length = 908

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 34/145 (23%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + I  D ET+ LD+   ++I I             +F+ F    G     EA      
Sbjct: 339 KAKYISIDTETSSLDTYTAKLIGISI-----------SFKEF---EGYYIPIEA------ 378

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                K K       I  +F + F E N + I  N KFD   +         +P+ P   
Sbjct: 379 -----KGKIYIEKNYIIQKFNNLF-ESNPKIIGQNYKFDYKILKNN----GFNPIPP--Y 426

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
            DT+  A     +S+  L+ L ++Y
Sbjct: 427 FDTMIAAYLIDTNSKVSLDFLAEKY 451


>gi|195941682|ref|ZP_03087064.1| DNA polymerase I (polA) [Borrelia burgdorferi 80a]
          Length = 908

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 34/145 (23%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + I  D ET+ LD+   ++I I             +F+ F    G     EA      
Sbjct: 339 KAKYISIDTETSSLDTYTAKLIGISI-----------SFKEF---EGYYIPIEA------ 378

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                K K       I  +F + F E N + I  N KFD   +         +P+ P   
Sbjct: 379 -----KGKIYIEKNYIIQKFNNLF-ESNPKIIGQNYKFDYKILKNN----GFNPIPP--Y 426

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
            DT+  A     +S+  L+ L ++Y
Sbjct: 427 FDTMIAAYLIDTNSKVSLDFLAEKY 451


>gi|218249427|ref|YP_002375054.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
 gi|218164615|gb|ACK74676.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
          Length = 908

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 34/145 (23%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + I  D ET+ LD+   ++I I             +F+ F    G     EA      
Sbjct: 339 KAKYISIDTETSSLDTYTAKLIGISI-----------SFKEF---EGYYIPIEA------ 378

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                K K       I  +F + F E N + I  N KFD   +         +P+ P   
Sbjct: 379 -----KGKIYIEKNYIIQKFNNLF-ESNPKIIGQNYKFDYKILKNN----GFNPIPP--Y 426

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
            DT+  A     +S+  L+ L ++Y
Sbjct: 427 FDTMIAAYLIDTNSKVSLDFLAEKY 451


>gi|315604595|ref|ZP_07879658.1| oligoribonuclease [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313607|gb|EFU61661.1| oligoribonuclease [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 213

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 55/170 (32%), Gaps = 21/170 (12%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNG---RKNSPEALK 61
           K   I  D E TGLD  ND +IE+  V    D S  +    V + P        +     
Sbjct: 8   KDPLIWIDCEMTGLDVANDALIEVAVVVTDGDLSIVDPGMDVLITPPACALENMNDFVRN 67

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRI 113
           +H   G+  E  +   S      +   +          A    ++   D  F+ A     
Sbjct: 68  MHTSSGLLTELARSGVSMEEATEQVLSYIKRFVPQPGKALLAGNSVGTDKMFLEA----- 122

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           N   +        + ++  K  + R   ++  +     + H   H AL D
Sbjct: 123 NMPSVIEHLHYRLVDVSSIKELAKRWYRSAFAEA---PVKHGG-HRALAD 168


>gi|221213533|ref|ZP_03586507.1| oligoribonuclease [Burkholderia multivorans CGD1]
 gi|221166322|gb|EED98794.1| oligoribonuclease [Burkholderia multivorans CGD1]
          Length = 211

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 49/185 (26%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +N++  +  D+E TGLD  NDRIIEI  V       TN T +  +   G         +H
Sbjct: 15  RNELNLVWLDMEMTGLDPDNDRIIEIAVV------VTNSTLE--IAVEGPV-----FAIH 61

Query: 64  GITDEFLKDKPSFSS-------IFSEFWD------------------FFNEQNAEWIAHN 98
             +DE L     ++        +                        +     +    ++
Sbjct: 62  Q-SDETLAKMDDWNKSTHGRSGLIDRVRASTVTEAEAAAQLQAFLAQYVPPGKSPMCGNS 120

Query: 99  AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
              D  F+   +  + +     +  + TL    R+   +                 R+ H
Sbjct: 121 ICQDRRFMARWMPGLERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMH 170

Query: 159 GALLD 163
            AL D
Sbjct: 171 TALAD 175


>gi|192360800|ref|YP_001983571.1| oligoribonuclease [Cellvibrio japonicus Ueda107]
 gi|190686965|gb|ACE84643.1| oligoribonuclease [Cellvibrio japonicus Ueda107]
          Length = 185

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 58/176 (32%), Gaps = 33/176 (18%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH- 63
           N+   I  D+E TGLD   D IIEI  +    +            P    + P+++ L+ 
Sbjct: 7   NENNLIWIDLEMTGLDPDKDVIIEIATIVTDAHLNILAE-----GPVFAIHQPDSIMLNM 61

Query: 64  -----------GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINA 108
                      G+T      + S     +    F  +      +    ++   D  F+  
Sbjct: 62  DEWNTNQHGKSGLTQRVRDSQVSIEQAEAATIAFLEQWVPKGKSPICGNSICQDRRFLVR 121

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            + R+       +  + T+  +ARR  P             G+  S    H AL D
Sbjct: 122 GMPRLENYFHYRNLDVSTVKELARRWRPDV---------MAGVKKSG--AHLALDD 166


>gi|222617590|gb|EEE53722.1| hypothetical protein OsJ_00063 [Oryza sativa Japonica Group]
          Length = 328

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 60/216 (27%), Gaps = 27/216 (12%)

Query: 21  SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80
           + +D  +++ A   +   +       F+ P+    +       GI  E L+D  +     
Sbjct: 108 AGSDGSLDVCARVCVVDEQERVVLDTFVKPHI-PVTHYRYDTTGIRPEHLRDAMTPKQAA 166

Query: 81  SEFWDFF------------NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               +                +    + H    D+  +  +     K        +   S
Sbjct: 167 RRVQELLLNGEPAWKARSSRGRARILVGHGLDHDLESLGMDYPEYLKRDTARYPALMKTS 226

Query: 129 IARRKHPSSRNDLNSLCKR---YGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +R       N L  L      Y I I+ R  H    D      +Y +M  G        
Sbjct: 227 NSRL-----SNSLKYLTLAYLGYHIQIAGRHHHP-YDDCVAALRLYRRM-RGARP---HT 276

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
             +          T        R + L  R++ EEL
Sbjct: 277 CRDAGVGPHAPPPTPAEAFPAWRQREL-ERMSPEEL 311


>gi|50086122|ref|YP_047632.1| oligoribonuclease [Acinetobacter sp. ADP1]
 gi|59798028|sp|Q6F805|ORN_ACIAD RecName: Full=Oligoribonuclease
 gi|49532098|emb|CAG69810.1| oligoribonuclease [Acinetobacter sp. ADP1]
          Length = 183

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 23/175 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRK---NS 56
           M      R I  D+E TGLD+ ND+IIEI  +   D+        V  +    R      
Sbjct: 1   MSSTQDTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNIVAEGPVLAVHQPDRILNAMD 60

Query: 57  PEALKLH---GITDEFLKDKPSFSSI----FSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
               + H   G+ +   + K +   +          + N + +    ++   D  F++  
Sbjct: 61  EWNTRQHGQSGLIERVRRSKLTARDVELQTLEFLKKWVNPKTSPMCGNSICQDRRFMHRL 120

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + +     +  + ++  +A+R  P   + L              + H A+ D
Sbjct: 121 MPELEQYFHYRNLDVSSVKELAKRWRPEIMSGLKK-----------NASHLAMDD 164


>gi|38234384|ref|NP_940151.1| oligoribonuclease [Corynebacterium diphtheriae NCTC 13129]
 gi|48428192|sp|P61650|ORN_CORDI RecName: Full=Oligoribonuclease
 gi|38200647|emb|CAE50343.1| oligoribonuclease [Corynebacterium diphtheriae]
          Length = 210

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 23/169 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLC--PNG-RKNSPEALKLH 63
           R +  D+E TGL+     I+E+ A +   D +       + +   P    +       +H
Sbjct: 11  RLVWIDLEMTGLELDRHVIVEVAALITDADLNIIGEGVDLVVHATPEQLAEMDDFVTTMH 70

Query: 64  ---GITDE----FLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINK 115
              G+ +E     +  + +  ++ +      + E  A    ++   D  FI A++ R++K
Sbjct: 71  TSSGLLEEIKASTVSLQEAEDAVLALIAQHCDPEHPAPLAGNSIATDRSFIRAQMPRLDK 130

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + +L  ++RR  P          + Y         H AL D
Sbjct: 131 ALHYRMVDVSSLKELSRRWAP----------RVYFNQPDKGMAHRALAD 169


>gi|326423655|ref|NP_759085.2| ATP-dependent 26S proteasome regulatory subunit [Vibrio vulnificus
           CMCP6]
 gi|319999007|gb|AAO08612.2| ATP-dependent 26S proteasome regulatory subunit [Vibrio vulnificus
           CMCP6]
          Length = 187

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 59/178 (33%), Gaps = 31/178 (17%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHG- 64
           M+ ++ D+ET G +S N  I+ IGA        +    F        R  S E+ +  G 
Sbjct: 1   MKNLMIDLETMG-NSSNAAIVAIGACFFEPSTGEIGEKFS-------RIISLESSQECGC 52

Query: 65  ITDEFL----------------KDKPSFSSIFSEFWDFF--NEQNAEWIAHNAKFDVGFI 106
           I    +                 +  + +    EF +F     +      + + FD   +
Sbjct: 53  IDASTVLWWMKQSSDARAVLNSSEAQNINISLHEFREFVNSGSRQPLVWGNGSSFDCVIL 112

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
              + +   +   P +  +     R      +N L    KR  +      +H AL D+
Sbjct: 113 KNTIIQCLGEQFVPWQFWNE-RDVRTMVDLGKNLLGFDPKR-DMPFEG-VRHDALSDA 167


>gi|221118950|ref|XP_002158045.1| PREDICTED: similar to Interferon-stimulated 20 kDa exonuclease-like
           1 [Hydra magnipapillata]
          Length = 207

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 58/171 (33%), Gaps = 18/171 (10%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           N    +  D E  G+ +  D +     V+          +  ++ P          K  G
Sbjct: 22  NPSEVVSLDCEMVGISNNQDALGRCSIVDYFGNVL----YDKYIKPESTITDYR-TKWSG 76

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I    +    SF     E ++    +N   + H+  FD   +     ++N++     R I
Sbjct: 77  IKPHHMHQAISFKKARGEIYNII--KNKVIVGHSLHFDFKVL-----KLNRNNFKI-RDI 128

Query: 125 DTLSIARRKHPSSRN---DLNSLCKR-YGITISHRSKHGALLDSHLLSDVY 171
            T ++ R+      N    L  L +   G  I     H ++ DS    D+Y
Sbjct: 129 STSTLLRQLANFPSNQIVSLKRLAQVILGRDI-QSGSHCSIEDSIATMDLY 178


>gi|171684725|ref|XP_001907304.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942323|emb|CAP67975.1| unnamed protein product [Podospora anserina S mat+]
          Length = 718

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 32/203 (15%)

Query: 8   RKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++   D E          +  +  V     +  +      + P  +  +    +  GIT
Sbjct: 323 REVLAIDCEMCLTGPGELALTRVSLVSWDGETVLDE----LVKPE-KPITDYVTQYSGIT 377

Query: 67  DEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            E L   P   + S I ++  D  + +    + H+   D+  +             P  +
Sbjct: 378 KEMLD--PVTTTLSDIQAKLLDLLHPR-TILLGHSLDSDLKALQ---------LAHPFIV 425

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY--------GITISHRSKHGALLDSHLLSDVYIKMM 175
             ++     + P  +N L  L +R+        G TI+    H ++ D+    D+  K  
Sbjct: 426 DTSMLFPHARGPPLKNSLKYLAQRHLSREVQKGGGTING---HDSVEDAKTCLDLVKKKC 482

Query: 176 VGGSQINFGFKTNEDRFFKEEKK 198
             G     G    E+ F +  + 
Sbjct: 483 EKGKAWATGDSQGENLFRRLARS 505


>gi|327198232|ref|YP_004306808.1| putative DNA polymerase [Pseudomonas phage KPP10]
 gi|297591758|dbj|BAJ09178.1| putative DNA polymerase [Pseudomonas phage KPP10]
          Length = 305

 Score = 47.5 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 82  EFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND 140
           +      ++    +AHN + FD+  INA L + +  P  P +IIDT  IA++      N 
Sbjct: 119 KVLAGLLDEADFVVAHNGRKFDLPTINAHLVKHDILPPSPYKIIDTCDIAKKVFKFPSNS 178

Query: 141 LNSLCKRYG 149
           L SL     
Sbjct: 179 LKSLAIFLK 187


>gi|125524093|gb|EAY72207.1| hypothetical protein OsI_00058 [Oryza sativa Indica Group]
          Length = 330

 Score = 47.5 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 60/216 (27%), Gaps = 27/216 (12%)

Query: 21  SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80
           + +D  +++ A   +   +       F+ P+    +       GI  E L+D  +     
Sbjct: 108 AGSDGSLDVCARVCVVDEQERVVLDTFVKPHI-PVTHYRYDTTGIRPEHLRDAMTPKQAA 166

Query: 81  SEFWDFF------------NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               +                +    + H    D+  +  +     K        +   S
Sbjct: 167 RRVQELLLNGEAAWKARSSRGRARILVGHGLDHDLESLGMDYPEYLKRDTARYPALMKTS 226

Query: 129 IARRKHPSSRNDLNSLCKR---YGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            +R       N L  L      Y I ++ R  H    D      +Y +M  G        
Sbjct: 227 NSRL-----SNSLKYLTLAYLGYHIQLAGRHHHP-YDDCVAALRLYRRM-RGARP---HT 276

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
             +          T        R + L  R++ EEL
Sbjct: 277 CRDAGVGPHAPPPTPAEAFPAWRQREL-ERMSPEEL 311


>gi|124267397|ref|YP_001021401.1| hypothetical protein Mpe_A2210 [Methylibium petroleiphilum PM1]
 gi|124260172|gb|ABM95166.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 175

 Score = 47.5 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 21/169 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGITDE 68
           + DIE +G   +    IE+G V         R +   + P        P+A  LH I  E
Sbjct: 15  ILDIEASGF-GRGSYPIEVGFVLPD-----GRAWCSLIRPEPDWLHWDPQAQALHHIPRE 68

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQN--AEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
              +   S + +        N +    +  AH    D  ++          P      + 
Sbjct: 69  LAQRHGRSAAEVAGLLNQRLNGRVAYCDGWAH----DYPWLARLYDAAELTPSFRLEHLL 124

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +L              ++L KR  I  S + +H A  D+ +L     ++
Sbjct: 125 SL-----LDEDQARRFDAL-KRQVIAESGQQRHRASTDARMLQLALRRL 167


>gi|169846317|ref|XP_001829874.1| MipD protein [Coprinopsis cinerea okayama7#130]
 gi|12249113|dbj|BAB20421.1| MipD [Coprinopsis cinerea]
 gi|116509063|gb|EAU91958.1| MipD protein [Coprinopsis cinerea okayama7#130]
          Length = 374

 Score = 47.5 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 56/166 (33%), Gaps = 15/166 (9%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + +  D E  G+    +    +  V L++ Y +       F+    R       +  GI 
Sbjct: 103 KYLALDCEMVGVGIDGEE-SSLARVSLVNFYGEVI--MDEFVRQRERVVDYR-TQWSGIR 158

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           +  +     F  +  +  D   ++    + H    D+  +      +   P   +R    
Sbjct: 159 ESDMVHAKLFLEVQKQVADLLKDR--ILVGHAVHNDLKAL------LLSHPYPYTRDTQV 210

Query: 127 LSIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVY 171
           L+       S R  L +L K   G+TI     H ++ D+     VY
Sbjct: 211 LAYKSGLTKSKRIALRNLVKEQIGLTIQAGE-HSSVTDARATMAVY 255


>gi|332220764|ref|XP_003259525.1| PREDICTED: interferon-stimulated 20 kDa exonuclease-like 2-like
           [Nomascus leucogenys]
          Length = 354

 Score = 47.5 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 60/188 (31%), Gaps = 19/188 (10%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +K   + +  D E  G   K   +  +    +++Y+  +  +  ++ P          + 
Sbjct: 174 QKLPQKMVAIDCEMVGTGPKGH-VSSLARCSIVNYNG-DVLYDEYILPPCHIVDYR-TRW 230

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI  + + +   F     +            + H    D   +          P   +R
Sbjct: 231 SGIRKQHMVNATPFKIARGQILKILA--GKIVVGHAIHNDFKALQYFH------PKSLTR 282

Query: 123 IIDTLSIARRKHPSSRN---DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMV 176
               +    RK     N    L  L K+     I +  +S H ++ D+    ++Y K++ 
Sbjct: 283 DTSHIPPLNRKADCPENATMSLKHLTKKLLNRDIQV-GKSGHSSVEDAQATMELY-KLVE 340

Query: 177 GGSQINFG 184
              + +  
Sbjct: 341 VEWEEHLA 348


>gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy]
 gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy]
          Length = 948

 Score = 47.5 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 55/180 (30%), Gaps = 49/180 (27%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ETTGLD    ++I           +  +++ V           E  +L        
Sbjct: 382 AFDLETTGLDEMLAQVIGFSFCW-----EEGKSYYV-------PLVHETKEL-------- 421

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                   + S   ++        +  N K+D   +           +  +   DT+  A
Sbjct: 422 ---VDREQVRSLLEEYLGSGRLSLVGQNIKYDYKVLRQW------GIMPKNIYFDTMVAA 472

Query: 131 RRKHPSSRNDLNSLCKRY-------------------GITISHRSKHGALLDSHLLSDVY 171
                +S  +++ L ++Y                    I +     +GA  D+ +   +Y
Sbjct: 473 WLLDSTSVFNMDYLAEKYLDYKTVHYTDIVPKDKLLSDIPLEQAVFYGA-EDADVTFRLY 531


>gi|15895183|ref|NP_348532.1| ribonuclease D [Clostridium acetobutylicum ATCC 824]
 gi|15024889|gb|AAK79872.1|AE007698_6 Ribonuclease D [Clostridium acetobutylicum ATCC 824]
 gi|325509325|gb|ADZ20961.1| Ribonuclease D [Clostridium acetobutylicum EA 2018]
          Length = 205

 Score = 47.5 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 53/156 (33%), Gaps = 44/156 (28%)

Query: 4   KNKMRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            N  + I  D ETTGLD   D   +I+I A E +            +  N          
Sbjct: 20  LNNCKYIAIDTETTGLDPLKDKLCLIQICAKEKI----------FLIKYNNSNQK----N 65

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L GI           S I   F             H+A FD+ F+   L+  N      +
Sbjct: 66  LIGILQ--------CSKIIKIF-------------HHANFDLRFLMKNLKIYNI-----N 99

Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRY-GITISHR 155
            ++ T   A+  +     N L  L ++Y  I I  +
Sbjct: 100 NVVCTKIAAKLLNGIEIENSLKKLLRKYLNINIDKK 135


>gi|291613511|ref|YP_003523668.1| Exonuclease RNase T and DNA polymerase III [Sideroxydans
           lithotrophicus ES-1]
 gi|291583623|gb|ADE11281.1| Exonuclease RNase T and DNA polymerase III [Sideroxydans
           lithotrophicus ES-1]
          Length = 181

 Score = 47.5 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 61/176 (34%), Gaps = 27/176 (15%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP------NGRKN 55
           + +N+   +  D+E TGL    DRIIE+  V       T     V +        +G  N
Sbjct: 1   MAQNQNNLVWIDMEMTGLLPDTDRIIEVALVVTDSELNTVAEAPVLVVHQSDSVLDGMDN 60

Query: 56  SPEALKLHG----ITD---EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
             ++   HG    I       L D    + + +   +    + +    ++   D  F+  
Sbjct: 61  WNKST--HGKSGLIDKVKASTLDDAMVEAQMLAFLQEHVPTRTSPMCGNSICQDRRFLAR 118

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            + ++       +  + TL  +A+R  P   N            I    KH AL D
Sbjct: 119 WMPKLEDYFHYRNLDVSTLKELAKRWKPEVANG-----------IKKHGKHEALAD 163


>gi|255930705|ref|XP_002556909.1| Pc12g00030 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211581528|emb|CAP79630.1| Pc12g00030 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 680

 Score = 47.5 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 22/197 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D E    +     +  I  V      +        + P  R       +  GIT E L
Sbjct: 293 ALDCEMCITEGGQSELTRISMVGW--GGEVV--LDELVKP-ARPVINYLTRYSGITPEML 347

Query: 71  KDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           +  P   +   I          + A  + H+   D+  +           + P  +  ++
Sbjct: 348 E--PVTTTLHDIQQRLLTLLTPR-AILVGHSLNSDLTAL---------KLVHPFIVDTSI 395

Query: 128 SIARRKHPSSRNDLNSLCKRY--GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                + P  +  L  L ++Y      S  + H ++ D+  + ++       G +     
Sbjct: 396 IYPHPRGPPLKCSLKWLTQKYQNKQIQSGMAGHDSIEDARAVLELVKLKCEKGERWGTSD 455

Query: 186 KTNEDRFFKEEKKTVPN 202
            +NE  F +  + T P+
Sbjct: 456 VSNESIFRRLARSTRPS 472


>gi|326795802|ref|YP_004313622.1| oligoribonuclease [Marinomonas mediterranea MMB-1]
 gi|326546566|gb|ADZ91786.1| Oligoribonuclease [Marinomonas mediterranea MMB-1]
          Length = 182

 Score = 47.5 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 51/173 (29%), Gaps = 21/173 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR----KNSP 57
           +  ++   +  D+E TGLD + + IIEI  +    +          +    +        
Sbjct: 1   MSYSEENLVWIDLEMTGLDPEMNTIIEIATIVTDKHLNVLAQGPNLVVHQDKGVMDAMDE 60

Query: 58  EALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAEL 110
                H   G+T   L    +      E   F         +    ++   D  F+   +
Sbjct: 61  WCTTHHGQSGLTQRVLDSAITMEQAEQETIAFLEKYLPAGKSPICGNSVGQDRRFLYKYM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R+  +     R ID  ++           L+          +    H AL D
Sbjct: 121 PRL--EAFFHYRYIDVSTLKELGRRWKPEALD--------GFTKTGAHLALDD 163


>gi|222099813|ref|YP_002534381.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
 gi|221572203|gb|ACM23015.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
          Length = 893

 Score = 47.5 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 37/149 (24%)

Query: 6   KMRKI---VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           K++++     D+ET+ LD  N  I+ I             +F     P      P    L
Sbjct: 313 KLKEVPSFALDLETSSLDPFNCEIVGISV-----------SF----KPKTAYYIP----L 353

Query: 63  HGITDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           H       ++  +     + S+  +   + +++ +  N K+D   +  +       P+ P
Sbjct: 354 HH------RNAQNLDETLVLSKLKEILEDPSSKIVGQNLKYDYKVLMVK----GISPVYP 403

Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRY 148
               DT+  A    P   + +L  L  ++
Sbjct: 404 --HFDTMIAAYLLEPNEKKFNLEDLSLKF 430


>gi|119946941|ref|YP_944621.1| oligoribonuclease [Psychromonas ingrahamii 37]
 gi|119865545|gb|ABM05022.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas
           ingrahamii 37]
          Length = 179

 Score = 47.5 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 11/135 (8%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62
            NK   +  D+E TGL+   D+IIEI  +    D +   +  +  +  + +         
Sbjct: 1   MNKNNLVWIDLEMTGLNPDTDKIIEIATIVTDSDLNILAQGPEFVIHQSNQALDAMDEWC 60

Query: 63  H------GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQR 112
                  G+TD     + S ++      DF  E      A    ++   D  F+  ++  
Sbjct: 61  TTQHGKSGLTDRVKASQISCANAEQATLDFLKEWVPAGAAPLCGNSIGQDRRFLVRQMPA 120

Query: 113 INKDPLDPSRIIDTL 127
           +       +  + T+
Sbjct: 121 LEAYFHYRNIDVSTI 135


>gi|229815699|ref|ZP_04446024.1| hypothetical protein COLINT_02747 [Collinsella intestinalis DSM
           13280]
 gi|229808615|gb|EEP44392.1| hypothetical protein COLINT_02747 [Collinsella intestinalis DSM
           13280]
          Length = 321

 Score = 47.5 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 59/170 (34%), Gaps = 15/170 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL---DYSKTN-RTFQVFLCPNGRKNSPEALKLHGITD 67
            DIETTG   +   II +G   +    D    + + F   +    R+       +H I  
Sbjct: 135 IDIETTGRAPERGYIINVGWEIMELTSDAVPHDPQAFYCGIPDMYRETGVPLADIHHIQW 194

Query: 68  EFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFIN------AELQRINKDPLDP 120
             L  K  F        +     +    +AHNA F+  +        AE +R  K  +  
Sbjct: 195 SDLDGKTPFREDVKLQKELLKLMKRYPIMAHNAAFEDSWFMLHLPGYAEARRAGKIIVID 254

Query: 121 SRIID-TLSIARRKHPSS--RNDLNSLCKRYG-ITISHRSKHGALLDSHL 166
           SR I  ++    R  P       L +  +R G +       H  L D+ L
Sbjct: 255 SRHICRSVDGEVRTLPRESAPASLQNWARRRGTLAADENELHLGLDDTDL 304


>gi|255020848|ref|ZP_05292904.1| Oligoribonuclease [Acidithiobacillus caldus ATCC 51756]
 gi|254969639|gb|EET27145.1| Oligoribonuclease [Acidithiobacillus caldus ATCC 51756]
          Length = 200

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 38/176 (21%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL------ 60
            R +  D+E TGL+ + D+I+EI ++   +  +          P    +  EA+      
Sbjct: 6   QRLVWIDLEMTGLNPERDQILEIASIVTDNELRVLSE-----GPVLAVHQSEAVLAAMDD 60

Query: 61  ---KLH---GITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAEL 110
              + H   G+     + +    ++ ++  DF         A    ++   D  F+   +
Sbjct: 61  WNQRTHGNSGLVQRVRESRLDLGAVEAQTLDFLQAHVQPGTAPLCGNSVCQDRRFLARLM 120

Query: 111 QRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R+ +      R+ID  +I   A R +PS                    +H AL D
Sbjct: 121 PRLER--FLHYRLIDVSTIKELAYRWYPSLPR------------YPKTERHEALAD 162


>gi|239791728|dbj|BAH72293.1| ACYPI009144 [Acyrthosiphon pisum]
          Length = 243

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 54/173 (31%), Gaps = 17/173 (9%)

Query: 3   RKNKMRKIVFDIETTGLDS--KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K  +  +  D E  G+    + + +  +  V     +     +  F+ P          
Sbjct: 53  EKKDIEVVAIDCEMVGIHPDGQGNMLARVSIVNSKGETI----YDKFVKPTATVTDYR-T 107

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            + GI  + ++    F  +  E      ++    + H  + D+  +          P   
Sbjct: 108 PVSGIRPKDIEHGEVFVKVKKEVTQILKDK--LLVGHALEHDLRVLRISH------PKHM 159

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYI 172
            R   T    ++        L  L   + G +I    +H ++ D+     +Y+
Sbjct: 160 IRDTSTYWQFKQLTEGRTPGLKRLTLHFLGASI-QEGEHSSVQDAKAALQLYM 211


>gi|307205735|gb|EFN83972.1| Three prime repair exonuclease 2 [Harpegnathos saltator]
          Length = 136

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 16/131 (12%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKN--DRIIEIGAV----ELLDYSKTN---RTFQVFLCP 50
           M  + K+R  + FD+ETTG+       +I E+  V    E + +++ N   R     + P
Sbjct: 1   MEMEVKIRSFVFFDLETTGIFEGTVAPKITEMALVAVARESIRHNEQNSLPRILHKLILP 60

Query: 51  --NGRKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHN-AKFDVG 104
               +        +  +  D+    KP    I+     F N       ++AHN  KFD  
Sbjct: 61  INPQKTIPTRIQYMTKLYNDDMELLKPFEFEIYELIVAFLNRLRPPICFVAHNGDKFDFP 120

Query: 105 FINAELQRINK 115
            + +EL+ INK
Sbjct: 121 VLLSELKCINK 131


>gi|298248310|ref|ZP_06972115.1| Exonuclease [Ktedonobacter racemifer DSM 44963]
 gi|297550969|gb|EFH84835.1| Exonuclease [Ktedonobacter racemifer DSM 44963]
          Length = 253

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 11/170 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            VF + T GL        EI AV L+++  T    +  +       S    +  G++   
Sbjct: 94  AVFHLTTAGLTDDA----EIIAVTLVNH--TGMPIEHLVIRPTEPISFARCEAFGLSVAQ 147

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L   P  + ++ +     +++    +     + V  + A  +R+   PL   ++ D  + 
Sbjct: 148 LASAPLLTEVWGQLIQACHDR--FLLTFQRDYVVARLEAAAKRLQLPPLSI-QMDDLRAH 204

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            R         L+ LC R G+T+        L  +     V   M   G 
Sbjct: 205 TRAYFGELGLRLSDLCARCGVTLPSTP--DPLQCAQAFYGVLCAMARAGE 252


>gi|238897699|ref|YP_002923378.1| oligoribonuclease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465456|gb|ACQ67230.1| oligoribonuclease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 185

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 38/184 (20%)

Query: 1   MIRK---NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPN 51
           M++K   +    I  D+E TGLD + D IIEI  +               + +Q      
Sbjct: 1   MVKKSINHHQNLIWIDLEMTGLDPERDSIIEIATLVTDADLNILAEGPVIQIYQS--DQQ 58

Query: 52  GRKNSPEALKLH---GITDEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
               +   + +H   G+  E +K+       + S+       +  E  +    ++   D 
Sbjct: 59  IALMNDWNICVHTKTGLI-ERVKNSLFSTADAESATLEFLRKWVPEGQSPICGNSVAQDR 117

Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHG 159
            F+   + ++  +     R +D             + L  L  R+   I      ++ H 
Sbjct: 118 RFLYRYMPKL--EAYFHYRYLDV------------STLKELAARWKPEILPGFKKKNTHQ 163

Query: 160 ALLD 163
           AL D
Sbjct: 164 ALED 167


>gi|330979930|gb|EGH78228.1| exonuclease [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 95

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL 60
            + R +V D+ET+GL+   D+++ IGAV + D +    + F+  L     K SP  L
Sbjct: 38 LREQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVL 95


>gi|226320515|ref|ZP_03796080.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
 gi|226234079|gb|EEH32795.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
          Length = 908

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 34/145 (23%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + I  D ET+ LD+   ++I I             +F+ F    G     EA      
Sbjct: 339 KAKYISIDTETSSLDTYTAKLIGISI-----------SFKEF---EGCYIPIEA------ 378

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                K K       I  +F + F E N + I  N KFD   +         +P+ P   
Sbjct: 379 -----KGKIYIEKNYIIQKFNNLF-ESNPKIIGQNYKFDYKILKNN----GFNPIPP--Y 426

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
            DT+  A     +S+  L+ L ++Y
Sbjct: 427 FDTMIAAYLIDTNSKVSLDFLAEKY 451


>gi|17557646|ref|NP_504838.1| hypothetical protein C05C8.5 [Caenorhabditis elegans]
 gi|2291256|gb|AAB65372.1| Hypothetical protein C05C8.5 [Caenorhabditis elegans]
          Length = 594

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 19/183 (10%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E    D  N  +  I  V+  + +  +      + P GR  +    +  GIT + ++
Sbjct: 224 VDCEMCETDVANRELTRISIVDEFENTILD----TLVKPEGR-ITDYVTRWSGITPDMME 278

Query: 72  DKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              +    +           +A  + H+ + D+  +                 +  +   
Sbjct: 279 GVTTTLGDVQKAIQSLL-PPDAILVGHSLEHDLQAMKMTH--------PFCLDVGHVLNY 329

Query: 131 RRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHL---LSDVYIKMMVGGSQINFGFK 186
              +   RN L +L + + G  I     H +  D+     L+ + ++  +    ++FG+K
Sbjct: 330 TNSNTEFRNSLKNLTELFLGAQIQSEFGHCSYEDAWAAMRLAQLKLEKGLMFGNVSFGWK 389

Query: 187 TNE 189
            +E
Sbjct: 390 YSE 392


>gi|330960097|gb|EGH60357.1| oligoribonuclease [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 178

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 58/180 (32%), Gaps = 39/180 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNG----- 52
            +NK   I  D+E TGLD   D IIE+  +       T+           +  +      
Sbjct: 1   MQNKQNLIWIDLEMTGLDPDTDVIIEMATI------ITDSELSTLAEGPVIAVHQSDETL 54

Query: 53  RKNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGF 105
            K      + H   G+T    +   S +   ++  +F      E+++    ++   D  F
Sbjct: 55  AKMDEWNTRQHGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGALLD 163
           +   +  +       +  + T              L  L  R+   +     S H AL D
Sbjct: 115 LYRHMPTLENYFHYRNLDVST--------------LKELAARWSPELKFKKGSTHLALDD 160


>gi|326538465|gb|ADZ86680.1| exonuclease [Brucella melitensis M5-90]
          Length = 148

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 9/131 (6%)

Query: 55  NSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
            +P    L GIT+E + +D     +  ++   F     A + +     ++  I       
Sbjct: 13  IAPYFTDLTGITEEQISRDGKPLKTALNDLDSF--SDGATFWSWGKD-ELNMIAISCYVE 69

Query: 114 NKDPLDPSRIID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
              P  P+   D      L+        +R   N L   YG+       H AL D+  + 
Sbjct: 70  GIAPPIPAPRFDNAVKLLLAAGMPVEDLARTPSNKLADYYGLEHPELQGHDALDDARSIG 129

Query: 169 DVYIKMMVGGS 179
                ++  G 
Sbjct: 130 YTLQYLLSSGK 140


>gi|330796639|ref|XP_003286373.1| hypothetical protein DICPUDRAFT_54227 [Dictyostelium purpureum]
 gi|325083645|gb|EGC37092.1| hypothetical protein DICPUDRAFT_54227 [Dictyostelium purpureum]
          Length = 620

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 66/194 (34%), Gaps = 26/194 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E          +  I  V        +     F+ P  R+      +  GIT E 
Sbjct: 267 LAIDCEMCRTQGGELELTRISIVNEKRKVVLDE----FVLPE-REIIDYLTQYSGITKET 321

Query: 70  LKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L+        I  + ++     N   + H+ + D+  +    ++I          IDT  
Sbjct: 322 LEKVTNRLPDIHKKLYEIIGP-NTVLVGHSLENDLKAMKFIHRKI----------IDTAV 370

Query: 129 IARRKHPSSRND---LNSLCKRY--GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
                 P+  +    L  L K+Y   I  + +S H ++ D+  + ++    +  G     
Sbjct: 371 ----LFPTGSSGKFPLKYLTKKYLNRIIQNKQSGHDSIEDAKAVMELVQLKIQRGKTFGT 426

Query: 184 GFKTNEDRFFKEEK 197
             +++E  F K  K
Sbjct: 427 KLESSESFFDKIHK 440


>gi|320583877|gb|EFW98090.1| 3'-5' RNA exonuclease [Pichia angusta DL-1]
          Length = 374

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 68/172 (39%), Gaps = 27/172 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSP--EALKL 62
           +  +  D E TGLD  ND IIEI A+    +     +  F+  +  +  + +   E  + 
Sbjct: 33  LPIVWIDCEMTGLDLLNDHIIEICALVTDKHLRLIDDEGFEAVIHYSQERMNQMDEWCRT 92

Query: 63  H----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI----AHNAKFDVGFINAELQRIN 114
           H    G+T + ++   +   + ++  ++ ++  ++ +     ++   D  F+  E+ +I 
Sbjct: 93  HHGDSGLTKKVVESSNTLEDVENQLLEYLSKYMSKGVGILAGNSVHVDRQFLCKEMPKI- 151

Query: 115 KDPLDPSRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                  RIID    + I+RR +P               +      H A  D
Sbjct: 152 -TDYLTYRIIDVSSIMEISRRHNPQVN----------EFSPEKVGAHTARSD 192


>gi|50310933|ref|XP_455489.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644625|emb|CAG98197.1| KLLA0F08998p [Kluyveromyces lactis]
          Length = 306

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 28/174 (16%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNS---PEAL 60
           K   +  D E TGLD  ND+IIE+  +             ++  +  +           +
Sbjct: 62  KQPIVWIDCEMTGLDHINDKIIEVCCIITDGQLNVADEDGYESVIHYDKSIMDNMNEWCI 121

Query: 61  KLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQR 112
             H   G+T + L    +   +  E  ++      +++      ++   D  F+  E  +
Sbjct: 122 NQHGFSGLTQKVLDSVKTREQVEEELLNYIKKWIPDQRQGVLAGNSVHMDRLFMLNEFPK 181

Query: 113 INKDPLDPSRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +        RIID    + +ARR +P          +   +T   +  H A  D
Sbjct: 182 VIDHLF--YRIIDVSSIMEVARRHNP----------QLASVTYKKKGAHTAKAD 223


>gi|158345168|ref|YP_001522875.1| hypothetical protein PPLKA1_gp34 [Enterobacteria phage LKA1]
 gi|114796464|emb|CAK25002.1| hypothetical protein [Pseudomonas phage LKA1]
          Length = 343

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 69  FLKDKPSFSS---IFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRII 124
            L    + +    + +E ++  NE +   +A N  +FD+  I A        P  P R+I
Sbjct: 140 DLSQAENIADDSKLVAELYELLNEADLV-VAQNGKRFDLPKIQARFVMAGYKPPRPFRVI 198

Query: 125 DTLSIARRKHPSSRNDL----NSLC 145
           DT+ +A+++   + N L    + LC
Sbjct: 199 DTMLMAKQQFGFTSNKLEWMTDKLC 223


>gi|148675135|gb|EDL07082.1| interferon-stimulated protein, isoform CRA_c [Mus musculus]
          Length = 145

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 11/140 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D E  GL  +  R+  +    +++ +      +  ++ P G        ++ G+T +
Sbjct: 8   VAMDCEMVGLGPQ--RVSGLARCSIVNIHGAVL--YDKYIRPEGEITDYR-TQVSGVTPQ 62

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +     F     E       +    + H+ K D   +  ++ +         R    L 
Sbjct: 63  HMVRATPFGEARLEILQLL--KGKLVVGHDLKHDFNALKEDMSKYTIYDTSTDR---LLW 117

Query: 129 IARRKHPSSRNDLNSLCKRY 148
              +    SR  L  LCKR 
Sbjct: 118 HEAKLQYYSRVSLRLLCKRL 137


>gi|84662629|ref|YP_453594.1| putative DNA polymerase III epsilon subunit [Xanthomonas phage OP1]
 gi|84570678|dbj|BAE72741.1| putative DNA polymerase III epsilon subunit [Xanthomonas oryzae
           phage OP1]
          Length = 279

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 95  IAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
           +AHN  KFD+  I A +      P+  +RI+DTL  +R+    + + L  L   +G
Sbjct: 104 VAHNGKKFDIRKIRARMSMNKLPPIPDTRIVDTLIESRKCFAHTSHKLAYLSTHFG 159


>gi|330937753|gb|EGH41635.1| exonuclease I [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 136

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 4/115 (3%)

Query: 13  DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDEFL 70
           D ETTG++ +NDR +++  +    D ++      +    +      P A  + GIT   L
Sbjct: 9   DYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMITGITPATL 68

Query: 71  KDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI 123
            +K        +      +        +N  +FD         R   DP      
Sbjct: 69  AEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREWQ 123


>gi|60097923|ref|NP_776900.2| three prime repair exonuclease 1 [Bos taurus]
 gi|59858151|gb|AAX08910.1| three prime repair exonuclease 1 isoform b [Bos taurus]
 gi|296474765|gb|DAA16880.1| three prime repair exonuclease 1 [Bos taurus]
          Length = 315

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 64/196 (32%), Gaps = 38/196 (19%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDY------------------SKTNRTFQVFL 48
              I  D+E TGL     +I E+  + +  Y                   +      + +
Sbjct: 12  QTLIFLDLEATGLPFSQPKITELCLLAVHRYALEGLSAPQGPSPTAPVPPRVLDKLSLCV 71

Query: 49  CPNGRKNSPEALKLHGITDEFLK--DKPSF-SSIFSEFWDFFNEQNAE--WIAHN-AKFD 102
            P G+  SP A ++ G++   L    + +F + + +    F   Q      +AHN  ++D
Sbjct: 72  AP-GKVCSPAASEITGLSTAVLAAHGRRAFDADLVNLIRTFLQRQPQPWCLVAHNGDRYD 130

Query: 103 VG-FINAELQRINKDPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGIT 151
                           LD +  +D+++  +            P     L S+  R YG  
Sbjct: 131 FPLLRAELALLGLASALDDAFCVDSITALKALEPTGSSSEHGPRKSYSLGSVYTRLYGQA 190

Query: 152 ISHRSKHGALLDSHLL 167
                 H A  D   L
Sbjct: 191 PPD--SHTAEGDVLAL 204


>gi|195470929|ref|XP_002087759.1| GE18196 [Drosophila yakuba]
 gi|194173860|gb|EDW87471.1| GE18196 [Drosophila yakuba]
          Length = 361

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 27/147 (18%)

Query: 9   KIVFDIETTGLDSKND---RIIEIGAV--------ELLDYSKTNRTFQVF---------- 47
             V D+ET  L +  +    I E+           +  +  +  +  Q            
Sbjct: 20  FAVLDLETNNLPAYQNNRVAITELCIYAFEAALLKKEKNEDQGEKKEQELPAAPRVLHKL 79

Query: 48  --LCPNGRKNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFN--EQNAEWIAHN-AKF 101
             L     K  PEA ++ G+++  L ++    +        F          +AHN   F
Sbjct: 80  NLLFQPSMKVFPEAERITGLSNYLLERESKLDADAAQLINGFLKHLPGPVCLVAHNGWGF 139

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLS 128
           D   +    +++N +       +D+L 
Sbjct: 140 DFPILRQTFEKLNIELPQSLTCVDSLR 166


>gi|148982513|ref|ZP_01816787.1| oligoribonuclease [Vibrionales bacterium SWAT-3]
 gi|145960438|gb|EDK25820.1| oligoribonuclease [Vibrionales bacterium SWAT-3]
          Length = 169

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 35/180 (19%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEA- 59
           +  +    I  D+E TGLD +  +IIEI  +       T+    +    P    + P++ 
Sbjct: 1   MSFSDQNLIWVDLEMTGLDPETHKIIEIATI------VTDSELNILAEGPVLAIHQPQSE 54

Query: 60  ---------LKLHG------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
                        G      I +  + ++ +     +    +  +  +    ++   D  
Sbjct: 55  LDKMDEWCTTTHTGSGLVKRIQESTVTEQDAIEQTIAFLEKWVPKGKSPICGNSIGQDRR 114

Query: 105 FINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   +  + +        + TL  +ARR  P     L+          S    H AL D
Sbjct: 115 FLYKHMPELEEYFHYRYVDVSTLKELARRWKPE---VLD--------GFSKSGSHLALDD 163


>gi|152996651|ref|YP_001341486.1| oligoribonuclease [Marinomonas sp. MWYL1]
 gi|150837575|gb|ABR71551.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1]
          Length = 185

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 24/153 (15%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEA- 59
           +  N+   +  D+E TGLD + D IIEI  V       T++   V    P+   +  +A 
Sbjct: 1   MSLNEENLVWIDLEMTGLDPETDTIIEIATV------VTDKHLNVLAKGPSLAIHQEKAV 54

Query: 60  --------LKLH---GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVG 104
                    + H   G+T   L    S      E   F  +      +    ++   D  
Sbjct: 55  MDAMDEWCTQHHGDSGLTARVLSSTISMEQAEEETIKFLAQYVPAGKSPICGNSVGQDRR 114

Query: 105 FINAELQRINKDPLDPSRIIDTL-SIARRKHPS 136
           F+   + ++          + T+  +A+R  P 
Sbjct: 115 FLYRYMPKLEVFFHYRYLDVSTVKELAKRWKPE 147


>gi|331698794|ref|YP_004335033.1| Oligoribonuclease [Pseudonocardia dioxanivorans CB1190]
 gi|326953483|gb|AEA27180.1| Oligoribonuclease [Pseudonocardia dioxanivorans CB1190]
          Length = 204

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 56/171 (32%), Gaps = 27/171 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNG---RKNSPEALKLH 63
           R +  D E TGLD + D +IEI  +              V +  +             +H
Sbjct: 4   RLVWIDCEMTGLDLQRDALIEIAVLVTDGDLNVLGEGVDVVIHADESALAAMPDVVRDMH 63

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINK 115
              G+T+E  +   +          +  E      +A    ++   D GF+  ++  +  
Sbjct: 64  ARSGLTEEVRRSTVTLQEAEQAVLAYVREHVPDPVSAPLAGNSIATDRGFLARDMPEL-- 121

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           D     R++D  SI    RR  P          + +         H AL D
Sbjct: 122 DAHLHYRMVDVSSIKELCRRWFP----------RVFYAKPEKGLAHRALAD 162


>gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
 gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
          Length = 944

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 32/143 (22%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + + + FD ETT L+     ++ +                 ++       S +  ++   
Sbjct: 370 QQKVVCFDTETTSLNELEAELVGMSFSYKKG-------LAYYI-----PLSEDRAEV--- 414

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                            F  FF +++   +AHN KFD   +         D      + D
Sbjct: 415 -----------LQTLEIFRPFFEKEDLLKVAHNLKFDYKVLKQ------YDITVKGAMFD 457

Query: 126 TLSIARRKHPSSRNDLNSLCKRY 148
           T+      +P  R+ ++ L + Y
Sbjct: 458 TMIAHYLLNPDGRHGMDYLSEVY 480


>gi|261345223|ref|ZP_05972867.1| oligoribonuclease [Providencia rustigianii DSM 4541]
 gi|282566919|gb|EFB72454.1| oligoribonuclease [Providencia rustigianii DSM 4541]
          Length = 180

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQV-----FLCP 50
           ++KN+   I  D+E TGLD   DRIIEI  +                  Q       +  
Sbjct: 1   MQKNENNLIWIDLEMTGLDPVRDRIIEIATIVTDSNLNILAEGPVIAVHQTEEQLALMDE 60

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
                   +  +  I    + ++ +  +       +  +  +    ++   D  F+   +
Sbjct: 61  WNVNTHTGSGLVDRIRKSTINEREAELATIEFLEKWVPKGASPICGNSVGQDRRFLFNYM 120

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +          + TL  +ARR  P        L        + +  H AL D
Sbjct: 121 PELESYFHYRYLDVSTLKELARRWKPEI------LA-----GFTKKGTHQALDD 163


>gi|47606205|sp|Q9BG99|TREX1_BOVIN RecName: Full=Three prime repair exonuclease 1; AltName: Full=3'-5'
           exonuclease TREX1
 gi|12751327|gb|AAK07622.1|AF319575_1 3'-5' exonuclease TREX1 [Bos taurus]
          Length = 315

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 64/196 (32%), Gaps = 38/196 (19%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDY------------------SKTNRTFQVFL 48
              I  D+E TGL     +I E+  + +  Y                   +      + +
Sbjct: 12  QTLIFLDLEATGLPFSQPKITELCLLAVHRYALEGLSAPQGPSPTAPVPPRVLDKLSLCV 71

Query: 49  CPNGRKNSPEALKLHGITDEFLK--DKPSF-SSIFSEFWDFFNEQNAE--WIAHN-AKFD 102
            P G+  SP A ++ G++   L    + +F + + +    F   Q      +AHN  ++D
Sbjct: 72  AP-GKVCSPAASEITGLSTAVLAAHGRRAFDADLVNLIRTFLQRQPQPWCLVAHNGDRYD 130

Query: 103 VG-FINAELQRINKDPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGIT 151
                           LD +  +D+++  +            P     L S+  R YG  
Sbjct: 131 FPLLRAELALLGLASALDDAFCVDSIAALKALEPTGSSSEHGPRKSYSLGSVYTRLYGQA 190

Query: 152 ISHRSKHGALLDSHLL 167
                 H A  D   L
Sbjct: 191 PPD--SHTAEGDVLAL 204


>gi|262374958|ref|ZP_06068192.1| oligoribonuclease [Acinetobacter lwoffii SH145]
 gi|262309971|gb|EEY91100.1| oligoribonuclease [Acinetobacter lwoffii SH145]
          Length = 185

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 23/175 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGR---KNS 56
           M      R I  D+E TGLD+ ND+IIEI  +   D         V  +    R      
Sbjct: 1   MSSTADTRLIWIDLEMTGLDTDNDQIIEIATIVTDDNLNILAEGPVLAVHQPARLLNAMD 60

Query: 57  PEALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
               + HG       +    L  + +          + N +++    ++   D  F++  
Sbjct: 61  EWNTRQHGQSGLIERVRRSKLTAQDAEQQTIEFLKKWVNPKSSPMCGNSICQDRRFLHRL 120

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + +     +  + ++  +A+R  P   + L              + H A+ D
Sbjct: 121 MPELEQYFHYRNLDVSSVKELAKRWRPEIMSGLKK-----------NASHLAMDD 164


>gi|168016825|ref|XP_001760949.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687958|gb|EDQ74338.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 597

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 81/250 (32%), Gaps = 39/250 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D E      +   +  +  V        ++     + P     +    +  GIT   
Sbjct: 241 IAVDCEMC-YTREGLELTRVSMVSSQGGVILDK----LVKPVN-PITDYNTQYSGITAAM 294

Query: 70  LKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-- 126
           + D   +   +  E     + +    + H+ + D+  +           +  S +IDT  
Sbjct: 295 MADVTATLKDVQDEILRSVHAE-TILVGHSVENDLIALK----------ILHSLVIDTAL 343

Query: 127 LSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           L     + P  +  L  L  RY    I    ++ H ++ D+    D+ +  +  G     
Sbjct: 344 LYHHPTRGPMCKPALRMLTGRYLKRKIQ-GDKAGHDSVEDARAAMDLALLKISKGPGFGK 402

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI----------TKEELDEHDKTIQTLGK 233
             K N +   +   +     SL+ R   L              + +E+    K ++ + K
Sbjct: 403 RMKPNCESLIEVLGRQDRRSSLIDRRPMLLQYAVGSCNAIIANSDDEVCA--KAVKEVKK 460

Query: 234 NA---IWDRY 240
            A   +W ++
Sbjct: 461 TAVNFVWAQF 470


>gi|116252858|ref|YP_768696.1| hypothetical protein RL3116 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257506|emb|CAK08603.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 204

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 16/163 (9%)

Query: 26  IIEIGAVELLDYSK--TNRTFQVFLCPNGR-----KNSPEALKLHGITDEFLK-DKPSFS 77
           I +IGAV+L    +     T++ ++ P  R        P    L GIT+E +     +  
Sbjct: 32  IAQIGAVKLGLEGEFPILDTYKSYVRPIDRFGKRYPLDPYFTNLTGITEEDIDTHGVALQ 91

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS 137
              S    F     A + +     ++  +          P  P+R  D            
Sbjct: 92  DALSGVDRF--SGGARFWSWGKD-ELNMLAISCYVAGVQPAIPARRFDNAVKLLVAAGMP 148

Query: 138 RNDL-----NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             DL     N L   Y +       H  L D+  +S     +M
Sbjct: 149 IEDLAKTPSNKLADYYQVEHPPLRGHDGLDDALSISYALQHLM 191


>gi|157114139|ref|XP_001652178.1| exonuclease nef-sp [Aedes aegypti]
 gi|108877412|gb|EAT41637.1| exonuclease nef-sp [Aedes aegypti]
          Length = 586

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 79/229 (34%), Gaps = 42/229 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E          +  +  ++     + N  ++  + P  +       +  GIT E +K
Sbjct: 254 LDCEMCKTSIGASELTRVSIID----EEGNEFYETLVRPENKIVDYL-TQFSGITAEMMK 308

Query: 72  D-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           D   +   +  +  +     +A  +  +  FD+  +                +IDT  + 
Sbjct: 309 DVSKTLKDVQKDLRNKL-PPDAILVGQSLNFDLNALKMM----------HPYVIDTSILF 357

Query: 131 RRKH-PSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
                P +++ L  L +++    I  S R  H ++ D    + + +  +     I FG +
Sbjct: 358 NVTGTPGTKSKLKVLSQKFLKRDIQCSSRG-HNSIEDC--TASLELVKLKLSKNIYFGDQ 414

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
             +DR            +  KR K      T E+       IQ LG+N+
Sbjct: 415 WLQDR-----------RNYHKRVKSKVGIATPED-------IQRLGENS 445


>gi|229004426|ref|ZP_04162173.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
           Rock1-4]
 gi|228756826|gb|EEM06124.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
           Rock1-4]
          Length = 52

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           K  P F  +     +    Q A +IAHN  FD  F+  EL++     ++ ++ 
Sbjct: 2   KQAPLFCDVAPMVAELL--QGAYFIAHNVHFDWNFLKEELKQAGYGEVNCTKN 52


>gi|118443420|ref|YP_878592.1| exonuclease [Clostridium novyi NT]
 gi|118133876|gb|ABK60920.1| exonuclease [Clostridium novyi NT]
          Length = 205

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 17/184 (9%)

Query: 10  IVFDIE--TTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK- 61
           +  D E  TT +           IIE+G +         + +   + P    NS +  K 
Sbjct: 19  LAIDFEFITTKIVENKAKKYFQEIIEVGVI--FKSESLTQKYSKVIKPRYFLNSKDKSKS 76

Query: 62  LHG--ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PL 118
           ++G   + + +K+    + +F E    +  +   WI+     +   +     +   + P 
Sbjct: 77  IYGGRFSYDDIKNGEEINKVFLELQQLYTPKETLWISWGKA-EYDILKTVCNKYGINLPF 135

Query: 119 DPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                +D     +  +   +N  L+       I I +R  H A+ D+  L  +  KM   
Sbjct: 136 LKEDYLDLSLEFKEFYGIGQNASLDKALNYLNIPIINR--HYAIFDAQALMSIIHKMFKD 193

Query: 178 GSQI 181
           G ++
Sbjct: 194 GYRL 197


>gi|255072965|ref|XP_002500157.1| predicted protein [Micromonas sp. RCC299]
 gi|226515419|gb|ACO61415.1| predicted protein [Micromonas sp. RCC299]
          Length = 260

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 52/178 (29%), Gaps = 27/178 (15%)

Query: 8   RKIVFDIETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R +  D E  G   D        +  V++            F+ P+ R  +    KL G+
Sbjct: 96  RAVALDCEMVGTEEDGSGAMCARVCIVDVRGSVL----LSTFVAPD-RPITDHRTKLTGV 150

Query: 66  TDEFLKDKPSFSSIFSEFWDFF---------NEQNAEWIAHNAKFDVGFINAELQRINKD 116
               L   PS   + +               ++  A  + H+ + D+  +          
Sbjct: 151 DPGSLVGAPSLREVRTAVLAVLNGSKRTAAADDDKALLVGHDLQHDLECL--------GI 202

Query: 117 PLDPSRIIDTLSI-ARRKHPSSRNDLNSLCK-RYGITISHRS-KHGALLDSHLLSDVY 171
                   DT      ++H  +   L +L     G +I      H    D+     +Y
Sbjct: 203 KWPGRLCRDTARHPPLQRHTHAPFKLRTLAADHLGESIQREGVAHDPREDAWAAMRLY 260


>gi|53804954|ref|YP_113371.1| exonuclease [Methylococcus capsulatus str. Bath]
 gi|53758715|gb|AAU93006.1| exonuclease [Methylococcus capsulatus str. Bath]
          Length = 192

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 61/177 (34%), Gaps = 11/177 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEALKLHGIT 66
            +  DIE  G       ++ IGAV           F V L   P    +   A       
Sbjct: 10  YVSVDIEADGPIPGPHSMLSIGAVAYGAQGDLLGEFTVNLETLPGAAPHPAMAEWWRQFP 69

Query: 67  ---DEFLKDKPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
              +   ++    +   + F D+  E      ++A  A +D  +I   L           
Sbjct: 70  EAWNAHRRNTRPPAEAMNAFADWLEELPGKPIFLAWPATWDFMWIYWYLICFTGRRPFSE 129

Query: 122 RIIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             ID  S A   R+    ++  N L KR+  +  H   H AL D+    D++I M+ 
Sbjct: 130 HGIDVRSYAMGMRRQTFGKSGKNYLPKRW--SSPHPHTHIALDDAREQGDLFIAMLR 184


>gi|73951436|ref|XP_545846.2| PREDICTED: similar to interferon stimulated exonuclease gene
           20kDa-like 1 [Canis familiaris]
          Length = 324

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 23/181 (12%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   +  R+ E+    ++ Y   +  +  ++ P          +  G+T 
Sbjct: 109 KCVAIDCEMVGTGPRG-RVSELARCSVVSYHG-DVLYDKYIRPE-MPIVDYRTRWSGVTR 165

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT- 126
           + ++    F     E       +    + H    D   +     R        S+  DT 
Sbjct: 166 QHMRKAIPFQVAQKEILKLL--KGKVVVGHALHNDFQALKYVHPR--------SQTRDTT 215

Query: 127 ----LSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
               L      H  +R  L  L  +     I       H ++ D+    ++Y +++    
Sbjct: 216 YVPNLLHQPGLHTRTRVSLKDLALQLLHKKIQAGQHG-HSSVEDATTAMELY-RLVEVQW 273

Query: 180 Q 180
           +
Sbjct: 274 E 274


>gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
 gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
          Length = 951

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 57/148 (38%), Gaps = 32/148 (21%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + +  K + + FD ETT +++ +  +                +F        ++     +
Sbjct: 371 LTKLLKEKSVCFDTETTDINALHADL-------------VGMSFSY------KEREAYYV 411

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +        KDK    +I  EF  FF  ++ E IAHN K+D+  ++    R       P
Sbjct: 412 AV-------PKDKKEIQAIVDEFKPFFEHKSIEKIAHNMKYDIQVLH----RYGVQFAGP 460

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRY 148
             + DT+       P S+  ++ L + Y
Sbjct: 461 --LFDTMIAHYLIQPESKQGMDFLAEYY 486


>gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
 gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
          Length = 952

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 35/147 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG +     ++ +      +          +  P                DE LK
Sbjct: 383 IDTETTGTEPMEAELVGMSFSNAENR--------AYYVPVPAN-----------RDEALK 423

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                  I +EF   +  +N+  +  N K+D+  +     ++           DT+    
Sbjct: 424 -------IVNEFRPLYENENSMKVGQNIKYDMIVLQNYGVQVKGKLF------DTMLAHY 470

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKH 158
              P  R++++ L + Y   + +R+ H
Sbjct: 471 VLQPELRHNMDYLAEIY---LRYRTIH 494


>gi|167764029|ref|ZP_02436156.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
           43183]
 gi|167698145|gb|EDS14724.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
           43183]
          Length = 952

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG +     ++ +   +  +        Q +  P                DE LK
Sbjct: 383 IDTETTGTEPMEAELVGMSFSDAEN--------QAYYVPVPAN-----------RDEALK 423

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                  I +EF   +  +N+  +  N K+D+  +     ++           DT+    
Sbjct: 424 -------IVNEFRPLYENENSMKVGQNIKYDMIVLQNYGVQVKGKLF------DTMLAHY 470

Query: 132 RKHPSSRNDLNSLCKRY 148
              P  R++++ L + Y
Sbjct: 471 VLQPELRHNMDYLAEIY 487


>gi|322708669|gb|EFZ00246.1| exonuclease [Metarhizium anisopliae ARSEF 23]
          Length = 731

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 28/172 (16%)

Query: 8   RKI-VFDIET--TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           R++   D E   TG +     +  I  V        +      + P+ +  +    +  G
Sbjct: 335 REVLALDCEMCMTGENEF--ALTRISIVSWDGSVVLDE----LVKPD-KPITDYVTRFSG 387

Query: 65  ITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           IT+E L   P   +   I ++  D  + +    + H+ + D   I             P 
Sbjct: 388 ITEEML--APVTTTLRDIQAKLLDLLHPR-TILLGHSLESDTKAIQ---------IAHPF 435

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDV 170
            +  ++     + P  ++ L  L ++Y    I       H ++ D+    D+
Sbjct: 436 IVDTSMLYPHPRGPPLKSSLKYLAQKYLSREIQKGGAEGHNSIEDAKTCLDL 487


>gi|255943993|ref|XP_002562764.1| Pc20g02050 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587499|emb|CAP85534.1| Pc20g02050 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 604

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 62/181 (34%), Gaps = 22/181 (12%)

Query: 17  TGLDSKNDRIIE-------------IGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           TG  +    I+              +  +  +D+         ++ P     +     + 
Sbjct: 372 TGGSAHRKAIVIACEMIETTVSTSVLAFITAIDFLTGEVLINSYVAPT-APVTNWLTPVT 430

Query: 64  GITDEF----LKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           GIT E     + D  +F  +       D F +++   I H  + D+  +N    RI    
Sbjct: 431 GITPEAMEAAIADGKAFLSNDAVRRALDKFLDKDTVVIGHAIQHDLRALNLLHGRIVDIS 490

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMV 176
           +  +  + +   ++   P    +L +L K   GI I     H  L D+    +V I  + 
Sbjct: 491 VVTAEAVFSNFSSKTTLPRIW-ELKTLAKELRGIDIQPGLAHNPLEDAVATREVLIWCLR 549

Query: 177 G 177
           G
Sbjct: 550 G 550


>gi|323337414|gb|EGA78665.1| Rnh70p [Saccharomyces cerevisiae Vin13]
          Length = 318

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE-- 68
             D E   L  +   +  I  V   +       ++  + P+         +  GIT+E  
Sbjct: 67  ALDCEMC-LSEQGLVLTRISLVNFDNEVI----YEELVKPD-VPIVDYLTRYSGITEEKL 120

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  K +   +  +     +  +   I H+ + D+  +           L    ++DT  
Sbjct: 121 TVGAKKTLREVQKDLLKIISRSD-ILIGHSLQNDLKVMK----------LKHPLVVDTAI 169

Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-IKMMVGGSQINFGFK 186
           I   K     +  L  L + +        +H ++ D+    ++  +K++ G   + FG  
Sbjct: 170 IYHHKAGDPFKPSLKYLSETFLNKSIQNGEHDSVEDARACLELTKLKILNG---LAFGIG 226

Query: 187 TNEDRFFKEEKK 198
            N +  F +  +
Sbjct: 227 INTENLFTKLHR 238


>gi|289742037|gb|ADD19766.1| 3'-5' exonuclease [Glossina morsitans morsitans]
          Length = 287

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 53/172 (30%), Gaps = 20/172 (11%)

Query: 8   RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + +  D E  G+  K   D +  +  V        ++    F+ P     +     + GI
Sbjct: 118 KYVAMDCEMVGVGYKGQDDMLARVSIVNKRGEVLLDK----FVKP-CEIVTDYRTSISGI 172

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
               +++   F  +  +       Q    + H    D+  +  +            + + 
Sbjct: 173 RPHNIENGDDFHDVQDQVKKLI--QGKILVGHGIAKDLAVLQIKHPYPLIRDTARYKPLC 230

Query: 126 TLSIARRKHPSSRNDLNSLC---KRYGITISHRSKHGALLDSHLLSDVYIKM 174
            L    R  PS +      C      G+ I     H ++ D+     +Y K+
Sbjct: 231 RLVANGRT-PSLK------CITHAILGLDIQSGE-HNSIEDARAAMKIYNKL 274


>gi|32128447|ref|NP_858982.1| exonuclease related to epsilon chain of DNA polymerase [Xanthomonas
           phage Xp10]
 gi|148727212|ref|YP_001285704.1| p35 [Xanthomonas phage Xop411]
 gi|31788510|gb|AAP58702.1| 34L [Xanthomonas phage Xp10]
 gi|116583512|gb|ABK00182.1| p35 [Xanthomonas phage Xop411]
          Length = 245

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 95  IAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
           +AHN  KFD+  I A L      P+  +RI+DTL  +R+    + + L  L   +G
Sbjct: 70  VAHNGKKFDIRKIRARLSMNKLPPIPDTRIVDTLIESRKCFAHTSHKLAYLSTHFG 125


>gi|319760221|ref|YP_004124159.1| oligoribonuclease [Candidatus Blochmannia vafer str. BVAF]
 gi|318038935|gb|ADV33485.1| oligoribonuclease [Candidatus Blochmannia vafer str. BVAF]
          Length = 182

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 32/169 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-------LCPNGRKNSP-EALKL- 62
            D+E TGL+ + DRIIEI  +       T+    +        +     K S  ++  + 
Sbjct: 8   IDLEMTGLNPEKDRIIEIATL------ITDSELNILSTGPNLAINQTELKLSEMDSWNVR 61

Query: 63  ----HGITDEFLKDKPSFSSI----FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
               +G+  +    K +             ++ + Q +     +   D  F+   + ++ 
Sbjct: 62  THSANGLLTQVRSSKLNECDASNLTIKFLKNWISFQKSPICGSSVAQDRRFLIKYMPKL- 120

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +     R +D +S  +      R+DL       G+ + H+  H AL D
Sbjct: 121 -ESYFNHRYLD-VSTIKELVMRWRSDLIV-----GLKV-HKKTHRALED 161


>gi|228470367|ref|ZP_04055270.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
 gi|228307949|gb|EEK16832.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
          Length = 948

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 32/136 (23%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD ET GLD+    I+ +           +     F+          A +   I    
Sbjct: 359 VAFDTETDGLDALCAGIVGMSLCA-------DEKQAYFI-----PLPESAEEATHI---- 402

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                      S   +   ++    +AHNAKFD+  +     R       P  + DT+  
Sbjct: 403 ----------LSPLKELMQDERVLKVAHNAKFDLEVLT----RYGLPEARP--LYDTMLA 446

Query: 130 ARRKHPSSRNDLNSLC 145
                    + L+ L 
Sbjct: 447 HYLIDADQGHSLDELA 462


>gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
 gi|217986035|gb|EEC52374.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
          Length = 952

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 35/147 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG +     ++ +      +          +  P                DE LK
Sbjct: 383 IDTETTGTEPMEAELVGMSFSNAENR--------AYYVPVPAN-----------RDEALK 423

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                  I +EF   +  +N+  +  N K+D+  +     ++           DT+    
Sbjct: 424 -------IVNEFRPLYENENSMKVGQNIKYDMIVLQNYGVQVKGKLF------DTMLAHY 470

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKH 158
              P  R++++ L + Y   + +R+ H
Sbjct: 471 VLQPELRHNMDYLAEIY---LRYRTIH 494


>gi|119182868|ref|XP_001242536.1| hypothetical protein CIMG_06432 [Coccidioides immitis RS]
 gi|303319481|ref|XP_003069740.1| Zn-finger in Ran binding protein and others domain containing
           protein [Coccidioides posadasii C735 delta SOWgp]
 gi|240109426|gb|EER27595.1| Zn-finger in Ran binding protein and others domain containing
           protein [Coccidioides posadasii C735 delta SOWgp]
 gi|320040805|gb|EFW22738.1| RNA binding protein [Coccidioides posadasii str. Silveira]
          Length = 618

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 31/171 (18%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R IV  + TT    G+    D   +IE+G +  +     + +R   V + P     +P  
Sbjct: 14  RYIVIHVSTTCDEHGVYVTKDSAEVIELGWILLDTKSCEELHRE-SVLVKPINTPITPLC 72

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
             L  +T E ++   +F    + F  F  E     ++ N +F    +++   R+      
Sbjct: 73  TSLTTLTWEHVRSAGTFRDAINRFDAFAQEH---LLSKNLEFAFVTLDSWDMRVQLPREA 129

Query: 116 --------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGIT 151
                     L  SR  D  +  +R         P   +DL+++C    + 
Sbjct: 130 RDKAVVLPPYLQHSRTFDLRTEYQRWQQHHPESLPFGPSDLSNICAALEVE 180


>gi|215273997|sp|Q3U1G5|I20L2_MOUSE RecName: Full=Interferon-stimulated 20 kDa exonuclease-like 2
          Length = 368

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 64/187 (34%), Gaps = 15/187 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   K  R+  +    +++Y+  +  +  ++ P     +    +  GI  
Sbjct: 193 KMVAIDCEMVGTGPKG-RVSSLARCSIVNYNG-DVLYDEYVLPPCYIVNYR-TRWSGIRK 249

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + +   F +  S+     + +    I H    D   +     +     L        L
Sbjct: 250 CHMVNATPFKTARSQILKILSGK--VVIGHAIHNDYKALQYFHPK----SLTRDTSRIPL 303

Query: 128 SIARRKHPSSRN-DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
              +   P +    L  L K+     I + + + H ++ D+    ++Y K++    + + 
Sbjct: 304 LNRKADCPENVTLSLKHLTKKLLSRDIQVGN-TGHSSVEDAQATMELY-KLVEVEWEQHL 361

Query: 184 GFKTNED 190
                E+
Sbjct: 362 AQNPPEN 368


>gi|148683381|gb|EDL15328.1| interferon stimulated exonuclease gene 20-like 2 [Mus musculus]
          Length = 295

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 64/187 (34%), Gaps = 15/187 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   K  R+  +    +++Y+  +  +  ++ P     +    +  GI  
Sbjct: 120 KMVAIDCEMVGTGPKG-RVSSLARCSIVNYNG-DVLYDEYVLPPCYIVNYR-TRWSGIRK 176

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + +   F +  S+     + +    I H    D   +     +     L        L
Sbjct: 177 CHMVNATPFKTARSQILKILSGK--VVIGHAIHNDYKALQYFHPK----SLTRDTSRIPL 230

Query: 128 SIARRKHPSSRN-DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
              +   P +    L  L K+     I + + + H ++ D+    ++Y K++    + + 
Sbjct: 231 LNRKADCPENVTLSLKHLTKKLLSRDIQVGN-TGHSSVEDAQATMELY-KLVEVEWEQHL 288

Query: 184 GFKTNED 190
                E+
Sbjct: 289 AQNPPEN 295


>gi|29244084|ref|NP_808331.1| interferon-stimulated 20 kDa exonuclease-like 2 [Mus musculus]
 gi|26343725|dbj|BAC35519.1| unnamed protein product [Mus musculus]
          Length = 368

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 64/187 (34%), Gaps = 15/187 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   K  R+  +    +++Y+  +  +  ++ P     +    +  GI  
Sbjct: 193 KMVAIDCEMVGTGPKG-RVSSLARCSIVNYNG-DVLYDEYVLPPCYIVNYR-TRWSGIRK 249

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + +   F +  S+     + +    I H    D   +     +     L        L
Sbjct: 250 CHMVNATPFKTARSQILKILSGK--VVIGHAIHNDYKALQYFHPK----SLTRDTSRIPL 303

Query: 128 SIARRKHPSSRN-DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
              +   P +    L  L K+     I + + + H ++ D+    ++Y K++    + + 
Sbjct: 304 LNRKADCPENVTLSLKHLTKKLLSRDIQVGN-TGHSSVEDAQATMELY-KLVEVEWEQHL 361

Query: 184 GFKTNED 190
                E+
Sbjct: 362 AQNPPEN 368


>gi|74217538|dbj|BAE33533.1| unnamed protein product [Mus musculus]
          Length = 369

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 64/187 (34%), Gaps = 15/187 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   K  R+  +    +++Y+  +  +  ++ P     +    +  GI  
Sbjct: 194 KMVAIDCEMVGTGPKG-RVSSLARCSIVNYNG-DVLYDEYVLPPCYIVNYR-TRWSGIRK 250

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + +   F +  S+     + +    I H    D   +     +     L        L
Sbjct: 251 CHMVNATPFKTARSQILKILSGK--VVIGHAIHNDYKALQYFHPK----SLTRDTSRIPL 304

Query: 128 SIARRKHPSSRN-DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
              +   P +    L  L K+     I + + + H ++ D+    ++Y K++    + + 
Sbjct: 305 LNRKADCPENVTLSLKHLTKKLLSRDIQVGN-TGHSSVEDAQATMELY-KLVEVEWEQHL 362

Query: 184 GFKTNED 190
                E+
Sbjct: 363 AQNPPEN 369


>gi|313897750|ref|ZP_07831291.1| exonuclease [Clostridium sp. HGF2]
 gi|312957285|gb|EFR38912.1| exonuclease [Clostridium sp. HGF2]
          Length = 320

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 16/150 (10%)

Query: 26  IIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFW 84
           ++ +GAV   D  +   TF   +CP N R+ +    K+  + D  +++  SF  +  +F 
Sbjct: 23  VVSLGAVLKKDAQE--ATFYSLVCPKNFRRLTSVVRKMTHLKDSDIRNANSFPDVLKQFM 80

Query: 85  DFF----NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI--ARRKHP--- 135
            +        +    +     D   +  E  R + DP     I+D      A+  +    
Sbjct: 81  QWLQPYMESSSCRMYSF-GPDDRRTLLQECARHHCDPSLFEGILDLQKQISAKVTYQNVL 139

Query: 136 -SSRNDLNSLCKRYGITISHRSKHGALLDS 164
            S+   L+ L   Y I      +H AL D+
Sbjct: 140 VSATLSLDDLKTAYAIE--GAVEHNALTDA 167


>gi|303257152|ref|ZP_07343166.1| oligoribonuclease [Burkholderiales bacterium 1_1_47]
 gi|302860643|gb|EFL83720.1| oligoribonuclease [Burkholderiales bacterium 1_1_47]
          Length = 180

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 39/179 (21%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA----- 59
           N+   I  D+E TGL+ + +RI+E+ AV       T+    V           +A     
Sbjct: 3   NENNLIWMDLEMTGLEPQINRILEMAAV------ITDPQLNVIAEGPVVAIHQDASILSN 56

Query: 60  -----LKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFIN 107
                   H   G+ +  L+ K +       F DFF+       +    ++   D  F+ 
Sbjct: 57  MDSWNTATHTRSGLVNRCLESKVTEDEAAQIFIDFFSKYVPAGKSPLCGNSIGQDRRFMA 116

Query: 108 AELQRINKDPLDPSRIIDTL---SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
               R+  +     R +D        +R  P        + K+Y  T    S+H AL D
Sbjct: 117 RWTPRL--EQFFHYRNLDVSSFKECVKRWAPE-------VMKKYQKT----SRHEALSD 162


>gi|310658482|ref|YP_003936203.1| hypothetical protein CLOST_1178 [Clostridium sticklandii DSM 519]
 gi|308825260|emb|CBH21298.1| protein of unknown function [Clostridium sticklandii]
          Length = 303

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 50/146 (34%), Gaps = 30/146 (20%)

Query: 12  FDIETTGLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FDIETTGL+SK D II I  A    D     R +                        F 
Sbjct: 23  FDIETTGLNSKYDSIILICAAFYYSDNEILIRQY------------------------FA 58

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRIIDTLS 128
           +D     SI   F +           +   FD+ F+   +  +  N+  LD    ID LS
Sbjct: 59  EDIKDEKSIILYFLEDIASMRRCINFNGNTFDLPFLKKRISNLSINEPILDNMESIDILS 118

Query: 129 IAR---RKHPSSRNDLNSLCKRYGIT 151
             R   +        L ++ K + I 
Sbjct: 119 YLRPLKKIWNFENLKLKTVEKFFSIE 144


>gi|217076341|ref|YP_002334057.1| DNA polymerase I [Thermosipho africanus TCF52B]
 gi|217036194|gb|ACJ74716.1| DNA polymerase I [Thermosipho africanus TCF52B]
          Length = 892

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 57/190 (30%), Gaps = 59/190 (31%)

Query: 12  FDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
            D ETT LD    ++  I I  +E   Y      F       G KN  ++L         
Sbjct: 322 IDTETTSLDPFEAKLVGISISTMEGKAYYIPVSHF-------GAKNISKSL--------- 365

Query: 70  LKDKPSFSSIFSEFWD-FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                       +F      E++   +  N KFD        + +   P       DT+ 
Sbjct: 366 ----------IDKFLKQILQEKDYNIVGQNLKFDY----EIFKSMGFSP--NVPHFDTMI 409

Query: 129 IARRKHPS-SRNDLNSLCKRY-------------------GITISHRSKHGAL----LDS 164
            A   +P   R +L  L  +Y                   G   S+     A+     D+
Sbjct: 410 AAYLLNPDEKRFNLEELSLKYLGYKMISFDELVNENVPLFGNDFSYVPLERAVEYSCEDA 469

Query: 165 HLLSDVYIKM 174
            +   ++ K+
Sbjct: 470 DVTYRIFRKL 479


>gi|90416474|ref|ZP_01224405.1| oligoribonuclease [marine gamma proteobacterium HTCC2207]
 gi|90331673|gb|EAS46901.1| oligoribonuclease [marine gamma proteobacterium HTCC2207]
          Length = 188

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 37/178 (20%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNGRKNS 56
           + +  I  D+E TGL  + DRIIEI  V                       +        
Sbjct: 11  DPLNLIWIDLEMTGLSPERDRIIEIATVVTDKDLNVLAEGPMIAVHQSDELID----GMD 66

Query: 57  PEALKLH---GITD----EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
               + H   G+T+      + +  +  +       +    ++    ++   D  F+   
Sbjct: 67  EWNTRQHGGSGLTERVRQSLVTEAEAELATIEFLRQWVPAGSSPMCGNSICQDRRFLANY 126

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH----RSKHGALLD 163
           +  + +      R +D             + L  L +R+   +++    R  H A+ D
Sbjct: 127 MTDLQR--FFHYRNLDV------------STLKELVQRWKPELANGFKKRGSHLAMDD 170


>gi|219681916|ref|YP_002468302.1| oligoribonuclease [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|219682471|ref|YP_002468855.1| oligoribonuclease [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|257471622|ref|ZP_05635621.1| oligoribonuclease [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|219622204|gb|ACL30360.1| oligoribonuclease [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219624759|gb|ACL30914.1| oligoribonuclease [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|311086294|gb|ADP66376.1| oligoribonuclease [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311087458|gb|ADP67538.1| oligoribonuclease [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
          Length = 184

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 57/176 (32%), Gaps = 27/176 (15%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNR---------TFQVFLCPN 51
           ++ NK   I  D+E TGL+ K  RIIEI   +   + +                + +   
Sbjct: 1   MKINKKNLIWIDLEMTGLNPKVHRIIEIATLITDTNLNIIAEGPVIPIYQKKEHILVMDE 60

Query: 52  GRKNSPEALKLHGITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
             K   E    +G+     K    ++ +          +   Q +    ++   D  F+ 
Sbjct: 61  WNKRIHEN---NGLIKRVEKSLYNEQKAEHETILFLKKWVPIQVSPMCGNSIAQDRRFLF 117

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  +  +     R ID  +I    +  + + L+               H AL D
Sbjct: 118 QYMPHL--ENYFHYRYIDVSTIKELAYRWNPSILDK--------FKKNHHHKALED 163


>gi|315651981|ref|ZP_07904983.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315485810|gb|EFU76190.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 358

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 25/127 (19%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + + FDIETTGL  KN  +  IG + + + +     F+ + C                  
Sbjct: 24  KLLFFDIETTGLSPKNSNLYLIGCINVDNDNII---FKQWFC------------------ 62

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIIDT 126
           E L D    + +   F+++  E +     +   FD+ +I    ++    +PL   + +D 
Sbjct: 63  ESLSD---ETDVLQAFFEYAIEFDTIINFNGDGFDLPYIRECAKQYYIFNPLTDYKSLDI 119

Query: 127 LSIARRK 133
               R  
Sbjct: 120 YKEIRYL 126


>gi|291000550|ref|XP_002682842.1| predicted protein [Naegleria gruberi]
 gi|284096470|gb|EFC50098.1| predicted protein [Naegleria gruberi]
          Length = 202

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 61/199 (30%), Gaps = 30/199 (15%)

Query: 7   MRKI-VFDIET-----TGLDSKND-RIIEIGAV----ELLDYSKTNRTFQVFLCPNGRK- 54
            + I V D E         +   D  IIE  +V    E           Q ++       
Sbjct: 1   FKYICVLDFEAVFADDCKTNRNYDMEIIEFPSVLLKFESEKQLVVVDEIQNYVKTRRIPK 60

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG--- 104
            + E  KL GIT E ++   SF        ++          ++   +A    +D+    
Sbjct: 61  INEECTKLTGITQEMVESGVSFEEALKRHNEWLMSHLGEKPTKDNILMATCGDWDLKTMI 120

Query: 105 -----FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
                F    +  I         + D    A+  +    N + ++     + +  +  H 
Sbjct: 121 PHQVFFEKQTISLIGSHFTQWCNVKDV--FAKFYNMEKVNGMLTMLNALKLPLLGK-HHS 177

Query: 160 ALLDSHLLSDVYIKMMVGG 178
            + D   ++ V  KM   G
Sbjct: 178 GIDDCKNIARVVCKMAQQG 196


>gi|1206035|gb|AAA90924.1| DNA polymerase epsilon catalytic subunit [Homo sapiens]
          Length = 2285

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 67/207 (32%), Gaps = 46/207 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 272 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 330

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKD---- 116
                  + ++P  + +   +++   E +    + +N   FD  F+ A            
Sbjct: 331 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMQQE 386

Query: 117 -----------PLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYG---ITISHRSKHG- 159
                             +D L   +R    P   ++L +   + G   + +        
Sbjct: 387 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAASKLGYDPVELDPEDMCRM 446

Query: 160 -----------ALLDSHLLSDVYIKMM 175
                      ++ D+     +Y+K +
Sbjct: 447 ATEQPQTLATYSVSDAVATYYLYMKYV 473


>gi|37528414|ref|NP_931759.1| oligoribonuclease [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|41017433|sp|Q7MYS8|ORN_PHOLL RecName: Full=Oligoribonuclease
 gi|36787852|emb|CAE16967.1| oligoribonuclease [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 181

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 57/188 (30%), Gaps = 51/188 (27%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + K++   I  D+E TGLD + DRIIEI  +                           + 
Sbjct: 1   MSKSEHNLIWIDLEMTGLDPERDRIIEIATIVTDANLNILDE-------------GPVIA 47

Query: 62  LHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEWIA 96
           +H  +DE L                          D+ +  +       +     +    
Sbjct: 48  VHQ-SDEQLALMDKWNVRTHTGSGLVERVKASKIDDREAEKATIEFLEKWVPAGASPICG 106

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHR 155
           ++   D  F+   +  +          + TL  +ARR  P     L  L K+        
Sbjct: 107 NSVSQDRRFLFRYMPELEAYFHYRYLDVSTLKELARRWKPEI---LAGLKKQ-------- 155

Query: 156 SKHGALLD 163
           + H AL D
Sbjct: 156 NTHQALDD 163


>gi|319792320|ref|YP_004153960.1| exonuclease rnase t and DNA polymerase iii [Variovorax paradoxus
           EPS]
 gi|315594783|gb|ADU35849.1| Exonuclease RNase T and DNA polymerase III [Variovorax paradoxus
           EPS]
          Length = 198

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 50/178 (28%), Gaps = 27/178 (15%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV-------ELLDYSKTNRTFQVFLCPNGRK 54
           ++K+    +  D E +GLD + + ++EI  V         +D           +      
Sbjct: 16  LKKSDQNLVWLDCEMSGLDPEKEFLLEIAVVVTGPDLTPRIDGPVLVIHQSDAVLD---A 72

Query: 55  NSPEALKLHG----ITD---EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
                   HG    I       L +  +   +      +     +    +    D  F+ 
Sbjct: 73  MDAWNKGTHGRSGLIDKVKASTLDEAAAEQQLLEFIAKYIPRSGSPMCGNTIGQDRRFLV 132

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
             + ++       +  + TL    ++   S                 +  H AL D H
Sbjct: 133 KFMPKLEAYFHYRNLDVSTLKELAKRWKPSAYS----------AFKKQQAHTALADVH 180


>gi|149408180|ref|YP_001294614.1| hypothetical protein ORF021 [Pseudomonas phage PA11]
          Length = 255

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 79  IFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS 137
           I  E     ++ +   +AHN  KFD+  IN         P  P + +DTL +A R+    
Sbjct: 63  ITQELISVLDDAD-IVVAHNGDKFDLPTINGRALVHGLKPPSPYKTVDTLKVAHREFKFE 121

Query: 138 RNDLNSLCKRYG 149
           RN+L  L    G
Sbjct: 122 RNNLEYLAHVLG 133


>gi|315656346|ref|ZP_07909235.1| oligoribonuclease [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492905|gb|EFU82507.1| oligoribonuclease [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 198

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 24/165 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS---PEALKLH---G 64
            D E TGLD   D +IE+  +    + +  +    + + P+    +       ++H   G
Sbjct: 4   IDCEMTGLDLHVDELIEVAVIVTDAELNPLDSGIDLLIKPSATAMNHMGEFVREMHTKSG 63

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +  + L    S      +  D+          A+   ++   D  F+  ++  +      
Sbjct: 64  LLAK-LDTGLSVEEAGRQVLDYVKRLVPEPGKAQLAGNSVHSDKAFLAKQMPELINWLHY 122

Query: 120 PSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
               + TL  +A R +P          K YG+       H AL D
Sbjct: 123 RIIDVSTLKELAMRWYP----------KVYGLAPEKTGNHRALGD 157


>gi|53728767|ref|ZP_00135217.2| COG1949: Oligoribonuclease (3'->5' exoribonuclease) [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208604|ref|YP_001053829.1| oligoribonuclease [Actinobacillus pleuropneumoniae L20]
 gi|165976560|ref|YP_001652153.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|190150461|ref|YP_001968986.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|303250117|ref|ZP_07336319.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|303253291|ref|ZP_07339440.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307246049|ref|ZP_07528131.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307248157|ref|ZP_07530185.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307250390|ref|ZP_07532338.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|307252772|ref|ZP_07534663.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307255031|ref|ZP_07536849.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307257187|ref|ZP_07538959.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|307259467|ref|ZP_07541192.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|307261616|ref|ZP_07543284.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|307263805|ref|ZP_07545411.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|166215747|sp|A3N1D8|ORN_ACTP2 RecName: Full=Oligoribonuclease
 gi|126097396|gb|ABN74224.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|165876661|gb|ABY69709.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|189915592|gb|ACE61844.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|302647973|gb|EFL78180.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|302651180|gb|EFL81334.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306852984|gb|EFM85207.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306855334|gb|EFM87509.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306857600|gb|EFM89708.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306859804|gb|EFM91826.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306861904|gb|EFM93880.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306864349|gb|EFM96260.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306866403|gb|EFM98266.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306868739|gb|EFN00548.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306870926|gb|EFN02664.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 184

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 64/179 (35%), Gaps = 31/179 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLCPNG 52
           M + +    I  D+E TGLD + +RIIE+  +               T       L    
Sbjct: 1   MSKLDNQNLIWIDLEMTGLDPEKERIIEVATIVTDKDLNILAEGPVLTVHQSNDLLN--- 57

Query: 53  RKNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGF 105
            K S   +K H   G+ +   + K +  ++  +  DF  +      +    ++   D  F
Sbjct: 58  -KMSDWCIKTHTENGLIERVKQSKLTERAVELQTIDFLKQWVPKGASPICGNSVAQDKRF 116

Query: 106 INAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   +  +          + TL  +ARR  P     LN+         + ++ H AL D
Sbjct: 117 LYKYMPDLADYFHYRHLDVSTLKELARRWKPDM---LNA--------FNKKNTHLALDD 164


>gi|307132771|ref|YP_003884787.1| oligoribonuclease [Dickeya dadantii 3937]
 gi|306530300|gb|ADN00231.1| oligoribonuclease [Dickeya dadantii 3937]
          Length = 183

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 58/180 (32%), Gaps = 35/180 (19%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M+ +N +  I  D+E TGLD + DRIIEI  +                 P    + P++ 
Sbjct: 4   MVNENNL--IWIDLEMTGLDPERDRIIEIATLVTDANLNVLAE-----GPTLAVHQPDSQ 56

Query: 61  -------KLHGITDEFLKD---KPSFSSIFSE------FWDFFNEQNAEWIAHNAKFDVG 104
                   +   T   L D     +F    +E         +     +    ++   D  
Sbjct: 57  LALMDDWNVRTHTASGLVDRVKASAFDEGAAERETIAFLQQWVPAGKSPICGNSIGQDRR 116

Query: 105 FINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   +  +          + TL  +ARR  P        L          R+ H AL D
Sbjct: 117 FLFRYMPELEAYFHYRYLDVSTLKELARRWKPEM------LA-----GFKKRNTHQALDD 165


>gi|258571315|ref|XP_002544461.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237904731|gb|EEP79132.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 610

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 31/171 (18%)

Query: 8   RKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           R IV  + TT    G+    D   +IE+G +  +     + +R   V + P     +P  
Sbjct: 14  RYIVIHVSTTCDEHGVYVTKDSAEVIELGWILLDTKSCEELHRE-SVLVKPVNTPITPLC 72

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115
             L  +T E ++   +F    + F  F  E     ++ N +F    +++   R+      
Sbjct: 73  TSLTTLTWEHVRSAGTFRDAVNRFDAFAQEH---LLSKNLEFAFVTLDSWDMRVQLPREA 129

Query: 116 --------DPLDPSRIIDTLSIARRK-------HPSSRNDLNSLCKRYGIT 151
                     L  SR  D  +  +R         P   +DL ++C    + 
Sbjct: 130 RDKAVVLPPYLQHSRTFDLRTEYQRWQQHHPESLPFGPSDLANICAALEVE 180


>gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
 gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
          Length = 885

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 47/140 (33%), Gaps = 28/140 (20%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD ET  LD+ N +I+                F   L  +     P A    G    
Sbjct: 322 WVAFDTETNALDAYNAKIVG---------------FSFALNEHEAYYVPLAHHYLG---- 362

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            + ++             F  +    +  N K+D+  I       N      S   DT+ 
Sbjct: 363 -VGEQIGMEEAKEALKKLFKHK---IVGQNLKYDLAVIEN-----NFGLRLSSSYADTML 413

Query: 129 IARRKHPSSRNDLNSLCKRY 148
           +A   +P S   L++L KR+
Sbjct: 414 MAWLLNPESNVGLDTLAKRF 433


>gi|325983556|ref|YP_004295958.1| exonuclease RNase T and DNA polymerase III [Nitrosomonas sp. AL212]
 gi|325533075|gb|ADZ27796.1| Exonuclease RNase T and DNA polymerase III [Nitrosomonas sp. AL212]
          Length = 181

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 60/178 (33%), Gaps = 30/178 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----S 56
           M + N    I  D+E TGL+  NDRIIE+  V       T     V +     +      
Sbjct: 1   MAQDNN-NLIWVDMEMTGLNPDNDRIIEVALVITDSQLNTVAEGPVLVVHQPDEILNGMD 59

Query: 57  PEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAE 109
                 H   G+ D+        + + ++  +F         +    ++   D  F+   
Sbjct: 60  KWNQSTHAKSGLIDKVKASTLKEAEVEAQMVEFLKLHVPSGISPMCGNSICQDRRFMVRS 119

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG----ITISHRSKHGALLD 163
           + ++  +     R +D             + L  L KR+        S  SKH AL D
Sbjct: 120 MPQL--EAYFHYRNLDV------------STLKELAKRWKPEIVANFSKDSKHEALAD 163


>gi|119899889|ref|YP_935102.1| DNA polymerase I [Azoarcus sp. BH72]
 gi|119672302|emb|CAL96216.1| DNA polymerase I [Azoarcus sp. BH72]
          Length = 918

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 45/154 (29%), Gaps = 42/154 (27%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLCPNGRK 54
           R      + FD ETT LD  + R++ +         A   L +  T+             
Sbjct: 336 RLEATPLVAFDTETTSLDPMSARLVGMSFALAQGEAAYLPLAHRGTD------------- 382

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
                          +  +     + +    +        +  N K+D   +     R+ 
Sbjct: 383 ---------------VPQQLPLDEVLARLKPWLESDRHAKLGQNLKYDAHVLLNHGIRLG 427

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                     DTL  +        +D++SL KR+
Sbjct: 428 GIT------HDTLLESYVLESDKPHDMDSLAKRH 455


>gi|255010273|ref|ZP_05282399.1| putative DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 964

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 34/141 (24%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITD 67
            +  D ETTG D  +  ++ +      + +        ++  P GR+   EA K      
Sbjct: 393 ILALDTETTGTDPMDAELVGMSFSIAENQA-------FYIPVPAGRE---EATK------ 436

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                      I  EF   F    +  +  N K+D+  +       N       R+ DT+
Sbjct: 437 -----------IVREFESVFKNDKSLKVGQNIKYDMLVLQ------NYGIEIRGRLFDTM 479

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P  R++++ L + Y
Sbjct: 480 VAHYVLQPELRHNMDYLAEIY 500


>gi|85860590|ref|YP_462792.1| exonuclease [Syntrophus aciditrophicus SB]
 gi|85723681|gb|ABC78624.1| exonuclease [Syntrophus aciditrophicus SB]
          Length = 88

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 3  RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFL 48
          +++  R +V DIETTGL   +   II+IGAV L +  + +  FQ  +
Sbjct: 27 KESDQRIVVLDIETTGLIPKRGHCIIKIGAVALKNN-EISSKFQNLI 72


>gi|149751412|ref|XP_001500480.1| PREDICTED: similar to Interferon stimulated exonuclease gene
           20kDa-like 2 [Equus caballus]
          Length = 349

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 19/189 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   K   +  +    +++Y+  +  +  ++ P          +  GI  
Sbjct: 174 KMVAIDCEMVGTGPKGH-VSSLARCSIVNYNG-DVLYDEYILPPCHIVDYR-TRWSGIRK 230

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +   F    S+            + H    D   +          P   +R    +
Sbjct: 231 QHMVNATPFKIARSQILKIL--TGKIVVGHAIHNDFKALQYFH------PKSLTRDTSHI 282

Query: 128 SIARRKHPSSRN---DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
               RK     N    L  L K+     I +  +S H ++ D+    ++Y K++    + 
Sbjct: 283 PPLNRKADCPENATMSLKRLTKKLLNRDIQV-GKSGHSSVEDAQATMELY-KLVEVEWEQ 340

Query: 182 NFGFKTNED 190
           +       D
Sbjct: 341 HLAQNPPND 349


>gi|210635237|ref|ZP_03298449.1| hypothetical protein COLSTE_02380 [Collinsella stercoris DSM 13279]
 gi|210158455|gb|EEA89426.1| hypothetical protein COLSTE_02380 [Collinsella stercoris DSM 13279]
          Length = 321

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 64/172 (37%), Gaps = 19/172 (11%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCPNGRKNSPEALK-LHGI 65
            DIETTG   +   II +G  EL+D       +  R F   + P   + +   L  +H I
Sbjct: 135 IDIETTGRAPERGYIINVG-WELMDLKSDAVPRDPRAFYCGI-PEMYRETGVPLADIHHI 192

Query: 66  TDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFIN------AELQRINKDPL 118
               L+ K  F        +     +    +AHNA F+  +        AE +R  K  +
Sbjct: 193 QWSDLEGKTPFRQDVKLQKELLKLMKRYPIMAHNAAFEDSWFMLHLPGYAEARRAGKIIV 252

Query: 119 DPSRIID-TLSIARRKHPSS--RNDLNSLCKRYG-ITISHRSKHGALLDSHL 166
             SR I  ++    R  P       L +  +R G +       H  L D+ L
Sbjct: 253 IDSRHICRSIDGEVRALPRESAPASLQNWARRRGTLAADENELHLGLDDTDL 304


>gi|126334326|ref|XP_001377008.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 712

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 72/233 (30%), Gaps = 46/233 (19%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E   L    + +  +  V+   +   +      + P+ +  +    +  GIT + L 
Sbjct: 190 LDCEMC-LTPNGNELTRVSLVDAEGHCVMDE----LVKPDNKILNYL-TRFSGITRKIL- 242

Query: 72  DKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-L 127
            KP       +  +        +A  + H+   D+  +      +          IDT L
Sbjct: 243 -KPVTTRLRDVQVKLKKLL-PPDAVLVGHSLNADLKALQMIHLNV----------IDTSL 290

Query: 128 SIARRKHPSSRNDLNSLCKR-YG--ITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
              R      R  L  L K   G  I    R  H +  D+    ++    +  G +   G
Sbjct: 291 LFVRDL--GRRFKLKFLAKAVLGKEIQCPDRVGHDSTEDAIATLELAQYFIKHGPRKKAG 348

Query: 185 -------------FKTNEDRFFKEEKKTVP-----NISLLKRDKPLFTRITKE 219
                          T+++   ++ +  VP      I   +   PL   +T E
Sbjct: 349 GNAFTSSRFCRSILCTSDEEVLEQAQAEVPLSSFSIIQFSQCPHPLSPSLTVE 401


>gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
 gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 941

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 34/141 (24%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITD 67
            +  D ETTG D  +  ++ +      + +        ++  P GR+   EA K      
Sbjct: 370 ILALDTETTGTDPMDAELVGMSFSIAENQA-------FYIPVPAGRE---EATK------ 413

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                      I  EF   F    +  +  N K+D+  +       N       R+ DT+
Sbjct: 414 -----------IVREFESVFKNDKSLKVGQNIKYDMLVLQ------NYGIEIRGRLFDTM 456

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P  R++++ L + Y
Sbjct: 457 VAHYVLQPELRHNMDYLAEIY 477


>gi|320541129|ref|ZP_08040515.1| putative exonuclease I [Serratia symbiotica str. Tucson]
 gi|320028808|gb|EFW11101.1| putative exonuclease I [Serratia symbiotica str. Tucson]
          Length = 107

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 13  DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFL 70
           D ET G     DR  +   V   +D++       ++  P +     PEA+ + GIT +  
Sbjct: 14  DYETFGKSPSMDRPAQFAGVRTDMDFNIIEEPLVIYCAPADDYLPEPEAVMITGITPQQA 73

Query: 71  KDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFD 102
           + K  + +    +    F+      + +N  +FD
Sbjct: 74  RAKGVNEAEFARQIHQAFSMPGTCILGYNNIRFD 107


>gi|320096134|ref|ZP_08027731.1| oligoribonuclease [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319976935|gb|EFW08681.1| oligoribonuclease [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 200

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 60/167 (35%), Gaps = 28/167 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRK---NSPEALKLH---G 64
            D E TGLD   D +IE+  V    D +  +    V + P        S     +H   G
Sbjct: 4   IDCEMTGLDVGADALIEVAVVITGADLTVVDPGIDVLIAPPAAALEGMSDFVRDMHTKSG 63

Query: 65  ITDEFLKDKPSFSS----IFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD 119
           + D  LKD  +       + S    F  E     +A N+   D  F+ A +  +  D L 
Sbjct: 64  LLD-DLKDGVTMEEATERVLSYIKRFVPEAGKALLAGNSVGTDKMFLEANMPAV-IDHLH 121

Query: 120 PSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             R+ID  SI   A+R + S           +         H AL D
Sbjct: 122 -YRLIDVSSIKELAKRWYRS----------AFAEAPEKHGGHRALAD 157


>gi|325087366|gb|EGC40676.1| exonuclease [Ajellomyces capsulatus H88]
          Length = 782

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 69/211 (32%), Gaps = 18/211 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E    +  + ++  +  V        +      + P+ +       +  GIT E L+
Sbjct: 396 LDCEMCITEGGSSQLTRVSLVSWDGEVVLDD----LVKPD-KPIIDYLTRFSGITKEMLE 450

Query: 72  DKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              +    +  +       +    I H+   D+  +             P  +  ++   
Sbjct: 451 PVTTRLPDVQQKLLTLLTPR-TILIGHSLNSDLSAL---------KLTHPFIVDTSIIYP 500

Query: 131 RRKHPSSRNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             + P  ++ L  L ++Y G  I      H ++ D+  + ++  +    G +      +N
Sbjct: 501 HPRGPPLKSSLKWLSQKYLGKEIQKGQDGHDSIEDARAVLELVKQKCEKGERWGTSDASN 560

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           E  F +  + TVP  +     K   T    +
Sbjct: 561 ETIFRRLARATVPGKTASGATKEGRTGAVAD 591


>gi|240273466|gb|EER36986.1| RNA exonuclease [Ajellomyces capsulatus H143]
          Length = 598

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 69/211 (32%), Gaps = 18/211 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E    +  + ++  +  V        +      + P+ +       +  GIT E L+
Sbjct: 212 LDCEMCITEGGSSQLTRVSLVSWDGEVVLDD----LVKPD-KPIIDYLTRFSGITKEMLE 266

Query: 72  DKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              +    +  +       +    I H+   D+  +             P  +  ++   
Sbjct: 267 PVTTRLPDVQQKLLTLLTPR-TILIGHSLNSDLSAL---------KLTHPFIVDTSIIYP 316

Query: 131 RRKHPSSRNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             + P  ++ L  L ++Y G  I      H ++ D+  + ++  +    G +      +N
Sbjct: 317 HPRGPPLKSSLKWLSQKYLGKEIQKGQDGHDSIEDARAVLELVKQKCEKGERWGTSDASN 376

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           E  F +  + TVP  +     K   T    +
Sbjct: 377 ETIFRRLARATVPGKTASGATKEGRTGAVAD 407


>gi|330873800|gb|EGH07949.1| oligoribonuclease [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 178

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 59/179 (32%), Gaps = 37/179 (20%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNG----- 52
            +NK   I  D+E TGLD   D IIE+  +       T+           +  +      
Sbjct: 1   MQNKQNLIWIDLEMTGLDPDTDVIIEMATI------ITDSELNTLAEGPVIAVHQSDETL 54

Query: 53  RKNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGF 105
            K      + H   G+T    +   S +   ++  +F      E+++    ++   D  F
Sbjct: 55  AKMDEWNTRQHGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   +  +       +  + TL  +A R  P  +    S              H AL D
Sbjct: 115 LYRHMSALENYFHYRNLDVSTLKELAARWAPELKFKKGS-------------THLALDD 160


>gi|218778072|ref|YP_002429390.1| exonuclease RNase T and DNA polymerase III [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759456|gb|ACL01922.1| Exonuclease RNase T and DNA polymerase III [Desulfatibacillum
           alkenivorans AK-01]
          Length = 175

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 24/164 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNG-RKNSPEALKLH---G 64
            D+E TGL+  N  I+EI  +     L+         +F  P+      P +L  H   G
Sbjct: 4   IDMEMTGLNPDNSVIVEIATLITDGDLNLVAEGPELAIFHPPHVLENIDPWSLDQHTASG 63

Query: 65  ITD----EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           + D      +    +         ++  E+      ++   D  F+   +  +    L  
Sbjct: 64  LLDRVKASDVDTAQAEKLTLDFIKEYCAEKECPLAGNSVWQDRRFMVKYMPLLEDFLLHR 123

Query: 121 SRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              + T+  + +R +P                     +H AL D
Sbjct: 124 MVDVSTIKELFKRWYPDMA------------PFVKTHEHTALAD 155


>gi|60679700|ref|YP_209844.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|253564511|ref|ZP_04841968.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|251948287|gb|EES88569.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R]
          Length = 941

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 32/140 (22%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTG D  +  ++ +      +        Q F  P   +   EA+K       
Sbjct: 370 ILALDTETTGTDPMDAELVGMSFSITEN--------QAFYVPVPAER-EEAIK------- 413

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                     I  EF   F  + +  +  N K+D+  +       N       ++ DT+ 
Sbjct: 414 ----------IVREFEPVFKNEKSLKVGQNIKYDMLVLQ------NYGIEVRGKLFDTMV 457

Query: 129 IARRKHPSSRNDLNSLCKRY 148
                 P  R++++ L + Y
Sbjct: 458 AHYVLQPELRHNMDYLAEIY 477


>gi|300868897|ref|ZP_07113503.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300333114|emb|CBN58695.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 1009

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 39/174 (22%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + +D ETT L+ ++  ++ IG         T      ++ P G K           T +
Sbjct: 410 PVAWDTETTALEPRDAELVGIGCCW-----GTGEADLAYI-PTGHK-----------TGQ 452

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L        +         + N      NAKFD   +  +  ++           DT+ 
Sbjct: 453 NLDKAI----VLEALRPILEDNNYPKALQNAKFDRLILRCQGIKLAGVVF------DTML 502

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            +    P   ++L +LCK Y            L D  L +  Y  ++     I 
Sbjct: 503 ASYVIDPEGSHNLTALCKEY------------LEDPKLTAKSYKDLVSKEQTIA 544


>gi|229821136|ref|YP_002882662.1| Exonuclease RNase T and DNA polymerase III [Beutenbergia cavernae
           DSM 12333]
 gi|229567049|gb|ACQ80900.1| Exonuclease RNase T and DNA polymerase III [Beutenbergia cavernae
           DSM 12333]
          Length = 235

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 66/184 (35%), Gaps = 39/184 (21%)

Query: 1   MIRKNKMRKIV-FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPE 58
           M + +    IV  D E TGLD   D ++E+  +    +    +    V + P      P 
Sbjct: 1   MSQPSAKDPIVWIDCEMTGLDLATDALVEVAVIVTDSELHPLDGGIDVVIAP-----PPG 55

Query: 59  AL--------KLH---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFD 102
           AL        ++H   G+ DE L      +   +   D+        + A    ++   D
Sbjct: 56  ALEAMGDVVREMHTTSGLLDE-LAGGVELAEAHALVLDYVRRLVPDPRRAPLAGNSVGTD 114

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
            GF+  ++  +        RIID  SI   ARR +P          + Y  +      H 
Sbjct: 115 RGFLERDMPDLVGHL--HYRIIDVSSIKELARRWYP----------RVYFNSPPKAGGHR 162

Query: 160 ALLD 163
           AL D
Sbjct: 163 ALAD 166


>gi|315252572|gb|EFU32540.1| exonuclease [Escherichia coli MS 85-1]
          Length = 489

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 45/195 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAV--------------ELLD----YSKTNR-TFQVFLCPNG 52
            D+ET G +  +  II IGA+              + +D        +R T + +L  + 
Sbjct: 311 IDLETMGKNP-DAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIKWWLKQSR 369

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINA 108
              S               D+        +  +F +E + E+  H       FD   +  
Sbjct: 370 EAQSAIMT-----------DEIPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILRR 418

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             +R       P R  +   +          D ++   R  I      +H AL D+   +
Sbjct: 419 SYERQGIP--CPWRYYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDARYQA 472

Query: 169 D----VYIKMMVGGS 179
                ++ K++   +
Sbjct: 473 KYVSAIWQKLIPSQA 487


>gi|309776358|ref|ZP_07671345.1| exonuclease superfamily [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915877|gb|EFP61630.1| exonuclease superfamily [Erysipelotrichaceae bacterium 3_1_53]
          Length = 320

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 78/204 (38%), Gaps = 22/204 (10%)

Query: 26  IIEIGAV-ELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
           ++ +GAV +  D+     TF   +CP N  + +    K+  + D  ++   SF ++ + F
Sbjct: 23  VVSLGAVLKWEDHE---ETFYSLVCPQNFHRLTSVVRKMTHLRDRDIRAAESFPAVLAAF 79

Query: 84  WDFFNE-QNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI------ARRKHP 135
             +       ++ +      D   +  E +R + DP     +ID           ++   
Sbjct: 80  MKWLQPFHGDDFKVYSFGPDDRRTLLQECERYHCDPTLFQNMIDLQKQISAQVIYQQVIV 139

Query: 136 SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKE 195
           SS   L+ L   Y   I    +H AL D+  L      M++  + +     T E      
Sbjct: 140 SSTLSLDDLKTAY--LIEGTVEHNALTDARDL------MLIHQASMKRKPDT-EAVCGIV 190

Query: 196 EKKTVPNISLLKRDKPLFTRITKE 219
           E+K      + ++ +    RI KE
Sbjct: 191 ERKLSKQQEVARKQREKLFRIMKE 214


>gi|295394431|ref|ZP_06804655.1| oligoribonuclease [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972783|gb|EFG48634.1| oligoribonuclease [Brevibacterium mcbrellneri ATCC 49030]
          Length = 200

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 24/169 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGR---KNSPEALKLH 63
           + +  D E TGL+ + D +IE+ A+    D +  +    V + P+ R     +     +H
Sbjct: 5   KIVWIDCEMTGLELEVDELIEVAAIVTDFDLNPVDEGVDVIIKPSQRARENMNDFVTNMH 64

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINK 115
              G+ D+ L    S     +   D+  +       A    ++   D  F+  ++ ++  
Sbjct: 65  TTSGLIDK-LDAGMSVDEAATIVLDYIKKHVPEAGKAPLGGNSVGTDKTFLQKQMPQVVD 123

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  +A+R  P          K Y         H AL D
Sbjct: 124 HLHYRIIDVSTVKELAKRWLP----------KAYFHAPEKTGGHRALGD 162


>gi|149622113|ref|XP_001521618.1| PREDICTED: similar to HEM45 [Ornithorhynchus anatinus]
          Length = 281

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 49/165 (29%), Gaps = 12/165 (7%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLHGITDE 68
           +  D E  GL        E G              +  F+ P G        ++ G+  E
Sbjct: 110 VSLDCEMVGLGPGGH---ESGLARCSLVGYHGNVLYDRFVRPEGTITDYR-TRVSGVCKE 165

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +K+   F+    E       +    + H+ + D   + A++           R    L 
Sbjct: 166 DMKNATPFAEAREEILRLL--EGKLVVGHDLQHDFEALKADMASYEIYDTSKDR---LLW 220

Query: 129 IARRKHPSSRNDLNSL-CKRYGITISHR-SKHGALLDSHLLSDVY 171
                    R  L  L  K     I    S H ++ D+    ++Y
Sbjct: 221 EVGGLGACRRVSLKVLTLKILKKNIQTGWSGHSSVEDAKATMELY 265


>gi|302189797|ref|ZP_07266470.1| oligoribonuclease [Pseudomonas syringae pv. syringae 642]
          Length = 178

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 58/180 (32%), Gaps = 39/180 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNG----- 52
            +NK   I  D+E TGLD   D IIE+  +       T+           +  +      
Sbjct: 1   MQNKQNLIWIDLEMTGLDPDTDVIIEMATI------ITDSELNTLAEGPVIAVHQSDETL 54

Query: 53  RKNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGF 105
            K      + H   G+T    +   S +   ++  +F      E+++    ++   D  F
Sbjct: 55  AKMDEWNTRQHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGALLD 163
           +   +  +       +  + T              L  L  R+   +     S H AL D
Sbjct: 115 LYRHMPALENYFHYRNLDVST--------------LKELAARWSPELKFKKGSTHLALDD 160


>gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46]
 gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46]
          Length = 935

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 32/140 (22%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTG D  +  ++ +      +        Q F  P   +   EA+K       
Sbjct: 364 ILALDTETTGTDPMDAELVGMSFSITEN--------QAFYVPVPAER-EEAIK------- 407

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                     I  EF   F  + +  +  N K+D+  +       N       ++ DT+ 
Sbjct: 408 ----------IVREFEPVFKNEKSLKVGQNIKYDMLVLQ------NYGIEVRGKLFDTMV 451

Query: 129 IARRKHPSSRNDLNSLCKRY 148
                 P  R++++ L + Y
Sbjct: 452 AHYVLQPELRHNMDYLAEIY 471


>gi|134106503|ref|XP_778262.1| hypothetical protein CNBA2620 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260965|gb|EAL23615.1| hypothetical protein CNBA2620 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 214

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 22/169 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS---PEALKLHG--- 64
            D E TGLD  NDRIIEI  +      +  +      +               + HG   
Sbjct: 16  VDCEMTGLDFLNDRIIEIAVIITDGRLNPVDGGISYIIKTPKEVLDNMGDWCREQHGKSG 75

Query: 65  -----ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQRINKDPL 118
                +   +L D      +      +  E+ A  +A  +   D+ F+   +  + K   
Sbjct: 76  LIQACLDSPYLYD-TVVEKVLDYIRRWIPERGAGLLAGSSVHADMRFMLMGMPEVMKHLS 134

Query: 119 DPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
                + ++  I RR +P  R        +   + +    H AL D   
Sbjct: 135 YRILDVSSVKEICRRWYPKVR-------AQEQESRTTECSHRALDDIRA 176


>gi|321259047|ref|XP_003194244.1| hypothetical protein CGB_E2360C [Cryptococcus gattii WM276]
 gi|317460715|gb|ADV22457.1| conserved hypothetical protein [Cryptococcus gattii WM276]
          Length = 593

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 14/97 (14%)

Query: 9   KIVFDIETTGLDSKN----DRIIEIGAVELL------DYSKT---NRTFQVFLCPNGRKN 55
            + FD+E T    K     + IIE   V +       +  +      +F+ ++ P  R  
Sbjct: 183 FLCFDVEATCRGGKEFDYPNEIIEFPVVLVRWGEPDEEGKRVLEKIDSFRSYVRPTWRPI 242

Query: 56  SPEALK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
             +  K L GI  E +   P F  +  +  ++ ++ +
Sbjct: 243 LTDFCKSLTGIQQETVDKSPIFPEVLKQLEEWLDKWD 279


>gi|290477090|ref|YP_003470002.1| oligoribonuclease [Xenorhabdus bovienii SS-2004]
 gi|289176435|emb|CBJ83244.1| oligoribonuclease [Xenorhabdus bovienii SS-2004]
          Length = 181

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 63/179 (35%), Gaps = 33/179 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNG--R 53
           + K++   I  D+E TGL+ + DRIIEI  +        L        +Q    P+    
Sbjct: 1   MSKSENNLIWIDLEMTGLEPERDRIIEIATIVTDSELNILAEGPVIAVYQ----PDEQLA 56

Query: 54  KNSPEALKLH---GITDEFLK-----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
                 ++ H   G+  E +K     D  +  +  +    +     +    ++   D  F
Sbjct: 57  LMDDWNVRTHTASGLV-ERVKQSQFGDAEAEKATIAFLEQWVPAGKSPICGNSVGQDRRF 115

Query: 106 INAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   +  + K        + TL  +ARR  P   +             S ++ H AL D
Sbjct: 116 LFRYMPELEKYFHYRYLDVSTLKELARRWKPEMLSG-----------FSKKNTHQALDD 163


>gi|162455935|ref|YP_001618302.1| oligoribonuclease [Sorangium cellulosum 'So ce 56']
 gi|161166517|emb|CAN97822.1| oligoribonuclease [Sorangium cellulosum 'So ce 56']
          Length = 187

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 52/174 (29%), Gaps = 24/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----SP 57
           +     R +  D+E TGLD  +  I+EI  +               +           S 
Sbjct: 1   MTDRSQRMVWVDLEMTGLDESSCAIVEIATIVTEPDLTVVAEGPCLVIHQPESVLAGMSD 60

Query: 58  EALKLH-------GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
               LH        I    L    + S   +      ++  A    ++   D  F+   +
Sbjct: 61  FVRDLHERSGLLERIRASTLSVGDAESETRAFLEAHCDKGTAVLCGNSVWKDRAFLQRYM 120

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +          + TL  + RR +P     L +  K+       R  H AL D
Sbjct: 121 PELLSFLHYRIVDVSTLKELVRRWYP-----LRAAPKK-------REIHRALDD 162


>gi|326527927|dbj|BAJ89015.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 259

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 57/180 (31%), Gaps = 33/180 (18%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCP--NGRKNSPEALK 61
           KM  +  D+E TGLD + DRI+EI  +   D   T R     + +        N  E  K
Sbjct: 68  KMPLVWIDLEMTGLDIRKDRILEIACIIT-DGKLTKRIEGPDLVIRQSKECLDNMNEWCK 126

Query: 62  LH----GITDE----FLKDKPSFS---------SIFSEFWDFFNEQNAEWIAHNAKFDVG 104
            H    G+T++     + +  +            +      +          ++   D+ 
Sbjct: 127 THHGASGLTEQVQQSDISECDAEKQTHCYLQTCQVLDFVRRYIGSATPLIAGNSIYTDLL 186

Query: 105 FINAELQRINKDPLDPSRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   + ++          + +++    R  P  R                   H AL D
Sbjct: 187 FLKEYMPQLAGIFPHVIVDVSSITALCIRWFPKER----------KQAPRKEKNHRALDD 236


>gi|308048230|ref|YP_003911796.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
 gi|307630420|gb|ADN74722.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
          Length = 181

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 58/178 (32%), Gaps = 38/178 (21%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEA---------LK 61
            D+E TGLD + + IIEI  +       T+    V    P    + PE+         ++
Sbjct: 11  IDLEMTGLDPEQNTIIEIATI------VTDSELNVLAEGPVLAVHQPESELAKMDEWNVR 64

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRIN 114
            H   G+T+     K   +    +   F  E      +    ++   D  F+   +  + 
Sbjct: 65  THGNSGLTERVRASKVDMAEAERQTLAFLAEWVPAGASPICGNSVGQDRRFLVKYMPAL- 123

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD-----SHLL 167
            +     R ID  ++         + L+          S    H AL D     + L 
Sbjct: 124 -EAYFHYRTIDVSTVKELVRRWEPSLLD--------QFSKAGTHQALDDIRESIAELT 172


>gi|45185903|ref|NP_983619.1| ACR217Cp [Ashbya gossypii ATCC 10895]
 gi|44981693|gb|AAS51443.1| ACR217Cp [Ashbya gossypii ATCC 10895]
          Length = 225

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 32/174 (18%)

Query: 8   RKIV-FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLH-- 63
           + IV  D E TGLD  +D IIE+  +    + +  +  ++  +  +    +         
Sbjct: 31  KPIVWIDCEMTGLDHTSDHIIEVCCLVTDGHLNPVDDGYESVVHASAAALAAMDAWCTQH 90

Query: 64  ----GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRIN 114
               G+T   L    S + + +E   +          A    ++   D  F+  +   + 
Sbjct: 91  HGASGLTARALACPKSAAQVEAELLAYIRRLVPRPGRAVLAGNSVHMDRLFMLRDFPAV- 149

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLD 163
                  RIID             + L  +C R+   +       R+ H A  D
Sbjct: 150 -VAHLSHRIIDV------------SSLAEVCARHNPALHAATPRKRAAHTARAD 190


>gi|323187728|gb|EFZ73029.1| exonuclease family protein [Escherichia coli RN587/1]
          Length = 826

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 60/189 (31%), Gaps = 30/189 (15%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFL----------CPNGRKNSPEAL 60
            D+ET G +  N  I+ IGAV       +   TF + +           P+G        
Sbjct: 645 LDLETMGTN-TNAPIVVIGAVFFDPQTGEIGPTFYIVISLADAMTTGAVPDGSTIEWWLA 703

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE----WIAHNAKFDVGFINAELQRINKD 116
           +        L D+         F +F +E + E       + A FD   +    +R    
Sbjct: 704 QSSEARSAILVDQVKLKDALLRFREFISEHSDEKFVQVWGNGATFDNTILRRSYERQGIT 763

Query: 117 -PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS-----HLLSDV 170
            P       D      R        ++   K   I      +H AL D+     ++ + +
Sbjct: 764 CPWHYCNDRDV-----RTIVEQGKTIDFDAKTA-IPFEG-VRHNALDDALHQAKYVTATI 816

Query: 171 YIKMMVGGS 179
             KM+   +
Sbjct: 817 -QKMIPDQA 824


>gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381]
 gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381]
          Length = 875

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 28/141 (19%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           ++I FD ETT +DS N +I+             +     ++ P                 
Sbjct: 313 KEIAFDTETTSVDSHNAKIVGFSFCW-------DEKSSFYV-PLAHSYLGA--------P 356

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + L       +I     +    +    I  N K+D   +     R N     P++  DT+
Sbjct: 357 DMLD-----KNIAKRLIEAIYTK--FIIGQNLKYDFRIV-----RNNFGLNPPAKYADTM 404

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
            +A    P +   +++L KRY
Sbjct: 405 ILAWLMDPDNSVGMDNLAKRY 425


>gi|120555687|ref|YP_960038.1| oligoribonuclease [Marinobacter aquaeolei VT8]
 gi|166216266|sp|A1U4D2|ORN_MARAV RecName: Full=Oligoribonuclease
 gi|120325536|gb|ABM19851.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
          Length = 180

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 56/149 (37%), Gaps = 22/149 (14%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA----- 59
           N  R I  D+E TGLD + +RIIE+ ++                 P    + P++     
Sbjct: 3   NGDRLIWIDLEMTGLDPEQERIIEMASIITDSQLNIVAE-----GPVIAIHQPDSLLEQM 57

Query: 60  ----LKLHGIT--DEFLKDK-PSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINA 108
                + HG +   + +K+   S +    +  +F  +      +    ++   D  F+  
Sbjct: 58  DEWCTRTHGASGLTQRVKESTISEAEAEQQTLEFLGKHLEPGQSPLCGNSIGQDRRFLVK 117

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPS 136
            + ++       +  + T+  +ARR  P 
Sbjct: 118 YMPKLEAFFHYRNLDVSTVKELARRWRPD 146


>gi|66043831|ref|YP_233672.1| oligoribonuclease [Pseudomonas syringae pv. syringae B728a]
 gi|75503630|sp|Q4ZYY8|ORN_PSEU2 RecName: Full=Oligoribonuclease
 gi|63254538|gb|AAY35634.1| Exonuclease [Pseudomonas syringae pv. syringae B728a]
 gi|330971545|gb|EGH71611.1| oligoribonuclease [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 178

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 39/180 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNG----- 52
            +NK   I  D+E TGLD   D IIE+  +       T+           +  +      
Sbjct: 1   MQNKQNLIWIDLEMTGLDPDTDVIIEMATI------ITDSELNTLAEGPVIAVHQSDETL 54

Query: 53  RKNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGF 105
            K      + H   G+T    +   S +   ++  +F      E+++    ++   D  F
Sbjct: 55  AKMDEWNTRQHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGALLD 163
           +   +  +  +     R +D             + L  L  R+   +     S H AL D
Sbjct: 115 LYRHMPTL--ENWFHYRNLDV------------STLKELAARWSPELKFKKGSTHLALDD 160


>gi|240170995|ref|ZP_04749654.1| oligoribonuclease [Mycobacterium kansasii ATCC 12478]
          Length = 215

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 27/173 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA---LK 61
           +   +  D E TGL+  +D++IEI   V   D +       V +  +    S       +
Sbjct: 2   RDELVWIDCEMTGLNIASDKLIEIAVLVTDADLNILGDGVDVVIHADDDALSSMIDVVAE 61

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRI 113
           +H   G+ +E        ++  +   D+ NE     + A    ++   D  FI  ++  +
Sbjct: 62  MHTRSGLIEEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRSFIARDMPAL 121

Query: 114 NKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             D     R+ID  SI    RR +P            +G        H AL D
Sbjct: 122 --DAFLHYRMIDVSSIKELCRRWYPR---------IYFGQP-PKGLAHRALAD 162


>gi|322698002|gb|EFY89776.1| exonuclease [Metarhizium acridum CQMa 102]
          Length = 731

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 28/172 (16%)

Query: 8   RKI-VFDIET--TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           R++   D E   TG +     +  I  V        +      + P+ +  +    +  G
Sbjct: 335 REVLALDCEMCMTGENEF--ALTRISIVSWDGSVVLDE----LVKPD-KPITDYVTRFSG 387

Query: 65  ITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           IT+E L   P   +   I ++  D  + +    + H+ + D   I             P 
Sbjct: 388 ITEEML--APVTTTLRDIQAKLLDLLHPR-TILLGHSLESDTKAIQ---------IAHPF 435

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDV 170
            +  ++     + P  ++ L  L ++Y    I       H ++ D+    D+
Sbjct: 436 IVDTSMLYPHPRGPPLKSSLKYLAQKYLSREIQKGGAGGHNSIEDAKTCLDL 487


>gi|254444532|ref|ZP_05058008.1| exonuclease superfamily [Verrucomicrobiae bacterium DG1235]
 gi|198258840|gb|EDY83148.1| exonuclease superfamily [Verrucomicrobiae bacterium DG1235]
          Length = 223

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 45/157 (28%), Gaps = 18/157 (11%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            + +   V D E       +  I+E G V L             LC      S +    H
Sbjct: 5   WDDLPIHVIDFE----GGPHCGIVEFGVVTLKGSRI--ENVSTRLCLPKASISRKEQATH 58

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---------N 114
           GI++E +     F+  +  F      +     AH A  +   I A               
Sbjct: 59  GISNEAVSGLLPFAQEWDRFAHL--RETGPLAAHFASAENSMIKATFPYARRSENWIQPG 116

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGI 150
               D    IDT  + R          L  L  R+ +
Sbjct: 117 TKGTDWGPWIDTGYLYRNYGDDGSTLKLEDLVIRWEL 153


>gi|198438327|ref|XP_002132043.1| PREDICTED: similar to small fragment nuclease [Ciona intestinalis]
          Length = 205

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 22/169 (13%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG----RKNSPEALK 61
           + R +  D+E TGLD   D I+E+  +            +  +           +   ++
Sbjct: 31  RNRMVWVDLEMTGLDVNKDHILEMACLVTDGNLNVIAQEEDLVIHQSDEVLNNMNEWCIE 90

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRIN 114
            H   G+T+   K   + +        F  +    +      +    D  F++  + R  
Sbjct: 91  QHGRSGLTESVRKSMITLTQAEDIMLKFIQKHAPYKVCPLAGNTIHADKRFLDHYMPRF- 149

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            D L   RI+D  SI         N L              S H AL D
Sbjct: 150 MDHLH-YRIVDVSSIKELSKRWYPNVL---------PPPKGSSHRALED 188


>gi|323145829|gb|ADX32070.1| hypothetical protein [Pseudomonas phage P3_CHA]
 gi|323146015|gb|ADX32255.1| hypothetical protein [Pseudomonas phage PAK_P3]
          Length = 305

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 94  WIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
            +AHN + FD+  INA L + +  P  P +IIDT  IA++      N L SL     
Sbjct: 131 VVAHNGRKFDLPTINAHLVKHDIMPPSPYKIIDTCDIAKKVFKFPSNSLKSLAIFLK 187


>gi|320654041|gb|EFX22115.1| putative exonuclease [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
          Length = 575

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 45/195 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAV--------------ELLD----YSKTNR-TFQVFLCPNG 52
            D+ET G +  +  II IGA+              + +D        +R T + +L  + 
Sbjct: 397 IDLETMGKNP-DAPIISIGAIFFDPQTGDMGPEFSKTIDLDTAGGVIDRDTIKWWLKQSR 455

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINA 108
              S               D+        +  +F +E + E+  H       FD   +  
Sbjct: 456 EAQSAIMT-----------DEIPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILRR 504

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             +R       P R  +   +          D ++   R  I      +H AL D+   +
Sbjct: 505 SYERQGIP--CPWRYYNDRDVRTIVELGKAVDFDA---RTAIPFEGE-RHNALDDARYQA 558

Query: 169 D----VYIKMMVGGS 179
                ++ K++   +
Sbjct: 559 KYVSTIWQKLLPNQA 573


>gi|85711864|ref|ZP_01042919.1| oligoribonuclease [Idiomarina baltica OS145]
 gi|85694261|gb|EAQ32204.1| oligoribonuclease [Idiomarina baltica OS145]
          Length = 183

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 61/181 (33%), Gaps = 34/181 (18%)

Query: 1   MIRKNK-MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M  + K  R I  D+E TGL+ + D +IE+  +                 P    + P++
Sbjct: 1   MSEEQKSQRLIWIDLEMTGLNPEYDHVIEVATIVTDADLNILAE-----GPTIAIHQPQS 55

Query: 60  ---------LKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDV 103
                    +K H   G+ D   K + S      E  +F +       +    ++   D 
Sbjct: 56  NLDKMDDWNVKTHTGSGLVDRVKKSQYSEQDAVRETIEFLSHYVEPNTSPMCGNSICQDR 115

Query: 104 GFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
            F+   +  +       +  + T+  +A+R  P + N               +  H AL 
Sbjct: 116 RFLAQHMPELEAFFHYRNLDVSTIKELAKRWKPEAMNG-----------FKKKGAHEALA 164

Query: 163 D 163
           D
Sbjct: 165 D 165


>gi|163754663|ref|ZP_02161785.1| hypothetical protein KAOT1_17248 [Kordia algicida OT-1]
 gi|161325604|gb|EDP96931.1| hypothetical protein KAOT1_17248 [Kordia algicida OT-1]
          Length = 169

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 16/168 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIE+ G    +  +I  GAV +    K +RTF   L P   +  P AL + G + E   
Sbjct: 2   VDIESDGPIPGDYSMICFGAVLV--DEKLDRTFYGALKPISERFDPTALSISGFSREETL 59

Query: 72  DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR-INKDPL-DPSRIIDT 126
           +     ++ ++F  +  E +     +I+ N  FD  FI       I ++P    SR +  
Sbjct: 60  EFDDPKTVMNDFKVWIEENSKGKPVFISDNNGFDWMFICWYFHHFIGENPFGYSSRRLAD 119

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           L     K        ++  K   +  +  + H  + D+   ++V + M
Sbjct: 120 LYCGMEK--------DTFAKWKHLRKTVHT-HNPVDDAMGNAEVLLMM 158


>gi|300119688|ref|ZP_07057228.1| sporulation inhibitor KapD [Bacillus cereus SJ1]
 gi|298722916|gb|EFI63818.1| sporulation inhibitor KapD [Bacillus cereus SJ1]
          Length = 158

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 6/122 (4%)

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K  GI  E +    SF  +  +  ++  +     +      D+  +    ++   D    
Sbjct: 15  KFLGIKQEVVDKGISFLELVEKLAEYEKKCKPTIVTW-GNMDMKVLKHNCEKAEVDFPFL 73

Query: 121 SRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            +  D     ++     RN   L    + YG  +     H AL D+    +++ K++   
Sbjct: 74  GQCRDLSLEYKKFF-GERNQTGLWKAIEAYG-KVGTGKHHCALDDAMTTYNIF-KLVEKD 130

Query: 179 SQ 180
            +
Sbjct: 131 KE 132


>gi|257486438|ref|ZP_05640479.1| exonuclease I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 127

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 16/121 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--------NGRKNSPEALKLHG 64
           D ETTG++ +NDR +++  +       T+        P        +     P A  + G
Sbjct: 9   DYETTGINPRNDRALQMAGIR------TDTELNEIAPPVNLHCQLSDDILPHPVACMITG 62

Query: 65  ITDEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122
           IT   L +K        +      +        +N  +FD         R   DP     
Sbjct: 63  ITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREW 122

Query: 123 I 123
            
Sbjct: 123 Q 123


>gi|260802602|ref|XP_002596181.1| hypothetical protein BRAFLDRAFT_118023 [Branchiostoma floridae]
 gi|229281435|gb|EEN52193.1| hypothetical protein BRAFLDRAFT_118023 [Branchiostoma floridae]
          Length = 703

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
          + FD E    +     IIE+ AV+          F   +  + R  S    + +G+T   
Sbjct: 15 LFFDCEAAAGNVFRHDIIEV-AVKCQPDLHPTAEFDSLIHTDQRIGSFG--QENGLTARV 71

Query: 70 LKDKPSFSSIFSEFWDFFNE 89
          L+ +P+F  +  +   + + 
Sbjct: 72 LEGQPTFPEVLDQLLAWCSG 91


>gi|153954174|ref|YP_001394939.1| hypothetical protein CKL_1549 [Clostridium kluyveri DSM 555]
 gi|219854783|ref|YP_002471905.1| hypothetical protein CKR_1440 [Clostridium kluyveri NBRC 12016]
 gi|146347055|gb|EDK33591.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219568507|dbj|BAH06491.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 265

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 53/147 (36%), Gaps = 34/147 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           FDIETTG D + D II I     +D +K    + F                       + 
Sbjct: 28  FDIETTGFDRECDNIILISLGRFIDKNKLSIKQYF----------------------ADT 65

Query: 70  LKDKPSFSSIFSEF-WDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127
           L+D    S +   F  D       +W ++N   FD  F+   + R N     P   +D  
Sbjct: 66  LQD---ESEVLYNFGMDILKYD--KWCSYNGIAFDEPFVKERMHRNNIYFEFPKYHVDLY 120

Query: 128 SIARRKHP---SSRNDLNSLCKRYGIT 151
            + R  +      R +L ++ K  GI 
Sbjct: 121 RLIRPYYKQLGMERCNLKTVEKYLGIN 147


>gi|328791793|ref|XP_624063.2| PREDICTED: probable oligoribonuclease-like [Apis mellifera]
          Length = 144

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 12/125 (9%)

Query: 2   IRKNKMRKIV-FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--- 56
           +  NK   IV  D E TGL  + D I+EI   +   D +  +  F + +           
Sbjct: 1   MVYNKHNCIVWIDTELTGLQIETDTILEIACLITDEDLNIVSEEFNIVINQPDVVLEHMN 60

Query: 57  PEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAE 109
              +  H   G+  E    K +         +F  +    Q      +    D  F+   
Sbjct: 61  EWCMNFHTKSGLVQESKYSKITLKVAEEMLLNFLKKYIPSQTCPLAGNTIYMDRLFLLKH 120

Query: 110 LQRIN 114
           +  +N
Sbjct: 121 MPLVN 125


>gi|325171157|ref|YP_004251132.1| hypothetical protein ViPhICP1_gp191 [Vibrio phage ICP1]
 gi|323512552|gb|ADX88007.1| conserved hypothetical protein [Vibrio phage ICP1]
 gi|323512778|gb|ADX88232.1| gp35 [Vibrio phage ICP1_2006_D]
 gi|323513006|gb|ADX88459.1| gp35 [Vibrio phage ICP1_2006_C]
 gi|323513231|gb|ADX88683.1| hypothetical protein TUST1-159_00915 [Vibrio phage ICP1_2006_B]
 gi|323513458|gb|ADX88909.1| hypothetical protein TUST1-17_00915 [Vibrio phage ICP1_2006_A]
 gi|323513689|gb|ADX89139.1| gp35 [Vibrio phage ICP1_2005_A]
 gi|323513920|gb|ADX89369.1| gp35 [Vibrio phage ICP1_2001_A]
 gi|323514148|gb|ADX89596.1| hypothetical protein TUST1-10_00920 [Vibrio phage ICP1_2004_A]
          Length = 337

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 68  EFLKDKPSFSS---IFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRI 123
             LK K        + SE W+  N+ +   +  N  +FD+  +NA L      P  P + 
Sbjct: 129 NDLKGKVDTEDDYQLLSELWELMNQAD-IVVGQNHRRFDIKRLNARLIMNGFRPYSPVKT 187

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
            DTL IA+RK   + N L  +  +  +    + KHG
Sbjct: 188 EDTLDIAKRKFGFTSNKLEWMTDKLCVEF-KKQKHG 222


>gi|330466087|ref|YP_004403830.1| oligoribonuclease [Verrucosispora maris AB-18-032]
 gi|328809058|gb|AEB43230.1| oligoribonuclease [Verrucosispora maris AB-18-032]
          Length = 185

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 27/162 (16%)

Query: 17  TGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS--PEALK-LH---GITDEF 69
           TGLD  +D++IE+ A+    D +       V +  +       PE ++ +H   G+T+E 
Sbjct: 2   TGLDLGSDKLIEVAALVTDPDLNVLGDGVDVVIHADDAALDAMPEIVRTMHGKSGLTEEV 61

Query: 70  LKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            +   + +       D+      + + A    ++   D GFI  ++ R+  D     R+I
Sbjct: 62  RRSTVTLAEAEDMVLDYVSRHVKDPRTAPLCGNSIATDRGFIARDMPRL--DAHLHYRMI 119

Query: 125 DTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           D  SI    RR +P            +G        H AL D
Sbjct: 120 DVSSIKELCRRWYPRV---------YFGQP-QKGLAHRALAD 151


>gi|158258625|dbj|BAF85283.1| unnamed protein product [Homo sapiens]
          Length = 598

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 23/141 (16%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNE---------------------QNAEWIAHN 98
           ++L GI    + +        S+F  + ++                     +   ++  +
Sbjct: 1   MELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWS 60

Query: 99  AKFDVGFINAELQRINK-DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK 157
                  +  E +R     P+  +  ID  +  +  +      L+   +  GI  S R  
Sbjct: 61  DWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGRE- 119

Query: 158 HGALLDSHLLSDVYIKMMVGG 178
           H  L DS   + +  KM+  G
Sbjct: 120 HSGLDDSRNTALLAWKMIRDG 140


>gi|125531953|gb|EAY78518.1| hypothetical protein OsI_33613 [Oryza sativa Indica Group]
          Length = 647

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 52/180 (28%), Gaps = 23/180 (12%)

Query: 75  SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK- 133
            F         F + ++  W+A+++ +D+GF+   LQ   +            +  RR  
Sbjct: 341 RFYEGLLRHLPFGDGRSVTWLAYHSDYDLGFLLRLLQCGGRRRGGGDLPRQLAAFLRRLR 400

Query: 134 --HP---------------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
              P                    L  L +  GI  +  + H A  D+ L    + K+  
Sbjct: 401 ENFPAFYDVRVIRQMLEDHGFSGKLTGLAEHLGIRRTGGAAHHAGSDALLTLSCFFKIFR 460

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKR-----DKPLFTRITKEELDEHDKTIQTL 231
             S                 ++    I   +             +  E LDE  + I  L
Sbjct: 461 SLSGQQLHQLDARRGLLAGLEEWNMAIKCARHIDDHTRNIKVIEVVAENLDEEARRIGEL 520


>gi|323336602|gb|EGA77868.1| Rex2p [Saccharomyces cerevisiae Vin13]
          Length = 208

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 61/167 (36%), Gaps = 30/167 (17%)

Query: 17  TGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLC--PNGR-KNSPEALKLH-- 63
           TGLD  NDRIIEI  +    +         + +  ++  +   P    K +   ++ H  
Sbjct: 2   TGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMBKMNEWCIEHHGN 61

Query: 64  -GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            G+T + L  + + + +  E  ++      ++       ++   D  F+  E  ++    
Sbjct: 62  SGLTAKVLASEKTLAQVEDELLEYIQXYIPDKNVGVLAGNSVHMDRLFMVREFPKVIDHL 121

Query: 118 LDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 + + + +ARR +P+ +                 + H A  D
Sbjct: 122 FYRIVDVSSIMEVARRHNPALQAR----------NPKKEAAHTAYSD 158


>gi|312068388|ref|XP_003137191.1| exonuclease [Loa loa]
 gi|307767647|gb|EFO26881.1| exonuclease [Loa loa]
          Length = 641

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 59/199 (29%), Gaps = 16/199 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D E    ++    +  I  V        +      + P  R       K  GIT++ L
Sbjct: 241 AVDCEMCTTETGESELTRISIVNECYEVLLD----TLVKPRNRIVD-YVTKYSGITEKML 295

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++         +        +A  + H  + D   +          P      +      
Sbjct: 296 ENVNVRVEDVQKALSHILPNDAILVGHTLECDFNAMRITH------PYCVDISLCLNLSG 349

Query: 131 RRKHPSSRNDLNSLCK-RYGITISHRSKHGALLDSHLLSDVY-IKMMVGGSQINFGFKTN 188
           + +    R+ L +L +      I   + H ++ D+ +   +   K+  G    N     +
Sbjct: 350 KDR---QRSSLKTLARIFLNEEIQGENGHCSVDDAVITMRLLKYKLSHGVHFGNVALGWS 406

Query: 189 EDRFFKEEKKTVPNISLLK 207
            D + +E   T     + K
Sbjct: 407 FDDWARENGLTNSGARISK 425


>gi|226952746|ref|ZP_03823210.1| DNA exonuclease X [Acinetobacter sp. ATCC 27244]
 gi|226836537|gb|EEH68920.1| DNA exonuclease X [Acinetobacter sp. ATCC 27244]
          Length = 176

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 67/173 (38%), Gaps = 27/173 (15%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + +H I +  L D+P     ++EF      +    I HN  +D+  I     R   +   
Sbjct: 1   MAVHHILESDLVDRP----FYNEFQ--LPTETTYIIGHNVDYDIAAI----ARCGVET-S 49

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISH-------RSKHGALLDSHLLSDVY 171
             + I TL++AR   P +  +++++L   Y I+          +  H A  D  L +++ 
Sbjct: 50  HLKPICTLALARHVWPDAEAHNISALI--YLISKGSDKAREMLKGAHRADADIILTANIL 107

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDE 223
           + ++          +  E  +   E+  +P +I+  K        +  + +  
Sbjct: 108 MHIIH-----QLDIQNIEQLYIASEEARIPKSITFGKHKGTAIQDLPTDYVQW 155


>gi|124022578|ref|YP_001016885.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
 gi|123962864|gb|ABM77620.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
          Length = 986

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 54/155 (34%), Gaps = 19/155 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  +++++ +  D ETT L+     ++ +G                ++ P G     E  
Sbjct: 379 MGYRDRLKPVALDTETTALNPFCAELVGLGVCWGEGLQDL-----AYI-PIGHHPPAE-- 430

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
               + +     +    ++      +    +      NAK+D   +      +       
Sbjct: 431 ----LLEAEAACQLPLEAVLKAIAPWLASNDHPKALQNAKYDRLILLRHGLALEGV---- 482

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKR-YGITISH 154
             ++DTL     +  ++++ L  + +R + IT + 
Sbjct: 483 --VMDTLLADYLRDAAAKHGLEVMAEREFKITPTG 515


>gi|323332512|gb|EGA73920.1| Rex2p [Saccharomyces cerevisiae AWRI796]
          Length = 208

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 61/167 (36%), Gaps = 30/167 (17%)

Query: 17  TGLDSKNDRIIEIGAVELLDY--------SKTNRTFQVFLC--PNGR-KNSPEALKLH-- 63
           TGLD  NDRIIEI  +    +         + +  ++  +   P    K +   ++ H  
Sbjct: 2   TGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCIEHHGN 61

Query: 64  -GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            G+T + L  + + + +  E  ++      ++       ++   D  F+  E  ++    
Sbjct: 62  SGLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRLFMVREFPKVIDHL 121

Query: 118 LDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 + + + +ARR +P+ +                 + H A  D
Sbjct: 122 FYRIVDVSSIMEVARRHNPALQAR----------NPKKEAAHTAYSD 158


>gi|296087401|emb|CBI33775.3| unnamed protein product [Vitis vinifera]
          Length = 360

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 77/239 (32%), Gaps = 43/239 (17%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV----FLCPNGRKNSP 57
            R N M  +  D E          + E G   L+     +R  QV     + P+      
Sbjct: 139 TRSNAM--LAVDCEMV--------LCEDGTEGLVRVCVVDRNLQVKLNELVKPHKAVVDY 188

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDF------FNEQNAEWIAHNAKFDVGFINAELQ 111
              ++ G++         F    S   D            A  + H+   D+  +     
Sbjct: 189 R-TEITGVS------AKDFDETTSSLVDIQRSMKKLLSHGAVLVGHSLHNDLKALK---- 237

Query: 112 RINKDPLDPSRIIDTLSIARRKHP--SSRNDLNSLCKR-YGITISHRSK-HGALLDSHLL 167
                 LD +R+IDT  I + ++   + R  LN+LCK   G  +  +   H  L D+   
Sbjct: 238 ------LDHARVIDTAFIYKYENQPINRRPSLNNLCKSILGYEVRQKDAPHNCLDDASAA 291

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD-EHD 225
             + +  +  G      F  +ED    E  K + +            RI   E   EH 
Sbjct: 292 MKLVLAKLEQGLDDAIPF-VHEDVPENEMAKLLLHRIPTDVPIEELNRIIPGEFTMEHQ 349


>gi|302840032|ref|XP_002951572.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f.
           nagariensis]
 gi|300263181|gb|EFJ47383.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f.
           nagariensis]
          Length = 1461

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---ELQRINKDPLDPSRIIDT 126
           ++ KP    I  EF  FF +++ + + HN  FD   +            D L  +R+ D 
Sbjct: 748 VRLKPH-HPILDEFKRFFEDESVKKVWHNYGFDRHVLENMGICCAGFGGDTLHMARLADA 806

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
               RR +      L++L   + I + H   H A
Sbjct: 807 SRSGRRTY-----GLDNLTADHNI-MRHFVPHRA 834


>gi|256079041|ref|XP_002575799.1| hypothetical protein [Schistosoma mansoni]
 gi|238661049|emb|CAZ32034.1| expressed protein [Schistosoma mansoni]
          Length = 301

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 76/224 (33%), Gaps = 61/224 (27%)

Query: 10  IVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQ-------VFLCPNGRKNSPEAL 60
           ++FD+ETTGL S   N  I E+  +    +S  N T +              R  S  A 
Sbjct: 18  VLFDVETTGLPSANFNPEITELCMLACSRFSLENATAEPRVENKLTLCFNPTRTISSIAS 77

Query: 61  KLHGITDEFLKDKPSFSS-IFSEFWDFFNEQNAE--WIAHNA-KFDVGFINAELQRINKD 116
           K+ G+  + L  +  F +        F N  ++   +IAHN  +FD   + A++  +   
Sbjct: 78  KISGLNSDNLFHQKDFDASAVDLIQLFLNRLDSPVCFIAHNGLRFDFPLLRAQIMSVKGK 137

Query: 117 PLD-------PSRIIDTLSIAR----------------------------------RKHP 135
             +       P    DTL + R                                   K P
Sbjct: 138 DYNLNDSTNAPIICTDTLPLFREFASQLSGVNSDDSGFISTDDQSSTPVPISHSSPIKLP 197

Query: 136 SSRN----DLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKM 174
           ++ N     L  + +R +G    H+  H A  D   +  +   +
Sbjct: 198 TTTNKHSFHLGDIHERVFG--EKHKHAHSAEGDCRAMLRLVQYL 239


>gi|224141305|ref|XP_002324015.1| predicted protein [Populus trichocarpa]
 gi|222867017|gb|EEF04148.1| predicted protein [Populus trichocarpa]
          Length = 324

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 50/168 (29%), Gaps = 32/168 (19%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSE 82
           +D  I++ A   L     N  F  ++ P     +    +  GI  E+L+D      +  +
Sbjct: 121 SDGSIDLCARVCLIDENENIIFHTYVKPPI-PVTNYRYETTGIRPEYLRDATPLRQVQKK 179

Query: 83  FWDFF------------NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             DF               +    + H           +L R+  +      + DT    
Sbjct: 180 IQDFLCNGEPTWKIRPRGGKARILVGH-----------DLDRLQLEY-PAVMMRDTAKYP 227

Query: 131 RRKHPSS-RNDLNSLCKR---YGITISHRSKHGALLDSHLLSDVYIKM 174
                S   N L  L +    Y I    +       D      +YI+M
Sbjct: 228 PLMKTSKLSNSLKYLTQAYLGYDIQTGMQDP---YEDCVATMRLYIRM 272


>gi|41408418|ref|NP_961254.1| oligoribonuclease [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|48428193|sp|P61651|ORN_MYCPA RecName: Full=Oligoribonuclease
 gi|41396774|gb|AAS04637.1| hypothetical protein MAP_2320 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 215

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 27/173 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLH- 63
           +   +  D E TGLD  +D++IEI A V   + +       V +  +    +     +  
Sbjct: 2   RDELVWIDCEMTGLDLGSDKLIEIAALVTDAELNVLGDGVDVVIHADDAALAAMGEVVTE 61

Query: 64  -----GITDE----FLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRI 113
                G+ DE     +    +   +           + A    ++   D  FI  ++  +
Sbjct: 62  MHSRSGLIDEVKASTVDLATAEEMVLDYIRTHVKAPKTAPLAGNSIATDRAFIVRDMPAL 121

Query: 114 NKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             D     R+ID  SI    RR +P            +G  +   + H AL D
Sbjct: 122 --DAYLHYRMIDVSSIKELCRRWYPR---------IYFGQPVKGLT-HRALAD 162


>gi|308456231|ref|XP_003090574.1| CRE-ERI-1 protein [Caenorhabditis remanei]
 gi|308262483|gb|EFP06436.1| CRE-ERI-1 protein [Caenorhabditis remanei]
          Length = 584

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 62/201 (30%), Gaps = 37/201 (18%)

Query: 10  IVFDIETTGLDSKND---RIIEIGAVELLDYS-KTNRTFQVFLCP-NGRKNSPEALKLHG 64
           I  D E T ++   D    IIE+ AV +     K    F+ ++ P    K S   ++   
Sbjct: 147 IAADFECTCVEVIYDYPHEIIELPAVLIDVREMKIVSEFRSYVRPVKNPKLSEFCIQFTS 206

Query: 65  ----------------ITDEFLKDKPSFSSIFSEFWDF-----FNEQNAEWIAHNAKFDV 103
                           I  E + + P F         +       E+N  + A       
Sbjct: 207 RWPPLLVPSLIDFLPEIAQETVDEAPYFREALDRLIQWMRHFGLGEKNTRF-AFVTDGPH 265

Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDL---------NSLCKRYGITISH 154
                   +     +    +       ++      N L          ++ +R  ++   
Sbjct: 266 DMWKFMQFQCLLSNIRMPHMFRNFINIKKTFKEKFNGLVKGNGKSGIENMLERLELSFIG 325

Query: 155 RSKHGALLDSHLLSDVYIKMM 175
            +KH  L D+  ++ + I+MM
Sbjct: 326 -NKHSGLDDARNIAQIAIQMM 345


>gi|291532958|emb|CBL06071.1| DNA polymerase III, alpha subunit (gram-positive type) [Megamonas
           hypermegale ART12/1]
          Length = 97

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 103 VGFINAELQRINKDPLDP-SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160
           +  +N  L + N  P+D  +   DTL + RR +P+   + L  L   +      +S H +
Sbjct: 1   MDILNQNLLKHNLKPVDFSNINFDTLDLVRRFYPNLPNHKLEFLSNHF--QFETKSNHNS 58

Query: 161 LLDSHLLSDVYIKMMV 176
           L D     ++  K++ 
Sbjct: 59  LDDVFATWELLHKLLE 74


>gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium]
          Length = 942

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 32/148 (21%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +   N+  +  FD ETT L++    I+ +            ++F  +  P          
Sbjct: 362 LTLLNQQSEFCFDSETTSLNTLEAEIVGLSFA--------VKSFSAYYVPFPANREEAQA 413

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K++                   F   F +     I  N K+D   +       N      
Sbjct: 414 KIN------------------AFRSLFEDDTKTLIGQNIKYDFQVLK------NYGIEIK 449

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRY 148
           +++ DT+       P  R++++ L + Y
Sbjct: 450 NKLFDTMVAHFLIMPEMRHNMDILAQTY 477


>gi|145589305|ref|YP_001155902.1| exonuclease, RNase T and DNA polymerase III [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047711|gb|ABP34338.1| Exonuclease, RNase T and DNA polymerase III [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 201

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 45/195 (23%)

Query: 9   KIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQV---FLCPNGRKNSPEA 59
               D+E   L++  D      +II+IG      +   N++      FL P         
Sbjct: 7   YFALDLE---LNNSQDNSTVNPKIIQIGLAVGNYHDYVNQSLSSYKWFLDPK-EPIFEFI 62

Query: 60  LKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINAELQRIN 114
            +L GI ++ + D          E  +    +N      N       D   +  E +   
Sbjct: 63  TQLTGICNQDISDYSVPHEQAAKEIGEIITTRNCFV---NPITWGGGDSLELKTEFKDRG 119

Query: 115 KD-PLDPSRIIDTLSIARRKHPSSRNDLNSLC-------------KRYGITISHRSKHGA 160
              P    R ID  +            L+ L                + +     S H A
Sbjct: 120 ISFPYFGRRWIDVKTW---------YSLHMLAMGKKPSGGLSSGLGSFKLQFEG-SPHRA 169

Query: 161 LLDSHLLSDVYIKMM 175
            +D+     ++ +++
Sbjct: 170 DVDALNTLRLFFEIL 184


>gi|330899885|gb|EGH31304.1| oligoribonuclease [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 178

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 39/180 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNG----- 52
            +NK   I  D+E TGLD   D IIE+  +       T+           +  +      
Sbjct: 1   MQNKQNLIWIDLEMTGLDPDTDVIIEMATI------ITDSELNTLAEGPVIAVHQSDETL 54

Query: 53  RKNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGF 105
            K      + H   G+T    +   S +   ++  +F      E+++    ++   D  F
Sbjct: 55  AKMDEWNTRQHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGALLD 163
           +   +  +  +     R +D             + L  L  R+   +     S H AL D
Sbjct: 115 LYRHMPTL--ENWFHYRNLDV------------STLKELAARWSPELKFKKGSTHLALDD 160


>gi|262371112|ref|ZP_06064434.1| oligoribonuclease [Acinetobacter johnsonii SH046]
 gi|262313998|gb|EEY95043.1| oligoribonuclease [Acinetobacter johnsonii SH046]
          Length = 184

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 23/175 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRK---NS 56
           M      R I  D+E TGLD+ ND+IIE+  +   D         V  +    R      
Sbjct: 1   MSSTADTRLIWIDLEMTGLDTDNDQIIEVATIVTDDNLNILAEGPVLAVHQPDRVLNAMD 60

Query: 57  PEALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
               + HG       +    L  + +          + N +++    ++   D  F++  
Sbjct: 61  EWNTRQHGQSGLIERVRRSKLTAQDAEQQTLEFLKKWVNPKSSPMCGNSICQDRRFLHRL 120

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + +     +  + ++  +A+R  P   + L              + H A+ D
Sbjct: 121 MPEMEQYFHYRNLDVSSVKELAKRWRPEIMSGLKK-----------NASHLAMDD 164


>gi|212696208|ref|ZP_03304336.1| hypothetical protein ANHYDRO_00744 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676837|gb|EEB36444.1| hypothetical protein ANHYDRO_00744 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 238

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 29/152 (19%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K  + + DIETTGLD   D ++ +G +              ++     KN  E ++L  I
Sbjct: 14  KKDECILDIETTGLDPNTDSLVVLGLIYFNKDK-------FYIDQYFAKNDKEEIRLLKI 66

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDP-LDPSRI 123
             E                     +N + I +N + FD+ F+N  L + N+      ++ 
Sbjct: 67  YKE-------------------KIKNRKLITYNGEVFDLPFLNIRLIKNNEKAVFPENKD 107

Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISH 154
           I  +  A+RK     +  L  + KR+GI  + 
Sbjct: 108 IYKIIKAKRKLIEFNSMKLIDIEKRFGIERND 139


>gi|307110015|gb|EFN58252.1| hypothetical protein CHLNCDRAFT_12089 [Chlorella variabilis]
          Length = 171

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 37/172 (21%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPE------ 58
           K   I  D+E TGLD ++D+I++I  +       T+   +  +  P    + PE      
Sbjct: 5   KQPLIWIDLEMTGLDVESDQILQIAVIC------TDGAMEEVVEGPELAIHQPEEVLQTM 58

Query: 59  ---ALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
               ++ H   G+T        S +    +  +F          ++   D+ F+   + R
Sbjct: 59  NEWCVEQHGKSGLTQACRDSTTSLAEAEQQVLEFIA-------GNSVHVDLAFMRKHMPR 111

Query: 113 INKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +          + T+  + RR  P                   ++ H AL D
Sbjct: 112 LVDHLSYRIVDVSTVGELCRRWFPREHMR----------APKKKNTHTALSD 153


>gi|156932395|ref|YP_001436311.1| oligoribonuclease [Cronobacter sakazakii ATCC BAA-894]
 gi|156530649|gb|ABU75475.1| hypothetical protein ESA_00171 [Cronobacter sakazakii ATCC BAA-894]
          Length = 185

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 58/190 (30%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 5   MSANENNLIWIDLEMTGLDPRQDRIIEIA---------------TLVTDANLNILAEGPV 49

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 50  IAVHQ-SDEQLALMDDWNVRTHTASGLVDRVKASTMGDREAELATIEFLKQWVPAGKSPI 108

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+ L K+      
Sbjct: 109 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPE---VLDGLKKQ------ 159

Query: 154 HRSKHGALLD 163
             + H AL D
Sbjct: 160 --NTHQALDD 167


>gi|328724623|ref|XP_001951563.2| PREDICTED: RNA exonuclease 4-like [Acyrthosiphon pisum]
          Length = 243

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 54/173 (31%), Gaps = 17/173 (9%)

Query: 3   RKNKMRKIVFDIETTGLDS--KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            K  +  +  D E  G+    + + +  +  V     +     +  F+ P          
Sbjct: 53  EKKDIEVVAIDCEMVGIHPDGQGNMLARVSIVNSKGETI----YDKFVKPTATVTDYR-T 107

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            + GI  + ++    F  +  E       +N   + H  + D+  +          P   
Sbjct: 108 PVSGIRPKDIEHGEVFVKVKKEVTQIL--KNKLLVGHALEHDLRVLRISH------PKHM 159

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYI 172
            R   T    ++        L  L   + G +I    +H ++ D+     +Y+
Sbjct: 160 IRDTSTYWQFKQLTEGRTPGLKRLTLHFLGASI-QEGEHSSVQDAKAALQLYM 211


>gi|321474623|gb|EFX85588.1| hypothetical protein DAPPUDRAFT_237744 [Daphnia pulex]
          Length = 221

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 25/163 (15%)

Query: 11  VFDIE---TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             D E   TTG       +  I  +   DY      ++  + P+         +  GIT+
Sbjct: 77  ALDCEMCYTTG----GGELTRIAVISS-DYKTV---YETLVMPDN-PILDYNTRCSGITE 127

Query: 68  EFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           + L D K +   + +   +  + +    I H+   D+  +   +            +IDT
Sbjct: 128 DDLVDVKTTLKDVQAFLLNLLSSK-TILIGHDLDGDLRALGVMI---------HDTVIDT 177

Query: 127 -LSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLL 167
            +     + P  R  L +LC+ Y   +I +   H    D+   
Sbjct: 178 SVIFPHSQGPPFRRALKTLCQEYLKKSIRNGGVHNCSEDAIAC 220


>gi|333029493|ref|ZP_08457554.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
 gi|332740090|gb|EGJ70572.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
          Length = 928

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 32/143 (22%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
             ++I  D ETTGL++    I+ I      +        + +  P  +       +L+ I
Sbjct: 354 PFKEIALDTETTGLEAMEAEIVGISFSVKKN--------EAYYIPFPKDQEETKKRLN-I 404

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
               L++K S                   I  N K+D+  +       N       ++ D
Sbjct: 405 IKPLLENKKSLK-----------------IGQNIKYDLLILK------NYGIEVVGKLFD 441

Query: 126 TLSIARRKHPSSRNDLNSLCKRY 148
           T+       P  R++++ L + Y
Sbjct: 442 TMIAHYVVQPELRHNMDYLAEIY 464


>gi|297815542|ref|XP_002875654.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321492|gb|EFH51913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 266

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 70/207 (33%), Gaps = 44/207 (21%)

Query: 8   RKIVFDIETTG-------------------LDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           R I  D E  G                         ++I++G        +   T+++  
Sbjct: 12  RFIAIDTEFPGSLRQTSQDATDDERYNDMSFSVDRTKLIQLGLTLFDINGRIGGTWEINF 71

Query: 49  CPNGRKN--SPEALKL---HG-----ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98
              G  +  + ++++    +G     I +E +  K  FS +   FW     +N  W+  +
Sbjct: 72  SDFGVDDARNEKSIEFLRRNGLDLRKIREEGIGIKGFFSEL---FWILKKTRNITWVTFH 128

Query: 99  AKFDVGFINAELQRINKDPLDP----------SRIIDTLSIA-RRKHPSSRNDLNSLCKR 147
             +D+ ++       +                  + D   +A R    SSR  L SL   
Sbjct: 129 GYYDIAYLLKCFTGEDLPFTSERFSKAVARILGSVYDLKVMAGRCLGLSSRLGLESLAHE 188

Query: 148 YGITISHRSKHGALLDSHLLSDVYIKM 174
            G+     + H A  DS L + V+ KM
Sbjct: 189 LGL-NRVGTAHHAGSDSELTARVFAKM 214


>gi|197935875|ref|YP_002213711.1| hypothetical protein RSB1_gp22 [Ralstonia phage RSB1]
 gi|197927038|dbj|BAG70380.1| hypothetical protein [Ralstonia phage RSB1]
          Length = 264

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++K     I        +E +   I  N  KFD   INA        P  P R++DT+ +
Sbjct: 61  RNKRDDKRIVKRIHKLLDEAD-IVIGQNVQKFDRRKINARFIMNGLTPPSPYRVVDTMLM 119

Query: 130 ARRKHPSSRNDLNSLCKRY 148
           AR+    + N L  L ++ 
Sbjct: 120 ARKTFGFTSNKLEWLSEKL 138


>gi|15609648|ref|NP_217027.1| oligoribonuclease [Mycobacterium tuberculosis H37Rv]
 gi|15842039|ref|NP_337076.1| oligoribonuclease [Mycobacterium tuberculosis CDC1551]
 gi|31793691|ref|NP_856184.1| oligoribonuclease [Mycobacterium bovis AF2122/97]
 gi|121638393|ref|YP_978617.1| oligoribonuclease [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148662347|ref|YP_001283870.1| oligoribonuclease [Mycobacterium tuberculosis H37Ra]
 gi|148823708|ref|YP_001288462.1| oligoribonuclease [Mycobacterium tuberculosis F11]
 gi|167966612|ref|ZP_02548889.1| oligoribonuclease [Mycobacterium tuberculosis H37Ra]
 gi|215404448|ref|ZP_03416629.1| oligoribonuclease [Mycobacterium tuberculosis 02_1987]
 gi|215412277|ref|ZP_03421037.1| oligoribonuclease [Mycobacterium tuberculosis 94_M4241A]
 gi|215427894|ref|ZP_03425813.1| oligoribonuclease [Mycobacterium tuberculosis T92]
 gi|215431457|ref|ZP_03429376.1| oligoribonuclease [Mycobacterium tuberculosis EAS054]
 gi|215446761|ref|ZP_03433513.1| oligoribonuclease [Mycobacterium tuberculosis T85]
 gi|218754244|ref|ZP_03533040.1| oligoribonuclease [Mycobacterium tuberculosis GM 1503]
 gi|219558511|ref|ZP_03537587.1| oligoribonuclease [Mycobacterium tuberculosis T17]
 gi|224990887|ref|YP_002645574.1| oligoribonuclease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798409|ref|YP_003031410.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 1435]
 gi|254232640|ref|ZP_04925967.1| oligoribonuclease orn [Mycobacterium tuberculosis C]
 gi|254366813|ref|ZP_04982855.1| oligoribonuclease orn [Mycobacterium tuberculosis str. Haarlem]
 gi|254551558|ref|ZP_05142005.1| oligoribonuclease [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260187518|ref|ZP_05764992.1| oligoribonuclease [Mycobacterium tuberculosis CPHL_A]
 gi|260201636|ref|ZP_05769127.1| oligoribonuclease [Mycobacterium tuberculosis T46]
 gi|260205826|ref|ZP_05773317.1| oligoribonuclease [Mycobacterium tuberculosis K85]
 gi|289444042|ref|ZP_06433786.1| oligoribonuclease orn [Mycobacterium tuberculosis T46]
 gi|289448156|ref|ZP_06437900.1| oligoribonuclease orn [Mycobacterium tuberculosis CPHL_A]
 gi|289553697|ref|ZP_06442907.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 605]
 gi|289570671|ref|ZP_06450898.1| oligoribonuclease orn [Mycobacterium tuberculosis T17]
 gi|289575216|ref|ZP_06455443.1| oligoribonuclease orn [Mycobacterium tuberculosis K85]
 gi|289746293|ref|ZP_06505671.1| oligoribonuclease [Mycobacterium tuberculosis 02_1987]
 gi|289751120|ref|ZP_06510498.1| oligoribonuclease orn [Mycobacterium tuberculosis T92]
 gi|289754620|ref|ZP_06513998.1| oligoribonuclease orn [Mycobacterium tuberculosis EAS054]
 gi|289758643|ref|ZP_06518021.1| oligoribonuclease orn [Mycobacterium tuberculosis T85]
 gi|289762679|ref|ZP_06522057.1| oligoribonuclease orn [Mycobacterium tuberculosis GM 1503]
 gi|294994382|ref|ZP_06800073.1| oligoribonuclease [Mycobacterium tuberculosis 210]
 gi|297635119|ref|ZP_06952899.1| oligoribonuclease [Mycobacterium tuberculosis KZN 4207]
 gi|297732110|ref|ZP_06961228.1| oligoribonuclease [Mycobacterium tuberculosis KZN R506]
 gi|298525983|ref|ZP_07013392.1| oligoribonuclease orn [Mycobacterium tuberculosis 94_M4241A]
 gi|306776784|ref|ZP_07415121.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu001]
 gi|306780550|ref|ZP_07418887.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu002]
 gi|306785311|ref|ZP_07423633.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu003]
 gi|306789665|ref|ZP_07427987.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu004]
 gi|306793992|ref|ZP_07432294.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu005]
 gi|306798387|ref|ZP_07436689.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu006]
 gi|306804267|ref|ZP_07440935.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu008]
 gi|306807692|ref|ZP_07444360.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu007]
 gi|306968664|ref|ZP_07481325.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu009]
 gi|306972895|ref|ZP_07485556.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu010]
 gi|307080608|ref|ZP_07489778.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu011]
 gi|307085195|ref|ZP_07494308.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu012]
 gi|313659444|ref|ZP_07816324.1| oligoribonuclease [Mycobacterium tuberculosis KZN V2475]
 gi|54038785|sp|P65598|ORN_MYCBO RecName: Full=Oligoribonuclease
 gi|54041582|sp|P65597|ORN_MYCTU RecName: Full=Oligoribonuclease
 gi|166216268|sp|A1KLK6|ORN_MYCBP RecName: Full=Oligoribonuclease
 gi|166216271|sp|A5U5K8|ORN_MYCTA RecName: Full=Oligoribonuclease
 gi|3261780|emb|CAB08931.1| OLIGORIBONUCLEASE ORN [Mycobacterium tuberculosis H37Rv]
 gi|13882317|gb|AAK46890.1| oligoribonuclease, putative [Mycobacterium tuberculosis CDC1551]
 gi|31619284|emb|CAD97400.1| PROBABLE OLIGORIBONUCLEASE ORN [Mycobacterium bovis AF2122/97]
 gi|121494041|emb|CAL72519.1| Probable oligoribonuclease orn [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124601699|gb|EAY60709.1| oligoribonuclease orn [Mycobacterium tuberculosis C]
 gi|134152323|gb|EBA44368.1| oligoribonuclease orn [Mycobacterium tuberculosis str. Haarlem]
 gi|148506499|gb|ABQ74308.1| oligoribonuclease [Mycobacterium tuberculosis H37Ra]
 gi|148722235|gb|ABR06860.1| oligoribonuclease orn [Mycobacterium tuberculosis F11]
 gi|224774000|dbj|BAH26806.1| oligoribonuclease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319912|gb|ACT24515.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 1435]
 gi|289416961|gb|EFD14201.1| oligoribonuclease orn [Mycobacterium tuberculosis T46]
 gi|289421114|gb|EFD18315.1| oligoribonuclease orn [Mycobacterium tuberculosis CPHL_A]
 gi|289438329|gb|EFD20822.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 605]
 gi|289539647|gb|EFD44225.1| oligoribonuclease orn [Mycobacterium tuberculosis K85]
 gi|289544425|gb|EFD48073.1| oligoribonuclease orn [Mycobacterium tuberculosis T17]
 gi|289686821|gb|EFD54309.1| oligoribonuclease [Mycobacterium tuberculosis 02_1987]
 gi|289691707|gb|EFD59136.1| oligoribonuclease orn [Mycobacterium tuberculosis T92]
 gi|289695207|gb|EFD62636.1| oligoribonuclease orn [Mycobacterium tuberculosis EAS054]
 gi|289710185|gb|EFD74201.1| oligoribonuclease orn [Mycobacterium tuberculosis GM 1503]
 gi|289714207|gb|EFD78219.1| oligoribonuclease orn [Mycobacterium tuberculosis T85]
 gi|298495777|gb|EFI31071.1| oligoribonuclease orn [Mycobacterium tuberculosis 94_M4241A]
 gi|308214844|gb|EFO74243.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu001]
 gi|308326616|gb|EFP15467.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu002]
 gi|308330038|gb|EFP18889.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu003]
 gi|308333882|gb|EFP22733.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu004]
 gi|308337682|gb|EFP26533.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu005]
 gi|308341363|gb|EFP30214.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu006]
 gi|308345880|gb|EFP34731.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu007]
 gi|308349155|gb|EFP38006.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu008]
 gi|308353779|gb|EFP42630.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu009]
 gi|308357722|gb|EFP46573.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu010]
 gi|308361662|gb|EFP50513.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu011]
 gi|308365253|gb|EFP54104.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu012]
 gi|323718919|gb|EGB28073.1| oligoribonuclease orn [Mycobacterium tuberculosis CDC1551A]
 gi|326904125|gb|EGE51058.1| oligoribonuclease orn [Mycobacterium tuberculosis W-148]
 gi|328458177|gb|AEB03600.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 4207]
          Length = 215

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 63/167 (37%), Gaps = 27/167 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA---LKLH---G 64
            D E TGLD  +D++IEI A V   D +       V +  +    S       ++H   G
Sbjct: 8   IDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAEMHSRSG 67

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           + DE        ++  +   D+ NE     + A    ++   D  FI  ++  +  D   
Sbjct: 68  LIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTL--DSFL 125

Query: 120 PSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             R+ID  SI    RR +P            +G      + H AL D
Sbjct: 126 HYRMIDVSSIKELCRRWYPR---------IYFGQPPKGLT-HRALAD 162


>gi|326434278|gb|EGD79848.1| RNA exonuclease 4 [Salpingoeca sp. ATCC 50818]
          Length = 1142

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 62/168 (36%), Gaps = 11/168 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R    D E  G    +     +G + ++D  + N      + P  +       +  G+T 
Sbjct: 339 RVFALDCEMVGTRYTSA----LGRISIVD-EQCNVVLDELVLP-MQVIHDFRTRYSGLTR 392

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             ++    + +I ++       Q A  I H+ K D   ++    R+ +  +  +  +  L
Sbjct: 393 RHMRQAQPWEAIKAKVEALL--QGAIVIGHDVKNDFEVMHIHPLRV-RAAIWDTSDVPAL 449

Query: 128 SIARRKHPSSRNDLNSL-CKRYGITI-SHRSKHGALLDSHLLSDVYIK 173
             A     + R  L +L     G+ I +    H ++ D+     +++K
Sbjct: 450 RAAAGLPVTKRPKLKALSAALLGVDIQTSNQGHSSVEDAQACMRLFLK 497


>gi|55588378|ref|XP_513892.1| PREDICTED: hypothetical protein isoform 8 [Pan troglodytes]
 gi|114560307|ref|XP_001166565.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
 gi|114560309|ref|XP_001166600.1| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes]
 gi|114560312|ref|XP_001166662.1| PREDICTED: hypothetical protein isoform 5 [Pan troglodytes]
 gi|114560314|ref|XP_001166695.1| PREDICTED: interferon stimulated exonuclease gene 20kDa-like 2
           isoform 6 [Pan troglodytes]
 gi|114560316|ref|XP_001166723.1| PREDICTED: hypothetical protein isoform 7 [Pan troglodytes]
          Length = 352

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 58/183 (31%), Gaps = 19/183 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   K   +  +    +++Y+  +  +  ++ P          +  GI  
Sbjct: 177 KMVAIDCEMVGTGPKGH-VSSLARCSIVNYNG-DVLYDEYILPPCHIVDYR-TRWSGIRK 233

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +   F     +            + H    D   +          P   +R    +
Sbjct: 234 QHMVNATPFKIARGQILKIL--TGKIVVGHAIHNDFKALQYFH------PKSLTRDTSHI 285

Query: 128 SIARRKHPSSRN---DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
               RK     N    L  L K+     I +  +S H ++ D+    ++Y K++    + 
Sbjct: 286 PPLNRKADCPENATMSLKHLTKKLLNRDIQV-GKSGHSSVEDAQATMELY-KLVEVEWEE 343

Query: 182 NFG 184
           +  
Sbjct: 344 HLA 346


>gi|13569960|ref|NP_112242.1| interferon-stimulated 20 kDa exonuclease-like 2 [Homo sapiens]
 gi|42559527|sp|Q9H9L3|I20L2_HUMAN RecName: Full=Interferon-stimulated 20 kDa exonuclease-like 2
 gi|10434306|dbj|BAB14212.1| unnamed protein product [Homo sapiens]
 gi|12653599|gb|AAH00575.1| ISG20L2 protein [Homo sapiens]
 gi|45181559|gb|AAS55433.1| HSD-38 [Homo sapiens]
 gi|55960773|emb|CAI16341.1| interferon stimulated exonuclease gene 20kDa-like 2 [Homo sapiens]
 gi|119573304|gb|EAW52919.1| interferon stimulated exonuclease gene 20kDa-like 2, isoform CRA_a
           [Homo sapiens]
 gi|119573305|gb|EAW52920.1| interferon stimulated exonuclease gene 20kDa-like 2, isoform CRA_a
           [Homo sapiens]
          Length = 353

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 58/183 (31%), Gaps = 19/183 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   K   +  +    +++Y+  +  +  ++ P          +  GI  
Sbjct: 178 KMVAIDCEMVGTGPKGH-VSSLARCSIVNYNG-DVLYDEYILPPCHIVDYR-TRWSGIRK 234

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +   F     +            + H    D   +          P   +R    +
Sbjct: 235 QHMVNATPFKIARGQILKIL--TGKIVVGHAIHNDFKALQYFH------PKSLTRDTSHI 286

Query: 128 SIARRKHPSSRN---DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
               RK     N    L  L K+     I +  +S H ++ D+    ++Y K++    + 
Sbjct: 287 PPLNRKADCPENATMSLKHLTKKLLNRDIQV-GKSGHSSVEDAQATMELY-KLVEVEWEE 344

Query: 182 NFG 184
           +  
Sbjct: 345 HLA 347


>gi|50546805|ref|XP_500872.1| YALI0B14179p [Yarrowia lipolytica]
 gi|49646738|emb|CAG83123.1| YALI0B14179p [Yarrowia lipolytica]
          Length = 412

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL- 62
            N+   I  D ET   +     I EIG V ++ +    +  + +  P   K S +   + 
Sbjct: 17  ANRGVFICIDTETA--EHHAGVITEIG-VAVMRFHPIGQPDKPYAAP---KISAQHFVVK 70

Query: 63  --------HGITDEFLKD------------KP--SFSSIFSEFW----DFFNEQNAEWIA 96
                   +G    ++ D             P     +++ E        F++    ++ 
Sbjct: 71  ERSSDRYRNG---NYVPDHRDFFCYGTSQVAPLADIRTVWKELLTGLTAGFDQDPVYYVG 127

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
           H    D+  +      I + P+     IDT  I R      + +L  L + + I   H  
Sbjct: 128 HCISGDLNELKKMDFHIPELPI-----IDTEKIWRCIKKQGKGNLTYLLEAFCIP--HAF 180

Query: 157 KHGALLDSHLLSDVYIKM 174
            H A  D++L   V+  +
Sbjct: 181 LHNAGNDAYLNLMVFQAL 198


>gi|312068745|ref|XP_003137358.1| smfn protein [Loa loa]
 gi|307767487|gb|EFO26721.1| smfn protein [Loa loa]
          Length = 186

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 55/176 (31%), Gaps = 23/176 (13%)

Query: 1   MIRKNKMRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-- 57
           M   ++ R+I+  D E TGLD  +  I+EI  V               +    +      
Sbjct: 1   MGEASRCRRIIWMDCEMTGLDVTSKTIVEIACVITEPDLTIVEEGLNLIISQPKDVLEGM 60

Query: 58  -----EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINA 108
                     +G+  E    K +     +E   +  +           ++   D  F+  
Sbjct: 61  DDWCKATFTSNGLLQEIRSSKITVQQAENEILTYVRQHTDPGMCPLGGNSVGSDRIFLQK 120

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  + K     +  + ++  +A+R +P            Y       + H AL D
Sbjct: 121 YMPTLEKHLHYRNIDVSSIKELAKRWYP----------YIYARKPRKANTHRALGD 166


>gi|167745590|ref|ZP_02417717.1| hypothetical protein ANACAC_00281 [Anaerostipes caccae DSM 14662]
 gi|167654902|gb|EDR99031.1| hypothetical protein ANACAC_00281 [Anaerostipes caccae DSM 14662]
          Length = 310

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 51/160 (31%), Gaps = 35/160 (21%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  K  +     DIETTGL  +   +  IG  E     +  + F                
Sbjct: 1   METKENLLY--LDIETTGLSPETSALSVIGCCEK--GREPRQWF---------------- 40

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118
                 +  L+ K     I + F     +     + +N   FD+ F+  + +       L
Sbjct: 41  -----NESGLEQK----QILTSFLS-CADSYDVIVTYNGGTFDLPFLKKKCEEFGLPYSL 90

Query: 119 DPSRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHR 155
           D  R ID    L   R   P       S+ +  GI  + R
Sbjct: 91  DSKRCIDLYKNLRSFRHLLPLKNLKQKSVEEFLGIQRTDR 130


>gi|255724028|ref|XP_002546943.1| oligoribonuclease, mitochondrial precursor [Candida tropicalis
           MYA-3404]
 gi|240134834|gb|EER34388.1| oligoribonuclease, mitochondrial precursor [Candida tropicalis
           MYA-3404]
          Length = 256

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 24/178 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRT---FQVFLCPNGR--K 54
           M  + +   +  D E TGLD   ND IIEI  +      +             P  R  +
Sbjct: 45  MKSRPEKPIVWVDCEMTGLDVFGNDNIIEICCLITDGNLEIVDEEGYESTIYYPKSRLDQ 104

Query: 55  NSPEALKLH---GITDEFLKDKPSFSSIFS-EFWDFF-----NEQNAEWIAHNAKFDVGF 105
            +   ++ H   G+T + L +      I   E  ++       E++A    ++   D  F
Sbjct: 105 MNEWCIETHGKSGLTAKVLANPDRKLDIVENELLEYIKKYIPKERDALLAGNSIHMDRFF 164

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  E  ++ +     +  + T+          R++   L K        +  H A  D
Sbjct: 165 MMKEFPKVIEHLHYRNIDVSTI-----MEIGYRHN-PDLMKW---QPKKKGSHTARSD 213


>gi|71733293|ref|YP_272859.1| oligoribonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298484922|ref|ZP_07003021.1| Oligoribonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|123638427|sp|Q48P10|ORN_PSE14 RecName: Full=Oligoribonuclease
 gi|71553846|gb|AAZ33057.1| oligoribonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298160609|gb|EFI01631.1| Oligoribonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|330886590|gb|EGH20251.1| oligoribonuclease [Pseudomonas syringae pv. mori str. 301020]
          Length = 178

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 39/180 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNG----- 52
            +NK   I  D+E TGLD   D IIE+  +       T+           +  +      
Sbjct: 1   MQNKQNLIWIDLEMTGLDPDTDVIIEMATI------ITDSELNTLAEGPVIAVHQSDETL 54

Query: 53  RKNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGF 105
            K      + H   G+T    +   S +   ++  +F      E+++    ++   D  F
Sbjct: 55  AKMDEWNTRQHGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGALLD 163
           +   +  +  +     R +D             + L  L  R+   +     S H AL D
Sbjct: 115 LYRHMPTL--ENWFHYRNLDV------------STLKELAARWSPELKFKKGSTHLALDD 160


>gi|312215712|emb|CBX95664.1| hypothetical protein [Leptosphaeria maculans]
          Length = 780

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 73/206 (35%), Gaps = 20/206 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E     +++D+++ +  + L+++  T       + P          +  GIT   L+
Sbjct: 403 IDCEMC--KAEDDQLV-LTRISLMNWEGTV-VLDKLVKPEVA-IKDYLTQWSGITAAMLQ 457

Query: 72  DKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-LSI 129
           D  +  S I  E       +    + H+   D+  +           L    ++DT +  
Sbjct: 458 DVTTTLSEIQKELLKLITPR-TILVGHSLNSDLTAMK----------LTHPFLVDTGILY 506

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
              + P  +  L  L ++Y      +    H ++ D+    D+  +    G +   G   
Sbjct: 507 PHPRGPPYKQSLKWLAQKYLKREVQKGASGHDSVEDARTCLDLVKQKCEKGPRWGSGDTN 566

Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLF 213
            E  F + E+   P+ + + R   + 
Sbjct: 567 AESIFKRLERAIRPHSNEMHRSGAVV 592


>gi|168186726|ref|ZP_02621361.1| possible elongation subunit of DNA-dependent DNA polymerase
           [Clostridium botulinum C str. Eklund]
 gi|169295339|gb|EDS77472.1| possible elongation subunit of DNA-dependent DNA polymerase
           [Clostridium botulinum C str. Eklund]
          Length = 265

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 46/180 (25%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS--KTNRTFQVFLCPNGRKNSPEALKLH 63
           +   + FDIETTG D + +++I I     L+       + F                   
Sbjct: 22  EDNILFFDIETTGFDKEKEKVILISGGWFLENKKFIIKQYF------------------- 62

Query: 64  GITDEFLKDKPSFSS---IFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLD 119
                      S      +   F +   + N+ W ++N   FD  FI   +   N +   
Sbjct: 63  ---------AESLDEEIGVLKAFKEDVIKFNS-WCSYNGKAFDEPFIKKRMDINNIEFTP 112

Query: 120 PSRIIDTLSIARRKHP---SSRNDLNSLCKRYGITISHRSKHGAL-LDSHLLSDVYIKMM 175
           P   ID   I R  +      R +L S+ K  GI       H A  +D  +  ++Y   +
Sbjct: 113 PKEHIDLYRIIRPYYKQLGMERCNLKSVEKYLGI-------HRADQIDGGMSVELYYNFL 165


>gi|322514990|ref|ZP_08068002.1| oligoribonuclease [Actinobacillus ureae ATCC 25976]
 gi|322119043|gb|EFX91207.1| oligoribonuclease [Actinobacillus ureae ATCC 25976]
          Length = 183

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 31/179 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-----NRTFQV---FLCPNG 52
           M + +    I  D+E TGLD + +RIIEI  +               T       L    
Sbjct: 1   MSKLDSQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVLTVHQPDDLLN--- 57

Query: 53  RKNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGF 105
            K S   +K H   G+ +   + K +  ++  +  DF      +  +    ++   D  F
Sbjct: 58  -KMSDWCIKTHTENGLIERVKQSKLTERAVELQTLDFLKRWLPKGASPICGNSVPQDKRF 116

Query: 106 INAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   +  +          + TL  +AR   P     L+          + ++ H AL D
Sbjct: 117 LYKYMPDLADYFHYRHLDVSTLKELARHWKPEI---LD--------QFTKKNTHLALDD 164


>gi|84386967|ref|ZP_00989991.1| oligoribonuclease [Vibrio splendidus 12B01]
 gi|84378257|gb|EAP95116.1| oligoribonuclease [Vibrio splendidus 12B01]
          Length = 181

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 55/179 (30%), Gaps = 33/179 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEA- 59
           +  +    I  D+E TGLD +  +IIEI  +       T+    +    P    + P++ 
Sbjct: 1   MSFSDQNLIWVDLEMTGLDPETHKIIEIATI------VTDSELNILAEGPVLAIHQPQSE 54

Query: 60  ---------LKLHG------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
                        G      I +  + ++ +          +  +  +    ++   D  
Sbjct: 55  LDKMDEWCTTTHTGSGLVKRIQESTVSEQEAIQQTIEFLEKWVPKGKSPICGNSIGQDRR 114

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   +  + +        + TL    R+       L+          S    H AL D
Sbjct: 115 FLYKHMPELEEYFHYRYVDVSTLKELTRRWKPE--VLD--------GFSKSGSHLALDD 163


>gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16]
 gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16]
          Length = 941

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 32/140 (22%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTG D  +  ++ +      +        Q F  P   +   EA+K       
Sbjct: 370 ILALDTETTGTDPMDAELVGMSFSITEN--------QAFYVPVPAER-KEAIK------- 413

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                     I  EF   F  + +  +  N K+D+  +       N       ++ DT+ 
Sbjct: 414 ----------IVREFEPVFKNEKSLKVGQNIKYDMLVLQ------NYGIEVRGKLFDTMV 457

Query: 129 IARRKHPSSRNDLNSLCKRY 148
                 P  R++++ L + Y
Sbjct: 458 AHYVLQPELRHNMDYLAEIY 477


>gi|253682511|ref|ZP_04863308.1| exonuclease [Clostridium botulinum D str. 1873]
 gi|253562223|gb|EES91675.1| exonuclease [Clostridium botulinum D str. 1873]
          Length = 205

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 17/184 (9%)

Query: 10  IVFDIE--TTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK- 61
           +  D E  TT +           IIEIG V   +       +   + P    NS +  K 
Sbjct: 19  LAIDFEFITTKIIENKAKKYFQEIIEIGVVFKSENCC--EKYNEVIKPRYFLNSKDKSKS 76

Query: 62  LHG--ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PL 118
           ++G   + E +++      +F +    + E+   W++     +   +    ++ N + P 
Sbjct: 77  IYGGRFSYEDMQNGLELEKVFKDLKKLYVEKETIWMSWGKA-EYDILKTVCKKYNVNLPF 135

Query: 119 DPSRIID-TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
                +D +L      H +    L+       I I +R  H AL D+  L  +   M   
Sbjct: 136 LKEDYLDLSLEFKNFFHINQNMSLDKALNYLHIPIVNR--HYALPDAEALMKIIYIMFHR 193

Query: 178 GSQI 181
           G ++
Sbjct: 194 GYRL 197


>gi|31432132|gb|AAP53802.1| CAF1 family ribonuclease containing protein [Oryza sativa Japonica
           Group]
 gi|125574820|gb|EAZ16104.1| hypothetical protein OsJ_31552 [Oryza sativa Japonica Group]
          Length = 647

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 52/180 (28%), Gaps = 23/180 (12%)

Query: 75  SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK- 133
            F         F + ++  W+A+++ +D+GF+   LQ   +            +  RR  
Sbjct: 290 RFYEGLLRHLPFGDGRSVTWLAYHSDYDLGFLLRLLQCGGRRRGGGDLPRQLAAFLRRLR 349

Query: 134 --HP---------------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
              P                    L  L +  GI  +  + H A  D+ L    + K+  
Sbjct: 350 ENFPAFYDVRVIRQMLEDHGFSGKLTGLAEHLGIRRTGGAAHHAGSDALLTLSCFFKIFR 409

Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKR-----DKPLFTRITKEELDEHDKTIQTL 231
             S                 ++    I   +             +  E LDE  + I  L
Sbjct: 410 SLSGQQLHQLDARRGLLAGLEEWNMAIKCARHIDDHTRNIKVIEVVAENLDEEARRIGEL 469


>gi|330939856|gb|EGH43089.1| oligoribonuclease [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330978958|gb|EGH78017.1| oligoribonuclease [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 178

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 58/180 (32%), Gaps = 39/180 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNG----- 52
            +NK   I  D+E TGLD   D IIE+  +       T+           +  +      
Sbjct: 1   MQNKQNLIWIDLEMTGLDPDTDVIIEMATI------ITDSELNTLAEGPVIAVHQSDETL 54

Query: 53  RKNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGF 105
            K      + H   G+T    +   S +   ++  +F      E+++    ++   D  F
Sbjct: 55  AKMDEWNTRQHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGALLD 163
           +   +  +       +  + T              L  L  R+   +     S H AL D
Sbjct: 115 LYRHMPTLENYFHYRNLDVST--------------LKELAARWSPELKFKKGSTHLALDD 160


>gi|284162617|ref|YP_003401240.1| hypothetical protein Arcpr_1521 [Archaeoglobus profundus DSM 5631]
 gi|284012614|gb|ADB58567.1| hypothetical protein Arcpr_1521 [Archaeoglobus profundus DSM 5631]
          Length = 233

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 30/168 (17%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGA-----VELLDYSKTNRTFQVFLCPNGRKNS 56
           +R  +   I FDIETTGL S  DRI+ IG      +   +Y  T  T       +G+ + 
Sbjct: 1   MRFVRFYPIFFDIETTGLKSLEDRIVAIGIRVREEIFEDEYEVTTDTKIWLAEEDGKYSE 60

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQ 111
            +  +L            +   + +   +       + ++   + +N  FD+GFI+A   
Sbjct: 61  EK--ELT-----------ALLELHNTLQNLIIFHRDDGRSLLLVGYNIGFDLGFISARSA 107

Query: 112 RINKDPLDPSRIIDTLSIAR-------RKHPSSRNDLNSLCKRYGITI 152
            + +           L   R             R DL  +  RY +  
Sbjct: 108 ILYRHYSIRDSTFRQLRRLRSVLGLAGLLRELPRVDLMHIISRYWLNN 155


>gi|260599488|ref|YP_003212059.1| oligoribonuclease [Cronobacter turicensis z3032]
 gi|260218665|emb|CBA34001.1| Oligoribonuclease [Cronobacter turicensis z3032]
          Length = 181

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 58/190 (30%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSANENNLIWIDLEMTGLDPRQDRIIEIA---------------TLVTDANLNILAEGPV 45

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 46  IAVHQ-SDEQLALMDDWNVRTHTASGLVDRVKASTMGDREAELATIEFLKQWVPAGKSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+ L K+      
Sbjct: 105 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPE---VLDGLKKQ------ 155

Query: 154 HRSKHGALLD 163
             + H AL D
Sbjct: 156 --NTHQALDD 163


>gi|15617165|ref|NP_240378.1| oligoribonuclease [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|11133762|sp|P57637|ORN_BUCAI RecName: Full=Oligoribonuclease
 gi|25338349|pir||H84996 oligoribonuclease [imported] - Buchnera sp. (strain APS)
 gi|10039230|dbj|BAB13264.1| oligoribonuclease [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 184

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 57/176 (32%), Gaps = 27/176 (15%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNR---------TFQVFLCPN 51
           ++ NK   I  D+E TGL+ K  RIIEI   +   + +                + +   
Sbjct: 1   MKINKKNLIWIDLEMTGLNPKVHRIIEIATLITDTNLNIIAEGPVIPIYQKKEHILVMDE 60

Query: 52  GRKNSPEALKLHGITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
             K   E    +G+     K    ++ +          +   Q +    ++   D  F+ 
Sbjct: 61  WNKRIHEN---NGLIKRVEKSLYNEQKAEHETILFLKKWVPIQVSPMCGNSIAQDRRFLF 117

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  +  +     R ID  +I    +  + + L+               H AL D
Sbjct: 118 QYMPHL--ENYFHYRYIDVSTIKELAYRWNPSILDK--------FKKNHYHKALED 163


>gi|269137702|ref|YP_003294402.1| hypothetical protein ETAE_0344 [Edwardsiella tarda EIB202]
 gi|267983362|gb|ACY83191.1| conserved hypothetical protein [Edwardsiella tarda EIB202]
 gi|304557757|gb|ADM40421.1| Oligoribonuclease [Edwardsiella tarda FL6-60]
          Length = 181

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 54/190 (28%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  ++ R I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSASETRLIWIDLEMTGLDPQRDRIIEIA---------------TLVTDADLNVLAEGPV 45

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + LH   D  L                          D  +  +       +     +  
Sbjct: 46  IALHQ-DDAQLALMDEWNVRTHTASGLVARVKASQYDDAAAEQATLDFLRQWVPAGVSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  + +        + TL  +ARR  P     L            
Sbjct: 105 CGNSVGQDRRFLFRYMPELERYFHYRYLDVSTLKELARRWKPEI---LE--------GFK 153

Query: 154 HRSKHGALLD 163
            ++ H AL D
Sbjct: 154 KKNTHQALDD 163


>gi|110835071|ref|YP_693930.1| oligoribonuclease [Alcanivorax borkumensis SK2]
 gi|123050323|sp|Q0VME0|ORN_ALCBS RecName: Full=Oligoribonuclease
 gi|110648182|emb|CAL17658.1| oligoribonuclease [Alcanivorax borkumensis SK2]
          Length = 181

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 54/175 (30%), Gaps = 45/175 (25%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT-------------------NRTFQVFLCPNG 52
            D+E TGL  +NDRIIEI  +                           +         +G
Sbjct: 11  IDLEMTGLSPENDRIIEIATIVTDAELNVLAEGPVLAVHQSDALLDGMDEWNTTHHNNSG 70

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
                +A  ++        D  + S   +    +     +    ++   D  F+   + +
Sbjct: 71  LVARVKASTVN--------DAAAESQTIAFLEQYVEAGMSPMCGNSICQDRRFLANYMPK 122

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGALLD 163
           +  +     R +D             + L  L +R+   I    S  +KH AL D
Sbjct: 123 L--EAFFHYRNLDV------------STLKELARRWKPDILPGFSKENKHLALDD 163


>gi|223934879|ref|ZP_03626798.1| DNA polymerase I [bacterium Ellin514]
 gi|223896332|gb|EEF62774.1| DNA polymerase I [bacterium Ellin514]
          Length = 947

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 81/254 (31%), Gaps = 69/254 (27%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETT LD+K  R+I +                 ++        PE             
Sbjct: 378 FDTETTSLDTKEARLIGLAFAFEKQKG-------FYV---AVPADPE------------- 414

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                  I  EF   F  +  + + HN K+D+  +      ++          DT+    
Sbjct: 415 ---EAREILQEFRAVFENEQIQKVGHNLKYDLAVLKWHGVGVHGKLF------DTMLAHS 465

Query: 132 RKHPSSRNDLNSLCKRY-----------------------GITISHRSKHGALLDSHLLS 168
              P  R+ ++ + + Y                        + ++  +++ A  D+ +  
Sbjct: 466 LIEPEMRHGMDYMSEVYLGYSPISITKLIGDEKSKQLNMADVPVAKVAEY-AAEDADVTW 524

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF-TRITKE-------E 220
            ++ K+     +     K  E  F++ E   +P ++ ++ +          E       E
Sbjct: 525 QLWEKL-----EPLLKEKGQERVFYEVEAPLIPVLTAMEYEGIKVDASALAEFSTQLSKE 579

Query: 221 LDEHDKTIQTLGKN 234
           +  H++TI  L   
Sbjct: 580 MANHEQTIYRLAGQ 593


>gi|118464888|ref|YP_880896.1| oligoribonuclease [Mycobacterium avium 104]
 gi|254774490|ref|ZP_05216006.1| oligoribonuclease [Mycobacterium avium subsp. avium ATCC 25291]
 gi|166216267|sp|A0QDA8|ORN_MYCA1 RecName: Full=Oligoribonuclease
 gi|118166175|gb|ABK67072.1| oligoribonuclease [Mycobacterium avium 104]
          Length = 215

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 27/173 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLH- 63
           +   +  D E TGLD  +D++IEI A V   + +       V +  +    +     +  
Sbjct: 2   RDELVWIDCEMTGLDLGSDKLIEIAALVTDAELNVLGDGVDVVIHADDAALAAMGEVVTE 61

Query: 64  -----GITDE----FLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRI 113
                G+ DE     +    +   +           + A    ++   D  FI  ++  +
Sbjct: 62  MHSRSGLIDEVKASTVDLATAEEMVLDYIRTHVKAPKTAPLAGNSIATDRAFIVRDMPAL 121

Query: 114 NKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             D     R+ID  SI    RR +P            +G  +   + H AL D
Sbjct: 122 --DSYLHYRMIDVSSIKELCRRWYPR---------IYFGQPVKGLT-HRALAD 162


>gi|224085061|ref|XP_002307475.1| predicted protein [Populus trichocarpa]
 gi|222856924|gb|EEE94471.1| predicted protein [Populus trichocarpa]
          Length = 545

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 86/244 (35%), Gaps = 29/244 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D E   + ++   +  +  V++      ++     + P+         +  GIT E
Sbjct: 201 ILALDCEMC-ITNEGFELTRVTLVDIEGQVVLDK----LVKPSN-DIVDYNTRFSGITYE 254

Query: 69  FLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L    +    I  +F     ++    + H+ + D+  +           +    +IDT 
Sbjct: 255 MLNGVTTSLKDIQEDFLKLVYKE-TILVGHSLENDLLALK----------ISHEVVIDTA 303

Query: 128 SIARRKHPSS---RNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDV-YIKMMVGGSQI 181
            + +  HP     +  L  L KR+    I      H ++ D+    ++  +K+  G   +
Sbjct: 304 LLYK--HPRGGNYKTALRVLSKRFLSQEIQQSGAGHDSIEDARATMELALLKIRNGKKLL 361

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE-LDEHDKTIQTLGKNAIWDRY 240
               +  +   F ++   V   +        F   + EE L +  K ++  G + +W ++
Sbjct: 362 TVLSECGKTSSFIDDISIVKRYTSGSSHS--FPVSSDEEALLKARKEVKNDGVHFVWTQF 419

Query: 241 ISSN 244
              N
Sbjct: 420 SELN 423


>gi|303157|gb|AAA15448.1| DNA polymerase epsilon catalytic subunit [Homo sapiens]
          Length = 2257

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 69/206 (33%), Gaps = 45/206 (21%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 245 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 303

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKD---- 116
                  + ++P  + +   +++   E +    + +N   FD  F+ A            
Sbjct: 304 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMQQE 359

Query: 117 -----------PLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYG---ITISHRSKHG- 159
                             +D L   +R    P   ++L +   + G   + +   +  G 
Sbjct: 360 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAASKLGYDPVELDPETCAGS 419

Query: 160 ----------ALLDSHLLSDVYIKMM 175
                     ++ D+     +Y+K +
Sbjct: 420 TEQPQTLATYSVSDAVATYYLYMKYV 445


>gi|209552082|ref|YP_002283998.1| hypothetical protein Rleg2_6230 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539675|gb|ACI59606.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 215

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 16/167 (9%)

Query: 26  IIEIGAVEL--LDYSKTNRTFQVFLCPNGR-----KNSPEALKLHGITDEFLKDKPS-FS 77
           I +IGAV+L   +       ++ ++ P  R     +  P   +L G+T++ ++++    +
Sbjct: 32  IAQIGAVKLGLENDFPLLDMYKAYVRPIDRFGKQYRLDPYFTELTGVTEKDIEEEGLGLA 91

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID-----TLSIARR 132
                   F   +         K ++  +          P  P++  D      L+    
Sbjct: 92  EALDAADVFSGGERFWSWG---KDELNMVAICYYIAGVTPSLPAQRFDNAVKLLLAAGMP 148

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                R   N L   YG+       H A  D+  ++     ++  GS
Sbjct: 149 IEDLGRTPSNKLADYYGVEHPPFKAHHATDDALSVAYTLQHLLRNGS 195


>gi|168032166|ref|XP_001768590.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680089|gb|EDQ66528.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 180

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 25/124 (20%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPE------ 58
           +M  +  D+E +GLD + DRI+EI  +       T+   +  +  P    + PE      
Sbjct: 2   QMPLVWIDLEMSGLDIEKDRILEIACI------VTDGKLEKIVEGPVIVISQPEDVLQGM 55

Query: 59  ---ALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQ------NAEWIAHNAKFDVGFI 106
                + H   G+TD       +      E  +F  +        +    ++   D+ F+
Sbjct: 56  GEWCQEHHAASGLTDSVRASTVTEDQAQQEVLEFLRKHTRGNSGQSMLAGNSIYVDLKFL 115

Query: 107 NAEL 110
              +
Sbjct: 116 KKYM 119


>gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105]
 gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105]
          Length = 927

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 30/141 (21%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD ET  L+  N RI+ +                  + P      P       +T +
Sbjct: 351 PVAFDTETDSLEPMNARIVGL---------------SFSVKPGVGYYIP-------LTHQ 388

Query: 69  FLKDKP--SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            L  +P    + + +    +F + ++  IA NAK+D+  +       N D        DT
Sbjct: 389 DLTAEPQLPLAEVLAFLKPWFEDSDSPKIAQNAKYDLHVM------ANHDVWVKGLFEDT 442

Query: 127 LSIARRKHPSSRNDLNSLCKR 147
           +  +        + +++L  R
Sbjct: 443 MLASYILEAHKPHGMDALALR 463


>gi|255946241|ref|XP_002563888.1| Pc20g14100 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588623|emb|CAP86739.1| Pc20g14100 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 574

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 83/229 (36%), Gaps = 31/229 (13%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K R IV D E   ++     +  + A++ L           ++ P  R  + ++ +  G+
Sbjct: 304 KRRAIVLDCEMVQVEGGRRELAFLSAIDFLTGEVLIDN---YVQPKLRVVNWDS-RFSGV 359

Query: 66  T----DEFLKDKPSF---SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           T    ++ +K   +        S+ W+F + +    + H+   D+  +      I    +
Sbjct: 360 TPGAMNKAVKKGTALFGWEGARSKLWEFMDSE-TVLVGHSLNNDLDVLGIIHWNIVDSSI 418

Query: 119 DPSRIIDTLSIARRKHPSSRN-DLNSLCKR---YGITISHRSKHGALLDSHLLSDVYIKM 174
             S  +     AR   P +R   L +L      Y I +  +  H AL D+H   D+ I  
Sbjct: 419 ITSEAVFYTVHAR--EPLNRTWSLKTLTNELVNYDIQV-GKQGHSALEDAHATRDIVIWC 475

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           +      +     +  R  +E++                 R T+EE+ E
Sbjct: 476 LR--YPEHLKVWADNARDQEEQRAYERE----------LKRTTEEEVKE 512


>gi|255635227|gb|ACU17968.1| unknown [Glycine max]
          Length = 241

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 15/105 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E  G  S     +E+ A   L        F  ++ P     +     + G+T+E 
Sbjct: 140 VAMDCEMVGGGSDGS--LELCARVCLVDEDERLIFHTYVQPEI-PVTNYRYDITGLTEEH 196

Query: 70  LKDKPSFSSIFSEFWDFF------------NEQNAEWIAHNAKFD 102
           L++      +  +                   +    + H+   D
Sbjct: 197 LRNAMPLKEVREKLLQILHNGESIGKVRLDGGKARLLVGHDLAHD 241


>gi|242018598|ref|XP_002429761.1| RNA exonuclease, putative [Pediculus humanus corporis]
 gi|212514773|gb|EEB17023.1| RNA exonuclease, putative [Pediculus humanus corporis]
          Length = 262

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 52/180 (28%), Gaps = 19/180 (10%)

Query: 1   MIRKNKMRK------IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           +I KNK         +  D E     +  D +  I  V      K    +  ++ P  + 
Sbjct: 75  LINKNKKTYPEITKVVALDCEMVSDLNNQDMLARISLVNF----KLECIYDKYVKPQSKV 130

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
                 +  GI +E L +   F  +  E  D    +    + H    D   +     +  
Sbjct: 131 GDYR-TRFSGIREENLMNGADFEVVRKEVKDLLYNR--ILVGHALGNDFKVLKFGHHKQL 187

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                  R        +  +      L  L K +        +H ++ D+     +Y K 
Sbjct: 188 I------RDTSKYEPFKEINDLKSPPLKKLAKMFLNENIQEGEHDSIEDAKTAMKLYKKF 241


>gi|164657189|ref|XP_001729721.1| hypothetical protein MGL_3265 [Malassezia globosa CBS 7966]
 gi|159103614|gb|EDP42507.1| hypothetical protein MGL_3265 [Malassezia globosa CBS 7966]
          Length = 269

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 12/141 (8%)

Query: 9   KIVFDIETTGLDSK--NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            +  D E  G+  +     +  +  V    +   +     F+ P  R        + G+ 
Sbjct: 122 YVAIDCEMVGVGPRGTGSALARVSIVNWHGHVVLD----TFVKPKERVTDYR-TWVSGVR 176

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              LK  PSF+++ +   D    +    + H  + D+  +     R         + +  
Sbjct: 177 PGDLKKAPSFATVQARVADIIKGR--VLVGHAIQNDLRALLLSHPRPKIRDTAGFKPLQE 234

Query: 127 LSIARRKHPSSRNDLNSLCKR 147
           LS  +   P  R  L+ L  R
Sbjct: 235 LSGNKS--PGLR-TLSKLLCR 252


>gi|330888492|gb|EGH21153.1| exonuclease I [Pseudomonas syringae pv. mori str. 301020]
          Length = 124

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 16/121 (13%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--------NGRKNSPEALKLHG 64
           D ETTG++ +NDR +++  +       T+        P        +     P A  + G
Sbjct: 9   DYETTGINPRNDRALQMAGIR------TDTELNEIAPPVNLHCQLSDDILPHPVACMITG 62

Query: 65  ITDEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122
           IT   L +K        +      +        +N  +FD         R   DP     
Sbjct: 63  ITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREW 122

Query: 123 I 123
            
Sbjct: 123 Q 123


>gi|238603146|ref|XP_002395870.1| hypothetical protein MPER_03997 [Moniliophthora perniciosa FA553]
 gi|215467348|gb|EEB96800.1| hypothetical protein MPER_03997 [Moniliophthora perniciosa FA553]
          Length = 151

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 14/115 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS---PEALKLHG--- 64
            D E TGLD + D+I+EI   +   +    +   +  +  + ++         K HG   
Sbjct: 18  IDCEMTGLDPETDKIMEIAVLITNGNLELVDEGIEYIVKLDRKQLDRMGEWCTKQHGESG 77

Query: 65  -----ITDEFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRI 113
                ++  F KD  S   + +    +   ++      ++   D  F+  E+  I
Sbjct: 78  LTKACLSSPFTKDYVS-EEVLAYIKKWIPVQRTGVLAGNSIHMDRMFLAKEMPEI 131


>gi|52425567|ref|YP_088704.1| oligoribonuclease [Mannheimia succiniciproducens MBEL55E]
 gi|59798011|sp|Q65SE1|ORN_MANSM RecName: Full=Oligoribonuclease
 gi|52307619|gb|AAU38119.1| Orn protein [Mannheimia succiniciproducens MBEL55E]
          Length = 186

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 59/178 (33%), Gaps = 31/178 (17%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNGR 53
           ++ +    I  D+E TGLD +N+RIIEI  +                       L     
Sbjct: 1   MQLDNQNLIWIDLEMTGLDPENERIIEIATIVTDKDLNILAEGPVLAVHQSDELL----A 56

Query: 54  KNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFI 106
           K S   +K H   G+ D     K +  +   +  DF  +      +    ++   D  F+
Sbjct: 57  KMSDWCIKTHSANGLVDRVKASKLTERAAELQTIDFLKKWVPKGASPICGNSVAQDKRFL 116

Query: 107 NAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              +  +          + TL  +ARR  P   N               ++ H AL D
Sbjct: 117 FKYMPELADYFHYRHLDVSTLKELARRWKPELLNG-----------FEKKNTHLALDD 163


>gi|255086407|ref|XP_002509170.1| predicted protein [Micromonas sp. RCC299]
 gi|226524448|gb|ACO70428.1| predicted protein [Micromonas sp. RCC299]
          Length = 276

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 9/100 (9%)

Query: 12  FDIE--TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDE 68
            D+E   TG +     + +I  V+  +    N    V++ P  G+K       L GIT++
Sbjct: 29  IDVECVATGNEHNARDVAQIALVDQFERCLLN----VYVKPPEGKKVHSYLTPLTGITED 84

Query: 69  FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
            L                      A  +  N   DV ++ 
Sbjct: 85  VLSAHGVPLEDAMQHVRAALPPH-AVLVGQNIAKDVEWLR 123


>gi|145295978|ref|YP_001138799.1| hypothetical protein cgR_1902 [Corynebacterium glutamicum R]
 gi|57158136|dbj|BAD84105.1| probable oligoribonuclease [Corynebacterium glutamicum]
 gi|140845898|dbj|BAF54897.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 219

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 69/179 (38%), Gaps = 32/179 (17%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTF--QVFLCPNGRKNSPEALKLH- 63
            I  D+ETTGLD+ +  I+E+G +   D       R++     +      ++P    +H 
Sbjct: 7   FIGLDLETTGLDAHSGVILEVGIIIFDDDLMPIAARSWLTNELVEKESIVSAPVVEVMHE 66

Query: 64  --GITDEFLKDK--PSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKD 116
             G+  E LK         + +E   +  E  A     +  +  FD  +++  + ++++ 
Sbjct: 67  ESGL-WEDLKTGHTQPLRQVEAEASAWILEAGANKLPMLGSSVTFDRTWLDHHMPQLHR- 124

Query: 117 PLDPSRIID---TLSIARRKHPSSRND-------LNSL--CKRYGITISHRSKHGALLD 163
            +   R +D    L  +   +     +       L+ L   KR+ +       H AL D
Sbjct: 125 -MFHYRSVDATSVLLASTSLYDFININDQQTLLVLDMLEHLKRWDL-----KPHRALYD 177


>gi|56090375|ref|NP_001007742.1| interferon-stimulated 20 kDa exonuclease-like 2 [Rattus norvegicus]
 gi|81910849|sp|Q6AXU3|I20L2_RAT RecName: Full=Interferon-stimulated 20 kDa exonuclease-like 2
 gi|50927767|gb|AAH79314.1| Interferon stimulated exonuclease gene 20-like 2 [Rattus
           norvegicus]
 gi|149048176|gb|EDM00752.1| rCG62554 [Rattus norvegicus]
          Length = 369

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 64/189 (33%), Gaps = 19/189 (10%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   K  R+  +    +++Y+  +  +  ++ P          +  GI  
Sbjct: 194 KMVAIDCEMVGTGPKG-RVSSLARCSIVNYNG-DVLYDEYIRPPCYIVDYR-TRWSGIRK 250

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             + +   F +  S+     + +    + H    D   +          P   +R    +
Sbjct: 251 CHMVNATPFKTARSQILKILSGK--VVVGHAIHNDYKALQYFH------PKSLTRDTSQI 302

Query: 128 SIARRKHPSSRN---DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +  RK     N    L  L K+     I  +  S H ++ D+    ++Y K++    + 
Sbjct: 303 PLLNRKADCPENVTLSLKHLTKKLLSRDIQ-TGLSGHSSVEDAQATLELY-KLVEVEWEQ 360

Query: 182 NFGFKTNED 190
           +      E+
Sbjct: 361 HLAQNPPEN 369


>gi|257482419|ref|ZP_05636460.1| oligoribonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289623748|ref|ZP_06456702.1| oligoribonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289648635|ref|ZP_06479978.1| oligoribonuclease [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330865886|gb|EGH00595.1| oligoribonuclease [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|331009756|gb|EGH89812.1| oligoribonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 178

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 58/180 (32%), Gaps = 39/180 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNG----- 52
            +NK   I  D+E TGLD   D IIE+  +       T+           +  +      
Sbjct: 1   MQNKQNLIWIDLEMTGLDPDTDVIIEMATI------ITDSELNTLAEGPVIAVHQSDETL 54

Query: 53  RKNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGF 105
            K      + H   G+T    +   S +   ++  +F      E+++    ++   D  F
Sbjct: 55  AKMDEWNTRQHGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGALLD 163
           +   +  +       +  + T              L  L  R+   +     S H AL D
Sbjct: 115 LYRHMPTLENYFHYRNLDVST--------------LKELAARWSPELKFKKGSTHLALDD 160


>gi|323359751|ref|YP_004226147.1| oligoribonuclease [Microbacterium testaceum StLB037]
 gi|323276122|dbj|BAJ76267.1| oligoribonuclease [Microbacterium testaceum StLB037]
          Length = 192

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 56/159 (35%), Gaps = 22/159 (13%)

Query: 17  TGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNG---RKNSPEALKLH---GITDE- 68
           TGLD   D ++EI  V    + +  +  F + + P+            ++H   G+ DE 
Sbjct: 2   TGLDLAVDELVEIAVVVTDFELNVLDPGFHIVIKPDASAMANMGEFVTEMHRSSGLLDEI 61

Query: 69  --FLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
              +    +          F   +  A    +    D  F+   + R+++     +  + 
Sbjct: 62  PNGVSLADAEFQALEYIQRFAPVEGKAPLAGNTIGTDRMFLAKYMPRVDRWLHYRNVDVS 121

Query: 126 TL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++  ++RR +P          + Y    +    H AL D
Sbjct: 122 SIKELSRRWYP----------RAYIHAPAKNGGHRALAD 150


>gi|307942306|ref|ZP_07657657.1| putative exonuclease RNase T and DNA polymerase III [Roseibium sp.
           TrichSKD4]
 gi|307774592|gb|EFO33802.1| putative exonuclease RNase T and DNA polymerase III [Roseibium sp.
           TrichSKD4]
          Length = 195

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 11/121 (9%)

Query: 7   MRKIVFDIETTGL-------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           MR+   D+ TTGL       D    R+++   V        +   Q ++    ++ S  A
Sbjct: 1   MRQTPMDLATTGLPRGRNINDPDYPRMVQFSGVLFTTDGTVHGRAQDYIQQEDKRTSKSA 60

Query: 60  LKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDP 117
             +HGITD   +      +   + F +      +E +      FD+  I A L R+NKDP
Sbjct: 61  ENVHGITDTKSRTLGIPEAIAVAWFTNRLKA--SEIVTGWALPFDLDIIRAALIRMNKDP 118

Query: 118 L 118
           L
Sbjct: 119 L 119


>gi|298711928|emb|CBJ48615.1| phosphotransferase [Ectocarpus siliculosus]
          Length = 528

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 56/173 (32%), Gaps = 24/173 (13%)

Query: 25  RIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSE 82
            +IE   V L  +S K    F+V++ P      +P    L GI    +     F    S+
Sbjct: 335 EVIEFPTVLLDAHSLKVLDEFRVYVRPVRHPILTPFCTSLTGIEQSTVDGGVLFEEALSQ 394

Query: 83  FWDFFN--------EQNAEWI------------AHNAKFDVGFINAELQRINKDPLDPSR 122
             +F          E++  ++            A     D           N   +    
Sbjct: 395 HTEFLRRNSCLPGQERSCLFVTCGNWDLKTMMPAQCKLIDAPVPPHFNSWANIKEVFRDV 454

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +      ++R+    +   + ++    G+ +  R  H  L D   ++ + I++
Sbjct: 455 MYRAARQSQRRPRGGKVGGMPAMLSALGLVLEGR-HHSGLDDCRNIARIAIEL 506


>gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
 gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
          Length = 653

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 50/150 (33%), Gaps = 45/150 (30%)

Query: 10  IVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  D ETTGLD  +D  R+I+I A                  P       +         
Sbjct: 99  LAIDTETTGLDPHSDRLRLIQISA------------------PGIPVLVIDCAAF----- 135

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                       F+   +  N   +E I HNA+FD+ F+           +D   + DT+
Sbjct: 136 --------LPDGFACLKELLNT-PSEKIFHNARFDLQFLM-------GIGIDCFPVFDTM 179

Query: 128 SIARRKHPSS---RNDLNSLCKRY-GITIS 153
             A+   P     +  L  +   Y GI + 
Sbjct: 180 LAAQLLRPCGGPLKAGLAVVADHYLGIKLD 209


>gi|56478391|ref|YP_159980.1| oligoribonuclease [Aromatoleum aromaticum EbN1]
 gi|81821041|sp|Q5P0T5|ORN_AZOSE RecName: Full=Oligoribonuclease
 gi|56314434|emb|CAI09079.1| oligoribonuclease [Aromatoleum aromaticum EbN1]
          Length = 183

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 31/168 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---------KL 62
            D+E TGL   +DRIIEI  V       T         P    + P+++           
Sbjct: 11  LDMEMTGLQPDSDRIIEIAIVITDSQLNTVAE-----APVIAVHQPDSVLDAMDEWNRNT 65

Query: 63  H---GITD----EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           H   G+TD      + +  + + + +          +    ++   D  F+   +  +  
Sbjct: 66  HGKSGLTDRVKASLIGEADAEAQMLAFLQQHVPAHTSPMCGNSICQDRRFMARYMPHLEA 125

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                +  + TL    ++                  +  + KH AL D
Sbjct: 126 WFHYRNLDVSTLKELAKRWRPEVYK----------GVEKKGKHEALAD 163


>gi|117928371|ref|YP_872922.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
 gi|117648834|gb|ABK52936.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
          Length = 550

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 46/138 (33%), Gaps = 40/138 (28%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
           DIETTGL+   DRI  +  +   +     +       P G                    
Sbjct: 380 DIETTGLNWYADRICTVQ-LACGNRVAVVQ------LPEGHTP----------------- 415

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
                           +QN   I HNA+FD+ F+      I      P  +  TL + R 
Sbjct: 416 --------QRLSQILGDQNILKIFHNARFDLRFMVYHWSVI------PQNVACTLELVRL 461

Query: 133 KHPSSR--NDLNSLCKRY 148
            +P  R  + L  + +RY
Sbjct: 462 LNPRERAGHTLREVLERY 479


>gi|332974570|gb|EGK11490.1| oligoribonuclease [Kingella kingae ATCC 23330]
          Length = 182

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 31/168 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----SPEALKLH---G 64
            D+E TGL+   D+IIEI  +    +        V+      +            H   G
Sbjct: 10  LDMEMTGLNPDTDKIIEIAMIITDKHLNVLAQSPVYAIHQSDEIMNGMDEWCTTTHARTG 69

Query: 65  ITDEFLK-----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +T + +K     +    S + +    +          +    D  F+   + R+  +   
Sbjct: 70  LT-QRVKESTWTEAQVESELLAWMQQWLPANTTPMCGNTIHQDRRFMVRHMPRL--EAFF 126

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
             R +D             + L  L KR+   +      +  H AL D
Sbjct: 127 HYRNLDV------------STLKELAKRWNPAVYKGIVKKGSHQALDD 162


>gi|325119113|emb|CBZ54665.1| hypothetical protein NCLIV_050920 [Neospora caninum Liverpool]
          Length = 1395

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 51/147 (34%), Gaps = 16/147 (10%)

Query: 27  IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP-SFSSIFSEFWD 85
            E+G V ++D +   +   VF+ P  R       +  G+ +  L     S   +  +   
Sbjct: 555 TEVGRVSVVDTNG-EKLLDVFVRPKARVIDYL-TRFSGLEEHHLASAEHSLEDVRLQLRQ 612

Query: 86  FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLC 145
                +A  + H+ + D+  +           L   R +DT  +        +N L  L 
Sbjct: 613 VL-PPDAVLVGHSLENDLHALK----------LVHLRCVDTSILYPHATLGLKNSLKRLV 661

Query: 146 KRY--GITISHRSKHGALLDSHLLSDV 170
             +     +   + H +L D+    ++
Sbjct: 662 NVFLPDRKLRREAGHDSLEDARATLNL 688


>gi|154285094|ref|XP_001543342.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150406983|gb|EDN02524.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 508

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 8  RKIVFDIETT----GLDSKND--RIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEA 59
          R +V  + TT    G+    D   +IE+G +  +  +  + +R   V + P     +P  
Sbjct: 13 RYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDAENCKELHRE-SVLVKPVNTPITPLC 71

Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDF 86
            L  +T E ++   +F    ++F  F
Sbjct: 72 TSLTTLTWEHVRSAGTFRDAINQFDAF 98


>gi|125984766|ref|XP_001356147.1| GA16366 [Drosophila pseudoobscura pseudoobscura]
 gi|54644466|gb|EAL33207.1| GA16366 [Drosophila pseudoobscura pseudoobscura]
          Length = 335

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 29/165 (17%)

Query: 9   KIVFDIETTGLDSKNDR---IIEI------GAVELLDYSK--------------TNRTFQ 45
             V D+ETT L + N+    I E+       A+   + +K                    
Sbjct: 21  FAVLDLETTNLPANNNNRVGITELCIYAFEAALLKQNGTKGSGENKVPVPPLPRVVHKLN 80

Query: 46  VFLCPNGRKNSPEALKLHGITDEFLKDKPSFSS-IFSEFWDFFNEQNAE--WIAHN-AKF 101
           V   P+     P+A +  G+ +  L+ +             F     +    +AHN   F
Sbjct: 81  VLFQPS-MMVHPDAERFTGLNNYILERESKLDENSAQMILYFLKHLPSPVCLVAHNGWHF 139

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCK 146
           D   +     ++N +       +D+L  A  +    ++  + L K
Sbjct: 140 DFPIVRKVFAKLNLEFSPTLSCVDSLR-AFLEIDDKQSREDGLMK 183


>gi|149924278|ref|ZP_01912650.1| oligoribonuclease [Plesiocystis pacifica SIR-1]
 gi|149814858|gb|EDM74424.1| oligoribonuclease [Plesiocystis pacifica SIR-1]
          Length = 179

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 53/166 (31%), Gaps = 28/166 (16%)

Query: 12  FDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRK---NSPEALKLH---G 64
            D+E TGLD + + I+E+   V   +         + +               + H   G
Sbjct: 11  LDMEMTGLDPEREVILEVATLVTNAELEIIAEGPDLVVHHGDAVLDGMDAWCTEHHGASG 70

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +T    +   S +   ++  DF  +      +    ++   D  FI   +  +  D    
Sbjct: 71  LTQAVRESSISLAEAEAQTLDFLRQHCEPGKSPLCGNSIGQDRRFIVRYMPAL--DGFLH 128

Query: 121 SRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R +D  SI   ARR +P                      H AL D
Sbjct: 129 YRSVDVSSIKELARRWYPDLPG------------FEKSEAHRALDD 162


>gi|219870303|ref|YP_002474678.1| exonuclease I [Haemophilus parasuis SH0165]
 gi|219690507|gb|ACL31730.1| exonuclease I [Haemophilus parasuis SH0165]
          Length = 457

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 25/143 (17%)

Query: 62  LHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFD-----VGFINAELQRIN 114
           + GIT +   +         +     F++ N   + +N  ++D       F         
Sbjct: 2   VTGITPQLCNQQGLPEPEFAARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYE 61

Query: 115 KDPLDPSRIIDTL--------------SIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
               + +   D L                A          L +L K  GI  +H + H A
Sbjct: 62  YSWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFKLENLTKANGI--AHDNAHDA 119

Query: 161 LLDSHLLSDVYIKMMVGGSQINF 183
           + D +    + +  ++   Q   
Sbjct: 120 MADVYAT--IAMAKLIKQKQPKL 140


>gi|302888846|ref|XP_003043309.1| hypothetical protein NECHADRAFT_102134 [Nectria haematococca mpVI
           77-13-4]
 gi|256724225|gb|EEU37596.1| hypothetical protein NECHADRAFT_102134 [Nectria haematococca mpVI
           77-13-4]
          Length = 400

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 18/163 (11%)

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND 140
            +  D    +N   + H A  +V  + +    +N     P   IDT +  R      R +
Sbjct: 202 QKLKDKVEGRNVVLVMHGAATEVSVMKSLNINLN-----PVFTIDTTTTVRHLFR--RTN 254

Query: 141 LNSLCKRYGITISHRSKHGALLDSHLLSDVYI-------KMMVGGSQINFGFKTNEDRFF 193
           L  L + Y I    RS H A  D+H +  V +       +  +GG+Q+       E    
Sbjct: 255 LKHLLEVYRIPHKSRSLHHAGNDAHFILRVLLMIAVHHVRAKLGGAQLPDWVPVFE---- 310

Query: 194 KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236
              +   P +  ++++ PL      +EL + ++  +TL + A 
Sbjct: 311 TVARSPKPELEEMRKEGPLRITPGHKELKQMERRRETLERIAR 353


>gi|298489770|ref|YP_003719947.1| exonuclease RNase T and DNA polymerase III ['Nostoc azollae' 0708]
 gi|298231688|gb|ADI62824.1| Exonuclease RNase T and DNA polymerase III ['Nostoc azollae' 0708]
          Length = 178

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 62/173 (35%), Gaps = 11/173 (6%)

Query: 11  VFDIETTGLDSK---NDRI--IEIGAVELLDYS--KTNRTFQVFLCPNGRKNSPEA-LKL 62
           V ++E T  D        +  IEIGAV +L+    + +  FQ F+ P       +    L
Sbjct: 2   VINLEATCSDKHTFYRHEMETIEIGAV-ILNRQTWEIDSEFQQFIKPVRNPILTDFWRNL 60

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121
             I+ + +   P F  +  +  ++ +    +       +D        +  N   P  P 
Sbjct: 61  TTISQKQVDTAPQFPEVMPKLAEWMSSFPNDIFCPGGNYDKTQFLQYCKFHNIPYPFGPE 120

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                   +      ++  +    +  G+ +   + +  + ++H ++ +Y  M
Sbjct: 121 HRNIKKQFSEYLGVYNKFGMAQALQHLGMELKG-THYRGIDNAHNIAVIYRYM 172


>gi|307544322|ref|YP_003896801.1| oligoribonuclease [Halomonas elongata DSM 2581]
 gi|307216346|emb|CBV41616.1| oligoribonuclease [Halomonas elongata DSM 2581]
          Length = 197

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 59/177 (33%), Gaps = 39/177 (22%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL------ 60
            R +  D+E TGLD + +RIIE+  +                 P    + P+AL      
Sbjct: 13  QRLVWIDLEMTGLDPERERIIEVATLITDADLNVVAE-----GPVLAVHQPDALLEAMDD 67

Query: 61  ---KLH---GITDEFLKDKPSFSSIFSEFWDFFNEQNA----EWIAHNAKFDVGFINAEL 110
              K H   G+T+         +        F +E  A        ++   D  F+  E+
Sbjct: 68  WNQKTHGGSGLTERVRASAIDTAEAERRTLAFLHEHVAPGTSPMCGNSVHQDRRFLEREM 127

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG----ITISHRSKHGALLD 163
             +        R +D             + L  L KR+     +  S R+ H A+ D
Sbjct: 128 PEL--LAFFHYRNLDV------------STLKELAKRWNPGALVGFSKRNVHLAMDD 170


>gi|294053806|ref|YP_003547464.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
 gi|293613139|gb|ADE53294.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
          Length = 930

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 38/138 (27%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT L+ +   ++ +                             A K H  +  ++
Sbjct: 365 AFDSETTALNPRQAELVGLS---------------------------FATKAH--SGWWV 395

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P+ S         F + +   I HN KFD+  + A+   ++          DT+   
Sbjct: 396 ---PASSEALDALRPLFADNSITKIGHNLKFDLAILAAQSCPVDGP------CYDTMLAH 446

Query: 131 RRKHPSSRNDLNSLCKRY 148
               P  R++L++L + Y
Sbjct: 447 ALIEPEQRHNLDTLAEDY 464


>gi|242066240|ref|XP_002454409.1| hypothetical protein SORBIDRAFT_04g030330 [Sorghum bicolor]
 gi|241934240|gb|EES07385.1| hypothetical protein SORBIDRAFT_04g030330 [Sorghum bicolor]
          Length = 336

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 67/221 (30%), Gaps = 40/221 (18%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
           G D   D   ++  +   ++      FQ ++ P     +    ++ GI  E+L+D     
Sbjct: 128 GSDGSMDLCAKVCLIGEDEHII----FQTYVKP-ILPVTNYRYEVTGIRPEYLRDAMPLK 182

Query: 78  SIFSEFWDFFN-------------EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                  +                 +    + H        ++ +L+R+  +      I 
Sbjct: 183 VAQRRIQEILCNGEPLWKLRPRSYGRAKILVGHG-------LDHDLERLGLEY-PAFMIR 234

Query: 125 DTLSIARRKHPSS-RNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           DT         S   N L  L + Y G  I H        D      +YI+M       +
Sbjct: 235 DTAKYPPLVKTSKLSNSLKYLTQAYLGYDI-HTGIQDPYEDCVAAMRLYIRMRSQAHPRD 293

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
           +   + E            N     R + L  R++ EEL  
Sbjct: 294 YNSGSGE----------AQNNYPAWRQREL-ERMSPEELLA 323


>gi|294658617|ref|XP_460962.2| DEHA2F13772p [Debaryomyces hansenii CBS767]
 gi|202953261|emb|CAG89320.2| DEHA2F13772p [Debaryomyces hansenii]
          Length = 313

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 51  NGRKNSPEALKLHGITDEFLK--DKPSFSSIFSE--FWDFFNEQNAEWIAHNAKFDVGFI 106
           NGR     +   +G T   L   +   F     +  F D  +++    + H+ + D+   
Sbjct: 129 NGRFVPEHSHNYNGKTTYILSQVEAVKFVQSLIQYYFIDLLHKRQCYLVGHDVRGDI--- 185

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
              ++++       +  +DT  I    H  +   L +  +   I   H   H A  D++ 
Sbjct: 186 -EWMRKLGIHFPKDTSSLDTQKIYAASHGMNGASLKNALRSADIP--HAFLHNAGNDAYY 242

Query: 167 LSDVYIKM 174
              + +++
Sbjct: 243 TLVLALRL 250


>gi|111221205|ref|YP_711999.1| oligoribonuclease [Frankia alni ACN14a]
 gi|111148737|emb|CAJ60413.1| Oligoribonuclease [Frankia alni ACN14a]
          Length = 256

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 27/171 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFL-CPNGR--KNSPEALKLH 63
           R +  D E TGLD+ +D ++E+   V   + +  +    + +  P+       P   ++H
Sbjct: 17  RLVWIDCEMTGLDAASDLLLEVACLVTDSELNILDEGIDLVISAPDEALEAMVPVVREMH 76

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINK 115
              G+T        + +   ++  D+   +      A    ++   D  F+   +  +  
Sbjct: 77  QSSGLTAAVRASTLTLADAQAQVLDYVRARVPEVRKAPLCGNSIATDRTFLARYMPAL-- 134

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           D     R+ID  SI   ARR +         +   Y   +  R  H AL D
Sbjct: 135 DAHLHYRMIDVSSIKELARRWY---------VRTYYAAPV-KRGGHRALAD 175


>gi|170594225|ref|XP_001901864.1| exonuclease family protein [Brugia malayi]
 gi|158590808|gb|EDP29423.1| exonuclease family protein [Brugia malayi]
          Length = 648

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 59/199 (29%), Gaps = 16/199 (8%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D E    ++    +  I  V+       +      + P  R       K  GIT++ L
Sbjct: 249 AVDCEMCTTETGESELTRISIVDECYEVLLD----TLVKPRNRIVD-YVTKYSGITEKML 303

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           ++                  +A  + H  + D   +          P      +      
Sbjct: 304 ENVNVRVEDVQRALSHILPNDAILVGHTLECDFNAMRITH------PYCVDISLCLNLSG 357

Query: 131 RRKHPSSRNDLNSLCK-RYGITISHRSKHGALLDSHLLSDVY-IKMMVGGSQINFGFKTN 188
           + +    R+ L +L +      I   + H ++ D+ +   +   K+  G    N     +
Sbjct: 358 KDR---QRSSLKTLARIFLDEEIQGENGHCSVDDAVITMRLLKYKLSHGIRFGNVSLGWS 414

Query: 189 EDRFFKEEKKTVPNISLLK 207
            D + +E   T     + K
Sbjct: 415 FDDWARENGLTTSGARIDK 433


>gi|62639582|ref|XP_574433.1| PREDICTED: interferon-stimulated 20 kDa exonuclease-like 2-like
           [Rattus norvegicus]
 gi|109461802|ref|XP_001080290.1| PREDICTED: interferon-stimulated 20 kDa exonuclease-like 2-like
           [Rattus norvegicus]
          Length = 368

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 66/192 (34%), Gaps = 25/192 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   K  R+  +    +++Y+  +  +  ++ P          +  GI  
Sbjct: 193 KMVAIDCEMVGTGPKG-RVSSLARCSIVNYNG-DVLYDEYIRPPCYIVDYR-TRWSGIRK 249

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-----INKDPLDPSR 122
             + +   F +  S+     + +    + H    D   +     +      ++ PL   +
Sbjct: 250 CHMVNATPFKTARSQILKILSGK--VVVGHAIHNDYKALQYFHPKSLTRDTSQIPLLNRK 307

Query: 123 IID----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                  TLS+ R        D+ +     G++      H ++ D+    ++Y K++   
Sbjct: 308 ADCPENVTLSLKRLTKKLLSRDIQT-----GLS-----GHSSVEDAQATLELY-KLVEVE 356

Query: 179 SQINFGFKTNED 190
            + +      E+
Sbjct: 357 WEQHLAQNPPEN 368


>gi|330965973|gb|EGH66233.1| oligoribonuclease [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 178

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 39/180 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNG----- 52
            +NK   I  D+E TGLD   D IIE+  +       T+           +  +      
Sbjct: 1   MQNKQNLIWIDLEMTGLDPDTDVIIEMATI------ITDSELNTLAEGPVIAVHQSDETL 54

Query: 53  RKNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGF 105
            K      + H   G+T    +   S +   ++  +F      E+++    ++   D  F
Sbjct: 55  AKMDEWNTRQHGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY--GITISHRSKHGALLD 163
           +   +  +  +     R +D             + L  L  R+   +     S H AL D
Sbjct: 115 LYRHMPTL--ENWFHYRNLDV------------STLKELAARWAPELKFKKGSTHLALDD 160


>gi|330951466|gb|EGH51726.1| oligoribonuclease [Pseudomonas syringae Cit 7]
          Length = 178

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 58/180 (32%), Gaps = 39/180 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNG----- 52
            +NK   I  D+E TGLD   D IIE+  +       T+           +  +      
Sbjct: 1   MQNKQNLIWIDLEMTGLDPDTDVIIEMATI------ITDSELNTLAEGPVIAVHQSDETL 54

Query: 53  RKNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGF 105
            K      + H   G+T    +   S +   ++  +F      E+++    ++   D  F
Sbjct: 55  AKMDEWNTRQHGGSGLTQRVRESTVSMAEAETQTLEFIKLWVPERSSPICGNSICQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGALLD 163
           +   +  +       +  + T              L  L  R+   +     S H AL D
Sbjct: 115 LYRHMPTLENYFHYRNLDVST--------------LKELAARWSPELKFKKGSTHLALDD 160


>gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
          Length = 928

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 83/247 (33%), Gaps = 59/247 (23%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ET GLD+    I+ +                  + P      P A   H   D   
Sbjct: 352 AFDLETDGLDTLTANIVGL---------------SFAVAPGEAAYLPVA---HDYLDA-- 391

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++    ++ ++      + +A  +  N K+D G +       N D        DT+  +
Sbjct: 392 PEQLDRDAVLAQLKPLLEDPDASKVGQNLKYDRGVLK------NYDIELAGIKYDTMLES 445

Query: 131 RRKHP-SSRNDLNSLCKRY----------------------GITISHRSKHGALLDSHLL 167
              +    ++D++SL  R+                       I +   + H A  D+ + 
Sbjct: 446 YILNSVVGKHDMDSLSARWLNHKTITFEEIAGKGKNQLTFNQIALEQ-AAHYAAEDADVT 504

Query: 168 SDVYIKM---MVGGSQINFGFKTNEDRFFKEEKKTVPN------ISLLKRDKPLFTRITK 218
             +++KM   +   +     F+  E    K   +   N        L +  K L +R+ +
Sbjct: 505 LQLHLKMWPELEKEAGPKKVFEQIEMPLLKVISRVERNGVLIDQAILAQHSKELTSRLAE 564

Query: 219 EELDEHD 225
            EL  H+
Sbjct: 565 LELKAHE 571


>gi|213401213|ref|XP_002171379.1| RNA exonuclease [Schizosaccharomyces japonicus yFS275]
 gi|211999426|gb|EEB05086.1| RNA exonuclease [Schizosaccharomyces japonicus yFS275]
          Length = 501

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 55/135 (40%), Gaps = 14/135 (10%)

Query: 40  TNRTFQVFLCPNGRKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98
           T++    F+ P G +      +  GI + E L+   +   ++ E +     ++  +I H 
Sbjct: 370 TDKLLDTFIKPKG-EILELNTRFSGIHSAEELETGITMDEMYEELYRIGVNKDTIFIGHG 428

Query: 99  AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSK 157
            + D+  +    +R+          IDT  + R +     R  L  L K+Y  T+    +
Sbjct: 429 LENDMIAMRLVHERV----------IDTAILYRHEKGQPFRYSLKFLTKKYLETVIQTGE 478

Query: 158 HGALLDS-HLLSDVY 171
           H +  D+ + L  V+
Sbjct: 479 HDSEEDAVYALKLVF 493


>gi|323161903|gb|EFZ47777.1| exonuclease family protein [Escherichia coli E128010]
          Length = 823

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 45/195 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAV--------------ELLD----YSKTNR-TFQVFLCPNG 52
            D+ET G +  +  II IGA+              + +D        +R T + +L  + 
Sbjct: 645 IDLETMGKNP-DAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIKWWLKQSR 703

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINA 108
              S             + D+        +  +F +E + E+  H       FD   +  
Sbjct: 704 EAQSAI-----------MADEIPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILRR 752

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             +R       P R  +   +          D ++   R  I      +H AL D+   +
Sbjct: 753 SYERQGIP--CPWRYYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDARYQA 806

Query: 169 D----VYIKMMVGGS 179
                ++ K++   +
Sbjct: 807 KYVSAIWQKLIPSQA 821


>gi|300855347|ref|YP_003780331.1| hypothetical protein CLJU_c21690 [Clostridium ljungdahlii DSM
           13528]
 gi|300435462|gb|ADK15229.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
          Length = 265

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 48/150 (32%), Gaps = 40/150 (26%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FDIETTG D ++D II I            R    +                       +
Sbjct: 28  FDIETTGFDREHDNIILISF---------GRFLSRY---------------------DFE 57

Query: 72  DKPSFSSIFSEFWDFFNEQNAE------WIAHN-AKFDVGFINAELQRINKDPLDPSRII 124
            K  FS +  +  +       +      W ++N   FD  FI     + N     P   I
Sbjct: 58  MKQYFSDVLEDEREVIYNFGLDVKKYSSWCSYNGIAFDEPFIKERAHQSNMCFEAPGHHI 117

Query: 125 DTLSIARRKHP---SSRNDLNSLCKRYGIT 151
           D   + R  +      R +L ++ K  GI 
Sbjct: 118 DLYRLIRPYYKQLGMERCNLKTVEKHLGID 147


>gi|76810706|ref|YP_334337.1| oligoribonuclease [Burkholderia pseudomallei 1710b]
 gi|76580159|gb|ABA49634.1| oligoribonuclease [Burkholderia pseudomallei 1710b]
          Length = 229

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 35/178 (19%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-------LDYSK--TNRTFQVFLCPNGRK 54
           +N++  +  D+E TGLD   DRIIEI  V         ++      +++ +        K
Sbjct: 43  RNELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETL-----AK 97

Query: 55  NSPEALKLHGITDEFLKDKPSFSSI---------FSEFWDFFNEQNAEWIAHNAKFDVGF 105
                   HG     L D+   SS+          +   +      +    ++   D  F
Sbjct: 98  MDDWNKNTHG--RSGLIDRVRASSVTEADAAAQIAAFLAEHVPPGKSPMCGNSICQDRRF 155

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   +  + +     +  + TL    R+   +                 R+ H AL D
Sbjct: 156 MARWMPELERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMHTALAD 203


>gi|332010935|gb|AED98318.1| small RNA degrading nuclease 3 [Arabidopsis thaliana]
          Length = 762

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 70/219 (31%), Gaps = 40/219 (18%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D E    +  +  ++ +GAV+  D       F   + P+ +        + G+T 
Sbjct: 144 RMLSIDCEMVTCEDGSQALVRVGAVD-RDLKVVLDKF---VKPD-KPVIDYKTDITGVTA 198

Query: 68  EFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           E L+    S + I  +   F +      + H    D+  +           +D +R+IDT
Sbjct: 199 EDLERATLSVADIQKKLRRFLSV-GTILVGHGLHNDLQVLR----------IDHARVIDT 247

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITIS-HRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                                 G  +    + H  + D+     + +  +  G+      
Sbjct: 248 SYSV-----------------LGQEVRMDGAAHNCVHDAAAAMKLVLAAVEKGAATL--I 288

Query: 186 KTNEDRFFKEEKKTVPNISLLKRD---KPLFTRITKEEL 221
           +  E+    E+++        K       +   +  EEL
Sbjct: 289 QPTEEMMVAEKRRQEARQEAGKAQLFLHKIPHDVPSEEL 327


>gi|324509601|gb|ADY44034.1| Oligoribonuclease [Ascaris suum]
          Length = 198

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 54/173 (31%), Gaps = 32/173 (18%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--------- 58
           R I  D E TGLD +   ++EI  +                 P+   + PE         
Sbjct: 24  RLIWIDCEMTGLDVRQHTLVEIACIVTEADLSVVAE-----GPDIVISQPEDVLANMSSW 78

Query: 59  ---ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQ 111
                  +G+  +  +   S  +  S+   F  E           ++   D  FI   + 
Sbjct: 79  CRSTFARNGLLQKIRESNISIKAAESQVLSFLKEHTDPGKCPLAGNSVHMDRVFIERYMP 138

Query: 112 RINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            + K        + T+  +ARR +P            +  +     KH AL D
Sbjct: 139 NLVKHLHYRIVDVSTIKEVARRWYPLE----------FASSPQKLQKHRALDD 181


>gi|311695397|gb|ADP98270.1| oligoribonuclease [marine bacterium HP15]
          Length = 180

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 35/180 (19%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA- 59
           M   N  R +  D+E TGLD + +RIIE+  +                 P    + P++ 
Sbjct: 1   MAESN--RLVWIDLEMTGLDPEKERIIEMATIITDSELNIVAE-----GPVIAVHQPQSF 53

Query: 60  --------LKLH---GIT----DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
                    + H   G+T    +  + +  +             +  +    ++   D  
Sbjct: 54  LDSMDEWCTRTHGESGLTKRVQESDISESQAEQQTIEFLKKHVEKGQSPLCGNSIGQDRR 113

Query: 105 FINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   +  +       +  + T+  +ARR  P      + L       +  +  H AL D
Sbjct: 114 FLVKYMPELEGFFHYRNLDVSTVKELARRWRP------DVLA-----GVKKKGSHLALDD 162


>gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103]
 gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103]
          Length = 928

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 83/247 (33%), Gaps = 59/247 (23%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ET GLD+    I+ +                  + P      P A   H   D   
Sbjct: 352 AFDLETDGLDTLTANIVGL---------------SFAVAPGEAAYLPVA---HDYLDA-- 391

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++    ++ ++      + +A  +  N K+D G +       N D        DT+  +
Sbjct: 392 PEQLDRDAVLAQLKPLLEDPDASKVGQNLKYDRGVLK------NYDIELAGIKYDTMLES 445

Query: 131 RRKHP-SSRNDLNSLCKRY----------------------GITISHRSKHGALLDSHLL 167
              +    ++D++SL  R+                       I +   + H A  D+ + 
Sbjct: 446 YILNSVVGKHDMDSLSARWLNHKTITFEEIAGKGKNQLTFNQIALEQ-AAHYAAEDADVT 504

Query: 168 SDVYIKM---MVGGSQINFGFKTNEDRFFKEEKKTVPN------ISLLKRDKPLFTRITK 218
             +++KM   +   +     F+  E    K   +   N        L +  K L +R+ +
Sbjct: 505 LQLHLKMWPELEKEAGPKKVFEQIEMPLLKVISRVERNGVLIDQAILAQHSKELTSRLAE 564

Query: 219 EELDEHD 225
            EL  H+
Sbjct: 565 LELKAHE 571


>gi|53724753|ref|YP_102207.1| oligoribonuclease [Burkholderia mallei ATCC 23344]
 gi|67642879|ref|ZP_00441630.1| oligoribonuclease [Burkholderia mallei GB8 horse 4]
 gi|121598453|ref|YP_993837.1| oligoribonuclease [Burkholderia mallei SAVP1]
 gi|124385187|ref|YP_001026898.1| oligoribonuclease [Burkholderia mallei NCTC 10229]
 gi|126441737|ref|YP_001059867.1| oligoribonuclease [Burkholderia pseudomallei 668]
 gi|126450125|ref|YP_001079814.1| oligoribonuclease [Burkholderia mallei NCTC 10247]
 gi|166999773|ref|ZP_02265607.1| oligoribonuclease [Burkholderia mallei PRL-20]
 gi|167739617|ref|ZP_02412391.1| oligoribonuclease [Burkholderia pseudomallei 14]
 gi|167825224|ref|ZP_02456695.1| oligoribonuclease [Burkholderia pseudomallei 9]
 gi|167895311|ref|ZP_02482713.1| oligoribonuclease [Burkholderia pseudomallei 7894]
 gi|167911947|ref|ZP_02499038.1| oligoribonuclease [Burkholderia pseudomallei 112]
 gi|167919939|ref|ZP_02507030.1| oligoribonuclease [Burkholderia pseudomallei BCC215]
 gi|226197920|ref|ZP_03793494.1| oligoribonuclease [Burkholderia pseudomallei Pakistan 9]
 gi|254176983|ref|ZP_04883640.1| oligoribonuclease [Burkholderia mallei ATCC 10399]
 gi|254208872|ref|ZP_04915220.1| oligoribonuclease [Burkholderia mallei JHU]
 gi|254259729|ref|ZP_04950783.1| oligoribonuclease [Burkholderia pseudomallei 1710a]
 gi|254295656|ref|ZP_04963114.1| oligoribonuclease [Burkholderia pseudomallei 406e]
 gi|59798006|sp|Q62M61|ORN_BURMA RecName: Full=Oligoribonuclease
 gi|166215752|sp|A3MHS8|ORN_BURM7 RecName: Full=Oligoribonuclease
 gi|166215753|sp|A2S4M9|ORN_BURM9 RecName: Full=Oligoribonuclease
 gi|166215754|sp|A1V6I4|ORN_BURMS RecName: Full=Oligoribonuclease
 gi|166215756|sp|A3NBZ6|ORN_BURP6 RecName: Full=Oligoribonuclease
 gi|52428176|gb|AAU48769.1| oligoribonuclease [Burkholderia mallei ATCC 23344]
 gi|121227263|gb|ABM49781.1| oligoribonuclease [Burkholderia mallei SAVP1]
 gi|124293207|gb|ABN02476.1| oligoribonuclease [Burkholderia mallei NCTC 10229]
 gi|126221230|gb|ABN84736.1| oligoribonuclease [Burkholderia pseudomallei 668]
 gi|126242995|gb|ABO06088.1| oligoribonuclease [Burkholderia mallei NCTC 10247]
 gi|147750748|gb|EDK57817.1| oligoribonuclease [Burkholderia mallei JHU]
 gi|157805488|gb|EDO82658.1| oligoribonuclease [Burkholderia pseudomallei 406e]
 gi|160698024|gb|EDP87994.1| oligoribonuclease [Burkholderia mallei ATCC 10399]
 gi|225930108|gb|EEH26121.1| oligoribonuclease [Burkholderia pseudomallei Pakistan 9]
 gi|238524093|gb|EEP87528.1| oligoribonuclease [Burkholderia mallei GB8 horse 4]
 gi|243064261|gb|EES46447.1| oligoribonuclease [Burkholderia mallei PRL-20]
 gi|254218418|gb|EET07802.1| oligoribonuclease [Burkholderia pseudomallei 1710a]
          Length = 201

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 57/185 (30%), Gaps = 49/185 (26%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +N++  +  D+E TGLD   DRIIEI  V       TN T    +   G       L +H
Sbjct: 15  RNELNLVWLDMEMTGLDPDTDRIIEIAVV------VTNSTLD--IAVEGPV-----LAIH 61

Query: 64  GITDEFLKDKPSFSS-------IFSEFW------------------DFFNEQNAEWIAHN 98
             +DE L     ++        +                       +      +    ++
Sbjct: 62  Q-SDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLAEHVPPGKSPMCGNS 120

Query: 99  AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
              D  F+   +  + +     +  + TL    R+   +                 R+ H
Sbjct: 121 ICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMH 170

Query: 159 GALLD 163
            AL D
Sbjct: 171 TALAD 175


>gi|331270038|ref|YP_004396530.1| exonuclease [Clostridium botulinum BKT015925]
 gi|329126588|gb|AEB76533.1| exonuclease [Clostridium botulinum BKT015925]
          Length = 205

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 17/177 (9%)

Query: 10  IVFDIE--TTGLDSKNDR-----IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK- 61
           +  D E  TT +           IIE+GAV           +   + P    NS +  K 
Sbjct: 19  LAIDFEFITTKIIENKAEKYFQEIIEVGAV--FKNENLYEKYSKIIKPRYFFNSKDKSKS 76

Query: 62  LHG--ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PL 118
           ++G   + + +++      +F +    + E+   W++     +   +    ++ + + P 
Sbjct: 77  IYGGRFSYDDIQNGLELDKVFEDLKKLYVEKETIWMSWGKA-EYDILKTVCKKYDVNLPF 135

Query: 119 DPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
                +D     ++    ++N  L+       I I +R  H AL D+  L  +   M
Sbjct: 136 LKEDYLDLSLEFKKFFNINQNISLDKALTYLDIPIVNR--HYALPDAEALMKIIYSM 190


>gi|322789499|gb|EFZ14775.1| hypothetical protein SINV_04966 [Solenopsis invicta]
          Length = 178

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 17/145 (11%)

Query: 77  SSIFSEFWDFFN--EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII----DTLSIA 130
            +    F  F          +AHNA FD+  +   +  +  D ++P  +I    D+L++ 
Sbjct: 5   ENALQAFNLFLKKLATRCLLVAHNASFDIPRLLRLI--LKHDMIEPFYVISGFSDSLAVL 62

Query: 131 RRKHPS----SRNDLNSLCKRY----GITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
           ++  P      +  L++L   +     +  S +  H A  D   L  + +   V   ++ 
Sbjct: 63  KKALPDRKGPGKFKLSTLYNDFLTTDDVDDSDKMFHNAEFDVVALEKLVLHFQV-EEKLF 121

Query: 183 FGFKTNEDRFFKEEKKTVPNISLLK 207
              KT +  F + EKK +  +S  K
Sbjct: 122 LHAKTLQVSFTELEKKHLQELSSFK 146


>gi|192824042|ref|YP_001994504.1| gp46 [Mycobacterium phage KBG]
 gi|190610272|gb|ACE79794.1| gp46 [Mycobacterium phage KBG]
          Length = 608

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 42/153 (27%)

Query: 4   KNKMRKIVFDIETTGLDSKND----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           ++ +R +  D ETTGL+   D    R+I+ G             ++ ++ P  R      
Sbjct: 32  RSNLRILGLDTETTGLNIYQDAFGIRLIQFG-----------NPWESWVLPVERGGVFVG 80

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINK 115
             +                   +   F        + HNA FD+  I   L    +++  
Sbjct: 81  AAVT---------------ALQKVQRF--------VIHNAAFDLQVIERMLGVPMEQMWP 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
              D       +     K   + + L  L K Y
Sbjct: 118 KVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFY 150


>gi|241205368|ref|YP_002976464.1| exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859258|gb|ACS56925.1| Exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 204

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 51/167 (30%), Gaps = 16/167 (9%)

Query: 26  IIEIGAVEL--LDYSKTNRTFQVFLCPNGR-----KNSPEALKLHGITDEFLK-DKPSFS 77
           I +IGAV+L          T++ ++ P  R        P    L GIT+E +        
Sbjct: 32  IAQIGAVKLGLEGEFPILDTYKSYVRPIDRFGKRYPLGPYFTNLTGITEEDIDTHGVVLE 91

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS 137
              S    F     A + +     ++  +          P  P+R  D            
Sbjct: 92  DALSGVDSF--SGGARFWSWGKD-ELNMLAISCYVAGIQPSIPARRFDNAVKLLVAAGMP 148

Query: 138 RNDL-----NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             DL     N L   Y +       H  L D+  +S     +M  G 
Sbjct: 149 IEDLAKTPSNKLADYYQVEHPPLRGHDGLDDALSISYALQHLMKIGK 195


>gi|167525745|ref|XP_001747207.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774502|gb|EDQ88131.1| predicted protein [Monosiga brevicollis MX1]
          Length = 282

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 9/145 (6%)

Query: 29  IGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFN 88
           I  +        +     F+ P  +       +  GI    L D   F  +         
Sbjct: 132 ISIINATGQVVIDE----FVRPQ-QPIVSYNTRWSGIRKRDLVDATPFPKVRDRLRTIL- 185

Query: 89  EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKR 147
            +NA  + H    D   +N   + +N    D S    TL IA           L  L K 
Sbjct: 186 -KNARVVGHAVSNDFRAMNLTSKELNALVYDTSAS-STLKIAALGENDGNAVSLKRLSKY 243

Query: 148 YGITISHRSKHGALLDSHLLSDVYI 172
                    +H +L+D+ +  ++Y 
Sbjct: 244 LLHRTIQEKQHCSLIDARVTLELYQ 268


>gi|254191977|ref|ZP_04898477.1| oligoribonuclease [Burkholderia pseudomallei Pasteur 52237]
 gi|254203892|ref|ZP_04910252.1| oligoribonuclease [Burkholderia mallei FMH]
 gi|254360071|ref|ZP_04976341.1| oligoribonuclease [Burkholderia mallei 2002721280]
 gi|147745404|gb|EDK52484.1| oligoribonuclease [Burkholderia mallei FMH]
 gi|148029311|gb|EDK87216.1| oligoribonuclease [Burkholderia mallei 2002721280]
 gi|157987799|gb|EDO95564.1| oligoribonuclease [Burkholderia pseudomallei Pasteur 52237]
          Length = 203

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 57/185 (30%), Gaps = 49/185 (26%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +N++  +  D+E TGLD   DRIIEI  V       TN T    +   G       L +H
Sbjct: 17  RNELNLVWLDMEMTGLDPDTDRIIEIAVV------VTNSTLD--IAVEGPV-----LAIH 63

Query: 64  GITDEFLKDKPSFSS-------IFSEFW------------------DFFNEQNAEWIAHN 98
             +DE L     ++        +                       +      +    ++
Sbjct: 64  Q-SDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLAEHVPPGKSPMCGNS 122

Query: 99  AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
              D  F+   +  + +     +  + TL    R+   +                 R+ H
Sbjct: 123 ICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMH 172

Query: 159 GALLD 163
            AL D
Sbjct: 173 TALAD 177


>gi|167035943|ref|YP_001671174.1| oligoribonuclease [Pseudomonas putida GB-1]
 gi|166862431|gb|ABZ00839.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           GB-1]
          Length = 180

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 27/175 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAV------ELLDYSKTNRTFQVFLCPNGRKNS 56
            +N    I  D+E TGLD  +D IIE+  +        L                  +  
Sbjct: 1   MQNPQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHS--DDVLARMD 58

Query: 57  PEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAE 109
               + H   G+T    + K S +   ++   F  +      +    ++   D  F+   
Sbjct: 59  EWNTRTHGASGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRH 118

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++ +       +  + TL  +A R  P+ R+                + H AL D
Sbjct: 119 MRNLENYFHYRNLDVSTLKELAARWAPNVRDS-----------FKKGNTHLALDD 162


>gi|292489630|ref|YP_003532520.1| oligoribonuclease [Erwinia amylovora CFBP1430]
 gi|291555067|emb|CBA23161.1| oligoribonuclease [Erwinia amylovora CFBP1430]
 gi|312173806|emb|CBX82060.1| oligoribonuclease [Erwinia amylovora ATCC BAA-2158]
          Length = 193

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 58/176 (32%), Gaps = 27/176 (15%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFL-CPNGRKNSP 57
           +  N    I  D+E TGLD + DRIIEI  +              F V            
Sbjct: 7   MTANANNLIWIDLEMTGLDPERDRIIEIATLVTDADLNILAEGPVFAVHQSDAQLGLMDE 66

Query: 58  EALKLHGITDEFLKDKPSFSSIFS--------EFW-DFFNEQNAEWIAHNAKFDVGFINA 108
             ++ H  T+  L ++   S +          EF   +    ++    ++   D  F+  
Sbjct: 67  WNVRTH--TNSGLVERVKASQVDDRAAELATIEFLQQWVPANSSPICGNSIGQDRRFLFK 124

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            + ++          + TL  +ARR  P      + L          +  H AL D
Sbjct: 125 YMPQLEAYFHYRYLDVSTLKELARRWKP------DILA-----GFKKQGTHQALDD 169


>gi|313885797|ref|ZP_07819541.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924751|gb|EFR35516.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 948

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 44/136 (32%), Gaps = 32/136 (23%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD ET GLD+    I+ +               Q +  P      PE+          
Sbjct: 359 VAFDTETDGLDALCAGIVGMSLCA--------DEQQAYFIP-----LPES---------- 395

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                  + I S   D   ++    +AHNAKFD+  +     R       P  + DT+  
Sbjct: 396 ---AEEAAHILSPLKDLMQDERVLKVAHNAKFDLEVLT----RYGLPEAHP--LYDTMLA 446

Query: 130 ARRKHPSSRNDLNSLC 145
                    + L+ L 
Sbjct: 447 HYLIDADQGHSLDELA 462


>gi|242084190|ref|XP_002442520.1| hypothetical protein SORBIDRAFT_08g021270 [Sorghum bicolor]
 gi|241943213|gb|EES16358.1| hypothetical protein SORBIDRAFT_08g021270 [Sorghum bicolor]
          Length = 238

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 56/172 (32%), Gaps = 14/172 (8%)

Query: 25  RIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALK-LHGITDEFLKDKPSFSSIFSE 82
            IIE  +V +     +   TF  ++ P       +  + L+GI  + +      +     
Sbjct: 55  EIIEFSSVLVSGSTGQLESTFHTYVRPRLHPKLTDYCRDLNGIRQKDVDAGMELAVALRM 114

Query: 83  FWDFFNEQNAEWIAHNA-------KFDVGFINAELQRINK--DPLDPSRIIDTLSIARRK 133
              +  E   +  +H          +D   +     R+     PL   R I+        
Sbjct: 115 HGTWLQEMGTKKSSHFCFVVVTWGNWDCRSMLEPECRLKGIDRPLYFDRWINLRIPFVAT 174

Query: 134 HPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
              S+    L    +  G+    R + GA  D+   + +  ++M  G ++  
Sbjct: 175 FGGSKPKADLADAVRMVGMEWEGRPR-GASDDARNTALLLRELMRRGVELGI 225


>gi|297599826|ref|NP_001047886.2| Os02g0709000 [Oryza sativa Japonica Group]
 gi|255671203|dbj|BAF09800.2| Os02g0709000 [Oryza sativa Japonica Group]
          Length = 329

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 63/210 (30%), Gaps = 43/210 (20%)

Query: 29  IGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF- 87
           I A   L     N  FQ ++ P     +    ++ GI  E+L+D      +     D   
Sbjct: 135 ICARVCLIGEDENVIFQTYVKPTTTVTNYR-YEMTGIRPEYLRDAMPLKLVQRRIQDILC 193

Query: 88  ------------NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHP 135
                       + +    + H        +  EL+R+  +        DT         
Sbjct: 194 NGEPLWKIRPRSSGRARILVGHG-------LEHELERLGLE--------DTAKYPPLMKT 238

Query: 136 SS-RNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFF 193
           S   N L  L + Y G  I H        D      +YI+M       ++   + E    
Sbjct: 239 SKLSNSLKYLTQAYLGYDI-HTGIQDPYEDCVAAMRLYIRMRSQAHPRDYASGSGE---- 293

Query: 194 KEEKKTVPNISLLKRDKPLFTRITKEELDE 223
                   N     R + L  R++ EEL  
Sbjct: 294 ------TQNNYPAWRQREL-ERMSPEELLA 316


>gi|71066107|ref|YP_264834.1| oligoribonuclease [Psychrobacter arcticus 273-4]
 gi|71039092|gb|AAZ19400.1| putative oligoribonuclease protein [Psychrobacter arcticus 273-4]
          Length = 195

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 52/163 (31%), Gaps = 21/163 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRK---NSPEALKLHG--- 64
            D+E TGLD+ ND IIEI  V   +         VF +  + RK         K HG   
Sbjct: 23  IDLEMTGLDTLNDEIIEIATVVTDEDLNVLAEGPVFAIKVSDRKLNGMDDWNTKQHGQSG 82

Query: 65  ----ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
               +    +    + +        + +   +    ++   D  F+  ++  +  +    
Sbjct: 83  LVDRVRRSTVTLAEAEAETLKFLNKWVDSGKSPMCGNSICQDRRFMARQMPEL--EKFFH 140

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R +D  SI         + L                H AL D
Sbjct: 141 YRNLDVSSIKELCFRWRPDVLK--------NFEKGGSHLALDD 175


>gi|332300236|ref|YP_004442157.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
 gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
          Length = 948

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 44/136 (32%), Gaps = 32/136 (23%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD ET GLD+    I+ +               Q +  P      PE+          
Sbjct: 359 VAFDTETDGLDALCAGIVGMSLCA--------DEQQAYFIP-----LPES---------- 395

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                  + I S   D   ++    +AHNAKFD+  +     R       P  + DT+  
Sbjct: 396 ---AEEAAHILSPLKDLMQDERVLKVAHNAKFDLEVLT----RYGLPEAHP--LYDTMLA 446

Query: 130 ARRKHPSSRNDLNSLC 145
                    + L+ L 
Sbjct: 447 HYLIDADQGHSLDELA 462


>gi|292898154|ref|YP_003537523.1| oligoribonuclease [Erwinia amylovora ATCC 49946]
 gi|291198002|emb|CBJ45104.1| oligoribonuclease [Erwinia amylovora ATCC 49946]
          Length = 187

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 58/176 (32%), Gaps = 27/176 (15%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFL-CPNGRKNSP 57
           +  N    I  D+E TGLD + DRIIEI  +              F V            
Sbjct: 1   MTANANNLIWIDLEMTGLDPERDRIIEIATLVTDADLNILAEGPVFAVHQSDAQLGLMDE 60

Query: 58  EALKLHGITDEFLKDKPSFSSIFS--------EFW-DFFNEQNAEWIAHNAKFDVGFINA 108
             ++ H  T+  L ++   S +          EF   +    ++    ++   D  F+  
Sbjct: 61  WNVRTH--TNSGLVERVKASQVDDRAAELATIEFLQQWVPANSSPICGNSIGQDRRFLFK 118

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            + ++          + TL  +ARR  P      + L          +  H AL D
Sbjct: 119 YMPQLEAYFHYRYLDVSTLKELARRWKP------DILA-----GFKKQGTHQALDD 163


>gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN]
 gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN]
          Length = 926

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 45/156 (28%), Gaps = 33/156 (21%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETT LD     I+ I                  + P      P  L   G     
Sbjct: 352 VALDTETTSLDEMRAEIVGI---------------SFSVQPGEAAYIP--LAHTG---PD 391

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
             ++     + +    +  +     +  + K+D           N D      + DT+  
Sbjct: 392 APEQLPLGEVLARLKPWLEDARYPKLGQHVKYDRHVF------ANHDIDVRGYVHDTMLQ 445

Query: 130 ARRKHPSSRNDLNSLCKRY----GITISH---RSKH 158
           +        + L SL +R+    GI+      +  H
Sbjct: 446 SYVLEVHKPHGLASLAERHTGRTGISYEDLCGKGAH 481


>gi|238764684|ref|ZP_04625628.1| Oligoribonuclease [Yersinia kristensenii ATCC 33638]
 gi|238697080|gb|EEP89853.1| Oligoribonuclease [Yersinia kristensenii ATCC 33638]
          Length = 181

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 56/189 (29%), Gaps = 53/189 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           + +N+   I  D+E TGLD   DRIIEI                  +         E   
Sbjct: 1   MTENQNNLIWIDLEMTGLDPLRDRIIEIA---------------TLVTDANLNILAEGPV 45

Query: 60  LKLH------GITDE-------------FLKDKP-----SFSSIFSEFWDFFNEQNAEWI 95
           L +H      G+ DE              +KD P     +          +     +   
Sbjct: 46  LAVHQSDEQLGLMDEWNVRTHTGSGLVQRVKDSPFSDSDAELQTIEFLKQWVPAGVSPIC 105

Query: 96  AHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISH 154
            ++   D  F+   +  +          + TL  +ARR  P        L          
Sbjct: 106 GNSVGQDRRFLFRYMPELEAYFHYRYLDVSTLKELARRWKPEI------LA-----GFKK 154

Query: 155 RSKHGALLD 163
           ++ H AL D
Sbjct: 155 KNTHQALDD 163


>gi|156088805|ref|XP_001611809.1| exonuclease family protein [Babesia bovis]
 gi|154799063|gb|EDO08241.1| exonuclease family protein [Babesia bovis]
          Length = 480

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 63/186 (33%), Gaps = 24/186 (12%)

Query: 8   RKIVFDIE--TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           R    D E  T G  +   RI  +        S  N  F   + P G           GI
Sbjct: 273 RTFAIDCEMVTAGGVTALARITIV-------DSLLNTVFDALVKPEG-DIQDYRTPYSGI 324

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T E L+D     S   E  +     +   + H+   D+              +    ++D
Sbjct: 325 TAESLEDVTIRLSDIQECLNMLIGPDTILVGHSLDNDLKACE----------IAHFNVLD 374

Query: 126 TLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           T          ++  L SL K++ GI +   S H + +D+     +++ M  G   +  G
Sbjct: 375 TALQYIAPRRHNKPSLKSLVKQHIGIELVRDSGHDSYVDASTT--MFLAM-EGVMTLTPG 431

Query: 185 FKTNED 190
            +T  D
Sbjct: 432 VRTLVD 437


>gi|115373916|ref|ZP_01461207.1| oligoribonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|310817902|ref|YP_003950260.1| oligoribonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|115369044|gb|EAU67988.1| oligoribonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|309390974|gb|ADO68433.1| Oligoribonuclease [Stigmatella aurantiaca DW4/3-1]
          Length = 186

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNG--RKNSPEALKLHGI 65
            +  D+E TGLD +   IIEIG +            +  +  P     +  P   ++H  
Sbjct: 8   FVWLDLEMTGLDPETCAIIEIGVIITGPDLVPLAEIERVIWQPEEALARMEPVVREMH-- 65

Query: 66  TDEFLKDK---------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           T   L  K          +   + +    +          ++   D  F+   +  + + 
Sbjct: 66  TRNGLLTKVRASTTSLRVAERDVMALVASYCALGEGILCGNSIHTDRRFLIRYMPMLERF 125

Query: 117 PLDPSRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
                  + +L + +R  +P          + +       + H AL D   
Sbjct: 126 LHYRMVDVTSLKVLSRAWYP----------EVFE-PRKGSAGHTALADIRA 165


>gi|260770593|ref|ZP_05879525.1| oligoribonuclease [Vibrio furnissii CIP 102972]
 gi|260614423|gb|EEX39610.1| oligoribonuclease [Vibrio furnissii CIP 102972]
 gi|315178350|gb|ADT85264.1| oligoribonuclease [Vibrio furnissii NCTC 11218]
          Length = 181

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 33/179 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEA- 59
           +  +    I  D+E TGLD +  +IIEI  +       T+    +    P    + PE+ 
Sbjct: 1   MSFSDQNLIWIDLEMTGLDPETHKIIEIATI------VTDSQLNILAEGPVLAVHQPESE 54

Query: 60  --------LKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVG 104
                      H   G+ +   + + S     ++   F  +      +    ++   D  
Sbjct: 55  LQKMDDWCTNTHTQSGLVERVRQSQVSEDDAVAQTIAFLEQWVPAGKSPICGNSIGQDRR 114

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   + R+  +     R ID  +I           L+          S +  H AL D
Sbjct: 115 FLYKHMPRL--EEYFHYRYIDVSTIKELTRRWQPAVLD--------GFSKQGSHLALDD 163


>gi|124005323|ref|ZP_01690164.1| exonuclease [Microscilla marina ATCC 23134]
 gi|123989145|gb|EAY28723.1| exonuclease [Microscilla marina ATCC 23134]
          Length = 180

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 55/172 (31%), Gaps = 12/172 (6%)

Query: 2   IRKNKMRKIVFDIETT---GLDSKN--DRIIEIGAVELLDYSKTNRTFQ-VFLCPNGRKN 55
           + K   + +V D+E+T   G   +     IIEIG        +   + + + + P   + 
Sbjct: 1   MAKKLDKILVIDVESTCWQGPPPEGQVSEIIEIGICVFDLKERQRESREGILVKPTQSEV 60

Query: 56  SPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-- 112
           SP   +L  IT E +  +              +  Q   W +    +D        +   
Sbjct: 61  SPFCTELTTITPELIDAEGVDLKEACRILRKKYESQQRVWGSW-GDYDRRQFERNCKNRG 119

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
           I          + TL  A +        ++   +     +   + H  + D+
Sbjct: 120 IGYPFGTNHLNVKTL-FAIKNCLERELGMDGAMELMQWELEG-THHRGVDDA 169


>gi|30248106|ref|NP_840176.1| oligoribonuclease [Nitrosomonas europaea ATCC 19718]
 gi|37999372|sp|Q82Y15|ORN_NITEU RecName: Full=Oligoribonuclease
 gi|30179991|emb|CAD83986.1| Exonuclease [Nitrosomonas europaea ATCC 19718]
          Length = 181

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 54/169 (31%), Gaps = 33/169 (19%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----SPEALKLHGITD 67
            D+E TGL+   DRIIE+  V       T     V +                  HG   
Sbjct: 11  IDMEMTGLNPGTDRIIEVALVVTDAQLNTLAEAPVLVVHQPDDILNGMDKWNQSTHG--K 68

Query: 68  EFLKDKP-----SFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             L DK      S + + S    F         +    ++   D  F+   + ++  +  
Sbjct: 69  SGLIDKVKTSILSEAEVESRMLAFLELHVPAGTSPMCGNSICQDRRFLARSMPKL--ESY 126

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH----RSKHGALLD 163
              R +D             + L  L KR+   I+     + KH AL D
Sbjct: 127 FHYRNLDV------------STLKELAKRWKPEITQGFNKQGKHEALAD 163


>gi|20089704|ref|NP_615779.1| hypothetical protein MA0820 [Methanosarcina acetivorans C2A]
 gi|19914634|gb|AAM04259.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 249

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 52/148 (35%), Gaps = 42/148 (28%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             FDIETTGL    DRI  +G  +           ++++               GI    
Sbjct: 88  AFFDIETTGLSPARDRITVVGIYD-------GNESKMYVR--------------GI---- 122

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                +   I  EF  +        ++ N A+FD+ FI +E   +    L     ID + 
Sbjct: 123 -----NLDDIVEEFSKY-----RLLVSFNGARFDIPFIKSEFPELEFKQLH----IDLMY 168

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRS 156
             RR        L ++ K  GI  S  +
Sbjct: 169 PLRRIGYGG--GLKNIEKVLGIRRSEDT 194


>gi|189499514|ref|YP_001958984.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
 gi|189494955|gb|ACE03503.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
          Length = 936

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 35/145 (24%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETT L++    ++ I                            EA  +H  TD+ L 
Sbjct: 367 IDTETTSLNTFEAELVGISICWK---------------------PGEAYFIH-FTDKELS 404

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
              +F     +  D     + +    N K+D+  +     R+           DT+  + 
Sbjct: 405 -AKTFP---GKLQDVLENPDIKKTGQNLKYDILVLKNHHVRL------APVGFDTMLASY 454

Query: 132 RKHPSSRNDLNSLCKRYGITISHRS 156
             +P  +++L+ L K++   ++HR+
Sbjct: 455 VINPEEKHNLDDLAKKH---LNHRT 476


>gi|297824919|ref|XP_002880342.1| hypothetical protein ARALYDRAFT_484002 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326181|gb|EFH56601.1| hypothetical protein ARALYDRAFT_484002 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 344

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 13/111 (11%)

Query: 5   NKMRKIVFDIETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           ++++ +  D E  G   D   D+   +  V+  +           + P          ++
Sbjct: 128 SRLKAVALDCEMVGGGDDGTIDQCASVCLVDEDENVI----LSTHVRPLLPVTDYRH-EV 182

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFF------NEQNAEWIAHNAKFDVGFIN 107
            G+++E LKD      + +                   + H+ + D+  +N
Sbjct: 183 TGLSEEDLKDGMPLEDVRARVVSILCGGHNDGAGRLLLVGHDLRHDMSCLN 233


>gi|319641308|ref|ZP_07996005.1| exonuclease [Bacteroides sp. 3_1_40A]
 gi|317387054|gb|EFV67936.1| exonuclease [Bacteroides sp. 3_1_40A]
          Length = 185

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 67/199 (33%), Gaps = 36/199 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E+ G     + ++  GAV L +  +T  TF     P   +   EAL + G +
Sbjct: 1   MSFYVIDVESDGQILGRNSLVCFGAVRLDNELQT--TFYGKTRPISEEYDGEALAVSGFS 58

Query: 67  DEFLKDKPSFSS---IFSEFWDFFNEQNA----EWIAHNAKFDVGFINAELQRI-NKDPL 118
                +  SF     +F  F ++  E N       IA N  +D  +IN         +P 
Sbjct: 59  R---SEHESFDDPKLVFERFGEWIEETNLKGRPILIADNNGYDASWINWYFLTYSGTNPF 115

Query: 119 ----------DPSRIIDTLSIARRK----HPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
                           DT    +             L++     G   +H     AL ++
Sbjct: 116 GYSSRRISDLWCGFKNDTKMQWKWMRSQEFTDKDGRLHT-----GFPHTHNPVEDALGNA 170

Query: 165 HLLSDVYIKMMVGGSQINF 183
           H L    + M+  G  +  
Sbjct: 171 HAL----LYMINEGLNLKL 185


>gi|282896895|ref|ZP_06304901.1| DNA polymerase A [Raphidiopsis brookii D9]
 gi|281198304|gb|EFA73194.1| DNA polymerase A [Raphidiopsis brookii D9]
          Length = 988

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 24/153 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            K+    + +D ETT LD +N  ++ IG         T      ++ P G          
Sbjct: 382 HKDPENPVAWDTETTDLDPRNANLVGIGCCW-----GTGENDVAYI-PLG---------- 425

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H IT    K+ P  +++ S         +      NAKFD   +  + Q I  D      
Sbjct: 426 HNITSNLEKNLP-LNTVLSTLEKILVSGDYPKTFQNAKFDR--LIFKYQGITLD----GV 478

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY-GITISH 154
           + D +  +   +P   ++L  L  RY G+ ++ 
Sbjct: 479 VFDPMLASYVLNPDRTHNLTDLALRYLGLQLTE 511


>gi|330979931|gb|EGH78229.1| exonuclease [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 137

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/127 (11%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLSIARRKHPS 136
               +F +F    ++  +  +A FD   ++  L+  +          +  ++    +H +
Sbjct: 12  EALLDFMEFVG--DSPILGFHAPFDQHMLSRALKESLGYRLQHAFFDVAEIAPMLCEHAN 69

Query: 137 SRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKE 195
            R+  L+   + +G+    R  H A  D+ + +++ + +     +         +    +
Sbjct: 70  LRHAGLDDWTRFFGLHAEER--HHASADALVTAELALILFSHARRQQIDSPLRLEEALGQ 127

Query: 196 EKKTVPN 202
            ++   +
Sbjct: 128 WRRRRQS 134


>gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3]
          Length = 732

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 82/252 (32%), Gaps = 51/252 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--- 66
           + FD ETT LD+    ++ I      + +           P+G K     + L       
Sbjct: 134 VAFDTETTSLDAMQAELVGISMAIADNVA----------DPSGTKIRAAYVPLSHKNGVG 183

Query: 67  ----DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                   +++               +++   +A N K+D   +    +R   +      
Sbjct: 184 DLLGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYDYLLL----KRYGIETKSFD- 238

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRY-----------------GITIS----HRSKHGA 160
             DT+ I+         + ++ L +++                  +T       R+ H A
Sbjct: 239 --DTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSGRANVTFDLVDIDRATHYA 296

Query: 161 LLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL--LKRDKPLFTRITK 218
             D+ +   ++  +++       G  +  +R  +     +  +    +  D+ + +R++ 
Sbjct: 297 AEDADVTLRLW--LVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSG 354

Query: 219 EELDEHDKTIQT 230
            EL +    ++ 
Sbjct: 355 -ELAQGAARLED 365


>gi|156551267|ref|XP_001600928.1| PREDICTED: similar to ENSANGP00000010833 [Nasonia vitripennis]
          Length = 224

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 55/183 (30%), Gaps = 40/183 (21%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFL------------ 48
           + +N+   +  D+E +GLD   +RI+EI   +   + +  +  FQ  L            
Sbjct: 39  VTQNRNGIVWIDMEMSGLDVDKNRILEIACLITDENLNVISDEFQAVLYQPDTELDTMND 98

Query: 49  ---CPNGRKNSPEALKLHGITDEFLKDKPSFSSI----FSEFWDFFNEQNAEWIAHNAKF 101
                +G+          G+ D   K   +  ++          +  +       ++   
Sbjct: 99  WCQNNHGK---------TGLIDACKKSAETEDAVDINLLYFMMKYIPKGKCPLAGNSVYV 149

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK-HGA 160
           D  F+   +   N         + ++    ++                  I  +   H A
Sbjct: 150 DRLFLRKYMPVSNDYIHYRIIDVSSIKEVVKRWKPEMYS----------NIPKKEFNHRA 199

Query: 161 LLD 163
           L D
Sbjct: 200 LDD 202


>gi|311068878|ref|YP_003973801.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942]
 gi|310869395|gb|ADP32870.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942]
          Length = 787

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 25/141 (17%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           ++  D ETTG++   DR   +G     ++      F +   P G  +  E  +L      
Sbjct: 148 EVALDTETTGVEW-WDR--TVGLSLTFEFGDVEENFYI---PYGHTSDHE--QLTR---- 195

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                     +  +      ++  + + HN+KFD   +  +        +  +   DT+ 
Sbjct: 196 --------GYVMKKLKPHLEKKGTKLVLHNSKFDSHMLLKD-----GITIRNNIYFDTMI 242

Query: 129 IARRKHPSSRNDLNSLCKRYG 149
                + +    L ++  +YG
Sbjct: 243 AHSVLNENDEKGLKAIATKYG 263


>gi|269126134|ref|YP_003299504.1| Exonuclease RNase T and DNA polymerase III [Thermomonospora curvata
           DSM 43183]
 gi|268311092|gb|ACY97466.1| Exonuclease RNase T and DNA polymerase III [Thermomonospora curvata
           DSM 43183]
          Length = 196

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 9/161 (5%)

Query: 11  VFDIETT---GLDSKN--DRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           V D+E T   G         IIEIG  V  L   K      + + P     SP   +L G
Sbjct: 13  VIDVEATCWEGSPPDGQVSEIIEIGLCVVDLAACKRVARHGILVRPERSSVSPFCTELTG 72

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            T + ++   + +       +  +   +   A    +D      +      D    +R I
Sbjct: 73  WTQQEVERGVTLAEACR-ILEREHCARSRPWASWGDYDRKQFERQCAAGQADYPFGARHI 131

Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164
           +  ++    +   R   +    +  G+ +  R  H  + D+
Sbjct: 132 NAKAVFTEVYGLRRRPGMAQALQIAGLPLEGR-HHRGVDDA 171


>gi|238009286|gb|ACR35678.1| unknown [Zea mays]
          Length = 552

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 69/192 (35%), Gaps = 31/192 (16%)

Query: 8   RKIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           + +  D E      G +     +I+I  + +LD           + P          +  
Sbjct: 197 KVLALDCEMCVTKAGFELTRVTLIDIKGLVVLDR---------LVKPANSIIDYN-TRFS 246

Query: 64  GITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           GIT E L D   +   I  EF     ++    + H+ + D+  +           +    
Sbjct: 247 GITAEMLADVSTTLQEIQEEFVGLVYKE-TILVGHSLENDLMALQ----------ISHGL 295

Query: 123 IIDT-LSIARRKHPSSRNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGS 179
           IIDT +    ++    +  L  L +++ G  I +    H ++ D+    ++   ++    
Sbjct: 296 IIDTAVLYKYKRGSRCKIALRVLTRKFLGREIQNTGSGHDSVEDAKAALEL--AILKIKH 353

Query: 180 QINFGFKTNEDR 191
             +FGF+ +  R
Sbjct: 354 GPDFGFQPSLSR 365


>gi|91762381|ref|ZP_01264346.1| Exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718183|gb|EAS84833.1| Exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1002]
          Length = 475

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 68/187 (36%), Gaps = 24/187 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGI 65
           M   ++DIE++  ++    IIE+G + +    K    F      P G      AL ++  
Sbjct: 1   MNLAIWDIESSSANTSWGSIIEVGGILVDPNFKELDRFNFRCRLPEGEVPQAMALIVNKT 60

Query: 66  TDEFL-KDKPSFSSIFSEF-WDFFNEQNAEWIAH-NAKFDVGFINAELQRINKDPL---- 118
           + + L K   S   + S+    F     A ++   N  FD   I  E  R  + P     
Sbjct: 61  SVDLLTKGNLSHYQMLSQLEATFKKWSPAIFMGWSNIGFDDEMIRNEFFRGIRYPYITNA 120

Query: 119 DPSRIIDTLSIARRKHPSSRN--------------DLNSLCKRYGITISHRSKHGALLDS 164
            P++  D L+IAR  H    +               L SL +  G        H AL D+
Sbjct: 121 TPNKRHDGLNIARGAHAVDESVIKTETNAKGNAVMKLESLARMNG--FESSGAHSALFDA 178

Query: 165 HLLSDVY 171
            L   V 
Sbjct: 179 ELTVKVL 185


>gi|93006558|ref|YP_580995.1| oligoribonuclease [Psychrobacter cryohalolentis K5]
 gi|92394236|gb|ABE75511.1| Exonuclease [Psychrobacter cryohalolentis K5]
          Length = 195

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 33/169 (19%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE--- 68
            D+E TGLD+ ND IIEI  V       T+    V              KL+G+ D    
Sbjct: 23  IDLEMTGLDTLNDEIIEIATV------VTDEDLNVLAEGPVFAIKVSDQKLNGMDDWNTK 76

Query: 69  --------------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
                          +    + +        + +   +    ++   D  F+  ++  + 
Sbjct: 77  QHGQSGLVDRVRRSTVTLAEAEAETIKFLNKWVDSGKSPMCGNSICQDRRFMARQMPELE 136

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +      R +D  SI         + L                H AL D
Sbjct: 137 R--FFHYRNLDVSSIKELCFRWRPDVLK--------NFEKGGSHLALDD 175


>gi|323186665|gb|EFZ71991.1| exonuclease family protein [Escherichia coli RN587/1]
          Length = 823

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 45/195 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAV--------------ELLD----YSKTNR-TFQVFLCPNG 52
            D+ET G +  +  II IGA+              + +D        +R T + +L  + 
Sbjct: 645 IDLETMGKNP-DAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIKWWLKQSR 703

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINA 108
              S             + D+        +  +F +E + E+  H       FD   +  
Sbjct: 704 EAQSAI-----------MADEIPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILRR 752

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             +R       P R  +   +          D ++   R  I      +H AL D+   +
Sbjct: 753 SYERQGIP--CPWRYYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDARYQA 806

Query: 169 D----VYIKMMVGGS 179
                ++ K++   +
Sbjct: 807 KYVSAIWQKLIPSQA 821


>gi|153831492|ref|ZP_01984159.1| oligoribonuclease [Vibrio cholerae 623-39]
 gi|148873026|gb|EDL71161.1| oligoribonuclease [Vibrio cholerae 623-39]
          Length = 181

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 55/179 (30%), Gaps = 33/179 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEA- 59
           +  +    I  D+E TGLD +  +IIE+  +       T+    +    P    + PE+ 
Sbjct: 1   MSFSDQNLIWIDLEMTGLDPETHKIIEMATI------VTDSELNILAEGPVIAIHQPESE 54

Query: 60  --------LKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVG 104
                      H   G+     + K S      +   F      E  +    ++   D  
Sbjct: 55  LAKMDEWCTTTHTASGLVARVRQSKVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRR 114

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   + R+  +     R ID  +I           L           S    H AL D
Sbjct: 115 FLYKHMPRL--EAYFHYRYIDVSTIKELTRRWQPEVLK--------EFSKTGSHLALDD 163


>gi|317049763|ref|YP_004117411.1| exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
 gi|316951380|gb|ADU70855.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
          Length = 182

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 57/182 (31%), Gaps = 37/182 (20%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRK 54
           M   N+   I  D+E TGLD + DRIIEI  +                  Q         
Sbjct: 1   MTAGNENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVMAVHQS--DAQLAL 58

Query: 55  NSPEALKLHGITDEFLKDKPS---FSSIFSEF--WDFFNEQ----NAEWIAHNAKFDVGF 105
                ++ H  T+  L D+     F    +E    +F  +      +    ++   D  F
Sbjct: 59  MDDWNVRTH--TNSGLVDRVKASQFDDHAAELATIEFLKQWVPANTSPICGNSIGQDRRF 116

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGAL 161
           +   +  +  +     R +D             + L  L +R+   I         H AL
Sbjct: 117 LFKYMPEL--EAYFHYRYLDV------------STLKELARRWKPDILPGFKKSGSHQAL 162

Query: 162 LD 163
            D
Sbjct: 163 DD 164


>gi|269125505|ref|YP_003298875.1| Exonuclease RNase T and DNA polymerase III [Thermomonospora curvata
           DSM 43183]
 gi|268310463|gb|ACY96837.1| Exonuclease RNase T and DNA polymerase III [Thermomonospora curvata
           DSM 43183]
          Length = 204

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 58/166 (34%), Gaps = 28/166 (16%)

Query: 13  DIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGR------KNSPEALKLHGI 65
           D E TGLD + D ++EI   V   + +  ++   V + P         K   E   + G+
Sbjct: 9   DCEMTGLDLRKDALVEIAVLVTDSELNILDKGVDVVIKPPEEALAQMSKVVREMHTVSGL 68

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            D  L    S          +        + A    ++   D  FI  ++  +  D    
Sbjct: 69  LDA-LPGGVSVGEAEEMVLSYLRTHVRDPKKAPLCGNSIATDRSFIARDMPAL--DAHLH 125

Query: 121 SRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R++D  SI   ARR +P          + Y  +      H AL D
Sbjct: 126 YRMVDVSSIKELARRWYP----------RAYFASPQKTGGHRALAD 161


>gi|114330791|ref|YP_747013.1| DNA polymerase I [Nitrosomonas eutropha C91]
 gi|114307805|gb|ABI59048.1| DNA polymerase I [Nitrosomonas eutropha C91]
          Length = 906

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 26/139 (18%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETT L+     ++ +                    P      P A    G     
Sbjct: 331 VSIDTETTSLNPMEAELVGLSLCTE---------------PGHAAYIPLAHHYQG----- 370

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +  + +   +      +    +   +  N K+D          +N          DTL  
Sbjct: 371 VPSQLNREQVLQRLKPWLENSDIPKVGQNLKYDRHVFANHGVMLNGIA------HDTLLQ 424

Query: 130 ARRKHPSSRNDLNSLCKRY 148
           +        +DL+SL +R+
Sbjct: 425 SYVLESHLSHDLDSLARRH 443


>gi|15600144|ref|NP_253638.1| oligoribonuclease [Pseudomonas aeruginosa PAO1]
 gi|107104050|ref|ZP_01367968.1| hypothetical protein PaerPA_01005123 [Pseudomonas aeruginosa PACS2]
 gi|116053100|ref|YP_793419.1| oligoribonuclease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894046|ref|YP_002442915.1| oligoribonuclease [Pseudomonas aeruginosa LESB58]
 gi|254238334|ref|ZP_04931657.1| oligoribonuclease [Pseudomonas aeruginosa C3719]
 gi|254244161|ref|ZP_04937483.1| oligoribonuclease [Pseudomonas aeruginosa 2192]
 gi|296391791|ref|ZP_06881266.1| oligoribonuclease [Pseudomonas aeruginosa PAb1]
 gi|313109953|ref|ZP_07795880.1| oligoribonuclease [Pseudomonas aeruginosa 39016]
 gi|11386963|sp|P57665|ORN_PSEAE RecName: Full=Oligoribonuclease
 gi|122256887|sp|Q02F67|ORN_PSEAB RecName: Full=Oligoribonuclease
 gi|9951232|gb|AAG08336.1|AE004908_2 oligoribonuclease [Pseudomonas aeruginosa PAO1]
 gi|115588321|gb|ABJ14336.1| oligoribonuclease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170265|gb|EAZ55776.1| oligoribonuclease [Pseudomonas aeruginosa C3719]
 gi|126197539|gb|EAZ61602.1| oligoribonuclease [Pseudomonas aeruginosa 2192]
 gi|218774274|emb|CAW30091.1| oligoribonuclease [Pseudomonas aeruginosa LESB58]
 gi|310882382|gb|EFQ40976.1| oligoribonuclease [Pseudomonas aeruginosa 39016]
          Length = 180

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 55/173 (31%), Gaps = 23/173 (13%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----SPE 58
            +N    I  D+E TGLD   D IIE+  +       T     V       +        
Sbjct: 1   MQNPQNLIWIDLEMTGLDPDRDVIIEMATIVTDSDLNTLAEGPVIAIHQPEEILAGMDEW 60

Query: 59  ALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
             + HG       + +  +    + +   +    +  ++++    ++   D  F+   + 
Sbjct: 61  NTRQHGQSGLTQRVRESTVSMAEAEAQTLAFLEQWVPKRSSPICGNSICQDRRFLYRHMP 120

Query: 112 RINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           R+       +  + TL  +A R  P  R                 + H AL D
Sbjct: 121 RLEGYFHYRNLDVSTLKELAARWAPQVRES-----------FKKGNTHLALDD 162


>gi|21674057|ref|NP_662122.1| hypothetical protein CT1233 [Chlorobium tepidum TLS]
 gi|21647208|gb|AAM72464.1| hypothetical protein CT1233 [Chlorobium tepidum TLS]
          Length = 173

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 113 INKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              +         +L ++RR +     + L  L     +  + R  H A  D+ + + ++
Sbjct: 37  AGSNRAYEGECCCSLLLSRRIYQEAPNHKLQMLVSYAALPQTGR-FHRAQADAEMTAFLW 95

Query: 172 IKMMV 176
           + M+ 
Sbjct: 96  MSMIE 100


>gi|195116613|ref|XP_002002848.1| GI17603 [Drosophila mojavensis]
 gi|193913423|gb|EDW12290.1| GI17603 [Drosophila mojavensis]
          Length = 348

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 60/187 (32%), Gaps = 35/187 (18%)

Query: 9   KIVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQVFLCPNGRKNS--------- 56
             V D+ET+ L    +    I E+           N T      P               
Sbjct: 20  FAVLDLETSNLPEHRNNRVSITELCIYAFDAAILLNNTRSRDSNPADEPVHNELPSAPRV 79

Query: 57  ---------------PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHN 98
                          PEA  + G+++  L+ +   +    E    F E        +AHN
Sbjct: 80  MHKLNLLFQPSMLVLPEAEIITGLSNYLLERESKLNENAGELIKRFVEHLPPPVCLVAHN 139

Query: 99  -AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK 157
              FD   I   L ++N      +  +D+LS A       RND     K   + I  RS+
Sbjct: 140 GWPFDFPIIKQALGKVNISLPASTLCVDSLS-AFMAIDDKRNDKPVAVKESTLPIETRSE 198

Query: 158 HGALLDS 164
              L+D+
Sbjct: 199 ---LVDA 202


>gi|152985597|ref|YP_001350999.1| oligoribonuclease [Pseudomonas aeruginosa PA7]
 gi|166216274|sp|A6VD64|ORN_PSEA7 RecName: Full=Oligoribonuclease
 gi|150960755|gb|ABR82780.1| oligoribonuclease [Pseudomonas aeruginosa PA7]
          Length = 180

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 58/179 (32%), Gaps = 35/179 (19%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPE--- 58
            +N    I  D+E TGLD   D IIE+  +       T+         P    + PE   
Sbjct: 1   MQNPQNLIWIDLEMTGLDPDRDVIIEMATI------VTDSDLNTLAEGPVIAIHQPEEVL 54

Query: 59  ------ALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
                   + HG       + +  +    + +   +    +  ++++    ++   D  F
Sbjct: 55  AGMDEWNTRQHGQSGLTQRVRESTVSMAEAEAQTLAFLEQWVPKRSSPICGNSICQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   + R+       +  + TL  +A R  P  R                 + H AL D
Sbjct: 115 LYRHMPRLEGYFHYRNLDVSTLKELAARWAPQVRES-----------FKKGNTHLALDD 162


>gi|319441755|ref|ZP_07990911.1| DNA polymerase III subunit epsilon [Corynebacterium variabile DSM
           44702]
          Length = 625

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 56/166 (33%), Gaps = 51/166 (30%)

Query: 48  LCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
           + P      P    LHG T+  L   P F+++    +   + +    I H+     GFI 
Sbjct: 169 INPGE---DPGPWHLHGYTEADLGQAPGFATVAPLLFSLLDGR--TVICHDTTVTWGFII 223

Query: 108 AELQRINKDP------------------------LDPSRIIDTLSIARRK-HPSSRNDLN 142
            E +R  +                            P RI+DT++ ARR+  P     L 
Sbjct: 224 QEYRRAQRAANRSAPQGGNRGRRRNTRRPRKIAVPVPERIVDTMTTARRQSVPVIDPRLR 283

Query: 143 SLCKRY----GITI-------------SHRSKHGA----LLDSHLL 167
           S+   Y    G+ +               R+  GA    L D+ +L
Sbjct: 284 SIAAHYRGAEGLELAADTLPDLGAVASEARTATGADELLLADARIL 329


>gi|304414192|ref|ZP_07395560.1| oligoribonuclease (3'->5' exoribonuclease) [Candidatus Regiella
           insecticola LSR1]
 gi|304283406|gb|EFL91802.1| oligoribonuclease (3'->5' exoribonuclease) [Candidatus Regiella
           insecticola LSR1]
          Length = 181

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 12/137 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQ-----VFLCPNGRKNSPEAL 60
            D+E TGL  ++DRIIEI  +        L+        Q       +     +   ++ 
Sbjct: 11  IDLEMTGLYPEHDRIIEIATLVTDANLNLLEEGPVIAIHQSDETLSLMDEWNTRTHNDSG 70

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            ++ I +    +  +          +  +  +    ++   D  F+   +  + K     
Sbjct: 71  LVNRIKNSTTDEAAAEKQTIEFLKKYVPQGVSPICGNSVGQDRRFLFRYMPELEKYFHYR 130

Query: 121 SRIIDTL-SIARRKHPS 136
              + TL  +ARR  P 
Sbjct: 131 YLDVSTLKELARRWKPE 147


>gi|227495351|ref|ZP_03925667.1| exoribonuclease II [Actinomyces coleocanis DSM 15436]
 gi|226831221|gb|EEH63604.1| exoribonuclease II [Actinomyces coleocanis DSM 15436]
          Length = 207

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 61/181 (33%), Gaps = 33/181 (18%)

Query: 1   MIRKNKMRKIV-FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNG---RKN 55
           M      R +V  D E TGLD + D ++E+  V    + +  +    + + P+       
Sbjct: 1   MTINYPARPLVWIDCEMTGLDVEKDALVEVAVVVTDEELNLLDPGIDLLIKPSAEALANM 60

Query: 56  SPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFIN 107
           +     +H   G+ D  L++  S +        +        +      ++   D  F+ 
Sbjct: 61  NDFVRNMHTTSGLLD-DLENGISLAEAEERVLAYVKKFVPQAKRGLLAGNSIGTDKMFLE 119

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK-----HGALL 162
             + R+        R++D             + +  L KR+   +   +      H AL 
Sbjct: 120 RYMPRLMGHL--HYRVVDV------------SSIKELAKRWYHRVFEEAPEKNGGHRALA 165

Query: 163 D 163
           D
Sbjct: 166 D 166


>gi|115534690|ref|NP_506169.2| hypothetical protein K10C8.1 [Caenorhabditis elegans]
 gi|83764264|emb|CAA98954.2| C. elegans protein K10C8.1, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 566

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 45/160 (28%)

Query: 60  LKLHGITDEFLKDKPSFSSI----------FSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           L +  I+D++LK+K +               S      +      + HN+  D  ++   
Sbjct: 231 LHVKNISDDYLKEKDNLERARARCSESVKGVSAILQVVHMTGKLVVGHNSLLDAMYMYHY 290

Query: 110 L-------QRINKDPLD--PSRIIDTLSIA---RRKHPSSRNDLNSLCKRYG-------I 150
                    ++ KD  +    RI+DT  +A   R + P   + L +L   +G       +
Sbjct: 291 FFSHLPANYQMFKDKFNALFPRIMDTKLLAQALRFELPGVGDSLENLGDYFGSDKSDKTV 350

Query: 151 TISHRSK----------------HGALLDSHLLSDVYIKM 174
               R                  H A  DS++  +V++K+
Sbjct: 351 PPELRGFIEPWMNPLEDESENVYHNAGFDSYVTGEVFLKL 390


>gi|298484257|ref|ZP_07002421.1| DNA polymerase type I [Bacteroides sp. D22]
 gi|295085932|emb|CBK67455.1| DNA polymerase I [Bacteroides xylanisolvens XB1A]
 gi|298269582|gb|EFI11179.1| DNA polymerase type I [Bacteroides sp. D22]
          Length = 949

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 32/141 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ETTG +  +  ++ +      +       F V + P+ R             D
Sbjct: 377 KILSLDTETTGTEPMDAELVGMSFSIAEN-----EAFYVPV-PSDR-------------D 417

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LK       I  EF   F  +N+  +  N K+D+  +       N   +    + DT+
Sbjct: 418 EALK-------IVKEFRPVFENENSLKVGQNIKYDMIVLQ------NYGAVVKGPLFDTM 464

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P  R+ ++ L + Y
Sbjct: 465 IAHYVLQPELRHGMDYLAEIY 485


>gi|237829909|ref|XP_002364252.1| oligoribonuclease, putative [Toxoplasma gondii ME49]
 gi|211961916|gb|EEA97111.1| oligoribonuclease, putative [Toxoplasma gondii ME49]
 gi|221507120|gb|EEE32724.1| oligoribonuclease, putative [Toxoplasma gondii VEG]
          Length = 367

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 54/168 (32%), Gaps = 25/168 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDY---SKTNRTFQVFLCPNGRK-NSPEALKLH- 63
            +  D E TGLD + D+IIEI  +                V               K H 
Sbjct: 192 IVWVDCEMTGLDVETDQIIEIAVIVTDGQCKKRIVGPNLIVHASDELLDGMDEWCKKTHG 251

Query: 64  --GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINKD 116
             G+T    K   + +    +  +F  +     + A    ++   D  F+  ++ R+   
Sbjct: 252 ESGLTAACRKSTLTLADAEEQILEFVQKHVATTRVAPLGGNSVHVDRQFLVKQMPRLIAH 311

Query: 117 PLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                  + T+  +A R  P        L K+        + H AL D
Sbjct: 312 LSYRIIDVSTIKELAMRWKPELP-----LVKKA-------ANHRALED 347


>gi|113461243|ref|YP_719312.1| oligoribonuclease [Haemophilus somnus 129PT]
 gi|112823286|gb|ABI25375.1| oligoribonuclease [Haemophilus somnus 129PT]
          Length = 184

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 56/178 (31%), Gaps = 31/178 (17%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNGR 53
           ++ +K   I  D+E TGLD   +RIIEI  +                       L     
Sbjct: 1   MQLDKQNLIWIDLEMTGLDPDKERIIEIATIVTDKDLNILAEGPVLAIHQSNELLN---- 56

Query: 54  KNSPEALKLH---GIT----DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
             +   +K H   G+     +  L ++ +          +  +  +    ++   D  F+
Sbjct: 57  NMNEWCVKTHTSNGLIERVKNSKLTERAAELQTLDFLKKWVPKGVSPICGNSVAQDKRFL 116

Query: 107 NAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              +  + +        + TL  +A R  P   N               ++ H AL D
Sbjct: 117 VNYMPELAEYFHYRHLDVSTLKELASRWKPEILNS-----------FEKKNTHLALDD 163


>gi|323491900|ref|ZP_08097072.1| oligoribonuclease [Vibrio brasiliensis LMG 20546]
 gi|323313843|gb|EGA66935.1| oligoribonuclease [Vibrio brasiliensis LMG 20546]
          Length = 181

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 52/176 (29%), Gaps = 27/176 (15%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-----FQVFLCPNG--RK 54
           +  +    I  D+E TGLD +  ++IEI  +                      P    +K
Sbjct: 1   MSFSDQNLIWIDLEMTGLDPETHKVIEIATIVTDSELNILAEGPVLAIHQ---PEEELQK 57

Query: 55  NSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFIN 107
                   H   G+ D   + K        +  +F  +      +    ++   D  F+ 
Sbjct: 58  MDEWCTTTHTGSGLVDRIRESKIDEQEAIRQTIEFLEKWVPKGKSPICGNSVGQDRRFLY 117

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  + +        + TL    R+       L+          S +  H AL D
Sbjct: 118 KHMPELEQYFHYRYIDVSTLKELTRRWKPE--VLD--------GFSKKGSHLALDD 163


>gi|118098794|ref|XP_001233985.1| PREDICTED: polymerase (DNA directed), epsilon [Gallus gallus]
          Length = 2277

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D + D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 266 LAFDIETTKLPLKFPDPETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 324

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKDPL-- 118
                  + ++P  + +   +++   E +    + +N   FD  F+ A       +    
Sbjct: 325 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIIVTYNGDFFDWPFVEARAAAHGINMYQE 380

Query: 119 -------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 381 IGFQKDSQGEYKASQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEEMCR 440

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 441 MATEEPQTLATYSVSDAVATYYMYMKYV 468


>gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
 gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
          Length = 931

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 32/143 (22%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K +++ FD ETT LD    +I+ +     +            L P     + E L L   
Sbjct: 356 KQKEVCFDTETTSLDEMEAQIVGLAFSWEVHKG------YYILFPEDFSLAKEWLSL--- 406

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                               FF  +N   I  N K+D+  +       N D     ++ D
Sbjct: 407 -----------------LKPFFEAENILKIGQNLKYDLKIL------ANYDIEVRGQLFD 443

Query: 126 TLSIARRKHPSSRNDLNSLCKRY 148
           T+      +P  R++++ L + Y
Sbjct: 444 TMIAHYLLNPDMRHNMDLLAEAY 466


>gi|66822265|ref|XP_644487.1| RNA exonuclease 2 [Dictyostelium discoideum AX4]
 gi|66822817|ref|XP_644763.1| RNA exonuclease 2 [Dictyostelium discoideum AX4]
 gi|122057700|sp|Q556Y2|ORN_DICDI RecName: Full=Probable oligoribonuclease; AltName: Full=RNA
           exonuclease 2 homolog
 gi|60472610|gb|EAL70561.1| RNA exonuclease 2 [Dictyostelium discoideum AX4]
 gi|60472946|gb|EAL70895.1| RNA exonuclease 2 [Dictyostelium discoideum AX4]
          Length = 190

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 60/182 (32%), Gaps = 40/182 (21%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV---------ELLDYSKTNRTFQVFLCPNG 52
           I +   R +  D+E TGLD   D I+E+  V         E       +R+ +V      
Sbjct: 12  INERSKRMVWVDLEMTGLDISKDVILEMAIVITDAELNVIEKGPNLVIHRSDEVL----- 66

Query: 53  RKNSPEALKLHGIT--DEFLKD-KPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGF 105
           +  +   ++ HG +   E +++ K S         +F  +           +    D  F
Sbjct: 67  KNMNDWCIEHHGKSGLTEDVRNSKISLEEAEKIMLEFVRKHTDKGICPLAGNTVHEDRRF 126

Query: 106 INAEL----QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
           +  E+    + ++   +D S I +         PS +                   H AL
Sbjct: 127 LLKEMPTFAEHLHYRIIDVSTIKELSRRWYPYIPSPKKVCG---------------HRAL 171

Query: 162 LD 163
            D
Sbjct: 172 QD 173


>gi|323138715|ref|ZP_08073781.1| hypothetical protein Met49242DRAFT_3169 [Methylocystis sp. ATCC
           49242]
 gi|322396070|gb|EFX98605.1| hypothetical protein Met49242DRAFT_3169 [Methylocystis sp. ATCC
           49242]
          Length = 187

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 59/176 (33%), Gaps = 27/176 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVFLCP--NGRKN---SPEALK 61
            + +D E +GLD     +IEIG   V   +    + ++   + P    R        A +
Sbjct: 7   PVFYDCEASGLDGF---VIEIGWAFVNPSNGQIVSASY--LVRPLSEWRIETSWDENAGE 61

Query: 62  LHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           LHGI+   L         I +        +       ++ FD  ++    +    +P   
Sbjct: 62  LHGISLADLYARGVPVHDIANAMNHALAGRELY---SDSPFDESWLVQIFEGAGIEPSFT 118

Query: 121 SRII--DTL---SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            R    D L   ++A R     R                  +H A +D+ L + ++
Sbjct: 119 VRQTSADHLLEKAVAERNFDVRRYR--DARDEA----EQNRRHRAHVDALLWAQLW 168


>gi|289621515|emb|CBI52298.1| unnamed protein product [Sordaria macrospora]
          Length = 659

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 63/197 (31%), Gaps = 24/197 (12%)

Query: 8   RKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++   D E          +  I  V        +      + P+ +       +  GIT
Sbjct: 320 REVYALDCEMCVTGEAEYSLTRISLVAWDGSVVLDE----LVKPD-KPIIDYVTRFSGIT 374

Query: 67  DEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            E +     +   I +   D    + +  + H+   D+  +           L    I+D
Sbjct: 375 KEMIDPVNTTLKDIQARLLDILGPK-SILLGHSLDSDLKALK----------LAHPFIVD 423

Query: 126 T--LSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           T  L    R  P  +  L  L +++    +  +  + H ++ D+    D+  +    G  
Sbjct: 424 TSLLFPHPRGFPLKQ-SLKYLAQKFLNREVQKAGEAGHDSIEDAKTCLDLVKRKCEKGKA 482

Query: 181 INFGFKTNEDRFFKEEK 197
              G    E+ F +  +
Sbjct: 483 WGAGESQGENLFKRLAR 499


>gi|332525250|ref|ZP_08401423.1| oligoribonuclease [Rubrivivax benzoatilyticus JA2]
 gi|332108532|gb|EGJ09756.1| oligoribonuclease [Rubrivivax benzoatilyticus JA2]
          Length = 186

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 50/171 (29%), Gaps = 23/171 (13%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY---SKTNRTFQVFLCPNGRK-NSPEAL 60
           +    I  D+E TGL    DRIIEI  V              F V               
Sbjct: 9   SDQNLIWIDLEMTGLYPATDRIIEIAVVVTDPQLTVRVEGPVFAVHQSDATLDAMDAWNK 68

Query: 61  KLHG----ITD---EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             HG    I       + +  + +        +     +    ++   D  F+   + ++
Sbjct: 69  GTHGRSGLIDRVKASTVDEAEAEARTIEFLQRYVPRGKSPMCGNSICQDRRFLANYMPKL 128

Query: 114 NKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                  +  + TL  +ARR  P     L+   K           H AL D
Sbjct: 129 EAFFHYRNLDVSTLKELARRWKPE---VLDGFKKA--------QAHTALAD 168


>gi|311739312|ref|ZP_07713148.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
          ATCC 33035]
 gi|311305610|gb|EFQ81677.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
          ATCC 33035]
          Length = 65

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVE 33
            V D ETTG + + DRIIE+ AV 
Sbjct: 31 FAVIDTETTGFNKRYDRIIELTAVR 55


>gi|225718354|gb|ACO15023.1| Oligoribonuclease, mitochondrial precursor [Caligus clemensi]
          Length = 230

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 26/175 (14%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN------S 56
            N  R +  D E TGLD + D ++E+  +       +      + +              
Sbjct: 49  TNLRRLVWIDCEMTGLDIEKDVLMEVAVIVTDSSLREVTPGINLIIHQPDSILNAMTEFP 108

Query: 57  PEALKLHGITDE------FLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAK-FDVGFINA 108
            E+  L G+T+        L++      I                +A N+   D+ F+  
Sbjct: 109 EESHALTGLTEACRASQIDLRNA--EDQICRHIRQGLSGTTGTPLLAGNSVGHDLKFLQK 166

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  +    L   +I+D  SI       +++ L+   K+       +  H A+ D
Sbjct: 167 YMPAVK--DLLHYKILDVSSINSCYQLWNKSVLHQCPKK-------KRLHRAMED 212


>gi|289804727|ref|ZP_06535356.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 63

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236
           Q +  F    +   ++ + T+  I + +  +      ++EEL  H+  +   Q  G + +
Sbjct: 2   QTSMTFAMEGETQRQQGEATIQRI-VRQASRLRVVFASEEELAAHESRLDLVQKKGGSCL 60

Query: 237 WD 238
           W 
Sbjct: 61  WR 62


>gi|153217654|ref|ZP_01951335.1| oligoribonuclease [Vibrio cholerae 1587]
 gi|229519881|ref|ZP_04409314.1| oligoribonuclease [Vibrio cholerae TM 11079-80]
 gi|297582247|ref|ZP_06944163.1| oligoribonuclease [Vibrio cholerae RC385]
 gi|124113399|gb|EAY32219.1| oligoribonuclease [Vibrio cholerae 1587]
 gi|229343122|gb|EEO08107.1| oligoribonuclease [Vibrio cholerae TM 11079-80]
 gi|297533548|gb|EFH72393.1| oligoribonuclease [Vibrio cholerae RC385]
          Length = 181

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 55/179 (30%), Gaps = 33/179 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEA- 59
           +  +    I  D+E TGLD +  +IIE+  +       T+    +    P    + PE+ 
Sbjct: 1   MSFSDQNLIWIDLEMTGLDPETHKIIEMATI------VTDSELNILAEGPVIAIHQPESE 54

Query: 60  --------LKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVG 104
                      H   G+     + K S      +   F      E  +    ++   D  
Sbjct: 55  LAKMDEWCTTTHTASGLVARVRQSKVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRR 114

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   + R+  +     R ID  +I           L           S    H AL D
Sbjct: 115 FLYKHMPRL--EAYFHYRYIDVSTIKELTRRWQPEVLK--------EFSKTGSHLALDD 163


>gi|72382587|ref|YP_291942.1| DNA polymerase I [Prochlorococcus marinus str. NATL2A]
 gi|72002437|gb|AAZ58239.1| DNA polymerase A [Prochlorococcus marinus str. NATL2A]
          Length = 986

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +  + I  D ETT L+     ++ +G                ++    +    + +
Sbjct: 378 MKHTDSTKPIAIDTETTSLNPFKAELVGLGFCFGESLKDIV-----YIPIGHQNKEGDLI 432

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           K++ I      ++     +     D+F+         NAK+D   +      +N      
Sbjct: 433 KINQI------NQLKIEEVIFALQDWFSSNENHKTLQNAKYDRLILLRHGIILNGV---- 482

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKR 147
             +IDTL        + ++ L+ +  R
Sbjct: 483 --VIDTLLADYIFDATLKHSLDEIAYR 507


>gi|229817154|ref|ZP_04447436.1| hypothetical protein BIFANG_02413 [Bifidobacterium angulatum DSM
           20098]
 gi|229784943|gb|EEP21057.1| hypothetical protein BIFANG_02413 [Bifidobacterium angulatum DSM
           20098]
          Length = 217

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 25/170 (14%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP---EALKL 62
           R I  D E TGLD    D ++E+  V    D +  +      + P+ +           +
Sbjct: 17  RLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSQKAVDHMNDFVRNM 76

Query: 63  H---GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-----AHNAKFDVGFINAELQRIN 114
           H   G+ +E  ++  S     ++  D+      + +      ++   D  F++  +  + 
Sbjct: 77  HTRSGLINE-WENGLSLEEAQAKVVDYVKRFTPDGVKPLLAGNSIGSDKKFLDHYMPELM 135

Query: 115 KDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +        + TL  +ARR +P            Y         H AL D
Sbjct: 136 EHLHYRVIDVSTLKELARRWYP----------AVYQNRPPKNGGHRALAD 175


>gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822]
 gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822]
          Length = 966

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 54/189 (28%), Gaps = 49/189 (25%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + +D ETT LD     ++ IG      +  T+  +       G +              
Sbjct: 377 PVTWDTETTSLDPIEATLVGIGCCW--GHQSTDVAYIPLNHTEGEQLPQ----------- 423

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                   + + +                N KFD   +  +  ++           DT+ 
Sbjct: 424 --------TEVLAALRSILESDQYPKAFQNTKFDRIVLLHQGIQLAGVVF------DTML 469

Query: 129 IARRKHPSSRNDLNSLCKRY---------------------GITISHRSKHGALLDSHLL 167
            +    P   + L+ LC RY                      + IS R  H   +D++  
Sbjct: 470 ASYVLRPEDSHKLSDLCHRYLENIKSLNYKDLEIPKTQTIANLDIS-RVAHYCGMDAYAT 528

Query: 168 SDVYIKMMV 176
             +  K++ 
Sbjct: 529 FKLVPKLLA 537


>gi|268577615|ref|XP_002643790.1| Hypothetical protein CBG02001 [Caenorhabditis briggsae]
 gi|187037742|emb|CAP23179.1| hypothetical protein CBG_02001 [Caenorhabditis briggsae AF16]
          Length = 299

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 72/195 (36%), Gaps = 23/195 (11%)

Query: 10  IVFDIETTGLDSKND---RIIEIGAVELLDYSKTNRT---FQVFLCPNGRK-NSPEALKL 62
           ++ D E T      D    II+     L    K  R    F  ++ P      +    +L
Sbjct: 13  LILDFEATCEKDNYDYPPEIIQFSVAVLNTREKIIREDVSFNKYVRPVINPQLTDFCAEL 72

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDP 117
            GI  + +    +F  ++ +F  + N+ N       ++  +++ D+         +NK P
Sbjct: 73  TGINQDTIDKADTFPEVYDQFTAWLNKHNIQEKRFAFVC-DSRQDMWRFAQYQFLLNKQP 131

Query: 118 LDP-SRIIDTL--------SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           L    R    L          A+++     + +  +   Y I  +  + H A+ +   L+
Sbjct: 132 LPTIFRQWVNLGHLYEQDFRKAQQQDIWGPSFIEKMSGFYNIPFNGHN-HNAMDECAFLA 190

Query: 169 DVYIKMMVGGSQINF 183
            V  +++  G+ +N 
Sbjct: 191 KVTKRVLDDGNLVNI 205


>gi|302398687|gb|ADL36638.1| C2H2L domain class transcription factor [Malus x domestica]
          Length = 351

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 44/151 (29%), Gaps = 36/151 (23%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF------------NEQN 91
           FQ ++ P     +    +  GI  E+L+D      +  +  DF               + 
Sbjct: 164 FQSYVKP-LLPVTNYRYETTGIRPEYLRDAMPLRQVQKKIQDFLCNGEPMWKIRPRGGKA 222

Query: 92  AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRY-- 148
              + H    D+  +  E  ++           DT         S   N L  L + Y  
Sbjct: 223 RILVGHGLDHDLDSLQFEYPQVMIR--------DTAKYPPLMKTSKLSNSLKYLTQAYLG 274

Query: 149 -----GITISHRSKHGALLDSHLLSDVYIKM 174
                GI   +        D      +Y++M
Sbjct: 275 YEIQTGIQDPYE-------DCVATMKLYMRM 298


>gi|237798271|ref|ZP_04586732.1| oligoribonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021123|gb|EGI01180.1| oligoribonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 178

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 58/180 (32%), Gaps = 39/180 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNG----- 52
            +NK   I  D+E TGLD   D IIE+  +       T+           +  +      
Sbjct: 1   MQNKQNLIWIDLEMTGLDPDTDVIIEMATI------ITDSELNTLAEGPVIAVHQSDETL 54

Query: 53  RKNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGF 105
            K      + H   G+T    +   S +   ++  +F      E+++    ++   D  F
Sbjct: 55  AKMDEWNTRQHGGSGLTQRVRESTISMADAEAQTLEFIKLWVPERSSPICGNSICQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGALLD 163
           +   +  +       +  + T              L  L  R+   +     S H AL D
Sbjct: 115 LYRHMPTLENYFHYRNLDVST--------------LKELAARWSPELKFKKGSTHLALDD 160


>gi|311087943|gb|ADP68022.1| oligoribonuclease [Buchnera aphidicola str. JF98 (Acyrthosiphon
           pisum)]
          Length = 178

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 56/176 (31%), Gaps = 27/176 (15%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNR---------TFQVFLCPN 51
           ++ NK   I  D+E TGL+ K  RIIEI   +   + +                + +   
Sbjct: 1   MKINKKNLIWIDLEMTGLNPKVHRIIEIATLITDTNLNIIAEGPVIPIYQKKEHILVMDE 60

Query: 52  GRKNSPEALKLHGITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
             K   E    +G+     K    ++ +          +   Q +    ++   D  F+ 
Sbjct: 61  WNKRIHEN---NGLIKRVEKSLYNEQKAEHETILFLKKWVPIQVSPMCGNSIAQDRRFLF 117

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  +  +     R ID  +I    +  +   L+               H AL D
Sbjct: 118 QYMPHL--ENYFHYRYIDVSTIKELAYRWNPLILDK--------FKKNHHHKALED 163


>gi|242209587|ref|XP_002470640.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730319|gb|EED84178.1| predicted protein [Postia placenta Mad-698-R]
          Length = 320

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 27/111 (24%)

Query: 9   KIVFDIE------TTGLDSKNDRIIE--IGAVELLDYS--------KTNRTFQVFLCPNG 52
            +V D+E      T   D   + IIE  +  +   D          +    ++ F+ P  
Sbjct: 102 FLVLDVEGTCVEGTARFDYP-NEIIEWPVCLLRWKDKDHNGLAKELEVVDEYRSFVKPTW 160

Query: 53  RK-NSPEALKLHGITD---------EFLKDKPSFSSIFSEFWDFFNEQNAE 93
           R   S     L GIT            +   P+F+++   F  F  +    
Sbjct: 161 RPRLSDFCTNLTGITQLSSVSLAMQAQVNGAPTFTTLLESFTAFLEKHGLI 211


>gi|47214538|emb|CAG04558.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 303

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 24/173 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + +  D E  G   K   + ++G  +V   D       +  F+ P     +    +  GI
Sbjct: 133 KYLALDCEMVGSGPKG-SVSQLGRCSVVSYDGDVV---YDKFIKPP-VPVTNYRTRWSGI 187

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
               L +   +++   E       +    I H    D   ++            P+   D
Sbjct: 188 RPRNLANATPYAAARKEILRLLAGK--VVIGHAVHNDFKVLSYCH--------PPALTRD 237

Query: 126 T----LSIARR-KHPSSRNDLNSLCKR-YGITI-SHRSKHGALLDSHLLSDVY 171
           T    L  A+     +    L  L K  +   I + +  H ++ D+    ++Y
Sbjct: 238 TSRIPLLNAKAGLAATECASLKRLTKAIFNRDIQTGKGGHSSVEDARATMELY 290


>gi|87121491|ref|ZP_01077380.1| exodeoxyribonuclease I [Marinomonas sp. MED121]
 gi|86163334|gb|EAQ64610.1| exodeoxyribonuclease I [Marinomonas sp. MED121]
          Length = 457

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 25/154 (16%)

Query: 51  NGRKNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINA 108
                 P+A  L GI+ +   ++    +   +     F       + +N+ +FD   +  
Sbjct: 27  EDVLPHPDACLLTGISPQDANREGYPETEFMAMIEKEFATPGTCALGYNSIRFDDEVVRF 86

Query: 109 ELQRINKDPL--------DPSRIIDTLSIARRKHPSSRN-----------DLNSLCKRYG 149
              R   DP             IID + +     P   N            L  L K   
Sbjct: 87  GFYRNFIDPYAREWQNACSRWDIIDLVRMCYAIRPEGINWPKNEDGQVSLKLEDLTKA-- 144

Query: 150 ITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
             I+H   H AL D +   ++    ++   Q   
Sbjct: 145 NDIAHEQAHDALSDVYGTIEM--AKLIKQKQPKL 176


>gi|221487325|gb|EEE25557.1| oligoribonuclease protein, putative [Toxoplasma gondii GT1]
          Length = 367

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 54/168 (32%), Gaps = 25/168 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDY---SKTNRTFQVFLCPNGRK-NSPEALKLH- 63
            +  D E TGLD + D+IIEI  +                V               K H 
Sbjct: 192 IVWVDCEMTGLDVETDQIIEIAVIVTDGQCKKRIVGPNLIVHASDELLDGMDEWCKKTHG 251

Query: 64  --GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINKD 116
             G+T    K   + +    +  +F  +     + A    ++   D  F+  ++ R+   
Sbjct: 252 ESGLTAACRKSTLTLADAEEQILEFVQKHVATTRVAPLGGNSVHVDRQFLVKQMPRLIAH 311

Query: 117 PLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                  + T+  +A R  P        L K+        + H AL D
Sbjct: 312 LSYRIIDVSTIKELAMRWKPELP-----LVKKA-------ANHRALED 347


>gi|169634394|ref|YP_001708130.1| oligoribonuclease [Acinetobacter baumannii SDF]
 gi|169797233|ref|YP_001715026.1| oligoribonuclease [Acinetobacter baumannii AYE]
 gi|213155973|ref|YP_002318018.1| oligoribonuclease Orn [Acinetobacter baumannii AB0057]
 gi|215484674|ref|YP_002326909.1| Oligoribonuclease [Acinetobacter baumannii AB307-0294]
 gi|229577105|ref|YP_001083587.2| oligoribonuclease [Acinetobacter baumannii ATCC 17978]
 gi|239500755|ref|ZP_04660065.1| oligoribonuclease [Acinetobacter baumannii AB900]
 gi|293610306|ref|ZP_06692607.1| oligoribonuclease [Acinetobacter sp. SH024]
 gi|301346492|ref|ZP_07227233.1| oligoribonuclease [Acinetobacter baumannii AB056]
 gi|301509982|ref|ZP_07235219.1| oligoribonuclease [Acinetobacter baumannii AB058]
 gi|301594203|ref|ZP_07239211.1| oligoribonuclease [Acinetobacter baumannii AB059]
 gi|332851262|ref|ZP_08433335.1| oligoribonuclease [Acinetobacter baumannii 6013150]
 gi|332866131|ref|ZP_08436846.1| oligoribonuclease [Acinetobacter baumannii 6013113]
 gi|332874063|ref|ZP_08441998.1| oligoribonuclease [Acinetobacter baumannii 6014059]
 gi|169150160|emb|CAM88054.1| oligoribonuclease [Acinetobacter baumannii AYE]
 gi|169153186|emb|CAP02276.1| oligoribonuclease [Acinetobacter baumannii]
 gi|193076335|gb|ABO10985.2| oligoribonuclease [Acinetobacter baumannii ATCC 17978]
 gi|213055133|gb|ACJ40035.1| oligoribonuclease Orn [Acinetobacter baumannii AB0057]
 gi|213985933|gb|ACJ56232.1| Oligoribonuclease [Acinetobacter baumannii AB307-0294]
 gi|292827538|gb|EFF85902.1| oligoribonuclease [Acinetobacter sp. SH024]
 gi|322506755|gb|ADX02209.1| Oligoribonuclease [Acinetobacter baumannii 1656-2]
 gi|323516626|gb|ADX91007.1| oligoribonuclease [Acinetobacter baumannii TCDC-AB0715]
 gi|325124507|gb|ADY84030.1| oligoribonuclease [Acinetobacter calcoaceticus PHEA-2]
 gi|332730142|gb|EGJ61469.1| oligoribonuclease [Acinetobacter baumannii 6013150]
 gi|332734772|gb|EGJ65866.1| oligoribonuclease [Acinetobacter baumannii 6013113]
 gi|332737804|gb|EGJ68696.1| oligoribonuclease [Acinetobacter baumannii 6014059]
          Length = 188

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 23/175 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRK---NS 56
           M      R I  D+E TGLD+ ND+IIEI  +   D+        V  +    R      
Sbjct: 1   MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNVLAEGPVLAIHQPDRILNAMD 60

Query: 57  PEALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
               + HG       +    L  + +          + N + +    ++   D  F++  
Sbjct: 61  EWNTRQHGQSGLIERVRRSKLTARDAELQTLEFLKKWVNPKVSPMCGNSICQDRRFLHRL 120

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + +     +  + T+  +++R  P   + L              + H A+ D
Sbjct: 121 MPELEQYFHYRNLDVSTVKELSKRWRPEIMSGLKK-----------NASHLAMDD 164


>gi|154308777|ref|XP_001553724.1| hypothetical protein BC1G_07811 [Botryotinia fuckeliana B05.10]
 gi|150852762|gb|EDN27954.1| hypothetical protein BC1G_07811 [Botryotinia fuckeliana B05.10]
          Length = 753

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 60/176 (34%), Gaps = 35/176 (19%)

Query: 8   RKI-VFDIET--TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           R+I   D E   TG +  +  +  I  V        +      + P  +       +  G
Sbjct: 330 REIFAMDCEMCMTGKNEFS--LTRISIVGWDGSVVLDE----LVKPE-KPIIDYLTQYSG 382

Query: 65  ITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           IT+E L   P   +   I     + F+ +    I H+   D+  +           L   
Sbjct: 383 ITEEML--APVTTTLQDIQKRLVELFHPR-TILIGHSLDSDLKALK----------LTHP 429

Query: 122 RIIDTLSIARRKHPSSR---NDLNSLCKRY---GITISHRSK-HGALLDSHLLSDV 170
            IIDT  I    HP  R   + L  L ++Y    I   H +  H +  D+    D+
Sbjct: 430 YIIDTAVIYP--HPRGRPLKSSLKWLAQKYLGKEIQKGHGATGHDSTEDARTCLDL 483


>gi|170717217|ref|YP_001784337.1| oligoribonuclease [Haemophilus somnus 2336]
 gi|168825346|gb|ACA30717.1| Exonuclease RNase T and DNA polymerase III [Haemophilus somnus
           2336]
          Length = 184

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 56/178 (31%), Gaps = 31/178 (17%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNGR 53
           ++ +K   I  D+E TGLD   +RIIEI  +                       L     
Sbjct: 1   MQLDKQNLIWIDLEMTGLDPDKERIIEIATIVTDKDLNILAEGPVLAIHQSNELLN---- 56

Query: 54  KNSPEALKLH---GIT----DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
             +   +K H   G+     +  L ++ +          +  +  +    ++   D  F+
Sbjct: 57  NMNEWCVKTHTSNGLIERVKNSKLTERAAELQTLDFLKKWVPKGVSPICGNSVAQDKRFL 116

Query: 107 NAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              +  + +        + TL  +A R  P   N               ++ H AL D
Sbjct: 117 INYMPELAEYFHYRHLDVSTLKELASRWKPEILNS-----------FEKKNSHLALDD 163


>gi|291563157|emb|CBL41973.1| DNA polymerase family B, exonuclease domain [butyrate-producing
           bacterium SS3/4]
          Length = 359

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 28/132 (21%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + + FDIETTG  +  + +  IG +         R  Q F                    
Sbjct: 24  KLVFFDIETTGFSADYNTVYLIGCIWPEGDHL--RFIQWFAD------------------ 63

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDT 126
                K + + + + F+ F  +     +  N   FD+ F+    + +   P   S  +++
Sbjct: 64  ----TKAAEADVLTAFFYFIKDFRT-LVHFNGDMFDIPFVTKRAKALKLTPAFDS--VES 116

Query: 127 LSIARRKHPSSR 138
           + I RR  P  +
Sbjct: 117 VDIFRRIKPFKK 128


>gi|170290301|ref|YP_001737117.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Korarchaeum cryptofilum OPF8]
 gi|170174381|gb|ACB07434.1| DEAD/DEAH box helicase domain protein [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 1382

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 38/169 (22%)

Query: 12  FDIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            DIET   + + D   R I + A+   D+ +  R     L     + S            
Sbjct: 116 LDIET---EIEYDKKPREIGLIALRSSDWKELAR-----LNIKPEEISE----------- 156

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
                 ++ SI   F      +    + HN   FD+  + +             R IDT 
Sbjct: 157 ------TYGSIPQAFLSKLIRRFRVLVGHNIYSFDIDVLRSWGVHFG-----DVRFIDTY 205

Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           ++A    P +  + L  L   + +     + H A  D+H    +  K++
Sbjct: 206 ALALISVPEALSHSLEGLSFLFKVDY---TPHRADEDAHASLTILPKLI 251


>gi|320321892|gb|EFW77988.1| oligoribonuclease [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331003|gb|EFW86977.1| oligoribonuclease [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330872242|gb|EGH06391.1| oligoribonuclease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 178

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 58/180 (32%), Gaps = 39/180 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNG----- 52
            +NK   I  D+E TGLD   D IIE+  +       T+           +  +      
Sbjct: 1   MQNKQNLIWIDLEMTGLDPDTDVIIEMATI------ITDSELNTLAEGPVIAVHQSDETL 54

Query: 53  RKNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGF 105
            K      + H   G+T    +   + +   ++  +F      E+++    ++   D  F
Sbjct: 55  AKMDEWNTRQHGGSGLTQRVRESTINMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGALLD 163
           +   +  +       +  + T              L  L  R+   +     S H AL D
Sbjct: 115 LYRHMPTLENYFHYRNLDVST--------------LKELAARWSPELKFKKGSTHLALDD 160


>gi|313905521|ref|ZP_07838884.1| hypothetical protein EubceDRAFT_1599 [Eubacterium cellulosolvens 6]
 gi|313469584|gb|EFR64923.1| hypothetical protein EubceDRAFT_1599 [Eubacterium cellulosolvens 6]
          Length = 414

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 15/160 (9%)

Query: 16  TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPS 75
           TT    K    +EI AV + D     + +  F+ P      P+ +K     ++ +K  P 
Sbjct: 268 TTEYYLKVKETVEINAVRVSDGEI--KEYHSFVYPLNMPKKPKYVK-----EDDIKSAPL 320

Query: 76  FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK-H 134
               F EF  F           + +       + L R +      + I D +        
Sbjct: 321 IKDAFGEFMQFVGNDVLAIAGFDEQKKY---LSRLARYSMMDHIDNEIFDVVEYGEDISD 377

Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             S    ++L ++Y +          +  +     +  KM
Sbjct: 378 DFSSYTRSTLLEKYNVNEGTTG----MEKAEATMRLVEKM 413


>gi|149235658|ref|XP_001523707.1| oligoribonuclease, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146452686|gb|EDK46942.1| oligoribonuclease, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 269

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 56/183 (30%), Gaps = 35/183 (19%)

Query: 2   IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGR---K 54
            +K K   +  D E TGLD    DRIIEI  +   +  +       ++  +        K
Sbjct: 70  TKKPKRPLVWVDCEMTGLDVLGEDRIIEICCIVTDENLEVLGNGDYYESTIYYPQETLDK 129

Query: 55  NSPEALKLHG-------ITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFD 102
                   HG       I D   +   +   + +E  +F        +      ++   D
Sbjct: 130 MDEWCQTTHGQLGLIQRILDNPDR---TLEKVQAELLEFLKKYISGPKIGIMAGNSVHMD 186

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGA 160
             F+  ++  I        R++D  SI        R+   L  L             H A
Sbjct: 187 KFFMMKDMPEI--VEFLHYRLLDVSSI---MEFGKRHAPKLMDL------QPDKIQSHTA 235

Query: 161 LLD 163
             D
Sbjct: 236 KSD 238


>gi|60098799|emb|CAH65230.1| hypothetical protein RCJMB04_10a23 [Gallus gallus]
          Length = 1128

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D + D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 266 LAFDIETTKLPLKFPDPETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 324

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKDPL-- 118
                  + ++P  + +   +++   E +    + +N   FD  F+ A       +    
Sbjct: 325 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIIVTYNGDFFDWPFVEARAAAHGINMYQE 380

Query: 119 -------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 381 IGFQKDSQGEYKASQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEEMCR 440

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 441 MATEEPQTLATYSVSDAVATYYMYMKYV 468


>gi|262280955|ref|ZP_06058738.1| oligoribonuclease [Acinetobacter calcoaceticus RUH2202]
 gi|262257855|gb|EEY76590.1| oligoribonuclease [Acinetobacter calcoaceticus RUH2202]
          Length = 188

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 23/175 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRK---NS 56
           M      R I  D+E TGLD+ ND+IIEI  +   D         V  +    R      
Sbjct: 1   MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDNLNVLAEGPVLAVHQPDRILNAMD 60

Query: 57  PEALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
               + HG       +    L  + +          + N + +    ++   D  F++  
Sbjct: 61  EWNTRQHGQSGLVERVRRSKLTARDAELQTLEFLKKWVNPKVSPMCGNSICQDRRFLHRL 120

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + +     +  + T+  +++R  P   + L              + H A+ D
Sbjct: 121 MPELEQYFHYRNLDVSTVKELSKRWRPEIMSGLKK-----------NASHLAMDD 164


>gi|257056841|ref|YP_003134673.1| oligoribonuclease (3'->5' exoribonuclease) [Saccharomonospora
           viridis DSM 43017]
 gi|256586713|gb|ACU97846.1| oligoribonuclease (3'->5' exoribonuclease) [Saccharomonospora
           viridis DSM 43017]
          Length = 202

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 59/171 (34%), Gaps = 27/171 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG---RKNSPEALKLH 63
           R +  D E TGLD   D +IEI   V   + +       + +  +            ++H
Sbjct: 4   RLVWIDCEMTGLDLAKDALIEIAVLVTDAELNVLGDGVDLVIHADDEALANMPDVVREMH 63

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINK 115
              G+T+E  +   +          +  E     + A    ++   D GFI  ++  +  
Sbjct: 64  ARSGLTEEVRRSTMTLEEAERRALAYIREHVPEPKTAPLAGNSIATDRGFIARDMPTL-- 121

Query: 116 DPLDPSRIIDTLSIA---RRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           D     R++D  SI    RR +P          + Y         H AL D
Sbjct: 122 DSYLHYRMVDVSSIKELIRRWYP----------RIYYAKPEKGLAHRALAD 162


>gi|255653046|ref|NP_001157435.1| exonuclease NEF-sp [Equus caballus]
          Length = 775

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 53/171 (30%), Gaps = 29/171 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E   L SK   +  I  V        +      + P+ R          GIT + L 
Sbjct: 232 LDCEMC-LTSKGRELTRISLVAEGGCCVMDE----LVKPDNRILDYL-TSFSGITKKIL- 284

Query: 72  DKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             P       +  +        +A  + H+  FD+  +                +IDT S
Sbjct: 285 -NPVTTRLKDVQRQLKALL-PPDAVLVGHSLDFDLRALKMI----------HPYVIDT-S 331

Query: 129 IARRKHPSSRNDLNSLCKR-YG--ITISHRSKHGALLDSHLLSDV---YIK 173
           +   +    R  L  L K   G  I    R  H A  D+    ++   ++K
Sbjct: 332 LLYVREQGRRFKLKFLAKAILGKDIQCPDRLGHDATEDARTTLELARYFLK 382


>gi|159903755|ref|YP_001551099.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
 gi|159888931|gb|ABX09145.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
          Length = 985

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 31/157 (19%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + ++ +  D ETT L+     ++ IG                   P      P    L  
Sbjct: 382 DPIQPVAIDTETTSLNPFQSELVGIGLCWGE-------------RPEQIAYIP----LGH 424

Query: 65  ITDEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPL 118
           IT++  +D     +     +      +        +  NAK+D + F+   +        
Sbjct: 425 ITEDLFEDQSSNLQLPLIDVIKGLSPWLGSSEHPKVLQNAKYDRLIFLQYGIPLEGV--- 481

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKR-YGITISH 154
               I+DTL        + R+ L ++ KR +G T ++
Sbjct: 482 ----IMDTLLADYLCDVTHRHSLEAMAKREFGFTPTN 514


>gi|294658619|ref|XP_460964.2| DEHA2F13816p [Debaryomyces hansenii CBS767]
 gi|202953263|emb|CAG89322.2| DEHA2F13816p [Debaryomyces hansenii]
          Length = 327

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 67/182 (36%), Gaps = 32/182 (17%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIG-AVELLDYS-----KTNRTFQVFL--------- 48
             K   I  DIE    +   +++ EIG AV   +        T + F + +         
Sbjct: 94  LRKKILIAIDIEA--WERNINKVTEIGIAVYNPNGQFYSLLPTVQQFHILIREHEKMYNG 151

Query: 49  --CPNGRKNSPEALKLHGITDEFLKDKPSF-SSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
             CPN + N    +         L +   F  S+ ++ +   +E+    + H+ + D+ +
Sbjct: 152 RYCPNNKSNFMGGVSYT----LDLAESKKFVESVINK-YSCESEEGIVLVGHHIEGDLKW 206

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           + +    I  +      I+DT  I R  + S    L  + +   + I H   H A  D++
Sbjct: 207 LRS----IGIELPHNVPIVDTARIHRLSYESG-GSLRGILR--NVGIPHGYLHNAANDAY 259

Query: 166 LL 167
             
Sbjct: 260 YT 261


>gi|187776159|ref|ZP_02992855.1| exonuclease family protein [Escherichia coli O157:H7 str. EC4196]
 gi|188025029|ref|ZP_02997335.1| exonuclease family protein [Escherichia coli O157:H7 str. EC4113]
 gi|189010807|ref|ZP_03006464.1| exonuclease family protein [Escherichia coli O157:H7 str. EC4076]
 gi|189406038|ref|ZP_03008047.1| exonuclease family protein [Escherichia coli O157:H7 str. EC508]
 gi|208810562|ref|ZP_03252438.1| exonuclease family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208816977|ref|ZP_03258097.1| exonuclease family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208821780|ref|ZP_03262100.1| exonuclease family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209397980|ref|YP_002270650.1| exonuclease family protein [Escherichia coli O157:H7 str. EC4115]
 gi|254793196|ref|YP_003078033.1| exodeoxyribonuclease encoded by cryptic prophage CP-933P
           [Escherichia coli O157:H7 str. TW14359]
 gi|187768713|gb|EDU32557.1| exonuclease family protein [Escherichia coli O157:H7 str. EC4196]
 gi|188015233|gb|EDU53355.1| exonuclease family protein [Escherichia coli O157:H7 str. EC4113]
 gi|188998397|gb|EDU67420.1| exonuclease family protein [Escherichia coli O157:H7 str. EC4076]
 gi|189376922|gb|EDU95338.1| exonuclease family protein [Escherichia coli O157:H7 str. EC508]
 gi|208725078|gb|EDZ74785.1| exonuclease family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208731320|gb|EDZ80009.1| exonuclease family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208741903|gb|EDZ89585.1| exonuclease family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209159380|gb|ACI36813.1| exonuclease family protein [Escherichia coli O157:H7 str. EC4115]
 gi|254592596|gb|ACT71957.1| exodeoxyribonuclease encoded by cryptic prophage CP-933P
           [Escherichia coli O157:H7 str. TW14359]
          Length = 460

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 45/195 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAV--------------ELLD----YSKTNR-TFQVFLCPNG 52
            D+ET G +  +  II IGA+              + +D        +R T + +L  + 
Sbjct: 282 IDLETMGKNP-DAPIISIGAIFFDPQTGDMGPEFSKTIDLDTAGGVIDRDTMKWWLKQSR 340

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINA 108
              S               D+        +  +F +E + E+  H       FD   +  
Sbjct: 341 EAQSAIMT-----------DEIPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILRR 389

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             +R       P R  +   +          D ++   R  I      +H AL D+   +
Sbjct: 390 SYERQGSP--CPWRYYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDARYQA 443

Query: 169 D----VYIKMMVGGS 179
                ++ K++   +
Sbjct: 444 KYVSAIWQKLIPSQA 458


>gi|195938967|ref|ZP_03084349.1| hypothetical protein EscherichcoliO157_21497 [Escherichia coli
           O157:H7 str. EC4024]
          Length = 489

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 45/195 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAV--------------ELLD----YSKTNR-TFQVFLCPNG 52
            D+ET G +  +  II IGA+              + +D        +R T + +L  + 
Sbjct: 311 IDLETMGKNP-DAPIISIGAIFFDPQTGDMGPEFSKTIDLDTAGGVIDRDTMKWWLKQSR 369

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINA 108
              S               D+        +  +F +E + E+  H       FD   +  
Sbjct: 370 EAQSAIMT-----------DEIPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILRR 418

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             +R       P R  +   +          D ++   R  I      +H AL D+   +
Sbjct: 419 SYERQGSP--CPWRYYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDARYQA 472

Query: 169 D----VYIKMMVGGS 179
                ++ K++   +
Sbjct: 473 KYVSAIWQKLIPSQA 487


>gi|330879830|gb|EGH13979.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 143

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 9   KIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLH 63
            +V D+E T    G       +IEIGA  +    +    F+ F+ P  R   +    +L 
Sbjct: 4   WLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFERFVRPARRPVLTHFCRELT 63

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
            I    +      ++++ +F  + +   A  +   +  D 
Sbjct: 64  HINQSSIDSAAPLTTVWPQFERWLSHHRARVLGWASWGDY 103


>gi|320197759|gb|EFW72367.1| exonuclease family protein [Escherichia coli EC4100B]
          Length = 823

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 45/195 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAV--------------ELLD----YSKTNR-TFQVFLCPNG 52
            D+ET G +  +  II IGA+              + +D        +R T + +L  + 
Sbjct: 645 IDLETMGKNP-DAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIKWWLKQSR 703

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINA 108
              S               D+        +  +F +E + E+  H       FD   +  
Sbjct: 704 EAQSAIMT-----------DEIPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILRR 752

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             +R       P R  +   +          D ++   R  I      +H AL D+   +
Sbjct: 753 SYERQGIP--CPWRYYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDARYQA 806

Query: 169 D----VYIKMMVGGS 179
                ++ K++   +
Sbjct: 807 KYVSAIWQKLIPSQA 821


>gi|213420151|ref|ZP_03353217.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
          str. E01-6750]
          Length = 77

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 3  RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLC 49
          R      +V D+ET G ++K D ++EI A+ L    +     + T    + 
Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVR 63


>gi|213023524|ref|ZP_03337971.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 131

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 7/109 (6%)

Query: 1   MIRKN---KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS 56
           M  KN   +   +  D ET G     DR  +  A+    D++        +  P      
Sbjct: 1   MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLP 60

Query: 57  -PEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNA-KFD 102
            P A+ + GIT +  ++K  + ++        F       + +N  +FD
Sbjct: 61  QPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFD 109


>gi|297204442|ref|ZP_06921839.1| exonuclease superfamily protein [Streptomyces sviceus ATCC 29083]
 gi|297148690|gb|EFH29078.1| exonuclease superfamily protein [Streptomyces sviceus ATCC 29083]
          Length = 189

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 58/176 (32%), Gaps = 19/176 (10%)

Query: 11  VFDIETT---GLDSKND--RIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           V D+E T   G    +    IIEIG   V+L    +  R  ++ + P   + S    +L 
Sbjct: 12  VVDVEATCWPGSPPPHAISEIIEIGLTVVDLSTAERVERH-RILVRPARSEVSDFCTELT 70

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G+T + +    SF           +   A   A    +D      +            R 
Sbjct: 71  GLTQDEVDGGLSFGEACRRLASE-HASGARPWASWGDYDRNQFTRQCGATKTPYPFGRRH 129

Query: 124 ID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            +     T     RK P     L       G+++  R  H    D+  ++ + + +
Sbjct: 130 TNAKAVFTEVYGLRKRPGMAQALG----MAGLSLDGR-HHRGEDDAWNIAALVLHL 180


>gi|196248455|ref|ZP_03147156.1| conserved hypothetical protein [Geobacillus sp. G11MC16]
 gi|196212180|gb|EDY06938.1| conserved hypothetical protein [Geobacillus sp. G11MC16]
          Length = 112

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 3   RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           R   +  ++ D+ETTG    + D I+ + A + ++   T  T+   +  N  +N 
Sbjct: 56  RLTDIPFVIIDMETTGFSPQQGDEILAMAAAKTVNGLVTG-TYMTLVKRNRFRNI 109


>gi|332290039|ref|YP_004420891.1| oligoribonuclease [Gallibacterium anatis UMN179]
 gi|330432935|gb|AEC17994.1| oligoribonuclease [Gallibacterium anatis UMN179]
          Length = 182

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          ++ +K   I  D+E TGLD   DRIIEI  +        
Sbjct: 1  MQLDKQNLIWIDLEMTGLDPNKDRIIEIATIVTDKNLNI 39


>gi|190346543|gb|EDK38650.2| hypothetical protein PGUG_02748 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 310

 Score = 45.6 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 13/170 (7%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +K+  + +  D E  G+  +      +  V  +++      +  F+ P  +        +
Sbjct: 136 KKDIGKYVALDCEFVGVGPEGTE-SALARVSFVNFYGHV-IYDRFVRPREKVTDWR-TWV 192

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G+T + + D  SF     E       +    I H    D+  +     R          
Sbjct: 193 SGVTAQHMTDAISFDEAQKEASKILETR--ILIGHAVHHDLDSLFLSHPRFQIRDTSKFG 250

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVY 171
               +S  R         L  L K +  + I   S H ++ D+     +Y
Sbjct: 251 PFRAISNGRT------PSLKKLIKHFLKMDIQDGS-HSSVEDAQATMLLY 293


>gi|291619097|ref|YP_003521839.1| Orn [Pantoea ananatis LMG 20103]
 gi|291154127|gb|ADD78711.1| Orn [Pantoea ananatis LMG 20103]
 gi|327395429|dbj|BAK12851.1| oligoribonuclease Orn [Pantoea ananatis AJ13355]
          Length = 194

 Score = 45.2 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          M   N+   I  D+E TGLD + DRIIEI  +
Sbjct: 13 MATGNENNLIWIDLEMTGLDPERDRIIEIATI 44


>gi|56461400|ref|YP_156681.1| oligoribonuclease [Idiomarina loihiensis L2TR]
 gi|81821669|sp|Q5QVW2|ORN_IDILO RecName: Full=Oligoribonuclease
 gi|56180410|gb|AAV83132.1| Oligoribonuclease (3'->5' exoribonuclease) [Idiomarina loihiensis
           L2TR]
          Length = 183

 Score = 45.2 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 60/186 (32%), Gaps = 44/186 (23%)

Query: 1   MIRKNK-MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPE 58
           M   NK  R I  D+E TGL+   + IIE+  +       T+         P    + P+
Sbjct: 1   MTEDNKKQRLIWIDLEMTGLEPDENHIIEVATI------VTDAQLNTLAEGPVIAVHQPQ 54

Query: 59  ALKLHGITDEFLK-----------------DKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101
              L  + D  +K                 ++ + +        + +   +    ++   
Sbjct: 55  K-HLDRMDDWNVKTHTGSGLVERVKESQHDERKAAAETIEFLRQYIDAGVSPMCGNSICQ 113

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH----RSK 157
           D  F+   +  +  +     R +D             + L  L KR+   +++       
Sbjct: 114 DRRFLAKHMPEL--EAFFHYRNLDV------------STLKELAKRWNPEVANSFKKSGA 159

Query: 158 HGALLD 163
           H AL D
Sbjct: 160 HEALAD 165


>gi|294789770|ref|ZP_06755000.1| oligoribonuclease [Simonsiella muelleri ATCC 29453]
 gi|294482276|gb|EFG29973.1| oligoribonuclease [Simonsiella muelleri ATCC 29453]
          Length = 184

 Score = 45.2 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 25/174 (14%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--------LCPNGRK 54
            KN+      D+E TGL+  +D+IIEI  +            +V+        L    + 
Sbjct: 1   MKNQNNLCWLDMEMTGLNPDSDKIIEIAMIITDSNLNVLAQSEVYAIHQSDEILNNMDKW 60

Query: 55  NSPEALKLHGITDEFLKDKP-SFSSIFSEFWDF----FNEQNAEWIAHNAKFDVGFINAE 109
           N+    +  G+  E +K    + + + +E   F      E+      +    D  F+   
Sbjct: 61  NTDTHTR-TGLV-ERVKSSTYTETQVETELLQFMQTWLPEKATPMCGNTIHQDRRFMVRH 118

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + ++       +  + T+    R+   +              +  +  H AL D
Sbjct: 119 MPKLENYFHYRNLDVSTIKELARRWSPAVYK----------GVVKKGSHKALDD 162


>gi|167854572|ref|ZP_02477353.1| oligoribonuclease [Haemophilus parasuis 29755]
 gi|167854327|gb|EDS25560.1| oligoribonuclease [Haemophilus parasuis 29755]
          Length = 183

 Score = 45.2 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 29/178 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNG 52
           M +++K   I  D+E TGLD + +RIIEI  +                       L    
Sbjct: 1   MSQQDKQNLIWIDLEMTGLDPEKERIIEIATIITDKDLNILAEGPVLAVHQPDELLN--- 57

Query: 53  RKNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGF 105
            K S   +K H   G+ +   + K +  +   +  DF  +      +    ++   D  F
Sbjct: 58  -KMSEWCVKTHTANGLVERVKQSKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRF 116

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   +  +          + TL     +                   S ++ H AL D
Sbjct: 117 LYKYMPDLADYFHYRHLDVSTLKELASRWKPEMLK----------QFSKKNSHLALDD 164


>gi|119173327|ref|XP_001239135.1| hypothetical protein CIMG_10157 [Coccidioides immitis RS]
          Length = 418

 Score = 45.2 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 65/201 (32%), Gaps = 21/201 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D E     +     + I A++ L  S         + P+ R       K  GIT+  
Sbjct: 194 IALDCEMVSTIAGQH-PVSISAIDYLTGSVLIN---YLIKPSVRVLDWR-TKFSGITEAM 248

Query: 70  LKDK-------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           + +        P + +  +  W +   Q    I  +   D+  +     R+         
Sbjct: 249 VTEAVTNGTALPHWEAARALLWTYMTPQ-TILIGQSLSNDLNALGMVHTRV------VDS 301

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            I T     ++   S   L  LC  + GITI     H +L D+    +V +  +    ++
Sbjct: 302 EILTRHAVGKEFARSW-GLKRLCGLFLGITIQEGEGHDSLEDAFAAREVVLWCLNNTEKL 360

Query: 182 NFGFKTNEDRFFKEEKKTVPN 202
               +   +   +E+      
Sbjct: 361 AAWAEEQRNVLIQEQNAAKER 381


>gi|88603967|ref|YP_504145.1| hypothetical protein Mhun_2731 [Methanospirillum hungatei JF-1]
 gi|88189429|gb|ABD42426.1| conserved hypothetical protein [Methanospirillum hungatei JF-1]
          Length = 361

 Score = 45.2 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 45/140 (32%), Gaps = 30/140 (21%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             DIET G+      +I IG           +  Q  L    R  S E            
Sbjct: 186 FVDIETLGI--FGRPVILIGLGYFRGGELQVK--QYLL----RDISEE------------ 225

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSI 129
              P+ S+   E       ++A  ++ N + FD+ +I   L      PL      D L  
Sbjct: 226 --APALSAFMEEI-----PEDAVLVSFNGRSFDIPYIADRLAYYGLPPLPAMPHYDLLHP 278

Query: 130 ARRKHPS--SRNDLNSLCKR 147
           +RR          L +L  R
Sbjct: 279 SRRLWKHAVPDCRLGTLEAR 298


>gi|125534582|gb|EAY81130.1| hypothetical protein OsI_36313 [Oryza sativa Indica Group]
          Length = 192

 Score = 45.2 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 6/90 (6%)

Query: 9   KIVFDIETT---GLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCP-NGRKNSPEALKL 62
            +V D+E T   G       IIE  +V +      +    F+ ++ P + R+ +    +L
Sbjct: 23  FVVIDLEATCERGRRIYPQEIIEFASVVVDGATGEQLAEAFRAYVRPLHHRELTDYCREL 82

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNA 92
            GI    +               + + +  
Sbjct: 83  TGIAQADVDAGVDLREALRAHDAWLDARGV 112


>gi|120553048|ref|YP_957399.1| hypothetical protein Maqu_0105 [Marinobacter aquaeolei VT8]
 gi|120322897|gb|ABM17212.1| conserved hypothetical protein [Marinobacter aquaeolei VT8]
          Length = 170

 Score = 45.2 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 61/181 (33%), Gaps = 23/181 (12%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEALKL 62
           +       D E + LD      IE+G                 + P+   +  S  A  +
Sbjct: 3   SDFSPAFIDFEASSLDLIASYPIEVGICMPDGAL-----HSWLIQPHVLWQDWSESAETI 57

Query: 63  HGITDE-FLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPL 118
           HGI+ +  L++    S +  +  +   EQ   +A        FD  +++   +   + P 
Sbjct: 58  HGISRQRLLQEGMPVSEVAQQLNELLPEQVFCDA------WTFDSFWLHRLFRAAGEVPA 111

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
                I  L    +    S      + +  G+ +     H A  D+ +L   + +++  G
Sbjct: 112 FQLESISMLLDPDQVRHWSGIRQQVIAE-LGLPV-----HRAANDALILHKTWERVICRG 165

Query: 179 S 179
            
Sbjct: 166 E 166


>gi|71004294|ref|XP_756813.1| hypothetical protein UM00666.1 [Ustilago maydis 521]
 gi|46095601|gb|EAK80834.1| hypothetical protein UM00666.1 [Ustilago maydis 521]
          Length = 419

 Score = 45.2 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 47/160 (29%), Gaps = 35/160 (21%)

Query: 9   KIVFDIETT----------------GLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVF 47
            +V D+E T                G     + IIE   V     E      T   F  +
Sbjct: 62  FLVLDVEATCESTRKYRNLNHGYETGSFQFPNEIIEFPVVLLRWNENTHQLDTVDVFHSY 121

Query: 48  LCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE---WIA----HNA 99
           + P  R   +     L G+T   +   P ++ +   F+ F    +            HN 
Sbjct: 122 VRPTFRPRLTKFCRDLTGVTQAQVDAAPLWNDVLISFYRFLWSYDLVEDTLTGSSHLHNF 181

Query: 100 KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN 139
           +     +   +  IN  P D  R           HP  RN
Sbjct: 182 R-----LRRGVAWINHGPADL-RDFVIKQCWISGHPRDRN 215


>gi|206579385|ref|YP_002240881.1| oligoribonuclease [Klebsiella pneumoniae 342]
 gi|288937537|ref|YP_003441596.1| exonuclease RNase T and DNA polymerase III [Klebsiella variicola
           At-22]
 gi|206568443|gb|ACI10219.1| oligoribonuclease [Klebsiella pneumoniae 342]
 gi|288892246|gb|ADC60564.1| Exonuclease RNase T and DNA polymerase III [Klebsiella variicola
           At-22]
          Length = 181

 Score = 45.2 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 55/174 (31%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFL-CPNGRKNSP 57
           +  N+   I  D+E TGLD + DRIIEI  +             T  V            
Sbjct: 1   MSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDAQLALMDE 60

Query: 58  EALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAEL 110
             ++ H   G+ D       S         +F  +      +    ++   D  F+   +
Sbjct: 61  WNVRTHTGSGLVDRVKASAVSEHDAELATIEFLKQWVPAGKSPICGNSIGQDRRFLFKYM 120

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++          + TL  +ARR  P     L+            +  H A+ D
Sbjct: 121 PQLEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFKKQGTHQAMDD 163


>gi|225159218|ref|ZP_03725521.1| exonuclease RNase T and DNA polymerase III [Opitutaceae bacterium
           TAV2]
 gi|224802220|gb|EEG20489.1| exonuclease RNase T and DNA polymerase III [Opitutaceae bacterium
           TAV2]
          Length = 234

 Score = 45.2 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D E     S    I+E G V L   ++   +      P GR    +  +LHGI  + +
Sbjct: 23  FVDFEG----SLASGILEYGVVTLR-GTQVLGSHTRLCRPTGRVRLAD-RELHGIDPDSV 76

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---------ELQRINKDPLDPS 121
            D   F   F+ F ++         AH A  +   I +         +  R  +   D  
Sbjct: 77  ADCALFHDDFTLFANWRATG--PLAAHFANAENTLIKSVWPYPRSSPDFIRAGEMTTDWG 134

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGI 150
             +DT  +  + +P  + + L  L   +G+
Sbjct: 135 PWLDTGRLYPQIYPGLTSSKLGDLVAAFGL 164


>gi|298675947|ref|YP_003727697.1| hypothetical protein Metev_2074 [Methanohalobium evestigatum
           Z-7303]
 gi|298288935|gb|ADI74901.1| conserved hypothetical protein [Methanohalobium evestigatum Z-7303]
          Length = 254

 Score = 45.2 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 46/148 (31%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIETTGL + +D I  +G     + ++T +TF                 +HGI      
Sbjct: 90  VDIETTGLSNTHDHITVVGVY---NGNQT-KTF-----------------VHGI------ 122

Query: 72  DKPSFSSIFSEF--WDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLS 128
              +   +  E   ++F        + +N   FD+ FI  E   +  + L     +D + 
Sbjct: 123 ---NLDDVADELNKYEFI-------VTYNGACFDLPFIRKEFPELEFNQLH----VDLIY 168

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRS 156
             ++     +  L    ++ GI+ S  +
Sbjct: 169 PLKKL--GYKGGLKQAEEKLGISRSDNT 194


>gi|91773431|ref|YP_566123.1| hypothetical protein Mbur_1466 [Methanococcoides burtonii DSM 6242]
 gi|91712446|gb|ABE52373.1| Hypothetical protein Mbur_1466 [Methanococcoides burtonii DSM 6242]
          Length = 253

 Score = 45.2 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 48/146 (32%), Gaps = 42/146 (28%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIETTGL   +  I  IG  +  D          ++               GI      
Sbjct: 90  VDIETTGLSPSSSYITVIGIYDGEDAK-------TYVK--------------GID----- 123

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                  +  E   +        ++ N A+FD+ FI  E  +I  + L     ID +   
Sbjct: 124 ----LEDVVEELQKY-----ELLVSFNGARFDLPFIQKEYPQIEFNQLH----IDLMYPL 170

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS 156
           RR        L ++ K+  I  +  +
Sbjct: 171 RRI--GLSGGLKAIEKKLEINRTDET 194


>gi|313240588|emb|CBY32916.1| unnamed protein product [Oikopleura dioica]
          Length = 418

 Score = 45.2 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 18/134 (13%)

Query: 45  QVFLCPNGRKNSPEALK----LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK 100
            VF        S E ++    +HGIT E L+ K S + + S+       +N + + H+  
Sbjct: 240 HVFTLYEFCMPSEEIVEMRTPIHGITIEQLEGKQSDAQLKSKIAKIL--KNKKLVGHSVD 297

Query: 101 FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLC-KRYGITISHRSKHG 159
            D+  +  + + +       S  I                L +L   + G+ I  + +H 
Sbjct: 298 KDLAVLGIDHRLVRDTAYKFSWTICP----------KSPSLKNLAMAKLGVEI-QKGEHD 346

Query: 160 ALLDSHLLSDVYIK 173
           +  D+     +Y K
Sbjct: 347 SYEDTLAALMIYAK 360


>gi|13242564|ref|NP_077578.1| EsV-1-93 [Ectocarpus siliculosus virus 1]
 gi|13177367|gb|AAK14511.1|AF204951_93 EsV-1-93 [Ectocarpus siliculosus virus 1]
          Length = 1046

 Score = 45.2 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 67/217 (30%), Gaps = 33/217 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELL--------DYSKTNRTFQVFLCPNGRKNSP 57
            M    +D+ET+GL++  D I +   +           + S T      +          
Sbjct: 204 PMTICSYDLETSGLNTNEDYIFQASMIFSRLGDPCPDSEGSATGHAVDSYTD-GVVICVG 262

Query: 58  EALKLHG----ITDEFLKDKPSFSSIFSEFWDFFNEQNA-EWIAHN-AKFDVGFINAELQ 111
           +   + G    I +  L        +  +F +   E+       +N  KFD  F+    +
Sbjct: 263 DTESVDGTPLLIVENEL-------QLLDKFREILVERGCNILCGYNTFKFDSAFLYKRAE 315

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           R   D       I  L+            L    +   I I  R          +  D++
Sbjct: 316 RYGFDGFKKLSFIKDLACDLEVKTLQSAALGK-NELKQIIIPGR--------VEI--DLF 364

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
           + M       ++      D+FF  +K  V    +L+ 
Sbjct: 365 MVMRRSQKLSSYKLNAVCDKFFGGKKDDVTYADILQA 401


>gi|331231913|ref|XP_003328619.1| RNA exonuclease 4 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309307609|gb|EFP84200.1| RNA exonuclease 4 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 795

 Score = 45.2 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 70/211 (33%), Gaps = 28/211 (13%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
             ++ +  D E   + +    +  +  V+  +       +   + P+ +  +    +  G
Sbjct: 354 RPLKILGVDCEMC-VTAAGSELTRVTIVDADEKLV----YDQLVLPD-QPITDYLTRFSG 407

Query: 65  ITDEFLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           IT+E L+   +    +  +  +   + N   + H+   D+  +           L    +
Sbjct: 408 ITEERLQGITTRLIDVQKKLSELI-DFNTVLVGHSLDCDLKALK----------LAHPWV 456

Query: 124 IDTLSIARRKHPSS---RNDLNSLC-KRYGITISHRSK----HGALLDSHLLSDVYIKMM 175
           IDT  I +  HP     +  L  L  K  G  I         H +  D+     +  K M
Sbjct: 457 IDTSVIYQ--HPRGLPMKPSLKWLASKWLGREIQSNGLPNGGHDSEEDARTAVQLLKKKM 514

Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
             G         NE  F +  +  +P  S L
Sbjct: 515 EKGLGFGEFTSDNESIFERMARGNLPKRSAL 545


>gi|331002347|ref|ZP_08325865.1| hypothetical protein HMPREF0491_00727 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410163|gb|EGG89597.1| hypothetical protein HMPREF0491_00727 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 357

 Score = 45.2 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 27/128 (21%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +++ FDIETTGL  KN  +  IG + +       + +           S E L       
Sbjct: 24  KQLFFDIETTGLSPKNSNLYLIGCISIDGDKLIFKQW------FSESLSEETL------- 70

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRIN-KDPLDPSRIID 125
                      I   F+++    +   I  N   FD+ +I    ++    +PL+  + ID
Sbjct: 71  -----------ILQAFYEYAAGFDT-LIHFNGDGFDLPYIKECAKQYYLFNPLENYKSID 118

Query: 126 TLSIARRK 133
                R  
Sbjct: 119 IYKQIRYL 126


>gi|260549063|ref|ZP_05823284.1| oligoribonuclease Orn [Acinetobacter sp. RUH2624]
 gi|260407791|gb|EEX01263.1| oligoribonuclease Orn [Acinetobacter sp. RUH2624]
          Length = 188

 Score = 45.2 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 23/175 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRK---NS 56
           M      R I  D+E TGLD+ ND+IIEI  +   D+        V  +    R      
Sbjct: 1   MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNVLAEGPVLAIHQPDRILNAMD 60

Query: 57  PEALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
               + HG       +    L  + +          + N + +    ++   D  F++  
Sbjct: 61  EWNTRQHGQSGLIERVRRSKLTARDAELQTLEFLKKWVNPKVSPMCGNSICQDRRFLHRL 120

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + +     +  + T+  +++R  P   + L              + H A+ D
Sbjct: 121 MPELEQYFHYRNLDVSTIKELSKRWRPEIMSGLKK-----------NASHLAMDD 164


>gi|332140274|ref|YP_004426012.1| hypothetical protein MADE_1004330 [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550296|gb|AEA97014.1| hypothetical protein MADE_1004330 [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 167

 Score = 45.2 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 66/178 (37%), Gaps = 29/178 (16%)

Query: 7   MRKI----VFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEAL 60
           MR I    + D+E +G  + +   IEIG V      + K  R +  ++          A 
Sbjct: 1   MRNISLPTIIDVEASGFGAAS-YPIEIGIVRYDGAKWCKLLRPYASWVH-----WDKSAE 54

Query: 61  KLHGITDEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHN--AKFDVGFINAELQRINKDP 117
            LHGI+ + L+ +     ++  E  +F        IA++     D  ++         + 
Sbjct: 55  SLHGISQQMLESRGEEPYTVCMELNNFLGNT----IAYSDGWVVDNPWLIKLYAAAQVEM 110

Query: 118 LDPSRIIDTLSIARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               R ++ +    +       ++ L++      + +    +H A  D+ ++   Y K
Sbjct: 111 SFTCRALEYILTEAQMDKWHEVKDRLSA-----NVDV---KRHRASSDAMIIQQTYAK 160


>gi|157156186|ref|YP_001462864.1| exonuclease family protein [Escherichia coli E24377A]
 gi|157078216|gb|ABV17924.1| exonuclease family protein [Escherichia coli E24377A]
          Length = 825

 Score = 45.2 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 35/190 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALKLHGITDE 68
            D+ET G +  +  II IGA+            F   +     G     + +K       
Sbjct: 647 IDLETMGKNP-DAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIK------W 699

Query: 69  FLK-----------DKPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINAELQRI 113
           +LK           D+        +  +F +E + E+  H       FD   +    +R 
Sbjct: 700 WLKQSREAQSAIMTDEIPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILRRSYERQ 759

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD---- 169
                 P R  +   +          D ++   R  I      +H AL D+   +     
Sbjct: 760 GIP--CPWRYYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDARYQAKYVSA 813

Query: 170 VYIKMMVGGS 179
           ++ K++   +
Sbjct: 814 IWQKLIPSQA 823


>gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004]
 gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus bovienii SS-2004]
          Length = 932

 Score = 45.2 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 88/253 (34%), Gaps = 61/253 (24%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK--NSPEALKLHGITDEF 69
           FD ET GLD+    ++ +     +  S+    +     P G    ++PE L LH      
Sbjct: 354 FDTETDGLDTLTVNLVGMSFAIAVGESEVEAAY----LPLGHDYLDAPEQLDLH------ 403

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                    + +       + N   I  N KFD G +      +N          DT+  
Sbjct: 404 --------EVLAALKPLLEDANLPKIGQNLKFDRGVLARYDVALNGIVF------DTMLE 449

Query: 130 ARRKHP-SSRNDLNSLCKRY----------------------GITISHRSKHGALLDSHL 166
           +   +  S R+D++SL  R+                       I +   +K+ A  D+ +
Sbjct: 450 SYVLNSVSGRHDMDSLADRHLGYKTTTFEEIAGKGKKQLTFNQIPLEEAAKY-AAEDADV 508

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH-- 224
              ++  M     QI+    T +  F   E   VP +S ++R   L   I  + L EH  
Sbjct: 509 TLRLHQVM---YPQID-SVPTLKSVFQNIEMPLVPVLSRIERTGVL---IDAQTLAEHST 561

Query: 225 --DKTIQTLGKNA 235
                +  L K A
Sbjct: 562 EITARLGELEKAA 574


>gi|159463698|ref|XP_001690079.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158284067|gb|EDP09817.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 91

 Score = 45.2 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 25 RIIEIGAVELLDYSKTNR-TFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSE 82
           IIE+  V L  +S   R  FQ ++ P       P  ++L GI    +        +   
Sbjct: 1  EIIELSCVLLDAHSLEVRGEFQAYVRPTEHPLLDPFCVELTGIEQAQVDTAAPLGEVLER 60

Query: 83 FWDFFNEQNA 92
             +   + A
Sbjct: 61 LDGWLRGRGA 70


>gi|167720628|ref|ZP_02403864.1| oligoribonuclease [Burkholderia pseudomallei DM98]
 gi|167903697|ref|ZP_02490902.1| oligoribonuclease [Burkholderia pseudomallei NCTC 13177]
 gi|254181122|ref|ZP_04887720.1| oligoribonuclease [Burkholderia pseudomallei 1655]
 gi|184211661|gb|EDU08704.1| oligoribonuclease [Burkholderia pseudomallei 1655]
          Length = 201

 Score = 45.2 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 56/185 (30%), Gaps = 49/185 (26%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +N++  +  D+E TGLD   DRIIEI  V       TN T    +   G       L +H
Sbjct: 15  RNELNLVWLDMEMTGLDPDTDRIIEIAVV------VTNSTLD--IAVEGPV-----LAIH 61

Query: 64  GITDEFLKDKPSFSS-------IFSEFW------------------DFFNEQNAEWIAHN 98
             +DE L     ++        +                              +    ++
Sbjct: 62  Q-SDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLAQHVPPGKSPMCGNS 120

Query: 99  AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
              D  F+   +  + +     +  + TL    R+   +                 R+ H
Sbjct: 121 ICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMH 170

Query: 159 GALLD 163
            AL D
Sbjct: 171 TALAD 175


>gi|290972546|ref|XP_002669013.1| predicted protein [Naegleria gruberi]
 gi|284082553|gb|EFC36269.1| predicted protein [Naegleria gruberi]
          Length = 696

 Score = 45.2 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 53/148 (35%), Gaps = 21/148 (14%)

Query: 36  DYSKTNRTFQVFLCPNGRKNSPEALKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW 94
           +  +    + V +         E   L      + L++            DF  +++   
Sbjct: 508 NLIEPIEEYDVLI------LDFETTDLQTRAPTDCLQNGTKEMEAVKLIIDFLPKKSLIL 561

Query: 95  IAHNAKFDVGFINAEL--QRINKDPLDPSR------IIDTLSIARRKHPSSRN--DLNSL 144
            AHNA FD   ++      RIN   +           +DT+ I ++     +N   L ++
Sbjct: 562 -AHNAPFDKSVLHRAFNHWRINNSKITDGMKNSRLIFLDTIPILKKTLKLGKNQCKLGNI 620

Query: 145 CKR-YGITISHRSKHGALLDSHLLSDVY 171
            ++ +  +I ++  H A  D   L ++ 
Sbjct: 621 YQQLFKQSIENQ--HTAAADVFALKEIL 646


>gi|317027723|ref|XP_001399908.2| hypothetical protein ANI_1_2716024 [Aspergillus niger CBS 513.88]
          Length = 510

 Score = 45.2 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 7/93 (7%)

Query: 89  EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKR 147
           ++    + HN   DV ++    +++  D       IDT  + R+         L  +  +
Sbjct: 420 DRRLVLVGHNLSADVKYL----KQVGVDVGGFRDQIDTAQMFRKLRKEESVRSLGGVLAK 475

Query: 148 YGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             I   +   H A  D+    +V +   +G S+
Sbjct: 476 LDIKGWY--LHNAGNDARYTMEVLVASFMGASE 506


>gi|157123874|ref|XP_001653951.1| exonuclease [Aedes aegypti]
 gi|108882853|gb|EAT47078.1| exonuclease [Aedes aegypti]
          Length = 227

 Score = 45.2 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 20/177 (11%)

Query: 6   KMRKIVFDIETT---GLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           + R +V+  E T   GLD       K  +   +  V +++          ++ P      
Sbjct: 43  RTRPMVYSTELTDCLGLDCEFVGTGKGGKEHMLARVSIVNERLEV-VLDSYVKPQKAVID 101

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
               ++ GI  E +     FSS+        + +    + H  K D+  +N    R    
Sbjct: 102 YR-TEISGIRPELMDSGQDFSSVRETVKLMIHGR--ILVGHALKNDMLVLNLRHPRHMVR 158

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYI 172
                  I     ARR        L +L K   G  I +   H ++ D+     +Y+
Sbjct: 159 DTSRFNPI-----ARRIRALGTPSLKNLAKLILGEEIQN-GIHDSVQDATATMKIYL 209


>gi|302682195|ref|XP_003030779.1| hypothetical protein SCHCODRAFT_82825 [Schizophyllum commune H4-8]
 gi|300104470|gb|EFI95876.1| hypothetical protein SCHCODRAFT_82825 [Schizophyllum commune H4-8]
          Length = 365

 Score = 45.2 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 56/172 (32%), Gaps = 17/172 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            K   + +  D E  G+  +      +  V L+++        VF+    R        +
Sbjct: 102 HKQPGKYLAMDCEMVGVGPEGTE-SSLARVSLVNFHGAV-LLDVFVRQRERVTDYR-THV 158

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G+ +  +     F  +  +      ++    + H    D+  +     R         +
Sbjct: 159 SGVRERDMIGARPFEEVQKQVAALLADK--ILVGHAVHNDLQALLLSHPRA--------Q 208

Query: 123 IIDTLSIARRKH--PSSRNDLNSLCK-RYGITISHRSKHGALLDSHLLSDVY 171
             DT   A +     SSR  L +L +   G+ I     H ++ D+     V+
Sbjct: 209 TRDTQFFAGKLRLVRSSRVALRALVQQELGMAIQAGE-HSSVTDARATMAVF 259


>gi|158294135|ref|XP_315415.4| AGAP005406-PA [Anopheles gambiae str. PEST]
 gi|157015424|gb|EAA11910.4| AGAP005406-PA [Anopheles gambiae str. PEST]
          Length = 783

 Score = 45.2 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E  G       +  +  V+          +   + P  +       K  GIT   L+
Sbjct: 431 IDCEMCGAIGGKSVLTRVSIVDEQQKVI----YNKLVKPREKIIDYR-TKFSGITASMLR 485

Query: 72  D-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           D + + + +  +  +     +A  + H+   D+         +  + L P  I  ++   
Sbjct: 486 DVRTTLADVQRKLRELL-PPDAILVGHSLNSDL---------LAMELLHPYVIDTSIIYN 535

Query: 131 RRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
              +P  +  L  L K++    I  S    H ++ D    + + +  +   + I FG + 
Sbjct: 536 VTGNPMHKQKLKILTKKFLDQEIQCSTGG-HDSIEDC--AASLKLVQLKLANSIYFGDQW 592

Query: 188 NEDR 191
            EDR
Sbjct: 593 LEDR 596


>gi|293393221|ref|ZP_06637536.1| oligoribonuclease [Serratia odorifera DSM 4582]
 gi|291424367|gb|EFE97581.1| oligoribonuclease [Serratia odorifera DSM 4582]
          Length = 181

 Score = 45.2 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 31/178 (17%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNG-RKNSP 57
           +  N+   I  D+E TGLD + DRIIEI  +                V            
Sbjct: 1   MTGNENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVIAVHQPDEQLALMDD 60

Query: 58  EALKLH---GITDEFLKDKPSFSSIFSE-----FWDFFNEQNAEWIAHNAKFDVGFINAE 109
             ++ H   G+  + +KD P  +             +     +    ++   D  F+   
Sbjct: 61  WNVRTHTGSGLV-QRVKDSPYDAQAAELATITFLQQWVPAGKSPICGNSVGQDRRFLFRY 119

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG----ITISHRSKHGALLD 163
           + ++  +     R +D             + L  L +R+     +    +  H AL D
Sbjct: 120 MPQL--EAYFHYRYLDV------------STLKELARRWKPEILVGFKKQGTHQALDD 163


>gi|219684305|ref|ZP_03539249.1| DNA polymerase I family protein [Borrelia garinii PBr]
 gi|219672294|gb|EED29347.1| DNA polymerase I family protein [Borrelia garinii PBr]
          Length = 908

 Score = 45.2 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 51/143 (35%), Gaps = 34/143 (23%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D ET+ LD+   ++I I             +F+ F    G     EA        
Sbjct: 341 KYISIDTETSSLDTYTAKLIGISI-----------SFKEF---EGYYIPIEA-------- 378

Query: 68  EFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
              K K       I  +F + F   N + I  N KFD   +          P+ P    D
Sbjct: 379 ---KGKFYIEKHYIIQKFNNLFKS-NPKIIGQNYKFDYKILKNN----GFSPIPP--YFD 428

Query: 126 TLSIARRKHPSSRNDLNSLCKRY 148
           T+  A     +S+  L+ L ++Y
Sbjct: 429 TMIAAYLIDTNSKVSLDFLAEKY 451


>gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36]
 gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36]
          Length = 951

 Score = 45.2 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 46/137 (33%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG +  +  ++ +   +  + +        ++         E  ++  I +E   
Sbjct: 383 IDTETTGTEPMDAELVGMSFSDAENRA-------YYV-----PVPAEREEVLKIVNE--- 427

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                      F   F  + +  +  N K+D+  +     ++           DT+    
Sbjct: 428 -----------FRPLFENEKSMKVGQNIKYDMIILQNYGVQVKGKLF------DTMLAHY 470

Query: 132 RKHPSSRNDLNSLCKRY 148
              P  R++++ L + Y
Sbjct: 471 VLQPELRHNMDYLAEIY 487


>gi|219121015|ref|XP_002185739.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582588|gb|ACI65209.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 182

 Score = 45.2 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 60/168 (35%), Gaps = 13/168 (7%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D E  G+ S+  +   +  V + +++K +     F+   G+        + G+  
Sbjct: 2   RYLAVDCEMVGIGSEGQQ-SALARVSITNWNK-DVVLDTFVKVPGKVTD-FRTWVSGVQP 58

Query: 68  EFLK--DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           + LK        +           +    + H+ K D+  +     + +       R   
Sbjct: 59  KHLKSDQAMDVDACRKTVARLL--KGKILVGHSLKNDLHALMLNHPKQDIRDTATYRPFQ 116

Query: 126 TLSIARRKHPSSRNDLNSLCKRY-GITI-SHRSKHGALLDSHLLSDVY 171
            L   + +       L  L K++ G+TI      H ++ D++   D++
Sbjct: 117 RLGGKKWR----PRKLRDLVKQHVGLTIQEEGQSHDSVDDANATMDLF 160


>gi|220915352|ref|YP_002490656.1| hypothetical protein A2cp1_0231 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953206|gb|ACL63590.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 172

 Score = 45.2 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 68/184 (36%), Gaps = 20/184 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E  G       ++  GAV +      +RTF+  + P      PEAL +  +T
Sbjct: 1   MSAYVVDVEADGPIPGKYSMVSFGAVRVEPGL--SRTFRGEVRPISDLWLPEALAISAVT 58

Query: 67  DE-FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQ-RINKDPLDPS 121
            E  L+       + + F  +  E         + N  FD  ++N      + ++P   S
Sbjct: 59  REQHLRFGEP-GEVMAAFERWIQETTKGKPVLFSDNLSFDWQWMNWYFHTYLGRNPFGWS 117

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             RI D      +   +    L           +H   H  + D+   + V ++++  G 
Sbjct: 118 GRRIGDLYCGMVKDGHAQWKHLR--------PTAHD--HDPVNDAKANAGVLLQLVHMGL 167

Query: 180 QINF 183
           ++N 
Sbjct: 168 KLNL 171


>gi|330797762|ref|XP_003286927.1| hypothetical protein DICPUDRAFT_77789 [Dictyostelium purpureum]
 gi|325083093|gb|EGC36555.1| hypothetical protein DICPUDRAFT_77789 [Dictyostelium purpureum]
          Length = 401

 Score = 45.2 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 45/153 (29%), Gaps = 43/153 (28%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ETTGL S N  IIE+     L+       F     P     +PE+ K++ +T +  
Sbjct: 179 ILDSETTGLTS-NAEIIELSC-ACLNG----EAFYRKSNPTI-PITPESTKINNLTSKDS 231

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                +  +  EF    +      ++                                  
Sbjct: 232 AGHQYWEKVEEEFLILLSNNLLPVVS---------------------------------- 257

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                     L++L   + I     ++H +  D
Sbjct: 258 --DKKKESYSLDNLATFFKINTDGINRHSSSGD 288


>gi|301303083|ref|ZP_07209209.1| exonuclease [Escherichia coli MS 124-1]
 gi|300841492|gb|EFK69252.1| exonuclease [Escherichia coli MS 124-1]
          Length = 323

 Score = 45.2 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 35/190 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALKLHGITDE 68
            D+ET G +  +  II IGA+            F   +     G     + +K       
Sbjct: 145 IDLETMGKNP-DAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIK------W 197

Query: 69  FLK-----------DKPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINAELQRI 113
           +LK           D+        +  +F +E + E+  H       FD   +    +R 
Sbjct: 198 WLKQSREAQSAIMTDEIPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILRRSYERQ 257

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD---- 169
                 P R  +   +          D ++   R  I      +H AL D+   +     
Sbjct: 258 GIP--CPWRYYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDARYQAKYVSA 311

Query: 170 VYIKMMVGGS 179
           ++ K++   +
Sbjct: 312 IWQKLIPSQA 321


>gi|302758050|ref|XP_002962448.1| hypothetical protein SELMODRAFT_141141 [Selaginella moellendorffii]
 gi|300169309|gb|EFJ35911.1| hypothetical protein SELMODRAFT_141141 [Selaginella moellendorffii]
          Length = 236

 Score = 45.2 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 65/176 (36%), Gaps = 37/176 (21%)

Query: 8   RKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V  D+E TGLD   DRI+EI  +   D   T            +      L +H  +
Sbjct: 58  RPLVWIDLEMTGLDVCKDRILEIACIIT-DGKLT------------KSIEGPNLVIHQ-S 103

Query: 67  DEFLKDKPSF---SSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSR 122
           DE LK    +       S   +    QN++   AH     + F+           L  + 
Sbjct: 104 DEILKGMGEWCQTHHAASGLTERV--QNSKVTEAHAEMLVLKFVQKYTI-AGYAQLAGNS 160

Query: 123 IIDTLSIARRKHPSSRNDLN----------SLCKRYGITISHRSK-----HGALLD 163
           + + L+  R+  P+    L+          SLCKR+    + R+      H AL D
Sbjct: 161 VYNDLNFLRKYMPTLAAHLSHVIVDVSSIKSLCKRWYPRDAERAPKKAKSHRALDD 216


>gi|291517508|emb|CBK71124.1| Oligoribonuclease (3'->5' exoribonuclease) [Bifidobacterium longum
           subsp. longum F8]
          Length = 214

 Score = 45.2 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 23/136 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRK---NSPE---ALKLH- 63
            D ETTGLD     ++E+G  V  L       +  + + P+  +   N PE   A ++H 
Sbjct: 29  IDTETTGLDPNQCELLEVGMQVTDLKAETRGDSLHLIVHPDNVRNWANHPEMLKAYEMHL 88

Query: 64  --GITDEFL--KDKP----SFSSIFSEFWDFFNEQNAEWIAH----NAKFDVGFINAELQ 111
             G+    L   + P     +        +F N+Q +++  H    N  FD+  ++  L 
Sbjct: 89  ANGL---MLACAEAPKTGYDYKHTALNIHEFLNDQLSQYTLHPAGTNVDFDLRQLDVHLS 145

Query: 112 RINKDPLDPSRIIDTL 127
           R  + P+        L
Sbjct: 146 RHLEHPITQGLHHRKL 161


>gi|73958722|ref|XP_861681.1| PREDICTED: similar to exonuclease NEF-sp isoform 3 [Canis
           familiaris]
          Length = 658

 Score = 45.2 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 67/217 (30%), Gaps = 36/217 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF---------QVFLCPNGRKNSPEALKL 62
           FD+ T GL S +  + +   V       T  +             + P+ +         
Sbjct: 241 FDVSTGGLQSDDGLVFQ--CVTSKGRELTRISLVAEGGSCVMDELVKPDNKILDYL-TSF 297

Query: 63  HGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            GIT + L   P       +  +        +A  + H+   D+  +             
Sbjct: 298 SGITKKIL--NPVTTRLKDVQRQLKSLL-PPDAVLVGHSLDLDLRALKMI---------- 344

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKR-YG--ITISHRSKHGALLDSHLLSDVYIKMMV 176
              +IDT S+   +    R  L  L K   G  I   +R  H A  D+    ++    + 
Sbjct: 345 HPYVIDT-SLLYVREQGRRFKLKFLAKAILGKDIQCPNRLGHDATEDARTTLELARYFLK 403

Query: 177 GG----SQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
            G    +++N     +        ++      ++++ 
Sbjct: 404 YGPRKIAELNLEALASHQELLATGQELRNTAEVVQQP 440


>gi|268577619|ref|XP_002643792.1| Hypothetical protein CBG02003 [Caenorhabditis briggsae]
 gi|187037744|emb|CAP23181.1| hypothetical protein CBG_02003 [Caenorhabditis briggsae AF16]
          Length = 299

 Score = 45.2 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 63/197 (31%), Gaps = 35/197 (17%)

Query: 10  IVFDIETTGLDSKND---RIIEIGAVELLDYSKTNRT---FQVFLCPNGRK-NSPEALKL 62
           ++ D E T     +D    II+     L    K  R    F  ++ P      +    +L
Sbjct: 13  LILDFEATCEKDNHDYPSEIIQFSVAVLNTREKIIREDVSFNKYVKPIINPKLTDFCAEL 72

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQ---------- 111
            GI  + +    +F  ++ +F  +  E       HN  +    F+    Q          
Sbjct: 73  TGIDQDTIDKADTFPEVYDQFTAWLEE-------HNFQEKRYAFVCESRQDVWRRAHYQF 125

Query: 112 RINKDPLD--PSRIIDTLSIARRKHPSSRND-------LNSLCKRYGITISHRSKHGALL 162
            +NK PL     + ++     R     ++         +  +   Y I       H A+ 
Sbjct: 126 LLNKQPLPAIFRQWVNLSFHYREDMRLAQRQDTVHQSFIEKMSAFYDIPFVG-QAHNAMS 184

Query: 163 DSHLLSDVYIKMMVGGS 179
           +   L+ V   ++  G 
Sbjct: 185 ECSFLAKVTKHILDNGK 201


>gi|258620689|ref|ZP_05715724.1| oligoribonuclease [Vibrio mimicus VM573]
 gi|258586887|gb|EEW11601.1| oligoribonuclease [Vibrio mimicus VM573]
          Length = 181

 Score = 44.8 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 51/173 (29%), Gaps = 21/173 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNG--RKNSP 57
           +  +    I  D+E TGLD +  +IIE+  +             V +   P     K   
Sbjct: 1   MSFSDQNLIWIDLEMTGLDPETHKIIEMATIVTDSELNILAEGPVIVIHQPESELAKMDE 60

Query: 58  EALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAEL 110
                H   G+     + + S      +   F      E  +    ++   D  F+   +
Sbjct: 61  WCTTTHTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRRFLYRHM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R+  +     R ID  +I           L           S    H AL D
Sbjct: 121 PRL--EAYFHYRYIDVSTIKELTRRWQPEVLK--------EFSKTGSHLALDD 163


>gi|330927625|ref|XP_003301941.1| hypothetical protein PTT_13580 [Pyrenophora teres f. teres 0-1]
 gi|311322979|gb|EFQ89963.1| hypothetical protein PTT_13580 [Pyrenophora teres f. teres 0-1]
          Length = 819

 Score = 44.8 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 15/154 (9%)

Query: 64  GITDEFLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           GIT   L+   +  + I  E  +    +    + H+   D+  +           L    
Sbjct: 489 GITAAMLQHVTTTLADIQKELLELITPR-TILVGHSLNSDLNALK----------LTHPF 537

Query: 123 IIDT-LSIARRKHPSSRNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGS 179
           +IDT +     + P  +  L  L ++Y    +   S  H ++ D+    D+  +    G 
Sbjct: 538 LIDTGILYPHPRGPPYKQSLKWLAQKYLKREVQKGSAGHDSVEDARTCLDLVKQKCEKGP 597

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
           +   G    E  F + ++ T P  +   R   + 
Sbjct: 598 RWGSGDTNAESIFKRLDRSTRPKSNNSHRAGAVI 631


>gi|296219707|ref|XP_002756004.1| PREDICTED: putative RNA exonuclease NEF-sp-like [Callithrix
           jacchus]
          Length = 774

 Score = 44.8 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 58/200 (29%), Gaps = 36/200 (18%)

Query: 47  FLCPNGRKNSPEALKLHGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
            + P  +     +    GIT + L   P       +  +        +A  + H+    +
Sbjct: 262 LVKPENKILDHLSS-FSGITKKML--NPVTTKLKDVQRQLRALL-PPDAVIVGHSLDLHL 317

Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR-YGITI--SHRSKHGA 160
             +                +IDT S+   +    R  L  L K   G  I    R  H A
Sbjct: 318 RALKMI----------HPYVIDT-SLLYVREQGRRFKLKFLAKFILGKDIQSPDRLGHDA 366

Query: 161 LLDSHLLSDVYIKMMVGG----SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
             D+    ++    +  G    +++N     N        ++      +L+         
Sbjct: 367 TEDARTTLELARYFLKYGPKKIAELNLEALANCQELQAASQEPRNTAEVLQHPNTSIL-- 424

Query: 217 TKEELDEHDKTIQTLGKNAI 236
                    + + ++G+  +
Sbjct: 425 ---------EFLDSMGQKLL 435


>gi|184201097|ref|YP_001855304.1| oligoribonuclease [Kocuria rhizophila DC2201]
 gi|183581327|dbj|BAG29798.1| oligoribonuclease [Kocuria rhizophila DC2201]
          Length = 199

 Score = 44.8 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 22/164 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSP---EALKLH---G 64
            D E TGL    D +IE+ A+   D          V + P  +           +H   G
Sbjct: 3   IDCEMTGLSLSEDALIEVAALVTDDELNVLGSGVDVVIKPPQQALEQMNDFVRTMHENSG 62

Query: 65  ITDEFLKD---KPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +  E  +      + + +     ++  +   A    ++   D  F+  ++  +       
Sbjct: 63  LLPELERGMDMAQAQAMVLDYIREWVPDAGKAPLGGNSVGTDKTFLTRDMPELVDHLHYR 122

Query: 121 SRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              + T+  +ARR +P          + Y         H AL D
Sbjct: 123 VIDVSTIKELARRWYP----------RAYFQAPEKTGNHRALGD 156


>gi|297584197|ref|YP_003699977.1| exonuclease-like protein [Bacillus selenitireducens MLS10]
 gi|297142654|gb|ADH99411.1| exonuclease-like protein [Bacillus selenitireducens MLS10]
          Length = 411

 Score = 44.8 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 29/132 (21%)

Query: 10  IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD ETTGL     +RI  I     ++      T  + + P             G    
Sbjct: 106 LFFDTETTGLSHGAGNRIFLI-CYARVNQEGIEVTQHLLMDP-------------GHETA 151

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINK--DPLDPSRIID 125
           FL            F D  ++++   +++N   FD   + +    + K    L  +  ID
Sbjct: 152 FLAG----------FLDEISDKD-YIVSYNGKSFDWPQVKSRHAFLQKMLPVLPVTGHID 200

Query: 126 TLSIARRKHPSS 137
            L  ARR     
Sbjct: 201 LLHAARRFWKDE 212


>gi|291526285|emb|CBK91872.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Eubacterium rectale DSM 17629]
          Length = 724

 Score = 44.8 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 28/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG--ITDE 68
           V D+ETTGLD  ND ++ I                    P+        +  +   + ++
Sbjct: 86  VLDVETTGLDVYNDILVGICLY----------------NPD---LPSFYVPFNHTDLQNK 126

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127
            ++ + +     +    +    + + I HN KFD   +     QRI       +   DT 
Sbjct: 127 RVEGQMTEEECKAVMLPYLANGSLKCINHNIKFDDKVVTFQWGQRI------ANVWWDTN 180

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                 + + ++ L  +  +Y
Sbjct: 181 IAGWVLNENEKHRLKPMYNKY 201


>gi|251788035|ref|YP_003002756.1| Exonuclease RNase T and DNA polymerase III [Dickeya zeae Ech1591]
 gi|247536656|gb|ACT05277.1| Exonuclease RNase T and DNA polymerase III [Dickeya zeae Ech1591]
          Length = 180

 Score = 44.8 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 56/176 (31%), Gaps = 27/176 (15%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG----RKNS 56
           M+ +N +  I  D+E TGLD + DRIIEI  +                            
Sbjct: 1   MVNENNL--IWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTLAVHQSDSQLALMD 58

Query: 57  PEALKLH---GITDEFLK-----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
              ++ H   G+  E +K     D+ +          +     +    ++   D  F+  
Sbjct: 59  EWNVRTHTASGLV-ERVKASAYDDRAAELETLRFLQQWVPAGKSPICGNSIGQDRRFLFR 117

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  +          + TL  +ARR  P        L          R+ H AL D
Sbjct: 118 YMPELEAYFHYRYLDVSTLKELARRWKPEM------LA-----GFKKRNTHQALDD 162


>gi|219685277|ref|ZP_03540097.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
 gi|219673373|gb|EED30392.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
          Length = 908

 Score = 44.8 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 51/143 (35%), Gaps = 34/143 (23%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + I  D ET+ LD+   ++I I             +F+ F    G     EA        
Sbjct: 341 KYISIDTETSSLDTYTAKLIGISI-----------SFKEF---EGYYIPIEA-------- 378

Query: 68  EFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
              K K       I  +F + F   N + I  N KFD   +          P+ P    D
Sbjct: 379 ---KGKFYIEKHYIIQKFNNLFKS-NPKIIGQNYKFDYKILKNN----GFSPIPP--YFD 428

Query: 126 TLSIARRKHPSSRNDLNSLCKRY 148
           T+  A     +S+  L+ L ++Y
Sbjct: 429 TMIAAYLIDTNSKVSLDFLAEKY 451


>gi|310791670|gb|EFQ27197.1| QDE-2-interacting protein [Glomerella graminicola M1.001]
          Length = 525

 Score = 44.8 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 13/132 (9%)

Query: 50  PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           P      P  +    IT+  +  +   +     F      +N   + H+ + D+G++   
Sbjct: 385 PKLSNLGPSIIAA--ITNLSVAGQEGIADADRRF------RNVVLLGHDLRSDIGYLEKM 436

Query: 110 LQRINKDPLDPSRIIDT--LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
              +       SR +DT  +  A R+    R  L ++    GI   H + H A  D+   
Sbjct: 437 NVELWGVGGVMSRTLDTKDMYQAWRQETQGR-SLAAVLTDLGIP--HSNLHNAGNDAAYT 493

Query: 168 SDVYIKMMVGGS 179
               + + V   
Sbjct: 494 MQAMLGLAVAAR 505


>gi|269219723|ref|ZP_06163577.1| oligoribonuclease [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210965|gb|EEZ77305.1| oligoribonuclease [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 214

 Score = 44.8 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 24/168 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP---EALKLH- 63
            +  D E TGLD   D ++E+  V    + +  +    V + P+            ++H 
Sbjct: 5   IVWIDCEMTGLDLNVDELVEVAVVITDSELNPVDEGIDVLIRPSDAAVEHMGDFVRQMHT 64

Query: 64  --GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRINKD 116
             G+ +E  K+  +      +   +        Q A    ++   D  F+   +  +   
Sbjct: 65  ASGLIEE-WKNGLTLEEAREQVLAYIRRHIPEAQKAPLGGNSVGTDKAFLEKYMPDVVAH 123

Query: 117 PLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                  + +L  +A+R +P +          Y         H AL D
Sbjct: 124 LHYRLIDVSSLKELAKRWYPRT----------YFAAPEKTGNHRALGD 161


>gi|307188078|gb|EFN72910.1| Oligoribonuclease, mitochondrial [Camponotus floridanus]
          Length = 171

 Score = 44.8 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 54/162 (33%), Gaps = 24/162 (14%)

Query: 15  ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--------KLHGIT 66
           E TGLD + D I+EI  +      K   T ++ +  +      + +        K  G+T
Sbjct: 2   EMTGLDIEKDHILEIACIITDKTLKIIST-ELNIIIHQSNIILDNMNAWCKKQHKKTGLT 60

Query: 67  DE----FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           +      +  K + + + +   ++ +        +    D  F+   +  +N        
Sbjct: 61  ENSRLSTVSLKDAENMVLNFLQEYIHPGVCPLAGNTVYMDRFFLYKYMPLVNNYLHYRII 120

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK-HGALLD 163
            + T+    R+   +             +I  +   H AL D
Sbjct: 121 DVSTIKEVVRRWNPNIYK----------SIPQKELKHRALDD 152


>gi|259907169|ref|YP_002647525.1| Oligoribonuclease [Erwinia pyrifoliae Ep1/96]
 gi|224962791|emb|CAX54246.1| Oligoribonuclease [Erwinia pyrifoliae Ep1/96]
 gi|283476976|emb|CAY72863.1| oligoribonuclease [Erwinia pyrifoliae DSM 12163]
          Length = 193

 Score = 44.8 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 27/176 (15%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFL-CPNGRKNSP 57
           +  N    I  D+E TGL+ + DRIIEI  +              F V            
Sbjct: 7   MTANANNLIWIDLEMTGLNPEQDRIIEIATLVTDADLNILAEGPVFAVHQSDAQLGLMDE 66

Query: 58  EALKLHGITDEFLKDKPSFSSI---FSEFW------DFFNEQNAEWIAHNAKFDVGFINA 108
             ++ H  T+  L ++   S +    +E         +    ++    ++   D  F+  
Sbjct: 67  WNVRTH--TNSGLVERVKASQVDDRAAELATIAFLQQWVPANSSPICGNSIGQDRRFLFK 124

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  +          + TL  +ARR  P        L          +  H AL D
Sbjct: 125 YMPELEAYFHYRYLDVSTLKELARRWKPEI------LA-----GFKKQGAHQALDD 169


>gi|145349060|ref|XP_001418958.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579188|gb|ABO97251.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 278

 Score = 44.8 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 58/178 (32%), Gaps = 25/178 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E  G+    ++     A   +  S        ++ P G + +    +L G T E 
Sbjct: 106 VALDCEFVGVGEAGEK--HACARVCVVGSSGEILLHTWVNP-GEEVTDYREELTGATPEK 162

Query: 70  LKDKPSFSSIFSEFWDFFNEQNA-----------EWIAHNAKFDVGFINAELQRINKDPL 118
           L D PS   + +        +               I H+ + D+  ++ + ++      
Sbjct: 163 LADAPSLERVRAIVVQILLGKAVQTRREHVGVKHLLIGHSVEHDLEVLDIKWKK------ 216

Query: 119 DPSRIIDTLSIA-RRKHPSSRNDLNSLCKRY-GITI-SHRSKHGALLDSHLLSDVYIK 173
                 DT       +H      L +L +++ G  I      H   +D+ +   +Y  
Sbjct: 217 --GMRRDTAQFPLYLRHTHLPFKLRALAEQFLGEKIQEEGEAHDPCVDARISMRLYQA 272


>gi|326930012|ref|XP_003211147.1| PREDICTED: DNA polymerase epsilon catalytic subunit A-like
           [Meleagris gallopavo]
          Length = 2439

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 69/208 (33%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 427 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 485

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKDPL-- 118
                  + ++P  + +   +++   E +    + +N   FD  F+ A       +    
Sbjct: 486 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIIVTYNGDFFDWPFVEARAAAHGINMYQE 541

Query: 119 -------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 542 IGFQKDSQGEYKASQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEEMCR 601

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 602 MATEEPQTLATYSVSDAVATYYMYMKYV 629


>gi|94972231|ref|YP_594271.1| hypothetical protein Dgeo_2764 [Deinococcus geothermalis DSM 11300]
 gi|94554282|gb|ABF44197.1| 3'-5' exonuclease [Deinococcus geothermalis DSM 11300]
          Length = 120

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 12/101 (11%)

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              PS+  ++++       +  E +A NA FD   +                    ++  
Sbjct: 2   SGAPSWPEVYAQLVSLL--EGRELVAWNAAFDCRVLRRSSALHGL-AFPELTWHCAMTWG 58

Query: 131 RRKHPSSR--------NDLNSLCKRYGITISHRSKHGALLD 163
                             L+  C   G+ +  R  H A  D
Sbjct: 59  APIWGEYSEYHGDFRWVSLDEACWSEGVCLDAR-HHRAAGD 98


>gi|325846496|ref|ZP_08169411.1| conserved domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481254|gb|EGC84295.1| conserved domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 303

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 29/152 (19%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K  + + DIETTGLD   D ++ +G +              ++     KN  E ++L  I
Sbjct: 14  KKDECILDIETTGLDPNTDSLVVLGLIYFNKDK-------FYIDQYFAKNDKEEIRLLKI 66

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSR-- 122
             E                     ++ + I +N   FD+ F+N  L + +++ + P    
Sbjct: 67  YKE-------------------KIKSRKLITYNGDVFDLPFLNIRLIKNDQEAVFPENKD 107

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154
           I   +   R+    +   L  + KR+GI  + 
Sbjct: 108 IYKIIKSKRKLIEFNSMKLIDIEKRFGIERND 139


>gi|208806770|ref|ZP_03249107.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4206]
 gi|208726571|gb|EDZ76172.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4206]
          Length = 188

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 64/209 (30%), Gaps = 62/209 (29%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 45

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 46  IAVHQ-SDEQLALMDGWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 105 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 153

Query: 154 HRSKHGALLD-----SHLLS--DVYIKMM 175
            +  H A+ D     + L    + +IK++
Sbjct: 154 KQGTHQAMDDIRESVAELAYYREHFIKLL 182


>gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
 gi|156861999|gb|EDO55430.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
          Length = 958

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 46/137 (33%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG +  +  ++ +   +  + +        ++         E  ++  I +E   
Sbjct: 390 IDTETTGTEPMDAELVGMSFSDAENRA-------YYV-----PVPAEREEVLKIVNE--- 434

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                      F   F  + +  +  N K+D+  +     ++           DT+    
Sbjct: 435 -----------FRPLFENEKSMKVGQNIKYDMIILQNYGVQVKGKLF------DTMLAHY 477

Query: 132 RKHPSSRNDLNSLCKRY 148
              P  R++++ L + Y
Sbjct: 478 VLQPELRHNMDYLAEIY 494


>gi|86739751|ref|YP_480151.1| oligoribonuclease [Frankia sp. CcI3]
 gi|86566613|gb|ABD10422.1| Exonuclease [Frankia sp. CcI3]
          Length = 250

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 59/176 (33%), Gaps = 37/176 (21%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL------LDYSK------TNRTFQVFLCPNGRKN 55
           R +  D E TGLD+ +D ++E+  +        LD              Q  + P  R+ 
Sbjct: 15  RLVWIDCEMTGLDAASDLLLEVACLVTDSELNILDEGIGLVISAPEEALQT-MEPVVREM 73

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAEL 110
              +    G+T        S      +  D+        + A    ++   D  F+   L
Sbjct: 74  HEAS----GLTAAVRASTLSLDDAERQLLDYVRTRIPEVRKAPLCGNSIATDRTFLARYL 129

Query: 111 QRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  D     R+ID  SI   ARR +         +   Y   +  R  H AL D
Sbjct: 130 PSL--DAHLHYRMIDVSSIKELARRWY---------VRAYYAAPV-KRGGHRALAD 173


>gi|50121555|ref|YP_050722.1| hypothetical protein ECA2630 [Pectobacterium atrosepticum SCRI1043]
 gi|49612081|emb|CAG75531.1| phage-related protein [Pectobacterium atrosepticum SCRI1043]
          Length = 299

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 61/184 (33%), Gaps = 40/184 (21%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNG------------- 52
           M  ++ DIET G + +   I  IGAV       +    F   +                 
Sbjct: 1   MNHVMIDIETMGKNPR-APIASIGAVFFNPKTGELGEQFYCRVDFENDMLNGAVTDSGTI 59

Query: 53  ----RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDV 103
               R++   + +L  I+D    D        S+F D+  +     +  +  A++  FD 
Sbjct: 60  KWWLRQSPEASAEL--ISD----DATPIWGAISQFSDWLTDNAESLKTLKVWANSPSFDC 113

Query: 104 GFINAELQRINKDPLDPS---RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
             + +  +R   D        R + T+        +    L +  +  G+       H A
Sbjct: 114 TILKSAFERTEIDIPWNYWNERDVRTMKEVGFAIMNMGRFLGT-AETIGVK------HNA 166

Query: 161 LLDS 164
           L D+
Sbjct: 167 LDDA 170


>gi|16331949|ref|NP_442677.1| DNA polymerase I [Synechocystis sp. PCC 6803]
 gi|6225285|sp|Q55971|DPO1_SYNY3 RecName: Full=DNA polymerase I; Short=POL I
 gi|1006595|dbj|BAA10748.1| DNA polymerase I [Synechocystis sp. PCC 6803]
          Length = 986

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 27/144 (18%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + +D ET  LD     ++ IG     + ++       ++     +    +L   GI   
Sbjct: 397 PVAWDTETDSLDPLVANLVGIGCAWGQEPNQV-----AYIPLKHHQGEQLSL---GI--- 445

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                     +  E            +  NAKFD   +      +    L      DT+ 
Sbjct: 446 -------IKDLLGEI---LGNAIYPKVLQNAKFDRRVLAHHGIELGGVVL------DTML 489

Query: 129 IARRKHPSSRNDLNSLCKRYGITI 152
            +    P   ++L  LC+RY + +
Sbjct: 490 ASYVLQPEETHNLTDLCRRYNLGL 513


>gi|149190503|ref|ZP_01868773.1| ATP-dependent 26S proteasome regulatory subunit [Vibrio shilonii
           AK1]
 gi|148835627|gb|EDL52594.1| ATP-dependent 26S proteasome regulatory subunit [Vibrio shilonii
           AK1]
          Length = 232

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 64/185 (34%), Gaps = 32/185 (17%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFL--CPNGRKNSPE 58
           +   K + I+ D+ET G +S N  I+ IGAV    +       F+  +    +   +  +
Sbjct: 1   METKKTKHIMIDLETMG-NSSNAAIVSIGAVVFDPETGILGADFEEVVSLNSSAFYSDID 59

Query: 59  ALKLH---GITDE----FLKDKP--SFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGF 105
           A  +       DE    FLK+ P  S     +EF  + ++           + A FD   
Sbjct: 60  APTVTWWLSQNDEARAIFLKETPKSSLRDALTEFNQWLSDLGDKKELCLWGNGAGFDNVI 119

Query: 106 INAELQRINKDP-LDPSRIIDTLSIAR----RKHPSSRNDLNSLCKRYGITISHRSKHGA 160
           +N   +     P       +D  +I +          ++DL                H A
Sbjct: 120 LNNAFKACRIQPNFMHWNDLDVRTIVKMGKDILGIDPKSDL----------PREGVHHSA 169

Query: 161 LLDSH 165
           L D+ 
Sbjct: 170 LDDAR 174


>gi|53720090|ref|YP_109076.1| oligoribonuclease [Burkholderia pseudomallei K96243]
 gi|126451823|ref|YP_001067153.1| oligoribonuclease [Burkholderia pseudomallei 1106a]
 gi|134277998|ref|ZP_01764713.1| oligoribonuclease [Burkholderia pseudomallei 305]
 gi|167816819|ref|ZP_02448499.1| oligoribonuclease [Burkholderia pseudomallei 91]
 gi|167846725|ref|ZP_02472233.1| oligoribonuclease [Burkholderia pseudomallei B7210]
 gi|217420377|ref|ZP_03451882.1| oligoribonuclease [Burkholderia pseudomallei 576]
 gi|237813261|ref|YP_002897712.1| oligoribonuclease [Burkholderia pseudomallei MSHR346]
 gi|242316244|ref|ZP_04815260.1| oligoribonuclease [Burkholderia pseudomallei 1106b]
 gi|59798009|sp|Q63S41|ORN_BURPS RecName: Full=Oligoribonuclease
 gi|166215755|sp|A3NXT2|ORN_BURP0 RecName: Full=Oligoribonuclease
 gi|52210504|emb|CAH36487.1| oligoribonuclease [Burkholderia pseudomallei K96243]
 gi|126225465|gb|ABN89005.1| oligoribonuclease [Burkholderia pseudomallei 1106a]
 gi|134251648|gb|EBA51727.1| oligoribonuclease [Burkholderia pseudomallei 305]
 gi|217395789|gb|EEC35806.1| oligoribonuclease [Burkholderia pseudomallei 576]
 gi|237503180|gb|ACQ95498.1| oligoribonuclease [Burkholderia pseudomallei MSHR346]
 gi|242139483|gb|EES25885.1| oligoribonuclease [Burkholderia pseudomallei 1106b]
          Length = 201

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 56/185 (30%), Gaps = 49/185 (26%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +N++  +  D+E TGLD   DRIIEI  V       TN T    +   G       L +H
Sbjct: 15  RNELNLVWLDMEMTGLDPDTDRIIEIAVV------VTNSTLD--IAVEGPV-----LAIH 61

Query: 64  GITDEFLKDKPSFSS-------IFSEFWD------------------FFNEQNAEWIAHN 98
             +DE L     ++        +                              +    ++
Sbjct: 62  Q-SDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLARHVPPGKSPMCGNS 120

Query: 99  AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
              D  F+   +  + +     +  + TL    R+   +                 R+ H
Sbjct: 121 ICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMH 170

Query: 159 GALLD 163
            AL D
Sbjct: 171 TALAD 175


>gi|90407113|ref|ZP_01215302.1| oligoribonuclease [Psychromonas sp. CNPT3]
 gi|90311835|gb|EAS39931.1| oligoribonuclease [Psychromonas sp. CNPT3]
          Length = 179

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 54/176 (30%), Gaps = 31/176 (17%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL----CPNGRKNSPEA 59
            NK   I  D+E TGL+ + D IIEI  +              F+      N        
Sbjct: 1   MNKNNLIWIDLEMTGLNPETDLIIEIATIVTDSDLNVLEEGPAFVIHAPKQNMDAMDEWC 60

Query: 60  LKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAELQR 112
              H   G+T   L+   S +        F      +  +    ++   D  F+   +  
Sbjct: 61  TTHHGDSGLTQRVLESDISCAQAEQATLAFLKKWTLQGASPLCGNSIGQDRRFLVRYMPE 120

Query: 113 INKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLD 163
           +  +     R ID  SI    RR  P                 +H+    H AL D
Sbjct: 121 L--EAYFHYRSIDVSSIKELGRRWAPEM-------------VNAHKKAGEHLALAD 161


>gi|83775004|dbj|BAE65127.1| unnamed protein product [Aspergillus oryzae]
          Length = 267

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 65/195 (33%), Gaps = 15/195 (7%)

Query: 28  EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF------- 80
           E+  +  +D+         ++ P G+       ++ GIT   + +  +            
Sbjct: 10  EVAFLSAVDFLTGEVLINNYVRPTGKVTD-WTTRISGITPAAMAEAVARGQALNGWQSAR 68

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND 140
            E + + + Q    I H    D+  +     R+    +  S  +  LS A ++       
Sbjct: 69  QELYKYIDSQ-TILIGHALNSDLDVLGIYHSRVVDSVILASEAVFGLSSAFKRL----YS 123

Query: 141 LNSLCKRY-GITI-SHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
           L +L + +  + I S    H  L D+    DV +  +     +       +  +  E+K+
Sbjct: 124 LKTLSEVFLKLQIQSDNHPHVCLEDTLATRDVVLSFLRNPEGLGVWAGNAKANYDAEQKQ 183

Query: 199 TVPNISLLKRDKPLF 213
                   K +K   
Sbjct: 184 REARRRQKKNEKAKI 198


>gi|332254127|ref|XP_003276181.1| PREDICTED: DNA polymerase epsilon catalytic subunit A, partial
           [Nomascus leucogenys]
          Length = 2316

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 404 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 462

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKD---- 116
                  + ++P  + +   +++   E +    + +N   FD  F+ A            
Sbjct: 463 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMQQE 518

Query: 117 -----------PLDPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 519 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 578

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 579 MATEQPQTLATYSVSDAVATYYLYMKYV 606


>gi|134056833|emb|CAK37738.1| unnamed protein product [Aspergillus niger]
          Length = 274

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 7/93 (7%)

Query: 89  EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKR 147
           ++    + HN   DV ++    +++  D       IDT  + R+         L  +  +
Sbjct: 184 DRRLVLVGHNLSADVKYL----KQVGVDVGGFRDQIDTAQMFRKLRKEESVRSLGGVLAK 239

Query: 148 YGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             I   +   H A  D+    +V +   +G S+
Sbjct: 240 LDIKGWY--LHNAGNDARYTMEVLVASFMGASE 270


>gi|310765341|gb|ADP10291.1| Oligoribonuclease [Erwinia sp. Ejp617]
          Length = 187

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 27/176 (15%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFL-CPNGRKNSP 57
           +  N    I  D+E TGL+ + DRIIEI  +              F V            
Sbjct: 1   MTANANNLIWIDLEMTGLNPEQDRIIEIATLVTDADLNILAEGPVFAVHQSDAQLGLMDE 60

Query: 58  EALKLHGITDEFLKDKPSFSSI---FSEFW------DFFNEQNAEWIAHNAKFDVGFINA 108
             ++ H  T+  L ++   S +    +E         +    ++    ++   D  F+  
Sbjct: 61  WNVRTH--TNSGLVERVKASQVDDRAAELATIAFLQQWVPANSSPICGNSIGQDRRFLFK 118

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  +          + TL  +ARR  P        L          +  H AL D
Sbjct: 119 YMPELEAYFHYRYLDVSTLKELARRWKPEI------LA-----GFKKQGAHQALDD 163


>gi|152967659|ref|YP_001363443.1| oligoribonuclease [Kineococcus radiotolerans SRS30216]
 gi|151362176|gb|ABS05179.1| Exonuclease RNase T and DNA polymerase III [Kineococcus
           radiotolerans SRS30216]
          Length = 206

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 24/169 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGR---KNSPEALKLH 63
           R +  D E TGL    D ++E+   V   D +       V + P            + +H
Sbjct: 9   RIVWIDCEMTGLSLTEDALVEVAVLVTDADLNVLGDGVDVVIKPPAESLVDMDRVVVDMH 68

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINK 115
              G+  E + D  +         D+  +     + A     +   D  F+  ++ ++  
Sbjct: 69  TASGLLAE-IPDGRTLEEAERIVLDYVKQWVPEPRKAPLAGSSVHTDRAFLARDMVQLTD 127

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + +L  +A+R  P            +     H   H AL D
Sbjct: 128 HLHYRLIDVSSLKELAKRWFPRV---------YFHTPRKHGG-HRALAD 166


>gi|328955232|ref|YP_004372565.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Coriobacterium glomerans PW2]
 gi|328455556|gb|AEB06750.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Coriobacterium glomerans PW2]
          Length = 324

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 29/177 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QV-------FLCPNGRKNSPEALKL 62
            DIETTG   +   I+ +G  E ++ +     +  +             G   S     +
Sbjct: 136 IDIETTGRTPERAHIVNVG-WEFMELAAGAEPYGGESCFCGLPDLYRDEGVPLSF----I 190

Query: 63  HGITDEFLKDKPSFSS--IFSE-FWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPL 118
           H IT + ++   +F    +      +        ++AHNA F+  +   +L         
Sbjct: 191 HHITWDDIEGNMAFRENKVLQARLLELMRT--YPYLAHNAAFEDSWFTIQLDGYAEARRA 248

Query: 119 DPSRIIDTLSIARRK--------HPSSRNDLNSLCKRYG-ITISHRSKHGALLDSHL 166
               ++DT  I RR           S    L +  +R G +  S   +H  L D+ L
Sbjct: 249 GEIVVVDTREICRRLDGDVPALPRESKPASLENWARRRGTLRDSEDERHLGLEDADL 305


>gi|330798154|ref|XP_003287120.1| hypothetical protein DICPUDRAFT_151177 [Dictyostelium purpureum]
 gi|325082898|gb|EGC36366.1| hypothetical protein DICPUDRAFT_151177 [Dictyostelium purpureum]
          Length = 88

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 9/77 (11%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGITDEF 69
          + D ETTGL S N  IIE+     L+          +  PN     +PE+ K++ +T   
Sbjct: 19 ILDSETTGLTS-NAEIIEL-LCACLNGE------AFYRKPNPTISITPESTKINNLTSHD 70

Query: 70 LKDKPSFSSIFSEFWDF 86
          L     +  +  EF++F
Sbjct: 71 LTGHQYWEKVEEEFFNF 87


>gi|254195663|ref|ZP_04902090.1| oligoribonuclease [Burkholderia pseudomallei S13]
 gi|169652409|gb|EDS85102.1| oligoribonuclease [Burkholderia pseudomallei S13]
          Length = 203

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 56/185 (30%), Gaps = 49/185 (26%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +N++  +  D+E TGLD   DRIIEI  V       TN T    +   G       L +H
Sbjct: 17  RNELNLVWLDMEMTGLDPDTDRIIEIAVV------VTNSTLD--IAVEGPV-----LAIH 63

Query: 64  GITDEFLKDKPSFSS-------IFSEFWD------------------FFNEQNAEWIAHN 98
             +DE L     ++        +                              +    ++
Sbjct: 64  Q-SDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLARHVPPGKSPMCGNS 122

Query: 99  AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
              D  F+   +  + +     +  + TL    R+   +                 R+ H
Sbjct: 123 ICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAIYK----------GFQKRAMH 172

Query: 159 GALLD 163
            AL D
Sbjct: 173 TALAD 177


>gi|226326657|ref|ZP_03802175.1| hypothetical protein PROPEN_00510 [Proteus penneri ATCC 35198]
 gi|225204878|gb|EEG87232.1| hypothetical protein PROPEN_00510 [Proteus penneri ATCC 35198]
          Length = 181

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 61/188 (32%), Gaps = 51/188 (27%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + K++   I  D+E TGLD + DRIIEI  +            Q+ +   G         
Sbjct: 1   MSKSENNLIWIDLEMTGLDPECDRIIEIATIVTDP--------QLNILAEGPVI-----A 47

Query: 62  LHGITDEFLK------------------------DKPSFSSIFSEFWD-FFNEQNAEWIA 96
           +H  +DE L                         D  S      EF + +  +  +    
Sbjct: 48  VHQ-SDEQLSLMDEWNTRTHTGSGLVERVKASSYDDNSAQKATIEFLEKWVPKGVSPICG 106

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHR 155
           ++   D  F+   +  + +        + TL  +ARR  P     L             +
Sbjct: 107 NSVGQDRRFLYRYMPELEQYFHYRYLDVSTLKELARRWKPEI---LE--------GFEKK 155

Query: 156 SKHGALLD 163
           + H AL D
Sbjct: 156 NTHQALDD 163


>gi|284164964|ref|YP_003403243.1| hypothetical protein Htur_1685 [Haloterrigena turkmenica DSM 5511]
 gi|284014619|gb|ADB60570.1| hypothetical protein Htur_1685 [Haloterrigena turkmenica DSM 5511]
          Length = 554

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 56/184 (30%), Gaps = 44/184 (23%)

Query: 9   KIVFDIETTGLDSKNDRII-EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  DIET GL      II +IG  +         T++ F+  +     P +        
Sbjct: 312 PLCVDIETDGLSPT---IIWQIGVYD-----PVADTYRAFVERDD-PTDPGS-------- 354

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQ--NAEWIAHN-AKFDVGFINAELQR---INKDPLDPS 121
                      +   F D+      N   +  N   FD   + A + +      D  +  
Sbjct: 355 -----------VLEAFCDWLLGMHPNRALLTWNGWGFDYRHLGAFIAKHVPYYADEWESI 403

Query: 122 RIIDTLSIARR----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              D    A +      P   N L ++    G   +     GA       +  Y + M  
Sbjct: 404 PKFDLYLWAVKNDNALLPGRTNKLEAVADALGYEDAATGLDGA-----ATAAAYQRFMRT 458

Query: 178 GSQI 181
           G+++
Sbjct: 459 GAEL 462


>gi|258624475|ref|ZP_05719421.1| oligoribonuclease [Vibrio mimicus VM603]
 gi|258583224|gb|EEW08027.1| oligoribonuclease [Vibrio mimicus VM603]
          Length = 181

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 33/179 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEA- 59
           +  +    I  D+E TGLD +  +IIE+  +       T+    +    P    + PE+ 
Sbjct: 1   MSFSDQNLIWIDLEMTGLDPETHKIIEMATI------VTDSELNILAEGPVIAIHQPESE 54

Query: 60  --------LKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVG 104
                      H   G+     + + S      +   F      E  +    ++   D  
Sbjct: 55  LAKMDEWCTTTHTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRR 114

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   + R+  +     R ID  +I           L           S    H AL D
Sbjct: 115 FLYRHMPRL--EAYFHYRYIDVSTIKELTRRWQPEVLK--------EFSKTGSHLALDD 163


>gi|189204243|ref|XP_001938457.1| RNA exonuclease 4 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187985556|gb|EDU51044.1| RNA exonuclease 4 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 811

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 15/154 (9%)

Query: 64  GITDEFLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           GIT   L+   +  + I  E  +    +    + H+   D+  +           L    
Sbjct: 481 GITAAMLQHVTTTLADIQKELLELITPR-TILVGHSLNSDLNALK----------LTHPF 529

Query: 123 IIDT-LSIARRKHPSSRNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGS 179
           +IDT +     + P  +  L  L ++Y    +   S  H ++ D+    D+  +    G 
Sbjct: 530 LIDTGILYPHPRGPPYKQSLKWLAQKYLKREVQKGSAGHDSVEDARTCLDLVKQKCEKGP 589

Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
           +   G    E  F + ++ T P  +   R   + 
Sbjct: 590 RWGSGDTNAESIFKRLDRSTRPKSNNSHRAGAVI 623


>gi|197120640|ref|YP_002132591.1| hypothetical protein AnaeK_0220 [Anaeromyxobacter sp. K]
 gi|196170489|gb|ACG71462.1| conserved hypothetical protein [Anaeromyxobacter sp. K]
          Length = 172

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 68/184 (36%), Gaps = 20/184 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E  G       ++  GAV +      +RTF+  + P      PEAL +  +T
Sbjct: 1   MSAYVVDVEADGPIPGKYSMVSFGAVRVEPGL--SRTFRGEVRPISDLWLPEALAISAVT 58

Query: 67  DE-FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQ-RINKDPLDPS 121
            E  L+       + + F  +  E         + N  FD  ++N      + ++P   S
Sbjct: 59  REQHLRFGEP-GEVMAAFERWIQETTKGKPVLFSDNLSFDWQWMNWYFHTYLGRNPFGWS 117

Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             RI D      +   +    L           +H   H  + D+   + V ++++  G 
Sbjct: 118 GRRIGDLYCGMVKDGHAQWKHLR--------PTAHD--HDPVNDAKANAGVLLQLVDMGL 167

Query: 180 QINF 183
           ++N 
Sbjct: 168 KLNL 171


>gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 951

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 46/137 (33%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG +  +  ++ +   +  + +        ++         E  ++  I +E   
Sbjct: 383 IDTETTGTEPMDAELVGMSFSDAENRA-------YYV-----PVPAEREEVLKIVNE--- 427

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                      F   F  + +  +  N K+D+  +     ++           DT+    
Sbjct: 428 -----------FRPLFENEKSMKVGQNIKYDMIILQNYGVQVKGKLF------DTMLAHY 470

Query: 132 RKHPSSRNDLNSLCKRY 148
              P  R++++ L + Y
Sbjct: 471 VLQPELRHNMDYLAEIY 487


>gi|307206938|gb|EFN84782.1| Probable oligoribonuclease [Harpegnathos saltator]
          Length = 180

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 57/167 (34%), Gaps = 20/167 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEAL------ 60
           + I+  ++ TGL+ + D I+EI  V   +     +    + +       +          
Sbjct: 3   KLIILFLQMTGLNIEKDHILEIACVVTDEALKIISEELNIVIHQPDTILNNMHQWCMKNH 62

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAELQRINKD 116
           K++G+ +E    K S     +   +F      ++      +    D  F+   +  +N+ 
Sbjct: 63  KINGLINESRSSKISLKEAETTVLNFLKKYVPKRKCPLAGNTVYMDRLFLYKYMPSVNEY 122

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                  + +L    R+  S           Y    + + KH AL D
Sbjct: 123 LHYRIIDVSSLKELHRRWSS---------NVYITAPTKKLKHRALDD 160


>gi|222622506|gb|EEE56638.1| hypothetical protein OsJ_06041 [Oryza sativa Japonica Group]
          Length = 994

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 12/152 (7%)

Query: 88  NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR 147
           + ++  W+A++  +D+ F+   LQR  +           L  A     S +  L  L + 
Sbjct: 672 DGRSVTWLAYHGDYDLSFLLHLLQRGGRRRGGGD-----LPHAEDHGFSGK--LTGLAEH 724

Query: 148 YGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207
            GI  +  + H A  D+ L    + K+    S                 ++    I   +
Sbjct: 725 LGIRRTGGAAHHAGSDALLTLSCFFKIFRSLSGQQLHQLDARRGLLAGLEEWNMAIKCAR 784

Query: 208 R-----DKPLFTRITKEELDEHDKTIQTLGKN 234
                        +  E L E  + I  L  +
Sbjct: 785 HIDDHTRNIKVIEVVAENLGEEARRIGELVDS 816


>gi|294659775|ref|XP_462200.2| DEHA2G15158p [Debaryomyces hansenii CBS767]
 gi|199434219|emb|CAG90692.2| DEHA2G15158p [Debaryomyces hansenii]
          Length = 791

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 16 TTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCPNGRKNSPEALKLHGITDEFLKDK 73
          TT +   +  +IE  A  ++D +    T+Q  V + P     +    +LH IT E +++ 
Sbjct: 18 TTYVTKDSTELIEF-AWSVVDATTLKNTYQESVLVRPINTPITQYCSQLHKITWEHVRNA 76

Query: 74 PSFSSIFSEFWDFFNE 89
           SF     +F +F  E
Sbjct: 77 GSFKDAIGKFDNFMQE 92


>gi|156551223|ref|XP_001602293.1| PREDICTED: similar to ENSANGP00000010833 [Nasonia vitripennis]
          Length = 188

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 11/119 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFL---CPNGRKNSPE 58
            + + R +  D+E TGL  ++DRI+E+   +   + +  +  F   L        + +  
Sbjct: 4   NQRRNRIVWIDMEMTGLAVESDRILEVACLITDENLNIVSDEFHQVLHQSDDELARMNEW 63

Query: 59  ALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAEL 110
             + H   G+ +   K +    S+    ++F N    +       ++   D  F+   +
Sbjct: 64  CQEHHTKSGLVEASKKSQEDERSVDKSLYNFLNKYIPKGRCPMAGNSVYMDRLFLRKYM 122


>gi|15894265|ref|NP_347614.1| elongation subunit of DNA-dependent DNA polymerase [Clostridium
           acetobutylicum ATCC 824]
 gi|15023885|gb|AAK78954.1|AE007614_2 Possible elongation subunit of DNA-dependent DNA polymerase
           [Clostridium acetobutylicum ATCC 824]
          Length = 274

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 51/149 (34%), Gaps = 28/149 (18%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FDIETTG D + D II I     + Y     TF                    I   F
Sbjct: 35  VYFDIETTGFDREQDNIILIS----IGYYDVKDTFH-------------------IKQYF 71

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +D      +           N  W ++N   FD  FI + +++ N +   P    D   
Sbjct: 72  AEDLNEEKYVLENLKGDIENFNM-WCSYNGKAFDEPFIQSRMKKYNIELTLPREHFDLYR 130

Query: 129 IAR---RKHPSSRNDLNSLCKRYGITISH 154
             R   ++    R +L S+ +  GI    
Sbjct: 131 KIRPYQKQLGLERCNLKSVEQYIGIKRED 159


>gi|81248005|gb|ABB68713.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 204

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 57/190 (30%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 24  MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 68

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 69  IAVHQ-SDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 127

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+S         +
Sbjct: 128 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LDS--------FT 176

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 177 KQGTHQAMDD 186


>gi|325508392|gb|ADZ20028.1| putative elongation subunit of DNA-dependent DNA polymerase
           [Clostridium acetobutylicum EA 2018]
          Length = 265

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 51/149 (34%), Gaps = 28/149 (18%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FDIETTG D + D II I     + Y     TF                    I   F
Sbjct: 26  VYFDIETTGFDREQDNIILIS----IGYYDVKDTFH-------------------IKQYF 62

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +D      +           N  W ++N   FD  FI + +++ N +   P    D   
Sbjct: 63  AEDLNEEKYVLENLKGDIENFNM-WCSYNGKAFDEPFIQSRMKKYNIELTLPREHFDLYR 121

Query: 129 IAR---RKHPSSRNDLNSLCKRYGITISH 154
             R   ++    R +L S+ +  GI    
Sbjct: 122 KIRPYQKQLGLERCNLKSVEQYIGIKRED 150


>gi|297285840|ref|XP_002802855.1| PREDICTED: three prime repair exonuclease 1-like [Macaca mulatta]
          Length = 474

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 81/255 (31%), Gaps = 46/255 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAV------------------ELLDYSKTNRTFQVFL 48
              I FD+E TGL     ++ E+  +                   +    +      + +
Sbjct: 172 QTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPPPRVVDKLSLCV 231

Query: 49  CPNGRKNSPEALKLHGITDEFLK--DKPSFSSIFSEFWDFFNE---QNAEWIAHN-AKFD 102
            P G+  S  A ++ G++   L    +  F    +     F     Q    +AHN  ++D
Sbjct: 232 AP-GKACSSAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDRYD 290

Query: 103 VGFINAELQRINK-DPLDPSRIIDTLSIARRKH---------PSSRNDLNSLCKR-YGIT 151
              + AEL  +     LD +  +D+++  +            P     L S+  R YG +
Sbjct: 291 FPLLQAELAMLGLTSALDGAFCVDSITALKAVERADSPSEHGPRKSYSLGSIYTRLYGQS 350

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                 H A  D   L    + +     Q    +     R F   +     ++     KP
Sbjct: 351 PPD--SHTAEGDVLAL----LSICQWRPQALLRWVDAHARPFSTIRPMY-GVTASAGTKP 403

Query: 212 LFTRITKEELDEHDK 226
             + +T      H  
Sbjct: 404 RPSAVTA---PAHLA 415


>gi|262401567|ref|ZP_06078134.1| oligoribonuclease [Vibrio sp. RC586]
 gi|262352282|gb|EEZ01411.1| oligoribonuclease [Vibrio sp. RC586]
          Length = 181

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 33/179 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEA- 59
           +  +    I  D+E TGLD +  +IIE+  +       T+    +    P    + PE+ 
Sbjct: 1   MSFSDQNLIWIDLEMTGLDPETHKIIEMATI------VTDSELNILAEGPVIAIHQPESE 54

Query: 60  --------LKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVG 104
                      H   G+       + S      +   F      E+ +    ++   D  
Sbjct: 55  LAKMDEWCTTTHTASGLVARVRASQVSEEQAIDQTLAFLKQWVPERKSPICGNSIGQDRR 114

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   + R+  +     R ID  +I           L           S    H AL D
Sbjct: 115 FLYKHMPRL--EAYFHYRYIDVSTIKELTRRWQPEVLK--------EFSKTGSHLALDD 163


>gi|56477692|ref|YP_159281.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
 gi|56313735|emb|CAI08380.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
          Length = 908

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 31/145 (21%)

Query: 10  IVFDIETTGLDSKNDRII--EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + FD ETT LD    +++      VE             +L P          +L     
Sbjct: 333 VAFDTETTSLDQMAAKLVGMSFAIVEGE---------AAYL-PLAHIYPAAPAQL----- 377

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                    + + ++   +        +  N K+D   +     R+           DTL
Sbjct: 378 -------PLAEVLAKLKPWLESDAHPKLGQNLKYDAHVLANHGLRLGGIA------HDTL 424

Query: 128 SIARRKHPSSRNDLNSLCKR-YGIT 151
             +        +D++SL KR  GI 
Sbjct: 425 LQSYVLESDRPHDMDSLAKRHLGID 449


>gi|329956362|ref|ZP_08296959.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
 gi|328524259|gb|EGF51329.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
          Length = 952

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG +     ++ +   +  +          +  P                DE LK
Sbjct: 383 IDTETTGTEPMEAELVGMSFSDAENR--------AYYVPVPAN-----------RDEALK 423

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                  I +E    +  +N+  +  N K+D+  +     ++           DT+    
Sbjct: 424 -------IVNELRPLYENENSMKVGQNIKYDMIVLQNYGVQVKGKLF------DTMLAHY 470

Query: 132 RKHPSSRNDLNSLCKRY 148
              P  R++++ L + Y
Sbjct: 471 VLQPELRHNMDYLAEIY 487


>gi|148239953|ref|YP_001225340.1| DNA polymerase I [Synechococcus sp. WH 7803]
 gi|147848492|emb|CAK24043.1| DNA polymerase I [Synechococcus sp. WH 7803]
          Length = 996

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 26/154 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   N    +  D ETT L+    +++ IG       S            +         
Sbjct: 391 MGCTNPSEPVAVDTETTDLNPFKAQLVGIGVCWGAGLS------------DLAYIPV--- 435

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
              G TD  L   P    +  +   + +  +      NAK+D   +      +       
Sbjct: 436 ---GHTDPALTQLP-LEVVLEQLAPWLSSPSHPKALQNAKYDRLILLRHGLVLGGV---- 487

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKR-YGITIS 153
             ++DTL     +  ++++ L+ + +R YGIT +
Sbjct: 488 --VMDTLLADYLRDAAAKHSLDGMAERDYGITPT 519


>gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
 gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
          Length = 937

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 32/146 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R  + ++  FD ET GL+     I+ + +    +        + +  P  +    EA  +
Sbjct: 361 RLAESKQFAFDTETDGLNPLTASIV-VASFAPEEG-------EAYYLPLPQDFD-EACAI 411

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
               D  +++    S I                A NAKFD   +     R       P  
Sbjct: 412 LQPLDALMRN----SEILKM-------------AQNAKFDQKLL----ARYGVSSATP-- 448

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
           + DTL       P  R++L++L ++Y
Sbjct: 449 LFDTLVAHYLIAPDQRHNLDTLAEQY 474


>gi|228470752|ref|ZP_04055601.1| hypothetical protein PORUE0001_1513 [Porphyromonas uenonis 60-3]
 gi|228307516|gb|EEK16518.1| hypothetical protein PORUE0001_1513 [Porphyromonas uenonis 60-3]
          Length = 262

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 64/200 (32%), Gaps = 35/200 (17%)

Query: 8   RKIVFDIETTGL---DSKNDRIIEIGA--------VELLDYSKTNRTFQVFLCPNGRKNS 56
           R +V D ET          ++   IG         + L +  +  R+    L  +G   +
Sbjct: 64  RYLVVDTETVCYLHDTLDKEKFASIGTPLLASLSWLLLDEELRVVRSEDHLLL-SGVPIT 122

Query: 57  PEALKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            EA   H +T EF+     +  ++   F           + H+  F +  +  +LQ    
Sbjct: 123 SEATDYHQLTTEFVAGHGETPQAVLELFLRDLESVQM-LVGHSLAFHLAVLAHDLQHYQL 181

Query: 116 --DPLDPSRIIDTLSIARRKHPSS--------RNDLNSLC-------KRYGITISHRSKH 158
             + L   R   T+        S         R  L SL        +   I    +S+H
Sbjct: 182 PCESLGARRQFCTMRQGINYLISHYQADPLQTRISLESLYGKLLWGREELEIIYQLKSRH 241

Query: 159 GALLDSHLLSDVYIKMMVGG 178
               D  L +  +IK+    
Sbjct: 242 ----DVVLATHCFIKLYRDQ 257


>gi|239621759|ref|ZP_04664790.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239514950|gb|EEQ54817.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 189

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 16/125 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M RK +   +  DIETTG D ++D ++EIG     +D       ++  + P+        
Sbjct: 1   MTRKTEA-LLWVDIETTGTDPRHDLMLEIGLRCTSMDAKTEYARYESIIKPDILPTDRSF 59

Query: 60  LKLH------GITDEFLKDKPSF---SSIFSEFWDFFNEQNAEWIAH----NAK-FDVGF 105
              H      G+ DE +   P       +     DF        + H    N   FD+ F
Sbjct: 60  AYAHRMHEANGLIDEVIDASPELCSTERVALAVIDFTQSMAETHVLHPAGTNMMGFDLPF 119

Query: 106 INAEL 110
           +   L
Sbjct: 120 LEHYL 124


>gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8]
 gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8]
          Length = 942

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 47/159 (29%), Gaps = 41/159 (25%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRII----EIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           + + N+   I FD ETT LD    +I+     + A        T+  F            
Sbjct: 358 LAKLNQAELICFDTETTSLDPLTAQIVGMSFSVAAGTGAYLPLTHDYF------------ 405

Query: 57  PEALKLHGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
                          D P     + + ++F         + +  N K+D   +      +
Sbjct: 406 ---------------DAPSQLPLAEVLAKFKPLLENPTIKKVGQNLKYDKHVLANHGIAL 450

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSL-CKRYGIT 151
           N          DTL  +        + ++ L  +  GI 
Sbjct: 451 NGIA------HDTLLQSYVLESHRGHGMDELSARHLGIE 483


>gi|227484960|ref|ZP_03915276.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227237115|gb|EEI87130.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 302

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 69/163 (42%), Gaps = 29/163 (17%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + NK  ++V DIETTGLD +ND+++ +G V++ +          ++  +  ++  E +KL
Sbjct: 12  KLNKD-ELVLDIETTGLDFRNDKLVLLGLVKIEND-------SAYIFQHFAQDDSEEIKL 63

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             I    +K+K        +   F  +           FD+ F+N+ L      P+ P  
Sbjct: 64  LNIYLREIKNK--------KIITFNGD----------TFDIPFLNSRLISHKLFPVFPES 105

Query: 123 IID---TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
             D    +    +        L ++ K  GI  +  S++ A+ 
Sbjct: 106 SQDIYKIIKWHSKFFSYDSMKLVAIEKFIGIERNDPSRYKAIS 148


>gi|28872064|ref|NP_794683.1| oligoribonuclease [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213967916|ref|ZP_03396062.1| oligoribonuclease [Pseudomonas syringae pv. tomato T1]
 gi|301384436|ref|ZP_07232854.1| oligoribonuclease [Pseudomonas syringae pv. tomato Max13]
 gi|302132276|ref|ZP_07258266.1| oligoribonuclease [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|37999378|sp|Q87VI6|ORN_PSESM RecName: Full=Oligoribonuclease
 gi|28855317|gb|AAO58378.1| oligoribonuclease [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213927259|gb|EEB60808.1| oligoribonuclease [Pseudomonas syringae pv. tomato T1]
 gi|331014602|gb|EGH94658.1| oligoribonuclease [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 178

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 58/179 (32%), Gaps = 37/179 (20%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNG----- 52
            +NK   I  D+E TGLD   D IIE+  +       T+           +  +      
Sbjct: 1   MQNKQNLIWIDLEMTGLDPDTDVIIEMATI------ITDSELNTLAEGPVIAVHQSDETL 54

Query: 53  RKNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGF 105
            K      + H   G+T    +   S +   ++   F      E+++    ++   D  F
Sbjct: 55  AKMDEWNTRQHGGSGLTQRVRESTISMADAEAQTLAFIKLWVPERSSPICGNSICQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   +  +       +  + TL  +A R  P  +    S              H AL D
Sbjct: 115 LYRHMPALENYFHYRNLDVSTLKELAARWAPELKFKKGS-------------THLALDD 160


>gi|58267302|ref|XP_570807.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57227041|gb|AAW43500.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 602

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 14/97 (14%)

Query: 9   KIVFDIETTGLDSKN----DRIIEIGAV------ELLDYSKT---NRTFQVFLCPNGRKN 55
            + FD+E T    K     + IIE   V         +  +      +F+ ++ P  R  
Sbjct: 184 FLCFDVEATCRGGKEFDYPNEIIEFPVVLVRWGEPNEEGKRVLEKIDSFRSYVRPTWRPI 243

Query: 56  SPEALK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
             +  K L GI  E +   P F  +  +   + ++ +
Sbjct: 244 LTDFCKSLTGIQQETVDKSPIFPEVLKQLEGWLDKWD 280


>gi|126652498|ref|XP_001388371.1| hypothetical protein [Cryptosporidium parvum Iowa II]
 gi|126117464|gb|EAZ51564.1| hypothetical protein cgd7_1030 [Cryptosporidium parvum Iowa II]
          Length = 250

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 65/205 (31%), Gaps = 36/205 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +K   R I  D E  G   +N  I  +G + ++D          F+ P+ R  +    
Sbjct: 1   MSKKTLPRAISIDCEMVG-CGENGHISVLGRIAVVDDKLKL-LMDAFVKPSMRVTN-FRT 57

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFF------NEQNAEWIAHNAKFDVGFINAELQRIN 114
           K  G+T + LK   SF SI  +F          +     ++ H+   D   +        
Sbjct: 58  KWSGLTWDKLKYGESFESIQKKFLQIVEHYRKESTSGLVFVGHDISNDFQVLKWT----- 112

Query: 115 KDPLDPSRIIDTLSIARRK------------------HPSSRNDLNSLCKR-YGITISHR 155
             P    R   T    R+                       +  L SL K    + I   
Sbjct: 113 -PPESEIRDTCTYFPLRKLLIKSLLEKGEITHHQKEGFLRQKPSLRSLSKHVLNLNIQQG 171

Query: 156 SKHGALLDSHLLSDVYIKMMVGGSQ 180
           S H    D+     +Y+ M+    +
Sbjct: 172 S-HCPWEDAKSTMMLYL-MVRDRWE 194


>gi|296229210|ref|XP_002760179.1| PREDICTED: interferon-stimulated 20 kDa exonuclease-like 2
           [Callithrix jacchus]
          Length = 353

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 60/190 (31%), Gaps = 25/190 (13%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +K   + +  D E  G   K   +  +    +++Y   +  +  ++ P  +       + 
Sbjct: 173 QKLPQKMVAIDCEMVGTGPKGH-VSSLARCSIVNYDG-DVLYDEYILPPCQIVDYR-TRW 229

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR------INKD 116
            GI  + + +   F    ++            + H    D   +     +       +  
Sbjct: 230 SGIRKQHMVNATPFKIARAQILKIL--TGKIVVGHAIHNDFKALQYFHPKSLTRDTSHIP 287

Query: 117 PLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           PL+         T+S+          D+ +           +S H ++ D+    ++Y K
Sbjct: 288 PLNRKADCPENATVSLKLLTKKLLNRDIQA----------GKSGHSSVEDAQATMELY-K 336

Query: 174 MMVGGSQINF 183
           ++    + + 
Sbjct: 337 LVEVEWEEHL 346


>gi|303389849|ref|XP_003073156.1| putative RNA exonuclease [Encephalitozoon intestinalis ATCC 50506]
 gi|303302301|gb|ADM11796.1| putative RNA exonuclease [Encephalitozoon intestinalis ATCC 50506]
          Length = 370

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 75/234 (32%), Gaps = 27/234 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  DIE        D     G + ++D +  N  +   + P          +  G+T E
Sbjct: 147 IIALDIEKVKTQRGKDP----GRITMVDSNG-NAVYDKIIKPK-EPILDYLTRYSGLTKE 200

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +        + +E +DF    N   + H  + D+  +           L  ++IIDT  
Sbjct: 201 IIDKGIDVEVVRNEIFDFIGT-NTVIVGHGIENDLSSLE----------LYHNKIIDTAH 249

Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
           +    +PS R   L  L K Y     H   H + +D+       ++++    Q       
Sbjct: 250 LF--LNPSGRKISLAQLAKIYLSKDIHAETHDSRIDATTC----LELLSMKVQYMLRITD 303

Query: 188 NEDRFFKEEKKTVPNI--SLLKRDKPLFTRITKEELDEHDKTIQ-TLGKNAIWD 238
            E    K + KT       +LK ++           D           K  +W 
Sbjct: 304 PESPKLKLQAKTKRRCILDILKHNRGYLNITACSYRDLAKSLRSYKKTKECLWM 357


>gi|242398535|ref|YP_002993959.1| exonuclease-like protein [Thermococcus sibiricus MM 739]
 gi|242264928|gb|ACS89610.1| exonuclease-like protein [Thermococcus sibiricus MM 739]
          Length = 313

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 58/196 (29%), Gaps = 56/196 (28%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +V DIET GL   N  II IG  E        + +                       
Sbjct: 141 KFLVVDIETLGL--FNCPIILIGTGEFRGNEFIVKQY----------------------- 175

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            F ++     SI   F D   E+ A    +  +FDV FI   LQ    +        D  
Sbjct: 176 -FARNLREEESIIRMFLDAVREKEALITFNGRRFDVPFIQERLQHYGIEEKLELPNYDIY 234

Query: 128 SIARRKHPS-SRNDLNSLCKRY--GITISHRSK-------------------------HG 159
             +R        + L +L +RY  GI                                H 
Sbjct: 235 LFSRGLVVGVPDHRLQTL-ERYLLGIEREDDVPSALIPDFYYYYLKTGKAALAIPIIKHN 293

Query: 160 ALLDSHLLSDVYIKMM 175
           AL D    + ++  ++
Sbjct: 294 AL-DIITTARLFDMLL 308


>gi|229512381|ref|ZP_04401856.1| oligoribonuclease [Vibrio cholerae TMA 21]
 gi|229526905|ref|ZP_04416308.1| oligoribonuclease [Vibrio cholerae bv. albensis VL426]
 gi|229526997|ref|ZP_04416393.1| oligoribonuclease [Vibrio cholerae 12129(1)]
 gi|262172561|ref|ZP_06040239.1| oligoribonuclease [Vibrio mimicus MB-451]
 gi|229335520|gb|EEO01001.1| oligoribonuclease [Vibrio cholerae 12129(1)]
 gi|229336074|gb|EEO01093.1| oligoribonuclease [Vibrio cholerae bv. albensis VL426]
 gi|229350596|gb|EEO15541.1| oligoribonuclease [Vibrio cholerae TMA 21]
 gi|261893637|gb|EEY39623.1| oligoribonuclease [Vibrio mimicus MB-451]
          Length = 181

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 33/179 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEA- 59
           +  +    I  D+E TGLD +  +IIE+  +       T+    +    P    + PE+ 
Sbjct: 1   MSFSDQNLIWIDLEMTGLDPETHKIIEMATI------VTDSELNILAEGPVIAIHQPESE 54

Query: 60  --------LKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVG 104
                      H   G+     + + S      +   F      E  +    ++   D  
Sbjct: 55  LAKMDEWCTTTHTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRR 114

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   + R+  +     R ID  +I           L           S    H AL D
Sbjct: 115 FLYKHMPRL--EAYFHYRYIDVSTIKELTRRWQPEVLK--------EFSKTGSHLALDD 163


>gi|156972480|ref|YP_001443387.1| oligoribonuclease [Vibrio harveyi ATCC BAA-1116]
 gi|166216591|sp|A7MZ48|ORN_VIBHB RecName: Full=Oligoribonuclease
 gi|156524074|gb|ABU69160.1| hypothetical protein VIBHAR_00112 [Vibrio harveyi ATCC BAA-1116]
          Length = 181

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 54/173 (31%), Gaps = 21/173 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGR--KNSP 57
           +  +    I  D+E TGLD +  +IIEI ++             V     P     K   
Sbjct: 1   MSFSDQNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELVKMDD 60

Query: 58  EALKLH---GI----TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
                H   G+     +  + ++ + +        +  +  +    ++   D  F+   +
Sbjct: 61  WCTNTHTSSGLVERVRNSDVSEQDAVAQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKHM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             + +        + TL    R+       L+          S +  H AL D
Sbjct: 121 PELEEYFHYRYLDVSTLKELTRRWKPE--VLD--------GFSKQGTHLALDD 163


>gi|149198226|ref|ZP_01875273.1| oligoribonuclease [Lentisphaera araneosa HTCC2155]
 gi|149138828|gb|EDM27234.1| oligoribonuclease [Lentisphaera araneosa HTCC2155]
          Length = 182

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 45/162 (27%), Gaps = 24/162 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK---NSPEALKLHGITDE 68
            D+E TGLD   +RI+EI  +           F   +               +    ++ 
Sbjct: 7   IDMEMTGLDPDENRILEIAILITDHKLDIIDRFHAVIRTPKAILDGMDEWNTR-THTSNG 65

Query: 69  FLKDKPS---FSSIFSEFWDF----FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            +K+  +      +  +  +     F  +       +   D  FI   +    K      
Sbjct: 66  LVKEAVNGRFIQEVEIDLLNLADKHFANKQIFLCGSSLSLDRMFIEKFMPSFAKKL--HY 123

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           RI+D  S                     +    +  H A+ D
Sbjct: 124 RIVDVSSWKAIFQ-----------TFLDLRFHKQDAHRAMND 154


>gi|302411724|ref|XP_003003695.1| RNA exonuclease [Verticillium albo-atrum VaMs.102]
 gi|261357600|gb|EEY20028.1| RNA exonuclease [Verticillium albo-atrum VaMs.102]
          Length = 727

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 25/168 (14%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E          +  I  +        +      + P+ +  +    +  GIT+  
Sbjct: 344 LALDCEMCMTGESEYSLTRISVISWSGEVVMDE----LVKPD-KPITNYVTQFSGITEAM 398

Query: 70  LKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           L   P   +   I ++  D    +    I H+ + D+  ++          L    I+DT
Sbjct: 399 L--APVTTTLRDIQNKLLDLITPR-TILIGHSLESDLKALH----------LSHPFIVDT 445

Query: 127 -LSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDV 170
            L     + P  ++ L  L ++Y    I     + H  + D+    D+
Sbjct: 446 SLIFPHPRGPPLKSSLKWLTQKYLNREIQRGGANGHNPVEDARACLDL 493


>gi|260437063|ref|ZP_05790879.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
 gi|292810372|gb|EFF69577.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
          Length = 362

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 26/113 (23%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +K + + FDIETTG       +  IG V   D       F+ + C               
Sbjct: 21  SKEKVLYFDIETTGFSPATSILYLIGCVYCDD---EGFKFRQWFCD-------------- 63

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD 116
            T E      S   I S+F DF     +  + +N + FD+ FI  +    +  
Sbjct: 64  -TPE------SEPDIISDFLDFVKSF-SVIVHYNGSSFDIPFIIKKCDIHHIP 108


>gi|291572090|dbj|BAI94362.1| DNA polymerase I [Arthrospira platensis NIES-39]
          Length = 959

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 27/147 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              N  + + +D ETT L+ ++  ++ IG                        +    + 
Sbjct: 376 THINPEKPVAWDTETTSLEPRDANLVGIGCCW-----------------GSELSDLAYIP 418

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L+    E L    +   +          +       NAKFD   + ++   +        
Sbjct: 419 LNHTQGEML----NIEQVLEALRPILESEEYPKTLQNAKFDRLILRSQGITLKGVVF--- 471

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY 148
              DT+  +   +P S ++L  L  RY
Sbjct: 472 ---DTMLASYIINPESSHNLTDLSLRY 495


>gi|302815434|ref|XP_002989398.1| hypothetical protein SELMODRAFT_229455 [Selaginella moellendorffii]
 gi|300142792|gb|EFJ09489.1| hypothetical protein SELMODRAFT_229455 [Selaginella moellendorffii]
          Length = 236

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 65/176 (36%), Gaps = 37/176 (21%)

Query: 8   RKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R +V  D+E TGLD   DRI+EI  +   D   T            +      L +H  +
Sbjct: 58  RPLVWIDLEMTGLDVCKDRILEIACIIT-DGKLT------------KSIEGPNLVIHQ-S 103

Query: 67  DEFLKDKPSF---SSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSR 122
           DE LK    +       S   +    QN++   AH     + F+           L  + 
Sbjct: 104 DEILKGMGEWCQTHHAASGLTERV--QNSKVTEAHAEMLVLKFVQKYTI-AGYAQLAGNS 160

Query: 123 IIDTLSIARRKHPSSRNDLN----------SLCKRYGITISHRSK-----HGALLD 163
           + + L+  R+  P+    L+          SLCKR+    + R+      H AL D
Sbjct: 161 VYNDLNFLRKYMPTLAAHLSHVIVDVSSIKSLCKRWYPRDAERAPKKAKSHRALDD 216


>gi|26991580|ref|NP_747005.1| oligoribonuclease [Pseudomonas putida KT2440]
 gi|148549980|ref|YP_001270082.1| oligoribonuclease [Pseudomonas putida F1]
 gi|37999402|sp|Q88DC5|ORN_PSEPK RecName: Full=Oligoribonuclease
 gi|166216581|sp|A5W9T8|ORN_PSEP1 RecName: Full=Oligoribonuclease
 gi|24986668|gb|AAN70469.1|AE016688_8 oligoribonuclease [Pseudomonas putida KT2440]
 gi|148514038|gb|ABQ80898.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas putida F1]
 gi|313500881|gb|ADR62247.1| Orn [Pseudomonas putida BIRD-1]
          Length = 180

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 57/176 (32%), Gaps = 29/176 (16%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-------DYSKTNRTFQVFLCPNGRKN 55
            +N    I  D+E TGLD  +D IIE+  +          +           +     + 
Sbjct: 1   MQNPQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVL---ARM 57

Query: 56  SPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINA 108
                + H   G+T    + K S +   ++   F  +      +    ++   D  F+  
Sbjct: 58  DEWNTRTHGASGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYR 117

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++ +       +  + TL  +A R  P  R+                + H AL D
Sbjct: 118 HMRNLENYFHYRNLDVSTLKELAARWAPDVRDS-----------FKKGNTHLALDD 162


>gi|316974343|gb|EFV57837.1| exonuclease family protein [Trichinella spiralis]
          Length = 728

 Score = 44.4 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 56/147 (38%), Gaps = 19/147 (12%)

Query: 29  IGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP-SFSSIFSEFWDFF 87
           +  V ++D++     ++  + P G        +  GIT++ L     +   +  +  + F
Sbjct: 584 LARVTVVDWNLET-VYERLVKPPGALLDCN-TRFSGITEQELAKAEWTLEDVQKDLSEIF 641

Query: 88  NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT--LSIARRKHPSSRNDLNSLC 145
           +  ++  I H+   D+  +           L   +++DT  +   RR  P  +  L SL 
Sbjct: 642 SP-DSILIGHSLDCDLRALK----------LIHMKVVDTSVVFPHRRGLP-YKRALKSLA 689

Query: 146 KRY--GITISHRSKHGALLDSHLLSDV 170
             Y   I   +   H +  D+    ++
Sbjct: 690 MEYLKKIIQENVGGHDSKEDASACMEL 716


>gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132]
 gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132]
          Length = 933

 Score = 44.4 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 38/143 (26%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +I FD ETT +D+ + +I+ +                    P      P +         
Sbjct: 362 EICFDTETTDIDALDAQIVGLSFAY---------------RPREAFYIPFS--------- 397

Query: 69  FLKDKPSFSS---IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                P F     +  EF   F  +N   +A N K+D+  +      +  +      I D
Sbjct: 398 -----PKFEEAKAVLIEFKPLFENENIRKVAQNIKYDLTILATYGVEVKGE------IYD 446

Query: 126 TLSIARRKHPSSRNDLNSLCKRY 148
           T+       P  R+ ++ L + Y
Sbjct: 447 TMLAHYILEPDQRHGMDYLAETY 469


>gi|324019450|gb|EGB88669.1| exonuclease [Escherichia coli MS 117-3]
          Length = 823

 Score = 44.4 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 35/190 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALKLHGITDE 68
            D+ET G +  +  II IGA+            F   +     G     + +K       
Sbjct: 645 IDLETMGKNP-DAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIK------W 697

Query: 69  FLK-----------DKPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINAELQRI 113
           +LK           D+        +  +F +E + E+  H       FD   +    +R 
Sbjct: 698 WLKQSREAQSAIMTDEIPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILRRSYERQ 757

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD---- 169
                 P R  +   +          D ++   R  I      +H AL D+   +     
Sbjct: 758 GIP--CPWRYYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDARYQAKYVSV 811

Query: 170 VYIKMMVGGS 179
           ++ K++   +
Sbjct: 812 IWQKLIPSQA 821


>gi|332298700|ref|YP_004440622.1| DNA polymerase I [Treponema brennaborense DSM 12168]
 gi|332181803|gb|AEE17491.1| DNA polymerase I [Treponema brennaborense DSM 12168]
          Length = 926

 Score = 44.4 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 71/233 (30%), Gaps = 53/233 (22%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  FD ET  LD  + RI+                   ++      + P+AL       +
Sbjct: 353 EAAFDCETDSLDRIHTRIVGFSLSRRAGTGI-------YV----PLSVPDAL-----LTQ 396

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            L +K      F +    F+        HN KFD   +     R N       RI DT+ 
Sbjct: 397 TLIEK---QDAFVQLERLFSVPACTLAMHNGKFDYEVL-----RSNGLAEPRCRIADTMV 448

Query: 129 IARRKHPSSR-NDLNSLCK-------------------RYGITISHRSKHGALLDSHLLS 168
            A    P      L +L                        I +     + A  D+ L  
Sbjct: 449 AAWLLDPDRSAYSLEALAADKLGLETIPYTDVVPKGSTFADIPLEQAVPY-AAEDADLTW 507

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
            +Y   +   +    G     D F+  E   +P ++ ++ D      I K EL
Sbjct: 508 QLYRLFLPRLAAAKLG-----DLFWNLEMPVLPILAEMELDG---IHIEKSEL 552


>gi|290512276|ref|ZP_06551643.1| oligoribonuclease [Klebsiella sp. 1_1_55]
 gi|289775271|gb|EFD83272.1| oligoribonuclease [Klebsiella sp. 1_1_55]
          Length = 199

 Score = 44.4 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 55/174 (31%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFL-CPNGRKNSP 57
           +  N+   I  D+E TGLD + DRIIEI  +             T  V            
Sbjct: 19  MSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDAQLALMDE 78

Query: 58  EALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAEL 110
             ++ H   G+ D       S         +F  +      +    ++   D  F+   +
Sbjct: 79  WNVRTHTGSGLVDRVKASAVSEHDAELATIEFLKQWVPAGKSPICGNSIGQDRRFLFKYM 138

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++          + TL  +ARR  P     L+            +  H A+ D
Sbjct: 139 PQLEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFKKQGTHQAMDD 181


>gi|146418106|ref|XP_001485019.1| hypothetical protein PGUG_02748 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 310

 Score = 44.4 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 13/170 (7%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +K+  + +  D E  G+  +      +  V  +++      +  F+ P  +        +
Sbjct: 136 KKDIGKYVALDCEFVGVGPEGTE-SALARVSFVNFYGHV-IYDRFVRPREKVTDWR-TWV 192

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G+T + + D  SF     E       +    I H    D+  +     R          
Sbjct: 193 SGVTAQHMTDAISFDEAQKEASKILETR--ILIGHAVHHDLDSLFLSHPRFQIRDTSKFG 250

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVY 171
               +S  R         L  L K +  + I   S H ++ D+     +Y
Sbjct: 251 PFRAISNGRT------PSLKKLIKHFLKMDIQDGS-HSSVEDAQATMLLY 293


>gi|328880389|emb|CCA53628.1| hypothetical protein SVEN_0341 [Streptomyces venezuelae ATCC 10712]
          Length = 200

 Score = 44.4 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 20/175 (11%)

Query: 11  VFDIETTGLDSKN-----DRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           + D+E T  D +        IIEIG   V+L    + +R  ++ + P   + S    +L 
Sbjct: 9   IVDVEATCWDGERPPGAVSEIIEIGLTVVDLAAGERLSRH-RILVRPARSRVSAFCTELT 67

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G+T   +     F+           E  A   A    +D      + +          R 
Sbjct: 68  GLTQAEVDTGLDFA-AACRLLATTYEAGARPWASWGDYDRKQFALQCRATGTPYPFGHRH 126

Query: 124 ID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS-HLLSDVYI 172
            +     T +   R+ P          +  G+ +  R  H    D+ ++ + V +
Sbjct: 127 TNAKAVFTEAFGLRRRPGM----AQALEIAGLPLEGR-HHRGEDDAWNIAALVLL 176


>gi|325842732|ref|ZP_08167767.1| 3'-5' exonuclease [Turicibacter sp. HGF1]
 gi|325489532|gb|EGC91897.1| 3'-5' exonuclease [Turicibacter sp. HGF1]
          Length = 232

 Score = 44.4 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 61/184 (33%), Gaps = 54/184 (29%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N  + I  DIETTGLD   D I  I AV   D+                    EA+K  
Sbjct: 59  LNYSKIIGVDIETTGLDFLEDSIRLI-AVYSEDFEYVGE-------------DLEAVK-T 103

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA--------ELQRINK 115
            +TD          S+               + H+++FDV F+              I  
Sbjct: 104 LLTDP---------SVLK-------------VFHHSQFDVCFLKKAGIDVCTFTDTFIMN 141

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-----GITISHRSKHGALLDSHLLSDV 170
             L+   + D+LS   + +      L+   +        +T  H +    L D+    ++
Sbjct: 142 QILNNLPVFDSLSRLAKVYLGK--SLDKSLQHADNWQSDLTQEHYAY--CLDDAKTTYEL 197

Query: 171 YIKM 174
           Y  M
Sbjct: 198 YQHM 201


>gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
 gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
          Length = 929

 Score = 44.4 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 28/154 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I ++  + + FD ET  L++    ++                +   +   G        K
Sbjct: 343 ILESAEKIVAFDTETDSLNTHEANLVGFSLSVEKGKGI----YVPVILSGGMFAPETISK 398

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
                              +     F E+    + HN KFD+  + A             
Sbjct: 399 ---------------KDCLAVLEKLFAEKELTLVMHNGKFDLEVLAAN----GMSAKTEC 439

Query: 122 RIIDTLSIARRKHP----SSRNDLNSLCK-RYGI 150
           +I DT+  A   +P     S   L  L + + G+
Sbjct: 440 KIFDTMIAAWLLNPAASGKSPYSLEFLAETKLGL 473


>gi|298241885|ref|ZP_06965692.1| hypothetical protein Krac_10301 [Ktedonobacter racemifer DSM 44963]
 gi|297554939|gb|EFH88803.1| hypothetical protein Krac_10301 [Ktedonobacter racemifer DSM 44963]
          Length = 270

 Score = 44.4 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 9/146 (6%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            +I+TTGL  ++  I+ +  +        +    + + P     +P   +++G+ +E L+
Sbjct: 86  LEIDTTGLS-EDAEIVRVTLLSPTGTLIDD----ILIKPK-YPLTPRLSEINGLRNEDLE 139

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
              S    +    +    +    ++    FD   +N    R ++ P       D      
Sbjct: 140 QALSIREAWPRIAESL--EGRYILSFAQDFDREKLNETALR-DQLPRINFIGEDLQLHLG 196

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSK 157
               +S   L   C R G  +  R  
Sbjct: 197 HFLGNSYIKLAEACTRIGHPLPERPH 222


>gi|284053371|ref|ZP_06383581.1| DNA polymerase I [Arthrospira platensis str. Paraca]
          Length = 750

 Score = 44.4 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 27/147 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
              N  + + +D ETT L+ ++  ++ IG                        +    + 
Sbjct: 167 THINPEKPVAWDTETTSLEPRDANLVGIGCCW-----------------GSELSDLAYIP 209

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L+    E L    +   +          +       NAKFD   + ++   +        
Sbjct: 210 LNHTQGEML----NIEQVLEALRPILESEEYPKTLQNAKFDRLILRSQGITLKGVVF--- 262

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY 148
              DT+  +   +P S ++L  L  RY
Sbjct: 263 ---DTMLASYIINPESSHNLTDLSLRY 286


>gi|52345906|ref|NP_001004997.1| interferon stimulated exonuclease gene 20kDa-like 2 [Xenopus
           (Silurana) tropicalis]
 gi|49522525|gb|AAH75592.1| MGC89596 protein [Xenopus (Silurana) tropicalis]
          Length = 366

 Score = 44.4 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 5/103 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G    N R+  +    ++++   +  +  ++ P     +    +  GI  
Sbjct: 191 KAVAIDCEMVGTGP-NGRVSNLARCSIVNWFG-DVMYDKYIKPKS-PVTDYRTRWSGIRR 247

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           E L++   F     E     N      + H    D   +N   
Sbjct: 248 EHLRNATPFDVAQKEILKILN--GKVVVGHAIHNDYKALNYFH 288


>gi|88812805|ref|ZP_01128050.1| oligoribonuclease [Nitrococcus mobilis Nb-231]
 gi|88789875|gb|EAR20997.1| oligoribonuclease [Nitrococcus mobilis Nb-231]
          Length = 185

 Score = 44.4 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 59/176 (33%), Gaps = 23/176 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNG---RKNSP 57
           + ++    I  D+E TGLD+  D IIEI  AV   + +       V +  +         
Sbjct: 1   MPQSTGNLIWIDLEMTGLDTDRDCIIEIATAVTDKELNILAEGPTVAIHQSETVLAAMDK 60

Query: 58  EALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
              + HG       +    + +  +          +     +    ++   D  F++  +
Sbjct: 61  WNTEQHGSSGLVERVRQSRIDEAQAEQRTLQFLQQWVPPNASPMCGNSICQDRRFLHRCM 120

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            ++ +     +  + TL  +ARR  P     L           S R  H A+ D  
Sbjct: 121 PKLEQYFHYRNLDVSTLKELARRWVPEI---LQ--------NFSKRGAHLAMDDVR 165


>gi|325577877|ref|ZP_08148110.1| oligoribonuclease [Haemophilus parainfluenzae ATCC 33392]
 gi|325160307|gb|EGC72434.1| oligoribonuclease [Haemophilus parainfluenzae ATCC 33392]
          Length = 200

 Score = 44.4 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 57/181 (31%), Gaps = 37/181 (20%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNGR 53
           ++ +K   I  D+E TGLD + +RIIEI  +                       L     
Sbjct: 19  MQLDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVIAVHQSDELLN---- 74

Query: 54  KNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFI 106
           K S   +K H   G+ +     K +  +   +  DF         +    ++   D  F+
Sbjct: 75  KMSEWCVKTHTANGLVERVKASKITERAAELQTLDFLKRWVPKGASPICGNSIAQDKRFL 134

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGALL 162
              +  +        R +D             + L  L  R+   I       + H AL 
Sbjct: 135 YKYMPDL--ADYFHYRHVDV------------STLKELASRWKPEILEGFKKGNTHLALD 180

Query: 163 D 163
           D
Sbjct: 181 D 181


>gi|192823857|ref|YP_001994775.1| gp44 [Mycobacterium phage DD5]
 gi|190610635|gb|ACE80153.1| gp44 [Mycobacterium phage DD5]
          Length = 608

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 42/153 (27%)

Query: 4   KNKMRKIVFDIETTGLDSKND----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           ++ +R +  D ETTGL+   D    R+I+ G             ++ ++ P  R  +   
Sbjct: 32  RSNLRILGLDTETTGLNIYQDDFGIRLIQFG-----------NPWESWVLPVERGGAFVG 80

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA----ELQRINK 115
             +                   +   F        + HNA FD+  I       ++++  
Sbjct: 81  AAVT---------------ALQKVQRF--------VIHNAAFDLQVIERTLGVPMEQMWP 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
              D       +     K   + + L  L K Y
Sbjct: 118 KVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFY 150


>gi|12229815|sp|Q9S1G2|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I
 gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum]
          Length = 1016

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 80/250 (32%), Gaps = 47/250 (18%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-----YSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + FD ETT LD+    ++        +      +K    +   +  NG  +         
Sbjct: 418 VAFDTETTSLDAMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVGDLLGGGL--- 474

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                  ++               +++   +A N K+D   +    +R   +        
Sbjct: 475 -----ADNQIPMRDALPRLKALLEDESVLKVAQNLKYDYLLL----KRYGIETRSFD--- 522

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRY-----------------GITIS----HRSKHGALL 162
           DT+ I+         + ++ L +++                  +T       R+ H A  
Sbjct: 523 DTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSGKANVTFDLVDIDRATHYAAE 582

Query: 163 DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL--LKRDKPLFTRITKEE 220
           D+ +   ++  +++       G  +  +R  +     +  +    +  D+ + +R++  E
Sbjct: 583 DADVTLRLW--LVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSG-E 639

Query: 221 LDEHDKTIQT 230
           L +    ++ 
Sbjct: 640 LAQGAARLED 649


>gi|315634034|ref|ZP_07889323.1| oligoribonuclease [Aggregatibacter segnis ATCC 33393]
 gi|315477284|gb|EFU68027.1| oligoribonuclease [Aggregatibacter segnis ATCC 33393]
          Length = 182

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 58/181 (32%), Gaps = 37/181 (20%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNGR 53
           +  +K   I  D+E TGLD + +RIIEI  +                       L     
Sbjct: 1   MTLDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAIHQSDELLN---- 56

Query: 54  KNSPEALKLH---GI----TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           K S   +K H   G+     +  L ++ +          +  +  +    ++   D  F+
Sbjct: 57  KMSDWCVKTHTANGLVERVKNSKLTERAAELQTLDFLKKYVPKGVSPICGNSVAQDKRFL 116

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGALL 162
              +  +        R +D             + L  L  R+   I    S ++ H AL 
Sbjct: 117 FKYMPEL--ADYFHYRHLDV------------STLKELAARWKPEILDGFSKQNTHLALD 162

Query: 163 D 163
           D
Sbjct: 163 D 163


>gi|308172795|ref|YP_003919500.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605659|emb|CBI42030.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           amyloliquefaciens DSM 7]
          Length = 761

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 25/148 (16%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N    I  D ETTG+D   D I+ +        +  N  + V++               
Sbjct: 134 LNNEEIIAVDTETTGVDVYTDVIVGLSL------TLPNADWHVYIPVEHVDC-------- 179

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                   ++ S + +       FN+++   + HNA FD+  +      +     D    
Sbjct: 180 --------EQLSRAYVLEGLAPVFNDESIGKVLHNAIFDIAMLRRHGFDLKGVAWDTMTA 231

Query: 124 IDTL---SIARRKHPSSRNDLNSLCKRY 148
           +  L      R    +    L  L  +Y
Sbjct: 232 MHLLNENESDRALGGAGSFKLKDLAPKY 259


>gi|260913837|ref|ZP_05920311.1| oligoribonuclease [Pasteurella dagmatis ATCC 43325]
 gi|260631924|gb|EEX50101.1| oligoribonuclease [Pasteurella dagmatis ATCC 43325]
          Length = 184

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 39/182 (21%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNGR 53
           ++ ++   I  D+E TGLD + +RIIEI  +                       L    R
Sbjct: 1   MQLDRQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELL----R 56

Query: 54  KNSPEALKLH---GITDEFLKDKPSFSSIFS----EFW-DFFNEQNAEWIAHNAKFDVGF 105
           K S    K H   G+  E +K+             +F   +  +  +    ++   D  F
Sbjct: 57  KMSEWCTKTHTENGLV-ERVKNSKLTERAAELQTIDFLKKWVPKGVSPICGNSVSQDKRF 115

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT----ISHRSKHGAL 161
           +   +  +        R +D             + L  L  R+          ++ H AL
Sbjct: 116 LFKYMPEL--ADYFHYRHLDV------------STLKELASRWKPEVLKGFQKKNTHLAL 161

Query: 162 LD 163
            D
Sbjct: 162 DD 163


>gi|304396962|ref|ZP_07378842.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. aB]
 gi|308188276|ref|YP_003932407.1| oligoribonuclease [Pantoea vagans C9-1]
 gi|304355758|gb|EFM20125.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. aB]
 gi|308058786|gb|ADO10958.1| oligoribonuclease [Pantoea vagans C9-1]
          Length = 182

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 57/182 (31%), Gaps = 37/182 (20%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRK 54
           M   N+   I  D+E TGLD  +DRIIEI  +                  Q         
Sbjct: 1   MATGNEQNLIWIDLEMTGLDPTHDRIIEIATLVTDANLNILAEGPVMAVHQS--DAQLAL 58

Query: 55  NSPEALKLHGITDEFLKDKPSFSSI---FSEF--WDFFNEQ----NAEWIAHNAKFDVGF 105
                ++ H  T+  L  +   S I    +E    +F  +      +    ++   D  F
Sbjct: 59  MDEWNVRTH--TNSGLVARVKESQIDDRAAELATIEFLKQWVPANTSPICGNSIGQDRRF 116

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGAL 161
           +   +  +  +     R +D             + L  L +R+   I         H AL
Sbjct: 117 LFKYMPEL--EAYFHYRYLDV------------STLKELARRWKPEILPGFKKGGTHQAL 162

Query: 162 LD 163
            D
Sbjct: 163 DD 164


>gi|299472827|emb|CBN80395.1| EsV-1-93 [Ectocarpus siliculosus]
          Length = 1047

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 66/217 (30%), Gaps = 33/217 (15%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELL--------DYSKTNRTFQVFLCPNGRKNSP 57
            M    +D+ET+GL++  D I +   +             S T      +          
Sbjct: 205 PMTICSYDLETSGLNTNEDYIFQASMIFSRLGDPCQDAKGSATGHAVDSYTD-GVVICVG 263

Query: 58  EALKLHG----ITDEFLKDKPSFSSIFSEFWDFFNEQNA-EWIAHN-AKFDVGFINAELQ 111
           +   + G    I +  L        +  +F +   E+       +N  KFD  F+    +
Sbjct: 264 DTESVDGTPLLIVENEL-------QLLDKFREILIERGCNILCGYNTFKFDSAFLYKRAE 316

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           R   D       I  L+            L    +   I I  R          +  D++
Sbjct: 317 RYGFDGFKKLSFIKDLACDLEVKTLQSAALGK-NELKQIIIPGR--------VEI--DLF 365

Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
           + M       ++      D+FF  +K  V    +L+ 
Sbjct: 366 MVMRRSQKLSSYKLNAVCDKFFGGKKDDVTYTDILQA 402


>gi|229588067|ref|YP_002870186.1| oligoribonuclease [Pseudomonas fluorescens SBW25]
 gi|312958644|ref|ZP_07773164.1| exonuclease [Pseudomonas fluorescens WH6]
 gi|229359933|emb|CAY46787.1| oligoribonuclease [Pseudomonas fluorescens SBW25]
 gi|311287187|gb|EFQ65748.1| exonuclease [Pseudomonas fluorescens WH6]
          Length = 180

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 51/175 (29%), Gaps = 27/175 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRKNS 56
            +N    I  D+E TGL+   D IIE+  +                              
Sbjct: 1   MQNPQNLIWIDLEMTGLNPDTDVIIEMATIVTDSNLNTLAEGPVIAIHHS--DAVLATMD 58

Query: 57  PEALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
               + HG       + D  +    + +   +    +  +  +    ++   D  F+   
Sbjct: 59  EWNTRTHGNSGLTQRVRDSRISMAEAEAETIAFLEKWVPKGKSPICGNSICQDRRFLYTH 118

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++ +       +  + TL  +A R  P  ++                S H AL D
Sbjct: 119 MKGLESYFHYRNLDVSTLKELAARWAPEVKDS-----------FHKGSTHLALDD 162


>gi|192824130|ref|YP_001994685.1| gp44 [Mycobacterium phage Lockley]
 gi|190610360|gb|ACE79881.1| gp44 [Mycobacterium phage Lockley]
          Length = 608

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 42/153 (27%)

Query: 4   KNKMRKIVFDIETTGLDSKND----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           ++ +R +  D ETTGL+   D    R+I+ G             ++ ++ P  R  +   
Sbjct: 32  RSNLRILGLDTETTGLNIYQDDFGIRLIQFG-----------NPWESWVLPVERGGAFVG 80

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA----ELQRINK 115
             +                   +   F        + HNA FD+  I       ++++  
Sbjct: 81  AAVT---------------ALQKVQRF--------VIHNAAFDLQVIERTLGVPMEQMWP 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
              D       +     K   + + L  L K Y
Sbjct: 118 KVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFY 150


>gi|299771588|ref|YP_003733614.1| oligoribonuclease [Acinetobacter sp. DR1]
 gi|298701676|gb|ADI92241.1| oligoribonuclease [Acinetobacter sp. DR1]
          Length = 188

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 27/177 (15%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRK---NS 56
           M      R I  D+E TGLD+ ND+IIEI  +   D+        V  +    R      
Sbjct: 1   MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNVLAEGPVLAVHQPDRILNAMD 60

Query: 57  PEALKLHG----ITDEFLKDK-----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
               + HG    I  E ++        +          + N + +    ++   D  F++
Sbjct: 61  EWNTRQHGQSGLI--ERVRRSKLTALDAELQTLEFLKKWVNPKVSPMCGNSICQDRRFLH 118

Query: 108 AELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  + +     +  + T+  +++R  P   + L              + H A+ D
Sbjct: 119 RLMPELEQYFHYRNLDVSTVKELSKRWRPEIMSGLKK-----------NASHLAMDD 164


>gi|241195978|ref|YP_002969533.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|240250532|gb|ACS47471.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis DSM
           10140]
          Length = 217

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 22/168 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN---SPEALKLH 63
           R I  D E TGLD  +D + E+  V    + +  ++   + + P+             +H
Sbjct: 16  RMIWIDCEMTGLDIFHDELCEVSVVPTDFELNVLDKGIDLVIKPSEAAVAHMDDFVRAMH 75

Query: 64  ---GITDEF---LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD 116
              G+ DE+   L  + +   +      F  +     +A N+   D  F++  +  + + 
Sbjct: 76  TRSGLIDEWENGLSVQEAERQVIDYVQQFIPQGVKPLLAGNSVGSDKKFLDRFMPNLMEY 135

Query: 117 PLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                  + T+  +ARR +P            Y         H A  D
Sbjct: 136 LHYRVIDVSTIKELARRWYP----------AVYENRPPKNGGHRAWAD 173


>gi|224072347|ref|XP_002187342.1| PREDICTED: polymerase (DNA directed), epsilon [Taeniopygia guttata]
          Length = 2245

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D+  D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 230 LAFDIETTKLPLKFPDADTDQIMMISYMIDGQGYLITNREIVSENIEDFEFTPKPEYEG- 288

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKDPL-- 118
                  + ++P  + +   +++   E +    + +N   FD  F+ A       +    
Sbjct: 289 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIIVTYNGDFFDWPFVEARAAAHGINMYQE 344

Query: 119 -------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 345 IGFQKDSQGEYKASQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEEMCR 404

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 405 MATEEPQTLATYSVSDAVATYYMYMKYV 432


>gi|72046790|ref|XP_780396.1| PREDICTED: similar to CGI-114 protein [Strongylocentrotus
           purpuratus]
 gi|115956149|ref|XP_001188154.1| PREDICTED: similar to CGI-114 protein [Strongylocentrotus
           purpuratus]
          Length = 196

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 20/169 (11%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSP---EALK 61
           K R +  D+E TGLD     IIE+   +   + +       + +              ++
Sbjct: 20  KSRLVWVDLEMTGLDLDTCHIIEMACLITDQELNVVAEGPNIIIHQPDEILDKMNDWCVQ 79

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRIN 114
            H   G+ D     K +      E   F  E    +      ++   D  F+   + +  
Sbjct: 80  HHTASGLVDAVKASKITLQQAEYEMLSFVREYTYPKLCPLAGNSIHVDKTFLVKYMPQFM 139

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                    + T+    R+            + Y      +  H A+ D
Sbjct: 140 DHLHYRIVDVSTVKELCRRW---------YREEYEAGNQKKGSHRAMGD 179


>gi|148265918|ref|YP_001232624.1| DNA polymerase I [Geobacter uraniireducens Rf4]
 gi|146399418|gb|ABQ28051.1| DNA polymerase I [Geobacter uraniireducens Rf4]
          Length = 892

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 30/149 (20%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R    D+ETT L+     I+ I            R  + +  P G +        H ++ 
Sbjct: 314 RAFAVDLETTSLNPLEAEIVGISFSF--------REHEAYYIPVGHRYPGAP---HQLSR 362

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +                  +     I  N K+D   +    +R   D        DT+
Sbjct: 363 DDVLGA---------LKPLLLDPEKHKIGQNIKYDYQVL----RRAGID--MQGIWCDTM 407

Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHR 155
             +   +P  +   L+SL   +   + HR
Sbjct: 408 LASYLLNPTRTSQGLDSLAVEF---LDHR 433


>gi|326470961|gb|EGD94970.1| RNA exonuclease Rex2 [Trichophyton tonsurans CBS 112818]
 gi|326482205|gb|EGE06215.1| RNA exonuclease Rex2 [Trichophyton equinum CBS 127.97]
          Length = 188

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 13/121 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGR---KNS 56
           ++++    +  D E TGLD  NDRI++I                F+  +        + +
Sbjct: 3   LQRSSDPLVWIDCEMTGLDPANDRILQICCYITDAQLNLLEPEGFEAVVHQPQEVLDRMN 62

Query: 57  PEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINA 108
              +  H   G+T   L    +      +   +       ++ A    ++   D  F+  
Sbjct: 63  AWCIDTHGRSGLTAAVLASPTTAEEAARDLLAYIKQYVPTQRTALLAGNSVHADRAFLAQ 122

Query: 109 E 109
            
Sbjct: 123 P 123


>gi|119575218|gb|EAW54831.1| polymerase (DNA directed), epsilon, isoform CRA_b [Homo sapiens]
          Length = 2293

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 229 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 287

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKD---- 116
                  + ++P  + +   +++   E +    + +N   FD  F+ A            
Sbjct: 288 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMQQE 343

Query: 117 -----------PLDPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 344 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 403

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 404 MATEQPQTLATYSVSDAVATYYLYMKYV 431


>gi|30039661|gb|AAP12650.1| polymerase (DNA directed), epsilon [Homo sapiens]
          Length = 2265

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 251 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 309

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKD---- 116
                  + ++P  + +   +++   E +    + +N   FD  F+ A            
Sbjct: 310 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMQQE 365

Query: 117 -----------PLDPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 366 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 425

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 426 MATEQPQTLATYSVSDAVATYYLYMKYV 453


>gi|62198237|ref|NP_006222.2| DNA polymerase epsilon catalytic subunit A [Homo sapiens]
 gi|116241339|sp|Q07864|DPOE1_HUMAN RecName: Full=DNA polymerase epsilon catalytic subunit A; AltName:
           Full=DNA polymerase II subunit A
 gi|225000184|gb|AAI72436.1| Polymerase (DNA directed), epsilon [synthetic construct]
          Length = 2286

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 272 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 330

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKD---- 116
                  + ++P  + +   +++   E +    + +N   FD  F+ A            
Sbjct: 331 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMQQE 386

Query: 117 -----------PLDPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 387 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 446

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 447 MATEQPQTLATYSVSDAVATYYLYMKYV 474


>gi|3192938|gb|AAC19148.1| DNA polymerase epsilon, catalytic polypeptide [Homo sapiens]
          Length = 2286

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 272 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 330

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKD---- 116
                  + ++P  + +   +++   E +    + +N   FD  F+ A            
Sbjct: 331 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMQQE 386

Query: 117 -----------PLDPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 387 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 446

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 447 MATEQPQTLATYSVSDAVATYYLYMKYV 474


>gi|116626444|ref|YP_828600.1| DNA polymerase B region [Candidatus Solibacter usitatus Ellin6076]
 gi|116229606|gb|ABJ88315.1| DNA polymerase B region [Candidatus Solibacter usitatus Ellin6076]
          Length = 784

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 27/117 (23%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  + +R++ FD+ETTGLD+  DRI  +                    P+G     E L+
Sbjct: 148 LTFDHLRRLQFDLETTGLDAGRDRIFMVAV----------------RDPSGA---AETLE 188

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAK-FDVGFINAELQRINKD 116
           + G      +   + + +           + + I  HN   FD+ F++   +R+   
Sbjct: 189 VEG------EGDAAEADLIRRLVARIQAADPDVIENHNLHGFDLPFLDRRARRLGVP 239


>gi|332308028|ref|YP_004435879.1| hypothetical protein Glaag_3682 [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175357|gb|AEE24611.1| hypothetical protein Glaag_3682 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 165

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 27/162 (16%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEALKLHGIT 66
            I+ DIE +G  +     IE+G    +D    +  F   + P    +  S EA  LHGI+
Sbjct: 8   PIILDIEASGFGA-TSYPIEVGV--AMDN---DTRFCRLIRPQTDWQHWSEEAQGLHGIS 61

Query: 67  DEFLKDKP-SFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPSR 122
              L +K      +  E     + + A    W+      D  +++   +           
Sbjct: 62  RSMLLEKGAPVQQVCIELNQLLSGRTAYSDGWV-----VDSPWLSRLYESAGMRMAFELS 116

Query: 123 IIDTLSIARRK---HPSSRNDLN-SLCKRYGITISHRSKHGA 160
            +D +   R+    H +    L+ +  KR      HR+ H A
Sbjct: 117 QLDIILNERQMDNWHETKSRILSQTKAKR------HRASHDA 152


>gi|329295775|ref|ZP_08253111.1| Orn [Plautia stali symbiont]
          Length = 182

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          M   N+   I  D+E TGLD + DRIIEI  +
Sbjct: 1  MTAGNENNLIWIDLEMTGLDPERDRIIEIATI 32


>gi|319900544|ref|YP_004160272.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
 gi|319415575|gb|ADV42686.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
          Length = 952

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG +     ++ +   +  +        Q +  P      P       I +E LK
Sbjct: 384 IDTETTGTEPMEAELVGMSFSDAEN--------QAYYVP----VPP-------IREEALK 424

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                  I +E    +  + +  +  N K+D+  +     ++           DT+    
Sbjct: 425 -------IVNELRPLYENEKSLKVGQNIKYDMIVLQNYEIQVKGPLF------DTMLAHY 471

Query: 132 RKHPSSRNDLNSLCKRY 148
              P  R++++ L + Y
Sbjct: 472 VLQPELRHNMDYLAEIY 488


>gi|119575219|gb|EAW54832.1| polymerase (DNA directed), epsilon, isoform CRA_c [Homo sapiens]
          Length = 2216

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 202 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 260

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKD---- 116
                  + ++P  + +   +++   E +    + +N   FD  F+ A            
Sbjct: 261 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMQQE 316

Query: 117 -----------PLDPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 317 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 376

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 377 MATEQPQTLATYSVSDAVATYYLYMKYV 404


>gi|5532283|gb|AAD44691.1| DNA polymerase epsilon catalytic subunit protein isoform b [Homo
           sapiens]
          Length = 2286

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 272 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 330

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKD---- 116
                  + ++P  + +   +++   E +    + +N   FD  F+ A            
Sbjct: 331 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMQQE 386

Query: 117 -----------PLDPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 387 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 446

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 447 MATEQPQTLATYSVSDAVATYYLYMKYV 474


>gi|302923273|ref|XP_003053640.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734581|gb|EEU47927.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 216

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 14/145 (9%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLC-PNGR--KNSPE 58
            +    +  D E TGLD  ND I+EI  +      +      F   +  P  R  +    
Sbjct: 15  ASDDPLVWIDCEMTGLDQDNDEILEIYCIITTGNLEILDEEGFHAIIHWPQSRLDQMDDW 74

Query: 59  ALKLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFI-NAE 109
             K H   G+T   L    +     S  +D+      + +      ++   D  F+    
Sbjct: 75  CTKTHADSGLTAAVLASTTTPEEAASALYDYVTRFIPDRRRGLLAGNSVHCDRAFLRREP 134

Query: 110 LQRINKDPLDPSRIIDTLSIARRKH 134
            +++ K        + ++  A R+ 
Sbjct: 135 YRKVMKHLHHRILDVSSIKEAARRW 159


>gi|861144|emb|CAA50496.1| orf1 [Synechococcus sp.]
          Length = 157

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 11/85 (12%)

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN----DLNSLCKRY 148
             +AH        + A      +        + TL   R    + ++     +  L   Y
Sbjct: 8   YLVAHKQP-----LIANGSVAGRCQKQQRPWLCTLEDVRWPEEAQQSASQASVIDLALAY 62

Query: 149 GITISHRSKHGALLDSHLLSDVYIK 173
           GI +   S H AL D   L++V+ +
Sbjct: 63  GIPVW--SAHRALTDCMYLAEVFQR 85


>gi|323947989|gb|EGB43983.1| exonuclease RNase T and DNA polymerase III [Escherichia coli H120]
          Length = 823

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 35/190 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALKLHGITDE 68
            D+ET G +  +  II IGA+            F   +     G     + +K       
Sbjct: 645 IDLETMGKNP-DAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIK------W 697

Query: 69  FLK-----------DKPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINAELQRI 113
           +LK           D+        +  +F +E + E+  H       FD   +    +R 
Sbjct: 698 WLKQSREAQSAIMTDEIPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILRRSYERQ 757

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD---- 169
                 P R  +   +          D ++   R  I      +H AL D+   +     
Sbjct: 758 GIP--CPWRYYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDARYQAKYVSA 811

Query: 170 VYIKMMVGGS 179
           ++ K++   +
Sbjct: 812 IWQKLIPSQA 821


>gi|227357138|ref|ZP_03841507.1| exoribonuclease II [Proteus mirabilis ATCC 29906]
 gi|227162670|gb|EEI47637.1| exoribonuclease II [Proteus mirabilis ATCC 29906]
          Length = 192

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 62/188 (32%), Gaps = 51/188 (27%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + K++   I  D+E TGLD + DRIIEI  +            Q+ +   G         
Sbjct: 12  MSKSENNLIWIDLEMTGLDPERDRIIEIATIVTDP--------QLNILAEGPVI-----A 58

Query: 62  LHGITDEFLK------------------------DKPSFSSIFSEFWD-FFNEQNAEWIA 96
           +H  +D+ L                         D  +      EF + +  +  +    
Sbjct: 59  VHQ-SDKLLASMDEWNTTTHTASGLVQRVKESQYDDAAAQQATIEFLEKWVPQGASPICG 117

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHR 155
           ++   D  F+   +  + K        + TL  +ARR  P        + + +    +  
Sbjct: 118 NSVGQDRRFLFRYMPELEKYFHYRYLDVSTLKELARRWKPE-------ILEGFKKNNT-- 168

Query: 156 SKHGALLD 163
             H AL D
Sbjct: 169 --HQALDD 174


>gi|225551906|ref|ZP_03772846.1| DNA polymerase I family protein [Borrelia sp. SV1]
 gi|225370904|gb|EEH00334.1| DNA polymerase I family protein [Borrelia sp. SV1]
          Length = 908

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 52/145 (35%), Gaps = 34/145 (23%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K +    D ET+ LD+   ++I I             +F+ F    G     EA      
Sbjct: 339 KAKYTSIDTETSSLDTYTAKLIGISI-----------SFKEF---EGYYIPIEA------ 378

Query: 66  TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                K K       I  +F + F E N + I  N KFD   +          P+ P   
Sbjct: 379 -----KGKIYIEKNYIIQKFNNLF-ESNPKIIGQNYKFDYKILKNN----GFSPIPP--Y 426

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
            DT+  A     +S+  L+ L ++Y
Sbjct: 427 FDTMIAAYLIDTNSKVSLDFLAEKY 451


>gi|119575221|gb|EAW54834.1| polymerase (DNA directed), epsilon, isoform CRA_d [Homo sapiens]
          Length = 2243

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 229 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 287

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKD---- 116
                  + ++P  + +   +++   E +    + +N   FD  F+ A            
Sbjct: 288 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMQQE 343

Query: 117 -----------PLDPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 344 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 403

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 404 MATEQPQTLATYSVSDAVATYYLYMKYV 431


>gi|5532282|gb|AAD44690.1| DNA polymerase epsilon catalytic subunit protein isoform a [Homo
           sapiens]
          Length = 2297

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 283 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 341

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKD---- 116
                  + ++P  + +   +++   E +    + +N   FD  F+ A            
Sbjct: 342 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMQQE 397

Query: 117 -----------PLDPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 398 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 457

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 458 MATEQPQTLATYSVSDAVATYYLYMKYV 485


>gi|26553581|ref|NP_757515.1| exonuclease [Mycoplasma penetrans HF-2]
 gi|26453587|dbj|BAC43919.1| exonuclease: possibly DNA polymerase III [Mycoplasma penetrans
           HF-2]
          Length = 178

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 64/175 (36%), Gaps = 20/175 (11%)

Query: 8   RKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + ++FDI+TT  GLDS+   I+   A   ++    ++    F     +K     ++ + I
Sbjct: 10  KIVIFDIKTTEEGLDSE---ILYFAARTYINNEMVSK--HNFFIATDKKIPGNIIRKYRI 64

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120
           T+     K   S    +     N     Q+A    +N   F    +    +    +    
Sbjct: 65  TN-----KKIESEGIDKMSALENMTYIFQDAILFTYNGDNFVFPLLEKIYKECGYNL--Q 117

Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              ID L +A++         L  L  + G+        G+   + +L  ++ ++
Sbjct: 118 ISEIDALKLAKQIIGFDDDISLEELATKLGVRYEEERLLGSPYTTMVLEKIWFRL 172


>gi|89075319|ref|ZP_01161741.1| oligoribonuclease [Photobacterium sp. SKA34]
 gi|90581256|ref|ZP_01237053.1| oligoribonuclease [Vibrio angustum S14]
 gi|89048868|gb|EAR54437.1| oligoribonuclease [Photobacterium sp. SKA34]
 gi|90437495|gb|EAS62689.1| oligoribonuclease [Vibrio angustum S14]
          Length = 181

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 57/179 (31%), Gaps = 33/179 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-- 59
           +  +    I  D+E TGLD +  +IIEI  +                 P    + PEA  
Sbjct: 1   MTISDKNLIWIDLEMTGLDPETHKIIEIATIVTDPQLNILAE-----GPVLAIHQPEAEL 55

Query: 60  -------LKLH-------GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
                     H        I    + ++ + +   +    +  +  +    ++   D  F
Sbjct: 56  DKMDDWCTNTHTNSGLVERIRKSTVTEQQAVAQTIAFLEQWVPKGASPICGNSIGQDRRF 115

Query: 106 INAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   +  + +        + TL  + RR  P     L+ L K+          H AL D
Sbjct: 116 LYKHMPELEQYFHYRYLDVSTLKELTRRWKPEL---LDGLNKK--------GSHLALDD 163


>gi|161984789|ref|YP_410541.2| oligoribonuclease [Shigella boydii Sb227]
 gi|320183731|gb|EFW58568.1| 3'-to-5' oligoribonuclease (orn) [Shigella flexneri CDC 796-83]
 gi|320187043|gb|EFW61754.1| 3'-to-5' oligoribonuclease (orn) [Shigella flexneri CDC 796-83]
 gi|332087020|gb|EGI92154.1| exonuclease family protein [Shigella boydii 3594-74]
          Length = 181

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 57/190 (30%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 45

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 46  IAVHQ-SDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+S         +
Sbjct: 105 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LDS--------FT 153

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 154 KQGTHQAMDD 163


>gi|5532284|gb|AAD44692.1| DNA polymerase epsilon catalytic subunit protein isoform c [Homo
           sapiens]
          Length = 2243

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 229 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 287

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKD---- 116
                  + ++P  + +   +++   E +    + +N   FD  F+ A            
Sbjct: 288 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMQQE 343

Query: 117 -----------PLDPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 344 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 403

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 404 MATEQPQTLATYSVSDAVATYYLYMKYV 431


>gi|197287169|ref|YP_002153041.1| oligoribonuclease [Proteus mirabilis HI4320]
 gi|194684656|emb|CAR46589.1| oligoribonuclease [Proteus mirabilis HI4320]
          Length = 181

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 61/188 (32%), Gaps = 51/188 (27%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + K++   I  D+E TGLD + DRIIEI  +            Q+ +   G         
Sbjct: 1   MSKSENNLIWIDLEMTGLDPERDRIIEIATIVTDP--------QLNILAEGPVI-----A 47

Query: 62  LHGITDEFLK------------------------DKPSFSSIFSEFWD-FFNEQNAEWIA 96
           +H  +D+ L                         D  +      EF + +  +  +    
Sbjct: 48  VHQ-SDKLLASMDEWNTTTHTASGLVQRVKESQYDDAAAQQATIEFLEKWVPQGASPICG 106

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHR 155
           ++   D  F+   +  + K        + TL  +ARR  P     L             +
Sbjct: 107 NSVGQDRRFLFRYMPELEKYFHYRYLDVSTLKELARRWKPEI---LE--------GFKKK 155

Query: 156 SKHGALLD 163
           + H AL D
Sbjct: 156 NTHQALDD 163


>gi|183602498|ref|ZP_02963863.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683541|ref|YP_002469924.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190572|ref|YP_002967966.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|183218139|gb|EDT88785.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621191|gb|ACL29348.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis AD011]
 gi|240248964|gb|ACS45904.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|295793559|gb|ADG33094.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis V9]
          Length = 217

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 22/168 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN---SPEALKLH 63
           R I  D E TGLD  +D + E+  V    + +  ++   + + P+             +H
Sbjct: 16  RMIWIDCEMTGLDIFHDELCEVSVVPTDFELNVLDKGIDLVIKPSEAAVAHMDDFVRAMH 75

Query: 64  ---GITDEF---LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD 116
              G+ DE+   L  + +   +      F  +     +A N+   D  F++  +  + + 
Sbjct: 76  TRSGLIDEWENGLSVQEAERQVIDYVQQFIPQGVKPLLAGNSVGSDKKFLDRFMPNLMEH 135

Query: 117 PLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                  + T+  +ARR +P            Y         H A  D
Sbjct: 136 LHYRVIDVSTIKELARRWYP----------AVYENRPPKNGGHRAWAD 173


>gi|291536099|emb|CBL09211.1| DNA polymerase family B, exonuclease domain [Roseburia intestinalis
           M50/1]
          Length = 367

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 36/121 (29%), Gaps = 25/121 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FDIETTG  +    +  IG     +       F              A      T   
Sbjct: 26  LFFDIETTGFSAARTSLYLIGCAARKENLLIVDQF-------------FAE-----TPAD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIIDTLS 128
                  S +   F D+    +     +   FD+ ++  + Q+    +P      +D   
Sbjct: 68  ------ESDVLHAFLDYLQNFDTIITFNGIGFDIPYLTNKCQKYKIPEPFSAYEYVDIYK 121

Query: 129 I 129
           +
Sbjct: 122 M 122


>gi|240146043|ref|ZP_04744644.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|257201859|gb|EEV00144.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
          Length = 367

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 36/121 (29%), Gaps = 25/121 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FDIETTG  +    +  IG     +       F              A      T   
Sbjct: 26  LFFDIETTGFSAARTSLYLIGCAARKENLLIVDQF-------------FAE-----TPAD 67

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIIDTLS 128
                  S +   F D+    +     +   FD+ ++  + Q+    +P      +D   
Sbjct: 68  ------ESDVLHAFLDYLQNFDTIITFNGIGFDIPYLTNKCQKYKIPEPFSAYEYVDIYK 121

Query: 129 I 129
           +
Sbjct: 122 M 122


>gi|229597251|ref|YP_001908888.2| oligoribonuclease [Erwinia tasmaniensis Et1/99]
          Length = 187

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 60/179 (33%), Gaps = 33/179 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFL-CPNGRKNSP 57
           +  N    I  D+E TGL+ + DRIIEI  +              F V            
Sbjct: 1   MTANANNLIWIDLEMTGLNPEQDRIIEIATLVTDADLNILAEGPVFAVHQSDAQLGLMDE 60

Query: 58  EALKLHGITDEFLKDKPSFSSI---FSEF--WDFFNEQ----NAEWIAHNAKFDVGFINA 108
             ++ H  T+  L ++   S +    +E    +F  +     ++    ++   D  F+  
Sbjct: 61  WNVRTH--TNSGLVERVKASQVDDRAAELATIEFLKQWVPANSSPICGNSIGQDRRFLFK 118

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGALLD 163
            +  +  +     R +D             + L  L +R+   I      +  H AL D
Sbjct: 119 YMPEL--EAYFHYRYLDV------------STLKELARRWKPEILPGFKKQGTHQALDD 163


>gi|242782588|ref|XP_002480030.1| RNA exonuclease, putative [Talaromyces stipitatus ATCC 10500]
 gi|218720177|gb|EED19596.1| RNA exonuclease, putative [Talaromyces stipitatus ATCC 10500]
          Length = 449

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 71/205 (34%), Gaps = 24/205 (11%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKL 62
           + K + +  D E  GL   +D ++ + +V++L    T  T     + P  +  S  +  +
Sbjct: 214 QRKRKIVAIDCEMVGLWKGSDSVVLLCSVDVL----TGETLLNTLVNPVSKVKSWRST-V 268

Query: 63  HGITDEFLKDKPSFSSIF-------SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
            G+T + +                    W + + +    + H  + D+  +     RI  
Sbjct: 269 SGVTRKAMNVAIERGQALRGWPAARKALWQYVDTE-TILVGHALQNDLNVLGIFHPRIVD 327

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYI 172
             +  ++ +  L    +K P +   L  L   +    I    R  H  L D+    +V I
Sbjct: 328 TAILAAQAV-FLDHQGKKFPQT-YGLKKLLACFVNMAIQTGKRG-HDCLEDTLATREVAI 384

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEK 197
             M          KT   R F E +
Sbjct: 385 WCMRN----PESLKTWGSRTFAEYE 405


>gi|61866894|ref|XP_583075.1| PREDICTED: interferon stimulated exonuclease isoform 1 [Bos taurus]
 gi|297487921|ref|XP_002696560.1| PREDICTED: interferon stimulated exonuclease-like [Bos taurus]
 gi|296475614|gb|DAA17729.1| interferon stimulated exonuclease-like [Bos taurus]
          Length = 171

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 21/169 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E  GL     R   +    L+DY  +   +  F+ P G   +     + GIT   
Sbjct: 8   VAMDCEMVGLGPF--RESGLARCSLVDYHGSV-LYDKFIRPEG-DITDYRTPVSGITARN 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++    F+    E       +    + H+ K D   +   +            I DT + 
Sbjct: 64  MEGATPFAVARLEILQVL--KGKLVVGHDLKHDFKALKENMSDY--------AIYDTAAD 113

Query: 130 ARRKHPSS-----RNDLNSLCKR-YGITISHRSK-HGALLDSHLLSDVY 171
            R    +      R  L  L +R  G  I      H ++ D+    ++Y
Sbjct: 114 RRLWREAGLQYCRRVSLRVLSQRLLGRRIQDSVLGHNSVEDARAAMELY 162


>gi|225719666|gb|ACO15679.1| Oligoribonuclease, mitochondrial precursor [Caligus clemensi]
          Length = 230

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 58/175 (33%), Gaps = 26/175 (14%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKN------S 56
            N  R +  D E TGLD + D ++E+  +       +      + +              
Sbjct: 49  TNLRRLVWIDCEMTGLDIEKDVLMEVAVIVTDSSLREVTPGINLIIHQPDSILNAMTEFP 108

Query: 57  PEALKLHGITDE------FLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAK-FDVGFINA 108
            E   L G+T+        L++      I                +A N+   D+ F+  
Sbjct: 109 EECHALTGLTEACRASQTDLRNA--EDQICRHIRQGLSGTTGTPLLAGNSVGHDLKFLQK 166

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  +    L   +++D  SI       +++ L+   K+       +  H A+ D
Sbjct: 167 YMPAVK--DLLHYKVLDVSSINSCYQLWNKSVLHQCPKK-------KRLHRAMED 212


>gi|260579664|ref|ZP_05847528.1| oligoribonuclease [Corynebacterium jeikeium ATCC 43734]
 gi|258602206|gb|EEW15519.1| oligoribonuclease [Corynebacterium jeikeium ATCC 43734]
          Length = 190

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 23/160 (14%)

Query: 17  TGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR---KNSPEALKLH---GITDEF 69
           TGLD     ++EI  +    D +  +    + +    R   +      K+H   G+T++ 
Sbjct: 2   TGLDPDQHVLVEIAVIVTDADLTPLDEGLDLVIHATERDLARMDAVVTKMHGESGLTEQI 61

Query: 70  LKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                +      +  D+  +       A    +    D  FIN  +  +++        +
Sbjct: 62  RASDITLEEAEEQVLDYVKKHVPTAGVAPLAGNTISADRKFINRYMPHLDQYLHYRMIDV 121

Query: 125 DTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +L  +ARR +P            Y    +    H AL D
Sbjct: 122 SSLKELARRWYPH----------VYNGQPAKGMAHRALAD 151


>gi|260844574|ref|YP_003222352.1| putative exonuclease [Escherichia coli O103:H2 str. 12009]
 gi|257759721|dbj|BAI31218.1| putative exonuclease [Escherichia coli O103:H2 str. 12009]
          Length = 823

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 35/190 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALKLHGITDE 68
            D+ET G +  +  II IGA+            F   +     G     + +K       
Sbjct: 645 IDLETMGKNP-DAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIK------W 697

Query: 69  FLK-----------DKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINAELQRI 113
           +LK           D+        +  +F +E + E+      + A FD   +    +R 
Sbjct: 698 WLKQSREAQSAIMTDEIPLDDALLQLREFIDENSGEFFVQVWGNGANFDNTILRRSYERQ 757

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD---- 169
                 P R  +   +          D ++   R  I      +H AL D+   +     
Sbjct: 758 GIP--CPWRYYNDRDVRTIVELGKAIDFDA---RMAIPFEGE-RHNALDDARYQAKYVSV 811

Query: 170 VYIKMMVGGS 179
           ++ K++   +
Sbjct: 812 IWQKLIPSQA 821


>gi|225554428|gb|EEH02726.1| RNA exonuclease [Ajellomyces capsulatus G186AR]
          Length = 736

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 69/211 (32%), Gaps = 18/211 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E    +  + ++  +  V        +      + P+         +  GIT E L+
Sbjct: 350 LDCEMCITEGGSSQLTRVSLVSWDGEVVLDD----LVKPD-EPIIDYLTRFSGITKEMLE 404

Query: 72  DKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              +    +  +    F  +    I H+   D+  +             P  +  ++   
Sbjct: 405 PVTTRLPDVQQKLLTLFTPR-TILIGHSLNSDLSAL---------KLTHPFIVDTSIIYP 454

Query: 131 RRKHPSSRNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             + P  ++ L  L ++Y G  I      H ++ D+  + ++  +    G +      +N
Sbjct: 455 HPRGPPLKSSLKWLSQKYLGKEIQKGQDGHDSIEDARAVLELVKQKCEKGERWGTCDASN 514

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           E  F +  + TVP  +     K   T    +
Sbjct: 515 ETIFRRLARATVPGKTASGATKEGRTGAVAD 545


>gi|167970957|ref|ZP_02553234.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|168308368|ref|ZP_02691043.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|171902677|gb|EDT48966.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|186700942|gb|EDU19224.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 375

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 60/179 (33%), Gaps = 24/179 (13%)

Query: 5   NKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +    +  DIE T  DSK + RII+     L         F     P    NS       
Sbjct: 12  DDQDLVFIDIEAT--DSKGEQRIIQFSGYRLNIKKNKIFNFNKKFNPEQEINS------- 62

Query: 64  GITDEF--------LKDKPSF-SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            I            ++  P        E + F   +NA  I     FD+  ++      N
Sbjct: 63  RIKTLLNFNKNFNNIEQMPKLDKQAAREIYCFV--KNAIVITF-TDFDIKKMHELFTYYN 119

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            D  +     D      +K  +     L SL    GI I+    H AL D+ +L ++++
Sbjct: 120 FD-FEKIVYFDVYKFFEKKLQTKSVPSLFSLGILSGIKINFFKLHNALYDAFILKEIFM 177


>gi|194855218|ref|XP_001968498.1| GG24904 [Drosophila erecta]
 gi|190660365|gb|EDV57557.1| GG24904 [Drosophila erecta]
          Length = 348

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 24/144 (16%)

Query: 9   KIVFDIETTGLDSKNDR---IIEIGAVELLDYSKTN---------------RTFQVF--L 48
             V D+ET+ L +  +    I E+                           R       L
Sbjct: 20  FAVLDLETSNLPAYQNNRVGITELCIYAFEAALLKKEKKEQEEDQELPAAPRVLHKLNLL 79

Query: 49  CPNGRKNSPEALKLHGITDEFLKDKPSFS-SIFSEFWDFFNEQNAE--WIAHN-AKFDVG 104
                K  PEA ++ G+++  L+ +             F     +    +AHN   FD  
Sbjct: 80  FQPSMKVYPEAERITGLSNYILERESKLDVDAAQLINGFLKHLPSPVCLVAHNGWGFDFP 139

Query: 105 FINAELQRINKDPLDPSRIIDTLS 128
            +    +++N +       +D+L 
Sbjct: 140 ILRQIFEKLNVELPQSLTCVDSLR 163


>gi|110346113|gb|ABG72350.1| oligoribonuclease [Escherichia coli 536]
          Length = 229

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 49  MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 93

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 94  IAVHQ-SDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 152

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 153 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 201

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 202 KQGTHQAMDD 211


>gi|296119758|ref|ZP_06838312.1| DNA polymerase III, epsilon subunit [Corynebacterium ammoniagenes
          DSM 20306]
 gi|295966912|gb|EFG80183.1| DNA polymerase III, epsilon subunit [Corynebacterium ammoniagenes
          DSM 20306]
          Length = 89

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 39 KTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW 94
          +  +T+   + P     +     +H ITD  +   P+F+ I +        +    
Sbjct: 8  QVEKTWDTLINPERDIANSF---VHKITDVDVAQAPTFADIANTVASLLAGRTMLL 60


>gi|238909183|ref|YP_002939650.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
 gi|238873420|gb|ACR73129.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
          Length = 724

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 28/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG--ITDE 68
           V D+ETTGLD  ND ++ I                    P+        +  +   + ++
Sbjct: 86  VLDVETTGLDVYNDILVGICLY----------------NPD---LPSFYVPFNHTDLQNK 126

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127
            ++ + +     +    +    + + I HN KFD   +     QRI       +   DT 
Sbjct: 127 RVEGQMTEEECKAVMLPYLANGSLKCINHNIKFDDKVVTFQWGQRI------ANVWWDTN 180

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                 + + ++ L  +  +Y
Sbjct: 181 IAGWVLNENEKHGLKPMYNKY 201


>gi|13357669|ref|NP_077943.1| hypothetical protein UU112 [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168282219|ref|ZP_02689886.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|170762108|ref|YP_001752195.1| hypothetical protein UPA3_0115 [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|14195390|sp|Q9PR32|Y112_UREPA RecName: Full=Uncharacterized protein UU112
 gi|11356886|pir||B82933 hypothetical protein UU112 [imported] - Ureaplasma urealyticum
 gi|6899068|gb|AAF30518.1|AE002111_7 unique hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827685|gb|ACA32947.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|182675770|gb|EDT87675.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
          Length = 375

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 60/179 (33%), Gaps = 24/179 (13%)

Query: 5   NKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +    +  DIE T  DSK + RII+     L         F     P    NS       
Sbjct: 12  DDQDLVFIDIEAT--DSKGEQRIIQFSGYRLNIKKNKIFNFNKKFNPEQEINS------- 62

Query: 64  GITDEF--------LKDKPSF-SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            I            ++  P        E + F   +NA  I     FD+  ++      N
Sbjct: 63  RIKTLLNFNKNFNNIEQMPKLDKQAAREIYCFV--KNAIVITF-TDFDIKKMHELFTYYN 119

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            D  +     D      +K  +     L SL    GI I+    H AL D+ +L ++++
Sbjct: 120 FD-FEKIVYFDVYKFFEKKLQTKSVPSLFSLGILSGIKINFFKLHNALYDAFILKEIFM 177


>gi|296454705|ref|YP_003661848.1| RNase T/DNA polymerase III exonuclease [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296184136|gb|ADH01018.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 216

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 59/169 (34%), Gaps = 23/169 (13%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP---EALKL 62
           R I  D E TGLD    D ++E+  V    D +  +      + P+ +  +       ++
Sbjct: 16  RLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSEKAVNHMNDFVRQM 75

Query: 63  H---GITDEF---LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           H   G+ +E+   L    +   +      F  E     +A N    D  F++  +  +  
Sbjct: 76  HTRSGLINEWENGLSLAEAEQKVTEYVLRFTPEGVRPLLAGNTIGSDKKFLDHYMPGLMS 135

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                S  + TL  +ARR +P            Y         H AL D
Sbjct: 136 HLHYRSVDVSTLKELARRWYP----------AVYENRPPKNGGHRALAD 174


>gi|146311913|ref|YP_001176987.1| exonuclease, RNase T and DNA polymerase III [Enterobacter sp. 638]
 gi|145318789|gb|ABP60936.1| Exonuclease, RNase T and DNA polymerase III [Enterobacter sp. 638]
          Length = 834

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 51/178 (28%), Gaps = 37/178 (20%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFL----------CPNGRKN----- 55
            D+ET G +     I+ IGAV       +T   F   +           P+         
Sbjct: 654 LDLETMG-NKALAPIVSIGAVFFDPATGETGGEFYQVISLESSMYFGARPDADTILWWLK 712

Query: 56  -SPEA-LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA------EWIAHNAKFDVGFIN 107
            SPEA   +       + D   F      F  F  +  A      +   + + FD   + 
Sbjct: 713 QSPEARSAI------LVDDAVGFVEALENFNGFVADNAANDSASVQLWGNGSSFDCTILE 766

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           +  +  +            +             LN+   RY I       H AL D+ 
Sbjct: 767 SAFELADTPFPIKHWNFRDVRTVVAL--GKAVGLNA---RYEIPFEGDQ-HNALDDAR 818


>gi|299144369|ref|ZP_07037449.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386
          str. F0131]
 gi|298518854|gb|EFI42593.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386
          str. F0131]
          Length = 312

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 23/39 (58%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          I KN    IV DIETTGL  K D I  IG +E+   +KT
Sbjct: 20 ILKNFKNSIVLDIETTGLSRKYDAIFLIGIIEIEKNTKT 58


>gi|213401823|ref|XP_002171684.1| oligoribonuclease [Schizosaccharomyces japonicus yFS275]
 gi|211999731|gb|EEB05391.1| oligoribonuclease [Schizosaccharomyces japonicus yFS275]
          Length = 187

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 64/179 (35%), Gaps = 31/179 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNG---RKNS 56
           M    +   +  D E TGL+   D ++E+ A+    D +     F+  +  +    R+ +
Sbjct: 1   MTAALRSPLVWVDCEMTGLEVGKDVLMEVAAIITDGDLNPIEEKFEETIHVDDDKLRQMN 60

Query: 57  PEALKLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFI-- 106
              +  H   G+T+   + K S + +  +  ++        + A    ++   DV F+  
Sbjct: 61  DWCIDHHGASGLTERCRQCKQSVNQVEQKLLNYIQKYIPRRREALIAGNSVHADVRFLTV 120

Query: 107 --NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                ++ ++   +D S I +     R   P  +  L                H AL D
Sbjct: 121 EMPKVIEHLHYRIIDVSTIKELCRRWRPDIPPFKKRL---------------AHRALSD 164


>gi|154271314|ref|XP_001536510.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150409180|gb|EDN04630.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 805

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 68/211 (32%), Gaps = 18/211 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E    +  + ++  +  V        +      + P+ +       +  GIT E L+
Sbjct: 437 LDCEMCITEGGSSQLTRVSLVSWDGEVVLDD----LVKPD-KPIIDYLTRFSGITKEMLE 491

Query: 72  DKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              +    +  +       +    I H+   D+  +             P  +  ++   
Sbjct: 492 PVTTRLPDVQQKLLTLLTPR-TILIGHSLNSDLSAL---------KLTHPFIVDTSIIYP 541

Query: 131 RRKHPSSRNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188
             + P  ++ L  L ++Y G  I      H ++ D+  + ++  +    G        +N
Sbjct: 542 HPRGPPLKSSLKWLSQKYLGKEIQKGQDGHDSIEDARAVLELVKQKCEKGELWGTCDASN 601

Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219
           E  F +  + TVP  +     K   T    +
Sbjct: 602 ETIFRRLARATVPGKTASGATKEGRTGAVAD 632


>gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
 gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
          Length = 942

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 40/132 (30%), Gaps = 28/132 (21%)

Query: 9   KIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
              FD ETTGL+     +     A++  +          ++     K  P          
Sbjct: 365 FAAFDCETTGLNPLEAELAGFSLALKAEEA--------FYI---PVKLPP---------P 404

Query: 68  EFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           E     P         SE    + ++N   I HN KFD       ++        P  I 
Sbjct: 405 ELQSQAPQPMPLEKAVSELARLWQQKNLTIIMHNGKFDY----QAMRTAGVFEKTPCAIF 460

Query: 125 DTLSIARRKHPS 136
           DT+  A    P 
Sbjct: 461 DTMIAAWLLDPD 472


>gi|298708280|emb|CBJ48343.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 983

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 25/143 (17%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           +   + P  +       +  GIT E LK    +      E   F + +    + H+   D
Sbjct: 579 YDKLVKPTLKVTDYN-TQFSGITPEMLKGVTRTLRDAQREILSFVDAE-TYLVGHSLDSD 636

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR-----NDLNSLCK-RYGITISHRS 156
           +  +    +R+          IDT       +P+ R     N L  L K   G  I    
Sbjct: 637 LRALRLVHRRL----------IDTSE----LYPNLRGIPFKNGLRVLSKTVLGRAIQGGD 682

Query: 157 K-HGALLDSHLLSDV-YIKMMVG 177
             H +  D+    ++  +KM  G
Sbjct: 683 AGHDSGEDAFASLELALLKMHRG 705


>gi|289178310|gb|ADC85556.1| Oligoribonuclease [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 237

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 22/168 (13%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN---SPEALKLH 63
           R I  D E TGLD  +D + E+  V    + +  ++   + + P+             +H
Sbjct: 36  RMIWIDCEMTGLDIFHDELCEVSVVPTDFELNVLDKGIDLVIKPSEAAVAHMDDFVRAMH 95

Query: 64  ---GITDEF---LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD 116
              G+ DE+   L  + +   +      F  +     +A N+   D  F++  +  + + 
Sbjct: 96  TRSGLIDEWENGLSVQEAERQVIDYVQQFIPQGVKPLLAGNSVGSDKKFLDRFMPNLMEH 155

Query: 117 PLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                  + T+  +ARR +P            Y         H A  D
Sbjct: 156 LHYRVIDVSTIKELARRWYP----------AVYENRPPKNGGHRAWAD 193


>gi|217328830|ref|ZP_03444911.1| exonuclease family protein [Escherichia coli O157:H7 str. TW14588]
 gi|217318177|gb|EEC26604.1| exonuclease family protein [Escherichia coli O157:H7 str. TW14588]
          Length = 744

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 45/195 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAV--------------ELLD----YSKTNR-TFQVFLCPNG 52
            D+ET G +  +  II IGA+              + +D        +R T + +L  + 
Sbjct: 566 IDLETMGKNP-DAPIISIGAIFFDPQTGDMGPEFSKTIDLDTAGGVIDRDTMKWWLKQSR 624

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINA 108
              S               D+        +  +F +E + E+  H       FD   +  
Sbjct: 625 EAQSAIMT-----------DEIPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILRR 673

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             +R       P R  +   +          D ++   R  I      +H AL D+   +
Sbjct: 674 SYERQGSP--CPWRYYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDARYQA 727

Query: 169 D----VYIKMMVGGS 179
                ++ K++   +
Sbjct: 728 KYVSAIWQKLIPSQA 742


>gi|19115627|ref|NP_594715.1| exonuclease Rex3 (predicted) [Schizosaccharomyces pombe 972h-]
 gi|74698333|sp|Q9P7H2|REXO3_SCHPO RecName: Full=RNA exonuclease 3
 gi|7160232|emb|CAB76270.1| exonuclease Rex3 (predicted) [Schizosaccharomyces pombe]
          Length = 540

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 63/175 (36%), Gaps = 28/175 (16%)

Query: 6   KMRKIVFDIE----TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++     D E    T G+        E+  + ++          VF+ P G+  S    +
Sbjct: 379 QLSHCALDCELCYTTNGM--------ELARLTVVAKESII--MDVFIKPKGKILSLN-TR 427

Query: 62  LHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
             GI D   L+   +   ++ +  +    +N   I H  + D+  +    +R+       
Sbjct: 428 FSGIHDAKELESGITMDQMYIKIKELGMNKNTILIGHGLENDLNAMRLIHKRV------- 480

Query: 121 SRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH-LLSDVYIK 173
              IDT L     + P  R  L  L K+Y  T    S H +  D+   L  V+ K
Sbjct: 481 ---IDTALLFTHARGPPFRYSLKYLTKKYLGTTIQTSTHDSEEDAVSALQLVFYK 532


>gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180]
 gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180]
          Length = 911

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 68/211 (32%), Gaps = 40/211 (18%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD+    ++ +                  L P      P A    G  D+  
Sbjct: 336 AFDTETTALDAMQAELVGV---------------SFALEPGRAAYVPLAHVYPGAPDQLD 380

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +D+     + +       +     +  N K+D+  +         D        DTL  +
Sbjct: 381 RDR-----VLARLKPLLEDPGRPKVGQNLKYDMSVLAR------YDIALRGIAHDTLLES 429

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190
                ++R+DL+SL KR+   + H        D+    DV  K   G  QI F     E 
Sbjct: 430 YVLDSTARHDLDSLAKRF---LDH--------DTIRFEDVAGK---GAKQIGFDQVPLEQ 475

Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
                 +     + L +  +P    +   E 
Sbjct: 476 AGPYAAEDAEVTLRLHRVFQPRLAAVPALER 506


>gi|146329636|ref|YP_001209796.1| oligoribonuclease [Dichelobacter nodosus VCS1703A]
 gi|166216257|sp|A5EY84|ORN_DICNV RecName: Full=Oligoribonuclease
 gi|146233106|gb|ABQ14084.1| oligoribonuclease [Dichelobacter nodosus VCS1703A]
          Length = 180

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 33/178 (18%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRK 54
           M +KN +  +  D+E TGLD ++D IIEI  +        L        +Q    P   +
Sbjct: 1   MDKKNNL--VWIDLEMTGLDPQHDEIIEIATIVTDAQLNILAEGPVIAVYQ--PEPILAQ 56

Query: 55  NSPEALKLHGITD--EFLKDKPSFSSIFSE-----FWDFFNEQN-AEWIAHNAKFDVGFI 106
                 K HG +   E ++   SF+++ +E     F + ++E+  +    ++   D  F+
Sbjct: 57  MDAWNQKHHGASGLIERVRQS-SFNTLEAEAQTLSFLEQYSEKGRSPICGNSICQDRRFL 115

Query: 107 NAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + R+       +  + T+  +  R +P          + Y       + H AL D
Sbjct: 116 SRLMPRLEAFFHYRNLDVSTIKELVARWYP----------EHY---FHKNTTHQALQD 160


>gi|29126874|gb|AAH48166.1| Polymerase (DNA directed), epsilon [Mus musculus]
 gi|38969959|gb|AAH63246.1| Polymerase (DNA directed), epsilon [Mus musculus]
          Length = 2283

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 272 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 330

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKDPL-- 118
                  + ++P    +   +++   E +    + +N   FD  F+ A            
Sbjct: 331 ----PFCVFNEPDEVHLIQRWFEHIQETKPTIMVTYNGDFFDWPFVEARAAIHGLSMYQE 386

Query: 119 -------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 387 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 446

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 447 MATEQPQTLATYSVSDAVATYYLYMKYV 474


>gi|291390712|ref|XP_002711879.1| PREDICTED: Putative RNA exonuclease NEF-sp-like [Oryctolagus
           cuniculus]
          Length = 850

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 64/204 (31%), Gaps = 32/204 (15%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E   L SK   +  +  V        +      + P+ +       +  GIT + L 
Sbjct: 233 LDCEMC-LTSKGRELTRVSLVAEGGACLMDE----LVKPDNKILDYL-TRFSGITKKIL- 285

Query: 72  DKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             P       +  +        +A  + H+   D+  +                +IDT S
Sbjct: 286 -NPVTTKLKDVQRQLKALL-PPDAVLVGHSLDLDLRALKMI----------HPYVIDT-S 332

Query: 129 IARRKHPSSRNDLNSLCKR-YG--ITISHRSKHGALLDSHLLSDVYIKMMVGG----SQI 181
           +   +    R  L  L K   G  I   ++  H A  D+    ++    +  G    +++
Sbjct: 333 LLYIREQGRRFKLKFLAKAILGKDIQCPNKLGHDATEDARTTLELAQYFLKYGPKKIAEL 392

Query: 182 NFG--FKTNEDRFFKEEKKTVPNI 203
           N        E +   +E +  P +
Sbjct: 393 NLHALVHHQELQAASQEPRNTPGV 416


>gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803]
 gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803]
          Length = 942

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 32/143 (22%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + + FD ETT L++ +  ++ I         +  + F     P  +K   EA KL   
Sbjct: 367 KQKSVCFDTETTSLNTLDAELVGIAFSW-----EAGKGFY-LPFPEEKK---EAQKL--- 414

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                           E  +FF     E I  N K+D+  ++     +           D
Sbjct: 415 --------------IEELRNFFENDKIEKIGQNLKYDIKVLDKYKIDVKGALF------D 454

Query: 126 TLSIARRKHPSSRNDLNSLCKRY 148
           T+      +P  R++++ L + Y
Sbjct: 455 TMIAHYLINPDMRHNMDVLAETY 477


>gi|121595619|ref|YP_987515.1| DNA polymerase I [Acidovorax sp. JS42]
 gi|120607699|gb|ABM43439.1| DNA polymerase I [Acidovorax sp. JS42]
          Length = 922

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 43/161 (26%), Gaps = 36/161 (22%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + R         D ETT LD     I+ +                  + P      P  L
Sbjct: 339 LARLKAAPLAALDTETTSLDELRAEIVGV---------------SFSVEPGAAAYIP--L 381

Query: 61  KLHGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             +G       D P     + +      +  +     +  + K+D           N   
Sbjct: 382 AHNG------PDAPPQLPLAEVLERLRPWLEDPACPKLGQHVKYDRHVF------ANHGI 429

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRY----GITISH 154
                  DT+  +        + L SL +R+    GI+   
Sbjct: 430 QVRGYAHDTMLQSYVLEVHKPHGLASLAERHTGRTGISYED 470


>gi|198284771|ref|YP_002221092.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665686|ref|YP_002427456.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249292|gb|ACH84885.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517899|gb|ACK78485.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 899

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 49/143 (34%), Gaps = 32/143 (22%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETT LD  +  ++ I              +Q    P G                 
Sbjct: 321 VALDTETTSLDPLHADLVGISCAWQAGGD-----YQAVYVPVGH---------------- 359

Query: 70  LKDKPS---FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            +D        ++ +    +  +  A  +A NAK+D         R    P   +R  DT
Sbjct: 360 -RDAGPQLDRQTVLTALRPWLEDPQAAKLAQNAKYDWRV----FWRHGIHPAGLAR--DT 412

Query: 127 LSIARRKHPSSR-NDLNSLCKRY 148
           L  +   + S   +DL++L +RY
Sbjct: 413 LLESYVLNSSHNGHDLDTLAERY 435


>gi|254166623|ref|ZP_04873477.1| hypothetical protein ABOONEI_1715 [Aciduliprofundum boonei T469]
 gi|289596064|ref|YP_003482760.1| DNA-directed DNA polymerase B [Aciduliprofundum boonei T469]
 gi|197624233|gb|EDY36794.1| hypothetical protein ABOONEI_1715 [Aciduliprofundum boonei T469]
 gi|289533851|gb|ADD08198.1| DNA-directed DNA polymerase B [Aciduliprofundum boonei T469]
          Length = 899

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 69/246 (28%), Gaps = 70/246 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I  N    +VFD ETT  D   + +     +   +  K    +  +          + ++
Sbjct: 22  ISPNPSLLLVFDTETT-TDEYQNLLFGSSLIARNN--KVIERYIFYEDNLKESEKEKIIE 78

Query: 62  L---HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-------------- 104
               H I    +  K  F      F+ +  +  A+ I  N  FD+               
Sbjct: 79  FGDSHSIK---VIPKTRFVE--KVFYPYVYQARAKCIGFNLPFDLSRLAIDYTISRKDPR 133

Query: 105 ----------------------------FINAELQRINKDPLDPSRIIDTLSIARRKHPS 136
                                       F+    ++  +           L        +
Sbjct: 134 AFSFTLSKDPRNPRVMIRALDSTKSFIKFLRPLRKKSKRKYTHYEGYFVDLRTFAFALTN 193

Query: 137 SRNDLNSL-----CKRYGITISHRSKHGA---------LLDSHLLSDVYIKMMVGGSQIN 182
            R+ L S      C+ Y    +H  +HGA         L D  +  ++Y+K+M      N
Sbjct: 194 KRHTLESASKEFKCEHYK---THPERHGAINKDYIEYNLNDVQVTFELYLKLMERKEMFN 250

Query: 183 FGFKTN 188
              + N
Sbjct: 251 IDMEEN 256


>gi|195947387|ref|NP_035262.2| DNA polymerase epsilon catalytic subunit A [Mus musculus]
          Length = 2283

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 272 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 330

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKDPL-- 118
                  + ++P    +   +++   E +    + +N   FD  F+ A            
Sbjct: 331 ----PFCVFNEPDEVHLIQRWFEHIQETKPTIMVTYNGDFFDWPFVEARAAIHGLSMYQE 386

Query: 119 -------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 387 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 446

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 447 MATEQPQTLATYSVSDAVATYYLYMKYV 474


>gi|188030133|emb|CAO98019.1| Oligoribonuclease [Erwinia tasmaniensis Et1/99]
          Length = 193

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 60/179 (33%), Gaps = 33/179 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFL-CPNGRKNSP 57
           +  N    I  D+E TGL+ + DRIIEI  +              F V            
Sbjct: 7   MTANANNLIWIDLEMTGLNPEQDRIIEIATLVTDADLNILAEGPVFAVHQSDAQLGLMDE 66

Query: 58  EALKLHGITDEFLKDKPSFSSI---FSEF--WDFFNEQ----NAEWIAHNAKFDVGFINA 108
             ++ H  T+  L ++   S +    +E    +F  +     ++    ++   D  F+  
Sbjct: 67  WNVRTH--TNSGLVERVKASQVDDRAAELATIEFLKQWVPANSSPICGNSIGQDRRFLFK 124

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGALLD 163
            +  +  +     R +D             + L  L +R+   I      +  H AL D
Sbjct: 125 YMPEL--EAYFHYRYLDV------------STLKELARRWKPEILPGFKKQGTHQALDD 169


>gi|133910502|emb|CAM00615.1| oligoribonuclease (3'->5' exoribonuclease) [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 210

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 27/162 (16%)

Query: 17  TGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRK---NSPEALKLH---GITDEF 69
           TGLD   D +IEI A V   D +       + +  +            ++H   G+T+E 
Sbjct: 2   TGLDLGKDALIEIAALVTDADLNILGEGVDIVIHADDEVLAGMPDVVREMHERSGLTEEV 61

Query: 70  LKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            +   + +       D+      + ++A    ++   D GFI  ++  +  D     R++
Sbjct: 62  RRSTVTLAEAEQRILDYIRRHVPDGRSAPLAGNSIATDRGFIARDMPTL--DAHLHYRMV 119

Query: 125 DTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           D  SI    RR  P          + Y         H AL D
Sbjct: 120 DVSSIKELCRRWFP----------RIYYAQPEKGLAHRALAD 151


>gi|91203357|emb|CAJ71010.1| stongly similair to DNA polymerase I [Candidatus Kuenenia
           stuttgartiensis]
          Length = 887

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 47/139 (33%), Gaps = 29/139 (20%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D+ETTG D     I+ +       + +    +   + P   +          +T +  
Sbjct: 316 AIDLETTGTDPLKAHIVGLS----FSWEQKEAYYVPLMAPENTR---------HLTADI- 361

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                   +  E      +++ + I  N K+D+  +      +           D++  +
Sbjct: 362 --------VLPEIRKVLEDESKKKIGQNIKYDLLVLKKHNIGLKGI------YFDSMIAS 407

Query: 131 RRKHPSSR-NDLNSLCKRY 148
              +P+ R ++L+ +   Y
Sbjct: 408 YLLNPAKRNHNLDDIAFEY 426


>gi|325271243|ref|ZP_08137788.1| oligoribonuclease [Pseudomonas sp. TJI-51]
 gi|324103646|gb|EGC00948.1| oligoribonuclease [Pseudomonas sp. TJI-51]
          Length = 180

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 29/176 (16%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-------DYSKTNRTFQVFLCPNGRKN 55
            +N    I  D+E TGLD  +D IIE+  +          +           +     + 
Sbjct: 1   MQNPQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVL---ARM 57

Query: 56  SPEALKLHGIT--DEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
                + HG +   + ++D       + +   +    +  +  +    ++   D  F+  
Sbjct: 58  DEWNTRTHGASGLTQRVRDSKVGMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYR 117

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++ +       +  + TL  +A R  P  R+                + H AL D
Sbjct: 118 HMRNLENYFHYRNLDVSTLKELAARWAPDVRDS-----------FKKGNTHLALDD 162


>gi|226226100|ref|YP_002760206.1| DNA polymerase II [Gemmatimonas aurantiaca T-27]
 gi|226089291|dbj|BAH37736.1| DNA polymerase II [Gemmatimonas aurantiaca T-27]
          Length = 825

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 27/111 (24%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           ++R+  FD+ETTGLD   DRI  I                    P G     EA      
Sbjct: 162 QLRRAQFDLETTGLDPATDRIFLIA----------------LRSPEGAVGLLEAKG---- 201

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAK-FDVGFINAELQRIN 114
            D+   +     S+   F       + + +  HN   FD+ F++   +++ 
Sbjct: 202 -DDDAAEA----SLLRRFAAAIQRIDPDVLENHNLHGFDLPFLHRRAKQLG 247


>gi|5565875|gb|AAD45244.1|AF123502_1 DNA polymerase epsilon catalytic subunit [Mus musculus]
          Length = 2284

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 272 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 330

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKDPL-- 118
                  + ++P    +   +++   E +    + +N   FD  F+ A            
Sbjct: 331 ----PFCVFNEPDEVHLIQRWFEHIQETKPTIMVTYNGDFFDWPFVEARAAIHGLSMYQE 386

Query: 119 -------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 387 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 446

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 447 MATEQPQTLATYSVSDAVATYYLYMKYV 474


>gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
 gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
          Length = 939

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 32/143 (22%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K   I FD ETTG D+    ++ +                  + P      P        
Sbjct: 364 KQESISFDTETTGTDANLAELVGL---------------SFSIKPGEGYYIPVP------ 402

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                 +  +   I  EF      +N   I  N K+D+  +      +        R+ D
Sbjct: 403 -----AEMEAAQQIVEEFRPVLENENIVKIGQNIKYDMLILKWYGISVKG------RLFD 451

Query: 126 TLSIARRKHPSSRNDLNSLCKRY 148
           T+       P +R++++ L + Y
Sbjct: 452 TMLAHYLIDPDTRHNMDVLSENY 474


>gi|33865236|ref|NP_896795.1| DNA polymerase I [Synechococcus sp. WH 8102]
 gi|33638920|emb|CAE07217.1| DNA polymerase I [Synechococcus sp. WH 8102]
          Length = 981

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 22/147 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +    +  D ETT L+     ++ IG     +          ++ P G   S ++ 
Sbjct: 378 MTCTDTGSPVALDTETTDLNPFKAELVGIGVCWGEELDAL-----AYI-PLGHNGSADSQ 431

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +          +    ++ +    +   ++      NAKFD   +      ++      
Sbjct: 432 PV----------QLPLETVVTALAPWLGSEDHPKALQNAKFDRLILMRHGLALDGV---- 477

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKR 147
             +IDTL     +  ++++ L  + +R
Sbjct: 478 --VIDTLLADYLRDAAAKHGLELMAER 502


>gi|17367197|sp|Q9WVF7|DPOE1_MOUSE RecName: Full=DNA polymerase epsilon catalytic subunit A; AltName:
           Full=DNA polymerase II subunit A
 gi|5669844|gb|AAD46482.1| DNA polymerase epsilon catalytic subunit [Mus musculus]
          Length = 2283

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 272 LAFDIETTKLPLTFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 330

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKDPL-- 118
                  + ++P    +   +++   E +    + +N   FD  F+ A            
Sbjct: 331 ----PFCVFNEPDEVHLIQRWFEHIQETKPTIMVTYNGDFFDWPFVEARAAIHGLSMYQE 386

Query: 119 -------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 387 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 446

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 447 MATEQPQTLATYSVSDAVATYYLYMKYV 474


>gi|301156619|emb|CBW16090.1| oligoribonuclease [Haemophilus parainfluenzae T3T1]
          Length = 182

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 57/181 (31%), Gaps = 37/181 (20%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNGR 53
           ++ +K   I  D+E TGLD + +RIIEI  +                       L     
Sbjct: 1   MQLDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVIAVHQSDELLN---- 56

Query: 54  KNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFI 106
           K S   +K H   G+ +     K +  +   +  DF         +    ++   D  F+
Sbjct: 57  KMSEWCVKTHTANGLVERVKASKITERAAELQTLDFLKRWVPKGASPICGNSIAQDKRFL 116

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGALL 162
              +  +        R +D             + L  L  R+   I       + H AL 
Sbjct: 117 YKYMPDL--ADYFHYRHVDV------------STLKELASRWKPEILDGFKKGNTHLALD 162

Query: 163 D 163
           D
Sbjct: 163 D 163


>gi|253991561|ref|YP_003042917.1| oligoribonuclease [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211638439|emb|CAR67061.1| oligoribonuclease (ec 3.1.-.-) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783011|emb|CAQ86176.1| oligoribonuclease [Photorhabdus asymbiotica]
          Length = 181

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 57/197 (28%), Gaps = 56/197 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + K++   I  D+E TGLD + DRIIEI  +                           + 
Sbjct: 1   MSKSEHNLIWIDLEMTGLDPERDRIIEIATIVTDANLNILAE-------------GPVIA 47

Query: 62  LHGITDEFLK------------------------DKPSFSSIFSEFWD-FFNEQNAEWIA 96
           +H  +DE L                         D         EF + +     +    
Sbjct: 48  IHQ-SDEQLALMDEWNVRTHTGSGLVERVKASKIDAHGAEKATIEFLEKWVPVGVSPICG 106

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHR 155
           ++   D  F+   +  +          + TL  +ARR  P        L          +
Sbjct: 107 NSVGQDRRFLFRYMPELEAYFHYRYLDVSTLKELARRWKPEI------LA-----GFKKQ 155

Query: 156 SKHGALLD-----SHLL 167
           + H AL D     + L 
Sbjct: 156 NTHQALDDIRESVAELT 172


>gi|33240684|ref|NP_875626.1| DNA polymerase I [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238212|gb|AAQ00279.1| DNA polymerase I 3'-5' exonuclease and polymerase domains
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 985

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 19/147 (12%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            ++ +  D ETT L+     ++ +G     +          ++ P G  +  E      +
Sbjct: 383 PLQPVAIDTETTSLNPFKAELVGLGFCWGENLDDI-----AYI-PLGHNSQGE------L 430

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            D+ ++ +    ++      + +      +  NAK+D           N  PL+   ++D
Sbjct: 431 KDQSIRQQLPIQNVIQSLTPWLSSSYHPKVLQNAKYDRLIFLH-----NGIPLE-GVVMD 484

Query: 126 TLSIARRKHPSSRNDLNSLCKR-YGIT 151
           TL      + ++++ L+ + KR YG T
Sbjct: 485 TLLADYLSNSTNKHSLDEIAKREYGFT 511


>gi|238881963|gb|EEQ45601.1| oligoribonuclease, mitochondrial precursor [Candida albicans WO-1]
          Length = 237

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 61/173 (35%), Gaps = 24/173 (13%)

Query: 6   KMRKIVFDIETTGLDSKN-DRIIEIGA-VELLDYSKTNRT--FQVFLCPNGR--KNSPEA 59
           K   +  D E TGLD    D IIEI   +   D    +          P  R  K +   
Sbjct: 26  KKPLVWVDCEMTGLDVFGDDNIIEICCIITNEDLDIVDENGYESTIYYPKSRLDKMNEWC 85

Query: 60  LKLH---GITDEFLKDKP-SFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAEL 110
           ++ H   G+TD+ L +     S +  E  ++  +     +      ++   D  F+  E 
Sbjct: 86  IETHGKSGLTDKILANPDRKLSVVEDELLEYIKKYVPEVRTGLLAGNSVHMDRFFMMKEF 145

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++  D L   R +D  SI        R++   L K +         H A  D
Sbjct: 146 PKV-IDHLH-YRNVDVSSI---MEFGYRHN-PKLMKMF---PKKTGAHTAKSD 189


>gi|113955418|ref|YP_730141.1| DNA polymerase I [Synechococcus sp. CC9311]
 gi|113882769|gb|ABI47727.1| DNA polymerase I [Synechococcus sp. CC9311]
          Length = 994

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 54/154 (35%), Gaps = 25/154 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  ++ +  +  D ETT L+    +++ IG         ++    + +   G        
Sbjct: 388 MNCRDPLAPVALDTETTDLNPFRAQLVGIGMCW---GPGSDDLAYIPVSHQGDPIP---- 440

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                      D+    ++      +           NAK+D   +     R        
Sbjct: 441 -----------DQLPLETVLQALAPWLASGEHPKALQNAKYDRLILL----RHGLPLA-- 483

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKR-YGITIS 153
             ++DTL     +  ++++ L+++ +R YGI+ +
Sbjct: 484 GVVMDTLLADYLRDAAAKHGLDAMAQRDYGISPT 517


>gi|104783881|ref|YP_610379.1| oligoribonuclease [Pseudomonas entomophila L48]
 gi|122401621|sp|Q1I440|ORN_PSEE4 RecName: Full=Oligoribonuclease
 gi|95112868|emb|CAK17596.1| oligoribonuclease (3'->5' exoribonuclease) [Pseudomonas entomophila
           L48]
          Length = 180

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 29/176 (16%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-------DYSKTNRTFQVFLCPNGRKN 55
            +N    I  D+E TGLD  +D IIE+  +          +           +     + 
Sbjct: 1   MQNPQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVL---ARM 57

Query: 56  SPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINA 108
                + H   G+T    + K S +   ++   F  +      +    ++   D  F+  
Sbjct: 58  DEWNTRTHGNSGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYR 117

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++ +       +  + TL  +A R  P  R+                S H AL D
Sbjct: 118 HMRGLENYFHYRNLDVSTLKELAARWAPDVRDS-----------FKKGSTHLALDD 162


>gi|91213714|ref|YP_543700.1| oligoribonuclease [Escherichia coli UTI89]
 gi|237703830|ref|ZP_04534311.1| oligoribonuclease [Escherichia sp. 3_2_53FAA]
 gi|254037177|ref|ZP_04871254.1| oligoribonuclease [Escherichia sp. 1_1_43]
 gi|332280947|ref|ZP_08393360.1| oligoribonuclease [Shigella sp. D9]
 gi|26111489|gb|AAN83671.1|AE016771_182 Oligoribonuclease [Escherichia coli CFT073]
 gi|91075288|gb|ABE10169.1| oligoribonuclease [Escherichia coli UTI89]
 gi|226840283|gb|EEH72285.1| oligoribonuclease [Escherichia sp. 1_1_43]
 gi|226901742|gb|EEH88001.1| oligoribonuclease [Escherichia sp. 3_2_53FAA]
 gi|332103299|gb|EGJ06645.1| oligoribonuclease [Shigella sp. D9]
          Length = 220

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 40  MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 84

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 85  IAVHQ-SDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 143

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 144 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 192

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 193 KQGTHQAMDD 202


>gi|94676725|ref|YP_589014.1| oligoribonuclease [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|172046199|sp|Q1LSQ0|ORN_BAUCH RecName: Full=Oligoribonuclease
 gi|94219875|gb|ABF14034.1| oligoribonuclease [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 184

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 23/174 (13%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK----NS 56
           MI  + +  I  D+E TGL+ + DRI+EI  +             V       +     +
Sbjct: 1   MISLHNL--IWIDLEMTGLNPEQDRILEIATLITDANLNIIAEGPVLAIHQSEEQLKLMN 58

Query: 57  PEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAE 109
              +++H   G+ ++  K   +  +  ++   F  E      +    ++   D  F+   
Sbjct: 59  TWNIRIHTANGLIEKVRKSTLNEETAAAQTIAFLQEWVPAGKSPICGNSISQDRRFLYRY 118

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  +          + TL    R+               GI    ++ H AL D
Sbjct: 119 MPILESYFHYRCLDVSTLQELARRWKPK--------IMAGIK--KKNSHKALDD 162


>gi|114564478|ref|YP_751992.1| oligoribonuclease [Shewanella frigidimarina NCIMB 400]
 gi|122298754|sp|Q07XW1|ORN_SHEFN RecName: Full=Oligoribonuclease
 gi|114335771|gb|ABI73153.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
           frigidimarina NCIMB 400]
          Length = 181

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 35/170 (20%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVF-----LCPNGRKNSPEAL 60
            D+E TGL+   DR+IEI  +        +        +Q       +    +K+  E+ 
Sbjct: 11  VDLEMTGLEPDVDRVIEIATLVTDQELNIIAQGPVLAIYQTDEVLAGMDDWNQKHHGES- 69

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRINKD 116
              G+ D     K S     ++  DF  +      +    ++   D  F+N  +  +  +
Sbjct: 70  ---GLVDRVRASKCSEQDAIAQTIDFLAQYVPKGASPMCGNSIGQDRRFLNKYM--LELE 124

Query: 117 PLDPSRIIDTLSIA---RRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                R ID  ++    RR  P + N             S ++ H AL D
Sbjct: 125 EFFHYRNIDVSTVKELVRRWSPETMNG-----------FSKKNTHQALED 163


>gi|333011146|gb|EGK30560.1| exonuclease family protein [Shigella flexneri K-272]
 gi|333012659|gb|EGK32039.1| exonuclease family protein [Shigella flexneri K-227]
          Length = 181

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDTNLNILAEGPT 45

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 46  IAVHQ-SDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 105 CGNSIGQDRRFLFKYMPELEVYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 153

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 154 KQGTHQAMDD 163


>gi|169752556|gb|ACA70074.1| Exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis YPIII]
 gi|186696803|gb|ACC87432.1| Exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis PB1/+]
          Length = 227

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 61/184 (33%), Gaps = 43/184 (23%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N+   I  D+E TGLD + DRIIEI  +       T+    +            A +
Sbjct: 47  MAENQNNLIWIDLEMTGLDPERDRIIEIATL------VTDANLNILAEGPVLAVHQSAEQ 100

Query: 62  LHGITD-------------EFLK-----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
           L G+ D             E +K     D+ +          +     +    ++   D 
Sbjct: 101 L-GLMDEWNVRTHTGSGLVERVKTSPFNDRDAELQTIEFLKQWVPAGVSPICGNSVGQDR 159

Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHG 159
            F+   +  +  +     R +D             + L  L +R+   I      ++ H 
Sbjct: 160 RFLFRYMPEL--EAYFHYRYVDV------------STLKELARRWKPEILAGFKKQNTHQ 205

Query: 160 ALLD 163
           AL D
Sbjct: 206 ALDD 209


>gi|149910187|ref|ZP_01898833.1| Oligoribonuclease [Moritella sp. PE36]
 gi|149806773|gb|EDM66737.1| Oligoribonuclease [Moritella sp. PE36]
          Length = 188

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 54/180 (30%), Gaps = 35/180 (19%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            + N+   +  D+E TGLD +   IIEI  +       T+    +           +  +
Sbjct: 8   TQFNENNLVWIDLEMTGLDPEKCLIIEIATI------VTDSELNILAEGPVLAIHQDKAE 61

Query: 62  L--------HGITD---------EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
           L           T+           + +K +     +    +     +    ++   D  
Sbjct: 62  LDKMDEWCTTHHTNSGLVKRVLASEVTEKEAVEQTLAFLHKWVPAGKSPLCGNSIGQDRR 121

Query: 105 FINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   +  +N      +  + T+  + RR  P   +               +  H AL D
Sbjct: 122 FLVKYMTELNDYFHYRNVDVSTIKELGRRWCPEVVSS-----------FHKQGLHLALDD 170


>gi|170090998|ref|XP_001876721.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648214|gb|EDR12457.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 525

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 56/170 (32%), Gaps = 27/170 (15%)

Query: 10  IVFDIE---TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGI 65
           +  D E   TTG        + +  V  +D S   + F   +    G +      +  GI
Sbjct: 357 VAMDCEMIYTTGG-------MRVARVSAVDGSGV-QVFDQLVRMDEGVQVIDYNTRFSGI 408

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
           T+E  K      +   E  +   + +   I H    D+  +           +   + +D
Sbjct: 409 TEESYKGAILSLAKIRESLNSLIDTDTILIGHALDNDLKTLR----------IIHHKCVD 458

Query: 126 T-LSIARRKHPSSRNDLNSL-CKRYGITISHRSK---HGALLDSHLLSDV 170
           T L    R  P  R  L  L  ++ G  I        H +L D+    D+
Sbjct: 459 TALLFPHRAGPPYRRSLKDLVREKLGKMIQTGDASVGHSSLEDASSTLDL 508


>gi|320539682|ref|ZP_08039346.1| putative oligoribonuclease [Serratia symbiotica str. Tucson]
 gi|320030294|gb|EFW12309.1| putative oligoribonuclease [Serratia symbiotica str. Tucson]
          Length = 181

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 60/189 (31%), Gaps = 53/189 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MTGNESNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPV 45

Query: 60  LKLH------GITDE------------------FLKDKPSFSSIFSEFWDFFNEQNAEWI 95
           + +H      G+ D+                   L D+ +  +  +    +     +   
Sbjct: 46  IAVHQSDEQLGLMDDWNVRTHMGSGLVARVKASHLDDRAAEMATIAFLRQWVPAGKSPIC 105

Query: 96  AHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISH 154
            ++   D  F+   +  +          + TL  +ARR  P   N     CK+       
Sbjct: 106 GNSVGQDRRFLFRYMPELEAYFHYRYLDVSTLKELARRWKPEILNG----CKK------- 154

Query: 155 RSKHGALLD 163
           +S H A+ D
Sbjct: 155 QSTHQAMDD 163


>gi|312922377|ref|NP_001100622.2| DNA polymerase epsilon catalytic subunit A [Rattus norvegicus]
          Length = 2283

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 272 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 330

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKDPL-- 118
                  + ++P    +   +++   E +    + +N   FD  F+ A            
Sbjct: 331 ----PFCVFNEPDEVHLIQRWFEHIQETKPTIMVTYNGDFFDWPFVEARAAIHGLSMYQE 386

Query: 119 -------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 387 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 446

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 447 MATEQPQTLATYSVSDAVATYYLYMKYV 474


>gi|327537894|gb|EGF24594.1| DNA polymerase I [Rhodopirellula baltica WH47]
          Length = 975

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 44/149 (29%), Gaps = 33/149 (22%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           +   K   +  D ETT   ++   +  I I            R       P+G     E 
Sbjct: 389 VELAKQTVLAIDTETTSTHARGCDLVGISIAWQPGEAAYIPVR------APDGDPAINEL 442

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +                  +     D       E + HN KFDV  + +   ++      
Sbjct: 443 I------------------VIETLRDVLESSAIEKVGHNLKFDVIVLRSAGVQLGGIT-- 482

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKR 147
               +DT+      +   RN  L+ L +R
Sbjct: 483 ----MDTMVADYLLNSGGRNHGLDDLAQR 507


>gi|297693518|ref|XP_002824066.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic
           subunit A-like [Pongo abelii]
          Length = 2056

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 272 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 330

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKD---- 116
                  + ++P  + +   +++   E +    + +N   FD  F+ A            
Sbjct: 331 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMQQE 386

Query: 117 -----------PLDPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 387 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 446

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 447 MATEQPQTLATYSVSDAVATYYLYMKYV 474


>gi|297263916|ref|XP_001086545.2| PREDICTED: DNA polymerase epsilon catalytic subunit A [Macaca
           mulatta]
          Length = 1471

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 272 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 330

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKD---- 116
                  + ++P  + +   +++   E +    + +N   FD  F+ A            
Sbjct: 331 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMQQE 386

Query: 117 -----------PLDPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 387 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 446

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 447 MATEQPQTLATYSVSDAVATYYLYMKYV 474


>gi|294634445|ref|ZP_06712981.1| oligoribonuclease [Edwardsiella tarda ATCC 23685]
 gi|291092155|gb|EFE24716.1| oligoribonuclease [Edwardsiella tarda ATCC 23685]
          Length = 181

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 53/190 (27%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  ++ R I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSASETRLIWIDLEMTGLDPERDRIIEIA---------------TLVTDAELNVLAEGPV 45

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H   D  L                             +  +       +     +  
Sbjct: 46  IAVHQ-DDAQLALMDEWNVRTHTASGLVQRVKESRYDTAAAEQATLEFLRQWVPAGVSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  + +        + TL  +ARR  P        L         
Sbjct: 105 CGNSVGQDRRFLFRYMPELERYFHYRYLDVSTLKELARRWKPEI------LA-----GFH 153

Query: 154 HRSKHGALLD 163
            ++ H AL D
Sbjct: 154 KQNTHQALDD 163


>gi|256848239|ref|ZP_05553682.1| conserved hypothetical protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714837|gb|EEU29815.1| conserved hypothetical protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 170

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 16  TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---SPEALKLHGITDEFLKD 72
           TTGLD ++D II +   +L         F     P   KN   + +  ++H    + + +
Sbjct: 14  TTGLDWQSDEIIHLTITDLFGNV----AFSHLFNPAKIKNWDPTQQGFEIH---PQDVAN 66

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAH-NAKFDVGFINAELQRI 113
           +P  +   S     F++ +   I   N+ FD  F+     ++
Sbjct: 67  QPPLNDYLSTIQKLFDQADT-LIGFGNSTFDDWFLQQAGIKL 107


>gi|260219588|emb|CBA26433.1| hypothetical protein Csp_E35210 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 377

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 46/99 (46%), Gaps = 8/99 (8%)

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLD 163
           F+  EL R+  D    ++ + T+ ++RR +P  + + L+++ +R+G+    +++H A+ D
Sbjct: 1   FVANELARL--DVTLKAKTLCTVRLSRRLYPQHKGHGLDAILQRHGLQT--QARHRAMGD 56

Query: 164 SHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPN 202
             +   V   + V   ++       E     +    +P 
Sbjct: 57  VEV---VLAWLDVAARELGAEALQTEALGLLQGSAALPP 92


>gi|242308893|ref|ZP_04808048.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489]
 gi|239524557|gb|EEQ64423.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489]
          Length = 895

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 28/147 (19%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETT L+ ++ +I+                F   +        P A    G     ++
Sbjct: 334 FDTETTSLEVRSAKIVG---------------FSFSVNGVDSYYVPIAHNYLG-----VE 373

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           ++ S+     EF ++        I HN K+D+  +      + +D    S+I D++ +A 
Sbjct: 374 EQVSY-ECAKEFIEYIFGC-KYVIGHNLKYDLEILKTNFDFVLQDF---SKIRDSMLLAW 428

Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKH 158
                +  +L+ L K+Y    +H   H
Sbjct: 429 LLQSDALCNLDFLMKKY---FNHEMIH 452


>gi|238486668|ref|XP_002374572.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220699451|gb|EED55790.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 537

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 90  QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII---DTLSIAR--RKHPSSRNDLNSL 144
           ++   + H    DV ++     R+ + P   +  I   DT    R  R  P++R  L  +
Sbjct: 445 RHLVLVGHAVSSDVQYLRQIGVRMERKPEGTAGFIGVVDTAEFFRIIRGEPTTR-KLADI 503

Query: 145 CKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            + + +T  H   H A  D+    +V + MM+
Sbjct: 504 LQEFNMTGWH--LHNAGNDARYTMEVMLCMML 533


>gi|308805022|ref|XP_003079823.1| exonuclease family protein (ISS) [Ostreococcus tauri]
 gi|116058280|emb|CAL53469.1| exonuclease family protein (ISS) [Ostreococcus tauri]
          Length = 404

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 51/149 (34%), Gaps = 18/149 (12%)

Query: 32  VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPS-FSSIFSEFWDFFNEQ 90
           V   D       +   + P     +       GIT E ++   +    +  E  +    +
Sbjct: 262 VVKEDGDVV---YDKLVKPPTEITNYNTAHS-GITAEQMEGVTTTLQDVQRELLEMIPCE 317

Query: 91  NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS-IARRKHPSSRNDLNSLCKRYG 149
               I H+ + D+  +           +  + +IDT +    ++    RN L  L ++Y 
Sbjct: 318 -TILIGHSLENDLHRLK----------IIHANVIDTCALYPHKRGAPYRNALRYLTEQYL 366

Query: 150 ITISHRSKHGALLDSHLLSDV-YIKMMVG 177
                   H ++ D+    ++  +K + G
Sbjct: 367 GRKIQEGSHDSVADAQATMELALLKFING 395


>gi|83767757|dbj|BAE57896.1| unnamed protein product [Aspergillus oryzae]
          Length = 537

 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 90  QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII---DTLSIAR--RKHPSSRNDLNSL 144
           ++   + H    DV ++     R+ + P   +  I   DT    R  R  P++R  L  +
Sbjct: 445 RHLVLVGHAVSSDVQYLRQIGVRMERKPEGTAGFIGVVDTAEFFRIIRGEPTTR-KLADI 503

Query: 145 CKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            + + +T  H   H A  D+    +V + MM+
Sbjct: 504 LQEFNMTGWH--LHNAGNDARYTMEVMLCMML 533


>gi|311900791|dbj|BAJ33199.1| hypothetical protein KSE_74440 [Kitasatospora setae KM-6054]
          Length = 192

 Score = 44.1 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 57/196 (29%), Gaps = 58/196 (29%)

Query: 1   MIRKNKMRKI-VFDIETT---GLDSKN--DRIIEIG--AVELLDYSKTNRTFQVFLCPNG 52
           MIR  +   + V D+E T   G         IIEIG   V+L   ++  R  +V + P  
Sbjct: 1   MIRGMEQHLLNVVDVEATCWEGQPPPGQVSEIIEIGLTVVDLASLARVGRH-RVLVRPRR 59

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
              S    +L G+T   +     F                             + A   R
Sbjct: 60  SSVSGFCTELTGLTAREVAGGLPFDEA------------------------CRLLAAEHR 95

Query: 113 INKDPLDPSRIIDTLSIARRK------HPSSRNDLNS------------------LCKRY 148
             + P       D L   R+       +P  R   N+                    +  
Sbjct: 96  AGERPWASWGDYDRLQFTRQCRAAGTAYPFGRRHTNAKAVFTEARGLPKRPGMARALELA 155

Query: 149 GITISHRSKHGALLDS 164
           G+ +  R   GA  D+
Sbjct: 156 GLPLEGRHHSGA-DDA 170


>gi|329744594|ref|NP_001178358.1| DNA polymerase epsilon catalytic subunit A [Bos taurus]
 gi|297484670|ref|XP_002694496.1| PREDICTED: polymerase (DNA directed), epsilon [Bos taurus]
 gi|296478658|gb|DAA20773.1| polymerase (DNA directed), epsilon [Bos taurus]
          Length = 2289

 Score = 44.1 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 272 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 330

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKDPL-- 118
                  + ++P    +   +++   E +    + +N   FD  F+ A            
Sbjct: 331 ----PFCVFNEPDEVHLIQRWFEHIQEAKPTIMVTYNGDFFDWPFVEARAAVHGLSMYQE 386

Query: 119 -------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 387 IGFQKDSQGEYKSPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 446

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 447 MATEQPQTLATYSVSDAVATYYLYMKYV 474


>gi|254161639|ref|YP_003044747.1| hypothetical protein ECB_01545 [Escherichia coli B str. REL606]
 gi|253973540|gb|ACT39211.1| predicted protein [Escherichia coli B str. REL606]
          Length = 823

 Score = 44.1 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 35/190 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALKLHGITDE 68
            D+ET G +  +  II IGA+            F   +     G     + +K       
Sbjct: 645 IDLETMGKNP-DAPIISIGAIFFDPQTGDIGPEFSKTIDLETAGGVIDRDTIK------W 697

Query: 69  FLK-----------DKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINAELQRI 113
           +LK           D+        +  +F +E + E+      + A FD   +    +R 
Sbjct: 698 WLKQSREAQSAIMTDEIPLDDALLQLREFIDENSGEFFVQVWGNGANFDNTILRRSYERQ 757

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD---- 169
                 P R  +   +          D ++   R  I      +H AL D+   +     
Sbjct: 758 GIP--CPWRYYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDARYQAKYVSV 811

Query: 170 VYIKMMVGGS 179
           ++ K++   +
Sbjct: 812 IWQKLIPSQA 821


>gi|149377531|ref|ZP_01895272.1| oligoribonuclease [Marinobacter algicola DG893]
 gi|149358223|gb|EDM46704.1| oligoribonuclease [Marinobacter algicola DG893]
          Length = 180

 Score = 44.1 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 31/178 (17%)

Query: 1   MIRKNKMRKIV-FDIETTGLDSKNDRIIEIGAV------ELLDYSKTNRTFQVFLCPNGR 53
           M   N    +V  D+E TGLD + +RIIEI  +        ++        Q        
Sbjct: 1   MPEAN---YLVWIDLEMTGLDPEKERIIEIATIVTDSDLNTIEEGPVIAVHQS--DKLLS 55

Query: 54  KNSPEALKLH---GITDEFLKDK-----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
           +      + H   G+T + +KD       +          +     +    ++   D  F
Sbjct: 56  EMDEWCTRTHGESGLT-QRVKDSKYGEIDAEQKTLEFLQRYLEPGQSPLCGNSIGQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   +  +  +     R +D  +I         + L+ + K+          H AL D
Sbjct: 115 LVKYMPEL--EAFFHYRNLDVSTIKELARRWRPDVLDGVKKK--------GSHLALDD 162


>gi|294658997|ref|XP_461325.2| DEHA2F22594p [Debaryomyces hansenii CBS767]
 gi|202953536|emb|CAG89730.2| DEHA2F22594p [Debaryomyces hansenii]
          Length = 295

 Score = 44.1 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 22/165 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNS---PEALKLH--- 63
            D E TGL+   D IIEI  +      +      F+  +              +  H   
Sbjct: 93  IDCEMTGLNVFQDHIIEICCIITDGNLEIIDEKGFESTVYQPKEVLDGMNEWCVNQHGKS 152

Query: 64  GITDEFLKD-KPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRINKDPL 118
           G+T + L++ +   S I  E  ++  +           ++   D  F+  E  +I  D L
Sbjct: 153 GLTAKILENPQCELSKIEDELLEYIKQYVQPNKGIMAGNSIHMDKFFMMREFPKI-IDYL 211

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              R+ID  SI        R++   L K +      +  H A  D
Sbjct: 212 H-YRLIDVSSI---MEVGYRHN-PELMKLF---PKKQGNHTARSD 248


>gi|152973034|ref|YP_001338180.1| oligoribonuclease [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|166216264|sp|A6TH79|ORN_KLEP7 RecName: Full=Oligoribonuclease
 gi|150957883|gb|ABR79913.1| oligoribonuclease [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 181

 Score = 44.1 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFL-CPNGRKNSP 57
           +  N+   I  D+E TGLD + DRIIEI  +             T  V            
Sbjct: 1   MSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDAQLALMDE 60

Query: 58  EALKLH---GITD----EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
             ++ H   G+ D      + +  +  +       +     +    ++   D  F+   +
Sbjct: 61  WNVRTHTGSGLVDRVKASTVSEHDAELATIDFLKQWVPAGKSPICGNSIGQDRRFLFKYM 120

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++          + TL  +ARR  P     L+            +  H A+ D
Sbjct: 121 PQLEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFKKQGTHQAMDD 163


>gi|145600855|ref|YP_001164931.1| oligoribonuclease [Yersinia pestis Pestoides F]
 gi|108777113|gb|ABG19632.1| oligoribonuclease [Yersinia pestis Nepal516]
 gi|108781821|gb|ABG15879.1| oligoribonuclease [Yersinia pestis Antiqua]
 gi|145212551|gb|ABP41958.1| oligoribonuclease [Yersinia pestis Pestoides F]
          Length = 227

 Score = 44.1 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 60/184 (32%), Gaps = 43/184 (23%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N+   I  D+E TGLD + DRIIEI  +       T+    +            A +
Sbjct: 47  MAENQNNLIWIDLEMTGLDPERDRIIEIATL------VTDANLNILAEGPVLAVHQSAEQ 100

Query: 62  LHGITD-------------EFLKDKP-----SFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
           L G+ D             E +K  P     +          +     +    ++   D 
Sbjct: 101 L-GLMDEWNVRTHTGSGLVERVKASPFNDRDAELQTIEFLKQWVPAGVSPICGNSVGQDR 159

Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHG 159
            F+   +  +  +     R +D             + L  L +R+   I      ++ H 
Sbjct: 160 RFLFRYMPEL--EAYFHYRYVDV------------STLKELARRWKPEILAGFKKQNTHQ 205

Query: 160 ALLD 163
           AL D
Sbjct: 206 ALDD 209


>gi|51598799|ref|YP_072987.1| DNA polymerase I [Borrelia garinii PBi]
 gi|51573370|gb|AAU07395.1| DNA polymerase I [Borrelia garinii PBi]
          Length = 909

 Score = 44.1 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 49/142 (34%), Gaps = 34/142 (23%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D ET+ LD+   ++I I             +F+ F    G     E          
Sbjct: 342 YISIDTETSSLDTYTAKLIGISI-----------SFKEF---EGYYIPIET--------- 378

Query: 69  FLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             K K       I  +F + F   N + I  N KFD   +          P+ P    DT
Sbjct: 379 --KGKIYIEKHYIIQKFNNLFKS-NPKIIGQNYKFDYKILKNN----GFSPIPP--YFDT 429

Query: 127 LSIARRKHPSSRNDLNSLCKRY 148
           +  A     +S+  L+ L ++Y
Sbjct: 430 MIAAYLIDTNSKVSLDFLAEKY 451


>gi|163842028|ref|YP_001626433.1| oligoribonuclease [Renibacterium salmoninarum ATCC 33209]
 gi|162955504|gb|ABY25019.1| oligoribonuclease [Renibacterium salmoninarum ATCC 33209]
          Length = 215

 Score = 44.1 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 66/169 (39%), Gaps = 24/169 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG---RKNSPEALKLH 63
           R +  D E TGLD + D +IE+   +   + +  +    V + P+     + +     +H
Sbjct: 7   RIVWIDCEMTGLDLEADALIEVAVLITDSELNILDDGVDVVIKPDAAALAQMNDFVRNMH 66

Query: 64  ---GITDEFLKDKPSFSS----IFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINK 115
               + DE L +  + ++    + +    F  +   A+   ++   D  F+  ++  + +
Sbjct: 67  TTSKLLDE-LPNGLTMAAAQDIVLTYIKKFLPDPGKAQLGGNSIGTDKMFLARDMPELIE 125

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                   + T+  ++RR +P          + Y  + +    H AL D
Sbjct: 126 HLHYRVIDVSTIKELSRRWYP----------RAYFQSPAKHGGHRALGD 164


>gi|255728745|ref|XP_002549298.1| hypothetical protein CTRG_03595 [Candida tropicalis MYA-3404]
 gi|240133614|gb|EER33170.1| hypothetical protein CTRG_03595 [Candida tropicalis MYA-3404]
          Length = 393

 Score = 44.1 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 63/187 (33%), Gaps = 32/187 (17%)

Query: 3   RKNKMRKIVFDIE---TT-GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           + +K + I  D E   TT G         E+  + ++DY        +F+ P G      
Sbjct: 224 KPSKSKVIGLDCEMVFTTKGF--------ELARITVIDYFTRKEVSDIFVKPFGEVVDFN 275

Query: 59  A--LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
                +H +   FL     +    ++  +  + Q    + H    D   I A  + I   
Sbjct: 276 TRYSGIHELDGNFL----PWDQAMAKLGESMDSQTIVLV-HGGDNDFHAIRAIHENI--- 327

Query: 117 PLDPSRIIDTLSIARRKH---PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                  IDT  +   KH   P  R  L  L  +Y      + +H +  D+   +D+   
Sbjct: 328 -------IDTSILFPTKHETGPWRRWSLKDLTFKYLSKEIQKGEHDSTEDALATADIVRY 380

Query: 174 MMVGGSQ 180
            +    Q
Sbjct: 381 FVRKELQ 387


>gi|209921653|ref|YP_002295737.1| oligoribonuclease [Escherichia coli SE11]
 gi|209914912|dbj|BAG79986.1| oligoribonuclease [Escherichia coli SE11]
 gi|320200705|gb|EFW75291.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli EC4100B]
          Length = 181

 Score = 44.1 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 45

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 46  IAVHQ-SDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P   N             +
Sbjct: 105 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILNG-----------FT 153

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 154 KQGTHQAMDD 163


>gi|68466641|ref|XP_722516.1| hypothetical protein CaO19.1466 [Candida albicans SC5314]
 gi|68466924|ref|XP_722377.1| hypothetical protein CaO19.9041 [Candida albicans SC5314]
 gi|46444347|gb|EAL03622.1| hypothetical protein CaO19.9041 [Candida albicans SC5314]
 gi|46444495|gb|EAL03769.1| hypothetical protein CaO19.1466 [Candida albicans SC5314]
          Length = 255

 Score = 44.1 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 61/173 (35%), Gaps = 24/173 (13%)

Query: 6   KMRKIVFDIETTGLDSKN-DRIIEIGA-VELLDYSKTNRT--FQVFLCPNGR--KNSPEA 59
           K   +  D E TGLD    D IIEI   +   D    +          P  R  K +   
Sbjct: 44  KKPLVWVDCEMTGLDVFGDDNIIEICCIITNEDLDIVDENGYESTIYYPKSRLDKMNEWC 103

Query: 60  LKLH---GITDEFLKDKP-SFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAEL 110
           ++ H   G+TD+ L +     S +  E  ++  +     +      ++   D  F+  E 
Sbjct: 104 IETHGKSGLTDKILANPDRKLSVVEDELLEYIKKYVPEVRTGLLAGNSVYMDRFFMMKEF 163

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++  D L   R +D  SI        R++   L K +         H A  D
Sbjct: 164 PKV-IDHLH-YRNVDVSSI---MEFGYRHN-PKLMKMF---PKKTGAHTAKSD 207


>gi|46190895|ref|ZP_00206604.1| COG1949: Oligoribonuclease (3'->5' exoribonuclease)
           [Bifidobacterium longum DJO10A]
 gi|189440035|ref|YP_001955116.1| Oligoribonuclease [Bifidobacterium longum DJO10A]
 gi|189428470|gb|ACD98618.1| Oligoribonuclease [Bifidobacterium longum DJO10A]
          Length = 214

 Score = 44.1 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 23/136 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRK---NSPE---ALKLH- 63
            D ETTGLD     ++E+G  V  L       +  + + P+  +   N PE   A ++H 
Sbjct: 29  IDTETTGLDPNQCELLEVGMQVTDLKAETRGGSLHLIVHPDNVRNWANHPEMLKAYEMHL 88

Query: 64  --GITDEFL--KDKP----SFSSIFSEFWDFFNEQNAEWIAH----NAKFDVGFINAELQ 111
             G+    L   + P     +        +F N+Q +++  H    N  FD+  ++  L 
Sbjct: 89  ANGL---MLACAEAPKTGYDYKHTALNIHEFLNDQLSQYTLHPAGTNVDFDLRQLDVHLS 145

Query: 112 RINKDPLDPSRIIDTL 127
           R  + P+        L
Sbjct: 146 RHLEHPITQGLHHRKL 161


>gi|78213483|ref|YP_382262.1| DNA polymerase I [Synechococcus sp. CC9605]
 gi|78197942|gb|ABB35707.1| DNA polymerase I [Synechococcus sp. CC9605]
          Length = 986

 Score = 44.1 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 22/147 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +    + FD ETT L+     ++ IG     D          ++ P G K S +++
Sbjct: 383 MACTDSSLPVAFDTETTDLNPFRAELVGIGICWGEDLDAL-----AYI-PLGHKGSEDSI 436

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                      ++ S  ++ +    +    N      NAK+D   +      +       
Sbjct: 437 ----------PEQLSLETVLTALAPWLASSNHPKTLQNAKYDRLILLRHGIALEGV---- 482

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKR 147
             +IDTL     +  S+++ L  + +R
Sbjct: 483 --VIDTLLADYLRDASAKHGLELMAER 507


>gi|237729098|ref|ZP_04559579.1| oligoribonuclease [Citrobacter sp. 30_2]
 gi|226908827|gb|EEH94745.1| oligoribonuclease [Citrobacter sp. 30_2]
          Length = 185

 Score = 44.1 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 58/190 (30%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 5   MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 49

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +  +   ++  E  +  
Sbjct: 50  IAVHQ-SDEQLALMDDWNVRTHTGSGLVERVKASTMGDREAELATLAFLKEWVPEGKSPI 108

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P        L        +
Sbjct: 109 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI------LA-----GFT 157

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 158 KQGTHQAMDD 167


>gi|62089390|dbj|BAD93139.1| DNA polymerase epsilon catalytic subunit variant [Homo sapiens]
          Length = 983

 Score = 44.1 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 80  LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 138

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKD---- 116
                  + ++P  + +   +++   E +    + +N   FD  F+ A            
Sbjct: 139 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMQQE 194

Query: 117 -----------PLDPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 195 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 254

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 255 MATEQPQTLATYSVSDAVATYYLYMKYV 282


>gi|30043801|gb|AAP19520.1| hypothetical protein S4584 [Shigella flexneri 2a str. 2457T]
 gi|56384132|gb|AAN45737.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|110617631|gb|ABF06298.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|281603627|gb|ADA76611.1| Oligoribonuclease [Shigella flexneri 2002017]
          Length = 204

 Score = 44.1 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 24  MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 68

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 69  IAVHQ-SDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 127

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 128 CGNSIGQDRRFLFKYMPELEVYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 176

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 177 KQGTHQAMDD 186


>gi|242237928|ref|YP_002986109.1| exonuclease RNase T and DNA polymerase III [Dickeya dadantii
           Ech703]
 gi|242129985|gb|ACS84287.1| Exonuclease RNase T and DNA polymerase III [Dickeya dadantii
           Ech703]
          Length = 180

 Score = 44.1 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 29/177 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG----RKNS 56
           M+ +N +  I  D+E TGLD + DRIIEI  +                            
Sbjct: 1   MVNENNL--IWIDLEMTGLDPERDRIIEIATLVTDANLNVLAEGPTLAVHQSDSQLALMD 58

Query: 57  PEALKLHGITDEFLKD---KPSFSSIFSEFW------DFFNEQNAEWIAHNAKFDVGFIN 107
              ++ H  T   L D     +F    +E         +     +    ++   D  F+ 
Sbjct: 59  DWNVRTH--TASGLVDRVKASTFDDRAAELATLRFLEQWVPAGKSPICGNSIGQDRRFLF 116

Query: 108 AELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  +          + TL  +ARR  P        L          R+ H A+ D
Sbjct: 117 RYMPELEAYFHYRYLDVSTLKELARRWKPEM------LA-----GFKKRNTHQAMDD 162


>gi|254489693|ref|ZP_05102889.1| exonuclease superfamily [Methylophaga thiooxidans DMS010]
 gi|224465102|gb|EEF81355.1| exonuclease superfamily [Methylophaga thiooxydans DMS010]
          Length = 185

 Score = 44.1 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 57/179 (31%), Gaps = 29/179 (16%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVE---LLDYSKTNRTFQVFLCPNGRK-NSP 57
           + K+K   I  D+E TGLD+ ND IIEI  +     L+       F +            
Sbjct: 1   MAKSKNNLIWIDLEMTGLDTNNDYIIEIATIVTDAKLNVLAEGPIFAIHQQDAILDSMDE 60

Query: 58  EALKLHGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
              + HG +       D  + +  +          +     +    ++   D  F+   +
Sbjct: 61  WNTRQHGKSGLTQRVKDSTVTEAEAEQKTIEFLRKYVPAGVSPMCGNSICQDRRFLARCM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY----GITISHRSKHGALLDSH 165
             +  +     R +D             + L  L +R+      +    + H A+ D  
Sbjct: 121 PEL--EAFFHYRNLDV------------SSLKELARRWAPKVEKSFKKSASHLAMDDVK 165


>gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG]
 gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG]
          Length = 897

 Score = 44.1 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 27/142 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET  L++    ++ +        +        ++    R                +
Sbjct: 323 AFDTETDSLNTYEANLVGLSFCAKEGRA-------FYIPLQHRYL-------------GV 362

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +     +  +    F +     +AHN KFD   ++     IN       ++ DT+ +A
Sbjct: 363 PQQLELEFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEING------KVDDTMIMA 416

Query: 131 RRKHPSSRNDLNSLCK-RYGIT 151
                S ++D++SL K   GI 
Sbjct: 417 YVLKSSGKHDMDSLSKEHLGIE 438


>gi|302678962|ref|XP_003029163.1| hypothetical protein SCHCODRAFT_16670 [Schizophyllum commune H4-8]
 gi|300102853|gb|EFI94260.1| hypothetical protein SCHCODRAFT_16670 [Schizophyllum commune H4-8]
          Length = 622

 Score = 44.1 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 65/187 (34%), Gaps = 28/187 (14%)

Query: 3   RKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R+ K R +   D E   L        E+  V ++D++     +   + P  +       K
Sbjct: 255 RQPKQRSVYALDCEMC-LTEDG---QELARVCMIDFTTDKVMYDRLVKP-AKPILDYLTK 309

Query: 62  LHGITDEFLKDKP---SFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINK 115
             GIT+E L   P   + + + ++   F   ++A     + H+ + D+  +         
Sbjct: 310 WSGITEESL--APVTTTLAEVQADIVRFLTPKDAPMPILMGHSLENDLRALK-------- 359

Query: 116 DPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVY 171
             +     IDT L     +    +  L  L +++    I       H    D+    ++ 
Sbjct: 360 --ICHPLCIDTALMYHHPRGRPLKPGLAWLTRKWCAREIQARGEGGHDPEEDARACVELL 417

Query: 172 IKMMVGG 178
            + +  G
Sbjct: 418 HRKLEYG 424


>gi|242784519|ref|XP_002480403.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218720550|gb|EED19969.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 485

 Score = 44.1 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 54/174 (31%), Gaps = 24/174 (13%)

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINK----------------DPLDPSRIIDTLSIA 130
            + +N   + H+ + D+ ++      I                   P   +  +DTL  A
Sbjct: 285 LHRRNVVLVGHDFQSDIDYLRNLGCNIFPYNDAIPQPQTSSQTLSSPTAQTLFLDTLDTA 344

Query: 131 RRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS-QINFGF 185
                  R      L ++    GI    R+ H A  D+    +  + M++     ++ G 
Sbjct: 345 MMFLALKRDVHSRSLENILNSLGI--HGRNLHNAGNDARFTLEAMVHMIINARLALDKGA 402

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA-IWD 238
           +     +     + V N      +    T + +   +        +  +  IW+
Sbjct: 403 QELSGDYMDWAARPVTNADTALHELAWQTEVERRVSEADATREAQIRDDCKIWE 456


>gi|317144090|ref|XP_001819898.2| hypothetical protein AOR_1_1336154 [Aspergillus oryzae RIB40]
          Length = 585

 Score = 44.1 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 90  QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII---DTLSIAR--RKHPSSRNDLNSL 144
           ++   + H    DV ++     R+ + P   +  I   DT    R  R  P++R  L  +
Sbjct: 493 RHLVLVGHAVSSDVQYLRQIGVRMERKPEGTAGFIGVVDTAEFFRIIRGEPTTR-KLADI 551

Query: 145 CKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            + + +T  H   H A  D+    +V + MM+
Sbjct: 552 LQEFNMTGWH--LHNAGNDARYTMEVMLCMML 581


>gi|293335998|ref|NP_001169493.1| hypothetical protein LOC100383366 [Zea mays]
 gi|224029649|gb|ACN33900.1| unknown [Zea mays]
          Length = 222

 Score = 44.1 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 29/171 (16%)

Query: 8   RKIVFDIETT----GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           + +  D E      G +     +I+I  + +LD           + P          +  
Sbjct: 63  KVLALDCEMCVTKAGFELTRVTLIDIKGLVVLDR---------LVKPANSIIDYN-TRFS 112

Query: 64  GITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           GIT E L D   +   I  EF     ++    + H+ + D+  +           +    
Sbjct: 113 GITAEMLADVSTTLQEIQEEFVGLVYKE-TILVGHSLENDLMALQ----------ISHGL 161

Query: 123 IIDT-LSIARRKHPSSRNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDV 170
           IIDT +    ++    +  L  L +++ G  I +    H ++ D+    ++
Sbjct: 162 IIDTAVLYKYKRGSRCKIALRVLTRKFLGREIQNTGSGHDSVEDAKAALEL 212


>gi|51594770|ref|YP_068961.1| oligoribonuclease [Yersinia pseudotuberculosis IP 32953]
 gi|153949964|ref|YP_001402615.1| oligoribonuclease [Yersinia pseudotuberculosis IP 31758]
 gi|229597226|ref|YP_001722527.2| oligoribonuclease [Yersinia pseudotuberculosis YPIII]
 gi|229597243|ref|YP_001870889.2| oligoribonuclease [Yersinia pseudotuberculosis PB1/+]
 gi|59798016|sp|Q66FC2|ORN_YERPS RecName: Full=Oligoribonuclease
 gi|166918641|sp|A7FMY7|ORN_YERP3 RecName: Full=Oligoribonuclease
 gi|51588052|emb|CAH19658.1| possible oligoribonuclease [Yersinia pseudotuberculosis IP 32953]
 gi|152961459|gb|ABS48920.1| oligoribonuclease [Yersinia pseudotuberculosis IP 31758]
          Length = 181

 Score = 44.1 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 61/184 (33%), Gaps = 43/184 (23%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N+   I  D+E TGLD + DRIIEI  +       T+    +            A +
Sbjct: 1   MAENQNNLIWIDLEMTGLDPERDRIIEIATL------VTDANLNILAEGPVLAVHQSAEQ 54

Query: 62  LHGITD-------------EFLK-----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
           L G+ D             E +K     D+ +          +     +    ++   D 
Sbjct: 55  L-GLMDEWNVRTHTGSGLVERVKTSPFNDRDAELQTIEFLKQWVPAGVSPICGNSVGQDR 113

Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHG 159
            F+   +  +  +     R +D             + L  L +R+   I      ++ H 
Sbjct: 114 RFLFRYMPEL--EAYFHYRYVDV------------STLKELARRWKPEILAGFKKQNTHQ 159

Query: 160 ALLD 163
           AL D
Sbjct: 160 ALDD 163


>gi|21957334|gb|AAM84211.1|AE013664_6 hypothetical protein y0623 [Yersinia pestis KIM 10]
 gi|45435231|gb|AAS60791.1| Oligoribonuclease (3'->5' exoribonuclease) [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 230

 Score = 44.1 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 60/184 (32%), Gaps = 43/184 (23%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N+   I  D+E TGLD + DRIIEI  +       T+    +            A +
Sbjct: 50  MAENQNNLIWIDLEMTGLDPERDRIIEIATL------VTDANLNILAEGPVLAVHQSAEQ 103

Query: 62  LHGITD-------------EFLKDKP-----SFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
           L G+ D             E +K  P     +          +     +    ++   D 
Sbjct: 104 L-GLMDEWNVRTHTGSGLVERVKASPFNDRDAELQTIEFLKQWVPAGVSPICGNSVGQDR 162

Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHG 159
            F+   +  +  +     R +D             + L  L +R+   I      ++ H 
Sbjct: 163 RFLFRYMPEL--EAYFHYRYVDV------------STLKELARRWKPEILAGFKKQNTHQ 208

Query: 160 ALLD 163
           AL D
Sbjct: 209 ALDD 212


>gi|12519147|gb|AAG59361.1|AE005649_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13364618|dbj|BAB38564.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|209750348|gb|ACI73481.1| hypothetical protein ECs5141 [Escherichia coli]
 gi|209750350|gb|ACI73482.1| hypothetical protein ECs5141 [Escherichia coli]
 gi|209750352|gb|ACI73483.1| hypothetical protein ECs5141 [Escherichia coli]
 gi|209750354|gb|ACI73484.1| hypothetical protein ECs5141 [Escherichia coli]
 gi|209750356|gb|ACI73485.1| hypothetical protein ECs5141 [Escherichia coli]
          Length = 204

 Score = 44.1 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 24  MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 68

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 69  IAVHQ-SDEQLALMDGWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 127

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 128 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 176

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 177 KQGTHQAMDD 186


>gi|255729548|ref|XP_002549699.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240132768|gb|EER32325.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 765

 Score = 43.7 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 16 TTGLDSKNDRIIEIGAVELLDYS--KTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDK 73
          TT +   +  +IE  A E LD S  +T     + + P     +P   +LH I+ E +K+ 
Sbjct: 18 TTYVTKDSSELIEF-AWETLDTSTLETLSKDSILVRPINTPITPYCSRLHKISWEHVKNA 76

Query: 74 PSFSSIFSEFWDFFNEQ 90
           SF    ++F  +  ++
Sbjct: 77 GSFKDAIAKFDQYVQDE 93


>gi|15801992|ref|NP_288013.1| putative exodeoxyribonuclease encoded by cryptic prophage CP-933P
           [Escherichia coli O157:H7 EDL933]
 gi|15831540|ref|NP_310313.1| hypothetical protein ECs2286 [Escherichia coli O157:H7 str. Sakai]
 gi|13259624|gb|AAK16992.1|AE006461_17 putative exodeoxyribonuclease encoded by cryptic prophage CP-933P
           [Escherichia coli O157:H7 str. EDL933]
 gi|13361752|dbj|BAB35709.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|320188262|gb|EFW62924.1| exonuclease family protein [Escherichia coli O157:H7 str. EC1212]
 gi|326341943|gb|EGD65724.1| exonuclease family protein [Escherichia coli O157:H7 str. 1044]
 gi|326343493|gb|EGD67255.1| exonuclease family protein [Escherichia coli O157:H7 str. 1125]
          Length = 823

 Score = 43.7 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 45/195 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAV--------------ELLD----YSKTNR-TFQVFLCPNG 52
            D+ET G +  +  II IGA+              + +D        +R T + +L  + 
Sbjct: 645 IDLETMGKNP-DAPIISIGAIFFDPQTGDMGPEFSKTIDLDTAGGVIDRDTMKWWLKQSR 703

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINA 108
              S               D+        +  +F +E + E+  H       FD   +  
Sbjct: 704 EAQSAIMT-----------DEIPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILRR 752

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             +R       P R  +   +          D ++   R  I      +H AL D+   +
Sbjct: 753 SYERQGSP--CPWRYYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDARYQA 806

Query: 169 D----VYIKMMVGGS 179
                ++ K++   +
Sbjct: 807 KYVSAIWQKLIPSQA 821


>gi|77456743|ref|YP_346248.1| oligoribonuclease [Pseudomonas fluorescens Pf0-1]
 gi|123606183|sp|Q3KIZ7|ORN_PSEPF RecName: Full=Oligoribonuclease
 gi|77380746|gb|ABA72259.1| oligoribonuclease [Pseudomonas fluorescens Pf0-1]
          Length = 180

 Score = 43.7 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 54/175 (30%), Gaps = 27/175 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRKNS 56
            +N    I  D+E TGLD +ND IIE+  +                           +  
Sbjct: 1   MQNPQNLIWIDLEMTGLDPENDVIIEMATIVTDSDLNTLAEGPVIAIHHS--DEVLARMD 58

Query: 57  PEALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
               + HG       + +  +    + +   +    +  +  +    ++   D  F+   
Sbjct: 59  EWNTRTHGNSGLTQRVRESRVSMAEAEAETIAFLEQWVPKGKSPICGNSICQDRRFLYTH 118

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++ +       +  + TL  +A R  P  R+                S H AL D
Sbjct: 119 MKALESYFHYRNLDVSTLKELAARWAPDVRDS-----------FKKGSTHLALDD 162


>gi|332669891|ref|YP_004452899.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC
           484]
 gi|332338929|gb|AEE45512.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC
           484]
          Length = 223

 Score = 43.7 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 58/171 (33%), Gaps = 28/171 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP---EALKLH 63
           R +  D E TGLD   D ++E+ AV    D         V + P              +H
Sbjct: 19  RIVWIDCEMTGLDLGADALVEVAAVVTDSDLRVLGGGVDVVVKPPAAALEQMNDFVRAMH 78

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINK 115
              G+ DE L    +      +  D+          A    ++   D  F++ ++  +  
Sbjct: 79  TTSGLLDE-LDAGTTLEDAQQQVLDYVRTWVPEPSKAPLAGNSVGTDKAFLDRDMPELVG 137

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 R+ID  SI   ARR +P          + Y  +      H AL D
Sbjct: 138 HL--HYRVIDVSSIKELARRWYP----------RVYFASPRKNGGHRALAD 176


>gi|15602765|ref|NP_245837.1| oligoribonuclease [Pasteurella multocida subsp. multocida str.
          Pm70]
 gi|13431730|sp|P57885|ORN_PASMU RecName: Full=Oligoribonuclease
 gi|12721214|gb|AAK02984.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 184

 Score = 43.7 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          ++ +K   I  D+E TGLD +++RIIEI  +    +   
Sbjct: 1  MQLDKQNLIWIDLEMTGLDPESERIIEIATIVTDKHLNI 39


>gi|150260590|ref|ZP_01917318.1| oligoribonuclease [Yersinia pestis CA88-4125]
 gi|161484882|ref|NP_667960.2| oligoribonuclease [Yersinia pestis KIM 10]
 gi|161511446|ref|NP_991914.2| oligoribonuclease [Yersinia pestis biovar Microtus str. 91001]
 gi|162419396|ref|YP_001605286.1| oligoribonuclease [Yersinia pestis Angola]
 gi|165926762|ref|ZP_02222594.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936480|ref|ZP_02225048.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011882|ref|ZP_02232780.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213971|ref|ZP_02240006.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167400566|ref|ZP_02306075.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167418918|ref|ZP_02310671.1| oligoribonuclease [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423542|ref|ZP_02315295.1| oligoribonuclease [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218927569|ref|YP_002345444.1| oligoribonuclease [Yersinia pestis CO92]
 gi|229358039|ref|YP_653824.2| oligoribonuclease [Yersinia pestis Antiqua]
 gi|229559847|ref|YP_649232.2| oligoribonuclease [Yersinia pestis Nepal516]
 gi|229836625|ref|ZP_04456791.1| oligoribonuclease [Yersinia pestis Pestoides A]
 gi|229840237|ref|ZP_04460396.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842315|ref|ZP_04462470.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229903946|ref|ZP_04519059.1| oligoribonuclease [Yersinia pestis Nepal516]
 gi|270489066|ref|ZP_06206140.1| exonuclease [Yersinia pestis KIM D27]
 gi|294502475|ref|YP_003566537.1| oligoribonuclease [Yersinia pestis Z176003]
 gi|20138838|sp|Q8ZIW9|ORN_YERPE RecName: Full=Oligoribonuclease
 gi|115346180|emb|CAL19048.1| oligoribonuclease [Yersinia pestis CO92]
 gi|149289998|gb|EDM40075.1| oligoribonuclease [Yersinia pestis CA88-4125]
 gi|162352211|gb|ABX86159.1| oligoribonuclease [Yersinia pestis Angola]
 gi|165915596|gb|EDR34205.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921385|gb|EDR38609.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989241|gb|EDR41542.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204766|gb|EDR49246.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962912|gb|EDR58933.1| oligoribonuclease [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049934|gb|EDR61342.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057712|gb|EDR67458.1| oligoribonuclease [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679716|gb|EEO75819.1| oligoribonuclease [Yersinia pestis Nepal516]
 gi|229690625|gb|EEO82679.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696603|gb|EEO86650.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706309|gb|EEO92317.1| oligoribonuclease [Yersinia pestis Pestoides A]
 gi|262360505|gb|ACY57226.1| oligoribonuclease [Yersinia pestis D106004]
 gi|262364452|gb|ACY61009.1| oligoribonuclease [Yersinia pestis D182038]
 gi|270337570|gb|EFA48347.1| exonuclease [Yersinia pestis KIM D27]
 gi|294352934|gb|ADE63275.1| oligoribonuclease [Yersinia pestis Z176003]
 gi|320013769|gb|ADV97340.1| oligoribonuclease [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 181

 Score = 43.7 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 37/181 (20%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + +N+   I  D+E TGLD + DRIIEI  +       T+    +            A +
Sbjct: 1   MAENQNNLIWIDLEMTGLDPERDRIIEIATL------VTDANLNILAEGPVLAVHQSAEQ 54

Query: 62  LHGITD-------------EFLKDKP-----SFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
           L G+ D             E +K  P     +          +     +    ++   D 
Sbjct: 55  L-GLMDEWNVRTHTGSGLVERVKASPFNDRDAELQTIEFLKQWVPAGVSPICGNSVGQDR 113

Query: 104 GFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
            F+   +  +          + TL  +ARR  P        L          ++ H AL 
Sbjct: 114 RFLFRYMPELEAYFHYRYVDVSTLKELARRWKPEI------LA-----GFKKQNTHQALD 162

Query: 163 D 163
           D
Sbjct: 163 D 163


>gi|157147866|ref|YP_001455185.1| oligoribonuclease [Citrobacter koseri ATCC BAA-895]
 gi|166230513|sp|A8AMN6|ORN_CITK8 RecName: Full=Oligoribonuclease
 gi|157085071|gb|ABV14749.1| hypothetical protein CKO_03672 [Citrobacter koseri ATCC BAA-895]
          Length = 181

 Score = 43.7 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 59/180 (32%), Gaps = 35/180 (19%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N+   I  D+E TGLD + DRIIEI  +       T+    +            A +
Sbjct: 1   MSANENNLIWIDLEMTGLDPERDRIIEIATL------VTDANLNILAEGPTIAVHQSAEQ 54

Query: 62  LHGITDEFLK-----------DKPSFSSIFSEF--WDFFNEQN----AEWIAHNAKFDVG 104
           L  + D  ++              SF    +E    +F  E      +    ++   D  
Sbjct: 55  LALMDDWNVRTHTGSGLVDRVKASSFDDRAAELATIEFLKEWVPAGKSPICGNSIGQDRR 114

Query: 105 FINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   +  +          + TL  +ARR  P        L        + +  H A+ D
Sbjct: 115 FLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI------LA-----GFTKQGTHQAMDD 163


>gi|331247801|ref|XP_003336527.1| RNA exonuclease 4 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309315517|gb|EFP92108.1| RNA exonuclease 4 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 171

 Score = 43.7 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 12/155 (7%)

Query: 18  GLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSF 76
           G+  + +    +  V +++Y          ++ P  +        + GI  E L +  +F
Sbjct: 3   GVGPRGNEQSALARVSIVNYYGNVV--LDTYVQPKEKVTDYR-TWVSGIKPEHLHNASTF 59

Query: 77  SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS 136
             +  +  D  +++    I H    D+  +     R         + +  L  A+ K PS
Sbjct: 60  EDVTRKVADLIHDK--ILIGHAISNDLQALLLTHPRQLIRDTSTYQPLRQL--AKTKFPS 115

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            +           I I  +  H ++ D+     +Y
Sbjct: 116 LK---KLTLLLLDIEI-QKDSHCSVDDARATLAIY 146


>gi|260843550|ref|YP_003221328.1| putative exodeoxyribonuclease [Escherichia coli O103:H2 str. 12009]
 gi|257758697|dbj|BAI30194.1| putative exodeoxyribonuclease [Escherichia coli O103:H2 str. 12009]
          Length = 814

 Score = 43.7 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 59/184 (32%), Gaps = 23/184 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLC---PNGRKNSPEALKLHGITD 67
            D+ET G +  +  I  IGAV       +    F   +      G  +          + 
Sbjct: 636 IDLETMGKNP-DAPIASIGAVFFDPQTGEQGPEFSKIIDMGTCGGTVDISTIEWWLQRSG 694

Query: 68  EF----LKDKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINAELQRINKDPLD 119
           E     L D+        +  +F +E + E+      + A FD   +    +R       
Sbjct: 695 EARAAILADRIPLDDALLQLREFIDENSGEFFVQVWGNGANFDNTILRRSYERQGIP--C 752

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD----VYIKMM 175
           P R  +   +          D ++   R  I      +H AL D+   +     ++ K++
Sbjct: 753 PWRCYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDARYQAKYVSVIWQKLI 808

Query: 176 VGGS 179
              +
Sbjct: 809 PNQA 812


>gi|84000285|ref|NP_001033243.1| putative RNA exonuclease NEF-sp [Bos taurus]
 gi|122142858|sp|Q2T9U5|REXON_BOVIN RecName: Full=Putative RNA exonuclease NEF-sp
 gi|83405453|gb|AAI11263.1| Exonuclease NEF-sp [Bos taurus]
 gi|296473408|gb|DAA15523.1| putative RNA exonuclease NEF-sp [Bos taurus]
          Length = 783

 Score = 43.7 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 59/203 (29%), Gaps = 26/203 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E   L SK   +  I  V        +      + P+ +          GIT + L 
Sbjct: 233 LDCEMC-LTSKGRELTRISLVAEGGGCVMDE----LVKPDNKIVDYL-TSFSGITKKIL- 285

Query: 72  DKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             P       +           +A  + H+   D+  +                +IDT S
Sbjct: 286 -NPVTTKLKDVQRR-LKILLPPDAVLVGHSLDLDLRALKMI----------HPYVIDT-S 332

Query: 129 IARRKHPSSRNDLNSLCKR-YG--ITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
           +   +    R  L  L K   G  I    R  H A  D+    ++    +  G +     
Sbjct: 333 LLYVREQGRRFKLKFLAKAILGKDIQCPDRLGHDATEDARTTLELARYFLKYGPKKIAEL 392

Query: 186 KTNEDRFFKEEKKTVPNISLLKR 208
                  ++E ++       ++R
Sbjct: 393 NLEALFSYQESQEPRNTAEGVQR 415


>gi|312899108|ref|ZP_07758486.1| hypothetical protein HMPREF9429_01785 [Megasphaera micronuciformis
           F0359]
 gi|310619775|gb|EFQ03357.1| hypothetical protein HMPREF9429_01785 [Megasphaera micronuciformis
           F0359]
          Length = 322

 Score = 43.7 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 15/131 (11%)

Query: 26  IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL-----KDKPSFSSIF 80
           I ++   E  +    +R +  ++ P     S        +TD+ +         +F   +
Sbjct: 96  IYKLAFAEFENGEPVDRHY-FYIQPPENDLSK-------VTDKAVNWQVLTKADTFGEYW 147

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND 140
                   E  +  +AHNA F +G I   L+  +    +  R ID L  A+  +    N 
Sbjct: 148 KSGMKDIFEH-SVLVAHNAPFVIGCILHALEVYDIKA-EKLRYIDALETAKELYNFDDNS 205

Query: 141 LNSLCKRYGIT 151
           L  +C   G  
Sbjct: 206 LVGICSESGFE 216


>gi|238784781|ref|ZP_04628783.1| Oligoribonuclease [Yersinia bercovieri ATCC 43970]
 gi|238714294|gb|EEQ06304.1| Oligoribonuclease [Yersinia bercovieri ATCC 43970]
          Length = 181

 Score = 43.7 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 54/190 (28%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           + +N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MAENQNNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPV 45

Query: 60  LKLHGITDEFL-------------------------KDKPSFSSIFSEFWDFFNEQNAEW 94
           L +H  TDE L                          D  +          +     +  
Sbjct: 46  LAVHQ-TDEQLGLMDEWNVRTHTGSGLVERVKASPFSDHDAELQTIEFLKQWVPAGVSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P        L         
Sbjct: 105 CGNSVGQDRRFLFRYMPELEAYFHYRYLDVSTLKELARRWKPEI------LA-----GFK 153

Query: 154 HRSKHGALLD 163
            ++ H AL D
Sbjct: 154 KQNTHQALDD 163


>gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
 gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
          Length = 935

 Score = 43.7 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 22/149 (14%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R  +   +  D ETTGLD     ++ I          T      ++ P G K    A + 
Sbjct: 343 RIRERGYVAVDTETTGLDEMRADLVGICLA-------TEPGLACYV-PLGHK----AAEG 390

Query: 63  HGI--TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            G+  T++  + + + +           ++    I  N K+D   +    +R   D    
Sbjct: 391 EGLFATEDLAEGQMAEAEALEMLKPVLEDEAILKIGQNMKYDAKIL----KRCGIDVAPC 446

Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRY 148
               DT+ I+   +    ++ +++L  RY
Sbjct: 447 D---DTMLISYALNAGLHQHGMDALADRY 472


>gi|291457349|ref|ZP_06596739.1| oligoribonuclease [Bifidobacterium breve DSM 20213]
 gi|291381184|gb|EFE88702.1| oligoribonuclease [Bifidobacterium breve DSM 20213]
          Length = 225

 Score = 43.7 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 59/169 (34%), Gaps = 23/169 (13%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP---EALKL 62
           R I  D E TGLD    D ++E+  V    D +  +      + P+ +  +       ++
Sbjct: 25  RLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSEKAVNHMNDFVRQM 84

Query: 63  H---GITDEF---LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           H   G+ +E+   L    +   +      F  E     +A N    D  F++  +  +  
Sbjct: 85  HTRSGLINEWENGLSLAEAEQKVTEYVLRFTPEGVRPLLAGNTIGSDKKFLDHYMPDLMS 144

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                S  + TL  +ARR +P            Y         H AL D
Sbjct: 145 HLHYRSVDVSTLKELARRWYP----------AVYENRPPKNGGHRALAD 183


>gi|147678493|ref|YP_001212708.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274590|dbj|BAF60339.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 751

 Score = 43.7 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 48/142 (33%), Gaps = 32/142 (22%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D   D I+ +              + V++ P    N+              
Sbjct: 140 AFDTETTGVDVYQDVIVGVSLTLPRAG------YHVYI-PVAHNNA-------------- 178

Query: 71  KDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              P      + +    +  +     + HNAKFD+  +     R+           DT+ 
Sbjct: 179 --GPQLRRSYVLNGLKRYLTDPTVGKVLHNAKFDIHMLLRHGMRM------RGLAHDTMI 230

Query: 129 IARRKHPSSRND-LNSLCKRYG 149
             +  + +  +  L +L  RYG
Sbjct: 231 AMKILNENEPSVALKNLATRYG 252


>gi|32477714|ref|NP_870708.1| DNA polymerase I [Rhodopirellula baltica SH 1]
 gi|32448268|emb|CAD77785.1| DNA polymerase I [Rhodopirellula baltica SH 1]
          Length = 1027

 Score = 43.7 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 44/149 (29%), Gaps = 33/149 (22%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           +   K   +  D ETT   ++   +  I I            R       P+G     E 
Sbjct: 441 VELAKQTVLAIDTETTSTHARGCDLVGISIAWQPGEAAYIPVR------APDGDPAINEL 494

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +                  +     D       E + HN KFDV  + +   ++      
Sbjct: 495 I------------------VIEILRDVLESSAIEKVGHNLKFDVIVLRSAGVQLGGIT-- 534

Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKR 147
               +DT+      +   RN  L+ L +R
Sbjct: 535 ----MDTMVADYLLNSGGRNHGLDDLAQR 559


>gi|300715033|ref|YP_003739836.1| Oligoribonuclease [Erwinia billingiae Eb661]
 gi|299060869|emb|CAX57976.1| Oligoribonuclease [Erwinia billingiae Eb661]
          Length = 181

 Score = 43.7 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 51/152 (33%), Gaps = 22/152 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL- 60
           +  N    I  D+E TGLD + DRIIEI  +                 P    +  +A  
Sbjct: 1   MTANASNLIWIDLEMTGLDPEQDRIIEIATLVTDADLNILAE-----GPVFAVHQSDAQL 55

Query: 61  ------KLHGITDEFLKDKP--------SFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGF 105
                  ++  T+  L ++         +      EF   +  E ++    ++   D  F
Sbjct: 56  ALMDEWNVNTHTNSGLVERVKASQYDDRAAEQATIEFLKKWVPENSSPICGNSIGQDRRF 115

Query: 106 INAELQRINKDPLDPSRIIDTL-SIARRKHPS 136
           +   +  +          + TL  +ARR  P 
Sbjct: 116 LFKYMPELEAYFHYRYLDVSTLKELARRWKPG 147


>gi|167044412|gb|ABZ09089.1| hypothetical protein ALOHA_HF4000APKG6D3ctg6g6 [uncultured marine
           crenarchaeote HF4000_APKG6D3]
          Length = 484

 Score = 43.7 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 31/165 (18%)

Query: 1   MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRKNSP 57
           MI   + + +I  D+E  G+D ++      G +  +DY      R     +    +  S 
Sbjct: 289 MIDFPERKVEIFLDLE--GIDPQSAE----GGIPQIDYLIGIIVR-----VDSKEKYISF 337

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            A   +               +  EF +F  +QN   I H   ++   +   ++    D 
Sbjct: 338 TAKDTNH-----------EKEMLLEFLEFIKKQNDYVIYHYHHYEKTHLTKMMENYEIDE 386

Query: 118 LDPSRIIDTLSIARR------KHPSSRNDLNSLCKRYGITISHRS 156
                ++D L    +        P+  N L  +    G +  H+ 
Sbjct: 387 ATKKMVLDYLIDVYKVATNSVVFPTYGNGLKQIAPYLGFSWRHKD 431


>gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB]
 gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB]
          Length = 928

 Score = 43.7 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 84/248 (33%), Gaps = 61/248 (24%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ET  LD+ +  I+ I                  + P      P A   H   D   
Sbjct: 352 AFDLETDALDTLSANIVGI---------------SFAVAPGEAAYLPVA---HDYLDA-- 391

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D+   +++ ++      ++NA  +  N K+D G +       N D        D +  +
Sbjct: 392 PDQLDRAAVLAQLKPLLEDENAWKVGQNLKYDRGVLK------NYDIELAGIKFDAMLES 445

Query: 131 RRKHPS-SRNDLNSLCKRY----------------------GITISHRSKHGALLDSHLL 167
              +    ++D++SL  R+                       I +   + H A  D+ + 
Sbjct: 446 YILNSVVGKHDMDSLAARWLNHKTVTFQEIAGKGKNQLTFNQIALEQ-AAHYAAEDADVT 504

Query: 168 SDVYIKM---MVGGS-------QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
             +++KM   +   +       QI     T   R  +       +I L +  K L  R+ 
Sbjct: 505 LQLHLKMWPELEKEAGPKKVFEQIEMPLLTVISRIERNGVLIDQSI-LAQHSKELTARLA 563

Query: 218 KEELDEHD 225
           + EL  H+
Sbjct: 564 ELELKAHE 571


>gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 897

 Score = 43.7 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 27/142 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD ET  L++    ++ +        +        ++    R                +
Sbjct: 323 VFDTETDSLNTYEANLVGLSFCAKEGRA-------FYIPLQHRYL-------------GV 362

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +     +  +    F +     +AHN KFD   ++     IN       ++ DT+ +A
Sbjct: 363 PQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEING------KVDDTMIMA 416

Query: 131 RRKHPSSRNDLNSLCK-RYGIT 151
                S ++D++SL K   GI 
Sbjct: 417 YVLKSSGKHDMDSLSKEHLGIE 438


>gi|271502182|ref|YP_003335208.1| exonuclease RNase T and DNA polymerase III [Dickeya dadantii
           Ech586]
 gi|270345737|gb|ACZ78502.1| Exonuclease RNase T and DNA polymerase III [Dickeya dadantii
           Ech586]
          Length = 180

 Score = 43.7 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 62/183 (33%), Gaps = 41/183 (22%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA- 59
           M+ +N +  I  D+E TGLD + DRIIEI  +                 P    + P++ 
Sbjct: 1   MVNENNL--IWIDLEMTGLDPERDRIIEIATLVTDANLNVLAE-----GPTLAVHQPDSQ 53

Query: 60  --------LKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVG 104
                   ++ H   G+ +     +    +   E   F  +      +    ++   D  
Sbjct: 54  LALMDDWNVRTHTASGLVERVKASRVDEDAAQRETIAFLQQWVPAGKSPICGNSIGQDRR 113

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGA 160
           F+   +  +  +     R +D             + L  L +R+   I      R+ H A
Sbjct: 114 FLFRYMPEL--EAYFHYRYLDV------------STLKELARRWKPEILTGFKKRNTHQA 159

Query: 161 LLD 163
           L D
Sbjct: 160 LDD 162


>gi|172087346|ref|XP_001913215.1| hypothetical exonuclease containing protein-like protein
           [Oikopleura dioica]
 gi|42601342|gb|AAS21368.1| hypothetical exonuclease containing protein-like protein
           [Oikopleura dioica]
          Length = 646

 Score = 43.7 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 24/168 (14%)

Query: 25  RIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSE 82
            I E    +  L   +    F  F+CP      S    KL  +  + L  + +   +  +
Sbjct: 56  EITEFPAVLVNLSTEEIISEFHEFVCPKESPELSDFCKKLTHLEKKDLSKEKTLEEVMID 115

Query: 83  F----WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138
           F     D   E +  +       D    +  L    +  ++   ++ +    R     SR
Sbjct: 116 FELWTKDVQKEHDLYF---YTPKDWDISSQLLSETKRKKIEIPEMLKSWVDLRAV---SR 169

Query: 139 NDLNSLCKRYG-ITISHR-----------SKHGALLDSHLLSDVYIKM 174
             L S+ K+ G I +  R             H  + D+   + + +KM
Sbjct: 170 VYLQSVNKKMGHIPVLRRLFRVLKMEWEGKHHSGIDDARNTARLAVKM 217


>gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB]
 gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB]
          Length = 906

 Score = 43.7 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 43/138 (31%), Gaps = 26/138 (18%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D ETT LDS   RI+ I                + + P      P A   H  T   +
Sbjct: 332 ALDTETTSLDSFAARIVGI---------------SLSVTPGEACYIPLA---H--TAPGV 371

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D+     + +    +      + +  NAK+D           N          DT+  +
Sbjct: 372 ADQLPREEVLARLKSWLESAAHKKVLQNAKYDQHVF------ANHGIALSGIAHDTMLQS 425

Query: 131 RRKHPSSRNDLNSLCKRY 148
                   +DL  LC R+
Sbjct: 426 YVIESDKGHDLGQLCTRH 443


>gi|89094643|ref|ZP_01167580.1| oligoribonuclease [Oceanospirillum sp. MED92]
 gi|89081113|gb|EAR60348.1| oligoribonuclease [Oceanospirillum sp. MED92]
          Length = 186

 Score = 43.7 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 53/174 (30%), Gaps = 29/174 (16%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGR-KNSPEAL 60
           +K   I  D+E TGL+   D IIEI  +             T  +               
Sbjct: 8   DKNNLIWIDLEMTGLEPATDVIIEIATIVTDSDLNVLAEGPTLAIHQSDEIMDNMDEWCT 67

Query: 61  KLHGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             HG +       +  + +  +  +       +     +    ++   D  F++  +  +
Sbjct: 68  NQHGKSGLTQRVKESTVTEAEAEQATIEFLKQYVEAGVSPMCGNSIGQDRRFLDKYMPEL 127

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
             +     R +D             + L  L KR+   ++     +  H AL D
Sbjct: 128 --EAFFHYRNLDV------------SSLKELAKRWKPEVAAGVVKKGSHLALDD 167


>gi|312946176|gb|ADR27003.1| putative exonuclease [Escherichia coli O83:H1 str. NRG 857C]
          Length = 823

 Score = 43.7 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 63/198 (31%), Gaps = 51/198 (25%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE---ALKLH---GI 65
            D+ET G +  +  II IGA+              F  P      PE    + L+   G+
Sbjct: 645 IDLETMGKNP-DAPIISIGAI--------------FFDPQTGDMGPEFSKTIDLNTAGGV 689

Query: 66  TDEFL----------------KDKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGF 105
            D  +                 D+        +  +F +E + E+      + A FD   
Sbjct: 690 IDRDVIKWWLKQSREAQSAIMTDEIPLDDALLQLREFIDENSGEFFVQVWGNGANFDNTI 749

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           +    +R       P R  +   +          D ++   R  I      +H AL D+ 
Sbjct: 750 LRRSYERQGIP--CPWRYYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDAR 803

Query: 166 LLSD----VYIKMMVGGS 179
             +     ++ K++   +
Sbjct: 804 YQAKYVSVIWQKLIPSQA 821


>gi|262045407|ref|ZP_06018430.1| oligoribonuclease [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330003307|ref|ZP_08304578.1| oligoribonuclease [Klebsiella sp. MS 92-3]
 gi|259037236|gb|EEW38484.1| oligoribonuclease [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328537018|gb|EGF63306.1| oligoribonuclease [Klebsiella sp. MS 92-3]
          Length = 181

 Score = 43.7 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFL-CPNGRKNSP 57
           +  N+   I  D+E TGLD + DRIIEI  +             T  V            
Sbjct: 1   MSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDAQLALMDE 60

Query: 58  EALKLH---GITD----EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
             ++ H   G+ D      + +  +  +       +     +    ++   D  F+   +
Sbjct: 61  WNVRTHTGSGLVDRVKASTVSEHDAELATIEFLKQWVPAGKSPICGNSIGQDRRFLFKYM 120

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++          + TL  +ARR  P     L+            +  H A+ D
Sbjct: 121 PQLEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFKKQGTHQAMDD 163


>gi|255319398|ref|ZP_05360614.1| oligoribonuclease [Acinetobacter radioresistens SK82]
 gi|262380862|ref|ZP_06074013.1| oligoribonuclease [Acinetobacter radioresistens SH164]
 gi|255303534|gb|EET82735.1| oligoribonuclease [Acinetobacter radioresistens SK82]
 gi|262297497|gb|EEY85415.1| oligoribonuclease [Acinetobacter radioresistens SH164]
          Length = 187

 Score = 43.7 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 52/164 (31%), Gaps = 20/164 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNG 52
           M      R I  D+E TGLD+ ND+IIEI  +   D+                  L    
Sbjct: 1   MSSTPDTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNILAEGPVLAIHQSDQVLN--- 57

Query: 53  RKNSPEALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
                   + HG       +    L    +          + N + +    ++   D  F
Sbjct: 58  -AMDEWNTRQHGQSGLIQRVRRSTLTALEAEQQTIDFLKKWVNPKTSPMCGNSICQDRRF 116

Query: 106 INAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRY 148
           ++  +  + +     +  + ++  +A+R  P   + L       
Sbjct: 117 LHRLMPELEQFFHYRNLDVSSVKELAKRWRPEIMSGLKKQASHL 160


>gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493]
 gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493]
          Length = 902

 Score = 43.7 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 64/200 (32%), Gaps = 54/200 (27%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +    +   FD ETT  ++   +++ +                  + P+     P   
Sbjct: 317 MKKLADAKVFAFDTETTDFNAIQAKLVGV---------------SFAVSPHEAAYVPLGH 361

Query: 61  KLHGITDEFLKDKPSF---SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              G         P+      +  E      + N   I  N K+D   +        +  
Sbjct: 362 DYTG--------APAQLDKEEVLRELKPLLEDPNKTIICQNLKYDAEVL------AKEGL 407

Query: 118 LDPSRIIDTLSIARRKHPSS-RNDLNSLCKRY-----------------GITISHRSKHG 159
              ++  DTL  +   + SS R+DLN+L  +Y                  I+ +H +   
Sbjct: 408 TIRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDK 467

Query: 160 ALL----DSHLLSDVYIKMM 175
           A      D+ +   ++ K+M
Sbjct: 468 ATAYAAEDADVTLQLHHKLM 487


>gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331]
 gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331]
          Length = 902

 Score = 43.7 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 64/200 (32%), Gaps = 54/200 (27%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +    +   FD ETT  ++   +++ +                  + P+     P   
Sbjct: 317 MKKLADAKVFAFDTETTDFNAIQAKLVGV---------------SFAVSPHEAAYVPLGH 361

Query: 61  KLHGITDEFLKDKPSF---SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              G         P+      +  E      + N   I  N K+D   +        +  
Sbjct: 362 DYTG--------APAQLDKEEVLRELKPLLEDPNKTIICQNLKYDAEVL------AKEGL 407

Query: 118 LDPSRIIDTLSIARRKHPSS-RNDLNSLCKRY-----------------GITISHRSKHG 159
              ++  DTL  +   + SS R+DLN+L  +Y                  I+ +H +   
Sbjct: 408 TIRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDK 467

Query: 160 ALL----DSHLLSDVYIKMM 175
           A      D+ +   ++ K+M
Sbjct: 468 ATAYAAEDADVTLQLHHKLM 487


>gi|300920814|ref|ZP_07137214.1| exonuclease [Escherichia coli MS 115-1]
 gi|537006|gb|AAA97061.1| ORF_o204a [Escherichia coli str. K-12 substr. MG1655]
 gi|73858127|gb|AAZ90834.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81243603|gb|ABB64313.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|115515635|gb|ABJ03710.1| oligoribonuclease [Escherichia coli APEC O1]
 gi|300412206|gb|EFJ95516.1| exonuclease [Escherichia coli MS 115-1]
          Length = 204

 Score = 43.7 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 24  MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 68

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 69  IAVHQ-SDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 127

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 128 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 176

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 177 KQGTHQAMDD 186


>gi|313215127|emb|CBY42833.1| unnamed protein product [Oikopleura dioica]
          Length = 604

 Score = 43.7 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 24/168 (14%)

Query: 25  RIIEI-GAVELLDYSKTNRTFQVFLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIFSE 82
            I E    +  L   +    F  F+CP      S    KL  +  + L  + +   +  +
Sbjct: 14  EITEFPAVLVNLSTEEIISEFHEFVCPKESPELSDFCKKLTHLEKKDLSKEKTLEEVMID 73

Query: 83  F----WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138
           F     D   E +  +       D    +  L    +  ++   ++ +    R     SR
Sbjct: 74  FELWTKDVQKEHDLYF---YTPKDWDISSQLLSETKRKKIEIPEMLKSWVDLRAV---SR 127

Query: 139 NDLNSLCKRYG-ITISHR-----------SKHGALLDSHLLSDVYIKM 174
             L S+ K+ G I +  R             H  + D+   + + +KM
Sbjct: 128 VYLQSVNKKMGHIPVLRRLFRVLKMEWEGKHHSGIDDARNTARLAVKM 175


>gi|220935101|ref|YP_002514000.1| exonuclease [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996411|gb|ACL73013.1| exonuclease [Thioalkalivibrio sp. HL-EbGR7]
          Length = 193

 Score = 43.7 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 69/191 (36%), Gaps = 26/191 (13%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC------PNGRKNS 56
           + N    +  DIE  G       ++ + +V      +   +F V L        + R   
Sbjct: 5   KANPEIYVSTDIEADGPIPGPHSMLSLASVAYDPDGQEMGSFSVNLETLEGAEAHPRMVE 64

Query: 57  -----PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAE 109
                PEA        E  KD  +       + D+       A ++   A +D  ++   
Sbjct: 65  WWAQFPEAWA------ECRKDLVAPEPAMQAYADWIEALPGRAVFVGWPAGWDFMWVYWY 118

Query: 110 LQRI-NKDPLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG--ALLDSH 165
           L R   + P   +   I T ++A R+    ++  + L KR+    S +  H   AL D+ 
Sbjct: 119 LMRFTGRRPFHENALDIRTYAMALRRLEYRKSGKSYLPKRW---FSEQRPHTHVALDDAR 175

Query: 166 LLSDVYIKMMV 176
              ++++ M+ 
Sbjct: 176 EQGELFMHMLR 186


>gi|119474830|ref|ZP_01615183.1| oligoribonuclease [marine gamma proteobacterium HTCC2143]
 gi|119451033|gb|EAW32266.1| oligoribonuclease [marine gamma proteobacterium HTCC2143]
          Length = 195

 Score = 43.7 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 53/169 (31%), Gaps = 21/169 (12%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----SPEALK 61
            +  I  D+E TGL+   D IIEI  +       T     V      ++           
Sbjct: 13  DLNLIWIDLEMTGLEPATDHIIEIATIVTDSDLNTIAEGPVLAIHQSQEILSGMDEWNTT 72

Query: 62  LH---GITD----EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            H   G+TD      + D+ +          +  E  +    ++   D  F+   +  + 
Sbjct: 73  HHGSSGLTDRVKQSLIVDRDAEQLTLEFLRQYVPEGTSPICGNSIGQDRRFLVKYMPELE 132

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 +  + TL   +      R DL S         + +  H AL D
Sbjct: 133 AYFHYRNLDVSTL---KELMRRWRPDLIS-------GFNKKGAHLALDD 171


>gi|74200863|dbj|BAE24794.1| unnamed protein product [Mus musculus]
          Length = 1273

 Score = 43.7 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 272 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 330

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKDPL-- 118
                  + ++P    +   +++   E +    + +N   FD  F+ A            
Sbjct: 331 ----PFCVFNEPDEVHLIQRWFEHIQETKPTIMVTYNGDFFDWPFVEARAAIHGLSMYQE 386

Query: 119 -------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 387 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 446

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 447 MATEQPQTLATYSVSDAVATYYLYMKYV 474


>gi|307313309|ref|ZP_07592933.1| hypothetical protein SinmeBDRAFT_5759 [Sinorhizobium meliloti
           BL225C]
 gi|307320758|ref|ZP_07600169.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306893576|gb|EFN24351.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306899322|gb|EFN29957.1| hypothetical protein SinmeBDRAFT_5759 [Sinorhizobium meliloti
           BL225C]
          Length = 178

 Score = 43.7 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 55/175 (31%), Gaps = 38/175 (21%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLHGIT 66
            +  D E + L+ K    IE+  V         R+    + P  +    S EA ++HGI+
Sbjct: 2   IVFLDFEASSLN-KKSFPIEVAWVFQD-----GRSRSYLIRPAPDWTDWSAEAEEVHGIS 55

Query: 67  DEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
              L+ +    + +  E             A    +D  +++  L+              
Sbjct: 56  RGMLRAEGLPVAFVAEEMIRELA--GHRLYASAPSWDGKWLSVLLRAAGLP--------- 104

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSK----------------HGALLDS 164
               A R   S    L++  ++ G   S +                  H AL D+
Sbjct: 105 --RHALRLKRSDEAFLDAARRKMGDRFSDQEISDLVLGVIGATGPPPVHRALPDA 157


>gi|82701847|ref|YP_411413.1| oligoribonuclease [Nitrosospira multiformis ATCC 25196]
 gi|82409912|gb|ABB74021.1| Exonuclease [Nitrosospira multiformis ATCC 25196]
          Length = 184

 Score = 43.7 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 59/177 (33%), Gaps = 29/177 (16%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           + ++  R I  D+E +GL    DRI+EI  V      +      V +             
Sbjct: 1   MTQDNGRLIWIDMEMSGLSPDRDRILEIALVVTDSQLEVLAEAPVLVLSQSESVLEGMDS 60

Query: 62  LH-------GITDEFLKDKPSFSSI----FSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
            +       G+ ++      + + +     +   +  +   +    ++   D  F+   +
Sbjct: 61  WNKSTHAKSGLVEKVRASGLTEAEVEVHMIAFLQEHISAGVSPMCGNSICQDRRFLARWM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGALLD 163
            R+  +     R +D             + L  L KR+   I    + + KH AL D
Sbjct: 121 PRL--EAYFHYRNLDV------------STLKELAKRWKPEILAGVTKQCKHEALSD 163


>gi|301775617|ref|XP_002923229.1| PREDICTED: DNA polymerase epsilon catalytic subunit A-like
           [Ailuropoda melanoleuca]
          Length = 2307

 Score = 43.7 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 68/215 (31%), Gaps = 61/215 (28%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT--------FQVFLCPNGRKN 55
           + FDIETT L     D + D+I+ I   ++   Y  TNR         F+    P    +
Sbjct: 269 LAFDIETTKLPLKFPDPETDQIMMISYMIDGQGYLITNREIVSDDVEDFEF--TPKPEYD 326

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRI 113
            P            + ++P    +   +++   E +    + +N   FD  F+ A     
Sbjct: 327 GPFC----------VFNEPDEGHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAIH 376

Query: 114 NKDPL---------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITI 152
                                    +D L   +R    P   ++L +  K + G   + +
Sbjct: 377 GLSMYQEIGFQKDSQGEYKASQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVEL 436

Query: 153 SHRSKHG------------ALLDSHLLSDVYIKMM 175
                              ++ D+     +Y+K +
Sbjct: 437 DPEDMCRMATEQPQTLATYSVSDAVATYYLYMKYV 471


>gi|222111840|ref|YP_002554104.1| DNA polymerase i [Acidovorax ebreus TPSY]
 gi|221731284|gb|ACM34104.1| DNA polymerase I [Acidovorax ebreus TPSY]
          Length = 922

 Score = 43.7 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 43/161 (26%), Gaps = 36/161 (22%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + R         D ETT LD     I+ +                  + P      P  L
Sbjct: 339 LARLKAAPLAALDTETTSLDELRAEIVGV---------------SFSVEPGAAAYIP--L 381

Query: 61  KLHGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             +G       D P     + +      +  +     +  + K+D           N   
Sbjct: 382 AHNG------PDAPPQLPLAEVLERLRPWLEDPACPKLGQHVKYDRHVF------ANHGI 429

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRY----GITISH 154
                  DT+  +        + L SL +R+    GI+   
Sbjct: 430 QVRGYAHDTMLQSYVLEVHKPHGLTSLAERHTGRTGISYED 470


>gi|149195468|ref|ZP_01872548.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
 gi|149134383|gb|EDM22879.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
          Length = 873

 Score = 43.7 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 31/147 (21%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I K +   + FD ETT L  +N +I+        + +        +L             
Sbjct: 315 IDKIEDNIVSFDTETTSL--ENPKIVGFSFAFEENKAYYVPINHFYL------------- 359

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
                   +  +               ++    I HN KFD   +     +       P+
Sbjct: 360 -------GVSKQIDEKIALKAIEKILEKK---VIGHNLKFDFKMLKDYKIK------TPT 403

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY 148
              DT+ +     P S   L+SL KRY
Sbjct: 404 PFADTMILGWIIDPDSPVGLDSLAKRY 430


>gi|251792379|ref|YP_003007105.1| oligoribonuclease [Aggregatibacter aphrophilus NJ8700]
 gi|247533772|gb|ACS97018.1| oligoribonuclease [Aggregatibacter aphrophilus NJ8700]
          Length = 181

 Score = 43.7 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 58/183 (31%), Gaps = 41/183 (22%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNGR 53
           +  +K   I  D+E TGLD + +RIIEI  +                       L     
Sbjct: 1   MELDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQPDELLN---- 56

Query: 54  KNSPEALKLHGITDEFLKDKPSFS---SIFSEFW------DFFNEQNAEWIAHNAKFDVG 104
           K S   +K H  T   L ++   S      +E         +  +  +    ++   D  
Sbjct: 57  KMSEWCVKTH--TANGLVERVKMSKLNERAAELQTLGFLKKYVPKGTSPICGNSVAQDKR 114

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGA 160
           F+   +  +        R +D             + L  L  R+   I    S ++ H A
Sbjct: 115 FLFKYMPEL--ADYFHYRHLDV------------STLKELAARWKPEILNGFSKQNTHLA 160

Query: 161 LLD 163
           L D
Sbjct: 161 LDD 163


>gi|33151672|ref|NP_873025.1| oligoribonuclease [Haemophilus ducreyi 35000HP]
 gi|38372407|sp|Q7VNN8|ORN_HAEDU RecName: Full=Oligoribonuclease
 gi|33147893|gb|AAP95414.1| oligoribonuclease [Haemophilus ducreyi 35000HP]
          Length = 183

 Score = 43.7 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 59/179 (32%), Gaps = 31/179 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNG 52
           M +      I  D+E TGLD   DRIIEI  +                       L    
Sbjct: 1   MNKLANQHLIWIDLEMTGLDPNQDRIIEIATIVTDKDLNILAKGPVLAVHQPNTLL---- 56

Query: 53  RKNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGF 105
            K +   +K H   G+ +   + K +  +   +  DF  +     ++    ++   D  F
Sbjct: 57  SKMNEWCIKTHTANGLIERVKQSKLTERAAELQTLDFLKQWVMKGSSPICGNSVAQDKRF 116

Query: 106 INAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   +  +          + TL  +ARR  P     L           S ++ H AL D
Sbjct: 117 LYQYMPDLADYFHYRHLDVSTLKELARRWKPEI---LQ--------QFSKKNSHLALDD 164


>gi|291002083|ref|XP_002683608.1| exonuclease family protein [Naegleria gruberi]
 gi|284097237|gb|EFC50864.1| exonuclease family protein [Naegleria gruberi]
          Length = 366

 Score = 43.7 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 29/202 (14%)

Query: 2   IRKNKMRK---IVFDIETT---GLDS----KNDRIIEI-GAVELLDYSKTNRTFQVFLCP 50
           I   + R    ++ D E T   G++      N  +IE    V  L   +     + ++ P
Sbjct: 125 IHNGRHRYDYLVIIDFEATCDNGVNPVITRDNQEMIEFPFVVFDLASMEVIHKERYYVKP 184

Query: 51  N-GRKNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFF------NEQNAEWIAHNAKFD 102
               K +P   +L GITDE L K+  S S+    F ++        +            +
Sbjct: 185 TWSDKLTPFCTQLTGITDEILEKEGISLSNAIQNFHNYVKKTFTDGKTFCIL----TDSE 240

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR-----NDLNSLCKRYGITISHRSK 157
                  ++      +       T    R+++           L S+  + G++      
Sbjct: 241 WDIKGLLIKEATTKGISFDSYFRTFYDLRKEYSKCYPYAFVRGLKSMVDQSGLSFVG-QH 299

Query: 158 HGALLDSHLLSDVYIKMMVGGS 179
           H  L D   +S++  +M+  G 
Sbjct: 300 HSGLCDCLTISEIVKRMIYDGH 321


>gi|238924002|ref|YP_002937518.1| possible elongation subunit of DNA-dependent DNA polymerase
           [Eubacterium rectale ATCC 33656]
 gi|238875677|gb|ACR75384.1| possible elongation subunit of DNA-dependent DNA polymerase
           [Eubacterium rectale ATCC 33656]
 gi|291524743|emb|CBK90330.1| DNA polymerase family B, exonuclease domain [Eubacterium rectale
           DSM 17629]
          Length = 365

 Score = 43.7 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 35/159 (22%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++N M    FDIETTG       +  IG    + +    ++ F   +          A  
Sbjct: 22  KENTM---FFDIETTGFSPVKAIVYMIGCARRIKNRIVIDQYFAESVDDEAAVIEAFAGS 78

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINK-DPLD 119
           L G                           +  I+ N   FD+ F+  + ++  + DP  
Sbjct: 79  LSG--------------------------CSTIISFNGVGFDIPFLKNKYKKYKQEDPFC 112

Query: 120 PSRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHR 155
             +I+D    LS  +           S+    GI    +
Sbjct: 113 NVQILDIFKELSPIKPLLCLENYKQKSIEAFLGIDREDK 151


>gi|190889822|ref|YP_001976364.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
 gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
          Length = 997

 Score = 43.7 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 84/247 (34%), Gaps = 41/247 (16%)

Query: 10  IVFDIETTGLDSKNDRII--EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + FD ETT LD+    ++   +   + +      +    +L P   KN    L       
Sbjct: 399 VAFDTETTSLDAMQAELVGFSMAIADNVADPTGTKIRAAYL-PLAHKNGVGDLL----GG 453

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              +++               +++   +A N K+D   +    +R   +        DT+
Sbjct: 454 GLAENQVPMRDALPRLKALLEDESVLKVAQNLKYDYLLL----KRYGIETKSFD---DTM 506

Query: 128 SIARRKHPS-SRNDLNSLCKRY-----------------GITIS----HRSKHGALLDSH 165
            I+         + ++ L +++                  +T       R+ H A  D+ 
Sbjct: 507 LISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSGRANVTFDLVDIDRATHYAAEDAD 566

Query: 166 LLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL--LKRDKPLFTRITKEELDE 223
           +   ++  +++    +  G  +  +R  +     +  +    +  D+ + +R++  EL +
Sbjct: 567 VTLRLW--LVLKPRLVAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSG-ELAQ 623

Query: 224 HDKTIQT 230
               ++ 
Sbjct: 624 GAARLED 630


>gi|167010003|ref|ZP_02274934.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200]
          Length = 897

 Score = 43.7 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 27/142 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET  L++    ++ +        +        ++    R                +
Sbjct: 323 AFDTETDSLNAYEANLVGLSFCAKEGRA-------FYIPLQHRYL-------------GV 362

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +     +  +    F +     +AHN KFD   ++     IN       ++ DT+ +A
Sbjct: 363 PQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEING------KVDDTMIMA 416

Query: 131 RRKHPSSRNDLNSLCK-RYGIT 151
                S ++D++SL K   GI 
Sbjct: 417 YVLKSSGKHDMDSLSKEHLGIE 438


>gi|269966857|ref|ZP_06180930.1| oligoribonuclease [Vibrio alginolyticus 40B]
 gi|269828524|gb|EEZ82785.1| oligoribonuclease [Vibrio alginolyticus 40B]
          Length = 219

 Score = 43.7 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 60/180 (33%), Gaps = 35/180 (19%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPE-- 58
           +  +    I  D+E TGLD +  +IIEI ++       T+    +    P    + PE  
Sbjct: 39  MSFSDQNLIWVDLEMTGLDPETHKIIEIASI------VTDSELNILAEGPVLAIHQPEEE 92

Query: 59  -------ALKLH---GI----TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
                      H   G+     +  + ++ + +        +  +  +    ++   D  
Sbjct: 93  LAKMDDWCTNTHTASGLVERVRNSQISEQDAVAQTIEFLEKWVPKGASPICGNSIGQDRR 152

Query: 105 FINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   +  + +        + TL  +ARR  P   N             + +  H AL D
Sbjct: 153 FLYKHMPELEEFFHYRYVDVSTLKELARRWQPEVLNG-----------FTKQGTHLALDD 201


>gi|219815948|gb|ACL37073.1| DNA polymerase I [uncultured bacterium]
          Length = 944

 Score = 43.7 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETT L +    ++ +               + +  P                     
Sbjct: 373 FDTETTSLVAIEAELVGLALSYYAG--------EAYYVPFP------------------A 406

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           DK    +I  EF      +N + I  N K+D+  +      I  +        DT+  + 
Sbjct: 407 DKAQTQAILEEFRGVLESENIKKIGQNLKYDITVLKKYNIEIKGE------CFDTMLASY 460

Query: 132 RKHPSSRNDLNSLCKRY 148
              P +R+ ++++ ++Y
Sbjct: 461 LLDPDNRHSMDAMAEKY 477


>gi|161485837|ref|NP_710030.3| oligoribonuclease [Shigella flexneri 2a str. 301]
 gi|161486369|ref|NP_839708.2| oligoribonuclease [Shigella flexneri 2a str. 2457T]
 gi|229774924|ref|YP_691603.2| oligoribonuclease [Shigella flexneri 5 str. 8401]
 gi|41017443|sp|Q83IJ9|ORN_SHIFL RecName: Full=Oligoribonuclease
 gi|313646361|gb|EFS10823.1| exonuclease family protein [Shigella flexneri 2a str. 2457T]
 gi|332749041|gb|EGJ79464.1| exonuclease family protein [Shigella flexneri K-671]
 gi|332749309|gb|EGJ79730.1| exonuclease family protein [Shigella flexneri 4343-70]
 gi|332761883|gb|EGJ92157.1| exonuclease family protein [Shigella flexneri 2747-71]
 gi|332763212|gb|EGJ93455.1| oligoribonuclease monomer [Shigella flexneri 2930-71]
 gi|333009212|gb|EGK28668.1| exonuclease family protein [Shigella flexneri K-218]
 gi|333010312|gb|EGK29745.1| exonuclease family protein [Shigella flexneri VA-6]
 gi|333011977|gb|EGK31362.1| exonuclease family protein [Shigella flexneri K-304]
          Length = 181

 Score = 43.7 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 45

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 46  IAVHQ-SDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 105 CGNSIGQDRRFLFKYMPELEVYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 153

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 154 KQGTHQAMDD 163


>gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42]
 gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CFN 42]
          Length = 999

 Score = 43.7 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 81/252 (32%), Gaps = 51/252 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG----- 64
           I FD ETT LD+    ++        + +           P G K     + L       
Sbjct: 401 IAFDTETTSLDAMQAELVGFAMAIADNVA----------DPTGTKIRAAYVPLAHKDGVG 450

Query: 65  --ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             +     +++               +++   +A N K+D   +    +R   +      
Sbjct: 451 DLLGGGLAENQIPMRDALPRLKALLEDESVLKVAQNLKYDYLLM----KRYGVETKSFD- 505

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRY-----------------GITIS----HRSKHGA 160
             DT+ I+         + ++ L +++                  IT       R+ H A
Sbjct: 506 --DTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSGKANITFDLVDIDRATHYA 563

Query: 161 LLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL--LKRDKPLFTRITK 218
             D+ +   ++  +++       G  +  +R  +     +  +    +  D+ + +R++ 
Sbjct: 564 AEDADVTLRLW--LVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSG 621

Query: 219 EELDEHDKTIQT 230
            EL +    ++ 
Sbjct: 622 -ELAQGAARLED 632


>gi|50293371|ref|XP_449097.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528410|emb|CAG62067.1| unnamed protein product [Candida glabrata]
          Length = 1096

 Score = 43.7 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 21/128 (16%)

Query: 6   KMRKIVFDIETTGL-----DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPE 58
            +R + FDIE  G      + ++DR+I+I  V      K          P  R       
Sbjct: 313 PLRILSFDIECAGRPGIFPEPEHDRVIQIANVVNTVGEK---------KPFIRNVFTLDT 363

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA-EWIAHN-AKFDVGFINAELQRINKD 116
              + G     + D  +   +  ++ DF  + +    I +N   FD+ ++    + +  +
Sbjct: 364 CAPITG---SQVFDNETEEDLLRKWRDFIIQVDPDVIIGYNTTNFDIPYLLNRAKALKIE 420

Query: 117 PLDPSRII 124
                  +
Sbjct: 421 NFPYFGRL 428


>gi|38704238|ref|NP_313168.2| oligoribonuclease [Escherichia coli O157:H7 str. Sakai]
 gi|161367457|ref|NP_290795.2| oligoribonuclease [Escherichia coli O157:H7 EDL933]
 gi|168747976|ref|ZP_02772998.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4113]
 gi|168755351|ref|ZP_02780358.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4401]
 gi|168766441|ref|ZP_02791448.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4486]
 gi|168774540|ref|ZP_02799547.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4196]
 gi|168780594|ref|ZP_02805601.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4076]
 gi|168784799|ref|ZP_02809806.1| oligoribonuclease [Escherichia coli O157:H7 str. EC869]
 gi|168802329|ref|ZP_02827336.1| oligoribonuclease [Escherichia coli O157:H7 str. EC508]
 gi|195935954|ref|ZP_03081336.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4024]
 gi|208812669|ref|ZP_03253998.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4045]
 gi|208819030|ref|ZP_03259350.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4042]
 gi|209398620|ref|YP_002273707.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4115]
 gi|217325417|ref|ZP_03441501.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14588]
 gi|254796184|ref|YP_003081021.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14359]
 gi|261225285|ref|ZP_05939566.1| oligoribonuclease [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255463|ref|ZP_05947996.1| oligoribonuclease [Escherichia coli O157:H7 str. FRIK966]
 gi|291285577|ref|YP_003502395.1| Oligoribonuclease [Escherichia coli O55:H7 str. CB9615]
 gi|20138827|sp|Q8XDP0|ORN_ECO57 RecName: Full=Oligoribonuclease
 gi|187769887|gb|EDU33731.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4196]
 gi|188017565|gb|EDU55687.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4113]
 gi|189001658|gb|EDU70644.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4076]
 gi|189357409|gb|EDU75828.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4401]
 gi|189363946|gb|EDU82365.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4486]
 gi|189374804|gb|EDU93220.1| oligoribonuclease [Escherichia coli O157:H7 str. EC869]
 gi|189375661|gb|EDU94077.1| oligoribonuclease [Escherichia coli O157:H7 str. EC508]
 gi|208733946|gb|EDZ82633.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4045]
 gi|208739153|gb|EDZ86835.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4042]
 gi|209160020|gb|ACI37453.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4115]
 gi|217321638|gb|EEC30062.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14588]
 gi|254595584|gb|ACT74945.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14359]
 gi|290765450|gb|ADD59411.1| Oligoribonuclease [Escherichia coli O55:H7 str. CB9615]
 gi|320190703|gb|EFW65353.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli O157:H7 str.
           EC1212]
 gi|320638923|gb|EFX08569.1| oligoribonuclease [Escherichia coli O157:H7 str. G5101]
 gi|320644292|gb|EFX13357.1| oligoribonuclease [Escherichia coli O157:H- str. 493-89]
 gi|320649610|gb|EFX18134.1| oligoribonuclease [Escherichia coli O157:H- str. H 2687]
 gi|320655006|gb|EFX22967.1| oligoribonuclease [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660513|gb|EFX27974.1| oligoribonuclease [Escherichia coli O55:H7 str. USDA 5905]
 gi|320665782|gb|EFX32819.1| oligoribonuclease [Escherichia coli O157:H7 str. LSU-61]
 gi|326341785|gb|EGD65568.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli O157:H7 str.
           1125]
 gi|326346640|gb|EGD70374.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli O157:H7 str.
           1044]
          Length = 181

 Score = 43.7 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 45

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 46  IAVHQ-SDEQLALMDGWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 105 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 153

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 154 KQGTHQAMDD 163


>gi|109127811|ref|XP_001088611.1| PREDICTED: putative RNA exonuclease NEF-sp isoform 2 [Macaca
           mulatta]
 gi|109127813|ref|XP_001089058.1| PREDICTED: putative RNA exonuclease NEF-sp isoform 6 [Macaca
           mulatta]
 gi|109127817|ref|XP_001088838.1| PREDICTED: putative RNA exonuclease NEF-sp isoform 4 [Macaca
           mulatta]
          Length = 772

 Score = 43.7 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 62/208 (29%), Gaps = 30/208 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E   L SK   +  I  V        +      + P  +          GIT + L 
Sbjct: 231 LDCEMC-LTSKGRELTRISLVAEGGCCVMDE----LVKPENKILDYL-TSFSGITKKIL- 283

Query: 72  DKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             P       +  +        +A  + H+   D+  +                +IDT S
Sbjct: 284 -NPVTTKLKDVQRQLKALL-PPDAVLVGHSLDLDLRALKMI----------HPYVIDT-S 330

Query: 129 IARRKHPSSRNDLNSLCKR-YG--ITISHRSKHGALLDSHLLSDVYIKMMVGG----SQI 181
           +   +    R  L  L K   G  I    R  H A  D+ ++ ++    +  G    +++
Sbjct: 331 LLYVREQGRRFKLKFLAKAILGKDIQCPDRLGHDATEDARIILELAQYFLKYGPKKIAEL 390

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD 209
           N     N        ++      +L+  
Sbjct: 391 NLEALANHQEIQAAGQEPRNTTEILQHP 418


>gi|75077378|sp|Q4R9F7|REXON_MACFA RecName: Full=Putative RNA exonuclease NEF-sp
 gi|67967563|dbj|BAE00264.1| unnamed protein product [Macaca fascicularis]
          Length = 772

 Score = 43.7 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 62/208 (29%), Gaps = 30/208 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E   L SK   +  I  V        +      + P  +          GIT + L 
Sbjct: 231 LDCEMC-LTSKGRELTRISLVAEGGCCVMDE----LVKPENKILDYL-TSFSGITKKIL- 283

Query: 72  DKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             P       +  +        +A  + H+   D+  +                +IDT S
Sbjct: 284 -NPVTTKLKDVQRQLKALL-PPDAVLVGHSLDLDLRALKMI----------HPYVIDT-S 330

Query: 129 IARRKHPSSRNDLNSLCKR-YG--ITISHRSKHGALLDSHLLSDVYIKMMVGG----SQI 181
           +   +    R  L  L K   G  I    R  H A  D+ ++ ++    +  G    +++
Sbjct: 331 LLYVREQGRRFKLKFLAKAILGKDIQCPDRLGHDATEDARIILELAQYFLKYGPKKIAEL 390

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD 209
           N     N        ++      +L+  
Sbjct: 391 NLEALANHQEIQAAGQEPRNTTEILQHP 418


>gi|90022796|ref|YP_528623.1| hypothetical protein Sde_3154 [Saccharophagus degradans 2-40]
 gi|89952396|gb|ABD82411.1| conserved hypothetical protein [Saccharophagus degradans 2-40]
          Length = 187

 Score = 43.7 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 31/172 (18%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGITDE 68
           V D E +G  + +   IE+G V           +   + P    +     A +LHGI+  
Sbjct: 13  VLDFEASGF-ASDSYPIEVGVVTYE-----GERYCSLIEPQTHWHHWDKSAEQLHGISRV 66

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-----AKFDVGFINAELQRINKDP---LDP 120
            L +                + N     H        +D  ++          P     P
Sbjct: 67  QLHNAG------RSVRSVCEQLNDLLAGHQVYSDAWVWDQRWLITLYDAARMQPSYTFSP 120

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              I T    ++     ++   S+           ++H A  D++++   Y+
Sbjct: 121 IESIVTEQQLQKWDKEKQHVFKSV---------GGARHRASTDAYVIQQTYL 163


>gi|300956206|ref|ZP_07168519.1| hypothetical protein HMPREF9547_02048 [Escherichia coli MS 175-1]
 gi|300316960|gb|EFJ66744.1| hypothetical protein HMPREF9547_02048 [Escherichia coli MS 175-1]
          Length = 813

 Score = 43.7 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 62/190 (32%), Gaps = 35/190 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALKLHGITDE 68
            D+ET G +  +  II IGA+            F   +     G     + +K       
Sbjct: 635 IDLETMGKNP-DAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIK------W 687

Query: 69  FLK-----------DKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINAELQRI 113
           +LK           D+        +  +F +E++ E+      + A FD   +    +R 
Sbjct: 688 WLKQSREAQSAIMTDEIPLDDALLQLREFIDEKSGEFFVQVWGNGANFDNTILRRSYERQ 747

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD---- 169
                 P R  +   +          D ++   R  I      +H AL D+   +     
Sbjct: 748 GIP--CPWRYYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDARYQAKYVSV 801

Query: 170 VYIKMMVGGS 179
           ++ K++   +
Sbjct: 802 IWQKLIPSQA 811


>gi|296416291|ref|XP_002837814.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633697|emb|CAZ82005.1| unnamed protein product [Tuber melanosporum]
          Length = 487

 Score = 43.7 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 5/111 (4%)

Query: 75  SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH 134
                F  F     ++    + H+ K DV F+ A    +    +    +IDT  + +   
Sbjct: 282 RIGECFRHFDSHGEKRGIVLVGHDVKTDVDFLMAVGYNVGN--ISGLEVIDTTCMWKAVM 339

Query: 135 PSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
              ++  L S+     I    R  H A  D+       +KM   G  I  G
Sbjct: 340 GDFQSKGLGSMLHDLSIDF--RHLHNAGNDAAYTLQALVKMAEIGLPIEGG 388


>gi|283834783|ref|ZP_06354524.1| oligoribonuclease [Citrobacter youngae ATCC 29220]
 gi|291069029|gb|EFE07138.1| oligoribonuclease [Citrobacter youngae ATCC 29220]
          Length = 181

 Score = 43.7 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 57/190 (30%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 45

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +  +   ++     +  
Sbjct: 46  IAVHQ-SDEQLALMDDWNVRTHTGSGLVERVKASTMGDREAELATLAFLQEWVPAGKSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P        L        +
Sbjct: 105 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI------LA-----GFT 153

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 154 KQGTHQAMDD 163


>gi|218694774|ref|YP_002402441.1| putative exonuclease from phage origin [Escherichia coli 55989]
 gi|218351506|emb|CAU97215.1| putative exonuclease from phage origin [Escherichia coli 55989]
          Length = 823

 Score = 43.7 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 45/195 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAV--------------ELLD----YSKTNR-TFQVFLCPNG 52
            D+ET G +  +  +I IGA+              + +D        +R T + +L  + 
Sbjct: 645 IDLETMGKNP-DAPLISIGAIFFDPQTGDMGPEFSKTIDMDTAGGVIDRGTIKWWLKQSR 703

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINA 108
              S             L D+        +  +F +E + E+      + A FD   +  
Sbjct: 704 EAQSAI-----------LTDEIPLDDALLQLREFIDENSGEFFVQVWGNGANFDNTILRR 752

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             +R       P R  +   +          D ++   R  I      +H AL D+   +
Sbjct: 753 SYERQGIP--CPWRYYNDRDVRTIVELGKAMDFDA---RAAIPFEGE-RHNALDDARYQA 806

Query: 169 D----VYIKMMVGGS 179
                ++ K++   +
Sbjct: 807 KYVSTIWQKLIPNQA 821


>gi|322691727|ref|YP_004221297.1| oligoribonuclease [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456583|dbj|BAJ67205.1| oligoribonuclease [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 216

 Score = 43.7 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 23/169 (13%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP---EALKL 62
           R I  D E TGLD    D ++E+  V    D +  +      + P+ +  +       ++
Sbjct: 16  RLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSEKAVNHMNDFVRQM 75

Query: 63  H---GITDEF---LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           H   G+ +E+   L    +   +      F +E     +A N    D  F++  +  +  
Sbjct: 76  HTRSGLINEWENGLSLAEAEQKVTEYVLRFTSEGVRPLLAGNTIGSDKKFLDHYMPNLMS 135

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                S  + T   +ARR +P            Y         H AL D
Sbjct: 136 HLHYRSVDVSTFKELARRWYP----------AVYENRPPKNGGHRALAD 174


>gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
 gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
          Length = 902

 Score = 43.7 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 64/200 (32%), Gaps = 54/200 (27%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +    +   FD ETT  ++   +++ +                  + P+     P   
Sbjct: 317 MKKLADAKVFAFDTETTDFNAIQAKLVGV---------------SFAVSPHEAAYVPLGH 361

Query: 61  KLHGITDEFLKDKPSF---SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              G         P+      +  E      + N   I  N K+D   +        +  
Sbjct: 362 DYTG--------APAQLDKEEVLRELKPLLEDPNKTIICQNLKYDAEVL------AKEGL 407

Query: 118 LDPSRIIDTLSIARRKHPSS-RNDLNSLCKRY-----------------GITISHRSKHG 159
              ++  DTL  +   + SS R+DLN+L  +Y                  I+ +H +   
Sbjct: 408 TIRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDK 467

Query: 160 ALL----DSHLLSDVYIKMM 175
           A      D+ +   ++ K+M
Sbjct: 468 ATAYAAEDADVTLQLHHKLM 487


>gi|322831149|ref|YP_004211176.1| Exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602]
 gi|321166350|gb|ADW72049.1| Exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602]
          Length = 184

 Score = 43.7 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 57/177 (32%), Gaps = 29/177 (16%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRKN 55
           +  N    I  D+E TGLD + DRIIEI  +    +             Q          
Sbjct: 1   MASNDSNLIWIDLEMTGLDPERDRIIEIATLVTDAHLNILAEGPVMAVHQS--DAQLALM 58

Query: 56  SPEALKLH---GITDEFLKDKPSFSSIFSE-----FWDFFNEQNAEWIAHNAKFDVGFIN 107
               ++ H   G+ D  +K  P   +   +       ++     +    ++   D  F+ 
Sbjct: 59  DDWNVRTHTGSGLVDR-VKASPFDDNAAQQKTIEFLREWVPAGKSPICGNSVGQDRRFLF 117

Query: 108 AELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  + +        + TL  +ARR  P        L          ++ H AL D
Sbjct: 118 KYMPELEEYFHYRYLDVSTLKELARRWKP------EVLA-----GFKKQNTHQALDD 163


>gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1016

 Score = 43.7 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 47/250 (18%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLD-----YSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + FD ETT LD+    ++        +      +K    +   +  NG  +         
Sbjct: 418 VAFDTETTSLDAMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVGDLLGGGL--- 474

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                 +++       +       +++   +A N K+D   +    +R   +        
Sbjct: 475 -----AENQIPMGDALARLKALLEDESILKVAQNLKYDYLLM----KRYGIETRSFD--- 522

Query: 125 DTLSIARRKHPS-SRNDLNSLCKRY-----------------GITIS----HRSKHGALL 162
           DT+ I+         + ++ L +++                  +T       R+ H A  
Sbjct: 523 DTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSGKANVTFDLVDIDRATHYAAE 582

Query: 163 DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL--LKRDKPLFTRITKEE 220
           D+ +   ++  +++       G  +  +R  +     +  +    +  D+ + +R++  E
Sbjct: 583 DADVTLRLW--LVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSG-E 639

Query: 221 LDEHDKTIQT 230
           L +    ++ 
Sbjct: 640 LAQSAARLED 649


>gi|38638673|ref|NP_944374.1| gp66 [Burkholderia phage Bcep1]
 gi|34486055|gb|AAQ73412.1| gp66 [Burkholderia phage Bcep1]
          Length = 655

 Score = 43.7 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 49/149 (32%), Gaps = 27/149 (18%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D ET    S  D + E G    LD   T      F  P             G++ 
Sbjct: 4   RLLFLDFET---SSHTD-LTEHGLGRYLDDPSTRAYCFTFRLP-------------GMST 46

Query: 68  EFLKD--KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
             L +  +P    I            + ++AHNA FD    N  L+R       P   I 
Sbjct: 47  ADLWEVGQPVPKQIIGHL------NGSPFVAHNAPFDFWIWNTVLRRQRGYHDLPELQIG 100

Query: 126 TLSI--ARRKHPSSRNDLNSLCKRYGITI 152
            +    AR ++      L   C+  G+ +
Sbjct: 101 QVRCSAARARYNGLPGSLAGACEALGLPV 129


>gi|325499700|gb|EGC97559.1| hypothetical protein ECD227_3797 [Escherichia fergusonii ECD227]
          Length = 185

 Score = 43.7 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 5   MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 49

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 50  IAVHQ-SDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 108

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 109 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 157

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 158 KQGTHQAMDD 167


>gi|123479827|ref|XP_001323070.1| exonuclease family protein [Trichomonas vaginalis G3]
 gi|121905927|gb|EAY10847.1| exonuclease family protein [Trichomonas vaginalis G3]
          Length = 516

 Score = 43.7 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 85/239 (35%), Gaps = 34/239 (14%)

Query: 20  DSKNDRIIEI--GAVELLDYSKTNR----------TFQVFLCPNGRKNSPEALKLHGITD 67
           +     II I    V      +  R                 P       +  +  G+T+
Sbjct: 199 NPNTRDIISIDCEMVYTKKGGEVARLSVTDKSGNVVMDQLFKPTEEVIDYK-TQFSGLTE 257

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT- 126
           E L +  +      ++      ++   + H+ + D   +           L   + +DT 
Sbjct: 258 EKLSNVTATPDEAVKYLSQVASKSTIIVGHSLENDFRALK----------LIHLKCVDTS 307

Query: 127 LSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
           +      +P+ +  L S+ K+Y       S+ + H ++ D+    ++ +K+    +  + 
Sbjct: 308 VIYPNDANPNKKPSLISIYKKYINKPFRNSNDNGHDSIEDASAAMEL-VKLATREAVSSV 366

Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPL------FTRITKEELDEHDKTIQTLGKNAI 236
             K     F  E   +   +  ++R + +        ++T+ + + ++K I+++ +N +
Sbjct: 367 QEKPRTPDFLSEMLISHEKLCFIERKQKVEFEADFTIKVTENDQETYEKLIESIPENDL 425


>gi|73994933|ref|XP_543348.2| PREDICTED: similar to DNA polymerase epsilon catalytic subunit
           [Canis familiaris]
          Length = 2273

 Score = 43.7 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 265 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDVEDFEFTPKPEYEG- 323

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKDPL-- 118
                  + ++P    +   ++D+  E +    + +N   FD  F+ A            
Sbjct: 324 ----PFCVFNEPDEVHLIQRWFDYVQEMKPTIMVTYNGDFFDWPFVEARAAVHGLSMYQE 379

Query: 119 -------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 380 IGFQKDSQGEYKASQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 439

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 440 MATEQPQTLATYSVSDAVATYYLYMKYV 467


>gi|317120979|ref|YP_004100982.1| 3'-5' exonuclease, PolB [Thermaerobacter marianensis DSM 12885]
 gi|315590959|gb|ADU50255.1| 3'-5' exonuclease, PolB [Thermaerobacter marianensis DSM 12885]
          Length = 251

 Score = 43.3 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 55/183 (30%), Gaps = 33/183 (18%)

Query: 19  LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSS 78
           L     R++ I      +           +       S    +  G+  +    + S   
Sbjct: 47  LHPGTGRVVAIALWRPYEDRGGV-----LVADPSATESRW-TRFAGVDGDAQIYRGSERD 100

Query: 79  IFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP-------SRIIDTLSIA 130
           I  EFW + ++     I +N + FD  F+      +   P           +    L+  
Sbjct: 101 ILVEFWRYVSQHAGTLITYNGRAFDGPFLMIRSAILGVTPTRNLVPYRYSFQDHCDLAEV 160

Query: 131 RRKHP-SSRNDLNSLCKRYGITISHR--------SKHGA----------LLDSHLLSDVY 171
              H    RN     C ++GI    +        + + A          L D+   +++Y
Sbjct: 161 LSFHGARQRNSFLFWCHQFGIPSPKQEMDGAAVGAAYRAGRIDDIARYCLADARATAELY 220

Query: 172 IKM 174
            ++
Sbjct: 221 RRL 223


>gi|300957822|ref|ZP_07170001.1| exonuclease [Escherichia coli MS 175-1]
 gi|300315482|gb|EFJ65266.1| exonuclease [Escherichia coli MS 175-1]
          Length = 199

 Score = 43.3 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 19  MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 63

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 64  IAVHQ-SDEQLALMDDWNVRTHTSSGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 122

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 123 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 171

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 172 KQGTHQAMDD 181


>gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126]
 gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126]
          Length = 936

 Score = 43.3 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETT L+  +  ++ +              F           + EA  +      F  
Sbjct: 367 FDTETTDLEPTDAELVGLA-------------FSY--------VAGEAYYV-----PFPA 400

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D+     I  EF +    ++   I  N K+D+  +     R+        ++ DT+    
Sbjct: 401 DQKEAQKIADEFKEVLENEDITKIGQNLKYDIQVMRNYGVRV------QGKMFDTMLAHY 454

Query: 132 RKHPSSRNDLNSLCKRY 148
              P +R++++ + + Y
Sbjct: 455 LLDPETRHNMDVMAENY 471


>gi|291528936|emb|CBK94522.1| DNA polymerase family B, exonuclease domain [Eubacterium rectale
           M104/1]
          Length = 365

 Score = 43.3 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 35/159 (22%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++N M    FDIETTG       +  IG    + +    ++ F   +          A  
Sbjct: 22  KENTM---FFDIETTGFSPVKAIVYMIGCARRIKNRIVIDQYFAESVDDEAAVIEAFAGS 78

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINK-DPLD 119
           L G                           +  I+ N   FD+ F+  + ++  + DP  
Sbjct: 79  LSG--------------------------CSTIISFNGVGFDIPFLKNKYKKYKQEDPFC 112

Query: 120 PSRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHR 155
             +I+D    LS  +           S+    GI    +
Sbjct: 113 NVQILDIFKELSPIKPLLCLENYKQKSIEAFLGIDREDK 151


>gi|163782874|ref|ZP_02177870.1| hypothetical protein HG1285_16101 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881995|gb|EDP75503.1| hypothetical protein HG1285_16101 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 298

 Score = 43.3 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 73/235 (31%), Gaps = 69/235 (29%)

Query: 7   MRKIVFDIETT----GLDSKNDR---------------------------IIEIGAVELL 35
           MR + FDIET     GL  ++ +                           ++ +    L+
Sbjct: 1   MRVLAFDIETVPDLNGLSYRDYQYLRYRGRKDKSEEEVRQEFSLNPFTLFVVSVSG-TLI 59

Query: 36  DYSKTNRTFQVFL-CPNGRKNSPEA---------LKLHGITDEFLKDKPS--FSSIFSEF 83
           +  +    F  ++   + ++   E          ++   I  +F++ K       +   F
Sbjct: 60  ENGEIGEGFVFYVSNLSSKEREKEVFYSEGSSVRVRYTPIRADFVEGKLYYLEEEVLKRF 119

Query: 84  WDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-----DPSRIIDTLSIARRKHPSS 137
           W+   + +   ++ N   FD   +         D       D S  +D +          
Sbjct: 120 WEEVGKVD-RLVSFNGYSFDGYVLKVRSMLHGLDMPESFLRDRSFHVDLMHFLSNGEREK 178

Query: 138 RNDLNSLCKRYGITISHRSKHG---------------ALL---DSHLLSDVYIKM 174
           R   + +C+++G+        G               AL    DS  L+ +Y K+
Sbjct: 179 RFRFDFVCRKFGVHSPKDIIDGSKVAEEFYKGSYETIALYNLKDSLALAQLYTKL 233


>gi|148688080|gb|EDL20027.1| polymerase (DNA directed), epsilon [Mus musculus]
          Length = 1947

 Score = 43.3 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 272 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 330

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKDPL-- 118
                  + ++P    +   +++   E +    + +N   FD  F+ A            
Sbjct: 331 ----PFCVFNEPDEVHLIQRWFEHIQETKPTIMVTYNGDFFDWPFVEARAAIHGLSMYQE 386

Query: 119 -------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 387 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 446

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 447 MATEQPQTLATYSVSDAVATYYLYMKYV 474


>gi|254516802|ref|ZP_05128860.1| oligoribonuclease [gamma proteobacterium NOR5-3]
 gi|219674307|gb|EED30675.1| oligoribonuclease [gamma proteobacterium NOR5-3]
          Length = 184

 Score = 43.3 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 52/177 (29%), Gaps = 29/177 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRK 54
           MI  N+   +  D+E TGL  + DR+IEI  +                  Q         
Sbjct: 1   MI--NEQNLVWVDLEMTGLVPETDRVIEIATIVTDSDLNTLAEGPVIAIHQS--DATLAA 56

Query: 55  NSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFIN 107
                   H   G+ D                 +F  +      +    ++   D  F+ 
Sbjct: 57  MDEWNTTHHGSSGLCDRVRASTIDEQEAARLTIEFLKDWVPAGASPMCGNSICQDRRFMA 116

Query: 108 AELQRINKDPLDPSRIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             L  + +     +  + TL I A+R  P     L             R+ H AL D
Sbjct: 117 RHLPELERYFHYRNLDVSTLKILAQRWRPDVAASLQK-----------RAVHLALED 162


>gi|330984568|gb|EGH82671.1| oligoribonuclease [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 178

 Score = 43.3 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 56/180 (31%), Gaps = 39/180 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNG----- 52
            +NK   I  D+E TGLD   D IIE+  +       T+           +  +      
Sbjct: 1   MQNKQNLIWIDLEMTGLDPDIDVIIEMATI------ITDSELNTLAEGPVIAVHQSDETL 54

Query: 53  RKNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGF 105
            K      + H   G+T    +   S +   +   +F      E+++    ++   D  F
Sbjct: 55  AKMDEWNTRQHGGSGLTQRVRESTISMAEAEAHTLEFIKLWVPERSSPICGNSICQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGALLD 163
           +   +               TL           + L  L  R+   +     S H AL D
Sbjct: 115 LYRHMP--------------TLENWFHYRNLDVSTLKELAARWSPELKFKKGSTHLALDD 160


>gi|330997297|ref|ZP_08321150.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
 gi|329571092|gb|EGG52799.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
          Length = 923

 Score = 43.3 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 32/140 (22%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTG D  + +++ +      +        Q F  P  +    EA K       
Sbjct: 352 FLSLDTETTGTDPISAKLVGLSFSVKEN--------QAFYVPIPQD-PEEAQK------- 395

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                     I +EF   + ++    I  N K+D+  +      +  +        DT+ 
Sbjct: 396 ----------IVNEFKSVYEDERILKIGQNIKYDLMVLQNYGITLKGEIF------DTMI 439

Query: 129 IARRKHPSSRNDLNSLCKRY 148
                 P  R+ ++ L + Y
Sbjct: 440 AHYLLQPELRHGMDYLAEVY 459


>gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118]
 gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118]
          Length = 957

 Score = 43.3 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 46/152 (30%), Gaps = 36/152 (23%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETT LD    +I+ I                  + P      P A          
Sbjct: 383 VALDTETTSLDEMRAQIVGI---------------SFSVTPGEAAYIPLAHAY------- 420

Query: 70  LKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             D P     + + ++   +  + + + +  + K+D           N          DT
Sbjct: 421 -PDAPAQLPLADVLAKLKPWLQDASHKKLGQHVKYDRHVF------ANHGIEVQGYAHDT 473

Query: 127 LSIARRKHPSSRNDLNSLCKRY----GITISH 154
           +  +     +  + L SL +R+    GI+   
Sbjct: 474 MLQSYVLEVTKPHGLASLAERHLGRSGISFED 505


>gi|50309495|ref|XP_454756.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74690128|sp|Q6CMT3|REXO4_KLULA RecName: Full=RNA exonuclease 4
 gi|49643891|emb|CAG99843.1| KLLA0E17865p [Kluyveromyces lactis]
          Length = 294

 Score = 43.3 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 52/168 (30%), Gaps = 18/168 (10%)

Query: 8   RKIVFDIETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + +  D E  G+  D K+  +  +  V        +    +F+ P     +     + GI
Sbjct: 118 KYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLD----LFVRPK-EPVTDWRTWVSGI 172

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
               + +  +      +  +    +    + H+   D+  +     R         R   
Sbjct: 173 KPHHMANAVTQEDCQKQVSNVLKGR--ILVGHSVHHDLTALMLSHPR------RMIRDTS 224

Query: 126 TLSIARRKHPSSRN-DLNSLCKR-YGITISHRSKHGALLDSHLLSDVY 171
                R+K+   +   L  L K    + I     H ++ D+     +Y
Sbjct: 225 RHMPFRQKYSEGKTPSLKKLTKEILQLDIQDGE-HSSIEDARATMLLY 271


>gi|292897759|ref|YP_003537128.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
 gi|291197607|emb|CBJ44701.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
          Length = 929

 Score = 43.3 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 90/251 (35%), Gaps = 67/251 (26%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ET  LD+ +  II I             +F     P      P A   H   D   
Sbjct: 353 AFDLETDSLDTLSANIIGI-------------SFAT--APGEAAYLPVA---HDYLDA-- 392

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++   S + +       +  ++ +  N KFD G +    +R + + L      DT+  +
Sbjct: 393 PEQLDRSDVLARLKPLLEDPQSQKVGQNLKFDRGVL----KRYDIELL--GIRFDTMLES 446

Query: 131 RRKHP-SSRNDLNSLCKRY----------------------GITISHRSKHGALLDSHLL 167
              +  + R+D+++L  R+                       I +   + H A  D+ + 
Sbjct: 447 YALNSVAGRHDMDTLASRWLQHKTVTFEEIAGKGKNQLTFNQIALEQ-AAHYAAEDADVT 505

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF-------------T 214
             +++KM           +  ++ F + E   VP IS ++R+  L              +
Sbjct: 506 LQLHLKM----WPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQSILAVHSQELGS 561

Query: 215 RITKEELDEHD 225
           R+ + EL  H+
Sbjct: 562 RLAELELKAHE 572


>gi|213692662|ref|YP_002323248.1| hypothetical protein Blon_1795 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524123|gb|ACJ52870.1| hypothetical protein Blon_1795 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458813|dbj|BAJ69434.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 189

 Score = 43.3 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 16/125 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M RK +   +  DIETTG D ++D ++EIG     +D       ++  + P         
Sbjct: 1   MTRKTEA-LLWVDIETTGTDPRHDLMLEIGLRCTSMDAKTEYARYESVIKPGVLPTDRSF 59

Query: 60  LKLH------GITDEFLKDKPSF---SSIFSEFWDFFNEQNAEWIAH----NAK-FDVGF 105
              H      G+ DE +   P     + +     DF        + H    N   FD+ F
Sbjct: 60  AYAHRMHEENGLIDEVIDASPELCSTARVALAVIDFTQSMAETHVLHPAGTNMMGFDLPF 119

Query: 106 INAEL 110
           +   L
Sbjct: 120 LEHYL 124


>gi|327287480|ref|XP_003228457.1| PREDICTED: interferon-stimulated 20 kDa exonuclease-like 2-like
           [Anolis carolinensis]
          Length = 351

 Score = 43.3 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 48/169 (28%), Gaps = 16/169 (9%)

Query: 8   RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + +  D E  G      +  +   +V           +  ++CP     +    +  GI 
Sbjct: 176 KMVAIDCEMVGTGPGGRNSDLARCSVVSYHGDVI---YDKYICPPT-PITNYRTRWSGIR 231

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
              + +   F     E     + +    I H    D   +     +     L        
Sbjct: 232 RHHMNNAVPFKIAQKEILKLLSGK--IVIGHAIHNDFKALKYFHPK----SLTRDTSKIP 285

Query: 127 LSIARRKHPSSRN-DLNSLCK---RYGITISHRSKHGALLDSHLLSDVY 171
           L   +   P + +  L  L K      I +     H ++ D+    ++Y
Sbjct: 286 LLNRKAGFPENESASLKRLTKQLLHRDIQVGQNG-HSSVEDARATMELY 333


>gi|169237521|ref|YP_001690725.1| hypothetical protein OE5285R [Halobacterium salinarum R1]
 gi|167728748|emb|CAP15607.1| hypothetical protein OE5285R [Halobacterium salinarum R1]
          Length = 214

 Score = 43.3 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 31/153 (20%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FDIETT  D     I+ IG + + D +      +  +             LH   D   +
Sbjct: 16  FDIETTHYDPTEGEIVSIG-IAVHDRATAVERAETHI-------------LHRTVD---R 58

Query: 72  DKPSFSSIFSEFWDFFNEQNAE-WIAHNAK-FDVGFINAELQRIN----KDPLD-PSRII 124
           D+P+        +D  +E +AE  +  N + FD GF +  L        +  LD P+  +
Sbjct: 59  DEPALVQAA---YDILDESSAEFLVTFNGRDFDFGFCDDRLAHHGVQTSRPTLDTPTTHL 115

Query: 125 DTLSIARRKHPSSRN----DLNSLCKRYGITIS 153
           D L   R+     RN     L    + YG    
Sbjct: 116 DLLHDDRKAKADQRNEKWPSLEEALRAYGYETE 148


>gi|73669256|ref|YP_305271.1| hypothetical protein Mbar_A1749 [Methanosarcina barkeri str.
           Fusaro]
 gi|72396418|gb|AAZ70691.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 249

 Score = 43.3 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 50/148 (33%), Gaps = 42/148 (28%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
              DIETTGL    D I  +G        K ++T+   +                     
Sbjct: 88  AFVDIETTGLSKSRDEITIVGIY----NGKESKTYIKDIN-------------------- 123

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                    I  EF  +        ++ N A+FD+ FI +E   I  + L     ID + 
Sbjct: 124 ------LDDIVEEFSKY-----RLLVSFNGARFDLPFIKSEFPEIEFNQLH----IDLMY 168

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRS 156
             +R        L ++ K  GIT S  +
Sbjct: 169 PLKRI--GYSGGLKNIEKLLGITRSDGT 194


>gi|288956996|ref|YP_003447337.1| hypothetical protein AZL_001550 [Azospirillum sp. B510]
 gi|288909304|dbj|BAI70793.1| hypothetical protein AZL_001550 [Azospirillum sp. B510]
          Length = 163

 Score = 43.3 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 55/181 (30%), Gaps = 35/181 (19%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++   +    E T  D    R + + A+ +  +        + L P G     EA    
Sbjct: 13  ADRREHVAIHCEATSFDPGTARPVAVAAIRIRGFRILTGG-ALLLHPGGDIGVAEA---- 67

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR- 122
                                 F   +    + +   F V    A  +R+   PL   R 
Sbjct: 68  ----------------GDRLHAFIGGR--PLVGYYLDFSV----ALAERLTGRPLPDERA 105

Query: 123 IIDTLSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            + +L   R+    S+      L+SL +   + +      GA   +   +  ++++   G
Sbjct: 106 EVSSLYYDRKIRSLSKQAVDLRLDSLIRDLDLPVRPG---GAFGTALAAAMAWLRLTQDG 162

Query: 179 S 179
            
Sbjct: 163 R 163


>gi|192360456|ref|YP_001981170.1| hypothetical protein CJA_0650 [Cellvibrio japonicus Ueda107]
 gi|190686621|gb|ACE84299.1| conserved hypothetical protein [Cellvibrio japonicus Ueda107]
          Length = 181

 Score = 43.3 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 25/172 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGIT 66
             + DIE +G  + +   IEIGAV           +   + P       S +A ++HGI 
Sbjct: 7   PAIIDIEASGFGAHS-YPIEIGAVNAR-----GDRYCALIQPQPDWTHWSEQAQRIHGIA 60

Query: 67  DE-FLKDKPSFSSIFSEFWDFFNEQNA--EWIAHNAKFD--VGFINAELQRINKDPLDPS 121
            E  L        + +E   F        +   H++ +   + F        +  P++  
Sbjct: 61  RELALNSGKPARQVCAELNQFLGAITCYSDAWTHDSPWLTRLFFAGRTNPSFHLSPIELI 120

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
              D L              +   +R    ++ R +H A  D++L+   Y+ 
Sbjct: 121 ASEDQLLCW-----------DETKQRLQQQLAIR-RHRASGDAYLIQQTYLA 160


>gi|254518126|ref|ZP_05130182.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226911875|gb|EEH97076.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 532

 Score = 43.3 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 77/215 (35%), Gaps = 65/215 (30%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET  LD +  +I  I   + L+   T  +                       DE L
Sbjct: 8   FFDTETDSLDFRTGKIKLIAFSKGLNEVVTTTSV----------------------DERL 45

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K                N++N   + HNAKFDVGF  ++  R+N           TL +A
Sbjct: 46  K-------------SILNDKNIIKVFHNAKFDVGFFQSKGYRVNN-------YHCTLLMA 85

Query: 131 RRKHPSSRNDLNSLCKRY-GITISHRSKHG---------------ALLDSHLLSDVYIKM 174
           +      +  L +L K+Y  + +    +H                A+ D      +Y K+
Sbjct: 86  QVLG-EEKLSLKALAKKYLDVDMDKSMQHSDNWQETEITQEHIDYAVKDVEHTRALYYKL 144

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
           +      +   + N    ++ E++ +P I +L+ +
Sbjct: 145 L------DLLVENNLLTVYERERRALPAIVMLESN 173


>gi|328476755|gb|EGF47174.1| DNA polymerase III subunit alpha [Lactobacillus rhamnosus MTCC
           5462]
          Length = 356

 Score = 43.3 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 7/67 (10%)

Query: 9   KIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEALKLHGI 65
            +V D E     +  +++   EI  + +  + + ++TF +F   P G    P ++K+ GI
Sbjct: 275 YVVIDTE---FVADRNQLDLTEISLLRVRQH-QIDQTFDIFTQLPAGHHVMPFSVKITGI 330

Query: 66  TDEFLKD 72
           TD+ L++
Sbjct: 331 TDDLLEN 337


>gi|299145218|ref|ZP_07038286.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
 gi|298515709|gb|EFI39590.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
          Length = 949

 Score = 43.3 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 32/141 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ETTG +  +  ++ +      +        + F  P                D
Sbjct: 377 KILSLDTETTGTEPMDAELVGMSFSIAEN--------EAFYVPVPSDQ-----------D 417

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LK       I +EF   F  +N+  +  N K+D+  +      +           DT+
Sbjct: 418 EALK-------IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGATVKGPLF------DTM 464

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P  R+ ++ L + Y
Sbjct: 465 IAHYVLQPELRHGMDYLAEIY 485


>gi|260172660|ref|ZP_05759072.1| DNA polymerase I [Bacteroides sp. D2]
 gi|315920953|ref|ZP_07917193.1| DNA polymerase I [Bacteroides sp. D2]
 gi|313694828|gb|EFS31663.1| DNA polymerase I [Bacteroides sp. D2]
          Length = 949

 Score = 43.3 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 32/141 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ETTG +  +  ++ +      +        + F  P                D
Sbjct: 377 KILSLDTETTGTEPMDAELVGMSFSIAEN--------EAFYVPVPSDQ-----------D 417

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LK       I +EF   F  +N+  +  N K+D+  +      +           DT+
Sbjct: 418 EALK-------IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGATVKGPLF------DTM 464

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P  R+ ++ L + Y
Sbjct: 465 IAHYVLQPELRHGMDYLAEIY 485


>gi|29654538|ref|NP_820230.1| oligoribonuclease [Coxiella burnetii RSA 493]
 gi|153208846|ref|ZP_01947070.1| oligoribonuclease [Coxiella burnetii 'MSU Goat Q177']
 gi|154707040|ref|YP_001424673.1| oligoribonuclease [Coxiella burnetii Dugway 5J108-111]
 gi|161829936|ref|YP_001597086.1| oligoribonuclease [Coxiella burnetii RSA 331]
 gi|165921448|ref|ZP_02219636.1| oligoribonuclease [Coxiella burnetii RSA 334]
 gi|212212380|ref|YP_002303316.1| oligoribonuclease [Coxiella burnetii CbuG_Q212]
 gi|212218651|ref|YP_002305438.1| oligoribonuclease [Coxiella burnetii CbuK_Q154]
 gi|37999374|sp|Q83C93|ORN_COXBU RecName: Full=Oligoribonuclease
 gi|29541805|gb|AAO90744.1| oligoribonuclease [Coxiella burnetii RSA 493]
 gi|120575697|gb|EAX32321.1| oligoribonuclease [Coxiella burnetii 'MSU Goat Q177']
 gi|154356326|gb|ABS77788.1| oligoribonuclease [Coxiella burnetii Dugway 5J108-111]
 gi|161761803|gb|ABX77445.1| oligoribonuclease [Coxiella burnetii RSA 331]
 gi|165916763|gb|EDR35367.1| oligoribonuclease [Coxiella burnetii RSA 334]
 gi|212010790|gb|ACJ18171.1| oligoribonuclease [Coxiella burnetii CbuG_Q212]
 gi|212012913|gb|ACJ20293.1| oligoribonuclease [Coxiella burnetii CbuK_Q154]
          Length = 183

 Score = 43.3 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 59/152 (38%), Gaps = 27/152 (17%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEAL 60
           +  +    I  D+E TGLD + DRIIEI  +       TN    +    P    + P+ L
Sbjct: 1   MDFSDDNLIWLDLEMTGLDPERDRIIEIATI------VTNSHLDILAEGPAFAIHQPDKL 54

Query: 61  KLHGITD------------EFLKDKPSFSSIFSE-----FWD-FFNEQNAEWIAHNAKFD 102
            L  + +            E +K+  S   + +E     F + + +   +    ++   D
Sbjct: 55  -LTAMDNWNTSHHTASGLLERVKNS-SVDEVEAETLTLAFLEKYVSAGKSPLCGNSVCQD 112

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKH 134
             F++  + R+N+        + TL I  ++ 
Sbjct: 113 RRFLSRYMPRLNQFFHYRHLDVTTLKILAQRW 144


>gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CNPAF512]
          Length = 997

 Score = 43.3 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 83/247 (33%), Gaps = 41/247 (16%)

Query: 10  IVFDIETTGLDSKNDRII--EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + FD ETT LD+    ++   +   + +      +    ++ P   KN    L       
Sbjct: 399 VAFDTETTSLDAMQAELVGFSMAIADNVADPSGTKIRAAYV-PLAHKNGVGDLL----GG 453

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              +++               +++   +A N K+D   +    +R   +        DT+
Sbjct: 454 GLAENQVPMRDALPRLKALLEDESVLKVAQNLKYDYLLL----KRYGIETKSFD---DTM 506

Query: 128 SIARRKHPS-SRNDLNSLCKRY-----------------GITIS----HRSKHGALLDSH 165
            I+         + ++ L +++                  +T       R+ H A  D+ 
Sbjct: 507 LISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSGRANVTFDLVDIDRATHYAAEDAD 566

Query: 166 LLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL--LKRDKPLFTRITKEELDE 223
           +   ++  +++       G  +  +R  +     +  +    +  D+ + +R++  EL +
Sbjct: 567 VTLRLW--LVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSG-ELAQ 623

Query: 224 HDKTIQT 230
               ++ 
Sbjct: 624 GAARLED 630


>gi|195999862|ref|XP_002109799.1| hypothetical protein TRIADDRAFT_20882 [Trichoplax adhaerens]
 gi|190587923|gb|EDV27965.1| hypothetical protein TRIADDRAFT_20882 [Trichoplax adhaerens]
          Length = 149

 Score = 43.3 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 22/153 (14%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD-KPSFSSIFS 81
            D I  +  V+       +     ++ P+         +  GIT + L   K   + +  
Sbjct: 4   GDSIARVALVDEYYNVIVD----TYVLPDD-PIIDYRTRYSGITSDDLIGVKIRLNDV-H 57

Query: 82  EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-LSIARRKHPSSRND 140
           E       ++A  + H+ + D+  +      I          IDT +  +  K P+S+  
Sbjct: 58  ELLKAALPKDAILVGHSLENDLRAMRMIWNNI----------IDTSVQFSNPKSPTSKPS 107

Query: 141 LNSLCKRY---GITISHRSKHGALLDSHLLSDV 170
           L  L   Y    I   + + H  + D+     +
Sbjct: 108 LKFLASEYLQCQIQ-ENENGHSPVEDAITCMKL 139


>gi|254360517|ref|ZP_04976666.1| exoribonuclease II [Mannheimia haemolytica PHL213]
 gi|261492357|ref|ZP_05988919.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496143|ref|ZP_05992551.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|153091057|gb|EDN73062.1| exoribonuclease II [Mannheimia haemolytica PHL213]
 gi|261308245|gb|EEY09540.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261312040|gb|EEY13181.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 184

 Score = 43.3 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 27/176 (15%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRKN 55
           + +N+   I  D+E TGLD + +RIIEI  +                  Q        K 
Sbjct: 1   MAQNEQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVLAVHQT--DDLLEKM 58

Query: 56  SPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINA 108
           S   +K H   G+ +     K +  +   +  DF         +    ++   D  F+  
Sbjct: 59  SDWCVKTHTANGLIERVKASKLTERAAELQTLDFLKRWVPKGASPICGNSIAQDKRFLYK 118

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  +          + TL  +ARR  P     L+          S  + H AL D
Sbjct: 119 YMPDLADYFHYRHLDVSTLKELARRWKPEI---LDK--------FSKGNTHLALDD 163


>gi|121595648|ref|YP_987544.1| oligoribonuclease [Acidovorax sp. JS42]
 gi|166215746|sp|A1WB43|ORN_ACISJ RecName: Full=Oligoribonuclease
 gi|120607728|gb|ABM43468.1| Exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42]
          Length = 192

 Score = 43.3 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 50/173 (28%), Gaps = 21/173 (12%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY---SKTNRTFQVFLCPNGRK-NSPEA 59
           K+    +  D E +GL+ + +R++EI  V              F +              
Sbjct: 14  KSDQNLVWLDCEMSGLNPETERLLEIAVVVTSADLTLRVEGPVFAIHQADAVLDGMDAWN 73

Query: 60  LKLHG----ITD---EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
              HG    I       + +  +   + +    +  +       ++   D  F+   + +
Sbjct: 74  KGTHGRSGLIDKVRASTVTEADAERELLAFLSRYVPKGVVPMCGNSIGQDRRFLVKYMPK 133

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           +       +  + TL    ++                 +     +H AL D H
Sbjct: 134 LEAFFHYRNVDVSTLKELAKRWKPEAYS----------SFKKAQRHTALADVH 176


>gi|15242180|ref|NP_197617.1| CCR4-NOT transcription complex protein, putative [Arabidopsis
           thaliana]
 gi|75334084|sp|Q9FMS6|CAF1K_ARATH RecName: Full=Probable CCR4-associated factor 1 homolog 11
 gi|9757805|dbj|BAB08323.1| CCR4-associated factor-like protein [Arabidopsis thaliana]
 gi|17381058|gb|AAL36341.1| putative CCR4-associated factor [Arabidopsis thaliana]
 gi|25054979|gb|AAN71961.1| putative CCR4-associated factor [Arabidopsis thaliana]
 gi|332005618|gb|AED93001.1| putative CCR4-associated factor 1-11 [Arabidopsis thaliana]
          Length = 278

 Score = 43.3 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 17/141 (12%)

Query: 51  NGRKNSPEALKL---HGITDEFLKDKPSFSSIFSEFW---DFFNEQNAEWIAHNAKFDVG 104
               ++P++++L   HGI  E  + +   S  F+E          ++  W+  ++ +D G
Sbjct: 115 ERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFG 174

Query: 105 FINAELQRINKD-----------PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS 153
           ++   L R                    R+ D   I R         L+ + +   +  +
Sbjct: 175 YLVKILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRA 234

Query: 154 HRSKHGALLDSHLLSDVYIKM 174
               H A  DS L    + +M
Sbjct: 235 VGKCHQAGSDSLLTWQAFQRM 255


>gi|15640368|ref|NP_229995.1| oligoribonuclease [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121591589|ref|ZP_01678842.1| oligoribonuclease [Vibrio cholerae 2740-80]
 gi|121730775|ref|ZP_01682865.1| oligoribonuclease [Vibrio cholerae V52]
 gi|147673115|ref|YP_001218609.1| oligoribonuclease [Vibrio cholerae O395]
 gi|227080553|ref|YP_002809104.1| oligoribonuclease [Vibrio cholerae M66-2]
 gi|229506863|ref|ZP_04396371.1| oligoribonuclease [Vibrio cholerae BX 330286]
 gi|229508668|ref|ZP_04398162.1| oligoribonuclease [Vibrio cholerae B33]
 gi|229516050|ref|ZP_04405501.1| oligoribonuclease [Vibrio cholerae RC9]
 gi|229606377|ref|YP_002877025.1| oligoribonuclease [Vibrio cholerae MJ-1236]
 gi|254851651|ref|ZP_05241001.1| oligoribonuclease [Vibrio cholerae MO10]
 gi|255747141|ref|ZP_05421084.1| oligoribonuclease [Vibrio cholera CIRS 101]
 gi|262149017|ref|ZP_06028162.1| oligoribonuclease [Vibrio cholerae INDRE 91/1]
 gi|262166933|ref|ZP_06034653.1| oligoribonuclease [Vibrio cholerae RC27]
 gi|298501303|ref|ZP_07011100.1| oligoribonuclease [Vibrio cholerae MAK 757]
 gi|11133789|sp|Q9KV17|ORN_VIBCH RecName: Full=Oligoribonuclease
 gi|172047716|sp|A5F3M7|ORN_VIBC3 RecName: Full=Oligoribonuclease
 gi|9654757|gb|AAF93514.1| oligoribonuclease [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121546555|gb|EAX56757.1| oligoribonuclease [Vibrio cholerae 2740-80]
 gi|121627652|gb|EAX60322.1| oligoribonuclease [Vibrio cholerae V52]
 gi|146314998|gb|ABQ19537.1| oligoribonuclease [Vibrio cholerae O395]
 gi|227008441|gb|ACP04653.1| oligoribonuclease [Vibrio cholerae M66-2]
 gi|227012197|gb|ACP08407.1| oligoribonuclease [Vibrio cholerae O395]
 gi|229346953|gb|EEO11920.1| oligoribonuclease [Vibrio cholerae RC9]
 gi|229354303|gb|EEO19232.1| oligoribonuclease [Vibrio cholerae B33]
 gi|229355968|gb|EEO20887.1| oligoribonuclease [Vibrio cholerae BX 330286]
 gi|229369032|gb|ACQ59455.1| oligoribonuclease [Vibrio cholerae MJ-1236]
 gi|254847356|gb|EET25770.1| oligoribonuclease [Vibrio cholerae MO10]
 gi|255735190|gb|EET90592.1| oligoribonuclease [Vibrio cholera CIRS 101]
 gi|262024638|gb|EEY43319.1| oligoribonuclease [Vibrio cholerae RC27]
 gi|262031207|gb|EEY49826.1| oligoribonuclease [Vibrio cholerae INDRE 91/1]
 gi|297539994|gb|EFH76058.1| oligoribonuclease [Vibrio cholerae MAK 757]
          Length = 181

 Score = 43.3 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 33/179 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEA- 59
           +  +    I  D+E TGLD +  +IIE+  +       T+    +    P    + PE+ 
Sbjct: 1   MSFSDQNLIWIDLEMTGLDPEMHKIIEMATI------VTDSELNILAEGPVIAIHQPESE 54

Query: 60  --------LKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVG 104
                      H   G+     + + S      +   F      E  +    ++   D  
Sbjct: 55  LAKMDEWCTTTHTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRR 114

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   + R+  +     R ID  +I           L           S    H AL D
Sbjct: 115 FLYKHMPRL--EAYFHYRYIDVSTIKELTRRWQPEVLK--------EFSKTGSHLALDD 163


>gi|195438505|ref|XP_002067177.1| GK24851 [Drosophila willistoni]
 gi|194163262|gb|EDW78163.1| GK24851 [Drosophila willistoni]
          Length = 367

 Score = 43.3 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 24/161 (14%)

Query: 9   KIVFDIETTGL---DSKNDRIIEIGAVELLDYSKTN--------------RTFQVF--LC 49
             V D+ET  L   +     I E+           +              R       L 
Sbjct: 22  FAVIDLETCNLPALNYNRTSITELCIYAFDSGILKDNVADGDAPQILEAPRVIHKLNLLF 81

Query: 50  PNGRKNSPEALKLHGITDEFLKDKPSFSS-IFSEFWDFFN--EQNAEWIAHN-AKFDVGF 105
                  P+A +L G+ +  L+ +   +        +F          +AHN   FD   
Sbjct: 82  QPTMMVHPDAERLTGLNNYILERESRLNENSAQMIINFVRHLPGRICLVAHNGWSFDFPI 141

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCK 146
           +    ++++    +    +D+L  A  +    R   N+L K
Sbjct: 142 VRQAFEKLSLSFPEDMLCVDSLR-AFIEIDDKRYIENNLLK 181


>gi|238793401|ref|ZP_04637027.1| Oligoribonuclease [Yersinia intermedia ATCC 29909]
 gi|238727370|gb|EEQ18898.1| Oligoribonuclease [Yersinia intermedia ATCC 29909]
          Length = 181

 Score = 43.3 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 56/193 (29%), Gaps = 61/193 (31%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           + +N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MAENQNNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPV 45

Query: 60  LKLHGITDEFL-------------------------KDKPSFSSIFSEFWDFFNEQNAEW 94
           L +H  +DE L                          D  +          +     +  
Sbjct: 46  LAVHQ-SDEQLGLMDEWNVRTHTGSGLVERVKASPFSDSDAELQTIEFLKQWVPAGASPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI-- 152
             ++   D  F+   +  +  +     R +D             + L  L +R+   I  
Sbjct: 105 CGNSVGQDRRFLFRYMPEL--EAYFHYRYLDV------------STLKELARRWKPEILP 150

Query: 153 --SHRSKHGALLD 163
               ++ H AL D
Sbjct: 151 GFKKQNTHQALDD 163


>gi|192823947|ref|YP_001994593.1| gp46 [Mycobacterium phage Jasper]
 gi|190610542|gb|ACE80061.1| gp46 [Mycobacterium phage Jasper]
          Length = 609

 Score = 43.3 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 42/153 (27%)

Query: 4   KNKMRKIVFDIETTGLDSKND----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           ++ +R +  D ETTGL+   D    R+I+ G             ++ ++ P  R      
Sbjct: 32  RSNLRILGLDTETTGLNIYQDDFGIRLIQFG-----------NPWESWVLPVERGGV--- 77

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA----ELQRINK 115
                    F+      ++   +   F        + HNA FD+  I       ++++  
Sbjct: 78  ---------FVGAA---ATALQKVQRF--------VIHNAAFDLQVIERTLGVPMEQMWP 117

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
              D       +     K   + + L  L K Y
Sbjct: 118 KVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFY 150


>gi|323975494|gb|EGB70595.1| exonuclease [Escherichia coli TW10509]
          Length = 181

 Score = 43.3 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 45

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 46  IAVHQ-SDEQLALMDDWNVRTHTASGLVDRVKASTMGDREAELATLEFLKQWVPAGKSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 105 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 153

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 154 KQGTHQAMDD 163


>gi|292486521|ref|YP_003529387.1| DNA polymerase I [Erwinia amylovora CFBP1430]
 gi|291551934|emb|CBA18971.1| DNA polymerase I [Erwinia amylovora CFBP1430]
 gi|312170589|emb|CBX78852.1| DNA polymerase I [Erwinia amylovora ATCC BAA-2158]
          Length = 891

 Score = 43.3 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 88/251 (35%), Gaps = 67/251 (26%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ET  LD+ +  II I                    P      P A   H   D   
Sbjct: 315 AFDLETDSLDTLSANIIGISFATA---------------PGEAAYLPVA---HDYLDA-- 354

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++   S + +       +  ++ +  N KFD G +    +R + + L      DT+  +
Sbjct: 355 PEQLDRSDVLARLKPLLEDPQSQKVGQNLKFDRGVL----KRYDIELL--GIRFDTMLES 408

Query: 131 RRKHP-SSRNDLNSLCKRY----------------------GITISHRSKHGALLDSHLL 167
              +  + R+D+++L  R+                       I +   + H A  D+ + 
Sbjct: 409 YALNSVAGRHDMDTLASRWLQHKTVTFEEIAGKGKNQLTFNQIALEQ-AAHYAAEDADVT 467

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF-------------T 214
             +++KM           +  ++ F + E   VP IS ++R+  L              +
Sbjct: 468 LQLHLKM----WPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQSILAVHSQELGS 523

Query: 215 RITKEELDEHD 225
           R+ + EL  H+
Sbjct: 524 RLAELELKAHE 534


>gi|218551434|ref|YP_002385226.1| oligoribonuclease [Escherichia fergusonii ATCC 35469]
 gi|218358976|emb|CAQ91636.1| oligoribonuclease [Escherichia fergusonii ATCC 35469]
 gi|324112239|gb|EGC06217.1| exonuclease [Escherichia fergusonii B253]
          Length = 181

 Score = 43.3 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 45

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 46  IAVHQ-SDEQLAMMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 105 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 153

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 154 KQGTHQAMDD 163


>gi|89110885|ref|AP_004665.1| oligoribonuclease [Escherichia coli str. K-12 substr. W3110]
 gi|90111697|ref|NP_418586.4| oligoribonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|157155866|ref|YP_001465662.1| oligoribonuclease [Escherichia coli E24377A]
 gi|157163628|ref|YP_001460946.1| oligoribonuclease [Escherichia coli HS]
 gi|161486014|ref|NP_757097.2| oligoribonuclease [Escherichia coli CFT073]
 gi|161949984|ref|YP_405804.2| oligoribonuclease [Shigella dysenteriae Sd197]
 gi|161986383|ref|YP_313069.2| oligoribonuclease [Shigella sonnei Ss046]
 gi|170021825|ref|YP_001726779.1| oligoribonuclease [Escherichia coli ATCC 8739]
 gi|170083611|ref|YP_001732931.1| oligoribonuclease [Escherichia coli str. K-12 substr. DH10B]
 gi|170681955|ref|YP_001746560.1| oligoribonuclease [Escherichia coli SMS-3-5]
 gi|187730220|ref|YP_001882856.1| oligoribonuclease [Shigella boydii CDC 3083-94]
 gi|188495936|ref|ZP_03003206.1| oligoribonuclease [Escherichia coli 53638]
 gi|191165629|ref|ZP_03027469.1| oligoribonuclease [Escherichia coli B7A]
 gi|193065728|ref|ZP_03046792.1| oligoribonuclease [Escherichia coli E22]
 gi|194428928|ref|ZP_03061461.1| oligoribonuclease [Escherichia coli B171]
 gi|194437211|ref|ZP_03069309.1| oligoribonuclease [Escherichia coli 101-1]
 gi|215489509|ref|YP_002331940.1| oligoribonuclease [Escherichia coli O127:H6 str. E2348/69]
 gi|218556717|ref|YP_002389631.1| oligoribonuclease [Escherichia coli IAI1]
 gi|218561324|ref|YP_002394237.1| oligoribonuclease [Escherichia coli S88]
 gi|218692499|ref|YP_002400711.1| oligoribonuclease [Escherichia coli ED1a]
 gi|218697914|ref|YP_002405581.1| oligoribonuclease [Escherichia coli 55989]
 gi|218702862|ref|YP_002410491.1| oligoribonuclease [Escherichia coli IAI39]
 gi|218707776|ref|YP_002415295.1| oligoribonuclease [Escherichia coli UMN026]
 gi|229560203|ref|YP_672251.2| oligoribonuclease [Escherichia coli 536]
 gi|229775946|ref|YP_859834.2| oligoribonuclease [Escherichia coli APEC O1]
 gi|238903272|ref|YP_002929068.1| oligoribonuclease [Escherichia coli BW2952]
 gi|253775210|ref|YP_003038041.1| oligoribonuclease [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254164094|ref|YP_003047202.1| oligoribonuclease [Escherichia coli B str. REL606]
 gi|256019810|ref|ZP_05433675.1| oligoribonuclease [Shigella sp. D9]
 gi|256025100|ref|ZP_05438965.1| oligoribonuclease [Escherichia sp. 4_1_40B]
 gi|260846995|ref|YP_003224773.1| oligoribonuclease Orn [Escherichia coli O103:H2 str. 12009]
 gi|260858318|ref|YP_003232209.1| oligoribonuclease Orn [Escherichia coli O26:H11 str. 11368]
 gi|260870927|ref|YP_003237329.1| oligoribonuclease Orn [Escherichia coli O111:H- str. 11128]
 gi|293402792|ref|ZP_06646889.1| oligoribonuclease [Escherichia coli FVEC1412]
 gi|293407892|ref|ZP_06651732.1| oligoribonuclease [Escherichia coli B354]
 gi|293417668|ref|ZP_06660290.1| orn oligoribonuclease [Escherichia coli B185]
 gi|293476475|ref|ZP_06664883.1| orn [Escherichia coli B088]
 gi|297518431|ref|ZP_06936817.1| oligoribonuclease [Escherichia coli OP50]
 gi|298378322|ref|ZP_06988206.1| oligoribonuclease [Escherichia coli FVEC1302]
 gi|301027985|ref|ZP_07191269.1| exonuclease [Escherichia coli MS 196-1]
 gi|306815620|ref|ZP_07449769.1| oligoribonuclease [Escherichia coli NC101]
 gi|307140859|ref|ZP_07500215.1| oligoribonuclease [Escherichia coli H736]
 gi|307312001|ref|ZP_07591638.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W]
 gi|309787669|ref|ZP_07682280.1| exonuclease family protein [Shigella dysenteriae 1617]
 gi|312965838|ref|ZP_07780064.1| exonuclease family protein [Escherichia coli 2362-75]
 gi|312974028|ref|ZP_07788199.1| exonuclease family protein [Escherichia coli 1827-70]
 gi|331644912|ref|ZP_08346029.1| oligoribonuclease [Escherichia coli H736]
 gi|331650290|ref|ZP_08351362.1| oligoribonuclease [Escherichia coli M605]
 gi|331655993|ref|ZP_08356981.1| oligoribonuclease [Escherichia coli M718]
 gi|331660740|ref|ZP_08361672.1| oligoribonuclease [Escherichia coli TA206]
 gi|331671070|ref|ZP_08371903.1| oligoribonuclease [Escherichia coli TA271]
 gi|331671316|ref|ZP_08372114.1| oligoribonuclease [Escherichia coli TA280]
 gi|331680295|ref|ZP_08380954.1| oligoribonuclease [Escherichia coli H591]
 gi|331681184|ref|ZP_08381821.1| oligoribonuclease [Escherichia coli H299]
 gi|67469688|sp|P0A784|ORN_ECOLI RecName: Full=Oligoribonuclease
 gi|67469689|sp|P0A785|ORN_ECOL6 RecName: Full=Oligoribonuclease
 gi|166918637|sp|A7ZV33|ORN_ECO24 RecName: Full=Oligoribonuclease
 gi|166918638|sp|A8A7Q9|ORN_ECOHS RecName: Full=Oligoribonuclease
 gi|85676916|dbj|BAE78166.1| oligoribonuclease [Escherichia coli str. K12 substr. W3110]
 gi|87082382|gb|AAC77122.2| oligoribonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|157069308|gb|ABV08563.1| oligoribonuclease [Escherichia coli HS]
 gi|157077896|gb|ABV17604.1| oligoribonuclease [Escherichia coli E24377A]
 gi|169756753|gb|ACA79452.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli ATCC
           8739]
 gi|169891446|gb|ACB05153.1| oligoribonuclease [Escherichia coli str. K-12 substr. DH10B]
 gi|170519673|gb|ACB17851.1| oligoribonuclease [Escherichia coli SMS-3-5]
 gi|187427212|gb|ACD06486.1| oligoribonuclease [Shigella boydii CDC 3083-94]
 gi|188491135|gb|EDU66238.1| oligoribonuclease [Escherichia coli 53638]
 gi|190904324|gb|EDV64033.1| oligoribonuclease [Escherichia coli B7A]
 gi|192926597|gb|EDV81227.1| oligoribonuclease [Escherichia coli E22]
 gi|194412981|gb|EDX29270.1| oligoribonuclease [Escherichia coli B171]
 gi|194423767|gb|EDX39756.1| oligoribonuclease [Escherichia coli 101-1]
 gi|215267581|emb|CAS12036.1| oligoribonuclease [Escherichia coli O127:H6 str. E2348/69]
 gi|218354646|emb|CAV01632.1| oligoribonuclease [Escherichia coli 55989]
 gi|218363486|emb|CAR01140.1| oligoribonuclease [Escherichia coli IAI1]
 gi|218368093|emb|CAR05900.1| oligoribonuclease [Escherichia coli S88]
 gi|218372848|emb|CAR20727.1| oligoribonuclease [Escherichia coli IAI39]
 gi|218430063|emb|CAR10906.1| oligoribonuclease [Escherichia coli ED1a]
 gi|218434873|emb|CAR15811.1| oligoribonuclease [Escherichia coli UMN026]
 gi|222035935|emb|CAP78680.1| Oligoribonuclease [Escherichia coli LF82]
 gi|238861937|gb|ACR63935.1| oligoribonuclease [Escherichia coli BW2952]
 gi|242379688|emb|CAQ34511.1| oligoribonuclease monomer, subunit of oligoribonuclease
           [Escherichia coli BL21(DE3)]
 gi|253326254|gb|ACT30856.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975995|gb|ACT41666.1| oligoribonuclease [Escherichia coli B str. REL606]
 gi|253980151|gb|ACT45821.1| oligoribonuclease [Escherichia coli BL21(DE3)]
 gi|257756967|dbj|BAI28469.1| oligoribonuclease Orn [Escherichia coli O26:H11 str. 11368]
 gi|257762142|dbj|BAI33639.1| oligoribonuclease Orn [Escherichia coli O103:H2 str. 12009]
 gi|257767283|dbj|BAI38778.1| oligoribonuclease Orn [Escherichia coli O111:H- str. 11128]
 gi|260451008|gb|ACX41430.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli DH1]
 gi|284924347|emb|CBG37463.1| oligoribonuclease [Escherichia coli 042]
 gi|291320928|gb|EFE60370.1| orn [Escherichia coli B088]
 gi|291429707|gb|EFF02721.1| oligoribonuclease [Escherichia coli FVEC1412]
 gi|291430386|gb|EFF03384.1| orn oligoribonuclease [Escherichia coli B185]
 gi|291472143|gb|EFF14625.1| oligoribonuclease [Escherichia coli B354]
 gi|294490725|gb|ADE89481.1| oligoribonuclease [Escherichia coli IHE3034]
 gi|298280656|gb|EFI22157.1| oligoribonuclease [Escherichia coli FVEC1302]
 gi|299878895|gb|EFI87106.1| exonuclease [Escherichia coli MS 196-1]
 gi|305851282|gb|EFM51737.1| oligoribonuclease [Escherichia coli NC101]
 gi|306907808|gb|EFN38309.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W]
 gi|307556332|gb|ADN49107.1| oligoribonuclease [Escherichia coli ABU 83972]
 gi|307629236|gb|ADN73540.1| oligoribonuclease [Escherichia coli UM146]
 gi|308924419|gb|EFP69915.1| exonuclease family protein [Shigella dysenteriae 1617]
 gi|309704670|emb|CBJ04020.1| oligoribonuclease [Escherichia coli ETEC H10407]
 gi|310331562|gb|EFP98818.1| exonuclease family protein [Escherichia coli 1827-70]
 gi|312289081|gb|EFR16975.1| exonuclease family protein [Escherichia coli 2362-75]
 gi|312948814|gb|ADR29641.1| oligoribonuclease [Escherichia coli O83:H1 str. NRG 857C]
 gi|315063479|gb|ADT77806.1| oligoribonuclease [Escherichia coli W]
 gi|315138719|dbj|BAJ45878.1| oligoribonuclease [Escherichia coli DH1]
 gi|320173681|gb|EFW48871.1| 3'-to-5' oligoribonuclease (orn) [Shigella dysenteriae CDC 74-1112]
 gi|320193545|gb|EFW68182.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli WV_060327]
 gi|323156018|gb|EFZ42180.1| exonuclease family protein [Escherichia coli EPECa14]
 gi|323166646|gb|EFZ52404.1| exonuclease family protein [Shigella sonnei 53G]
 gi|323171596|gb|EFZ57242.1| exonuclease family protein [Escherichia coli LT-68]
 gi|323176077|gb|EFZ61669.1| exonuclease family protein [Escherichia coli 1180]
 gi|323182271|gb|EFZ67681.1| exonuclease family protein [Escherichia coli 1357]
 gi|323189956|gb|EFZ75234.1| exonuclease family protein [Escherichia coli RN587/1]
 gi|323380442|gb|ADX52710.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli KO11]
 gi|323935480|gb|EGB31818.1| exonuclease [Escherichia coli E1520]
 gi|323940084|gb|EGB36278.1| exonuclease [Escherichia coli E482]
 gi|323946101|gb|EGB42137.1| exonuclease [Escherichia coli H120]
 gi|323950766|gb|EGB46644.1| exonuclease [Escherichia coli H252]
 gi|323955595|gb|EGB51358.1| exonuclease [Escherichia coli H263]
 gi|323960351|gb|EGB55990.1| exonuclease [Escherichia coli H489]
 gi|323965551|gb|EGB61005.1| exonuclease [Escherichia coli M863]
 gi|323970580|gb|EGB65839.1| exonuclease [Escherichia coli TA007]
 gi|324118730|gb|EGC12622.1| exonuclease [Escherichia coli E1167]
 gi|327250105|gb|EGE61824.1| exonuclease family protein [Escherichia coli STEC_7v]
 gi|330908507|gb|EGH37026.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli AA86]
 gi|331035887|gb|EGI08125.1| oligoribonuclease [Escherichia coli H736]
 gi|331040684|gb|EGI12842.1| oligoribonuclease [Escherichia coli M605]
 gi|331046347|gb|EGI18437.1| oligoribonuclease [Escherichia coli M718]
 gi|331051782|gb|EGI23821.1| oligoribonuclease [Escherichia coli TA206]
 gi|331061659|gb|EGI33585.1| oligoribonuclease [Escherichia coli TA271]
 gi|331071161|gb|EGI42518.1| oligoribonuclease [Escherichia coli TA280]
 gi|331071758|gb|EGI43094.1| oligoribonuclease [Escherichia coli H591]
 gi|331081405|gb|EGI52566.1| oligoribonuclease [Escherichia coli H299]
 gi|332346241|gb|AEE59575.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 181

 Score = 43.3 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 45

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 46  IAVHQ-SDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 105 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 153

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 154 KQGTHQAMDD 163


>gi|332528277|ref|ZP_08404282.1| oligoribonuclease [Hylemonella gracilis ATCC 19624]
 gi|332042297|gb|EGI78618.1| oligoribonuclease [Hylemonella gracilis ATCC 19624]
          Length = 195

 Score = 43.3 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 54/189 (28%), Gaps = 49/189 (25%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           ++K+    +  D E TGLD + +R+IEI  +                 PN        + 
Sbjct: 14  LKKSDQNLVWIDCEMTGLDPEKERLIEIAIIVTG--------------PNLEPRIEGPVM 59

Query: 62  LHG----ITDEF------------LKDKPSFSSIFSE---------FWDFFNEQNAEWIA 96
           +      I D+             L +K   S++  E            +  +       
Sbjct: 60  VIHQSDEILDKMDAWNKGTHGRSGLIEKVKASTLTEEEAEEQLLAFIKQYVPKSVTPMCG 119

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
           +    D  F+   + ++       +  + TL    ++                       
Sbjct: 120 NTISQDRRFLVKYMPKLEAWFHYRNLDVSTLKELAKRWRPEVYS----------AFKKAQ 169

Query: 157 KHGALLDSH 165
           KH AL D H
Sbjct: 170 KHTALADVH 178


>gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
 gi|22295063|dbj|BAC08891.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
          Length = 945

 Score = 43.3 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 27/140 (19%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + +D ETT L+ ++  ++ +G        +       +L P G K   E   L      
Sbjct: 357 PVAWDTETTALNPRDAALVGLGCCWGAAPDQV-----AYL-PLGHK---EGQNL------ 401

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                       +             +  NAKFD   +  +  ++         + DT+ 
Sbjct: 402 ------PLEETLAALRPILEGDRYPKVLQNAKFDRLVLRFQGIQL------RGVVFDTML 449

Query: 129 IARRKHPSSRNDLNSLCKRY 148
            +   +P + ++L  LC+RY
Sbjct: 450 ASYVINPEASHNLKDLCQRY 469


>gi|191173402|ref|ZP_03034931.1| oligoribonuclease [Escherichia coli F11]
 gi|190906378|gb|EDV65988.1| oligoribonuclease [Escherichia coli F11]
          Length = 181

 Score = 43.3 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 45

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 46  IAVHQ-SDEQLALMDDWNVRTHTACGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 105 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 153

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 154 KQGTHQAMDD 163


>gi|332266244|ref|XP_003282124.1| PREDICTED: interferon-stimulated 20 kDa exonuclease-like 2-like
           [Nomascus leucogenys]
          Length = 354

 Score = 43.3 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 23/186 (12%), Positives = 60/186 (32%), Gaps = 13/186 (6%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   K   +  +    +++Y+  +  +  ++ P          +  GI  
Sbjct: 179 KMVAIDCEMVGTGPKGH-VSSLARCSIVNYNG-DVLYDEYILPPCHIVDYR-TRWGGIRK 235

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +   F     +       +    + H    D   +     +        +  I  L
Sbjct: 236 QHMVNATPFKIAQGQILKILAGK--TVVGHAIHNDFKALQYFHPK---SLTRDTSHIPHL 290

Query: 128 SIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           +       ++   L  L K+     I +  +S H ++ D+    ++Y K++    + +  
Sbjct: 291 NQKTDCPENATISLKHLTKKLLNWDIQV-GKSGHSSVEDAQATMELY-KLVEVEWEEHLA 348

Query: 185 FKTNED 190
                D
Sbjct: 349 QNPPTD 354


>gi|330720662|gb|EGG98910.1| 3'-to-5' oligoribonuclease (orn) [gamma proteobacterium IMCC2047]
          Length = 182

 Score = 43.3 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 27/173 (15%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK----NSPEAL 60
           N    I  D+E TGL+  +D IIEI  +             VF      +          
Sbjct: 3   NADHLIWVDLEMTGLEPDHDTIIEIATIVTDSDLNVIAEGPVFAIHQSAETMAGMDEWNT 62

Query: 61  KLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             HG       + D  +  + + +   +    +     +    ++   D  F+   + ++
Sbjct: 63  NQHGGSGLTQRVLDSDVSMEQAEAETIAWLEQYVEAGKSPMCGNSIGQDRRFMVKYMPKL 122

Query: 114 NKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +     R +D  S+   ARR  P      + L       +     H AL D
Sbjct: 123 --EVFFHYRNLDVSSVKELARRWRP------DVLA-----GVKKNGSHLALDD 162


>gi|330843720|ref|XP_003293795.1| hypothetical protein DICPUDRAFT_84319 [Dictyostelium purpureum]
 gi|325075848|gb|EGC29690.1| hypothetical protein DICPUDRAFT_84319 [Dictyostelium purpureum]
          Length = 362

 Score = 43.3 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           + D ETTGL S N  IIE+     L+       F     P     +PE+ K++ +T + L
Sbjct: 281 ILDSETTGLTS-NAEIIELSC-ACLNG----EAFYRKSNPTI-PITPESTKINNLTSKDL 333

Query: 71  KDKPSFSSIFSEFW 84
                +  +   F 
Sbjct: 334 AGHQYWEKVEENFL 347


>gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
 gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
          Length = 948

 Score = 43.3 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 32/139 (23%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD ETTG+D+             L+      +F            P            
Sbjct: 376 VCFDTETTGIDA-------------LNAQLVGMSFSF--EKGKAFYVPFP---------- 410

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            +++     +  +F  FF  ++ E I  N K+D+  ++    +I           DT+  
Sbjct: 411 -ENQEDAQVLADKFKPFFESESIEKIGQNIKYDLKILSHYGVQIKGKLF------DTMIA 463

Query: 130 ARRKHPSSRNDLNSLCKRY 148
               +P  R++++ L + Y
Sbjct: 464 HYLINPDMRHNMDVLSETY 482


>gi|293368661|ref|ZP_06615268.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
 gi|292636303|gb|EFF54788.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
          Length = 949

 Score = 43.3 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 32/141 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ETTG +  +  ++ +      +        + F  P                D
Sbjct: 377 KILSLDTETTGTEPMDAELVGMSFSIAEN--------EAFYVPVPSDQ-----------D 417

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LK       I +EF   F  +N+  +  N K+D+  +      +           DT+
Sbjct: 418 EALK-------IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGATVKGPLF------DTM 464

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P  R+ ++ L + Y
Sbjct: 465 IAHYVLQPELRHGMDYLAEIY 485


>gi|237720620|ref|ZP_04551101.1| DNA polymerase I [Bacteroides sp. 2_2_4]
 gi|229450371|gb|EEO56162.1| DNA polymerase I [Bacteroides sp. 2_2_4]
          Length = 949

 Score = 43.3 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 32/141 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ETTG +  +  ++ +      +        + F  P                D
Sbjct: 377 KILSLDTETTGTEPMDAELVGMSFSIAEN--------EAFYVPVPSDQ-----------D 417

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LK       I +EF   F  +N+  +  N K+D+  +      +           DT+
Sbjct: 418 EALK-------IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGATVKGPLF------DTM 464

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P  R+ ++ L + Y
Sbjct: 465 IAHYVLQPELRHGMDYLAEIY 485


>gi|153853976|ref|ZP_01995309.1| hypothetical protein DORLON_01300 [Dorea longicatena DSM 13814]
 gi|149753358|gb|EDM63289.1| hypothetical protein DORLON_01300 [Dorea longicatena DSM 13814]
          Length = 265

 Score = 43.3 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 79/239 (33%), Gaps = 28/239 (11%)

Query: 10  IVFDIE--TT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
              D E  T+   G      +++ +G V      +    F  ++    + +     ++ G
Sbjct: 3   AFLDTEFLTSQVKGGPP--AKLVSVGFVVCGKNFEEVTRFHSYIYAEDKLHDRF-QEMTG 59

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I  + L   P +  +  E  +         + +    D   I  +L    KD    ++ I
Sbjct: 60  IERKDLLSAPDYELVMEEVAEQLEAWEVSRV-YVWGPDKYVIQRDLLEYRKDASKRTKKI 118

Query: 125 --DTLSIARRKHPSSRNDLNSLCKRYGI-------TISHRSKHGALLDSHLLSDVYIKM- 174
               L + +         L+   +  GI        +     H AL D+  L ++   + 
Sbjct: 119 VNRILRMIKDIEDIYSAKLD--LQSAGIGSLKILCGLGTEVSHNALDDAVDLKNIIKHID 176

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233
           + G S+          +  K+           +R +  +  +++E  ++    ++ LGK
Sbjct: 177 LEGCSEHML-------QIMKKYTAEKEVYYRQRRFREKWEDVSEEIQEKTLGLLKELGK 228


>gi|254443055|ref|ZP_05056531.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198257363|gb|EDY81671.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 596

 Score = 43.3 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 63/194 (32%), Gaps = 46/194 (23%)

Query: 67  DEFLKDKPSFSSIFSEFW----DFFNE---------QNAEWIAHNAKFDVGFINAELQRI 113
           D ++ D P F    + FW    +F             +  WI+HNA+FD       ++ +
Sbjct: 43  DAYVAD-PRFDCYLASFWGPHGNFVGHPSECPWEEFNDCVWISHNARFDRAVFFR-MKEL 100

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS-------------KHG- 159
              P          S A   +  +  +L    ++      +++              H  
Sbjct: 101 GIVPAHIMPREWHDSAALAVYLQAPRNLAGAAEKLLGEKPNKAIRDAMKGIQGGLLCHDK 160

Query: 160 -----ALLDSHLLSDVYI----------KMMVGGS--QINFGFKTNEDRFFKEEKKTVPN 202
                AL D+ L  +++I          +++   +  Q  +G   ++ R  +  +     
Sbjct: 161 AVLDYALDDARLACELWISHCDKWPKKERLLSQLTIEQGEYGVHLDQKRIREGIETLTQV 220

Query: 203 ISLLKRDKPLFTRI 216
                 + P F R+
Sbjct: 221 RDDEATNLPWFPRL 234


>gi|126696667|ref|YP_001091553.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
 gi|126543710|gb|ABO17952.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
          Length = 976

 Score = 43.3 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 24/147 (16%)

Query: 3   RKNKMRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R NK  +IV  D ET  L+  +  ++ IG     +         +F  P G +   E   
Sbjct: 375 RLNKTNQIVSLDTETNSLNPIDAELVGIGLCLGEEND------DLFYIPLGHQIKKE--- 425

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
               T   L    S   +FS+   +  +   E    N+KFD          +        
Sbjct: 426 ----TPNQL----SIEDVFSKLRTWIEDPKKEKALQNSKFDRQIFFNHGLDLKGVTF--- 474

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY 148
              DTL      +   ++ L+ +  R 
Sbjct: 475 ---DTLLADYLLNNQEKHGLSEISFRL 498


>gi|326427354|gb|EGD72924.1| oligoribonuclease [Salpingoeca sp. ATCC 50818]
          Length = 238

 Score = 43.3 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 53/167 (31%), Gaps = 20/167 (11%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL--CPNGRKNSPEALKLHGI 65
           R +  D+E +GLD   +RI+E+  +          +    +   P     S +       
Sbjct: 62  RMVWVDLEMSGLDVSRERILEMAMIITDADLNVVASSGTVVLHQPEHILESMDEWNTTHH 121

Query: 66  TDEFLKDKPS---------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           T   L ++              +     +   E+       +   D  F+   + R    
Sbjct: 122 TQSGLVERVRQSKLREWDVEDQMLKLLHEHCPEKRCPLAGSSVHVDRLFLLKYMPRF--T 179

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                RIID  S+       ++  L+S+        + R +H A  D
Sbjct: 180 DYLHYRIIDVSSVLELSRRWNKPVLDSM-------PAGRDRHRAEDD 219


>gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b]
 gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b]
          Length = 928

 Score = 43.3 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 82/247 (33%), Gaps = 59/247 (23%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ET  LD+ +  I+ +                  + P      P A   H   D   
Sbjct: 352 AFDLETDSLDTLSANIVGLAFA---------------VAPGEAAYLPVA---HDYLDA-- 391

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D+   +++ ++      +  A  +  N K+D G +       N D        DT+  +
Sbjct: 392 PDQLDRAAVLAQLKPLLEDSKAAKVGQNLKYDRGVLK------NYDIELNGIKYDTMLES 445

Query: 131 RRKHP-SSRNDLNSLCKRY----------------------GITISHRSKHGALLDSHLL 167
              +    ++D++SL  R+                       I I   + H A  D+ + 
Sbjct: 446 YCLNSVGGKHDMDSLAARWLNHKTVTFEEIAGKGKNQLTFNQIAIEQ-AGHYAAEDADVT 504

Query: 168 SDVYIKM---MVGGSQINFGFKTNEDRFFKEEKKTVPNISLL------KRDKPLFTRITK 218
             +++KM   +   +     F   E    K   +   N  L+      K  + L TR+ +
Sbjct: 505 LQLHLKMWPELEKEAGPKKVFTEIEMPLLKVISRVERNGVLIDQNILAKHSQELTTRLAE 564

Query: 219 EELDEHD 225
            E   HD
Sbjct: 565 LEQQAHD 571


>gi|328773880|gb|EGF83917.1| hypothetical protein BATDEDRAFT_33990 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 267

 Score = 43.3 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 9   KIVFDIETT-----GLDSKNDRIIEIGAVELLDY--SKTNRTFQVFLCPNGRK-NSPEAL 60
            +V DIE T     G D  +  +IE   +  +D    +T  TF+ +  P      +    
Sbjct: 81  YLVCDIEATCDSDSGFDFAS-EVIEFPVI-AIDGTTMETVSTFRRYCRPILHPTLTDFCK 138

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFF 87
           +L GIT E       F+ +F++F ++ 
Sbjct: 139 QLTGITQEQTDAADPFTVVFADFLEWM 165


>gi|168010065|ref|XP_001757725.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691001|gb|EDQ77365.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 182

 Score = 43.3 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 23/122 (18%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-------- 58
           M  +  D+  +GLD + DRI+EI  V      +  RTF+    P+   + PE        
Sbjct: 1   MPLVWIDLVMSGLDIEKDRILEIACVVT--DGRLERTFE---GPDIIVSQPEEILEGMDV 55

Query: 59  ALKLH----GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKF-DVGFINA 108
           + + H    G+ D       +      E   F             +A N+ + D+ F+N 
Sbjct: 56  SFREHHAASGLMDGVRASSVTEEEAEQEVLKFVRKYTRGNSGQPLLAGNSVYVDLRFLNK 115

Query: 109 EL 110
            +
Sbjct: 116 YM 117


>gi|238796040|ref|ZP_04639551.1| Oligoribonuclease [Yersinia mollaretii ATCC 43969]
 gi|238719985|gb|EEQ11790.1| Oligoribonuclease [Yersinia mollaretii ATCC 43969]
          Length = 181

 Score = 43.3 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 61/190 (32%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           + +N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MAENQNNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPV 45

Query: 60  LKLH------GITD-------------EFLKDKPSFSSIFSEF--WDFFNEQ----NAEW 94
           L +H      G+ D             E +K  P FS   +E    +F  +      +  
Sbjct: 46  LAVHQSDEQLGLMDEWNVRTHTGSGLVERVKASP-FSDHDAELQTIEFLKQWVPAGVSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P        L         
Sbjct: 105 CGNSVGQDRRFLFRYMPELEAYFHYRYLDVSTLKELARRWKPEI------LA-----GFK 153

Query: 154 HRSKHGALLD 163
            ++ H AL D
Sbjct: 154 KQNTHQALDD 163


>gi|238787531|ref|ZP_04631329.1| Oligoribonuclease [Yersinia frederiksenii ATCC 33641]
 gi|238724318|gb|EEQ15960.1| Oligoribonuclease [Yersinia frederiksenii ATCC 33641]
          Length = 181

 Score = 43.3 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 56/193 (29%), Gaps = 61/193 (31%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           + +N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MAENQNNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPV 45

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           L +H  +DE L                          D  +          +     +  
Sbjct: 46  LAVHQ-SDEQLALMDEWNVRTHTGSGLVERVKASPFNDHDAELQTIEFLQQWVPAGTSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI-- 152
             ++   D  F+   +  +  +     R +D             + L  L +R+   I  
Sbjct: 105 CGNSVGQDRRFLFRYMPEL--EAYFHYRYLDV------------STLKELARRWKPEILP 150

Query: 153 --SHRSKHGALLD 163
               ++ H AL D
Sbjct: 151 GFKKQNTHQALDD 163


>gi|153807182|ref|ZP_01959850.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185]
 gi|149130302|gb|EDM21512.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185]
          Length = 949

 Score = 43.3 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 32/141 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ETTG +  +  ++ +      +        + F  P       EALK      
Sbjct: 377 KILSLDTETTGTEPMDAELVGMSFSIAEN--------EAFYVPVPAD-QEEALK------ 421

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                      I +EF   F  +N+  +  N K+D+  +     ++           DT+
Sbjct: 422 -----------IVNEFRPVFENENSLKVGQNIKYDMIVLQNYGVQVKGPLF------DTM 464

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P  R+ ++ L + Y
Sbjct: 465 IAHYVLQPELRHGMDYLAEIY 485


>gi|296273188|ref|YP_003655819.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
 gi|296097362|gb|ADG93312.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
          Length = 900

 Score = 42.9 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 59/193 (30%), Gaps = 49/193 (25%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITD 67
            + FD ETT LD+K  +I+        + +        +L  P           ++ + +
Sbjct: 333 IVAFDTETTSLDTKIAKIVGFSFCFNENSAYYIPIAHSYLGAPEQVSIEDAKSAINKLNN 392

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                   F                  I  N K+D   I           ++ +   DT+
Sbjct: 393 --------FK----------------LIVQNFKYDFDIIKFNFD------IELNLFADTI 422

Query: 128 SIARRKHPSSRNDLNSLCKRY--------------GITISHRSKHGALL----DSHLLSD 169
            +A     SS+  L++L K Y              G   S      A      D+ +   
Sbjct: 423 ILAWLLDSSSKVGLDALAKNYFDHTMIAFKDVVKKGDDFSTVDISNACNYAAEDALMTYK 482

Query: 170 VYIKMMVGGSQIN 182
           +Y K++    + N
Sbjct: 483 IYFKLLEEFKKQN 495


>gi|194214443|ref|XP_001915746.1| PREDICTED: similar to DNA polymerase epsilon catalytic subunit A
           (DNA polymerase II subunit A) [Equus caballus]
          Length = 2320

 Score = 42.9 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 306 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 364

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKDPL-- 118
                  + ++P    +   +++   E +    + +N   FD  F+ A            
Sbjct: 365 ----PFCVFNEPDEVHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMYQE 420

Query: 119 -------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 421 IGFQKDNQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 480

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 481 MATEQPQTLATYSVSDAVATYYLYMKYV 508


>gi|169237523|ref|YP_001690727.1| hypothetical protein OE5289R [Halobacterium salinarum R1]
 gi|167728750|emb|CAP15609.1| hypothetical protein OE5289R [Halobacterium salinarum R1]
          Length = 478

 Score = 42.9 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 47/151 (31%), Gaps = 37/151 (24%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  DIET GL+     +  IG V       +   F            P        TD 
Sbjct: 271 PIFIDIETDGLNPT--MVWLIGVVT----RASGDRF-----------IPFIE-----TDP 308

Query: 69  FLKDKPSFSSIFSEFWDFFNE--QNAEWIAHN-AKFDVGFINAELQRI---NKDPLDPSR 122
              +KP  ++    F D+  E  +N   +A+N  +FD   I   +      + +    + 
Sbjct: 309 ---EKP--AAALRAFMDWLAEFGRNRPIVAYNGWQFDFPVIEEHVAEHCPEHNETWANTA 363

Query: 123 IIDTLSIA----RRKHPSSRNDLNSLCKRYG 149
             D    A        P   N L  +    G
Sbjct: 364 KFDLYHWAVTKNNALLPGITNKLADVASALG 394


>gi|150021780|ref|YP_001307134.1| DNA polymerase I [Thermosipho melanesiensis BI429]
 gi|149794301|gb|ABR31749.1| DNA polymerase I [Thermosipho melanesiensis BI429]
          Length = 890

 Score = 42.9 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 30/147 (20%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R ++++    D ETT LD  + +++ +                              +  
Sbjct: 313 RIDEVKTFSIDTETTSLDPFSAKLVGVSISTNEG--------------EAYYIPISHVSE 358

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           + +T E          +     +    +    +  N KFD             +P  P  
Sbjct: 359 NNLTKEI---------VLKFLKEILECERYNIVGQNLKFDYKVFMVN----GIEPQIP-- 403

Query: 123 IIDTLSIARRKHPSS-RNDLNSLCKRY 148
             DT+  A   +P   R +L  L  +Y
Sbjct: 404 HFDTMVAAYLINPEERRYNLEELALKY 430


>gi|327284267|ref|XP_003226860.1| PREDICTED: DNA polymerase epsilon catalytic subunit A-like [Anolis
           carolinensis]
          Length = 2456

 Score = 42.9 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 67/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 442 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 500

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAK-FDVGFINAELQRINKD---- 116
                  + ++P  + +   +++   + +    + +N   FD  F+              
Sbjct: 501 ----PFCVFNEPDEAHLIQRWFEHVQDTKPTIMVTYNGDFFDWPFVETRAAAHGMSMQKE 556

Query: 117 -----------PLDPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 557 IGFQKDNQGEYKSSQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEEMCR 616

Query: 160 -A-----------LLDSHLLSDVYIKMM 175
            A           + D+     +Y+K +
Sbjct: 617 MATEEPQTLATYSVSDAVATYYMYMKYV 644


>gi|28493373|ref|NP_787534.1| oligoribonuclease [Tropheryma whipplei str. Twist]
 gi|81839131|sp|Q83GA7|ORN_TROWT RecName: Full=Oligoribonuclease
 gi|28476414|gb|AAO44503.1| oligoribonuclease [Tropheryma whipplei str. Twist]
          Length = 184

 Score = 42.9 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 34/169 (20%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGR---KNSPEALKLH---G 64
            D E TGL+ + D ++E+  V    D    +    V + P+            ++H   G
Sbjct: 13  VDCEMTGLNPERDELLEVAVVVTDKDLLPLDEGVNVVVSPSSEALGAMDNYVARMHRVSG 72

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           + DE L +    S   +   ++  +          ++   D  FI   +  ++   +   
Sbjct: 73  LLDE-LSNGVPVSEAQAMVKEYITKHVKTGGIMSGNSIATDRLFITRYMPDVH--AILHY 129

Query: 122 RIIDT-------LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           R+ID        +  A   +  + N               +  H A+ D
Sbjct: 130 RMIDVSSIKELAVRWAPEIYSGAPNK--------------KGGHRAMAD 164


>gi|15827135|ref|NP_301398.1| oligoribonuclease [Mycobacterium leprae TN]
 gi|221229613|ref|YP_002503029.1| oligoribonuclease [Mycobacterium leprae Br4923]
 gi|7227905|sp|O07708|ORN_MYCLE RecName: Full=Oligoribonuclease
 gi|2222713|emb|CAB09908.1| hypothetical protein MLCL383.34c [Mycobacterium leprae]
 gi|13092683|emb|CAC29935.1| putative oligoribonuclease [Mycobacterium leprae]
 gi|219932720|emb|CAR70520.1| putative oligoribonuclease [Mycobacterium leprae Br4923]
          Length = 215

 Score = 42.9 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 31/169 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA---LKLH---G 64
            D E TGLD  +D++IEI A V   D +       V +  +    S       ++H   G
Sbjct: 8   IDCEMTGLDLGSDQLIEIAALVTDADLNILGDGVDVVIHIDSTALSSMIDVVAEMHSRSG 67

Query: 65  ITDE------FLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDP 117
           + +E       L    S   +     +   + + A    ++   D  FI  ++  +  D 
Sbjct: 68  LINEVESSIVDLVTAESI--VLDYINNHVKQPKTAPLAGNSIATDRSFIARDMPTL--DS 123

Query: 118 LDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
               R+ID  SI    RR +P            +G   +    H AL D
Sbjct: 124 FLHYRMIDVSSIKELCRRWYPR---------IYFGQP-AKGLTHRALAD 162


>gi|325479508|gb|EGC82604.1| conserved domain protein [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 301

 Score = 42.9 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 28/127 (22%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K  +IV DIETTGLDS  D+++ +G + + +          +L     +N          
Sbjct: 14  KDNEIVLDIETTGLDSSVDKLVLLGIILVENNK-------SYLVQYFAEN---------- 56

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRII 124
               L++K     I+ +        N   I +N   FD+ F+N  L R N  P+ P R I
Sbjct: 57  ---DLEEK-RLLDIYEKIIP-----NKTIITYNGDTFDIPFLNNRLIRNNMLPVFP-RSI 106

Query: 125 DTLSIAR 131
           D L + +
Sbjct: 107 DLLKVIK 113


>gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
 gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
          Length = 936

 Score = 42.9 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 32/145 (22%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +  + I FD ETTG D+    ++ +              + V +  N  +  P      
Sbjct: 359 LSTQKSICFDTETTGTDANQCELVGLSFSIKK-----GEAWYVPVPVNCDEIQP------ 407

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            I DEF   KP F +          +     I  N KFD+  +      +  +       
Sbjct: 408 -IVDEF---KPIFEN------PAIGK-----IGQNIKFDMLVLKYYNVTMQGELF----- 447

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
            DT+       P +R++++ L + Y
Sbjct: 448 -DTMLAHYIIDPDTRHNMDILAENY 471


>gi|119025471|ref|YP_909316.1| oligoribonuclease [Bifidobacterium adolescentis ATCC 15703]
 gi|154486899|ref|ZP_02028306.1| hypothetical protein BIFADO_00732 [Bifidobacterium adolescentis
           L2-32]
 gi|118765055|dbj|BAF39234.1| oligoribonuclease [Bifidobacterium adolescentis ATCC 15703]
 gi|154084762|gb|EDN83807.1| hypothetical protein BIFADO_00732 [Bifidobacterium adolescentis
           L2-32]
          Length = 217

 Score = 42.9 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 58/170 (34%), Gaps = 25/170 (14%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP---EALKL 62
           R I  D E TGLD    D ++E+  V    D +  +      + P+ +           +
Sbjct: 16  RLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSQKAVDHMNDFVRAM 75

Query: 63  H---GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-----AHNAKFDVGFINAELQRIN 114
           H   G+ +E  +   S     ++  ++  +     +      +    D  F++  +  + 
Sbjct: 76  HTRSGLINE-WEHGLSLDEAQAKVIEYVRKFTPAGVKPLLAGNTIGSDKKFLDHYMPELM 134

Query: 115 KDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++    +  + T   +ARR +P                  +   H AL D
Sbjct: 135 ENLHYRTIDVSTFKELARRWYP---------AVYLNRPPKNGG-HRALAD 174


>gi|227886794|ref|ZP_04004599.1| exoribonuclease II [Escherichia coli 83972]
 gi|300816535|ref|ZP_07096756.1| exonuclease [Escherichia coli MS 107-1]
 gi|300821256|ref|ZP_07101404.1| exonuclease [Escherichia coli MS 119-7]
 gi|300899700|ref|ZP_07117927.1| exonuclease [Escherichia coli MS 198-1]
 gi|300905993|ref|ZP_07123717.1| exonuclease [Escherichia coli MS 84-1]
 gi|300922430|ref|ZP_07138550.1| exonuclease [Escherichia coli MS 182-1]
 gi|300929272|ref|ZP_07144748.1| exonuclease [Escherichia coli MS 187-1]
 gi|300974947|ref|ZP_07172786.1| exonuclease [Escherichia coli MS 45-1]
 gi|300975250|ref|ZP_07172914.1| exonuclease [Escherichia coli MS 200-1]
 gi|301047612|ref|ZP_07194678.1| exonuclease [Escherichia coli MS 185-1]
 gi|301302580|ref|ZP_07208710.1| exonuclease [Escherichia coli MS 124-1]
 gi|301325927|ref|ZP_07219348.1| exonuclease [Escherichia coli MS 78-1]
 gi|301646609|ref|ZP_07246475.1| exonuclease [Escherichia coli MS 146-1]
 gi|309796975|ref|ZP_07691375.1| exonuclease [Escherichia coli MS 145-7]
 gi|227836136|gb|EEJ46602.1| exoribonuclease II [Escherichia coli 83972]
 gi|281181261|dbj|BAI57591.1| oligoribonuclease [Escherichia coli SE15]
 gi|300300491|gb|EFJ56876.1| exonuclease [Escherichia coli MS 185-1]
 gi|300308749|gb|EFJ63269.1| exonuclease [Escherichia coli MS 200-1]
 gi|300356743|gb|EFJ72613.1| exonuclease [Escherichia coli MS 198-1]
 gi|300402160|gb|EFJ85698.1| exonuclease [Escherichia coli MS 84-1]
 gi|300410435|gb|EFJ93973.1| exonuclease [Escherichia coli MS 45-1]
 gi|300421249|gb|EFK04560.1| exonuclease [Escherichia coli MS 182-1]
 gi|300462765|gb|EFK26258.1| exonuclease [Escherichia coli MS 187-1]
 gi|300526145|gb|EFK47214.1| exonuclease [Escherichia coli MS 119-7]
 gi|300530765|gb|EFK51827.1| exonuclease [Escherichia coli MS 107-1]
 gi|300842105|gb|EFK69865.1| exonuclease [Escherichia coli MS 124-1]
 gi|300847280|gb|EFK75040.1| exonuclease [Escherichia coli MS 78-1]
 gi|301075156|gb|EFK89962.1| exonuclease [Escherichia coli MS 146-1]
 gi|308119388|gb|EFO56650.1| exonuclease [Escherichia coli MS 145-7]
 gi|315255507|gb|EFU35475.1| exonuclease [Escherichia coli MS 85-1]
 gi|315288511|gb|EFU47909.1| exonuclease [Escherichia coli MS 110-3]
 gi|315294059|gb|EFU53411.1| exonuclease [Escherichia coli MS 153-1]
 gi|315297605|gb|EFU56882.1| exonuclease [Escherichia coli MS 16-3]
 gi|324008605|gb|EGB77824.1| exonuclease [Escherichia coli MS 57-2]
 gi|324019342|gb|EGB88561.1| exonuclease [Escherichia coli MS 117-3]
          Length = 199

 Score = 42.9 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 19  MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 63

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 64  IAVHQ-SDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 122

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 123 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 171

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 172 KQGTHQAMDD 181


>gi|170723851|ref|YP_001751539.1| oligoribonuclease [Pseudomonas putida W619]
 gi|169761854|gb|ACA75170.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           W619]
          Length = 180

 Score = 42.9 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 57/176 (32%), Gaps = 29/176 (16%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-------DYSKTNRTFQVFLCPNGRKN 55
            +N    I  D+E TGLD  +D IIE+  +          +           +     + 
Sbjct: 1   MQNPQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVL---ARM 57

Query: 56  SPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINA 108
                + H   G+T    + K S +   ++   F  +      +    ++   D  F+  
Sbjct: 58  DEWNTRTHGGSGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYR 117

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++ +       +  + T+  +A R  P  R+                S H AL D
Sbjct: 118 HMRSLENYFHYRNLDVSTVKELAARWAPDVRDS-----------FKKGSTHLALDD 162


>gi|119469142|ref|ZP_01612126.1| oligoribonuclease [Alteromonadales bacterium TW-7]
 gi|119447394|gb|EAW28662.1| oligoribonuclease [Alteromonadales bacterium TW-7]
          Length = 181

 Score = 42.9 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 56/178 (31%), Gaps = 31/178 (17%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNGR 53
           +  NK   I  D+E TGL+   D+I+EI  V                       L     
Sbjct: 1   MTINKSNLIWLDLEMTGLEPATDKILEIATVVTDADLNILAEGPTIAIHQSDELLN---- 56

Query: 54  KNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFI 106
                    H   G+T              ++  +F  +      +    ++   D  F+
Sbjct: 57  GMDEWCTTQHGKSGLTARCKASAFDEEYAVAQTLEFLKQWVPAGASPMCGNSIGQDRRFM 116

Query: 107 NAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           N  ++ +       +  + T+  +ARR  P        L +     ++ +  H AL D
Sbjct: 117 NKYMRELEDFFHYRNLDVSTIKELARRWKP------EVLAQ-----VNKKGSHLALDD 163


>gi|67459846|ref|YP_247469.1| DNA polymerase III, epsilon subunit-like protein [Rickettsia felis
           URRWXCal2]
 gi|67459891|ref|YP_247513.1| DNA polymerase III, epsilon subunit-like protein [Rickettsia felis
           URRWXCal2]
 gi|67005379|gb|AAY62304.1| DNA polymerase III, epsilon subunit-like protein [Rickettsia felis
           URRWXCal2]
 gi|67005424|gb|AAY62348.1| DNA polymerase III, epsilon subunit-like protein [Rickettsia felis
           URRWXCal2]
          Length = 180

 Score = 42.9 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 8/83 (9%)

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNS 143
             F  E +   IAHNA FD  F +     +    +     +D    A +      + L  
Sbjct: 4   LKFLEEVD-IIIAHNAAFDRPFFDKMFPEV-ITKVWGCSRVDIDWKAEKI---ESHKLEY 58

Query: 144 LCKRYGITISHRSKHGALLDSHL 166
           L  +Y         H A++D   
Sbjct: 59  LTYKYNFFYEG---HRAVIDCRA 78


>gi|92113396|ref|YP_573324.1| oligoribonuclease [Chromohalobacter salexigens DSM 3043]
 gi|91796486|gb|ABE58625.1| Exonuclease [Chromohalobacter salexigens DSM 3043]
          Length = 187

 Score = 42.9 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 59/180 (32%), Gaps = 40/180 (22%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA---------LKL 62
            D+E TGLD + +RIIE+  +   +             P    + P+A          + 
Sbjct: 17  IDLEMTGLDPQRERIIEVATLITDNDLNLVAE-----GPVLAVHQPDALLAGMDEWNTRT 71

Query: 63  HG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           HG       + +  +    +     +    +    ++    ++   D  F+  E+  +  
Sbjct: 72  HGDSGLTQRVRESRIDTAEAERQTLAFLKRYVTPNSSPMCGNSVHQDRRFLVREMPEL-- 129

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT----ISHRSKHGALLDS-HLLSDV 170
                 R +D             + L  L KR+          R+ H A+ D    L+++
Sbjct: 130 ADFFHYRNLDV------------STLKELAKRWNPQALEGFEKRNTHQAMDDIRESLAEL 177


>gi|324015053|gb|EGB84272.1| exonuclease [Escherichia coli MS 60-1]
          Length = 199

 Score = 42.9 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 19  MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 63

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 64  IAVHQ-SDEQLALMDDWNVRTHTACGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 122

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 123 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 171

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 172 KQGTHQAMDD 181


>gi|78484978|ref|YP_390903.1| oligoribonuclease [Thiomicrospira crunogena XCL-2]
 gi|123555812|sp|Q31HZ4|ORN_THICR RecName: Full=Oligoribonuclease
 gi|78363264|gb|ABB41229.1| Exonuclease [Thiomicrospira crunogena XCL-2]
          Length = 184

 Score = 42.9 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 60/180 (33%), Gaps = 37/180 (20%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNGRK 54
            K++   I  D+E TGLD K D+IIEI  V                 +T Q +L      
Sbjct: 1   MKSENNLIWIDLEMTGLDHKADQIIEIATVVTDAELNVLAEGPVMAIQTEQHYLD----G 56

Query: 55  NSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFIN 107
                   H   G+T    +   + +    E   F      +  +    ++   D  F+ 
Sbjct: 57  MDAWCTTHHGNSGLTKRVQESTITMAQAEQETIKFLKPYVPKGKSPMCGNSICQDRRFLI 116

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
            ++  +  +     R +D             + L  L +R+  T+      +  H AL D
Sbjct: 117 EQMPEL--EQFFHYRNLDV------------SSLKELARRWAPTVYSGYKKKGAHLALDD 162


>gi|291458975|ref|ZP_06598365.1| conserved hypothetical protein [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418229|gb|EFE91948.1| conserved hypothetical protein [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 413

 Score = 42.9 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 30/151 (19%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           I FDIETTGL + N  +  IG V     S K  + F             E+L     TDE
Sbjct: 27  IFFDIETTGLSAHNASLYLIGTVVYEGGSWKIQQLF------------AESL-----TDE 69

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIIDT- 126
                     +   F+   +++      +  +FD+ F+   L +    +     + +D  
Sbjct: 70  I--------EMLEHFFALLSKKKLLLSFNGERFDIPFLEKLLSQYGLSESFQGIKSLDLY 121

Query: 127 --LSIARRKHPSSRNDLNSLCKRYGITISHR 155
             L  A++        L S  +  GI    R
Sbjct: 122 RELRPAKKLLSLPNYQLKSCERFLGIQREDR 152


>gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061]
 gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 930

 Score = 42.9 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 88/251 (35%), Gaps = 57/251 (22%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ET GLD+    ++ +        S+    +      +   ++P+ L LH        
Sbjct: 352 FDTETDGLDTLTANLVGMSFAIAAGESEVEAAY--LPLAHDYLDAPQQLDLH-------- 401

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                  + +       + N   I  N KFD G +         D +    + DT+  + 
Sbjct: 402 ------EVLTALKPLLEDANLPKIGQNLKFDRGVLAR------YDVVLEGIVFDTMLESY 449

Query: 132 RKHP-SSRNDLNSLCKRY----------------------GITISHRSKHGALLDSHLLS 168
             +  + R+D++SL +R+                       I +   +K+ A  D+ +  
Sbjct: 450 VLNSVAGRHDMDSLAERHLSYKTTTFEDIAGKGKKQLTFNQIPLEEAAKY-AAEDADVTL 508

Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK-- 226
            ++  M    +      +  +  F K E   VP +S ++R   L   I    L EH +  
Sbjct: 509 RLHQAMYPQLASA----EVLKKVFQKIEMPLVPVLSRMERTGVL---IDARTLAEHSREI 561

Query: 227 --TIQTLGKNA 235
              +  L K+A
Sbjct: 562 TVRLDELEKSA 572


>gi|121716074|ref|XP_001275646.1| exonuclease, putative [Aspergillus clavatus NRRL 1]
 gi|119403803|gb|EAW14220.1| exonuclease, putative [Aspergillus clavatus NRRL 1]
          Length = 746

 Score = 42.9 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 67/202 (33%), Gaps = 30/202 (14%)

Query: 10  IVFDIE---TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +  D E   T G  S+  RI     V   D           + P          +  G+T
Sbjct: 358 LAMDCEMCITEGGKSELARI---SLVRW-DGEVVLDE---LVKPE-LPIIDYLTRFSGMT 409

Query: 67  DEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            E L   P   + + I  +       + +  + H+   D+  +           L    I
Sbjct: 410 KEILD--PVTTTLAEIQKKLLTILTPR-SVLVGHSLNSDLNALK----------LTHPFI 456

Query: 124 IDT-LSIARRKHPSSRNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGSQ 180
           +DT +     + P  +  L  L ++Y G  I      H ++ D+  + ++  +    G +
Sbjct: 457 VDTAMVYPHPRGPPLKCSLKWLTQKYLGKEIQKGQTGHDSIEDARAVLELVKQKCEKGER 516

Query: 181 INFGFKTNEDRFFKEEKKTVPN 202
                 +NE  F +  + T P 
Sbjct: 517 WGTSDASNESIFRRLGRATRPR 538


>gi|300940651|ref|ZP_07155212.1| exonuclease [Escherichia coli MS 21-1]
 gi|300454539|gb|EFK18032.1| exonuclease [Escherichia coli MS 21-1]
          Length = 199

 Score = 42.9 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 58/190 (30%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 19  MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 63

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +  E  +  
Sbjct: 64  IAVHQ-SDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPEGKSPI 122

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P+    L+          +
Sbjct: 123 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPAI---LD--------GFT 171

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 172 KQGTHQAMDD 181


>gi|295109916|emb|CBL23869.1| hypothetical protein [Ruminococcus obeum A2-162]
          Length = 340

 Score = 42.9 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 30/145 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I +DIETTGL      +  IGAV              ++                +    
Sbjct: 34  IFYDIETTGLSRYTASVYLIGAVRYEKNQ--------WI----------------LYQWM 69

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++     S+  EF  F        I +N  +FD  F+    ++   D   P     ++ 
Sbjct: 70  AENAEEEVSVLQEFSVFLENAGYT-IQYNGNRFDQPFLEERYRKYKMD--SPFAGKTSVD 126

Query: 129 IARRKHPSSRNDLNSLCKRYGITIS 153
           + +   P     L  L +   + + 
Sbjct: 127 LYQLLKPCQ--SLLKLARMKQLDLE 149


>gi|238757512|ref|ZP_04618697.1| Oligoribonuclease [Yersinia aldovae ATCC 35236]
 gi|238704274|gb|EEP96806.1| Oligoribonuclease [Yersinia aldovae ATCC 35236]
          Length = 181

 Score = 42.9 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 61/193 (31%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           + +N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MAENQNNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPV 45

Query: 60  LKLH------GITD-------------EFLKDKPSFSSIFSEF--WDFFNEQN----AEW 94
           L +H      G+ D             E +K  P FS   +E    +F  +      +  
Sbjct: 46  LAVHQSDEQLGLMDEWNVRTHTGSGLVERVKASP-FSDHDAELQTIEFLKQWVPAGISPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI-- 152
             ++   D  F+   +  +  +     R +D             + L  L +R+   I  
Sbjct: 105 CGNSVGQDRRFLFRYMPEL--EAYFHYRYLDV------------STLKELARRWKPEILP 150

Query: 153 --SHRSKHGALLD 163
               ++ H AL D
Sbjct: 151 GFKKQNTHQALDD 163


>gi|84999262|ref|XP_954352.1| DNA polymerase i [Theileria annulata]
 gi|65305350|emb|CAI73675.1| DNA polymerase i, putative [Theileria annulata]
          Length = 1786

 Score = 42.9 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 49/142 (34%), Gaps = 20/142 (14%)

Query: 8    RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGIT 66
            + +  DIETTGLD   ++I  +        S     F++    P      P   +L  I 
Sbjct: 1220 KAVGVDIETTGLDHNTNQIRLVQLSVPNQPSVIIDLFKLNTNNPESDNVVPGRNEL--IK 1277

Query: 67   DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             E+LK+              F  ++   + HN KFD+ F+            D       
Sbjct: 1278 CEWLKN-------------LFKSKDTVKVFHNGKFDINFLRVYGFEFEGPIFDTMVASKL 1324

Query: 127  LSIARRKHPSSRNDLNSLCKRY 148
            L  +R         L  + +RY
Sbjct: 1325 LVASRYI----SCKLTHVSERY 1342


>gi|327253770|gb|EGE65399.1| exonuclease family protein [Escherichia coli STEC_7v]
          Length = 827

 Score = 42.9 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 55/183 (30%), Gaps = 50/183 (27%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF-- 69
            D+ET G +  N  I+ IGAV              F  P   +  P    +  +TD    
Sbjct: 646 IDLETMGTN-TNAPIVVIGAV--------------FFDPQTGEIGPVFYIVISLTDAMNT 690

Query: 70  -----------------------LKDKPSFSSIFSEFWDFF----NEQNAEWIAHNAKFD 102
                                  L D+       S F +F     +E+  +   + A FD
Sbjct: 691 GAVPDGGTIEWWLKQSSEARAAILTDQVKLKDALSRFREFINEYSDEKFVQVWGNGATFD 750

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
              +    +R+  D   P R  +   +          D ++   R  I       H AL 
Sbjct: 751 NAILRTSYERL--DIPCPWRYHNDRDVRTIVELGKTIDFDA---RTVIPFEG-VHHNALD 804

Query: 163 DSH 165
           D+ 
Sbjct: 805 DAR 807


>gi|116073128|ref|ZP_01470390.1| DNA polymerase I [Synechococcus sp. RS9916]
 gi|116068433|gb|EAU74185.1| DNA polymerase I [Synechococcus sp. RS9916]
          Length = 1007

 Score = 42.9 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 56/157 (35%), Gaps = 22/157 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  ++ +  +  D ET+ L+    +++ +G     D          ++ P G        
Sbjct: 392 MACRDPLAPVAVDTETSDLNPFKAQLVGVGVCWGADLKDL-----AYI-PVGHMAPAAP- 444

Query: 61  KLHGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                  E    +P   +  ++      +    +      NAK+D   +      +    
Sbjct: 445 -----DGEDAAGEPEQLALDAVLQALAPWLASSDHPKALQNAKYDRLILLRHGLTLGGV- 498

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKR-YGITIS 153
                ++DTL     +  ++++ L+ + +R YGIT +
Sbjct: 499 -----VMDTLLADYLRDAAAKHGLDLMAQRDYGITPT 530


>gi|145542502|ref|XP_001456938.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424752|emb|CAK89541.1| unnamed protein product [Paramecium tetraurelia]
          Length = 176

 Score = 42.9 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 57/166 (34%), Gaps = 31/166 (18%)

Query: 15  ETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRK---NSPEALKLH---GITD 67
           E TGL+   D+I+EI  V          +   + +  + +          K H   G+ +
Sbjct: 2   EMTGLNVFQDQILEIACVLTDFKLETIIKGPHLVIHADNQVLEGMDQWCTKTHKASGLYE 61

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           E LK   +      +  +F N+ N          ++   D  F+   + ++  D     R
Sbjct: 62  ESLKSTLNVQQAEEQILNFLNQNNIPPKVLPLAGNSVYMDRLFVMKNMPKL--DQFLHYR 119

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK-----HGALLD 163
           I+D             + +  LC+R    + +        H AL D
Sbjct: 120 IVDV------------SSVQLLCRRLNPYVCNHQPQKKLNHRALDD 153


>gi|156741494|ref|YP_001431623.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
 gi|156232822|gb|ABU57605.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
          Length = 972

 Score = 42.9 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 49/156 (31%), Gaps = 37/156 (23%)

Query: 10  IVFDIETTGLDSKNDRII--EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + FD ET G++   D ++   +  V    +                            T 
Sbjct: 388 VAFDTETRGMNPLRDDLVGLSLATVPGRAWYIPVG--HT-------------------TG 426

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E    +     + +    FF +     +AHNAKFD+  +    +R            DT+
Sbjct: 427 EM---QLPRDRVIAALRSFFADPARPKVAHNAKFDIEVL----ERAGMPVA--GLSFDTM 477

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             A       R +L  L   Y + ++      A+ D
Sbjct: 478 LAAGLL--DKRRNLKDLA-FYELELA--EPLDAIGD 508


>gi|256394672|ref|YP_003116236.1| exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
 gi|256360898|gb|ACU74395.1| Exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
          Length = 188

 Score = 42.9 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 53/176 (30%), Gaps = 16/176 (9%)

Query: 11  VFDIETT---GLDSKN--DRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           V D+E T   G    +    IIEIG   V++    +  +  Q+ + P     S     L 
Sbjct: 10  VVDVEATCWSGKQPADQVSEIIEIGLTIVDVHKRVRLAKH-QIMVRPERSTVSEFCTGLT 68

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G+T   +    +F+    +        +  W +        F+        + P      
Sbjct: 69  GLTQAQVDTGVTFAEACDQLRRQHYADSRPWASWGDYDRKQFLRQCDATTVRYPFSSLHT 128

Query: 124 IDTLSIA----RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
                 A      K     + L    +   + +  R   GA    ++ + +   M 
Sbjct: 129 NAKQQFAQANGWTKGVGMHHAL----EIAQLPLEGRHHCGADDAWNIAALILQLMT 180


>gi|331677519|ref|ZP_08378194.1| ribonuclease T (Exoribonuclease T) (RNase T) [Escherichia coli
          H591]
 gi|331073979|gb|EGI45299.1| ribonuclease T (Exoribonuclease T) (RNase T) [Escherichia coli
          H591]
          Length = 57

 Score = 42.9 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 3  RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK 39
          R      +V D+ET G ++K D ++EI A+ L    +
Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQ 49


>gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
 gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
          Length = 892

 Score = 42.9 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 30/146 (20%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    R++ I         + +  F +   P G       ++L        
Sbjct: 317 AFDTETTALDPMKARLVGISL-----ALEPDEAFYI---PVGHAYEGAPVQL-------- 360

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                  ++       F       I  N K+D   ++    +I+          DT+  A
Sbjct: 361 ----DRDAVLRILAPAFENTKITKIGQNVKYDWTVLSRCGFKIDGPVF------DTMIAA 410

Query: 131 RRKHPSSR-NDLNSLCKRYGITISHR 155
              +P+ R   L+ L   Y   ++HR
Sbjct: 411 YLLNPTRRSYGLDRLAADY---LNHR 433


>gi|317493562|ref|ZP_07951983.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918505|gb|EFV39843.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 181

 Score = 42.9 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  ++   I  D+E TGL+ + DRIIEI                  +         E   
Sbjct: 1   MSGSETNLIWIDLEMTGLNPEVDRIIEIA---------------TLVTDANLNILAEGPV 45

Query: 60  LKLHGITDEFLK-------------------DKPSFSS--IFSEFWDFFNEQ----NAEW 94
           + +H  +DE L                       +F       +  +F  +      +  
Sbjct: 46  IAVHQ-SDEQLALMDEWNVRTHTGSGLVERVKASTFDEATAAQKTIEFLQQWVPAGVSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  + +        + TL  +ARR  P        L         
Sbjct: 105 CGNSVGQDRRFLFRYMPELEQYFHYRYLDVSTLKELARRWKPEI------LA-----GFK 153

Query: 154 HRSKHGALLD 163
            +  H AL D
Sbjct: 154 KQGTHQALDD 163


>gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
 gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
          Length = 928

 Score = 42.9 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 32/140 (22%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           ++ FD ETT +D+    ++ I                    P                  
Sbjct: 357 EVCFDTETTNVDALEAELVGISFCWAAHKG------HYLPFP------------------ 392

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             K+K + + +  +F  FF  +    +  N K+D+  +       N        + DT+ 
Sbjct: 393 --KEKEAATKLIEQFRPFFENEQIAKVGQNLKYDLKVLQ------NYGVEVQGALFDTMI 444

Query: 129 IARRKHPSSRNDLNSLCKRY 148
                +P  R++++ L + Y
Sbjct: 445 AHYLLNPDMRHNMDILSETY 464


>gi|193064783|ref|ZP_03045860.1| exonuclease family protein [Escherichia coli E22]
 gi|192927468|gb|EDV82085.1| exonuclease family protein [Escherichia coli E22]
          Length = 826

 Score = 42.9 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 56/183 (30%), Gaps = 50/183 (27%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF-- 69
            D+ET G +  N  I+ IGAV              F  P   +  P    +  +TD    
Sbjct: 645 IDLETMGTN-TNAPIVVIGAV--------------FFDPQTGEIGPVFYIVISLTDAMNT 689

Query: 70  -----------------------LKDKPSFSSIFSEFWDFF----NEQNAEWIAHNAKFD 102
                                  L D+       S F +F     +E+  +   + A FD
Sbjct: 690 GAVPDGGTIEWWLKQSSEARAAILTDQVKLKDALSRFREFINEYSDEKLVQVWGNGATFD 749

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
              +    +R+  D   P R  +   +          D ++   R  I      +H AL 
Sbjct: 750 NAILRTSYERL--DIPCPWRYYNDRDVRTIVELGKTIDFDA---RTVIPFEG-VRHNALD 803

Query: 163 DSH 165
           D+ 
Sbjct: 804 DAR 806


>gi|71400147|ref|XP_802963.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70865423|gb|EAN81517.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 160

 Score = 42.9 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 11/81 (13%)

Query: 6   KMRKIVFDIE-----TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEA 59
             R   FD+E       G D   + IIE G       +     F   + P NGR+ S E 
Sbjct: 84  PFRLFTFDLEFSGPPVFGPDGPTEDIIEFGFYSPAKDTV----FSCLVNPTNGRRVSQEV 139

Query: 60  LKLHGITDEFL-KDKPSFSSI 79
             L  IT E L K+   F   
Sbjct: 140 TALTNITQEMLEKEGLPFPEA 160


>gi|301609551|ref|XP_002934338.1| PREDICTED: DNA polymerase epsilon catalytic subunit A-like [Xenopus
           (Silurana) tropicalis]
          Length = 2206

 Score = 42.9 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 70/215 (32%), Gaps = 61/215 (28%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT--------FQVFLCPNGRKN 55
           + FDIETT L     D++ D+I+ I   ++   Y  TNR         F+    P     
Sbjct: 270 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYE-- 327

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRI 113
            P  +           ++P  + +   +++   E +    + +N   FD  F+       
Sbjct: 328 GPFCI----------FNEPDEAHLIQRWFEHMQETKPNIIVTYNGDFFDWPFVETRASVH 377

Query: 114 NKDPL---------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITI 152
               L                P   +D L   +R    P   ++L +  K + G   + +
Sbjct: 378 GMSMLQEIGFQKDNQGEYKSPPCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVEL 437

Query: 153 SHRSKHG------------ALLDSHLLSDVYIKMM 175
                              ++ D+     +Y+K +
Sbjct: 438 DPEEMCRMATEEPQVLATYSVSDAVATYYMYMKYV 472


>gi|257463062|ref|ZP_05627464.1| hypothetical protein FuD12_04361 [Fusobacterium sp. D12]
          Length = 57

 Score = 42.9 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 8/56 (14%)

Query: 125 DTLSIARRKHPSSR------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           DTL+  +      R      N L +LC+ + I + +   H AL D+    ++Y  +
Sbjct: 1   DTLAFTKCLKILGRLPQTENNKLETLCEAFQIPLEN--AHNALADAIAARNLYYYL 54


>gi|221102082|ref|XP_002161173.1| PREDICTED: similar to Oligoribonuclease, mitochondrial [Hydra
           magnipapillata]
          Length = 184

 Score = 42.9 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 57/176 (32%), Gaps = 38/176 (21%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLH--- 63
           R +  D+E TGLD   D IIE+   +   D +           P+   N PE++  +   
Sbjct: 8   RLVWVDLEMTGLDVDKDHIIEMAVLITDSDLNIIAEG------PDIIINQPESILQNMGD 61

Query: 64  ---------GITDEFLKDKPSFSSIFSEFWDFF----NEQNAEWIAHNAKFDVGFINAEL 110
                    G+T      + +      E   F     N++      +    D  F+   +
Sbjct: 62  WCKVQHGKSGLTKAVQVSRVTLKECEREMICFVSKYTNKEKCLLAGNTVHVDKEFLKKYM 121

Query: 111 QRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              +   L   RIID  ++    R  +P            Y       + H AL D
Sbjct: 122 P--DFMSLLHYRIIDVSTVKELCRAWYPLE----------YANAPKKINSHRALAD 165


>gi|194366202|ref|YP_002028812.1| oligoribonuclease [Stenotrophomonas maltophilia R551-3]
 gi|194349006|gb|ACF52129.1| Exonuclease RNase T and DNA polymerase III [Stenotrophomonas
           maltophilia R551-3]
          Length = 190

 Score = 42.9 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 35/176 (19%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSP-EALKL--- 62
           R I  D+E TGLD+ ND IIEI  V       T+    V    P    + P E L+    
Sbjct: 10  RLIWIDLEMTGLDTDNDSIIEIATV------VTDAQLNVLAEGPEFAIHHPLETLEAMDE 63

Query: 63  -----HGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
                H  +       D  +    + +   +    +     +    ++   D  F++ ++
Sbjct: 64  WNRNQHRRSGLWQRVVDSTVTLAQAEAQTVNFLAQWIPAGLSPMCGNSICQDRRFLHRQM 123

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            R+ K     +  + T+  +A+R  P       ++       +   S H AL D H
Sbjct: 124 PRLEKYFHYRNLDVSTVKELAKRWAP-------TVAA----GVGKNSNHTALSDVH 168


>gi|118602163|ref|YP_903378.1| oligoribonuclease [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|166216583|sp|A1AVF0|ORN_RUTMC RecName: Full=Oligoribonuclease
 gi|118567102|gb|ABL01907.1| Exonuclease, RNase T and DNA polymerase III [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 180

 Score = 42.9 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 50/169 (29%), Gaps = 21/169 (12%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGR---KNSPEALK 61
           K   I  D+E TGL  + D IIEI   V  +      +   + +  N            +
Sbjct: 4   KTNLIWIDLEMTGLIPEKDVIIEIATIVTNVQLHIIAQGPSLVIHQNDEILSNMDQWNTE 63

Query: 62  LH---GITDEF----LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            H   G+        L  K + +        + +   +    +    D  F+   +  + 
Sbjct: 64  HHTSSGLLRRVRESSLSCKQAEAQTLEFLKKYVHTGASPMCGNTICQDRRFLYNYMPTLE 123

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +      R ID  ++         N          +     S H AL D
Sbjct: 124 R--FFHYRHIDVSTLKELVIRWKPN--------AKMIFEKDSAHLALSD 162


>gi|42522865|ref|NP_968245.1| oligoribonuclease [Bdellovibrio bacteriovorus HD100]
 gi|39574061|emb|CAE79238.1| Oligoribonuclease [Bdellovibrio bacteriovorus HD100]
          Length = 175

 Score = 42.9 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 26/164 (15%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR---KNSPEALKLH---GI 65
            D+E TGLD + + IIE+ A+      K   TF+  +    +          + H   G+
Sbjct: 7   IDMEMTGLDVEKEVIIEVAAIVTDLNFKELETFETVVKQPQKYLDSMDAWNTEHHKKSGL 66

Query: 66  TDEFLKDKPSFSSIFSEFWDFFN------EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           T + + +      + ++  D         +       ++   D  FIN  +         
Sbjct: 67  TAK-VPNGMDPDQVEAKLVDMVKKHFPDPKDKPVLAGNSIMQDRLFINKYMPEFAGRL-- 123

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             R++D  S          N    + ++         KH AL D
Sbjct: 124 HYRMVDVSSWKVII----NNKFKYVYQKAN-------KHRALED 156


>gi|218195715|gb|EEC78142.1| hypothetical protein OsI_17699 [Oryza sativa Indica Group]
          Length = 463

 Score = 42.9 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 21/174 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E        + ++ +  V      K +      + P           + G++ + 
Sbjct: 143 LAIDCEMVLCHDGTEALVRVCVVNSNLEVKLDE----LVNPLKAVADYR-TSITGLSKKD 197

Query: 70  LKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK    S   +        + +    I H+   D+  +            D SR+IDT  
Sbjct: 198 LKGVTCSLVDVQKSLKKLLS-KGKILIGHSLSKDLHALK----------FDYSRVIDTAY 246

Query: 129 IARR--KHPSSRNDLNSLCKR-YGITI-SHRSKHGALLDSHLLSDVYIKMMVGG 178
           I +      ++   LNSLCK   G  +      H  L D+    ++ +  +  G
Sbjct: 247 IFKYANLPTTASASLNSLCKSVLGYAVREEGEPHNCLKDAEAAMNLVLAKLKHG 300


>gi|115460984|ref|NP_001054092.1| Os04g0650600 [Oryza sativa Japonica Group]
 gi|113565663|dbj|BAF16006.1| Os04g0650600 [Oryza sativa Japonica Group]
 gi|215697648|dbj|BAG91642.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629678|gb|EEE61810.1| hypothetical protein OsJ_16430 [Oryza sativa Japonica Group]
          Length = 463

 Score = 42.9 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 21/174 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E        + ++ +  V      K +      + P           + G++ + 
Sbjct: 143 LAIDCEMVLCHDGTEALVRVCVVNSNLEVKLDE----LVNPLKAVADYR-TSITGLSKKD 197

Query: 70  LKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK    S   +        + +    I H+   D+  +            D SR+IDT  
Sbjct: 198 LKGVTCSLVDVQKSLKKLLS-KGKILIGHSLSKDLHALK----------FDYSRVIDTAY 246

Query: 129 IARR--KHPSSRNDLNSLCKR-YGITI-SHRSKHGALLDSHLLSDVYIKMMVGG 178
           I +      ++   LNSLCK   G  +      H  L D+    ++ +  +  G
Sbjct: 247 IFKYANLPTTASASLNSLCKSVLGYAVREEGEPHNCLKDAEAAMNLVLAKLKHG 300


>gi|90399365|emb|CAH68267.1| H0212B02.12 [Oryza sativa Indica Group]
 gi|116311960|emb|CAJ86319.1| OSIGBa0113E10.2 [Oryza sativa Indica Group]
          Length = 464

 Score = 42.9 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 21/174 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E        + ++ +  V      K +      + P           + G++ + 
Sbjct: 144 LAIDCEMVLCHDGTEALVRVCVVNSNLEVKLDE----LVNPLKAVADYR-TSITGLSKKD 198

Query: 70  LKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK    S   +        + +    I H+   D+  +            D SR+IDT  
Sbjct: 199 LKGVTCSLVDVQKSLKKLLS-KGKILIGHSLSKDLHALK----------FDYSRVIDTAY 247

Query: 129 IARR--KHPSSRNDLNSLCKR-YGITI-SHRSKHGALLDSHLLSDVYIKMMVGG 178
           I +      ++   LNSLCK   G  +      H  L D+    ++ +  +  G
Sbjct: 248 IFKYANLPTTASASLNSLCKSVLGYAVREEGEPHNCLKDAEAAMNLVLAKLKHG 301


>gi|32488922|emb|CAE04503.1| OSJNBb0059K02.13 [Oryza sativa Japonica Group]
          Length = 464

 Score = 42.9 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 21/174 (12%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E        + ++ +  V      K +      + P           + G++ + 
Sbjct: 144 LAIDCEMVLCHDGTEALVRVCVVNSNLEVKLDE----LVNPLKAVADYR-TSITGLSKKD 198

Query: 70  LKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LK    S   +        + +    I H+   D+  +            D SR+IDT  
Sbjct: 199 LKGVTCSLVDVQKSLKKLLS-KGKILIGHSLSKDLHALK----------FDYSRVIDTAY 247

Query: 129 IARR--KHPSSRNDLNSLCKR-YGITI-SHRSKHGALLDSHLLSDVYIKMMVGG 178
           I +      ++   LNSLCK   G  +      H  L D+    ++ +  +  G
Sbjct: 248 IFKYANLPTTASASLNSLCKSVLGYAVREEGEPHNCLKDAEAAMNLVLAKLKHG 301


>gi|27904991|ref|NP_778117.1| oligoribonuclease [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|46396112|sp|Q89A34|ORN_BUCBP RecName: Full=Oligoribonuclease
 gi|27904389|gb|AAO27222.1| oligoribonuclease [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 160

 Score = 42.9 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 22/164 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGA------VELLDYSKTNRTFQ-----VFLCP 50
           +  +    I  D+E TGL+    +IIEI        +++L Y      +Q      F+ P
Sbjct: 1   MNTDIKNLIWIDLEMTGLNPNIHKIIEIATLITDKNLKILSYGPVIAIYQNNHQLSFMDP 60

Query: 51  NGRKNSPEALKLHGITD----EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
              K   +   +  I +    E L +  + +        +  +  +    ++   D  F+
Sbjct: 61  WNNKMHTKNGLITRIKNSLYTEHLAEIKTITF----LKKWVPKNTSPMCGNSISTDRQFL 116

Query: 107 NAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDL--NSLCKR 147
              +  + K        + T+  +A R  P   N L   +L K 
Sbjct: 117 FKYMPTLEKYFHYRQIDVSTIKELALRWKPKIYNKLKKKTLIKH 160


>gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1]
 gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1]
          Length = 928

 Score = 42.9 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 82/247 (33%), Gaps = 59/247 (23%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ET  LD+ +  I+ I                  + P      P A   H   D   
Sbjct: 352 AFDLETDALDTLSANIVGI---------------SFAIAPGEAAYLPVA---HDYLDA-- 391

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++   +++ ++      + +A  +  N K+D G +       N D        DT+  +
Sbjct: 392 PEQLDRAAVLAQLKPLLEDDSAWKVGQNLKYDRGVLK------NYDIELAGIKFDTMLES 445

Query: 131 RRKHPS-SRNDLNSLCKRY----------------------GITISHRSKHGALLDSHLL 167
              +    ++D++SL  R+                       I +   + H A  D+ + 
Sbjct: 446 YILNSVVGKHDMDSLAARWLNHKTVTFQEIAGKGKNQLTFNQIALEQ-ASHYAAEDADVT 504

Query: 168 SDVYIKM---MVGGSQINFGFKTNEDRFFKEEKKTVPN------ISLLKRDKPLFTRITK 218
             +++KM   +   +     F+  E        +   N        L +  K L  R+ +
Sbjct: 505 LQLHLKMWPELEKEAGPRKVFEQIEMPLLTVISRIERNGVLIDQAILAQHSKELTARLAE 564

Query: 219 EELDEHD 225
            EL  H+
Sbjct: 565 LELKAHE 571


>gi|291282281|ref|YP_003499099.1| putative exonuclease [Escherichia coli O55:H7 str. CB9615]
 gi|290762154|gb|ADD56115.1| putative exonuclease [Escherichia coli O55:H7 str. CB9615]
          Length = 816

 Score = 42.9 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 61/199 (30%), Gaps = 53/199 (26%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH-------G 64
            D+ET G +  +  II IGA+              F  P      PE  K         G
Sbjct: 638 IDLETMGKNP-DAPIISIGAI--------------FFDPQTGDMGPEFSK-TIDLDTAGG 681

Query: 65  ITDEFL----------------KDKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVG 104
           + D  +                 D+        +  +F +E + E+      + A FD  
Sbjct: 682 VIDRDVIKWWLKQSREAQSAIMTDEIPLDDALLQLREFIDENSGEFFVQVWGNGANFDNT 741

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            +    +R       P R  +   +          D ++   R  I      +H AL D+
Sbjct: 742 ILRRSYERQGIP--CPWRYCNDRDVRTIVELGKAVDFDA---RTAIPFEGE-RHNALDDA 795

Query: 165 HLLSD----VYIKMMVGGS 179
              +     ++ K++   +
Sbjct: 796 RYQAKYVSTIWQKLLPNQA 814


>gi|302772661|ref|XP_002969748.1| hypothetical protein SELMODRAFT_410683 [Selaginella moellendorffii]
 gi|300162259|gb|EFJ28872.1| hypothetical protein SELMODRAFT_410683 [Selaginella moellendorffii]
          Length = 312

 Score = 42.9 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 56/177 (31%), Gaps = 23/177 (12%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           ++++ +  D E        ++I+++   +       +    + + P+ R        +HG
Sbjct: 51  SEVKLLALDCEMVECIGNEEQIVQLCVADRDCKKLVD----ILVKPS-RPIVDYRTPVHG 105

Query: 65  ITDEFLKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPS 121
           IT + L             +  +         + H    D+  +     R I+   L  +
Sbjct: 106 ITAQDLNRAAYCTQKDAQDKLVELLTP-GTILVGHTLSHDLEILKISYPRVIDVGLLFKT 164

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCK-RYGITISHRS-KHGALLDSHLLSDVYIKMMV 176
               T+             LN LCK   G  +     +H    D+     + +  +V
Sbjct: 165 NREATV------------GLNDLCKIILGFDMRGEDGRHDCFQDTVAAMKLALHELV 209


>gi|328353909|emb|CCA40306.1| Uncharacterized protein YDR514C [Pichia pastoris CBS 7435]
          Length = 269

 Score = 42.9 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 54/137 (39%), Gaps = 17/137 (12%)

Query: 92  AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT 151
              + HN   D+  +           +    IIDT  +   +  +S+++L  + +R G+ 
Sbjct: 140 VALVGHNLIGDLKTLKNA-----GITIPILPIIDTRELWLNQVNTSKSNLKYILRRLGLP 194

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF--------FKEEKKTVPNI 203
             H   H A  D++    +   + +  + ++     +E+ +          +  K +P  
Sbjct: 195 --HSFLHNAANDAYYT--LLASLKLAQTNVSLNLLYSEEEWEIPRKTSNSNDFPKPLPQD 250

Query: 204 SLLKRDKPLFTRITKEE 220
               RD+ + +++ +EE
Sbjct: 251 IHQLRDRLIRSKLVREE 267


>gi|227546622|ref|ZP_03976671.1| oligoribonuclease [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227212939|gb|EEI80818.1| oligoribonuclease [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 216

 Score = 42.9 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 23/169 (13%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP---EALKL 62
           R I  D E TGLD    D ++E+  V    D +  +      + P+ +  +       ++
Sbjct: 16  RLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSEKAVNHMNDFVRQM 75

Query: 63  H---GITDEF---LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           H   G+ +E+   L    +   +      F  E     +A N    D  F++  +  +  
Sbjct: 76  HTRSGLINEWENGLSLAEAEQKVTEYVLRFTPEGVRPLLAGNTIGSDKKFLDHCMPNLMS 135

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                S  + T   +ARR +P            Y         H AL D
Sbjct: 136 HLHYRSVDVSTFKELARRWYP----------AVYENRPPKNGGHRALAD 174


>gi|109521529|ref|YP_655957.1| gp92 [Mycobacterium phage Wildcat]
 gi|91980981|gb|ABE67697.1| gp92 [Mycobacterium phage Wildcat]
          Length = 286

 Score = 42.9 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 46/141 (32%), Gaps = 34/141 (24%)

Query: 74  PSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
           P    +     D  ++ +   +  N  +FD+G + + +   N +P  P   +D + ++R 
Sbjct: 84  PGHEDMIRRARDVMSQAD-FVVGWNSKQFDMGNLRSHMAEYNMNPPAPHHDLDLIKVSRS 142

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALL------------------------------ 162
           +     + L      +G  +  +  H   L                              
Sbjct: 143 QFGFMSHTLEEAAAHFG--LDGKMPHSGELWNDLRWLPYFDPDGEKLQTSRSLMKQYNQR 200

Query: 163 DSHLLSDVYIKMMVGGSQINF 183
           D  L   V++KM+    ++N 
Sbjct: 201 DVELTEQVFMKMIPWIPRLNL 221


>gi|262393026|ref|YP_003284880.1| oligoribonuclease [Vibrio sp. Ex25]
 gi|262336620|gb|ACY50415.1| oligoribonuclease [Vibrio sp. Ex25]
          Length = 181

 Score = 42.9 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 37/181 (20%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPE-- 58
           +  +    I  D+E TGLD +  +IIEI ++       T+    +    P    + PE  
Sbjct: 1   MSFSDQNLIWVDLEMTGLDPETHKIIEIASI------VTDSELNILAEGPVLAIHQPEEE 54

Query: 59  -------ALKLH---GITDEFLKD-KPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDV 103
                      H   G+  E +++ K S     ++  +F  +      +    ++   D 
Sbjct: 55  LAKMDDWCTNTHTASGLV-ERVRNSKISEQDAVAQTIEFLEKWVPKGASPICGNSIGQDR 113

Query: 104 GFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
            F+   +  + +        + TL  +ARR  P   N             + +  H AL 
Sbjct: 114 RFLYKHMPELEEFFHYRYVDVSTLKELARRWQPEVLNG-----------FTKQGTHLALD 162

Query: 163 D 163
           D
Sbjct: 163 D 163


>gi|213691488|ref|YP_002322074.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213522949|gb|ACJ51696.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320457562|dbj|BAJ68183.1| oligoribonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 216

 Score = 42.9 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 58/169 (34%), Gaps = 23/169 (13%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP---EALKL 62
           R I  D E TGLD    D ++E+  V    D +  +      + P+ +           +
Sbjct: 16  RLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDFVIKPSQKAVDHMNDFVRNM 75

Query: 63  H---GITDEF---LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           H   G+ +E+   L  + +   +      F  E     +A N    D  F++  +  +  
Sbjct: 76  HTRSGLINEWGHGLSLEEAEQKVTDYVLRFTPEGVRPLLAGNTIGSDKKFLDHYMPDLMS 135

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                S  + TL  +ARR +P            Y         H AL D
Sbjct: 136 HLHYRSVDVSTLKELARRWYP----------AVYENRPPKNGGHRALAD 174


>gi|198284062|ref|YP_002220383.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665313|ref|YP_002426714.1| oligoribonuclease Orn [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248583|gb|ACH84176.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218517526|gb|ACK78112.1| oligoribonuclease Orn [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 194

 Score = 42.9 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 52/173 (30%), Gaps = 34/173 (19%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL------- 60
           R I  D+E TGL    D+I+EI  +   D  +          P    + PE +       
Sbjct: 7   RLIWIDLEMTGLHPGQDQILEIATLVTDDSLRILCE-----GPVLAVHQPEFVLAALDDW 61

Query: 61  -KLHGIT--------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
            +    T        D  L    + +              +    ++   D  F+   + 
Sbjct: 62  NQRTHSTSGLLQRVRDSRLDMAAAETQTLDFLHQHVTTGTSPMCGNSVCQDRRFLARLMP 121

Query: 112 RINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           R+ +        + T+  +A R +P                 S   +H AL D
Sbjct: 122 RLERFFHYRMIDVSTVKELATRWYPHLP------------KFSKAERHEALAD 162


>gi|70999416|ref|XP_754427.1| conserved hypothetical protein [Aspergillus fumigatus Af293]
 gi|66852064|gb|EAL92389.1| conserved hypothetical protein [Aspergillus fumigatus Af293]
 gi|159127443|gb|EDP52558.1| conserved hypothetical protein [Aspergillus fumigatus A1163]
          Length = 626

 Score = 42.9 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 12/93 (12%)

Query: 89  EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-----IIDTLSIAR-RKHPSSRNDLN 142
           +++   + HN   DV ++ +    +     +         IDT  + R  +   +++ L 
Sbjct: 525 KRSLILVGHNTAMDVKYLAS----LGIPVFEDVTAAFVERIDTAELYRAIRGEFNQHSLA 580

Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           S+    GI   +   H A  D+    +  ++M+
Sbjct: 581 SILGELGIIGWN--LHNAGNDARYTLEALVRMI 611


>gi|322703048|gb|EFY94664.1| hypothetical protein MAA_09885 [Metarhizium anisopliae ARSEF 23]
          Length = 310

 Score = 42.9 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 12/154 (7%)

Query: 75  SFSSIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR- 132
             + +                + H    ++  +    Q++N + L+P   IDT   AR  
Sbjct: 142 PLADLDKRLKKLLARCFPLVLVVHGGHREITLL----QKLNIN-LNPIFTIDTTKAARYP 196

Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED-- 190
                   L  L K + I  +    H A  D+H    V + + V   +   G K      
Sbjct: 197 LQAFYDFSLKRLLKEFNIPFTGEHLHIAGNDAHFTLRVLLMIAVCDVRRELGSKEVPAWV 256

Query: 191 -RFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
             F    +  +P + L +  K    R  +EE   
Sbjct: 257 PVFEAIARAPLPPMPLKRAQKAARKR--REERAA 288


>gi|320534579|ref|ZP_08035028.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133200|gb|EFW25699.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 213

 Score = 42.9 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 26/176 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-- 57
           M   + +  +  D E TGLD   D +IE+  +    +         V + P         
Sbjct: 11  MTTSDPL--VWIDCEMTGLDQSADALIEVAVIVTDYELKPLADGIDVLIKPPAAALEQMD 68

Query: 58  -EALKLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINA 108
                +H   G+    L+D  +  +      ++        + A+   ++   D  F+  
Sbjct: 69  DYVRNMHTSSGLL-ADLEDGVTMEAARETVLNYVTSLVPEARTAQLAGNSVGTDKAFLAR 127

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++  + K        + +L  +A+R +P +        K+ G        H AL D
Sbjct: 128 DMPDLIKHLHYRIVDVSSLKELAKRWYPRTFFH---APKKAG-------GHRALAD 173


>gi|293392189|ref|ZP_06636523.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952723|gb|EFE02842.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 182

 Score = 42.9 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 59/181 (32%), Gaps = 37/181 (20%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNGR 53
           +  +K   I  D+E TGLD + +RIIEI  +                       L     
Sbjct: 1   MSFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAIHQPDELLN---- 56

Query: 54  KNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFI 106
           K S   +K H   G+ +     K +  +   +  DF      +  +    ++   D  F+
Sbjct: 57  KMSEWCVKTHMANGLIERVKASKLTERAAELQTLDFLKKYVPKGTSPICGNSVAQDKRFL 116

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGALL 162
              +  +        R +D             + L  L  R+   I    + ++ H AL 
Sbjct: 117 FKYMPEL--ADYFHYRHLDV------------STLKELAARWKADILNGFNKQNTHLALD 162

Query: 163 D 163
           D
Sbjct: 163 D 163


>gi|332292966|ref|YP_004431575.1| Excinuclease ABC C subunit domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171052|gb|AEE20307.1| Excinuclease ABC C subunit domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 453

 Score = 42.9 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  N +R+   D++T   + K    I    V + D  +     +  + P    +  +  +
Sbjct: 5   LHFNILRRAFLDLQTNSNNLKIASAIAFSVV-VFDDEEELYYHESLIKPLQVLSPDQ--E 61

Query: 62  LH-GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
              GIT+  L+  PSF  I S   D  N ++ E IA+   F    +    + I   
Sbjct: 62  FTYGITNISLRKAPSFIDIASLLID--NLEDCE-IAYFDNFSQQLLRGSFREIGYP 114


>gi|312882822|ref|ZP_07742555.1| oligoribonuclease [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369514|gb|EFP97033.1| oligoribonuclease [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 181

 Score = 42.9 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 58/179 (32%), Gaps = 33/179 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEA- 59
           +  +    I  D+E TGLD +  +IIEI  +       T+R   +    P    + PE  
Sbjct: 1   MSFDSQNLIWIDLEMTGLDPEEHKIIEIATI------VTDRELNILAEGPVLAIHQPEVE 54

Query: 60  --------LKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVG 104
                      H   G+ +       S  S  S+  DF  +      +    ++   D  
Sbjct: 55  LAKMDDWCTNTHTASGLVERVQSSAISEHSAVSQTIDFLEKWVPKGASPICGNSVGQDRR 114

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   + ++ +        + TL    R+       L+          S    H AL D
Sbjct: 115 FLYKHMPKLEEYFHYRYLDVSTLKELTRRWKPE--VLD--------GFSKAGTHLALDD 163


>gi|195398209|ref|XP_002057715.1| GJ17948 [Drosophila virilis]
 gi|194141369|gb|EDW57788.1| GJ17948 [Drosophila virilis]
          Length = 344

 Score = 42.9 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 49/155 (31%), Gaps = 36/155 (23%)

Query: 9   KIVFDIETTGLDSKNDR---IIEIGAVEL-----LDYSKTNRT--FQVF-------LCPN 51
             V D+ET+ L + N+    I E+           D  +T                L P 
Sbjct: 21  FAVLDLETSNLPAFNNNRVSITELCIYAFDPAVLKDNVETEEATPLDELTPASPNALPPP 80

Query: 52  GRK-------------NSPEALKLHGITDEFLKDKPSFSS----IFSEFWDFFNEQNAEW 94
            R                P A ++ G+ +  L+ +         I   F +         
Sbjct: 81  PRVLHKLNLLFQPSMTVHPGAERITGLNNYILERESKLDENAGQIILRFLEHLRPPVC-L 139

Query: 95  IAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           IAHN   FD   I   L ++N +    +  +D+L 
Sbjct: 140 IAHNGWAFDFPIIKQALDKLNINLPASTLCVDSLR 174


>gi|332994343|gb|AEF04398.1| hypothetical protein ambt_14420 [Alteromonas sp. SN2]
          Length = 176

 Score = 42.5 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
          + D+E +G  +++   IEIG V      + K  R F  ++         EA  LHGIT  
Sbjct: 13 IIDLEASGFGARS-YPIEIGIVRYDGAKWCKLIRPFDSWVH-----WDQEAESLHGITRA 66

Query: 69 FL 70
           L
Sbjct: 67 ML 68


>gi|71083189|ref|YP_265908.1| exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062302|gb|AAZ21305.1| Exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1062]
          Length = 475

 Score = 42.5 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 67/187 (35%), Gaps = 24/187 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGI 65
           M   ++DIE++  ++    IIE+G + +    K    F      P G      AL ++  
Sbjct: 1   MNLAIWDIESSSANTSWGSIIEVGGILVDPNFKELDRFNFRCRLPEGEVPQAMALIVNKT 60

Query: 66  TDEFL-KDKPSFSSIFSEF-WDFFNEQNAEWIAH-NAKFDVGFINAELQRINKDPL---- 118
           + + L K   S   + S+    F     A ++   N  FD   I  E  R  + P     
Sbjct: 61  SVDLLTKGNLSHYQMLSQLEATFKKWSPAMFMGWSNIGFDDEMIRNEFFRGIRYPYITNA 120

Query: 119 DPSRIIDTLSIARRKHPSSRN--------------DLNSLCKRYGITISHRSKHGALLDS 164
            P++  D L+I R  H    +               L SL +  G        H AL D+
Sbjct: 121 TPNKRHDGLNIVRGAHAVDESVVKTEINAKGNAVMKLESLARMNG--FESSGAHSALFDA 178

Query: 165 HLLSDVY 171
            L   V 
Sbjct: 179 ELTVKVL 185


>gi|71900855|ref|ZP_00682972.1| Exonuclease [Xylella fastidiosa Ann-1]
 gi|71729379|gb|EAO31493.1| Exonuclease [Xylella fastidiosa Ann-1]
          Length = 193

 Score = 42.5 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 33/177 (18%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSP----E 58
           ++  R I  D+E TGLD+  D IIEI  V       T+    V    P    + P    E
Sbjct: 9   ESDRRLIWIDLEMTGLDTHRDSIIEIATV------VTDAQLNVLAEGPEFAISHPLNVLE 62

Query: 59  ALK-----LHGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           A+       H  +       +  ++   + +S  +    +     +    ++   D  F+
Sbjct: 63  AMDEWNRNQHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKTGASPMCGNSICQDRRFL 122

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + ++  + +     +  + TL         S + L+ + K         S H AL D
Sbjct: 123 HRQMPCLERYFHYRNLDVSTLKELAGCW--SPSILDGVVK--------TSSHTALSD 169


>gi|328770499|gb|EGF80541.1| hypothetical protein BATDEDRAFT_35162 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1084

 Score = 42.5 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 10/120 (8%)

Query: 79   IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138
            I  +      +    ++ H  K D         R     + P +IIDT+ I   K  S +
Sbjct: 946  IAYKKLRLLVDIGCIFVGHGLKKDC--------RTINILIPPHQIIDTVDIYYLKQYSRK 997

Query: 139  NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
              L  L   +     H S H ++ D+     +Y K +    Q  F   T  +  ++E +K
Sbjct: 998  LSLRFLVWFFFKEDIHSSSHDSVEDARGALRIYQKYLEAKEQARF--DTLLEEIYQEGRK 1055


>gi|153802855|ref|ZP_01957441.1| oligoribonuclease [Vibrio cholerae MZO-3]
 gi|124121610|gb|EAY40353.1| oligoribonuclease [Vibrio cholerae MZO-3]
          Length = 156

 Score = 42.5 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 23/150 (15%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEA- 59
           +  +    I  D+E TGLD +  +IIE+  +       T+    +    P    + PE+ 
Sbjct: 1   MSFSDQNLIWIDLEMTGLDPEMHKIIEMATI------VTDSELNILAEGPVIAIHQPESE 54

Query: 60  --------LKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVG 104
                      H   G+     + + S      +   F      E  +    ++   D  
Sbjct: 55  LAKMDEWCTTTHTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRR 114

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKH 134
           F+   + R+          + T+    R+ 
Sbjct: 115 FLYKHMPRLEAYFHYRYIDVSTIKELTRRW 144


>gi|298387037|ref|ZP_06996591.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
 gi|298260187|gb|EFI03057.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
          Length = 949

 Score = 42.5 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 32/141 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ETTG +              +D      +F +          P+  +      
Sbjct: 377 KILSLDTETTGTEP-------------MDAELVGMSFSITENQAFYVPVPDNRE------ 417

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LK       I +EF   F  +N+  +  N K+D+  +     ++           DT+
Sbjct: 418 EALK-------IVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALF------DTM 464

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P  R+ ++ L + Y
Sbjct: 465 IAHYVLQPELRHGMDYLAEIY 485


>gi|253568986|ref|ZP_04846396.1| DNA polymerase I [Bacteroides sp. 1_1_6]
 gi|251841005|gb|EES69086.1| DNA polymerase I [Bacteroides sp. 1_1_6]
          Length = 949

 Score = 42.5 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 32/141 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ETTG +              +D      +F +          P+  +      
Sbjct: 377 KILSLDTETTGTEP-------------MDAELVGMSFSITENQAFYVPVPDNRE------ 417

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LK       I +EF   F  +N+  +  N K+D+  +     ++           DT+
Sbjct: 418 EALK-------IVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALF------DTM 464

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P  R+ ++ L + Y
Sbjct: 465 IAHYVLQPELRHGMDYLAEIY 485


>gi|332160015|ref|YP_004296592.1| oligoribonuclease [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318607428|emb|CBY28926.1| 3'-to-5' oligoribonuclease (orn) [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664245|gb|ADZ40889.1| oligoribonuclease [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330862350|emb|CBX72509.1| oligoribonuclease [Yersinia enterocolitica W22703]
          Length = 181

 Score = 42.5 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 61/190 (32%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           + +N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MAENQNNLIWIDLEMTGLDPEKDRIIEIA---------------TLVTDANLNILAEGPV 45

Query: 60  LKLH------GITD-------------EFLKDKPSFSSIFSEF--WDFFNEQ----NAEW 94
           L +H      G+ D             E +K  P F+   +E    +F  +      +  
Sbjct: 46  LAVHQSDEQLGLMDEWNVRTHTGSGLVERVKASP-FNDHDAELQTIEFLKQWVPAGTSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P        L         
Sbjct: 105 CGNSVGQDRRFLFRYMPELEAYFHYRYLDVSTLKELARRWKPEI------LA-----GFK 153

Query: 154 HRSKHGALLD 163
            ++ H AL D
Sbjct: 154 KQNTHQALDD 163


>gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145]
 gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145]
          Length = 931

 Score = 42.5 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 32/143 (22%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           + +++  D ETTGLD+ +  ++ +            R       P   K         GI
Sbjct: 356 QQKEVSMDTETTGLDANDAELVGLSFAYK------AREAYYIAVPKHEK---------GI 400

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +        F  +     +    +N   I  N K+D   +      +  +        D
Sbjct: 401 LE--------FLEVLRPLLE---NENIRKIGQNLKYDYIILKWYGIELKGEFF------D 443

Query: 126 TLSIARRKHPSSRNDLNSLCKRY 148
           T+       P +R++++ L + Y
Sbjct: 444 TMLAHYLLDPDTRHNMDVLSENY 466


>gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella tularensis subsp. novicida U112]
 gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
 gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112]
 gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
          Length = 897

 Score = 42.5 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 27/142 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET  L++    ++ +        +        ++    R                +
Sbjct: 323 AFDTETDSLNTYEANLVGLSFCAKEGRA-------FYIPLQHRYL-------------GV 362

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +     +  +    F +     +AHN KFD   ++     IN       ++ DT+ +A
Sbjct: 363 PQQLELGFVLDKLKRLFADSKKVKVAHNFKFDEKVLSKYAIEING------KVDDTMIMA 416

Query: 131 RRKHPSSRNDLNSLCK-RYGIT 151
                S ++D++SL K   GI 
Sbjct: 417 YVLKSSGKHDMDSLSKEHLGIE 438


>gi|58262592|ref|XP_568706.1| ribonuclease H [Cryptococcus neoformans var. neoformans JEC21]
 gi|58262594|ref|XP_568707.1| ribonuclease H [Cryptococcus neoformans var. neoformans JEC21]
 gi|57230880|gb|AAW47189.1| ribonuclease H, putative [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57230881|gb|AAW47190.1| ribonuclease H, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 655

 Score = 42.5 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 59/180 (32%), Gaps = 29/180 (16%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D E   +    D   E+  + ++D++     F   + P G        +  GIT E
Sbjct: 303 ILAIDCEMV-VSKDGD---ELARISVIDFNSGKNVFDELVLPPGEIVDYR-TQWSGITAE 357

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWI-------AHNAKFDVGFINAELQRINKDPLDPS 121
            L      +   S   +      +  I        H+ + D+  +           +   
Sbjct: 358 RLLSA---AHTISSIQNLLLSGPSPLITPHTILLGHSLECDLNALR----------IRHP 404

Query: 122 RIIDTLSIARR-KHPSSRNDLNSLC-KRYGITI-SHRSKHGALLDSHLLSDVY-IKMMVG 177
             IDT  I +  + P  +  L  L  K     I +  + H +  D+    D+  +K+  G
Sbjct: 405 LCIDTALIYKHPRGPPFKPGLKWLAQKWLQRDIQAGENGHDSEEDALACVDLLKMKLTNG 464


>gi|134119088|ref|XP_771779.1| hypothetical protein CNBN2240 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254379|gb|EAL17132.1| hypothetical protein CNBN2240 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 655

 Score = 42.5 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 59/180 (32%), Gaps = 29/180 (16%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D E   +    D   E+  + ++D++     F   + P G        +  GIT E
Sbjct: 303 ILAIDCEMV-VSKDGD---ELARISVIDFNSGKNVFDELVLPPGEIVDYR-TQWSGITAE 357

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWI-------AHNAKFDVGFINAELQRINKDPLDPS 121
            L      +   S   +      +  I        H+ + D+  +           +   
Sbjct: 358 RLLSA---AHTISSIQNLLLSGPSPLITPHTILLGHSLECDLNALR----------IRHP 404

Query: 122 RIIDTLSIARR-KHPSSRNDLNSLC-KRYGITI-SHRSKHGALLDSHLLSDVY-IKMMVG 177
             IDT  I +  + P  +  L  L  K     I +  + H +  D+    D+  +K+  G
Sbjct: 405 LCIDTALIYKHPRGPPFKPGLKWLAQKWLQRDIQAGENGHDSEEDALACVDLLKMKLTNG 464


>gi|301784461|ref|XP_002927639.1| PREDICTED: LOW QUALITY PROTEIN: putative RNA exonuclease
           NEF-sp-like [Ailuropoda melanoleuca]
          Length = 783

 Score = 42.5 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 51/171 (29%), Gaps = 29/171 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E   L SK   +  I  V        +      + P+ +          GIT + L 
Sbjct: 232 LDCEMC-LTSKGRELTRISLVAEGGCCIMDE----LVKPDNKILDYL-TSFSGITKKIL- 284

Query: 72  DKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             P       +           +A  + H+   D+  +                +IDT S
Sbjct: 285 -NPVTTKLKDV-QRHLKALLPPDAVLVGHSLDLDLRALKMI----------HPYVIDT-S 331

Query: 129 IARRKHPSSRNDLNSLCKR-YG--ITISHRSKHGALLDSHLLSDV---YIK 173
           +   +    R  L  L K   G  I    R  H A  D+    ++   ++K
Sbjct: 332 LLYVREQGRRFKLKFLAKAILGKDIQCPDRLGHDATEDARTTLELARFFLK 382


>gi|301023446|ref|ZP_07187227.1| exonuclease [Escherichia coli MS 69-1]
 gi|300396998|gb|EFJ80536.1| exonuclease [Escherichia coli MS 69-1]
          Length = 199

 Score = 42.5 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 57/190 (30%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 19  MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 63

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 64  IAVHQ-SDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 122

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P+    L+          +
Sbjct: 123 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPAI---LD--------GFT 171

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 172 KQGTHQAMDD 181


>gi|281339700|gb|EFB15284.1| hypothetical protein PANDA_017443 [Ailuropoda melanoleuca]
          Length = 748

 Score = 42.5 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 51/171 (29%), Gaps = 29/171 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E   L SK   +  I  V        +      + P+ +          GIT + L 
Sbjct: 232 LDCEMC-LTSKGRELTRISLVAEGGCCIMDE----LVKPDNKILDYL-TSFSGITKKIL- 284

Query: 72  DKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             P       +           +A  + H+   D+  +                +IDT S
Sbjct: 285 -NPVTTKLKDV-QRHLKALLPPDAVLVGHSLDLDLRALKMI----------HPYVIDT-S 331

Query: 129 IARRKHPSSRNDLNSLCKR-YG--ITISHRSKHGALLDSHLLSDV---YIK 173
           +   +    R  L  L K   G  I    R  H A  D+    ++   ++K
Sbjct: 332 LLYVREQGRRFKLKFLAKAILGKDIQCPDRLGHDATEDARTTLELARFFLK 382


>gi|297843446|ref|XP_002889604.1| hypothetical protein ARALYDRAFT_887848 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335446|gb|EFH65863.1| hypothetical protein ARALYDRAFT_887848 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 355

 Score = 42.5 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 25/173 (14%)

Query: 17  TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDK--- 73
           T  ++K     EIG V  +++S               + S E L+ HG+  + ++D+   
Sbjct: 75  TLFNAKG----EIGGVWEINFSNFGDPSDT-----RNEISIEFLRRHGLDLQKIRDEGVD 125

Query: 74  -------PSFSSIF--SEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD-PSR 122
                  P   ++F   +  +F   Q A   A+     + G +         + +    +
Sbjct: 126 MFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNNGKLPETHGEFATEVVKVFGQ 185

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + DT  +A        +  L+ L +   IT   R+ H A  DS + + V+IK+
Sbjct: 186 VYDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHH-AGSDSLMTALVFIKL 237


>gi|224068807|ref|XP_002302830.1| predicted protein [Populus trichocarpa]
 gi|222844556|gb|EEE82103.1| predicted protein [Populus trichocarpa]
          Length = 349

 Score = 42.5 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 64/201 (31%), Gaps = 33/201 (16%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77
           G D   D    +  V+  +       F  ++ P          ++ G+T+E L++  S  
Sbjct: 143 GTDGSLDLCARVCLVDEDENII----FHTYVQPQSAVTDYR-YEITGLTEEHLRNSKSHK 197

Query: 78  SIFSEFWDFF------------NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            +     +              + +    + H           +L+R   D L  +    
Sbjct: 198 EVQDRILEILYNGESARRLMSDSGKARLLVGH-----------DLKR-GLDCLRINYPGH 245

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFG 184
            L    +  P  + +L S   +Y I           +D   +  +Y +M     Q    G
Sbjct: 246 LLRDTAKYRPLLKTNLVSHSLKYDIQTGEHDP---YVDCVSVMRLYKRMRAQDHQGKGIG 302

Query: 185 FKTNEDRFFKEEKKTVPNISL 205
              ++  F  ++ + + N++ 
Sbjct: 303 TPDSDSGFESQKAEELENMTP 323


>gi|29348669|ref|NP_812172.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340574|gb|AAO78366.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
          Length = 949

 Score = 42.5 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 32/141 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ETTG +              +D      +F +          P+  +      
Sbjct: 377 KILSLDTETTGTEP-------------MDAELVGMSFSITENQAFYVPVPDNRE------ 417

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LK       I +EF   F  +N+  +  N K+D+  +     ++           DT+
Sbjct: 418 EALK-------IVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALF------DTM 464

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P  R+ ++ L + Y
Sbjct: 465 IAHYVLQPELRHGMDYLAEIY 485


>gi|212712317|ref|ZP_03320445.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM
           30120]
 gi|212685063|gb|EEB44591.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM
           30120]
          Length = 685

 Score = 42.5 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 82  EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDL 141
           E     ++ N    AHN+ FD   +N    +I     D SR  DT+  A          L
Sbjct: 56  ELKQALSDPNTIIYAHNSHFDRTMLNHSGIKI-----DVSRWRDTMVQA--LAHGLPGAL 108

Query: 142 NSLCKRYGITIS 153
            +LC+  G+ + 
Sbjct: 109 GALCEVLGVPLD 120


>gi|146422161|ref|XP_001487022.1| hypothetical protein PGUG_00399 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146388143|gb|EDK36301.1| hypothetical protein PGUG_00399 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 288

 Score = 42.5 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 13/115 (11%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNS---PEALKLH--- 63
            D E TGL+   D IIEI  +    +     +  ++  +              +  H   
Sbjct: 83  IDCEMTGLNVYEDHIIEICCIITDGHMNIIDSQGYESTIYYPKEVLDSMNEWCVDQHGKS 142

Query: 64  GITDEFLKDKP-SFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRI 113
           G+T + L++   +   +  E  ++              ++   D  F+N E  R+
Sbjct: 143 GLTAKVLENTDRTLEKVQDELLEYIKRFVEPNKGIMAGNSIHMDKFFMNREFPRV 197


>gi|296213310|ref|XP_002807211.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic
           subunit A-like [Callithrix jacchus]
          Length = 2182

 Score = 42.5 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ +   ++   Y  TNR      +        PE    
Sbjct: 272 LAFDIETTKLPLKFPDAETDQIMMVSYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 330

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKD---- 116
                  + ++P  + +   +++   E +    + +N   FD  F+ A            
Sbjct: 331 ----PFCVFNEPDEAHLIQRWFEHVQETRPTVMVTYNGDFFDWPFVEARAAVHGLSMQQE 386

Query: 117 -----------PLDPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 387 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 446

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 447 MATEQPQTLATYSVSDAVATYYLYMKYV 474


>gi|254574322|ref|XP_002494270.1| Putative protein of unknown function [Pichia pastoris GS115]
 gi|238034069|emb|CAY72091.1| Putative protein of unknown function [Pichia pastoris GS115]
          Length = 316

 Score = 42.5 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 54/137 (39%), Gaps = 17/137 (12%)

Query: 92  AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT 151
              + HN   D+  +           +    IIDT  +   +  +S+++L  + +R G+ 
Sbjct: 187 VALVGHNLIGDLKTLKNA-----GITIPILPIIDTRELWLNQVNTSKSNLKYILRRLGLP 241

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF--------FKEEKKTVPNI 203
             H   H A  D++    +   + +  + ++     +E+ +          +  K +P  
Sbjct: 242 --HSFLHNAANDAYYT--LLASLKLAQTNVSLNLLYSEEEWEIPRKTSNSNDFPKPLPQD 297

Query: 204 SLLKRDKPLFTRITKEE 220
               RD+ + +++ +EE
Sbjct: 298 IHQLRDRLIRSKLVREE 314


>gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
 gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549]
 gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
          Length = 897

 Score = 42.5 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 27/142 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET  L++    ++ +        +        ++    R                +
Sbjct: 323 AFDTETDSLNTYEANLVGLSFCAKEGRA-------FYIPLQHRYL-------------GV 362

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +     +  +    F +     +AHN KFD   ++     IN       ++ DT+ +A
Sbjct: 363 PQQLELGFVLDKLKRLFADSKKVKVAHNFKFDEKVLSKYAIEING------KVDDTMIMA 416

Query: 131 RRKHPSSRNDLNSLCK-RYGIT 151
                S ++D++SL K   GI 
Sbjct: 417 YVLKSSGKHDMDSLSKEHLGIE 438


>gi|321470748|gb|EFX81723.1| hypothetical protein DAPPUDRAFT_92597 [Daphnia pulex]
          Length = 185

 Score = 42.5 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 49/170 (28%), Gaps = 22/170 (12%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS---PEALK 61
           + R +  D+E TGLD   D I+E    +   D +       + +               K
Sbjct: 9   RNRIVWMDLEMTGLDETKDYILEAACLITDQDLNIVAEGPNIIINQPDSILDGMGEWCKK 68

Query: 62  LH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRIN 114
            H   G+T+       S      +  DF              ++   D  F+   + ++ 
Sbjct: 69  THGESGLTEACRNSNISVEEAQEQLVDFIGRYTNPGECPLAGNSIGEDKRFLYKYMPKLI 128

Query: 115 KDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                    + T+  + RR +P                      H A+ D
Sbjct: 129 NHLHYRIIDVSTIKELGRRWNP----------DVLKNAPPKSLTHRAMDD 168


>gi|291539042|emb|CBL12153.1| DNA polymerase family B, exonuclease domain [Roseburia intestinalis
           XB6B4]
          Length = 134

 Score = 42.5 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 36/121 (29%), Gaps = 25/121 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FDIETTG  +    +  IG     +       F                        F
Sbjct: 26  LFFDIETTGFSAARTSLYLIGCAARKENLLIVDQF------------------------F 61

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIIDTLS 128
            +     S +   F D+    +     +   FD+ ++  + Q+    +P      +D   
Sbjct: 62  AETPADESDVLHAFLDYLQNFDTIITFNGIGFDIPYLTNKCQKYKIPEPFSAYEYVDIYK 121

Query: 129 I 129
           +
Sbjct: 122 M 122


>gi|300780873|ref|ZP_07090727.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC
           33030]
 gi|300532580|gb|EFK53641.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC
           33030]
          Length = 389

 Score = 42.5 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRN 139
               DF    ++  + +N  FD   ++          +        L+ AR        +
Sbjct: 140 EALADFIG--DSPLVGYNGYFDASALHYA------GLVSDLTFACVLTQARAAELDVPNH 191

Query: 140 DLNSLCKRYGITISHRSKHGALL 162
            L++L   +G+     S   AL 
Sbjct: 192 KLDTLADFFGVDADPASVMNALA 214


>gi|123440753|ref|YP_001004745.1| oligoribonuclease [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|166216592|sp|A1JIQ8|ORN_YERE8 RecName: Full=Oligoribonuclease
 gi|122087714|emb|CAL10499.1| oligoribonuclease [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 181

 Score = 42.5 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 61/190 (32%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           + +N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MAENQNNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPV 45

Query: 60  LKLH------GITD-------------EFLKDKPSFSSIFSEF--WDFFNEQ----NAEW 94
           L +H      G+ D             E +K  P F+   +E    +F  +      +  
Sbjct: 46  LAVHQSDEQLGLMDEWNVRTHTGSGLVERVKASP-FNDHDAELQTIEFLKQWVPAGTSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P        L         
Sbjct: 105 CGNSVGQDRRFLFRYMPELEAYFHYRYLDVSTLKELARRWKPEI------LA-----GFK 153

Query: 154 HRSKHGALLD 163
            ++ H AL D
Sbjct: 154 KQNTHQALDD 163


>gi|268572969|ref|XP_002641462.1| Hypothetical protein CBG13331 [Caenorhabditis briggsae]
 gi|187028892|emb|CAP32140.1| hypothetical protein CBG_13331 [Caenorhabditis briggsae AF16]
          Length = 338

 Score = 42.5 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 58/152 (38%), Gaps = 24/152 (15%)

Query: 27  IEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFW 84
           +E+  V L+D        TF   + P     S       GIT++ L +  +F +   + +
Sbjct: 193 LEVARVSLVDMKGRVILDTF---VLPQYEIVSLNTT-FSGITEKDLSEAITFEACRLQLF 248

Query: 85  DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR---RKHPSSRNDL 141
            F N +    + H+ + D+  +           L    +IDT  +     ++    +  L
Sbjct: 249 QFINSE-TLLVGHSLESDLKALR----------LIHHNVIDTSVLFMSVDQRGEFKKLSL 297

Query: 142 NSLCKRY---GITISHRSKHGALLDSHLLSDV 170
            +L   Y    I  + ++ H ++ DS    ++
Sbjct: 298 QNLAVIYLQKEIQ-TQKTGHSSVEDSMTCLEL 328


>gi|261342826|ref|ZP_05970684.1| oligoribonuclease [Enterobacter cancerogenus ATCC 35316]
 gi|288314868|gb|EFC53806.1| oligoribonuclease [Enterobacter cancerogenus ATCC 35316]
          Length = 181

 Score = 42.5 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 57/190 (30%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  ++   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSADENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 45

Query: 60  LKLHGITDEFLK-----------------------DKPSFSSIFS-EFWD-FFNEQNAEW 94
           + +H  +DE L                             + + + EF   +  E  +  
Sbjct: 46  IAVHQ-SDEQLALMDEWNVRTHTGSGLVDRVKASTQGDREAELATLEFLKQWVPEGKSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+           
Sbjct: 105 CGNSIGQDRRFLFKYMPELESYFHYRYLDVSTLKELARRWKPEI---LD--------GFK 153

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 154 KQGTHQAMDD 163


>gi|261338128|ref|ZP_05966012.1| oligoribonuclease [Bifidobacterium gallicum DSM 20093]
 gi|270276756|gb|EFA22610.1| oligoribonuclease [Bifidobacterium gallicum DSM 20093]
          Length = 219

 Score = 42.5 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 26/170 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP---EALKLH 63
           R I  D E TGLD  +D + E+  V    + +  +      + P+             +H
Sbjct: 16  RLIWIDCEMTGLDIFHDELCEVSVVPTDFELNVLDEGIDFVIKPSKDAVDHMNDFVRAMH 75

Query: 64  ---GITDE-----FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRIN 114
              G+  E      +K+     ++      F  E     +A N+   D  F++  +  + 
Sbjct: 76  TRSGLITEWETGMDVKEAEL--AVIDYVKKFTPEGVKPLLAGNSIGSDKKFLDRYMPGLM 133

Query: 115 KDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +        + TL  +ARR +P          + Y    +    H AL D
Sbjct: 134 EHLHYRVVDVSTLKELARRWYP----------QVYMNRPAKNGGHRALAD 173


>gi|319776026|ref|YP_004138514.1| oligoribonuclease [Haemophilus influenzae F3047]
 gi|317450617|emb|CBY86837.1| oligoribonuclease [Haemophilus influenzae F3047]
          Length = 182

 Score = 42.5 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 29/177 (16%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---------NRTFQVF--LCP 50
           +  +K   I  D+E TGLD + +RIIEI  +                 +++ ++   +  
Sbjct: 1   MSFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMND 60

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
             +K   E   +  I    L ++ +          +  +  +    ++   D  F+   +
Sbjct: 61  WCQKTHSENGLIERIKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGALLD 163
             +        R +D             + L  L  R+   I       + H AL D
Sbjct: 121 PDL--ADYFHYRHLDV------------STLKELAARWKPEILESFKKENTHLALDD 163


>gi|307329382|ref|ZP_07608544.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
 gi|306884916|gb|EFN15940.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
          Length = 92

 Score = 42.5 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKR--YGITISHRSKHGALLDSHLLSDVYI 172
           R++DTL +A+  +    R  L++L K     +  +   +H A  D++  + + I
Sbjct: 26  RVLDTLRLAKATYQDLPRYSLDALIKHTAPDLAAAPAQRHRATYDAYATAQLLI 79


>gi|223042138|ref|ZP_03612309.1| oligoribonuclease [Actinobacillus minor 202]
 gi|240947963|ref|ZP_04752389.1| oligoribonuclease [Actinobacillus minor NM305]
 gi|223017077|gb|EEF15518.1| oligoribonuclease [Actinobacillus minor 202]
 gi|240297719|gb|EER48180.1| oligoribonuclease [Actinobacillus minor NM305]
          Length = 181

 Score = 42.5 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 60/182 (32%), Gaps = 39/182 (21%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNGR 53
           + ++K   I  D+E TGLD + +RIIEI  +                 +     L     
Sbjct: 1   MSQDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVLAIKQSDELL----A 56

Query: 54  KNSPEALKLH---GITDEFLKDKPSFSSIFS----EFWDFFNEQNA-EWIAHNAKFDVGF 105
           K S   +K H   G+  E +K+             +F   +  + A     ++   D  F
Sbjct: 57  KMSDWCVKTHTENGLI-ERVKNSKLTERAAELQTIDFLKRWVPKGASPICGNSVPQDKRF 115

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGAL 161
           +   +  +        R +D             + L  L  R+   I      R+ H AL
Sbjct: 116 LYKYMPDL--ADYFHYRHLDV------------STLKELANRWKPEILTQFKKRNTHLAL 161

Query: 162 LD 163
            D
Sbjct: 162 DD 163


>gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
 gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
          Length = 957

 Score = 42.5 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 20/155 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLCPNGRK 54
           + N+ + +  D ET  LDS +  ++ I             L + +     QV L P    
Sbjct: 351 KINQAKLVAVDTETDSLDSMSANLVGISFGLANGEACYIPLTHKE-----QVTLEPQQSD 405

Query: 55  NSPEALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
              E  +   IT  E  K++ + ++  +E        + + I  N K+D+        ++
Sbjct: 406 LFAEPTEAETITSFELAKNQLNLTACVTELKPLLENADVKKIGQNIKYDLTIFANHGVQV 465

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                      DT+  +   + + R++++ L +RY
Sbjct: 466 EGVAF------DTMLESYTLNSTGRHNMDELAERY 494


>gi|311279142|ref|YP_003941373.1| exodeoxyribonuclease VIII [Enterobacter cloacae SCF1]
 gi|308748337|gb|ADO48089.1| exodeoxyribonuclease VIII [Enterobacter cloacae SCF1]
          Length = 738

 Score = 42.5 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 53/189 (28%), Gaps = 59/189 (31%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH-------- 63
            D+ET G +  +  I+ IGAV              F  P+     PE  K+         
Sbjct: 558 LDVETMGSNP-DAPIVSIGAV--------------FFNPDTGVCGPEFYKVISLESAMAS 602

Query: 64  -GITDE-----------------FLKDKPSFSSIFSEFWDFF-----NEQNAEWI-AHNA 99
            GI D                   + D         +F +F          +  +  + A
Sbjct: 603 GGIPDASTIIWWLKQSSEARAAIVVDDAIPLDDALLQFNEFISENAAGSAGSVQVWGNGA 662

Query: 100 KFDVGFINAELQRINK---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
            FD   +    +R            R + T+    +    +         RY I      
Sbjct: 663 TFDNVLMRRSYERNGIVCSWKFFNDRDVRTIVELGKAVGINP--------RYSIPFEG-D 713

Query: 157 KHGALLDSH 165
           KH AL D+ 
Sbjct: 714 KHNALADAR 722


>gi|190570246|ref|NP_001121995.1| DNA polymerase epsilon catalytic subunit A [Danio rerio]
 gi|169145721|emb|CAQ14243.1| novel protein similar to vertebrate polymerase (DNA directed),
           epsilon (POLE) [Danio rerio]
          Length = 2284

 Score = 42.5 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 74/209 (35%), Gaps = 49/209 (23%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEAL-K 61
           + FDIETT L     D++ D+I+ I   ++   +  TNR      +        PE    
Sbjct: 271 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGFLITNREIVSEDIEDFEFTPKPEYEGP 330

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKD--- 116
                   + ++P  +S+   +++  +E +   ++ +N   FD  F+ A   ++      
Sbjct: 331 FT------IFNEPDEASLIQRWFEHVHETKPNIFVTYNGDFFDWPFVEARAAQLGLSMHR 384

Query: 117 ------------PLDPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKH 158
                           +  +D L   +R    P   ++L +  K + G   + +      
Sbjct: 385 EIGFQKDNQGEYKASQAIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEEMC 444

Query: 159 G------------ALLDSHLLSDVYIKMM 175
                        ++ D+     +Y+K +
Sbjct: 445 RMATEEPQTLATYSVSDAVATYYLYMKYV 473


>gi|28572517|ref|NP_789297.1| oligoribonuclease [Tropheryma whipplei TW08/27]
 gi|81839179|sp|Q83HW9|ORN_TROW8 RecName: Full=Oligoribonuclease
 gi|28410649|emb|CAD67035.1| oligoribonuclease [Tropheryma whipplei TW08/27]
          Length = 184

 Score = 42.5 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 34/169 (20%)

Query: 12  FDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGR---KNSPEALKLH---G 64
            D E TGL+ + D ++E+   V   D    +    V + P+            ++H   G
Sbjct: 13  VDCEMTGLNPERDELLEVAVIVTDKDLLPLDEGVNVVVSPSSEALGAMDNYVARMHRVSG 72

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           + DE L +    S   +   ++  +          ++   D  FI   +  ++   +   
Sbjct: 73  LLDE-LSNGVPVSEAQAMVKEYITKHIKTGGIMSGNSIATDRLFITRYMPDVH--AILHY 129

Query: 122 RIIDT-------LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           R+ID        +  A   +  + N               +  H A+ D
Sbjct: 130 RMIDVSSIKELAVRWAPEIYSGAPNK--------------KGGHRAMAD 164


>gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 927

 Score = 42.5 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 30/149 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETT LD     I+ +                  + P      P A   H  +   
Sbjct: 353 VALDTETTSLDELRAEIVGL---------------SFSVEPGAAAYIPLA---H--SGPD 392

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
             ++    ++      +  + +   +  + K+D           N D      + DT+  
Sbjct: 393 APEQLPLDAVLERLKPWLEDGSRAKLGQHVKYDRHVF------ANHDIGVRGYVHDTMLQ 446

Query: 130 ARRKHPSSRNDLNSLCKRY----GITISH 154
           +        ++L SL +R+    GI+   
Sbjct: 447 SYVLEVHKPHNLASLAERHTGRTGISYED 475


>gi|226357429|ref|YP_002787168.1| DNA-directed DNA polymerase (DNA-dependent DNA polymerase, DNA
           polymerase II) [Deinococcus deserti VCD115]
 gi|226319419|gb|ACO47414.1| putative DNA-directed DNA polymerase (DNA-dependent DNA polymerase,
           DNA polymerase II) [Deinococcus deserti VCD115]
          Length = 765

 Score = 42.5 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 48/169 (28%), Gaps = 53/169 (31%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD+ETT L     RI  I   +              L    R+ + EA            
Sbjct: 152 FDLETTSLTPDTGRIFMIAVRDTRGLR-------TLL--EARRPAQEA------------ 190

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWI-AHNA-KFDVGFINAELQRINKD------------- 116
                  +         E++ + I  HN  +FD+ F++   Q                  
Sbjct: 191 ------DMIRSLVQLIRERDPDVIENHNIHRFDLPFLHYRAQVHGIPLNFGRTGGTPEIW 244

Query: 117 ---------PLDPSRII-DTLSIARRKHPSSRNDLNSLCKRYGITISHR 155
                     L   R I DTL   RR        L +  + +G+    R
Sbjct: 245 QVSDGSRQQWLCSGREIMDTLDAVRRLG-LPSAGLKAAAQHFGLAPEGR 292


>gi|160883388|ref|ZP_02064391.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
 gi|156111108|gb|EDO12853.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
          Length = 949

 Score = 42.5 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 32/141 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ETTG +              +D      +F +       +N    + +     
Sbjct: 377 KILSLDTETTGTEP-------------MDAELVGMSFSI------AENEAFYVPV----- 412

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
               D+     I +EF   F  +N+  +  N K+D+  +      +           DT+
Sbjct: 413 --PSDQDKALKIVNEFRPVFENENSLKVGQNIKYDMIVLQNYGATVKGPLF------DTM 464

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P  R+ ++ L + Y
Sbjct: 465 IAHYVLQPELRHGMDYLAEIY 485


>gi|321265778|ref|XP_003197605.1| ribonuclease H [Cryptococcus gattii WM276]
 gi|317464085|gb|ADV25818.1| Ribonuclease H, putative [Cryptococcus gattii WM276]
          Length = 656

 Score = 42.5 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 70/212 (33%), Gaps = 32/212 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D E   +    D   E+  + ++D++     F   + P G        +  GIT E
Sbjct: 304 ILAIDCEMV-VSKDGD---ELARISVIDFNSGKNVFDELVLPPGEILDYR-TQWSGITAE 358

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWI-------AHNAKFDVGFINAELQRINKDPLDPS 121
            L    S +   S   D      +  I        H+ + D+  +           +   
Sbjct: 359 RLS---STTHTISSIQDLLLSGPSPLITPHTILLGHSLECDLNVLR----------IRHP 405

Query: 122 RIIDTLSIARR-KHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVG 177
             IDT  I +  + P  +  L  L +++    I +   + H +  D+    D+ +KM + 
Sbjct: 406 LCIDTALIYKHPRGPPFKPGLKWLAQKWLQRDIQV-GENGHDSEEDALACVDL-LKMKLA 463

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
               +FG   N      E      + S   R 
Sbjct: 464 NGP-DFGDSINNMEPIVERIGRYQDNSPESRK 494


>gi|16273602|ref|NP_439857.1| oligoribonuclease [Haemophilus influenzae Rd KW20]
 gi|260581056|ref|ZP_05848878.1| oligoribonuclease [Haemophilus influenzae RdAW]
 gi|1176352|sp|P45340|ORN_HAEIN RecName: Full=Oligoribonuclease
 gi|1574570|gb|AAC23360.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092296|gb|EEW76237.1| oligoribonuclease [Haemophilus influenzae RdAW]
          Length = 182

 Score = 42.5 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 29/177 (16%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---------NRTFQVF--LCP 50
           +  +K   I  D+E TGLD + +RIIEI  +                 +++ ++   +  
Sbjct: 1   MSFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMND 60

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
             +K   E   +  I    L ++ +          +  +  +    ++   D  F+   +
Sbjct: 61  WCQKTHSENGLIERIKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGALLD 163
             +        R +D             + L  L  R+   I       + H AL D
Sbjct: 121 PDL--ADYFHYRHLDV------------STLKELAARWKPEILEGFKKENTHLALDD 163


>gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
 gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
          Length = 902

 Score = 42.5 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 64/200 (32%), Gaps = 54/200 (27%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +    +   FD ETT  ++   +++ +                  + P+     P   
Sbjct: 317 MKKLADAKVFAFDTETTDFNAIQAKLVGV---------------SFAVSPHEAAYVPLGH 361

Query: 61  KLHGITDEFLKDKPSF---SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              G         P+      +  +      + N   I  N K+D   +        +  
Sbjct: 362 DYTG--------APAQLDKEEVLRKLKPLLEDPNKTIICQNLKYDAEVL------AKEGL 407

Query: 118 LDPSRIIDTLSIARRKHPSS-RNDLNSLCKRY-----------------GITISHRSKHG 159
              ++  DTL  +   + SS R+DLN+L  +Y                  I+ +H +   
Sbjct: 408 TIRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDK 467

Query: 160 ALL----DSHLLSDVYIKMM 175
           A      D+ +   ++ K+M
Sbjct: 468 ATAYAAEDADVTLQLHHKLM 487


>gi|170766878|ref|ZP_02901331.1| oligoribonuclease [Escherichia albertii TW07627]
 gi|170124316|gb|EDS93247.1| oligoribonuclease [Escherichia albertii TW07627]
 gi|315617577|gb|EFU98183.1| exonuclease family protein [Escherichia coli 3431]
          Length = 181

 Score = 42.5 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 45

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 46  IAVHQ-SDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P        L        +
Sbjct: 105 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI------LA-----GFT 153

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 154 KQGTHQAMDD 163


>gi|158428766|pdb|2IGI|A Chain A, Crystal Structure Of E. Coli Oligoribonuclease
 gi|158428767|pdb|2IGI|B Chain B, Crystal Structure Of E. Coli Oligoribonuclease
          Length = 180

 Score = 42.5 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 55/188 (29%), Gaps = 55/188 (29%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALK 61
            N+   I  D+E TGLD + DRIIEI                  +         E   + 
Sbjct: 2   ANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPTIA 46

Query: 62  LHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEWIA 96
           +H  +DE L                          D+ +  +       +     +    
Sbjct: 47  VHQ-SDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICG 105

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHR 155
           ++   D  F+   +  +          + TL  +ARR  P     L+          + +
Sbjct: 106 NSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFTKQ 154

Query: 156 SKHGALLD 163
             H A+ D
Sbjct: 155 GTHQAMDD 162


>gi|157963361|ref|YP_001503395.1| oligoribonuclease [Shewanella pealeana ATCC 700345]
 gi|157848361|gb|ABV88860.1| Exonuclease RNase T and DNA polymerase III [Shewanella pealeana
           ATCC 700345]
          Length = 181

 Score = 42.5 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 23/164 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNG-RKNSPEALKLH---G 64
            D+E TGL+   DRIIEI  +              F +               K H   G
Sbjct: 11  VDLEMTGLEPDVDRIIEIATIVTDKELNIIAQGPVFAIHQSDEQLALMDDWNQKHHGQSG 70

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           + D       +     +E   F ++      +    ++   D  F+N  +  +       
Sbjct: 71  LVDRVRASTINEEQAIAETIAFLSQYVPAGASPMCGNSIGQDRRFLNRYMPELEGYFHYR 130

Query: 121 SRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + T+  + RR  PS+               S ++ H AL D
Sbjct: 131 NIDVSTIKELVRRWEPSAMEG-----------FSKKNTHQALQD 163


>gi|71274937|ref|ZP_00651225.1| Exonuclease [Xylella fastidiosa Dixon]
 gi|71898826|ref|ZP_00680994.1| Exonuclease [Xylella fastidiosa Ann-1]
 gi|170729792|ref|YP_001775225.1| oligoribonuclease [Xylella fastidiosa M12]
 gi|71164669|gb|EAO14383.1| Exonuclease [Xylella fastidiosa Dixon]
 gi|71731412|gb|EAO33475.1| Exonuclease [Xylella fastidiosa Ann-1]
 gi|167964585|gb|ACA11595.1| oligoribonuclease [Xylella fastidiosa M12]
          Length = 193

 Score = 42.5 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 33/177 (18%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSP----E 58
           ++  R I  D+E TGLD+  D IIEI  V       T+    V    P    + P    E
Sbjct: 9   ESDRRLIWIDLEMTGLDTHRDSIIEIATV------VTDAQLNVLAEGPEFAISHPLNVLE 62

Query: 59  ALK-----LHGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           A+       H  +       +  ++   + +S  +    +     +    ++   D  F+
Sbjct: 63  AMDEWNRNQHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKTGASPMCGNSICQDRRFL 122

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + ++  + +     +  + TL         S + L+ + K         S H AL D
Sbjct: 123 HRQMPCLERYFHYRNLDVSTLKELAGCW--SPSILDGVVK--------TSNHTALSD 169


>gi|308470741|ref|XP_003097603.1| hypothetical protein CRE_14869 [Caenorhabditis remanei]
 gi|308239904|gb|EFO83856.1| hypothetical protein CRE_14869 [Caenorhabditis remanei]
          Length = 608

 Score = 42.5 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 54/176 (30%), Gaps = 22/176 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E       N  +  I  ++    +  +     F+ P G   +    +  GIT + ++
Sbjct: 226 VDCEMCETTHANRELTRISLIDEKQNTILD----TFVKPRG-DITDYVTRYSGITAKMME 280

Query: 72  DKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              +    +     +     +A  + H+ + D+  +                 +      
Sbjct: 281 GVTTTLEDVQRAIQNLL-PPDAILVGHSLEHDLSAMKMTH--------PFCLDVCHSLNY 331

Query: 131 RRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                 +RN L SL + + G  I     H +  D+      +  + +   +I  G 
Sbjct: 332 TNNVFENRNSLKSLTEMFLGEQIQTEYGHCSYEDA------WAALRLAQLKIQEGI 381


>gi|331665829|ref|ZP_08366723.1| oligoribonuclease [Escherichia coli TA143]
 gi|331056880|gb|EGI28874.1| oligoribonuclease [Escherichia coli TA143]
          Length = 181

 Score = 42.5 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSANENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 45

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 46  IAVHQ-SDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 105 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 153

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 154 KQGTHQAVDD 163


>gi|126323907|ref|XP_001377829.1| PREDICTED: similar to polymerase (DNA directed), epsilon
           [Monodelphis domestica]
          Length = 2268

 Score = 42.5 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   V+   Y  TNR      +        PE    
Sbjct: 254 LAFDIETTKLPLKFPDAETDQIMMISYMVDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 312

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKDPL-- 118
                  + ++P  + +   +++   E +    + +N   FD  F+ A            
Sbjct: 313 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMHQE 368

Query: 119 -------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSKHG 159
                             +D L   +R    P   ++L +  K + G   + +       
Sbjct: 369 IGFQKDSQGEYKSSQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEDMCR 428

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 429 MATEEPQTLATYSVSDAVATYYMYMKYV 456


>gi|258510447|ref|YP_003183881.1| exonuclease-like protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477173|gb|ACV57492.1| exonuclease-like protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 423

 Score = 42.5 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 27/150 (18%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R + +D+E TGL      +  + AV        +  F+V            A        
Sbjct: 107 RMVFYDVEATGLGHGGGTVPFLHAVGYFA----DDEFRV------------AQY------ 144

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDT 126
            F+ D  + +++     D F    +  + +N   +D              P +P+  +D 
Sbjct: 145 -FVPDYAAEAAVVRLLADRFGRDGSVMVTYNGKSYDWPLFVNRCVLYGLRPPEPA-HLDL 202

Query: 127 LSIARRKHPS--SRNDLNSLCKRYGITISH 154
           L  ARR       R  L  +    G+    
Sbjct: 203 LHPARRLWKGVVGRMKLADVEALLGVRRDG 232


>gi|284990013|ref|YP_003408567.1| Exonuclease RNase T and DNA polymerase III [Geodermatophilus
           obscurus DSM 43160]
 gi|284063258|gb|ADB74196.1| Exonuclease RNase T and DNA polymerase III [Geodermatophilus
           obscurus DSM 43160]
          Length = 225

 Score = 42.5 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 27/167 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLH------G 64
            D E TGLD   D++IE+   V   + +  +    + +  +          +       G
Sbjct: 11  IDCEMTGLDLTRDKLIEVAVLVTDSELNVLDPGLDLVISADDAALEGMVEVVTEMHAKSG 70

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +T+       + +    +   +        + A    ++   D GF+  ++  +  D   
Sbjct: 71  LTEAVRASTLTVAEAEQQLLAYVKRFVPERRTAPLCGNSIGTDRGFLARDMPEL--DDHL 128

Query: 120 PSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             R+ID  S+   ARR  P          + Y         H AL D
Sbjct: 129 HYRMIDVSSVKELARRWFP----------RVYFAQPQKGLAHRALAD 165


>gi|254448875|ref|ZP_05062331.1| oligoribonuclease [gamma proteobacterium HTCC5015]
 gi|198261565|gb|EDY85854.1| oligoribonuclease [gamma proteobacterium HTCC5015]
          Length = 185

 Score = 42.5 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 21/141 (14%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA--- 59
           + +    I  D+E TGLD+ ND IIEI  +                 P    + P+A   
Sbjct: 6   QYDDDNLIWIDLEMTGLDTVNDEIIEIATIVTDKALNVIAE-----GPMLAIHQPDAVMD 60

Query: 60  ------LKLH---GIT----DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
                  + H   G+T    +  +  + +          +   + +    ++   D  F+
Sbjct: 61  GMDEWNTRQHGQSGLTERVKNSDVNMQEAERQTIEFLEQYVGARKSPMCGNSICQDRRFM 120

Query: 107 NAELQRINKDPLDPSRIIDTL 127
             ++ ++       +  + TL
Sbjct: 121 ARQMPQLEAYFHYRNLDVSTL 141


>gi|332995058|gb|AEF05113.1| hypothetical protein ambt_18085 [Alteromonas sp. SN2]
          Length = 176

 Score = 42.5 bits (99), Expect = 0.056,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 18/177 (10%)

Query: 1   MIRKNKM-RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SP 57
           MIR + +   I+ DIE +GL ++    IEIG  +       + +F   + P    N  S 
Sbjct: 1   MIRHSLIHPPIILDIEASGL-AEPSYPIEIGFYKSD-----SDSFCTLIKPAAHWNYWSA 54

Query: 58  EALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           EA KLHG++ + +  +  S  +I  E       +     +     D  + N         
Sbjct: 55  EAEKLHGLSQDIITHRGRSTRAIAHELNRLLAGK--TVFSDGWVVDFTWFNKLFYDAGIA 112

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                  I+T+          +   + + +  GI     ++H A  D+  +   +++
Sbjct: 113 STFRLSAIETIMTEAMIDIWDQTKQDIIAE-LGI-----ARHRASTDAKAIQKTWLR 163


>gi|157363023|ref|YP_001469790.1| DNA polymerase I [Thermotoga lettingae TMO]
 gi|157313627|gb|ABV32726.1| DNA polymerase I [Thermotoga lettingae TMO]
          Length = 892

 Score = 42.5 bits (99), Expect = 0.056,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 30/147 (20%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +  K +  V D+ET  L   +  II         +S +  + + +  P   KN P   K 
Sbjct: 312 KIKKSQYFVLDLETDSLSPIDAEII--------GFSISLPSKESYYVPLAHKNGPNVDK- 362

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                          S  +        Q+A+ I  N K+D   +    +    +P+ PS 
Sbjct: 363 --------------KSALNNLKSILENQSAKIIGQNLKYDYSVL----KMHGIEPVRPS- 403

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRY 148
             DT+  A   +P   R +L+ L  ++
Sbjct: 404 -FDTMIAAYLLNPDEKRFNLDELAMKF 429


>gi|12084972|ref|NP_073265.1| hypothetical protein pKDSC50_p41 [Salmonella enterica subsp.
           enterica serovar Choleraesuis]
 gi|60115507|ref|YP_209299.1| hypothetical protein SCV45 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|586926|sp|P37414|YTL1_SALTY RecName: Full=Uncharacterized protein pSLT049
 gi|444032|emb|CAA82633.1| 15 kDa protein similar to coliphage 186 CP81 [Salmonella enterica
           subsp. enterica serovar Typhimurium]
 gi|12060342|dbj|BAB20548.1| orf41 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|16445245|gb|AAL23463.1| putative DNA polymerase III epsilon subunit (3'-5' exonuclease)
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|45359331|gb|AAS58918.1| hypothetical protein pSLT049 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|267990085|gb|ACY86482.1| putative DNA polymerase III epsilon subunit (3'-5' exonuclease)
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|322713012|gb|EFZ04584.1| hypothetical protein SCA50_p44 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|332991504|gb|AEF10486.1| putative DNA polymerase III epsilon subunit (3'-5' exonuclease)
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 138

 Score = 42.5 bits (99), Expect = 0.056,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +  D ETTGLD+   + +EIG V         R F+  L P      P A  +
Sbjct: 74  PVFLDTETTGLDA-GAQALEIGLVNARG----ERIFETRLKPT-VGIDPAAAAV 121


>gi|297518841|ref|ZP_06937227.1| hypothetical protein EcolOP_14453 [Escherichia coli OP50]
          Length = 230

 Score = 42.5 bits (99), Expect = 0.057,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 35/190 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALKLHGITDE 68
            D+ET G +  +  II IGA+            F   +     G     + +K       
Sbjct: 52  IDLETMGKNP-DAPIISIGAIFFDPQTGDIGPEFSKTIDLETAGGVIDRDTIK------W 104

Query: 69  FLK-----------DKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINAELQRI 113
           +LK           D+        +  +F +E + E+      + A FD   +    +R 
Sbjct: 105 WLKQSREAQSAIMTDEIPLDDALLQLREFIDENSGEFFVQVWGNGANFDNTILRRSYERQ 164

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD---- 169
                 P R  +   +          D ++   R  I      +H AL D+   +     
Sbjct: 165 GIP--CPWRYYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDARYQAKYVSV 218

Query: 170 VYIKMMVGGS 179
           ++ K++   +
Sbjct: 219 IWQKLIPSQA 228


>gi|301106098|ref|XP_002902132.1| RNA exonuclease 4 [Phytophthora infestans T30-4]
 gi|262098752|gb|EEY56804.1| RNA exonuclease 4 [Phytophthora infestans T30-4]
          Length = 351

 Score = 42.5 bits (99), Expect = 0.057,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 52/168 (30%), Gaps = 13/168 (7%)

Query: 9   KIVFDIETTG--LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            +  D E  G  L  K   +     V+          +   + P   K +     + GI 
Sbjct: 119 IVGMDCEMVGVGLSGKTSVLARCSIVDYDGNVL----YDKHVRP-VEKVTDFRTHVSGIK 173

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRIID 125
              L+    F+    E       Q+   + H  K D   +     + + +D       + 
Sbjct: 174 SSSLRRAIPFAQCLKEVGKLL--QDKIVVGHALKNDFQALMFSPPKHLIRDTAYYRPYMR 231

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                 + +P S  +L    +  G  I     H ++ D+    ++Y +
Sbjct: 232 RKMNGTKLYPKSLKNLT--AEVLGKQIQTGQ-HDSVEDARATLELYKR 276


>gi|242077442|ref|XP_002448657.1| hypothetical protein SORBIDRAFT_06g030900 [Sorghum bicolor]
 gi|241939840|gb|EES12985.1| hypothetical protein SORBIDRAFT_06g030900 [Sorghum bicolor]
          Length = 606

 Score = 42.5 bits (99), Expect = 0.057,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 21/172 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E        + ++ +  V+     K      + + P+          + G++   L+
Sbjct: 253 IDCEMVLCSDGTEAVVRVCVVD----DKLKAKLDILVNPSKAIADYR-TDITGVSKNDLE 307

Query: 72  DKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              S    +        + +    I H+   D+  +           LD S++IDT  I 
Sbjct: 308 GVTSSLVDVQKSLKRMLS-KGNILIGHSLHRDLCVLK----------LDYSQVIDTAYIF 356

Query: 131 RR--KHPSSRNDLNSLCKR-YGITI-SHRSKHGALLDSHLLSDVYIKMMVGG 178
           +      ++   LNSLCK   G ++      H  L D+    ++ +  +  G
Sbjct: 357 KYANLPTTASPSLNSLCKAILGYSVREEGEPHNCLKDAEAAMNLVLAKLKNG 408


>gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 976

 Score = 42.5 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 77/254 (30%), Gaps = 52/254 (20%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLCPNGRK 54
           +  K   +  D ETTGL++    ++ I             L +  TN +           
Sbjct: 363 KARKQGFLAVDTETTGLNASAVDLVGISMAIAPGQACYIPLRHGATNDS----------- 411

Query: 55  NSPEALKLHG---ITDEFL-KDKP--SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
                + + G    +D+      P   F +  +E    F +     I HN K+D   +  
Sbjct: 412 AVGSGVAVQGGLNFSDDDTPAHYPQLDFETAMAEIKPLFEDPAVLKIGHNLKYDAHVLMR 471

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-----------------GIT 151
              R     L P      LS         R+ ++ L   +                  I 
Sbjct: 472 P--RNGGINLAPVDDTMCLSYVLDGGRVERHSMDYLAGHWLDYTTIKFSDVCGKGAKQIP 529

Query: 152 ISHRSKHGALL----DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNI--SL 205
            S  +   AL     D+ +   ++  M++          +  +R  +     +  +    
Sbjct: 530 FSELAPEAALDYAAEDADITLRLW--MILKPRLAGEKVASVYERLERPLIPVLAQMENYG 587

Query: 206 LKRDKPLFTRITKE 219
           +  D+ +  R++ +
Sbjct: 588 ITVDRSILARMSND 601


>gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
 gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
          Length = 932

 Score = 42.5 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 87/256 (33%), Gaps = 69/256 (26%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET GLD+ +  +I                F   + P      P A        ++L
Sbjct: 356 AFDTETDGLDTLSSNLIG---------------FSFAVAPGEAAYLPVA-------HDYL 393

Query: 71  KDKPSFSS---IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            D P+      + ++      ++ A  +  N KFD   +      +           DT+
Sbjct: 394 -DAPTQLDRNWVLAQLKPLLEDEKALKVGQNLKFDQSMLARYDIELRGIAF------DTM 446

Query: 128 SIARRKHP-SSRNDLNSLCKRY----------------------GITISHRSKHGALLDS 164
             +      + R+D++SL +RY                       I +     + A  D+
Sbjct: 447 LESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIALEQAGPY-AAEDA 505

Query: 165 HLLSDVYIKMMVGGSQINFGFKTNEDRFFKE-EKKTVPNISLLKRDKPLFTRITKEELDE 223
            +   +++ +     Q + G K    R F+E E   +P +S ++R   L   I +  L  
Sbjct: 506 DVTLQLHLVLWPKLQQ-SEGLK----RVFQEIEMPLLPILSRIERTGVL---IDQNILAA 557

Query: 224 HDK----TIQTLGKNA 235
           H K     +  L K A
Sbjct: 558 HSKELTIRLDELEKQA 573


>gi|167998316|ref|XP_001751864.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696962|gb|EDQ83299.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 564

 Score = 42.5 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 62/173 (35%), Gaps = 20/173 (11%)

Query: 47  FLCPNGRKNSPEALKLHGITDEFLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            + P G   +    +  GIT   L D  +  + +  E     + +    I H+ + D+  
Sbjct: 244 LVKP-GNSITNYNTQYSGITAAMLADVTTTLTDVQEEILKLVHAE-TILIGHSVENDLAA 301

Query: 106 INAELQRINKDPLDPSRIIDT--LSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGA 160
           +           +    +IDT  L     + P+ +  L  L  RY    I  S +  H +
Sbjct: 302 LK----------ILHPLVIDTALLYHHPSRGPTRKPALRMLTGRYLKRRIQ-SDKGGHDS 350

Query: 161 LLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
           + D+    D+ +  +  G       K N +   +   +     SL+ R +P+ 
Sbjct: 351 VEDARAAMDLTLLKISKGPGFGKRLKPNFESLIEVLGRHGCRTSLIDR-RPIL 402


>gi|91228387|ref|ZP_01262313.1| oligoribonuclease [Vibrio alginolyticus 12G01]
 gi|91188028|gb|EAS74334.1| oligoribonuclease [Vibrio alginolyticus 12G01]
          Length = 181

 Score = 42.1 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 64/181 (35%), Gaps = 37/181 (20%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEAL 60
           +  +    I  D+E TGLD +  +IIEI ++       T+    +    P    + PE  
Sbjct: 1   MSFSDQNLIWVDLEMTGLDPETHKIIEIASI------VTDSELNILAEGPVLAIHQPE-E 53

Query: 61  KLHGITD------------EFLKD-KPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDV 103
           +L  + D            E +++ + S     ++  +F  +      +    ++   D 
Sbjct: 54  ELVKMDDWCTNTHTASGLVERVRNSQISEQDAVAQTIEFLEKWVPKGASPICGNSIGQDR 113

Query: 104 GFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
            F+   +  + +        + TL  +ARR  P   N             + +  H AL 
Sbjct: 114 RFLYKHMPELEEFFHYRYVDVSTLKELARRWQPEVLNG-----------FTKQGTHLALD 162

Query: 163 D 163
           D
Sbjct: 163 D 163


>gi|78779619|ref|YP_397731.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
 gi|78713118|gb|ABB50295.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
          Length = 976

 Score = 42.1 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 24/147 (16%)

Query: 3   RKNKMRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R  K  +IV  D ET  L+  +  ++ IG        +T+  F +   P G +   E   
Sbjct: 375 RLEKTNEIVSLDTETNSLNPIDAELVGIGLCL---GEETDDLFYI---PLGHQTKKETT- 427

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
                     ++ S   +FS+   +  +   E    N+KFD          +        
Sbjct: 428 ----------NQLSIEEVFSKIRTWIEDPKKEKALQNSKFDRQIFFNHGLDLKGVTF--- 474

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY 148
              DTL      +   ++ L+ +  R 
Sbjct: 475 ---DTLLADYLLNNQEKHGLSEISFRL 498


>gi|118602134|ref|YP_903349.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567073|gb|ABL01878.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 906

 Score = 42.1 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 31/149 (20%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           VFD+ETT LD  N  I+  G V L+D +        ++ P G        +L        
Sbjct: 335 VFDLETTSLDYMNATIV--GWVFLVDKN------SFYV-PVGHDYLNAPKQL-------- 377

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                F  +  +      + +   +  N K+D   +       N          DT+  +
Sbjct: 378 ----DFKDVLDQLKLILEDVSIGKVGQNLKYDAHIL------ANYQIDLQGISDDTMVKS 427

Query: 131 RRKHP-SSRNDLNSLCKRYGITISHRSKH 158
              +  ++R++++ L + Y   ++H++ H
Sbjct: 428 YCLNSVATRHNIDDLSEYY---LNHKTIH 453


>gi|23466268|ref|NP_696871.1| oligoribonuclease [Bifidobacterium longum NCC2705]
 gi|239621653|ref|ZP_04664684.1| oligoribonuclease [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312134015|ref|YP_004001354.1| orn2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482068|ref|ZP_07941092.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689780|ref|YP_004209514.1| oligoribonuclease [Bifidobacterium longum subsp. infantis 157F]
 gi|81753494|sp|Q8G3N5|ORN_BIFLO RecName: Full=Oligoribonuclease
 gi|23327017|gb|AAN25507.1| probable oligoribonuclease [Bifidobacterium longum NCC2705]
 gi|239515528|gb|EEQ55395.1| oligoribonuclease [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291516316|emb|CBK69932.1| Oligoribonuclease (3'->5' exoribonuclease) [Bifidobacterium longum
           subsp. longum F8]
 gi|311773320|gb|ADQ02808.1| Orn2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916427|gb|EFV37825.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|320461116|dbj|BAJ71736.1| oligoribonuclease [Bifidobacterium longum subsp. infantis 157F]
          Length = 216

 Score = 42.1 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 23/169 (13%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP---EALKL 62
           R I  D E TGLD    D ++E+  V    D +  +      + P+ +  +       ++
Sbjct: 16  RLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSEKAVNHMNDFVRQM 75

Query: 63  H---GITDEF---LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           H   G+ +E+   L    +   +      F  E     +A N    D  F++  +  +  
Sbjct: 76  HTRSGLINEWENGLSLAEAEQKVTEYVLRFTPEGVRPLLAGNTIGSDKKFLDHYMPNLMS 135

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                S  + T   +ARR +P            Y         H AL D
Sbjct: 136 HLHYRSVDVSTFKELARRWYP----------AVYENRPPKNGGHRALAD 174


>gi|270010224|gb|EFA06672.1| hypothetical protein TcasGA2_TC009600 [Tribolium castaneum]
          Length = 2191

 Score = 42.1 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 33/165 (20%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEAL-K 61
           + FDIETT L     D++ D+I+ I   ++   +  TNR      +        PE   K
Sbjct: 266 LAFDIETTKLPLKFPDAQTDQIMMISYMIDGQGFLITNREILSSDIEDFEYTPKPEFEGK 325

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKDPLD 119
                   + ++P+  ++  +F+D   + +   ++ +N   FD  F+       + D   
Sbjct: 326 FT------IFNEPNELALIQKFFDHIMDVRPHVFVTYNGDFFDWPFVETRAAVYDLDMKQ 379

Query: 120 ---------------PSRIIDTLSIARR--KHPSSRNDLNSLCKR 147
                          P+  +D L   +R    P   ++L ++ K 
Sbjct: 380 EIGFAKDRNDVYSCRPAIHMDCLCWVKRDSYLPVGSHNLKAVAKA 424


>gi|261254064|ref|ZP_05946637.1| oligoribonuclease [Vibrio orientalis CIP 102891]
 gi|260937455|gb|EEX93444.1| oligoribonuclease [Vibrio orientalis CIP 102891]
          Length = 181

 Score = 42.1 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 50/174 (28%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-----FQVFLCPNGRKNS 56
           +  +    I  D+E TGLD +  ++IEI  +                         +K  
Sbjct: 1   MSFSDQNLIWIDLEMTGLDPETHKVIEIATIVTDSELNILAEGPVLAIHQ-PDAELKKMD 59

Query: 57  PEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAE 109
                 H   G+ D   K          +  +F  +      +    ++   D  F+   
Sbjct: 60  EWCTTTHTGSGLVDRVRKSNIDEQEAVRQTIEFLEKWVPKGKSPICGNSVGQDRRFLYKH 119

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + +        + TL    R+            +  G   + +  H AL D
Sbjct: 120 MAELEEYFHYRYIDVSTLKELTRRWKP---------EVLG-GFTKQGSHLALDD 163


>gi|213022870|ref|ZP_03337317.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
          str. 404ty]
          Length = 43

 Score = 42.1 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 3  RKNKMRKIVFDIETTGLDSKNDRIIEIGAVE 33
          R      +V D+ET G ++K D ++EI A+ 
Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAIT 43


>gi|326536842|ref|YP_004301274.1| hypothetical protein 65p438 [Aeromonas phage 65]
 gi|312263188|gb|ADQ53444.1| conserved hypothetical protein [Aeromonas phage 65]
          Length = 318

 Score = 42.1 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 58/160 (36%), Gaps = 47/160 (29%)

Query: 8   RKIVFDIETT--------------GLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPN 51
           R +V DIET               GL+  +    ++   A +  D  +       ++   
Sbjct: 60  RVLVLDIETAPVLAHVWRLFKTNVGLNMIDQDWYMLSFAA-KWFDSDEII-----YMDQR 113

Query: 52  GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH-N-AKFDVGFINAE 109
             KN  +         + LK       +  E  D      A+ + H N  +FD+  I A 
Sbjct: 114 NAKNVED-------DSDMLK-------VLWELLD-----EADIVLHQNGKRFDIPKIRAR 154

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDL----NSLC 145
           +   N  P    + IDTL IA+R    + N L    ++LC
Sbjct: 155 MIFHNMKPFSGVKHIDTLEIAKRTFGFTSNKLEYMTDTLC 194


>gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87]
 gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87]
          Length = 941

 Score = 42.1 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 43/143 (30%), Gaps = 32/143 (22%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + + FD ETT L+    +++ I                 +  P               
Sbjct: 366 KQKSVCFDTETTSLNPLEAQLVGIAFSWEGGKG--------YYLPFEDNIEKT------- 410

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                        +      FF     E I  N K+D+  ++    ++           D
Sbjct: 411 -----------QQLIELLRPFFESPEIEKIGQNLKYDIKVLDKYGIKVEGPTF------D 453

Query: 126 TLSIARRKHPSSRNDLNSLCKRY 148
           T+      +P  R++++ L + Y
Sbjct: 454 TMIAHYLINPDMRHNMDILAETY 476


>gi|189238915|ref|XP_969200.2| PREDICTED: similar to DNA polymerase epsilon CG6768-PA [Tribolium
           castaneum]
          Length = 2185

 Score = 42.1 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 33/165 (20%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEAL-K 61
           + FDIETT L     D++ D+I+ I   ++   +  TNR      +        PE   K
Sbjct: 266 LAFDIETTKLPLKFPDAQTDQIMMISYMIDGQGFLITNREILSSDIEDFEYTPKPEFEGK 325

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKDPLD 119
                   + ++P+  ++  +F+D   + +   ++ +N   FD  F+       + D   
Sbjct: 326 FT------IFNEPNELALIQKFFDHIMDVRPHVFVTYNGDFFDWPFVETRAAVYDLDMKQ 379

Query: 120 ---------------PSRIIDTLSIARR--KHPSSRNDLNSLCKR 147
                          P+  +D L   +R    P   ++L ++ K 
Sbjct: 380 EIGFAKDRNDVYSCRPAIHMDCLCWVKRDSYLPVGSHNLKAVAKA 424


>gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
 gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
          Length = 913

 Score = 42.1 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 42/137 (30%), Gaps = 26/137 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETT LDS   R++ I                + + P      P A   H      + 
Sbjct: 340 LDTETTSLDSMTARLVGI---------------SLSVKPGFAAYIPLA---HH--PIEVA 379

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
            +     +  +   +      + +  N K+D          +           DTL  + 
Sbjct: 380 KQLPLDHVLKKLKSWLENPAKKKVGQNLKYDSHIFANYHIHL------QGIAHDTLLESY 433

Query: 132 RKHPSSRNDLNSLCKRY 148
                 R+D++SL +R 
Sbjct: 434 VLESHRRHDMDSLSERL 450


>gi|221106125|ref|XP_002162618.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
 gi|221125355|ref|XP_002157133.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 198

 Score = 42.1 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 62/173 (35%), Gaps = 29/173 (16%)

Query: 6   KMRKIVFDIE---TT-GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           K + +  D E   TT GL+     I++     ++D         +++ P          +
Sbjct: 19  KQKVLALDCEMCYTTQGLELTRLTIVDFQLQPMID---------LYVKPTN-PIVDYNTR 68

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
             G+T E L++  +      +       ++   + H+ + D+  +    +++        
Sbjct: 69  FSGVTKEHLQNITTTLEDIQDILLDILHKDTILLGHSLESDLFALKMIHKKV-------- 120

Query: 122 RIIDT--LSIARRKHPSSRNDLNSL-CKRY-GITISHRSKHGALLDSHLLSDV 170
             +DT  +   R  HP  R  L +L       I  +  + H +  D+    ++
Sbjct: 121 --VDTSIVFPHRLGHPFKR-ALRNLMADHLQKIIQNGEAGHDSSEDARACMEL 170


>gi|46111395|ref|XP_382755.1| hypothetical protein FG02579.1 [Gibberella zeae PH-1]
          Length = 707

 Score = 42.1 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 20/168 (11%)

Query: 66  TDEFLKD---KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           TD F+       S S +  +F ++ + +    +A++A+ D   +     R      +   
Sbjct: 530 TDNFIFGETQAISLSGLKKKFLEWQHGRTVIGVAYSARNDYIIL-----RDFGVFFNHIY 584

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            +D           S+  +L  + +  GI  S    H A  D+H      ++ ++G + +
Sbjct: 585 WLDLCQATYLITQQSKAINLREVLELLGIRYS--KLHSAGNDAHFT----MRALMGLAVL 638

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229
           +   +       +        I+  K   PL  R   EEL   ++ + 
Sbjct: 639 DLTNELQYGAHLQPWCGLAARIA--KAPLPLTER---EELKRKERQLA 681


>gi|124026294|ref|YP_001015410.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
 gi|123961362|gb|ABM76145.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
          Length = 986

 Score = 42.1 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 49/145 (33%), Gaps = 17/145 (11%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +  + I  D ETT L+     ++ +G                ++    +    + +++
Sbjct: 380 HTDAKKPIAIDTETTSLNPFKAELVGLGFCFGESLKDIV-----YIPIGHKNKEDDLIEI 434

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           + I      ++     +     D+F+         NAK+D   +      +N        
Sbjct: 435 NQI------NQLKIEEVIFALQDWFSSNENPKTLQNAKYDRLILLRHGIILNGV------ 482

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKR 147
           ++DTL        + ++ L+ +  R
Sbjct: 483 VMDTLLADYICDATLKHSLDEIAYR 507


>gi|332142368|ref|YP_004428106.1| DNA-directed DNA polymerase I [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552390|gb|AEA99108.1| DNA-directed DNA polymerase I [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 289

 Score = 42.1 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 74  PSFSSIF-SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
           P+   +   E            I  N KFD   +  +          PS   DT+++A+ 
Sbjct: 51  PNEIDVLVEELKSLEASNGVRLIGQNTKFDGLILAEKHN------FIPSYYCDTMAMAKG 104

Query: 133 KHPSSRNDLNSLCKRY 148
             P  ++DL+SL KR 
Sbjct: 105 LWPHHKSDLDSLTKRL 120


>gi|66392076|ref|YP_239298.1| possible endodeoxyribonuclease [Xanthomonas phage Xp15]
 gi|62529186|gb|AAX84869.1| possible endodeoxyribonuclease [Xanthomonas phage Xp15]
          Length = 181

 Score = 42.1 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 58/191 (30%), Gaps = 39/191 (20%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGR------ 53
           M RK+    I+ D+ET    +    I+ IGA ++ LD  + +  F   +  +        
Sbjct: 1   MPRKSN--HIMVDLETMDT-AHTAAILSIGACKVDLDTGEISDKFYRVVNCDSSSALGLT 57

Query: 54  ----------KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAK 100
                     K SPEA K+   TD    + P       EF  +         +   + + 
Sbjct: 58  TSSATKSWWDKQSPEARKV--FTDP---NIPVI-QALGEFATYLRIFGVNSVKLWGNGSD 111

Query: 101 FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
           FD   +                         R   + R  L  +           + H A
Sbjct: 112 FDNTILTTAYNLAGSPIPWRFYNN-------RCFRTIRKSLGHMVAE---PAREGTYHNA 161

Query: 161 LLDSHLLSDVY 171
           L D+   + + 
Sbjct: 162 LDDAIYQAKIL 172


>gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 597

 Score = 42.1 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 45/153 (29%), Gaps = 43/153 (28%)

Query: 6   KMRKIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K R I  D ETTGLD   +RI  I+I A                  P       +   L 
Sbjct: 33  KARVIGIDTETTGLDPLTERIRLIQIAA------------------PQHPVIIVDLAAL- 73

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                  +  P                +A  +  N KFD   +     R           
Sbjct: 74  ----ADSELSP---------LKALLNSSALKVFQNGKFDWQVLEMAGLR------PSGPF 114

Query: 124 IDTLSIARRKHPSSR--NDLNSLC-KRYGITIS 153
            D +  ++      +  +DL SL  +  GI + 
Sbjct: 115 FDVMLASQVLRSGLKKDHDLQSLTFEFLGIKLD 147


>gi|295098321|emb|CBK87411.1| Oligoribonuclease (3'->5' exoribonuclease) [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 181

 Score = 42.1 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 25/175 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFL-CPNGRKNSP 57
           +  ++   I  D+E TGLD + DRIIEI  +             T  V            
Sbjct: 1   MSADENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDDQLALMDE 60

Query: 58  EALKLH---GITDEFLKD---KPSFSSIFS-EFWD-FFNEQNAEWIAHNAKFDVGFINAE 109
             ++ H   G+  E +K        + + + EF   +     +    ++   D  F+   
Sbjct: 61  WNVRTHTGSGLV-ERVKASSLGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKY 119

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  +          + TL  +ARR  P     L+          + +  H A+ D
Sbjct: 120 MPELESYFHYRYLDVSTLKELARRWKPEI---LD--------GFTKQGTHQAMDD 163


>gi|46445857|ref|YP_007222.1| DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399498|emb|CAF22947.1| probable DNA polymerase I [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 891

 Score = 42.1 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 46/143 (32%), Gaps = 34/143 (23%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            ++ ++I  D ETT L     +++ IG                 + P      P   +L+
Sbjct: 318 LSQQKEICLDTETTDLRPLEAQLVGIGLG---------------VEPKKAWYIPLNGQLN 362

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G              + S+        +  +  HN K+D   +       N +    +  
Sbjct: 363 G------------DFVLSQLKPLLENPSIGFYGHNFKYDYHVLR------NHNISVANIS 404

Query: 124 IDTLSIARRKHPSSR-NDLNSLC 145
            DT+  +   +   R + L+ L 
Sbjct: 405 FDTILASYLLNSHKRQHSLDHLA 427


>gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565]
 gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565]
          Length = 921

 Score = 42.1 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 27/139 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    RI+  G    ++  K       ++ P G       ++L        
Sbjct: 345 AFDTETTSLDYMEARIV--GVSFAVEAGK-----AAYV-PFGHDYLGAPVQL-------- 388

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
               S + +  +      +     +  N K+D   +      +N D        DT+  +
Sbjct: 389 ----SEAVVLGKLKPLLEDPTCLKVGQNLKYDRNVL------LNHDIDLQGIAYDTMLES 438

Query: 131 RRKHPS-SRNDLNSLCKRY 148
              + + SR+D++SL KRY
Sbjct: 439 YVLNSTASRHDMDSLAKRY 457


>gi|260435580|ref|ZP_05789550.1| DNA polymerase I [Synechococcus sp. WH 8109]
 gi|260413454|gb|EEX06750.1| DNA polymerase I [Synechococcus sp. WH 8109]
          Length = 986

 Score = 42.1 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 22/147 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M   +    + FD ETT L+     ++ IG      + +T      ++ P G K + ++ 
Sbjct: 383 MACTDSGLPVAFDTETTDLNPFRAELVGIGIC----WGETLDAL-AYI-PLGHKGNEDS- 435

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                + E L       ++ +    +    N      NAK+D   +      +       
Sbjct: 436 -----SPEQL----PLETVLTALAPWLASSNHPKTLQNAKYDRLILLRHGVALEGV---- 482

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKR 147
             +IDTL     +  ++++ L  + +R
Sbjct: 483 --VIDTLLADYLRDAAAKHGLELMAER 507


>gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
 gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
          Length = 902

 Score = 42.1 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 64/200 (32%), Gaps = 54/200 (27%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +    +   FD ETT  ++   +++ +                  + P+     P   
Sbjct: 317 MKKLADAKVFAFDTETTDFNAIQAKLVGV---------------SFAVSPHEAAYVPLWH 361

Query: 61  KLHGITDEFLKDKPSF---SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
              G         P+      +  E      + N   I  N K+D   +        +  
Sbjct: 362 DYTG--------APAQLDKEEVLRELKPLLEDPNKTIICQNLKYDAEVL------AKEGL 407

Query: 118 LDPSRIIDTLSIARRKHPSS-RNDLNSLCKRY-----------------GITISHRSKHG 159
              ++  DTL  +   + SS R+DLN+L  +Y                  I+ +H +   
Sbjct: 408 TIRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDK 467

Query: 160 ALL----DSHLLSDVYIKMM 175
           A      D+ +   ++ K+M
Sbjct: 468 ATAYAAEDADVTLQLHHKLM 487


>gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3]
 gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3]
          Length = 995

 Score = 42.1 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 78/255 (30%), Gaps = 59/255 (23%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH------ 63
           + FD ETT LD     ++        +              +G       + L       
Sbjct: 396 VAFDTETTSLDPMQAELVGFSLAIADNGK----------DASGTDIRAAYVPLTHKTGSG 445

Query: 64  ------GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                 GI     + +  F+   +   D   ++    IA N K+D   +    +R     
Sbjct: 446 GDLFSDGIRLA--EGQVPFAEALARLKDLLEDEAVLKIAQNLKYDYLLM----KRHG--- 496

Query: 118 LDPSRIIDTLSIARRKHPSS-RNDLNSLCKR-YG---------------------ITISH 154
           +      DT+ I+         + +++L +R  G                     + I  
Sbjct: 497 VVMQSFDDTMLISYVLEAGKTTHGMDTLSERWLGHTPIAYKDVAGSGKSSITFDFVDIDK 556

Query: 155 RSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL--LKRDKPL 212
            + + A  D+ +   ++  M++          +  +R  +     + ++    +  D+ +
Sbjct: 557 ATAY-AAEDADVTLRLW--MVLKPRLAAERLTSVYERLERPLVPVLAHMEERGITVDRQI 613

Query: 213 FTRITKEELDEHDKT 227
            +R++ E   +    
Sbjct: 614 LSRLSGELAQKAAAF 628


>gi|70953922|ref|XP_746033.1| POM1 [Plasmodium chabaudi chabaudi]
 gi|56526532|emb|CAH77590.1| POM1, putative [Plasmodium chabaudi chabaudi]
          Length = 1429

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 42/149 (28%)

Query: 5    NKMRKIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            N ++    D+ETTGL+   ++I  I+I      +Y      + +F               
Sbjct: 1240 NGIKYCGLDMETTGLEVFGEKIRLIQIAV---ENYPVII--YDMF--------------- 1279

Query: 63   HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
              IT+          +I        N++N   I  N KFD  F+         +  + + 
Sbjct: 1280 -NITNN---------NILDGLRKILNDENIVKIIQNGKFDTKFLL-------YNNFNITN 1322

Query: 123  IIDTLSIARRKHPSSR---NDLNSLCKRY 148
            I DT   ++    +       LN++ ++Y
Sbjct: 1323 IFDTYIASKLLDKNKNMYGFKLNNIVEKY 1351


>gi|83273487|ref|XP_729420.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii]
          Length = 1813

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 42/149 (28%)

Query: 5    NKMRKIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            N ++    D+ETTGL+   ++I  I+I      +Y      + +F               
Sbjct: 1259 NGIKYCGLDMETTGLEVFGEKIRLIQIAV---ENYPVII--YDMF--------------- 1298

Query: 63   HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
              IT+          +I        N++N   I  N KFD  F+         +  + + 
Sbjct: 1299 -NITNN---------NILDGLRKILNDENIVKIIQNGKFDTKFLL-------YNNFNITN 1341

Query: 123  IIDTLSIARRKHPSSR---NDLNSLCKRY 148
            I DT   ++    +       LN++ ++Y
Sbjct: 1342 IFDTYIASKLLDKNKNMYGFKLNNIVEKY 1370


>gi|50304591|ref|XP_452251.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641384|emb|CAH01102.1| KLLA0C01254p [Kluyveromyces lactis]
          Length = 401

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
            ++ H    D+ ++     RI+    D   I DT+   +  + S+ + L    +   I  
Sbjct: 269 AFVGHGFASDLKWLKTLQLRIS----DDIPIFDTMKFFQSIYGSTGSGLGKALRLLQIP- 323

Query: 153 SHRSKHGALLDSHLLSDVYIKM 174
            H   H A  D++    + + M
Sbjct: 324 -HAYMHNAGNDAYYTLRLLLHM 344


>gi|83649263|ref|YP_437698.1| hypothetical protein HCH_06640 [Hahella chejuensis KCTC 2396]
 gi|83637306|gb|ABC33273.1| conserved hypothetical protein [Hahella chejuensis KCTC 2396]
          Length = 182

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 57/177 (32%), Gaps = 26/177 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGI 65
               D E + LD      IE+G          +     +L    P     S EA  +HGI
Sbjct: 23  PCFIDFEASSLDLICSYPIEVGVC------LPDGAIHSWLLRPAPLWTDWSEEACAIHGI 76

Query: 66  TDEFL-KDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           T + L ++  +   +     +   E    +A        FD  +++   +     P    
Sbjct: 77  TRQQLQEEGVNIVDVAHALNELLPEHVYCDA------WTFDSFWLHRLFRAAKLQPAFKL 130

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
             I     A    P   N+     +R  I       H A  D+ +L   + KM++  
Sbjct: 131 ESI-----AALLAPQQVNNWADTRRRA-IETLGVETHRAANDAQILYTTW-KMVIEQ 180


>gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|224456350|ref|ZP_03664823.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 897

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 27/142 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET  L++    ++ +        +        ++    R                +
Sbjct: 323 AFDTETDSLNTYEANLVGLSFCAKEGRA-------FYIPLQHRYL-------------GV 362

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +     +  +    F +     +AHN KFD   ++     IN       ++ DT+ +A
Sbjct: 363 PQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEING------KVDDTMIMA 416

Query: 131 RRKHPSSRNDLNSLCK-RYGIT 151
                S ++D++SL K   GI 
Sbjct: 417 YVLKSSGKHDMDSLSKEHLGIE 438


>gi|157368671|ref|YP_001476660.1| oligoribonuclease [Serratia proteamaculans 568]
 gi|166918640|sp|A8G8U2|ORN_SERP5 RecName: Full=Oligoribonuclease
 gi|157320435|gb|ABV39532.1| Exonuclease RNase T and DNA polymerase III [Serratia
          proteamaculans 568]
          Length = 181

 Score = 42.1 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MTGNENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|325185226|emb|CCA19715.1| exonuclease putative [Albugo laibachii Nc14]
          Length = 858

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 19/139 (13%)

Query: 46  VFLCPNGRKNSPEALKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
             + P     +       GIT E L+  K + + +   F       +   + H+   D+ 
Sbjct: 501 ELVRPQSTIINYHTEHS-GITGEMLESVKTTVADVQVHFLAELFASDTILVGHSLTSDLR 559

Query: 105 FINAELQRINKDPLDPSRIIDT--LSIARRKHPSSRNDLNSLCKRY---GITISHRSKHG 159
            +           L    + DT  L    R  P  +  L  L K +    I     S H 
Sbjct: 560 ALR----------LVHLCVADTAILFPHARGFPF-KTSLKYLAKTFLHRDIQTQTESGHD 608

Query: 160 ALLDSHLLSDVY-IKMMVG 177
           +  D+    ++  +K++ G
Sbjct: 609 SAEDAVTAMELLKLKILNG 627


>gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
 gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
          Length = 897

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 27/142 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET  L++    ++ +        +        ++    R                +
Sbjct: 323 AFDTETDSLNTYEANLVGLSFCAKEGRA-------FYIPLQHRYL-------------GV 362

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +     +  +    F +     +AHN KFD   ++     IN       ++ DT+ +A
Sbjct: 363 PQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEING------KVDDTMIMA 416

Query: 131 RRKHPSSRNDLNSLCK-RYGIT 151
                S ++D++SL K   GI 
Sbjct: 417 YVLKSSGKHDMDSLSKEHLGIE 438


>gi|110677750|ref|YP_680757.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
 gi|109453866|gb|ABG30071.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
          Length = 933

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 28/146 (19%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI--- 65
            +  D ETTGL+     ++ I                  + P      P   K  G    
Sbjct: 347 YVAVDTETTGLNEMTAELVGISLC---------------VEPGTACYIPLIHKAAGSDDL 391

Query: 66  --TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
             +D+  + +    +          +++   I  N K+D               +  + I
Sbjct: 392 FGSDDLAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAKVFAQV-------GITVAPI 444

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRY 148
            DT+ ++   H     + +++L +RY
Sbjct: 445 DDTMLMSYAMHGGLHGHGMDALSERY 470


>gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|295312618|ref|ZP_06803370.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 897

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 27/142 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET  L++    ++ +        +        ++    R                +
Sbjct: 323 AFDTETDSLNTYEANLVGLSFCAKEGRA-------FYIPLQHRYL-------------GV 362

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +     +  +    F +     +AHN KFD   ++     IN       ++ DT+ +A
Sbjct: 363 PQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEING------KVDDTMIMA 416

Query: 131 RRKHPSSRNDLNSLCK-RYGIT 151
                S ++D++SL K   GI 
Sbjct: 417 YVLKSSGKHDMDSLSKEHLGIE 438


>gi|15837858|ref|NP_298546.1| oligoribonuclease [Xylella fastidiosa 9a5c]
 gi|11133792|sp|Q9PDX2|ORN_XYLFA RecName: Full=Oligoribonuclease
 gi|9106239|gb|AAF84066.1|AE003959_8 oligoribonuclease [Xylella fastidiosa 9a5c]
          Length = 193

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 33/177 (18%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSP----E 58
           ++  R I  D+E TGLD+  D IIEI  V       T+    V    P    + P    E
Sbjct: 9   ESDRRLIWIDLEMTGLDTHRDSIIEIATV------VTDAQLNVLAEGPEFAISHPLQMLE 62

Query: 59  ALK-----LHGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           A+       H  +       +  ++   + +S  +    +     +    ++   D  F+
Sbjct: 63  AMDEWNRNQHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKTGASPMCGNSICQDRRFL 122

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + ++  + +     +  + TL         + + L+ + K         S H AL D
Sbjct: 123 HRQMPCLERYFHYRNLDVSTLKELAGCW--APSILDGVVK--------TSSHTALSD 169


>gi|332678896|gb|AEE88025.1| DNA polymerase I [Francisella cf. novicida Fx1]
          Length = 897

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 27/142 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET  L++    ++ +        +        ++    R                +
Sbjct: 323 AFDTETDSLNTYEANLVGLSFCAKEGRA-------FYIPLQHRYL-------------GV 362

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +     +  +    F +     +AHN KFD   ++     IN       ++ DT+ +A
Sbjct: 363 PQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEING------KVDDTMIMA 416

Query: 131 RRKHPSSRNDLNSLCK-RYGIT 151
                S ++D++SL K   GI 
Sbjct: 417 YVLKSSGKHDMDSLSKEHLGIE 438


>gi|160898849|ref|YP_001564431.1| endodeoxyribonuclease [Delftia acidovorans SPH-1]
 gi|160364433|gb|ABX36046.1| endodeoxyribonuclease [Delftia acidovorans SPH-1]
          Length = 188

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 52/176 (29%), Gaps = 39/176 (22%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG--IT-- 66
            D ET GL      ++ IGAV    +++T   TF   +          ++K HG  I   
Sbjct: 9   IDTETMGLPPAGA-LLSIGAVFFDLHTQTLGPTFNRTIN------LASSVK-HGGTIDAG 60

Query: 67  ---------DEFLK----DKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAE 109
                    DE  K           + ++F  +  +     +     +++ FD+  +   
Sbjct: 61  TVLWWLRQGDEARKAVAYGGEPIDLVLADFAAWIAQTCRHDDVRPWGNSSTFDLTIVGGA 120

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            QR+                 R   P            Y         H AL D+ 
Sbjct: 121 FQRLGLKAPWYFTNERDFRTVRNMFPH---------IEYDPGEKGTGAHNALADAQ 167


>gi|308233567|ref|ZP_07664304.1| hypothetical protein AvagD15_00852 [Atopobium vaginae DSM 15829]
 gi|328943346|ref|ZP_08240811.1| hypothetical protein HMPREF0091_10036 [Atopobium vaginae DSM 15829]
 gi|327491315|gb|EGF23089.1| hypothetical protein HMPREF0091_10036 [Atopobium vaginae DSM 15829]
          Length = 322

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 10/136 (7%)

Query: 12  FDIETTGLDSKNDRIIEIGA--VELLDYSKTNRTFQVFLC-PN--GRKNSPEALKLHGIT 66
            D+ETT        II +G   ++L + S        +   P+   +K  P A ++H IT
Sbjct: 137 VDLETTSRFPDRGYIINLGMEFIDLREDSDPRDGHSAYFGMPDLYAQKGVPLA-QIHHIT 195

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNA--EWIAHNAKFDVGFINAELQRINKDPLDPSR-I 123
            + +  K  F    ++  +           +AHNA F+  +    L    +   +    +
Sbjct: 196 WDNIAGKTPFRQ-ATKIQEALLHAFCTFPIMAHNAAFEDSWFMLHLNGYAQARKEGKIVV 254

Query: 124 IDTLSIARRKHPSSRN 139
           ID+  I RR  P  ++
Sbjct: 255 IDSRDICRRCDPEIKS 270


>gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
          Length = 949

 Score = 42.1 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 37/148 (25%)

Query: 12  FDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
           FD ETT LD+   +I+ +  AVE                        +A  +        
Sbjct: 376 FDTETTSLDTFEAQIVGLSFAVE----------------------PQKAYYV-----ALP 408

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            DK     I   F     + + E    N K+D+  +      +        R+ DT+   
Sbjct: 409 DDKQKTEEILRRFAPLLEDASIEKTGQNMKYDISVLGNYGIGVGG------RMFDTMIAH 462

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKH 158
               P  R++++ + + +   + +R+ H
Sbjct: 463 YLLQPELRHNMDYMAEVF---LGYRTIH 487


>gi|284006621|emb|CBA71882.1| oligoribonuclease [Arsenophonus nasoniae]
          Length = 173

 Score = 42.1 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 18/140 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRKNSPEALKLH-- 63
            D+E TGLD + DRIIEI  +                  Q              +K H  
Sbjct: 24  IDLEMTGLDPQQDRIIEIATIVTDSNLTILSEGPVIAIHQS--EQQLSLMDEWNIKTHTE 81

Query: 64  -GITDEFLK-----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
            G+ D  +K     +K +  +  +    +     +    ++   D  F+   +  + K  
Sbjct: 82  SGLIDR-VKSSQYDEKKAELATIAFLEKWVPIGVSPICGNSVAQDRRFLFKYMPELEKYF 140

Query: 118 LDPSRIIDTL-SIARRKHPS 136
                 + TL  +ARR  P 
Sbjct: 141 HYRYLDVSTLKELARRWKPD 160


>gi|312958179|ref|ZP_07772702.1| DNA polymerase A [Pseudomonas fluorescens WH6]
 gi|311287610|gb|EFQ66168.1| DNA polymerase A [Pseudomonas fluorescens WH6]
          Length = 931

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 27/151 (17%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + N  +   FD ETTG+D+   +++ +                  + P+     P     
Sbjct: 339 KLNDAKLFAFDTETTGIDAHQAQLVGV---------------SFAVQPHEAAYIPLTHAY 383

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--- 119
            G     + D+    ++         +     I  +AKFD+  +      I+ DP     
Sbjct: 384 IG-----VPDQLDRDTVLRALKPLLEDPTKLKIGQHAKFDMNILANCA--IDGDPAQGIT 436

Query: 120 -PSRIIDTLSIARRKHPSS-RNDLNSLCKRY 148
                 DT+  +   + ++ R+D++SL K+Y
Sbjct: 437 VQGIAFDTMLESYVLNATATRHDMDSLAKKY 467


>gi|270264991|ref|ZP_06193254.1| oligoribonuclease [Serratia odorifera 4Rx13]
 gi|270040925|gb|EFA14026.1| oligoribonuclease [Serratia odorifera 4Rx13]
          Length = 181

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MTGNENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|195031133|ref|XP_001988295.1| GH11086 [Drosophila grimshawi]
 gi|193904295|gb|EDW03162.1| GH11086 [Drosophila grimshawi]
          Length = 343

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 48/157 (30%), Gaps = 38/157 (24%)

Query: 9   KIVFDIETTGL---DSKNDRIIEIGAVEL-----LDYSKTNRTFQVF----------LCP 50
             V D+ET+ L   +     I E+             ++T    Q              P
Sbjct: 21  FAVLDLETSNLPVHNRNRVSITELCIYAFDPAVLKGSAETQEELQTLGRISSPILTNRVP 80

Query: 51  NGRKN--------------SPEALKLHGITDEFLKDKPSFSS----IFSEFWDFFNEQNA 92
              +                P+A ++ G+ +  L+ +         I  +F +       
Sbjct: 81  EPPRVMHKLNLLFQPSMMVHPDAERVTGLNNYILERESKLDENAAHIVLKFLEHLPPPVC 140

Query: 93  EWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +AHN  +FD   +    +++  +       +D+L 
Sbjct: 141 -LVAHNGWEFDFPIVRNVFEKLKLNSPPSILCVDSLR 176


>gi|29611363|gb|AAO91876.1| putative oligoribonuclease [uncultured bacterium]
          Length = 170

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 33/168 (19%)

Query: 15  ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--------KLH--- 63
           E +GL    DR++EI  V       T         P    + P+A+        K     
Sbjct: 2   EMSGLYPDTDRVLEIAIVVTDSQLVTVAE-----APVKIVHQPDAVLDRMDSWNKSTHRK 56

Query: 64  -GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            G+ D+    K S   + +E   F      E  +    ++   D  F+   + ++     
Sbjct: 57  SGLIDKVKAAKQSEVEVEAELIAFLLQYLPENTSPMCGNSICQDRRFLARYMPKLEAFFH 116

Query: 119 DPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
             +  + TL  +ARR  P              + ++   KH AL D +
Sbjct: 117 YRNLDVSTLKELARRWKPGIM-----------VGLTKHGKHEALADVY 153


>gi|124006820|ref|ZP_01691650.1| gp101 [Microscilla marina ATCC 23134]
 gi|123987501|gb|EAY27210.1| gp101 [Microscilla marina ATCC 23134]
          Length = 165

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 75  SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH 134
           + + I  E   F   +  E+ A+ A FD    +  +Q +N  P    +  + L     + 
Sbjct: 68  AIAQIREEILLFLAHRTPEFWAYYASFDWVIFSWIMQDMNAMPAHYPKYCNDLRQEIARL 127

Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDS---HLLSDVYIKMMVG 177
              +N          I  +H +KH AL D+     L  + I    G
Sbjct: 128 KFPKN---------EIPRAH-NKHNALNDALWNQQLHQLLIDFEQG 163


>gi|291335358|gb|ADD94973.1| DNA polymerase I putative [uncultured phage MedDCM-OCT-S04-C148]
          Length = 640

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 41/144 (28%)

Query: 10  IVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + FD ET  L  +    R++++GA    D       FQ+                     
Sbjct: 21  LCFDTETLQLQPERGKLRLLQLGA-RDRDTIVLIDCFQL--------------------- 58

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
               DK  ++        FF+  +  W+AHNA FD+G++         +      +  ++
Sbjct: 59  ----DKGDWAD----LRWFFSTPDRFWLAHNAVFDLGWLQEH------NIYPAGWVRCSM 104

Query: 128 SIARRK---HPSSRNDLNSLCKRY 148
             +R      P+S++ L+S+ KRY
Sbjct: 105 LASRLLTNGLPNSKHGLDSVVKRY 128


>gi|164663451|ref|XP_001732847.1| hypothetical protein MGL_0622 [Malassezia globosa CBS 7966]
 gi|159106750|gb|EDP45633.1| hypothetical protein MGL_0622 [Malassezia globosa CBS 7966]
          Length = 186

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 14/152 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC---PNG-RKNSP 57
           + K     +  D E TGLD  NDR++EI  +      +       ++    P+  +    
Sbjct: 13  LHKEDEPLVWIDCEMTGLDPNNDRLLEIACIVTDGQLRPVDEGVSYVIRTQPHVLQDMDE 72

Query: 58  EALKLH---GITDEFLKDK------PSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFIN 107
                H   G+ D  L  K         +++ +   D     + A     +   D  F+ 
Sbjct: 73  WCTTTHTNTGLIDACLDAKMSHMHQDVRAAVLAYVLDRIPEARIACLAGSSVHADKAFLV 132

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRN 139
            E+  + K        + T+    R+   ++ 
Sbjct: 133 NEMPELIKHLHYRIVDVSTIKELVRRWYGTKY 164


>gi|15221481|ref|NP_172133.1| CCR4-NOT transcription complex protein, putative [Arabidopsis
           thaliana]
 gi|75337235|sp|Q9SHJ0|CAF1A_ARATH RecName: Full=Probable CCR4-associated factor 1 homolog 1
 gi|6692686|gb|AAF24820.1|AC007592_13 F12K11.20 [Arabidopsis thaliana]
 gi|26451267|dbj|BAC42735.1| putative CCR4-associated factor [Arabidopsis thaliana]
 gi|28973249|gb|AAO63949.1| putative CCR4-associated factor [Arabidopsis thaliana]
 gi|332189867|gb|AEE27988.1| putative CCR4-associated factor 1-1 [Arabidopsis thaliana]
          Length = 360

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 25/173 (14%)

Query: 17  TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDK--- 73
           T  ++K     EIG V  +++S               + S E L+ HG+  + ++D+   
Sbjct: 75  TLFNAKG----EIGGVWEINFSNFGDPSDT-----RNELSIEFLRRHGLDLQKIRDEGVD 125

Query: 74  -------PSFSSIF--SEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLD-PSR 122
                  P   ++F   +  +F   Q A   A+     + G +         + +    +
Sbjct: 126 MFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQ 185

Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + DT  +A        +  L+ L +   IT   R+ H A  DS + + V+IK+
Sbjct: 186 VYDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHH-AGSDSLMTALVFIKL 237


>gi|28899597|ref|NP_799202.1| oligoribonuclease [Vibrio parahaemolyticus RIMD 2210633]
 gi|153840401|ref|ZP_01993068.1| oligoribonuclease [Vibrio parahaemolyticus AQ3810]
 gi|260876662|ref|ZP_05889017.1| oligoribonuclease [Vibrio parahaemolyticus AN-5034]
 gi|260902310|ref|ZP_05910705.1| oligoribonuclease [Vibrio parahaemolyticus AQ4037]
 gi|31076785|sp|Q87L01|ORN_VIBPA RecName: Full=Oligoribonuclease
 gi|28807833|dbj|BAC61086.1| oligoribonuclease [Vibrio parahaemolyticus RIMD 2210633]
 gi|149745937|gb|EDM57067.1| oligoribonuclease [Vibrio parahaemolyticus AQ3810]
 gi|308093946|gb|EFO43641.1| oligoribonuclease [Vibrio parahaemolyticus AN-5034]
 gi|308110954|gb|EFO48494.1| oligoribonuclease [Vibrio parahaemolyticus AQ4037]
          Length = 181

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNG--RKNSP 57
           +  +    I  D+E TGLD +  +IIEI ++             V     P     K   
Sbjct: 1   MSFSDQNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELAKMDD 60

Query: 58  EALKLH---GITDEFLKD-KPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAE 109
                H   G+  E +++ K S     ++  +F  +      +    ++   D  F+   
Sbjct: 61  WCTNTHTASGLV-ERVRNSKISEQDAVAQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKH 119

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + +        + TL    R+       L+          S +  H AL D
Sbjct: 120 MPELEEYFHYRYLDVSTLKELTRRWKPE--VLD--------GFSKQGTHLALDD 163


>gi|315042243|ref|XP_003170498.1| hypothetical protein MGYG_07743 [Arthroderma gypseum CBS 118893]
 gi|311345532|gb|EFR04735.1| hypothetical protein MGYG_07743 [Arthroderma gypseum CBS 118893]
          Length = 563

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 48/144 (33%), Gaps = 25/144 (17%)

Query: 81  SEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSR--------IIDT--LSI 129
               +         + HN   D+  F    +  + +   D  +        +IDT  L+ 
Sbjct: 309 EALREKLKSGPPVLVGHNLFTDLVNFYKCFIGDLPRRVEDFQQSINELFPLVIDTKYLAT 368

Query: 130 ARRKHPSSRNDLNSLCKRYGIT----ISHRSKHGAL----------LDSHLLSDVYIKMM 175
           A      + + L++LC+  G            H A            DS + + +++K+ 
Sbjct: 369 AGGVLREASSALSTLCENLGAREVPKFETHPDHSAYTVSTPIHEAGYDSLMTAQIFLKLA 428

Query: 176 VGGSQINFGFKTNEDRFFKEEKKT 199
           V   + +   +   +R  ++  + 
Sbjct: 429 VQLYETSSSREALLNRANRDAAEV 452


>gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
 gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
          Length = 917

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    R++ +                  + P      P A +        L
Sbjct: 343 AFDTETTALDPMTARLVGL---------------SFSIEPGKAAYLPVAHR-----GPDL 382

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++     + +    +    + + +  + K+D   +      +N          DTL  +
Sbjct: 383 PEQLPIDDVLARLRPWLESADRKKVGQHLKYDAQVLANYGIALNGIE------HDTLLES 436

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 437 YVLESHRTHDMDSLALRHLGV 457


>gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18]
 gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 897

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 27/142 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET  L++    ++ +        +        ++    R                +
Sbjct: 323 AFDTETDSLNTYEANLVGLSFCAKEGRA-------FYIPLQHRYL-------------GV 362

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +     +  +    F +     +AHN KFD   ++     IN       ++ DT+ +A
Sbjct: 363 PQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEING------KVDDTMIMA 416

Query: 131 RRKHPSSRNDLNSLCK-RYGIT 151
                S ++D++SL K   GI 
Sbjct: 417 YVLKSSGKHDIDSLSKEHLGIE 438


>gi|18653816|ref|NP_570750.1| DNA polymerase [Macacine herpesvirus 5]
 gi|7329997|gb|AAF59986.1|AF210726_7 polymerase [Rhesus monkey rhadinovirus H26-95]
 gi|2625044|gb|AAC58687.1| DNA polymerase [rhesus monkey rhadinovirus H26-95]
 gi|4494914|gb|AAD21336.1| DNA polymerase [Macaca mulatta rhadinovirus 17577]
          Length = 1014

 Score = 42.1 bits (98), Expect = 0.076,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 47/142 (33%), Gaps = 25/142 (17%)

Query: 8   RKIVFDIETTG------LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R + FDIE TG           D +I+I  V                   G  N P  L 
Sbjct: 295 RIVAFDIECTGEAGFPCATRDGDAVIQISCVFYTTR-------------EGAPNPPNILF 341

Query: 62  LHG----ITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHN-AKFDVGFINAELQRINK 115
             G    I D  + + PS   +   F+    + +      +N + FD+ ++     ++  
Sbjct: 342 SVGTCDPIPDTDVLEFPSEYDMLVSFFAMIRDFEVDFLTGYNISNFDLPYLITRASQVYN 401

Query: 116 DPLDPSRIIDTLSIARRKHPSS 137
             L+    I T SI     P  
Sbjct: 402 LRLNEYTKIKTGSIFEVHEPRG 423


>gi|71909674|ref|YP_287261.1| hypothetical protein Daro_4065 [Dechloromonas aromatica RCB]
 gi|71849295|gb|AAZ48791.1| conserved hypothetical protein [Dechloromonas aromatica RCB]
          Length = 168

 Score = 42.1 bits (98), Expect = 0.076,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 57/170 (33%), Gaps = 21/170 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGIT 66
            IV DIE +G   +    IEIG             +   + P          A  +HGIT
Sbjct: 4   PIVIDIEASGF-GRGSYPIEIGFYMSD-----GSAYCALIQPEAGWTHWDESAEAVHGIT 57

Query: 67  DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            E L  K +P+   I  E       +     A    +D  +++     ++  P       
Sbjct: 58  REVLLAKGRPAV-EICLELNRRLRGERLYCDA--WAYDYVWLSKLYDTVDLVPTF----- 109

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITIS-HRSKHGALLDSHLLSDVYIK 173
            TL   R         L  +  R  + +     +H A  D+ +L +  ++
Sbjct: 110 -TLRDIRELLEDCEMTLWHIT-RASVELRLQLRRHRASGDARVLFETLLE 157


>gi|332536010|ref|ZP_08411688.1| oligoribonuclease [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034620|gb|EGI71185.1| oligoribonuclease [Pseudoalteromonas haloplanktis ANT/505]
          Length = 181

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 60/180 (33%), Gaps = 35/180 (19%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNGR 53
           +  NK   I  D+E TGL+ + D+I+EI  V                       L     
Sbjct: 1   MTINKSNLIWLDLEMTGLEPETDKILEIATVVTDADLNILAEGPTIAIHQSDELLN---- 56

Query: 54  KNSPEALKLHGITDEFLK-DKPSFSS--IFSEFWDFFNEQ----NAEWIAHNAKFDVGFI 106
                    HG +    +    +F      ++  DF  +      +    ++   D  F+
Sbjct: 57  GMDEWCTTQHGKSGLTARCKASTFDEEYAVAQTLDFLKQWVPAGVSPMCGNSIGQDRRFM 116

Query: 107 NAELQRINKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           N  ++ +  +     R +D  +I   ARR  P        L K     ++ +  H AL D
Sbjct: 117 NKYMREL--EDFFHYRNLDVSTIKELARRWKP------EVLAK-----VNKKGSHLALDD 163


>gi|330802940|ref|XP_003289469.1| hypothetical protein DICPUDRAFT_94903 [Dictyostelium purpureum]
 gi|325080427|gb|EGC33983.1| hypothetical protein DICPUDRAFT_94903 [Dictyostelium purpureum]
          Length = 2236

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 58/166 (34%), Gaps = 32/166 (19%)

Query: 8   RKIVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEAL 60
           + + +DIETT L     DS  D I+ I   ++   Y   NR      +        PE  
Sbjct: 254 KVLAYDIETTKLPLKFPDSSIDSIMMISYMLDRQGYLIVNREIVSEDIKDFEYTPKPEYY 313

Query: 61  -KLHGITDEFLKDKPSFSSIFSEFWDFFNEQ-NAEWIAHN-AKFDVGFINAELQRINKDP 117
                     + ++P+  ++  +F+    E+    ++++N   FD  F+ A       D 
Sbjct: 314 GPFT------VFNEPNEKAVIEKFFSHIKEEKPHIFVSYNGDMFDWPFVEARAVHHGIDM 367

Query: 118 L--------------DPSRIIDTLSIARR--KHPSSRNDLNSLCKR 147
           L                +  +D     +R    P   + L ++ + 
Sbjct: 368 LREIGFRCDNGEYKSKTNPHMDAFCWVKRDSYLPHGSHGLKAVTRE 413


>gi|261823163|ref|YP_003261269.1| oligoribonuclease [Pectobacterium wasabiae WPP163]
 gi|261607176|gb|ACX89662.1| Exonuclease RNase T and DNA polymerase III [Pectobacterium wasabiae
           WPP163]
          Length = 180

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 26/154 (16%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA- 59
           M+ +N +  I  D+E TGL+  +DRIIEI  +                 P    + P++ 
Sbjct: 1   MVDENNL--IWIDLEMTGLNPDHDRIIEIATLVTDANLNVLAE-----GPVLAVHQPDSQ 53

Query: 60  --------LKLH---GITDEFLKDKPSFSSIFS----EFW-DFFNEQNAEWIAHNAKFDV 103
                   ++ H   G+TD  +K   +           F   +     +    ++   D 
Sbjct: 54  LALMDDWNVRTHGSSGLTDR-VKASTTDEHAAELETLAFLQKWVPAGKSPICGNSIGQDR 112

Query: 104 GFINAELQRINKDPLDPSRIIDTL-SIARRKHPS 136
            F+   +  +          + TL  +ARR  P 
Sbjct: 113 RFLFRYMPELEAYFHYRYLDVSTLKELARRWKPE 146


>gi|254412782|ref|ZP_05026555.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196180517|gb|EDX75508.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 984

 Score = 41.7 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 27/140 (19%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + +D ET+ L  +N  ++ IG    L+   T+  +       G+    +          
Sbjct: 394 PVAWDTETSDLKPRNAELVGIGCCWGLEA--TDTAYIPIAHNQGQNLDQQT--------- 442

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                     +               +  N KFD   +  +  ++         ++DT+ 
Sbjct: 443 ----------VLEALRPILERDRYPKVLQNVKFDRLVLRTQGIKLAGV------VMDTML 486

Query: 129 IARRKHPSSRNDLNSLCKRY 148
            +   +P + ++LNSL +RY
Sbjct: 487 ASYVLNPDNSHNLNSLTERY 506


>gi|307178869|gb|EFN67414.1| DNA polymerase epsilon catalytic subunit A [Camponotus floridanus]
          Length = 2245

 Score = 41.7 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 76/218 (34%), Gaps = 49/218 (22%)

Query: 1   MIRKNKMRKIVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT-FQVFLCPNGR 53
           MI   +   + +DIETT L     D+  D+I+ I   ++   Y  TNR      +     
Sbjct: 257 MIEPPEPIVLAYDIETTKLPLKFPDASIDQIMMISYMIDGQGYLITNRELISADIRNFEY 316

Query: 54  KNSPEAL-KLHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAEL 110
              PE            + ++P+  +  + F+D  +E +   ++ +N   FD  F+ A  
Sbjct: 317 TPKPEFEGPFT------VFNEPNEKATITRFFDHIDEIRPHIFVTYNGDFFDWPFVEARA 370

Query: 111 QRINKDPLDP---------------SRIIDTLSIARR--KHPSSRNDLNSLCK---RYG- 149
              N D  +                +  +D L   RR    P    +L ++ K   RY  
Sbjct: 371 AIHNMDMKEKIGFSKNREGVYVNRAAMHMDCLCWVRRDSYLPVGSQNLKAVAKAKLRYDP 430

Query: 150 ITISHRSKHG------------ALLDSHLLSDVYIKMM 175
           + +                   ++ D+     +Y K +
Sbjct: 431 VELDPEDMCRLASEEPEVLANYSVSDAVATFYLYQKYI 468


>gi|257453441|ref|ZP_05618736.1| oligoribonuclease Orn [Enhydrobacter aerosaccus SK60]
 gi|257449193|gb|EEV24141.1| oligoribonuclease Orn [Enhydrobacter aerosaccus SK60]
          Length = 183

 Score = 41.7 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 61/179 (34%), Gaps = 33/179 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEA- 59
           +  +K   I  D+E TGLD+ +D IIEI  +       T+    +    P    ++P+  
Sbjct: 1   MAVDKKHLIWIDLEMTGLDTLSDTIIEIATI------VTDSELNILAEGPVFAIHTPDIV 54

Query: 60  --------LKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104
                    + HG       I    +    + +   +    +     +    ++   D  
Sbjct: 55  LNSMDDWNTRQHGQSGLIDRIRRSNVTMAQAETETIAFLSKYVESGRSPMCGNSICQDRR 114

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+  ++  + +      R +D  ++    +    + L+S           +  H AL D
Sbjct: 115 FLARQMPTLER--FFHYRNLDVSTVKELAYRWRPDILSS--------FEKKGNHLALDD 163


>gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD]
 gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD]
          Length = 917

 Score = 41.7 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    R++ +                  + P      P A +        L
Sbjct: 343 AFDTETTALDPMTARLVGL---------------SFSIEPGKAAYLPVAHR-----GPDL 382

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++     + +    +    + + +  + K+D   +      +N          DTL  +
Sbjct: 383 PEQLPIDDVLARLRPWLESADRKKVGQHLKYDAQVLANYGIALNGIE------HDTLLES 436

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 437 YVLESHRTHDMDSLALRHLGV 457


>gi|302830634|ref|XP_002946883.1| hypothetical protein VOLCADRAFT_116136 [Volvox carteri f.
           nagariensis]
 gi|300267927|gb|EFJ52109.1| hypothetical protein VOLCADRAFT_116136 [Volvox carteri f.
           nagariensis]
          Length = 2541

 Score = 41.7 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 32/157 (20%)

Query: 8   RKIVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT--------FQVFLCPNGR 53
           R   FDIETT L     +++ D++  I   ++   Y   NR         F+    P   
Sbjct: 271 RICAFDIETTKLPLQFPNAEYDQVFMISYMLDRQGYLIVNREVVGADISDFEYTPKPEF- 329

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQ 111
                  K+         + P   ++   F++     + A ++ +N   FD  FI A  +
Sbjct: 330 ---EGPFKVT--------NAPDERALLVHFFEHMRSVKPAIYVTYNGDFFDFPFIEARKE 378

Query: 112 RINKDPLDPSRIIDTLSIARRKH-PSSRNDLNSLCKR 147
            +++  +          + R  + P     L ++ K 
Sbjct: 379 CLSRHAVHMD---CMHWVDRDSYLPQGSRGLKAVTKA 412


>gi|238750063|ref|ZP_04611566.1| Oligoribonuclease [Yersinia rohdei ATCC 43380]
 gi|238711607|gb|EEQ03822.1| Oligoribonuclease [Yersinia rohdei ATCC 43380]
          Length = 181

 Score = 41.7 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          + +N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MAENQNNLIWIDLEMTGLDPQRDRIIEIA 29


>gi|153003099|ref|YP_001377424.1| hypothetical protein Anae109_0222 [Anaeromyxobacter sp. Fw109-5]
 gi|152026672|gb|ABS24440.1| conserved hypothetical protein [Anaeromyxobacter sp. Fw109-5]
          Length = 172

 Score = 41.7 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 68/182 (37%), Gaps = 20/182 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M   V D+E  G       ++ +GAV +       RTF     P      P+AL +   T
Sbjct: 1   MSLYVVDVEADGPIPGKYSMVSLGAVLVEPG--LGRTFYGRTRPIADAFLPDALAVSATT 58

Query: 67  -DEFLK-DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQ-RINKDPL-D 119
            +E L+ D+P    + + F  +  E       + + N  FD  F+N      + ++P   
Sbjct: 59  REEHLRFDEP--GEVMAAFERWIQETTRGKPVFFSDNLAFDWQFVNWYFHTYLGRNPFGW 116

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
             R I  L     K        ++  +   +  +    H  + D+   ++  + M+  G 
Sbjct: 117 SGRRIGDLYCGMVK--------DAYAQWKHLRKTGHDHHP-VNDAKGNAEALLAMIDMGL 167

Query: 180 QI 181
           ++
Sbjct: 168 KL 169


>gi|145641023|ref|ZP_01796604.1| oligoribonuclease [Haemophilus influenzae R3021]
 gi|145274184|gb|EDK14049.1| oligoribonuclease [Haemophilus influenzae 22.4-21]
          Length = 115

 Score = 41.7 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          +  +K   I  D+E TGLD + +RIIEI  +        
Sbjct: 1  MSFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNI 39


>gi|303324211|ref|XP_003072093.1| exonuclease family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240111803|gb|EER29948.1| exonuclease family protein [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 387

 Score = 41.7 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 62/201 (30%), Gaps = 21/201 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D E           + I A++ L  S         + P+ R       K  GIT+  
Sbjct: 169 IALDCEMVST-IAGQYPVSISAIDYLTGSVLIN---YLIKPSVRVLDWR-TKFSGITEAM 223

Query: 70  LKDK-------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           +          P + +  +  W +   Q    I  +   D+  +     R+         
Sbjct: 224 VTQAVTDGTALPHWEAARALLWTYMTPQ-TILIGQSLSNDLNALGMVHTRV------VDS 276

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            I T     ++   S   L  LC  + GITI     H +L D+    +V +  +    ++
Sbjct: 277 EILTRHAVGKEFARSW-GLKRLCGLFLGITIQEGEGHDSLEDAFAAREVVLWCLNNTEKL 335

Query: 182 NFGFKTNEDRFFKEEKKTVPN 202
                   +   +E+      
Sbjct: 336 AAWAGEQRNALIQEQNAAKER 356


>gi|257784310|ref|YP_003179527.1| hypothetical protein Apar_0505 [Atopobium parvulum DSM 20469]
 gi|257472817|gb|ACV50936.1| hypothetical protein Apar_0505 [Atopobium parvulum DSM 20469]
          Length = 322

 Score = 41.7 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 48/139 (34%), Gaps = 16/139 (11%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALK--------L 62
            DIETT    +   I+ +G         T       + P+      PE  K        +
Sbjct: 136 IDIETTSRFPELGYIVNVGFEFWNLGRNTVP-----VEPHTAYFGIPEIYKEKGVPLADI 190

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKF-DVGFINAELQRINKDPLDP 120
           H IT + ++ K SF              +   ++AHNA F D  F+              
Sbjct: 191 HQITWKDVEGKKSFRDDKKAQEALLTTMKKIPFMAHNAAFEDSWFMFNIDGYAEARKAGK 250

Query: 121 SRIIDTLSIARRKHPSSRN 139
             +ID+  I RR  P  R+
Sbjct: 251 IIVIDSRDICRRLDPEIRS 269


>gi|134079023|emb|CAK48332.1| unnamed protein product [Aspergillus niger]
          Length = 518

 Score = 41.7 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 71/207 (34%), Gaps = 40/207 (19%)

Query: 10  IVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT- 66
           +V D E   + ++  R  I  + AV+ +       +   ++ P  R+      +  GIT 
Sbjct: 310 VVIDCEM--VQAEKGRRVIAYLAAVDFITGEVLINS---YVDPQ-RRIFNWCTRYSGITL 363

Query: 67  ---DEFLKDKPSFSS---IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
               + + +  +           WDF  + +   I H+ K D+  +     RI       
Sbjct: 364 KAMKKAVANGDTLRGWMGARRALWDFI-DSDTVLIGHDIKHDLNCLGIIHPRI-----VD 417

Query: 121 SRIIDTLSIARRKHPSSRN----DLNSL-CKRYGITISHR-SKHGALLDSHLLSDV---- 170
           S I+   ++ R +  + R      L +L C      I    + H AL D+    DV    
Sbjct: 418 STILTAEAVFRPRWETQRFRRTWSLKTLSCVFLDRFIQGGSNGHSALEDAVATKDVVMFC 477

Query: 171 ---------YIKMMVGGSQINFGFKTN 188
                    + +   GG      F+T 
Sbjct: 478 LEQPEYLKIWAEFTRGGWNDLDDFETL 504


>gi|28198432|ref|NP_778746.1| oligoribonuclease [Xylella fastidiosa Temecula1]
 gi|182681104|ref|YP_001829264.1| oligoribonuclease [Xylella fastidiosa M23]
 gi|32129804|sp|Q87E07|ORN_XYLFT RecName: Full=Oligoribonuclease
 gi|28056516|gb|AAO28395.1| oligoribonuclease [Xylella fastidiosa Temecula1]
 gi|182631214|gb|ACB91990.1| Exonuclease RNase T and DNA polymerase III [Xylella fastidiosa M23]
 gi|307579552|gb|ADN63521.1| oligoribonuclease [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 193

 Score = 41.7 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 33/177 (18%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSP----E 58
           ++  R I  D+E TGLD+  D IIEI  V       T+    V    P    + P    E
Sbjct: 9   ESDRRLIWIDLEMTGLDTHRDSIIEIATV------VTDAQLNVLAEGPEFAISHPLNVLE 62

Query: 59  ALK-----LHGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           A+       H  +       +  ++   + +S  +    +     +    ++   D  F+
Sbjct: 63  AMDEWNRNQHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKIGASPMCGNSICQDRRFL 122

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           + ++  + +     +  + TL         S + L+ + K         S H AL D
Sbjct: 123 HRQMPCLERYFHYRNLDVSTLKELAGCW--SPSILDGVVK--------TSSHTALSD 169


>gi|87121900|ref|ZP_01077785.1| oligoribonuclease [Marinomonas sp. MED121]
 gi|86162698|gb|EAQ63978.1| oligoribonuclease [Marinomonas sp. MED121]
          Length = 183

 Score = 41.7 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 35/180 (19%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEAL 60
           +  +K   I  D+E TGLD + + IIEI  +       T++   V    PN   + P ++
Sbjct: 1   MSLDKENLIWIDLEMTGLDPEKNTIIEIATI------VTDKHLNVLSEGPNLAIHQPLSV 54

Query: 61  --------KLH----GITDEFLKDKPSFSSI----FSEFWDFFNEQNAEWIAHNAKFDVG 104
                     H    G+T   L+ + S S            +  +  +    ++   D  
Sbjct: 55  MDAMDEWCTSHHGQSGLTKRVLETQMSMSQAELETIQFLEKYVPKGVSPICGNSVGQDRR 114

Query: 105 FINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   +  +          + T+  +A+R  P     L+          S +  H A+ D
Sbjct: 115 FLYRYMPALEAYFHYRYIDVSTIKELAKRWQPE---VLD--------GFSKKGSHLAMDD 163


>gi|327305563|ref|XP_003237473.1| exonuclease [Trichophyton rubrum CBS 118892]
 gi|326460471|gb|EGD85924.1| exonuclease [Trichophyton rubrum CBS 118892]
          Length = 734

 Score = 41.7 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 67/206 (32%), Gaps = 24/206 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D E    +     +  I  V   D  +    F   + P          +  G+T E L
Sbjct: 358 ALDCEMCITEGGKSELTRISLVSW-DGERVLDEF---VKPEN-PIIDYLTRFSGVTKEKL 412

Query: 71  KDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
               +  S I  +  +    + +  I H+   D+  +           L    IIDT SI
Sbjct: 413 DPVTTNLSDIQQKLLEILTPR-SILIGHSLNSDLNALK----------LTHPFIIDTASI 461

Query: 130 ARR-KHPSSRNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGSQINFGFK 186
               + P  +  L  LC+RY G  I      H  + D+       + ++    +    + 
Sbjct: 462 YPHPRGPPLKPSLKWLCQRYLGREIQKGMAGHDPVEDAKA----VLDLVKQKCEKGEAWG 517

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPL 212
           TNE       ++   +   +K   P+
Sbjct: 518 TNEASTESIFQRLARSSRPVKSSGPV 543


>gi|283786843|ref|YP_003366708.1| oligoribonuclease [Citrobacter rodentium ICC168]
 gi|282950297|emb|CBG89944.1| oligoribonuclease [Citrobacter rodentium ICC168]
          Length = 181

 Score = 41.7 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSANENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|328855289|gb|EGG04416.1| hypothetical protein MELLADRAFT_78319 [Melampsora larici-populina
           98AG31]
          Length = 703

 Score = 41.7 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 63/208 (30%), Gaps = 31/208 (14%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            ++ I  D E   L      +     V   D           + P          +  G+
Sbjct: 342 PLKLIGIDCEMC-LTENGSELTR-CTVVGKDGKPILDE---LVKPES-PIINYLTRFSGM 395

Query: 66  TDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           T++ L+  + +   +  +      + +   + H+ + D+  +           L    +I
Sbjct: 396 TEKRLQGVQTTLKDVQIKLSSMI-DFDTVLVGHSLECDLRALK----------LLHPWVI 444

Query: 125 DTLSIARRKHPSS---RNDLNSLC-KRYGITISHRSK-------HGALLDSHLLSDVYIK 173
           DT  I +  HP     +  L  L  K     I            H +  D+    ++ +K
Sbjct: 445 DTSVIYQ--HPKGLPMKPSLKWLAQKWLNKEIQANPPPGSMTLGHDSEEDARTAIELVLK 502

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVP 201
            M  G+         E  F +  + T P
Sbjct: 503 KMEKGTGFGEFVNDVESIFERMSRGTEP 530


>gi|119491496|ref|XP_001263269.1| hypothetical protein NFIA_065360 [Neosartorya fischeri NRRL 181]
 gi|119411429|gb|EAW21372.1| conserved hypothetical protein [Neosartorya fischeri NRRL 181]
          Length = 607

 Score = 41.7 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 12/93 (12%)

Query: 89  EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-----IIDTLSIARRKHPSSR-NDLN 142
           ++N   + HN   DV ++      +     +         IDT  + R          L 
Sbjct: 506 KRNLILVGHNTSMDVKYL----AGLGIPVFEDVTTAFVERIDTAELYRIIRSELNQRSLA 561

Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           S+    GI   +   H A  D+    +  ++M+
Sbjct: 562 SILGELGIIGWN--LHNAGNDARYTLEALVRMI 592


>gi|67609563|ref|XP_667048.1| 1200014O24Rik protein [Cryptosporidium hominis TU502]
 gi|54658141|gb|EAL36819.1| 1200014O24Rik protein [Cryptosporidium hominis]
          Length = 1932

 Score = 41.7 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 84   WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLN 142
              F  +    +I H    D   IN          + P +IIDT+ I R   P  R   L 
Sbjct: 1813 LQFLVDAGVVFIGHALPSDFKIINIY--------VPPFQIIDTVEIYRL--PDERYISLK 1862

Query: 143  SLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             L K           H +++D+    ++++K +
Sbjct: 1863 FLAKFVLNKNIQTEVHDSIVDAKTALELFLKHL 1895


>gi|66361700|ref|XP_627373.1| PAN2 family 3'5' exonuclease, UBC hydrolase (inactive) plus nuclease
            [Cryptosporidium parvum Iowa II]
 gi|46228750|gb|EAK89620.1| PAN2 family 3'5' exonuclease, UBC hydrolase (inactive) plus nuclease
            [Cryptosporidium parvum Iowa II]
          Length = 1936

 Score = 41.7 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 84   WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLN 142
              F  +    +I H    D   IN          + P +IIDT+ I R   P  R   L 
Sbjct: 1817 LQFLVDAGVVFIGHALPSDFKIINIY--------VPPFQIIDTVEIYRL--PDERYISLK 1866

Query: 143  SLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             L K           H +++D+    ++++K +
Sbjct: 1867 FLAKFVLNKNIQTEVHDSIVDAKTALELFLKHL 1899


>gi|307107035|gb|EFN55279.1| hypothetical protein CHLNCDRAFT_134204 [Chlorella variabilis]
          Length = 743

 Score = 41.7 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 21/160 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E            E+  V L+  S   R     + P+         +  GIT   
Sbjct: 396 VAVDCEM----VITAEGFELARVSLVGGSG-ARLLDALVVPDNPVLDYN-TRYSGITAAM 449

Query: 70  LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-- 126
           L+      +             +   + H  + D+  +           L   R ID+  
Sbjct: 450 LEGLTTRCADAQRLVLRHVGP-DTLLVGHTLENDLKALR----------LAHGRCIDSAV 498

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
           L    R  P  R+ L +L +R       +  H + +D+ +
Sbjct: 499 LYPHPRGLP-HRSSLRTLAQRLLARTIQQGAHDSYIDAEV 537


>gi|225848519|ref|YP_002728682.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643280|gb|ACN98330.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 586

 Score = 41.7 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 45/150 (30%), Gaps = 37/150 (24%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +   +  +  D E                V + D+ K +     +     R       + 
Sbjct: 17  KLKDLPYVYLDTE----------------VAVKDFEKVD-----YFNDKVRLIQIGTQE- 54

Query: 63  HGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
               D F+ D          EF      ++   + HN KFD+ F+           + P 
Sbjct: 55  ----DIFVIDAFKVERDTLKEFLKEV-LESKGIVGHNLKFDLKFLATNFD------VYPK 103

Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRY 148
            + DT   ++         ++ L+++  R 
Sbjct: 104 VVFDTFIASKILAKGDNSQKHSLSAVAVRL 133


>gi|170048912|ref|XP_001870835.1| exonuclease nef-sp [Culex quinquefasciatus]
 gi|167870834|gb|EDS34217.1| exonuclease nef-sp [Culex quinquefasciatus]
          Length = 554

 Score = 41.7 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E          +  +  V+          ++  + PN +       +  GIT E +K
Sbjct: 223 LDCEMCRTSINASELTRVSIVDEQGQ----EFYESLVRPNNKIID-YVTQFSGITPELMK 277

Query: 72  D-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +   +   +  E  +     +A  +  +  FD+  +    + ++   +D S + +    A
Sbjct: 278 NVSKTLKDVHRELKNKL-PPDAILVGQSLNFDLNAL----KMMHPYVIDTSILFNVTGTA 332

Query: 131 RRKHPSSRNDLNSLCKRY 148
                 ++  L  L K++
Sbjct: 333 -----GTKTKLKVLAKKF 345


>gi|109899992|ref|YP_663247.1| hypothetical protein Patl_3691 [Pseudoalteromonas atlantica T6c]
 gi|109702273|gb|ABG42193.1| conserved hypothetical protein [Pseudoalteromonas atlantica T6c]
          Length = 165

 Score = 41.7 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 17/175 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG--RKNSPEA 59
           +R + +  I+ DIE +G  + +   IE+G          +  F   + P    +  S EA
Sbjct: 1   MRSSMISPIILDIEASGFGASS-YPIEVGV-----ALDPDTRFCRLIRPQNDWQHWSEEA 54

Query: 60  LKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             LHGI+   L +K      +  E     N       +     D  +++   +       
Sbjct: 55  QGLHGISRSMLLEKGAPVHQVCIELNQLLN--GLTVYSDGWVVDSPWLSRLYESAGMSMS 112

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
                ++ +    +           L K   ++ +   +H A  D+ ++   Y+ 
Sbjct: 113 FELSQLEMILNEHQMDIWH------LAKSRILSETGEQRHRASFDASIILQTYLA 161


>gi|313904088|ref|ZP_07837468.1| putative elongation subunit of DNA-dependent DNA polymerase
           [Eubacterium cellulosolvens 6]
 gi|313471237|gb|EFR66559.1| putative elongation subunit of DNA-dependent DNA polymerase
           [Eubacterium cellulosolvens 6]
          Length = 409

 Score = 41.7 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 25/144 (17%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF---QVFLC-P-NGRKNSPEALKLH 63
            ++FDIETTGL  +   I  IGA+      KT  T+   Q FL  P   ++         
Sbjct: 25  PVLFDIETTGLSRRACHIYLIGAIA-----KTGDTWTLNQWFLDHPFEEKELLMTFAAF- 78

Query: 64  GITDEFLKDKPSFSSIFSEFWD-------FFNEQNAEWIAHN-AKFDVGFINAELQRINK 115
              +E  ++  + +     F           ++     +  N   FD+ ++  +      
Sbjct: 79  --LEEVRQNAATETDSIESFNQTTSDPKTACSDCRPVLVTFNGQTFDLPYVREKCSFYQL 136

Query: 116 -DPLDPSRIIDTLSIARRKHPSSR 138
            DP D     D     R   P  +
Sbjct: 137 PDPFDGFSHCDLY---RELFPLKK 157


>gi|289209008|ref|YP_003461074.1| exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
           K90mix]
 gi|288944639|gb|ADC72338.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
           K90mix]
          Length = 188

 Score = 41.7 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 23/164 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG----RKNSPEALKLHG--- 64
            D+E TGLD +NDRIIE+  +             V                  + HG   
Sbjct: 11  IDLEMTGLDPQNDRIIEVATIVTDKELNILAEGPVLAIYQPTEVLEAMDEWNRRTHGESG 70

Query: 65  ----ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
               I         +     +   D+  +  +    ++   D  F+   +  +       
Sbjct: 71  LIERIRHSSTDAAAAERETIAFLSDYVPKGASPMCGNSICQDRRFMARLMPELEAYFHYR 130

Query: 121 SRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + TL  +ARR  P     L              + H AL D
Sbjct: 131 NLDVSTLKELARRWAPDVIAKLQK-----------NASHQALQD 163


>gi|327198385|ref|YP_004306959.1| DNA polymerase I [Streptococcus phage Dp-1]
 gi|314912687|gb|ADT64078.1| DNA polymerase I [Streptococcus phage Dp-1]
          Length = 779

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 24/138 (17%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL-HGITDEFL 70
            D+ET GLD+ +D +  +                    P    ++   +++ + I+ EF 
Sbjct: 88  IDVETDGLDTIHDELAGVCLYSPSQKGI--------YAPVNHVSNMTKMRIKNQISPEF- 138

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                      +      +     I HN+KFD+    +   R+           DT   A
Sbjct: 139 ---------MKKMLQRIVDSGIPVIYHNSKFDMK---SIYWRLGVK--MNEPAWDTYLAA 184

Query: 131 RRKHPSSRNDLNSLCKRY 148
              + +  + L SL  +Y
Sbjct: 185 MLLNENESHSLKSLHSKY 202


>gi|123968848|ref|YP_001009706.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
 gi|123198958|gb|ABM70599.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
          Length = 976

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 24/147 (16%)

Query: 3   RKNKMRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +K  +IV  D ET  L+  +  ++ IG     +         +F  P G +       
Sbjct: 375 RLDKTNQIVSLDTETNSLNPIDAELVGIGLCLGEEND------DLFYIPLGHQ------- 421

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
               T +   D+ S   +FS+  ++  +   E    N+KFD          +        
Sbjct: 422 ----TKKETPDQLSIEDVFSKLRNWIEDPKKEKALQNSKFDRQIFFNHGLDLKGVTF--- 474

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY 148
              DTL      +   ++ L+ +  R 
Sbjct: 475 ---DTLLADYLLNNQEKHGLSEISFRL 498


>gi|118354772|ref|XP_001010647.1| DNA polymerase family B, exonuclease domain containing protein
           [Tetrahymena thermophila]
 gi|89292414|gb|EAR90402.1| DNA polymerase family B, exonuclease domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 2298

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 33/172 (19%)

Query: 2   IRKNKMRKIVFDIETTGL-----DSKNDRIIEIGAVELLD-YSKTNRTF--QVFLCPNGR 53
           + +  ++ + FDIET+       D+K D ++ I  +   D Y   NR F  Q  +  +  
Sbjct: 226 VERPDLKYLAFDIETSKAELRFPDAKTDCVMMISLMYEGDAYLIVNRDFCGQDVVGFDYA 285

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHN-AKFDVGFINAELQ 111
                   +       + ++P+  +   +F+D   +  A  I + N  KFD  FI+    
Sbjct: 286 PTPEFECSIT------VYNEPNEKACIKKFFDIIVDYKAFIITSFNGDKFDWPFIHERCN 339

Query: 112 RINK------------DPLDPSRIIDTLSIARR-----KHPSSRNDLNSLCK 146
           ++               P    R +  L            P   + L ++ +
Sbjct: 340 QLGLSLEKEIGIHLEEGPEYFGRYLTHLDCLYWVIRDAYLPQGSHGLKAVTR 391


>gi|311281283|ref|YP_003943514.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae
           SCF1]
 gi|308750478|gb|ADO50230.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae
           SCF1]
          Length = 181

 Score = 41.7 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  ++   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSADENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 45

Query: 60  LKLHGITDEFLK-------------------DKPSFSSIFSEF--WDFFNEQN----AEW 94
           + +H  +DE L                       +     +E    +F  +      +  
Sbjct: 46  IAVHQ-SDEQLALMDDWNVRTHTGSGLVERVKASAIDDRAAELATIEFLKQWVPAGKSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+           
Sbjct: 105 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFK 153

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 154 KQGTHQAMDD 163


>gi|207093232|ref|ZP_03241019.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 126

 Score = 41.7 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR--YGITISHRSKHGA 160
             F+          PL   + + TL +++R   S R  L+ L +   +GI +S    H A
Sbjct: 1   YNFLGRYFVEKLHCPLLNLK-LCTLDLSKRAILSMRYSLSFLKELLGFGIEVS----HRA 55

Query: 161 LLDSHLLSDVY 171
             D+     ++
Sbjct: 56  YADALASYKLF 66


>gi|156370293|ref|XP_001628405.1| predicted protein [Nematostella vectensis]
 gi|156215381|gb|EDO36342.1| predicted protein [Nematostella vectensis]
          Length = 2250

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 69/209 (33%), Gaps = 49/209 (23%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEAL-K 61
           + FDIETT L     DS  D I+ I   ++   +   NR      +        PE   +
Sbjct: 238 LAFDIETTKLPLKFPDSATDSIMMISYMIDGQGFLIINREIVSEDIEDFEYTPKPEYEGQ 297

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHN-AKFDVGFINAELQRINKDPLD 119
              I      ++P    +   F++   E +   ++ +N   FD  F+ A       + ++
Sbjct: 298 FTCI------NEPDEEGLLRRFFEHILEVKPNIFVTYNGDSFDWPFVEARASHHGINMME 351

Query: 120 ---------------PSRIIDTLSIARR--KHPSSRNDLNSLCK---RYG-ITISHRSKH 158
                          P+  +D     +R    P    +L +  K   RY  I +      
Sbjct: 352 EIGFSPDSAGEYKSRPAIHMDAFRWVKRDSYLPVGSQNLKATTKAKLRYDPIELDPEEMC 411

Query: 159 G------------ALLDSHLLSDVYIKMM 175
                        ++ D+     +Y+K +
Sbjct: 412 RMASEQPQELSNYSVSDAVATYYLYMKYV 440


>gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis]
          Length = 920

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 61/195 (31%), Gaps = 50/195 (25%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +  ++  FD ETT LD +  +I+                   +  P          +L
Sbjct: 341 RLSTEKRFAFDTETTSLDYRIAQIVGFSVAF--------DAQDAYYVPLAHDYEGAPEQL 392

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           +               I ++      +++ + I H+ K+D   +      +         
Sbjct: 393 NR------------EVILAQIKPILEDESVKKIGHHLKYDAHVLENHGIHL------AGW 434

Query: 123 IIDTLSIARRKHP-SSRNDLNSLCKRY----------------------GITISHRSKHG 159
             DT+  +   +  ++R+ ++ + + Y                       I +   + H 
Sbjct: 435 YFDTMLASYVLYSVATRHGMDDVARLYLSHLTTTYEQVAGRGAKQKTFNQIPLET-AAHY 493

Query: 160 ALLDSHLLSDVYIKM 174
           A  D+H+   +Y  +
Sbjct: 494 AAEDAHVTYRLYEVL 508


>gi|218688727|ref|YP_002396939.1| putative ribonuclease (polynucleotidyl transferase) from prophage
           [Escherichia coli ED1a]
 gi|218426291|emb|CAR07116.1| putative ribonuclease (polynucleotidyl transferase) from prophage
           [Escherichia coli ED1a]
          Length = 196

 Score = 41.7 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 38/198 (19%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCP------NGRKNSPEA 59
           M  ++ D ET G +     I  IGAV    +  K  + F+ F+ P       G  N+  A
Sbjct: 4   MNHLMIDTETLG-NGPGAAIFAIGAVFFDPFTGKLGKQFEKFIDPVDSERNGGTVNAATA 62

Query: 60  LKLHGITDEF---LKDKP-SFSSIFSEFWDFFNEQNAE--------WIAHNAKFDVGFIN 107
           +   G + E    L++   +  +  +EF  F +    +             A FD   + 
Sbjct: 63  VWWAGQSVEARSCLRNAEGTELAAVTEFLAFISRNMHDESPGNSLTIWCKGASFDFPILK 122

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS-----KHGALL 162
           + + R   +   P          R   P     L ++ +  G  +  RS      H AL 
Sbjct: 123 SAITRTAGEKSIPWCYW----NERCMRP-----LIAMAESTGWKMPGRSGKEAIAHTALG 173

Query: 163 D----SHLLSDVYIKMMV 176
           D    + ++S+++ +   
Sbjct: 174 DAVYQAKVVSEIWQRFTT 191


>gi|189440762|ref|YP_001955843.1| oligoribonuclease [Bifidobacterium longum DJO10A]
 gi|189429197|gb|ACD99345.1| Oligoribonuclease [Bifidobacterium longum DJO10A]
          Length = 216

 Score = 41.7 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 23/169 (13%)

Query: 8   RKIVFDIETTGLDS-KNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP---EALKL 62
           R I  D E TGLD    D ++E+  V    D +  +      + P+ +  +       ++
Sbjct: 16  RLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSEKAVNHMNDFVRQM 75

Query: 63  H---GITDEF---LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115
           H   G+ +E+   L    +   +      F  E     +A N    D  F++  +  +  
Sbjct: 76  HTRSGLINEWENGLSLAEAEQKVTEYVLRFTPEGVRPLLAGNTIGSDKKFLDHYMPDLMS 135

Query: 116 DPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                S  + T   +ARR +P            Y         H AL D
Sbjct: 136 HLHYRSVDVSTFKELARRWYP----------AVYENRPPKNGGHRALAD 174


>gi|156144449|gb|ABU52895.1| DNA polymerase [Macaca fascicularis rhadinovirus 2]
          Length = 749

 Score = 41.7 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 25/142 (17%)

Query: 8   RKIVFDIETTG------LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R + FDIE TG           D +I+I  V              +    G  N P  L 
Sbjct: 293 RIVAFDIECTGEAGFPCATRDGDAVIQISCV-------------FYTTKEGAPNPPNILF 339

Query: 62  LHG----ITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHN-AKFDVGFINAELQRINK 115
             G    I D  + + PS   +   F+    + +      +N + FD+ ++     ++  
Sbjct: 340 SVGTCDPIPDTDVLEFPSEYDMLVSFFAMLRDFEVDFLTGYNISNFDLPYLITRASQVYN 399

Query: 116 DPLDPSRIIDTLSIARRKHPSS 137
             L+    I T SI     P  
Sbjct: 400 LRLNEYTKIKTGSIFEVHEPRG 421


>gi|156096250|ref|XP_001614159.1| exonuclease [Plasmodium vivax SaI-1]
 gi|148803033|gb|EDL44432.1| exonuclease, putative [Plasmodium vivax]
          Length = 881

 Score = 41.7 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 65/169 (38%), Gaps = 27/169 (15%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK---NSPEALKLHGITDE 68
            D E     +K   + +I  V+          +  ++ P+ +     +P +    GI++ 
Sbjct: 444 IDCEMCETINKKKELTKITVVDAYMNIV----YDSYVVPDNQITNYLTPYS----GISES 495

Query: 69  FLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT- 126
            L+D       +       FN + +  I H+ + D+  +           +    ++DT 
Sbjct: 496 TLRDVNTKLKDVQEHLKKIFNNK-SILIGHSLENDLHALR----------IHHDHVVDTS 544

Query: 127 LSIARRKHPSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  +   +   +  L +LC +  GIT+     H ++ D+ +   +++ +
Sbjct: 545 VVYSNSPYYFLKPSLFNLCQRHLGITMKREKGHNSIDDAKI--SMFLAL 591


>gi|260942501|ref|XP_002615549.1| hypothetical protein CLUG_04431 [Clavispora lusitaniae ATCC 42720]
 gi|238850839|gb|EEQ40303.1| hypothetical protein CLUG_04431 [Clavispora lusitaniae ATCC 42720]
          Length = 283

 Score = 41.7 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 14/113 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNS---PEALKLH--- 63
            D E TGLD   D IIEI  +             ++  +    +         +  H   
Sbjct: 38  IDCEMTGLDIAKDHIIEICCIITDGNLNIIDEKGYESTVYVPKKVLDSMNEWCVNQHGKS 97

Query: 64  GITDEFLKD-KPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAEL 110
           G+T + L + + + + +  E  D+        + +    ++   D  F+  E 
Sbjct: 98  GLTAKVLANPQQTLAKVQQELLDYIQFYIPEPRTSLLAGNSVHMDKFFMMKEF 150


>gi|331673527|ref|ZP_08374290.1| exodeoxyribonuclease VIII [Escherichia coli TA280]
 gi|331068800|gb|EGI40192.1| exodeoxyribonuclease VIII [Escherichia coli TA280]
          Length = 258

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 64/202 (31%), Gaps = 56/202 (27%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF-- 69
            D+ET G +  N  I+ IGAV              F  P   +  P    +  +TD    
Sbjct: 77  IDLETMGTN-TNAPIVVIGAV--------------FFDPQTGEIGPVFYIVISLTDAMNT 121

Query: 70  -----------------------LKDKPSFSSIFSEFWDFF----NEQNAEWIAHNAKFD 102
                                  L D+       S F +F     +E+  +   + A FD
Sbjct: 122 GAVPDGGTIEWWLKQSSEARAAILTDQVKLKDALSRFREFINEYSDEKFVQVWGNGATFD 181

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
              +    +R+  D   P R  +   +          D ++   R  I      +H AL 
Sbjct: 182 NAILRTSYERL--DIPCPWRYHNDRDVRTIVELGKTIDFDA---RTVIPFEG-VRHNALD 235

Query: 163 DSH-----LLSDVYIKMMVGGS 179
           D+      + + +  K+++  +
Sbjct: 236 DARHQAKYVTATI-QKLILSQA 256


>gi|294810417|ref|ZP_06769074.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD
           CC 1b]
 gi|294442382|gb|EFG11192.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 614

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 32/141 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ETT  +  +  ++ +      +       F V + P+ R             D
Sbjct: 377 KILSLDTETTETEPMDAELVGMSFSIAEN-----EAFYVPV-PSDR-------------D 417

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LK       I  EF   F  +N+  +  N K+D+  +       N   +    + DT+
Sbjct: 418 EALK-------IVKEFRPVFENENSLKVGQNIKYDMIVLQ------NYGAVVKGPLFDTM 464

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P  R+ ++ L + Y
Sbjct: 465 IAHYVLQPELRHGMDYLAEIY 485


>gi|189464890|ref|ZP_03013675.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
           17393]
 gi|189437164|gb|EDV06149.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
           17393]
          Length = 941

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 32/141 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ETT  +     ++ +   +  +        Q +  P      PE        +
Sbjct: 369 KILSIDTETTSAEPMEAELVGMSFSDTEN--------QAYYVP----VPPE-------RE 409

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LK       I +EF   +  +N+  +  N K+D+  +      +  +        DT+
Sbjct: 410 EALK-------IVNEFRPLYENENSMKVGQNIKYDILVLQNYGVEVKGELF------DTM 456

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P  R++++ L + Y
Sbjct: 457 LAHYVLQPELRHNMDYLAEIY 477


>gi|323190787|gb|EFZ76056.1| exonuclease family protein [Escherichia coli RN587/1]
          Length = 823

 Score = 41.7 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 60/186 (32%), Gaps = 27/186 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALKL------ 62
            D+ET G +  +  II IGA+            F   +  +  G     + +K       
Sbjct: 645 IDLETMGKNP-DAPIIAIGAIFFDPQTGDMGPEFSKTIDLDTAGGVIDRDVIKWWLKQSR 703

Query: 63  -HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINAELQRINKDP 117
                   L D+        +  +F +E + E+      + A FD   +    +R     
Sbjct: 704 ETQ--SAILTDEIPLDDALLQLREFIDENSGEFFVQVWGNGANFDNVILRRSYERQGIP- 760

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD----VYIK 173
             P R  +   +          D ++   R  I      +H AL D+   +     ++ K
Sbjct: 761 -CPWRYCNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDARYQAKYVSAIWQK 815

Query: 174 MMVGGS 179
           ++   +
Sbjct: 816 LIPNQA 821


>gi|319950682|ref|ZP_08024583.1| AAA ATPase [Dietzia cinnamea P4]
 gi|319435665|gb|EFV90884.1| AAA ATPase [Dietzia cinnamea P4]
          Length = 820

 Score = 41.7 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 19/207 (9%)

Query: 16  TTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDK 73
           T G DS   R   +E+  V     + T       + P   ++  +A   +GI+   +   
Sbjct: 461 TVGGDSARSRPRPVELAVVFPDGSAVT-----TLVNPQ--RDLGQARADYGISASDVLLA 513

Query: 74  PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK 133
           P+    ++      +      +  N    +  +++EL+R+   P+     +D  S A   
Sbjct: 514 PTLPEAWALIAPLVDGYTPIGV--NLDATLECLDSELERLG-SPVAMPLGLDIPSAALIP 570

Query: 134 HPSSRNDLNSLCKRYGITISHRSKHGAL-LDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
              +R+   S  +R  + +  R +   L LD    + V+   +VG  Q   G        
Sbjct: 571 GERARHRAGSAIRRARVALEVRDR---LWLD-EAGAGVFD--VVGPGQAGPGELARGGYL 624

Query: 193 FKEEKKTVPNISLLKRDKPLFTRITKE 219
              +    P             RI+ E
Sbjct: 625 LTRDGDAHPPSPAALPQLSAMLRISAE 651


>gi|261888732|ref|YP_003264421.1| hypothetical protein pSLTBT_p060 [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|305696883|ref|YP_003864198.1| hypothetical protein pYT1_p055 [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|261857320|emb|CBA11393.1| hypothetical protein SLT-BT0592 [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|304376185|dbj|BAJ15347.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|312915768|dbj|BAJ39741.1| YacC [Salmonella enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|327536789|gb|AEA95620.1| hypothetical protein pSD853_77_39 [Salmonella enterica subsp.
           enterica serovar Dublin]
          Length = 169

 Score = 41.7 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +  D ETTGLD+   + +EIG V         R F+  L P      P A  +
Sbjct: 105 PVFLDTETTGLDA-GAQALEIGLVNARG----ERIFETRLKPT-VGIDPAAAAV 152


>gi|224504290|ref|YP_002635630.1| hypothetical protein SPC_p058 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224470999|gb|ACN48828.1| hypothetical protein SPC_p058 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 169

 Score = 41.7 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +  D ETTGLD+   + +EIG V         R F+  L P      P A  +
Sbjct: 105 PVFLDTETTGLDA-GAQALEIGLVNARG----ERIFETRLKPT-VGIDPAAAAV 152


>gi|209696189|ref|YP_002264119.1| oligoribonuclease [Aliivibrio salmonicida LFI1238]
 gi|208010142|emb|CAQ80467.1| oligoribonuclease [Aliivibrio salmonicida LFI1238]
          Length = 181

 Score = 41.7 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 51/177 (28%), Gaps = 29/177 (16%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKN 55
           +  N    I  D+E TGLD +  +IIEI ++        L         Q        K 
Sbjct: 1   MAINDQNLIWVDLEMTGLDPETHKIIEIASIVTDAQLNILAEGPVIAIHQS--EGELAKM 58

Query: 56  SPEALKLHGITDEFLK---------DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
                  H  T+  L          +  +     +    +  +  +    ++   D  F+
Sbjct: 59  DDWCTNTH--TNSGLVARVNASEHTEASAIEETIAFLEKWVPKGVSPICGNSIGQDRRFL 116

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
              + ++  +     R +D  +I           L+               H AL D
Sbjct: 117 YKHMPKL--EEYFHYRYVDVSTIKELTRRWKPEVLD--------GFEKTGTHLALDD 163


>gi|163782924|ref|ZP_02177919.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881604|gb|EDP75113.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 576

 Score = 41.7 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 86/258 (33%), Gaps = 77/258 (29%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             ++  +  D ETTG     DRI            +     ++F+               
Sbjct: 19  LERVPYLFIDTETTG-----DRIRLF---------QVGDEERIFVI-------------- 50

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                 L D P    +  E      ++    + HN KFD+ F+      +   P      
Sbjct: 51  -----DLFDLPEAVDVLKEL---IAKKG--VVGHNLKFDLKFMYP----LGIVP---YAT 93

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY-------GITISHRSKHGAL---------LDSHLL 167
            DT+  +       R+ L+ + +R         + +S  S+  AL          D  ++
Sbjct: 94  FDTMIGS-FLLGYERHSLSHVAERLLGYTMDKSLQLSDWSR-TALTKQQIEYAATDVLVV 151

Query: 168 SDVYIKM---MVGGSQINFGFKTNEDRFFKEEKKTVPN-------ISLLKRDKPLFTRIT 217
            +++ KM   +    + + G +    R  +    T P        +  + R +     + 
Sbjct: 152 RELFYKMREKLNALGETDRGEELLRTRTARVFGLTNPATVVEMAFVQEIARLEMNGIPVD 211

Query: 218 KEELD----EHDKTIQTL 231
           +EE++    E++K +Q L
Sbjct: 212 EEEIERLSREYEKKLQKL 229


>gi|310287864|ref|YP_003939122.1| Oligoribonuclease [Bifidobacterium bifidum S17]
 gi|309251800|gb|ADO53548.1| Oligoribonuclease [Bifidobacterium bifidum S17]
          Length = 216

 Score = 41.7 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 25/170 (14%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN---SPEALKL 62
           R I  D E TGLD    D ++E+  V    D +  +      + P+       +     +
Sbjct: 16  RLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSDAAVAHMNDFVRAM 75

Query: 63  H---GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-----AHNAKFDVGFINAELQRIN 114
           H   G+ +E  +   S      +  ++      + +      +    D  F++  +  + 
Sbjct: 76  HTRSGLINE-WEHGLSLEEAERKVTEYVLRFTPDGVRPLLAGNTIGSDKKFLDHYMPGLM 134

Query: 115 KDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 S  + TL  +ARR +P            Y    +    H AL D
Sbjct: 135 SHLHYRSVDVSTLKELARRWYP----------AVYENRPAKNGGHRALAD 174


>gi|238892647|ref|YP_002917381.1| oligoribonuclease [Klebsiella pneumoniae NTUH-K2044]
 gi|238544963|dbj|BAH61314.1| oligoribonuclease [Klebsiella pneumoniae subsp. pneumoniae
          NTUH-K2044]
          Length = 199

 Score = 41.7 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  N+   I  D+E TGLD + DRIIEI 
Sbjct: 19 MSANENNLIWIDLEMTGLDPERDRIIEIA 47


>gi|224283874|ref|ZP_03647196.1| oligoribonuclease [Bifidobacterium bifidum NCIMB 41171]
 gi|311064744|ref|YP_003971469.1| oligoribonuclease Orn [Bifidobacterium bifidum PRL2010]
 gi|313141028|ref|ZP_07803221.1| oligoribonuclease [Bifidobacterium bifidum NCIMB 41171]
 gi|310867063|gb|ADP36432.1| Orn Oligoribonuclease [Bifidobacterium bifidum PRL2010]
 gi|313133538|gb|EFR51155.1| oligoribonuclease [Bifidobacterium bifidum NCIMB 41171]
          Length = 216

 Score = 41.7 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 25/170 (14%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN---SPEALKL 62
           R I  D E TGLD    D ++E+  V    D +  +      + P+       +     +
Sbjct: 16  RLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSDAAVAHMNDFVRAM 75

Query: 63  H---GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-----AHNAKFDVGFINAELQRIN 114
           H   G+ +E  +   S      +  ++      + +      +    D  F++  +  + 
Sbjct: 76  HTRSGLINE-WEHGLSLEEAERKVTEYVLRFTPDGVRPLLAGNTIGSDKKFLDHYMPGLM 134

Query: 115 KDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 S  + TL  +ARR +P            Y    +    H AL D
Sbjct: 135 SHLHYRSVDVSTLKELARRWYP----------AVYENRPAKNGGHRALAD 174


>gi|254509115|ref|ZP_05121216.1| oligoribonuclease [Vibrio parahaemolyticus 16]
 gi|219547953|gb|EED24977.1| oligoribonuclease [Vibrio parahaemolyticus 16]
          Length = 181

 Score = 41.7 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 55/179 (30%), Gaps = 33/179 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEA- 59
           +  +    I  D+E TGLD +  +IIEI  +       T+    +    P    + PE+ 
Sbjct: 1   MSFSDQNLIWMDLEMTGLDPETHKIIEIATI------VTDSELNILAEGPVLAIHQPESE 54

Query: 60  --------LKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVG 104
                      H   G+       + +      +  +F  +      +    ++   D  
Sbjct: 55  LEKMDEWCTTTHTGSGLVARVRASQVTEQDAIRQTIEFLEKWVPKGKSPICGNSIGQDRR 114

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F+   +  + +        + TL    R+       L+          S    H AL D
Sbjct: 115 FLYKHMPELEEYFHYRYVDVSTLKELTRRWKPE--VLD--------GFSKSGSHLALDD 163


>gi|260904928|ref|ZP_05913250.1| oligoribonuclease [Brevibacterium linens BL2]
          Length = 189

 Score = 41.7 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 28/162 (17%)

Query: 17  TGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGR---KNSPEALKLH---GITDEF 69
           TGLD   D +IE+ AV    D +  +    + + P+       +    K+H   G+  E 
Sbjct: 2   TGLDEVRDELIEVAAVITDFDLNPLDEGIDIVIKPSAAALENMNDFVTKMHTSSGLITE- 60

Query: 70  LKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           L    + +   ++  ++  +       A    ++   D  F+N ++  +        RII
Sbjct: 61  LDAGTTVAEAQTQVLEYIKKHVPEAGKAPLGGNSVGTDKVFLNKQMPEL--VEHLHYRII 118

Query: 125 DTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           D  SI   +++  P          + Y  +      H AL D
Sbjct: 119 DVSSIKELSKQWFP----------RAYFQSPEKHGGHRALGD 150


>gi|68250317|ref|YP_249429.1| oligoribonuclease [Haemophilus influenzae 86-028NP]
 gi|148825742|ref|YP_001290495.1| oligoribonuclease [Haemophilus influenzae PittEE]
 gi|81335262|sp|Q4QJM8|ORN_HAEI8 RecName: Full=Oligoribonuclease
 gi|166216261|sp|A5UBG1|ORN_HAEIE RecName: Full=Oligoribonuclease
 gi|68058516|gb|AAX88769.1| oligoribonuclease [Haemophilus influenzae 86-028NP]
 gi|148715902|gb|ABQ98112.1| oligoribonuclease [Haemophilus influenzae PittEE]
          Length = 182

 Score = 41.7 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          +  +K   I  D+E TGLD + +RIIEI  +        
Sbjct: 1  MPFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNI 39


>gi|332083162|gb|EGI88393.1| exonuclease family protein [Shigella boydii 5216-82]
          Length = 181

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSANENNLIWIDLEMTGLDPELDRIIEIA---------------TLVTDANLNILAEGPT 45

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 46  IAVHQ-SDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 105 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 153

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 154 KQGTHQAMDD 163


>gi|261867655|ref|YP_003255577.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412987|gb|ACX82358.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 182

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          +  +K   I  D+E TGLD + +RIIEI  +        
Sbjct: 1  MSFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNI 39


>gi|94500476|ref|ZP_01307008.1| hypothetical protein RED65_16666 [Oceanobacter sp. RED65]
 gi|94427511|gb|EAT12489.1| hypothetical protein RED65_16666 [Oceanobacter sp. RED65]
          Length = 162

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 21/168 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGIT 66
             + D+E +G   +    IE+G V L D S         + P       S EA  +HGI+
Sbjct: 4   PAIIDLEASGF-GRGSYPIEVG-VALSDGSI----HSTLIKPPESWVHWSDEAQAIHGIS 57

Query: 67  DEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            E L ++  S   +     +    +     A    FD  ++           +     +D
Sbjct: 58  REQLNEEGKSPREVAMFLNNLLMGETLYSDA--WSFDSSWLGRLFDEA---EIVQRFRLD 112

Query: 126 TLSIARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           T++   ++          + L +  GI      KH A  D  LL + +
Sbjct: 113 TITRLLKEDELGAWSDIKDQLTQDLGI-----VKHRAANDVKLLRETF 155


>gi|224143029|ref|XP_002324825.1| predicted protein [Populus trichocarpa]
 gi|222866259|gb|EEF03390.1| predicted protein [Populus trichocarpa]
          Length = 305

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 72/211 (34%), Gaps = 47/211 (22%)

Query: 6   KMRKIVFDIE-----------TTGLDSKND--------RIIEIGAVELLDYSKTNRTFQV 46
           +   + FD E            T L    D        R+I+ G        K   T++ 
Sbjct: 32  RFPVVSFDTEFPGFFRNTPIDATDLTRYEDLKHNVDPLRLIQFGITVADASGKIGGTWEF 91

Query: 47  FLCPNGRKN--SPEALKL---HGIT-DEFLKDKPSFSSIFSEFWDFF--NEQNAEWIAHN 98
            L  +  K+    ++++    +GI  D+  +D   F  +F++         +N  W+  +
Sbjct: 92  NLRFDLSKDLFVSQSIQFLQDNGIDFDKLRRDGIDF-DMFAQLLSRVVAKHRNLCWVTFH 150

Query: 99  AKFDVGFINAELQRINKDPLDP-------------SRIIDTLSIARRK--HPSSRNDLNS 143
             +D   ++  L+ +   PL                 ++D   +AR           L +
Sbjct: 151 GLYD---LSHTLRTVTNRPLPHSLAGFTSLLGIVFGDVVDIKYMARFCQGLRGGELGLAA 207

Query: 144 LCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + K   +       H A  DS L + VY KM
Sbjct: 208 IAKILKVERVG-GAHQAGSDSLLTARVYTKM 237


>gi|323498389|ref|ZP_08103386.1| oligoribonuclease [Vibrio sinaloensis DSM 21326]
 gi|323316531|gb|EGA69545.1| oligoribonuclease [Vibrio sinaloensis DSM 21326]
          Length = 181

 Score = 41.7 bits (97), Expect = 0.096,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 25/175 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKN 55
           +  +    I  D+E TGLD +  +IIEI  +        L         Q        K 
Sbjct: 1   MSFSDQNLIWMDLEMTGLDPETHKIIEIATIVTDSELNILAEGPVLAIHQS--DAELAKM 58

Query: 56  SPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINA 108
                  H   G+       + +      +  +F  +      +    ++   D  F+  
Sbjct: 59  DEWCTTTHTGSGLVARVKASQVTEQDAIRQTIEFLEKWVPKGKSPICGNSIGQDRRFLYK 118

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  + +        + TL    R+       L+          S    H AL D
Sbjct: 119 HMPELEEYFHYRYVDVSTLKELTRRWKPE--VLD--------GFSKSGSHLALDD 163


>gi|254498741|ref|ZP_05111457.1| oligoribonuclease [Legionella drancourtii LLAP12]
 gi|254352069|gb|EET10888.1| oligoribonuclease [Legionella drancourtii LLAP12]
          Length = 173

 Score = 41.7 bits (97), Expect = 0.096,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 13/125 (10%)

Query: 15  ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK----NSPEALKLHG------ 64
           E TGLD + +RIIEI  V    +        VF     ++          K HG      
Sbjct: 2   EMTGLDPEENRIIEIATVVTDPHLNIIGEGPVFAIAQAKEHLDAMDAWNTKQHGQSGLVK 61

Query: 65  -ITDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            + D  + +  +     + F  ++ ++  +    ++   D  F+   +  +       + 
Sbjct: 62  RVLDSKVSEADAEQQTIN-FLKYYVDKGKSPMCGNSVCQDRRFLYKYMPELAAFFHYRNL 120

Query: 123 IIDTL 127
            + TL
Sbjct: 121 DVSTL 125


>gi|194015681|ref|ZP_03054297.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
 gi|194013085|gb|EDW22651.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
          Length = 744

 Score = 41.7 bits (97), Expect = 0.097,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 32/143 (22%)

Query: 9   KIVFDIETTGLDSKNDRII--EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +IVFD+ETTG+D  ND I+   I A++             ++    +   P+      ++
Sbjct: 136 EIVFDVETTGVDVWNDYIVGHVITAIKAD--------VHAYIPTRHKTILPQ------LS 181

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
            + + +             F+ +     +AHNAKFD+  ++ E  ++           DT
Sbjct: 182 RDLVNE---------TLRPFYEDPTVGKLAHNAKFDIHMLDREGIKL------RGLTWDT 226

Query: 127 LSIARRKHP-SSRNDLNSLCKRY 148
               R  +       L +L  +Y
Sbjct: 227 QEAMRLLNENEPSFALKNLVTKY 249


>gi|152990932|ref|YP_001356654.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
 gi|151422793|dbj|BAF70297.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
          Length = 888

 Score = 41.7 bits (97), Expect = 0.097,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 59/185 (31%), Gaps = 49/185 (26%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD ET  LD+K   ++        +          +  P G                 
Sbjct: 321 VAFDTETDDLDTKKANLVGFSFAYSEEK--------AYYVPIGHNYLG------------ 360

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D+             F       I HN KFD+  +     R   D  +   I+DT+ +
Sbjct: 361 VGDQVGLDKALEAISKIFEHT---IIGHNLKFDLSLLY----RYGID--EKKDIVDTMIL 411

Query: 130 ARRKHPSSRNDLNSLCKRY-------------------GITISHRSKHGALLDSHLLSDV 170
           A    P S   L S+ KR+                    ++I    K+ A  D+ +   V
Sbjct: 412 AWLVDPGSSVGLESVAKRFLDHDMIAYKETVKKGEDFSQVSIDAACKY-ASEDAVITYMV 470

Query: 171 YIKMM 175
           Y K++
Sbjct: 471 YFKLL 475


>gi|328472277|gb|EGF43147.1| oligoribonuclease [Vibrio parahaemolyticus 10329]
          Length = 181

 Score = 41.7 bits (97), Expect = 0.098,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNG--RKNSP 57
           +  +    I  D+E TGLD +  +IIEI ++             V     P     K   
Sbjct: 1   MSFSDQNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELAKMDD 60

Query: 58  EALKLH---GITDEFLKD-KPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAE 109
                H   G+  E +++ K S     ++  +F  +      +    ++   D  F+   
Sbjct: 61  WCTNTHTASGLV-ERVRNSKISEQDAVTQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKH 119

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + +        + TL    R+       L+          S +  H AL D
Sbjct: 120 MPELEEYFHYRYLDVSTLKELTRRWKPE--VLD--------GFSKQGTHLALDD 163


>gi|300702573|ref|YP_003744173.1| hypothetical protein RCFBP_10211 [Ralstonia solanacearum CFBP2957]
 gi|299070234|emb|CBJ41525.1| conserved protein of unknown function [Ralstonia solanacearum
           CFBP2957]
          Length = 234

 Score = 41.7 bits (97), Expect = 0.098,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 58/184 (31%), Gaps = 25/184 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ----VFLCPNGRKNS-------P 57
            +  DIE  G       ++   +   L       TF+          G           P
Sbjct: 39  YVSTDIEADGPIPGPHSMLSFASAAYLADKTLVGTFEANLETLPGAEGHPIQMQWWAQQP 98

Query: 58  EALKLHGITDEFLKDKP-SFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRI- 113
           EA           +  P +  +    + ++         ++A  A FD  F+   + R  
Sbjct: 99  EA-------WAACRHNPEAPEAALPRYVEWVESLPGKPVFVAFPAGFDFTFMFWYMMRFA 151

Query: 114 NKDPLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            + P   +   I TL+ A    P  RN   +   ++   + H   H AL D+     ++ 
Sbjct: 152 GRSPFGWAALDIKTLAFALTGLPYRRNVKAAFPAQWHDPLPH--THIALDDAKEQGALFC 209

Query: 173 KMMV 176
            M+ 
Sbjct: 210 NMLA 213


>gi|237654465|ref|YP_002890779.1| DNA polymerase I [Thauera sp. MZ1T]
 gi|237625712|gb|ACR02402.1| DNA polymerase I [Thauera sp. MZ1T]
          Length = 939

 Score = 41.7 bits (97), Expect = 0.098,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 41/141 (29%), Gaps = 28/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    R++ +                  + P      P A          L
Sbjct: 361 AFDTETTSLDPMAARLVGM---------------SFAVEPGEAAYLPLA----HRGAAQL 401

Query: 71  KDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            + P       +      +F       +  N K+D   +       N          DTL
Sbjct: 402 PEAPEQLPLDEVLDRLRPWFESDRHAKLGQNLKYDAHVL------ANHGIALRGIAHDTL 455

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
             +        +D++SL KR+
Sbjct: 456 LESYVLESDKAHDMDSLAKRH 476


>gi|171911275|ref|ZP_02926745.1| hypothetical protein VspiD_08875 [Verrucomicrobium spinosum DSM
           4136]
          Length = 149

 Score = 41.7 bits (97), Expect = 0.098,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 23/149 (15%)

Query: 51  NGRKNSPEALKLHGIT-----DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            G +    A ++HGI+     D  L   P+     S  +D+  ++   +   N   D  F
Sbjct: 3   EGAEWDARAAEVHGISFKEANDPAL---PTEHDAVSNAFDWIGQEKFIFAGLNPHMDRRF 59

Query: 106 INAELQRINKD----PLDPSRIIDTLSIA--------RRKHPSSRNDLNSLCKRYGITIS 153
           +N    R        P    R+ID  S+A            P   N  + +    G+   
Sbjct: 60  LNYARIRPGFQRGVLPDIGHRMIDLHSLAVPFALASGAAVPPRGFNT-DEIYSLLGMPPE 118

Query: 154 HRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            R  H A+  + + ++ + +++ G   ++
Sbjct: 119 PR-PHDAITGALMEAEAF-RILFGWPTLS 145


>gi|45199231|ref|NP_986260.1| AFR712Cp [Ashbya gossypii ATCC 10895]
 gi|44985371|gb|AAS54084.1| AFR712Cp [Ashbya gossypii ATCC 10895]
          Length = 496

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 9/89 (10%)

Query: 93  EWIAHNAKFDVGFINAELQRI-------NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLC 145
             + H    D+ ++ + L  +       N  P D   ++DT  + +  +    + L    
Sbjct: 317 AIVGHGVSGDLQWLRSLLIDLPTIAGPGNSHPRDHVSVLDTAHLYQYFYGQKGSSLGKSL 376

Query: 146 KRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + +G+   H   H A  D++    + +KM
Sbjct: 377 RLHGVP--HSYLHNAGNDAYYTLQLLMKM 403


>gi|157869668|ref|XP_001683385.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68126450|emb|CAJ04256.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 598

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 41/150 (27%)

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR---------IIDT--LSIAR 131
           F +    +    + HN   D  F+ + +     + L   +         I DT  L+  R
Sbjct: 304 FTELVKSR-KPCVGHNCFADWLFLMSAMDGALPEQLPQWKARTRELFPCIWDTRYLASRR 362

Query: 132 RKHPSSRN---DLNSLCKRYGITISH-----------------------RSKHGALLDSH 165
              PS R     L  L + Y    SH                        + H A  D+ 
Sbjct: 363 DLFPSGRFGSISLGGLHEAYLGASSHCTVELPLGFEEYDPVTLLGRGNSDAAHEAGYDAL 422

Query: 166 LLSDVYIKMMVGGSQINFGFKTNEDRFFKE 195
           +   V + ++    ++ +  +T      ++
Sbjct: 423 MTGTVLLNLLG---EVGYTLETAPAELSQK 449


>gi|28210675|ref|NP_781619.1| hypothetical protein CTC00967 [Clostridium tetani E88]
 gi|28203113|gb|AAO35556.1| conserved protein [Clostridium tetani E88]
          Length = 274

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 51/144 (35%), Gaps = 28/144 (19%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FDIETTG D +N+ II I      D       +  F+         E+L+          
Sbjct: 37  FDIETTGFDRENNNIILISLGWYED-------YHNFIIKQYY---AESLQ---------- 76

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                  I   F +   +    W ++N   FD  FI     + N +   P + +D     
Sbjct: 77  ---EEYDILKSFGEDIKDF-HVWSSYNGIAFDEPFIKYRFDKKNLEYHLPEKHVDLYRHI 132

Query: 131 RRKHP---SSRNDLNSLCKRYGIT 151
           +  +      R +L S+ +  G+ 
Sbjct: 133 KPYYKKLGMKRCNLKSVERFIGVN 156


>gi|281306681|ref|YP_003345487.1| hypothetical protein SBWP25_0022 [Pseudomonas phage phi-2]
 gi|271277986|emb|CBH51592.1| hypothetical phage protein [Pseudomonas phage phi-2]
          Length = 331

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 23/142 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVE-----LLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R ++ DIET         I+  G V       +  ++    + +          PE +  
Sbjct: 76  RILLIDIET-------APIL--GYVWSLWKQNVGLNQIKEEWYILSYCAKWLGEPEVIY- 125

Query: 63  HGITDEFLKDKPSFSS-IFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120
                E +++ P     + +  W   +E +   I  N   FD+  I A L      P  P
Sbjct: 126 -----EDIRENPFCDKPLLAGLWKLMDEAD-IIIGQNGKAFDMPKIQARLVMNGYLPPRP 179

Query: 121 SRIIDTLSIARRKHPSSRNDLN 142
            ++IDT+ +A+++   + N L 
Sbjct: 180 YKVIDTMLMAKQQFRFTSNKLE 201


>gi|90022321|ref|YP_528148.1| oligoribonuclease [Saccharophagus degradans 2-40]
 gi|89951921|gb|ABD81936.1| Exonuclease [Saccharophagus degradans 2-40]
          Length = 181

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 48/169 (28%), Gaps = 33/169 (19%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEA---------LK 61
            D+E TGL    D IIEI  +       T+    V    P      P+A           
Sbjct: 11  IDLEMTGLVPDRDVIIEIATI------VTDAQLNVLAEGPMLAIAQPKAVMDGMDEWNTN 64

Query: 62  LHGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
            HG +       +  +    +          +     +    ++   D  F+   + R+ 
Sbjct: 65  QHGKSGLTERVLNSAVSTAMAEQQTIEFLQQWVPAGKSPICGNSIGQDRRFLARYMPRLE 124

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 +  + TL     +       LN          + +  H AL D
Sbjct: 125 AYFHYRNLDVSTLKELAVRWKPE--VLN--------GFTKKGAHLALDD 163


>gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523]
          Length = 897

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 60/191 (31%), Gaps = 47/191 (24%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET  L++    ++ +        +        ++    R                +
Sbjct: 323 AFDTETDSLNTYEANLVGLSFCAKEGRA-------FYIPLQHRYL-------------GV 362

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +     +  +    F +     +AHN KFD   ++     IN       ++ DT+ +A
Sbjct: 363 PQQLELGFVLDKLKPLFADVKKAKVAHNFKFDEKVLSKYAIEING------KVDDTMIMA 416

Query: 131 RRKHPSSRNDLNSLCK-RYGIT------ISHRSKHG--------------ALLDSHLLSD 169
                S ++D++SL K   GI       I+   KH               A  D+ +   
Sbjct: 417 YVLKSSGKHDMDSLSKEHLGIEPIAYTAIAGTGKHQQTLDQIDIEIVAKYAAEDADITFR 476

Query: 170 VYIKMMVGGSQ 180
           ++        Q
Sbjct: 477 LFNHFKALLEQ 487


>gi|300941168|ref|ZP_07155677.1| conserved domain protein [Escherichia coli MS 21-1]
 gi|300454114|gb|EFK17607.1| conserved domain protein [Escherichia coli MS 21-1]
          Length = 414

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 65/206 (31%), Gaps = 64/206 (31%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF-- 69
            D+ET G +  N  I+ IGAV              F  P   +  P    +  +TD    
Sbjct: 233 VDLETMGAN-TNAPIVVIGAV--------------FFDPETGEIGPVFYIVISLTDAMNT 277

Query: 70  -----------------------LKDKPSFSSIFSEFWDFFNEQNAE----WIAHNAKFD 102
                                  L D+         F +F NE + E       + A FD
Sbjct: 278 GAVPDGGTIEWWLKQSSEARAAILTDQVKMKDALLRFREFVNEHSDEKFVQVWGNGATFD 337

Query: 103 VGFINAELQRINKD-PLDPSRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
              +    +R++   P   S   D    + + +    ++R+          I      +H
Sbjct: 338 NAILRTSYERLDIPCPWHYSNDRDVRTIVEMGKITDFNARSV---------IPFEG-VRH 387

Query: 159 GALLDS-----HLLSDVYIKMMVGGS 179
            AL D+     ++ + +  K++   +
Sbjct: 388 NALDDALHQAKYVTATI-QKLIPNQA 412


>gi|17557752|ref|NP_505606.1| hypothetical protein C08B6.8 [Caenorhabditis elegans]
 gi|7227907|sp|Q17819|ORN_CAEEL RecName: Full=Probable oligoribonuclease
 gi|3874144|emb|CAA96590.1| C. elegans protein C08B6.8, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 193

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 28/172 (16%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-------SPE 58
           + R I  D E TGLD +   + EI  +       T  T    +    ++           
Sbjct: 12  EQRIIWIDCEMTGLDVEKQTLCEIALIVTDSELNTIATGPDIVIHQPKEVLDNMEEWPRN 71

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAELQRIN 114
               +G+ ++ +  K S +   +E  DF         +    ++   D  FI   + ++ 
Sbjct: 72  TFHENGLMEKIIASKYSMADAENEVIDFLKLHALPGKSPIAGNSIYMDRLFIKKYMPKL- 130

Query: 115 KDPLDPSRIIDTLSIA---RRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            D     R ID  +I    +R +P  ++               +  H A  D
Sbjct: 131 -DKFAHYRCIDVSTIKGLVQRWYPDYKH------------PKKQCTHRAFDD 169


>gi|161867921|ref|YP_001598102.1| YacC [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|161087300|gb|ABX56770.1| YacC [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|323133004|gb|ADX20433.1| YacC protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|326626290|gb|EGE32634.1| YacC protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 172

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            +  D ETTGLD+   + +EIG V         R F+  L P      P A  +
Sbjct: 108 PVFLDTETTGLDA-GAQALEIGLVNARG----ERIFETRLKPT-VGIDPAAAAV 155


>gi|83747432|ref|ZP_00944471.1| Hypothetical Protein RRSL_02813 [Ralstonia solanacearum UW551]
 gi|207744752|ref|YP_002261144.1| hypothetical protein RSIPO_02965 [Ralstonia solanacearum IPO1609]
 gi|83725889|gb|EAP73028.1| Hypothetical Protein RRSL_02813 [Ralstonia solanacearum UW551]
 gi|206596162|emb|CAQ63089.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
          Length = 234

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 58/184 (31%), Gaps = 25/184 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ----VFLCPNGRKNS-------P 57
            +  DIE  G       ++   +   L       TF+          G           P
Sbjct: 39  YVSTDIEADGPIPGPHSMLSFASAAYLADKTLVGTFEANLETLPGAEGHPIQMQWWAQQP 98

Query: 58  EALKLHGITDEFLKDKP-SFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRI- 113
           EA           +  P +  +    + ++         ++A  A FD  F+   + R  
Sbjct: 99  EA-------WAACRHNPEAPEAALPRYVEWVESLPGKPVFVAFPAGFDFTFMFWYMMRFA 151

Query: 114 NKDPLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            + P   +   I TL+ A    P  RN   +   ++   + H   H AL D+     ++ 
Sbjct: 152 GRSPFGWAALDIKTLAFALTGLPYRRNVKAAFPAQWHDPLPH--THIALDDAKEQGALFC 209

Query: 173 KMMV 176
            M+ 
Sbjct: 210 NMLA 213


>gi|282163486|ref|YP_003355871.1| hypothetical protein MCP_0816 [Methanocella paludicola SANAE]
 gi|282155800|dbj|BAI60888.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 322

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 45/131 (34%), Gaps = 29/131 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  DIET GL S+   II  GA          R +        R    EA  +     
Sbjct: 148 RLVALDIETMGLFSRP--IILFGAAFTSGDKIVTRQY------LARDIDEEAAAI----- 194

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDT 126
                     S+F+   +     N   +++N + FDV +IN      +      +   D 
Sbjct: 195 ----------SLFTALVE-----NNPLVSYNGRAFDVPYINQRRWYYDLGGDIENVHFDM 239

Query: 127 LSIARRKHPSS 137
           L  ARR   S 
Sbjct: 240 LPFARRFMKSK 250


>gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39]
 gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39]
          Length = 937

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 32/139 (23%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I FD ETTG D+    ++ +                  + P      P       +  E 
Sbjct: 366 ISFDTETTGTDANLAELVGL---------------SFSVKPGAGYYIP-------LPPER 403

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
              +P    I  EF      +N   I  N K+D+  +      I           DT+  
Sbjct: 404 TLAQP----ILDEFKVVLENENIAKIGQNIKYDMLILKWYGLEIKGKLF------DTMLA 453

Query: 130 ARRKHPSSRNDLNSLCKRY 148
                P +R++++ L + Y
Sbjct: 454 HYLIDPDTRHNMDVLSENY 472


>gi|119482273|ref|XP_001261165.1| CAF1 family ribonuclease, putative [Neosartorya fischeri NRRL 181]
 gi|119409319|gb|EAW19268.1| CAF1 family ribonuclease, putative [Neosartorya fischeri NRRL 181]
          Length = 581

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 65/203 (32%), Gaps = 44/203 (21%)

Query: 64  GI--TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           GI  +   ++ K   +    +      E     + HN   D+ +      R    PL PS
Sbjct: 293 GIMASSAAVEPKYPLNEFSDKLKQRLKEHRPVLVGHNLFSDLIYFC----RCFFGPL-PS 347

Query: 122 RIIDTLSIARRKHP----------------SSRNDL----NSLCKRYGITISHRSKHG-- 159
           ++ +  S+A    P                + R+ L     +L K+    IS   +H   
Sbjct: 348 KVEEFQSMAHELFPVLMDTKYMATHNCGSINPRSSLSELNENLAKKAFPKISIHPQHSKY 407

Query: 160 --------ALLDSHLLSDVYIK----MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207
                   A  DS L + V+I+    +  GG ++     T + +     ++T   ++   
Sbjct: 408 TTQKIEHEAGYDSLLTAQVFIRLSAQLREGGVELPQQKSTKDAQDTSNLQQTYQEVASDA 467

Query: 208 RDKPLFTRITKEELDEHDKTIQT 230
             +      +      H    Q 
Sbjct: 468 YAEGRLQTTSGS---AHKTFEQK 487


>gi|260220806|emb|CBA28738.1| Oligoribonuclease [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 193

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 33/179 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGR---KNSP 57
           + K+    +  D E TGL+ + DR++EI  +    +  +        +  +     K   
Sbjct: 12  LIKSDKNLVWLDCEMTGLEPETDRLLEIAVIVTDPHLGQRVEGPVFVIHQSDAQLDKMDA 71

Query: 58  EALKLHGITDEFLKDKPSFSSI--------FSEFW-DFFNEQNAEWIAHNAKFDVGFINA 108
                HG     L DK   S++           F   +     +    +    D  F+  
Sbjct: 72  WNKGTHG--KSGLIDKVKASTVTEAEAEAALIAFLTPYVPAGASPMCGNTIGQDRRFLVK 129

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH----RSKHGALLD 163
            + ++  +     R +D             + L  L KR+   ++     + KH AL D
Sbjct: 130 YMPKL--EAFFHYRNLDV------------STLKELAKRWKPEVADSFKKQQKHTALAD 174


>gi|163802739|ref|ZP_02196629.1| oligoribonuclease [Vibrio sp. AND4]
 gi|159173446|gb|EDP58268.1| oligoribonuclease [Vibrio sp. AND4]
          Length = 181

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 52/173 (30%), Gaps = 21/173 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR----KNSP 57
           +  +    I  D+E TGLD +  +IIEI ++             V      +    K   
Sbjct: 1   MSFSDQNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPKEELAKMDE 60

Query: 58  EALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAEL 110
                H   G+ +     + S      +  +F  +      +    ++   D  F+   +
Sbjct: 61  WCTNTHTTSGLVERVCHSQISEQDAVEQTIEFLQKWVPRGVSPICGNSIGQDRRFLYKHM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +          + TL    R+       L+          S +  H AL D
Sbjct: 121 PDLEAYFHYRYLDVSTLKELTRRWKPE--VLD--------GFSKQGTHLALDD 163


>gi|330444995|ref|ZP_08308649.1| oligoribonuclease monomer [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328493113|dbj|GAA03146.1| oligoribonuclease monomer [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 181

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 54/174 (31%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCP---NGRKNSP 57
           +  +    I  D+E TGLD +  +IIEI  +             V  +        K   
Sbjct: 1   MTISDKNLIWIDLEMTGLDPETHKIIEIATIVTDPQLNILAEGPVLAIHQSEEELAKMDD 60

Query: 58  EALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAEL 110
                H   G+ D   K   +     ++   F  +      +    ++   D  F+   +
Sbjct: 61  WCTNTHTNSGLVDRIRKSTVTEQQAVAQTIAFLEQWVPKGVSPICGNSIGQDRRFLYKHM 120

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             + +        + TL  + RR  P     L+          S +  H AL D
Sbjct: 121 PELEQYFHYRYLDVSTLKELTRRWKPEL---LD--------GFSKKGSHLALDD 163


>gi|238756168|ref|ZP_04617488.1| Oligoribonuclease [Yersinia ruckeri ATCC 29473]
 gi|238705642|gb|EEP98039.1| Oligoribonuclease [Yersinia ruckeri ATCC 29473]
          Length = 181

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 5  NKMRKIVFDIETTGLDSKNDRIIEIG 30
          N+   I  D+E TGLD + DRIIEI 
Sbjct: 4  NENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|59712936|ref|YP_205712.1| oligoribonuclease [Vibrio fischeri ES114]
 gi|81310874|sp|Q5E2C2|ORN_VIBF1 RecName: Full=Oligoribonuclease
 gi|59481037|gb|AAW86824.1| oligoribonuclease [Vibrio fischeri ES114]
          Length = 181

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 37/181 (20%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--- 58
           +  N    I  D+E TGLD +  +IIEI ++                 P    + PE   
Sbjct: 1   MAINDQNLIWVDLEMTGLDPETHKIIEIASIVTDAQLNILAE-----GPVIAIHQPEEEL 55

Query: 59  ------ALKLHGITDEFL-----KDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDV 103
                     H  T+  L     + K    +  +E   F  +      +    ++   D 
Sbjct: 56  AKMDNWCTNTH--TNSGLVARVQESKYDEEAAIAETIAFLEQWVPKGVSPICGNSIGQDR 113

Query: 104 GFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
            F+   + R+ +        + T+  +ARR  P     L+   K           H AL 
Sbjct: 114 RFLYKHMPRLEEYFHYRYVDVSTIKELARRWKPE---VLDGFTKA--------GTHLALD 162

Query: 163 D 163
           D
Sbjct: 163 D 163


>gi|207722181|ref|YP_002252618.1| hypothetical protein RSMK03669 [Ralstonia solanacearum MolK2]
 gi|206587356|emb|CAQ17939.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
          Length = 234

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 58/184 (31%), Gaps = 25/184 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ----VFLCPNGRKNS-------P 57
            +  DIE  G       ++   +   L       TF+          G           P
Sbjct: 39  YVSTDIEADGPIPGPHSMLSFASAAYLADKTLVGTFEANLETLPGAEGHPIQMQWWAQQP 98

Query: 58  EALKLHGITDEFLKDKP-SFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRI- 113
           EA           +  P +  +    + ++         ++A  A FD  F+   + R  
Sbjct: 99  EA-------WAACRHNPEAPEAALPRYVEWVESLPGKPVFVAFPAGFDFTFMFWYMMRFA 151

Query: 114 NKDPLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
            + P   +   I TL+ A    P  RN   +   ++   + H   H AL D+     ++ 
Sbjct: 152 GRSPFGWAALDIKTLAFALTGLPYRRNVKAAFPAQWHDPLPH--THIALDDAKEQGALFC 209

Query: 173 KMMV 176
            M+ 
Sbjct: 210 NMLA 213


>gi|145631577|ref|ZP_01787343.1| oligoribonuclease [Haemophilus influenzae R3021]
 gi|144982777|gb|EDJ90303.1| oligoribonuclease [Haemophilus influenzae R3021]
          Length = 182

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          +  +K   I  D+E TGLD + +RIIEI  +        
Sbjct: 1  MSFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNI 39


>gi|240142208|ref|YP_002966718.1| putative Exodeoxyribonuclease I [Methylobacterium extorquens AM1]
 gi|240012152|gb|ACS43377.1| putative Exodeoxyribonuclease I [Methylobacterium extorquens AM1]
          Length = 491

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 63/208 (30%), Gaps = 45/208 (21%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL--LDYSKTN------RTFQVFLCPNG 52
           M        + +D ET+  D ++ +I +  AV     D  +T       R     +   G
Sbjct: 1   MTGTTNCDVVCWDTETSDTDVRHGQIFDFAAVTSNLTDLVETGTRTVRIRRLSYCIPAYG 60

Query: 53  R----KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ-NAEWI--AHNA-KFDVG 104
                +  P AL+    TDEF        S  +      + +     +   +N   FD  
Sbjct: 61  ALSTNRLDPYALEATDRTDEF--------SAAASIHGILSPKPGRPLVVLGYNILSFDEE 112

Query: 105 FINAELQRINKDPLDPS----RIIDTLSIARRKH--------------PSSRNDLNSLCK 146
            +     R   DP   S    R  D L  AR  H                    L  +  
Sbjct: 113 IVRTTFFRNLLDPYATSAKGVRRFDLLPAARLAHALDPDAFPAGQDDDGGPSFRLERIAP 172

Query: 147 RYGITISHRSKHGALLDSHLLSDVYIKM 174
             GI +     H AL D+     +  ++
Sbjct: 173 ANGIGL---RAHDALEDARATLALARRL 197


>gi|332840879|ref|XP_522564.3| PREDICTED: DNA polymerase epsilon catalytic subunit A, partial [Pan
           troglodytes]
          Length = 859

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 31/164 (18%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 308 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEG- 366

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKD---- 116
                  + ++P  + +   +++   E +    + +N   FD  F+ A            
Sbjct: 367 ----PFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVHGLSMQQE 422

Query: 117 -----------PLDPSRIIDTLSIARR--KHPSSRNDLNSLCKR 147
                             +D L   +R    P   ++L +  K 
Sbjct: 423 IGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKA 466


>gi|260844508|ref|YP_003222286.1| putative exonuclease [Escherichia coli O103:H2 str. 12009]
 gi|257759655|dbj|BAI31152.1| putative exonuclease [Escherichia coli O103:H2 str. 12009]
          Length = 816

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 45/195 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALK------- 61
            D+ET G +  +  II IGA+       +    F   +     G     + +K       
Sbjct: 638 IDLETMGKNP-DAPIISIGAIFFDPQTGEMGPEFSKTIDLETAGGVIDRDTIKWWLKQSR 696

Query: 62  ------LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINAELQ 111
                 L         D+        +  +F +E + E+      + A FD   +    +
Sbjct: 697 EAQSAILT--------DEIPLDDALLQLREFIDENSGEFFVQVWGNGATFDNVILRRSYE 748

Query: 112 RINKDPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           R            R + T+                   R  I      +H AL D+   +
Sbjct: 749 RQGIPCPWRYTNDRDVRTMVALGLVMDFD--------ARTTIPFEGE-RHNALNDARYQA 799

Query: 169 D----VYIKMMVGGS 179
                ++ K++   +
Sbjct: 800 KYVSAIWQKLLPSQA 814


>gi|71282475|ref|YP_271028.1| oligoribonuclease [Colwellia psychrerythraea 34H]
 gi|123630997|sp|Q47VZ4|ORN_COLP3 RecName: Full=Oligoribonuclease
 gi|71148215|gb|AAZ28688.1| oligoribonuclease [Colwellia psychrerythraea 34H]
          Length = 181

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 35/177 (19%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-------- 56
           N    I  D+E TGL+   D I+EI  +       T+    +         S        
Sbjct: 4   NDSNLIWLDLEMTGLEPVEDVILEIAII------ITDSELNILAQGPIFAISQTDDVLDN 57

Query: 57  --PEALKLHGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
             P  ++ HG +       D  +    +     +   ++  +  +    ++   D  FIN
Sbjct: 58  MNPWCIEHHGKSGLTQRCRDSEVSLAHATKESLAFVQEWVPQGKSPMCGNSIGQDRRFIN 117

Query: 108 AELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +          +  + T+  +A+R  P     L S+ K           H AL D
Sbjct: 118 KYMPDFEDHFHYRNLDVSTIKELAKRWKPE---VLESVVK--------TGAHLALDD 163


>gi|52842945|ref|YP_096744.1| oligoribonuclease [Legionella pneumophila subsp. pneumophila str.
          Philadelphia 1]
 gi|54295579|ref|YP_127994.1| oligoribonuclease [Legionella pneumophila str. Lens]
 gi|54298733|ref|YP_125102.1| oligoribonuclease [Legionella pneumophila str. Paris]
 gi|148358519|ref|YP_001249726.1| oligoribonuclease [Legionella pneumophila str. Corby]
 gi|296108393|ref|YP_003620094.1| putative ACR [Legionella pneumophila 2300/99 Alcoy]
 gi|59797992|sp|Q5WT59|ORN_LEGPL RecName: Full=Oligoribonuclease
 gi|59797993|sp|Q5X1E6|ORN_LEGPA RecName: Full=Oligoribonuclease
 gi|59797999|sp|Q5ZRY0|ORN_LEGPH RecName: Full=Oligoribonuclease
 gi|166216265|sp|A5IAI0|ORN_LEGPC RecName: Full=Oligoribonuclease
 gi|52630056|gb|AAU28797.1| oligoribonuclease [Legionella pneumophila subsp. pneumophila str.
          Philadelphia 1]
 gi|53752518|emb|CAH13950.1| hypothetical protein lpp2797 [Legionella pneumophila str. Paris]
 gi|53755411|emb|CAH16907.1| hypothetical protein lpl2666 [Legionella pneumophila str. Lens]
 gi|148280292|gb|ABQ54380.1| oligoribonuclease [Legionella pneumophila str. Corby]
 gi|295650295|gb|ADG26142.1| putative ACR [Legionella pneumophila 2300/99 Alcoy]
 gi|307611619|emb|CBX01303.1| hypothetical protein LPW_30001 [Legionella pneumophila 130b]
          Length = 187

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 3  RKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
           KN    I  D+E TGL+ + DRIIE+  +
Sbjct: 1  MKNNQNLIWIDLEMTGLEPEQDRIIEMATI 30


>gi|293414531|ref|ZP_06657180.1| exoO exonuclease VIII [Escherichia coli B185]
 gi|291434589|gb|EFF07562.1| exoO exonuclease VIII [Escherichia coli B185]
          Length = 824

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 63/187 (33%), Gaps = 26/187 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFL----------CPNGRKNSPEAL 60
            D+ET G    N  I+ IGAV       +   TF + +           P+G        
Sbjct: 643 IDLETMG-KKSNAPIVVIGAVFFDPQTGEIGPTFYIVISLVDAMDTGAVPDGSTIEWWLA 701

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRINKD 116
           +        L D+        +F +F NE    +  +   + A FD   +    +R+N  
Sbjct: 702 QSSEARSAILVDQVKLVDALIQFREFINEYSNEKFVQVWGNGATFDNTILRTSYERLNIP 761

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD----VYI 172
              P R  +   +          D ++   R  I      +H AL D+   +     ++ 
Sbjct: 762 --CPWRYYNDRDVRTIVELGKTIDFDA---RTVIPFEG-VRHHALDDARHQAKYVSAIWQ 815

Query: 173 KMMVGGS 179
           K++   +
Sbjct: 816 KLIPNQA 822


>gi|293393576|ref|ZP_06637886.1| exodeoxyribonuclease VIII [Serratia odorifera DSM 4582]
 gi|291423911|gb|EFE97130.1| exodeoxyribonuclease VIII [Serratia odorifera DSM 4582]
          Length = 192

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 56/206 (27%)

Query: 7   MRKIVFDIET--TGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFL----------CPNGR 53
           M  ++ D+ET  TG+D+    I  IGAV        T   F   +           P+G 
Sbjct: 1   MNHLMIDLETLGTGVDAP---IAAIGAVFFEPSTGCTGARFYTRVDFISDMEQGAKPDGY 57

Query: 54  KN------SPEALKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAE--------WIAHN 98
                   S EA        E + D  P      +   DF  E+NA            + 
Sbjct: 58  TIKWWLKQSSEARA------ELVADDAPLAWEALTRLHDFI-EKNAIPNDLKFLQVWGNG 110

Query: 99  AKFDVGFINAELQRINKD-PLDPSRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISH 154
           A FD   + A   R + + P       D    + + R      + +          +  +
Sbjct: 111 ASFDCVLLRAAFGRADLEIPWQWWNDRDVRTVVEMGRALGFDPKRN----------SPFN 160

Query: 155 RSKHGALLDS--HLL--SDVYIKMMV 176
             +H AL D+    L  S+++ ++  
Sbjct: 161 GERHNALDDAVHQALYVSEIWQRLTT 186


>gi|260844434|ref|YP_003222212.1| putative exonuclease [Escherichia coli O103:H2 str. 12009]
 gi|257759581|dbj|BAI31078.1| putative exonuclease [Escherichia coli O103:H2 str. 12009]
          Length = 823

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 45/195 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALK------- 61
            D+ET G +  +  II IGA+       +    F   +     G     + +K       
Sbjct: 645 IDLETMGKNP-DAPIISIGAIFFDPQTGEMGPEFSKTIDLETAGGVIDRDTIKWWLKQSR 703

Query: 62  ------LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINAELQ 111
                 L         D+        +  +F +E + E+      + A FD   +    +
Sbjct: 704 EAQSAILT--------DEIPLDDALLQLREFIDENSGEFFVQVWGNGATFDNVILRRSYE 755

Query: 112 RINKDPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           R            R + T+                   R  I      +H AL D+   +
Sbjct: 756 RQGIPCPWRYTNDRDVRTMVALGLVMDFD--------ARTTIPFEGE-RHNALNDARYQA 806

Query: 169 D----VYIKMMVGGS 179
                ++ K++   +
Sbjct: 807 KYVSAIWQKLLPSQA 821


>gi|145538409|ref|XP_001454910.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124422687|emb|CAK87513.1| unnamed protein product [Paramecium tetraurelia]
          Length = 516

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 69/226 (30%), Gaps = 47/226 (20%)

Query: 42  RTFQVFLCPNGRKNSPEAL-----KLHGITDEFLKDKPSFSSIFS-----------EFWD 85
           +    +L    +    E+L     K+  +T+   + K     +             + W+
Sbjct: 195 KVIYTYLEAYQKNMIGESLLKGEMKITKLTNAEKQAKDEEKYLLKTNRFQTKTGFYQIWE 254

Query: 86  FFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---------DPSRIIDTLSIARRKHPS 136
                    + HN   D+ F  +   +                   I DT  I +   P 
Sbjct: 255 CILNSKKYIVGHNCFADIMFCYSHFVQCPPISWEEFKEDVVKHWPPIYDTKYIIQSAQPL 314

Query: 137 SR--------NDLNSLCKRYG---------ITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
            +          + +L +            + +   + H A  D+++   ++I +    +
Sbjct: 315 EKIRSKFETSTSVENLAEFIKNNMNYIQIDVNLDQNAYHTAGFDAYMTGFIFINLTKDFT 374

Query: 180 QINFGFKTNEDRFFKEEKK----TVPNISLLKRDKPLFTRITKEEL 221
           Q     + N+   FK        T  +I L ++   ++ +  +EE 
Sbjct: 375 QQELLSQKNKLNQFKNNYSINLNTAEDIKLTQK-YIIYIKFPEEER 419


>gi|299065246|emb|CBJ36412.1| conserved protein of unknown function [Ralstonia solanacearum
           CMR15]
          Length = 226

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 58/183 (31%), Gaps = 23/183 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ----VFLCPNGRKNS-------P 57
            +  DIE  G       ++   +   L       TF+          G           P
Sbjct: 31  YVSTDIEADGPIPGPHSMLSFASAAYLADKTLVGTFEANLETLPGAEGHPIQMQWWAQQP 90

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRI-N 114
           EA           +D  +  +    + ++         ++A  A FD  F+   + R   
Sbjct: 91  EAWA------ACRRDLEAPEAALPRYVEWVESLPGKPVFVAFPAGFDFTFMFWYMMRFAG 144

Query: 115 KDPLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + P   +   I TL+ A    P  RN   +   ++   + H   H AL D+     ++  
Sbjct: 145 RSPFGWAALDIKTLAFALTGLPYRRNVKAAFPAQWHDPLPH--THIALDDAKEQGALFCN 202

Query: 174 MMV 176
           M+ 
Sbjct: 203 MLA 205


>gi|167470349|ref|ZP_02335053.1| ribonuclease T [Yersinia pestis FV-1]
          Length = 64

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVE 33
           +V D+ET G ++++D ++EI AV 
Sbjct: 30 PVVIDVETAGFNAQSDALLEIAAVT 54


>gi|59712637|ref|YP_205413.1| exodeoxyribonuclease VIII [Vibrio fischeri ES114]
 gi|59480738|gb|AAW86525.1| exodeoxyribonuclease VIII [Vibrio fischeri ES114]
          Length = 184

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 57/191 (29%), Gaps = 32/191 (16%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           M+ ++ D+ET G +     I+ IGA    +   +   TF   +       S   +    +
Sbjct: 1   MKDLMLDLETMG-NGSEAAIMSIGACYFDIKTGEIGNTFHKQINLESAVESGLVIDASTV 59

Query: 66  TDEFLK------------DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
                +            D      + +EF  F       W  + A FD   +    ++ 
Sbjct: 60  LWWMKQSEEARSKFYDNDDAFGIHHVLAEFASFVEPHVKVW-GNGATFDNVILKNAYKQC 118

Query: 114 NKDPLDPSRIID----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169
                  +   D    T+    R+                +      KH AL D+   + 
Sbjct: 119 LNMDAPWAFYNDMDVRTMVRLGREVGFDPKK--------DMPFEG-VKHDALADAIHQAK 169

Query: 170 ----VYIKMMV 176
               +Y K++ 
Sbjct: 170 YVSAIYQKLIT 180


>gi|253690114|ref|YP_003019304.1| Exonuclease RNase T and DNA polymerase III [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756692|gb|ACT14768.1| Exonuclease RNase T and DNA polymerase III [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 180

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 14/148 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG----RKNS 56
           M+ +N +  I  D+E TGL+ + DRIIEI  +             V              
Sbjct: 1   MVDENNL--IWIDLEMTGLNPERDRIIEIATLVTDANLNVLAEGPVLAVHQSDSQLALMD 58

Query: 57  PEALKLH---GITD----EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
              ++ H   G+TD        ++ +     +    +     +    ++   D  F+   
Sbjct: 59  DWNVRTHGASGLTDRVKASTTDERAAELETLAFLQKWVPAGKSPICGNSIGQDRRFLFRY 118

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPS 136
           +  +          + TL  +ARR  P 
Sbjct: 119 MPELEAYFHYRYLDVSTLKELARRWKPE 146


>gi|260941269|ref|XP_002614801.1| hypothetical protein CLUG_05579 [Clavispora lusitaniae ATCC 42720]
 gi|238851987|gb|EEQ41451.1| hypothetical protein CLUG_05579 [Clavispora lusitaniae ATCC 42720]
          Length = 281

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 81/220 (36%), Gaps = 27/220 (12%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY----SKTNRTFQVFL-----CPNGRK 54
             +   +  D+E    DS++   I +   + +D         RT  + +       NGR 
Sbjct: 42  LREHPLVAIDVEAWERDSRHITEIGVAVYDPVDQYLSAQPYIRTLHILVEENRHRTNGRY 101

Query: 55  NSPEALKLH-GITDEF--LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAEL 110
               + + + G++      + +     I ++   +   +    + H+ + DV ++ +  +
Sbjct: 102 VPDNSGRFNNGVSYRMSSAESRGLLREILAQ---YLTARRGVLVGHSLRGDVAWLASHGV 158

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                + +D  +      ++RR+  S R  L ++       I H + H A  D++     
Sbjct: 159 DVAGVETVDTEQ---VHRLSRREGGSVRGLLRTM------QIPHSNLHNAGNDAYYTLLA 209

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
            +  +    +  FG   +E+   ++E   VP     K  K
Sbjct: 210 ALAYLDPAQRTRFGL--DEEAPPRDETAVVPGQKSAKARK 247


>gi|260582817|ref|ZP_05850603.1| oligoribonuclease [Haemophilus influenzae NT127]
 gi|260094143|gb|EEW78045.1| oligoribonuclease [Haemophilus influenzae NT127]
          Length = 182

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          +  +K   I  D+E TGLD + +RIIEI  +        
Sbjct: 1  MSFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNI 39


>gi|118594944|ref|ZP_01552291.1| oligoribonuclease [Methylophilales bacterium HTCC2181]
 gi|118440722|gb|EAV47349.1| oligoribonuclease [Methylophilales bacterium HTCC2181]
          Length = 182

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 13/137 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG----RKNS 56
           M  KN    I  D+E +GLD +ND+++EI  V    +        VF+         +  
Sbjct: 1   MDEKNNNNLIWLDMEMSGLDPENDKVLEIAVVITDPFLTIIAESPVFVIHQEDAVLARMD 60

Query: 57  PEALKLHGITD--EFLKD-KPSFSSIFSEFWDF----FNEQNAEWIAHNAKFDVGFINAE 109
                 HG +   E +K+ K +   +  +  +F      +  +    ++   D  F+   
Sbjct: 61  AWNQGTHGKSGLIEKVKNSKHNEEGVTRQLLEFMAKYVGKNKSPMCGNSICQDRRFMAKH 120

Query: 110 LQRINKDPLDPSRIIDT 126
           +  +  +     R +D 
Sbjct: 121 MPEL--ESFFHYRNLDV 135


>gi|260854265|ref|YP_003228156.1| putative exonuclease [Escherichia coli O26:H11 str. 11368]
 gi|257752914|dbj|BAI24416.1| putative exonuclease [Escherichia coli O26:H11 str. 11368]
          Length = 816

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 45/195 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALK------- 61
            D+ET G +  +  II IGA+       +    F   +     G     + +K       
Sbjct: 638 IDLETMGKNP-DAPIISIGAIFFDPQTGEMGPEFSKTIDLETAGGVIDRDTIKWWLKQSR 696

Query: 62  ------LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINAELQ 111
                 L         D+        +  +F +E + E+      + A FD   +    +
Sbjct: 697 EAQSAILT--------DEIPLDDALLQLREFIDENSGEFFVQVWGNGATFDNVILRRSYE 748

Query: 112 RINKDPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           R            R + T+                   R  I      +H AL D+   +
Sbjct: 749 RQGIPCPWRYTNDRDVRTMVALGLVMDFD--------ARTTIPFEGE-RHNALNDARYQA 799

Query: 169 D----VYIKMMVGGS 179
                ++ K++   +
Sbjct: 800 KYVSAIWQKLLPSQA 814


>gi|156844039|ref|XP_001645084.1| hypothetical protein Kpol_1035p39 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115740|gb|EDO17226.1| hypothetical protein Kpol_1035p39 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 263

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 19/154 (12%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNGRKNS- 56
           K   +  D E TGL+  ND IIEI  +                +  ++  +  +    S 
Sbjct: 40  KNPVVWIDCEMTGLNHVNDHIIEICCIVTDGDMNVVKDPGTGEDNVYESVIHYDEEVMSK 99

Query: 57  --PEALKLH---GITDEFLKDKPSFS----SIFSEFWDFFNEQNA-EWIAHNAKFDVGFI 106
                +  H   G+T++ LK   S S     +      +  E N      ++   D  F+
Sbjct: 100 MNEWCIDQHGKSGLTEKVLKSNKSLSRVQQELIRHVKKYIPEPNKGVLAGNSVHMDRLFL 159

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRND 140
             E   +          + ++    R+H +  N 
Sbjct: 160 INEFPSLIDHLFYRIIDVSSIMEVCRRHNNPLNS 193


>gi|241662497|ref|YP_002980857.1| oligoribonuclease [Ralstonia pickettii 12D]
 gi|309781079|ref|ZP_07675817.1| oligoribonuclease [Ralstonia sp. 5_7_47FAA]
 gi|240864524|gb|ACS62185.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
           12D]
 gi|308920145|gb|EFP65804.1| oligoribonuclease [Ralstonia sp. 5_7_47FAA]
          Length = 215

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 27/174 (15%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK----NSPEA 59
           K+    I  D+E TGL  +NDRIIE+  V             V +     +         
Sbjct: 21  KSDNNLIWLDMEMTGLSPENDRIIEVAVVVTDSELNILAEGPVLVIHQSDELLDGMDAWN 80

Query: 60  LKLHGITDEFLKDKPSFSSIFSE---------FWDFFNEQNAEWIAHNAKFDVGFINAEL 110
              HG     L DK   S+                +  +  +    ++   D  F+   +
Sbjct: 81  KGTHG--RSGLIDKVKASTTTEAEAEAELLAFLRKWVPKSKSPMCGNSICQDRRFMARYM 138

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++ +     +  + TL  + +R  P       ++ K      +   +H A  D
Sbjct: 139 PKLEEYFHYRNLDVSTLKELCKRWQP-------AIAK----GFTKHQRHTAFAD 181


>gi|332019185|gb|EGI59695.1| DNA polymerase epsilon catalytic subunit A [Acromyrmex echinatior]
          Length = 2242

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 77/218 (35%), Gaps = 49/218 (22%)

Query: 1   MIRKNKMRKIVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT-FQVFLCPNGR 53
           MI   +   + +DIETT L     D+  D+I+ I   ++   Y  TNR      +     
Sbjct: 259 MIEPPEPIVLAYDIETTKLPLKFPDASIDQIMMISYMIDGQGYLITNRELISADIQDFEY 318

Query: 54  KNSPEAL-KLHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAEL 110
              PE            + ++P+  +  ++F+D  NE +   ++ +N   FD  F+ A  
Sbjct: 319 TPKPEFEGPFT------IFNEPNEKAAITKFFDHINEIRPHIFVTYNGDFFDWPFVEARA 372

Query: 111 QRINKDPLDP---------------SRIIDTLSIARR--KHPSSRNDLNSLCK---RYG- 149
              N D  +                +  +D L   RR    P    +L ++ K   RY  
Sbjct: 373 AVHNMDMKEKIGFYKNREGVYVSRAAMHMDCLCWVRRDSYLPVGSQNLKAVAKAKLRYDP 432

Query: 150 ITISHRSKHG------------ALLDSHLLSDVYIKMM 175
           + +                   ++ D+     +Y K +
Sbjct: 433 VELDPEDMCRLASEEPEILANYSVSDAVATFYLYQKYI 470


>gi|302693751|ref|XP_003036554.1| hypothetical protein SCHCODRAFT_44873 [Schizophyllum commune H4-8]
 gi|300110251|gb|EFJ01652.1| hypothetical protein SCHCODRAFT_44873 [Schizophyllum commune H4-8]
          Length = 376

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 34/180 (18%)

Query: 3   RKNKMRKIVFDIE---TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPE 58
           R+  +  I  D E   TTG        + +  V L+D +     F  F+    G K    
Sbjct: 216 RRTTLDVIALDCEMIYTTGG-------MRVARVSLIDGAGAT-IFDDFVKMDEGVKVLDY 267

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             +  GI  E L+      +   E      + ++  + H  + D+  +           +
Sbjct: 268 NTRFSGIKPEHLERATHDLAGIRERLHALMDADSILVGHALENDLKTLR----------I 317

Query: 119 DPSRIIDTLSIARRKHPSS-----RNDLNSLC-KRYGITISHRSK--HGALLDSHLLSDV 170
              R +DT        P       R  L  L  +  G+ I   +   H +  D+ +  D+
Sbjct: 318 IHHRCVDTA----LLFPHGSGAPYRKALRDLAREHLGVVIQQSTTAGHSSAEDASVTLDL 373


>gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 918

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 27/139 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    RI+  G    ++  K       ++ P G       ++L        
Sbjct: 342 AFDTETTSLDYMEARIV--GVSFAVEAGK-----AAYV-PFGHDYLGAPVQLT------- 386

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                 + +  +      +     +  N K+D   +      +N D        DT+  +
Sbjct: 387 -----EAVVLGKLKPLLEDPTRLKVGQNLKYDRNVL------LNHDIDLQGIAYDTMLES 435

Query: 131 RRKHPS-SRNDLNSLCKRY 148
              + + SR+D++SL KRY
Sbjct: 436 YVLNSTASRHDMDSLAKRY 454


>gi|145629185|ref|ZP_01784984.1| oligoribonuclease [Haemophilus influenzae 22.1-21]
 gi|145639128|ref|ZP_01794735.1| oligoribonuclease [Haemophilus influenzae PittII]
 gi|148827138|ref|YP_001291891.1| oligoribonuclease [Haemophilus influenzae PittGG]
 gi|166216262|sp|A5UFF2|ORN_HAEIG RecName: Full=Oligoribonuclease
 gi|144978688|gb|EDJ88411.1| oligoribonuclease [Haemophilus influenzae 22.1-21]
 gi|145271690|gb|EDK11600.1| oligoribonuclease [Haemophilus influenzae PittII]
 gi|148718380|gb|ABQ99507.1| oligoribonuclease [Haemophilus influenzae PittGG]
 gi|309750709|gb|ADO80693.1| Oligoribonuclease [Haemophilus influenzae R2866]
          Length = 182

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          +  +K   I  D+E TGLD + +RIIEI  +        
Sbjct: 1  MSFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNI 39


>gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
 gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
          Length = 924

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 42/146 (28%), Gaps = 32/146 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R + + ++  D ETT  ++    ++ I                 +  P            
Sbjct: 348 RLDGLERLAIDTETTSTEAMWASLVGIAFSWEKGQG--------YYVPTP---------- 389

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                  L D     ++             + +  N K+D+  +      +      P  
Sbjct: 390 -------LPDGTPTETVLERLAPILRRAQRK-VGQNLKYDLVVLAQHGVEV------PPP 435

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
             DT+       P   ++L+ L ++Y
Sbjct: 436 YFDTMVAHYLIAPEEPHNLDVLARQY 461


>gi|241949359|ref|XP_002417402.1| RNA-binding protein, putative [Candida dubliniensis CD36]
 gi|223640740|emb|CAX45053.1| RNA-binding protein, putative [Candida dubliniensis CD36]
          Length = 767

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 29/172 (16%)

Query: 9   KIVFDIETTGLDS------KNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNSPEAL 60
            I+  I TT  DS       +  +IE  A E +D    +  +     + P     +P   
Sbjct: 5   YIIIHISTTCDDSPTFVTKDSSELIEF-AWETVDSVTLDTVYKGSNLVRPTNTPITPYCS 63

Query: 61  KLHGITDEFLKDKPSFSSIFSEF----WDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           K+H I+ + +K+  SF    ++F     ++   Q  E+      FD+  +  +L R  +D
Sbjct: 64  KIHRISWDNVKNAGSFKDAITKFDQYVQEYIISQKKEFSI--VMFDISKLRVQLVREARD 121

Query: 117 -------PLDPSRIIDT---LSIARRKHPS----SRNDLNSLCKRYGITISH 154
                   L   RI D     S  +  HP         L ++     + + +
Sbjct: 122 KSVVLPSYLQHPRIFDLPREYSNWQSSHPETLSYPPTSLTNIITALEVDVEN 173


>gi|58258529|ref|XP_566677.1| oligoribonuclease [Cryptococcus neoformans var. neoformans JEC21]
 gi|57222814|gb|AAW40858.1| oligoribonuclease, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 184

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 15/151 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNS---P 57
           +  +    +  D E TGLD  NDRIIEI  +      +  +      +            
Sbjct: 6   LLYDDGPLVWVDCEMTGLDFLNDRIIEIAVIITDGRLNPVDGGISYIIKTPKEVLDNMGD 65

Query: 58  EALKLH---GITDEFLKDKPS-----FSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINA 108
              + H   G+    L D P         +      +  E+ A  +A  +   D+ F+  
Sbjct: 66  WCREQHGKSGLIQACL-DSPYSYDTVVEKVLDYIRRWIPERGAGLLAGSSVHADMRFMLM 124

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSR 138
            +  + K        + ++  I RR +P  R
Sbjct: 125 GMPEVMKHLSYRILDVSSVKEICRRWYPKVR 155


>gi|311748418|ref|ZP_07722203.1| hypothetical protein ALPR1_19118 [Algoriphagus sp. PR1]
 gi|126576930|gb|EAZ81178.1| hypothetical protein ALPR1_19118 [Algoriphagus sp. PR1]
          Length = 249

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 36/151 (23%)

Query: 75  SFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFIN-----------AELQRINKDPLDPSR 122
               +  +F     ++     AHN  +FD  ++              LQ   K P +  R
Sbjct: 97  DERELLLDFNTLLEKKKWILCAHNGKEFDFPYLCRRMLVQGVTLPEPLQIAGKKPWEV-R 155

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITIS---------HRSKHGALL----------- 162
            +DTL + +         L  L   +GI  S         + + H  L            
Sbjct: 156 HLDTLELWKFGDYKHYTRLELLAAVFGIPTSKDDLDGSQVNTTFH--LEKNINRIKKYCR 213

Query: 163 -DSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
            D  + + VY+ M     ++       ED  
Sbjct: 214 KDVEVTARVYLAMHPQLDEMELEMVHLEDSP 244


>gi|19113491|ref|NP_596699.1| RNA exonuclease [Schizosaccharomyces pombe 972h-]
 gi|7227906|sp|O94626|ORN_SCHPO RecName: Full=Probable oligoribonuclease
 gi|4456822|emb|CAB37438.1| RNA exonuclease [Schizosaccharomyces pombe]
          Length = 180

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 25/171 (14%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP---EALK 61
           K   +  D E TGL+     ++E+ A+    +       F   +  + ++ S      ++
Sbjct: 5   KQPLVWIDCEMTGLEVGKHVLMEVAAIITDGNLRPVEEKFDAVIKLDEKQLSEMNDWCIE 64

Query: 62  LHGIT--DEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRI 113
            HG +   E  +      K   + + +    +  ++    IA N+   DV F++ E+ +I
Sbjct: 65  QHGKSGLTERCRQSNLTVKDVENQLLAYIKKYIPKKREALIAGNSVHADVRFLSVEMPKI 124

Query: 114 NKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +        + T+  +A+R  P                   +  H AL D
Sbjct: 125 IEHLHYRIIDVSTIKELAKRWCPDIP------------AYDKKGDHRALSD 163


>gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518']
          Length = 924

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 42/146 (28%), Gaps = 32/146 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R + + ++  D ETT  ++    ++ I                 +  P            
Sbjct: 348 RLDGLERLAIDTETTSTEAMWASLVGIAFSWEKGQG--------YYVPTP---------- 389

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                  L D     ++             + +  N K+D+  +      +      P  
Sbjct: 390 -------LPDGTPTETVLERLAPILRRAQRK-VGQNLKYDLVVLAQHGVEV------PPP 435

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
             DT+       P   ++L+ L ++Y
Sbjct: 436 YFDTMVAHYLIAPEEPHNLDVLARQY 461


>gi|308504273|ref|XP_003114320.1| hypothetical protein CRE_27458 [Caenorhabditis remanei]
 gi|308261705|gb|EFP05658.1| hypothetical protein CRE_27458 [Caenorhabditis remanei]
          Length = 565

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 39/134 (29%)

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-----------QRINKDPLDPSRIIDT 126
              S   +         + HN+  D  ++               +R         +IIDT
Sbjct: 258 EGISAILEAAMMMRKVIVGHNSLLDAMYLYHYFFAPLPQNYNAFKRQFHGLFP--KIIDT 315

Query: 127 LSIA---RRKHPSSRNDLNSLCKRYGITISHRS-----------------------KHGA 160
             IA   R + P   + L  L   +G   S+++                        H A
Sbjct: 316 KLIAQSLRIELPGVGDSLEKLGDYFGTEKSNKTVPPELRGYIGPWMNPLDDDSENVYHNA 375

Query: 161 LLDSHLLSDVYIKM 174
             DS++  +V++K+
Sbjct: 376 GFDSYITGEVFLKL 389


>gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
 gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
          Length = 914

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 26/138 (18%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D ETT LD  N +++ I                + + P      P A   H  + E  
Sbjct: 340 AIDTETTSLDVMNAKLVGI---------------SLSIEPGHAAYIPLA---HH-SMEQ- 379

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++    S+  +   +        +  N K+D   +     R+         + DTL  +
Sbjct: 380 SEQLPLQSVLDKLKPWLENPKKHKVGQNLKYDSHVLANYGIRL------QGIVHDTLLES 433

Query: 131 RRKHPSSRNDLNSLCKRY 148
                  R+D++SL +R+
Sbjct: 434 YVLESHRRHDMDSLSERF 451


>gi|146310013|ref|YP_001175087.1| oligoribonuclease [Enterobacter sp. 638]
 gi|166918639|sp|A4W5Q6|ORN_ENT38 RecName: Full=Oligoribonuclease
 gi|145316889|gb|ABP59036.1| Exonuclease, RNase T and DNA polymerase III [Enterobacter sp. 638]
          Length = 181

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 55/190 (28%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  ++   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSADENNLIWIDLEMTGLDPERDRIIEIA---------------TLVTDANLNILAEGPT 45

Query: 60  LKLHGITDEFLK-----------------------DKPSFSSIFS-EFWD-FFNEQNAEW 94
           + +H  +D  L                             + + + EF   +     +  
Sbjct: 46  IAVHQ-SDAQLALMDDWNVRTHTGSGLVERVKASTQGDREAELATIEFLKQWIPAGKSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+           
Sbjct: 105 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFK 153

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 154 KQGTHQAMDD 163


>gi|313230044|emb|CBY07748.1| unnamed protein product [Oikopleura dioica]
          Length = 870

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 22/168 (13%)

Query: 28  EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPS-FSSIFSEFWDF 86
           E+  V ++D    +     F  P G        K  GIT+  LK+  S    +  +   +
Sbjct: 715 ELARVTVID-ENMDLVLDSFCKPRGAILDYN-EKYSGITEADLKNITSDLREVQKKVRYY 772

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLC 145
            +E++   + H+   D+  +           +   + +DT +    +K    +  L +L 
Sbjct: 773 ISEED-ILVGHSLDSDLKALK----------IHHKKCVDTSVVYPHKKGLPYKRGLKTLM 821

Query: 146 -KRYGITISHRSKHGALL-----DSHLLSDV-YIKMMVGGSQINFGFK 186
            +  G  I   +  GA       D+     + + K+        F   
Sbjct: 822 REECGKVIQEETADGAYGHDSSEDAKAALQLMFKKLEEDQKAGKFADD 869


>gi|313216263|emb|CBY37604.1| unnamed protein product [Oikopleura dioica]
          Length = 892

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 22/168 (13%)

Query: 28  EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPS-FSSIFSEFWDF 86
           E+  V ++D    +     F  P G        K  GIT+  LK+  S    +  +   +
Sbjct: 737 ELARVTVID-ENMDLVLDSFCKPRGAILDYN-EKYSGITEADLKNITSDLREVQKKVRYY 794

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLC 145
            +E++   + H+   D+  +           +   + +DT +    +K    +  L +L 
Sbjct: 795 ISEED-ILVGHSLDSDLKALK----------IHHKKCVDTSVVYPHKKGLPYKRGLKTLM 843

Query: 146 -KRYGITISHRSKHGALL-----DSHLLSDV-YIKMMVGGSQINFGFK 186
            +  G  I   +  GA       D+     + + K+        F   
Sbjct: 844 REECGKVIQEETADGAYGHDSSEDAKAALQLMFKKLEEDQKAGKFADD 891


>gi|288800530|ref|ZP_06405988.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332743|gb|EFC71223.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
          Length = 921

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 32/141 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D ETT L++    ++ +                  + P      P       I +
Sbjct: 349 RIVSLDTETTSLNALEAELVGL---------------SFSVSPQEAFYVP-------IPN 386

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E    +     I + F   +  +  E +  N K+D+  +       N        + DT+
Sbjct: 387 E----QQKAQKIVNAFQPLYENEEIEKVGQNIKYDIEVLR------NYGITMKGPLFDTM 436

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P  R++++ + + Y
Sbjct: 437 IAHYLLQPELRHNMDDMAETY 457


>gi|313834343|gb|EFS72057.1| hypothetical protein HMPREF9617_00767 [Propionibacterium acnes
          HL056PA1]
          Length = 192

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
          ++ D ETT LD    RIIEI  ++    +         + P      P A 
Sbjct: 12 VILDTETTDLD---GRIIEISIIDAATGTVL---MDQLINPTLLDIPPGAE 56


>gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4]
 gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4]
          Length = 917

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    R++ +                  + P      P A +        L
Sbjct: 343 AFDTETTSLDPMTARLVGL---------------SFSVEPGKAAYLPVAHR-----GPDL 382

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++     + +    +    + + +  + K+D   +       N D        DTL  +
Sbjct: 383 PEQLPLDDVLARLKPWLEAADRKKVGQHLKYDAQVL------ANYDIALNGIEHDTLLES 436

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 437 YVLESHRTHDMDSLALRHLGV 457


>gi|320037088|gb|EFW19026.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 418

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 62/201 (30%), Gaps = 21/201 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D E           + I A++ L  S         + P+ R       K  GIT+  
Sbjct: 194 IALDCEMVST-IAGQYPVSISAIDYLTGSVLIN---YLIKPSVRVLDWR-TKFSGITEAM 248

Query: 70  LKDK-------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           +          P + +  +  W +   Q    I  +   D+  +     R+         
Sbjct: 249 VTQAVTDGTALPHWEAARALLWTYMTPQ-TILIGQSLYNDLNALGMVHTRV------VDS 301

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            I T     ++   S   L  LC  + GITI     H +L D+    +V +  +    ++
Sbjct: 302 EILTRHAVGKEFARSW-GLKRLCGLFLGITIQEGEGHDSLEDAFAAREVVLWCLNNTEKL 360

Query: 182 NFGFKTNEDRFFKEEKKTVPN 202
                   +   +E+      
Sbjct: 361 AAWAGEQRNALIQEQNAAKER 381


>gi|309780473|ref|ZP_07675221.1| exonuclease [Ralstonia sp. 5_7_47FAA]
 gi|308920747|gb|EFP66396.1| exonuclease [Ralstonia sp. 5_7_47FAA]
          Length = 239

 Score = 41.4 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 72  DKPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR-IIDTL 127
           + P        + ++         ++A  A FD  F+   + R   + P   +   I TL
Sbjct: 114 EAP--EVALPRYVEWVESLPGKPVFVAFPAGFDFTFMFWYMMRFAGRSPFGWAALDIKTL 171

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           + A    P  RN   +  + +   + H   H AL D+     ++  M+ 
Sbjct: 172 AFALTGMPYRRNVKAAFPEHWHDPLPH--THIALDDAKEQGALFCNMLA 218


>gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815]
 gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815]
          Length = 915

 Score = 41.4 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 46/143 (32%), Gaps = 33/143 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETT LD    +I+ I                  +     K +   +  HG       
Sbjct: 342 FDTETTSLDPMVAQIVGIS-----------------IAVEAGKAAYIPVAHHG------P 378

Query: 72  DKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           D P       + ++   +   ++ + +  + K+D   +       N          DTL 
Sbjct: 379 DAPVQLPRDEVLAKLKPWLESRDKKKVGQHLKYDEQVL------ANYGITMDGIEHDTLL 432

Query: 129 IARRKHPSSRNDLNSLC-KRYGI 150
            +        +D+++L  +  G+
Sbjct: 433 QSYVLESHRPHDMDNLALRHLGL 455


>gi|299472694|emb|CBN79865.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 722

 Score = 41.4 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 56/189 (29%), Gaps = 36/189 (19%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFD 102
               + P          +  GIT + L++  +    + +        ++   + H+ + D
Sbjct: 406 LDELVKPENHIVD-YVTRYSGITPQLLENVDTRLRQVQAAVLRVVGVRD-VLVGHSLEND 463

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY------GITISHRS 156
           +  +     R           +DT  +        R+ L  L   Y      G    H S
Sbjct: 464 LKALKMVHLRC----------LDTSLLYPHPKKGRRSSLRYLVSMYLQRTIQGSDKGHNS 513

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK-PLFTR 215
              A+  +  L+ +               K +    F  E+ T      L+R+  P    
Sbjct: 514 AEDAVA-ALELAQL---------------KVSRGPNFGAERSTDSIFDRLQRNHVPATMV 557

Query: 216 ITKEELDEH 224
            + E+   H
Sbjct: 558 ASSEQCRRH 566


>gi|47223800|emb|CAF98570.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 248

 Score = 41.4 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEAL---KL 62
           R +  D+E TGLD + D+IIE+   +   D +       + +          +    + 
Sbjct: 4  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIINQPDELLDGMSEWCKEH 63

Query: 63 H---GITDEFLKDKPSFSSIFSEFWDFFNEQ 90
          H   G+T      K +      EF  F  + 
Sbjct: 64 HGKSGLTQAVRNSKITLEQAEYEFLSFVRQH 94


>gi|259906706|ref|YP_002647062.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|224962328|emb|CAX53783.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|283476488|emb|CAY72303.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163]
          Length = 929

 Score = 41.4 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 85/251 (33%), Gaps = 67/251 (26%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ET  LD+ +  II               +F     P      P A   H   D   
Sbjct: 353 AFDLETDSLDTLSANII-------------GLSFAT--APGEAAYLPVA---HDYLDA-- 392

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++   S + +       +  A+ +  N KFD G +         D        DT+  +
Sbjct: 393 PEQLDRSDVLARLKPLLEDPQAQKVGQNLKFDRGVLKR------YDIELQGIRFDTMLES 446

Query: 131 RRKHP-SSRNDLNSLCKRY----------------------GITISHRSKHGALLDSHLL 167
              +  + R+D+++L  R+                       I +   + H A  D+ + 
Sbjct: 447 YALNSVAGRHDMDTLASRWLNHKTVTFEEIAGKGKNQLTFNQIALEQ-AAHYAAEDADVT 505

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF-------------T 214
             +++KM           +  ++ F + E   VP IS ++R+  L              +
Sbjct: 506 LQLHVKM----WPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDPGILATHSQELGS 561

Query: 215 RITKEELDEHD 225
           R+ + EL  H+
Sbjct: 562 RLAELELKAHE 572


>gi|70734062|ref|YP_257702.1| oligoribonuclease [Pseudomonas fluorescens Pf-5]
 gi|85542915|sp|Q4KJ81|ORN_PSEF5 RecName: Full=Oligoribonuclease
 gi|68348361|gb|AAY95967.1| oligoribonuclease [Pseudomonas fluorescens Pf-5]
          Length = 180

 Score = 41.4 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 57/179 (31%), Gaps = 35/179 (19%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-------LCPNGRK- 54
            +N    I  D+E TGL+   D IIE+  +       T+             +  +    
Sbjct: 1   MQNPQNLIWIDLEMTGLNPDTDVIIEMATI------VTDSNLNTLAEGPVIAIHQSDEIL 54

Query: 55  --NSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGF 105
                   + H   G+T    + + S +   ++   F  +      +    ++   D  F
Sbjct: 55  AGMDEWNTRQHGGSGLTQRVRESRISMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   ++ +       +  + TL  +A R  P  R+                S H AL D
Sbjct: 115 LYRHMKALESYFHYRNLDVSTLKELAARWAPDVRDS-----------FKKGSTHLALDD 162


>gi|308500728|ref|XP_003112549.1| hypothetical protein CRE_30972 [Caenorhabditis remanei]
 gi|308267117|gb|EFP11070.1| hypothetical protein CRE_30972 [Caenorhabditis remanei]
          Length = 193

 Score = 41.4 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 32/174 (18%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-------SPE 58
           + R I  D E TGL+ +   + EI  +       T  T    +    ++          +
Sbjct: 12  EQRIIWIDCEMTGLNVEKQTLCEIAVIVTDSELNTIATGPDIVIHQPKEVLDNMEDWPRK 71

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAELQRIN 114
               +G+ D+ +  K S +   +E  +F         +    ++   D  FI   + ++ 
Sbjct: 72  TFLENGLMDKIISSKYSMTEAENEVVEFLKLHALPGKSPIAGNSIYMDRLFIKKYMPKL- 130

Query: 115 KDPLDPSRIIDTLSIA---RRKHPSSRNDLNSLCKRYGITISHRSK--HGALLD 163
            D     R ID  +I    +R +P  ++               R    H A  D
Sbjct: 131 -DEFAHYRCIDVSTIKGLVQRWYPDFKH--------------PRKACTHRAFDD 169


>gi|307249707|ref|ZP_07531687.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858273|gb|EFM90349.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 686

 Score = 41.4 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 20/155 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLCPNGRK 54
           + N+++ +  D ET  LDS +  ++ I             L + +     QV L P    
Sbjct: 351 KINQVKLVAVDTETDNLDSMSANLVGISFGLANGEACYIPLTHKE-----QVTLEPQQSD 405

Query: 55  NSPEALKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
              E  ++    + E  K++ + ++   E        + + I  N K+D+        ++
Sbjct: 406 LFAEPAEVETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANHGVQV 465

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                      DT+  +   + + R++++ L  RY
Sbjct: 466 EGVAF------DTMLESYTLNSTGRHNMDELADRY 494


>gi|254474520|ref|ZP_05087906.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
 gi|214028763|gb|EEB69598.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
          Length = 949

 Score = 41.4 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 15/149 (10%)

Query: 5   NKMRK---IVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           N++R+   +  D ETTGLD     ++ I  AVE                P   K    + 
Sbjct: 348 NQIRERGWVAVDTETTGLDEMKADLVGISLAVEPGAACYI---------PLAHKAEAGSD 398

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            L G +D   + +  F++  S       +     I  N K+D      +     +D +  
Sbjct: 399 DLFG-SDTLAEGQMDFATALSMLKPVLEDPAILKIGQNMKYDAKIFRRQHGAGFEDGITV 457

Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRY 148
           +   DT+ ++         + +++L +RY
Sbjct: 458 APYDDTMLLSYALFAGQHGHGMDTLSERY 486


>gi|237809227|ref|YP_002893667.1| Exonuclease RNase T and DNA polymerase III [Tolumonas auensis DSM
           9187]
 gi|237501488|gb|ACQ94081.1| Exonuclease RNase T and DNA polymerase III [Tolumonas auensis DSM
           9187]
          Length = 181

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 25/175 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD------YSKTNRTFQVFLCPNGRKN 55
           + +N+   I  D+E TGL+ + DRI+EI  +                  Q          
Sbjct: 1   MSQNEQNLIWLDMEMTGLEPETDRILEIAMIVTDKELNVLAEGPVLAIHQS--DDVLAGM 58

Query: 56  SPEALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
                + HG       +      +  + ++  +   ++  E  +    ++   D  F+  
Sbjct: 59  DEWNTRTHGESGLVDRVRASECDEAKAVATCLTFIREWVPEGKSPMCGNSIGQDRRFMVR 118

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  + K     +  + T+     +      D            +    H AL D
Sbjct: 119 YMPELEKYFHYRNIDVSTIKELVSRWKPEIMD----------EFTKTGTHQALDD 163


>gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 925

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 58/173 (33%), Gaps = 45/173 (26%)

Query: 9   KIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           ++ FD ETTGLD     ++ +             + +        + L P+     P+ L
Sbjct: 335 QVAFDTETTGLDPLRAELVGVSLATAPGRACYIPIKHDAGPAQGSLLLDPSPAAAGPDIL 394

Query: 61  --KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             ++                  ++      + +   I HN K+D+  +           L
Sbjct: 395 GREVT----------------LAKLAPLLADASVLKIGHNIKYDMQVMAQA-------GL 431

Query: 119 DPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             +   DT+ ++     +S  + ++ L K   + + H        D+   +DV
Sbjct: 432 TVTAFDDTMLLSYVLDGASHGHGMDELAK---LHLDH--------DTIKFADV 473


>gi|319941454|ref|ZP_08015782.1| exonuclease RNase T and DNA polymerase III [Sutterella
           wadsworthensis 3_1_45B]
 gi|319805074|gb|EFW01904.1| exonuclease RNase T and DNA polymerase III [Sutterella
           wadsworthensis 3_1_45B]
          Length = 194

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 31/168 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA---------LKL 62
            D+E TGL  + +R++E+ A+                 P    + P+A          + 
Sbjct: 24  IDMEMTGLQPEVNRVLEVAAIITDKNLNILHE-----GPVVAIHQPKAVLDGMDAWNTET 78

Query: 63  H---GITDEFLK---DKPSFSSIFSE-FWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           H   G+    L+   D+   + IF+E F  +  E  +    +    D  F+   +  + +
Sbjct: 79  HTKSGLVARCLESTVDEEKCAQIFTEVFRRYVPEGKSPMCGNTIGQDRRFMARWIPGMER 138

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                S  + T+    R+    +  + +            +KH AL D
Sbjct: 139 YFHYRSIDVSTIKELCRRWAPEKVWVGTCV----------NKHQALAD 176


>gi|314985436|gb|EFT29528.1| hypothetical protein HMPREF9594_00564 [Propionibacterium acnes
          HL005PA1]
 gi|328759611|gb|EGF73213.1| hypothetical protein HMPREF9343_02650 [Propionibacterium acnes
          HL099PA1]
          Length = 192

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
          ++ D ETT LD    RIIEI  ++    +         + P      P A 
Sbjct: 12 VILDTETTDLD---GRIIEISIIDAATGTVL---MDQLINPTLLDIPPGAE 56


>gi|291412547|ref|XP_002722544.1| PREDICTED: DNA-directed DNA polymerase epsilon [Oryctolagus
           cuniculus]
          Length = 2411

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 68/215 (31%), Gaps = 61/215 (28%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT--------FQVFLCPNGRKN 55
           + FDIETT L     D++ D+I+ I   ++   Y  TNR         F+    P     
Sbjct: 395 LAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEF--TPKQEYE 452

Query: 56  SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRI 113
            P            + ++P    +   +++   E +    + +N   FD  F+ A     
Sbjct: 453 GPFC----------VFNEPDEVHLIQRWFEHVQETKPTIMVTYNGDFFDWPFVEARAAVH 502

Query: 114 NKDPL---------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITI 152
                                    +D L   +R    P   ++L +  K + G   + +
Sbjct: 503 GLSMYQEIGFQKDSQGEYKAPQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVEL 562

Query: 153 SHRSKHG------------ALLDSHLLSDVYIKMM 175
                              ++ D+     +Y+K +
Sbjct: 563 DPEDMCRMATEQPQTLATYSVSDAVATYYLYMKYV 597


>gi|302406907|ref|XP_003001289.1| RNA exonuclease [Verticillium albo-atrum VaMs.102]
 gi|261359796|gb|EEY22224.1| RNA exonuclease [Verticillium albo-atrum VaMs.102]
          Length = 309

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 44/135 (32%), Gaps = 11/135 (8%)

Query: 40  TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99
             ++   F+ P  +        + GI    ++    F  + +E  +    Q+   I H+ 
Sbjct: 153 VGKSTTAFVRPREKVTDWR-TAVSGIAPRKMRLAREFEDVQAEVAELL--QDRILIGHDV 209

Query: 100 KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLC-KRYGITISHRSKH 158
           K D+  +       +                R+     +  L  L  +   + I  +  H
Sbjct: 210 KHDLDALQLTHSIKDIRDTSKFPGF------RQYGNGKKPALRKLAGEILKVEI-QQGAH 262

Query: 159 GALLDSHLLSDVYIK 173
            ++ D+ +   ++ +
Sbjct: 263 SSVEDAKVTMALFRR 277


>gi|258515120|ref|YP_003191342.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778825|gb|ACV62719.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
          Length = 755

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 28/142 (19%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +I  D ETTGLD  ND I+ +              + V++ P   K + + L        
Sbjct: 139 EIAVDTETTGLDVYNDVIVGLSFTLPKAD------YHVYI-PVAHKVAGQQL-------- 183

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                 S  ++ +       + N   I HN+K+D+  +     R+           DT+ 
Sbjct: 184 ------SRRAVLTALKPILTDVNIGKILHNSKYDIHMLIRHGLRL------RGIKHDTMI 231

Query: 129 IARRKHPSSRN-DLNSLCKRYG 149
                + +     L +L  +YG
Sbjct: 232 AMAVLNENEPTLALKNLATKYG 253


>gi|154509219|ref|ZP_02044861.1| hypothetical protein ACTODO_01740 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798853|gb|EDN81273.1| hypothetical protein ACTODO_01740 [Actinomyces odontolyticus ATCC
           17982]
          Length = 198

 Score = 41.0 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 56/164 (34%), Gaps = 31/164 (18%)

Query: 17  TGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR---KNSPEALKLH---GITDEF 69
           TGLD + D +IE+  V    D +  +    V + P        +     +H   G+ D+ 
Sbjct: 2   TGLDVQRDALIEVAVVVTDGDLTIVDPGMDVLITPPAEALDNMNDFVRNMHTSSGLLDDL 61

Query: 70  ----LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRII 124
               +  + +   + S    F  +Q    +A N+   D  F+ A +            +I
Sbjct: 62  QTSGVSMEEATEQVLSYIKRFVPQQGKALLAGNSVGTDKMFLEANM----------PSVI 111

Query: 125 DTLSIARRKHPSSRNDLNSLCKR-YGITI----SHRSKHGALLD 163
           D L        S +     L KR Y +           H AL D
Sbjct: 112 DHLHYRLVDVSSIK----ELAKRWYRVAFAESPDKHGGHRALAD 151


>gi|289620483|emb|CBI52844.1| unnamed protein product [Sordaria macrospora]
          Length = 180

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 36/117 (30%), Gaps = 27/117 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG------------RKNSPEA 59
            D E TGL+   D IIEI  +       T+      L P G                   
Sbjct: 23  IDCEMTGLNPDQDAIIEIYCL------ITDEQLN-LLDPTGWGAVIHQTKARMDAMDEWC 75

Query: 60  LKLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINA 108
            ++H   G+T   L    +      E   +      N++ A    ++   D  F+  
Sbjct: 76  TRVHGDSGLTAAVLASTVTPEQAADELLAYIQKYVPNKRIALLAGNSVHADRAFLRK 132


>gi|187930532|ref|YP_001901019.1| hypothetical protein Rpic_3467 [Ralstonia pickettii 12J]
 gi|187727422|gb|ACD28587.1| conserved hypothetical protein [Ralstonia pickettii 12J]
          Length = 243

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 58/183 (31%), Gaps = 23/183 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ----VFLCPNGRKNS-------P 57
            +  DIE  G       ++   +   L       TF+          G           P
Sbjct: 48  YVSTDIEADGPIPGPHSMLSFASAAYLADKTLVGTFEANLETLPGAEGHPIQMQWWKTQP 107

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRI-N 114
           EA      T+    + P        + ++         ++A  A FD  ++   + R   
Sbjct: 108 EAWAACR-TN---LEAP--EVALPRYVEWIESLPGKPVFVAFPAGFDFTYMFWYMMRFAG 161

Query: 115 KDPLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + P   +   I TL+ A    P  RN   +  + +   + H   H AL D+     ++  
Sbjct: 162 RSPFGWAALDIKTLAFALTGMPYRRNVKAAFPEHWHDPLPH--THIALDDAKEQGALFCN 219

Query: 174 MMV 176
           M+ 
Sbjct: 220 MLA 222


>gi|119492017|ref|XP_001263503.1| DNA polymerase epsilon, catalytic subunit A/POL2, putative
           [Neosartorya fischeri NRRL 181]
 gi|119411663|gb|EAW21606.1| DNA polymerase epsilon, catalytic subunit A/POL2, putative
           [Neosartorya fischeri NRRL 181]
          Length = 2230

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 14/117 (11%)

Query: 9   KIVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALK 61
            + FDIETT L     DS  D+I+ I   ++   +  TNR      +        PE   
Sbjct: 282 ILAFDIETTKLPLKFPDSVIDQIMMISYMIDGQGFLITNREIVSEDINDFEYTPKPEYSG 341

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAK-FDVGFINAELQRINKD 116
                   + ++P+  S+   F++   E     IA +N   FD  F+ A    +  D
Sbjct: 342 -----PFMIFNEPNERSVIERFFEHIKEAKPTVIATYNGDFFDWPFVEARASVLGID 393


>gi|330807223|ref|YP_004351685.1| Oligoribonuclease [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327375331|gb|AEA66681.1| Oligoribonuclease [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 180

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 23/173 (13%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----SPE 58
            +N    I  D+E TGL+   D IIE+  +       T     V    +  +        
Sbjct: 1   MQNPQNLIWIDLEMTGLNPDTDVIIEMATIVTDSDLNTLAEGPVIAIHHSDEILAGMDEW 60

Query: 59  ALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQ 111
             + H   G+T    + K S +   ++   F  +      +    ++   D  F+   ++
Sbjct: 61  NTRQHGGSGLTQRVRESKISMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYTHMK 120

Query: 112 RINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +       +  + TL  +A R  P  R+                  H AL D
Sbjct: 121 SLESYFHYRNLDVSTLKELAARWAPQVRDS-----------FQKGGSHLALDD 162


>gi|241664718|ref|YP_002983078.1| hypothetical protein Rpic12D_3139 [Ralstonia pickettii 12D]
 gi|240866745|gb|ACS64406.1| conserved hypothetical protein [Ralstonia pickettii 12D]
          Length = 239

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 72  DKPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR-IIDTL 127
           + P        + ++         ++A  A FD  F+   + R   + P   +   I TL
Sbjct: 114 EAP--EVALPRYVEWVESLPGKPVFVAFPAGFDFTFMFWYMMRFAGRSPFGWAALDIKTL 171

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           + A    P  RN   +  + +   + H   H AL D+     ++  M+ 
Sbjct: 172 AFALTGMPYRRNVKAAFPEHWHDPLPH--THIALDDAKEQGALFCNMLA 218


>gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
 gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
          Length = 953

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG +     ++ +   +  +       + V + PN      EALK          
Sbjct: 385 IDTETTGTEPMEAELVGMSFSDAENKG-----YYVPVPPNR----EEALK---------- 425

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                  I +E    +  + +  +  N K+D+  +     ++           DT+    
Sbjct: 426 -------IINELRPLYENEKSLKVGQNIKYDMIVLQNYGVQVRGALF------DTMLAHY 472

Query: 132 RKHPSSRNDLNSLCKRY 148
              P  R++++ L + Y
Sbjct: 473 VLQPELRHNMDYLAEIY 489


>gi|326773762|ref|ZP_08233045.1| oligoribonuclease [Actinomyces viscosus C505]
 gi|326636992|gb|EGE37895.1| oligoribonuclease [Actinomyces viscosus C505]
          Length = 210

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 60/180 (33%), Gaps = 34/180 (18%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-- 57
           M   + +  +  D E TGLD   D +IE+  V    +         V + P         
Sbjct: 8   MTTSDPL--VWIDCEMTGLDQSADALIEVAVVVTDYELKPLAEGIDVLIKPPAAALEQMD 65

Query: 58  -EALKLH---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINA 108
                +H   G+    L+D  +  +  S   D+        + A+   ++   D  F+  
Sbjct: 66  DYVRTMHTSSGLL-AALEDGVTMETARSTVLDYVTSLVPEPRTAQLAGNSVGTDKAFLAR 124

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR-YGITISHRSK----HGALLD 163
           ++  +        RI+D             + L  L KR Y  T  H  K    H AL D
Sbjct: 125 DMPEL--IEHLHYRIVDV------------SSLKELAKRWYPRTFFHAPKKAGGHRALAD 170


>gi|332527623|ref|ZP_08403670.1| hypothetical protein RBXJA2T_16812 [Rubrivivax benzoatilyticus JA2]
 gi|332112026|gb|EGJ12003.1| hypothetical protein RBXJA2T_16812 [Rubrivivax benzoatilyticus JA2]
          Length = 174

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 55/169 (32%), Gaps = 31/169 (18%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGIT 66
             V D+E +G   +    IE+G V     ++        + P          A  +HGI 
Sbjct: 14  PCVLDVEASGF-GRASYPIEVGYVLPDGRARC-----TLIRPAAGWTHWDERAAGVHGIA 67

Query: 67  DEFLK--DKPSFSSIFSEF-WDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            E L+   +P+ + + +    D        +  AH    D  ++ A  +     P     
Sbjct: 68  RETLERCGRPA-AEVAAMLNVDLAGRTVYCDGWAH----DYAWLGALFEEAGVPPSFRLE 122

Query: 123 IIDTLSIARRKHPSSRNDLNSLCK----RYGITISHRSKHGALLDSHLL 167
            +     AR    ++   L    +      G+      +H A  D+  L
Sbjct: 123 TV-----ARLLDEATLARLGDTRRGVVGELGL-----QRHRASSDARAL 161


>gi|315125481|ref|YP_004067484.1| oligoribonuclease [Pseudoalteromonas sp. SM9913]
 gi|315013994|gb|ADT67332.1| oligoribonuclease [Pseudoalteromonas sp. SM9913]
          Length = 181

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 60/188 (31%), Gaps = 51/188 (27%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  NK   I  D+E TGL+ + D+I+EI  V                           + 
Sbjct: 1   MTINKSNLIWLDLEMTGLEPETDKILEIATVVTDADLNILAE-------------GPTIA 47

Query: 62  LHGITDEFLKD-------------------KPSFSS--IFSEFWDFFNEQN----AEWIA 96
           +H  +DE L                       +F       +   F  +      +    
Sbjct: 48  IHQ-SDELLDGMDEWCTTQHGKSGLTARCKASTFDEAYAVEQTLAFLKQWVPAGASPMCG 106

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHR 155
           ++   D  F+N  ++ +       +  + T+  +ARR  P      + L +     ++ +
Sbjct: 107 NSIGQDRRFMNKYMRELEDFFHYRNLDVSTIKELARRWKP------DVLAQ-----VNKK 155

Query: 156 SKHGALLD 163
             H AL D
Sbjct: 156 GSHLALDD 163


>gi|296100932|ref|YP_003611078.1| oligoribonuclease [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055391|gb|ADF60129.1| oligoribonuclease [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 181

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 25/175 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFL-CPNGRKNSP 57
           +  ++   I  D+E TGLD + DRIIEI  +             T  V            
Sbjct: 1   MSADENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDDQLALMDE 60

Query: 58  EALKLH---GITDEFLKD---KPSFSSIFS-EFWD-FFNEQNAEWIAHNAKFDVGFINAE 109
             ++ H   G+  E +K        + + + EF   +     +    ++   D  F+   
Sbjct: 61  WNVRTHTGSGLV-ERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKY 119

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  +          + TL  +ARR  P     L+            +  H A+ D
Sbjct: 120 MPELESYFHYRYLDVSTLKELARRWKPEI---LD--------GFKKQGTHQAMDD 163


>gi|217974867|ref|YP_002359618.1| oligoribonuclease [Shewanella baltica OS223]
 gi|217500002|gb|ACK48195.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS223]
          Length = 181

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 53/166 (31%), Gaps = 27/166 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLH-- 63
            D+E TGL+   DRIIEI  +        +         Q               K H  
Sbjct: 11  IDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQS--DDVLAAMDDWNQKHHGE 68

Query: 64  -GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRINKDPL 118
            G+ D     + + +   ++   F  +      +    ++   D  F+N  ++ +     
Sbjct: 69  SGLIDRVRASQETEAQAVAKTIAFLEQYVPKGASPMCGNSIGQDRRFLNRYMRELEDYFH 128

Query: 119 DPSRIIDTLSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  + T+    ++  P +            +    ++ H AL D
Sbjct: 129 YRNVDVSTIKELVKRWSPETM-----------VGFKKQNTHQALQD 163


>gi|187927908|ref|YP_001898395.1| oligoribonuclease [Ralstonia pickettii 12J]
 gi|187724798|gb|ACD25963.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
           12J]
          Length = 219

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 27/174 (15%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK----NSPEA 59
           K+    +  D+E TGL  +NDRIIE+  V             V +     +         
Sbjct: 25  KSDNNLVWLDMEMTGLSPENDRIIEVAVVVTDSELNILAEGPVLVIHQSDELLDGMDAWN 84

Query: 60  LKLHGITDEFLKDKPSFSSIFSE---------FWDFFNEQNAEWIAHNAKFDVGFINAEL 110
              HG     L DK   S+                +  +  +    ++   D  F+   +
Sbjct: 85  KGTHG--RSGLIDKVKASTTTEAEAEAELLAFLKKWVPKSKSPMCGNSICQDRRFMARYM 142

Query: 111 QRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            ++       +  + TL  + +R  P       ++ K      +   +H A  D
Sbjct: 143 PKLEAYFHYRNLDVSTLKELCKRWQP-------AIAK----GFTKHQRHTAFAD 185


>gi|114661383|ref|XP_001158166.1| PREDICTED: putative RNA exonuclease NEF-sp-like isoform 2 [Pan
           troglodytes]
 gi|114661385|ref|XP_510867.2| PREDICTED: exonuclease NEF-sp isoform 6 [Pan troglodytes]
 gi|114661387|ref|XP_001158323.1| PREDICTED: exonuclease NEF-sp isoform 5 [Pan troglodytes]
 gi|114661389|ref|XP_001158271.1| PREDICTED: putative RNA exonuclease NEF-sp-like isoform 4 [Pan
           troglodytes]
 gi|114661391|ref|XP_001158108.1| PREDICTED: exonuclease NEF-sp isoform 1 [Pan troglodytes]
          Length = 774

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 52/171 (30%), Gaps = 29/171 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E   L SK   +  I  V        +      + P  +          GIT + L 
Sbjct: 231 LDCEMC-LTSKGRELTRISLVAEGGCCVMDE----LVKPENKILDYL-TSFSGITKKIL- 283

Query: 72  DKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             P       +  +        +A  + H+   D+  +                +IDT S
Sbjct: 284 -NPVTTKLKDVQRQLKALL-PPDAVLVGHSLDLDLRALKMI----------HPYVIDT-S 330

Query: 129 IARRKHPSSRNDLNSLCKR-YG--ITISHRSKHGALLDSHL---LSDVYIK 173
           +   +    R  L  L K   G  I    R  H A  D+     L++ ++K
Sbjct: 331 LLYVREQGRRFKLKFLAKVILGKDIQCPDRLGHDATEDARTILELAEYFLK 381


>gi|114661393|ref|XP_001158225.1| PREDICTED: putative RNA exonuclease NEF-sp-like isoform 3 [Pan
           troglodytes]
          Length = 743

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 52/171 (30%), Gaps = 29/171 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E   L SK   +  I  V        +      + P  +          GIT + L 
Sbjct: 231 LDCEMC-LTSKGRELTRISLVAEGGCCVMDE----LVKPENKILDYL-TSFSGITKKIL- 283

Query: 72  DKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             P       +  +        +A  + H+   D+  +                +IDT S
Sbjct: 284 -NPVTTKLKDVQRQLKALL-PPDAVLVGHSLDLDLRALKMI----------HPYVIDT-S 330

Query: 129 IARRKHPSSRNDLNSLCKR-YG--ITISHRSKHGALLDSHL---LSDVYIK 173
           +   +    R  L  L K   G  I    R  H A  D+     L++ ++K
Sbjct: 331 LLYVREQGRRFKLKFLAKVILGKDIQCPDRLGHDATEDARTILELAEYFLK 381


>gi|329123183|ref|ZP_08251752.1| oligoribonuclease [Haemophilus aegyptius ATCC 11116]
 gi|327471528|gb|EGF16972.1| oligoribonuclease [Haemophilus aegyptius ATCC 11116]
          Length = 182

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 58/177 (32%), Gaps = 29/177 (16%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT---------NRTFQVF--LCP 50
           +  +K   I  D+E TGL+ + +RIIEI  +                 +++ ++   +  
Sbjct: 1   MPFDKQNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMND 60

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
             +K   E   +  I    L ++ +          +  +  +    ++   D  F+   +
Sbjct: 61  WCQKTHSENGLIERIKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGALLD 163
             +        R +D             + L  L  R+   I       + H AL D
Sbjct: 121 PDL--ADYFHYRHLDV------------STLKELAARWKPEILEGFKKENTHLALDD 163


>gi|254526888|ref|ZP_05138940.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538312|gb|EEE40765.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str.
           MIT 9202]
          Length = 976

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 24/147 (16%)

Query: 3   RKNKMRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +K  +IV  D ET  L+  +  ++ IG     +         +F  P G +       
Sbjct: 375 RLDKTNQIVSLDTETNSLNPIDAELVGIGLCLGEEND------DLFYIPLGHQ------- 421

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
               T +   ++ S   +FS+  ++  +   E    N+KFD          +        
Sbjct: 422 ----TKKETPNQLSIEDVFSKLRNWIEDPRKEKALQNSKFDRQIFFNHGLDLKGVTF--- 474

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY 148
              DTL      +   ++ L+ +  R 
Sbjct: 475 ---DTLLADYLLNNQEKHGLSEISFRL 498


>gi|308198194|ref|XP_001387141.2| predicted protein [Scheffersomyces stipitis CBS 6054]
 gi|149389077|gb|EAZ63118.2| predicted protein [Pichia stipitis CBS 6054]
          Length = 369

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 63/169 (37%), Gaps = 22/169 (13%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D E  G  ++   ++ + AV+          F   + P G        +  G++ E 
Sbjct: 214 IGIDCEM-GYTTRGSELLRVTAVDFFSGKDVLDIF---VRPYGEVVDLN-TRYSGVS-EI 267

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT--L 127
             +  SF  + ++      ++N   + H  + D+  +           L  +RIIDT  L
Sbjct: 268 KPEAVSFHEMLNQ-LGHIMDKNTILVGHGLENDMNAMR----------LIHNRIIDTSIL 316

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIK 173
               +  P+ +  L  L  +Y   +    +H +  DS    D+   +IK
Sbjct: 317 YPKHKATPTFKFSLKDLAFQYLSRVIQTGEHDSSEDSLAAIDIVKYFIK 365


>gi|154302028|ref|XP_001551425.1| hypothetical protein BC1G_10251 [Botryotinia fuckeliana B05.10]
 gi|150855643|gb|EDN30835.1| hypothetical protein BC1G_10251 [Botryotinia fuckeliana B05.10]
          Length = 596

 Score = 41.0 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 6/88 (6%)

Query: 89  EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
           ++N   + H+   D+ F+      IN   L       TL     K   +   L+++    
Sbjct: 225 KRNIILVGHDVDADIRFLRQIGYEINNLKLHEG-CDTTLMWRALKREVNPRSLSAILAEI 283

Query: 149 GITISHRSKHGALLDSHLLSDVYIKMMV 176
           GIT  +   H A  D+         M+ 
Sbjct: 284 GITAWN--LHNAGNDAVYT---LQAMLG 306


>gi|315046680|ref|XP_003172715.1| RNA exonuclease 1 [Arthroderma gypseum CBS 118893]
 gi|311343101|gb|EFR02304.1| RNA exonuclease 1 [Arthroderma gypseum CBS 118893]
          Length = 735

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 64/197 (32%), Gaps = 24/197 (12%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D E    +     +  I  +        +     F+ P          +  G+T E L
Sbjct: 359 ALDCEMCITEGGKSELTRISLLSWDGERILDE----FVKPET-PIIDYLTRFSGVTKENL 413

Query: 71  KDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              P   +   I  +  +    + +  I H+   D+  +           L    I+DT 
Sbjct: 414 D--PVTTTLPDIQRKLLEILTPR-SILIGHSLNSDLNALK----------LTHPFIVDTA 460

Query: 128 SIARR-KHPSSRNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGSQINFG 184
           SI    + P  +  L  LC+RY G  I +    H  + D+  + D+  +    G      
Sbjct: 461 SIYPHPRGPPLKPSLKWLCQRYLGREIQNGMAGHDPVEDAKAVLDLVKQKCEKGESWGTN 520

Query: 185 FKTNEDRFFKEEKKTVP 201
             + E  F +  + + P
Sbjct: 521 EASTESIFQRLARASRP 537


>gi|330937562|gb|EGH41502.1| ribonuclease T [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 42

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 15/35 (42%)

Query: 148 YGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
            GI    R  H A  D+   ++++  ++    ++ 
Sbjct: 1   AGIDFDGREAHSARYDTEKTAELFCGIVNRWKEMG 35


>gi|330898572|gb|EGH29991.1| ribonuclease T [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 43

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 15/36 (41%)

Query: 147 RYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182
             GI    R  H A  D+   ++++  ++    ++ 
Sbjct: 1   AAGIDFDGREAHSARYDTEKTAELFCGIVNRWKEMG 36


>gi|17547986|ref|NP_521388.1| hypothetical protein RSc3269 [Ralstonia solanacearum GMI1000]
 gi|17430292|emb|CAD17057.1| hypothetical transmembrane protein [Ralstonia solanacearum GMI1000]
          Length = 226

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 58/183 (31%), Gaps = 23/183 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ----VFLCPNGRKNS-------P 57
            +  DIE  G       ++   +   L       TF+          G           P
Sbjct: 31  YVSTDIEADGPIPGPHSMLSFASAAYLADKTLVGTFEANLETLPGAEGHPIQMQWWAQQP 90

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRI-N 114
           EA           +D  +  +    + ++         ++A  A FD  F+   + R   
Sbjct: 91  EAWA------ACRRDLEAPEAALPRYVEWVESLPGKPVFVAFPAGFDFTFMFWYMMRFAG 144

Query: 115 KDPLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + P   +   I TL+ A    P  RN   +   ++   + H   H AL D+     ++  
Sbjct: 145 RSPFGWAALDIKTLAFALTGLPYRRNVKAAFPAQWHDPLPH--THIALDDAKEQGALFCN 202

Query: 174 MMV 176
           M+ 
Sbjct: 203 MLA 205


>gi|332881618|ref|ZP_08449266.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332680257|gb|EGJ53206.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 923

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 32/140 (22%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTG D  + +++ +      +        Q F  P  +               
Sbjct: 352 FLSLDTETTGTDPISAKLVGLSFSVEEN--------QAFYVPIPQDFEEA---------- 393

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                     I +EF   + ++    I  N K+D+  +      +  +        DT+ 
Sbjct: 394 --------QKIVNEFKSVYEDERILKIGQNIKYDLMVLQNYGITLKGEIF------DTMI 439

Query: 129 IARRKHPSSRNDLNSLCKRY 148
                 P  R+ ++ L + Y
Sbjct: 440 AHYLLQPELRHGMDYLAEVY 459


>gi|327440735|dbj|BAK17100.1| predicted exonuclease [Solibacillus silvestris StLB046]
          Length = 420

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 46/138 (33%), Gaps = 31/138 (22%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD ETTGL      I  +G +E  D   T                        +T  
Sbjct: 99  IVFFDTETTGLKGAGTHIFLLGFLEADDEGFT------------------------LTQY 134

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFIN--AELQRINKDPLDPSRIID 125
            L D PS +     F     ++N   +++N   FD   +     L +    PL   R ID
Sbjct: 135 VLAD-PS-NEAALLFESKLWQRNVTIVSYNGKSFDWPQLQVRWTLNQQFLPPLKSQRQID 192

Query: 126 TLSIARRKHPS--SRNDL 141
            L   +R      SR  L
Sbjct: 193 LLHSTKRLWKDDLSRMKL 210


>gi|315055025|ref|XP_003176887.1| QDE-2-interacting protein [Arthroderma gypseum CBS 118893]
 gi|311338733|gb|EFQ97935.1| QDE-2-interacting protein [Arthroderma gypseum CBS 118893]
          Length = 779

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 50/162 (30%), Gaps = 24/162 (14%)

Query: 88  NEQNAEWIAHNAKFD---------VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138
             +N   + H    D           F        + D           S +   +   +
Sbjct: 582 RPRNLILVGHGLSGDIKSLDKLGCWTFTPEIYAARDGDETKMLPCFHDASDSANLYRVLK 641

Query: 139 N-----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFF 193
                  L ++    GI   H   H A  D+    +  + + +  +Q +   ++  D   
Sbjct: 642 RDYQPTSLGAILTDLGIAPWH--LHNAGNDARYTLEAVVGIAIKTAQADATAESERDALR 699

Query: 194 KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT-IQTLGKN 234
             E     + ++L     +  R ++E+L  H +  ++ L K 
Sbjct: 700 AREAPEPTSPAVL-----ITPRSSEEDL--HFRREVERLSKK 734


>gi|194434740|ref|ZP_03066992.1| oligoribonuclease [Shigella dysenteriae 1012]
 gi|194417021|gb|EDX33138.1| oligoribonuclease [Shigella dysenteriae 1012]
 gi|320180678|gb|EFW55605.1| 3'-to-5' oligoribonuclease (orn) [Shigella boydii ATCC 9905]
 gi|332083629|gb|EGI88847.1| exonuclease family protein [Shigella dysenteriae 155-74]
          Length = 181

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 1   MSANENNLIWIDLEMTGLDPELDRIIEIA---------------TLVTDANLNILAEGPT 45

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +          +     +  
Sbjct: 46  IAVHQ-SDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELVTLEFLKQWVPAGKSPI 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 105 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 153

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 154 KQGTHQAMDD 163


>gi|56757727|gb|AAW27004.1| SJCHGC02520 protein [Schistosoma japonicum]
          Length = 228

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 15/144 (10%)

Query: 46  VFLCPNGRKNSPEALKLHGITDEFLKDKPSFSS-IFSEFWDFFNEQNAE--WIAHNA-KF 101
                  R  S  A K+ G+  + L  +  F S        F N  ++   ++AHN  +F
Sbjct: 23  TLCFNPTRTISSIASKISGLNSDNLFHQKDFDSSAVDLIQLFLNRLDSPVCFVAHNGLRF 82

Query: 102 DVGFINAELQRI-NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI-------- 152
           D   + A++  +   D         T  + R     S   L++   ++   +        
Sbjct: 83  DFPLLRAQIMSVKGNDYKLNDSNECTNYMYRYSAFISPIKLSTTTNKHSFHLGDIHERVF 142

Query: 153 --SHRSKHGALLDSHLLSDVYIKM 174
              H   H A  D   +  +   +
Sbjct: 143 GEKHIHAHTAEGDCRAMLRLIQYL 166


>gi|269964116|ref|ZP_06178417.1| oligoribonuclease [Vibrio harveyi 1DA3]
 gi|269831150|gb|EEZ85308.1| oligoribonuclease [Vibrio harveyi 1DA3]
          Length = 181

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 54/173 (31%), Gaps = 21/173 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNG--RKNSP 57
           +  +    I  D+E TGLD +  +IIEI ++             V     P     K   
Sbjct: 1   MSFSDQNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELAKMDD 60

Query: 58  EALKLH---GIT----DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
                H   G+     +  + ++ + +        +  +  +    ++   D  F+   +
Sbjct: 61  WCTNTHTASGLVERVQNSQISEQDAVAQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKHM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             + +        + TL    R+       L+          S +  H AL D
Sbjct: 121 PELEEYFHYRYLDVSTLKELTRRWKPE--VLD--------GFSKQGTHLALDD 163


>gi|255321945|ref|ZP_05363095.1| DNA polymerase I [Campylobacter showae RM3277]
 gi|255301049|gb|EET80316.1| DNA polymerase I [Campylobacter showae RM3277]
          Length = 863

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 32/146 (21%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +    + FD ETT +D++N R++                F            P       
Sbjct: 298 DADTLVAFDTETTDVDTQNARLVG---------------FSFCFNDEEAYYVP------- 335

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ--NAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           ++ E+L   P       +F  +   Q      I  N K+D   +    + +  +P    +
Sbjct: 336 VSHEYL-GAP--KQASEKFAAWAISQIYKGCVIGQNLKYDFKVVK---RNLGLEPPVNFK 389

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
             DT+ +A    P S   +++L KR 
Sbjct: 390 --DTMILAWLMDPGSSVGMDALAKRL 413


>gi|149057241|gb|EDM08564.1| interferon stimulated exonuclease 20, isoform CRA_b [Rattus
           norvegicus]
 gi|149057243|gb|EDM08566.1| interferon stimulated exonuclease 20, isoform CRA_b [Rattus
           norvegicus]
          Length = 118

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 9/102 (8%)

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
              F+    E       +    + H+ K D   +  ++++     +  +     L    +
Sbjct: 4   ATPFAEARLEILQLL--KGKLVVGHDLKHDFSALKEDMRKY---TIYDTSTDMLLWHEAK 58

Query: 133 KHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVY 171
            H  SR  L  LCKR     I  + R  H ++ D+    ++Y
Sbjct: 59  LHCYSRVSLRLLCKRLLHKSIQNNWRG-HCSVEDARATMELY 99


>gi|254787466|ref|YP_003074895.1| oligoribonuclease [Teredinibacter turnerae T7901]
 gi|237686441|gb|ACR13705.1| oligoribonuclease [Teredinibacter turnerae T7901]
          Length = 182

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 31/168 (18%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA---------LKL 62
            D+E TGL  + D IIEI  V   ++            P    + P+A            
Sbjct: 11  VDLEMTGLVPERDFIIEIATVVTDEHLNILAE-----GPVMAIHQPDAVLDLMDEWCTNQ 65

Query: 63  HGIT-------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           HG +       D  +    +  +  +   ++     +    ++   D  F+   + ++  
Sbjct: 66  HGKSGLTQRVRDSDVTTANAEVATLAFLCEWVPAGKSPMCGNSIGQDRRFLQRFMPKLAD 125

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                +  + TL   +      R +L           + +  H AL D
Sbjct: 126 YFHYRNLDVSTL---KELVSRWRPELKD-------GFTKQGTHLALDD 163


>gi|154333079|ref|XP_001562800.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134059805|emb|CAM37231.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 928

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 31/180 (17%)

Query: 8   RKIVFDIETT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           R + FD E     G +S   R      V++L  S       + + P  R       +  G
Sbjct: 486 RVVAFDCEMVQIEGGESALARAT---LVDVLTGSVV---LDLLVKPRQRITDYR-TRFSG 538

Query: 65  ITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           I    L+    + +          + Q    + H+ + D               +    +
Sbjct: 539 IDAAMLEPVSTTLADCQQALQRLVDTQ-TFVVGHSLENDFKACKC---------IPNCYV 588

Query: 124 IDTLSIARRKHPSS-----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-IKMMVG 177
           +DT     R  P       +N L  L +RY      +  H +  D+ + +++  +K++ G
Sbjct: 589 LDTT----RLFPHPAGLPYKNALRFLAQRYLQRRIQQGPHNSATDAVVSAELTQLKLING 644


>gi|326916697|ref|XP_003204641.1| PREDICTED: interferon-stimulated 20 kDa exonuclease-like 2-like
           [Meleagris gallopavo]
          Length = 298

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 56/187 (29%), Gaps = 15/187 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   +        A   +   + +  +  ++ P        + +  GI  
Sbjct: 123 KFVAIDCEMVGTGPRGQ--TSALARCSIVSYEGDVLYDSYVRPTEPIVDYRS-RWSGICK 179

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +   F     E     +      + H    D   +     +              L
Sbjct: 180 KHMLNAVPFCKAQKEILKILS--GKVVVGHAVHNDFRALKYFHPKALIRDTSKIP----L 233

Query: 128 SIARRKHPSSRN-DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
              +   P +    L  L K      I +  ++ H ++ D+    ++Y K++    + + 
Sbjct: 234 LNRKGGFPENITVSLKHLTKELLHKDIQV-GKNGHCSVEDARSTMELY-KIVEAEWEQHL 291

Query: 184 GFKTNED 190
              + ++
Sbjct: 292 MLNSEQE 298


>gi|324120720|dbj|BAJ78751.1| DNA polymerase delta catalytic subunit [Euborellia plebeja]
          Length = 1078

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 26/141 (18%)

Query: 6   KMRKIVFDIETTGL-----DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             R + FDIE  G      + ++D +I+I +V      +                    L
Sbjct: 288 PFRILSFDIECAGRKGIFPEPEHDPVIQIASVVQEQGQR-------------APFIKNVL 334

Query: 61  KLHG---ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHN-AKFDVGFINAELQRI-- 113
            L+    I D  +    S S +  ++  F  + + + I  +N   FD+ ++    + +  
Sbjct: 335 TLNTCAPILDAQVFSFKSESELLDQWAKFVRQVDPDIITGYNINNFDMPYLLNRAKHLKV 394

Query: 114 -NKDPLDPSRIIDTLSIARRK 133
            N   L   + I ++  ++  
Sbjct: 395 KNFSYLSRIKNICSVVKSKML 415


>gi|148242768|ref|YP_001227925.1| DNA polymerase I [Synechococcus sp. RCC307]
 gi|147851078|emb|CAK28572.1| DNA polymerase I [Synechococcus sp. RCC307]
          Length = 986

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 26/139 (18%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETT L+    +++ +G                    +             I    
Sbjct: 396 VAIDTETTDLNPFRAQLVGLGFCWGEA------------DNDLAYIP--------IGHSG 435

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            + +   + +      +           NAK+D   +      +N         +DTL  
Sbjct: 436 AEGQLPLAEVLEALAPWLASPTQRKCLQNAKYDRLVLLRHGLELNGVA------VDTLLA 489

Query: 130 ARRKHPSSRNDLNSLCKRY 148
              +  S+R++L  L +R+
Sbjct: 490 DYLRDASARHNLEELAQRH 508


>gi|284921067|emb|CBG34132.1| putative phage exodeoxyribonuclease [Escherichia coli 042]
          Length = 823

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 45/195 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAV--------------ELLD----YSKTNR-TFQVFLCPNG 52
            D+ET G +  +  +I IGA+              + +D        +R T + +L  + 
Sbjct: 645 IDLETMGKNP-DAPLISIGAIFFDPQTGDMGPEFSKTIDMDTAGGVIDRGTIKWWLKQSR 703

Query: 53  RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINA 108
              S             L D+        +  +F +E + E+      + A FD   +  
Sbjct: 704 EAQSAI-----------LTDEIPLDDALLQLREFIDENSGEFFVQVWGNGANFDNTILRR 752

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
             +R       P R  +   +          D ++   R  I      +H AL D+   +
Sbjct: 753 SYERQGIP--CPWRYYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDARYQA 806

Query: 169 D----VYIKMMVGGS 179
                ++ K++   +
Sbjct: 807 KYVSVIWQKLIPNQA 821


>gi|260854329|ref|YP_003228220.1| putative exonuclease [Escherichia coli O26:H11 str. 11368]
 gi|257752978|dbj|BAI24480.1| putative exonuclease [Escherichia coli O26:H11 str. 11368]
          Length = 816

 Score = 41.0 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 45/195 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALK------- 61
            D+ET G +  +  II IGA+       +    F   +     G     + +K       
Sbjct: 638 IDLETMGKNP-DAPIISIGAIFFDPQTGEMGPEFSKTIDLETAGGVIDRDTIKWWLKQSR 696

Query: 62  ------LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINAELQ 111
                 L         D+        +  +F +E + E+      + A FD   +    +
Sbjct: 697 EAQSAILT--------DEIPLDDALLQLREFIDENSGEFFVQVWGNGATFDNVILRRSYE 748

Query: 112 RINKDPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168
           R            R + T+                   R  I      +H AL D+   +
Sbjct: 749 RQGIPCPWRYTNDRDVRTMVALGLVMDFD--------ARTTIPFEGE-RHNALNDARYQA 799

Query: 169 D----VYIKMMVGGS 179
                ++ K++   +
Sbjct: 800 KYVSAIWQKLLPSQA 814


>gi|308198223|ref|XP_001387159.2| 3'-5' exonuclease [Scheffersomyces stipitis CBS 6054]
 gi|149389092|gb|EAZ63136.2| 3'-5' exonuclease [Pichia stipitis CBS 6054]
          Length = 271

 Score = 41.0 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/172 (10%), Positives = 50/172 (29%), Gaps = 17/172 (9%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           +K   + +  D E  G+  +     +  +  V    ++  +     F+ P  +       
Sbjct: 98  KKEPGKYLSMDCEFVGVGPEGTESALARVSIVNFYGHTILDE----FVKPREKVTDWR-T 152

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            + G++ + +    +F        D    +    + H    D+  +     +        
Sbjct: 153 WVSGVSPKHMNVAITFEEAQKRTADLLKNR--ILVGHAIHHDLEALFLSHPKSLIRDTSR 210

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVY 171
            +        R         L  L   +  + I   + H ++ D+     ++
Sbjct: 211 HKPF------RAIASGKTPSLKKLTSHFLKLEI-QGAAHSSVEDARATMLLF 255


>gi|320352856|ref|YP_004194195.1| Exonuclease RNase T and DNA polymerase III [Desulfobulbus
           propionicus DSM 2032]
 gi|320121358|gb|ADW16904.1| Exonuclease RNase T and DNA polymerase III [Desulfobulbus
           propionicus DSM 2032]
          Length = 181

 Score = 41.0 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 17/146 (11%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-----NRTFQVFLCPNG--RKN 55
            K+    +  D+E TGL+   D+I+E+  V    + +               P       
Sbjct: 1   MKDNSNLVWIDLEMTGLNPFTDKILEVATVVTDSHLEILADGPVIAIHQ---PEEVLAAM 57

Query: 56  SPEALKLH---GITDEFLKD----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108
            P   + H   G+ D   +     + +          + +++ +    ++   D  F+  
Sbjct: 58  DPWNTQHHRESGLIDRVRRSTFTCRQAELETLEFIKQWVDKRVSPMCGNSVWHDRRFLAR 117

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKH 134
            +  + +     +  + TL     + 
Sbjct: 118 FMPELEQYFHYRNIDVSTLKELALRW 143


>gi|212633655|ref|YP_002310180.1| oligoribonuclease [Shewanella piezotolerans WP3]
 gi|212555139|gb|ACJ27593.1| Exonuclease [Shewanella piezotolerans WP3]
          Length = 181

 Score = 41.0 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 35/170 (20%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQV-----FLCPNGRKNSPEAL 60
            D+E TGL+   DRIIEI  +        +         Q       +    +K+  E+ 
Sbjct: 11  VDLEMTGLEPAVDRIIEIATIVTDKELNIIAQGPVIAIHQTDEQLALMDDWNQKHHGES- 69

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRINKD 116
              G+ +     + S     ++  +F ++      +    ++   D  F+N  +  +  +
Sbjct: 70  ---GLVERVKASQFSEEDAIAQTIEFLSQYVPAGASPMCGNSIGQDRRFLNRYMPAL--E 124

Query: 117 PLDPSRIIDTLSIA---RRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                R ID  ++    RR  PS+               + ++ H ALLD
Sbjct: 125 DFFHYRNIDVSTVKELVRRWEPSAMEG-----------FTKQNTHQALLD 163


>gi|71908614|ref|YP_286201.1| oligoribonuclease [Dechloromonas aromatica RCB]
 gi|71848235|gb|AAZ47731.1| Exonuclease [Dechloromonas aromatica RCB]
          Length = 184

 Score = 41.0 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 61/172 (35%), Gaps = 25/172 (14%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE----AL 60
           N    +  D+E TGL+   DRIIE+  V      +       ++     +          
Sbjct: 4   NANNLVWLDMEMTGLNPDGDRIIEMAMVVTNSELEMVAESPSWVVHQSDEILAGMDDWNQ 63

Query: 61  KLHGITDEFLKDKPSFSSI-----FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           K HG     L DK   S++      +E  +F  + +   + H+              I +
Sbjct: 64  KTHG--RSGLIDKVKASTMNEAAVEAEALEFLKKYS--LVGHSP--------MCGNSIGQ 111

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
           D    +R + TL           + L  LCKR+   +      +SKH A+ D
Sbjct: 112 DRRFMARYMPTLEAFFHYRNLDVSTLKELCKRWQPEVYKGFKKKSKHTAMAD 163


>gi|281366122|ref|NP_001163429.1| Pop2, isoform D [Drosophila melanogaster]
 gi|272455170|gb|ACZ94700.1| Pop2, isoform D [Drosophila melanogaster]
          Length = 357

 Score = 41.0 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 57/183 (31%), Gaps = 23/183 (12%)

Query: 25  RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT---DEFLKDKPSFSSIFS 81
           RII++G   + D  KT   +  +        S +      I    +  ++ K        
Sbjct: 82  RIIQLGLTFMDDDGKTPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGID 141

Query: 82  --EFWDFFNEQNAEWI------AHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA--- 130
             +F +         +        ++ +D G++   L   N  P D S   D L I    
Sbjct: 142 PIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPP-DESEFFDLLHIYFPN 200

Query: 131 ----RRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
               +    S +N    L  +  +  +      +H A  D+ L    + KM       +F
Sbjct: 201 IFDIKYLMKSCKNLKGGLQEVADQLELRRVG-PQHQAGSDALLTGMAFFKMREVQHTNDF 259

Query: 184 GFK 186
              
Sbjct: 260 HIT 262


>gi|293189781|ref|ZP_06608496.1| oligoribonuclease [Actinomyces odontolyticus F0309]
 gi|292821288|gb|EFF80232.1| oligoribonuclease [Actinomyces odontolyticus F0309]
          Length = 198

 Score = 41.0 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 31/164 (18%)

Query: 17  TGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGR---KNSPEALKLH---GITDEF 69
           TGLD + D +IE+  V    D +  +    V + P        +     +H   G+ D+ 
Sbjct: 2   TGLDVQRDALIEVAVVVTDGDLTIVDPGMDVLITPPAEALDNMNDFVRNMHTSSGLLDDL 61

Query: 70  ----LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRINKDPLDPSRII 124
               L  + +   + S    F  +Q    +A N+   D  F+ A +            +I
Sbjct: 62  QTSGLSMEEATEQVLSYIKRFVPQQGKALLAGNSVGTDKMFLEANM----------PSVI 111

Query: 125 DTLSIARRKHPSSRNDLNSLCKR-YGITI----SHRSKHGALLD 163
           D L        S +     L KR Y +           H AL D
Sbjct: 112 DHLHYRLVDVSSIK----ELAKRWYRVAFAESPDKHGGHRALAD 151


>gi|255693278|ref|ZP_05416953.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
 gi|260620957|gb|EEX43828.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
          Length = 930

 Score = 41.0 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 32/141 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ETTG +              +D      +F +          P   +      
Sbjct: 358 KILSLDTETTGTEP-------------MDAELVGMSFSIAENEAFYVPVPANQE------ 398

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LK       I +EF   F  +++  +  N K+D+  +      +           DT+
Sbjct: 399 ETLK-------IVNEFRPVFENESSLKVGQNIKYDMIVLQNYGVEVKGPLF------DTM 445

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P  R+ ++ L + Y
Sbjct: 446 IAHYVLQPELRHGMDYLAEIY 466


>gi|317032752|ref|XP_001394342.2| hypothetical protein ANI_1_1816094 [Aspergillus niger CBS 513.88]
          Length = 296

 Score = 41.0 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 15/170 (8%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--- 66
           +V D E    +     I  + AV+ +       +   ++ P  R  +    +  GIT   
Sbjct: 88  VVIDCEMVQAEKGRRVIAYLAAVDFITGEVLINS---YVDPQRRIFN-WCTRYSGITLKA 143

Query: 67  -DEFLKDKPSFSS---IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
             + + +  +           WDF  + +   I H+ K D+  +     RI    +  + 
Sbjct: 144 MKKAVANGDTLRGWMGARRALWDFI-DSDTVLIGHDIKHDLNCLGIIHPRIVDSTILTAE 202

Query: 123 IIDTLSIARRKHPSSRNDLNSL-CKRYGITISHR-SKHGALLDSHLLSDV 170
            +       ++   +   L +L C      I    + H AL D+    DV
Sbjct: 203 AVFRPRWETQRFRRTW-SLKTLSCVFLDRFIQGGSNGHSALEDAVATKDV 251


>gi|262405632|ref|ZP_06082182.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|294644423|ref|ZP_06722186.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
 gi|262356507|gb|EEZ05597.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|292640258|gb|EFF58513.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
          Length = 949

 Score = 41.0 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 32/141 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ETT  +  +  ++ +      +       F V + P+ R             D
Sbjct: 377 KILSLDTETTETEPMDAELVGMSFSIAEN-----EAFYVPV-PSDR-------------D 417

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LK       I  EF   F  +N+  +  N K+D+  +       N   +    + DT+
Sbjct: 418 EALK-------IVKEFRPVFENENSLKVGQNIKYDMIVLQ------NYGAVVKGPLFDTM 464

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P  R+ ++ L + Y
Sbjct: 465 IAHYVLQPELRHGMDYLAEIY 485


>gi|145487332|ref|XP_001429671.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124396765|emb|CAK62273.1| unnamed protein product [Paramecium tetraurelia]
          Length = 276

 Score = 41.0 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 72/190 (37%), Gaps = 19/190 (10%)

Query: 28  EIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-----ALKLHGITDEFLKDKPSFSSIFSE 82
           EIGA   +    T   +  ++  +              ++ GIT + +KDKP ++    +
Sbjct: 56  EIGASVQMLARITVVNYNGYVVLDQYYKPRFKVRNYITRISGITPQIIKDKPVYNDFEKQ 115

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN 142
                  ++   I H        + ++   +  D  + SR+ + +    +++      L 
Sbjct: 116 KLQLL-FKDKTIIGHT-------LKSDFDAMEFDLFNESRLFE-IRGGIKQYSQLNKGLK 166

Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK--TNEDRFFKEEKKTV 200
            +C +Y      + +H + +D+     ++ K     ++IN  +K    E    + +KK  
Sbjct: 167 KMCLKYLGQNIQQGQHSSEIDARATLFIFRKF---RNEINLHYKQLDLEQDKQRIQKKNS 223

Query: 201 PNISLLKRDK 210
              S  +R +
Sbjct: 224 QKNSKNQRKR 233


>gi|310831045|ref|YP_003969688.1| putative DNA polymerase III alpha subunit [Cafeteria roenbergensis
           virus BV-PW1]
 gi|309386229|gb|ADO67089.1| putative DNA polymerase III alpha subunit [Cafeteria roenbergensis
           virus BV-PW1]
          Length = 197

 Score = 41.0 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 14  IETTGL--DSKNDRIIE---------IGAVELLD---YSKTNRTF--QVFLCPNGRKNSP 57
           IET GL  D  +D II+         +  V         K N T      + P       
Sbjct: 10  IETDGLHLDKSHDMIIKKNLYKYAHLVKLVYHQGTYKNGKINTTLKKSFLIKPEHFIFPD 69

Query: 58  EALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           E  K++ +T + L+ K     ++ +EF           + HN  F +  I A L R   +
Sbjct: 70  ELTKINELTHQKLEKKGHDLEAVITEFITDLKSC-HVIVGHNIPFIMKTIIASLFRTGIN 128

Query: 117 -PLDPSRIIDTLSIARRKHPSSRNDLNSLC-KRYGITISHRSK 157
                 +IID ++     H   + +L  L  +  G +  ++S+
Sbjct: 129 HTFQKYKIIDIINFN---HQIDKPNLKHLALEILGNSYDNKSR 168


>gi|21228069|ref|NP_633991.1| hypothetical protein MM_1967 [Methanosarcina mazei Go1]
 gi|20906505|gb|AAM31663.1| hypothetical protein MM_1967 [Methanosarcina mazei Go1]
          Length = 249

 Score = 41.0 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 47/142 (33%), Gaps = 42/142 (29%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             FDIETTGL    D+I  +G     + ++       ++                     
Sbjct: 88  AFFDIETTGLSPCRDKITVVGIY---NGNEVK----TYVR-------------------- 120

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                +   +  EF  +        ++ N A+FD+ FI +E   I    L     ID + 
Sbjct: 121 ---GTNLEDLVEEFSRY-----RLLVSFNGARFDIPFIKSEFPEIEFKQLH----IDLMY 168

Query: 129 IARRKHPSSRNDLNSLCKRYGI 150
             RR        L  + K  GI
Sbjct: 169 PLRRIGYGG--GLKKIEKLLGI 188


>gi|260683450|ref|YP_003214735.1| putative exonuclease [Clostridium difficile CD196]
 gi|260687046|ref|YP_003218179.1| putative exonuclease [Clostridium difficile R20291]
 gi|260209613|emb|CBA63276.1| putative exonuclease [Clostridium difficile CD196]
 gi|260213062|emb|CBE04429.1| putative exonuclease [Clostridium difficile R20291]
          Length = 329

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 64/181 (35%), Gaps = 29/181 (16%)

Query: 7   MRK-IVFDIETTGLDSKND-----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M+  +  D E    +  +D            +I IG V + +   T   +   + P   K
Sbjct: 6   MKYKLFIDFE---FNILDDNKNKPKEYNGAELISIGGVLVDNEFNTIDNYYSLVKPKYNK 62

Query: 55  N-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQ- 111
             S +   L  +    + + P+   +  +F+ +F + +   I +N   FD+  +    + 
Sbjct: 63  ILSNKCKNLTKLNQLDINNAPNLLYVMDDFYKWFCKFDDVTI-YNWGDFDITGLLTSFRV 121

Query: 112 --------RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                    +    +D    I        +  S +  L ++ K +  ++    KH +L D
Sbjct: 122 YKYTGKCLELFNMMIDIQPFISQHITYNNRILSKQISLLNMKKIF--SVEGDIKHNSLSD 179

Query: 164 S 164
           +
Sbjct: 180 A 180


>gi|254975427|ref|ZP_05271899.1| putative exonuclease [Clostridium difficile QCD-66c26]
 gi|255092814|ref|ZP_05322292.1| putative exonuclease [Clostridium difficile CIP 107932]
 gi|255100928|ref|ZP_05329905.1| putative exonuclease [Clostridium difficile QCD-63q42]
 gi|255314556|ref|ZP_05356139.1| putative exonuclease [Clostridium difficile QCD-76w55]
 gi|255517231|ref|ZP_05384907.1| putative exonuclease [Clostridium difficile QCD-97b34]
 gi|255650337|ref|ZP_05397239.1| putative exonuclease [Clostridium difficile QCD-37x79]
          Length = 324

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 64/181 (35%), Gaps = 29/181 (16%)

Query: 7   MRK-IVFDIETTGLDSKND-----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M+  +  D E    +  +D            +I IG V + +   T   +   + P   K
Sbjct: 1   MKYKLFIDFE---FNILDDNKNKPKEYNGAELISIGGVLVDNEFNTIDNYYSLVKPKYNK 57

Query: 55  N-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQ- 111
             S +   L  +    + + P+   +  +F+ +F + +   I +N   FD+  +    + 
Sbjct: 58  ILSNKCKNLTKLNQLDINNAPNLLYVMDDFYKWFCKFDDVTI-YNWGDFDITGLLTSFRV 116

Query: 112 --------RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                    +    +D    I        +  S +  L ++ K +  ++    KH +L D
Sbjct: 117 YKYTGKCLELFNMMIDIQPFISQHITYNNRILSKQISLLNMKKIF--SVEGDIKHNSLSD 174

Query: 164 S 164
           +
Sbjct: 175 A 175


>gi|121604384|ref|YP_981713.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
 gi|120593353|gb|ABM36792.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
          Length = 941

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 40/149 (26%), Gaps = 30/149 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETT LD    +I+ +                  + P      P    L       
Sbjct: 367 VAVDTETTSLDEMRAQIVGV---------------SFSVTPGEAAYIP----LTH-DYPS 406

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
             ++     + +    +        +  N K+D           N          DT+  
Sbjct: 407 APEQLPLDEVLARLKPWLENPARPKLGQNIKYDRHVF------ANHGIEVQGYAHDTMLQ 460

Query: 130 ARRKHPSSRNDLNSLCKRY----GITISH 154
           +     +  + L SL +R+    GI    
Sbjct: 461 SYVLEVTKPHGLASLAERHVGRSGINYED 489


>gi|229587657|ref|YP_002869776.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
 gi|229359523|emb|CAY46364.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
          Length = 929

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 33/154 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + N  +   FD ETTG+D++  +++ +                  + P+     P     
Sbjct: 337 KLNDAKLFAFDTETTGIDAQQAQLVGV---------------SFAVQPHEAAYIP----- 376

Query: 63  HGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +T  ++   P      ++         +     +  +AKFD+  +      I  DP  
Sbjct: 377 --LTHAYI-GAPEQLDRDTVLLALKPLLEDPTKLKVGQHAKFDMNILANCA--IGGDPAH 431

Query: 120 ----PSRIIDTLSIARRKHPSS-RNDLNSLCKRY 148
                    DT+  +   + ++ R+D++SL K+Y
Sbjct: 432 GITVRGIAFDTMLESYVLNATATRHDMDSLAKKY 465


>gi|163256960|emb|CAO02764.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163256962|emb|CAO02765.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163256964|emb|CAO02766.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163256966|emb|CAO02767.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163256968|emb|CAO02768.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163256970|emb|CAO02769.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163256972|emb|CAO02770.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163256974|emb|CAO02771.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163256976|emb|CAO02772.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163256978|emb|CAO02773.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163256980|emb|CAO02774.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163256982|emb|CAO02775.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163256984|emb|CAO02776.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163256986|emb|CAO02777.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163256988|emb|CAO02778.1| putative exo-ribonuclease protein [Medicago truncatula var.
           longiaculeata]
 gi|163256990|emb|CAO02779.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163256992|emb|CAO02780.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163256996|emb|CAO02781.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163256998|emb|CAO02782.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163257000|emb|CAO02783.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163257002|emb|CAO02784.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163257004|emb|CAO02785.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163257006|emb|CAO02786.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163257008|emb|CAO02787.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163257010|emb|CAO02788.1| putative exo-ribonuclease protein [Medicago tornata]
 gi|163257012|emb|CAO02789.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163257014|emb|CAO02790.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163257016|emb|CAO02791.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163257018|emb|CAO02792.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163257020|emb|CAO02793.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
 gi|163257022|emb|CAO02794.1| putative exo-ribonuclease protein [Medicago truncatula var.
           truncatula]
          Length = 92

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/79 (11%), Positives = 23/79 (29%), Gaps = 13/79 (16%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF------------NEQN 91
           F  ++ P     +     + G+T+E L+D      +  +                   + 
Sbjct: 11  FHTYVKPQI-PVTNYRYDITGLTEEHLQDGMPLKEVREKILQILYNGESIGKVRLDGGKA 69

Query: 92  AEWIAHNAKFDVGFINAEL 110
              + H+   D+  +    
Sbjct: 70  RLLVGHDLAHDLDCLGMSY 88


>gi|29374964|ref|NP_814117.1| DNA polymerase, putative [Enterococcus faecalis V583]
 gi|29342422|gb|AAO80188.1| DNA polymerase, putative [Enterococcus faecalis V583]
 gi|315574067|gb|EFU86258.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B]
 gi|315582012|gb|EFU94203.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A]
          Length = 653

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 25/146 (17%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGI 65
           M+ +  DIET      ++ + ++G  +  D       F++ L        P E   L   
Sbjct: 1   MKTLNIDIET----YSDEDLTKVGVYKYADSP----NFEILLFAYSVDGQPVECEDLT-- 50

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                      S I  E      ++N   IA NA+F+   ++  L       LDP++   
Sbjct: 51  ----------ISEIPDEIVAALTDKNVLKIAFNAQFERVCLSKYLGIPYY--LDPAQWHC 98

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGIT 151
           T+  A          L    K   I 
Sbjct: 99  TMVHANEL--GLPASLGQCAKYLNIE 122


>gi|281203306|gb|EFA77506.1| hypothetical protein PPL_12108 [Polysphondylium pallidum PN500]
          Length = 1507

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 49/129 (37%), Gaps = 9/129 (6%)

Query: 63   HGITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHN--AKFDVGFINAELQRINK---- 115
               + + +    S+S +  +F D     ++  +I ++  + FD   +       N     
Sbjct: 1220 TKFSPDMVDKAQSWSDLVKDFVDIIGTGESQVFILYHATSNFDPNTLFGNNMLHNITLPA 1279

Query: 116  DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
            D    +  ++T+ + +     SR  + +L     + +++ + H A  D   L ++  ++ 
Sbjct: 1280 DLFSRTYFVNTIELIKDIEKHSRYSVKALTT--DLQLTNFAPHFANGDVLALMEILFRIT 1337

Query: 176  VGGSQINFG 184
                   FG
Sbjct: 1338 KSTHSNFFG 1346


>gi|213512154|ref|NP_001133639.1| Interferon-stimulated 20 kDa exonuclease-like 1 [Salmo salar]
 gi|209154778|gb|ACI33621.1| Interferon-stimulated 20 kDa exonuclease-like 1 [Salmo salar]
          Length = 378

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 64/201 (31%), Gaps = 28/201 (13%)

Query: 10  IVFDIET--TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  D E   TGL  +   +     V+          +  ++ P          +  GI  
Sbjct: 176 VAMDCEMVGTGLAGRTSELARCSLVDYHGNVL----YDKYIRPCQAVTDYR-TRWSGIQR 230

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L++   F    +E     +      I H    D   ++         P    R    +
Sbjct: 231 HHLQNALPFPKARTEILGILD--GKVVIGHALYNDFQALDFNH------PGHMIRDTSGM 282

Query: 128 SIARRK--HPSSRN-DLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
            + RR    P+ R   L  L        I +  R  H ++ D+    D+Y K++ G  + 
Sbjct: 283 RLLRRLAGFPTKRCVSLKILANSLLNRKIQVGRRG-HSSVEDALASLDLY-KLVEGEWE- 339

Query: 182 NFGFKTNEDRFFKEEKKTVPN 202
               +   +R    +  T+P+
Sbjct: 340 ----QDMRERMTDRDTGTLPD 356


>gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium]
          Length = 916

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 31/157 (19%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R    R  VFD+ETT LD  N  I+  G V L+D          F  P G        +L
Sbjct: 334 RLKNSRSFVFDLETTSLDYMNAAIV--GWVFLVDK-------DSFYVPVGHDYLDAPKQL 384

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                        F            +++   +  N K+D   +      +N        
Sbjct: 385 ------------DFDDALLTLKPILQDESINKVGQNLKYDAHVLANYQIDLNGI------ 426

Query: 123 IIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKH 158
             DT+  +   +  ++R++++ L   Y   ++H++ H
Sbjct: 427 SDDTMVKSYVLNSVATRHNMDDLSMHY---LNHQTIH 460


>gi|37200012|dbj|BAC95841.1| oligoribonuclease [Vibrio vulnificus YJ016]
          Length = 227

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 17/147 (11%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKN 55
           +  +    I  D+E TGLD    +IIEI ++        L         Q        K 
Sbjct: 47  MSFSDQNLIWIDLEMTGLDPDVHKIIEIASIVTDSELNILAEGPVLAIHQS--EEELAKM 104

Query: 56  SPEALKLH---GITDEFLKD-KPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFIN 107
                  H   G+  E ++  + +      +   F  +      +    ++   D  F+ 
Sbjct: 105 DEWCTNTHTGSGLV-ERVRGSQITEQEAVEQTIAFLEKWVPKGVSPICGNSIGQDRRFLY 163

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKH 134
             +  +          + TL    R+ 
Sbjct: 164 RHMPELEGYFHYRYIDVSTLKELTRRW 190


>gi|71032543|ref|XP_765913.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352870|gb|EAN33630.1| hypothetical protein TP01_0386 [Theileria parva]
          Length = 1786

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 22/143 (15%)

Query: 8    RKIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
            + +  DIETTGLD   ++I  +++  V        +        P+     P   +L  I
Sbjct: 1220 KAVGVDIETTGLDHNTNQIRLVQLS-VPNQPSLIIDLFKLSTNNPDAESVVPGRNEL--I 1276

Query: 66   TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
              E+LK               F  +    + HN KFD+ F+            D      
Sbjct: 1277 KCEWLK-------------KLFKSKETVKVFHNGKFDINFLRVYGFEFEGPIFDTMVASK 1323

Query: 126  TLSIARRKHPSSRNDLNSLCKRY 148
             L  +R         L  + +RY
Sbjct: 1324 LLVASRYI----SCKLTHVSERY 1342


>gi|218442576|ref|YP_002380897.1| DNA-directed DNA polymerase B [Cyanothece sp. PCC 7424]
 gi|218175347|gb|ACK74078.1| DNA-directed DNA polymerase B [Cyanothece sp. PCC 7424]
          Length = 603

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 32/111 (28%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  DIET GL+S +DRI+ IG +E       +    +F+  + R              
Sbjct: 52  RSLTVDIETLGLNSISDRILAIGVMES------DGKSHLFIDSDERII------------ 93

Query: 68  EFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHNA-KFDVGFINAELQRINKD 116
                          F  F  N Q      +N   FD+ FI    +    +
Sbjct: 94  ------------LVNFLSFLQNYQPEMLFGYNQITFDLPFIKQRAELYGLN 132


>gi|302406466|ref|XP_003001069.1| QDE-2-interacting protein [Verticillium albo-atrum VaMs.102]
 gi|261360327|gb|EEY22755.1| QDE-2-interacting protein [Verticillium albo-atrum VaMs.102]
          Length = 547

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 37/137 (27%), Gaps = 17/137 (12%)

Query: 74  PSFSSIFSEFWDFFNEQNA-------------EWIAHNAKFDVGFINAELQRIN-KDPLD 119
           P    +         +  A               + H+   D+ ++              
Sbjct: 394 PRLGELARRVRALLTQHTAAPASNPMQRNRTLILVGHDIAADLNYLQDIDVNPGQLQGFL 453

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
                  +  A R  PS RN L ++C    + I  R+ H A  D+       + + V   
Sbjct: 454 GCADTKDMHQAWRSCPSGRN-LGAVCG--DLEIPTRNLHNAGNDAAYTLQAMLALAVRAR 510

Query: 180 QINFGFKTNEDRFFKEE 196
                 +  ED     +
Sbjct: 511 VDEQQREDGEDAGAATD 527


>gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601]
 gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601]
          Length = 921

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 43/158 (27%), Gaps = 30/158 (18%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + R         D ETT LD     I+ I                  + P      P A 
Sbjct: 338 LARVRAAPLAAIDTETTSLDELRAEIVGI---------------SFSVEPGAAAYIPLA- 381

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
             H         +   + + +    +  +     +  + K+D           N      
Sbjct: 382 --H--DGPDTPAQLPLAEVLARLKPWLEDPKHPKLGQHVKYDRHVF------ANHGIEVR 431

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRY----GITISH 154
             + DT+  +        + L SL +R+    GI+   
Sbjct: 432 GYVHDTMLQSYVLEVHKPHGLASLAERHTGRTGISYED 469


>gi|331224619|ref|XP_003324981.1| hypothetical protein PGTG_06518 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309303971|gb|EFP80562.1| hypothetical protein PGTG_06518 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 309

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 55/157 (35%), Gaps = 24/157 (15%)

Query: 43  TFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSEF-------WDFFNEQNAEW 94
            ++ F+ P  R   S   + L GI+ + +    +   +  +F          F   N   
Sbjct: 113 RYRRFVRPVWRPILSQFCIDLTGISQDEVDQAMTLDLVLRDFDQNFVKPHKLFTTDNQTI 172

Query: 95  IAHNAKFDVG---FINAELQRINKDPLD-----PSRIIDTLSIARRKHPS-------SRN 139
              +  +D       +  L RI+ + L      P  +ID   + +   P+       +  
Sbjct: 173 WVTDGPWDFRDHFVKSTFLARIDVNCLPRYLRSPISLIDLRYLLKAFIPNVCPFPPPASL 232

Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
            L +    +G+    +  H  + D+H +  +  +M+ 
Sbjct: 233 SLFNAMAAFGLEFEGQQ-HSGIDDAHNVGRLLAEMVR 268


>gi|241950803|ref|XP_002418124.1| Oligoribonuclease, mitochondrial precursor, putative; exonuclease,
           putative [Candida dubliniensis CD36]
 gi|223641463|emb|CAX43424.1| Oligoribonuclease, mitochondrial precursor, putative [Candida
           dubliniensis CD36]
          Length = 257

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 15/123 (12%)

Query: 6   KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRT---FQVFLCPNGR--KNSPEA 59
           K   +  D E TGLD    D IIEI  +   +                P  R  K +   
Sbjct: 46  KKPLVWVDCEMTGLDVFGDDNIIEICCIITNEDLDIVDEKGYESTIYYPKSRLDKMNEWC 105

Query: 60  LKLH---GITDEFLKDKP-SFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAEL 110
           ++ H   G+T++ L +     S++  E   +  +     +      ++   D  F+  E 
Sbjct: 106 IETHGKSGLTEKILANPDRKLSAVEDELLQYIKKYVPEIRTGLLAGNSVHMDRFFMMKEF 165

Query: 111 QRI 113
            ++
Sbjct: 166 PKV 168


>gi|311251435|ref|XP_003124615.1| PREDICTED: putative RNA exonuclease NEF-sp-like [Sus scrofa]
          Length = 765

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 24/138 (17%)

Query: 45  QVFLCPNGRKNSPEALKLHGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKF 101
              + P+ +          GIT + L   P       +  +        +A  + H+   
Sbjct: 250 DELVKPDNKIVDYL-TSFSGITKKIL--NPVTTKLKDVQRQLKALL-PPDAVLVGHSLDL 305

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR-YG--ITISHRSKH 158
           D+  +                +IDT S+   +    R  L  L K   G  I    R  H
Sbjct: 306 DLRALKMI----------HPYVIDT-SLLYVREQGRRFKLKFLAKTILGKDIQCPDRLGH 354

Query: 159 GALLDSHLLSDV---YIK 173
            A+ D+    ++   ++K
Sbjct: 355 DAIEDARTTLELARYFLK 372


>gi|309365460|emb|CAP23182.2| hypothetical protein CBG_02004 [Caenorhabditis briggsae AF16]
          Length = 628

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 40/184 (21%)

Query: 25  RIIEIGAVELLDYSKTNRT---FQVFLCPNGRK-NSPEALKLHGITDEFLKDKPSFSSIF 80
            II+   + L    K  R    F  F+ P      S       GI+   +     F  +F
Sbjct: 31  EIIQFSVIVLNTKEKKIREDVKFDKFVRPIINPTLSDYCTNHTGISQNTVDSAEPFPVVF 90

Query: 81  SEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINKDPLD--PSRIIDTLSIARRK 133
            EF  +  E +       ++  + + D+ FI      + K PL     + +D  +  ++ 
Sbjct: 91  EEFSAWLQENDFQETRYAFVVFSRR-DLWFIAQYQFLLVKQPLPAMFKQWVDMNATMKKA 149

Query: 134 HPSSRND-----------------LN----------SLCKRYGITISHRSKHGALLDSHL 166
                                   L            +   Y I     + H A+ + H 
Sbjct: 150 QQGQDYHRPEEVSQVPNLQMRFKKLGKNQYFQNIIQDMSNIYNIPYEG-TAHNAMDNCHF 208

Query: 167 LSDV 170
           L+ +
Sbjct: 209 LAKI 212


>gi|224586194|ref|YP_002639993.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|224470722|gb|ACN48552.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|322717301|gb|EFZ08872.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. A50]
 gi|323132691|gb|ADX20121.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. 4/74]
 gi|326626042|gb|EGE32387.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Dublin str. 3246]
 gi|326630269|gb|EGE36612.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 9]
          Length = 185

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  ++   I  D+E TGLD + DRIIEI 
Sbjct: 5  MSADENNLIWIDLEMTGLDPERDRIIEIA 33


>gi|205355112|ref|YP_002228913.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 287/91]
 gi|205274893|emb|CAR39959.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 287/91]
          Length = 181

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  ++   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSADENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
 gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
          Length = 998

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 32/151 (21%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH------ 63
           + FD ETT LD     ++        +              +G       + L       
Sbjct: 399 VAFDTETTSLDPMQAELVGFSLAIADNGK----------DASGTDIRAAYVPLTHKTGSG 448

Query: 64  ------GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                 GI  +  + +  F+       D   ++    +A N K+D   +    +R     
Sbjct: 449 GDLFSDGI--KLAEGQAPFAEALERLKDLLEDEAVLKVAQNLKYDYLLM----KRHG--- 499

Query: 118 LDPSRIIDTLSIARRKHPSS-RNDLNSLCKR 147
           +      DT+ I+         + +++L +R
Sbjct: 500 VVMRSFDDTMLISYVLEAGKTTHGMDTLSER 530


>gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 957

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 20/155 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLCPNGRK 54
           + N+++ +  D ET  LDS +  ++ I             L + +     QV L P    
Sbjct: 351 KINQVKLVAVDTETDNLDSMSANLVGISFGLANGEACYIPLTHKE-----QVTLEPQQSD 405

Query: 55  NSPEALKL-HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
              E  ++    + E  K++ + ++   E        + + I  N K+D+        ++
Sbjct: 406 LFAEPAEVETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANHGVQV 465

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                      DT+  +   + + R++++ L  RY
Sbjct: 466 EGVAF------DTMLESYTLNSTGRHNMDELADRY 494


>gi|311113467|ref|YP_003984689.1| oligoribonuclease [Rothia dentocariosa ATCC 17931]
 gi|310944961|gb|ADP41255.1| oligoribonuclease [Rothia dentocariosa ATCC 17931]
          Length = 197

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 30/165 (18%)

Query: 17  TGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALK--------LH---G 64
           TGLD   D +IEIG  V   D +      ++ + P G +    AL+        +H   G
Sbjct: 2   TGLDLTQDALIEIGVLVTDSDLNILGEGVELVIKP-GSEAPAGALENMNSYVRKMHESSG 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +  E L+   S          +          A+   ++   D  F+  ++  + K    
Sbjct: 61  LL-EDLEHGVSMHEAQEAVLKYVKKYVPVAGKAQLGGNSVGMDKRFLERDMPDLMKHLHY 119

Query: 120 PSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
               + T+  +A R +P++R++                 H AL D
Sbjct: 120 RVIDVSTIKELAARWYPAARHN----------APVKTGNHRALGD 154


>gi|238486688|ref|XP_002374582.1| RNA exonuclease Rex2, putative [Aspergillus flavus NRRL3357]
 gi|317144078|ref|XP_003189562.1| RNA exonuclease Rex2 [Aspergillus oryzae RIB40]
 gi|220699461|gb|EED55800.1| RNA exonuclease Rex2, putative [Aspergillus flavus NRRL3357]
          Length = 191

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 56/160 (35%), Gaps = 37/160 (23%)

Query: 1   MIRKNKMRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           M        +V  D E TGLDS+ D+II++          T+   Q  L P+G +    A
Sbjct: 1   MPLARSFDPLVWIDCEMTGLDSEKDQIIQVCCF------VTDANLQ-LLDPHGFETVIHA 53

Query: 60  LKL---------------HGITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNA 99
            K                 G+T   L    +  S  SE   +        + A    ++ 
Sbjct: 54  SKTTMDNMSQWCIDTHGRTGLTAAVLASTVTPESAASELLAYIQRYVPQPRTALLAGNSV 113

Query: 100 KFDVGFINA-----ELQRINKDPLDPSRIIDTLSIARRKH 134
             D  F++       L+ ++   LD    + TL  A R+ 
Sbjct: 114 HADKAFLSRGPYAKVLEWLHYRILD----VSTLKEAARRW 149


>gi|57529484|ref|NP_001006573.1| exonuclease NEF-sp [Gallus gallus]
 gi|53127380|emb|CAG31073.1| hypothetical protein RCJMB04_2b3 [Gallus gallus]
          Length = 773

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 25/169 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL- 70
            D E   L ++ + ++ +  V+       N      + P     +    +  G+T + L 
Sbjct: 225 LDCEMC-LTARGNEVVRVSLVDAEGQCLLNE----LVKPESVIVN-YCTRYSGVTRKMLL 278

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             K     I +         +A  + H+   D+  +           + PS I  +L  A
Sbjct: 279 PVKTRLPDIQTRLKKIL-PHDAVLVGHSLNADLQALQM---------IHPSVIDTSLLFA 328

Query: 131 RRKHPSSRNDLNSLCKR-YG--ITISHRSKHGALLDSHL---LSDVYIK 173
           R +    R  L  L K   G  I    R  H    D+     L+  +IK
Sbjct: 329 RNE--GRRFKLKFLAKAVLGKEIQCEQRLGHDPAEDARAALELAQFFIK 375


>gi|114320658|ref|YP_742341.1| oligoribonuclease [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311672|sp|Q0A8I6|ORN_ALHEH RecName: Full=Oligoribonuclease
 gi|114227052|gb|ABI56851.1| Exonuclease, RNase T and DNA polymerase III [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 193

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK----NSP 57
           +  ++   +  D+E TGLD   DRIIEI  +             V       +       
Sbjct: 1   MGFSEHNLVWLDLEMTGLDPDTDRIIEIATLVTDSQLNILAEGPVLAVRQSEQALAAMDE 60

Query: 58  EALKLHG-------ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
              + HG       +    L +  + +   +    +  E+ +    ++   D  F+   +
Sbjct: 61  WNTRTHGESGLIERVRASHLDEAAAEAETLAFLRRWVPERASPMCGNSICQDRRFLYRYM 120

Query: 111 QRINKDPLDPSRIIDTLS-IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R+       +  + TL  +A R HP     L           S ++ H AL D
Sbjct: 121 PRLEAWFHYRNLDVSTLKLLANRWHPE---VLQ--------GFSKKATHQALED 163


>gi|156847880|ref|XP_001646823.1| hypothetical protein Kpol_2002p35 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117504|gb|EDO18965.1| hypothetical protein Kpol_2002p35 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 481

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 60/216 (27%), Gaps = 55/216 (25%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI  N+     FD+E    +  ND + EIG                     G    P   
Sbjct: 195 MISANQCILFSFDVEA--YEFDNDVVTEIGISIYDPRE----------NLFGENIVPLIR 242

Query: 61  KLHGITDEFLK---------------DKPSFSSIFSEFWDFFNE---------------Q 90
             H I +E L                +  S      +  DF                   
Sbjct: 243 NFHLIVEESLSLTNKKYVCDFKNCYLNGESIVMNLQQTVDFIQSLVNYYLIPGNLEQQSW 302

Query: 91  NAEWIAHNAKFDVGFINAELQRINKDPLDPSRII---------DTLSIARRKHPSSRNDL 141
               + HN K D+ ++     R+    L+ + +I         DT  I ++        L
Sbjct: 303 KRAIVGHNIKGDINWMKNLGIRL--PELEYTNMISVIKGVYVMDTEQIYKKNITEEGCSL 360

Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             + +   I   H   H A  D++    + + +   
Sbjct: 361 GKILRLLKIP--HAFLHNAGNDANYTLKLLLHLTSA 394


>gi|156550374|ref|XP_001599410.1| PREDICTED: similar to three prime repair exonuclease 1, putative
           [Nasonia vitripennis]
          Length = 325

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 19/144 (13%)

Query: 9   KIVFDIETTGL--DSKNDRIIEIGAV---------ELLDYSKTNRTFQVF---LCPNGRK 54
            + FD+ET+ L    +  RI E+  V         ++ D     R        +CPN   
Sbjct: 15  FVFFDLETSDLIKGHRMPRITELSMVATDRNSLKNDMRDKLALPRIMHKLTIPICPNAPI 74

Query: 55  NSPEALKLHGITDEFLKDKPSF-SSIFSEFWDFFNEQNAE--WIAHN-AKFDVGFINAEL 110
           +   +   + + ++ L+    F    ++    F N       ++AHN  +FD     +E+
Sbjct: 75  HQEASFASN-LWNDSLEHFKPFDKDTYNMIMLFINRLPGVICFVAHNGNRFDYPVFLSEI 133

Query: 111 QRINKDPLDPSRIIDTLSIARRKH 134
            ++     D    +DTL   +   
Sbjct: 134 DKLQMTFPDRILCVDTLIAFKEFF 157


>gi|110289094|gb|AAP53812.2| CAF1 family ribonuclease containing protein, expressed [Oryza
           sativa Japonica Group]
          Length = 871

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 55/207 (26%), Gaps = 27/207 (13%)

Query: 35  LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD--KPSFSSIFSEFWDFFNEQNA 92
           +D      T    +   G   +P +     IT+  +K   + ++   F    D  N+   
Sbjct: 507 VDAGGEQDTVAANVDVLGIPPAPAS-----ITNAIVKSVWRENYREQFKLVVDALNQPRR 561

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
                    D+ F       I + P D                     L  L +  GI  
Sbjct: 562 HL---YIAVDMEFAADATTNIRRRPADAEDH------------GFSGKLTGLAEHLGIRR 606

Query: 153 SHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKR---- 208
           +  + H A  D+ L    + K+    S                 ++    I   +     
Sbjct: 607 TGGAAHHAGSDALLTLSCFFKIFRSLSGQQLHQLDARRGLLAGLEEWNMAIKCARHIDDH 666

Query: 209 -DKPLFTRITKEELDEHDKTIQTLGKN 234
                   +  E L E  + I  L  +
Sbjct: 667 TRNIKVIEVVAENLGEEARRIGELVDS 693


>gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu]
          Length = 917

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    R++ +                  + P      P A +        L
Sbjct: 343 AFDTETTSLDPMTARLVGL---------------SFSVEPGKAAYLPVAHR-----GPDL 382

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++     + +    +    + + +  + K+D   +       N          DTL  +
Sbjct: 383 PEQLPLDEVLARLKPWLESADRKKVGQHLKYDAQVL------ANYGIELSGIEHDTLLES 436

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 437 YVLESHRTHDMDSLALRHLGV 457


>gi|169618447|ref|XP_001802637.1| hypothetical protein SNOG_12414 [Phaeosphaeria nodorum SN15]
 gi|160703615|gb|EAT80227.2| hypothetical protein SNOG_12414 [Phaeosphaeria nodorum SN15]
          Length = 540

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 63/206 (30%), Gaps = 51/206 (24%)

Query: 10  IVFDIET-TGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEALKL---- 62
           +  D E  T   +  D++ EIG V  E  D  +       +     +K     L++    
Sbjct: 131 VTVDTEAWT---ANTDQMTEIGIVIAEYKDGKEIGAEIGDYAENVMKKMKYHHLRICENA 187

Query: 63  HGITDEFLKDKP-----------SFSSIFSEFWDFFN--------------EQNAEWIAH 97
           H  T       P           +F+       D                 ++    + H
Sbjct: 188 HLKTTSPWMRGPEGNRFGQSRFVTFAE-ARRILDRILNQPIISDDPDLAGLKRPIILVGH 246

Query: 98  NAKFDVGFINAELQRINKDPLDPSRI---IDTLSIARRK-------HPSSRNDLNSLCKR 147
               D   + +    +N D    + I   IDT  + R          P ++  L+ LC++
Sbjct: 247 TLDHDTEHMQST--GLNYDFTQHATIVAEIDTQKLVRELSAWTAPDFPGNKIGLDVLCEQ 304

Query: 148 YGITISHRSKHGALLDSHLLSDVYIK 173
                +H   H AL D+     ++  
Sbjct: 305 V-FNFAHEDPHTALNDAART--IFCA 327


>gi|134083163|emb|CAK48615.1| unnamed protein product [Aspergillus niger]
          Length = 2208

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 14/116 (12%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     DS  D+I+ I   ++   +  TNR      +        PE    
Sbjct: 258 LAFDIETTKLPLKFPDSVIDQIMMISYMIDGQGFLITNREIVSEDINDFEYTPKPEYSG- 316

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAK-FDVGFINAELQRINKD 116
                  + ++P    +   F++   E     IA +N   FD  F+ A    +  D
Sbjct: 317 ----PFMIFNEPDERGVLERFFEHIKEAKPTVIATYNGDFFDWPFVEARASVLGID 368


>gi|126180159|ref|YP_001048124.1| exonuclease-like protein [Methanoculleus marisnigri JR1]
 gi|125862953|gb|ABN58142.1| exonuclease-like protein [Methanoculleus marisnigri JR1]
          Length = 386

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 29/139 (20%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIET GL S+   II IG   +   S   R +                    ++  
Sbjct: 175 FVFLDIETLGLFSRP--IILIGLARVSGGSIAVRQY--------------------LSRS 212

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTL 127
             ++  + +++  +       + +  +  N + FDV +I   L              D L
Sbjct: 213 AEEEGAALAAVLPD----LEAEGSALVTFNGRAFDVPYIRDRLACHGIPADLAVPHFDVL 268

Query: 128 SIARRKHPS--SRNDLNSL 144
             ARR+         L +L
Sbjct: 269 HFARRRWRGSLPSCRLGAL 287


>gi|16763172|ref|NP_458789.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. CT18]
 gi|16767599|ref|NP_463214.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|29144651|ref|NP_807993.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. Ty2]
 gi|56416144|ref|YP_153219.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|62182799|ref|YP_219216.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
 gi|161505144|ref|YP_001572256.1| oligoribonuclease [Salmonella enterica subsp. arizonae serovar
          62:z4,z23:-- str. RSK2980]
 gi|161617623|ref|YP_001591588.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi B str. SPB7]
 gi|167553558|ref|ZP_02347307.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA29]
 gi|167994766|ref|ZP_02575857.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          4,[5],12:i:- str. CVM23701]
 gi|168231388|ref|ZP_02656446.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Kentucky str. CDC 191]
 gi|168237081|ref|ZP_02662139.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. SL480]
 gi|168244869|ref|ZP_02669801.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Heidelberg str. SL486]
 gi|168263295|ref|ZP_02685268.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Hadar str. RI_05P066]
 gi|168467067|ref|ZP_02700915.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Newport str. SL317]
 gi|168822519|ref|ZP_02834519.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Weltevreden str. HI_N05-537]
 gi|194446159|ref|YP_002043608.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Newport str. SL254]
 gi|194451819|ref|YP_002048396.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Heidelberg str. SL476]
 gi|194472818|ref|ZP_03078802.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Kentucky str. CVM29188]
 gi|194733922|ref|YP_002117294.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. CVM19633]
 gi|197248139|ref|YP_002149267.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Agona str. SL483]
 gi|197263840|ref|ZP_03163914.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA23]
 gi|197365070|ref|YP_002144707.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. AKU_12601]
 gi|198244671|ref|YP_002218237.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Dublin str. CT_02021853]
 gi|200389037|ref|ZP_03215649.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Virchow str. SL491]
 gi|204927249|ref|ZP_03218451.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Javiana str. GA_MM04042433]
 gi|207859499|ref|YP_002246150.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|213052288|ref|ZP_03345166.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. E00-7866]
 gi|213419498|ref|ZP_03352564.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. E01-6750]
 gi|213428680|ref|ZP_03361430.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. E02-1180]
 gi|213583916|ref|ZP_03365742.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-0664]
 gi|213650568|ref|ZP_03380621.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. J185]
 gi|213850085|ref|ZP_03380983.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. M223]
 gi|238910511|ref|ZP_04654348.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Tennessee str. CDC07-0191]
 gi|289805592|ref|ZP_06536221.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. AG3]
 gi|289829989|ref|ZP_06547440.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-3139]
 gi|54038786|sp|P65600|ORN_SALTI RecName: Full=Oligoribonuclease
 gi|54041583|sp|P65599|ORN_SALTY RecName: Full=Oligoribonuclease
 gi|59797989|sp|Q5PLG7|ORN_SALPA RecName: Full=Oligoribonuclease
 gi|81309509|sp|Q57GM7|ORN_SALCH RecName: Full=Oligoribonuclease
 gi|25338361|pir||AI1047 oligoribonuclease (EC 3.1.-.-) [imported] - Salmonella enterica
          subsp. enterica serovar Typhi (strain CT18)
 gi|16422913|gb|AAL23173.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|16505480|emb|CAD06830.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi]
 gi|29140290|gb|AAO71853.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. Ty2]
 gi|56130401|gb|AAV79907.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|62130432|gb|AAX68135.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
 gi|160866491|gb|ABX23114.1| hypothetical protein SARI_03281 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
 gi|161366987|gb|ABX70755.1| hypothetical protein SPAB_05483 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194404822|gb|ACF65044.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Newport str. SL254]
 gi|194410123|gb|ACF70342.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Heidelberg str. SL476]
 gi|194459182|gb|EDX48021.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Kentucky str. CVM29188]
 gi|194709424|gb|ACF88645.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. CVM19633]
 gi|195630566|gb|EDX49178.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Newport str. SL317]
 gi|197096547|emb|CAR62157.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. AKU_12601]
 gi|197211842|gb|ACH49239.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Agona str. SL483]
 gi|197242095|gb|EDY24715.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA23]
 gi|197289951|gb|EDY29310.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. SL480]
 gi|197939187|gb|ACH76520.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Dublin str. CT_02021853]
 gi|199606135|gb|EDZ04680.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Virchow str. SL491]
 gi|204323914|gb|EDZ09109.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Javiana str. GA_MM04042433]
 gi|205322027|gb|EDZ09866.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA29]
 gi|205327412|gb|EDZ14176.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          4,[5],12:i:- str. CVM23701]
 gi|205334333|gb|EDZ21097.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Kentucky str. CDC 191]
 gi|205336339|gb|EDZ23103.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Heidelberg str. SL486]
 gi|205341098|gb|EDZ27862.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Weltevreden str. HI_N05-537]
 gi|205347926|gb|EDZ34557.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Hadar str. RI_05P066]
 gi|206711302|emb|CAR35680.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|261249445|emb|CBG27309.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. D23580]
 gi|267996684|gb|ACY91569.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. 14028S]
 gi|301160842|emb|CBW20373.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. SL1344]
 gi|312915451|dbj|BAJ39425.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. T000240]
 gi|320088780|emb|CBY98538.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Weltevreden str. 2007-60-3289-1]
 gi|321223225|gb|EFX48295.1| 3'-to-5' oligoribonuclease (orn) [Salmonella enterica subsp.
          enterica serovar Typhimurium str. TN061786]
 gi|322615515|gb|EFY12435.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 315996572]
 gi|322618575|gb|EFY15464.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 495297-1]
 gi|322622012|gb|EFY18862.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 495297-3]
 gi|322627084|gb|EFY23876.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 495297-4]
 gi|322631043|gb|EFY27807.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 515920-1]
 gi|322637738|gb|EFY34439.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 515920-2]
 gi|322642402|gb|EFY39006.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 531954]
 gi|322645663|gb|EFY42188.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. NC_MB110209-0054]
 gi|322650497|gb|EFY46905.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. OH_2009072675]
 gi|322653449|gb|EFY49779.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. CASC_09SCPH15965]
 gi|322659724|gb|EFY55967.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 19N]
 gi|322662065|gb|EFY58281.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 81038-01]
 gi|322666186|gb|EFY62364.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. MD_MDA09249507]
 gi|322672606|gb|EFY68717.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 414877]
 gi|322676036|gb|EFY72107.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 366867]
 gi|322680520|gb|EFY76558.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 413180]
 gi|322684586|gb|EFY80590.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 446600]
 gi|323192901|gb|EFZ78127.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 609458-1]
 gi|323197223|gb|EFZ82363.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 556150-1]
 gi|323201660|gb|EFZ86724.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 609460]
 gi|323206174|gb|EFZ91136.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 507440-20]
 gi|323213183|gb|EFZ97985.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 556152]
 gi|323215556|gb|EGA00300.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB101509-0077]
 gi|323219541|gb|EGA04026.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB102109-0047]
 gi|323227844|gb|EGA11998.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB110209-0055]
 gi|323229014|gb|EGA13143.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB111609-0052]
 gi|323236374|gb|EGA20450.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 2009083312]
 gi|323237506|gb|EGA21567.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 2009085258]
 gi|323241828|gb|EGA25857.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 315731156]
 gi|323248023|gb|EGA31960.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2009159199]
 gi|323254646|gb|EGA38457.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008282]
 gi|323258295|gb|EGA41972.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008283]
 gi|323259572|gb|EGA43206.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008284]
 gi|323265845|gb|EGA49341.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008285]
 gi|323270289|gb|EGA53737.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008287]
 gi|332991164|gb|AEF10147.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. UK-1]
          Length = 181

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          +  ++   I  D+E TGLD + DRIIEI 
Sbjct: 1  MSADENNLIWIDLEMTGLDPERDRIIEIA 29


>gi|317036104|ref|XP_001397618.2| DNA polymerase epsilon catalytic subunit A [Aspergillus niger CBS
           513.88]
          Length = 2233

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 14/116 (12%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     DS  D+I+ I   ++   +  TNR      +        PE    
Sbjct: 283 LAFDIETTKLPLKFPDSVIDQIMMISYMIDGQGFLITNREIVSEDINDFEYTPKPEYSG- 341

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAK-FDVGFINAELQRINKD 116
                  + ++P    +   F++   E     IA +N   FD  F+ A    +  D
Sbjct: 342 ----PFMIFNEPDERGVLERFFEHIKEAKPTVIATYNGDFFDWPFVEARASVLGID 393


>gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC]
 gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC]
          Length = 921

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 43/158 (27%), Gaps = 30/158 (18%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + R         D ETT LD     I+ I                  + P      P A 
Sbjct: 338 LARVRAAPLAAIDTETTSLDELRAEIVGI---------------SFSVEPGAAAYIPLA- 381

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
             H         +   + + +    +  +     +  + K+D           N      
Sbjct: 382 --H--DGPDTPAQLPLAEVLARLKPWLEDPKHPKLGQHVKYDRHVF------ANHGIEVR 431

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRY----GITISH 154
             + DT+  +        + L SL +R+    GI+   
Sbjct: 432 GYVHDTMLQSYVLEVHKPHGLASLAERHTGRTGISYED 469


>gi|326791345|ref|YP_004309166.1| DNA polymerase B exonuclease [Clostridium lentocellum DSM 5427]
 gi|326542109|gb|ADZ83968.1| DNA polymerase B exonuclease [Clostridium lentocellum DSM 5427]
          Length = 335

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 26/135 (19%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIET+GL+   D I+ IG                FL         E  +L       L+
Sbjct: 13  LDIETSGLNKHIDYIVCIGV--------------TFLN--------ETDELTH-HQWMLQ 49

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIIDTLSI 129
                  I S F +F    +  +      FD  F+ A       +P  L    +ID +  
Sbjct: 50  LPEEEKEILSCFLEFTQRFSHVYTYGGKHFDWPFLLARCAFHQLNPSMLQSLHLID-MKK 108

Query: 130 ARRKHPSSRNDLNSL 144
           + +   ++R +L   
Sbjct: 109 SLQHFGATRINLEDA 123


>gi|108759901|ref|YP_629872.1| putative DNA polymerase II [Myxococcus xanthus DK 1622]
 gi|108463781|gb|ABF88966.1| putative DNA polymerase II [Myxococcus xanthus DK 1622]
          Length = 804

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 88/267 (32%), Gaps = 56/267 (20%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEI------GAVELLDYSKTNRTFQ----VFLCPNGRK 54
           + +R++ FD+ETTGLD  + R+  +      GA E L+    + + +      L    R 
Sbjct: 150 DALRRMQFDLETTGLDPAHHRVFLVALRGPDGATETLEAQGDDDSAEADLLYHLAERVRA 209

Query: 55  NSPEALK---LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-- 109
             P+ ++   LHG    FL  +     +            A  + H        +     
Sbjct: 210 WDPDVIENHNLHGFDLPFLARRARHLGV----SLALGRAGAPGLRHRPSARGAALGRPVP 265

Query: 110 -----LQRINKDPLDPSRIIDTLSIARRKHPSSR----NDLNSLCKRYGITISHRSKH-- 158
                  R  +  +     IDTL    R   S+R    + L ++ K  G+    R  H  
Sbjct: 266 GAPPDAMRRARYTVPGREFIDTLDAVLRHDFSTRDLPGHGLKAVAKHLGLAGPERE-HIP 324

Query: 159 GA-LLDSHLL--SDV-------------YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPN 202
           GA + D      + V               +++ G +   F       R ++      P 
Sbjct: 325 GARVYDVFRTDPARVRRYARDDVTEAGGLARLLGGAA---FALARMAPRRYERLADAGPA 381

Query: 203 ISLLKRDKPLFTRITKEE---LDEHDK 226
             +L    PL  R    E   L  H +
Sbjct: 382 TGVLD---PLLVRAYLREGAALPAHQE 405


>gi|312797502|ref|YP_004030424.1| hypothetical protein RBRH_03054 [Burkholderia rhizoxinica HKI 454]
 gi|312169277|emb|CBW76280.1| unnamed protein product [Burkholderia rhizoxinica HKI 454]
          Length = 231

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 58/184 (31%), Gaps = 27/184 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEALKLHGIT 66
            +  DIE  G       ++   +       +   TF   L   P    +  +        
Sbjct: 10  YVSTDIEADGPIPGPHSMLSFASAAYTGDKQLIATFSANLDTLPGASPHPVQ-------- 61

Query: 67  DEFLKDKP-----------SFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRI 113
             + K +P           +       + D+         ++A+ A FD  F+   + R 
Sbjct: 62  HAWWKTQPDAWAACRTDTRAPEEALPAYVDWVEALPGKPVFVAYPAGFDFTFMFWYMMRF 121

Query: 114 -NKDPLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
             + P   S   I TL+ A    P  +     L K +    +H   H AL D+     ++
Sbjct: 122 AGRCPFSWSALDIKTLAFAMTGLPYRKTIKPKLPKHW--FDAHPHTHVALDDAIEQGALF 179

Query: 172 IKMM 175
             M+
Sbjct: 180 CNML 183


>gi|294496412|ref|YP_003542905.1| hypothetical protein Mmah_1765 [Methanohalophilus mahii DSM 5219]
 gi|292667411|gb|ADE37260.1| conserved hypothetical protein [Methanohalophilus mahii DSM 5219]
          Length = 254

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 52/148 (35%), Gaps = 46/148 (31%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            DIETTGL   + +I  IG  +  D     ++F                 + GI      
Sbjct: 90  VDIETTGLSPSSSKITVIGVYDGKD----VKSF-----------------VRGI------ 122

Query: 72  DKPSFSSIFSEF--WDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              +   I  E   +DF        +  N A+FD+ FI  E  +I  + +      D + 
Sbjct: 123 ---NLEEIVQEMEQYDF-------LVTFNGARFDLPFIQREFPQITMEQMHT----DLMY 168

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRS 156
             RR     +  L ++    GI  S  +
Sbjct: 169 PLRRI--GLKGGLKNIEHLLGINRSEET 194


>gi|283781545|ref|YP_003372300.1| DNA polymerase I [Pirellula staleyi DSM 6068]
 gi|283439998|gb|ADB18440.1| DNA polymerase I [Pirellula staleyi DSM 6068]
          Length = 966

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 27/140 (19%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +V D ETT +  +   I+        D        + +  P     + +AL L       
Sbjct: 383 LVIDTETTSVQPRWAEIVGYSFC-YRDG-------EAWYLPIRAPENEQALCL------- 427

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
             D  +   +   F     +     +  N K+D+  + +    +           DT+  
Sbjct: 428 --DATA---VADLFRPVLEDPAIAKVGQNIKYDMVVLRSAGIELRGAAF------DTMVA 476

Query: 130 ARRKHPSSR-NDLNSLCKRY 148
                P  R ++L+ L +R+
Sbjct: 477 DYLIDPGERSHNLDELARRH 496


>gi|300949122|ref|ZP_07163165.1| exonuclease [Escherichia coli MS 116-1]
 gi|300451432|gb|EFK15052.1| exonuclease [Escherichia coli MS 116-1]
          Length = 199

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 55/190 (28%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  N+   I  D+E TGLD + DRIIEI                  +         E   
Sbjct: 19  MSANENNLIWIDLEMTGLDLERDRIIEIA---------------TLVTDANLNILAEGPT 63

Query: 60  LKLHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEW 94
           + +H  +DE L                          D+ +  +       +     +  
Sbjct: 64  IAVHQ-SDEQLALMDDWNVRTHTSSGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 122

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITIS 153
             ++   D  F+   +  +          + TL  +ARR  P     L+          +
Sbjct: 123 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI---LD--------GFT 171

Query: 154 HRSKHGALLD 163
            +  H A+ D
Sbjct: 172 KQGTHQAMDD 181


>gi|227520155|ref|ZP_03950204.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227072400|gb|EEI10363.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
          Length = 653

 Score = 40.6 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 25/146 (17%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGI 65
           M+ +  DIET      ++ + ++G  +  D       F++ L        P E   L   
Sbjct: 1   MKTLNIDIET----YSDEDLTKVGVYKYADSP----NFEILLFAYSVDGQPVECEDLT-- 50

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                      S I  E      ++N   IA NA+F+   ++  L       LDP++   
Sbjct: 51  ----------ISEIPDEIVAALTDKNVLKIAFNAQFERVCLSKHLGVPYY--LDPAQWHC 98

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGIT 151
           T+  A          L    K   I 
Sbjct: 99  TMVHANEL--GLPASLGQCAKYLNIE 122


>gi|260361286|ref|ZP_05774394.1| oligoribonuclease [Vibrio parahaemolyticus K5030]
 gi|308114248|gb|EFO51788.1| oligoribonuclease [Vibrio parahaemolyticus K5030]
          Length = 148

 Score = 40.6 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 13/145 (8%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNG--RKNSP 57
           +  +    I  D+E TGLD +  +IIEI ++             V     P     K   
Sbjct: 1   MSFSDQNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELAKMDD 60

Query: 58  EALKLH---GITDEFLKD-KPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAE 109
                H   G+  E +++ K S     ++  +F  +      +    ++   D  F+   
Sbjct: 61  WCTNTHTASGLV-ERVRNSKISEQDAVAQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKH 119

Query: 110 LQRINKDPLDPSRIIDTLSIARRKH 134
           +  + +        + TL    R+ 
Sbjct: 120 MPELEEYFHYRYLDVSTLKELTRRW 144


>gi|160879478|ref|YP_001558446.1| exonuclease-like protein [Clostridium phytofermentans ISDg]
 gi|160428144|gb|ABX41707.1| exonuclease-like protein [Clostridium phytofermentans ISDg]
          Length = 392

 Score = 40.6 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 30/152 (19%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +    + FDIETTG  +    +  IG                F+                
Sbjct: 25  SNQEILFFDIETTGFSASMSYVYLIGCAYFDQ--------STFV---------------- 60

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQ----RINKDPLD 119
           +   F++D      + + F++F        + +N   FD+ ++  +        N + + 
Sbjct: 61  LRQWFMEDIREEKELLTNFFEFIKSYRL-LVHYNGSGFDIPYLLQKCSTYQLSYNFEHII 119

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT 151
              I   L   ++  P+    L ++     + 
Sbjct: 120 SFDIYKQLIPYKKILPTKNLKLKTVEDFLKVE 151


>gi|121705856|ref|XP_001271191.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
 gi|119399337|gb|EAW09765.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
          Length = 568

 Score = 40.6 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 89  EQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTLSIARRKH-PSSRNDLNSLCK 146
           +++   + HN   DV ++     ++ ++        IDT  + R     SS+  L  + +
Sbjct: 468 QRSLVLVGHNTSMDVRYLQNLGIQVFENIATGFLESIDTAELHRHMRGESSQRSLGGMLQ 527

Query: 147 RYGITISHRSKHGALLDSHLLSDVYIKMMV 176
             GI   +   H    D+    +  ++M+V
Sbjct: 528 ELGIIGWY--LHNGGNDARYTLEALVRMVV 555


>gi|242780586|ref|XP_002479627.1| RNA exonuclease Rex2, putative [Talaromyces stipitatus ATCC 10500]
 gi|218719774|gb|EED19193.1| RNA exonuclease Rex2, putative [Talaromyces stipitatus ATCC 10500]
          Length = 189

 Score = 40.6 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 22/176 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEA 59
           ++++    +  D E TGLD + D+I++I         +      F+V +     K    +
Sbjct: 3   LQRSTAPLVWVDCEMTGLDPETDQILQICCFVTDAQLQLIEPNGFEVIVHQPKSKLDAMS 62

Query: 60  ---LKLH---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINA 108
              +  H   G+T   L      ++  S+   +        + A    ++   D  F+  
Sbjct: 63  QWCIDTHGRSGLTQAVLASTTDAATASSQLLAYIKRYVTEPRTALLAGNSIHADRAFLAK 122

Query: 109 ELQRINKDPLDPS-RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
               +  + L      + T+  A R+  S     + L +        R  H A  D
Sbjct: 123 PPYSLVLEWLHYRLLDVSTIKEAVRRWGS-----DELLRAA---PPKREVHLARDD 170


>gi|126699399|ref|YP_001088296.1| putative exonuclease [Clostridium difficile 630]
 gi|115250836|emb|CAJ68660.1| putative exonuclease [Clostridium difficile]
          Length = 329

 Score = 40.6 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 64/181 (35%), Gaps = 29/181 (16%)

Query: 7   MRK-IVFDIETTGLDSKND-----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M+  +  D E    +  +D            +I IG + + +   T   +   + P   K
Sbjct: 6   MKYKLFIDFE---FNILDDNKNKPKEYNGAELISIGGILVDNEFNTIDNYYSLVKPKYNK 62

Query: 55  N-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQ- 111
             S +   L  +    + + P+   +  +F+ +F + +   I +N   FD+  +    + 
Sbjct: 63  ILSNKCKNLTKLNQLDINNAPNLLYVMDDFYKWFCKFDDVTI-YNWGDFDITGLLTSFRV 121

Query: 112 --------RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                    +    +D    I        +  S +  L ++ K +  ++    KH +L D
Sbjct: 122 YKYTGKCLELFNMMIDIQPFISQHITYNNRILSKQISLLNMKKIF--SVEGDIKHNSLSD 179

Query: 164 S 164
           +
Sbjct: 180 A 180


>gi|222136615|ref|NP_001138396.1| putative RNA exonuclease NEF-sp isoform 2 [Homo sapiens]
 gi|12053043|emb|CAB66697.1| hypothetical protein [Homo sapiens]
 gi|119587244|gb|EAW66840.1| exonuclease NEF-sp, isoform CRA_c [Homo sapiens]
          Length = 743

 Score = 40.6 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 61/208 (29%), Gaps = 30/208 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E   L SK   +  I  V        +      + P  +          GIT + L 
Sbjct: 231 LDCEMC-LTSKGRELTRISLVAEGGCCVMDE----LVKPENKILDYL-TSFSGITKKIL- 283

Query: 72  DKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             P       +  +        +A  + H+   D+  +                +IDT S
Sbjct: 284 -NPVTTKLKDVQRQLKALL-PPDAVLVGHSLDLDLRALKMI----------HPYVIDT-S 330

Query: 129 IARRKHPSSRNDLNSLCKR-YG--ITISHRSKHGALLDSHLLSDVYIKMMVGG----SQI 181
           +   +    R  L  L K   G  I    R  H A  D+  + ++    +  G    +++
Sbjct: 331 LLYVREQGRRFKLKFLAKVILGKDIQCPDRLGHDATEDARTILELARYFLKHGPKKIAEL 390

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD 209
           N     N        ++      +L+  
Sbjct: 391 NLEALANHQEIQAAGQEPKNTAEVLQHP 418


>gi|222136613|ref|NP_112203.2| putative RNA exonuclease NEF-sp isoform 1 [Homo sapiens]
 gi|312261259|ref|NP_001185982.1| putative RNA exonuclease NEF-sp isoform 1 [Homo sapiens]
 gi|74760869|sp|Q96IC2|REXON_HUMAN RecName: Full=Putative RNA exonuclease NEF-sp
 gi|14043303|gb|AAH07646.1| Exonuclease NEF-sp [Homo sapiens]
 gi|46249780|gb|AAH68503.1| LOC81691 protein [Homo sapiens]
 gi|117644456|emb|CAL37723.1| hypothetical protein [synthetic construct]
 gi|119587242|gb|EAW66838.1| exonuclease NEF-sp, isoform CRA_a [Homo sapiens]
 gi|119587245|gb|EAW66841.1| exonuclease NEF-sp, isoform CRA_a [Homo sapiens]
 gi|189069400|dbj|BAG37066.1| unnamed protein product [Homo sapiens]
 gi|208965404|dbj|BAG72716.1| Putative RNA exonuclease NEF-sp [synthetic construct]
          Length = 774

 Score = 40.6 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 61/208 (29%), Gaps = 30/208 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E   L SK   +  I  V        +      + P  +          GIT + L 
Sbjct: 231 LDCEMC-LTSKGRELTRISLVAEGGCCVMDE----LVKPENKILDYL-TSFSGITKKIL- 283

Query: 72  DKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             P       +  +        +A  + H+   D+  +                +IDT S
Sbjct: 284 -NPVTTKLKDVQRQLKALL-PPDAVLVGHSLDLDLRALKMI----------HPYVIDT-S 330

Query: 129 IARRKHPSSRNDLNSLCKR-YG--ITISHRSKHGALLDSHLLSDVYIKMMVGG----SQI 181
           +   +    R  L  L K   G  I    R  H A  D+  + ++    +  G    +++
Sbjct: 331 LLYVREQGRRFKLKFLAKVILGKDIQCPDRLGHDATEDARTILELARYFLKHGPKKIAEL 390

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD 209
           N     N        ++      +L+  
Sbjct: 391 NLEALANHQEIQAAGQEPKNTAEVLQHP 418


>gi|13272524|gb|AAK17192.1|AF332193_1 exonuclease NEF-sp [Homo sapiens]
          Length = 774

 Score = 40.6 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 61/208 (29%), Gaps = 30/208 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E   L SK   +  I  V        +      + P  +          GIT + L 
Sbjct: 231 LDCEMC-LTSKGRELTRISLVAEGGCCVMDE----LVKPENKILDYL-TSFSGITKKIL- 283

Query: 72  DKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             P       +  +        +A  + H+   D+  +                +IDT S
Sbjct: 284 -NPVTTKLKDVQRQLKALL-PPDAVLVGHSLDLDLRALKMI----------HPYVIDT-S 330

Query: 129 IARRKHPSSRNDLNSLCKR-YG--ITISHRSKHGALLDSHLLSDVYIKMMVGG----SQI 181
           +   +    R  L  L K   G  I    R  H A  D+  + ++    +  G    +++
Sbjct: 331 LLYVREQGRRFKLKFLAKVILGKDIQCPDRLGHDATEDARTILELARYFLKHGPKKIAEL 390

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD 209
           N     N        ++      +L+  
Sbjct: 391 NLEALANHQEIQAAGQEPKNTAEVLQHP 418


>gi|50122884|ref|YP_052051.1| oligoribonuclease [Pectobacterium atrosepticum SCRI1043]
 gi|59798024|sp|Q6D037|ORN_ERWCT RecName: Full=Oligoribonuclease
 gi|49613410|emb|CAG76861.1| oligoribonuclease [Pectobacterium atrosepticum SCRI1043]
          Length = 180

 Score = 40.6 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 14/148 (9%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG----RKNS 56
           M+ +N +  I  D+E TGL+  +DRIIEI  +             V              
Sbjct: 1   MVDENNL--IWIDLEMTGLNPDHDRIIEIATLVTDANLNVLAEGPVLAVHQSDSQLALMD 58

Query: 57  PEALKLH---GITD----EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
              ++ H   G+TD        ++ +     +    +     +    ++   D  F+   
Sbjct: 59  DWNVRTHGASGLTDRVKVSTADERAAELETLAFLQKWVPAGKSPICGNSIGQDRRFLFRY 118

Query: 110 LQRINKDPLDPSRIIDTL-SIARRKHPS 136
           +  +          + TL  +ARR  P 
Sbjct: 119 MPELEAYFHYRYLDVSTLKELARRWKPE 146


>gi|163749340|ref|ZP_02156589.1| oligoribonuclease [Shewanella benthica KT99]
 gi|161331059|gb|EDQ01985.1| oligoribonuclease [Shewanella benthica KT99]
          Length = 181

 Score = 40.6 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 25/165 (15%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLD------YSKTNRTFQVFLCPNGRKNSPEALKLH-- 63
            D+E TGLD + D++IEI  +                 FQ               K H  
Sbjct: 11  VDLEMTGLDPETDKVIEIATIVTDKELNILAEGPVIAIFQT--DEQLATMDEWNQKHHGE 68

Query: 64  -GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAELQRINKDPL 118
            G+ +     + S     +   +F +    +  +    ++   D  F+N  + ++     
Sbjct: 69  SGLVERVRSSQYSEDDAIAMTIEFVSQYVPQGISPMCGNSIGQDRRFLNKYMPKLEDYFH 128

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  + T+    R+    + +L           + +  H AL+D
Sbjct: 129 YRNIDVSTIKELTRRW---KPELMD-------GFTKQGTHKALVD 163


>gi|68075407|ref|XP_679621.1| POM1 [Plasmodium berghei strain ANKA]
 gi|56500410|emb|CAH98073.1| POM1, putative [Plasmodium berghei]
          Length = 1808

 Score = 40.6 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 42/149 (28%)

Query: 5    NKMRKIVFDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            N ++    D+ETTGL+   ++I  I+I      +Y      + +F               
Sbjct: 1254 NGIKYCGLDMETTGLEVFGEKIRLIQISV---ENYPVII--YDMF--------------- 1293

Query: 63   HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
              IT+          +I        N++N   I  N KFD  F+         +  + + 
Sbjct: 1294 -NITNN---------NILDGLRKILNDENIVKIIQNGKFDTKFLL-------YNNFNITN 1336

Query: 123  IIDTLSIARRKHPSSR---NDLNSLCKRY 148
            I DT   ++    +       LN++ ++Y
Sbjct: 1337 IFDTYIASKLLDKNKNMYGFKLNNIVEKY 1365


>gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
 gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
          Length = 1000

 Score = 40.6 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 81/259 (31%), Gaps = 62/259 (23%)

Query: 9   KIVFDIETTGLDSKNDRII--EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            + FD ETT LD     I+   +   +  +             P+G       + L+   
Sbjct: 400 IVAFDTETTSLDVMQAEIVGFSLAIADNKN------------DPSGASIRAAYVPLNHKN 447

Query: 67  DEFLK-------DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
                       ++               + +   IA N K+D   +    +R   +   
Sbjct: 448 GVGDLLGGGLADNQIPLRDALPRLKALLEDTSVLKIAQNLKYDYLLM----KRYGIETKG 503

Query: 120 PSRIIDTLSIARRKHPSSR--NDLNSLCKRY-----------------GITISHRSKHGA 160
                DT+ ++      +   + ++SL +R+                  IT        A
Sbjct: 504 FD---DTMLLSYVLDGGANATHGMDSLSERWLGHKPIAYKDVAGSGKSNITFDLVDIDRA 560

Query: 161 LL----DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKR-----DKP 211
                 D+ +   +++ +     +     +     + + E+  VP ++ ++      D+ 
Sbjct: 561 TAYAAEDADVTLRLWLVL-----KPRLAAEKLATVYERLERPLVPVLAHMEERGITIDRQ 615

Query: 212 LFTRITKEELDEHDKTIQT 230
           + +R++  EL +    ++ 
Sbjct: 616 ILSRLSG-ELAQGAARLED 633


>gi|294490870|gb|ADE89626.1| exonuclease family protein [Escherichia coli IHE3034]
          Length = 826

 Score = 40.6 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 65/206 (31%), Gaps = 64/206 (31%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF-- 69
            D+ET G +  N  I+ IGAV              F  P   +  P    +  +TD    
Sbjct: 645 VDLETMGAN-TNAPIVVIGAV--------------FFDPETGEIGPVFYIVISLTDAMNT 689

Query: 70  -----------------------LKDKPSFSSIFSEFWDFFNEQNAE----WIAHNAKFD 102
                                  L D+         F +F NE + E       + A FD
Sbjct: 690 GAVPDGGTIEWWLKQSSEARAAILTDQVKMKDALLRFREFVNEHSDEKFVQVWGNGATFD 749

Query: 103 VGFINAELQRINKD-PLDPSRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
              +    +R++   P   S   D    + + +    ++R+          I      +H
Sbjct: 750 NAILRTSYERLDIPCPWHYSNDRDVRTIVEMGKITDFNARSV---------IPFEG-VRH 799

Query: 159 GALLDS-----HLLSDVYIKMMVGGS 179
            AL D+     ++ + +  K++   +
Sbjct: 800 NALDDALHQAKYVTATI-QKLIPNQA 824


>gi|255956365|ref|XP_002568935.1| Pc21g19440 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590646|emb|CAP96841.1| Pc21g19440 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 542

 Score = 40.6 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 40/130 (30%), Gaps = 27/130 (20%)

Query: 72  DKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII----- 124
           ++P+F    +  +  +   E     + HN   D+ F          D L   + +     
Sbjct: 284 EQPTFGIQQLADKVKNRLKESRPVLVGHNMFCDLLFFYRCFLGPLPDTLAEFQTVIHDLF 343

Query: 125 ----DTLSIARRKHPSSR--NDLNSLCKRY------GITISHR--------SKHGALLDS 164
               DT  +A     S    + L  L           I I  R          H A  DS
Sbjct: 344 PVLADTKYMATHDCGSLNPMSSLEELNTTLAGIESPKIEIDPRFGKYKFRKRTHEAGYDS 403

Query: 165 HLLSDVYIKM 174
            L +  +IK+
Sbjct: 404 MLAAMAFIKL 413


>gi|121705836|ref|XP_001271181.1| RNA exonuclease Rex2, putative [Aspergillus clavatus NRRL 1]
 gi|119399327|gb|EAW09755.1| RNA exonuclease Rex2, putative [Aspergillus clavatus NRRL 1]
          Length = 217

 Score = 40.6 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRT-FQVFLCPNG---RKNS 56
          + ++    +  D E TGLD + D+I++I   +   + +  +RT F+  +          S
Sbjct: 3  LERSTDPLVWIDCEMTGLDPETDQILQICCYITDANLTLLDRTGFETIIHHPRSTLEAMS 62

Query: 57 PEALKLHGIT 66
          P  +  HG T
Sbjct: 63 PWCIDTHGRT 72


>gi|311251478|ref|XP_003124631.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Sus scrofa]
          Length = 526

 Score = 40.6 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 35/136 (25%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E LKD   FS +     +         I HN   DV     +        L+  + + T 
Sbjct: 150 EELKDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTC 205

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 206 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLH 265

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 266 EAGYDAYITGLCFISM 281


>gi|213861675|ref|ZP_03386145.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 49

 Score = 40.6 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 194 KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAIWD 238
           ++ + T+  I + +  K      T EE+  H+  +   Q  G + +W 
Sbjct: 2   QQGEATIQRI-VRQASKLRVVFATDEEIAAHEARLDLVQKKGGSCLWR 48


>gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 936

 Score = 40.6 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 41/137 (29%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETT LD    +++ I              + V           E             
Sbjct: 366 FDTETTSLDPYQAQLVGISFAYY-----PGEAYYV-------PIPAE------------- 400

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
            + +  +I  EF           +  N K+D   +         +   P  I DT+    
Sbjct: 401 -RKAAQAIIEEFRPLLESTTQCKVGQNLKYDNLILRT----YGIEVAPP--IFDTMVAHY 453

Query: 132 RKHPSSRNDLNSLCKRY 148
              P   +++N++ + Y
Sbjct: 454 LVAPDKPHNMNAIAESY 470


>gi|330797720|ref|XP_003286906.1| hypothetical protein DICPUDRAFT_77782 [Dictyostelium purpureum]
 gi|325083072|gb|EGC36534.1| hypothetical protein DICPUDRAFT_77782 [Dictyostelium purpureum]
          Length = 338

 Score = 40.6 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 19/99 (19%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGL    D IIEI  ++L D S     F   + P    +          ++E
Sbjct: 158 ILFLDTETTGLSVATDEIIEISIIDLYDGS----HFYKLINPTTTVS----------SNE 203

Query: 69  FLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
           +  D +PS     S++ +      A  IAHN KFD G +
Sbjct: 204 YRCDMEPSLIEYLSKYQE----SGAYIIAHNEKFDRGIL 238


>gi|158426088|ref|YP_001527380.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
 gi|158332977|dbj|BAF90462.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
          Length = 1020

 Score = 40.6 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 32/153 (20%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +      + FD ETT LD     ++ +                  L PN     P A   
Sbjct: 426 KARDQGFVAFDTETTSLDPMQADLVGVSLA---------------LAPNEACYIPLA--- 467

Query: 63  H-----GI-TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
           H     G+ T+  L  +  F+   +       +     I HN K+D   +     R    
Sbjct: 468 HVGAGDGLFTEGLLPGQIPFNDALAALKGMLEDGGTLKIGHNVKYDAAVL----ARHG-- 521

Query: 117 PLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRY 148
            +  +    T+ ++         + ++ L  +Y
Sbjct: 522 -ITVAPYDCTMCMSYALDAGRGGHGMDELSIKY 553


>gi|158294097|ref|XP_315393.4| AGAP005383-PA [Anopheles gambiae str. PEST]
 gi|157015406|gb|EAA11024.5| AGAP005383-PA [Anopheles gambiae str. PEST]
          Length = 328

 Score = 40.6 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 57  PEALKLHG-ITDEFLKDKPSF-SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
           P    LH  I  + L+++P+       +  D+  +  A    H  + D  F+   L+   
Sbjct: 23  PAGSALHRQIAADELREEPAIVEQALEQMRDWIAKNPAI---HTCRTDASFLLRFLRVRK 79

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSL 144
              L     ++   ++R++ P+  + L++ 
Sbjct: 80  FSHLAACETLERYLVSRQRFPAWYSKLDTA 109


>gi|323977172|gb|EGB72259.1| entero exodeoxyribonuclease VIII [Escherichia coli TW10509]
          Length = 811

 Score = 40.6 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 58/199 (29%), Gaps = 53/199 (26%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALK------- 61
            D+ET G +  +  II IGA+       +    F   +     G     +A+K       
Sbjct: 633 IDLETMGKNPDSP-IISIGAIFFDPQTGEMGPEFNKTIDLETAGGVIDRDAIKWWLKQSR 691

Query: 62  ------LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINAELQ 111
                 L         D+        +  +F  E + E       + A FD   +    +
Sbjct: 692 EAQSAILT--------DEIPLDDALLQLREFIAENSGELFVQVWGNGANFDNVILRRSYE 743

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS-------KHGALLDS 164
           R    P       D     R      ++          I    R+       +H AL D+
Sbjct: 744 RQGI-PCPWRYYND--RDVRTIIELGKS----------IDFDARTPIQFEDIRHNALDDA 790

Query: 165 HLLSD----VYIKMMVGGS 179
              +     ++ K++   S
Sbjct: 791 RHQAKYVSAIWQKLIPNQS 809


>gi|99082604|ref|YP_614758.1| DNA polymerase I [Ruegeria sp. TM1040]
 gi|99038884|gb|ABF65496.1| DNA polymerase I [Ruegeria sp. TM1040]
          Length = 935

 Score = 40.6 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 36/150 (24%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT-- 66
            +  D ETTGL+     ++ I                  + P      P    L   T  
Sbjct: 349 YVAVDTETTGLNEMIADLVGISLC---------------VVPGQACYVP----LTHKTGN 389

Query: 67  -------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
                  D+  + +               +     I  N K+D            ++ +D
Sbjct: 390 SDDLFGSDDLAEGQMPLKDALEMLKPVLEDDAILKIGQNMKYDAKIFA-------RNGID 442

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRY 148
            + I DT+ ++   H     + +++L +RY
Sbjct: 443 VTPIDDTMLLSYALHGGMHGHGMDTLSERY 472


>gi|115384712|ref|XP_001208903.1| hypothetical protein ATEG_01538 [Aspergillus terreus NIH2624]
 gi|114196595|gb|EAU38295.1| hypothetical protein ATEG_01538 [Aspergillus terreus NIH2624]
          Length = 2206

 Score = 40.6 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 14/116 (12%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     DS  D+I+ I   ++   +  TNR      +        PE    
Sbjct: 256 LAFDIETTKLPLKFPDSVIDQIMMISYMIDGQGFLITNREIVSEDINDFEYTPKPEYSG- 314

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAK-FDVGFINAELQRINKD 116
                  + ++P   S+   F+    E     IA +N   FD  F+ A    +  D
Sbjct: 315 ----PFMIFNEPDERSVIERFFQHIKEAKPTVIATYNGDFFDWPFVEARASVLGID 366


>gi|331083823|ref|ZP_08332932.1| hypothetical protein HMPREF0992_01856 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403248|gb|EGG82808.1| hypothetical protein HMPREF0992_01856 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 374

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 23/126 (18%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FDIETTGL  K   +  IG +     +K  +  Q       + N  E           
Sbjct: 30  LFFDIETTGLSPKTSHVFLIGLISFQPDTKEWQLIQFL---QEQDNEEE----------- 75

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINK-DPLDPSRIIDTL 127
                   ++   F  F   +  + I  N + FD+ ++ +  ++    +P      +D  
Sbjct: 76  ------ERALLETFSAFAKSR-TQLIHFNGSSFDIPYLVSRYEKHQLPNPFSHKSSLDLY 128

Query: 128 SIARRK 133
               R 
Sbjct: 129 REFLRM 134


>gi|145503682|ref|XP_001437815.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404972|emb|CAK70418.1| unnamed protein product [Paramecium tetraurelia]
          Length = 516

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 62/220 (28%), Gaps = 46/220 (20%)

Query: 19  LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-----KLHGITDEFLKDK 73
            +  +D+   I                 +L    +    E+L     K+  +T+   + K
Sbjct: 176 FNKSDDKQTTIETTNGYQRKVI----YTYLEAYQKNMIGESLLKGEMKITKLTNAEKQAK 231

Query: 74  PSFSSIFS-----------EFWDFFNEQNAEWIAHNAKFDVGFINAEL--------QRIN 114
                 F            + W+         + HN   DV F  +          +   
Sbjct: 232 DDERQKFKADRFQTKTGFYQIWECILNSKKYLVGHNCFADVMFCYSHFVQCPPISWEEFK 291

Query: 115 KDPLDPSRII-DTLSIARRKHPSSR--------NDLNSLCKRYG---------ITISHRS 156
           +D       I DT  I +   P  +          + +L +            + +    
Sbjct: 292 EDIARNWPPIYDTKYIIQSAQPLEKIRGKLETSTSIENLAEFIKSNMNYIQIDVELEQNL 351

Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEE 196
            H A  D+++   ++I +    +Q     + N+   FK  
Sbjct: 352 YHTAGFDAYMTGFIFINLTKDFTQQELQNQKNKLNQFKSN 391


>gi|239995038|ref|ZP_04715562.1| ribonuclease T [Alteromonas macleodii ATCC 27126]
          Length = 49

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYS 38
           +V D+ET G ++  D ++E+ AV +    
Sbjct: 17 PVVIDVETAGFNAGTDALLELAAVTVKMDE 46


>gi|224141777|ref|XP_002324241.1| predicted protein [Populus trichocarpa]
 gi|222865675|gb|EEF02806.1| predicted protein [Populus trichocarpa]
          Length = 224

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 73/211 (34%), Gaps = 47/211 (22%)

Query: 6   KMRKIVFDIETTG-----------LDSKND--------RIIEIGAVELLDYSKTNRTFQV 46
           +   + FD E  G           L+   D        R+I+ G        K   T++ 
Sbjct: 19  RFPVVSFDTEFPGFFRNTPIDASDLNRYEDLKHNVDPLRLIQFGITVADASGKIGGTWEF 78

Query: 47  FLCPNGRKN--SPEALKL---HGIT-DEFLKDKPSFSSIFSEFWDFF--NEQNAEWIAHN 98
            L  +  K+     +++    +GI  D+  +D   F  +F++         +N  W+  +
Sbjct: 79  NLRFDLSKDLFVSRSIQFLQDNGIDFDKLRRDGIDF-DMFAQLLSRVVAKHRNLCWVTFH 137

Query: 99  AKFDVGFINAELQRINKDPLDP-------------SRIIDTLSIARRK--HPSSRNDLNS 143
             +D   ++  L+ +   PL                 ++D   +AR           L +
Sbjct: 138 GLYD---LSHTLRTVTNRPLPHSVAGFTSLLGIVFGDVVDIKYMARFCQGLRGGELGLAA 194

Query: 144 LCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           + K   +     + H A  DS L + VY KM
Sbjct: 195 IAKILNVERVGGAHH-AGSDSLLTARVYTKM 224


>gi|302848450|ref|XP_002955757.1| hypothetical protein VOLCADRAFT_66232 [Volvox carteri f.
           nagariensis]
 gi|300258950|gb|EFJ43182.1| hypothetical protein VOLCADRAFT_66232 [Volvox carteri f.
           nagariensis]
          Length = 162

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 15/136 (11%)

Query: 45  QVFLCPNGRKNSPEALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
              + P+         +  GIT + L+        +   F    + +    + H  + D+
Sbjct: 33  DELVLPHN-PILDYNTRYSGITSKMLEGCTNRLEDVRERFLTLVSSE-CLLVGHALENDL 90

Query: 104 GFINAELQRINKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
             +     RI          +DT +     K P  ++ L  L +R+         H + +
Sbjct: 91  AALRTCHGRI----------LDTAVLFPHPKGPPFKSALKILARRFLRRTIQDGAHDSAV 140

Query: 163 DSHLLSDV-YIKMMVG 177
           D+    D+  +K+  G
Sbjct: 141 DARTALDLALLKIKHG 156


>gi|254284002|ref|ZP_04958970.1| exonuclease I [gamma proteobacterium NOR51-B]
 gi|219680205|gb|EED36554.1| exonuclease I [gamma proteobacterium NOR51-B]
          Length = 408

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 22/116 (18%)

Query: 75  SFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP-----SRIIDTLS 128
           S      +            + +N+ +FD   +   L R   DP        +   D + 
Sbjct: 6   SECDFVDKIHAALAVPGTCGVGYNSIRFDDEVMRFALYRNFFDPYQREYANGNSRWDLID 65

Query: 129 IARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           +AR  +                    L  L    GI  +H + H AL D     D+
Sbjct: 66  VARAIYALRPEGTQWPARDNGLPSFRLEDLTAANGI--AHGAAHDALSDVDATIDL 119


>gi|84393404|ref|ZP_00992163.1| ribonuclease T [Vibrio splendidus 12B01]
 gi|84376013|gb|EAP92902.1| ribonuclease T [Vibrio splendidus 12B01]
          Length = 71

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 1  MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVE 33
          +  K + R    +V D+ET G +++ D ++EI A+ 
Sbjct: 35 LTLKKRFRGYFPVVIDVETAGFNAETDALLEICAIT 70


>gi|126172800|ref|YP_001048949.1| oligoribonuclease [Shewanella baltica OS155]
 gi|153002280|ref|YP_001367961.1| oligoribonuclease [Shewanella baltica OS185]
 gi|160877004|ref|YP_001556320.1| oligoribonuclease [Shewanella baltica OS195]
 gi|304410908|ref|ZP_07392525.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS183]
 gi|307304921|ref|ZP_07584671.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           BA175]
 gi|166216585|sp|A3D017|ORN_SHEB5 RecName: Full=Oligoribonuclease
 gi|166216586|sp|A6WSV9|ORN_SHEB8 RecName: Full=Oligoribonuclease
 gi|125996005|gb|ABN60080.1| Exonuclease, RNase T and DNA polymerase III [Shewanella baltica
           OS155]
 gi|151366898|gb|ABS09898.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS185]
 gi|160862526|gb|ABX51060.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS195]
 gi|304350805|gb|EFM15206.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS183]
 gi|306912323|gb|EFN42747.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           BA175]
 gi|315269207|gb|ADT96060.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS678]
          Length = 181

 Score = 40.2 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 15/136 (11%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLH-- 63
            D+E TGL+   DRIIEI  +        +         Q               K H  
Sbjct: 11  IDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQS--DDVLAAMDDWNQKHHGE 68

Query: 64  -GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRINKDPL 118
            G+ D     + + +   ++   F  +      +    ++   D  F+N  ++ +     
Sbjct: 69  SGLIDRVRASQETEAQAVAKTIAFLEQYVPKGASPMCGNSIGQDRRFLNRYMRELEDYFH 128

Query: 119 DPSRIIDTLSIARRKH 134
             +  + T+    ++ 
Sbjct: 129 YRNVDVSTIKELVKRW 144


>gi|332994645|gb|AEF04700.1| oligoribonuclease [Alteromonas sp. SN2]
          Length = 181

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 54/174 (31%), Gaps = 23/174 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVE---LLDYSKTNRTFQVFLCPNGR--KNS 56
           + K+    +  D+E TGLD +   ++EI  +     L+         V   P+       
Sbjct: 1   MTKHDSNLVWIDMEMTGLDPETCVVMEIATIVTDAQLNVLAEGPVIAVH-QPDDVLDNMD 59

Query: 57  PEALKLH---GITDEFLKDKPSFSSIFSE----FWDFFNEQNAEWIAHNAKFDVGFINAE 109
               ++H   G+T        + +    +      D+ +   +    +    D  F+   
Sbjct: 60  EWCTRVHGETGLTARCRASSVNEAEAARQTMAFLSDYVDAGKSPLCGNTIGQDRRFMVKY 119

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  +  +     R ID  S+           L+            +  H AL D
Sbjct: 120 MPEL--EDYFHYRSIDVSSVKELIKRWKPEVLD--------GFDKKGVHLALDD 163


>gi|326427305|gb|EGD72875.1| hypothetical protein PTSG_12192 [Salpingoeca sp. ATCC 50818]
          Length = 1063

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 21/166 (12%)

Query: 8   RKIVFD---IETTGLDSKNDRIIEIGAVELLDYS---KTNRTFQVFLCPNGRKNSPEALK 61
           R I  D   +ETT   +   R+  +        +   +       ++ P G   +     
Sbjct: 599 RLIGMDCEMVETTVSPNAVARVTIVAHGYTKSGTFPAEPVVLLDEYIKPPG-DVTDFRTD 657

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           + G+T E L +  +   +    ++  +  +   + H+  FD+  ++          +   
Sbjct: 658 ISGVTQENLDNALTLEQVQQHIFEVVHT-DTVLVGHSLNFDLEALH----------IRHP 706

Query: 122 RIIDTLSIARRK-HPSSRNDLNSLCKR-YGITI-SHRSKHGALLDS 164
            +IDT  + R    P+    L  +  R            H  +LD+
Sbjct: 707 HVIDTSFLFRVASMPTRIFALKDIVDRVLDCECQPLGQAHNCILDA 752


>gi|24216324|ref|NP_713805.1| DNA polymerase I [Leptospira interrogans serovar Lai str. 56601]
 gi|24197598|gb|AAN50823.1|AE011518_2 DNA polymerase I [Leptospira interrogans serovar Lai str. 56601]
          Length = 917

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 33/147 (22%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K R +  D ETT  +     ++ I      +  KT   F V +  N      ++L L   
Sbjct: 338 KSRVLSVDTETTSPNPAMAELVGIS---FSNQEKTG--FYVSVKNNASLFQDKSLNL--- 389

Query: 66  TDEFLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                           E  +            +  N K+D+  +       N   +  + 
Sbjct: 390 ---------------DEVREHLGPVLSSQVPKVGQNIKYDLIVLE------NHGFVLNNI 428

Query: 123 IIDTLSIARRKHPSS-RNDLNSLCKRY 148
             DT+  +    P   R++++ L K +
Sbjct: 429 QFDTMLASYVLRPEGRRHNMDDLAKEF 455


>gi|124266340|ref|YP_001020344.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
 gi|124259115|gb|ABM94109.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
          Length = 937

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 40/139 (28%), Gaps = 26/139 (18%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET  LD    RI+ +                  + P      P A   H  T   
Sbjct: 362 VALDTETDSLDGMRARIVGL---------------SFSVQPYEACYIPLA---H--TYPG 401

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
             D+     + +    +  + +   +  N K+D           N        + DTL  
Sbjct: 402 APDQLPLDEVLAALKSWLEDGSRAKLGQNVKYDTHVF------ANHGIAVRGYVHDTLLQ 455

Query: 130 ARRKHPSSRNDLNSLCKRY 148
           +        + L SL  R+
Sbjct: 456 SYVLEAHKPHSLESLASRH 474


>gi|260792501|ref|XP_002591253.1| hypothetical protein BRAFLDRAFT_216415 [Branchiostoma floridae]
 gi|229276457|gb|EEN47264.1| hypothetical protein BRAFLDRAFT_216415 [Branchiostoma floridae]
          Length = 159

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 18/167 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA-----VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           +  D E  G   +      IGA     +           +  ++ P  +  +       G
Sbjct: 2   LAMDCEMVGCGPRG----SIGALARCSIVNHSGRIV---YDKYIKPQ-QPITDYRTPWSG 53

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I    +     F+    +       QN   + H    D   +     R           +
Sbjct: 54  IRPAHMVQAIPFTQAQEKVRTVL--QNKIVVGHAVYNDFKALGFGHPREMTRDTSRYPAL 111

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
           + L     + P S   L+      G TI  R  H ++ D+    D+Y
Sbjct: 112 NLLGGFPARSPVSLKRLS--RSLLGRTIQQRG-HSSVEDARATMDLY 155


>gi|212527734|ref|XP_002144024.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
 gi|210073422|gb|EEA27509.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
          Length = 678

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 59/197 (29%), Gaps = 29/197 (14%)

Query: 67  DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-------- 116
           DE  +DK   +  +   E+      +N   + H    D+ ++ A    +           
Sbjct: 459 DEANRDKRTVTIETAIEEYK--LRPRNVVLVGHGLHADIKYLGALGCNLFSGNAQSQKTS 516

Query: 117 ---------PLDPSRIIDTLSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLD 163
                    P   S  +DTL  A       R      L ++    GI   H   H A  D
Sbjct: 517 QVSVTEPSTPTAQSLFLDTLDTATMFQALKRDVHVRGLENVLASLGILSWH--LHNAGND 574

Query: 164 SHLLSDVYIKMMVGGSQ-INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
           +    +  I+M++     ++         +     + V N           T + +   +
Sbjct: 575 ARYTLEAMIRMIINARAVLDKAPHELSGNYIDWAVRPVSNSDTTVHKLAWQTEVDRRVSE 634

Query: 223 EHDKTIQTLGKNA-IWD 238
                 + +  +  IW+
Sbjct: 635 AAADQEEQIRDDCKIWE 651


>gi|91070002|gb|ABE10928.1| DNA polymerase I [uncultured Prochlorococcus marinus clone
           ASNC3046]
          Length = 976

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 24/147 (16%)

Query: 3   RKNKMRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +K  +IV  D ET  L+  N  ++ IG     +         +F  P G +       
Sbjct: 375 RLDKTNQIVSLDTETNSLNPINAELVGIGLCLGEEND------DLFYIPLGHQ------- 421

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
               T +   ++ S   +FS+  ++  +   E    N+KFD          +        
Sbjct: 422 ----TKKGTSNQLSIEDVFSKLRNWIEDPKKEKALQNSKFDRQIFFNHGLDLKGVTF--- 474

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY 148
              DTL      +   ++ L+ +  R 
Sbjct: 475 ---DTLLADYLLNNQEKHGLSEISFRL 498


>gi|10433998|dbj|BAB14091.1| unnamed protein product [Homo sapiens]
 gi|15680129|gb|AAH14407.1| AEN protein [Homo sapiens]
          Length = 209

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 41/140 (29%), Gaps = 11/140 (7%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
           +  ++ P     +    +  GIT + ++    F     E       +    + H    D 
Sbjct: 27  YDKYIRPE-MPIADYRTRWSGITRQHMRKAVPFQVAQKEILKLL--KGKVVVGHALHNDF 83

Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGA 160
             +     R             +       H  +R  L  L  +     I +     H +
Sbjct: 84  QALKYVHPRSQTRDTTYVPNFLSEPG---LHTRARVSLKDLALQLLHKKIQVGQHG-HSS 139

Query: 161 LLDSHLLSDVYIKMMVGGSQ 180
           + D+    ++Y +++    +
Sbjct: 140 VEDATTAMELY-RLVEVQWE 158


>gi|219120153|ref|XP_002180821.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407537|gb|EEC47473.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1448

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 17/152 (11%)

Query: 44   FQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHN 98
            F  ++ P          +  GI +  L  K S   +      +       E+   ++ H 
Sbjct: 1290 FDDYVLP-IEPVVDYLSRFSGIVENDLHPKHSPHHLIGTRAAYLKLRCLVERGCIFVGHG 1348

Query: 99   AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSK 157
               D  F  A L       +  ++IIDT+ I  +  P+ R   L  L          +  
Sbjct: 1349 LSGD--FWTANLA------VPENQIIDTVEIYHK--PAHRYVSLRFLTNFVLKRDMQQDV 1398

Query: 158  HGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
            H +L D+    ++Y   +    Q  F    ++
Sbjct: 1399 HDSLEDARAAMELYQTSIALKQQGKFDMLLDD 1430


>gi|190574880|ref|YP_001972725.1| oligoribonuclease [Stenotrophomonas maltophilia K279a]
 gi|190012802|emb|CAQ46431.1| putative oligoribonuclease [Stenotrophomonas maltophilia K279a]
          Length = 190

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 62/173 (35%), Gaps = 29/173 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVE---LLDYSKTNRTFQVF-----------LCPNGR 53
           R I  D+E TGLD+ ND IIEI  V     L+       F +               N  
Sbjct: 10  RLIWIDLEMTGLDTDNDSIIEIATVVTDAQLNVLAEGPEFAIHHPLETLEAMDEWNRNQH 69

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           + S    ++ G T        + +   +    +     +    ++   D  F++ ++ R+
Sbjct: 70  RRSGLWQRVVGSTTTL---GQAEAQTVNFLAQWIPAGLSPMCGNSICQDRRFLHRQMPRL 126

Query: 114 NKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
            K     +  + T+  +A+R  PS            G+     S H AL D H
Sbjct: 127 EKYFHYRNLDVSTVKELAKRWAPSV---------AAGV--GKNSNHTALSDVH 168


>gi|91217029|ref|ZP_01253992.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
 gi|91184900|gb|EAS71280.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
          Length = 942

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 32/143 (22%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K   + FD ETT L + +  ++ I             +++                  G 
Sbjct: 367 KQNSVCFDTETTSLKTLDAELVGIAF-----------SWESH---------------KGF 400

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
              F +D+     +  +   FF     E +  N K+D+  +     ++           D
Sbjct: 401 YVAFPEDQNEAQELVEKLRPFFESTEIEKVGQNLKYDIKVLANYKLKVKGPLF------D 454

Query: 126 TLSIARRKHPSSRNDLNSLCKRY 148
           T+      +P  R+++N L + Y
Sbjct: 455 TMLAHYIINPDMRHNMNILAETY 477


>gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
          Length = 930

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 30/157 (19%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +  K + I FD ETT L+  +  ++  G    ++  +       ++ P          +L
Sbjct: 346 KLQKAQLIAFDTETTSLNYMDAELV--GVSFCIEEGE-----AAYV-PVAHDYPDAPTQL 397

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
              + EF+ D            +     N   +  + K+D   +       N D      
Sbjct: 398 ---SREFVLDA------LKPILE---SSNIIKVGQHIKYDKNVL------ANYDITLNGI 439

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKH 158
             DT+  +   + +  R+D++SL   Y   + H++ H
Sbjct: 440 GFDTMLESYVLNSTAQRHDMDSLALAY---LGHKTIH 473


>gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 963

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 86/257 (33%), Gaps = 63/257 (24%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R  K      D ET GLD+K   +I I  AV              +L P G        +
Sbjct: 373 RLKKASLFAIDTETDGLDTKTAHLIGISFAVAPGKA--------AYL-PLGHDYPEAPAQ 423

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           L+       +DK     + + F     +  A  +  N KFD   +     ++        
Sbjct: 424 LN-------RDK-----VLALFKPLLEDPQALKVGQNLKFDQSLLANYGIKLQGIAF--- 468

Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRY----------------------GITISHRSKH 158
              DT+  +   +  + R+D++SL +R+                       I +   + +
Sbjct: 469 ---DTMLESYVFNSVAGRHDMDSLSERHLNHKTLSFEDIAGKGKNQLTFNQIPLEQAAIY 525

Query: 159 GALLDSHLLSDVYIK----------MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
            A  D+ +   +++           +M    +I     +   R  +      P+I LL  
Sbjct: 526 -AAEDADVTLRLHLALWPKLKENPDLMKVLQEIEMPLLSVLSRMERTGVMIDPDI-LLNH 583

Query: 209 DKPLFTRITKEELDEHD 225
            K L  R+T+ E   HD
Sbjct: 584 SKELQLRLTELEKKAHD 600


>gi|227113804|ref|ZP_03827460.1| oligoribonuclease [Pectobacterium carotovorum subsp. brasiliensis
          PBR1692]
 gi|227326226|ref|ZP_03830250.1| oligoribonuclease [Pectobacterium carotovorum subsp. carotovorum
          WPP14]
          Length = 180

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          M+ +N +  I  D+E TGL+  +DRIIEI 
Sbjct: 1  MVDENNL--IWIDLEMTGLNPDHDRIIEIA 28


>gi|172041585|ref|YP_001801299.1| DNA polymerase III subunit epsilon [Corynebacterium urealyticum DSM
           7109]
 gi|171852889|emb|CAQ05865.1| DNA polymerase III, epsilon subunit [Corynebacterium urealyticum
           DSM 7109]
          Length = 606

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 37/173 (21%)

Query: 16  TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPS 75
           T+G+     R+I + AV           F   L P+     P    +HG     L  +  
Sbjct: 123 TSGIHPTTARLIALAAVYYDADGAEAGHFVQALNPSE---DPGPWHMHGFDAGELAQQIG 179

Query: 76  FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-------------------- 115
           F++  +E     + +      H+A    GFI  E +R  +                    
Sbjct: 180 FATAAAEIKAALDGREVIL--HDAPLAWGFITHEFRRAQRAANRGRGRGRSGRGRGRGRS 237

Query: 116 ---DPLDPSRIIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
                 +P+ +IDTL+  RR + P+      ++ + Y         H A  D+
Sbjct: 238 KAIPTPEPAVLIDTLATTRRQEMPAVDPRARAVAQLY--------PHNAPADA 282


>gi|257088833|ref|ZP_05583194.1| DNA polymerase [Enterococcus faecalis CH188]
 gi|256997645|gb|EEU84165.1| DNA polymerase [Enterococcus faecalis CH188]
 gi|315160597|gb|EFU04614.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645]
 gi|315579443|gb|EFU91634.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630]
          Length = 653

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 25/146 (17%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGI 65
           M+ +  DIET      ++ + ++G  +  D       F++ L        P E   L   
Sbjct: 1   MKTLNIDIET----YSDEDLTKVGVYKYADSP----NFEILLFAYSVDGQPVECEDLT-- 50

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                      S I  E      ++N   IA NA+F+   ++  L       LDP++   
Sbjct: 51  ----------ISEIPDEIVAALTDKNVLKIAFNAQFERVCLSKYLGVPYY--LDPAQWHC 98

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGIT 151
           T+  A          L    K   I 
Sbjct: 99  TMVHANEL--GLPASLGQCAKYLNIE 122


>gi|45656484|ref|YP_000570.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45599719|gb|AAS69207.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 917

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 33/147 (22%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K R +  D ETT  +     ++ I      +  KT   F V +  N      ++L L   
Sbjct: 338 KSRVLSVDTETTSPNPAMAELVGIS---FSNQEKTG--FYVSVKNNASLFQDKSLNL--- 389

Query: 66  TDEFLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                           E  +            +  N K+D+  +       N   +  + 
Sbjct: 390 ---------------DEVREHLGPVLSSQVPKVGQNIKYDLIVLE------NHGFVLNNI 428

Query: 123 IIDTLSIARRKHPSS-RNDLNSLCKRY 148
             DT+  +    P   R++++ L K +
Sbjct: 429 QFDTMLASYVLRPEGRRHNMDDLAKEF 455


>gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
 gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
          Length = 923

 Score = 40.2 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG D     ++ +      +        Q F  P                     
Sbjct: 355 LDTETTGTDPIRAELVGMSFAYAEN--------QAFYVPVP------------------A 388

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D+     I  +F   F       +  N K+D+  +       N        + DT+    
Sbjct: 389 DRTEAQRIVDKFKPVFENPQTLKVGQNIKYDMLVL------ANYGVEIQGPMFDTMIAHY 442

Query: 132 RKHPSSRNDLNSLCKRY 148
              P   + ++ L + Y
Sbjct: 443 VLQPELHHGMDYLAEIY 459


>gi|302849875|ref|XP_002956466.1| hypothetical protein VOLCADRAFT_67017 [Volvox carteri f.
           nagariensis]
 gi|300258164|gb|EFJ42403.1| hypothetical protein VOLCADRAFT_67017 [Volvox carteri f.
           nagariensis]
          Length = 162

 Score = 40.2 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 15/136 (11%)

Query: 45  QVFLCPNGRKNSPEALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
              + P+         +  GIT + L+        +   F    + +    + H  + D+
Sbjct: 33  DELVLPHN-PILDYNTRYSGITSKMLEGCTNRLEDVRERFLTLVSSE-CLLVGHALENDL 90

Query: 104 GFINAELQRINKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
             +     RI          +DT +     K P  ++ L  L +R+         H + +
Sbjct: 91  AALRTCHGRI----------LDTAVLFPHPKGPPFKSALKILARRFLRRTIQDGAHDSAV 140

Query: 163 DSHLLSDV-YIKMMVG 177
           D+    D+  +K+  G
Sbjct: 141 DARTALDLALLKIKHG 156


>gi|262273022|ref|ZP_06050841.1| oligoribonuclease [Grimontia hollisae CIP 101886]
 gi|262222932|gb|EEY74238.1| oligoribonuclease [Grimontia hollisae CIP 101886]
          Length = 181

 Score = 40.2 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 56/176 (31%), Gaps = 27/176 (15%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV------ELLDYSKTNRTFQVFLCPNGRKN 55
           +  +    I  D+E TGLD +  ++IEI  +      ++L         Q        K 
Sbjct: 1   MSFSDKNLIWIDLEMTGLDPEVHKVIEIATIVTDAELKVLAEGPVLAIHQS--DEELAKM 58

Query: 56  SPEALKLH---GITDEFLK-----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107
                K H   G+  E +K     +  +     +   ++     +    ++   D  F+ 
Sbjct: 59  DEWCTKTHTRSGLV-ERVKESTINEAQAVKETIAFLQEWVPAGVSPICGNSVGQDRRFLY 117

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             +  + +      R +D  +I         + L+            +  H AL D
Sbjct: 118 KHMPDLER--FFHYRTVDVSTIKELVRRWQPDVLS--------GFKKQGAHLALDD 163


>gi|71907267|ref|YP_284854.1| hypothetical protein Daro_1636 [Dechloromonas aromatica RCB]
 gi|71846888|gb|AAZ46384.1| hypothetical protein Daro_1636 [Dechloromonas aromatica RCB]
          Length = 221

 Score = 40.2 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 65/190 (34%), Gaps = 30/190 (15%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R IV DI ++GL   +D+++ I A        + + TF  ++  +       A+      
Sbjct: 44  RYIVVDIVSSGLQPDSDQLLSIAASSVWQGAIQPDDTF--YIDFSTLDGEGAAVD----- 96

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIID 125
                                    A  + ++  +  GF+    + R+  D     + +D
Sbjct: 97  -------------RQLAAFLLFAAKAPLVTYHVPYVGGFLQRAFKERLGVDF--QPQWVD 141

Query: 126 TLSIARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG--GSQ 180
              +         +    L+     +G+      +  A+ ++ L+  ++  ++V   G Q
Sbjct: 142 LAWLLPSMFEEKGHTVMPLDHWIDVFGLDSGSGRR-DAMANTLLIGRIFQMLLVRAVGKQ 200

Query: 181 INFGFKTNED 190
           I+      ++
Sbjct: 201 IDTAKHLVDE 210


>gi|281416455|ref|YP_003347375.1| DNA polymerase [Enterococcus phage phiFL4A]
 gi|270209631|gb|ACZ64170.1| DNA polymerase [Enterococcus phage phiFL4A]
          Length = 653

 Score = 40.2 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 25/146 (17%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGI 65
           M+ +  DIET      ++ + ++G  +  D       F++ L        P E   L   
Sbjct: 1   MKTLNIDIET----YSDEDLTKVGVYKYADSP----NFEILLFAYSVDGQPVECEDLT-- 50

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                      S I  E      ++N   IA NA+F+   ++  L       LDP++   
Sbjct: 51  ----------ISEIPDEIVAALTDKNVLKIAFNAQFERVCLSKYLGVPYY--LDPAQWHC 98

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGIT 151
           T+  A          L    K   I 
Sbjct: 99  TMVHANEL--GLPASLGQCAKYLNIE 122


>gi|159489154|ref|XP_001702562.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280584|gb|EDP06341.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 180

 Score = 40.2 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 63/171 (36%), Gaps = 36/171 (21%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---------KL 62
            D+E TGLD + D IIE+  +  +   +  R+ Q    P    +  +A+         + 
Sbjct: 4   VDLEMTGLDIEKDTIIEMACI--ITDGELERSVQ---GPATAIHHSDAVLEGMNDWCKEH 58

Query: 63  HGIT--DEFLKD-KPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAELQRINK 115
           HG +   + ++D +    +      DF  E      A+   ++   D  F+   + R+  
Sbjct: 59  HGASGLTQRVRDSRVDMGAAEQMLLDFIAEHTEEGMAQLAGNSVHVDRIFLLKHMPRV-- 116

Query: 116 DPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                 RI+D  SI   ARR  P          K Y         H AL D
Sbjct: 117 VAHLNYRIVDVSSIKELARRWFP----------KTYRKAPRKTLAHTALSD 157


>gi|300689883|ref|YP_003750878.1| hypothetical protein RPSI07_0178 [Ralstonia solanacearum PSI07]
 gi|299076943|emb|CBJ49556.1| conserved protein of unknown function [Ralstonia solanacearum
           PSI07]
          Length = 231

 Score = 40.2 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 23/183 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ----VFLCPNGRKNS-------P 57
            +  DIE  G       ++   +   L       TF+          G           P
Sbjct: 36  YVSTDIEADGPIPGPHSMLSFASAAYLADKTLVGTFEANLETLPGAEGHPIQMQWWAQQP 95

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRI-N 114
           EA           ++  +  +    + ++         ++A  A FD  F+   + R   
Sbjct: 96  EAWA------ACRRNLETPEAALPRYVEWVESLPGKPVFVAFPAGFDFTFMFWYMMRFAG 149

Query: 115 KDPLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           + P   +   I TL+ A    P  RN   +   ++   + H   H AL D+     ++  
Sbjct: 150 RSPFGWAALDIKTLAFALTGLPYRRNVKAAFPAQWHDPLPH--THIALDDAKEQGALFCN 207

Query: 174 MMV 176
           M+ 
Sbjct: 208 MLA 210


>gi|119587653|gb|EAW67249.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_a
           [Homo sapiens]
          Length = 179

 Score = 40.2 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 11/132 (8%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLH 63
            R +  D+E TGLD + D+IIE+   +   D +       + +          +   K H
Sbjct: 41  QRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEH 100

Query: 64  ----GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRINK 115
               G+T    +   +      EF  F  +Q          ++   D  F++  + +  K
Sbjct: 101 HGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMK 160

Query: 116 DPLDPSRIIDTL 127
                   + T+
Sbjct: 161 HLHYRIIDVSTV 172


>gi|73958726|ref|XP_861741.1| PREDICTED: similar to exonuclease NEF-sp isoform 5 [Canis
           familiaris]
          Length = 744

 Score = 40.2 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 54/175 (30%), Gaps = 25/175 (14%)

Query: 45  QVFLCPNGRKNSPEALKLHGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKF 101
              + P+ +          GIT + L   P       +  +        +A  + H+   
Sbjct: 260 DELVKPDNKILDYL-TSFSGITKKIL--NPVTTRLKDVQRQLKSLL-PPDAVLVGHSLDL 315

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR-YG--ITISHRSKH 158
           D+  +                +IDT S+   +    R  L  L K   G  I   +R  H
Sbjct: 316 DLRALKMI----------HPYVIDT-SLLYVREQGRRFKLKFLAKAILGKDIQCPNRLGH 364

Query: 159 GALLDSHLLSDVYIKMMVGG----SQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
            A  D+    ++    +  G    +++N     +        ++      ++++ 
Sbjct: 365 DATEDARTTLELARYFLKYGPRKIAELNLEALASHQELLATGQELRNTAEVVQQP 419


>gi|73958718|ref|XP_536947.2| PREDICTED: similar to exonuclease NEF-sp isoform 1 [Canis
           familiaris]
 gi|73958720|ref|XP_861651.1| PREDICTED: similar to exonuclease NEF-sp isoform 2 [Canis
           familiaris]
          Length = 775

 Score = 40.2 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 54/175 (30%), Gaps = 25/175 (14%)

Query: 45  QVFLCPNGRKNSPEALKLHGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKF 101
              + P+ +          GIT + L   P       +  +        +A  + H+   
Sbjct: 260 DELVKPDNKILDYL-TSFSGITKKIL--NPVTTRLKDVQRQLKSLL-PPDAVLVGHSLDL 315

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR-YG--ITISHRSKH 158
           D+  +                +IDT S+   +    R  L  L K   G  I   +R  H
Sbjct: 316 DLRALKMI----------HPYVIDT-SLLYVREQGRRFKLKFLAKAILGKDIQCPNRLGH 364

Query: 159 GALLDSHLLSDVYIKMMVGG----SQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
            A  D+    ++    +  G    +++N     +        ++      ++++ 
Sbjct: 365 DATEDARTTLELARYFLKYGPRKIAELNLEALASHQELLATGQELRNTAEVVQQP 419


>gi|66811008|ref|XP_639211.1| hypothetical protein DDB_G0283189 [Dictyostelium discoideum AX4]
 gi|74854710|sp|Q54RD4|DPOE1_DICDI RecName: Full=DNA polymerase epsilon catalytic subunit A; AltName:
           Full=DNA polymerase II subunit A
 gi|60467818|gb|EAL65833.1| hypothetical protein DDB_G0283189 [Dictyostelium discoideum AX4]
          Length = 2380

 Score = 40.2 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 32/166 (19%)

Query: 8   RKIVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEAL 60
           + + +DIETT L     DS  D I+ I   ++   Y   NR      +        PE  
Sbjct: 268 KVLAYDIETTKLPLKFPDSSIDSIMMISYMLDKQGYLIVNREIVSEDIKDFEYTPKPEYY 327

Query: 61  -KLHGITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHN-AKFDVGFINAELQRINKDP 117
                     + ++P   S+   F+     E+   ++++N   FD  F+ +  +      
Sbjct: 328 GPFT------VFNEPDEKSVLERFFSEIKREKPHIFVSYNGDMFDWPFVESRAEYHGLSM 381

Query: 118 LDP--------------SRIIDTLSIARR--KHPSSRNDLNSLCKR 147
                            +  +D     +R    P   + L ++ + 
Sbjct: 382 FHQIGFRNDNGEYRSKINPHMDAFCWVKRDSYLPHGSHGLKAVTRE 427


>gi|326929463|ref|XP_003210883.1| PREDICTED: putative RNA exonuclease NEF-sp-like [Meleagris
           gallopavo]
          Length = 780

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 25/169 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL- 70
            D E   L +K + +  +  V+       N      + P     +    +  G+T + L 
Sbjct: 232 LDCEMC-LTAKGNEVTRVSLVDAEGQCLLNE----LVKPESVIVN-YCTRYSGVTRKMLL 285

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             K     I +         +A  + H+   D+  +           + PS I  +L  A
Sbjct: 286 PVKTRLPDIQTRLKKIL-PHDAVLVGHSLNADLRALQM---------IHPSVIDTSLLFA 335

Query: 131 RRKHPSSRNDLNSLCKR-YG--ITISHRSKHGALLDSHL---LSDVYIK 173
           R +    R  L  L K   G  I    R  H    D+     L+  +IK
Sbjct: 336 RNE--GRRFKLKFLAKAVLGKEIQCEQRLGHDPAEDARAALELAQFFIK 382


>gi|288869774|ref|ZP_05976253.2| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
 gi|288860454|gb|EFC92752.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
          Length = 351

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 31/135 (22%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             DIET GL +    +I IG  E+ +   T+  +                        FL
Sbjct: 180 FMDIETLGLSNVP--VILIGVAEIKNNKITSSQY------------------------FL 213

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +D     ++   +    ++ ++  +  N   FDV FI         +P      +D L  
Sbjct: 214 RDIYEEPAVLEAYLSHLDD-DSIHVTFNGSMFDVPFIKNRCSYYRMNPQLDLPHLDLLYF 272

Query: 130 ARRKHPSSRNDLNSL 144
           AR      +N L + 
Sbjct: 273 ARNLW---KNTLPNC 284


>gi|222444624|ref|ZP_03607139.1| hypothetical protein METSMIALI_00236 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434189|gb|EEE41354.1| hypothetical protein METSMIALI_00236 [Methanobrevibacter smithii
           DSM 2375]
          Length = 351

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 31/135 (22%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             DIET GL +    +I IG  E+ +   T+  +                        FL
Sbjct: 180 FMDIETLGLSNVP--VILIGVAEIKNNKITSSQY------------------------FL 213

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +D     ++   +    ++ ++  +  N   FDV FI         +P      +D L  
Sbjct: 214 RDIYEEPAVLEAYLSHLDD-DSIHVTFNGSMFDVPFIKNRCSYYRMNPQLDLPHLDLLYF 272

Query: 130 ARRKHPSSRNDLNSL 144
           AR      +N L + 
Sbjct: 273 ARNLW---KNTLPNC 284


>gi|152978666|ref|YP_001344295.1| oligoribonuclease [Actinobacillus succinogenes 130Z]
 gi|171704275|sp|A6VN13|ORN_ACTSZ RecName: Full=Oligoribonuclease
 gi|150840389|gb|ABR74360.1| Exonuclease RNase T and DNA polymerase III [Actinobacillus
          succinogenes 130Z]
          Length = 182

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          + ++K   I  D+E TGLD + +RIIEI  +        
Sbjct: 1  MAQDKENLIWIDLEMTGLDPEQERIIEIATIVTDKNLNI 39


>gi|254525014|ref|ZP_05137069.1| oligoribonuclease [Stenotrophomonas sp. SKA14]
 gi|219722605|gb|EED41130.1| oligoribonuclease [Stenotrophomonas sp. SKA14]
          Length = 190

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 67/182 (36%), Gaps = 47/182 (25%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSP----EALKL 62
           R I  D+E TGLD+ ND IIEI  V       T+    V    P    + P    EA+  
Sbjct: 10  RLIWIDLEMTGLDTDNDSIIEIATV------VTDAQLNVLAEGPEFAIHHPVETLEAM-- 61

Query: 63  HGITDEFLKDKPSFSSIFSEFWD------------------FFNEQNAEWIAHNAKFDVG 104
               DE+ +++   S ++    D                  +     +    ++   D  
Sbjct: 62  ----DEWNRNQHRRSGLWQRVVDSTTTLGQAEAQTVNFLAQWIPAGLSPMCGNSICQDRR 117

Query: 105 FINAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           F++ ++ R+ K     +  + T+  +A+R  P       ++       +   S H AL D
Sbjct: 118 FLHRQMPRLEKYFHYRNLDVSTVKELAKRWAP-------TVAA----GVGKNSNHTALSD 166

Query: 164 SH 165
            H
Sbjct: 167 VH 168


>gi|149192489|ref|ZP_01870676.1| oligoribonuclease [Vibrio shilonii AK1]
 gi|148833680|gb|EDL50730.1| oligoribonuclease [Vibrio shilonii AK1]
          Length = 181

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 49/187 (26%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  +    I  D+E TGLD +  +IIEI ++            ++ +   G         
Sbjct: 1   MSFSDDNLIWVDLEMTGLDPEQHKIIEIASIVTD--------SELNILAEGPVI-----A 47

Query: 62  LHGITDEFLK-------------------------DKPSFSSIFSEFWDFFNEQNAEWIA 96
           +H  +DE L                          +  +     +    +  +  +    
Sbjct: 48  IHQ-SDEELAKMDDWCTNTHTASGLVARVKDSEYDEAEAIKQTITFLEQWVPKGKSPICG 106

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
           ++   D  F+   +  + +        + TL    R+       L+          S + 
Sbjct: 107 NSIGQDRRFLYKHMPELEEYFHYRYVDVSTLKELTRRWKPE--VLD--------GFSKQG 156

Query: 157 KHGALLD 163
            H AL D
Sbjct: 157 THLALDD 163


>gi|148642198|ref|YP_001272711.1| exonuclease [Methanobrevibacter smithii ATCC 35061]
 gi|148551215|gb|ABQ86343.1| predicted exonuclease [Methanobrevibacter smithii ATCC 35061]
          Length = 351

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 31/135 (22%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             DIET GL +    +I IG  E+ +   T+  +                        FL
Sbjct: 180 FMDIETLGLSNVP--VILIGVAEIKNNKITSSQY------------------------FL 213

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +D     ++   +    ++ ++  +  N   FDV FI         +P      +D L  
Sbjct: 214 RDIYEEPAVLEAYLSHLDD-DSIHVTFNGSMFDVPFIKNRCSYYRMNPQLDLPHLDLLYF 272

Query: 130 ARRKHPSSRNDLNSL 144
           AR      +N L + 
Sbjct: 273 ARNLW---KNTLPNC 284


>gi|134111855|ref|XP_775463.1| hypothetical protein CNBE1780 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258122|gb|EAL20816.1| hypothetical protein CNBE1780 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 612

 Score = 40.2 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 17/100 (17%)

Query: 9   KIVFDIETTGLDSKN-DRIIEIGA-----VELLDYSKTNRT----------FQVFLCPNG 52
            + FD+E T    K  D   EI A     V L+ + + N            F+ ++ P  
Sbjct: 184 FLCFDVEATCRGGKEFDYPNEIIASPEFPVVLVRWGEPNEEGKRVLEKIDSFRSYVRPTW 243

Query: 53  RKNSPEALK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
           R    +  K L GI  E +   P F  +  +   + ++ +
Sbjct: 244 RPILTDFCKSLTGIQQETVDKSPIFPEVLKQLEGWLDKWD 283


>gi|195392333|ref|XP_002054812.1| GJ24646 [Drosophila virilis]
 gi|194152898|gb|EDW68332.1| GJ24646 [Drosophila virilis]
          Length = 187

 Score = 40.2 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 28/166 (16%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK------LHGIT 66
           D+E TGL    D+I+E+  +              F      ++ P+         +    
Sbjct: 18  DLEMTGLSIDKDQILEVACIITDKQLNIKAECLCF----AIRHPPQVYNNMNEWCIKHHN 73

Query: 67  DEFLKDKPSFSSIFSEFWD---------FFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +  L DK   S +  E  +         +  E+      ++   D  FI      +  D 
Sbjct: 74  ESGLIDKCKESDVTPELAENIILSFLKQYIPEKKCPLAGNSIYMDRLFIRKFYPAV--DE 131

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
               RIID  ++           + +  ++       +  H +L D
Sbjct: 132 YLHYRIIDVSTVKELATRWHPRVIQAAAQK-------KLAHRSLDD 170


>gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 929

 Score = 40.2 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 32/142 (22%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            ++I FD ETT L+    +I+ +     +            L P     + +        
Sbjct: 355 QKEICFDTETTSLNEMEAQIVGLALSYEIHKG------YYILFPEDFSLAKQ-------- 400

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             FL  KP F +                I  N K+D   +      +  +        DT
Sbjct: 401 -WFLLLKPFFEN--ESILK---------IGQNLKYDFKILANYGIEVKGEFF------DT 442

Query: 127 LSIARRKHPSSRNDLNSLCKRY 148
           +      +P  R++++ L + Y
Sbjct: 443 MIAHYLLNPDMRHNMDLLSEAY 464


>gi|260943289|ref|XP_002615943.1| hypothetical protein CLUG_04825 [Clavispora lusitaniae ATCC 42720]
 gi|238851233|gb|EEQ40697.1| hypothetical protein CLUG_04825 [Clavispora lusitaniae ATCC 42720]
          Length = 526

 Score = 40.2 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 61/174 (35%), Gaps = 25/174 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
            RK  +  +  D E  G  S+   ++ I A++          F + + P G        +
Sbjct: 356 TRKGSLEAVGIDCEM-GFTSQGFELLRITAIDFFSGE---EAFDILVKPKGEVLDLN-TR 410

Query: 62  LHG---ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
             G   I +E L    SF    +   +  +  N   I H  + D+  +           L
Sbjct: 411 WSGVAEIKEEAL----SFEDSMALLGEVIDA-NTVMIGHGLENDMNAMR----------L 455

Query: 119 DPSRIIDT--LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             ++I+DT  L    +  P+ R  L  L  +Y        +H +  DS    DV
Sbjct: 456 IHTKIVDTAILYPKHKATPTFRYSLKQLAFQYLGRNIQSGQHDSGEDSLAAIDV 509


>gi|328872066|gb|EGG20436.1| putative DNA polymerase epsilon subunit A [Dictyostelium
           fasciculatum]
          Length = 2328

 Score = 40.2 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 35/191 (18%)

Query: 8   RKIVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEAL 60
           R + FDIETT L     +++ D I+ I   V+   +  TNR+     +        PE  
Sbjct: 294 RVLAFDIETTHLPLKFSNAEYDEIMMISYMVDRQGFLITNRSIVSADVGDFEYTPKPEYE 353

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHN-AKFDVGFINAELQRINKDPL 118
                    + ++P+   +  +F+    + +   ++ +N   FD  FI A       D  
Sbjct: 354 G-----PFQVFNEPNERDLLVKFFSHVRQIRPHIFVTYNGDSFDWPFIEARALVHGLDMF 408

Query: 119 --------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK---RYG-ITISHRSKH 158
                           +  +D     +R    P   + L  + +   RY  + I      
Sbjct: 409 REIGVRNKQDEYRGRTAVHMDAFYWVKRDSYLPHGSHRLKEVIRKKLRYNPVEIDAEEMI 468

Query: 159 G-ALLDSHLLS 168
             A  D   L+
Sbjct: 469 TAARDDPETLA 479


>gi|41179402|ref|NP_958711.1| Bbp42 [Bordetella phage BPP-1]
 gi|45569535|ref|NP_996604.1| DNA polymerase [Bordetella phage BMP-1]
 gi|45580786|ref|NP_996652.1| DNA polymerase [Bordetella phage BIP-1]
 gi|40950141|gb|AAR97707.1| Bbp42 [Bordetella phage BPP-1]
          Length = 688

 Score = 40.2 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D  S   +  +      ++N    AHN+ FD   +   +      PL   R  DT+  
Sbjct: 43  VWDAASGEKMPDDLRWALIDENVALCAHNSHFDRTVLRHAMPDY---PLALPRWRDTMVK 99

Query: 130 ARRKHPSSRNDLNSLCKRYGITIS 153
           A     S    L  LC    +   
Sbjct: 100 A--LAHSLPGALGDLCDILKVPTD 121


>gi|288940627|ref|YP_003442867.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum
           DSM 180]
 gi|288895999|gb|ADC61835.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum
           DSM 180]
          Length = 187

 Score = 40.2 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 62/184 (33%), Gaps = 34/184 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEAL 60
           + K++   I  D+E TGLD  +DRI+EI  +       T+   +V    P    +  EA+
Sbjct: 6   MSKSEHNLIWIDLEMTGLDPDHDRILEIATL------ITDSQLRVLAEGPVIAIHQDEAI 59

Query: 61  KLHGITD---EFLKDKPSFSSI--------------FSEFWDFFNEQNAEWIAHNAKFDV 103
            L G+ D   E          +               +   ++     +    ++   D 
Sbjct: 60  -LAGLDDWNREHHGASGLLDRVRVSAQREAEAEAATLAFLAEYVPAGASPLCGNSICQDR 118

Query: 104 GFINAELQRINKDPLDPSRIIDTLSI-ARRKHPSSRNDLNSLCKRYGIT--------ISH 154
            F+   + R+       +  + TL I A+R  P   +      +   +         + H
Sbjct: 119 RFLARWMPRLEAYCHYRNLDVSTLKILAQRWAPEVASGFKKASRHLALDDIRESVDELRH 178

Query: 155 RSKH 158
              H
Sbjct: 179 YRAH 182


>gi|85117960|ref|XP_965348.1| hypothetical protein NCU02961 [Neurospora crassa OR74A]
 gi|28927156|gb|EAA36112.1| conserved hypothetical protein [Neurospora crassa OR74A]
 gi|38566953|emb|CAE76255.1| related to ribonuclease H [Neurospora crassa]
          Length = 716

 Score = 40.2 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 60/200 (30%), Gaps = 28/200 (14%)

Query: 8   RKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           R++   D E          +  I  V        +      + P+ +       +  GIT
Sbjct: 321 REVYALDCEMCMTGEAEYSLTRISLVSWDGSVVLDE----LVKPD-KPIIDYVTRFSGIT 375

Query: 67  DEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            E +     +   I +   D    + +  + H+   D+  +             P  +  
Sbjct: 376 KEMIDPINTTLKDIQARLLDILGPR-SILLGHSLDSDLKAL---------KLAHPFIVDT 425

Query: 126 TLSIARRKHPSSRNDLNSLCKRY--------GITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +L     +    +  L  L +++        G T +    H ++ D+    D+  +    
Sbjct: 426 SLLFPHPRGLPLKQSLKYLAQKFLNREVQKGGGTNAG---HDSIEDAKTCLDLVKRKCEK 482

Query: 178 GSQINFGFKTNEDRFFKEEK 197
           G     G    E+ F +  +
Sbjct: 483 GKAWGAGESQGENLFKRLAR 502


>gi|289614020|emb|CBI59170.1| unnamed protein product [Sordaria macrospora]
          Length = 1071

 Score = 40.2 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 3   RKNKM---RKIVFDIETTGL-----DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
             +KM   R + FDIE  G      + ++D +I+I  +      K  + F   +      
Sbjct: 299 EWSKMAPLRILSFDIECAGRKGIFPEPQHDSVIQIANIVTKYGEK--KPFVRNVFCLDTT 356

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA-EWIAHNAKFDVGFINAELQRI 113
           +S  A ++     E          +  E+ +F  + +    I +N   +  F      R 
Sbjct: 357 SSIVATQILSFDRE--------EDMLREWRNFLEQVDPDIIIGYNIA-NFDFPKQMGNRD 407

Query: 114 NKDPLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
            K      R  +D L + +R +      LN++C  +         H 
Sbjct: 408 TKATNTNGRLQLDMLQLVQRDYQLRSYTLNAVCSNFLGEQKEDVHHS 454


>gi|90108543|pdb|1YTA|A Chain A, Crystal Structure Of Oligoribonuclease, The Lone
          Essential Exoribonuclease In Escherichia Coli
 gi|90108544|pdb|1YTA|B Chain B, Crystal Structure Of Oligoribonuclease, The Lone
          Essential Exoribonuclease In Escherichia Coli
 gi|90108545|pdb|1YTA|C Chain C, Crystal Structure Of Oligoribonuclease, The Lone
          Essential Exoribonuclease In Escherichia Coli
 gi|90108546|pdb|1YTA|D Chain D, Crystal Structure Of Oligoribonuclease, The Lone
          Essential Exoribonuclease In Escherichia Coli
          Length = 180

 Score = 40.2 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 4  KNKMRKIVFDIETTGLDSKNDRIIEIG 30
           N+   I  D+E TGLD + DRIIEI 
Sbjct: 2  ANENNLIWIDLEXTGLDPERDRIIEIA 28


>gi|255655809|ref|ZP_05401218.1| putative exonuclease [Clostridium difficile QCD-23m63]
 gi|296450953|ref|ZP_06892700.1| exonuclease superfamily protein [Clostridium difficile NAP08]
 gi|296879081|ref|ZP_06903077.1| exonuclease superfamily protein [Clostridium difficile NAP07]
 gi|296260171|gb|EFH07019.1| exonuclease superfamily protein [Clostridium difficile NAP08]
 gi|296429954|gb|EFH15805.1| exonuclease superfamily protein [Clostridium difficile NAP07]
          Length = 324

 Score = 40.2 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 67/187 (35%), Gaps = 29/187 (15%)

Query: 7   MRK-IVFDIETTGLDSKND-----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M+  +  D E    +  +D            +I IG V + +   T   +   + P   K
Sbjct: 1   MKYKLFIDFE---FNILDDNKNKPKEYNGTELISIGGVLVDNEFNTIDNYYSLVKPRYNK 57

Query: 55  N-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQ- 111
             S +   L  +    + + P+   +  +F+ +F + +   I +N   FD+  +    + 
Sbjct: 58  ILSNKCKNLTKLNQLDINNAPNLLYVMDDFYKWFCKFDDVTI-YNWGDFDIIGLLTSFRV 116

Query: 112 --------RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                    +    +D    I        +  S +  L ++ K +  ++    KH +L D
Sbjct: 117 YKYTGKCLELFNMMIDIQPFISQHITYNNRILSKQISLLNMKKIF--SVEGDIKHNSLSD 174

Query: 164 SHLLSDV 170
           +  L +V
Sbjct: 175 AMDLMNV 181


>gi|145633650|ref|ZP_01789377.1| oligoribonuclease [Haemophilus influenzae 3655]
 gi|145635428|ref|ZP_01791129.1| oligoribonuclease [Haemophilus influenzae PittAA]
 gi|229845250|ref|ZP_04465383.1| oligoribonuclease [Haemophilus influenzae 6P18H1]
 gi|144985527|gb|EDJ92343.1| oligoribonuclease [Haemophilus influenzae 3655]
 gi|145267302|gb|EDK07305.1| oligoribonuclease [Haemophilus influenzae PittAA]
 gi|229811845|gb|EEP47541.1| oligoribonuclease [Haemophilus influenzae 6P18H1]
          Length = 182

 Score = 40.2 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          +  +K   I  D+E TGL+ + +RIIEI  +        
Sbjct: 1  MPFDKQNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNI 39


>gi|195057931|ref|XP_001995351.1| GH23112 [Drosophila grimshawi]
 gi|193899557|gb|EDV98423.1| GH23112 [Drosophila grimshawi]
          Length = 1242

 Score = 40.2 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 15/103 (14%)

Query: 84   WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN---D 140
              F  +    ++ H  K D   IN          +   +IIDT+           +    
Sbjct: 1131 LKFLVDVGVIFVGHGLKNDFRVINIY--------VPSEQIIDTV----HLFHLPHHRMVS 1178

Query: 141  LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
            L  L   +  T+     H ++ D+     +Y   +   ++  F
Sbjct: 1179 LRFLAWHFLGTMIQSETHDSIEDARTTLQLYKHYLQLQAEKKF 1221


>gi|326484044|gb|EGE08054.1| exonuclease [Trichophyton equinum CBS 127.97]
          Length = 732

 Score = 40.2 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 67/206 (32%), Gaps = 24/206 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D E    +     +  I  V   D  +    F   + P          +  G+T E L
Sbjct: 358 ALDCEMCITEGGKSELTRISLVSW-DGERVLDEF---VKPEN-PIIDYLTRFSGVTKEKL 412

Query: 71  KDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
               +  S I  +  +    + +  I H+   D+  +           L    I+DT +I
Sbjct: 413 DPVTTNLSDIQQKLLNILTPR-SILIGHSLNSDLNALK----------LTHPFIVDTAAI 461

Query: 130 ARR-KHPSSRNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGSQINFGFK 186
               + P  +  L  LC+RY G  I      H  + D+       + ++    +    + 
Sbjct: 462 YPHPRGPPLKPSLKWLCQRYLGREIQKGMAGHDPVEDAKA----VLDLVKQKCEKGEAWG 517

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPL 212
           TNE       ++   +   +K   P+
Sbjct: 518 TNEASTESIFQRLARSSRPVKSSGPV 543


>gi|326476075|gb|EGE00085.1| exonuclease [Trichophyton tonsurans CBS 112818]
          Length = 734

 Score = 40.2 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 67/206 (32%), Gaps = 24/206 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D E    +     +  I  V   D  +    F   + P          +  G+T E L
Sbjct: 358 ALDCEMCITEGGKSELTRISLVSW-DGERVLDEF---VKPEN-PIIDYLTRFSGVTKEKL 412

Query: 71  KDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
               +  S I  +  +    + +  I H+   D+  +           L    I+DT +I
Sbjct: 413 DPVTTNLSDIQQKLLNILTPR-SILIGHSLNSDLNALK----------LTHPFIVDTAAI 461

Query: 130 ARR-KHPSSRNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGSQINFGFK 186
               + P  +  L  LC+RY G  I      H  + D+       + ++    +    + 
Sbjct: 462 YPHPRGPPLKPSLKWLCQRYLGREIQKGMAGHDPVEDAKA----VLDLVKQKCEKGEAWG 517

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPL 212
           TNE       ++   +   +K   P+
Sbjct: 518 TNEASTESIFQRLARSSRPVKSSGPV 543


>gi|325675967|ref|ZP_08155650.1| oligoribonuclease [Rhodococcus equi ATCC 33707]
 gi|325553205|gb|EGD22884.1| oligoribonuclease [Rhodococcus equi ATCC 33707]
          Length = 188

 Score = 40.2 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 55/162 (33%), Gaps = 27/162 (16%)

Query: 17  TGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG---RKNSPEALKLH---GITDEF 69
           TGL   +D++IEI A V   D +       + +  +            ++H   G+T+E 
Sbjct: 2   TGLRLGSDKLIEIAALVTDSDLNILGEGVDIVIHADDEALADMPDVVTQMHAKSGLTEEV 61

Query: 70  LKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                + +        +  E            ++   D GFI  ++  +  D     R+I
Sbjct: 62  RASTVTLAEAEQMVLAYIREHVPVAGTVPLAGNSIATDRGFIARDMPEL--DSHLHYRMI 119

Query: 125 DTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           D  SI    RR +P            +G        H AL D
Sbjct: 120 DVSSIKELCRRWYPR---------IYFGQP-EKGLSHRALAD 151


>gi|23752370|ref|NP_705685.1| gp62 [Burkholderia phage Bcep781]
 gi|23507237|gb|AAN38060.1| gp62 [Burkholderia phage Bcep781]
          Length = 655

 Score = 40.2 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 49/147 (33%), Gaps = 27/147 (18%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E     SK D + E G    LD   T      F  P             G++   
Sbjct: 6   LFLDFEA---SSKTD-LTEAGLGRYLDDPTTRAYCFTFRLP-------------GMSTAD 48

Query: 70  LKD--KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           L +  +P    I            + ++AHNA FD    N  L+R +     P   I  +
Sbjct: 49  LWEVGQPVPKQIVGHL------NGSPFVAHNAPFDFWIWNLVLRRQHGYHDLPEIQIGQV 102

Query: 128 SI--ARRKHPSSRNDLNSLCKRYGITI 152
               AR ++      L   C+  G+ +
Sbjct: 103 RCSAARARYNGLPGSLAGACEALGLPV 129


>gi|301170471|emb|CBW30078.1| oligoribonuclease [Haemophilus influenzae 10810]
          Length = 182

 Score = 39.8 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          +  +K   I  D+E TGL+ + +RIIEI  +        
Sbjct: 1  MPFDKQNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNI 39


>gi|328722324|ref|XP_001945457.2| PREDICTED: DNA polymerase epsilon catalytic subunit A-like isoform
           1 [Acyrthosiphon pisum]
          Length = 2242

 Score = 39.8 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 75/216 (34%), Gaps = 47/216 (21%)

Query: 2   IRKNKMRKIVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT-FQVFLCPNGRK 54
           I +  M  + FDIETT L     D+  D+I+ I   ++   Y   NR      +      
Sbjct: 255 IDRPDMIVLAFDIETTKLPLKFPDANTDQIMMISYMIDGQGYLINNREIISADVVDFEYT 314

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFIN----- 107
             PE   L  I +E     P  +++ + F++   E +    + +N   FD  F+      
Sbjct: 315 PKPEFEGLFTIFNE-----PDEAALINRFFEHIMEIRPHIIVTYNGDFFDWPFVETRAAV 369

Query: 108 ---AELQRINKDPLD-------PSRIIDTLSIARR--KHPSSRNDLNSLCK---RYG-IT 151
                 Q I             P+  +D L   +R    P    +L ++ K   RY  + 
Sbjct: 370 HDLNMSQEIGFSKNTAGVYSCRPAMHMDCLCWVKRDSYLPVGSQNLKAVAKAKLRYDPVE 429

Query: 152 ISHRSKHG------------ALLDSHLLSDVYIKMM 175
           +                   ++ D+     +Y+K +
Sbjct: 430 LDPEDMCRLATDEPQVLSNYSVSDAVATYYLYMKYV 465


>gi|298248789|ref|ZP_06972594.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
 gi|297551448|gb|EFH85314.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
          Length = 822

 Score = 39.8 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 47/162 (29%), Gaps = 29/162 (17%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNR--------TFQVFLCPNGRKNSPEALKLH 63
           FD+ETT LD    RI  I   +                 T    LC   R+  P+ ++ H
Sbjct: 168 FDVETTSLDPSRGRIFLIAIRDNRGQECILEAPTPKEEPTLITELCAVIRRLDPDVIENH 227

Query: 64  ---GITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
              G    FL+    +                A            F  A   R  +    
Sbjct: 228 NLFGFDLPFLEARAKALRVPLQ-----LGRSGAPL------QLESFEEAGAHRRKRKRFS 276

Query: 120 PS--RIIDTLSIARRK----HPSSRNDLNSLCKRYGITISHR 155
            +   +IDTL   RR            L  + + +G+    R
Sbjct: 277 VAGRELIDTLDAVRRYDFVARSLPSYRLKEVARHFGMAAPER 318


>gi|229847336|ref|ZP_04467438.1| oligoribonuclease [Haemophilus influenzae 7P49H1]
 gi|229809761|gb|EEP45485.1| oligoribonuclease [Haemophilus influenzae 7P49H1]
          Length = 182

 Score = 39.8 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          +  +K   I  D+E TGL+ + +RIIEI  +        
Sbjct: 1  MPFDKQNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNI 39


>gi|316969455|gb|EFV53549.1| exonuclease superfamily [Trichinella spiralis]
          Length = 586

 Score = 39.8 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 61/172 (35%), Gaps = 17/172 (9%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D E   +   +  +  +  V   +Y        V + P+ ++ +    K  G+T + L
Sbjct: 179 AIDCEMVKVGPDSHALSRLSIV-NENYEVL---LDVLVKPD-KQITDYVTKYSGMTPQLL 233

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           +           +       NA  + H+  +D+  +      +       +   ++    
Sbjct: 234 EGVTLRLEDVQHYLRKILPPNAILVGHSINYDMDALGLYHPYLVDIGFALNLNENSAL-- 291

Query: 131 RRKHPSSRNDLNSLCKR-YGITI-SHRSKHGALLDSHLLSDVY-IKMMVGGS 179
                  R  L+ LC+R  G+++      H ++ D++    ++ +K+  GG 
Sbjct: 292 -------RTSLHRLCERILGLSVQEGEGGHCSIEDAYATMRLFHLKLSEGGQ 336


>gi|218705075|ref|YP_002412594.1| putative exonuclease from phage origin [Escherichia coli UMN026]
 gi|293405078|ref|ZP_06649070.1| exonuclease [Escherichia coli FVEC1412]
 gi|218432172|emb|CAR13060.1| putative exonuclease from phage origin [Escherichia coli UMN026]
 gi|291427286|gb|EFF00313.1| exonuclease [Escherichia coli FVEC1412]
          Length = 823

 Score = 39.8 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 27/186 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D+ET G +  +  II IGA+      +T      F+     + +   +    I   F +
Sbjct: 645 IDLETMGKNP-DAPIISIGAIFF--DPQTGDMGPEFIKTIDLETAGGVIDRDTIKWWFKQ 701

Query: 72  ----------DKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINAELQRINKDP 117
                     D+        +  +F +E + E+      + A FD   +    +R     
Sbjct: 702 SREAQSAIMTDEIPLDDALLQLREFIDENSGEFFVQVWGNGANFDNTILRRSYERQGIP- 760

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD----VYIK 173
             P R  +   +          D ++   R  I      +H AL D+   +     ++ K
Sbjct: 761 -CPWRYYNDRDVRTIVELGKAIDFDA---RTAIQFEGE-RHNALDDARYQAKYVSVIWQK 815

Query: 174 MMVGGS 179
           ++   +
Sbjct: 816 LIPSQA 821


>gi|148652620|ref|YP_001279713.1| oligoribonuclease [Psychrobacter sp. PRwf-1]
 gi|148571704|gb|ABQ93763.1| Exonuclease, RNase T and DNA polymerase III [Psychrobacter sp.
           PRwf-1]
          Length = 193

 Score = 39.8 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 21/163 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRK-NSPEALKLH---G 64
            D+E TGLD+ ND IIEI  +   +          F + +             K H   G
Sbjct: 21  IDLEMTGLDTMNDDIIEIATIVTDEDLNILAEGPVFAIKVSDQKLNAMDDWNTKQHGQSG 80

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF----NEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           + D   +   +      E   F     +E  +    ++   D  F+  ++ ++ +     
Sbjct: 81  LIDRVRRSSVTLEQAEQETIAFLNKWVDEGKSPMCGNSICQDRRFLARQMPQLER--FFH 138

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R +D  SI    +    + L          +     H A+ D
Sbjct: 139 YRNLDVSSIKELCYRWRPDILK--------GVEKTGSHLAMDD 173


>gi|312958366|ref|ZP_07772887.1| periplasmic sensor signal transduction histidine kinase
           [Pseudomonas fluorescens WH6]
 gi|311287430|gb|EFQ65990.1| periplasmic sensor signal transduction histidine kinase
           [Pseudomonas fluorescens WH6]
          Length = 437

 Score = 39.8 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDPLDPS 121
             +TD+ ++D     +I  +F  F  +   E +    + D+   +   +   N+      
Sbjct: 251 TDLTDDMVRDIEDMDAILDQFLAFIRDGRDEVV---EEVDLTDLVREVVAPYNQSSEQVR 307

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             ++ +     +  S +  LN+L           + H A  D  + + V
Sbjct: 308 MRLEPIQPFALRRISMKRLLNNLI--------GNALHHAGSDVEVAAYV 348


>gi|254487826|ref|ZP_05101031.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
 gi|214044695|gb|EEB85333.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
          Length = 931

 Score = 39.8 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 32/148 (21%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD     ++ I                  + P      P   K H  T +
Sbjct: 345 YVAVDTETTGLDEMVAELVGISLC---------------VQPGKACYIPLIHKTH--TGD 387

Query: 69  FL-------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            L       + +               + +   I  N K+D    +    ++    +  +
Sbjct: 388 DLFGSEDLAEGQIPTEEALRMLTPMLEDPSIMKIGQNMKYD----SKIFAQLG---ITVA 440

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRY 148
            I DT+ ++   H     + +++L +RY
Sbjct: 441 PIDDTMLLSYVMHAGLHGHGMDALSERY 468


>gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
 gi|198273174|gb|EDY97443.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
          Length = 931

 Score = 39.8 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 47/142 (33%), Gaps = 32/142 (22%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
            +    D ETTG+D     ++ +      +        Q F  P       EAL +  I 
Sbjct: 358 QKFFSLDTETTGIDPITAELVGMSFSFAEN--------QAFYVPVPANR-EEALTIVNI- 407

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                 KP+F              ++  I  N K+D+  +       N       ++ DT
Sbjct: 408 -----FKPAFE-----------NPDSLKIGQNIKYDLIML------ANYGVTLKGKMFDT 445

Query: 127 LSIARRKHPSSRNDLNSLCKRY 148
           +       P  R+ ++ L + Y
Sbjct: 446 MIAHYVLQPELRHGMDYLAEIY 467


>gi|115396554|ref|XP_001213916.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114193485|gb|EAU35185.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 951

 Score = 39.8 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 89  EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII---DTLSIARRKHPSSRNDLNSLC 145
            ++   + HN   D+ ++      I++ P   +  I   DT    R       +   SL 
Sbjct: 445 SRHLVLVGHNVAMDMQYLREMGVHIDQKPAGTAGFIDVVDTADFFRMLRREETHR--SLA 502

Query: 146 KRYG-ITISHRSKHGALLDSHLLSD 169
           K    + ++  + H A  D+    +
Sbjct: 503 KVLHELEMTGWNLHNAGNDARYTLE 527


>gi|27378800|ref|NP_770329.1| hypothetical protein bsl3689 [Bradyrhizobium japonicum USDA 110]
 gi|27351949|dbj|BAC48954.1| bsl3689 [Bradyrhizobium japonicum USDA 110]
          Length = 68

 Score = 39.8 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL 34
          I+ D+ETTGLD   D +IE+G V+ 
Sbjct: 6  ILIDVETTGLDQHEDEVIELGMVKF 30


>gi|325265748|ref|ZP_08132436.1| epsilon subunit family exonuclease [Kingella denitrificans ATCC
          33394]
 gi|324982788|gb|EGC18412.1| epsilon subunit family exonuclease [Kingella denitrificans ATCC
          33394]
          Length = 43

 Score = 39.8 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 3  RKNKMRKIVFDIETTGLDSKNDRIIEIG 30
          R +K   ++ D+ETTG + + DRI EI 
Sbjct: 14 RWDK-PVVILDLETTGGNFQRDRITEIA 40


>gi|291298946|ref|YP_003510224.1| exonuclease RNase T and DNA polymerase III [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568166|gb|ADD41131.1| Exonuclease RNase T and DNA polymerase III [Stackebrandtia
           nassauensis DSM 44728]
          Length = 191

 Score = 39.8 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 23/165 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPE---ALKLH---G 64
            D E TGLD + D +IEI   V   +    +    + +               ++H   G
Sbjct: 3   IDCEMTGLDLQRDALIEIAVLVTDAELRVLDEGLDIVIHTEQSVLDGMVDVVKEMHGSSG 62

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLD 119
           +T E      + +       ++          A    ++   D GF+  ++  +N     
Sbjct: 63  LTQEVAAATTTVAEAEKRVLEYVRGHVPQPGTAPLCGNSIATDRGFLARDMPALNNHLHY 122

Query: 120 PSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
               + ++  + RR +P          + Y         H AL D
Sbjct: 123 RMIDVSSVKELTRRWYP----------RVYFAQPPKCMAHRALAD 157


>gi|288817697|ref|YP_003432044.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|288787096|dbj|BAI68843.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|308751295|gb|ADO44778.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6]
          Length = 576

 Score = 39.8 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 9/67 (13%)

Query: 84  WDFFNE--QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDL 141
            DF  +   +   + HN K+D+ F+     R   +P     + DT+  ++      R+ L
Sbjct: 60  VDFLKDLLVDKGIVGHNLKYDLKFLY----RYGIEP---YAVFDTMIASQLLGELDRHSL 112

Query: 142 NSLCKRY 148
             +   Y
Sbjct: 113 QKVAMHY 119


>gi|87302855|ref|ZP_01085666.1| DNA polymerase I [Synechococcus sp. WH 5701]
 gi|87282738|gb|EAQ74696.1| DNA polymerase I [Synechococcus sp. WH 5701]
          Length = 997

 Score = 39.8 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 80/251 (31%), Gaps = 47/251 (18%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIG----------AVELLDYSKTNRTFQV-FLC 49
           M   +  + I  D ETT L+     ++ +G          A   + +   +       L 
Sbjct: 375 MAATDPDQPIALDTETTSLNPFQAELVGVGLCWGEGSSDLAYIPIGHQPPSPAPSADLLT 434

Query: 50  PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           P   +   ++          L  +     + +    +           NAK+D   +   
Sbjct: 435 PASAEPPADS--------AVLSQQLPLDQVLTALAPWLESARHPKTLQNAKYDRLILL-- 484

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR-YGITIS--------------- 153
             R          ++DTL     +  ++++ L  L +R +G T +               
Sbjct: 485 --RHGLSL--EGVVMDTLLADYLRDANAKHGLEVLAERNFGFTPTSFSELVAKGETFAAV 540

Query: 154 ---HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNI--SLLKR 208
                +++ A+ D H+   +   +     Q+        D+     +  +  +  + ++ 
Sbjct: 541 PIAAAARYCAM-DVHVTWRLTPLLRGQLQQLGEALPKLLDQVELPLEPVLARMEATGIRI 599

Query: 209 DKPLFTRITKE 219
           DKP    +++E
Sbjct: 600 DKPYLATLSEE 610


>gi|27462176|gb|AAO15360.1| thermostable DNA polymerase [Aquifex pyrophilus]
          Length = 574

 Score = 39.8 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 47/142 (33%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R  K   +  D ETTG      R++++G     D  K       ++         +  ++
Sbjct: 18  RLEKSPYLYLDTETTG---NRIRLVQLG-----DDEK------TYVI--------DLYEI 55

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H IT                  +  +E+    I HN KFD+ ++           ++P  
Sbjct: 56  HDITP---------------LRELISEKG--VIGHNLKFDLHYLMNYQ-------IEPLA 91

Query: 123 IIDTLSIARRKHPSSRNDLNSL 144
             DT+ IA       R+ LN L
Sbjct: 92  TFDTM-IASFLLGYERHSLNHL 112


>gi|307195065|gb|EFN77118.1| hypothetical protein EAI_12370 [Harpegnathos saltator]
          Length = 541

 Score = 39.8 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 8/59 (13%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            ++FD+ET+G   +N  I+++ AV   +       F V++ P     +  A +++G+ +
Sbjct: 480 IVIFDLETSG-RGRNADILQLAAVANDN------VFSVYIEPTQA-INKSASEINGLQN 530


>gi|157373929|ref|YP_001472529.1| oligoribonuclease [Shewanella sediminis HAW-EB3]
 gi|157316303|gb|ABV35401.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis
           HAW-EB3]
          Length = 181

 Score = 39.8 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 57/172 (33%), Gaps = 39/172 (22%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL--------- 62
            D+E TGLD   DR+IEI  +       T++   +              +L         
Sbjct: 11  VDLEMTGLDPSVDRVIEIATI------VTDKELNILAEGPVIAIHQSEEQLARMDDWNQK 64

Query: 63  H----GITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAELQRIN 114
           H    G+ D     K S     +    F ++     ++    ++   D  F+N  +  + 
Sbjct: 65  HHGESGLVDRVRASKYSEEQAVAMTIAFLSQHATKGDSPMCGNSIGQDRRFMNRYMPEL- 123

Query: 115 KDPLDPSRIIDTLSIA---RRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +     R ID  SI    RR  P   N             + +  H AL+D
Sbjct: 124 -EDYFHYRNIDVSSIKELVRRWKPELMNG-----------FTKQGTHKALVD 163


>gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40]
 gi|89949322|gb|ABD79337.1| DNA polymerase I [Saccharophagus degradans 2-40]
          Length = 926

 Score = 39.8 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 77/255 (30%), Gaps = 58/255 (22%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +K     FD ETT L+              ++      +F   + P      P     
Sbjct: 343 RLSKAELFAFDTETTSLN-------------YMEAKVVGVSFA--VAPGEAAYVPFGHDY 387

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G       ++ S   +  +      ++N + +  N K+D   +       N        
Sbjct: 388 LG-----APEQLSEEQVLGKLKPLLEDENVKKVGQNLKYDASVL------ANHGIALQGI 436

Query: 123 IIDTLSIARRKHPSS-RNDLNSLC-KRYG---------------------ITISHRSKHG 159
             DT+  +   + ++ R+D+++L     G                     I +   + + 
Sbjct: 437 AFDTMLESYVVNSTANRHDMDTLALAHLGHTNISFEEIAGKGAKQLTFNQIQLDQAAPY- 495

Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI--- 216
           A  D+ +     +++           +  +  F   E   VP +S ++R   L       
Sbjct: 496 AAEDADIT----LRLHQALWPQVEAVEGIKSLFENVELPLVPVLSKVERTGALIDATILG 551

Query: 217 -TKEELDEHDKTIQT 230
               EL    + IQ 
Sbjct: 552 QQSAELAADLERIQR 566


>gi|332705531|ref|ZP_08425609.1| DNA polymerase I [Lyngbya majuscula 3L]
 gi|332355891|gb|EGJ35353.1| DNA polymerase I [Lyngbya majuscula 3L]
          Length = 996

 Score = 39.8 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 50/147 (34%), Gaps = 34/147 (23%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALKLHGI 65
            + +D ET+ L+ ++ +++ IG     +++        ++     +G     +       
Sbjct: 408 PVAWDTETSDLEPRDAQLVGIGCCWGKEFTDV-----AYIPIGHKDGTNLDKDI------ 456

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                        +           +   +  N+KFD   +     R N   L    + D
Sbjct: 457 -------------VLESLRPILESSDYPKVLQNSKFDRLVL-----RCNGIQLA-GVVFD 497

Query: 126 TLSIARRKHPSSRNDLNSLCKRY-GIT 151
           T+  +   +P + + L+ L   Y GI 
Sbjct: 498 TMLASYVLNPETSHKLSDLGLHYLGIE 524


>gi|229587825|ref|YP_002869944.1| osmolarity-sensing histidine-kinase [Pseudomonas fluorescens SBW25]
 gi|229359691|emb|CAY46539.1| osmolarity-sensing histidine-kinase [Pseudomonas fluorescens SBW25]
          Length = 437

 Score = 39.8 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 12/109 (11%)

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDPLDPS 121
             +TD+ ++D     +I  +F  F  +   E +    + D+   +   +   N++     
Sbjct: 251 TDLTDDMVRDIEDMDAILDQFLAFIRDGRDEVV---EEVDLTDLVREVVAPYNQNGEQVR 307

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             ++ +     +  S +  LN+L           + H A  D  + + V
Sbjct: 308 MRLEPIQPFALRRVSMKRLLNNLI--------GNALHHAGSDVEVAAYV 348


>gi|195158371|ref|XP_002020065.1| GL13784 [Drosophila persimilis]
 gi|194116834|gb|EDW38877.1| GL13784 [Drosophila persimilis]
          Length = 2218

 Score = 39.8 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 70/208 (33%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT-FQVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   +  TNR      +        PE    
Sbjct: 269 LAFDIETTKLPLKFPDAQTDQIMMISYMIDGQGFLITNREIISSNVDDFEYTPKPEFEG- 327

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGF--------------- 105
               +  + ++ +   +  +F+D   E +    + +N   FD  F               
Sbjct: 328 ----NFVVYNEDNEMQLLQKFFDHIMEVRPHIIVTYNGDFFDWPFVETRAAVYDLDMKQE 383

Query: 106 INAELQRINKDPLDPSRIIDTLSIARR--KHPSSRNDLNSLCK---RYG-ITISHRSKHG 159
           I     R       PS  +D L   +R    P     L ++ K   RY  + +       
Sbjct: 384 IGFSKMRDGIYLSRPSIHMDCLCWVKRDSYLPVGSQGLKAVAKAKLRYDPVELDPEDMCR 443

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 444 MAVEQPQVLANYSVSDAVATYYLYMKYV 471


>gi|145637656|ref|ZP_01793311.1| oligoribonuclease [Haemophilus influenzae PittHH]
 gi|145269179|gb|EDK09127.1| oligoribonuclease [Haemophilus influenzae PittHH]
          Length = 182

 Score = 39.8 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          +  +K   I  D+E TGL+ + +RIIEI  +        
Sbjct: 1  MPFDKQNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNI 39


>gi|198450202|ref|XP_001357879.2| GA19850 [Drosophila pseudoobscura pseudoobscura]
 gi|198130933|gb|EAL27015.2| GA19850 [Drosophila pseudoobscura pseudoobscura]
          Length = 2242

 Score = 39.8 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 70/208 (33%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT-FQVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   +  TNR      +        PE    
Sbjct: 269 LAFDIETTKLPLKFPDAQTDQIMMISYMIDGQGFLITNREIISSNVDDFEYTPKPEFEG- 327

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGF--------------- 105
               +  + ++ +   +  +F+D   E +    + +N   FD  F               
Sbjct: 328 ----NFVVYNEDNEMQLLQKFFDHIMEVRPHIIVTYNGDFFDWPFVETRAAVYDLDMKQE 383

Query: 106 INAELQRINKDPLDPSRIIDTLSIARR--KHPSSRNDLNSLCK---RYG-ITISHRSKHG 159
           I     R       PS  +D L   +R    P     L ++ K   RY  + +       
Sbjct: 384 IGFSKMRDGIYLSRPSIHMDCLCWVKRDSYLPVGSQGLKAVAKAKLRYDPVELDPEDMCR 443

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 444 MAVEQPQVLANYSVSDAVATYYLYMKYV 471


>gi|44888877|gb|AAS48176.1| Osmolarity-sensing histidine-kinase [Pseudomonas fluorescens]
          Length = 437

 Score = 39.8 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 12/107 (11%)

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDPLDPSRI 123
           +TD+ ++D     +I  +F  F  +   E +    + D+   +   +   N++       
Sbjct: 253 LTDDMVRDIEDMDAILDQFLAFIRDGRDEVV---EEVDLTDLVREVVAPYNQNGEQVRMR 309

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
           ++ +     +  S +  LN+L           + H A  D  + + V
Sbjct: 310 LEPIQPFALRRVSMKRLLNNLI--------GNALHHAGSDVEVAAYV 348


>gi|313222512|emb|CBY39414.1| unnamed protein product [Oikopleura dioica]
          Length = 458

 Score = 39.8 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 22/168 (13%)

Query: 28  EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPS-FSSIFSEFWDF 86
           E+  V ++D    +     F  P G        K  GIT+  LK+  S    +  +   +
Sbjct: 303 ELARVTVID-ENMDLVLDSFCKPRGAILDYN-EKYSGITEADLKNITSDLREVQKKVRYY 360

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-LSIARRKHPSSRNDLNSLC 145
            +E++   + H+   D+  +           +   + +DT +    +K    +  L +L 
Sbjct: 361 ISEED-ILVGHSLDSDLKALK----------IHHKKCVDTSVVYPHKKGLPYKRGLKTLM 409

Query: 146 -KRYGITISHRSKHGALL-----DSHLLSDV-YIKMMVGGSQINFGFK 186
            +  G  I   +  GA       D+     + + K+        F   
Sbjct: 410 REECGKVIQEETADGAYGHDSSEDAKAALQLMFKKLEEDQKAGKFADD 457


>gi|197334850|ref|YP_002157125.1| oligoribonuclease [Vibrio fischeri MJ11]
 gi|197316340|gb|ACH65787.1| oligoribonuclease [Vibrio fischeri MJ11]
          Length = 181

 Score = 39.8 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +  N    I  D+E TGLD +  +IIEI ++
Sbjct: 1  MAINDQNLIWVDLEMTGLDPETHKIIEIASI 31


>gi|17507143|ref|NP_493616.1| hypothetical protein F33H2.5 [Caenorhabditis elegans]
 gi|3876643|emb|CAB04263.1| C. elegans protein F33H2.5, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 2144

 Score = 39.8 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 16/119 (13%)

Query: 8   RKIVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEAL 60
           + + FDIETT L     D ++D I+ I   V+   +   NR      +         E +
Sbjct: 254 KVLAFDIETTKLPLKFPDRESDEIMMISYMVDGRGFLIINREIVSADINAFEYTPKAEYI 313

Query: 61  -KLHGITDEFLKDKPSFSSIFSEFWD-FFNEQNAEWIAHNAK-FDVGFINAELQRINKD 116
            +        + ++   +++  +F+D F   +    + +N   FD  F+ A  +    +
Sbjct: 314 GEFT------VWNEKDEAALIRKFFDHFLQVRPNIVVTYNGDFFDWPFVEARAKIRGFN 366


>gi|209882200|ref|XP_002142537.1| exonuclease family protein [Cryptosporidium muris RN66]
 gi|209558143|gb|EEA08188.1| exonuclease family protein [Cryptosporidium muris RN66]
          Length = 1728

 Score = 39.8 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 11/93 (11%)

Query: 84   WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLN 142
              F  +    +I H    D   IN          +   +IIDT+ I R   P  R   L 
Sbjct: 1601 LQFMVDSGVVFIGHGLSSDFKIINIY--------VPCQQIIDTVEIYRL--PEERFISLR 1650

Query: 143  SLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             L K           H ++ D+ +  ++++K +
Sbjct: 1651 FLAKFVLNKNIQCEGHDSIEDAKIAYELFLKYL 1683


>gi|68476633|ref|XP_717609.1| hypothetical protein CaO19.5071 [Candida albicans SC5314]
 gi|68476780|ref|XP_717535.1| hypothetical protein CaO19.12537 [Candida albicans SC5314]
 gi|46439249|gb|EAK98569.1| hypothetical protein CaO19.12537 [Candida albicans SC5314]
 gi|46439326|gb|EAK98645.1| hypothetical protein CaO19.5071 [Candida albicans SC5314]
 gi|238878773|gb|EEQ42411.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 763

 Score = 39.8 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 9  KIVFDIETTGLDS------KNDRIIEIGAVELLDYSKTNRTFQV---FLCPNGRKNSPEA 59
           I+  I TT  DS       +  +IE  A E +D S T  T       + P     +P  
Sbjct: 5  YIIIHISTTCDDSPTFVTKDSSELIEF-AWETVD-SVTLETLYKGSNLVRPTNTPITPYC 62

Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ 90
           K+H IT + +K+  SF    + F  +  E 
Sbjct: 63 SKIHRITWDNVKNAGSFKDAITNFDQYVQEH 93


>gi|256545132|ref|ZP_05472498.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399173|gb|EEU12784.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
          Length = 305

 Score = 39.8 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 29/153 (18%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K  + + DIETTGLD K D+++ +G +   DY K       ++     KN  E +KL  I
Sbjct: 14  KKDECILDIETTGLDPKIDKLVVLGLI-YFDYKKNK----FYIDQYFSKNDKEEVKLLKI 68

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRII 124
             E +++K                   + I +N   FD+ F+N  L    ++P+     +
Sbjct: 69  YKEKIQNK-------------------KLITYNGDIFDLPFLNIRLIENKEEPIW-QINL 108

Query: 125 DT---LSIARRKHPSSRNDLNSLCKRYGITISH 154
           D    +   R+        L ++ K  GI  + 
Sbjct: 109 DLYKIIKNKRKLIEFDSMKLTNIEKIVGIERND 141


>gi|237751826|ref|ZP_04582306.1| DNA polymerase I [Helicobacter bilis ATCC 43879]
 gi|229373192|gb|EEO23583.1| DNA polymerase I [Helicobacter bilis ATCC 43879]
          Length = 1102

 Score = 39.8 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 50/171 (29%), Gaps = 37/171 (21%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLCPNGRKNS- 56
           K   + FD ET GLD +   ++                 +    R    +     +  S 
Sbjct: 487 KGNLVAFDCETNGLDVREADMVGFSFCFDGLHAYYVPFLHGGIKREKSKYEVMKSQSISQ 546

Query: 57  ---------PEALKLHGIT------DEFLKDKPSFSSI----FSEFWDFFNEQNAEWIAH 97
                    P        T      D    + P  + I      +  +         I H
Sbjct: 547 NLFSTEEAKPTFSLFDDTTMSKDSADNDTTNAP--AQISQSDAKKALEILFS--YPLIGH 602

Query: 98  NAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
           N KFD   ++         P    +  D++ +A    PS    L++L K++
Sbjct: 603 NIKFD---LHIAWHNFGIKPKHTPQ--DSMLLAWLDDPSQSVSLDNLMKKH 648


>gi|119946792|ref|YP_944472.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
 gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
          Length = 938

 Score = 39.8 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 23/140 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETT LD    RI+ +      +        Q  +       + + +           
Sbjct: 355 FDTETTSLDYMQARIVGLSFAVQSN---VGSDEQPIIEAAYLPLAHDYI----------- 400

Query: 72  DKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           D P     ++   +       +  + +  N K+D   +      +N          DT+ 
Sbjct: 401 DAPKQLDLTTTLEKLRPLLESEKYKKVGQNLKYDRSVL------LNHGIELKGIKFDTML 454

Query: 129 IARRKHPSSRNDLNSLCKRY 148
            +     + R+D+++L  +Y
Sbjct: 455 ESYVLDSTGRHDMDTLALKY 474


>gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826]
          Length = 878

 Score = 39.8 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 49/143 (34%), Gaps = 34/143 (23%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            + FD ETTG+DSK+ +I+                F            P A   H     
Sbjct: 317 IVAFDTETTGVDSKSAKIVG---------------FSFSFNDEDAYYVPVA---HNYL-- 356

Query: 69  FLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                P    I  +F  +   Q       I  N K+D   +      +  +P    +  D
Sbjct: 357 ---GAP--KQIDLKFATWAVGQIYKGCV-IGQNLKYDFEIVKNN---LGLNPPANFK--D 405

Query: 126 TLSIARRKHPSSRNDLNSLCKRY 148
           T+ +A    P+S   +++L KR 
Sbjct: 406 TMILAWLSDPNSSVGMDALAKRL 428


>gi|15242645|ref|NP_198847.1| exonuclease family protein [Arabidopsis thaliana]
 gi|10178140|dbj|BAB11585.1| exonuclease-like protein [Arabidopsis thaliana]
 gi|332007149|gb|AED94532.1| exonuclease-like protein [Arabidopsis thaliana]
          Length = 348

 Score = 39.8 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 45/198 (22%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF------------NEQN 91
           F  ++ P     +    ++ GI  E L+D         +  +F             N + 
Sbjct: 159 FHTYVKPTI-PVTNYRYEMTGIRPENLRDAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKA 217

Query: 92  AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRY-- 148
              + H        ++  L  +  +    S I DT         S   N L  L + Y  
Sbjct: 218 RILVGHG-------LDNHLDSLQLEY-SSSMIRDTAEYPPLMKSSKLSNSLKYLTQAYLG 269

Query: 149 -----GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNI 203
                GI   +        D      +Y +M        +     E      + +   N 
Sbjct: 270 YDIHVGIQDPYE-------DCVATMRLYTRM-------RYQKHRAEAYPLASDTQNHNNF 315

Query: 204 SLLKRDKPLFTRITKEEL 221
           +  ++++    R++ EEL
Sbjct: 316 AAWRQNE--LERMSPEEL 331


>gi|296451266|ref|ZP_06893006.1| two component sensor histidine kinase [Clostridium difficile NAP08]
 gi|296259872|gb|EFH06727.1| two component sensor histidine kinase [Clostridium difficile NAP08]
          Length = 411

 Score = 39.8 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I K++++K+  D+ET         I E+  ++  +    +R     +   G   S   ++
Sbjct: 185 ISKDELKKVNADLET-----YASSIEELAILKERNR--ISREIHDSV---GHSLSTTIIQ 234

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE 89
           L+ I ++ LKDKP  S +  E  +F  E
Sbjct: 235 LNAI-EKLLKDKPLISELVHELREFVTE 261


>gi|260428784|ref|ZP_05782761.1| DNA polymerase I [Citreicella sp. SE45]
 gi|260419407|gb|EEX12660.1| DNA polymerase I [Citreicella sp. SE45]
          Length = 935

 Score = 39.8 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 47/147 (31%), Gaps = 30/147 (20%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK------L 62
            +  D ETTGL+     ++ I                  + P      P A +      L
Sbjct: 349 WVAVDTETTGLNEMACDLVGISLC---------------ITPGKACYIPLAHRAAATDDL 393

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G +DE  + +               +     I  N K+D          I   P+D   
Sbjct: 394 FG-SDELAEGQMPMQDALDLLKPLLEDPAVMKIGQNMKYDAKIFARY--GIGITPID--- 447

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRY 148
             DT+ ++   H     + +++L +RY
Sbjct: 448 --DTMLMSYAMHGGLHGHGMDTLSERY 472


>gi|255655282|ref|ZP_05400691.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-23m63]
 gi|296880382|ref|ZP_06904345.1| two component sensor histidine kinase [Clostridium difficile NAP07]
 gi|296428623|gb|EFH14507.1| two component sensor histidine kinase [Clostridium difficile NAP07]
          Length = 387

 Score = 39.8 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I K++++K+  D+ET         I E+  ++  +    +R     +   G   S   ++
Sbjct: 161 ISKDELKKVNADLET-----YASSIEELAILKERNR--ISREIHDSV---GHSLSTTIIQ 210

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE 89
           L+ I ++ LKDKP  S +  E  +F  E
Sbjct: 211 LNAI-EKLLKDKPLISELVHELREFVTE 237


>gi|294139250|ref|YP_003555228.1| oligoribonuclease [Shewanella violacea DSS12]
 gi|293325719|dbj|BAJ00450.1| oligoribonuclease [Shewanella violacea DSS12]
          Length = 181

 Score = 39.8 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D+E TGLD + DR+IEI  +
Sbjct: 11 VDLEMTGLDPETDRVIEIATI 31


>gi|33357113|pdb|1J9A|A Chain A, Oligoribonuclease
          Length = 184

 Score = 39.8 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 51/174 (29%), Gaps = 29/174 (16%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPN---GR 53
           +K   I  D+E TGLD + +RIIEI  +                       L       +
Sbjct: 6   DKQNLIWIDLEXTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKXNDWCQ 65

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           K   E   +  I    L ++ +          +  +  +    ++   D  F+      +
Sbjct: 66  KTHSENGLIERIKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYXPDL 125

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI----SHRSKHGALLD 163
                   R +D             + L  L  R+   I       + H AL D
Sbjct: 126 --ADYFHYRHLDV------------STLKELAARWKPEILEGFKKENTHLALDD 165


>gi|88858891|ref|ZP_01133532.1| oligoribonuclease [Pseudoalteromonas tunicata D2]
 gi|88819117|gb|EAR28931.1| oligoribonuclease [Pseudoalteromonas tunicata D2]
          Length = 181

 Score = 39.8 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 58/173 (33%), Gaps = 24/173 (13%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--------NRTFQVFLCPNGR 53
           +  ++   I  D+E TGL+ K D+I+EI  +                       L     
Sbjct: 1   MSFHESNLIWLDLEMTGLEPKTDKILEIATIVTDCDLNILAEGPVIAVHQSDELLD---- 56

Query: 54  KNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFI 106
                 +K H   G+T    +   +      +   F  +      +    ++   D  F+
Sbjct: 57  GMDEWCVKQHGGSGLTARCRQSSFTEQDAIEQTISFLEKWVPKGKSPMCGNSIGQDRRFL 116

Query: 107 NAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
           NA +  +       +  I T+  +ARR  P   N      K+ G+ ++    H
Sbjct: 117 NAYMPELEDYFHYRNLDISTIKELARRWKPEVLNS----IKKKGVHLALEDIH 165


>gi|120597485|ref|YP_962059.1| oligoribonuclease [Shewanella sp. W3-18-1]
 gi|146294374|ref|YP_001184798.1| oligoribonuclease [Shewanella putrefaciens CN-32]
 gi|166216588|sp|A4YAL6|ORN_SHEPC RecName: Full=Oligoribonuclease
 gi|166216590|sp|A1RFR0|ORN_SHESW RecName: Full=Oligoribonuclease
 gi|120557578|gb|ABM23505.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp.
           W3-18-1]
 gi|145566064|gb|ABP76999.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
           putrefaciens CN-32]
 gi|319427729|gb|ADV55803.1| Exonuclease RNase T and DNA polymerase III [Shewanella putrefaciens
           200]
          Length = 181

 Score = 39.8 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 11/144 (7%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRK---NSP 57
           +  N    I  D+E TGL+   DRIIEI   V   + +   +   + +            
Sbjct: 1   MTANVNNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQPDEVLAAMDD 60

Query: 58  EALKLH---GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAEL 110
              K H   G+ D     + + +   ++   F  +      +    ++   D  F+N  +
Sbjct: 61  WNQKHHGESGLIDRVRASQDNEAQAVAKTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYM 120

Query: 111 QRINKDPLDPSRIIDTLSIARRKH 134
           + +       +  + T+    ++ 
Sbjct: 121 RELEDYFHYRNLDVSTVKELVKRW 144


>gi|257094889|ref|YP_003168530.1| Exonuclease RNase T and DNA polymerase III [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047413|gb|ACV36601.1| Exonuclease RNase T and DNA polymerase III [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 181

 Score = 39.8 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 61/167 (36%), Gaps = 29/167 (17%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG----RKNSPEALKLHGITD 67
            D+E TGLD + +RIIE+  V       T      ++                K HG + 
Sbjct: 11  LDMEMTGLDPERERIIELAIVITDGQLATLAESPAWVIHQDDTCLDAMDEWNRKTHGRSG 70

Query: 68  --EFLK----DKPSFSSIFSEFW-DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
             E ++    D+ +  +    F  ++  + ++    ++   D  F+   L +   +    
Sbjct: 71  LIERVRVSALDEVAVEAAALAFVQEWVPQASSPLCGNSVGQDRRFMVKYLPQF--EAWFH 128

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS----HRSKHGALLD 163
            R +D             + L  LC+R+   ++     ++ H AL D
Sbjct: 129 YRNLDV------------STLKELCRRWKPELAKGFVKKADHTALGD 163


>gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
 gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
          Length = 932

 Score = 39.8 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 45/137 (32%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETT  D     ++ +      +        Q F  P     S EA K   I D F  
Sbjct: 364 LDTETTSTDPIRAELVGMSFSYAEN--------QAFYVPVPADRS-EAQK---IVDRF-- 409

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
            +P F +   E            +  N K+D+  +     ++           DT+    
Sbjct: 410 -RPVFEN--REIMK---------VGQNIKYDMLVLANYGVQLQGPLF------DTMVAHY 451

Query: 132 RKHPSSRNDLNSLCKRY 148
              P  R++++ L + Y
Sbjct: 452 VLQPELRHNMDYLAEIY 468


>gi|171741065|ref|ZP_02916872.1| hypothetical protein BIFDEN_00131 [Bifidobacterium dentium ATCC
           27678]
 gi|283455552|ref|YP_003360116.1| orn Oligoribonuclease [Bifidobacterium dentium Bd1]
 gi|306823408|ref|ZP_07456783.1| oligoribonuclease [Bifidobacterium dentium ATCC 27679]
 gi|309802746|ref|ZP_07696850.1| oligoribonuclease [Bifidobacterium dentium JCVIHMP022]
 gi|171276679|gb|EDT44340.1| hypothetical protein BIFDEN_00131 [Bifidobacterium dentium ATCC
           27678]
 gi|283102186|gb|ADB09292.1| orn Oligoribonuclease [Bifidobacterium dentium Bd1]
 gi|304553115|gb|EFM41027.1| oligoribonuclease [Bifidobacterium dentium ATCC 27679]
 gi|308220810|gb|EFO77118.1| oligoribonuclease [Bifidobacterium dentium JCVIHMP022]
          Length = 217

 Score = 39.8 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 25/170 (14%)

Query: 8   RKIVFDIETTGLDSK-NDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP---EALKL 62
           R I  D E TGLD    D ++E+  V    D +  +      + P+ +           +
Sbjct: 16  RLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDFVIKPSQKAVDHMNDFVRNM 75

Query: 63  H---GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-----AHNAKFDVGFINAELQRIN 114
           H   G+  E  +   S     ++  ++      + +      +    D  F++  +  + 
Sbjct: 76  HTRSGLIKE-WEHGLSLDEAQAKVVEYVKRFTPDGVKPLLAGNTIGSDKKFLDHYMPELM 134

Query: 115 KDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +     +  + T   +ARR +P                  +   H AL D
Sbjct: 135 EHLHYRTIDVSTFKELARRWYP---------AVYLNRPPKNGG-HRALAD 174


>gi|158293870|ref|XP_315205.3| AGAP004615-PA [Anopheles gambiae str. PEST]
 gi|157016510|gb|EAA10584.3| AGAP004615-PA [Anopheles gambiae str. PEST]
          Length = 2204

 Score = 39.8 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 73/211 (34%), Gaps = 49/211 (23%)

Query: 9   KIVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT-FQVFLCPNGRKNSPEALK 61
            + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE   
Sbjct: 248 ILAFDIETTKLPLKFPDAQTDQIMMISYMIDGQGYLITNREIISGDVNDFEYTPKPEFEG 307

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQ-------- 111
                +  + ++P+   +  +F+D   E +   ++ +N   FD  F+ A           
Sbjct: 308 -----NFIVFNEPNELGLLQKFFDHVLEVKPHIFVTYNGDFFDWPFVEARAAVYDLDMKR 362

Query: 112 ---------RINKDPLDPSRIIDTLSIARR--KHPSSRNDLNSLCK---RYG-ITISHRS 156
                    R       P+  +D L   +R    P     L ++ K   RY  + +    
Sbjct: 363 EIGFSKVNGRDGNYLCRPAMHLDCLCWVKRDSYLPVGSQGLKAVAKSKLRYDPVELDPEE 422

Query: 157 KHG------------ALLDSHLLSDVYIKMM 175
                          ++ D+     +Y+K +
Sbjct: 423 MCRMAVEQPQVLANYSVSDAVATYYLYMKYV 453


>gi|309972889|gb|ADO96090.1| Oligoribonuclease [Haemophilus influenzae R2846]
          Length = 182

 Score = 39.8 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          +  +K   I  D+E TGL+ + +RIIEI  +        
Sbjct: 1  MSFDKQNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNI 39


>gi|328722326|ref|XP_003247545.1| PREDICTED: DNA polymerase epsilon catalytic subunit A-like isoform
           2 [Acyrthosiphon pisum]
          Length = 2069

 Score = 39.8 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 75/216 (34%), Gaps = 47/216 (21%)

Query: 2   IRKNKMRKIVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT-FQVFLCPNGRK 54
           I +  M  + FDIETT L     D+  D+I+ I   ++   Y   NR      +      
Sbjct: 255 IDRPDMIVLAFDIETTKLPLKFPDANTDQIMMISYMIDGQGYLINNREIISADVVDFEYT 314

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFIN----- 107
             PE   L  I +E     P  +++ + F++   E +    + +N   FD  F+      
Sbjct: 315 PKPEFEGLFTIFNE-----PDEAALINRFFEHIMEIRPHIIVTYNGDFFDWPFVETRAAV 369

Query: 108 ---AELQRINKDPLD-------PSRIIDTLSIARR--KHPSSRNDLNSLCK---RYG-IT 151
                 Q I             P+  +D L   +R    P    +L ++ K   RY  + 
Sbjct: 370 HDLNMSQEIGFSKNTAGVYSCRPAMHMDCLCWVKRDSYLPVGSQNLKAVAKAKLRYDPVE 429

Query: 152 ISHRSKHG------------ALLDSHLLSDVYIKMM 175
           +                   ++ D+     +Y+K +
Sbjct: 430 LDPEDMCRLATDEPQVLSNYSVSDAVATYYLYMKYV 465


>gi|310765929|gb|ADP10879.1| DNA polymerase I [Erwinia sp. Ejp617]
          Length = 929

 Score = 39.8 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 84/251 (33%), Gaps = 67/251 (26%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD+ET  LD+ +  II               +F     P      P A   H   D   
Sbjct: 353 AFDLETDSLDTLSANII-------------GLSFAT--APGEAAYLPVA---HDYLDA-- 392

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++   S + +       +  A+ +  N KFD G +         D        DT+  +
Sbjct: 393 PEQLDRSDVLARLKPLLEDPQAQKVGQNLKFDRGVLKR------YDIELQGIRFDTMLES 446

Query: 131 RRKHP-SSRNDLNSLCKRY----------------------GITISHRSKHGALLDSHLL 167
              +  + R+D+++L  R+                       I +   + H A  D+ + 
Sbjct: 447 YALNSVAGRHDMDTLASRWLNHKTVTFEEIAGKGKNQLTFNQIALEQ-AAHYAAEDADVT 505

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF-------------T 214
             +++KM           +  ++ F   E   VP IS ++R+  L              +
Sbjct: 506 LQLHVKM----WPELEKEQGPKNVFEHVEMPLVPVISRIERNGVLIAPGILATHSQELGS 561

Query: 215 RITKEELDEHD 225
           R+ + EL  H+
Sbjct: 562 RLAELELKAHE 572


>gi|4102990|gb|AAD01637.1| DNA polymerase epsilon homolog [Emericella nidulans]
          Length = 2207

 Score = 39.8 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 14/116 (12%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     DS  D+I+ I   ++   +  TNR      +        PE    
Sbjct: 256 LAFDIETTKLPLKFPDSVIDQIMMISYMIDGQGFLITNREIVSEDIDDFEYTPKPEYSG- 314

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAK-FDVGFINAELQRINKD 116
                  + ++P+  ++   F++   E     IA +N   FD  F+ A    +  D
Sbjct: 315 ----PFMIFNEPNERAVIERFFEHIKEAKPTVIATYNGDFFDWPFVEARASVLGID 366


>gi|227499563|ref|ZP_03929670.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227218322|gb|EEI83576.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 301

 Score = 39.8 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 32/146 (21%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +++N+M   + DIETTGLDS+ D+++ +G +E  +Y K       ++     +N  E  +
Sbjct: 13  LKENEM---ILDIETTGLDSRVDKLVLLGLIE-KNYDK------TYIVQYFAQNDDEEER 62

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP--L 118
           L  I                +       +N   + +N   FD+ F+N  L      P  +
Sbjct: 63  LLKIY-------------LKKI------KNNTLVTYNGDTFDLAFLNNRLIDHKLFPVLV 103

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSL 144
           D   ++  +   R+        L  +
Sbjct: 104 DCVDLLKVVKKYRKFFDFDSLKLTDI 129


>gi|330843207|ref|XP_003293552.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
 gi|325076115|gb|EGC29930.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
          Length = 1334

 Score = 39.8 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 28/153 (18%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA- 59
           M  KNK      D ET  +D K         V  + + +    F ++  P+ +       
Sbjct: 619 MQHKNK--YHACDTETIAIDLKK--------VSPIGHGRMI-CFSIYCGPDVKFFDGNTR 667

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           L +       + D  +  ++  EF ++F +++   + HN  FD           N +   
Sbjct: 668 LWV------DVMDDINGEAVLQEFKEYFEDESILKVWHNYAFDRHIF------YNHNINV 715

Query: 120 PSRIIDTLSIARR----KHPSSRNDLNSLCKRY 148
                DTL +AR     +  S    L +LC+  
Sbjct: 716 KGFGGDTLHMARLWNAARQNSGGYSLEALCREL 748


>gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 930

 Score = 39.8 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTGLD+    I+ +            + + V        +  +AL++  I      
Sbjct: 361 FDTETTGLDALVADIVGLSFAFEK-----GKAYYV----PTPDSREQALEIVNI------ 405

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                      F     + N E +  N K+D+  ++    ++           DT+    
Sbjct: 406 -----------FKPVLEDANIEKVGQNIKYDILLLSRYDVKVKGTLF------DTMLAHY 448

Query: 132 RKHPSSRNDLNSLCKRY 148
              P +R+ ++ L + Y
Sbjct: 449 LIDPDTRHGMDVLAENY 465


>gi|118102084|ref|XP_001232173.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 293

 Score = 39.8 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 47/168 (27%), Gaps = 14/168 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G            A   +   + +  +  ++ P          +  GI  
Sbjct: 116 KLVAIDCEMVGTGPGGC--TSSLARCSIVGYEGDVLYDSYVRPT-EPIVDYRTRWSGIRK 172

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + + +   F     E     +      + H    D   +     +     L        L
Sbjct: 173 KHMVNAVPFCKAQREILKILS--GKVVVGHAVHNDFKALKYSHPK----ELTRDTSKIPL 226

Query: 128 SIARRKHPSS-RNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVY 171
              +   P +    L  L K      I +  +S H ++ D+    ++Y
Sbjct: 227 LNQKGGFPENVAISLKRLAKELLHKDIQV-GKSGHCSVEDARTTMELY 273


>gi|317121892|ref|YP_004101895.1| hypothetical protein Tmar_1055 [Thermaerobacter marianensis DSM
           12885]
 gi|315591872|gb|ADU51168.1| hypothetical protein Tmar_1055 [Thermaerobacter marianensis DSM
           12885]
          Length = 586

 Score = 39.8 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 45/139 (32%), Gaps = 6/139 (4%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +  D+ETTGL  +   R    G           R+ +    P        AL +      
Sbjct: 138 LFLDLETTGLAVAAGHRPFLAGLAWFDRVGANGRSREEDSGPGDPGAGDLALVVEQYLVP 197

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTL 127
            L+  P+    +         ++   +  N + FD   +    Q        P+   D L
Sbjct: 198 DLE--PATERAWLVAIARRVAEHPWLVTFNGRGFDWPMLATRWQWNRLPAPAPAAHFDLL 255

Query: 128 SIARRKH--PSSRNDLNSL 144
             ARR    P  R +L +L
Sbjct: 256 YPARRLWAGPGQRVNLRAL 274


>gi|302498660|ref|XP_003011327.1| hypothetical protein ARB_02385 [Arthroderma benhamiae CBS 112371]
 gi|291174877|gb|EFE30687.1| hypothetical protein ARB_02385 [Arthroderma benhamiae CBS 112371]
          Length = 734

 Score = 39.8 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 66/206 (32%), Gaps = 24/206 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D E    +     +  I  V   D  +    F   + P          +  G+T E L
Sbjct: 358 ALDCEMCITEGGKSELTRISLVSW-DGERVLDEF---VKPEN-PIIDYLTRFSGVTKEKL 412

Query: 71  KDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
               +  S I  +       + +  I H+   D+  +           L    I+DT SI
Sbjct: 413 DPVTTNLSDIQQKLLRILTPR-SILIGHSLNSDLNALK----------LTHPFIVDTASI 461

Query: 130 ARR-KHPSSRNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGSQINFGFK 186
               + P  +  L  LC+RY G  I      H  + D+       + ++    +    + 
Sbjct: 462 YPHPRGPPLKPSLKWLCQRYLGREIQKGMAGHDPVEDAKA----VLDLVKQKCEKGEAWG 517

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPL 212
           TNE       ++   +   +K   P+
Sbjct: 518 TNEASTESIFQRLARSSRPVKSSGPV 543


>gi|255306817|ref|ZP_05350988.1| putative exonuclease [Clostridium difficile ATCC 43255]
          Length = 315

 Score = 39.8 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 63/181 (34%), Gaps = 29/181 (16%)

Query: 7   MRK-IVFDIETTGLDSKND-----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54
           M+  +  D E    +  +D            +I IG + + +   T   +   + P   K
Sbjct: 1   MKYKLFIDFE---FNILDDNKNKPKEYNGAELISIGGILVDNEFNTIDNYYSLVKPKYNK 57

Query: 55  N-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQ- 111
             S +   L  +    + + P+   +  +F+ +F + +   I +N   FD+  +    + 
Sbjct: 58  ILSNKCKNLTKLNQLDINNAPNLLYVMDDFYKWFCKFDDVTI-YNWGDFDIAGLLTSFRV 116

Query: 112 --------RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                    +    +D    I        +  S +  L ++ K + +      KH +L D
Sbjct: 117 YKYTGKCLELFNMMIDIQPFISQHITYNNRILSKQISLLNMKKIFSVK--GDIKHNSLSD 174

Query: 164 S 164
           +
Sbjct: 175 A 175


>gi|67525219|ref|XP_660671.1| hypothetical protein AN3067.2 [Aspergillus nidulans FGSC A4]
 gi|85542061|sp|O93845|DPOE_EMENI RecName: Full=DNA polymerase epsilon catalytic subunit A; AltName:
           Full=DNA polymerase II subunit A
 gi|40744462|gb|EAA63638.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
 gi|259485986|tpe|CBF83469.1| TPA: DNA polymerase epsilon catalytic subunit A (DNA polymerase II
           subunit A)(EC 2.7.7.7)
           [Source:UniProtKB/Swiss-Prot;Acc:O93845] [Aspergillus
           nidulans FGSC A4]
          Length = 2207

 Score = 39.8 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 14/116 (12%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     DS  D+I+ I   ++   +  TNR      +        PE    
Sbjct: 256 LAFDIETTKLPLKFPDSVIDQIMMISYMIDGQGFLITNREIVSEDIDDFEYTPKPEYSG- 314

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAK-FDVGFINAELQRINKD 116
                  + ++P+  ++   F++   E     IA +N   FD  F+ A    +  D
Sbjct: 315 ----PFMIFNEPNERAVIERFFEHIKEAKPTVIATYNGDFFDWPFVEARASVLGID 366


>gi|325068353|ref|ZP_08127026.1| Exonuclease RNase T and DNA polymerase III [Actinomyces oris K20]
          Length = 210

 Score = 39.8 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 26/176 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-- 57
           M   + +  +  D E TGLD   D +IE+  V    +         V + P         
Sbjct: 8   MTTSDPL--VWIDCEMTGLDQSADALIEVAVVVTDYELKPLAEGIDVLIKPPAAALEQMD 65

Query: 58  -EALKLH---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINA 108
                +H   G+    L+D  +  +  +   D+        + A+   ++   D  F+  
Sbjct: 66  DYVRTMHTSSGLL-AALEDGVTMETARTTALDYVTSLVPEPRTAQLAGNSVGTDKAFLAR 124

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++  + K        + +L  +A+R +P +        K+ G        H AL D
Sbjct: 125 DMPDLIKHLHYRIVDVSSLKELAKRWYPRTFFH---APKKAG-------GHRALAD 170


>gi|257066416|ref|YP_003152672.1| exonuclease-like protein [Anaerococcus prevotii DSM 20548]
 gi|256798296|gb|ACV28951.1| exonuclease-like protein [Anaerococcus prevotii DSM 20548]
          Length = 301

 Score = 39.8 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYS 38
          +I+ DIETTGLDS  D ++ +G +E +D  
Sbjct: 17 EIILDIETTGLDSSIDSLVLLGIIEKIDGK 46


>gi|159901614|ref|YP_001547860.1| hypothetical protein Haur_5104 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894653|gb|ABX07732.1| hypothetical protein Haur_5104 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 320

 Score = 39.8 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 13/128 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++  ++TTG D  +  I+E+G ++           Q  + P      P A+ LHG T   
Sbjct: 142 VIVALKTTGDD--DPDILELGVIDHTGMVL----MQQRVTPLWEPEPP-AVALHGSTLAM 194

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSRIIDT 126
             D P  + +        + +    +A   + D+  +   L   + DP   LD +   D 
Sbjct: 195 GGDAPDLTEVVPALAAIVHGK-TVLVA--EQDDIDTLINGLDMRDHDPRILLDHATWCDL 251

Query: 127 LSIARRKH 134
           L       
Sbjct: 252 LEPYSDWF 259


>gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT]
 gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT]
          Length = 951

 Score = 39.8 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 23/155 (14%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTF-QVFLCPNGR 53
           +  +   I  D ET  LD     ++ I             L + +  +   Q  L     
Sbjct: 349 KLQQADLIAVDTETDALDPMRANLVGISFALTNSEACYIPLAHKQAVKEMTQTDLFTESE 408

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           +N+ +         E +K++ +  +  ++        + + +  N K+D+        ++
Sbjct: 409 QNAEQF--------ELVKNQLNKETCLAQLKPLLENPSIQKVGQNIKYDLTIFANHHIQL 460

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
           N          DT+  +     + R+++ +L +RY
Sbjct: 461 NGV------CFDTMLQSYVLDSTGRHNMGALSERY 489


>gi|319896797|ref|YP_004134991.1| oligoribonuclease [Haemophilus influenzae F3031]
 gi|317432300|emb|CBY80653.1| oligoribonuclease [Haemophilus influenzae F3031]
          Length = 182

 Score = 39.4 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT 40
          +  +K   I  D+E TGL+ + +RIIEI  +        
Sbjct: 1  MSFDKQNLIWIDLEMTGLEPEKERIIEIATIMTDKNLNI 39


>gi|254432862|ref|ZP_05046565.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
 gi|197627315|gb|EDY39874.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
          Length = 990

 Score = 39.4 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 47/145 (32%), Gaps = 26/145 (17%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETT L+     ++ +G       ++       ++ P G +            D+
Sbjct: 387 PVALDTETTALNPFQAELVGLGVAWGEGLTEL-----AYI-PIGHQPPVA--------DD 432

Query: 69  FLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            L + P          + +    +           NAK+D   +      +         
Sbjct: 433 LLSETPTPPRQLPLDEVLTALAPWLASAEHPKALQNAKYDRLILLRHGLPLGGV------ 486

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKR 147
           ++DTL     +  ++++ L  L +R
Sbjct: 487 VMDTLLADYLRDANAKHGLEVLAQR 511


>gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus]
          Length = 924

 Score = 39.4 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 40/146 (27%), Gaps = 32/146 (21%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
             +   ++  D ETT  ++    ++ I                 +  P            
Sbjct: 348 HLDGFERLAIDTETTSTEAMWASLVGIAFSWEKGQG--------YYVPTP---------- 389

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                  L D     ++             + +  N K+D+  +     R       P  
Sbjct: 390 -------LPDGTPTETVLERLAPILRRAQRK-VGQNLKYDLVVL----ARHGVQVPPP-- 435

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
             DT+       P   ++L+ L ++Y
Sbjct: 436 YFDTMVAHYLIAPEEPHNLDVLARQY 461


>gi|260867489|ref|YP_003233891.1| putative exonuclease [Escherichia coli O111:H- str. 11128]
 gi|257763845|dbj|BAI35340.1| putative exonuclease [Escherichia coli O111:H- str. 11128]
          Length = 821

 Score = 39.4 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 27/169 (15%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALKLHGITDE 68
            D+ET G +  +  II IGA+            F   +     G     + +K       
Sbjct: 645 IDLETMGKNP-DAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIK-----WW 698

Query: 69  FLKDK--------PSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINAELQRINKD 116
             ++                 +  +F +E + E+      + A FD   +    +R    
Sbjct: 699 QSREAQSAIMTDEIPLDDALLQLREFIDENSGEFFVQVWGNGANFDNTILRRSYERQGIP 758

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
              P R  +   +          D ++   R  I      +H AL D+ 
Sbjct: 759 --CPWRYYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDAR 801


>gi|302893304|ref|XP_003045533.1| hypothetical protein NECHADRAFT_79694 [Nectria haematococca mpVI
           77-13-4]
 gi|256726459|gb|EEU39820.1| hypothetical protein NECHADRAFT_79694 [Nectria haematococca mpVI
           77-13-4]
          Length = 549

 Score = 39.4 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 88  NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLSIARRKHPSSRNDLNSLCK 146
            ++    + H  + ++   +A    +      P+   IDTL +A       R  L +L  
Sbjct: 388 KDRPVILVGHAVENELDVCHA----LGYALAHPNIDVIDTLLVANEVFQPWRCSLGALLH 443

Query: 147 RYGITISHRSKHGALLDS 164
           R    ++    H A  D+
Sbjct: 444 RLRCPVA--RLHSAGNDA 459


>gi|323175640|gb|EFZ61234.1| exonuclease family protein [Escherichia coli 1180]
          Length = 821

 Score = 39.4 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 27/169 (15%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN--GRKNSPEALKLHGITDE 68
            D+ET G +  +  II IGA+            F   +     G     + +K       
Sbjct: 645 IDLETMGKNP-DAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIK-----WW 698

Query: 69  FLKDK--------PSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINAELQRINKD 116
             ++                 +  +F +E + E+      + A FD   +    +R    
Sbjct: 699 QSREAQSAIMTDEIPLDDALLQLREFIDENSGEFFVQVWGNGANFDNTILRRSYERQGIP 758

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
              P R  +   +          D ++   R  I      +H AL D+ 
Sbjct: 759 --CPWRYYNDRDVRTIVELGKAIDFDA---RTAIPFEGE-RHNALDDAR 801


>gi|296824674|ref|XP_002850692.1| oligoribonuclease [Arthroderma otae CBS 113480]
 gi|238838246|gb|EEQ27908.1| oligoribonuclease [Arthroderma otae CBS 113480]
          Length = 188

 Score = 39.4 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLC-PNGR--KNS 56
           ++++    +  D E TGLD  ND+I++I                F+  +  P     + +
Sbjct: 3   LQRSSDPLVWVDCEMTGLDPANDKILQICCFITDAQLNLLEPAGFEAVVHQPQDVLDRMN 62

Query: 57  PEALKLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINA 108
              +  H   G+T   L    +     S+   +       ++ A    ++   D  F+  
Sbjct: 63  AWCIDTHGRSGLTAASLSSTTTAEEAASDLLAYIKRYVPKQRTALLAGNSVHADRAFLAQ 122

Query: 109 E 109
           +
Sbjct: 123 Q 123


>gi|82594269|ref|XP_725352.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480331|gb|EAA16917.1| unnamed protein product-related [Plasmodium yoelii yoelii]
          Length = 826

 Score = 39.4 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E       +  + ++  V+          +  ++ P+ +  +   L   GI +  LK
Sbjct: 372 IDCEMCETSGGHRELTKVTIVDAYMNII----YDSYVLPDNKITNYLTLYS-GINENTLK 426

Query: 72  D-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-LSI 129
           +     + + +E  +  N + +  I H+ + D+  +           +    IIDT +  
Sbjct: 427 NVNTKLTDVQNELKNILNNK-SILIGHSLENDLHALK----------IKHDYIIDTSVIY 475

Query: 130 ARRKHPSSRNDLNSLCK-RYGITISHRSKHGALLDSHLLSDVYIKM 174
           +   +   +  L +L K    IT+   + H ++ D+ +   +++ +
Sbjct: 476 SNNYYNFLKPSLFNLSKKHLNITMERENGHNSIDDARI--SMFLAL 519


>gi|302062272|ref|ZP_07253813.1| oligoribonuclease [Pseudomonas syringae pv. tomato K40]
          Length = 107

 Score = 39.4 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 3  RKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
           +NK   I  D+E TGLD   D IIE+  +
Sbjct: 1  MQNKQNLIWIDLEMTGLDPDTDVIIEMATI 30


>gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
 gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
          Length = 939

 Score = 39.4 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 49/149 (32%), Gaps = 23/149 (15%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D ETT L++   +I+ +         +  + F  ++ P          +L        
Sbjct: 356 AIDTETTSLNAMEAKIVGVSFAYAEKKDQAWQNFAAYV-PLTHDYDGAPEQL-------- 406

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                   + ++          + +  N K+D        +    +        DT+  +
Sbjct: 407 ----PIQEVLAKLKPLLENPAIKKVGQNFKYDW----HIFKNAGIEV--QGMAYDTMLES 456

Query: 131 RRKHP-SSRNDLNSLCKRYGITISHRSKH 158
              +  ++R++++ L   Y   ++H + H
Sbjct: 457 YCFNSVATRHNMDDLALTY---LNHSTIH 482


>gi|331675536|ref|ZP_08376284.1| putative exonuclease VIII, ds DNA exonuclease encoded by prophage
           [Escherichia coli TA280]
 gi|331067310|gb|EGI38717.1| putative exonuclease VIII, ds DNA exonuclease encoded by prophage
           [Escherichia coli TA280]
          Length = 191

 Score = 39.4 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 65/201 (32%), Gaps = 50/201 (24%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC----------PNGRKN 55
           M  ++ D+ET G + K+  I+ IGAV    +     + F   +           P+G   
Sbjct: 2   MNNLMIDLETMGKN-KDAPIVSIGAVFFTPETGDIGQEFYTVVSLESAMGQGATPDGDTI 60

Query: 56  ------SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVG 104
                 SPEA     I D       S S   SE   F N   A     +   + A FD  
Sbjct: 61  LWWLKQSPEARAAICIDDTL-----SISDALSELNHFINRHAANTKYLKVWGNGATFDNV 115

Query: 105 FINAELQRIN-KDPLDPSRIID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            +    +R     P       D     TL  +    P           +  +      +H
Sbjct: 116 ILRGAYERAGQICPWAYWNDHDVRTIVTLGRSIGFDP-----------KMDMPFDGE-RH 163

Query: 159 GALLDSHLLSD----VYIKMM 175
            AL D+   +     ++ K++
Sbjct: 164 NALADARHQAKYVSAIWQKLI 184


>gi|75812739|ref|YP_320356.1| DNA polymerase I-like [Anabaena variabilis ATCC 29413]
 gi|75705495|gb|ABA25167.1| DNA polymerase I-like protein [Anabaena variabilis ATCC 29413]
          Length = 265

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 33/132 (25%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            ++ +I  DIET G++    RI  IG ++   YS        F+                
Sbjct: 46  QELSQIFVDIETAGINPFESRIYAIGCMDSRGYSTI------FMD--------------- 84

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HN-AKFDVGFINAELQRINKD-PLDPS 121
                     S + I ++F +  +++N + I  +N   FD+ FI           P   +
Sbjct: 85  ---------ISEAKILTKFINHLSKRNPDVIFTYNGMAFDIPFIITRCNLHGIKHPFQVA 135

Query: 122 RIIDTLSIARRK 133
               T+  A+ +
Sbjct: 136 SKSRTIRTAQVR 147


>gi|219815945|gb|ACL37071.1| truncated DNA polymerase I [uncultured bacterium]
          Length = 557

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 32/140 (22%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +I FD ETTG  + +  ++ +         KT   +  ++      N  +AL        
Sbjct: 372 EISFDTETTGTYAHDVELVGLSFCY-----KTGEGY--YIPCPPSANETQAL-------- 416

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
                         F   F++ + +WI  N K+D+  +           L   +  DT+ 
Sbjct: 417 -----------LQHFKPLFDDASKKWIGQNVKYDLIVLKW------YGVLLAGQFFDTML 459

Query: 129 IARRKHPSSRNDLNSLCKRY 148
                 P  R  ++ L  +Y
Sbjct: 460 AHYLIEPEGRRGMDYLSAQY 479


>gi|145340512|ref|XP_001415367.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575590|gb|ABO93659.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 228

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 9/112 (8%)

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNS 143
             +  +    ++ H  K D   IN          + P ++IDT+ +   K    +  L  
Sbjct: 103 LRYLIDAGCIFVGHGLKQDFKMINIV--------VPPEQVIDTVELFHFK-RQRKLSLKF 153

Query: 144 LCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKE 195
           L             H ++ D+     +Y K +   ++  F  +  E   F +
Sbjct: 154 LATYLLGEDIQGETHDSIEDARTAVKLYEKYLDLQARGEFESELLEIYRFGK 205


>gi|83766085|dbj|BAE56228.1| unnamed protein product [Aspergillus oryzae]
          Length = 2248

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 14/116 (12%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     DS  D+I+ I   ++   +  TNR      +        PE    
Sbjct: 300 LAFDIETTKLPLKFPDSVIDQIMMISYMIDGQGFLITNREIVSEDINDFEYTPKPEYYG- 358

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAK-FDVGFINAELQRINKD 116
                  + ++P   S+   F+    E     IA +N   FD  F+ A    +  D
Sbjct: 359 ----PFMIFNEPDERSVLERFFGHIKEAKPTVIATYNGDFFDWPFVEARASVLGID 410


>gi|296284438|ref|ZP_06862436.1| DNA-directed DNA polymerase B [Citromicrobium bathyomarinum JL354]
          Length = 1045

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 13/88 (14%)

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG------------AL 161
            ++P+     ID  ++A     +    L SLC+  G+  S                  AL
Sbjct: 193 KREPIQRGHFIDCKTLANALL-ARSFSLASLCEALGVENSKIEYSDFEAPISDDFIGYAL 251

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNE 189
            D     + Y +++    Q+     + E
Sbjct: 252 RDVQATWECYCELIERFDQLALAGTSPE 279


>gi|222628577|gb|EEE60709.1| hypothetical protein OsJ_14204 [Oryza sativa Japonica Group]
          Length = 142

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
            D+E TGLD   DRI+EI  +   D   T R
Sbjct: 74  IDLEMTGLDITKDRILEIACIIT-DGKLTKR 103


>gi|195122394|ref|XP_002005696.1| GI18935 [Drosophila mojavensis]
 gi|193910764|gb|EDW09631.1| GI18935 [Drosophila mojavensis]
          Length = 1238

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 17/106 (16%)

Query: 84   WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN---D 140
              F  +    ++ H  K D   IN          +   +IIDT+           +    
Sbjct: 1127 LKFLVDVGVIFVGHGLKNDFRVINIY--------VPSDQIIDTV----HLFHLPHHRMVS 1174

Query: 141  LNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            L  L   + G  I   + H ++ D+     +Y   +   ++  F  
Sbjct: 1175 LRFLAWHFLGTKIQSET-HDSIEDARTTLQLYKHYLQLQAEKKFTL 1219


>gi|126658596|ref|ZP_01729743.1| DNA polymerase I [Cyanothece sp. CCY0110]
 gi|126620183|gb|EAZ90905.1| DNA polymerase I [Cyanothece sp. CCY0110]
          Length = 583

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 29/138 (21%)

Query: 16  TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPS 75
           TT L+ +   ++ IG         T+  +     P G K                 ++  
Sbjct: 1   TTDLNPRQADLVGIGCCW--GNQPTDIAY----IPIGHKQ---------------GNQLK 39

Query: 76  FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHP 135
              +          +N   +  N KFD   +  + Q IN D      + DT+  +   HP
Sbjct: 40  KQKVLDSLRTILESKNYPKVFQNTKFDR--LIFKHQGINLD----GVVFDTMLASYVLHP 93

Query: 136 SSRNDLNSLCKRY--GIT 151
              + L+ LC++Y  GIT
Sbjct: 94  EKSHKLSELCEQYLEGIT 111


>gi|47218928|emb|CAF98126.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 236

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 38 SKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE 89
           +    F  ++ P      S    +L GIT   ++         S F  +  E
Sbjct: 20 GEVESEFHAYVQPQEHPILSAFCTELTGITQTQVEAAIPLHICLSRFGRWLQE 72



 Score = 37.5 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
           T+ + +  +      LN   +  GI  + R  H  L D+   + +  +MM  G
Sbjct: 174 TVCLFQLFYDRKPRGLNGALQDLGIQFAGRE-HSGLDDARNTAGLAARMMRDG 225


>gi|333028317|ref|ZP_08456381.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
 gi|332748169|gb|EGJ78610.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
          Length = 239

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 17/161 (10%)

Query: 17  TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD---- 72
           TG  +  DR++   AV + D++     F+ +L   G      A    G++++ ++     
Sbjct: 16  TGPRTAKDRVLS-AAVVVQDHADAPPRFERWLVCPGVPVPRSARAALGLSEDHIRRNGRW 74

Query: 73  -KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI------NKDPLDPSRIID 125
             P    +     +         +  +A   +  ++ EL+R        +    P R++D
Sbjct: 75  PAPVMDEVARSLHEH-ALTGRPLVVLDAPATLALLDRELRRHRATSLTERLGPKPLRVLD 133

Query: 126 --TLSIARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALL 162
              L     +      +L SLC  Y +           AL 
Sbjct: 134 PGLLDTQLDRFRKGSRELESLCSVYRVPGGDPRDPAARALA 174


>gi|126334897|ref|XP_001375777.1| PREDICTED: similar to poly(A)-specific ribonuclease [Monodelphis
           domestica]
          Length = 638

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 34/136 (25%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +      + L   + + T 
Sbjct: 262 EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTIHQFYCPLPEDLSEFKEVTTC 317

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 318 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKEAPFNPPKVESAEGFPSYDTASEQLH 377

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 378 EAGYDAYITGLCFISM 393


>gi|296114160|ref|ZP_06832815.1| Ycg4D [Gluconacetobacter hansenii ATCC 23769]
 gi|295979236|gb|EFG85959.1| Ycg4D [Gluconacetobacter hansenii ATCC 23769]
          Length = 312

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 16/126 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +V ++ETTG + + D++++I   +          F  F  P+      +A   H +T +
Sbjct: 140 YLVLNVETTGRE-EQDQVLQITITDHKGNLL----FNRFCQPS-VSIQKQASDHHHMTKD 193

Query: 69  FLKDK--------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                         ++  I+ E     +++     A N  FD   +    +  N D    
Sbjct: 194 IFTRATLMGNQSVTTWQDIYPEVVKHLSDRTVY--AFNVTFDAQMVLNTCKAFNLDTDWM 251

Query: 121 SRIIDT 126
                 
Sbjct: 252 KTCHWV 257


>gi|224070573|ref|XP_002192839.1| PREDICTED: exonuclease NEF-sp [Taeniopygia guttata]
          Length = 839

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 25/169 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL- 70
            D E     +K + +  +  V+       N      + P     +    +  GIT + L 
Sbjct: 293 LDCEMC-QTAKGNEVTRVSLVDARGQCLLNE----LVKPESTVLNYR-TRFSGITKKMLL 346

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             K   S I +         +A  + H+   D+  +           + PS I  +L  A
Sbjct: 347 PVKTRLSDIQTRLKKIL-PHDAVLVGHSLNSDLQALEM---------IHPSVIDTSLLFA 396

Query: 131 RRKHPSSRNDLNSLCKR-YG--ITISHRSKHGALLDSHL---LSDVYIK 173
           R +    R  L  L K   G  I    +  H    D+     L+  +I+
Sbjct: 397 RSE--GRRFKLKFLAKAVLGKEIQCEQKLGHDPTEDARAALELAQFFIE 443


>gi|268531238|ref|XP_002630745.1| Hypothetical protein CBG02435 [Caenorhabditis briggsae]
 gi|187037415|emb|CAP24081.1| hypothetical protein CBG_02435 [Caenorhabditis briggsae AF16]
          Length = 417

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 22/130 (16%)

Query: 46  VFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
            F+ P GR       +  G+T+ FL    S        +   N +N   + H+   D+  
Sbjct: 274 FFIKPTGRILDLN-TQYSGVTEGFLDIAVSLEEAHRILFHHIN-ENTILVGHHLSNDLKV 331

Query: 106 INAELQRINKDPLDPSRIIDT--LSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGA 160
           +           L  + ++DT  L  +R ++P     L  L KR+    I       H +
Sbjct: 332 LK----------LIHTNVVDTAVLFESRGRYP----SLKVLAKRHLHKDIHNEVGG-HDS 376

Query: 161 LLDSHLLSDV 170
             D+    ++
Sbjct: 377 TEDASTCIEL 386


>gi|302518004|ref|ZP_07270346.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
 gi|302426899|gb|EFK98714.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
          Length = 242

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 57/161 (35%), Gaps = 17/161 (10%)

Query: 17  TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD---- 72
           TG  +  DR++   AV + D++     F+ +L   G      A    G++++ ++     
Sbjct: 19  TGPRTAKDRVLS-AAVVVQDHADAPPRFERWLVCPGVPVPRSARAALGLSEDHIRRNGRW 77

Query: 73  -KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI------NKDPLDPSRIID 125
             P    +     +         +  +A   +  ++ EL+R       ++    P R++D
Sbjct: 78  PAPVMDEVARSLHEH-ALTGRPLVVLDAPATLALLDRELRRHRATSLTDRLGPKPLRVLD 136

Query: 126 --TLSIARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALL 162
              L     +      +L SLC  Y +           AL 
Sbjct: 137 PGLLDTQLDRFRKGSRELESLCSVYRVPGGDPRDPAARALA 177


>gi|242786100|ref|XP_002480736.1| DNA polymerase epsilon, catalytic subunit A/POL2, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218720883|gb|EED20302.1| DNA polymerase epsilon, catalytic subunit A/POL2, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 2222

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 66/209 (31%), Gaps = 49/209 (23%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D+  D+I+ I   ++   +  TNR      +        PE    
Sbjct: 283 LAFDIETTKLPLKFPDAVIDQIMMISYMIDGNGFLITNREIVSEDINDFEYTPKPEY--- 339

Query: 63  HGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIA-HNAK-FDVGFINAELQRINKDPL- 118
           +G    F+  ++P    +   F+    E     IA +N   FD  F+ A    +  D   
Sbjct: 340 NG---PFVIFNEPDERHVLERFFSHIKEAKPTVIATYNGDFFDWPFVEARASVLGIDMYA 396

Query: 119 --------------DPSRIIDTLSIARR--KHPSSRNDLNS----------------LCK 146
                         D    +D  +   R    P     L +                L  
Sbjct: 397 EIGFKKNSEDIYQSDHCAHMDCFAWVNRDSYLPQGSRGLKAVTVAKLGYDPDELDPELMT 456

Query: 147 RYGITISHRSKHGALLDSHLLSDVYIKMM 175
           RY           ++ D+     +Y+K +
Sbjct: 457 RYARERPQTLAEYSVSDAVATYYLYMKYI 485


>gi|224417856|ref|ZP_03655862.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
 gi|253827195|ref|ZP_04870080.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491]
 gi|313141399|ref|ZP_07803592.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
 gi|253510601|gb|EES89260.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491]
 gi|313130430|gb|EFR48047.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
          Length = 896

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 45/182 (24%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETT LD +  +I+                F   +        P A    G     ++
Sbjct: 335 FDTETTSLDVRKAKIVG---------------FSFSVNGVDCYYIPIAHNYLG-----VE 374

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
            + S           F  Q    I HN K+D+  +       +    D S++ D++ +A 
Sbjct: 375 SQVSLECARECIEQIFQSQ--YVIGHNLKYDLEILKTNF---DFVLEDFSKVRDSMLLAW 429

Query: 132 RKHPSSRNDLNSLCKRY-------------------GITISHRSKHGALLDSHLLSDVYI 172
                +  +L+ L K+Y                    I I H  ++ A  D+     +Y 
Sbjct: 430 LLQSDTLCNLDFLMKKYFNHEMIHYKDIVGKNENFSNILIQHACEY-ASEDAAACYQLYF 488

Query: 173 KM 174
           K+
Sbjct: 489 KL 490


>gi|254584812|ref|XP_002497974.1| ZYRO0F17776p [Zygosaccharomyces rouxii]
 gi|186929008|emb|CAQ43333.1| Uncharacterized protein YDR514C and Good for full DBP5 activity
           protein 2 [Zygosaccharomyces rouxii]
 gi|238940867|emb|CAR29041.1| ZYRO0F17776p [Zygosaccharomyces rouxii]
          Length = 468

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 13/93 (13%)

Query: 93  EWIAHNAKFDVGFI-----------NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDL 141
            ++ HN   D+ ++             +    N      + ++DT  + R  + +   +L
Sbjct: 287 AFVGHNLHGDLKWLRMLGVNIPNDNQMDFSLTNLRENKQTYVLDTEKLYRSCYGNFGGNL 346

Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + + + I   H   H A  D+H    + + M
Sbjct: 347 GRILRLFRIP--HAFLHNAGNDAHYTLQLLMCM 377


>gi|254253593|ref|ZP_04946910.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
           dolosa AUO158]
 gi|124898238|gb|EAY70081.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
           dolosa AUO158]
          Length = 736

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    R++ +                  + P      P A        +  
Sbjct: 346 AFDTETTALDPMVARLVGL---------------SFSVEPGKAAYLPVA----HRGPDM- 385

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++     + +    +    +   +  + K+D   +      +N          DTL  +
Sbjct: 386 PEQLPLDEVLARLKPWLESADRRKVGQHLKYDAQVLANYGIELNGIE------HDTLLES 439

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  GI
Sbjct: 440 YVLESHRTHDMDSLALRHLGI 460


>gi|50304589|ref|XP_452250.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641383|emb|CAH01101.1| KLLA0C01232p [Kluyveromyces lactis]
          Length = 366

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGI 150
             + H    D+ ++ +   R+     +  + +DT  +    +    +   L +LC+    
Sbjct: 245 ALVGHGISGDISWLESLDIRL----PNNVQTLDTQKLFENMYGRQSSLKRLLNLCR---- 296

Query: 151 TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
            I H   H A  DS+    + + M   G++I     
Sbjct: 297 -IPHSYLHNAGNDSYYTLQLLLSMCDIGTRIKLDLD 331


>gi|300120951|emb|CBK21193.2| unnamed protein product [Blastocystis hominis]
          Length = 151

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 56/160 (35%), Gaps = 22/160 (13%)

Query: 14  IETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD- 72
           +ET G   K D   E+  V L+           F+ P G+       +  G+T E L   
Sbjct: 2   VETEG---KRD---EVARVSLVSTKGVL--LDEFVLPEGKITDYR-TQYSGVTAEHLASC 52

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132
           K +F SI    +    +  +  + H+ + D+  +           L  S IIDT      
Sbjct: 53  KNTFESIQQRVYSEMTKIPSILVGHSLENDLAVLK----------LVHSHIIDTAVRYTH 102

Query: 133 KHPSSRNDLNSL-CKRYGITISHRSK-HGALLDSHLLSDV 170
             P  ++ L  L       +I    K H    D+    D+
Sbjct: 103 PTPGYKHSLRYLVANYLNRSIQGGKKGHDPREDAKAALDL 142


>gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
 gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
          Length = 930

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 58/184 (31%), Gaps = 54/184 (29%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FD ET+G +              ++      +F        +      + ++G +D+
Sbjct: 340 YIAFDTETSGKNV-------------MESDLVGVSFS------PKAGIAYYVPINGFSDD 380

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             KD      +  E      E   + IAHNAKFD   +     R+   PL      DT S
Sbjct: 381 GTKD------LLDELSPLL-EGGPKKIAHNAKFDYMALYKHGIRV--SPL----YFDT-S 426

Query: 129 IARRKHPSSRNDLNSLCK-RYGI-------------------TISHRSKHG-ALLDSHLL 167
           IA      +   L  L   R GI                    +S       A  D+ + 
Sbjct: 427 IAAFLLNETSVGLKDLAATRLGIQMTTIDSLIGKGKNQKTMLEVSVDECARYACADADMT 486

Query: 168 SDVY 171
             ++
Sbjct: 487 FRLF 490


>gi|87124844|ref|ZP_01080692.1| DNA polymerase I [Synechococcus sp. RS9917]
 gi|86167723|gb|EAQ68982.1| DNA polymerase I [Synechococcus sp. RS9917]
          Length = 996

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 58/148 (39%), Gaps = 17/148 (11%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           ++  + +  D ET+ L+    +++ +G        + +     ++ P G + S E     
Sbjct: 385 RDPAQPVALDTETSDLNPFKAQLVGVGVCW---GPELDDL--AYI-PVGHRPSAEPS--- 435

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            + D     +    ++ ++   +           NAK+D   +      +         +
Sbjct: 436 -LEDSSAIQQLPLDTVLAQLAPWLASAEHPKALQNAKYDRLILLRHGLPLGGV------V 488

Query: 124 IDTLSIARRKHPSSRNDLNSLCKR-YGI 150
           +DTL     +  ++++ L+++ +R YGI
Sbjct: 489 MDTLLADYLRDAAAKHGLDAMAERDYGI 516


>gi|317128912|ref|YP_004095194.1| Tetratricopeptide TPR_1 repeat-containing protein [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473860|gb|ADU30463.1| Tetratricopeptide TPR_1 repeat-containing protein [Bacillus
           cellulosilyticus DSM 2522]
          Length = 420

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 43/139 (30%), Gaps = 32/139 (23%)

Query: 10  IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD ETTGL     + I  IG   +L            L P+        L        
Sbjct: 106 LFFDTETTGLSTGAGNSIFLIGYARVLKEGIEV---TQHLLPDPASEVAFMLGF------ 156

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFI--NAELQRINKDPLDPSRIID 125
                        +F     E++   +++N   FD   +       R     L     ID
Sbjct: 157 -----------LKDF-----EEDDILVSYNGKAFDWPQVKSRHAFVRDRVPKLPKFGHID 200

Query: 126 TLSIARRKHPSSRNDLNSL 144
            L  ARR     ++DL S 
Sbjct: 201 LLHAARRLW---KHDLPSC 216


>gi|216114|gb|AAA03732.1| DNA polymerase [Bacillus phage SPO1]
          Length = 924

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 34/144 (23%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD-- 67
           +V D+ET   +           +E +   KT  T + +         P+ + + G++D  
Sbjct: 209 VVIDLETVKTNPF---------IEKVTMKKT--TLEAY----PMSQQPKIVGI-GLSDRS 252

Query: 68  -----------EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
                      E L       +I          ++ E+IAHN KFD+ ++     R + D
Sbjct: 253 GYGCAIPLYHRENLMKGNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWL-----RASLD 307

Query: 117 PLDPSRIIDTLSIARRKHPSSRND 140
                 I DT+ I    +   R  
Sbjct: 308 IYLDISIWDTMLIHIIDYRGERYS 331


>gi|227327116|ref|ZP_03831140.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 929

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 78/242 (32%), Gaps = 59/242 (24%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET GLD+    +I +                  + P      P A   H   D   
Sbjct: 354 AFDTETDGLDTLTANLIGL---------------SFAIKPGEAAYLPLA---HDYLDA-- 393

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++   + + + F     ++    I  N KFD G +         D        DT+  +
Sbjct: 394 PEQLDRTKVLALFKPLLEDEKLLKIGQNLKFDKGVMQR------YDIDLRGIAFDTMLES 447

Query: 131 RRKHP-SSRNDLNSLCKRY----------------------GITISHRSKHGALLDSHLL 167
                 + R+D++SL +RY                       I +     + A  D+ + 
Sbjct: 448 YVLDSVAGRHDMDSLAERYLSHKTITFEEIAGKGKNQLTFNQIALEQAGPY-AAEDADVT 506

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKE-EKKTVPNISLLKRDKPLFTRITKEELDEHDK 226
             ++ K+            T+  + F+  +   VP +S ++R   L        L EH K
Sbjct: 507 LHLHQKLWGKLQP-----HTDLCQVFQTIDMPLVPVLSRIERTGVLIDPAI---LAEHSK 558

Query: 227 TI 228
            +
Sbjct: 559 RL 560


>gi|21672814|ref|NP_660881.1| oligoribonuclease [Buchnera aphidicola str. Sg (Schizaphis
          graminum)]
 gi|25008877|sp|Q8K909|ORN_BUCAP RecName: Full=Oligoribonuclease
 gi|21623465|gb|AAM68092.1| hypothetical oligoribonuclease [Buchnera aphidicola str. Sg
          (Schizaphis graminum)]
          Length = 184

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +  N    I  D+E TGL+S+  RIIEI  V
Sbjct: 1  MTINNENLIWIDLEMTGLNSEIHRIIEIATV 31


>gi|238916864|ref|YP_002930381.1| hypothetical protein EUBELI_00933 [Eubacterium eligens ATCC 27750]
 gi|238872224|gb|ACR71934.1| hypothetical protein EUBELI_00933 [Eubacterium eligens ATCC 27750]
          Length = 370

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 42/126 (33%), Gaps = 27/126 (21%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
              FDIETTG     + +  IGAV   +    +   Q         +S EA         
Sbjct: 27  ICFFDIETTGFSRNYNIVYLIGAVYFRNG--ISHYLQWL----AESDSDEAY-------- 72

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-LDPSRIIDT 126
                     I S F DF  + +   I  N   FD+ FI      +N    L     +D 
Sbjct: 73  ----------ILSAFNDFLKDFHT-LIHFNGDAFDIPFITERAAHLNVALDLSHLESLDL 121

Query: 127 LSIARR 132
              AR+
Sbjct: 122 YKTARK 127


>gi|114560318|ref|XP_001166489.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 331

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 11/105 (10%), Positives = 31/105 (29%), Gaps = 5/105 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   K   +  +    +++Y+  +  +  ++ P          +  GI  
Sbjct: 177 KMVAIDCEMVGTGPKGH-VSSLARCSIVNYNG-DVLYDEYILPPCHIVDYR-TRWSGIRK 233

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           + + +   F     +            + H    D   +     +
Sbjct: 234 QHMVNATPFKIARGQILKIL--TGKIVVGHAIHNDFKALQYFHPK 276


>gi|114560305|ref|XP_001166526.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 323

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 11/105 (10%), Positives = 31/105 (29%), Gaps = 5/105 (4%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D E  G   K   +  +    +++Y+  +  +  ++ P          +  GI  
Sbjct: 177 KMVAIDCEMVGTGPKGH-VSSLARCSIVNYNG-DVLYDEYILPPCHIVDYR-TRWSGIRK 233

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           + + +   F     +            + H    D   +     +
Sbjct: 234 QHMVNATPFKIARGQILKIL--TGKIVVGHAIHNDFKALQYFHPK 276


>gi|77359452|ref|YP_339027.1| oligoribonuclease [Pseudoalteromonas haloplanktis TAC125]
 gi|123587965|sp|Q3IG97|ORN_PSEHT RecName: Full=Oligoribonuclease
 gi|76874363|emb|CAI85584.1| oligoribonuclease [Pseudoalteromonas haloplanktis TAC125]
          Length = 181

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +  NK   I  D+E TGL+ + D+I+EI  V
Sbjct: 1  MNINKSNLIWLDLEMTGLEPETDKILEIATV 31


>gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
 gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
          Length = 937

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 45/157 (28%), Gaps = 49/157 (31%)

Query: 10  IVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  D ET  LDS   R++ +             L +  T+                    
Sbjct: 357 VAVDTETASLDSVTGRLVGVSLSTGAGKACYIPLGHGGTD-------------------- 396

Query: 62  LHGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                     +KP   +           F +     + HN K+D+G +           +
Sbjct: 397 -------MFAEKPEQIAMGDALERLGALFADDAVLKVGHNLKYDIGVLAQH-------GV 442

Query: 119 DPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISH 154
             +   DTL ++         + L+ L K   + + H
Sbjct: 443 TVAPYDDTLLMSFALDAGKHQHGLDELAK---LHLDH 476


>gi|313213985|emb|CBY40780.1| unnamed protein product [Oikopleura dioica]
          Length = 143

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 7/78 (8%)

Query: 37  YSKTNRTFQVFLCPN-----GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
              + + F+    P       R +      + GI    L  +P  S + +E       Q 
Sbjct: 52  GKLSGKHFKKLYSPPIDRTLDRPSIDLRTWITGIRPGDLDFQPLASQVLAEVRQII--QG 109

Query: 92  AEWIAHNAKFDVGFINAE 109
              + H+ + D+  +   
Sbjct: 110 KYLVGHSIEHDLCVLQHF 127


>gi|300788911|ref|YP_003769202.1| oligoribonuclease [Amycolatopsis mediterranei U32]
 gi|299798425|gb|ADJ48800.1| oligoribonuclease [Amycolatopsis mediterranei U32]
          Length = 191

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 27/162 (16%)

Query: 17  TGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNS--PEAL-KLH---GITDEF 69
           TGLD   + +IEI A V   + +       + +  +  K +  PE + ++H   G+T+E 
Sbjct: 2   TGLDLGKEALIEIAALVTDAELNVLGDGVDIVIHADEEKLAGMPEIVREMHAHSGLTEEV 61

Query: 70  LKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
            +   +         D+  E       A    ++   D GFI  ++  +  D     R++
Sbjct: 62  RRSTVTLEEAERRVLDYIREHVPEPGTAPLAGNSIATDRGFIARDMPAL--DAHLHYRMV 119

Query: 125 DTLSIA---RRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           D  S+    RR +P          + Y         H AL D
Sbjct: 120 DVSSVKELVRRWYP----------RIYYAKPEKGLAHRALAD 151


>gi|193848506|gb|ACF22697.1| exonuclease [Brachypodium distachyon]
          Length = 367

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 67/218 (30%), Gaps = 51/218 (23%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFN-------------EQ 90
           FQ ++ P     +    ++ GI  E+L+D            D                 +
Sbjct: 150 FQTYVKPT-APVTNYRYEVTGIRPEYLRDAMPLKLAQRRVQDILCNGEPLWKIRPRSYGR 208

Query: 91  NAEWIAHNAKFDVGFI----NAELQR--INKDPLDPSRIID----TLSIARR----KHPS 136
               + H    D+  +     A + R      PL  +  +      L+ A       +P 
Sbjct: 209 ARVLVGHGVDQDLERLGLEYPAFMIRDTAKYPPLMKTSKLSNPLKYLTQAYLGYVTPYPG 268

Query: 137 SRNDLNS------LCKRYGI-TISHRSKHGAL----LDSHLLSDVYIKMMVGGSQINFGF 185
             ++L++      + KR  +  I     H  +     D      +YI+M       ++  
Sbjct: 269 L-HNLSAPLVIFLMLKRLSVYPICRYDVHTGVQDPYEDCVAAMRLYIRMRSQAHPRDYAS 327

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223
            + E          V N     R + L  R++ EEL  
Sbjct: 328 GSGE----------VQNNYPAWRQREL-ERMSPEELLA 354


>gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 896

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 35/146 (23%)

Query: 11  VFDIETTGLDSKNDRII--EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            FD ET  L++    ++     A E   Y    +    +L        P+ L+L      
Sbjct: 322 AFDTETDSLNTYEANLVGLSFCAKEGRAYYIPLQ--HRYL------GVPQQLEL------ 367

Query: 69  FLKDKPSFSSIFSEFWD--FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                     I  +     F + Q ++ +AHN KFD   ++    +I       +++ DT
Sbjct: 368 ---------EIVLDILKPIFVDSQKSK-VAHNFKFDEKVLSKYGVKI------VNQVNDT 411

Query: 127 LSIARRKHPSSRNDLNSLCK-RYGIT 151
           + +A     S ++D++SL K   GI 
Sbjct: 412 MIMAYVLKSSGKHDMDSLSKEHLGIE 437


>gi|156388849|ref|XP_001634705.1| predicted protein [Nematostella vectensis]
 gi|156221791|gb|EDO42642.1| predicted protein [Nematostella vectensis]
          Length = 126

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
           +  F+ P+ R       K  GIT E L       + +  E       Q A    H+ + D
Sbjct: 31  YDTFVKPD-RPIIDYNTKYSGITAEMLDGVTVKLADVQKELQAII-PQGAIVAGHSLECD 88

Query: 103 VGFINAEL 110
           +  +    
Sbjct: 89  LKALKMAY 96


>gi|268568198|ref|XP_002647968.1| Hypothetical protein CBG23882 [Caenorhabditis briggsae]
          Length = 311

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 10  IVFDIETTGLDSKN---DRIIEIGA-VELLDYSKT--NRTFQVFLCPNGRKN-SPEALKL 62
           ++ D  TT  ++       II++   V  +       ++TF  F+CP      S    + 
Sbjct: 13  LILDFNTTCEENNYVYPTEIIQMSVSVLNIRDKLIREDQTFNRFVCPVINPVLSEYCARK 72

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            GI    +    +F  ++ +F  +  E       HN +    F            L P R
Sbjct: 73  TGIDQNSINTADTFPVVYDQFVAWLRE-------HNFQPSSIFRQWNNITSVFHILLPER 125

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
             D L       P      +     Y I I   + H A+  S  L+ +
Sbjct: 126 NYDNL-------PGETFV-DKASNYYNIEIIG-NAHNAVDKSTFLAKI 164


>gi|461960|sp|P30314|DPOL_BPSP1 RecName: Full=DNA polymerase
          Length = 924

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 34/144 (23%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD-- 67
           +V D+ET   +           +E +   KT  T + +         P+ + + G++D  
Sbjct: 209 VVIDLETVKTNPF---------IEKVTMKKT--TLEAY----PMSQQPKIVGI-GLSDRS 252

Query: 68  -----------EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
                      E L       +I          ++ E+IAHN KFD+ ++     R + D
Sbjct: 253 GYGCAIPLYHRENLMKGNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWL-----RASLD 307

Query: 117 PLDPSRIIDTLSIARRKHPSSRND 140
                 I DT+ I    +   R  
Sbjct: 308 IYLDISIWDTMLIHIIDYRGERYS 331


>gi|238484413|ref|XP_002373445.1| DNA polymerase epsilon, catalytic subunit A/POL2, putative
           [Aspergillus flavus NRRL3357]
 gi|317140506|ref|XP_001818230.2| DNA polymerase epsilon catalytic subunit A [Aspergillus oryzae
           RIB40]
 gi|220701495|gb|EED57833.1| DNA polymerase epsilon, catalytic subunit A/POL2, putative
           [Aspergillus flavus NRRL3357]
          Length = 2231

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 14/116 (12%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     DS  D+I+ I   ++   +  TNR      +        PE    
Sbjct: 283 LAFDIETTKLPLKFPDSVIDQIMMISYMIDGQGFLITNREIVSEDINDFEYTPKPEYYG- 341

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAK-FDVGFINAELQRINKD 116
                  + ++P   S+   F+    E     IA +N   FD  F+ A    +  D
Sbjct: 342 ----PFMIFNEPDERSVLERFFGHIKEAKPTVIATYNGDFFDWPFVEARASVLGID 393


>gi|149911268|ref|ZP_01899890.1| exonuclease [Moritella sp. PE36]
 gi|149805653|gb|EDM65653.1| exonuclease [Moritella sp. PE36]
          Length = 71

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
             L K   I  S    H AL DS + + +++ M+
Sbjct: 2   GELIKYANIP-SDGGFHRALFDSEMTTKLWLVML 34


>gi|229047208|ref|NP_935870.2| oligoribonuclease [Vibrio vulnificus YJ016]
 gi|229220645|ref|NP_760214.2| oligoribonuclease [Vibrio vulnificus CMCP6]
 gi|320155081|ref|YP_004187460.1| 3'-to-5' oligoribonuclease [Vibrio vulnificus MO6-24/O]
 gi|29611786|sp|Q8DCV6|ORN_VIBVU RecName: Full=Oligoribonuclease
 gi|41017432|sp|Q7MGZ7|ORN_VIBVY RecName: Full=Oligoribonuclease
 gi|319930393|gb|ADV85257.1| 3'-to-5' oligoribonuclease (orn) [Vibrio vulnificus MO6-24/O]
 gi|319999184|gb|AAO09741.2| Oligoribonuclease [Vibrio vulnificus CMCP6]
          Length = 181

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 17/147 (11%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKN 55
           +  +    I  D+E TGLD    +IIEI ++        L         Q        K 
Sbjct: 1   MSFSDQNLIWIDLEMTGLDPDVHKIIEIASIVTDSELNILAEGPVLAIHQS--EEELAKM 58

Query: 56  SPEALKLH---GITDEFLKD-KPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFIN 107
                  H   G+  E ++  + +      +   F  +      +    ++   D  F+ 
Sbjct: 59  DEWCTNTHTGSGLV-ERVRGSQITEQEAVEQTIAFLEKWVPKGVSPICGNSIGQDRRFLY 117

Query: 108 AELQRINKDPLDPSRIIDTLSIARRKH 134
             +  +          + TL    R+ 
Sbjct: 118 RHMPELEGYFHYRYIDVSTLKELTRRW 144


>gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110]
 gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110]
          Length = 940

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 44/157 (28%), Gaps = 39/157 (24%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETT LD    RI+ +                  + P      P A   H        
Sbjct: 368 IDTETTSLDEMVARIVGV---------------SFSIEPGAAAYVPLA---HNY-----P 404

Query: 72  DKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           D P    F  + +    +      + +  + K+D           N          DT+ 
Sbjct: 405 DAPAQLPFDEVLARLKPWLENPAKKKLGQHIKYDRHVF------ANHGIEVQGYAHDTML 458

Query: 129 IARRKHPSSRNDLNSLCKRY----GITISH---RSKH 158
            +        + L SL +R+    GI+      +  H
Sbjct: 459 QSYVLEAHRPHGLASLAERHLGRSGISYEDLCGKGAH 495


>gi|195380325|ref|XP_002048921.1| GJ21307 [Drosophila virilis]
 gi|194143718|gb|EDW60114.1| GJ21307 [Drosophila virilis]
          Length = 1248

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 17/106 (16%)

Query: 84   WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN---D 140
              F  +    ++ H  K D   IN          +   +IIDT+           +    
Sbjct: 1137 LKFLVDIGVIFVGHGLKNDFRVINIY--------VPSDQIIDTV----HLFHLPHHRMVS 1184

Query: 141  LNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
            L  L   + G  I   + H ++ D+     +Y   +   ++  F  
Sbjct: 1185 LRFLAWHFLGTKIQSET-HDSIEDARTTLQLYKHYLQLQAEKKFTL 1229


>gi|254786389|ref|YP_003073818.1| hypothetical protein TERTU_2386 [Teredinibacter turnerae T7901]
 gi|242667525|gb|ACS93562.1| conserved hypothetical protein [Teredinibacter turnerae T7901]
          Length = 129

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 23/127 (18%)

Query: 59  ALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           A  +HGIT  E L+D      +  +   F  E +              + ++  R + D 
Sbjct: 17  AESIHGITRAELLRDGLPAIEVVKQLNTFLTESDVV------------LYSDAHRWDGDW 64

Query: 118 LDPSRIIDTLSIARRKHPSSRNDL--NSLCKRYGITIS------HRSKHGALLDSHLLSD 169
           +D      T+ + +  +  S  DL  N    ++    S          H A  D  ++  
Sbjct: 65  VDTLYY--TVKVDKLFYLVSIYDLIGNDKADQFDKHFSRVAESGKYRHHRAADDVEMIYK 122

Query: 170 VYIKMMV 176
            Y ++M 
Sbjct: 123 AYYQIMG 129


>gi|291335761|gb|ADD95364.1| hypothetical protein [uncultured phage MedDCM-OCT-S05-C243]
          Length = 101

 Score = 39.0 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 12/98 (12%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
          +++N+M  +VFDIET GL      I  I   +        +  Q      G K  P    
Sbjct: 1  MQENQM--LVFDIETNGLLHDVHEIHCIAIYDS------TKEEQFVFNDRGGKCPPITEA 52

Query: 62 LHGITDEFLKDKPSFS----SIFSEFWDFFNEQNAEWI 95
          LH +T   +    + +     +  +F    +      I
Sbjct: 53 LHWLTSADVIAGHNIAGYDLPVLRKFILGLSITGMLLI 90


>gi|209879648|ref|XP_002141264.1| exonuclease family protein [Cryptosporidium muris RN66]
 gi|209556870|gb|EEA06915.1| exonuclease family protein [Cryptosporidium muris RN66]
          Length = 262

 Score = 39.0 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 9/107 (8%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D E  G      +I  +G + +++          F+ P+ R  +    K  G+T 
Sbjct: 8   RALSVDCEMVG-CGDKGQISVLGRIAVVNDKLEL-LMDTFVRPSYRVTN-FRTKWSGLTW 64

Query: 68  EFLKDKPSFSSIFSEFWDFF------NEQNAEWIAHNAKFDVGFINA 108
             LKD   F ++   F          +E     + H+   D+  ++ 
Sbjct: 65  NDLKDGECFETVRQRFLHIVEHYREHSEYGLVIVGHDVSNDLQVLDW 111


>gi|148223399|ref|NP_001079524.1| epithelial splicing regulatory protein 1 [Xenopus laevis]
 gi|82241595|sp|Q7ZY29|ESRP1_XENLA RecName: Full=Epithelial splicing regulatory protein 1; AltName:
           Full=RNA-binding motif protein 35A; AltName:
           Full=RNA-binding protein 35A
 gi|27694832|gb|AAH44002.1| MGC53361 protein [Xenopus laevis]
          Length = 688

 Score = 39.0 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 1   MIRKNKMRKIVFDIETTG-----LDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGR 53
           M   +    +V    T G     L S    +I++   ++++    K     +V + P+  
Sbjct: 1   MTAVSPDYLVVLFTTTAGANGSKLGSDEKEVIQL-LWKVINLANKKVGELHEVTVRPDHL 59

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
           + + E  ++  I  + L   P       +F      +    + 
Sbjct: 60  ELTEECKEITQIETDDLYVAPQLEQALQQFNQSVGNELNIGVG 102


>gi|226942895|ref|YP_002797968.1| oligoribonuclease [Azotobacter vinelandii DJ]
 gi|226717822|gb|ACO76993.1| Exonuclease [Azotobacter vinelandii DJ]
          Length = 180

 Score = 39.0 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 53/173 (30%), Gaps = 23/173 (13%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----SPE 58
            +N    I  D+E TGL+ + D IIE+  +             V       +        
Sbjct: 1   MQNPQNLIWIDLEMTGLNPERDVIIEMATIVTDSELNILAEGPVIAVHQSDEILAGMDEW 60

Query: 59  ALKLHGIT--DEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
             + HG +   + ++D       + +   +    +     +    ++   D  F+   + 
Sbjct: 61  NTRQHGRSGLTQRVRDSRIDTATAEARTLAFLEQWVPRGKSPMCGNSICQDRRFLARYMP 120

Query: 112 RINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +          + TL  +A R  P  R+                + H AL D
Sbjct: 121 GLEAWFHYRHVDVSTLKELAGRWAPQVRDS-----------FKKSAAHLALDD 162


>gi|326531440|dbj|BAJ97724.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 325

 Score = 39.0 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 16/142 (11%)

Query: 49  CPNGRKNSPEALKL---HGITDEFLKDKPSFSSIFSEFW---DFFNEQNAEWIAHNAKFD 102
            P   +++P ++ L   HG+     +     + +FS             A W+  ++ +D
Sbjct: 109 DPRVHRHNPRSVALLADHGLDFALQRRHGVDARVFSALLMSSGLVCSGAAAWVTFHSAYD 168

Query: 103 VGFINAEL----------QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
            G++   L          + I    +   + +                L++L  + G+  
Sbjct: 169 FGYLVKLLMGRKLPRTLPEFIGLVRVFFGQQVYDARHVMDSCAGLYGGLDALAAQLGVER 228

Query: 153 SHRSKHGALLDSHLLSDVYIKM 174
           +    H A  D+ L  DV+ ++
Sbjct: 229 AAGMSHQAGSDAALTWDVFRRI 250


>gi|303233064|ref|ZP_07319739.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
 gi|302480839|gb|EFL43924.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
          Length = 322

 Score = 39.0 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 49/145 (33%), Gaps = 28/145 (19%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ---------VFLCPNGRKNSPEALKL 62
            D+ETT        I+ +G +  +D + T +                  G   S     +
Sbjct: 136 VDLETTSRFPDRGYIVNLG-LAFMDLTSTAQVHDGHSAYFGMPELYKTKGVPLS----NI 190

Query: 63  HGITDEFLKDKPSF-------SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-N 114
           H IT + +  K  F        ++ + F  F        +AHNA F+  +    L     
Sbjct: 191 HHITWDDIAGKEPFRTNTTIQKALLATFTTF------PIMAHNAAFEDSWFMLHLPGYAE 244

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRN 139
                   IID+  I RR  P  R+
Sbjct: 245 GRKSGKIIIIDSRDICRRCDPEVRS 269


>gi|291280806|ref|YP_003497640.1| hypothetical protein DEFDS_P264 [Deferribacter desulfuricans SSM1]
 gi|290755508|dbj|BAI81884.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 1576

 Score = 39.0 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 27/149 (18%)

Query: 9   KIVFDIETTGL-----DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            +  DIET GL     D   + I      ++   +K  +T+   +    +          
Sbjct: 481 FVALDIETNGLKGYSTDKHKNTITMFSITKVDPKTKQLKTY--VIGYEHKD--------- 529

Query: 64  GITDEFLKDKPSFS----SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            I ++   D+ SF     ++     ++ N +N   I HN  FDV +I  +L  I+ + + 
Sbjct: 530 -IMNQM--DEKSFKLYKNNVRKLILNYLNSENIIKIFHNGTFDVSYIMNKL-NISPNEIK 585

Query: 120 PSRIIDTLSIARRKHPS---SRNDLNSLC 145
            +R  DT++I   +          L++L 
Sbjct: 586 VTRYFDTINILYLRMEEKLKGWQKLDNLA 614


>gi|226288880|gb|EEH44392.1| phosphoglucomutase [Paracoccidioides brasiliensis Pb18]
          Length = 806

 Score = 39.0 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 29/143 (20%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-------- 53
           + ++    +  D E TGLD + D+II+I          T+      + PNG         
Sbjct: 3   LSRSTDPLVWIDCEMTGLDPRTDKIIQICCF------ITDSNLD-LVEPNGFEAVIHYPK 55

Query: 54  ----KNSPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
                 +   +K H   G+T   L    + ++       +  +       H  +  +G +
Sbjct: 56  SVLDNMNDWCIKTHGQTGLTAAVLSSTTTPTAAAEGLLAYIKK-------HVPQKRIGLL 108

Query: 107 NAELQRINKDPLDPSRIIDTLSI 129
                  +K  L      D L  
Sbjct: 109 AGNSVHTDKAFLACEPYADVLEW 131


>gi|321474523|gb|EFX85488.1| hypothetical protein DAPPUDRAFT_237971 [Daphnia pulex]
          Length = 321

 Score = 39.0 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 26/168 (15%)

Query: 11  VFDIE---TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
             D E   TT    +   +  I  V   D       +   + P+         +  GI++
Sbjct: 164 AMDCEMCYTT----EGGELTRITIVSS-DLKIV---YDTLVKPDN-PVVDYNTRFSGISE 214

Query: 68  EFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             LK        + +   +  + +    I H    D+  +           L    +IDT
Sbjct: 215 RDLKHVMTKLKDVQAFLLNLLSSK-TILIGHGLGSDLRALR----------LIHDTVIDT 263

Query: 127 -LSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVYI 172
            +     + P  +  L  L    +   I     H ++ D+    ++ +
Sbjct: 264 SIVFPHSRGPPYKRGLKKLILDHFQKHIQKDGGHNSVEDAIACMELML 311


>gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 941

 Score = 39.0 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 32/141 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ETT  +     ++ +   +  +        Q +  P   +   EALK      
Sbjct: 369 KILSIDTETTSAEPMEAELVGMSFSDTEN--------QAYYVPVPAER-EEALK------ 413

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                      I +EF   +  + +  +  N K+D+  +      +  +        DT+
Sbjct: 414 -----------IVNEFRPLYENETSMKVGQNIKYDILVLQNYGMEVKGELF------DTM 456

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P  R++++ L + Y
Sbjct: 457 IAHYVLQPELRHNMDYLAEIY 477


>gi|329947400|ref|ZP_08294604.1| oligoribonuclease [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328525150|gb|EGF52201.1| oligoribonuclease [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 203

 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 26/176 (14%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-- 57
           M   + +  +  D E TGLD   D +IE+  V    + +       V + P         
Sbjct: 1   MTTSDPL--VWIDCEMTGLDLSADALIEVAVVVTDYELAPLAEGIDVLIKPPSAALEQMD 58

Query: 58  -EALKLH---GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINA 108
                +H   G+    LKD  +  +      D+        + A+   ++   D  F+  
Sbjct: 59  DYVRTMHTSSGLLT-DLKDGLTMEAARRTVLDYVTSLVPEPRTAQLAGNSVGTDKAFLAR 117

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           ++  + +        + +L  +A+R +P +          +         H AL D
Sbjct: 118 DMPELIEHLHYRIVDVSSLKELAKRWYPRT----------FFQAPKKAGGHRALAD 163


>gi|306820510|ref|ZP_07454143.1| conserved hypothetical protein [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
 gi|304551424|gb|EFM39382.1| conserved hypothetical protein [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
          Length = 287

 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS--KTNRTFQVFLCPNGRKNSPEAL 60
          +  DIETTGL   ++ I+ I      +    K  +     +  + +    + +
Sbjct: 17 LFLDIETTGLSPIDNEIVVISYATYFNDKKCKIVQLISQDIKNDEKNLINQFI 69


>gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem]
 gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem]
          Length = 892

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 40/165 (24%)

Query: 2   IRKNKMRKIV----------FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
           + + ++R++V           D+ETT L+ +  R++                      P+
Sbjct: 298 LTEEELRRVVAELEAAPAFAIDLETTSLNPREARVVGYAVSC---------------RPH 342

Query: 52  GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
             +  P   +  G   E L +      +     D    +    I  N K+D   +     
Sbjct: 343 EARYIPVGHRYLG-APEQLPEALVLEILGPLLKDPARRK----IGQNLKYDYQVLRMA-- 395

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHR 155
                        DT+  A   +P+  +  L++L   Y   + HR
Sbjct: 396 ----GFEMEGIWCDTMLAAYLVNPARNSQGLDALALEY---LDHR 433


>gi|304311001|ref|YP_003810599.1| hypothetical protein HDN1F_13630 [gamma proteobacterium HdN1]
 gi|301796734|emb|CBL44946.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 176

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 17/169 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLHGIT 66
            IV D+E +G   +    IE+G                 + P         EA ++HGI+
Sbjct: 8   PIVLDVEASGF-GRGSYPIEVGI-----ALPNGDLHAWLIKPLLEWVHWQEEAEQVHGIS 61

Query: 67  DEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
            E L ++      +          +           D  ++    ++           I 
Sbjct: 62  RERLQREGMGVRKVAMALNHMLAGKTVYTDG--WGVDRPWLALLFEQAELVQKFRLESIF 119

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            L    +    +      L +        R  H A  D+ ++  +Y ++
Sbjct: 120 VLLNQAQLESWAATRAQVLAE------GERQAHRAGTDAQIVQTIYRQL 162


>gi|313244393|emb|CBY15190.1| unnamed protein product [Oikopleura dioica]
          Length = 345

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 17/80 (21%)

Query: 3   RKNKMRKIVF--DIETTGLDSKNDRIIEIGAVELL------------DYSKTNRTFQVFL 48
           R   +   V   D ETTG  +++  I EI                  D+   N  F   +
Sbjct: 252 RGEDLNYTVIYYDTETTG-KARDCSICEIACWAQEFNKFECPSVYNPDHRGPN-VFYELM 309

Query: 49  CPNGRKNSPEALKLHGITDE 68
            P+ RK S  A K++GI  E
Sbjct: 310 FPD-RKFSAGASKVNGIKKE 328


>gi|313223435|emb|CBY40416.1| unnamed protein product [Oikopleura dioica]
          Length = 315

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 17/80 (21%)

Query: 3   RKNKMRKIVF--DIETTGLDSKNDRIIEIGAVELL------------DYSKTNRTFQVFL 48
           R   +   V   D ETTG  +++  I EI                  D+   N  F   +
Sbjct: 222 RGEDLNYTVIYYDTETTG-KARDCSICEIACWAQEFNKFECPSVYNPDHRGPN-VFYELM 279

Query: 49  CPNGRKNSPEALKLHGITDE 68
            P+ RK S  A K++GI  E
Sbjct: 280 FPD-RKFSAGASKVNGIKKE 298


>gi|301765382|ref|XP_002918111.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Ailuropoda
           melanoleuca]
          Length = 638

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 34/136 (25%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L+  + + T 
Sbjct: 262 EELNDAVGFSRVIHAIAN----SGKLIIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTC 317

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 318 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTATEQLH 377

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 378 EAGYDAYITGLCFISM 393


>gi|281340599|gb|EFB16183.1| hypothetical protein PANDA_006508 [Ailuropoda melanoleuca]
          Length = 615

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 34/136 (25%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L+  + + T 
Sbjct: 255 EELNDAVGFSRVIHAIAN----SGKLIIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTC 310

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 311 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTATEQLH 370

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 371 EAGYDAYITGLCFISM 386


>gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
 gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
          Length = 894

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 29/147 (19%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET+ LD     ++             +RT  V++ P G +   +           
Sbjct: 317 VAIDTETSSLDPHAAELVGFSLAWFEG----DRTRAVYV-PLGHREGKQI---------- 361

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                      +    +  + +   +A NAKFD     A+  R            DTL  
Sbjct: 362 -----PRDVALALLGPWLEDGSKAKLAQNAKFDWQIFWAQGLR------PRGLARDTLLE 410

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS 156
           +     ++ +DL+SL +RY   + HR+
Sbjct: 411 SYVLDSTAAHDLDSLAERY---LQHRN 434


>gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901]
 gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901]
          Length = 908

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 30/149 (20%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT L+              +D      +F   + P      P A    G      
Sbjct: 333 AFDTETTSLN-------------YMDAEIVGVSFA--VEPGKAAYVPVAHDYLG-----A 372

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++ S   + +           + +  N K+D   +       N D        DT+  +
Sbjct: 373 PEQLSREHVLARLKPLLENDGLKKVGQNLKYDANVL------ANYDIALKGIAYDTMLES 426

Query: 131 RRKHP-SSRNDLNSLCKRYGITISHRSKH 158
              +   SR+D+++L +   + + H++ H
Sbjct: 427 YVHNSTGSRHDMDTLAE---LHLGHKTIH 452


>gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2]
 gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2]
          Length = 891

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 27/135 (20%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETT       +++ I                  + P+     P      G T    K
Sbjct: 317 VDTETTSKHPMLAKLVGI---------------SFAVEPHRAYYIPV-----GHTGMDAK 356

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
            +P  S + +           + +  N K+D   +     R+           DT+  + 
Sbjct: 357 KQPDLSRVIALIRPLLENPEVKKVGQNIKYDYIVLTRHGIRM------QGLGFDTMIASH 410

Query: 132 RKHPSSR-NDLNSLC 145
             +PS R + L+ + 
Sbjct: 411 LLNPSQRGHSLDKIA 425


>gi|119587243|gb|EAW66839.1| exonuclease NEF-sp, isoform CRA_b [Homo sapiens]
          Length = 573

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 52/175 (29%), Gaps = 25/175 (14%)

Query: 45  QVFLCPNGRKNSPEALKLHGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKF 101
              + P  +          GIT + L   P       +  +        +A  + H+   
Sbjct: 170 DELVKPENKILDYL-TSFSGITKKIL--NPVTTKLKDVQRQLKALL-PPDAVLVGHSLDL 225

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR-YG--ITISHRSKH 158
           D+  +                +IDT S+   +    R  L  L K   G  I    R  H
Sbjct: 226 DLRALKMI----------HPYVIDT-SLLYVREQGRRFKLKFLAKVILGKDIQCPDRLGH 274

Query: 159 GALLDSHLLSDVYIKMMVGG----SQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
            A  D+  + ++    +  G    +++N     N        ++      +L+  
Sbjct: 275 DATEDARTILELARYFLKHGPKKIAELNLEALANHQEIQAAGQEPKNTAEVLQHP 329


>gi|2988400|gb|AAC31668.1| Unknown gene product [Homo sapiens]
          Length = 547

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 52/175 (29%), Gaps = 25/175 (14%)

Query: 45  QVFLCPNGRKNSPEALKLHGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKF 101
              + P  +          GIT + L   P       +  +        +A  + H+   
Sbjct: 170 DELVKPENKILDYL-TSFSGITKKIL--NPVTTKLKDVQRQLKALL-PPDAVLVGHSLDL 225

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR-YG--ITISHRSKH 158
           D+  +                +IDT S+   +    R  L  L K   G  I    R  H
Sbjct: 226 DLRALKMI----------HPYVIDT-SLLYVREQGRRFKLKFLAKVILGKDIQCPDRLGH 274

Query: 159 GALLDSHLLSDVYIKMMVGG----SQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
            A  D+  + ++    +  G    +++N     N        ++      +L+  
Sbjct: 275 DATEDARTILELARYFLKHGPKKIAELNLEALANHQEIQAAGQEPKNTAEVLQHP 329


>gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
 gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
          Length = 921

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 49/141 (34%), Gaps = 32/141 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ETT   + +  ++ +            + F+ F  P       EAL++  I  
Sbjct: 349 KILSLDTETTSTSAIDAELVGLSFA--------VKEFEAFYVPVPANR-EEALQIVNI-- 397

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
                KP++ +   E            +  N K+D+  +      +        ++ DT+
Sbjct: 398 ----FKPAYEN--PEILK---------VGQNLKYDLEVLRNYGIELKG------KMWDTM 436

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P   ++++ + + Y
Sbjct: 437 IAHYLIQPELHHNMDYMAEIY 457


>gi|302664086|ref|XP_003023679.1| hypothetical protein TRV_02187 [Trichophyton verrucosum HKI 0517]
 gi|291187685|gb|EFE43061.1| hypothetical protein TRV_02187 [Trichophyton verrucosum HKI 0517]
          Length = 734

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 66/206 (32%), Gaps = 24/206 (11%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D E    +     +  I  V   D  +    F   + P          +  G+T E L
Sbjct: 358 ALDCEMCITEGGKSELTRISLVSW-DGERVLDEF---VKPEN-PIIDYLTRFSGVTKEKL 412

Query: 71  KDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
               +  S +  +       + +  I H+   D+  +           L    I+DT SI
Sbjct: 413 DPVTTNLSDVQQKLLGILTPR-SILIGHSLNSDLNALK----------LTHPFIVDTASI 461

Query: 130 ARR-KHPSSRNDLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGSQINFGFK 186
               + P  +  L  LC+RY G  I      H  + D+       + ++    +    + 
Sbjct: 462 YPHPRGPPLKPSLKWLCQRYLGREIQKGMAGHDPVEDAKA----VLDLVKQKCEKGEAWG 517

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPL 212
           TNE       ++   +   +K   P+
Sbjct: 518 TNEASTESIFQRLARSSRPVKSSGPV 543


>gi|259417724|ref|ZP_05741643.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
 gi|259346630|gb|EEW58444.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
          Length = 935

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 36/150 (24%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI--- 65
            +  D ETTGL+     ++ I                  + P      P    L      
Sbjct: 349 YVAVDTETTGLNEMIADLVGICLC---------------VVPGQACYVP----LTHKAGN 389

Query: 66  ------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
                 +D+  + +    +          +     I  N K+D            ++ +D
Sbjct: 390 SDDLFGSDDLAEGQMPLETALEMLKPVLEDDAILKIGQNMKYDAKIFA-------RNGID 442

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRY 148
            + I DT+ ++   H     + +++L +RY
Sbjct: 443 ITPIDDTMLLSYALHGGMHGHGMDTLSERY 472


>gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 999

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 78/252 (30%), Gaps = 51/252 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD ETT LD+    ++        + +           P G K     + L       
Sbjct: 401 VAFDTETTSLDAMQAELVGFSLAIADNTA----------DPTGTKIRAAYIPLAHKNGVG 450

Query: 70  LK-------DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                    ++ S             +     +A N K+D   +    QR   +      
Sbjct: 451 DLLGGGLADNQISMRDALPRLKSLLEDAAVLKVAQNLKYDYLLM----QRYGIETRSFD- 505

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRY-----------------GITIS----HRSKHGA 160
             DT+ I+         + ++ L +++                  +T       R+ H A
Sbjct: 506 --DTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSGKANVTFDLVDIDRATHYA 563

Query: 161 LLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL--LKRDKPLFTRITK 218
             D+ +   ++  +++       G  +  +R  +     +  +    +  D+ + +R++ 
Sbjct: 564 AEDADVTLRLW--LVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSG 621

Query: 219 EELDEHDKTIQT 230
            EL +    ++ 
Sbjct: 622 -ELAQGAARLED 632


>gi|160700710|ref|YP_001552390.1| gp61 [Mycobacterium phage Giles]
 gi|159136660|gb|ABW88456.1| gp61 [Mycobacterium phage Giles]
          Length = 184

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 19/184 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS---PEALK---LH 63
           +  DIET G+      I E+ A               F+  +        PEA      +
Sbjct: 7   LFLDIETLGVTP-GAAIWEVAAARFEGERLVG-HMHAFVLHDPNHLDRGLPEAYARDYAN 64

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-------KD 116
              D          ++ +   D F E  A     N +FD+  + A               
Sbjct: 65  RYDD---AAALHPETVLAT-LDRFAEGRAIVCGSNPRFDMDRLEALAADEGVSAPGWHYH 120

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           P D   ++    + R   P+     + + +  G+      +H A  D      ++  +  
Sbjct: 121 PNDIPGMVHGYLLGRGIAPAPPWRTDFMSQCIGVDPRDYDRHTAEGDVWWTVAMWHAITE 180

Query: 177 GGSQ 180
             ++
Sbjct: 181 RAAR 184


>gi|25013002|gb|AAN71585.1| RH46192p [Drosophila melanogaster]
          Length = 293

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 55/171 (32%), Gaps = 23/171 (13%)

Query: 25  RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT---DEFLKDKPSFSSIFS 81
           RII++G   + D  KT   +  +        S +      I    +  ++ K        
Sbjct: 82  RIIQLGLTFMDDDGKTPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGID 141

Query: 82  --EFWDFFNEQNAEWI------AHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA--- 130
             +F +         +        ++ +D G++   L   N  P D S   D L I    
Sbjct: 142 PIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPP-DESEFFDLLHIYFPN 200

Query: 131 ----RRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +    S +N    L  +  +  +      +H A  D+ L    + KM
Sbjct: 201 IFNIKYLMKSCKNLKGGLQEVADQLELRRVG-PQHQAGSDALLTGMAFFKM 250


>gi|312383312|gb|EFR28451.1| hypothetical protein AND_03591 [Anopheles darlingi]
          Length = 2234

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 33/165 (20%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT-FQVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 269 LAFDIETTKLPLKFPDAQTDQIMMISYMIDGQGYLITNREIISNDVDDFEYTPKPEFEG- 327

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAEL---------- 110
               +  + ++P+   +  +F+D   + +   ++ +N   FD  F+ A            
Sbjct: 328 ----NFIVFNEPNELGLLQKFFDHILDVKPHIFVTYNGDFFDWPFVEARAAVYELDMRRE 383

Query: 111 -------QRINKDPLDPSRIIDTLSIARR--KHPSSRNDLNSLCK 146
                   R       P+  +D L   +R    P   + L ++ K
Sbjct: 384 IGFSKVNARDGNYLCRPAMHLDCLCWVKRDSYLPVGSHGLKAVAK 428


>gi|70999892|ref|XP_754663.1| DNA polymerase epsilon, catalytic subunit A/POL2 [Aspergillus
           fumigatus Af293]
 gi|74674212|sp|Q4WXH8|DPOE_ASPFU RecName: Full=DNA polymerase epsilon catalytic subunit A; AltName:
           Full=DNA polymerase II subunit A
 gi|66852300|gb|EAL92625.1| DNA polymerase epsilon, catalytic subunit A/POL2, putative
           [Aspergillus fumigatus Af293]
 gi|159127677|gb|EDP52792.1| DNA polymerase epsilon, catalytic subunit A/POL2, putative
           [Aspergillus fumigatus A1163]
          Length = 2230

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 14/117 (11%)

Query: 9   KIVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALK 61
            + FDIETT L     DS  D+I+ I   ++   +  TNR      +        PE   
Sbjct: 282 ILAFDIETTKLPLKFPDSVIDQIMMISYMIDGQGFLITNREIVSEDIRDFEYTPKPEYSG 341

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAK-FDVGFINAELQRINKD 116
                   + ++P+  S+   F++   E     IA +N   FD  F+ A    +  D
Sbjct: 342 -----PFMIFNEPNERSVIERFFEHIKEAKPTVIATYNGDFFDWPFVEARASVLGID 393


>gi|21357541|ref|NP_648538.1| Pop2, isoform A [Drosophila melanogaster]
 gi|15010474|gb|AAK77285.1| GH06247p [Drosophila melanogaster]
 gi|23096142|gb|AAF49972.2| Pop2, isoform A [Drosophila melanogaster]
 gi|220945074|gb|ACL85080.1| Pop2-PA [synthetic construct]
 gi|220954902|gb|ACL89994.1| Pop2-PA [synthetic construct]
          Length = 297

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 55/171 (32%), Gaps = 23/171 (13%)

Query: 25  RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT---DEFLKDKPSFSSIFS 81
           RII++G   + D  KT   +  +        S +      I    +  ++ K        
Sbjct: 86  RIIQLGLTFMDDDGKTPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGID 145

Query: 82  --EFWDFFNEQNAEWI------AHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA--- 130
             +F +         +        ++ +D G++   L   N  P D S   D L I    
Sbjct: 146 PIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPP-DESEFFDLLHIYFPN 204

Query: 131 ----RRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +    S +N    L  +  +  +      +H A  D+ L    + KM
Sbjct: 205 IFDIKYLMKSCKNLKGGLQEVADQLELRRVG-PQHQAGSDALLTGMAFFKM 254


>gi|222475744|ref|YP_002564265.1| hypothetical protein Hlac_2812 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222454115|gb|ACM58379.1| hypothetical protein Hlac_2812 [Halorubrum lacusprofundi ATCC
           49239]
          Length = 221

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 14/130 (10%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLD---YSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +  + FDIETTG +  +D +  +G    +    + +T+      +    R      +++ 
Sbjct: 3   LELVAFDIETTGFEV-SDEVTVVGFAVPMGVRAFVQTDGRAAPDVEAAVRDRVESHVQVS 61

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-----FDVGFINAELQRINKD-P 117
             T E   ++    ++ +   D     +   +A N +     FD+ F+   L R+  + P
Sbjct: 62  --THE--SERVLLEAVGAFAADRLVGNDVLLVAFNGELWRSGFDLPFLRTRLSRVGVEWP 117

Query: 118 LDPSRIIDTL 127
                  D L
Sbjct: 118 FREMPYADLL 127


>gi|300933812|ref|ZP_07149068.1| DNA polymerase III, epsilon subunit [Corynebacterium resistens DSM
           45100]
          Length = 539

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 9/112 (8%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQ--VFLCPNGRKNSPEALKLH 63
            +  ++ T+G+     R++ +  V      D                 G    P    LH
Sbjct: 95  FVTLEVATSGIHPTTSRLVAMSLVFYGPSTDADAPGEEVSAVTLRFNPGEDIGPW--HLH 152

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           G     +  +PSF++     +   + +      H      GFI  E +R  +
Sbjct: 153 GFHTADVAQEPSFTNSTDTLFRALDGRTVVL--HRCALTWGFIMQEFKRAQR 202


>gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145]
 gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145]
          Length = 920

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 61/195 (31%), Gaps = 50/195 (25%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R +  ++  FD ETT LD +  +I+                   +  P          +L
Sbjct: 341 RLSTEKRFAFDTETTSLDYRIAQIVGFSVAFDAQN--------AYYVPLAHDYEGAPEQL 392

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           +               I ++      +++ + I H+ K+D   +      +         
Sbjct: 393 NR------------EVILAQIKPILEDESVKKIGHHLKYDAHVLENHGIHL------AGW 434

Query: 123 IIDTLSIARRKHP-SSRNDLNSLCKRY----------------------GITISHRSKHG 159
             DT+  +   +  ++R+ ++ + + Y                       I +   + H 
Sbjct: 435 YFDTMLASYVLNSVATRHGMDDVARLYLSHLTTTYEQVAGKGAKQKTFNQIPLET-AAHY 493

Query: 160 ALLDSHLLSDVYIKM 174
           A  D+H+   +Y  +
Sbjct: 494 AAEDAHVTYRLYEVL 508


>gi|127511493|ref|YP_001092690.1| oligoribonuclease [Shewanella loihica PV-4]
 gi|166216587|sp|A3QAD3|ORN_SHELP RecName: Full=Oligoribonuclease
 gi|126636788|gb|ABO22431.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica
          PV-4]
          Length = 181

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          +  ++   I  D+E TGL+ + DRIIEI  +
Sbjct: 1  MAADETNLIWVDLEMTGLEPEVDRIIEIATI 31


>gi|256078981|ref|XP_002575770.1| DNA polymerase epsilon catalytic subunit [Schistosoma mansoni]
 gi|238661018|emb|CAZ32005.1| DNA polymerase epsilon, catalytic subunit, putative [Schistosoma
           mansoni]
          Length = 3291

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 67/222 (30%), Gaps = 65/222 (29%)

Query: 10  IVFDIETTGL-----DSKNDRIIEI------GAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
           + FDIETT +     D  ND+II I          + +    +   + F     R   P 
Sbjct: 297 LAFDIETTKMPLKFPDPTNDQIIMISYMLDGAGHLICNREILSEDIEDF-DYTPRPEFPG 355

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFF-NEQNAEWIAHN-AKFDVGFINAELQRINKD 116
              +H +  E   D  +F      F++     +    + +N   FD  FI          
Sbjct: 356 HFTVHNLKTEL--DCITF------FFEHIQRVRPNILVTYNGDHFDWPFIEVRAASYGLS 407

Query: 117 PLD-------------------------PSRIIDTLSIARR--KHPSSRNDLNSLCK--- 146
             +                         P+  ID L   +R    P     L ++ K   
Sbjct: 408 MSEETGFSRQKGTVGPGRDGSSGEYLSRPAVHIDCLCWVKRDSYLPVGARGLKAVAKAKL 467

Query: 147 RYG-ITISH----RSKH---GALL-----DSHLLSDVYIKMM 175
           RY  I +      R  H     L      D+     +Y+K +
Sbjct: 468 RYDPIEVDPELMCRMAHESPRELANYSVSDAVATYYLYMKYV 509


>gi|121705378|ref|XP_001270952.1| DNA polymerase epsilon, catalytic subunit A/POL2, putative
           [Aspergillus clavatus NRRL 1]
 gi|119399098|gb|EAW09526.1| DNA polymerase epsilon, catalytic subunit A/POL2, putative
           [Aspergillus clavatus NRRL 1]
          Length = 2229

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 14/117 (11%)

Query: 9   KIVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALK 61
            + FDIETT L     DS  D+I+ I   ++   +  TNR      +        PE   
Sbjct: 282 ILAFDIETTKLPLKFPDSVIDQIMMISYMIDGQGFLITNREIVSEDINDFEYTPKPEY-- 339

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAK-FDVGFINAELQRINKD 116
            +G     + ++P+   +   F++   E     IA +N   FD  F+ A    +  D
Sbjct: 340 -NG--PFMIFNEPNERGLLERFFEHIKEAKPTVIATYNGDFFDWPFVEARASVLGID 393


>gi|67524821|ref|XP_660472.1| hypothetical protein AN2868.2 [Aspergillus nidulans FGSC A4]
 gi|40744263|gb|EAA63439.1| hypothetical protein AN2868.2 [Aspergillus nidulans FGSC A4]
          Length = 802

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 13/120 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRT-FQVFLC-PNGR--KNS 56
           + ++    +  D E TGLD   D I++I   +   D +  + T F+  +  P       S
Sbjct: 611 LTRSTDPLVWIDCEMTGLDPTTDHILQICCFITDADLNLLDATGFEAVIHVPQSALDSMS 670

Query: 57  PEALKLHGIT--DEFLKDK-PSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINA 108
              +  HG T   + +++   +  +  ++   +        + A    ++   D  F+  
Sbjct: 671 QWCIDTHGRTGLTQRVQNSTVTPEAAAADLLAYIKRYIPKPRTALLAGNSVHADKAFLAC 730


>gi|255531261|ref|YP_003091633.1| hypothetical protein Phep_1356 [Pedobacter heparinus DSM 2366]
 gi|255344245|gb|ACU03571.1| hypothetical protein Phep_1356 [Pedobacter heparinus DSM 2366]
          Length = 86

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 22 KNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72
          +   IIEIG  +   +  K   +  + + P   + S    +L  IT + +++
Sbjct: 14 QQSEIIEIGIYKLNTETGKITSSEGILIKPVRSEISEFCTRLTSITPQMVEE 65


>gi|255071365|ref|XP_002507764.1| predicted protein [Micromonas sp. RCC299]
 gi|226523039|gb|ACO69022.1| predicted protein [Micromonas sp. RCC299]
          Length = 204

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 9/96 (9%)

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNS 143
             +  +    ++ H  K D   IN          + P++I+DT+ +   K    +  L  
Sbjct: 116 LRYLVDAGCVFVGHGLKQDFKMIN--------VTVPPAQIVDTVELFHFK-RQRKLSLRF 166

Query: 144 LCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179
           L          +  H ++ D+     +Y K +   +
Sbjct: 167 LASYLLKEDIQQETHDSIEDARTAVRLYHKYLEMQA 202


>gi|24663076|ref|NP_729775.1| Pop2, isoform B [Drosophila melanogaster]
 gi|24663080|ref|NP_729776.1| Pop2, isoform C [Drosophila melanogaster]
 gi|23096143|gb|AAN12248.1| Pop2, isoform B [Drosophila melanogaster]
 gi|23096144|gb|AAN12249.1| Pop2, isoform C [Drosophila melanogaster]
 gi|25013016|gb|AAN71594.1| RH51274p [Drosophila melanogaster]
 gi|220942440|gb|ACL83763.1| Pop2-PB [synthetic construct]
 gi|220952662|gb|ACL88874.1| Pop2-PB [synthetic construct]
          Length = 293

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 55/171 (32%), Gaps = 23/171 (13%)

Query: 25  RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT---DEFLKDKPSFSSIFS 81
           RII++G   + D  KT   +  +        S +      I    +  ++ K        
Sbjct: 82  RIIQLGLTFMDDDGKTPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGID 141

Query: 82  --EFWDFFNEQNAEWI------AHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA--- 130
             +F +         +        ++ +D G++   L   N  P D S   D L I    
Sbjct: 142 PIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPP-DESEFFDLLHIYFPN 200

Query: 131 ----RRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +    S +N    L  +  +  +      +H A  D+ L    + KM
Sbjct: 201 IFDIKYLMKSCKNLKGGLQEVADQLELRRVG-PQHQAGSDALLTGMAFFKM 250


>gi|68065061|ref|XP_674514.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56493137|emb|CAH94511.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 570

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 60/166 (36%), Gaps = 21/166 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E          + ++  V+          +  ++ P+ +  +   L   GI +  LK
Sbjct: 395 VDCEMCETSGGYRELTKVTIVDAYMNII----YDSYVLPDNKITNYLTLYS-GINENTLK 449

Query: 72  D-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-LSI 129
           +     + +  E  +  N + +  + H  + D+  +           +    IIDT +  
Sbjct: 450 NVHTKLTDVQKELKNILNNK-SILVGHFLENDLHALK----------IKHDYIIDTSVIY 498

Query: 130 ARRKHPSSRNDLNSLCK-RYGITISHRSKHGALLDSHLLSDVYIKM 174
               +   +  L +L K    IT+   + H ++ D+ +   +++ +
Sbjct: 499 FNNNYNFLKPSLFNLSKKHLNITMERENGHNSIDDARI--SMFLAL 542


>gi|302857491|ref|XP_002959886.1| hypothetical protein VOLCADRAFT_101402 [Volvox carteri f.
           nagariensis]
 gi|300254032|gb|EFJ39050.1| hypothetical protein VOLCADRAFT_101402 [Volvox carteri f.
           nagariensis]
          Length = 114

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 17/22 (77%)

Query: 12  FDIETTGLDSKNDRIIEIGAVE 33
            D+ETTGL  + +RI+E+ AV+
Sbjct: 90  VDVETTGLQWRTERILELAAVD 111


>gi|190406410|gb|EDV09677.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
 gi|207347366|gb|EDZ73560.1| YCL036Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 566

 Score = 38.7 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 18/98 (18%)

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRI----------------IDTLSIARRKHPS 136
            ++ H+   D+ ++     +      +                    +DT    R+ +  
Sbjct: 382 AFVGHHVSGDLKWLETIGVKFPGRGYEGHLDHTLLLAETPGDLDVFILDTEQFYRKSYGE 441

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + L  + + + I   H   H A  D++    +++K 
Sbjct: 442 KGSSLGKILRLFEIP--HAFLHNAGNDAYYTLHLFMKF 477


>gi|296119307|ref|ZP_06837875.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM
           20306]
 gi|295967699|gb|EFG80956.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM
           20306]
          Length = 1388

 Score = 38.7 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 73/215 (33%), Gaps = 66/215 (30%)

Query: 10  IVFDIETTGLDSKNDRIIEI-GAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           +VFD+ET   D+ +  + E+ G V L        T+ V    NG +  P           
Sbjct: 817 VVFDLET--GDADDLHVTEVPGFVRL-------ATYSV----NGAEPVPTT--------- 854

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127
                     I  E      + +   + HN  ++D+  +        K  +   R+ DTL
Sbjct: 855 ---------DIAGELIPLLEKADT-IVGHNVLQYDLPALQRLYGLDVKALIKADRVRDTL 904

Query: 128 SIARRKHPSSRN------------------------DLNSLCKRYG------ITISHRSK 157
            +AR +    +N                         L +L K++G      +   +  +
Sbjct: 905 VMARLRAGGDKNLKYDLDKVASRCGVDGKLLADGETALKALAKQFGGFDKIPVDNPNYVE 964

Query: 158 HGALLDSHLLSDVYIKMMVG-GSQINFGFKTNEDR 191
           + AL D      VY K++   G +IN  +   E  
Sbjct: 965 Y-ALQDVRANVAVYEKLLTSVGKEINQDYLRLEHA 998


>gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
 gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
          Length = 917

 Score = 38.7 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    R++ +                  + P      P A        +  
Sbjct: 343 AFDTETTALDPMTARLVGL---------------SFSIEPGKAAYLPVA----HRGPDM- 382

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++     + +    +    + + +  + K+D   +      +N          DTL  +
Sbjct: 383 PEQLPIDDVLARLKPWLESADRKKVGQHLKYDAQVLANYGIALNGIE------HDTLLES 436

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 437 YVLESHRTHDMDSLALRHLGV 457


>gi|218960989|ref|YP_001740764.1| hypothetical protein CLOAM0674 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729646|emb|CAO80558.1| conserved hypothetical protein [Candidatus Cloacamonas
           acidaminovorans]
          Length = 362

 Score = 38.7 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 94  WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS 153
           ++A NA  D+G              +  ++++TLS   R   SS  +L    K+Y I I 
Sbjct: 185 FVAWNAHHDIGHK-------GISYENKIKLVNTLSKHLRVFISSETELPDELKKYKINIP 237

Query: 154 HRSKHGALLDSHL 166
               H AL  +HL
Sbjct: 238 PEQMHNALAFAHL 250


>gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16]
 gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16]
          Length = 938

 Score = 38.7 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 27/151 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M R      +  D ETT LD    +++ I                + + P      P A 
Sbjct: 349 MRRIEAAPLVAIDTETTSLDPMQAQLVGI---------------SLSVEPGVACYIPVAH 393

Query: 61  K---LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +   + G+ D     + S   +      +  + +   +  N K+DV        ++    
Sbjct: 394 RGPDVAGLPDH---GQLSREFVLGRMRAWLEDASRPKLGQNLKYDVHVFANHGVKL---- 446

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                  DT+  +        + ++SL +R 
Sbjct: 447 --RGVAHDTMLQSYVLASHRNHGMDSLAERL 475


>gi|6319813|ref|NP_009894.1| Gfd2p [Saccharomyces cerevisiae S288c]
 gi|140369|sp|P25370|GFD2_YEAST RecName: Full=Good for full DBP5 activity protein 2
 gi|5327|emb|CAA42380.1| hypothetical protein [Saccharomyces cerevisiae]
 gi|285810664|tpg|DAA07448.1| TPA: Gfd2p [Saccharomyces cerevisiae S288c]
          Length = 566

 Score = 38.7 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 18/98 (18%)

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRI----------------IDTLSIARRKHPS 136
            ++ H+   D+ ++     +      +                    +DT    R+ +  
Sbjct: 382 AFVGHHVSGDLKWLETIGVKFPGRGYEGHLDHTLLLAETPGDLDVFILDTEQFYRKSYGE 441

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + L  + + + I   H   H A  D++    +++K 
Sbjct: 442 KGSSLGKILRLFEIP--HAFLHNAGNDAYYTLHLFMKF 477


>gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666]
 gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666]
          Length = 944

 Score = 38.7 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 39/152 (25%), Gaps = 36/152 (23%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETT LD    +I+ I                  + P      P    L       
Sbjct: 370 VAVDTETTSLDEMLAQIVGI---------------SFSVTPGEAAYIP----LTH----D 406

Query: 70  LKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             D P       + +    +        +  + K+D           N          DT
Sbjct: 407 YPDAPAQLPRDEVLARLKPWLENPAIAKLGQHVKYDRHVF------ANHGIEVQGYAHDT 460

Query: 127 LSIARRKHPSSRNDLNSLCKRY----GITISH 154
           +  +        + L SL +R+    GI    
Sbjct: 461 MLQSYVLEVHKPHGLASLAERHVGRSGINYED 492


>gi|256270948|gb|EEU06074.1| Gfd2p [Saccharomyces cerevisiae JAY291]
          Length = 566

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 18/98 (18%)

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRI----------------IDTLSIARRKHPS 136
            ++ H+   D+ ++     +      +                    +DT    R+ +  
Sbjct: 382 AFVGHHVSGDLKWLETIGVKFPGRGYEGHLDHTLLLAETPGDLDVFILDTEQFYRKSYGE 441

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + L  + + + I   H   H A  D++    +++K 
Sbjct: 442 KGSSLGKILRLFEIP--HAFLHNAGNDAYYTLHLFMKF 477


>gi|323355974|gb|EGA87781.1| Gfd2p [Saccharomyces cerevisiae VL3]
          Length = 561

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 18/98 (18%)

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRI----------------IDTLSIARRKHPS 136
            ++ H+   D+ ++     +      +                    +DT    R+ +  
Sbjct: 377 AFVGHHVSGDLKWLETIGVKFPGRGYEGHLDHTLLLAETPGDLDVFILDTEQFYRKSYGE 436

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + L  + + + I   H   H A  D++    +++K 
Sbjct: 437 KGSSLGKILRLFEIP--HAFLHNAGNDAYYTLHLFMKF 472


>gi|291436370|ref|ZP_06575760.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291339265|gb|EFE66221.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 160

 Score = 38.7 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 19/112 (16%)

Query: 77  SSIFSEFWDFFNEQNA----EWIAHNAKFDVGFINAELQRI-NKDPLDPSRIID--TLSI 129
                EF D+  E  A        + A +D  F    L R     P   S  +D  TL  
Sbjct: 48  ERAMREFTDWVREAAAGAQPVMCGYPAPYDWTFPYGYLIRFTGSSPFGHSGCLDMKTLYA 107

Query: 130 ARRKHPSSRNDLNSLCKRYGI----TISHRSK-HGALLDSHLLSDVYIKMMV 176
            +   P     L ++ K  G      +S R   H AL D+   ++++  +M 
Sbjct: 108 TKAGLP-----LRAVAK--GTMPREPLSRRRHTHHALDDAIEQAELFANLMA 152


>gi|255086157|ref|XP_002509045.1| predicted protein [Micromonas sp. RCC299]
 gi|226524323|gb|ACO70303.1| predicted protein [Micromonas sp. RCC299]
          Length = 2478

 Score = 38.7 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 62/222 (27%)

Query: 1   MIRKNKMRKIVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT--------FQV 46
           M+ + +++   FDIETT L     D++ D++  I   ++   Y   NR         F+ 
Sbjct: 289 MLARGEVKICAFDIETTKLPLKFPDAEYDQVFMISYMLDGQGYLIINREVVSADIEDFEY 348

Query: 47  FLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVG 104
              P      P            + ++P  +++   ++D   E Q + ++ +N   FD  
Sbjct: 349 --SPKPEYPGPFI----------VWNEPDEAALLRRWFDHMREVQPSVYVTYNGDFFDWP 396

Query: 105 FI----------------NAELQRINKDPLDPSRIIDTLSIARR--KHPSSRNDLNSLCK 146
           F+                    ++  +     +  +D  +  +R    P+  + L ++ K
Sbjct: 397 FVETRAEKNGMSMYLELGMRCDRKTGECRSRSALHLDAFAWVKRDSYLPAGSHGLKAVTK 456

Query: 147 -RYG-----------ITISHRSKHG----ALLDSHLLSDVYI 172
            + G           +  +    H     ++ D+     +Y+
Sbjct: 457 AKLGYNPVEVDPEDMLPFAQEQPHHMAAYSVSDAVSTYYLYM 498


>gi|268570106|ref|XP_002640693.1| Hypothetical protein CBG19758 [Caenorhabditis briggsae]
          Length = 2152

 Score = 38.7 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 19/120 (15%)

Query: 8   RKIVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEAL 60
           R + FDIETT L     D ++D I+ I   V+   +   NR      +     + +P+A 
Sbjct: 255 RVLAFDIETTKLPLKFPDRESDEIMMISYMVDGRGFLIINREIVSADIN--AFEYTPKAE 312

Query: 61  ---KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD 116
              +        + ++   +++  +F+D F +     + +N   FD  F+ A  +    +
Sbjct: 313 YKGEFT------VWNEKDETALIRKFFDHFLQVRPIVVTYNGDFFDWPFVEARAKIRGFN 366


>gi|254511729|ref|ZP_05123796.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221535440|gb|EEE38428.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 933

 Score = 38.7 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 36/150 (24%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI--- 65
            +  D ETTGL+     ++ I                  + P      P    L      
Sbjct: 347 WVAVDTETTGLNEMIADLVGISLC---------------IEPGEACYIP----LTHRESA 387

Query: 66  ------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
                 +D   + +       +     F + +   I  N K+D         R   + + 
Sbjct: 388 TDDLFGSDALAEGQMPLDEALTLLKPVFEDSSILKIGQNMKYDAKI----FARYGVNVVP 443

Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRY 148
                DT+ ++   H     + +++L +RY
Sbjct: 444 ID---DTMLMSYAMHGGKHGHGMDTLSERY 470


>gi|212526340|ref|XP_002143327.1| RNA exonuclease Rex2, putative [Penicillium marneffei ATCC 18224]
 gi|210072725|gb|EEA26812.1| RNA exonuclease Rex2, putative [Penicillium marneffei ATCC 18224]
          Length = 189

 Score = 38.7 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 68/187 (36%), Gaps = 44/187 (23%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS---PE 58
           ++++    +  D E TGLD + D+I++I          T+   Q  L PNG +     P+
Sbjct: 3   LQRSAAPLVWVDCEMTGLDPETDQILQICCF------ITDAQLQ-LLEPNGFEIVVHQPK 55

Query: 59  A---------LKLH---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKF 101
           A         +  H   G+T   L      ++  S+   +       ++ A    ++   
Sbjct: 56  AKLDAMSQWCIDTHGKSGLTQAVLASTTDAATASSQLLAYIKRYVPEQRTALLAGNSIHA 115

Query: 102 DVGFINAE-----LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
           D  F+        L+ ++   LD    + T+  A R+  S     + L +        R 
Sbjct: 116 DRAFLAKPPYSPILEWLHYRLLD----VSTIKEAVRRWGS-----DELLRAA---PPKRE 163

Query: 157 KHGALLD 163
            H A  D
Sbjct: 164 VHLARDD 170


>gi|92115158|ref|YP_575086.1| hypothetical protein Csal_3043 [Chromohalobacter salexigens DSM
           3043]
 gi|91798248|gb|ABE60387.1| conserved hypothetical protein [Chromohalobacter salexigens DSM
           3043]
          Length = 165

 Score = 38.7 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 54/166 (32%), Gaps = 20/166 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLHG 64
           M  I+ DIE +G   +    IE+G            T    + P        P+A  LHG
Sbjct: 1   MLPILLDIEASGF-GRGSYPIEVGLARAD-----GSTCAFLIQPLEEWTHWDPKAELLHG 54

Query: 65  ITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHN--AKFDVGFINAELQRINKDPLDPS 121
           I+   L ++      +     D         IA++    +D  +++         P    
Sbjct: 55  ISRGRLHREGHPVIEVARWLNDELASAG---IAYSDSWGYDNTWLSLLFHHAGMLPRFRL 111

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
             +  L    +          ++ +  GI      +H A  D+ LL
Sbjct: 112 EALRRLLDESQLERWGAMK-ETIIRERGI-----QRHRAGEDARLL 151


>gi|332978247|gb|EGK14977.1| oligoribonuclease [Psychrobacter sp. 1501(2011)]
          Length = 193

 Score = 38.7 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 21/163 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRK-NSPEALKLH---G 64
            D+E TGLD+ ND IIE+  +   +          F + +             K H   G
Sbjct: 21  IDLEMTGLDTMNDDIIEVATIVTDEDLNILAEGPVFAIKVSDQKLNGMDDWNTKQHGQSG 80

Query: 65  ITDEFLKDKPSFSSIFSEFWDFF----NEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           + D   +   +      E  +F     +E  +    ++   D  F+  ++ ++ +     
Sbjct: 81  LIDRVRRSTVTLEQAEKETIEFLNKWVDEGKSPMCGNSICQDRRFLARQMPQLER--FFH 138

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            R +D  SI    +    + L          +     H A+ D
Sbjct: 139 YRNLDVSSIKELCYRWRPDILK--------GVEKTGSHLAMDD 173


>gi|309365465|emb|CAP23187.2| hypothetical protein CBG_02010 [Caenorhabditis briggsae AF16]
          Length = 300

 Score = 38.7 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 70/195 (35%), Gaps = 22/195 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND---RIIEIGAVELL---DYSKTNRTFQVFLCPN 51
           MI +        ++  ++TT  +   D    +I+I AV +    +  + N  F  ++ P 
Sbjct: 1   MIHQPSTPFQNLVILKVKTTSQEKNYDFPSEVIQISAVVVDVKNNAIRENMMFNEYVMPV 60

Query: 52  -GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-----VGF 105
              K +   +K  G+T E + +  SF  +  +F ++        +      D        
Sbjct: 61  INSKLTENCVKTTGVTQENVNNARSFRIVNEKFSNWLESNQLVGVKSAFVMDSRVDIWQR 120

Query: 106 INAELQRIN-KDPLDPSRIIDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSKHGAL 161
           +  +   I  + P    + I+  ++   +    P     L  L   + I +  R    A 
Sbjct: 121 LQYQCALIGVRMPARFRQWINLWTVCFIEAESMPEDNTRL--LADAFWIDVPERRL-TAP 177

Query: 162 LDSHLLSDVYIKMMV 176
            +  +L+ V   ++ 
Sbjct: 178 EECLILAKVVQNLLA 192


>gi|295096879|emb|CBK85969.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 591

 Score = 38.7 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 77  SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS 136
             I         + +     HN+ FD   +   + R+     D +R  DT+  A      
Sbjct: 51  EPIPGRLQKAIADPDTLLYFHNSHFDRTVLRHAIPRL---APDVTRWRDTMVQA--LAHG 105

Query: 137 SRNDLNSLCKRYGIT 151
               L +LC+  G+ 
Sbjct: 106 LPGALGALCEVLGVP 120


>gi|259144904|emb|CAY78169.1| Gfd2p [Saccharomyces cerevisiae EC1118]
          Length = 566

 Score = 38.7 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 18/98 (18%)

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRI----------------IDTLSIARRKHPS 136
            ++ H+   D+ ++     +      +                    +DT    R+ +  
Sbjct: 382 AFVGHHVSGDLKWLETIGVKFPGRGYEGHLDHTLLLAETPGDLDVFILDTEQFYRKSYGE 441

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + L  + + + I   H   H A  D++    +++K 
Sbjct: 442 KGSSLGKILRLFEIP--HAFLHNAGNDAYYTLHLFMKF 477


>gi|268577631|ref|XP_002643798.1| Hypothetical protein CBG02010 [Caenorhabditis briggsae]
          Length = 334

 Score = 38.7 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 70/195 (35%), Gaps = 22/195 (11%)

Query: 1   MIRKNKMRK---IVFDIETTGLDSKND---RIIEIGAVELL---DYSKTNRTFQVFLCPN 51
           MI +        ++  ++TT  +   D    +I+I AV +    +  + N  F  ++ P 
Sbjct: 35  MIHQPSTPFQNLVILKVKTTSQEKNYDFPSEVIQISAVVVDVKNNAIRENMMFNEYVMPV 94

Query: 52  -GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-----VGF 105
              K +   +K  G+T E + +  SF  +  +F ++        +      D        
Sbjct: 95  INSKLTENCVKTTGVTQENVNNARSFRIVNEKFSNWLESNQLVGVKSAFVMDSRVDIWQR 154

Query: 106 INAELQRIN-KDPLDPSRIIDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSKHGAL 161
           +  +   I  + P    + I+  ++   +    P     L  L   + I +  R    A 
Sbjct: 155 LQYQCALIGVRMPARFRQWINLWTVCFIEAESMPEDNTRL--LADAFWIDVPERRL-TAP 211

Query: 162 LDSHLLSDVYIKMMV 176
            +  +L+ V   ++ 
Sbjct: 212 EECLILAKVVQNLLA 226


>gi|71663249|ref|XP_818620.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
 gi|70883881|gb|EAN96769.1| ribonuclease, putative [Trypanosoma cruzi]
          Length = 517

 Score = 38.7 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 41/144 (28%)

Query: 80  FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ----------RINKDPLDPSRIIDTLSI 129
           F + W    +     I HN   D+ F+    +          +     L P  I DT ++
Sbjct: 243 FRQIWKCLTKCKKPIIGHNFWLDIMFMLHMHEAPLPTMYEDFKKQVHELFPC-IYDTKTL 301

Query: 130 ARRKHPSS---RNDLNSLCK---------------RY--GITISHRS-------KHGALL 162
           ++    S       L+ L K               R+  G               H A  
Sbjct: 302 SKTMFFSKLNKCYHLDDLYKECCKINKESKDSIVFRFPPGFHFYDEKCLGSEGKAHEAGY 361

Query: 163 DSHLLSDVYIKM---MVGGSQINF 183
           D+++   V+  M   +  G +I F
Sbjct: 362 DAYMTGIVFAIMKDVLKNGDEIEF 385


>gi|323334460|gb|EGA75835.1| Gfd2p [Saccharomyces cerevisiae AWRI796]
          Length = 561

 Score = 38.7 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 18/98 (18%)

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRI----------------IDTLSIARRKHPS 136
            ++ H+   D+ ++     +      +                    +DT    R+ +  
Sbjct: 377 AFVGHHVSGDLKWLETIGVKFPGRGYEGHLDHTLLLAETPGDLDVFILDTEQFYRKSYGE 436

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + L  + + + I   H   H A  D++    +++K 
Sbjct: 437 KGSSLGKILRLFEIP--HAFLHNAGNDAYYTLHLFMKF 472


>gi|332139961|ref|YP_004425699.1| oligoribonuclease [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549983|gb|AEA96701.1| oligoribonuclease [Alteromonas macleodii str. 'Deep ecotype']
          Length = 181

 Score = 38.7 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 54/175 (30%), Gaps = 25/175 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKN 55
           + K+    +  D+E TGLD +   ++EI  +        L         Q          
Sbjct: 1   MSKHDSNLVWIDMEMTGLDPETCVVMEIATIVTDAQLNILAEGPVIAVHQS--DDVLNNM 58

Query: 56  SPEALKLH---GITDEFLKDKPSFSSIFSE---FWD-FFNEQNAEWIAHNAKFDVGFINA 108
                ++H   G+T    + K S     ++   F + + +   +    +    D  F+  
Sbjct: 59  DEWCTRVHGESGLTARCRESKISVEEASAQTIAFLEQWVDAGKSPLCGNTIGQDRRFMVK 118

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  +  +     R ID  +I           L+            +  H AL D
Sbjct: 119 YMPEL--EAYFHYRNIDVSTIKELTRRWKPEVLD--------GFEKKGVHLALDD 163


>gi|94264033|ref|ZP_01287833.1| DNA polymerase A [delta proteobacterium MLMS-1]
 gi|93455544|gb|EAT05731.1| DNA polymerase A [delta proteobacterium MLMS-1]
          Length = 910

 Score = 38.7 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 50/146 (34%), Gaps = 22/146 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEI------GAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D ETT L++    ++ I       A    D S+       +  P G + +  +    
Sbjct: 316 LVIDTETTSLNALRAELVGISLCPLPAAATAADNSQPTPPPTAWYLPIGHRLADGSPA-- 373

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                    +   +++  +      +     + HN K+D+  + +    +       + +
Sbjct: 374 -------PGQLPLAAVQQQLAPLLGDPQLLKLGHNLKYDLQVLKSHGLEL------AAPL 420

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRY 148
            D++  +    P  R + L+ L    
Sbjct: 421 ADSMIASYLIDPGRRSHKLDDLSSEL 446


>gi|292492518|ref|YP_003527957.1| exonuclease [Nitrosococcus halophilus Nc4]
 gi|291581113|gb|ADE15570.1| exonuclease [Nitrosococcus halophilus Nc4]
          Length = 190

 Score = 38.7 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 65/191 (34%), Gaps = 23/191 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ----VFL----CPNG 52
           M ++     I  DIE  G       ++ IG+   L       T+       +     PN 
Sbjct: 1   MSKRQPEIYISTDIEADGPIPGPHSMLSIGSAAYLPDKTLIATYSANLKTLVGASSDPNT 60

Query: 53  RK---NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFIN 107
            +     PEA       +   ++  +   +  E+  +         +I   A +D  ++ 
Sbjct: 61  MRWWSQFPEAW------NACRREPRAPEEVMPEYVAWVQSLPGKPIFIGWPASWDFMWVY 114

Query: 108 AELQRI-NKDPLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
             + R   + P       I + ++  RK    +   + L KR+   + H   H AL D+ 
Sbjct: 115 WYITRFTGQRPFSEFALDIRSYAMGMRKSEFCKTGKHYLPKRWFDDLPH--THVALDDAL 172

Query: 166 LLSDVYIKMMV 176
               ++  M+ 
Sbjct: 173 AQGALFCNMLT 183


>gi|119187187|ref|XP_001244200.1| hypothetical protein CIMG_03641 [Coccidioides immitis RS]
          Length = 137

 Score = 38.7 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 13/120 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEA 59
           + ++    +  D E TGLD + D I++I                F V +       S  +
Sbjct: 3   LTRSNQPLVWIDCEMTGLDPETDHILQISCFLTDADLNLLEPEGFHVTVHQPQYILSSMS 62

Query: 60  ---LKLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINA 108
              +  H   G+T   L    + S   S    +        + A    ++   D  F+  
Sbjct: 63  SWCVSTHGRSGLTAAVLDSTTTPSEAASALLAYIQKYIPESRTALLAGNSVHADRAFLAR 122


>gi|225849884|ref|YP_002730118.1| DNA polymerase I [Persephonella marina EX-H1]
 gi|225644858|gb|ACO03044.1| DNA polymerase I [Persephonella marina EX-H1]
          Length = 584

 Score = 38.7 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 13/77 (16%)

Query: 74  PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK 133
           P FS    E  +     N   I HN KFD+ F+           + P  + DT+  ++  
Sbjct: 66  PQFSEHLKELLE-----NKGVIGHNLKFDIKFLKTNF------GIFPQIVFDTMIASQLL 114

Query: 134 HPSSR--NDLNSLCKRY 148
              SR  + L++L  R 
Sbjct: 115 SEDSREKHSLSALSYRL 131


>gi|323305872|gb|EGA59609.1| Gfd2p [Saccharomyces cerevisiae FostersB]
          Length = 561

 Score = 38.7 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 18/98 (18%)

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRI----------------IDTLSIARRKHPS 136
            ++ H+   D+ ++     +      +                    +DT    R+ +  
Sbjct: 377 AFVGHHVSGDLKWLETIGVKFPGRGYEGHLDHTLLLAETPGDLDVFILDTEQFYRKSYGE 436

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + L  + + + I   H   H A  D++    +++K 
Sbjct: 437 KGSSLGKILRLFEIP--HAFLHNAGNDAYYTLHLFMKF 472


>gi|151943793|gb|EDN62093.1| conserved protein [Saccharomyces cerevisiae YJM789]
          Length = 566

 Score = 38.7 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 18/98 (18%)

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRI----------------IDTLSIARRKHPS 136
            ++ H+   D+ ++     +      +                    +DT    R+ +  
Sbjct: 382 AFVGHHVSGDLKWLETIGVKFPGRGYEGHLDHTLLLAETPGDLDVFILDTEQFYRKSYGE 441

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + L  + + + I   H   H A  D++    +++K 
Sbjct: 442 KGSSLGKILRLFEIP--HAFLHNAGNDAYYTLHLFMKF 477


>gi|3204159|emb|CAA07084.1| coatomer, beta-prime subunit [Drosophila melanogaster]
 gi|3204161|emb|CAA07085.1| coatomer, beta-prime subunit [Drosophila melanogaster]
          Length = 914

 Score = 38.7 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 58/163 (35%), Gaps = 21/163 (12%)

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS--- 137
           ++  +      +    HN  F   F+ ++++R  +  ++ +R+ +    AR   PS    
Sbjct: 711 AQLLEVVGAAGSAQGHHNLAFLSAFLRSDVERCLEILIETNRLPEAAFFARTYLPSQMSR 770

Query: 138 -----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
                R  L  + ++ G +++          +    +++  +   G  +       E+R 
Sbjct: 771 IVELWREKLGKVNEKAGQSLA--------DPAQYT-NLFPGL---GDALRVEQHLQEERA 818

Query: 193 FKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            K   +   N+ L     PL   +   E     + ++   K A
Sbjct: 819 RKAPARLAANLPLNSERHPL-QELFAAEQGAAGQHLEEKVKPA 860


>gi|73958883|ref|XP_536966.2| PREDICTED: similar to poly(A)-specific ribonuclease (deadenylation
           nuclease) isoform 1 [Canis familiaris]
          Length = 638

 Score = 38.7 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 34/136 (25%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L+  + + T 
Sbjct: 262 EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTC 317

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 318 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTATEQLH 377

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 378 EAGYDAYITGLCFISM 393


>gi|123496446|ref|XP_001326973.1| polymerase zeta subunit [Trichomonas vaginalis G3]
 gi|121909895|gb|EAY14750.1| polymerase zeta subunit, putative [Trichomonas vaginalis G3]
          Length = 1045

 Score = 38.7 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 17/125 (13%)

Query: 2   IRKNKMRKIVFDIETTGL-----DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           ++   MR + FDIE  G       + ND +I+I     +   + +R    F+        
Sbjct: 242 MKIPPMRILSFDIEVGGSPENFPTADNDPVIQICCYVAVQGEEHSRFSAAFILNTCTPIV 301

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHN-AKFDVGFINAELQRIN 114
             A          L    +   +   F  F    + E I  +N   FD+ ++      I 
Sbjct: 302 GSA----------LFQFENEKDLLINFQRFIQWVDPEIITGYNICGFDIPYLVERSIAIK 351

Query: 115 KDPLD 119
            +   
Sbjct: 352 ANEFC 356


>gi|298528005|ref|ZP_07015409.1| DNA-directed DNA polymerase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511657|gb|EFI35559.1| DNA-directed DNA polymerase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 914

 Score = 38.7 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 29/167 (17%)

Query: 2   IRKNKMRKIV-FDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            R   M+K+V  D ETT L+     +++I I  +           F              
Sbjct: 198 TRAGTMKKLVSVDTETTSLEPYRLEEKMIAIS-LSWKKGQGLAFYFDHHE---------- 246

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
               HG+      +K     + S+  +  + +     A NAKFD  ++N    R   D  
Sbjct: 247 ----HGL------NKEKQDQVLSKLEEVLDPEYTVTCAANAKFDYKWLNY---RYGLDIP 293

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY--GITISHRSKHGALLD 163
                +  L     +   +   L +L + Y   +         AL D
Sbjct: 294 FFDFDVMLLEHLLDEDKKNEYGLKNLTRDYIPELAGYDEELEKALAD 340


>gi|156052617|ref|XP_001592235.1| hypothetical protein SS1G_06475 [Sclerotinia sclerotiorum 1980]
 gi|154704254|gb|EDO03993.1| hypothetical protein SS1G_06475 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 190

 Score = 38.7 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 13/108 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGR---KNSPEALKLH--- 63
            D E TGLD + D IIEI  +      +      +   +  +     K      K H   
Sbjct: 13  IDCEMTGLDIEKDVIIEISCIITNGNLEILDKEGWNAVIHQDKETMDKMDEWCTKTHAST 72

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFI 106
           G+T E L  + + +S  +    +  +     Q      ++   D  F+
Sbjct: 73  GLTSEVLSSRTTPASAANSLLYYIKKYIPQPQRGVLAGNSVHADKAFL 120


>gi|24584107|ref|NP_524836.2| beta'-coatomer protein [Drosophila melanogaster]
 gi|27923965|sp|O62621|COPB2_DROME RecName: Full=Coatomer subunit beta'; AltName: Full=Beta'-coat
           protein; Short=Beta'-COP
 gi|22946399|gb|AAF53294.2| beta'-coatomer protein [Drosophila melanogaster]
 gi|77403923|gb|ABA81840.1| GH18655p [Drosophila melanogaster]
          Length = 914

 Score = 38.7 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 58/163 (35%), Gaps = 21/163 (12%)

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS--- 137
           ++  +      +    HN  F   F+ ++++R  +  ++ +R+ +    AR   PS    
Sbjct: 711 AQLLEVVGAAGSAQGHHNLAFLSAFLRSDVERCLEILIETNRLPEAAFFARTYLPSQMSR 770

Query: 138 -----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
                R  L  + ++ G +++          +    +++  +   G  +       E+R 
Sbjct: 771 IVELWREKLGKVNEKAGQSLA--------DPAQYT-NLFPGL---GDALRVEQHLQEERA 818

Query: 193 FKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            K   +   N+ L     PL   +   E     + ++   K A
Sbjct: 819 RKAPARLAANLPLNSERHPL-QELFAAEQGAAGQHLEEKVKPA 860


>gi|209918889|ref|YP_002292973.1| phage exodeoxyribonuclease [Escherichia coli SE11]
 gi|209912148|dbj|BAG77222.1| phage exodeoxyribonuclease [Escherichia coli SE11]
          Length = 819

 Score = 38.7 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 22/169 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFL----------CPNGRKNSPEAL 60
            D+ET G    N  I+ IGAV       +   TF + +           P+G        
Sbjct: 638 IDLETMG-KKSNAPIVVIGAVFFDPQTGEIGPTFYIVISLVDAMDTGAVPDGSTIEWWLA 696

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFF----NEQNAEWIAHNAKFDVGFINAELQRINKD 116
           +        L D+        +F +F     +E+  +   + A FD   +    +R+N  
Sbjct: 697 QSSEARSAILVDQVKLVDALIQFREFINEYSDEKFVQVWGNGATFDNTILRTSYERLNIP 756

Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
              P R  +   +            ++   R  I      +H AL D+ 
Sbjct: 757 --CPWRYYNDRDVRTIVELGKTIGFDA---RTVIPFEGM-RHNALDDAR 799


>gi|170728503|ref|YP_001762529.1| oligoribonuclease [Shewanella woodyi ATCC 51908]
 gi|169813850|gb|ACA88434.1| Exonuclease RNase T and DNA polymerase III [Shewanella woodyi ATCC
           51908]
          Length = 181

 Score = 38.7 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 35/170 (20%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVF-----LCPNGRKNSPEAL 60
            D+E TGL+   DRIIEI  +        +         Q       +    +K+  E+ 
Sbjct: 11  VDLEMTGLEPDVDRIIEIATIVTDKELNIIAEGPVIAIHQSDEQLAKMDDWNKKHHGES- 69

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAELQRINKD 116
              G+ D     + S +   +   +F ++     ++    ++   D  F+   ++ +  +
Sbjct: 70  ---GLVDRVRSSQYSEAQAVAMTIEFLSQHVTKGSSPMCGNSVGQDRRFMTLYMREL--E 124

Query: 117 PLDPSRIIDTLSIA---RRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
                R ID  ++    RR  P   N  + L             H AL+D
Sbjct: 125 DFFHYRNIDVSTVKELVRRWDPEVMNGFSKL-----------GTHKALID 163


>gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215]
          Length = 923

 Score = 38.7 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    +I+ +                  + P      P A        +  
Sbjct: 349 AFDTETTSLDPMRAQIVGL---------------SFSVEPGHAAYVPVA----HRGPDMP 389

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P    + ++   +  +   + +  + K+D   +      +N          DTL  +
Sbjct: 390 AQLPR-DEVLAKLTPWLGDAGKKKLGQHLKYDAQVLANYGIALNGIE------HDTLLES 442

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 443 YVLESHRTHDMDSLALRHLGV 463


>gi|114306822|dbj|BAF31292.1| DNA polymerase epsilon catalytic subunit [Xenopus laevis]
          Length = 674

 Score = 38.7 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 68/210 (32%), Gaps = 53/210 (25%)

Query: 11  VFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLH 63
            FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE     
Sbjct: 271 AFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYE--- 327

Query: 64  G---ITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQRINKDPL 118
           G   I +E        + +   +++   E +    + +N   FD  F+           L
Sbjct: 328 GPFCIFNEA-----DEAHLIQRWFEHIQETKPNIIVTYNGDFFDWPFVETRATVHGMSML 382

Query: 119 ---------------DPSRIIDTLSIARR--KHPSSRNDLNSLCK-RYG---ITISHRSK 157
                           P   +D L   +R    P   ++L +  K + G   + +     
Sbjct: 383 QEIGFQKDNQGEYKSPPCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEEM 442

Query: 158 HG------------ALLDSHLLSDVYIKMM 175
                         ++ D+     +Y+K +
Sbjct: 443 CRMATEEPQVLATYSVSDAVATYYMYMKYV 472


>gi|172062801|ref|YP_001810452.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
 gi|171995318|gb|ACB66236.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
          Length = 917

 Score = 38.7 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    R++ +                  + P      P A        +  
Sbjct: 343 AFDTETTALDPMIARLVGL---------------SFSIEPGKAAYLPVA----HRGPDM- 382

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++     + +    +    + + +  + K+D   +      +N          DTL  +
Sbjct: 383 PEQLPIDEVLARLKPWLESADRKKVGQHLKYDAQVLANYGIELNGIE------HDTLLES 436

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 437 YVLESHRTHDMDSLALRHLGV 457


>gi|309361815|emb|CAP29074.2| hypothetical protein CBG_09528 [Caenorhabditis briggsae AF16]
          Length = 191

 Score = 38.7 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 32/174 (18%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-------SPE 58
           + R I  D E TGL+ +   + EI  +       T  T    +    ++          +
Sbjct: 12  EQRIIWIDCEMTGLNVEKQTLCEIAVIVTDSELNTIATGPDIVIHQPKEVLDNMEEWPRK 71

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAELQRIN 114
               +G+ ++ +  K S +    E  +F         +    ++   D  FI   + ++ 
Sbjct: 72  TFLENGLMEKIIDSKYSMNKAEDEVIEFLKLHALPGKSPIAGNSIYMDRLFIKKYMPKL- 130

Query: 115 KDPLDPSRIIDTLSIA---RRKHPSSRNDLNSLCKRYGITISHRSK--HGALLD 163
            D     R ID  +I    +R +P  ++               R    H A  D
Sbjct: 131 -DEFAHYRCIDVSTIKGLVQRWYPDFKH--------------PRKACTHRAYDD 169


>gi|312196769|ref|YP_004016830.1| hypothetical protein FraEuI1c_2935 [Frankia sp. EuI1c]
 gi|311228105|gb|ADP80960.1| hypothetical protein FraEuI1c_2935 [Frankia sp. EuI1c]
          Length = 203

 Score = 38.7 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 64/195 (32%), Gaps = 39/195 (20%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNS---------P 57
            +V DIET G     + +    +V +      +  F+  L   P    N          P
Sbjct: 12  YVVTDIETDGPWPGPNSMRSFASVAVSVDGTRHGQFEAVLEQLPGAAPNPHTLAWFQAQP 71

Query: 58  EA--LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA--EWIAHNAKFDVGFINAELQRI 113
           EA      G        +    ++ +E+  +     A   + A    FD  +++  L+R 
Sbjct: 72  EAWAAATTG--------QRPVPAVMAEYVAWVQALPARRMFAASPLAFDGCWLDYYLRRF 123

Query: 114 NK----------DPLDPSRIIDTLSIARRK--HPSSRNDLNSL-CKRYGITISHRSKHGA 160
            +          D L     +   S A      P +     +L    YG  + H   H A
Sbjct: 124 TRYGLIHGPYETDWLFTGPGLCLRSYAAAVTGLPVASVGGATLPSSWYG-DVPH--THRA 180

Query: 161 LLDSHLLSDVYIKMM 175
           L D+   +++ + + 
Sbjct: 181 LDDALGYANLLVALT 195


>gi|260579057|ref|ZP_05846956.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC
           43734]
 gi|258602808|gb|EEW16086.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC
           43734]
          Length = 653

 Score = 38.7 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 73/240 (30%), Gaps = 42/240 (17%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR++  DIET      N  +   G     D+      F++ L   G       +++    
Sbjct: 1   MRELFIDIET--FSPVN--LANSGVYPYADH----DGFELLL--FGYSIDGGPVEV---- 46

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR------INKDPLDP 120
              L +         +      +      A NA F+   +++ L R        +  L+P
Sbjct: 47  -VDLANGHQLPE---KVLSALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNP 102

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           ++   T+  +   +      L+ +     + +   S             +  +    G+ 
Sbjct: 103 AQWRCTMVWS--AYLGLPMSLDQVATVLHLPVRKDSAG---------KKLIRQFCTPGTP 151

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             F      +    +       IS  +RD  +       EL  HD+        + WD Y
Sbjct: 152 SVFNLGGMRNPPASDPDGWEQFISYNRRDVEV-------ELAIHDRLADFPLPASEWDTY 204


>gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
 gi|189433083|gb|EDV02068.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
          Length = 954

 Score = 38.7 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 38/137 (27%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETTG D     ++ +      +        Q F  P       EAL           
Sbjct: 386 LDTETTGTDPITAELVGMSFSFAEN--------QAFYVPVPANR-EEALA---------- 426

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                  I  +       +    I  N K+D+  +       N        + DT+    
Sbjct: 427 -------IVKKLKPIIENEKTLKIGQNIKYDMLVLG------NYGVEVRGPMFDTMIAHY 473

Query: 132 RKHPSSRNDLNSLCKRY 148
              P   + ++ L + Y
Sbjct: 474 VLQPELHHGMDYLAEVY 490


>gi|237841955|ref|XP_002370275.1| hypothetical protein TGME49_095060 [Toxoplasma gondii ME49]
 gi|95007091|emb|CAJ20310.1| hypothetical protein TgIa.0560c [Toxoplasma gondii RH]
 gi|211967939|gb|EEB03135.1| hypothetical protein TGME49_095060 [Toxoplasma gondii ME49]
 gi|221482748|gb|EEE21086.1| hypothetical protein TGGT1_075420 [Toxoplasma gondii GT1]
 gi|221503060|gb|EEE28766.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 176

 Score = 38.7 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 20/126 (15%)

Query: 93  EWIAHNAK-FDVGFINAE---LQRINKDPLDPSRI---------IDTLSIARRK-HPS-- 136
            ++AH+   FD+  +      L+R  +                 +DT+ ++R    P+  
Sbjct: 39  WFVAHSGANFDIPVLLRHEQTLRRAVRRIFPTGCFLKHVGCKYTVDTVVLSRALPWPNAL 98

Query: 137 -SRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIK--MMVGGSQINFGFKTNEDRF 192
              + L+ L  +  G +      H A+ DS  L+++  K   +    ++  G   NE+  
Sbjct: 99  AQSHSLSMLHAQLTGKSREKHQVHNAVGDSIALAEIMEKEPFLSAWQRMKVGRTLNEEFQ 158

Query: 193 FKEEKK 198
           ++   +
Sbjct: 159 YQNRLR 164


>gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336]
 gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336]
          Length = 951

 Score = 38.7 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 55/155 (35%), Gaps = 23/155 (14%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTF-QVFLCPNGR 53
           +  +   I  D ET  LD     ++ I             L + +  +   Q  L     
Sbjct: 349 KLQQADLIAVDTETDALDPMRANLVGISFALTNGEACYIPLAHKQAVKEMTQTDLFTESE 408

Query: 54  KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           +N+ +         E +K++ +  +  ++        + + I  N K+D+        ++
Sbjct: 409 QNAEQF--------ELVKNQLNKETCLAQLKPLLENPSIQKIGQNIKYDLTIFANHHIQL 460

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
           N          DT+  +     + R+++ +L +RY
Sbjct: 461 NGV------CFDTMLQSYVLDSTGRHNMGALSERY 489


>gi|291165127|gb|ADD81154.1| gp49 [Rhodococcus phage ReqiPine5]
          Length = 600

 Score = 38.3 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 71/238 (29%), Gaps = 67/238 (28%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIET G+D    R I         +    RT                   HGI  +
Sbjct: 36  PVAADIETKGIDIFTIRCITFSW-----HGSDGRT-------------------HGILLD 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             +     +           ++    + HN+ FDV  +      + ++ +   R+ DT+ 
Sbjct: 72  MGRRPEDLAEA-----KRIAQRAEHLVFHNSPFDVVPLVH-FGVMGREEV--FRVWDTIV 123

Query: 129 IARRKHP--SSRNDLNSLCKRYGIT----------------------ISHRS------KH 158
           ++R   P       L ++  +  ++                       +H        +H
Sbjct: 124 LSRMAFPDVMVPKKLEAMAVKMRVSDELPDGLKMMIKASGLKSKDGWYAHGDIDRPAYRH 183

Query: 159 GALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           GA+ D+ +   +   ++          K  +  F     +T      L   + L  R+
Sbjct: 184 GAIADTVVTLRLLPVLIDA-----IHRKLTDHPFTDRGLQTTDEAQALVDREMLVNRV 236


>gi|290960893|ref|YP_003492075.1| hypothetical protein SCAB_65331 [Streptomyces scabiei 87.22]
 gi|260650419|emb|CBG73535.1| putative WD-40 repeat protein [Streptomyces scabiei 87.22]
          Length = 1263

 Score = 38.3 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSR-NDLNSL-CKRYGITISHRSKHGALLDSHLLS 168
           +  DP + +R ID L  AR   P SR   L ++    YG    HR   GAL D++LL+
Sbjct: 224 LCHDPAERNRFIDLLLTARD--PGSRLRVLIAVRADFYGRCAEHRELAGALGDANLLA 279


>gi|241667791|ref|ZP_04755369.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 896

 Score = 38.3 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 31/144 (21%)

Query: 11  VFDIETTGLDSKNDRII--EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            FD ET  L++    ++     A E   Y    +    +L                    
Sbjct: 322 AFDTETDSLNTYEANLVGLSFCAKEGRAYYIPLQ--HRYL-------------------- 359

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +  +     +       F +     +AHN KFD   ++    +I       +++ DT+ 
Sbjct: 360 GVPQQLELEIVLDSLKPVFVDSQKSKVAHNFKFDEKILSKYGVKI------VNQVNDTMI 413

Query: 129 IARRKHPSSRNDLNSLCK-RYGIT 151
           +A     S ++D++SL K   GI 
Sbjct: 414 MAYVLKSSGKHDMDSLSKEHLGIE 437


>gi|269837691|ref|YP_003319919.1| hypothetical protein Sthe_1663 [Sphaerobacter thermophilus DSM
           20745]
 gi|269786954|gb|ACZ39097.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 416

 Score = 38.3 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 37/138 (26%), Gaps = 30/138 (21%)

Query: 9   KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D ETTGL       +  +G           R F        R  S E   L     
Sbjct: 82  IVFLDTETTGLAGGAGTHVFLVGLGHFEAGRLVVRQF------FMRGPSEEPALL----- 130

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDT 126
                  +     + F           ++ N + FD   I          P      +D 
Sbjct: 131 ------DALREALAPFR--------MLVSFNGRAFDWPLIEGRFIIHGYRPRFDFAHLDI 176

Query: 127 LSIARRKHPSSRNDLNSL 144
           L  ARR     R+ L S 
Sbjct: 177 LHPARRVW---RHRLASC 191


>gi|220932298|ref|YP_002509206.1| Tetratricopeptide TPR_2 repeat protein [Halothermothrix orenii H
           168]
 gi|219993608|gb|ACL70211.1| Tetratricopeptide TPR_2 repeat protein [Halothermothrix orenii H
           168]
          Length = 406

 Score = 38.3 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 29/137 (21%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGL   +  ++ +  +   D  K+N   + FL  +          L  I    
Sbjct: 95  LFVDTETTGLMGGSGTLVFLVGIGYFD--KSNFKIEQFLIRDFEDEPAMLFHLGNI---- 148

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           LKD P+                   ++ N   FD+  +N+       +PL+    ID L 
Sbjct: 149 LKDYPAI------------------VSFNGKSFDLPLLNSRFILNRFNPLEFENHIDLLY 190

Query: 129 IARRKHPSSRNDLNSLC 145
            ARR      N L S  
Sbjct: 191 PARRVW----NHLESCA 203


>gi|323126201|gb|ADX30666.1| gp44 [Mycobacterium phage Wonder]
          Length = 604

 Score = 38.3 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 45/151 (29%), Gaps = 48/151 (31%)

Query: 9   KIVFDIETTGLDSKND----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  D ETTGLD  +D    R+++ G                   PN     P       
Sbjct: 37  FLGLDTETTGLDIYSDGFRCRLVQFGT------------------PNEAWVIP------- 71

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                ++  P +     +           ++ HNA +D+  I      +     D    +
Sbjct: 72  -----VELGPRYEEEARQALRNVKG----FVLHNASYDLQVIERT---LGIPMEDMWPKV 119

Query: 125 -DTLSIARRKHPSS------RNDLNSLCKRY 148
            DT  +A    P         + L  L K Y
Sbjct: 120 TDTKILAHLVDPRPFKEGGIGHKLEELVKHY 150


>gi|295698795|ref|YP_003603449.1| p12-11p [Pyrococcus sp. 12/1]
 gi|295126590|gb|ADF80218.1| p12-11p [Pyrococcus sp. 12/1]
          Length = 195

 Score = 38.3 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 8  RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF 44
          ++ V D+ETTGL+ + D I+  G  +  +     R F
Sbjct: 42 KEAVLDLETTGLEPEWDEILSFGIAKDHEIKVYTRVF 78


>gi|163733043|ref|ZP_02140487.1| DNA polymerase I [Roseobacter litoralis Och 149]
 gi|161393578|gb|EDQ17903.1| DNA polymerase I [Roseobacter litoralis Och 149]
          Length = 933

 Score = 38.3 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 30/147 (20%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK------L 62
            +  D ETTGL+     ++ +                  + P      P   K      L
Sbjct: 347 YVAVDTETTGLNDMTADLVGVSLC---------------VEPGKACYIPLIHKAASSDDL 391

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
            G +D+  + +    +          +++   I  N K+D               +  + 
Sbjct: 392 FG-SDDLAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAKIFAQVG-------ITVAP 443

Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRY 148
           I DT+ ++   H     + +++L +RY
Sbjct: 444 IDDTMLMSYAMHGGLHGHGMDALSERY 470


>gi|149725913|ref|XP_001490195.1| PREDICTED: similar to poly(A)-specific ribonuclease (deadenylation
           nuclease) isoform 1 [Equus caballus]
          Length = 637

 Score = 38.3 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 34/136 (25%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L+  + + T 
Sbjct: 262 EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTC 317

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 318 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLH 377

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 378 EAGYDAYITGLCFISM 393


>gi|155371965|ref|NP_001094588.1| poly(A)-specific ribonuclease PARN [Bos taurus]
 gi|223590122|sp|P69341|PARN_BOVIN RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
           Full=Deadenylating nuclease; AltName: Full=Deadenylation
           nuclease; AltName: Full=Polyadenylate-specific
           ribonuclease
 gi|151556271|gb|AAI50016.1| PARN protein [Bos taurus]
 gi|296473404|gb|DAA15519.1| poly(A)-specific ribonuclease PARN [Bos taurus]
          Length = 638

 Score = 38.3 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 34/136 (25%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L+  + + T 
Sbjct: 262 EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTC 317

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 318 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLH 377

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 378 EAGYDAYITGLCFISM 393


>gi|89893464|ref|YP_516951.1| hypothetical protein DSY0718 [Desulfitobacterium hafniense Y51]
 gi|89332912|dbj|BAE82507.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1631

 Score = 38.3 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 18/157 (11%)

Query: 46  VFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSI-FSEFWDFFNEQNAEWIAHN-AKFDV 103
            F+       S + L + GI      D  +F S    +F  F          HN    D+
Sbjct: 35  TFIDTEIEPRSKKILDIGGIK----GDGSTFHSASVPDFTAFLRGSE-YLGGHNIFHHDL 89

Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCK--RYGITISHRSKHGAL 161
            +++  LQ      L  +++IDTL ++    P+      +L K  +     ++      L
Sbjct: 90  KYLDNTLQAAG---LHTAKVIDTLWLSPLLFPARPYH--ALLKDDKLQTEEANNP----L 140

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
            D+    D++   +    Q +   K       K +K+
Sbjct: 141 NDAIKARDLFFDEVTAFQQADPLLKVIFHSLLKGQKE 177


>gi|323349618|gb|EGA83837.1| Gfd2p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 487

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 18/98 (18%)

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRI----------------IDTLSIARRKHPS 136
            ++ H+   D+ ++     +      +                    +DT    R+ +  
Sbjct: 377 AFVGHHVSGDLKWLETIGVKFPGRGYEGHLDHTLLLAETPGDLDVFILDTEQFYRKSYGE 436

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + L  + + + I   H   H A  D++    +++K 
Sbjct: 437 KGSSLGKILRLFEIP--HAFLHNAGNDAYYTLHLFMKF 472


>gi|226490309|emb|CAQ42997.1| exonuclease [Escherichia coli K-12]
          Length = 89

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 1  MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNS-P 57
          M   +K    +  D ET G     DR  +  A+    +++        +  P       P
Sbjct: 1  MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60

Query: 58 EALKLHGITDEFLKDKPSFSSIFSE 82
           A+ + GIT +  + K    + F+ 
Sbjct: 61 GAVLITGITPQEARAKGENEAAFAA 85


>gi|332224711|ref|XP_003261512.1| PREDICTED: putative RNA exonuclease NEF-sp-like isoform 3 [Nomascus
           leucogenys]
          Length = 743

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 61/208 (29%), Gaps = 30/208 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E   L SK   +  I  V        +      + P  +          GIT + L 
Sbjct: 231 LDCEMC-LTSKGRELTRISLVAEGGCCVMDE----LVKPENKILDYL-TSFSGITKKIL- 283

Query: 72  DKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             P       +  +        +A  + H+   D+  +                +IDT S
Sbjct: 284 -NPVTTKLKDVQRQLKTLL-PPDAVLVGHSLDLDLRALKMI----------HPYVIDT-S 330

Query: 129 IARRKHPSSRNDLNSLCKR-YG--ITISHRSKHGALLDSHLLSDVYIKMMVGG----SQI 181
           +   +    R  L  L +   G  I    R  H A  D+  + ++    +  G    +++
Sbjct: 331 LLYVREQGRRFKLKFLARVILGKDIQCPDRLGHDATEDARTILELARYFLKHGPKKIAEL 390

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD 209
           N     N        ++      +L+  
Sbjct: 391 NLEALANHQEIQAAGQEPRNTAEVLQHP 418


>gi|332224707|ref|XP_003261510.1| PREDICTED: putative RNA exonuclease NEF-sp-like isoform 1 [Nomascus
           leucogenys]
 gi|332224709|ref|XP_003261511.1| PREDICTED: putative RNA exonuclease NEF-sp-like isoform 2 [Nomascus
           leucogenys]
          Length = 774

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 61/208 (29%), Gaps = 30/208 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E   L SK   +  I  V        +      + P  +          GIT + L 
Sbjct: 231 LDCEMC-LTSKGRELTRISLVAEGGCCVMDE----LVKPENKILDYL-TSFSGITKKIL- 283

Query: 72  DKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
             P       +  +        +A  + H+   D+  +                +IDT S
Sbjct: 284 -NPVTTKLKDVQRQLKTLL-PPDAVLVGHSLDLDLRALKMI----------HPYVIDT-S 330

Query: 129 IARRKHPSSRNDLNSLCKR-YG--ITISHRSKHGALLDSHLLSDVYIKMMVGG----SQI 181
           +   +    R  L  L +   G  I    R  H A  D+  + ++    +  G    +++
Sbjct: 331 LLYVREQGRRFKLKFLARVILGKDIQCPDRLGHDATEDARTILELARYFLKHGPKKIAEL 390

Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD 209
           N     N        ++      +L+  
Sbjct: 391 NLEALANHQEIQAAGQEPRNTAEVLQHP 418


>gi|156102292|ref|XP_001616839.1| POM1 [Plasmodium vivax SaI-1]
 gi|148805713|gb|EDL47112.1| POM1, putative [Plasmodium vivax]
          Length = 1860

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 43/148 (29%)

Query: 12   FDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             DIETTGL+  +++I  I+I      DY      + +F                 IT E 
Sbjct: 1313 LDIETTGLEVFDEKIRLIQIAV---EDYPVII--YDMF----------------NITKE- 1350

Query: 70   LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                    SI +   +    +    I  N KFD  F+         +  + + I DT   
Sbjct: 1351 --------SILTGLREVLKNEKVVKIIQNGKFDAKFLMH-------NKFEVANIFDTYIA 1395

Query: 130  ARRKHPSSR---NDLNSLCKRY-GITIS 153
            ++    +       LN++ ++Y  +T+ 
Sbjct: 1396 SKLLDKNKNMYGFKLNNIVEKYLNVTLD 1423


>gi|88858943|ref|ZP_01133584.1| ATP-dependent 26S proteasome regulatory subunit [Pseudoalteromonas
           tunicata D2]
 gi|88819169|gb|EAR28983.1| ATP-dependent 26S proteasome regulatory subunit [Pseudoalteromonas
           tunicata D2]
          Length = 183

 Score = 38.3 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 57/182 (31%), Gaps = 39/182 (21%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGR----KNSPEAL- 60
           M  ++ D+ET G    N  I+ IGAV       +    F   +         +  P  + 
Sbjct: 1   MNHVMLDLETMG-QGSNAAIVAIGAVFFEPTTGEIGANFYWRVDLESAAKYGEVDPSTII 59

Query: 61  -----------KLHGITDEFLKDKPSFSSIFSEFWDFF----NEQNAEWIAHNAKFDVGF 105
                      ++   +D+ L      +   SEF ++        N     + A FD   
Sbjct: 60  WWLKQSDAARAEIT--SDDTL----DLNCALSEFCEWIAQIEKTNNRIVWGNGASFDNVI 113

Query: 106 INAELQRI-NKDPLDPSRIID--TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           ++   + +  K P +     D  T+    R         +       +     + H AL 
Sbjct: 114 LSNAFKAVEYKKPWEYCNDRDVRTVVELGRTLKGFDPKRD-------MPFEG-TAHNALD 165

Query: 163 DS 164
           D+
Sbjct: 166 DA 167


>gi|307317153|ref|ZP_07596594.1| endodeoxyribonuclease [Sinorhizobium meliloti AK83]
 gi|306897241|gb|EFN27986.1| endodeoxyribonuclease [Sinorhizobium meliloti AK83]
          Length = 196

 Score = 38.3 bits (88), Expect = 0.89,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 53/174 (30%), Gaps = 38/174 (21%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPN-----GRK---------NS 56
            D+ET G    +  II IGA+    D  +    F   + P      GR          N 
Sbjct: 7   VDLETVG-QRFDAPIISIGAIFFDPDTGEFGPEFYRAIDPESAFRFGRPSGSTFKWWMNQ 65

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINK 115
            +A +        +    +  +  ++   F+     A    +   FD+  +     ++ +
Sbjct: 66  SDAAR-----KAAVAGSLTLDAALNDLTTFYRTHPKAPIWGNGPTFDITIMEHAYWQVFR 120

Query: 116 DP----LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           +         R   T+         S+ +L              + H AL D+ 
Sbjct: 121 EAAPWAFWNVRDCRTVLELGEVLGYSKPEL------------KGTAHNALDDAR 162


>gi|302339115|ref|YP_003804321.1| hypothetical protein Spirs_2617 [Spirochaeta smaragdinae DSM 11293]
 gi|301636300|gb|ADK81727.1| conserved hypothetical protein [Spirochaeta smaragdinae DSM 11293]
          Length = 392

 Score = 38.3 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 20/130 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGA---VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + +D+ET+GL       + +     +  ++      TF            PEA +L    
Sbjct: 85  LFYDLETSGLSGGAGTAVFLAGFLRLVPIENKGRRNTFFT----------PEATQL---- 130

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             FL D P          +    Q     ++N K     + A   R++   L   R +D 
Sbjct: 131 --FLADFPGERDFLEAIGELIKPQLLYL-SYNGKGFDRHLLASKFRLHALQLSMPRQLDL 187

Query: 127 LSIARRKHPS 136
           L  AR+    
Sbjct: 188 LYPARKFWKE 197


>gi|255549210|ref|XP_002515659.1| oligoribonuclease, mitochondrial, putative [Ricinus communis]
 gi|223545202|gb|EEF46711.1| oligoribonuclease, mitochondrial, putative [Ricinus communis]
          Length = 232

 Score = 38.3 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 11/115 (9%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSP--EALKLH 63
           M  +  D+E TGL+ + DR++EI  +       K+     + +  +        E  + H
Sbjct: 72  MPLVWIDMEMTGLNIEVDRVLEIACIITDGNLTKSVEGPDLVIHQSKECLEQMGEWCQSH 131

Query: 64  ----GITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAEL 110
               G+T++ L+   S     ++  +F              ++   D  F+   +
Sbjct: 132 HAASGLTEKVLQSTVSEREAETQVIEFVKRHVGTYTPLLAGNSVYVDFLFLKKYM 186


>gi|194758479|ref|XP_001961489.1| GF14994 [Drosophila ananassae]
 gi|190615186|gb|EDV30710.1| GF14994 [Drosophila ananassae]
          Length = 362

 Score = 38.3 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 38/133 (28%), Gaps = 28/133 (21%)

Query: 9   KIVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQV------------------- 46
             V D+ETT L + +     I E+          T R                       
Sbjct: 17  IAVLDLETTNLPAYSHNRVGITELCIHAFDAALLTERKGDEDGKNAVKSILPQPPRVLHK 76

Query: 47  --FLCPNGRKNSPEALKLHGITDEFLKDKPSF-SSIFSEFWDFFNEQNAE--WIAHN-AK 100
              L        P+A    G+++  L+ +  F          F     A    +AHN   
Sbjct: 77  LNLLFQPSMMVHPDAEDATGLSNYLLERESKFSKDSVGLILSFMKHLPAPVCLVAHNGWN 136

Query: 101 FDVGFINAELQRI 113
           FD   I   L++ 
Sbjct: 137 FDFPIIKQALEKH 149


>gi|327307324|ref|XP_003238353.1| RNA exonuclease Rex2 [Trichophyton rubrum CBS 118892]
 gi|326458609|gb|EGD84062.1| RNA exonuclease Rex2 [Trichophyton rubrum CBS 118892]
          Length = 188

 Score = 38.3 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 13/118 (11%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVFLC-PNGR--KNS 56
           ++++    +  D E TGLD  ND I++I     ++         F+  +  P     + +
Sbjct: 3   LQRSSDPLVWIDCEMTGLDPANDHILQICCYITDVQLNLLEPEGFEAIVHQPQDVLDRMN 62

Query: 57  PEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN-----EQNAEWIAHNAKFDVGFI 106
              +  H   G+T   L    +          +       ++ A    ++   D  F+
Sbjct: 63  AWCIDTHGRSGLTAAVLLSPTTAEEAARGLLAYIKQYVPTQRTALLAGNSVHADRAFL 120


>gi|145593082|ref|YP_001157379.1| hypothetical protein Strop_0517 [Salinispora tropica CNB-440]
 gi|145302419|gb|ABP53001.1| hypothetical protein Strop_0517 [Salinispora tropica CNB-440]
          Length = 261

 Score = 38.3 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 92  AEWIAHNA--KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
           A+ + H    +FD+  +N +     K P  P R +D L   +R+   + N L  + +  G
Sbjct: 85  ADVVVHYNGKRFDIPTLNRDFILAGKLPPAPFRQLDLLETVKRRFRFTSNKLAHISQELG 144

Query: 150 IT 151
           + 
Sbjct: 145 LE 146


>gi|148244280|ref|YP_001218974.1| oligoribonuclease [Candidatus Vesicomyosocius okutanii HA]
 gi|146326107|dbj|BAF61250.1| oligoribonuclease [Candidatus Vesicomyosocius okutanii HA]
          Length = 181

 Score = 38.3 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 48/187 (25%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           MI K+    I  D+E TGL  + D IIEI  +            Q+ +   G      +L
Sbjct: 1   MINKDT-NLIWIDLEMTGLTPEKDVIIEIATIVTDA--------QLHIIAQGP-----SL 46

Query: 61  KLH---GITDEF---------------------LKDKPSFSSIFSEFWDFFNEQNAEWIA 96
            +H    I                         +  K +          + N+  +    
Sbjct: 47  AIHQNDKILTSMNQWNTEHHTNSGLLKRVRKSNVSCKKAEIHTLKFLKKYVNKGASPMCG 106

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156
           +    D  F+   +  +  +     R ID  ++         N+         +     S
Sbjct: 107 NTICQDRRFLYNYMPTL--EQFFHYRHIDVSTLKELIMHWKPNE--------KMVFKKDS 156

Query: 157 KHGALLD 163
            H AL D
Sbjct: 157 AHLALSD 163


>gi|29566063|ref|NP_817633.1| gp44 [Mycobacterium phage Bxz2]
 gi|29424788|gb|AAN01798.1| gp44 [Mycobacterium phage Bxz2]
          Length = 604

 Score = 38.3 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 45/151 (29%), Gaps = 48/151 (31%)

Query: 9   KIVFDIETTGLDSKND----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            +  D ETTGLD  +D    R+++ G                   PN     P       
Sbjct: 37  FLGLDTETTGLDIYSDDFRCRLVQFGT------------------PNEAWVIP------- 71

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
                ++  P +     +           ++ HNA +D+  I      +     D    +
Sbjct: 72  -----VELGPRYEEEARQALRNVKG----FVLHNASYDLQVIERT---LGIPMEDMWPKV 119

Query: 125 -DTLSIARRKHPSS------RNDLNSLCKRY 148
            DT  +A    P         + L  L K Y
Sbjct: 120 TDTKILAHLVDPRPFKEGGIGHKLEELVKHY 150


>gi|4514356|dbj|BAA75392.1| AppA [Bacillus halodurans]
          Length = 531

 Score = 38.3 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 141 LNSLCKRYGITISHRSKHGALLDSHLLSD 169
           L++L ++ G  + H + H A  D+ + +D
Sbjct: 466 LSALTEQLG--LEHENPHRADSDAKVTAD 492


>gi|157413679|ref|YP_001484545.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
 gi|157388254|gb|ABV50959.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
          Length = 976

 Score = 38.3 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 24/147 (16%)

Query: 3   RKNKMRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R +K  +IV  D ET  L+  +  ++ IG     +         +F  P G +       
Sbjct: 375 RLDKTNQIVSLDTETNSLNPIDAELVGIGLCLGEEND------DLFYIPLGHQ------- 421

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
               T +   ++ S   +FS+  ++  +   E    N+KFD           N   +   
Sbjct: 422 ----TKKETPNQLSIEYVFSKLRNWIEDPKKEKALQNSKFDRQIF------FNHGLILKG 471

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY 148
              DTL      +   ++ L+ +  R 
Sbjct: 472 VTFDTLLADYLLNNQEKHGLSEISFRL 498


>gi|134299319|ref|YP_001112815.1| NAD+ synthetase [Desulfotomaculum reducens MI-1]
 gi|134052019|gb|ABO49990.1| NH(3)-dependent NAD(+) synthetase [Desulfotomaculum reducens MI-1]
          Length = 635

 Score = 38.3 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 16/114 (14%)

Query: 101 FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKH 158
           ++  F+    + + ++    S  I TL    R+    R+   L  L + YG +       
Sbjct: 101 YNAFFVAQNGKLLGRENFPYSFRIKTLQPNYREFDDERHFYSLRKLAQEYGKSPE----- 155

Query: 159 GALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
                  LLS VY+ +  GG ++  G    ED + ++   T P ++ LK   P+
Sbjct: 156 ------ELLSPVYVNI--GGQKLALGCLLCEDGWSEDFYVTKP-VTALKEKGPI 200


>gi|297598683|ref|NP_001046064.2| Os02g0176700 [Oryza sativa Japonica Group]
 gi|255670647|dbj|BAF07978.2| Os02g0176700 [Oryza sativa Japonica Group]
          Length = 1029

 Score = 38.3 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 66/181 (36%), Gaps = 36/181 (19%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFF---NEQNAEWIAH-NAKFDVGFINAELQRINK 115
           L ++GI+ E   DK       ++F  +     E++   +A      D+ ++  E +RIN 
Sbjct: 577 LDVNGISHEMTPDK------ANQFKKYIEEMAEESLRCVAFAYRNLDLNYVPNEEERINW 630

Query: 116 DPLDPSRIIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  D    +  +   +    P  RN ++ LCK  G+ +                    +M
Sbjct: 631 ELPDNELALIGIVGMKDPCRPGVRNAVD-LCKNAGVKV--------------------RM 669

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
           + G +         E     + + + P I   K    +F   +  E +     I  +G++
Sbjct: 670 VTGDNLQTARAIALECGILTDSQASQPVIIEGK----VFRAYSDAEREAVADQISVMGRS 725

Query: 235 A 235
           +
Sbjct: 726 S 726


>gi|222622293|gb|EEE56425.1| hypothetical protein OsJ_05593 [Oryza sativa Japonica Group]
          Length = 1013

 Score = 38.3 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 66/181 (36%), Gaps = 36/181 (19%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFF---NEQNAEWIAH-NAKFDVGFINAELQRINK 115
           L ++GI+ E   DK       ++F  +     E++   +A      D+ ++  E +RIN 
Sbjct: 547 LDVNGISHEMTPDK------ANQFKKYIEEMAEESLRCVAFAYRNLDLNYVPNEEERINW 600

Query: 116 DPLDPSRIIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  D    +  +   +    P  RN ++ LCK  G+ +                    +M
Sbjct: 601 ELPDNELALIGIVGMKDPCRPGVRNAVD-LCKNAGVKV--------------------RM 639

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
           + G +         E     + + + P I   K    +F   +  E +     I  +G++
Sbjct: 640 VTGDNLQTARAIALECGILTDSQASQPVIIEGK----VFRAYSDAEREAVADQISVMGRS 695

Query: 235 A 235
           +
Sbjct: 696 S 696


>gi|50252047|dbj|BAD27978.1| putative calcium-transporting ATPase [Oryza sativa Japonica Group]
          Length = 1057

 Score = 38.3 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 66/181 (36%), Gaps = 36/181 (19%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFF---NEQNAEWIAH-NAKFDVGFINAELQRINK 115
           L ++GI+ E   DK       ++F  +     E++   +A      D+ ++  E +RIN 
Sbjct: 591 LDVNGISHEMTPDK------ANQFKKYIEEMAEESLRCVAFAYRNLDLNYVPNEEERINW 644

Query: 116 DPLDPSRIIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +  D    +  +   +    P  RN ++ LCK  G+ +                    +M
Sbjct: 645 ELPDNELALIGIVGMKDPCRPGVRNAVD-LCKNAGVKV--------------------RM 683

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234
           + G +         E     + + + P I   K    +F   +  E +     I  +G++
Sbjct: 684 VTGDNLQTARAIALECGILTDSQASQPVIIEGK----VFRAYSDAEREAVADQISVMGRS 739

Query: 235 A 235
           +
Sbjct: 740 S 740


>gi|126738358|ref|ZP_01754079.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
 gi|126720855|gb|EBA17560.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
          Length = 936

 Score = 38.3 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 36/156 (23%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ETTGLD     ++ I                  + P      P   K+ G   +
Sbjct: 351 YVAVDTETTGLDEMVVDLVGISLC---------------VEPGEACYIPLTHKVGG---D 392

Query: 69  FLKDKPSFSSI---FSEFWDFFN---EQNAEW-IAHNAKFDVGFINAELQRINKDPLDPS 121
            L      +       +  +      E  A   I  N K+D   ++    R   D     
Sbjct: 393 DLFGGEGLAEGQMPLDQALEMLKPVLEDPAILKIGQNMKYDAKILH----RYGADVAPID 448

Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRS 156
              DT+ ++   H     + +++L +RY   + H+ 
Sbjct: 449 ---DTMLMSYALHAGLHGHGMDTLSERY---LDHKP 478


>gi|24372183|ref|NP_716225.1| oligoribonuclease [Shewanella oneidensis MR-1]
 gi|29611787|sp|Q8EJ78|ORN_SHEON RecName: Full=Oligoribonuclease
 gi|24346089|gb|AAN53670.1|AE015506_5 oligoribonuclease [Shewanella oneidensis MR-1]
          Length = 181

 Score = 38.3 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 47/134 (35%), Gaps = 11/134 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVF-----LCPNGRKNSPEAL 60
            D+E TGL+   DR+IEI  +        +         Q       +    +K+  E+ 
Sbjct: 11  IDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDEVLAAMDDWNQKHHGESG 70

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +  +    + +  + +   +    +  +  +    ++   D  F+N  ++ +       
Sbjct: 71  LIERVRASQVNEAEAVAQTIAFLAQYVPKGVSPMCGNSVGQDRRFLNRYMRELEDYFHYR 130

Query: 121 SRIIDTLSIARRKH 134
           +  + T+    ++ 
Sbjct: 131 NLDVSTVKELVKRW 144


>gi|50556632|ref|XP_505724.1| YALI0F21835p [Yarrowia lipolytica]
 gi|49651594|emb|CAG78535.1| YALI0F21835p [Yarrowia lipolytica]
          Length = 482

 Score = 38.3 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 8/96 (8%)

Query: 7  MRKIVFDIETT----GLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
          M+ +V  + TT    G+    D   IIE+    +   S  +      + P     +P   
Sbjct: 1  MKYLVVHVLTTCDEQGVYVTRDSTEIIEVAWTTVSPDS-ISPIQSTLVRPVNTPITPLCT 59

Query: 61 KLHGITDEFLKDKPSFSSIFSEFWD-FFNEQNAEWI 95
          +L  IT E            ++F      ++   ++
Sbjct: 60 QLTSITWETASSGVLLQQAIAQFAASGAADEGTVYV 95


>gi|300933484|ref|ZP_07148740.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 653

 Score = 38.3 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 73/240 (30%), Gaps = 42/240 (17%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR++  DIET      N  +   G     D+      F++ L   G       +++    
Sbjct: 1   MRELFIDIET--FSPVN--LANSGVYPYADH----DGFELLL--FGYSIDGGPVEV---- 46

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR------INKDPLDP 120
              L +         +      +      A NA F+   +++ L R        +  L+P
Sbjct: 47  -VDLANGHQLPE---KVLSALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNP 102

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
           ++   T+  +   +      L+ +     + +   S             +  +    G+ 
Sbjct: 103 AQWRCTMVWS--AYLGLPMSLDQVATVLHLPVRKDSAG---------KKLIRQFCTPGTP 151

Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240
             F      +    +       IS  +RD  +       EL  HD+        + WD Y
Sbjct: 152 SVFNLGGMRNPPASDPDGWEQFISYNRRDVEV-------ELAIHDRLADFPLPASEWDTY 204


>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040870|gb|ACT57666.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|317120755|gb|ADV02576.1| DNA polymerase A [Candidatus Liberibacter asiaticus]
          Length = 675

 Score = 38.3 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 12/73 (16%)

Query: 64  GITDEFLK-----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           G  D  ++       P    +  E  +     +   +AHN+ F+   + A         +
Sbjct: 36  GFDDHPVELWDCVHDPVMPQVLKEALE---NTDVTIVAHNSYFERTVLKACF----NLDI 88

Query: 119 DPSRIIDTLSIAR 131
              R I TL +AR
Sbjct: 89  PIHRWICTLVLAR 101


>gi|323338593|gb|EGA79811.1| Gfd2p [Saccharomyces cerevisiae Vin13]
          Length = 449

 Score = 38.3 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 18/98 (18%)

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRI----------------IDTLSIARRKHPS 136
            ++ H+   D+ ++     +      +                    +DT    R+ +  
Sbjct: 265 AFVGHHVSGDLKWLETIGVKFPGRGYEGHLDHTLLLAETPGDLDVFILDTEQFYRKSYGE 324

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             + L  + + + I   H   H A  D++    +++K 
Sbjct: 325 KGSSLGKILRLFEIP--HAFLHNAGNDAYYTLHLFMKF 360


>gi|299469651|emb|CBN76505.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 458

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 50/174 (28%), Gaps = 18/174 (10%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
             K + +  D E  G+     R   +    L+D+   +  +   + PN R        + 
Sbjct: 268 AEKAQYVALDCEMVGVGPGGCR-SALARCCLVDWDG-DTIYDKHVTPNERVTDFRTF-VS 324

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           G+    LK          E      ++    + H    D+  +          P   +R 
Sbjct: 325 GVKANHLKGGVRLRQCQEEVAAILKDK--VLVGHALTNDLKALMMSH------PPRSTRD 376

Query: 124 IDTLSIARRKH-----PSSRNDLNSLC-KRYGITISHRSKHGALLDSHLLSDVY 171
             T    ++ H           L  L  +     I     + A  D+    D+Y
Sbjct: 377 TATYRPYQKAHGKAGGKLRPRSLKLLSQEHLDRPIQTGQHNPA-EDAKAAMDLY 429


>gi|218290426|ref|ZP_03494556.1| conserved hypothetical protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239554|gb|EED06748.1| conserved hypothetical protein [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 423

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 4/89 (4%)

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127
           F+ D     ++     D F    +  + +N   +D              P +P+  +D L
Sbjct: 145 FVPDYAGEGAVVRLLADRFGRSGSVIVTYNGKSYDWPLFVNRCVLYGLRPPEPA-HLDLL 203

Query: 128 SIARRKHPS--SRNDLNSLCKRYGITISH 154
             ARR       R  L  +    G+    
Sbjct: 204 HPARRLWKRVVGRMKLADVEAVLGVKRDG 232


>gi|209546810|ref|YP_002278728.1| hypothetical protein Rleg2_4741 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538054|gb|ACI57988.1| hypothetical protein Rleg2_4741 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 182

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 12/114 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLHGIT 66
            +  D E + L  K+   +EI  V         R+  + + P  N    S +A ++HGI+
Sbjct: 2   IVFLDFEASSL-GKHSYPVEIAWVFED-----GRSRSLLIRPAANWTDWSSDAERIHGIS 55

Query: 67  DEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
            E L +   S + +  E     +  +    A +  +D  +++  L R    P  
Sbjct: 56  RELLARQGVSVAFVVKEMMMALSGHD--LYASSPSWDGKWLS-VLLRAGGIPRH 106


>gi|296219603|ref|XP_002755957.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Callithrix
           jacchus]
          Length = 464

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 34/136 (25%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L+  + + T 
Sbjct: 87  EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTC 142

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 143 VFPRLLDTKLMASTRPFKDIINNTSLAELEKRLKETPFSPPKVESAEGFPSYDTASEQLH 202

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 203 EAGYDAYITGLCFISM 218


>gi|296219601|ref|XP_002755956.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Callithrix
           jacchus]
          Length = 578

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 34/136 (25%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L+  + + T 
Sbjct: 201 EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTC 256

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 257 VFPRLLDTKLMASTRPFKDIINNTSLAELEKRLKETPFSPPKVESAEGFPSYDTASEQLH 316

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 317 EAGYDAYITGLCFISM 332


>gi|296219599|ref|XP_002755955.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Callithrix
           jacchus]
          Length = 639

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 34/136 (25%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L+  + + T 
Sbjct: 262 EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTC 317

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 318 VFPRLLDTKLMASTRPFKDIINNTSLAELEKRLKETPFSPPKVESAEGFPSYDTASEQLH 377

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 378 EAGYDAYITGLCFISM 393


>gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424]
 gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5'
           exonuclease [Cupriavidus taiwanensis LMG 19424]
          Length = 939

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 45/155 (29%), Gaps = 39/155 (25%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLCPNGRK 54
           R      +  D ETT LD    +++ I             + +            P+   
Sbjct: 352 RIESAPLVAIDTETTSLDPMQAQLVGISLSAAPGEACYIPVAHRG----------PDVAG 401

Query: 55  NSPEALKLHG-ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
                   HG ++ EF         +      +  + +   +  N K+D+        ++
Sbjct: 402 LPE-----HGQLSREF---------VLERMRAWLEDASRPKLGQNLKYDIHVFANHGIKL 447

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                      DT+  +        + ++SL +R 
Sbjct: 448 ------RGVAHDTMLQSYVLASHRNHGMDSLAERL 476


>gi|270012558|gb|EFA09006.1| hypothetical protein TcasGA2_TC006714 [Tribolium castaneum]
          Length = 1185

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 17/110 (15%)

Query: 84   WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN---D 140
              F  +    ++ H  K D   IN          + P ++ DT+           +    
Sbjct: 1074 LRFLLDSGVIFVGHGLKNDFRVINLV--------VPPEQVADTV----HLFHLPHHRMVS 1121

Query: 141  LNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
            L  L   + G+ I   + H ++ D+     +Y K     +Q   G    E
Sbjct: 1122 LRFLAWHFLGVKIQSET-HDSVEDARAALHLYKKYKQLDAQSKVGEALAE 1170


>gi|85859868|ref|YP_462070.1| ATP-dependent helicase DinG [Syntrophus aciditrophicus SB]
 gi|85722959|gb|ABC77902.1| ATP-dependent helicase, dinG family [Syntrophus aciditrophicus SB]
          Length = 917

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 11/98 (11%)

Query: 17  TGLDS-KNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLH-GITDEFLKDK 73
           TGL   + +RI EI A +   D+S+  R F   +         E  + H  I+ E LKD 
Sbjct: 19  TGLKEDQGNRIYEIAATILSRDHSR--RDFSSLVRYGYLT---ERERYHSNISRENLKDP 73

Query: 74  PSFSSIFSEFWDFFNEQNAEWI---AHNAKFDVGFINA 108
           P    + S    F   Q    +    H     + F   
Sbjct: 74  PPAEEVASRLSSFLAGQAFILVLDPHHVLDLVLRFCVR 111


>gi|308235956|ref|NP_001184102.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Xenopus
           (Silurana) tropicalis]
          Length = 632

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 35/136 (25%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS I        +      + HN   D+     +      D L+  + +   
Sbjct: 261 EELDDAVGFSRIIQA----ISSSGKLVVGHNMLLDIMHTIHQFFCQLPDELNEFKEVTNC 316

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R          +P         L  L KR                      +    H
Sbjct: 317 VFPRVLDTKLMASTNPFKEIIYNTSLAELEKRLKEAPFKPPKVDSAEGFPSYNTASEQLH 376

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 377 EAGYDAYITGLCFISM 392


>gi|294789122|ref|ZP_06754361.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
 gi|294482863|gb|EFG30551.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
          Length = 926

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 30/151 (19%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +R    R+I  D ET  LD    +++ I                           P A  
Sbjct: 346 VRLQSCRQIGLDTETNSLDPMTAKLVGISMAFAAGD---------------AVYIPVA-- 388

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
                   L ++  +  I      F  ++N   I  N K+D        +    D     
Sbjct: 389 ------HTLAEQLDWQEISGSLKPFLEDKNLAKIGQNLKYD----QHIFKNHGIDL--QG 436

Query: 122 RIIDTLSIARRKHPSSRNDLNSLC-KRYGIT 151
              D +  +        ++L+ L  +  G+ 
Sbjct: 437 IAGDAMLASYIVESHLSHNLDDLAMRWLGLE 467


>gi|197246532|gb|AAI69159.1| Unknown (protein for IMAGE:8898488) [Xenopus (Silurana) tropicalis]
          Length = 525

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 35/136 (25%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS I        +      + HN   D+     +      D L+  + +   
Sbjct: 261 EELDDAVGFSRIIQA----ISSSGKLVVGHNMLLDIMHTIHQFFCQLPDELNEFKEVTNC 316

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R          +P         L  L KR                      +    H
Sbjct: 317 VFPRVLDTKLMASTNPFKEIIYNTSLAELEKRLKEAPFKPPKVDSAEGFPSYNTASEQLH 376

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 377 EAGYDAYITGLCFISM 392


>gi|167945239|ref|ZP_02532313.1| ribonuclease T [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 41

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 2  IRKNKMR---KIVFDIETTGLDSKNDRIIEIGA 31
          I  ++ R    IV D+ET G D+K D ++EI A
Sbjct: 9  IIADRFRGYLPIVVDVETGGFDAKQDALLEIAA 41


>gi|115530723|emb|CAL49352.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Xenopus
           (Silurana) tropicalis]
          Length = 519

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 35/136 (25%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS I        +      + HN   D+     +      D L+  + +   
Sbjct: 261 EELDDAVGFSRIIQA----ISSSGKLVVGHNMLLDIMHTIHQFFCQLPDELNEFKEVTNC 316

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R          +P         L  L KR                      +    H
Sbjct: 317 VFPRVLDTKLMASTNPFKEIIYNTSLAELEKRLKEAPFKPPKVDSAEGFPSYNTASEQLH 376

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 377 EAGYDAYITGLCFISM 392


>gi|89273974|emb|CAJ81781.1| Novel protein similar to poly(A)-specific ribonuclease
           (deadenylation nuclease) [Xenopus (Silurana) tropicalis]
          Length = 424

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 35/136 (25%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS I        +      + HN   D+     +      D L+  + +   
Sbjct: 53  EELDDAVGFSRIIQA----ISSSGKLVVGHNMLLDIMHTIHQFFCQLPDELNEFKEVTNC 108

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R          +P         L  L KR                      +    H
Sbjct: 109 VFPRVLDTKLMASTNPFKEIIYNTSLAELEKRLKEAPFKPPKVDSAEGFPSYNTASEQLH 168

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 169 EAGYDAYITGLCFISM 184


>gi|226288322|gb|EEH43834.1| RNA exonuclease [Paracoccidioides brasiliensis Pb18]
          Length = 734

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 26/200 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E    +  +  +  +  V   D           + P  +       +  GIT E L 
Sbjct: 349 LDCEMCITEGGSSELTRVSLVSW-DGEVVLDE---LVKPE-KPIIDYLTRFSGITQEMLD 403

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
              +  +   +            I H+   D+  +           L    IIDT     
Sbjct: 404 PVTTRLANVQQKLLLLLTPKTILIGHSLNSDLSALK----------LTHPFIIDTS---- 449

Query: 132 RKHPSSRN-----DLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGSQINFG 184
             +P  R       L  L ++Y G+ I      H ++ D+  + ++  +    G +    
Sbjct: 450 IIYPHPRGTPLKLSLKWLSQKYLGMEIQKGQTGHDSIEDARAVLELVKQKCEKGERWGTS 509

Query: 185 FKTNEDRFFKEEKKTVPNIS 204
             ++E  F +  + TVP  S
Sbjct: 510 EASSESIFRRLSRATVPGRS 529


>gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1]
 gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1]
          Length = 947

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 66/241 (27%), Gaps = 58/241 (24%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + + N       D ETT LD     I+ I                + + P      P   
Sbjct: 364 LAKINAAELTALDTETTSLDEMRAEIVGI---------------SLSVEPGAAAYIP--- 405

Query: 61  KLHGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                      D P       +      +  +     +  + K+D           N   
Sbjct: 406 -----LRHAGPDAPEQLPADEVLQRLKPWLEDAARPKLGQHVKYDRHVF------ANAGI 454

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRY----GITISH---RSKHG----------- 159
                + DT+  +        + L SL  R+    GI+      +  H            
Sbjct: 455 EVHGYVHDTMLQSYVLEVHRPHGLASLALRHTNRTGISYEDLCGKGAHQIPFAQVPVDKA 514

Query: 160 ---ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
              A  D+    DV  +++    Q N G +      ++ E  T   +  ++R+  L    
Sbjct: 515 AAYACEDADQTLDV-HRVLWPQLQANDGLR----GVYELEIATSEALFRIERNGVLIDAA 569

Query: 217 T 217
           T
Sbjct: 570 T 570


>gi|225683202|gb|EEH21486.1| RNA exonuclease [Paracoccidioides brasiliensis Pb03]
          Length = 734

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 26/200 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E    +  +  +  +  V   D           + P  +       +  GIT E L 
Sbjct: 349 LDCEMCITEGGSSELTRVSLVSW-DGEVVLDE---LVKPE-KPIIDYLTRFSGITQEMLD 403

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
              +  +   +            I H+   D+  +           L    IIDT     
Sbjct: 404 PVTTRLANVQQKLLLLLTPKTILIGHSLNSDLSALK----------LTHPFIIDTS---- 449

Query: 132 RKHPSSRN-----DLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGSQINFG 184
             +P  R       L  L ++Y G+ I      H ++ D+  + ++  +    G +    
Sbjct: 450 IIYPHPRGTPLKLSLKWLSQKYLGMEIQKGQTGHDSIEDARAVLELVKQKCEKGERWGTS 509

Query: 185 FKTNEDRFFKEEKKTVPNIS 204
             ++E  F +  + TVP  S
Sbjct: 510 EASSESIFRRLSRATVPGRS 529


>gi|332526049|ref|ZP_08402187.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
 gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
          Length = 915

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 39/146 (26%), Gaps = 26/146 (17%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R      +  D ET  L+    RI+ I                 ++ P          +L
Sbjct: 333 RLQAAELVAIDTETDSLEPMKARIVGISFAVEPGRG-------AYV-PLAHAGPDAPEQL 384

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                          ++ +    +  + +   +  N K+D           N        
Sbjct: 385 ------------PLDAVLARLKPWLEDASRAKLGQNLKYDRHVF------ANAGIALAGV 426

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
             DT+  +        + L SL +R+
Sbjct: 427 RHDTMLESYVLEAHKPHSLESLAERH 452


>gi|330843716|ref|XP_003293793.1| hypothetical protein DICPUDRAFT_84316 [Dictyostelium purpureum]
 gi|325075846|gb|EGC29688.1| hypothetical protein DICPUDRAFT_84316 [Dictyostelium purpureum]
          Length = 244

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 23/112 (20%)

Query: 41  NRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK 100
              F   + P    +S  A  +HG T++ L +                   A  IAHN K
Sbjct: 151 GSHFYKLINPTTTVSSASAS-IHGHTNKSLAE-----------------SGAYIIAHNEK 192

Query: 101 FDVGFINAELQRINKDPLDPSRII---DTLSIARRKHP--SSRNDLNSLCKR 147
           FD G + +++ +           I   D++ I +R          ++SL   
Sbjct: 193 FDRGILASQIGKTAASAPSMFPSIVFVDSIPIFKRLLKKCEGGYSMSSLIDH 244


>gi|332845320|ref|XP_003315023.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Pan
           troglodytes]
          Length = 593

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 33/136 (24%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L   + + T 
Sbjct: 216 EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTC 271

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 272 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLH 331

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 332 EAGYDAYITGLCFISM 347


>gi|332845318|ref|XP_003315022.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Pan
           troglodytes]
          Length = 578

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 33/136 (24%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L   + + T 
Sbjct: 201 EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTC 256

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 257 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLH 316

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 317 EAGYDAYITGLCFISM 332


>gi|332845316|ref|XP_510832.3| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Pan
           troglodytes]
          Length = 639

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 33/136 (24%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L   + + T 
Sbjct: 262 EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTC 317

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 318 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLH 377

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 378 EAGYDAYITGLCFISM 393


>gi|332240355|ref|XP_003269353.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Nomascus
           leucogenys]
          Length = 593

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 33/136 (24%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L   + + T 
Sbjct: 216 EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTC 271

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 272 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLH 331

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 332 EAGYDAYITGLCFISM 347


>gi|332240353|ref|XP_003269352.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Nomascus
           leucogenys]
          Length = 578

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 33/136 (24%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L   + + T 
Sbjct: 201 EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTC 256

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 257 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLH 316

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 317 EAGYDAYITGLCFISM 332


>gi|332240351|ref|XP_003269351.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Nomascus
           leucogenys]
          Length = 639

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 33/136 (24%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L   + + T 
Sbjct: 262 EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTC 317

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 318 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLH 377

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 378 EAGYDAYITGLCFISM 393


>gi|331648300|ref|ZP_08349389.1| putative DNA polymerase (P45) [Escherichia coli M605]
 gi|331042849|gb|EGI14990.1| putative DNA polymerase (P45) [Escherichia coli M605]
          Length = 687

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN 142
            ++   +       HN+ FD   +   + R+        R  DT+  A          L 
Sbjct: 57  LYEAIADPETLLYFHNSHFDRTVLRYAMPRL---APPVERWRDTMVQA--LAHGLPGSLG 111

Query: 143 SLCKRYGIT 151
            LC+  G+ 
Sbjct: 112 ELCEILGVP 120


>gi|194389110|dbj|BAG61572.1| unnamed protein product [Homo sapiens]
          Length = 464

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 33/136 (24%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L   + + T 
Sbjct: 87  EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTC 142

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 143 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLH 202

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 203 EAGYDAYITGLCFISM 218


>gi|194377130|dbj|BAG63126.1| unnamed protein product [Homo sapiens]
          Length = 593

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 33/136 (24%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L   + + T 
Sbjct: 216 EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTC 271

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 272 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLH 331

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 332 EAGYDAYITGLCFISM 347


>gi|197333695|ref|NP_001127949.1| poly(A)-specific ribonuclease PARN isoform 2 [Homo sapiens]
 gi|194375568|dbj|BAG56729.1| unnamed protein product [Homo sapiens]
          Length = 578

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 33/136 (24%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L   + + T 
Sbjct: 201 EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTC 256

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 257 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLH 316

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 317 EAGYDAYITGLCFISM 332


>gi|194742880|ref|XP_001953928.1| GF16992 [Drosophila ananassae]
 gi|190626965|gb|EDV42489.1| GF16992 [Drosophila ananassae]
          Length = 2224

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 70/208 (33%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT-FQVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 254 LAFDIETTKLPLKFPDAQTDQIMMISYMIDGQGYLITNREIISSDVDDFEYTPKPEFEG- 312

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQ--------- 111
               +  + ++ +   +  +F+D   E +    + +N   FD  F+              
Sbjct: 313 ----NFIVYNEENEMHLLQKFFDHIMEVRPHIVVTYNGDFFDWPFVETRAAVYDLDMKQE 368

Query: 112 ------RINKDPLDPSRIIDTLSIARR--KHPSSRNDLNSLCK---RYG-ITISHRSKHG 159
                 R       PS  +D L   +R    P     L ++ K   RY  + +       
Sbjct: 369 IGFSKVRDGNYLSRPSIHMDCLCWVKRDSYLPVGSQGLKAVAKAKLRYDPVELDPEDMCR 428

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 429 MAVEQPQVLANYSVSDAVATYYLYMKYV 456


>gi|119605517|gb|EAW85111.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
           CRA_b [Homo sapiens]
          Length = 640

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 33/136 (24%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L   + + T 
Sbjct: 263 EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTC 318

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 319 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLH 378

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 379 EAGYDAYITGLCFISM 394


>gi|85544056|pdb|2A1R|A Chain A, Crystal Structure Of Parn Nuclease Domain
 gi|85544057|pdb|2A1R|B Chain B, Crystal Structure Of Parn Nuclease Domain
 gi|85544060|pdb|2A1S|A Chain A, Crystal Structure Of Native Parn Nuclease Domain
 gi|85544061|pdb|2A1S|B Chain B, Crystal Structure Of Native Parn Nuclease Domain
 gi|85544062|pdb|2A1S|C Chain C, Crystal Structure Of Native Parn Nuclease Domain
 gi|85544063|pdb|2A1S|D Chain D, Crystal Structure Of Native Parn Nuclease Domain
          Length = 430

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 33/136 (24%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L   + + T 
Sbjct: 262 EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTC 317

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 318 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLH 377

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 378 EAGYDAYITGLCFISM 393


>gi|197102834|ref|NP_001125357.1| poly(A)-specific ribonuclease PARN [Pongo abelii]
 gi|60390294|sp|Q5RC51|PARN_PONAB RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
           Full=Polyadenylate-specific ribonuclease
 gi|55727812|emb|CAH90659.1| hypothetical protein [Pongo abelii]
          Length = 639

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 33/136 (24%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L   + + T 
Sbjct: 262 EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTC 317

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 318 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFSPPKVESAEGFPSYDTASEQLH 377

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 378 EAGYDAYITGLCFISM 393


>gi|4505611|ref|NP_002573.1| poly(A)-specific ribonuclease PARN isoform 1 [Homo sapiens]
 gi|60390262|sp|O95453|PARN_HUMAN RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
           Full=Deadenylating nuclease; AltName: Full=Deadenylation
           nuclease; AltName: Full=Polyadenylate-specific
           ribonuclease
 gi|3776076|emb|CAA06683.1| poly(A)-specific ribonuclease [Homo sapiens]
 gi|29477165|gb|AAH50029.1| PARN protein [Homo sapiens]
 gi|119605516|gb|EAW85110.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
           CRA_a [Homo sapiens]
 gi|189054660|dbj|BAG37510.1| unnamed protein product [Homo sapiens]
 gi|325463607|gb|ADZ15574.1| poly(A)-specific ribonuclease (deadenylation nuclease) [synthetic
           construct]
          Length = 639

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 33/136 (24%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L   + + T 
Sbjct: 262 EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTC 317

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R           P         L  L KR                      +    H
Sbjct: 318 VFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLH 377

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 378 EAGYDAYITGLCFISM 393


>gi|322789347|gb|EFZ14659.1| hypothetical protein SINV_08892 [Solenopsis invicta]
          Length = 2261

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 16/126 (12%)

Query: 1   MIRKNKMRKIVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT-FQVFLCPNGR 53
           MI   +   + +DIETT L     DS  D+I+ I   ++   Y  TNR      +     
Sbjct: 257 MIEPPEPIVLAYDIETTKLPLKFPDSSIDQIMMISYMIDGEGYLITNRELISADIENFEY 316

Query: 54  KNSPEAL-KLHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAEL 110
              PE            + ++P+  +  ++F+D  NE +   ++ +N   FD  F+ A  
Sbjct: 317 TPKPEFEGPFT------VFNEPNEKAAITKFFDHINEIRPHIFVTYNGDFFDWPFVEARA 370

Query: 111 QRINKD 116
              N D
Sbjct: 371 AIHNMD 376


>gi|291224529|ref|XP_002732256.1| PREDICTED: putative RNA exonuclease NEF-sp-like, partial
           [Saccoglossus kowalevskii]
          Length = 467

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 61/180 (33%), Gaps = 22/180 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL- 70
            D E      K   +  I  V+          +   + P  R       +  G+T E L 
Sbjct: 224 LDCEMC-QTKKGHELTRISLVDEKYNVL----YDTLVKPK-RPIIDYLTQYSGVTKEMLD 277

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT--LS 128
             +     +  +        +A  + H+ + D+  I      +          IDT  L 
Sbjct: 278 PIETRLKDVQQKLISLL-PPDAILVGHSLESDLQAIKMYHPNV----------IDTSVLF 326

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-IKMMVGGSQINFGFKT 187
           I R +H  S  +L+++  +  I       H ++ D++    +  +K+  G S  ++   T
Sbjct: 327 IGRNQHKLSLRNLSAVYLKKSIQ-GGIDGHDSIEDANAAMKLVQLKIEKGPSLQSYHDMT 385


>gi|268558090|ref|XP_002637035.1| Hypothetical protein CBG09528 [Caenorhabditis briggsae]
          Length = 211

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 32/174 (18%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-------SPE 58
           + R I  D E TGL+ +   + EI  +       T  T    +    ++          +
Sbjct: 32  EQRIIWIDCEMTGLNVEKQTLCEIAVIVTDSELNTIATGPDIVIHQPKEVLDNMEEWPRK 91

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAELQRIN 114
               +G+ ++ +  K S +    E  +F         +    ++   D  FI   + ++ 
Sbjct: 92  TFLENGLMEKIIDSKYSMNKAEDEVIEFLKLHALPGKSPIAGNSIYMDRLFIKKYMPKL- 150

Query: 115 KDPLDPSRIIDTLSIA---RRKHPSSRNDLNSLCKRYGITISHRSK--HGALLD 163
            D     R ID  +I    +R +P  ++               R    H A  D
Sbjct: 151 -DEFAHYRCIDVSTIKGLVQRWYPDFKH--------------PRKACTHRAYDD 189


>gi|194429286|ref|ZP_03061813.1| DNA polymerase [Escherichia coli B171]
 gi|194412694|gb|EDX28989.1| DNA polymerase [Escherichia coli B171]
          Length = 687

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN 142
            ++   +       HN+ FD   +   + R+        R  DT+  A          L 
Sbjct: 57  LYEAIADPETLLYFHNSHFDRTVLRYAMPRL---APPVERWRDTMVQA--LAHGLPGSLG 111

Query: 143 SLCKRYGIT 151
            LC+  G+ 
Sbjct: 112 ELCEVLGVP 120


>gi|91775826|ref|YP_545582.1| oligoribonuclease [Methylobacillus flagellatus KT]
 gi|91709813|gb|ABE49741.1| Exonuclease [Methylobacillus flagellatus KT]
          Length = 183

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 1  MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          M+ ++    I  D+E +GL   +DRI+E+ AV
Sbjct: 1  MMPQHNDNLIWLDMEMSGLQPDSDRILEVAAV 32


>gi|156367382|ref|XP_001627396.1| predicted protein [Nematostella vectensis]
 gi|156214305|gb|EDO35296.1| predicted protein [Nematostella vectensis]
          Length = 239

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 9/84 (10%)

Query: 94  WIAHNA-KFDVGFINAELQRINKDPLDPSRII---DTLSIARRKHPSSRN-DLNSLCKR- 147
            +AHN   FD   I     +  +        +   D L   R+         L+ L +  
Sbjct: 133 LVAHNCHSFDAPRIVHNTPQQQQADEFSGLDLYSGDPLVAGRKYFKRKDGIKLSDLYRET 192

Query: 148 YGITISHRSKHGALLDSHLLSDVY 171
           +G      + H AL D   L +V 
Sbjct: 193 FGCEF---NAHDALEDCRTLREVL 213


>gi|254418724|ref|ZP_05032448.1| hypothetical protein BBAL3_1034 [Brevundimonas sp. BAL3]
 gi|196184901|gb|EDX79877.1| hypothetical protein BBAL3_1034 [Brevundimonas sp. BAL3]
          Length = 181

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 41/182 (22%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLC------------PNGR 53
           M  ++ D+ET G       ++ +GAV       +    F+  +             P   
Sbjct: 1   MNDVMIDMETKGTRV-GCVVLSLGAVYFDPVSGRLGDEFEAVINIRSCRALGLHEDPETA 59

Query: 54  ----KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
               + SPEA ++  +T+           +   F DF  +                +   
Sbjct: 60  AWWDRQSPEARQI--LTNVETA-AMDLPEVLEAFTDFLRDHGN-------------LQTV 103

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRND------LNSLCKRYGITISHRSKHGALLD 163
               N    DP+ +I   ++ R+  P + N+      L ++ +     I   + H AL D
Sbjct: 104 RIWGNGADFDPAILIHLYALTRKMQPWAYNNSRCFRTLKNIAQ-AEEPIRIGTHHNALDD 162

Query: 164 SH 165
           + 
Sbjct: 163 AK 164


>gi|148236825|ref|NP_001081143.1| poly(A)-specific ribonuclease PARN [Xenopus laevis]
 gi|46329632|gb|AAH68919.1| Parn-A protein [Xenopus laevis]
          Length = 631

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 35/136 (25%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS I        +      + HN   DV     +      D L+  + +   
Sbjct: 261 EELDDAVGFSRIIQA----ISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNC 316

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R          +P         L  L KR                      +    H
Sbjct: 317 VFPRVLDTKLMASTNPFKEIIYNTSLAELEKRLKEAPFKPPKVDSAEGFQSYNTASEQPH 376

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 377 EAGYDAYITGLCFISM 392


>gi|323159211|gb|EFZ45201.1| DNA-directed DNA polymerase [Escherichia coli E128010]
          Length = 687

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN 142
            ++   +       HN+ FD   +   + R+        R  DT+  A          L 
Sbjct: 57  LYEAIADPETLLYFHNSHFDRTVLRYAMPRL---APPVERWRDTMVQA--LAHGLPGSLG 111

Query: 143 SLCKRYGIT 151
            LC+  G+ 
Sbjct: 112 ELCEVLGVP 120


>gi|294787985|ref|ZP_06753229.1| putative ATP-dependent DNA helicase, UvrD/REP family [Simonsiella
           muelleri ATCC 29453]
 gi|294484278|gb|EFG31961.1| putative ATP-dependent DNA helicase, UvrD/REP family [Simonsiella
           muelleri ATCC 29453]
          Length = 1602

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 61/183 (33%), Gaps = 50/183 (27%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M     D+ET   DS N +I +IGA+         +           + S     +    
Sbjct: 1   MTIAYIDLET---DSNNQKIRDIGAICG------EKELHTH------QISELISSI---- 41

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIID 125
                          +  DF          HN    D   + AEL +I+K   D   IID
Sbjct: 42  ---------------QAADFI-------CGHNFLHHDFPHLRAELAQIHKTEKD---IID 76

Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
           TL ++    P+     L+   K+     S+ +    LLD  + + +    +    ++   
Sbjct: 77  TLMLSPLLFPARPYHALDKDYKQA-FEESNNNP---LLDCRITAQLLKSEINAFFRLPEN 132

Query: 185 FKT 187
            +T
Sbjct: 133 LQT 135


>gi|118354790|ref|XP_001010656.1| exonuclease family protein [Tetrahymena thermophila]
 gi|89292423|gb|EAR90411.1| exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 190

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 32/169 (18%)

Query: 13  DIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK----NSPEALKLH---G 64
           D E TGL+   ND+IIEI  +               +    ++            H   G
Sbjct: 18  DCEMTGLNFLNNDQIIEIATLLTDGELTQVIKGPELIIQAPKELLESMDEWCTNTHKGSG 77

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINKDPLD 119
           + D+ LK + +      +   F  +       A    ++   D+ FI  ++  +      
Sbjct: 78  LYDKVLKSEVTLQMAEEQVIKFLKDNGIEQKEALLAGNSIHADMKFIQKQMPNLYN--FL 135

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK-----HGALLD 163
             R++D  ++              L KR+   I  ++      H AL D
Sbjct: 136 HYRLVDVSTVK------------ELTKRWNPEILKKAPVKKGGHRALDD 172


>gi|239993904|ref|ZP_04714428.1| DNA polymerase I [Alteromonas macleodii ATCC 27126]
          Length = 930

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 30/157 (19%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           +  K   I FD ETT L+  +  ++  G    ++  +       ++ P          +L
Sbjct: 346 KLEKAELIAFDTETTSLNYMDAELV--GVSFCIEEGE-----AAYV-PVAHDYPDAPAQL 397

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
              + EF+ D            +         +  + K+D   +       N D      
Sbjct: 398 ---SREFVLDA------LKPILE---SDTVIKVGQHIKYDKNVL------ANYDITLNGI 439

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKH 158
             DT+  +   + +  R+D++SL   Y   + H++ H
Sbjct: 440 GFDTMLESYVLNSTAQRHDMDSLALAY---LGHKTIH 473


>gi|218555134|ref|YP_002388047.1| putative DNA polymerase from bacteriophage origin [Escherichia coli
           IAI1]
 gi|218361902|emb|CAQ99502.1| putative DNA polymerase from bacteriophage origin [Escherichia coli
           IAI1]
          Length = 687

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN 142
            ++   +       HN+ FD   +   + R+        R  DT+  A          L 
Sbjct: 57  LYEAIADPETLLYFHNSHFDRTVLRYAMPRL---APPVERWRDTMVQA--LAHGLPGSLG 111

Query: 143 SLCKRYGIT 151
            LC+  G+ 
Sbjct: 112 ELCEVLGVP 120


>gi|195449894|ref|XP_002072273.1| GK22765 [Drosophila willistoni]
 gi|194168358|gb|EDW83259.1| GK22765 [Drosophila willistoni]
          Length = 190

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 30/167 (17%)

Query: 13  DIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRK---NSPEALKLH---GI 65
           D+E TGLD + D+I+E+   +   D +  +      +          +   +K H   G+
Sbjct: 21  DLEMTGLDIQKDKILEVSCLITDKDLNIQSNGLSFAINHPQEVYEQMNEWCIKQHYASGL 80

Query: 66  TDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            D   K   +  +       +      E+      ++   D  F+   +  +NK      
Sbjct: 81  VDSCKKSTVTPEAAEDLILTYLKQNIPEKTCVLAGNSVYMDRLFLYKYMPIVNKYLHYRI 140

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS-----KHGALLD 163
             + T+                L +R+   I  ++      H +L D
Sbjct: 141 VDVSTIKE--------------LARRWNPDIIEKAPKKAFAHRSLDD 173


>gi|329937703|ref|ZP_08287222.1| methyltransferase [Streptomyces griseoaurantiacus M045]
 gi|329303102|gb|EGG46990.1| methyltransferase [Streptomyces griseoaurantiacus M045]
          Length = 223

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 27/182 (14%)

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +T   L + P   ++   F D    +    +A +     G + A L  +  D        
Sbjct: 28  LTSHLLAEHPEERAVLELFADLVRGRGGGPVA-DVGCGTGRVTAHLCGLGLDAFGIDLSP 86

Query: 125 DTLSIARRKHPSSRNDLNS-------------LCKRYG-ITISHRSKHGALLDSHLLSDV 170
             L +ARR HP  R DL S             L   Y  I +          D+ +L+  
Sbjct: 87  GMLEVARRDHPGVRFDLGSMTRLDLPEASMAGLIAWYSLIHVPEEEM-----DT-VLAH- 139

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL---LKRDKPLFTRITKEELD--EHD 225
           + +++  G+ +   F   E    K E      + +    +R   +  R+         H 
Sbjct: 140 FRRVLRPGAPLLLSFHVGEGSTLKTEGYGGHPMKVHVHRRRPDRVIARLDASGFAVERHR 199

Query: 226 KT 227
             
Sbjct: 200 AL 201


>gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As]
          Length = 922

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 42/148 (28%), Gaps = 26/148 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + R +       D ET  LD    R+I I                + + P      P A 
Sbjct: 339 LTRIDAAELTAIDTETDSLDPMRARLIGI---------------SLSVTPGEAAYLPLAH 383

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
              G       ++   + +      +    +   +  NAK+D           N      
Sbjct: 384 AYPG-----APEQLPMAEVLERLRPWLENADKPKLGQNAKYDRHVF------ANAGVTIR 432

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRY 148
               DTL  +        + L+SL  R+
Sbjct: 433 GYAHDTLLESYVIEAHKPHSLDSLVSRH 460


>gi|255284501|ref|ZP_05349056.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
 gi|255264958|gb|EET58163.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
          Length = 353

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 31/131 (23%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           NK   + FDIETTGL +++  +  IGAV    D  +  + F                   
Sbjct: 21  NKSGLLFFDIETTGLSARSSSLYLIGAVSFASDGWQLIQWF------------------- 61

Query: 64  GITDEFLKDKPSFSS-IFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINK-DPLDP 120
                   + P+    + + F  F   + ++ I  N  +FD+ ++  + +     D    
Sbjct: 62  -------AETPAEEEQVLTAFLTF-ARKFSQVIHFNGDRFDIPYLQEKCRAYQLADTFST 113

Query: 121 SRIIDTLSIAR 131
               D   + R
Sbjct: 114 LVSRDLYRMMR 124


>gi|318042056|ref|ZP_07974012.1| DNA polymerase I [Synechococcus sp. CB0101]
          Length = 1020

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 32/148 (21%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLD---------YSKTNRTFQVFLCPNGRKNSPEA 59
            +  D ETT L+     ++ +G                 +   + +    P+     P  
Sbjct: 417 PVALDTETTSLNPFRAELVGVGVAWGEGPADLAYIPIGHRVGSSGET---PDLLSPPPAQ 473

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           L                  + +    +           NAK+D   +     R       
Sbjct: 474 L--------------PLDQVLTALAPWLGSAQHPKALQNAKYDRLILL----RHGLPL-- 513

Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKR 147
              ++DTL     +  ++++ L  L +R
Sbjct: 514 EGVVMDTLLADYLRDANAKHGLELLAQR 541


>gi|326774347|ref|ZP_08233612.1| Methyltransferase type 11 [Streptomyces cf. griseus XylebKG-1]
 gi|326654680|gb|EGE39526.1| Methyltransferase type 11 [Streptomyces cf. griseus XylebKG-1]
          Length = 219

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 32/165 (19%)

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           +T   L + P   +  + F +   +Q    +A +     G I A L ++  D        
Sbjct: 24  LTRHLLDETPEERAALALFANLVRDQGGGPVA-DVGCGTGRITAHLCQLGLDAFGIDLSP 82

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-------------- 170
             + +ARR HP  R DL S+               A  D+ +   V              
Sbjct: 83  GMIEVARRDHPGLRFDLGSMTDL------------AFADASMTGLVAWYSLIHVPDDEIS 130

Query: 171 -----YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
                + +++  G  +  GF   ++   K +      +++    +
Sbjct: 131 SVFAHFQRVLRPGGPLLLGFHVGDEPQLKTQGYGGHPMNVYVHRR 175


>gi|221060476|ref|XP_002260883.1| POM1 homolog [Plasmodium knowlesi strain H]
 gi|193810957|emb|CAQ42855.1| POM1 homolog, putative [Plasmodium knowlesi strain H]
          Length = 1861

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 43/148 (29%)

Query: 12   FDIETTGLDSKNDRI--IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             DIETTGL+  +++I  I+I      +Y      + +F                 IT E 
Sbjct: 1314 LDIETTGLEVFDEKIRLIQIAV---ENYPVII--YDMF----------------NITKE- 1351

Query: 70   LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
                    SI +   +    +    I  N KFD  F+         +      I DT   
Sbjct: 1352 --------SILTGLREILKNEKVVKIIQNGKFDAKFLMH-------NNFQVDNIFDTYIA 1396

Query: 130  ARRKHPSSR---NDLNSLCKRY-GITIS 153
            ++    +       LN++ ++Y  +T+ 
Sbjct: 1397 SKLLDKNKNMYGFKLNNIVEKYLNVTLD 1424


>gi|332088061|gb|EGI93186.1| DNA-directed DNA polymerase [Shigella boydii 5216-82]
          Length = 975

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN 142
            ++           HN+ FD   +   + R+        R  DT+  A          L 
Sbjct: 58  LYEAIAAPETLLYFHNSHFDRTVLRYAMPRL---APPVERWRDTMVQA--LAHGLPGSLG 112

Query: 143 SLCKRYGIT 151
            LC+  G+ 
Sbjct: 113 ELCEILGVP 121


>gi|291283829|ref|YP_003500647.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains
           [Escherichia coli O55:H7 str. CB9615]
 gi|290763702|gb|ADD57663.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains
           [Escherichia coli O55:H7 str. CB9615]
          Length = 687

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN 142
            ++   +       HN+ FD   +   + R+        R  DT+  A          L 
Sbjct: 57  LYEAIADPETLLYFHNSHFDRTVLRYAMPRL---APPVERWRDTMVQA--LAHGLPGSLG 111

Query: 143 SLCKRYGIT 151
            LC+  G+ 
Sbjct: 112 ELCEILGVP 120


>gi|17158708|ref|NP_478219.1| DNA polymerase I [Nostoc sp. PCC 7120]
 gi|17134657|dbj|BAB77215.1| alr7572 [Nostoc sp. PCC 7120]
          Length = 605

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 33/132 (25%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
            ++ +I  DIET G++S   RI  IG ++   YS        F+                
Sbjct: 46  QELSQIFVDIETAGINSFESRIYAIGCMDSRGYSTI------FMD--------------- 84

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HN-AKFDVGFINAELQRINKD-PLDPS 121
                     S + I ++F +  +++N + I  +N   FD+ FI           P   +
Sbjct: 85  ---------ISEAKILTKFINHLSKRNPDVIFTYNGMAFDIPFIITRCNLHGIKHPFKVA 135

Query: 122 RIIDTLSIARRK 133
               T+  A+ +
Sbjct: 136 SKSRTIRTAQVR 147


>gi|301629258|ref|XP_002943761.1| PREDICTED: DNA polymerase I-like [Xenopus (Silurana) tropicalis]
          Length = 931

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 32/142 (22%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET+ LD+   +I+ +                  + P      P       +  E 
Sbjct: 357 VALDTETSALDAMRAQIVGL---------------SFSVQPGEAAYIP-------LRHEG 394

Query: 70  LKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             D P       + +    +  +     +  + K+D           N        + DT
Sbjct: 395 -PDAPVQLPLEQVLARLKPWLEDARHAKLGQHIKYDRHVF------ANHGIEVRGYVHDT 447

Query: 127 LSIARRKHPSSRNDLNSLCKRY 148
           +  +        ++L SL +R+
Sbjct: 448 MLQSYVLEVHKPHNLASLAERH 469


>gi|218886360|ref|YP_002435681.1| transposase-like Mu [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757314|gb|ACL08213.1| Transposase-like Mu [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 728

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 50/149 (33%), Gaps = 19/149 (12%)

Query: 85  DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSL 144
           + + +++A  + ++ +     +       +   L  +R + TL  A        +    L
Sbjct: 513 ELYGKKHAVVVRYDDQRPQSVLVYA---TDGRFLAEAREMQTLHPAAYYLGEGEHR-EQL 568

Query: 145 CKRYGITISHRSKH----GALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200
                I             ALLD+ +        +    Q      ++      E ++ +
Sbjct: 569 ADALAIRREQEKLAGASSRALLDAVV--------IPEHRQRMAQLASDAPAALPEGERDI 620

Query: 201 PNISLLKRDKPLFTRITKEELDEHDKTIQ 229
           P     +R+ P+ T +T +E   HD  + 
Sbjct: 621 P--PPARRELPIPT-VTDDERRAHDAMLA 646


>gi|156369817|ref|XP_001628170.1| predicted protein [Nematostella vectensis]
 gi|156215140|gb|EDO36107.1| predicted protein [Nematostella vectensis]
          Length = 167

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 47/166 (28%), Gaps = 15/166 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D E  G+  +    +   ++   D       + V++ P+    +    +  GI   
Sbjct: 5   PVALDCEMVGVGEEMKSALARCSIVNYDGKVI---YDVYVKPD-EPITDFRTRWSGIRPV 60

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +    S      +       +    + H  +FD+  +      +             L 
Sbjct: 61  HMDRAISLRKARRQAKRLLKNR--VLVGHALQFDLHVLKLNHPELLIRDTSKFIP---LR 115

Query: 129 IARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVY 171
           I    H      L  L  R     I I     H ++ D+     +Y
Sbjct: 116 INAGFHKDVTPSLKKLSSRLVSSDIQIDE---HCSVEDARAAMQLY 158


>gi|104779389|ref|YP_605887.1| DNA polymerase I [Pseudomonas entomophila L48]
 gi|95108376|emb|CAK13070.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Pseudomonas entomophila L48]
          Length = 922

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 34/152 (22%)

Query: 4   KNKMRKI---VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             K+R+     FD ETTGLD++   I+ +                  + PN     P A 
Sbjct: 334 LEKLRQAPLFAFDTETTGLDAQQASIVGL---------------SFAVEPNEAAYVPLA- 377

Query: 61  KLHGITDEFLKDKPS---FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                     +  P+     ++         +     I  NAK+D+  +      I    
Sbjct: 378 -------HDYEGAPAQLDREAVLLALKPLLEDPAKGKIGQNAKYDINILANGSPAI---- 426

Query: 118 LDPSRIIDTLSIARRKHPSS-RNDLNSLCKRY 148
           L      DT+  +     ++ R+D++SL ++Y
Sbjct: 427 LMRGVAYDTMLESYVLDSTATRHDMDSLAQKY 458


>gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Oceanobacter sp. RED65]
 gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65]
          Length = 916

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 33/150 (22%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + +K      D ETT L      I+ I                  + PN     P A   
Sbjct: 333 KLDKAELYAIDTETTSLKYMEAEIVGISLA---------------VAPNEACYIPLA--- 374

Query: 63  HGITDEFLKDKPSFSS---IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
                      P       +  +      ++  + +  N K+D   +      +N     
Sbjct: 375 -----HDYAGAPEQLDRDWVLQKMKPLLEDETPKKVGQNLKYDAHVLKNYDIELNGIA-- 427

Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRY 148
                DT+  +   + + S+++++ L K Y
Sbjct: 428 ----HDTMLESYVLNSTASKHNMDDLAKHY 453


>gi|326573955|gb|EGE23905.1| DNA polymerase I [Moraxella catarrhalis O35E]
          Length = 959

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 22/146 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + N       D ETT ++ ++ +++ I              ++ +  P G     + L  
Sbjct: 367 KLNHTPYFAIDTETTDINWQHAKLVGISVSTAD--------YEGYYIPVGHTADFDVL-- 416

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                  L ++    ++ S F       N   I  + K+D        ++   + + P +
Sbjct: 417 -------LDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD----AHIFKKYGIN-ISPWQ 464

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
           +   L+       ++R+ +++L K Y
Sbjct: 465 MDTMLASYVINAAATRHGMDALAKHY 490


>gi|156936143|ref|YP_001440059.1| DNA polymerase I [Cronobacter sakazakii ATCC BAA-894]
 gi|156534397|gb|ABU79223.1| hypothetical protein ESA_04040 [Cronobacter sakazakii ATCC BAA-894]
          Length = 927

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 77/256 (30%), Gaps = 61/256 (23%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R      +  D ET  LD+    ++ I             +F     P      P A   
Sbjct: 344 RIKNAPVVAVDTETDSLDNLTANLVGI-------------SFAT--EPGLAAYIPVA--- 385

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           H   D    D+ S   +         +++   +  N KFD G +      +         
Sbjct: 386 HDYLDA--PDQLSRDRVLELLKPLLEDESLVKVGQNLKFDRGILQNYGIELRGIAF---- 439

Query: 123 IIDTLSIARRKHP-SSRNDLNSLCKRY----------------------GITISHRSKHG 159
             DT+  +      S R+D++SL  R+                       I +    ++ 
Sbjct: 440 --DTMLESYILDSVSGRHDMDSLSSRWLKHTTITFEQIAGKGKNQLTFNQIDLEQAGRY- 496

Query: 160 ALLDSHLLSDVYIKMMVGGSQ----------INFGFKTNEDRFFKEEKKTVPNISLLKRD 209
           A  D+ +   +++KM     Q          I         R  +   K  P + L    
Sbjct: 497 AAEDADVTLQLHLKMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDPAV-LHAHS 555

Query: 210 KPLFTRITKEELDEHD 225
           + +  ++T+ E   H+
Sbjct: 556 QEIALKLTELEQKAHE 571


>gi|116071085|ref|ZP_01468354.1| DNA polymerase I [Synechococcus sp. BL107]
 gi|116066490|gb|EAU72247.1| DNA polymerase I [Synechococcus sp. BL107]
          Length = 998

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 18/139 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I  D ETT L+     ++ +G      + + N     ++ P G K   E      +T+ 
Sbjct: 399 PIAIDTETTDLNPFKAELVGVGVC----WGEANDAL-AYI-PIGHKPPSE------LTEA 446

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
               +    ++      +           NAK+D   +      +N        +IDTL 
Sbjct: 447 TPPQQLPLETVLMALSPWLASPQHPKALQNAKYDRLILLRHGLTLNGV------VIDTLL 500

Query: 129 IARRKHPSSRNDLNSLCKR 147
               +  ++++ L+ + +R
Sbjct: 501 ADYLRDAAAKHGLDVMSER 519


>gi|315055429|ref|XP_003177089.1| oligoribonuclease [Arthroderma gypseum CBS 118893]
 gi|311338935|gb|EFQ98137.1| oligoribonuclease [Arthroderma gypseum CBS 118893]
          Length = 188

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 13/121 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLC-PNGR--KNS 56
           ++++    +  D E TGLD  ND I+++                F+V +  P     + +
Sbjct: 3   LQRSSDPLVWIDCEMTGLDPANDHIMQVCCYITDAQLNLLEPKGFEVIVHLPQDILDRMN 62

Query: 57  PEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKF-DVGFINA 108
                 H   G+T   L    +     +    +  +    Q    +A N+   D  F+  
Sbjct: 63  AWCTATHGRSGLTAAVLSATTTAEEAANGLLAYIKQHVPKQGTALLAGNSVHADRAFLAQ 122

Query: 109 E 109
            
Sbjct: 123 P 123


>gi|149041581|gb|EDL95422.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_f
          [Rattus norvegicus]
          Length = 154

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAV 32
           R +  D+E TGLD + D+IIE+  +
Sbjct: 41 QRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|26355291|dbj|BAC41132.1| unnamed protein product [Mus musculus]
          Length = 121

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAV 32
           R +  D+E TGLD + D+IIE+  +
Sbjct: 41 QRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|256019641|ref|ZP_05433506.1| phage protein [Shigella sp. D9]
          Length = 190

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 46/199 (23%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC----------PNGRKN 55
           M  ++ D+ET G + K+  I+ IGAV    +     + F   +           P+G   
Sbjct: 1   MNNLMIDLETMGKN-KDAPIVSIGAVFFTPETGDIGQEFYTVVSLESAMGQGATPDGDTI 59

Query: 56  ------SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVG 104
                 SPEA     I D       S S   SE   F N      +  +   + A FD  
Sbjct: 60  LWWLKQSPEARAAICIDDTL-----SISDALSELNHFINRHADNTKYLKVWGNGATFDNV 114

Query: 105 FINAELQRIN-KDPLDPSRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
            +    +R     P       D    +++ R      +           +      +H A
Sbjct: 115 ILRGAYERAGQICPWAYWNDHDVRTIVTLGRFIGFDPK---------MDMPFDGE-RHNA 164

Query: 161 LLDSHLLSD----VYIKMM 175
           L D+   +     ++ K++
Sbjct: 165 LADARHQAKYVSAIWQKLI 183


>gi|90413340|ref|ZP_01221333.1| oligoribonuclease [Photobacterium profundum 3TCK]
 gi|90325582|gb|EAS42051.1| oligoribonuclease [Photobacterium profundum 3TCK]
          Length = 181

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 53/176 (30%), Gaps = 27/176 (15%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKN 55
           +  +    I  D+E TGLD +  +IIEI  +        L         Q        K 
Sbjct: 1   MTISDQNLIWVDLEMTGLDPEIHQIIEIATIVTDAQLNILAEGPVLAIHQS--EAELAKM 58

Query: 56  SPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINA 108
                  H   G+ +   +   +      +   F  +      +    ++   D  F+  
Sbjct: 59  DDWCTNTHTNSGLVERIRQSAFTEEDAIRQTIAFLEQWVPKGASPICGNSIGQDRRFLYK 118

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  + +        + T+  + RR  P        L +      S +  H AL D
Sbjct: 119 HMPELEQYFHYRYLDVSTIKELTRRWQPE-------LLE----GFSKKGSHLALDD 163


>gi|309362296|emb|CAP28460.2| hypothetical protein CBG_08556 [Caenorhabditis briggsae AF16]
          Length = 556

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 35/132 (26%)

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-------QRINKDPLD--PSRIIDTLS 128
              S   +         + HN+  D  ++            R  K   +    ++IDT  
Sbjct: 258 EGISAILEAAMMMRKVIVGHNSLLDAMYMYHYFFSSLPLKYRNFKREFNSLFPKVIDTKI 317

Query: 129 IA---RRKHPSSRNDLNSLCKRYGITISHRS-----------------------KHGALL 162
           +A   R   P   + L  L   +G   S+++                        H A  
Sbjct: 318 LAQVIRIDLPGVGDSLERLGDYFGTEKSNKTVPPELRGYIGPWMNPLDDDSENYYHNAGF 377

Query: 163 DSHLLSDVYIKM 174
           DS++  +V++K+
Sbjct: 378 DSYITGEVFLKL 389


>gi|328792689|ref|XP_001121548.2| PREDICTED: probable oligoribonuclease-like [Apis mellifera]
          Length = 197

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 46/161 (28%), Gaps = 30/161 (18%)

Query: 18  GLDSKNDRIIEIGAV--------ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           GLD    +I+EI  V           D +         L            K  G+  E 
Sbjct: 25  GLDINTSQILEIACVITDKNLKTVSKDLNIVIHQSDEILNNMNDWCLATHQK-TGLIHES 83

Query: 70  LKDKPSFSSI----FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
              K +              +  E        +   D  F++  +  +N       RIID
Sbjct: 84  RLSKITIQDAEQILLKYLKTYVKEATCPLAGSSVYIDRMFLHKYMPLVNNYL--HYRIID 141

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITIS---HRSKHGALLD 163
           T +I              L KR+ I I+       H AL D
Sbjct: 142 TSTIK------------ELIKRWNINITILKKDHNHRALSD 170


>gi|289549017|ref|YP_003474005.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
 gi|289182634|gb|ADC89878.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
          Length = 575

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN 142
             +  +++    + HN KFD+ ++           ++P  + DT+  ++      R+ L 
Sbjct: 63  LKELLSQKG--VVGHNLKFDLKYLYRYH-------IEPYAVFDTMVASQLLAELDRHSLQ 113

Query: 143 SLCKRY 148
           S+   Y
Sbjct: 114 SVAMHY 119


>gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 930

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 32/137 (23%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETTGLD+    I+  G    ++  K       +  P    +  +AL++  I    L+
Sbjct: 361 FDTETTGLDALVADIV--GLSFAIEKGK------AYYVPTP-DSREQALEIINIFKPILE 411

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           D P+   I                  N K+D+  ++    ++           DT+    
Sbjct: 412 D-PAIQKI----------------GQNIKYDILLLSRYDVKVKGALF------DTMLAHY 448

Query: 132 RKHPSSRNDLNSLCKRY 148
              P +R+ ++ L + Y
Sbjct: 449 LIDPDTRHGMDVLAENY 465


>gi|326576276|gb|EGE26191.1| DNA polymerase I [Moraxella catarrhalis CO72]
          Length = 956

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 22/146 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + N       D ETT ++ ++ +++ I              ++ +  P G     + L  
Sbjct: 364 KLNHTPYFAIDTETTDINWQHAKLVGISVSTAD--------YEGYYIPVGHTADFDVL-- 413

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                  L ++    ++ S F       N   I  + K+D        ++   + + P +
Sbjct: 414 -------LDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD----AHIFKKYGIN-ISPWQ 461

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
           +   L+       ++R+ +++L K Y
Sbjct: 462 MDTMLASYVINAAATRHGMDALAKHY 487


>gi|326568454|gb|EGE18534.1| DNA polymerase I [Moraxella catarrhalis BC7]
          Length = 956

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 22/146 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + N       D ETT ++ ++ +++ I              ++ +  P G     + L  
Sbjct: 364 KLNHTPYFAIDTETTDINWQHAKLVGISVSTAD--------YEGYYIPVGHTADFDVL-- 413

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                  L ++    ++ S F       N   I  + K+D        ++   + + P +
Sbjct: 414 -------LDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD----AHIFKKYGIN-ISPWQ 461

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
           +   L+       ++R+ +++L K Y
Sbjct: 462 MDTMLASYVINAAATRHGMDALAKHY 487


>gi|326561447|gb|EGE11797.1| DNA polymerase I [Moraxella catarrhalis 46P47B1]
          Length = 959

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 22/146 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + N       D ETT ++ ++ +++ I              ++ +  P G     + L  
Sbjct: 367 KLNHTPYFAIDTETTDINWQHAKLVGISVSTAD--------YEGYYIPVGHTADFDVL-- 416

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                  L ++    ++ S F       N   I  + K+D        ++   + + P +
Sbjct: 417 -------LDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD----AHIFKKYGIN-ISPWQ 464

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
           +   L+       ++R+ +++L K Y
Sbjct: 465 MDTMLASYVINAAATRHGMDALAKHY 490


>gi|326560574|gb|EGE10955.1| DNA polymerase I [Moraxella catarrhalis 103P14B1]
          Length = 959

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 22/146 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + N       D ETT ++ ++ +++ I              ++ +  P G     + L  
Sbjct: 367 KLNHTPYFAIDTETTDINWQHAKLVGISVSTAD--------YEGYYIPVGHTADFDVL-- 416

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                  L ++    ++ S F       N   I  + K+D        ++   + + P +
Sbjct: 417 -------LDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD----AHIFKKYGIN-ISPWQ 464

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
           +   L+       ++R+ +++L K Y
Sbjct: 465 MDTMLASYVINAAATRHGMDALAKHY 490


>gi|186474889|ref|YP_001856359.1| hypothetical protein Bphy_0119 [Burkholderia phymatum STM815]
 gi|184191348|gb|ACC69313.1| conserved hypothetical protein [Burkholderia phymatum STM815]
          Length = 204

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 12/113 (10%)

Query: 93  EWIAHNAKFDVGFINAELQRI-NKDPLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGI 150
            ++A  A FD  F+   + R   + P   S   I TL+ A    P  +      C +   
Sbjct: 97  VFVAMPAGFDFTFMFWYMMRFAGRCPFSWSALDIKTLAFAMTGLPYRK------CIKPRF 150

Query: 151 T----ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT 199
                  H   H AL D+     ++  M+    Q      +  D     +K  
Sbjct: 151 PKHWFDDHPHTHVALDDAIEQGALFCNMLADLRQSQSAVMSEADGDDAGQKPA 203


>gi|326565599|gb|EGE15762.1| DNA polymerase I [Moraxella catarrhalis 12P80B1]
          Length = 959

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 22/146 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + N       D ETT ++ ++ +++ I              ++ +  P G     + L  
Sbjct: 367 KLNHTPYFAIDTETTDINWQHAKLVGISVSTAD--------YEGYYIPVGHTADFDVL-- 416

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                  L ++    ++ S F       N   I  + K+D        ++   + + P +
Sbjct: 417 -------LDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD----AHIFKKYGIN-ISPWQ 464

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
           +   L+       ++R+ +++L K Y
Sbjct: 465 MDTMLASYVINAAATRHGMDALAKHY 490


>gi|149882966|ref|YP_001294903.1| DNA polymerase I [Burkholderia phage BcepNY3]
 gi|148763617|gb|ABR10600.1| DNA polymerase I [Burkholderia phage BcepNY3]
          Length = 656

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 45/147 (30%), Gaps = 22/147 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D ET    S  D + E G    L    T      F  P             G++ 
Sbjct: 4   RLLFLDFET---SSHTD-LTEHGLGRYLADQSTRAYCFTFRLP-------------GMST 46

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L +         E           ++AHNA FD    N  L+R       P   I  +
Sbjct: 47  ADLWE---VGQRVPEVITRHVRAGHLFVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQV 103

Query: 128 SI--ARRKHPSSRNDLNSLCKRYGITI 152
               AR ++      L   C+  G+ +
Sbjct: 104 RCSAARARYNGLPGSLAGACEALGLPV 130


>gi|125578734|gb|EAZ19880.1| hypothetical protein OsJ_35466 [Oryza sativa Japonica Group]
          Length = 522

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 21/143 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D E   + +    +  +  V++      ++     + P     +    +  GIT E
Sbjct: 179 ILALDCEMC-VTAAGFELTRVTLVDIKGEVVLDK----LVKP-ANPITDYNTRFSGITAE 232

Query: 69  FLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L D   +   I  EF    +++    + H+ + D+  +           +    IIDT 
Sbjct: 233 MLADVTTTLQEIQEEFVGLVHKE-TVLVGHSLENDLMALR----------ISHDLIIDTA 281

Query: 128 SIARRKHPSSRND--LNSLCKRY 148
            + +  +   R    L  L K++
Sbjct: 282 VLYKH-NRGHRFKIALRVLAKKF 303


>gi|125536014|gb|EAY82502.1| hypothetical protein OsI_37720 [Oryza sativa Indica Group]
          Length = 522

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 21/143 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D E   + +    +  +  V++      ++     + P     +    +  GIT E
Sbjct: 179 ILALDCEMC-VTAAGFELTRVTLVDIKGEVVLDK----LVKP-ANPITDYNTRFSGITAE 232

Query: 69  FLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L D   +   I  EF    +++    + H+ + D+  +           +    IIDT 
Sbjct: 233 MLADVTTTLQEIQEEFVGLVHKE-TVLVGHSLENDLMALR----------ISHDLIIDTA 281

Query: 128 SIARRKHPSSRND--LNSLCKRY 148
            + +  +   R    L  L K++
Sbjct: 282 VLYKH-NRGHRFKIALRVLAKKF 303


>gi|108862276|gb|ABA96019.2| exonuclease family protein, putative, expressed [Oryza sativa
           Japonica Group]
          Length = 607

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 21/143 (14%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D E   + +    +  +  V++      ++     + P     +    +  GIT E
Sbjct: 253 ILALDCEMC-VTAAGFELTRVTLVDIKGEVVLDK----LVKP-ANPITDYNTRFSGITAE 306

Query: 69  FLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L D   +   I  EF    +++    + H+ + D+  +           +    IIDT 
Sbjct: 307 MLADVTTTLQEIQEEFVGLVHKE-TVLVGHSLENDLMALR----------ISHDLIIDTA 355

Query: 128 SIARRKHPSSRND--LNSLCKRY 148
            + +  +   R    L  L K++
Sbjct: 356 VLYKH-NRGHRFKIALRVLAKKF 377


>gi|297851222|ref|XP_002893492.1| hypothetical protein ARALYDRAFT_890322 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339334|gb|EFH69751.1| hypothetical protein ARALYDRAFT_890322 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 322

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 21/154 (13%)

Query: 76  FSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS----------- 121
               F EF        E+   W+     +D  ++   L      PL  +           
Sbjct: 121 IEEFFKEFTQMILKEKEKKMTWVTFQGSYDKAYLVKGL--TGGKPLPETLEEFDETVERL 178

Query: 122 ---RIIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
              R+ D   +A   +  SSR  L  +   + ++    + H A  DS L + V+ K+   
Sbjct: 179 LGERVYDVKKMAGLCRGLSSRFGLQRIADAFQMSRVGMAHH-AGSDSELTARVFTKLTFD 237

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
             + N   + ++  + ++   T+   +   R +P
Sbjct: 238 LCKRNQSLRPDDLLYQQDLMMTLDLHNRKLRLRP 271


>gi|326562218|gb|EGE12546.1| DNA polymerase I [Moraxella catarrhalis 7169]
          Length = 956

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 22/146 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + N       D ETT ++ ++ +++ I              ++ +  P G     + L  
Sbjct: 364 KLNHTPYFAIDTETTDINWQHAKLVGISVSTAD--------YEGYYIPVGHTADFDVL-- 413

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                  L ++    ++ S F       N   I  + K+D        ++   + + P +
Sbjct: 414 -------LDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD----AHIFKKYGIN-ISPWQ 461

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
           +   L+       ++R+ +++L K Y
Sbjct: 462 MDTMLASYVINAAATRHGMDALAKHY 487


>gi|111222109|ref|YP_712903.1| hypothetical protein FRAAL2687 [Frankia alni ACN14a]
 gi|111149641|emb|CAJ61333.1| hypothetical protein FRAAL2687 [Frankia alni ACN14a]
          Length = 305

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 20/45 (44%)

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           A  +      + + L + + +  +  S+H AL D+     ++ KM
Sbjct: 168 AALRQLGMPYNTDVLFRYFDVPDNPESRHTALGDARAAYALWQKM 212


>gi|49115955|gb|AAH73682.1| Unknown (protein for IMAGE:5572400) [Xenopus laevis]
          Length = 517

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 35/136 (25%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS I        +      + HN   DV     +      D L+  + +   
Sbjct: 261 EELDDAVGFSRIIQA----ISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNC 316

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R          +P         L  L KR                      +    H
Sbjct: 317 VFPRVLDTKLMASTNPFKEIIYNTSLAELEKRLKEAPFKPPKVDSAEGFQSYNTASEQLH 376

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 377 EAGYDAYITGLCFISM 392


>gi|60390587|sp|Q90ZA1|PARN_XENLA RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
           Full=Deadenylating nuclease; AltName: Full=Deadenylation
           nuclease; AltName: Full=Polyadenylate-specific
           ribonuclease; AltName: Full=parn-A
 gi|14495249|gb|AAK64218.1|AF309688_1 poly(A)-specific ribonuclease [Xenopus laevis]
          Length = 631

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 35/136 (25%), Gaps = 33/136 (24%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS I        +      + HN   DV     +      D L+  + +   
Sbjct: 261 EELDDAVGFSRIIQA----ISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNC 316

Query: 128 SIARRK--------HPSS----RNDLNSLCKRYG-----------------ITISHRSKH 158
              R          +P         L  L KR                      +    H
Sbjct: 317 VFPRVLDTKLMASTNPFKEIIYNTSLAELEKRLKEAPFKPPKVDSAEGFQSYNTASEQLH 376

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I M
Sbjct: 377 EAGYDAYITGLCFISM 392


>gi|194437181|ref|ZP_03069279.1| endodeoxyribonuclease [Escherichia coli 101-1]
 gi|194423737|gb|EDX39726.1| endodeoxyribonuclease [Escherichia coli 101-1]
          Length = 190

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 65/201 (32%), Gaps = 50/201 (24%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC----------PNGRKN 55
           M  ++ D+ET G + K+  I+ IGAV    +     + F   +           P+G   
Sbjct: 1   MNNLMIDLETMGKN-KDAPIVSIGAVFFTPETGDIGQEFYTVVSLDSAMKLGATPDGDTI 59

Query: 56  ------SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVG 104
                 SPEA     I D       S S   SE   F N      +  +   + A FD  
Sbjct: 60  LWWLKQSPEARAAICIDDTL-----SISDALSELNHFINRHADNTKYLKVWGNGATFDNV 114

Query: 105 FINAELQRIN-KDPLDPSRIID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            +    +R     P       D     TL  +    P           +  +      +H
Sbjct: 115 ILRGAYERAGQICPWAYWNDHDVRTIVTLGRSIGFDP-----------KMDMPFDGE-RH 162

Query: 159 GALLDSHLLSD----VYIKMM 175
            AL D+   +     ++ K++
Sbjct: 163 NALADARHQAKYVSAIWQKLI 183


>gi|326572008|gb|EGE22010.1| DNA polymerase I [Moraxella catarrhalis BC8]
          Length = 956

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 22/146 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + N       D ETT ++ ++ +++ I              ++ +  P G     + L  
Sbjct: 364 KLNHTPYFAIDTETTDINWQHAKLVGISVSTAD--------YEGYYIPVGHTADFDVL-- 413

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                  L ++    ++ S F       N   I  + K+D        ++   + + P +
Sbjct: 414 -------LDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD----AHIFKKYGIN-ISPWQ 461

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
           +   L+       ++R+ +++L K Y
Sbjct: 462 MDTMLASYVINAAATRHGMDALAKHY 487


>gi|326567172|gb|EGE17294.1| DNA polymerase I [Moraxella catarrhalis BC1]
          Length = 959

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 22/146 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + N       D ETT ++ ++ +++ I              ++ +  P G     + L  
Sbjct: 367 KLNHTPYFAIDTETTDINWQHAKLVGISVSTAD--------YEGYYIPVGHTADFDVL-- 416

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                  L ++    ++ S F       N   I  + K+D        ++   + + P +
Sbjct: 417 -------LDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD----AHIFKKYGIN-ISPWQ 464

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
           +   L+       ++R+ +++L K Y
Sbjct: 465 MDTMLASYVINAAATRHGMDALAKHY 490


>gi|296113895|ref|YP_003627833.1| DNA polymerase I [Moraxella catarrhalis RH4]
 gi|295921589|gb|ADG61940.1| DNA polymerase I [Moraxella catarrhalis RH4]
          Length = 959

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 22/146 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + N       D ETT ++ ++ +++ I              ++ +  P G     + L  
Sbjct: 367 KLNHTPYFAIDTETTDINWQHAKLVGISVSTAD--------YEGYYIPVGHTADFDVL-- 416

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                  L ++    ++ S F       N   I  + K+D        ++   + + P +
Sbjct: 417 -------LDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD----AHIFKKYGIN-ISPWQ 464

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
           +   L+       ++R+ +++L K Y
Sbjct: 465 MDTMLASYVINAAATRHGMDALAKHY 490


>gi|225374888|ref|ZP_03752109.1| hypothetical protein ROSEINA2194_00511 [Roseburia inulinivorans DSM
           16841]
 gi|225213271|gb|EEG95625.1| hypothetical protein ROSEINA2194_00511 [Roseburia inulinivorans DSM
           16841]
          Length = 164

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 34/116 (29%), Gaps = 25/116 (21%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FDIETTG       +  IG    +  +                          IT  F 
Sbjct: 42  FFDIETTGFSPTYTFLYLIGCAHRVGDNFI------------------------ITQYFA 77

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIID 125
           + K    +I S F             +   FD+ ++  + ++     P D    ID
Sbjct: 78  ETKEEEGAILSAFLQELCHYQTVISFNGLGFDIPYLKKKCEKYGLTHPFDEKDYID 133


>gi|326574946|gb|EGE24876.1| DNA polymerase I [Moraxella catarrhalis 101P30B1]
          Length = 959

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 22/146 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + N       D ETT ++ ++ +++ I              ++ +  P G     + L  
Sbjct: 367 KLNHTPYFAIDTETTDINWQHAKLVGISVSTAD--------YEGYYIPVGHTADFDVL-- 416

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                  L ++    ++ S F       N   I  + K+D        ++   + + P +
Sbjct: 417 -------LDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD----AHIFKKYGIN-ISPWQ 464

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
           +   L+       ++R+ +++L K Y
Sbjct: 465 MDTMLASYVINAAATRHGMDALAKHY 490


>gi|332280772|ref|ZP_08393185.1| endodeoxyribonuclease [Shigella sp. D9]
 gi|332103124|gb|EGJ06470.1| endodeoxyribonuclease [Shigella sp. D9]
          Length = 191

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 46/199 (23%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC----------PNGRKN 55
           M  ++ D+ET G + K+  I+ IGAV    +     + F   +           P+G   
Sbjct: 2   MNNLMIDLETMGKN-KDAPIVSIGAVFFTPETGDIGQEFYTVVSLESAMGQGATPDGDTI 60

Query: 56  ------SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVG 104
                 SPEA     I D       S S   SE   F N      +  +   + A FD  
Sbjct: 61  LWWLKQSPEARAAICIDDTL-----SISDALSELNHFINRHADNTKYLKVWGNGATFDNV 115

Query: 105 FINAELQRIN-KDPLDPSRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
            +    +R     P       D    +++ R      +           +      +H A
Sbjct: 116 ILRGAYERAGQICPWAYWNDHDVRTIVTLGRFIGFDPK---------MDMPFDGE-RHNA 165

Query: 161 LLDSHLLSD----VYIKMM 175
           L D+   +     ++ K++
Sbjct: 166 LADARHQAKYVSAIWQKLI 184


>gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12]
 gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12]
          Length = 934

 Score = 37.9 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 42/148 (28%), Gaps = 26/148 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + R +       D ET  LD    R++ I                + + P      P A 
Sbjct: 351 LTRIDAAELTAIDTETDSLDPMRARLVGI---------------SLSVAPGEAAYLPLAH 395

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
              G       ++   + +      +    +   +  NAK+D           N      
Sbjct: 396 AYPG-----APEQLPMAEVLERLRPWLENADKPKLGQNAKYDRHVF------ANAGVTIR 444

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRY 148
               DTL  +        + L+SL  R+
Sbjct: 445 GYAHDTLLESYVIEAHKPHSLDSLVSRH 472


>gi|167625547|ref|YP_001675841.1| oligoribonuclease [Shewanella halifaxensis HAW-EB4]
 gi|167355569|gb|ABZ78182.1| Exonuclease RNase T and DNA polymerase III [Shewanella halifaxensis
           HAW-EB4]
          Length = 181

 Score = 37.9 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 20/141 (14%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQV-----FLCPNGRKNSPEAL 60
            D+E TGLD   D+IIE+  +        +        +Q       +    +K+  E+ 
Sbjct: 11  VDLEMTGLDPAVDKIIEMATIVTDKELNIIAQGPVIAIYQSDEQLALMDDWNQKHHGES- 69

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRINKD 116
              G+ D       +      +   F ++      +    ++   D  F+N  +  +   
Sbjct: 70  ---GLVDRVKASTTNEEQAIEQTIAFLSQYVPAGVSPMCGNSIGQDRRFLNRYMPALEDY 126

Query: 117 PLDPSRIIDTL-SIARRKHPS 136
               +  + T+  + RR  PS
Sbjct: 127 FHYRNIDVSTIKELVRRWEPS 147


>gi|268556560|ref|XP_002636269.1| Hypothetical protein CBG08556 [Caenorhabditis briggsae]
          Length = 564

 Score = 37.9 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 35/132 (26%)

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-------QRINKDPLD--PSRIIDTLS 128
              S   +         + HN+  D  ++            R  K   +    ++IDT  
Sbjct: 258 EGISAILEAAMMMRKVIVGHNSLLDAMYMYHYFFSSLPLKYRNFKREFNSLFPKVIDTKI 317

Query: 129 IA---RRKHPSSRNDLNSLCKRYGITISHRS-----------------------KHGALL 162
           +A   R   P   + L  L   +G   S+++                        H A  
Sbjct: 318 LAQVIRIDLPGVGDSLERLGDYFGTEKSNKTVPPELRGYIGPWMNPLDDDSENYYHNAGF 377

Query: 163 DSHLLSDVYIKM 174
           DS++  +V++K+
Sbjct: 378 DSYITGEVFLKL 389


>gi|306826828|ref|ZP_07460129.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782]
 gi|304430991|gb|EFM33999.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782]
          Length = 643

 Score = 37.9 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 5/88 (5%)

Query: 77  SSIFSEFWD-FFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDTLSIARRK 133
              F EF        +A + A N  F+   ++   Q+    K   DP    D +  A+  
Sbjct: 49  KEEFPEFLKNHILNADATFWAWNTVFERICLSMYFQKKGWSKGYFDPKNWKDIMVHAQEL 108

Query: 134 HPSSRNDLNSLCKRYGITISHRSKHGAL 161
                  L       G+     ++  AL
Sbjct: 109 --GLPASLERCASYLGLEEQKDTRGKAL 134


>gi|212550625|ref|YP_002308942.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548863|dbj|BAG83531.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 928

 Score = 37.9 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 31/134 (23%)

Query: 33  ELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
           +L++  K    F   +      +  P + +L GI         +     + F  FF  + 
Sbjct: 344 DLINKIKIQNFFSFNIKTTEAIEIDPLSAELVGI-------AFTLQEGEAYFLPFFGRKR 396

Query: 92  AEW-----------------IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH 134
                               +  N K+D+  +     R+N          D L      +
Sbjct: 397 DIIPTVQLFKEIFESDTILKVGQNLKYDINVLKKYGIRMNYPIF------DILIAHYLIN 450

Query: 135 PSSRNDLNSLCKRY 148
           P   ++L+ L K Y
Sbjct: 451 PEYLHNLDFLAKTY 464


>gi|207857412|ref|YP_002244063.1| phage protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|206709215|emb|CAR33548.1| phage protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 189

 Score = 37.9 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 60/198 (30%), Gaps = 45/198 (22%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFL----------CPNGRKN 55
           M  ++ D+ET G    N  ++ IGAV       +    F   +           P+G   
Sbjct: 1   MNNLMVDLETMGKKP-NAPVVSIGAVFFDPQSGEIGPEFYTAVSLESAMEQGAVPDGDTI 59

Query: 56  ------SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-----IAHNAKFDVG 104
                 SPEA            D  S ++   EF DF      +        + A FD  
Sbjct: 60  LWWLRQSPEARA------AICADAVSVTTALIEFNDFITCHADDLKYLKVWGNGANFDNV 113

Query: 105 FINAELQRINKDPLDPSRI---IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161
            +    +R +   L   R    + T+    R                 +       H AL
Sbjct: 114 ILRGAFERASLPCLWNYRNDHDVRTMVTLGRAIGFDPKR--------DMPFEG-DMHNAL 164

Query: 162 LDSHLLSD----VYIKMM 175
            D+   +     ++ K++
Sbjct: 165 ADARHQAKYVSAIWQKLI 182


>gi|157865303|ref|XP_001681359.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68124655|emb|CAJ02461.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 931

 Score = 37.9 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 65/201 (32%), Gaps = 28/201 (13%)

Query: 10  IVFDIETT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           +  D E     G +S   R   I  +      K      + + P+ R       +  GI 
Sbjct: 452 VALDCEMVEVEGGESALARATLIDVLT----GKVV--LDLLVKPHQRITDYR-TRFSGID 504

Query: 67  DEFLKDKPSFSSIFS--EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
              L+  P  +++           + +   + H+ + D               +    ++
Sbjct: 505 AATLQ--PVSTTLADCQHALQRIIDTHTFVVGHSLENDFKACKC---------VPNCYVL 553

Query: 125 DTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181
           DT       HP+    +N L  L +RY         H +++D+ + +++    ++ G   
Sbjct: 554 DT--TWLFPHPAGLPYKNALRFLAQRYLQRRIQHGSHDSVIDALVSAELTQLKLINGPSF 611

Query: 182 NFGFKTNEDRFFKEEKKTVPN 202
               + +      E   + P+
Sbjct: 612 GMRPRVSVLGLITEAAGSAPD 632


>gi|256822066|ref|YP_003146029.1| hypothetical protein Kkor_0841 [Kangiella koreensis DSM 16069]
 gi|256795605|gb|ACV26261.1| conserved hypothetical protein [Kangiella koreensis DSM 16069]
          Length = 255

 Score = 37.9 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 20/134 (14%)

Query: 7   MRKIVFDIET-----TG-----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56
           M   VFDIET     TG      +  +D  + + A+E L Y +T  TFQ          S
Sbjct: 1   MNIFVFDIETIPDIETGRLLNEFEGLSDEDV-VTAMEHLRYQQTGNTFQPLYLQKVVAIS 59

Query: 57  PEALKLHG--ITDEFLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQR 112
                 HG  +T   L D+ +    I   F+D  +      ++ N   FD+  ++    +
Sbjct: 60  AVFR--HGDKLTVWSLGDEQADEKEIIQRFFDGIDRFTPTIVSWNGSGFDLPVLHYRAMK 117

Query: 113 INKDPLDPSRIIDT 126
            N       +  DT
Sbjct: 118 HNIAAP---KYWDT 128


>gi|23505474|ref|NP_700403.1| Endodeoxyribonuclease [Salmonella phage ST64B]
 gi|167995268|ref|ZP_02576358.1| endodeoxyribonuclease [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|23379221|gb|AAL25908.1| Sb30 [Salmonella phage ST64B]
 gi|205327029|gb|EDZ13793.1| endodeoxyribonuclease [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261247216|emb|CBG25040.1| predicted phage protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994047|gb|ACY88932.1| endodeoxyribonuclease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158560|emb|CBW18071.1| predicted bacteriophage protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|332988937|gb|AEF07920.1| hypothetical protein STMUK_2027 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 189

 Score = 37.9 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 62/199 (31%), Gaps = 47/199 (23%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFL----------CPNGRKN 55
           M  ++ D+ET G    N  ++ IGAV       +    F   +           P+G   
Sbjct: 1   MNNLMIDLETMGKKP-NAPVVSIGAVFFDPQSGEIGPEFYTAVSLESAMEQGAVPDGDTI 59

Query: 56  ------SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-----IAHNAKFDVG 104
                 SPEA            D  S ++   EF DF      +        + A FD  
Sbjct: 60  LWWLRQSPEARA------AICADAVSVTTALIEFNDFITCHADDLKYLKVWGNGANFDNV 113

Query: 105 FINAELQRINKDPLDPSRIID----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160
            +    +R +   L   R        +++ R      + D         +       H A
Sbjct: 114 ILRGAFERASLPCLWNYRNDHDVRTMVTLGRAIGFDPKRD---------MPFEG-DMHNA 163

Query: 161 LLDSHLLSD----VYIKMM 175
           L D+   +     ++ K++
Sbjct: 164 LADARHQAKYVSAIWQKLI 182


>gi|303245934|ref|ZP_07332216.1| glycosyl transferase family 2 [Desulfovibrio fructosovorans JJ]
 gi|302492717|gb|EFL52585.1| glycosyl transferase family 2 [Desulfovibrio fructosovorans JJ]
          Length = 545

 Score = 37.9 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 19/116 (16%)

Query: 113 INKDPLDPSRIIDTLSIARRKHPSS--------RNDLNSLCKRYGITISHRSKHGA---- 160
              +   P++ I  L   R   P          R  +++LC+R G+ +  R  HGA    
Sbjct: 114 CFYNLTYPNKHIYFLDDTRYGLPGQDQSAMAAYRRSIDALCQRIGVNLFRRVWHGAKAGM 173

Query: 161 LLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
           + D       ++  + G  +  F F   E+   K +++ +      +   P F   
Sbjct: 174 IND-------FLAFLAGERREGFEFSNFEETTPKLDERYIIVFDADQNPFPDFVEP 222


>gi|262277731|ref|ZP_06055524.1| DNA polymerase I [alpha proteobacterium HIMB114]
 gi|262224834|gb|EEY75293.1| DNA polymerase I [alpha proteobacterium HIMB114]
          Length = 925

 Score = 37.9 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 48/145 (33%), Gaps = 25/145 (17%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + +       D ET  L+S+   ++ I      +        + +  P G KN       
Sbjct: 336 QADNQGYFAIDTETNSLNSQKADLVGISLAINEN--------EAYYVPVGHKNKQ----- 382

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
               D  LK +     +      +  ++  + +  N K+D+         +         
Sbjct: 383 ----DPNLKKQIKIKELVKVLKPYLEDETVKKVGQNIKYDLKIFLKYGIELK-------S 431

Query: 123 IIDTLSIARRKHPS-SRNDLNSLCK 146
             DT+ ++       +R++L+ L K
Sbjct: 432 FEDTMLLSYSLDAGVNRHNLDLLAK 456


>gi|51260906|gb|AAH79640.1| Eri3 protein [Mus musculus]
          Length = 135

 Score = 37.9 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 14/115 (12%)

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG-FINAELQRI 113
           L GI    +  +PS   +     ++  ++        + ++     +D+   +  +   +
Sbjct: 1   LTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVT-CGDWDLKVMLPGQCHYL 59

Query: 114 NKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISH-RSKHGALLDSH 165
                D  +    L  A         +N L  + K  G+++ H    H  + D  
Sbjct: 60  GLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK--GLSLQHIGRPHSGIDDCK 112


>gi|313668408|ref|YP_004048692.1| DNA helicase [Neisseria lactamica ST-640]
 gi|313005870|emb|CBN87326.1| putative DNA helicase [Neisseria lactamica 020-06]
          Length = 1741

 Score = 37.9 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 38/164 (23%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+E   ++ K D + +IGA          R+F                         
Sbjct: 9   LIIDLE---INPKTDTVFKIGAYRPDLDLGFERSF------------------------- 40

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLS 128
            +D+  F    +E      E     + HN  + D+ ++        +  L    +IDTL 
Sbjct: 41  -RDEEGFRKALAEMLP-LAEGAEWLMGHNFLEHDLPYLKKAAP--GRAWLSL-PVIDTLK 95

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           ++    P +      L K Y I  S  +    L D      ++ 
Sbjct: 96  LSPLAFPQNPYH--RLIKNYKIISSELN--SPLADCRACWQLFQ 135


>gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 957

 Score = 37.9 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 24/157 (15%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLCPNGRK 54
           + N+++ +  D ET  LDS +  ++ +             L + +     QV L P    
Sbjct: 351 KINQVKLVAVDTETDNLDSMSANLVGVSFGLANGDACYIPLTHKE-----QVTLEPQQSD 405

Query: 55  N---SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111
                 EA        E  K++ + ++   E        + + I  N K+D+        
Sbjct: 406 LFAEPAEAETTTSF--ELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANHGV 463

Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
           ++           DT+  +   + + R++++ L  RY
Sbjct: 464 QVEGVAF------DTMLESYTLNSTGRHNMDELADRY 494


>gi|146284105|ref|YP_001174258.1| oligoribonuclease [Pseudomonas stutzeri A1501]
 gi|166216582|sp|A4VR15|ORN_PSEU5 RecName: Full=Oligoribonuclease
 gi|145572310|gb|ABP81416.1| oligoribonuclease [Pseudomonas stutzeri A1501]
 gi|327482422|gb|AEA85732.1| oligoribonuclease [Pseudomonas stutzeri DSM 4166]
          Length = 180

 Score = 37.9 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 3  RKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32
           +N    I  D+E TGLD  ND IIE+  +
Sbjct: 1  MQNPQNLIWIDLEMTGLDPDNDVIIEMATI 30


>gi|226193790|ref|ZP_03789392.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
          catalytic domain protein [Burkholderia pseudomallei
          Pakistan 9]
 gi|225934095|gb|EEH30080.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
          catalytic domain protein [Burkholderia pseudomallei
          Pakistan 9]
          Length = 55

 Score = 37.9 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51
             D+ETTG  +   RI EIG V +   +    T+   + P 
Sbjct: 16 AFVDLETTGGSAAEHRITEIGVVVVN--ANGVSTWTTLVDPQ 55


>gi|149041580|gb|EDL95421.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_e
          [Rattus norvegicus]
          Length = 113

 Score = 37.9 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAV 32
           R +  D+E TGLD + D+IIE+  +
Sbjct: 41 QRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|126698867|ref|YP_001087764.1| two-component sensor histidine kinase [Clostridium difficile 630]
 gi|255100288|ref|ZP_05329265.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-63q42]
 gi|255306227|ref|ZP_05350399.1| two-component sensor histidine kinase [Clostridium difficile ATCC
           43255]
 gi|115250304|emb|CAJ68126.1| Two-component sensor histidine kinase [Clostridium difficile]
          Length = 387

 Score = 37.5 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I K++++K+  D+ET         I E+  ++  +    +R     +   G   S   ++
Sbjct: 161 ISKDELKKVNADLET-----YASSIEELAILKERNR--ISREIHDSV---GHSLSTTIIQ 210

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNE 89
           L+ I ++ LKDKP    +  E  +F  E
Sbjct: 211 LNAI-EKLLKDKPLIYDLVHELREFVTE 237


>gi|261379087|ref|ZP_05983660.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
           protein [Neisseria cinerea ATCC 14685]
 gi|269144466|gb|EEZ70884.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
           protein [Neisseria cinerea ATCC 14685]
          Length = 1736

 Score = 37.5 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 53/167 (31%), Gaps = 44/167 (26%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           ++ D+E   ++ K D + +IGA          R+F                         
Sbjct: 9   LIIDLE---INPKTDTVFKIGAYRPDLDLGFERSF------------------------- 40

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR----IID 125
            + +  F    +E      E     + HN      F+  +L  + K   D +     +ID
Sbjct: 41  -RHEEGFRQALAEMLP-LAEGAEWLMGHN------FLEHDLPYLKKAAPDQAWLSLPVID 92

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
           TL ++    P +      L K Y I  S  +    L D      ++ 
Sbjct: 93  TLKLSPLAFPQNPYH--RLIKNYKIISSELN--SPLADCRACWQLFQ 135


>gi|312378495|gb|EFR25057.1| hypothetical protein AND_09956 [Anopheles darlingi]
          Length = 560

 Score = 37.5 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 45/139 (32%), Gaps = 18/139 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E  G    +  +  I  V      +    +   + P  R       +  GIT+E L+
Sbjct: 385 IDCEMCGTADGSSVLTRISVV----NEEGTPVYDKLVKPFKRITDYR-TRFSGITEEMLR 439

Query: 72  DKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              +  + +  +        +A  I  +   D+  +                +IDT  + 
Sbjct: 440 SVTTRLADVQRDIRALL-PPDAILIGQSLNSDLDAMQMM----------HPYVIDTSIVF 488

Query: 131 RRKH-PSSRNDLNSLCKRY 148
                P+++  L  L K++
Sbjct: 489 NVTGNPATKTKLQVLSKKF 507


>gi|70999440|ref|XP_754439.1| RNA exonuclease Rex2 [Aspergillus fumigatus Af293]
 gi|66852076|gb|EAL92401.1| RNA exonuclease Rex2, putative [Aspergillus fumigatus Af293]
 gi|159127455|gb|EDP52570.1| RNA exonuclease Rex2, putative [Aspergillus fumigatus A1163]
          Length = 250

 Score = 37.5 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 13/131 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRK---NS 56
           + ++    +  D E TGL+ + D I++I                F+  +  +       S
Sbjct: 63  LERSTDPLVWIDCEMTGLNPETDTILQICCYITDANLNLLDPEGFETIIHHDRSVLDSMS 122

Query: 57  PEALKLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINA 108
           P  +  H   G+T   L    + ++       +      + + A    ++   D  F+  
Sbjct: 123 PWCVDTHGRTGLTAAVLASTTNSTTAAESLLAYIQRYVPHPRTALLAGNSVHADKMFLAK 182

Query: 109 ELQRINKDPLD 119
           E  +   + L 
Sbjct: 183 EPYKAVLEWLH 193


>gi|212543255|ref|XP_002151782.1| DNA polymerase epsilon, catalytic subunit A/POL2, putative
           [Penicillium marneffei ATCC 18224]
 gi|210066689|gb|EEA20782.1| DNA polymerase epsilon, catalytic subunit A/POL2, putative
           [Penicillium marneffei ATCC 18224]
          Length = 2224

 Score = 37.5 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 16/117 (13%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEALKL 62
           + FDIETT L     D+  D+I+ I   ++   +  TNR      +        PE    
Sbjct: 283 LAFDIETTKLPLKFPDAVIDQIMMISYMIDGNGFLITNREIVSEDINDFEYTPKPEY--- 339

Query: 63  HGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIA-HNAK-FDVGFINAELQRINKD 116
              +  F+  ++P    +   F+    E     IA +N   FD  F+ A    +  D
Sbjct: 340 ---SGPFVIFNEPDERHVLERFFSHIKEAKPTVIATYNGDFFDWPFVEARASVLGID 393


>gi|159490578|ref|XP_001703250.1| DNA polymerase epsilon catalytic subunit A/1 [Chlamydomonas
           reinhardtii]
 gi|158280174|gb|EDP05932.1| DNA polymerase epsilon catalytic subunit A/1 [Chlamydomonas
           reinhardtii]
          Length = 2367

 Score = 37.5 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 28/132 (21%)

Query: 1   MIRKNKMRKIVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT--------FQV 46
           ++++ + R   FDIETT L     +++ D++  I   ++   Y   NR         F+ 
Sbjct: 293 LLQRAEPRICAFDIETTKLPLQFPNAEYDQVFMISYMLDRQGYLIVNREVVGADIADFEY 352

Query: 47  FLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAK-FDVG 104
              P          K+         +  +   +   F+      Q A ++ +N   FD  
Sbjct: 353 TPKPEF----EGPFKVT--------NAANERELLQAFFSHMRSAQPAIYVTYNGDFFDFP 400

Query: 105 FINAELQRINKD 116
           FI A    +  D
Sbjct: 401 FIEARCAVLGLD 412


>gi|54310437|ref|YP_131457.1| oligoribonuclease [Photobacterium profundum SS9]
 gi|59798036|sp|Q6LM23|ORN_PHOPR RecName: Full=Oligoribonuclease
 gi|46914878|emb|CAG21655.1| putative oligoribonuclease [Photobacterium profundum SS9]
          Length = 181

 Score = 37.5 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 54/176 (30%), Gaps = 27/176 (15%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKN 55
           +  +    I  D+E TGLD +  +IIEI  +        L         Q        K 
Sbjct: 1   MTISDQNLIWVDLEMTGLDPEIHQIIEIATIVTDAQLNILAEGPVLAIHQS--EAELAKM 58

Query: 56  SPEALKLH---GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINA 108
                  H   G+ +   + K +      +   F  +      +    ++   D  F+  
Sbjct: 59  DDWCTNTHTNSGLVERIRQSKFTEEDAIRQTIAFLEQWVPKGASPICGNSIGQDRRFLYK 118

Query: 109 ELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  + +        + T+  + RR  P        L +      S +  H AL D
Sbjct: 119 HMPELEQYFHYRYLDVSTIKELTRRWQPE-------LLE----GFSKKGSHLALDD 163


>gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 996

 Score = 37.5 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 35/150 (23%)

Query: 10  IVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +  D ETT LD  +  ++ +             L + +            G      AL 
Sbjct: 407 VAVDTETTSLDPMSCELVGVSLAITPGRACYIPLQHREPGD---------GDLFGGAAL- 456

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
                   L+ +       +       +     IAHN K+D+  +     R     +D +
Sbjct: 457 --------LQGQIPLDKAIATLKPLLEDDAVLKIAHNMKYDLLVL----ARYG---VDVA 501

Query: 122 RIIDTLSIARRKHPSSRND-LNSL-CKRYG 149
            I DT+ I+        N  L+ L  K  G
Sbjct: 502 PIEDTMLISYTLDTGRNNHGLDELTLKHLG 531


>gi|71891864|ref|YP_277593.1| oligoribonuclease [Candidatus Blochmannia pennsylvanicus str.
          BPEN]
 gi|71795970|gb|AAZ40721.1| oligoribonuclease [Candidatus Blochmannia pennsylvanicus str.
          BPEN]
          Length = 187

 Score = 37.5 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 12 FDIETTGLDSKNDRIIEIG 30
           D+E TGL+ + DRI+EI 
Sbjct: 9  IDLEMTGLNPEWDRILEIA 27


>gi|332531416|ref|ZP_08407320.1| DNA polymerase I [Hylemonella gracilis ATCC 19624]
 gi|332039085|gb|EGI75507.1| DNA polymerase I [Hylemonella gracilis ATCC 19624]
          Length = 924

 Score = 37.5 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 43/161 (26%), Gaps = 36/161 (22%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + R +    +  D ETT LD     I+ I                  + P      P   
Sbjct: 337 LARIDAAELVALDTETTSLDEMVAEIVGI---------------SFSVTPGEAAYIP--- 378

Query: 61  KLHGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                      D P       + ++   +      + +  + K+D           N   
Sbjct: 379 -----LMHDYPDAPAQLPRDEVLAKLKGWLENPAKKKLGQHVKYDRHVF------ANHGI 427

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRY----GITISH 154
                + DT+  +        + L SL +R+    GI    
Sbjct: 428 EVQGYVHDTMLQSYVLEVHKPHGLASLAERHLGRKGINYED 468


>gi|295672197|ref|XP_002796645.1| RNA exonuclease [Paracoccidioides brasiliensis Pb01]
 gi|226283625|gb|EEH39191.1| RNA exonuclease [Paracoccidioides brasiliensis Pb01]
          Length = 734

 Score = 37.5 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 62/200 (31%), Gaps = 26/200 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E    +  +  +  +  V      +        + P  +       +  GIT E L 
Sbjct: 349 LDCEMCITEGGSSELTRVSLVSW--GGEVV--LDELVKPE-KPIIDYLTRFSGITQEMLD 403

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
              +  +   +            I H+   D+  +           L    IIDT     
Sbjct: 404 PVTTRLANVQQKLLLLLTPKTILIGHSLNSDLSALR----------LTHPFIIDTS---- 449

Query: 132 RKHPSSRN-----DLNSLCKRY-GITISHRSK-HGALLDSHLLSDVYIKMMVGGSQINFG 184
             +P  R       L  L ++Y G  I      H ++ D+  + ++  +    G +    
Sbjct: 450 IIYPHPRGTPLKLSLKWLSQKYLGKEIQKGQTGHDSIEDARAVLELVKQKCEKGERWGTS 509

Query: 185 FKTNEDRFFKEEKKTVPNIS 204
             +NE  F +  + TVP  S
Sbjct: 510 EASNESIFRRLSRATVPGRS 529


>gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015]
 gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015]
          Length = 900

 Score = 37.5 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 49/148 (33%), Gaps = 30/148 (20%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETT L+     I+ +      + +        ++ P G        +L         
Sbjct: 325 FDTETTSLNYMQAEIVGVSFAVEYNKA-------AYV-PLGHDYPGAPEQL--------- 367

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                 ++ +       +     +  + K+D   +     R   +        DT+  + 
Sbjct: 368 ---DRDAVLNALKPLLEDTGKAKVGQHLKYDKNVL----ARYGIEL--KGIAHDTMLASY 418

Query: 132 RKHP-SSRNDLNSLCKRYGITISHRSKH 158
             +  + R+D++SL +RY   +   + H
Sbjct: 419 VLNSVAGRHDMDSLAERY---LDRHTVH 443


>gi|119512517|ref|ZP_01631596.1| DNA polymerase I [Nodularia spumigena CCY9414]
 gi|119462824|gb|EAW43782.1| DNA polymerase I [Nodularia spumigena CCY9414]
          Length = 970

 Score = 37.5 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 27/145 (18%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N    + +D ET+ L+ ++  ++ IG                   P+     P A K  
Sbjct: 375 TNPDIPVAWDTETSDLEPRDATLVGIGCCWGTQ-------------PDESAYIPIAHKF- 420

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
                   +  S   +F+E        +      N KFD      +  ++          
Sbjct: 421 -------GENLSQDVVFAELSPILTSADYPKTFQNGKFDRLVFRCQGIKLAGIVF----- 468

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY 148
            DT+  +   +P + ++LN +  RY
Sbjct: 469 -DTMLASYVLNPDTPHNLNDISLRY 492


>gi|330983644|gb|EGH81747.1| hypothetical protein PLA107_01340 [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 167

 Score = 37.5 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 25/159 (15%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGITD 67
           I  D E +G+   +   IEIG V        +  F+  + P       S +A  +HGI+ 
Sbjct: 14  IFVDFEASGIHPDS-YPIEIGIV------GPDFEFEALIQPVRYWTHWSHDAQDMHGISR 66

Query: 68  EFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           + ++ K  + S +  +  D F+ Q     +H   +D  +++   +     P    + I  
Sbjct: 67  DLIESKGMAPSQLCQQLNDRFSGQVLWSDSH---YDALWVDILFEAAGIQPEFEIKDI-M 122

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
             +   K P      +   +           H AL D+ 
Sbjct: 123 AEVDVLKLPDYHGGGDDALE-----------HRALSDAR 150


>gi|331654014|ref|ZP_08355015.1| putative DNA polymerase (P45) [Escherichia coli M718]
 gi|331048863|gb|EGI20939.1| putative DNA polymerase (P45) [Escherichia coli M718]
          Length = 687

 Score = 37.5 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN 142
            ++           HN+ FD   +   + R+        R  DT+  A          L 
Sbjct: 57  LYEAIAAPETLLYFHNSHFDRTVLRYAMPRL---APPVERWRDTMVQA--LAHGLPGSLG 111

Query: 143 SLCKRYGIT 151
            LC+  G+ 
Sbjct: 112 ELCEVLGVP 120


>gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 957

 Score = 37.5 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 20/155 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLCPNGRK 54
           + N+++ +  D ET  LDS +  ++ I             L + +     QV L P    
Sbjct: 351 KINQVKLVAVDTETDNLDSMSANLVGISFGLANGDACYIPLTHKE-----QVTLEPQQSD 405

Query: 55  N-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             + +A      + E  K + + ++  +E        + + I  N K+D+        ++
Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANHGVQV 465

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                      DT+  +   + + R++++ L  RY
Sbjct: 466 AGVAF------DTMLESYTLNSTGRHNMDELADRY 494


>gi|157164466|ref|YP_001467310.1| large-conductance mechanosensitive channel [Campylobacter concisus
           13826]
 gi|112802020|gb|EAT99364.1| WlaX protein [Campylobacter concisus 13826]
          Length = 336

 Score = 37.5 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 23/103 (22%)

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDP------------- 117
           +      I ++F  F N+ N   ++ N + FD+  +     R N +              
Sbjct: 78  EGKDEREIIAKFLKFINDYNPRLVSFNGRGFDLPMLMVRAMRYNLNAAAYYESENKELNK 137

Query: 118 ---------LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT 151
                      P   +D L             L++LC    + 
Sbjct: 138 NKWENYRARYSPKFHLDLLDFISDFGSVRGLKLDTLCASLNLP 180


>gi|302671388|ref|YP_003831348.1| hypothetical protein bpr_I2032 [Butyrivibrio proteoclasticus B316]
 gi|302395861|gb|ADL34766.1| hypothetical protein bpr_I2032 [Butyrivibrio proteoclasticus B316]
          Length = 394

 Score = 37.5 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 28/129 (21%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  DIETTGL  K      IG                +        +PE  K      
Sbjct: 29  KILFIDIETTGLSPKTSEAYLIGVSYYQG--------HTWHIVQLMAETPEHEK------ 74

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDT 126
           E L +   F ++  +F           +  N  +FD+ ++            DP   ID+
Sbjct: 75  EMLTN---FKTLLRDFK--------LLVHFNGNRFDIPYLQGRFAHYELG--DPFEGIDS 121

Query: 127 LSIARRKHP 135
             + ++  P
Sbjct: 122 FDLYKKISP 130


>gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003]
 gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003]
          Length = 913

 Score = 37.5 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 45/140 (32%), Gaps = 27/140 (19%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETT LD    +I+ +       ++        ++ P   +     ++L         
Sbjct: 340 FDTETTSLDPMTAQIVGLSFSVEAGHA-------AYV-PVAHRGPDAPVQL--------- 382

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                  + ++   +      + +  + K+D   +       N          DTL  + 
Sbjct: 383 ---PREEVLAKLKPWLESAQQKKVGQHLKYDEQVL------ANYGIEMRGIEHDTLLQSY 433

Query: 132 RKHPSSRNDLNSLC-KRYGI 150
                  +D+++L  +  G+
Sbjct: 434 VLESHRPHDMDNLALRHLGV 453


>gi|160892583|ref|ZP_02073373.1| hypothetical protein CLOL250_00112 [Clostridium sp. L2-50]
 gi|156865624|gb|EDO59055.1| hypothetical protein CLOL250_00112 [Clostridium sp. L2-50]
          Length = 354

 Score = 37.5 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 26/139 (18%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           +++   + + FDIETTGL +    +  IG             +   L     +       
Sbjct: 18  MKETSDQYLFFDIETTGLSAARSDLYLIG-------------YGTILNNEQLR------- 57

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-LD 119
              IT  F  D  S   I + F +  ++     + +N   FD+ +I  + ++  ++   D
Sbjct: 58  ---ITLLFNDDGCSEPKILAVFKNILSDY-KYLVTYNGDTFDLPYIKEKYRQFRQEISFD 113

Query: 120 PSRIIDTLSIARRKHPSSR 138
               ID     R+     R
Sbjct: 114 SIISIDVYRKIRKYKKLLR 132


>gi|154314837|ref|XP_001556742.1| hypothetical protein BC1G_04760 [Botryotinia fuckeliana B05.10]
 gi|150848298|gb|EDN23491.1| hypothetical protein BC1G_04760 [Botryotinia fuckeliana B05.10]
          Length = 180

 Score = 37.5 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 13/105 (12%)

Query: 15  ETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSP------EALKLHGIT 66
           E TGLD +ND IIEI  V      +      +   +  +                  G+T
Sbjct: 3   EMTGLDVENDVIIEISCVITNGNLEVMDEKGWNAVIHQDQETMDKMDEWCTTTHASTGLT 62

Query: 67  DEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFI 106
            E L    + +        +        + A    ++   D  F+
Sbjct: 63  SEVLSSTTTPTEAAESLLQYIKSWVPEPRRALLAGNSVHADKAFL 107


>gi|307177507|gb|EFN66618.1| Probable oligoribonuclease [Camponotus floridanus]
          Length = 201

 Score = 37.5 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 52/172 (30%), Gaps = 33/172 (19%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD---------YSKTNRTFQVFLCPNGRK 54
           KN+   +  D+E TGL+ +   I+E+  +   +             ++T QV    +   
Sbjct: 25  KNEKHIVWLDMEMTGLEVEQCHILELACLITDEQLKPVSDCLNIIIHQTDQVLENMSNWC 84

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAEL 110
            S       G+ ++    K +      +   +              ++   D  F+   +
Sbjct: 85  KS-------GLINDCRSSKVTLEEAQQKMLQYLQSHVPRGMCPLAGNSIYMDRIFLRKYM 137

Query: 111 QRINKDPLDPSRIIDTLSIARRKH--------PSSRNDLNSLCKRYGITISH 154
             I+         + T+    R+         P  R      C R  I I  
Sbjct: 138 PLIDNYLHYRVIDVSTIKELARRWQPNIDKAVPKKRY-----CHRAAIDIKD 184


>gi|297283531|ref|XP_002808334.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
           PARN-like [Macaca mulatta]
          Length = 596

 Score = 37.5 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 33/139 (23%), Gaps = 36/139 (25%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E L D   FS +     +         I HN   DV     +        L   + + T 
Sbjct: 216 EELNDAVGFSRVIHAIAN----SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTC 271

Query: 128 SIARRKHPSS---------------RNDLNSLCKRYG-ITISH----------------R 155
              R                        L  L KR   I  S                  
Sbjct: 272 VFPRXAFFEDLSFIXKSQLGTDIINNTSLAELEKRLKEIPFSPPKVESAEGFPSYDTASE 331

Query: 156 SKHGALLDSHLLSDVYIKM 174
             H A  D+++    +I M
Sbjct: 332 QLHEAGYDAYITGLCFISM 350


>gi|41057712|ref|NP_958166.1| gp61 [Burkholderia phage Bcep43]
 gi|40737699|gb|AAR89352.1| gp61 [Burkholderia phage Bcep43]
          Length = 656

 Score = 37.5 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 91  NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI--ARRKHPSSRNDLNSLCKRY 148
              ++AHNA FD    N  L+R +     P   I  +    AR ++      L   C+  
Sbjct: 67  GGLFVAHNAPFDFWIWNLILRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGACEAL 126

Query: 149 GITI 152
           G+ +
Sbjct: 127 GLPV 130


>gi|261415282|ref|YP_003248965.1| ATP-dependent DNA helicase, RecQ family [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371738|gb|ACX74483.1| ATP-dependent DNA helicase, RecQ family [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327939|gb|ADL27140.1| ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain
           protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 1655

 Score = 37.5 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 38/131 (29%), Gaps = 9/131 (6%)

Query: 93  EWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT 151
             + HN  + D   +                 +DTL ++    P        L K Y + 
Sbjct: 50  YIVGHNVLRHDAPILRQYFS----IDFPNIHALDTLMLSSLLFPRKPYH--KLRKEY-LH 102

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211
                    L D+ L   +    +       +  +    +F K E    P   L+    P
Sbjct: 103 NEDEPS-NPLEDTKLCKKLLEDCIKKWDNYPWQLQYLLFQFLKNEPGFAPFFELVDTPNP 161

Query: 212 LFTRITKEELD 222
           +  R+   E+ 
Sbjct: 162 IKLRLKLSEIQ 172


>gi|256395105|ref|YP_003116669.1| oligoribonuclease [Catenulispora acidiphila DSM 44928]
 gi|256361331|gb|ACU74828.1| Exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
          Length = 213

 Score = 37.5 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 38/178 (21%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           R +  D E TGLD   D +IE+  +       T+    V         +P A +L G+ +
Sbjct: 4   RLVWIDCEMTGLDLDKDALIEVAVL------VTDSELNVLGDGVDVVVAPPAEELPGLLE 57

Query: 68  EFLK----------------DKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFI 106
             ++                     +        +  E       A+   ++   D GF+
Sbjct: 58  GMVEVVREMHTASGLLEELSSGIPMAEAQERVLAYVREHVPEAGKAQLAGNSVGTDRGFL 117

Query: 107 NAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
             ++  + +        + ++  +ARR +P          + Y         H AL D
Sbjct: 118 ARDMPELEQHLHYRIVDVSSIKELARRWYP----------RVYFNAPKKTGNHRALGD 165


>gi|237840817|ref|XP_002369706.1| exonuclease domain-containing protein [Toxoplasma gondii ME49]
 gi|56783233|gb|AAW28929.1| nucleolar mitotic checkpoint protein [Toxoplasma gondii]
 gi|95007426|emb|CAJ20646.1| nucleolar mitotic checkpoint protein [Toxoplasma gondii RH]
 gi|211967370|gb|EEB02566.1| exonuclease domain-containing protein [Toxoplasma gondii ME49]
 gi|221482924|gb|EEE21255.1| exonuclease domain-containing protein, putative [Toxoplasma gondii
           GT1]
 gi|221503285|gb|EEE28983.1| exonuclease domain-containing protein, putative [Toxoplasma gondii
           VEG]
          Length = 361

 Score = 37.5 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 10/166 (6%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E  G     +  I   A   +   K       F+ P+ R        + G++   
Sbjct: 59  VSLDCEMVGCGPDGN--ISALAQVSICDEKGEVLLDEFVMPDMRITDFRH-HVTGLSWSI 115

Query: 70  LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           L+D   SF++  +   D    +    + H  + D+  +  +            + +    
Sbjct: 116 LRDRGISFNAARTLVTDII--RGKVLVGHALQHDLQVLALDHPVHMIRDTSKYKPLRPPG 173

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
           +AR   P     L  L   +         H ++ D     D+Y K 
Sbjct: 174 LARNAVP----SLRRLTSHWLNREIQTGIHNSVEDCRAAMDLYRKF 215


>gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229]
 gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247]
 gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247]
 gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229]
          Length = 926

 Score = 37.5 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD     I+ +                  + P      P A        +  
Sbjct: 352 AFDTETTSLDPMRAEIVGL---------------SFSVEPGHAAYVPVA----HRGPDMP 392

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P    + ++   +  +   + +  + K+D   +      +N          DTL  +
Sbjct: 393 AQLPR-DEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE------HDTLLES 445

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 446 YVLESHRTHDMDSLALRHLGV 466


>gi|303317210|ref|XP_003068607.1| exonuclease family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240108288|gb|EER26462.1| exonuclease family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320038531|gb|EFW20466.1| RNA exonuclease Rex2 [Coccidioides posadasii str. Silveira]
          Length = 190

 Score = 37.5 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 13/131 (9%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEA 59
           + ++    +  D E TGLD + D I++I                F V +       S  +
Sbjct: 3   LTRSNQPLVWIDCEMTGLDPETDHILQISCFLTDADLNLLEPEGFHVTVHQPQYILSSMS 62

Query: 60  ---LKLH---GITDEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINA 108
              +  H   G+T   L    + S   S    +        + A    ++   D  F+  
Sbjct: 63  SWCVSTHGHSGLTAAVLDSTTTPSEAASALLAYIQKYIPESRTALLAGNSVHADRAFLAR 122

Query: 109 ELQRINKDPLD 119
           +  +   D L 
Sbjct: 123 KPYKTVVDWLH 133


>gi|307822745|ref|ZP_07652976.1| Exonuclease RNase T and DNA polymerase III [Methylobacter
          tundripaludum SV96]
 gi|307736349|gb|EFO07195.1| Exonuclease RNase T and DNA polymerase III [Methylobacter
          tundripaludum SV96]
          Length = 181

 Score = 37.5 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT 40
           D+E TGLD  ND IIEI  +        
Sbjct: 11 IDLEMTGLDPDNDLIIEIATIITDKDLNI 39


>gi|19074460|ref|NP_585966.1| putative EXONUCLEASE [Encephalitozoon cuniculi GB-M1]
 gi|19069102|emb|CAD25570.1| putative EXONUCLEASE [Encephalitozoon cuniculi GB-M1]
          Length = 370

 Score = 37.5 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 78/233 (33%), Gaps = 25/233 (10%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  D+E      +     E G V ++D   +    +   + P          K  G+T 
Sbjct: 147 IVALDVE----KVRTKMGKEPGRVTMVDCNGEVI--YDKIIKPK-EPVVDYLTKYSGLTK 199

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E +        + +E  +F    N   I H  + D+  +           L   +IIDT 
Sbjct: 200 EVVDRGIDIEIVRNEVLNFIGT-NTVIIGHGIENDLSSLR----------LYHDKIIDTA 248

Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY-IKMMVGGSQINFGF 185
            +     P  R   L  L + Y     H   H + +D+    ++  +K+       + G 
Sbjct: 249 HLF--LSPLGRKISLAQLARTYLAKDIHVETHDSRVDAVTCLELLSVKIQYMLRVTDPGC 306

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238
              + +   E KK   ++    R        +  +L +H K+ +   +  +W 
Sbjct: 307 PKLKIQAIIE-KKCASDLLKHDRGHLNIAACSYRDLAKHLKSYRK-RRECLWM 357


>gi|307543934|ref|YP_003896413.1| hypothetical protein HELO_1345 [Halomonas elongata DSM 2581]
 gi|307215958|emb|CBV41228.1| hypothetical protein HELO_1345 [Halomonas elongata DSM 2581]
          Length = 162

 Score = 37.5 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 20/167 (11%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLHGITDEF 69
            DIE +G   +    IEIG                 + P        P+A  LHGI+   
Sbjct: 7   LDIEASGF-GRGSYPIEIGLARAD-----GSVCAFLIQPLDEWTHWDPKAELLHGISRNR 60

Query: 70  L-KDKPSFSSIFSEFWDFFNEQNAEWIAHN--AKFDVGFINAELQRINKDPLDPSRIIDT 126
           L ++      +     D  ++     IA++    +D  +++         P      +  
Sbjct: 61  LQREGYPVRQVACWLNDELSD---IGIAYSDSWGYDNTWLSLLFHHAGMLPAFRLEALRR 117

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
           L    +    S     ++ +  GI      +H A  D+ LL   Y +
Sbjct: 118 LLSEAQLERWSDTK-ETIIREQGIL-----RHRAGEDALLLQQTYQR 158


>gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3]
 gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3]
          Length = 921

 Score = 37.5 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 32/138 (23%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET G+D         G V +    K N  + V            ++++        
Sbjct: 351 AFDTETDGIDPLKA-----GLVGMSFAVKENEAWYV-------PVPANSVEV-------- 390

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                 + +   F        +  I  N KFD+  +     ++           DT+   
Sbjct: 391 ------AKVVERFSPALQNPKSLKIGQNIKFDILVLRKYNVKVAGPLF------DTMIAH 438

Query: 131 RRKHPSSRNDLNSLCKRY 148
              +P  R+ ++ L + Y
Sbjct: 439 YLLNPELRHGMDYLAETY 456


>gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
 gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
          Length = 923

 Score = 37.5 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD     I+ +                  + P      P A        +  
Sbjct: 349 AFDTETTSLDPMRAEIVGL---------------SFSVEPGHAAYVPVA----HRGPDMP 389

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P    + ++   +  +   + +  + K+D   +      +N          DTL  +
Sbjct: 390 AQLPR-DEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE------HDTLLES 442

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 443 YVLESHRTHDMDSLALRHLGV 463


>gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305]
 gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305]
          Length = 923

 Score = 37.5 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD     I+ +                  + P      P A        +  
Sbjct: 349 AFDTETTSLDPMRAEIVGL---------------SFSVEPGHAAYVPVA----HRGPDMP 389

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P    + ++   +  +   + +  + K+D   +      +N          DTL  +
Sbjct: 390 AQLPR-DEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE------HDTLLES 442

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 443 YVLESHRTHDMDSLALRHLGV 463


>gi|241957087|ref|XP_002421263.1| good for full dbp5 activity protein 2 homologue, putative;
           transcriptional repressor, putative [Candida
           dubliniensis CD36]
 gi|223644607|emb|CAX40595.1| good for full dbp5 activity protein 2 homologue, putative [Candida
           dubliniensis CD36]
          Length = 318

 Score = 37.5 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 10/94 (10%)

Query: 80  FSEFWD-FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138
             +  D + ++ +  ++ H    ++       + I  +       IDT+ +  +   S  
Sbjct: 185 LQKLLDKYIDQMDGIFVGHQVSSELR----YFKSIGVNCKPDVHTIDTMKLM-QLSKSGG 239

Query: 139 NDLNSLCKRYGITISHRSKHGALLDSH--LLSDV 170
           N L +  +   I   H   H A  D++  LL+ +
Sbjct: 240 NSLWATLRELDIPYGH--LHNAGNDAYFTLLAAL 271


>gi|218671595|ref|ZP_03521265.1| DNA polymerase I [Rhizobium etli GR56]
          Length = 452

 Score = 37.5 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 60/189 (31%), Gaps = 36/189 (19%)

Query: 10  IVFDIETTGLDSKNDRII--EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + FD ETT LD+    ++   +   + +      +    ++ P   KN    L       
Sbjct: 256 VAFDTETTSLDAMQAELVGFSMAIADNVADPTGTKIRAAYV-PLAHKNGVGDLL----GG 310

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              +++               +     +A N K+D   +    +R   +        DT+
Sbjct: 311 GLAENQVPMRDALPRLKALLEDAAVLKVAQNLKYDYLLM----KRYGIETKSFD---DTM 363

Query: 128 SIARRKHPS-SRNDLNSLCKRY-----------------GITIS----HRSKHGALLDSH 165
            I+         + ++ L +++                  +T       R+ H A  D+ 
Sbjct: 364 LISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSGRANVTFDLVDIDRATHYAAEDAD 423

Query: 166 LLSDVYIKM 174
           +   +++ +
Sbjct: 424 VTLRLWLVL 432


>gi|218783107|ref|YP_002434425.1| hypothetical protein Dalk_5288 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218764491|gb|ACL06957.1| conserved hypothetical protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 248

 Score = 37.5 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 46/151 (30%), Gaps = 40/151 (26%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M R+ K +    DIET+GLD     I  IG     D  K    F  ++   G       +
Sbjct: 76  MYRRFKGKTAFLDIETSGLDQDMHEITVIGVY---DGQKV---FS-YVN--GFNLPDFEI 126

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                                       E +     + A FD+ FI      I      P
Sbjct: 127 D-------------------------IAEYDMVITFNGAMFDLPFIRRSFPSITL----P 157

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGIT 151
              ID +   R+     R  L  + K  GI+
Sbjct: 158 EGHIDLMHALRKL--GYRGGLKKIEKDLGIS 186


>gi|191173996|ref|ZP_03035513.1| DNA polymerase [Escherichia coli F11]
 gi|190905687|gb|EDV65309.1| DNA polymerase [Escherichia coli F11]
 gi|324014350|gb|EGB83569.1| hypothetical protein HMPREF9533_01582 [Escherichia coli MS 60-1]
          Length = 687

 Score = 37.5 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN 142
            ++           HN+ FD   +   + R+        R  DT+  A          L 
Sbjct: 57  LYEAIAAPETLLYFHNSHFDRTVLRYAMPRL---APPVERWRDTMVQA--LAHGLPGSLG 111

Query: 143 SLCKRYGIT 151
            LC+  G+ 
Sbjct: 112 ELCEVLGVP 120


>gi|262163836|ref|ZP_06031576.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
 gi|262027816|gb|EEY46481.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
          Length = 45

 Score = 37.5 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +++C+   + +  +  H AL D+   + V++++  G
Sbjct: 2   DAICRHLDLPLQDK--HDALQDAIAAALVFVRLTKG 35


>gi|123966537|ref|YP_001011618.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
 gi|123200903|gb|ABM72511.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
          Length = 976

 Score = 37.5 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 23/139 (16%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET  L+  +  ++ IG        ++N  F +   P G ++           DE
Sbjct: 382 IVALDTETNSLNPLDAELVGIGFCL---GEESNDLFYI---PLGHQSQK---------DE 426

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              ++ +   +F     +      E    N KFD          ++          DTL 
Sbjct: 427 M--NQLAIEDVFLNLRTWIESPEKEKTLQNCKFDRQIFYNHGLNLSGVTF------DTLL 478

Query: 129 IARRKHPSSRNDLNSLCKR 147
                +   ++ L+ +C R
Sbjct: 479 ADYILNNQEKHGLSEICFR 497


>gi|156379361|ref|XP_001631426.1| predicted protein [Nematostella vectensis]
 gi|156218466|gb|EDO39363.1| predicted protein [Nematostella vectensis]
          Length = 171

 Score = 37.5 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 46/159 (28%), Gaps = 22/159 (13%)

Query: 17  TGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLH------GITDEF 69
           TGLD     IIE+   V   +         + +                     G+T   
Sbjct: 2   TGLDIDTCHIIEMACLVTDENLKIIAEGPNLVIHQPDDVLDAMGEWCTRQHGESGLTAAV 61

Query: 70  LKDKPSFSSIFSEFWDFFNEQ----NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                S          F ++     +     ++   D  F++  + +  +        + 
Sbjct: 62  KASDISLQKAEDIMVGFVSQHVTPGSCPLAGNSVHADKRFLDKYMPKFMEQLHYRIVDVS 121

Query: 126 TL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           T+  + RR +P          K +G   +   +H AL D
Sbjct: 122 TVKELCRRWYP----------KEFGAAPAKSGQHRALDD 150


>gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
 gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
          Length = 923

 Score = 37.5 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    +I+ +                  + P      P A        +  
Sbjct: 349 AFDTETTSLDPMRAQIVGL---------------SFSVEPGHAAYVPVA----HRGPDMP 389

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              PS   + ++   +  +   + +  + K+D   +      +N          DTL  +
Sbjct: 390 AQLPS-DEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE------HDTLLES 442

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 443 YVLESHRTHDMDSLALRHLGV 463


>gi|194100568|ref|YP_002003893.1| gp54 [Mycobacterium phage Nigel]
 gi|192758284|gb|ACF05057.1| gp54 [Mycobacterium phage Nigel]
          Length = 618

 Score = 37.5 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 49/154 (31%), Gaps = 33/154 (21%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIET GL    D    I  V +     T    +  +    R  +  A     I  + 
Sbjct: 57  VAMDIETPGL----DNAFTINCVTMAWEMPTTGHVRTVILDPSRNRADHA-----IVRDM 107

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           ++     +                   HNA FD   +         D  D ++I+DTL I
Sbjct: 108 VEHAGRLA------------------FHNAPFDTPPLLHNQL---FDRPDINKIVDTLLI 146

Query: 130 ARRKHP--SSRNDLNSL-CKRYGITISHRSKHGA 160
           +R   P      +L +L  +  G+         A
Sbjct: 147 SRFAVPDVMVPKNLTALSVRHLGLDDDKGGLERA 180


>gi|13097555|gb|AAH03502.1| REXO2 protein [Homo sapiens]
          Length = 79

 Score = 37.5 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 7  MRKIVFDIETTGLDSKNDRIIEIGAV 32
           R +  D+E TGLD + D+IIE+  +
Sbjct: 41 QRMVWVDLEMTGLDIEKDQIIEMACL 66


>gi|218187360|gb|EEC69787.1| hypothetical protein OsI_00071 [Oryza sativa Indica Group]
          Length = 302

 Score = 37.5 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 56/204 (27%), Gaps = 35/204 (17%)

Query: 21  SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80
           + +D  +++ A   +   +       F+ P+    +       GI  E L+D  +     
Sbjct: 114 AGSDGSLDVCARVCVVDEQERVVLDTFVKPHI-PVTHYRYDTTGIRPEHLRDAMTPKQAA 172

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND 140
               +                           +N +P   +R     +     +      
Sbjct: 173 RRVQELL-------------------------LNGEPAWKARSSRGRARILTSYSRLSYS 207

Query: 141 L--NSLCKR-YGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEK 197
           L   +L    Y I I+ R  H    D      +Y +M  G          +         
Sbjct: 208 LKYRTLADLGYHIQIAGRHHHP-YDDCVAALRLYRRM-RGARP---HTCRDAGVGPHAPP 262

Query: 198 KTVPNISLLKRDKPLFTRITKEEL 221
            T        R + L  R++ EEL
Sbjct: 263 PTPAEAFPAWRQREL-ERMSPEEL 285


>gi|148545397|ref|YP_001265499.1| DNA polymerase I [Pseudomonas putida F1]
 gi|148509455|gb|ABQ76315.1| DNA polymerase I [Pseudomonas putida F1]
          Length = 915

 Score = 37.5 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 38/154 (24%)

Query: 4   KNKMRKI---VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             K+R+     FD ETTGLD++  +++ +                  + P+     P A 
Sbjct: 327 LEKLRQAPLFAFDTETTGLDAQQAQLVGL---------------SFAVEPHEAAYVPLA- 370

Query: 61  KLHGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                     +  P      ++         +     +  NAK+D+  +       N  P
Sbjct: 371 -------HDYEGAPVQLDREAVLLALKPLLEDPAKAKVGQNAKYDINIL------ANGSP 417

Query: 118 LDPSRII--DTLSIARRKHPSS-RNDLNSLCKRY 148
               R +  DT+  +   + ++ R+D++SL ++Y
Sbjct: 418 PIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKY 451


>gi|313496494|gb|ADR57860.1| PolA [Pseudomonas putida BIRD-1]
          Length = 915

 Score = 37.5 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 38/154 (24%)

Query: 4   KNKMRKI---VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             K+R+     FD ETTGLD++  +++ +                  + P+     P A 
Sbjct: 327 LEKLRQAPLFAFDTETTGLDAQQAQLVGL---------------SFAVEPHEAAYVPLA- 370

Query: 61  KLHGITDEFLKDKPS---FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                     +  P+     ++         +     +  NAK+D+  +       N  P
Sbjct: 371 -------HDYEGAPAQLDREAVLLALKPLLEDPAKAKVGQNAKYDINIL------ANGSP 417

Query: 118 LDPSRII--DTLSIARRKHPSS-RNDLNSLCKRY 148
               R +  DT+  +   + ++ R+D++SL ++Y
Sbjct: 418 AIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKY 451


>gi|307204783|gb|EFN83341.1| Oligoribonuclease, mitochondrial [Harpegnathos saltator]
          Length = 168

 Score = 37.5 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 44/159 (27%), Gaps = 22/159 (13%)

Query: 17  TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH-------GITDEF 69
           TGLD +N+ I+EI  +   +   +   +   +     +                G+    
Sbjct: 2   TGLDVENNHILEIACLITDENLISVDDYLNLIIYQPNEILENMTDWCKVQHKKSGLITAC 61

Query: 70  LKDKPSFSSI----FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
              K +                + +      ++   D  F+   +  +N         + 
Sbjct: 62  QSSKITLKEAEEIMLKYLKKHISYKVCPLAGNSIHTDYMFLRKYMPLVNDYLHYRIIDVS 121

Query: 126 TLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           T+    RR HP+           Y         H A+ D
Sbjct: 122 TIRELTRRWHPNM----------YKAAPKKEYNHRAVDD 150


>gi|218199157|gb|EEC81584.1| hypothetical protein OsI_25049 [Oryza sativa Indica Group]
          Length = 363

 Score = 37.5 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--------- 174
            D   +AR      R  L  +  + G+  +    H A  DS L S ++++M         
Sbjct: 283 YDVGKMARHCPGDMRGGLERVAGKLGVRRAVGEAHQAGSDSLLTSQMFMRMRERYFDDQD 342

Query: 175 -MVGGSQINFGF 185
            +   + INFG+
Sbjct: 343 ALTAVAGINFGY 354


>gi|71401839|ref|XP_803904.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70866569|gb|EAN82053.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 207

 Score = 37.5 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 11/109 (10%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND---------LNSLCKRYGITI 152
           DV  I   L+    +        DT    R  H               L  L +   I  
Sbjct: 10  DVSLIKWTLEAHGLELPTALVFGDTFHFIRDAHRRRPVTPDKHPPSWALADLVQWLKIPP 69

Query: 153 SHRSKHGALLDSHLLSD-VYIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200
           +    H A  D+ +  D +Y  +   G +     +    RFF EE + V
Sbjct: 70  TL-PAHRAGNDAKMTWDALYHTLERYGDEDLTPREQLVSRFFDEEAREV 117


>gi|323455429|gb|EGB11297.1| hypothetical protein AURANDRAFT_14382 [Aureococcus anophagefferens]
          Length = 169

 Score = 37.5 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 14/100 (14%)

Query: 84  WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLN 142
                +     + H+ + D   +N          + P ++IDT  +  R  P  R   L 
Sbjct: 61  LRRLVDAGCVLVGHSLQSDFRVMN--------VAVPPDQVIDTAQLFSR--PGERKISLR 110

Query: 143 SLCKRYGITISHRSKHGALLDSHL---LSDVYIKMMVGGS 179
            LC      +     H ++ D+     L  +Y K+   G+
Sbjct: 111 FLCSYLLDHVIQDDNHDSVEDARAALRLYRLYQKLKAEGT 150


>gi|317014105|gb|ADU81541.1| hypothetical protein HPGAM_03535 [Helicobacter pylori Gambia94/24]
          Length = 270

 Score = 37.5 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 40/131 (30%), Gaps = 25/131 (19%)

Query: 24  DRIIEIGAVELLDYS---KTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80
             II I AV   DY    K     Q      G                      S   + 
Sbjct: 52  HEIISIAAVIGDDYGQFVKVGNFGQKHENKEG---------FT-----------SEKELL 91

Query: 81  SEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN 139
            +F+ +FNE+    I+ N + FD+  +  +  + N          +     R ++    +
Sbjct: 92  EDFFKYFNEKQPRLISFNGRGFDMPLLTLKALKYNLTLDAFYSQENKWENYRARYSEQFH 151

Query: 140 -DLNSLCKRYG 149
            DL      YG
Sbjct: 152 LDLMDSLSHYG 162


>gi|154300680|ref|XP_001550755.1| hypothetical protein BC1G_10928 [Botryotinia fuckeliana B05.10]
 gi|150856535|gb|EDN31727.1| hypothetical protein BC1G_10928 [Botryotinia fuckeliana B05.10]
          Length = 3936

 Score = 37.5 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 32/191 (16%)

Query: 56   SPEALKLHGITDEFLKD------------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
               AL ++ IT E + +              + + I    +   N+   + +  N  FD+
Sbjct: 3144 EAGALYVNHITFELVSEIDISKLSQTWKSCATANEILRTCFCQINDDILQVVLKNESFDM 3203

Query: 104  GFINAELQRI-NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
             +      +       D  + + +L I +    +    LN   +    +I   S H AL 
Sbjct: 3204 PWAEHIYSKSSKYCTPDKMQDLISLDIMQNIENTPPIRLNIFTEGSSKSILLISMHHALY 3263

Query: 163  DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222
            D+  L+ +   +++       G  T E        K V                +++EL 
Sbjct: 3264 DAESLAVLMQDILMRYQ----GIPTPERPSAGALVKYV---------------ASQDELA 3304

Query: 223  EHDKTIQTLGK 233
              +  ++ LG 
Sbjct: 3305 AKNFWVKKLGD 3315


>gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
 gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
          Length = 923

 Score = 37.5 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    +I+ +                  + P      P A        +  
Sbjct: 349 AFDTETTSLDPMRAQIVGL---------------SFSVEPGHAAYVPVA----HRGPDMP 389

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              PS   + ++   +  +   + +  + K+D   +      +N          DTL  +
Sbjct: 390 AQLPS-DEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE------HDTLLES 442

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 443 YVLESHRTHDMDSLALRHLGV 463


>gi|294948469|ref|XP_002785766.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239899814|gb|EER17562.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 587

 Score = 37.5 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 42/142 (29%)

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           + +++K  F  ++              I HN   D+ ++  E  +     L   +     
Sbjct: 230 DLVREKLGFRRVWKAILQA----KKPIILHNGMLDLMWMMQEFDQDLPSELANFK----- 280

Query: 128 SIARRKHPSSRND--------------LNSLCKRYGITISHRSKHGAL------------ 161
           + AR+  PS   D              L+ L +R+      +  HGA             
Sbjct: 281 ARARQLFPSGVYDTRQIAIESGFHGVGLSQLAERFAQDPVVQKIHGADEFSRKFDGEDGE 340

Query: 162 -------LDSHLLSDVYIKMMV 176
                   D+     V+  +  
Sbjct: 341 EKFHEAGYDAVATGKVFAALTA 362


>gi|167031159|ref|YP_001666390.1| DNA polymerase I [Pseudomonas putida GB-1]
 gi|166857647|gb|ABY96054.1| DNA polymerase I [Pseudomonas putida GB-1]
          Length = 915

 Score = 37.5 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 38/154 (24%)

Query: 4   KNKMRKI---VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
            +K+R+     FD ETTGLD++  +++ +                  + P+     P A 
Sbjct: 327 LDKLRQAPLFAFDTETTGLDAQKAQLVGL---------------SFAVAPHEAAYVPLA- 370

Query: 61  KLHGITDEFLKDKPS---FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                     +  P+     ++         +     +  NAK+D+  +       N  P
Sbjct: 371 -------HDYEGAPAQLDRDAVLLALKPLLEDPAKAKVGQNAKYDINIL------ANGSP 417

Query: 118 LDPSRII--DTLSIARRKHPSS-RNDLNSLCKRY 148
               R +  DT+  +   + ++ R+D++SL ++Y
Sbjct: 418 AIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKY 451


>gi|125599257|gb|EAZ38833.1| hypothetical protein OsJ_23247 [Oryza sativa Japonica Group]
          Length = 354

 Score = 37.5 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--------- 174
            D   +AR      R  L  +  + G+  +    H A  DS L S ++++M         
Sbjct: 274 YDVGKMARHCPGDMRGGLERVAGKLGVRRAVGEAHQAGSDSLLTSQMFMRMRERYFDDQD 333

Query: 175 -MVGGSQINFGF 185
            +   + INFG+
Sbjct: 334 ALTAVAGINFGY 345


>gi|154175515|ref|YP_001408840.1| DNA polymerase I [Campylobacter curvus 525.92]
 gi|112803673|gb|EAU01017.1| DNA polymerase I superfamily [Campylobacter curvus 525.92]
          Length = 879

 Score = 37.5 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 32/142 (22%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            I FD ETT +D+++ +++        + +        +L                    
Sbjct: 318 IIAFDTETTDIDTQSAKLVGFSFCFNDENAYYVPVAHSYL-------------------- 357

Query: 69  FLKDKPSFSSIFSEFWDFFNEQ--NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                P    + ++F  +   Q      +  N K+D   +    + +  +P  P +  DT
Sbjct: 358 ---GAP--KQVGTDFAAWAVGQIYKGCVVGQNLKYDFKVVK---RNLGLEP--PVKFKDT 407

Query: 127 LSIARRKHPSSRNDLNSLCKRY 148
           + +A    PS    +++L KR 
Sbjct: 408 MVLAWLADPSQAVGMDALAKRL 429


>gi|19115423|ref|NP_594511.1| conserved fungal protein [Schizosaccharomyces pombe 972h-]
 gi|74675943|sp|O14041|YEY8_SCHPO RecName: Full=Uncharacterized nucleoloar protein C2C4.08
 gi|2414619|emb|CAB16368.1| conserved fungal protein [Schizosaccharomyces pombe]
          Length = 243

 Score = 37.5 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 57/186 (30%), Gaps = 23/186 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-----NGRKNSPEALKLH 63
            +V D E    + K   I E G    ++           +       NGR    EA    
Sbjct: 70  FLVIDFEAYEFNQKI--ITEAGITMRINGE--WDYHHYRIKNFLHLRNGRFVPDEADNF- 124

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
              D  +  K +F SI  +        N   + H  + ++         +         +
Sbjct: 125 QFGDSKIVTKIAFISILKKILK---TPNLHLVGHGVENEIK----YANVLGIPIPKDVTV 177

Query: 124 IDTLS-----IARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVG 177
           +DT +      +      S ++  SL K    + I     H A  D+   S+   +M   
Sbjct: 178 LDTQNVFSFFQSLFLKEISNSNNISLAKMLTHLNIRAFCLHNAGNDARYTSEALREMTNK 237

Query: 178 GSQINF 183
            +  NF
Sbjct: 238 FTLSNF 243


>gi|50509734|dbj|BAD31786.1| putative CCR4-NOT transcription complex,subunit 7 [Oryza sativa
           Japonica Group]
          Length = 369

 Score = 37.5 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--------- 174
            D   +AR      R  L  +  + G+  +    H A  DS L S ++++M         
Sbjct: 289 YDVGKMARHCPGDMRGGLERVAGKLGVRRAVGEAHQAGSDSLLTSQMFMRMRERYFDDQD 348

Query: 175 -MVGGSQINFGF 185
            +   + INFG+
Sbjct: 349 ALTAVAGINFGY 360


>gi|296112880|ref|YP_003626818.1| oligoribonuclease [Moraxella catarrhalis RH4]
 gi|295920574|gb|ADG60925.1| oligoribonuclease [Moraxella catarrhalis RH4]
 gi|326561112|gb|EGE11477.1| oligoribonuclease [Moraxella catarrhalis 7169]
 gi|326564455|gb|EGE14682.1| oligoribonuclease [Moraxella catarrhalis 103P14B1]
 gi|326564568|gb|EGE14793.1| oligoribonuclease [Moraxella catarrhalis 12P80B1]
 gi|326564778|gb|EGE14990.1| oligoribonuclease [Moraxella catarrhalis 46P47B1]
 gi|326567572|gb|EGE17687.1| oligoribonuclease [Moraxella catarrhalis BC1]
 gi|326569420|gb|EGE19480.1| oligoribonuclease [Moraxella catarrhalis BC8]
 gi|326571382|gb|EGE21397.1| oligoribonuclease [Moraxella catarrhalis BC7]
 gi|326575336|gb|EGE25264.1| oligoribonuclease [Moraxella catarrhalis CO72]
 gi|326576579|gb|EGE26486.1| oligoribonuclease [Moraxella catarrhalis 101P30B1]
 gi|326577403|gb|EGE27287.1| oligoribonuclease [Moraxella catarrhalis O35E]
          Length = 195

 Score = 37.1 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT 40
           D+E TGLD++ D IIEI  +   D    
Sbjct: 23 IDLEMTGLDTQQDDIIEIATIVTDDELNI 51


>gi|124003002|ref|ZP_01687853.1| hypothetical protein M23134_07468 [Microscilla marina ATCC 23134]
 gi|123991652|gb|EAY31060.1| hypothetical protein M23134_07468 [Microscilla marina ATCC 23134]
          Length = 246

 Score = 37.1 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 33/128 (25%)

Query: 80  FSEFWDFFNEQ---NAEWIAHN-AKFDVGFINAELQRIN----------KDPLDPSRIID 125
             +F    + +   N    AHN  +FD  ++   +                       +D
Sbjct: 104 LEDFKALIDTKFTDNLVMCAHNGKEFDYPYLCRRMVIHGVELPLTLNLLHKKPWEIPHLD 163

Query: 126 TLSIARRKHPSSRNDLNSLCKRYGIT-ISHR--------SKH----------GALLDSHL 166
           TL + +      +  L+ L     I  + +R          H          G + D  +
Sbjct: 164 TLEMWKFGDRKHKTSLSLLATLMDIPEVENRLEGQDINKVYHETQDMKQITQGCMRDIEI 223

Query: 167 LSDVYIKM 174
           L+ +++K+
Sbjct: 224 LAKLFLKL 231


>gi|313901635|ref|ZP_07835071.1| hypothetical protein ThesuDRAFT_2203 [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468097|gb|EFR63575.1| hypothetical protein ThesuDRAFT_2203 [Thermaerobacter subterraneus
           DSM 13965]
          Length = 566

 Score = 37.1 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 89  EQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSIARRKH--PSSRNDLNSLC 145
           E+    +  N + FD   +    Q   +         D L  ARR    P SR +L +L 
Sbjct: 291 EERPWLVTFNGRGFDWPMLETRWQWHRRPAPPLKAHFDLLYPARRLWAGPGSRVNLRALE 350

Query: 146 KRY 148
            R 
Sbjct: 351 HRL 353


>gi|239997082|ref|ZP_04717606.1| oligoribonuclease [Alteromonas macleodii ATCC 27126]
          Length = 181

 Score = 37.1 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 54/175 (30%), Gaps = 25/175 (14%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKN 55
           + K+    +  D+E TGLD +   ++EI  +        L         Q          
Sbjct: 1   MSKHDSNLVWIDMEMTGLDPETCVVMEIATIVTDAQLNILAEGPVIAVHQS--DDVLNNM 58

Query: 56  SPEALKLH---GITDEFLKDKPSFSSIFSE---FWD-FFNEQNAEWIAHNAKFDVGFINA 108
                ++H   G+T    + K S     ++   F + + +   +    +    D  F+  
Sbjct: 59  DEWCTRVHGESGLTARCRESKISVEEASAQTIAFLEQWVDAGKSPLCGNTIGQDRRFMVK 118

Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +  +  +     R ID  +I           L+            +  H AL D
Sbjct: 119 YMPEL--EAYFHYRNIDVSTIKELTRRWKPEILD--------GFEKKGVHLALDD 163


>gi|39969095|ref|XP_365938.1| hypothetical protein MGG_10158 [Magnaporthe oryzae 70-15]
 gi|145021284|gb|EDK05413.1| hypothetical protein MGG_10158 [Magnaporthe oryzae 70-15]
          Length = 570

 Score = 37.1 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 4/97 (4%)

Query: 88  NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCK 146
            +     + H+   DV  +        K P +   ++DT  + +     S    L+ + +
Sbjct: 469 RDACVVLVGHDIMADVEHLEKVNYDARKVP-EIFDVVDTAHMFQHWRRESNATKLSRVLE 527

Query: 147 RYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
              + I HR  H A  D+       + M     Q +F
Sbjct: 528 --SLEIRHRYLHNAGNDATYTLQAMLAMAQVTRQESF 562


>gi|435164|emb|CAA53760.1| DNA polymerase I [Rhizobium leguminosarum]
          Length = 158

 Score = 37.1 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 53/154 (34%), Gaps = 32/154 (20%)

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
           ++               +++   +A N K+D   +    +R   +        DT+ I+ 
Sbjct: 4   NQIPMRDALPRLKALLEDESVLKVAQNLKYDYLLL----KRYGIETRSFD---DTMLISY 56

Query: 132 RKHPSS-RNDLNSLCKRY-----------------GITIS----HRSKHGALLDSHLLSD 169
              P+  R+ ++ L +++                  +T       R+ H A  D+ +   
Sbjct: 57  VLEPAPARHGMDPLSEKFLGHTPIPYKDVAGSGKANVTFDLVDIDRATHYAAEDADVTLR 116

Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNI 203
           +++ +  G ++   G  +  +R  +     +  +
Sbjct: 117 LWLVLKPGCAR---GLTSVYERLERPLLPVLARM 147


>gi|324014286|gb|EGB83505.1| hypothetical protein HMPREF9533_01625 [Escherichia coli MS 60-1]
          Length = 190

 Score = 37.1 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 65/201 (32%), Gaps = 50/201 (24%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC----------PNGRKN 55
           M  ++ D+ET G + K+  I+ IGA+    +     + F   +           P+G   
Sbjct: 1   MNNLMIDLETMGKN-KDAPIVSIGALFFTPETGYIGQEFYTVVSLESAMGQGATPDGDTI 59

Query: 56  ------SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVG 104
                 SPEA     I D       S S   SE   F N   A     +   + A FD  
Sbjct: 60  LWWLKQSPEARAAICIDDTL-----SISDALSELNHFINRHAANTKYLKVWGNGATFDNV 114

Query: 105 FINAELQRIN-KDPLDPSRIID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            +    +R     P       D     TL  +    P           +  +      +H
Sbjct: 115 ILRGAYERAGQICPWAYWNDHDVRTIVTLGRSIGFDP-----------KMDMPFDGE-RH 162

Query: 159 GALLDSHLLSD----VYIKMM 175
            AL D+   +     ++ K++
Sbjct: 163 NALADARHQAKYVSAIWQKLI 183


>gi|149234760|ref|XP_001523259.1| hypothetical protein LELG_05485 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146453048|gb|EDK47304.1| hypothetical protein LELG_05485 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 500

 Score = 37.1 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 43/139 (30%), Gaps = 11/139 (7%)

Query: 93  EWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152
             + H+   DV ++    + +          +DT  + + +H      L    +   I  
Sbjct: 279 YLVGHDVGGDVKWL----KNLGISLPQNHLRLDTAQMMKIQHGKDNVGLARSLQLLDIP- 333

Query: 153 SHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212
            H   H A  D++    +  K+     ++              E+      +  +R +  
Sbjct: 334 -HNFLHNAGNDAYYTLLLAFKLCDPYIRLLKRLDVALVEELSPEEIEDKKKAAKERREAK 392

Query: 213 FTRITKEELDEHDKTIQTL 231
            +R        H + ++ +
Sbjct: 393 ESR-----RQLHKEQVEKV 406


>gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17]
 gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17]
          Length = 920

 Score = 37.1 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 55/152 (36%), Gaps = 37/152 (24%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           + +  D ETT  ++    ++ +  AVE        + F V + P  R+ + + + +    
Sbjct: 348 KILSLDTETTSTNAIEAELVGLSFAVEER------KAFYVVI-PANREEALKIVAI---- 396

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                 KP +     E            +  N K+D+  +      +         + DT
Sbjct: 397 -----FKPLYED--PEILK---------VGQNIKYDIEVLRHYGVEVAGP------MFDT 434

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
           +       P  R++++ + + Y   + +R+ H
Sbjct: 435 MIAHYLLQPELRHNMDYMAEVY---LGYRTVH 463


>gi|262043420|ref|ZP_06016545.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039246|gb|EEW40392.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 362

 Score = 37.1 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 77  SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS 136
             I S       + +     HN+ FD   +   +  +        R  DT+  A     S
Sbjct: 52  EPIPSRLRKAIADPDTLLYFHNSHFDRTVLRHAMPEL---APPVERWRDTMVQA--LAHS 106

Query: 137 SRNDLNSLCKRYGIT 151
               L +LC+  G+ 
Sbjct: 107 LPGALAALCEVLGVP 121


>gi|50292093|ref|XP_448479.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527791|emb|CAG61440.1| unnamed protein product [Candida glabrata]
          Length = 493

 Score = 37.1 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 17/97 (17%)

Query: 93  EWIAHNAKFDVGFINA---ELQRINK------------DPLDPSRIIDTLSIARRKHPSS 137
            ++ HN K D+ ++     + + I +            D  +P  ++DT  +    +   
Sbjct: 308 AFVGHNIKGDIKWLKDIGVDFRDIGEPAGELRPYKEEADKNEPVYLLDTEKLYCANYGRK 367

Query: 138 RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            ++L  + +   I   H   H A  D+H   ++  +M
Sbjct: 368 GSNLGRILQLLEIP--HAFLHNAGNDAHYTLELLKRM 402


>gi|34557031|ref|NP_906846.1| hypothetical protein WS0615 [Wolinella succinogenes DSM 1740]
 gi|34482746|emb|CAE09746.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 263

 Score = 37.1 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 31/137 (22%)

Query: 24  DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83
            +I+ I AV   DY +       F+   G                    + S   I   F
Sbjct: 51  HKIVSIAAVIADDYGR-------FIKVGGF-----------------AQEGSEKEILGAF 86

Query: 84  WDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIID-TLSIARRKHPSSRNDL 141
            D+ N +  + ++ N + FD+  +     + N          +  L+  + ++   R   
Sbjct: 87  LDYLNAKQPKLVSFNGRGFDLPMLLLRAMKYNLSAYAYFESDNPALNKNKWENYRQRYS- 145

Query: 142 NSLCKRYGITISHRSKH 158
               +R+ + +     H
Sbjct: 146 ----ERFHVDLYDTLGH 158


>gi|326425081|ref|YP_004286304.1| DNA polymerase I [Tsukamurella phage TPA2]
 gi|323145733|gb|ADX31977.1| DNA polymerase I [Tsukamurella phage TPA2]
          Length = 625

 Score = 37.1 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 73/231 (31%), Gaps = 72/231 (31%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  DIET GL  + D      A    D     R   V L P+           H   DE 
Sbjct: 37  VATDIETPGLLRQFDINCVTAAWRHGDG----RVHSVLLDPDRTP--------HH--DEA 82

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-------ELQRINKDPLDPSR 122
           +++                +     I  N  FD+  +         +++    D L P+R
Sbjct: 83  VRE--------------IYDSAEVIILQNGVFDLPALLHSGLITPEQIREKFLDTLLPAR 128

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY--------GITISHRSKH---------------- 158
           +IDT S   R        L  L KR+        GI ++ ++                  
Sbjct: 129 MIDTSSPMAR-------SLTMLVKRHLGVEELTGGIELAFKAAGYKRQQDGYEGMDIDSP 181

Query: 159 ----GALLDSHLLSDVYIKMMVGG--SQINFGFKTNEDRFFKEEKKTVPNI 203
               GA+ D+ +   ++  +       Q++  F++       E +  V  +
Sbjct: 182 IYRLGAMADTVMTLALWPVLYEAAIDQQLDHPFQSRGCVDRAEAQYVVERM 232


>gi|94986376|ref|YP_605740.1| phage integrase [Deinococcus geothermalis DSM 11300]
 gi|94556657|gb|ABF46571.1| phage integrase [Deinococcus geothermalis DSM 11300]
          Length = 310

 Score = 37.1 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 10/58 (17%)

Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
            +  +    +R   D L   R  DTL          R  L +LC R G++   R+ HG
Sbjct: 211 VLRALREARERSGGDFLLRWRDPDTL----------RGKLKALCARAGVSYEGRAFHG 258


>gi|213646671|ref|ZP_03376724.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 53

 Score = 37.1 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             + L       G+ +  +  H AL D  +   +   +  GG++
Sbjct: 11  KWHKLVDAAAHEGVVVEGK-AHRALADCKMTLGLVRALAKGGAK 53


>gi|297289197|ref|XP_002803487.1| PREDICTED: calcium-dependent secretion activator 2-like [Macaca
           mulatta]
          Length = 1301

 Score = 37.1 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 21/140 (15%)

Query: 20  DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL--KDKPSFS 77
           D + DRI+ + A+    Y  T ++++       +K +P+   LH  TD  L  KD   F 
Sbjct: 574 DDEQDRILWVQAM----YRATGQSYKPVPAIQTQKLNPKGGTLH--TDAQLSGKDADRFQ 627

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS 137
               +  +F +    +        D  F+   LQR   D     R+ D+ S      P  
Sbjct: 628 KHGMD--EFISANPCKL-------DHAFLFRILQRQTLD----HRLNDSYSCLGWFSPGQ 674

Query: 138 RNDLNSLCKRYGITISHRSK 157
              L+  C RYG+   HR  
Sbjct: 675 VFVLDEYCARYGVRGCHRHL 694


>gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001]
 gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001]
          Length = 913

 Score = 37.1 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 45/140 (32%), Gaps = 27/140 (19%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETT LD    +I+ +       ++        ++ P   +     ++L         
Sbjct: 340 FDTETTSLDPMTAQIVGLSFAVEAGHA-------AYV-PVAHRGPDAPVQL--------- 382

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                  + ++   +      + +  + K+D   +       N          DTL  + 
Sbjct: 383 ---PRDEVLAKLKPWLESAKHKKVGQHLKYDEQVL------ANYGIEMRGIEHDTLLQSY 433

Query: 132 RKHPSSRNDLNSLC-KRYGI 150
                  +D+++L  +  G+
Sbjct: 434 VLESHRPHDMDNLALRHLGV 453


>gi|192288480|ref|YP_001989085.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1]
 gi|192282229|gb|ACE98609.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1]
          Length = 204

 Score = 37.1 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 43/164 (26%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET GL    DR   +  V+L +   +    Q             A          
Sbjct: 20  VAIDTETMGLHPHRDR---LCVVQLSNGDGSADVVQ---------IPQGAT--------- 58

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
             D P+             +     I H A+FD+  +           + P  +  T   
Sbjct: 59  --DAPNLK-------KLLGDPAVVKIFHFARFDLAALYKAF------GVMPQPVYCTKIA 103

Query: 130 ARRKHP-SSRNDLNSLCKR-YGITISHRSK-----HGALLDSHL 166
           +R     + R+ L  L +   GI +S + +       +L D+ L
Sbjct: 104 SRLTRTYTDRHGLKDLVRELLGIDLSKQQQSSDWGADSLSDAQL 147


>gi|70950938|ref|XP_744749.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56524832|emb|CAH77851.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 806

 Score = 37.1 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D E          + ++  V+          +  ++ P+ +  +   L   GI +  LK
Sbjct: 375 IDCEMCETSGGQRELTKVTVVDAYMNIV----YDSYVMPDNKITNYLTLYS-GINENTLK 429

Query: 72  D-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-LSI 129
                 S + +E  + FN + +  + H+ + D+  +           +    IIDT +  
Sbjct: 430 GVNTKLSDVQAELKNIFNNK-SILVGHSLENDLHALK----------IKHDYIIDTSVIY 478

Query: 130 ARRKHPSSRNDLNSLCK-RYGITISHRSKHGALLDSHLLSDVYIKM 174
           +   +   +  L +L K    IT++  + H ++ D+ +   +++ +
Sbjct: 479 SNNIYNFLKPSLFNLSKKHLSITMARENGHNSIDDARI--SMFLAL 522


>gi|260220475|emb|CBA28049.1| hypothetical protein Csp_A05340 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 173

 Score = 37.1 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 21/161 (13%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGITDE 68
           V DIE +GL  ++   IE+G V    +      +   + P          A  LH IT E
Sbjct: 18  VLDIEASGL-GRSSYPIEVGYVLPDGH-----AYCTLVQPEQDWTHWDDSAAALHRITRE 71

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN--AKFDVGFINAELQRINKDPLDPSRIIDT 126
            L+++        E     N Q A    ++     D  ++N   +     P      + +
Sbjct: 72  LLQERGLR---AREVATLLNTQLAGQTVYSDGWANDFTWLNVLYEAAGMSPRFKLENLRS 128

Query: 127 LSIARRKHPSSRNDLNS-LCKRYGITISHRSKHGALLDSHL 166
           L     +     + + + +    G       +H A  D+ L
Sbjct: 129 LLS--DEEADQWHVVKAKIASERG-----TQRHRASSDARL 162


>gi|225620435|ref|YP_002721692.1| exonuclease [Brachyspira hyodysenteriae WA1]
 gi|225215254|gb|ACN83988.1| exonuclease [Brachyspira hyodysenteriae WA1]
          Length = 287

 Score = 37.1 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 36/105 (34%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  DIETTG+      +  IG  +        +  +VF+              HG  +
Sbjct: 88  KTVFLDIETTGIKPSKAHVTVIGCYD-------GKEMKVFV--------------HG-RN 125

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQ 111
           E             EF D+     +  +  N   FD+ F+     
Sbjct: 126 EH------------EFLDYIKNY-SIIVTFNGSCFDIPFLERYFA 157


>gi|145641462|ref|ZP_01797040.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
 gi|145273753|gb|EDK13621.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.4-21]
          Length = 59

 Score = 37.1 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 213 FTRITKEELDEHDKTIQTLGK----NAIWDRYISSN 244
             + T +EL  H + ++ L K    N +WD+   +N
Sbjct: 21  LLQPTNDELQAHLELLKMLNKKSGNNCLWDKRFGNN 56


>gi|323174420|gb|EFZ60045.1| endodeoxyribonuclease [Escherichia coli LT-68]
          Length = 186

 Score = 37.1 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 62/196 (31%), Gaps = 50/196 (25%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC----------PNGRKN----- 55
            D+ET G + K+  I+ IGAV    +     + F   +           P+G        
Sbjct: 2   IDLETMGKN-KDAPIVSIGAVFFTPETGDIGQEFYTVVSLDSAMEQGATPDGDTILWWLK 60

Query: 56  -SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAE 109
            SPEA     I D       S S   SE   F N      +  +   + A FD   +   
Sbjct: 61  QSPEARAAICIDDTL-----SISDALSELSHFINRHADNTKYLKVWGNGATFDNVILRGA 115

Query: 110 LQRIN-KDPLDPSRIID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            +R     P       D     TL  +    P           +  +      +H AL D
Sbjct: 116 YERAGQICPWAYWNDHDVRTIVTLGRSIGFDP-----------KMDMPFDGE-RHNALAD 163

Query: 164 SHLLSD----VYIKMM 175
           +   +     ++ K++
Sbjct: 164 ARHQAKYVSAIWQKLI 179


>gi|308179956|ref|YP_003924084.1| hypothetical protein LPST_C0770 [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308045447|gb|ADN97990.1| hypothetical protein LPST_C0770 [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 412

 Score = 37.1 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 58/212 (27%), Gaps = 21/212 (9%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL--HGITDEFLKDKPSFSSIF 80
              I ++ A+    +++T   F  +          +   L   G+T    + +    +I 
Sbjct: 160 RASIFQLSAIGFSHHTQTAPFFNRYFDDPNFLPDKKLAGLSATGLTTVAYEAQGDPLTIL 219

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--------PSRIIDTLSIARR 132
             F     +     +  +   D+  I   L +  +            P  I D  +    
Sbjct: 220 KAFIQQVIQPQLPLVFWDQTQDMKHIRLLLTQYYQQLTPTEQQLVSRPVTIFDAQAYTNT 279

Query: 133 KHPSSRND-------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                 +        LN L   + I+  H+  H A+ D      V +K+     Q     
Sbjct: 280 LINRGNHKVGSHDLPLNGLAALFNISNPHQ--HNAIWDVQTTELVMVKLAELTHQTP--V 335

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
            T               +  ++   P     +
Sbjct: 336 ITTPPAPIALPATVPAVVPSIQTPSPTPQHAS 367


>gi|242091898|ref|XP_002436439.1| hypothetical protein SORBIDRAFT_10g002640 [Sorghum bicolor]
 gi|241914662|gb|EER87806.1| hypothetical protein SORBIDRAFT_10g002640 [Sorghum bicolor]
          Length = 319

 Score = 37.1 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 138 RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           R  L  +    G+  +    H A  DS L +DV + M+
Sbjct: 262 RGGLEQVAAALGVERAAGHAHCAGSDSLLTTDVLLAML 299


>gi|39933126|ref|NP_945402.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009]
 gi|39652751|emb|CAE25490.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009]
          Length = 204

 Score = 37.1 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 43/164 (26%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET GL    DR   +  V+L +   +    Q             A          
Sbjct: 20  VAIDTETMGLHPHRDR---LCVVQLSNGDGSADVVQ---------IPQGAT--------- 58

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
             D P+             +     I H A+FD+  +           + P  +  T   
Sbjct: 59  --DAPNLK-------KLLGDPAVVKIFHFARFDLAALYKTF------GVMPQPVYCTKIA 103

Query: 130 ARRKHP-SSRNDLNSLCKR-YGITISHRSK-----HGALLDSHL 166
           +R     + R+ L  L +   GI +S + +       +L D+ L
Sbjct: 104 SRLTRTYTDRHGLKDLVRELLGIDLSKQQQSSDWGADSLSDAQL 147


>gi|109067997|ref|XP_001084178.1| PREDICTED: calcium-dependent secretion activator 2-like isoform 5
           [Macaca mulatta]
          Length = 1297

 Score = 37.1 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 21/140 (15%)

Query: 20  DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL--KDKPSFS 77
           D + DRI+ + A+    Y  T ++++       +K +P+   LH  TD  L  KD   F 
Sbjct: 574 DDEQDRILWVQAM----YRATGQSYKPVPAIQTQKLNPKGGTLH--TDAQLSGKDADRFQ 627

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS 137
               +  +F +    +        D  F+   LQR   D     R+ D+ S      P  
Sbjct: 628 KHGMD--EFISANPCKL-------DHAFLFRILQRQTLD----HRLNDSYSCLGWFSPGQ 674

Query: 138 RNDLNSLCKRYGITISHRSK 157
              L+  C RYG+   HR  
Sbjct: 675 VFVLDEYCARYGVRGCHRHL 694


>gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
 gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
          Length = 920

 Score = 37.1 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 44/141 (31%), Gaps = 32/141 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  D ETT  +     ++ +                  + P      P   K H    
Sbjct: 348 KILSLDTETTSTNPMEAELVGL---------------SFAVEPKKAFYVPVPAK-H---- 387

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
              +D  +   IF   ++    +    +  N K+D+  +      +         + DT+
Sbjct: 388 ---EDAVNLVKIFKPLYE---NEEIVKVGQNIKYDMEVLRNYGIELKGP------MFDTM 435

Query: 128 SIARRKHPSSRNDLNSLCKRY 148
                  P  R++++ + + Y
Sbjct: 436 IAHYVLQPELRHNMDYMAEVY 456


>gi|254555963|ref|YP_003062380.1| hypothetical protein JDM1_0796 [Lactobacillus plantarum JDM1]
 gi|254044890|gb|ACT61683.1| conserved hypothetical protein [Lactobacillus plantarum JDM1]
          Length = 412

 Score = 37.1 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 58/212 (27%), Gaps = 21/212 (9%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL--HGITDEFLKDKPSFSSIF 80
              I ++ A+    +++T   F  +          +   L   G+T    + +    +I 
Sbjct: 160 RASIFQLSAIGFSHHTQTAPFFNRYFDDPNFLPDKKLAGLSATGLTTVAYEAQGDPLTIL 219

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--------PSRIIDTLSIARR 132
             F     +     +  +   D+  I   L +  +            P  I D  +    
Sbjct: 220 KAFIQQVIQPQLPLVFWDQTQDMKHIRLLLTQYYQQLTPTEQQLVSRPVTIFDAQAYTNT 279

Query: 133 KHPSSRND-------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                 +        LN L   + I+  H+  H A+ D      V +K+     Q     
Sbjct: 280 LINRGNHKVGSHDLPLNGLAALFNISNPHQ--HNAIWDVQTTELVMVKLAELTHQTP--V 335

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
            T               +  ++   P     +
Sbjct: 336 ITTPPAPIALPATVPAVVPSIQTPSPTPQHAS 367


>gi|209972970|ref|YP_002300417.1| gp31 [Bacillus phage SPO1]
 gi|209871290|gb|ACI91046.1| gp31 [Bacillus phage SPO1]
          Length = 925

 Score = 37.1 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 39/168 (23%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD-- 67
           +V D+ET   +           +E +   KT  T + +         P+ + + G++D  
Sbjct: 209 VVIDLETVKTNPF---------IEKVTMKKT--TLEAY----PMSQQPKIVGI-GLSDRS 252

Query: 68  -----------EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116
                      E L       +I          ++ E+IAHN KFD+ ++     R + D
Sbjct: 253 GYGCAIPLYHRENLMPGNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWL-----RASLD 307

Query: 117 PLDPSRIIDTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALL 162
               + I DT+ I        +  + L  L     +         AL 
Sbjct: 308 IYLDTLIWDTMLIHYLCITEEKGTHGLKDLA---WLETDMGGYDDALD 352


>gi|254281582|ref|ZP_04956550.1| oligoribonuclease [gamma proteobacterium NOR51-B]
 gi|219677785|gb|EED34134.1| oligoribonuclease [gamma proteobacterium NOR51-B]
          Length = 180

 Score = 37.1 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 15/135 (11%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIG------AVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
           +   I  D+E TGL  +  R+IEI       A+  L         Q        K     
Sbjct: 4   EQNLIWVDLEMTGLVPEEHRVIEIATIVTDSALNELAQGPVLAIHQS--DAELSKMDEWN 61

Query: 60  LKLH---GITD----EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           +  H   G+ D      L +  + S   +   ++ +   +    ++   D  F+   +  
Sbjct: 62  VNTHTGSGLVDRVKSSGLDEGAAVSETLAFLKEWVSAGASPMCGNSICQDRRFMARHMPE 121

Query: 113 INKDPLDPSRIIDTL 127
           +       +  + TL
Sbjct: 122 LEAYFHYRNLDVSTL 136


>gi|117919043|ref|YP_868235.1| oligoribonuclease [Shewanella sp. ANA-3]
 gi|166216589|sp|A0KSR0|ORN_SHESA RecName: Full=Oligoribonuclease
 gi|117611375|gb|ABK46829.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. ANA-3]
          Length = 181

 Score = 37.1 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 15/136 (11%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLH-- 63
            D+E TGL+   DR+IEI  +        +         Q               K H  
Sbjct: 11  IDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQS--DDVLAAMDDWNQKHHGE 68

Query: 64  -GITDEFLKDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRINKDPL 118
            G+ D     + + +   ++   F  +      +    ++   D  F+N  ++ +     
Sbjct: 69  SGLIDRVRASQMNEAQAVAQTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELEDYFH 128

Query: 119 DPSRIIDTLSIARRKH 134
             +  + T+    ++ 
Sbjct: 129 YRNLDVSTVKELVKRW 144


>gi|260432091|ref|ZP_05786062.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415919|gb|EEX09178.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
          Length = 933

 Score = 37.1 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 45/156 (28%), Gaps = 36/156 (23%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + ++   +  D ETTGL+     ++ I                  + P      P    L
Sbjct: 341 QAHERGWLAVDTETTGLNEMVADLVGISLC---------------IEPGEACYIP----L 381

Query: 63  HGI---------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
                       +D   + +               + +   I  N K+D         R 
Sbjct: 382 THRDGASDDLFGSDALAEGQMPLDEALKLLKPVLEDPSILKIGQNMKYDAKI----FARY 437

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRY 148
             D        DT+ ++   H     + +++L +RY
Sbjct: 438 GVDVAPID---DTMLMSYAMHAGEHGHGMDTLSERY 470


>gi|110293351|gb|ABG66307.1| CCR4 associated factor 1-related protein [Capsicum annuum]
          Length = 266

 Score = 37.1 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 18/135 (13%)

Query: 57  PEALKL---HGI---TDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
           P++++L    GI   T+  +  D   F+ +          ++  W+  ++ +D G++   
Sbjct: 110 PDSIELLRRQGIDFETNREVGIDSARFAEVMMS-SGLVCNESVSWVTFHSAYDFGYLVKV 168

Query: 110 LQR----------INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
           L R          +    +     +  +    R   S    L+ + K   +  +    H 
Sbjct: 169 LTRRELPGRLEDFLEILRVFFGNKVYDMKHMMRFCNSLYGGLDRVAKTLSVDRAVGKCHQ 228

Query: 160 ALLDSHLLSDVYIKM 174
           A  DS L    + KM
Sbjct: 229 AGSDSLLTWHAFQKM 243


>gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13]
 gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13]
          Length = 925

 Score = 37.1 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 40/138 (28%), Gaps = 32/138 (23%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET G+D     ++ +      +        + +  P    +   A           
Sbjct: 355 AFDTETDGIDPLKAGLVGMSFAVKEN--------EAWYVPVPANSVEAA----------- 395

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                   +   F        +  I  N KFD+  +     ++           DT+   
Sbjct: 396 -------KVVERFSPALQNPKSLKIGQNIKFDILVLRKYNVKVAGPLF------DTMIAH 442

Query: 131 RRKHPSSRNDLNSLCKRY 148
              +P  R+ ++ L + Y
Sbjct: 443 YLLNPELRHGMDYLAETY 460


>gi|300767765|ref|ZP_07077675.1| conserved hypothetical protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300494750|gb|EFK29908.1| conserved hypothetical protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 410

 Score = 37.1 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 58/212 (27%), Gaps = 21/212 (9%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL--HGITDEFLKDKPSFSSIF 80
              I ++ A+    +++T   F  +          +   L   G+T    + +    +I 
Sbjct: 158 RASIFQLSAIGFSHHTQTAPFFNRYFDDPNFLPDKKLAGLSATGLTTVAYEAQGDPLTIL 217

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--------PSRIIDTLSIARR 132
             F     +     +  +   D+  I   L +  +            P  I D  +    
Sbjct: 218 KAFIQQVIQPQLPLVFWDQTQDMKHIRLLLTQYYQQLTPTEQQLVSRPVTIFDAQAYTNT 277

Query: 133 KHPSSRND-------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                 +        LN L   + I+  H+  H A+ D      V +K+     Q     
Sbjct: 278 LINRGNHKVGSHDLPLNGLAALFNISNPHQ--HNAIWDVQTTELVMVKLAELTHQTP--V 333

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
            T               +  ++   P     +
Sbjct: 334 ITTPPAPIALPATVPAVVPSIQTPSPTPQHAS 365


>gi|33863427|ref|NP_894987.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
 gi|33640876|emb|CAE21332.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
          Length = 986

 Score = 37.1 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 52/155 (33%), Gaps = 19/155 (12%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M  +++++ +  D ETT L+     ++ +G                ++ P G       L
Sbjct: 379 MGCRDRLKPVAIDTETTALNPFCAELVGLGVCWGEGLQDL-----AYI-PIGHHPPAALL 432

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
                       +    ++      +    +      NAK+D   +      +       
Sbjct: 433 D------ADAACQLPLEAVLKAIAPWLASNDHPKALQNAKYDRLILLRHGLALEGV---- 482

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKR-YGITISH 154
             ++DTL     +  ++++ L  + +R + IT + 
Sbjct: 483 --VMDTLLADYLRDAAAKHGLEVMAEREFKITPTG 515


>gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
 gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
          Length = 921

 Score = 37.1 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 40/138 (28%), Gaps = 32/138 (23%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET G+D     ++ +      +        + +  P    +   A           
Sbjct: 351 AFDTETDGIDPLKAGLVGMSFAVKEN--------EAWYVPVPANSVEAA----------- 391

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                   +   F        +  I  N KFD+  +     ++           DT+   
Sbjct: 392 -------KVVERFSPALQNPKSLKIGQNIKFDILVLRKYNVKVAGPLF------DTMIAH 438

Query: 131 RRKHPSSRNDLNSLCKRY 148
              +P  R+ ++ L + Y
Sbjct: 439 YLLNPELRHGMDYLAETY 456


>gi|50118986|ref|YP_048153.1| DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
 gi|49609512|emb|CAG72945.1| putative DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
          Length = 929

 Score = 37.1 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 27/139 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET GLD+    +I +                  + P      P A   H   D   
Sbjct: 354 AFDTETDGLDTLTANLIGL---------------SFAIKPGEAAYLPLA---HDYLDA-- 393

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++   + + + F     ++    I  N KFD G +         D        DT+  +
Sbjct: 394 PEQLDRAQVLALFKPLLEDEKLLKIGQNLKFDKGVMQR------YDIDLRGIAFDTMLES 447

Query: 131 RRKHP-SSRNDLNSLCKRY 148
                 + R+D++SL +RY
Sbjct: 448 YVLDSVAGRHDMDSLAERY 466


>gi|194426727|ref|ZP_03059280.1| endodeoxyribonuclease [Escherichia coli B171]
 gi|194415063|gb|EDX31332.1| endodeoxyribonuclease [Escherichia coli B171]
          Length = 190

 Score = 37.1 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 65/201 (32%), Gaps = 50/201 (24%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC----------PNGRKN 55
           M  ++ D+ET G + K+  I+ IGAV    +     + F   +           P+G   
Sbjct: 1   MNNLMIDLETMGKN-KDAPIVSIGAVFFTPEIGDIGQEFYTVVSLESAMEQGATPDGDTI 59

Query: 56  ------SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVG 104
                 SPEA     I D       S S   SE   F N      +  +   + A FD  
Sbjct: 60  LWWLKQSPEARAAICIDDTL-----SISDALSELNHFINRHADNTKYLKVWGNGATFDNV 114

Query: 105 FINAELQRIN-KDPLDPSRIID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            +    +R     P       D     TL  +    P           +  +      +H
Sbjct: 115 ILRGAYERAGQICPWAYWNDHDVRTIVTLGRSIGFDP-----------KMDMPFDG-DRH 162

Query: 159 GALLDSHLLSD----VYIKMM 175
            AL D+   +     ++ K++
Sbjct: 163 NALADARHQAKYVSAIWQKLI 183


>gi|168697886|ref|ZP_02730163.1| hypothetical protein GobsU_00080 [Gemmata obscuriglobus UQM 2246]
          Length = 1454

 Score = 37.1 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 17/84 (20%)

Query: 92   AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR---NDLNSLC-KR 147
             E +  N  FD+ F+     R+      P R+ DT+  ++  H  +R   + L  L  + 
Sbjct: 967  VEVVGQNLGFDLPFLM----RLG---FVPGRVRDTMLASQVLHAGNRTTGHSLKDLAHRH 1019

Query: 148  YGITISHRSKHGA-----LLDSHL 166
             G+ +  +    A     L D+HL
Sbjct: 1020 LGLELD-KGLQTADWSGPLTDAHL 1042


>gi|46519343|gb|AAS99991.1| JM14 [Macaca fuscata rhadinovirus]
          Length = 1012

 Score = 37.1 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 46/142 (32%), Gaps = 25/142 (17%)

Query: 8   RKIVFDIETTG------LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           R + FDIE  G           D +I+I  V                   G  N P  L 
Sbjct: 293 RIVAFDIECMGEAGFPCATRDGDAVIQISCVFYTTR-------------EGAPNPPNILF 339

Query: 62  LHG----ITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHN-AKFDVGFINAELQRINK 115
             G    I D  + + PS   +   F+    + +      +N + FD+ ++     ++  
Sbjct: 340 SVGTCDPIPDTDVLEFPSEYDMLVSFFAMLRDFEVDFLTGYNISNFDLPYLITRASQVYN 399

Query: 116 DPLDPSRIIDTLSIARRKHPSS 137
             L+    I T SI     P  
Sbjct: 400 LRLNEYTKIKTGSIFEVHEPRG 421


>gi|116206844|ref|XP_001229231.1| hypothetical protein CHGG_02715 [Chaetomium globosum CBS 148.51]
 gi|88183312|gb|EAQ90780.1| hypothetical protein CHGG_02715 [Chaetomium globosum CBS 148.51]
          Length = 228

 Score = 37.1 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 12 FDIETTGLDSKNDRIIEIGAV 32
           D E TGLD + D IIEI  +
Sbjct: 22 IDCEMTGLDPETDAIIEIYCI 42


>gi|323173135|gb|EFZ58766.1| DNA-directed DNA polymerase [Escherichia coli LT-68]
          Length = 385

 Score = 37.1 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN 142
            ++           HN+ FD   +   + R+        R  DT+  A          L 
Sbjct: 58  LYEAIAAPETLLYFHNSHFDRTVLRYAMPRL---APPVERWRDTMVQA--LAHGLPGSLG 112

Query: 143 SLCKRYGIT 151
            LC+  G+ 
Sbjct: 113 ELCEILGVP 121


>gi|322418776|ref|YP_004197999.1| hypothetical protein GM18_1253 [Geobacter sp. M18]
 gi|320125163|gb|ADW12723.1| hypothetical protein GM18_1253 [Geobacter sp. M18]
          Length = 186

 Score = 37.1 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 63/177 (35%), Gaps = 11/177 (6%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITD 67
            +  D+E  G       ++ +G+           TF V L    G    P+ ++  G   
Sbjct: 6   YVSTDVEVDGPIPGPHSMLSLGSAAFFPDKTLVGTFSVNLELLPGAAADPDTMQWWGKHQ 65

Query: 68  EFLKDKPSF----SSIFSEFWDFFN--EQNAEWIAHNAKFDVGFINAELQRI-NKDPLDP 120
           E            +S  +++  +         ++ + A FD  F+   L R   + P   
Sbjct: 66  EAWAACRKEPRDPASAMADYAAWLENLPGAPVFVGYPAAFDFMFVYWYLIRFTGRSPFSF 125

Query: 121 SR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176
           S   I T+++   +    +    ++ KR+   + H   H AL D+     ++  M+ 
Sbjct: 126 SALDIKTMAMTLLRQDFRKATKKNMPKRWFDPVPH--THVALDDALEQGRLFCNMLA 180


>gi|167850580|ref|ZP_02476088.1| DNA polymerase I [Burkholderia pseudomallei B7210]
          Length = 622

 Score = 37.1 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    +I+ +                  + P      P A        +  
Sbjct: 48  AFDTETTSLDPMRAQIVGL---------------SFSVEPGHAAYVPVA----HRGPDMP 88

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              PS   + ++   +  +   + +  + K+D   +      +N          DTL  +
Sbjct: 89  AQLPS-DEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE------HDTLLES 141

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 142 YVLESHRTHDMDSLALRHLGV 162


>gi|167820743|ref|ZP_02452423.1| DNA polymerase I [Burkholderia pseudomallei 91]
          Length = 622

 Score = 37.1 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD     I+ +                  + P      P A        +  
Sbjct: 48  AFDTETTSLDPMRAEIVGL---------------SFSVEPGHAAYVPVA----HRGPDMP 88

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P    + ++   +  +   + +  + K+D   +      +N          DTL  +
Sbjct: 89  AQLPR-DEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE------HDTLLES 141

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 142 YVLESHRTHDMDSLALRHLGV 162


>gi|167724604|ref|ZP_02407840.1| DNA polymerase I [Burkholderia pseudomallei DM98]
          Length = 620

 Score = 37.1 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD     I+ +                  + P      P A        +  
Sbjct: 46  AFDTETTSLDPMRAEIVGL---------------SFSVEPGHAAYVPVA----HRGPDMP 86

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P    + ++   +  +   + +  + K+D   +      +N          DTL  +
Sbjct: 87  AQLPR-DEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE------HDTLLES 139

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 140 YVLESHRTHDMDSLALRHLGV 160


>gi|307192585|gb|EFN75773.1| Poly(A)-specific ribonuclease PARN [Harpegnathos saltator]
          Length = 600

 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 40/136 (29%), Gaps = 32/136 (23%)

Query: 71  KDKPSFSSIF--SEFWDFFNEQNAEWIAHNAKFDVGFINAEL-----------QRINKDP 117
           K+K  F      S             + HN   D+  I  +            + +  D 
Sbjct: 244 KEKLEFDQAVGVSNLLKKVLNSGKTIVGHNMLLDLCHIIRQFVTPLPADYSEFKNLVHDL 303

Query: 118 LD---PSRIIDTLSIARRKHPSSRNDLNSLCKR-----YGIT-----------ISHRSKH 158
                 +++I      +     S  +LN+L K      + I            IS    H
Sbjct: 304 FPSLLDTKVICQSQPFKEHISPSSTNLNTLLKIMSKPPFSIPDVEPIEGCSYSISTEKLH 363

Query: 159 GALLDSHLLSDVYIKM 174
            A  D+++    +I +
Sbjct: 364 EAGYDAYITGLCFIAL 379


>gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7]
          Length = 921

 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 40/138 (28%), Gaps = 32/138 (23%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET G+D     ++ +      +        + +  P    +   A           
Sbjct: 351 AFDTETDGIDPLKAGLVGMSFAVKEN--------EAWYVPVPANSVEAA----------- 391

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                   +   F        +  I  N KFD+  +     ++           DT+   
Sbjct: 392 -------KVVERFSPALQNPKSLKIGQNIKFDILVLRKYNVKVAGPLF------DTMIAH 438

Query: 131 RRKHPSSRNDLNSLCKRY 148
              +P  R+ ++ L + Y
Sbjct: 439 YLLNPELRHGMDYLAETY 456


>gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D]
 gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D]
          Length = 937

 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 53/150 (35%), Gaps = 27/150 (18%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M R +++  +  D ETT +D    +++ I                + + P      P A 
Sbjct: 348 MQRLDEVDLVCIDTETTSIDPMLAQLVGI---------------SLSVKPGEACYIPVAH 392

Query: 61  K---LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           +   + G+       + S  ++ +    +  +++ + +  + K+D           N D 
Sbjct: 393 RGPDVAGL---DAAAQLSRDTVLARMKLWLEDESRKKVGQHLKYDAHVF------ANHDI 443

Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKR 147
                  DT+  +        + +++L +R
Sbjct: 444 ALRGIEHDTMLESYVLESHRNHGMDALAER 473


>gi|238015266|gb|ACR38668.1| unknown [Zea mays]
          Length = 221

 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 100 KFDVGFINAELQRINK--DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK 157
            +D   +     R  +   P   +R I+     +  +   R +L    +  G+T   R  
Sbjct: 23  NWDCRIMLESECRFKRIRKPPYFNRWINLRVPFQEVYGDVRCNLKEAVQLAGLTWEGR-A 81

Query: 158 HGALLDSHLLSDVYIKMMVGG 178
           H  L D+   + +   +M  G
Sbjct: 82  HCGLDDARNTARLLALLMHRG 102


>gi|169839896|ref|ZP_02873084.1| hypothetical protein cdivTM_22677 [candidate division TM7
          single-cell isolate TM7a]
          Length = 32

 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 35 LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
          ++       F  F+ P      P+  KL  ITDE
Sbjct: 1  MERKLIGE-FSEFVNPEI-PIPPKITKLTTITDE 32


>gi|156548166|ref|XP_001607788.1| PREDICTED: similar to LOC524155 protein [Nasonia vitripennis]
          Length = 608

 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 41/141 (29%), Gaps = 31/141 (21%)

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           +++    S +  +  D         + HN   D+  I  +      +     + +     
Sbjct: 250 VQEAVGLSVLLRKIAD----SGKVIVGHNMLLDLCHIIHQFFAPLPESYHEFKSLVHCLF 305

Query: 130 ARRK-----------HPSSRNDLNSLCKR-----YGIT-----------ISHRSKHGALL 162
            R               S  ++LN L +      + I            +++   H A  
Sbjct: 306 PRLLDTKIICQSGQFKDSVPSNLNQLLETLHSAPFSIPETENIPDRSYKLNNDKSHEAGY 365

Query: 163 DSHLLSDVYIKMMVGGSQINF 183
           D+++    +I +     ++  
Sbjct: 366 DAYITGLCFIALCNRLGELQI 386


>gi|149247154|ref|XP_001528002.1| hypothetical protein LELG_00522 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146447956|gb|EDK42344.1| hypothetical protein LELG_00522 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 725

 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 10/108 (9%)

Query: 9   KIVFDIETTG------LDSKNDRIIEIGAVELLDYSKTNRTFQ-VFLCPNGRKNSPEALK 61
            IVFD  TT       +   +  +I +    +   S    +FQ  F+ P     +    +
Sbjct: 5   YIVFDSITTCDDTNTYISKDSTELIYLAWSVIDVASLEVLSFQSTFIKPLNTPITQFCTR 64

Query: 62  LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109
              +T E +++  SF         +      E I  N +F    ++  
Sbjct: 65  KCNLTWEHVRNAGSFKDAIDTLDTYMK---LEIIGENREFTFIVLDDF 109


>gi|114777011|ref|ZP_01452031.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
 gi|114552532|gb|EAU54992.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
          Length = 917

 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 29/143 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ETT L + +  ++ +               + +  P G +           + + 
Sbjct: 336 IALDTETTSLQAHDAELVGLSFATRAG--------EAWYIPVGHR-----------STDL 376

Query: 70  LKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
           L   P       + +       +       HN K+D   +    +R   +        D+
Sbjct: 377 LVPAPQQLPLQHVLAALKPLLEDAAKRKCGHNLKYDAQVL----RRAGIELA--GIAADS 430

Query: 127 LSIARRKHPSS-RNDLNSLCKRY 148
           + +A   +P+     L+S+ + Y
Sbjct: 431 MLLAYCLYPAKYPPSLDSVAEDY 453


>gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
 gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
          Length = 874

 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 78  SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS- 136
              ++  +   +  A  + H    D+  +   L     +P  P+   DT   A    PS 
Sbjct: 360 EALADPAELL-DSGARLVGH----DLKPLYNWLYSQGIEP--PAPAFDTALAAYLLDPSR 412

Query: 137 SRNDLNSLCKRYGI 150
           S  DL  LC+++G+
Sbjct: 413 SSYDLADLCRQHGL 426


>gi|225572238|ref|ZP_03781102.1| hypothetical protein RUMHYD_00532 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040300|gb|EEG50546.1| hypothetical protein RUMHYD_00532 [Blautia hydrogenotrophica DSM
           10507]
          Length = 334

 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 51/138 (36%), Gaps = 32/138 (23%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           ++K + ++ DIETTG   KN ++  IG +   +          ++         +   L 
Sbjct: 24  QSKHKYVLLDIETTGFTPKNSQLYMIGCIHFSEN--------SWI---------QTQWL- 65

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFN--EQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120
                      +F   +    +F    + N  +I +N  +FD+ ++  +  +       P
Sbjct: 66  ---------AETFDEEWKILQEFLTHFQGNFHFITYNGDRFDLSYLTDKKSQCQCIKALP 116

Query: 121 SRIIDTLSIARRKHPSSR 138
            +   +L + +   P  +
Sbjct: 117 WQS--SLDLYKLLKPYKK 132


>gi|21428924|gb|AAM50181.1| GH16479p [Drosophila melanogaster]
          Length = 230

 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 58/163 (35%), Gaps = 21/163 (12%)

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS--- 137
           ++  +      +    HN  F   F+ ++++R  +  ++ +R+ +    AR   PS    
Sbjct: 27  AQLLEVVGAAGSAQGHHNLAFLSAFLRSDVERCLEILIETNRLPEAAFFARTYLPSQMSR 86

Query: 138 -----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
                R  L  + ++ G +++          +    +++  +   G  +       E+R 
Sbjct: 87  IVELWREKLGKVNEKAGQSLA--------DPAQYT-NLFPGL---GDALRVEQHLQEERA 134

Query: 193 FKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            K   +   N+ L     PL   +   E     + ++   K A
Sbjct: 135 RKAPARLAANLPLNSERHPL-QELFAAEQGAAGQHLEEKVKPA 176


>gi|114769797|ref|ZP_01447407.1| exonuclease, putative [alpha proteobacterium HTCC2255]
 gi|114549502|gb|EAU52384.1| exonuclease, putative [alpha proteobacterium HTCC2255]
 gi|161170293|gb|ABX59263.1| 5-exonuclease family protein [uncultured marine bacterium
           EB000_55B11]
 gi|297183821|gb|ADI19944.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 204

 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 36/146 (24%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET GL+   DR+  I       ++   +     + P                  
Sbjct: 19  IVAIDTETMGLNPMRDRLCVIQFSSGDGHAHIVQ-----IEP------------------ 55

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              D P              +QN   + H A+FD+  +     +IN  P+  ++I   L 
Sbjct: 56  ---DAPQ----APNICKILLDQNKVKLFHFARFDIAILKHHF-KINISPVYCTKIASKLV 107

Query: 129 IARRKHPSSRNDLNSLCKR-YGITIS 153
                  ++++ L +L +    I IS
Sbjct: 108 RTY----TNKHGLKNLLREMLSIEIS 129


>gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT]
 gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT]
          Length = 910

 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 40/145 (27%), Gaps = 33/145 (22%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETT LD              +       +F   +        P A    G     
Sbjct: 335 VALDTETTSLDP-------------MQAKLVGMSFS--VEAGKAAYVPLAHDYTG----- 374

Query: 70  LKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
               P    F++   +      + +   +  N K+D   +      +N          DT
Sbjct: 375 ---APQQLDFTAALRQLRPMLEDASIPKLGQNLKYDKHVLANHGIALNGIT------HDT 425

Query: 127 LSIARRKHPSSRNDLNSLC-KRYGI 150
           L  +        + ++ L  +  G+
Sbjct: 426 LLQSYVLESHRTHGMDDLAMRHLGV 450


>gi|113968935|ref|YP_732728.1| oligoribonuclease [Shewanella sp. MR-4]
 gi|114048927|ref|YP_739477.1| oligoribonuclease [Shewanella sp. MR-7]
 gi|123130769|sp|Q0HMP6|ORN_SHESM RecName: Full=Oligoribonuclease
 gi|123131054|sp|Q0HR35|ORN_SHESR RecName: Full=Oligoribonuclease
 gi|113883619|gb|ABI37671.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4]
 gi|113890369|gb|ABI44420.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7]
          Length = 181

 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 47/134 (35%), Gaps = 11/134 (8%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVF-----LCPNGRKNSPEAL 60
            D+E TGL+   DR+IEI  +        +         Q       +    +K+  E+ 
Sbjct: 11  IDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDEVLAAMDDWNQKHHGESG 70

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            +  +    + +  + +   +    +  +  +    ++   D  F+N  ++ +       
Sbjct: 71  LIDRVRASQVNEAQAVAQTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELEDYFHYR 130

Query: 121 SRIIDTLSIARRKH 134
           +  + T+    ++ 
Sbjct: 131 NLDVSTVKELVKRW 144


>gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
 gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
          Length = 921

 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 40/138 (28%), Gaps = 32/138 (23%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET G+D     ++ +      +        + +  P    +   A           
Sbjct: 351 AFDTETDGIDPLKAGLVGMSFAVKEN--------EAWYVPVPANSVEAA----------- 391

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                   +   F        +  I  N KFD+  +     ++           DT+   
Sbjct: 392 -------KVVERFSPALQNPKSLKIGQNIKFDILVLRKYNVKVAGPLF------DTMIAH 438

Query: 131 RRKHPSSRNDLNSLCKRY 148
              +P  R+ ++ L + Y
Sbjct: 439 YLLNPELRHGMDYLAETY 456


>gi|212527104|ref|XP_002143709.1| RNA exonuclease, putative [Penicillium marneffei ATCC 18224]
 gi|210073107|gb|EEA27194.1| RNA exonuclease, putative [Penicillium marneffei ATCC 18224]
          Length = 462

 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 65/174 (37%), Gaps = 16/174 (9%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           K + +  D E  GL      +  + AV++L           ++ P  + ++  +  + G+
Sbjct: 143 KRKIVAIDCEMVGLWKNVACVALLCAVDVLTGEIL---LNTYVDPVSKVHAWRST-VSGV 198

Query: 66  TDEFLKDKPS-------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
           T + + +          +++     W++ + +    I H  + D+  +     RI    +
Sbjct: 199 TRKSMSEAIEQGQALRGWAAAREALWEYIDAE-TIIIGHALQNDLNVLGIFHSRIVDTAI 257

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNS-LCKRYGITI-SHRSKHGALLDSHLLSDV 170
             S+ +     ++R  P S   L   L     + I + +  H  L D+    ++
Sbjct: 258 LASQAVFPEIQSKR-FPES-YGLKRLLLSWLKMMIQTGKKGHDCLEDTFATREL 309


>gi|190149819|ref|YP_001968344.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 957

 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 59/155 (38%), Gaps = 20/155 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLCPNGRK 54
           + N+++ +  D ET  LDS +  ++ +             L + +     QV L P    
Sbjct: 351 KINQVKLVAVDTETDNLDSMSANLVGVSFGLANGDACYIPLMHKE-----QVTLEPQQSD 405

Query: 55  N-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             + +A      + E  K + + ++  +E        + + I  N K+D+        ++
Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANHGVQV 465

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                      DT+  +   + + R++++ L  RY
Sbjct: 466 AGVAF------DTMLESYTLNSTGRHNMDELADRY 494


>gi|269837619|ref|YP_003319847.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
 gi|269786882|gb|ACZ39025.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
          Length = 915

 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 37/133 (27%), Gaps = 31/133 (23%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D+ETT  D    R++ I                 ++  N               DE 
Sbjct: 334 IALDVETTSTDPMTARLVGIALATSGQR-------SFYVPVNHAN-----------DDEQ 375

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           L        +         + N    AH+ K+D   +    +R       P    DT+  
Sbjct: 376 L----DADEVREALSPLLADPNTVVYAHHGKYDALVL----ERAGYP--RPRIAFDTMIA 425

Query: 130 ARRKHPSSRNDLN 142
           A        N L+
Sbjct: 426 AYLL---GENALD 435


>gi|190346905|gb|EDK39093.2| hypothetical protein PGUG_03191 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 455

 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 25/173 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG--- 64
           + I  D E  G  ++   ++ + A++     +      + + P G        K  G   
Sbjct: 294 KAIGIDCEM-GFTTQGFELLRVTAIDFFSGKEVID---ILVKPIGEVVDLN-TKFSGVAS 348

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I D    D  SF    S+     + +    I H  + D+  +    +R+          I
Sbjct: 349 IKD----DADSFWEGISKLGQVMDHR-TILIGHGLENDLNAMRILHKRV----------I 393

Query: 125 DT--LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT  L    +  P  R  L  L   Y   +    +H +  DS    DV    +
Sbjct: 394 DTAILYPKHKATPKFRYSLKQLAFEYLGRVIQTGEHDSGEDSLAAIDVVKHFI 446


>gi|312131262|ref|YP_003998602.1| 3'-5' exonuclease, polb [Leadbetterella byssophila DSM 17132]
 gi|311907808|gb|ADQ18249.1| 3'-5' exonuclease, PolB [Leadbetterella byssophila DSM 17132]
          Length = 232

 Score = 37.1 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 38/129 (29%)

Query: 82  EFWDFFNEQNA----EWIAHN-AKFDVGFINAELQRINKDPLD----------PSRIIDT 126
           +F +      A       AHN  +FD  ++   +        D              +DT
Sbjct: 88  QFKELIERHPAGKRLILCAHNGKEFDFPYLCRRMIIHGIPLPDVLQMSGKKPWEIPHLDT 147

Query: 127 LSIARRKHPSSRN--DLNSLCKRYGIT----------------ISHRSK---HGALLDSH 165
           L + +      ++   L+ L    GI                 +  R     H  + D  
Sbjct: 148 LEMWK--FGDYKHFTSLDLLAAVLGIEGSKGSLDGSKVNAAYYLEDRITDIIHYCMEDVV 205

Query: 166 LLSDVYIKM 174
           +L+ V+ ++
Sbjct: 206 VLAQVFRRL 214


>gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 952

 Score = 37.1 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 22/150 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLC-PNGRKNSPE 58
           R I  D ET  LD+ +  ++ I             L + +  +  Q  +     R  SP 
Sbjct: 353 RLIAVDTETDSLDAMSANLVGISFALENGEACYIPLGHKQKAQPQQADMFGDEERSESPS 412

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                  +DE +K++ + ++  S+          + I  N K+D+         +     
Sbjct: 413 -------SDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANYGIELQGVAF 465

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                 DT+  +  ++ + R++++ L  RY
Sbjct: 466 ------DTMIESYTQNSTGRHNMDDLAARY 489


>gi|83941853|ref|ZP_00954315.1| DNA polymerase I [Sulfitobacter sp. EE-36]
 gi|83847673|gb|EAP85548.1| DNA polymerase I [Sulfitobacter sp. EE-36]
          Length = 932

 Score = 37.1 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 28/146 (19%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI--- 65
            +  D ETTGLD    +++ +                  + P      P   K  G    
Sbjct: 346 YVAVDTETTGLDDMVAQLVGVSLC---------------VEPGKACYIPLIHKARGSDDL 390

Query: 66  --TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
             +D+  + +               + +   I  N K+D          IN  P+D    
Sbjct: 391 FGSDDLAEGQIPTEEALRLLTPMLEDHSILKIGQNMKYDSKIFAQL--GINVAPID---- 444

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRY 148
            DT+ ++   H     + +++L +RY
Sbjct: 445 -DTMLLSYAMHAGLHGHGMDTLSERY 469


>gi|325981763|ref|YP_004294165.1| DNA polymerase I [Nitrosomonas sp. AL212]
 gi|325531282|gb|ADZ26003.1| DNA polymerase I [Nitrosomonas sp. AL212]
          Length = 916

 Score = 37.1 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 44/148 (29%), Gaps = 26/148 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + R +  + +  D ETT L+    +++ I             +      P   +      
Sbjct: 332 LTRLDTAQLVSIDSETTSLNPMQAKLVGISFC--------VESHHAAYLPLMHRYPGVPQ 383

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +L            SF     +   +        +  N K+D         ++N      
Sbjct: 384 QL------------SFDRALKKLKPWLESATKPKLGQNLKYDKHVFANHDIQLNGIA--- 428

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRY 148
               DTL  +        ++++SL  R+
Sbjct: 429 ---HDTLLQSYVLESHRPHNMDSLALRH 453


>gi|319792363|ref|YP_004154003.1| DNA polymerase i [Variovorax paradoxus EPS]
 gi|315594826|gb|ADU35892.1| DNA polymerase I [Variovorax paradoxus EPS]
          Length = 937

 Score = 37.1 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 45/157 (28%), Gaps = 39/157 (24%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
            D ETT LD    +I+ +                  + P      P       +T  +  
Sbjct: 365 IDTETTSLDEMVAQIVGV---------------SFSVEPGEAAYIP-------LTHNY-P 401

Query: 72  DKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           D P       + ++   +      + +  + K+D           N          DT+ 
Sbjct: 402 DAPAQLPIDEVLAKLKPWLENPEKKKLGQHIKYDRHVF------ANHGIEVEGYAHDTML 455

Query: 129 IARRKHPSSRNDLNSLCKRY----GITISH---RSKH 158
            +        + L SL +R+    GI+      +  H
Sbjct: 456 QSYVLEVHKPHGLASLAERHLGRSGISYEDLCGKGAH 492


>gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
 gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
          Length = 921

 Score = 37.1 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 40/138 (28%), Gaps = 32/138 (23%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ET G+D     ++ +      +        + +  P    +   A           
Sbjct: 351 AFDTETDGIDPLKAGLVGMSFAVKEN--------EAWYVPVPANSVEAA----------- 391

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                   +   F        +  I  N KFD+  +     ++           DT+   
Sbjct: 392 -------KVVERFSPALQNPKSLKIGQNIKFDILVLRKYNVKVAGPLF------DTMIAH 438

Query: 131 RRKHPSSRNDLNSLCKRY 148
              +P  R+ ++ L + Y
Sbjct: 439 YLLNPELRHGMDYLAETY 456


>gi|289582632|ref|YP_003481098.1| hypothetical protein Nmag_2984 [Natrialba magadii ATCC 43099]
 gi|289532185|gb|ADD06536.1| hypothetical protein Nmag_2984 [Natrialba magadii ATCC 43099]
          Length = 562

 Score = 37.1 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 75/223 (33%), Gaps = 50/223 (22%)

Query: 9   KIVFDIETTGLDSKNDRII-EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            +  DIET GL      II +IG  +       + T + F+                   
Sbjct: 344 PLCLDIETDGLSPT---IIWQIGVYDPE-----SDTHRAFVE------------------ 377

Query: 68  EFLKDKPSF-SSIFSEFWDFFNEQ--NAEWIAHNAK-FDVGFINAELQRINKDPLDPS-- 121
              +D P+  +S+  EF D+      N   +  N + FD   ++A + R   + +D    
Sbjct: 378 ---RDDPTDGASVVREFCDWLLGVHPNRALLTWNGRGFDYRHLDAFVARHCPEYVDDWES 434

Query: 122 -RIIDTLSIARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173
               D    A           P   N+L+ +    G         GA       +  Y +
Sbjct: 435 IPKFDLYRWATDREDTGNALLPGRTNELDVVAAELGYEGLGTGLDGA-----RTAAAYQR 489

Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            M  G      +  +E  + +++ + + ++    R+ P  + +
Sbjct: 490 FMRTGESAVLEWDRHE-AYCEDDCRALWHVYERLRNAPRASGV 531


>gi|296414370|ref|XP_002836874.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295632716|emb|CAZ81065.1| unnamed protein product [Tuber melanosporum]
          Length = 288

 Score = 37.1 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 20  DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--ALKLHGITDEFLKDKPSFS 77
            ++  RI E G + L D  K + T+ +   P  ++   E   +++ GIT  F+   P F 
Sbjct: 54  SAEPSRITEEGKILLRDTMKVSHTYDLRSVPELKRMEKETPIIEIEGITRNFV---PVFK 110

Query: 78  SI 79
            +
Sbjct: 111 DV 112


>gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 952

 Score = 37.1 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 22/150 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLC-PNGRKNSPE 58
           R I  D ET  LD+ +  ++ I             L + +  +  Q  +     R  SP 
Sbjct: 353 RLIAVDTETDSLDAMSANLVGISFALENGEACYIPLGHKQKAQPQQADMFGDEERSESPS 412

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                  +DE +K++ + ++  S+          + I  N K+D+         +     
Sbjct: 413 -------SDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANYGIELQGVAF 465

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                 DT+  +  ++ + R++++ L  RY
Sbjct: 466 ------DTMIESYTQNSTGRHNMDDLAARY 489


>gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
 gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
          Length = 937

 Score = 37.1 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 51/152 (33%), Gaps = 31/152 (20%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M R +++  +  D ETT +D    +++ I                + + P      P A 
Sbjct: 348 MQRLDEVDLVCIDTETTSIDPMLAQLVGI---------------SLSVKPGEACYIPVAH 392

Query: 61  KLHGITDEFLKDKPSFSS-----IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
           +  G     +    + +      + +    +  +++ + +  + K+D           N 
Sbjct: 393 R--G---PDVAGFDAAAQLSRDTVLARMKLWLEDESRKKVGQHLKYDAHVF------ANH 441

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR 147
           D        DT+  +        + +++L +R
Sbjct: 442 DIALRGIEHDTMLESYVLESHRNHGMDALAER 473


>gi|304361038|ref|YP_003857224.1| gp93 [Mycobacterium phage LeBron]
 gi|302858307|gb|ADL71056.1| gp93 [Mycobacterium phage LeBron]
          Length = 259

 Score = 36.7 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 41/151 (27%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP----EALKLH 63
           R +V DIET         I+E+              F+ ++  +  +        A K  
Sbjct: 4   RVLVLDIET------QRAIVEVF-----------DLFRPWIGIDQVRVPKRVLCFAAKWR 46

Query: 64  GITDEFLKDKPSFSSIFSE------------FWDFFNEQNAEWIAHN-AKFDVGFINAEL 110
           G      +DK  F + + +             W+  +  +   +  N  +FD+ ++ AE 
Sbjct: 47  G------EDKVIFKAAWDDNDEDAYRRMMQAAWELLDSAD-IVVTWNGDRFDMQWLEAEF 99

Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDL 141
            R+      P + +D +  A+R        L
Sbjct: 100 LRLGMPRPMPYKSVDLIKTAKRWFKGGLMSL 130


>gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
 gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
          Length = 907

 Score = 36.7 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 27/142 (19%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ETTGLD              +D      +F   + P+     P A +  G     
Sbjct: 332 VCLDTETTGLDV-------------MDARLVGMSFA--ITPHEAAYLPLAHRYPG----- 371

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + D+    +  +    +   +  + +  N K+D           N          DTL  
Sbjct: 372 VPDQLDLDATLARLRPWLESEQHKKLGQNLKYDKHIF------ANHGIALRGISDDTLLE 425

Query: 130 ARRKHPSSRNDLNSLC-KRYGI 150
           +        +D++SL  +  G+
Sbjct: 426 SYVLESHKSHDMDSLALRHLGV 447


>gi|239932165|ref|ZP_04689118.1| GTP-binding protein EngA [Streptomyces ghanaensis ATCC 14672]
 gi|291440533|ref|ZP_06579923.1| GTP-binding protein EngA [Streptomyces ghanaensis ATCC 14672]
 gi|291343428|gb|EFE70384.1| GTP-binding protein EngA [Streptomyces ghanaensis ATCC 14672]
          Length = 496

 Score = 36.7 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 153 SHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
           +H   HGAL D+      Y + M   ++  F  +  E          +P ++++ R 
Sbjct: 16  AHEHDHGALGDAE-----YAEFMELAAEEGFDLEDVEGAIEAAGHGPLPVLAVVGRP 67


>gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13]
 gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13]
          Length = 923

 Score = 36.7 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    +I+ +                  + P      P A        +  
Sbjct: 349 AFDTETTSLDPMRAQIVGL---------------SFSVEPGHAAYVPVA----HRGPDMP 389

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P    + ++   +  +   + +  + K+D   +      +N          DTL  +
Sbjct: 390 AQLPR-DEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE------HDTLLES 442

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 443 YVLESHRTHDMDSLALRHLGV 463


>gi|146418994|ref|XP_001485462.1| hypothetical protein PGUG_03191 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 455

 Score = 36.7 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 25/173 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG--- 64
           + I  D E  G  ++   ++ + A++     +      + + P G        K  G   
Sbjct: 294 KAIGIDCEM-GFTTQGFELLRVTAIDFFSGKEVID---ILVKPIGEVVDLN-TKFSGVAS 348

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           I D    D  SF    S+     + +    I H  + D+  +    +R+          I
Sbjct: 349 IKD----DADSFWEGISKLGQVMDHR-TILIGHGLENDLNAMRILHKRV----------I 393

Query: 125 DT--LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           DT  L    +  P  R  L  L   Y   +    +H +  DS    DV    +
Sbjct: 394 DTAILYPKHKATPKFRYSLKQLAFEYLGRVIQTGEHDSGEDSLAAIDVVKHFI 446


>gi|308490432|ref|XP_003107408.1| hypothetical protein CRE_13961 [Caenorhabditis remanei]
 gi|308251776|gb|EFO95728.1| hypothetical protein CRE_13961 [Caenorhabditis remanei]
          Length = 2200

 Score = 36.7 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 20/121 (16%)

Query: 8   RKIVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRTF-QVFLCPNGRKNSPEAL 60
           + + FDIETT L     D ++D I+ I   V+   +   NR      +     + +P+A 
Sbjct: 269 KVLAFDIETTKLPLKFPDRESDEIMMISYMVDGRGFLIINREIVSADIN--AFEYTPKAE 326

Query: 61  ---KLHGITDEFLKDKPSFSSIFSEFWD-FFNEQNAEWIAHNAK-FDVGFINAELQRINK 115
              +        + ++   +++  +F+D F   +    + +N   FD  F+ A  +    
Sbjct: 327 YKGEFT------VWNEKDETALIRKFFDHFLQVRPNIVVTYNGDFFDWPFVEARAKIRGF 380

Query: 116 D 116
           +
Sbjct: 381 N 381


>gi|318061403|ref|ZP_07980124.1| GTP-binding protein Der [Streptomyces sp. SA3_actG]
 gi|318078001|ref|ZP_07985333.1| GTP-binding protein Der [Streptomyces sp. SA3_actF]
          Length = 488

 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 9/62 (14%)

Query: 152 ISHRSK----HGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207
             H       HGAL D+      Y + M   ++  F  +  ED   +     +P ++++ 
Sbjct: 2   NDHHPFEGEEHGALGDAE-----YERFMELAAEEGFDVEDVEDAIGEAGHGPLPRLAVVG 56

Query: 208 RD 209
           R 
Sbjct: 57  RP 58


>gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177]
 gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
 gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
          Length = 923

 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    +I+ +                  + P      P A        +  
Sbjct: 349 AFDTETTSLDPMRAQIVGL---------------SFSVEPGHAAYVPVA----HRGPDMP 389

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P    + ++   +  +   + +  + K+D   +      +N          DTL  +
Sbjct: 390 AQLPR-DEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE------HDTLLES 442

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 443 YVLESHRTHDMDSLALRHLGV 463


>gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
 gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
          Length = 952

 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 22/150 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLC-PNGRKNSPE 58
           R I  D ET  LD+ +  ++ I             L + +  +  Q  +     R  SP 
Sbjct: 353 RLIAVDTETDSLDAMSANLVGISFALENGEACYIPLGHKQKAQPQQADMFGDEERSESPS 412

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118
                  +DE +K++ + ++  S+          + I  N K+D+         +     
Sbjct: 413 -------SDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANYGIELQGVAF 465

Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                 DT+  +  ++ + R++++ L  RY
Sbjct: 466 ------DTMIESYTQNSTGRHNMDDLAARY 489


>gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668]
 gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668]
          Length = 923

 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    +I+ +                  + P      P A        +  
Sbjct: 349 AFDTETTSLDPMRAQIVGL---------------SFSVEPGHAAYVPVA----HRGPDMP 389

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P    + ++   +  +   + +  + K+D   +      +N          DTL  +
Sbjct: 390 AQLPR-DEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE------HDTLLES 442

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 443 YVLESHRTHDMDSLALRHLGV 463


>gi|33300835|ref|NP_877463.1| hypothetical protein phiKMVp24 [Pseudomonas phage phiKMV]
 gi|195546667|ref|YP_002117748.1| hypothetical protein PT5_gp26 [Pseudomonas phage PT5]
 gi|195546729|ref|YP_002117807.1| hypothetical protein PT2_gp28 [Pseudomonas phage PT2]
 gi|33284806|emb|CAD44215.1| hypothetical protein [Enterobacteria phage phiKMV]
 gi|158187628|gb|ABW23105.1| conserved hypothetical phage protein [Pseudomonas phage PT5]
 gi|165880738|gb|ABY70993.1| conserved hypothetical phage protein [Pseudomonas phage PT2]
          Length = 348

 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 66  TDE----FLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           TDE      +  P     +        +E +   + +  +FDV  INA        P  P
Sbjct: 138 TDEVIYMDCQGAPLDDLHLLVALHKLLDEADIIIVQNGKRFDVPKINARFFLNKMPPPRP 197

Query: 121 SRIIDTLSIARRKHPSSRNDLN 142
            ++IDTL IA+++   +   L 
Sbjct: 198 FKVIDTLIIAKQQFAFTSRKLE 219


>gi|300870683|ref|YP_003785554.1| exonuclease [Brachyspira pilosicoli 95/1000]
 gi|300688382|gb|ADK31053.1| exonuclease [Brachyspira pilosicoli 95/1000]
          Length = 297

 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 36/104 (34%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  DIETTG+      +  IG  +  D        QVF+              HG  +
Sbjct: 98  KTVFLDIETTGMKPAKSYVTVIGCYDGKD-------MQVFV--------------HG-KN 135

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAEL 110
           E             +F D+     +  +  N   FD+ F+    
Sbjct: 136 E------------RDFLDYIKNY-SIVVTFNGSCFDIPFLERYF 166


>gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506]
 gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506]
          Length = 981

 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 18/63 (28%), Gaps = 9/63 (14%)

Query: 9   KIVFDIETTGLDSKNDRII---------EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
            +  D ETTGLD     I+         E   V L         F   L P+        
Sbjct: 393 FVAVDTETTGLDPMQADIVGFSLATAPNEACYVPLSHKGGDEGLFSEGLLPDQIPIPDAV 452

Query: 60  LKL 62
             +
Sbjct: 453 AAI 455


>gi|259486196|tpe|CBF83844.1| TPA: RNA exonuclease Rex2, putative (AFU_orthologue; AFUA_3G11820)
           [Aspergillus nidulans FGSC A4]
          Length = 194

 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 13/120 (10%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRT-FQVFLC-PNGR--KNS 56
           + ++    +  D E TGLD   D I++I   +   D +  + T F+  +  P       S
Sbjct: 3   LTRSTDPLVWIDCEMTGLDPTTDHILQICCFITDADLNLLDATGFEAVIHVPQSALDSMS 62

Query: 57  PEALKLHGIT--DEFLKDK-PSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINA 108
              +  HG T   + +++   +  +  ++   +        + A    ++   D  F+  
Sbjct: 63  QWCIDTHGRTGLTQRVQNSTVTPEAAAADLLAYIKRYIPKPRTALLAGNSVHADKAFLAC 122


>gi|26986868|ref|NP_742293.1| DNA polymerase I [Pseudomonas putida KT2440]
 gi|24981469|gb|AAN65757.1|AE016201_9 DNA polymerase I [Pseudomonas putida KT2440]
          Length = 915

 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 38/154 (24%)

Query: 4   KNKMRKI---VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             K+R+     FD ETTGLD++  +++ +                  + P+     P A 
Sbjct: 327 LEKLRQAPLFAFDTETTGLDAQQAQLVGL---------------SFAVEPHEAAYVPLA- 370

Query: 61  KLHGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                     +  P      ++         +     +  NAK+D+  +       N  P
Sbjct: 371 -------HDYEGAPVQLDREAVLLALKPLLEDPAKAKVGQNAKYDINIL------ANGSP 417

Query: 118 LDPSRII--DTLSIARRKHPSS-RNDLNSLCKRY 148
               R +  DT+  +   + ++ R+D++SL ++Y
Sbjct: 418 AIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKY 451


>gi|333028090|ref|ZP_08456154.1| putative GTP-binding protein EngA [Streptomyces sp. Tu6071]
 gi|332747942|gb|EGJ78383.1| putative GTP-binding protein EngA [Streptomyces sp. Tu6071]
          Length = 488

 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 9/62 (14%)

Query: 152 ISHRSK----HGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207
             H       HGAL D+      Y + M   ++  F  +  ED   +     +P ++++ 
Sbjct: 2   NDHHPFEGEEHGALGDAE-----YERFMELAAEEGFDVEDVEDAIGEAGHGPLPRLAVVG 56

Query: 208 RD 209
           R 
Sbjct: 57  RP 58


>gi|302518233|ref|ZP_07270575.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB78]
 gi|302427128|gb|EFK98943.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB78]
          Length = 488

 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 9/62 (14%)

Query: 152 ISHRSK----HGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207
             H       HGAL D+      Y + M   ++  F  +  ED   +     +P ++++ 
Sbjct: 2   NDHHPFEGEEHGALGDAE-----YERFMELAAEEGFDVEDVEDAIGEAGHGPLPRLAVVG 56

Query: 208 RD 209
           R 
Sbjct: 57  RP 58


>gi|182682934|ref|YP_001837058.1| DNA polymerase [Enterobacteria phage EPS7]
 gi|182630646|gb|ACB97578.1| DNA polymerase [Enterobacteria phage EPS7]
          Length = 855

 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 72  DKPSFSSIF-SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           D  S + +         + +N + + HN KFD+ F +  L    +      R+ DT+   
Sbjct: 193 DSDSITEVAVHYLQKILDSKNHQIVFHNLKFDMHFYSYHLGLSFEKAHKERRLHDTMLQH 252

Query: 131 RRK-HPSSRNDLNSLCKRY 148
                    + L SL  +Y
Sbjct: 253 YVLDERRGTHGLKSLAMKY 271


>gi|227497454|ref|ZP_03927686.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226833079|gb|EEH65462.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 649

 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 25/156 (16%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           MR +  D+ET      N  +   G     +    +  F++ L   G        K+  I 
Sbjct: 1   MRSLSLDLET--FSPTN--LATAGVYRYAE----DEAFRILL--FGYSIDGAPAKV--ID 48

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-----PLDPS 121
               + +P    I         +      A NA F+   ++A L+R + D      L P 
Sbjct: 49  LA--RGEP----IPPGILQALTDPTVTKSAFNASFERVCMSAYLRRHHPDLLAEGFLGPR 102

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK 157
               T+  A          L+   K   + I     
Sbjct: 103 GWRCTMVWAASL--GLPMSLDGAAKALRLPIEKDPA 136


>gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9]
          Length = 923

 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    +I+ +                  + P      P A        +  
Sbjct: 349 AFDTETTSLDPMRAQIVGL---------------SFSVEPGHAAYVPVA----HRGPDMP 389

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P    + ++   +  +   + +  + K+D   +      +N          DTL  +
Sbjct: 390 AQLPR-DEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE------HDTLLES 442

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 443 YVLESHRTHDMDSLALRHLGV 463


>gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e]
 gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e]
          Length = 923

 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    +I+ +                  + P      P A        +  
Sbjct: 349 AFDTETTSLDPMRAQIVGL---------------SFSVEPGHAAYVPVA----HRGPDMP 389

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P    + ++   +  +   + +  + K+D   +      +N          DTL  +
Sbjct: 390 AQLPR-DEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE------HDTLLES 442

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 443 YVLESHRTHDMDSLALRHLGV 463


>gi|119713543|gb|ABL97595.1| putative exonuclease [uncultured marine bacterium EB0_39F01]
          Length = 204

 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 36/146 (24%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  D ET GL+   DR+  I        +   +     + P                  
Sbjct: 19  IVAIDTETMGLNPMRDRLCVIQFSSGDGNAHIVQ-----IEP------------------ 55

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
              D P              +QN   + H A+FD+  +     +IN  P+  ++I   L 
Sbjct: 56  ---DAPQ----APNICKILLDQNKVKLFHFARFDIAILKHHF-KINISPVYCTKIASKLV 107

Query: 129 IARRKHPSSRNDLNSLCKR-YGITIS 153
                  ++++ L +L +    I IS
Sbjct: 108 RTY----TNKHGLKNLLREMLSIEIS 129


>gi|18027752|gb|AAL55837.1|AF318330_1 unknown [Homo sapiens]
          Length = 175

 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 35/120 (29%), Gaps = 10/120 (8%)

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
           GIT + ++    F     E       +    + H    D   +     R           
Sbjct: 12  GITRQHMRKAVPFQVAQKEILKLL--KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPN 69

Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180
             +       H  +R  L  L  +     I +     H ++ D+    ++Y +++    +
Sbjct: 70  FLSEPG---LHTRARVSLKDLALQLLHKKIQVGQHG-HSSVEDATTAMELY-RLVEVQWE 124


>gi|317147888|ref|XP_001822359.2| CAF1 family ribonuclease [Aspergillus oryzae RIB40]
          Length = 561

 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 25/119 (21%)

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII---------DTLSIAR 131
            +            + HN   DV ++         D L+  + I         DT  +A 
Sbjct: 312 EKLQQRLRTHRPVLVGHNLFTDVVYLYRCFFGPLPDKLEEFQAIVHHMFPILMDTKYMAT 371

Query: 132 RKHPS--SRNDL----NSLC----------KRYGITISHRSKHGALLDSHLLSDVYIKM 174
               S   ++ L    ++L           +++    S R  H A  DS L + ++IK+
Sbjct: 372 HDCGSITPKSSLSEINDNLLHIKTPKISVHEQHSKYNSQRIDHEAGYDSLLTAQIFIKL 430


>gi|14581470|gb|AAK38347.1| prion interactor PINT1 [Mus musculus]
 gi|123121716|emb|CAM27526.1| prion protein interacting protein 1 [Mus musculus]
          Length = 125

 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 14/35 (40%)

Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91
          P   +L GI    +  +PS   +     ++  ++ 
Sbjct: 6  PFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEG 40


>gi|195446444|ref|XP_002070783.1| GK10841 [Drosophila willistoni]
 gi|194166868|gb|EDW81769.1| GK10841 [Drosophila willistoni]
          Length = 2251

 Score = 36.7 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 71/208 (34%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT-FQVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 266 LAFDIETTKLPLKFPDAQTDQIMMISYMIDGQGYLITNREIISSNVEDFEYTPKPEFEG- 324

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGFINAELQ--------- 111
           H I    + ++ +   +  +F+D   E +    + +N   FD  F+              
Sbjct: 325 HFI----IFNEENEMQLLQKFFDHIMEVRPHIVVTYNGDFFDWPFVETRAAVYDLDMKQE 380

Query: 112 ------RINKDPLDPSRIIDTLSIARR--KHPSSRNDLNSLCK---RYG-ITISHRSKHG 159
                 R       PS  +D L   +R    P     L ++ K   RY  + +       
Sbjct: 381 IGFSKVRDGNYLSRPSIHMDCLCWVKRDSYLPVGSQGLKAVAKAKLRYDPVELDPEDMCR 440

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 441 MAVEQPQVLSNYSVSDAVATYYLYMKYV 468


>gi|47218929|emb|CAF98127.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 270

 Score = 36.7 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 43/141 (30%), Gaps = 26/141 (18%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIAHNAK 100
               + P             GIT   L   P   +   +  +        +A  + H+  
Sbjct: 140 LDELVKPQNHILDYLTC-FSGITAAMLS--PVTTTLRDVQVQLRSLL-PSDAVLVGHSLN 195

Query: 101 FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCK---RYGITISHRSK 157
            D+  +           L    ++DT  + R +    R  L  L +   +  I    R  
Sbjct: 196 NDLKALK----------LIHRHVLDTSLLYRGQC-GQRFKLKVLAQVVLKRKIQTDDRKG 244

Query: 158 H----GALLDSHLLSDVYIKM 174
           H     AL  +  L+  +I+M
Sbjct: 245 HDPTEDALA-ALELAQYFIQM 264


>gi|291164801|gb|ADD80831.1| oligoribonuclease [Rhodococcus phage ReqiDocB7]
          Length = 207

 Score = 36.7 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 9  KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV 46
           I+ D+ETTGL      I+E+G        +    FQ 
Sbjct: 6  FILLDLETTGLKPSEGHILELGMALYSPQLEMIDAFQS 43


>gi|211956451|ref|YP_002302517.1| DNAP [Bacillus phage AP50]
 gi|171706095|gb|ACB54904.1| DNAP [Bacillus phage AP50]
          Length = 731

 Score = 36.7 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 75  SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPSRIIDTLSI 129
           +F  I   F  + + +   ++ HN  FD+  I   L      R  K       ++   S 
Sbjct: 45  TFDEILDLFEQYKDYECHVYV-HNLDFDLAKIATTLFKRDRVRFAKSIFINGNVVTLHSD 103

Query: 130 ARRKHPSSR---NDLNSLCKRYGIT 151
           +   H S R     L  LCK +G+T
Sbjct: 104 SMILHDSLRLLPGSLEKLCKDFGLT 128


>gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 917

 Score = 36.7 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 79/248 (31%), Gaps = 61/248 (24%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    R++  G    ++  K       ++ P G       ++L        
Sbjct: 341 AFDTETTSLDYMEARVV--GVSFAIEPGK-----AAYV-PFGHDYLGAPVQLT------- 385

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
                 + +  +      +     +  N K+D   +      +N          DT+  +
Sbjct: 386 -----EAVVLGKLKPLLEDPARLKVGQNLKYDRNVL------LNHGIELQGIAYDTMLES 434

Query: 131 RRKHPS-SRNDLNSLCKRY----------------------GITISHRSKHGALLDSHLL 167
              + + SR+D++SL +RY                       I +   + + A  D+ + 
Sbjct: 435 YVLNSTASRHDMDSLARRYLNAETISFEEIAGKGVKQLTFNQIELEQAAPY-AAEDADIT 493

Query: 168 SDVYIKMMVG----------GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
             ++  +              S+I         R  +      P + L ++ + +  R+ 
Sbjct: 494 LRLHQALWGKLSAEPGLAKVFSEIELPLLPVLARMERLGTTIEPKL-LHQQSQEIEVRLA 552

Query: 218 KEELDEHD 225
           + E   H+
Sbjct: 553 ELEKQAHE 560


>gi|257483793|ref|ZP_05637834.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 81

 Score = 36.7 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 9/75 (12%)

Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKR----DKP-LFTRITKEELDEHDKTIQTLG 232
           G Q +     N        + +    S ++R     KP    R ++ EL EH+  + T+ 
Sbjct: 1   GGQTSLSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIA 60

Query: 233 KN----AIWDRYISS 243
           K     A+W + + +
Sbjct: 61  KASGAPALWVQMLEA 75


>gi|194745839|ref|XP_001955392.1| GF18739 [Drosophila ananassae]
 gi|190628429|gb|EDV43953.1| GF18739 [Drosophila ananassae]
          Length = 187

 Score = 36.7 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 58/165 (35%), Gaps = 26/165 (15%)

Query: 13  DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR----KNSPEALKLH---GI 65
           D+E TGLD + D+I+E+  V              F   + +      +   +K H   G+
Sbjct: 18  DLEMTGLDFEKDKILELACVITDKDLNVKSEGPCFAINHPQEVYDNMNEWCMKHHYESGL 77

Query: 66  TD----EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
            D      +K K +   + S       E+      ++   D  F+   +   N D     
Sbjct: 78  VDRCKNSQVKPKQAEELMLSYLKKNIPERKCPLGGNSVYMDRLFLRKFMP--NVDEYLHY 135

Query: 122 RIIDTL---SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           RI+D      +A+R +P   +           T   +  H +L D
Sbjct: 136 RIVDVSIIKELAKRWYPDVASG----------TPQKKLAHRSLDD 170


>gi|88704503|ref|ZP_01102217.1| oligoribonuclease [Congregibacter litoralis KT71]
 gi|88701554|gb|EAQ98659.1| oligoribonuclease [Congregibacter litoralis KT71]
          Length = 188

 Score = 36.7 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 5  NKMRKIVFDIETTGLDSKNDRIIEIGAV 32
          ++   I  D+E TGLD   DR+IEI  +
Sbjct: 7  DERNLIWVDMEMTGLDPDGDRVIEIATI 34


>gi|225626350|ref|YP_002727846.1| hypothetical protein PPphikF77_gp27 [Pseudomonas phage phikF77]
 gi|225594859|emb|CAX63144.1| hypothetical protein [Pseudomonas phage phikF77]
          Length = 348

 Score = 36.7 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%)

Query: 82  EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDL 141
                 +E +   + +  +FDV  INA        P  P ++IDTL IA+++   +   L
Sbjct: 159 ALHKLLDEADIIIVQNGKRFDVPKINARFFLNKMPPPRPFKVIDTLIIAKQQFAFTSRKL 218

Query: 142 NSLCKRY 148
             +  + 
Sbjct: 219 EYMTHKA 225


>gi|154173776|ref|YP_001407693.1| polysaccharide biosynthesis protein [Campylobacter curvus 525.92]
 gi|112803622|gb|EAU00966.1| polysaccharide biosynthesis protein [Campylobacter curvus 525.92]
          Length = 343

 Score = 36.7 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 24/105 (22%)

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRIN------KDPLDPSR 122
           L+   +   I ++F  F NE N   ++ N + FD+  I     R N       +  +   
Sbjct: 77  LEGA-NEQEILAKFIKFINEYNPRLVSFNGRGFDLPMIMVRAMRYNLSVEAYFETENREL 135

Query: 123 IIDTLSIARRKHPSSRN----------------DLNSLCKRYGIT 151
             +     R ++    +                 L++LC    + 
Sbjct: 136 NKNKWENYRSRYSGRFHLDLLDHISDFGSVRGLKLDTLCASLNLP 180


>gi|107026837|ref|YP_624348.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
 gi|116691969|ref|YP_837502.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
 gi|170736037|ref|YP_001777297.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
 gi|105896211|gb|ABF79375.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
 gi|116649969|gb|ABK10609.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
 gi|169818225|gb|ACA92807.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
          Length = 917

 Score = 36.7 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    R++ +                  + P      P A        +  
Sbjct: 343 AFDTETTALDPMLARLVGL---------------SFSVEPGKAAYLPVA----HRGPDM- 382

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++     + +    +    + + +  + K+D   +       N D        DTL  +
Sbjct: 383 PEQLPLDEVLARLKPWLESADRKKVGQHLKYDAQVL------ANYDIALNGIEHDTLLES 436

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 437 YVVESHRTHDMDSLALRHLGV 457


>gi|322497079|emb|CBZ32150.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 929

 Score = 36.7 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 29/179 (16%)

Query: 8   RKIVFDIETT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + +  D E     G +S   R   I      D    N    + + P  R       +  G
Sbjct: 448 KVVALDCEMVEVEGGESALARATLI------DVLTGNVVLDLLVKPRQRITDYR-TRFSG 500

Query: 65  ITDEFLKDKPSFSSIFS--EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           I    L   P  +++           +     + H+ + D               +    
Sbjct: 501 IDAATL--APVSTTLADCQHALQRIVDSQTFVVGHSLENDFKACKC---------IPNCY 549

Query: 123 IIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-IKMMVG 177
           ++DT       HP+    +N L  L +RY         H + +D+ + +++  +K++ G
Sbjct: 550 VLDT--TWLFPHPAGLPYKNALRFLAQRYLQRRIQHGSHDSAIDALVSAELTQLKLING 606


>gi|255638796|gb|ACU19702.1| unknown [Glycine max]
          Length = 309

 Score = 36.7 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 10/72 (13%)

Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162
           +  + A       D     R  DTL             L+ L +   +  +    H A  
Sbjct: 221 LNMLRAFFGNNVYDIKHMMRSCDTL----------HGGLDRLARTLNVDRAVGKCHQAGS 270

Query: 163 DSHLLSDVYIKM 174
           DS L    + KM
Sbjct: 271 DSLLTWHAFQKM 282


>gi|288559900|ref|YP_003423386.1| hypothetical protein mru_0643 [Methanobrevibacter ruminantium M1]
 gi|288542610|gb|ADC46494.1| hypothetical protein mru_0643 [Methanobrevibacter ruminantium M1]
          Length = 182

 Score = 36.7 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 63/179 (35%), Gaps = 40/179 (22%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNS---PEALKL 62
           R  V D ET    + ND ++ IG +     ++ +T+     ++ P          +++++
Sbjct: 4   RFAVIDTET----NWNDEVMSIGVLIARCKNFKRTDSR--HYILPKAEAVGGMYSKSMRV 57

Query: 63  --HGITDEFLKDKPSFSSIFSEFWDFFNEQNA-EWIAHNAKFDVGFINAELQRINKDPLD 119
             H I  +   D         +     +     +  A+NA FD   +             
Sbjct: 58  TSHEILTKHRNDA------IDDLRYLLDSNGVDDLFAYNASFDNRHLPELSD-------F 104

Query: 120 PSRIIDTLSIARRKHPSSRNDL-----NSLCKRYGITI--------SHRSKHGALLDSH 165
             R I  ++  ++ +PS  N +       L + YG+           +   H A++D+ 
Sbjct: 105 CWRDIMKVAAYKQHNPSIPNHMPCFKTGRLRRGYGVEPMLQILGIEDYCESHNAIIDAR 163


>gi|195391332|ref|XP_002054314.1| GJ24376 [Drosophila virilis]
 gi|194152400|gb|EDW67834.1| GJ24376 [Drosophila virilis]
          Length = 2259

 Score = 36.7 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 70/208 (33%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT-FQVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 269 LAFDIETTKLPLKFPDAQTDQIMMISYMIDGQGYLITNREIISSNIEDFEYTPKPEFEG- 327

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGF--------------- 105
               +  + ++ +   +  +F+D   E +    + +N   FD  F               
Sbjct: 328 ----NFIIFNEENEMQLLQKFFDHIMEVRPHIVVTYNGDFFDWPFVETRAAVYDLDMKQE 383

Query: 106 INAELQRINKDPLDPSRIIDTLSIARR--KHPSSRNDLNSLCK---RYG-ITISHRSKHG 159
           I     R       PS  +D L   +R    P     L ++ K   RY  + +       
Sbjct: 384 IGFSKMRDGIYLSRPSIHMDCLCWVKRDSYLPVGSQGLKAVAKAKLRYDPVELDPEDMCR 443

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 444 MAVEEPQVLSNYSVSDAVATYYLYMKYV 471


>gi|158345050|ref|YP_001522815.1| hypothetical protein PPLKD16_gp24 [Pseudomonas phage LKD16]
 gi|114796403|emb|CAK25959.1| hypothetical protein [Pseudomonas phage LKD16]
          Length = 348

 Score = 36.7 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 82  EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDL 141
                 +E +   + +  +FDV  INA        P  P ++IDTL IA+++   +   L
Sbjct: 159 ALHKLLDEADIIIVQNGKRFDVPKINARFFLNKMPPPRPFKVIDTLIIAKQQFAFTSRKL 218

Query: 142 N 142
            
Sbjct: 219 E 219


>gi|299473325|emb|CBN77724.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1712

 Score = 36.7 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 98  NAKFDVGFINAELQRINKDPLDPS-------RIIDTLSIARRKHPSSRNDLNSLCKRYGI 150
           NA   + F+     R     L          ++ D  +++R++H   +  L  LC R+ +
Sbjct: 340 NATMLLRFLQENCSREGGTYLLHRSEGAAHVQLYDVSALSRQRHRRWKWLLAMLCYRFAL 399

Query: 151 TISHRSK 157
            ISH ++
Sbjct: 400 RISHHTR 406


>gi|257438115|ref|ZP_05613870.1| conserved hypothetical protein [Faecalibacterium prausnitzii
           A2-165]
 gi|257199446|gb|EEU97730.1| conserved hypothetical protein [Faecalibacterium prausnitzii
           A2-165]
          Length = 186

 Score = 36.7 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            L S+  R GI +  R  H AL D+   +DV  K+
Sbjct: 2   TLESVVTRMGIPME-RPFHDALSDTLYTADVCRKL 35


>gi|167600469|ref|YP_001671968.1| hypothetical protein PPLUZ19_gp24 [Pseudomonas phage LUZ19]
 gi|161168332|emb|CAP45496.1| hypothetical protein [Pseudomonas phage LUZ19]
          Length = 348

 Score = 36.7 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%)

Query: 82  EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDL 141
                 +E +   + +  +FDV  INA        P  P ++IDTL IA+++   +   L
Sbjct: 159 ALHKLLDEADIIIVQNGKRFDVPKINARFFLNKMPPPRPFKVIDTLIIAKQQFAFTSRKL 218

Query: 142 NSLCKRY 148
             +  + 
Sbjct: 219 EYMTHKA 225


>gi|146079054|ref|XP_001463678.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134067765|emb|CAM66045.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 929

 Score = 36.7 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 29/179 (16%)

Query: 8   RKIVFDIETT---GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           + +  D E     G +S   R   I      D    N    + + P  R       +  G
Sbjct: 448 KVVALDCEMVEVEGGESALARATLI------DVLTGNVVLDLLVKPRQRITDYR-TRFSG 500

Query: 65  ITDEFLKDKPSFSSIFS--EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
           I    L   P  +++           +     + H+ + D               +    
Sbjct: 501 IDAATL--APVSTTLADCQHALQRIVDSQTFVVGHSLENDFKACKC---------IPNCY 549

Query: 123 IIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-IKMMVG 177
           ++DT       HP+    +N L  L +RY         H + +D+ + +++  +K++ G
Sbjct: 550 VLDT--TWLFPHPAGLPYKNALRFLAQRYLQRRIQHGSHDSAIDALVSAELTQLKLING 606


>gi|293395859|ref|ZP_06640141.1| exodeoxyribonuclease VIII [Serratia odorifera DSM 4582]
 gi|291421796|gb|EFE95043.1| exodeoxyribonuclease VIII [Serratia odorifera DSM 4582]
          Length = 189

 Score = 36.7 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 44/184 (23%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFL----CPNGRKNS---- 56
           M  ++ DIET  LD K   +I + A    D    +    F+  +       GR  S    
Sbjct: 1   MHHLMLDIET--LDIKPSAVILVVAGVFFDPRTGQLGAEFETAVSSQKAQPGRTISLDTV 58

Query: 57  -------PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI---AHNAKFDVGFI 106
                   EA KL            S   + + F  F +  +++ +    +  +FD   +
Sbjct: 59  AWWARQSDEARKL------AFAGSDSLKRVLTSFSRFIHINSSDSVKVWGNGKEFDCAIL 112

Query: 107 NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS-----HRSKHGAL 161
               Q++  D   P +  DT  +             +L + +G           + H AL
Sbjct: 113 EHAYQQL--DMPCPWKFWDTQDVRTVI---------TLAELHGFNPKKDRPFEGTPHRAL 161

Query: 162 LDSH 165
            D+ 
Sbjct: 162 DDAK 165


>gi|325680390|ref|ZP_08159943.1| hypothetical protein CUS_4596 [Ruminococcus albus 8]
 gi|324107913|gb|EGC02176.1| hypothetical protein CUS_4596 [Ruminococcus albus 8]
          Length = 69

 Score = 36.7 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 46 VFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
            + P          +L GI  E +K  P+F+ ++ +     N+     +A
Sbjct: 21 SLVDPETH-FDHFNTQLTGIDAERVKGAPNFAQLWKKIEPIVNKG--ILVA 68


>gi|259908733|ref|YP_002649089.1| Endodeoxyribonuclease [Erwinia pyrifoliae Ep1/96]
 gi|224964355|emb|CAX55864.1| Endodeoxyribonuclease [Erwinia pyrifoliae Ep1/96]
 gi|283478705|emb|CAY74621.1| hypothetical protein EPYR_02241 [Erwinia pyrifoliae DSM 12163]
          Length = 189

 Score = 36.7 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 60/185 (32%), Gaps = 44/185 (23%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLC----------PNGRKN 55
           M  ++ D+ET G       I+ IGAV      S+    F V +           P+G   
Sbjct: 1   MNHLMLDLETMGTKPDTP-IVSIGAVFFDPQSSELGEEFYVAVNLTSAMEQGAIPDGDTI 59

Query: 56  ------SPEA-LKLHGITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDV 103
                 SPEA   +   +D  LK     +   SE   F N      +      + A FD 
Sbjct: 60  IWWLKQSPEARAAIC--SDAALK----ITDALSELSHFINRHANNTKYLNVWGNGANFDN 113

Query: 104 GFINAELQRINKD-PLDPSRIIDT---LSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
             +    +R  +  P       D    +++ R      + D         +      +H 
Sbjct: 114 VIVRGAFERAGQSCPWQFWNDHDVRTIVTLGREIGFDPKRD---------MPFDGE-RHN 163

Query: 160 ALLDS 164
           AL D+
Sbjct: 164 ALADA 168


>gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 943

 Score = 36.7 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 28/148 (18%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +         D ETT LD+    ++ I                + + P      P A 
Sbjct: 361 MKKIEAAELTAVDTETTSLDALAAELVGI---------------SLSVKPGEACYIPVAH 405

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           + +G      + + S   +      +    +   +  N K+D+          N D    
Sbjct: 406 R-NG------EAQLSRELVLKRMKSWLESSSHLKVGQNLKYDIHIF------ANYDIHLE 452

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRY 148
               DTL  +        ++++SL +R+
Sbjct: 453 GIAFDTLLESYVLESHLPHNMDSLAERH 480


>gi|254248787|ref|ZP_04942107.1| DNA polymerase A [Burkholderia cenocepacia PC184]
 gi|124875288|gb|EAY65278.1| DNA polymerase A [Burkholderia cenocepacia PC184]
          Length = 920

 Score = 36.7 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    R++ +                  + P      P A        +  
Sbjct: 346 AFDTETTALDPMLARLVGL---------------SFSVEPGKAAYLPVA----HRGPDM- 385

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++     + +    +    + + +  + K+D   +       N D        DTL  +
Sbjct: 386 PEQLPLDEVLARLKPWLESADRKKVGQHLKYDAQVL------ANYDIALNGIEHDTLLES 439

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 440 YVVESHRTHDMDSLALRHLGV 460


>gi|114658752|ref|XP_001164961.1| PREDICTED: similar to HEM45 isoform 2 [Pan troglodytes]
          Length = 161

 Score = 36.7 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 53/164 (32%), Gaps = 29/164 (17%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E  GL    +  +   ++  +  +     +  F+ P G        ++ G+T + 
Sbjct: 8   VAMDCEMVGLGPHRESGLARCSLVNIHGAVL---YDKFIRPEGEITDYR-TRVSGVTPQH 63

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-LS 128
           +     F+ +     +   E  + +  ++   D               LD  R +   + 
Sbjct: 64  MVGATPFA-VAR--LEALKEDMSGYTIYDTSTDRLLWREA-------KLDHCRRVSLRVL 113

Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
             R  H S +N L       G        H ++ D+    ++Y 
Sbjct: 114 SERLLHKSIQNSL------LG--------HSSVEDARATMELYQ 143


>gi|297617520|ref|YP_003702679.1| hypothetical protein Slip_1351 [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145357|gb|ADI02114.1| hypothetical protein Slip_1351 [Syntrophothermus lipocalidus DSM
           12680]
          Length = 172

 Score = 36.7 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 71/185 (38%), Gaps = 28/185 (15%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           M+    D ET GL      +I +GAV   D      TFQ  +  +    + E +K + + 
Sbjct: 1   MKYFFVDAETDGL---YGPVIAVGAVVYDDGWTELGTFQGAVDLDNYIMTEEWVKQN-VL 56

Query: 67  DEFLKDKP---SFSSIFSEFWDFF--NEQNAEW---IAHNAK---FDVGFINAELQRINK 115
               +  P   S S +   FW F+  + +       +A+  +   F    +  E +R  +
Sbjct: 57  PHMKQIAPRYESESELLDAFWGFWITHREGCLCIADVAYPVEMSLFKKCVLKNEQERRFQ 116

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS--KHGALLDSHLLSDVYIK 173
            P  P   + T    +   P        L  R G  +S  +  +H  L D+ L +  + +
Sbjct: 117 GP-YPLLDLSTALYVKGIDP--------LIDR-GALVSGEAFTRHNPLDDARLAAKCW-R 165

Query: 174 MMVGG 178
           ++V G
Sbjct: 166 LVVNG 170


>gi|296537397|ref|ZP_06899246.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957]
 gi|296262276|gb|EFH09052.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957]
          Length = 217

 Score = 36.7 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 37/151 (24%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET GLD + DR+  +                     +  +  PE+L   G     
Sbjct: 29  VAIDTETMGLDPRRDRLCLVQLSAGDG------------NAHCVQIIPESLGGRG----- 71

Query: 70  LKDKPSFSSIF--SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             D P+  ++    +    F         H A+FDV  + A L       ++ + +  T 
Sbjct: 72  -ADCPNLKALLTRPDVVKLF---------HFARFDVAILRAAL------GIECAPVRCTK 115

Query: 128 SIARRKHPSS-RNDLNSLCKR-YGITISHRS 156
             A+     + R+ L  LC+   G+ IS + 
Sbjct: 116 IAAKLVRTFTDRHGLKDLCRELLGVEISKQQ 146


>gi|77456284|ref|YP_345789.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
 gi|77380287|gb|ABA71800.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
          Length = 935

 Score = 36.7 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 55/141 (39%), Gaps = 23/141 (16%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D++  +++ +      + +        ++                     +
Sbjct: 351 AFDTETTGIDAQQAQLVGLSFAVQANEAAYIPLTHSYI--------------------GV 390

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII--DTLS 128
            ++    ++         + N   +  +AKFD+  +       +++     R I  DT+ 
Sbjct: 391 PEQLDRDTVLRALKPILEDPNKLKVGQHAKFDMNILANCAIGGDQNEGITVRGIAFDTML 450

Query: 129 IARRKHPSS-RNDLNSLCKRY 148
            +   + ++ R+D++SL ++Y
Sbjct: 451 ESYVLNSTATRHDMDSLAQKY 471


>gi|226195875|ref|ZP_03791462.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
 gi|225932360|gb|EEH28360.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
          Length = 876

 Score = 36.7 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    +I+ +                  + P      P A        +  
Sbjct: 302 AFDTETTSLDPMRAQIVGL---------------SFSVEPGHAAYVPVA----HRGPDMP 342

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P    + ++   +  +   + +  + K+D   +      +N          DTL  +
Sbjct: 343 AQLPR-DEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE------HDTLLES 395

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 396 YVLESHRTHDMDSLALRHLGV 416


>gi|119488542|ref|XP_001262721.1| RNA exonuclease, putative [Neosartorya fischeri NRRL 181]
 gi|119410879|gb|EAW20824.1| RNA exonuclease, putative [Neosartorya fischeri NRRL 181]
          Length = 426

 Score = 36.7 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 25/176 (14%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS---PEALKLHG 64
           R +  D E   ++     + +I AV++L          +++ P+        P +     
Sbjct: 213 RAVALDCEMVEVEGGCAEVAQICAVDILAGEVIVD---IYVVPSKMVTDWRTPWSGMSQK 269

Query: 65  ITDEFLKDKPS---FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121
           + +E  +   +   +       W   +  +   +  + + D+  +      I        
Sbjct: 270 LLEEMKEAGKTVNGWEEARKALWAHIDP-DTILVGQSLQHDLDIMRMVHLNI-------- 320

Query: 122 RIIDTLSIARRKHP---SSRNDLNSLCKR-YGITISH-RSKHGALLDSHLLSDVYI 172
             IDT  ++R            L  LCK+     I   R  H  L D+    +V +
Sbjct: 321 --IDTAILSREAVAKDCKQNWGLKRLCKQMLDRDIQQSRRGHNCLEDTMATREVVL 374


>gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomonas fluorescens]
          Length = 939

 Score = 36.7 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 55/141 (39%), Gaps = 23/141 (16%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETTG+D++  +++ +      + +        ++                     +
Sbjct: 355 AFDTETTGIDAQQAQLVGLSFAVQANEAAYIPLTHSYI--------------------GV 394

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII--DTLS 128
            ++    ++         + N   +  +AKFD+  +       +++     R I  DT+ 
Sbjct: 395 PEQLDRDTVLRALKPILEDPNKLKVGQHAKFDMNILANCAIGGDQNEGITVRGIAFDTML 454

Query: 129 IARRKHPSS-RNDLNSLCKRY 148
            +   + ++ R+D++SL ++Y
Sbjct: 455 ESYVLNSTATRHDMDSLAQKY 475


>gi|302561447|ref|ZP_07313789.1| ribosome-associated GTPase EngA [Streptomyces griseoflavus Tu4000]
 gi|302479065|gb|EFL42158.1| ribosome-associated GTPase EngA [Streptomyces griseoflavus Tu4000]
          Length = 496

 Score = 36.7 bits (84), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 153 SHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
           +H   HGAL D+      + + M   ++  F  +  E          +P ++++ R 
Sbjct: 16  AHEHGHGALGDAE-----FAEFMELAAEEGFDLEDVEGAIEAAGHGPLPVLAVVGRP 67


>gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 922

 Score = 36.7 bits (84), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 37/142 (26%), Gaps = 30/142 (21%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D ETT LD    RI+ I                  + P      P A    G     +
Sbjct: 344 ALDTETTSLDPLAARIVGISLA---------------VAPGEAAYLPLAHDYPG-----V 383

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +     + +    +        I  + K+D   +       N          DTL  +
Sbjct: 384 PAQLPCDEVLARLKSWLESPGHAKIGQHLKYDQHVL------ANHGIALAGVRHDTLLQS 437

Query: 131 RRKHPSSR----NDLNSLCKRY 148
                       +DL  L  R+
Sbjct: 438 YVLESGKDGVRGHDLGQLATRH 459


>gi|167899173|ref|ZP_02486574.1| DNA polymerase I [Burkholderia pseudomallei 7894]
          Length = 625

 Score = 36.7 bits (84), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    +I+ +                  + P      P A        +  
Sbjct: 51  AFDTETTSLDPMRAQIVGL---------------SFSVEPGHAAYVPVA----HRGPDMP 91

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P    + ++   +  +   + +  + K+D   +      +N          DTL  +
Sbjct: 92  AQLPR-DEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE------HDTLLES 144

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 145 YVLESHRTHDMDSLALRHLGV 165


>gi|163782354|ref|ZP_02177352.1| hypothetical protein HG1285_06190 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882387|gb|EDP75893.1| hypothetical protein HG1285_06190 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 246

 Score = 36.7 bits (84), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 28/128 (21%)

Query: 75  SFSSIFSEFWDFFNEQ-NAEWIAHNAK-FDVGFINAELQRIN--------KDPLDPSRII 124
           +   I ++FW    E+    +++ N + FD  F+      +          +  +    +
Sbjct: 109 AERRILTKFWKKAKEKEGYRFVSFNGRGFDSVFLMLRSFVLGVKVSRQFIGNRYEYRNHL 168

Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSK--HG-------------ALL---DSHL 166
           D L +        +  L  +C+R GI         H              AL    D+  
Sbjct: 169 DLLDLLSFHGQGRKYSLEFVCRRLGIPSPKEDMDGHDVKEYFAKGRYRDIALYNLKDTIA 228

Query: 167 LSDVYIKM 174
            + +Y + 
Sbjct: 229 TARIYERF 236


>gi|318057115|ref|ZP_07975838.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318075788|ref|ZP_07983120.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
          Length = 239

 Score = 36.7 bits (84), Expect = 3.1,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 17/160 (10%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD----- 72
           G  +  DR++   AV + D++     F+ +L   G      A    G++++ ++      
Sbjct: 17  GPRTAKDRVLS-AAVVVQDHADAPPRFERWLVCPGVPVPRSARAALGLSEDHIRRNGRWP 75

Query: 73  KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI------NKDPLDPSRIID- 125
            P    +     +         +  +A   +  ++ EL+R       ++    P R++D 
Sbjct: 76  APVMDEVARSLHEH-ALTGRPLVVLDAPATLALLDRELRRHRATSLTDRLGPKPLRVLDP 134

Query: 126 -TLSIARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALL 162
             L     +      +L SLC  Y +           AL 
Sbjct: 135 GLLDTQLDRFRKGSRELESLCSVYRVPGGDPRDPAARALA 174


>gi|115491839|ref|XP_001210547.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114197407|gb|EAU39107.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 1307

 Score = 36.7 bits (84), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154
           IAHN         A L  + K         +  + AR  +P       +L +R G    H
Sbjct: 130 IAHNNIHIYTAGFATLSHLLKRLFIEELHTEVAAHARSLYP-------TLLERLG---DH 179

Query: 155 RSKHGALLDSHLLSDVY 171
           + +  AL  +   +D++
Sbjct: 180 KERVRALA-AQAFADLW 195


>gi|226314635|ref|YP_002774531.1| hypothetical protein BBR47_50500 [Brevibacillus brevis NBRC 100599]
 gi|226097585|dbj|BAH46027.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 458

 Score = 36.7 bits (84), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 43/144 (29%), Gaps = 32/144 (22%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           + FD ETTGL       I +      +             P+         ++  +   F
Sbjct: 124 LFFDTETTGLSGGAGNAIFLLGYSRFEGEHVVVRQHFLPGPH--------AEVT-LYQSF 174

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFI--NAELQRINKDPLDPSRIIDT 126
           L+                 ++++  +  N   FD   +     L R     L      D 
Sbjct: 175 LEQA---------------QKSSHLVTFNGKSFDWPQVRTRHTLVRDQVPALPTFGHFDL 219

Query: 127 LSIARRKHPSSRNDLNSLCKRYGI 150
           L  ARR     R +L S   R GI
Sbjct: 220 LHGARRLW---RAELESC--RLGI 238


>gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 917

 Score = 36.7 bits (84), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 26/146 (17%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + N       D ETT L+    +++ I                    P      P A + 
Sbjct: 335 KINAAELTAIDTETTSLEPMQAQLVGISLCCE---------------PGVAAYIPVAHRY 379

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                + +  + S +S+  +   +  + +   +  N K+D           N        
Sbjct: 380 -----QDVPLQLSRASVLEKLRSWLEDDSKPKVGQNLKYDSHIF------ANHGVTLRGI 428

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
           + DTL  +        +D++SL  R+
Sbjct: 429 VHDTLLQSYVFESHRSHDMDSLALRH 454


>gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 911

 Score = 36.7 bits (84), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 26/146 (17%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + N       D ETT L+    +++ I                    P      P A + 
Sbjct: 329 KINAAELTAIDTETTSLEPMQAQLVGISLCCE---------------PGVAAYIPVAHRY 373

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                + +  + S +S+  +   +  + +   +  N K+D           N        
Sbjct: 374 -----QDVPLQLSRASVLEKLRSWLEDDSKPKVGQNLKYDSHIF------ANHGVTLRGI 422

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY 148
           + DTL  +        +D++SL  R+
Sbjct: 423 VHDTLLQSYVFESHRSHDMDSLALRH 448


>gi|15669075|ref|NP_247880.1| DNA polymerase B1 [Methanocaldococcus jannaschii DSM 2661]
 gi|3915679|sp|Q58295|DPOL_METJA RecName: Full=DNA polymerase; Contains: RecName: Full=Mja pol-1
           intein; Contains: RecName: Full=Mja pol-2 intein
 gi|2826345|gb|AAB98889.1| DNA polymerase B1 [Methanocaldococcus jannaschii DSM 2661]
          Length = 1634

 Score = 36.7 bits (84), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 57/176 (32%), Gaps = 46/176 (26%)

Query: 2   IRKNKMRKIVFDIET----TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57
           I   K++ + FD+E     T  + + D I+ + +    +  K   T++ F  PN      
Sbjct: 151 IEIPKLKSVAFDMEVYNRDTEPNPERDPIL-MASFWDENGGKVI-TYKEFNHPNI----- 203

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116
                     E +K+      +  +  +   E +  +  +   FD  ++ A  +    D 
Sbjct: 204 ----------EVVKN---EKELIKKIIETLKEYDVIYTYNGDNFDFPYLKARAKIYGIDI 250

Query: 117 --------------------PLDPSRIIDTLSIARRKHPSSRNDLNS-LCKRYGIT 151
                                +     ID   I+RR    ++  L   +   +GI 
Sbjct: 251 NLGKDGEELKIKRGGMEYRSYIPGRVHIDLYPISRRLLKLTKYTLEDVVYNLFGIE 306


>gi|238025884|ref|YP_002910115.1| hypothetical protein bglu_1g02100 [Burkholderia glumae BGR1]
 gi|237875078|gb|ACR27411.1| Hypothetical protein bglu_1g02100 [Burkholderia glumae BGR1]
          Length = 204

 Score = 36.7 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 61/182 (33%), Gaps = 21/182 (11%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNS---------P 57
            +  D+E  G       ++   +    +  +   TF   L   PN   +          P
Sbjct: 6   YVSTDVEADGPIPGPHSMLSFASAAYTEDKQLIATFSANLETLPNAAPHPVQEAWWKTQP 65

Query: 58  EALKLHGITDEFLKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NK 115
           EA          L+  P  + +   E+ +    +   ++A  A FD  F+   + R   +
Sbjct: 66  EAWAAC---RRDLQ-APDAALVAYVEWVEALPGKP-VFVAMPAGFDFTFMFWYMMRFAGR 120

Query: 116 DPLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
            P   S   I TL+ A    P  +     L K +     H   H AL D+     ++  M
Sbjct: 121 CPFSWSALDIKTLAFALTGLPYRKAIKPRLPKHW--FDDHPHTHVALDDAIEQGALFCNM 178

Query: 175 MV 176
           + 
Sbjct: 179 LA 180


>gi|71031200|ref|XP_765242.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352198|gb|EAN32959.1| hypothetical protein, conserved [Theileria parva]
          Length = 624

 Score = 36.7 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 35/132 (26%)

Query: 80  FSEFWDFFNEQNAEWIAHNAKFDVGFINAEL--------QRINKDPLDPSRII-DTLSIA 130
               +D  ++ N   + HN  +D+  I            +   K  +     I DT  I+
Sbjct: 354 LRTLFDTVSKNNKILVGHNCFYDILHIYQTFYGDLPENVEDFKKKWVQVFPTIFDTKYIS 413

Query: 131 RRKHPSSRND-LNSLCKRY-------------------------GITISHRSKHGALLDS 164
              H  + +  L SL   +                          +      +H A  DS
Sbjct: 414 EYYHQFTPHTTLKSLYNSFLPNQNGFNRVKISSLGKSGMVSGYGDVINEGEKEHEAGYDS 473

Query: 165 HLLSDVYIKMMV 176
            + + V+I+ + 
Sbjct: 474 LMTAIVFIRQLE 485


>gi|260793019|ref|XP_002591511.1| hypothetical protein BRAFLDRAFT_178063 [Branchiostoma floridae]
 gi|229276717|gb|EEN47522.1| hypothetical protein BRAFLDRAFT_178063 [Branchiostoma floridae]
          Length = 136

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 13/129 (10%)

Query: 44  FQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103
           +  F+ P  R       +  G++   L+D  +      E       ++A  + H+ + D+
Sbjct: 16  YNSFVKP-RRPVKDYMTQFSGVSAADLQDVTTRLEHVQETLQELLPEDAILVGHSLENDL 74

Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLC-KRYGITI-SHRSKHGAL 161
             +      I          IDT  +        +  L +L  K  G  I +    H ++
Sbjct: 75  QALKVVHPHI----------IDTSLLFNHATWRFKPKLRTLTSKLLGKEIQTGTDGHDSV 124

Query: 162 LDSHLLSDV 170
            D+     +
Sbjct: 125 EDAIAAMQL 133


>gi|222824245|ref|YP_002575819.1| polysaccharide biosynthesis protein [Campylobacter lari RM2100]
 gi|222539467|gb|ACM64568.1| conserved hypothetical protein, putative polysaccharide
           biosynthesis protein [Campylobacter lari RM2100]
          Length = 259

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 39/109 (35%), Gaps = 22/109 (20%)

Query: 59  ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP 117
            +K++ I  E      +   +  EF++F ++     ++ N   +D+  +     + N + 
Sbjct: 70  FIKVNKIKGE------NEKQMLEEFFNFIDKHQPRLVSFNGKSYDMPLLVIRALKYNINA 123

Query: 118 LDPSRIIDTLSIARRKHPSSRN---------------DLNSLCKRYGIT 151
                  D  +  + K   +++                L++LC   G+ 
Sbjct: 124 SAYLDASDKWNNYKSKFIENKHCDLLESLGSFGQKGLKLDTLCAMAGLP 172


>gi|220930425|ref|YP_002507334.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
 gi|220000753|gb|ACL77354.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
          Length = 652

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 24/144 (16%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           + +  DIET      +  +I+ G    ++       F++ L      + P       IT 
Sbjct: 3   KILSIDIET----YSSVDLIKCGVYRYVEAPD----FEILLFAYAYDDEP-------ITV 47

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
             L D   F  +  +      + +    A+NA F+   I     +    P+ P +   T 
Sbjct: 48  IDLAD---FEELPEQVTKDLTDPDVIKAAYNANFERTCIAKFYNK----PMPPEQWRCTS 100

Query: 128 SIARRKHPSSRNDLNSLCKRYGIT 151
             A         +L+ + K  G+ 
Sbjct: 101 VHALTL--GLPGNLDGVAKVLGLD 122


>gi|109947420|ref|YP_664648.1| hypothetical protein Hac_0867 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714641|emb|CAJ99649.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 270

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 40/131 (30%), Gaps = 25/131 (19%)

Query: 24  DRIIEIGAVELLDYS---KTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80
             +I I AV   DY    K     Q      G                      S   + 
Sbjct: 52  HEVISIAAVIGDDYGKFIKVGNFGQKHENKEGFI--------------------SEKELL 91

Query: 81  SEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN 139
            +F+ +FNE+    I+ N + FD+  +  +  + N          +     R ++    +
Sbjct: 92  EDFFKYFNEKQPRLISFNGRGFDMPLLTLKALKYNLTLDAFYNQENKWENYRHRYSEQFH 151

Query: 140 -DLNSLCKRYG 149
            DL      YG
Sbjct: 152 LDLMDSLSHYG 162


>gi|28377781|ref|NP_784673.1| hypothetical protein lp_0960 [Lactobacillus plantarum WCFS1]
 gi|28270614|emb|CAD63520.1| unknown [Lactobacillus plantarum WCFS1]
          Length = 412

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 58/212 (27%), Gaps = 21/212 (9%)

Query: 23  NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL--HGITDEFLKDKPSFSSIF 80
              I ++ A+    +++T   F  +          +   L   G+T    + +    +I 
Sbjct: 160 RASIFQLSAIGFSHHTQTAPFFNRYFDDPNFLPDKKLAGLSATGLTTVAYEAQGDPLTIL 219

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--------PSRIIDTLSIARR 132
             F     +     +  +   D+  I   L +  +            P  I D  +    
Sbjct: 220 KAFIQQVIQPQLPLVFWDQTQDMKHIRLLLTQYYQQLTPTEQQLVSRPVTIFDAQAYTNT 279

Query: 133 KHPSSRND-------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185
                 +        LN L   + I+  H+  H A+ D      V +K+     Q     
Sbjct: 280 LINRGNHKVGSHDLPLNGLAALFNISNPHQ--HNAIWDVQTTELVMVKLAEVTHQTP--V 335

Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217
            T               +  ++   P     +
Sbjct: 336 ITTPPAPIALPATVPAVVPSIQTPSPTPQHAS 367


>gi|320182116|gb|EFW57020.1| DNA polymerase, phage-associated [Shigella boydii ATCC 9905]
          Length = 533

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN 142
            ++           HN+ FD   +   + R+        R  DT+  A          L 
Sbjct: 58  LYEAIAAPETLLYFHNSHFDRTVLRYAMPRL---APPVERWRDTMVQA--LAHGLPGSLG 112

Query: 143 SLCKRYGIT 151
            LC+  G+ 
Sbjct: 113 ELCEVLGVP 121


>gi|291227159|ref|XP_002733554.1| PREDICTED: DNA-directed DNA polymerase epsilon-like [Saccoglossus
           kowalevskii]
          Length = 2217

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 64/214 (29%), Gaps = 61/214 (28%)

Query: 11  VFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT--------FQVFLCPNGRKNS 56
            FDIETT L     D + D I+ I   ++   Y  TNR         F+    P      
Sbjct: 270 AFDIETTKLPLKFPDMETDSIMMISYMIDAQGYLITNREVVAEDVNDFEYTPKPEYE--G 327

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHN-AKFDVGFINAELQRIN 114
           P            + ++    S+   F +   E +   ++ +N   FD  F+ A      
Sbjct: 328 PFI----------VFNEVDEVSLLQRFIEHVLEVKPHIFVTYNGDMFDWPFVEARCNYHG 377

Query: 115 KDPLD---------------PSRIIDTLSIARR--KHPSSRNDLNSLCK---RYG-ITIS 153
            D                      +D     +R    P    +L +  K   RY  I + 
Sbjct: 378 IDMYKEIGFQKDTQGEYKSRQCIHMDAYRWVKRDSYLPVGSQNLKAASKAKLRYDPIELD 437

Query: 154 HRSKHG------------ALLDSHLLSDVYIKMM 175
                             ++ D+     +Y+K +
Sbjct: 438 PEEMCRMASEEPQVLANYSVSDAVATYYLYMKYV 471


>gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
 gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
          Length = 940

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 27/144 (18%)

Query: 6   KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65
           KM  + FD ET  LD    RI+ +      + +        ++ P          +L   
Sbjct: 361 KMDWVAFDTETDSLDLFAGRIVGVSFSIEDNRA-------AYV-PLAHNYPGAPAQL--- 409

Query: 66  TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125
                       ++ ++   +  + +   +  NAKFD   +       N        + D
Sbjct: 410 ---------DRDTVLADLKPWLEDASRTKVMQNAKFDSHML------ANHGITLRGVLFD 454

Query: 126 TLSIARRKHPSS-RNDLNSLCKRY 148
           T+  +     ++ R+D++SL  +Y
Sbjct: 455 TMLESYVLDSTATRHDMDSLAAKY 478


>gi|117929300|ref|YP_873851.1| exonuclease [Acidothermus cellulolyticus 11B]
 gi|117649763|gb|ABK53865.1| exonuclease [Acidothermus cellulolyticus 11B]
          Length = 202

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 65/198 (32%), Gaps = 35/198 (17%)

Query: 9   KIVFDIET-------TG--LDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNS 56
            +  D+ET       TG      +      G ++   +        TF V L P     +
Sbjct: 6   YVSLDVETDGPIPGPTGWGFSMLSLGACIAGVMDDTGFQPIAPDRSTFYVELQPISDDVN 65

Query: 57  PEALKLH--GIT---DEFLKDKPSFSSIFSEFWDFFNEQ------NAEWIAHNAKFDVG- 104
            EAL     G++      +      +    +F  +          +A  +   + +D G 
Sbjct: 66  AEALAACERGLSMPRSALVHHGTPPTVAMRDFVRWVEAAERDYRGSAVAVGWPSSWDFGT 125

Query: 105 FINAELQRI-NKDPLDPSRIIDTLSIARRKHPSS-----RNDLNSLCKRYGITISHRSKH 158
           ++   L R   + P    +  D   +A  +         ++ L +      +    R  H
Sbjct: 126 WVFWYLTRFAGRSPFSHGQHRDIRDLAADRLQVPIRGLTKHRLPA-----ELRTKRRHTH 180

Query: 159 GALLDSHLLSDVYIKMMV 176
            AL D+   ++++ ++M 
Sbjct: 181 NALADALEQAELFTRVMT 198


>gi|293400964|ref|ZP_06645109.1| exonuclease superfamily [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305990|gb|EFE47234.1| exonuclease superfamily [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 263

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 67/218 (30%), Gaps = 22/218 (10%)

Query: 7   MRKIVFDIETTGLDS------KNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEA 59
           M ++  D E    D+          +I  GAV        + TF   + P   R  +P  
Sbjct: 1   MIQVYIDAE---FDAVRYQKRFEQAVISFGAVACRQKQMLD-TFYTLVRPRYFRHLTPVV 56

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRINKD 116
            K+  + D+ +        +   F  +     E     +      D   +       + D
Sbjct: 57  KKMTHLKDKEILAAEPLEVVTEHFLSWLQRFGELADIQLYSCGPDDRRTLMKNCAIHHID 116

Query: 117 PL------DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170
                   D  + I      + K  S    L+ +   Y I       H AL D+  L  +
Sbjct: 117 GALFDRIQDLQKEISATVKFQNKIISPSLSLDDMKLIYDIQ--GAVDHNALNDAKDLMYI 174

Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKR 208
           + + + G +Q         +R   ++++     +   R
Sbjct: 175 HQRYLDGNAQNAQRILDIVNRKEAKQQEVRQKQNERLR 212


>gi|167915856|ref|ZP_02502947.1| DNA polymerase I [Burkholderia pseudomallei 112]
          Length = 618

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    +I+ +                  + P      P A        +  
Sbjct: 44  AFDTETTSLDPMRAQIVGL---------------SFSVEPGHAAYVPVA----HRGPDMP 84

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P    + ++   +  +   + +  + K+D   +      +N          DTL  +
Sbjct: 85  AQLPR-DEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE------HDTLLES 137

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 138 YVLESHRTHDMDSLALRHLGV 158


>gi|167743555|ref|ZP_02416329.1| DNA polymerase I [Burkholderia pseudomallei 14]
          Length = 619

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    +I+ +                  + P      P A        +  
Sbjct: 45  AFDTETTSLDPMRAQIVGL---------------SFSVEPGHAAYVPVA----HRGPDMP 85

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P    + ++   +  +   + +  + K+D   +      +N          DTL  +
Sbjct: 86  AQLPR-DEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE------HDTLLES 138

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 139 YVLESHRTHDMDSLALRHLGV 159


>gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholderia pseudomallei]
          Length = 615

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    +I+ +                  + P      P A        +  
Sbjct: 41  AFDTETTSLDPMRAQIVGL---------------SFSVEPGHAAYVPVA----HRGPDMP 81

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
              P    + ++   +  +   + +  + K+D   +      +N          DTL  +
Sbjct: 82  AQLPR-DEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE------HDTLLES 134

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 135 YVLESHRTHDMDSLALRHLGV 155


>gi|17229189|ref|NP_485737.1| hypothetical protein all1697 [Nostoc sp. PCC 7120]
 gi|17135517|dbj|BAB78063.1| all1697 [Nostoc sp. PCC 7120]
          Length = 302

 Score = 36.4 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 36/150 (24%)

Query: 67  DEFLKDKPSFSSIFSE---FWDFFNE----QNAEWIAHNAKFDVGFINAELQRINKDPLD 119
           ++   D+     +  +     DF ++     N E + HNA FDV  +  +  R       
Sbjct: 49  NDMSGDRVYLLDVLDQPDLVADFVDKIMVNTNIEKVFHNANFDVKLLGNKQAR------- 101

Query: 120 PSRIIDTLSIARR----KHPSSRNDLNSLCKRY----GI------------TISHRSKHG 159
              I  TL IA++      P     L SL K       I             +S      
Sbjct: 102 --NITCTLEIAKKIPYYLLPVQNYQLQSLAKLLCNFNNIDKQEQGSNWGQRPLSEEQIEY 159

Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189
           A LD   L+ ++ +++    + N   +T +
Sbjct: 160 AYLDCIYLAQIHRRLLELQIESNPDPETLD 189


>gi|331005310|ref|ZP_08328699.1| Oligoribonuclease [gamma proteobacterium IMCC1989]
 gi|330420886|gb|EGG95163.1| Oligoribonuclease [gamma proteobacterium IMCC1989]
          Length = 180

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 52/180 (28%), Gaps = 33/180 (18%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK---------TNRTFQVFLCPNGR 53
             ++   I  D+E TGL   +D IIEI  +                 +++ +        
Sbjct: 1   MLHEDNLIWIDLEMTGLYPNDDVIIEIATIVTDSDLNILAEGPMLAIHQSDERL-----A 55

Query: 54  KNSPEALKLHGIT--DEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106
                    HG +   E +++       +          +     +    ++   D  F+
Sbjct: 56  AMDEWNTNQHGKSGLTERVRNSNISASDAEQQTIDFLKQWVPAGKSPMSGNSICQDRRFL 115

Query: 107 NAELQRINKDPLDPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
              +  +       +  + ++  +ARR  P S               +    H AL D  
Sbjct: 116 ANYMPALENYFHYRNLDVSSVKELARRWKPESMKG-----------FTKSGAHLALDDVR 164


>gi|260599983|ref|YP_003212554.1| DNA polymerase I [Cronobacter turicensis z3032]
 gi|260219160|emb|CBA34515.1| DNA polymerase I [Cronobacter turicensis z3032]
          Length = 966

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 74/240 (30%), Gaps = 58/240 (24%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET  LD+    ++ I             +F     P      P A   H   D  
Sbjct: 390 VAVDTETDSLDNLTANLVGI-------------SFAT--EPGLAAYIPVA---HDYLDA- 430

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
             D+     +         +++   +  N KFD G +       N        + DT+  
Sbjct: 431 -PDQLPRDRVLELLKPLLEDESLVKVGQNLKFDRGILQ------NYGIELRGIVFDTMLE 483

Query: 130 ARRKHP-SSRNDLNSLCKRY----------------------GITISHRSKHGALLDSHL 166
           +      S R+D++SL  R+                       I +    ++ A  D+ +
Sbjct: 484 SYILDSVSGRHDMDSLSSRWLKHTTITFEQIAGKGKNQLTFNQIDLEQAGRY-AAEDADV 542

Query: 167 LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK----PLFTRITKEELD 222
              +++KM     Q        E      E   VP +S ++R+     P       +E+ 
Sbjct: 543 TLQLHLKMWPKLQQHKGPLNIFEHI----EMPLVPVLSRIERNGVKIDPAVLHAHSQEIA 598


>gi|207092981|ref|ZP_03240768.1| hypothetical protein HpylHP_09244 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 270

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 40/131 (30%), Gaps = 25/131 (19%)

Query: 24  DRIIEIGAVELLDYS---KTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80
             II I AV   DY    K     Q                          D  S   + 
Sbjct: 52  HEIISIAAVIGDDYGQFIKVGNFSQKHENKE--------------------DFTSEKELL 91

Query: 81  SEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN 139
            +F+ +FNE+    I+ N + FD+  +  +  + N          +     R ++    +
Sbjct: 92  EDFFKYFNEKQPRLISFNGRGFDIPLLTLKALKYNLTLDAFYNQENKWENYRARYSEQFH 151

Query: 140 -DLNSLCKRYG 149
            DL      YG
Sbjct: 152 LDLMDSLSHYG 162


>gi|195109216|ref|XP_001999183.1| GI24369 [Drosophila mojavensis]
 gi|193915777|gb|EDW14644.1| GI24369 [Drosophila mojavensis]
          Length = 2260

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 70/208 (33%), Gaps = 47/208 (22%)

Query: 10  IVFDIETTGL-----DSKNDRIIEIG-AVELLDYSKTNRT-FQVFLCPNGRKNSPEALKL 62
           + FDIETT L     D++ D+I+ I   ++   Y  TNR      +        PE    
Sbjct: 269 LAFDIETTKLPLKFPDAQTDQIMMISYMIDGQGYLITNREIISSDIEDFEYTPKPEFEG- 327

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAK-FDVGF--------------- 105
               +  + ++ +   +  +F+D   E +    + +N   FD  F               
Sbjct: 328 ----NFIIFNEENEMQLLQKFFDHIMEVRPHIVVTYNGDFFDWPFVETRAAVYDLDMKQE 383

Query: 106 INAELQRINKDPLDPSRIIDTLSIARR--KHPSSRNDLNSLCK---RYG-ITISHRSKHG 159
           I     R       P+  +D L   +R    P     L ++ K   RY  + +       
Sbjct: 384 IGFSKMRDGNYLSRPAIHMDCLCWVKRDSYLPVGSQGLKAVAKAKLRYDPVELDPEDMCR 443

Query: 160 ------------ALLDSHLLSDVYIKMM 175
                       ++ D+     +Y+K +
Sbjct: 444 MAVEQPQVLSNYSVSDAVATYYLYMKYV 471


>gi|168056660|ref|XP_001780337.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668285|gb|EDQ54896.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 255

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 63/192 (32%), Gaps = 29/192 (15%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYS--KTNRTFQVFLCPNGRKNSPEALKLHG-- 64
            +V D+E          I+E   V L++    +    F  F+ P       +A  + G  
Sbjct: 47  YLVLDLE------GRVEILEFP-VLLINAQTLEVVDRFHRFVRPVIMTEERQAEYIKGKY 99

Query: 65  ----ITDEFLKDKPSFSSIFSEFWDFFNEQN------------AEWIAHNAKFDVGFINA 108
               +   +      F+ + + F  +    +            A ++          I  
Sbjct: 100 GRWGLDRVWHDTAIPFTEVLNAFESWMESHSLYNPEDPSKLTRAAFVTCGNWDVKTKIPE 159

Query: 109 ELQRINKDPLDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167
           + +    +     +  I+   I    +      + ++ K   I ++  + H  L D+H +
Sbjct: 160 QCRDSGIELKPYFNEWINLKDIYYNFYRRRAGGMLAMLKGLNIPLTG-THHVGLDDAHNI 218

Query: 168 SDVYIKMMVGGS 179
           + +  +M+  G+
Sbjct: 219 AQILQRMLAHGA 230


>gi|296420326|ref|XP_002839726.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635920|emb|CAZ83917.1| unnamed protein product [Tuber melanosporum]
          Length = 188

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 40/136 (29%), Gaps = 13/136 (9%)

Query: 12  FDIETTGLDSKNDRIIEIGAVEL--------LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            D E TGLD   D I++I              +  +T   ++  +         +     
Sbjct: 13  IDCEMTGLDPNEDVILQICCYITDHELNLLDEEGHETVIHYEKEVLVKMDDWCQKTHSST 72

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAKFDVGFINAELQRINKDPL 118
           G+    L+   + +        +  +       A    ++  +D  F+      + +   
Sbjct: 73  GLISRVLESAVTVTQATEGLLAYIKKHVPEKGIAFLAGNSVHYDRVFLARYYPSVVEHLH 132

Query: 119 DPSRIIDTLSIARRKH 134
                + T+  A +  
Sbjct: 133 HRIIDVSTVKEAVKMW 148


>gi|289741477|gb|ADD19486.1| mRNA deadenylase subunit [Glossina morsitans morsitans]
          Length = 300

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 23/171 (13%)

Query: 25  RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT---DEFLKDKPSFSSIFS 81
           RII++G   + D  KT   +  +        S +      I    +  ++ K        
Sbjct: 89  RIIQLGLTFMDDEGKTPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGID 148

Query: 82  --EFWDFFNEQNAEWI------AHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA--- 130
             +F +         +        ++ +D G++   L   N  P D S   D L I    
Sbjct: 149 PLDFAELLMSSGIVLVDNIKWLCFHSGYDFGYLLKLLTDQNL-PADESEFFDLLHIYFPN 207

Query: 131 ----RRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               +    S +N    L  +  +  +      +H A  D+ L    + +M
Sbjct: 208 IYDIKYLMKSCKNLKGGLQEVADQLELRRVG-PQHQAGSDALLTGMAFFRM 257


>gi|254481398|ref|ZP_05094643.1| hypothetical protein GPB2148_1871 [marine gamma proteobacterium
           HTCC2148]
 gi|214038561|gb|EEB79223.1| hypothetical protein GPB2148_1871 [marine gamma proteobacterium
           HTCC2148]
          Length = 75

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
              R   P + +       RY +   H   H ALLD+   +++ I M
Sbjct: 16  RHGRIIEPGALHS-QDCRSRYNLL--HFHGHNALLDALATAELLIAM 59


>gi|325963677|ref|YP_004241583.1| oligoribonuclease (3'->5' exoribonuclease) [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469764|gb|ADX73449.1| oligoribonuclease (3'->5' exoribonuclease) [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 195

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 24/160 (15%)

Query: 17  TGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNG---RKNSPEALKLH---GITDEF 69
           TGLD KND +IE+ A V   + +       V + P+     + +     +H   G+  E 
Sbjct: 2   TGLDIKNDALIEVAALVTDSELNILGDGVDVVIKPDDAAVAQMNDFVRDMHTKSGLLKE- 60

Query: 70  LKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124
           L    + +   +   ++      + + A    ++   D  F++ ++  + +        +
Sbjct: 61  LPHGKTMAEAEAAVMEYISKWVPDPRKAPLGGNSVGTDRVFLSRDMPAVVEHLHYRVIDV 120

Query: 125 DTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
            T+  ++RR             + Y    + +  H AL D
Sbjct: 121 STIKELSRRWF----------ARAYFQAPAKKGGHRALGD 150


>gi|194333337|ref|YP_002015197.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
 gi|194311155|gb|ACF45550.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
          Length = 950

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 34/139 (24%)

Query: 11  VFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
             D ETT L++    ++ I   V+  +          +  P G K   +AL +     + 
Sbjct: 380 ALDTETTSLNTFEAELVGISISVKPQEAVFI------YCSPEGLK-PEKALSI----LKP 428

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + + P+                      N K+D+  +    +             DT+  
Sbjct: 429 VLENPAIEK----------------WGQNLKYDILVL----KNYGIQLAPTG--FDTMLA 466

Query: 130 ARRKHPSSRNDLNSLCKRY 148
           +   +P   ++L+ L +R+
Sbjct: 467 SYVINPEETHNLDDLAQRH 485


>gi|206562759|ref|YP_002233522.1| DNA polymerase I [Burkholderia cenocepacia J2315]
 gi|198038799|emb|CAR54761.1| DNA polymerase I [Burkholderia cenocepacia J2315]
          Length = 917

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    R++ +                  + P      P A        +  
Sbjct: 343 AFDTETTALDPMLARLVGL---------------SFSVEPGKAAYLPVA----HRGPDM- 382

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++     + +    +    + + +  + K+D   +       N D        DTL  +
Sbjct: 383 PEQLPLDEVLTRLKPWLESADRKKVGQHLKYDAQVL------ANYDIELNGIEHDTLLES 436

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 437 YVVESHRTHDMDSLALRHLGV 457


>gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 919

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 59/155 (38%), Gaps = 20/155 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLCPNGRK 54
           + N+++ +  D ET  LDS +  ++ +             L + +     QV L P    
Sbjct: 313 KINQVKLVAVDTETDNLDSMSANLVGVSFGLANGDACYIPLTHKE-----QVTLEPQQSD 367

Query: 55  N-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             + +A      + E  K + + ++  +E        + + I  N K+D+        ++
Sbjct: 368 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANHGVQV 427

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                      DT+  +   + + R++++ L  RY
Sbjct: 428 EGVAF------DTMLESYTLNSTGRHNMDELADRY 456


>gi|163739304|ref|ZP_02146715.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
 gi|161387374|gb|EDQ11732.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
          Length = 937

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 72/247 (29%), Gaps = 62/247 (25%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61
           I+  +   +  D ETTG D     ++ I                  + P      P    
Sbjct: 344 IQIRERGWVAVDTETTGFDEMVVDLVGISLC---------------VEPGRACYIP---- 384

Query: 62  LHGI---------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112
           L            +D+    +               + +   I  N K+D          
Sbjct: 385 LTHKSGSSDDLFGSDDLADGQMPLQDALDLLKPVLEDNSILKIGQNMKYDAKIFA----- 439

Query: 113 INKDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRY-----------------GITISH 154
             +  +D + I DT+ ++   H     + +++L +RY                  IT   
Sbjct: 440 --RRGIDVAPIDDTMLMSYAMHAGQHGHGMDTLSERYLNHTPIPIKPLLGTGKSAITFDR 497

Query: 155 RSKHGALL----DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210
                A+     D+ +   ++        Q   G  T  +     E+  VP ++ ++R+ 
Sbjct: 498 VPIDDAVAYAAEDADITLRLWQLFKPQLHQS--GVTTVYETL---ERPLVPVLARMEREG 552

Query: 211 PLFTRIT 217
               R T
Sbjct: 553 IKVDRDT 559


>gi|154346686|ref|XP_001569280.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 510

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 40/135 (29%), Gaps = 42/135 (31%)

Query: 80  FSEFWDFFNEQNAEWIAHNAKFDVGFINAE-----------LQRINKDPLDPSRIIDTLS 128
           F +FW    +     + HN   D+ F+               +++ +  L    I DT +
Sbjct: 239 FRQFWKILLKSRKPIVGHNFMQDIMFMIHMHETPLPVDYLEFKKLLQRTLPT--IYDTKT 296

Query: 129 IARRKHPS---SRNDLNSLC----KRYGITIS----------------------HRSKHG 159
           +A +           L SL     +R G+                             H 
Sbjct: 297 MAAKLMGDNAFQVTHLESLYQECRRRAGLLTDEFTLQYRLPPGFYNYNDYAVKQQSKAHE 356

Query: 160 ALLDSHLLSDVYIKM 174
           A  D+++    ++ +
Sbjct: 357 AAYDAYMTGIAFLLL 371


>gi|67593220|ref|XP_665703.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54656508|gb|EAL35474.1| hypothetical protein Chro.70128 [Cryptosporidium hominis]
          Length = 201

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 41/142 (28%), Gaps = 33/142 (23%)

Query: 64  GITDEFLKDKPSFSSIFSEFWDFF------NEQNAEWIAHNAKFDVGFINAELQRINKDP 117
           G+T + LK   SF SI  EF          +     ++ H+   D   +          P
Sbjct: 12  GLTWDKLKYGESFESIQKEFLQIVEHYRKESTSGLVFVGHDISNDFQVLKWT------PP 65

Query: 118 LDPSRIIDTLSIARRK------------------HPSSRNDLNSLCKR-YGITISHRSKH 158
               R   T    R+                       +  L SL K    + I   S H
Sbjct: 66  ESEIRDTCTYFPLRKLLIKSLLEKGEITHHQKEGFLRQKPSLRSLSKHVLNLNIQQGS-H 124

Query: 159 GALLDSHLLSDVYIKMMVGGSQ 180
               D+     +Y+ M+    +
Sbjct: 125 CPWEDAKSTMMLYL-MVRDRWE 145


>gi|307823067|ref|ZP_07653297.1| DNA polymerase I [Methylobacter tundripaludum SV96]
 gi|307735842|gb|EFO06689.1| DNA polymerase I [Methylobacter tundripaludum SV96]
          Length = 930

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 28/158 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           + R  K     FD ETT LD    +I+ +                  + P      P A 
Sbjct: 345 LARLEKAELFAFDTETTSLDYSKAQIVGV---------------SFAVTPGKAAYVPLAH 389

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
              G     + D+   S I  +            +  N K+D   +       N      
Sbjct: 390 DYPG-----VPDQLDRSEILEKLRPLLENPRKAKLGQNLKYDTHVL------ANHGIALR 438

Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRY-GITISHRS 156
               DT+  +   + ++ +++++ L K Y G+   H  
Sbjct: 439 GIAHDTMLESYVLNSTATKHNMDDLAKEYLGVETIHYE 476


>gi|322505865|emb|CAM44421.2| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 510

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 40/135 (29%), Gaps = 42/135 (31%)

Query: 80  FSEFWDFFNEQNAEWIAHNAKFDVGFINAE-----------LQRINKDPLDPSRIIDTLS 128
           F +FW    +     + HN   D+ F+               +++ +  L    I DT +
Sbjct: 239 FRQFWKILLKSRKPIVGHNFMQDIMFMIHMHETPLPVDYLEFKKLLQRTLPT--IYDTKT 296

Query: 129 IARRKHPS---SRNDLNSLC----KRYGITIS----------------------HRSKHG 159
           +A +           L SL     +R G+                             H 
Sbjct: 297 MAAKLMGDNAFQVTHLESLYQECRRRAGLLTDEFTLQYRLPPGFYNYNDYAVKQQSKAHE 356

Query: 160 ALLDSHLLSDVYIKM 174
           A  D+++    ++ +
Sbjct: 357 AAYDAYMTGIAFLLL 371


>gi|313675161|ref|YP_004053157.1| 3'-5' exonuclease, polb [Marivirga tractuosa DSM 4126]
 gi|312941859|gb|ADR21049.1| 3'-5' exonuclease, PolB [Marivirga tractuosa DSM 4126]
          Length = 233

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 36/123 (29%), Gaps = 30/123 (24%)

Query: 82  EFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD----------PLDPSRIIDTLSIA 130
           +     ++ N+    HN  +FD+ +I   +                    +  +DTL + 
Sbjct: 94  QILQKVDDTNSVICGHNIKEFDIPYICRRILINGLKLPSILDVSSMKPWQTPYLDTLEMW 153

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHG----------------ALL---DSHLLSDVY 171
           +         L+ L   + +  S     G                A     D  L   +Y
Sbjct: 154 KFGDRKHYTKLDLLAHIFDLPTSKDDIDGSQVYEVYYKEGDLKRIAEYCEKDVVLTCQLY 213

Query: 172 IKM 174
           +KM
Sbjct: 214 LKM 216


>gi|324507288|gb|ADY43094.1| Poly(A)-specific ribonuclease PARN [Ascaris suum]
          Length = 616

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 54/177 (30%), Gaps = 46/177 (25%)

Query: 80  FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR---------IIDTLSIA 130
            S+      +     + HN  FD+ +I         +     +         IIDT  +A
Sbjct: 279 ASQILYAIIDARLPVVGHNCLFDLLYIYQYFFADLPEDYAKWKKALNTIFPVIIDTRILA 338

Query: 131 ----RRK--HPSSRNDLNSLCKRYGITISHRSK-----------------------HGAL 161
               RR   H      L +L   +   +S  +                        H A 
Sbjct: 339 EENKRRLSWHGVMNYSLVTLGAYFKHPVSSENLPYRFPDFSLTNAALIKYADKEYFHNAA 398

Query: 162 LDSHLLSDVYIKM--MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216
            D+    + ++++  +   + ++ G K       KE K   P   LL   +P   RI
Sbjct: 399 YDAKTTGETFVRLAHLTVCNTLSLGDKP------KEVKACRPFRVLLYAVRPFANRI 449


>gi|298248987|ref|ZP_06972791.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
 gi|297546991|gb|EFH80858.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
          Length = 708

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 49/161 (30%), Gaps = 27/161 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNR--------TFQVFLCPNGRKNSPEALKLH 63
           FD+ETT LD    RI  +   +   +                  LC   R+  P+ ++ H
Sbjct: 174 FDVETTSLDPSRGRIFLVAIRDNHGHECILEAPTPEEEPALITELCAVIRRLDPDVIENH 233

Query: 64  ---GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
              G    FL+ + +   +            A            F  A   R  +     
Sbjct: 234 NLFGFDLPFLEARANALHVP----LLLGRSGAPL------QLESFEEAGAHRRKRKHFSV 283

Query: 121 S--RIIDTLSIARRK----HPSSRNDLNSLCKRYGITISHR 155
           +   +IDTL   RR            L  + + +G+    R
Sbjct: 284 AGRELIDTLDAVRRYDFVARSLPSYRLKEVARHFGMAAPER 324


>gi|297624205|ref|YP_003705639.1| diguanylate cyclase and metal dependent phosphohydrolase [Truepera
           radiovictrix DSM 17093]
 gi|297165385|gb|ADI15096.1| diguanylate cyclase and metal dependent phosphohydrolase [Truepera
           radiovictrix DSM 17093]
          Length = 671

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 11/110 (10%)

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186
           LS  +   P++R+ L  +  R G  + HR          +L +V   +  G   +    +
Sbjct: 426 LSTWKAITPAARSVLEGVALRLGHALEHR---------RVLGEVRATLEGGLLALGVALE 476

Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236
             +       ++ V     L R   L   +T  E       +  +GK A+
Sbjct: 477 ARDLETAGHTQRVVEGAERLARALGLPAELT--EALRFGAYLHDIGKLAV 524


>gi|195351291|ref|XP_002042168.1| GM10466 [Drosophila sechellia]
 gi|194123992|gb|EDW46035.1| GM10466 [Drosophila sechellia]
          Length = 914

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 57/163 (34%), Gaps = 21/163 (12%)

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS--- 137
           +E  D      +    HN  F   F+ +++ R  +  ++ +R+ +    AR   PS    
Sbjct: 711 AELLDVVGAAGSAQGRHNLAFLSAFLRSDVDRCLEILIETNRLPEAAFFARTYLPSQMSR 770

Query: 138 -----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
                R  L  + ++ G +++          +    +++  +   G  +       E+R 
Sbjct: 771 IVELWREKLGKVNEKAGQSLA--------DPAQYT-NLFPGL---GDALRVEQHLQEERA 818

Query: 193 FKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235
            K   +   ++ L     PL   +   E     + ++   K A
Sbjct: 819 RKAPARLAAHLPLNSERHPL-QELFAAEQAGAGQQLEEKVKPA 860


>gi|306845750|ref|ZP_07478319.1| N-formylglutamate amidohydrolase [Brucella sp. BO1]
 gi|306274071|gb|EFM55898.1| N-formylglutamate amidohydrolase [Brucella sp. BO1]
          Length = 265

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 19/144 (13%)

Query: 20  DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS-- 77
           + + DR     AV +++      +  + +C +   + PE+    G+  E  K   ++   
Sbjct: 3   NEREDRAASCEAVFVINEG--GESPYLLVCEHASNHMPESFAGLGLDAETRKTHIAWDPG 60

Query: 78  --SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHP 135
              +  E        +A  +          +    + ++   L P     TL        
Sbjct: 61  AVEVARELSKAL---DAPLV---EAGLSRLLIDCNRPLDAPDLIPEISETTLVP------ 108

Query: 136 SSRNDLNSLCKRYGITISHRSKHG 159
              + LN+  +   I +SHR  H 
Sbjct: 109 -GNHGLNTAERMARIDLSHRPFHR 131


>gi|66392089|ref|YP_239314.1| possible DNA polymerase subunit [Xanthomonas phage Xp15]
 gi|62529199|gb|AAX84882.1| possible DNA polymerase subunit [Xanthomonas phage Xp15]
          Length = 640

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 31/126 (24%)

Query: 80  FSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQ--RINKDP--LDPSRIIDTLSIARRKH 134
             E  D  +    + + AHNA FD+ F+ A+LQ  R+   P  L   +  DT  + +   
Sbjct: 60  LREMIDLLDSVGNDVVYAHNALFDIAFMIAQLQPRRMGAIPDVLKRVKWRDTGLLTKWLI 119

Query: 135 PSSR-------NDLNSLCKRY----------------GITISHRSKH---GALLDSHLLS 168
              +         L +L   +                G++     ++      LD+ +  
Sbjct: 120 NGQQPETMRFSYSLANLVATFLKDDEMTPFFVKMKSQGVSPGDNPEYCEKRGELDAIMTL 179

Query: 169 DVYIKM 174
            + +K+
Sbjct: 180 KLALKL 185


>gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M]
 gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M]
          Length = 920

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    R++ +                  + P      P A        +  
Sbjct: 346 AFDTETTALDPMVARLVGL---------------SFAVEPGKAAYLPVA----HRGPDM- 385

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++     + +    +    + + +  + K+D   +      +N          DTL  +
Sbjct: 386 PEQLPLDDVLARLKPWLESPDRKKVGQHLKYDAQVLANYGIELNGIE------HDTLLES 439

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 440 YVLESHRTHDMDSLALRHLGV 460


>gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1]
 gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1]
          Length = 920

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    R++ +                  + P      P A        +  
Sbjct: 346 AFDTETTALDPMVARLVGL---------------SFAVEPGKAAYLPVA----HRGPDM- 385

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++     + +    +    + + +  + K+D   +      +N          DTL  +
Sbjct: 386 PEQLPLDDVLARLKSWLESPDRKKVGQHLKYDAQVLANYGIELNGIE------HDTLLES 439

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 440 YVLESHRTHDMDSLALRHLGV 460


>gi|194860652|ref|XP_001969629.1| GG23847 [Drosophila erecta]
 gi|190661496|gb|EDV58688.1| GG23847 [Drosophila erecta]
          Length = 913

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 53/147 (36%), Gaps = 20/147 (13%)

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS--- 137
           ++  +      +    HN  F   F+ ++++R  +  ++ +R+ +    AR   PS    
Sbjct: 711 AQLLEEVGAAGSAQGRHNLAFLSAFLCSDVERCLEILIETNRLPEAAFFARTYLPSQMSK 770

Query: 138 -----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
                R  L  + ++ G +++          +    +++  +   G  +       E+R 
Sbjct: 771 IVELWREKLGKVNEKAGQSLA--------DPAQYT-NLFPGL---GDALRVEQHLQEERA 818

Query: 193 FKEEKKTVPNISLLKRDKPLFTRITKE 219
            K   +   ++ L     PL   +  E
Sbjct: 819 RKAPARLAAHLPLNSERHPLQELLAAE 845


>gi|227894104|ref|ZP_04011909.1| hypothetical protein HMPREF0548_1627 [Lactobacillus ultunensis
          DSM 16047]
 gi|227864082|gb|EEJ71503.1| hypothetical protein HMPREF0548_1627 [Lactobacillus ultunensis
          DSM 16047]
          Length = 99

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNR 42
            +IETT L+   D+I EI A +    S    
Sbjct: 22 AVEIETTDLNPNKDQITEIAARKYRKNSLKEE 53


>gi|196004630|ref|XP_002112182.1| hypothetical protein TRIADDRAFT_23482 [Trichoplax adhaerens]
 gi|190586081|gb|EDV26149.1| hypothetical protein TRIADDRAFT_23482 [Trichoplax adhaerens]
          Length = 165

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 43/158 (27%), Gaps = 22/158 (13%)

Query: 18  GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN----SPEALKLH---GITDEFL 70
           GLD  +  IIE+  +               +                + H   G+T+   
Sbjct: 1   GLDVNSCHIIEMACIITDGNLNIAAEAPTLVIHQPDSIMDNMDEWCTEHHGKSGLTNAVK 60

Query: 71  KDKPSFSSIFSEFWDFFNE----QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
               S     +   DF  +    +      +    D  F+   + +           + T
Sbjct: 61  SSTISLQQAENTMLDFVRQHTLPKRCPLAGNTVYMDQKFLEKYMPQFVDHLHYRIVDVST 120

Query: 127 L-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  + RR +P          K +    +    H AL D
Sbjct: 121 IKELCRRWYP----------KEFAKAPAKPCNHRALDD 148


>gi|188996542|ref|YP_001930793.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931609|gb|ACD66239.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 587

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 20/94 (21%)

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             + L  I  E +K+            +    +    I HN KFD+ F+   L  +    
Sbjct: 58  FVIDLLKINPEVVKN---------HIQNLIENKG--IIGHNLKFDLKFLKTNLNIL---- 102

Query: 118 LDPSRIIDTLSIARRKHPS---SRNDLNSLCKRY 148
             P  + DT+  ++         R+ L++  KR+
Sbjct: 103 --PKIVFDTMIASQILAKGDSNQRHSLSASAKRF 134


>gi|307823166|ref|ZP_07653396.1| sulfite reductase (NADPH) hemoprotein, beta-component
           [Methylobacter tundripaludum SV96]
 gi|307735941|gb|EFO06788.1| sulfite reductase (NADPH) hemoprotein, beta-component
           [Methylobacter tundripaludum SV96]
          Length = 573

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 30  GAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE 89
           G    + + + +R    +  P  R  + +A +LHGI    L  K + + I +   D    
Sbjct: 90  GVCTAMQWLEVDRIANTYCNPAIRLTTRQAYQLHGIVKRDL--KRTIAEINAALLDTIAA 147

Query: 90  QN 91
             
Sbjct: 148 CG 149


>gi|319957416|ref|YP_004168679.1| 3'-5' exonuclease, polb [Nitratifractor salsuginis DSM 16511]
 gi|319419820|gb|ADV46930.1| 3'-5' exonuclease, PolB [Nitratifractor salsuginis DSM 16511]
          Length = 266

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 23/103 (22%)

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPL------DPSRII 124
           +    + I   F+DF  E+N   ++ N + FD+  +     R N          +P    
Sbjct: 78  NSEDEAKIIRHFFDFIEEKNPRLVSFNGRGFDMPMLLIRAMRYNFSFPAWFDQNNPQLNK 137

Query: 125 DTLSIARRKHPSSRN----------------DLNSLCKRYGIT 151
                 R+++    +                 L+ LC   GI 
Sbjct: 138 TKWENYRQRYAEEFHTDLLDSLGGFGAVRNLKLDLLCTMAGIP 180


>gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205]
 gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205]
          Length = 921

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 55/187 (29%), Gaps = 50/187 (26%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D ETT LD +   ++        +        + +  P          +L        
Sbjct: 350 AIDTETTNLDYRVAELVGFSIAFDAN--------EAYYVPLAHDYEGAPEQL-------- 393

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
               S   + ++       +  + I H+ K+D           N   +      DT+  +
Sbjct: 394 ----SREQVLAQIKPILENEQVKKIGHHLKYDAHIF------ANHGIIIQGWYFDTMLAS 443

Query: 131 RRKHPSS-RNDLNSLCKRY----------------------GITISHRSKHGALLDSHLL 167
              + ++ R+ ++ + + Y                       I +   + H A  D+H+ 
Sbjct: 444 YVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIELEV-AAHYAAEDAHVT 502

Query: 168 SDVYIKM 174
             +Y  +
Sbjct: 503 YRLYEVL 509


>gi|239928035|ref|ZP_04684988.1| hypothetical protein SghaA1_07411 [Streptomyces ghanaensis ATCC
           14672]
          Length = 110

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 19/109 (17%)

Query: 80  FSEFWDFFNEQNA----EWIAHNAKFDVGFINAELQRI-NKDPLDPSRIID--TLSIARR 132
             EF D+  E  A        + A +D  F    L R     P   S  +D  TL   + 
Sbjct: 1   MREFTDWVREAAAGAQPVMCGYPAPYDWTFPYGYLIRFTGSSPFGHSGCLDMKTLYATKA 60

Query: 133 KHPSSRNDLNSLCKRYGI----TISHRSK-HGALLDSHLLSDVYIKMMV 176
             P     L ++ K  G      +S R   H AL D+   ++++  +M 
Sbjct: 61  GLP-----LRAVAK--GTMPREPLSRRRHTHHALDDAIEQAELFANLMA 102


>gi|213408461|ref|XP_002175001.1| conserved hypothetical protein [Schizosaccharomyces japonicus
           yFS275]
 gi|212003048|gb|EEB08708.1| conserved hypothetical protein [Schizosaccharomyces japonicus
           yFS275]
          Length = 248

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 9/118 (7%)

Query: 86  FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK----HPSSRNDL 141
           +    N   +AH  + ++ ++     ++  +      ++DT  + R           N L
Sbjct: 104 YLRLPNLVVVAHGLRNELKYLG----KLRIEIPPHVALVDTQDVYRFYSYTCLGVVHNQL 159

Query: 142 NSLCKRYG-ITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198
             L K    +++     H A  D+H   D  + M    +        +  +  K +KK
Sbjct: 160 IGLNKLLSSLSVIPFGLHNAGNDAHYTKDALLSMATALTSHEQALDADRCKTIKAQKK 217


>gi|108796865|ref|YP_636461.1| hypothetical protein StpuCp098 [Staurastrum punctulatum]
 gi|61393633|gb|AAX45774.1| hypothetical protein [Staurastrum punctulatum]
          Length = 102

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 91  NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR----KHPSSRNDLNSLCK 146
               +AH  +FD  F+ A  +R++   L  SR +DT+    R    +   +R  L  L +
Sbjct: 3   GLLLLAHQQEFDFKFLKASAKRLSYKCLQGSR-VDTVDKIHRTLINEEKLARKSLLKLAE 61

Query: 147 RYG 149
            +G
Sbjct: 62  HFG 64


>gi|325114345|emb|CBZ49902.1| hypothetical protein NCLIV_003870 [Neospora caninum Liverpool]
          Length = 367

 Score = 36.4 bits (83), Expect = 4.0,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 18/170 (10%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D E  G     +  I   A   +     +      + P+ R        + G++   
Sbjct: 60  VSLDCEMVGCGPDGN--ISALAQVSICDENGDVLLDEIVMPDMRITDFRH-HITGLSWNI 116

Query: 70  LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
           ++D   SF +  +   D    +    + H  + D+  +  +       P+   R  DT  
Sbjct: 117 IRDRGISFEAARTLVTDI--TRGKVLVGHALQHDLQVLAIDH------PVHMIR--DTSK 166

Query: 129 IARRKHPS-SRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
               + P  +RN    L  L   +         H ++ D     D+Y+K 
Sbjct: 167 YKPLRPPGMTRNAVPSLKRLTNHWLNREIQTGIHNSVEDCRAAMDLYLKF 216


>gi|261736081|ref|YP_003257423.1| hypothetical protein pZL12-59 [Streptomyces sp. ZL12]
 gi|261349204|gb|ACX71136.1| hypothetical protein pZL12-59 [Streptomyces sp. ZL12]
          Length = 200

 Score = 36.4 bits (83), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 28/96 (29%), Gaps = 14/96 (14%)

Query: 73  KPSFSSIFSEFWDFFNEQNA--EWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129
           KP    I  E  DF     +  E  A+   +D   +     R+   P   P    D    
Sbjct: 99  KPP-DEIADEVMDFIRASGSDVELWANYGAYDHVCLAQMWGRMIDLPEGVPMFTHDIQQE 157

Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165
           ARR                 +      +H AL D+ 
Sbjct: 158 ARRLGFGWG----------DLPKQESGEHNALADAR 183


>gi|215692771|dbj|BAG88201.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 206

 Score = 36.4 bits (83), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 87  FNEQNAEWIAHNAKFDVGFINAELQRINK--DPLDPSRIIDTLSIARRKHPSSRNDLNSL 144
              +N   +   + +D   +     R+ +   P   +R I+     +      R +L   
Sbjct: 11  IKHKNFAVVTW-SNWDCRVMLESECRLKRIRKPPYFNRWINLKVPFQEVFGGVRCNLKEA 69

Query: 145 CKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178
            +  G+T   R  H  L D+   + +   +M  G
Sbjct: 70  VQLSGLTWEGR-AHCGLDDARNTARLLALLMHRG 102


>gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
          Length = 917

 Score = 36.4 bits (83), Expect = 4.0,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    R++ +                  + P      P A        +  
Sbjct: 343 AFDTETTALDPMVARLVGL---------------SFAVEPGKAAYLPVA----HRGPDM- 382

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            ++     + +    +    + + +  + K+D   +      +N          DTL  +
Sbjct: 383 PEQLPLDDVLARLKPWLESPDRKKVGQHLKYDAQVLANYGIELNGIE------HDTLLES 436

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 437 YVLESHRTHDMDSLALRHLGV 457


>gi|39945028|ref|XP_362051.1| hypothetical protein MGG_04496 [Magnaporthe oryzae 70-15]
 gi|145011396|gb|EDJ96052.1| hypothetical protein MGG_04496 [Magnaporthe oryzae 70-15]
          Length = 223

 Score = 36.4 bits (83), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 13/110 (11%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGR---KNSPEALKLH--- 63
            D E TGL+  ++ IIEI  +        K    +   +        K      K H   
Sbjct: 11  IDCEMTGLNPDSEEIIEIFCLVTDGDLNLKDEEGWGTVVHQTQERMDKMDEWCTKQHGGS 70

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQ-----NAEWIAHNAKFDVGFINA 108
           G+T   +    +          +  +       A     +   D  F+  
Sbjct: 71  GLTARVVGSTTTPEEAADGLLAYIKKHVPHAGVALLAGSSVHHDRAFLRR 120


>gi|218961649|ref|YP_001741424.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
 gi|167730306|emb|CAO81218.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
          Length = 918

 Score = 36.4 bits (83), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 32/144 (22%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
              + ++I  D ET   +     ++ I     +D  K       +  P G +    A+ L
Sbjct: 338 ELKEAKQISLDTETDSPEPMRANLVGIS--FCMDEKK------AYYLPLGHQL---AVNL 386

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                           +     D    +    + HN KFD+  +      +       + 
Sbjct: 387 ------------PLPEVLRHLEDAL--KGKLLLGHNLKFDLIVLARNGLEL------DNP 426

Query: 123 IIDTLSIARRKHPSS-RNDLNSLC 145
           + DT+  A    P +    L +  
Sbjct: 427 LFDTMLAAYILDPGTLNYSLETCA 450


>gi|154149826|ref|YP_001403444.1| hypothetical protein Mboo_0279 [Candidatus Methanoregula boonei
           6A8]
 gi|153998378|gb|ABS54801.1| conserved hypothetical protein [Methanoregula boonei 6A8]
          Length = 361

 Score = 36.4 bits (83), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 43/139 (30%), Gaps = 29/139 (20%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
            +  DIET GL S+   II  G   + + +   R +                        
Sbjct: 186 FVFLDIETLGLFSRP--IILFGVGTVEERNFVVRQY------------------------ 219

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127
            L+D    ++  +     F  Q    +  N   FD+ ++   L      P+      D L
Sbjct: 220 LLRDIGEEAAALTALAGHFARQKKALVTFNGKAFDLPYVQDRLAYYGIPPVSRVPHFDVL 279

Query: 128 SIARRKHPS--SRNDLNSL 144
             ARR+         L  L
Sbjct: 280 HFARRRWKGQYPSCRLGEL 298


>gi|298489723|ref|YP_003719900.1| DNA polymerase I ['Nostoc azollae' 0708]
 gi|298231641|gb|ADI62777.1| DNA polymerase I ['Nostoc azollae' 0708]
          Length = 982

 Score = 36.4 bits (83), Expect = 4.1,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 28/154 (18%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N  + + +D ETT L+ ++  ++ IG         T      ++ P G K        H
Sbjct: 381 TNLEKPVAWDTETTALEPRDAALVGIGCCW-----GTGSDEAAYI-PVGHKIG------H 428

Query: 64  GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
            +             + S         N      NAKFD   +  + Q IN        +
Sbjct: 429 NL---------QLDLVVSALRPILENANYPKTFQNAKFDR--LIFKCQGINL----VGVV 473

Query: 124 IDTLSIARRKHPSSRNDLNSLCKR-YGITISHRS 156
            DT+  +   +P + ++L+ L  R  G+ ++  +
Sbjct: 474 FDTMLASYLINPDTTHNLSDLSLRNLGLQLTEYN 507


>gi|293339859|ref|XP_001075629.2| PREDICTED: rCG49798-like [Rattus norvegicus]
 gi|149042528|gb|EDL96165.1| rCG49798 [Rattus norvegicus]
          Length = 605

 Score = 36.4 bits (83), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 30/118 (25%), Gaps = 29/118 (24%)

Query: 86  FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK--------HPSS 137
           +  EQ    + HN   DV     +        L+  + + T    R           P  
Sbjct: 250 YAKEQGKLVVGHNMLLDVMHTIHQFYCPLPVDLNEFKEMTTCVFPRLLDTKLMASTQPFK 309

Query: 138 ----RNDLNSLCKRYG-----------------ITISHRSKHGALLDSHLLSDVYIKM 174
                  L  L KR                      +    H A  D+++    +I M
Sbjct: 310 DIINNTSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISM 367


>gi|295094802|emb|CBK83893.1| DNA polymerase family B, exonuclease domain. [Coprococcus sp.
           ART55/1]
          Length = 352

 Score = 36.4 bits (83), Expect = 4.2,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 32/143 (22%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLHGITDEFL 70
           FDIETTGL +K   +  IG     D       F+   +  +   + P          E L
Sbjct: 27  FDIETTGLSAKRSDLYLIGCSYFSD-----SAFRTQLIFNDNGTSEP----------EML 71

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-PLDPSRIIDTLS 128
                F  I           +   +++N   FD+ ++  ++++ + D  LD  + +D   
Sbjct: 72  SH---FEQILK--------NHKILVSYNGDTFDIPYLLKKMEQFDVDTTLDNIQSVDIYR 120

Query: 129 IARRKHPSSRNDLNSLCKRYGIT 151
             R+     R  L+S  K++ I 
Sbjct: 121 TTRKYKKLLR--LDS-AKQFDIE 140


>gi|291442766|ref|ZP_06582156.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291345661|gb|EFE72617.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 166

 Score = 36.0 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 42/145 (28%), Gaps = 11/145 (7%)

Query: 37  YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
             +     ++ + P   + SP   +L G+T   +     F+          +       A
Sbjct: 21  GGERLAKHRLLVRPARSEVSPLCTELTGLTQADVDQGLPFTKACRALAAK-HHTGLIPWA 79

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIID-----TLSIARRKHPSSRNDLNSLCKRYGIT 151
               +D      + +          R  +     T S   R+ P             G+ 
Sbjct: 80  SWGDYDRNQFTRQCRHTGTQYPFNHRHTNVKAAFTTSYGLRRRPGMPR----APTVAGLP 135

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMV 176
           +  R  H    D+  ++ + + +M 
Sbjct: 136 LEGR-HHRGDDDAWNIAALVLDLMG 159


>gi|295839702|ref|ZP_06826635.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB74]
 gi|295827618|gb|EFG65509.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB74]
          Length = 488

 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 9/62 (14%)

Query: 152 ISHR----SKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207
             H      +HGAL D+      Y + M   ++  F  +  ED   +     +P ++++ 
Sbjct: 2   NDHHPIEGEEHGALGDAE-----YERFMELAAEEGFDVEDVEDAIGEAGHGPLPRLAVVG 56

Query: 208 RD 209
           R 
Sbjct: 57  RP 58


>gi|295839902|ref|ZP_06826835.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
 gi|197696731|gb|EDY43664.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
          Length = 242

 Score = 36.0 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 15/148 (10%)

Query: 17  TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD---- 72
           TG  ++ DR++    V         R  +  +CP      P    L G++++ ++     
Sbjct: 19  TGPRTEKDRVLSAAVVVQDHADAPPRFERWLVCPGVPVPRPARTAL-GLSEDHIRRNGRW 77

Query: 73  -KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI------NKDPLDPSRIID 125
             P    +     +         +  +A   +  ++ EL+R       ++    P R++D
Sbjct: 78  PAPVMEEVAGALHEH-AVTGRPLVVLDAPATLALLDRELRRHRATSLTDRLGPKPLRVVD 136

Query: 126 --TLSIARRKHPSSRNDLNSLCKRYGIT 151
              L     +       L +LC  Y + 
Sbjct: 137 PGLLDARLDRFRKGERALENLCSVYRVP 164


>gi|293346675|ref|XP_002726374.1| PREDICTED: calcium-dependent secretion activator 1-like isoform 2
           [Rattus norvegicus]
 gi|293358451|ref|XP_002729334.1| PREDICTED: calcium-dependent secretion activator 1-like isoform 1
           [Rattus norvegicus]
          Length = 1304

 Score = 36.0 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 27/143 (18%)

Query: 20  DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSI 79
           D + DRI+ + A+    Y  T ++++       +K +P+   LH        D   F   
Sbjct: 577 DDEQDRILWVQAM----YRATGQSYKPVPAVQSQKLNPKGGTLH-------ADAQLFGKD 625

Query: 80  FSEFW-----DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH 134
              F      +F +    +        D  F+   LQR   D     R+ D+ S      
Sbjct: 626 ADRFQKHGMDEFISASPCKL-------DHAFLFRILQRQTLD----HRLNDSYSCLGWFS 674

Query: 135 PSSRNDLNSLCKRYGITISHRSK 157
           P     L+  C RYG+   HR  
Sbjct: 675 PGQVFVLDEYCARYGVRGCHRHL 697


>gi|239934314|ref|ZP_04691267.1| hypothetical protein SghaA1_39330 [Streptomyces ghanaensis ATCC
           14672]
          Length = 165

 Score = 36.0 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 42/145 (28%), Gaps = 11/145 (7%)

Query: 37  YSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA 96
             +     ++ + P   + SP   +L G+T   +     F+          +       A
Sbjct: 20  GGERLAKHRLLVRPARSEVSPLCTELTGLTQADVDQGLPFTKACRALAAK-HHTGLIPWA 78

Query: 97  HNAKFDVGFINAELQRINKDPLDPSRIID-----TLSIARRKHPSSRNDLNSLCKRYGIT 151
               +D      + +          R  +     T S   R+ P             G+ 
Sbjct: 79  SWGDYDRNQFTRQCRHTGTQYPFNHRHTNVKAAFTTSYGLRRRPGMPR----APTVAGLP 134

Query: 152 ISHRSKHGALLDSHLLSDVYIKMMV 176
           +  R  H    D+  ++ + + +M 
Sbjct: 135 LEGR-HHRGDDDAWNIAALVLDLMG 158


>gi|156538709|ref|XP_001607810.1| PREDICTED: similar to GA21025-PA [Nasonia vitripennis]
          Length = 586

 Score = 36.0 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 15/104 (14%)

Query: 12  FDIE----TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
            D E    T+G        +E+  + ++D  K N  +   + P+ +       +  GIT+
Sbjct: 247 LDCEMCRTTSGF-------LELTRISIVD-EKLNIVYDTLVMPDNKIVDYL-TRFSGITE 297

Query: 68  EFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110
           + L++     + +  +F   F   +A  +  +   D+  +    
Sbjct: 298 KMLENVNVKLADV-QKFLRAFLPPDAILVGQSLNSDLHALRMMH 340


>gi|321251519|ref|XP_003192094.1| RNA exonuclease; Rex2p [Cryptococcus gattii WM276]
 gi|317458562|gb|ADV20307.1| RNA exonuclease, putative; Rex2p [Cryptococcus gattii WM276]
          Length = 214

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 22/169 (13%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE----ALKLH---G 64
            D E TGLD  NDRIIEI  +      K       ++    ++          + H   G
Sbjct: 16  VDCEMTGLDFLNDRIIEIAIIITDGRLKPVDEGISYIIKTPKEILDNMGDWCREQHGKSG 75

Query: 65  ITDEFLKDKPS-----FSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQRINKDPL 118
           +T   L D P         +      +  E+ A  +A  +   D+ F+   + ++ K   
Sbjct: 76  LTQACL-DSPYSYDTVVEKVLDYIRKWIPERGAGLLAGSSVHADMRFMLMGMPQVMKHLS 134

Query: 119 DPSRIIDTL-SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166
                + ++  I RR +P       ++  +   + +    H AL D   
Sbjct: 135 YRILDVSSVKEICRRWYP-------TVRAQEQESRTTECSHRALDDIRA 176


>gi|293346679|ref|XP_002726376.1| PREDICTED: calcium-dependent secretion activator 1-like isoform 4
           [Rattus norvegicus]
 gi|293358456|ref|XP_002729336.1| PREDICTED: calcium-dependent secretion activator 1-like isoform 3
           [Rattus norvegicus]
          Length = 1300

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 27/143 (18%)

Query: 20  DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSI 79
           D + DRI+ + A+    Y  T ++++       +K +P+   LH        D   F   
Sbjct: 577 DDEQDRILWVQAM----YRATGQSYKPVPAVQSQKLNPKGGTLH-------ADAQLFGKD 625

Query: 80  FSEFW-----DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH 134
              F      +F +    +        D  F+   LQR   D     R+ D+ S      
Sbjct: 626 ADRFQKHGMDEFISASPCKL-------DHAFLFRILQRQTLD----HRLNDSYSCLGWFS 674

Query: 135 PSSRNDLNSLCKRYGITISHRSK 157
           P     L+  C RYG+   HR  
Sbjct: 675 PGQVFVLDEYCARYGVRGCHRHL 697


>gi|168011687|ref|XP_001758534.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690144|gb|EDQ76512.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 623

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 66/179 (36%), Gaps = 36/179 (20%)

Query: 5   NKMRKIVFDIE--TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           + ++ +  D E  T   D K   ++ + AV     +  +      + PNG+        +
Sbjct: 165 SPVKLVSLDCEMVTCEGDVK--ELVRVCAVGSDYNTLVDE----LVVPNGKVTDYL-TSI 217

Query: 63  HGITDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
            G++++ L+ + + S   +     D         + H+  +D+  +           +D 
Sbjct: 218 TGVSEKDLQ-RVTLSQAGVQKLVLDLLTP-GTILVGHSLHYDLRALQ----------IDH 265

Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISH-----------RSKHGALLDSHL 166
            R+IDT  + R     PS    L++LC+ +   I H              H  L DS +
Sbjct: 266 KRVIDTSLLFRDPSWPPSYSPSLSNLCQIFDKIIGHQSILKYKFREDDKPHDCLDDSIV 324


>gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 957

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 59/155 (38%), Gaps = 20/155 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLCPNGRK 54
           + N+++ +  D ET  LDS +  ++ +             L + +     QV L P    
Sbjct: 351 KINQVKLVAVDTETDNLDSMSANLVGVSFGLANGDACYIPLTHKE-----QVTLEPQQSD 405

Query: 55  N-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             + +A      + E  K + + ++  +E        + + I  N K+D+        ++
Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANHGVQV 465

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                      DT+  +   + + R++++ L  RY
Sbjct: 466 AGVAF------DTMLESYTLNSTGRHNMDELADRY 494


>gi|237755371|ref|ZP_04583999.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692455|gb|EEP61435.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 586

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 20/94 (21%)

Query: 58  EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             + L  I  E +K+            +    +    I HN KFD+ F+   L  +    
Sbjct: 57  FVIDLLKINPEVVKN---------HIQNLIENKG--IIGHNLKFDLKFLKTNLNIL---- 101

Query: 118 LDPSRIIDTLSIARRKHPS---SRNDLNSLCKRY 148
             P  + DT+  ++         R+ L++  KR+
Sbjct: 102 --PKIVFDTMIASQILAKGDNSQRHSLSASAKRF 133


>gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 957

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 59/155 (38%), Gaps = 20/155 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLCPNGRK 54
           + N+++ +  D ET  LDS +  ++ +             L + +     QV L P    
Sbjct: 351 KINQVKLVAVDTETDNLDSMSANLVGVSFGLANGDACYIPLTHKE-----QVTLEPQQSD 405

Query: 55  N-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             + +A      + E  K + + ++  +E        + + I  N K+D+        ++
Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANHGVQV 465

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                      DT+  +   + + R++++ L  RY
Sbjct: 466 AGVAF------DTMLESYTLNSTGRHNMDELADRY 494


>gi|300121996|emb|CBK22570.2| unnamed protein product [Blastocystis hominis]
          Length = 780

 Score = 36.0 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 29/100 (29%), Gaps = 26/100 (26%)

Query: 75  SFSSIFSEFWDFFNEQNAEWI-AHNAKFD-VGFINAELQRINKDPLDPSR---------- 122
           + + +      + N  + + +  HN   D +  + +   R      +  R          
Sbjct: 52  TEAELVHSLLKYVNTMDPDLVVGHNITGDDLFMLQSSFLRHKLSWWEMGRLRYKQPPRQF 111

Query: 123 --------------IIDTLSIARRKHPSSRNDLNSLCKRY 148
                         ++DT + A+         L +L  +Y
Sbjct: 112 PPNEVAMKLLSGRLVVDTYTSAKELIHEDNYSLPALAAKY 151


>gi|327310856|ref|YP_004337753.1| gluconate dehydratase [Thermoproteus uzoniensis 768-20]
 gi|326947335|gb|AEA12441.1| gluconate dehydratase (GAD) [Thermoproteus uzoniensis 768-20]
          Length = 390

 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           IT + LK+      I +   +   ++    I H+ +FD        +R+
Sbjct: 169 ITPKRLKEA---EEIVAAVREAVGDEVDILIEHHGRFDANAAVEIAKRL 214


>gi|260870763|ref|YP_003237165.1| putative exonuclease [Escherichia coli O111:H- str. 11128]
 gi|312965289|ref|ZP_07779522.1| endodeoxyribonuclease [Escherichia coli 2362-75]
 gi|257767119|dbj|BAI38614.1| putative exonuclease [Escherichia coli O111:H- str. 11128]
 gi|312289963|gb|EFR17850.1| endodeoxyribonuclease [Escherichia coli 2362-75]
 gi|323161392|gb|EFZ47299.1| endodeoxyribonuclease [Escherichia coli E128010]
 gi|323177623|gb|EFZ63208.1| endodeoxyribonuclease [Escherichia coli 1180]
          Length = 190

 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 65/201 (32%), Gaps = 50/201 (24%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC----------PNGRKN 55
           M  ++ D+ET G + K+  I+ IGAV    +     + F   +           P+G   
Sbjct: 1   MNNLMIDLETMGKN-KDAPIVSIGAVFFTPETGDIGQEFYAVVSLDSAMKQGATPDGDTI 59

Query: 56  ------SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVG 104
                 SPEA     I D       S S   SE   F N      +  +   + A FD  
Sbjct: 60  LWWLKQSPEARAAICIDDTL-----SISDALSELNHFINRHADNTKYLKVWGNGATFDNV 114

Query: 105 FINAELQRIN-KDPLDPSRIID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            +    +R     P       D     TL  +    P           +  +      +H
Sbjct: 115 ILRGAYERAGQICPWAYWNDHDVRTIVTLGRSIGFDP-----------KMDMPFDGE-RH 162

Query: 159 GALLDSHLLSD----VYIKMM 175
            AL D+   +     ++ K++
Sbjct: 163 NALADARHQAKYVSAIWQKLI 183


>gi|83855330|ref|ZP_00948860.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
 gi|83843173|gb|EAP82340.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
          Length = 932

 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 28/146 (19%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI--- 65
            +  D ETTGLD    +++ +                  + P      P   K  G    
Sbjct: 346 YVAVDTETTGLDDMVAQLVGVSLC---------------VEPGKACYIPLIHKARGSDDL 390

Query: 66  --TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123
             +D+  + +               + +   I  N K+D          IN  P+D    
Sbjct: 391 FGSDDLAEGQIPTEEALRLLTPMLEDPSILKIGQNMKYDSKIFAQL--GINVAPID---- 444

Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRY 148
            DT+ ++   H     + +++L +RY
Sbjct: 445 -DTMLLSYAMHAGLHGHGMDTLSERY 469


>gi|261200489|ref|XP_002626645.1| CAF1 family ribonuclease [Ajellomyces dermatitidis SLH14081]
 gi|239593717|gb|EEQ76298.1| CAF1 family ribonuclease [Ajellomyces dermatitidis SLH14081]
          Length = 493

 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 44/138 (31%), Gaps = 27/138 (19%)

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI- 123
           I D    D  + S+   +       +    + HN   D+            D ++  +  
Sbjct: 178 IPDSATVDAEALSNYSDDLRSKLKSRQPVLVGHNLFTDLINFYKCFIGNLPDRIEDFKEA 237

Query: 124 --------IDTLSIARRKHPS--SRNDL----NSLC-----KRYGITISH------RSKH 158
                   IDT  +A     S    + L    ++L      K + I   H      +  H
Sbjct: 238 IHSLFPLVIDTKYMATHNCSSVTPSSSLAEINDNLAMRKTPKIF-IDPEHDKYVVEKPLH 296

Query: 159 GALLDSHLLSDVYIKMMV 176
            A  DS L + V IK+ V
Sbjct: 297 EAGYDSLLTAKVLIKLTV 314


>gi|170691111|ref|ZP_02882277.1| DNA polymerase I [Burkholderia graminis C4D1M]
 gi|170144360|gb|EDT12522.1| DNA polymerase I [Burkholderia graminis C4D1M]
          Length = 913

 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 45/140 (32%), Gaps = 27/140 (19%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71
           FD ETT LD    +I+ +       ++        ++ P   +     ++L         
Sbjct: 340 FDTETTSLDPMVAQIVGLSFSVEAGHA-------AYV-PVAHRGPDAPVQL--------- 382

Query: 72  DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131
                  + ++   +      + +  + K+D   +       N          DTL  + 
Sbjct: 383 ---PRDEVLAKLKPWLESAEHKKVGQHLKYDEQVL------ANYGIEMRGVEHDTLLQSY 433

Query: 132 RKHPSSRNDLNSLC-KRYGI 150
                  +D+++L  +  GI
Sbjct: 434 VLESHRPHDMDNLALRHLGI 453


>gi|119491524|ref|XP_001263283.1| RNA exonuclease Rex2, putative [Neosartorya fischeri NRRL 181]
 gi|119411443|gb|EAW21386.1| RNA exonuclease Rex2, putative [Neosartorya fischeri NRRL 181]
          Length = 188

 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRK---NS 56
          + ++    +  D E TGL+ + D I++I                F+  +  +       S
Sbjct: 3  LERSTDPLVWIDCEMTGLNPETDTILQICCYITDANLNLLDPEGFETIIRHDRSVLDSMS 62

Query: 57 PEALKLHGIT 66
          P  +  HG T
Sbjct: 63 PWCVDTHGRT 72


>gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae L20]
 gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 957

 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 59/155 (38%), Gaps = 20/155 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLCPNGRK 54
           + N+++ +  D ET  LDS +  ++ +             L + +     QV L P    
Sbjct: 351 KINQVKLVAVDTETDNLDSMSANLVGVSFGLANGDACYIPLTHKE-----QVTLEPQQSD 405

Query: 55  N-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             + +A      + E  K + + ++  +E        + + I  N K+D+        ++
Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANHGVQV 465

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                      DT+  +   + + R++++ L  RY
Sbjct: 466 AGVAF------DTMLESYTLNSTGRHNMDELADRY 494


>gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 957

 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 59/155 (38%), Gaps = 20/155 (12%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEI--------GAVELLDYSKTNRTFQVFLCPNGRK 54
           + N+++ +  D ET  LDS +  ++ +             L + +     QV L P    
Sbjct: 351 KINQVKLVAVDTETDNLDSMSANLVGVSFGLANGDACYIPLTHKE-----QVTLEPQQSD 405

Query: 55  N-SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
             + +A      + E  K + + ++  +E        + + I  N K+D+        ++
Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANHGVQV 465

Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                      DT+  +   + + R++++ L  RY
Sbjct: 466 AGVAF------DTMLESYTLNSTGRHNMDELADRY 494


>gi|150866852|ref|XP_001386582.2| hypothetical protein PICST_63845 [Scheffersomyces stipitis CBS
           6054]
 gi|149388108|gb|ABN68553.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 262

 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 91  NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150
           N   + H+ K DV ++    +++  +  D  + +DT ++       + N L +      +
Sbjct: 172 NCALVGHDVKGDVKWL----KQLGVNFPDNIKTVDTSTLFSITQGKNGNSLKNALSA--V 225

Query: 151 TISHRSKHGALLDSHLLSDVYIKM 174
            I +   H A  D++    +   M
Sbjct: 226 DIPYSFLHNAGNDAYYT--LLAAM 247


>gi|332977738|gb|EGK14501.1| exonuclease [Desmospora sp. 8437]
          Length = 252

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 50/180 (27%), Gaps = 38/180 (21%)

Query: 10  IVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68
           + FD ETTGL     + I   G             F  FL                    
Sbjct: 103 LFFDTETTGLGTGAGNLIFLYGVGYYRKDYFIVEHF--FL-------------------P 141

Query: 69  FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128
            ++ +P+      +F +  +  +     +   FD   +           ++     D L 
Sbjct: 142 RVEGEPAL---LEDFLELVSSFSVVVSYNGKAFDWNQLKTRATVHRIPWVEEKIHCDLLY 198

Query: 129 IARRKHPS--SRNDLNSL-CKRYGITISHRSKHGALLDS--HLLSDVYIKMMVGGSQINF 183
            +RR          L  +   R G+          L D   HL  ++Y   + GG     
Sbjct: 199 PSRRLWRELLPSCRLQEVEAARLGVER--------LDDVPGHLAPELYFDYLKGGDPAGM 250


>gi|254823411|ref|ZP_05228412.1| cyclopropane-fatty-acyl-phospholipid synthase 1 [Mycobacterium
           intracellulare ATCC 13950]
          Length = 276

 Score = 36.0 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 19  LDSKNDRIIEIGAVELLDYSKTNRTF---QVFLCPNGRKNSPEALKLHGITDEFLKDKPS 75
            D   DRI+ IGA E   + + +  F      L  +G         LH    E ++    
Sbjct: 115 FDEPVDRIVSIGAFEHFGHERYDAFFTMAHDLLPDDGVMLLHTITGLH--PTEMVERGMP 172

Query: 76  FSSIFSEFWDFF 87
            S  F+ F  F 
Sbjct: 173 ISFTFARFIKFI 184


>gi|15229910|ref|NP_190010.1| CCR4-NOT transcription complex protein, putative [Arabidopsis
           thaliana]
 gi|75335619|sp|Q9LXM4|CAF1H_ARATH RecName: Full=Putative CCR4-associated factor 1 homolog 8
 gi|7649375|emb|CAB88992.1| CCR4-associated factor 1-like protein [Arabidopsis thaliana]
 gi|332644359|gb|AEE77880.1| putative CCR4-associated factor 1-8 [Arabidopsis thaliana]
          Length = 239

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 73/208 (35%), Gaps = 43/208 (20%)

Query: 8   RKIVFDIE-------TT------------GLDSKNDRIIEIGAVELLDYSKTNRTFQVFL 48
           R I  D E       TT                   ++I++G        +   T+++  
Sbjct: 12  RFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRIGGTWEINF 71

Query: 49  CPNGRKN--SPEALKL---HG-----ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN 98
              G  +  + ++++    +G     I +E ++ +  FS +F         +N  W+  +
Sbjct: 72  SDFGVDDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKK--TRRNITWVTFH 129

Query: 99  AKFDVGFINAELQRINKDPLDP----------SRIIDTLSIA-RRKHPSSRNDLNSLCKR 147
             +D+ ++                          + D   +A R +  SSR  L +L   
Sbjct: 130 GSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGLSSRLGLETLAHE 189

Query: 148 YGITISHRSKHGALLDSHLLSDVYIKMM 175
           +G+     + H A  ++ L + V+ K++
Sbjct: 190 FGL-NRVGTAHHAGSNNELTAMVFAKVL 216


>gi|331672505|ref|ZP_08373295.1| exodeoxyribonuclease VIII [Escherichia coli TA280]
 gi|331070411|gb|EGI41776.1| exodeoxyribonuclease VIII [Escherichia coli TA280]
          Length = 259

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 30/185 (16%)

Query: 12  FDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEF- 69
            D+ET G +  N  I+ IGAV       +   TF + +      ++       G T E+ 
Sbjct: 78  IDLETMGTN-TNAPIVVIGAVFFDPQTGEIGPTFYIVISLVDAMDTGAVSD--GSTIEWW 134

Query: 70  -----------LKDKPSFSSIFSEFWDFF----NEQNAEWIAHNAKFDVGFINAELQRIN 114
                      L D+        +F  F     +E+  +   + A FD   +    +R+ 
Sbjct: 135 LAQSSEARSAILVDQVKLVDALIQFRAFINEYSDEKFVQVWGNGATFDNAILRTSYERL- 193

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD----V 170
            D   P R  +   +          D ++   R  I      +H AL D+   +     +
Sbjct: 194 -DIPCPWRYHNDRDVRTIVELGKTIDFDA---RTVIPFEG-VRHNALDDARHQAKYVSAI 248

Query: 171 YIKMM 175
           + K++
Sbjct: 249 WQKLI 253


>gi|331685797|ref|ZP_08386378.1| putative exonuclease VIII, ds DNA exonuclease encoded by prophage
           [Escherichia coli H299]
 gi|331076994|gb|EGI48211.1| putative exonuclease VIII, ds DNA exonuclease encoded by prophage
           [Escherichia coli H299]
          Length = 190

 Score = 36.0 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 59/187 (31%), Gaps = 46/187 (24%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC----------PNGRKN 55
           M  ++ D+ET G + K+  I+ IGAV    +     + F   +           P+G   
Sbjct: 1   MNNLMIDLETMGKN-KDAPIVSIGAVFFTPETGDIGQEFYAVVSLDSAMKQGATPDGDTI 59

Query: 56  ------SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVG 104
                 SPEA     I D       S S   SE   F N      +  +   + A FD  
Sbjct: 60  LWWLKQSPEARAAICIDDTL-----SISDALSELNHFINRHADNTKYLKVWGNGATFDNV 114

Query: 105 FINAELQRIN-KDPLDPSRIID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            +    +R     P       D     TL  +    P           +  +      +H
Sbjct: 115 ILRGAYERAGQICPWAYWNDHDVRTIVTLGRSIGFDP-----------KMDMPFDGE-RH 162

Query: 159 GALLDSH 165
            AL D+ 
Sbjct: 163 NALADAR 169


>gi|326529009|dbj|BAK00898.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 305

 Score = 36.0 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 58/178 (32%), Gaps = 14/178 (7%)

Query: 1   MIRKNKMRKIVFDIETT---GLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNS 56
           M    K   + FD+E        S   R++E  A+ +         ++   +  +     
Sbjct: 1   MATTKKREMVFFDVEAAQPPSCPSGECRLVEFAAILVCPRRLVEVSSYSTLIRQDHPDAD 60

Query: 57  PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINK 115
             +     +        P+F  +F + ++  + +   W  H   +     +         
Sbjct: 61  ENSS----VLLSAASAAPAFEDVFPDIFELLDGR--VWAGHGIRRSGCARVRGAFAAFGL 114

Query: 116 DPLDPSRIIDTLS--IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              +P  ++D+L   +A+        +  +L + +G+ +        L  + L  DV 
Sbjct: 115 PAPEPVGVVDSLDVLVAQGCF-GQDEEAAALAEHFGVGVRRARGLRCLDGARLSLDVL 171


>gi|297812341|ref|XP_002874054.1| hypothetical protein ARALYDRAFT_489075 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319891|gb|EFH50313.1| hypothetical protein ARALYDRAFT_489075 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 274

 Score = 36.0 bits (82), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 22/144 (15%)

Query: 51  NGRKNSPEALKL---HGIT-----DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102
               ++P++++L   HGI       E +K    F+ +          ++  W+  ++ +D
Sbjct: 110 ERDPHAPDSIELLRRHGIDFERNRREGVKSG-RFAELMMS-SGLICNESVSWVTFHSAYD 167

Query: 103 VGFINAELQRINKD-----------PLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGI 150
            G++   L R                    R+ D   I R          L+ + +   +
Sbjct: 168 FGYLVKILTRRELPVALREFLRLLRAFFGERVYDVKHIMRFCEQRRLYGGLDRVARSLEV 227

Query: 151 TISHRSKHGALLDSHLLSDVYIKM 174
             +    H A  DS L    + +M
Sbjct: 228 NRAVGKCHQAGSDSLLTWQAFQRM 251


>gi|307170231|gb|EFN62599.1| Exonuclease GOR [Camponotus floridanus]
          Length = 144

 Score = 36.0 bits (82), Expect = 5.3,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 9/109 (8%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64
           NK R    D E          + +I  ++L      N     F+ P+         +  G
Sbjct: 27  NKYRICALDCEMC-YTEHGFELTKITVIDLEGKIVCND----FVTPDSEILD--YSRFSG 79

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113
           +T+E LK   S   I  +     + +    + HN   D   ++   +++
Sbjct: 80  VTEEHLKQN-SLQQIQKKLLTLISAE-TIVVGHNLASDFRALHIFHEKV 126


>gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
 gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
          Length = 956

 Score = 36.0 bits (82), Expect = 5.3,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 17/154 (11%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS---KTNRTFQVFLCPNGRK----- 54
           +  +   I  D ET  LD+    ++ I    L +                   +      
Sbjct: 350 KIQQANLIAVDTETDSLDAMTAELVGISF-GLENGEACYIPLAHVHEVAEAEEQAQADLF 408

Query: 55  NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114
             P+A      +   L D+ +     +         +   I  N K+D+        ++ 
Sbjct: 409 AEPKATGKT--SWHRLPDQLNREDCLARLKPVLENADIRKIGQNLKYDLTIFANHGIQVQ 466

Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY 148
                     DT+  +   + + R++++ L +RY
Sbjct: 467 GVAF------DTMLESYVLNSTGRHNMDDLAERY 494


>gi|312216255|emb|CBX96206.1| hypothetical protein [Leptosphaeria maculans]
          Length = 366

 Score = 36.0 bits (82), Expect = 5.3,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 14/148 (9%)

Query: 90  QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR---RKHPSSRN-DLNSLC 145
           Q    I H    +   +        +      ++IDT  +AR    K P+  N  L  L 
Sbjct: 149 QPIILIGHAVDNEFEVLERTFGVDLRSFGTIIKVIDTQEMARNAGIKGPNGPNIGLRDLL 208

Query: 146 KRYGITISHRSKHGALLDSH--LLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNI 203
             + + + +   H A  D+   +++ V + +      +  G   + + F +E +  V ++
Sbjct: 209 AYFNVKVPN--LHTAGNDAAGTMIAAVLLGLQSIMYPLKDG-PPSANLFGREIQDVVDDV 265

Query: 204 SLLKRDKPLFT-----RITKEELDEHDK 226
             L + +P  T       T+ + D H +
Sbjct: 266 MTLAKSRPAPTWGQPLFCTRCDRDNHSR 293


>gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
 gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
          Length = 927

 Score = 36.0 bits (82), Expect = 5.3,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 44/149 (29%), Gaps = 30/149 (20%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           +  D ET  LD    +I+ +                  + P      P A   H  +   
Sbjct: 353 VALDTETNSLDELRAQIVGL---------------SFSVEPGAAAYIPLA---H--SGPE 392

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
             ++    ++      +  + +   +  + K+D           N          DT+  
Sbjct: 393 APEQLPLDTVLERLKPWLEDASRPKLGQHVKYDRHVF------ANHGIDVRGYAHDTMLQ 446

Query: 130 ARRKHPSSRNDLNSLCKRY----GITISH 154
           +        ++L SL +R+    GI+   
Sbjct: 447 SYVLEVHRPHNLASLAERHTGRTGISYED 475


>gi|218961931|ref|YP_001741706.1| hypothetical protein CLOAM1664 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730588|emb|CAO81500.1| conserved hypothetical protein [Candidatus Cloacamonas
           acidaminovorans]
          Length = 399

 Score = 36.0 bits (82), Expect = 5.4,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 28/144 (19%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
            + K   ++ D+ETTGL S       IG    ++             P    NS      
Sbjct: 78  ERKKEDILILDLETTGLRSNGIFAFMIGLGYYVNEQFIVEQI-FLPDPEAEVNS------ 130

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDPS 121
                            F    +  NE++     +   FD+  + + L        L   
Sbjct: 131 -----------------FDRLLELVNEKSLLITFNGKTFDIPVLESRLLYHQIWLNLRAM 173

Query: 122 RIIDTLSIARRKHPSSRNDLNSLC 145
             +D L +ARR     +N L S  
Sbjct: 174 EHLDLLHLARRLW---KNKLPSCA 194


>gi|239607406|gb|EEQ84393.1| CAF1 family ribonuclease [Ajellomyces dermatitidis ER-3]
          Length = 533

 Score = 36.0 bits (82), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 27/138 (19%)

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI- 123
           I D    D  + S+   +       +    + HN   D+            D ++  +  
Sbjct: 218 IPDSATVDAEALSNYSDDLRSKLKSRQPVLVGHNLFTDLINFYKCFIGNLPDRIEDFKEA 277

Query: 124 --------IDTLSIARRKHPS--SRNDL----NSLC-----KRYGITISH------RSKH 158
                   IDT  +A     S    + L    ++L      K + I   H      +  H
Sbjct: 278 IHSLFPLVIDTKYMATHNCSSVTPSSSLAEINDNLAMRKTPKIF-IDPEHDKYVGQKPLH 336

Query: 159 GALLDSHLLSDVYIKMMV 176
            A  DS L + V IK+  
Sbjct: 337 EAGYDSLLTAKVLIKLTA 354


>gi|317051804|ref|YP_004112920.1| DNA polymerase I [Desulfurispirillum indicum S5]
 gi|316946888|gb|ADU66364.1| DNA polymerase I [Desulfurispirillum indicum S5]
          Length = 881

 Score = 36.0 bits (82), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 31/147 (21%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69
           I  D ETT   +    ++ I            + + V                H      
Sbjct: 318 IAIDTETTSEHAVEADLVGISIA------IGEQAWYV-------PIDHAHTDTH------ 358

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
            ++ P+      +     +  +   +  N K+D+  +           L   R+ DT+  
Sbjct: 359 -RNMPTAD--VQKLITALDRSDLLLVGQNIKYDLIVLQRHDM-----ALPQPRLFDTMIA 410

Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHR 155
           +     + R + L+ L   +   +SH 
Sbjct: 411 SYLLDANRRSHGLDQLAVEF---LSHE 434


>gi|195472605|ref|XP_002088590.1| GE18651 [Drosophila yakuba]
 gi|194174691|gb|EDW88302.1| GE18651 [Drosophila yakuba]
          Length = 914

 Score = 36.0 bits (82), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 54/147 (36%), Gaps = 20/147 (13%)

Query: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS--- 137
           ++  +      +    HN  F   F+ ++++R  +  ++ +R+ +    AR   PS    
Sbjct: 711 AQLLEEVGAAGSAQGRHNLAFLSAFLRSDVERCLEILIETNRLPEAAFFARTYLPSQMSK 770

Query: 138 -----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRF 192
                R  L  + ++ G +++          +    +++  +   G  +       E+R 
Sbjct: 771 IVELWREKLGKVNEKAGQSLA--------DPAQYT-NLFPGL---GDALRVEQHLQEERA 818

Query: 193 FKEEKKTVPNISLLKRDKPLFTRITKE 219
            K   +   ++ L    +PL   +  E
Sbjct: 819 RKAPARQAVHLPLNSERQPLQELLAAE 845


>gi|325116088|emb|CBZ51642.1| hypothetical protein NCLIV_014360 [Neospora caninum Liverpool]
          Length = 1037

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 26/63 (41%)

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + DKP FS     F +F  E   + +AH    +   +   L+ +          +D+ ++
Sbjct: 422 VVDKPPFSDAPRTFVEFIVEPLYKLVAHVVAEEQPTLQPTLEELGIYLKKDDYKLDSRTL 481

Query: 130 ARR 132
            ++
Sbjct: 482 LKK 484


>gi|194186874|ref|YP_002004529.1| DNA polymerase [Bacillus phage phi29]
 gi|190888840|gb|ACE96023.1| DNA polymerase [Bacillus phage phi29]
          Length = 572

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 80  FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             EF  +  +  A+   HN KFD  FI   L+R     
Sbjct: 41  LDEFMAWVLKVQADLYFHNLKFDGAFIINWLERNGFKW 78


>gi|118851|sp|P06950|DPOL_BPPZA RecName: Full=DNA polymerase; AltName: Full=Early protein GP2
 gi|216051|gb|AAA88478.1| gene 2 product [Bacillus phage PZA]
 gi|224741|prf||1112171E ORF 2
          Length = 572

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 80  FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             EF  +  +  A+   HN KFD  FI   L+R     
Sbjct: 41  LDEFMAWVLKVQADLYFHNLKFDGAFIINWLERNGFKW 78


>gi|118849|sp|P03680|DPOL_BPPH2 RecName: Full=DNA polymerase; AltName: Full=Early protein GP2
 gi|15667|emb|CAA24480.1| unnamed protein product [Bacillus phage phi29]
          Length = 575

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 80  FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             EF  +  +  A+   HN KFD  FI   L+R     
Sbjct: 44  LDEFMAWVLKVQADLYFHNLKFDGAFIINWLERNGFKW 81


>gi|15734|emb|CAA37450.1| unnamed protein product [Bacillus phage phi29]
          Length = 575

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 80  FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             EF  +  +  A+   HN KFD  FI   L+R     
Sbjct: 44  LDEFMAWVLKVQADLYFHNLKFDGAFIINWLERNGFKW 81


>gi|15732|emb|CAA37451.1| unnamed protein product [Bacillus phage phi29]
          Length = 575

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 80  FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             EF  +  +  A+   HN KFD  FI   L+R     
Sbjct: 44  LDEFMAWVLKVQADLYFHNLKFDGAFIINWLERNGFKW 81


>gi|317182000|dbj|BAJ59784.1| hypothetical protein HPF57_0710 [Helicobacter pylori F57]
          Length = 270

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 25/131 (19%)

Query: 24  DRIIEIGAVELLDYS---KTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80
             II I AV   DY    K     Q                             S   + 
Sbjct: 52  HEIISIAAVIGDDYGKFIKVGNFGQKHENKEDFA--------------------SEKELL 91

Query: 81  SEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN 139
            +F+ +FNE+    I+ N + FD+  +  +  + N          +     R ++    +
Sbjct: 92  EDFFKYFNEKQPRLISFNGRGFDMPLLTLKALKYNLTLDAFYNQENKWENYRARYSEQFH 151

Query: 140 -DLNSLCKRYG 149
            DL      YG
Sbjct: 152 LDLMDSLSHYG 162


>gi|317180431|dbj|BAJ58217.1| hypothetical protein HPF32_0635 [Helicobacter pylori F32]
          Length = 270

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 25/131 (19%)

Query: 24  DRIIEIGAVELLDYS---KTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80
             II I AV   DY    K     Q                             S   + 
Sbjct: 52  HEIISIAAVIGDDYGKFIKVGNFGQKHENKEDFA--------------------SEKELL 91

Query: 81  SEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN 139
            +F+ +FNE+    I+ N + FD+  +  +  + N          +     R ++    +
Sbjct: 92  EDFFKYFNEKQPRLISFNGRGFDMPLLTLKALKYNLTLDAFYNQENKWENYRARYSEQFH 151

Query: 140 -DLNSLCKRYG 149
            DL      YG
Sbjct: 152 LDLMDSLSHYG 162


>gi|308063523|gb|ADO05410.1| hypothetical protein HPSAT_03360 [Helicobacter pylori Sat464]
          Length = 270

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 25/131 (19%)

Query: 24  DRIIEIGAVELLDYS---KTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80
             II I AV   DY    K     Q                             S   + 
Sbjct: 52  HEIISIAAVIGDDYGKFIKVGNFGQKHENKEDFA--------------------SEKELL 91

Query: 81  SEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN 139
            +F+ +FNE+    I+ N + FD+  +  +  + N          +     R ++    +
Sbjct: 92  EDFFKYFNEKQPRLISFNGRGFDMPLLTLKALKYNLTLDAFYNQENKWENYRARYSEQFH 151

Query: 140 -DLNSLCKRYG 149
            DL      YG
Sbjct: 152 LDLMDSLSHYG 162


>gi|315586637|gb|ADU41018.1| polysaccharide biosynthesis protein [Helicobacter pylori 35A]
          Length = 270

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 25/131 (19%)

Query: 24  DRIIEIGAVELLDYS---KTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80
             II I AV   DY    K     Q                             S   + 
Sbjct: 52  HEIISIAAVIGDDYGKFIKVGNFGQKHENKEDFA--------------------SEKELL 91

Query: 81  SEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN 139
            +F+ +FNE+    I+ N + FD+  +  +  + N          +     R ++    +
Sbjct: 92  EDFFKYFNEKQPRLISFNGRGFDMPLLTLKALKYNLTLDAFYNQENKWENYRARYSEQFH 151

Query: 140 -DLNSLCKRYG 149
            DL      YG
Sbjct: 152 LDLMDSLSHYG 162


>gi|297379883|gb|ADI34770.1| Hypothetical protein HPV225_0693 [Helicobacter pylori v225d]
          Length = 276

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 25/131 (19%)

Query: 24  DRIIEIGAVELLDYS---KTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80
             II I AV   DY    K     Q                             S   + 
Sbjct: 58  HEIISIAAVIGDDYGKFIKVGNFGQKHENKEDFA--------------------SEKELL 97

Query: 81  SEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN 139
            +F+ +FNE+    I+ N + FD+  +  +  + N          +     R ++    +
Sbjct: 98  EDFFKYFNEKQPRLISFNGRGFDMPLLTLKALKYNLTLDAFYNQENKWENYRARYSEQFH 157

Query: 140 -DLNSLCKRYG 149
            DL      YG
Sbjct: 158 LDLMDSLSHYG 168


>gi|217033684|ref|ZP_03439111.1| hypothetical protein HP9810_5g26 [Helicobacter pylori 98-10]
 gi|216943873|gb|EEC23310.1| hypothetical protein HP9810_5g26 [Helicobacter pylori 98-10]
          Length = 270

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 25/131 (19%)

Query: 24  DRIIEIGAVELLDYS---KTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80
             II I AV   DY    K     Q                             S   + 
Sbjct: 52  HEIISIAAVIGDDYGKFIKVGNFGQKHENKEDFA--------------------SEKELL 91

Query: 81  SEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN 139
            +F+ +FNE+    I+ N + FD+  +  +  + N          +     R ++    +
Sbjct: 92  EDFFKYFNEKQPRLISFNGRGFDMPLLTLKALKYNLTLDAFYNQENKWENYRARYSEQFH 151

Query: 140 -DLNSLCKRYG 149
            DL      YG
Sbjct: 152 LDLMDSLSHYG 162


>gi|188527467|ref|YP_001910154.1| hypothetical protein HPSH_03425 [Helicobacter pylori Shi470]
 gi|188143707|gb|ACD48124.1| hypothetical protein HPSH_03425 [Helicobacter pylori Shi470]
          Length = 270

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 25/131 (19%)

Query: 24  DRIIEIGAVELLDYS---KTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80
             II I AV   DY    K     Q                             S   + 
Sbjct: 52  HEIISIAAVIGDDYGKFIKVGNFGQKHENKEDFA--------------------SEKELL 91

Query: 81  SEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN 139
            +F+ +FNE+    I+ N + FD+  +  +  + N          +     R ++    +
Sbjct: 92  EDFFKYFNEKQPRLISFNGRGFDMPLLTLKALKYNLTLDAFYNQENKWENYRARYSEQFH 151

Query: 140 -DLNSLCKRYG 149
            DL      YG
Sbjct: 152 LDLMDSLSHYG 162


>gi|119776164|ref|YP_928904.1| oligoribonuclease [Shewanella amazonensis SB2B]
 gi|166216584|sp|A1SA28|ORN_SHEAM RecName: Full=Oligoribonuclease
 gi|119768664|gb|ABM01235.1| oligoribonuclease [Shewanella amazonensis SB2B]
          Length = 181

 Score = 35.6 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 45/152 (29%)

Query: 2   IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE--A 59
           +  +    I  D+E TGL+ + DRI+EI                  +         +   
Sbjct: 1   MAADAKNLIWIDLEMTGLEPEVDRILEIA---------------TLVTDQDLNILAQGPV 45

Query: 60  LKLHGITDEFLKDKP---------------------SFSSIFSEFWDFFN----EQNAEW 94
           + +H  +DE L                         + +   ++  DF +    +  +  
Sbjct: 46  IAIHQ-SDEVLAAMDDWNQQHHGASGLIERVRSSQYTEADAIAQTIDFLSLHVPKGVSPM 104

Query: 95  IAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
             ++   D  F+N  ++ +  +     R ID 
Sbjct: 105 CGNSVGQDRRFLNKYMREL--EDFFHYRNIDV 134


>gi|160898852|ref|YP_001564434.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
 gi|160364436|gb|ABX36049.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
          Length = 704

 Score = 35.6 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 75  SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR-RK 133
           +   +  E +   ++ ++E  AHNA FD   I+    + +   +   R   ++++A    
Sbjct: 49  TAEEMHDELYHAMDDADSEAWAHNAFFDRT-IHNGPAQAHLPRIADERWRCSMAMALSHA 107

Query: 134 HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
            P     L  LC+   +          L D   L  ++
Sbjct: 108 LPGG---LADLCRVLKVPADMAK----LADGKKLVRLF 138


>gi|146305663|ref|YP_001186128.1| oligoribonuclease [Pseudomonas mendocina ymp]
 gi|166216580|sp|A4XPY0|ORN_PSEMY RecName: Full=Oligoribonuclease
 gi|145573864|gb|ABP83396.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina
           ymp]
          Length = 180

 Score = 35.6 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 55/179 (30%), Gaps = 35/179 (19%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK---------TNRTFQVFLCPNGR 53
            +N    I  D+E TGL+ + D IIE+  +                 +++ +        
Sbjct: 1   MQNPNNLIWIDLEMTGLEPERDVIIEMATIVTDSELNVLAEGPVIAIHQSDETL-----A 55

Query: 54  KNSPEALKLH---GITDEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105
                  + H   G+T + +++       + +   +    +  +  +    ++   D  F
Sbjct: 56  GMDEWNTRTHGQSGLT-QRVRESRIDTATAEAQTIAFLEQWVPKGKSPICGNSIGQDRRF 114

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +   +  +          + TL I      P  ++                + H AL D
Sbjct: 115 LYKYMPALEAYFHYRYLDVSTLKILAGMWAPQVKDS-----------FQKTATHQALDD 162


>gi|304436359|ref|ZP_07396335.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370628|gb|EFM24277.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 641

 Score = 35.6 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 9/82 (10%)

Query: 77  SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-------DPLDPSRIIDTLSI 129
             I  E  D   + +    A NA F+   ++  L  +           L P     T+  
Sbjct: 53  ERIPQEILDALADDSVIKWAFNANFERVCLSRYLSDLGMLHTTERAHFLSPRSWRCTMVW 112

Query: 130 ARRKHPSSRNDLNSLCKRYGIT 151
           +   +      L  + +  G+ 
Sbjct: 113 S--AYMGLPLSLAVVARVLGLE 132


>gi|221484625|gb|EEE22919.1| conserved hypothetical protein [Toxoplasma gondii GT1]
 gi|221504817|gb|EEE30482.1| U5 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
           VEG]
          Length = 1008

 Score = 35.6 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 26/63 (41%)

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + DKP FS     F +F  E   + +AH    +   +   L+ +          +D+ ++
Sbjct: 393 VVDKPPFSDAPRTFVEFIMEPLYKLVAHVVAEEQPTLQPTLEELGIYLKKDDYKLDSRTL 452

Query: 130 ARR 132
            ++
Sbjct: 453 LKK 455


>gi|237839895|ref|XP_002369245.1| U5 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
           ME49]
 gi|211966909|gb|EEB02105.1| U5 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
           ME49]
          Length = 1008

 Score = 35.6 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 26/63 (41%)

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129
           + DKP FS     F +F  E   + +AH    +   +   L+ +          +D+ ++
Sbjct: 393 VVDKPPFSDAPRTFVEFIMEPLYKLVAHVVAEEQPTLQPTLEELGIYLKKDDYKLDSRTL 452

Query: 130 ARR 132
            ++
Sbjct: 453 LKK 455


>gi|327352392|gb|EGE81249.1| CAF1 family ribonuclease [Ajellomyces dermatitidis ATCC 18188]
          Length = 493

 Score = 35.6 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 27/138 (19%)

Query: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI- 123
           I D    D  + S+   +       +    + HN   D+            D ++  +  
Sbjct: 178 IPDSATVDAEALSNYSDDLRSKLKSRQPVLVGHNLFTDLINFYKCFIGNLPDRIEDFKEA 237

Query: 124 --------IDTLSIARRKHPS--SRNDL----NSLC-----KRYGITISH------RSKH 158
                   IDT  +A     S    + L    ++L      K + I   H      +  H
Sbjct: 238 IHSLFPLVIDTKYMATHNCSSVTPSSSLAEINDNLAMRKTPKIF-IDPEHDKYVGEKPLH 296

Query: 159 GALLDSHLLSDVYIKMMV 176
            A  DS L + V IK+  
Sbjct: 297 EAGYDSLLTAKVLIKLTA 314


>gi|325274003|ref|ZP_08140161.1| DNA polymerase I [Pseudomonas sp. TJI-51]
 gi|324100856|gb|EGB98544.1| DNA polymerase I [Pseudomonas sp. TJI-51]
          Length = 915

 Score = 35.6 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 38/154 (24%)

Query: 4   KNKMRKI---VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
             K+R+     FD ETTGLD++  +++ +                  + P+     P A 
Sbjct: 327 LEKLRQAPLFAFDTETTGLDAQKAQLVGL---------------SFAVAPHEAAYVPLA- 370

Query: 61  KLHGITDEFLKDKPS---FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
                     +  P+     ++         +     +  NAK+D+  +       N  P
Sbjct: 371 -------HDYEGAPAQLDRDAVLLALKPLLEDPAKAKVGQNAKYDINIL------ANGSP 417

Query: 118 LDPSRII--DTLSIARRKHPSS-RNDLNSLCKRY 148
               R +  DT+  +   + ++ R+D++SL ++Y
Sbjct: 418 AIAMRGVAYDTMLESYVLNSTATRHDMDSLAQKY 451


>gi|308806171|ref|XP_003080397.1| 3'-5' exonuclease (ISS) [Ostreococcus tauri]
 gi|116058857|emb|CAL54564.1| 3'-5' exonuclease (ISS) [Ostreococcus tauri]
          Length = 579

 Score = 35.6 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 52/179 (29%), Gaps = 29/179 (16%)

Query: 10  IVFDIETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
           +  D E  G+    +      +  V+       N     ++ P G + +     L G   
Sbjct: 317 VALDCEFVGVGETGEEHACARVCIVDSKGKVLLN----TWVNP-GVEVTDYRETLTGAKP 371

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQ-----------NAEWIAHNAKFDVGFINAELQRINKD 116
           E L+  P    +  +  +    +               + H+ + D+  +N   ++    
Sbjct: 372 EILERAPPLEHVRGKVINILIGKAPTTRERHVGVRHLLVGHSVEHDLEVLNITWKK---- 427

Query: 117 PLDPSRIIDTLSIA-RRKHPSSRNDLNSLC-KRYGITI-SHRSKHGALLDSHLLSDVYI 172
                   DT       +H      L +L  +  G  I      H   +D+     +Y 
Sbjct: 428 ----GLQRDTAQFPLYLRHTHLPFKLRTLVEEHLGERIQEKGEIHDPEVDARCAMRLYQ 482


>gi|50086081|ref|YP_047591.1| hypothetical protein ACIAD3070 [Acinetobacter sp. ADP1]
 gi|49532057|emb|CAG69769.1| conserved hypothetical protein [Acinetobacter sp. ADP1]
          Length = 278

 Score = 35.6 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 62/182 (34%), Gaps = 42/182 (23%)

Query: 7   MRK--IVFDIET-TGLDSKND--------RIIEIGAVELLDYSKTNRTF-----QVFLCP 50
           MR   +VFDIET T L +             +E   ++L    ++   F        +C 
Sbjct: 2   MRFPTLVFDIETLTDLKAGAHLYHLDLPEADLEQALIKLR-RQESGMDFQRLALHEIVCI 60

Query: 51  NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAE 109
           +G     +  KL   + E L +K     I ++F   F++++   ++ N ++FD+  I   
Sbjct: 61  SGLWIDEQGFKLFSFSQENLSEK----EILTKFLSIFDKRHPTLVSWNGSQFDLPVILFR 116

Query: 110 LQRINKDPLD--------------------PSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149
                                           R ID + +    +  +   L+ +    G
Sbjct: 117 AMYHGLSAPSLFDQGELDQQKRYNNYQNRYHHRHIDLMDVMAMFNGRNFQKLDDVACVLG 176

Query: 150 IT 151
           + 
Sbjct: 177 LP 178


>gi|127510941|ref|YP_001092138.1| LamB/YcsF family protein [Shewanella loihica PV-4]
 gi|126636236|gb|ABO21879.1| LamB/YcsF family protein [Shewanella loihica PV-4]
          Length = 242

 Score = 35.6 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 20/100 (20%)

Query: 139 NDLNSLCKRYGITISHRSKHGALL-DSH---LLSDVYIK-----------MMVGGSQI-- 181
           N L ++C   G+ + H   HGAL  D+     L  + I+           M++ GS +  
Sbjct: 92  NALKAVCDELGVDLHHVKPHGALYNDAAQDPALGRILIRVIETINPTLKLMILAGSPLVM 151

Query: 182 ---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218
                G +  E+ F          ++   +   L     K
Sbjct: 152 QARRAGLEVIEEAFADRGYLADGRLAPRSQPGALIEDAQK 191


>gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
 gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
          Length = 905

 Score = 35.6 bits (81), Expect = 6.4,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 75/240 (31%), Gaps = 55/240 (22%)

Query: 3   RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62
           R      +  D ETT LD    R++ +                 ++ P   +    A +L
Sbjct: 325 RLQNASLVALDTETTSLDQMQARLVGLSLA-------VEPGVACYI-PVAHRGPDGATQL 376

Query: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122
                         + + +    +  + +   + H+AK+D      E   +         
Sbjct: 377 ------------PKAEVLARLKPWLEDASRAKLLHHAKYDAHVFANEGIALAGITD---- 420

Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRY----GITIS-----------------HRSKHGAL 161
             DT+  A          LN L +RY    GI+                    ++ H A 
Sbjct: 421 --DTMLQAYVLESHRGVGLNDLAQRYLGRSGISYEDLCGKGAKQIGFDEVAVDKAGHYAA 478

Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
            D+     +   ++      N G     DR ++ E K    ++ ++R+     ++  EEL
Sbjct: 479 EDADFTLQL-HHVLRPMVAANEGL----DRIYQLEIKVSAVLTTIERNG---VKVDAEEL 530


>gi|197281705|gb|ACH57069.1| DNA polymerase [Bacillus phage Nf]
          Length = 572

 Score = 35.6 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 80  FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             EF  +  E  A+   HN KFD  FI   L++     
Sbjct: 41  LDEFMQWVMEIQADLYFHNLKFDGAFIVNWLEQHGFKW 78


>gi|125553974|gb|EAY99579.1| hypothetical protein OsI_21555 [Oryza sativa Indica Group]
          Length = 335

 Score = 35.6 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 141 LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L  +    G+  +    H A  DS L SDV   M+
Sbjct: 272 LEHVAAALGVHRAAGRAHNAGSDSLLTSDVLHAMV 306


>gi|118848|sp|P19894|DPOL_BPM2 RecName: Full=DNA polymerase
 gi|215509|gb|AAA32368.1| DNA polymerase [Bacillus phage M2]
          Length = 572

 Score = 35.6 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 80  FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             EF  +  E  A+   HN KFD  FI   L++     
Sbjct: 41  LDEFMQWVMEIQADLYFHNLKFDGAFIVNWLEQHGFKW 78


>gi|22855149|ref|NP_690635.1| DNA polymerase [Bacillus phage B103]
 gi|6015017|sp|Q37882|DPOL_BPB03 RecName: Full=DNA polymerase; AltName: Full=Early protein GP2
 gi|1429230|emb|CAA67649.1| DNA polymerase [Bacillus phage B103]
          Length = 572

 Score = 35.6 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 15/38 (39%)

Query: 80  FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             EF  +  E  A+   HN KFD  FI   L+      
Sbjct: 41  LDEFMQWVMEIQADLYFHNLKFDGAFIVNWLEHHGFKW 78


>gi|167564473|ref|ZP_02357389.1| hypothetical protein BoklE_18091 [Burkholderia oklahomensis EO147]
 gi|167571623|ref|ZP_02364497.1| hypothetical protein BoklC_17398 [Burkholderia oklahomensis C6786]
          Length = 218

 Score = 35.6 bits (81), Expect = 6.8,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 71/217 (32%), Gaps = 27/217 (12%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNS---------P 57
            +  D+E  G       ++   +    +  +   TF   L   P    +          P
Sbjct: 13  YVSTDVEADGPIPGPHSMLSFASAAFTEDKQLIATFSANLELLPGAAPHPVQDAWWKTQP 72

Query: 58  EALKLHGITDEFLKDKPSFSSIF-SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NK 115
           EA          L+  P  + +  +E+ +    +   ++A  A FD  F+   + R   +
Sbjct: 73  EAWAAC---RRDLQ-APEAALVAYAEWVEALPGKP-VFVAMPAGFDFTFMFWYMMRFAGR 127

Query: 116 DPLDPSR-IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG--ALLDSHLLSDVYI 172
            P   S   I TL+ A    P  +    ++  R+         H   AL D+     ++ 
Sbjct: 128 CPFSWSALDIKTLAFALTGLPYRK----AIKPRFPKHWFDDHPHTHIALDDAIEQGALFC 183

Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
            M+     +     +      +E  ++  N +   R+
Sbjct: 184 NMLADLRAMQAAKASA--PLLEEADESAQNAADGPRN 218


>gi|159896602|ref|YP_001542849.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
 gi|159889641|gb|ABX02721.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
          Length = 953

 Score = 35.6 bits (81), Expect = 6.8,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 34/139 (24%)

Query: 10  IVFDIETTGLD---SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66
           ++FD+ET  L+       +++ I                 ++ P G ++  +        
Sbjct: 355 LIFDVETNSLNLFSPVPAKVVGIALTHTAGCG-------WYI-PLGHRSGQQ-------- 398

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                     + + +     F++     +AHN KFD+  ++     I  D   P    DT
Sbjct: 399 -------LPIAEVVAALQPLFSDPQKAVVAHNGKFDMSALS----LIGLDV--PHLSFDT 445

Query: 127 LSIARRKHPSSRNDLNSLC 145
              A       R  L  L 
Sbjct: 446 AIAAALL--GKRQSLKDLA 462


>gi|118855|sp|P19822|DPOL_BPT5 RecName: Full=DNA polymerase
 gi|215988|gb|AAA32561.1| polymerase [Enterobacteria phage T5]
          Length = 829

 Score = 35.6 bits (81), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK-HPSSRNDL 141
                + +N   + HN KFD+ F    L           R+ DT+            + L
Sbjct: 179 LQKILDSENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGL 238

Query: 142 NSLCKRY 148
            SL  +Y
Sbjct: 239 KSLAMKY 245


>gi|55296464|dbj|BAD68660.1| putative CCR4-associated factor 1 [Oryza sativa Japonica Group]
          Length = 375

 Score = 35.6 bits (81), Expect = 7.0,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 141 LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175
           L  +    G+  +    H A  DS L SDV   M+
Sbjct: 312 LEHVAAALGVHRAAGRAHNAGSDSLLTSDVLHAMV 346


>gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
 gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
          Length = 920

 Score = 35.6 bits (81), Expect = 7.1,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 50/152 (32%), Gaps = 37/152 (24%)

Query: 8   RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGIT 66
           + +  D ETT  ++    ++ +                 ++  P  R+ + + + +    
Sbjct: 348 KILSLDTETTSTNAIEAELVGLSFA-------VEERKAFYVAIPANREEALKIVAI---- 396

Query: 67  DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126
                 KP +     E            +  N K+D+  +      +         + DT
Sbjct: 397 -----FKPLYED--PEILK---------VGQNIKYDIEVLRHYGVEVAGP------MFDT 434

Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
           +       P  R++++ + + Y   + +R+ H
Sbjct: 435 MIAHYLLQPELRHNMDYMAEVY---LGYRTVH 463


>gi|260845239|ref|YP_003223017.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009]
 gi|257760386|dbj|BAI31883.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009]
          Length = 687

 Score = 35.2 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLN 142
            ++           HN+ FD   +   + R+        R  DT+  A          L 
Sbjct: 57  LYEAIAAPETLLYFHNSHFDRTVLRYAMPRL---APPVERWRDTMVQA--LAHGLPGALG 111

Query: 143 SLCKRYGIT 151
            LC+  G+ 
Sbjct: 112 ELCEVLGVP 120


>gi|289812595|ref|ZP_06543224.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 61

 Score = 35.2 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 1/41 (2%)

Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177
             + L       G+ +  +  H AL D  +   +   +  G
Sbjct: 22  KWHKLVDAAAHEGVVVEGK-AHRALADCKMTLGLVRALAKG 61


>gi|115396528|ref|XP_001213903.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114193472|gb|EAU35172.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 186

 Score = 35.2 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 2  IRKNKMRKIVFDIETTGLDSKNDRIIEIGA 31
          + ++    +  D E TGLD + D+I++I  
Sbjct: 3  LTRSSDPLVWIDCEMTGLDPETDQILQICC 32


>gi|59897255|gb|AAX12050.1| DNA polymerase [Enterobacteria phage T5]
          Length = 825

 Score = 35.2 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK-HPSSRNDL 141
                + +N   + HN KFD+ F    L           R+ DT+            + L
Sbjct: 175 LQKILDSENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGL 234

Query: 142 NSLCKRY 148
            SL  +Y
Sbjct: 235 KSLAMKY 241


>gi|326633006|ref|YP_004306595.1| DNA polymerase [Enterobacteria phage SPC35]
 gi|321272200|gb|ADW80092.1| DNA polymerase [Enterobacteria phage SPC35]
          Length = 855

 Score = 35.2 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK-HPSSRNDL 141
                + +N   + HN KFD+ F    L           R+ DT+            + L
Sbjct: 205 LQKILDSENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGL 264

Query: 142 NSLCKRY 148
            SL  +Y
Sbjct: 265 KSLAMKY 271


>gi|313126085|ref|YP_004036355.1| hypothetical protein Hbor_13270 [Halogeometricum borinquense DSM
           11551]
 gi|312292450|gb|ADQ66910.1| hypothetical protein Hbor_13270 [Halogeometricum borinquense DSM
           11551]
          Length = 221

 Score = 35.2 bits (80), Expect = 7.5,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 16/131 (12%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELLD---YSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +  + FDIETTG + + D +   G    +    + +T       +    R      +++ 
Sbjct: 3   LELVAFDIETTGFEVR-DEVTVAGFAVPMGVRVFVQTGGRAARDVEAAVRDRVESHVQVS 61

Query: 64  GITDEFLKDKPSFSSIFSEF-WDFFNEQNAEWIAHNAK-----FDVGFINAELQRINKD- 116
               E +            F  +   E +   +A N +     FD+ F+   L R + + 
Sbjct: 62  THESERV-----LLEAVETFAAERLIESDVLLVAFNGELWRSGFDLPFLRTRLSRRDVEW 116

Query: 117 PLDPSRIIDTL 127
           P       D L
Sbjct: 117 PFREMPYADLL 127


>gi|46401858|ref|YP_006950.1| DNA polymerase [Enterobacteria phage T5]
 gi|45775036|gb|AAS77168.1| DNA polymerase [Enterobacteria phage T5]
          Length = 855

 Score = 35.2 bits (80), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK-HPSSRNDL 141
                + +N   + HN KFD+ F    L           R+ DT+            + L
Sbjct: 205 LQKILDSENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGL 264

Query: 142 NSLCKRY 148
            SL  +Y
Sbjct: 265 KSLAMKY 271


>gi|253996722|ref|YP_003048786.1| oligoribonuclease [Methylotenera mobilis JLW8]
 gi|253983401|gb|ACT48259.1| Exonuclease RNase T and DNA polymerase III [Methylotenera mobilis
           JLW8]
          Length = 186

 Score = 35.2 bits (80), Expect = 7.5,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 56/174 (32%), Gaps = 27/174 (15%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
            N+   I  D+E +GL   +DR++E+ AV             VF+     +        +
Sbjct: 8   TNQNNLIWLDMEMSGLLPDSDRVLELAAVVTDADLNVLAESPVFVVHQSDEVLDGMDAWN 67

Query: 64  -------GITDEFLKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQR 112
                  G+ D+      S +   ++  +F         +    ++   D  F+   +  
Sbjct: 68  KGAHGRSGLIDKVKASTLSEAEASAQMIEFLKAHVPSGKSPMCGNSICQDRRFMARYMPE 127

Query: 113 INKDPLDPSRIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  +     R +D       ARR  P   +                S+H AL D
Sbjct: 128 L--ESFFHYRNLDVSVFKELARRWKPEIYSG-----------FKKASRHEALAD 168


>gi|115385711|ref|XP_001209402.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114187849|gb|EAU29549.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 582

 Score = 35.2 bits (80), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 48/154 (31%), Gaps = 29/154 (18%)

Query: 75  SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-----------AELQRINKDPLDPSRI 123
           +     +       +     + HN   D+ ++            AE QR   +      +
Sbjct: 342 TVDEFSAHLLQRLKDSRPVLVGHNLFTDLIYLYRNFLGPLPETVAEFQRKVHELFPT--V 399

Query: 124 IDTLSIARRKHPS--SRNDLNSLCKRY--------GITISH------RSKHGALLDSHLL 167
           +DT  +A     S   ++ L  + +           I   H      +  H A  DS L 
Sbjct: 400 VDTKYMATHNCGSINPKSSLAEINESMMKLPTPAIKIHPQHFKYSATKVDHEAGYDSMLT 459

Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP 201
           + V+IK+     +   G  T +        +TV 
Sbjct: 460 AQVFIKLSAQLHREMAGRTTQDGVPPGSTVQTVQ 493


>gi|51512060|gb|AAU05259.1| DNA-directed DNA polymerase [Enterobacteria phage T5]
          Length = 855

 Score = 35.2 bits (80), Expect = 7.6,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 83  FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK-HPSSRNDL 141
                + +N   + HN KFD+ F    L           R+ DT+            + L
Sbjct: 205 LQKILDSENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGL 264

Query: 142 NSLCKRY 148
            SL  +Y
Sbjct: 265 KSLAMKY 271


>gi|257791192|ref|YP_003181798.1| ABC transporter, CydDC cysteine exporter (CydDC- E) family,
           permease/ATP-binding protein CydC [Eggerthella lenta DSM
           2243]
 gi|317488075|ref|ZP_07946653.1| ABC transporter [Eggerthella sp. 1_3_56FAA]
 gi|325831241|ref|ZP_08164533.1| thiol reductant ABC exporter, CydC subunit [Eggerthella sp. HGA1]
 gi|257475089|gb|ACV55409.1| ABC transporter, CydDC cysteine exporter (CydDC- E) family,
           permease/ATP-binding protein CydC [Eggerthella lenta DSM
           2243]
 gi|316912826|gb|EFV34357.1| ABC transporter [Eggerthella sp. 1_3_56FAA]
 gi|325486842|gb|EGC89289.1| thiol reductant ABC exporter, CydC subunit [Eggerthella sp. HGA1]
          Length = 596

 Score = 35.2 bits (80), Expect = 7.7,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 14/105 (13%)

Query: 70  LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL-- 127
           L   P+ + +  E   +        +     +       +  RI ++      + D L  
Sbjct: 414 LGGSPT-ADLGDEAAKWIG------VIQQRTYLFNMTLRDNLRIGREDATDDEVWDALGR 466

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172
              R       N L++L    G+  S   +H        L+ V +
Sbjct: 467 VGLRSMAERLPNGLDTLVDEAGLRFSGGERHR-----VALARVLL 506


>gi|158421558|ref|YP_001527785.1| integrase family protein [Deinococcus geothermalis DSM 11300]
 gi|158342801|gb|ABW35087.1| integrase family protein [Deinococcus geothermalis DSM 11300]
          Length = 310

 Score = 35.2 bits (80), Expect = 7.7,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 10/54 (18%)

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159
           +     R   D +   R  DTL          R  L +LC R G+    R+ HG
Sbjct: 215 LREAHVRAGGDFVLRWRDPDTL----------RGKLKALCHRAGVPYEGRAFHG 258


>gi|294628589|ref|ZP_06707149.1| ribosome-associated GTPase EngA [Streptomyces sp. e14]
 gi|292831922|gb|EFF90271.1| ribosome-associated GTPase EngA [Streptomyces sp. e14]
          Length = 494

 Score = 35.2 bits (80), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 153 SHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209
            H  +HGAL D+      Y + M   ++  F     E    +     +P ++++ R 
Sbjct: 12  EHEHEHGALGDAE-----YAEFMQLAAEEGFDVADVEGAIEEAGHGPLPVLAVVGRP 63


>gi|195168048|ref|XP_002024844.1| GL17886 [Drosophila persimilis]
 gi|198462934|ref|XP_001352623.2| GA19054 [Drosophila pseudoobscura pseudoobscura]
 gi|194108274|gb|EDW30317.1| GL17886 [Drosophila persimilis]
 gi|198151040|gb|EAL30121.2| GA19054 [Drosophila pseudoobscura pseudoobscura]
          Length = 295

 Score = 35.2 bits (80), Expect = 7.9,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 50/173 (28%), Gaps = 27/173 (15%)

Query: 25  RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT---DEFLKDKPSFSSIFS 81
           RII++G   + D  KT   +  +        S +      I    +  ++ K        
Sbjct: 84  RIIQLGLTFMDDDGKTPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGID 143

Query: 82  --EFWDFFNEQNAEWI------AHNAKFDVGFI------------NAELQRINKDPLDPS 121
             EF +         +        ++ +D G++             A+   +        
Sbjct: 144 PIEFAELLMSSGIVLVDNIKWLCFHSGYDFGYLLKLLTDQNLPCDEADFFELLHIYFPNI 203

Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
             I  L  + +        L  +  +  +      +H A  D+ L    + KM
Sbjct: 204 FDIKYLMKSCKNLKGG---LQEVADQLELRRVG-PQHQAGSDALLTGMAFFKM 252


>gi|330902548|gb|EGH33563.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 58

 Score = 35.2 bits (80), Expect = 8.2,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 205 LLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDRYISSN 244
              R      R ++ EL EH+  + T+ K      +W + + + 
Sbjct: 10  PADRKPCRIIRASESELAEHEVRMSTIAKACGAPPLWVQMLEAG 53


>gi|170717427|ref|YP_001784527.1| ribonuclease D [Haemophilus somnus 2336]
 gi|168825556|gb|ACA30927.1| ribonuclease D [Haemophilus somnus 2336]
          Length = 381

 Score = 35.2 bits (80), Expect = 8.2,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 21/126 (16%)

Query: 80  FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN 139
           FS F      Q    + H    D+       Q++      P+ ++DT  +A      +  
Sbjct: 74  FSPFIQLLANQKVTKVLHACSEDLEVFQHYFQQL------PTPMLDTQIMAAFLQHGNSI 127

Query: 140 DLNSLCKRY-------GI--------TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184
            L +L K Y       GI         +S    H A  D   L  +Y +M    +Q ++ 
Sbjct: 128 GLATLLKHYFKLEIDKGISRTNWLARPLSDVQLHYAAADVWYLLPLYQRMQQKLAQTSWQ 187

Query: 185 FKTNED 190
                D
Sbjct: 188 SAVQND 193


>gi|320158402|ref|YP_004190780.1| DNA polymerase [Vibrio vulnificus MO6-24/O]
 gi|319933714|gb|ADV88577.1| DNA polymerase [Vibrio vulnificus MO6-24/O]
          Length = 687

 Score = 35.2 bits (80), Expect = 8.3,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 42/134 (31%)

Query: 4   KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63
           K K R + FDIET GL                    T   F   +C +          + 
Sbjct: 22  KTKARILAFDIETNGL------------------LMTVSRFHTAVCEDL---------VT 54

Query: 64  GITDEFLKDKPSFS--SIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120
           G     +++        +  + ++         +AHN   +DV  +       +  P   
Sbjct: 55  G----EVREYRPHEHHELLKDLYEA-----DVLVAHNGINYDVPALKKLFPFWDIQP--- 102

Query: 121 SRIIDTLSIARRKH 134
           +++IDTL ++R   
Sbjct: 103 TKVIDTLVLSRLLF 116


>gi|313245902|emb|CBY34885.1| unnamed protein product [Oikopleura dioica]
          Length = 280

 Score = 35.2 bits (80), Expect = 8.3,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 22/111 (19%)

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119
             +HGIT   +K+K   S++  +  +    +    + H+   D G +           + 
Sbjct: 40  THIHGITPNDIKEKQGSSNLSQKVKELIKSK--IIVGHDLDHDFGVLGFR--------VP 89

Query: 120 PSRIIDTL----SIARRKHPSSRNDLNSLCK-RYGITI---SHRSKHGALL 162
            +  +DT       A +++P+    L  L +    + I   +H SK  AL 
Sbjct: 90  SNLRVDTSIRFPWTAGKQYPA----LKDLAEIELNVKIQVDTHCSKEDALA 136


>gi|320582863|gb|EFW97080.1| RNA binding protein (Arp), putative [Pichia angusta DL-1]
          Length = 598

 Score = 35.2 bits (80), Expect = 8.3,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 12/108 (11%)

Query: 9   KIVFDIETTGLDSKND----RIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63
            +V  I TTG D  +      I+EI    +  +S    +T    + P     +P      
Sbjct: 10  FVVLHITTTGDDLSSSKDSSEILEIAWSVVDSHSLAEIKTNSSLVKPLTTPVTPLCTSQT 69

Query: 64  GITDEFLKDKPSFSSIF----SEFWDFF--NEQNAEWIAHNAKFDVGF 105
            +T E +K+ PS          +        +++  ++  N  +D+  
Sbjct: 70  SLTWENVKNAPSLKDCVLLLEQDIEKHLVSAKKDFTFVVFN-SWDLRM 116


>gi|291239711|ref|XP_002739765.1| PREDICTED: CG6833-like [Saccoglossus kowalevskii]
          Length = 205

 Score = 35.2 bits (80), Expect = 8.3,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 53/167 (31%), Gaps = 16/167 (9%)

Query: 9   KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITD 67
            +  D E  G+     +   +    ++DY    +    +++ P+    +       GI  
Sbjct: 23  YVALDCEMVGVGPM-AKESALARCTVVDYH--GKCLCDLYVKPD-VPVTDYRTPWSGIRK 78

Query: 68  EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           E ++    F  + +      +      I H    D+  +        + P +        
Sbjct: 79  EHIQRGLPFFQVQNHVQQLID--GKILIGHALHNDLQAL------HLRHPFEQIADTSKC 130

Query: 128 SIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171
              RR      S+   L  L K+       + +H +L D+    D++
Sbjct: 131 VHLRRLVGMETSTPISLKRLSKQLLHRTIQQGEHCSLEDARAAMDLF 177


>gi|192359965|ref|YP_001982290.1| hypothetical protein CJA_1815 [Cellvibrio japonicus Ueda107]
 gi|190686130|gb|ACE83808.1| conserved hypothetical protein [Cellvibrio japonicus Ueda107]
          Length = 163

 Score = 35.2 bits (80), Expect = 8.3,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 56/175 (32%), Gaps = 28/175 (16%)

Query: 1   MIRKNKMRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP- 57
           MI  + ++ I  + D E + L    D    I A  +++           + P        
Sbjct: 1   MIPVDYLKHIPPILDFEASSLS---DCSYPISAGLIVNGQI----HYWLIKPKPEWIDWS 53

Query: 58  -EALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115
             +  +HG+   +L ++      ++ E        +  + + N  ++  ++   L     
Sbjct: 54  LASQAIHGMKRSYLMENGLDVQRVYEEIIQALAGFDVVY-SDNPYWESRWLTQ-LGHFGL 111

Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR--SKHGALLDSHLLS 168
           +  D  ++I              +  +S    + +         H A  D+  L+
Sbjct: 112 EVKDIQQLI------------PSHHKDSWKTIFELQFQKHLLVHHRADHDALALA 154


>gi|254281931|ref|ZP_04956899.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
 gi|219678134|gb|EED34483.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
          Length = 911

 Score = 35.2 bits (80), Expect = 8.4,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 44/139 (31%), Gaps = 27/139 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT L+    R++                F + + P      P      G      
Sbjct: 336 AFDTETTSLNYMQARLVG---------------FSMAIRPGTAAYVPL-----GHDYPGA 375

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
            D+  F  + ++        +   +  N K+D   +       N          DT+  +
Sbjct: 376 PDQLDFEQVLAKLKPILENADILKLGQNLKYDSNIL------CNHGITLRGITEDTMLES 429

Query: 131 RRKHP-SSRNDLNSLCKRY 148
                  +R+D++SL  +Y
Sbjct: 430 YVLDSVGTRHDMDSLALKY 448


>gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786]
          Length = 923

 Score = 35.2 bits (80), Expect = 8.7,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    +I+ +                  + P      P A +        L
Sbjct: 349 AFDTETTSLDPMLAQIVGL---------------SFSVEPGHAAYVPVAHR-----GPDL 388

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +     + ++   +  + + + +  + K+D   +      +N          DTL  +
Sbjct: 389 PAQLPRDEVLAKLKPWLEDASRKKLGQHLKYDAQVLVNHGIALNGIE------HDTLLES 442

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 443 YVLESHRTHDMDSLALRHLGV 463


>gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147]
          Length = 923

 Score = 35.2 bits (80), Expect = 8.7,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 27/141 (19%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
            FD ETT LD    +I+ +                  + P      P A +        L
Sbjct: 349 AFDTETTSLDPMLAQIVGL---------------SFSVEPGHAAYVPVAHR-----GPDL 388

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
             +     + ++   +  + + + +  + K+D   +      +N          DTL  +
Sbjct: 389 PAQLPRDEVLAKLKPWLEDASRKKLGQHLKYDAQVLVNHGIALNGIE------HDTLLES 442

Query: 131 RRKHPSSRNDLNSLC-KRYGI 150
                   +D++SL  +  G+
Sbjct: 443 YVLESHRTHDMDSLALRHLGV 463


>gi|331667355|ref|ZP_08368220.1| exodeoxyribonuclease VIII [Escherichia coli TA271]
 gi|331065711|gb|EGI37604.1| exodeoxyribonuclease VIII [Escherichia coli TA271]
          Length = 177

 Score = 35.2 bits (80), Expect = 8.9,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 14/112 (12%)

Query: 72  DKPSFSSIFSEFWDFFNEQNAEW----IAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
           D+        +  +F +E + E+      + A FD   +    +R       P R  +  
Sbjct: 66  DEIPLDDALLQLREFIDENSGEFFVQVWGNGANFDNTILRRSYERQGIP--CPWRYYNDR 123

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD----VYIKMM 175
            +          D ++   R  I      +H AL D+   +     ++ K++
Sbjct: 124 DVRTIVELGKAIDFDA---RMAIPFEGE-RHNALDDARYQAKYVSAIWQKLI 171


>gi|300774644|ref|ZP_07084507.1| polysaccharide biosynthesis protein [Chryseobacterium gleum ATCC
           35910]
 gi|300506459|gb|EFK37594.1| polysaccharide biosynthesis protein [Chryseobacterium gleum ATCC
           35910]
          Length = 233

 Score = 35.2 bits (80), Expect = 8.9,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 14/93 (15%)

Query: 75  SFSSIFSEFWDFFNEQ---NAEWIAHN-AKFDVGFINAELQRINKDPLDPSR-------- 122
               +  EF + FN     N    AHN  +FD  +I          P  P +        
Sbjct: 88  DEKKMLQEFGEIFNSPRLYNVILCAHNGKEFDFPWIARRYLINGMQPPAPFQMFGKKPWE 147

Query: 123 --IIDTLSIARRKHPSSRNDLNSLCKRYGITIS 153
              IDT+ + +     S   L  L   +GI   
Sbjct: 148 IPHIDTMELWKFGDYKSFVSLELLAHVFGIPTP 180


>gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3]
 gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3]
          Length = 919

 Score = 35.2 bits (80), Expect = 9.1,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 27/151 (17%)

Query: 1   MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60
           M +        FD ETT LD    +I+ I                    P      P A 
Sbjct: 335 MAKIEAAELTSFDTETTSLDPMVAQIVGISLSTE---------------PGSAAYIPVAH 379

Query: 61  KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120
           +          ++     + ++   +        +  + K+D   +       N +    
Sbjct: 380 R-----GPDAPEQLPRDEVLAKLKPWLESAERRKVGQHLKYDAQVL------ANYEIALN 428

Query: 121 SRIIDTLSIARRKHPSSRNDLNSLC-KRYGI 150
               DTL  +        +D++SL  +  G+
Sbjct: 429 GIEHDTLLESYVLESHRTHDMDSLALRHLGV 459


>gi|239932832|ref|ZP_04689785.1| amino acid adenylation domain-containing protein [Streptomyces
           ghanaensis ATCC 14672]
          Length = 1065

 Score = 35.2 bits (80), Expect = 9.1,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 44/154 (28%), Gaps = 8/154 (5%)

Query: 76  FSSIFSEFWDFFNEQNAEWI--AHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK 133
              +F    D    +    +  A     +    +A    +N   L      D+L IAR  
Sbjct: 64  LRDVFRAEQDMLAHRRVPLVRIAALRPTEPRLTDAVFNYVNFHRLSHDSWDDSLEIARTM 123

Query: 134 HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFF 193
            P   N   +    + + +     + A   +  L+DVY   +   +    G  T      
Sbjct: 124 FPLLVN---ASVNAFTLDVD--PAYVAPATAEQLADVYCAQLEAMTAAPDGRVTRPALTG 178

Query: 194 KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227
                 + + +      P    +  E +  H   
Sbjct: 179 AARATALDDWARGP-VVPSSPLLLHEHIAGHAAR 211


>gi|225568979|ref|ZP_03778004.1| hypothetical protein CLOHYLEM_05058 [Clostridium hylemonae DSM
           15053]
 gi|225162478|gb|EEG75097.1| hypothetical protein CLOHYLEM_05058 [Clostridium hylemonae DSM
           15053]
          Length = 533

 Score = 35.2 bits (80), Expect = 9.1,   Method: Composition-based stats.
 Identities = 10/88 (11%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 73  KPSFSSIFSEFWDFFNEQNAEWI--AHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130
           K   S   +   +  +E++   +  A +   +  +     +   +       +   +  A
Sbjct: 427 KEYMSEAVAYIEEHLDEEDLSIVSVASHVYLNPVYFGRAFKNTFQMTFKKYLMKCRMERA 486

Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKH 158
           +R     +  + ++C+  GI+      H
Sbjct: 487 KRLLEEGKTSIGNICETVGISNPSYFSH 514


>gi|195135051|ref|XP_002011949.1| GI14288 [Drosophila mojavensis]
 gi|193909203|gb|EDW08070.1| GI14288 [Drosophila mojavensis]
          Length = 635

 Score = 35.2 bits (80), Expect = 9.2,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 14/117 (11%)

Query: 105 FINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            IN+   + N+D     R +  L+   +K+P            +GI   H     AL  S
Sbjct: 72  CINSGKSKWNEDQAAFCRQV--LTDPEKKYPDLPYT------YFGIFDGHAGYGAALAAS 123

Query: 165 HLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221
           +   D+  +M+V  S++        D     +  T P+ +  +R      R++++EL
Sbjct: 124 YQFHDILHEMLVDCSELLLPRDEVNDNSKSHQNPTFPHPTYFQR------RVSRDEL 174


>gi|222445338|ref|ZP_03607853.1| hypothetical protein METSMIALI_00966 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434903|gb|EEE42068.1| hypothetical protein METSMIALI_00966 [Methanobrevibacter smithii
           DSM 2375]
          Length = 595

 Score = 34.8 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 22/119 (18%)

Query: 4   KNKMRKIVFDIETT---GL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59
               R + FD+E     G+ +S+ D II IG          N+          R      
Sbjct: 167 LQDFRILSFDLEVRNPHGMPNSEVDEIIMIGVASNFG---INQVISTKTNSEDR------ 217

Query: 60  LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA-EWIAHN-AKFDVGFINAELQRINKD 116
                  D+F+    S   +   F D   + N    + +N   FD+ ++    +    +
Sbjct: 218 -------DDFVNQVESEKEMIETFIDIVKKSNVDIIVGYNSDNFDLPYLKDRAKLYGLE 269


>gi|331649910|ref|ZP_08350987.1| exodeoxyribonuclease VIII [Escherichia coli M605]
 gi|331041290|gb|EGI13443.1| exodeoxyribonuclease VIII [Escherichia coli M605]
          Length = 191

 Score = 34.8 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 65/201 (32%), Gaps = 50/201 (24%)

Query: 7   MRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLC----------PNGRKN 55
           M  ++ D+ET G + K+  I+ IGAV    +     + F   +           P+G   
Sbjct: 2   MNNLMIDLETIGKN-KDAPIVSIGAVFFTPETGDIGQEFYAVVSLDSAMKQGATPDGDTI 60

Query: 56  ------SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVG 104
                 SPEA     I D       S S   SE   F N      +  +   + A FD  
Sbjct: 61  LWWLKQSPEARAAICIDDTL-----SISDALSELNHFINRHADNTKYLKVWGNGATFDNV 115

Query: 105 FINAELQRIN-KDPLDPSRIID-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158
            +    +R     P       D     TL  +    P           +  +      +H
Sbjct: 116 ILRGAYERAGQICPWAYWNDHDVRTIVTLGRSIGFDP-----------KMDMPFDGE-RH 163

Query: 159 GALLDSHLLSD----VYIKMM 175
            AL D+   +     ++ K++
Sbjct: 164 NALADARHQAKYVSAIWQKLI 184


>gi|301121881|ref|XP_002908667.1| exonuclease, putative [Phytophthora infestans T30-4]
 gi|262099429|gb|EEY57481.1| exonuclease, putative [Phytophthora infestans T30-4]
          Length = 516

 Score = 34.8 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 68/219 (31%), Gaps = 33/219 (15%)

Query: 2   IRKNKMRKIVFDIE---TTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58
            R  +   +  D E   TT    K   +  +  V+  +    +     ++ P        
Sbjct: 198 TRSAEQLLLALDCEMCRTT----KGVELTRLTLVDASEKVLLDE----YVRPKN-PIVDY 248

Query: 59  ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117
             +  GIT E         + I  +F      + A  + H+ + D+  +    +R+    
Sbjct: 249 CTRYSGITCEIMEATTMRLADIQDKFLALVPAE-AILVGHSIENDLQALRVLHRRV---- 303

Query: 118 LDPSRIIDT-LSIARRKHPSSRNDLNSLCKRY--GITISHRSKHGALLDSHLLSDVYIKM 174
                 IDT       K P  R  L  L  +Y      +    H ++ D+     +    
Sbjct: 304 ------IDTVCLYPHPKGPPFRTALRFLASQYLNRAIQTGTDGHCSVEDAIATLQL---- 353

Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213
                +I  G          ++KK V  ++  K+   + 
Sbjct: 354 --AQLKIKHGPTFPSIEHEYKQKKVVNEMARAKKSVLIV 390


>gi|221133715|ref|ZP_03560020.1| oligoribonuclease [Glaciecola sp. HTCC2999]
          Length = 191

 Score = 34.8 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 29/174 (16%)

Query: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNG--RKNS 56
           ++   I  D+E TGLD +   ++EI  +        L        +Q    P+      +
Sbjct: 14  HEQNLIWIDMEMTGLDPEECVVLEIATIVTDAQLNILAEGPVIAIYQ----PDDVLANMN 69

Query: 57  PEALKLH---GITDEFLKDKPSFSSIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAE 109
              ++ H   G+T    + K S     +E   F      E+ +    +    D  F+   
Sbjct: 70  EWCIETHGKTGLTQRCRESKYSVEEAQAETIAFLQAYVPERTSPLCGNTIGQDRRFMVKY 129

Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163
           +  +  +     R ID  +I           L    K+ G+       H AL D
Sbjct: 130 MPEL--EAYCHYRSIDVSTIKELAVRWKPQVLKGFRKK-GV-------HLALDD 173


>gi|88812004|ref|ZP_01127257.1| chromosome segregation protein [Nitrococcus mobilis Nb-231]
 gi|88790888|gb|EAR22002.1| chromosome segregation protein [Nitrococcus mobilis Nb-231]
          Length = 505

 Score = 34.8 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 149 GITISHRSKHGAL--LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206
           GI  + R+   AL   D   L++   K+++G           E R  + ++      + L
Sbjct: 56  GIAENRRAMAQALMPSDVEALAEQLRKLIIGHRNKQRALLDAEQRVDEAQRAQSRAAAEL 115

Query: 207 KRDKPLFTRITKEELDEHDKTIQTLG--KNAI 236
            R     ++  + EL E  + ++     KNA+
Sbjct: 116 SRTTSRLSQA-ETELAEAGRRLERFENWKNAL 146


>gi|66391472|ref|YP_238997.1| DexA exonuclease A [Enterobacteria phage RB43]
 gi|62288560|gb|AAX78543.1| DexA exonuclease A [Enterobacteria phage RB43]
          Length = 224

 Score = 34.8 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 35/190 (18%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN------SPEALKLHG 64
           V+D ET G    N +I+E+  V  +D      TF+  + P  +        +  AL+ + 
Sbjct: 9   VWDYETVGPSP-NGKIVELSYVPFIDDPHNPPTFEELVSPPVKSINLICVSNQIALQTNQ 67

Query: 65  ITD--------EFLKDKPSFSSI-----FSEFWDFFNEQNA------EWIAHNAKFDVGF 105
            +D          +  KPS   I       +F++             +++    +FD G 
Sbjct: 68  RSDWWKQQSEEARVILKPSPDDIDLYEGHKQFFEDLKADGVSRWQSLDYVR-GPEFDRGI 126

Query: 106 INAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDL-----NSLCKRYGITIS---HRSK 157
           +   ++++         +      +R    +  N L     ++   R GI      H S 
Sbjct: 127 LVDVVRKMTGKVDIFDDMPTVFWNSRDVRTAIENRLLTRGASTCPLRKGILNGFVMHNSI 186

Query: 158 HGALLDSHLL 167
           H    D+ +L
Sbjct: 187 HDCAKDALML 196


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.157    0.476 

Lambda     K      H
   0.267   0.0482    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,001,233,613
Number of Sequences: 14124377
Number of extensions: 215942673
Number of successful extensions: 677441
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 7834
Number of HSP's successfully gapped in prelim test: 7294
Number of HSP's that attempted gapping in prelim test: 637662
Number of HSP's gapped (non-prelim): 16373
length of query: 245
length of database: 4,842,793,630
effective HSP length: 135
effective length of query: 110
effective length of database: 2,936,002,735
effective search space: 322960300850
effective search space used: 322960300850
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 80 (35.2 bits)